Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold388
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 417701
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
File 1 of 3
Found at i:7734 original size:16 final size:17
Alignment explanation
Indices: 7713--7750 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
7703 TATGTTTTTG
7713 AAATTTTT-TTATTGTT
1 AAATTTTTATTATTGTT
*
7729 AAATTTTTATTATTTTT
1 AAATTTTTATTATTGTT
7746 AAATT
1 AAATT
7751 AAATTTTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 8 0.40
17 12 0.60
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.66
Consensus pattern (17 bp):
AAATTTTTATTATTGTT
Found at i:11877 original size:35 final size:38
Alignment explanation
Indices: 11832--11906 Score: 113
Period size: 35 Copynumber: 2.1 Consensus size: 38
11822 ATATAAAAAT
11832 AATATAATTAATATAAT-ATTTATAA-ATTTT-T-TTTA
1 AATATAATTAATATAATAATTT-TAATATTTTGTATTTA
11867 AATATAATTAATATAATAATTTTAATATTTTGTATTTA
1 AATATAATTAATATAATAATTTTAATATTTTGTATTTA
11905 AA
1 AA
11907 ATTTTAATAT
Statistics
Matches: 36, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
35 20 0.56
36 9 0.25
37 1 0.03
38 6 0.17
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (38 bp):
AATATAATTAATATAATAATTTTAATATTTTGTATTTA
Found at i:13279 original size:2 final size:2
Alignment explanation
Indices: 13272--13299 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
13262 ATCTATCTTG
13272 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
13300 CACACACACC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:14798 original size:30 final size:30
Alignment explanation
Indices: 14726--14801 Score: 100
Period size: 30 Copynumber: 2.5 Consensus size: 30
14716 TTGATTTATG
* *
14726 TTAAAAGTTTATTTAAGTATAAATTTAAAA
1 TTAAAAGTTTATTTGAGTATAAATTAAAAA
* *
14756 TT-AACGTCTTATTTGTGTATAAATTAAAAA
1 TTAAAAGT-TTATTTGAGTATAAATTAAAAA
14786 TTAAAAGTTTATTTGA
1 TTAAAAGTTTATTTGA
14802 ATAAATATTA
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
29 4 0.11
30 30 0.79
31 4 0.11
ACGTcount: A:0.43, C:0.03, G:0.09, T:0.45
Consensus pattern (30 bp):
TTAAAAGTTTATTTGAGTATAAATTAAAAA
Found at i:14812 original size:30 final size:30
Alignment explanation
Indices: 14726--14813 Score: 92
Period size: 30 Copynumber: 2.9 Consensus size: 30
14716 TTGATTTATG
*
14726 TTAAAAGTTTATTT-AAGTATAAATTTAAAA
1 TTAAAAGTTTATTTGAA-TATAAATTAAAAA
* **
14756 TT-AACGTCTTATTTGTGTATAAATTAAAAA
1 TTAAAAGT-TTATTTGAATATAAATTAAAAA
14786 TTAAAAGTTTATTTGAATA-AATATTAAA
1 TTAAAAGTTTATTTGAATATAA-ATTAAA
14814 GGTCAAGGAT
Statistics
Matches: 47, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
29 6 0.13
30 37 0.79
31 4 0.09
ACGTcount: A:0.47, C:0.02, G:0.08, T:0.43
Consensus pattern (30 bp):
TTAAAAGTTTATTTGAATATAAATTAAAAA
Found at i:15260 original size:26 final size:28
Alignment explanation
Indices: 15231--15282 Score: 72
Period size: 26 Copynumber: 1.9 Consensus size: 28
15221 TATATTTGAC
*
15231 AAAATTCAGTA-AAT-TAATAAATATAT
1 AAAATTCAATATAATATAATAAATATAT
*
15257 AAAATTCAATATTATATAATAAATAT
1 AAAATTCAATATAATATAATAAATAT
15283 GAGTTGATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 10 0.45
27 2 0.09
28 10 0.45
ACGTcount: A:0.58, C:0.04, G:0.02, T:0.37
Consensus pattern (28 bp):
AAAATTCAATATAATATAATAAATATAT
Found at i:15811 original size:18 final size:19
Alignment explanation
Indices: 15788--15823 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
15778 TAGTTAAATT
15788 ATTTATTTAAT-TTTAAAG
1 ATTTATTTAATATTTAAAG
15806 ATTTATTTAATATTTAAA
1 ATTTATTTAATATTTAAA
15824 ATAATTTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.56
Consensus pattern (19 bp):
ATTTATTTAATATTTAAAG
Found at i:15850 original size:19 final size:19
Alignment explanation
Indices: 15826--15866 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
15816 TATTTAAAAT
*
15826 AATTTAAATAA-AAATATTA
1 AATTTAAAAAATAAAT-TTA
15845 AATTTAAAAAATAAATTTA
1 AATTTAAAAAATAAATTTA
15864 AAT
1 AAT
15867 AAAATATTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (19 bp):
AATTTAAAAAATAAATTTA
Found at i:15871 original size:31 final size:35
Alignment explanation
Indices: 15821--15896 Score: 108
Period size: 35 Copynumber: 2.3 Consensus size: 35
15811 TTTAATATTT
15821 AAAAT-AATTTAAATAAAAATATT-A-A-ATTTAA
1 AAAATAAATTTAAATAAAAATATTAACATATTTAA
15852 AAAATAAATTTAAAT-AAAATATTAAACATATTTAA
1 AAAATAAATTTAAATAAAAATATT-AACATATTTAA
15887 AAAATAAATT
1 AAAATAAATT
15897 GAGTCTTAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
31 13 0.32
32 9 0.22
33 1 0.03
34 1 0.03
35 16 0.40
ACGTcount: A:0.64, C:0.01, G:0.00, T:0.34
Consensus pattern (35 bp):
AAAATAAATTTAAATAAAAATATTAACATATTTAA
Found at i:16122 original size:15 final size:14
Alignment explanation
Indices: 16090--16142 Score: 52
Period size: 16 Copynumber: 3.6 Consensus size: 14
16080 TAATAAAAAT
* *
16090 ATTAAATTATTAAG
1 ATTAAATTTTTAAA
16104 ATTAAATCTTTTAAA
1 ATTAAAT-TTTTAAA
16119 ATTATATATTTTTAAA
1 ATTA-A-ATTTTTAAA
*
16135 AATAAATT
1 ATTAAATT
16143 AAAAAAATAA
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
14 10 0.30
15 10 0.30
16 11 0.33
17 2 0.06
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (14 bp):
ATTAAATTTTTAAA
Found at i:19708 original size:20 final size:20
Alignment explanation
Indices: 19666--19720 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
19656 AAATTCCCAG
**
19666 ATGTATCGATACAAAGATCA
1 ATGTATCGATACATTGATCA
19686 ATGTATCGATACATTGAGT-A
1 ATGTATCGATACATTGA-TCA
*
19706 ATGTATCGAAACATT
1 ATGTATCGATACATT
19721 TCCTTGGCAG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
20 30 0.97
21 1 0.03
ACGTcount: A:0.40, C:0.13, G:0.16, T:0.31
Consensus pattern (20 bp):
ATGTATCGATACATTGATCA
Found at i:19774 original size:19 final size:17
Alignment explanation
Indices: 19750--19812 Score: 62
Period size: 19 Copynumber: 3.7 Consensus size: 17
19740 AGCGATACAT
19750 TGTATCGATACAAAACTTA
1 TGTATCGATAC-AAAC-TA
19769 TGTATCGATAC--AC--
1 TGTATCGATACAAACTA
19782 TGTATCGATACAACACTAA
1 TGTATCGATACAA-ACT-A
19801 TGTATCGATACA
1 TGTATCGATACA
19813 GTTACTGTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 11 0.29
16 4 0.11
19 23 0.61
ACGTcount: A:0.38, C:0.19, G:0.13, T:0.30
Consensus pattern (17 bp):
TGTATCGATACAAACTA
Found at i:19778 original size:32 final size:32
Alignment explanation
Indices: 19742--19812 Score: 115
Period size: 32 Copynumber: 2.2 Consensus size: 32
19732 AGCTTCGTAG
* *
19742 CGATACATTGTATCGATACAAAACTTATGTAT
1 CGATACACTGTATCGATACAAAACTAATGTAT
*
19774 CGATACACTGTATCGATACAACACTAATGTAT
1 CGATACACTGTATCGATACAAAACTAATGTAT
19806 CGATACA
1 CGATACA
19813 GTTACTGTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.38, C:0.20, G:0.13, T:0.30
Consensus pattern (32 bp):
CGATACACTGTATCGATACAAAACTAATGTAT
Found at i:21809 original size:18 final size:20
Alignment explanation
Indices: 21788--21837 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 20
21778 CTAAATAGAT
21788 ATTTAACTATTG-ATT-TTA
1 ATTTAACTATTGAATTGTTA
*
21806 ATTTAATTATTGCAATTGTTA
1 ATTTAACTATTG-AATTGTTA
*
21827 ATTTTACTATT
1 ATTTAACTATT
21838 ATAATGATTA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
18 11 0.42
20 3 0.12
21 12 0.46
ACGTcount: A:0.32, C:0.06, G:0.06, T:0.56
Consensus pattern (20 bp):
ATTTAACTATTGAATTGTTA
Found at i:23818 original size:179 final size:178
Alignment explanation
Indices: 23492--23848 Score: 525
Period size: 179 Copynumber: 2.0 Consensus size: 178
23482 ATTTTTCACC
* * **
23492 AAAATAAAATATCAAATCTATTAAAATTTTGAGTTAAGATTGTTTTTTGATTTTGATTCAGTTGG
1 AAAATAAAATATCAAATCTATTAAAATTTTAAGTTAAGATTGTTTTTTGATTTTAACACAGTTGG
* * ** *
23557 AGTTACGTTAAGTTAACAAGATTAAGAACATCATAAAATATTATATTATTTTGATTTTAAATTAC
66 AGTTACGTTAAGTTAACAAGATTAAGAAAATCATAAAATATTAAATTATTTCAATTTTAAATTAA
* *
23622 TTTAAATTGTGTCAAGTTTGATATTAAATTATTTCACTTTCAAAACTT
131 TTTAAATCGTATCAAGTTTGATATTAAATTATTTCACTTTCAAAACTT
* *
23670 AAAATAAAATATCAAAGTCTATTAGAATTTTAAGTTAAGATTGTTTTTTGGTTTTAACACAGTTG
1 AAAATAAAATATCAAA-TCTATTAAAATTTTAAGTTAAGATTGTTTTTTGATTTTAACACAGTTG
* * * *
23735 GAGTTATGTTAGGTTAATAAGATTAAGAAAATCATAAAATATTAAATTATTTCAATTTTAAGTTA
65 GAGTTACGTTAAGTTAACAAGATTAAGAAAATCATAAAATATTAAATTATTTCAATTTTAAATTA
* * *
23800 ATTTAAATCGTATCAAGTTTGATATTGAGTTATTTTACTTTCAAAACTT
130 ATTTAAATCGTATCAAGTTTGATATTAAATTATTTCACTTTCAAAACTT
23849 TTAAATTTAG
Statistics
Matches: 158, Mismatches: 20, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
178 16 0.10
179 142 0.90
ACGTcount: A:0.39, C:0.07, G:0.11, T:0.43
Consensus pattern (178 bp):
AAAATAAAATATCAAATCTATTAAAATTTTAAGTTAAGATTGTTTTTTGATTTTAACACAGTTGG
AGTTACGTTAAGTTAACAAGATTAAGAAAATCATAAAATATTAAATTATTTCAATTTTAAATTAA
TTTAAATCGTATCAAGTTTGATATTAAATTATTTCACTTTCAAAACTT
Found at i:26488 original size:2 final size:2
Alignment explanation
Indices: 26481--26510 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
26471 TATTCAGAGA
26481 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26511 CGTCCTTAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:26944 original size:2 final size:2
Alignment explanation
Indices: 26937--26964 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
26927 CTTCTTTCTT
26937 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
26965 AAATGTTGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:29232 original size:3 final size:3
Alignment explanation
Indices: 29224--29251 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
29214 AGCTATTTAG
29224 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
29252 TTGCAGTGAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:30220 original size:20 final size:19
Alignment explanation
Indices: 30174--30230 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 19
30164 TTGTATCGAT
* *
30174 ACATTATATCGATACATGT
1 ACATTGTATCGATACATGG
*
30193 TCATTGTATCGATACATGG
1 ACATTGTATCGATACATGG
30212 ACAATTGTATCGATACATG
1 AC-ATTGTATCGATACATG
30231 AAATTGGCAG
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
19 17 0.52
20 16 0.48
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (19 bp):
ACATTGTATCGATACATGG
Found at i:30296 original size:13 final size:13
Alignment explanation
Indices: 30280--30305 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
30270 CATGGTATAA
30280 TGTATCGATACAT
1 TGTATCGATACAT
30293 TGTATCGATACAT
1 TGTATCGATACAT
30306 AATGAATTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:30297 original size:20 final size:20
Alignment explanation
Indices: 30260--30297 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
30250 TACCACTGTT
*
30260 TGTATCGATGCATGGTATAA
1 TGTATCGATACATGGTATAA
*
30280 TGTATCGATACATTGTAT
1 TGTATCGATACATGGTAT
30298 CGATACATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.39
Consensus pattern (20 bp):
TGTATCGATACATGGTATAA
Found at i:35812 original size:18 final size:19
Alignment explanation
Indices: 35771--35813 Score: 79
Period size: 19 Copynumber: 2.3 Consensus size: 19
35761 ATTCAACGAT
35771 TTGTATCGATACATAAGTG
1 TTGTATCGATACATAAGTG
35790 TTGTATCGATACATAAG-G
1 TTGTATCGATACATAAGTG
