Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold378
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 305097
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
File 2 of 3
Found at i:110352 original size:26 final size:25
Alignment explanation
Indices: 110300--110362 Score: 83
Period size: 27 Copynumber: 2.4 Consensus size: 25
110290 AATTTTAATT
110300 TTATTCTTTTTTATTTTTTTATCTTTA
1 TTATT-TTTTTTATTTTTTTA-CTTTA
110327 TTATATTTTTTTATTATTTTTA-TTTA
1 TTAT-TTTTTTTATT-TTTTTACTTTA
110353 TTATTTTTTT
1 TTATTTTTTT
110363 AATGTCAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
25 6 0.18
26 8 0.24
27 13 0.38
28 7 0.21
ACGTcount: A:0.17, C:0.03, G:0.00, T:0.79
Consensus pattern (25 bp):
TTATTTTTTTTATTTTTTTACTTTA
Found at i:110354 original size:10 final size:9
Alignment explanation
Indices: 110298--110351 Score: 56
Period size: 9 Copynumber: 5.9 Consensus size: 9
110288 TAAATTTTAA
110298 TTTTATTCTT
1 TTTTATT-TT
110308 TTTTA-TTT
1 TTTTATTTT
*
110316 TTTTATCTT
1 TTTTATTTT
*
110325 TATTATATTT
1 TTTTAT-TTT
*
110335 TTTTATTAT
1 TTTTATTTT
110344 TTTTATTT
1 TTTTATTT
110352 ATTATTTTTT
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
8 7 0.19
9 17 0.47
10 12 0.33
ACGTcount: A:0.17, C:0.04, G:0.00, T:0.80
Consensus pattern (9 bp):
TTTTATTTT
Found at i:110869 original size:15 final size:15
Alignment explanation
Indices: 110834--110887 Score: 53
Period size: 15 Copynumber: 3.8 Consensus size: 15
110824 TTTGCTTAGA
*
110834 TTTTTCTTTTTTCTCT
1 TTTTTC-TTTCTCTCT
*
110850 ATTTTCTTTCTCTCT
1 TTTTTCTTTCTCTCT
110865 TTTTTC-TTCT-T-T
1 TTTTTCTTTCTCTCT
110877 TTTTT-TTTCTC
1 TTTTTCTTTCTC
110888 ACTTGCTGCC
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
12 10 0.30
13 1 0.03
14 4 0.12
15 13 0.39
16 5 0.15
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.78
Consensus pattern (15 bp):
TTTTTCTTTCTCTCT
Found at i:110870 original size:11 final size:11
Alignment explanation
Indices: 110838--110879 Score: 50
Period size: 10 Copynumber: 3.7 Consensus size: 11
110828 CTTAGATTTT
110838 TCTTTTTTCTC
1 TCTTTTTTCTC
*
110849 TATTTTCTTTCTC
1 T-CTTT-TTTCTC
110862 TCTTTTTTCT-
1 TCTTTTTTCTC
110872 TCTTTTTT
1 TCTTTTTT
110880 TTTTTCTCAC
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
10 8 0.30
11 6 0.22
12 6 0.22
13 7 0.26
ACGTcount: A:0.02, C:0.21, G:0.00, T:0.76
Consensus pattern (11 bp):
TCTTTTTTCTC
Found at i:110887 original size:24 final size:24
Alignment explanation
Indices: 110834--110887 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
110824 TTTGCTTAGA
110834 TTTT-TCTTTTTTCTCTATTTTCT
1 TTTTCTCTTTTTTCTCTATTTTCT
* *
110857 TTCTCTCTTTTTTCTTCT-TTTTTT
1 TTTTCTCTTTTTTC-TCTATTTTCT
110881 TTTTCTC
1 TTTTCTC
110888 ACTTGCTGCC
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
23 3 0.12
24 20 0.77
25 3 0.12
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.78
Consensus pattern (24 bp):
TTTTCTCTTTTTTCTCTATTTTCT
Found at i:111854 original size:122 final size:120
Alignment explanation
Indices: 111628--111874 Score: 294
Period size: 122 Copynumber: 2.1 Consensus size: 120
111618 ATGAATTCTA
*
111628 AAAATTGAAAACCAAGAAGAATCCCCTCGAAAAAATTTACGGAGTAAAAAATACTATATTTCAGA
1 AAAATTGAAAACCAAGAAAAATCCCCTCGAAAAAATTTACGGAGTAAAAAATACTATATTTCAGA
* *
111693 AAAAAAGGAAGTTTGAAGGAAAAAAATCAAAAATGAATGAAAATGAATGAATTTTTG
66 AAAAAA-GAAG-TTCAAGAAAAAAAATCAAAAATGAATGAAAATGAATGAATTTTTG
*
111750 AAAATTGAAAACCAAGAAAAATCCCTTC-AAAAAATTTTACGGAGTAGAAAAA-ATCT-TATTTC
1 AAAATTGAAAACCAAGAAAAATCCCCTCGAAAAAA-TTTACGGAGTA-AAAAATA-CTATATTTC
** * * *
111812 -G-AAAAAA-AA-TTCAAGAAAAAAAATCGAAAGCT-CATGAAAATGAATGAACTTTTA
63 AGAAAAAAAGAAGTTCAAGAAAAAAAATC-AAAAATGAATGAAAATGAATGAATTTTTG
*
111866 AAAACTGAA
1 AAAATTGAA
111875 TTAATAGGAA
Statistics
Matches: 111, Mismatches: 10, Indels: 14
0.82 0.07 0.10
Matches are distributed among these distances:
116 41 0.37
117 4 0.04
118 2 0.02
120 6 0.05
121 7 0.06
122 44 0.40
123 7 0.06
ACGTcount: A:0.54, C:0.11, G:0.13, T:0.22
Consensus pattern (120 bp):
AAAATTGAAAACCAAGAAAAATCCCCTCGAAAAAATTTACGGAGTAAAAAATACTATATTTCAGA
AAAAAAGAAGTTCAAGAAAAAAAATCAAAAATGAATGAAAATGAATGAATTTTTG
Found at i:113564 original size:84 final size:84
Alignment explanation
Indices: 113223--114020 Score: 772
Period size: 84 Copynumber: 9.5 Consensus size: 84
113213 AGATGAGGGA
* * ** * * *
113223 TTTACCAAGGACTAGGTTGACAGGTGAATAATAGATGAAGGTTGA-TCGGAGACTGAGCTGA-AG
1 TTTACCAGGGACTAAGCCGACAGGTAAATAATGGATGAAGGTTGACT-AGAGACTGAGCTGACAG
*
113286 GTCACCATAAGGGTAATGGG
65 GTCACCATAAAGGTAATGGG
* * * **
113306 TTTACCAAGGACTGAGCCGACAGGTAAATAATGGATGAAGGTTAACCGGAGACTGAGCTGACAGG
1 TTTACCAGGGACTAAGCCGACAGGTAAATAATGGATGAAGGTTGACTAGAGACTGAGCTGACAGG
*
113371 TCACTATAAAGGTAATGGG
66 TCACCATAAAGGTAATGGG
* ** * *
113390 TTTTACC-GAGGACTAAGCCGATAGGTAAATAATGAGATGAAGTTTGTTTCCT-GAGATTGAGCA
1 -TTTACCAG-GGACTAAGCCGACAGGTAAATAATG-GATGAAG---GTTGACTAGAGACTGAGCT
* *
113453 GACAGGTCACCATAATGGTAACGGG
60 GACAGGTCACCATAAAGGTAATGGG
* * *
113478 TTTACCAGGGACTAAGCCGACAGGTAAACAATAGATGAAGGTTGACTAGAGACTGAGCTAACAGG
1 TTTACCAGGGACTAAGCCGACAGGTAAATAATGGATGAAGGTTGACTAGAGACTGAGCTGACAGG
*
113543 TCACCATAAAAGTAATGGG
66 TCACCATAAAGGTAATGGG
* * * * *
113562 TTTATCGGGGACTAAACCGACAGATAAATAATGGATGAAGGTTGACTAGAGACTGAGCTGACAAG
1 TTTACCAGGGACTAAGCCGACAGGTAAATAATGGATGAAGGTTGACTAGAGACTGAGCTGACAGG
*
113627 TCACCATAAAGGAAATGGG
66 TCACCATAAAGGTAATGGG
* * * * * *
113646 TTTACCGGGGACTAAGTCGACAGGTAAACAATGGATGAAGGTTAACTAGAGACTGAGCTAACACG
1 TTTACCAGGGACTAAGCCGACAGGTAAATAATGGATGAAGGTTGACTAGAGACTGAGCTGACAGG
* *
113711 TCACCATAAAGGAAATAGG
66 TCACCATAAAGGTAATGGG
* * * * * *
113730 TTTACCGGGGACTAAGCTGACAAGTAAACAATGGATGAAGGTTGAC-CGAAGACTGAGTTGACAG
1 TTTACCAGGGACTAAGCCGACAGGTAAATAATGGATGAAGGTTGACTAG-AGACTGAGCTGACAG
* *
113794 GTCACCAT-AGGGAAAATGGG
65 GTCACCATAAAGG-TAATGGG
* * * * * * * *
113814 TTTATCGGGGACTAAACCGAC-GAGTAAACAATGAATGAAGGTTGA-TCAAAAACTGAGCTAACA
1 TTTACCAGGGACTAAGCCGACAG-GTAAATAATGGATGAAGGTTGACT-AGAGACTGAGCTGACA
* *
113877 GGTCACCATAAGGGAAATGGG
64 GGTCACCATAAAGGTAATGGG
* * * * ** * *
113898 TTTACCAGGGACTAAGCCGA-TGACTAAATAATGGATAAAGTTTGACCGGAGACTAAGCTGACAA
1 TTTACCAGGGACTAAGCCGACAG-GTAAATAATGGATGAAGGTTGACTAGAGACTGAGCTGACAG
*
113962 GTCACCAT-AAGGAAAATGGG
65 GTCACCATAAAGG-TAATGGG
* * *
113982 TTTACCAAGGACTAAGCCAAC-GACTAAATAATGGATGAA
1 TTTACCAGGGACTAAGCCGACAG-GTAAATAATGGATGAA
114021 AGTTATTTCC
Statistics
Matches: 605, Mismatches: 90, Indels: 39
0.82 0.12 0.05
Matches are distributed among these distances:
83 64 0.11
84 430 0.71
85 33 0.05
86 14 0.02
87 28 0.05
88 32 0.05
89 4 0.01
ACGTcount: A:0.36, C:0.15, G:0.27, T:0.21
Consensus pattern (84 bp):
TTTACCAGGGACTAAGCCGACAGGTAAATAATGGATGAAGGTTGACTAGAGACTGAGCTGACAGG
TCACCATAAAGGTAATGGG
Found at i:114122 original size:42 final size:42
Alignment explanation
Indices: 114063--114182 Score: 138
Period size: 42 Copynumber: 2.9 Consensus size: 42
114053 TAAAGCGATA
* * *
114063 AAGAATTCTCTCGGGTCTAAGCCGACAGAGAGACGATGGATG
1 AAGAAGTCTCTCAGGTCTAAGCCGACAGAGAGACGATAGATG
* * *
114105 AAGAAGTCTCTCAGGTCTAAGCTGACAG-GAGGATGAAAGATG
1 AAGAAGTCTCTCAGGTCTAAGCCGACAGAGA-GACGATAGATG
*
114147 AAAAAGTCTC-CAGGTCTAAGCCGACA-AGCAGACGAT
1 AAGAAGTCTCTCAGGTCTAAGCCGACAGAG-AGACGAT
114183 TGAAAAATGA
Statistics
Matches: 65, Mismatches: 10, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
41 22 0.34
42 43 0.66
ACGTcount: A:0.35, C:0.19, G:0.28, T:0.17
Consensus pattern (42 bp):
AAGAAGTCTCTCAGGTCTAAGCCGACAGAGAGACGATAGATG
Found at i:114234 original size:42 final size:42
Alignment explanation
Indices: 114183--114268 Score: 127
Period size: 42 Copynumber: 2.0 Consensus size: 42
114173 AGCAGACGAT
114183 TGAAAAATGAAGAAATCTCCCGGGACTAAGCCAACGGACAGA
1 TGAAAAATGAAGAAATCTCCCGGGACTAAGCCAACGGACAGA
* * * * *
114225 TGAAAAATGAAGAAATCTCTCGGGTCTAAGTCGACGGGCAGA
1 TGAAAAATGAAGAAATCTCCCGGGACTAAGCCAACGGACAGA
114267 TG
1 TG
114269 GTTGATAAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.38, C:0.19, G:0.27, T:0.16
Consensus pattern (42 bp):
TGAAAAATGAAGAAATCTCCCGGGACTAAGCCAACGGACAGA
Found at i:114455 original size:42 final size:41
Alignment explanation
Indices: 114401--114539 Score: 152
Period size: 42 Copynumber: 3.3 Consensus size: 41
114391 GTAAAGAATA
**
114401 ATAAAGAAGTCTCCCGGGTCTGAGCTGATGGGCAGACAAAAG
1 ATAAA-AAGTCTCCCGGGTCAAAGCTGATGGGCAGACAAAAG
* * ** *
114443 ATGAAAAAGTCTCTCGGGTCAAAGTTGACAGACAGACAAAAG
1 AT-AAAAAGTCTCCCGGGTCAAAGCTGATGGGCAGACAAAAG
* *
114485 ATAAAGAAGTCTCCTGGGTCAAAGCCGATGGGCAGACAAAAG
1 ATAAA-AAGTCTCCCGGGTCAAAGCTGATGGGCAGACAAAAG
*
114527 GTAAAAAAGTCTC
1 AT-AAAAAGTCTC
114540 TCGAGTTTGA
Statistics
Matches: 79, Mismatches: 15, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
41 3 0.04
42 70 0.89
43 6 0.08
ACGTcount: A:0.39, C:0.18, G:0.27, T:0.17
Consensus pattern (41 bp):
ATAAAAAGTCTCCCGGGTCAAAGCTGATGGGCAGACAAAAG
Found at i:114563 original size:84 final size:85
Alignment explanation
Indices: 114401--114593 Score: 217
Period size: 84 Copynumber: 2.3 Consensus size: 85
114391 GTAAAGAATA
* ** * * *
114401 ATAAAGAAGTCTCCCGGGTCTGAGCTGATGGGCAGACAAAAGATGAAAAAGTCTCTCGGGTCAAA
