Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold39
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4724573
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 178835 characters in sequence are not A, C, G, or T
File 10 of 27
Found at i:1518142 original size:395 final size:394
Alignment explanation
Indices: 1517480--1518254 Score: 1176
Period size: 395 Copynumber: 2.0 Consensus size: 394
1517470 TTGGTGTCGT
*
1517480 AAGAAAAGCTTTTCTTTTCACCGTTTTCGATAAAATCAAAGTTTGTCTCTTAAATACGACAAACA
1 AAGAAAAGCTTTTCTTTGCACCGTTTTCGATAAAATCAAAGTTTGTCTCTTAAATACGACAAACA
* * * *
1517545 TGAATACTCAAACTAATCCCCATTCTTTTAGGATTAGGCACCATAACGTAGTCTCCTCATTAGGA
66 TGAATACTCAAACTAATCCCCATTCTTTTAAGATTAGACACCATAACATAGTCTCCTCATTAGAA
* * * * *
1517610 TACATCATATTGACGCTTTGGTTTCGCAGGAAAGGCTTTTTTCCTACCAATTTTTGTAAAGTCTA
131 TACATCATAATGACGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTCTAAAGTCTA
* * *
1517675 AGTTCGTGACTCAAATGAGACAAACATGGATTCTTGTAATGATATTCATTCTTTTGGTCATTAGA
196 AGTTCGTGACTCAAATGAGACAAACATGGATCCTAGTAAAGATATTCATTCTTTTGGTCATTAGA
* *
1517740 CACTATAAACACATTCTCCTCAATAGGATATATGATATTGATGATTTTCTTTTGCATGAAAATCT
261 CACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTATTTTGCATGAAAATCT
* *
1517805 TTTCTTTGCCCTATTTTCCTTACAATCAAAGTTCATCCCTTAAATAAGGCAAGCCACGTTTGGGG
326 TTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCCACGTTTGGGG
1517870 TTGC
391 TTGC
* * *
1517874 AAGAAAAGCTTTT-TTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACA
1 AAGAAAAGCTTTTCTTTGCACCGTTTTCGATAAAATCAAAGTTTGTCTCTTAAATACGACAAACA
* ** * *
1517938 TGAATACTCATACTAATCCCTGTTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTCATTTG
66 TGAATACTCAAACTAATCCCCATTCTTTT-AAGATTAGACACCAT-AACATAGTCTCCTCATTAG
* * *
1518003 AATAGATCATAATGATGCTTTGGTTTTGCAAGAAAGGCATTTTTCCCACCAATTTTTCTAAAGTC
129 AATACATCATAATGACGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTCTAAAGTC
* * *
1518068 TAAGTTCGTGCCTCAAATGAGACAAACATGGATCCTAGTAAAGATCTTCATTCATTTT-GTGATT
194 TAAGTTCGTGACTCAAATGAGACAAACATGGATCCTAGTAAAGATATTCATTC-TTTTGGTCATT
** ** *
1518132 AGGTACTATAAACACATTCTGTTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGAAAA
258 AGACACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTATTTTGCATGAAAA
*
1518197 TCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCC
323 TCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCC
1518255 TCGATTCTTG
Statistics
Matches: 341, Mismatches: 37, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
393 73 0.21
394 26 0.08
395 238 0.70
396 4 0.01
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (394 bp):
AAGAAAAGCTTTTCTTTGCACCGTTTTCGATAAAATCAAAGTTTGTCTCTTAAATACGACAAACA
TGAATACTCAAACTAATCCCCATTCTTTTAAGATTAGACACCATAACATAGTCTCCTCATTAGAA
TACATCATAATGACGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTCTAAAGTCTA
AGTTCGTGACTCAAATGAGACAAACATGGATCCTAGTAAAGATATTCATTCTTTTGGTCATTAGA
CACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTATTTTGCATGAAAATCT
TTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCCACGTTTGGGG
TTGC
Found at i:1520716 original size:395 final size:395
Alignment explanation
Indices: 1520053--1520828 Score: 1198
Period size: 395 Copynumber: 2.0 Consensus size: 395
1520043 TTGGTGTCGT
1520053 AAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTGTCTCTTAAATACGACAAACA
1 AAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTGTCTCTTAAATACGACAAACA
* * * *
1520118 TGAATACTCAAACTAATCCCCATTCTTTTCAGGATTAGGCACCATAACGTAGTCTCCTCATTAGG
66 TGAATACTCAAACTAATCCCCATTCTTTTCAAGATTAGACACCATAACATAGTCTCCTCATTAGA
* * * * *
1520183 ATACATCATATTGACGCTTTGGTTTCGCAGGAAAGGCTTTTTTCCTACCAATTTTTGTAAAGTCT
131 ATACATCATAATGACGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTCTAAAGTCT
* * *
1520248 AAGTTCGTGACTCAAATGAGACAAACATGGATTCTTGTAATGATATTCATTCTTTTGGTCATTAG
196 AAGTTCGTGACTCAAATGAGACAAACATGGATCCTAGTAAAGATATTCATTCTTTTGGTCATTAG
*
1520313 ACACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATC
261 ACACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTATTTTGCATGAAAATC
*
1520378 TTTTCTTTGCCCTATTTTCCTTACAATCAAAGTTCATCAC-TTAAATAAGGCAAGCCACGTTTGG
326 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC-CTTTAAATAAGGCAAGCCACGTTTGG
1520442 GGTTGC
390 GGTTGC
* * * *
1520448 AAGAAAAGCTTTT-TTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACA
1 AAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTGTCTCTTAAATACGACAAACA
* ** * *
1520512 TGAATACTCATACTAATCCCTGTTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTCATTTG
66 TGAATACTCAAACTAATCCCCATTCTTTTCAAGATTAGACACCAT-AACATAGTCTCCTCATTAG
* * *
1520577 AATAGATCATAATGATGCTTTGGTTTTGCAAGAAAGGCATTTTTCCCACCAATTTTTCTAAAGTC
130 AATACATCATAATGACGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTCTAAAGTC
* * * *
1520642 TAAGTTCGTGCCTCAAATGAGACAAACATGGATCCTAGTAAAGATCTTCGTTCATTTT-GTGATT
195 TAAGTTCGTGACTCAAATGAGACAAACATGGATCCTAGTAAAGATATTCATTC-TTTTGGTCATT
** * *
1520706 AGGTACTATAAACACATTCTGCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGAAAA
259 AGACACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTATTTTGCATGAAAA
1520771 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCC
324 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCC
1520829 TCGATTCTTG
Statistics
Matches: 344, Mismatches: 34, Indels: 6
0.90 0.09 0.02
Matches are distributed among these distances:
394 88 0.26
395 252 0.73
396 4 0.01
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (395 bp):
AAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTGTCTCTTAAATACGACAAACA
TGAATACTCAAACTAATCCCCATTCTTTTCAAGATTAGACACCATAACATAGTCTCCTCATTAGA
ATACATCATAATGACGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTCTAAAGTCT
AAGTTCGTGACTCAAATGAGACAAACATGGATCCTAGTAAAGATATTCATTCTTTTGGTCATTAG
ACACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTATTTTGCATGAAAATC
TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCCACGTTTGGG
GTTGC
Found at i:1526148 original size:158 final size:157
Alignment explanation
Indices: 1525986--1527684 Score: 486
Period size: 159 Copynumber: 10.8 Consensus size: 157
1525976 GTTGCAGTCT
* *
1525986 CCATTCTTTTCATGATTTGG-ATGCCAAAACACATTCCCTTCATTAGGATGCATATATTGATGCT
1 CCATTCTTTTCAGGATTTGGCA-GCCAAAACACATTCCCTTCATTAGGATACATATATTGATGCT
* * * *
1526050 TTGGTGTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTGTCTCTTAAAT
65 TTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCATTTTCGATAAAATCAAAGTTCGTCTCTTAAAT
1526115 ATGACAAACATGAATACTGATAATAATCC
130 ATGACAAACATGAATACT-ATAATAATCC
* * ** * *
1526144 CCATTCTTTTCAGGATTAGGCA-CCATAACGTAGTCTCC-TCATTAGGATACATCATATTGACGC
1 CCATTCTTTTCAGGATTTGGCAGCCAAAACACATTC-CCTTCATTAGGATACAT-ATATTGATGC
* * * * * ** *
1526207 TTTGATTTCGCAAGAAAGGC-TTT-TTTCTTACCAATTTTCG-TAAAGTCTAAGTTCGTGACTCA
64 TTTGGTTTCGCAAGAAAAGCTTTTCTTTC-CACC-ATTTTCGATAAAATCAAAGTTCGTCTCTTA
* * * *
1526269 AATGA-GACAAACATGGATTCTAGTAATGATCT
127 AAT-ATGACAAACATGAATACTA-TAATAATCC
** * * * *
1526301 TTATTCATTT-GGTGATTTGGCAG-TATAAACACATTCTCCTT-ATTAGGATGA-ACGATATTGA
1 CCATTCTTTTCAG-GATTTGGCAGCCA-AAACACATTC-CCTTCATTAGGAT-ACA-TATATTGA
* ** * * * * * * * ** **
1526362 TGATTTTCTTTTGCATGGAAATCTTCTCTTAGCC-CTATTTTCCTTAAAATCAAAGTTCAAC-CT
61 TGCTTTGGTTTCGCAAGAAAAGCTTTTCTT-TCCACCATTTTCGATAAAATCAAAGTTCGTCTC-
* * * * * *
1526425 TTAAATATGGCAAGCATCG-ATTCTCTTAATAGTCT
124 TTAAATATGACAAACAT-GAATACT-ATAATAATCC
* * * * * *
1526460 CCATTCTTTTCAAGA-TTGAGAAGCAAAAACACATTCCTTTCATTAGGATTCATGACATTGATGC
1 CCATTCTTTTCAGGATTTG-GCAGCCAAAACACATTCCCTTCATTAGGATACAT-ATATTGATGC
* * * * * * *
1526524 TTTGGTGTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTTGACAGAATCAAAGTTTGTCTCTTAAA
64 TTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCATTTTCGATAAAATCAAAGTTCGTCTCTTAAA
* * * *
1526589 TAAGACAAACACGAACACTTATACTAATCC
129 TATGACAAACATGAATAC-TATAATAATCC
* * * * * ** * *
1526619 CCATTCATTTCAGGATTAGGCA-TCATAAACATAGTCTTTTTATTAGGATACATTATATTGAAGC
1 CCATTCTTTTCAGGATTTGGCAGCCA-AAACACATTCCCTTCATTAGGATACA-TATATTGATGC
* * * * * *
1526683 TTTGGTTTCGCAAGAAAGGCTTTTTTTTCACCCCAATTTTTG-TAAAGTCTAAGTTCGTGC-CTC
64 TTTGGTTTCGCAAGAAAAGCTTTTCTTTC-CACC-ATTTTCGATAAAATCAAAGTTCGT-CTCT-
* * * * * *
1526746 T-AATGA-GATACATATGGATTCTAGTAA-AGATCT
125 TAAAT-ATGACAAACATGAATACTA-TAATA-ATCC
*** ** *** * * * * *
1526779 TTTTTCATTTT-TTGAAAAGGTA-CTATAAACA-GTTCTCC-TC-TTCAAGATAAATGATATTGA
1 CCATTC-TTTTCAGGATTTGGCAGCCA-AAACACATTC-CCTTCATT-AGGATACAT-ATATTGA
* ** * * * * * *** * * *
1526839 TGATTTTATTTTGCATGGAAATCTTTTCTTTACGTTATTTTC-CTTAAATCAAAGTTCATC-CTT
61 TGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCATTTTCGATAAAATCAAAGTTCGTCTC-T
* * * * * *
1526902 TAAACA-AACCAAGCTTCG-ATTCTCATAAT-AGCC
125 TAAATATGA-CAAACAT-GAATACT-ATAATAATCC
* * * * * * * * * ** *
1526935 CTCATTCTTTTTAAGATTGGGAATCGAACACGCATTCACTTTTTTAGGATACATGAAATTGATGC
1 C-CATTCTTTTCAGGATTTGGCAGCCAAAACACATTCCCTTCATTAGGATACAT-ATATTGATGC
* * **
1527000 TTTGGTGTCGTAAGAAAAGCTTTTCTTTCCACCATTTTCGATAAAATCAAAGTTTATCTCTTAAA
64 TTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCATTTTCGATAAAATCAAAGTTCGTCTCTTAAA
* * *
1527065 AACGACAAACATGAATACTCATACTAATCC
129 TATGACAAACATGAATACT-ATAATAATCC
* * ** * *
1527095 TCATTCTTTTCAGGATTAGGCA-CCACAAATGCAGT-CTTCTCATTAGGATACATCATATTGATG
1 CCATTCTTTTCAGGATTTGGCAGCCA-AAACACATTCCCT-TCATTAGGATACAT-ATATTGATG
* * * ** * * ** *
1527158 C-TTGGTTTCACAGGAAAGGC-TTT-TTTCCTACCAATTTTCG-TAAGGTCTAAGTTTGTGACTC
63 CTTTGGTTTCGCAAGAAAAGCTTTTCTTTCC-ACC-ATTTTCGATAAAATCAAAGTTCGTCTCTT
* * * *
1527219 AAATGA-GACAAACATGGATTCTAGTAATGATCT
126 AAAT-ATGACAAACATGAATACTA-TAATAATCC
** * * * *
1527252 TTATTCATTT-GGTGATTTGGCA-CTATAAACACATTCTCC-TCATTAGGATGA-ACGATATTGA
1 CCATTCTTTTCAG-GATTTGGCAGCCA-AAACACATTC-CCTTCATTAGGAT-ACA-TATATTGA
* ** * * * * * ** * ** *
1527313 TGATTTTCTTTTGCATGGAAATCTTCTCTTAGGC-CTATTTTCCTTAAAATCAAAGTTCATC-CT
61 TGCTTTGGTTTCGCAAGAAAAGCTTTTCTT-TCCACCATTTTCGATAAAATCAAAGTTCGTCTC-
* * * * *
1527376 TTAAATATGGA-AAGCATCG-ATTCTCTTAATAGTCT
124 TTAAATAT-GACAAACAT-GAATACT-ATAATAATCC
* * * * * *
1527411 CCATTCTTTTCAAGA-TTGAGAAGCAAAAACACATTCCTTTCATTAGGATGCATGACATTGATGC
1 CCATTCTTTTCAGGATTTG-GCAGCCAAAACACATTCCCTTCATTAGGATACAT-ATATTGATGC
* * * * * * * *
1527475 TTTGGTGTCGTAAGAAAAGCTTTTCTTTCCACCTTTTTTGACAGAATCAAAGTTTGGCTCTTAAA
64 TTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCATTTTCGATAAAATCAAAGTTCGTCTCTTAAA
* * * * *
1527540 TAAGTCAAACACGAACACTTATACTAATCC
129 TATGACAAACATGAATAC-TATAATAATCC
* * * * * *
1527570 CCATTCATTTCAGGATTAGGCA-TCATAAACATAGT--CTTC---A--ATACATTATATTGAAGC
1 CCATTCTTTTCAGGATTTGGCAGCCA-AAACACATTCCCTTCATTAGGATACA-TATATTGATGC
* * * * *
1527627 TTTGGTTTCGCAAGAAAGGCTTTTTTTTCACACCAATTTTTG-TAAAGTCTAAGTTCGT
64 TTTGGTTTCGCAAGAAAAGCTTTTCTTTC-CACC-ATTTTCGATAAAATCAAAGTTCGT
1527685 GCCTCTAATG
Statistics
Matches: 1084, Mismatches: 357, Indels: 205
0.66 0.22 0.12
Matches are distributed among these distances:
152 37 0.03
153 15 0.01
154 7 0.01
156 24 0.02
157 216 0.20
158 218 0.20
159 480 0.44
160 73 0.07
161 14 0.01
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.37
Consensus pattern (157 bp):
CCATTCTTTTCAGGATTTGGCAGCCAAAACACATTCCCTTCATTAGGATACATATATTGATGCTT
TGGTTTCGCAAGAAAAGCTTTTCTTTCCACCATTTTCGATAAAATCAAAGTTCGTCTCTTAAATA
TGACAAACATGAATACTATAATAATCC
Found at i:1526447 original size:474 final size:472
Alignment explanation
Indices: 1525588--1528307 Score: 3270
Period size: 474 Copynumber: 5.7 Consensus size: 472
1525578 TTGGGGTGGC
* * * *
1525588 AAGAAAAGCTTTT-TTTGCACCATTTTTGATAGAAA-CAAAGTTTGTCTCTTAAATATGACAAAC
1 AAGAAAAGCTTTTCTTTCCACCGTTTTCGATA-AAATCAAAGTTTGTCTCTTAAATAAGACAAAC
** * * * *
1525651 ATGAATACTCATACTAATCCCTGTTCTTTTCAAGACTAGACACCATAGACATAGTCTTCTCATTT
65 ATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATA-ACATAGTCTTCTCATTA
* * * * * * *
1525716 GAATAGATCATAATGATGCTTTGGTTTTGCAAGAAAGGCATTTTTCCCACCAATTTT-TAAAGTC
129 GGATACATCATATTGAAGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCTACCAATTTTGTAAAGTC
* * * * *
1525780 TAAGTTCGTGCCTCAAATGAGACAAACATGGATCCTAGTAAAGATCTTCATTCATTTTGTGATTA
194 TAAGTTCGTGACTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTGGTGATTA
* * * *
1525845 GGTACTATAAACACATTCTACTCACTAGGATAAATGATATTGATGATTTTATTTTGCATGAAAAT
259 GGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGGAAAT
*
1525910 CTTTTCCTTACCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCCTCGATTCT
324 CTTTT-CTTACCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCATCGATTCT
*** * * *
1525975 TGTTGCAGTCTCCATTCTTTTCATGATTTGGATGCCAAAACACATTCCCTTCATTAGGATGCAT-
388 T-TAATAGTCTCCATTCTTTTCAAGATTTGGATGCAAAAACACATTCCCTTCATTAGGATACATG
*
1526039 ATATTGATGCTTTGGTGTCGT
452 AAATTGATGCTTTGGTGTCGT
*
1526060 AAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTGTCTCTTAAATATGACAAACA
1 AAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* * * *
1526125 TGAATACTGATAATAATCCCCATTCTTTTCAGGATTAGGCACCATAACGTAGTCTCCTCATTAGG
66 TGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAACATAGTCTTCTCATTAGG
* * *
1526190 ATACATCATATTGACGCTTTGATTTCGCAAGAAAGGCTTTTTTCTTACCAATTTTCGTAAAGTCT
131 ATACATCATATTGAAGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCTACCAATTTT-GTAAAGTCT
*
1526255 AAGTTCGTGACTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTGGTGATTTG
195 AAGTTCGTGACTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTGGTGATTAG
* * * * *
1526320 GCAGTATAAACACATTCTCCTTATTAGGATGAACGATATTGATGATTTTCTTTTGCATGGAAATC
260 GCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGGAAATC
* * *
1526385 TTCTCTTAGCCCTATTTTCCTTAAAATCAAAGTTCAACCTTTAAATATGGCAAGCATCGATTCTC
325 TTTTCTTA-CCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCATCGATTCT-
* * *
1526450 TTAATAGTCTCCATTCTTTTCAAGA-TTGAGAAGCAAAAACACATTCCTTTCATTAGGATTCATG
388 TTAATAGTCTCCATTCTTTTCAAGATTTG-GATGCAAAAACACATTCCCTTCATTAGGATACATG
*
1526514 ACATTGATGCTTTGGTGTCGT
452 AAATTGATGCTTTGGTGTCGT
* * *
1526535 AAGAAAAGCTTTTCTTTCCACCGTTTTTGACAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
1 AAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* * * * * * *
1526600 CGAACACTTATACTAATCCCCATTCATTTCAGGATTAGGCATCATAAACATAGTCTTTTTATTAG
66 TGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCAT-AACATAGTCTTCTCATTAG
* *
1526665 GATACATTATATTGAAGCTTTGGTTTCGCAAGAAAGGCTTTTTTTTCAC-CCCAATTTTTGTAAA
130 GATACATCATATTGAAGCTTTGGTTTCGCAAGAAAGGC--TTTTTTC-CTACCAA-TTTTGTAAA
* * * * * * * **
1526729 GTCTAAGTTCGTGCCTCTAATGAGATACATATGGATTCTAGTAAAGATCTTTTTTCATTTTTTGA
191 GTCTAAGTTCGTGACTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTGGTGA
** * * *
1526794 AAAGGTACTATAAACA-GTTCTCCTC-TTCAAGATAAATGATATTGATGATTTTATTTTGCATGG
256 TTAGGCACTATAAACACATTCTCCTCATT-AGGATAAATGATATTGATGATTTTATTTTGCATGG
** * ** *
1526857 AAATCTTTTCTTTACGTTATTTTCCTT-AAATCAAAGTTCATCCTTTAAACAAACCAAGCTTCGA
320 AAATCTTTTC-TTACCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCATCGA
* * * * * * * * **
1526921 TTCTCATAATAG-CCCTCATTCTTTTTAAGATTGGGAAT-CGAACACGCATTCACTTTTTTAGGA
384 TTCT-TTAATAGTCTC-CATTCTTTTCAAGATTTGG-ATGCAAAAACACATTCCCTTCATTAGGA
1526984 TACATGAAATTGATGCTTTGGTGTCGT
446 TACATGAAATTGATGCTTTGGTGTCGT
* *
1527011 AAGAAAAGCTTTTCTTTCCACCATTTTCGATAAAATCAAAGTTTATCTCTTAAA-AACGACAAAC
1 AAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTGTCTCTTAAATAA-GACAAAC
* *
1527075 ATGAATACTCATACTAATCCTCATTCTTTTCAGGATTAGGCACCACAA-ATGCAGTCTTCTCATT
65 ATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAACAT--AGTCTTCTCATT
* * * *
1527139 AGGATACATCATATTGATGC-TTGGTTTCACAGGAAAGGCTTTTTTCCTACCAATTTTCGTAAGG
128 AGGATACATCATATTGAAGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCTACCAATTTT-GTAAAG
*
1527203 TCTAAGTTTGTGACTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTGGTGAT
192 TCTAAGTTCGTGACTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTGGTGAT
* * * *
1527268 TTGGCACTATAAACACATTCTCCTCATTAGGATGAACGATATTGATGATTTTCTTTTGCATGGAA
257 TAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGGAA
* * * *
1527333 ATCTTCTCTTAGGCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATATGGAAAGCATCGATT
322 ATCTTTTCTTA-CCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCATCGATT
* * *
1527398 CTCTTAATAGTCTCCATTCTTTTCAAGA-TTGAGAAGCAAAAACACATTCCTTTCATTAGGATGC
386 CT-TTAATAGTCTCCATTCTTTTCAAGATTTG-GATGCAAAAACACATTCCCTTCATTAGGATAC
*
1527462 ATGACATTGATGCTTTGGTGTCGT
449 ATGAAATTGATGCTTTGGTGTCGT
* * * * * *
1527486 AAGAAAAGCTTTTCTTTCCACCTTTTTTGACAGAATCAAAGTTTGGCTCTTAAATAAGTCAAACA
1 AAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* * * * *
1527551 CGAACACTTATACTAATCCCCATTCATTTCAGGATTAGGCATCATAAACATAGTC-T-TC---A-
66 TGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCAT-AACATAGTCTTCTCATTAG
*
1527610 -ATACATTATATTGAAGCTTTGGTTTCGCAAGAAAGGCTTTTTTTTCAC-ACCAATTTTTGTAAA
130 GATACATCATATTGAAGCTTTGGTTTCGCAAGAAAGGC--TTTTTTC-CTACCAA-TTTTGTAAA
* * * * * * * **
1527673 GTCTAAGTTCGTGCCTCTAATGAGATACATATAGATTCTAGTAAAT-ATCTTT-TTCCCTTTTTT
191 GTCTAAGTTCGTGACTCAAATGAGACAAACATGGATTCTAGT-AATGATCTTTATT-CATTTGGT
* * *
1527736 GAATAGGTACTATAAACA-ATTCTCCTC-TTCGGGATAAATGATATTGATGATTTTATTTTGCAT
254 GATTAGGCACTATAAACACATTCTCCTCATT-AGGATAAATGATATTGATGATTTTATTTTGCAT
** * ** *
1527799 GGAAATCTTTTCTTTACGTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAACAAACCAAGCTTC
318 GGAAATCTTTTC-TTACCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCATC
* * * * * * * **
1527864 GATTCTCATAATAGCCCCCATTCCTTTT-AAGATTGGGAAT-CGAACACACATTCACTTTTTTAG
382 GATTCT-TTAATAGTCTCCATT-CTTTTCAAGATTTGG-ATGCAAAAACACATTCCCTTCATTAG
1527927 GATACATGAAATTGATGCTTTGGTGTCGT
444 GATACATGAAATTGATGCTTTGGTGTCGT
* * *
1527956 AAGAAAAGCTTTTCTTTTCACCGTTTTCGATAAAATCAAAGTTTGTCTCTTAAATACGACAAAAA
1 AAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* * * *
1528021 TGAATACCTCAAGAGTAATCCCCATTCTTTTCAGGATTAGGCACCATAACGTAGTCTCCTCATTA
66 TGAATA-CTC-ATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAACATAGTCTTCTCATTA
* *
1528086 GGATACATCATATTGACGCTTTGGTTTCGCAGGAAAGGC--TTTTCCTACCAATTTTGTAAAGTC
129 GGATACATCATATTGAAGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCTACCAATTTTGTAAAGTC
* * * * *
1528149 TAAGTTCGTGACTCAAATGAGACAAACATGGATTCTTGTAATGATATTCATTCTTTTGGTCATTA
194 TAAGTTCGTGACTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTGGTGATTA
* * * *
1528214 GACACTATAAACACATTCTCCTCAATAGGATATATGATATTGATGATTTTATTTTGCATGAAAAT
259 GGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGGAAAT
* *
1528279 CTTTTCTTTGCCCTATTTTCCTTACAATC
324 CTTTTC-TTACCCTATTTTCCTTAAAATC
1528308 TGATGACAAC
Statistics
Matches: 1910, Mismatches: 279, Indels: 116
0.83 0.12 0.05
Matches are distributed among these distances:
468 15 0.01
469 19 0.01
470 220 0.12
471 98 0.05
472 126 0.07
473 247 0.13
474 374 0.20
475 343 0.18
476 281 0.15
477 63 0.03
478 120 0.06
479 4 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (472 bp):
AAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACA
TGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAACATAGTCTTCTCATTAGG
ATACATCATATTGAAGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCTACCAATTTTGTAAAGTCTA
AGTTCGTGACTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTGGTGATTAGG
CACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGGAAATCT
TTTCTTACCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCATCGATTCTTTA
ATAGTCTCCATTCTTTTCAAGATTTGGATGCAAAAACACATTCCCTTCATTAGGATACATGAAAT
TGATGCTTTGGTGTCGT
Found at i:1533340 original size:42 final size:42
Alignment explanation
Indices: 1533285--1533403 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
1533275 TTCTTCTCTC
* *
1533285 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
1533327 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
1533369 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
1533404 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:1533344 original size:12 final size:11
Alignment explanation
Indices: 1533318--1533393 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
1533308 TCTATTATCT
*
1533318 CTCCTGTCTCTC
1 CTCCTATCTC-C
1533330 CTCCTATCATCC
1 CTCCTATC-TCC
1533342 CTCCTATCT--
1 CTCCTATCTCC
*
1533351 CTACTATCT--
1 CTCCTATCTCC
*
1533360 CTCCTGTCTCTC
1 CTCCTATCTC-C
1533372 CTCCTATCATCC
1 CTCCTATC-TCC
*
1533384 CTCCTCTCTC
1 CTCCTATCTC
1533394 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:1533345 original size:24 final size:24
Alignment explanation
Indices: 1533309--1533394 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
1533299 CCTCCTCTCT
* *
1533309 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
1533333 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
1533354 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
1533375 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
1533395 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:1533369 original size:18 final size:18
Alignment explanation
Indices: 1533300--1533370 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
1533290 CCTGTCATCC
* *
1533300 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
1533318 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
1533340 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
1533360 CTCCTGTCTCT
1 CTCCTGTCTCT
1533371 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:1536026 original size:160 final size:157
Alignment explanation
Indices: 1535383--1537934 Score: 509
Period size: 159 Copynumber: 16.1 Consensus size: 157
1535373 AGTTAATCCT
* * * * *
1535383 TTAAATAAGGCAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGAGAAGCAAAAAC
1 TTAAAT-AGACAA-CATCGATTCTCGTAATAGTCTCCATTCTTTTTAAGATTGGGAAGCAAAAAC
* **
1535448 ACATTCCCTTCATTAGGATGCATGATATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCCA
64 ACATTCCCTTCATTAGGATACATGATATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCA
* * * * **
1535513 TCGTTTGTGATAGAATCAAAGTTTGTTTC
129 CCATTTTTGATAGAATCAAAGTTCGTCGC
* * * * * * * * * *
1535542 TTAAATACGACACACA-AGAATACT-GATAATAATCCCCATTTTTTTTCAGGATTAGGTACCATA
1 TTAAATA-GACA-ACATCG-ATTCTCG-TAATAGTCTCCATTCTTTTT-AAGATTGGGAAGCAAA
* * ** * * * *
1535605 AACATAGTCCTCTT-ATTAGGATACACAAT-TTGATGCTTTAGTTTCGCAAGAAAGGC-TTTCTT
61 AACACATTCC-CTTCATTAGGATACATGATATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTT
* *
1535667 CCCCCCAATTTTT-ATA-AAGTCTAAA-TTCG-CGCC
125 TCCACC-ATTTTTGATAGAA-TC-AAAGTTCGTCG-C
* * * ** * * * * *
1535700 TCAAATGAGACAAACATGGATTCTAGTAAT-GATCTTTATTC-ATTTAGTGATTTGGCA-CTATA
1 TTAAAT-AGAC-AACATCGATTCTCGTAATAG-TCTCCATTCTTTTTA-AGATTGGGAAGC-AAA
* * ** * * * *
1535762 AACACATTCTCC-TCATTAGGATAAATGATATTGATGATTTTCTTTTACAATGGAAATCTTTTCT
61 AACACATTC-CCTTCATTAGGATACATGATATTGATGCTTTGGTGTCACAA-GAAAAGCTTTTCT
* ** *** * * **
1535826 TAGCC-TTATTTTCCTTAAAATCAAAGTTCATCTT
124 T-TCCACCATTTTTGATAGAATCAAAGTTCGTCGC
*
1535860 TTAAATATGGCAATCATCGATTCTCGTAATAGTCTCCATTCTTTTTAAGATTGGGAAGCAAAAAC
1 TTAAATA-GACAA-CATCGATTCTCGTAATAGTCTCCATTCTTTTTAAGATTGGGAAGCAAAAAC
* *
1535925 ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCATAAGAAAAGCTTTTCTTTTCC
64 ACATTCCCTTCATTAGGATACATGATATTGATGCTTTGGTGTCACAAGAAAAGCTTTTC-TTTCC
1535990 ACCATTTTTGATAGAATCAAAGCTT-GTCGC
128 ACCATTTTTGATAGAATCAAAG-TTCGTCGC
* * * * * * * * **
1536020 TTAAATACGACAACCA-AGAATACTCATACTAATCCCCATTCTTTTTAGGATT-AGACAGCGTAA
1 TTAAATA-GACAA-CATCG-ATTCTCGTAATAGTCTCCATTCTTTTTAAGATTGGGA-AGCAAAA
* * * * * * * *
1536083 ACATAGTCTTCTT-ATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTTT
62 ACACATTC-CCTTCATTAGGATACATGATATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTT
*
1536147 CACACCAATTTTTG-TA-AAGTCTAAGTTCGT-GCC
126 C-CACC-ATTTTTGATAGAA-TCAAAGTTCGTCG-C
* * * * *** * * * * *
1536180 TCT-AATGAGATACATATAGA-TCTAGTAAATA-TCTTTTTTCATTTTT-TGAATAGGTA-CTAT
1 T-TAAAT-AGACA-ACATCGATTCTCGT-AATAGTCTCCATTC-TTTTTAAGATTGGGAAGC-AA
* * ** * ** * * *
1536240 AAACA-ATTCTCC-TC-TTCAGGATAAATGATATTGATGATTTTATTTTGCATGGAAATCTTTTC
60 AAACACATTC-CCTTCATT-AGGATACATGATATTGATGCTTTGGTGTCACAAGAAAAGCTTTTC
* ** *** * *
1536302 TTTACATTATTTTCCTTAAAATCAAAGTTCATC-C
123 TTTCCACCATTTTTGATAGAATCAAAGTTCGTCGC
* * * * * * * * *
1536336 TTTAAACAAACGAAGCTTCGATTCTCATAATAGCCCCCATTCCTTTTAAGATTGGGAATCAAACA
1 -TTAAATAGAC-AA-CATCGATTCTCGTAATAGTCTCCATTCTTTTTAAGATTGGGAAGCAAAAA
* * ** * * * * *
1536401 CACATTCACTTTATTAGGATATGTGAAATGGATTCTTTGGTGTCATAAGAAAAGTTTTTCTTTCC
63 CACATTCCCTTCATTAGGATACATGATATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCC
* * * ** *
1536466 ACCGTTTTCGATAAAATCAAAGTTTATCTC
128 ACCATTTTTGATAGAATCAAAGTTCGTCGC
* * * * * * * * * * *
1536496 TTAAA-ACGACAAACAT-GAATACTCATACTAATC-CTCGTTCTTTTCAGGATTAGGCACCACAA
1 TTAAATA-GAC-AACATCG-ATTCTCGTAATAGTCTC-CATTCTTTTTAAGATTGGGAAGCAAAA
* * * * * * *
1536558 ACGCAGT-CTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCACAGGAAAGGC-TTT-TTT
62 ACACATTCCCT-TCATTAGGATACATGATATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTT
* *
1536620 CCTACCAATTTTCG-TA-AAGTCTAAGTTCGT-GAC
126 CC-ACC-ATTTTTGATAGAA-TCAAAGTTCGTCG-C
* * * ** * * * *
1536653 TCAAATGAGACAAACATGGATTCTAGTAAT-GATCTTTATTC--TTTAGGTCATTAGGCA-CTAT
1 TTAAAT-AGAC-AACATCGATTCTCGTAATAG-TCTCCATTCTTTTTAAG--ATTGGGAAGC-AA
* * * * ** * ** * *
1536714 AAACACATTCTCC-ACAATAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCT
60 AAACACATTC-CCTTCATTAGGATACATGATATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCT
* *** * * *
1536778 TTGCC-CTATTTTCCTTAAAATCAAAGTTCATCCC
124 TT-CCACCATTTTTGATAGAATCAAAGTTCGTCGC
* * * * * * * * * *
1536812 GTAAATAAGGCAAGCCTCGATTCTTGTAACAGTC-CCAATTCTTTTCATGATTTGGATGCCAAAA
1 TTAAAT-AGACAA-CATCGATTCTCGTAATAGTCTCC-ATTCTTTTTAAGATTGGGAAGCAAAAA
* * * * * *
1536876 CACATTCCCCTCATTAGGGTAAATGACATTGATGCTTTGG-GGCTACAAGAAAAGCTTTTCTTTT
63 CACATTCCCTTCATTAGGATACATGATATTGATGCTTTGGTGTC-ACAAGAAAAGCTTTTCTTTC
* * *
1536940 CACCGTTTTTGATAGAATCAAAGTTTGTCTC
127 CACCATTTTTGATAGAATCAAAGTTCGTCGC
* * * * * * * * * * *
1536971 TTAAATATGACAAACAT-GAATACTCATACTAATCCCCGTTCTTTTCAAGATTAGGCACCATAAA
1 TTAAATA-GAC-AACATCG-ATTCTCGTAATAGTCTCCATTCTTTTTAAGATTGGGAAGCAAAAA
* * * * * ** * * ** * *
1537035 CATAGT-CTTCTCATTCA-AATACATCATAAAGATGCCTTGGTTTTGCAAGAAAGGCTTTTC-TC
63 CACATTCCCT-TCATT-AGGATACATGATATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTT
* *
1537097 CCACCAATTTTTGA-A-AAGTCTATGTTCGT-GCC
126 CCACC-ATTTTTGATAGAA-TCAAAGTTCGTCG-C
* * * * ** ** * * *
1537129 TCAAATGAGACAAACATAGATTCTAGTAA-AGATCTTCATTAATTTTGTGATTAGGTA-CTATAA
1 TTAAAT-AGAC-AACATCGATTCTCGTAATAG-TCTCCATTCTTTTTAAGATTGGGAAGC-AAAA
* * * ** * ** ** * * *
1537192 ACACATTCTGC-TCATTAGGATAAATGATATTGATGATTTTATTTTGCTTGGAAATCTTTTATTT
62 ACACATTC-CCTTCATTAGGATACATGATATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTT
* * * **
1537256 --ATCCTATTTTTCATAAAATCAAAGTTCATCTT
126 CCA-CC-ATTTTTGATAGAATCAAAGTTCGTCGC
* * * *
1537288 TTAAATAAGGCAAGCATCGATTCTCATAACT-GTCTCCATT-TGTTTCAAGATTGAGAAGCAAAA
1 TTAAAT-AGACAA-CATCGATTCTCGTAA-TAGTCTCCATTCT-TTTTAAGATTGGGAAGCAAAA
* * * * **
1537351 ACACATTGCTTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTC
62 ACACATTCCCTTCATTAGGATACATGATATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTC
* * * * *
1537416 TACCGTTTTTGACAGAATCAAAGTTTGTCTC
127 CACCATTTTTGATAGAATCAAAGTTCGTCGC
* * * * * * ** * * *
1537447 TTAAATACGACAAACA-AGAATAC-CGATAATAATCCCCATTTTTTTTAGGATTACGTACCATAA
1 TTAAATA-GAC-AACATCG-ATTCTCG-TAATAGTCTCCATTCTTTTTAAGATTGGGAAGCAAAA
** * * * * * * * * *
1537510 ACGTAGTCTTCTT-ATTAGGATACACGACATTGATGCTTTGGTTTCGCATGAAAGGC-TTTCTTC
62 ACACATTC-CCTTCATTAGGATACATGATATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTT
* * *
1537573 CCCCCAATTTTT-ATA-AAGTCTAAGTTCAT-GCC
126 CCACC-ATTTTTGATAGAA-TCAAAGTTCGTCG-C
* * * * **** * * * *
1537605 TCAAATGAGACAAACATGGATTCTAGTAAT-GATCTTCATTCTTTTGGTCACTAGGCA-CTATAA
1 TTAAAT-AGAC-AACATCGATTCTCGTAATAG-TCTCCATTCTTTTTAAGATTGGGAAGC-AAAA
* * ** * * *** * *
1537668 ACACATTCTCC-TCAATAGGATAAATGATATTGATAATTT-TTTTTGTATGAAAATCTTTTCTTT
62 ACACATTC-CCTTCATTAGGATACATGATATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTT
* *** * *
1537731 GCC-CTATTTTCCTTAAAATCAAAGTTCATC-C
126 -CCACCATTTTTGATAGAATCAAAGTTCGTCGC
* * ** ** * * * * *
1537762 TTTAAATAAGGCAAGCCTCGATTCTTATAGCAGTCTCCATTCTTTTCATGATTTGGATGCCAAAA
1 -TTAAAT-AGACAA-CATCGATTCTCGTAATAGTCTCCATTCTTTTTAAGATTGGGAAGCAAAAA
** * * * **
1537827 CACATTCCCTTCATTAGGGCAAATGACATTGATGCTTTGGGGTTGCAAGAAAAGCTTTTCTTTCC
63 CACATTCCCTTCATTAGGATACATGATATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCC
** * **
1537892 ACTGTTTTTGATAGAATCAAAGTTTGTTTC
128 ACCATTTTTGATAGAATCAAAGTTCGTCGC
1537922 TTAAATATGACAA
1 TTAAATA-GACAA
1537935 ACATGTAGAC
Statistics
Matches: 1692, Mismatches: 539, Indels: 324
0.66 0.21 0.13
Matches are distributed among these distances:
156 25 0.01
157 122 0.07
158 568 0.34
159 648 0.38
160 291 0.17
161 38 0.02
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (157 bp):
TTAAATAGACAACATCGATTCTCGTAATAGTCTCCATTCTTTTTAAGATTGGGAAGCAAAAACAC
ATTCCCTTCATTAGGATACATGATATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACC
ATTTTTGATAGAATCAAAGTTCGTCGC
Found at i:1537155 original size:476 final size:475
Alignment explanation
Indices: 1535021--1545509 Score: 12489
Period size: 476 Copynumber: 22.1 Consensus size: 475
1535011 GTTTTCATCA
* * * ** *
1535021 AAAAGCCTTT-TTTGCACCGTTTTTGATAGAACCAACTTTTGTCTCTTAAATATGACAAACATGA
1 AAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGA
* * * * *
1535085 ATACTCATACTAATCCCTGTTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTCATTTGAAT
66 ATACTCATACTAATCCCCGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGAT
* * * *
1535150 AGATCATAATGATGCTTTGGTTTTGCAAGAAAGGCTTTTCTCCCACCAATTTTTGTAAAGTCTAA
131 ACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAA
* * * *
1535215 GTTCGTGCCTCAAAAGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGT
196 GTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGATTAGGC
* * * *
1535280 GCTATAAACACATTCTGCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGAAAATATT
261 ACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGGAAATCTT
* * *
1535345 TTCTTTACCTTATTTTTCTTAAAATCAAAGTTAATCCTTTAAATAAGGCAAGCATCGATTCTCAT
326 TTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCATCGATTCTCAT
* * *
1535410 AACAGTCTCCATTCTTTTCAAGA-TTGAGAAGCAAAAACACATTCCCTTCATTAGGATGCATGAT
391 AATAGTCTCCATTCTTTTCAAGATTTG-GAAGCAAAAACACATTCCCTTCATTAGGATACATGAC
1535474 ATTGATGCTTTGGTGTCGTAAG
455 ATTGATGCTTTGGTGTCG-AAG
* * * * *
1535496 AAAAGCTTTTCTTTCCATCGTTTGTGATAGAATCAAAGTTTGTTTCTTAAATACGACACACAAGA
1 AAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGA
* * * * * * *
1535561 ATACTGATAATAATCCCCATTTTTTTTCAGGATTAGGTACCATAAACATAGTCCTCTTATTAGGA
66 ATACTCATACTAATCCCC-GTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGA
* * * *
1535626 TACA-CA-ATTTGATGCTTTAGTTTCGCAAGAAAGGCTTTCTTCCCCCCAATTTTTATAAAGTCT
130 TACATCATA-TTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCT
* * * *
1535689 AAATTCGCGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTAGTGATTTG
194 AAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGATTAG
* *
1535754 GCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTACAATGGAAAT
259 GCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGC-ATGGAAAT
* * * *
1535819 CTTTTC-TTAGCCTTATTTTCCTTAAAATCAAAGTTCATCTTTTAAATATGGCAATCATCGATTC
323 CTTTTCTTTA-CCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCATCGATTC
* * *
1535883 TCGTAATAGTCTCCATTCTTTTTAAGATTGGGAAGCAAAAACACATTCCCTTCATTAGGATACAT
387 TCATAATAGTCTCCATTCTTTTCAAGATTTGGAAGCAAAAACACATTCCCTTCATTAGGATACAT
*
1535948 GACATTGATGCTTTGGTGTCATAAG
452 GACATTGATGCTTTGGTGTC-GAAG
* * * * *
1535973 AAAAGCTTTTCTTTTCCACCATTTTTGATAGAATCAAAGCTTGTCGCTTAAATACGACAACCAAG
1 AAAAGCTTTTC-TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATG
* * * * * *
1536038 AATACTCATACTAATCCCCATTCTTTTTAGGATTAGACAGCGTAAACATAGTCTTCTTATTAGGA
65 AATACTCATACTAATCCCCGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGA
*
1536103 TACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTTTCACACCAATTTTTGTAAAGTC
130 TACATCATATTGATGCTTTGGTTTCGCAAGAAAGGC--TTTTTTCCCACCAATTTTTGTAAAGTC
* * * * * * * *
1536168 TAAGTTCGTGCCTCTAATGAGATACATATAGA-TCTAGTAAAT-ATCTTTTTTCATTTTTTGAAT
193 TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGT-AATGATCTTTATTCATTTTGTGATT
*
1536231 AGGTACTATAAACA-ATTCTCCTC-TTCAGGATAAATGATATTGATGATTTTATTTTGCATGGAA
257 AGGCACTATAAACACATTCTCCTCATT-AGGATAAATGATATTGATGATTTTATTTTGCATGGAA
** * * *
1536294 ATCTTTTCTTTACATTATTTTCCTTAAAATCAAAGTTCATCCTTTAAACAA-ACGAAGCTTCGAT
321 ATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGC-AAGCATCGAT
* * * * * * *
1536358 TCTCATAATAGCCCCCATTCCTTTT-AAGATTGGGAATCAAACACACATTCACTTTATTAGGATA
385 TCTCATAATAGTCTCCATT-CTTTTCAAGATTTGGAAGCAAAAACACATTCCCTTCATTAGGATA
** * * * *
1536422 TGTGAAATGGATTCTTTGGTGTCATAAG
449 CATGACATTGATGCTTTGGTGTC-GAAG
* * * *
1536450 AAAAGTTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTATCTCTTAAA-ACGACAAACATGA
1 AAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGA
* * **
1536514 ATACTCATACTAATCCTCGTTCTTTTCAGGATTAGGCACCACAAACGCAGTCTTCTCATTAGGAT
66 ATACTCATACTAATCCCCGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGAT
* * * *
1536579 ACATCATATTGATGCTTTGGTTTCACAGGAAAGGCTTTTTTCCTACCAATTTTCGTAAAGTCTAA
131 ACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAA
* * *
1536644 GTTCGTGACTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTC-TTTAGGTCATTAGG
196 GTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTT-TGTGATTAGG
* * * *
1536708 CACTATAAACACATTCTCCACAATAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCT
260 CACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGGAAATCT
* ** * **
1536773 TTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCGTAAATAAGGCAAGCCTCGATTCTTG
325 TTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCATCGATTCTCA
* * * * * * *
1536838 TAACAGTC-CCAATTCTTTTCATGATTTGGATGCCAAAACACATTCCCCTCATTAGGGTAAATGA
390 TAATAGTCTCC-ATTCTTTTCAAGATTTGGAAGCAAAAACACATTCCCTTCATTAGGATACATGA
*
1536902 CATTGATGCTTTGGGGCTAC-AAG
454 CATTGATGCTTTGGTG-T-CGAAG
* *
1536925 AAAAGCTTTTCTTTTCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATGA
1 AAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGA
* *
1536990 ATACTCATACTAATCCCCGTTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTCA-AA
66 ATACTCATACTAATCCCCGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATT-AGGA
** * * * *
1537054 TACATCATAAAGATGCCTTGGTTTTGCAAGAAAGGCTTTTCTCCCACCAATTTTTGAAAAGTCTA
130 TACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTA
* * * * *
1537119 TGTTCGTGCCTCAAATGAGACAAACATAGATTCTAGTAAAGATCTTCATTAATTTTGTGATTAGG
195 AGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGATTAGG
* * *
1537184 TACTATAAACACATTCTGCTCATTAGGATAAATGATATTGATGATTTTATTTTGCTTGGAAATCT
260 CACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGGAAATCT
* * * * *
1537249 TTTATTTATCCTATTTTTCATAAAATCAAAGTTCATCTTTTAAATAAGGCAAGCATCGATTCTCA
325 TTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCATCGATTCTCA
* * *
1537314 TAACT-GTCTCCATT-TGTTTCAAGA-TTGAGAAGCAAAAACACATTGCTTTCATTAGGATGCAT
390 TAA-TAGTCTCCATTCT-TTTCAAGATTTG-GAAGCAAAAACACATTCCCTTCATTAGGATACAT
1537376 GACATTGATGCTTTGGTGTCGTAAG
452 GACATTGATGCTTTGGTGTCG-AAG
* * *
1537401 AAAAGCTTTTCTTTCTACCGTTTTTGACAGAATCAAAGTTTGTCTCTTAAATACGACAAACAAGA
1 AAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGA
* * * * * * * *
1537466 ATAC-CGATAATAATCCCCATTTTTTTTAGGATTACGTACCATAAACGTAGTCTTCTTATTAGGA
66 ATACTC-ATACTAATCCCCGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGA
* * * * *
1537530 TACA-CGACATTGATGCTTTGGTTTCGCATGAAAGGCTTTCTTCCCCCCAATTTTTATAAAGTCT
130 TACATC-ATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCT
* * * *
1537594 AAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTC-TTTTGGTCACTA
194 AAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTT-GTGATTA
* * * *
1537658 GGCACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATAATTTT-TTTTGTATGAAAAT
258 GGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGGAAAT
* *
1537722 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCCTCGATTCT
323 CTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCATCGATTCT
* ** * * * ** *
1537787 TATAGCAGTCTCCATTCTTTTCATGATTTGGATGCCAAAACACATTCCCTTCATTAGGGCAAATG
388 CATAATAGTCTCCATTCTTTTCAAGATTTGGAAGCAAAAACACATTCCCTTCATTAGGATACATG
* *
1537852 ACATTGATGCTTTGGGGTTGCAAG
453 ACATTGATGCTTTGGTGTCG-AAG
* * *