35808 TTGTAT
1 TTGTAT
35814 AGACACAATG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 7 0.29
19 17 0.71
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (19 bp):
TTGTATCGATACATAAGTG
Found at i:37696 original size:13 final size:13
Alignment explanation
Indices: 37678--37704 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
37668 ACATTATGCT
37678 TTGTATCGATACA
1 TTGTATCGATACA
37691 TTGTATCGATACA
1 TTGTATCGATACA
37704 T
1 T
37705 GCTCATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:37713 original size:19 final size:19
Alignment explanation
Indices: 37689--37782 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
37679 TGTATCGATA
37689 CATTGTATCGATACATGCT
1 CATTGTATCGATACATGCT
37708 CATTGTATCGATACATGCT
1 CATTGTATCGATACATGCT
37727 CATTGTATCGATACATGCT
1 CATTGTATCGATACATGCT
**
37746 CATTGTATCGATACATGGA
1 CATTGTATCGATACATGCT
37765 CAATTGTATCGATACATG
1 C-ATTGTATCGATACATG
37783 AGATTGGCAG
Statistics
Matches: 72, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
19 56 0.78
20 16 0.22
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (19 bp):
CATTGTATCGATACATGCT
Found at i:40796 original size:27 final size:27
Alignment explanation
Indices: 40758--40832 Score: 96
Period size: 27 Copynumber: 2.8 Consensus size: 27
40748 TTTTCCTTTA
40758 AAGTCCACAACTTTGTGGCACCCCTAT
1 AAGTCCACAACTTTGTGGCACCCCTAT
* * *
40785 AAGTCCACAACTTCGTGGCACCCTTTT
1 AAGTCCACAACTTTGTGGCACCCCTAT
* * *
40812 AAGCCCACAACTCTATGGCAC
1 AAGTCCACAACTTTGTGGCAC
40833 ACTTTTTCCT
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.27, C:0.35, G:0.15, T:0.24
Consensus pattern (27 bp):
AAGTCCACAACTTTGTGGCACCCCTAT
Found at i:40856 original size:34 final size:34
Alignment explanation
Indices: 40806--40904 Score: 128
Period size: 34 Copynumber: 2.9 Consensus size: 34
40796 TTCGTGGCAC
* *
40806 CCTTTTAAGCCCACAACTCTATGGCACACTTTTT
1 CCTTTTAAGTCCACAACTCCATGGCACACTTTTT
* * *
40840 CCTTTTAAGTCTACAACTCCGTGGCACTCTTTTT
1 CCTTTTAAGTCCACAACTCCATGGCACACTTTTT
* *
40874 CCTTTTAAGTCCACAACTTCGTGGCAC-CTTT
1 CCTTTTAAGTCCACAACTCCATGGCACACTTT
40905 AAGACCAATG
Statistics
Matches: 58, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
33 4 0.07
34 54 0.93
ACGTcount: A:0.20, C:0.31, G:0.11, T:0.37
Consensus pattern (34 bp):
CCTTTTAAGTCCACAACTCCATGGCACACTTTTT
Found at i:41016 original size:49 final size:49
Alignment explanation
Indices: 40901--41733 Score: 650
Period size: 49 Copynumber: 17.8 Consensus size: 49
40891 TTCGTGGCAC
* *
40901 CTTTAAGACCAATGTCGCTGGCCTTGAATCACCACATTAGCA-C-----
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTAT
* * *
40944 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTAT
40993 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-C-----
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTAT
* * * *
41036 CTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTTTTCAT
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC--TTT-AT
* *
41088 CTTTAAGACCAATGTCGATGGCCTTTAATCAGCACATTGGCACC--T-T
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTAT
* * * *
41134 C---AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCAT
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTAT
*
41180 CTTTAAGACCAATGTCGCTGGCCTTGAATCGGCACATTGGCA-C---A-
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTAT
* * *
41224 -TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCATCTTTAT
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTAT
*
41272 CTTTAAGACCAATGTTGCTGGCCTTGAATCAGCACATTGG---C---A-
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTAT
* * * * *
41314 C---AAGCCCAGTATCGCTGGCCTTGAATCAGCATATTGACACCTTTAT
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTAT
* *
41360 CTTTAAGACCAATGTTGCTGGCCTTGAATTAGCACATTGG---C---A-
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTAT
* * * * *
41402 C---AAGCCCAGTATCGCTGGCCTTGAATTAGCATATTGGCACCTTTAT
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTAT
* * * * **
41448 CTTTAAGACCGATGTCGTTGGCCTTGAATCAGCACATCGGTACCTCAACCAT
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCT---TTAT
* * * * *
41500 CTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCA-CATCAT
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTAT
* *
41548 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCAT
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTAT
* * * * * * * * * *
41597 CCTTAAGTCCCATATCGTTGGCCTTGAATCAACATATTGCCATCTTTAA
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTAT
* *
41646 CATTCCTAAGCCCAATGTCGCTAGCCTT--ATCTTAGCACATTGGCA--TTCT-T
1 C-TT--TAAGACCAATGTCGCTGGCCTTGAATC--AGCACATTGGCACCTT-TAT
* * * * *
41696 CTTCAAGTCTAATGTCGCTGGCCATGAACCAGCACATT
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATT
41734 ATCATTCTTC
Statistics
Matches: 629, Mismatches: 102, Indels: 114
0.74 0.12 0.13
Matches are distributed among these distances:
39 61 0.10
42 4 0.01
43 150 0.24
44 3 0.00
45 3 0.00
46 8 0.01
47 26 0.04
48 45 0.07
49 219 0.35
50 7 0.01
51 2 0.00
52 101 0.16
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (49 bp):
CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTAT
Found at i:41038 original size:21 final size:20
Alignment explanation
Indices: 41014--41081 Score: 50
Period size: 21 Copynumber: 3.2 Consensus size: 20
41004 ATGTCGCTGG
41014 CCTTGAATCAGCACATTGGCA
1 CCTTGAATCAGCA-ATTGGCA
* *
41035 CCTTTAAGTC--CAATATCGCTA
1 CCTTGAA-TCAGCAAT-TGGC-A
41056 GCCTTGAATCAGCATATTGGCA
1 -CCTTGAATCAGCA-ATTGGCA
41078 CCTT
1 CCTT
41082 TTTCATCTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 14
0.67 0.07 0.26
Matches are distributed among these distances:
19 2 0.06
20 5 0.14
21 13 0.36
22 9 0.25
23 5 0.14
24 2 0.06
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.29
Consensus pattern (20 bp):
CCTTGAATCAGCAATTGGCA
Found at i:41060 original size:92 final size:92
Alignment explanation
Indices: 40901--41690 Score: 981
Period size: 92 Copynumber: 8.5 Consensus size: 92
40891 TTCGTGGCAC
* *
40901 CTTTAAGACCAATGTCGCTGGCCTTGAATCACCACATTAGCACCTTTAAGTCCAATATCGCTGGC
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGC
40966 CTTGAATCAGCATATTGGCACCTTTAT
66 CTTGAATCAGCATATTGGCACCTTTAT
*
40993 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTAGC
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGC
41058 CTTGAATCAGCATATTGGCACCTTTTTCAT
66 CTTGAATCAGCATATTGGCACC--TTT-AT
* * *
41088 CTTTAAGACCAATGTCGATGGCCTTTAATCAGCACATTGGCACCTTCAAGTCCAATATCGCTGGC
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGC
*
41153 CTTGAATCAGCATATTGGCACCTTCAT
66 CTTGAATCAGCATATTGGCACCTTTAT
* * *
41180 CTTTAAGACCAATGTCGCTGGCCTTGAATCGGCACATTGGCACATTTAAGTCCAATGTCGCTGGC
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGC
*
41245 CTTGAATCAGCATATTGGCATCTTTAT
66 CTTGAATCAGCATATTGGCACCTTTAT
* * *
41272 CTTTAAGACCAATGTTGCTGGCCTTGAATCAGCACATTGGCA-C---AAGCCCAGTATCGCTGGC
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGC
*
41333 CTTGAATCAGCATATTGACACCTTTAT
66 CTTGAATCAGCATATTGGCACCTTTAT
* * * *
41360 CTTTAAGACCAATGTTGCTGGCCTTGAATTAGCACATTGGCA-C---AAGCCCAGTATCGCTGGC
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGC
*
41421 CTTGAATTAGCATATTGGCACCTTTAT
66 CTTGAATCAGCATATTGGCACCTTTAT
* * * *
41448 CTTTAAGACCGATGTCGTTGGCCTTGAATCAGCACATCGGTACCTCAACCATCTTTAAGCCCAAT
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGG-----C-A-C--CTTTAAGTCCAAT
* *
41513 ATCGCTGGCCTTGAATCAGCATATTGGCA-CATCAT
57 ATCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* *
41548 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCCTTAAGTCCCATATC
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-C--C-T--TTAAGTCCAATATC
* * * * *
41613 GTTGGCCTTGAATCAACATATTGCCATCTTTAA
60 GCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* *
41646 CATTCCTAAGCCCAATGTCGCTAGCCTT--ATCTTAGCACATTGGCA
1 C-TT--TAAGACCAATGTCGCTGGCCTTGAATC--AGCACATTGGCA
41691 TTCTTCTTCA
Statistics
Matches: 622, Mismatches: 51, Indels: 41
0.87 0.07 0.06
Matches are distributed among these distances:
88 160 0.26
92 210 0.34
93 3 0.00
94 9 0.01
95 87 0.14
97 35 0.06
98 5 0.01
99 5 0.01
100 40 0.06
101 68 0.11
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (92 bp):
CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGC
CTTGAATCAGCATATTGGCACCTTTAT
Found at i:41342 original size:39 final size:39
Alignment explanation
Indices: 41288--41441 Score: 137
Period size: 39 Copynumber: 3.7 Consensus size: 39
41278 GACCAATGTT
41288 GCTGGCCTTGAATCAGCACATTGGCACAAGCCCAGTATC
1 GCTGGCCTTGAATCAGCACATTGGCACAAGCCCAGTATC
* * * * * *
41327 GCTGGCCTTGAATCAGCATATTGACACCTTTATCTTTAAGACCAATGTT
1 GCTGGCCTTGAATCAGCACATTG---GC---A-C---AAGCCCAGTATC
*
41376 GCTGGCCTTGAATTAGCACATTGGCACAAGCCCAGTATC
1 GCTGGCCTTGAATCAGCACATTGGCACAAGCCCAGTATC
* *
41415 GCTGGCCTTGAATTAGCATATTGGCAC
1 GCTGGCCTTGAATCAGCACATTGGCAC
41442 CTTTATCTTT
Statistics
Matches: 91, Mismatches: 14, Indels: 20
0.73 0.11 0.16
Matches are distributed among these distances:
39 56 0.62
42 2 0.02
43 1 0.01
45 1 0.01
46 2 0.02
49 29 0.32
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.27
Consensus pattern (39 bp):
GCTGGCCTTGAATCAGCACATTGGCACAAGCCCAGTATC
Found at i:41688 original size:149 final size:147
Alignment explanation
Indices: 41413--41733 Score: 351
Period size: 149 Copynumber: 2.2 Consensus size: 147
41403 AAGCCCAGTA
* * * * * *
41413 TCGCTGGCCTTGAATTAGCATATTGGCACCTTTATCTTTAAGACCGATGTCGTTGGCCTTGAATC
1 TCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCCTTAAGACCCATATCGTTGGCCTTGAATC
* ** * * *
41478 AGCACATCGGTACCTCAACCATCTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCAC
66 AACACATCGCCACCTCAACCATCTCTAAGCCCAATATCGCTAGCCTT-AATCAGCACATTGGCA-
*
41543 ATCATCTTTAAGTCCAATG
129 ATCATCTTCAAGTCCAATG
*
41562 TCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCCTTAAGTCCCATATCGTTGGCCTTGAATC
1 TCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCCTTAAGACCCATATCGTTGGCCTTGAATC
* * * * *
41627 AACATATTGCCATCTTTAA-CAT-TCCTAAGCCCAATGTCGCTAGCCTT-ATCTTAGCACATTGG
66 AACACATCGCCA-CCTCAACCATCT-CTAAGCCCAATATCGCTAGCCTTAATC--AGCACATTGG
* * *
41689 CATTCTTCTTCAAGTCTAATG
127 CAATCATCTTCAAGTCCAATG
* *
41710 TCGCTGGCCATGAACCAGCACATT
1 TCGCTGGCCTTGAATCAGCACATT
41734 ATCATTCTTC
Statistics
Matches: 144, Mismatches: 24, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
147 3 0.02
148 38 0.26
149 99 0.69
150 4 0.03
ACGTcount: A:0.24, C:0.28, G:0.17, T:0.31
Consensus pattern (147 bp):
TCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCCTTAAGACCCATATCGTTGGCCTTGAATC
AACACATCGCCACCTCAACCATCTCTAAGCCCAATATCGCTAGCCTTAATCAGCACATTGGCAAT
CATCTTCAAGTCCAATG
Found at i:42623 original size:13 final size:13
Alignment explanation
Indices: 42605--42632 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
42595 CATTATTCAA
42605 TGTATCGATACAT
1 TGTATCGATACAT
42618 TGTATCGATACAT
1 TGTATCGATACAT
42631 TG
1 TG
42633 ATCTTTGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:42627 original size:33 final size:33
Alignment explanation