1 ATAAAGAAGTCTCCTGGGTCAAAGCCGATGGGCAGACAAAAGATAAAAAAGTCTCTCGAGTCAAA
***
114466 GTTGACAGACAGACA-AAAG
66 GCCAACAGACAGACATAAAG
* ***
114485 ATAAAGAAGTCTCCTGGGTCAAAGCCGATGGGCAGACAAAAGGTAAAAAAGTCTCTCGAGTTTGA
1 ATAAAGAAGTCTCCTGGGTCAAAGCCGATGGGCAGACAAAAGATAAAAAAGTCTCTCGAGTCAAA
* *
114550 GCCAACAGGCAGACATAAGG
66 GCCAACAGACAGACATAAAG
* * *
114570 GTAAGGAAGTTTCCTGGGTCAAAG
1 ATAAAGAAGTCTCCTGGGTCAAAG
114594 TCGACATGCA
Statistics
Matches: 90, Mismatches: 18, Indels: 1
0.83 0.17 0.01
Matches are distributed among these distances:
84 66 0.73
85 24 0.27
ACGTcount: A:0.37, C:0.18, G:0.28, T:0.18
Consensus pattern (85 bp):
ATAAAGAAGTCTCCTGGGTCAAAGCCGATGGGCAGACAAAAGATAAAAAAGTCTCTCGAGTCAAA
GCCAACAGACAGACATAAAG
Found at i:114673 original size:43 final size:43
Alignment explanation
Indices: 114552--114678 Score: 121
Period size: 43 Copynumber: 3.0 Consensus size: 43
114542 GAGTTTGAGC
* * * * **
114552 CAACAGGCAGACATAAGGGTAAGGAAGTTTCCTGGGTCAAAGT
1 CAACAGGCAGACTTAAAGGTAAGAAAGTCTCCAAGGTCAAAGT
* * **
114595 CGACATGCAGACTTAAAGGTGTGAAAGTCTCCAAGGTCAAAGT
1 CAACAGGCAGACTTAAAGGTAAGAAAGTCTCCAAGGTCAAAGT
* * *
114638 CAATAGGCAGACTTAAGGGTAAAGAAA-TCTTCAAGGTCAAA
1 CAACAGGCAGACTTAAAGGT-AAGAAAGTCTCCAAGGTCAAA
114679 ACCGACAGGT
Statistics
Matches: 66, Mismatches: 17, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
43 62 0.94
44 4 0.06
ACGTcount: A:0.38, C:0.17, G:0.26, T:0.20
Consensus pattern (43 bp):
CAACAGGCAGACTTAAAGGTAAGAAAGTCTCCAAGGTCAAAGT
Found at i:114968 original size:48 final size:48
Alignment explanation
Indices: 114905--115204 Score: 284
Period size: 48 Copynumber: 6.2 Consensus size: 48
114895 GAGAAAGACC
* * *
114905 AGTTTAACCAAGCCCTAACACCAATACAGTCAAATGAGGGAT-AAACAA
1 AGTTTGACCAGGCCCTAACACCAATACAGTCAAACGAGGGATGAAA-AA
* * * * *
114953 AGTTTGACCAGGCCCTAACACCAATGCAATCAAATGAGAGATGAAAAG
1 AGTTTGACCAGGCCCTAACACCAATACAGTCAAACGAGGGATGAAAAA
* * * * * * *
115001 AGTTTGACCAAGTCTTAA-AGCCAATACAATCAAACG-GGGGTGGAAAG
1 AGTTTGACCAGGCCCTAACA-CCAATACAGTCAAACGAGGGATGAAAAA
* * *
115048 AGTTTGACAAGGCTCTAACACCAATACATAGTCAAACAAGGGATGAAAAA
1 AGTTTGACCAGGCCCTAACACCAATAC--AGTCAAACGAGGGATGAAAAA
* * ***
115098 AGTTTGACCAGGCCCTAACACTAATACAGTCAAACGAGGGAAGATTTGA
1 AGTTTGACCAGGCCCTAACACCAATACAGTCAAACGAGGGATGA-AAAA
* * *
115147 A-TTTGACCAGGCCCTAACACTAATACAGCCAAACGAGGGATGAAAAGG
1 AGTTTGACCAGGCCCTAACACCAATACAGTCAAACGAGGGATGAAAA-A
115195 AGTTTGACCA
1 AGTTTGACCA
115205 TATACAATAA
Statistics
Matches: 205, Mismatches: 38, Indels: 17
0.79 0.15 0.07
Matches are distributed among these distances:
47 29 0.14
48 124 0.60
49 20 0.10
50 32 0.16
ACGTcount: A:0.41, C:0.20, G:0.21, T:0.18
Consensus pattern (48 bp):
AGTTTGACCAGGCCCTAACACCAATACAGTCAAACGAGGGATGAAAAA
Found at i:115124 original size:97 final size:97
Alignment explanation
Indices: 114905--115204 Score: 288
Period size: 97 Copynumber: 3.1 Consensus size: 97
114895 GAGAAAGACC
* * * * *
114905 AGTTTAACCAAGCCCTAACA-CCAATACAGTCAAATGAGGGATAAACAA-AGTTTGACCAGGCCC
1 AGTTTGACCAAGCCCTAA-AGCCAATACAATCAAACGAGGGA-AGATAAGAGTTTGACCAGGCCC
* * *
114968 TAACACCAATGCAA-TCAAATGAGAGATGAAAAG
64 TAACACCAATACAAGTCAAACGAGGGATGAAAAG
* * * ** * *
115001 AGTTTGACCAAGTCTTAAAGCCAATACAATCAAACGGGGGTGGA-AAGAGTTTGACAAGGCTCTA
1 AGTTTGACCAAGCCCTAAAGCCAATACAATCAAACGAGGGAAGATAAGAGTTTGACCAGGCCCTA
* *
115065 ACACCAATACATAGTCAAACAAGGGATGAAAAA
66 ACACCAATACA-AGTCAAACGAGGGATGAAAAG
* * * ** *
115098 AGTTTGACCAGGCCCTAACA-CTAATACAGTCAAACGAGGGAAGATTTGAATTTGACCAGGCCCT
1 AGTTTGACCAAGCCCTAA-AGCCAATACAATCAAACGAGGGAAGATAAGAGTTTGACCAGGCCCT
* *
115162 AACACTAATAC-AGCCAAACGAGGGATGAAAAGG
65 AACACCAATACAAGTCAAACGAGGGATGAAAA-G
115195 AGTTTGACCA
1 AGTTTGACCA
115205 TATACAATAA
Statistics
Matches: 164, Mismatches: 33, Indels: 13
0.78 0.16 0.06
Matches are distributed among these distances:
94 2 0.01
95 27 0.16
96 51 0.31
97 59 0.36
98 25 0.15
ACGTcount: A:0.41, C:0.20, G:0.21, T:0.18
Consensus pattern (97 bp):
AGTTTGACCAAGCCCTAAAGCCAATACAATCAAACGAGGGAAGATAAGAGTTTGACCAGGCCCTA
ACACCAATACAAGTCAAACGAGGGATGAAAAG
Found at i:115172 original size:145 final size:145
Alignment explanation
Indices: 114919--115202 Score: 324
Period size: 145 Copynumber: 2.0 Consensus size: 145
114909 TAACCAAGCC
** *
114919 CTAACACCAATACAGTCAAATGAGGGATAAACAAAGTTTGACCAGGCCCTAACACCAATGCAATC
1 CTAACACCAATACAGTCAAACAAGGGATAAACAAAGTTTGACCAGGCCCTAACACCAATACAATC
* * * * * * * *
114984 AAATGAGAGATGAAAAGAGTTTGACCAAGTCTTAAAGCCAATACAATCAAACG-GGGGTGGAAA-
66 AAACGAGAGAAGAAAAGAATTTGACCAAGCCCTAAAGCCAATACAACCAAACGAGGGATGAAAAG
115047 GAGTTTGACAAGGCT
131 GAGTTTGACAAGGCT
*
115062 CTAACACCAATACATAGTCAAACAAGGGATGAAA-AAAGTTTGACCAGGCCCTAACACTAATACA
1 CTAACACCAATAC--AGTCAAACAAGGGAT-AAACAAAGTTTGACCAGGCCCTAACACCAATACA
* * *** * * *
115126 GTCAAACGAGGGAAGATTTGAATTTGACCAGGCCCTAACA-CTAATACAGCCAAACGAGGGATGA
63 ATCAAACGAGAGAAGAAAAGAATTTGACCAAGCCCTAA-AGCCAATACAACCAAACGAGGGATGA
115190 AAAGGAGTTTGAC
127 AAAGGAGTTTGAC
115203 CATATACAAT
Statistics
Matches: 115, Mismatches: 20, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
143 13 0.11
145 81 0.70
146 12 0.10
147 9 0.08
ACGTcount: A:0.41, C:0.20, G:0.21, T:0.18
Consensus pattern (145 bp):
CTAACACCAATACAGTCAAACAAGGGATAAACAAAGTTTGACCAGGCCCTAACACCAATACAATC
AAACGAGAGAAGAAAAGAATTTGACCAAGCCCTAAAGCCAATACAACCAAACGAGGGATGAAAAG
GAGTTTGACAAGGCT
Found at i:115292 original size:21 final size:21
Alignment explanation
Indices: 115266--115305 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
115256 GGAAAGAGTT
*
115266 TGGCTAGATATAGCCAAACAG
1 TGGCTAGATACAGCCAAACAG
*
115287 TGGCTAGATACAGTCAAAC
1 TGGCTAGATACAGCCAAAC
115306 GATGAAAGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.38, C:0.20, G:0.23, T:0.20
Consensus pattern (21 bp):
TGGCTAGATACAGCCAAACAG
Found at i:115372 original size:35 final size:35
Alignment explanation
Indices: 115287--115387 Score: 95
Period size: 35 Copynumber: 3.0 Consensus size: 35
115277 AGCCAAACAG
115287 TGGCTAGATACAGTCAAACGA---T-GAAAGAAGTT
1 TGGCTAGATACAGTCAAACGATGGTGGAAAG-AGTT
* * * *
115319 TGACCAAATGCAGTCAAACGATGGTGGAAAGAGTT
1 TGGCTAGATACAGTCAAACGATGGTGGAAAGAGTT
* *
115354 TGGCTAGATACAGCCAAACGGTGGTGCG-AAGAGT
1 TGGCTAGATACAGTCAAACGATGGTG-GAAAGAGT
115388 AAAACGATAA
Statistics
Matches: 54, Mismatches: 10, Indels: 7
0.76 0.14 0.10
Matches are distributed among these distances:
32 17 0.31
35 31 0.57
36 6 0.11
ACGTcount: A:0.36, C:0.15, G:0.30, T:0.20
Consensus pattern (35 bp):
TGGCTAGATACAGTCAAACGATGGTGGAAAGAGTT
Found at i:123548 original size:166 final size:161
Alignment explanation
Indices: 123392--123981 Score: 653
Period size: 166 Copynumber: 3.6 Consensus size: 161
123382 AAAATAAAGA
*
123392 TTTCAAAGAAAAAATTCAAAAAAGAATGAAAATGAATGAATTTTTAAAAACTGAATTAATATG-A
1 TTTCAAGGAAAAAA-T-AAAAAAGAATGAAAATGAATGAATTTTT-AAAACTGAATTAATATGAA
* * * *
123456 ATCAAATGATGATGTTTGATGAATTCTAAAAACTGAAAACCAAGAAAAATCCACTCGCAAAAATT
63 AT-AAATGATAATGTTTGATGAATTTTAAAAATTGAAAACCAAGAAAAATCCACTC-AAAAAATT
* *
123521 TACGGAGTAGAAAATATAGTATTTAGGAAAAAAAGAAG
126 TACGGAGTAGAAAACAT-GTATTT-CGAAAAAAAGAAG
* *
123559 TTTCAAGGAAAAAATCAAAAATGAATGAAAATGAATGAATTTTTGAAAACTGAATTAACATGAAA
1 TTTCAAGGAAAAAAT-AAAAAAGAATGAAAATGAATGAATTTTT-AAAACTGAATTAATATGAAA
* * * *
123624 TAAATAATAATGTTTGATGAATTTTAAAAATTAAAAACCAAGAAAAATTCTCTCAAAAAATTTTA
64 TAAATGATAATGTTTGATGAATTTTAAAAATTGAAAACCAAGAAAAATCCACTCAAAAAA-TTTA
* *
123689 CAGAGTAGAAAACACCGTATTTCGAAAAAAAAGGGAAG
128 CGGAGTAGAAAACA-TGTATTTCG-AAAAAAA--GAAG
* *
123727 TTTCAAGGAAAAAA-ATAAAA-AATG--AATGAAT---TTTTTAAAACTCAATTAATATGAAATA
1 TTTCAAGGAAAAAATAAAAAAGAATGAAAATGAATGAATTTTTAAAACTGAATTAATATGAAATA
* *
123785 AATGATAATGTTTGATGAATTTTAAAAATTGAAAACCAAGAAAAATCCCCTCAAAAAAATTTATG
66 AATGATAATGTTTGATGAATTTTAAAAATTGAAAACCAAGAAAAATCCACTC-AAAAAATTTACG
*
123850 AAGTAGAAAACACTGTATTTCGAAAAAAA-AA-
130 GAGTAGAAAACA-TGTATTTCGAAAAAAAGAAG
* ** * * *
123881 ATTCAAGGAAAAAAT-TGAAAGCTCATGAAAATAAATAAATTTTTAAAACTGAATTAATATGAAA
1 TTTCAAGGAAAAAATAAAAAAG--AATGAAAATGAATGAATTTTTAAAACTGAATTAATATGAAA
* * * * * *
123945 TAAATAAAAATATTTGATAAATTTTAAAGATTAAAAA
64 TAAATGATAATGTTTGATGAATTTTAAAAATTGAAAA
123982 TTAAAAAAAT
Statistics
Matches: 368, Mismatches: 39, Indels: 37
0.83 0.09 0.08
Matches are distributed among these distances:
154 17 0.05
155 2 0.01
157 3 0.01
158 7 0.02
159 98 0.27
160 11 0.03
162 55 0.15
163 7 0.02
165 10 0.03
166 124 0.34
167 16 0.04
168 18 0.05
ACGTcount: A:0.53, C:0.08, G:0.12, T:0.27
Consensus pattern (161 bp):
TTTCAAGGAAAAAATAAAAAAGAATGAAAATGAATGAATTTTTAAAACTGAATTAATATGAAATA
AATGATAATGTTTGATGAATTTTAAAAATTGAAAACCAAGAAAAATCCACTCAAAAAATTTACGG
AGTAGAAAACATGTATTTCGAAAAAAAGAAG
Found at i:123779 original size:325 final size:320
Alignment explanation
Indices: 123420--124021 Score: 841
Period size: 325 Copynumber: 1.9 Consensus size: 320
123410 AAAAAGAATG
* *
123420 AAAATGAATGAATTTTTAAAAACTGAATTAATATG-AATCAAATGATGATGTTTGATGAATTCTA
1 AAAATGAATGAATTTTTAAAAACTCAATTAATATGAAAT-AAATGATAATGTTTGATGAATTCTA
** * * *
123484 AAAACTGAAAACCAAGAAAAATCCACTCGCAAAAATTTACGGAGTAGAAAATA-TAGTATTTAGG
65 AAAACTGAAAACCAAGAAAAATCCACTCAAAAAAATTTACGAAGTAGAAAACACT-GTATTT-CG
