Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold383
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1247277
ACGTcount: A:0.21, C:0.11, G:0.11, T:0.21
Warning! 434286 characters in sequence are not A, C, G, or T
File 3 of 5
Found at i:741576 original size:43 final size:43
Alignment explanation
Indices: 741527--742484 Score: 622
Period size: 43 Copynumber: 22.4 Consensus size: 43
741517 ATGGATAAAA
*
741527 AAGTCTCCAAGGTCAAAGCTGACAGGCAGACTTAAGAGGGAAG
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTAAGAGGGAAG
* * * * *
741570 AAGTCTCTC-GGGTCTAAGCCGATAGGCAGA-TGGT-GGA-TGAAG
1 AAGTCTC-CAAGGTCAAAGCCGACAGGCAGACT--TAAGAGGGAAG
* * *
741612 AAGTCTCCAAGGTCAAAACGGATAGGCAGACTTAAGAGGGAAG
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTAAGAGGGAAG
* *
741655 AAGTCTCCAAGGTCAAAGCCGACACGCAGACTT-A-AGGGCA-
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTAAGAGGGAAG
* * *
741695 AAGTCTTCAAGGTCAAAGCTGACAAGCAGACTTAAG-GGCGAAG
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTAAGAGG-GAAG
* * * * *
741738 ATGTCTCCAGGGTCAAAGCCGATAAGCAGACTTAAG-GGAGAAA
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTAAGAGG-GAAG
** * * *
741781 AAGTCTCCGGGGTCAAAGCCGATC-GGTAAACTTAAGGGGGAAG
1 AAGTCTCCAAGGTCAAAGCCGA-CAGGCAGACTTAAGAGGGAAG
* * * ** **
741824 AAGTCTCTAGGGTCAAAGCAGACAGATAGAC-T--GATGCTAAG
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTAAGA-GGGAAG
* * * *
741865 AAAGTCTCCAGGGTCAAAGCCGATAGGCAGACTTAAAAGCGAAG
1 -AAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTAAGAGGGAAG
* * *
741909 AAGTC-CCTAAGGTCAAAGCTGGCAGACAGACTTAA-AGGCGAAG
1 AAGTCTCC-AAGGTCAAAGCCGACAGGCAGACTTAAGAGG-GAAG
** * * * * * *
741952 AAGTCTTTAGGGTCAAAGCAGATAGGCAGACTTTAG-GACGAAA
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTAAGAG-GGAAG
* * * * * *
741995 AAGTCTCTTAA-GTTAAAGCCGACAAGCA-ATCTAAATAGGGGAAA
1 AAGTCTC-CAAGGTCAAAGCCGACAGGCAGA-CTTAAGA-GGGAAG
* * * * ** *
742039 AAGTCTCCAGGGTCAAAGCTGATAGGCAGACTTAAAAGCAAAA
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTAAGAGGGAAG
* * * *
742082 AAGTCTCCAAGGTCAAAACTGACAGGCAGACTAAAGTGGGAAG
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTAAGAGGGAAG
* ** * *
742125 AAGTCTCCAAGGTCAAAGCTGACA-ATAGACTAAAGGGGGAAG
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTAAGAGGGAAG
*
742167 AAGTCTCCAAGGTCAAAGCCGATAGGCAGA-TTAA-AGGGAGAAG
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTAAGA-GG-GAAG
* * * * *
742210 AAGTGTCTAGGGTCAAAGACGACAAGCAGACTTAAG-GGCGAAG
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTAAGAGG-GAAG
* * * ** * *
742253 AAGTGTCCATGATCAAAATCGATAGGCAGACATAAG-GGCGAAG
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTAAGAGG-GAAG
* * *
742296 AAGTCTCCAAGGTCAAAGTCGATAGGCAGACTTAAGGGGGAAG
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTAAGAGGGAAG
* ** *
742339 AAGTCTCCAAGGTCAAAGCCAACAGTTAGAC-T--GATGGTAAG
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTAAGA-GGGAAG
* * * * *
742380 AAAGTCT-CTAGAATTAAAGCCGACAGGCAGACTAAAGAGGTAAG
1 -AAGTCTCCAAG-GTCAAAGCCGACAGGCAGACTTAAGAGGGAAG
* * * * *
742424 AAGTTTCCAGGGTCACAGCCGATAGGCAGACTTAAG-GGTGAGG
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTAAGAGG-GAAG
* *
742467 AAGTCTTCAGGGTCAAAG
1 AAGTCTCCAAGGTCAAAG
742485 TTGACAAGCA
Statistics
Matches: 719, Mismatches: 152, Indels: 88
0.75 0.16 0.09
Matches are distributed among these distances:
40 32 0.04
41 22 0.03
42 133 0.18
43 473 0.66
44 54 0.08
45 5 0.01
ACGTcount: A:0.37, C:0.18, G:0.29, T:0.16
Consensus pattern (43 bp):
AAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTAAGAGGGAAG
Found at i:741586 original size:85 final size:86
Alignment explanation
Indices: 741481--742455 Score: 404
Period size: 85 Copynumber: 11.4 Consensus size: 86
741471 AACGGTGGAT
** * * *
741481 GAAGAAGTCTCTCGAATCTAAGTCGATGGGCAGAC-GATGGATAAAAAAGTCTCCAAGGTCAAAG
1 GAAGAAGTCTCTCGGGTCAAAGCCGATAGGCAGACTGATGGATAAAAAAGTCTCCAAGGTCAAAG
*
741545 CTGACAGGCAGACTTAAGAGG
66 CCGACAGGCAGACTTAAGAGG
* * * * *
741566 GAAGAAGTCTCTCGGGTCTAAGCCGATAGGCAGA-TGGTGGATGAAGAAGTCTCCAAGGTCAAAA
1 GAAGAAGTCTCTCGGGTCAAAGCCGATAGGCAGACTGATGGATAAAAAAGTCTCCAAGGTCAAAG
* *
741630 CGGATAGGCAGACTTAAGAGG
66 CCGACAGGCAGACTTAAGAGG
* * * * * ** *
741651 GAAGAAGTCTC-CAAGGTCAAAGCCGACACGCAGACTTAAGG---GCAAAGTCTTCAAGGTCAAA
1 GAAGAAGTCTCTC-GGGTCAAAGCCGATAGGCAGACTGATGGATAAAAAAGTCTCCAAGGTCAAA
* *
741712 GCTGACAAGCAGACTTAAG-GG
65 GCCGACAGGCAGACTTAAGAGG
* * * * * **
741733 CGAAGATGTCTC-CAGGGTCAAAGCCGATAAGCAGACTTAAGGGA-GAAAAAGTCTCCGGGGTCA
1 -GAAGAAGTCTCTC-GGGTCAAAGCCGATAGGCAGAC-TGATGGATAAAAAAGTCTCCAAGGTCA
* * *
741796 AAGCCGATC-GGTAAACTTAAGGGG
63 AAGCCGA-CAGGCAGACTTAAGAGG
* * * ** * * *
741820 GAAGAAGTCTCTAGGGTCAAAGCAGACAGATAGACTGAT-GCTAAGAAAGTCTCCAGGGTCAAAG
1 GAAGAAGTCTCTCGGGTCAAAGCCGATAGGCAGACTGATGGATAAAAAAGTCTCCAAGGTCAAAG
* * *
741884 CCGATAGGCAGACTTAAAAGC
66 CCGACAGGCAGACTTAAGAGG
* ** * ** * * * ** * ** *
741905 GAAGAAGTCCCTAAGGTCAAAGCTGGCAGACAGACTTAAAGG-CGAAGAAGTCTTTAGGGTCAAA
1 GAAGAAGTCTCTCGGGTCAAAGCCGATAGGCAGAC-TGATGGATAAAAAAGTCTCCAAGGTCAAA
* * * *
741969 GCAGATAGGCAGACTTTAG-GAC
65 GCCGACAGGCAGACTTAAGAG-G
* *** * * * * ** *
741991 GAAAAAGTCTCTTAAGTTAAAGCCGACAAGCA-ATCTAAATAGG-GGAAAAAGTCTCCAGGGTCA
1 GAAGAAGTCTCTCGGGTCAAAGCCGATAGGCAGA-CT-GAT-GGATAAAAAAGTCTCCAAGGTCA
* * * *
742054 AAGCTGATAGGCAGACTTAAAAGC
63 AAGCCGACAGGCAGACTTAAGAGG
* * * * * * * * *
742078 AAAAAAGTCTC-CAAGGTCAAAACTGACAGGCAGACTAAAGTGG--GAAGAAGTCTCCAAGGTCA
1 GAAGAAGTCTCTC-GGGTCAAAGCCGATAGGCAGACT-GA-TGGATAAAAAAGTCTCCAAGGTCA
* ** * *
742140 AAGCTGACA-ATAGACTAAAGGGG
63 AAGCCGACAGGCAGACTTAAGAGG
* * * * * * * * *
742163 GAAGAAGTCTC-CAAGGTCAAAGCCGATAGGCAGATTAAAGGGA-GAAGAAGTGTCTAGGGTCAA
1 GAAGAAGTCTCTC-GGGTCAAAGCCGATAGGCAGACT-GATGGATAAAAAAGTCTCCAAGGTCAA
* *
742226 AGACGACAAGCAGACTTAAG-GG
64 AGCCGACAGGCAGACTTAAGAGG
* * * ** * *** *
742248 CGAAGAAGTGTC-CATGATCAAAATCGATAGGCAGACAT-AAGGGCGAAGAAGTCTCCAAGGTCA
1 -GAAGAAGTCTCTC-GGGTCAAAGCCGATAGGCAGAC-TGATGGATAAAAAAGTCTCCAAGGTCA
* * *
742311 AAGTCGATAGGCAGACTTAAGGGG
63 AAGCCGACAGGCAGACTTAAGAGG
* * * ** * * * *
742335 GAAGAAGTCTC-CAAGGTCAAAGCCAACAGTTAGACTGATGG-TAAGAAAGTCT-CTAGAATTAA
1 GAAGAAGTCTCTC-GGGTCAAAGCCGATAGGCAGACTGATGGATAAAAAAGTCTCCAAG-GTCAA
*
742397 AGCCGACAGGCAGACTAAAGAGG
64 AGCCGACAGGCAGACTTAAGAGG
* * *
742420 TAAGAAGTTTC-CAGGGTCACAGCCGATAGGCAGACT
1 GAAGAAGTCTCTC-GGGTCAAAGCCGATAGGCAGACT
742456 TAAGGGTGAG
Statistics
Matches: 694, Mismatches: 166, Indels: 60
0.75 0.18 0.07
Matches are distributed among these distances:
82 2 0.00
83 62 0.09
84 11 0.02
85 297 0.43
86 244 0.35
87 75 0.11
88 3 0.00
ACGTcount: A:0.37, C:0.18, G:0.28, T:0.16
Consensus pattern (86 bp):
GAAGAAGTCTCTCGGGTCAAAGCCGATAGGCAGACTGATGGATAAAAAAGTCTCCAAGGTCAAAG
CCGACAGGCAGACTTAAGAGG
Found at i:741899 original size:128 final size:127
Alignment explanation
Indices: 741527--742484 Score: 630
Period size: 128 Copynumber: 7.5 Consensus size: 127
741517 ATGGATAAAA
* * * * *
741527 AAGTCTCCAAGGTCAAAGCTGACAGGCAGACTTAAGAGG-GAAGAAGTCTCTCGGGTCTAAGCCG
1 AAGTCTCCAAGGTCAAAGCCGATAGGCAGACTTAAG-GGCGAAGAAGTCTCTAGGGTCAAAGCAG
* * ** * * * * * *
741591 ATAGGCAGA-TGGTG-GATGAAGAAGTCTCCAAGGTCAAAACGGATAGGCAGACTTAAGAGGGAA
65 ACAGACAGACTAATGCGAAG-A-AAGTCTCCAGGGTCAAAGCCGACAGGCAGACTAAAG-GGGAA
741654 G
127 G
* * * *
741655 AAGTCTCCAAGGTCAAAGCCGACACGCAGACTTAAGGGC--A-AAGTCT-TCAAGGTCAAAGCTG
1 AAGTCTCCAAGGTCAAAGCCGATAGGCAGACTTAAGGGCGAAGAAGTCTCT-AGGGTCAAAGCAG
* * * * *
741716 ACA-AGCAGACTTAAGGGCGAAG-ATGTCTCCAGGGTCAAAGCCGATAAGCAGACTTAAGGGAGA
65 ACAGA-CAGAC-TAA-TGCGAAGAAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTAAAGGG-GA
*
741779 AA
126 AG
** * * * *
741781 AAGTCTCCGGGGTCAAAGCCGATCGGTAAACTTAAGGGGGAAGAAGTCTCTAGGGTCAAAGCAGA
1 AAGTCTCCAAGGTCAAAGCCGATAGGCAGACTTAAGGGCGAAGAAGTCTCTAGGGTCAAAGCAGA
* * * * * *
741846 CAGATAGACTGATGCTAAGAAAGTCTCCAGGGTCAAAGCCGATAGGCAGACTTAAAAGCGAAG
66 CAGACAGACTAATGCGAAGAAAGTCTCCAGGGTCAAAGCCGACAGGCAGAC-TAAAGGGGAAG
* ** * * *
741909 AAGTC-CCTAAGGTCAAAGCTGGCAGACAGACTTAAAGGCGAAGAAGTCTTTAGGGTCAAAGCAG
1 AAGTCTCC-AAGGTCAAAGCCGATAGGCAGACTTAAGGGCGAAGAAGTCTCTAGGGTCAAAGCAG
* * * * * * * *
741973 ATAGGCAGACTTTAGGACGAA-AAAGTCTCTTA-AGTTAAAGCCGACAAGCA-ATCTAAATAGGG
65 ACAGACAGAC-TAATG-CGAAGAAAGTCTC-CAGGGTCAAAGCCGACAGGCAGA-CT-AA-AGGG
*
742035 GAAA
124 GAAG
* * ** * * * * * *
742039 AAGTCTCCAGGGTCAAAGCTGATAGGCAGACTTAAAAGCAAAAAAGTCTCCAAGGTCAAAACTGA
1 AAGTCTCCAAGGTCAAAGCCGATAGGCAGACTTAAGGGCGAAGAAGTCTCTAGGGTCAAAGCAGA
* * * * **
742104 CAGGCAGACTAAAGTGGGAAG-AAGTCTCCAAGGTCAAAGCTGACA-ATAGACTAAAGGGGGAAG
66 CAGACAGACT-AA-TGCGAAGAAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTAAA-GGGGAAG
* *
742167 AAGTCTCCAAGGTCAAAGCCGATAGGCAGA-TTAAAGGGAGAAGAAGTGTCTAGGGTCAAAG-AC
1 AAGTCTCCAAGGTCAAAGCCGATAGGCAGACTT-AAGGGCGAAGAAGTCTCTAGGGTCAAAGCA-
* * * * ** *
742230 GACA-AGCAGACTTAAGGGCGAAG-AAGTGTCCATGATCAAAATCGATAGGCAGAC-ATAAGGGC
64 GACAGA-CAGAC-TAA-TGCGAAGAAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTA-AAGGG-
742292 GAAG
124 GAAG
* * * *
742296 AAGTCTCCAAGGTCAAAGTCGATAGGCAGACTTAAGGGGGAAGAAGTCTCCAAGGTCAAAGCCA-
1 AAGTCTCCAAGGTCAAAGCCGATAGGCAGACTTAAGGGCGAAGAAGTCTCTAGGGTCAAAG-CAG
** * * ** * *
742360 ACAGTTAGACTGATG-GTAAGAAAGTCTCTAGAATTAAAGCCGACAGGCAGACTAAAGAGGTAAG
65 ACAGACAGACTAATGCG-AAGAAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTAAAG-GGGAAG
* * * * *
742424 AAGTTTCCAGGGTCACAGCCGATAGGCAGACTTAAGGGTGAGGAAGTCT-TCAGGGTCAAAG
1 AAGTCTCCAAGGTCAAAGCCGATAGGCAGACTTAAGGGCGAAGAAGTCTCT-AGGGTCAAAG
742485 TTGACAAGCA
Statistics
Matches: 648, Mismatches: 137, Indels: 90
0.74 0.16 0.10
Matches are distributed among these distances:
124 1 0.00
125 23 0.04
126 67 0.10
127 17 0.03
128 304 0.47
129 138 0.21
130 94 0.15
131 4 0.01
ACGTcount: A:0.37, C:0.18, G:0.29, T:0.16
Consensus pattern (127 bp):
AAGTCTCCAAGGTCAAAGCCGATAGGCAGACTTAAGGGCGAAGAAGTCTCTAGGGTCAAAGCAGA
CAGACAGACTAATGCGAAGAAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTAAAGGGGAAG
Found at i:742282 original size:301 final size:301
Alignment explanation
Indices: 741527--742358 Score: 792
Period size: 301 Copynumber: 2.8 Consensus size: 301
741517 ATGGATAAAA
** *
741527 AAGTCTCCAAGGTCAAAGCTGACAGGCAGACTTAAGAGGGAAGAAGTCTCTC-GGGTCTAAGCCG
1 AAGTCTCCAAGGTCAAAGCTGACAGATAGAC-TAAGAGGGAAGAAGTCTC-CAGGGTCAAAGCCG
* * * *
741591 ATAGGCAGA-T--GGTGGATGAAGAAGTCTCCAAGGTCAAA-ACGGATAGGCAGACTTAAGAGG-
64 ATAGGCAGATTAAAG-GGA-GAAGAAGTCTCTAAGGTCAAAGACGGACAAGCAGACTTAAG-GGC
* * * *
741651 GAAGAAGTCTCCAAGGTCAAAGCCGACACGCAGACTTAAGG-G-CAAAGTCT-TCAAGGTCAAAG
126 GAAGAAGTCTCCAAGGTCAAAACCGATAGGCAGACTTAAGGCGAAAAAGTCTCTCAAGGTCAAAG
* * * * * *
741713 CTGACAAGCAGACTTAAGGGCGAAGATGTCTCCAGGGTCAAAGCCGATAAGCAGACTTAAGGGAG
191 CCGACAAGCAGACTAAAGGGCGAAAAAGTCTCCAGGGTCAAAGCCGATAAGCAGACTTAAAGCAG
** * * *
741778 AAAAAGTCTCCGGGGTCAAAGCCGATCGGTAAACTTAAGGGGGAAG
256 AAAAAGTCTCCAAGGTCAAAACCGATCGGCAAACTAAAGGGGGAAG
* * * **
741824 AAGTCTCTAGGGTCAAAGCAGACAGATAGACT--GATGCTAAGAAAGTCTCCAGGGTCAAAGCCG
1 AAGTCTCCAAGGTCAAAGCTGACAGATAGACTAAGA-GGGAAG-AAGTCTCCAGGGTCAAAGCCG
* * * *
741887 ATAGGCAGACTTAAA-AGCGAAGAAGTCCCTAAGGTCAAAG-CTGG-C-AGACAGACTTAAAGGC
64 ATAGGCAGA-TTAAAGGGAGAAGAAGTCTCTAAGGTCAAAGAC-GGACAAG-CAGACTTAAGGGC
** * * * * * *
741948 GAAGAAGTCTTTAGGGTCAAAGCAGATAGGCAGACTTTAGGACGAAAAAGTCTCTTAA-GTTAAA
126 GAAGAAGTCTCCAAGGTCAAAACCGATAGGCAGACTTAAGG-CGAAAAAGTCTCTCAAGGTCAAA
* *
742012 GCCGACAAGCA-ATCTAAATAGGG-GAAAAAGTCTCCAGGGTCAAAGCTGATAGGCAGACTTAAA
190 GCCGACAAGCAGA-CT-AA-AGGGCGAAAAAGTCTCCAGGGTCAAAGCCGATAAGCAGACTT-AA
* * *
742075 AGCA-AAAAAGTCTCCAAGGTCAAAACTGA-CAGGCAGACTAAAGTGGGAAG
251 AGCAGAAAAAGTCTCCAAGGTCAAAACCGATC-GGCAAACTAAAGGGGGAAG
* *
742125 AAGTCTCCAAGGTCAAAGCTGACA-ATAGACTAAAGGGGGAAGAAGTCTCCAAGGTCAAAGCCGA
1 AAGTCTCCAAGGTCAAAGCTGACAGATAGACT-AAGAGGGAAGAAGTCTCCAGGGTCAAAGCCGA
* *
742189 TAGGCAGATTAAAGGGAGAAGAAGTGTCTAGGGTCAAAGAC-GACAAGCAGACTTAAGGGCGAAG
65 TAGGCAGATTAAAGGGAGAAGAAGTCTCTAAGGTCAAAGACGGACAAGCAGACTTAAGGGCGAAG
* * * * * * *
742253 AAGTGTCCATGATCAAAATCGATAGGCAGACATAAGGGCGAAGAAGTCTC-CAAGGTCAAAGTCG
130 AAGTCTCCAAGGTCAAAACCGATAGGCAGACTTAA-GGCGAAAAAGTCTCTCAAGGTCAAAGCCG
* * * * * *
742317 ATAGGCAGACTTAAGGGGGAAGAAGTCTCCAAGGTCAAAGCC
194 ACAAGCAGACTAAAGGGCGAAAAAGTCTCCAGGGTCAAAGCC
742359 AACAGTTAGA
Statistics
Matches: 429, Mismatches: 75, Indels: 59
0.76 0.13 0.10
Matches are distributed among these distances:
294 2 0.00
295 5 0.01
296 31 0.07
297 89 0.21
298 4 0.01
299 6 0.01
300 62 0.14
301 211 0.49
302 18 0.04
303 1 0.00
ACGTcount: A:0.37, C:0.18, G:0.28, T:0.16
Consensus pattern (301 bp):
AAGTCTCCAAGGTCAAAGCTGACAGATAGACTAAGAGGGAAGAAGTCTCCAGGGTCAAAGCCGAT
AGGCAGATTAAAGGGAGAAGAAGTCTCTAAGGTCAAAGACGGACAAGCAGACTTAAGGGCGAAGA
AGTCTCCAAGGTCAAAACCGATAGGCAGACTTAAGGCGAAAAAGTCTCTCAAGGTCAAAGCCGAC
AAGCAGACTAAAGGGCGAAAAAGTCTCCAGGGTCAAAGCCGATAAGCAGACTTAAAGCAGAAAAA
GTCTCCAAGGTCAAAACCGATCGGCAAACTAAAGGGGGAAG
Found at i:742387 original size:214 final size:214
Alignment explanation
Indices: 742059--742470 Score: 483
Period size: 214 Copynumber: 1.9 Consensus size: 214
742049 GGTCAAAGCT
* *
742059 GATAGGCAGACTTAAAAGCAAAAAAGTCTCCAAGGTCAAAACTGACAGGCAGACTAAAGTGGGAA
1 GATAGGCAGACATAAAAGCAAAAAAGTCTCCAAGGTCAAAACTGACAGGCAGACTAAAGGGGGAA
** *
742124 GAAGTCTCCAAGGTCAAAGCTGACAATAGACTAAAGGGGGAAGAAGTCTCCAAG-GTCAAAGCCG
66 GAAGTCTCCAAGGTCAAAGCCAACAATAGACTAAAGGGGGAAGAAGTCT-CAAGAATCAAAGCCG
* * *
742188 ATAGGCAGATTAAAG-GGAGAAGAAGTGTCTAGGGTCAAAGACGACAAGCAGACTTAAGGGCGAA
130 ACAGGCAGACTAAAGAGG-GAAGAAGTGTCCAGGGTCAAAGACGACAAGCAGACTTAAGGGCGAA