Indices: 42585--42650 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
42575 GCCAAGGAAA
42585 TGTATCGATACATT-ATTCAATGTATCGATACAT
1 TGTATCGATACATTGA-TCAATGTATCGATACAT
**
42618 TGTATCGATACATTGATCTTTGTATCGATACAT
1 TGTATCGATACATTGATCAATGTATCGATACAT
42651 CTGGAAATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 29 0.97
34 1 0.03
ACGTcount: A:0.30, C:0.15, G:0.14, T:0.41
Consensus pattern (33 bp):
TGTATCGATACATTGATCAATGTATCGATACAT
Found at i:49615 original size:15 final size:14
Alignment explanation
Indices: 49579--49626 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
49569 GAGTTCCCTT
**
49579 AAAAAAAAGGAAC-
1 AAAAAAAACAAACA
49592 AAAAAAAACAAAACA
1 AAAAAAAAC-AAACA
*
49607 AAAAAAAACACACA
1 AAAAAAAACAAACA
49621 AAAAAA
1 AAAAAA
49627 GAGTGCAAAG
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
13 8 0.27
14 13 0.43
15 9 0.30
ACGTcount: A:0.83, C:0.12, G:0.04, T:0.00
Consensus pattern (14 bp):
AAAAAAAACAAACA
Found at i:49896 original size:16 final size:16
Alignment explanation
Indices: 49875--49910 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 16
49865 CCCAACACAA
49875 AAAAAAAGACAAAA-AG
1 AAAAAAA-ACAAAACAG
49891 AAAAAAAACAAAACAG
1 AAAAAAAACAAAACAG
49907 AAAA
1 AAAA
49911 TTTCGGTGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 6 0.32
16 13 0.68
ACGTcount: A:0.83, C:0.08, G:0.08, T:0.00
Consensus pattern (16 bp):
AAAAAAAACAAAACAG
Found at i:51037 original size:61 final size:61
Alignment explanation
Indices: 50908--51122 Score: 216
Period size: 61 Copynumber: 3.4 Consensus size: 61
50898 ATCTCTCTTC
* ** * * * *
50908 TCAAAGTCCACGACTCAGTGGCATTTGTTTTCCTCAAAGTCCATGACTCAATGGCATCTTTTCA
1 TCAAAGTCCACAACTCAGTGGCACCTCTTTT-CT--AAGTCCATGACTCAGTGGCATTTTTTCT
*
50972 TCAAAGTCCACAACTCAGTGGCACCTCTTTTCTAAGTCCACGACTCAGTGGCATTTTTTCT
1 TCAAAGTCCACAACTCAGTGGCACCTCTTTTCTAAGTCCATGACTCAGTGGCATTTTTTCT
* * * *
51033 TCAAAGTCCACGACTCAGTGGCATCATTTTCTTCCAAGTCCATGACTCAGTGGCATCTTTTTCCT
1 TCAAAGTCCACAACTCAGTGGCA-CCTCTT-TTCTAAGTCCATGACTCAGTGGCAT-TTTTT-CT
** *
51098 TTTAAGTCCACAGCTTC-GTGGCACC
1 TCAAAGTCCACAAC-TCAGTGGCACC
51123 CTTATAAGTC
Statistics
Matches: 128, Mismatches: 18, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
61 46 0.36
62 4 0.03
63 25 0.20
64 33 0.26
65 18 0.14
66 2 0.02
ACGTcount: A:0.23, C:0.29, G:0.16, T:0.33
Consensus pattern (61 bp):
TCAAAGTCCACAACTCAGTGGCACCTCTTTTCTAAGTCCATGACTCAGTGGCATTTTTTCT
Found at i:51072 original size:32 final size:32
Alignment explanation
Indices: 50908--51095 Score: 233
Period size: 31 Copynumber: 6.0 Consensus size: 32
50898 ATCTCTCTTC
* *
50908 TCAAAGTCCACGACTCAGTGGCATTTGTTTTCC
1 TCAAAGTCCACGACTCAGTGGCATCT-TTTTCT
* * *
50941 TCAAAGTCCATGACTCAATGGCATC-TTTTCA
1 TCAAAGTCCACGACTCAGTGGCATCTTTTTCT
* *
50972 TCAAAGTCCACAACTCAGTGGCACCTCTTTTC-
1 TCAAAGTCCACGACTCAGTGGCATCT-TTTTCT
51004 T--AAGTCCACGACTCAGTGGCAT-TTTTTCT
1 TCAAAGTCCACGACTCAGTGGCATCTTTTTCT
*
51033 TCAAAGTCCACGACTCAGTGGCATCATTTTCT
1 TCAAAGTCCACGACTCAGTGGCATCTTTTTCT
* *
51065 TCCAAGTCCATGACTCAGTGGCATCTTTTTC
1 TCAAAGTCCACGACTCAGTGGCATCTTTTTC
51096 CTTTTAAGTC
Statistics
Matches: 135, Mismatches: 14, Indels: 13
0.83 0.09 0.08
Matches are distributed among these distances:
28 5 0.04
29 2 0.01
30 19 0.14
31 47 0.35
32 35 0.26
33 27 0.20
ACGTcount: A:0.23, C:0.28, G:0.15, T:0.33
Consensus pattern (32 bp):
TCAAAGTCCACGACTCAGTGGCATCTTTTTCT
Found at i:51189 original size:87 final size:86
Alignment explanation
Indices: 51077--51241 Score: 240
Period size: 87 Copynumber: 1.9 Consensus size: 86
51067 CAAGTCCATG
* * **
51077 ACTCAGTGGCATCTTTTTCCTTTTAAGTCCACAGCTTCGTGGCACCCTTATAAGTCCACAACTTT
1 ACTCAGTGGCATCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCCTTATAAGTCCACAACTCC
51142 GTGGCACCCTTTTAAGCCAGA
66 GTGGCACCCTTTTAAGCCAGA
* * * *
51163 ACTCTGTGGCACTCTTTTTTCTTTTAAGTCCATAACTCCGTGGCACCCTTTTAAGTCCACAACTC
1 ACTCAGTGGCA-TCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCCTTATAAGTCCACAACTC
*
51228 CGTGGCACTCTTTT
65 CGTGGCACCCTTTT
51242 TCCTTTTAAG
Statistics
Matches: 69, Mismatches: 9, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
86 10 0.14
87 59 0.86
ACGTcount: A:0.20, C:0.30, G:0.15, T:0.35
Consensus pattern (86 bp):
ACTCAGTGGCATCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCCTTATAAGTCCACAACTCC
GTGGCACCCTTTTAAGCCAGA
Found at i:51191 original size:60 final size:61
Alignment explanation
Indices: 51122--51270 Score: 228
Period size: 61 Copynumber: 2.5 Consensus size: 61
51112 TTCGTGGCAC
* * * *
51122 CCTTATAAGTCCACAACTTTGTGGCACCCTTTTAAG-CCAGAACTCTGTGGCACTCTTTTT
1 CCTTTTAAGTCCACAACTCTGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACTCTTTTT
* * *
51182 TCTTTTAAGTCCATAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACTCTTTTT
1 CCTTTTAAGTCCACAACTCTGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACTCTTTTT
51243 CCTTTTAAGTCCACAACTCTGTGGCACC
1 CCTTTTAAGTCCACAACTCTGTGGCACC
51271 TTTAAGACCA
Statistics
Matches: 78, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
60 31 0.40
61 47 0.60
ACGTcount: A:0.21, C:0.31, G:0.14, T:0.34
Consensus pattern (61 bp):
CCTTTTAAGTCCACAACTCTGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACTCTTTTT
Found at i:51206 original size:34 final size:32
Alignment explanation
Indices: 50975--51273 Score: 179
Period size: 27 Copynumber: 9.8 Consensus size: 32
50965 CTTTTCATCA
*
50975 AAGTCCACAACTCAGTGGCACCTCTTTTC---T
1 AAGTCCACAACTCCGTGGCACCT-TTTTCTTTT
* * * **
51005 AAGTCCACGACTCAGTGGCA-TTTTTTCTTCA
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTT
* * * * **
51036 AAGTCCACGACTCAGTGGCATCATTTTCTTCC
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTT
** * *
51068 AAGTCCATGACTCAGTGGCATCTTTTTCCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTT-CTTTT
* * *
51101 AAGTCCACAGCTTCGTGGCACC-----CTTAT
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTT
**
51128 AAGTCCACAACTTTGTGGCACC-----CTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTT
* *
51155 AAG-CCAGAACTCTGTGGCACTCTTTTTTCTTTT
1 AAGTCCACAACTCCGTGGCAC-C-TTTTTCTTTT
*
51188 AAGTCCATAACTCCGTGGCACC-----CTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCTTTT
51215 AAGTCCACAACTCCGTGGCACTCTTTTTCCTTTT
1 AAGTCCACAACTCCGTGGCAC-CTTTTT-CTTTT
*
51249 AAGTCCACAACTCTGTGGCACCTTT
1 AAGTCCACAACTCCGTGGCACCTTT
51274 AAGACCAATA
Statistics
Matches: 223, Mismatches: 26, Indels: 37
0.78 0.09 0.13
Matches are distributed among these distances:
26 15 0.07
27 57 0.26
28 6 0.03
29 1 0.00
30 19 0.09
31 20 0.09
32 33 0.15
33 32 0.14
34 40 0.18
ACGTcount: A:0.21, C:0.30, G:0.15, T:0.34
Consensus pattern (32 bp):
AAGTCCACAACTCCGTGGCACCTTTTTCTTTT
Found at i:51325 original size:43 final size:43
Alignment explanation
Indices: 51264--52056 Score: 506
Period size: 43 Copynumber: 17.2 Consensus size: 43
51254 CACAACTCTG
* *
51264 TGGCACCTTTAAGACCAATATCGCTAGCCTTGAATCAGTACAT
1 TGGCACCTTTAAGACCAATATCGCTGGCCTTGAATCAGCACAT
* *
51307 TGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATAT
1 TGGCACCTTTAAGACCAATATCGCTGGCCTTGAATCAGCACAT
* *
51350 TGACACCTTTATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACAT
1 TGGCA-C-----CTTTAAGACCAATATCGCTGGCCTTGAATCAGCACAT
* * * * *
51399 TGGCACCTTTAAGTCCAATATCACTGGCCTTAAATTAGCATAT
1 TGGCACCTTTAAGACCAATATCGCTGGCCTTGAATCAGCACAT
* * *
51442 TGGCACCTTTTCATCTTTAAAACCAATGTCGCTGGTCTTGAATCAGCACAT
1 TGGCA------C--CTTTAAGACCAATATCGCTGGCCTTGAATCAGCACAT
* *
51493 TGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATAT
1 TGGCACCTTTAAGACCAATATCGCTGGCCTTGAATCAGCACAT
* *
51536 TGGCACATTTTTCATCTTTAAGACCAATGTCGCTGGCCTTTAATCAGCACAT
1 TGG--CA-----C--CTTTAAGACCAATATCGCTGGCCTTGAATCAGCACAT
* * * * *
51588 TAGCACCTTCAAGTCCAATATCGTTGGCCTTGAATCAGCATAT
1 TGGCACCTTTAAGACCAATATCGCTGGCCTTGAATCAGCACAT
* *
51631 TGGCACCTTCATCTTTAAGACCAATGTCACTGGCCTTGAAT-AGGCACAT
1 TGGCA----C--CTTTAAGACCAATATCGCTGGCCTTGAATCA-GCACAT
* * *
51680 TGGCACCTTTAAGTCTAATATCGCTGGCCTTGAATCAGCATAT
1 TGGCACCTTTAAGACCAATATCGCTGGCCTTGAATCAGCACAT
* *
51723 TGGCATCTTTATTTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACAT
1 TGGCA-C-----CTTTAAGACCAATATCGCTGGCCTTGAATCAGCACAT
* * *
51772 TGGCA-C---AAGCCCAGTATCGCTGGCCTTGAATCAGCATAT
1 TGGCACCTTTAAGACCAATATCGCTGGCCTTGAATCAGCACAT
* *
51811 TGACACCTTTATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACAT
1 TGGCA-C-----CTTTAAGACCAATATCGCTGGCCTTGAATCAGCACAT
* * *
51860 TGGCA-C---AAGCCCAGTATCGCTGGCCTTGAATCAGCATAT
1 TGGCACCTTTAAGACCAATATCGCTGGCCTTGAATCAGCACAT
* * * *
51899 TAGCACCTTTATCTTTAAGACCGATGTCGTTGGCCTTGAATCAGCACAT
1 TGGCA-C-----CTTTAAGACCAATATCGCTGGCCTTGAATCAGCACAT
* * * *
51948 CGGCACCTCAACCATCTTTAAGCCCAATATCGCTGGCCTTGAATCTGCATAT
1 TGG-----C-A-C--CTTTAAGACCAATATCGCTGGCCTTGAATCAGCACAT
* * * *
52000 TGGCACATCATCTTTAAGTCCAATGTCGCTAGCCTTGAATCAACACAT
1 TGG--CA-C--CTTTAAGACCAATATCGCTGGCCTTGAATCAGCACAT
*
52048 TAGCACCTT
1 TGGCACCTT
52057 CATTCTTAAG
Statistics
Matches: 591, Mismatches: 96, Indels: 126
0.73 0.12 0.15
Matches are distributed among these distances:
39 66 0.11
42 1 0.00
43 187 0.32
44 3 0.01
45 6 0.01
46 4 0.01
47 1 0.00
48 39 0.07
49 173 0.29
50 3 0.01
51 34 0.06
52 70 0.12
54 1 0.00
55 3 0.01
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.30
Consensus pattern (43 bp):
TGGCACCTTTAAGACCAATATCGCTGGCCTTGAATCAGCACAT
Found at i:51385 original size:49 final size:49
Alignment explanation
Indices: 51313--52192 Score: 645
Period size: 49 Copynumber: 18.7 Consensus size: 49
51303 ACATTGGCAC
* *
51313 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGACACCTTTAT
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* *
51362 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-C-----
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* * * *
51405 CTTTAAGTCCAATATCACTGGCCTTAAATTAGCATATTGGCACCTTTTCAT
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACC-TTT-AT
** * *
51456 CTTTAAAACCAATGTCGCTGGTCTTGAATCAGCACATTGGCA-C-----
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* *
51499 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACATTTTTCAT
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCAC--CTTT-AT
* * * *
51551 CTTTAAGACCAATGTCGCTGGCCTTTAATCAGCACATTAGCACC--T-T
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* * *
51597 C---AAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCACCTTCAT
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* * *
51643 CTTTAAGACCAATGTCACTGGCCTTGAAT-AGGCACATTGGCA-C-----
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCA-GCATATTGGCACCTTTAT
* * *
51686 CTTTAAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTTAT
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* * *
51735 TTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGG---C---A-
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* * * *
51777 C---AAGCCCAGTATCGCTGGCCTTGAATCAGCATATTGACACCTTTAT
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* *
51823 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGG---C---A-
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* * * *