* * *
123548 AAAAAAAGAAGTTTCAAGGAAAAAA-TCAAAAATGAATGAAAATGAATGAATTTTTGAAAACTGA
128 AAAAAAA-AA-ATTCAAGGAAAAAATTCAAAAAT-AATGAAAATAAATAAATTTTT-AAAACTGA
* * *
123612 ATTAACATGAAATAAATAATAATGTTTGATGAATTTTAAAAATTAAAAACCAAGAAAAATTCTCT
189 ATTAACATGAAATAAATAAAAATATTTGATAAATTTTAAAAATTAAAAACCAA-AAAAATTCTCT
* * *
123677 CAAAAAATTTTACAGAGTAGAAAACACCGTATTTCGAAAAAAAAGGGAAGTTTCAAGGAAAAAAA
253 CAAAAAAATCTACAGAGAAGAAAACACCGTATTTCGAAAAAAAAGGGAAGTTTCAAGGAAAAAAA
123742 TAA
318 TAA
* *
123745 AAAATGAATGAATTTTTTAAAACTCAATTAATATGAAATAAATGATAATGTTTGATGAATTTTAA
1 AAAATGAATGAATTTTTAAAAACTCAATTAATATGAAATAAATGATAATGTTTGATGAATTCTAA
* * *
123810 AAATTGAAAACCAAGAAAAATCCCCTCAAAAAAATTTATGAAGTAGAAAACACTGTATTTCGAAA
66 AAACTGAAAACCAAGAAAAATCCACTCAAAAAAATTTACGAAGTAGAAAACACTGTATTTCGAAA
* ** * *
123875 AAAAAAATTCAAGGAAAAAATTGAAAGCTCATGAAAATAAATAAATTTTTAAAACTGAATTAATA
131 AAAAAAATTCAAGGAAAAAATTCAAAAATAATGAAAATAAATAAATTTTTAAAACTGAATTAACA
* ** *
123940 TGAAATAAATAAAAATATTTGATAAATTTTAAAGATTAAAAATTAAAAAAATTCTCTTAAAAAAA
196 TGAAATAAATAAAAATATTTGATAAATTTTAAAAATTAAAAACCAAAAAAATTCTCTCAAAAAAA
124005 TCTACAGAGAAGAAAAC
261 TCTACAGAGAAGAAAAC
124022 CCTGTAATTT
Statistics
Matches: 244, Mismatches: 30, Indels: 11
0.86 0.11 0.04
Matches are distributed among these distances:
320 32 0.13
321 54 0.22
322 31 0.13
323 7 0.03
324 8 0.03
325 108 0.44
326 4 0.02
ACGTcount: A:0.53, C:0.08, G:0.12, T:0.27
Consensus pattern (320 bp):
AAAATGAATGAATTTTTAAAAACTCAATTAATATGAAATAAATGATAATGTTTGATGAATTCTAA
AAACTGAAAACCAAGAAAAATCCACTCAAAAAAATTTACGAAGTAGAAAACACTGTATTTCGAAA
AAAAAAATTCAAGGAAAAAATTCAAAAATAATGAAAATAAATAAATTTTTAAAACTGAATTAACA
TGAAATAAATAAAAATATTTGATAAATTTTAAAAATTAAAAACCAAAAAAATTCTCTCAAAAAAA
TCTACAGAGAAGAAAACACCGTATTTCGAAAAAAAAGGGAAGTTTCAAGGAAAAAAATAA
Found at i:123795 original size:159 final size:158
Alignment explanation
Indices: 123420--124021 Score: 633
Period size: 159 Copynumber: 3.7 Consensus size: 158
123410 AAAAAGAATG
* * * *
123420 AAAATGAATGAATTTTTAAAAACTGAATTAATATG-AATCAAATGATGATGTTTGATGAATTCTA
1 AAAATGAATGAATTTTTTAAAACTGAATTAATATGAAAT-AAATAATAATGTTTGATGAATTTTA
* * * ** * * * * *
123484 AAAACTGAAAACCAAGAAAAATCCACTCGCAAAAATTTACGGAGTAGAAAATATAGTATTTAGGA
65 AAAATTAAAAACCAAGAAAAATCCTCTCAAAAAAATTTACAGAGTAGAAAACACAGTATTTCGAA
123549 AAAAAAGAAGTTTCAAGGAAAAAATCAAAAATGAA
130 AAAAAAGAAGTTTCAAGG----AA--AAAAATGAA
* *
123584 TGAAAATGAATGAATTTTTGAAAACTGAATTAACATGAAATAAATAATAATGTTTGATGAATTTT
1 --AAAATGAATGAATTTTTTAAAACTGAATTAATATGAAATAAATAATAATGTTTGATGAATTTT
* * *
123649 AAAAATTAAAAACCAAGAAAAATTCTCTCAAAAAATTTTACAGAGTAGAAAACACCGTATTTCGA
64 AAAAATTAAAAACCAAGAAAAATCCTCTCAAAAAAATTTACAGAGTAGAAAACACAGTATTTCGA
123714 AAAAAAAGGGAAGTTTCAAGGAAAAAAAT-AA
129 AAAAAAA--GAAGTTTCAAGGAAAAAAATGAA
* *
123745 AAAATGAATGAATTTTTTAAAACTCAATTAATATGAAATAAATGATAATGTTTGATGAATTTTAA
1 AAAATGAATGAATTTTTTAAAACTGAATTAATATGAAATAAATAATAATGTTTGATGAATTTTAA
* * * *
123810 AAATTGAAAACCAAGAAAAATCCCCTCAAAAAAATTTA-TGAAGTAGAAAACACTGTATTTCGAA
66 AAATTAAAAACCAAGAAAAATCCTCTCAAAAAAATTTACAG-AGTAGAAAACACAGTATTTCGAA
*
123874 AAAAAA-AA--TTCAAGGAAAAAATTGAA
130 AAAAAAGAAGTTTCAAGGAAAAAAATGAA
** * * * *
123900 AGCTCATGAAAATAAATAAATTTTTAAAACTGAATTAATATGAAATAAATAAAAATATTTGATAA
1 A--AAATG--AATGAAT---TTTTTAAAACTGAATTAATATGAAATAAATAATAATGTTTGATGA
* ** * * * *
123965 ATTTTAAAGATTAAAAATTAA-AAAAATTCTCTTAAAAAAATCTACAGAGAAGAAAAC
59 ATTTTAAAAATTAAAAACCAAGAAAAATCCTCTCAAAAAAATTTACAGAGTAGAAAAC
124022 CCTGTAATTT
Statistics
Matches: 376, Mismatches: 47, Indels: 31
0.83 0.10 0.07
Matches are distributed among these distances:
154 14 0.04
155 3 0.01
156 2 0.01
157 3 0.01
158 1 0.00
159 129 0.34
161 30 0.08
162 64 0.17
164 2 0.01
166 113 0.30
167 3 0.01
168 12 0.03
ACGTcount: A:0.53, C:0.08, G:0.12, T:0.27
Consensus pattern (158 bp):
AAAATGAATGAATTTTTTAAAACTGAATTAATATGAAATAAATAATAATGTTTGATGAATTTTAA
AAATTAAAAACCAAGAAAAATCCTCTCAAAAAAATTTACAGAGTAGAAAACACAGTATTTCGAAA
AAAAAGAAGTTTCAAGGAAAAAAATGAA
Found at i:124548 original size:20 final size:20
Alignment explanation
Indices: 124519--124560 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
124509 TTTTTTGAGT
*
124519 TTTTTATAAAAATTTCAAAAA
1 TTTTTATAAAAATAT-AAAAA
124540 TTTTT-TAAAAATATAAAAA
1 TTTTTATAAAAATATAAAAA
124559 TT
1 TT
124561 GACTGTGATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 7 0.35
20 8 0.40
21 5 0.25
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (20 bp):
TTTTTATAAAAATATAAAAA
Found at i:125323 original size:9 final size:9
Alignment explanation
Indices: 125305--125335 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
125295 ACTAATTTTA
125305 AAAAATATC
1 AAAAATATC
*
125314 AAACATATC
1 AAAAATATC
125323 AAAAATATC
1 AAAAATATC
125332 AAAA
1 AAAA
125336 TAACGTATGC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.68, C:0.13, G:0.00, T:0.19
Consensus pattern (9 bp):
AAAAATATC
Found at i:127448 original size:10 final size:10
Alignment explanation
Indices: 127433--127528 Score: 56
Period size: 10 Copynumber: 9.3 Consensus size: 10
127423 TTTAAAAAAT
127433 TATATTTTTA
1 TATATTTTTA
127443 TATATTTTT-
1 TATATTTTTA
* *
127452 TAATATATTAA
1 T-ATATTTTTA
127463 TA-ATTTTTA
1 TATATTTTTA
127472 TTATATAAATTTT-
1 -TATAT---TTTTA
127485 TATATTTTTA
1 TATATTTTTA
* * *
127495 TAAAATTATA
1 TATATTTTTA
127505 TTATATTTTTA
1 -TATATTTTTA
127516 T-TAATTTTTA
1 TAT-ATTTTTA
127526 TAT
1 TAT
127529 TATATTATAT
Statistics
Matches: 65, Mismatches: 10, Indels: 21
0.68 0.10 0.22
Matches are distributed among these distances:
9 11 0.17
10 34 0.52
11 11 0.17
12 5 0.08
14 4 0.06
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (10 bp):
TATATTTTTA
Found at i:127496 original size:18 final size:18
Alignment explanation
Indices: 127432--127529 Score: 78
Period size: 18 Copynumber: 5.4 Consensus size: 18
127422 ATTTAAAAAA
*
127432 TTATATTTTTATATATTTT
1 TTATATTTTTATA-AATTT
* *
127451 TTAATATATTAAT-AA-TT
1 TT-ATATTTTTATAAATTT
*
127468 TT-TA-TTATATAAATTT
1 TTATATTTTTATAAATTT
127484 TTATATTTTTATAAAATTAT
1 TTATATTTTTAT-AAATT-T
*
127504 ATTATATTTTTATTAATTT
1 -TTATATTTTTATAAATTT
127523 TTATATT
1 TTATATT
127530 ATATTATATT
Statistics
Matches: 63, Mismatches: 8, Indels: 17
0.72 0.09 0.19
Matches are distributed among these distances:
14 3 0.05
15 4 0.06
16 4 0.06
17 6 0.10
18 13 0.21
19 8 0.13
20 13 0.21
21 12 0.19
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (18 bp):
TTATATTTTTATAAATTT
Found at i:127513 original size:28 final size:28
Alignment explanation
Indices: 127457--127542 Score: 88
Period size: 28 Copynumber: 3.0 Consensus size: 28
127447 TTTTTTAATA
*
127457 TATTAATAATTTT-TATTATA-TAAATTTT
1 TATTAAT--TTTTATATTATATTATATTTT
* *
127485 TA-TATTTTTATAAAATTATATTATATTTT
1 TATTAATTTT-T-ATATTATATTATATTTT
127514 TATTAATTTTTATATTATATTATATTTT
1 TATTAATTTTTATATTATATTATATTTT
127542 T
1 T
127543 TTTTCTTATT
Statistics
Matches: 48, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
25 3 0.06
26 1 0.02
27 3 0.06
28 25 0.52
29 10 0.21
30 6 0.12
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (28 bp):
TATTAATTTTTATATTATATTATATTTT
Found at i:127530 original size:23 final size:21
Alignment explanation
Indices: 127472--127534 Score: 67
Period size: 23 Copynumber: 3.0 Consensus size: 21
127462 ATAATTTTTA
127472 TTATATAAATT-T-TTATATTT
1 TTATA-AAATTATATTATATTT
127492 TTATAAAATTATATTATATTT
1 TTATAAAATTATATTATATTT
**
127513 TTATTAATTTTTATATTATATT
1 TTA-TAA-AATTATATTATATT
127535 ATATTTTTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
19 5 0.14
20 6 0.16
21 11 0.30
22 3 0.08
23 12 0.32
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (21 bp):
TTATAAAATTATATTATATTT
Found at i:127540 original size:18 final size:18
Alignment explanation
Indices: 127443--127542 Score: 64
Period size: 18 Copynumber: 5.5 Consensus size: 18
127433 TATATTTTTA
*
127443 TATATTTTT-TAATATAT
1 TATATTTTTATATTATAT
*
127460 TAATAATTTT-TATTATA-
1 T-ATATTTTTATATTATAT
* *
127477 TAAATTTTTATATTTTTAT
1 TATATTTTTATA-TTATAT
* * *
127496 AAAATTATATTATATTTTTAT
1 TATATT-T-TTATA-TTATAT
127517 TA-ATTTTTATATTATAT
1 TATATTTTTATATTATAT
127534 TATATTTTT
1 TATATTTTT
127543 TTTTCTTATT
Statistics
Matches: 68, Mismatches: 8, Indels: 13
0.76 0.09 0.15
Matches are distributed among these distances:
16 6 0.09
17 11 0.16
18 28 0.41
19 6 0.09
20 4 0.06
21 13 0.19
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (18 bp):
TATATTTTTATATTATAT
Found at i:127561 original size:28 final size:28
Alignment explanation
Indices: 127502--127561 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 28
127492 TTATAAAATT
* * *
127502 ATATTATATTTTTATTAATTTTTATATT
1 ATATTATATTTTTATTAATTATTAGATA
* **
127530 ATATTATATTTTTTTTTCTTATTAGATA
1 ATATTATATTTTTATTAATTATTAGATA
127558 ATAT
1 ATAT
127562 ATTCTTAAAT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.65
Consensus pattern (28 bp):
ATATTATATTTTTATTAATTATTAGATA
Found at i:131140 original size:2 final size:2
Alignment explanation
Indices: 131133--131172 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
131123 TTGAAGGGTA