742252 GAAGTGTCCATGATCAAAATC
194 GAAGTGTCCATGATCAAAATC
** * * * * *
742273 GATAGGCAGACATAAGGGCGAAGAAGTCTCCAAGGTC-AAAGTCGATAGGCAGACTTAAGGGGGA
1 GATAGGCAGACATAAAAGCAAAAAAGTCTCCAAGGTCAAAACT-GACAGGCAGACTAAAGGGGGA
* * * * * *
742337 AGAAGTCTCCAAGGTCAAAGCCAACAGTTAGACT-GA-TGGTAAGAAAGTCTCTAGAATTAAAGC
65 AGAAGTCTCCAAGGTCAAAGCCAACA-ATAGACTAAAGGGGGAAG-AAGTCTCAAGAATCAAAGC
* * * * * * *
742400 CGACAGGCAGACTAAAGAGGTAAGAAGTTTCCAGGGTCACAGCCGATAGGCAGACTTAAGGGTGA
128 CGACAGGCAGACTAAAGAGGGAAGAAGTGTCCAGGGTCAAAGACGACAAGCAGACTTAAGGGCGA
*
742465 GGAAGT
193 AGAAGT
742471 CTTCAGGGTC
Statistics
Matches: 164, Mismatches: 29, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
213 12 0.07
214 144 0.88
215 8 0.05
ACGTcount: A:0.39, C:0.17, G:0.29, T:0.16
Consensus pattern (214 bp):
GATAGGCAGACATAAAAGCAAAAAAGTCTCCAAGGTCAAAACTGACAGGCAGACTAAAGGGGGAA
GAAGTCTCCAAGGTCAAAGCCAACAATAGACTAAAGGGGGAAGAAGTCTCAAGAATCAAAGCCGA
CAGGCAGACTAAAGAGGGAAGAAGTGTCCAGGGTCAAAGACGACAAGCAGACTTAAGGGCGAAGA
AGTGTCCATGATCAAAATC
Found at i:742427 original size:171 final size:170
Alignment explanation
Indices: 741526--742484 Score: 667
Period size: 171 Copynumber: 5.6 Consensus size: 170
741516 GATGGATAAA
* * * * * *
741526 AAAGTCTCCAAGGTCAAAGCTGACAGGCAGACTTAAGAGGGAAGAAGTCTCTC-GGGTCTAAGCC
1 AAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTAAAGAGGGAAGAAGTCTC-CAAGGTCAAAACC
*** ** * * *
741590 GATAGGCAGA-TGGTGGATGAAGAAGTCTCCAAGGTCAAAACGGATAGGCAGACTTAAGAGGGAA
65 GATAGGCAGACTTAAGGGCGAAGAAGTCTCCAAGGTCAAAGCAGATAGGCAGACTTAAGGGGGAA
* * *
741654 GAAGTCTCCAAGGTCAAAGCCGACACG-CAGACTTAAGG--G
130 GAAGTCTCCAAGGTCAAAGCCAACA-GTTAGACTGAAGGAAG
* * * * * * * *
741693 CAAAGTCTTCAAGGTCAAAGCTGACAAGCAGACTTAAG-GGCGAAGATGTCTCCAGGGTCAAAGC
1 -AAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTAAAGAGG-GAAGAAGTCTCCAAGGTCAAAAC
* * * ** * * * *
741757 CGATAAGCAGACTTAAGGGAGAAAAAGTCTCCGGGGTCAAAGCCGATCGGTAAACTTAAGGGGGA
64 CGATAGGCAGACTTAAGGGCGAAGAAGTCTCCAAGGTCAAAGCAGATAGGCAGACTTAAGGGGGA
* * * * *
741822 AGAAGTCTCTAGGGTCAAAG-CAGACAGATAGACTGATGCTAAG
129 AGAAGTCTCCAAGGTCAAAGCCA-ACAGTTAGACTGAAG-GAAG
* * *
741865 AAAGTCTCCAGGGTCAAAGCCGATAGGCAGACTTAAA-AGCGAAGAAGTC-CCTAAGGTCAAAGC
1 AAAGTCTCCAGGGTCAAAGCCGACAGGCAGAC-TAAAGAGGGAAGAAGTCTCC-AAGGTCAAAAC
* ** * * ** * * **
741928 TGGCAGACAGACTTAAAGGCGAAGAAGTCTTTAGGGTCAAAGCAGATAGGCAGACTTTAGGACGA
64 CGATAGGCAGACTTAAGGGCGAAGAAGTCTCCAAGGTCAAAGCAGATAGGCAGACTTAAGGGGGA
* * * * * *
741993 AAAAGTCTCTTAA-GTTAAAGCCGACAAGCAATCTA-AAT-AGGGGAA-
129 AGAAGTCTC-CAAGGTCAAAG-C--CAA-CAGT-TAGACTGA-AGGAAG
* * ** * *
742038 AAAGTCTCCAGGGTCAAAGCTGATAGGCAGACTTAAA-AGCAAAAAAGTCTCCAAGGTCAAAACT
1 AAAGTCTCCAGGGTCAAAGCCGACAGGCAGAC-TAAAGAGGGAAGAAGTCTCCAAGGTCAAAACC
* * * * ** *
742102 GACAGGCAGACTAAAGTGG-GAAGAAGTCTCCAAGGTCAAAGCTGACA-ATAGACTAAAGGGGGA
65 GATAGGCAGACTTAAG-GGCGAAGAAGTCTCCAAGGTCAAAGCAGATAGGCAGACTTAAGGGGGA
* * ** * * *
742165 AGAAGTCTCCAAGGTCAAAGCCGATAGGCAGATTAAAGGGAG
129 AGAAGTCTCCAAGGTCAAAGCCAACAGTTAGACTGAAGGAAG
* * * * * * * *
742207 AAGAAGTGTCTAGGGTCAAAGACGACAAGCAGACTTAAG-GGCGAAGAAGTGTCCATGATCAAAA
1 -A-AAGTCTCCAGGGTCAAAGCCGACAGGCAGACTAAAGAGG-GAAGAAGTCTCCAAGGTCAAAA
* *
742271 TCGATAGGCAGACATAAGGGCGAAGAAGTCTCCAAGGTCAAAGTC-GATAGGCAGACTTAAGGGG
63 CCGATAGGCAGACTTAAGGGCGAAGAAGTCTCCAAGGTCAAAG-CAGATAGGCAGACTTAAGGGG
*
742335 GAAGAAGTCTCCAAGGTCAAAGCCAACAGTTAGACTGATGGTAAG
127 GAAGAAGTCTCCAAGGTCAAAGCCAACAGTTAGACTGAAGG-AAG
* ** * * * * * *
742380 AAAGTCTCTAGAATTAAAGCCGACAGGCAGACTAAAGAGGTAAGAAGTTTCCAGGGTCACAGCCG
1 AAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTAAAGAGGGAAGAAGTCTCCAAGGTCAAAACCG
* * * *
742445 ATAGGCAGACTTAAGGGTGAGGAAGTCTTCAGGGTCAAAG
66 ATAGGCAGACTTAAGGGCGAAGAAGTCTCCAAGGTCAAAG
742485 TTGACAAGCA
Statistics
Matches: 617, Mismatches: 140, Indels: 65
0.75 0.17 0.08
Matches are distributed among these distances:
167 4 0.01
168 72 0.12
169 70 0.11
170 9 0.01
171 271 0.44
172 80 0.13
173 94 0.15
174 8 0.01
175 7 0.01
176 2 0.00
ACGTcount: A:0.37, C:0.18, G:0.29, T:0.16
Consensus pattern (170 bp):
AAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTAAAGAGGGAAGAAGTCTCCAAGGTCAAAACCG
ATAGGCAGACTTAAGGGCGAAGAAGTCTCCAAGGTCAAAGCAGATAGGCAGACTTAAGGGGGAAG
AAGTCTCCAAGGTCAAAGCCAACAGTTAGACTGAAGGAAG
Found at i:742636 original size:42 final size:42
Alignment explanation
Indices: 742552--742736 Score: 164
Period size: 42 Copynumber: 4.4 Consensus size: 42
742542 AGGGCTAAAG
* * * * * *
742552 AGTCTCCCAGGTCAAAGCC-ACAGGCAGACAAAGGATAAAGA
1 AGTCTCCTAGGTCTAAGCCGACTGGGAGACAAAAGATAGAGA
* *
742593 AGTCTCCTGGGCCTAAGCCGACTGGGAGACAAAAGATAGAGA
1 AGTCTCCTAGGTCTAAGCCGACTGGGAGACAAAAGATAGAGA
* * * *
742635 AGTCTCCCAGGTCTAAGTCG-GTAGGGAGACAAAAAATAGAGA
1 AGTCTCCTAGGTCTAAGCCGACT-GGGAGACAAAAGATAGAGA
*
742677 AGTCT-CTCAGGTCAAAGCCGAC-GGGCAGACAAAAGATAGAG-
1 AGTCTCCT-AGGTCTAAGCCGACTGGG-AGACAAAAGATAGAGA
* *
742718 AGTTTTCTCAGGTCTAAGC
1 AGTCTCCT-AGGTCTAAGC
742737 TAATGGGCAA
Statistics
Matches: 117, Mismatches: 21, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
41 24 0.21
42 93 0.79
ACGTcount: A:0.36, C:0.21, G:0.28, T:0.16
Consensus pattern (42 bp):
AGTCTCCTAGGTCTAAGCCGACTGGGAGACAAAAGATAGAGA
Found at i:742939 original size:44 final size:44
Alignment explanation
Indices: 742885--743035 Score: 182
Period size: 44 Copynumber: 3.4 Consensus size: 44
742875 TTTGACCAGA
* *
742885 GTGGTAACCATACATCAAATCGAAATGAAAAGAATCTGACAAAG
1 GTGGTAACCATACATCAAATCAAAATGAAAAGAATCTGACTAAG
* * * *
742929 GTGGCAACCATACGTCAGAT-AAGAAT--AAAGCAGATTTGACTAAG
1 GTGGTAACCATACATCAAATCAA-AATGAAAAG-A-ATCTGACTAAG
*
742973 GTGGTAACCATACATCAAATCAAAATGAAAAGAATCTGACTAGG
1 GTGGTAACCATACATCAAATCAAAATGAAAAGAATCTGACTAAG
*
743017 GTGGTAACCATACTTCAAA
1 GTGGTAACCATACATCAAA
743036 CAAGAAAAAT
Statistics
Matches: 89, Mismatches: 12, Indels: 12
0.79 0.11 0.11
Matches are distributed among these distances:
42 4 0.04
43 2 0.02
44 76 0.85
45 3 0.03
46 4 0.04
ACGTcount: A:0.44, C:0.17, G:0.19, T:0.21
Consensus pattern (44 bp):
GTGGTAACCATACATCAAATCAAAATGAAAAGAATCTGACTAAG
Found at i:743082 original size:47 final size:48
Alignment explanation
Indices: 743031--743134 Score: 111
Period size: 48 Copynumber: 2.2 Consensus size: 48
743021 TAACCATACT
*
743031 TCAAACAAGAAAAATG-AGAGTTTGGCCAGGCCCTAAAACCAATATAG
1 TCAAACAAGAAAAATGAAGAGTTTGACCAGGCCCTAAAACCAATATAG
* ** ** * * *
743078 TCAAACGAGGGATGTGAAGAGTTTGACCAGGCCCTAACACTAATATGG
1 TCAAACAAGAAAAATGAAGAGTTTGACCAGGCCCTAAAACCAATATAG
*
743126 TTAAACAAG
1 TCAAACAAG
743135 GGAAGAAAAG
Statistics
Matches: 45, Mismatches: 11, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
47 11 0.24
48 34 0.76
ACGTcount: A:0.40, C:0.18, G:0.22, T:0.19
Consensus pattern (48 bp):
TCAAACAAGAAAAATGAAGAGTTTGACCAGGCCCTAAAACCAATATAG
Found at i:743100 original size:48 final size:48
Alignment explanation
Indices: 743047--743152 Score: 131
Period size: 48 Copynumber: 2.2 Consensus size: 48
743037 AAGAAAAATG
* * **
743047 AGAGTTTGGCCAGGCCCTAAAACCAATATAGTCAAACGAGGGATGTGA
1 AGAGTTTGGCCAGGCCCTAAAACCAATATAGTCAAACAAGGGAAGAAA
* * * * *
743095 AGAGTTTGACCAGGCCCTAACACTAATATGGTTAAACAAGGGAAGAAA
1 AGAGTTTGGCCAGGCCCTAAAACCAATATAGTCAAACAAGGGAAGAAA
743143 AGAGTTTGGC
1 AGAGTTTGGC
743153 TAGGTACAGT
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.37, C:0.17, G:0.26, T:0.20
Consensus pattern (48 bp):
AGAGTTTGGCCAGGCCCTAAAACCAATATAGTCAAACAAGGGAAGAAA
Found at i:743222 original size:35 final size:35
Alignment explanation
Indices: 743178--743246 Score: 102
Period size: 35 Copynumber: 2.0 Consensus size: 35
743168 GAAAGATGAA
**
743178 AAGAGTTTGACCAGATACAATTAAACGATGATGGG
1 AAGAGTTTGACCAGATACAACCAAACGATGATGGG
* *
743213 AAGAGTTTGACTAGATACAACCGAACGATGATGG
1 AAGAGTTTGACCAGATACAACCAAACGATGATGG
743247 AAAAATTTGA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.39, C:0.13, G:0.26, T:0.22
Consensus pattern (35 bp):
AAGAGTTTGACCAGATACAACCAAACGATGATGGG
Found at i:744792 original size:20 final size:20
Alignment explanation
Indices: 744767--744820 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 20
744757 GTTGGGCACA
* * *
744767 ATGTATCGATACATTTTACT
1 ATGTATCGATACAATATACC
744787 ATGTATCGATACAATATACC
1 ATGTATCGATACAATATACC
*
744807 ATGTATTGATACAA
1 ATGTATCGATACAA
744821 ACAGTGATAG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (20 bp):
ATGTATCGATACAATATACC
Found at i:744890 original size:13 final size:13
Alignment explanation
Indices: 744872--744896 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
744862 AATTGAGTGT
744872 GTATCGATACAAC
1 GTATCGATACAAC
744885 GTATCGATACAA
1 GTATCGATACAA
744897 AGCATAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.20, G:0.16, T:0.24
Consensus pattern (13 bp):
GTATCGATACAAC
Found at i:744910 original size:20 final size:19
Alignment explanation
Indices: 744885--744968 Score: 63
Period size: 20 Copynumber: 4.6 Consensus size: 19
744875 TCGATACAAC
744885 GTATCGATACAAAGCATAAT
1 GTATCGATACAAAGCAT-AT
** * *
744905 GTATCGATACATCTGGATGT
1 GTATCGATACA-AAGCATAT
744925 GTATCGAT----A-CA-AT
1 GTATCGATACAAAGCATAT
744938 GTATCGATACAAAGCATAAT
1 GTATCGATACAAAGCAT-AT
744958 GTATCGATACA
1 GTATCGATACA
744969 TCTGGATGTG
Statistics
Matches: 49, Mismatches: 7, Indels: 16
0.68 0.10 0.22
Matches are distributed among these distances:
13 9 0.18
14 1 0.02
17 1 0.02
18 2 0.04
20 33 0.67
21 3 0.06
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.29
Consensus pattern (19 bp):
GTATCGATACAAAGCATAT
Found at i:744914 original size:53 final size:53
Alignment explanation
Indices: 744869--744988 Score: 231
Period size: 53 Copynumber: 2.3 Consensus size: 53
744859 TACAATTGAG
744869 TGTGTATCGATACAACGTATCGATACAAAGCATAATGTATCGATACATCTGGA
1 TGTGTATCGATACAACGTATCGATACAAAGCATAATGTATCGATACATCTGGA
*
744922 TGTGTATCGATACAATGTATCGATACAAAGCATAATGTATCGATACATCTGGA
1 TGTGTATCGATACAACGTATCGATACAAAGCATAATGTATCGATACATCTGGA
744975 TGTGTATCGATACA
1 TGTGTATCGATACA
744989 TTCTAGGTTT
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
53 66 1.00
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.30
Consensus pattern (53 bp):
TGTGTATCGATACAACGTATCGATACAAAGCATAATGTATCGATACATCTGGA
Found at i:744942 original size:13 final size:13
Alignment explanation
Indices: 744924--744949 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
744914 CATCTGGATG
744924 TGTATCGATACAA
1 TGTATCGATACAA
744937 TGTATCGATACAA
1 TGTATCGATACAA
744950 AGCATAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:745099 original size:22 final size:22
Alignment explanation
Indices: 745074--745128 Score: 101
Period size: 22 Copynumber: 2.5 Consensus size: 22
745064 ATTATTTTTA
*
745074 CTTGAAAACATCCGATTTAATG
1 CTTGAAAACACCCGATTTAATG
745096 CTTGAAAACACCCGATTTAATG
1 CTTGAAAACACCCGATTTAATG
745118 CTTGAAAACAC
1 CTTGAAAACAC
745129 TTATACTTAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.38, C:0.22, G:0.13, T:0.27
Consensus pattern (22 bp):
CTTGAAAACACCCGATTTAATG
Found at i:745634 original size:23 final size:25
Alignment explanation
Indices: 745595--745651 Score: 100
Period size: 24 Copynumber: 2.4 Consensus size: 25
745585 CAAATTATAA
745595 CTCCCCCTTAATAAAAAAATTT-TT
1 CTCCCCCTTAATAAAAAAATTTCTT
745619 CTCCCCCTTAAT-AAAAAATTTCTT
1 CTCCCCCTTAATAAAAAAATTTCTT
745643 CTCCCCCTT
1 CTCCCCCTT
745652 TATCTCTCCC
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
23 9 0.28
24 23 0.72
ACGTcount: A:0.30, C:0.33, G:0.00, T:0.37
Consensus pattern (25 bp):
CTCCCCCTTAATAAAAAAATTTCTT
Found at i:753861 original size:19 final size:20
Alignment explanation
Indices: 753837--753887 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 20
753827 CAATTGAGTG
*
753837 TGTATCGATACAATG-A-ACA
1 TGTATCGATACAAAGCATA-A
*
753856 TGTATCAATACAAAGCATAA
1 TGTATCGATACAAAGCATAA
753876 TGTATCGATACA
1 TGTATCGATACA
753888 TCTAGATATG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 13 0.48
20 13 0.48
21 1 0.04
ACGTcount: A:0.43, C:0.16, G:0.14, T:0.27
Consensus pattern (20 bp):
TGTATCGATACAAAGCATAA
Found at i:753898 original size:20 final size:21
Alignment explanation
Indices: 753875--753913 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
753865 ACAAAGCATA
*
753875 ATGTATCGATACA-TCTAGAT
1 ATGTATCAATACATTCTAGAT
753895 ATGTATCAATACATTCTAG
1 ATGTATCAATACATTCTAG
753914 GGTTTTGACC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (21 bp):
ATGTATCAATACATTCTAGAT
Found at i:759111 original size:157 final size:158
Alignment explanation
Indices: 758847--759637 Score: 770
Period size: 157 Copynumber: 5.1 Consensus size: 158
758837 TACCTTTGAT
* * * *
758847 GTAAAAGTATCTCGGCAACCCTAAAGGACTTAAAATGACTCATAAAAGGGATGAACCTATCCTAA
1 GTAAAAGTATCCCAGCAACCCTAAAGGACTTAAAAAGACT-AGAAAAGGGATGAACCTATCCTAA
* * * * *
758912 ATGCCCACTTTCGGTATAAAAGCAG-ACTCGGTGACGAG-CTAGGAGTTGGTTCTAAAAAAGTAC
65 ATGCCCACCTTCGGCATAAAAGCAGAACCCGGTGATGAGCCTAGGAGTTGATTCTAAAAAAGTAC
* * ** *
758975 CAAAATGCCCCTAAGGGTATACCACCGAC
130 GAAAATACCCCTAAGGGTATACCTTCAAC
* *
759004 GTAAAAGTATCCCTGCAACCCTAAAGGACTTAAAAAGACTCATAAAAGGGATGAACCTATCCTAA
1 GTAAAAGTATCCCAGCAACCCTAAAGGACTTAAAAAGACT-AGAAAAGGGATGAACCTATCCTAA
** * * * * * *
759069 ATGCCCACCTTCGGCATAAAAGCAG-ACTTGGCGTTGA-CCTAGGAGTTGGTCCTAAAAAATTAT
65 ATGCCCACCTTCGGCATAAAAGCAGAACCCGGTGATGAGCCTAGGAGTTGATTCTAAAAAAGTAC
759132 GAAAATACCCCT-AGGGATATACCTTCAAC
130 GAAAATACCCCTAAGGG-TATACCTTCAAC
* * * * * *
759161 GTAAAAGTATCCCAGCAATCCTAAAGGACATAAAAAGACTGGAGATGGAGATGGACCTATCCTAA
1 GTAAAAGTATCCCAGCAACCCTAAAGGACTTAAAAAGACTAGAAAAGG-GATGAACCTATCCTAA
* * * * * * * * *
