Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold381
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1193157
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 7 of 8
Found at i:956056 original size:31 final size:31
Alignment explanation
Indices: 956021--956085 Score: 121
Period size: 31 Copynumber: 2.1 Consensus size: 31
956011 CAAAATGGCA
*
956021 ATCTAAATACATTTGGTGCCTTCATGAAACC
1 ATCTAAATACATTTGGCGCCTTCATGAAACC
956052 ATCTAAATACATTTGGCGCCTTCATGAAACC
1 ATCTAAATACATTTGGCGCCTTCATGAAACC
956083 ATC
1 ATC
956086 GTTATGAGAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.32, C:0.25, G:0.12, T:0.31
Consensus pattern (31 bp):
ATCTAAATACATTTGGCGCCTTCATGAAACC
Found at i:963643 original size:20 final size:21
Alignment explanation
Indices: 963611--963657 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
963601 GGAGGTGCTG
963611 AACATGCTGT-AAATGCATGA
1 AACATGCTGTAAAATGCATGA
963631 AACATAGCT-TAAAATGCATGA
1 AACAT-GCTGTAAAATGCATGA
*
963652 ATCATG
1 AACATG
963658 GGCTGTTAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
20 7 0.29
21 17 0.71
ACGTcount: A:0.43, C:0.15, G:0.17, T:0.26
Consensus pattern (21 bp):
AACATGCTGTAAAATGCATGA
Found at i:964626 original size:52 final size:52
Alignment explanation
Indices: 964478--964606 Score: 240
Period size: 52 Copynumber: 2.5 Consensus size: 52
964468 CGAAATATGA
*
964478 AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
1 AAATTTGCTTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
*
964530 AAATTTGCTTGTATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
1 AAATTTGCTTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
964582 AAATTTGCTTGCATGTATCGATACA
1 AAATTTGCTTGCATGTATCGATACA
964607 AAGATTAGTG
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 74 1.00
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.38
Consensus pattern (52 bp):
AAATTTGCTTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
Found at i:964633 original size:13 final size:13
Alignment explanation
Indices: 964615--964639 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
964605 CAAAGATTAG
964615 TGTATCGATACAA
1 TGTATCGATACAA
964628 TGTATCGATACA
1 TGTATCGATACA
964640 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:964713 original size:19 final size:18
Alignment explanation
Indices: 964689--964786 Score: 90
Period size: 19 Copynumber: 5.8 Consensus size: 18
964679 CATAACGATT
964689 TGTATCGATACAAAGCTTA
1 TGTATCGATACAAA-CTTA
964708 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
964721 TGTATCGATACAACACTTA
1 TGTATCGATACAA-ACTTA
964740 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
964753 TGTATCGATACAACACTTTA
1 TGTATCGATACAA-AC-TTA
964773 TGTATCGATACAAA
1 TGTATCGATACAAA
964787 TCGTTGAAAT
Statistics
Matches: 66, Mismatches: 0, Indels: 26
0.72 0.00 0.28
Matches are distributed among these distances:
13 22 0.33
14 2 0.03
16 3 0.05
17 1 0.02
18 1 0.02
19 24 0.36
20 13 0.20
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.34
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:964724 original size:32 final size:33
Alignment explanation
Indices: 964688--964784 Score: 164
Period size: 32 Copynumber: 3.0 Consensus size: 33
964678 TCATAACGAT
964688 TTGTATCGATACAA-AGCTTATGTATCGATACA
1 TTGTATCGATACAACAGCTTATGTATCGATACA
964720 TTGTATCGATACAACA-CTTATGTATCGATACA
1 TTGTATCGATACAACAGCTTATGTATCGATACA
964752 TTGTATCGATACAACA-CTTTATGTATCGATACA
1 TTGTATCGATACAACAGC-TTATGTATCGATACA
964785 AATCGTTGAA
Statistics
Matches: 63, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
32 47 0.75
33 16 0.25
ACGTcount: A:0.34, C:0.18, G:0.13, T:0.35
Consensus pattern (33 bp):
TTGTATCGATACAACAGCTTATGTATCGATACA
Found at i:964726 original size:13 final size:13
Alignment explanation
Indices: 964708--964764 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
964698 ACAAAGCTTA
964708 TGTATCGATACAT
1 TGTATCGATACAT
964721 TGTATCGATACAACACTT
1 TGTATCGAT---ACA--T
964739 ATGTATCGATACAT
1 -TGTATCGATACAT
964753 TGTATCGATACA
1 TGTATCGATACA
964765 ACACTTTATG
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 21 0.55
14 1 0.03
16 6 0.16
18 1 0.03
19 9 0.24
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:970516 original size:20 final size:20
Alignment explanation
Indices: 970463--970518 Score: 78
Period size: 20 Copynumber: 2.8 Consensus size: 20
970453 ACATCTTTTT
*
970463 CATGTATCGATACATTGCAA
1 CATGTATCGATACTTTGCAA
970483 CATGTATCGATACTTTG-AA
1 CATGTATCGATACTTTGCAA
*
970502 CTGTGTATCGATACTTT
1 C-ATGTATCGATACTTT
970519 TAAGGGTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
19 3 0.09
20 30 0.91
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.38
Consensus pattern (20 bp):
CATGTATCGATACTTTGCAA
Found at i:972959 original size:13 final size:13
Alignment explanation
Indices: 972941--972978 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
972931 ATAATCCCCC
972941 TGTATCGATACAG
1 TGTATCGATACAG
*
972954 TGTATCGATACAT
1 TGTATCGATACAG
972967 TGTATCGATACA
1 TGTATCGATACA
972979 AAGAAAAATG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:975080 original size:15 final size:15
Alignment explanation
Indices: 975060--975090 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
975050 ATTTCGTTTG
*
975060 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
975075 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
975090 G
1 G
975091 GATATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:979173 original size:13 final size:13
Alignment explanation
Indices: 979155--979180 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
979145 ATATTTTTTG
979155 TGTATCGATACAT
1 TGTATCGATACAT
979168 TGTATCGATACAT
1 TGTATCGATACAT
979181 ATTTTTTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:979191 original size:19 final size:19
Alignment explanation
Indices: 979134--979198 Score: 70
Period size: 19 Copynumber: 3.6 Consensus size: 19
979124 TACAAGCCAA
979134 TGTATCGATACATATTTTTT
1 TGTATCGATACATA-TTTTT
979154 GTGTATCGATAC--A----T
1 -TGTATCGATACATATTTTT
979168 TGTATCGATACATATTTTT
1 TGTATCGATACATATTTTT
979187 TGTATCGATACA
1 TGTATCGATACA
979199 AGTTTGGCTA
Statistics
Matches: 38, Mismatches: 0, Indels: 14
0.73 0.00 0.27
Matches are distributed among these distances:
13 11 0.29
14 1 0.03
15 1 0.03
19 14 0.37
21 11 0.29
ACGTcount: A:0.28, C:0.12, G:0.14, T:0.46
Consensus pattern (19 bp):
TGTATCGATACATATTTTT
Found at i:979196 original size:32 final size:34
Alignment explanation
Indices: 979134--979198 Score: 116
Period size: 34 Copynumber: 2.0 Consensus size: 34
979124 TACAAGCCAA
979134 TGTATCGATACATATTTTTTGTGTATCGATACAT
1 TGTATCGATACATATTTTTTGTGTATCGATACAT
979168 TGTATCGATACATA-TTTTT-TGTATCGATACA
1 TGTATCGATACATATTTTTTGTGTATCGATACA
979199 AGTTTGGCTA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
32 12 0.39
33 5 0.16
34 14 0.45
ACGTcount: A:0.28, C:0.12, G:0.14, T:0.46
Consensus pattern (34 bp):
TGTATCGATACATATTTTTTGTGTATCGATACAT
Found at i:979776 original size:33 final size:33
Alignment explanation
Indices: 979733--979797 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 33
979723 TTTGAAGCAA
* *
979733 TGTATCGATACAATTTATCATGTATCGATACAT
1 TGTATCGATACAATGTACCATGTATCGATACAT
* *
979766 TGTATTGATACAATGTGCCATGTATCGATACA
1 TGTATCGATACAATGTACCATGTATCGATACA
979798 AACAGTGGTA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.37
Consensus pattern (33 bp):
TGTATCGATACAATGTACCATGTATCGATACAT
Found at i:982644 original size:60 final size:61
Alignment explanation
Indices: 982535--982657 Score: 169
Period size: 60 Copynumber: 2.0 Consensus size: 61
982525 TTGGACAATC
* * *
982535 AAGAGGAATGTGGCCCATTTTACAGCAACACTTAAAAAACTTATTTTTTGATCTTTAAACT
1 AAGAAGAATATGGCCCATTTAACAGCAACACTTAAAAAACTTATTTTTTGATCTTTAAACT
* * *
982596 AAGAAGAATATGGCCCA-TTAATAGCAATACTTAAAAAGCTT-TTCTTTTGATCTTTAAACT
1 AAGAAGAATATGGCCCATTTAACAGCAACACTTAAAAAACTTATT-TTTTGATCTTTAAACT
982656 AA
1 AA
982658 TGTTCCTAAT
Statistics
Matches: 55, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
59 2 0.04
60 38 0.69
61 15 0.27
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.34
Consensus pattern (61 bp):
AAGAAGAATATGGCCCATTTAACAGCAACACTTAAAAAACTTATTTTTTGATCTTTAAACT
Found at i:984443 original size:32 final size:33
Alignment explanation
Indices: 984402--984464 Score: 92
Period size: 32 Copynumber: 1.9 Consensus size: 33
984392 AGCCAAACTT
* **
984402 GTATCGATACACCAAGTA-TGTATCGATACAAC
1 GTATCGATACACAAAAAATTGTATCGATACAAC
984434 GTATCGATACACAAAAAATTGTATCGATACA
1 GTATCGATACACAAAAAATTGTATCGATACA
984465 TTGGCTTGTA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 15 0.56
33 12 0.44
ACGTcount: A:0.41, C:0.19, G:0.14, T:0.25
Consensus pattern (33 bp):
GTATCGATACACAAAAAATTGTATCGATACAAC
Found at i:984965 original size:34 final size:35
Alignment explanation
Indices: 984902--984968 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
984892 CTAAGTGATT
984902 GAGAGGTTCTATCTTAGCCTTTGAAAAAGATAGAGA
1 GAGAGGTTCTATCTTAGCCTTTG-AAAAGATAGAGA
984938 GAGAGGTTTCTATCTTAGCC-TTG-AAAGATAG
1 GAGAGG-TTCTATCTTAGCCTTTGAAAAGATAG
984969 TGTTGTAAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 8 0.27
36 9 0.30
37 13 0.43
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (35 bp):
GAGAGGTTCTATCTTAGCCTTTGAAAAGATAGAGA
Found at i:986496 original size:79 final size:80
Alignment explanation
Indices: 986391--986590 Score: 239
Period size: 79 Copynumber: 2.5 Consensus size: 80
986381 TTTAATATTT
* * * *
986391 TAGAGATAAAAACGAGGTTGGA-TATCCCCTCAAAAATAACGGA-GTTGGAGTATCCCCAATTGT
1 TAGAAATAAAATCGGGGTTGGAGTATCCCCTCAAAAATAACGAAGGTTGGAGTATCCCCAATTGT
*
986454 GAAAAATCGGTGTT-
66 GAAAAATCGATGTTA
* * * *
986468 TTGAAAATAAAA-CTGGGGTTGGAGTATCCCCTAAAAAATAAC-AAGGTTGGAGTATCTCCGATT
1 TAG-AAATAAAATC-GGGGTTGGAGTATCCCCTCAAAAATAACGAAGGTTGGAGTATCCCCAATT
986531 GTGAAAAATCGATGTTA
64 GTGAAAAATCGATGTTA
** *
986548 TAGAAATAAAATCGGGGTTGGAGTATCTTCTCGAAAATAACGA
1 TAGAAATAAAATCGGGGTTGGAGTATCCCCTCAAAAATAACGA
986591 GTGTTTTACA
Statistics
Matches: 103, Mismatches: 13, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
77 3 0.03
78 16 0.16
79 80 0.78
80 4 0.04
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.26
Consensus pattern (80 bp):
TAGAAATAAAATCGGGGTTGGAGTATCCCCTCAAAAATAACGAAGGTTGGAGTATCCCCAATTGT
GAAAAATCGATGTTA
Found at i:986616 original size:127 final size:127
Alignment explanation
Indices: 986463--986715 Score: 327
Period size: 127 Copynumber: 2.0 Consensus size: 127
986453 TGAAAAATCG
986463 GTGTTTTGAAAATAAAACTGGGGTTGGAGTATCCCCT-AAAAAATAACAAGG-TTGGAGTATCTC
1 GTGTTTTGAAAATAAAACTGGGGTTGGAGTAT-CCCTGAAAAAATAAC-AGGTTTGGAGTATC-C
* * * * **
986526 CGATTG-TGAAAAATCGATGTTATAGAAATAAAATCGGGGTTGGAGTATCTTCTCGAAAATAACG
63 CCAATGATGAAAAATCGATGTTATAG-AATAAAACCGCGGTTGGAGTATCCCCTCGAAAATAACG
986590 A
127 A
* *
986591 GTGTTTT-ACAATAAAA-TCGGGGTTGGAGTATCCCTGCAAAAATAACAGGTTTGGAGTATCCCC
1 GTGTTTTGAAAATAAAACT-GGGGTTGGAGTATCCCTGAAAAAATAACAGGTTTGGAGTATCCCC
* * *
986654 AATGATGAAAAATCGGTGTTTTAGAATAAAACCGCGGTTGGAGTATCCCCTTGAAAATAACG
65 AATGATGAAAAATCGATGTTATAGAATAAAACCGCGGTTGGAGTATCCCCTCGAAAATAACG
986716 GGGTTGGAGT
Statistics
Matches: 110, Mismatches: 11, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
126 46 0.42
127 57 0.52
128 7 0.06
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.28
Consensus pattern (127 bp):
GTGTTTTGAAAATAAAACTGGGGTTGGAGTATCCCTGAAAAAATAACAGGTTTGGAGTATCCCCA
ATGATGAAAAATCGATGTTATAGAATAAAACCGCGGTTGGAGTATCCCCTCGAAAATAACGA
Found at i:986682 original size:78 final size:77
Alignment explanation
Indices: 986591--987013 Score: 447
Period size: 79 Copynumber: 5.4 Consensus size: 77
986581 AAAATAACGA
* * *
986591 GTGTTTTACAATAAAATCGGGGTTGGAGTATCCCTGCAAAAATAACAGGTTTGGAGTATCCCCAA
1 GTGTTTTAGAATAAAATCGAGGTTGGAGTATCCCT-CAAAAATAACAGGGTTGGAGTATCCCCAA
* *
986656 TGATGAAAAATCG
65 TGGTGGAAAATCG
* * ** * *
986669 GTGTTTTAGAATAAAACCGCGGTTGGAGTATCCCCTTGAAAATAACGGGGTTGGAGTATCCCCGA
1 GTGTTTTAGAATAAAATCGAGGTTGGAGTAT-CCCTCAAAAATAACAGGGTTGGAGTATCCCCAA
*
986734 TGATGGAAAATCG
65 TGGTGGAAAATCG
* * * *
986747 GTGTTTTAGAATAAAAATCGAGGTTGGAGTATCTTCTCAGAAATAACAGGGTTAGAGTATCCCCG
1 GTGTTTTAGAAT-AAAATCGAGGTTGGAGTATC-CCTCAAAAATAACAGGGTTGGAGTATCCCCA
**
986812 ATGGTAAAAAATCG
64 ATGGTGGAAAATCG
* * * *
986826 ATGTTTTAGAAATAAAATCGAGGTTGGAGTATCCTCTCGAAAATAACGGGGTTGGAGTATCCTCA
1 GTGTTTTAG-AATAAAATCGAGGTTGGAGTATCC-CTCAAAAATAACAGGGTTGGAGTATCCCCA
*
986891 ATGGTGGAAAATTG
64 ATGGTGGAAAATCG
* * * ** * **
986905 ATGTTTTAAAAT-AAA-CCAGGGTTGGAGTATCCCCTCGGAAATAA-TGGGTCAGAGTATCCCCA
1 GTGTTTTAGAATAAAATCGA-GGTTGGAGTAT-CCCTCAAAAATAACAGGGTTGGAGTATCCCCA
*
986967 ATGGTGGAAAATAG
64 ATGGTGGAAAATCG
*
986981 GTGTTTTAGAAATAAAATCGAGGTTGAAGTATC
1 GTGTTTTAG-AATAAAATCGAGGTTGGAGTATC
987014 TCTGAGATAA
Statistics
Matches: 292, Mismatches: 43, Indels: 21
0.82 0.12 0.06
Matches are distributed among these distances:
76 36 0.12
77 28 0.10
78 95 0.33
79 130 0.45
80 3 0.01
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.27
Consensus pattern (77 bp):
GTGTTTTAGAATAAAATCGAGGTTGGAGTATCCCTCAAAAATAACAGGGTTGGAGTATCCCCAAT
GGTGGAAAATCG
Found at i:986766 original size:205 final size:205
Alignment explanation
Indices: 986396--986793 Score: 549
Period size: 205 Copynumber: 1.9 Consensus size: 205
986386 TATTTTAGAG
986396 ATAAAAACGAGGTTGGATATCCCCTCAAAAATAACGGAGTTGGAGTATCCCCAATTGTGAAAAAT
1 ATAAAAACGAGGTTGGATATCCCCTCAAAAATAACGGAGTTGGAGTATCCCCAATTGTGAAAAAT
* * *
986461 CGGTGTTTTGAAAATAAAACTGGGGTTGGAGTATCCCCTAAAAAATAACAAGGTTGGAGTATCTC
66 CGGTGTTTTGAAAATAAAACCGCGGTTGGAGTATCCCCTAAAAAATAACAAGGTTGGAGTATCCC
*
986526 CGATTGTGAAAAATCGATGTTATAGAAATAAAATCGGGGTTGGAGTATCTTCTC-GAAAATAACG
131 CGATTGTGAAAAATCGATGTTATAGAAATAAAATCGAGGTTGGAGTATCTTCTCAG-AAATAACG
986590 AGTGTTTTACA
195 AGTGTTTTACA
* * *
986601 ATAAAATCGGGGTTGGAGTAT-CCCTGCAAAAATAACAGG-TTTGGAGTATCCCCAA-TGATGAA
1 ATAAAAACGAGGTTGGA-TATCCCCT-CAAAAATAAC-GGAGTTGGAGTATCCCCAATTG-TGAA
* ** **
986663 AAATCGGTGTTTT-AGAATAAAACCGCGGTTGGAGTATCCCCTTGAAAATAACGGGGTTGGAGTA