1537876 AAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTTTCTTAAATATGACAAACATGT
1 AAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATG-
* *** * *
1537941 AGACAC-CATA--AA-CATAG-TCTTCTC---ATT------C---AA-ATA-------CA-T--C
65 A-ATACTCATACTAATCCCCGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGG
*
1537978 ATA-AT------GATGCTTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCT
129 ATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCT
* * * * * * *
1538036 AAGTTTGTACCTCAAATGGGACAAACAAGGATTCCAGTAAAGATCTTCATTCATTTTGTGATTAG
194 AAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGATTAG
* *
1538101 GTACTATAAACACATTCTACTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGGAAATC
259 GCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGGAAATC
* * * *
1538166 TTTTCTTTACCCTATTTTTCTTCAAATCAAAGTTTATCCTTTAAATAAGGCAAGCATTGATTCTC
324 TTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCATCGATTCTC
* * * * * *
1538231 ATAACAGTCTCAATTCTTCTCAAGA-TTGAGAAGCAAAAACACATTCCCCTCATTAGGATGCGTG
389 ATAATAGTCTCCATTCTTTTCAAGATTTG-GAAGCAAAAACACATTCCCTTCATTAGGATACATG
* * *
1538295 ACCTTGACGCTTTGGTGCCGTAAG
453 ACATTGATGCTTTGGTGTCG-AAG
* * *
1538319 AAAAGCTTTTCTTTCCACCGTTTTTGACAGAATGAAGGTTTGTCTCTTAAATACGACAAAC-TAG
1 AAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACAT-G
* * * ** * *
1538383 AATATTGATATTAATCCATGTT-TTCTTCAGGATTAGGTACCATAAACATAGTCTTCTTATTAGG
65 AATACTCATACTAATCCCCGTTCTT-TTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGG
* * * *
1538447 ATACA-CGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCC-CCTAACTTTTATAAAGT
129 ATACATC-ATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACC-AATTTTTGTAAAGT
* * *
1538510 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTGATGATCTTTATACATTTGGTGATT
192 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGATT
* * * * * *
1538575 TGGCACTAGAAACACATTCTCCTCATTAGGATGAATGATATTGATGATTTTCTTTTGTAGGGAAA
257 AGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGGAAA
* * * *
1538640 TCTTTTC-TTAGCCCTACTTTCCTTAAAACCAAAGTTCATCTTTTAAATATGGCAAGCATCGATT
322 TCTTTTCTTTA-CCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCATCGATT
* * * * * *
1538704 CTCGTAATAGTCTCCATT-TTTTTAACATTGGGAAGCGAAAACACATTCCCTTCATTAGGCTACA
386 CTCATAATAGTCTCCATTCTTTTCAAGATTTGGAAGCAAAAACACATTCCCTTCATTAGGATACA
*
1538768 TGACATTGATGCTTTGATGTCGTAAG
451 TGACATTGATGCTTTGGTGTCG-AAG
*
1538794 AAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGA
1 AAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGA
* * * * * * *
1538859 AAACTTATACTAATCCCCGTTCTTTTTAGGATAAGGCAGCATAAACTTAGTCTTCTTATTAGGAT
66 ATACTCATACTAATCCCCGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGAT
* *
1538924 ACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTTTCACACCCATTTTTGTAAAGTCT
131 ACATCATATTGATGCTTTGGTTTCGCAAGAAAGGC--TTTTTTCCCACCAATTTTTGTAAAGTCT
* * * *
1538989 AAGTTCGTGCCTCAAATAAGACAAACATGGATTCTAGTAAAGATCTTTGTTCATTTTCTGATTAG
194 AAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGATTAG
* * * * * *
1539054 GTACTACAAACACAATCTGCTCATTAGGATAAACGATATTGATGATATTATTTTGCATGGAAATC
259 GCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGGAAATC
* *
1539119 TTTTCTTTACCCTATTTTTCTTAAAATCAAAGTTCATCCTTTAAATAAGGCGAGCATCGATTCTC
324 TTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCATCGATTCTC
* * * * *
1539184 ATAACAGTCTCCA-TCTTTTCAAGA-TTGAGAAGCAAAAACATATTCCTTTCATTAGGATGCAAG
389 ATAATAGTCTCCATTCTTTTCAAGATTTG-GAAGCAAAAACACATTCCCTTCATTAGGATACATG
1539247 ACATTGATGCTTTGGTGTCGTAAG
453 ACATTGATGCTTTGGTGTCG-AAG
* * *
1539271 AAAAGCTTTTCTTTCCACCATTTTTGACAGAATCAAAGTTTGTCTCTTAAATACGACAAACAAGA
1 AAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGA
* * ** * * *
1539336 ATACTGATAATAAT-CCTTTTTTTTTCAGGATTTA-GTACCATAAACGTAGTCTTC-CTATTAGG
66 ATACTCATACTAATCCCCGTTCTTTTCAGGA-TTAGGCACCATAAACATAGTCTTCTC-ATTAGG
* * * * *
1539398 ATACA-CGACATTGATGCTTTGGTTTCACAAGGAAGGCTTTCTTCGCC-CCAATTTTTATAAAGT
129 ATACATC-ATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTC-CCACCAATTTTTGTAAAGT
* * * *
1539461 CTAAATTCGCGGCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTAGTGATT
192 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGATT
* * * *
1539526 TGGCACTATAAACACATTCTCCTCATTAGGATAAATGTTATTGATGATTTTCTTTTACAATGGAA
257 AGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGC-ATGGAA
* * *
1539591 ATCTTTTC-TTAGCCTTATTTTCCTTAAAATCAAAGTTCATCTTTTAAATATGGCAAGCATCGAT
321 ATCTTTTCTTTA-CCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCATCGAT
* * * * *
1539655 TCTCGTTATAGTCTCCATTCTTTTTAAGATTGGGAAGAAAAAACACATTCCCTTCATTAGGATAC
385 TCTCATAATAGTCTCCATTCTTTTCAAGATTTGGAAGCAAAAACACATTCCCTTCATTAGGATAC
1539720 ATGACATTGATGCTTTGGTGTCGTAAG
450 ATGACATTGATGCTTTGGTGTCG-AAG
** * *
1539747 AAAAGCTTTTCTTTTCCACTATTTTTGATAGAATTAAAGTTTGTCTCTTAAATACGACAAACAAG
1 AAAAGCTTTTC-TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATG
* * * * *
1539812 AATACTCATACTAATCCCCATTCCTTTT-AGGATTAGACAGCATAAACATAGTCTTGTTATTAGG
65 AATACTCATACTAATCCCCGTT-CTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGG
* **
1539876 ATACATCGTATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTTCATACCAATTTTTGTAAAGTC
129 ATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTTTTCCCACCAATTTTTGTAAAGTC
* * * * * * * *
1539941 TAAGTTCGTGCCTCTAATGAGATACATATGGATTCTAGTAAAGATCTTTTTTCATTTTTTGAATA
193 TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGATTA
* *
1540006 GGTACTATAAGCA-ATTCTCCTC-TTCAGGATAAATGATATTGATGATTTTATTTTGCATGGAAA
258 GGCACTATAAACACATTCTCCTCATT-AGGATAAATGATATTGATGATTTTATTTTGCATGGAAA
*** * *
1540069 TCTTTTCTTTATGTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAACTAA-CCAAGCTTCGATT
322 TCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAA-TAAGGCAAGCATCGATT
* * * * * * ** *
1540133 CTCATAATAGCCCCCATTCCTTTT-AAGATTGGGAATCAAACACACATTCACTTTTTTAGAATAC
386 CTCATAATAGTCTCCATT-CTTTTCAAGATTTGGAAGCAAAAACACATTCCCTTCATTAGGATAC
* *
1540197 ATGAAATTGATGCTTTGGTGTCATAAG
450 ATGACATTGATGCTTTGGTGTC-GAAG
* * * * *
1540224 AAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTATCTTTTAAAAACGACAAACATGA
1 AAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGA
* * * * ***
1540289 ATACTCATACTAATCCTCATTCTTTTCACGATTAGGCACCACAAATGCAGTCTTCTCATTAGGAT
66 ATACTCATACTAATCCCCGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGAT
* * * * * *
1540354 ACATCATATTGATGCTTTGGTTTCG-TAGCAAAGGCCTTTTTCCTACCAATTTTCGTAATGTATA
131 ACATCATATTGATGCTTTGGTTTCGCAAG-AAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTA
* * *
1540418 AGTTCGTGACTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTGGTGATTTGG
195 AGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGATTAGG
* ** * *
1540483 CAGTATAAACACATTCTCCTCATTAGGATGCACGATATTGATGATTTTCTTTTGCATGGAAATCT
260 CACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGGAAATCT
* *
1540548 TCTC-TTAGCCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATATGGCAAGCATCGATTCTC
325 TTTCTTTA-CCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCATCGATTCTC
* * * *
1540612 TTAATAGTCTCCATTCTTTTCAATA-TTGAGAAGCAAAAACACATTCCTTTCATTAGGATGCATG
389 ATAATAGTCTCCATTCTTTTCAAGATTTG-GAAGCAAAAACACATTCCCTTCATTAGGATACATG
1540676 ACATTGATGCTTTGGTGTCGTAAG
453 ACATTGATGCTTTGGTGTCG-AAG
*
1540700 AAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATGA
1 AAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGA
* * *
1540765 ATACTCAAACTAATCCCCGTTCTTTTCAGGATTAGGCACCAT-AACGTAGTCTCCTCATTAGGAT
66 ATACTCATACTAATCCCCGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGAT
* * * * * * *
1540829 ACGTCATATTGACGCTTTGGTTTCGTAGGAAAGGCTTTTTTCCTACCAATTTTTTTGAAGTCTAA
131 ACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAA
* * * * * * *
1540894 GTTCATGACTCAAATGAGACAAACATGGATTCTAGTAGTGATATTCATTC-TTTTGGTCATTAGA
196 GTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTT-GTGATTAGG
* *
1540958 CACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCT
260 CACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGGAAATCT
** * ** *
1541023 TTTCTTTACGTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAACAAACCAAGCTTCGATTCTCA
325 TTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCATCGATTCTCA
* * * * * * * * *
1541088 TAATAGCCCCCATTCCTTTT-AAGATTGGGAATCGAACACACATTCACTTTATTAGGATACGTGA
390 TAATAGTCTCCATT-CTTTTCAAGATTTGGAAGCAAAAACACATTCCCTTCATTAGGATACATGA
* * * *
1541152 AATGGATTCTTTGGTGTCATAAG
454 CATTGATGCTTTGGTGTC-GAAG
* * * * * *
1541175 AAAAGTTTTTCTTTCCACTGTTTTCGATAAAATCAAAGTTTATCTCTTAAAAACGACAAACATGA
1 AAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGA
* * * * ** *
1541240 ATACTCATACTAATCCTCATTCTTTTCAGGATTAGGCGCCACAAACGCAGTCTTCTCATTATGAT
66 ATACTCATACTAATCCCCGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGAT
* * * ** *
1541305 ACATCATGTTGACGCTTTGGTTTCGCAGGAAAGGCTTTTTTCTTACCAATTTTCGTAAAGTCTAA
131 ACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAA
* * *
1541370 GTTCGTGACTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTGGTGATTTGGC
196 GTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGATTAGGC
* * *
1541435 ACTATAAACACATTCTCCTCATTAGGATGAACGATATTGATGATTTTCTTTTGCATGGAAATCTT
261 ACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGGAAATCTT
* * * * *
1541500 CTC-TTAGCCCTATTTTCTTTAAAATCAAAGTTCAACCTTTAAATATGGCAAGCATCGATTCTCT
326 TTCTTTA-CCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCATCGATTCTCA
* *
1541564 TAATAGTCTCCATTCTTTTCAAGA-TTGAGAAGCAAAAACACATTCCTTTCATTAGGATTCATGA
390 TAATAGTCTCCATTCTTTTCAAGATTTG-GAAGCAAAAACACATTCCCTTCATTAGGATACATGA
1541628 CATTGATGCTTTGGTGTCGTAAG
454 CATTGATGCTTTGGTGTCG-AAG
* * *
1541651 AAAAGCTTTTCTTTCCACCGTTTTTGACAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGA
1 AAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGA
* * * * * *
1541716 ACACTTATACTAATCCCCATTCATTTCAGGATTAGGCATCATAAACATAGTCTTCTTATTAGGAT
66 ATACTCATACTAATCCCCGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGAT
* *
1541781 ACATTATATTGAAGCTTTGGTTTCGCAAGAAAGGCTTTTTTTTCACC-CCAATTTTTGTAAAGTC
131 ACATCATATTGATGCTTTGGTTTCGCAAGAAAGGC--TTTTTTC-CCACCAATTTTTGTAAAGTC
* * * * * * * *
1541845 TAAGTTCGTGCCTCTAATGAGATACATATGGATTCTAGTAAAGATCTTTTTTCATTTTTTGAATA
193 TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGATTA
* * *
1541910 GGTACTATAAACA-GTTCTCCTC-TTCAAGATAAATGATATTGATGATTTTATTTTGCATGGAAA
258 GGCACTATAAACACATTCTCCTCATT-AGGATAAATGATATTGATGATTTTATTTTGCATGGAAA
** * ** *
1541973 TCTTTTCTTTACGTTATTTTCCTT-AAATCAAAGTTCATCCTTTAAACAAACCAAGCTTCGATTC
322 TCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCATCGATTC
* * * * * * * * **
1542037 TCATAATAG-CCCTCATTCTTTTTAAGATTGGGAATCGAACACGCATTCACTTTTTTAGGATACA
387 TCATAATAGTCTC-CATTCTTTTCAAGATTTGGAAGCAAAAACACATTCCCTTCATTAGGATACA
*
1542101 TGAAATTGATGCTTTGGTGTCGTAAG
451 TGACATTGATGCTTTGGTGTCG-AAG
* * * * *
1542127 AAAAGCTTTTCTTTCCACCATTTTCGATAAAATCAAAGTTTATCTCTTAAAAACGACAAACATGA
1 AAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGA
* * * ***
1542192 ATACTCATACTAATCCTCATTCTTTTCAGGATTAGGCACCACAAATGCAGTCTTCTCATTAGGAT
66 ATACTCATACTAATCCCCGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGAT
* * * * *
1542257 ACATCATATTGATGCTTTGGTTTCACAGGAAAGGCTTTTTTCCTACCAATTTTCGTAAGGTCTAA
131 ACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAA
* * * *
1542322 GTTTGTGACTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTGGTGATTTGGC
196 GTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGATTAGGC
* * *
1542387 ACTATAAACACATTCTCCTCATTAGGATGAACGATATTGATGATTTTCTTTTGCATGGAAATCTT
261 ACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGGAAATCTT
* * * * *
1542452 CTC-TTAGGCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATATGGAAAGCATCGATTCTCT
326 TTCTTTA-CCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCATCGATTCTCA
* *
1542516 TAATAGTCTCCATTCTTTTCAAGA-TTGAGAAGCAAAAACACATTCCTTTCATTAGGATGCATGA
390 TAATAGTCTCCATTCTTTTCAAGATTTG-GAAGCAAAAACACATTCCCTTCATTAGGATACATGA
1542580 CATTGATGCTTTGGTGTCGTAAG
454 CATTGATGCTTTGGTGTCG-AAG
* * * * * *
1542603 AAAAGCTTTTCTTTCCACCTTTTTTGACAGAATCAAAGTTTGGCTCTTAAATAAGTCAAACACGA
1 AAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGA
* * * * *
1542668 ACACTTATACTAATCCCCATTCATTTCAGGATTAGGCATCATAAACATAGTC-T-TC---A--AT
66 ATACTCATACTAATCCCCGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGAT
* * * *
1542726 ACATTATATTGAAGCTTTGGTTTCGCAAGAAAGGCTTTTTTTCACACCAATTTTTGTAAACTCTA
131 ACATCATATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTTTTCCCACCAATTTTTGTAAAGTCTA
* * * * * * *
1542791 AGTTCATGCCTCTAACGAGATAAACATGGATTCTAGAAAAGATCTTTTTTCATTTTGTGATTAGG
195 AGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGATTAGG
* * *
1542856 TACTACAAACA-ATTCTCCTC-TTCAGGATAAATGATATTGATGATTTTATTTTGCGTGGAAATC
260 CACTATAAACACATTCTCCTCATT-AGGATAAATGATATTGATGATTTTATTTTGCATGGAAATC
* ** * ** * *
1542919 TTTTCTTCACGTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAACAAACCAAGCTTCGATTCAC
324 TTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCATCGATTCTC
* ** * * * * * *
1542984 ATAATAGCCTCCATTCTTTTTTAGATTGGGAAGCGAACACACATTCCCTTTATTGGGATCCATGA
389 ATAATAGTCTCCATTCTTTTCAAGATTTGGAAGCAAAAACACATTCCCTTCATTAGGATACATGA
*
1543049 AATTGATGCTTTGGTGTC-ATAGG
454 CATTGATGCTTTGGTGTCGA-A-G
* *
1543072 AAAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGA
1 AAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGA
* *
1543137 ATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATTAGGAT
66 ATACTCATACTAATCCCCGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGAT
* * * **
1543202 ACATCATATTGATGCTTTGGCTTCTCAGGAAAGGCTTTTTTCCTTCCAATTTTTGTAAAGTCTAA
131 ACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAA
* * * *
1543267 GTTCATGACTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTC-TTTTGGTCATTAGG
196 GTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTT-GTGATTAGG
* * * *
1543331 CGCTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCT
260 CACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGGAAATCT
* * * * * * *
1543396 TTTCTTTGCCCTATTTTCCTTAAAATCTAAGCTCATCTTTTAAATAAGGCAAGCCTTGATTCTCG
325 TTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCATCGATTCTCA
* * * * * * * * *
1543461 TAA-CGATCTGCATTCTTTTCATGATTCGGATGCCAAAACACATTCCCTTCGTTAGGGTAAATGA
390 TAATAG-TCTCCATTCTTTTCAAGATTTGGAAGCAAAAACACATTCCCTTCATTAGGATACATGA
* *
1543525 CATTGATGCTTTGGGGTTGCAAG
454 CATTGATGCTTTGGTGTCG-AAG
* *
1543548 AAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATGA
1 AAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGA
* * * * * *
1543613 ATACTCATACTAGTCCCCGTTCTTTTCAAGATTAAGCACCATAAGCATAGTCTTCTCATTCGAAT
66 ATACTCATACTAATCCCCGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGAT
* * * *
1543678 GCATCATAATGATGCTTTTGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAA
131 ACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAA
* * * * ** *
1543743 GTTCGTACCTTAAATGAGACAAACATTGATTCTAGTAAAGATCTTCGTTCATTTTGTGATTAGGT
196 GTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGATTAGGC
* *
1543808 GCT-TAAACACATTCTGCTCATTA-GACTAAATGATATTGATGATTTTATTTTGCATGGAAATCT
261 ACTATAAACACATTCTCCTCATTAGGA-TAAATGATATTGATGATTTTATTTTGCATGGAAATCT
* * * *
1543871 TTTCTTTACCCTATTTTTCTTAGAATCAAAGTTCTTCCTTTAAATAAGGCATGCATCGATTCTCA
325 TTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCATCGATTCTCA
* *
1543936 TAACAGTCTCCATTCTTTTCAAGA-TTGAGAAGCAAAAACACATTCCCTTCATTAGGATGCATGA
390 TAATAGTCTCCATTCTTTTCAAGATTTG-GAAGCAAAAACACATTCCCTTCATTAGGATACATGA
1544000 CATTGATGCTTTGGTGTCGTAAG
454 CATTGATGCTTTGGTGTCG-AAG
* * * * *
1544023 AAAAACTTTTCTTTCCATCGTTTTTGACAGAAT-AAAGGTTTGTCTCTTAAATATGACAAACAAG
1 AAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAA-GTTTGTCTCTTAAATACGACAAACATG
* * *
1544087 AATACTGATACTAATCACCGTT-TTCTTCAGGATTAGGTC-CCATAAACATAGTCTTCTTATTAG
65 AATACTCATACTAATCCCCGTTCTT-TTCAGGATTAGG-CACCATAAACATAGTCTTCTCATTAG
* * * * *
1544150 GATACA-CGATATTGATGCTTTGGTTTTGCAAGAAATGC-TTTTTCCCCCCAACTTTTATAAAGT
128 GATACATC-ATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGT
* * * * * *
1544213 TTAAGTTCGTGCCTTAAATGAGACAAACATTGATTTTAGTAAAGATCTTCATTCATTTTGTGATT
192 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGATT
* *
1544278 AGGTACT-TAAACACATTCTGCTCATTA-GACTAAATGATATTGATGATTTTATTTTGCATGGAA
257 AGGCACTATAAACACATTCTCCTCATTAGGA-TAAATGATATTGATGATTTTATTTTGCATGGAA
* * *
1544341 ATCTTTTCTTTACCCTATTTTTCTTAGAATCAAAGTTCTTCCTTTAAATAAGGCAAGCATCGATT
321 ATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCATCGATT
* * *
1544406 CTCATAACAGTCTCCATTCTTTTCAAGA-TTGAGAAGCAAAAACACATTCCTTTCATTAGGATGC
386 CTCATAATAGTCTCCATTCTTTTCAAGATTTG-GAAGCAAAAACACATTCCCTTCATTAGGATAC
1544470 ATGACATTGATGCTTTGGTGTCGTAAG
450 ATGACATTGATGCTTTGGTGTCG-AAG
* * *
1544497 AAAAGCTTTTCTTTCCACCGTTTTTGACAGAAT-AAAGGTTTGTCTCTTAAATATGACAAACAAG
1 AAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAA-GTTTGTCTCTTAAATACGACAAACATG
* * * *
1544561 AATACTGATACTAATCACCGTT-TTCTTTAGGATTAGGTC-CCATAAACATAGTCTTCTTATTAG
65 AATACTCATACTAATCCCCGTTCTT-TTCAGGATTAGG-CACCATAAACATAGTCTTCTCATTAG
* * * *
1544624 GATACA-CGATATTGATGCTTTGGTTTTGCAAGCAAGGCTGTTTTCACACCAATTTTTGTAAAGT
128 GATACATC-ATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGT
* * * * * * *
1544688 CTAAGTTCGTGCCTCTAATGAGATAAACATGGATTCTAATAAAGATCTTTTTTCATTATGTGAAT
192 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGATT
* * * *
1544753 AGGTACTATAAACA-GTTCTCCTC-TTCAAGATAAATGATATTGATGATTTTATTTTGCGTGGAA
257 AGGCACTATAAACACATTCTCCTCATT-AGGATAAATGATATTGATGATTTTATTTTGCATGGAA
** * ** *
1544816 ATCTTTTCTTTACGTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAACAAACCAAGCTTCGATT
321 ATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCATCGATT
* * * * * * *
1544881 CTCATAATAGCCTCCATTCATTTT-AAGATTGGGAAGCGAACACACTTTCCCTTTATTAGGATAT
386 CTCATAATAGTCTCCATTC-TTTTCAAGATTTGGAAGCAAAAACACATTCCCTTCATTAGGATAC
* *
1544945 ATGAAATTGATGCTTTGGTGTCATAAG
450 ATGACATTGATGCTTTGGTGTC-GAAG
* * * * * *
1544972 AAAAGCTTTTCTTTCCACCGTTTTTTATAAAATCAAAGTTTATCTATTAAATATGACAAACTTGA
1 AAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGA
* **
1545037 ATACTCATACTAATCTCCGTTCTTTTCAGGATTAGGCACCATAAATGTAGTCTTCTCATTAGGAT
66 ATACTCATACTAATCCCCGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGAT
* * * ** *
1545102 ACATCATATTAATGCTTTGGTTTCGCAGGAAAGGTTTTTTTCGTACCAATTTTTATAAAGTCTAA
131 ACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAA
* * * *
1545167 GTTCGTGACTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTC-TTTTGGTCATTAGG
196 GTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTT-GTGATTAGG
* * *
1545231 CACTATAAGCACATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTTTTGCAT-GACAATC
260 CACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGGA-AATC
* * * * * *
1545295 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCCTTTAAATAAGTCCTAGCCTCGATTCC
324 TTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAG-GCAAGCATCGATTCT
* * * * * * * * * * * * **
1545360 CGTGACAATCTCCATTTTTTTCATGATTTGGATGCAAAAACGCGTTCCTTTCATTAGGGTAAACA
388 CATAATAGTCTCCATTCTTTTCAAGATTTGGAAGCAAAAACACATTCCCTTCATTAGGATACATG
* *
1545425 ACATTGATGCTTTGGGGTTGCAAG
453 ACATTGATGCTTTGGTGTCG-AAG
* *
1545449 AAAAGCTTTTCTTTTCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAAC
1 AAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAAC
1545510 CTGAGTTCAG
Statistics
Matches: 8550, Mismatches: 1264, Indels: 398
0.84 0.12 0.04
Matches are distributed among these distances:
441 2 0.00
442 152 0.02
443 197 0.02
444 2 0.00
445 4 0.00
446 3 0.00
448 1 0.00
449 6 0.00
451 1 0.00
452 1 0.00
455 1 0.00
458 2 0.00
459 5 0.00
460 2 0.00
463 1 0.00
466 1 0.00
467 2 0.00
468 3 0.00
469 308 0.04
470 93 0.01
471 3 0.00
472 4 0.00
473 58 0.01
474 744 0.09
475 2233 0.26
476 3069 0.36
477 1132 0.13
478 343 0.04
479 126 0.01
480 51 0.01
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (475 bp):
AAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGA
ATACTCATACTAATCCCCGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGAT
ACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAA
GTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGATTAGGC
ACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGGAAATCTT
TTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCATCGATTCTCAT
AATAGTCTCCATTCTTTTCAAGATTTGGAAGCAAAAACACATTCCCTTCATTAGGATACATGACA
TTGATGCTTTGGTGTCGAAG
Found at i:1542268 original size:159 final size:157
Alignment explanation
Indices: 1537944--1545335 Score: 1418
Period size: 159 Copynumber: 46.7 Consensus size: 157
1537934 AACATGTAGA
* * * * * * *
1537944 CACCATAAACATAGTCTTCTCATTCA-AATACATCATAATGATGCTTTGGTTTTGCAAGAAAGGC
1 CACCATAAACACAGTCTTCTCATT-AGGATACATGATATTGATGCTTTGGTTTCGTAAGAAAAGC
* * * * ** * ** * *
1538008 TTTT-TTCCCACCAATTTTTG-TAAAGTCTAAGTTTGTACCTCAAATGGGACAAACAAGGATTC-
65 TTTTCTTTCCACC-ATTTTCGATAAAATCAAAGTTCAT-CCTTAAA-AAGACAAACATGAATTCT
*
1538070 CAGTAA-AGATCTTCATTCATTTT--GTGATTAGG
127 CA-TAATA-ATCCTCATTC-TTTTCAG-GATTAGG
* * * * * * ** * * * * *
1538102 TACTATAAACACATTCTACTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGGAAATCT
1 CACCATAAACACAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGTAAGAAAAGCT
* * * * * *
1538167 TTTCTTTACC-CTATTTTTC-TTCAAATCAAAGTTTATCCTTTAAATAAGGCAAGCATTG-ATTC
66 TTTCTTT-CCACCA-TTTTCGATAAAATCAAAGTTCATCC-TTAAA-AAGACAAACA-TGAATTC
* * * *
1538229 TCATAACAGT-CTCAATTCTTCTCAAGATT-GAG
126 TCATAATAATCCTC-ATTCTTTTCAGGATTAG-G
* * * * ** * * ** * **
1538261 AAGCAAAAACACATTCCCCTCATTAGGATGCGTGACCTTGACGCTTTGGTGCCGTAAGAAAAGCT
1 CACCATAAACACAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGTAAGAAAAGCT
* * * * * * ** *
1538326 TTTCTTTCCACCGTTTTTGACAGAATGAAGGTTTGTCTCTTAAATACGACAAAC-TAGAATAT-T
66 TTTCTTTCCACCATTTTCGATAAAATCAAAGTTCATC-CTTAAA-AAGACAAACAT-GAAT-TCT
* * *
1538389 GATATTAAT-C-CATGTTTTCTTCAGGATTAGG
127 CATAATAATCCTCAT-TCTT-TTCAGGATTAGG
* * * * * * *
1538420 TACCATAAACATAGTCTTCTTATTAGGATACACGATATTGATGCTTTGGTTTTGCAAGAAAGGC-
1 CACCATAAACACAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGTAAGAAAAGCT
* * * * * * *
1538484 TTTC-TTCCCCCTAACTTTT--ATAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTC
66 TTTCTTTCCACC--A-TTTTCGATAAAATCAAAGTTCAT-CCTTAAA-AAGACAAACATGAATTC
* * * * * * * *
1538546 T-AGTGATGATCTTTATACATTT-GGTGATTTGG
126 TCA-TAATAATCCTCATTCTTTTCAG-GATTAGG
* * * * * ** * * * *
1538578 CACTAGAAACACATTCTCCTCATTAGGATGA-ATGATATTGATGATTTTCTTTTGTAGGGAAATC
1 CACCATAAACACAGTCTTCTCATTAGGAT-ACATGATATTGATGCTTTGGTTTCGTAAGAAAAGC
* * * ** * * * * *
1538642 TTTTCTTAGCC-CTACTTTCCTTAAAACCAAAGTTCATCTTTTAAATATGGCAAGCATCG-ATTC
65 TTTTCTT-TCCACCATTTTCGATAAAATCAAAGTTCATC-CTTAAA-AAGACAAACAT-GAATTC
* * * ** *
1538705 TCGTAATAGT-CTCCATT-TTTTTAACATTGGG
126 TCATAATAATCCT-CATTCTTTTCAGGATTAGG
* * * * * * * *
1538736 AAGCGA-AAACACATTC-CCTTCATTAGGCTACATGACATTGATGCTTTGATGTCGTAAGAAAAG
1 CA-CCATAAACACAGTCTTC-TCATTAGGATACATGATATTGATGCTTTGGTTTCGTAAGAAAAG
* * ** * **
1538799 CTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAAAACT
64 CTTTTCTTTCCACCATTTTCGATAAAATCAAAGTTCATC-CTTAAA-AAGACAAACATGAATTCT
* * * * * *
1538864 TATACTAATCCCCGTTCTTTTTAGGATAAGG
127 CATAATAATCCTCATTCTTTTCAGGATTAGG
* ** * * * *
1538895 CAGCATAAACTTAGTCTTCTTATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCT
1 CACCATAAACACAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGTAAGAAAAGCT
* * * * * * *
1538960 TTTTTTTCACACCCATTTTTG-TAAAGTCTAAGTTCGTGCCTCAAATAAGACAAACATGGATTCT
66 TTTCTTTC-CA-CCATTTTCGATAAAATCAAAGTTCAT-CCTTAAA-AAGACAAACATGAATTCT
* ** *
1539024 -AGTAA-AGATCTTTGTTCATTTTC-TGATTAGG
127 CA-TAATA-ATCCTCATTC-TTTTCAGGATTAGG
* * * * * * * * * * * * * *
1539055 TACTACAAACACAATCTGCTCATTAGGATAAACGATATTGATGATATT-ATTTTGCATGGAAATC
1 CACCATAAACACAGTCTTCTCATTAGGATACATGATATTGATGCT-TTGGTTTCGTAAGAAAAGC
* * * * *
1539119 TTTTCTTTACC-CTATTTTTC-TTAAAATCAAAGTTCATCCTTTAAATAAGGCGAGCATCG-ATT
65 TTTTCTTT-CCACCA-TTTTCGATAAAATCAAAGTTCATCC-TTAAA-AAGACAAACAT-GAATT
* * *
1539181 CTCATAACAGT-CTCCA-TCTTTTCAAGATT-GAG
125 CTCATAATAATCCT-CATTCTTTTCAGGATTAG-G
* * * * * * * * *
1539213 AAGCAAAAACATATTCCTT-TCATTAGGATGCAAGACATTGATGCTTTGGTGTCGTAAGAAAAGC
1 CACCATAAACACAGT-CTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGTAAGAAAAGC
* * * ** * * * *
1539277 TTTTCTTTCCACCATTTTTGACAGAATCAAAGTTTGTCTCTTAAATACGACAAACAAGAATACTG
65 TTTTCTTTCCACCATTTTCGATAAAATCAAAGTTCATC-CTTAAA-AAGACAAACATGAATTCTC
* *
1539342 ATAATAATCCT-TTTTTTTTCAGGATTTA-G
128 ATAATAATCCTCATTCTTTTCAGGA-TTAGG
* ** * * ** * *
1539371 TACCATAAACGTAGTCTTC-CTATTAGGATACACGACATTGATGCTTTGGTTTCACAAGGAAGGC
1 CACCATAAACACAGTCTTCTC-ATTAGGATACATGATATTGATGCTTTGGTTTCGTAAGAAAAGC
* * * * * * *
1539435 -TTTC-TTCGCCCCAATTTT-TATAAAGTCTAAA-TTC-GCGGCTCAAATGAGACAAACATGGAT
65 TTTTCTTTC-CACC-ATTTTCGATAAAATC-AAAGTTCATC--CTTAAA-AAGACAAACATGAAT
* * * * *
1539495 TCT-AGTAATGATCTTTATTCATTT-AGTGATTTGG
124 TCTCA-TAATAATCCTCATTCTTTTCAG-GATTAGG
* * * * * * ** *** * *
1539529 CACTATAAACACATTCTCCTCATTAGGATAAATGTTATTGATGATTTTCTTTTACAATGGAAATC
1 CACCATAAACACAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGTAA-GAAAAGC
* ** ** * * * *
1539594 TTTTCTTAGCC-TTATTTTCCTTAAAATCAAAGTTCATCTTTTAAATATGGCAAGCATCG-ATTC
65 TTTTCTT-TCCACCATTTTCGATAAAATCAAAGTTCATC-CTTAAA-AAGACAAACAT-GAATTC
* * * * * *
1539657 TCGTTATAGT-CTCCATTCTTTTTAAGATTGGG
126 TCATAATAATCCT-CATTCTTTTCAGGATTAGG
* ** * * * * *
1539689 AAGAAAAAACACATTC-CCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGC
1 CACCATAAACACAGTCTTC-TCATTAGGATACATGATATTGATGCTTTGGTTTCGTAAGAAAAGC
* * * * ** * * *
1539753 TTTTCTTTTCCACTATTTTTGATAGAATTAAAGTTTGTCTCTTAAATACGACAAACAAGAATACT
65 TTTTC-TTTCCACCATTTTCGATAAAATCAAAGTTCATC-CTTAAA-AAGACAAACATGAATTCT
* * *
1539818 CATACTAATCCCCATTCCTTTT-AGGATTAGA
127 CATAATAATCCTCATT-CTTTTCAGGATTAGG
* * * * * *
1539849 CAGCATAAACATAGTCTTGTTATTAGGATACATCG-TATTGATGCTTTGGTTTCGCAAGAAAGGC
1 CACCATAAACACAGTCTTCTCATTAGGATACAT-GATATTGATGCTTTGGTTTCGTAAGAAAAGC
* * * * * ** * * * *
1539913 TTTT-TTTCATACCAATTTTTG-TAAAGTCTAAGTTCGTGCCTCTAATGAGATACATATGGATTC
65 TTTTCTTTC-CACC-ATTTTCGATAAAATCAAAGTTCAT-CCT-TAAAAAGACAAACATGAATTC
* ** ** *
1539976 T-AGTAA-AGATCTTTTTTCATTTT-TTGAATAGG
126 TCA-TAATA-ATCCTCATTC-TTTTCAGGATTAGG
* * * * * * * ** * * * * *
1540008 TACTATAAGCA-ATTCTCCTC-TTCAGGATAAATGATATTGATGATTTTATTTTGCATGGAAATC
1 CACCATAAACACAGTCTTCTCATT-AGGATACATGATATTGATGCTTTGGTTTCGTAAGAAAAGC
***** ** * * *
1540071 TTTTCTTTATGTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAACTAA-CCAAGCTTCG-ATTC
65 TTTTCTTTCCACCATTTTCGATAAAATCAAAGTTCATCC-TTAAA--AAGACAAACAT-GAATTC
** * * *
1540134 TCATAATAGCCCCCATTCCTTTT-AAGATTGGG
126 TCATAATAATCCTCATT-CTTTTCAGGATTAGG
* * * * * * * *
1540166 AATCA-AACACACATTCACTT-T-TTTAGAATACATGAAATTGATGCTTTGGTGTCATAAGAAAA
1 CACCATAA-ACACAGT--CTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGTAAGAAAA
* * * *
1540228 GCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTATCTTTTAAAAACGACAAACATGAATAC
63 GCTTTTCTTTCCACCATTTTCGATAAAATCAAAGTTCATC-CTTAAAAA-GACAAACATGAATTC
* *
1540293 TCATACTAATCCTCATTCTTTTCACGATTAGG
126 TCATAATAATCCTCATTCTTTTCAGGATTAGG
* ** * *
1540325 CACCACAAATGCAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGT-AGCAAAGGC
1 CACCATAAACACAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGTAAG-AAAAGC
* ** * * * * *
1540389 -CTT-TTTCCTACCAATTTTCG-TAATGT-ATAAGTTCGTGACTCAAATGAGACAAACATGGATT
65 TTTTCTTTCC-ACC-ATTTTCGATAAAATCA-AAGTTCAT-CCTTAAA-AAGACAAACATGAATT
* * * * * *
1540450 CT-AGTAATGATCTTTATTCATTT-GGTGATTTGG
125 CTCA-TAATAATCCTCATTCTTTTCAG-GATTAGG
** * * * * * ** * * * * *
1540483 CAGTATAAACACATTCTCCTCATTAGGATGCACGATATTGATGATTTTCTTTTGCATGGAAATCT
1 CACCATAAACACAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGTAAGAAAAGCT
* * * ** * * *
1540548 TCTCTTAGCC-CTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATATGGCAAGCATCG-ATTCT
66 TTTCTT-TCCACCATTTTCGATAAAATCAAAGTTCATCC-TTAAA-AAGACAAACAT-GAATTCT
* * **
1540611 CTTAATAGT-CTCCATTCTTTTCAATATT-GAG
127 CATAATAATCCT-CATTCTTTTCAGGATTAG-G
* * * * * * *
1540642 AAGCAAAAACACATTCCTT-TCATTAGGATGCATGACATTGATGCTTTGGTGTCGTAAGAAAAGC
1 CACCATAAACACAGT-CTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGTAAGAAAAGC
* * * ** * *
1540706 TTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATGAATACTC
65 TTTTCTTTCCACCATTTTCGATAAAATCAAAGTTCATC-CTTAAA-AAGACAAACATGAATTCTC
* *
1540771 A-AACTAATCCCCGTTCTTTTCAGGATTAGG
128 ATAA-TAATCCTCATTCTTTTCAGGATTAGG
** * * * * * *
1540801 CACCAT-AACGTAGTCTCCTCATTAGGATACGTCATATTGACGCTTTGGTTTCGTAGGAAAGGC-
1 CACCATAAACACAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGTAAGAAAAGCT
** * * * * * * *
1540864 TTT-TTTCCTACCAATTTT-TTTGAAGTCTAAGTTCATGACTCAAATGAGACAAACATGGATTCT
66 TTTCTTTCC-ACC-ATTTTCGATAAAATCAAAGTTCAT-CCTTAAA-AAGACAAACATGAATTCT
* * ** *
1540927 -AGTAGTGATATTCATTCTTTT--GGTCATTAGA
127 CA-TAATAATCCTCATTCTTTTCAGG--ATTAGG
* * * * * * ** * * * * *
1540958 CACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCT
1 CACCATAAACACAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGTAAGAAAAGCT
* *** ** * *
1541023 TTTCTTTACGTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAACAA-ACCAAGCTTCG-ATTCT
66 TTTCTTTCCACCATTTTCGATAAAATCAAAGTTCATCC-TTAAA-AAGA-CAAACAT-GAATTCT
** * * *
1541086 CATAATAGCCCCCATTCCTTTT-AAGATTGGG
127 CATAATAATCCTCATT-CTTTTCAGGATTAGG
* * * * * * * * * *
1541117 AATCGA-ACACACATTCACTT-T-ATTAGGATACGTGAAATGGATTCTTTGGTGTCATAAGAAAA
1 CA-CCATAAACACAGT--CTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGTAAGAAAA
* ** * *
1541179 GTTTTTCTTTCCACTGTTTTCGATAAAATCAAAGTTTATCTCTTAAAAACGACAAACATGAATAC
63 GCTTTTCTTTCCACCATTTTCGATAAAATCAAAGTTCATC-CTTAAAAA-GACAAACATGAATTC
*
1541244 TCATACTAATCCTCATTCTTTTCAGGATTAGG
126 TCATAATAATCCTCATTCTTTTCAGGATTAGG
* * * * * * * * * *
1541276 CGCCACAAACGCAGTCTTCTCATTATGATACATCATGTTGACGCTTTGGTTTCGCAGGAAAGGC-
1 CACCATAAACACAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGTAAGAAAAGCT
* * * * * * * *
1541340 TTT-TTTCTTACCAATTTTCG-TAAAGTCTAAGTTCGTGACTCAAATGAGACAAACATGGATTCT
66 TTTCTTTC-CACC-ATTTTCGATAAAATCAAAGTTCAT-CCTTAAA-AAGACAAACATGAATTCT
* * * * * *
1541403 -AGTAATGATCTTTATTCATTT-GGTGATTTGG
127 CA-TAATAATCCTCATTCTTTTCAG-GATTAGG
* * * * * ** * * * * *
1541434 CACTATAAACACATTCTCCTCATTAGGATGA-ACGATATTGATGATTTTCTTTTGCATGGAAATC
1 CACCATAAACACAGTCTTCTCATTAGGAT-ACATGATATTGATGCTTTGGTTTCGTAAGAAAAGC
* * * ** * * * *
1541498 TTCTCTTAGCC-CTATTTTCTTTAAAATCAAAGTTCAACCTTTAAATATGGCAAGCATCG-ATTC
65 TTTTCTT-TCCACCATTTTCGATAAAATCAAAGTTCATCC-TTAAA-AAGACAAACAT-GAATTC
* * *
1541561 TCTTAATAGT-CTCCATTCTTTTCAAGATT-GAG
126 TCATAATAATCCT-CATTCTTTTCAGGATTAG-G
* * * * * * *
1541593 AAGCAAAAACACATTCCTT-TCATTAGGATTCATGACATTGATGCTTTGGTGTCGTAAGAAAAGC
1 CACCATAAACACAGT-CTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGTAAGAAAAGC
* * * * ** * ** *
1541657 TTTTCTTTCCACCGTTTTTGACAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAACACTT
65 TTTTCTTTCCACCATTTTCGATAAAATCAAAGTTCATC-CTTAAA-AAGACAAACATGAATTCTC
* * *
1541722 ATACTAATCCCCATTCATTTCAGGATTAGG
128 ATAATAATCCTCATTCTTTTCAGGATTAGG
* * * * * * *
1541752 CATCATAAACATAGTCTTCTTATTAGGATACATTATATTGAAGCTTTGGTTTCGCAAGAAAGGCT
1 CACCATAAACACAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGTAAGAAAAGCT
* * * * * * ** * * * *
1541817 TTTTTTTCACCCCAATTTTTG-TAAAGTCTAAGTTCGTGCCTCTAATGAGATACATATGGATTCT
66 TTTCTTTC-CACC-ATTTTCGATAAAATCAAAGTTCAT-CCT-TAAAAAGACAAACATGAATTCT
* ** ** *
1541881 -AGTAA-AGATCTTTTTTCATTTT-TTGAATAGG
127 CA-TAATA-ATCCTCATTC-TTTTCAGGATTAGG
* * * * * * ** * * * * *
1541912 TACTAT-AA-ACAGTTCTCCTC-TTCAAGATAAATGATATTGATGATTTTATTTTGCATGGAAAT
1 CACCATAAACACAG-TCTTCTCATT-AGGATACATGATATTGATGCTTTGGTTTCGTAAGAAAAG
* *** * * * *
1541974 CTTTTCTTTACGTTATTTTC-CTTAAATCAAAGTTCATCCTTTAAACAA-ACCAAGCTTCG-ATT
64 CTTTTCTTTCCACCATTTTCGATAAAATCAAAGTTCATCC-TTAAA-AAGA-CAAACAT-GAATT
** * * *
1542036 CTCATAATAGCCCTCATTCTTTTTAAGATTGGG
125 CTCATAATAATCCTCATTCTTTTCAGGATTAGG
* * * * * * * *
1542069 AATCGA-ACACGCATTCACTT-T-TTTAGGATACATGAAATTGATGCTTTGGTGTCGTAAGAAAA
1 CA-CCATAAACACAGT--CTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGTAAGAAAA
* *
1542131 GCTTTTCTTTCCACCATTTTCGATAAAATCAAAGTTTATCTCTTAAAAACGACAAACATGAATAC
63 GCTTTTCTTTCCACCATTTTCGATAAAATCAAAGTTCATC-CTTAAAAA-GACAAACATGAATTC
*
1542196 TCATACTAATCCTCATTCTTTTCAGGATTAGG
126 TCATAATAATCCTCATTCTTTTCAGGATTAGG
* ** * ** * *
1542228 CACCACAAATGCAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCACAGGAAAGGC-
1 CACCATAAACACAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGTAAGAAAAGCT
** * ** * * * *
1542292 TTT-TTTCCTACCAATTTTCG-TAAGGTCTAAGTTTGTGACTCAAATGAGACAAACATGGATTCT
66 TTTCTTTCC-ACC-ATTTTCGATAAAATCAAAGTTCAT-CCTTAAA-AAGACAAACATGAATTCT
* * * * * *
1542355 -AGTAATGATCTTTATTCATTT-GGTGATTTGG
127 CA-TAATAATCCTCATTCTTTTCAG-GATTAGG
* * * * * ** * * * * *
1542386 CACTATAAACACATTCTCCTCATTAGGATGA-ACGATATTGATGATTTTCTTTTGCATGGAAATC
1 CACCATAAACACAGTCTTCTCATTAGGAT-ACATGATATTGATGCTTTGGTTTCGTAAGAAAAGC
* ** * ** * *
1542450 TTCTCTTAGGC-CTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATATGGA-AAGCATCG-ATT
65 TTTTCTT-TCCACCATTTTCGATAAAATCAAAGTTCATCC-TTAAA-A-AGACAAACAT-GAATT
* * *
1542512 CTCTTAATAGT-CTCCATTCTTTTCAAGATT-GAG
125 CTCATAATAATCCT-CATTCTTTTCAGGATTAG-G
* * * * * * *
1542545 AAGCAAAAACACATTCCTT-TCATTAGGATGCATGACATTGATGCTTTGGTGTCGTAAGAAAAGC
1 CACCATAAACACAGT-CTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGTAAGAAAAGC
* * * * *** * * ** *
1542609 TTTTCTTTCCACCTTTTTTGACAGAATCAAAGTTTGGCTCTTAAATAAGTCAAACACGAACACTT
65 TTTTCTTTCCACCATTTTCGATAAAATCAAAGTTCATC-CTTAAA-AAGACAAACATGAATTCTC
* * *
1542674 ATACTAATCCCCATTCATTTCAGGATTAGG
128 ATAATAATCCTCATTCTTTTCAGGATTAGG
* * * * * *
1542704 CATCATAAACATAGTC-T-TC---A--ATACATTATATTGAAGCTTTGGTTTCGCAAGAAAGGCT
1 CACCATAAACACAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGTAAGAAAAGCT
* * * ** * *
1542762 TTT-TTTCACACCAATTTTTG-TAAACTCTAAGTTCATGCCTCTAACGAGATAAACATGGATTCT
66 TTTCTTTC-CACC-ATTTTCGATAAAATCAAAGTTCAT-CCT-TAAAAAGACAAACATGAATTCT
* * * **
1542825 -AGAAAAGATCTTTTTTCATTTT--GTGATTAGG
127 CATAATA-ATCCTCATTC-TTTTCAG-GATTAGG
* * * * * * * ** *
1542856 TACTACAAACA-ATTCTCCTC-TTCAGGATAAATGATATTGATGATTTTATTTTGCGT--GGAAA
1 CACCATAAACACAGTCTTCTCATT-AGGATACATGATATTGATG-CTTTGGTTT-CGTAAGAAAA
* * ** * *
1542917 TCTTTTC-TT-CACGTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAACAA-ACCAAGCTTCG-
63 GCTTTTCTTTCCAC--CATTTTCGATAAAATCAAAGTTCATCC-TTAAA-AAGA-CAAACAT-GA
* * * *
1542978 ATTCACATAAT-AGCCTCCATTCTTTTTTA-GATTGGG
122 ATTCTCATAATAATCCT-CATTC-TTTTCAGGATTAGG
* * * * * * * * * *
1543014 AAGCGA-ACACACATTCCCTT-T-ATTGGGATCCATGAAATTGATGCTTTGGTGTCATAGGAAAA
1 CA-CCATAAACACAGT--CTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGTAAGAAAA
** * ** * *
1543076 GCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATAC
63 GCTTTTCTTTCCACCATTTTCGATAAAATCAAAGTTCATC-CTTAAA-AAGACAAACATGAATTC
* *
1543141 TCATACTAATCCCCATTCTTTTCAGGATTAGG
126 TCATAATAATCCTCATTCTTTTCAGGATTAGG
** * * * *
1543173 CACCATAAACGTAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGCTTC-TCAGGAAAGGC
1 CACCATAAACACAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGT-AAGAAAAGC
* * * * * * * *
1543237 -TTT-TTTCCTTCCAATTTTTG-TAAAGTCTAAGTTCATGACTCAAATGAGACAAACATGGATTC
65 TTTTCTTTCC-ACC-ATTTTCGATAAAATCAAAGTTCAT-CCTTAAA-AAGACAAACATGAATTC
* *
1543299 T-AGTAATGATCTTCATTCTTTT--GGTCATTAGG
126 TCA-TAATAATCCTCATTCTTTTCAGG--ATTAGG
* * * * * * * ** * * * *
1543331 CGCTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCT
1 CACCATAAACACAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGTAAGAAAAGCT
* ** * * * * * *
1543396 TTTCTTTGCC-CTATTTTCCTTAAAATCTAAGCTCATCTTTTAAATAAGGCAAGCCTTG-ATTCT
66 TTTCTTT-CCACCATTTTCGATAAAATCAAAGTTCATC-CTTAAA-AAGACAA-ACATGAATTCT
* ** * *
1543459 CGTAACGAT-CTGCATTCTTTTCATGATTCGG
127 CATAATAATCCT-CATTCTTTTCAGGATTAGG
* * * * * * * *
1543490 -ATGCCA-AAACACATTC-CCTTCGTTAGGGTAAATGACATTGATGCTTTGGGGTT-GCAAGAAA
1 CA--CCATAAACACAGTCTTC-TCATTAGGATACATGATATTGATGCTTT-GGTTTCGTAAGAAA
** * * ** * *
1543551 AGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATGAATA
62 AGCTTTTCTTTCCACCATTTTCGATAAAATCAAAGTTCATC-CTTAAA-AAGACAAACATGAATT
* * * * * *
1543616 CTCATACTAGTCCCCGTTCTTTTCAAGATTAAG
125 CTCATAATAATCCTCATTCTTTTCAGGATTAGG
* * * * * * * * * * *
1543649 CACCATAAGCATAGTCTTCTCATTCGAATGCATCATAATGATGCTTTTGTTTTGCAAGAAAGGCT