51865 C---AAGCCCAGTATCGCTGGCCTTGAATCAGCATATTAGCACCTTTAT
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* * * * * **
51911 CTTTAAGACCGATGTCGTTGGCCTTGAATCAGCACATCGGCACCTCAACCAT
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCT---TTAT
* * * * *
51963 CTTTAAGCCCAATATCGCTGGCCTTGAATCTGCATATTGGCA-CATCAT
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* * * * *
52011 CTTTAAGTCCAATGTCGCTAGCCTTGAATCAACACATTAGCACCTTCAT
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* * * * * * *
52060 -TCTTAAGTCCGATATCGTTGGCCTTGAATCAACATATTAGCATCTTTAA
1 CT-TTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* **
52109 CATTCCTAAGCCCAATGTCGCTGGCCTTGTCTCAGCATATTGGCA--TTCT-T
1 C-TT--TAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTT-TAT
* * * *
52159 CTTCAAGTCTAATGTCGCTGGCCATGAACCAGCA
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCA
52193 CATTATCATT
Statistics
Matches: 651, Mismatches: 119, Indels: 124
0.73 0.13 0.14
Matches are distributed among these distances:
39 62 0.10
42 3 0.00
43 144 0.22
44 3 0.00
45 2 0.00
46 8 0.01
47 24 0.04
48 43 0.07
49 214 0.33
50 5 0.01
51 37 0.06
52 106 0.16
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (49 bp):
CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
Found at i:51427 original size:92 final size:92
Alignment explanation
Indices: 51270--52153 Score: 1027
Period size: 92 Copynumber: 9.5 Consensus size: 92
51260 TCTGTGGCAC
* * *
51270 CTTTAAGACCAATATCGCTAGCCTTGAATCAGTACATTGGCACCTTTAAGTCCAATATCGCTGGC
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGC
51335 CTTGAATCAGCATATTGACACCTTTAT
66 CTTGAATCAGCATATTGACACCTTTAT
*
51362 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCACTGGC
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGC
* * *
51427 CTTAAATTAGCATATTGGCACCTTTTCAT
66 CTTGAATCAGCATATTGACACC-TTT-AT
* *
51456 CTTTAAAACCAATGTCGCTGGTCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGC
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGC
**
51521 CTTGAATCAGCATATTGGCACATTTTTCAT
66 CTTGAATCAGCATATT-G-ACACCTTT-AT
* * * *
51551 CTTTAAGACCAATGTCGCTGGCCTTTAATCAGCACATTAGCACCTTCAAGTCCAATATCGTTGGC
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGC
* *
51616 CTTGAATCAGCATATTGGCACCTTCAT
66 CTTGAATCAGCATATTGACACCTTTAT
* *
51643 CTTTAAGACCAATGTCACTGGCCTTGAAT-AGGCACATTGGCACCTTTAAGTCTAATATCGCTGG
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCA-GCACATTGGCACCTTTAAGTCCAATATCGCTGG
* *
51707 CCTTGAATCAGCATATTGGCATCTTTAT
65 CCTTGAATCAGCATATTGACACCTTTAT
* * *
51735 TTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-C---AAGCCCAGTATCGCTGGC
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGC
51796 CTTGAATCAGCATATTGACACCTTTAT
66 CTTGAATCAGCATATTGACACCTTTAT
* *
51823 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-C---AAGCCCAGTATCGCTGGC
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGC
51884 CTTGAATCAGCATATT-AGCACCTTTAT
66 CTTGAATCAGCATATTGA-CACCTTTAT
* * * *
51911 CTTTAAGACCGATGTCGTTGGCCTTGAATCAGCACATCGGCACCTCAACCATCTTTAAGCCCAAT
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGG-----C-A-C--CTTTAAGTCCAAT
* * * *
51976 ATCGCTGGCCTTGAATCTGCATATTGGCA-CATCAT
57 ATCGCTGGCCTTGAATCAGCATATTGACACCTTTAT
* * * * *
52011 CTTTAAGTCCAATGTCGCTAGCCTTGAATCAACACATTAGCACCTTCATTCTTAAGTCCGATATC
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-C--C--T-TTAAGTCCAATATC
* * * *
52076 GTTGGCCTTGAATCAACATATT-AGCATCTTTAA
60 GCTGGCCTTGAATCAGCATATTGA-CACCTTTAT
* ** *
52109 CATTCCTAAGCCCAATGTCGCTGGCCTTGTCTCAGCATATTGGCA
1 C-TT--TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
52154 TTCTTCTTCA
Statistics
Matches: 690, Mismatches: 73, Indels: 49
0.85 0.09 0.06
Matches are distributed among these distances:
87 1 0.00
88 162 0.23
91 2 0.00
92 202 0.29
93 9 0.01
94 85 0.12
95 83 0.12
96 3 0.00
97 33 0.05
98 5 0.01
99 2 0.00
100 37 0.05
101 66 0.10
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (92 bp):
CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGC
CTTGAATCAGCATATTGACACCTTTAT
Found at i:51803 original size:39 final size:39
Alignment explanation
Indices: 51749--51904 Score: 159
Period size: 39 Copynumber: 3.7 Consensus size: 39
51739 AAGACCAATG
51749 TCGCTGGCCTTGAATCAGCACATTGGCACAAGCCCAGTA
1 TCGCTGGCCTTGAATCAGCACATTGGCACAAGCCCAGTA
* * * * *
51788 TCGCTGGCCTTGAATCAGCATATTGACACCTTTATCTTTAAGACCAATG
1 TCGCTGGCCTTGAATCAGCACATTG---GC---A-C---AAGCCCAGTA
51837 TCGCTGGCCTTGAATCAGCACATTGGCACAAGCCCAGTA
1 TCGCTGGCCTTGAATCAGCACATTGGCACAAGCCCAGTA
* *
51876 TCGCTGGCCTTGAATCAGCATATTAGCAC
1 TCGCTGGCCTTGAATCAGCACATTGGCAC
51905 CTTTATCTTT
Statistics
Matches: 95, Mismatches: 12, Indels: 20
0.75 0.09 0.16
Matches are distributed among these distances:
39 58 0.61
42 2 0.02
43 1 0.01
45 1 0.01
46 2 0.02
49 31 0.33
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (39 bp):
TCGCTGGCCTTGAATCAGCACATTGGCACAAGCCCAGTA
Found at i:52054 original size:100 final size:101
Alignment explanation
Indices: 51866--52101 Score: 275
Period size: 100 Copynumber: 2.4 Consensus size: 101
51856 ACATTGGCAC
* * * * * *
51866 AAGCCCAGTATCGCTGGCCTTGAATCAGCATATTAGCACCTTTATCTTTAAGACCGATGTCGTTG
1 AAGCCCAATATCGCTGGCCTTGAATCAGCATATTAGCACCATCATCTTTAAGACCAATGTCGCTA
* *
51931 GCCTTGAATCAGCACATCGGCACCTCAACCATCTTT
66 GCCTTGAATCAACACATCAGCACCTCAACCATCTTT
* * *
51967 AAGCCCAATATCGCTGGCCTTGAATCTGCATATTGGCA-CATCATCTTTAAGTCCAATGTCGCTA
1 AAGCCCAATATCGCTGGCCTTGAATCAGCATATTAGCACCATCATCTTTAAGACCAATGTCGCTA
* *
52031 GCCTTGAATCAACACATTAGCACCT---TCAT-TCTT
66 GCCTTGAATCAACACATCAGCACCTCAACCATCT-TT
* * * *
52064 AAGTCCGATATCGTTGGCCTTGAATCAACATATTAGCA
1 AAGCCCAATATCGCTGGCCTTGAATCAGCATATTAGCA
52102 TCTTTAACAT
Statistics
Matches: 115, Mismatches: 19, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
96 1 0.01
97 37 0.32
100 42 0.37
101 35 0.30
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.30
Consensus pattern (101 bp):
AAGCCCAATATCGCTGGCCTTGAATCAGCATATTAGCACCATCATCTTTAAGACCAATGTCGCTA
GCCTTGAATCAACACATCAGCACCTCAACCATCTTT
Found at i:52147 original size:149 final size:148
Alignment explanation
Indices: 51876--52197 Score: 380
Period size: 149 Copynumber: 2.2 Consensus size: 148
51866 AAGCCCAGTA
* * *
51876 TCGCTGGCCTTGAATCAGCATATTAGCACCTTTATCTTTAAGACCGATGTCGTTGGCCTTGAATC
1 TCGCTGGCCTTGAATCAGCACATTAGCACCTTCATCTTTAAGACCGATATCGTTGGCCTTGAATC
* * * *
51941 AGCACATCGGCACCTCAACCATCTTTAAGCCCAATATCGCTGGCCTTGAATCTGCATATTGGCAC
66 AACACATCAGCACCTCAACCATCTCTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCA-
*
52006 ATCATCTTTAAGTCCAATG
130 ATCATCTTCAAGTCCAATG
* * *
52025 TCGCTAGCCTTGAATCAACACATTAGCACCTTCAT-TCTTAAGTCCGATATCGTTGGCCTTGAAT
1 TCGCTGGCCTTGAATCAGCACATTAGCACCTTCATCT-TTAAGACCGATATCGTTGGCCTTGAAT
* * * * * **
52089 CAACATATTAGCATCTTTAA-CAT-TCCTAAGCCCAATGTCGCTGGCCTTGTCTCAGCATATTGG
65 CAACACATCAGCA-CCTCAACCATCT-CTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGG
* * *
52152 CATTCTTCTTCAAGTCTAATG
128 CAATCATCTTCAAGTCCAATG
* *
52173 TCGCTGGCCATGAACCAGCACATTA
1 TCGCTGGCCTTGAATCAGCACATTA
52198 TCATTCTTCG
Statistics
Matches: 145, Mismatches: 25, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
148 38 0.26
149 103 0.71
150 4 0.03
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.31
Consensus pattern (148 bp):
TCGCTGGCCTTGAATCAGCACATTAGCACCTTCATCTTTAAGACCGATATCGTTGGCCTTGAATC
AACACATCAGCACCTCAACCATCTCTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCAA
TCATCTTCAAGTCCAATG
Found at i:53014 original size:19 final size:19
Alignment explanation
Indices: 52990--53052 Score: 75
Period size: 19 Copynumber: 3.6 Consensus size: 19
52980 AAACAGTAAA
52990 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGTGT
53009 TGTATCGATAC--AA----
1 TGTATCGATACATAAGTGT
*
53022 TGTAACGATACATAAGTGT
1 TGTATCGATACATAAGTGT
53041 TGTATCGATACA
1 TGTATCGATACA
53053 ATGTATCGAT
Statistics
Matches: 36, Mismatches: 2, Indels: 12
0.72 0.04 0.24
Matches are distributed among these distances:
13 10 0.28
15 2 0.06
17 2 0.06
19 22 0.61
ACGTcount: A:0.35, C:0.13, G:0.19, T:0.33
Consensus pattern (19 bp):
TGTATCGATACATAAGTGT
Found at i:53031 original size:32 final size:32
Alignment explanation
Indices: 52988--53092 Score: 157
Period size: 32 Copynumber: 3.4 Consensus size: 32
52978 ACAAACAGTA
52988 AATGTATCGATACATAAGTGTTGTATCGATAC
1 AATGTATCGATACATAAGTGTTGTATCGATAC
*
53020 AATGTAACGATACATAAGTGTTGTATCGATAC
1 AATGTATCGATACATAAGTGTTGTATCGATAC
53052 AATGTATCGATACATAA-----GTATCGATAC
1 AATGTATCGATACATAAGTGTTGTATCGATAC
*
53079 AATGTATCGCTACA
1 AATGTATCGATACA
53093 AAGCTACTGC
Statistics
Matches: 70, Mismatches: 3, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
27 23 0.33
32 47 0.67
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.31
Consensus pattern (32 bp):
AATGTATCGATACATAAGTGTTGTATCGATAC
Found at i:53074 original size:14 final size:13
Alignment explanation
Indices: 53009--53093 Score: 80
Period size: 13 Copynumber: 6.0 Consensus size: 13
52999 ACATAAGTGT
53009 TGTATCGATACAA
1 TGTATCGATACAA
*
53022 TGTAACGATACATAA
1 TGTATCGATAC--AA
53037 GTGTTGTATCGATACAA
1 ----TGTATCGATACAA
53054 TGTATCGATACATA
1 TGTATCGATACA-A
*
53068 AGTATCGATACAA
1 TGTATCGATACAA
*
53081 TGTATCGCTACAA
1 TGTATCGATACAA
53094 AGCTACTGCC
Statistics
Matches: 60, Mismatches: 5, Indels: 14
0.76 0.06 0.18
Matches are distributed among these distances:
13 34 0.57
14 12 0.20
15 2 0.03
17 2 0.03
19 10 0.17
ACGTcount: A:0.38, C:0.15, G:0.16, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:53149 original size:13 final size:13
Alignment explanation
Indices: 53131--53158 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
53121 CATTATTCAA
53131 TGTATCGATACAT
1 TGTATCGATACAT
53144 TGTATCGATACAT
1 TGTATCGATACAT
53157 TG
1 TG
53159 ATCTTTGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:53154 original size:33 final size:33
Alignment explanation
Indices: 53112--53176 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
53102 CCAAGGAAAC
53112 GTATCGATACATT-ATTCAATGTATCGATACATT
1 GTATCGATACATTGA-TCAATGTATCGATACATT
**
53145 GTATCGATACATTGATCTTTGTATCGATACAT
1 GTATCGATACATTGATCAATGTATCGATACAT
53177 CTGGAAATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 28 0.97
34 1 0.03
ACGTcount: A:0.31, C:0.15, G:0.14, T:0.40
Consensus pattern (33 bp):
GTATCGATACATTGATCAATGTATCGATACATT
Found at i:61545 original size:21 final size:22
Alignment explanation
Indices: 61519--61559 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
61509 AAATTCTTAA
61519 AAGA-GGAG-AAAATCTTTAATT
1 AAGAGGGAGTAAAA-CTTTAATT
61540 AAGAGGGAGTAAAACTTTAA
1 AAGAGGGAGTAAAACTTTAA
61560 CTTGAAAACT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 4 0.22
22 10 0.56
23 4 0.22
ACGTcount: A:0.49, C:0.05, G:0.22, T:0.24
Consensus pattern (22 bp):
AAGAGGGAGTAAAACTTTAATT
Found at i:62117 original size:19 final size:20
Alignment explanation
Indices: 62093--62146 Score: 74
Period size: 19 Copynumber: 2.8 Consensus size: 20
62083 ATATTATACT
*
62093 TTGTATCGATACATGCTC-A
1 TTGTATCGATACATGCACAA
* *