62 AAATCGGTGTTTTGAAAATAAAACCGCGGTTGGAGTATCCCCTAAAAAATAACAAGGTTGGAGTA
* * *
986727 TCCCCGA-TGATGGAAAATCGGTGTTTTAG-AATAAAAATCGAGGTTGGAGTATCTTCTCAGAAA
127 TCCCCGATTG-TGAAAAATCGATGTTATAGAAAT-AAAATCGAGGTTGGAGTATCTTCTCAGAAA
986790 TAAC
190 TAAC
986794 AGGGTTAGAG
Statistics
Matches: 171, Mismatches: 15, Indels: 14
0.86 0.08 0.07
Matches are distributed among these distances:
204 5 0.03
205 118 0.69
206 46 0.27
207 2 0.01
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (205 bp):
ATAAAAACGAGGTTGGATATCCCCTCAAAAATAACGGAGTTGGAGTATCCCCAATTGTGAAAAAT
CGGTGTTTTGAAAATAAAACCGCGGTTGGAGTATCCCCTAAAAAATAACAAGGTTGGAGTATCCC
CGATTGTGAAAAATCGATGTTATAGAAATAAAATCGAGGTTGGAGTATCTTCTCAGAAATAACGA
GTGTTTTACA
Found at i:986910 original size:158 final size:156
Alignment explanation
Indices: 986592--987013 Score: 521
Period size: 158 Copynumber: 2.7 Consensus size: 156
986582 AAATAACGAG
* * * *
986592 TGTTTTACAAT-AAAATCGGGGTTGGAGTATCCCTGCAAAAATAACAGGTTTGGAGTATCCCCAA
1 TGTTTTA-AATAAAAATCGAGGTTGGAGTATCCCT-CAGAAATAACAGGGTTAGAGTATCCCCAA
* * * *
986656 TGATGAAAAATCGGTGTTTTAG-AATAAAACCGCGGTTGGAGTATCCCCTTGAAAATAACGGGGT
64 TGGTGAAAAATCGGTGTTTTAGAAATAAAATCGAGGTTGGAGTATCCCCTCGAAAATAACGGGGT
* *
986720 TGGAGTATCCCCGATGATGGAAAATCGG
129 TGGAGTATCCCCAATGATGGAAAATCGA
* *
986748 TGTTTTAGAATAAAAATCGAGGTTGGAGTATCTTCTCAGAAATAACAGGGTTAGAGTATCCCCGA
1 TGTTTTA-AATAAAAATCGAGGTTGGAGTATC-CCTCAGAAATAACAGGGTTAGAGTATCCCCAA
* * *
986813 TGGTAAAAAATCGATGTTTTAGAAATAAAATCGAGGTTGGAGTATCCTCTCGAAAATAACGGGGT
64 TGGTGAAAAATCGGTGTTTTAGAAATAAAATCGAGGTTGGAGTATCCCCTCGAAAATAACGGGGT
* * *
986878 TGGAGTATCCTCAATGGTGGAAAATTGA
129 TGGAGTATCCCCAATGATGGAAAATCGA
* * * * *
986906 TGTTTTAAA-ATAAA-CCAGGGTTGGAGTATCCCCTCGGAAATAA-TGGGTCAGAGTATCCCCAA
1 TGTTTTAAATAAAAATCGA-GGTTGGAGTAT-CCCTCAGAAATAACAGGGTTAGAGTATCCCCAA
* * *
986968 TGGTGGAAAATAGGTGTTTTAGAAATAAAATCGAGGTTGAAGTATC
64 TGGTGAAAAATCGGTGTTTTAGAAATAAAATCGAGGTTGGAGTATC
987014 TCTGAGATAA
Statistics
Matches: 230, Mismatches: 31, Indels: 11
0.85 0.11 0.04
Matches are distributed among these distances:
155 59 0.26
156 35 0.15
157 66 0.29
158 70 0.30
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.27
Consensus pattern (156 bp):
TGTTTTAAATAAAAATCGAGGTTGGAGTATCCCTCAGAAATAACAGGGTTAGAGTATCCCCAATG
GTGAAAAATCGGTGTTTTAGAAATAAAATCGAGGTTGGAGTATCCCCTCGAAAATAACGGGGTTG
GAGTATCCCCAATGATGGAAAATCGA
Found at i:994552 original size:17 final size:18
Alignment explanation
Indices: 994514--994553 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
994504 TCGTTATCCC
* *
994514 TAAATTAATTTTTTTAAT
1 TAAATTAATTTTTTAAAA
994532 TAAATT-ATTTTTTAAAA
1 TAAATTAATTTTTTAAAA
994549 TAAAT
1 TAAAT
994554 ATAAAAATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 14 0.70
18 6 0.30
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (18 bp):
TAAATTAATTTTTTAAAA
Found at i:994602 original size:41 final size:39
Alignment explanation
Indices: 994523--994602 Score: 99
Period size: 40 Copynumber: 2.0 Consensus size: 39
994513 CTAAATTAAT
* *
994523 TTTTTTAATTAAATTATTTTTTAAAATAAATATAAAAATA
1 TTTTTTAA-TAAATTATTGTTTAAAATAAATAGAAAAATA
994563 TTTTTTAA-AAATTATTGTTTACTAAATAAATAGATAAAAT
1 TTTTTTAATAAATTATTGTTTA--AAATAAATAGA-AAAAT
994603 TTAAAAAAAG
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
38 12 0.34
40 18 0.51
41 5 0.14
ACGTcount: A:0.49, C:0.01, G:0.03, T:0.47
Consensus pattern (39 bp):
TTTTTTAATAAATTATTGTTTAAAATAAATAGAAAAATA
Found at i:997911 original size:3 final size:3
Alignment explanation
Indices: 997903--997939 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
997893 TTTAATTTAA
997903 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
997940 TTTTTATAAC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:998302 original size:13 final size:13
Alignment explanation
Indices: 998286--998310 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
998276 AAAATAGGAG
998286 TTTTAAATTTTAT
1 TTTTAAATTTTAT
998299 TTTTAAATTTTA
1 TTTTAAATTTTA
998311 ATAATAAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (13 bp):
TTTTAAATTTTAT
Found at i:998433 original size:6 final size:7
Alignment explanation
Indices: 998416--998440 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
998406 ATTTTTATAT
998416 AAAAAAG
1 AAAAAAG
998423 AAAAAAG
1 AAAAAAG
998430 AAAAAAG
1 AAAAAAG
998437 AAAA
1 AAAA
998441 TTTCAATTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:998648 original size:2 final size:2
Alignment explanation
Indices: 998641--998674 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
998631 ACTAACCATT
*
998641 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
998675 CTAAAAATGT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:998971 original size:21 final size:21
Alignment explanation
Indices: 998947--999003 Score: 96
Period size: 21 Copynumber: 2.7 Consensus size: 21
998937 AATTTATCCA
998947 AATGTATCGATACATTTGTAG
1 AATGTATCGATACATTTGTAG
* *
998968 AATGTATCAATACATTTGTGG
1 AATGTATCGATACATTTGTAG
998989 AATGTATCGATACAT
1 AATGTATCGATACAT
999004 CCTACAAATG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.35, C:0.11, G:0.18, T:0.37
Consensus pattern (21 bp):
AATGTATCGATACATTTGTAG
Found at i:999152 original size:13 final size:13
Alignment explanation
Indices: 999134--999159 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
999124 CATTTTTCTG
999134 TGTATCGATACAT
1 TGTATCGATACAT
999147 TGTATCGATACAT
1 TGTATCGATACAT
999160 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:999156 original size:33 final size:33
Alignment explanation
Indices: 999114--999180 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
999104 GCCAAGGAAA
***
999114 TGTATCGATACATTTTTCTGTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
*
999147 TGTATCGATACATGGATCTTTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
999180 T
1 T
999181 TGGAAATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.25, C:0.15, G:0.16, T:0.43
Consensus pattern (33 bp):
TGTATCGATACATGGATCTGTGTATCGATACAT
Found at i:1001728 original size:52 final size:50
Alignment explanation
Indices: 1001650--1001823 Score: 172
Period size: 52 Copynumber: 3.4 Consensus size: 50
1001640 CCCGTTAATC
* *
1001650 ATCGGGGATACTCCAACCCCAGTTTTATTGCTAAAACACTAATTTTTCCACA
1 ATCGGGGATACTCCAA-CCCGGTTTTATT-CTAAAACACCAATTTTTCCACA
* * **
1001702 ATCGGGGATACTCCAACCCTGGTTTTATTTTCAAAACGCCAA-TTTTCCTTTA
1 ATCGGGGATACTCCAACCC-GGTTTTATTCT-AAAACACCAATTTTTCC-ACA
* * *
1001754 ATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTT-CACA
1 ATCGGGGATACTCCAAC-CCGGTTTTA-TT-CTAAAACACCAATTTTTCCACA
*
1001806 ATCGAGGATACTCCAACC
1 ATCGGGGATACTCCAACC
1001824 TCGTTATTTC
Statistics
Matches: 101, Mismatches: 14, Indels: 15
0.78 0.11 0.12
Matches are distributed among these distances:
51 11 0.11
52 73 0.72
53 13 0.13
54 4 0.04
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.32
Consensus pattern (50 bp):
ATCGGGGATACTCCAACCCGGTTTTATTCTAAAACACCAATTTTTCCACA
Found at i:1001838 original size:184 final size:184
Alignment explanation
Indices: 1001512--1001853 Score: 519
Period size: 184 Copynumber: 1.9 Consensus size: 184
1001502 TTCTCAATTC
* *
1001512 TCCACAATCGGGGATATTCCAACTCCGATTTTATTTTCAAAACACTAATTTTCTATAATCAGGGA
1 TCCACAATCGGGGATACTCCAACTCCGATTTTATTTTCAAAACACCAATTTTCTATAATCAGGGA
** * *
1001577 TACTTTAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGGGGATACTCTAACCC
66 TACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAACCC
1001642 CGTTAATCATCGGGGATACTCCAACCCCAGTTTTATTGCTAAAACACTAATTTT
131 CGTTAATCATCGGGGATACTCCAACCCCAGTTTTATTGCTAAAACACTAATTTT
* * * *
1001696 TCCACAATCGGGGATACTCCAAC-CCTGGTTTTATTTTCAAAACGCCAATTTTCCTTTAATCGGG
1 TCCACAATCGGGGATACTCCAACTCC-GATTTTATTTTCAAAACACCAATTTT-CTATAATCAGG
*
1001760 GATACTCCAACTCCGATTTTATTTCC-AAAAATACCAATTT-TTCACAATCGAGGATACTCCAAC
64 GATACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAAC
* *
1001823 CTCGTTATTTCATCGGGGATACTCCAACCCC
129 CCCGTTA-ATCATCGGGGATACTCCAACCCC
1001854 GTTACTTCCG
Statistics
Matches: 142, Mismatches: 13, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
183 29 0.20
184 80 0.56
185 33 0.23
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.32
Consensus pattern (184 bp):
TCCACAATCGGGGATACTCCAACTCCGATTTTATTTTCAAAACACCAATTTTCTATAATCAGGGA
TACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAACCC
CGTTAATCATCGGGGATACTCCAACCCCAGTTTTATTGCTAAAACACTAATTTT
Found at i:1001842 original size:28 final size:28
Alignment explanation
Indices: 1001806--1001882 Score: 100
Period size: 28 Copynumber: 2.8 Consensus size: 28
1001796 ATTTTTCACA
* * *
1001806 ATCGAGGATACTCCAACCTCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
1001834 ATCGGGGATACTCCAACCCCGTTACTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
***
1001862 CGAGGGGATACTCCAACCCCG
1 ATCGGGGATACTCCAACCCCG
1001883 GCTTTATTCC
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.23, C:0.34, G:0.19, T:0.23
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTACTTC
Found at i:1001949 original size:107 final size:107
Alignment explanation
Indices: 1001757--1001956 Score: 251
Period size: 107 Copynumber: 1.9 Consensus size: 107
1001747 TCCTTTAATC
* * *
1001757 GGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTTCACAATCGAGGATACTCCAA
1 GGGGATACTCCAACCCCGACTTTATTTCCAAAAATACCAATTTCTCACAATCGAGGATACTCCAA
*
1001822 CCTCGTTATTTCATCGGGGATACTCCAACCCCGTTACTTCCGA
66 CCCCGTTATTT-ATCGGGGATACTCCAACCCCGTTACTTCCGA
* * *** * * *
1001865 GGGGATACTCCAACCCCGGCTTTA-TTCCCAAAATATTGATTTCTCATAATTGGGGATACTCCAA
1 GGGGATACTCCAACCCCGACTTTATTTCCAAAAATACCAATTTCTCACAATCGAGGATACTCCAA
1001929 CCCCGTTATTT-TCGAAGGGATACTCCAA
66 CCCCGTTATTTATCG--GGGATACTCCAA
1001957 TCTCGATTTT
Statistics
Matches: 78, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
105 3 0.04
107 54 0.69
108 21 0.27
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.29
Consensus pattern (107 bp):
GGGGATACTCCAACCCCGACTTTATTTCCAAAAATACCAATTTCTCACAATCGAGGATACTCCAA
CCCCGTTATTTATCGGGGATACTCCAACCCCGTTACTTCCGA
Found at i:1001985 original size:79 final size:79
Alignment explanation
Indices: 1001836--1002038 Score: 221
Period size: 79 Copynumber: 2.6 Consensus size: 79
1001826 GTTATTTCAT
* * * *
1001836 CGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGGCTTTATTCCCAAAATAT
1 CGGGGATACTCCAACCCCGTTATTTTCGAAGGGATACTCCAACCCCGACTTTATTCCCAAAATAT
* * *
1001901 TGATTTCTCATAAT
66 CGATTTCTCACAAC
* * * * * ** *
1001915 TGGGGATACTCCAACCCCGTTATTTTCGAAGGGATACTCCAATCTCGATTTTTTTTTC-TAATCA
1 CGGGGATACTCCAACCCCGTTATTTTCGAAGGGATACTCCAACCCCGACTTTATTCCCAAAAT-A
1001979 TCGATTTCTCACAAC
65 TCGATTTCTCACAAC
* *
1001994 CGGGGATACTCCAGCCCCGTTATTTTC-AAGGGAACACTCCAACCC
1 CGGGGATACTCCAACCCCGTTATTTTCGAAGGG-ATACTCCAACCC
1002039 TGTTATTATC
Statistics
Matches: 102, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
78 8 0.08
79 94 0.92
ACGTcount: A:0.25, C:0.30, G:0.16, T:0.30
Consensus pattern (79 bp):
CGGGGATACTCCAACCCCGTTATTTTCGAAGGGATACTCCAACCCCGACTTTATTCCCAAAATAT
CGATTTCTCACAAC
Found at i:1004977 original size:2 final size:2
Alignment explanation
Indices: 1004970--1004994 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
1004960 ATATAAACTC
1004970 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
1004995 AGATATTAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1010756 original size:28 final size:30
Alignment explanation
Indices: 1010724--1010791 Score: 81
Period size: 28 Copynumber: 2.4 Consensus size: 30
1010714 TAAAAAATCA
**
1010724 AATTTATATATTT-TATTATTTAAAATTTT
1 AATTTATATATTTATAAGATTTAAAATTTT
*
1010753 -ATTTATA-ATTTATAAGATTTAAACTTTT
1 AATTTATATATTTATAAGATTTAAAATTTT
1010781 AATTT-TATATT
1 AATTTATATATT
1010792 AAAAATCACA
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
27 4 0.12
28 22 0.67
29 7 0.21
ACGTcount: A:0.38, C:0.01, G:0.01, T:0.59
Consensus pattern (30 bp):
AATTTATATATTTATAAGATTTAAAATTTT
Found at i:1015311 original size:19 final size:19
Alignment explanation
Indices: 1015282--1015327 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
1015272 TAATTTAATA
1015282 TATTT-AATATTAAAATCCT
1 TATTTAAATATTAAAAT-CT
*
1015301 T-TTTAAATATTTAAATCT
1 TATTTAAATATTAAAATCT
1015319 TATTTAAAT
1 TATTTAAAT
1015328 GAACTAGTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
18 6 0.25
19 18 0.75
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.52
Consensus pattern (19 bp):
TATTTAAATATTAAAATCT
Found at i:1022989 original size:13 final size:13
Alignment explanation
Indices: 1022971--1022996 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1022961 ACATTTTGGG
1022971 ATGTATCGATACA
1 ATGTATCGATACA
1022984 ATGTATCGATACA
1 ATGTATCGATACA
1022997 TATTGTGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1022992 original size:33 final size:32
Alignment explanation
Indices: 1022950--1023016 Score: 107
Period size: 33 Copynumber: 2.1 Consensus size: 32
1022940 GTTACAAGCT
*
1022950 AATGTATCGATACATTTTGGGATGTATCGATAC
1 AATGTATCGATACATATTGGG-TGTATCGATAC
*
1022983 AATGTATCGATACATATTGTGTGTATCGATAC
1 AATGTATCGATACATATTGGGTGTATCGATAC
1023015 AA
1 AA
1023017 ACAGTTAAGG
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 13 0.41
33 19 0.59
ACGTcount: A:0.33, C:0.12, G:0.19, T:0.36
Consensus pattern (32 bp):
AATGTATCGATACATATTGGGTGTATCGATAC
Found at i:1023115 original size:13 final size:13
Alignment explanation
Indices: 1023097--1023121 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1023087 ACATTTGGTC
1023097 ATGTATCGATACA
1 ATGTATCGATACA
1023110 ATGTATCGATAC
1 ATGTATCGATAC
1023122 TGTGCATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1023154 original size:20 final size:19
Alignment explanation
Indices: 1023131--1023170 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
1023121 CTGTGCATTA
1023131 TGTATCGATACATTTGAAGG
1 TGTATCGATAC-TTTGAAGG
*
1023151 TGTATCGATACTTTTAAGG
1 TGTATCGATACTTTGAAGG
1023170 T
1 T
1023171 TTTGACCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.28, C:0.10, G:0.23, T:0.40