759226 ATGCCCACTTTCGACATCAAAGC-GAACCCGGTGAT-AGCTTAAGACTCGATTCTAAGAAAGTAT
65 ATGCCCACCTTCGGCATAAAAGCAGAACCCGGTGATGAGCCTAGGAGTTGATTCTAAAAAAGTAC
*
759289 GAAAATACCCCTATA-GGTATACCTTCGAC
130 GAAAATACCCCTA-AGGGTATACCTTCAAC
* * * *
759318 GTACAAGTACCCCAGCAACCCTAAAGGACTTAAAATGACTAGAAATA-CGATGAACCTATCCTAA
1 GTAAAAGTATCCCAGCAACCCTAAAGGACTTAAAAAGACTAGAAA-AGGGATGAACCTATCCTAA
* * * *
759382 GTGCCCACCTTCGGCATAAAAG-TGAACCCGGTGA-CAGCCTAGGA-TTCGATTCTAAGAAAGTA
65 ATGCCCACCTTCGGCATAAAAGCAGAACCCGGTGATGAGCCTAGGAGTT-GATTCTAAAAAAGTA
* * * *
759444 CAAAAATGCCCCTATGGGTATATCTTCAAC
129 CGAAAATACCCCTAAGGGTATACCTTCAAC
*
759474 GTAAAAGTATCCC-GACAACCCTAAAGGACTTAAAAAGACTA-AAAATGTGATGAACCTATCCTA
1 GTAAAAGTATCCCAG-CAACCCTAAAGGACTTAAAAAGACTAGAAAA-GGGATGAACCTATCCTA
* * * * * * * * * *
759537 AATGCTCACCTTCGGCATAAAAGCA-AACTCGATGA-CAACCTAAGACTCGATTTTAAAAAATTA
64 AATGCCCACCTTCGGCATAAAAGCAGAACCCGGTGATGAGCCTAGGAGTTGATTCTAAAAAAGTA
* * * **
759600 CCAAAATGCCTCTAAGGG-ATATGTTCAAC
129 CGAAAATACCCCTAAGGGTATACCTTCAAC
759629 GTAAAAGTA
1 GTAAAAGTA
759638 CCCGATATCC
Statistics
Matches: 534, Mismatches: 83, Indels: 36
0.82 0.13 0.06
Matches are distributed among these distances:
154 1 0.00
155 24 0.04
156 214 0.40
157 292 0.55
158 2 0.00
159 1 0.00
ACGTcount: A:0.38, C:0.23, G:0.18, T:0.22
Consensus pattern (158 bp):
GTAAAAGTATCCCAGCAACCCTAAAGGACTTAAAAAGACTAGAAAAGGGATGAACCTATCCTAAA
TGCCCACCTTCGGCATAAAAGCAGAACCCGGTGATGAGCCTAGGAGTTGATTCTAAAAAAGTACG
AAAATACCCCTAAGGGTATACCTTCAAC
Found at i:760811 original size:13 final size:13
Alignment explanation
Indices: 760793--760819 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
760783 ACATTATGTT
760793 TTGTATCGATACA
1 TTGTATCGATACA
760806 TTGTATCGATACA
1 TTGTATCGATACA
760819 T
1 T
760820 GTTCATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:760828 original size:19 final size:19
Alignment explanation
Indices: 760804--760859 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
760794 TGTATCGATA
*
760804 CATTGTATCGATACATGTT
1 CATTGTATCGATACATGCT
* *
760823 CATTGTATCAATACATACT
1 CATTGTATCGATACATGCT
760842 CAATTGTATCGATACATG
1 C-ATTGTATCGATACATG
760860 AAACTGGTAG
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
19 17 0.55
20 14 0.45
ACGTcount: A:0.32, C:0.18, G:0.12, T:0.38
Consensus pattern (19 bp):
CATTGTATCGATACATGCT
Found at i:762622 original size:58 final size:57
Alignment explanation
Indices: 762560--762710 Score: 160
Period size: 58 Copynumber: 2.6 Consensus size: 57
762550 CTGGTGTGGG
* * * *
762560 TTGCTATGGTTCTTTTGTCTTGCTGTTGGTTCTTTCCTACTGCTTGCTTCTTGTTTAT
1 TTGCTATTGTTGTTTTGTCTTGCTGTTGGTTCTTTCCTACTACTTGC-TCTTCTTTAT
* * * * * *
762618 TTGCTATTGTTGTTTTGTCTTACCGTAGGTTCTTTCTTGCTACTTGCTCTTCTTTGT
1 TTGCTATTGTTGTTTTGTCTTGCTGTTGGTTCTTTCCTACTACTTGCTCTTCTTTAT
* * *
762675 TTGCTGTTGATGTTTTGTCTTG-TCATTGGTTCTTTC
1 TTGCTATTGTTGTTTTGTCTTGCT-GTTGGTTCTTTC
762711 TTGTTGCTTG
Statistics
Matches: 76, Mismatches: 16, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
57 37 0.49
58 39 0.51
ACGTcount: A:0.06, C:0.18, G:0.19, T:0.57
Consensus pattern (57 bp):
TTGCTATTGTTGTTTTGTCTTGCTGTTGGTTCTTTCCTACTACTTGCTCTTCTTTAT
Found at i:762706 original size:57 final size:56
Alignment explanation
Indices: 762572--762725 Score: 173
Period size: 57 Copynumber: 2.7 Consensus size: 56
762562 GCTATGGTTC
* * * *
762572 TTTTGTCTTGCTGTTGGTTCTTTCCTACTGCTTGCTTCTTGTTTATTTGCTATTGTTG
1 TTTTGTCTTGC-GTTGGTTCTTTCTTGCTGCTTGC-TCTTCTTTATTTGCTATTGATG
* * * * *
762630 TTTTGTCTTACCGTAGGTTCTTTCTTGCTACTTGCTCTTCTTTGTTTGCTGTTGATG
1 TTTTGTCTT-GCGTTGGTTCTTTCTTGCTGCTTGCTCTTCTTTATTTGCTATTGATG
* *
762687 TTTTGTCTTGTCATTGGTTCTTTCTTGTTGCTTGCTCTT
1 TTTTGTCTTG-CGTTGGTTCTTTCTTGCTGCTTGCTCTT
762726 GCTGGTGTTT
Statistics
Matches: 80, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
57 51 0.64
58 28 0.35
59 1 0.01
ACGTcount: A:0.05, C:0.18, G:0.19, T:0.58
Consensus pattern (56 bp):
TTTTGTCTTGCGTTGGTTCTTTCTTGCTGCTTGCTCTTCTTTATTTGCTATTGATG
Found at i:765731 original size:19 final size:19
Alignment explanation
Indices: 765690--765731 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
765680 TATTGATCCC
*
765690 AAATGTTAAATACATCATT
1 AAATGTTAAATACATCATG
*
765709 AAATGTTCAATAC-TACATG
1 AAATGTTAAATACAT-CATG
765728 AAAT
1 AAAT
765732 TTGGGTACAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 1 0.05
19 19 0.95
ACGTcount: A:0.48, C:0.12, G:0.07, T:0.33
Consensus pattern (19 bp):
AAATGTTAAATACATCATG
Found at i:766701 original size:20 final size:20
Alignment explanation
Indices: 766657--766730 Score: 76
Period size: 21 Copynumber: 3.6 Consensus size: 20
766647 TGCTACAATT
* * *
766657 TGTATCGATATAAACAGTAAA
1 TGTATCGATACATA-AGTGAA
766678 TGTATCGATACATAAGTGAA
1 TGTATCGATACATAAGTGAA
***
766698 TGTATCGATACATGCTTGAAA
1 TGTATCGATACATAAGTG-AA
766719 TGTATCGATACA
1 TGTATCGATACA
766731 AAACCACCTT
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
20 20 0.43
21 26 0.57
ACGTcount: A:0.39, C:0.12, G:0.18, T:0.31
Consensus pattern (20 bp):
TGTATCGATACATAAGTGAA
Found at i:772127 original size:19 final size:19
Alignment explanation
Indices: 772080--772165 Score: 67
Period size: 19 Copynumber: 4.7 Consensus size: 19
772070 ATTTCAACAA
*
772080 TTTGTATCGATACAAACAGT
1 TTTGTATCGATACATA-AGT
**
772100 AAATGTATCGATACATAAGT
1 -TTTGTATCGATACATAAGT
772120 TTTGTATCGATAC--AA--
1 TTTGTATCGATACATAAGT
772135 --TGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
* *
772152 GTTGTATCAATACA
1 TTTGTATCGATACA
772166 ATGTATCGCT
Statistics
Matches: 53, Mismatches: 6, Indels: 14
0.73 0.08 0.19
Matches are distributed among these distances:
13 11 0.21
15 2 0.04
17 2 0.04
19 22 0.42
20 3 0.06
21 13 0.25
ACGTcount: A:0.37, C:0.13, G:0.15, T:0.35
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:772140 original size:13 final size:13
Alignment explanation
Indices: 772122--772146 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
772112 ACATAAGTTT
772122 TGTATCGATACAA
1 TGTATCGATACAA
772135 TGTATCGATACA
1 TGTATCGATACA
772147 TAAGTGTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:772142 original size:32 final size:32
Alignment explanation
Indices: 772101--772178 Score: 129
Period size: 32 Copynumber: 2.4 Consensus size: 32
772091 ACAAACAGTA
* *
772101 AATGTATCGATACATAAGTTTTGTATCGATAC
1 AATGTATCGATACATAAGTGTTGTATCAATAC
772133 AATGTATCGATACATAAGTGTTGTATCAATAC
1 AATGTATCGATACATAAGTGTTGTATCAATAC
*
772165 AATGTATCGCTACA
1 AATGTATCGATACA
772179 AAGCTACTGC
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 43 1.00
ACGTcount: A:0.36, C:0.14, G:0.15, T:0.35
Consensus pattern (32 bp):
AATGTATCGATACATAAGTGTTGTATCAATAC
Found at i:772220 original size:20 final size:20
Alignment explanation
Indices: 772195--772249 Score: 92
Period size: 20 Copynumber: 2.8 Consensus size: 20
772185 CTGCCAAGGA
772195 AATGTATCGATACATTACTC
1 AATGTATCGATACATTACTC
* *
772215 AATGTATCAATACATTATTC
1 AATGTATCGATACATTACTC
772235 AATGTATCGATACAT
1 AATGTATCGATACAT
772250 GCACGTAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.38, C:0.16, G:0.09, T:0.36
Consensus pattern (20 bp):
AATGTATCGATACATTACTC
Found at i:776063 original size:20 final size:19
Alignment explanation
Indices: 776040--776113 Score: 103
Period size: 20 Copynumber: 3.7 Consensus size: 19
776030 AAAAAGATAG
776040 AATGTATCGATACATTGAA
1 AATGTATCGATACATTGAA
*
776059 GAATGTATCGATACATTCATA
1 -AATGTATCGATACATTGA-A
*
776080 CATGTATCGATACATTGGAA
1 AATGTATCGATACATT-GAA
776100 AATGTATCGATACA
1 AATGTATCGATACA
776114 ACTAGGAAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
20 46 0.96
21 2 0.04
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.31
Consensus pattern (19 bp):
AATGTATCGATACATTGAA
Found at i:777068 original size:28 final size:28
Alignment explanation
Indices: 776977--777214 Score: 253
Period size: 28 Copynumber: 8.2 Consensus size: 28
776967 TTTTTTAAAA
*
776977 AAAAAGTGCCACTAACTTATGTGGGCTTTG
1 AAAAGGTGCCACTAAC-T-TGTGGGCTTTG
777007 AAAAGAGTTGCCACTAACTTGTGTGGGCTTTG
1 AAAAG-G-TGCCACTAAC-T-TGTGGGCTTTG
**
777039 AAAAGGTGCCACCGACTTGTGGGCTTTG
1 AAAAGGTGCCACTAACTTGTGGGCTTTG
* *
777067 AAAGGGTATGCCACTGACTTGTGGGCTTTG
1 AAAAGG--TGCCACTAACTTGTGGGCTTTG
** *
777097 AAGGGAGTACCACTAACTTGTGGGCTTTG
1 AAAAG-GTGCCACTAACTTGTGGGCTTTG
* *
777126 AAAGGGTGCCATTAACTTGTGGGCTTTG
1 AAAAGGTGCCACTAACTTGTGGGCTTTG
*
777154 AAAGGGTGCCACTAACTTGTGGGCTTTG
1 AAAAGGTGCCACTAACTTGTGGGCTTTG
* * *
777182 -AAAGGATGCCACTGACCTGTGGGCTTTA
1 AAAAGG-TGCCACTAACTTGTGGGCTTTG
777210 AAAAG
1 AAAAG
777215 TTGAATGTTC
Statistics
Matches: 184, Mismatches: 17, Indels: 15
0.85 0.08 0.07
Matches are distributed among these distances:
27 4 0.02
28 83 0.45
29 29 0.16
30 37 0.20
31 3 0.02
32 28 0.15
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (28 bp):
AAAAGGTGCCACTAACTTGTGGGCTTTG
Found at i:778500 original size:24 final size:24
Alignment explanation
Indices: 778464--778509 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
778454 TTTTTGTTTT
* *
778464 TTTTTTTTGTTTTTTTGCTTTTGG
1 TTTTTTCTATTTTTTTGCTTTTGG
*
778488 TTTTTTCTATTTTTTTGTTTTT
1 TTTTTTCTATTTTTTTGCTTTT
778510 TTTTTGTTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.02, C:0.04, G:0.11, T:0.83
Consensus pattern (24 bp):
TTTTTTCTATTTTTTTGCTTTTGG
Found at i:778535 original size:32 final size:31
Alignment explanation
Indices: 778463--778534 Score: 85
Period size: 29 Copynumber: 2.3 Consensus size: 31
778453 ATTTTTGTTT
778463 TTTTTTTTTGTTTTTTTGCTTTTGGTTTTTTC
1 TTTTTTTTTGTTTTTTT-CTTTTGGTTTTTTC
* *
778495 TATTTTTTTG-TTTTTT-TTTTGTTTTTTTC
1 TTTTTTTTTGTTTTTTTCTTTTGGTTTTTTC
778524 TTGGTTTTTTT
1 TT--TTTTTTT
778535 TTGTACGAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
29 13 0.37
31 13 0.37
32 9 0.26
ACGTcount: A:0.01, C:0.04, G:0.11, T:0.83
Consensus pattern (31 bp):
TTTTTTTTTGTTTTTTTCTTTTGGTTTTTTC
Found at i:778536 original size:43 final size:43
Alignment explanation
Indices: 778453--778533 Score: 125
Period size: 43 Copynumber: 2.0 Consensus size: 43
778443 ATCTAGACCC
778453 ATTTTTGTTTTTTTTTTTTGTTTTTTTGCTTTTGGTTTTTTCT
1 ATTTTTGTTTTTTTTTTTTGTTTTTTTGCTTTTGGTTTTTTCT
778496 ATTTTT-TTGTTTTTTTTTTGTTTTTTT-C--TTGGTTTTTT
1 ATTTTTGTT-TTTTTTTTTTGTTTTTTTGCTTTTGGTTTTTT
778534 TTTGTACGAA
Statistics
Matches: 37, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
40 10 0.27
42 3 0.08
43 24 0.65
ACGTcount: A:0.02, C:0.04, G:0.11, T:0.83
Consensus pattern (43 bp):
ATTTTTGTTTTTTTTTTTTGTTTTTTTGCTTTTGGTTTTTTCT
Found at i:795556 original size:75 final size:76
Alignment explanation
Indices: 795470--795898 Score: 366
Period size: 75 Copynumber: 5.6 Consensus size: 76
795460 TCCTTGAGAT
* * * * * * *
795470 GAAAATTTTAATATTTTTGAAATAAGAATGGGGTTGTAGTATCCCCTTGAAAATAACAAGATTGG
1 GAAAAATTTAATATTTTTGAAATAAAAACGGGGTTGGAGTATCCCCTTGAAATTAACAGGGTTGG
795535 AGTA-CCCCAA
66 AGTATCCCCAA
* * * **
795545 GAAAAATTTAATATTTTAGAAATAAAAACGGGGTTGGAGTAT-CCCTTGGAATTGATGGGGTTGG
1 GAAAAATTTAATATTTTTGAAATAAAAACGGGGTTGGAGTATCCCCTTGAAATTAACAGGGTTGG
*
795609 AGTATCCCTAA
66 AGTATCCCCAA
** * * * *
795620 GATGAAAATTTTAATA-TTTTGAAAATAAAAACAAGGTTTGAATATCCCCTCGAAAATAACAGGG
1 GA--AAAA-TTTAATATTTTTG-AAATAAAAACGGGGTTGGAGTATCCCCTTGAAATTAACAGGG
*
795684 TTGGAGTATCCCTAA
62 TTGGAGTATCCCCAA
* ** ** * * * * *
795699 -AAAAATTTAATA-TTTTGAAAATAACAGTGGGACTAGAGTATCCCCTCGAAATTGATAAGGTTG
1 GAAAAATTTAATATTTTTG-AAATAAAAACGGGGTTGGAGTATCCCCTTGAAATTAACAGGGTTG
795762 GAGTATCCCCAA
65 GAGTATCCCCAA
* * * * *
795774 GATGAAAATTTTAATATTTTGGAAATAAAAATGGAGTTGGAGTATCCCC-TCAGAATTAACGGGG
1 GA--AAAA-TTTAATATTTTTGAAATAAAAACGGGGTTGGAGTATCCCCTTGA-AATTAACAGGG
* *
795838 TTCGAGTATCCTCAA
62 TTGGAGTATCCCCAA
* * * *
795853 GAAAAATTTAATATTTTGGAAATAAGAACGAGATTGGAGTATCCCC
1 GAAAAATTTAATATTTTTGAAATAAAAACGGGGTTGGAGTATCCCC
795899 AAGATAAAAA
Statistics
Matches: 284, Mismatches: 58, Indels: 23
0.78 0.16 0.06
Matches are distributed among these distances:
74 19 0.07
75 100 0.35
76 40 0.14
77 12 0.04
78 32 0.11
79 77 0.27
80 4 0.01
ACGTcount: A:0.38, C:0.12, G:0.20, T:0.30
Consensus pattern (76 bp):
GAAAAATTTAATATTTTTGAAATAAAAACGGGGTTGGAGTATCCCCTTGAAATTAACAGGGTTGG
AGTATCCCCAA
Found at i:795675 original size:153 final size:151
Alignment explanation
Indices: 795448--795897 Score: 519
Period size: 154 Copynumber: 2.9 Consensus size: 151
795438 CTCGGAATAC
* * * *
795448 GGGGTTGGAGTATCCTTGAGATGAAAATTTTAATATTTTTGAAATAAGAATGGGGTTGTAGTATC
1 GGGGTTGGAGTATCCCTAAGATGAAAATTTTAATA-TTTTGAAATAAAAATGGGTTTG-AGTATC
* * *
795513 CCCTTGAAAATAACAAGATTGGAGTA-CCCCAAGAAAAATTTAATATTTTAGAAATAAAAACGGG
64 CCCTCGAAAATAACAGGGTTGGAGTATCCCCAAGAAAAATTTAATATTTT-GAAATAAAAACGGG
* * *
795577 GTTGGAGTATCCCTTGGAATTGAT
128 ATTGGAGTATCCCTCGAAATTGAT
** *
795601 GGGGTTGGAGTATCCCTAAGATGAAAATTTTAATATTTTGAAAATAAAAACAAGGTTTGAATATC
1 GGGGTTGGAGTATCCCTAAGATGAAAATTTTAATATTTTG-AAATAAAAA-TGGGTTTGAGTATC
* * **
795666 CCCTCGAAAATAACAGGGTTGGAGTATCCCTAA-AAAAATTTAATATTTTGAAAATAACAGTGGG
64 CCCTCGAAAATAACAGGGTTGGAGTATCCCCAAGAAAAATTTAATATTTTG-AAATAAAAACGGG
* *
795730 ACTAGAGTATCCCCTCGAAATTGAT
128 ATTGGAGTAT-CCCTCGAAATTGAT
** * *
795755 AAGGTTGGAGTATCCCCAAGATGAAAATTTTAATATTTTGGAAATAAAAATGGAGTTGGAGTATC
1 GGGGTTGGAGTATCCCTAAGATGAAAATTTTAATATTTT-GAAATAAAAATGG-GTTTGAGTATC
* * * * * *
795820 CCCTC-AGAATTAACGGGGTTCGAGTATCCTCAAGAAAAATTTAATATTTTGGAAATAAGAACGA
64 CCCTCGA-AAATAACAGGGTTGGAGTATCCCCAAGAAAAATTTAATATTTT-GAAATAAAAACGG
795884 GATTGGAGTATCCC
127 GATTGGAGTATCCC
795898 CAAGATAAAA
Statistics
Matches: 250, Mismatches: 37, Indels: 19
0.82 0.12 0.06
Matches are distributed among these distances:
152 6 0.02
153 104 0.42
154 105 0.42
155 34 0.14
156 1 0.00
ACGTcount: A:0.37, C:0.12, G:0.21, T:0.30
Consensus pattern (151 bp):
GGGGTTGGAGTATCCCTAAGATGAAAATTTTAATATTTTGAAATAAAAATGGGTTTGAGTATCCC
CTCGAAAATAACAGGGTTGGAGTATCCCCAAGAAAAATTTAATATTTTGAAATAAAAACGGGATT
GGAGTATCCCTCGAAATTGAT
Found at i:795820 original size:154 final size:154
Alignment explanation
Indices: 795450--795897 Score: 503
Period size: 153 Copynumber: 2.9 Consensus size: 154
795440 CGGAATACGG
* * * * * *
795450 GGTTGGAGTATCCTTGAGATGAAAATTTTAATATTTTTGAAATAAGAATGGGGTTGTAGTATCCC
1 GGTTGGAGTATCCCTAAGATGAAAATTTTAATATTTTGGAAATAAAAATGGAGTTGGAGTATCCC
* * * * *
795515 CTTGAAAATAACAAGATTGGAGTA-CCCCAAGAAAAATTTAATATTTT-AGAAATAAAAACGGGG
66 CTCGAAAATAACAGGGTTGGAGTATCCCTAAGAAAAATTTAATATTTTGA-AAATAAAAACGGGA
* * * * **
795578 TTGGAGTATCCCTTGGAATTGATGG
130 CTAGAGTATCCCTCGAAATTGATAA
* ** * *
795603 GGTTGGAGTATCCCTAAGATGAAAATTTTAATATTTTGAAAATAAAAA-CAAGGTTTGAATATCC
1 GGTTGGAGTATCCCTAAGATGAAAATTTTAATATTTTGGAAATAAAAATGGA-GTTGGAGTATCC
* **
795667 CCTCGAAAATAACAGGGTTGGAGTATCCCTAA-AAAAATTTAATATTTTGAAAATAACAGTGGGA
65 CCTCGAAAATAACAGGGTTGGAGTATCCCTAAGAAAAATTTAATATTTTGAAAATAAAAACGGGA
795731 CTAGAGTATCCCCTCGAAATTGATAA
130 CTAGAGTAT-CCCTCGAAATTGATAA
*
795757 GGTTGGAGTATCCCCAAGATGAAAATTTTAATATTTTGGAAATAAAAATGGAGTTGGAGTATCCC
1 GGTTGGAGTATCCCTAAGATGAAAATTTTAATATTTTGGAAATAAAAATGGAGTTGGAGTATCCC
* * * * * *
795822 CTC-AGAATTAACGGGGTTCGAGTAT-CCTCAAGAAAAATTTAATATTTTGGAAATAAGAACGAG
66 CTCGA-AAATAACAGGGTTGGAGTATCCCT-AAGAAAAATTTAATATTTTGAAAATAAAAACGGG
* *
795885 ATTGGAGTATCCC
129 ACTAGAGTATCCC
795898 CAAGATAAAA
Statistics
Matches: 246, Mismatches: 41, Indels: 15
0.81 0.14 0.05
Matches are distributed among these distances:
153 111 0.45
154 100 0.41
155 35 0.14
ACGTcount: A:0.38, C:0.12, G:0.21, T:0.30
Consensus pattern (154 bp):
GGTTGGAGTATCCCTAAGATGAAAATTTTAATATTTTGGAAATAAAAATGGAGTTGGAGTATCCC
CTCGAAAATAACAGGGTTGGAGTATCCCTAAGAAAAATTTAATATTTTGAAAATAAAAACGGGAC
TAGAGTATCCCTCGAAATTGATAA
Found at i:795903 original size:127 final size:130
Alignment explanation
Indices: 795759--796028 Score: 341
Period size: 127 Copynumber: 2.1 Consensus size: 130
795749 ATTGATAAGG
* ** * * *
795759 TTGGAGTATCCCCAAGATGAAAATTTTAATATTTTGGAAATAAAAATGGAGTTGGAGTATCCCCT
1 TTGGAGTATCCCCAAGATAAAAAAATTAATATTTTGAAAATAAAAATGGAGTTAGAGTATCCCAT
* *
795824 CAGAATTAACGGGGTTCG-AGTATCCTC-A-A-GAAAAATTTAATATTTTGGAAATAAGAACGAG
66 CAGAATTAACAGGGTT-GTAGTATCCTCGAGATGAAAAATTTAATATTTTGGAAATAAAAACGAG
795885 A
130 A
* *
795886 TTGGAGTATCCCCAAGATAAAAAAATTAATATTTTGAAAATAAAAATGGGGTTAGAGTATCCTAT
1 TTGGAGTATCCCCAAGATAAAAAAATTAATATTTTGAAAATAAAAATGGAGTTAGAGTATCCCAT
* * * * * * * *
795951 CAGAATTGATAGGGTTGTAGTATCTTCGAGATGAACATTTTAATATTTTTGAAATAAAAACGGGG
66 CAGAATTAACAGGGTTGTAGTATCCTCGAGATGAAAAATTTAATATTTTGGAAATAAAAACGAGA
796016 TTGGAGTATCCCC
1 TTGGAGTATCCCC
796029 TTAAAAACAA
Statistics
Matches: 121, Mismatches: 18, Indels: 5
0.84 0.12 0.03
Matches are distributed among these distances:
126 1 0.01
127 78 0.64
128 1 0.01
129 1 0.01
130 40 0.33
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (130 bp):
TTGGAGTATCCCCAAGATAAAAAAATTAATATTTTGAAAATAAAAATGGAGTTAGAGTATCCCAT
CAGAATTAACAGGGTTGTAGTATCCTCGAGATGAAAAATTTAATATTTTGGAAATAAAAACGAGA
Found at i:795944 original size:51 final size:48
Alignment explanation
Indices: 795831--795947 Score: 126
Period size: 51 Copynumber: 2.4 Consensus size: 48
795821 CCTCAGAATT
* * * * *
795831 AACGGGGTTCGAGTATCCTCAAGAAAAATTTAATATTTTGGAAATAAG
1 AACGGGGTTAGAGTATCCCCAAGAAAAAATTAATATTTTGAAAATAAA
* * *
795879 AACGAGATTGGAGTATCCCCAAGATAAAAAAATTAATATTTTGAAAATAAA
1 AACGGGGTTAGAGTATCCCCAAG---AAAAAATTAATATTTTGAAAATAAA
*
795930 AATGGGGTTAGAGTATCC
1 AACGGGGTTAGAGTATCC
795948 TATCAGAATT
Statistics
Matches: 55, Mismatches: 11, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
48 19 0.35
51 36 0.65
ACGTcount: A:0.43, C:0.10, G:0.20, T:0.27
Consensus pattern (48 bp):
AACGGGGTTAGAGTATCCCCAAGAAAAAATTAATATTTTGAAAATAAA
Found at i:798485 original size:22 final size:20
Alignment explanation
Indices: 798436--798491 Score: 76
Period size: 20 Copynumber: 2.7 Consensus size: 20
798426 CAAAACCCAG
798436 AATGTATCGATACAATGAGA
1 AATGTATCGATACAATGAGA
* *
798456 AATGTATCGATACAATTATA
1 AATGTATCGATACAATGAGA
798476 AGCATGTATCGATACA
1 A--ATGTATCGATACA
798492 TTTCCTTGGC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 19 0.59
22 13 0.41
ACGTcount: A:0.43, C:0.12, G:0.16, T:0.29
Consensus pattern (20 bp):
AATGTATCGATACAATGAGA
Found at i:799317 original size:12 final size:11
Alignment explanation
Indices: 799288--799329 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
799278 TTAGATATAA
*
799288 AAATAAAATAT
1 AAATATAATAT
799299 AAATATAATAT
1 AAATATAATAT
*
799310 GTAATAT-ATAT
1 -AAATATAATAT
799321 AAATATAAT
1 AAATATAAT
799330 TAATATTAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
10 5 0.19
11 16 0.62
12 5 0.19
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (11 bp):
AAATATAATAT
Found at i:799373 original size:35 final size:32
Alignment explanation
Indices: 799328--799420 Score: 93
Period size: 31 Copynumber: 2.8 Consensus size: 32
799318 TATAAATATA
799328 ATTAATATTAACATATTTAATAAATTTATTATTTTT
1 ATTAATATTAACATA-TT-ATAAATTTA--ATTTTT
*
799364 ATTAA-ATTAACATATTATATATTTAATTTTT
1 ATTAATATTAACATATTATAAATTTAATTTTT
* *
799395 ATT-ATATTTATAT-TTATATAATTTAA
1 ATTAATATTAACATATTATA-AATTTAA
799421 AAAATATAAA
Statistics
Matches: 51, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
30 6 0.12
31 21 0.41
33 8 0.16
34 2 0.04
35 9 0.18
36 5 0.10
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (32 bp):
ATTAATATTAACATATTATAAATTTAATTTTT
Found at i:801557 original size:24 final size:23
Alignment explanation
Indices: 801517--801561 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
801507 GTTTTATTTT
*
801517 TAAAAAAAATTATAATTTAAAAA
1 TAAAAAAAATTAAAATTTAAAAA
*
801540 TAAATAAATATTAAAATTTAAA
1 TAAA-AAAAATTAAAATTTAAA
801562 TATTAAATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 4 0.21
24 15 0.79
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (23 bp):
TAAAAAAAATTAAAATTTAAAAA
Found at i:801584 original size:14 final size:16
Alignment explanation
Indices: 801544--801597 Score: 55
Period size: 14 Copynumber: 3.7 Consensus size: 16
801534 TAAAAATAAA
*
801544 TAAATATTAAA-AT-T
1 TAAATATTAAATTTAT
801558 TAAATATTAAATTTAT
1 TAAATATTAAATTTAT
*
801574 TAAATA-T-AATTTTT
1 TAAATATTAAATTTAT
801588 TAAA-ATTAAA
1 TAAATATTAAA
801598 AATATAAAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
13 1 0.03
14 22 0.65
15 4 0.12
16 7 0.21
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (16 bp):
TAAATATTAAATTTAT
Found at i:802650 original size:16 final size:16
Alignment explanation
Indices: 802572--802650 Score: 61
Period size: 16 Copynumber: 4.9 Consensus size: 16
802562 TTGAGATGAT
*
802572 AAATAAGTTTAAACTTCA
1 AAATAA-TTTAAA-TTAA
* *
802590 AAA-GATTTAAATTCA
1 AAATAATTTAAATTAA
* * *
802605 AAATGATTTGAACTAA
1 AAATAATTTAAATTAA
**
802621 AAATAATTCGAATTAA
1 AAATAATTTAAATTAA
802637 AAATAATTTAAATT
1 AAATAATTTAAATT
802651 GTAAATCGAT
Statistics
Matches: 51, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
15 7 0.14
16 40 0.78
17 1 0.02
18 3 0.06
ACGTcount: A:0.53, C:0.06, G:0.06, T:0.34
Consensus pattern (16 bp):
AAATAATTTAAATTAA
Found at i:804987 original size:18 final size:18
Alignment explanation
Indices: 804933--804990 Score: 55
Period size: 18 Copynumber: 3.0 Consensus size: 18
804923 AAAAAAGTGT
804933 AAATAAAAA-AATAATATA
1 AAATAAAAATAATAA-ATA
*
804951 ACATAAATATATAACATAAATA
1 AAATAAA-A-AT-A-ATAAATA
804973 AAATAAAAATAATAAATA
1 AAATAAAAATAATAAATA
804991 TTCAGATCTT
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
18 13 0.39
19 2 0.06
20 3 0.09
21 1 0.03
22 10 0.30
23 4 0.12
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.24
Consensus pattern (18 bp):
AAATAAAAATAATAAATA
Found at i:805710 original size:18 final size:18
Alignment explanation
Indices: 805687--805725 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
805677 TTGGTGTGAG
805687 ATTATTATATATTGCTAA
1 ATTATTATATATTGCTAA
805705 ATTATTATATATTGCTAA
1 ATTATTATATATTGCTAA
805723 ATT
1 ATT
805726 GGAGATGTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.38, C:0.05, G:0.05, T:0.51
Consensus pattern (18 bp):
ATTATTATATATTGCTAA
Found at i:805972 original size:145 final size:148
Alignment explanation
Indices: 805746--806320 Score: 612
Period size: 145 Copynumber: 3.8 Consensus size: 148
805736 AATTATTGTT
*
805746 ATGTGATTTGTTTGCTGTTGTAAGTTTTTTAGTTTATAATAT--T-AT--T-ATT-TTA--ATGT
1 ATGTGATTTGTTTGC-GTTGTAGGTTTTTTA-TTTATAATATAATAATAATAATTATTATTATGT
* *
805802 TTAAAATTATAATAAGATTGTTAAAGTTA-TTTCTATTGATGTAATATATATATATTGTAAATTA
64 TCAAAATTATAATAAGATTGTTAAAGTTATTTTCTATTGGTGT-ATATATATATATTGTAAATTA
805866 TTATTAATG-TTGCTGTTGAC
128 TTATTAATGTTTGCTGTTGAC
* * *
805886 ATGTGATTTGTTTGCGTTGTAGGTTTTTT-TTTATAATATAA-GATAATAATTAGTATTATGTTT
1 ATGTGATTTGTTTGCGTTGTAGGTTTTTTATTTATAATATAATAATAATAATTATTATTATGTTC
* *
805949 AAAATTATAATAAGATTGTTAAAGTTATTTTCTATTGGTGTATATATATATATTGTAACTTAATA
66 AAAATTATAATAAGATTGTTAAAGTTATTTTCTATTGGTGTATATATATATATTGTAAATTATTA
806014 TTAATGTTTGCTGTTGAC
131 TTAATGTTTGCTGTTGAC
* * * *
806032 ATGTGATTT-ATTGCTATTGTATGTTTTGTTTAGTTTAAATTAATAATAATAATTTATTATTATT
1 ATGTGATTTGTTTGC-GTTGTA-GGTTT-TTTA-TTT--A-TAAT-ATAATAA--TA--A-TA-A
* *
806096 TTATTTTATTATGTTCAACAATTCTAATAA-ATTGTTGAAGTTATTTTCTATTGGTGTATATATA
52 TTA--TTATTATGTTCAA-AATTATAATAAGATTGTTAAAGTTATTTTCTATTGGTGTATATATA
806160 TAATATTTGATAAATTATTATTAATGTTTGCTGTTGAC
114 T-ATA-TTG-TAAATTATTATTAATGTTTGCTGTTGAC
* * * * *
806198 ATGTGATTTGTTT-TGTTGCTA-GTTTTTTATATATAATATAATTATTATTATTATTATTAATGT
1 ATGTGATTTGTTTGCGTTG-TAGGTTTTTTATTTATAATATAATAATAATAATTATTATT-ATGT
*
806261 TCAAAATTATAATAAGATTATTAAAGTTATTTTCTATTGGTG--TATATATATATTGTAAAT
64 TCAAAATTATAATAAGATTGTTAAAGTTATTTTCTATTGGTGTATATATATATATTGTAAAT
806321 ACTTACAAAA
Statistics
Matches: 370, Mismatches: 28, Indels: 68
0.79 0.06 0.15
Matches are distributed among these distances:
137 10 0.03
139 15 0.04
140 15 0.04
141 1 0.00
142 3 0.01
143 2 0.01
145 65 0.18
146 42 0.11
147 7 0.02
148 6 0.02
149 7 0.02
150 18 0.05
151 32 0.09
152 4 0.01
153 5 0.01
154 5 0.01
155 1 0.00
156 1 0.00
157 2 0.01
158 6 0.02
159 5 0.01
160 3 0.01
161 3 0.01
162 2 0.01
163 49 0.13
164 16 0.04
165 6 0.02
166 37 0.10
167 2 0.01
ACGTcount: A:0.32, C:0.03, G:0.13, T:0.52
Consensus pattern (148 bp):
ATGTGATTTGTTTGCGTTGTAGGTTTTTTATTTATAATATAATAATAATAATTATTATTATGTTC
AAAATTATAATAAGATTGTTAAAGTTATTTTCTATTGGTGTATATATATATATTGTAAATTATTA
TTAATGTTTGCTGTTGAC
Found at i:808380 original size:22 final size:22
Alignment explanation
Indices: 808355--808399 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
808345 TGCTGGGAAC
808355 AAAAG-AACTAACAGAAAAAAAA
1 AAAAGAAACTAA-AGAAAAAAAA
*
808377 AAAAGAAATTAAAGAAAAAAAA
1 AAAAGAAACTAAAGAAAAAAAA
808399 A
1 A
808400 TAAAATTTAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 16 0.76
23 5 0.24
ACGTcount: A:0.80, C:0.04, G:0.09, T:0.07
Consensus pattern (22 bp):
AAAAGAAACTAAAGAAAAAAAA
Found at i:809705 original size:24 final size:21
Alignment explanation
Indices: 809678--809721 Score: 61
Period size: 24 Copynumber: 2.0 Consensus size: 21
809668 CAGTAGATGA
809678 CGAAGAAATGAGGAAGGAGAAGGG
1 CGAAGAAA--AGGAAGG-GAAGGG
809702 CGAAGAAAAGGAAGGGAAGG
1 CGAAGAAAAGGAAGGGAAGG
809722 AAAAGGGATG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 5 0.25
22 7 0.35
24 8 0.40
ACGTcount: A:0.48, C:0.05, G:0.45, T:0.02
Consensus pattern (21 bp):
CGAAGAAAAGGAAGGGAAGGG
Found at i:810114 original size:34 final size:33
Alignment explanation
Indices: 810066--810133 Score: 109
Period size: 34 Copynumber: 2.0 Consensus size: 33
810056 TACCCTTTCC
*
810066 CTCTCCTGCATTATGTTTACCTTACCCCAACTCT
1 CTCTCCTGCATTATGTTTACCTTA-CACAACTCT
*
810100 CTCTTCTGCATTATGTTTACCTTACACAACTCT
1 CTCTCCTGCATTATGTTTACCTTACACAACTCT
810133 C
1 C
810134 CATATATTCA
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 9 0.28
34 23 0.72
ACGTcount: A:0.19, C:0.35, G:0.06, T:0.40
Consensus pattern (33 bp):
CTCTCCTGCATTATGTTTACCTTACACAACTCT
Found at i:810209 original size:46 final size:46
Alignment explanation
Indices: 810168--810293 Score: 225
Period size: 46 Copynumber: 2.7 Consensus size: 46
810158 TTTACCACAT
*
810168 CCAACTCTCTTTCATGTATTACTCTCATACATTAAAATTACCTTAC
1 CCAAATCTCTTTCATGTATTACTCTCATACATTAAAATTACCTTAC
*
810214 CCAAATCTCTTTCATGTATTACTCTCATACATTAAGATTACCTTAC
1 CCAAATCTCTTTCATGTATTACTCTCATACATTAAAATTACCTTAC
*
810260 CCAAATCTCTTTCATGTATTACTCTCATGCATTA
1 CCAAATCTCTTTCATGTATTACTCTCATACATTA
810294 CGATGATCGA
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 77 1.00
ACGTcount: A:0.29, C:0.27, G:0.04, T:0.40
Consensus pattern (46 bp):
CCAAATCTCTTTCATGTATTACTCTCATACATTAAAATTACCTTAC
Found at i:811903 original size:17 final size:18
Alignment explanation
Indices: 811865--811905 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
811855 AAAATTCAAA
811865 CCCAACATCAAATTTGGG
1 CCCAACATCAAATTTGGG
811883 CCCAACATCAAATTT-GG
1 CCCAACATCAAATTTGGG
811900 CCCAAC
1 CCCAAC
811906 TCATAGCCCA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 8 0.35
18 15 0.65
ACGTcount: A:0.34, C:0.34, G:0.12, T:0.20
Consensus pattern (18 bp):
CCCAACATCAAATTTGGG
Found at i:813282 original size:26 final size:27
Alignment explanation
Indices: 813222--813285 Score: 78