1 CACCATAAACACAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGTAAGAAAAGCT
* * * * * *
1543714 TTT-TTCCCACCAATTTTTG-TAAAGTCTAAGTTCGTACCTTAAATGAGACAAACATTG-ATTCT
66 TTTCTTTCCACC-ATTTTCGATAAAATCAAAGTTCAT-CCTTAAA-AAGACAAACA-TGAATTCT
* *
1543776 -AGTAA-AGATCTTCGTTCATTTT--GTGATTAGG
127 CA-TAATA-ATCCTCATTC-TTTTCAG-GATTAGG
** * * * * * ** * * * * *
1543807 -TGCTTAAACACATTCTGCTCATTA-GACTAAATGATATTGATGATTTTATTTTGCATGGAAATC
1 CACCATAAACACAGTCTTCTCATTAGGA-TACATGATATTGATGCTTTGGTTTCGTAAGAAAAGC
* * * * * **
1543870 TTTTCTTTACC-CTATTTTTC-TTAGAATCAAAGTTCTTCCTTTAAATAAGGCATGCATCG-ATT
65 TTTTCTTT-CCACCA-TTTTCGATAAAATCAAAGTTCATCC-TTAAA-AAGACAAACAT-GAATT
* * *
1543932 CTCATAACAGT-CTCCATTCTTTTCAAGATT-GAG
125 CTCATAATAATCCT-CATTCTTTTCAGGATTAG-G
* * * * * * * * *
1543965 AAGCAAAAACACATTC-CCTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGTAAGAAAAAC
1 CACCATAAACACAGTCTTC-TCATTAGGATACATGATATTGATGCTTTGGTTTCGTAAGAAAAGC
* * * * * ** * * *
1544029 TTTTCTTTCCATCGTTTTTGACAGAAT-AAAGGTTTGTCTCTTAAATATGACAAACAAGAATACT
65 TTTTCTTTCCACCATTTTCGATAAAATCAAA-GTTCATC-CTTAAA-AAGACAAACATGAATTCT
* * *
1544093 GATACTAATCAC-CGTT-TTCTTCAGGATTAGG
127 CATAATAATC-CTCATTCTT-TTCAGGATTAGG
* * * * * *
1544124 TC-CCATAAACATAGTCTTCTTATTAGGATACACGATATTGATGCTTTGGTTTTGCAAGAAATGC
1 -CACCATAAACACAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGTAAGAAAAGC
* * * ** * *
1544188 -TTT-TTCCCCCCAACTTTT--ATAAAGTTTAAGTTCGTGCCTTAAATGAGACAAACATTG-ATT
65 TTTTCTTTCCACC-A-TTTTCGATAAAATCAAAGTTCAT-CCTTAAA-AAGACAAACA-TGAATT
* *
1544248 -TTAGTAA-AGATCTTCATTCATTTT--GTGATTAGG
125 CTCA-TAATA-ATCCTCATTC-TTTTCAG-GATTAGG
* * * * * * ** * * * * *
1544281 TA-CTTAAACACATTCTGCTCATTA-GACTAAATGATATTGATGATTTTATTTTGCATGGAAATC
1 CACCATAAACACAGTCTTCTCATTAGGA-TACATGATATTGATGCTTTGGTTTCGTAAGAAAAGC
* * * * * *
1544344 TTTTCTTTACC-CTATTTTTC-TTAGAATCAAAGTTCTTCCTTTAAATAAGGCAAGCATCG-ATT
65 TTTTCTTT-CCACCA-TTTTCGATAAAATCAAAGTTCATCC-TTAAA-AAGACAAACAT-GAATT
* * *
1544406 CTCATAACAGT-CTCCATTCTTTTCAAGATT-GAG
125 CTCATAATAATCCT-CATTCTTTTCAGGATTAG-G
* * * * * * *
1544439 AAGCAAAAACACATTCCTT-TCATTAGGATGCATGACATTGATGCTTTGGTGTCGTAAGAAAAGC
1 CACCATAAACACAGT-CTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGTAAGAAAAGC
* * * * ** * * *
1544503 TTTTCTTTCCACCGTTTTTGACAGAAT-AAAGGTTTGTCTCTTAAATATGACAAACAAGAATACT
65 TTTTCTTTCCACCATTTTCGATAAAATCAAA-GTTCATC-CTTAAA-AAGACAAACATGAATTCT
* * * *
1544567 GATACTAATCAC-CGTT-TTCTTTAGGATTAGG
127 CATAATAATC-CTCATTCTT-TTCAGGATTAGG
* * * * * * *
1544598 TC-CCATAAACATAGTCTTCTTATTAGGATACACGATATTGATGCTTTGGTTTTGCAAGCAAGGC
1 -CACCATAAACACAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGTAAGAAAAGC
* * * * * ** * *
1544662 -TGT-TTTCACACCAATTTTTG-TAAAGTCTAAGTTCGTGCCTCTAATGAGATAAACATGGATTC
65 TTTTCTTTC-CACC-ATTTTCGATAAAATCAAAGTTCAT-CCT-TAAAAAGACAAACATGAATTC
* * ** * *
1544724 TAATAA-AGATCTTTTTTC-ATT-ATGTGAATAGG
126 TCATAATA-ATCCTCATTCTTTTCA-G-GATTAGG
* * * * * * ** *
1544756 TACTAT-AA-ACAGTTCTCCTC-TTCAAGATAAATGATATTGATGATTTTATTTTGCGT--GGAA
1 CACCATAAACACAG-TCTTCTCATT-AGGATACATGATATTGATG-CTTTGGTTT-CGTAAGAAA
* * *** ** * *
1544816 ATCTTTTCTTTACGTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAACAA-ACCAAGCTTCG-A
62 AGCTTTTCTTTCCACCATTTTCGATAAAATCAAAGTTCATCC-TTAAA-AAGA-CAAACAT-GAA
* * *
1544879 TTCTCATAAT-AGCCTCCATTCATTTT-AAGATTGGG
123 TTCTCATAATAATCCT-CATTC-TTTTCAGGATTAGG
* * * * * * * * *
1544914 AAGC--GAACACACT-TTCCCTTTATTAGGATATATGAAATTGATGCTTTGGTGTCATAAGAAAA
1 CACCATAAACACAGTCTT--C-TCATTAGGATACATGATATTGATGCTTTGGTTTCGTAAGAAAA
* ** * * * * *
1544976 GCTTTTCTTTCCACCGTTTTTTATAAAATCAAAGTTTATCTATTAAATATGACAAACTTGAATAC
63 GCTTTTCTTTCCACCATTTTCGATAAAATCAAAGTTCATC-CTTAAA-AAGACAAACATGAATTC
* *
1545041 TCATACTAAT-CTCCGTTCTTTTCAGGATTAGG
126 TCATAATAATCCT-CATTCTTTTCAGGATTAGG
*** * * * * *
1545073 CACCATAAATGTAGTCTTCTCATTAGGATACATCATATTAATGCTTTGGTTTCG-CAGGAAAGGT
1 CACCATAAACACAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGTAAGAAAAGCT
* * * * * * * *
1545137 TTT-TTTCGTACCAATTTT-TATAAAGTCTAAGTTCGTGACTCAAATGAGACAAACAT-AGATTC
66 TTTCTTTC-CACC-ATTTTCGATAAAATCAAAGTTCAT-CCTTAAA-AAGACAAACATGA-ATTC
* *
1545199 T-AGTAATGATCTTCATTCTTTT--GGTCATTAGG
126 TCA-TAATAATCCTCATTCTTTTCAGG--ATTAGG
* * * * * * * ** * * * * *
1545231 CACTATAAGCACATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTTTTGCATGACAATCT
1 CACCATAAACACAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGTAAGAAAAGCT
* ** *
1545296 TTTCTTTGCC-CTATTTTCCTTAAAATCAAAGCTCATCCTT
66 TTTCTTT-CCACCATTTTCGATAAAATCAAAGTTCATCCTT
1545336 TAAATAAGTC
Statistics
Matches: 5068, Mismatches: 1687, Indels: 958
0.66 0.22 0.12
Matches are distributed among these distances:
151 11 0.00
152 80 0.02
153 15 0.00
154 1 0.00
155 4 0.00
156 85 0.02
157 440 0.09
158 1676 0.33
159 2217 0.44
160 468 0.09
161 68 0.01
162 3 0.00
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.37
Consensus pattern (157 bp):
CACCATAAACACAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGTAAGAAAAGCT
TTTCTTTCCACCATTTTCGATAAAATCAAAGTTCATCCTTAAAAAGACAAACATGAATTCTCATA
ATAATCCTCATTCTTTTCAGGATTAGG
Found at i:1548253 original size:646 final size:646
Alignment explanation
Indices: 1547023--1548314 Score: 2566
Period size: 646 Copynumber: 2.0 Consensus size: 646
1547013 TCTTGGTTGA
1547023 TGATGACAACCATGAACCAAGGTTGCCTAAATAATGATCTTGAGATGGATTTCTAACAATAAACA
1 TGATGACAACCATGAACCAAGGTTGCCTAAATAATGATCTTGAGATGGATTTCTAACAATAAACA
1547088 GAATTATTGATGCAAGAACAGAAATTGAAAGAAGCAGAAAAAAATAACAAAATGGAATAGATTAG
66 GAATTATTGATGCAAGAACAGAAATTGAAAGAAGCAGAAAAAAATAACAAAATGGAATAGATTAG
1547153 AGATGAAGGATGGCGCCACAATCACAAGATTGATAAGCCAAAAGGAATGATCGCCACAAGAGTCT
131 AGATGAAGGATGGCGCCACAATCACAAGATTGATAAGCCAAAAGGAATGATCGCCACAAGAGTCT
1547218 TGGCCTCTTGATAAGATCCAGAAAAATTGGCTCACTCAAGAACCTAAGAATCACTCTCACACAAA
196 TGGCCTCTTGATAAGATCCAGAAAAATTGGCTCACTCAAGAACCTAAGAATCACTCTCACACAAA
1547283 AATGTGTTTAATCTGCAAATATGAATGTCTGCCCCCTCCAAATCTGTTTACAAGAGCTTATATAT
261 AATGTGTTTAATCTGCAAATATGAATGTCTGCCCCCTCCAAATCTGTTTACAAGAGCTTATATAT
1547348 GCCCTCATAAGCCATAGTTAACACAAACCCTAAGGGGCTTATTATGCTAACAAGCCCAACTCTTA
326 GCCCTCATAAGCCATAGTTAACACAAACCCTAAGGGGCTTATTATGCTAACAAGCCCAACTCTTA
1547413 CTTAAACCCAAATAACAAGTTTCTATGCTAAATAAAGCCCAAAGCAAGTCACAACCAGCAGGCCC
391 CTTAAACCCAAATAACAAGTTTCTATGCTAAATAAAGCCCAAAGCAAGTCACAACCAGCAGGCCC
1547478 TTTATTACAAAATAACCCAAGTCCTAATTGAATCCATTGGAGCCCATATCTTCCAAATATATGCA
456 TTTATTACAAAATAACCCAAGTCCTAATTGAATCCATTGGAGCCCATATCTTCCAAATATATGCA
1547543 ATTAACTAGCTTGGGCTCTTCTAACTCCAGATTGGGTCTACTTTCAAATAGGCCAGCAACCATCT
521 ATTAACTAGCTTGGGCTCTTCTAACTCCAGATTGGGTCTACTTTCAAATAGGCCAGCAACCATCT
1547608 TCTCTAGGTCTTCCTTTATCCTCTTTGCCTTTGCCCTCGTTATTGGTCCTTGAAATCCTTC
586 TCTCTAGGTCTTCCTTTATCCTCTTTGCCTTTGCCCTCGTTATTGGTCCTTGAAATCCTTC
1547669 TGATGACAACCATGAACCAAGGTTGCCTAAATAATGATCTTGAGATGGATTTCTAACAATAAACA
1 TGATGACAACCATGAACCAAGGTTGCCTAAATAATGATCTTGAGATGGATTTCTAACAATAAACA
*
1547734 GAATTATTGATGCAAGAACAGAAATTGAAAGAAGTAGAAAAAAATAACAAAATGGAATAGATTAG
66 GAATTATTGATGCAAGAACAGAAATTGAAAGAAGCAGAAAAAAATAACAAAATGGAATAGATTAG
1547799 AGATGAAGGATGGCGCCACAATCACAAGATTGATAAGCCAAAAGGAATGATCGCCACAAGAGTCT
131 AGATGAAGGATGGCGCCACAATCACAAGATTGATAAGCCAAAAGGAATGATCGCCACAAGAGTCT
1547864 TGGCCTCTTGATAAGATCCAGAAAAATTGGCTCACTCAAGAACCTAAGAATCACTCTCACACAAA
196 TGGCCTCTTGATAAGATCCAGAAAAATTGGCTCACTCAAGAACCTAAGAATCACTCTCACACAAA
1547929 AATGTGTTTAATCTGCAAATATGAATGTCTGCCCCCTCCAAATCTGTTTACAAGAGCTTATATAT
261 AATGTGTTTAATCTGCAAATATGAATGTCTGCCCCCTCCAAATCTGTTTACAAGAGCTTATATAT
*
1547994 GCCCTCATAAGCCATAGTTAACACAAACTCTAAGGGGCTTATTATGCTAACAAGCCCAACTCTTA
326 GCCCTCATAAGCCATAGTTAACACAAACCCTAAGGGGCTTATTATGCTAACAAGCCCAACTCTTA
1548059 CTTAAACCCAAATAACAAGTTTCTATGCTAAATAAAGCCCAAAGCAAGTCACAACCAGCAGGCCC
391 CTTAAACCCAAATAACAAGTTTCTATGCTAAATAAAGCCCAAAGCAAGTCACAACCAGCAGGCCC
1548124 TTTATTACAAAATAACCCAAGTCCTAATTGAATCCATTGGAGCCCATATCTTCCAAATATATGCA
456 TTTATTACAAAATAACCCAAGTCCTAATTGAATCCATTGGAGCCCATATCTTCCAAATATATGCA
1548189 ATTAACTAGCTTGGGCTCTTCTAACTCCAGATTGGGTCTACTTTCAAATAGGCCAGCAACCATCT
521 ATTAACTAGCTTGGGCTCTTCTAACTCCAGATTGGGTCTACTTTCAAATAGGCCAGCAACCATCT
1548254 TCTCTAGGTCTTCCTTTATCCTCTTTGCCTTTGCCCTCGTTATTGGTCCTTGAAATCCTTC
586 TCTCTAGGTCTTCCTTTATCCTCTTTGCCTTTGCCCTCGTTATTGGTCCTTGAAATCCTTC
1548315 CAACGCCTTC
Statistics
Matches: 644, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
646 644 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.26
Consensus pattern (646 bp):
TGATGACAACCATGAACCAAGGTTGCCTAAATAATGATCTTGAGATGGATTTCTAACAATAAACA
GAATTATTGATGCAAGAACAGAAATTGAAAGAAGCAGAAAAAAATAACAAAATGGAATAGATTAG
AGATGAAGGATGGCGCCACAATCACAAGATTGATAAGCCAAAAGGAATGATCGCCACAAGAGTCT
TGGCCTCTTGATAAGATCCAGAAAAATTGGCTCACTCAAGAACCTAAGAATCACTCTCACACAAA
AATGTGTTTAATCTGCAAATATGAATGTCTGCCCCCTCCAAATCTGTTTACAAGAGCTTATATAT
GCCCTCATAAGCCATAGTTAACACAAACCCTAAGGGGCTTATTATGCTAACAAGCCCAACTCTTA
CTTAAACCCAAATAACAAGTTTCTATGCTAAATAAAGCCCAAAGCAAGTCACAACCAGCAGGCCC
TTTATTACAAAATAACCCAAGTCCTAATTGAATCCATTGGAGCCCATATCTTCCAAATATATGCA
ATTAACTAGCTTGGGCTCTTCTAACTCCAGATTGGGTCTACTTTCAAATAGGCCAGCAACCATCT
TCTCTAGGTCTTCCTTTATCCTCTTTGCCTTTGCCCTCGTTATTGGTCCTTGAAATCCTTC
Found at i:1553165 original size:15 final size:15
Alignment explanation
Indices: 1553127--1553165 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
1553117 AAGAATACAA
1553127 AAAAAAAAAAGAAAG
1 AAAAAAAAAAGAAAG
* * *
1553142 AATACAAAAAGAGAG
1 AAAAAAAAAAGAAAG
1553157 AAAAAAAAA
1 AAAAAAAAA
1553166 CCAGTATTTG
Statistics
Matches: 19, Mismatches: 5, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.82, C:0.03, G:0.13, T:0.03
Consensus pattern (15 bp):
AAAAAAAAAAGAAAG
Found at i:1553934 original size:12 final size:11
Alignment explanation
Indices: 1553912--1553987 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
1553902 AGAGAAAGAA
*
1553912 GAGAGAGGAGG
1 GAGATAGGAGG
1553923 GATGATAGGAGG
1 GA-GATAGGAGG
*
1553935 AGAGACAGGA--
1 -GAGATAGGAGG
*
1553945 GAGATAGTA--
1 GAGATAGGAGG
1553954 GAGATAGGAGG
1 GAGATAGGAGG
1553965 GATGATAGGAGG
1 GA-GATAGGAGG
*
1553977 AGAGACAGGAG
1 -GAGATAGGAG
1553988 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:1553963 original size:42 final size:42
Alignment explanation
Indices: 1553902--1554020 Score: 202
Period size: 42 Copynumber: 2.8 Consensus size: 42
1553892 TAGCCCTCAA
* *
1553902 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
1553944 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
1553986 AGAGATAATAGAGAGAGGAGGGATGATAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
1554021 GAGAGAAGAA
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 72 1.00
ACGTcount: A:0.43, C:0.02, G:0.46, T:0.09
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:1554004 original size:18 final size:18
Alignment explanation
Indices: 1553977--1554026 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
1553967 TGATAGGAGG
*
1553977 AGAGACAGGAGAGATAAT
1 AGAGAGAGGAGAGATAAT
* *
1553995 AGAGAGAGGAGGGATGAT
1 AGAGAGAGGAGAGATAAT
1554013 AG-GAGGAGGAGAGA
1 AGAGA-GAGGAGAGA
1554027 AGAAGATGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
17 2 0.07
18 25 0.93
ACGTcount: A:0.44, C:0.02, G:0.46, T:0.08
Consensus pattern (18 bp):
AGAGAGAGGAGAGATAAT
Found at i:1559402 original size:42 final size:42
Alignment explanation
Indices: 1559347--1559465 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
1559337 TTCTTCTCTC
* *
1559347 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
1559389 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTGCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
1559431 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
1559466 TTGAGGGCTA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.08, C:0.45, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:1559407 original size:24 final size:24
Alignment explanation
Indices: 1559371--1559456 Score: 76
Period size: 24 Copynumber: 3.8 Consensus size: 24
1559361 CCTCCTCTCT
* *
1559371 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
1559395 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
*
1559416 CTATC-T--CTGCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
1559437 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
1559457 TCTTTCTCTT
Statistics
Matches: 47, Mismatches: 9, Indels: 12
0.69 0.13 0.18
Matches are distributed among these distances:
18 3 0.06
20 5 0.11
21 14 0.30
22 5 0.11
24 20 0.43
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:1565355 original size:42 final size:42
Alignment explanation
Indices: 1565300--1565418 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
1565290 TTCTTCTCTC
* *
1565300 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
1565342 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
1565384 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
1565419 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:1565359 original size:12 final size:11
Alignment explanation
Indices: 1565333--1565408 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
1565323 TCTATTATCT
*
1565333 CTCCTGTCTCTC
1 CTCCTATCTC-C
1565345 CTCCTATCATCC
1 CTCCTATC-TCC
1565357 CTCCTATCT--
1 CTCCTATCTCC
*
1565366 CTACTATCT--
1 CTCCTATCTCC
*
1565375 CTCCTGTCTCTC
1 CTCCTATCTC-C
1565387 CTCCTATCATCC
1 CTCCTATC-TCC
*
1565399 CTCCTCTCTC
1 CTCCTATCTC
1565409 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:1565360 original size:24 final size:24
Alignment explanation
Indices: 1565324--1565409 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
1565314 CCTCCTCTCT
* *
1565324 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
1565348 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
1565369 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
1565390 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
1565410 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:1565384 original size:18 final size:18
Alignment explanation
Indices: 1565315--1565385 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
1565305 CCTGTCATCC
* *
1565315 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
1565333 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
1565355 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
1565375 CTCCTGTCTCT
1 CTCCTGTCTCT
1565386 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:1571156 original size:15 final size:15
Alignment explanation
Indices: 1571138--1571191 Score: 54
Period size: 15 Copynumber: 3.4 Consensus size: 15
1571128 CTTCTTCTCT
*
1571138 CCTCCTCCTGTTATC
1 CCTCCTCCTATTATC
1571153 CCTCCTCTCTCTATTATC
1 CCT-C-CTC-CTATTATC
* *
1571171 TCTCCTCCTATCATC
1 CCTCCTCCTATTATC
1571186 CCTCCT
1 CCTCCT
1571192 ATCTCTACTA
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
15 15 0.47
16 4 0.12
17 4 0.12
18 9 0.28
ACGTcount: A:0.09, C:0.48, G:0.02, T:0.41
Consensus pattern (15 bp):
CCTCCTCCTATTATC
Found at i:1571159 original size:18 final size:19
Alignment explanation
Indices: 1571136--1571179 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
1571126 ATCTTCTTCT
*
1571136 CTCCTCCTC-CTGTTATCC
1 CTCCTCCTCTCTATTATCC
*
1571154 CTCCT-CTCTCTATTATCT
1 CTCCTCCTCTCTATTATCC
1571172 CTCCTCCT
1 CTCCTCCT
1571180 ATCATCCCTC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 3 0.14
18 17 0.77
19 2 0.09
ACGTcount: A:0.07, C:0.48, G:0.02, T:0.43
Consensus pattern (19 bp):
CTCCTCCTCTCTATTATCC
Found at i:1571187 original size:33 final size:33
Alignment explanation
Indices: 1571139--1571209 Score: 106
Period size: 33 Copynumber: 2.2 Consensus size: 33
1571129 TTCTTCTCTC
* * * *
1571139 CTCCTCCTGTTATCCCTCCTCTCTCTATTATCT
1 CTCCTCCTATCATCCCTCCTATCTCTACTATCT
1571172 CTCCTCCTATCATCCCTCCTATCTCTACTATCT
1 CTCCTCCTATCATCCCTCCTATCTCTACTATCT
1571205 CTCCT
1 CTCCT
1571210 ATCTCTCCTC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.11, C:0.45, G:0.01, T:0.42
Consensus pattern (33 bp):
CTCCTCCTATCATCCCTCCTATCTCTACTATCT
Found at i:1571189 original size:12 final size:11
Alignment explanation
Indices: 1571167--1571238 Score: 71
Period size: 12 Copynumber: 6.5 Consensus size: 11
1571157 CTCTCTCTAT
1571167 TATCTCTCCTCC
1 TATCTC-CCTCC
1571179 TATCATCCCTCC
1 TATC-TCCCTCC
*
1571191 TATCT--CTAC
1 TATCTCCCTCC
1571200 TATCT--CTCC
1 TATCTCCCTCC
1571209 TATCTCTCCTCC
1 TATCTC-CCTCC
1571221 TATCATCCCTCC
1 TATC-TCCCTCC
1571233 TATCTC
1 TATCTC
1571239 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 2, Indels: 11
0.80 0.03 0.17
Matches are distributed among these distances:
9 16 0.30
11 3 0.06
12 30 0.57
13 4 0.08
ACGTcount: A:0.14, C:0.46, G:0.00, T:0.40
Consensus pattern (11 bp):
TATCTCCCTCC
Found at i:1571210 original size:18 final size:17
Alignment explanation
Indices: 1571149--1571215 Score: 59
Period size: 18 Copynumber: 3.9 Consensus size: 17
1571139 CTCCTCCTGT
*
1571149 TATCCCTCCTCTCTCTA
1 TATCCCTCCTATCTCTA
*
1571166 TTATCTCTCC--TC-CTA
1 -TATCCCTCCTATCTCTA
1571181 TCATCCCTCCTATCTCTA
1 T-ATCCCTCCTATCTCTA
*
1571199 CTATCTCTCCTATCTCT
1 -TATCCCTCCTATCTCT
1571216 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 3, Indels: 10
0.76 0.06 0.19
Matches are distributed among these distances:
14 1 0.02
15 10 0.24
16 2 0.05
17 2 0.05
18 25 0.61
19 1 0.02
ACGTcount: A:0.13, C:0.43, G:0.00, T:0.43
Consensus pattern (17 bp):
TATCCCTCCTATCTCTA
Found at i:1571213 original size:42 final size:42
Alignment explanation
Indices: 1571167--1571248 Score: 146
Period size: 42 Copynumber: 2.0 Consensus size: 42
1571157 CTCTCTCTAT
1571167 TATCTCTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCC
1 TATCTCTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCC
* *
1571209 TATCTCTCCTCCTATCATCCCTCCTATCTCTTCTTTCTCT
1 TATCTCTCCTCCTATCATCCCTCCTATCTCTACTATCTCT
1571249 TTGAGGGCTA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.12, C:0.44, G:0.00, T:0.44
Consensus pattern (42 bp):
TATCTCTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCC
Found at i:1571216 original size:9 final size:9
Alignment explanation
Indices: 1571187--1571218 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
1571177 CCTATCATCC
1571187 CTCCTATCT
1 CTCCTATCT
*
1571196 CTACTATCT
1 CTCCTATCT
1571205 CTCCTATCT
1 CTCCTATCT
1571214 CTCCT
1 CTCCT
1571219 CCTATCATCC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.12, C:0.44, G:0.00, T:0.44
Consensus pattern (9 bp):
CTCCTATCT
Found at i:1573494 original size:159 final size:158
Alignment explanation
Indices: 1572864--1574414 Score: 558
Period size: 158 Copynumber: 9.8 Consensus size: 158
1572854 CATCAGTAAC
* * * * * *
1572864 AGTCTCCATTCTTTTCAAGATTGAGAAACGA-AAATACATTCCCTTCATTAGGATGCGTGACATT
1 AGTCTTCATTCTTTTCAAGATT-AGGAACCACAAACACATTCCCTTCATTAGGATACATGACATT
1572928 GAAGCTTTGGTGTTGCAAGGAAAGCTTTTCTTTCCACCATTTTTAATAGAATCAAAGTTTATCTC
65 GAAGCTTTGGTGTTGCAAGGAAAGCTTTTCTTTCCACCA-TTTTAATAGAATCAAAGTTTATCTC
**
1572993 TTAAATAAGACAAACAAGAATACTCATTCT
129 TTAAATAAGACAAACAAGAATACTCATAAT
* * * * * * * * * * *
1573023 AATCCT-ATTCTTTTTAGGATTAGGCACCATAAATATAGT-CTTCTCATTAGGATACATGATATT
1 AGTCTTCATTCTTTTCAAGATTAGGAACCACAAACACATTCCCT-TCATTAGGATACATGACATT
* * * * * * * * * *
1573086 GATGCTTTCGT-TT-CACAAGAATGGCTTTT-TTCCCATCAATATTT-GTA-AAGTCTAAGGTTG
65 GAAGCTTTGGTGTTGCA-AGGAA-AGCTTTTCTTTCCA-CCAT-TTTAATAGAA-TCAAAGTTTA
** * * * * * *
1573146 TGACTCAAATGAGACAAACATGGAT-TTTAGTAAT
125 TCTCTTAAATAAGACAAACAAGAATACTCA-TAAT
* *** * * * * *
1573180 -GATCTTAATTCTTTTGGCGATTAGGCACTACAAACACATTCTCCTT-AATAGGATAAATGATAT
1 AG-TCTTCATTCTTTTCAAGATTAGGAACCACAAACACATTC-CCTTCATTAGGATACATGACAT
* * ** * * * * ** * *
1573243 TGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCC-CTATTTTCCTTAAAATCAAAGTTCATC
64 TGAAGCTTTGGTGTTGCAAGGAAAGCTTTTCTTT-CCACCATTTT-AATAGAATCAAAGTTTATC
* * ** *
1573307 -CTTTAAATAAGGCAAGTCTCG-ATTCTCATAAT
127 TC-TTAAATAAGACAA-ACAAGAATACTCATAAT
* *
1573339 AGTCTTCATTCTTTTCAAGATTTGGAAGCCA-AAACACATTCCCTTCATTAGGATGCATGACATT
1 AGTCTTCATTCTTTTCAAGATTAGGAA-CCACAAACACATTCCCTTCATTAGGATACATGACATT
*
1573403 GAAGCTTTGGTGTTGCAAGGAAAGCTTTTCTTTCCACCACTTTTAATAGAATCAAAATTTATCTC
65 GAAGCTTTGGTGTTGCAAGGAAAGCTTTTCTTTCCACCA-TTTTAATAGAATCAAAGTTTATCTC
* **
1573468 TTAAATAAGATAAACAAGAATACTCATTCT
129 TTAAATAAGACAAACAAGAATACTCATAAT
* * * * * * * * * * *
1573498 CA-TCCT-GTTCTTTTCAGGATTAGGCACCATAAATATAGT-CTTCTCATTAGGATACACGATAT
1 -AGTCTTCATTCTTTTCAAGATTAGGAACCACAAACACATTCCCT-TCATTAGGATACATGACAT
* * * ** * * * *
1573560 TGATGCTTTCGT-TTCGCAA-GAATGGCTTTT-TAACCATCAATATTT-GTA-AAGTCTAAGGTT
64 TGAAGCTTTGGTGTT-GCAAGGAA-AGCTTTTCTTTCCA-CCAT-TTTAATAGAA-TCAAAGTTT
* ** * * * * *
1573620 GTGACTCAAATGAGACAAACATGGATTCT-AGTAAT
124 ATCTCTTAAATAAGACAAACAAGAATACTCA-TAAT
*** * * * * *
1573655 -GATCTTCATTCTTTTGGTGATTAGGCACTACAAACACATTCTCC-TCAATAGGATAAATGATAT
1 AG-TCTTCATTCTTTTCAAGATTAGGAACCACAAACACATTC-CCTTCATTAGGATACATGACAT
* * * * * * * * ** * *
1573718 TGATGATTTTGTTTTGCATGAAAATCTTTTCTTTGCC-CTATTTTCCTTAAAATCAAAGTTCATC
64 TGAAGCTTTGGTGTTGCAAGGAAAGCTTTTCTTT-CCACCATTTT-AATAGAATCAAAGTTTATC
* * * ** * *
1573782 -CTTTAAAGAAGGCAAGCCTCG-ATTCTCGTAAT
127 TC-TTAAATAAGACAA-ACAAGAATACTCATAAT
* * *
1573814 AGTCTTCATTCTTTTCAAGATTTGGAAGCCA-AAACACATTCCCTTCATTAGGGTAAATGACATT
1 AGTCTTCATTCTTTTCAAGATTAGGAA-CCACAAACACATTCCCTTCATTAGGATACATGACATT
* * * * * *
1573878 GATGCTTTGGGGTTGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTC
65 GAAGCTTTGGTGTTGCAAGGAAAGCTTTTCTTTCCACC-ATTTTAATAGAATCAAAGTTTATCTC
* * *
1573943 TTAAATATGACAAACATGAATACTCATACT
129 TTAAATAAGACAAACAAGAATACTCATAAT
* ** * * * * * ** * * * * *
1573973 AATCGCCGTTCTTTTCAGGATTTGGCACCACATAGTC-TT--C-TCGTTCGAATACATCATATTG
1 AGTCTTCATTCTTTTCAAGATTAGGAACCACAAACACATTCCCTTCATTAGGATACATGACATTG
* * ** * *
1574034 ATGCTTTGGTTTTGCAA-GAAAGGC-TTT-TTTCTCACCAATTTTTGTA-AAGTCTAAGTTTGTG
66 AAGCTTTGGTGTTGCAAGGAAA-GCTTTTCTTTC-CACC-ATTTTAATAGAA-TCAAAGTTTAT-
* * *
1574095 C-CTCAAA-AGAGACAAACATA-AATTCT-AGTTAT
126 CTCTTAAATA-AGACAAACA-AGAATACTCA-TAAT
** * * * * * *
1574127 -GATCTTCATTCATTTT-GTGATTAGGTACTATAAACACATTCTGC-TCATTAGGATAAATGATA
1 AG-TCTTCATTC-TTTTCAAGATTAGGAACCACAAACACATTC-CCTTCATTAGGATACATGACA
* * * * * * * ** * * *
1574189 TTGATGTTTTGCTTTTGCATGGAAATCTTTT-TTTGCC-CTATTTTCCTTAAAATCAAAGATCAT
63 TTGAAGCTTTGGTGTTGCAAGGAAAGCTTTTCTTT-CCACCATTTT-AATAGAATCAAAGTTTAT
* * * ** *
1574252 AC-CATAAATCAGACAAGCTTCG-ATTCTCATAAT
126 -CTCTTAAATAAGACAAAC-AAGAATACTCATAAT
*
1574285 AGTC-TCATTCTTTTCAAGATTAGGAAGCCA-AAACACATTCCCTTCATTAGGATACATGATATT
1 AGTCTTCATTCTTTTCAAGATTAGGAA-CCACAAACACATTCCCTTCATTAGGATACATGACATT
* * * * * *
1574348 GATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTACACCGTTTTTGATAGAATCAAAGTTTGTCTC
65 GAAGCTTTGGTGTTGCAAGGAAAGCTTTTCTTTCCACC-ATTTTAATAGAATCAAAGTTTATCTC
1574413 TT
129 TT
1574415 TAGTGATTAT
Statistics
Matches: 1009, Mismatches: 292, Indels: 183
0.68 0.20 0.12
Matches are distributed among these distances:
153 8 0.01
154 64 0.06
155 38 0.04
156 15 0.01
157 179 0.18
158 343 0.34
159 325 0.32
160 37 0.04
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (158 bp):
AGTCTTCATTCTTTTCAAGATTAGGAACCACAAACACATTCCCTTCATTAGGATACATGACATTG
AAGCTTTGGTGTTGCAAGGAAAGCTTTTCTTTCCACCATTTTAATAGAATCAAAGTTTATCTCTT
AAATAAGACAAACAAGAATACTCATAAT
Found at i:1573760 original size:475 final size:473
Alignment explanation
Indices: 1572864--1574414 Score: 2296
Period size: 475 Copynumber: 3.3 Consensus size: 473
1572854 CATCAGTAAC
* * * * * *
1572864 AGTCTCCATTCTTTTCAAGA-TTGAGAAACGAAAATACATTCCCTTCATTAGGATGCGTGACATT
1 AGTCTTCATTCTTTTCAAGATTTG-GAAGCCAAAACACATTCCCTTCATTAGGATACATGACATT
*
1572928 GAAGCTTTGGTGTTGCAAGGAAAGCTTTTCTTTCCACCATTTTTAATAGAATCAAAGTTTATCTC
65 GAAGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTAATAGAATCAAAGTTTATCTC
* *
1572993 TTAAATAAGACAAACAAGAATACTCATTCTAATCCTATTCTTTTTAGGATTAGGCACCATAAATA
130 TTAAATAAGACAAACAAGAATACTCATTCTAATCCTGTTCTTTTCAGGATTAGGCACCATAAATA
* * *
1573058 TAGTCTTCTCATTAGGATACATGATATTGATGCTTTCGTTTCACAAGAATGGCTTTTTTCCCATC
195 TAGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAATGGC-TTTTTACCATC
* *
1573123 AATATTTGTAAAGTCTAAGGTTGTGACTCAAATGAGACAAACATGGATTTTAGTAATGATCTTAA
259 AATATTTGTAAAGTCTAAGGTTGTGACTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCA
* *
1573188 TTCTTTTGGCGATTAGGCACTACAAACACATTCTCCTTAATAGGATAAATGATATTGATGATTTT
324 TTCTTTTGGTGATTAGGCACTACAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTT
*
1573253 TTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAG
389 GTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAG
1573318 GCAAGTCTCGATTCTCATAAT
454 GCAAG-CTCGATTCTCATAAT
*
1573339 AGTCTTCATTCTTTTCAAGATTTGGAAGCCAAAACACATTCCCTTCATTAGGATGCATGACATTG
1 AGTCTTCATTCTTTTCAAGATTTGGAAGCCAAAACACATTCCCTTCATTAGGATACATGACATTG
* * *
1573404 AAGCTTTGGTGTTGCAAGGAAAGCTTTTCTTTCCACCACTTTTAATAGAATCAAAATTTATCTCT
66 AAGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTAATAGAATCAAAGTTTATCTCT
* *
1573469 TAAATAAGATAAACAAGAATACTCATTCTCATCCTGTTCTTTTCAGGATTAGGCACCATAAATAT
131 TAAATAAGACAAACAAGAATACTCATTCTAATCCTGTTCTTTTCAGGATTAGGCACCATAAATAT
1573534 AGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAATGGCTTTTTAACCATCA
196 AGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAATGGCTTTTT-ACCATCA
1573599 ATATTTGTAAAGTCTAAGGTTGTGACTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCAT
260 ATATTTGTAAAGTCTAAGGTTGTGACTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCAT
1573664 TCTTTTGGTGATTAGGCACTACAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTG
325 TCTTTTGGTGATTAGGCACTACAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTG
* *
1573729 TTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAAGAAGG
390 TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGG
*
1573794 CAAGCCTCGATTCTCGTAAT
455 CAAG-CTCGATTCTCATAAT
* *
1573814 AGTCTTCATTCTTTTCAAGATTTGGAAGCCAAAACACATTCCCTTCATTAGGGTAAATGACATTG
1 AGTCTTCATTCTTTTCAAGATTTGGAAGCCAAAACACATTCCCTTCATTAGGATACATGACATTG
* * * * *
1573879 ATGCTTTGGGGTTGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCT
66 AAGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTAATAGAATCAAAGTTTATCTCT
* * * * * *
1573944 TAAATATGACAAACATGAATACTCATACTAATCGCCGTTCTTTTCAGGATTTGGCACC----ACA
131 TAAATAAGACAAACAAGAATACTCATTCTAATC-CTGTTCTTTTCAGGATTAGGCACCATAAATA
* * * * * * * *
1574005 TAGTCTTCTCGTTCGAATACATC-ATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTTTCTCAC
195 TAGTCTTCTCATTAGGATACA-CGATATTGATGCTTTCGTTTCGCAAGAATGGCTTTTTAC-CAT
* * * * ** *
1574069 CAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAAAGAGACAAACATAAATTCTAGTTATGATCTTC
258 CAATATTTGTAAAGTCTAAGGTTGTGACTCAAATGAGACAAACATGGATTCTAGTAATGATCTTC
* * * *
1574134 ATTCATTTT-GTGATTAGGTACTATAAACACATTCTGCTCATTAGGATAAATGATATTGATG-TT
323 ATTC-TTTTGGTGATTAGGCACTACAAACACATTCTCCTCAATAGGATAAATGATATTGATGATT
* *
1574197 TTGCTTTTGCATGGAAATCTTTT-TTTGCCCTATTTTCCTTAAAATCAAAGATCATACC-ATAAA
387 TTG-TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT-CCTTTAAA
* *
1574260 TCAGACAAGCTTCGATTCTCATAAT
450 TAAGGCAAGC-TCGATTCTCATAAT
* *
1574285 AGTC-TCATTCTTTTCAAGATTAGGAAGCCAAAACACATTCCCTTCATTAGGATACATGATATTG
1 AGTCTTCATTCTTTTCAAGATTTGGAAGCCAAAACACATTCCCTTCATTAGGATACATGACATTG
* * * * *
1574349 ATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTACACCGTTTTTGATAGAATCAAAGTTTGTCTCT
66 AAGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTAATAGAATCAAAGTTTATCTCT
1574414 T
131 T
1574415 TAGTGATTAT
Statistics
Matches: 993, Mismatches: 74, Indels: 23
0.91 0.07 0.02
Matches are distributed among these distances:
470 121 0.12
471 64 0.06
472 184 0.19
473 5 0.01
474 5 0.01
475 589 0.59
476 25 0.03
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (473 bp):
AGTCTTCATTCTTTTCAAGATTTGGAAGCCAAAACACATTCCCTTCATTAGGATACATGACATTG
AAGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTAATAGAATCAAAGTTTATCTCT
TAAATAAGACAAACAAGAATACTCATTCTAATCCTGTTCTTTTCAGGATTAGGCACCATAAATAT
AGTCTTCTCATTAGGATACACGATATTGATGCTTTCGTTTCGCAAGAATGGCTTTTTACCATCAA
TATTTGTAAAGTCTAAGGTTGTGACTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATT
CTTTTGGTGATTAGGCACTACAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTGT
TTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGC
AAGCTCGATTCTCATAAT
Found at i:1577052 original size:9 final size:9
Alignment explanation
Indices: 1577038--1577076 Score: 53
Period size: 9 Copynumber: 4.3 Consensus size: 9
1577028 TCAACCATCA
1577038 AAGATGATG
1 AAGATGATG
1577047 AAGATGATG
1 AAGATGATG
*
1577056 ATGATGATG
1 AAGATGATG
1577065 ATA-ATGATG
1 A-AGATGATG
1577074 AAG
1 AAG
1577077 TTGACTCGGA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
8 1 0.04
9 25 0.96
ACGTcount: A:0.44, C:0.00, G:0.31, T:0.26
Consensus pattern (9 bp):
AAGATGATG
Found at i:1577055 original size:3 final size:3
Alignment explanation
Indices: 1577040--1577074 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
1577030 AACCATCAAA
* *
1577040 GAT GAT GAA GAT GAT GAT GAT GAT GAT AAT GAT GA
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GA
1577075 AGTTGACTCG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.40, C:0.00, G:0.31, T:0.29
Consensus pattern (3 bp):
GAT
Found at i:1578747 original size:12 final size:12
Alignment explanation
Indices: 1578730--1578757 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
1578720 ATTTCTTAAG
1578730 AATTTAGGGTAT
1 AATTTAGGGTAT
1578742 AATTTAGGGTAT
1 AATTTAGGGTAT
1578754 AATT
1 AATT
1578758 CTTGAAGAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.36, C:0.00, G:0.21, T:0.43
Consensus pattern (12 bp):
AATTTAGGGTAT
Found at i:1586946 original size:159 final size:159
Alignment explanation
Indices: 1581687--1621218 Score: 5748
Period size: 159 Copynumber: 250.3 Consensus size: 159
1581677 ATCCTTTGCA
* * ** * * ** * * *
1581687 GAATTAGGCACCATAAACATAGTCTTTTAATTAGGATAGACAATATTGATGCTTTAGTTTCACAA
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAA
* * * ** ** * *
1581752 GAAAGGCA--TTTTCCCACCAAATTTCGTAAAGTTTAAGTTTGTGCCTCAAATGAGACAAACATA
66 GAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACATG
*
1581815 GATTCTAGTAATGATCTTCATTCATTTTG
131 GATTCTAGTAATGATCTCCATTCATTTTG
* *** * * ** * *
1581844 TG-ATTGGGCATTGTAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCA
1 -GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * ** ** * * *
1581908 TGAGAA-TC-TTTTCTTTTC-CTTATTTTCCTTCAAA-TTAAAGTTCATACCTTAAATAAGACAA
65 AGA-AAGGCATTTT-TTTCCACCAATTTT-AGT-AAAGTCAAAGTTCATGCCTTAAATGAGACAA
* * * *
1581969 ACATTGATTCTCGTAAT-AGTCTCCATTTATTTTC
126 ACATGGATTCTAGTAATGA-TCTCCATTCATTTTG
* * * * * * * * * *
1582003 AAGACTGGGAAGCCAAAAACACATTC-CCTTTATTAGGATAAATGACATTGATGCTTTGGTGTCA
1 GA-ATTAGGCA-CCATAAACACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGTCTCG
* * * * *
1582067 CAAGAAAAGCTATTCTTTT-CACC-GTTTTTGATAGAA-TCAAAGTT--TGTCTCTTAAA-AATG
63 CAAGAAAGGC-ATTTTTTTCCACCAATTTTAG-TA-AAGTCAAAGTTCATG-C-CTTAAATGA-G
** * * * * *
1582126 ACAAACATTAATACTCA-TACTAATCCCCGTTC-TTTTCAG
122 ACAAACATGGATTCT-AGTAATGATCTCCATTCATTTT--G
** * * *
1582165 G-ATTAGGCACCATAAACGTAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAA
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAA
* * * *
1582229 GAAAGGCA-TTTTTCCCACCAATTTTAGTAAAATCTAAGTTCATGCCTCAAATGAGACAAACATG
66 GAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACATG
*
1582293 GATTCTAGTAATGATCTTCATT-ATTTTG
131 GATTCTAGTAATGATCTCCATTCATTTTG
** * * ** * *
1582321 TG-ATTAGGCACTGTAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTTTGC
1 -GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATG-CTTTGGTCTCGC
** * * * ** * * * *
1582385 TTGGAAA-TCCTTTCTTTT-C-CCTATTTTCCTTTAAA-TTAAAGTTCATACCTTAAATAAGGCA
64 -AAGAAAGGCATTT-TTTTCCACCAATTTT--AGTAAAGTCAAAGTTCATGCCTTAAATGAGACA
* * * * *
1582446 AGCATCGATTCTTGTAAT-AGCCTCCATTC-TTTTC
125 AACATGGATTCTAGTAATGA-TCTCCATTCATTTTG
* * * * * * * * *
1582480 AAGACTGGGAAGCCCA-AAACACTTTC-CCTTCATTGGGATAAATGACATTGATGCTTTGGTGTC
1 GA-ATTAGGCA--CCATAAACACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGTCTC
* * * * *
1582543 GCAAGAAAAGC-TTTTCTTTTCACC-ATTTCT-GATAAAATCAAAATT--TGTCTTTTAAAT-AT
62 GCAAGAAAGGCATTTT-TTTCCACCAATTT-TAG-TAAAGTCAAAGTTCATG-C-CTTAAATGA-
* * * * * *
1582602 GACAAACATGTATACTCGTACTAATC-CCTGTTC-TTTTCAG
121 GACAAACATGGATTCTAGTAATGATCTCC-ATTCATTTT--G
* * * * *
1582642 GAA-TAAGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGT-TACGCA
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCT-CGCA
* ** ** * *
1582705 AGAAAGGCA-TTTTTCCCACCAATTTTTCTAAAGTGTAAGTTCATGCCTCAAATGAGACAAATAT
65 AGAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACAT
*
1582769 GGATTCTAGTAATGATCTTCATTCATTTTG
130 GGATTCTAGTAATGATCTCCATTCATTTTG
* * * * * * ** * *
1582799 TG-ATTACGCACTATGAACACATTCTTCTCATTAGGGA-AAATGAT-TTGA-GTATTTTCTTTTG
1 -GAATTAGGCACCATAAACACATTCTCCTCATTA-GGATACATGATATTGATG-CTTTGGTCTCG
* * * * * * ** * * * *
1582860 CATGGAAA-TCCTTTCTTTGC-CCTATTTTCCTTTACA-TCAAAGTTCATACCTTAAATAAGGCA
63 CA-AGAAAGGCATTTTTTTCCACCAATTTT--AGTAAAGTCAAAGTTCATGCCTTAAATGAGACA
* ** * * *
1582922 AGGAC-T-AATTCTTTTAA-CAGTATCCATTC-TTTTC
125 A--ACATGGATTCTAGTAATGA-TCTCCATTCATTTTG
* * * * * * * * * *
1582956 AAGACTGGGAAGCCAAAAATACTTTC-CCTTCTTTAGGATACATGACATTGATGCTTTGGTGTCG
1 GA-ATTAGGCA-CCATAAACACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGTCTCG
* * * *
1583020 CGAGAAACGC-TTTTCTTTCCACC-GTTTTTG-AAAGAATCAAAGTT--TGTCTCTTAAAT-ACG
63 CAAGAAAGGCATTTT-TTTCCACCAATTTTAGTAAAG--TCAAAGTTCATG-C-CTTAAATGA-G
* * * * * * *
1583079 ACAAACATGTATACTCA-TACTAACCCCCATTC-TTGTCAG
122 ACAAACATGGATTCT-AGTAATGATCTCCATTCATT-T-TG
* * * * * * * *
1583118 G-ATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTGTAGTTTTGCAA
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAA
* * *
1583182 GAAAGACA-TTTTTCCCACCAATTTCT--TAAAGTCAAAGTTCGTGCC-T---T---ACAAACAT
66 GAAAGGCATTTTTTTCCACCAATTT-TAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACAT
**
1583237 GGATTCTAGTAATGATCTTTATTCATTTTG
130 GGATTCTAGTAATGATCTCCATTCATTTTG
** * * * * * * *
1583267 TG-ATTAGGCACTGTAAATACACTCTCCTCATTAGGATAAATGATATTGATGATCTT-CTTTTGC
1 -GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCT-TTGGTCTCGC
* * * * ** * *
1583330 ATG---GGAATTTTTTCTTTGC-CCTATTTTCCTTACAA-TCAAAGTTCATACCTTAAATAAGAC
64 AAGAAAGGCA--TTTT-TTTCCACCAATTTT-AGTA-AAGTCAAAGTTCATGCCTTAAATGAGAC
* * * * * *
1583390 AAGCATCGATCCTTGTAA-CAGTCTCCATTC-TTTTC
124 AAACATGGATTCTAGTAATGA-TCTCCATTCATTTTG
* * * * * * * *
1583425 AAGACTAGGAAGCCA-AAAGCACATTC-CTTTCAGTAGGATACATGACATTGAAGCTTTGGTGTC
1 GA-ATTAGGCA-CCATAAA-CACATTCTC-CTCATTAGGATACATGATATTGATGCTTTGGTCTC
* * * * * * *
1583488 GCGAGAAATG-TTTTTCTTTTCA-CTATTTT-TTACAGAATCAAAGTT--TGCCTCTTAAAT-AT
62 GCAAGAAAGGCATTTT-TTTCCACCAATTTTAGTA-A-AGTCAAAGTTCATG-C-CTTAAATGA-
* * ** * * * *
1583547 GAAAAACATGAATAATACTCACACTAATGC-CCA-TCCTTTTC
121 GACAAACATGGATTCTAGT-A-A-TGAT-CTCCATTCATTTTG
* * * * * *
1583588 AAGATTAGGCACCATAAACATAGTCTTCC-CATTAGGATACACGACATTGATGCTTTGGTTTCGC
1 GA-ATTAGGCACCATAAACACATTC-TCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGC
* * * * * * * *
1583652 AAGAAAGGTA-TTTTTCCCACCAATTTTTGTAAAGTCTATGTTCGTGCCTCAAATGAAACAAACA
64 AAGAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACA
* *
1583716 TGGATTCTAGTAATGATCTTCATCCATTTTG
129 TGGATTCTAGTAATGATCTCCATTCATTTTG
* * ** * *
1583747 TG-ATTAGGCA-CAGTAAACACATTCTCCTCATTAGGATAGATGATATTGATGATTTTCTTTTGC
1 -GAATTAGGCACCA-TAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGC
* * * * * * ** * **
1583810 ATGGGAA-TCTTTTCTTTTCC-CTATTTTTCTTCAAA-TCAAAGTTCATACCTTAAACAAGACAA
64 A-AGAAAGGCATTT-TTTTCCACCAATTTTAGT-AAAGTCAAAGTTCATGCCTTAAATGAGACAA
* * * * *
1583872 GCATCGATTCTTGTAA-CAGTCTCCATTC-TTTTC
126 ACATGGATTCTAGTAATGA-TCTCCATTCATTTTG
* * * * * * * * * *
1583905 AAGACTAGGAAGCAAAAAGCACATTC-CCTTCCTTAGG----AGGACATTGAAGCTTTGGTGTCG
1 GA-ATTAGGCACCATAAA-CACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGTCTCG
* * * * *
1583965 CGAGAAATGC-TTTTCTTTTCACC-GTTTTTGATAGAA-TCAAAGTT--TGCTTCTTAAAT-ATG
63 CAAGAAAGGCATTTT-TTTCCACCAATTTTAG-TA-AAGTCAAAGTTCATGC--CTTAAATGA-G
* * ** * * *
1584024 AAAAACATGAATAATACTCACACTGATGC-CCA-TCCTTTTCA
122 ACAAACATGGATTCTAGT-A-A-TGAT-CTCCATTCATTTT-G
* * * * * *
1584065 GAATTAGGCACCGTAAACATAGTCTTCTCATTAGGATACATGACATTGATGCTTTGGTTTCGCAA
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAA
* * * * *** * *
1584130 GAAAGGTAATTTTTCCCACCAATTTTTGTAAAGTCTTTGTTCATGACC-GAAATGAAACAAACAT
66 GAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATG-CCTTAAATGAGACAAACAT