Consensus pattern (19 bp):
TGTATCGATACTTTGAAGG
Found at i:1025602 original size:13 final size:13
Alignment explanation
Indices: 1025584--1025608 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1025574 ATAAACCCTT
1025584 TGTATCGATACAC
1 TGTATCGATACAC
1025597 TGTATCGATACA
1 TGTATCGATACA
1025609 GAGTATGCTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAC
Found at i:1031796 original size:13 final size:13
Alignment explanation
Indices: 1031778--1031803 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1031768 ACTTTTTGGG
1031778 ATGTATCGATACA
1 ATGTATCGATACA
1031791 ATGTATCGATACA
1 ATGTATCGATACA
1031804 TAGTGTGTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1033352 original size:24 final size:23
Alignment explanation
Indices: 1033308--1033361 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 23
1033298 TATATTGAAA
*
1033308 TCAAATAAATCAAGTTGCATCATT
1 TCAAA-AAAACAAGTTGCATCATT
1033332 CTCAAAAAAACAAGCTT-CATCATT
1 -TCAAAAAAACAAG-TTGCATCATT
1033356 TCAAAA
1 TCAAAA
1033362 CTGAATGAGA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
23 6 0.22
24 14 0.52
25 7 0.26
ACGTcount: A:0.46, C:0.20, G:0.06, T:0.28
Consensus pattern (23 bp):
TCAAAAAAACAAGTTGCATCATT
Found at i:1038250 original size:2 final size:2
Alignment explanation
Indices: 1038243--1038282 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
1038233 CGTTGCTCAC
1038243 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1038283 CATCGATCTC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1040780 original size:26 final size:27
Alignment explanation
Indices: 1040715--1040780 Score: 64
Period size: 27 Copynumber: 2.4 Consensus size: 27
1040705 ATTTTATATA
*
1040715 TTATAGTTATATTTAAAATATTATATAAT
1 TTATA-TTAT-TTTAAAATAATATATAAT
* *
1040744 TTA-ATAAATTTTAATATAATA-ATAAT
1 TTATAT-TATTTTAAAATAATATATAAT
1040770 TTATATTATTT
1 TTATATTATTT
1040781 AAATTTTAAC
Statistics
Matches: 31, Mismatches: 4, Indels: 7
0.74 0.10 0.17
Matches are distributed among these distances:
26 12 0.39
27 13 0.42
28 3 0.10
29 3 0.10
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (27 bp):
TTATATTATTTTAAAATAATATATAAT
Found at i:1040982 original size:20 final size:20
Alignment explanation
Indices: 1040957--1040998 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
1040947 ATTTGTGTTT
* *
1040957 TAATTATATTTTAATTATTA
1 TAATTATATTTAAAATATTA
*
1040977 TAATTATGTTTAAAATATTA
1 TAATTATATTTAAAATATTA
1040997 TA
1 TA
1040999 TATTCTTTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (20 bp):
TAATTATATTTAAAATATTA
Found at i:1041726 original size:21 final size:19
Alignment explanation
Indices: 1041700--1041743 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 19
1041690 AATACATATA
1041700 AATAATTATATGATTTTATTT
1 AATAATTA-ATGATTTTA-TT
*
1041721 AATAATTAATTATTTTATT
1 AATAATTAATGATTTTATT
1041740 AATA
1 AATA
1041744 TTCATAAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 6 0.27
20 8 0.36
21 8 0.36
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (19 bp):
AATAATTAATGATTTTATT
Found at i:1042452 original size:19 final size:20
Alignment explanation
Indices: 1042411--1042454 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
1042401 ACGTTATTTA
* *
1042411 GTATTTTTATTTTTTATATT
1 GTATTTATATTATTTATATT
1042431 GTATTTATATTATTTA-ATT
1 GTATTTATATTATTTATATT
1042450 GTATT
1 GTATT
1042455 ACATGTAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 8 0.36
20 14 0.64
ACGTcount: A:0.25, C:0.00, G:0.07, T:0.68
Consensus pattern (20 bp):
GTATTTATATTATTTATATT
Found at i:1047041 original size:80 final size:78
Alignment explanation
Indices: 1046925--1047130 Score: 216
Period size: 80 Copynumber: 2.6 Consensus size: 78
1046915 GATAATAACG
* * * * * * *
1046925 GGGTTGGAGTGTCCCCTTGAAAATAACGGGGCTGGAGTATCCCCGGTTGTGAGAAATCGATGA-T
1 GGGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAAT-ATT
*
1046989 TAGAAAAAAAAAATC
65 TAG-AAAAAAAAACC
* *
1047004 GGGATTGGAGTATCCCCTCGGAAATAACGAGGTTGGAGTATCCCCAATTATGAGAAATCAATATT
1 GGG-TTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATATT
* ** * *
1047069 TTGGGAATAAAGCC
65 TAGAAAAAAAAACC
**
1047083 GAGGTTGGAGTATCCCCTCGGAGGTAACGGGGTTGGAGTATCCCCGAT
1 G-GGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGAT
1047131 GAAAAAACGA
Statistics
Matches: 105, Mismatches: 19, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
79 51 0.49
80 54 0.51
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.24
Consensus pattern (78 bp):
GGGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATATTT
AGAAAAAAAAACC
Found at i:1047296 original size:51 final size:51
Alignment explanation
Indices: 1047141--1047310 Score: 187
Period size: 52 Copynumber: 3.3 Consensus size: 51
1047131 GAAAAAACGA
* * * *
1047141 GGTTGGAGTATCCTCAATTGTGAAAAATTGGTGTTTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTGTGAAAAATTGGTG-TTTTGAAAATAAAACCGG
* * ** * *
1047193 AGTTGGAGTATCCTCGATTAAAGGAAAATTGGTGTTTTGAAAATAAAGCCGG
1 GGTTGGAGTATCCCCGATT-GTGAAAAATTGGTGTTTTGAAAATAAAACCGG
* * *
1047245 GGTTGGAGTATCCCCGATTGTGAAAAATCGATGATTTGAAAATAAAACCGG
1 GGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTGAAAATAAAACCGG
* *
1047296 GATTGGAGTACCCCC
1 GGTTGGAGTATCCCC
1047311 TCGGAGATAA
Statistics
Matches: 98, Mismatches: 19, Indels: 3
0.82 0.16 0.03
Matches are distributed among these distances:
51 38 0.39
52 49 0.50
53 11 0.11
ACGTcount: A:0.32, C:0.12, G:0.26, T:0.29
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTGAAAATAAAACCGG
Found at i:1047336 original size:79 final size:80
Alignment explanation
Indices: 1047242--1047421 Score: 247
Period size: 80 Copynumber: 2.3 Consensus size: 80
1047232 AAAATAAAGC
* *
1047242 CGGGGTTGGAGTATCCCCGATTGTGAAAAATCGATGATTTGA-AAATAAAACC-GGGATTGGAGT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATCAAT-ATTTGAGAAATAAAACCGGGGATTGGAGT
* *
1047305 ACCCCCTCGGAGATAA
65 ACCCCCTCGAAAATAA
* * * * *
1047321 CGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTAGAAATAAAGCCGGGGGTTGGAGTA
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATCAATATTTGAGAAATAAAACCGGGGATTGGAGTA
*
1047386 TCCCCTCGAAAATAA
66 CCCCCTCGAAAATAA
1047401 CGGGGTTGGAGTATCCCCGAT
1 CGGGGTTGGAGTATCCCCGAT
1047422 GATTAACAGG
Statistics
Matches: 89, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
78 5 0.06
79 40 0.45
80 44 0.49
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.24
Consensus pattern (80 bp):
CGGGGTTGGAGTATCCCCGATTATGAAAAATCAATATTTGAGAAATAAAACCGGGGATTGGAGTA
CCCCCTCGAAAATAA
Found at i:1047439 original size:27 final size:27
Alignment explanation
Indices: 1047398--1047450 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
1047388 CCCTCGAAAA
* *
1047398 TAACGGGGTTGGAGTATCCCCGATGAT
1 TAACAGGGTTAGAGTATCCCCGATGAT
1047425 TAACAGGGTTAGAGTATCCCCGATGA
1 TAACAGGGTTAGAGTATCCCCGATGA
1047451 AAAATTGATG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (27 bp):
TAACAGGGTTAGAGTATCCCCGATGAT
Found at i:1047515 original size:51 final size:51
Alignment explanation
Indices: 1047450--1047548 Score: 141
Period size: 51 Copynumber: 1.9 Consensus size: 51
1047440 ATCCCCGATG
1047450 AAAAATTGATGTTTT-AGAAATAAAATCGGAGTT-GGAGTATCCCCGATTATA
1 AAAAATTGATGTTTTGA-AAATAAAATCGGAGTTGGGA-TATCCCCGATTATA
*
1047501 AAAAATT-AGTGTTTTGAAAATGAAATCGGAGTTGGGATATCCCCGATT
1 AAAAATTGA-TGTTTTGAAAATAAAATCGGAGTTGGGATATCCCCGATT
1047549 GCGGAGAATT
Statistics
Matches: 44, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
50 1 0.02
51 39 0.89
52 4 0.09
ACGTcount: A:0.37, C:0.10, G:0.21, T:0.31
Consensus pattern (51 bp):
AAAAATTGATGTTTTGAAAATAAAATCGGAGTTGGGATATCCCCGATTATA
Found at i:1049926 original size:13 final size:13
Alignment explanation
Indices: 1049908--1049933 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1049898 CAAAAAAAAG
1049908 ATGTATCGATACA
1 ATGTATCGATACA
1049921 ATGTATCGATACA
1 ATGTATCGATACA
1049934 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1049950 original size:33 final size:34
Alignment explanation
Indices: 1049887--1049953 Score: 109
Period size: 34 Copynumber: 2.0 Consensus size: 34
1049877 AACTTCCTAG
1049887 ATGTATCGATACAAAAAAAAGATGTATCGATACA
1 ATGTATCGATACAAAAAAAAGATGTATCGATACA
* *
1049921 ATGTATCGATACACAGAAAA-ATGTATCGATACA
1 ATGTATCGATACAAAAAAAAGATGTATCGATACA
1049954 TTTCCTTGGC
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 13 0.42
34 18 0.58
ACGTcount: A:0.48, C:0.13, G:0.15, T:0.24
Consensus pattern (34 bp):
ATGTATCGATACAAAAAAAAGATGTATCGATACA
Found at i:1049995 original size:13 final size:13
Alignment explanation
Indices: 1049977--1050028 Score: 50
Period size: 13 Copynumber: 3.5 Consensus size: 13
1049967 AGCTTCCTAG
1049977 CGATACATTGTAT
1 CGATACATTGTAT
1049990 CGATACAAAACTTATGTAT
1 CGATAC---A-TT--GTAT
1050009 CGATACATTGTAT
1 CGATACATTGTAT
1050022 CGATACA
1 CGATACA
1050029 ACACTTATGT
Statistics
Matches: 33, Mismatches: 0, Indels: 12
0.73 0.00 0.27
Matches are distributed among these distances:
13 17 0.52
15 2 0.06
16 2 0.06
17 2 0.06
19 10 0.30
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (13 bp):
CGATACATTGTAT
Found at i:1050009 original size:19 final size:19
Alignment explanation
Indices: 1049985--1050049 Score: 79
Period size: 19 Copynumber: 3.7 Consensus size: 19
1049975 AGCGATACAT
1049985 TGTATCGATACAAAACTTA
1 TGTATCGATACAAAACTTA
1050004 TGTATCGATAC---A--T-
1 TGTATCGATACAAAACTTA
*
1050017 TGTATCGATACAACACTTA
1 TGTATCGATACAAAACTTA
1050036 TGTATCGATACAAA
1 TGTATCGATACAAA
1050050 TTGCTGAAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 12
0.75 0.02 0.23
Matches are distributed among these distances:
13 11 0.28
14 1 0.03
16 2 0.05
18 1 0.03
19 24 0.62
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.32
Consensus pattern (19 bp):
TGTATCGATACAAAACTTA
Found at i:1050018 original size:32 final size:32
Alignment explanation
Indices: 1049977--1050047 Score: 133
Period size: 32 Copynumber: 2.2 Consensus size: 32
1049967 AGCTTCCTAG
1049977 CGATACATTGTATCGATACAAAACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
*
1050009 CGATACATTGTATCGATACAACACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
1050041 CGATACA
1 CGATACA
1050048 AATTGCTGAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.37, C:0.18, G:0.13, T:0.32
Consensus pattern (32 bp):
CGATACATTGTATCGATACAAAACTTATGTAT
Found at i:1051266 original size:60 final size:59
Alignment explanation
Indices: 1050831--1051476 Score: 722
Period size: 55 Copynumber: 11.3 Consensus size: 59
1050821 ATAAAGTGTA
* * *
1050831 TCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTT----G-AAAGGCG
1 TCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
*
1050886 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT--AAG---AGGTG
1 TCCTGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
** *
1050941 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT----G-AAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* * *
1050996 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT---AG--GAGGTG
1 TCCTGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
** * * *
1051051 TCCTGCTCTTTGAGGACTGGAAAATACCACCAACTTATGTGGGCTTT----G-AAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
** *
1051106 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT----G-AAAGGGG
1 TCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* * *
1051161 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGCG
*
1051222 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGGGTGGGCTTTAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* * * *
1051281 TCCCGCTGTTTGAAGACTGAAGGTGCCACTAACTTGTGTGGGCTTTAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
1051340 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* * * *
1051399 TCCCGCTCTTTGAGGACTGAAAGTGCCACCAATTTGTGTGGGCTTTAAAAAGAAAAGGCA
1 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGCG
*
1051459 TCCTGCTCTTTGAAGACT
1 TCCTGCTCTTTGAGGACT
1051477 AAAAAGCGGA
Statistics
Matches: 529, Mismatches: 44, Indels: 31
0.88 0.07 0.05
Matches are distributed among these distances:
53 1 0.00
54 3 0.01
55 281 0.53
56 3 0.01
57 1 0.00
59 163 0.31
60 55 0.10
61 22 0.04
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (59 bp):
TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
Found at i:1052465 original size:1 final size:1
Alignment explanation
Indices: 1052461--1052530 Score: 59
Period size: 1 Copynumber: 70.0 Consensus size: 1
1052451 CTTTTCTCTC
* * * * * ** * *
1052461 TTTTTCTTTGTTTTGTTTTTTTGTTTTGTTTTTTTTTTTGCTTTTTTTTTCTTTTTTTTTTTGTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1052526 TTTTT
1 TTTTT
1052531 GAAGAGAATG
Statistics
Matches: 52, Mismatches: 17, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 52 1.00
ACGTcount: A:0.00, C:0.04, G:0.09, T:0.87
Consensus pattern (1 bp):
T
Found at i:1052530 original size:12 final size:12
Alignment explanation
Indices: 1052471--1052530 Score: 86
Period size: 12 Copynumber: 5.0 Consensus size: 12
1052461 TTTTTCTTTG
1052471 TTTTGTTTTTTT
1 TTTTGTTTTTTT
1052483 GTTTTGTTTTTTT
1 -TTTTGTTTTTTT
*
1052496 TTTTG-CTTTTT
1 TTTTGTTTTTTT
*
1052507 TTTTCTTTTTTT
1 TTTTGTTTTTTT
1052519 TTTTGTTTTTTT
1 TTTTGTTTTTTT
1052531 GAAGAGAATG
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
11 9 0.21
12 21 0.50
13 12 0.29
ACGTcount: A:0.00, C:0.03, G:0.08, T:0.88
Consensus pattern (12 bp):
TTTTGTTTTTTT
Found at i:1053592 original size:19 final size:19
Alignment explanation
Indices: 1053568--1053617 Score: 100
Period size: 19 Copynumber: 2.6 Consensus size: 19
1053558 TAGCCAAACT
1053568 TGTATCGATACAGCAAGTA
1 TGTATCGATACAGCAAGTA
1053587 TGTATCGATACAGCAAGTA
1 TGTATCGATACAGCAAGTA
1053606 TGTATCGATACA
1 TGTATCGATACA
1053618 CAAAAAATTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.28
Consensus pattern (19 bp):
TGTATCGATACAGCAAGTA
Found at i:1055867 original size:21 final size:21
Alignment explanation