Period size: 26 Copynumber: 2.3 Consensus size: 27
813212 ATCGAAAGAG
*
813222 AATATTATTTAAACTTTAAAATAAGTAA
1 AATATT-TTTAAACTTTAAAATAAATAA
813250 AATTATTTTTAAA-TTTAAAA-AAATAA
1 AA-TATTTTTAAACTTTAAAATAAATAA
813276 TAATATTTTT
1 -AATATTTTT
813286 TTAATATTAA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
26 12 0.36
27 9 0.27
28 8 0.24
29 4 0.12
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.45
Consensus pattern (27 bp):
AATATTTTTAAACTTTAAAATAAATAA
Found at i:813285 original size:27 final size:27
Alignment explanation
Indices: 813222--813308 Score: 79
Period size: 27 Copynumber: 3.1 Consensus size: 27
813212 ATCGAAAGAG
* *
813222 AATATTATTTAAACTTTAAAATAAGTAA
1 AATATTTTTTAAA-TTTAAAATAAATAA
813250 AAT-TATTTTTAAATTTAAAA-AAATAA
1 AATAT-TTTTTAAATTTAAAATAAATAA
* *
813276 TAATATTTTTTTAATATTAAAATCAAATTA
1 -AATATTTTTTAAAT-TTAAAAT-AAATAA
813306 AAT
1 AAT
813309 CTAATGTGGT
Statistics
Matches: 49, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
26 5 0.10
27 19 0.39
28 17 0.35
29 3 0.06
30 5 0.10
ACGTcount: A:0.53, C:0.02, G:0.01, T:0.44
Consensus pattern (27 bp):
AATATTTTTTAAATTTAAAATAAATAA
Found at i:813286 original size:28 final size:30
Alignment explanation
Indices: 813239--813297 Score: 79
Period size: 28 Copynumber: 2.0 Consensus size: 30
813229 TTTAAACTTT
813239 AAAATAAGTAAAATTATTTTTAA-ATTTAAA
1 AAAATAAGTAAAATTATTTTTAATA-TTAAA
*
813269 AAAATAA-TAATATT-TTTTTAATATTAAA
1 AAAATAAGTAAAATTATTTTTAATATTAAA
813297 A
1 A
813298 TCAAATTAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
28 13 0.48
29 7 0.26
30 7 0.26
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (30 bp):
AAAATAAGTAAAATTATTTTTAATATTAAA
Found at i:813712 original size:2 final size:2
Alignment explanation
Indices: 813705--813733 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
813695 AAGAAAGAAA
813705 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
813734 CACACACACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:818869 original size:11 final size:11
Alignment explanation
Indices: 818853--818877 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
818843 TATTGCTAAT
818853 TGGTTTCAAGA
1 TGGTTTCAAGA
818864 TGGTTTCAAGA
1 TGGTTTCAAGA
818875 TGG
1 TGG
818878 ATGCCCATCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.08, G:0.32, T:0.36
Consensus pattern (11 bp):
TGGTTTCAAGA
Found at i:823946 original size:98 final size:99
Alignment explanation
Indices: 823778--823984 Score: 317
Period size: 98 Copynumber: 2.1 Consensus size: 99
823768 TCTACCTCCA
* *
823778 TTTATTTGGTTGGAGATATGTTAATTTTTTTTTAAAAAAAAAATTTAAAGATTCATTGTTATGGC
1 TTTAATTGGTTGGAGATATGTTAATTTTTTTTT-----AAAAATTTAAAGATTAATTGTTATGGC
823843 TTGAATTTCATGGCTTAAGGCAAATTTGATCACTTTCCT
61 TTGAATTTCATGGCTTAAGGCAAATTTGATCACTTTCCT
** *
823882 TTTAATTGGTTGGAGATATGTTAATTTTTTTTT-TTAATTTAAAGATTAATTGTTGTGGCTTGAA
1 TTTAATTGGTTGGAGATATGTTAATTTTTTTTTAAAAATTTAAAGATTAATTGTTATGGCTTGAA
823946 TTTCATGGCTTAAGGCAAATTTGATCACTTTCCT
66 TTTCATGGCTTAAGGCAAATTTGATCACTTTCCT
823980 TTTAA
1 TTTAA
823985 AATTTCATAT
Statistics
Matches: 98, Mismatches: 5, Indels: 6
0.90 0.05 0.06
Matches are distributed among these distances:
98 66 0.67
104 32 0.33
ACGTcount: A:0.29, C:0.08, G:0.16, T:0.47
Consensus pattern (99 bp):
TTTAATTGGTTGGAGATATGTTAATTTTTTTTTAAAAATTTAAAGATTAATTGTTATGGCTTGAA
TTTCATGGCTTAAGGCAAATTTGATCACTTTCCT
Found at i:824316 original size:23 final size:25
Alignment explanation
Indices: 824262--824316 Score: 62
Period size: 23 Copynumber: 2.3 Consensus size: 25
824252 TTGCTGAATC
* *
824262 TTCTTTTAATATTCTTTCATTATTA
1 TTCTTTTTATATTCTTTAATTATTA
*
824287 TTC-TTTTA-ATTCTTTAATT-TTG
1 TTCTTTTTATATTCTTTAATTATTA
824309 TTCTTTTT
1 TTCTTTTT
824317 TGCAGCAGTT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
22 5 0.19
23 14 0.54
24 4 0.15
25 3 0.12
ACGTcount: A:0.18, C:0.11, G:0.02, T:0.69
Consensus pattern (25 bp):
TTCTTTTTATATTCTTTAATTATTA
Found at i:826372 original size:54 final size:54
Alignment explanation
Indices: 826309--826415 Score: 180
Period size: 54 Copynumber: 2.0 Consensus size: 54
826299 GTTTTATTAC
826309 AATTTATTGCTTTTTCTT-CCTTTTCGTGTAACATTTTTTCTTTACTTAATTTCA
1 AATTTATTGCTTTTTCTTCCCTTTTCGTGTAACA-TTTTTCTTTACTTAATTTCA
* *
826363 AATTTATTGCTTTTTTTTCCCTTTTCGTGTAACATTTTTCTTTATTTAATTTC
1 AATTTATTGCTTTTTCTTCCCTTTTCGTGTAACATTTTTCTTTACTTAATTTC
826416 TTCCTTACGG
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
54 35 0.70
55 15 0.30
ACGTcount: A:0.18, C:0.16, G:0.06, T:0.61
Consensus pattern (54 bp):
AATTTATTGCTTTTTCTTCCCTTTTCGTGTAACATTTTTCTTTACTTAATTTCA
Found at i:830117 original size:13 final size:13
Alignment explanation
Indices: 830099--830124 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
830089 ACATTTTATG
830099 ATGTATCGATACA
1 ATGTATCGATACA
830112 ATGTATCGATACA
1 ATGTATCGATACA
830125 CACTGTGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:830840 original size:22 final size:21
Alignment explanation
Indices: 830797--830840 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
830787 TTTTCTTTTC
* *
830797 TCTCCCCCTTAATCAAACATT
1 TCTCCCCCTTAATAAAAAATT
*
830818 TCTCCCCCTTAGTAAAATAATT
1 TCTCCCCCTTAATAAAA-AATT
830840 T
1 T
830841 AACACTTTCG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.30, C:0.32, G:0.02, T:0.36
Consensus pattern (21 bp):
TCTCCCCCTTAATAAAAAATT
Found at i:832706 original size:13 final size:13
Alignment explanation
Indices: 832686--832736 Score: 84
Period size: 13 Copynumber: 3.9 Consensus size: 13
832676 ATAAACCCCT
832686 TGTATCGATACAA
1 TGTATCGATACAA
*
832699 TATATCGATACAA
1 TGTATCGATACAA
832712 TGTATCGATACAA
1 TGTATCGATACAA
*
832725 TGTATCAATACA
1 TGTATCGATACA
832737 GAGAATGCTG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 35 1.00
ACGTcount: A:0.41, C:0.16, G:0.12, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:838937 original size:13 final size:13
Alignment explanation
Indices: 838919--838944 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
838909 ACATTTTATG
838919 ATGTATCGATACA
1 ATGTATCGATACA
838932 ATGTATCGATACA
1 ATGTATCGATACA
838945 CACTGTGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:839075 original size:20 final size:20
Alignment explanation
Indices: 839050--839100 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
839040 ATCCATACAA
*
839050 TGTATCGATACAATGCAATC
1 TGTATCGATACAATGAAATC
* * *
839070 TGTATCGATACATTTAAATG
1 TGTATCGATACAATGAAATC
839090 TGTATCGATAC
1 TGTATCGATAC
839101 TTTTCAGGGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (20 bp):
TGTATCGATACAATGAAATC
Found at i:841722 original size:157 final size:156
Alignment explanation
Indices: 841048--842138 Score: 1044
Period size: 156 Copynumber: 6.9 Consensus size: 156
841038 TACCTAATAC
* ** *
841048 CCCTAAAAGACTTAAAAAGGACTGCA-AAAA-GGATGAATGTATCCTAAATGCCCATCTTC-AGC
1 CCCTAAAGGACTTAAAAA-GACT-CATAAAAGGGATGAACCTATCCTAAATGCCCACCTTCGA-C
*** *** ** * * **
841110 ATAAAAGTGGACCCAACGATGACCTAGGAGTTGATTCTAAAAAATTACAAAAATGCCCTTAAAGG
63 ATAAAAGCAAACCCGGTGACAACCTAGGAGTTG-TTCTAAAAAATTACCAAAATACCCTTAGGGG
*
841175 TAT-ACTTTCGACGTAAAAGTATCTCTACAG
127 TATAACTTT-GACGTAAAAGTATCTCGACAG
* * * **
841205 CCCTAAA-GACTTAAAAAGACTCATAAAAGGGA-CAGACCTATCCTAAATGCCTATCTTCGGTAT
1 CCCTAAAGGACTTAAAAAGACTCATAAAAGGGATGA-ACCTATCCTAAATGCCCACCTTCGACAT
* * * * * *
841268 AAAAGCAGACCCGGTAACGACCTAAGAGCTAT-TTCTATAAAATTACCAAAATGCCCTTAGGAGC
65 AAAAGCAAACCCGGTGACAACCTAGGAG-T-TGTTCTAAAAAATTACCAAAATACCCTTAGG-G-
* ** * * *
841332 ATATAACTTCAACGTAAAAATATCATTGACAA
126 GTATAACTTTGACGTAAAAGTATC-TCGACAG
* *
841364 CCCTAAAGGACTTAAAAA-ACACATAAAAGGGATGAACCTATCATAAATGCCCACCTTCGGACAT
1 CCCTAAAGGACTTAAAAAGACTCATAAAAGGGATGAACCTATCCTAAATGCCCACCTTC-GACAT
* * * * * *
841428 AAAAGCGAATCCTGGTGACAACCTAGGAGTTGGTTCTATAAAATTACAAAAATACCCCTAAGGGT
65 AAAAGC-AAACCCGGTGACAACCTAGGAGTT-GTTCTAAAAAATTACCAAAATACCCTTAGGGGT
*
841493 ATACCTTTGACGTAAAAAGTATCTCGACAG
128 ATAACTTTGACGT-AAAAGTATCTCGACAG
* * *
841523 CCTTAAAGGATTTAAAAAGACTCATAAAAGGGTTGAACCTATCCTAAATGCCCACCTTC-ATCAT
1 CCCTAAAGGACTTAAAAAGACTCATAAAAGGGATGAACCTATCCTAAATGCCCACCTTCGA-CAT
* * * * *
841587 AAAAGCGAACCCGGTGACAACGTAGGAGCTAGGTCTAGAAAATTACCAAAATACCCTTAGGGGTA
65 AAAAGCAAACCCGGTGACAACCTAGGAG-TTGTTCTAAAAAATTACCAAAATACCCTTAGGGGTA
* *
841652 TAACTTTGACGTAAAAGTATCTTGGCAG
129 TAACTTTGACGTAAAAGTATCTCGACAG
* * *
841680 CCTTCAAGGACTTAAAAAGACACATAAAAGGGATGAACCTATCCTAAATGCCCACCTTCGACATA
1 CCCTAAAGGACTTAAAAAGACTCATAAAAGGGATGAACCTATCCTAAATGCCCACCTTCGACATA
* * * *
841745 AAAACAAACCTGGTGATAACCTAGGAGTTGTTCTAAAAAATTACTAAAATGA--CTATAGGGGTA
66 AAAGCAAACCCGGTGACAACCTAGGAGTTGTTCTAAAAAATTACCAAAAT-ACCCT-TAGGGGTA
* * * *
841808 T-ACTTTCAATGTAAAAATATCTCGGCAG
129 TAACTTT-GACGTAAAAGTATCTCGACAG
* * * *
841836 CCTTAAAGGACTTAAAAGGACTCATAAAA-GGATGAACCTATCCTACATGCCCACCTTTGACATA
1 CCCTAAAGGACTTAAAAAGACTCATAAAAGGGATGAACCTATCCTAAATGCCCACCTTCGACATA
* * ** * * * *
841900 AAAACAAACCTGGTGATGACCTAGGAGTTGTTCTAGAAAATTACTAAAATGCCCCTAGGGGTAT-
66 AAAGCAAACCCGGTGACAACCTAGGAGTTGTTCTAAAAAATTACCAAAATACCCTTAGGGGTATA
* *
841964 ACTTTCGACGTAAAAATATCTCGGCAG
131 ACTTT-GACGTAAAAGTATCTCGACAG
* * * *
841991 CCCTAAAGGACTTAAAAGGACTCATAAAAGGGATGAACCTATCCTAAATGCCTAGCTTCGGCATA
1 CCCTAAAGGACTTAAAAAGACTCATAAAAGGGATGAACCTATCCTAAATGCCCACCTTCGACATA
* * * * *
842056 AAAGCAAACTCGGTGACAGCCTAGGACTCGATTTTAAAAAAATTACCAAAATAACCC-TAGGGG-
66 AAAGCAAACCCGGTGACAACCTAGGAGTTG-TTCT-AAAAAATTACCAAAAT-ACCCTTAGGGGT
** *
842119 ATATGTTTGACGCAAAAGTA
128 ATAACTTTGACGTAAAAGTA
842139 CCCGATACCC
Statistics
Matches: 786, Mismatches: 117, Indels: 62
0.81 0.12 0.06
Matches are distributed among these distances:
154 2 0.00
155 159 0.20
156 204 0.26
157 120 0.15
158 99 0.13
159 94 0.12
160 67 0.09
161 41 0.05
ACGTcount: A:0.39, C:0.21, G:0.17, T:0.23
Consensus pattern (156 bp):
CCCTAAAGGACTTAAAAAGACTCATAAAAGGGATGAACCTATCCTAAATGCCCACCTTCGACATA
AAAGCAAACCCGGTGACAACCTAGGAGTTGTTCTAAAAAATTACCAAAATACCCTTAGGGGTATA
ACTTTGACGTAAAAGTATCTCGACAG
Found at i:842002 original size:311 final size:313
Alignment explanation
Indices: 841131--842081 Score: 1154
Period size: 311 Copynumber: 3.0 Consensus size: 313
841121 CCCAACGATG
* * *
841131 ACCTAGGAGTTGATTCTAAAAAATTACAAAAATGCCCTTAAAGGTATACTTTCGACGTAAAAGTA
1 ACCTAGGAGTTG-TTCTAAAAAATTACAAAAATG-ACTTAAGGGTATACTTTCGACGTAAAAATA
* * * * *
841196 TCTCTACAGCCCTAAA-GACTTAAAAAGACTCATAAAAGGGA-CAGACCTATCCTAAATGCCTAT
64 TCTCGACAGCCTTAAAGGACTTAAAAAGACTCATAAAAGGGATGA-ACCTATCCTAAATGCCCAC
* ** * * * *
841259 CTTCGGTATAAAAGCAGACCCGGTAACGACCTAAGAGCTAT-TTCTATAAAATTACCAAAATGCC
128 CTTTGACATAAAAGCAAACCCGGTGACGACCTAGGAGCT-TGTTCTAGAAAATTACCAAAATGCC
* * * *
841323 CTTAGGAGCATATAAC-TTCAACGTAAAAATATCATTGACAACCCTAAAGGACTTAAAAA-ACAC
192 CTTAGG-G-GTATAACTTTCGACGTAAAAATATC-TTGGCAGCCCTAAAGGACTTAAAAAGACAC
* *
841386 ATAAAAGGGATGAACCTATCATAAATGCCCACCTTCGGACATAAAAGCGAATCCTGGTGACA
254 ATAAAAGGGATGAACCTATCCTAAATGCCCACCTTC-GACATAAAAGC-AAACCTGGTGACA
* *
841448 ACCTAGGAGTTGGTTCTATAAAATTACAAAAAT-ACCCCTAAGGGTATACCTTT-GACGTAAAAA
1 ACCTAGGAGTT-GTTCTAAAAAATTACAAAAATGA--CTTAAGGGTATA-CTTTCGACGTAAAAA
* *
841511 GTATCTCGACAGCCTTAAAGGATTTAAAAAGACTCATAAAAGGGTTGAACCTATCCTAAATGCCC
62 -TATCTCGACAGCCTTAAAGGACTTAAAAAGACTCATAAAAGGGATGAACCTATCCTAAATGCCC
* * * * * * *
841576 ACC-TTCATCATAAAAGCGAACCCGGTGACAACGTAGGAGCTAGGTCTAGAAAATTACCAAAATA
126 ACCTTTGA-CATAAAAGCAAACCCGGTGACGACCTAGGAGCTTGTTCTAGAAAATTACCAAAATG
* * *
841640 CCCTTAGGGGTATAACTTT-GACGTAAAAGTATCTTGGCAGCCTTCAAGGACTTAAAAAGACACA
190 CCCTTAGGGGTATAACTTTCGACGTAAAAATATCTTGGCAGCCCTAAAGGACTTAAAAAGACACA
* *
841704 TAAAAGGGATGAACCTATCCTAAATGCCCACCTTCGACATAAAAACAAACCTGGTGATA
255 TAAAAGGGATGAACCTATCCTAAATGCCCACCTTCGACATAAAAGCAAACCTGGTGACA
* * * *
841763 ACCTAGGAGTTGTTCTAAAAAATTACTAAAATGACTATAGGGGTATACTTTCAATGTAAAAATAT
1 ACCTAGGAGTTGTTCTAAAAAATTACAAAAATGACT-TAAGGGTATACTTTCGACGTAAAAATAT
* * *
841828 CTCGGCAGCCTTAAAGGACTTAAAAGGACTCATAAAA-GGATGAACCTATCCTACATGCCCACCT
65 CTCGACAGCCTTAAAGGACTTAAAAAGACTCATAAAAGGGATGAACCTATCCTAAATGCCCACCT
* * * * *
841892 TTGACATAAAAACAAACCTGGTGATGACCTAGGAG-TTGTTCTAGAAAATTACTAAAATGCCCCT
130 TTGACATAAAAGCAAACCCGGTGACGACCTAGGAGCTTGTTCTAGAAAATTACCAAAATGCCCTT
* * *
841956 AGGGGTAT-ACTTTCGACGTAAAAATATCTCGGCAGCCCTAAAGGACTTAAAAGGACTCATAAAA
195 AGGGGTATAACTTTCGACGTAAAAATATCTTGGCAGCCCTAAAGGACTTAAAAAGACACATAAAA
* * *
842020 GGGATGAACCTATCCTAAATGCCTAGCTTCGGCATAAAAGCAAA-CTCGGTGACA
260 GGGATGAACCTATCCTAAATGCCCACCTTCGACATAAAAGCAAACCT-GGTGACA
*
842074 GCCTAGGA
1 ACCTAGGA
842082 CTCGATTTTA
Statistics
Matches: 545, Mismatches: 72, Indels: 40
0.83 0.11 0.06
Matches are distributed among these distances:
310 7 0.01
311 129 0.24
312 49 0.09
313 45 0.08
314 36 0.07
315 23 0.04
316 31 0.06
317 106 0.19
318 25 0.05
319 93 0.17
320 1 0.00
ACGTcount: A:0.39, C:0.21, G:0.17, T:0.23
Consensus pattern (313 bp):
ACCTAGGAGTTGTTCTAAAAAATTACAAAAATGACTTAAGGGTATACTTTCGACGTAAAAATATC
TCGACAGCCTTAAAGGACTTAAAAAGACTCATAAAAGGGATGAACCTATCCTAAATGCCCACCTT
TGACATAAAAGCAAACCCGGTGACGACCTAGGAGCTTGTTCTAGAAAATTACCAAAATGCCCTTA
GGGGTATAACTTTCGACGTAAAAATATCTTGGCAGCCCTAAAGGACTTAAAAAGACACATAAAAG
GGATGAACCTATCCTAAATGCCCACCTTCGACATAAAAGCAAACCTGGTGACA
Found at i:843598 original size:12 final size:12
Alignment explanation
Indices: 843583--843607 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
843573 AAGTTGCTGC
843583 TGGAGCTTCTGT
1 TGGAGCTTCTGT
843595 TGGAGCTTCTGT
1 TGGAGCTTCTGT
843607 T
1 T
843608 ATTGGCTACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.16, G:0.32, T:0.44
Consensus pattern (12 bp):