131133 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
131173 CTAATCTTGT
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 36 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:132968 original size:16 final size:17
Alignment explanation
Indices: 132947--132989 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
132937 AAAATATATA
132947 TTTTAAAATTAT-AAAT
1 TTTTAAAATTATAAAAT
* *
132963 TTTT-AATTTTTAAAAT
1 TTTTAAAATTATAAAAT
132979 TTTTAAAATTA
1 TTTTAAAATTA
132990 AATAAATAAG
Statistics
Matches: 21, Mismatches: 4, Indels: 3
0.75 0.14 0.11
Matches are distributed among these distances:
15 5 0.24
16 12 0.57
17 4 0.19
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
TTTTAAAATTATAAAAT
Found at i:134059 original size:18 final size:19
Alignment explanation
Indices: 134036--134076 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
134026 TTAACATATT
134036 ATTAAAAAAT-TTAAATAA
1 ATTAAAAAATATTAAATAA
*
134054 ATTAAAAAATATTTAATAA
1 ATTAAAAAATATTAAATAA
134073 ATTA
1 ATTA
134077 TGTTTAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 10 0.48
19 11 0.52
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (19 bp):
ATTAAAAAATATTAAATAA
Found at i:134094 original size:12 final size:12
Alignment explanation
Indices: 134044--134122 Score: 60
Period size: 12 Copynumber: 6.8 Consensus size: 12
134034 TTATTAAAAA
134044 ATTT-AAATAA-
1 ATTTAAAATAAT
134054 A-TTAAAA-AAT
1 ATTTAAAATAAT
*
134064 ATTTAATAAATTAT
1 ATTT-A-AAATAAT
*
134078 GTTTAAAATAAT
1 ATTTAAAATAAT
* *
134090 ATTTACAGTAAT
1 ATTTAAAATAAT
134102 ATTTAAAATAAT
1 ATTTAAAATAAT
*
134114 -TTAAAAATA
1 ATTTAAAATA
134123 TGATTAACAA
Statistics
Matches: 54, Mismatches: 9, Indels: 11
0.73 0.12 0.15
Matches are distributed among these distances:
9 4 0.07
10 5 0.09
11 10 0.19
12 26 0.48
13 4 0.07
14 5 0.09
ACGTcount: A:0.56, C:0.01, G:0.03, T:0.41
Consensus pattern (12 bp):
ATTTAAAATAAT
Found at i:135140 original size:2 final size:2
Alignment explanation
Indices: 135133--135161 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
135123 AATATTGAAT
135133 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
135162 CACTTCATCG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:136561 original size:29 final size:29
Alignment explanation
Indices: 136519--136577 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
136509 TCAACCTAAT
136519 CCATTGCTAACTTCGAACTATTTTTCTTA
1 CCATTGCTAACTTCGAACTATTTTTCTTA
136548 CCATTGCTAACTTCGAACTATTTTTCTTA
1 CCATTGCTAACTTCGAACTATTTTTCTTA
136577 C
1 C
136578 TTTCATTCAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.24, C:0.25, G:0.07, T:0.44
Consensus pattern (29 bp):
CCATTGCTAACTTCGAACTATTTTTCTTA
Found at i:137380 original size:16 final size:16
Alignment explanation
Indices: 137337--137414 Score: 68
Period size: 16 Copynumber: 4.8 Consensus size: 16
137327 TAATTATTTT
137337 TTTAGATTTATTTTAAA
1 TTTAGA-TTATTTTAAA
* * *
137354 TTCAAACTATTTTAAA
1 TTTAGATTATTTTAAA
* *
137370 TTTAGATTATTTGAGA
1 TTTAGATTATTTTAAA
* *
137386 TTTATATTATTTTATA
1 TTTAGATTATTTTAAA
137402 TTTA-AGTTATTTT
1 TTTAGA-TTATTTT
137415 TAGTTAAAAT
Statistics
Matches: 49, Mismatches: 11, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
15 1 0.02
16 44 0.90
17 4 0.08
ACGTcount: A:0.33, C:0.03, G:0.06, T:0.58
Consensus pattern (16 bp):
TTTAGATTATTTTAAA
Found at i:137445 original size:16 final size:16
Alignment explanation
Indices: 137402--137451 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 16
137392 TTATTTTATA
*
137402 TTTAAGTTATTTTTAG
1 TTTAAGTTATTTTGAG
* * * *
137418 TTAAAATCATTTAGAG
1 TTTAAGTTATTTTGAG
137434 TTTAAGTTATTTTGAG
1 TTTAAGTTATTTTGAG
137450 TT
1 TT
137452 ATGATCATTT
Statistics
Matches: 25, Mismatches: 9, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.30, C:0.02, G:0.14, T:0.54
Consensus pattern (16 bp):
TTTAAGTTATTTTGAG
Found at i:137470 original size:32 final size:32
Alignment explanation
Indices: 137395--137477 Score: 94
Period size: 32 Copynumber: 2.6 Consensus size: 32
137385 ATTTATATTA
*
137395 TTTTATATTTAAGTTATTTTTAGTTAAAATCAT
1 TTTTA-ATTTAAGTTATTTTGAGTTAAAATCAT
** * **
137428 TTAGAGTTTAAGTTATTTTGAGTTATGATCAT
1 TTTTAATTTAAGTTATTTTGAGTTAAAATCAT
*
137460 TTTTAATTTAAATTATTT
1 TTTTAATTTAAGTTATTT
137478 CAAGTTTGAA
Statistics
Matches: 40, Mismatches: 10, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
32 37 0.93
33 3 0.08
ACGTcount: A:0.31, C:0.02, G:0.10, T:0.57
Consensus pattern (32 bp):
TTTTAATTTAAGTTATTTTGAGTTAAAATCAT
Found at i:138344 original size:7 final size:7
Alignment explanation
Indices: 138334--138360 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
138324 AAAATTAAAA
138334 TTTTTAT
1 TTTTTAT
138341 TTTTTAT
1 TTTTTAT
138348 TTTTTAT
1 TTTTTAT
138355 TTTTTA
1 TTTTTA
138361 AAAATAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (7 bp):
TTTTTAT
Found at i:139626 original size:3 final size:3
Alignment explanation
Indices: 139618--139648 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
139608 AGAAACCCCC
139618 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
139649 TCATTTTAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:143830 original size:16 final size:16
Alignment explanation
Indices: 143811--143844 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
143801 GTAATTATTT
143811 TTTTAATATTATATAA
1 TTTTAATATTATATAA
*
143827 TTTTAATATTTTATAA
1 TTTTAATATTATATAA
143843 TT
1 TT
143845 ATTTATATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
TTTTAATATTATATAA
Found at i:143855 original size:16 final size:15
Alignment explanation
Indices: 143811--143855 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 15
143801 GTAATTATTT
143811 TTTTAATATTATATAA
1 TTTTAATATT-TATAA
143827 TTTTAATATTTTATAA
1 TTTTAATA-TTTATAA
*
143843 TTATTTATATTTA
1 TT-TTAATATTTA
143856 AACACATATC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
16 19 0.73
17 7 0.27
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (15 bp):
TTTTAATATTTATAA
Found at i:144853 original size:19 final size:19
Alignment explanation
Indices: 144831--144870 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
144821 GTTTAACTAT
*
144831 TTATTATATTATTAAAATA
1 TTATTATAATATTAAAATA
* *
144850 TTATTTTAATATTAATATA
1 TTATTATAATATTAAAATA
144869 TT
1 TT
144871 TATATATTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (19 bp):
TTATTATAATATTAAAATA
Found at i:144939 original size:15 final size:17
Alignment explanation
Indices: 144907--144943 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
144897 AATAATTTTT
*
144907 AAATTTATATTTTTTAA
1 AAATTTATATTTTATAA
144924 AAATTTA-A-TTTATAA
1 AAATTTATATTTTATAA
144939 AAATT
1 AAATT
144944 GAATAGATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 11 0.58
16 1 0.05
17 7 0.37
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
AAATTTATATTTTATAA
Found at i:146115 original size:24 final size:26
Alignment explanation
Indices: 146064--146121 Score: 84
Period size: 24 Copynumber: 2.3 Consensus size: 26
146054 TGGGTGGCTA
*
146064 GTCAACAAAAGCCACCCTTTGTGTTT
1 GTCAACAAAAGCCACCCTATGTGTTT
*
146090 GTCAACAAAAGTCA-CC-ATGTGTTT
1 GTCAACAAAAGCCACCCTATGTGTTT
146114 GTCAACAA
1 GTCAACAA
146122 TGGTGGTTAC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
24 15 0.50
25 2 0.07
26 13 0.43
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.28
Consensus pattern (26 bp):
GTCAACAAAAGCCACCCTATGTGTTT
Found at i:146150 original size:27 final size:27
Alignment explanation
Indices: 146111--146176 Score: 96
Period size: 27 Copynumber: 2.4 Consensus size: 27
146101 TCACCATGTG
*
146111 TTTGTCAACAATGGTGGTTACTTTGTA
1 TTTGTCAAAAATGGTGGTTACTTTGTA
* * *
146138 TTTGTCAAAAATGGTGGTTCCTTTTTG
1 TTTGTCAAAAATGGTGGTTACTTTGTA
146165 TTTGTCAAAAAT
1 TTTGTCAAAAAT
146177 TATGGCTTGT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.24, C:0.11, G:0.20, T:0.45
Consensus pattern (27 bp):
TTTGTCAAAAATGGTGGTTACTTTGTA
Found at i:150710 original size:24 final size:26
Alignment explanation
Indices: 150659--150716 Score: 93
Period size: 24 Copynumber: 2.3 Consensus size: 26
150649 TGGGTGGCTA
*
150659 GTCAACAAAAGCCACCCTTTGTGTTT
1 GTCAACAAAAGCCACCCTATGTGTTT
150685 GTCAACAAAAGCCA-CC-ATGTGTTT
1 GTCAACAAAAGCCACCCTATGTGTTT
150709 GTCAACAA
1 GTCAACAA
150717 TGGTGGTTAC
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 15 0.48
25 2 0.06
26 14 0.45
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.26
Consensus pattern (26 bp):
GTCAACAAAAGCCACCCTATGTGTTT
Found at i:150745 original size:27 final size:27
Alignment explanation
Indices: 150706--150771 Score: 96
Period size: 27 Copynumber: 2.4 Consensus size: 27
150696 CCACCATGTG
*
150706 TTTGTCAACAATGGTGGTTACTTTGTA
1 TTTGTCAAAAATGGTGGTTACTTTGTA
* * *
150733 TTTGTCAAAAATGGTGGTTCCTTTTTG
1 TTTGTCAAAAATGGTGGTTACTTTGTA
150760 TTTGTCAAAAAT
1 TTTGTCAAAAAT
150772 TATGGCTTGT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.24, C:0.11, G:0.20, T:0.45
Consensus pattern (27 bp):
TTTGTCAAAAATGGTGGTTACTTTGTA
Found at i:150789 original size:24 final size:24
Alignment explanation
Indices: 150757--150802 Score: 76