62112 TTGTATCAATACATGGACAA
1 TTGTATCGATACATGCACAA
62132 TTGTATCGATACATG
1 TTGTATCGATACATG
62147 AGATTGGTAG
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 15 0.50
20 15 0.50
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.35
Consensus pattern (20 bp):
TTGTATCGATACATGCACAA
Found at i:62221 original size:33 final size:34
Alignment explanation
Indices: 62175--62244 Score: 90
Period size: 33 Copynumber: 2.1 Consensus size: 34
62165 CTATCACTAT
* *
62175 TTGTATCGGTACATG-GGATAA-TGTATCGATATA
1 TTGTATCGATACATGAGGA-AATTGTATCGATACA
*
62208 TTGTATCGATACATGATGAAATTGTATCGATACA
1 TTGTATCGATACATGAGGAAATTGTATCGATACA
62242 TTG
1 TTG
62245 CTTGTAACGG
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
33 16 0.50
34 16 0.50
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.37
Consensus pattern (34 bp):
TTGTATCGATACATGAGGAAATTGTATCGATACA
Found at i:64065 original size:13 final size:13
Alignment explanation
Indices: 64047--64075 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
64037 CCAGATGTAT
64047 CATTGTATCGATA
1 CATTGTATCGATA
64060 CATTGTATCGATA
1 CATTGTATCGATA
64073 CAT
1 CAT
64076 GAGTTACTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (13 bp):
CATTGTATCGATA
Found at i:67889 original size:2 final size:2
Alignment explanation
Indices: 67878--67908 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
67868 TCTGATATCA
67878 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
67909 TTAAGTTCAA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:68202 original size:22 final size:23
Alignment explanation
Indices: 68174--68228 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
68164 GAAAGGCATG
*
68174 ATGCAGGTAT-ATGGTTGCAGAA
1 ATGCAGGTATCATGGGTGCAGAA
*
68196 ATGCAGGTATCGTGGGTGCAGAA
1 ATGCAGGTATCATGGGTGCAGAA
* *
68219 ACGCAAGTAT
1 ATGCAGGTAT
68229 TGCAGGTGCA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
22 10 0.36
23 18 0.64
ACGTcount: A:0.31, C:0.13, G:0.33, T:0.24
Consensus pattern (23 bp):
ATGCAGGTATCATGGGTGCAGAA
Found at i:69337 original size:16 final size:15
Alignment explanation
Indices: 69295--69337 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
69285 GTATAATTAA
69295 AATTTTTGTTAATATT
1 AATTTTT-TTAATATT
*
69311 TATTATTTTTAGATATT
1 AATT-TTTTTA-ATATT
69328 AATTTTTTTA
1 AATTTTTTTA
69338 CGTATTTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
16 12 0.52
17 11 0.48
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.65
Consensus pattern (15 bp):
AATTTTTTTAATATT
Found at i:69706 original size:108 final size:109
Alignment explanation
Indices: 69412--69886 Score: 479
Period size: 110 Copynumber: 4.3 Consensus size: 109
69402 AATTTAATTA
* ** * *
69412 CATTAATTACGTAAATTTGGGCACCAAAAGATTGGTCTCAAAATAAATTATCGTCTAGAGTCGTA
1 CATTAATTACGTAAATTCGGGCACCAAAAGATTGACCTCAAAATAAATCATCGTCTAGAGTCATA
** * * *
69477 AAGCGGTGTACGAATGCCCTTTACATACGATAATTCATTTTTTA
66 AAGCGACGTACGAACGCCCTTTATATACGATAATTCATTTTTTG
* * * ** *
69521 CATTAATTACATAATATTCAGGCACTAAGGGATTGACCTCAAAATAAATCATCGTCTAGAGTCGT
1 CATTAATTACGTAA-ATTCGGGCACCAAAAGATTGACCTCAAAATAAATCATCGTCTAGAGTCAT
* *
69586 AAAGCGACGTACGAACACCCTTTATATAGGATAATTCATTTTTTG
65 AAAGCGACGTACGAACGCCCTTTATATACGATAATTCATTTTTTG
* * * * **
69631 CATTAATTAC-TAAATTCGGGCACCAAAATATTGA-TTCCGAAATAAGTCATTATCTAGAGTCAT
1 CATTAATTACGTAAATTCGGGCACCAAAAGATTGACCT-CAAAATAAATCATCGTCTAGAGTCAT
* *
69694 AAAGCGACGTACGAACGCTCTTTATATATGATAATTCTATTTTTTG
65 AAAGCGACGTACGAACGCCCTTTATATACGATAATTC-ATTTTTTG
* * * **
69740 CATTAATTACGTAAATTCGAGCACCAAAAGATTGACCCCGAAATAGTTCATCGTCTAGAGTCATA
1 CATTAATTACGTAAATTCGGGCACCAAAAGATTGACCTCAAAATAAATCATCGTCTAGAGTCATA
* * ** * * *
69805 AAG-TAGTGTATAAACGCCCTTTATGTAAGGTAATTCATTTTTTG
66 AAGCGA-CGTACGAACGCCCTTTATATACGATAATTCATTTTTTG
** * ** * *
69849 TGTAAATTACACAATATTTGGGCACCAAGAGATTGACC
1 CATTAATTACGTAA-ATTCGGGCACCAAAAGATTGACC
69887 CCGAAATAGG
Statistics
Matches: 305, Mismatches: 54, Indels: 13
0.82 0.15 0.03
Matches are distributed among these distances:
107 1 0.00
108 71 0.23
109 52 0.17
110 181 0.59
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.32
Consensus pattern (109 bp):
CATTAATTACGTAAATTCGGGCACCAAAAGATTGACCTCAAAATAAATCATCGTCTAGAGTCATA
AAGCGACGTACGAACGCCCTTTATATACGATAATTCATTTTTTG
Found at i:69729 original size:218 final size:219
Alignment explanation
Indices: 69412--69807 Score: 512
Period size: 218 Copynumber: 1.8 Consensus size: 219
69402 AATTTAATTA
* * * *
69412 CATTAATTACGTAAATTTGGGCACCAAAAGATTGGTCTCAAAATAAATTATCGTCTAGAGTCGTA
1 CATTAATTACGTAAATTCGGGCACCAAAAGATTGGTCTCAAAATAAATCATCATCTAGAGTCATA
** *
69477 AAGCGGTGTACGAATGCCCTTTACATACGATAATTC-ATTTTTTACATTAATTACATAATATTC-
66 AAGCGACGTACGAACGCCCTTTACATACGATAATTCTATTTTTTACATTAATTACATAA-ATTCG
* ** * *
69540 AGGCACTAAGGGATTGACCTCAAAATAAATCATCGTCTAGAGTCGTAAAGCGACGTACGAACACC
130 A-GCACCAAAAGATTGACCCCAAAATAAATCATCGTCTAGAGTCATAAAGCGACGTACGAACACC
69605 CTTTATATAGGATAATTCATTTTTTG
194 CTTTATATAGGATAATTCATTTTTTG
* * * * *
69631 CATTAATTAC-TAAATTCGGGCACCAAAATATTGAT-TCCGAAATAAGTCATTATCTAGAGTCAT
1 CATTAATTACGTAAATTCGGGCACCAAAAGATTGGTCT-CAAAATAAATCATCATCTAGAGTCAT
* * * * *
69694 AAAGCGACGTACGAACGCTCTTTATATATGATAATTCTATTTTTTGCATTAATTACGTAAATTCG
65 AAAGCGACGTACGAACGCCCTTTACATACGATAATTCTATTTTTTACATTAATTACATAAATTCG
* **
69759 AGCACCAAAAGATTGACCCCGAAATAGTTCATCGTCTAGAGTCATAAAG
130 AGCACCAAAAGATTGACCCCAAAATAAATCATCGTCTAGAGTCATAAAG
69808 TAGTGTATAA
Statistics
Matches: 149, Mismatches: 25, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
217 1 0.01
218 117 0.79
219 31 0.21
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.32
Consensus pattern (219 bp):
CATTAATTACGTAAATTCGGGCACCAAAAGATTGGTCTCAAAATAAATCATCATCTAGAGTCATA
AAGCGACGTACGAACGCCCTTTACATACGATAATTCTATTTTTTACATTAATTACATAAATTCGA
GCACCAAAAGATTGACCCCAAAATAAATCATCGTCTAGAGTCATAAAGCGACGTACGAACACCCT
TTATATAGGATAATTCATTTTTTG
Found at i:73693 original size:21 final size:21
Alignment explanation
Indices: 73669--73715 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 21
73659 TGAGTTGATA
73669 TTAATAATCAAAAAT-T-TAAAT
1 TTAATAAT--AAAATGTATAAAT
*
73690 TTAATTATAAAATGTATAAAT
1 TTAATAATAAAATGTATAAAT
73711 TTAAT
1 TTAAT
73716 TTTTTTTAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 5 0.22
20 1 0.04
21 17 0.74
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (21 bp):
TTAATAATAAAATGTATAAAT
Found at i:74243 original size:18 final size:19
Alignment explanation
Indices: 74220--74261 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
74210 TTTTTAAAAA
74220 AAATAAAAATATAAA-A-TT
1 AAATAAAAAT-TAAATATTT
*
74238 AAATAATAATTAAATATTT
1 AAATAAAAATTAAATATTT
74257 AAATA
1 AAATA
74262 GATATTGAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 4 0.19
18 10 0.48
19 7 0.33
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (19 bp):
AAATAAAAATTAAATATTT
Found at i:75872 original size:2 final size:2
Alignment explanation
Indices: 75865--75909 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
75855 AATCCAATTA
75865 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
75907 AT A
1 AT A
75910 AAATAATGCT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:76159 original size:19 final size:17
Alignment explanation
Indices: 76119--76159 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 17
76109 TATTATATAT
76119 TTATATTTAAAATTTTA
1 TTATATTTAAAATTTTA
*
76136 ATATATTTAATAATTTTTA
1 TTATATTTAA-AA-TTTTA
76155 TTATA
1 TTATA
76160 CATTTGTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
17 9 0.45
18 2 0.10
19 9 0.45
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
TTATATTTAAAATTTTA
Found at i:78462 original size:13 final size:13
Alignment explanation
Indices: 78446--78489 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
78436 TTAAATTAAT
78446 TAAAAAAATAAAA
1 TAAAAAAATAAAA
**
78459 T-AAATTATAAAA
1 TAAAAAAATAAAA
*
78471 TTAAAAAATAAAA
1 TAAAAAAATAAAA
78484 TAAAAA
1 TAAAAA
78490 TAATTACATA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
12 10 0.40
13 15 0.60
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (13 bp):
TAAAAAAATAAAA
Found at i:78464 original size:18 final size:18
Alignment explanation
Indices: 78438--78492 Score: 58
Period size: 18 Copynumber: 2.9 Consensus size: 18
78428 TTTCAACTTT
*
78438 AAATTAATTAAAAA-AATA
1 AAATAAATTAAAAATAA-A
78456 AAATAAATTATAAAATTAAA
1 AAATAAATTA-AAAA-TAAA
*
78476 AAATAAAATAAAAATAA
1 AAATAAATTAAAAATAA
78493 TTACATATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
18 12 0.38
19 8 0.25
20 10 0.31
21 2 0.06
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (18 bp):
AAATAAATTAAAAATAAA
Found at i:78488 original size:12 final size:12
Alignment explanation
Indices: 78448--78489 Score: 57
Period size: 12 Copynumber: 3.4 Consensus size: 12
78438 AAATTAATTA
78448 AAAAAATAAAAT
1 AAAAAATAAAAT
**
78460 AAATTATAAAATT
1 AAAAAATAAAA-T
78473 AAAAAATAAAAT
1 AAAAAATAAAAT
78485 AAAAA
1 AAAAA
78490 TAATTACATA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
12 15 0.60
13 10 0.40
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (12 bp):
AAAAAATAAAAT
Found at i:78538 original size:25 final size:23
Alignment explanation
Indices: 78510--78556 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
78500 TTTTAATATT
*
78510 TTATATAATTTATTTTTATAAAAAA
1 TTAT-TAATTTACTTTTA-AAAAAA
*
78535 TTATTTATTTACTTTTAAAAAA
1 TTATTAATTTACTTTTAAAAAA
78557 TTCAACACCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 5 0.25
24 11 0.55
25 4 0.20
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (23 bp):
TTATTAATTTACTTTTAAAAAAA
Found at i:78542 original size:20 final size:21
Alignment explanation
Indices: 78517--78558 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
78507 ATTTTATATA
78517 ATTTATTT-TTATAAAAAATT
1 ATTTATTTATTATAAAAAATT
*
78537 ATTTATTTACTTTTAAAAAATT
1 ATTTATTTA-TTATAAAAAATT
78559 CAACACCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 8 0.42
22 11 0.58
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (21 bp):
ATTTATTTATTATAAAAAATT
Found at i:78760 original size:3 final size:3
Alignment explanation
Indices: 78752--78783 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
78742 ATAAAAATTA
*
78752 ATT ATT ATT ATT ACT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
78784 CATCATCGTC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:79243 original size:22 final size:23
Alignment explanation
Indices: 79216--79264 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 23
79206 AAAGACAAGG
*
79216 GAAAGAGGGAAAGGCT-GAAAGA
1 GAAAGAAGGAAAGGCTAGAAAGA
**
79238 GAAAGAAGGAAAGTTTAGAAAGA
1 GAAAGAAGGAAAGGCTAGAAAGA
79261 GAAA
1 GAAA
79265 CAAAATCCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 13 0.57
23 10 0.43
ACGTcount: A:0.55, C:0.02, G:0.35, T:0.08
Consensus pattern (23 bp):
GAAAGAAGGAAAGGCTAGAAAGA
Found at i:82150 original size:3 final size:3
Alignment explanation
Indices: 82142--82179 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
82132 TCAGAGGAAC
82142 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