*
1584194 GGATTCTAGTAATGATCTTCATTCATTTTG
130 GGATTCTAGTAATGATCTCCATTCATTTTG
* * * * * * ** * * *
1584224 TG-ATTAGGCACAATAAACACATTCTCCTCATTAGGATAAATAATATTCACGATTTTCTTTTGCG
1 -GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * ** * * * **
1584288 TGAGAA-TC-TTTTCTTTGC-CCTATTTTCCTTCAAA-TCAAAGTTCATACCTTATATAAGGTAA
65 AGA-AAGGCATTTT-TTTCCACCAATTTT-AGT-AAAGTCAAAGTTCATGCCTTAAATGAGACAA
* * * *
1584349 GCATCGATTCTCA-TAAT-AGTTTCCATTC-TTTTC
126 ACATGGATTCT-AGTAATGA-TCTCCATTCATTTTG
* * * * * * *
1584382 AAGACTAGGAAGCCAAAAACACATTC-CCTTCATTAGGAAACATGACATTGATGCTTT-GTGGTC
1 GA-ATTAGGCA-CCATAAACACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGT-CTC
* * * * *
1584445 ACAAGAAAAGC-TTTTCTTTCCACC-GTTTTTGATAGAA-TCCAAGTT--TGTCTCTTAAAT-AT
62 GCAAGAAAGGCATTTT-TTTCCACCAATTTTAG-TA-AAGTCAAAGTTCATG-C-CTTAAATGA-
* * * * *
1584504 GACAAACATGAATACTCA-TACA-AATCCTCACCTT--TTTCAG
121 GACAAACATGGATTCT-AGTA-ATGAT-CTC-CATTCATTT-TG
** * ** * * ** * *
1584544 G-ATTAGGCACCATAAACGTAGTCTTTTAATTACGATACGCGATATTCG-TGCTTTAGTTTCGCA
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATT-GATGCTTTGGTCTCGCA
* * * * ** * *
1584607 AGAAAGTCA-TTTTTCCCACCAAATTTCGTAAAGTTTAAGTTCGTGCCTCAAATGAGACAAACAT
65 AGAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACAT
* * * * *
1584671 AGAATCTAGTAATGATTTTCATTCAATTTG
130 GGATTCTAGTAATGATCTCCATTCATTTTG
* * * ** * *
1584701 TG-A-TA-GCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCA
1 -GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * ** ** *
1584763 TTGGAA-TC-TTTTCTTTGC-CCTGTTTTCCTTCAAA-TCAAAGTTCATACCTTAAAT-ACGACA
65 -AGAAAGGCATTTT-TTTCCACCAATTTT-AGT-AAAGTCAAAGTTCATGCCTTAAATGA-GACA
* * * * * *
1584823 AGCATCGATTCTCGTAA-CAGTCTCCTTTC-TTTTC
125 AACATGGATTCTAGTAATGA-TCTCCATTCATTTTG
* * * * ** * * *
1584857 AAGATTGGGAAGCCCA-AAAC-CTTTC-CCTCCATCGGGATAAATGACATTGATGCTTTGGTATC
1 GA-ATTAGGCA--CCATAAACACATTCTCCT-CATTAGGATACATGATATTGATGCTTTGGTCTC
* * * * *
1584919 ACAAGAAAAGC-TTTTCTTTTCACC-ATTTTTGATAGAA-TCAAAGTT--TGTCTTCTAAAT-AC
62 GCAAGAAAGGCATTTT-TTTCCACCAATTTTAG-TA-AAGTCAAAGTTCATG-CCT-TAAATGA-
* * * * * * *
1584978 AACAAACAAGTAATGTATACTCATACTAATC-CCTGTTC-TTTTCAG
121 GACAAACATG-GAT-TCTAGT-A-A-TGATCTCC-ATTCATTTT--G
* * ** ** *
1585023 G-ATTAGACACCATAAACATAGCCTTGTCATTAGGATACATCATATTGATGCTTTGGT-TACGCA
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCT-CGCA
* *
1585086 AGAAAGGCA--TTTTCCCACCAATTTTAGTAAAGTCTAAGTTCATGCCTTAAATGAGACAAACAT
65 AGAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACAT
*
1585149 GGATTCTAGTAATGATCTTCATTCA--TT-
130 GGATTCTAGTAATGATCTCCATTCATTTTG
** * ** * *
1585176 G-ATTAGGCACTGTAAACACATTCTCCTCATTAGGATA-AGTGATATTGATGAATTTTTTTTTTG
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACA-TGATATTGATG--CTTTGGTCTCG
* * * * * * ** * *
1585239 CATGGAAA-TCCTTTCTTTGC-CCTATTTTCCTTTAAA-TCAAAGTTCATAG-CTTAAATAAGGC
63 CA-AGAAAGGCATTTTTTTCCACCAATTTT--AGTAAAGTCAAAGTTCAT-GCCTTAAATGAGAC
* * ** * *
1585300 AAGCATCGATTCTTCTAA-CAGTCTCCATTC-TTTTC
124 AAACATGGATTCTAGTAATGA-TCTCCATTCATTTTG
* * * * * * *
1585335 AAGACTAGGAAGCCA-AAAGCACATTCGCTTCATTAGGATACATGACATTGATGCTTTGGTGTCG
1 GA-ATTAGGCA-CCATAAA-CACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCG
* * * * ** *
1585399 CGAGAAATGCTTTTTTTTTGCACCGTTTTTAATAGAA-TCAAAGTT--TGTCTCTTAAAT-ATGA
63 CAAGAAAGGC-ATTTTTTTCCACCAATTTTAGTA-AAGTCAAAGTTCATG-C-CTTAAATGA-GA
* * * * *
1585460 AAAACATGAATAC-AGACCCTAATG--C-CCATCCTTTTTAG
123 CAAACATGGATTCTAG----TAATGATCTCCATTCATTTT-G
* * * * * * * * * *
1585498 G-ATTGGGCACCATAAACATAGTCTTCTCGTTAAGATACACGATATTGATGCTATAGTTTCGCAA
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAA
* * * * * * *
1585562 GAAAAG--TTATTTTCCCACCAATTTTTGTAAAGTCTATGTTCGTG-CTTCAAATGAAACAAACA
66 GAAAGGCATT-TTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTT-AAATGAGACAAACA
*
1585624 TGGATTCTAGTAATGATCTTCATTCATTTTG
129 TGGATTCTAGTAATGATCTCCATTCATTTTG
* ** * * ** * ** * *
1585655 TG-ATTAGACACTGTAAACACATTCTCCTCGTTAGGATAAATGATATTTCTGATTTTCTTTTGCA
1 -GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * ** * *
1585719 CGAGAATG--TTTTCTTTGC-CCTATTTTCCTTCAAA-TCAAAGTTCATACCTTAAATAAGACAA
65 AGA-AAGGCATTTT-TTTCCACCAATTTT-AGT-AAAGTCAAAGTTCATGCCTTAAATGAGACAA
* * * *
1585780 GCATCGATTCTCGTAA-CAGTCTCCATTC-TTTT-
126 ACATGGATTCTAGTAATGA-TCTCCATTCATTTTG
* * * * * * * *
1585812 CAA-GACTGCAAAGCCAAAAACACATTCTCTTCATTAGGAAACATGACATTGATGCTTTAGG-GT
1 GAATTA-GGC--A-CCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTT-GGTCT
* * * *
1585875 CACAAGAAAAGC-TTTTCTTTTCACCATTTTTCA-TAGAA-TCAAAGTT--TGTCTCTTAAAT-A
61 CGCAAGAAAGGCATTTT-TTTCCACCAATTTT-AGTA-AAGTCAAAGTTCATG-C-CTTAAATGA
* * * * * *
1585934 TGACAAACATGAATACTCGTACTAAT-T-C-TTGACCTTTTCAG
121 -GACAAACATGGATTCTAGTAATGATCTCCATT--CATTTT--G
* ** * * ** * * * *
1585975 G-ATTAGGCAGCATAAACGTAGTGTTTTAATTAGGATACACGATATTGATGCTTTAGTTTCGC--
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAA
* * * * * * *
1586037 --AAGGCA--TTTTTCCTACCAAATTTCGTGAAGTCTAAGTTCGTGCCTCAAATGAGACAAATAT
66 GAAAGGCATTTTTTTCC-ACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACAT
* * *
1586098 GGATTCCAGAAATGATCTTCATTCATTTTG
130 GGATTCTAGTAATGATCTCCATTCATTTTG
** * * * *
1586128 TG-ATTAGGCACTGTAAATACATTCTCCTCATTAAGATAAATGATATTGATGCTTTGGTGTCGCA
1 -GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * * *
1586192 AGAAAAG-TTTTTCTTTTCACC-GTTTTTGATAGAA-TCAAAGTT--TGTCTCTTAAAT-ATGAT
65 AGAAAGGCATTTT-TTTCCACCAATTTTAG-TA-AAGTCAAAGTTCATG-C-CTTAAATGA-GAC
* * * *
1586251 AAACATGTATACTCA-TACTAATC-CCAGTT-ATTTTCAG
124 AAACATGGATTCT-AGTAATGATCTCCA-TTCATTTT--G
* * * * * *
1586288 G-ATTAGGCACCATAAACATC-GTCTTCTCATTAGGACACATCATATTGATGCTTTGGGCTTGCA
1 GAATTAGGCACCATAAACA-CATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * * * *
1586351 AAAAAGGCA-TTTTTCCCGCCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACTT
65 AGAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACAT
* *
1586415 GGATTCTAGTAACGATCTTCATTCATTTTG
130 GGATTCTAGTAATGATCTCCATTCATTTTG
* * * * * *
1586445 GGATTAGACACTATAAACACATTCTCCTCATTGGGATAAATGATATTGATGC------AT-GC--
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAA
* * * * *** * * * * * *
1586501 -AAA-TCCTTTCTTTTCC-CTACTTTCCTTTACGTCAAAGTTCATGCCATAAATAAGCCAAGCAT
66 GAAAGGCATTT-TTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACAT
* * * * * *
1586563 CGATTCTTGCAACAGA-CTCCAATC-TTTTC
130 GGATTCTAGTAA-TGATCTCCATTCATTTTG
* * * * * * ** * *
1586592 AAGACTAGGAAGCCAAAAACACATTC-CCTTCATTAGGATACATCACATTCCTGCTTTGGTGTTG
1 GA-ATTAGGCA-CCATAAACACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGTCTCG
* * * * * *
1586656 CAAGAAAAGC-TTTTTTTCCATCGATTTGA-TAGAGTCAAAGTT--TGTCTCTTAAA-AACGACA
63 CAAGAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATG-C-CTTAAATGA-GACA
** * * * * *
1586716 AACATTAATACTCA-TACTAATCCCCGTTC-TTTTCAG
125 AACATGGATTCT-AGTAATGATCTCCATTCATTTT--G
* * * *
1586752 G-ATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGACTCGCAA
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAA
* * *
1586816 GAAAGGCATTTTTTTCCATCAATTTTAGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATG
66 GAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACATG
*
1586881 GATTCTAGTAATGATCTTCATTCATTTTG
131 GATTCTAGTAATGATCTCCATTCATTTTG
** * * * * ** * ** *
1586910 GAATTAGGCACTGTAAACACATTCTCCGCATCAGGATAAATGATATTGATGATTTTTTTTTACTT
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGC-A
* * * * * ** * * * * *
1586975 GGAAA-TCATTTCTTTGC-CCTATTTTCCTTTAAA-TGAAAGTTCATACCTTAAATAAGGCAAGC
65 AGAAAGGCATTTTTTTCCACCAATTTT--AGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAAC
* * *
1587037 ATCGATTCTTGTAAT-AGTCTCCATTC-TTTTC
128 ATGGATTCTAGTAATGA-TCTCCATTCATTTTG
* * * * * * *
1587068 AAGACTAGGAAGCCA-AAAGCACAATC-CCTTCATTAGGATACTTGACATTGATGCTTTGGTGTC
1 GA-ATTAGGCA-CCATAAA-CACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGTCTC
* * * **
1587131 GCGAGAAATGC-TTTTCTTTCGACCGTTTTTTA-TAGAA-TCAAAGTT--TGTCTCTTAAAT-AT
62 GCAAGAAAGGCATTTT-TTTCCACC-AATTTTAGTA-AAGTCAAAGTTCATG-C-CTTAAATGA-
* * * * * * * *
1587190 GAAAAACAAGAATACTCA-CACTGATGC-CCA-TCCTTTTC
121 GACAAACATGGATTCT-AGTAATGAT-CTCCATTCATTTTG
* * * * * * *
1587228 AAGATTAGGCACCATAAACATAGTCTTCTTATTAGGATACACGATATTGATGCTTTGGTTTCGCA
1 GA-ATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * * * * *
1587293 AGAAAGGTA-TTTTTCCCACCAATTTTTGTAAAGTCTATGTTCGTGCCTCAAATGAAACAAACAT
65 AGAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACAT
* *
1587357 GGAATCTAGTAATGATCTTCATTCATTTTG
130 GGATTCTAGTAATGATCTCCATTCATTTTG
* ** * * * * ** * *
1587387 TG-ATTAGACACTGTAAACACATTCTCCTCGTTAGGATAAATGATATTTATGATTTTCTTTTGCA
1 -GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * ** * *
1587451 CGAGAA-TC-TTTTCTTTGC-CCTATTTTCCTTCAAA-TCAAAGTTCATACCTTAAATAAGACAA
65 AGA-AAGGCATTTT-TTTCCACCAATTTT-AGT-AAAGTCAAAGTTCATGCCTTAAATGAGACAA
* * * * *
1587512 GCATCGATTCTCGTAA-CAGTCTCCATTC-TTTTC
126 ACATGGATTCTAGTAATGA-TCTCCATTCATTTTG
* * * * * * *
1587545 AAGACT-GCGAAGCCAAAAACACATTC-CCTTCATTAGGAAACATGACATTGATGCTTTAGG-GT
1 GA-ATTAG-GCA-CCATAAACACATTCTCC-TCATTAGGATACATGATATTGATGCTTT-GGTCT
* * * *
1587607 CACAAGAAAAGC-TTTTCTTTTCACCATTTTTCA-TAGAA-TCAAAGTT--TGTCTCTTAAAT-A
61 CGCAAGAAAGGCATTTT-TTTCCACCAATTTT-AGTA-AAGTCAAAGTTCATG-C-CTTAAATGA
* * * * * *
1587666 TGACAAACATGAATACTCA-TACTAATCCTCGA--CCTTTTCAG
121 -GACAAACATGGATTCT-AGTAATGAT-CTCCATTCATTTT--G
** ** * * ** * *
1587707 G-ATTAGGCAGGATAAACGTAGTGTTTTAATTAGGATACATGATATTGATGCTTTAG-CTTCGC-
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTC-TCGCA
* * * * *
1587769 ---AAGGCA-TTTTTCCCACCAAATTTT-GTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATA
65 AGAAAGGCATTTTTTTCCACC-AATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACA
* * * *
1587829 CGGATTCCAGAAATGATCTTCATTCATTTTG
129 TGGATTCTAGTAATGATCTCCATTCATTTTG
** * * * *
1587860 TG-ATTAGGCACTGTAAACACATTCTCCTCATTAAGATAAATGATATTGATGCTTTGGTGTCACA
1 -GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * * *
1587924 AGAAAAG-TTTTTCTTTTCACC-GTTTTTGATAGAA-TCAAAGTT--TGTCTCTTAAAT-ATGAT
65 AGAAAGGCATTTT-TTTCCACCAATTTTAG-TA-AAGTCAAAGTTCATG-C-CTTAAATGA-GAC
* * * *
1587983 AAACATGTATACTCA-TACTAATC-CCAGTT-ATTTTCAG
124 AAACATGGATTCT-AGTAATGATCTCCA-TTCATTTT--G
* * * * * *
1588020 G-ATTAGGCACCATAAACATC-GTCTTCTCATTAGGACACATCATATTGATGCTTTGGGCTTGCA
1 GAATTAGGCACCATAAACA-CATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * * *
1588083 AGAAAGGCA-TTTTTCCCGCCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACTT
65 AGAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACAT
* *
1588147 GGATTCTAGTAACGATCTTCATTCATTTTG
130 GGATTCTAGTAATGATCTCCATTCATTTTG
* * * * * *
1588177 GGATTAGACACTATAAACACATTCTCCTCATTGGGATAAATGATATTGATGC------AT-GC--
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAA
* * * * * *** * * * * * *
1588233 -AAA-TCCTTTCTTTGCC-CTACTTTCCTTTACGTCAAAGTTCATGCCATAAATAAGCCAAGCAT
66 GAAAGGCATTT-TTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACAT
* * * * * *
1588295 CGATTCTTGCAACAGA-CTCCAATC-TTTTC
130 GGATTCTAGTAA-TGATCTCCATTCATTTTG
* * * * * * ** *
1588324 AAGACTAGGAAGCCAAAAACACATTC-CCTTCATTAGGATACATCACATTCCTGCTTTGGTGTCG
1 GA-ATTAGGCA-CCATAAACACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGTCTCG
* * * * * * *
1588388 CAAGAAAAGCTTTTTTTTCCATCGATTTGA-TAGAGTCAAAGTT--TGTCTCTTAAA-AACGACA
63 CAAGAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATG-C-CTTAAATGA-GACA
** * * * * *
1588449 AACATTAATACTCA-TACTAATCCCCGTTC-TTTTCAG
125 AACATGGATTCT-AGTAATGATCTCCATTCATTTT--G
* * * * *
1588485 G-ATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGACTCCCAA
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAA
* * *
1588549 GAAAGGCATTTTTTTCCATCAATTTTAGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATG
66 GAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACATG
* *
1588614 GATTATAGTAATGATCTTCATTCATTTTG
131 GATTCTAGTAATGATCTCCATTCATTTTG
** * * ** * ** *
1588643 GAATTAGGCACTGTAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTTACTT
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGC-A
* * * ** ** * * * *
1588708 GGAAA-TCATTTCTTTGCCA--TGTTTTCCTTTAAA-TCAAAGTTCATACCTTAAATAAGGCAAG
65 AGAAAGGCATTT-TTTTCCACCAATTTT--AGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAA
* * *
1588769 CATCGATTCTTGTAAT-AGTCTCCATTC-TTTTT
127 CATGGATTCTAGTAATGA-TCTCCATTCATTTTG
* * * * * * * *
1588801 AAGACTAGGAAGCCA-AAAGCACAATC-CCTTCATTAGGATACTTGACATTGACGCTTTGGTGTC
1 GA-ATTAGGCA-CCATAAA-CACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGTCTC
* * *
1588864 GCGAGAAATGC-TTTCTGTT-------TTTTA-TAGAA-TCAAAGTT--TGTCTCTTAAAT-ATG
62 GCAAGAAAGGCATTT-TTTTCCACCAATTTTAGTA-AAGTCAAAGTTCATG-C-CTTAAATGA-G
* * * * * * * *
1588916 AAAAACAAGAATACTCA-CACTGATGC-CCA-TCCTTTTC
122 ACAAACATGGATTCT-AGTAATGAT-CTCCATTCATTTTG
* * * * * * *
1588953 AAGATTAGGCACCATAAACATAGTCTTCTTATTAGGATACACGATATTGATGCTTTGGTTTCGCA
1 GA-ATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * * * * * *
1589018 GGAAAGGTA-TTTTTCCCACCAATTTTTGTAAAGTCTATGTTCGTGCCTCAAATGAAACAAACAT
65 AGAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACAT
* * * *
1589082 GGATTCTAATAACGATCTTCATCCATTTTG
130 GGATTCTAGTAATGATCTCCATTCATTTTG
* ** * * ** * *
1589112 TG-ATTAAGCACTGTAAACACATTCTCCTCATTAGGATAGATGATATTGATGATTTTCTTTTTGC
1 -GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATG-CTTTGGTCTCGC
* * * * * ** * *
1589176 ATGGGAA-TC-TTTTGTTTACC-CTATTTTTCTTCAAA-TCAAAGTTCATACCTTAAATAAGACA
64 A-AGAAAGGCATTTT-TTT-CCACCAATTTTAGT-AAAGTCAAAGTTCATGCCTTAAATGAGACA
* * * * * *
1589237 AGCATTGATTCTTGTAA-CAGTCTCTATTC-TTTTC
125 AACATGGATTCTAGTAATGA-TCTCCATTCATTTTG
* * * * * * * *
1589271 AAGACTAGGAAACCA-AAAGCACATTC-CCTTCCTTAGG----AGGACATTGAAGCTTTGGTGTC
1 GA-ATTAGG-CACCATAAA-CACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGTCTC
* * * * **
1589330 GCGAGAAATGCTTTTTTTTTCACCGTTTTTTA-TAGAA-TCAAAGTT--TGCCTCTTAAAT-ATG
62 GCAAGAAAGGCATTTTTTTCCACC-AATTTTAGTA-AAGTCAAAGTTCATG-C-CTTAAATGA-G
* * ** * *
1589390 AAAAACATGAATAATACTCACACTGATGC-CCA-TCCTTTTCAG
122 ACAAACATGGATTCTAGT-A-A-TGAT-CTCCATTCATTTT--G
* * * * * ** * *
1589432 G-ATTAGGCACCGTAAACATAGTCTTCTCATTAGAATACACAACATTGATGCTTTGGTTTCGCAA
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAA
* * * * *** * ** *
1589496 GAAAGGTAATTTTTCCCACCAATTTTTGTAAAGTCTTTGTTCGTGCCCCAAATGAAACAAACATG
66 GAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACATG
* * *
1589561 GATTCTAGTAATGATATTCATTCATTTTAT
131 GATTCTAGTAATGATCTCCATTCATTTT-G
* * * * * ** * *
1589591 G-ATTAGGCACAATAAACACATTCTCCTCATTAGGATAAATAATATTCATGATTTTCTTTTGCAT
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA-
* * * * * ** * * * * * * * *
1589655 GGGAA-TC-TTTTCTTTGC-CCTATTTTCCTTCAATTCTAAGTTCATACCTTATATAAGGCAAGC
65 AGAAAGGCATTTT-TTTCCACCAATTTT-AGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAAC
* *
1589717 ATCGATTCTCA-TAAT-AGTCTCCATTC-TTTTC
128 ATGGATTCT-AGTAATGA-TCTCCATTCATTTTG
* * * * * * * * * *
1589748 AAGACTAGGAAGCAAAAAGCACATTC-CCTTCCTTAGG----AGGACATTGAAGCTTTGGTGTCG
1 GA-ATTAGGCACCATAAA-CACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGTCTCG
* * * * *
1589808 CGAGAAATGC-TTTTCTTTTCACC-GTTTTTGATAGAA-TCAAAGTT--TGCTTCTTAAAT-ATG
63 CAAGAAAGGCATTTT-TTTCCACCAATTTTAG-TA-AAGTCAAAGTTCATGC--CTTAAATGA-G
* * ** * * *
1589867 AAAAACATGAATAATACTCACACTGATGC-CCA-TCCTTTTCA
122 ACAAACATGGATTCTAGT-A-A-TGAT-CTCCATTCATTTT-G
* * * * * *
1589908 GAATTAGGCACCGTAAACATAGTCTTCTCATTAGGATACATGACATTGATGCTTTGGTTTCGCAA
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAA
* * * * *** * * *
1589973 GAAAGGTAATTTTTCCCACCAATTTTTGTAAAGTCTTTGTTCATGACTGAAATGAAACAAACATG
66 GAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACATG
*
1590038 GATTCTAGTAATGATCTTCATTCATTTTG
131 GATTCTAGTAATGATCTCCATTCATTTTG
* * * * * * ** * * *
1590067 TG-ATTAGGCACAATAAACACATTCTCCTCATTAGGATAAATAATATTCACGATTTTCTTTTGCG
1 -GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * ** * * * **
1590131 TGAGAA-TC-TTTTCTTTGC-CCTATTTTCCTTCAAA-TCAAAGTTCATACCTTATATAAGGTAA
65 AGA-AAGGCATTTT-TTTCCACCAATTTT-AGT-AAAGTCAAAGTTCATGCCTTAAATGAGACAA
* * * *
1590192 GCATCGATTCTCA-TAAT-AGTTTCCATTC-TTTTC
126 ACATGGATTCT-AGTAATGA-TCTCCATTCATTTTG
* * * * * * *
1590225 AAGACTAGGAAGCCAAAAACACATTC-CCTTCATTAGGAAACATGACATTGATGCTTT-GTGGTC
1 GA-ATTAGGCA-CCATAAACACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGT-CTC
* * * * *
1590288 ACAAGAAAAGC-TTTTCTTTCCACC-GTTTTGGATAGAA-TCCAAGTT--TGTCTCTTAAAT-AT
62 GCAAGAAAGGCATTTT-TTTCCACCAATTTTAG-TA-AAGTCAAAGTTCATG-C-CTTAAATGA-
* * * * *
1590347 GACAAACATGAATACTCA-TACA-AATCCTCACCTT--TTTCAG
121 GACAAACATGGATTCT-AGTA-ATGAT-CTC-CATTCATTT-TG
** * ** * * ** * *
1590387 G-ATTAGGCACCATAAACGTAGTCTTTTAATTACGATACGCGATATTCG-TGCTTTAGTTTCGCA
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATT-GATGCTTTGGTCTCGCA
* * * * ** * *
1590450 AGAAAGTCA-TTTTTCCCACCAAATTTCGTAAAGTTTAAGTTCGTGCCTCAAATGAGACAAACAT
65 AGAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACAT
* * * * *
1590514 AGAATCTAGTAATGATTTTCATTCAATTTG
130 GGATTCTAGTAATGATCTCCATTCATTTTG
* * * ** * *
1590544 TG-A-TA-GCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCA
1 -GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * ** ** *
1590606 TTGGAA-TC-TTTTCTTTGC-CCTGTTTTCCTTCAAA-TCAAAGTTCATACCTTAAAT-ACGACA
65 -AGAAAGGCATTTT-TTTCCACCAATTTT-AGT-AAAGTCAAAGTTCATGCCTTAAATGA-GACA
* * * * * *
1590666 AGCATCGATTCTCGTAA-CAGTCTCCTTTC-TTTTC
125 AACATGGATTCTAGTAATGA-TCTCCATTCATTTTG
* * * * ** * * *
1590700 AAGATTGGGAAGCCCA-AAAC-CTTTC-CCTCCATCGGGATAAATGACATTGATGCTTTGGTATC
1 GA-ATTAGGCA--CCATAAACACATTCTCCT-CATTAGGATACATGATATTGATGCTTTGGTCTC
* * * *
1590762 ACAAGAAAAGC-TTTTCCTTT-CACC-ATTTTTGATAGAA-TCAAAGTT--TGTCTTCTAAAT-A
62 GCAAGAAAGGCATTTT--TTTCCACCAATTTTAG-TA-AAGTCAAAGTTCATG-CCT-TAAATGA
* * * * * * *
1590820 CAACAAACAAGTAATGTATACTCATACTAATC-CCTGTTC-TTTTCAG
121 -GACAAACATG-GAT-TCTAGT-A-A-TGATCTCC-ATTCATTTT--G
* * ** ** *
1590866 G-ATTAGACACCATAAACATAGCCTTGTCATTAGGATACATCATATTGATGCTTTGGT-TACGCA
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCT-CGCA
* *
1590929 AGAAAGGCA--TTTTCCCACCAATTTTAGTAAAGTCTAAGTTCATGCCTTAAATGAGACAAACAT
65 AGAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACAT
*
1590992 GGATTCTAGTAATGATCTTCATTCA--TT-
130 GGATTCTAGTAATGATCTCCATTCATTTTG
** * ** * *
1591019 G-ATTAGGCACTGTAAACACATTCTCCTCATTAGGATA-AGTGATATTGATGAATTTTTTTTTTG
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACA-TGATATTGATG--CTTTGGTCTCG
* * * * * * ** * *
1591082 CATGGAAA-TCCTTTCTTTGC-CCTATTTTCCTTTAAA-TCAAAGTTCATAG-CTTAAATAAGGC
63 CA-AGAAAGGCATTTTTTTCCACCAATTTT--AGTAAAGTCAAAGTTCAT-GCCTTAAATGAGAC
* * ** * *
1591143 AAGCATCGATTCTTCTAA-CAGTCTCCATTC-TTTTC
124 AAACATGGATTCTAGTAATGA-TCTCCATTCATTTTG
* * * * * * *
1591178 AAGACTAGGAAGCCA-AAAGCACATTCGCTTCATTAGGATACATGACATTGATGCTTTGGTGTCG
1 GA-ATTAGGCA-CCATAAA-CACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCG
* * * * ** *
1591242 CGAGAAATGCTTTTTTTTTGCACCGTTTTTAATAGAA-TCAAAGTT--TGTCTCTTAAAT-ATGA
63 CAAGAAAGGC-ATTTTTTTCCACCAATTTTAGTA-AAGTCAAAGTTCATG-C-CTTAAATGA-GA
* * * * *
1591303 AAAACATGAATAC-AGACCCTAATG--C-CCATCCTTTTTAG
123 CAAACATGGATTCTAG----TAATGATCTCCATTCATTTT-G
* * * * * * * * * *
1591341 G-ATTGGGCACCATAAACATAGTCTTCTCGTTAAGATACACGATATTGATGCTATAGTTTCGCAA
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAA
* * * * * * *
1591405 GAAAAG--TTATTTTCCCACCAATTTTTGTAAAGTCTATGTTCGTG-CTTCAAATGAAACAAACA
66 GAAAGGCATT-TTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTT-AAATGAGACAAACA
*
1591467 TGGATTCTAGTAATGATCTTCATTCATTTTG
129 TGGATTCTAGTAATGATCTCCATTCATTTTG
* ** * * ** * ** * *
1591498 TG-ATTAGACACTGTAAACACATTCTCCTCGTTAGGATAAATGATATTTCTGATTTTCTTTTGCA
1 -GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * ** * *
1591562 CGAGAATG--TTTTCTTTGC-CCTATTTTCCTTCAAA-TCAAAGTTCATACCTTAAATAAGACAA
65 AGA-AAGGCATTTT-TTTCCACCAATTTT-AGT-AAAGTCAAAGTTCATGCCTTAAATGAGACAA
* * * *
1591623 GCATCGATTCTCGTAA-CAGTCTCCATTC-TTTT-
126 ACATGGATTCTAGTAATGA-TCTCCATTCATTTTG
* * * * * * * *
1591655 CAA-GACTGCAAAGCCAAAAACACATTCTCTTCATTAGGAAACATGACATTGATGCTTTAGG-GT
1 GAATTA-GGC--A-CCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTT-GGTCT
* * * *
1591718 CACAAGAAAAGC-TTTTCTTTTCACCATTTTTCA-TAGAA-TCAAAGTT--TGTCTCTTAAAT-A
61 CGCAAGAAAGGCATTTT-TTTCCACCAATTTT-AGTA-AAGTCAAAGTTCATG-C-CTTAAATGA
* * * * * *
1591777 TGACAAACATGAATACTCGTACTAAT-T-C-TTGACCTTTTCAG
121 -GACAAACATGGATTCTAGTAATGATCTCCATT--CATTTT--G
* ** * * ** * * * *
1591818 G-ATTAGGCAGCATAAACGTAGTGTTTTAATTAGGATACACGATATTGATGCTTTAGTTTCGC--
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAA
* * * * * * *
1591880 --AAGGCA--TTTTTCCTACCAAATTTCGTGAAGTCTAAGTTCGTGCCTCAAATGAGACAAATAT
66 GAAAGGCATTTTTTTCC-ACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACAT
* * *
1591941 GGATTCCAGAAATGATCTTCATTCATTTTG
130 GGATTCTAGTAATGATCTCCATTCATTTTG
** * * * *
1591971 TG-ATTAGGCACTGTAAATACATTCTCCTCATTAAGATAAATGATATTGATGCTTTGGTGTCGCA
1 -GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * * *
1592035 AGAAAAG-TTTTTCTTTTCACC-GTTTTTGATAGAA-TCAAAGTT--TGTCTCTTAAAT-ATGAT
65 AGAAAGGCATTTT-TTTCCACCAATTTTAG-TA-AAGTCAAAGTTCATG-C-CTTAAATGA-GAC
* * * *
1592094 AAACATGTATACTCA-TACTAATC-CCAGTT-ATTTTCAG
124 AAACATGGATTCT-AGTAATGATCTCCA-TTCATTTT--G
* * * * * *
1592131 G-ATTAGGCACCATAAACATC-GTCTTCTCATTAGGACACATCATATTGATGCTTTGGGCTTGCA
1 GAATTAGGCACCATAAACA-CATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * * *
1592194 AGAAAGGCA-TTTTTCCCGCCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACTT
65 AGAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACAT
* * *
1592258 GGATTTTTAGTAACGATCTTCATTCATTTTG
130 GGA-TTCTAGTAATGATCTCCATTCATTTTG
* * * * * *
1592289 GGATTAGACACTATAAACACATTCTCCTCATTTGGATAAATGATATTGATGC------AT-GC--
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAA
* * * * *** * * * * * *
1592345 -AAA-TCCTTTCTTTTCC-CTACTTTCCTTTACGTCAAAGTTCATGCCATAAATAAGCCAAGCAT
66 GAAAGGCATTT-TTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACAT
* * * * * *
1592407 CGATTCTTGCAACAGA-CTCCAATC-TTTTC
130 GGATTCTAGTAA-TGATCTCCATTCATTTTG
* * * * * * ** * *
1592436 AAGACTAGGAAGCCAAAAACACATTC-CCTTCATTAGGATACATCACATTCCTGCTTTGGTGTTG
1 GA-ATTAGGCA-CCATAAACACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGTCTCG
* * * * * *
1592500 CAAGAAAAGC-TTTTTTTCCATCGATTTGA-TAGAGTCAAAGTT--TGTCTCTTAAA-AACGACA
63 CAAGAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATG-C-CTTAAATGA-GACA
** * * * * *
1592560 AACATTAATACTCA-TACTAATCCCCGTTC-TTTTCAG
125 AACATGGATTCT-AGTAATGATCTCCATTCATTTT--G
* * * *
1592596 G-ATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGACTCGCAA
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAA
* * *
1592660 GAAAGGCATTTTTTTCCATCAATTTTAGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATG
66 GAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACATG
* *
1592725 GATTCTACTAATGATCTTCATTCATTTTG
131 GATTCTAGTAATGATCTCCATTCATTTTG
** * * * * * ** * ** *
1592754 GAATTAGGCACTGTAAACACATTATCCGCATCAGGATAAATGATATTGATGATTTTTTTTTACTT
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGC-A
* * * * * ** * * * * *
1592819 GGAAA-TCATTTCTTTGC-CCTATTTTCCTTTAAA-TGAAAGTTCATACCTTAAATAAGGCAAGC
65 AGAAAGGCATTTTTTTCCACCAATTTT--AGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAAC
* * *
1592881 ATCGATTCTTGTAAT-AGTCTCCATTC-TTTTC
128 ATGGATTCTAGTAATGA-TCTCCATTCATTTTG
* * * * * * *
1592912 AAGACTAGGAAGCCA-AAAGCACAATC-CCTTCATTAGGATACTTGACATTGATGCTTTGGTGTC
1 GA-ATTAGGCA-CCATAAA-CACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGTCTC
* * * **
1592975 GCGAGAAATGC-TTTTCTTTCGACCGTTTTTTA-TAGAA-TCAAAGTT--TGTCTCTTAAAT-AT
62 GCAAGAAAGGCATTTT-TTTCCACC-AATTTTAGTA-AAGTCAAAGTTCATG-C-CTTAAATGA-
* * * * * * * *
1593034 GAAAAACAAGAATACTCA-CACTGATGC-CCA-TCCTTTTC
121 GACAAACATGGATTCT-AGTAATGAT-CTCCATTCATTTTG
* * * * * * *
1593072 AAGATTAGGCACCATAAACATAGTCTTCTTATTAGGATACACGATATTGATGCTTTGGTTTCGCA
1 GA-ATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * * * * *
1593137 AGAAAGGTA-TTTTTCCCACCAATTTTTGTAAAGTCTATGTTCGTGCCTCAAATGAAACAAACAT
65 AGAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACAT
* *
1593201 GGAATCTAGTAATGATCTTCATTCATTTTG
130 GGATTCTAGTAATGATCTCCATTCATTTTG
* ** * * * * ** * *
1593231 TG-ATTAGACACTGTAAACACATTCTCCTCGTTAGGATAAATGATATTTATGATTTTCTTTTGCA
1 -GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * ** * *
1593295 CGAGAA-TC-TTTTCTTTGC-CCTATTTTCCTTCAAA-TCAAAGTTCATACCTTAAATAAGACAA
65 AGA-AAGGCATTTT-TTTCCACCAATTTT-AGT-AAAGTCAAAGTTCATGCCTTAAATGAGACAA
* * * * *
1593356 GCATCGATTCTCGTAA-CAGTCTCCATTC-TTTTC
126 ACATGGATTCTAGTAATGA-TCTCCATTCATTTTG
* * * * * * *
1593389 AAGACT-GCGAAGCCAAAAACACATTC-CCTTCATTAGGAAACATGACATTGATGCTTTAGG-GT
1 GA-ATTAG-GCA-CCATAAACACATTCTCC-TCATTAGGATACATGATATTGATGCTTT-GGTCT
* * * *
1593451 CACAAGAAAAGC-TTTTCTTTTCACCATTTTTCA-TAGAA-TCAAAGTT--TGTCTCTTAAAT-A
61 CGCAAGAAAGGCATTTT-TTTCCACCAATTTT-AGTA-AAGTCAAAGTTCATG-C-CTTAAATGA
* * * * * *
1593510 TGACAAACATGAATACTCA-TACTAATCCTCGA--CCTTTTCAG
121 -GACAAACATGGATTCT-AGTAATGAT-CTCCATTCATTTT--G
** ** * * ** * *
1593551 G-ATTAGGCAGGATAAACGTAGTGTTTTAATTAGGATACATGATATTGATGCTTTAG-CTTCGC-
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTC-TCGCA
* * * * *
1593613 ---AAGGCA-TTTTTCCCACCAAATTTT-GTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATA
65 AGAAAGGCATTTTTTTCCACC-AATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACA
* * * *
1593673 CGGATTCCAGAAATGATCTTCATTCATTTTG
129 TGGATTCTAGTAATGATCTCCATTCATTTTG
** * * * *
1593704 TG-ATTAGGCACTGTAAACACATTCTCCTCATTAAGATAAATGATATTGATGCTTTGGTGTCACA
1 -GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * * *
1593768 AGAAAAG-TTTTTCTTTTCACC-GTTTTTGATAGAA-TCAAAGTT--TGTCTCTTAAAT-ATGAT
65 AGAAAGGCATTTT-TTTCCACCAATTTTAG-TA-AAGTCAAAGTTCATG-C-CTTAAATGA-GAC
* * * *
1593827 AAACATGTATACTCA-TACTAATC-CCAGTT-ATTTTCAG
124 AAACATGGATTCT-AGTAATGATCTCCA-TTCATTTT--G
* * * * * *
1593864 G-ATTAGGCACCATAAACATC-GTCTTCTCATTAGGACACATCATATTGATGCTTTGGGCTTGCA
1 GAATTAGGCACCATAAACA-CATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * * * *
1593927 AGAGAGGCA-TTTTTCCCGCCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACTT
65 AGAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACAT
* *
1593991 GGATTCTAGTAACGATCTTCATTCATTTTG
130 GGATTCTAGTAATGATCTCCATTCATTTTG
* * * * * *
1594021 GGATTAGACACTATAAACACATTCTCCTCATTGGGATAAATGATATTGATGC------AT-GC--
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAA
* * * * * *** * * * * * *
1594077 -AAA-TCCTTTCTTTGCC-CTACTTTCCTTTACGTCAAAGTTCATGCCATAAATAAGCCAAGCAT
66 GAAAGGCATTT-TTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACAT
* * * * * *
1594139 CGATTCTTGCAACAGA-CTCCAATC-TTTTC
130 GGATTCTAGTAA-TGATCTCCATTCATTTTG
* * * * * * ** * *
1594168 AAGACTAGGAAGCCAAAAACACATTC-CCTTCATTAGGATACATCACATTCCTACTTTGGTGTCG
1 GA-ATTAGGCA-CCATAAACACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGTCTCG
* * * * * *
1594232 CAAGAAAAGC-TTTTTTTCCATCGATTTGA-TAGAGTCAAAGTT--TGTCTCTTAAA-AACGACA
63 CAAGAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATG-C-CTTAAATGA-GACA
** * * * *
1594292 AACATTAATACTCA-TACTAATC-CTCGTTC-TTTTCAG
125 AACATGGATTCT-AGTAATGATCTC-CATTCATTTT--G
* * * * * *
1594328 G-ATTAGGCCCCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGACTCCCAA
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAA
* * *
1594392 GAAAGGCATTTTTTTCCATCAATTTTAGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATG
66 GAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACATG
* *
1594457 GATTATAGTAATGATCTTCATTCATTTTG
131 GATTCTAGTAATGATCTCCATTCATTTTG
** * * ** * ** *
1594486 GAATTAGGCACTGTAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTTACTT
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGC-A
* * * ** ** * * * *
1594551 GGAAA-TCATTTCTTTGCCA--TGTTTTCCTTTAAA-TCAAAGTTCATACCTTAAATAAGGCAAG
65 AGAAAGGCATTT-TTTTCCACCAATTTT--AGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAA
* * *
1594612 CATCGATTCTTGTAAT-AGTCTCCATTC-TTTTT
127 CATGGATTCTAGTAATGA-TCTCCATTCATTTTG
* * * * * * * *
1594644 AAGACTAGGAAGCCA-AAAGCACAATC-CCTTCATTAGGATACTTGACATTGACGCTTTGGTGTC
1 GA-ATTAGGCA-CCATAAA-CACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGTCTC
* * *
1594707 GCGAGAAATGC-TTTCTGTT-------TTTTA-TAGAA-TCAAAGTT--TGTCTCTTAAAT-ATG
62 GCAAGAAAGGCATTT-TTTTCCACCAATTTTAGTA-AAGTCAAAGTTCATG-C-CTTAAATGA-G
* * * * * * * *
1594759 AAAAACAAGAATACTCA-CACTGATGC-CCA-TCCTTTTC
122 ACAAACATGGATTCT-AGTAATGAT-CTCCATTCATTTTG
* * * * * * * *
1594796 AAGATTAGGCACCATAAACATAGTCTTCTTATTAGGATACACGATATTGATGCTTTAGTTTCGCA
1 GA-ATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * * * * * *
1594861 GGAAAGGTA-TTTTTCCCACCAATTTTTGTAAAGTCTATGTTCGTGCCTCAAATGAAACAAACAT
65 AGAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACAT
* * * *
1594925 GGATTCTAATAACGATCTTCATCCATTTTG
130 GGATTCTAGTAATGATCTCCATTCATTTTG
* ** * * ** * *
1594955 TG-ATTAAGCACTGTAAACACATTCTCCTCATTAGGATAGATGATATTGATGATTTTCTTTTTGC
1 -GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATG-CTTTGGTCTCGC
* * * * * ** * *
1595019 ATGGGAA-TC-TTTTCTTTACC-CTATTTTTCTTCAAA-TCAAAGTTCATACCTTAAATAAGACA
64 A-AGAAAGGCATTTT-TTT-CCACCAATTTTAGT-AAAGTCAAAGTTCATGCCTTAAATGAGACA
* * * * * *
1595080 AGCATTGATTCTTGTAA-CAGTCTCTATTC-TTTTC
125 AACATGGATTCTAGTAATGA-TCTCCATTCATTTTG
* * * * * * * *
1595114 AAGACTAGGAAACCA-AAAGCACATTC-CCTTCCTTAGG----AGGACATTGAAGCTTTGGTGTC
1 GA-ATTAGG-CACCATAAA-CACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGTCTC
* * * * **
1595173 ACGAGAAATGC-TTTTCTTTTCACCGTTTTTTA-TAGAA-TCAAAGTT--TGCCTCTTAAAT-AT
62 GCAAGAAAGGCATTTT-TTTCCACC-AATTTTAGTA-AAGTCAAAGTTCATG-C-CTTAAATGA-
* * ** * *
1595232 GAAAAACATGAATAATACTCACACTGATGC-CCA-TCCTTTTCAG
121 GACAAACATGGATTCTAGT-A-A-TGAT-CTCCATTCATTTT--G
* * * * * ** * *
1595275 G-ATTAGGCACCGTAAACATAGTCTTCTCATTAGAATACACAACATTGATGCTTTGGTTTCGCAA
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAA
* * * * *** * ** *
1595339 GAAAGGTAATTTTTCCCACCAATTTTTGTAAAGTCTTTGTTCGTGCCCCAAATGAAACAAACATG
66 GAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACATG
* *
1595404 GATTCTAGTAATGATATTCATTCATTTTG
131 GATTCTAGTAATGATCTCCATTCATTTTG
* * * * * * ** * * *
1595433 TG-ATTAGGCACAATAAACACATTCTCCTCATTAGGATAAATAATATTCACGATTTTCTTTTGCG
1 -GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * ** * * * **
1595497 TGAGAA-TC-TTTTCTTTGC-CCTATTTTCCTTCAAA-TCAAAGTTCATACCTTATATAAGGTAA
65 AGA-AAGGCATTTT-TTTCCACCAATTTT-AGT-AAAGTCAAAGTTCATGCCTTAAATGAGACAA
* * * *
1595558 GCATCGATTCTCA-TAAT-AGTTTCCATTC-TTTTC
126 ACATGGATTCT-AGTAATGA-TCTCCATTCATTTTG
* * * * * * *
1595591 AAGACTAGGAAGCCAAAAACACATTC-CCTTCATTAGGAAACATGACATTGATGCTTT-GTGGTC
1 GA-ATTAGGCA-CCATAAACACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGT-CTC
* * * * *
1595654 ACAAGAAAAGC-TTTTCTTTCCACC-GTTTTTGATAGAA-TCCAAGTT--TGTCTCTTAAAT-AT
62 GCAAGAAAGGCATTTT-TTTCCACCAATTTTAG-TA-AAGTCAAAGTTCATG-C-CTTAAATGA-
* * * *
1595713 GACAAACATGAATACTCA-TACA-AATC-CTCA--CCTTTTCAG
121 GACAAACATGGATTCT-AGTA-ATGATCTC-CATTCATTTT--G
** * ** * * ** * *
1595752 G-ATTAGGCACCATAAACGTAGTCTTTTAATTACGATACGCGATATTCG-TGCTTTAGTTTCGCA
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATT-GATGCTTTGGTCTCGCA
* * * * ** * *
1595815 AGAAAGTCA-TTTTTCCCACCAAATTTCGTAAAGTTTAAGTTCGTGCCTCAAATGAGACAAACAT
65 AGAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACAT
* * * * *
1595879 AGAATCTAGTAATGATTTTCATTCAATTTG
130 GGATTCTAGTAATGATCTCCATTCATTTTG
* * * ** * *
1595909 TG-A-TA-GCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCA
1 -GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * ** ** *
1595971 TTGGAA-TC-TTTTCTTTGC-CCTGTTTTCCTTCAAA-TCAAAGTTCATACCTTAAAT-ACGACA
65 -AGAAAGGCATTTT-TTTCCACCAATTTT-AGT-AAAGTCAAAGTTCATGCCTTAAATGA-GACA
* * * * * *
1596031 AGCATCGATTCTCGTAA-CAGTCTCCTTTC-TTTTC
125 AACATGGATTCTAGTAATGA-TCTCCATTCATTTTG
* * * * ** * * *
1596065 AAGATTGGGAAGCCCA-AAAC-CTTTC-CCTCCATCGGGATAAATGACATTGATGCTTTGGTATC
1 GA-ATTAGGCA--CCATAAACACATTCTCCT-CATTAGGATACATGATATTGATGCTTTGGTCTC
* * * * *
1596127 ACAAGAAAAGC-TTTTCTTTTCACC-ATTTTTGATAGAA-TCAAAGTT--TGTCTTCTAAAT-AC
62 GCAAGAAAGGCATTTT-TTTCCACCAATTTTAG-TA-AAGTCAAAGTTCATG-CCT-TAAATGA-
* * * * * * *
1596186 AACAAACAAGTAATGTATACTCATACTAATC-CCTGTTC-TTTTCAG
121 GACAAACATG-GAT-TCTAGT-A-A-TGATCTCC-ATTCATTTT--G
* * ** ** *
1596231 G-ATTAGACACCATAAACATAGCCTTGTCATTAGGATACATCATATTGATGCTTTGGT-TACGCA
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCT-CGCA
* *
1596294 AGAAAGGCA--TTTTCCCACCAATTTTAGTAAAGTCTAAGTTCATGCCTTAAATGAGACAAACAT
65 AGAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACAT
*
1596357 GGATTCTAGTAATGATCTTCATTCA--TT-
130 GGATTCTAGTAATGATCTCCATTCATTTTG
** * ** * *
1596384 G-ATTAGGCACTGTAAACACATTCTCCTCATTAGGATA-AGTGATATTGATGAATTTTTTTTTTG
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACA-TGATATTGATG--CTTTGGTCTCG
* * * * * * ** * *
1596447 CATGGAAA-TCCTTTCTTTGC-CCTATTTTCCTTTAAA-TCAAAGTTCATAG-CTTAAATAAGGC
63 CA-AGAAAGGCATTTTTTTCCACCAATTTT--AGTAAAGTCAAAGTTCAT-GCCTTAAATGAGAC
* * ** * *
1596508 AAGCATCGATTCTTCTAA-CAGTCTCCATTC-TTTTC
124 AAACATGGATTCTAGTAATGA-TCTCCATTCATTTTG
* * * * * * *
1596543 AAGACTAGGAAGCCA-AAAGCACATTCGCTTCATTAGGATACATGACATTGATGCTTTGGTGTCG
1 GA-ATTAGGCA-CCATAAA-CACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCG
* * * * ** *
1596607 CGAGAAATGCTTTTTTTTTGCACCGTTTTTAATAGAA-TCAAAGTT--TGTCTCTTAAAT-ATGA
63 CAAGAAAGGC-ATTTTTTTCCACCAATTTTAGTA-AAGTCAAAGTTCATG-C-CTTAAATGA-GA
* * * *
1596668 AAAACATGAATAC-AGACCCTAATG--C-CCA-TCCTTTTAG
123 CAAACATGGATTCTAG----TAATGATCTCCATTCATTTT-G
* * * * * * * * * *
1596705 G-ATTGGGCACCATAAACATAGTCTTCTCGTTAAGATACACGATATTGATGCTATAGTTTCGCAA
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAA
* * * * * * *
1596769 GAAAAG--TTATTTTCCCACCAATTTTTGTAAAGTCTATGTTCGTG-CTTCAAATGAAACAAACA
66 GAAAGGCATT-TTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTT-AAATGAGACAAACA
*
1596831 TGGATTCTAGTAATGATCTTCATTCATTTTG
129 TGGATTCTAGTAATGATCTCCATTCATTTTG
* ** * * ** * ** * *
1596862 TG-ATTAGACACTGTAAACACATTCTCCTCGTTAGGATAAATGATATTTCTGATTTTCTTTTGCA
1 -GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * ** * *
1596926 CGAGAATG--TTTTCTTTGC-CCTATTTTCCTTCAAA-TCAAAGTTCATACCTTAAATAAGACAA
65 AGA-AAGGCATTTT-TTTCCACCAATTTT-AGT-AAAGTCAAAGTTCATGCCTTAAATGAGACAA
* * * *
1596987 GCATCGATTCTCGTAA-CAGTCTCCATTC-TTTT-
126 ACATGGATTCTAGTAATGA-TCTCCATTCATTTTG
* * * * * * * *
1597019 CAA-GACTGCAAAGCCAAAAACACATTCTCTTCATTAGGAAACATGACATTGATGCTTTAGG-GT
1 GAATTA-GGC--A-CCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTT-GGTCT
* * * *
1597082 CACAAGAAAAGC-TTTTCTTTTCACCATTTTTCA-TAGAA-TCAAAGTT--TGTCTCTTAAAT-A
61 CGCAAGAAAGGCATTTT-TTTCCACCAATTTT-AGTA-AAGTCAAAGTTCATG-C-CTTAAATGA
* * * * * *
1597141 TGACAAACATGAATACTCGTACTAAT-T-C-TTGACCTTTTCAG
121 -GACAAACATGGATTCTAGTAATGATCTCCATT--CATTTT--G
* ** * * ** * * * *
1597182 G-ATTAGGCAGCATAAACGTAGTGTTTTAATTAGGATACACGATATTGATGCTTTAGTTTCGC--
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAA
* * * * * * *
1597244 --AAGGCA--TTTTTCCTACCAAATTTCGTGAAGTCTAAGTTCGTGCCTCAAATGAGACAAATAT
66 GAAAGGCATTTTTTTCC-ACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACAT
* * *
1597305 GGATTCCAGAAATGATCTTCATTCATTTTG
130 GGATTCTAGTAATGATCTCCATTCATTTTG
** * * * *
1597335 TG-ATTAGGCACTGTAAATACATTCTCCTCATTAAGATAAATGATATTGATGCTTTGGTGTCGCA
1 -GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * * *
1597399 AGAAAAG-TTTTTCTTTTCACC-GTTTTTGATAGAA-TCAAAGTT--TGTCTCTTAAAT-ATGAT
65 AGAAAGGCATTTT-TTTCCACCAATTTTAG-TA-AAGTCAAAGTTCATG-C-CTTAAATGA-GAC
* * * *
1597458 AAACATGTATACTCA-TACTAATC-CCAGTT-ATTTTCAG
124 AAACATGGATTCT-AGTAATGATCTCCA-TTCATTTT--G
* * * * * *
1597495 G-ATTAGGCACCATAAACATC-GTCTTCTCATTAGGACACATCATATTGATGCTTTGGGCTTGCA
1 GAATTAGGCACCATAAACA-CATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * * *
1597558 AGAAAGGCA-TTTTTCCCGCCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACTT
65 AGAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACAT
* * *
1597622 GGATTTTTAGTAACGATCTTCATTCATTTTG
130 GGA-TTCTAGTAATGATCTCCATTCATTTTG
* * * * * *
1597653 GGATTAGACACTATAAACACATTCTCCTCATTTGGATAAATGATATTGATGC------AT-GC--
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAA
* * * * *** * * * * * *
1597709 -AAA-TCCTTTCTTTTCC-CTACTTTCCTTTACGTCAAAGTTCATGCCATAAATAAGCCAAGCAT