TGGAGCTTCTGT
Found at i:844395 original size:19 final size:19
Alignment explanation
Indices: 844373--844410 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
844363 TTTCATCGTT
*
844373 TTTTTTTCTTTTCTTTTTC
1 TTTTTTTCTTTTCCTTTTC
*
844392 TTTTTTTTTTTTCCTTTTC
1 TTTTTTTCTTTTCCTTTTC
844411 AAATTTGATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (19 bp):
TTTTTTTCTTTTCCTTTTC
Found at i:848428 original size:42 final size:41
Alignment explanation
Indices: 848376--848502 Score: 100
Period size: 41 Copynumber: 3.1 Consensus size: 41
848366 CATCCTTTCT
*
848376 TTACCTATTGGCTTAGTCCCAAGTAAATCTTTTATCCTCTG
1 TTACTTATTGGCTTAGTCCCAAGTAAATCTTTTATCCTCTG
* ** *
848417 TTGACTTATTGG-TTCGAT-CTTAGTCAA-CTTCTTATCCCTCAT-
1 TT-ACTTATTGGCTTAG-TCCCAAGTAAATCTT-TTAT-CCTC-TG
* * **
848459 TTACTTGTTGGCTTAGTCACGGGTAAATCTTTTATCCTCTG
1 TTACTTATTGGCTTAGTCCCAAGTAAATCTTTTATCCTCTG
848500 TTA
1 TTA
848503 ACTTGTCAGT
Statistics
Matches: 65, Mismatches: 12, Indels: 18
0.68 0.13 0.19
Matches are distributed among these distances:
40 4 0.06
41 31 0.48
42 26 0.40
43 4 0.06
ACGTcount: A:0.20, C:0.22, G:0.14, T:0.44
Consensus pattern (41 bp):
TTACTTATTGGCTTAGTCCCAAGTAAATCTTTTATCCTCTG
Found at i:848566 original size:81 final size:82
Alignment explanation
Indices: 848385--848576 Score: 203
Period size: 83 Copynumber: 2.3 Consensus size: 82
848375 TTTACCTATT
* * **
848385 GGCTTAGTCCCAAGTAAATCTTTTATCCTCTGTTGACTTATTGGTTCGATCTTAGTCAACTTCTT
1 GGCTTAGTTCCAAGTAAATCTTTTATCCTCTGTTAACTTATCAGTTCGATCTTAGTCAACTTCTT
* *
848450 ATCCCTCATTTACTTGTT
66 AT-CCTCATTTACTTCTC
** * * * *
848468 GGCTTAG-TCACGGGTAAATCTTTTATCCTCTGTTAACTTGTCAGTTTGGTCTT-GATCAA-TTT
1 GGCTTAGTTC-CAAGTAAATCTTTTATCCTCTGTTAACTTATCAGTTCGATCTTAG-TCAACTTC
848530 TCTAT-CTCATTTACTTCTC
64 T-TATCCTCATTTACTTCTC
*
848549 GGTTTAGTTCCAAGTAAATCTTTTATCC
1 GGCTTAGTTCCAAGTAAATCTTTTATCC
848577 ATTGTTGATT
Statistics
Matches: 90, Mismatches: 15, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
81 34 0.38
82 7 0.08
83 49 0.54
ACGTcount: A:0.20, C:0.21, G:0.14, T:0.45
Consensus pattern (82 bp):
GGCTTAGTTCCAAGTAAATCTTTTATCCTCTGTTAACTTATCAGTTCGATCTTAGTCAACTTCTT
ATCCTCATTTACTTCTC
Found at i:850171 original size:166 final size:165
Alignment explanation
Indices: 849847--850177 Score: 418
Period size: 166 Copynumber: 2.0 Consensus size: 165
849837 AATTTTCATG
* ** *
849847 GATTTTTAATTTTTAAAATTCATCAAATATCATCTTTTATTTCATATTAAATTGGTTTTTCAAAA
1 GATTTTTAATTTTTAAAATTCATCAAATATAATCTTTTATTTCATATTAAATCAGTTTTTAAAAA
* **
849912 ATTAATTCATTTTTATAAGTTTTGAATTTTTTTATTGAAATTCCCCTATTTTCGAAATGTGGAGT
66 ATTAATTCATTTTTATAAGTTTTGAATTTGTTTATTGAAATT-CCCTATTTTCGAAAAATGGAGT
* *
849977 TTATACTTCGTAAAGTTTTTCAAGGGGATTTTTCTT
130 TTATACTTCATAAAGTTTTGCAAGGGGATTTTTCTT
* * *
850013 GATTTTTAATTTTTAAAATTCATCAAATGTAAT-TATTTGTTTCATATTGAATCAG-TTTTAAAA
1 GATTTTTAATTTTTAAAATTCATCAAATATAATCT-TTTATTTCATATTAAATCAGTTTTTAAAA
* * * *
850076 AATTAATTCATTTTTATGAGTTTTTGAATTTGTTTCTTGAAATT-CCTTTTTCTCGAAAAATTGA
65 AATTAATTCATTTTTATAAG-TTTTGAATTTGTTTATTGAAATTCCCTATTT-TCGAAAAATGGA
* *
850140 GTTTTCTACTTCATAAA-TGTTTGCGAGGGGATTTTTCT
128 G-TTTATACTTCATAAAGT-TTTGCAAGGGGATTTTTCT
850178 CAATTTAAAA
Statistics
Matches: 142, Mismatches: 18, Indels: 10
0.84 0.11 0.06
Matches are distributed among these distances:
164 6 0.04
165 38 0.27
166 98 0.69
ACGTcount: A:0.29, C:0.09, G:0.11, T:0.50
Consensus pattern (165 bp):
GATTTTTAATTTTTAAAATTCATCAAATATAATCTTTTATTTCATATTAAATCAGTTTTTAAAAA
ATTAATTCATTTTTATAAGTTTTGAATTTGTTTATTGAAATTCCCTATTTTCGAAAAATGGAGTT
TATACTTCATAAAGTTTTGCAAGGGGATTTTTCTT
Found at i:850234 original size:166 final size:164
Alignment explanation
Indices: 849854--850237 Score: 373
Period size: 166 Copynumber: 2.3 Consensus size: 164
849844 ATGGATTTTT
* * * * ** *
849854 AATTTTTAAAATTCATCAAATATCATCTTTTA-TTTCATATTAAATTGGTTTTTCAAAAATTAAT
1 AATTTTTAAAATTCATCAAATATAAT-TATTAGCTGCATATTAAATCAG-TTTTAAAAAATTAAT
* **
849918 TCATTTTTATAAGTTTTGAATTTTTTTATTGAAATTCCCCTATTTTCGAAATGTGGAGTTTATAC
64 TCATTTTTATAAGTTTTGAATTTGTTTATTGAAATT-CCCTATTTTCGAAAAATGGAGTTTATAC
* * ** **
849983 TTCGTAAAGTTTTTCAAGGGGATTTTTCTTGATTTTT
128 TTCATAAAGTTTTGCAAGGGGATTTTTCTCAATTTAA
* * * * *
850020 AATTTTTAAAATTCATCAAATGTAATTATTTGTTTCATATTGAATCAGTTTTAAAAAATTAATTC
1 AATTTTTAAAATTCATCAAATATAATTATTAGCTGCATATTAAATCAGTTTTAAAAAATTAATTC
* * * * *
850085 ATTTTTATGAGTTTTTGAATTTGTTTCTTGAAATT-CCTTTTTCTCGAAAAATTGAGTTTTCTAC
66 ATTTTTATAAG-TTTTGAATTTGTTTATTGAAATTCCCTATTT-TCGAAAAATGGAG-TTTATAC
*
850149 TTCATAAA-TGTTTGCGAGGGGATTTTTCTCAATTTAAA
128 TTCATAAAGT-TTTGCAAGGGGATTTTTCTCAATTT-AA
* * **
850187 AATTTTT-AAATTTATCTAATATTGTTATTAAGCTGCA-ATTAAATCAGTTTT
1 AATTTTTAAAATTCATCAAATATAATTATT-AGCTGCATATTAAATCAGTTTT
850238 GCAGAAATCA
Statistics
Matches: 179, Mismatches: 32, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
164 6 0.03
165 40 0.22
166 122 0.68
167 11 0.06
ACGTcount: A:0.31, C:0.09, G:0.10, T:0.49
Consensus pattern (164 bp):
AATTTTTAAAATTCATCAAATATAATTATTAGCTGCATATTAAATCAGTTTTAAAAAATTAATTC
ATTTTTATAAGTTTTGAATTTGTTTATTGAAATTCCCTATTTTCGAAAAATGGAGTTTATACTTC
ATAAAGTTTTGCAAGGGGATTTTTCTCAATTTAA
Found at i:850422 original size:14 final size:15
Alignment explanation
Indices: 850403--850432 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
850393 AGATTTTATC
850403 TTAATTTTTA-AATT
1 TTAATTTTTACAATT
850417 TTAATTTTTACAATT
1 TTAATTTTTACAATT
850432 T
1 T
850433 AATCCTTGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.63
Consensus pattern (15 bp):
TTAATTTTTACAATT
Found at i:850737 original size:12 final size:12
Alignment explanation
Indices: 850720--850760 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
850710 GAGAAACTTG
850720 GAGAAAAAAAGA
1 GAGAAAAAAAGA
850732 GAGAAAAAAAG-
1 GAGAAAAAAAGA
850743 G-GAAAAAAA-A
1 GAGAAAAAAAGA
*
850753 AAGAAAAA
1 GAGAAAAA
850761 TGATGAAGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
10 8 0.31
11 7 0.27
12 11 0.42
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (12 bp):
GAGAAAAAAAGA
Found at i:852627 original size:151 final size:150
Alignment explanation
Indices: 852402--852744 Score: 433
Period size: 151 Copynumber: 2.3 Consensus size: 150
852392 ATCCTTTTGG
* * * * *
852402 GCATTCTTATAATTTTCTTAGAACCGAGTCCTAGGTTATCACCGGGTCTGTTTCTACACCGAAGG
1 GCATTTTTGTAATTTT-TTAGAACTGAGTCCTAGGTTATCACCGGATCTGTTTCTACACCAAAGG
852467 TGTACATTTAGGATAGGTT-ATTCCTTTTATCCTTTTTAAGTTCTTTATGGGTATCGGGTACTTT
65 TGTACATTTAGGATAGGTTCA-TCCTTTTATCCTTTTTAAGTTCTTTA-GGGTATCGGGTACTTT
*
852531 AACGTTGAAGGTATCCCCTAAAA
128 AACGTCGAAGGTATCCCCTAAAA
* **
852554 GCATTTTTGTAATTTTTCAGAACTGAGTCCTAGGTTATCACCGGATCTGCTTT-TATGCCAAAGG
1 GCATTTTTGTAATTTTTTAGAACTGAGTCCTAGGTTATCACCGGATCTG-TTTCTACACCAAAGG
* *
852618 TAG-ATATTTAGGATAGGTTCATCCTTTTATCCTTTTTAAGTTCTTTAGGGTCTCGGGTACTTTA
65 T-GTACATTTAGGATAGGTTCATCCTTTTATCCTTTTTAAGTTCTTTAGGGTATCGGGTACTTTA
* * **
852682 ACGTCGAAGGTATCTCCTTAGG
129 ACGTCGAAGGTATCCCCTAAAA
* * * *
852704 GTATTTTCGTAATTTTTTA-AAATCGAGTCCTAGGTTGTCAC
1 GCATTTTTGTAATTTTTTAGAACT-GAGTCCTAGGTTATCAC
852745 TGAGTCCATT
Statistics
Matches: 167, Mismatches: 20, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
149 3 0.02
150 65 0.39
151 80 0.48
152 19 0.11
ACGTcount: A:0.23, C:0.17, G:0.20, T:0.40
Consensus pattern (150 bp):
GCATTTTTGTAATTTTTTAGAACTGAGTCCTAGGTTATCACCGGATCTGTTTCTACACCAAAGGT
GTACATTTAGGATAGGTTCATCCTTTTATCCTTTTTAAGTTCTTTAGGGTATCGGGTACTTTAAC
GTCGAAGGTATCCCCTAAAA
Found at i:853981 original size:31 final size:30
Alignment explanation
Indices: 853923--853982 Score: 84
Period size: 32 Copynumber: 1.9 Consensus size: 30
853913 TGTCCTAGTT
853923 TTTCTTTTTTTCTCTCCTTTTCTTTTTTAA
1 TTTCTTTTTTTCTCTCCTTTTCTTTTTTAA
**
853953 TTTCTTTTTCTTCTCTTTTTTTTCTTTTTT
1 TTTCTTTTT-TTCTC-TCCTTTTCTTTTTT
853983 TTTTCCAGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 9 0.35
31 5 0.19
32 12 0.46
ACGTcount: A:0.03, C:0.18, G:0.00, T:0.78
Consensus pattern (30 bp):
TTTCTTTTTTTCTCTCCTTTTCTTTTTTAA
Found at i:854729 original size:130 final size:128
Alignment explanation
Indices: 854575--854989 Score: 397
Period size: 130 Copynumber: 3.2 Consensus size: 128
854565 TGAAACCAAA
* **
854575 GTCTAGAAGGTTGACCAGGGCAAAATTGATATAGTCAAATAAAGATAATTAAAATGTAATCCAAG
1 GTCTAAAAGGTTGACCAGGGCAAAATTGATATAGTCAAATAAAGATAACCAAAATGTAATCCAAG
* * * *
854640 GTCTAAAAGGGTTAACCAGGGTAAAACTGATACAATCAAATAAAGGTGATTAGGATATAACCTAG
66 ATCT-AAAGGGTTAACCAGAGCAAAA-TGATACAATCAAATAAAGGTGACTAGGATATAACCTAG
* * ** * ** *
854705 GT-TCAAAGAGTTGACCAGGGCAAAATTGATATAGTGAAGCAAAGATGACCATTATGTAA-CCTA
1 GTCTAAAAG-GTTGACCAGGGCAAAATTGATATAGTCAAATAAAGATAACCAAAATGTAATCCAA
* * * * * *
854768 GATCTAAAGGGTTAACTAGAACAAAATCGATACAGTCAAACAAAGGTGACCAGGATATAATCTTA
65 GATCTAAAGGGTTAACCAGAGCAAAAT-GATACAATCAAATAAAGGTGACTAGGATATAA-CCTA
854833 G
128 G
* * * * ** *
854834 GTCTAAAAGGGTTCACCGGGGCAAAACTGATATAGTC-AATCGAAGGA-AACCAGGATATAATCC
1 GTCTAAAA-GGTTGACCAGGGCAAAATTGATATAGTCAAAT--AAAGATAACCAAAATGTAATCC
* * * * **
854897 CAGCTCTAGAGGGTTAACCAAAGCAAAATTGATACAATCAAATGCAGGTGACTAGGATATAAACC
63 AAGATCTAAAGGGTTAACCAGAGCAAAA-TGATACAATCAAATAAAGGTGACTAGGATAT-AACC
854962 TAG
126 TAG
*
854965 GTCTAAAAGGTTGACCAAGGCAAAA
1 GTCTAAAAGGTTGACCAGGGCAAAA
854990 CCAATACAGT
Statistics
Matches: 227, Mismatches: 48, Indels: 20
0.77 0.16 0.07
Matches are distributed among these distances:
127 1 0.00
128 45 0.20
129 18 0.08
130 94 0.41
131 66 0.29
132 3 0.01
ACGTcount: A:0.42, C:0.15, G:0.21, T:0.22
Consensus pattern (128 bp):
GTCTAAAAGGTTGACCAGGGCAAAATTGATATAGTCAAATAAAGATAACCAAAATGTAATCCAAG
ATCTAAAGGGTTAACCAGAGCAAAATGATACAATCAAATAAAGGTGACTAGGATATAACCTAG
Found at i:854982 original size:65 final size:65
Alignment explanation
Indices: 854575--855066 Score: 222
Period size: 64 Copynumber: 7.6 Consensus size: 65
854565 TGAAACCAAA
* * * * * * * ** ** * * *
854575 GTCTAGAAGGTTGACCAGGGCAAAATTGATATAGTCAAATAAAGATAATTAAAATGTAATCCAAG
1 GTCTAAAAGGTTAACCAAGGCAAAATTGATACAGTCAAATGAAGGTGACCAGGATATAAACCTAG
* * * * * **
854640 GTCTAAAAGGGTTAACCAGGGTAAAACTGATACAATCAAATAAAGGTGATTAGGATAT-AACCTA
1 GTCTAAAA-GGTTAACCAAGGCAAAATTGATACAGTCAAATGAAGGTGACCAGGATATAAACCTA
854704 G
65 G
* * * * * *** * ** *
854705 GT-TCAAAGAGTTGACCAGGGCAAAATTGATATAGTGAAGCAAAGATGACCATTATGT-AACCTA
1 GTCTAAAAG-GTTAACCAAGGCAAAATTGATACAGTCAAATGAAGGTGACCAGGATATAAACCTA
854768 G
65 G
* * * * * ** * *
854769 ATCTAAAGGGTTAA-CTAGAACAAAATCGATACAGTCAAACAAAGGTGACCAGGATATAATCTTA
1 GTCTAAAAGGTTAACCAAG-GCAAAATTGATACAGTCAAATGAAGGTGACCAGGATATAAACCTA
854833 G
65 G
* ** * * ** * *
854834 GTCTAAAAGGGTTCACCGGGGCAAAACTGATATAGTC-AATCGAAGGAAACCAGGATATAATCCC
1 GTCTAAAA-GGTTAACCAAGGCAAAATTGATACAGTCAAAT-GAAGGTGACCAGGATATAAACCT
854898 AG
64 AG
* * * * * * *
854900 CTCTAGAGGGTTAACCAAAGCAAAATTGATACAATCAAATGCAGGTGACTAGGATATAAACCTAG
1 GTCTAAAAGGTTAACCAAGGCAAAATTGATACAGTCAAATGAAGGTGACCAGGATATAAACCTAG
* *** * * * * * *
854965 GTCTAAAAGGTTGACCAAGGCAAAACCAATACAGTCAAACGAAAGTGGCCAAGATGT-AACATAG
1 GTCTAAAAGGTTAACCAAGGCAAAATTGATACAGTCAAATGAAGGTGACCAGGATATAAACCTAG
* ** * * * *
855029 GTTTGGAAGGTTGACTAGGGCAAAGTTGATACAGTCAA
1 GTCTAAAAGGTTAACCAAGGCAAAATTGATACAGTCAA
855067 GCAAAGATGA
Statistics
Matches: 316, Mismatches: 102, Indels: 19
0.72 0.23 0.04
Matches are distributed among these distances:
63 3 0.01
64 114 0.36
65 112 0.35
66 85 0.27
67 2 0.01
ACGTcount: A:0.41, C:0.15, G:0.22, T:0.22
Consensus pattern (65 bp):
GTCTAAAAGGTTAACCAAGGCAAAATTGATACAGTCAAATGAAGGTGACCAGGATATAAACCTAG
Found at i:856706 original size:79 final size:78
Alignment explanation
Indices: 856622--856785 Score: 186
Period size: 78 Copynumber: 2.1 Consensus size: 78
856612 AGGATTGAAG
* * *
856622 TATCCCCTC-AAAATTGATGAGGTTGGAGTATCCCCAAGATAAAAAAATTAATATTTTGGAAAGA
1 TATCCCCTCGAAAA-TAACGAGGTTGGAGTATCCCCAAGAT-AAAAAATCAATATTTTGGAAAGA
856686 AAAATGGGGTTGGAA
64 AAAATGGGGTTGGAA
* * ** * * * *
856701 TATCCCTTCGAAAATAACGGGGTTGGAGTATCCTGATGGTGAAAAATCAATATTTTGGAAATAAA
1 TATCCCCTCGAAAATAACGAGGTTGGAGTATCCCCAAGATAAAAAATCAATATTTTGGAAAGAAA
* *
856766 AGTGGGGTTGGAG
66 AATGGGGTTGGAA
856779 TATCCCC
1 TATCCCC
856786 GATGCTAGAA
Statistics
Matches: 70, Mismatches: 14, Indels: 3
0.80 0.16 0.03
Matches are distributed among these distances:
78 39 0.56
79 27 0.39
80 4 0.06
ACGTcount: A:0.36, C:0.13, G:0.24, T:0.27
Consensus pattern (78 bp):
TATCCCCTCGAAAATAACGAGGTTGGAGTATCCCCAAGATAAAAAATCAATATTTTGGAAAGAAA
AATGGGGTTGGAA
Found at i:856774 original size:50 final size:50
Alignment explanation
Indices: 856719--856835 Score: 137
Period size: 51 Copynumber: 2.3 Consensus size: 50
856709 CGAAAATAAC
* * * *
856719 GGGGTTGGAGTATCCTGATGGT-GAAAAATCAATATTTTGGAAATAAAAGT
1 GGGGTTGGAGTATCCCGATGCTAG-AAAATCAATATTTTAGAAATAAAACT
** *
856769 GGGGTTGGAGTATCCCCGATGCTAGAAAATTGATTTTTTAGAAATAAAACT
1 GGGGTTGGAGTAT-CCCGATGCTAGAAAATCAATATTTTAGAAATAAAACT
*
856820 AGGGTTGGAGTATCCC
1 GGGGTTGGAGTATCCC
856836 CTTAGAAATA
Statistics
Matches: 57, Mismatches: 8, Indels: 4
0.83 0.12 0.06
Matches are distributed among these distances:
50 16 0.28
51 40 0.70
52 1 0.02
ACGTcount: A:0.32, C:0.10, G:0.27, T:0.30
Consensus pattern (50 bp):
GGGGTTGGAGTATCCCGATGCTAGAAAATCAATATTTTAGAAATAAAACT
Found at i:856827 original size:129 final size:130
Alignment explanation
Indices: 856642--856915 Score: 365
Period size: 129 Copynumber: 2.1 Consensus size: 130
856632 AAATTGATGA
* *
856642 GGTTGGAGTATCCCCAAGATAAAAAAATTAATATTTTGGAAAGAAAAATGGGGTTGGAATAT-CC
1 GGTTGGAGTATCCCCAAGATAAAAAAATTAATATTTTAGAAAGAAAAATAGGGTTGGAATATCCC
* * * *
856706 CTTCGAAAATAACGGGGTTGGAGTAT-CCTGATGGTGAAAAATCAATATTTTGGAAATAAAAGTG
