Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold389
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 982648
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
File 6 of 7
Found at i:731293 original size:13 final size:13
Alignment explanation
Indices: 731275--731313 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
731265 ATAATCACCC
*
731275 TGTATCGATACAG
1 TGTATCGATACAA
731288 TGTATCGATACAA
1 TGTATCGATACAA
731301 TGTATCGATACAA
1 TGTATCGATACAA
731314 CAAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:731324 original size:20 final size:20
Alignment explanation
Indices: 731299--731377 Score: 70
Period size: 20 Copynumber: 3.7 Consensus size: 20
731289 GTATCGATAC
731299 AATGTATCGATACAACAAAA
1 AATGTATCGATACAACAAAA
* *
731319 AATGTATCGATACATAGAATTTCCA
1 AATGTATCGATACA-ACAA----AA
*
731344 GATGTATCGATAC-ACAAAA
1 AATGTATCGATACAACAAAA
731363 ACATGTATCGATACA
1 A-ATGTATCGATACA
731378 TTTTGGACAT
Statistics
Matches: 46, Mismatches: 6, Indels: 13
0.71 0.09 0.20
Matches are distributed among these distances:
19 1 0.02
20 26 0.57
21 3 0.07
23 3 0.07
25 13 0.28
ACGTcount: A:0.46, C:0.16, G:0.13, T:0.25
Consensus pattern (20 bp):
AATGTATCGATACAACAAAA
Found at i:733421 original size:15 final size:15
Alignment explanation
Indices: 733385--733422 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
733375 TACATCAATT
* *
733385 TCATTTGGAGCTTCT
1 TCATTTTGAGCTTCC
733400 TCATTTTGAGCTTCC
1 TCATTTTGAGCTTCC
733415 TCATTTTG
1 TCATTTTG
733423 GACATTTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.13, C:0.21, G:0.16, T:0.50
Consensus pattern (15 bp):
TCATTTTGAGCTTCC
Found at i:737505 original size:13 final size:13
Alignment explanation
Indices: 737487--737512 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
737477 CAATTTTTTG
737487 TGTATCGATACAT
1 TGTATCGATACAT
737500 TGTATCGATACAT
1 TGTATCGATACAT
737513 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:737598 original size:20 final size:20
Alignment explanation
Indices: 737573--737645 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
737563 ATCTTTTTTT
737573 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
737593 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
737614 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
737634 ATGTATCGATAC
1 ATGTATCGATAC
737646 TTTGAGTTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:737624 original size:41 final size:42
Alignment explanation
Indices: 737551--737645 Score: 174
Period size: 41 Copynumber: 2.3 Consensus size: 42
737541 CTGCCAAGAA
*
737551 ATGTATCGATACATCTTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTTCATGTATCGATACATTGCAAC
737593 ATGTATCGATACATC-TTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTTCATGTATCGATACATTGCAAC
737634 ATGTATCGATAC
1 ATGTATCGATAC
737646 TTTGAGTTGT
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
41 37 0.71
42 15 0.29
ACGTcount: A:0.29, C:0.18, G:0.13, T:0.40
Consensus pattern (42 bp):
ATGTATCGATACATCTTTTTTCATGTATCGATACATTGCAAC
Found at i:741116 original size:19 final size:19
Alignment explanation
Indices: 741072--741127 Score: 85
Period size: 19 Copynumber: 2.9 Consensus size: 19
741062 CTGCCAGTTT
**
741072 CATGTATCGATACAATTGTG
1 CATGTATCGATACAA-TGAA
741092 CATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
741111 CATGTATCGATACAATG
1 CATGTATCGATACAATG
741128 TATCGATACA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
19 19 0.56
20 15 0.44
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.30
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:741130 original size:13 final size:13
Alignment explanation
Indices: 741112--741138 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
741102 TACAATGAAC
741112 ATGTATCGATACA
1 ATGTATCGATACA
741125 ATGTATCGATACA
1 ATGTATCGATACA
741138 A
1 A
741139 AGCATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:746988 original size:30 final size:29
Alignment explanation
Indices: 746926--746993 Score: 91
Period size: 29 Copynumber: 2.3 Consensus size: 29
746916 TCTTTTTCCA
*
746926 AAAGTCCACGACTTAGTGGCACCCTTCTT
1 AAAGTCCACGACTTAGTGGCACACTTCTT
* * *
746955 AAAGTCCATGACTTAGTGGCATATTTGCTT
1 AAAGTCCACGACTTAGTGGCACACTT-CTT
746985 AAAGTCCAC
1 AAAGTCCAC
746994 AACTCTGTGC
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
29 22 0.67
30 11 0.33
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (29 bp):
AAAGTCCACGACTTAGTGGCACACTTCTT
Found at i:747065 original size:32 final size:32
Alignment explanation
Indices: 746985--747184 Score: 126
Period size: 33 Copynumber: 6.4 Consensus size: 32
746975 ATATTTGCTT
* * **
746985 AAAGTCCACAACTCTGTGCCACCCCTTT-TT-
1 AAAGTCCACAACTCCGTGACACCTTTTTCTTC
* * * * **
747015 AAAGACCATAATTACGTGACAATTTTTTCTTC
1 AAAGTCCACAACTCCGTGACACCTTTTTCTTC
*
747047 AAAGTCCACAACTCCGTGACACC--CTT-TT-
1 AAAGTCCACAACTCCGTGACACCTTTTTCTTC
* * * *
747075 -AAGTCCACAAATCCATGGCACCTTTTTCTTTT
1 AAAGTCCACAACTCCGTGACACCTTTTTC-TTC
* * *
747107 AAAGTCCACAACTCCATGGCACCTTTTTCGTC
1 AAAGTCCACAACTCCGTGACACCTTTTTCTTC
* ** * *
747139 AAAGTCCACAACTTCGTGGTACCTTTTTTTTTT
1 AAAGTCCACAACTCCGTGACACC-TTTTTCTTC
747172 AAAGTCCACAACT
1 AAAGTCCACAACT
747185 TCATGGCACA
Statistics
Matches: 131, Mismatches: 30, Indels: 15
0.74 0.17 0.09
Matches are distributed among these distances:
27 19 0.15
29 4 0.03
30 20 0.15
31 4 0.03
32 38 0.29
33 46 0.35
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.33
Consensus pattern (32 bp):
AAAGTCCACAACTCCGTGACACCTTTTTCTTC
Found at i:747114 original size:33 final size:33
Alignment explanation
Indices: 747070--747199 Score: 165
Period size: 33 Copynumber: 4.0 Consensus size: 33
747060 CCGTGACACC
*
747070 CTTTT-AAGTCCACAAATCCATGGCACCTTTTT
1 CTTTTAAAGTCCACAACTCCATGGCACCTTTTT
747102 CTTTTAAAGTCCACAACTCCATGGCACCTTTTT
1 CTTTTAAAGTCCACAACTCCATGGCACCTTTTT
* * * * *
747135 C-GTCAAAGTCCACAACTTCGTGGTACCTTTTT
1 CTTTTAAAGTCCACAACTCCATGGCACCTTTTT
* * *
747167 TTTTTAAAGTCCACAACTTCATGGCACATTTTT
1 CTTTTAAAGTCCACAACTCCATGGCACCTTTTT
747200 TTAATGTCCG
Statistics
Matches: 84, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
32 31 0.37
33 53 0.63
ACGTcount: A:0.25, C:0.27, G:0.11, T:0.38
Consensus pattern (33 bp):
CTTTTAAAGTCCACAACTCCATGGCACCTTTTT
Found at i:747163 original size:65 final size:65
Alignment explanation
Indices: 747075--747199 Score: 187
Period size: 65 Copynumber: 1.9 Consensus size: 65
747065 ACACCCTTTT
*
747075 AAGTCCACAAATCCATGGCACCTTTTTCTTTTAAAGTCCACAACTCCATGGCACCTTTTTCGTCA
1 AAGTCCACAAATCCATGGCACCTTTTTCTTTTAAAGTCCACAACTCCATGGCACATTTTTCGTCA
* * * * * *
747140 AAGTCCACAACTTCGTGGTACCTTTTTTTTTTAAAGTCCACAACTTCATGGCACATTTTT
1 AAGTCCACAAATCCATGGCACCTTTTTCTTTTAAAGTCCACAACTCCATGGCACATTTTT
747200 TTAATGTCCG
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
65 53 1.00
ACGTcount: A:0.26, C:0.27, G:0.11, T:0.36
Consensus pattern (65 bp):
AAGTCCACAAATCCATGGCACCTTTTTCTTTTAAAGTCCACAACTCCATGGCACATTTTTCGTCA
Found at i:747223 original size:30 final size:30
Alignment explanation
Indices: 747071--747214 Score: 110
Period size: 33 Copynumber: 4.6 Consensus size: 30
747061 CGTGACACCC
* * *
747071 TTTT-AAGTCCACAAATCCATGGCACCTTTTT
1 TTTTAAAGTCCACAACTTCATGGCA-C-ATTT
* *
747102 CTTTTAAAGTCCACAACTCCATGGCACCTTT
1 -TTTTAAAGTCCACAACTTCATGGCACATTT
* * * *
747133 TTCGTCAAAGTCCACAACTTCGTGGTACCTTTTTT
1 TT--TTAAAGTCCACAACTTCATGGCA-C--ATTT
747168 TTTTAAAGTCCACAACTTCATGGCACATTT
1 TTTTAAAGTCCACAACTTCATGGCACATTT
* *
747198 TTTTAATGTCCGCAACT
1 TTTTAAAGTCCACAACT
747215 ATGTGGCACC
Statistics
Matches: 93, Mismatches: 13, Indels: 14
0.77 0.11 0.12
Matches are distributed among these distances:
30 20 0.22
31 3 0.03
32 25 0.27
33 40 0.43
35 5 0.05
ACGTcount: A:0.25, C:0.26, G:0.11, T:0.38
Consensus pattern (30 bp):
TTTTAAAGTCCACAACTTCATGGCACATTT
Found at i:747295 original size:33 final size:32
Alignment explanation
Indices: 747255--747765 Score: 408
Period size: 33 Copynumber: 15.8 Consensus size: 32
747245 ATTGTAACCC
** *
747255 TTCTAAAGCCCATGCAAGTCAGTGGCAAACTCT
1 TTCTAAAGCCCACACAAGTCGGTGGC-AACTCT
* * * *
747288 TTCTAAAGCCCACATAAGTTGATGGCAACCCT
1 TTCTAAAGCCCACACAAGTCGGTGGCAACTCT
* *
747320 CTT-AAAAGCCCATACAAGTCGGTGGCAAC-CT
1 -TTCTAAAGCCCACACAAGTCGGTGGCAACTCT
747351 CTTCTAAAGCCCACACAAGTCGGTGGCAACTCTT
1 -TTCTAAAGCCCACACAAGTCGGTGGCAACTC-T
* *
747385 TTCTAAAGCCCACACAAGTTGGTGGC-ATTCCT
1 TTCTAAAGCCCACACAAGTCGGTGGCAACT-CT
* * * *
747417 TCTATAAAGCCCAAACAAGTTGGTGGCAACCCT
1 T-TCTAAAGCCCACACAAGTCGGTGGCAACTCT
* * * *
747450 TT-TAAAACCCACATAAGCCGGGTGGCAAC-CC
1 TTCTAAAGCCCACACAAGTC-GGTGGCAACTCT
* * *
747481 TTCCAAAGACCACACAAGTCGATGGCAAC-CTT
1 TTCTAAAGCCCACACAAGTCGGTGGCAACTC-T
** * *
747513 TTCTAAAGCTGACACAAGTTGATGGCAACTCT
1 TTCTAAAGCCCACACAAGTCGGTGGCAACTCT
* * * *
747545 CTCAAAAGCCCATACAAGTCGGTGGCAACCCCT
1 TTCTAAAGCCCACACAAGTCGGTGGCAA-CTCT
* * *
747578 TTCTAAAGTCCACACAAGTCAGTGGCAACCCT
1 TTCTAAAGCCCACACAAGTCGGTGGCAACTCT
* * * * *
747610 CTCAAAAACCCACATAAGTCGGTGGCAACCCCT
1 TTCTAAAGCCCACACAAGTCGGTGGCAA-CTCT
*
747643 TTCTAAAGCCCACACAAGTCGGTGGCAACCCT
1 TTCTAAAGCCCACACAAGTCGGTGGCAACTCT
* ** * *
747675 GCTT-TAAAGCCCACATAAGTCAATTGCAAC-CC
1 --TTCTAAAGCCCACACAAGTCGGTGGCAACTCT
* * *
747707 TTCTAAAGCTCACCCAAGTCGGTGGCAACCCT
1 TTCTAAAGCCCACACAAGTCGGTGGCAACTCT
* *
747739 TCTCAAAAGCCCACACAAGTCGATGGC
1 T-TCTAAAGCCCACACAAGTCGGTGGC
747766 TTCTTCTTCT
Statistics
Matches: 383, Mismatches: 77, Indels: 36
0.77 0.16 0.07
Matches are distributed among these distances:
30 2 0.01
31 49 0.13
32 155 0.40
33 173 0.45
34 4 0.01
ACGTcount: A:0.31, C:0.31, G:0.17, T:0.21
Consensus pattern (32 bp):
TTCTAAAGCCCACACAAGTCGGTGGCAACTCT
Found at i:747338 original size:65 final size:65
Alignment explanation
Indices: 747217--747765 Score: 457
Period size: 65 Copynumber: 8.6 Consensus size: 65
747207 CCGCAACTAT
* * * ** *
747217 GTGGC-ACCCTTT-TAAAG-CC-CACAAGTCAATTGTAA-CC-CTTCTAAAGCCCATGCAAGTCA
1 GTGGCAACCCTTTCTAAAGCCCACACAAGTCGATGGCAACCCTCTTCTAAAGCCCACACAAGTCG
* * * * *
747276 GTGGCAAACTCTTTCTAAAGCCCACATAAGTTGATGGCAACCCTCTT-AAAAGCCCATACAAGTC
1 GTGGC-AACCCTTTCTAAAGCCCACACAAGTCGATGGCAACCCTCTTCTAAAGCCCACACAAGTC
747340 G
65 G
* * * *
747341 GTGGCAA-CCTCTTCTAAAGCCCACACAAGTCGGTGGCAACTCTTTTCTAAAGCCCACACAAGTT
1 GTGGCAACCCT-TTCTAAAGCCCACACAAGTCGATGGCAACCCTCTTCTAAAGCCCACACAAGTC
747405 G
65 G
** * * * * * * *
747406 GTGGCATTCCTTCTATAAAGCCCAAACAAGTTGGTGGCAACCCT-TT-TAAAACCCACATAAGCC
1 GTGGCAACCCTT-TCTAAAGCCCACACAAGTCGATGGCAACCCTCTTCTAAAGCCCACACAAGTC
747469 GG
65 -G
* * * ** *
747471 GTGGCAACCC-TTCCAAAGACCACACAAGTCGATGGCAA-CCTTTTCTAAAGCTGACACAAGTTG
1 GTGGCAACCCTTTCTAAAGCCCACACAAGTCGATGGCAACCCTCTTCTAAAGCCCACACAAGTCG
* * * * * * *
747534 ATGGCAACTCTCTCAAAAGCCCATACAAGTCGGTGGCAACCC-CTTTCTAAAGTCCACACAAGTC
1 GTGGCAACCCTTTCTAAAGCCCACACAAGTCGATGGCAACCCTC-TTCTAAAGCCCACACAAGTC
*
747598 A
65 G
* * * * *
747599 GTGGCAACCCTCTCAAAAACCCACATAAGTCGGTGGCAACCC-CTTTCTAAAGCCCACACAAGTC
1 GTGGCAACCCTTTCTAAAGCCCACACAAGTCGATGGCAACCCTC-TTCTAAAGCCCACACAAGTC
747663 G
65 G
* * * * *
747664 GTGGCAACCCTGCTT-TAAAGCCCACATAAGTCAATTGCAA-CC-CTTCTAAAGCTCACCCAAGT