66 GAAAGGCATTT-TTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACAT
* * * * * *
1597771 CGATTCTTGCAACAGA-CTCCAATC-TTTTC
130 GGATTCTAGTAA-TGATCTCCATTCATTTTG
* * * * * * ** * *
1597800 AAGACTAGGAAGCCAAAAACACATTC-CCTTCATTAGGATACATCACATTCCTGCTTTGGTGTTG
1 GA-ATTAGGCA-CCATAAACACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGTCTCG
* * * * * *
1597864 CAAGAAAAGC-TTTTTTTCCATCGATTTGA-TAGAGTCAAAGTT--TGTCTCTTAAA-AACGACA
63 CAAGAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATG-C-CTTAAATGA-GACA
** * * * * *
1597924 AACATTAATACTCA-TACTAATCCCCGTTC-TTTTCAG
125 AACATGGATTCT-AGTAATGATCTCCATTCATTTT--G
* * * *
1597960 G-ATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGACTCGCAA
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAA
* * *
1598024 GAAAGGCATTTTTTTTCCATCAATTTTAGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACAT
66 GAAAGGCA-TTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACAT
*
1598089 GGATTCTAGTAATGATCTTCATTCATTTTG
130 GGATTCTAGTAATGATCTCCATTCATTTTG
** * * * * ** * ** *
1598119 GAATTAGGCACTGTAAACACATTCTCCGCATCAGGATAAATGATATTGATGATTTTTTTTTACTT
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGC-A
* * * * * ** * * * * *
1598184 GGAAA-TCATTTCTTTGC-CCTATTTTCCTTTAAA-TGAAAGTTCATACCTTAAATAAGGCAAGC
65 AGAAAGGCATTTTTTTCCACCAATTTT--AGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAAC
* * *
1598246 ATCGATTCTTGTAAT-AGTCTCCATTC-TTTTC
128 ATGGATTCTAGTAATGA-TCTCCATTCATTTTG
* * * * * * *
1598277 AAGACTAGGAAGCCA-AAAGCACAATC-CCTTCATTAGGATACTTGACATTGATGCTTTGGTGTC
1 GA-ATTAGGCA-CCATAAA-CACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGTCTC
* * * **
1598340 GCGAGAAATGC-TTTTCTTTCGACCGTTTTTTA-TAGAA-TCAAAGTT--TGTCTCTTAAAT-AT
62 GCAAGAAAGGCATTTT-TTTCCACC-AATTTTAGTA-AAGTCAAAGTTCATG-C-CTTAAATGA-
* * * * * * * *
1598399 GAAAAACAAGAATACTCA-CACTGATGC-CCA-TCCTTTTC
121 GACAAACATGGATTCT-AGTAATGAT-CTCCATTCATTTTG
* * * * * * *
1598437 AAGATTAGGCACCATAAACATAGTCTTCTTATTAGGATACACGATATTGATGCTTTGGTTTCGCA
1 GA-ATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * * * * *
1598502 AGAAAGGTA-TTTTTCCCACCAATTTTTGTAAAGTCTATGTTCGTGCCTCAAATGAAACAAACAT
65 AGAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACAT
* *
1598566 GGAATCTAGTAATGATCTTCATTCATTTTG
130 GGATTCTAGTAATGATCTCCATTCATTTTG
* ** * * * * ** * *
1598596 TG-ATTAGACACTGTAAACACATTCTCCTCGTTAGGATAAATGATATTTATGATTTTCTTTTGCA
1 -GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * ** * *
1598660 CGAGAA-TC-TTTTCTTTGC-CCTATTTTCCTTCAAA-TCAAAGTTCATACCTTAAATAAGACAA
65 AGA-AAGGCATTTT-TTTCCACCAATTTT-AGT-AAAGTCAAAGTTCATGCCTTAAATGAGACAA
* * * * *
1598721 GCATCGATTCTCGTAA-CAGTCTCCATTC-TTTTC
126 ACATGGATTCTAGTAATGA-TCTCCATTCATTTTG
* * * * * * *
1598754 AAGACT-GCGAAGCCAAAAACAC-TTC-CCTTCATTAGGAAACATGACATTGATGCTTTAGG-GT
1 GA-ATTAG-GCA-CCATAAACACATTCTCC-TCATTAGGATACATGATATTGATGCTTT-GGTCT
* * * *
1598815 CACAAGAAAAGC-TTTTCTTTTCACCATTTTTCA-TAGAA-TCAAAGTT--TGTCTCTTAAAT-A
61 CGCAAGAAAGGCATTTT-TTTCCACCAATTTT-AGTA-AAGTCAAAGTTCATG-C-CTTAAATGA
* * * * * *
1598874 TGACAAACATGAATACTCA-TACTAATCCTCGA--CCTTTTCAG
121 -GACAAACATGGATTCT-AGTAATGAT-CTCCATTCATTTT--G
** ** * * ** * *
1598915 G-ATTAGGCAGGATAAACGTAGTGTTTTAATTAGGATACATGATATTGATGCTTTAG-CTTCGC-
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTC-TCGCA
* * * * *
1598977 ---AAGGCA-TTTTTCCCACCAAATTTT-GTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATA
65 AGAAAGGCATTTTTTTCCACC-AATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACA
* * * *
1599037 CGGATTCCAGAAATGATCTTCATTCATTTTG
129 TGGATTCTAGTAATGATCTCCATTCATTTTG
** * * * *
1599068 TG-ATTAGGCACTGTAAACACATTCTCCTCATTAAGATAAATGATATTGATGCTTTGGTGTCACA
1 -GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * * *
1599132 AGAAAAG-TTTTTCTTTTCACC-GTTTTTGATAGAA-TCAAAGTT--TGTCTCTTAAAT-ATGAT
65 AGAAAGGCATTTT-TTTCCACCAATTTTAG-TA-AAGTCAAAGTTCATG-C-CTTAAATGA-GAC
* * * *
1599191 AAACATGTATACTCA-TACT-A-ATCCAGTT-ATTTTCAG
124 AAACATGGATTCT-AGTAATGATCTCCA-TTCATTTT--G
* * * * * *
1599227 G-ATTAGGCACCATAAACATC-GTCTTCTCATTAGGACACATCATATTGATGC-TTGGGCTTGCA
1 GAATTAGGCACCATAAACA-CATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * * *
1599289 AGAAAGGCA-TTTTTCCCGCCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACTT
65 AGAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACAT
* *
1599353 GGATTCTAGTAACGATCTTCATTCATTTTG
130 GGATTCTAGTAATGATCTCCATTCATTTTG
* * * * * *
1599383 GGATTAGACACTATAAACACATTCTCCTCATTGGGATAAATGATATTGATGC------AT-GC--
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAA
* * * * * *** * * * * * *
1599439 -AAA-TCCTTTCTTTGCC-CTACTTTCCTTTACGTCAAAGTTCATGCCATAAATAAGCCAAGCAT
66 GAAAGGCATTT-TTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACAT
* * * * * *
1599501 CGATTCTTGCAACAGA-CTCCAATC--TTTC
130 GGATTCTAGTAA-TGATCTCCATTCATTTTG
* * * * * * ** *
1599529 AAGACTAGGAAGCCAAAAACACATTC-CCTTCATTAGGATACATCACATTCCTGCTTTGGTGTCG
1 GA-ATTAGGCA-CCATAAACACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGTCTCG
* * * * * *
1599593 CAAGAAAAGC-TTTTTTTCCATCGATTTGA-TAGAGTC-AAGTT--TGTCTCTTAAA-AACGAC-
63 CAAGAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATG-C-CTTAAATGA-GACA
** * * * * *
1599651 AACATTAATACTCA-TACTAATCCCCGTTC-TTTTCAG
125 AACATGGATTCT-AGTAATGATCTCCATTCATTTT--G
* * * * *
1599687 G-ATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGACTCCCAA
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAA
* * *
1599751 GAAAGGCATTTTTTTCCATCAA-TTTAGTAAAGTC-TAGTTCATGCCTCAAATGAGACAAACATG
66 GAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACATG
* *
1599814 GATTATAGTAATGATCTTCATTCATTTTG
131 GATTCTAGTAATGATCTCCATTCATTTTG
** * * * ** * **
1599843 GAATTAGGCACTGTAAACACATTCTCCTCATTAGGATAAATGATATTGGAGGATTTTTTTTTACT
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATT-GATGCTTTGGTCTCGC-
** * * ** ** * * *
1599908 TGGAAA-TCATTTCTTTGCCA--TGTTTTCCTTTAAA-TCAAAGTTCATACCTTAAATAAGGCAA
64 AAGAAAGGCATTT-TTTTCCACCAATTTT--AGTAAAGTCAAAGTTCATGCCTTAAATGAGACAA
* * * *
1599969 GCATCGATTCTTGTAAT-AGTCTCCATTC-TTTTT
126 ACATGGATTCTAGTAATGA-TCTCCATTCATTTTG
* * * * * * * *
1600002 AAGACTAGGAAGCCA-AAAGCACAATC-CCTTCATTAGGATACTTGACATTGACGCTTTGGTGTC
1 GA-ATTAGGCA-CCATAAA-CACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGTCTC
* * *
1600065 GCGAGAAATGC-TTTCTGTT-------TTTTA-TAGAA-TCAAAGTT--TGTCTCTTAAAT-ATG
62 GCAAGAAAGGCATTT-TTTTCCACCAATTTTAGTA-AAGTCAAAGTTCATG-C-CTTAAATGA-G
* * * * * * * *
1600117 AAAAACAAGAATACTCA-CACTGATGC-CCA-TCCTTTTC
122 ACAAACATGGATTCT-AGTAATGAT-CTCCATTCATTTTG
* * * * * * *
1600154 AAGATTAGGCACCATAAACATAGTCTTCTTATTAGGATACACGATATTGATGCTTTGGTTTCGCA
1 GA-ATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * * * * * *
1600219 GGAAAGGTA-TTTTTCCCACCAATTTTTGTAAAGTCTATGTTCGTGCCTCAAATGAAACAAACAT
65 AGAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACAT
* * * *
1600283 GGATTCTAATAACGATCTTCATCCATTTTG
130 GGATTCTAGTAATGATCTCCATTCATTTTG
* ** * * ** * *
1600313 TG-ATTAAGCACTGTAAACACATTCTCCTCATTAGGATAGATGATATTGATGATTTTCTTTTTGC
1 -GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATG-CTTTGGTCTCGC
* * * * * ** * *
1600377 ATGGGAA-TC-TTTTGTTTACC-CTATTTTTCTTCAAA-TCAAAGTTCATACCTTAAATAAGACA
64 A-AGAAAGGCATTTT-TTT-CCACCAATTTTAGT-AAAGTCAAAGTTCATGCCTTAAATGAGACA
* * * * * *
1600438 AGCATTGATTCTTGTAA-CAGTCTCTATTC-TTTTC
125 AACATGGATTCTAGTAATGA-TCTCCATTCATTTTG
* * * * * * * *
1600472 AAGACTAGGAAACCA-AAAGCACATTC-CCTTCCTTAGG----AGGACATTGAAGCTTTGGTGTC
1 GA-ATTAGG-CACCATAAA-CACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGTCTC
* * * * **
1600531 GCGAGAAATGCTTTTTTTTTCACCGTTTTTTA-TAGAA-TCAAAGTT--TGCCTCTTAAAT-ATG
62 GCAAGAAAGGCATTTTTTTCCACC-AATTTTAGTA-AAGTCAAAGTTCATG-C-CTTAAATGA-G
* * ** * *
1600591 AAAAACATGAATAATACTCACACTGATGC-CCA-TCCTTTTCAG
122 ACAAACATGGATTCTAGT-A-A-TGAT-CTCCATTCATTTT--G
* * * * * ** * *
1600633 G-ATTA-GCACCGTAAACATAGTCTTCTCATTAGAATACACAACATTGATGCTTTGGTTTCGCAA
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAA
* * * * *** * ** *
1600696 GAAAGGTAATTTTTCCCACCAATTTTTGTAAAGTCTTTGTTCGTGCCCCAAATGAAACAAACATG
66 GAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACATG
* * *
1600761 GATTCTAGTAATGATATTCATTCATTTTAT
131 GATTCTAGTAATGATCTCCATTCATTTT-G
* * * * * ** * *
1600791 G-ATTAGGCACAAT-AACACATTCTCCTCATTAGGATAAATAATATTCATGATTTTCTTTTGCAT
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA-
* * * * * ** * * * * * * * *
1600854 GGGAA-TC-TTTTCTTTGC-CCTATTTTCCTTCAATTCTAAGTTCATACCTTATATAAGGCAAGC
65 AGAAAGGCATTTT-TTTCCACCAATTTT-AGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAAC
* *
1600916 ATCGATTCTCA-TAAT-AGTCTCCATTC--TTTC
128 ATGGATTCT-AGTAATGA-TCTCCATTCATTTTG
* * * * * * * * *
1600946 AAGACTAGGAAGCA-AAAGCACATTC-CCTTCCTTAGG----AGGACATTGAAGC-TTGGTGTCG
1 GA-ATTAGGCACCATAAA-CACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGTCTCG
* * * * *
1601004 CGAGAAATGC-TTTTCTTTTCACC-GTTTTTGATAGAA-TCAAAGTT--TGCTTCTTAAAT-ATG
63 CAAGAAAGGCATTTT-TTTCCACCAATTTTAG-TA-AAGTCAAAGTTCATGC--CTTAAATGA-G
* * ** * * * *
1601063 AAAAACATGAATAATACTCACACTGAT-GCCA-TCCTTTTCA
122 ACAAACATGGATTCTAGT-A-A-TGATCTCCATTCATTTT-G
* * * * * *
1601103 GAATTA-GCACCGTAAACATAGTCTTCTCATTAGGATACATGACATTGATGCTTTGGTTTCGCAA
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAA
* * * * *** * * *
1601167 GAAAGGTAATTTTTCCCACCAATTTTTGTAAAGTCTTTGTTCATGACTGAAATGAAACAAACATG
66 GAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACATG
*
1601232 GATTCTAGTAATGATCTTCATTCA-TTTG
131 GATTCTAGTAATGATCTCCATTCATTTTG
* * * * * * ** * * *
1601260 TG-ATTAGGCACAATAAACACATTCTCCTCATTAGGATAAATAATATTCACGATTTTCTTTTGCG
1 -GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * ** * * * **
1601324 TGAGAA-TC-TTTTCTTTGC-CCTATTTTCCTTCAAA-TCAAAGTTCATACCTTATATAAGGTAA
65 AGA-AAGGCATTTT-TTTCCACCAATTTT-AGT-AAAGTCAAAGTTCATGCCTTAAATGAGACAA
* * * *
1601385 GCATCGATTCTCA-TAAT-AGTTTCCATTC--TTTC
126 ACATGGATTCT-AGTAATGA-TCTCCATTCATTTTG
* * * * * * *
1601417 AAGACTAGGAAGCCAAAAACACATTC-CCTTCATTAGGAAACATGACATTGATGCTTT-GTGGTC
1 GA-ATTAGGCA-CCATAAACACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGT-CTC
* * * * *
1601480 ACAAGAAAAGC-TTTTCTTTCCCACC--GTTTGGATAGAA-TCCAAGTT--TGTCTCTTAAAT-A
62 GCAAGAAAGGCATTTT-TTT-CCACCAATTTTAG-TA-AAGTCAAAGTTCATG-C-CTTAAATGA
* * * * *
1601538 TGACAAACATGAATACTCA-TACA-AATCCTCACCTT-TTTTTCAG
121 -GACAAACATGGATTCT-AGTA-ATGAT-CTC-CATTCATTTT--G
** * ** * * ** * * *
1601581 G-ATTAGGCACCATAAACGTAGTCTTTTAATTACGATACGCGATATCG-TGCTTTAGTTTCGC-A
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAA
* * * * ** * * *
1601643 GAAAGTCA-TTTTTCCCACCAAATTTCGTAAAGTTTAAGTTCGTGCCTCAAATGAGACAAACATA
66 GAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACATG
* * * *
1601707 GAATCTAGTAATGATTTTCATTCAATTTG
131 GATTCTAGTAATGATCTCCATTCATTTTG
* * * ** * *
1601736 TG-A-TA-GCACTAT-AACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCA
1 -GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * ** ** *
1601797 TTGGAA-TC-TTTTCTTTGC-CCTGTTTTCCTTCAAA-TCAAAGTTCATACCTT-AAT-ACGACA
65 -AGAAAGGCATTTT-TTTCCACCAATTTT-AGT-AAAGTCAAAGTTCATGCCTTAAATGA-GACA
* * * * *
1601856 AGCATCGATTCTCGTAA-CAGTCTCC-TGTC-TTTTC
125 AACATGGATTCTAGTAATGA-TCTCCAT-TCATTTTG
* * * * ** * * *
1601890 AAGATTGGGAAGCCCA-AAAC-CTTTC-CCTCCATCGGGATAAATGACATTGATGCTTTGGTATC
1 GA-ATTAGGCA--CCATAAACACATTCTCCT-CATTAGGATACATGATATTGATGCTTTGGTCTC
* * * *
1601952 ACAAGAAAAGC-TTTTCCTTT-CACC-ATTTTTGATAGAA-TCAAAGTT--TGTCTTCTAAAT-A
62 GCAAGAAAGGCATTTT--TTTCCACCAATTTTAG-TA-AAGTCAAAGTTCATG-CCT-TAAATGA
* * * * * * *
1602010 CAACAAACAAGTAATGTATACTCATACTAATC-CCTGTTC-TTTT-
121 -GACAAACATG-GAT-TCTAGT-A-A-TGATCTCC-ATTCATTTTG
* * * ** *
1602053 CAGATTAGACACCATAAA-ACATAGCCTTGTCATTAGGATACATCATATTGATGCTTTGGT-TAC
1 GA-ATTAGGCACCATAAACACAT--TCTCCTCATTAGGATACATGATATTGATGCTTTGGTCT-C
* *
1602116 GCAAGAAAGGCA--TTTTCCCACCAATTTTAGTAAAGTCTAAGTTCATGCCTTAAATGAGACAAA
62 GCAAGAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAA
*
1602179 CATGGATTCTAGTAATGATCTTCATTCA--TT-
127 CATGGATTCTAGTAATGATCTCCATTCATTTTG
** * ** * *
1602209 G-ATTAGGCACTGTAAACACATTCTCCTCATTAGGATA-AGTGATATTGATGAATTTTTTTTTTG
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACA-TGATATTGATG--CTTTGGTCTCG
* * * * * * ** * *
1602272 CATGGAAA-TCCTTTCTTTGC-CCTATTTTCCTTTAAA-TCAAAGTTCATAG-CTTAAATAAGGC
63 CA-AGAAAGGCATTTTTTTCCACCAATTTT--AGTAAAGTCAAAGTTCAT-GCCTTAAATGAGAC
* * ** * *
1602333 AAGCATCGATTCTTCTAA-CAGTCTCCATTC-TTTTC
124 AAACATGGATTCTAGTAATGA-TCTCCATTCATTTTG
* * * * * *
1602368 AAGACTAGGAAGCCA-AAAGCACATTC-GCTCATTAGGATACATGACATTGATGCTTTGGTGTCG
1 GA-ATTAGGCA-CCATAAA-CACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCG
* * * * ** *
1602431 CGAGAAATGCTTTTTTTTTGCACCGTTTTTAATAGAA-TCAAAGTT--TGTCTCTTAAAT-ATGA
63 CAAGAAAGGC-ATTTTTTTCCACCAATTTTAGTA-AAGTCAAAGTTCATG-C-CTTAAATGA-GA
* * * *
1602492 -AAACATGAATAC-AGACCCTAATG--C-CCATCCTTTTTAG
123 CAAACATGGATTCTAG----TAATGATCTCCATTCATTTT-G
* * * * * * * * * *
1602529 G-ATTGGGCACCATAAACATAGTCTTCTCGTTAAGATACACGATATTGATGCTATAGTTTCGCAA
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAA
* * * * * * *
1602593 GAAAAG--TTATTTTCCCACCAATTTTTGTAAAGTCTATGTTCGTG-CTTCAAATGAAACAAACA
66 GAAAGGCATT-TTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTT-AAATGAGACAAACA
*
1602655 TGGATTCTAGTAATGATCTTCATTCATTTTG
129 TGGATTCTAGTAATGATCTCCATTCATTTTG
* ** * * * * *
1602686 TG-ATTAGACACTGTAAACACATTCTCCTCGTTAGGATAAATGATATT-CTGATTT--TCTTTGC
1 -GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTC-TCGC
* * * * ** * *
1602747 ACGAGAATG--TTTTCTTTGC-CCTATTTTCCTTCAAA-TCAAAGTTCATACCTTAAATAAGACA
64 AAGA-AAGGCATTTT-TTTCCACCAATTTT-AGT-AAAGTCAAAGTTCATGCCTTAAATGAGACA
* * * **
1602808 AGCATCGATTCTCGTAAACAGTCTCCATTC-TTTT-
125 AACATGGATTCTAGTAATGA-TCTCCATTCATTTTG
* * * * * * *
1602842 CAA-GACTGCAAAGCCA-AAACACATTCTCTTCATTAGGAAACATGACATTGATGCTTTAGG-GT
1 GAATTA-GGC--A-CCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTT-GGTCT
* * * *
1602904 CACAAGAAAAGC-TTTTCTTTTCACCATTTTTCA-TAGAA-TCAAAGTT--TGTCTCTTAAAT-A
61 CGCAAGAAAGGCATTTT-TTTCCACCAATTTT-AGTA-AAGTCAAAGTTCATG-C-CTTAAATGA
* * * * * *
1602963 TGACAAACATGAATACTCGTACTAAT-T-C-TTGACCTTTTCAG
121 -GACAAACATGGATTCTAGTAATGATCTCCATT--CATTTT--G
* ** * * ** * * * *
1603004 G-ATTAGGCAGCAT-AACGTAGTGTTTTAATTAGGATACACGATATTGATGCTTTAGTTTCGC--
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAA
** * * * * *
1603065 --AAGGCA--TTTTTCCTACCAAATTTCGGTGAAGTCTAAGTTCGTGCCTCAAATGAGACAAATA
66 GAAAGGCATTTTTTTCC-ACC-AATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACA
* * *
1603126 TGGATTCCAGAAATGATCTTCA-TCATTTTG
129 TGGATTCTAGTAATGATCTCCATTCATTTTG
** * * * *
1603156 TG-ATTAGGCACTGTAAATACATTCTCCTCATTAAGATAAATGATATTGATGCTTTGGTGTCGCA
1 -GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * *
1603220 AGAAAAG--TTTTCTTTTCACC-GTTTTTGATAGAA-TCAAAGTT--TGTCTCTTAAAT-ATGAT
65 AGAAAGGCATTTT-TTTCCACCAATTTTAG-TA-AAGTCAAAGTTCATG-C-CTTAAATGA-GAC
* * * *
1603278 AAACATGTATACTCA-TACTAATC-CCAGTT-ATTTTCAG
124 AAACATGGATTCT-AGTAATGATCTCCA-TTCATTTT--G
* * * * * *
1603315 G-ATTAGGCACCATAAACATC-GTCTTCTCATTAGGACACATCATATTGATGCTTTGGGCTTGCA
1 GAATTAGGCACCATAAACA-CATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * *
1603378 AGAAAGGCATTTTTTTTCCCGCCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAAC
65 AGAAAGGCA-TTTTTTT-CCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAAC
* * * *
1603443 TTGGATTTTTAGTAACGATCTTCATTCATTTTG
128 ATGGA-TTCTAGTAATGATCTCCATTCATTTTG
* * * * * * * *
1603476 GGATTAGACACTATAAACACATTCTCCTCATTTGGAT--AT-A-AATGAT--ATT-G-AT-GCAT
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAA
* * * * * *** * * * * * *
1603532 GCAA-TCCTTTCTTTTCC-CTACTTTCCTTTACGTCAAAGTTCATGCCATAAATAAGCCAAGCAT
66 GAAAGGCATTT-TTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACAT
* * * * * *
1603595 CGATTCTTGCAACAGA-CTCCAATC-TTTTC
130 GGATTCTAGTAA-TGATCTCCATTCATTTTG
* * * * * * ** * *
1603624 AAGACTAGGAAGCCAAAAACACATTC-CCTTCATTAGGATACATCACATTCCTGCTTTGGTGTTG
1 GA-ATTAGGCA-CCATAAACACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGTCTCG
* * * * * * *
1603688 CAAGAAAAGC-TTTTTTTTCATCGATTTGA-TAGAGTCAAAGTT--TGTCTCTTAAA-AACGACA
63 CAAGAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATG-C-CTTAAATGA-GACA
** * * * * *
1603748 AACATTAATACTCA-TACTAATCCCCGTTC-TTTTCAG
125 AACATGGATTCT-AGTAATGATCTCCATTCATTTT--G
* * * *
1603784 G-ATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGACTCGCAA
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAA
* * *
1603848 GAAAGAGGCATTTTTTTTCCATCAATTTTAGTAAAGTCTAAGTTCATGCCTCAAATGAAGACAAA
66 G-AA-AGGCA-TTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATG-AGACAAA
* *
1603913 CATGGATTCTACTAATGATCTTCATTCATTTTG
127 CATGGATTCTAGTAATGATCTCCATTCATTTTG
** * * * * * ** * ** *
1603946 GAATTAGGCACTGTAAACACATTATCCGCATCAGGATAAATGATATTGATGATTTTTTTTTACTT
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGC-A
* * * * * ** * * * * *
1604011 GGAAA-TCATTTCTTTGC-CCTATTTTCCTTTAAA-TGAAAGTTCATACCTTAAATAAGGCAAGC
65 AGAAAGGCATTTTTTTCCACCAATTTT--AGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAAC
* * *
1604073 ATCGATTCTTGTAAT-AGTCTCCATTC-TTTTC
128 ATGGATTCTAGTAATGA-TCTCCATTCATTTTG
* * * * * * *
1604104 AAGACTAGGAAGCCA-AAAGCACAATC-CCTTCATTAGGATACTTGACATTGATGCTTTGGTGTC
1 GA-ATTAGGCA-CCATAAA-CACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGTCTC
* * * **
1604167 GCGAGAAATGC-TTTTCTTTCGACCGTTTTTTA-TAGAA-TCAAAGTT--TGTCTCTTAAAT-AT
62 GCAAGAAAGGCATTTT-TTTCCACC-AATTTTAGTA-AAGTCAAAGTTCATG-C-CTTAAATGA-
* * * * * * * *
1604226 GAAAAACAAGAATACTCA-CACTGATGGC-CCA-TCCTTTTC
121 GACAAACATGGATTCT-AGTAATGAT--CTCCATTCATTTTG
* * * * * * *
1604265 AAGATTAGGCACCATAAACATAGTCTTCTTATTAGGATACACGATATTGATGCTTTGGTTTCGCA
1 GA-ATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * * * ** *
1604330 AGAAAGGTATTTTTTCCCACCAATTTTTGTAAAGTCTATGTTCGTGCCGCAAATGAAACAAACAT
65 AGAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACAT
* *
1604395 -GAATCTAGTAATGATCTTCATTCATTTTG
130 GGATTCTAGTAATGATCTCCATTCATTTTG
* ** * * * * ** * *
1604424 TG-ATTAGACACTGTAAACACATTCTCCTCGTTAGGATAAATTGATATTTATGATTTTCTTTTGC
1 -GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACA-TGATATTGATGCTTTGGTCTCGC
* * * * ** * *
1604488 ACGAGAA-TC-TTTTCTTTGC-CCTATTTTCCTTCAAA-TCAAAGTTCATACCTTAAATAAGACA
64 AAGA-AAGGCATTTT-TTTCCACCAATTTT-AGT-AAAGTCAAAGTTCATGCCTTAAATGAGACA
* * * * *
1604549 AGCATCGATTCTCGTAA-CAGTCTCCATTC-TTTTC
125 AACATGGATTCTAGTAATGA-TCTCCATTCATTTTG
* * * * * * * *
1604583 AAGACT-GCGAAGCCAAAAACACATTC-CTTCATTAGGAAACATGACATTGATGCTTTAGG-GTC
1 GA-ATTAG-GCA-CCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTT-GGTCTC
* * *
1604645 ACAAGAAAAGC-TTTCTTTT-CACCATTTTTCA-TAGAA-TCAAAGTT--TGTCTCTT-AAT-AT
62 GCAAGAAAGGCATTT-TTTTCCACCAATTTT-AGTA-AAGTCAAAGTTCATG-C-CTTAAATGA-
* * * * *
1604702 GACAAACAT-GATACTCA-TACTAATCCTCGA--CCTTTTCAG
121 GACAAACATGGATTCT-AGTAATGAT-CTCCATTCATTTT--G
** ** * * * * *
1604741 G-ATTAGGCAGGATAAACGTAGTGT-TTAATTAGGATACATGATATTGATGCTTTAG-CTTCGC-
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTC-TCGCA
* * * * *
1604802 ---AAGGCA-TTTTTCCCACCAAATTTT-GTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATA
65 AGAAAGGCATTTTTTTCCACC-AATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACA
* * * *
1604862 CGGATTCCAGAAATGATCTTCATTCATTTTG
129 TGGATTCTAGTAATGATCTCCATTCATTTTG
** * * * *
1604893 TG-ATTAGGCACTGTAAACACATTCTCCTCATTAAGATAAATGATATTGATGCTTTGGTGTCACA
1 -GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * *
1604957 AGAAAAG-TTTTTCTTTTCACC-GTTTT-GATAGAA-TCAAAGTT--TGTCTCTT-AAT-ATGAT
65 AGAAAGGCATTTT-TTTCCACCAATTTTAG-TA-AAGTCAAAGTTCATG-C-CTTAAATGA-GAC
* * * *
1605014 AAACATGTATACTCA-TACTAATC-CCAGTT-ATTTTCAG
124 AAACATGGATTCT-AGTAATGATCTCCA-TTCATTTT--G
* * * * * *
1605051 G-ATTAGGCACCATAAACATC-GTCTTCTCATTAGGACACATCATATTGATGCTTTGGGCTTGCA
1 GAATTAGGCACCATAAACA-CATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * *
1605114 AGAAAGGCATTTTTTTCCCGCCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACT
65 AGAAAGGCATTTTTTT-CCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACA
* *
1605179 TGGATTCTAGTAACGATCTTCATTCATTTTG
129 TGGATTCTAGTAATGATCTCCATTCATTTTG
* * * * * *
1605210 GGATTAGACACTATAAACACATTCTCCTCATTGGGATAAATGATATTGATGC------AT-GC--
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAA
* * * * * *** * * * * * *
1605266 -AAA-TCCTTTCTTTGCC-CTACTTTCCTTTACGTCAAAGTTCATGCCATAAATAAGCCAAGCAT
66 GAAAGGCATTT-TTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACAT
* * * * * *
1605328 CGATTCTTGCAACAGA-CTCCAATC-TTTTC
130 GGATTCTAGTAA-TGATCTCCATTCATTTTG
* * * * * * ** * *
1605357 AAGACTAGGAAGCCAAAAACACATTC-CCTTCATTAGGATACATCACATTCCTACTTTGGTGTCG
1 GA-ATTAGGCA-CCATAAACACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGTCTCG
* * * * * *
1605421 CAAGAAAAGC-TTTTTTTCCATCGATTTGA-TAGAGTCAAAGTT--TGTCTCTTAAA-AACGACA
63 CAAGAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATG-C-CTTAAATGA-GACA
** * * * *
1605481 AACATTAATACTCA-TACTAATC-CTCGTTC-TTTTCAG
125 AACATGGATTCT-AGTAATGATCTC-CATTCATTTT--G
* * * * *
1605517 G-ATTAGGCCCCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGACTC-CAA
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAA
* * *
1605580 GAAAGGCATTTTTTTCCATCAATTTTAGTAAAGTCTAAGTTTCATGCCTCAAATGAGACAAACAT
66 GAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAG-TTCATGCCTTAAATGAGACAAACAT
* *
1605645 GGATTATAGTAATGATCTTCATTCATTTTG
130 GGATTCTAGTAATGATCTCCATTCATTTTG
** * * ** * ** *
1605675 GAATTAGGCACTGTAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTTACTT
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGC-A
* * * ** ** * * * *
1605740 GGAAA-TCATTTCTTTGCCA--TGTTTTCCTTTAAA-TCAAAGTTCATACCTTAAATAAGGCAAG
65 AGAAAGGCATTT-TTTTCCACCAATTTT--AGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAA
* * *
1605801 CATCGATTCTTGTAAT-AGTCTCCATTC-TTTTT
127 CATGGATTCTAGTAATGA-TCTCCATTCATTTTG
* * * * * * * *
1605833 AAGACTAGGAAGCCA-AAAGCACAATC-CCTTCATTAGGATACTTGACATTGACGCTTTGGTGTC
1 GA-ATTAGGCA-CCATAAA-CACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGTCTC
* * *
1605896 GCGAGAAATGC-TTTCTGTT-------TTTTA-TAGAA-TCAAAGTT--TGTCTCTTAAAT-ATG
62 GCAAGAAAGGCATTT-TTTTCCACCAATTTTAGTA-AAGTCAAAGTTCATG-C-CTTAAATGA-G
* * * * * * * *
1605948 AAAAACAAGAATACTCA-CACTGATGC-CCA-TCCTTTTC
122 ACAAACATGGATTCT-AGTAATGAT-CTCCATTCATTTTG
* * * * * * * *
1605985 AAGATTAGGCACCATAAACATAGTCTTCTTATTAGGATACACGATATTGATGCTTTAGTTTCGCA
1 GA-ATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * * * * * *
1606050 GGAAAGGTA-TTTTTCCCACCAATTTTTGTAAAGTCTATGTTCGTGCCTCAAATGAAACAAACAT
65 AGAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACAT
* * * *
1606114 GGATTCTAATAACGATCTTCATCCATTTTG
130 GGATTCTAGTAATGATCTCCATTCATTTTG
* ** * * ** * *
1606144 TG-ATTAAGCACTGTAAACACATTCTCCTCATTAGGATAGATGATATTGATGATTTTCTTTTTGC
1 -GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATG-CTTTGGTCTCGC
* * * * * ** * *
1606208 ATGGGAA-TC-TTTTCTTTACC-CTATTTTTCTTCAAA-TCAAAGTTCATACCTTAAATAAGACA
64 A-AGAAAGGCATTTT-TTT-CCACCAATTTTAGT-AAAGTCAAAGTTCATGCCTTAAATGAGACA
* * * * * *
1606269 AGCATTGATTCTTGTAA-CAGTCTCTATTC-TTTTC
125 AACATGGATTCTAGTAATGA-TCTCCATTCATTTTG
* * * * * * * *
1606303 AAGACTAGGAAACCA-AAAGCACATTC-CCTTCCTTAGG----AGGACATTGAAGCTTTGGTGTC
1 GA-ATTAGG-CACCATAAA-CACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGTCTC
* * * * **
1606362 ACGAGAAATGC-TTTTCTTTTCACCGTTTTTTA-TAGAA-TCAAAGTT--TGCCTCTTAAAT-AT
62 GCAAGAAAGGCATTTT-TTTCCACC-AATTTTAGTA-AAGTCAAAGTTCATG-C-CTTAAATGA-
* ** * *
1606421 GA-AAACATGAATAATACTCACACTGATGC-CCA-TCCTTTTCAG
121 GACAAACATGGATTCTAGT-A-A-TGAT-CTCCATTCATTTT--G
* * * * * ** * *
1606463 G-ATTAGGCACCGTAAACATAGTCTTCTCATTAGAATACACAACATTGATGCTTTGGTTTCGCAA
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAA
* * * * *** * ** *
1606527 GAAAGGTAATTTTTCCCACCAATTTTTGTAAAGTCTTTGTTCGTGCCCCAAATGAAACAAACATG
66 GAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACATG
* *
1606592 GATTCTAGTAATGATATTCATTCATTTTG
131 GATTCTAGTAATGATCTCCATTCATTTTG
* * * * * * ** * * *
1606621 TG-ATTAGGCACAATAAACACATTCTCCTCATTAGGATAAATAATATTCACGATTTTCTTTTGCG
1 -GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * ** * * * **
1606685 TGAGAA-TC-TTTTCTTTGC-CCTATTTTCCTTCAAA-TCAAAGTTCATACCTTATATAAGGTAA
65 AGA-AAGGCATTTT-TTTCCACCAATTTT-AGT-AAAGTCAAAGTTCATGCCTTAAATGAGACAA
* * * *
1606746 GCATCGATTCTCA-TAAT-AGTTTCCATTC-TTTTC
126 ACATGGATTCT-AGTAATGA-TCTCCATTCATTTTG
* * * * * * *
1606779 AAGACTAGGAAGCCAAAAACACATTC-CCTTCATTAGGAAACATGACATTGATGCTTT-GTGGTC
1 GA-ATTAGGCA-CCATAAACACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGT-CTC
* * * * *
1606842 ACAAGAAAAGC-TTTTCTTTCCACC-GTTTTTGATAGAA-TCCAAGTT--TGTCTCTTAAAT-AT
62 GCAAGAAAGGCATTTT-TTTCCACCAATTTTAG-TA-AAGTCAAAGTTCATG-C-CTTAAATGA-
* * * * *
1606901 GACAAACATGAATACTCA-TACA-AATCCTCACCTT--TTTCAG
121 GACAAACATGGATTCT-AGTA-ATGAT-CTC-CATTCATTT-TG
** * ** * * ** * *
1606941 G-ATTAGGCACCATAAACGTAGTCTTTTAATTACGATACGCGATATTCG-TGCTTTAGTTTCGCA
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATT-GATGCTTTGGTCTCGCA
* * * * ** * *
1607004 AGAAAGTCATTTTTTCCCACCAAATTTCGTAAAGTTTAAGTTCGTGCCTCAAATGAGACAAACAT
65 AGAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACAT
* * * * *
1607069 AGAATCTAGTAATGATTTTCATTCAATTTG
130 GGATTCTAGTAATGATCTCCATTCATTTTG
* * * ** * *
1607099 TG-A-TA-GCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCA
1 -GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * ** ** *
1607161 TTGGAA-TC-TTTTCTTTGC-CCTGTTTTCCTTCAAA-TCAAAGTTCATACCTTAAAT-ACGACA
65 -AGAAAGGCATTTT-TTTCCACCAATTTT-AGT-AAAGTCAAAGTTCATGCCTTAAATGA-GACA
* * * * * *
1607221 AGCATCGATTCTCGTAA-CAGTCTCCTTTC-TTTTC
125 AACATGGATTCTAGTAATGA-TCTCCATTCATTTTG
* * * * ** * * *
1607255 AAGATTGGGAAGCCCA-AAAC-CTTTC-CCTCCATCGGGATAAATGACATTGATGCTTTGGTATC
1 GA-ATTAGGCA--CCATAAACACATTCTCCT-CATTAGGATACATGATATTGATGCTTTGGTCTC
* * * * *
1607317 ACAAGAAAAGC-TTTTCTTTTCACC-ATTTTTGATAGAA-TCAAAGTT--TGTCTTCTAAAT-AC
62 GCAAGAAAGGCATTTT-TTTCCACCAATTTTAG-TA-AAGTCAAAGTTCATG-CCT-TAAATGA-
* * * * * * *
1607376 AACAAACAAGTAATGTATACTCATACTAATC-CCTGTTC-TTTTCAG
121 GACAAACATG-GAT-TCTAGT-A-A-TGATCTCC-ATTCATTTT--G
* * ** ** *
1607421 G-ATTAGACACCATAAACATAGCCTTGTCATTAGGATACATCATATTGATGCTTTGGT-TACGCA
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCT-CGCA
* *
1607484 AGAAAGGCA--TTTTCCCACCAATTTTAGTAAAGTCTAAGTTCATGCCTTAAATGAGACAAACAT
65 AGAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACAT
*
1607547 GGATTCTAGTAATGATCTTCATTCA--TT-
130 GGATTCTAGTAATGATCTCCATTCATTTTG
** * ** * *
1607574 G-ATTAGGCACTGTAAACACATTCTCCTCATTAGGATA-AGTGATATTGATGAATTTTTTTTTTG
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACA-TGATATTGATG--CTTTGGTCTCG
* * * * * * ** * *
1607637 CATGGAAA-TCCTTTCTTTGC-CCTATTTTCCTTTAAA-TCAAAGTTCATAG-CTTAAATAAGGC
63 CA-AGAAAGGCATTTTTTTCCACCAATTTT--AGTAAAGTCAAAGTTCAT-GCCTTAAATGAGAC
* * ** * *
1607698 AAGCATCGATTCTTCTAA-CAGTCTCCATTC-TTTTC
124 AAACATGGATTCTAGTAATGA-TCTCCATTCATTTTG
* * * * * * *
1607733 AAGACTAGGAAGCCA-AAAGCACATTCGCTTCATTAGGATACATGACATTGATGCTTTGGTGTCG
1 GA-ATTAGGCA-CCATAAA-CACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCG
* * * * ** *
1607797 CGAGAAATGCTTTTTTTTTGCACCGTTTTTAATAGAA-TCAAAGTT--TGTCTCTTAAAT-ATGA
63 CAAGAAAGGC-ATTTTTTTCCACCAATTTTAGTA-AAGTCAAAGTTCATG-C-CTTAAATGA-GA
* * * * *
1607858 AAAACATGAATAC-AGACCCTAATG--C-CCATCCTTTTTAG
123 CAAACATGGATTCTAG----TAATGATCTCCATTCATTTT-G
* * * * * * * * * *
1607896 G-ATTGGGCACCATAAACATAGTCTTCTCGTTAAGATACACGATATTGATGCTATAGTTTCGCAA
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAA
* * * * * * *
1607960 GAAAAG--TTATTTTCCCACCAATTTTTGTAAAGTCTATGTTCGTG-CTTCAAATGAAACAAACA
66 GAAAGGCATT-TTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTT-AAATGAGACAAACA
*
1608022 TGGATTCTAGTAATGATCTTCATTCATTTTG
129 TGGATTCTAGTAATGATCTCCATTCATTTTG
* ** * * ** * ** * *
1608053 TG-ATTAGACACTGTAAACACATTCTCCTCGTTAGGATAAATGATATTTCTGATTTTCTTTTGCA
1 -GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * ** * *
1608117 CGAGAATG--TTTTCTTTGC-CCTATTTTCCTTCAAA-TCAAAGTTCATACCTTAAATAAGACAA
65 AGA-AAGGCATTTT-TTTCCACCAATTTT-AGT-AAAGTCAAAGTTCATGCCTTAAATGAGACAA
* * * *
1608178 GCATCGATTCTCGTAA-CAGTCTCCATTC-TTTT-
126 ACATGGATTCTAGTAATGA-TCTCCATTCATTTTG
* * * * * * * *
1608210 CAA-GACTGCAAAGCCAAAAACACATTCTCTTCATTAGGAAACATGACATTGATGCTTTAGG-GT
1 GAATTA-GGC--A-CCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTT-GGTCT
* * * *
1608273 CACAAGAAAAGC-TTTTCTTTTCACCATTTTTCA-TAGAA-TCAAAGTT--TGTCTCTTAAAT-A
61 CGCAAGAAAGGCATTTT-TTTCCACCAATTTT-AGTA-AAGTCAAAGTTCATG-C-CTTAAATGA
* * * * * *
1608332 TGACAAACATGAATACTCGTACTAAT-T-C-TTGACCTTTTCAG
121 -GACAAACATGGATTCTAGTAATGATCTCCATT--CATTTT--G
* ** * * ** * * * *
1608373 G-ATTAGGCAGCATAAACGTAGTGTTTTAATTAGGATACACGATATTGATGCTTTAGTTTCGC--
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAA
* * * * * * *
1608435 --AAGGCA--TTTTTCCTACCAAATTTCGTGAAGTCTAAGTTCGTGCCTCAAATGAGACAAATAT
66 GAAAGGCATTTTTTTCC-ACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACAT
* * *
1608496 GGATTCCAGAAATGATCTTCATTCATTTTG
130 GGATTCTAGTAATGATCTCCATTCATTTTG
** * * * *
1608526 TG-ATTAGGCACTGTAAATACATTCTCCTCATTAAGATAAATGATATTGATGCTTTGGTGTCGCA
1 -GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * * *
1608590 AGAAAAG-TTTTTCTTTTCACC-GTTTTTGATAGAA-TCAAAGTT--TGTCTCTTAAAT-ATGAT
65 AGAAAGGCATTTT-TTTCCACCAATTTTAG-TA-AAGTCAAAGTTCATG-C-CTTAAATGA-GAC
* * * *
1608649 AAACATGTATACTCA-TACTAATC-CCAGTT-ATTTTCAG
124 AAACATGGATTCT-AGTAATGATCTCCA-TTCATTTT--G
* * * * * *
1608686 G-ATTAGGCACCATAAACATC-GTCTTCTCATTAGGACACATCATATTGATGCTTTGGGCTTGCA
1 GAATTAGGCACCATAAACA-CATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * * *
1608749 AGAAAGGCA-TTTTTCCCGCCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACTT
65 AGAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACAT
* * *
1608813 GGATTTTTAGTAACGATCTTCATTCATTTTG
130 GGA-TTCTAGTAATGATCTCCATTCATTTTG
* * * * * *
1608844 GGATTAGACACTATAAACACATTCTCCTCATTTGGATAAATGATATTGATGC------AT-GC--
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAA
* * * * *** * * * * * *
1608900 -AAA-TCCTTTCTTTTCC-CTACTTTCCTTTACGTCAAAGTTCATGCCATAAATAAGCCAAGCAT
66 GAAAGGCATTT-TTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACAT
* * * * * *
1608962 CGATTCTTGCAACAGA-CTCCAATC-TTTTC
130 GGATTCTAGTAA-TGATCTCCATTCATTTTG
* * * * * * ** * *
1608991 AAGACTAGGAAGCCAAAAACACATTC-CCTTCATTAGGATACATCACATTCCTGCTTTGGTGTTG
1 GA-ATTAGGCA-CCATAAACACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGTCTCG
* * * * * *
1609055 CAAGAAAAGC-TTTTTTTCCATCGATTTGA-TAGAGTCAAAGTT--TGTCTCTTAAA-AACGACA
63 CAAGAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATG-C-CTTAAATGA-GACA
** * * * * *
1609115 AACATTAATACTCA-TACTAATCCCCGTTC-TTTTCAG
125 AACATGGATTCT-AGTAATGATCTCCATTCATTTT--G
* * * *
1609151 G-ATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGACTCGCAA
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAA
* * *
1609215 GAAAGGCATTTTTTTCCATCAATTTTAGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATG
66 GAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACATG
*
1609280 GATTCTAGTAATGATCTTCATTCATTTTG
131 GATTCTAGTAATGATCTCCATTCATTTTG
** * * * * ** * ** *
1609309 GAATTAGGCACTGTAAACACATTCTCCGCATCAGGATAAATGATATTGATGATTTTTTTTTACTT
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGC-A
* * * * * ** * * * * *
1609374 GGAAA-TCATTTCTTTGC-CCTATTTTCCTTTAAA-TGAAAGTTCATACCTTAAATAAGGCAAGC
65 AGAAAGGCATTTTTTTCCACCAATTTT--AGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAAC
* * *
1609436 ATCGATTCTTGTAAT-AGTCTCCATTC-TTTTC
128 ATGGATTCTAGTAATGA-TCTCCATTCATTTTG
* * * * * * *
1609467 AAGACTAGGAAGCCA-AAAGCACAATC-CCTTCATTAGGATACTTGACATTGATGCTTTGGTGTC
1 GA-ATTAGGCA-CCATAAA-CACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGTCTC
* * * **
1609530 GCGAGAAATGC-TTTTCTTTCGACCGTTTTTTA-TAGAA-TCAAAGTT--TGTCTCTTAAAT-AT
62 GCAAGAAAGGCATTTT-TTTCCACC-AATTTTAGTA-AAGTCAAAGTTCATG-C-CTTAAATGA-
* * * * * * * *
1609589 GAAAAACAAGAATACTCA-CACTGATGC-CCA-TCCTTTTC
121 GACAAACATGGATTCT-AGTAATGAT-CTCCATTCATTTTG
* * * * * * *
1609627 AAGATTAGGCACCATAAACATAGTCTTCTTATTAGGATACACGATATTGATGCTTTGGTTTCGCA
1 GA-ATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * * * * *
1609692 AGAAAGGTA-TTTTTCCCACCAATTTTTGTAAAGTCTATGTTCGTGCCTCAAATGAAACAAACAT
65 AGAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACAT
* *
1609756 GGAATCTAGTAATGATCTTCATTCATTTTG
130 GGATTCTAGTAATGATCTCCATTCATTTTG
* ** * * * * ** * *
1609786 TG-ATTAGACACTGTAAACACATTCTCCTCGTTAGGATAAATGATATTTATGATTTTCTTTTGCA
1 -GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * ** * *
1609850 CGAGAA-TC-TTTTCTTTGC-CCTATTTTCCTTCAAA-TCAAAGTTCATACCTTAAATAAGACAA
65 AGA-AAGGCATTTT-TTTCCACCAATTTT-AGT-AAAGTCAAAGTTCATGCCTTAAATGAGACAA
* * * * *
1609911 GCATCGATTCTCGTAA-CAGTCTCCATTC-TTTTC
126 ACATGGATTCTAGTAATGA-TCTCCATTCATTTTG
* * * * * * *
1609944 AAGACT-GCGAAGCCAAAAACACATTC-CCTTCATTAGGAAACATGACATTGATGCTTTAGG-GT
1 GA-ATTAG-GCA-CCATAAACACATTCTCC-TCATTAGGATACATGATATTGATGCTTT-GGTCT
* * * *
1610006 CACAAGAAAAGC-TTTTCTTTTCACCATTTTTCA-TAGAA-TCAAAGTT--TGTCTCTTAAAT-A
61 CGCAAGAAAGGCATTTT-TTTCCACCAATTTT-AGTA-AAGTCAAAGTTCATG-C-CTTAAATGA
* * * * * *
1610065 TGACAAACATGAATACTCA-TACTAATCCTCGA--CCTTTTCAG
121 -GACAAACATGGATTCT-AGTAATGAT-CTCCATTCATTTT--G
** ** * * ** * *
1610106 G-ATTAGGCAGGATAAACGTAGTGTTTTAATTAGGATACATGATATTGATGCTTTAG-CTTCGC-
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTC-TCGCA
* * * * *
1610168 ---AAGGCA-TTTTTCCCACCAAATTTT-GTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATA
65 AGAAAGGCATTTTTTTCCACC-AATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACA
* * * *
1610228 CGGATTCCAGAAATGATCTTCATTCATTTTG
129 TGGATTCTAGTAATGATCTCCATTCATTTTG
** * * * *
1610259 TG-ATTAGGCACTGTAAACACATTCTCCTCATTAAGATAAATGATATTGATGCTTTGGTGTCACA
1 -GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * * *
1610323 AGAAAAG-TTTTTCTTTTCACC-GTTTTTGATAGAA-TCAAAGTT--TGTCTCTTAAAT-ATGAT
65 AGAAAGGCATTTT-TTTCCACCAATTTTAG-TA-AAGTCAAAGTTCATG-C-CTTAAATGA-GAC
* * * *
1610382 AAACATGTATACTCA-TACTAATC-CCAGTT-ATTTTCAG
124 AAACATGGATTCT-AGTAATGATCTCCA-TTCATTTT--G
* * * * * *
1610419 G-ATTAGGCACCATAAACATC-GTCTTCTCATTAGGACACATCATATTGATGCTTTGGGCTTGCA
1 GAATTAGGCACCATAAACA-CATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * * *
1610482 AGAAAGGCA-TTTTTCCCGCCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACTT
65 AGAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACAT
* *
1610546 GGATTCTAGTAACGATCTTCATTCATTTTG
130 GGATTCTAGTAATGATCTCCATTCATTTTG
* * * * * *
1610576 GGATTAGACACTATAAACACATTCTCCTCATTGGGATAAATGATATTGATGC------AT-GC--
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAA
* * * * * *** * * * * * *
1610632 -AAA-TCCTTTCTTTGCC-CTACTTTCCTTTACGTCAAAGTTCATGCCATAAATAAGCCAAGCAT
66 GAAAGGCATTT-TTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACAT
* * * * * *
1610694 CGATTCTTGCAACAGA-CTCCAATC-TTTTC
130 GGATTCTAGTAA-TGATCTCCATTCATTTTG
* * * * * * ** *
1610723 AAGACTAGGAAGCCAAAAACACATTC-CCTTCATTAGGATACATCACATTCCTGCTTTGGTGTCG
1 GA-ATTAGGCA-CCATAAACACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGTCTCG
* * * * * * *
1610787 CAAGAAAAGCTTTTTTTTCCATCGATTTGA-TAGAGTCAAAGTT--TGTCTCTTAAA-AACGACA
63 CAAGAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATG-C-CTTAAATGA-GACA
** * * * * *
1610848 AACATTAATACTCA-TACTAATCCCCGTTC-TTTTCAG
125 AACATGGATTCT-AGTAATGATCTCCATTCATTTT--G
* * * * *
1610884 G-ATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGACTCCCAA
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAA
* * *
1610948 GAAAGGCATTTTTTTCCATCAATTTTAGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATG
66 GAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACATG
* *
1611013 GATTATAGTAATGATCTTCATTCATTTTG
131 GATTCTAGTAATGATCTCCATTCATTTTG
** * * ** * ** *
1611042 GAATTAGGCACTGTAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTTACTT
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGC-A
* * * ** ** * * * *
1611107 GGAAA-TCATTTCTTTGCCA--TGTTTTCCTTTAAA-TCAAAGTTCATACCTTAAATAAGGCAAG
65 AGAAAGGCATTT-TTTTCCACCAATTTT--AGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAA
* * *
1611168 CATCGATTCTTGTAAT-AGTCTCCATTC-TTTTT
127 CATGGATTCTAGTAATGA-TCTCCATTCATTTTG
* * * * * * * *
1611200 AAGACTAGGAAGCCA-AAAGCACAATC-CCTTCATTAGGATACTTGACATTGACGCTTTGGTGTC