66 CTTAG-AAATAACGGGGTTGAAGTATCCCCGATAGTGAAAAATCAATATTTTGGAAATAAAAGTG
856770 G
130 G
* * * * * * * *
856771 GGTTGGAGTATCCCCGATGCT-AGAAAATTGATTTTTTAGAAATAAAACTAGGGTTGGAGTATCC
1 GGTTGGAGTATCCCC-AAGATAAAAAAATTAATATTTTAGAAAGAAAAATAGGGTTGGAATATCC
**
856835 CCTTAGAAATAACGGGGTTGAAGTATCCCCGATAGTGAAAAATTGATATTTTGGAAATAAAAGTG
65 CCTTAGAAATAACGGGGTTGAAGTATCCCCGATAGTGAAAAATCAATATTTTGGAAATAAAAGTG
856900 G
130 G
856901 GGTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
856916 TCGGAAATAA
Statistics
Matches: 126, Mismatches: 16, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
129 67 0.53
130 59 0.47
ACGTcount: A:0.35, C:0.11, G:0.25, T:0.28
Consensus pattern (130 bp):
GGTTGGAGTATCCCCAAGATAAAAAAATTAATATTTTAGAAAGAAAAATAGGGTTGGAATATCCC
CTTAGAAATAACGGGGTTGAAGTATCCCCGATAGTGAAAAATCAATATTTTGGAAATAAAAGTGG
Found at i:856860 original size:79 final size:79
Alignment explanation
Indices: 856769--856942 Score: 228
Period size: 79 Copynumber: 2.2 Consensus size: 79
856759 AAATAAAAGT
* *
856769 GGGGTTGGAGTATCCCCGAT-GCT-AGAAAATTGATTTTTTAGAAATAAAACTAGGGTTGGAGTA
1 GGGGTTGAAGTATCCCCGATAG-TGA-AAAATTGATATTTTAGAAATAAAACTAGGGTTGGAGTA
*
856832 TCCCCTTAGAAATAAC
64 TCCCCTCAGAAATAAC
* * *
856848 GGGGTTGAAGTATCCCCGATAGTGAAAAATTGATATTTTGGAAATAAAAGTGGGGTTGGAGTATC
1 GGGGTTGAAGTATCCCCGATAGTGAAAAATTGATATTTTAGAAATAAAACTAGGGTTGGAGTATC
*
856913 CCCTCGGAAATAAC
66 CCCTCAGAAATAAC
*
856927 AGGGTT-AGAGTATCCC
1 GGGGTTGA-AGTATCCC
856943 TAAGATGAAA
Statistics
Matches: 84, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
78 1 0.01
79 81 0.96
80 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (79 bp):
GGGGTTGAAGTATCCCCGATAGTGAAAAATTGATATTTTAGAAATAAAACTAGGGTTGGAGTATC
CCCTCAGAAATAAC
Found at i:856966 original size:79 final size:80
Alignment explanation
Indices: 856770--856969 Score: 216
Period size: 79 Copynumber: 2.5 Consensus size: 80
856760 AATAAAAGTG
* * *
856770 GGGTTGGAGTATCCCCGAT-GCT-AGAAAATTGAT-TTTTTAGAAATAAAACTAGGGTTGGAGTA
1 GGGTTGAAGTATCCCCGATAG-TGA-AAAATCGATATTTTTGGAAATAAAACTAGGGTTGGAGTA
* *
856832 TCCCCTTAGAAATAACG
64 TCCCCTCAGAAATAACA
* * *
856849 GGGTTGAAGTATCCCCGATAGTGAAAAATTGATA-TTTTGGAAATAAAAGTGGGGTTGGAGTATC
1 GGGTTGAAGTATCCCCGATAGTGAAAAATCGATATTTTTGGAAATAAAACTAGGGTTGGAGTATC
*
856913 CCCTCGGAAATAACA
66 CCCTCAGAAATAACA
* *
856928 GGGTT-AGAGTAT-CCCTA-AGATGAAATATCGATATTTTTGGAA
1 GGGTTGA-AGTATCCCCGATAG-TGAAAAATCGATATTTTTGGAA
856970 GGAAAATTTA
Statistics
Matches: 105, Mismatches: 10, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
77 2 0.02
78 16 0.15
79 85 0.81
80 2 0.02
ACGTcount: A:0.34, C:0.12, G:0.25, T:0.29
Consensus pattern (80 bp):
GGGTTGAAGTATCCCCGATAGTGAAAAATCGATATTTTTGGAAATAAAACTAGGGTTGGAGTATC
CCCTCAGAAATAACA
Found at i:859349 original size:20 final size:21
Alignment explanation
Indices: 859324--859378 Score: 76
Period size: 20 Copynumber: 2.7 Consensus size: 21
859314 AAAAACCCAG
**
859324 AATGTATCGATACAATGA-AA
1 AATGTATCGATACAAACAGAA
*
859344 AATGTATCGATACAAACAGTA
1 AATGTATCGATACAAACAGAA
859365 AATGTATCGATACA
1 AATGTATCGATACA
859379 TTTACTTATG
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
20 16 0.52
21 15 0.48
ACGTcount: A:0.47, C:0.13, G:0.15, T:0.25
Consensus pattern (21 bp):
AATGTATCGATACAAACAGAA
Found at i:859881 original size:20 final size:20
Alignment explanation
Indices: 859798--859868 Score: 108
Period size: 20 Copynumber: 3.5 Consensus size: 20
859788 GGTGCCTACA
*
859798 GTATCGATACACATA-AAAAT
1 GTATCGATACA-ATACATAAT
*
859818 GTATCAATACAATACATAAT
1 GTATCGATACAATACATAAT
859838 GTATCGATACAATACATAAT
1 GTATCGATACAATACATAAT
859858 GTATCGATACA
1 GTATCGATACA
859869 TCCCTAAATG
Statistics
Matches: 47, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
19 3 0.06
20 44 0.94
ACGTcount: A:0.46, C:0.15, G:0.10, T:0.28
Consensus pattern (20 bp):
GTATCGATACAATACATAAT
Found at i:868638 original size:20 final size:20
Alignment explanation
Indices: 868613--868659 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
868603 CCTTATTTGC
868613 ATCGATAC-ATGTCAAAATAT
1 ATCGATACAATG-CAAAATAT
* *
868633 ATCGATACAATGCACAATGT
1 ATCGATACAATGCAAAATAT
868653 ATCGATA
1 ATCGATA
868660 TATTATGTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 21 0.88
21 3 0.12
ACGTcount: A:0.43, C:0.17, G:0.13, T:0.28
Consensus pattern (20 bp):
ATCGATACAATGCAAAATAT
Found at i:870504 original size:76 final size:76
Alignment explanation
Indices: 870424--870584 Score: 209
Period size: 76 Copynumber: 2.1 Consensus size: 76
870414 AAATGATCTG
* *
870424 ATAACAAGCTAAAGAAGAAAAGCACAAT-GAG-AAATATGTGATTTTTAAAATTACCATTAATAG
1 ATAACAAACTAAAGAAGAAAAACACAATAGAGTAAATATG-G-TTTTTAAAATTACCATTAATAG
870487 CCAAAACAAACTA
64 CCAAAACAAACTA
* ** * * * *
870500 ATAACAAACTGAAGAAGAAAAACATGATAGGGTATATATGGTTTTTATAATTTCCATTAATAGCC
1 ATAACAAACTAAAGAAGAAAAACACAATAGAGTAAATATGGTTTTTAAAATTACCATTAATAGCC
870565 AAAACAAACTA
66 AAAACAAACTA
870576 ATAACAAAC
1 ATAACAAAC
870585 GAATTCACCT
Statistics
Matches: 74, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
76 65 0.88
77 3 0.04
78 6 0.08
ACGTcount: A:0.51, C:0.13, G:0.12, T:0.24
Consensus pattern (76 bp):
ATAACAAACTAAAGAAGAAAAACACAATAGAGTAAATATGGTTTTTAAAATTACCATTAATAGCC
AAAACAAACTA
Found at i:875947 original size:28 final size:28
Alignment explanation
Indices: 875835--876054 Score: 264
Period size: 28 Copynumber: 7.8 Consensus size: 28
875825 GATCCTAAAA
*
875835 GAAAGGATGCCACTGACTTGTGGGCTTT
1 GAAATGATGCCACTGACTTGTGGGCTTT
* * ***
875863 GAAAGGGTATGCCACTGACTTATGAATTTT
1 GAAA-TG-ATGCCACTGACTTGTGGGCTTT
* *
875893 GAAATGGTGTCA-TGACTTGTGGGCTTT
1 GAAATGATGCCACTGACTTGTGGGCTTT
* ***
875920 GAAATGATGCCATTGACTTGTCATCTTT
1 GAAATGATGCCACTGACTTGTGGGCTTT
* *
875948 GAAAGGATGCCATTGACTTGTGGGCTTT
1 GAAATGATGCCACTGACTTGTGGGCTTT
875976 GAAAGTG-TGCCACTGACTTGTGGGCTTT
1 GAAA-TGATGCCACTGACTTGTGGGCTTT
876004 GAAATGATGCCACTGACTTGTGGGCTTT
1 GAAATGATGCCACTGACTTGTGGGCTTT
*
876032 GAAATGATGTCACTGACTTGTGG
1 GAAATGATGCCACTGACTTGTGG
876055 ACTTAAAAGA
Statistics
Matches: 164, Mismatches: 23, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
27 23 0.14
28 115 0.70
29 4 0.02
30 22 0.13
ACGTcount: A:0.23, C:0.15, G:0.29, T:0.33
Consensus pattern (28 bp):
GAAATGATGCCACTGACTTGTGGGCTTT
Found at i:876199 original size:55 final size:54
Alignment explanation
Indices: 876082--876337 Score: 246
Period size: 55 Copynumber: 4.7 Consensus size: 54
876072 AGAGTCGTAG
* * * * * * *
876082 ACTTAAAAGGCTGCCACGGAGTCGTGGAC-TTAAAAGGGTGCCATGGAGTTGTGG
1 ACTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAA-GGTACCACGAAGTTATGA
* * *
876136 ACATAAAAGGGTACCACGAAGTTGTGGACTTTAAAAGGTACCACGAAGTTATGA
1 ACTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGTACCACGAAGTTATGA
* * * * *
876190 ACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAGGGTGCCACGGAGTTGTGG
1 AC-TTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGTACCACGAAGTTATGA
* * * * *
876245 ACTTAAAAAGATGCCACGGAGTTGTGGACTTTAAAAGGGTGCCAC-AGAGTTGTGG
1 ACTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAA-GGTACCACGA-AGTTATGA
** *
876300 ACTTAAAAGAATGCCACAGAGTTGTGGACTTTGAAAAG
1 ACTTAAAAGGGTGCCACGGAGTTGTGGACTTT-AAAAG
876338 AAATGCCACT
Statistics
Matches: 172, Mismatches: 25, Indels: 9
0.83 0.12 0.04
Matches are distributed among these distances:
54 70 0.41
55 98 0.57
56 4 0.02
ACGTcount: A:0.31, C:0.15, G:0.30, T:0.23
Consensus pattern (54 bp):
ACTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGTACCACGAAGTTATGA
Found at i:876212 original size:82 final size:82
Alignment explanation
Indices: 876111--876338 Score: 305
Period size: 82 Copynumber: 2.8 Consensus size: 82
876101 AGTCGTGGAC
* * * *
876111 TTAAAAGGGTGCCATGGAGTTGTGGACATAAAAGGGTACCACGAAGTTGTGGACTTTAAAAGGTA
1 TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGAAGTTGTGGACTTTAAAAGATA
876176 CCACGAAGTTATGAACT
66 CCACGAAGTTATGAACT
* * * *
876193 TTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAGGGTGCCACGGAGTTGTGGACTTAAAAAGATG
1 TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGAAGTTGTGGACTTTAAAAGATA
* * *
876258 CCACGGAGTTGTGGACT
66 CCACGAAGTTATGAACT
* **
876275 TTAAAAGGGTGCCACAGAGTTGTGGACTTAAAAGAATGCCAC-AGAGTTGTGGACTTTGAAAAGA
1 TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGA-AGTTGTGGACTTT-AAAAGA
876339 AATGCCACTG
Statistics
Matches: 127, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
82 121 0.95
83 6 0.05
ACGTcount: A:0.32, C:0.14, G:0.30, T:0.24
Consensus pattern (82 bp):
TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGAAGTTGTGGACTTTAAAAGATA
CCACGAAGTTATGAACT
Found at i:876314 original size:27 final size:27
Alignment explanation
Indices: 876049--876330 Score: 332
Period size: 27 Copynumber: 10.4 Consensus size: 27
876039 TGTCACTGAC
* **
876049 TTGTGGACTTAAAAGAGTGCCATAGAG
1 TTGTGGACTTAAAAGGGTGCCACGGAG
* * *
876076 TCGTAGACTTAAAAGGCTGCCACGGAG
1 TTGTGGACTTAAAAGGGTGCCACGGAG
* *
876103 TCGTGGACTTAAAAGGGTGCCATGGAG
1 TTGTGGACTTAAAAGGGTGCCACGGAG
* * *
876130 TTGTGGACATAAAAGGGTACCACGAAG
1 TTGTGGACTTAAAAGGGTGCCACGGAG
* *
876157 TTGTGGACTTTAAAA-GGTACCACGAAG
1 TTGTGGAC-TTAAAAGGGTGCCACGGAG
* *
876184 TTATGAACTTTAAAAGGGTGCCACGGAG
1 TTGTGGAC-TTAAAAGGGTGCCACGGAG
*
876212 TTGTGGACTTTAAAGGGTGCCACGGAG
1 TTGTGGACTTAAAAGGGTGCCACGGAG
* *
876239 TTGTGGACTTAAAAAGATGCCACGGAG
1 TTGTGGACTTAAAAGGGTGCCACGGAG
*
876266 TTGTGGACTTTAAAAGGGTGCCACAGAG
1 TTGTGGAC-TTAAAAGGGTGCCACGGAG
** *
876294 TTGTGGACTTAAAAGAATGCCACAGAG
1 TTGTGGACTTAAAAGGGTGCCACGGAG
876321 TTGTGGACTT
1 TTGTGGACTT
876331 TGAAAAGAAA
Statistics
Matches: 222, Mismatches: 30, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
27 177 0.80
28 45 0.20
ACGTcount: A:0.30, C:0.15, G:0.30, T:0.24
Consensus pattern (27 bp):
TTGTGGACTTAAAAGGGTGCCACGGAG
Found at i:876331 original size:109 final size:109
Alignment explanation
Indices: 876049--876331 Score: 356
Period size: 109 Copynumber: 2.6 Consensus size: 109
876039 TGTCACTGAC
* * * * * *
876049 TTGTGGAC-TTAAAAGAGTGCCATAGAGTCGTAGACTTAAAAGGCTGCCACGGAGTCGTGGACTT
1 TTGTGGACTTTAAAAGGGTGCCACAGAGTTGTGGACTTAAAAGGATGCCACGGAGTTGTGGACTT
* * * *
876113 AAAAGGGTGCCATGGAGTTGTGGACATAAAAGGGTACCACGAAG
66 TAAAGGGTGCCACGGAGTTGTGGACATAAAAAGATACCACGAAG
* * * *
876157 TTGTGGACTTTAAAA-GGTACCAC-GAAGTTATGAACTTTAAAAGGGTGCCACGGAGTTGTGGAC
1 TTGTGGACTTTAAAAGGGTGCCACAG-AGTTGTGGAC-TTAAAAGGATGCCACGGAGTTGTGGAC
* * *
876220 TTTAAAGGGTGCCACGGAGTTGTGGACTTAAAAAGATGCCACGGAG
64 TTTAAAGGGTGCCACGGAGTTGTGGACATAAAAAGATACCACGAAG
* *
876266 TTGTGGACTTTAAAAGGGTGCCACAGAGTTGTGGACTTAAAAGAATGCCACAGAGTTGTGGACTT
1 TTGTGGACTTTAAAAGGGTGCCACAGAGTTGTGGACTTAAAAGGATGCCACGGAGTTGTGGACTT
876331 T
66 T
876332 GAAAAGAAAT
Statistics
Matches: 148, Mismatches: 22, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
107 1 0.01
108 19 0.13
109 112 0.76
110 15 0.10
111 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.30, T:0.24
Consensus pattern (109 bp):
TTGTGGACTTTAAAAGGGTGCCACAGAGTTGTGGACTTAAAAGGATGCCACGGAGTTGTGGACTT
TAAAGGGTGCCACGGAGTTGTGGACATAAAAAGATACCACGAAG
Found at i:882991 original size:19 final size:20
Alignment explanation
Indices: 882967--883006 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
882957 TTGAAAAATC
882967 ACCTCGAA-TCATTTGGTAT
1 ACCTCGAATTCATTTGGTAT
882986 ACCTCGAATTCATTTGGTAT
1 ACCTCGAATTCATTTGGTAT
883006 A
1 A
883007 GAAAAATTAC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 8 0.40
20 12 0.60
ACGTcount: A:0.28, C:0.20, G:0.15, T:0.38
Consensus pattern (20 bp):
ACCTCGAATTCATTTGGTAT
Found at i:886544 original size:20 final size:21
Alignment explanation
Indices: 886519--886558 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
886509 AATCTTTCAA
886519 AATGTATCAATACAT-TGAAT
1 AATGTATCAATACATCTGAAT
*
886539 AATGTATCGATACATCTGAA
1 AATGTATCAATACATCTGAA
886559 AAACCCAGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.42, C:0.12, G:0.12, T:0.33
Consensus pattern (21 bp):
AATGTATCAATACATCTGAAT
Found at i:889187 original size:19 final size:19
Alignment explanation
Indices: 889165--889217 Score: 72
Period size: 19 Copynumber: 2.7 Consensus size: 19
889155 TTTCAAATGC
889165 ATATATAGATACATTATGA
1 ATATATAGATACATTATGA
889184 ATATATCA-ATACATTATGA
1 ATATAT-AGATACATTATGA
*
889203 ATTATATCGATACAT
1 A-TATATAGATACAT
889218 AAGAGCGTGT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
19 18 0.60
20 12 0.40
ACGTcount: A:0.45, C:0.09, G:0.08, T:0.38
Consensus pattern (19 bp):
ATATATAGATACATTATGA
Found at i:894537 original size:21 final size:21
Alignment explanation
Indices: 894499--894539 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
894489 CCTGATTTTG
*
894499 CTTCTTTTTTTTTGTTTTGCA
1 CTTCTTTTTTATTGTTTTGCA
894520 CTTCTTTTTTCATT-TTTTGC
1 CTTCTTTTTT-ATTGTTTTGC
894540 TTTTACTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.05, C:0.17, G:0.07, T:0.71
Consensus pattern (21 bp):
CTTCTTTTTTATTGTTTTGCA
Found at i:895030 original size:112 final size:111
Alignment explanation
Indices: 894817--895035 Score: 341
Period size: 112 Copynumber: 2.0 Consensus size: 111
894807 TAAAATTAAC
* * * * *
894817 TATTTCTAATCTTAAGACAATTATGTGAATTGAAGAATCATTCCTCAGGAAGAACTATTTTAAAA
1 TATTTCTAATCTAAAAACAATTATGTGAACTAAAGAATCATTCCCCAGGAAGAACTATTTTAAAA
*
894882 ATATTTTGAACATCTTAATCAAATGATATTGCATTCAATTTTTCTT
66 ATATTTTGAACATCTTAATCAAATGATATCGCATTCAATTTTTCTT
894928 TATTTCTAATCTCAAAAACAATTATGTGAACTAAAGAATCATTCCCCCA-GAAGAACTATTTTAA
1 TATTTCTAATCT-AAAAACAATTATGTGAACTAAAGAATCATT-CCCCAGGAAGAACTATTTTAA
* *