Indices: 1055834--1055878 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
1055824 TTGCAAGTTG
*
1055834 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
1055856 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
1055876 AAA
1 AAA
1055879 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:1057702 original size:15 final size:15
Alignment explanation
Indices: 1057682--1057712 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
1057672 TAAAAATGTC
*
1057682 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
1057697 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
1057712 C
1 C
1057713 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:1059810 original size:13 final size:13
Alignment explanation
Indices: 1059792--1059829 Score: 76
Period size: 13 Copynumber: 2.9 Consensus size: 13
1059782 CATTTTTCTC
1059792 TGTATCGATACAT
1 TGTATCGATACAT
1059805 TGTATCGATACAT
1 TGTATCGATACAT
1059818 TGTATCGATACA
1 TGTATCGATACA
1059830 GGGTGATTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.37
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1062391 original size:13 final size:13
Alignment explanation
Indices: 1062373--1062398 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1062363 TACAGCAAGT
1062373 ATGTATCGATACA
1 ATGTATCGATACA
1062386 ATGTATCGATACA
1 ATGTATCGATACA
1062399 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1064262 original size:21 final size:21
Alignment explanation
Indices: 1064237--1064320 Score: 78
Period size: 21 Copynumber: 4.0 Consensus size: 21
1064227 AAAAAACACG
* *
1064237 AATTAGGCAAACGTATTGATA
1 AATTAAGCAAATGTATTGATA
* * *
1064258 CATTAAGTAAATGTATCGATA
1 AATTAAGCAAATGTATTGATA
* * *
1064279 AAATAGGCAAATGTATTAATA
1 AATTAAGCAAATGTATTGATA
* *
1064300 TATTAAGTAAATGTATTGATA
1 AATTAAGCAAATGTATTGATA
1064321 TAATCACTTG
Statistics
Matches: 47, Mismatches: 16, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
21 47 1.00
ACGTcount: A:0.45, C:0.06, G:0.15, T:0.33
Consensus pattern (21 bp):
AATTAAGCAAATGTATTGATA
Found at i:1064305 original size:42 final size:42
Alignment explanation
Indices: 1064240--1064320 Score: 126
Period size: 42 Copynumber: 1.9 Consensus size: 42
1064230 AAACACGAAT
*
1064240 TAGGCAAACGTATTGATACATTAAGTAAATGTATCGATAAAA
1 TAGGCAAACGTATTAATACATTAAGTAAATGTATCGATAAAA
* * *
1064282 TAGGCAAATGTATTAATATATTAAGTAAATGTATTGATA
1 TAGGCAAACGTATTAATACATTAAGTAAATGTATCGATA
1064321 TAATCACTTG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.44, C:0.06, G:0.16, T:0.33
Consensus pattern (42 bp):
TAGGCAAACGTATTAATACATTAAGTAAATGTATCGATAAAA
Found at i:1064321 original size:21 final size:21
Alignment explanation
Indices: 1064249--1064322 Score: 85
Period size: 21 Copynumber: 3.5 Consensus size: 21
1064239 TTAGGCAAAC
*
1064249 GTATTGATACATTAAGTAAAT
1 GTATTGATATATTAAGTAAAT
* * * * *
1064270 GTATCGATAAAATAGGCAAAT
1 GTATTGATATATTAAGTAAAT
*
1064291 GTATTAATATATTAAGTAAAT
1 GTATTGATATATTAAGTAAAT
1064312 GTATTGATATA
1 GTATTGATATA
1064323 ATCACTTGGT
Statistics
Matches: 41, Mismatches: 12, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.45, C:0.04, G:0.15, T:0.36
Consensus pattern (21 bp):
GTATTGATATATTAAGTAAAT
Found at i:1065852 original size:155 final size:155
Alignment explanation
Indices: 1065563--1066063 Score: 517
Period size: 154 Copynumber: 3.2 Consensus size: 155
1065553 GAAATTCAAG
* * * ** ** *
1065563 AAAAATTACGAAAATGCCTC-AAGGAGATACCCTCGACATTAAAGTA--CCAATACCCCTAAAGG
1 AAAAATTACGAAAATGCCCCTAAGG-GATACCTTCGACATAAAAGTATCCCGGTAAACCTAAAAG
** ** * * * * * *
1065625 ACCAAAAAAGGATTTTAAAAGGGGTAAACATATCCTAAATACCTACCTTCGGCATAAAAGCGGAC
65 ACTTAAAAAGGA-TAGAAATGGGATGAACCTATCCTAAATACCCACCTTTGGCATAAAAGCGGAC
* * *
1065690 CCAGTGACAACCTAGGACTCGATTTTA
129 CCGGTGACAACCTAGGACTCGGTTCTA
* * ** *
1065717 AAAAATTATGAAAATGCCCCTAAGGGATACCTTCGACATAAAAGTATCCCGTTAATGCTAAAGGA
1 AAAAATTACGAAAATGCCCCTAAGGGATACCTTCGACATAAAAGTATCCCGGTAAACCTAAAAGA
*
1065782 CTTAAAAAGGATAGAAATGGGATGAACCTATCCTAAATGCCCACCTTTGGCATAAAAGCGGACCC
66 CTTAAAAAGGATAGAAATGGGATGAACCTATCCTAAATACCCACCTTTGGCATAAAAGCGGACCC
* * *
1065847 GGTGACGACCTAGGAATTGGTTCTA
131 GGTGACAACCTAGGACTCGGTTCTA
* * * * *
1065872 AAAAA-TACGAAAATGCCTCTACGGG-TAACCTTCGACGTGAAAGTATCCTGGTAAACCTAAAAG
1 AAAAATTACGAAAATGCCCCTAAGGGAT-ACCTTCGACATAAAAGTATCCCGGTAAACCTAAAAG
* * * *
1065935 ACTTAAAAAGGATATAGATGGGGTGAACCTATCCTAAATACCCACCTTTGGCATAGAAGCGGACC
65 ACTTAAAAAGGATAGAAATGGGATGAACCTATCCTAAATACCCACCTTTGGCATAAAAGCGGACC
* * *
1066000 CGATGGCAACCTAGGACTCGGCTCTA
130 CGGTGACAACCTAGGACTCGGTTCTA
* * * *
1066026 AGAAATTACAAAAATGCCCCTATAGGTATACTTTCGAC
1 AAAAATTACGAAAATGCCCCTA-AGGGATACCTTCGAC
1066064 GTGAAAATAC
Statistics
Matches: 287, Mismatches: 53, Indels: 12
0.82 0.15 0.03
Matches are distributed among these distances:
153 1 0.00
154 167 0.58
155 87 0.30
156 31 0.11
157 1 0.00
ACGTcount: A:0.38, C:0.22, G:0.19, T:0.22
Consensus pattern (155 bp):
AAAAATTACGAAAATGCCCCTAAGGGATACCTTCGACATAAAAGTATCCCGGTAAACCTAAAAGA
CTTAAAAAGGATAGAAATGGGATGAACCTATCCTAAATACCCACCTTTGGCATAAAAGCGGACCC
GGTGACAACCTAGGACTCGGTTCTA
Found at i:1065956 original size:154 final size:155
Alignment explanation
Indices: 1065655--1066069 Score: 521
Period size: 154 Copynumber: 2.7 Consensus size: 155
1065645 GGGGTAAACA
* * * * *
1065655 TATCCTAAATACCTACCTTCGGCATAAAAGCGGACCCAGTGACAACCTAGGACTCGATTTTAAAA
1 TATCCTAAATACCCACCTTTGGCATAAAAGCGGACCCGGTGACAACCTAGGACTCGGTTCTAAAA
* * * * ** *
1065720 AATTATGAAAATGCCCCTAAGGG-ATACCTTCGACATAAAAGTATCCCGTTAATGCTAAAGGACT
66 AA-TACGAAAATGCCCCTAAGGGTATACCTTCGACGTGAAAGTATCCCGGTAAACCTAAAAGACT
1065784 TAAAAAGGATAGAAATGGGATGAACC
130 TAAAAAGGATAGAAATGGGATGAACC
* * * *
1065810 TATCCTAAATGCCCACCTTTGGCATAAAAGCGGACCCGGTGACGACCTAGGAATTGGTTCTAAAA
1 TATCCTAAATACCCACCTTTGGCATAAAAGCGGACCCGGTGACAACCTAGGACTCGGTTCTAAAA
* * *
1065875 AATACGAAAATGCCTCTACGGGTA-ACCTTCGACGTGAAAGTATCCTGGTAAACCTAAAAGACTT
66 AATACGAAAATGCCCCTAAGGGTATACCTTCGACGTGAAAGTATCCCGGTAAACCTAAAAGACTT
* * *
1065939 AAAAAGGATATAGATGGGGTGAACC
131 AAAAAGGATAGAAATGGGATGAACC
* * * *
1065964 TATCCTAAATACCCACCTTTGGCATAGAAGCGGACCCGATGGCAACCTAGGACTCGGCTCTAAGA
1 TATCCTAAATACCCACCTTTGGCATAAAAGCGGACCCGGTGACAACCTAGGACTCGGTTCTAA-A
* * *
1066029 AATTACAAAAATGCCCCTATA-GGTATACTTTCGACGTGAAA
65 AAATACGAAAATGCCCCTA-AGGGTATACCTTCGACGTGAAA
1066070 ATACCCGATA
Statistics
Matches: 221, Mismatches: 35, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
154 127 0.57
155 80 0.36
156 14 0.06
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.22
Consensus pattern (155 bp):
TATCCTAAATACCCACCTTTGGCATAAAAGCGGACCCGGTGACAACCTAGGACTCGGTTCTAAAA
AATACGAAAATGCCCCTAAGGGTATACCTTCGACGTGAAAGTATCCCGGTAAACCTAAAAGACTT
AAAAAGGATAGAAATGGGATGAACC
Found at i:1068605 original size:165 final size:164
Alignment explanation
Indices: 1068193--1068795 Score: 615
Period size: 165 Copynumber: 3.7 Consensus size: 164
1068183 GAAAATGAGG
* * *
1068193 ATTTCAAAGAAAAAATTTAAAA-ACTCATGAAAATGAATGACTTTTTGAAAACTGAATTAATAT-
1 ATTTCAAAGAAAAAA-TCAAAAGA-TAATGAAAATGAATGAATTTTTGAAAACTGAATTAATATA
* * * * * * *
1068256 AAATCAAATTATGATGTTTTATGAATTTCAAAAATTGAAAACCGAGAAAAA-CCCCTCGAAAAAG
64 AAAT-AAATAATAATATTTGATGAATTTTAAAAATTG-AAACCAAGAAAAATCCCCTCGAAAAAA
* * * * * *
1068320 TTTACGGAGTAGAAAATACCGTATTTAGGAAAAAGGGGA
127 TTTACAGAGTAGAAAACACCATATTT-CGAAAAAGAGAA
* *
1068359 GTTTC-AAG---GAA--AAAA-ATAA--AAAATGAATGAATTTTTGAAAACTGAATTAATATAAA
1 ATTTCAAAGAAAAAATCAAAAGATAATGAAAATGAATGAATTTTTGAAAACTGAATTAATATAAA
* * * *
1068415 ATAAAAAATGATATTTGATGAATTTTAAAAATTGAAACCAAGAAAAATTCTCTCGAAAAAATTTA
66 ATAAATAATAATATTTGATGAATTTTAAAAATTGAAACCAAGAAAAATCCCCTCGAAAAAATTTA
* * *
1068480 CAGAGTAGAAAATACTATATTTCCG-AAACG-GAA
131 CAGAGTAGAAAACACCATATTT-CGAAAAAGAGAA
* *
1068513 AGTTTCAAGGAAAAAAATCAAAA-ATGAATGAAAATGAATGTATTTTTGAAAACTGAATTAATAT
1 A-TTTCAAAG-AAAAAATCAAAAGAT-AATGAAAATGAATGAATTTTTGAAAACTGAATTAATAT
* * *
1068577 AAAATAAATGATAATGTTTGATGAATTTTAAAAATTTTAAACCAAGAAAAATCCCCTCGAAAAAA
63 AAAATAAATAATAATATTTGATGAATTTTAAAAA-TTGAAACCAAGAAAAATCCCCTCGAAAAAA
*
1068642 TTTACAGAGTAGAAAACACCATATTTCGAAAAAGAGGA
127 TTTACAGAGTAGAAAACACCATATTTCGAAAAAGAGAA
* * * ** *
1068680 ATTTCAAAGAAAAAATCAAAAGCTTATGAAAATGAATGAATTTTTAAAAACTGAATTAGCATGAA
1 ATTTCAAAGAAAAAATCAAAAGATAATGAAAATGAATGAATTTTTGAAAACTGAATTAATATAAA
* * * * **
1068745 CTAAATAAAAATATTTTATGAATTTTAAAAATTATAAATTAAGAAAAATCC
66 ATAAATAATAATATTTGATGAATTTTAAAAATT-GAAACCAAGAAAAATCC
1068796 TCCCTAAAAA
Statistics
Matches: 369, Mismatches: 50, Indels: 37
0.81 0.11 0.08
Matches are distributed among these distances:
154 2 0.01
155 20 0.05
156 96 0.26
157 4 0.01
158 2 0.01
159 5 0.01
160 2 0.01
162 8 0.02
163 2 0.01
164 2 0.01
165 156 0.42
166 67 0.18
167 3 0.01
ACGTcount: A:0.51, C:0.09, G:0.13, T:0.28
Consensus pattern (164 bp):
ATTTCAAAGAAAAAATCAAAAGATAATGAAAATGAATGAATTTTTGAAAACTGAATTAATATAAA
ATAAATAATAATATTTGATGAATTTTAAAAATTGAAACCAAGAAAAATCCCCTCGAAAAAATTTA
CAGAGTAGAAAACACCATATTTCGAAAAAGAGAA
Found at i:1069695 original size:90 final size:90
Alignment explanation
Indices: 1069566--1069745 Score: 324
Period size: 90 Copynumber: 2.0 Consensus size: 90
1069556 AACACATTAC
*
1069566 CTAAGTTTGGGATGATGCAAGATGAACCTATACTTACTTGTTTGGATTTGGTGATGCCCCATGAT
1 CTAAGTTTGAGATGATGCAAGATGAACCTATACTTACTTGTTTGGATTTGGTGATGCCCCATGAT
*
1069631 GCTTACATATAAGCTTAAAATTGGG
66 GCTTACATATAAGCTCAAAATTGGG
*
1069656 CTAAGTTTGAGATGATGCAAGATGAACCTATACTTACTTGTTTGGTTTTGGTGATGCCCCATGAT
1 CTAAGTTTGAGATGATGCAAGATGAACCTATACTTACTTGTTTGGATTTGGTGATGCCCCATGAT
*
1069721 GCTTGCATATAAGCTCAAAATTGGG
66 GCTTACATATAAGCTCAAAATTGGG
1069746 TATCTATAAT
Statistics
Matches: 86, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
90 86 1.00
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.34
Consensus pattern (90 bp):
CTAAGTTTGAGATGATGCAAGATGAACCTATACTTACTTGTTTGGATTTGGTGATGCCCCATGAT
GCTTACATATAAGCTCAAAATTGGG
Found at i:1077321 original size:2 final size:2
Alignment explanation
Indices: 1077314--1077346 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
1077304 TCCTGCCTGT
1077314 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1077347 TACGATCACG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1080846 original size:2 final size:2
Alignment explanation
Indices: 1080841--1080887 Score: 85
Period size: 2 Copynumber: 23.5 Consensus size: 2
1080831 ATATATATAT
*
1080841 AG AG AG AG AG AG AG AA AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1080883 AG AG A
1 AG AG A
1080888 TAGCATGTTT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (2 bp):
AG
Found at i:1081039 original size:31 final size:33
Alignment explanation
Indices: 1080998--1081078 Score: 89
Period size: 31 Copynumber: 2.5 Consensus size: 33
1080988 TCATATACAA
* *
1080998 ATAC-AAATTTTAAAATTAT-AAAT-ATTTAGT
1 ATACAAAATTTTAAAATTATCAAATAAATAAGT
*
1081028 ATACAAAATTTTTAAA-TATCAAATAAATAAGT
1 ATACAAAATTTTAAAATTATCAAATAAATAAGT
*
1081060 ATAAAAATATTTTAAAATT
1 ATACAAA-ATTTTAAAATT
1081079 TGTGAATTAT
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
30 7 0.17
31 14 0.34
32 11 0.27
33 8 0.20
34 1 0.02
ACGTcount: A:0.54, C:0.04, G:0.02, T:0.40
Consensus pattern (33 bp):
ATACAAAATTTTAAAATTATCAAATAAATAAGT
Found at i:1082165 original size:8 final size:8
Alignment explanation
Indices: 1082152--1082187 Score: 63
Period size: 8 Copynumber: 4.5 Consensus size: 8
1082142 AAAGGAAAAG
1082152 AAAAAATA
1 AAAAAATA
1082160 AAAAAATA
1 AAAAAATA
1082168 AAAAAATA
1 AAAAAATA
*
1082176 AAAAAAGA
1 AAAAAATA
1082184 AAAA
1 AAAA
1082188 CAGAGATTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 27 1.00
ACGTcount: A:0.89, C:0.00, G:0.03, T:0.08
Consensus pattern (8 bp):
AAAAAATA
Found at i:1082171 original size:16 final size:16
Alignment explanation
Indices: 1082132--1082187 Score: 69
Period size: 16 Copynumber: 3.4 Consensus size: 16
1082122 GGTTCTCAGT
*
1082132 AGAAAAAACTAAAGGAAA
1 AGAAAAAAATAAA--AAA
1082150 AG-AAAAAATAAAAAA
1 AGAAAAAAATAAAAAA
*
1082165 ATAAAAAAATAAAAAA
1 AGAAAAAAATAAAAAA
1082181 AGAAAAA
1 AGAAAAA
1082188 CAGAGATTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
15 4 0.12
16 19 0.56
17 9 0.26
18 2 0.06
ACGTcount: A:0.82, C:0.02, G:0.09, T:0.07
Consensus pattern (16 bp):
AGAAAAAAATAAAAAA
Found at i:1083427 original size:34 final size:34
Alignment explanation
Indices: 1083384--1083454 Score: 133
Period size: 34 Copynumber: 2.1 Consensus size: 34
1083374 TATAGGTATG
*
1083384 TTTCTAGTATATAGAAGTCTCCTCATTGATTATT
1 TTTCTAGTATATAGAAGTCACCTCATTGATTATT
1083418 TTTCTAGTATATAGAAGTCACCTCATTGATTATT
1 TTTCTAGTATATAGAAGTCACCTCATTGATTATT
1083452 TTT
1 TTT
1083455 AAATAAAGAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.27, C:0.14, G:0.11, T:0.48
Consensus pattern (34 bp):
TTTCTAGTATATAGAAGTCACCTCATTGATTATT
Found at i:1085070 original size:23 final size:21
Alignment explanation
Indices: 1085020--1085070 Score: 50
Period size: 23 Copynumber: 2.2 Consensus size: 21
1085010 TAAAAAATTG
1085020 AAAAATGGAAAATGAAAAAAA
1 AAAAATGGAAAATGAAAAAAA
1085041 ATCAAAATGGAGAAAAT-AAAAAACA
1 A--AAAAT-G-GAAAATGAAAAAA-A
1085066 AAAAA
1 AAAAA
1085071 GAAAACAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
21 1 0.04
23 9 0.36
24 7 0.28
25 8 0.32
ACGTcount: A:0.75, C:0.04, G:0.12, T:0.10
Consensus pattern (21 bp):
AAAAATGGAAAATGAAAAAAA
Found at i:1087130 original size:165 final size:163
Alignment explanation
Indices: 1086915--1087314 Score: 547
Period size: 165 Copynumber: 2.4 Consensus size: 163
1086905 ATTTTTGGAG
* * *
1086915 TTTTCTTCTCCGTAAATTTTTTCG-GGAGGATTTTTCTTAATTTGTAATTTTCAAAATTCATCAA
1 TTTTCTACTCCGTAAATTTTTT-GAGG-GGATTTTTCTT--TTTTTAATTTTTAAAATTCATCAA
* *
1086979 ATATTTTTATTTATTTCATATTAATTCGGTTTTCAAAAATTCATTCATTTTCATTCA-TTTTTGA
62 ATATTTTTATTTATTTCATATTAATTCGGTTTTCAAAAATTAATTCATTTTCA-TCAGTTTTTAA
*
1087043 TTTTTT-CTTGAAAT-TCCCTCTTTTTCGAAATATGGTA
126 TTTTTTCCTTGAAATCTCCCT-TTTTTCGAAATACGGTA
* *
1087080 TTTTCTACTTCGTAAATTGTTTTGAGGGGATTTTTCTTGGTTTTTAATTTTTAAAATTTATCAAA
1 TTTTCTACTCCGTAAATT-TTTTGAGGGGATTTTTCTT--TTTTTAATTTTTAAAATTCATCAAA
* *