1 GTGGCAACCCT--TTCTAAAGCCCACACAAGTCGATGGCAACCCTCTTCTAAAGCCCACACAAGT
747726 CG
64 CG
*
747728 GTGGCAACCCTTCTCAAAAGCCCACACAAGTCGATGGC
1 GTGGCAACCCTT-TCTAAAGCCCACACAAGTCGATGGC
747766 TTCTTCTTCT
Statistics
Matches: 396, Mismatches: 73, Indels: 37
0.78 0.14 0.07
Matches are distributed among these distances:
59 5 0.01
61 6 0.02
62 9 0.02
63 37 0.09
64 140 0.35
65 145 0.37
66 53 0.13
67 1 0.00
ACGTcount: A:0.31, C:0.31, G:0.17, T:0.21
Consensus pattern (65 bp):
GTGGCAACCCTTTCTAAAGCCCACACAAGTCGATGGCAACCCTCTTCTAAAGCCCACACAAGTCG
Found at i:747355 original size:97 final size:94
Alignment explanation
Indices: 747250--747765 Score: 473
Period size: 97 Copynumber: 5.3 Consensus size: 94
747240 AGTCAATTGT
** * * *
747250 AACCCTTCTAAAGCCCATGCAAGTCAGTGGCAAACTCTTTCTAAAGCCCACATAAGTTGATGGCA
1 AACCCTTCTAAAGCCCACACAAGTCGGTGGC-AACCCTTTCTAAAGCCCACACAAGTTGATGGCA
*
747315 ACCCTCTTAAAAGCCCATACAAGTCGGTGGC
65 ACCCT-TTAAAAGCCCACACAAGTCGGTGGC
* *
747346 AACCTCTTCTAAAGCCCACACAAGTCGGTGGCAACTCTTTTCTAAAGCCCACACAAGTTGGTGGC
1 AACC-CTTCTAAAGCCCACACAAGTCGGTGGCAAC-CCTTTCTAAAGCCCACACAAGTTGATGGC
** * *
747411 ATTCCTTCTATAAAGCCCAAACAAGTTGGTGGC
64 AACCCTT-TA-AAAGCCCACACAAGTCGGTGGC
* * * * * * *
747444 AACCCTTTTAAAACCCACATAAGCCGGGTGGCAACCC-TTCCAAAGACCACACAAGTCGATGGCA
1 AACCCTTCTAAAGCCCACACAAGTC-GGTGGCAACCCTTTCTAAAGCCCACACAAGTTGATGGCA
* * ** * *
747508 ACCTTTTCTAAAGCTGACACAAGTTGATGGC
65 ACCCTTT-AAAAGCCCACACAAGTCGGTGGC
* * * * *
747539 AACTCTCTCAAAAGCCCATACAAGTCGGTGGCAACCCCTTTCTAAAGTCCACACAAG-TCAGTGG
1 AACCCT-TCTAAAGCCCACACAAGTCGGTGGCAA-CCCTTTCTAAAGCCCACACAAGTTGA-TGG
* * *
747603 CAACCCTCTCAAAAACCCACATAAGTCGGTGGC
63 CAACCCT-TTAAAAGCCCACACAAGTCGGTGGC
* ** *
747636 AACCCCTTTCTAAAGCCCACACAAGTCGGTGGCAACCCTGCTT-TAAAGCCCACATAAGTCAATT
1 AA-CCC-TTCTAAAGCCCACACAAGTCGGTGGCAACCCT--TTCTAAAGCCCACACAAGTTGATG
* *
747700 GCAACCCTTCT-AAAGCTCACCCAAGTCGGTGGC
62 GCAACCCTT-TAAAAGCCCACACAAGTCGGTGGC
*
747733 AACCCTTCTCAAAAGCCCACACAAGTCGATGGC
1 AACCCTTCT--AAAGCCCACACAAGTCGGTGGC
747766 TTCTTCTTCT
Statistics
Matches: 339, Mismatches: 62, Indels: 37
0.77 0.14 0.08
Matches are distributed among these distances:
95 36 0.11
96 54 0.16
97 162 0.48
98 83 0.24
99 4 0.01
ACGTcount: A:0.31, C:0.31, G:0.17, T:0.21
Consensus pattern (94 bp):
AACCCTTCTAAAGCCCACACAAGTCGGTGGCAACCCTTTCTAAAGCCCACACAAGTTGATGGCAA
CCCTTTAAAAGCCCACACAAGTCGGTGGC
Found at i:748018 original size:14 final size:14
Alignment explanation
Indices: 747999--748027 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
747989 GTCACTGGCC
747999 TTGAATCAACACAT
1 TTGAATCAACACAT
748013 TTGAATCAACACAT
1 TTGAATCAACACAT
748027 T
1 T
748028 GGCATTTTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (14 bp):
TTGAATCAACACAT
Found at i:748081 original size:52 final size:52
Alignment explanation
Indices: 748013--748421 Score: 303
Period size: 52 Copynumber: 8.1 Consensus size: 52
748003 ATCAACACAT
* *
748013 TTGAATCAACACATTGGCATTTTTCTCATCTTTAAGCCCAATATCGCTGGCC
1 TTGAATCAACACATTGGCATTTTTCTCATTTTTAAGCCCAATGTCGCTGGCC
* * * *
748065 TTGAATCAGCATATTGG---------CA--TTTAAGCCCAATGTTGCTGGCT
1 TTGAATCAACACATTGGCATTTTTCTCATTTTTAAGCCCAATGTCGCTGGCC
* * * * *
748106 TTGAAT-AGCACATTAGCATTTTTCTCATCTTTAAGCCCAATATCGTTGG-C
1 TTGAATCAACACATTGGCATTTTTCTCATTTTTAAGCCCAATGTCGCTGGCC
* * * * ** * * *
748156 TGTGAATTAGCATATTAGCACCTTTATCATTTTTAAGCCCAATGTTGCTGGAC
1 T-TGAATCAACACATTGGCATTTTTCTCATTTTTAAGCCCAATGTCGCTGGCC
* * * * * *
748209 TTGTATTAGCACATTGGCATTCTTCT--TTTTCTAAGTCCAGTGTCGCT-GCC
1 TTGAATCAACACATTGGCATTTTTCTCATTTT-TAAGCCCAATGTCGCTGGCC
* * *
748259 TTGAATCAACACATTGGAATTCTTCTCATTTTTAAGCCCAATGTCGCTAGCC
1 TTGAATCAACACATTGGCATTTTTCTCATTTTTAAGCCCAATGTCGCTGGCC
* * * * *
748311 TTGAATCAACACGTTAGCATTCTTCTTATTTTTAAGCCCAATGTTGCTGGCC
1 TTGAATCAACACATTGGCATTTTTCTCATTTTTAAGCCCAATGTCGCTGGCC
* ** * * *
748363 TTGAATCAACACATTGGTACATTTCTTATCTTTAAGCCCGATGTCG-TAGGCC
1 TTGAATCAACACATTGGCATTTTTCTCATTTTTAAGCCCAATGTCGCT-GGCC
*
748415 ATGAATC
1 TTGAATC
748422 TACTAACTAG
Statistics
Matches: 286, Mismatches: 52, Indels: 38
0.76 0.14 0.10
Matches are distributed among these distances:
40 8 0.03
41 25 0.09
43 2 0.01
49 2 0.01
50 29 0.10
51 50 0.17
52 168 0.59
53 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.16, T:0.37
Consensus pattern (52 bp):
TTGAATCAACACATTGGCATTTTTCTCATTTTTAAGCCCAATGTCGCTGGCC
Found at i:748103 original size:41 final size:40
Alignment explanation
Indices: 748043--748126 Score: 114
Period size: 41 Copynumber: 2.1 Consensus size: 40
748033 TTTTCTCATC
* *
748043 TTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
1 TTTAAGCCCAATATCGCTGGCCTTGAAT-AGCACATTAGCA
* * *
748084 TTTAAGCCCAATGTTGCTGGCTTTGAATAGCACATTAGCA
1 TTTAAGCCCAATATCGCTGGCCTTGAATAGCACATTAGCA
748124 TTT
1 TTT
748127 TTCTCATCTT
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
40 13 0.34
41 25 0.66
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.33
Consensus pattern (40 bp):
TTTAAGCCCAATATCGCTGGCCTTGAATAGCACATTAGCA
Found at i:748298 original size:102 final size:104
Alignment explanation
Indices: 748182--748379 Score: 274
Period size: 102 Copynumber: 1.9 Consensus size: 104
748172 AGCACCTTTA
* * * * * * *
748182 TCATTTTTAAGCCCAATGTTGCTGGACTTGTATTAGCACATTGGCATTCTTCTT-TTTCTAAGTC
1 TCATTTTTAAGCCCAATGTCGCTAGACTTGAATCAACACATTAGCATTCTTCTTATTTCTAAGCC
*
748246 CAGTGTCGCT-GCCTTGAATCAACACATTGGAATTCTTC
66 CAATGTCGCTGGCCTTGAATCAACACATTGGAATTCTTC
* * *
748284 TCATTTTTAAGCCCAATGTCGCTAGCCTTGAATCAACACGTTAGCATTCTTCTTATTTTTAAGCC
1 TCATTTTTAAGCCCAATGTCGCTAGACTTGAATCAACACATTAGCATTCTTCTTATTTCTAAGCC
*
748349 CAATGTTGCTGGCCTTGAATCAACACATTGG
66 CAATGTCGCTGGCCTTGAATCAACACATTGG
748380 TACATTTCTT
Statistics
Matches: 82, Mismatches: 12, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
102 46 0.56
103 16 0.20
104 20 0.24
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.37
Consensus pattern (104 bp):
TCATTTTTAAGCCCAATGTCGCTAGACTTGAATCAACACATTAGCATTCTTCTTATTTCTAAGCC
CAATGTCGCTGGCCTTGAATCAACACATTGGAATTCTTC
Found at i:749084 original size:21 final size:21
Alignment explanation
Indices: 749060--749112 Score: 81
Period size: 20 Copynumber: 2.6 Consensus size: 21
749050 TTTGATAATT
749060 TGTATCGATACAATAAGTAAA
1 TGTATCGATACAATAAGTAAA
* *
749081 TGTATCGATAC-ATTAGTGAA
1 TGTATCGATACAATAAGTAAA
749101 TGTATCGATACA
1 TGTATCGATACA
749113 TGTCTAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 18 0.62
21 11 0.38
ACGTcount: A:0.40, C:0.11, G:0.17, T:0.32
Consensus pattern (21 bp):
TGTATCGATACAATAAGTAAA
Found at i:749104 original size:20 final size:20
Alignment explanation
Indices: 749060--749133 Score: 85
Period size: 21 Copynumber: 3.6 Consensus size: 20
749050 TTTGATAATT
749060 TGTATCGATACAATAAGTAAA
1 TGTATCGATAC-ATAAGTAAA
* *
749081 TGTATCGATACATTAGTGAA
1 TGTATCGATACATAAGTAAA
***
749101 TGTATCGATACATGTCTAAAA
1 TGTATCGATACATAAGT-AAA
749122 TGTATCGATACA
1 TGTATCGATACA
749134 GGACCATTGT
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
20 21 0.46
21 25 0.54
ACGTcount: A:0.39, C:0.12, G:0.16, T:0.32
Consensus pattern (20 bp):
TGTATCGATACATAAGTAAA
Found at i:749123 original size:41 final size:41
Alignment explanation
Indices: 749078--749235 Score: 117
Period size: 41 Copynumber: 3.9 Consensus size: 41
749068 TACAATAAGT
* *
749078 AAATGTATCGATACATTAGTGAATGTATCGATACATGTCTA
1 AAATGTATCGATACATAAGTAAATGTATCGATACATGTCTA
** ** * * * *
749119 AAATGTATCGATACAGGA-CCATTGT-GC-ATTC-TAGTCAAA
1 AAATGTATCGATACATAAGTAAATGTATCGATACAT-GTC-TA
* *
749158 AAATTGCATCGAAACATAAGTAAATGTATCGATACATGTCTA
1 AAA-TGTATCGATACATAAGTAAATGTATCGATACATGTCTA
***
749200 AAATGTATCGATACATGTCTAAAATGTATCGATACA
1 AAATGTATCGATACATAAGT-AAATGTATCGATACA
749236 GGACCATTGT
Statistics
Matches: 86, Mismatches: 23, Indels: 15
0.69 0.19 0.12
Matches are distributed among these distances:
37 1 0.01
38 6 0.07
39 5 0.06
40 15 0.17
41 32 0.37
42 20 0.23
43 6 0.07
44 1 0.01
ACGTcount: A:0.39, C:0.15, G:0.16, T:0.30
Consensus pattern (41 bp):
AAATGTATCGATACATAAGTAAATGTATCGATACATGTCTA
Found at i:749205 original size:21 final size:21
Alignment explanation
Indices: 749179--749235 Score: 114
Period size: 21 Copynumber: 2.7 Consensus size: 21
749169 AAACATAAGT
749179 AAATGTATCGATACATGTCTA
1 AAATGTATCGATACATGTCTA
749200 AAATGTATCGATACATGTCTA
1 AAATGTATCGATACATGTCTA
749221 AAATGTATCGATACA
1 AAATGTATCGATACA
749236 GGACCATTGT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.40, C:0.14, G:0.14, T:0.32
Consensus pattern (21 bp):
AAATGTATCGATACATGTCTA
Found at i:749239 original size:102 final size:100
Alignment explanation
Indices: 749063--749335 Score: 413
Period size: 102 Copynumber: 2.7 Consensus size: 100
749053 GATAATTTGT
* *
749063 ATCGATACAATAAGTAAATGTATCGATACATTAGTGAATGTATCGATACATGTCTAAAATGTATC
1 ATCGAAAC-ATAAGTAAATGTATCGATACATT-CTGAATGTATCGATACATGTCTAAAATGTATC
*
749128 GATACAGGACCATTGTGCATTCTAGTCAAAAAATTGC
64 GATACAGGACCATTGTGCATTCTAGTAAAAAAATTGC
*
749165 ATCGAAACATAAGTAAATGTATCGATACATGTCTAAAATGTATCGATACATGTCTAAAATGTATC
1 ATCGAAACATAAGTAAATGTATCGATACAT-TCT-GAATGTATCGATACATGTCTAAAATGTATC
*
749230 GATACAGGACCATTGTGCATTCTAGTAAAAAAATTGT
64 GATACAGGACCATTGTGCATTCTAGTAAAAAAATTGC
* ***
749267 ATCGAAACATAAGTAAATGTATCGATACATTCTCGGATGTATCGATACAT-TCTCGGATGTATCG
1 ATCGAAACATAAGTAAATGTATCGATACATTCT-GAATGTATCGATACATGTCTAAAATGTATCG
749331 ATACA
65 ATACA
749336 ATTTGCTTTG
Statistics
Matches: 158, Mismatches: 11, Indels: 6
0.90 0.06 0.03
Matches are distributed among these distances:
100 16 0.10
101 40 0.25
102 102 0.65
ACGTcount: A:0.38, C:0.15, G:0.16, T:0.30
Consensus pattern (100 bp):
ATCGAAACATAAGTAAATGTATCGATACATTCTGAATGTATCGATACATGTCTAAAATGTATCGA
TACAGGACCATTGTGCATTCTAGTAAAAAAATTGC
Found at i:749306 original size:20 final size:20
Alignment explanation
Indices: 749283--749335 Score: 106
Period size: 20 Copynumber: 2.6 Consensus size: 20
749273 ACATAAGTAA
749283 ATGTATCGATACATTCTCGG
1 ATGTATCGATACATTCTCGG
749303 ATGTATCGATACATTCTCGG
1 ATGTATCGATACATTCTCGG
749323 ATGTATCGATACA
1 ATGTATCGATACA
749336 ATTTGCTTTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (20 bp):
ATGTATCGATACATTCTCGG
Found at i:752845 original size:2 final size:2
Alignment explanation
Indices: 752833--752863 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
752823 TTTATATTTC
*
752833 TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
752864 GTCTGTTTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:752949 original size:15 final size:16
Alignment explanation
Indices: 752922--752952 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
752912 AAATTGCTAA
752922 AAAATAAATAAAAATG
1 AAAATAAATAAAAATG
752938 AAAATAAA-AAAAATG
1 AAAATAAATAAAAATG
752953 CATAAATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.77, C:0.00, G:0.06, T:0.16
Consensus pattern (16 bp):
AAAATAAATAAAAATG
Found at i:765987 original size:30 final size:30
Alignment explanation
Indices: 765944--766007 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 30
765934 TTGTTCATTA
* *
765944 TATCAATATATTCTGGGTTTTACCCAGATG
1 TATCAATACATTCTGGGTTTTACCCAAATG
* * *