82180 ATAATTGACG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:83461 original size:34 final size:33
Alignment explanation
Indices: 83417--83633 Score: 249
Period size: 34 Copynumber: 6.4 Consensus size: 33
83407 AAAAACCACT
*
83417 ATTTAATCAACAATGGCAACCTACCAAATCTACC
1 ATTTAATCAACAATGGTAACCTACCAAATC-ACC
*
83451 ATTTAGTCAACAATGGTAAGCC-ACCAAATCACCC
1 ATTTAATCAACAATGGTAA-CCTACCAAATCA-CC
* * **
83485 ATTTAATCAATAATGGTAAGCTACCAAATTTCTC
1 ATTTAATCAACAATGGTAACCTACCAAATCAC-C
* *
83519 ATTTAATCAACAATGGTAAGCTACCAAATCTCCC
1 ATTTAATCAACAATGGTAACCTACCAAATC-ACC
* *
83553 ATTTAGTCAACAATGGCAAACC-ACCAAATCACCC
1 ATTTAATCAACAATGG-TAACCTACCAAATCA-CC
* *
83587 ATTTAATCAATAATGGTAAACTACCAAATCACC
1 ATTTAATCAACAATGGTAACCTACCAAATCACC
83620 ATTTAATCAACAAT
1 ATTTAATCAACAAT
83634 TCTCCCACTT
Statistics
Matches: 156, Mismatches: 19, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
33 21 0.13
34 129 0.83
35 6 0.04
ACGTcount: A:0.41, C:0.25, G:0.08, T:0.26
Consensus pattern (33 bp):
ATTTAATCAACAATGGTAACCTACCAAATCACC
Found at i:83529 original size:68 final size:67
Alignment explanation
Indices: 83417--83633 Score: 283
Period size: 68 Copynumber: 3.2 Consensus size: 67
83407 AAAAACCACT
* * *
83417 ATTTAATCAACAATGGCAACCTACCAAATCTACCATTTAGTCAACAATGGTAAGCCACCAAATCA
1 ATTTAATCAACAATGGCAAACTACCAAAT-TACCATTTAATCAACAATGGTAAGCTACCAAATCA
83482 CCC
65 CCC
* * * * *
83485 ATTTAATCAATAATGGTAAGCTACCAAATTTCTCATTTAATCAACAATGGTAAGCTACCAAATCT
1 ATTTAATCAACAATGGCAAACTACCAAATTAC-CATTTAATCAACAATGGTAAGCTACCAAATCA
83550 CCC
65 CCC
* * * * *
83553 ATTTAGTCAACAATGGCAAACCACCAAATCACCCATTTAATCAATAATGGTAAACTACCAAATCA
1 ATTTAATCAACAATGGCAAACTACCAAATTA-CCATTTAATCAACAATGGTAAGCTACCAAATCA
83618 -CC
65 CCC
83620 ATTTAATCAACAAT
1 ATTTAATCAACAAT
83634 TCTCCCACTT
Statistics
Matches: 129, Mismatches: 18, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
67 17 0.13
68 111 0.86
69 1 0.01
ACGTcount: A:0.41, C:0.25, G:0.08, T:0.26
Consensus pattern (67 bp):
ATTTAATCAACAATGGCAAACTACCAAATTACCATTTAATCAACAATGGTAAGCTACCAAATCAC
CC
Found at i:83557 original size:102 final size:101
Alignment explanation
Indices: 83417--83633 Score: 353
Period size: 102 Copynumber: 2.1 Consensus size: 101
83407 AAAAACCACT
* *
83417 ATTTAATCAACAATGGCAACCTACCAAATCTACCATTTAGTCAACAATGGTAAGCCACCAAATCA
1 ATTTAATCAACAATGGCAACCTACCAAATCTACCATTTAGTCAACAATGGCAAACCACCAAATCA
* **
83482 CCCATTTAATCAATAATGGTAAGCTACCAAATTTCTC
66 CCCATTTAATCAATAATGGTAAACTACCAAATCAC-C
* * *
83519 ATTTAATCAACAATGGTAAGCTACCAAATCTCCCATTTAGTCAACAATGGCAAACCACCAAATCA
1 ATTTAATCAACAATGGCAACCTACCAAATCTACCATTTAGTCAACAATGGCAAACCACCAAATCA
83584 CCCATTTAATCAATAATGGTAAACTACCAAATCACC
66 CCCATTTAATCAATAATGGTAAACTACCAAATCACC
83620 ATTTAATCAACAAT
1 ATTTAATCAACAAT
83634 TCTCCCACTT
Statistics
Matches: 107, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
101 15 0.14
102 92 0.86
ACGTcount: A:0.41, C:0.25, G:0.08, T:0.26
Consensus pattern (101 bp):
ATTTAATCAACAATGGCAACCTACCAAATCTACCATTTAGTCAACAATGGCAAACCACCAAATCA
CCCATTTAATCAATAATGGTAAACTACCAAATCACC
Found at i:88090 original size:34 final size:33
Alignment explanation
Indices: 88042--88260 Score: 253
Period size: 34 Copynumber: 6.5 Consensus size: 33
88032 TGGTAAAAAC
*
88042 CACCATTTAATCAACAATGGCAACCTACCAAAT
1 CACCATTTAATCAACAATGGTAACCTACCAAAT
*
88075 CTACCATTTAGTCAACAATGGTAAGCC-ACCAAAT
1 C-ACCATTTAATCAACAATGGTAA-CCTACCAAAT
* *
88109 CACCCATTTAATCAATAATGGTAAGCTACCAAAT
1 CA-CCATTTAATCAACAATGGTAACCTACCAAAT
** *
88143 TTCTCATTTAATCAACAATGGTAAGCTACCAAAT
1 CAC-CATTTAATCAACAATGGTAACCTACCAAAT
* * *
88177 CTCCCATTTAGTCAACAATGGCAAACC-ACCAAAT
1 C-ACCATTTAATCAACAATGG-TAACCTACCAAAT
* *
88211 CACCCATTTAATCAATAATGGTAAACTACCAAAT
1 CA-CCATTTAATCAACAATGGTAACCTACCAAAT
88245 CACCATTTAATCAACA
1 CACCATTTAATCAACA
88261 GCTGTAACCA
Statistics
Matches: 158, Mismatches: 19, Indels: 18
0.81 0.10 0.09
Matches are distributed among these distances:
33 20 0.13
34 132 0.84
35 6 0.04
ACGTcount: A:0.41, C:0.26, G:0.08, T:0.25
Consensus pattern (33 bp):
CACCATTTAATCAACAATGGTAACCTACCAAAT
Found at i:88158 original size:68 final size:67
Alignment explanation
Indices: 88044--88260 Score: 283
Period size: 68 Copynumber: 3.2 Consensus size: 67
88034 GTAAAAACCA
* * *
88044 CCATTTAATCAACAATGGCAACCTACCAAATCTACCATTTAGTCAACAATGGTAAGCCACCAAAT
1 CCATTTAATCAACAATGGCAAACTACCAAAT-TACCATTTAATCAACAATGGTAAGCTACCAAAT
88109 CAC
65 CAC
* * * *
88112 CCATTTAATCAATAATGGTAAGCTACCAAATTTCTCATTTAATCAACAATGGTAAGCTACCAAAT
1 CCATTTAATCAACAATGGCAAACTACCAAATTAC-CATTTAATCAACAATGGTAAGCTACCAAAT
*
88177 CTC
65 CAC
* * * * *
88180 CCATTTAGTCAACAATGGCAAACCACCAAATCACCCATTTAATCAATAATGGTAAACTACCAAAT
1 CCATTTAATCAACAATGGCAAACTACCAAATTA-CCATTTAATCAACAATGGTAAGCTACCAAAT
88245 CA-
65 CAC
88247 CCATTTAATCAACA
1 CCATTTAATCAACA
88261 GCTGTAACCA
Statistics
Matches: 129, Mismatches: 18, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
67 15 0.12
68 113 0.88
69 1 0.01
ACGTcount: A:0.41, C:0.26, G:0.08, T:0.25
Consensus pattern (67 bp):
CCATTTAATCAACAATGGCAAACTACCAAATTACCATTTAATCAACAATGGTAAGCTACCAAATC
AC
Found at i:88186 original size:102 final size:101
Alignment explanation
Indices: 88042--88260 Score: 357
Period size: 102 Copynumber: 2.2 Consensus size: 101
88032 TGGTAAAAAC
* *
88042 CACCATTTAATCAACAATGGCAACCTACCAAATCTACCATTTAGTCAACAATGGTAAGCCACCAA
1 CACCATTTAATCAACAATGGCAACCTACCAAATCTACCATTTAGTCAACAATGGCAAACCACCAA
*
88107 ATCACCCATTTAATCAATAATGGTAAGCTACCAAAT
66 ATCACCCATTTAATCAATAATGGTAAACTACCAAAT
** * * *
88143 TTCTCATTTAATCAACAATGGTAAGCTACCAAATCTCCCATTTAGTCAACAATGGCAAACCACCA
1 CAC-CATTTAATCAACAATGGCAACCTACCAAATCTACCATTTAGTCAACAATGGCAAACCACCA
88208 AATCACCCATTTAATCAATAATGGTAAACTACCAAAT
65 AATCACCCATTTAATCAATAATGGTAAACTACCAAAT
88245 CACCATTTAATCAACA
1 CACCATTTAATCAACA
88261 GCTGTAACCA
Statistics
Matches: 107, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
101 14 0.13
102 93 0.87
ACGTcount: A:0.41, C:0.26, G:0.08, T:0.25
Consensus pattern (101 bp):
CACCATTTAATCAACAATGGCAACCTACCAAATCTACCATTTAGTCAACAATGGCAAACCACCAA
ATCACCCATTTAATCAATAATGGTAAACTACCAAAT
Found at i:90022 original size:24 final size:24
Alignment explanation
Indices: 89990--90037 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
89980 TGATGAATTT
*
89990 TTATTATTTTATTAATTTT-TAAAA
1 TTATAATTTTA-TAATTTTATAAAA
90014 TTATAATTTTATAATTTTATAAAA
1 TTATAATTTTATAATTTTATAAAA
90038 AATTAATATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 7 0.32
24 15 0.68
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (24 bp):
TTATAATTTTATAATTTTATAAAA
Found at i:90034 original size:8 final size:8
Alignment explanation
Indices: 89988--90035 Score: 53
Period size: 8 Copynumber: 6.0 Consensus size: 8
89978 ATTGATGAAT
*
89988 TTTTATTA
1 TTTTATAA
89996 TTTTATTAA
1 TTTTA-TAA
90005 TTTT-TAA
1 TTTTATAA
**
90012 AATTATAA
1 TTTTATAA
90020 TTTTATAA
1 TTTTATAA
90028 TTTTATAA
1 TTTTATAA
90036 AAAATTAATA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
7 5 0.15
8 22 0.67
9 6 0.18
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TTTTATAA
Found at i:90082 original size:19 final size:19
Alignment explanation
Indices: 90058--90129 Score: 69
Period size: 19 Copynumber: 3.7 Consensus size: 19
90048 ATACTTATTA
90058 ATAAAATTTATATTAATAT
1 ATAAAATTTATATTAATAT
*
90077 ATAAAATTTAT-TTTATA-
1 ATAAAATTTATATTAATAT
*
90094 ATTAAA-TTATATTAAATTAAT
1 ATAAAATTTATATT-AA-T-AT
90115 ATAAAATTTAGTATT
1 ATAAAATTTA-TATT
90130 TTTAAAAAGT
Statistics
Matches: 42, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
16 4 0.10
17 7 0.17
18 6 0.14
19 12 0.29
20 1 0.02
21 5 0.12
22 3 0.07
23 4 0.10
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (19 bp):
ATAAAATTTATATTAATAT
Found at i:90320 original size:22 final size:23
Alignment explanation
Indices: 90268--90320 Score: 54
Period size: 25 Copynumber: 2.2 Consensus size: 23
90258 TTATTATCAA
* *
90268 TTAAATTTATATTTATAATAAAT
1 TTAAATCTATATTAATAATAAAT
90291 TAGATAAATCT-TATTAATAATAAAT
1 T---TAAATCTATATTAATAATAAAT
90316 TTAAA
1 TTAAA
90321 ATTATAATTG
Statistics
Matches: 25, Mismatches: 2, Indels: 7
0.74 0.06 0.21
Matches are distributed among these distances:
22 4 0.16
23 1 0.04
25 14 0.56
26 6 0.24
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (23 bp):
TTAAATCTATATTAATAATAAAT
Found at i:90601 original size:21 final size:21
Alignment explanation
Indices: 90575--90617 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 21
90565 AAATAACATT
90575 TTATTTATAAAATATTT-TTAA
1 TTATTTATAAAA-ATTTATTAA
90596 TTATTTATAAAAATTTATTAA
1 TTATTTATAAAAATTTATTAA
90617 T
1 T
90618 CTATAAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 4 0.19
21 17 0.81
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (21 bp):
TTATTTATAAAAATTTATTAA
Found at i:90679 original size:15 final size:16
Alignment explanation
Indices: 90623--90707 Score: 57
Period size: 16 Copynumber: 5.1 Consensus size: 16
90613 TTAATCTATA
*
90623 AAAATAATTAAATATATT
1 AAAATAA-TAAA-ATTTT
*
90641 ATAATTAATAATATATTTT
1 A-AAATAATAA-A-ATTTT
* * *
90660 TAAATATTTAAA-TTT
1 AAAATAATAAAATTTT
90675 AAAATAATAAAATTTT
1 AAAATAATAAAATTTT
90691 AAAA-AGATAAAATTTT
1 AAAATA-ATAAAATTTT
90707 A
1 A
90708 GGATATTATA
Statistics
Matches: 54, Mismatches: 9, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
15 13 0.24
16 19 0.35
17 1 0.02
18 10 0.19
19 11 0.20
ACGTcount: A:0.56, C:0.00, G:0.01, T:0.42
Consensus pattern (16 bp):
AAAATAATAAAATTTT
Found at i:92493 original size:14 final size:15
Alignment explanation
Indices: 92474--92507 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
92464 GTGGAATGGG
92474 GTTTA-GAGTAATTA
1 GTTTAGGAGTAATTA
92488 GTTTAGGAGTAATTA
1 GTTTAGGAGTAATTA
92503 GTTTA
1 GTTTA
92508 AAGCCTAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.32, C:0.00, G:0.24, T:0.44
Consensus pattern (15 bp):
GTTTAGGAGTAATTA
Found at i:95837 original size:27 final size:27
Alignment explanation
Indices: 95803--95858 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
95793 CACCATATTT
**
95803 TCCTACTCAACCTCCATACCTGTCATA
1 TCCTACTCAACCTCCATACCCATCATA
95830 TCCTACTCAACCTCCATACCCATCATA
1 TCCTACTCAACCTCCATACCCATCATA
95857 TC
1 TC
95859 TTGGCACGAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.27, C:0.43, G:0.02, T:0.29
Consensus pattern (27 bp):
TCCTACTCAACCTCCATACCCATCATA
Found at i:96212 original size:75 final size:75
Alignment explanation
Indices: 96121--96461 Score: 517
Period size: 75 Copynumber: 4.6 Consensus size: 75
96111 GCGCACAAAA
* * *
96121 TTGTTGATTATAGTTATCGTGCAAATTATCTCGGATTAGTTGTTGATATTAGTAATGTGAAATAT
1 TTGTTGATTGTAGTTATCGTGCAGATTATCTCGGATTAGTTGTTGATAGTAGTAATGTGAAATAT
96186 GCAGAAATAT
66 GCAGAAATAT
* * * *
96196 TTGTTGATTGTAGTTATCGTGTAGATTATCTCAGATTAGTTTTTGATAGTAGTAATATGAAATAT
1 TTGTTGATTGTAGTTATCGTGCAGATTATCTCGGATTAGTTGTTGATAGTAGTAATGTGAAATAT
96261 GCA-AAA-AT
66 GCAGAAATAT
96269 TTGTTGATTGTAGTTATCGTGCAGATTATCTCGGATTAGTTGTTGATAGTAGTAATGTGAAATAT
1 TTGTTGATTGTAGTTATCGTGCAGATTATCTCGGATTAGTTGTTGATAGTAGTAATGTGAAATAT
**
96334 GTGGAAATAT
66 GCAGAAATAT