1087145 TATTTTTATTTATTTCATATTAATTCTGTTTTCAAAAATTAATTCATTTTCATGAGTTTTTTAAT
63 TATTTTTATTTATTTCATATTAATTCGGTTTTCAAAAATTAATTCATTTTCATCAG-TTTTTAAT
*
1087210 TTTTTCCTTGAAATCTCCCTTTTTTCGAAATACGGTG
127 TTTTTCCTTGAAATCTCCCTTTTTTCGAAATACGGTA
* *
1087247 TTTTGTACTCCGTAAATTTGTTTGAGGGGGTTTTTCTTTTTTTCAATTTTTAAAATTCATCAAAT
1 TTTTCTACTCCGTAAATTT-TTTGAGGGGATTTTTCTTTTTTT-AATTTTTAAAATTCATCAAAT
1087312 ATT
64 ATT
1087315 ATCATTTGAA
Statistics
Matches: 210, Mismatches: 17, Indels: 15
0.87 0.07 0.06
Matches are distributed among these distances:
164 2 0.01
165 105 0.50
166 42 0.20
167 56 0.27
168 5 0.02
ACGTcount: A:0.25, C:0.12, G:0.10, T:0.53
Consensus pattern (163 bp):
TTTTCTACTCCGTAAATTTTTTGAGGGGATTTTTCTTTTTTTAATTTTTAAAATTCATCAAATAT
TTTTATTTATTTCATATTAATTCGGTTTTCAAAAATTAATTCATTTTCATCAGTTTTTAATTTTT
TCCTTGAAATCTCCCTTTTTTCGAAATACGGTA
Found at i:1087399 original size:166 final size:163
Alignment explanation
Indices: 1086915--1087450 Score: 536
Period size: 166 Copynumber: 3.2 Consensus size: 163
1086905 ATTTTTGGAG
* * *
1086915 TTTTCTTCTCCGTAAATTT-TTTCG-GGAGGATTTTTCTTAATTTGTAATTTTCAAAATTCATCA
1 TTTTCTACTCCGTAAATTTGTTT-GAGG-GGATTTTTCTT-ATTTTTAATTTTTAAAATTCATCA
* * *
1086978 AATATTTTTATTTATTTCATATTAATTCGGTTTTCAAAAATTCATTCATTTTCATTCA-TTTTTG
63 AATATTTTTATTTATTTCATATTAATT-TGTTTTCAAAAATTAATTCATTTTCA-TGAGTTTTTG
*
1087042 ATTTTTTCTTGAAATTC-CCTCTTTTTCGAAATATGGTA
126 ATTTTTTCTTGAAATTCTCCT-TTTTTCGAAATACGGTA
* * *
1087080 TTTTCTACTTCGTAAA-TTGTTTTGAGGGGATTTTTCTTGGTTTTTAATTTTTAAAATTTATCAA
1 TTTTCTACTCCGTAAATTTG-TTTGAGGGGATTTTTCTT-ATTTTTAATTTTTAAAATTCATCAA
*
1087144 ATATTTTTATTTATTTCATATTAATTCTGTTTTCAAAAATTAATTCATTTTCATGAGTTTTTTAA
64 ATATTTTTATTTATTTCATATTAATT-TGTTTTCAAAAATTAATTCATTTTCATGAG-TTTTTGA
*
1087209 TTTTTTCCTTGAAA-TCTCCCTTTTTTCGAAATACGGTG
127 TTTTTT-CTTGAAATTCT-CCTTTTTTCGAAATACGGTA
* *
1087247 TTTTGTACTCCGTAAATTTGTTTGAGGGGGTTTTTCTT-TTTTTCAATTTTTAAAATTCATCAAA
1 TTTTCTACTCCGTAAATTTGTTTGAGGGGATTTTTCTTATTTTT-AATTTTTAAAATTCATCAAA
* * * * * * * * * *
1087311 TATTATCATTTGAATT-ATAGTAATTTATTTTTTAAAAAATGATTCATTTTCATGGGTTTTGGAT
65 TATTTTTATTT-ATTTCATATTAATTT-GTTTTCAAAAATTAATTCATTTTCATGAGTTTTTGA-
* * * * *
1087375 TTTTTTGGTTAAAATTCTCC-TTTTTCTAAGAAACCG-A
127 TTTTTT-CTTGAAATTCTCCTTTTTTCGAA-ATACGGTA
* *
1087412 GTTTTCTTCTCCGTAAATCTT-TTCGAGGGGATTTTTCTT
1 -TTTTCTACTCCGTAAAT-TTGTTTGAGGGGATTTTTCTT
1087451 GGTTTAGAAT
Statistics
Matches: 315, Mismatches: 39, Indels: 33
0.81 0.10 0.09
Matches are distributed among these distances:
164 4 0.01
165 117 0.37
166 127 0.40
167 61 0.19
168 6 0.02
ACGTcount: A:0.25, C:0.12, G:0.11, T:0.52
Consensus pattern (163 bp):
TTTTCTACTCCGTAAATTTGTTTGAGGGGATTTTTCTTATTTTTAATTTTTAAAATTCATCAAAT
ATTTTTATTTATTTCATATTAATTTGTTTTCAAAAATTAATTCATTTTCATGAGTTTTTGATTTT
TTCTTGAAATTCTCCTTTTTTCGAAATACGGTA
Found at i:1101795 original size:54 final size:54
Alignment explanation
Indices: 1101713--1102278 Score: 661
Period size: 55 Copynumber: 10.0 Consensus size: 54
1101703 GACGCCTTTT
*
1101713 CCTTTTAAAGCCCACAGAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACG
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACG
* * *
1101767 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCTTCAAAAAGCAGGACG
1 CCTTTTAAAGCCCACACAAGTTGGTGGCAC-CTT-TAGTCCTCAAAGAGCAGGACG
*
1101823 CCTTCGCCTTTCAAAGCCCACACAA-TTAGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACT
1 CC-T----TTT-AAAGCCCACACAAGTT-GGTGGCACC-TTTAGTCCTCAAAGAGCAGGACG
* * ** *
1101884 CCTTTTAAAGCCCACATAAATTGGTGGCATTTTTCAGTCCTCAAAGAGCAGGATG
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT-AGTCCTCAAAGAGCAGGACG
1101939 CTTTCTTTTTGCAAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACG
1 C---C-TTTT--AAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACG
* *
1101999 CCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGATGCCTTTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGA---C---G
*
1102059 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGATG
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACG
* * *
1102113 CCTTTCAAAGCCTACACAAGTTGGTGGCACCTTTCAGTCTTCAAAGAGCAGGACG
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT-AGTCCTCAAAGAGCAGGACG
* ** * * *
1102168 CCTTTCAAAGAGCACACAAGTTGGTGGCACCTTTCAAAT-CTCAAAGAGCAGGGCT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT--AGTCCTCAAAGAGCAGGACG
1102223 CCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCTAGTCCTCAAAGAGCAGGACG
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTT--TAGTCCTCAAAGAGCAGGACG
1102278 C
1 C
1102279 TCTCTCCTTT
Statistics
Matches: 442, Mismatches: 41, Indels: 57
0.82 0.08 0.11
Matches are distributed among these distances:
54 115 0.26
55 143 0.32
56 32 0.07
57 3 0.01
58 1 0.00
59 4 0.01
60 72 0.16
61 49 0.11
62 23 0.05
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (54 bp):
CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACG
Found at i:1102330 original size:94 final size:94
Alignment explanation
Indices: 1102207--1102382 Score: 275
Period size: 94 Copynumber: 1.9 Consensus size: 94
1102197 CCTTTCAAAT
* * *
1102207 CTCAAAGAGCAGGGCTCCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCTAGTCCTCAAAGAG
1 CTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCC-AGTCCTCAAAGAG
1102271 CAGGACG-CTCTCTCCTTTCACCCTTTAGTC
65 CAGGACGCCT-TCTCCTTTCACCCTTTAGTC
*
1102301 CTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGC
1 CTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGC
*
1102366 AGGATGCCTTCTCCTTT
66 AGGACGCCTTCTCCTTT
1102383 TAAAGCCCAC
Statistics
Matches: 75, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
94 69 0.92
95 6 0.08
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.24
Consensus pattern (94 bp):
CTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGC
AGGACGCCTTCTCCTTTCACCCTTTAGTC
Found at i:1102391 original size:61 final size:59
Alignment explanation
Indices: 1102292--1102443 Score: 192
Period size: 61 Copynumber: 2.6 Consensus size: 59
1102282 CTCCTTTCAC
1102292 CCTTT-AGTCCTCAAAGAGCAGGACGCCTT-T-C---AAAGCCCACACAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTAAAGCCCACACAAGTTGGTGG-A
*
1102346 CCTTTCAGTCCTCAAAGAGCAGGATGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGA
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTCTCC-TTTAAAGCCCACACAAGTTGGTGGA
* *
1102406 ACTTCCTAGTCCTCAAAGAGCAGGACG-CTCTCTCCTTT
1 CCTTTC-AGTCCTCAAAGAGCAGGACGCCT-TCTCCTTT
1102444 CACCTTTTAG
Statistics
Matches: 85, Mismatches: 4, Indels: 12
0.84 0.04 0.12
Matches are distributed among these distances:
54 5 0.06
55 23 0.27
56 1 0.01
57 1 0.01
60 10 0.12
61 45 0.53
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (59 bp):
CCTTTCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTAAAGCCCACACAAGTTGGTGGA
Found at i:1102438 original size:155 final size:154
Alignment explanation
Indices: 1102142--1102586 Score: 683
Period size: 155 Copynumber: 2.9 Consensus size: 154
1102132 GTTGGTGGCA
* ** *
1102142 CCTTTCAGTCTTCAAAGAGCAGGACGCCTTTCAAAGAGCACACAAGTTGGTGGCACCTTTCAAAT
1 CCTTT-AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTC-AGT
*
1102207 -CTCAAAGAGCAGG--G---CTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCA
64 CCTCAAAGAGCAGGATGCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGAACTTCCTAGTCCTCA
1102266 AAGAGCAGGACGCTCTCTCCTTTCAC
129 AAGAGCAGGACGCTCTCTCCTTTCAC
1102292 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCC
1102357 TCAAAGAGCAGGATGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGAACTTCCTAGTCCTCAA
66 TCAAAGAGCAGGATG-CTTCTCCTTTTAAAGCCCACACAAGTTGGTGGAACTTCCTAGTCCTCAA
1102422 AGAGCAGGACGCTCTCTCCTTTCAC
130 AGAGCAGGACGCTCTCTCCTTTCAC
* *
1102447 CTTTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACC-TTCAGTCC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCC
* * *
1102511 TCAAAGAGCAGGATGCATTCTCCTTTTAAAACCCACACAAGTTTGTGGCACCTT--TAGTCCTCA
66 TCAAAGAGCAGGATGC-TTCTCCTTTTAAAGCCCACACAAGTTGGTGG-AACTTCCTAGTCCTCA
*
1102574 AAGAGCAAGACGC
129 AAGAGCAGGACGC
1102587 CTTTTAAAGC
Statistics
Matches: 275, Mismatches: 11, Indels: 15
0.91 0.04 0.05
Matches are distributed among these distances:
148 2 0.01
149 65 0.24
150 5 0.02
151 1 0.00
153 22 0.08
154 52 0.19
155 128 0.47
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (154 bp):
CCTTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCC
TCAAAGAGCAGGATGCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGAACTTCCTAGTCCTCAAA
GAGCAGGACGCTCTCTCCTTTCAC
Found at i:1102463 original size:100 final size:93
Alignment explanation
Indices: 1102344--1102536 Score: 255
Period size: 94 Copynumber: 2.0 Consensus size: 93
1102334 AAGTTGGTGG
*
1102344 CACCTTTCAGTCCTCAAAGAGCAGGATGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGG-AAC
1 CACCTTTCAGTCCTCAAAGAGCAGGA------CGCCTTTTAAAGCCCACACAAGTTGGTGGCAAC
1102408 TTCCTAGTCCTCAAAGAGCAGGACGC-TCTCTCCTTT
60 TT-C-AGTCCTCAAAGAGCAGGACGCAT-TCTCCTTT
* *
1102444 CACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCAGT
1 CACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCAACTTCAGT
*
1102509 CCTCAAAGAGCAGGATGCATTCTCCTTT
66 CCTCAAAGAGCAGGACGCATTCTCCTTT
1102537 TAAAACCCAC
Statistics
Matches: 87, Mismatches: 4, Indels: 11
0.85 0.04 0.11
Matches are distributed among these distances:
93 28 0.32
94 30 0.34
95 4 0.05
100 25 0.29
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (93 bp):
CACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCAACTTCAGT
CCTCAAAGAGCAGGACGCATTCTCCTTT
Found at i:1102648 original size:55 final size:55
Alignment explanation
Indices: 1102444--1102696 Score: 359
Period size: 55 Copynumber: 4.5 Consensus size: 55
1102434 TCTCTCCTTT
*
1102444 CACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGG
1 CACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGG
* * *
1102499 CACC-TTCAGTCCTCAAAGAGCAGGATGCATTCTCCTTTTAAAACCCACACAAGTTTGTGG
1 CACCTTTCAGTCCTCAAAGAGCA-G--G-A--CGCCTTTTAAAGCCCACACAAGTTGGTGG
*
1102559 CACCTTT-AGTCCTCAAAGAGCAAGACGCCTTTTAAAGCCCACACAAGTTGGTGG
1 CACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGG
* *
1102613 CACCTTTCAGTCCTCAAAGAGCAGGACTCCTTTTAAAGCCCACACAAGTTGATGG
1 CACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGG
1102668 CA-CTTTCTAGTCCTCAAAGAGCAGGACGC
1 CACCTTTC-AGTCCTCAAAGAGCAGGACGC
1102697 TCTCTCCTTT
Statistics
Matches: 177, Mismatches: 12, Indels: 18
0.86 0.06 0.09
Matches are distributed among these distances:
54 55 0.31
55 71 0.40
56 1 0.01
57 2 0.01
58 1 0.01
60 45 0.25
61 2 0.01
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.24
Consensus pattern (55 bp):
CACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGG
Found at i:1102766 original size:263 final size:264
Alignment explanation
Indices: 1102292--1102970 Score: 961
Period size: 263 Copynumber: 2.5 Consensus size: 264
1102282 CTCCTTTCAC
*
1102292 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCC
* *
1102357 TCAAAGAGCAGGATGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGAACTTCCTAGTCCTCAA
66 TCAAAGAGCAGGA---C--CTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCTAGTCCTCAA
* *
1102422 AGAGCAGGACGCTCTCTCCTTTCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCAC
126 AGAGCAGGACGCTCTCTCCTTTCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCAC
*
1102487 ACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGA-TGCATTCTCCTTTTAAAACCCACACAA
191 ACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGACTGC-TTCTCCTTTGAAAACCCACACAA
*
1102551 GTTTGTGGCA
255 GTTGGTGGCA
*
1102561 CCTTTAGTCCTCAAAGAGCAAGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCC
1 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCC
*
1102626 TCAAAGAGCAGGA-CTCCTTTTAAAGCCCACACAAGTTGATGGCACTTTCTAGTCCTCAAAGAGC
66 TCAAAGAGCAGGACCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCTAGTCCTCAAAGAGC
1102690 AGGACGCTCTCTCCTTTCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAG
131 AGGACGCTCTCTCCTTTCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAG
* * *
1102755 TTGAG-GGCACCTTCAGTCCTCAAAGAGTAGGACTTCTTCTCCTTTGAAAGCCCACACAAGTTGG
196 TTG-GTGGCACCTTCAGTCCTCAAAGAGCAGGACTGCTTCTCCTTTGAAAACCCACACAAGTTGG
1102819 TGGCA
260 TGGCA
* * * * *
1102824 CTTTTAAGTCCTCAAAGAGCAGGATGCTTTCTTTTTGCAAATCCCACACTAGTTGGTGGCATCTT
1 CCTTT-AGTCCTCAAAGAGCAGGACGC---C-TTTT--AAAGCCCACACAAGTTGGTGGCACCTT
* * * *
1102889 CCAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGACCACACGAGTTGGTGGCACTTT-TCA
59 TCAGTCCTCAAAGAGCAGGA--CC--TCCTTTT-AAAGCCCACACAAGTTGGTGGCACTTTCT-A
1102953 GTCCTCAAAGAGCAGGAC
118 GTCCTCAAAGAGCAGGAC
1102971 ACACTTCTTT
Statistics
Matches: 371, Mismatches: 23, Indels: 25
0.89 0.05 0.06
Matches are distributed among these distances:
263 174 0.47
264 22 0.06
267 1 0.00
268 4 0.01
269 76 0.20
270 43 0.12
273 1 0.00
275 7 0.02
276 43 0.12
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (264 bp):
CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCC
TCAAAGAGCAGGACCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCTAGTCCTCAAAGAGC
AGGACGCTCTCTCCTTTCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAG
TTGGTGGCACCTTCAGTCCTCAAAGAGCAGGACTGCTTCTCCTTTGAAAACCCACACAAGTTGGT
GGCA
Found at i:1102932 original size:122 final size:121
Alignment explanation
Indices: 1102740--1102969 Score: 327
Period size: 122 Copynumber: 1.9 Consensus size: 121
1102730 GGACGCCTTT
* ** *
1102740 CAAAGCCCACACAAGTTGAGGGCACCTTCAGTCCTCAAAGAGTAGGACTTCTTCTCCTTTGAAAG
1 CAAAGCCCACACAAGTTGAGGGCACCTTCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTCAAAG
*
1102805 CCCACACAAGTTGGTGGCACTTTTAAGTCCTCAAAGAGCAGGATGCTTTCTTTTTG
66 ACCACACAAGTTGGTGGCACTTTTAAGTCCTCAAAGAGCAGGATGCTTTCTTTTTG
* * * * *
1102861 CAAATCCCACACTAGTTG-GTGGCATCTTCCAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAA
1 CAAAGCCCACACAAGTTGAG-GGCACCTT-CAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTCAA
* *
1102925 AGACCACACGAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGA
64 AGACCACACAAGTTGGTGGCACTTTTAAGTCCTCAAAGAGCAGGA