Period size: 24 Copynumber: 1.9 Consensus size: 24
150747 TGGTTCCTTT
150757 TTGTTTGTCAAAAATT-ATGGCTTG
1 TTGTTTGTC-AAAATTGATGGCTTG
150781 TTGTTTGTCAAAATTGATGGCT
1 TTGTTTGTCAAAATTGATGGCT
150803 AATTTTTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 6 0.29
24 15 0.71
ACGTcount: A:0.24, C:0.09, G:0.22, T:0.46
Consensus pattern (24 bp):
TTGTTTGTCAAAATTGATGGCTTG
Found at i:155686 original size:2 final size:2
Alignment explanation
Indices: 155671--155719 Score: 80
Period size: 2 Copynumber: 24.5 Consensus size: 2
155661 CCATACATAC
* *
155671 AT AT AT AC AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
155713 AT AT AT A
1 AT AT AT A
155720 GATTCCCACA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:167410 original size:18 final size:18
Alignment explanation
Indices: 167370--167408 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
167360 TTATATAGTG
167370 AAAATAATATTTTTATAT
1 AAAATAATATTTTTATAT
*
167388 CAAATAATATTTTTAT-T
1 AAAATAATATTTTTATAT
167405 AAAA
1 AAAA
167409 ATTAAAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 4 0.21
18 15 0.79
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (18 bp):
AAAATAATATTTTTATAT
Found at i:169238 original size:9 final size:10
Alignment explanation
Indices: 169224--169293 Score: 51
Period size: 10 Copynumber: 7.3 Consensus size: 10
169214 TGTATGTTAA
169224 TATTA-ATTT
1 TATTATATTT
*
169233 TATTAAATTT
1 TATTATATTT
*
169243 TAATTATTTTT
1 T-ATTATATTT
169254 TATTATATTT
1 TATTATATTT
*
169264 TAATT-TATCT
1 T-ATTATATTT
169274 TA-TAT-TTT
1 TATTATATTT
*
169282 T-TTATAATT
1 TATTATATTT
169291 TAT
1 TAT
169294 CGTAATGATA
Statistics
Matches: 48, Mismatches: 6, Indels: 13
0.72 0.09 0.19
Matches are distributed among these distances:
8 7 0.15
9 10 0.21
10 20 0.42
11 11 0.23
ACGTcount: A:0.31, C:0.01, G:0.00, T:0.67
Consensus pattern (10 bp):
TATTATATTT
Found at i:169279 original size:22 final size:22
Alignment explanation
Indices: 169233--169294 Score: 65
Period size: 22 Copynumber: 2.9 Consensus size: 22
169223 ATATTAATTT
* * *
169233 TATTAAATTTTAA-TTATTTTT
1 TATTATATTTTAATTTATCTTA
169254 TATTATATTTTAATTTATCTTA
1 TATTATATTTTAATTTATCTTA
*
169276 TATT-TTTTTATAATTTATC
1 TATTATATTT-TAATTTATC
169295 GTAATGATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
21 16 0.46
22 19 0.54
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (22 bp):
TATTATATTTTAATTTATCTTA
Found at i:170939 original size:2 final size:2
Alignment explanation
Indices: 170934--170975 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
170924 TCGGATTTTT
*
170934 TA TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
170976 AAAGAGTAAG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:172321 original size:17 final size:16
Alignment explanation
Indices: 172292--172325 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
172282 CTCTATCACT
*
172292 TATTTTTTTTAAAAAA
1 TATTTTTTATAAAAAA
172308 TATTTTTCTATAAAAAA
1 TATTTTT-TATAAAAAA
172325 T
1 T
172326 TTAATTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (16 bp):
TATTTTTTATAAAAAA
Found at i:173672 original size:9 final size:9
Alignment explanation
Indices: 173616--173689 Score: 50
Period size: 9 Copynumber: 8.6 Consensus size: 9
173606 AATATGATTA
*
173616 ATTTAAAAT
1 ATTTAATAT
*
173625 ATTTAATAC
1 ATTTAATAT
* *
173634 ATATATTAT
1 ATTTAATAT
173643 A-TT--TAT
1 ATTTAATAT
*
173649 ATTTAAAAT
1 ATTTAATAT
173658 -TTTAATAT
1 ATTTAATAT
173666 ATTTAATA-
1 ATTTAATAT
173674 ATTTATATTAT
1 ATTTA-A-TAT
173685 ATTTA
1 ATTTA
173690 TATTTACATA
Statistics
Matches: 50, Mismatches: 8, Indels: 12
0.71 0.11 0.17
Matches are distributed among these distances:
6 4 0.08
7 2 0.04
8 13 0.26
9 24 0.48
10 2 0.04
11 5 0.10
ACGTcount: A:0.45, C:0.01, G:0.00, T:0.54
Consensus pattern (9 bp):
ATTTAATAT
Found at i:173687 original size:19 final size:18
Alignment explanation
Indices: 173639--173689 Score: 68
Period size: 19 Copynumber: 2.8 Consensus size: 18
173629 AATACATATA
173639 TTATATTTATATTTAAAAT
1 TTATA-TTATATTTAAAAT
*
173658 TT-TAATATATTTAATAAT
1 TTATATTATATTTAA-AAT
173676 TTATATTATATTTA
1 TTATATTATATTTA
173690 TATTTACATA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
17 9 0.32
18 7 0.25
19 12 0.43
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (18 bp):
TTATATTATATTTAAAAT
Found at i:173691 original size:42 final size:41
Alignment explanation
Indices: 173617--173695 Score: 124
Period size: 42 Copynumber: 1.9 Consensus size: 41
173607 ATATGATTAA
173617 TTTAAAATATTTAATACATATATTATATTTATATTTAAAAT
1 TTTAAAATATTTAATACATATATTATATTTATATTTAAAAT
*
173658 TTTAATATATTTAATA-ATTTATATTATATTTATATTTA
1 TTTAAAATATTTAATACA--TATATTATATTTATATTTA
173696 CATAACTGAA
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
40 1 0.03
41 15 0.43
42 19 0.54
ACGTcount: A:0.43, C:0.01, G:0.00, T:0.56
Consensus pattern (41 bp):
TTTAAAATATTTAATACATATATTATATTTATATTTAAAAT
Found at i:173694 original size:17 final size:18
Alignment explanation
Indices: 173634--173695 Score: 65
Period size: 17 Copynumber: 3.4 Consensus size: 18
173624 TATTTAATAC
173634 ATATATTATATTTATATTTA
1 ATAT-TTATA-TTATATTTA
* *
173654 AAATTT-TAATATATTTA
1 ATATTTATATTATATTTA
173671 ATAATTTATATTATATTT-
1 AT-ATTTATATTATATTTA
173689 ATATTTA
1 ATATTTA
173696 CATAACTGAA
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
17 14 0.39
18 8 0.22
19 11 0.31
20 3 0.08
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (18 bp):
ATATTTATATTATATTTA
Found at i:174918 original size:3 final size:3
Alignment explanation
Indices: 174910--174948 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
174900 TCCATACAAG
174910 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
174949 TATTAAAAGA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:175338 original size:19 final size:20
Alignment explanation
Indices: 175299--175340 Score: 61
Period size: 19 Copynumber: 2.1 Consensus size: 20
175289 CGGTAACGAT
175299 TTAAAAATTTTGACAATATA
1 TTAAAAATTTTGACAATATA
175319 TTAAATAATTTT-AC-ATATA
1 TTAAA-AATTTTGACAATATA
175338 TTA
1 TTA
175341 TTATTATTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 8 0.38
20 7 0.33
21 6 0.29
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.45
Consensus pattern (20 bp):
TTAAAAATTTTGACAATATA
Found at i:176210 original size:2 final size:2
Alignment explanation
Indices: 176205--176234 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
176195 TGGATGCAAG
176205 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
176235 TCTTATTAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:176604 original size:24 final size:24
Alignment explanation
Indices: 176577--176624 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
176567 TCAGAATTTG
*
176577 AGCAAAAAAATATAAATATTTATA
1 AGCAAAAAAATATAAATATATATA
**
176601 AGCACCAAAATATAAATATATATA
1 AGCAAAAAAATATAAATATATATA
176625 TATATATATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.60, C:0.08, G:0.04, T:0.27
Consensus pattern (24 bp):
AGCAAAAAAATATAAATATATATA
Found at i:176666 original size:2 final size:2
Alignment explanation
Indices: 176610--176647 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
176600 AAGCACCAAA
*
176610 AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
176648 CTGAAACCAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:177035 original size:2 final size:2
Alignment explanation
Indices: 177028--177061 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
177018 GACAATGTAT
*
177028 TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA CA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
177062 CTTAAAATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:180056 original size:2 final size:2
Alignment explanation
Indices: 180045--180078 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
180035 AATCTGCAAG
180045 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
180079 TATCTAGGAC
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:182099 original size:27 final size:27
Alignment explanation
Indices: 182067--182123 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
182057 TAATTAAAAA
* *
182067 TTATTTAAT-TATTATTTTTTTAAAATT
1 TTATTTAATGCATTA-TTTTATAAAATT
182094 TTATTTAATGCATTATTTTATAAAATT
1 TTATTTAATGCATTATTTTATAAAATT
182121 TTA
1 TTA
182124 AAAATAATTC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
27 23 0.85
28 4 0.15
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (27 bp):
TTATTTAATGCATTATTTTATAAAATT
Found at i:182693 original size:3 final size:3
Alignment explanation
Indices: 182687--182715 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
182677 AATTTGGAGC
182687 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
182716 TCGAGGAGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:183001 original size:3 final size:3
Alignment explanation
Indices: 182993--183031 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
182983 TTGATCATTC
182993 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