765974 TATCTATACATTCTGTGTTTTATCCAAATG
1 TATCAATACATTCTGGGTTTTACCCAAATG
766004 TATC
1 TATC
766008 GATATATTTC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.27, C:0.17, G:0.12, T:0.44
Consensus pattern (30 bp):
TATCAATACATTCTGGGTTTTACCCAAATG
Found at i:768632 original size:28 final size:30
Alignment explanation
Indices: 768601--768659 Score: 86
Period size: 28 Copynumber: 2.0 Consensus size: 30
768591 TTTCACAATC
768601 GGGGATACTCCAA-CCC-TTTTATTTCCAA
1 GGGGATACTCCAACCCCATTTTATTTCCAA
*
768629 GGGGATACTTCAACCCCAATTTTATTTCCAA
1 GGGGATACTCCAACCCC-ATTTTATTTCCAA
768660 AACATCAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
28 12 0.44
29 3 0.11
31 12 0.44
ACGTcount: A:0.27, C:0.27, G:0.14, T:0.32
Consensus pattern (30 bp):
GGGGATACTCCAACCCCATTTTATTTCCAA
Found at i:768778 original size:80 final size:78
Alignment explanation
Indices: 768394--768884 Score: 488
Period size: 79 Copynumber: 6.2 Consensus size: 78
768384 ATTTCCGAGA
* * *
768394 GGATACTCCAACTCC-AGTTTTATTTCTAAAGCATTGATTTTTCATAATCAGGGATACTCCAACC
1 GGATACTCCAACCCCGA-TTTTATTTCTAAAACAATGATTTTTCATAATCAGGGATACTCCAACC
*
768458 CCGTTATTTTCAAGG
65 CCGTTTTTTTCAA-G
*
768473 GGATACTCCAACCCCGATTTTATTTCTAAAACACTGATTTTTCATAATCAGGGATACTCCAACCC
1 GGATACTCCAACCCCGATTTTATTTCTAAAACAATGATTTTTCATAATCAGGGATACTCCAACCC
* *
768538 CGTTATTTTTGAGG
66 CGTT-TTTTTCAAG
* * * * * * *
768552 GGATACTCTAGCCCCGGTTTTATTT-TGAAAACACTAATTTTTCACAATCGGGGATACTCCAA-C
1 GGATACTCCAACCCCGATTTTATTTCT-AAAACAATGATTTTTCATAATCAGGGATACTCCAACC
768615 CC-TTTTATTTCCAAGG
65 CCGTTTT-TTT-CAA-G
* * * * * *
768631 GGATACTTCAACCCCAATTTTATTTCCAAAAC-ATCAATTTTTCACAATCAAGGATACTCCAACC
1 GGATACTCCAACCCCGATTTTATTTCTAAAACAAT-GATTTTTCATAATCAGGGATACTCCAACC
*
768695 CCGTTGTTTTTTAAG
65 CCGTT-TTTTTCAAG
* * * *
768710 GGATACTCCAACCCCGATTTTATTTTCAAAAAAAATGATTTTTCATAATCGGGGATATTCCAACC
1 GGATACTCCAACCCCGATTTTA-TTTCTAAAACAATGATTTTTCATAATCAGGGATACTCCAACC
*
768775 CCGTTATTTTTGAAG
65 CCGTT-TTTTTCAAG
* * *** * ** *
768790 GGATACTTCAACTCCGATTTTATTTCTAAAACACCAATTTTTCACAATTGGGGATACTCCAACCT
1 GGATACTCCAACCCCGATTTTATTTCTAAAACAATGATTTTTCATAATCAGGGATACTCCAACCC
** * *
768855 AATTATTTTCGAG
66 CGTTTTTTTCAAG
768868 GGAATACTCCAACCCCG
1 GG-ATACTCCAACCCCG
768885 TTATTTCTGA
Statistics
Matches: 345, Mismatches: 53, Indels: 28
0.81 0.12 0.07
Matches are distributed among these distances:
76 2 0.01
77 5 0.01
78 14 0.04
79 239 0.69
80 76 0.22
81 7 0.02
82 2 0.01
ACGTcount: A:0.29, C:0.24, G:0.13, T:0.34
Consensus pattern (78 bp):
GGATACTCCAACCCCGATTTTATTTCTAAAACAATGATTTTTCATAATCAGGGATACTCCAACCC
CGTTTTTTTCAAG
Found at i:768821 original size:159 final size:158
Alignment explanation
Indices: 768394--768884 Score: 587
Period size: 158 Copynumber: 3.1 Consensus size: 158
768384 ATTTCCGAGA
* * * * *
768394 GGATACTCCAACTCC-AGTTTTA-TTTCTAAAGCATTGATTTTTCATAATCAGGGATACTCCAAC
1 GGATACTCCAACCCCGA-TTTTATTTTCAAAAACAATGATTTTTCATAATCGGGGATACTCCAAC
* * *
768457 CCCGTTATTTTCAAGGGGATACTCCAACCCCGATTTTATTTCTAAAACACTGATTTTTCATAATC
65 CCCGTTATTTTCAAGGGGATACTTCAACCCCGATTTTATTTCTAAAACAC-AATTTTTCACAATC
*
768522 AGGGATACTCCAACCCCGTTATTTTTGAGG
129 AGGGATACTCCAACCCCGTTATTTTTGAAG
* * * * * * *
768552 GGATACTCTAGCCCCGGTTTTATTTT-GAAAACACTAATTTTTCACAATCGGGGATACTCCAACC
1 GGATACTCCAACCCCGATTTTATTTTCAAAAACAATGATTTTTCATAATCGGGGATACTCCAACC
** * * *
768616 CTTTTATTTCCAAGGGGATACTTCAACCCCAATTTTATTTCCAAAACATCAATTTTTCACAATCA
66 CCGTTATTTTCAAGGGGATACTTCAACCCCGATTTTATTTCTAAAACA-CAATTTTTCACAATCA
* * *
768681 AGGATACTCCAACCCCGTTGTTTTTTAAG
130 GGGATACTCCAACCCCGTTATTTTTGAAG
* *
768710 GGATACTCCAACCCCGATTTTATTTTCAAAAAAAATGATTTTTCATAATCGGGGATATTCCAACC
1 GGATACTCCAACCCCGATTTTATTTTCAAAAACAATGATTTTTCATAATCGGGGATACTCCAACC
* * *
768775 CCGTTATTTTTGAA-GGGATACTTCAACTCCGATTTTATTTCTAAAACACCAATTTTTCACAATT
66 CCGTTA-TTTTCAAGGGGATACTTCAACCCCGATTTTATTTCTAAAACA-CAATTTTTCACAATC
* *** *
768839 GGGGATACTCCAACCTAATTATTTTCG-AG
129 AGGGATACTCCAACCCCGTTATTTTTGAAG
768868 GGAATACTCCAACCCCG
1 GG-ATACTCCAACCCCG
768885 TTATTTCTGA
Statistics
Matches: 279, Mismatches: 48, Indels: 11
0.83 0.14 0.03
Matches are distributed among these distances:
158 156 0.56
159 118 0.42
160 5 0.02
ACGTcount: A:0.29, C:0.24, G:0.13, T:0.34
Consensus pattern (158 bp):
GGATACTCCAACCCCGATTTTATTTTCAAAAACAATGATTTTTCATAATCGGGGATACTCCAACC
CCGTTATTTTCAAGGGGATACTTCAACCCCGATTTTATTTCTAAAACACAATTTTTCACAATCAG
GGATACTCCAACCCCGTTATTTTTGAAG
Found at i:768870 original size:27 final size:28
Alignment explanation
Indices: 768839--768910 Score: 92
Period size: 28 Copynumber: 2.6 Consensus size: 28
768829 TTTCACAATT
*
768839 GGGGATACTCCAACCTAATTATTT-TCGA
1 GGGGATACTCCAACCCAATTATTTCT-GA
* **
768867 GGGAATACTCCAACCCCGTTATTTCTGA
1 GGGGATACTCCAACCCAATTATTTCTGA
768895 GGGGATACTCCAACCC
1 GGGGATACTCCAACCC
768911 TAGTTTTATT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
28 37 0.97
29 1 0.03
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (28 bp):
GGGGATACTCCAACCCAATTATTTCTGA
Found at i:768888 original size:107 final size:107
Alignment explanation
Indices: 768768--768961 Score: 291
Period size: 107 Copynumber: 1.8 Consensus size: 107
768758 TCGGGGATAT
* * * * *
768768 TCCAACCCCGTTATTTTTGAAGGGATACTTCAACTCCGA-TTTTATTTCTAAAACACCAATTTTT
1 TCCAACCCCGTTATTTCTGAAGGGATACTCCAAC-CCGAGTTTTATTTCCAAAACACAAATTTTC
768832 CACAATTGGGGATACTCCAACCTAATTATTTTCGAGGGAATAC
65 CACAATTGGGGATACTCCAACCTAATTATTTTCGAGGGAATAC
* * *
768875 TCCAACCCCGTTATTTCTGAGGGGATACTCCAACCCTAGTTTTATTTCCAAAACATAAATTTTCC
1 TCCAACCCCGTTATTTCTGAAGGGATACTCCAACCCGAGTTTTATTTCCAAAACACAAATTTTCC
*
768940 ACCATTGGGGATACTCCAACCT
66 ACAATTGGGGATACTCCAACCT
768962 CGTTATCTCT
Statistics
Matches: 77, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
106 3 0.04
107 74 0.96
ACGTcount: A:0.29, C:0.25, G:0.13, T:0.33
Consensus pattern (107 bp):
TCCAACCCCGTTATTTCTGAAGGGATACTCCAACCCGAGTTTTATTTCCAAAACACAAATTTTCC
ACAATTGGGGATACTCCAACCTAATTATTTTCGAGGGAATAC
Found at i:768982 original size:107 final size:106
Alignment explanation
Indices: 768763--768983 Score: 266
Period size: 107 Copynumber: 2.1 Consensus size: 106
768753 CATAATCGGG
* * * * *
768763 GATATTCCAACCCCGTTATTTTTGAAGGGATACTTCAACTCCGATTTTATTTCTAAAACACCAAT
1 GATACTCCAACCCCGTTATTTCTGAAGGGATACTCCAACTCCGATTTTATTTCCAAAACACAAAT
* * *
768828 TTTTCACAATTGGGGATACTCCAACCTAATTATTTTCGAGG
66 TTTCCACAATTGGGGATACTCCAACCTAATTATTCTCGAGC
* * *
768869 GAATACTCCAACCCCGTTATTTCTGAGGGGATACTCCAAC-CCTAGTTTTATTTCCAAAACATAA
1 G-ATACTCCAACCCCGTTATTTCTGAAGGGATACTCCAACTCCGA-TTTTATTTCCAAAACACAA
* **
768933 ATTTTCCACCATTGGGGATACTCCAACCTCGTTA-TCTCTGAAGC
64 ATTTTCCACAATTGGGGATACTCCAACCTAATTATTCTC-G-AGC
768977 GATACTC
1 GATACTC
768984 TGACTCCATT
Statistics
Matches: 97, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
106 7 0.07
107 87 0.90
108 3 0.03
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.33
Consensus pattern (106 bp):
GATACTCCAACCCCGTTATTTCTGAAGGGATACTCCAACTCCGATTTTATTTCCAAAACACAAAT
TTTCCACAATTGGGGATACTCCAACCTAATTATTCTCGAGC
Found at i:768997 original size:79 final size:80
Alignment explanation
Indices: 768871--769017 Score: 190
Period size: 79 Copynumber: 1.9 Consensus size: 80
768861 TTTCGAGGGA
* * * *
768871 ATACTCCAACCCCGTTATTTCTGAGGGGATACTCCAACCCTAGTTTTATTTCCAAAACA-TAAAT
1 ATACTCCAACCCCGTTATCTCTGAAGCGATACTCCAACCCTAGTTTTATCTCCAAAACATTAAAT
768935 TTTCCACCATTGGGG
66 TTTCCACCATTGGGG
* ** * *
768950 ATACTCCAACCTCGTTATCTCTGAAGCGATACTCTGACTCC-ATTTTTATCTCCAAAATATTAAA
1 ATACTCCAACCCCGTTATCTCTGAAGCGATACTCCAAC-CCTAGTTTTATCTCCAAAACATTAAA
769014 TTTT
65 TTTT
769018 TCATCAGGAG
Statistics
Matches: 57, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
79 47 0.82
80 10 0.18
ACGTcount: A:0.29, C:0.26, G:0.11, T:0.35
Consensus pattern (80 bp):
ATACTCCAACCCCGTTATCTCTGAAGCGATACTCCAACCCTAGTTTTATCTCCAAAACATTAAAT
TTTCCACCATTGGGG
Found at i:773339 original size:22 final size:22
Alignment explanation
Indices: 773284--773389 Score: 90
Period size: 22 Copynumber: 4.8 Consensus size: 22
773274 ATACATCACA
* *
773284 ATAATAATATATACATATGACT
1 ATAATAATATGTACATATGATT
773306 ATAATAATATGTACATATGATT
1 ATAATAATATGTACATATGATT
*
773328 ATAACTGA-ATGTACATATGATT
1 ATAA-TAATATGTACATATGATT
* ** * *
773350 TTAGCAATATGTATATATAATT
1 ATAATAATATGTACATATGATT
* *
773372 AGAACTAA-ATATACATAT
1 ATAA-TAATATGTACATAT
773390 AACTATATTT
Statistics
Matches: 66, Mismatches: 15, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
21 1 0.02
22 61 0.92
23 4 0.06
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.38
Consensus pattern (22 bp):
ATAATAATATGTACATATGATT
Found at i:773345 original size:44 final size:44
Alignment explanation
Indices: 773292--773396 Score: 120
Period size: 44 Copynumber: 2.4 Consensus size: 44
773282 CAATAATAAT
* * * *
773292 ATATACATATGACTATAATAATATGTACATATGATTATAACTGA
1 ATATACATATGACTATAACAATATGTACATATAATTAGAACTAA
* * * * *
773336 ATGTACATATGATTTTAGCAATATGTATATATAATTAGAACTAA
1 ATATACATATGACTATAACAATATGTACATATAATTAGAACTAA
*
773380 ATATACATATAACTATA
1 ATATACATATGACTATA
773397 TTTGAACCAA
Statistics
Matches: 48, Mismatches: 13, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
44 48 1.00
ACGTcount: A:0.46, C:0.09, G:0.09, T:0.37
Consensus pattern (44 bp):
ATATACATATGACTATAACAATATGTACATATAATTAGAACTAA
Found at i:773428 original size:22 final size:21
Alignment explanation
Indices: 773400--773473 Score: 76
Period size: 21 Copynumber: 3.5 Consensus size: 21
773390 AACTATATTT
*
773400 GAACCAACCTCCTTCACAAAGA
1 GAACCAACCT-CTTTACAAAGA
* * *
773422 GAACCAACTTCTTTACTAAGG
1 GAACCAACCTCTTTACAAAGA
* *
773443 GAACCAAACTCTTTACAAAAA
1 GAACCAACCTCTTTACAAAGA
*
773464 AAACCAACCT
1 GAACCAACCT
773474 TTCATTAGAG
Statistics
Matches: 41, Mismatches: 11, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
21 32 0.78
22 9 0.22
ACGTcount: A:0.43, C:0.30, G:0.08, T:0.19
Consensus pattern (21 bp):
GAACCAACCTCTTTACAAAGA
Found at i:775014 original size:21 final size:19
Alignment explanation
Indices: 774999--775040 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
774989 ATTATATTAA
774999 TATATATTATTTTTATATT
1 TATATATTATTTTTATATT
* *
775018 TATATATTATATCTAT-TT
1 TATATATTATTTTTATATT
775036 TATAT
1 TATAT
775041 TGTAAATATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (19 bp):
TATATATTATTTTTATATT
Found at i:775034 original size:25 final size:22
Alignment explanation
Indices: 774990--775051 Score: 65
Period size: 24 Copynumber: 2.7 Consensus size: 22
774980 CATTTTTCAA
774990 TTATA-TTAATA-TATATTATTT
1 TTATATTTAATATTATATTA-TT
775011 TTATATTTATATATTATATCTATT
1 TTATATTTA-ATATTATAT-TATT
775035 TTATATTGTAAATATTA
1 TTATATT-T-AATATTA
775052 ATAAATATAT
Statistics
Matches: 35, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
21 5 0.14
22 3 0.09
23 3 0.09
24 14 0.40
25 9 0.26
26 1 0.03
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.60
Consensus pattern (22 bp):
TTATATTTAATATTATATTATT
Found at i:789275 original size:13 final size:13
Alignment explanation
Indices: 789252--789285 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
789242 ATAAGCATAA
789252 TTTAT-TAACATG