1102970 CACACTTCTT
Statistics
Matches: 95, Mismatches: 12, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
120 1 0.01
121 23 0.24
122 71 0.75
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.26
Consensus pattern (121 bp):
CAAAGCCCACACAAGTTGAGGGCACCTTCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTCAAAG
ACCACACAAGTTGGTGGCACTTTTAAGTCCTCAAAGAGCAGGATGCTTTCTTTTTG
Found at i:1102970 original size:61 final size:59
Alignment explanation
Indices: 1102715--1102970 Score: 283
Period size: 61 Copynumber: 4.3 Consensus size: 59
1102705 TTCACCCTTT
*
1102715 AGTCCTCAAAGAGCAGGACGC---C-TTTCAAAGCCCACACAAGTTGAG-GGCAC-CTTC
1 AGTCCTCAAAGAGCAGGACGCTTTCTTTTCAAAGCCCACACAAGTTG-GTGGCACTTTTC
* * * * *
1102769 AGTCCTCAAAGAGTAGGACTTCTTCTCCTTTGAAAGCCCACACAAGTTGGTGGCACTTTTA
1 AGTCCTCAAAGAGCAGGAC-GCTT-TCTTTTCAAAGCCCACACAAGTTGGTGGCACTTTTC
* * * *
1102830 AGTCCTCAAAGAGCAGGATGCTTTCTTTTTGCAAATCCCACACTAGTTGGTGGCA-TCTTCC
1 AGTCCTCAAAGAGCAGGACGCTTTC-TTTT-CAAAGCCCACACAAGTTGGTGGCACT-TTTC
* *
1102891 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGACCACACGAGTTGGTGGCACTTTTC
1 AGTCCTCAAAGAGCAGGACG-C-TTTCTTTTCAAAGCCCACACAAGTTGGTGGCACTTTTC
1102952 AGTCCTCAAAGAGCAGGAC
1 AGTCCTCAAAGAGCAGGAC
1102971 ACACTTCTTT
Statistics
Matches: 169, Mismatches: 19, Indels: 21
0.81 0.09 0.10
Matches are distributed among these distances:
54 18 0.11
55 1 0.01
59 4 0.02
60 32 0.19
61 104 0.62
62 6 0.04
63 4 0.02
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (59 bp):
AGTCCTCAAAGAGCAGGACGCTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACTTTTC
Found at i:1103034 original size:45 final size:42
Alignment explanation
Indices: 1102953--1103056 Score: 120
Period size: 45 Copynumber: 2.4 Consensus size: 42
1102943 GCACTTTTCA
*
1102953 GTCCTCAAAGAGCAGGACACACTTCTTTCCCTTCTTTTCTCTTTT
1 GTCCTCAAAGAGCAGGACACACTTATTTCCCTTC--TT-TCTTTT
* *
1102998 GTCCTCAAAGAGCAGGACGCACTTTATTTTCC-TCTTTCTTTT
1 GTCCTCAAAGAGCAGGACACAC-TTATTTCCCTTCTTTCTTTT
* *
1103040 GTCCTTAGAGAGCAGGA
1 GTCCTCAAAGAGCAGGA
1103057 AGTATTTCGT
Statistics
Matches: 53, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
42 21 0.40
43 2 0.04
45 23 0.43
46 7 0.13
ACGTcount: A:0.20, C:0.27, G:0.16, T:0.37
Consensus pattern (42 bp):
GTCCTCAAAGAGCAGGACACACTTATTTCCCTTCTTTCTTTT
Found at i:1103070 original size:42 final size:43
Alignment explanation
Indices: 1102953--1103088 Score: 118
Period size: 42 Copynumber: 3.1 Consensus size: 43
1102943 GCACTTTTCA
* *
1102953 GTCCTCAAAGAGCAGGACA-CAC-TTCTTTCCCTTCTTTTCTCTTTT
1 GTCCTCAAAGAGCAGGA-AGCACTTTATTTTCCTTC--TT-TCTTTT
*
1102998 GTCCTCAAAGAGCAGGACGCACTTTATTTTCC-TCTTTCTTTT
1 GTCCTCAAAGAGCAGGAAGCACTTTATTTTCCTTCTTTCTTTT
* * * * * *
1103040 GTCCTTAGAGAGCAGGAAGTA-TTTCGTTTTCCTTTTTTCCTTT
1 GTCCTCAAAGAGCAGGAAGCACTTT-ATTTTCCTTCTTTCTTTT
1103083 GTCCTC
1 GTCCTC
1103089 GAAAAATGAG
Statistics
Matches: 76, Mismatches: 11, Indels: 10
0.78 0.11 0.10
Matches are distributed among these distances:
41 3 0.04
42 29 0.38
43 15 0.20
45 22 0.29
46 7 0.09
ACGTcount: A:0.17, C:0.26, G:0.15, T:0.42
Consensus pattern (43 bp):
GTCCTCAAAGAGCAGGAAGCACTTTATTTTCCTTCTTTCTTTT
Found at i:1103135 original size:120 final size:117
Alignment explanation
Indices: 1102995--1103211 Score: 253
Period size: 120 Copynumber: 1.8 Consensus size: 117
1102985 TCTTTTCTCT
* *
1102995 TTTGTCCTCAAAGAGCAGGACGCACTTT-ATTTTCCTC-TTTCTTTTGTCCT-TAGAGAGCAGGA
1 TTTGTCCTCAAAGAGCAGGA--CACTTTCATTTTCCTCTTTTCCTTTGTCCTCAAG-GAGCAGGA
* * * *
1103057 AGTATTTCGTTTTCCTTTTTTCCTTTGTCCTCGAAAAATGAGACGTACTCTTTTTCAC
63 ACTATTTCATTCT-C-TTTTT-CTTTGTCCTCAAAAAATGAGACGTACTCTTTTTCAC
* * * *
1103115 TTTGTCCTC-AAGAAGTAGGACACTTTCCTTTTCTTCTTTTCCTTTGTCCTCAAGGAGCAGGACC
1 TTTGTCCTCAAAG-AGCAGGACACTTTCATTTTCCTCTTTTCCTTTGTCCTCAAGGAGCAGGAAC
1103179 TATTTCATTCTCTTTTTCTTTGTCCTCAAAAAA
65 TATTTCATTCTCTTTTTCTTTGTCCTCAAAAAA
1103212 GTGGGACACC
Statistics
Matches: 83, Mismatches: 10, Indels: 11
0.80 0.10 0.11
Matches are distributed among these distances:
117 15 0.18
118 11 0.13
119 11 0.13
120 44 0.53
121 2 0.02
ACGTcount: A:0.20, C:0.24, G:0.14, T:0.42
Consensus pattern (117 bp):
TTTGTCCTCAAAGAGCAGGACACTTTCATTTTCCTCTTTTCCTTTGTCCTCAAGGAGCAGGAACT
ATTTCATTCTCTTTTTCTTTGTCCTCAAAAAATGAGACGTACTCTTTTTCAC
Found at i:1103204 original size:40 final size:41
Alignment explanation
Indices: 1103104--1103207 Score: 113
Period size: 42 Copynumber: 2.5 Consensus size: 41
1103094 ATGAGACGTA
* *
1103104 CTCTTTTTCACTTTGTCCTCAAGAAGTAGGACACTTTCCTTTT
1 CTCTTTTT--CTTTGTCCTCAAGAAGCAGGACACTTTCCTATT
* * *
1103147 CTTCTTTTCCTTTGTCCTCAAGGAGCAGGAC-CTATTTC-ATT
1 C-TCTTTTTCTTTGTCCTCAAGAAGCAGGACACT-TTCCTATT
1103188 CTCTTTTTCTTTGTCCTCAA
1 CTCTTTTTCTTTGTCCTCAA
1103208 AAAAGTGGGA
Statistics
Matches: 53, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
40 18 0.34
41 5 0.09
42 23 0.43
43 1 0.02
44 6 0.11
ACGTcount: A:0.16, C:0.27, G:0.12, T:0.45
Consensus pattern (41 bp):
CTCTTTTTCTTTGTCCTCAAGAAGCAGGACACTTTCCTATT
Found at i:1103708 original size:35 final size:35
Alignment explanation
Indices: 1103667--1104011 Score: 654
Period size: 35 Copynumber: 9.9 Consensus size: 35
1103657 AATAATAATA
1103667 ATAAAAATGAAGGCATGGAATGATGGGCATGGAAT
1 ATAAAAATGAAGGCATGGAATGATGGGCATGGAAT
1103702 ATAAAAATGAAGGCATGGAATGATGGGCATGGAAT
1 ATAAAAATGAAGGCATGGAATGATGGGCATGGAAT
*
1103737 ATAAAAATGAAGGCATGGAATGATGGGCATAGAAT
1 ATAAAAATGAAGGCATGGAATGATGGGCATGGAAT
1103772 ATAAAAATGAAGGCATGGAATGATGGGCATGGAAT
1 ATAAAAATGAAGGCATGGAATGATGGGCATGGAAT
1103807 ATAAAAATGAAGGCATGGAATGATGGGCATGGAAT
1 ATAAAAATGAAGGCATGGAATGATGGGCATGGAAT
1103842 ATAAAAATGAAGGCATGGAATGATGGGCATGGAAT
1 ATAAAAATGAAGGCATGGAATGATGGGCATGGAAT
*
1103877 ATAAAAATGGAGGCATGGAATGATGGGCATGGAAT
1 ATAAAAATGAAGGCATGGAATGATGGGCATGGAAT
1103912 ATAAAAATGAAGGCATGGAATGATGGGCATGGAAT
1 ATAAAAATGAAGGCATGGAATGATGGGCATGGAAT
* *
1103947 ATAAAAATGGAGGCATGGAATGATGGGCATCGAAT
1 ATAAAAATGAAGGCATGGAATGATGGGCATGGAAT
1103982 ATAAAAATGAAGGCATGGAATGATGGGCAT
1 ATAAAAATGAAGGCATGGAATGATGGGCAT
1104012 AAAAAATGAA
Statistics
Matches: 303, Mismatches: 7, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
35 303 1.00
ACGTcount: A:0.43, C:0.06, G:0.31, T:0.20
Consensus pattern (35 bp):
ATAAAAATGAAGGCATGGAATGATGGGCATGGAAT
Found at i:1105539 original size:79 final size:79
Alignment explanation
Indices: 1105408--1106073 Score: 989
Period size: 79 Copynumber: 8.4 Consensus size: 79
1105398 TTTTATTTTC
* * **
1105408 TCAATTTTTCACAATTGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTTTAACCCCGGTT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
1105473 TTATTTCTAAAACA
66 TTATTTCTAAAACA
*
1105487 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCTACCCCGGTT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
*
1105552 TTATCTCTAAAACA
66 TTATTTCTAAAACA
*
1105566 TCATTTTTTCATAATCGGGGATACTCCAACCCCG-T-TTTTCTGAGGGGATACTCCAACCCCGGT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTC-GAGGGGATACTCCAACCCCGGT
*
1105629 TTTATCTCTAAAACA
65 TTTATTTCTAAAACA
*
1105644 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAAGGGATACTCCAACCCCGGTT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
*
1105709 TTATCTCTAAAACA
66 TTATTTCTAAAACA
* *
1105723 TCAATTTTTCATAATCGGAGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
1105788 TTATTTCTAAAACA
66 TTATTTCTAAAACA
* * *
1105802 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAGCCCCAGTT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
1105867 TTATTTCTAAAACA
66 TTATTTCTAAAACA
* * * * *
1105881 TCAATTTTTCATAATCGGGGATACTCCAACCCCATTATTTCCGAGGGGATACTCCAACTCTGATT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
* *
1105946 TTAGTTCCAAAACA
66 TTATTTCTAAAACA
* * *
1105960 -CTAATTTCTCACAATCGGGGATACTCCAACCCCGTTATTTTC-ACGGGGATACTCTAACCCCGG
1 TC-AATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGA-GGGGATACTCCAACCCCGG
** *
1106023 CCCTTATTTCTAAAGCA
64 -TTTTATTTCTAAAACA
* *
1106040 TCAATTTTTTTATAATCGGGGATACTCTAACCCC
1 TCAA-TTTTTCATAATCGGGGATACTCCAACCCC
1106074 AATTTTATTT
Statistics
Matches: 537, Mismatches: 42, Indels: 14
0.91 0.07 0.02
Matches are distributed among these distances:
77 5 0.01
78 72 0.13
79 416 0.77
80 18 0.03
81 26 0.05
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.32
Consensus pattern (79 bp):
TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
TTATTTCTAAAACA
Found at i:1105821 original size:236 final size:236
Alignment explanation
Indices: 1105408--1106073 Score: 996
Period size: 236 Copynumber: 2.8 Consensus size: 236
1105398 TTTTATTTTC
* * **
1105408 TCAATTTTTCACAATTGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTTTAACCCCGGTT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
1105473 TTATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATA
66 TTA-TTCTAAAACATCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATA
* * *
1105538 CTCCTACCCCGGTTTTATCTCTAAAACATCATTTTTTCATAATCGGGGATACTCCAACCCCGTT-
130 CTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCAACCCCGTTA
* *
1105602 TTTCTGAGGGGATACTCCAACCCCGGTTTTATCTCTAAAACA
195 TTTCCGAGGGGATACTCCAACCCCAGTTTTATCTCTAAAACA
*
1105644 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAAGGGATACTCCAACCCCGGTT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
* *
1105709 TTATCTCTAAAACATCAATTTTTCATAATCGGAGATACTCCAACCCCGTTATTTCCGAGGGGATA
66 TTAT-TCTAAAACATCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATA
1105774 CTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCAACCCCGTTA
130 CTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCAACCCCGTTA
* *
1105839 TTTCCGAGGGGATACTCCAGCCCCAGTTTTATTTCTAAAACA
195 TTTCCGAGGGGATACTCCAACCCCAGTTTTATCTCTAAAACA
* * * * *
1105881 TCAATTTTTCATAATCGGGGATACTCCAACCCCATTATTTCCGAGGGGATACTCCAACTCTGATT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
* * *
1105946 TTAGTTCCAAAACA-CTAATTTCTCACAATCGGGGATACTCCAACCCCGTTATTTTC-ACGGGGA
66 TTA-TTCTAAAACATC-AATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGA-GGGGA
* ** * * *
1106009 TACTCTAACCCCGGCCCTTATTTCTAAAGCATCAATTTTTTTATAATCGGGGATACTCTAACCCC
128 TACTCCAACCCCGG-TTTTATTTCTAAAACATCAA-TTTTTCATAATCGGGGATACTCCAACCCC
1106074 AATTTTATTT
Statistics
Matches: 392, Mismatches: 31, Indels: 11
0.90 0.07 0.03
Matches are distributed among these distances:
235 1 0.00
236 184 0.47
237 162 0.41
238 18 0.05
239 27 0.07
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.32
Consensus pattern (236 bp):
TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
TTATTCTAAAACATCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATAC
TCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCAACCCCGTTAT
TTCCGAGGGGATACTCCAACCCCAGTTTTATCTCTAAAACA
Found at i:1110240 original size:15 final size:16
Alignment explanation
Indices: 1110220--1110249 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
1110210 TAAAGGATAG
1110220 GAGATG-ACACCTATC
1 GAGATGAACACCTATC
1110235 GAGATGAACACCTAT
1 GAGATGAACACCTAT
1110250 GAGTCCCTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.37, C:0.23, G:0.20, T:0.20
Consensus pattern (16 bp):
GAGATGAACACCTATC
Found at i:1112841 original size:42 final size:42
Alignment explanation
Indices: 1112787--1112880 Score: 118
Period size: 42 Copynumber: 2.2 Consensus size: 42
1112777 CTCAACCTTG
* * *
1112787 GAGACTTCTTCATCTTTTGTCTGCTTGTCGG-TTCAGACCCGA
1 GAGACTTCTTCATCTTTCGTCTGCTCGCCGGCTT-AGACCCGA
* * *
1112829 GAGACTTTTTCATCTTTCGTTTGCTCGCCGGCTTAGACTCGA
1 GAGACTTCTTCATCTTTCGTCTGCTCGCCGGCTTAGACCCGA
1112871 GAGACTTCTT
1 GAGACTTCTT
1112881 TATCCATTGT
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
42 42 0.95
43 2 0.05
ACGTcount: A:0.15, C:0.26, G:0.21, T:0.38
Consensus pattern (42 bp):
GAGACTTCTTCATCTTTCGTCTGCTCGCCGGCTTAGACCCGA
Found at i:1112918 original size:42 final size:43
Alignment explanation
Indices: 1112872--1112965 Score: 111
Period size: 43 Copynumber: 2.2 Consensus size: 43
1112862 TAGACTCGAG
* * * **
1112872 AGACTTCTTTATCCATTGTCTACCCGTTAGCTCAGTCTC-GGA
1 AGACTTCTTTATCAATCGTCTACCCGTCAGCTCAAACTCGGGA
*
1112914 AGACTTTCTTTATTAATCGTCTACCCGTCAGCTCAAACTCGGGA
1 AGAC-TTCTTTATCAATCGTCTACCCGTCAGCTCAAACTCGGGA
1112958 A-ACTTCTT
1 AGACTTCTT
1112966 CATCTTTTTA
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
42 9 0.20
43 31 0.70
44 4 0.09
ACGTcount: A:0.22, C:0.28, G:0.15, T:0.35
Consensus pattern (43 bp):
AGACTTCTTTATCAATCGTCTACCCGTCAGCTCAAACTCGGGA
Found at i:1113635 original size:17 final size:17
Alignment explanation
Indices: 1113601--1113634 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
1113591 TACCACAAAG
1113601 TATCAATTGATGAATTT
1 TATCAATTGATGAATTT
*
1113618 TATCAATT-TTGAATTT
1 TATCAATTGATGAATTT
1113634 T
1 T
1113635 TCACGGTAGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.32, C:0.06, G:0.09, T:0.53
Consensus pattern (17 bp):
TATCAATTGATGAATTT
Found at i:1114176 original size:163 final size:160
Alignment explanation
Indices: 1113987--1114525 Score: 502
Period size: 163 Copynumber: 3.3 Consensus size: 160
1113977 TTTCTTCTTT
* *
1113987 GTAAATTTTTTTG-GGAGGATTTTTCTTAATTTTTAATTTTTAAAATTCATCAAATCTTTTTATT
1 GTAAA-TTTTTTGAGG-GGATTTTTCTTAGTTTTTAATTTTTAAAATTCATCAAATATTTTTATT
* *
1114051 TATTTCACATTAATTCAGTTTTTAAAAATTCATTCATTTTCATGAGTTTTCGATTTTTTTTTAAA
64 TATTTCATATTAATTCAGTTTTAAAAAATT-ATTCATTTTCATGAGTTTTCGATTTTTTTTTAAA
* *
1114116 ATTTCTATTTTTTTTGAAATATGATG-TTTT-CTCC
128 A--TCT-TTTTTTTTAAAATACGATGTTTTTACTCC
*
1114150 GTAAATTTTTTCGAGGGGAGTTTTCTTAGTTTTTAATTTTTAAAATTCATCAAATATTTTTATTT
1 GTAAATTTTTT-GAGGGGATTTTTCTTAGTTTTTAATTTTTAAAATTCATCAAATATTTTTATTT
* * * *
1114215 ATTTTATATTAATTCA-TTTTCAAAAATTAGTTCATTTTCATGAGTTTTTGAATTTTTTTCTTGA
65 ATTTCATATTAATTCAGTTTTAAAAAATTA-TTCATTTTCATGAGTTTTCG-ATTTTTTT-TTAA
* **
1114279 AATCTTTTTTTTTAAAATACGGTGTTTTTTACTTT
127 AATCTTTTTTTTTAAAATACGATG-TTTTTACTCC
** * * * ** *
1114314 GTAAATTTTGTTGA-AAGATTTTTCTTGGTTTTCAATTTTTAAAATTTATCAAATATCATCATTT
1 GTAAATTTT-TTGAGGGGATTTTTCTTAGTTTTTAATTTTTAAAATTCATCAAATATTTTTATTT
* * * * *