183032 TCTAAGAGTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:183163 original size:19 final size:19
Alignment explanation
Indices: 183141--183192 Score: 54
Period size: 19 Copynumber: 2.7 Consensus size: 19
183131 GTAAAATTAA
*
183141 ATTATTTTATATATTTTTT
1 ATTATTTTATATATTTATT
183160 ATTACTTTT-TATA-TTATT
1 ATTA-TTTTATATATTTATT
*
183178 AATATTTTAATATAT
1 ATTATTTT-ATATAT
183193 CGTTAGAGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
17 4 0.15
18 7 0.26
19 12 0.44
20 4 0.15
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (19 bp):
ATTATTTTATATATTTATT
Found at i:183183 original size:21 final size:21
Alignment explanation
Indices: 183136--183183 Score: 50
Period size: 19 Copynumber: 2.4 Consensus size: 21
183126 TTAATGTAAA
183136 ATTAA-ATTATTTTATATATT
1 ATTAATATTATTTTATATATT
*
183156 -TT-TTATTACTTTT-TATATT
1 ATTAATATTA-TTTTATATATT
183175 ATTAATATT
1 ATTAATATT
183184 TTAATATATC
Statistics
Matches: 22, Mismatches: 2, Indels: 7
0.71 0.06 0.23
Matches are distributed among these distances:
19 12 0.55
20 6 0.27
21 4 0.18
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (21 bp):
ATTAATATTATTTTATATATT
Found at i:183677 original size:3 final size:3
Alignment explanation
Indices: 183669--183703 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
183659 AAATGCCTAT
183669 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
183704 TTATTTTTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:183716 original size:3 final size:3
Alignment explanation
Indices: 183704--183738 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
183694 TAATAATAAT
*
183704 TTA TTT TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
183739 TTGAGGTGTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (3 bp):
TTA
Found at i:184694 original size:3 final size:3
Alignment explanation
Indices: 184688--184738 Score: 102
Period size: 3 Copynumber: 17.0 Consensus size: 3
184678 GTAAAACGTA
184688 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
184736 ATT
1 ATT
184739 TGTCCCAACT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:185860 original size:20 final size:20
Alignment explanation
Indices: 185837--185880 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
185827 AAATATATTT
* *
185837 TATATAGAATTATTATAAAA
1 TATATAAAATTAATATAAAA
*
185857 TATACAAAATTAATATAAAA
1 TATATAAAATTAATATAAAA
185877 -ATAT
1 TATAT
185881 TTCAATATTT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
19 3 0.15
20 17 0.85
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.36
Consensus pattern (20 bp):
TATATAAAATTAATATAAAA
Found at i:187014 original size:196 final size:195
Alignment explanation
Indices: 186680--187075 Score: 731
Period size: 196 Copynumber: 2.0 Consensus size: 195
186670 TAGTTTTTAA
*
186680 AATTTATTCAGTCTGAATTTAGGTCATTCAATGTAAAAAGTCAAATTGAAAGAAATTTAATTAAT
1 AATTTATTCAATCTGAATTTAGGTCATTCAATGTAAAAAGTCAAATTGAAAGAAATTTAATTAAT
186745 TAATTCTTATTTCTTTACTATAAAATAAGTGATATACCTTAAGTAAAAAAGCAATATTTTATTTT
66 TAATTCTTATTTCTTTACTATAAAATAAGTGATATACCTTAAGTAAAAAAGCAATATTTTATTTT
186810 ATTTTCAAAAAATGTAAAATTTGTA-TTTTTAAGGGTTTTTTTTATTTTAAGTTAATATTATTTC
131 ATTTTCAAAAAATGTAAAATTTGTATTTTTTAAGGG-TTTTTTTATTTTAAG-TAATATTATTTC
186874 AT
194 AT
* *
186876 AATTTATTCAATTTGAATTTAGGTCATTCAATGTAAAAAGTCGAATTGAAAGAAATTTAATTAAT
1 AATTTATTCAATCTGAATTTAGGTCATTCAATGTAAAAAGTCAAATTGAAAGAAATTTAATTAAT
*
186941 TAATTCTTATTTCTTTACTATAAAATGAGTGATATACCTTAAGTAAAAAAGCAATATTTTATTTT
66 TAATTCTTATTTCTTTACTATAAAATAAGTGATATACCTTAAGTAAAAAAGCAATATTTTATTTT
187006 ATTTTCAAAAAATGTAAAATTTGTATTTTTTAAGGGTTTTTTTATTTTAAGTAATATTATTTCAT
131 ATTTTCAAAAAATGTAAAATTTGTATTTTTTAAGGGTTTTTTTATTTTAAGTAATATTATTTCAT
187071 AATTT
1 AATTT
187076 CTTAACTTAT
Statistics
Matches: 195, Mismatches: 4, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
195 19 0.10
196 166 0.85
197 10 0.05
ACGTcount: A:0.39, C:0.06, G:0.09, T:0.46
Consensus pattern (195 bp):
AATTTATTCAATCTGAATTTAGGTCATTCAATGTAAAAAGTCAAATTGAAAGAAATTTAATTAAT
TAATTCTTATTTCTTTACTATAAAATAAGTGATATACCTTAAGTAAAAAAGCAATATTTTATTTT
ATTTTCAAAAAATGTAAAATTTGTATTTTTTAAGGGTTTTTTTATTTTAAGTAATATTATTTCAT
Found at i:187765 original size:17 final size:15
Alignment explanation
Indices: 187735--187777 Score: 59
Period size: 17 Copynumber: 2.7 Consensus size: 15
187725 TTCTTTAAAA
187735 AATATTAAATATTTT
1 AATATTAAATATTTT
187750 AATATTTAATATATTTT
1 AATA-TTAA-ATATTTT
*
187767 AAAATTAAATA
1 AATATTAAATA
187778 AAATAATATT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
15 7 0.28
16 8 0.32
17 10 0.40
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (15 bp):
AATATTAAATATTTT
Found at i:189371 original size:19 final size:18
Alignment explanation
Indices: 189349--189394 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
189339 TGTATATAAT
* *
189349 AAAATTTATAATATATTTA
1 AAAATTAATAA-ATAATTA
189368 AAAAGTTAATAAATAATTA
1 AAAA-TTAATAAATAATTA
189387 AAAATTAA
1 AAAATTAA
189395 AATAAATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 4 0.17
19 14 0.58
20 6 0.25
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (18 bp):
AAAATTAATAAATAATTA
Found at i:193494 original size:22 final size:21
Alignment explanation
Indices: 193468--193510 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
193458 AATAATAAAT
* *
193468 TTTATTTTTATATTAATATTTA
1 TTTATTTTAAAATTAAT-TTTA
193490 TTTATTTTAAAATTAATTTTA
1 TTTATTTTAAAATTAATTTTA
193511 AAATAAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (21 bp):
TTTATTTTAAAATTAATTTTA
Found at i:194040 original size:2 final size:2
Alignment explanation
Indices: 194033--194141 Score: 75
Period size: 2 Copynumber: 54.5 Consensus size: 2
194023 AAAGAACCAT
*
194033 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TGA -A CCA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA -TA
* * * * *
194076 T- TA TA TA TT TA TA TA CA TA TA TA AA TGA -A CCA -A TA AA TA T-
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA -TA TA TA TA TA TA
*
194116 TCA TA TA CA TA TA TA TA TA TA TA TA T
1 T-A TA TA TA TA TA TA TA TA TA TA TA T
194142 GCAGCAAAAG
Statistics
Matches: 86, Mismatches: 11, Indels: 20
0.74 0.09 0.17
Matches are distributed among these distances:
1 5 0.06
2 76 0.88
3 5 0.06
ACGTcount: A:0.49, C:0.06, G:0.02, T:0.43
Consensus pattern (2 bp):
TA
Found at i:194081 original size:32 final size:32
Alignment explanation
Indices: 194044--194135 Score: 112
Period size: 32 Copynumber: 2.8 Consensus size: 32
194034 ATATATATAT
194044 ATATATATATATATATATATATATATGAACCA
1 ATATATATATATATATATATATATATGAACCA
* * * *
194076 TTATATATTTATATACATATATAAATGAACCA
1 ATATATATATATATATATATATATATGAACCA
* *
194108 ATAAATATTCATATACATATATATATAT
1 ATATATA-T-ATATATATATATATATAT
194136 ATATATGCAG
Statistics
Matches: 48, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
32 33 0.69
33 1 0.02
34 14 0.29
ACGTcount: A:0.49, C:0.08, G:0.02, T:0.41
Consensus pattern (32 bp):
ATATATATATATATATATATATATATGAACCA
Found at i:195681 original size:4 final size:4
Alignment explanation
Indices: 195674--195716 Score: 52
Period size: 4 Copynumber: 10.2 Consensus size: 4
195664 ATGTATGAAG
195674 GAAA GAAA GAGAA GAAAA GAAA CG-AA GAAA GAAA GAAA GAAA G
1 GAAA GAAA GA-AA G-AAA GAAA -GAAA GAAA GAAA GAAA GAAA G
195717 GAAAAAAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
3 1 0.03
4 26 0.74
5 7 0.20
6 1 0.03
ACGTcount: A:0.70, C:0.02, G:0.28, T:0.00
Consensus pattern (4 bp):
GAAA
Found at i:195841 original size:31 final size:33
Alignment explanation
Indices: 195798--195860 Score: 85
Period size: 31 Copynumber: 2.0 Consensus size: 33
195788 ATATTATAAA
*
195798 TTTATATAAATTTTAATAGGATAATA-ATTTAT
1 TTTATATAAATTTTAATACGATAATATATTTAT
* *
195830 TTTAT-TAAATTTTGATACGTTAATATATTTA
1 TTTATATAAATTTTAATACGATAATATATTTA
195861 AATAGTATTC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
31 17 0.63
32 10 0.37
ACGTcount: A:0.40, C:0.02, G:0.06, T:0.52
Consensus pattern (33 bp):
TTTATATAAATTTTAATACGATAATATATTTAT
Found at i:195898 original size:14 final size:13
Alignment explanation
Indices: 195879--195920 Score: 50
Period size: 14 Copynumber: 3.2 Consensus size: 13
195869 TCATATTATG
195879 TTTTTATATCATAT
1 TTTTTATAT-ATAT
*
195893 TTTTTAAAT-TAT
1 TTTTTATATATAT
195905 TTTTTATATTATAT
1 TTTTTATA-TATAT
195919 TT
1 TT
195921 ACATCATATC
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
12 10 0.42
13 1 0.04
14 13 0.54
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (13 bp):
TTTTTATATATAT
Found at i:196320 original size:6 final size:6
Alignment explanation
Indices: 196309--196333 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
196299 AGGGATTCAA
196309 TAAAAT TAAAAT TAAAAT TAAAAT T
1 TAAAAT TAAAAT TAAAAT TAAAAT T
196334 TTAAATTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (6 bp):
TAAAAT
Found at i:196921 original size:21 final size:22
Alignment explanation
Indices: 196892--196932 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
196882 TATATAATAT
*
196892 TTAACATATTTAT-ATTTTTAA
1 TTAAAATATTTATAATTTTTAA
196913 TTAAAATATTTATAATTTTT
1 TTAAAATATTTATAATTTTT