1 TTTATCTAACATG
789264 TTTATCTAACATG
1 TTTATCTAACATG
789277 TTTATCTAA
1 TTTATCTAA
789286 ATGATAGCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 5 0.24
13 16 0.76
ACGTcount: A:0.32, C:0.12, G:0.06, T:0.50
Consensus pattern (13 bp):
TTTATCTAACATG
Found at i:789365 original size:18 final size:18
Alignment explanation
Indices: 789339--789380 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
789329 TATTAATGAA
* * *
789339 TTATTTAACAAATTGATT
1 TTATATAACAAAATAATT
789357 TTATATAACAAAATAATT
1 TTATATAACAAAATAATT
789375 TTATAT
1 TTATAT
789381 GTTTTTTATG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.45, C:0.05, G:0.02, T:0.48
Consensus pattern (18 bp):
TTATATAACAAAATAATT
Found at i:789412 original size:3 final size:3
Alignment explanation
Indices: 789404--789430 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
789394 AAAAATATTG
789404 ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA
789431 TAACTAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:789923 original size:2 final size:2
Alignment explanation
Indices: 789916--789952 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
789906 TATTCATTTA
789916 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
789953 ATATATATAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:789957 original size:2 final size:2
Alignment explanation
Indices: 789952--789990 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
789942 TCTCTCTCTC
789952 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
789991 GAAATTCATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:792791 original size:17 final size:17
Alignment explanation
Indices: 792731--792793 Score: 67
Period size: 18 Copynumber: 3.7 Consensus size: 17
792721 CGAGAAATTT
*
792731 ATTTTTCATAATTTTAAA
1 ATTTTTAATAATTTT-AA
*
792749 ATTTTT-AT-ATATTAA
1 ATTTTTAATAATTTTAA
*
792764 TTTTTTGAATAATTTTAA
1 ATTTTT-AATAATTTTAA
792782 ATTTTTAATAAT
1 ATTTTTAATAAT
792794 AAAATACATT
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
15 7 0.18
16 4 0.11
17 10 0.26
18 17 0.45
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.59
Consensus pattern (17 bp):
ATTTTTAATAATTTTAA
Found at i:793342 original size:27 final size:26
Alignment explanation
Indices: 793290--793342 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
793280 CATTTGTACT
*
793290 TTTTTTTAATATTTTTATAACTATAA
1 TTTTTTTAATATTTTTATAACAATAA
793316 TTTTTTTAATAATTATTTA-AACAATAA
1 TTTTTTTAAT-ATT-TTTATAACAATAA
793343 AATTGTGTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
26 10 0.42
27 10 0.42
28 4 0.17
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.57
Consensus pattern (26 bp):
TTTTTTTAATATTTTTATAACAATAA
Found at i:795167 original size:58 final size:58
Alignment explanation
Indices: 795089--795249 Score: 200
Period size: 58 Copynumber: 2.8 Consensus size: 58
795079 ACGAAAGTCC
* * *
795089 CTAGATTATGAAAAATGACCTAAATGACATCAATATTCAAAAAATTTCATCAAAATCT
1 CTAGATCATGAAAAATGACCTAAATGACATCAATATTCATAAAATTACATCAAAATCT
* * * * *
795147 CTAGATCATTG-AAAACGACCTAAATAACATCAACATTCATAAAATTACATCGAAGTCT
1 CTAGATCA-TGAAAAATGACCTAAATGACATCAATATTCATAAAATTACATCAAAATCT
* *
795205 TTAGTTCATGAAAAATGACCTAAATGACATC-ATCATTCATAAAAT
1 CTAGATCATGAAAAATGACCTAAATGACATCAAT-ATTCATAAAAT
795250 GATGTAAAAA
Statistics
Matches: 87, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
57 3 0.03
58 82 0.94
59 2 0.02
ACGTcount: A:0.46, C:0.17, G:0.08, T:0.29
Consensus pattern (58 bp):
CTAGATCATGAAAAATGACCTAAATGACATCAATATTCATAAAATTACATCAAAATCT
Found at i:797152 original size:3 final size:3
Alignment explanation
Indices: 797144--797181 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
797134 ATAGCCATTT
797144 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
797182 TTATTATTAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:797186 original size:3 final size:3
Alignment explanation
Indices: 797180--797222 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
797170 ATAATAATAA
797180 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
797223 TTCTAGCCTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:802526 original size:13 final size:13
Alignment explanation
Indices: 802508--802542 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
802498 CTATTCACAA
802508 TGTATCGATACAC
1 TGTATCGATACAC
802521 TGTATCGATACAC
1 TGTATCGATACAC
802534 TGTATCGAT
1 TGTATCGAT
802543 CCATGAATAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (13 bp):
TGTATCGATACAC
Found at i:802581 original size:33 final size:32
Alignment explanation
Indices: 802534--802660 Score: 120
Period size: 32 Copynumber: 4.0 Consensus size: 32
802524 ATCGATACAC
* *
802534 TGTATCGATCCATGAATAGTGATGAACAGTGA
1 TGTATCGATACATGAACAGTGATGAACAGTGA
* *
802566 TTTTATCGATACATGAATAGTGAT--ACA-TGAA
1 -TGTATCGATACATGAACAGTGATGAACAGTG-A
* * *
802597 CAGTAT-GAATA-GTGAGCAGTGATGAACAGTGA
1 -TGTATCG-ATACATGAACAGTGATGAACAGTGA
802629 TGTATCGATACATGAACAGTGATGAACAGTGA
1 TGTATCGATACATGAACAGTGATGAACAGTGA
802661 AAATGAGATT
Statistics
Matches: 76, Mismatches: 11, Indels: 15
0.75 0.11 0.15
Matches are distributed among these distances:
30 12 0.16
31 17 0.22
32 24 0.32
33 23 0.30
ACGTcount: A:0.37, C:0.11, G:0.24, T:0.28
Consensus pattern (32 bp):
TGTATCGATACATGAACAGTGATGAACAGTGA
Found at i:802706 original size:13 final size:13
Alignment explanation
Indices: 802688--802712 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
802678 TGCCAATGCT
802688 ATGTATCGATACA
1 ATGTATCGATACA
802701 ATGTATCGATAC
1 ATGTATCGATAC
802713 TTAGCAAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:802833 original size:21 final size:21
Alignment explanation
Indices: 802793--802833 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
802783 GTCAACCTTG
*
802793 TGTATTGATACCAATAGTATA
1 TGTATTGATACCAACAGTATA
802814 TGTATTGATA-CAACACGTAT
1 TGTATTGATACCAACA-GTAT
802834 TTTTACTTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.37
Consensus pattern (21 bp):
TGTATTGATACCAACAGTATA
Found at i:808685 original size:39 final size:39
Alignment explanation
Indices: 808634--808712 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
808624 TGATGCGACA
* *
808634 TGTAAAATATGGTGAATTACTCATGCAAATTTTTGTTTT
1 TGTAAAACATGGTGAATTACCCATGCAAATTTTTGTTTT
808673 TGTAAAACATGGTGAATTACCCATGCAAATTTTTGTTTT
1 TGTAAAACATGGTGAATTACCCATGCAAATTTTTGTTTT
808712 T
1 T
808713 CCTAACTAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.30, C:0.10, G:0.15, T:0.44
Consensus pattern (39 bp):
TGTAAAACATGGTGAATTACCCATGCAAATTTTTGTTTT
Found at i:812917 original size:18 final size:17
Alignment explanation
Indices: 812894--812931 Score: 58
Period size: 18 Copynumber: 2.2 Consensus size: 17
812884 GTTTGCTTTG
812894 TTTTTTCCTTTTTTCTCT
1 TTTTTTCCTTTTTTCT-T
*
812912 TTTTTTTCTTTTTTCTT
1 TTTTTTCCTTTTTTCTT
812929 TTT
1 TTT
812932 CTCTCTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 4 0.21
18 15 0.79
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (17 bp):
TTTTTTCCTTTTTTCTT
Found at i:812931 original size:26 final size:26
Alignment explanation
Indices: 812894--812944 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
812884 GTTTGCTTTG
*
812894 TTTTTTCCTTTTTTCTCTTTTTTTTC
1 TTTTTTCCTTTTCTCTCTTTTTTTTC
*
812920 TTTTTTCTTTTTCTCTCTTTTTTTT
1 TTTTTTCCTTTTCTCTCTTTTTTTT
812945 TTACTTGCTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (26 bp):
TTTTTTCCTTTTCTCTCTTTTTTTTC
Found at i:813347 original size:37 final size:37
Alignment explanation
Indices: 813299--813373 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
813289 CTGACTTAAT
813299 GGGAGTTTAATAAGATGAATTTTAAAAATTTTAAATC
1 GGGAGTTTAATAAGATGAATTTTAAAAATTTTAAATC
813336 GGGAGTTTAATAAGATGAATTTTAAAAATTTTAAATC
1 GGGAGTTTAATAAGATGAATTTTAAAAATTTTAAATC
813373 G
1 G
813374 AGAAAAATTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.43, C:0.03, G:0.17, T:0.37
Consensus pattern (37 bp):
GGGAGTTTAATAAGATGAATTTTAAAAATTTTAAATC
Found at i:814008 original size:164 final size:165
Alignment explanation
Indices: 813353--814010 Score: 701
Period size: 167 Copynumber: 4.0 Consensus size: 165
813343 TAATAAGATG
** * * ** *
813353 AATTTTAAAAATTTTAAATCGAGAAAAATTTCCTCAAAAATATTTACGGAGTAGAAAAC-TCAGT
1 AATTTTAAAAATTAAAAACCAAGAAAAATCCCCTCGAAAATATTTACGGAGTAGAAAACTTC-GT
* * * ** * * *
813417 -TTTT-CAAAAATAGGGGCATTTTAAGGAAAAAATAAAAAACTAATGAAAATAAATGCATTTTTC
65 ATTTTGGAAACAT-GAGAAATTTCAA--AAAAAATAAAAAACTCATGAAAATAAATGAATTTTTC
* *
813480 AAATA-TGATTTAATATGAATTAAATTATGATATTTTATA
127 AAA-ACTGATTTAATATGAATTAAATAATAATATTTTATA
* * *
813519 AATTTTAAAAATTAAAAACCAAGAAAAAT-CCCTCTGAAAACATTTATGGAGTAGAAAACTCCGT
1 AATTTTAAAAATTAAAAACCAAGAAAAATCCCCTC-GAAAATATTTACGGAGTAGAAAACTTCGT
* * * * *
813583 ATTTTGGAAACAGGA-AAATTTCAAGAAAAAAATAAAAAAACTCATGAAAGTGAATTAATTTTTG
65 ATTTTGGAAACATGAGAAATTTC-A-AAAAAAAT-AAAAAACTCATGAAAATAAATGAATTTTTC
813647 AAAACTGATTTAATATGAATTAAATAATAATATTTTATA
127 AAAACTGATTTAATATGAATTAAATAATAATATTTTATA
813686 AATTTTAAAAATTAAAAACCAAGAAAAATCCTCC-CGAAAATATTTACGGAGTAGAAAACTTCGT
1 AATTTTAAAAATTAAAAACCAAGAAAAATCC-CCTCGAAAATATTTACGGAGTAGAAAACTTCGT
* * * * * *
813750 ATATTGGAAACATGGGGAATTTCAAAAAAAATAAAAAACTCATGAATATTAATGAATTTTTAAAA
65 ATTTTGGAAACATGAGAAATTTCAAAAAAAATAAAAAACTCATGAAAATAAATGAATTTTTCAAA
* *
813815 ACTGATTTAATATGAATTAAATAATAATATTTGATG
130 ACTGATTTAATATGAATTAAATAATAATATTTTATA
* *
813851 AATTTTAAAAATTAAAAA-CAA-AAAAAGTCCCCTCGAAAATATTTACGAAGTATAAAACTTCGT
1 AATTTTAAAAATTAAAAACCAAGAAAAA-TCCCCTCGAAAATATTTACGGAGTAGAAAACTTCGT
* * * * * *
813914 ATTTTGAAAATATGAGAAA-TTCTAAAAGAAAATCAATAACTC-TTAAAATAAAGGAATTTTTCA
65 ATTTTGGAAACATGAGAAATTTC-AAAA-AAAATAAAAAACTCATGAAAATAAATGAATTTTTCA
* * * *
813977 AAATTGATTTAAAAGTG-TTTAAATGATAATATTT
128 AAACTGATTTAATA-TGAATTAAATAATAATATTT
814011 AAAGAATTTT
Statistics
Matches: 420, Mismatches: 56, Indels: 34
0.82 0.11 0.07
Matches are distributed among these distances:
163 10 0.02
164 95 0.23
165 98 0.23
166 68 0.16
167 134 0.32
168 13 0.03
169 2 0.00
ACGTcount: A:0.49, C:0.09, G:0.11, T:0.32
Consensus pattern (165 bp):
AATTTTAAAAATTAAAAACCAAGAAAAATCCCCTCGAAAATATTTACGGAGTAGAAAACTTCGTA
TTTTGGAAACATGAGAAATTTCAAAAAAAATAAAAAACTCATGAAAATAAATGAATTTTTCAAAA
CTGATTTAATATGAATTAAATAATAATATTTTATA
Found at i:814803 original size:37 final size:36
Alignment explanation
Indices: 814726--814842 Score: 164
Period size: 37 Copynumber: 3.2 Consensus size: 36
814716 TCTATAGTTA
814726 TTATCTTAGCTTTAAAAGATAGAGA-GTAAAGGATG
1 TTATCTTAGCTTTAAAAGATAGAGAGGTAAAGGATG
*
814761 CTATCTTAGCTTTAAAAGATAGAGAGGTTAAAGGATG
1 TTATCTTAGCTTTAAAAGATAGAGAGG-TAAAGGATG
* * * *
814798 TTATCTTAGCTTTAAAAAATAGAGAGGATGAAGGCTA
1 TTATCTTAGCTTTAAAAGATAGAGAGG-TAAAGGATG
814835 TTATCTTA
1 TTATCTTA
814843 ACCTAAAAAA
Statistics
Matches: 73, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
35 24 0.33
36 1 0.01
37 48 0.66
ACGTcount: A:0.38, C:0.08, G:0.21, T:0.32
Consensus pattern (36 bp):
TTATCTTAGCTTTAAAAGATAGAGAGGTAAAGGATG
Found at i:818791 original size:19 final size:21
Alignment explanation
Indices: 818745--818795 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