96344 TTGTTGATTGTAGTTATCGTGCAGATTATCTCGGATTAGTTGTTGATAGTAGTAATGTGAAATAT
1 TTGTTGATTGTAGTTATCGTGCAGATTATCTCGGATTAGTTGTTGATAGTAGTAATGTGAAATAT
* * *
96409 ACAAAAATAG
66 GCAGAAATAT
* ** *
96419 TTGTTGATTGTATTTATTATGCAGATTATCTCGAATTA-TTGTT
1 TTGTTGATTGTAGTTATCGTGCAGATTATCTCGGATTAGTTGTT
96462 TCATCTTGCT
Statistics
Matches: 242, Mismatches: 22, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
73 64 0.26
74 11 0.05
75 167 0.69
ACGTcount: A:0.30, C:0.06, G:0.21, T:0.43
Consensus pattern (75 bp):
TTGTTGATTGTAGTTATCGTGCAGATTATCTCGGATTAGTTGTTGATAGTAGTAATGTGAAATAT
GCAGAAATAT
Found at i:96390 original size:148 final size:148
Alignment explanation
Indices: 96117--96461 Score: 532
Period size: 148 Copynumber: 2.3 Consensus size: 148
96107 TGTGGCGCAC
* * *
96117 AAAA-TTGTTGATTATAGTTATCGTGCAAATTATCTCGGATTAGTTGTTGATATTAGTAATGTGA
1 AAAATTTGTTGATTGTAGTTATCGTGCAGATTATCTCGGATTAGTTGTTGATAGTAGTAATGTGA
* *
96181 AATATGCAGAAATATTTGTTGATTGTAGTTATCGTGTAGATTATCTCAGATTAGTTTTTGATAGT
66 AATATGCAGAAATATTTGTTGATTGTAGTTATCGTGCAGATTATCTCAGATTAGTTGTTGATAGT
*
96246 AGTAATATGAAATATGCA
131 AGTAATATGAAATATACA
96264 AAAATTTGTTGATTGTAGTTATCGTGCAGATTATCTCGGATTAGTTGTTGATAGTAGTAATGTGA
1 AAAATTTGTTGATTGTAGTTATCGTGCAGATTATCTCGGATTAGTTGTTGATAGTAGTAATGTGA
** *
96329 AATATGTGGAAATATTTGTTGATTGTAGTTATCGTGCAGATTATCTCGGATTAGTTGTTGATAGT
66 AATATGCAGAAATATTTGTTGATTGTAGTTATCGTGCAGATTATCTCAGATTAGTTGTTGATAGT
*
96394 AGTAATGTGAAATATACA
131 AGTAATATGAAATATACA
* ** *
96412 AAAATAGTTGTTGATTGTATTTATTATGCAGATTATCTCGAATTA-TTGTT
1 AAAAT--TTGTTGATTGTAGTTATCGTGCAGATTATCTCGGATTAGTTGTT
96462 TCATCTTGCT
Statistics
Matches: 181, Mismatches: 14, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
147 4 0.02
148 138 0.76
149 5 0.03
150 34 0.19
ACGTcount: A:0.31, C:0.06, G:0.21, T:0.42
Consensus pattern (148 bp):
AAAATTTGTTGATTGTAGTTATCGTGCAGATTATCTCGGATTAGTTGTTGATAGTAGTAATGTGA
AATATGCAGAAATATTTGTTGATTGTAGTTATCGTGCAGATTATCTCAGATTAGTTGTTGATAGT
AGTAATATGAAATATACA
Found at i:98834 original size:13 final size:13
Alignment explanation
Indices: 98816--98842 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
98806 ACATTATGCT
98816 TTGTATCGATACA
1 TTGTATCGATACA
98829 TTGTATCGATACA
1 TTGTATCGATACA
98842 T
1 T
98843 GTACAACTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:100512 original size:15 final size:15
Alignment explanation
Indices: 100492--100522 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
100482 AACCATCAAA
100492 GATGATGAAGATAAT
1 GATGATGAAGATAAT
*
100507 GATGATGATGATAAT
1 GATGATGAAGATAAT
100522 G
1 G
100523 TTGAAGTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.42, C:0.00, G:0.29, T:0.29
Consensus pattern (15 bp):
GATGATGAAGATAAT
Found at i:107600 original size:19 final size:20
Alignment explanation
Indices: 107576--107621 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
107566 CAATATTTCA
*
107576 ATACATGTTC-ATTGTATCG
1 ATACATGTACAATTGTATCG
107595 ATACATGTACAATTGTATCG
1 ATACATGTACAATTGTATCG
107615 ATACATG
1 ATACATG
107622 AAATTGGTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
19 9 0.36
20 16 0.64
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (20 bp):
ATACATGTACAATTGTATCG
Found at i:119845 original size:17 final size:16
Alignment explanation
Indices: 119812--119842 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
119802 GTTATAGGCT
*
119812 ATTTTTGAAAATTTTC
1 ATTTTAGAAAATTTTC
119828 ATTTTAGAAAATTTT
1 ATTTTAGAAAATTTT
119843 TCAATTTGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.03, G:0.06, T:0.55
Consensus pattern (16 bp):
ATTTTAGAAAATTTTC
Found at i:127302 original size:22 final size:22
Alignment explanation
Indices: 127275--127319 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
127265 TTTCTTTTTC
*
127275 TCTCCCCCTTAATCAAAGAATT
1 TCTCCCCCTTAATCAAACAATT
*
127297 TCTCCCCCTTAATGAAACAATT
1 TCTCCCCCTTAATCAAACAATT
127319 T
1 T
127320 TAATCACATG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.31, C:0.31, G:0.04, T:0.33
Consensus pattern (22 bp):
TCTCCCCCTTAATCAAACAATT
Found at i:128718 original size:21 final size:21
Alignment explanation
Indices: 128687--128731 Score: 56
Period size: 20 Copynumber: 2.1 Consensus size: 21
128677 GCTGCTAGTG
*
128687 TGGGGGCTGCCCGGTTGCGACC
1 TGGGGGCTG-CCGGTCGCGACC
*
128709 TGGGGG-TGCCGGTCGTGACC
1 TGGGGGCTGCCGGTCGCGACC
128729 TGG
1 TGG
128732 TGAGTGCTGC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 13 0.62
21 2 0.10
22 6 0.29
ACGTcount: A:0.04, C:0.27, G:0.49, T:0.20
Consensus pattern (21 bp):
TGGGGGCTGCCGGTCGCGACC
Found at i:129181 original size:13 final size:13
Alignment explanation
Indices: 129163--129200 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
129153 ATAATCCCTT
*
129163 TGTATCGATACAC
1 TGTATCGATACAA
129176 TGTATCGATACAA
1 TGTATCGATACAA
*
129189 TGTATTGATACA
1 TGTATCGATACA
129201 GAGAATGCTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:135429 original size:13 final size:13
Alignment explanation
Indices: 135413--135437 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
135403 ACATTTGGTC
135413 ATGTATCGATACA
1 ATGTATCGATACA
135426 ATGTATCGATAC
1 ATGTATCGATAC
135438 TGTGCATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:135470 original size:20 final size:19
Alignment explanation
Indices: 135447--135485 Score: 69
Period size: 20 Copynumber: 2.0 Consensus size: 19
135437 CTGTGCATTA
135447 TGTATCGATACATTTGAAGG
1 TGTATCGATACATTT-AAGG
135467 TGTATCGATACATTTAAGG
1 TGTATCGATACATTTAAGG
135486 GTTTTGACCT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.31, C:0.10, G:0.23, T:0.36
Consensus pattern (19 bp):
TGTATCGATACATTTAAGG
Found at i:137091 original size:13 final size:13
Alignment explanation
Indices: 137073--137098 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
137063 ACAAAGATCC
137073 ATGTATCGATACA
1 ATGTATCGATACA
137086 ATGTATCGATACA
1 ATGTATCGATACA
137099 TTTTGTAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:138364 original size:20 final size:20
Alignment explanation
Indices: 138326--138364 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
138316 CTATAACTCT
138326 AACTTGAAAAATTATTTTTG
1 AACTTGAAAAATTATTTTTG
*
138346 AACTCTGAACAATTATTTT
1 AACT-TGAAAAATTATTTT
138365 AAAATTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.38, C:0.10, G:0.08, T:0.44
Consensus pattern (20 bp):
AACTTGAAAAATTATTTTTG
Found at i:144765 original size:19 final size:19
Alignment explanation
Indices: 144741--144805 Score: 79
Period size: 19 Copynumber: 3.7 Consensus size: 19
144731 AGCGACACAT
144741 TGTATCGATACAAAACTTA
1 TGTATCGATACAAAACTTA
144760 TGTATCGATAC---A--T-
1 TGTATCGATACAAAACTTA
*
144773 TGTATCGATACAACACTTA
1 TGTATCGATACAAAACTTA
144792 TGTATCGATACAAA
1 TGTATCGATACAAA
144806 TTGTTGAAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 12
0.75 0.02 0.23
Matches are distributed among these distances:
13 11 0.28
14 1 0.03
16 2 0.05
18 1 0.03
19 24 0.62
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.32
Consensus pattern (19 bp):
TGTATCGATACAAAACTTA
Found at i:144778 original size:13 final size:13
Alignment explanation
Indices: 144760--144784 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
144750 ACAAAACTTA
144760 TGTATCGATACAT
1 TGTATCGATACAT
144773 TGTATCGATACA
1 TGTATCGATACA
144785 ACACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:144778 original size:32 final size:32
Alignment explanation
Indices: 144728--144803 Score: 125
Period size: 32 Copynumber: 2.4 Consensus size: 32
144718 GCAGTAGCTT
* *
144728 TGTAGCGACACATTGTATCGATACAAAACTTA
1 TGTATCGATACATTGTATCGATACAAAACTTA
*
144760 TGTATCGATACATTGTATCGATACAACACTTA
1 TGTATCGATACATTGTATCGATACAAAACTTA
144792 TGTATCGATACA
1 TGTATCGATACA
144804 AATTGTTGAA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 41 1.00
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.32
Consensus pattern (32 bp):
TGTATCGATACATTGTATCGATACAAAACTTA
Found at i:145695 original size:39 final size:39
Alignment explanation
Indices: 145641--145717 Score: 102
Period size: 39 Copynumber: 2.0 Consensus size: 39
145631 GTGATAAAGA
*
145641 TGCCAATATGCTGATTCACGGCCAACGATC-TTGGACTTG
1 TGCCAATATGCTGATTCAAGGCCAACGA-CATTGGACTTG
* * *
145680 TGCCAATGTGTTGATTCAAGGCCAATGACATTGGACTT
1 TGCCAATATGCTGATTCAAGGCCAACGACATTGGACTT
145718 AAAGACAAGG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
38 1 0.03
39 32 0.97
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (39 bp):
TGCCAATATGCTGATTCAAGGCCAACGACATTGGACTTG
Found at i:145889 original size:22 final size:22
Alignment explanation
Indices: 145821--145889 Score: 54
Period size: 22 Copynumber: 3.2 Consensus size: 22
145811 GCCAGTGCCA
*
145821 ATATGCTGATTCAAGGCCAACG
1 ATATGCTGATTCAAGGCCAGCG
* * * *
145843 ATAT-CAGACTTAAAGG--TGTCA
1 ATATGCTGA-TTCAAGGCCAG-CG
145864 ATATGCTGATTCAAGGCCAGCG
1 ATATGCTGATTCAAGGCCAGCG
145886 ATAT
1 ATAT
145890 TGGGTTTTAA
Statistics
Matches: 33, Mismatches: 9, Indels: 10
0.63 0.17 0.19
Matches are distributed among these distances:
21 14 0.42
22 18 0.55
23 1 0.03
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26
Consensus pattern (22 bp):
ATATGCTGATTCAAGGCCAGCG
Found at i:145946 original size:93 final size:89
Alignment explanation
Indices: 145633--145948 Score: 334
Period size: 87 Copynumber: 3.5 Consensus size: 89
145623 TAAGAAAAGT
* * * *
145633 GATAAAGATGCCAATATGCTGATTCACGGCCAACGATCTTGGACTT-GTGCCAATGTGTTGATTC
1 GATAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAGTGCCAATGTGCTGATTC
** *
145697 AAGGCCAATGACATTGGACTTAAA
66 AAGGCCAGCGACATTGGTCTTAAA
* * * * * *
145721 GA-CAAGGTGCCAATACGCCGATTCAAAGCCAGCGATATTGGGCTTA-TGCCAATGTGCTGATTC
1 GATAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAGTGCCAATGTGCTGATTC
*
145784 AAGGCCAGCAACATTGGTCTTAAA
66 AAGGCCAGCGACATTGGTCTTAAA
** ** * *
145808 GATGCCA-GTGCCAATATGCTGATTCAAGGCCAACGATATCAGACTTAAAGGTGTCAATATGCTG
1 GAT-AAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTT--A-GTGCCAATGTGCTG
* *
145872 ATTCAAGGCCAGCGATATTGGGTTTTAAA
62 ATTCAAGGCCAGCGACATT-GGTCTTAAA
* * *
145901 GATAAAGGTGCCAATTTGCTGGTTCAAGGCCAGCGATATTGGACTTAG
1 GATAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAG
145949 AAGAAGACGC
Statistics
Matches: 185, Mismatches: 34, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
87 72 0.39
88 34 0.18
89 2 0.01
90 2 0.01
91 1 0.01
92 29 0.16
93 45 0.24
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (89 bp):
GATAAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAGTGCCAATGTGCTGATTC
AAGGCCAGCGACATTGGTCTTAAA
Found at i:146027 original size:28 final size:30
Alignment explanation
Indices: 145957--146063 Score: 96
Period size: 29 Copynumber: 3.6 Consensus size: 30
145947 AGAAGAAGAC
* * *
145957 GCCACCAACTTGTGTAGGCTTTTAAAAGGGTT
1 GCCACCGACTTGTG--GGCTTTTGAAAGGGGT
* * * *
145989 G-CATCAACTTGTGTGCTTTTG-AA-GGTT
1 GCCACCGACTTGTGGGCTTTTGAAAGGGGT
*
146016 GCCACTGACTTGTGGGC-TTTGAAAGGGGT
1 GCCACCGACTTGTGGGCTTTTGAAAGGGGT
146045 GCCACCGACTTGTGGGCTT
1 GCCACCGACTTGTGGGCTT
146064 AAAAAGGTGC
Statistics