1114378 GA-TTCATATTAGTTCAGTTTAAAAAAAAGTAATTCATTTTCATGGGTTTTGGATTTTTTTTATT
65 -ATTTCATATTAATTCAGTTT-TAAAAAA-TTATTCATTTTCATGAGTTTTCGA-TTTTTTT-TT
* *
1114442 GAAA-CTTCCCTTTTTTTAAGAA-ACCGA-GTTTTCTTCTCC
125 AAAATCTT---TTTTTTTAA-AATA-CGATGTTTT-TACTCC
* * **
1114481 GTAAATTTTTTCGAGGGGTTTTTTCTTGGTTTAGAATTTTTAAAA
1 GTAAATTTTTT-GAGGGGATTTTTCTTAGTTTTTAATTTTTAAAA
1114526 CATATCTAAT
Statistics
Matches: 315, Mismatches: 39, Indels: 39
0.80 0.10 0.10
Matches are distributed among these distances:
161 17 0.05
162 39 0.12
163 131 0.42
164 28 0.09
165 38 0.12
166 8 0.03
167 25 0.08
168 29 0.09
ACGTcount: A:0.27, C:0.09, G:0.11, T:0.53
Consensus pattern (160 bp):
GTAAATTTTTTGAGGGGATTTTTCTTAGTTTTTAATTTTTAAAATTCATCAAATATTTTTATTTA
TTTCATATTAATTCAGTTTTAAAAAATTATTCATTTTCATGAGTTTTCGATTTTTTTTTAAAATC
TTTTTTTTTAAAATACGATGTTTTTACTCC
Found at i:1114569 original size:331 final size:329
Alignment explanation
Indices: 1113954--1114603 Score: 688
Period size: 331 Copynumber: 2.0 Consensus size: 329
1113944 TTACCGAATT
* * * *
1113954 TTTTTATTTTCAAATTACGGGGTTTTCTTCTTTGTAAATTTTTTTGGGAGGATTTTTCTTAATTT
1 TTTTTATTTTCAAAATACGGGGTTTTCTTCTTTGTAAATTTTGTTGGAAAGATTTTTCTTAATTT
* * ** * ** * *
1114019 TTAATTTTTAAAATTCATCAAATCTTTTTATTTATTTCACATTAATTCAGTTTTTAAAAATTCAT
66 TCAATTTTTAAAATTCATCAAATATCATCATTTATTTCACATTAATTCAGTTTAAAAAAAGTAAT
* * * *
1114084 TCATTTTCATGAGTTTTCGATTTTTTTTTAAAATTTCTATTTTTTTTGAAATATGATGTTTTCTC
131 TCATTTTCATGAGTTTTCGATTTTTTTTTAAAACTTCCATTTTTTTAGAAATACGATGTTTTCTC
** * **
1114149 CGTAAATTTTTTCGAGGGGAGTTTTCTTAGTTTTTAATTTTTAAAATTCATCAAATATTTTTATT
196 CGTAAATTTTTTCGAGGGGAGTTTTCTTAGTTTAGAATTTTTAAAAATCATCAAATATCATTATT
** * * * * * * *
1114214 TATTTTATATTAATTCATTTTC-AAAAA-TTAGTTCATTTTCATGAGTTTTTGAATTTTTTTCTT
261 TAACTCACATAAAATCAGTTTCAAAAAATTTAATTCA-TTTCATGA-ATTTTGAATTTTTTTCTT
1114277 GAAATC
324 GAAATC
* **
1114283 TTTTT-TTTT-AAAATACGGTGTTTT-TTACTTTGTAAATTTTGTT-GAAAGATTTTTCTTGGTT
1 TTTTTATTTTCAAAATACGGGGTTTTCTT-CTTTGTAAATTTTGTTGGAAAGATTTTTCTTAATT
* * *
1114344 TTCAATTTTTAAAATTTATCAAATATCATCATTTGA-TTCATATTAGTTCAGTTTAAAAAAAAGT
65 TTCAATTTTTAAAATTCATCAAATATCATCATTT-ATTTCACATTAATTCAGTTT-AAAAAAAGT
* * * * * *
1114408 AATTCATTTTCATGGGTTTTGGATTTTTTTTATTGAAACTTCCCTTTTTTTAAGAAA-CCGAGTT
128 AATTCATTTTCATGAGTTTTCGA-TTTTTTT-TTAAAACTTCCATTTTTTT-AGAAATACGA-TG
** * *
1114472 TTCTTCTCCGTAAATTTTTTCGAGGGGTTTTTTCTTGGTTTAGAATTTTTAAAACAT-ATCTAAT
189 TT-TTCTCCGTAAATTTTTTCGAGGGGAGTTTTCTTAGTTTAGAATTTTTAAAA-ATCATCAAAT
* * *
1114536 GTCATTATTTAACTCCCATAAAATCAGTTTCAAAAAATTTAATTTATTTCATGAATTTTGAATTT
252 ATCATTATTTAACTCACATAAAATCAGTTTCAAAAAATTTAATTCATTTCATGAATTTTGAATTT
1114601 TTT
317 TTT
1114604 CGTATAAATT
Statistics
Matches: 260, Mismatches: 50, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
326 60 0.23
327 55 0.21
328 11 0.04
329 22 0.08
330 7 0.03
331 85 0.33
332 14 0.05
333 6 0.02
ACGTcount: A:0.28, C:0.10, G:0.10, T:0.53
Consensus pattern (329 bp):
TTTTTATTTTCAAAATACGGGGTTTTCTTCTTTGTAAATTTTGTTGGAAAGATTTTTCTTAATTT
TCAATTTTTAAAATTCATCAAATATCATCATTTATTTCACATTAATTCAGTTTAAAAAAAGTAAT
TCATTTTCATGAGTTTTCGATTTTTTTTTAAAACTTCCATTTTTTTAGAAATACGATGTTTTCTC
CGTAAATTTTTTCGAGGGGAGTTTTCTTAGTTTAGAATTTTTAAAAATCATCAAATATCATTATT
TAACTCACATAAAATCAGTTTCAAAAAATTTAATTCATTTCATGAATTTTGAATTTTTTTCTTGA
AATC
Found at i:1114928 original size:11 final size:11
Alignment explanation
Indices: 1114883--1114930 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
1114873 CTCATCTAGC
* *
1114883 AAAAGGAGAAG
1 AAAAAGAGAAA
1114894 AAAAAGAGAAA
1 AAAAAGAGAAA
*
1114905 GAAATGAGAGAAA
1 -AAA-AAGAGAAA
1114918 AAAAAGAGAAA
1 AAAAAGAGAAA
1114929 AA
1 AA
1114931 TAGTGAAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
11 18 0.58
12 6 0.19
13 7 0.23
ACGTcount: A:0.73, C:0.00, G:0.25, T:0.02
Consensus pattern (11 bp):
AAAAAGAGAAA
Found at i:1114931 original size:22 final size:23
Alignment explanation
Indices: 1114888--1114940 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 23
1114878 CTAGCAAAAG
*
1114888 GAGAAGAAAAAGAGAAAGAAATGA
1 GAGAAAAAAAAGAGAAAGAAAT-A
1114912 GAGAAAAAAAAGAG-AA-AAATA
1 GAGAAAAAAAAGAGAAAGAAATA
*
1114933 GTGAAAAA
1 GAGAAAAA
1114941 CCAAGCTAGT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
21 8 0.30
22 4 0.15
23 2 0.07
24 13 0.48
ACGTcount: A:0.70, C:0.00, G:0.25, T:0.06
Consensus pattern (23 bp):
GAGAAAAAAAAGAGAAAGAAATA
Found at i:1116120 original size:129 final size:129
Alignment explanation
Indices: 1115877--1116111 Score: 355
Period size: 129 Copynumber: 1.8 Consensus size: 129
1115867 AATTACAACG
* * *
1115877 AATATTAATCATTTTTAATCTTTTATATTCCTATGGGTATTCGTAGGGGTATAAAAGATTTTGAA
1 AATATTAATCATTTTTAATCTTTTATATTCCTATGGGTATCCGTAAGGGTATAAAAGATTTTCAA
* * *
1115942 AAACTTTTCATATTTTTTCGAGTATCTATTAAGGTATGAAATAATCTTTTTCCAAACATAAATA
66 AAACTTTTCATATCTTTGCGAGTATCTATTAAGGTACGAAATAATCTTTTTCCAAACATAAATA
* *
1116006 AATATTAATCATTTTTAATTTTTTATATTCCTATGTGTATCCGTAAGGGTATAAAAGA-TTTCAA
1 AATATTAATCATTTTTAATCTTTTATATTCCTATGGGTATCCGTAAGGGTATAAAAGATTTTCAA
* * * *
1116070 AAGCTTTTCGTATCTTTGCGGGTTTCTATTAAGGTACGAAAT
66 AAACTTTTCATATCTTTGCGAGTATCTATTAAGGTACGAAAT
1116112 GACACTTTTG
Statistics
Matches: 94, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
128 40 0.43
129 54 0.57
ACGTcount: A:0.33, C:0.11, G:0.13, T:0.43
Consensus pattern (129 bp):
AATATTAATCATTTTTAATCTTTTATATTCCTATGGGTATCCGTAAGGGTATAAAAGATTTTCAA
AAACTTTTCATATCTTTGCGAGTATCTATTAAGGTACGAAATAATCTTTTTCCAAACATAAATA
Found at i:1120450 original size:7 final size:8
Alignment explanation
Indices: 1120426--1120452 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
1120416 GAAAACCCAC
1120426 TTTGATTT
1 TTTGATTT
1120434 TTTGATTT
1 TTTGATTT
1120442 TTTGATTT
1 TTTGATTT
1120450 TTT
1 TTT
1120453 TATGCTTTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.11, C:0.00, G:0.11, T:0.78
Consensus pattern (8 bp):
TTTGATTT
Found at i:1121241 original size:28 final size:28
Alignment explanation
Indices: 1121204--1122916 Score: 822
Period size: 28 Copynumber: 58.5 Consensus size: 28
1121194 TATCAACTTG
*
1121204 TGTGGGCTTTGAAAGGATACCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
1121232 TGTGGGCTTTGAAAAGATGGCAC-GTACT
1 TGTGGGCTTTGAAAGGATGCCACTG-ACT
* * *
1121260 TGTGGGCTTTAAAAGGGTGCTACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
1121288 TGCGGGCTTTTGAAAAAATTGAAAGGATACCACTAACT
1 TGTGGGC---T-------TTGAAAGGATGCCACTGACT
* * *
1121326 TGTGGGCTTTGGAAGGGTGCCACTGATT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
1121354 TTTGGGGTTTTGCAAGGGTGCCACT-AGCT
1 TGT-GGGCTTTGAAAGGATGCCACTGA-CT
* *
1121383 TGTGGGCTTTTGAAAGGATTGAAAGAATACTACTAACT
1 TGTGGGC-TTTGAAAGGA-T----G----CCACTGACT
* * * *
1121421 TGTGGGTTTTGAAAGGGTGCCATTGATT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
1121449 TATGGGCTTTTGAAAGGGTGTCACTAACT
1 TGTGGGC-TTTGAAAGGATGCCACTGACT
* *
1121478 TGTGGGCTTTGAAAAGGGTGCCACTAACT
1 TGTGGGCTTTG-AAAGGATGCCACTGACT
** * * *
1121507 TGTAAGCTTTAAAAAGGTTGCCATTGACT
1 TGTGGGCTTT-GAAAGGATGCCACTGACT
* *
1121536 TGTGGGCTTTGAAAAGATGCAACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
1121564 TGTGGGCTTTGAAAAGAGTTGCCACTGACT
1 TGTGGGCTTTG-AAAG-GATGCCACTGACT
*
1121594 TGTGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
1121622 TATGAGCTTTGAGAAGG-TGCCACTAACT
1 TGTGGGCTTTGA-AAGGATGCCACTGACT
*** * *
1121650 TGTGGGCTTTGAAAATTTGTCACTGGCT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
1121678 TGTGGGCTTTAAAAAGAAGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
1121706 TGTGGGCTTTAAAAAGAAGCCACT-AGCT
1 TGTGGGCTTTGAAAGGATGCCACTGA-CT
* * * * *
1121734 TGTGTGCTGATGCAAGGTTAGCAAC--A-T
1 TGTGGGCT-TTGAAAGGAT-GCCACTGACT
* * * *
1121761 TGT--G-TTTAGAAGGGTTGCTA-TCAACTT
1 TGTGGGCTTT-GAAAGGATGCCACT-GAC-T
* *
1121788 GTGTGGGCTTTGAAAGGATACCACTGAGT
1 -TGTGGGCTTTGAAAGGATGCCACTGACT
*
1121817 TGTGGGCTTTGAAAAGATGCCACAT-ACT
1 TGTGGGCTTTGAAAGGATGCCAC-TGACT
* * *
1121845 TGTGGGCTTTAAAAGGGTGCTACT-ACCT
1 TGTGGGCTTTGAAAGGATGCCACTGA-CT
* * *
1121873 TGCGGGCTTTTGAAAAGATTGAAAGGATACCACTAACT
1 TGTGGGC---T-------TTGAAAGGATGCCACTGACT
* * *
1121911 TGTGGGCTTTGGAAGGGTGCCACTGATT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
1121939 TGTGGGCTTTTGAAAGGGTGCCACT-AGCT
1 TGTGGGC-TTTGAAAGGATGCCACTGA-CT
* * *
1121968 TGTGGGCTTTTGAAAGGATTGAAAGAATACTATTAACT
1 TGTGGGC-TTTGAAAGGA-T----G----CCACTGACT
* * *
1122006 TGTGGGTTTTGAAAGGGTGCCACTGATT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
1122034 TATGGGCTTTTGAAAGGGTGTCACTAACT
1 TGTGGGC-TTTGAAAGGATGCCACTGACT
* *
1122063 TGTTGGCTTTGAAAAGGGTGCCACTGACT
1 TGTGGGCTTTG-AAAGGATGCCACTGACT
* * * *
1122092 TGTAGGCTTTAAAAAGGTTGCCATTGACT
1 TGTGGGCTTT-GAAAGGATGCCACTGACT
*
1122121 TGTGGGCTTTGAAAGGATGCAACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
1122149 TGTGGGCTTCGAAAATAGTTGCCACTAACT
1 TGTGGGCTTTG-AAA-GGATGCCACTGACT
* *
1122179 TGTGGGCTTTGAAAAGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
1122207 TATGAGCTTTGAGAAGG-TGCCACTGACT
1 TGTGGGCTTTGA-AAGGATGCCACTGACT
* *
1122235 TGTGGGCTTTGAAAATG-TGTCACT-AGCT
1 TGTGGGCTTTG-AAAGGATGCCACTGA-CT
* *
1122263 TGTGGGCTTT-AAAAGAAGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
1122290 TATGGGCTTTAAAAAGAAGCCACTGGCT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
1122318 TGTGTGCTGATGCAAGGTTAGCAAC--A-T
1 TGTGGGCT-TTGAAAGGAT-GCCACTGACT
* * * *
1122345 TGT--G-TTTAGAAGGGTTGCTA-TCAACTT
1 TGTGGGCTTT-GAAAGGATGCCACT-GAC-T
* *
1122372 GTGTGGGCTTTGAAAGGATACCATTGACT
1 -TGTGGGCTTTGAAAGGATGCCACTGACT
*
1122401 TGTGGGCTTTGAAAAGATGCCACAT-ACT
1 TGTGGGCTTTGAAAGGATGCCAC-TGACT
* * *
1122429 TGTGGGCTTTAAAAGGGTGCTACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
1122457 TGCGGGCTTTTGAAAGGATTGAAAGGATACCACTAACT
1 TGTGGGC-TTTGAAAGGA-T-----G---CCACTGACT
* * *
1122495 TGTGGGCTTTGGAAGGGTGCCACTGATT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
1122523 TGTGGGCTTTTGAAAGGGTGGCACT-AGTT
1 TGTGGGC-TTTGAAAGGATGCCACTGA-CT
* * *
1122552 TGTCGGCTTTTGAAAGGATTGAAAGAATACTACTAACT
1 TGTGGGC-TTTGAAAGGA-T----G----CCACTGACT
* * *
1122590 TGTGGGTTTTGAAAGGGTGCCACTGATT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
1122618 TATGGGCTTTTGAAAGGGTGTCACTAACT
1 TGTGGGC-TTTGAAAGGATGCCACTGACT
*
1122647 TGTGGGCTTTGAAAAGGGTGCCACTGACT
1 TGTGGGCTTTG-AAAGGATGCCACTGACT
* * * *
1122676 TGTAGGCTTTAAAAAGGTTGCCATTGACT
1 TGTGGGCTTT-GAAAGGATGCCACTGACT
*
1122705 TGTGGGCTTTGAAAGGATGCAACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
1122733 TGTGGGCTTTGAAAAGAGTTGCCACTGACT
1 TGTGGGCTTTG-AAAG-GATGCCACTGACT
* *
1122763 TGTGGGCTTTGAAAAGATACCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* **
1122791 TATGAACTTTGAGAAGG-TGCCACTGACT
1 TGTGGGCTTTGA-AAGGATGCCACTGACT
* * *
1122819 TGTGGGCTTTGAAAATG-TGTCACTGGCT
1 TGTGGGCTTTG-AAAGGATGCCACTGACT
* * *
1122847 TGTGGGCTTT-AAATAGAAGCCATTGACT
1 TGTGGGCTTTGAAA-GGATGCCACTGACT
* * *
1122875 TGTGGGCTTTAAAAAGAAGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
1122903 TGTGGGCTTTGAAA
1 TGTGGGCTTTGAAA
1122917 AGAAGTCGTA
Statistics
Matches: 1304, Mismatches: 252, Indels: 258
0.72 0.14 0.14
Matches are distributed among these distances:
23 8 0.01
24 14 0.01
25 4 0.00
26 7 0.01
27 35 0.03
28 626 0.48
29 364 0.28
30 97 0.07
31 11 0.01
32 3 0.00
34 3 0.00
35 3 0.00
36 4 0.00
37 35 0.03
38 86 0.07
39 4 0.00
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (28 bp):
TGTGGGCTTTGAAAGGATGCCACTGACT
Found at i:1121388 original size:29 final size:29
Alignment explanation
Indices: 1121306--1121509 Score: 85
Period size: 29 Copynumber: 6.8 Consensus size: 29
1121296 TTTGAAAAAA
* * * *
1121306 TTGAAAGGATACCACTAACTTGT-GGGCT
1 TTGAAAGGGTGCCACTAGCTTGTGGGGTT
* * *
1121334 TTGGAAGGGTGCCACT-GATTTTTGGGGTT
1 TTGAAAGGGTGCCACTAG-CTTGTGGGGTT
* *
1121363 TTGCAAGGGTGCCACTAGCTTGTGGGCTT
1 TTGAAAGGGTGCCACTAGCTTGTGGGGTT
* * *
1121392 TTGAAAGGATTGAAAGAATACTACTAACTTGT-GGGTT
1 TTGAAA-G---G---G--TGCCACTAGCTTGTGGGGTT
* * * *
1121429 TTGAAAGGGTGCCA-TTGATTTATGGGCTT
1 TTGAAAGGGTGCCACTAG-CTTGTGGGGTT
* * *
1121458 TTGAAAGGGTGTCACTAACTTGT-GGGCT
1 TTGAAAGGGTGCCACTAGCTTGTGGGGTT
*
1121486 TTGAAAAGGGTGCCACTAACTTGT
1 TTG-AAAGGGTGCCACTAGCTTGT
1121510 AAGCTTTAAA
Statistics
Matches: 129, Mismatches: 31, Indels: 31
0.68 0.16 0.16
Matches are distributed among these distances:
27 1 0.01
28 28 0.22
29 71 0.55
30 4 0.03
33 2 0.02
36 2 0.02
37 10 0.08
38 11 0.09
ACGTcount: A:0.24, C:0.14, G:0.30, T:0.33
Consensus pattern (29 bp):
TTGAAAGGGTGCCACTAGCTTGTGGGGTT
Found at i:1121418 original size:95 final size:95
Alignment explanation
Indices: 1121212--1121492 Score: 318
Period size: 95 Copynumber: 3.0 Consensus size: 95
1121202 TGTGTGGGCT
* * * * * * * *
1121212 TTGAAAGGATACCACTGACTTGTGGGCTTTGAAAAGATGGCAC-GTACTTGTGGGC-TTTAAAAG
1 TTGAAAGAATACCACTAACTTGTGGGCTTTGAAAGGGTGCCACTG-ATTTATGGGCTTTTGAAAG
* *
1121275 GGTGCTACT-GACTTGCGGGCTTTTGAAAAAA
65 GGTGCCACTAG-CTTGTGGGCTTTTGAAAAAA
* * * * *
1121306 TTGAAAGGATACCACTAACTTGTGGGCTTTGGAAGGGTGCCACTGATTTTTGGGGTTTTGCAAGG
1 TTGAAAGAATACCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGATTTATGGGCTTTTGAAAGG
**
1121371 GTGCCACTAGCTTGTGGGCTTTTGAAAGGA
66 GTGCCACTAGCTTGTGGGCTTTTGAAAAAA
* * *
1121401 TTGAAAGAATACTACTAACTTGTGGGTTTTGAAAGGGTGCCATTGATTTATGGGCTTTTGAAAGG
1 TTGAAAGAATACCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGATTTATGGGCTTTTGAAAGG
* *
1121466 GTGTCACTAACTTGTGGGC-TTTGAAAA
66 GTGCCACTAGCTTGTGGGCTTTTGAAAA
1121493 GGGTGCCACT
Statistics
Matches: 159, Mismatches: 25, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
94 52 0.33
95 106 0.67
96 1 0.01
ACGTcount: A:0.25, C:0.14, G:0.30, T:0.32
Consensus pattern (95 bp):
TTGAAAGAATACCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGATTTATGGGCTTTTGAAAGG
GTGCCACTAGCTTGTGGGCTTTTGAAAAAA
Found at i:1121523 original size:58 final size:58
Alignment explanation
Indices: 1121414--1122918 Score: 587
Period size: 58 Copynumber: 25.9 Consensus size: 58
1121404 AAAGAATACT
* * * * * ** *
1121414 ACTAACTTGTGGGTTTTG-AAAGGGTGCCATTGATTTATGGGCTTTTGAAAGGGTGTC
1 ACTAACTTGTGGGCTTTGAAAAGGGTGCCACTAACTTGTGGGCTTTAAAAAGGGTGCC