818735 TTTCAACAAT
818745 TTGTATCGATACAAACAGTAA
1 TTGTATCGATACAAACAGTAA
* *
818766 ATGTATCGATACATA-AGT-A
1 TTGTATCGATACAAACAGTAA
818785 TTGTATCGATA
1 TTGTATCGATA
818796 TAATGTATCG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
19 11 0.41
20 3 0.11
21 13 0.48
ACGTcount: A:0.39, C:0.12, G:0.16, T:0.33
Consensus pattern (21 bp):
TTGTATCGATACAAACAGTAA
Found at i:824365 original size:20 final size:20
Alignment explanation
Indices: 824340--824433 Score: 163
Period size: 20 Copynumber: 4.7 Consensus size: 20
824330 GTTGGAAGCA
824340 ATGTATCGATACAATTCATC
1 ATGTATCGATACAATTCATC
824360 ATGTATCGATACAATTCATC
1 ATGTATCGATACAATTCATC
824380 ATGTATCGATACAATTCATC
1 ATGTATCGATACAATTCATC
*
824400 ATGTATCGATACAATGT-ACC
1 ATGTATCGATACAAT-TCATC
824420 ATGTATCGATACAA
1 ATGTATCGATACAA
824434 ATAGTGGTAG
Statistics
Matches: 72, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
20 71 0.99
21 1 0.01
ACGTcount: A:0.36, C:0.19, G:0.12, T:0.33
Consensus pattern (20 bp):
ATGTATCGATACAATTCATC
Found at i:824485 original size:20 final size:20
Alignment explanation
Indices: 824460--824515 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 20
824450 TACTGCCAGT
824460 TTCATGTATCGATACAATTG
1 TTCATGTATCGATACAATTG
*
824480 TTCATGTATTGATAC-ATTG
1 TTCATGTATCGATACAATTG
**
824499 AACATGTATCGATACAA
1 TTCATGTATCGATACAA
824516 AGCATAATGT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
19 16 0.52
20 15 0.48
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (20 bp):
TTCATGTATCGATACAATTG
Found at i:825526 original size:19 final size:19
Alignment explanation
Indices: 825502--825556 Score: 101
Period size: 19 Copynumber: 2.9 Consensus size: 19
825492 AATTCAACAA
825502 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
825521 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
*
825540 ATTGTATCGATACATAA
1 TTTGTATCGATACATAA
825557 TTAGCTACTG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 35 1.00
ACGTcount: A:0.35, C:0.11, G:0.15, T:0.40
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:825614 original size:13 final size:13
Alignment explanation
Indices: 825596--825660 Score: 121
Period size: 13 Copynumber: 5.0 Consensus size: 13
825586 CATTTTTCTG
825596 TGTATCGATACAT
1 TGTATCGATACAT
825609 TGTATCGATACAT
1 TGTATCGATACAT
*
825622 TGTATCGATATAT
1 TGTATCGATACAT
825635 TGTATCGATACAT
1 TGTATCGATACAT
825648 TGTATCGATACAT
1 TGTATCGATACAT
825661 GGATCTTTGT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 50 1.00
ACGTcount: A:0.31, C:0.14, G:0.15, T:0.40
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:828078 original size:51 final size:53
Alignment explanation
Indices: 828019--828356 Score: 221
Period size: 52 Copynumber: 6.4 Consensus size: 53
828009 CTAAATTCTC
* * * *
828019 CACAATCGGGGATATTCCAACTCTGATTTTATTTTC-AAAACACTAA-TT-TT
1 CACAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAATTTATT
*
828069 CTATAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTATT
1 C-ACAATCGGGGATACTCCAACTCCGATTTTATTTCC-AAAAACACCAATTTATT
* * * ** * * *
828124 CACAATCGGGGATACTCCAACCCCG--TTAATCATCGGGAATACTCCAACCCCGTTATT
1 CACAATCGGGGATACTCCAACTCCGATTTTAT-TTC-CAAAAACACCAA----TTTATT
** * * * * * * * *
828181 TTCGA--GGGGATATTCCAACCCCGGTTTTA-TTGCTAAAACACTAATTTTTT
1 CACAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAATTTATT
* * * * *
828231 CACAATCGGGGATACTCCAACCCCGGTTTTATTTTC-AAAACGCCAATTT-TC
1 CACAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAATTTATT
** *
828282 CTTTAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAAATACCAATTT-TT
1 C-ACAATCGGGGATACTCCAACTCCGATTTTATTTCC-AAAAACACCAATTTATT
*
828336 CACAATCGAGGATACTCCAAC
1 CACAATCGGGGATACTCCAAC
828357 CTCGTTATTT
Statistics
Matches: 222, Mismatches: 47, Indels: 35
0.73 0.15 0.12
Matches are distributed among these distances:
50 7 0.03
51 33 0.15
52 68 0.31
53 39 0.18
54 44 0.20
55 21 0.09
57 10 0.05
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.32
Consensus pattern (53 bp):
CACAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAATTTATT
Found at i:828372 original size:28 final size:28
Alignment explanation
Indices: 828340--828413 Score: 107
Period size: 28 Copynumber: 2.6 Consensus size: 28
828330 ATTTTTCACA
*
828340 ATCGAGGATACTCCAACCTCGTTATTTC
1 ATCGAGGATACTCCAACCTCGTTACTTC
828368 ATCGAGGATACTCCAACCTCGTTACTTC
1 ATCGAGGATACTCCAACCTCGTTACTTC
828396 --CGAGGGGATACTCCAACC
1 ATCGA--GGATACTCCAACC
828414 CCGGCTTTAT
Statistics
Matches: 43, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
26 3 0.07
28 40 0.93
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.26
Consensus pattern (28 bp):
ATCGAGGATACTCCAACCTCGTTACTTC
Found at i:828385 original size:213 final size:212
Alignment explanation
Indices: 828019--828424 Score: 627
Period size: 213 Copynumber: 1.9 Consensus size: 212
828009 CTAAATTCTC
* * * *
828019 CACAATCGGGGATATTCCAACTCTGATTTTATTTTCAAAACACTAATTTTCTATAATCGGGGATA
1 CACAATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTCTATAATCGGGGATA
*
828084 CTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTATTCACAATCGGGGATACTCCAACCCCG
66 CTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTATTCACAATCGAGGATACTCCAACCCCG
* * * *
828149 TTAATCATCGGGAATACTCCAACCCCGTTATTTTCGAGGGGATATTCCAACCCCGGTTTTATTGC
131 TTAATCATCGGGAATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGGCTTTATTGC
828214 TAAAACACTAATTTTTT
196 TAAAACACTAATTTTTT
* * *
828231 CACAATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAACGCCAATTTTCCTTTAATCGGGGAT
1 CACAATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTT-CTATAATCGGGGAT
* *
828296 ACTCCAACTCCGATTTTATTTCCAAAAAATACCAATTT-TTCACAATCGAGGATACTCCAACCTC
65 ACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTATTCACAATCGAGGATACTCCAACCCC
* *
828360 GTTATTTCATCGAGG-ATACTCCAACCTCGTTACTTCCGAGGGGATACTCCAACCCCGGCTTTAT
130 GTTA-ATCATCG-GGAATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGGCTTTAT
828424 T
193 T
828425 CCCAAAATAT
Statistics
Matches: 175, Mismatches: 16, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
212 72 0.41
213 101 0.58
214 2 0.01
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.32
Consensus pattern (212 bp):
CACAATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTCTATAATCGGGGATA
CTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTATTCACAATCGAGGATACTCCAACCCCG
TTAATCATCGGGAATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGGCTTTATTGC
TAAAACACTAATTTTTT
Found at i:828467 original size:212 final size:212
Alignment explanation
Indices: 828014--828467 Score: 617
Period size: 213 Copynumber: 2.1 Consensus size: 212
828004 AGTTTCTAAA
* * * * * *
828014 TTCTCCACAATCGGGGATATTCCAACTCTGATTTTATTTTCAAAACACTAATTTTCTATAATCGG
1 TTCT-CACAATCGGGGATACTCAAACCCCGGTTTTATTTTCAAAACACCAATTTTCTATAATCGG
*
828079 GGATACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTATTCACAATCGGGGATACTCCAA
65 GGATACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTATTCACAATCGAGGATACTCCAA
* * * *
828144 CCCCGTTAATCATCGGGAATACTCCAACCCCGTTATTTTCGAGGGGATATTCCAACCCCGGTTTT
130 CCCCGTTAATCATCGGGAATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGGCTTT
* *
828209 ATTGCTAAAACACTAATT
195 ATTCCCAAAACACTAATT
* * * *
828227 TTTTCACAATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAACGCCAATTTTCCTTTAATCGG
1 TTCTCACAATCGGGGATACTCAAACCCCGGTTTTATTTTCAAAACACCAATTTT-CTATAATCGG
*
828292 GGATACTCCAACTCCGATTTTATTTCCAAAAAATACCAATTT-TTCACAATCGAGGATACTCCAA
65 GGATACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTATTCACAATCGAGGATACTCCAA
* * *
828356 CCTCGTTATTTCATCGAGG-ATACTCCAACCTCGTTACTTCCGAGGGGATACTCCAACCCCGGCT
130 CCCCGTTA-ATCATCG-GGAATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGGCT
* * *
828420 TTATTCCCAAAATATTGA-T
193 TTATTCCCAAAACACTAATT
* *
828439 TTCTCATAATTGGGGATACTCAAACCCCG
1 TTCTCACAATCGGGGATACTCAAACCCCG
828468 TTATTTTCGA
Statistics
Matches: 212, Mismatches: 26, Indels: 7
0.87 0.11 0.03
Matches are distributed among these distances:
212 98 0.46
213 112 0.53
214 2 0.01
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.31
Consensus pattern (212 bp):
TTCTCACAATCGGGGATACTCAAACCCCGGTTTTATTTTCAAAACACCAATTTTCTATAATCGGG
GATACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTATTCACAATCGAGGATACTCCAAC
CCCGTTAATCATCGGGAATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGGCTTTA
TTCCCAAAACACTAATT
Found at i:828519 original size:79 final size:79
Alignment explanation
Indices: 828373--828574 Score: 201
Period size: 79 Copynumber: 2.6 Consensus size: 79
828363 ATTTCATCGA
* * * * * *
828373 GGATACTCCAACCTCGTTACTTCCGAGGGGATACTCCAACCCCGGCTTTATTCCCAAAATATTGA
1 GGATACTCAAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGACTTTATTCCCAAAATATCGA
* **
828438 TTTCTCATAATTGG
66 TTTCTCACAACCGG
* * * ** *
828452 GGATACTCAAACCCCGTTATTTTCGAGGGGATACTCCAATCCCGATTTTTTTTTC-TAATCATCG
1 GGATACTCAAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGACTTTATTCCCAAAAT-ATCG
828516 ATTTCTCACAACCGG
65 ATTTCTCACAACCGG
* * * *
828531 GGATACT-AGAGCCCCGTTATTTTCAAGGGAACACTCCAACCCCG
1 GGATACTCA-AACCCCGTTATTTTCGAGGGGATACTCCAACCCCG
828575 TTATTATCTC
Statistics
Matches: 101, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
78 4 0.04
79 97 0.96
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.30
Consensus pattern (79 bp):
GGATACTCAAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGACTTTATTCCCAAAATATCGA
TTTCTCACAACCGG
Found at i:836286 original size:20 final size:20
Alignment explanation
Indices: 836258--836311 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
836248 GTTGGAAGCA
*
836258 ATGTATCGATACAAT-TCATC
1 ATGTATCGATACAATGT-ACC
*
836278 ATTTATCGATACAATGTACC
1 ATGTATCGATACAATGTACC
836298 ATGTATCGATACAA
1 ATGTATCGATACAA
836312 ACAGTGGTAG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
20 29 0.97
21 1 0.03
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (20 bp):
ATGTATCGATACAATGTACC
Found at i:836382 original size:19 final size:19
Alignment explanation
Indices: 836340--836392 Score: 70
Period size: 19 Copynumber: 2.7 Consensus size: 19
836330 CTGCCAGTTT
* **
836340 CATGTATCGATATAATTGTT
1 CATGTATCGATA-CATTGAA
836360 CATGTATCGATACATTGAA
1 CATGTATCGATACATTGAA
836379 CATGTATCGATACA
1 CATGTATCGATACA
836393 ATGTATCGAT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 18 0.60
20 12 0.40
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.36
Consensus pattern (19 bp):
CATGTATCGATACATTGAA
Found at i:843913 original size:10 final size:10
Alignment explanation
Indices: 843898--843929 Score: 55
Period size: 10 Copynumber: 3.1 Consensus size: 10
843888 AACAATCAGG
843898 AAAAAAAAAC
1 AAAAAAAAAC
843908 AAAAAAAAAAC
1 -AAAAAAAAAC
843919 AAAAAAAAAC
1 AAAAAAAAAC
843929 A
1 A
843930 GATTTTTCTG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 11 0.52
11 10 0.48
ACGTcount: A:0.91, C:0.09, G:0.00, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAC
Found at i:843914 original size:11 final size:11
Alignment explanation