1 GA-ATTAGGCA-CCATAAA-CACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGTCTC
* * *
1611263 GCGAGAAATGC-TTTCTGTT-------TTTTA-TAGAA-TCAAAGTT--TGTCTCTTAAAT-ATG
62 GCAAGAAAGGCATTT-TTTTCCACCAATTTTAGTA-AAGTCAAAGTTCATG-C-CTTAAATGA-G
* * * * * * * *
1611315 AAAAACAAGAATACTCA-CACTGATGC-CCA-TCCTTTTC
122 ACAAACATGGATTCT-AGTAATGAT-CTCCATTCATTTTG
* * * * * * * *
1611352 AAGATTAGGCACCATAAACATAGTCTTCTTATTAGGATACACGATATTGATGCTTTAGTTTCGCA
1 GA-ATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * * * * * *
1611417 GGAAAGGTA-TTTTTCCCACCAATTTTTGTAAAGTCTATGTTCGTGCCTCAAATGAAACAAACAT
65 AGAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACAT
* * * *
1611481 GGATTCTAATAACGATCTTCATCCATTTTG
130 GGATTCTAGTAATGATCTCCATTCATTTTG
* ** * * ** * *
1611511 TG-ATTAAGCACTGTAAACACATTCTCCTCATTAGGATAGATGATATTGATGATTTTCTTTTTGC
1 -GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATG-CTTTGGTCTCGC
* * * * * ** * *
1611575 ATGGGAA-TC-TTTTCTTTACC-CTATTTTTCTTCAAA-TCAAAGTTCATACCTTAAATAAGACA
64 A-AGAAAGGCATTTT-TTT-CCACCAATTTTAGT-AAAGTCAAAGTTCATGCCTTAAATGAGACA
* * * * * *
1611636 AGCATTGATTCTTGTAA-CAGTCTCTATTC-TTTTC
125 AACATGGATTCTAGTAATGA-TCTCCATTCATTTTG
* * * * * * * *
1611670 AAGACTAGGAAACCA-AAAGCACATTC-CCTTCCTTAGG----AGGACATTGAAGCTTTGGTGTC
1 GA-ATTAGG-CACCATAAA-CACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGTCTC
* * * * **
1611729 ACGAGAAATGC-TTTTCTTTTCACCGTTTTTTA-TAGAA-TCAAAGTT--TGCCTCTTAAAT-AT
62 GCAAGAAAGGCATTTT-TTTCCACC-AATTTTAGTA-AAGTCAAAGTTCATG-C-CTTAAATGA-
* * ** * *
1611788 GAAAAACATGAATAATACTCACACTGATGC-CCA-TCCTTTTCAG
121 GACAAACATGGATTCTAGT-A-A-TGAT-CTCCATTCATTTT--G
* * * * * ** * *
1611831 G-ATTAGGCACCGTAAACATAGTCTTCTCATTAGAATACACAACATTGATGCTTTGGTTTCGCAA
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAA
* * * * *** * ** *
1611895 GAAAGGTAATTTTTCCCACCAATTTTTGTAAAGTCTTTGTTCGTGCCCCAAATGAAACAAACATG
66 GAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACATG
* *
1611960 GATTCTAGTAATGATATTCATTCATTTTG
131 GATTCTAGTAATGATCTCCATTCATTTTG
* * * * * ** * *
1611989 TG-ATTAGGCACAATAAACACATTCTCCTCATTAGGATAAATAATATTCATGATTTTCTTTTGCA
1 -GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * * ** * * * * * * * *
1612053 TGGGAA-TC-TTTTCTTTGC-CCTATTTTCCTTCAATTCTAAGTTCATACCTTATATAAGGCAAG
65 -AGAAAGGCATTTT-TTTCCACCAATTTT-AGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAA
* *
1612115 CATCGATTCTCA-TAAT-AGTCTCCATTC-TTTTC
127 CATGGATTCT-AGTAATGA-TCTCCATTCATTTTG
* * * * * * * * * *
1612147 AAGACTAGGAAGCAAAAAGCACATTC-CCTTCCTTAGG----AGGACATTGAAGCTTTGGTGTCG
1 GA-ATTAGGCACCATAAA-CACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGTCTCG
* * * * *
1612207 CGAGAAATGC-TTTTCTTTTCACC-GTTTTTGATAGAA-TCAAAGTT--TGCTTCTTAAAT-ATG
63 CAAGAAAGGCATTTT-TTTCCACCAATTTTAG-TA-AAGTCAAAGTTCATGC--CTTAAATGA-G
* * ** * * *
1612266 AAAAACATGAATAATACTCACACTGATGC-CCA-TCCTTTTCA
122 ACAAACATGGATTCTAGT-A-A-TGAT-CTCCATTCATTTT-G
* * * * * *
1612307 GAATTAGGCACCGTAAACATAGTCTTCTCATTAGGATACATGACATTGATGCTTTGGTTTCGCAA
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAA
* * * * *** * *
1612372 GAAAGGTAATTTTTCCCACCAATTTTTGTAAAGTCTTTGTTCATGACC-GAAATGAAACAAACAT
66 GAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATG-CCTTAAATGAGACAAACAT
*
1612436 GGATTCTAGTAATGATCTTCATTCATTTTG
130 GGATTCTAGTAATGATCTCCATTCATTTTG
* * * * * * ** * * *
1612466 TG-ATTAGGCACAATAAACACATTCTCCTCATTAGGATAAATAATATTCACGATTTTCTTTTGCG
1 -GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * ** * * * **
1612530 TGAGAA-TC-TTTTCTTTGC-CCTATTTTCCTTCAAA-TCAAAGTTCATACCTTATATAAGGTAA
65 AGA-AAGGCATTTT-TTTCCACCAATTTT-AGT-AAAGTCAAAGTTCATGCCTTAAATGAGACAA
* * * *
1612591 GCATCGATTCTCA-TAAT-AGTTTCCATTC-TTTTC
126 ACATGGATTCT-AGTAATGA-TCTCCATTCATTTTG
* * * * * * *
1612624 AAGACTAGGAAGCCAAAAACACATTC-CCTTCATTAGGAAACATGACATTGATGCTTT-GTGGTC
1 GA-ATTAGGCA-CCATAAACACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGT-CTC
* * * * *
1612687 ACAAGAAAAGC-TTTTCTTTCCACC-GTTTTTGATAGAA-TCCAAGTT--TGTCTCTTAAAT-AT
62 GCAAGAAAGGCATTTT-TTTCCACCAATTTTAG-TA-AAGTCAAAGTTCATG-C-CTTAAATGA-
* * * * *
1612746 GACAAACATGAATACTCA-TACA-AATCCTCACCTT--TTTCAG
121 GACAAACATGGATTCT-AGTA-ATGAT-CTC-CATTCATTT-TG
** * ** * * ** * *
1612786 G-ATTAGGCACCATAAACGTAGTCTTTTAATTACGATACGCGATATTCG-TGCTTTAGTTTCGCA
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATT-GATGCTTTGGTCTCGCA
* * * * ** * *
1612849 AGAAAGTCA-TTTTTCCCACCAAATTTCGTAAAGTTTAAGTTCGTGCCTCAAATGAGACAAACAT
65 AGAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACAT
* * * * *
1612913 AGAATCTAGTAATGATTTTCATTCAATTTG
130 GGATTCTAGTAATGATCTCCATTCATTTTG
* * * ** * *
1612943 TG-A-TA-GCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCA
1 -GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * ** ** *
1613005 TTGGAA-TC-TTTTCTTTGC-CCTGTTTTCCTTCAAA-TCAAAGTTCATACCTTAAAT-ACGACA
65 -AGAAAGGCATTTT-TTTCCACCAATTTT-AGT-AAAGTCAAAGTTCATGCCTTAAATGA-GACA
* * * * * *
1613065 AGCATCGATTCTCGTAA-CAGTCTCCTTTC-TTTTC
125 AACATGGATTCTAGTAATGA-TCTCCATTCATTTTG
* * * * ** * * *
1613099 AAGATTGGGAAGCCCA-AAAC-CTTTC-CCTCCATCGGGATAAATGACATTGATGCTTTGGTATC
1 GA-ATTAGGCA--CCATAAACACATTCTCCT-CATTAGGATACATGATATTGATGCTTTGGTCTC
* * * * *
1613161 ACAAGAAAAGC-TTTTCTTTTCACC-ATTTTTGATAGAA-TCAAAGTT--TGTCTTCTAAAT-AC
62 GCAAGAAAGGCATTTT-TTTCCACCAATTTTAG-TA-AAGTCAAAGTTCATG-CCT-TAAATGA-
* * * * * * *
1613220 AACAAACAAGTAATGTATACTCATACTAATC-CCTGTTC-TTTTCAG
121 GACAAACATG-GAT-TCTAGT-A-A-TGATCTCC-ATTCATTTT--G
* * ** ** *
1613265 G-ATTAGACACCATAAACATAGCCTTGTCATTAGGATACATCATATTGATGCTTTGGT-TACGCA
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCT-CGCA
* *
1613328 AGAAAGGCA--TTTTCCCACCAATTTTAGTAAAGTCTAAGTTCATGCCTTAAATGAGACAAACAT
65 AGAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACAT
*
1613391 GGATTCTAGTAATGATCTTCATTCA--TT-
130 GGATTCTAGTAATGATCTCCATTCATTTTG
** * ** * *
1613418 G-ATTAGGCACTGTAAACACATTCTCCTCATTAGGATA-AGTGATATTGATGAATTTTTTTTTTG
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACA-TGATATTGATG--CTTTGGTCTCG
* * * * * * ** * *
1613481 CATGGAAA-TCCTTTCTTTGC-CCTATTTTCCTTTAAA-TCAAAGTTCATAG-CTTAAATAAGGC
63 CA-AGAAAGGCATTTTTTTCCACCAATTTT--AGTAAAGTCAAAGTTCAT-GCCTTAAATGAGAC
* * ** * *
1613542 AAGCATCGATTCTTCTAA-CAGTCTCCATTC-TTTTC
124 AAACATGGATTCTAGTAATGA-TCTCCATTCATTTTG
* * * * * * *
1613577 AAGACTAGGAAGCCA-AAAGCACATTCGCTTCATTAGGATACATGACATTGATGCTTTGGTGTCG
1 GA-ATTAGGCA-CCATAAA-CACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCG
* * * * ** *
1613641 CGAGAAATGCTTTTTTTTTGCACCGTTTTTAATAGAA-TCAAAGTT--TGTCTCTTAAAT-ATGA
63 CAAGAAAGGC-ATTTTTTTCCACCAATTTTAGTA-AAGTCAAAGTTCATG-C-CTTAAATGA-GA
* * * * *
1613702 AAAACATGAATAC-AGACCCTAATG--C-CCATCCTTTTTAG
123 CAAACATGGATTCTAG----TAATGATCTCCATTCATTTT-G
* * * * * * * * * *
1613740 G-ATTGGGCACCATAAACATAGTCTTCTCGTTAAGATACACGATATTGATGCTATAGTTTCGCAA
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAA
* * * * * * *
1613804 GAAATG--TTATTTTCCCACCAATTTTTGTAAAGTCTATGTTCGTG-CTTCAAATGAAACAAACA
66 GAAAGGCATT-TTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTT-AAATGAGACAAACA
*
1613866 TGGATTCTAGTAATGATCTTCATTCATTTTG
129 TGGATTCTAGTAATGATCTCCATTCATTTTG
* ** * * ** * ** * *
1613897 TG-ATTAGACACTGTAAACACATTCTCCTCGTTAGGATAAATGATATTTCTGATTTTCTTTTGCA
1 -GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * ** * *
1613961 CGAGAATG--TTTTCTTTGC-CCTATTTTCCTTCAAA-TCAAAGTTCATACCTTAAATAAGACAA
65 AGA-AAGGCATTTT-TTTCCACCAATTTT-AGT-AAAGTCAAAGTTCATGCCTTAAATGAGACAA
* * * *
1614022 GCATCGATTCTCGTAA-CAGTCTCCATTC-TTTT-
126 ACATGGATTCTAGTAATGA-TCTCCATTCATTTTG
* * * * * * * *
1614054 CAA-GACTGCAAAGCCAAAAACACATTCTCTTCATTAGGAAACATGACATTGATGCTTTAGG-GT
1 GAATTA-GGC--A-CCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTT-GGTCT
* * * *
1614117 CACAAGAAAAGC-TTTTCTTTTCACCATTTTTCA-TAGAA-TCAAAGTT--TGTCTCTTAAAT-A
61 CGCAAGAAAGGCATTTT-TTTCCACCAATTTT-AGTA-AAGTCAAAGTTCATG-C-CTTAAATGA
* * * * * *
1614176 TGACAAACATGAATACTCGTACTAAT-T-C-TTGACCTTTTCAG
121 -GACAAACATGGATTCTAGTAATGATCTCCATT--CATTTT--G
* ** * * ** * * * *
1614217 G-ATTAGGCAGCATAAACGTAGTGTTTTAATTAGGATACACGATATTGATGCTTTAGTTTCGC--
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAA
* * * * * * *
1614279 --AAGGCA--TTTTTCCTACCAAATTTCGTGAAGTCTAAGTTCGTGCCTCAAATGAGACAAATAT
66 GAAAGGCATTTTTTTCC-ACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACAT
* * *
1614340 GGATTCCAGAAATGATCTTCATTCATTTTG
130 GGATTCTAGTAATGATCTCCATTCATTTTG
** * * * *
1614370 TG-ATTAGGCACTGTAAATACATTCTCCTCATTAAGATAAATGATATTGATGCTTTGGTGTCGCA
1 -GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * * *
1614434 AGAAAAG-TTTTTCTTTTCACC-GTTTTTGATAGAA-TCAAAGTT--TGTCTCTTAAAT-ATGAT
65 AGAAAGGCATTTT-TTTCCACCAATTTTAG-TA-AAGTCAAAGTTCATG-C-CTTAAATGA-GAC
* * * *
1614493 AAACATGTATACTCA-TACTAATC-CCAGTT-ATTTTCAG
124 AAACATGGATTCT-AGTAATGATCTCCA-TTCATTTT--G
* * * * * *
1614530 G-ATTAGGCACCATAAACATC-GTCTTCTCATTAGGACACATCATATTGATGCTTTGGGCTTGCA
1 GAATTAGGCACCATAAACA-CATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * * *
1614593 AGAAAGGCA-TTTTTCCCGCCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACTT
65 AGAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACAT
* *
1614657 GGATTCTAGTAACGATCTTCATTCATTTTG
130 GGATTCTAGTAATGATCTCCATTCATTTTG
* * * * * *
1614687 GGATTAGACACTATAAACACATTCTCCTCATTGGGATAAATGATATTGATGC------AT-GC--
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAA
* * * * *** * * * * * *
1614743 -AAA-TCCTTTCTTTTCC-CTACTTTCCTTTACGTCAAAGTTCATGCCATAAATAAGCCAAGCAT
66 GAAAGGCATTT-TTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACAT
* * * * * *
1614805 CGATTCTTGCAACAGA-CTCCAATC-TTTTC
130 GGATTCTAGTAA-TGATCTCCATTCATTTTG
* * * * * * ** * *
1614834 AAGACTAGGAAGCCAAAAACACATTC-CCTTCATTAGGATACATCACATTCCTGCTTTGGTGTTG
1 GA-ATTAGGCA-CCATAAACACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGTCTCG
* * * * * * *
1614898 CAAGAAAAGCTTTTTTTTCCATCGATTTGA-TAGAGTCAAAGTT--TGTCTCTTAAA-AACGACA
63 CAAGAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATG-C-CTTAAATGA-GACA
** * * * * *
1614959 AACATTAATACTCA-TACTAATCCCCGTTC-TTTTCAG
125 AACATGGATTCT-AGTAATGATCTCCATTCATTTT--G
* * * *
1614995 G-ATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGACTCGCAA
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAA
* * *
1615059 GAAAGGCATTTTTTTCCATCAATTTTAGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATG
66 GAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACATG
* *
1615124 GATTCTACTAATGATCTTCATTCATTTTG
131 GATTCTAGTAATGATCTCCATTCATTTTG
** * * * * ** * ** *
1615153 GAATTAGGCACTGTAAACACATTCTCCGCATCAGGATAAATGATATTGATGATTTTTTTTTACTT
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGC-A
* * * * * ** * * * * *
1615218 GGAAA-TCATTTCTTTGC-CCTATTTTCCTTTAAA-TGAAAGTTCATACCTTAAATAAGGCAAGC
65 AGAAAGGCATTTTTTTCCACCAATTTT--AGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAAC
* * *
1615280 ATCGATTCTTGTAAT-AGTCTCCATTC-TTTTC
128 ATGGATTCTAGTAATGA-TCTCCATTCATTTTG
* * * * * *
1615311 AAGACTAGGAAGCCA-AAAGCACAATC-CCTTCATTAGGATAC-TAGACATTGATGCTTTGGTGT
1 GA-ATTAGGCA-CCATAAA-CACATTCTCC-TCATTAGGATACAT-GATATTGATGCTTTGGTCT
* * * **
1615373 CGCGAGAAATGC-TTTTCTTTCGACCGTTTTTTA-TAGAA-TCAAAGTT--TGTCTCTTAAAT-A
61 CGCAAGAAAGGCATTTT-TTTCCACC-AATTTTAGTA-AAGTCAAAGTTCATG-C-CTTAAATGA
* * * * * * * *
1615432 TGAAAAACAAGAATACTCA-CACTGATGC-CCA-TCCTTTTC
121 -GACAAACATGGATTCT-AGTAATGAT-CTCCATTCATTTTG
* * * * * * *
1615471 AAGATTAGGCACCATAAACATAGTCTTCTTATTAGGATACACGATATTGATGCTTTGGTTTCGCA
1 GA-ATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * * * *
1615536 AGAAAGGTA-TTTTTCCCACC-ATTTT-GTAAAGTCTATGTTCGTGCCTCAAATGAAACAAACAT
65 AGAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACAT
* *
1615598 GGAATCTAGTAATGATCTTCATTCATTTTG
130 GGATTCTAGTAATGATCTCCATTCATTTTG
* ** * * * * ** * *
1615628 TG-ATTAGACACTGTAAACACATTCTCCTCGTTAGGATAAATGATATTTATGATTTTCTTTTGCA
1 -GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * ** * *
1615692 CGAGAA-TC-TTTTCTTTGC-CCTATTTTCCTTCAAA-TCAAAGTTCATACCTTAAATAAGACAA
65 AGA-AAGGCATTTT-TTTCCACCAATTTT-AGT-AAAGTCAAAGTTCATGCCTTAAATGAGACAA
* * * * *
1615753 GCATCGATTCTCGTAA-CAGTCTCCATTC-TTTTC
126 ACATGGATTCTAGTAATGA-TCTCCATTCATTTTG
* * * * * * *
1615786 AAGACT-GCGAAGCCAAAAACACATTC-CCTTCATTAGGAAACATGACATTGATGCTTTAGG-GT
1 GA-ATTAG-GCA-CCATAAACACATTCTCC-TCATTAGGATACATGATATTGATGCTTT-GGTCT
* * * *
1615848 CACAAGAAAAGC-TTTTCTTTTCACCATTTTTCA-TAGAA-TCAAAGTT--TGTCTCTTAAAT-A
61 CGCAAGAAAGGCATTTT-TTTCCACCAATTTT-AGTA-AAGTCAAAGTTCATG-C-CTTAAATGA
* * * * * *
1615907 TGACAAACATGAATACTCA-TACTAATCCTCGA--CCTTTTCAG
121 -GACAAACATGGATTCT-AGTAATGAT-CTCCATTCATTTT--G
** ** * * ** * *
1615948 G-ATTAGGCAGGATAAACGTAGTGTTTTAATTAGGATACATGATATTGATGCTTTAG-CTTCGC-
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTC-TCGCA
* * * * *
1616010 ---AAGGCA-TTTTTCCCACCAAATTTT-GTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATA
65 AGAAAGGCATTTTTTTCCACC-AATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACA
* * * *
1616070 CGGATTCCAGAAATGATCTTCATTCATTTTG
129 TGGATTCTAGTAATGATCTCCATTCATTTTG
** * * * *
1616101 TG-ATTAGGCACTGTAAACACATTCTCCTCATTAAGATAAATGATATTGATGCTTTGGTGTCACA
1 -GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * * *
1616165 AGAAAAG-TTTTTCTTTTCACC-GTTTTTGATAGAA-TCAAAGTT--TGTCTCTTAAAT-ATGAT
65 AGAAAGGCATTTT-TTTCCACCAATTTTAG-TA-AAGTCAAAGTTCATG-C-CTTAAATGA-GAC
* * * *
1616224 AAACATGTATACTCA-TACTAATC-CCAGTT-ATTTTCAG
124 AAACATGGATTCT-AGTAATGATCTCCA-TTCATTTT--G
* * * * * *
1616261 G-ATTAGGCACCATAAACATC-GTCTTCTCATTAGGACACATCATATTGATGCTTTGGGCTTGCA
1 GAATTAGGCACCATAAACA-CATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * * *
1616324 AGAAAGGCA-TTTTTCCCGCCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACTT
65 AGAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACAT
* *
1616388 GGATTCTAGTAACGATCTTCATTCATTTTG
130 GGATTCTAGTAATGATCTCCATTCATTTTG
* * * * * *
1616418 GGATTAGACACTATAAACACATTCTCCTCATTGGGATAAATGATATTGATGC------AT-GC--
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAA
* * * * * *** * * * * * *
1616474 -AAA-TCCTTTCTTTGCC-CTACTTTCCTTTACGTCAAAGTTCATGCCATAAATAAGCCAAGCAT
66 GAAAGGCATTT-TTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACAT
* * * * * *
1616536 CGATTCTTGCAACAGA-CTCCAATC-TTTTC
130 GGATTCTAGTAA-TGATCTCCATTCATTTTG
* * * * * * ** *
1616565 AAGACTAGGAAGCCAAAAACACATTC-CCTTCATTAGGATACATCACATTCCTGCTTTGGTGTCG
1 GA-ATTAGGCA-CCATAAACACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGTCTCG
* * * * * *
1616629 CAAGAAAAGC-TTTTTTTCCATCGATTTGA-TAGAGTCAAAGTT--TGTCTCTTAAA-AACGACA
63 CAAGAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATG-C-CTTAAATGA-GACA
** * * * * *
1616689 AACATTAATACTCA-TACTAATCCCCGTTC-TTTTCAG
125 AACATGGATTCT-AGTAATGATCTCCATTCATTTT--G
* * * * *
1616725 G-ATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGACTCCCAA
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAA
* * *
1616789 GAAAGGCATTTTTTTCCATCAATTTTAGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATG
66 GAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACATG
* * *
1616854 GACTATAGTAATGATCTTCATTCATTTTG
131 GATTCTAGTAATGATCTCCATTCATTTTG
** * * ** * ** *
1616883 GAATTAGGCACTGTAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTTACTT
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGC-A
* * * ** ** * * * *
1616948 GGAAA-TCATTTCTTTGCCA--TGTTTTCCTTTAAA-TCAAAGTTCATACCTTAAATAAGGCAAG
65 AGAAAGGCATTT-TTTTCCACCAATTTT--AGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAA
* * *
1617009 CATCGATTCTTGTAAT-AGTCTCCATTC-TTTTT
127 CATGGATTCTAGTAATGA-TCTCCATTCATTTTG
* * * * * * * *
1617041 AAGACTAGGAAGCCA-AAAGCACAATC-CCTTCATTAGGATACTTGACATTGACGCTTTGGTGTC
1 GA-ATTAGGCA-CCATAAA-CACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGTCTC
* * *
1617104 GCGAGAAATGC-TTTCTGTT-------TTTTA-TAGAA-TCAAAGTT--TGTCTCTTAAAT-ATG
62 GCAAGAAAGGCATTT-TTTTCCACCAATTTTAGTA-AAGTCAAAGTTCATG-C-CTTAAATGA-G
* * * * * * * *
1617156 AAAAACAAGAATACTCA-CACTGATGC-CCA-TCCTTTTC
122 ACAAACATGGATTCT-AGTAATGAT-CTCCATTCATTTTG
* * * * * * * *
1617193 AAGATTAGGCACCATAAACATAGTCTTCTTATTAGGATACACGATATTGATGCTTTGGTTTTGCA
1 GA-ATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * * * * * *
1617258 GGAAAGGTA-TTTTTCCCACCAATTTTTGTAAAGTCTATGTTCGTGCCTCAAATGAAACAAACAT
65 AGAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACAT
* * * *
1617322 GGATTCTAATAACGATCTTCATCCATTTTG
130 GGATTCTAGTAATGATCTCCATTCATTTTG
* ** * * ** * *
1617352 TG-ATTAAGCACTGTAAACACATTCTCCTCATTAGGATAGATGATATTGATGATTTTCTTTTTGC
1 -GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATG-CTTTGGTCTCGC
* * * * * ** * *
1617416 ATGGGAA-TC-TTTTCTTTACC-CTATTTTTCTTCAAA-TCAAAGTTCATACCTTAAATAAGACA
64 A-AGAAAGGCATTTT-TTT-CCACCAATTTTAGT-AAAGTCAAAGTTCATGCCTTAAATGAGACA
* * * * * *
1617477 AGCATTGATTCTTGTAA-CAGTCTCTATTC-TTTTC
125 AACATGGATTCTAGTAATGA-TCTCCATTCATTTTG
* * * * * * * *
1617511 AAGACTAGGAAACCA-AAAGCACATTC-CCTTCCTTAGG----AGGACATTGAAGCTTTGGTGTC
1 GA-ATTAGG-CACCATAAA-CACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGTCTC
* * * **
1617570 GCGAGAAATGC-TTTTCTTTTCACCGTTTTTTA-TAGAA-TCAAAGTT--TGCCTCTTAAAT-AT
62 GCAAGAAAGGCATTTT-TTTCCACC-AATTTTAGTA-AAGTCAAAGTTCATG-C-CTTAAATGA-
* * ** * *
1617629 GAAAAACATGAATAATACTCACACTGATGC-CCA-TCCTTTTCAG
121 GACAAACATGGATTCTAGT-A-A-TGAT-CTCCATTCATTTT--G
* * * * * ** * *
1617672 G-ATTAGGCACCGTAAACATAGTCTTCTCATTAGAATACACAACATTGATGCTTTGGTTTCGCAA
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAA
* * * * *** * ** *
1617736 GAAAGGTAATTTTTCCCACCAATTTTTGTAAAGTCTTTGTTCGTGCCCCAAATGAAACAAACATG
66 GAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACATG
* *
1617801 GATTCTAGTAATGATATTCATTCATTTTG
131 GATTCTAGTAATGATCTCCATTCATTTTG
* * * * * ** * *
1617830 TG-ATTAGGCACAATAAACACATTCTCCTCATTAGGATAAATAATATTCATGATTTTCTTTTGCA
1 -GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * * ** * * * * * * * *
1617894 TGGGAA-TC-TTTTCTTTGC-CCTATTTTCCTTCAATTCTAAGTTCATACCTTATATAAGGCAAG
65 -AGAAAGGCATTTT-TTTCCACCAATTTT-AGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAA
* *
1617956 CATCGATTCTCA-TAAT-AGTCTCCATTC-TTTTC
127 CATGGATTCT-AGTAATGA-TCTCCATTCATTTTG
* * * * * * * ** **
1617988 AAGACTGGGAAGCCAAAAACACATTC-CCTTCATTAGGAAACATGACATTGATGCTTTGGGGTTA
1 GA-ATTAGGCA-CCATAAACACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGTCTCG
* **
1618052 CAAGAAAAGC-TTTTCTTTCCACCGTTTTTTA-TAGAA-TCAAAGTT--TGTCTCTTAAAT-ATG
63 CAAGAAAGGCATTTT-TTTCCACC-AATTTTAGTA-AAGTCAAAGTTCATG-C-CTTAAATGA-G
* * * * * * *
1618111 ATAAACATGAATACTCA-TACTAATC-CTCA-CCCTTTTCAG
122 ACAAACATGGATTCT-AGTAATGATCTC-CATTCATTTT--G
* * * ** * * ** * * *
1618150 G-ATTAGGCAGCATAAACATAGTCTTTTAATTATGATACGCGATATTCATGCTTTAGTTTCGCAA
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAA
* * * ** * * *
1618214 GAAAGGCA-TTTTTCCCACCAAATTTCGTAAAGTTTAAGTTCGTGCCTCAAATGAGACAAACATA
66 GAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACATG
* * * *
1618278 GAATCTAGTAATGATTTTCATTCAATTTG
131 GATTCTAGTAATGATCTCCATTCATTTTG
* ** * * ** * *
1618307 TG-ATTA-ACACTGTAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCA
1 -GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * ** ** * *
1618370 TGGGAA-TC-TTTTCTTTGC-CCTGTTTTCCTTCAAA-TCAAAGTTCATACCTTAAATAAGACAA
65 -AGAAAGGCATTTT-TTTCCACCAATTTT-AGT-AAAGTCAAAGTTCATGCCTTAAATGAGACAA
* * * * *
1618431 GCATTGATTCTCA-TAA-CAGTCTCCTTTC-TTTTC
126 ACATGGATTCT-AGTAATGA-TCTCCATTCATTTTG
* * * * * * * *
1618464 AAGATTGGGAAGCCCA-AAACACTTTC-CCTCCATTGGGATAAATGACATTGATGCTTTGGTATC
1 GA-ATTAGGCA--CCATAAACACATTCTCCT-CATTAGGATACATGATATTGATGCTTTGGTCTC
* * * *
1618527 GCAAGAAAAGC-TTTTCTTTTCACC-ATTTTTGATAGAA-TCAAAGTT--TGTCTTTTAAAT-AC
62 GCAAGAAAGGCATTTT-TTTCCACCAATTTTAG-TA-AAGTCAAAGTTCATG-C-CTTAAATGA-
* *
1618586 AACAAACATGTAATGTATACTCATACTAAT-ATC-CCTATTC-TTTTCAG
121 GACAAACATG----G-AT--TC-TAGTAATGATCTCC-ATTCATTTT--G
* * ** ** *
1618633 G-ATTAGACACCATAAACATAGCCTTGTCATTAGGATACATCATATTGATGCTTTGGT-TACGCA
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCT-CGCA
* *
1618696 AGAAAGGCA--TTTTCCCACCAATTTTAGTAAAGTCTAAGTTCATGCCTTAAATGAGACAAACAT
65 AGAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACAT
* * * *
1618759 AGATTCTAGTAATAATCTTCATTCA--AT-
130 GGATTCTAGTAATGATCTCCATTCATTTTG
** * * * ** * *
1618786 G-ATTAGGCACTGTAAACACATTCTCCTAATTAGGATAAATGATATTGATGATTTTTTTTTTTGC
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATG--CTTTGGTCTCGC
* * * * * ** * *
1618850 ATGGAAA-TCCTTTCTTTGC-CCAATTTTCCTTTAAA-TCAAAGTTCATAG-CTTAAGTAACG-C
64 A-AGAAAGGCATTTTTTTCCACCAATTTT--AGTAAAGTCAAAGTTCAT-GCCTTAAATGA-GAC
* * * ** *
1618910 AAGCATCGATTCTTGTAACAATCTCCATT-ATTTTC
124 AAACATGGATTCTAGTAATGATCTCCATTCATTTTG
* * * * * * * *
1618945 AAGACTAGGAAGCCA-AAAGCACATTCGCTTCATTAGGATATATGACATTGATGCTTTGGTGTCG
1 GA-ATTAGGCA-CCATAAA-CACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCG
* * ** *
1619009 CGAGAAATGC-TTTTTTTCCCACCGTTTTTAATAGAA-TCAAAGTT--TGCCTCTTAAA-GATGA
63 CAAGAAAGGCATTTTTTT-CCACCAATTTTAGTA-AAGTCAAAGTTCATG-C-CTTAAATGA-GA
* * ** * *
1619069 AAAACATGAAGAC-AG-ACCCTGATGC-CCA-TCCTTTTCAG
123 CAAACATGGATTCTAGTA--ATGAT-CTCCATTCATTTT--G
* * * * * * * *
1619107 G-ATTGGGCACCATAAACATAGTCTTCTCATTAAGATACACGATATTGATGCTTTGGTTTTGCAA
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAA
* * * * * * * *
1619171 GAAAAGTA-TTTTTCCCACCAATTTTTGTAAAGTCTATGTTCGTG-CTTCAAATGAAACAAACAT
66 GAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTT-AAATGAGACAAACAT
*
1619234 GGATTCTAGTAATGATCTTCATTCATTTTG
130 GGATTCTAGTAATGATCTCCATTCATTTTG
* ** * ** ** * *
1619264 TG-ATTAGACACTGTAAACACATTCTCCTCATTAGGATAAATGATATTGATAAATTTTTTTTTTG
1 -GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGAT--GCTTTGGTCTCG
** * * * * * * * *
1619328 CTTGGAAA-TCATTTATTTGC-CCTATTTTCATTTAAA-TCAAAGTTCATACCTTAAATAAGGCA
63 C-AAGAAAGGCATTTTTTTCCACCAATTTT-A-GTAAAGTCAAAGTTCATGCCTTAAATGAGACA
* * * * *
1619390 AGCATTGATTCTTGTAAT-AGTCTCAATTC-TTTTC
125 AACATGGATTCTAGTAATGA-TCTCCATTCATTTTG
* * ** * *
1619424 AAGATTTGG-ATGCCA-AAACACATTC-CCTTCATTAGGGCAAATGACATTGATGCTTTTGGGT-
1 GA-ATTAGGCA--CCATAAACACATTCTCC-TCATTAGGATACATGATATTGATGC-TTT-GGTC
* ** * *
1619485 T-GCAAGAAAAG-ATTTTCTTT-CACCCGTTTTTGATAGAA-TCAAA-TT-TTGTCTCTTAAAT-
60 TCGCAAGAAAGGCATTTT-TTTCCACCAATTTTAG-TA-AAGTCAAAGTTCATG-C-CTTAAATG
* * * * * *
1619543 ATGACAAACATGAATACTCA-TACTAATCCCCATTC-TTTTC
120 A-GACAAACATGGATTCT-AGTAATGATCTCCATTCATTTTG
* * * * * * * * * * * *
1619583 AAGATTAGACACCATAAACATAGTCTTCTCATTTGAATACATCATAATGATGCTTTGGTTTTGCG
1 GA-ATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * * *
1619648 AGAAAGGC-TTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGATAAACAT
65 AGAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACAT
* * * *
1619712 GGATTCTAGTAAAGACCTTCGA-TCATTTTAT
130 GGATTCTAGTAATGATC-TCCATTCATTTT-G
* * * * * * * * * ** * *
1619743 G-ATTAGGTACTACAAACACAATCTGCTCTTTAGGATAAACGATATTGATGATTTTATTTTGCAT
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA-
* * * * ** * * * *
1619807 GGAAA-TC-TTTTCTTTAC-CCTATTATTCTTAAAATCAAAGTTCAT-CCTTTAAATAAGGCAAG
65 AGAAAGGCATTTT-TTTCCACCAATT-TTAGTAAAGTCAAAGTTCATGCC-TTAAATGAGACAAA
* * *
1619868 CATCGATTCTCA-TAA-CAGTCTCCATTC-TTTTC
127 CATGGATTCT-AGTAATGA-TCTCCATTCATTTTG
* * * * * * * * * * *
1619900 AAGATT-GAGAAGCAAAAACATATTC-CTTTCATTAGGATGCAAGACATTGATGCTCTGGTGTCG
1 GA-ATTAG-GCACCATAAACACATTCTC-CTCATTAGGATACATGATATTGATGCTTTGGTCTCG
* * ** ** *
1619963 TAAGAAAAGC-TTTTCTTTCCACCGTTTTTAACAGAA-TCAAAGTTTAT-CTCTTAAAT-ACGAC
63 CAAGAAAGGCATTTT-TTTCCACCAATTTTAGTA-AAGTCAAAGTTCATGC-CTTAAATGA-GAC
* * * * **
1620024 AAACAAGAATAT-T-GATAATAATC-CCTTTTTTTTTCAG
124 AAACATGGAT-TCTAG-TAATGATCTCCATTCATTTT--G
* ** * * * * ** * * *
1620061 G-ATTAGGTACCATAAACGTAGTCTTCTTATTAAGATACACAACATTGATGC-TTGGTTTTGCAA
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAA
* * * * * * *
1620124 GGAAGGC-TTTCTTCCCCCCAATTTTTA-TAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAT
66 GAAAGGCATTTTTTTCCACCAA-TTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACAT
* **
1620187 GGATTCTAGTAAAGATCTTTATTCA-TTTG
130 GGATTCTAGTAATGATCTCCATTCATTTTG
* * * * ** * * ***
1620216 GTGATTTGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATAATTT-TTTTTTTA
1 G-AATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCA
* * * * ** * *
1620280 TGGAAA-TC-TTTTCTTTGC-CCTATTTTCCTTAAAATCAAAGTTCAT-CTTTTAAAT-ATGGA-
65 -AGAAAGGCATTTT-TTTCCACCAATTTT-AGTAAAGTCAAAGTTCATGC-CTTAAATGA--GAC
* * * *
1620339 AAGCATTGATTCTCA-TAAT-AGTCTCCA-TCCTTTTT
124 AAACATGGATTCT-AGTAATGA-TCTCCATTCATTTTG
* * * * * * * *
1620374 AAGATTGGGAAGCGA-AAACACACTTGCT--TCATTA-AAGTACAAGACATTGATGCTTTGGTGT
1 GA-ATTAGGCA-CCATAAACACA-TT-CTCCTCATTAGGA-TACATGATATTGATGCTTTGGTCT
* * * * *
1620435 TGTAAGAAAAGC-TTTTCTTTCCACC-ATTTTTGATAGAA-TCAAAGTT--TGTCTCTTGAAT-A
61 CGCAAGAAAGGCATTTT-TTTCCACCAATTTTAG-TA-AAGTCAAAGTTCATG-C-CTTAAATGA
* * * * *
1620494 CGACAAACATGAATACTCA-TACTAATC-CCTATTCTTTTTAG
121 -GACAAACATGGATTCT-AGTAATGATCTCC-ATTCATTTT-G
* * * * *
1620535 G-ATTAGGCAGCATAAACATAGTCTCCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAA
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAA
* * * * * * * *
1620599 GAAAGGCATTTTTTTCAATCCAATTTTTGTAAAGTCTAAGTTCATTCCTTTAATGAGATACATAT
66 GAAAGGCATTTTTTTCCA-CCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACAT
* *** *
1620664 GGATTCTAGTAAAGATCTTTTTTCATTTTTT
130 GGATTCTAGTAATGATCTCCATTCA-TTTTG
* * * * * ** * *
1620695 GAA-TAGGTACTATAAACA-ATTCTCCTC-TTCAAGATAAATGATATTGATGATTTTATTTTGCA
1 GAATTAGGCACCATAAACACATTCTCCTCATT-AGGATACATGATATTGATGCTTTGGTCTCGCA
* ** * * ** * * * *
1620757 TGAAAATC-TTTTCTTTGC-CCTATTTTCCTTAAAATCAAAGTTCAT-CCTTTAAATAAGGCAAG
65 AGAAAGGCATTTT-TTTCCACCAATTTT-AGTAAAGTCAAAGTTCATGCC-TTAAATGAGACAAA
* * *
1620819 CCTCGATTCTTGT-A-GCAGTCTCCATTC-TTTT-
127 CATGGATTCTAGTAATG-A-TCTCCATTCATTTTG
* * * *
1620850 CATGATTTGG-ATGCCA-AAACACATTC-CCTTCATTAGGATGCATGATATTGATGCTTTGGTGT
1 GA--ATTAGGCA--CCATAAACACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGTCT
* * * * * * *
1620912 CGTAAGAAAAGC-TTTTCTTTCAACC-GTTTTCGATAAAATCAAAGTT--TGTCTCTTAAATGCG
61 CGCAAGAAAGGCATTTT-TTTCCACCAATTTTAG-TAAAGTCAAAGTTCATG-C-CTTAAATGAG
* * * * *
1620973 ACAAACATGAATACTCA--AACTAATCCCCATTC-TTCTCAG
122 ACAAACATGGATTCT-AGTAA-TGATCTCCATTCATT-T-TG
** * * * * * *
1621012 G-ATTAGGCACCAT-AACGTAGTCTCCTCATTAGGATACATCATATTGACGCTTTGGTTTTGCAG
1 GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAA
* * * * *
1621075 GAAAGGC--TTTTTTCCTACCAATTTTTGTAAAGTCTAAGTTCGTGACTCAAATGAGACAAACAT
66 GAAAGGCATTTTTTTCC-ACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACAT
* * *
1621138 GGATTCTTGTAATGATATTCATTC-TTTTG
130 GGATTCTAGTAATGATCTCCATTCATTTTG
* * * * * *
1621167 GTCATTAGACACTATAAACACATTCTCCTAAATAGGATAAATGATATTGATG
1 G-AATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATG
1621219 ATTTTCTTTT
Statistics
Matches: 27585, Mismatches: 8508, Indels: 6562
0.65 0.20 0.15
Matches are distributed among these distances:
146 3 0.00
147 56 0.00
148 554 0.02
149 510 0.02
150 184 0.01
151 350 0.01
152 365 0.01
153 466 0.02
154 1053 0.04
155 516 0.02
156 1161 0.04
157 2390 0.09
158 5056 0.18
159 7560 0.27
160 4226 0.15
161 1294 0.05
162 1073 0.04
163 291 0.01
164 376 0.01
165 31 0.00
166 47 0.00
167 18 0.00
168 5 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (159 bp):
GAATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAA
GAAAGGCATTTTTTTCCACCAATTTTAGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACATG
GATTCTAGTAATGATCTCCATTCATTTTG
Found at i:1595621 original size:947 final size:942
Alignment explanation
Indices: 1593789--1597385 Score: 4428
Period size: 947 Copynumber: 3.8 Consensus size: 942
1593779 TCTTTTCACC
* * *
1593789 GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGATAAACATGTATACTCATACTAATCCCAG
1 GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGAAAAACATGAATACTCACACTAATCCCA-
** * *
1593854 TTATTTTCAGGATTAGGCACCATAAACATCGTCTTCTCATTAGGACACATC-ATATTGATGCTTT
65 TCCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACA-CGATATTGATGCTTT
* * * * * *
1593918 GGGCTT-GCAAGAGAGGCATTTTTCCCGCCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGA
129 -AGTTTCGCAAGAAAGGTATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGA
* * *
1593982 GACAAACTTGGATTCTAGTAACGATCTTCATTCATTTTGGGATTAGACACTATAAACACATTCTC
193 AACAAACATGGATTCTAGTAACGATCTTCATTCATTTTGTGATTAGACACTATAAACACATTCTC
* * * *
1594047 CTCATTGGGATAAATGATATTGATG-----C--ATGCA----AATCCTTTCTTTGCCCTACTTTC
258 CTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGGAATCTTTTCTTTGCCCTATTTTC
* ** * * * * * * *
1594101 CTTTACGTCAAAGTTCATGCCATAAATAAGCCAAGCATCGATTCTTGCAACAGACTCCAATCTTT
323 CTTCAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTT
* * **
1594166 TCAAGACTAGGAAGCCAAAAACACATTCCCTTCATTAGGATACATCACATTCCTA-CTTTGGTGT
388 TCAAGACTAGGAAACCAAAAACACATTCCCTTCATTAGG--A-ATGACATT-GAAGCTTTGGTGT
* * * * * * *
1594230 CGCAAGAAAAGCTTTT-TTTCCATCGA--TTTGATAGAGTCAAAGTTTGTCTCTTAAAAACGACA
449 CACAAGAAAAGCTTTTCTTTTCA-CCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGAAA
* * *
1594292 AACAT-TAATACTCATACTAATCCTCGTTCTTTTCAGGATTAGGCCCCATAAACATAGTCTTCTC
513 AACATGTAATACTCATACTAATCC-CATCCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTC
* ** * * * *
1594356 ATTAGGATACATGATATTGATGCTTTGGACTCCCAAGAAAGGCATTTTTTTCCATCAATTTTAGT
577 ATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGG-AATTTTTCCCACCAATTTTAGT
*
1594421 AAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTATAGTAATGATCTTCATTCATTTTG
641 AAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTG
* *
1594486 -GAATTAGGCACTGTAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTTACT
706 TG-ATTAGGCACTGTAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTTGCA
* *
1594550 TGGAAATCATTTCTTTGCCATGTTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGGCAAGCAT
770 TGGAAATCATTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGGCAAGCAT
* * *
1594615 CGATTCTTGTAATAGTCTCCATTCTTTTTAAGACTAGGAAGCCAAAAGCACAATCCCTTCATTAG
835 CGATTC-TCTAATAGTCTCCATTCTTTTCAAGACTAGGAAGCCAAAAGCACATTCCCTTCATTAG
* *
1594680 GATACTTGACATTGACGCTTTGGTGTCGCGAGAAATGC-TTTCT
899 GATACATGACATTGATGCTTTGGTGTCGCGAGAAATGCTTTTCT
* * *
1594723 GTTTTTTATAGAATCAAAGTTTGTCTCTTAAATATGAAAAACAAGAATACTCACACTGATGCCCA
1 GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGAAAAACATGAATACTCACACTAAT-CCCA
* *
1594788 TCCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTTATTAGGATACACGATATTGATGCTTTA
65 TCCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTA
* *
1594853 GTTTCGCAGGAAAGGTATTTTTCCCACCAATTTTTGTAAAGTCTATGTTCGTGCCTCAAATGAAA
130 GTTTCGCAAGAAAGGTATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAAA
* * *
1594918 CAAACATGGATTCTAATAACGATCTTCATCCATTTTGTGATTA-AGCACTGTAAACACATTCTCC
195 CAAACATGGATTCTAGTAACGATCTTCATTCATTTTGTGATTAGA-CACTATAAACACATTCTCC
* * *
1594982 TCATTAGGATAGATGATATTGATGATTTTCTTTTTGCATGGGAATCTTTTCTTTACCCTATTTTT
259 TCATTAGGATAAATGATATTGATGATTTTC-TTTTGCATGGGAATCTTTTCTTTGCCCTATTTTC
* * *
1595047 CTTCAAATCAAAGTTCATACCTTAAATAAGACAAGCATTGATTCTTGTAACAGTCTCTATTCTTT
323 CTTCAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTT
* * * *
1595112 TCAAGACTAGGAAACCAAAAGCACATTCCCTTCCTTAGG-AGGACATTGAAGCTTTGGTGTCACG
388 TCAAGACTAGGAAACCAAAAACACATTCCCTTCATTAGGAATGACATTGAAGCTTTGGTGTCACA
* * * *
1595176 AGAAATGCTTTTCTTTTCACCGTTTTTTATAGAATCAAAGTTTGCCTCTTAAATATGAAAAACAT
453 AGAAAAGCTTTTCTTTTCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGAAAAACAT
* * *
1595241 GAATAATACTCACACTGATGCCCATCCTTTTCAGGATTAGGCACCGTAAACATAGTCTTCTCATT
518 G--TAATACTCATACTAAT-CCCATCCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATT
* * * *
1595306 AGAATACACAACATTGATGCTTTGGTTTCGCAAGAAAGGTAATTTTTCCCACCAATTTTTGTAAA
580 AGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGG-AATTTTTCCCACCAATTTTAGTAAA
** * * * *
1595371 GTCTTTGTTCGTGCCCCAAATGAAACAAACATGGATTCTAGTAATGATATTCATTCATTTTGTGA
644 GTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGA
** * * * * *
1595436 TTAGGCACAATAAACACATTCTCCTCATTAGGATAAATAATATTCACGATTTTCTTTTGCGT-GA
709 TTAGGCACTGTAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTTGCATGGA
* * * *
1595500 GAATCTTTTCTTTGCCCTATTTTCCTTCAAATCAAAGTTCATACCTTATATAAGGTAAGCATCGA
774 -AATCATTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGGCAAGCATCGA
* * *
1595565 TTCTCATAATAGTTTCCATTCTTTTCAAGACTAGGAAGCCAAAAACACATTCCCTTCATTAGGAA
838 TTCTC-TAATAGTCTCCATTCTTTTCAAGACTAGGAAGCCAAAAGCACATTCCCTTCATTAGGAT
* * *
1595630 ACATGACATTGATGCTTT-GTGGTCACAAGAAAAGCTTTTCTTT
902 ACATGACATTGATGCTTTGGT-GTCGCGAGAAATGCTTTTC--T
* * * *
1595673 CCACCGTTTTTGATAGAATCCAAGTTTGTCTCTTAAATATGACAAACATGAATACTCATACAAAT
1 -----GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGAAAAACATGAATACTCACACTAAT
* * * * *
1595738 CCTCA-CCTTTTCAGGATTAGGCACCATAAACGTAGTCTTTTAATTACGATACGCGATATTCG-T
61 CC-CATCCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATT-GAT
* * *
1595801 GCTTTAGTTTCGCAAGAAA-GTCATTTTTCCCACCAAATTTCGTAAAGTTTAAGTTCGTGCCTCA
124 GCTTTAGTTTCGCAAGAAAGGT-ATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCA
* * * * * *
1595865 AATGAGACAAACATAGAATCTAGTAATGATTTTCATTCAATTTGTGA-TAG-CACTATAAACACA
188 AATGAAACAAACATGGATTCTAGTAACGATCTTCATTCATTTTGTGATTAGACACTATAAACACA
* *
1595928 TTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATTGGAATCTTTTCTTTGCCCTG
253 TTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGGAATCTTTTCTTTGCCCTA
* *
1595993 TTTTCCTTCAAATCAAAGTTCATACCTTAAATACGACAAGCATCGATTCTCGTAACAGTCTCCTT
318 TTTTCCTTCAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCAT
* * * * * * ** *
1596058 TCTTTTCAAGATTGGGAAGCCCAAAAC-CTTTCCCTCCATCGGGATAAATGACATTGATGCTTTG
383 TCTTTTCAAGACTAGGAAACCAAAAACACATTCCCTTCATTAGG---AATGACATTGAAGCTTTG
*
1596122 GTATCACAAGAAAAGCTTTTCTTTTCACCATTTTTGATAGAATCAAAGTTTGTCT-TCTAAATA-
445 GTGTCACAAGAAAAGCTTTTCTTTTCACCATTTTTGATAGAATCAAAGTTTGTCTCT-TAAATAT
* * * * *
1596185 CAACAAACAAGTAATGTATACTCATACTAATCCCTGTTCTTTTCAGGATTAGACACCATAAACAT
509 GAA-AAACATGT-A---ATACTCATACTAATCCC-ATCCTTTTCAGGATTAGGCACCATAAACAT
* * * *
1596250 AGCCTTGTCATTAGGATACATC-ATATTGATGCTTTGGTTACGCAAGAAAGGCA-TTTTCCCACC
568 AGTCTTCTCATTAGGATACA-CGATATTGATGCTTTGGTTTCGCAAGAAAGGAATTTTTCCCACC
*
1596313 AATTTTAGTAAAGTCTAAGTTCATGCCTTAAATGAGACAAACATGGATTCTAGTAATGATCTTCA
632 AATTTTAGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCA
*
1596378 TTCA---T-TGATTAGGCACTGTAAACACATTCTCCTCATTAGGATAAGTGATATTGATGAATTT
697 TTCATTTTGTGATTAGGCACTGTAAACACATTCTCCTCATTAGGATAAATGATATTGATG-A-TT
* *
1596439 TTTTTTTGCATGGAAATCCTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATAGCTTAAATA
760 TTTTTTTGCATGGAAATCATTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATA
*
1596504 AGGCAAGCATCGATTCTTCTAACAGTCTCCATTCTTTTCAAGACTAGGAAGCCAAAAGCACATTC
825 AGGCAAGCATCGATTC-TCTAATAGTCTCCATTCTTTTCAAGACTAGGAAGCCAAAAGCACATTC
* *
1596569 GCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCGAGAAATGCTTTTTTTTTGCACC
889 CCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCGAGAAATGC-----TTTT---CT
* ** *
1596631 GTTTTTAATAGAATCAAAGTTTGTCTCTTAAATATGAAAAACATGAATACAGACCCTAATGCCCA
1 GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGAAAAACATGAATACTCACACTAAT-CCCA
* * * *
1596696 TCCTTTT-AGGATTGGGCACCATAAACATAGTCTTCTCGTTAAGATACACGATATTGATGCTATA
65 TCCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTA
* * *
1596760 GTTTCGCAAGAAAAGT-TATTTTCCCACCAATTTTTGTAAAGTCTATGTTCGTGCTTCAAATGAA
130 GTTTCGCAAGAAAGGTAT-TTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAA
* *
1596824 ACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGACACTGTAAACACATTCTCC
194 ACAAACATGGATTCTAGTAACGATCTTCATTCATTTTGTGATTAGACACTATAAACACATTCTCC
* ** * * *
1596889 TCGTTAGGATAAATGATATTTCTGATTTTCTTTTGCACGAGAATGTTTTCTTTGCCCTATTTTCC
259 TCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGGAATCTTTTCTTTGCCCTATTTTCC
1596954 TTCAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTT
324 TTCAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTT
* * *
1597019 CAAGACT-GCAAAGCCAAAAACACATTCTCTTCATTAGGAAACATGACATTGATGCTTTAGG-GT
389 CAAGACTAGGAAA-CCAAAAACACATTCCCTTCATTAGG--A-ATGACATTGAAGCTTT-GGTGT
* *
1597082 CACAAGAAAAGCTTTTCTTTTCACCATTTTTCATAGAATCAAAGTTTGTCTCTTAAATATGACAA
449 CACAAGAAAAGCTTTTCTTTTCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGAAAA
* * * * * * * *
1597147 ACATG-AATACTCGTACTAAT-TCTTGACCTTTTCAGGATTAGGCAGCATAAACGTAGTGTTTTA