** *
1121471 ACTAACTTGTGGGCTTTGAAAAGGGTGCCACTAACTTGTAAGCTTTAAAAAGGTTGCC
1 ACTAACTTGTGGGCTTTGAAAAGGGTGCCACTAACTTGTGGGCTTTAAAAAGGGTGCC
* * * * * * *
1121529 ATTGACTTGTGGGCTTTGAAAA-GATGCAACTGACTTGTGGGCTTTGAAAAGAGTTGCC
1 ACTAACTTGTGGGCTTTGAAAAGGGTGCCACTAACTTGTGGGCTTTAAAAAG-GGTGCC
* * * * * * *
1121587 ACTGACTTGTGGGCTTTGAAAA-GATGCCACTGACTTATGAGCTTTGAGAA-GGTGCC
1 ACTAACTTGTGGGCTTTGAAAAGGGTGCCACTAACTTGTGGGCTTTAAAAAGGGTGCC
** * ** **
1121643 ACTAACTTGTGGGCTTTGAAAA-TTTGTCACTGGCTTGTGGGCTTTAAAAA-GAAGCC
1 ACTAACTTGTGGGCTTTGAAAAGGGTGCCACTAACTTGTGGGCTTTAAAAAGGGTGCC
* * ** * * * ** * *
1121699 ACTGACTTGTGGGCTTT-AAAAAGAAGCCACTAGCTTGTGTGC-TGATGCAAGGTTAGCA
1 ACTAACTTGTGGGCTTTGAAAAGGGTGCCACTAACTTGTGGGCTTTA-AAAAGGGT-GCC
* * * * *
1121757 AC--A-TTGT--G-TTT-AGAAGGGTTGCTA-TCAACTTGTGTGGGCTTT-GAAAGGATACC
1 ACTAACTTGTGGGCTTTGAAAAGGG-TGCCACT-AAC-T-TGTGGGCTTTAAAAAGGGTGCC
* * * *
1121810 ACTGAGTTGTGGGCTTTGAAAA-GATGCCAC-ATACTTGTGGGCTTT-AAAAGGGTGCT
1 ACTAACTTGTGGGCTTTGAAAAGGGTGCCACTA-ACTTGTGGGCTTTAAAAAGGGTGCC
* * * **
1121866 ACTACCTTGCGGGCTTTTGAAAAGATTGAAAGGATACCACTAACTTGTGGGCTTT-GGAAGGGTG
1 ACTAACTTGTGGGC-TTTG-AAA-A--G---GG-TGCCACTAACTTGTGGGCTTTAAAAAGGGTG
1121930 CC
57 CC
* * * **
1121932 ACTGATTTGTGGGCTTTTG-AAAGGGTGCCACTAGCTTGTGGGCTTTTGAAAGGATTGAAAGAAT
1 ACTAACTTGTGGGC-TTTGAAAAGGGTGCCACTAACTTGTGGGC-TTT---A--A---AAAGGGT
* *
1121996 ACT
56 GCC
* * * * * ** *
1121999 ATTAACTTGTGGGTTTTG-AAAGGGTGCCACTGATTTATGGGCTTTTGAAAGGGTGTC
1 ACTAACTTGTGGGCTTTGAAAAGGGTGCCACTAACTTGTGGGCTTTAAAAAGGGTGCC
* * * *
1122056 ACTAACTTGTTGGCTTTGAAAAGGGTGCCACTGACTTGTAGGCTTTAAAAAGGTTGCC
1 ACTAACTTGTGGGCTTTGAAAAGGGTGCCACTAACTTGTGGGCTTTAAAAAGGGTGCC
* * * * * * *
1122114 ATTGACTTGTGGGCTTTG-AAAGGATGCAACTGACTTGTGGGCTTCGAAAATA-GTTGCC
1 ACTAACTTGTGGGCTTTGAAAAGGGTGCCACTAACTTGTGGGCTT-TAAAA-AGGGTGCC
* * * * *
1122172 ACTAACTTGTGGGCTTTGAAAA-GATGCCACTAACTTATGAGCTTTGAGAA-GGTGCC
1 ACTAACTTGTGGGCTTTGAAAAGGGTGCCACTAACTTGTGGGCTTTAAAAAGGGTGCC
* * * * **
1122228 ACTGACTTGTGGGCTTTGAAAA-TGTGTCACTAGCTTGTGGGCTTT-AAAA-GAAGCC
1 ACTAACTTGTGGGCTTTGAAAAGGGTGCCACTAACTTGTGGGCTTTAAAAAGGGTGCC
* * * ** ** * * ** * *
1122283 ACTGACTTATGGGCTTT-AAAAAGAAGCCACTGGCTTGTGTGC-TGATGCAAGGTTAGCA
1 ACTAACTTGTGGGCTTTGAAAAGGGTGCCACTAACTTGTGGGCTTTA-AAAAGGGT-GCC
* * * * *
1122341 AC--A-TTGT--G-TTT-AGAAGGGTTGCTA-TCAACTTGTGTGGGCTTT-GAAAGGATACC
1 ACTAACTTGTGGGCTTTGAAAAGGG-TGCCACT-AAC-T-TGTGGGCTTTAAAAAGGGTGCC
* * * *
1122394 ATTGACTTGTGGGCTTTGAAAA-GATGCCAC-ATACTTGTGGGCTTT-AAAAGGGTGCT
1 ACTAACTTGTGGGCTTTGAAAAGGGTGCCACTA-ACTTGTGGGCTTTAAAAAGGGTGCC
* * * **
1122450 ACTGACTTGCGGGCTTTTGAAAGGATTGAAAGGATACCACTAACTTGTGGGCTTT-GGAAGGGTG
1 ACTAACTTGTGGGC-TTTGAAA--A--G---GG-TGCCACTAACTTGTGGGCTTTAAAAAGGGTG
1122514 CC
57 CC
* * * ** * **
1122516 ACTGATTTGTGGGCTTTTG-AAAGGGTGGCACTAGTTTGTCGGCTTTTGAAAGGATTGAAAGAAT
1 ACTAACTTGTGGGC-TTTGAAAAGGGTGCCACTAACTTGTGGGC-TTT---A--A---AAAGGGT
* *
1122580 ACT
56 GCC
* * * * ** *
1122583 ACTAACTTGTGGGTTTTG-AAAGGGTGCCACTGATTTATGGGCTTTTGAAAGGGTGTC
1 ACTAACTTGTGGGCTTTGAAAAGGGTGCCACTAACTTGTGGGCTTTAAAAAGGGTGCC
* * *
1122640 ACTAACTTGTGGGCTTTGAAAAGGGTGCCACTGACTTGTAGGCTTTAAAAAGGTTGCC
1 ACTAACTTGTGGGCTTTGAAAAGGGTGCCACTAACTTGTGGGCTTTAAAAAGGGTGCC
* * * * * * *
1122698 ATTGACTTGTGGGCTTTG-AAAGGATGCAACTGACTTGTGGGCTTTGAAAAGAGTTGCC
1 ACTAACTTGTGGGCTTTGAAAAGGGTGCCACTAACTTGTGGGCTTTAAAAAG-GGTGCC
* * * * * ** * *
1122756 ACTGACTTGTGGGCTTTGAAAA-GATACCACTGACTTATGAACTTTGAGAA-GGTGCC
1 ACTAACTTGTGGGCTTTGAAAAGGGTGCCACTAACTTGTGGGCTTTAAAAAGGGTGCC
* * * ** * **
1122812 ACTGACTTGTGGGCTTTGAAAA-TGTGTCACTGGCTTGTGGGCTTTAAATA-GAAGCC
1 ACTAACTTGTGGGCTTTGAAAAGGGTGCCACTAACTTGTGGGCTTTAAAAAGGGTGCC
* * * ** * *
1122868 ATTGACTTGTGGGCTTT-AAAAAGAAGCCACTGACTTGTGGGCTTTGAAAAG
1 ACTAACTTGTGGGCTTTGAAAAGGGTGCCACTAACTTGTGGGCTTTAAAAAG
1122919 AAGTCGTATT
Statistics
Matches: 1104, Mismatches: 254, Indels: 180
0.72 0.17 0.12
Matches are distributed among these distances:
52 16 0.01
53 16 0.01
54 19 0.02
55 68 0.06
56 281 0.25
57 182 0.16
58 319 0.29
59 17 0.02
60 6 0.01
61 2 0.00
63 2 0.00
64 2 0.00
65 10 0.01
66 131 0.12
67 33 0.03
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (58 bp):
ACTAACTTGTGGGCTTTGAAAAGGGTGCCACTAACTTGTGGGCTTTAAAAAGGGTGCC
Found at i:1121946 original size:66 final size:66
Alignment explanation
Indices: 1121825--1121953 Score: 163
Period size: 66 Copynumber: 2.0 Consensus size: 66
1121815 GTTGTGGGCT
* *
1121825 TTGAAAAGATGCCACATACTTGTGGGCTTTAAAAGGGTGCTACTACCTTGCGGGCTTTTGAAAAG
1 TTGAAAAGATACCACATACTTGTGGGCTTTAAAAGGGTGCCACTACCTTGCGGGCTTTTGAAAAG
1121890 A
66 A
* ** * *
1121891 TTGAAAGGATACCAC-TAACTTGTGGGCTTTGGAAGGGTGCCACTGA-TTTGTGGGCTTTTGAAA
1 TTGAAAAGATACCACAT-ACTTGTGGGCTTTAAAAGGGTGCCACT-ACCTTGCGGGCTTTTGAAA
1121954 GGGTGCCACT
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
65 1 0.02
66 52 0.96
67 1 0.02
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (66 bp):
TTGAAAAGATACCACATACTTGTGGGCTTTAAAAGGGTGCCACTACCTTGCGGGCTTTTGAAAAG
A
Found at i:1122005 original size:95 final size:95
Alignment explanation
Indices: 1121797--1122249 Score: 358
Period size: 95 Copynumber: 5.0 Consensus size: 95
1121787 TGTGTGGGCT
* * * * * * *
1121797 TTGAAAGGATACCACTGAGTTGTGGGCTTTGAAAAGATGCCACAT-ACTTGTGGGC-TTTAAAAG
1 TTGAAAGAATACCACTAACTTGTGGGCTTTGAAAGGGTGCCAC-TGATTTGTGGGCTTTTGAAAG
* * *
1121860 GGTGCTACTACCTTGCGGGCTTTTGAAAAGA
65 GGTGCCACTAACTTGTGGGCTTTTGAAAAGA
* *
1121891 TTGAAAGGATACCACTAACTTGTGGGCTTTGGAAGGGTGCCACTGATTTGTGGGCTTTTGAAAGG
1 TTGAAAGAATACCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGATTTGTGGGCTTTTGAAAGG
* *
1121956 GTGCCACTAGCTTGTGGGCTTTTGAAAGGA
66 GTGCCACTAACTTGTGGGCTTTTGAAAAGA
* * * *
1121986 TTGAAAGAATACTATTAACTTGTGGGTTTTGAAAGGGTGCCACTGATTTATGGGCTTTTGAAAGG
1 TTGAAAGAATACCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGATTTGTGGGCTTTTGAAAGG
* *
1122051 GTGTCACTAACTTGTTGGC-TTTGAAAAG-
66 GTGCCACTAACTTGTGGGCTTTTGAAAAGA
* * * * * * *
1122079 --G---G--TGCCACTGACTTGTAGGCTTTAAAAAGGTTGCCATTGACTTGTGGGC-TTTGAAAG
1 TTGAAAGAATACCACTAACTTGTGGGCTTT-GAAAGGGTGCCACTGATTTGTGGGCTTTTGAAAG
* * * *
1122136 GATGCAACTGACTTGTGGGC-TTCG-AAA-A
65 GGTGCCACTAACTTGTGGGCTTTTGAAAAGA
* * * * * * * *
1122164 -T---AG-TTGCCACTAACTTGTGGGCTTTGAAAAGATGCCACTAACTTATGAGC-TTTGAGAA-
1 TTGAAAGAATACCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGATTTGTGGGCTTTTGA-AAG
*
1122222 GGTGCCACTGACTTGTGGGC-TTTGAAAA
65 GGTGCCACTAACTTGTGGGCTTTTGAAAA
1122250 TGTGTCACTA
Statistics
Matches: 300, Mismatches: 50, Indels: 25
0.80 0.13 0.07
Matches are distributed among these distances:
85 3 0.01
86 86 0.29
87 44 0.15
88 1 0.00
91 1 0.00
93 1 0.00
94 55 0.18
95 109 0.36
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (95 bp):
TTGAAAGAATACCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGATTTGTGGGCTTTTGAAAGG
GTGCCACTAACTTGTGGGCTTTTGAAAAGA
Found at i:1122520 original size:66 final size:66
Alignment explanation
Indices: 1122409--1122539 Score: 183
Period size: 66 Copynumber: 2.0 Consensus size: 66
1122399 CTTGTGGGCT
* *
1122409 TTGAAAAGATGCCACATACTTGTGGGCTTTAAAAGGGTGCTACTGACTTGCGGGCTTTTGAAAGG
1 TTGAAAAGATACCACATACTTGTGGGCTTTAAAAGGGTGCCACTGACTTGCGGGCTTTTGAAAGG
1122474 A
66 A
* ** * *
1122475 TTGAAAGGATACCAC-TAACTTGTGGGCTTTGGAAGGGTGCCACTGATTTGTGGGCTTTTGAAAG
1 TTGAAAAGATACCACAT-ACTTGTGGGCTTTAAAAGGGTGCCACTGACTTGCGGGCTTTTGAAAG
1122539 G
65 G
1122540 GTGGCACTAG
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
65 1 0.02
66 56 0.98
ACGTcount: A:0.25, C:0.15, G:0.31, T:0.30
Consensus pattern (66 bp):
TTGAAAAGATACCACATACTTGTGGGCTTTAAAAGGGTGCCACTGACTTGCGGGCTTTTGAAAGG
A
Found at i:1122591 original size:584 final size:584
Alignment explanation
Indices: 1121151--1122906 Score: 3199
Period size: 584 Copynumber: 3.0 Consensus size: 584
1121141 AGAATGTCAA
1121151 TGTGCTGATGCAAGGTTAGCAACATTGTGTTTAGAAGGGTTGCTATCAACTTGTGTGGGCTTTGA
1 TGTGCTGATGCAAGGTTAGCAACATTGTGTTTAGAAGGGTTGCTATCAACTTGTGTGGGCTTTGA
* *
1121216 AAGGATACCACTGACTTGTGGGCTTTGAAAAGATGGCACGTACTTGTGGGCTTTAAAAGGGTGCT
66 AAGGATACCACTGACTTGTGGGCTTTGAAAAGATGCCACATACTTGTGGGCTTTAAAAGGGTGCT
*
1121281 ACTGACTTGCGGGCTTTTGAAAAAATTGAAAGGATACCACTAACTTGTGGGCTTTGGAAGGGTGC
131 ACTGACTTGCGGGCTTTTGAAAAGATTGAAAGGATACCACTAACTTGTGGGCTTTGGAAGGGTGC
* * *
1121346 CACTGATTTTTGGGGTTTTGCAAGGGTGCCACTAGCTTGTGGGCTTTTGAAAGGATTGAAAGAAT
196 CACTGATTTGTGGGCTTTTGAAAGGGTGCCACTAGCTTGTGGGCTTTTGAAAGGATTGAAAGAAT
*
1121411 ACTACTAACTTGTGGGTTTTGAAAGGGTGCCATTGATTTATGGGCTTTTGAAAGGGTGTCACTAA
261 ACTACTAACTTGTGGGTTTTGAAAGGGTGCCACTGATTTATGGGCTTTTGAAAGGGTGTCACTAA
* *
1121476 CTTGTGGGCTTTGAAAAGGGTGCCACTAACTTGTAAGCTTTAAAAAGGTTGCCATTGACTTGTGG
326 CTTGTGGGCTTTGAAAAGGGTGCCACTGACTTGTAGGCTTTAAAAAGGTTGCCATTGACTTGTGG
*
1121541 GCTTTGAAAAGATGCAACTGACTTGTGGGCTTTGAAAAGAGTTGCCACTGACTTGTGGGCTTTGA
391 GCTTTGAAAGGATGCAACTGACTTGTGGGCTTTGAAAAGAGTTGCCACTGACTTGTGGGCTTTGA
* *
1121606 AAAGATGCCACTGACTTATGAGCTTTGAGAAGGTGCCACTAACTTGTGGGCTTTGAAAATTTGTC
456 AAAGATGCCACTGACTTATGAGCTTTGAGAAGGTGCCACTGACTTGTGGGCTTTGAAAATGTGTC
*
1121671 ACTGGCTTGTGGGCTTTAAAAAGAAGCCACTGACTTGTGGGCTTTAAAAAGAAGCCACTAGCTTG
521 ACTGGCTTGTGGGCTTT-AAAAGAAGCCACTGACTTGTGGGCTTTAAAAAGAAGCCACTGGCTTG
1121736 TGTGCTGATGCAAGGTTAGCAACATTGTGTTTAGAAGGGTTGCTATCAACTTGTGTGGGCTTTGA
1 TGTGCTGATGCAAGGTTAGCAACATTGTGTTTAGAAGGGTTGCTATCAACTTGTGTGGGCTTTGA
*
1121801 AAGGATACCACTGAGTTGTGGGCTTTGAAAAGATGCCACATACTTGTGGGCTTTAAAAGGGTGCT
66 AAGGATACCACTGACTTGTGGGCTTTGAAAAGATGCCACATACTTGTGGGCTTTAAAAGGGTGCT
1121866 ACT-ACCTTGCGGGCTTTTGAAAAGATTGAAAGGATACCACTAACTTGTGGGCTTTGGAAGGGTG
131 ACTGA-CTTGCGGGCTTTTGAAAAGATTGAAAGGATACCACTAACTTGTGGGCTTTGGAAGGGTG
1121930 CCACTGATTTGTGGGCTTTTGAAAGGGTGCCACTAGCTTGTGGGCTTTTGAAAGGATTGAAAGAA
195 CCACTGATTTGTGGGCTTTTGAAAGGGTGCCACTAGCTTGTGGGCTTTTGAAAGGATTGAAAGAA
*
1121995 TACTATTAACTTGTGGGTTTTGAAAGGGTGCCACTGATTTATGGGCTTTTGAAAGGGTGTCACTA
260 TACTACTAACTTGTGGGTTTTGAAAGGGTGCCACTGATTTATGGGCTTTTGAAAGGGTGTCACTA
*
1122060 ACTTGTTGGCTTTGAAAAGGGTGCCACTGACTTGTAGGCTTTAAAAAGGTTGCCATTGACTTGTG
325 ACTTGTGGGCTTTGAAAAGGGTGCCACTGACTTGTAGGCTTTAAAAAGGTTGCCATTGACTTGTG
* * *
1122125 GGCTTTGAAAGGATGCAACTGACTTGTGGGCTTCGAAAATAGTTGCCACTAACTTGTGGGCTTTG
390 GGCTTTGAAAGGATGCAACTGACTTGTGGGCTTTGAAAAGAGTTGCCACTGACTTGTGGGCTTTG
*
1122190 AAAAGATGCCACTAACTTATGAGCTTTGAGAAGGTGCCACTGACTTGTGGGCTTTGAAAATGTGT
455 AAAAGATGCCACTGACTTATGAGCTTTGAGAAGGTGCCACTGACTTGTGGGCTTTGAAAATGTGT
* *
1122255 CACTAGCTTGTGGGCTTTAAAAGAAGCCACTGACTTATGGGCTTTAAAAAGAAGCCACTGGCTTG
520 CACTGGCTTGTGGGCTTTAAAAGAAGCCACTGACTTGTGGGCTTTAAAAAGAAGCCACTGGCTTG
1122320 TGTGCTGATGCAAGGTTAGCAACATTGTGTTTAGAAGGGTTGCTATCAACTTGTGTGGGCTTTGA
1 TGTGCTGATGCAAGGTTAGCAACATTGTGTTTAGAAGGGTTGCTATCAACTTGTGTGGGCTTTGA
*
1122385 AAGGATACCATTGACTTGTGGGCTTTGAAAAGATGCCACATACTTGTGGGCTTTAAAAGGGTGCT
66 AAGGATACCACTGACTTGTGGGCTTTGAAAAGATGCCACATACTTGTGGGCTTTAAAAGGGTGCT
*
1122450 ACTGACTTGCGGGCTTTTGAAAGGATTGAAAGGATACCACTAACTTGTGGGCTTTGGAAGGGTGC
131 ACTGACTTGCGGGCTTTTGAAAAGATTGAAAGGATACCACTAACTTGTGGGCTTTGGAAGGGTGC
* * *
1122515 CACTGATTTGTGGGCTTTTGAAAGGGTGGCACTAGTTTGTCGGCTTTTGAAAGGATTGAAAGAAT
196 CACTGATTTGTGGGCTTTTGAAAGGGTGCCACTAGCTTGTGGGCTTTTGAAAGGATTGAAAGAAT
1122580 ACTACTAACTTGTGGGTTTTGAAAGGGTGCCACTGATTTATGGGCTTTTGAAAGGGTGTCACTAA
261 ACTACTAACTTGTGGGTTTTGAAAGGGTGCCACTGATTTATGGGCTTTTGAAAGGGTGTCACTAA
1122645 CTTGTGGGCTTTGAAAAGGGTGCCACTGACTTGTAGGCTTTAAAAAGGTTGCCATTGACTTGTGG
326 CTTGTGGGCTTTGAAAAGGGTGCCACTGACTTGTAGGCTTTAAAAAGGTTGCCATTGACTTGTGG
1122710 GCTTTGAAAGGATGCAACTGACTTGTGGGCTTTGAAAAGAGTTGCCACTGACTTGTGGGCTTTGA
391 GCTTTGAAAGGATGCAACTGACTTGTGGGCTTTGAAAAGAGTTGCCACTGACTTGTGGGCTTTGA
* *
1122775 AAAGATACCACTGACTTATGAACTTTGAGAAGGTGCCACTGACTTGTGGGCTTTGAAAATGTGTC
456 AAAGATGCCACTGACTTATGAGCTTTGAGAAGGTGCCACTGACTTGTGGGCTTTGAAAATGTGTC
* *
1122840 ACTGGCTTGTGGGCTTTAAATAGAAGCCATTGACTTGTGGGCTTTAAAAAGAAGCCACTGACTTG
521 ACTGGCTTGTGGGCTTTAAA-AGAAGCCACTGACTTGTGGGCTTTAAAAAGAAGCCACTGGCTTG
1122905 TG
1 TG
1122907 GGCTTTGAAA
Statistics
Matches: 1128, Mismatches: 40, Indels: 6
0.96 0.03 0.01
Matches are distributed among these distances:
584 569 0.50
585 559 0.50
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (584 bp):
TGTGCTGATGCAAGGTTAGCAACATTGTGTTTAGAAGGGTTGCTATCAACTTGTGTGGGCTTTGA
AAGGATACCACTGACTTGTGGGCTTTGAAAAGATGCCACATACTTGTGGGCTTTAAAAGGGTGCT
ACTGACTTGCGGGCTTTTGAAAAGATTGAAAGGATACCACTAACTTGTGGGCTTTGGAAGGGTGC
CACTGATTTGTGGGCTTTTGAAAGGGTGCCACTAGCTTGTGGGCTTTTGAAAGGATTGAAAGAAT
ACTACTAACTTGTGGGTTTTGAAAGGGTGCCACTGATTTATGGGCTTTTGAAAGGGTGTCACTAA
CTTGTGGGCTTTGAAAAGGGTGCCACTGACTTGTAGGCTTTAAAAAGGTTGCCATTGACTTGTGG
GCTTTGAAAGGATGCAACTGACTTGTGGGCTTTGAAAAGAGTTGCCACTGACTTGTGGGCTTTGA
AAAGATGCCACTGACTTATGAGCTTTGAGAAGGTGCCACTGACTTGTGGGCTTTGAAAATGTGTC
ACTGGCTTGTGGGCTTTAAAAGAAGCCACTGACTTGTGGGCTTTAAAAAGAAGCCACTGGCTTG
Found at i:1122663 original size:95 final size:94
Alignment explanation
Indices: 1122381--1122660 Score: 350
Period size: 95 Copynumber: 3.0 Consensus size: 94
1122371 TGTGTGGGCT
* * * * * * *
1122381 TTGAAAGGATACCATTGACTTGTGGGCTTTGAAAAGATGCCACAT-ACTTGTGGGC-TTTAAAAG
1 TTGAAAGAATACCACTAACTTGTGGGCTTTGAAAGGGTGCCAC-TGATTTGTGGGCTTTTGAAAG
* *
1122444 GGTGCTACTGACTTGCGGGCTTTTGAAAGGA
65 GGTGC-ACTAACTTGTGGGCTTTTGAAAGGA
* *
1122475 TTGAAAGGATACCACTAACTTGTGGGCTTTGGAAGGGTGCCACTGATTTGTGGGCTTTTGAAAGG
1 TTGAAAGAATACCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGATTTGTGGGCTTTTGAAAGG
** *
1122540 GTGGCACTAGTTTGTCGGCTTTTGAAAGGA
66 GT-GCACTAACTTGTGGGCTTTTGAAAGGA
* * *
1122570 TTGAAAGAATACTACTAACTTGTGGGTTTTGAAAGGGTGCCACTGATTTATGGGCTTTTGAAAGG
1 TTGAAAGAATACCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGATTTGTGGGCTTTTGAAAGG
1122635 GTGTCACTAACTTGTGGGC-TTTGAAA
66 GTG-CACTAACTTGTGGGCTTTTGAAA
1122661 AGGGTGCCAC
Statistics
Matches: 162, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
93 1 0.01
94 55 0.34
95 104 0.64
96 2 0.01
ACGTcount: A:0.25, C:0.14, G:0.30, T:0.32
Consensus pattern (94 bp):
TTGAAAGAATACCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGATTTGTGGGCTTTTGAAAGG
GTGCACTAACTTGTGGGCTTTTGAAAGGA
Done.