Indices: 843898--843927 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
843888 AACAATCAGG
843898 AAAAAAAAACA
1 AAAAAAAAACA
843909 AAAAAAAAACA
1 AAAAAAAAACA
843920 AAAAAAAA
1 AAAAAAAA
843928 CAGATTTTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.93, C:0.07, G:0.00, T:0.00
Consensus pattern (11 bp):
AAAAAAAAACA
Found at i:846638 original size:33 final size:33
Alignment explanation
Indices: 846598--846666 Score: 111
Period size: 33 Copynumber: 2.1 Consensus size: 33
846588 TACATTGTTA
*
846598 AAATTAAATGATATTATTTCATTAAAAATTTTT
1 AAATTAAATGATATCATTTCATTAAAAATTTTT
* *
846631 AAATTAAATTATATCATTTTATTAAAAATTTTT
1 AAATTAAATGATATCATTTCATTAAAAATTTTT
846664 AAA
1 AAA
846667 AATAATGAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.48, C:0.03, G:0.01, T:0.48
Consensus pattern (33 bp):
AAATTAAATGATATCATTTCATTAAAAATTTTT
Found at i:850108 original size:9 final size:10
Alignment explanation
Indices: 850094--850139 Score: 51
Period size: 11 Copynumber: 4.6 Consensus size: 10
850084 TTTTTATTTA
850094 AATTTT-ATT
1 AATTTTAATT
850103 AATTTTTAATT
1 AA-TTTTAATT
*
850114 ATTTTTAAATT
1 AATTTT-AATT
850125 AATTTT-ATT
1 AATTTTAATT
850134 AATTTT
1 AATTTT
850140 TTATGTTTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
9 11 0.34
10 8 0.25
11 13 0.41
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (10 bp):
AATTTTAATT
Found at i:850114 original size:11 final size:11
Alignment explanation
Indices: 850083--850140 Score: 61
Period size: 10 Copynumber: 5.5 Consensus size: 11
850073 AATCTAAAAG
*
850083 ATTTTTATTTA
1 ATTTTTAATTA
*
850094 AATTTT-ATTA
1 ATTTTTAATTA
850104 ATTTTTAATT-
1 ATTTTTAATTA
850114 ATTTTTAAATTA
1 ATTTTT-AATTA
850126 A-TTTT-ATTA
1 ATTTTTAATTA
850135 ATTTTT
1 ATTTTT
850141 TATGTTTAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
9 5 0.12
10 18 0.45
11 16 0.40
12 1 0.03
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (11 bp):
ATTTTTAATTA
Found at i:854672 original size:2 final size:2
Alignment explanation
Indices: 854665--854717 Score: 106
Period size: 2 Copynumber: 26.5 Consensus size: 2
854655 TATTGTATGT
854665 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
854707 TA TA TA TA TA T
1 TA TA TA TA TA T
854718 GAGAGATAAA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:855547 original size:2 final size:2
Alignment explanation
Indices: 855540--855568 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
855530 TTGTACATTC
855540 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
855569 AAACTCCTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:860270 original size:1 final size:1
Alignment explanation
Indices: 860264--860293 Score: 51
Period size: 1 Copynumber: 30.0 Consensus size: 1
860254 ATGAACTAGG
*
860264 TTTTTTTTTTTTTTTTTTTTTTTTTCTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
860294 CTTTGTTTAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:0.00, C:0.03, G:0.00, T:0.97
Consensus pattern (1 bp):
T
Found at i:869867 original size:3 final size:3
Alignment explanation
Indices: 869859--869889 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
869849 GTATATTTAT
869859 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
869890 AATTGACGAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:870702 original size:20 final size:21
Alignment explanation
Indices: 870650--870702 Score: 74
Period size: 20 Copynumber: 2.6 Consensus size: 21
870640 ATCCTAGAAA
870650 GTATCGATACA-TATCCATAT
1 GTATCGATACATTATCCATAT
* *
870670 GTATCGATACATTATGC-TTT
1 GTATCGATACATTATCCATAT
870690 GTATCGATACATT
1 GTATCGATACATT
870703 GTATCGATAC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 26 0.87
21 4 0.13
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.40
Consensus pattern (21 bp):
GTATCGATACATTATCCATAT
Found at i:870706 original size:13 final size:13
Alignment explanation
Indices: 870688--870714 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
870678 ACATTATGCT
870688 TTGTATCGATACA
1 TTGTATCGATACA
870701 TTGTATCGATACA
1 TTGTATCGATACA
870714 T
1 T
870715 GTTTATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:870724 original size:19 final size:19
Alignment explanation
Indices: 870700--870754 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 19
870690 GTATCGATAC
**
870700 ATTGTATCGATACATGTTT
1 ATTGTATCGATACATGTCA
*
870719 ATTGTATCGATACATACTCA
1 ATTGTATCGATACAT-GTCA
870739 ATTGTATCGATACATG
1 ATTGTATCGATACATG
870755 AAATTGGCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
19 15 0.48
20 16 0.52
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.40
Consensus pattern (19 bp):
ATTGTATCGATACATGTCA
Found at i:871192 original size:13 final size:13
Alignment explanation
Indices: 871174--871200 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
871164 ACATTATGCT
871174 TTGTATCGATACA
1 TTGTATCGATACA
871187 TTGTATCGATACA
1 TTGTATCGATACA
871200 T
1 T
871201 GCATAATTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:875460 original size:13 final size:13
Alignment explanation
Indices: 875442--875479 Score: 76
Period size: 13 Copynumber: 2.9 Consensus size: 13
875432 GGAAATTCAA
875442 TGTATCGATACAT
1 TGTATCGATACAT
875455 TGTATCGATACAT
1 TGTATCGATACAT
875468 TGTATCGATACA
1 TGTATCGATACA
875480 GGGTGATTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.37
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:875622 original size:21 final size:22
Alignment explanation
Indices: 875598--875639 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
875588 TCAAATCTTT
875598 TTCAAAATACTT-GTTTTTCAC
1 TTCAAAATACTTCGTTTTTCAC
*
875619 TTCAAATTACTTCGTTTTTCA
1 TTCAAAATACTTCGTTTTTCA
875640 TCAAAACCAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.26, C:0.19, G:0.05, T:0.50
Consensus pattern (22 bp):
TTCAAAATACTTCGTTTTTCAC
Found at i:875643 original size:20 final size:20
Alignment explanation
Indices: 875599--875645 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 20
875589 CAAATCTTTT
875599 TCAAAATACTTGTTTTTCAC
1 TCAAAATACTTGTTTTTCAC
*
875619 TTCAAATTACTTCGTTTTTCA-
1 -TCAAAATACTT-GTTTTTCAC
875640 TCAAAA
1 TCAAAA
875646 CCAGCATCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 5 0.22
21 10 0.43
22 8 0.35
ACGTcount: A:0.32, C:0.19, G:0.04, T:0.45
Consensus pattern (20 bp):
TCAAAATACTTGTTTTTCAC
Found at i:878031 original size:13 final size:13
Alignment explanation
Indices: 878013--878038 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
878003 TACAGCAAGT
878013 ATGTATCGATACA
1 ATGTATCGATACA
878026 ATGTATCGATACA
1 ATGTATCGATACA
878039 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:884394 original size:21 final size:21
Alignment explanation
Indices: 884347--884395 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
884337 TTAACCATCA
* *
884347 AAGATAATGAAGATGATGACG
1 AAGATGATGAAGAAGATGACG
* * *
884368 ATGATGATGAAGAAGTTGACT
1 AAGATGATGAAGAAGATGACG
884389 AAGATGA
1 AAGATGA
884396 AGAAACAACT
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.45, C:0.04, G:0.29, T:0.22
Consensus pattern (21 bp):
AAGATGATGAAGAAGATGACG
Found at i:885852 original size:20 final size:20
Alignment explanation
Indices: 885827--885868 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
885817 GTTAGTAGGT
885827 GGAGGATTGGACATATGTGG
1 GGAGGATTGGACATATGTGG
885847 GGAGGATTGGACATATGTGG
1 GGAGGATTGGACATATGTGG
885867 GG
1 GG
885869 CGAAAATGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.24, C:0.05, G:0.48, T:0.24
Consensus pattern (20 bp):
GGAGGATTGGACATATGTGG
Found at i:886158 original size:21 final size:21
Alignment explanation
Indices: 886132--886173 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
886122 AGCTACTGCC
*
886132 AAGGAAATGTATCGATACATT
1 AAGGAAATGCATCGATACATT
886153 AAGGAAATGCATCGATACATT
1 AAGGAAATGCATCGATACATT
886174 GCATCGATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.43, C:0.12, G:0.19, T:0.26
Consensus pattern (21 bp):
AAGGAAATGCATCGATACATT
Found at i:886178 original size:13 final size:13
Alignment explanation
Indices: 886160--886185 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
886150 ATTAAGGAAA
886160 TGCATCGATACAT
1 TGCATCGATACAT
886173 TGCATCGATACAT
1 TGCATCGATACAT
886186 CGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (13 bp):
TGCATCGATACAT
Found at i:886201 original size:20 final size:21
Alignment explanation
Indices: 886162--886206 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 21
886152 TAAGGAAATG
886162 CATCGATACATTGCATCGATA
1 CATCGATACATTGCATCGATA
* *
886183 CATCGAT-CTTTGTATCGATA
1 CATCGATACATTGCATCGATA
886203 CATC
1 CATC
886207 TAGGAAGTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 15 0.68
21 7 0.32
ACGTcount: A:0.29, C:0.24, G:0.13, T:0.33
Consensus pattern (21 bp):
CATCGATACATTGCATCGATA
Found at i:888611 original size:51 final size:52
Alignment explanation
Indices: 888546--888677 Score: 185
Period size: 51 Copynumber: 2.6 Consensus size: 52
888536 TTGAGTTTCT
* * * * *
888546 CAATTCTCCGTAATCGGGGATATTCCAACTCCGATTTTATTTTC-AAAACAT
1 CAATTTTCCATAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACAC
*
888597 CAATTTTCTATAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACAC
1 CAATTTTCCATAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACAC
* *
888649 CAATTTTCCACAATCGAGGATACTCCAAC
1 CAATTTTCCATAATCGGGGATACTCCAAC
888678 CCCATTAATC
Statistics
Matches: 71, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
51 39 0.55
52 32 0.45
ACGTcount: A:0.32, C:0.26, G:0.11, T:0.32
Consensus pattern (52 bp):
CAATTTTCCATAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACAC
Found at i:888670 original size:52 final size:51
Alignment explanation
Indices: 888557--888677 Score: 179
Period size: 52 Copynumber: 2.4 Consensus size: 51
888547 AATTCTCCGT
* * * * *
888557 AATCGGGGATATTCCAACTCCGATTTTATTTTCAAAACATCAATTTTCTAT
1 AATCGGGGATACTCCAACTCCGATTTTATTTCCAAAACACCAATTTTCCAC
888608 AATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTCCAC
1 AATCGGGGATACTCCAACTCCGATTTTATTTCC-AAAACACCAATTTTCCAC
*
888660 AATCGAGGATACTCCAAC
1 AATCGGGGATACTCCAAC
888678 CCCATTAATC
Statistics
Matches: 63, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
51 31 0.49
52 32 0.51
ACGTcount: A:0.33, C:0.25, G:0.11, T:0.31
Consensus pattern (51 bp):
AATCGGGGATACTCCAACTCCGATTTTATTTCCAAAACACCAATTTTCCAC
Found at i:888760 original size:28 final size:27
Alignment explanation
Indices: 888661--888762 Score: 152
Period size: 27 Copynumber: 3.7 Consensus size: 27
888651 ATTTTCCACA
*
888661 ATCGAGGATACTCCAACCCCATTAATC
1 ATCGGGGATACTCCAACCCCATTAATC
888688 ATCGGGGATACTCCAACCCCATTAATC
1 ATCGGGGATACTCCAACCCCATTAATC
*
888715 ATCGGGGATACTCCAACCCCATT-ATT
1 ATCGGGGATACTCCAACCCCATTAATC
*
888741 TTCGAGAGGATACTCCAACCCC
1 ATCG-G-GGATACTCCAACCCC
888763 GGCTTTATTC
Statistics
Matches: 70, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
26 5 0.07
27 50 0.71
28 15 0.21
ACGTcount: A:0.29, C:0.33, G:0.15, T:0.23
Consensus pattern (27 bp):
ATCGGGGATACTCCAACCCCATTAATC
Found at i:888819 original size:79 final size:78
