genome.fa.s386.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold386
Parameters: 2 7 7 80 10 50 1000
Length:  157506

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4650--4699	18	2.8	18	87	6	66	8	44	2	46	1.44
4656--4774	42	2.8	42	92	0	193	9	45	1	43	1.46
4689--4764	12	6.9	11	75	15	52	9	48	2	39	1.49
4680--4765	24	3.8	24	72	17	85	10	45	2	41	1.51
4667--4744	9	9.0	9	69	8	54	10	43	2	43	1.52
4667--4741	18	3.8	18	71	19	60	10	42	2	44	1.53
12559--12634	12	6.9	11	75	15	52	39	2	48	9	1.49
12558--12643	24	3.8	24	72	17	85	41	2	45	10	1.51
12549--12667	42	2.8	42	92	0	193	42	2	46	8	1.47
31125--31166	20	2.1	20	86	0	57	76	4	11	7	1.15
31843--31918	12	6.9	11	75	15	52	39	2	48	9	1.49
31842--31927	24	3.8	24	72	17	85	41	2	45	10	1.51
31833--31951	42	2.8	42	90	0	193	43	2	45	8	1.47
40819--40938	43	2.8	42	89	2	186	42	2	46	8	1.47
44688--44807	43	2.8	42	89	2	186	42	2	46	8	1.47
48569--48688	43	2.8	42	89	2	186	42	2	46	8	1.47
52451--52570	43	2.8	42	89	2	186	42	2	46	8	1.47
60941--61012	28	2.6	28	82	6	83	15	18	6	59	1.57
70401--70502	38	2.7	38	93	1	179	30	12	20	36	1.90
72033--72396	182	2.0	181	97	0	683	20	28	14	36	1.92
74426--74501	12	6.9	11	75	15	52	39	2	48	9	1.49
74425--74510	24	3.8	24	72	17	85	41	2	45	10	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74446--74523	9	9.0	9	69	8	54	43	2	43	10	1.52
74449--74523	18	3.8	18	71	19	60	44	2	42	10	1.53
74416--74534	42	2.8	42	92	0	193	43	1	45	9	1.46
74491--74540	18	2.8	18	87	6	66	46	2	44	8	1.44
79332--79407	12	6.9	11	75	15	52	39	2	48	9	1.49
79331--79416	24	3.8	24	72	17	85	41	2	45	10	1.51
79322--79440	42	2.8	42	92	0	193	42	2	46	8	1.47
82343--82414	12	6.5	11	75	16	53	40	1	47	11	1.48
82333--82412	42	1.9	42	92	0	133	43	1	46	8	1.42
82372--82442	33	2.2	33	92	0	115	40	1	46	11	1.48
82333--82421	42	2.1	42	87	0	124	44	1	43	10	1.45
91688--91805	42	2.8	42	90	1	184	8	46	2	42	1.47
96655--96715	9	7.1	9	70	10	56	13	42	0	44	1.43
96660--96736	12	6.9	12	74	24	71	12	45	0	41	1.43
96627--96745	42	2.8	42	92	0	184	10	44	0	43	1.45
99319--99437	42	2.8	42	89	0	184	8	45	2	43	1.47
99343--99428	24	3.8	24	69	17	76	10	44	2	43	1.51
100174--100210	15	2.5	15	90	0	65	0	16	2	81	0.81
100738--101365	315	2.0	315	97	0	1193	27	27	12	32	1.93
105376--105559	51	3.6	51	82	1	210	29	13	13	44	1.81
111897--111946	18	2.7	19	79	11	52	6	44	4	46	1.47
111903--112021	42	2.8	42	90	0	184	8	45	2	43	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111936--112011	12	6.9	11	75	15	52	9	48	2	39	1.49
111927--112012	24	3.8	24	72	17	85	10	45	2	41	1.51
111918--111988	18	3.6	18	69	20	52	9	43	2	43	1.52
114822--114897	12	6.9	11	75	15	52	39	2	48	9	1.49
114821--114906	24	3.8	24	72	17	85	41	2	45	10	1.51
114812--114930	42	2.8	42	92	0	193	42	2	46	8	1.47
122141--122370	79	2.9	79	82	3	257	32	15	25	26	1.95
122302--122421	51	2.4	51	82	2	152	31	13	26	28	1.94
122404--122479	28	2.8	27	92	6	118	25	18	32	23	1.97
122463--122578	51	2.3	51	89	0	178	27	12	29	31	1.92
122561--122633	28	2.6	28	81	10	87	28	17	31	21	1.97
122296--122687	158	2.5	156	86	2	527	31	12	27	27	1.93
122463--122684	51	4.3	51	71	12	171	30	11	28	29	1.92
129534--129625	24	4.2	23	72	18	79	43	2	44	9	1.49
129534--129643	42	2.6	42	92	0	184	41	2	46	9	1.50
136814--136893	30	2.7	30	92	3	126	8	45	3	42	1.53
136839--136878	21	1.9	21	89	0	62	10	42	2	45	1.51
139076--139787	156	4.6	155	80	6	715	38	17	16	28	1.91
152498--152582	1	85.0	1	80	0	98	0	1	8	90	0.50
152498--152579	10	8.5	10	86	8	116	0	1	8	90	0.51
152498--152582	25	3.4	25	85	1	109	0	1	8	90	0.50
152498--152579	39	2.1	39	93	2	139	0	1	8	90	0.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
155969--155994	13	2.0	13	100	0	52	38	15	15	30	1.88

Tables:   1

The End!