514 ACATGTAATACTCATACTAATCCCAT--CCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTC
* * * * * *
1597210 ATTAGGATACACGATATTGATGCTTTAGTTTCGC----AAGGCATTTTTCCTACCAAATTTCGTG
577 ATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGAATTTTTCCCACCAATTTTAGTA
* * * *
1597271 AAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCCAGAAATGATCTTCATTCATTTTGT
642 AAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGT
* *
1597336 GATTAGGCACTGTAAATACATTCTCCTCATTAAGATAAATGATATTGATG
707 GATTAGGCACTGTAAACACATTCTCCTCATTAGGATAAATGATATTGATG
1597386 CTTTGGTGTC
Statistics
Matches: 2288, Mismatches: 289, Indels: 154
0.84 0.11 0.06
Matches are distributed among these distances:
933 5 0.00
934 242 0.11
935 4 0.00
939 1 0.00
941 1 0.00
942 33 0.01
943 5 0.00
944 35 0.02
946 114 0.05
947 364 0.16
948 77 0.03
949 1 0.00
950 59 0.03
951 182 0.08
952 254 0.11
953 205 0.09
954 311 0.14
955 213 0.09
956 172 0.08
957 9 0.00
960 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.35
Consensus pattern (942 bp):
GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGAAAAACATGAATACTCACACTAATCCCAT
CCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTAG
TTTCGCAAGAAAGGTATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAAAC
AAACATGGATTCTAGTAACGATCTTCATTCATTTTGTGATTAGACACTATAAACACATTCTCCTC
ATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGGAATCTTTTCTTTGCCCTATTTTCCTT
CAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCA
AGACTAGGAAACCAAAAACACATTCCCTTCATTAGGAATGACATTGAAGCTTTGGTGTCACAAGA
AAAGCTTTTCTTTTCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGAAAAACATGTA
ATACTCATACTAATCCCATCCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATA
CACGATATTGATGCTTTGGTTTCGCAAGAAAGGAATTTTTCCCACCAATTTTAGTAAAGTCTAAG
TTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCA
CTGTAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCATT
TCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGGCAAGCATCGATTCTCTAA
TAGTCTCCATTCTTTTCAAGACTAGGAAGCCAAAAGCACATTCCCTTCATTAGGATACATGACAT
TGATGCTTTGGTGTCGCGAGAAATGCTTTTCT
Found at i:1601194 original size:471 final size:477
Alignment explanation
Indices: 1599106--1603206 Score: 4682
Period size: 471 Copynumber: 8.7 Consensus size: 477
1599096 CATTAAGATA
* * *
1599106 AATGATATTGATGCTTTGGTGTCACAAGAAAAGTTTTTCTTTTCACCGTTTTTGATAGAATCAAA
1 AATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTTCACCGTTTTTGATAGAATCAAA
* **
1599171 GTTTGTCTCTTAAATATGATAAACATG--T-ATACTCATACTAAT-CCAGTTATTTTCAGGATTA
66 GTTTGTCTCTTAAATATGAAAAACATGAATAATACTCATACTAATGCCA-TCCTTTTCAGGATTA
* * * *
1599232 GGCACCATAAACATCGTCTTCTCATTAGGACACATC-ATATTGATGCTTGGGCTT-GCAAGAAAG
130 GGCACCATAAACATAGTCTTCTCATTAGGATACA-CGATATTGATGCTTTGGTTTCGCAAGAAAG
* * *
1599295 G-CATTTTTCCCGCCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACTTGGATTC
194 GTCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTC
* * * * *
1599359 TAGTAACGATCTTCATTCATTTTGGGATTAGACACTATAAACACATTCTCCTCATTGGGATAAAT
259 TAGTAATGATCTTCATTCATTTTGTGATTAGGCACTGTAAACACATTCTCCTCATTAGGATAAAT
* * * * **
1599424 GATATTGATG-----C--ATGCA----AATCCTTTCTTTGCCCTACTTTCCTTTACGTCAAAGTT
324 GATATTGATGATTTTCTTTTGCATGGGAATCTTTTCTTTGCCCTATTTTCCTTCAAATCAAAGTT
* * * * * * *
1599478 CATGCCATAAATAAGCCAAGCATCGATTCTTGCAACAGACTCCAATC-TTTCAAGACTAGGAAGC
389 CATACCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGACTAGGAAGC
*
1599542 CAAAAACACATTCCCTTCATTAGG
454 CAAAAGCACATTCCCTTCATTAGG
* ** * * * *
1599566 ATACATCACATTCCTGCTTTGGTGTCGCAAGAAAAGCTTTT-TTTCCATCG-ATTTGATAGAGTC
1 --A-ATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTTCACCGTTTTTGATAGAATC
* * * * * *
1599629 -AAGTTTGTCTCTTAAAAACG-ACAACAT---TAATACTCATACTAATCCCCGTTCTTTTCAGGA
63 AAAGTTTGTCTCTTAAATATGAAAAACATGAATAATACTCATACTAAT-GCCATCCTTTTCAGGA
* ** *
1599689 TTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGACTCCCAAGAA
127 TTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAA
* * * *
1599754 AGG-CATTTTTTTCCATCAA-TTTAGTAAAGTCT-AGTTCATGCCTCAAATGAGACAAACATGGA
192 AGGTCA-TTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
*
1599816 TTATAGTAATGATCTTCATTCATTTTG-GAATTAGGCACTGTAAACACATTCTCCTCATTAGGAT
256 TTCTAGTAATGATCTTCATTCATTTTGTG-ATTAGGCACTGTAAACACATTCTCCTCATTAGGAT
* * * * * * * * *
1599880 AAATGATATTGGAGGATTTTTTTTTACTTGGAAATCATTTCTTTGCCATGTTTTCCTTTAAATCA
320 AAATGATATT-GATGATTTTCTTTTGCATGGGAATCTTTTCTTTGCCCTATTTTCCTTCAAATCA
* * *
1599945 AAGTTCATACCTTAAATAAGGCAAGCATCGATTCTTGTAATAGTCTCCATTCTTTTTAAGACTAG
384 AAGTTCATACCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGACTAG
*
1600010 GAAGCCAAAAGCACAATCCCTTCATTAGG
449 GAAGCCAAAAGCACATTCCCTTCATTAGG
* * * *
1600039 ATACTTGACATTGACGCTTTGGTGTCGCGAGAAATGC-TTTC---T----GTTTTTTATAGAATC
1 A-A--TGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTTCACCGTTTTTGATAGAATC
* * * *
1600096 AAAGTTTGTCTCTTAAATATGAAAAAC---AAGAATACTCACACTGATGCCCATCCTTTTCAAGA
63 AAAGTTTGTCTCTTAAATATGAAAAACATGAATAATACTCATACTAATG-CCATCCTTTTCAGGA
* *
1600158 TTAGGCACCATAAACATAGTCTTCTTATTAGGATACACGATATTGATGCTTTGGTTTCGCAGGAA
127 TTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAA
* *
1600223 AGGT-ATTTTTCCCACCAATTTTTGTAAAGTCTATGTTCGTGCCTCAAATGAAACAAACATGGAT
192 AGGTCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGAT
* * * * *
1600287 TCTAATAACGATCTTCATCCATTTTGTGATTAAGCACTGTAAACACATTCTCCTCATTAGGATAG
257 TCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTGTAAACACATTCTCCTCATTAGGATAA
* * *
1600352 ATGATATTGATGATTTTCTTTTTGCATGGGAATCTTTTGTTTACCCTATTTTTCTTCAAATCAAA
322 ATGATATTGATGATTTTC-TTTTGCATGGGAATCTTTTCTTTGCCCTATTTTCCTTCAAATCAAA
* * * *
1600417 GTTCATACCTTAAATAAGACAAGCATTGATTCTTGTAACAGTCTCTATTCTTTTCAAGACTAGGA
386 GTTCATACCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGACTAGGA
* *
1600482 AACCAAAAGCACATTCCCTTCCTTAGG
451 AGCCAAAAGCACATTCCCTTCATTAGG
* * * * * *
1600509 -AGGACATTGAAGCTTTGGTGTCGCGAGAAATGCTTTTTTTTTCACCGTTTTTTATAGAATCAAA
1 AATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTTCACCGTTTTTGATAGAATCAAA
* * *
1600573 GTTTGCCTCTTAAATATGAAAAACATGAATAATACTCACACTGATGCCCATCCTTTTCAGGATTA
66 GTTTGTCTCTTAAATATGAAAAACATGAATAATACTCATACTAATG-CCATCCTTTTCAGGATTA
* * * *
1600638 -GCACCGTAAACATAGTCTTCTCATTAGAATACACAACATTGATGCTTTGGTTTCGCAAGAAAGG
130 GGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGG
* ** * *
1600702 TAATTTTTCCCACCAATTTTTGTAAAGTCTTTGTTCGTGCCCCAAATGAAACAAACATGGATTCT
195 TCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCT
* * ** *
1600767 AGTAATGATATTCATTCATTTTATGATTAGGCACAAT-AACACATTCTCCTCATTAGGATAAATA
260 AGTAATGATCTTCATTCATTTTGTGATTAGGCACTGTAAACACATTCTCCTCATTAGGATAAATG
* * *
1600831 ATATTCATGATTTTCTTTTGCATGGGAATCTTTTCTTTGCCCTATTTTCCTTCAATTCTAAGTTC
325 ATATTGATGATTTTCTTTTGCATGGGAATCTTTTCTTTGCCCTATTTTCCTTCAAATCAAAGTTC
* * *
1600896 ATACCTTATATAAGGCAAGCATCGATTCTCATAATAGTCTCCATTC-TTTCAAGACTAGGAAG-C
390 ATACCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGACTAGGAAGCC
*
1600959 AAAAGCACATTCCCTTCCTTAGG
455 AAAAGCACATTCCCTTCATTAGG
* * * *
1600982 -AGGACATTGAAGC-TTGGTGTCGCGAGAAATGCTTTTCTTTTCACCGTTTTTGATAGAATCAAA
1 AATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTTCACCGTTTTTGATAGAATCAAA
* * *
1601045 GTTTG-CTTCTTAAATATGAAAAACATGAATAATACTCACACTGATGCCATCCTTTTCAGAATTA
66 GTTTGTC-TCTTAAATATGAAAAACATGAATAATACTCATACTAATGCCATCCTTTTCAGGATTA
* * *
1601109 -GCACCGTAAACATAGTCTTCTCATTAGGATACATGACATTGATGCTTTGGTTTCGCAAGAAAGG
130 GGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGG
* ** * * * *
1601173 TAATTTTTCCCACCAATTTTTGTAAAGTCTTTGTTCATGACTGAAATGAAACAAACATGGATTCT
195 TCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCT
** *
1601238 AGTAATGATCTTCATTCA-TTTGTGATTAGGCACAATAAACACATTCTCCTCATTAGGATAAATA
260 AGTAATGATCTTCATTCATTTTGTGATTAGGCACTGTAAACACATTCTCCTCATTAGGATAAATG
* * * *
1601302 ATATTCACGATTTTCTTTTGCGTGAGAATCTTTTCTTTGCCCTATTTTCCTTCAAATCAAAGTTC
325 ATATTGATGATTTTCTTTTGCATGGGAATCTTTTCTTTGCCCTATTTTCCTTCAAATCAAAGTTC
* * * * *
1601367 ATACCTTATATAAGGTAAGCATCGATTCTCATAATAGTTTCCATTC-TTTCAAGACTAGGAAGCC
390 ATACCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGACTAGGAAGCC
*
1601431 AAAAACACATTCCCTTCATTAGG
455 AAAAGCACATTCCCTTCATTAGG
* * *
1601454 AAACATGACATTGATGCTTT-GTGGTCACAAGAAAAGCTTTTCTTTCCCACCG-TTTGGATAGAA
1 --A-ATGACATTGATGCTTTGGT-GTCGCAAGAAAAGCTTTTCTTT-TCACCGTTTTTGATAGAA
* * * *
1601517 TCCAAGTTTGTCTCTTAAATATGACAAACATG---AATACTCATACAAATCCTCA-CCTTTTTTT
61 TCAAAGTTTGTCTCTTAAATATGAAAAACATGAATAATACTCATACTAATGC-CATCC---TTTT
* * * * * * *
1601578 CAGGATTAGGCACCATAAACGTAGTCTTTTAATTACGATACGCGATATCG-TGCTTTAGTTTCGC
122 CAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGC
* * *
1601642 -AGAAA-GTCATTTTTCCCACCAAATTTCGTAAAGTTTAAGTTCGTGCCTCAAATGAGACAAACA
187 AAGAAAGGTCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACA
* * * * *
1601705 TAGAATCTAGTAATGATTTTCATTCAATTTGTGA-TA-GCACTAT-AACACATTCTCCTCATTAG
252 TGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTGTAAACACATTCTCCTCATTAG
* *
1601767 GATAAATGATATTGATGATTTTCTTTTGCATTGGAATCTTTTCTTTGCCCTGTTTTCCTTCAAAT
317 GATAAATGATATTGATGATTTTCTTTTGCATGGGAATCTTTTCTTTGCCCTATTTTCCTTCAAAT
* * *
1601832 CAAAGTTCATACCTT-AATACGACAAGCATCGATTCTCGTAACAGTCTCC-TGTCTTTTCAAGAT
382 CAAAGTTCATACCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCAT-TCTTTTCAAGAC
* * * **
1601895 TGGGAAGCCCAAAA-C-CTTTCCCTCCATCGGG
446 TAGGAAG-CCAAAAGCACATTCCCTTCATTAGG
* * * *
1601926 ATAAATGACATTGATGCTTTGGTATCACAAGAAAAGCTTTTCCTTTCACCATTTTTGATAGAATC
1 ---AATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTTCACCGTTTTTGATAGAATC
* * * * * *
1601991 AAAGTTTGTCT-TCTAAATA-CAACAAACAAGTAATGTATACTCATACTAATCCCTGTTCTTTTC
63 AAAGTTTGTCTCT-TAAATATGAA-AAACATG-AAT-AATACTCATACTAATGCC-ATCCTTTTC
* * * *
1602054 A-GATTAGACACCATAAAACATAGCCTTGTCATTAGGATACATC-ATATTGATGCTTTGGTTACG
123 AGGATTAGGCACCAT-AAACATAGTCTTCTCATTAGGATACA-CGATATTGATGCTTTGGTTTCG
* * *
1602117 CAAGAAAGG-CA-TTTTCCCACCAATTTTAGTAAAGTCTAAGTTCATGCCTTAAATGAGACAAAC
186 CAAGAAAGGTCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAAC
1602180 ATGGATTCTAGTAATGATCTTCATTCA---T-TGATTAGGCACTGTAAACACATTCTCCTCATTA
251 ATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTGTAAACACATTCTCCTCATTA
* * * * *
1602241 GGATAAGTGATATTGATGAATTTTTTTTTTGCATGGAAATCCTTTCTTTGCCCTATTTTCCTTTA
316 GGATAAATGATATTGATG-A-TTTTCTTTTGCATGGGAATCTTTTCTTTGCCCTATTTTCCTTCA
*
1602306 AATCAAAGTTCATAGCTTAAATAAGGCAAGCATCGATTCTTC-TAACAGTCTCCATTCTTTTCAA
379 AATCAAAGTTCATACCTTAAATAAGGCAAGCATCGATTC-TCGTAACAGTCTCCATTCTTTTCAA
*
1602370 GACTAGGAAGCCAAAAGCACATTCGC-TCATTAGG
443 GACTAGGAAGCCAAAAGCACATTCCCTTCATTAGG
* * * *
1602404 ATACATGACATTGATGCTTTGGTGTCGCGAGAAATGCTTTTTTTTTGCACCGTTTTTAATAGAAT
1 --A-ATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTT-CACCGTTTTTGATAGAAT
* *
1602469 CAAAGTTTGTCTCTTAAATATG-AAAACATGAATACAGAC-C---CTAATGCCCATCCTTTTTAG
62 CAAAGTTTGTCTCTTAAATATGAAAAACATGAATA-ATACTCATACTAATG-CCATCCTTTTCAG
* * * * *
1602529 GATTGGGCACCATAAACATAGTCTTCTCGTTAAGATACACGATATTGATGCTATAGTTTCGCAAG
125 GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAG
* * * * *
1602594 AAAAGTTA-TTTTCCCACCAATTTTTGTAAAGTCTATGTTCGTGCTTCAAATGAAACAAACATGG
190 AAAGGTCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGG
* *
1602658 ATTCTAGTAATGATCTTCATTCATTTTGTGATTAGACACTGTAAACACATTCTCCTCGTTAGGAT
255 ATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTGTAAACACATTCTCCTCATTAGGAT
* * * *
1602723 AAATGATATT-CTGATTTTC-TTTGCACGAGAATGTTTTCTTTGCCCTATTTTCCTTCAAATCAA
320 AAATGATATTGATGATTTTCTTTTGCATGGGAATCTTTTCTTTGCCCTATTTTCCTTCAAATCAA
*
1602786 AGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAAACAGTCTCCATTCTTTTCAAGACT-G
385 AGTTCATACCTTAAATAAGGCAAGCATCGATTCTCGT-AACAGTCTCCATTCTTTTCAAGACTAG
* *
1602850 CAAAGCCAAAA-CACATTCTCTTCATTAGG
449 -GAAGCCAAAAGCACATTCCCTTCATTAGG
* * *
1602879 AAACATGACATTGATGCTTTAGG-GTCACAAGAAAAGCTTTTCTTTTCACCATTTTTCATAGAAT
1 --A-ATGACATTGATGCTTT-GGTGTCGCAAGAAAAGCTTTTCTTTTCACCGTTTTTGATAGAAT
* * * *
1602943 CAAAGTTTGTCTCTTAAATATGACAAACATG---AATACTCGTACTAAT-TCTTGACCTTTTCAG
62 CAAAGTTTGTCTCTTAAATATGAAAAACATGAATAATACTCATACTAATGCCAT--CCTTTTCAG
* * * * * *
1603004 GATTAGGCAGCAT-AACGTAGTGTTTTAATTAGGATACACGATATTGATGCTTTAGTTTCGC---
125 GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAG
* ** * *
1603065 -AAGG-CATTTTTCCTACCAAATTTCGGTGAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATG
190 AAAGGTCATTTTTCCCACC-AATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATG
* * * *
1603128 GATTCCAGAAATGATCTTCA-TCATTTTGTGATTAGGCACTGTAAATACATTCTCCTCATTAAGA
254 GATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTGTAAACACATTCTCCTCATTAGGA
1603192 TAAATGATATTGATG
319 TAAATGATATTGATG
1603207 CTTTGGTGTC
Statistics
Matches: 3149, Mismatches: 368, Indels: 235
0.84 0.10 0.06
Matches are distributed among these distances:
458 1 0.00
459 20 0.01
460 175 0.06
461 39 0.01
462 18 0.01
463 31 0.01
466 31 0.01
467 13 0.00
468 32 0.01
469 113 0.04
470 294 0.09
471 375 0.12
472 306 0.10
473 278 0.09
474 346 0.11
475 340 0.11
476 213 0.07
477 302 0.10
478 178 0.06
479 43 0.01
480 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (477 bp):
AATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTTCACCGTTTTTGATAGAATCAAA
GTTTGTCTCTTAAATATGAAAAACATGAATAATACTCATACTAATGCCATCCTTTTCAGGATTAG
GCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGT
CATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTA
GTAATGATCTTCATTCATTTTGTGATTAGGCACTGTAAACACATTCTCCTCATTAGGATAAATGA
TATTGATGATTTTCTTTTGCATGGGAATCTTTTCTTTGCCCTATTTTCCTTCAAATCAAAGTTCA
TACCTTAAATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGACTAGGAAGCCA
AAAGCACATTCCCTTCATTAGG
Found at i:1603545 original size:311 final size:303
Alignment explanation
Indices: 1602917--1603547 Score: 653
Period size: 311 Copynumber: 2.0 Consensus size: 303
1602907 AAGAAAAGCT
*
1602917 TTTCTTTTCACCATTTTTCATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCG
1 TTTCTTTTCACCATTTTTCATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCA
* ** * * * * * *
1602982 TACTAATTCTTGACCTTTTCAGGATTAGGCAGCATAACGTAGTGTTTTAATTAGGATACACGATA
66 TACTAATCCCAGACATTTTCAGGATTAGGCACCATAACATAGTCTTCTAATTAGGACACACGATA
* * * * *
1603047 TTGATGCTTTAGTTTCGCAAGGCATTTTTCCTACCAAATTTCGGTGAAGTCTAAGTTCGTGCCTC
131 TTGATGCTTTAGTTGCGAAAGGCATTTTTCCCACCAAATTTCGGTAAAGTCTAAGTTCATGCCTC
* * * * *
1603112 AAATGAGACAAATATGGATTCCAGAAATGATCTTCATCATTTTGTGATTAGGCACTGTAAATACA
196 AAATGAGACAAATATGGATTCCAGAAACGATCTTCATCATTTTGGGATTAGACACTATAAACACA
* **
1603177 TTCTCCTCATTAAGATAAATGATATTGATGCTTTGGTGTCGCAAGAAAAGT
261 TTCTCCTCATTAAGATAAATGATATTGATGC-----TATCGC---AAAACC
* * * *
1603228 TTTCTTTTCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGATAAACATGTATACTCA
1 TTTCTTTTCACCATTTTTCATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCA
** * *
1603293 TACTAATCCCAGTTATTTTCAGGATTAGGCACCATAAACATCGTCTTCTCATTAGGACACATC-A
66 TACTAATCCCAGACATTTTCAGGATTAGGCACCAT-AACATAGTCTTCTAATTAGGACACA-CGA
* * **
1603357 TATTGATGCTTTGGGCTTGCAAGAAAGGCATTTTTTTTCCCGCC-AATTTTTGTAAAGTCTAAGT
129 TATTGATGCTTT-AG-TTGC--GAAAGGCA---TTTTTCCCACCAAATTTCGGTAAAGTCTAAGT
** *
1603421 TCATGCCTCAAATGAGACAAACT-TGGATTTTTAGTAACGATCTTCATTCATTTTGGGATTAGAC
187 TCATGCCTCAAATGAGACAAA-TATGGA-TTCCAGAAACGATCTTCA-TCATTTTGGGATTAGAC
* * *
1603485 ACTATAAACACATTCTCCTCATTTGGATATAAATGATATTGATGC-AT-GC-AATCC
249 ACTATAAACACATTCTCCTCA-TT-AAGATAAATGATATTGATGCTATCGCAAAACC
1603539 TTTCTTTTC
1 TTTCTTTTC
1603548 CCTACTTTCC
Statistics
Matches: 265, Mismatches: 41, Indels: 28
0.79 0.12 0.08
Matches are distributed among these distances:
311 99 0.37
312 32 0.12
313 2 0.01
314 3 0.01
315 2 0.01
316 8 0.03
318 41 0.15
319 24 0.09
320 34 0.13
321 2 0.01
322 18 0.07
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (303 bp):
TTTCTTTTCACCATTTTTCATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCA
TACTAATCCCAGACATTTTCAGGATTAGGCACCATAACATAGTCTTCTAATTAGGACACACGATA
TTGATGCTTTAGTTGCGAAAGGCATTTTTCCCACCAAATTTCGGTAAAGTCTAAGTTCATGCCTC
AAATGAGACAAATATGGATTCCAGAAACGATCTTCATCATTTTGGGATTAGACACTATAAACACA
TTCTCCTCATTAAGATAAATGATATTGATGCTATCGCAAAACC
Found at i:1604356 original size:480 final size:473
Alignment explanation
Indices: 1603183--1604943 Score: 2144
Period size: 480 Copynumber: 3.7 Consensus size: 473
1603173 TACATTCTCC
* * *
1603183 TCATTAAGATAAATGATATTGATGCTTTGGTGTCGCAAGAAAAG-TTTTCTTTTCACCGTTTTTG
1 TCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTTCACCGTTTTTG
* * **
1603247 ATAGAATCAAAGTTTGTCTCTTAAATATGATAAACATGTATACTCATACTAATCCCAGTTATTTT
66 ATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCATACTAATCCCA-TCCTTTT
* *
1603312 CAGGATTAGGCACCATAAACATCGTCTTCTCATTAGGACACATC-ATATTGATGCTTTGGGCTT-
130 CAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACA-CGATATTGATGCTTT-GGCTTC
*
1603375 GCAAGAAAGGCATTTTTTTTCCCGCCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACA
193 GCAAGAAAGGCA--TTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACA
* * * * *
1603440 AACTTGGATTTTTAGTAACGATCTTCATTCATTTTGGGATTAGACACTATAAACACATTCTCCTC
256 AACATGGA-TTCTAGTAATGATCTTCATTCATTTTGTGATTAGACACTGTAAACACATTCTCCTC
* * * * *
1603505 ATTTGGATATAAATGATATTGATG---------CATGCAATCCTTTCTTTTCCCTACTTTCCTTT
320 ATTAGG--ATAAATGATATTGATGATTTTTTTTC-TGAAATCATTTCTTTGCCCTATTTTCCTTT
** * * * * * *
1603561 ACGTCAAAGTTCATGCCATAAATAAGCCAAGCATCGATTCTTGCAACAGACTCCAATCTTTTCAA
382 AAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTCAA
*
1603626 GACTAGGAAGCCAAAAACACATTCCCT
447 GACTAGGAAGCCAAAAACACAATCCCT
* ** * * *
1603653 TCATTAGGATACATCACATTCCTGCTTTGGTGTTGCAAGAAAAGCTTTT-TTTTCATCG-ATTTG
1 TCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTTCACCGTTTTTG
* * * * * *
1603716 ATAGAGTCAAAGTTTGTCTCTTAAAAACGACAAACATTAATACTCATACTAATCCCCGTTCTTTT
66 ATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCATACTAAT-CCCATCCTTTT
*
1603781 CAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGAC-TCG
130 CAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGG-CTTCG
* * *
1603845 CAAGAAAGAGGCATTTTTTTTCCATCAATTTTAGTAAAGTCTAAGTTCATGCCTCAAATGAAGAC
194 CAAG-AA-AGGCA-TTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATG-AGAC
* * * *
1603910 AAACATGGATTCTACTAATGATCTTCATTCATTTTG-GAATTAGGCACTGTAAACACATTATCCG
255 AAACATGGATTCTAGTAATGATCTTCATTCATTTTGTG-ATTAGACACTGTAAACACATTCTCCT
*
1603974 CATCAGGATAAATGATATTGATGATTTTTTTTTACTTGGAAATCATTTCTTTGCCCTATTTTCCT
319 CATTAGGATAAATGATATTGATGA-TTTTTTTT-C-T-GAAATCATTTCTTTGCCCTATTTTCCT
* * *
1604039 TTAAATGAAAGTTCATACCTTAAATAAGGCAAGCATCGATTCTTGTAATAGTCTCCATTCTTTTC
380 TTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTC
*
1604104 AAGACTAGGAAGCCAAAAGCACAATCCCT
445 AAGACTAGGAAGCCAAAAACACAATCCCT
* * *
1604133 TCATTAGGATACTTGACATTGATGCTTTGGTGTCGCGAGAAATGCTTTTC-TTTCGACCGTTTTT
1 TCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTTC-ACCGTTTTT
* * * * *
1604197 TATAGAATCAAAGTTTGTCTCTTAAATATGAAAAACAAGAATACTCACACTGATGGCCCATCCTT
65 GATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCATACTAAT--CCCATCCTT
* * *
1604262 TTCAAGATTAGGCACCATAAACATAGTCTTCTTATTAGGATACACGATATTGATGCTTTGGTTTC
128 TTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGCTTC
* * * * *
1604327 GCAAGAAAGGTATTTTTTCCCACCAATTTTTGTAAAGTCTATGTTCGTGCCGCAAATGAAACAAA
193 GCAAGAAAGGCATTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAA
* *
1604392 CAT-GAATCTAGTAATGATCTTCATTCATTTTGTGATTAGACACTGTAAACACATTCTCCTCGTT
258 CATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGACACTGTAAACACATTCTCCTCATT
* * * *
1604456 AGGATAAATTGATATTTATGATTTTCTTTTGCACGAGAATCTTTTCTTTGCCCTATTTTCCTTCA
323 AGGATAAA-TGATATTGATGATTTT-TTTT-C-TGA-AATCATTTCTTTGCCCTATTTTCCTTTA
*
1604521 AATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAG
383 AATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTCAAG
*
1604586 ACT-GCGAAGCCAAAAACAC-ATTCCT
448 ACTAG-GAAGCCAAAAACACAATCCCT
* * *
1604611 TCATTAGGAAACATGACATTGATGCTTTAGG-GTCACAAGAAAAGC-TTTCTTTTCACCATTTTT
1 TCATTAGGATACATGACATTGATGCTTT-GGTGTCGCAAGAAAAGCTTTTCTTTTCACCGTTTTT
*
1604674 CATAGAATCAAAGTTTGTCTCTT-AATATGACAAACATG-ATACTCATACTAATCCTCGA-CCTT
65 GATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCATACTAATCC-C-ATCCTT
** * * * * *
1604736 TTCAGGATTAGGCAGGATAAACGTAGTGTT-TAATTAGGATACATGATATTGATGCTTTAGCTTC
128 TTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGCTTC
* *
1604800 GC----AAGGCA-TTTTTCCCACCAAATTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAA
193 GCAAGAAAGGCATTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAA
* * * * *
1604860 TACGGATTCCAGAAATGATCTTCATTCATTTTGTGATTAGGCACTGTAAACACATTCTCCTCATT
258 CATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGACACTGTAAACACATTCTCCTCATT
*
1604925 AAGATAAATGATATTGATG
323 AGGATAAATGATATTGATG
1604944 CTTTGGTGTC
Statistics
Matches: 1118, Mismatches: 137, Indels: 74
0.84 0.10 0.06
Matches are distributed among these distances:
468 78 0.07
469 185 0.17
470 144 0.13
471 21 0.02
473 34 0.03
474 30 0.03
475 13 0.01
476 13 0.01
477 34 0.03
478 113 0.10
479 133 0.12
480 191 0.17
481 7 0.01
482 50 0.04
483 72 0.06
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (473 bp):
TCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTTCACCGTTTTTG
ATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCATACTAATCCCATCCTTTTC
AGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGCTTCGCA
AGAAAGGCATTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACAT
GGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGACACTGTAAACACATTCTCCTCATTAGG
ATAAATGATATTGATGATTTTTTTTCTGAAATCATTTCTTTGCCCTATTTTCCTTTAAATCAAAG
TTCATACCTTAAATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTCAAGACTAGGAA
GCCAAAAACACAATCCCT
Found at i:1605207 original size:317 final size:309
Alignment explanation
Indices: 1604599--1605261 Score: 888
Period size: 317 Copynumber: 2.1 Consensus size: 309
1604589 GCGAAGCCAA
* *
1604599 AAACACATTC-CTTCATTAGGA-AACATGACATTGATGCTTTAGGGTCACAAGAAAAGCTTTCTT
1 AAACACATTCTCCTCATTAGGATAA-ATGATATTGATGCTTTAGGGTCACAAGAAAAGCTTTCTT
*
1604662 TTCACCATTTTTCATAGAATCAAAGTTTGTCTCTTAATATGACAAACATGATACTCATACTAATC
65 TTCACCAGTTTTCATAGAATCAAAGTTTGTCTCTTAATATGACAAACATGATACTCATACTAATC
* ** * * * *
1604727 CTCGACCTTTTCAGGATTAGGCAGGATAAACGTAGTGTTTAATTAGGATACATGATATTGATGCT
130 CTCGACATTTTCAGGATTAGGCACCATAAACATAGTCTTTAATTAGGACACATCATATTGATGCT
* *
1604792 TTAGCTTCGCAAGGCATTTTTCCCACCAAATTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGAC
195 TTAGCTTCGAAAGGCATTTTTCCCACCAAATTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGAC
* * * *
1604857 AAATACGGATTCCAGAAATGATCTTCATTCATTTTGTGATTAGGCACTGT
260 AAATACGGATTCCAGAAACGATCTTCATTCATTTTGGGATTAGACACTAT
* *
1604907 AAACACATTCTCCTCATTAAGATAAATGATATTGATGCTTT-GGTGTCACAAGAAAAGTTTTTCT
1 AAACACATTCTCCTCATTAGGATAAATGATATTGATGCTTTAGG-GTCACAAGAAAAG-CTTTCT
* *
1604971 TTTCACC-GTTTTGATAGAATCAAAGTTTGTCTCTTAATATGATAAACATGTATACTCATACTAA
64 TTTCACCAGTTTTCATAGAATCAAAGTTTGTCTCTTAATATGACAAACATG-ATACTCATACTAA
** * *
1605035 TCC-CAGTTATTTTCAGGATTAGGCACCATAAACATCGTCTTCTCATTAGGACACATCATATTGA
128 TCCTC-GACATTTTCAGGATTAGGCACCATAAACATAGTCTT-TAATTAGGACACATCATATTGA
* * *
1605099 TGCTTTGGGCTTGCAAGAAAGGCATTTTTTTCCCGCCAATTTTTGTAAAGTCTAAGTTCATGCCT
191 TGCTTT-AGCTT-C--GAAAGGCA--TTTTTCCCACCAAATTTTGTAAAGTCTAAGTTCATGCCT
* * *
1605164 CAAATGAGACAAACT-TGGATTCTAGTAACGATCTTCATTCATTTTGGGATTAGACACTAT
250 CAAATGAGACAAA-TACGGATTCCAGAAACGATCTTCATTCATTTTGGGATTAGACACTAT
*
1605224 AAACACATTCTCCTCATTGGGATAAATGATATTGATGC
1 AAACACATTCTCCTCATTAGGATAAATGATATTGATGC
1605262 ATGCAAATCC
Statistics
Matches: 309, Mismatches: 32, Indels: 19
0.86 0.09 0.05
Matches are distributed among these distances:
308 12 0.04
309 78 0.25
310 58 0.19
311 25 0.08
312 4 0.01
313 1 0.00
315 7 0.02
317 123 0.40
318 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.35
Consensus pattern (309 bp):
AAACACATTCTCCTCATTAGGATAAATGATATTGATGCTTTAGGGTCACAAGAAAAGCTTTCTTT
TCACCAGTTTTCATAGAATCAAAGTTTGTCTCTTAATATGACAAACATGATACTCATACTAATCC
TCGACATTTTCAGGATTAGGCACCATAAACATAGTCTTTAATTAGGACACATCATATTGATGCTT
TAGCTTCGAAAGGCATTTTTCCCACCAAATTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACA
AATACGGATTCCAGAAACGATCTTCATTCATTTTGGGATTAGACACTAT
Found at i:1607059 original size:478 final size:476
Alignment explanation
Indices: 1604907--1608576 Score: 4383
Period size: 476 Copynumber: 7.7 Consensus size: 476
1604897 TAGGCACTGT
* * *
1604907 AAACACATTCTCC-TCATTAAGATAA-ATGATATTGATGCTTTGGTGTCACAAGAAAAGTTTTTC
1 AAACACATTC-CCTTCATTAGGA-AACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTC
* *
1604970 TTTTCACCG-TTTTGATAGAATCAAAGTTTGTCTCTT-AATATGATAAACATGTATACTCATACT
64 TTTTCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCATACT
** * *
1605033 AATCCCAGTTATTTTCAGGATTAGGCACCATAAACATCGTCTTCTCATTAGGACACATC-ATATT
129 AATCCCACCT-TTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACA-CGATATT
* * * * *
1605097 GATGCTTTGGGCTT-GCAAGAAAGGCATTTTTTTCCCGCCAATTTTTGTAAAGTCTAAGTTCATG
192 GATGCTTT-AGTTTCGCAAGAAAGTCA-TTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTG
* * * * *
1605161 CCTCAAATGAGACAAACTTGGATTCTAGTAACGATCTTCATTCATTTTGGGATTAGACACTATAA
255 CCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTGTAA
* * *
1605226 ACACATTCTCCTCATTGGGATAAATGATATTGATG-----C--ATGCA---AATCCTTTCTTTGC
320 ACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAATCTTTTCTTTGC
* * ** * * * * * *
1605281 CCTACTTTCCTTTACGTCAAAGTTCATGCCATAAATAAGCCAAGCATCGATTCTTGCAACAGACT
385 CCTATTTTCCTTCAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCT
*
1605346 CCAATCTTTTCAAGACTAGGAAGCCAA
450 CCATTCTTTTCAAGACTAGGAAGCCAA
* * ** * *
1605373 AAACACATTCCCTTCATTAGGATACATCACATTCCTACTTTGGTGTCGCAAGAAAAGCTTTT-TT
1 AAACACATTCCCTTCATTAGGAAACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTT
* * * * * * *
1605437 TCCATCG-ATTTGATAGAGTCAAAGTTTGTCTCTTAAAAACGACAAACATTAATACTCATACTAA
66 TTCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCATACTAA
** * *
1605501 TCCTC-GTTCTTTTCAGGATTAGGCCCCATAAACATAGTCTTCTCATTAGGATACATGATATTGA
131 TCC-CACCT-TTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGA
* ** * * * * *
1605565 TGCTTTGGACTC-CAAGAAAGGCATTTTTTTCCATCAATTTTAGTAAAGTCTAAGTTTCATGCCT
194 TGCTTTAGTTTCGCAAGAAAGTCATTTTTTCCCACCAATTTTTGTAAAGTCTAAG-TTCGTGCCT
*
1605629 CAAATGAGACAAACATGGATTATAGTAATGATCTTCATTCATTTTG-GAATTAGGCACTGTAAAC
258 CAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTG-ATTAGGCACTGTAAAC
* * * *
1605693 ACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTTACTTGGAAATCATTTCTTTGCC
322 ACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGG-AATCTTTTCTTTGCC
* * * * * *
1605758 ATGTTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGGCAAGCATCGATTCTTGTAATAGTCTC
386 CTATTTTCCTTCAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTC
*
1605823 CATTCTTTTTAAGACTAGGAAGCCAA
451 CATTCTTTTCAAGACTAGGAAGCCAA
* * * * * * * *
1605849 AAGCACAATCCCTTCATTAGGATACTTGACATTGACGCTTTGGTGTCGCGAGAAATGC-TTTC--
1 AAACACATTCCCTTCATTAGGAAACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTT
* * * * *
1605911 -T----GTTTTTTATAGAATCAAAGTTTGTCTCTTAAATATGAAAAACAAGAATACTCACACTGA
66 TTCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCATACTAA
* *
1605971 TGCCCATCC-TTTTCAAGATTAGGCACCATAAACATAGTCTTCTTATTAGGATACACGATATTGA
131 T-CCCA-CCTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGA
* *
1606035 TGCTTTAGTTTCGCAGGAAAGGT-A-TTTTTCCCACCAATTTTTGTAAAGTCTATGTTCGTGCCT
194 TGCTTTAGTTTCGCAAGAAA-GTCATTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCT
* * * * *
1606098 CAAATGAAACAAACATGGATTCTAATAACGATCTTCATCCATTTTGTGATTAAGCACTGTAAACA
258 CAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTGTAAACA
* *
1606163 CATTCTCCTCATTAGGATAGATGATATTGATGATTTTCTTTTTGCATGGGAATCTTTTCTTTACC
323 CATTCTCCTCATTAGGATAAATGATATTGATGATTTTC-TTTTGCAT-GGAATCTTTTCTTTGCC
* * *
1606228 CTATTTTTCTTCAAATCAAAGTTCATACCTTAAATAAGACAAGCATTGATTCTTGTAACAGTCTC
386 CTATTTTCCTTCAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTC
* *
1606293 TATTCTTTTCAAGACTAGGAAACCAA
451 CATTCTTTTCAAGACTAGGAAGCCAA
* * * * * *
1606319 AAGCACATTCCCTTCCTTAGG----AGGACATTGAAGCTTTGGTGTCACGAGAAATGCTTTTCTT
1 AAACACATTCCCTTCATTAGGAAACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTT
* * *
1606380 TTCACCGTTTTTTATAGAATCAAAGTTTGCCTCTTAAATATGA-AAACATGAATAATACTCACAC
66 TTCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATG---AATACTCATAC
* * * * *
1606444 TGATGCCCATCC-TTTTCAGGATTAGGCACCGTAAACATAGTCTTCTCATTAGAATACACAACAT
128 TAAT-CCCA-CCTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATAT
* * **
1606508 TGATGCTTTGGTTTCGCAAGAAAGGT-AATTTTTCCCACCAATTTTTGTAAAGTCTTTGTTCGTG
191 TGATGCTTTAGTTTCGCAAGAAA-GTCATTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTG
* * * **
1606572 CCCCAAATGAAACAAACATGGATTCTAGTAATGATATTCATTCATTTTGTGATTAGGCACAATAA
255 CCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTGTAA
* * * *
1606637 ACACATTCTCCTCATTAGGATAAATAATATTCACGATTTTCTTTTGCGTGAGAATCTTTTCTTTG
320 ACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATG-GAATCTTTTCTTTG
* ** * * *
1606702 CCCTATTTTCCTTCAAATCAAAGTTCATACCTTATATAAGGTAAGCATCGATTCTCATAATAGTT
384 CCCTATTTTCCTTCAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTC
1606767 TCCATTCTTTTCAAGACTAGGAAGCCAA
449 TCCATTCTTTTCAAGACTAGGAAGCCAA
1606795 AAACACATTCCCTTCATTAGGAAACATGACATTGATGCTTT-GTGGTCACAAGAAAAGCTTTTCT
1 AAACACATTCCCTTCATTAGGAAACATGACATTGATGCTTTGGT-GTCACAAGAAAAGCTTTTCT
* * *
1606859 TTCCACCGTTTTTGATAGAATCCAAGTTTGTCTCTTAAATATGACAAACATGAATACTCATACAA
65 TTTCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCATACTA
* * * * *
1606924 ATCCTCACCTTTTTCAGGATTAGGCACCATAAACGTAGTCTTTTAATTACGATACGCGATATTCG
130 ATCC-CACCTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATT-G
* * *
1606989 -TGCTTTAGTTTCGCAAGAAAGTCATTTTTTCCCACCAAATTTCGTAAAGTTTAAGTTCGTGCCT
193 ATGCTTTAGTTTCGCAAGAAAGTCATTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCT
* * * * *
1607053 CAAATGAGACAAACATAGAATCTAGTAATGATTTTCATTCAATTTGTGA-TA-GCACTATAAACA
258 CAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTGTAAACA
1607116 CATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATTGGAATCTTTTCTTTGCCC
323 CATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCA-TGGAATCTTTTCTTTGCCC
* *
1607181 TGTTTTCCTTCAAATCAAAGTTCATACCTTAAATACGACAAGCATCGATTCTCGTAACAGTCTCC
387 TATTTTCCTTCAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCC
* * * *
1607246 TTTCTTTTCAAGATTGGGAAGCCCA
452 ATTCTTTTCAAGACTAGGAAGCCAA
* * ** *
1607271 AAAC-CTTTCCCTCCATCGGGATAA-ATGACATTGATGCTTTGGTATCACAAGAAAAGCTTTTCT
1 AAACACATTCCCTTCATTAGGA-AACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCT
* ** *
1607334 TTTCACCATTTTTGATAGAATCAAAGTTTGTCT-TCTAAATACAACAAACAAGTAATGTATACTC
65 TTTCACCGTTTTTGATAGAATCAAAGTTTGTCTCT-TAAATATGACAAAC-----ATGAATACTC
*** * * *
1607398 ATACTAATCCCTGTTCTTTTCAGGATTAGACACCATAAACATAGCCTTGTCATTAGGATACATC-
124 ATACTAATCCCACCT-TTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACA-CG
* * * *
1607462 ATATTGATGCTTTGGTTACGCAAGAAAGGCA--TTTTCCCACCAATTTTAGTAAAGTCTAAGTTC
187 ATATTGATGCTTTAGTTTCGCAAGAAAGTCATTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTC
* *
1607525 ATGCCTTAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCA---T-TGATTAGGCACTG
252 GTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTG
* * *
1607586 TAAACACATTCTCCTCATTAGGATAAGTGATATTGATGAATTTTTTTTTTGCATGGAAATCCTTT
317 TAAACACATTCTCCTCATTAGGATAAATGATATTGATG-A-TTTTCTTTTGCATGG-AATCTTTT
* * *
1607651 CTTTGCCCTATTTTCCTTTAAATCAAAGTTCATAGCTTAAATAAGGCAAGCATCGATTCTTC-TA
379 CTTTGCCCTATTTTCCTTCAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTC-TCGTA
1607715 ACAGTCTCCATTCTTTTCAAGACTAGGAAGCCAA
443 ACAGTCTCCATTCTTTTCAAGACTAGGAAGCCAA
* * * * * * *
1607749 AAGCACATTCGCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCGAGAAATGCTTTTTTT
1 AAACACATTCCCTTCATTAGGAAACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTT
* * ** **
1607814 TTGCACCGTTTTTAATAGAATCAAAGTTTGTCTCTTAAATATGAAAAACATGAATACAGACCCTA
66 TT-CACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCATACTA
* * *
1607879 ATGCCCATCCTTTTT-AGGATTGGGCACCATAAACATAGTCTTCTCGTTAAGATACACGATATTG
130 AT-CCCA-CCTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTG
* * * *
1607943 ATGCTATAGTTTCGCAAGAAAAGT--TATTTTCCCACCAATTTTTGTAAAGTCTATGTTCGTGCT
193 ATGCTTTAGTTTCGCAAG-AAAGTCATTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCC
* *
1608006 TCAAATGAAACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGACACTGTAAAC
257 TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTGTAAAC
* ** * *
1608071 ACATTCTCCTCGTTAGGATAAATGATATTTCTGATTTTCTTTTGCACGAGAATGTTTTCTTTGCC
322 ACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATG-GAATCTTTTCTTTGCC
1608136 CTATTTTCCTTCAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTC
386 CTATTTTCCTTCAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTC
*
1608201 CATTCTTTTCAAGACT-GCAAAGCCAA
451 CATTCTTTTCAAGACTAG-GAAGCCAA
*
1608227 AAACACATTCTCTTCATTAGGAAACATGACATTGATGCTTTAGG-GTCACAAGAAAAGCTTTTCT
1 AAACACATTCCCTTCATTAGGAAACATGACATTGATGCTTT-GGTGTCACAAGAAAAGCTTTTCT
* * *
1608291 TTTCACCATTTTTCATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCGTACTA
65 TTTCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCATACTA
** * * * * *
1608356 ATTCTTGACC-TTTTCAGGATTAGGCAGCATAAACGTAGTGTTTTAATTAGGATACACGATATTG
130 A-TC-CCACCTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTG
* * * *
1608420 ATGCTTTAGTTTCGCAAG---G-CA-TTTTTCCTACCAAATTTCGTGAAGTCTAAGTTCGTGCCT
193 ATGCTTTAGTTTCGCAAGAAAGTCATTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCT
* * * *
1608480 CAAATGAGACAAATATGGATTCCAGAAATGATCTTCATTCATTTTGTGATTAGGCACTGTAAATA
258 CAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTGTAAACA
*
1608545 CATTCTCCTCATTAAGATAAATGATATTGATG
323 CATTCTCCTCATTAGGATAAATGATATTGATG
1608577 CTTTGGTGTC
Statistics
Matches: 2762, Mismatches: 349, Indels: 179
0.84 0.11 0.05
Matches are distributed among these distances:
464 28 0.01
465 147 0.05
466 163 0.06
467 5 0.00
469 102 0.04
470 256 0.09
471 11 0.00
472 3 0.00
473 126 0.05
474 41 0.01
475 166 0.06
476 640 0.23
477 263 0.10
478 500 0.18
479 62 0.02
480 240 0.09
481 9 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.35
Consensus pattern (476 bp):
AAACACATTCCCTTCATTAGGAAACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTT
TTCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCATACTAA
TCCCACCTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATG
CTTTAGTTTCGCAAGAAAGTCATTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAA
ATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTGTAAACACAT
TCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAATCTTTTCTTTGCCCTATT
TTCCTTCAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTC
TTTTCAAGACTAGGAAGCCAA
Found at i:1615707 original size:475 final size:474
Alignment explanation
Indices: 1614388--1616147 Score: 2271
Period size: 475 Copynumber: 3.7 Consensus size: 474
1614378 CACTGTAAAT
* * * *
1614388 ACATTCTCC-TCATTAAGATAAATGATATTGATGCTTTGGTGTCGCAAGAAAAGTTTTTCTTTTC
1 ACATTC-CCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTTC
* *
1614452 ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGATAAACATGTATACTCATACTAATCC
65 ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCATACTAATCC
** * *
1614517 CAGTTATTTTCAGGATTAGGCACCATAAACATCGTCTTCTCATTAGGACACATC-ATATTGATGC
130 CA-TCCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACA-CGATATTGATGC
*
1614581 TTTGGGCTT-GCAAGAAAGGCATTTTTCCCGCCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAA
193 TTT-GGCTTCGCAAGAAAGGCATTTTTCCCACCAA-TTTTGTAAAGTCTAAGTTCATGCCTCAAA
* * * *
1614645 TGAGACAAACTTGGATTCTAGTAACGATCTTCATTCATTTTGGGATTAGACACTATAAACACATT
256 TGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGACACTGTAAACACATT
* * * * * *
1614710 CTCCTCATTGGGATAAATGATA--T-TGA--TGC--ATG-C-A-AATCCTTTCTTTTCCCTACTT
321 CTCCTCATTAGGATAAATGATATTTATGATTTTCTTTTGCCGAGAATCATTTCTTTGCCCTATTT
** * * * * * *
1614765 TCCTTTACGTCAAAGTTCATGCCATAAATAAGCCAAGCATCGATTCTTGCAACAGACTCCAATCT
386 TCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCT
1614830 TTTCAAGACTAGGAAGCCAAAAAC
451 TTTCAAGACTAGGAAGCCAAAAAC
* ** *
1614854 ACATTCCCTTCATTAGGATACATCACATTCCTGCTTTGGTGTTGCAAGAAAAGCTTTT-TTTTCC
1 ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTT-C