Alignment explanation
Indices: 888715--889159 Score: 507
Period size: 79 Copynumber: 5.6 Consensus size: 78
888705 CCCATTAATC
* *
888715 ATCGGGGATACTCCAACCCCATTATTTTCGAGAGGATACTCCAACCCCGGCTTTATTCTTAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGCTTTATT-TTAAAAT
*
888780 ATTGATTTCTCATA
65 ATTAATTTCTCATA
* *
888794 ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGACTTTATTTTCAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGCTTTATTTT-AAAAT
888859 ATTAATTTCTCATA
65 ATTAATTTCTCATA
* * *
888873 ATCGGGGATACTCCAACCCTGTTATTTTCGATGGGATACTCCAACCCCGGCTTTATTTCCAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGCTTTATTT-TAAAAT
888938 ATTAATTTCTCATA
65 ATTAATTTCTCATA
* * *
888952 ATCGGGGATACTCCAACCCTGTTATTTTCGAGGGGATACTCTAACCCCGGCTTTATTTCTAAAAC
1 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGCTTTATTT-TAAAAT
* * *
889017 GTCAATTTTTCATA
65 ATTAATTTCTCATA
* * ** * * * * * ** *
889031 ATCAGGAATACTTTAATCCCGTTATTTCCAAGGGAATACTCCAACCTCGATTTTATTTCTAAAAC
1 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGCTTTATTT-TAAAAT
** *
889096 ACCAA-TTCTCCACA
65 ATTAATTTCT-CATA
* * **
889110 ATAGGGGATACTCCAACTCCGATTA-TTTCGTCCGGGATACTCCAACCCCG
1 ATCGGGGATACTCCAACCCCG-TTATTTTCG-AGGGGATACTCCAACCCCG
889160 TTATTTCGGG
Statistics
Matches: 314, Mismatches: 47, Indels: 9
0.85 0.13 0.02
Matches are distributed among these distances:
78 5 0.02
79 291 0.93
80 18 0.06
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (78 bp):
ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGCTTTATTTTAAAATA
TTAATTTCTCATA
Found at i:889175 original size:25 final size:26
Alignment explanation
Indices: 889113--889184 Score: 101
Period size: 25 Copynumber: 2.7 Consensus size: 26
889103 CTCCACAATA
*
889113 GGGGATACTCCAACTCCGATTATTTC
1 GGGGATACTCCAACCCCGATTATTTC
889139 GTCCGGGATACTCCAACCCCG-TTATTTC
1 G---GGGATACTCCAACCCCGATTATTTC
889167 GGGGATACTCCAACCCCG
1 GGGGATACTCCAACCCCG
889185 GCTTTATTTC
Statistics
Matches: 42, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
25 17 0.40
26 1 0.02
28 8 0.19
29 16 0.38
ACGTcount: A:0.21, C:0.33, G:0.21, T:0.25
Consensus pattern (26 bp):
GGGGATACTCCAACCCCGATTATTTC
Found at i:893209 original size:13 final size:13
Alignment explanation
Indices: 893191--893226 Score: 72
Period size: 13 Copynumber: 2.8 Consensus size: 13
893181 TTTGGTATAA
893191 TTGCACTTAACTT
1 TTGCACTTAACTT
893204 TTGCACTTAACTT
1 TTGCACTTAACTT
893217 TTGCACTTAA
1 TTGCACTTAA
893227 TTGAACTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.25, C:0.22, G:0.08, T:0.44
Consensus pattern (13 bp):
TTGCACTTAACTT
Found at i:894350 original size:13 final size:13
Alignment explanation
Indices: 894332--894356 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
894322 TCACTATTCA
894332 TGTATCGATACAG
1 TGTATCGATACAG
894345 TGTATCGATACA
1 TGTATCGATACA
894357 CTATAAATAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:894890 original size:34 final size:35
Alignment explanation
Indices: 894827--894893 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
894817 CTAAGTGATT
894827 GAGAGGTTCTATCTTAGCCTTTGAAAAAGATAGAGA
1 GAGAGGTTCTATCTTAGCCTTTG-AAAAGATAGAGA
894863 GAGAGGTTTCTATCTTAGCC-TTG-AAAGATAG
1 GAGAGG-TTCTATCTTAGCCTTTGAAAAGATAG
894894 TGTTGTAAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 8 0.27
36 9 0.30
37 13 0.43
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (35 bp):
GAGAGGTTCTATCTTAGCCTTTGAAAAGATAGAGA
Found at i:895221 original size:13 final size:13
Alignment explanation
Indices: 895203--895227 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
895193 ATTACCCAAA
895203 TGTATCGATACAT
1 TGTATCGATACAT
895216 TGTATCGATACA
1 TGTATCGATACA
895228 CTAATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:895281 original size:52 final size:52
Alignment explanation
Indices: 895236--895364 Score: 206
Period size: 52 Copynumber: 2.5 Consensus size: 52
895226 CACTAATCTT
*
895236 TGTATTGATACATGCAGGCAAATTTGCCCAGATGTATC-ATTACACTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGA-TACACTATAAAA
* * *
895288 TGTATCGATACGTACAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
895340 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
895365 TCATATTTCG
Statistics
Matches: 70, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
52 69 0.99
53 1 0.01
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:898901 original size:20 final size:20
Alignment explanation
Indices: 898878--898955 Score: 129
Period size: 20 Copynumber: 3.9 Consensus size: 20
898868 AAAGTACCTA
898878 AATGTATCGATACATTTTTC
1 AATGTATCGATACATTTTTC
* * *
898898 AATGTATCGATACATGTATG
1 AATGTATCGATACATTTTTC
898918 AATGTATCGATACATTTTTC
1 AATGTATCGATACATTTTTC
898938 AATGTATCGATACATTTT
1 AATGTATCGATACATTTT
898956 GTCTTTTTAC
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 52 1.00
ACGTcount: A:0.32, C:0.13, G:0.13, T:0.42
Consensus pattern (20 bp):
AATGTATCGATACATTTTTC
Found at i:905605 original size:28 final size:28
Alignment explanation
Indices: 905548--905625 Score: 97
Period size: 28 Copynumber: 2.8 Consensus size: 28
905538 GGAAATAAAG
*
905548 ACGAGGTTGGAGTATCCCCTCG--GAAGTA
1 ACGAGGTTGGAGTAT--CCTCGATGAAATA
*
905576 ACGGGGTTGGAGTATCCTCGATGAAATA
1 ACGAGGTTGGAGTATCCTCGATGAAATA
*
905604 ACGAGATTGGAGTATCCTCGAT
1 ACGAGGTTGGAGTATCCTCGAT
905626 TGTGAAAAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
26 5 0.11
28 39 0.89
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (28 bp):
ACGAGGTTGGAGTATCCTCGATGAAATA
Found at i:905677 original size:51 final size:51
Alignment explanation
Indices: 905610--905723 Score: 156
Period size: 51 Copynumber: 2.2 Consensus size: 51
905600 AATAACGAGA
* *
905610 TTGGAGTATCCTCGATTGTGAAAAATTAGTGTTTTGGAAATAAAATCGGAG
1 TTGGAGTATCCCCGATTGTGAAAAATTAGTGTTTTAGAAATAAAATCGGAG
* * * * *
905661 TTGGAATATCCCCGATTGTGGAGAATTGGTGTTTTAGAAATAAAATCGGGG
1 TTGGAGTATCCCCGATTGTGAAAAATTAGTGTTTTAGAAATAAAATCGGAG
*
905712 TTCGAGTATCCC
1 TTGGAGTATCCC
905724 TTTGAAAATA
Statistics
Matches: 54, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
51 54 1.00
ACGTcount: A:0.30, C:0.11, G:0.26, T:0.32
Consensus pattern (51 bp):
TTGGAGTATCCCCGATTGTGAAAAATTAGTGTTTTAGAAATAAAATCGGAG
Found at i:905743 original size:79 final size:80
Alignment explanation
Indices: 905660--905835 Score: 255
Period size: 79 Copynumber: 2.2 Consensus size: 80
905650 TAAAATCGGA
* * * * *
905660 GTTGGAATATCCCCGATTGTGGAGAATTGGTGTTTTAGAAATAAAATCG-GGGTTCGAGTATCCC
1 GTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAATCGAGGGTTCGAGTATCCC
* *
905724 TTTGAAAATAACAGG
66 CTCGAAAATAACAGG
* *
905739 GTTGGAGTATCCCTGATTATGAAAAATTGATGTTTTAGAAATAAAATCGAGGGTTGGAGTATCCC
1 GTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAATCGAGGGTTCGAGTATCCC
*
905804 CTCGAAAATAACGGG
66 CTCGAAAATAACAGG
905819 GTTGGAGTATCCCCGAT
1 GTTGGAGTATCCCCGAT
905836 GATTAACGGG
Statistics
Matches: 85, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
79 43 0.51
80 42 0.49
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.30
Consensus pattern (80 bp):
GTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAATCGAGGGTTCGAGTATCCC
CTCGAAAATAACAGG
Found at i:905783 original size:237 final size:239
Alignment explanation
Indices: 905433--905964 Score: 682
Period size: 237 Copynumber: 2.2 Consensus size: 239
905423 GGTTGAAGTG
* * * ** * *
905433 TCCCCGATTATA-GAAAATAGATGTTTCAAAAAT-AAGTCGGGATTAGAGTATCCCCGTGAAAAT
1 TCCCCGATTAAAGGAAAATTGGTGTTTTGAAAATAAAATCGGGGTTAGAGTATCCCCGTGAAAAT
* * *
905496 AATAGGGTTGGAGTATCCCCAATTATGAGAAATTAATATTTTGGAAATAAAGA-CGA-GGTTGGA
66 AACAGGGTTGGAGTATCCCCAATTATGAAAAATTAATATTTTAGAAATAAA-ATCGAGGGTTGGA
* * * *
905559 GTATCCCCTCGGAAGTAACGGGGTTGGAGTATCCTCGATGAAATAACGAGATTGGAGTATCCTCG
130 GTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATG-AATAACGAGATTGGAGTATCCCCG
*
905624 ATTGTGAAAAATTAGTG-TTTTGGAAATAAAATCGGAGTTGGAATA
194 ATTGTGAAAAATTAGTGTTTTTGGAAATAAAATCAGAGTTGGAATA
** * * **
905669 TCCCCGATT-GTGGAGAATTGGTGTTTT-AGAAATAAAATCGGGGTTCGAGTATCCCTTTGAAAA
1 TCCCCGATTAAAGGAAAATTGGTGTTTTGA-AAATAAAATCGGGGTTAGAGTATCCCCGTGAAAA
** * *
905732 TAACAGGGTTGGAGTATCCCTGATTATGAAAAATTGATGTTTTAGAAATAAAATCGAGGGTTGGA
65 TAACAGGGTTGGAGTATCCCCAATTATGAAAAATTAATATTTTAGAAATAAAATCGAGGGTTGGA
* * * *
905797 GTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATGATTAACGGGGTTTGAGTATCCCCGA
130 GTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATGAATAACGAGATTGGAGTATCCCCGA
* *
905862 TTGTGAAAAATTGGTGTTTTTGGAAATAAAATCAGAGTTGGAGTA
195 TTGTGAAAAATTAGTGTTTTTGGAAATAAAATCAGAGTTGGAATA
* * *
905907 TCCCCGATTAAAGGAAAATTGGTGTTTTGAAAATAAAACCGGGGTTGGAGTGTCCCCG
1 TCCCCGATTAAAGGAAAATTGGTGTTTTGAAAATAAAATCGGGGTTAGAGTATCCCCG
905965 ATTGTGGAAA
Statistics
Matches: 251, Mismatches: 37, Indels: 13
0.83 0.12 0.04
Matches are distributed among these distances:
235 1 0.00
236 25 0.10
237 107 0.43
238 79 0.31
239 38 0.15
240 1 0.00
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.29
Consensus pattern (239 bp):
TCCCCGATTAAAGGAAAATTGGTGTTTTGAAAATAAAATCGGGGTTAGAGTATCCCCGTGAAAAT
AACAGGGTTGGAGTATCCCCAATTATGAAAAATTAATATTTTAGAAATAAAATCGAGGGTTGGAG
TATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATGAATAACGAGATTGGAGTATCCCCGAT
TGTGAAAAATTAGTGTTTTTGGAAATAAAATCAGAGTTGGAATA
Found at i:905803 original size:52 final size:51
Alignment explanation
Indices: 905737--906081 Score: 254
Period size: 51 Copynumber: 6.6 Consensus size: 51
905727 GAAAATAACA
*
905737 GGGTTGGAGTATCCCTGATTATGAAAAATTGATGTTTTAGAAATAAAATCG
1 GGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAATCG
** *** *** * *
905788 AGGGTTGGAGTATCCCCTCGAAAAT-AACGGGGTTGGA-GTATCCCCGATGAT-TAA-CG
1 -GGGTTGGAGTAT-CCC-CGATTATGAA--AAATT-GATGT-T-TTAGA-AATAAAATCG
* * * * *
905844 GGGTTTGAGTATCCCCGATTGTGAAAAATTGGTGTTTTTGGAAATAAAATCA
1 GGGTTGGAGTATCCCCGATTATGAAAAATTGATG-TTTTAGAAATAAAATCG
* * * * *
905896 GAGTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTT-GAAAATAAAACCG
1 GGGTTGGAGTATCCCCGATT-ATGAAAAATTGATGTTTTAG-AAATAAAATCG
* * * * *
905948 GGGTTGGAGTGTCCCCGATTGTGGAAAATTGGTG-TTTCGAAAATAAAATCG
1 GGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAG-AAATAAAATCG
* * *
905999 GAGTTGGAGTATCCCCGATTGTGAAAAATT-AGTGTTTTAGAAATAAAACCG
1 GGGTTGGAGTATCCCCGATTATGAAAAATTGA-TGTTTTAGAAATAAAATCG
906050 GGGTTGGAGTATCCCCGATTATGAAAAATTGA
1 GGGTTGGAGTATCCCCGATTATGAAAAATTGA
906082 GAAACTTAAC
Statistics
Matches: 229, Mismatches: 45, Indels: 38
0.73 0.14 0.12
Matches are distributed among these distances:
50 5 0.02
51 97 0.42
52 71 0.31
53 21 0.09
54 9 0.04
55 15 0.07
56 5 0.02
57 4 0.02
58 2 0.01
ACGTcount: A:0.32, C:0.12, G:0.27, T:0.29
Consensus pattern (51 bp):
GGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAATCG
Found at i:905821 original size:28 final size:28
Alignment explanation
Indices: 905789--905859 Score: 92
Period size: 27 Copynumber: 2.6 Consensus size: 28
905779 ATAAAATCGA
905789 GGGTTGGAGTATCCCCTCGA-AAATAACG
1 GGGTTGGAGTATCCCC-CGATAAATAACG
* *
905817 GGGTTGGAGTAT-CCCCGATGATTAACG
1 GGGTTGGAGTATCCCCCGATAAATAACG
*
905844 GGGTTTGAGTATCCCC