894992 AAATATTTTGAACATTTTAATCCAATGATATCGCATTCAATTTT
64 AAATATTTTGAACATCTTAATCAAATGATATCGCATTCAATTTT
895036 GTGTTTCCTT
Statistics
Matches: 98, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
111 12 0.12
112 82 0.84
113 4 0.04
ACGTcount: A:0.38, C:0.15, G:0.09, T:0.38
Consensus pattern (111 bp):
TATTTCTAATCTAAAAACAATTATGTGAACTAAAGAATCATTCCCCAGGAAGAACTATTTTAAAA
ATATTTTGAACATCTTAATCAAATGATATCGCATTCAATTTTTCTT
Found at i:898705 original size:13 final size:13
Alignment explanation
Indices: 898687--898711 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
898677 AAATTGCACA
898687 GTATCGATACATT
1 GTATCGATACATT
898700 GTATCGATACAT
1 GTATCGATACAT
898712 GACCAAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:898724 original size:20 final size:21
Alignment explanation
Indices: 898699--898751 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 21
898689 ATCGATACAT
**
898699 TGTATCGATACATGACCA-AA
1 TGTATCGATACATGAAAAGAA
*
898719 TGTATCGATACTTGAAAAGAA
1 TGTATCGATACATGAAAAGAA
898740 TGTATCGATACA
1 TGTATCGATACA
898752 AGTCATTGGC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 15 0.54
21 13 0.46
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (21 bp):
TGTATCGATACATGAAAAGAA
Found at i:898828 original size:20 final size:19
Alignment explanation
Indices: 898785--898835 Score: 57
Period size: 20 Copynumber: 2.6 Consensus size: 19
898775 TAGCCAAATT
* *
898785 TGTATCGATACACATAATA
1 TGTATCGATACACACAAAA
*
898804 TGTATCGATACATCCCAAAA
1 TGTATCGATACA-CACAAAA
*
898824 TGTATCAATACA
1 TGTATCGATACA
898836 ATGGCTTGTA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
19 12 0.44
20 15 0.56
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.29
Consensus pattern (19 bp):
TGTATCGATACACACAAAA
Found at i:907472 original size:13 final size:13
Alignment explanation
Indices: 907454--907478 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
907444 AAATTGCACA
907454 GTATCGATACATT
1 GTATCGATACATT
907467 GTATCGATACAT
1 GTATCGATACAT
907479 GACCAAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:907491 original size:20 final size:21
Alignment explanation
Indices: 907466--907516 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 21
907456 ATCGATACAT
**
907466 TGTATCGATACATGACCA-AA
1 TGTATCGATACATGAAAAGAA
*
907486 TGTATCGATACTTGAAAAGAA
1 TGTATCGATACATGAAAAGAA
907507 TGTATCGATA
1 TGTATCGATA
907517 AAGGTCATTG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
20 15 0.56
21 12 0.44
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.29
Consensus pattern (21 bp):
TGTATCGATACATGAAAAGAA
Found at i:907595 original size:20 final size:20
Alignment explanation
Indices: 907552--907603 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
907542 TAGCCAAATT
* *
907552 TGTATCGATACA-CATAATA
1 TGTATCGATACATCACAAAA
*
907571 TGTATCGATACATCCCAAAA
1 TGTATCGATACATCACAAAA
907591 TGTATCGATACAT
1 TGTATCGATACAT
907604 TGGCTTGTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 12 0.41
20 17 0.59
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.31
Consensus pattern (20 bp):
TGTATCGATACATCACAAAA
Found at i:915419 original size:80 final size:76
Alignment explanation
Indices: 915335--915636 Score: 218
Period size: 79 Copynumber: 3.8 Consensus size: 76
915325 GATGGTAAGG
*
915335 TTGGAGTATCCCGAGAGATGTAAAATTCGATGTTCTAGAAGAAAAAACGAGG-TTAGAGTATCCC
1 TTGGAGTATCCCTAGAGATG-AAAATTCGATGTT-TAGAA-AAAAAACGAGGATTAGAGTAT-CC
* *
915399 CTTGAAAATGATAGGA
62 CTTAAAAATGGT-GGA
* * * * * *
915415 TTGGAGTATCCCTA-AGATGAAACTTTTGGTGTTTTAGAAGTAAAAACG-GGGTTGGAGTATCCC
1 TTGGAGTATCCCTAGAGATGAAA-ATTCGATG-TTTAGAA-AAAAAACGAGGATTAGAGTATCCC
* * *
915478 TTTAGAGATGGTGGGG
63 -TTAAAAATGGT-GGA
* * * * *
915494 TTAGAGTATCCCTAGAAATGAAAAATTCAATGTTTAGGAAATAAAAATG-GGATTAGAGTATCGC
1 TTGGAGTATCCCTAGAGATG-AAAATTCGATGTTTA-GAAA-AAAAACGAGGATTAGAGTATCCC
915558 TTCAAAAATGGTGAGA
63 TT-AAAAATGGTG-GA
* * * * *
915574 TTGGAGTATCCCCAGCA-ATGAAAATTTGATGTTTGGAAAATAAAACTAGGCTTAGAGTATCCC
1 TTGGAGTATCCCTAG-AGATGAAAATTCGATGTTTAGAAAA-AAAACGAGGATTAGAGTATCCC
915637 CTCGTGGGAT
Statistics
Matches: 174, Mismatches: 35, Indels: 27
0.74 0.15 0.11
Matches are distributed among these distances:
77 1 0.01
78 16 0.09
79 85 0.49
80 68 0.39
81 4 0.02
ACGTcount: A:0.35, C:0.12, G:0.25, T:0.28
Consensus pattern (76 bp):
TTGGAGTATCCCTAGAGATGAAAATTCGATGTTTAGAAAAAAAACGAGGATTAGAGTATCCCTTA
AAAATGGTGGA
Found at i:915530 original size:79 final size:79
Alignment explanation
Indices: 915311--915607 Score: 233
Period size: 80 Copynumber: 3.7 Consensus size: 79
915301 TCAAGGTTGA
* * * * *
915311 AGTAT-CCTCTCAGAGATGGTAAGGTTGGAGTATCCCGAGAGATGTAAAATTCGATGTTCTAGAA
1 AGTATCCCT-TCAGAAATGGTAAGATTGGAGTATCCCTAGAAATGAAAAATTCGATGTT-TAGAA
* *
915375 GAAAAAACGAGGTTAG
64 GTAAAAACGGGGTTAG
* * * * ** * *
915391 AGTATCCCCTTGA-AAATGATAGGATTGGAGTATCCCTA-AGATGAAACTTTTGGTGTTTTAGAA
1 AGTAT-CCCTTCAGAAATGGTAAGATTGGAGTATCCCTAGAAATGAAAAATTCGATG-TTTAGAA
*
915454 GTAAAAACGGGGTTGG
64 GTAAAAACGGGGTTAG
* * ** * * * *
915470 AGTATCCCTTTAGAGATGGTGGGGTTAGAGTATCCCTAGAAATGAAAAATTCAATGTTTAGGAAA
1 AGTATCCCTTCAGAAATGGTAAGATTGGAGTATCCCTAGAAATGAAAAATTCGATGTTTA-GAAG
* *
915535 TAAAAATGGGATTAG
65 TAAAAACGGGGTTAG
* * * * * *
915550 AGTATCGCTTCAAAAATGGTGAGATTGGAGTATCCCCAGCAATG-AAAATTTGATGTTT
1 AGTATCCCTTCAGAAATGGTAAGATTGGAGTATCCCTAGAAATGAAAAATTCGATGTTT
915608 GGAAAATAAA
Statistics
Matches: 170, Mismatches: 41, Indels: 13
0.76 0.18 0.06
Matches are distributed among these distances:
78 6 0.04
79 71 0.42
80 88 0.52
81 2 0.01
82 3 0.02
ACGTcount: A:0.34, C:0.11, G:0.26, T:0.29
Consensus pattern (79 bp):
AGTATCCCTTCAGAAATGGTAAGATTGGAGTATCCCTAGAAATGAAAAATTCGATGTTTAGAAGT
AAAAACGGGGTTAG
Found at i:915607 original size:159 final size:159
Alignment explanation
Indices: 915305--915791 Score: 343
Period size: 159 Copynumber: 3.1 Consensus size: 159
915295 TGAAAATCAA
* * * *
915305 GGTTGAAGTATCCTCTCAGAGATGGTAAGGTTGGAGTATCCCGAGAGATGTAAAATTCGATGTTC
1 GGTTGAAGTATCCTCTCAGAGATGGTAAGGTTAGAGTATCCCGAGAAATGAAAAATTCAATGTTC
* *
915370 TAGAAGAAAAAACGAGGTTAGAGTATCCCCTTGAAAATGATAGGATTGGAGTATCCCTAAGATGA
66 TAGAAGAAAAAACGAGGTTAGAGTATCCCCTTAAAAATGATAGGATTGGAGTATCCCCAAGATGA
* *
915435 AACTTTTGGTGTTTTAGAAGTAAAAACGG
131 AACATTTGATGTTTTAGAAGTAAAAACGG
* * ** *
915464 GGTTGGAGTATCC-CTTTAGAGATGGTGGGGTTAGAGTATCCCTAGAAATGAAAAATTCAATGTT
1 GGTTGAAGTATCCTC-TCAGAGATGGTAAGGTTAGAGTATCCCGAGAAATGAAAAATTCAATGTT
* * *
915528 -TAGGAA-ATAAAAATG-GGATTAGAGTAT-CGCTTCAAAAATGGT-GAGATTGGAGTATCCCC-
65 CTA-GAAGA-AAAAACGAGG-TTAGAGTATCCCCTT-AAAAATGATAG-GATTGGAGTATCCCCA
* * *
915587 AGCAATGAAA-ATTTGATG-TTTGGAA-AATAAAACTAG
125 AG--ATGAAACATTTGATGTTTTAGAAGTA-AAAAC-GG
* * * * * * *
915623 GCTT-AGAGTATCCCCTC---G-TGG---GATTAAAGTATCCCCA-AAGATGAAGAAATTTAATA
1 GGTTGA-AGTATCCTCTCAGAGATGGTAAGGTTAGAGTATCCCGAGAA-ATGAA-AAATTCAATG
* * * * * * * * *
915679 TTTTAGAAGTAAAAAC-AGGGTTGGAGTATCTCCTCAGAAATGATGGGGTTGGACTATCCCCAAG
63 TTCTAGAAGAAAAAACGA-GGTTAGAGTATCCCCTTAAAAATGATAGGATTGGAGTATCCCCAAG
* **
915743 ATGAAA-ATTTAATGTTTTAGAAGTAAAAGTGG
127 ATGAAACATTTGATGTTTTAGAAGTAAAAACGG
915775 GGTT-AGAGTATCCTCTC
1 GGTTGA-AGTATCCTCTC
915792 GAAAATGATG
Statistics
Matches: 260, Mismatches: 45, Indels: 53
0.73 0.13 0.15
Matches are distributed among these distances:
151 2 0.01
152 47 0.18
153 55 0.21
154 10 0.04
155 3 0.01
156 1 0.00
157 1 0.00
158 24 0.09
159 110 0.42
160 7 0.03
ACGTcount: A:0.35, C:0.12, G:0.25, T:0.28
Consensus pattern (159 bp):
GGTTGAAGTATCCTCTCAGAGATGGTAAGGTTAGAGTATCCCGAGAAATGAAAAATTCAATGTTC
TAGAAGAAAAAACGAGGTTAGAGTATCCCCTTAAAAATGATAGGATTGGAGTATCCCCAAGATGA
AACATTTGATGTTTTAGAAGTAAAAACGG
Found at i:915761 original size:78 final size:79
Alignment explanation
Indices: 915652--915859 Score: 235
Period size: 78 Copynumber: 2.6 Consensus size: 79
915642 GGGATTAAAG
*
915652 TATCCCCAAAGATGAAGAAATTTAATATTTTAGAAGTAAAAACAGGGTTGGAGTAT-CTCCTC-A
1 TATCCCC-AAGATGAA-AAATTTAATGTTTTAGAAGTAAAAACAGGGTTGGAGTATCCT-CTCGA
* *
915715 GAAATGATGGGGTTGGAC
63 -AAATGATGGGGTTGAAA
*** *
915733 TATCCCCAAGATG-AAAATTTAATGTTTTAGAAGTAAAAGTGGGGTTAGAGTATCCTCTCGAAAA
1 TATCCCCAAGATGAAAAATTTAATGTTTTAGAAGTAAAAACAGGGTTGGAGTATCCTCTCGAAAA
*
915797 TGATGGGGTTTAAA
66 TGATGGGGTTGAAA
* * * *
915811 TAT-ACCAAGATGAAAAATTCAATGTTTTGGAAGTGAAAACAAGGGTTGG
1 TATCCCCAAGATGAAAAATTTAATGTTTTAGAAGTAAAAAC-AGGGTTGG
915860 TGTACCCCTT
Statistics
Matches: 107, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
77 8 0.07
78 76 0.71
79 10 0.09
80 6 0.06
81 7 0.07
ACGTcount: A:0.38, C:0.11, G:0.24, T:0.28
Consensus pattern (79 bp):
TATCCCCAAGATGAAAAATTTAATGTTTTAGAAGTAAAAACAGGGTTGGAGTATCCTCTCGAAAA
TGATGGGGTTGAAA
Found at i:918293 original size:52 final size:52
Alignment explanation
Indices: 918215--918344 Score: 179
Period size: 52 Copynumber: 2.5 Consensus size: 52
918205 ATATGTATTG
* * * *
918215 ATACATTGAAGAATATATTGATACATTTGAGCCATAAACCCAAAATCTATCA
1 ATACAATGAAAAATATATCGATACATTTGAGCCAAAAACCCAAAATCTATCA
* * * *
918267 ATACAATGAAATATATATCGATACATTTGGGCCAAAAACCCAGAATGTATCA
1 ATACAATGAAAAATATATCGATACATTTGAGCCAAAAACCCAAAATCTATCA
*
918319 ATACAATGAAAAATGTATCGATACAT
1 ATACAATGAAAAATATATCGATACAT
918345 ATTCTTTCTA
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
52 68 1.00
ACGTcount: A:0.45, C:0.16, G:0.12, T:0.27
Consensus pattern (52 bp):
ATACAATGAAAAATATATCGATACATTTGAGCCAAAAACCCAAAATCTATCA
Found at i:918427 original size:20 final size:20
Alignment explanation
Indices: 918402--918444 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
918392 ACATTTCTGA
918402 TATGCATCGATAAATTCACT
1 TATGCATCGATAAATTCACT
*
918422 TATGCATCGATACATTCACT
1 TATGCATCGATAAATTCACT
918442 TAT
1 TAT
918445 TGTATCAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.33, C:0.21, G:0.09, T:0.37
Consensus pattern (20 bp):
TATGCATCGATAAATTCACT
Found at i:922170 original size:32 final size:32
Alignment explanation
Indices: 922075--922171 Score: 78
Period size: 32 Copynumber: 3.2 Consensus size: 32
922065 TTGAGGTTTA
** *
922075 TATATAAATTTTAACATTTTAATAATTTATTT
1 TATATAAATTTTAACACATGAATAATTTATTT
* * *** *
922107 TATATATATTTT--GACATG--TTCCTT-TTG
1 TATATAAATTTTAACACATGAATAATTTATTT
922134 TATATAAATTTTAACACATGAATAATTTATTT
1 TATATAAATTTTAACACATGAATAATTTATTT
922166 TATATA
1 TATATA
922172 TTTTTTACAT
Statistics
Matches: 45, Mismatches: 15, Indels: 10
0.64 0.21 0.14
Matches are distributed among these distances:
27 13 0.29
28 3 0.07
29 5 0.11
30 2 0.04
31 3 0.07
32 19 0.42
ACGTcount: A:0.37, C:0.06, G:0.04, T:0.53
Consensus pattern (32 bp):
TATATAAATTTTAACACATGAATAATTTATTT
Found at i:923671 original size:11 final size:11
Alignment explanation
Indices: 923639--923671 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
923629 TAATATTAAT
923639 TTTTTATATTA
1 TTTTTATATTA
923650 TATTTTA-ATTA
1 T-TTTTATATTA
923661 TTTTTATATTA
1 TTTTTATATTA
923672 AGATCGTATA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
10 5 0.25
11 10 0.50
12 5 0.25
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (11 bp):
TTTTTATATTA
Found at i:923827 original size:27 final size:27
Alignment explanation
Indices: 923797--923904 Score: 102
Period size: 27 Copynumber: 4.1 Consensus size: 27
923787 AACTTATTCG
*
923797 TATTATATTAATATTATTTTTTATATT
1 TATTATATTTATATTATTTTTTATATT
* *
923824 TATTAAATTTAT-TTATTTTTATAAATT
1 TATTATATTTATATTATTTTT-TATATT
*
923851 TA-TATATTTATATTATATTTATATTATT
1 TATTATATTTATATTAT-TTTTTA-TATT
923879 T-TTATATTT-TATT-TTATTTTA-ATT
1 TATTATATTTATATTATT-TTTTATATT
923903 TA
1 TA
923905 AGTTTTTTGT
Statistics
Matches: 67, Mismatches: 7, Indels: 16
0.74 0.08 0.18
Matches are distributed among these distances:
24 4 0.06
25 1 0.01
26 21 0.31
27 27 0.40
28 14 0.21
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (27 bp):
TATTATATTTATATTATTTTTTATATT
Found at i:923833 original size:18 final size:18
Alignment explanation
Indices: 923812--923861 Score: 59
Period size: 19 Copynumber: 2.8 Consensus size: 18
923802 TATTAATATT
923812 ATTTTTTATATTTATTAA
1 ATTTTTTATATTTATTAA
*
923830 ATTTATTTATTTTTA-TAA
1 ATTT-TTTATATTTATTAA
*
923848 A-TTTATATATTTAT
1 ATTTTTTATATTTAT
923862 ATTATATTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
16 8 0.30
17 2 0.07
18 8 0.30
19 9 0.33
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (18 bp):
ATTTTTTATATTTATTAA
Found at i:927541 original size:2 final size:2
Alignment explanation
Indices: 927534--927559 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
927524 TTATTCTTAT
927534 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
927560 GAGTTTACTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:927663 original size:22 final size:21
Alignment explanation
Indices: 927621--927663 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
927611 TATTTTAAAA
* *
927621 TTTTTTATAAATTTAATATAT
1 TTTTTTATAAATTAAAAATAT
927642 TTTTTTAGTAAATTAAAAATAT
1 TTTTTTA-TAAATTAAAAATAT
927664 AATGCATTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (21 bp):
TTTTTTATAAATTAAAAATAT
Found at i:928171 original size:22 final size:24
Alignment explanation
Indices: 928134--928182 Score: 66
Period size: 22 Copynumber: 2.1 Consensus size: 24
928124 ACTGAATGTT
928134 AATTGTTTAAATTTTTAAAACTTA
1 AATTGTTTAAATTTTTAAAACTTA
* *
928158 AATT-TTT-AATTTTTATAATTTA
1 AATTGTTTAAATTTTTAAAACTTA
928180 AAT
1 AAT
928183 AAGTATAATC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 16 0.70
23 3 0.13
24 4 0.17
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (24 bp):
AATTGTTTAAATTTTTAAAACTTA
Done.