196933 TCTTTATCCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (22 bp):
TTAAAATATTTATAATTTTTAA
Found at i:199306 original size:11 final size:10
Alignment explanation
Indices: 199287--199339 Score: 58
Period size: 10 Copynumber: 5.4 Consensus size: 10
199277 ATCGAAGTGT
199287 TTTTATATTA
1 TTTTATATTA
199297 TTTCTATATTA
1 TTT-TATATTA
199308 TTTTATATT-
1 TTTTATATTA
*
199317 TTATGATA-TA
1 TT-TTATATTA
199327 TTTTA-ATTA
1 TTTTATATTA
199336 TTTT
1 TTTT
199340 TTTTATCATT
Statistics
Matches: 37, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
8 1 0.03
9 11 0.30
10 15 0.41
11 10 0.27
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.68
Consensus pattern (10 bp):
TTTTATATTA
Found at i:199339 original size:21 final size:19
Alignment explanation
Indices: 199287--199339 Score: 56
Period size: 21 Copynumber: 2.7 Consensus size: 19
199277 ATCGAAGTGT
199287 TTTTATATTATTTCTATATTA
1 TTTTA-ATTATTT-TATATTA
199308 TTTT-A-TATTTTATGATATA
1 TTTTAATTATTTTAT-AT-TA
199327 TTTTAATTATTTT
1 TTTTAATTATTTT
199340 TTTTATCATT
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
17 3 0.11
18 7 0.25
19 7 0.25
20 1 0.04
21 10 0.36
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.68
Consensus pattern (19 bp):
TTTTAATTATTTTATATTA
Found at i:199719 original size:3 final size:3
Alignment explanation
Indices: 199711--199740 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
199701 AACATATTCC
199711 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
199741 GCCACATGTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:200058 original size:3 final size:3
Alignment explanation
Indices: 200050--200075 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
200040 CCCACTTCTT
200050 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
200076 TCAATTTTCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:200225 original size:17 final size:16
Alignment explanation
Indices: 200194--200227 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
200184 ATTATATTTT
*
200194 TATATTTATATTTAAA
1 TATATTTAAATTTAAA
200210 TATATATTAAATTTAAA
1 TATAT-TTAAATTTAAA
200227 T
1 T
200228 GTTAGATATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
TATATTTAAATTTAAA
Found at i:201437 original size:20 final size:20
Alignment explanation
Indices: 201414--201451 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
201404 CTAAAAAGTA
*
201414 TTAAAAAATCAAAAAATAAT
1 TTAAAAAATAAAAAAATAAT
*
201434 TTAAAATATAAAAAAATA
1 TTAAAAAATAAAAAAATA
201452 GAAATTATGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (20 bp):
TTAAAAAATAAAAAAATAAT
Found at i:205865 original size:3 final size:3
Alignment explanation
Indices: 205857--205898 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
205847 CTATAATTGC
205857 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
205899 TTTAAAAGTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:205939 original size:7 final size:7
Alignment explanation
Indices: 205924--205958 Score: 61
Period size: 7 Copynumber: 5.0 Consensus size: 7
205914 TTTATAAAAA
*
205924 TAAATTT
1 TAAAATT
205931 TAAAATT
1 TAAAATT
205938 TAAAATT
1 TAAAATT
205945 TAAAATT
1 TAAAATT
205952 TAAAATT
1 TAAAATT
205959 ATTAAATATT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (7 bp):
TAAAATT
Found at i:209088 original size:20 final size:21
Alignment explanation
Indices: 209063--209104 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
209053 TCAAAAGTTG
209063 GTGAATGTAAAGT-TAATTTT
1 GTGAATGTAAAGTATAATTTT
* *
209083 GTGAATTTAAATTATAATTTT
1 GTGAATGTAAAGTATAATTTT
209104 G
1 G
209105 AGTTTTTGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.36, C:0.00, G:0.17, T:0.48
Consensus pattern (21 bp):
GTGAATGTAAAGTATAATTTT
Found at i:209317 original size:31 final size:32
Alignment explanation
Indices: 209256--209318 Score: 94
Period size: 31 Copynumber: 2.0 Consensus size: 32
209246 AAATTAGTTT
*
209256 TTTTATTTAAATTTATTTTTTAAATTTAATAA
1 TTTTATTTAAATTTATTTTTAAAATTTAATAA
209288 TTTTATTTAAA-TT-TTTTTAAATATTTAATAA
1 TTTTATTTAAATTTATTTTTAAA-ATTTAATAA
209319 ACTTTCAAAC
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
30 7 0.24
31 11 0.38
32 11 0.38
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (32 bp):
TTTTATTTAAATTTATTTTTAAAATTTAATAA
Found at i:209908 original size:14 final size:14
Alignment explanation
Indices: 209870--209901 Score: 50
Period size: 12 Copynumber: 2.4 Consensus size: 14
209860 TTATCATATT
209870 AATTTAAT-TT-AA
1 AATTTAATATTAAA
209882 AATTTAATATTAAA
1 AATTTAATATTAAA
209896 AATTTA
1 AATTTA
209902 TGATTAATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 8 0.44
13 2 0.11
14 8 0.44
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (14 bp):
AATTTAATATTAAA
Found at i:210843 original size:12 final size:12
Alignment explanation
Indices: 210826--210861 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
210816 CTTAAATTTA
210826 GAGAAAAAAAAG
1 GAGAAAAAAAAG
210838 GAGAAAAAAAAAG
1 GAG-AAAAAAAAG
*
210851 GGGAAAAAAAA
1 GAGAAAAAAAA
210862 ACTCACCTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 11 0.50
13 11 0.50
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (12 bp):
GAGAAAAAAAAG
Found at i:210847 original size:13 final size:13
Alignment explanation
Indices: 210829--210862 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
210819 AAATTTAGAG
210829 AAAAAAAAGGAGA
1 AAAAAAAAGGAGA
*
210842 AAAAAAAAGGGGA
1 AAAAAAAAGGAGA
210855 AAAAAAAA
1 AAAAAAAA
210863 CTCACCTTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (13 bp):
AAAAAAAAGGAGA
Found at i:214382 original size:7 final size:7
Alignment explanation
Indices: 214370--214410 Score: 52
Period size: 7 Copynumber: 6.3 Consensus size: 7
214360 TTTCTCGACC
214370 TTTTCCT
1 TTTTCCT
214377 TTTTCCT
1 TTTTCCT
*
214384 TTTTTC-
1 TTTTCCT
214390 TTTTCCT
1 TTTTCCT
214397 TTTT--T
1 TTTTCCT
214402 TTTTCCT
1 TTTTCCT
214409 TT
1 TT
214411 ATTATTATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
5 5 0.17
6 5 0.17
7 19 0.66
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (7 bp):
TTTTCCT
Found at i:214386 original size:13 final size:12
Alignment explanation
Indices: 214377--214410 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
214367 ACCTTTTCCT
214377 TTTTCCTTTTTTC
1 TTTTCC-TTTTTC
*
214390 TTTTCCTTTTTT
1 TTTTCCTTTTTC
214402 TTTTCCTTT
1 TTTTCCTTT
214411 ATTATTATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 14 0.70
13 6 0.30
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (12 bp):
TTTTCCTTTTTC
Found at i:214405 original size:12 final size:12
Alignment explanation
Indices: 214376--214410 Score: 61
Period size: 13 Copynumber: 2.8 Consensus size: 12
214366 GACCTTTTCC
214376 TTTTTCCTTTTT
1 TTTTTCCTTTTT
214388 TCTTTTCCTTTTT
1 T-TTTTCCTTTTT
214401 TTTTTCCTTT
1 TTTTTCCTTT
214411 ATTATTATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 10 0.45
13 12 0.55
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (12 bp):
TTTTTCCTTTTT
Found at i:214788 original size:16 final size:16
Alignment explanation
Indices: 214767--214826 Score: 70
Period size: 16 Copynumber: 3.8 Consensus size: 16
214757 ATCGTTTGAT
214767 TTTAAATTATTTTAAA
1 TTTAAATTATTTTAAA
*
214783 TTTAAATTA-ATTAATA
1 TTTAAATTATTTTAA-A
214799 TTTAAATTATTTCT-AA
1 TTTAAATTATTT-TAAA
*
214815 TTTATATTATTT
1 TTTAAATTATTT
214827 ATTTAATTTA
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
15 4 0.11
16 31 0.82
17 2 0.05
18 1 0.03
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (16 bp):
TTTAAATTATTTTAAA
Found at i:215421 original size:26 final size:23
Alignment explanation
Indices: 215386--215472 Score: 76
Period size: 26 Copynumber: 3.8 Consensus size: 23
215376 ATAGATCATT
215386 TATATATTATTAATAAATTAAATGA
1 TATATATTATTAATAAATT-AAT-A
215411 TAATATATTATTAATTAAA-TAATA
1 T-ATATATTATTAA-TAAATTAATA
*
215435 T-TATATTATTAAAAAATT--TA
1 TATATATTATTAATAAATTAATA
* *
215455 TATTTATTTTTAA-AAATT
1 TATATATTATTAATAAATT
215473 TTTAATAAAA
Statistics
Matches: 55, Mismatches: 3, Indels: 13
0.77 0.04 0.18
Matches are distributed among these distances:
20 8 0.15
21 12 0.22
22 12 0.22
24 2 0.04
25 4 0.07
26 13 0.24
27 4 0.07
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (23 bp):
TATATATTATTAATAAATTAATA
Found at i:215427 original size:22 final size:22
Alignment explanation
Indices: 215401--215446 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
215391 ATTATTAATA
*
215401 AATTAAATGATAATATATTATT
1 AATTAAATAATAATATATTATT
*
215423 AATTAAATAATATTATATTATT
1 AATTAAATAATAATATATTATT
215445 AA
1 AA
215447 AAAATTTATA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (22 bp):
AATTAAATAATAATATATTATT
Found at i:215434 original size:19 final size:18
Alignment explanation
Indices: 215388--215458 Score: 57
Period size: 17 Copynumber: 4.3 Consensus size: 18
215378 AGATCATTTA
215388 TATATTATT-AATAA-AT
1 TATATTATTAAATAATAT
* *
215404 TAAATGA-T-AAT-ATAT
1 TATATTATTAAATAATAT
*
215419 TAT-TAATTAAATAATAT
1 TATATTATTAAATAATAT
*
215436 TATATTATTAAAAAAT-T
1 TATATTATTAAATAATAT
215453 TATATT
1 TATATT