1 GGGTTGGAGTATCCCC
905860 GATTGTGAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
26 3 0.08
27 20 0.53
28 15 0.39
ACGTcount: A:0.23, C:0.21, G:0.31, T:0.25
Consensus pattern (28 bp):
GGGTTGGAGTATCCCCCGATAAATAACG
Found at i:905983 original size:51 final size:51
Alignment explanation
Indices: 905842--906080 Score: 309
Period size: 51 Copynumber: 4.6 Consensus size: 51
905832 CGATGATTAA
* * *
905842 CGGGGTTTGAGTATCCCCGATTGTGAAAAATTGGTGTTTTTGGAAATAAAAT
1 CGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTG-TTTTGAAAATAAAAC
* * ** *
905894 CAGAGTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTTGAAAATAAAAC
1 CGGGGTTGGAGTATCCCCGATT-GTGAAAAATTGGTGTTTTGAAAATAAAAC
* * * *
905946 CGGGGTTGGAGTGTCCCCGATTGTGGAAAATTGGTGTTTCGAAAATAAAAT
1 CGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTGAAAATAAAAC
* *
905997 CGGAGTTGGAGTATCCCCGATTGTGAAAAATTAGTGTTTT-AGAAATAAAAC
1 CGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTGA-AAATAAAAC
*
906048 CGGGGTTGGAGTATCCCCGATTATGAAAAATTG
1 CGGGGTTGGAGTATCCCCGATTGTGAAAAATTG
906081 AGAAACTTAA
Statistics
Matches: 161, Mismatches: 24, Indels: 5
0.85 0.13 0.03
Matches are distributed among these distances:
50 1 0.01
51 98 0.61
52 51 0.32
53 11 0.07
ACGTcount: A:0.32, C:0.12, G:0.27, T:0.30
Consensus pattern (51 bp):
CGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTGAAAATAAAAC
Found at i:906056 original size:102 final size:104
Alignment explanation
Indices: 905842--906080 Score: 349
Period size: 102 Copynumber: 2.3 Consensus size: 104
905832 CGATGATTAA
* * *
905842 CGGGGTTTGAGTATCCCCGATTGTGAAAAATTGGTGTTTTTGGAAATAAAATCAGAGTTGGAGTA
1 CGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTCGAAAATAAAATCAGAGTTGGAGTA
* *
905907 TCCCCGATTAAAGGAAAATTGGTGTTTTGAAAATAAAAC
66 TCCCCGATTAAAGAAAAATTAGTGTTTTGAAAATAAAAC
* * *
905946 CGGGGTTGGAGTGTCCCCGATTGTGGAAAATTGGTG-TTTCGAAAATAAAATCGGAGTTGGAGTA
1 CGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTCGAAAATAAAATCAGAGTTGGAGTA
**
906010 TCCCCGATT-GTGAAAAATTAGTGTTTT-AGAAATAAAAC
66 TCCCCGATTAAAGAAAAATTAGTGTTTTGA-AAATAAAAC
*
906048 CGGGGTTGGAGTATCCCCGATTATGAAAAATTG
1 CGGGGTTGGAGTATCCCCGATTGTGAAAAATTG
906081 AGAAACTTAA
Statistics
Matches: 121, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
101 1 0.01
102 53 0.44
103 34 0.28
104 33 0.27
ACGTcount: A:0.32, C:0.12, G:0.27, T:0.30
Consensus pattern (104 bp):
CGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTCGAAAATAAAATCAGAGTTGGAGTA
TCCCCGATTAAAGAAAAATTAGTGTTTTGAAAATAAAAC
Found at i:908206 original size:32 final size:32
Alignment explanation
Indices: 908170--908234 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 32
908160 AGCGATATAC
908170 TGTATCGATACAAAACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
* * *
908202 TGTATCGATATAACACTTATGTATTGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
908234 T
1 T
908235 TACTGTTTGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.38
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:909039 original size:42 final size:43
Alignment explanation
Indices: 909008--909109 Score: 136
Period size: 42 Copynumber: 2.4 Consensus size: 43
908998 CTCATTTTTC
* *
909008 GAGGACAAAGGAAAAAGGGAAATAAAATACGTC-CTGCTCTCT
1 GAGGACAAAAGAAAAAGGAAAATAAAATACGTCTCTGCTCTCT
* *
909050 GAGGACAAAAGAAAAAGGAAAATAAAATGCGTCT-TGCTCTTT
1 GAGGACAAAAGAAAAAGGAAAATAAAATACGTCTCTGCTCTCT
*
909092 GAAGACAAAAGAGAAAAG
1 GAGGACAAAAGA-AAAAG
909110 AAGGGAAGAA
Statistics
Matches: 53, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
42 48 0.91
43 5 0.09
ACGTcount: A:0.48, C:0.13, G:0.24, T:0.16
Consensus pattern (43 bp):
GAGGACAAAAGAAAAAGGAAAATAAAATACGTCTCTGCTCTCT
Found at i:909355 original size:60 final size:61
Alignment explanation
Indices: 909126--909379 Score: 310
Period size: 61 Copynumber: 4.3 Consensus size: 61
909116 AGAAAGTGTG
* * **
909126 TCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGTG
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAGAAGGCA
* * * *
909187 TCCTGCCCTTTGAGGACTGGAAGGTGCCACCAACTCGTGTGGGCTTTGCAAAA-AGAAAGCA
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTTG-AAAAGAGAAGGCA
* *
909248 TCCTGCTCTTTGAAGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT-AAAAGGAGAAGGCA
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAA-GAGAAGGCA
** *
909309 TCCTGCTCTTTGAGGACTG-AAAGTGCCACCGGCTTGTGTGGGCTTT----A-A-AAGGCA
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAGAAGGCA
909363 TCCTGCTCTTTGAGGAC
1 TCCTGCTCTTTGAGGAC
909380 AAAAAGGCAA
Statistics
Matches: 173, Mismatches: 17, Indels: 13
0.85 0.08 0.06
Matches are distributed among these distances:
54 23 0.13
55 1 0.01
57 1 0.01
59 4 0.02
60 25 0.14
61 115 0.66
62 4 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (61 bp):
TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAGAAGGCA
Found at i:909658 original size:55 final size:55
Alignment explanation
Indices: 909399--909941 Score: 534
Period size: 55 Copynumber: 9.5 Consensus size: 55
909389 AAAGGAGAGA
* * * *
909399 GCGTCTTGCTCTTTGAGGA-TTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAG
1 GCGTCCTGCTCTTTGAGGACTGA-AAAATGCCACCAACTTGTGTGGGCTTT-----GA-AAG
*
909460 GCGTCCTGCTCTTTGAGGACTCAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGAAAAG
1 GCGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTT----G-AAAG
* * *
909520 GCGTCCTGCTTTTTGAGGACTGGAAAATGCCACCCACTTGTGTGGGCTTTGAAAAG
1 GCGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTG-AAAG
* * *
909576 AAAAAGCATCCTACTCTTTGAGGACTGAAAAATGCCACCAACTTGTTTGGGCTTTGAAAG
1 -----GCGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAG
* **
909636 GCGTCCTGCTTTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAG
1 GCGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAG
* * * *
909691 GCATCTTGCTCTTTGAGGACTGGAAAATGCCACTAACTTGTGTGGGCTTT-AAGAG
1 GCGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAA-AG
* * *
909746 GTGTCCTACTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGGGCTTTAAAAAGAAAAG
1 GCGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTT-----G-AAAG
* * * * * * *
909807 GTGTCCTGCTCTTTGAAGA-TTAGAAAATGCCACCAACTCGTGTAGGTTTTAAAAG
1 GCGTCCTGCTCTTTGAGGACTGA-AAAATGCCACCAACTTGTGTGGGCTTTGAAAG
* **
909862 GAGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAG
1 GCGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAG
* *
909917 GCGTCTTGCTCTTTGTGGACTGAAA
1 GCGTCCTGCTCTTTGAGGACTGAAA
909942 GGGTGAAAGG
Statistics
Matches: 409, Mismatches: 56, Indels: 40
0.81 0.11 0.08
Matches are distributed among these distances:
54 2 0.00
55 206 0.50
56 8 0.02
60 58 0.14
61 131 0.32
62 4 0.01
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.28
Consensus pattern (55 bp):
GCGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAG
Found at i:909803 original size:226 final size:228
Alignment explanation
Indices: 909399--909941 Score: 698
Period size: 226 Copynumber: 2.4 Consensus size: 228
909389 AAAGGAGAGA
* * *
909399 GCGTCTTGCTCTTTGAGGATTAGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCG
1 GCGTCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT-----GA-AAGGCG
* * *
909463 TCCTGCTCTTTGAGGACTCAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGCGTCCTG
59 TCTTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTT-AAAG--AAGGCGTCCTA
* * * * *
909528 CTTTTTGAGGACTGGAAAATGCCACCCACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTACTCT
121 CTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGGGCTTTAAAAAGAAAAAGCATCCTACTCT
* * * * *
909593 TTGAGGACTGA-AAAATGCCACCAACTTGTTTGGGCTTTGAAAG
186 TTGAAGA-TGAGAAAATGCCACCAACTCGTGTAGGCTTTAAAAG
* *
909636 GCGTCCTGCTTTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCATCTTGCT
1 GCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCTTGCT
* * *
909701 CTTTGAGGACTGGAAAATGCCACTAACTTGTGTGGGCTTT-AAG-AGGTGTCCTACTCTTTGAGG
66 CTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTAAAGAAGGCGTCCTACTCTTTGAGG
* ** * *
909764 ACTGAAAAATGCCACCAACCTGTGTGGGCTTTAAAAAGAAAAGGTGTCCTGCTCTTTGAAGATTA
131 ACTGAAAAATGCCACCAACCTGTGTGGGCTTTAAAAAGAAAAAGCATCCTACTCTTTGAAGATGA
*
909829 GAAAATGCCACCAACTCGTGTAGGTTTTAAAAG
196 GAAAATGCCACCAACTCGTGTAGGCTTTAAAAG
*
909862 GAGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCTTGCT
1 GCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCTTGCT
*
909927 CTTTGTGGACTGAAA
66 CTTTGAGGACTGAAA
909942 GGGTGAAAGG
Statistics
Matches: 272, Mismatches: 32, Indels: 15
0.85 0.10 0.05
Matches are distributed among these distances:
225 2 0.01
226 172 0.63
229 3 0.01
231 48 0.18
232 2 0.01
236 3 0.01
237 42 0.15
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.28
Consensus pattern (228 bp):
GCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCTTGCT
CTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTAAAGAAGGCGTCCTACTCTTTGAGG
ACTGAAAAATGCCACCAACCTGTGTGGGCTTTAAAAAGAAAAAGCATCCTACTCTTTGAAGATGA
GAAAATGCCACCAACTCGTGTAGGCTTTAAAAG
Found at i:909840 original size:171 final size:171
Alignment explanation
Indices: 909426--909941 Score: 577
Period size: 171 Copynumber: 3.0 Consensus size: 171
909416 GATTAGGAAG
* *
909426 TGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCTGCTCTTTGAGGACTCA-AAAATGC
1 TGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAGGCGTCCTGCTCTTTGAGGA-TTAGAAAATGC
* * *
909490 CACCAACTTGTGTGGGCTTTGAAAGAAAAGGCGTCCTGCTTTTTGAGGACTGGAAAATGCCACCC
64 CACCAACTTGTGTGGGCTTT----G-AAAGGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCA
* *
909555 ACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTACTCTTTGAGGACTGAAAAA
124 ACTTGTGTGGGCTTT--AAAG---AGGCGTCCTACTCTTTGAGGACTGAAAAA
* * * *
909608 TGCCACCAACTTGTTTGGGCTTT----G-AAAGGCGTCCTGCTTTTTGAGGACT-GAAAGGTGCC
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGATTAGAAA-ATGCC
* *
909667 ACCAACTTGTGTGGGCTTTGAAAGGCATCTTGCTCTTTGAGGACTGGAAAATGCCACTAACTTGT
65 ACCAACTTGTGTGGGCTTTGAAAGGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGT
*
909732 GTGGGCTTT-AAGAGGTGTCCTACTCTTTGAGGACTGAAAAA
130 GTGGGCTTTAAAGAGGCGTCCTACTCTTTGAGGACTGAAAAA
* * *
909773 TGCCACCAACCTGTGTGGGCTTTAAAAAGAAAAGGTGTCCTGCTCTTTGAAGATTAGAAAATGCC
1 TGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGCGTCCTGCTCTTTGAGGATTAGAAAATGCC
* * * * *
909838 ACCAACTCGTGTAGGTTTTAAAAGG-AGTCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTT
65 ACCAACTTGTGTGGGCTTTGAAAGGCA-TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTT
* * * *
909901 GTGTGGGCTTTGAA-AGGCGTCTTGCTCTTTGTGGACTGAAA
128 GTGTGGGCTTTAAAGAGGCGTCCTACTCTTTGAGGACTGAAA
909942 GGGTGAAAGG
Statistics
Matches: 290, Mismatches: 32, Indels: 35
0.81 0.09 0.10
Matches are distributed among these distances:
165 47 0.16
168 3 0.01
170 6 0.02
171 157 0.54
172 7 0.02
175 3 0.01
176 44 0.15
177 1 0.00
182 22 0.08
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (171 bp):
TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGATTAGAAAATGCCA
CCAACTTGTGTGGGCTTTGAAAGGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTG
TGGGCTTTAAAGAGGCGTCCTACTCTTTGAGGACTGAAAAA
Done.