Matches: 62, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
27 9 0.15
28 15 0.24
29 25 0.40
30 1 0.02
31 11 0.18
32 1 0.02
ACGTcount: A:0.19, C:0.20, G:0.30, T:0.32
Consensus pattern (30 bp):
GCCACCGACTTGTGGGCTTTTGAAAGGGGT
Found at i:146069 original size:29 final size:27
Alignment explanation
Indices: 146010--146094 Score: 89
Period size: 27 Copynumber: 3.0 Consensus size: 27
146000 TGTGCTTTTG
*
146010 AAGGTTGCCACTGACTTGTGGGCTTTGAAA
1 AAGG-TGCCACCGACTTGTGGGC-TT-AAA
**
146040 GGGGTGCCACCGACTTGTGGGCTTAAA
1 AAGGTGCCACCGACTTGTGGGCTTAAA
* * *
146067 AAGGTGCCACGGAGTTGTGGACTTAAA
1 AAGGTGCCACCGACTTGTGGGCTTAAA
146094 A
1 A
146095 GGAAAAAGAG
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
27 26 0.55
28 2 0.04
29 17 0.36
30 2 0.04
ACGTcount: A:0.25, C:0.18, G:0.33, T:0.25
Consensus pattern (27 bp):
AAGGTGCCACCGACTTGTGGGCTTAAA
Found at i:146113 original size:34 final size:34
Alignment explanation
Indices: 146064--146194 Score: 156
Period size: 34 Copynumber: 3.8 Consensus size: 34
146054 TTGTGGGCTT
*
146064 AAAAAG-GTGCCACGGAGTTGTGGACTTAAAAGG
1 AAAAAGAGTGCCACAGAGTTGTGGACTTAAAAGG
* * * *
146097 AAAAAGAGTGTCACGGAGTTGTGGGCTTAAAAAG
1 AAAAAGAGTGCCACAGAGTTGTGGACTTAAAAGG
* * *
146131 AAAAAGAGTGCCACAAAGTTGTGGGCTTTAAAAAGA
1 AAAAAGAGTGCCACAGAGTTGTGGAC-TT-AAAAGG
*
146167 AAAAAAAGTGCCACAGAGTTGTGGACTT
1 AAAAAGAGTGCCACAGAGTTGTGGACTT
146195 TTGAAGGTTG
Statistics
Matches: 84, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
33 6 0.07
34 47 0.56
35 4 0.05
36 27 0.32
ACGTcount: A:0.40, C:0.11, G:0.29, T:0.20
Consensus pattern (34 bp):
AAAAAGAGTGCCACAGAGTTGTGGACTTAAAAGG
Found at i:146270 original size:30 final size:30
Alignment explanation
Indices: 146198--146282 Score: 120
Period size: 29 Copynumber: 2.9 Consensus size: 30
146188 TGGACTTTTG
*
146198 AAGGTTGCCACTCG-CTTGTGGGCTTTGGAA
1 AAGGATGCCACT-GACTTGTGGGCTTTGGAA
*
146228 AA-GATTCCACTGACTTGTGGGCTTTGGAA
1 AAGGATGCCACTGACTTGTGGGCTTTGGAA
*
146257 AAGGGTGCCACTGACTTGTGGGCTTT
1 AAGGATGCCACTGACTTGTGGGCTTT
146283 TGACAGGGTG
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
28 1 0.02
29 25 0.51
30 23 0.47
ACGTcount: A:0.19, C:0.19, G:0.32, T:0.31
Consensus pattern (30 bp):
AAGGATGCCACTGACTTGTGGGCTTTGGAA
Found at i:147718 original size:1 final size:1
Alignment explanation
Indices: 147714--147802 Score: 52
Period size: 1 Copynumber: 89.0 Consensus size: 1
147704 CTTTTTGTTG
* * * * ** * * * * *
147714 TTTTTTTTTCTTTTGTTTGTCTTTTTTTTTGGTTTTTTTTGTTTTTTTTGTTCTTTTTTGTTTGT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * *
147779 TTGTTGTTTTTTTTCTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTT
147803 GCGGATGACG
Statistics
Matches: 62, Mismatches: 26, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
1 62 1.00
ACGTcount: A:0.00, C:0.04, G:0.11, T:0.84
Consensus pattern (1 bp):
T
Found at i:147749 original size:11 final size:10
Alignment explanation
Indices: 147705--147803 Score: 94
Period size: 10 Copynumber: 9.9 Consensus size: 10
147695 ATCCAGACCC
*
147705 TTTTTGTTGT
1 TTTTTTTTGT
*
147715 TTTTTTTTCT
1 TTTTTTTTGT
* *
147725 TTTGTTTGTCT
1 TTT-TTTTTGT
*
147736 TTTTTTTTGG
1 TTTTTTTTGT
147746 TTTTTTTTG-
1 TTTTTTTTGT
147755 TTTTTTTTGT
1 TTTTTTTTGT
*
147765 TCTTTTTTGT
1 TTTTTTTTGT
*
147775 TTGTTTGTTG-
1 TT-TTTTTTGT
*
147785 TTTTTTTTCT
1 TTTTTTTTGT
147795 TTTTTTTTG
1 TTTTTTTTG
147804 CGGATGACGC
Statistics
Matches: 73, Mismatches: 12, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
9 14 0.19
10 44 0.60
11 15 0.21
ACGTcount: A:0.00, C:0.04, G:0.13, T:0.83
Consensus pattern (10 bp):
TTTTTTTTGT
Found at i:147750 original size:31 final size:32
Alignment explanation
Indices: 147705--147777 Score: 94
Period size: 31 Copynumber: 2.3 Consensus size: 32
147695 ATCCAGACCC
* *
147705 TTTTTGTTGTTTTTTTTTCTTTTGTTTG-TCT
1 TTTTTTTTGGTTTTTTTTCTTTTGTTTGTTCT
* *
147736 TTTTTTTTGGTTTTTTTTGTTTTTTTTGTTCT
1 TTTTTTTTGGTTTTTTTTCTTTTGTTTGTTCT
147768 TTTTTGTTTG
1 TTTTT-TTTG
147778 TTTGTTGTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
31 24 0.67
32 8 0.22
33 4 0.11
ACGTcount: A:0.00, C:0.04, G:0.14, T:0.82
Consensus pattern (32 bp):
TTTTTTTTGGTTTTTTTTCTTTTGTTTGTTCT
Found at i:147790 original size:49 final size:50
Alignment explanation
Indices: 147705--147803 Score: 130
Period size: 49 Copynumber: 2.0 Consensus size: 50
147695 ATCCAGACCC
* * *
147705 TTTTTGTTGTTTTTTTTTCTTTTGTTTGTCTTTTTTTTTGGTTTTTTTTG
1 TTTTTGTTGTTCTTTTTTCGTTTGTTTGTCTTTTTTTTTCGTTTTTTTTG
* *
147755 TTTTTTTTGTTCTTTTTT-GTTTGTTTGT-TGTTTTTTTTCTTTTTTTTTG
1 TTTTTGTTGTTCTTTTTTCGTTTGTTTGTCT-TTTTTTTTCGTTTTTTTTG
147804 CGGATGACGC
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
48 1 0.02
49 26 0.60
50 16 0.37
ACGTcount: A:0.00, C:0.04, G:0.13, T:0.83
Consensus pattern (50 bp):
TTTTTGTTGTTCTTTTTTCGTTTGTTTGTCTTTTTTTTTCGTTTTTTTTG
Found at i:147791 original size:32 final size:30
Alignment explanation
Indices: 147705--147792 Score: 99
Period size: 32 Copynumber: 2.8 Consensus size: 30
147695 ATCCAGACCC
147705 TTTTTG-TTGTTTTTTTTTCTTTTGTTTGTCT
1 TTTTTGTTTGTTTTTTTTT-TTTT-TTTGTCT
147736 TTTTT-TTTGGTTTTTTTTGTTTTTTTTGTTCT
1 TTTTTGTTT-GTTTTTTTT-TTTTTTTTG-TCT
* *
147768 TTTTTGTTTGTTTGTTGTTTTTTTT
1 TTTTTGTTTGTTTTTTTTTTTTTTT
147793 CTTTTTTTTT
Statistics
Matches: 50, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
31 18 0.36
32 28 0.56
33 4 0.08
ACGTcount: A:0.00, C:0.03, G:0.14, T:0.83
Consensus pattern (30 bp):
TTTTTGTTTGTTTTTTTTTTTTTTTTGTCT
Found at i:147794 original size:27 final size:26
Alignment explanation
Indices: 147705--147803 Score: 89
Period size: 27 Copynumber: 3.7 Consensus size: 26
147695 ATCCAGACCC
* *
147705 TTTTTGTTGTTTTTTTTTCTTTTGTTT
1 TTTTTGTTCTTTTTTTTT-GTTTGTTT
*
147732 GTCTTTT-TT-TTTGGTTTTT-TTTGTTT
1 -T-TTTTGTTCTTT-TTTTTTGTTTGTTT
147758 TTTTTGTTCTTTTTTGTTTGTTTGTTGT
1 TTTTTGTTCTTTTTT-TTTGTTTGTT-T
147786 TTTTT-TTCTTTTTTTTTG
1 TTTTTGTTCTTTTTTTTTG
147804 CGGATGACGC
Statistics
Matches: 62, Mismatches: 2, Indels: 16
0.77 0.03 0.20
Matches are distributed among these distances:
24 4 0.06
25 5 0.08
26 17 0.27
27 18 0.29
28 14 0.23
29 4 0.06
ACGTcount: A:0.00, C:0.04, G:0.13, T:0.83
Consensus pattern (26 bp):
TTTTTGTTCTTTTTTTTTGTTTGTTT
Found at i:164751 original size:52 final size:52
Alignment explanation
Indices: 164676--164822 Score: 244
Period size: 52 Copynumber: 2.8 Consensus size: 52
164666 AATATGAAAT
*
164676 TTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGCAAA
1 TTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAA
164728 TTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAA
1 TTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAA
*
164780 TTTGCCTGCATGTATCGATACA--AAGATCAGTGTATCGATACAT
1 TTTGCCTGCATGTATCGATACATTTA-AT-AGTGTATCGATACAT
164823 TTTCTTGGCA
Statistics
Matches: 91, Mismatches: 2, Indels: 4
0.94 0.02 0.04
Matches are distributed among these distances:
50 1 0.01
51 2 0.02
52 88 0.97
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34
Consensus pattern (52 bp):
TTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAA
Found at i:164862 original size:13 final size:13
Alignment explanation
Indices: 164844--164868 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
164834 TAGCTGATTA
164844 TGTATCGATACAT
1 TGTATCGATACAT
164857 TGTATCGATACA
1 TGTATCGATACA
164869 ACACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:166985 original size:18 final size:18
Alignment explanation
Indices: 166962--166999 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
166952 TAAGACCTGA
*
166962 AAACAATCTAAAATGATG
1 AAACAATCTAAAATAATG
166980 AAACAATCTAAAATAATG
1 AAACAATCTAAAATAATG
166998 AA
1 AA
167000 CCTGTTAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.61, C:0.11, G:0.08, T:0.21
Consensus pattern (18 bp):
AAACAATCTAAAATAATG
Found at i:169676 original size:64 final size:64
Alignment explanation
Indices: 169608--169759 Score: 175
Period size: 64 Copynumber: 2.4 Consensus size: 64
169598 ATTAAGGGTA
* *
169608 ACCAAGATGAAAACTTAAGTTAAAA-GGTTGACCAAGGCAAAACCAAAATAGTCAACTAAAGATG
1 ACCAAGATGAAAACTTAAGTAAAAAGGGTTAACCAAGGCAAAACCAAAAT-GTCAACTAAAGATG
* * * ** * *
169672 ACCAAGATG-AAACCTAAGTCGAAAAGGGTTAACCAGGGTGAAACCAAAATGTCAACTAAGGGTG
1 ACCAAGATGAAAACTTAAGT-AAAAAGGGTTAACCAAGGCAAAACCAAAATGTCAACTAAAGATG
*
169736 ACCAAGGT-AAAACTTAAGTAAAAA
1 ACCAAGATGAAAACTTAAGTAAAAA
169760 AAGAGTTGGT
Statistics
Matches: 74, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
63 13 0.18
64 41 0.55
65 20 0.27
ACGTcount: A:0.48, C:0.16, G:0.20, T:0.16
Consensus pattern (64 bp):
ACCAAGATGAAAACTTAAGTAAAAAGGGTTAACCAAGGCAAAACCAAAATGTCAACTAAAGATG
Found at i:170018 original size:66 final size:67
Alignment explanation
Indices: 169741--170418 Score: 257
Period size: 66 Copynumber: 10.3 Consensus size: 67
169731 GGGTGACCAA
* * * * * * * *
169741 GGTAAAACTTAAGTAAAAAAAGAGTTGGTC--GGAATAAAACTATACAAACTAAAAAAGGATGAT
1 GGTAAAACCTAAGTCAAAAAAGAGTTAGCCAAGG-ATGAAACCATACAAACCAAAAAAGGATGAC
*
169804 TGG
65 TAG
* * * * *
169807 GGCAAAACCTAAGTC-GAAAAGAAGTTAGCCAA-GATGAAACCATACCAACCAACAAA-GAGTAA
1 GGTAAAACCTAAGTCAAAAAAG-AGTTAGCCAAGGATGAAACCATACAAACCAAAAAAGGA-TGA
*
169869 CCAG
64 CTAG
** * * * * * * *
169873 GGTGGAACCTAAGTC-GAAAAGAAGTT-GGCAA-GACT-ATACTATATGAAA-CAATAAAGGGTG
1 GGTAAAACCTAAGTCAAAAAAG-AGTTAGCCAAGGA-TGAAACCATA-CAAACCAAAAAAGGATG
*
169933 ATTA-
63 ACTAG
* *
169937 GGT-AGACCTAAGTCAAAAAAGAGTTAGCCGA-GATGAAACCATACAAACCAAAAAAGGATGACT
1 GGTAAAACCTAAGTCAAAAAAGAGTTAGCCAAGGATGAAACCATACAAACCAAAAAAGGATGACT
170000 AG
66 AG
* * * * * * * * *
170002 GGTAAAACCTAAGTCAATAAGGAATTA-ACTAGGATGAAACCATACGAACCAACAAAGGGTGACC
1 GGTAAAACCTAAGTCAAAAAAGAGTTAGCCAAGGATGAAACCATACAAACCAAAAAAGGATGACT
*
170066 AA
66 AG
* * ** * * *
170068 GG-AAGAGCTTAAGT-TGAAAAGAAGTT-GGCAAGGATGAAATCATACAAACCAATAAA-GAGTG
1 GGTAA-AACCTAAGTCAAAAAAG-AGTTAGCCAAGGATGAAACCATACAAACCAAAAAAGGA-TG
170129 ACTA-
63 ACTAG
* * * ** ** *
170133 -GAAAGGAACCTAAGTTAAAAAGGAGTTAG-TTAGGATGAAACCATATGAACTAATAAAAAGG-T
1 GGTAA--AACCTAAGTCAAAAAAGAGTTAGCCAAGGATGAAACCATACAAAC-CA-AAAAAGGAT
170195 GACTA-
62 GACTAG
* *** * *
170200 GGTAAAAACTAAAGTCAAAAAAGAGTTAGCC-AGGATGAAACCATA-TGGCACAATAAAGCATGA
1 GGTAAAACCT-AAGTCAAAAAAGAGTTAGCCAAGGATGAAACCATACAAAC-CAAAAAAGGATGA
* *
170263 CCAA
64 CTAG
* * * * * * ** *
170267 GGTAAAACGTAAGTCGAAAAATAGTT-GACTAGGATGAAACCAAATGAACCAACAAATGG-TGAC
1 GGTAAAACCTAAGTCAAAAAAGAGTTAGCCAAGGATGAAACCATACAAACCAA-AAAAGGATGAC
170330 TAG
65 TAG
* * * * * *** *
170333 GG-CAAACCTAAGTAAAAAAAGAGTTGGTC-GGGAT-AAACCATGTGAACCAACAAAGGGA-GAC
1 GGTAAAACCTAAGTCAAAAAAGAGTTAGCCAAGGATGAAACCATACAAACCAA-AAAAGGATGAC
*
170394 CAG
65 TAG
* *
170397 GGTAGAACCTAAGTTAAAAAAG
1 GGTAAAACCTAAGTCAAAAAAG
170419 TGTTGGCTGG
Statistics
Matches: 459, Mismatches: 117, Indels: 73
0.71 0.18 0.11
Matches are distributed among these distances:
63 17 0.04
64 60 0.13
65 86 0.19
66 233 0.51
67 55 0.12
68 7 0.02
69 1 0.00
ACGTcount: A:0.47, C:0.14, G:0.22, T:0.17
Consensus pattern (67 bp):
GGTAAAACCTAAGTCAAAAAAGAGTTAGCCAAGGATGAAACCATACAAACCAAAAAAGGATGACT
AG
Done.