215459 TATTTTTAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
14 3 0.07
15 9 0.20
16 8 0.18
17 14 0.32
18 10 0.23
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.48
Consensus pattern (18 bp):
TATATTATTAAATAATAT
Found at i:215455 original size:17 final size:19
Alignment explanation
Indices: 215419--215458 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
215409 GATAATATAT
*
215419 TATTAATTAAATAATATTA
1 TATTAATTAAAAAATATTA
215438 TATT-ATTAAAAAAT-TTA
1 TATTAATTAAAAAATATTA
215455 TATT
1 TATT
215459 TATTTTTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 7 0.35
18 9 0.45
19 4 0.20
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (19 bp):
TATTAATTAAAAAATATTA
Found at i:215457 original size:22 final size:21
Alignment explanation
Indices: 215405--215470 Score: 62
Period size: 22 Copynumber: 3.1 Consensus size: 21
215395 TTAATAAATT
* * *
215405 AAATGATAATATATTATTAATT
1 AAATAATATTATATTATTAA-A
215427 AAATAATATTATATTATTAAA
1 AAATAATATTATATTATTAAA
* *
215448 AAATTTATATT-TATTTTTAAA
1 AAA-TAATATTATATTATTAAA
215469 AA
1 AA
215471 TTTTTAATAA
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
21 14 0.37
22 24 0.63
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.47
Consensus pattern (21 bp):
AAATAATATTATATTATTAAA
Found at i:215476 original size:22 final size:22
Alignment explanation
Indices: 215414--215470 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
215404 TAAATGATAA
* *
215414 TATATTATTAATTAAA-TAATAT
1 TATATTATTAA-AAAATTTATAT
215436 TATATTATTAAAAAATTTATAT
1 TATATTATTAAAAAATTTATAT
*
215458 T-TATTTTTAAAAA
1 TATATTATTAAAAA
215471 TTTTTAATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 14 0.45
22 17 0.55
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (22 bp):
TATATTATTAAAAAATTTATAT
Found at i:215798 original size:20 final size:20
Alignment explanation
Indices: 215773--215811 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
215763 TAAGATATTT
*
215773 TTAAACCATTAAAAAATTGA
1 TTAAACCAGTAAAAAATTGA
*
215793 TTAAACTAGTAAAAAATTG
1 TTAAACCAGTAAAAAATTG
215812 CTAAAAATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.54, C:0.08, G:0.08, T:0.31
Consensus pattern (20 bp):
TTAAACCAGTAAAAAATTGA
Found at i:217814 original size:12 final size:12
Alignment explanation
Indices: 217782--217806 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
217772 TGTTTGATGT
217782 TATTATAAAAAA
1 TATTATAAAAAA
217794 TATTATAAAAAA
1 TATTATAAAAAA
217806 T
1 T
217807 TATATAAATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (12 bp):
TATTATAAAAAA
Found at i:219319 original size:27 final size:28
Alignment explanation
Indices: 219268--219346 Score: 85
Period size: 27 Copynumber: 2.9 Consensus size: 28
219258 GTATTAAATG
*
219268 TATTTTGAATTATTTATGTAT-TTATATCA
1 TATTTT-AATTATTT-TTTATATTATATCA
*
219297 -A-TTTATATTATTTTTTATATTATATTA
1 TATTTTA-ATTATTTTTTATATTATATCA
219324 TATTTTAATTA-TTTTTATATTAT
1 TATTTTAATTATTTTTTATATTAT
219347 TTTCGTGTTG
Statistics
Matches: 44, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
26 5 0.11
27 29 0.66
28 6 0.14
29 4 0.09
ACGTcount: A:0.32, C:0.01, G:0.03, T:0.65
Consensus pattern (28 bp):
TATTTTAATTATTTTTTATATTATATCA
Found at i:219321 original size:17 final size:16
Alignment explanation
Indices: 219299--219335 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 16
219289 TTATATCAAT
*
219299 TTATATTATTTTTTATA
1 TTATATTATATTTTA-A
219316 TTATATTATATTTTAA
1 TTATATTATATTTTAA
219332 TTAT
1 TTAT
219336 TTTTATATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 5 0.26
17 14 0.74
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (16 bp):
TTATATTATATTTTAA
Found at i:220218 original size:13 final size:13
Alignment explanation
Indices: 220177--220218 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
220167 TTTGTAAAAT
* *
220177 ATATTTAAATATT
1 ATATTTATATATA
*
220190 ATTTTTATAT-TA
1 ATATTTATATATA
220202 ATATTTATATATA
1 ATATTTATATATA
220215 ATAT
1 ATAT
220219 AATTAAATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
12 10 0.42
13 14 0.58
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (13 bp):
ATATTTATATATA
Found at i:220691 original size:18 final size:20
Alignment explanation
Indices: 220656--220698 Score: 63
Period size: 18 Copynumber: 2.2 Consensus size: 20
220646 TTAATTTTTA
220656 TAAATTTAATATAAATTATT
1 TAAATTTAATATAAATTATT
*
220676 TAAATTTAA-AT-TATTATT
1 TAAATTTAATATAAATTATT
220694 TAAAT
1 TAAAT
220699 GATAATAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 11 0.50
19 2 0.09
20 9 0.41
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
TAAATTTAATATAAATTATT
Found at i:220923 original size:5 final size:5
Alignment explanation
Indices: 220913--221095 Score: 71
Period size: 5 Copynumber: 36.8 Consensus size: 5
220903 ATTTGCATAT
* * * *
220913 TTATA TTATA TT-TA -AATA TTTTA TTATA TTATAA TTATA TTTAAA TTATT
1 TTATA TTATA TTATA TTATA TTATA TTATA TTAT-A TTATA -TTATA TTATA
* * *
220963 TTATA TTTATA TTTATA TTA-A TTTTAA TTA-A TTA-A TAATA -CATA
1 TTATA -TTATA -TTATA TTATA TTAT-A TTATA TTATA TTATA TTATA
* * ** * * *
221007 TTATA TAAAA TT-TA AAATA -TATA TTCATA TCATA TTATA TTTTAA TTTTA
1 TTATA TTATA TTATA TTATA TTATA TT-ATA TTATA TTATA TTAT-A TTATA
* *
221057 TTATA TT-TA TTATA TTTATA TAATA ATAT- TTAATA TTAT
1 TTATA TTATA TTATA -TTATA TTATA TTATA TT-ATA TTAT
221096 CATATTTAAA
Statistics
Matches: 133, Mismatches: 28, Indels: 34
0.68 0.14 0.17
Matches are distributed among these distances:
4 26 0.20
5 68 0.51
6 39 0.29
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (5 bp):
TTATA
Found at i:220966 original size:22 final size:22
Alignment explanation
Indices: 220935--220992 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 22
220925 TAAATATTTT
*
220935 ATTATATTATAATTATATTTAA
1 ATTATTTTATAATTATATTTAA
* *
220957 ATTATTTTATATTTATATTTAT
1 ATTATTTTATAATTATATTTAA
*
220979 ATTAATTT-TAATTA
1 ATTATTTTATAATTA
220993 ATTAATAATA
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
21 5 0.16
22 26 0.84
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (22 bp):
ATTATTTTATAATTATATTTAA
Found at i:220980 original size:6 final size:6
Alignment explanation
Indices: 220909--220981 Score: 68
Period size: 6 Copynumber: 12.8 Consensus size: 6
220899 AATAATTTGC
*
220909 ATATTT ATA-TT ATATTT AAATATTT -TA-TT ATA-TT ATAATT ATATTT
1 ATATTT ATATTT ATATTT --ATATTT ATATTT ATATTT ATATTT ATATTT
*
220955 A-AATT AT-TTT ATATTT ATATTT ATATT
1 ATATTT ATATTT ATATTT ATATTT ATATT
220982 AATTTTAATT
Statistics
Matches: 57, Mismatches: 3, Indels: 14
0.77 0.04 0.19
Matches are distributed among these distances:
4 2 0.04
5 22 0.39
6 27 0.47
8 6 0.11
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (6 bp):
ATATTT
Found at i:221014 original size:68 final size:64
Alignment explanation
Indices: 220909--221132 Score: 151
Period size: 68 Copynumber: 3.4 Consensus size: 64
220899 AATAATTTGC
* * * * * *
220909 ATATTTATATT-ATATTTAAATATTTTATTATA-TTATA-ATTATATTTAAATTATTTTATATTT
1 ATATTTATATTAAT-TTTAATTAATTTAATACATTTATATAATATATTTAAATTATTTCATATTT
220971 ATATTTATATTAATTTTAATTAATTAATAATACATATTATATAA-A-ATTTAAAATATATATTCA
1 ATATTTATATTAATTTTAATTAATT--TAATACAT-TTATATAATATATTT-AAAT-TAT-TTCA
*
221034 TA-TC
60 TATTT
* * *
221038 ATATTATATTTTAATTTT-ATTATATTTATTATATTTATATAATAATATTT-AA-TATTATCATA
1 ATATT-TATATTAATTTTAATTA-ATTTAATACATTTATATAAT-ATATTTAAATTATT-TCATA
221100 TTT
62 TTT
*
221103 AAATTTATAATTTATTATTTTAATTAATTT
1 ATATTTAT-A-TTA--ATTTTAATTAATTT
221133 TTATTTTTAT
Statistics
Matches: 128, Mismatches: 13, Indels: 36
0.72 0.07 0.20
Matches are distributed among these distances:
62 20 0.16
63 3 0.02
64 16 0.12
65 17 0.13
66 21 0.16
67 15 0.12
68 32 0.25
69 4 0.03
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.57
Consensus pattern (64 bp):
ATATTTATATTAATTTTAATTAATTTAATACATTTATATAATATATTTAAATTATTTCATATTT
Found at i:221067 original size:9 final size:9
Alignment explanation
Indices: 221039--221075 Score: 51
Period size: 9 Copynumber: 4.3 Consensus size: 9
221029 ATTCATATCA
221039 TATTATATT
1 TATTATATT
*
221048 T-TAAT-TT
1 TATTATATT
221055 TATTATATT
1 TATTATATT
221064 TATTATATT
1 TATTATATT
221073 TAT
1 TAT
221076 ATAATAATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
7 3 0.12
8 6 0.25
9 15 0.62
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (9 bp):
TATTATATT
Found at i:221075 original size:15 final size:15
Alignment explanation
Indices: 221057--221144 Score: 53
Period size: 15 Copynumber: 6.0 Consensus size: 15
221047 TTTAATTTTA
221057 TTATATTTATTATAT
1 TTATATTTATTATAT
* *
221072 TTATA-TAATAATAT
1 TTATATTTATTATAT
*
221086 TTA-ATATTATCATAT
1 TTATAT-TTATTATAT
*
221101 TTAAATTTA-TA-AT
1 TTATATTTATTATAT
221114 TTATTATTTTAATTA-AT
1 TTA-TA-TTT-ATTATAT
*
221131 TTTTATTT-TTATAT
1 TTATATTTATTATAT
221145 ATTAGGTGTT
Statistics
Matches: 58, Mismatches: 7, Indels: 17
0.71 0.09 0.21
Matches are distributed among these distances:
13 9 0.16
14 14 0.24
15 24 0.41
16 5 0.09
17 6 0.10
ACGTcount: A:0.38, C:0.01, G:0.00, T:0.61
Consensus pattern (15 bp):
TTATATTTATTATAT
Done.