* * * * * *
1614918 ATCG-ATTTGATAGAGTCAAAGTTTGTCTCTTAAAAACGACAAACATTAATACTCATACTAATCC
65 ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCATACTAAT-C
* * *
1614982 CCGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCT
129 CCATCCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCT
* *
1615047 TTGGAC-TCGCAAGAAAGGCATTTTTTTCCATCAATTTTAGTAAAGTCTAAGTTCATGCCTCAAA
194 TTGG-CTTCGCAAGAAAGGCA-TTTTTCCCACCAATTTT-GTAAAGTCTAAGTTCATGCCTCAAA
* *
1615111 TGAGACAAACATGGATTCTACTAATGATCTTCATTCATTTTG-GAATTAGGCACTGTAAACACAT
256 TGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTG-ATTAGACACTGTAAACACAT
* * * * * *
1615175 TCTCCGCATCAGGATAAATGATATTGATGATTTTTTTTTACTTG-GAAATCATTTCTTTGCCCTA
320 TCTCCTCATTAGGATAAATGATATTTATGATTTTCTTTTGC-CGAG-AATCATTTCTTTGCCCTA
* * *
1615239 TTTTCCTTTAAATGAAAGTTCATACCTTAAATAAGGCAAGCATCGATTCTTGTAATAGTCTCCAT
383 TTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTTGTAACAGTCTCCAT
*
1615304 TCTTTTCAAGACTAGGAAGCCAAAAGC
448 TCTTTTCAAGACTAGGAAGCCAAAAAC
* * *
1615331 ACAATCCCTTCATTAGGATAC-TAGACATTGATGCTTTGGTGTCGCGAGAAATGCTTTTC-TTTC
1 ACATTCCCTTCATTAGGATACAT-GACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTTC
* * * * *
1615394 GACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATATGAAAAACAAGAATACTCACACTGATG
65 -ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCATACTAAT-
* *
1615459 CCCATCCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTTATTAGGATACACGATATTGATGC
128 CCCATCCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGC
* * * *
1615524 TTTGGTTTCGCAAGAAAGGTATTTTTCCCACC-ATTTTGTAAAGTCTATGTTCGTGCCTCAAATG
193 TTTGGCTTCGCAAGAAAGGCATTTTTCCCACCAATTTTGTAAAGTCTAAGTTCATGCCTCAAATG
* *
1615588 AAACAAACATGGAATCTAGTAATGATCTTCATTCATTTTGTGATTAGACACTGTAAACACATTCT
258 AGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGACACTGTAAACACATTCT
* *
1615653 CCTCGTTAGGATAAATGATATTTATGATTTTCTTTTGCACGAGAATCTTTTCTTTGCCCTATTTT
323 CCTCATTAGGATAAATGATATTTATGATTTTCTTTTGC-CGAGAATCATTTCTTTGCCCTATTTT
* *
1615718 CCTTCAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTT
387 CCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTT
1615783 TTCAAGACT-GCGAAGCCAAAAAC
452 TTCAAGACTAG-GAAGCCAAAAAC
* *
1615806 ACATTCCCTTCATTAGGAAACATGACATTGATGCTTTAGG-GTCACAAGAAAAGCTTTTCTTTTC
1 ACATTCCCTTCATTAGGATACATGACATTGATGCTTT-GGTGTCGCAAGAAAAGCTTTTCTTTTC
* *
1615870 ACCATTTTTCATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCATACTAATCC
65 ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCATACTAATCC
** * * * * *
1615935 TCGA-CCTTTTCAGGATTAGGCAGGATAAACGTAGTGTTTTAATTAGGATACATGATATTGATGC
130 -C-ATCCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGC
* *
1615999 TTTAGCTTCGC----AAGGCATTTTTCCCACCAAATTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
193 TTTGGCTTCGCAAGAAAGGCATTTTTCCCACC-AATTTTGTAAAGTCTAAGTTCATGCCTCAAAT
* * * * *
1616060 GAGACAAATACGGATTCCAGAAATGATCTTCATTCATTTTGTGATTAGGCACTGTAAACACATTC
257 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGACACTGTAAACACATTC
*
1616125 TCCTCATTAAGATAAATGATATT
322 TCCTCATTAGGATAAATGATATT
1616148 GATGCTTTGG
Statistics
Matches: 1125, Mismatches: 133, Indels: 65
0.85 0.10 0.05
Matches are distributed among these distances:
464 3 0.00
465 134 0.12
466 166 0.15
469 3 0.00
471 17 0.02
473 110 0.10
474 3 0.00
475 386 0.34
476 17 0.02
477 160 0.14
478 126 0.11
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.35
Consensus pattern (474 bp):
ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTTCA
CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCATACTAATCCC
ATCCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTT
GGCTTCGCAAGAAAGGCATTTTTCCCACCAATTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGA
CAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGACACTGTAAACACATTCTCCT
CATTAGGATAAATGATATTTATGATTTTCTTTTGCCGAGAATCATTTCTTTGCCCTATTTTCCTT
TAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTCA
AGACTAGGAAGCCAAAAAC
Found at i:1618442 original size:476 final size:475
Alignment explanation
Indices: 1616115--1621294 Score: 6074
Period size: 476 Copynumber: 10.9 Consensus size: 475
1616105 TAGGCACTGT
* * * *
1616115 AAACACATTCTCC-TCATTAAGATAA-ATGATATTGATGCTTTGGTGTCACAAGAAAAGTTTTTC
1 AAACACATTC-CCTTCATTAGGA-AACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTC
* * *
1616178 TTTTCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGATAAACATGTATACTCATACT
64 TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCATACT
* * *
1616243 AATCCCAGTTATTTTCAGGATTAGGCACCATAAACATCGTCTTCTCATTAGGACACATCATATTG
129 AATCCCA-TTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACA-CATATTG
* * *
1616308 ATGCTTTGGGCTT-GCAAGAAAGGCATTTTTCCCGCCAATTTTTGTAAAGTCTAAGTTCATGCCT
192 ATGCTTT-GGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCT
* * * *
1616372 CAAATGAGACAAACTTGGATTCTAGTAACGATCTTCATTCATTTTGGGATTAGACACTATAAACA
256 CAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACA
* * *
1616437 CATTCTCCTCATTGGGATAAATGATA-T--TGA--------TGCATGCAAATCCTTTCTTTGCCC
321 CATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCC
* ** * * * * *
1616491 TACTTTCCTTTACGTCAAAGTTCATGCCATAAATAAGCCAAGCATCGATTCTTGCAACAGACTCC
386 TATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGGCAAGCATCGATTCTTGTAACAGTCTCC
*
1616556 AATCTTTTCAAGACTAGGAAGCCAA
451 ATTCTTTTCAAGACTAGGAAGCCAA
* * **
1616581 AAACACATTCCCTTCATTAGGATACATCACATTCCTGCTTTGGTGTCGCAAGAAAAGCTTTT-TT
1 AAACACATTCCCTTCATTAGGAAACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT
* * * * * *
1616645 TCCATCG-ATTTGATAGAGTCAAAGTTTGTCTCTTAAAAACGACAAACATTAATACTCATACTAA
66 TCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCATACTAA
* *
1616709 TCCCCGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGAT
131 T-CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACA-CATATTGAT
** * * * * *
1616774 GCTTTGGACTCCCAAGAAAGGCATTTTTTTCCATCAATTTTAGTAAAGTCTAAGTTCATGCCTCA
194 GCTTTGGTTTCGCAAGAAAGGCA-TTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCA
* * *
1616839 AATGAGACAAACATGGACTATAGTAATGATCTTCATTCATTTTG-GAATTAGGCACTGTAAACAC
258 AATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTG-ATTAGGCACTATAAACAC
* * * * *
1616903 ATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTTACTTGGAAATCATTTCTTTGCCAT
322 ATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCT
* *
1616968 GTTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGGCAAGCATCGATTCTTGTAATAGTCTCCA
387 ATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGGCAAGCATCGATTCTTGTAACAGTCTCCA
*
1617033 TTCTTTTTAAGACTAGGAAGCCAA
452 TTCTTTTCAAGACTAGGAAGCCAA
* * * * * * *
1617057 AAGCACAATCCCTTCATTAGGATACTTGACATTGACGCTTTGGTGTCGCGAGAAATGC-TTTC--
1 AAACACATTCCCTTCATTAGGAAACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT
* * * * *
1617119 T-----GTTTTTTATAGAATCAAAGTTTGTCTCTTAAATATGAAAAACAAGAATACTCACACTGA
66 TCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCATACTAA
* * *
1617179 TGCCCATCCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTTATTAGGATACACGATATTGAT
131 T-CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACAC-ATATTGAT
* * * *
1617244 GCTTTGGTTTTGCAGGAAAGGTATTTTTCCCACCAATTTTTGTAAAGTCTATGTTCGTGCCTCAA
194 GCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAA
* * * * * *
1617309 ATGAAACAAACATGGATTCTAATAACGATCTTCATCCATTTTGTGATTAAGCACTGTAAACACAT
259 ATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAT
* * *
1617374 TCTCCTCATTAGGATAGATGATATTGATGATTTTCTTTTTGCATGGGAATCTTTTCTTTACCCTA
324 TCTCCTCATTAGGATAAATGATATTGATGATTTTC-TTTTGCATGGAAATCTTTTCTTTGCCCTA
* * * * *
1617439 TTTTTCTTCAAATCAAAGTTCATACCTTAAATAAGACAAGCATTGATTCTTGTAACAGTCTCTAT
388 TTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGGCAAGCATCGATTCTTGTAACAGTCTCCAT
*
1617504 TCTTTTCAAGACTAGGAAACCAA
453 TCTTTTCAAGACTAGGAAGCCAA
* * * * * *
1617527 AAGCACATTCCCTTCCTTAGG----AGGACATTGAAGCTTTGGTGTCGCGAGAAATGCTTTTCTT
1 AAACACATTCCCTTCATTAGGAAACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT
* * * * *
1617588 TTCACCGTTTTTTATAGAATCAAAGTTTGCCTCTTAAATATGAAAAACATGAATAATACTCACAC
66 TCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATG---AATACTCATAC
* * * * *
1617653 TGATGCCCATCCTTTTCAGGATTAGGCACCGTAAACATAGTCTTCTCATTAGAATACACAACATT
128 TAAT-CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACAC-ATATT
* **
1617718 GATGCTTTGGTTTCGCAAGAAAGGTAATTTTTCCCACCAATTTTTGTAAAGTCTTTGTTCGTGCC
191 GATGCTTTGGTTTCGCAAGAAAGG-CATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCC
* * * *
1617783 CCAAATGAAACAAACATGGATTCTAGTAATGATATTCATTCATTTTGTGATTAGGCACAATAAAC
255 TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAAC
* * *
1617848 ACATTCTCCTCATTAGGATAAATAATATTCATGATTTTCTTTTGCATGGGAATCTTTTCTTTGCC
320 ACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
* * * * ** *
1617913 CTATTTTCCTTCAATTCTAAGTTCATACCTTATATAAGGCAAGCATCGATTCTCATAATAGTCTC
385 CTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGGCAAGCATCGATTCTTGTAACAGTCTC
*
1617978 CATTCTTTTCAAGACTGGGAAGCCAA
450 CATTCTTTTCAAGACTAGGAAGCCAA
* **
1618004 AAACACATTCCCTTCATTAGGAAACATGACATTGATGCTTTGGGGTTACAAGAAAAGCTTTTCTT
1 AAACACATTCCCTTCATTAGGAAACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT
* *
1618069 TCCACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATATGATAAACATGAATACTCATACTAA
66 TCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCATACTAA
** * * * * * *
1618134 TCCTCACCCTTTTCAGGATTAGGCAGCATAAACATAGTCTTTTAATTATGATACGCGATATTCAT
131 TCC-CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACAC-ATATTGAT
* * * *
1618199 GCTTTAGTTTCGCAAGAAAGGCATTTTTCCCACCAAATTTCGTAAAGTTTAAGTTCGTGCCTCAA
194 GCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAA
* * * * * *
1618264 ATGAGACAAACATAGAATCTAGTAATGATTTTCATTCAATTTGTGATTA-ACACTGTAAACACAT
259 ATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAT
* *
1618328 TCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGGAATCTTTTCTTTGCCCTGT
324 TCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTAT
* * * ** *
1618393 TTTCCTTCAAATCAAAGTTCATACCTTAAATAAGACAAGCATTGATTCTCATAACAGTCTCCTTT
389 TTTCCTTTAAATCAAAGTTCATACCTTAAATAAGGCAAGCATCGATTCTTGTAACAGTCTCCATT
* * *
1618458 CTTTTCAAGATTGGGAAGCCCA
454 CTTTTCAAGACTAGGAAGCCAA
* * * *
1618480 AAACACTTTCCCTCCATTGGGATAA-ATGACATTGATGCTTTGGTATCGCAAGAAAAGCTTTTCT
1 AAACACATTCCCTTCATTAGGA-AACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCT
* * * **
1618544 TTTCACCATTTTTGATAGAATCAAAGTTTGTCTTTTAAATACAACAAACATGTAATGTATACTCA
65 TTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATG--A---ATACTCA
* * *
1618609 TACTAATATCCCTATTCTTTTCAGGATTAGACACCATAAACATAGCCTTGTCATTAGGATACATC
125 TACT-A-ATCCC-ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACA-C
* * *
1618674 ATATTGATGCTTTGGTTACGCAAGAAAGGCA-TTTTCCCACCAATTTTAGTAAAGTCTAAGTTCA
186 ATATTGATGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCG
* * * * *
1618738 TGCCTTAAATGAGACAAACATAGATTCTAGTAATAATCTTCATTCA----ATGATTAGGCACTGT
251 TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
* * *
1618799 AAACACATTCTCCTAATTAGGATAAATGATATTGATGATTTTTTTTTTTGCATGGAAATCCTTTC
316 AAACACATTCTCCTCATTAGGATAAATGATATTGATGA--TTTTCTTTTGCATGGAAATCTTTTC
* * * *
1618864 TTTGCCCAATTTTCCTTTAAATCAAAGTTCATAGCTTAAGTAACGCAAGCATCGATTCTTGTAAC
379 TTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGGCAAGCATCGATTCTTGTAAC
* *
1618929 AATCTCCATTATTTTCAAGACTAGGAAGCCAA
444 AGTCTCCATTCTTTTCAAGACTAGGAAGCCAA
* * * * * *
1618961 AAGCACATTCGCTTCATTAGGATATATGACATTGATGCTTTGGTGTCGCGAGAAATGCTTTT-TT
1 AAACACATTCCCTTCATTAGGAAACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT
* * * * * ** ** *
1619025 TCCCACCGTTTTTAATAGAATCAAAGTTTGCCTCTTAAAGATGAAAAACATGAAGACAGACCCTG
66 T-CCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCATACTA
* * *
1619090 ATGCCCATCCTTTTCAGGATTGGGCACCATAAACATAGTCTTCTCATTAAGATACACGATATTGA
130 AT-CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACAC-ATATTGA
* * * * *
1619155 TGCTTTGGTTTTGCAAGAAAAGTATTTTTCCCACCAATTTTTGTAAAGTCTATGTTCGTGCTTCA
193 TGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCA
* * *
1619220 AATGAAACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGACACTGTAAACACA
258 AATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACA
* * * * *
1619285 TTCTCCTCATTAGGATAAATGATATTGATAAATTTTTTTTTTGCTTGGAAATCATTTATTTGCCC
323 TTCTCCTCATTAGGATAAATGATATTGAT-GA-TTTTCTTTTGCATGGAAATCTTTTCTTTGCCC
* * * *
1619350 TATTTTCATTTAAATCAAAGTTCATACCTTAAATAAGGCAAGCATTGATTCTTGTAATAGTCTCA
386 TATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGGCAAGCATCGATTCTTGTAACAGTCTCC
* * *
1619415 ATTCTTTTCAAGATTTGGATGCC-A
451 ATTCTTTTCAAGACTAGGAAGCCAA
* * *
1619439 AAACACATTCCCTTCATTAGGGCAA-ATGACATTGATGCTTTTGG-GTTGCAAGAAAAGATTTTC
1 AAACACATTCCCTTCATTA-GGAAACATGACATTGATGC-TTTGGTGTCGCAAGAAAAGCTTTTC
*
1619502 TTT-CACCCGTTTTTGATAGAATCAAATTTTGTCTCTTAAATATGACAAACATGAATACTCATAC
64 TTTCCA-CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCATAC
* * * * *
1619566 TAATCCCCATTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTCATTTGAATACATCATAAT
128 TAAT-CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACA-CATATT
* * *
1619631 GATGCTTTGGTTTTGCGAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCT
191 GATGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCT
* * * * * *
1619696 CAAATGAGATAAACATGGATTCTAGTAAAGACCTTCGA-TCATTTTATGATTAGGTACTACAAAC
256 CAAATGAGACAAACATGGATTCTAGTAATGATCTTC-ATTCATTTTGTGATTAGGCACTATAAAC
* * * * * *
1619760 ACAATCTGCTCTTTAGGATAAACGATATTGATGATTTTATTTTGCATGGAAATCTTTTCTTTACC
320 ACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
* **
1619825 CTATTATT-CTTAAAATCAAAGTTCAT-CCTTTAAATAAGGCAAGCATCGATTCTCATAACAGTC
385 CTATT-TTCCTTTAAATCAAAGTTCATACC-TTAAATAAGGCAAGCATCGATTCTTGTAACAGTC
*
1619888 TCCATTCTTTTCAAGA-TTGAGAAG-CAA
448 TCCATTCTTTTCAAGACTAG-GAAGCCAA
* * ** * * *
1619915 AAACATATTCCTTTCATTAGGATGCAAGACATTGATGCTCTGGTGTCGTAAGAAAAGCTTTTCTT
1 AAACACATTCCCTTCATTAGGAAACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT
* * * * * * * *
1619980 TCCACCGTTTTTAACAGAATCAAAGTTTATCTCTTAAATACGACAAACAAGAATATTGATAATAA
66 TCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCATACTAA
* * * * * * *
1620045 TCCCTTTTTTTTTCAGGATTAGGTACCATAAACGTAGTCTTCTTATTAAGATACACAACATTGAT
131 TCCC-ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACAC-ATATTGAT
* * * *
1620110 GC-TTGGTTTTGCAAGGAAGGC-TTTCTTCCCCCCAATTTTTATAAAGTCTAAGTTCGTGCCTCA
194 GCTTTGGTTTCGCAAGAAAGGCATTT-TTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCA
* * * *
1620173 AATGAGACAAACATGGATTCTAGTAAAGATCTTTATTCATTTGGTGATTTGGCACTATAAACACA
258 AATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACA
* **
1620238 TTCTCCTCATTAGGATAAATGATATTGATAATTTT-TTTTTTATGGAAATCTTTTCTTTGCCCTA
323 TTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTA
* * * * * ** *
1620302 TTTTCCTTAAAATCAAAGTTCAT-CTTTTAAATATGGAAAGCATTGATTCTCATAATAGTCTCCA
388 TTTTCCTTTAAATCAAAGTTCATAC-CTTAAATAAGGCAAGCATCGATTCTTGTAACAGTCTCCA
* * * * *
1620366 TCCTTTTTAAGATTGGGAAG-CGA
452 TTCTTTTCAAGACTAGGAAGCCAA
* * * *
1620389 AAACACACTT-GCTTCATTA--AAGTACAAGACATTGATGCTTTGGTGTTGTAAGAAAAGCTTTT
1 AAACACA-TTCCCTTCATTAGGAA--ACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTT
* * *
1620451 CTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTGAATACGACAAACATGAATACTCATAC
63 CTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCATAC
* * *
1620516 TAATCCCTATTCTTTTTAGGATTAGGCAGCATAAACATAGTCTCCTCATTAGGATACATCATATT
128 TAATCCC-ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACA-CATATT
* * * *
1620581 GATGCTTTGGTTTCGCAAGAAAGGCATTTTTTTCAATCCAATTTTTGTAAAGTCTAAGTTCATTC
191 GATGCTTTGGTTTCGCAAGAAAGGCA-TTTTTCCCA-CCAATTTTTGTAAAGTCTAAGTTCGTGC
** * * * * ** * * *
1620646 CTTTAATGAGATACATATGGATTCTAGTAAAGATCTTTTTTCATTTTTTGAATAGGTACTATAAA
254 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * *
1620711 CA-ATTCTCCTC-TTCAAGATAAATGATATTGATGATTTTATTTTGCATGAAAATCTTTTCTTTG
319 CACATTCTCCTCATT-AGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTG
* * *
1620774 CCCTATTTTCCTTAAAATCAAAGTTCAT-CCTTTAAATAAGGCAAGCCTCGATTCTTGTAGCAGT
383 CCCTATTTTCCTTTAAATCAAAGTTCATACC-TTAAATAAGGCAAGCATCGATTCTTGTAACAGT
* * * *
1620838 CTCCATTCTTTTCATGATTTGGATGCC-A
447 CTCCATTCTTTTCAAGACTAGGAAGCCAA
** * *
1620866 AAACACATTCCCTTCATTAGGATGCATGATATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTT
1 AAACACATTCCCTTCATTAGGAAACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT
* * * ** *
1620931 TCAACCGTTTTCGATAAAATCAAAGTTTGTCTCTTAAATGCGACAAACATGAATACTCAAACTAA
66 TCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCATACTAA
* * * *
1620996 TCCCCATTCTTCTCAGGATTAGGCACCAT-AACGTAGTCTCCTCATTAGGATACATCATATTGAC
131 T-CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACA-CATATTGAT
* * * * *
1621060 GCTTTGGTTTTGCAGGAAAGGCTTTTTTCCTACCAATTTTTGTAAAGTCTAAGTTCGTGACTCAA
194 GCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAA
* * * *
1621125 ATGAGACAAACATGGATTCTTGTAATGATATTCATTC-TTTTGGTCATTAGACACTATAAACACA
259 ATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTT-GTGATTAGGCACTATAAACACA
* * *
1621189 TTCTCCTAAATAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTA
323 TTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTA
1621254 TTTTCC-TTACAATCAAAGTTCAT-CCTTTAAATAAGGCAAGC
388 TTTTCCTTTA-AATCAAAGTTCATACC-TTAAATAAGGCAAGC
1621295 CACATTTAGG
Statistics
Matches: 4056, Mismatches: 556, Indels: 195
0.84 0.12 0.04
Matches are distributed among these distances:
463 3 0.00
464 123 0.03
465 130 0.03
466 80 0.02
467 4 0.00
468 3 0.00
469 128 0.03
470 244 0.06
472 1 0.00
473 7 0.00
474 455 0.11
475 359 0.09
476 738 0.18
477 620 0.15
478 511 0.13
479 211 0.05
480 5 0.00
481 287 0.07
482 73 0.02
483 73 0.02
484 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (475 bp):
AAACACATTCCCTTCATTAGGAAACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT
TCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCATACTAA
TCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACATATTGATGC
TTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTT
TCCTTTAAATCAAAGTTCATACCTTAAATAAGGCAAGCATCGATTCTTGTAACAGTCTCCATTCT
TTTCAAGACTAGGAAGCCAA
Found at i:1621574 original size:396 final size:394
Alignment explanation
Indices: 1620915--1622086 Score: 1886
Period size: 396 Copynumber: 3.0 Consensus size: 394
1620905 TTGGTGTCGT
* * **
1620915 AAGAAAAGCTTTTCTTT-CAACCGTTTTCGATAAAATCAAAGTTTGTCTCTTAAATGCGACAAAC
1 AAGAAAAGCTTTT-TTTGC-ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAAC
* ** * * * * * *
1620979 ATGAATACTCAAACTAATCCCCATTCTTCTCAGGATTAGGCACCAT-AACGTAGTCTCCTCATTA
64 ATGAATACTCATACTAATCCCTGTTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTCATTT
* * * * * *
1621043 GGATACATCATATTGACGCTTTGGTTTTGCAGGAAAGGCTTTTTTCCTACCAATTTTTGTAAAGT
129 GAATAGATCATAATGATGCTTTGGTTTTGCAAGAAAGGC-TTTTTCCCACCAATTTTTGTAAAGT
*
1621108 CTAAGTTCGTGACTCAAATGAGACAAACATGGATTCTTGTAATGATATTCATTCTTTTGGTCATT
193 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTTGTAATGATATTCATTCTTTTGGTCATT
1621173 AGACACTATAAACACATTCTCCTAAATAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAA
258 AGACACTATAAACACATTCTCCTAAATAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAA
1621238 TCTTTTCTTTGCCCTATTTTCCTTACAATCAAAGTTCATCCTTTAAATAAGGCAAGCCACATTTA
323 TCTTTTCTTTGCCCTATTTTCCTTACAATCAAAGTTCATCCTTTAAATAAGGCAAGCCACATTTA
1621303 GGGTTCC
388 GGGTTCC
1621310 AAGAAAAGCTTTTTTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACAT
1 AAGAAAAGCTTTTTTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACAT
1621375 GAATACTCATACTAATCCCTGTTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTCATTTGA
66 GAATACTCATACTAATCCCTGTTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTCATTTGA
*
1621440 ATAGATCATAATGATGCTTTGGTTTCGCAAGAAAGGCATTTTGTCCCACCAATTTTTGTAAAGTC
131 ATAGATCATAATGATGCTTTGGTTTTGCAAGAAAGGC-TTTT-TCCCACCAATTTTTGTAAAGTC
1621505 TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTTGTAATGATATTCATTCTTTTGGTCATTA
194 TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTTGTAATGATATTCATTCTTTTGGTCATTA
*
1621570 GACACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAAT
259 GACACTATAAACACATTCTCCTAAATAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAAT
* * *
1621635 CTTTTCCTTGCCCTATTTTCCTTACAATCAAAGTTCATCCTTTAAATAAGGCAAGCCACGTTTGG
324 CTTTTCTTTGCCCTATTTTCCTTACAATCAAAGTTCATCCTTTAAATAAGGCAAGCCACATTTAG
*
1621700 GGTTGC
389 GGTTCC
1621706 AAGAAAAGCTTTTTTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACAT
1 AAGAAAAGCTTTTTTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACAT
1621771 GAATACTCATACTAATCCCTGTTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTCATTTGA
66 GAATACTCATACTAATCCCTGTTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTCATTTGA
*
1621836 ATAGATCATAATGATGCTTTGGTTTTGCAAGAAAGGCGTTTTTCCCACCAATTTTTCTAAAGTCT
131 ATAGATCATAATGATGCTTTGGTTTTGCAAGAAAGGC-TTTTTCCCACCAATTTTTGTAAAGTCT
* * * * *
1621901 AAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCGTTCATTTT-GTGATTA
195 AAGTTCGTGCCTCAAATGAGACAAACATGGATTCTTGTAATGATATTCATTC-TTTTGGTCATTA
** ** *
1621965 GGTACTATAAACACATTCTGCTCTTCA-A-GATAAATGATATTGATGATTTTATTTTGCATGAAA
259 GACACTATAAACACATTCT-C-CTAAATAGGATAAATGATATTGATGATTTTCTTTTGCATGAAA
*
1622028 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCC
322 ATCTTTTCTTTGCCCTATTTTCCTTACAATCAAAGTTCATCCTTTAAATAAGGCAAGCC
1622087 TCGATTCTTG
Statistics
Matches: 729, Mismatches: 42, Indels: 12
0.93 0.05 0.02
Matches are distributed among these distances:
394 84 0.12
395 250 0.34
396 392 0.54
397 3 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (394 bp):
AAGAAAAGCTTTTTTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACAT
GAATACTCATACTAATCCCTGTTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTCATTTGA
ATAGATCATAATGATGCTTTGGTTTTGCAAGAAAGGCTTTTTCCCACCAATTTTTGTAAAGTCTA
AGTTCGTGCCTCAAATGAGACAAACATGGATTCTTGTAATGATATTCATTCTTTTGGTCATTAGA
CACTATAAACACATTCTCCTAAATAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCT
TTTCTTTGCCCTATTTTCCTTACAATCAAAGTTCATCCTTTAAATAAGGCAAGCCACATTTAGGG
TTCC
Found at i:1622408 original size:475 final size:475
Alignment explanation
Indices: 1621706--1622561 Score: 1333
Period size: 475 Copynumber: 1.8 Consensus size: 475
1621696 TTGGGGTTGC
* * * *
1621706 AAGAAAAGCTTTTTTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACAT
1 AAGAAAAGCTTTTTTTCCACCGTTTTCGATAAAATCAAAGTTTGTCTCTTAAATACGACAAACAT
* * * * *
1621771 GAATACTCATACTAATCCCTGTTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTCATTTGA
66 GAATACTCAAACTAATCCCTATTCTTCTCAAGATTAGACACCATAAACATAGTCTCCTCATTAGA
* * *
1621836 ATAGATCATAATGATGCTTTGGTTTTGCAAGAAAGGCGTTTTTCCCACCAATTTTTCTAAAGTCT
131 ATACATCATAATGACGCTTTGGTTTCGCAAGAAAGGCGTTTTTCCCACCAATTTTTCTAAAGTCT
** * * *
1621901 AAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCGTTCATTTT-GTGATTA
196 AAGTTCGTAACTCAAATGAGACAAACATGGATTCTAGTAAAGATATTCATTC-TTTTGGTCATTA
** * *
1621965 GGTACTATAAACACATTCTGCTC-TTCAAGATAAATGATATTGATGATTTTATTTTGCATGAAAA
260 GACACTATAAACACATTCTCCTCAAT-AAGATAAATGATATTGATGATTTTATTTTGCATGAAAA
1622029 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCCTCGATTC
324 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCCTCGATTC
1622094 TTGTAGCAGTCTCCATTCTTTTCATGATTTGGATGCCAAAACACATTCCCTTTATTAGGATGCAT
389 TTGTAGCAGTCTCCATTCTTTTCATGATTTGGATGCCAAAACACATTCCCTTTATTAGGATGCAT
1622159 GATATTGATGCTTTGGTGTCCT
454 GATATTGATGCTTTGGTGTCCT
1622181 AAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTGTCTCTTAAATACGACAAACA
1 AAGAAAAGCTTTT-TTTCCACCGTTTTCGATAAAATCAAAGTTTGTCTCTTAAATACGACAAACA
* * *
1622246 TGAATACTCAAACTAAT-CCTCATTCTTCTCAGGATTAGGCACCAT-AACGTAGTCTCCTCATTA
65 TGAATACTCAAACTAATCCCT-ATTCTTCTCAAGATTAGACACCATAAACATAGTCTCCTCATTA
* * * * * *
1622309 GGATACATCATATTGACGCTTTGGTTTCGCAGGAAAGGCTTTTTTCCTACCAATTTTTGTAAAGT
129 GAATACATCATAATGACGCTTTGGTTTCGCAAGAAAGGCGTTTTTCCCACCAATTTTTCTAAAGT
* *
1622374 CTAAGTTCGTAACTCAAATGAGACAAACATGGATTCTTGTAATGATATTCATTCTTTTGGTCATT
194 CTAAGTTCGTAACTCAAATGAGACAAACATGGATTCTAGTAAAGATATTCATTCTTTTGGTCATT
* *
1622439 AGACACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAA
259 AGACACTATAAACACATTCTCCTCAATAAGATAAATGATATTGATGATTTTATTTTGCATGAAAA
*
1622504 TCTTTTCTTTGCCCTATTTTCCTTACAATCAAAGTTCATCCTTTAAATAAGGCAAGCC
324 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCC
1622562 ACGTTTGGGG
Statistics
Matches: 342, Mismatches: 35, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
474 4 0.01
475 254 0.74
476 84 0.25
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (475 bp):
AAGAAAAGCTTTTTTTCCACCGTTTTCGATAAAATCAAAGTTTGTCTCTTAAATACGACAAACAT
GAATACTCAAACTAATCCCTATTCTTCTCAAGATTAGACACCATAAACATAGTCTCCTCATTAGA
ATACATCATAATGACGCTTTGGTTTCGCAAGAAAGGCGTTTTTCCCACCAATTTTTCTAAAGTCT
AAGTTCGTAACTCAAATGAGACAAACATGGATTCTAGTAAAGATATTCATTCTTTTGGTCATTAG
ACACTATAAACACATTCTCCTCAATAAGATAAATGATATTGATGATTTTATTTTGCATGAAAATC
TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCCTCGATTCTT
GTAGCAGTCTCCATTCTTTTCATGATTTGGATGCCAAAACACATTCCCTTTATTAGGATGCATGA
TATTGATGCTTTGGTGTCCT
Found at i:1622483 original size:870 final size:868
Alignment explanation
Indices: 1621310--1623429 Score: 3329
Period size: 870 Copynumber: 2.4 Consensus size: 868
1621300 TTAGGGTTCC
* *
1621310 AAGAAAAGCTTTTTTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACAT
1 AAGAAAAGCTTTTTTTCCACCG-TTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACAT
* * * * *
1621375 GAATACTCATACTAATCCCTGTTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTCATTTGA
65 GAATACTCAAACTAATCCC-GTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGG
* * *
1621440 ATAGATCATAATGATGCTTTGGTTTCGCAAGAAAGGCATTTTGTCCCACCAATTTTTGTAAAGTC
129 ATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTTTTCCCACCAATTTTTGTAAAGTC
1621505 TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTTGTAATGATATTCATTCTTTTGGTCATTA
193 TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTTGTAATGATATTCATTCTTTTGGTCATTA
1621570 GACACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAAT
258 GACACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAAT
1621635 CTTTTCCTTGCCCTATTTTCCTTACAATCAAAGTTCATCCTTTAAATAAGGCAAGCCACGTTTGG
323 CTTTTCCTTGCCCTATTTTCCTTACAATCAAAGTTCATCCTTTAAATAAGGCAAGCCACGTTTGG
1621700 GGTTGCAAGAAAAGCTTTTTTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGAC
388 GGTTGCAAGAAAAGCTTTTTTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGAC
1621765 AAACATGAATACTCATACTAATCCCTGTTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTC
453 AAACATGAATACTCATACTAATCCCTGTTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTC
* *
1621830 ATTTGAATAGATCATAATGATGCTTTGGTTTTGCAAGAAAGGCGTTTTTCCCACCAATTTTTCTA
518 ATTTGAATAGATCATAATGATGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTCTA
1621895 AAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCGTTCATTTTGT
583 AAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCGTTCATTTTGT
1621960 GATTAGGTACTATAAACACATTCTGCTC-TTCAAGATAAATGATATTGATGATTTTATTTTGCAT
648 GATTAGGTACTATAAACACATTCTGCTCATT-AAGATAAATGATATTGATGATTTTATTTTGCAT
* * * * *
1622024 GAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCCTC
712 GAAAATCTTTTCCTTACCCTATTTTCCTTAAAATCAAAGTTAATCCTTTAAATAAAGCAAGCATC
* ** * * * * *
1622089 GATTCTTGTAGCAGTCTCCATTCTTTTCATGATTTG-GATGCCAAAACACATTCCCTTTATTAGG
777 CATTCTCATAACAGTCTCCATTCTTTTCAAGA-TTGAGAAGCAAAAACACATTCCCTTCATTAGG
1622153 ATGCATGATATTGATGCTTTGGTGTCCT
841 ATGCATGATATTGATGCTTTGGTGTCCT
*
1622181 AAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTGTCTCTTAAATACGACAAACA
1 AAGAAAAGCTTTT-TTTCCACCGTTTT-GATAGAATCAAAGTTTGTCTCTTAAATACGACAAACA
* * * *
1622246 TGAATACTCAAACTAATCCTCATTCTTCTCAGGATTAGGCACCAT-AACGTAGTCTCCTCATTAG
64 TGAATACTCAAACTAATCC-CGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAG
* * *
1622310 GATACATCATATTGACGCTTTGGTTTCGCAGGAAAGGCTTTTTTCCTACCAATTTTTGTAAAGTC
128 GATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTC
**
1622375 TAAGTTCGTAACTCAAATGAGACAAACATGGATTCTTGTAATGATATTCATTCTTTTGGTCATTA
193 TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTTGTAATGATATTCATTCTTTTGGTCATTA
1622440 GACACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAAT
258 GACACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAAT
*
1622505 CTTTTCTTTGCCCTATTTTCCTTACAATCAAAGTTCATCCTTTAAATAAGGCAAGCCACGTTTGG
323 CTTTTCCTTGCCCTATTTTCCTTACAATCAAAGTTCATCCTTTAAATAAGGCAAGCCACGTTTGG
1622570 GGTTGCAAGAAAAGCTTTTTTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGAC
388 GGTTGCAAGAAAAGCTTTTTTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGAC
*
1622635 AAACATGAATACTCATACTAATCCTTGTTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTC
453 AAACATGAATACTCATACTAATCCCTGTTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTC
*
1622700 ATTTGAATAGATCATAATGATGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTGTA
518 ATTTGAATAGATCATAATGATGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTCTA
*
1622765 AAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCGTTCATTTTGT
583 AAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCGTTCATTTTGT
*
1622830 GATTAGGTACTATAAACACATTCTGCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATG
648 GATTAGGTACTATAAACACATTCTGCTCATTAAGATAAATGATATTGATGATTTTATTTTGCATG
* * *
1622895 AAAATCTTTTCCTTACCTTATTTTTCTTAAAATTAAAGTTAATCCTTTAAATAAAGCAAGCATCC
713 AAAATCTTTTCCTTACCCTATTTTCCTTAAAATCAAAGTTAATCCTTTAAATAAAGCAAGCATCC
*
1622960 ATTCTCATAATAGTCTCCATTCTTTTCAAGATTGAGAAGCAAAAACACATTCCCTTCATTAGGAT
778 ATTCTCATAACAGTCTCCATTCTTTTCAAGATTGAGAAGCAAAAACACATTCCCTTCATTAGGAT
*
1623025 GCATGATATTGATGCTTTGGTGTCGT
843 GCATGATATTGATGCTTTGGTGTCCT
* * * *
1623051 AAAAAAAGCTTTTATTTCCATCGTTTGTGACAGAATCAAAGTTTGTCAT-TTAAATACGACACAC
1 AAGAAAAGCTTTT-TTTCCACCGTTT-TGATAGAATCAAAGTTTGTC-TCTTAAATACGACAAAC
* * * * * * *
1623115 AAGAATTCTGATAA-TAATCCCCGTTTTTTTTAGGATTAGGTACCATAAACATAGTCTTCTTATT
63 ATGAATACTCA-AACTAAT-CCCGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATT
* * * * *
1623179 AGGATACA-CGAT-TTGATGCTTTAGTTTTGCAAGAAAGGCTTTCTTCCCCCCAATTTTTATAAA
126 AGGATACATC-ATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAA
* * * * * * * *
1623242 GTCTAAATTCGCGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTAGTGA
190 GTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTTGTAATGATATTCATTCTTTTGGTCA
* * * * *
1623307 TTTGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTACAATGG
255 TTAGACACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTTTTGC-ATGA
* * * * *
1623372 AAATCTTTT-CTTAGCCTTATTCTCCTTAAAATCAAAGTTCATCTTTTAAATATGGCAA
319 AAATCTTTTCCTT-GCCCTATTTTCCTTACAATCAAAGTTCATCCTTTAAATAAGGCAA
1623430 TCATCGATTC
Statistics
Matches: 1145, Mismatches: 91, Indels: 26
0.91 0.07 0.02
Matches are distributed among these distances:
869 3 0.00
870 910 0.79
871 150 0.13
872 81 0.07
873 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (868 bp):
AAGAAAAGCTTTTTTTCCACCGTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATG
AATACTCAAACTAATCCCGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGAT
ACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAA
GTTCGTGCCTCAAATGAGACAAACATGGATTCTTGTAATGATATTCATTCTTTTGGTCATTAGAC
ACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTT
TTCCTTGCCCTATTTTCCTTACAATCAAAGTTCATCCTTTAAATAAGGCAAGCCACGTTTGGGGT
TGCAAGAAAAGCTTTTTTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAA
CATGAATACTCATACTAATCCCTGTTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTCATT
TGAATAGATCATAATGATGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTCTAAAG
TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCGTTCATTTTGTGAT
TAGGTACTATAAACACATTCTGCTCATTAAGATAAATGATATTGATGATTTTATTTTGCATGAAA
ATCTTTTCCTTACCCTATTTTCCTTAAAATCAAAGTTAATCCTTTAAATAAAGCAAGCATCCATT
CTCATAACAGTCTCCATTCTTTTCAAGATTGAGAAGCAAAAACACATTCCCTTCATTAGGATGCA
TGATATTGATGCTTTGGTGTCCT
Found at i:1622844 original size:395 final size:395
Alignment explanation
Indices: 1622181--1622955 Score: 1149
Period size: 395 Copynumber: 2.0 Consensus size: 395
1622171 TTGGTGTCCT
1622181 AAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTGTCTCTTAAATACGACAAACA
1 AAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTGTCTCTTAAATACGACAAACA
* * * *
1622246 TGAATACTCAAACTAATCCTCATTCTTCTCAGGATTAGGCACCATAACGTAGTCTCCTCATTAGG
66 TGAATACTCAAACTAATCCTCATTCTTCTCAAGATTAGACACCATAACATAGTCTCCTCATTAGA
* * * *
1622311 ATACATCATATTGACGCTTTGGTTTCGCAGGAAAGGCTTTTTTCCTACCAATTTTTGTAAAGTCT
131 ATACATCATAATGACGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTCT
* *
1622376 AAGTTCGTAACTCAAATGAGACAAACATGGATTCTTGTAATGATATTCATTCTTTTGGTCATTAG
196 AAGTTCGTAACTCAAATGAGACAAACATGGATTCTAGTAAAGATATTCATTCTTTTGGTCATTAG
*
1622441 ACACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATC
261 ACACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTATTTTGCATGAAAATC
* * * * *
1622506 TTTTCTTTGCCCTATTTTCCTTACAATCAAAGTTCATCCTTTAAATAAGGCAAGCCACGTTTGGG
326 TTTTCCTTACCCTATTTTCCTTAAAATCAAAGTTAATCCTTTAAATAAAGCAAGCCACGTTTGGG
1622571 GTTGC
391 GTTGC
* * * *
1622576 AAGAAAAGCTTTT-TTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACA
1 AAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTGTCTCTTAAATACGACAAACA
* ** * * *
1622640 TGAATACTCATACTAATCCTTGTTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTCATTTG
66 TGAATACTCAAACTAATCCTCATTCTTCTCAAGATTAGACACCAT-AACATAGTCTCCTCATTAG
* *
1622705 AATAGATCATAATGATGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTC
130 AATACATCATAATGACGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTC
* ** * * *
1622770 TAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCGTTCATTTT-GTGATT
195 TAAGTTCGTAACTCAAATGAGACAAACATGGATTCTAGTAAAGATATTCATTC-TTTTGGTCATT
** * *
1622834 AGGTACTATAAACACATTCTGCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGAAAA
259 AGACACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTATTTTGCATGAAAA
* * *
1622899 TCTTTTCCTTACCTTATTTTTCTTAAAATTAAAGTTAATCCTTTAAATAAAGCAAGC
324 TCTTTTCCTTACCCTATTTTCCTTAAAATCAAAGTTAATCCTTTAAATAAAGCAAGC
1622956 ATCCATTCTC
Statistics
Matches: 337, Mismatches: 41, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
394 86 0.26
395 247 0.73
396 4 0.01
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.37
Consensus pattern (395 bp):
AAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTGTCTCTTAAATACGACAAACA
TGAATACTCAAACTAATCCTCATTCTTCTCAAGATTAGACACCATAACATAGTCTCCTCATTAGA
ATACATCATAATGACGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTCT
AAGTTCGTAACTCAAATGAGACAAACATGGATTCTAGTAAAGATATTCATTCTTTTGGTCATTAG
ACACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTATTTTGCATGAAAATC
TTTTCCTTACCCTATTTTCCTTAAAATCAAAGTTAATCCTTTAAATAAAGCAAGCCACGTTTGGG
GTTGC
Found at i:1623522 original size:476 final size:476
Alignment explanation
Indices: 1622576--1624802 Score: 2936
Period size: 476 Copynumber: 4.7 Consensus size: 476
1622566 TTGGGGTTGC
* *
1622576 AAGAAAAGCTTTT-TTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACA
1 AAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACA
* ** * * * * *
1622640 TGAATACTCATACTAATCCTTGTTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTCATTTG
66 AGAATACTCATACTAATCCCCGTTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTTATTAG
* * *
1622705 AATAGATCATAATGATGCTTTGGTTTCGCAAGAAAGGCATTT-TTCCCACCAATTTTTGTAAAGT
131 GATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTCTTCCCACCAATTTTTGTAAAGT
* **
1622769 CTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCGTTCATTTTGTGATT
195 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTTATTCATTTTGTGATT
* *
1622834 AGGTACTATAAACACATTCTGCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGAAAA
260 AGGTACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGGAAA
* * * * *
1622899 TCTTTTCCTTACCTTATTTTTCTTAAAATTAAAGTTAATCCTTTAAATAAAGCAAGCATCCATTC
325 TCTTTTCTTTACCTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAAGCAAGCATCGATTC
* *
1622964 TCATAATAGTCTCCATTCTTTTCAAGATTGAGAAGCAAAAACACATTCCCTTCATTAGGATGCAT
390 TCATAATAGCCTCCATTCTTTTCAAGATTGAGAAGCAAAAACACATTCCCTTCATTAGGATACAT
*
1623029 GATATTGATGCTTTGGTGTCGT
455 GACATTGATGCTTTGGTGTCGT
* * * * * *
1623051 AAAAAAAGCTTTTATTTCCATCGTTTGTGACAGAATCAAAGTTTGTCAT-TTAAATACGACACAC
1 AAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTC-TCTTAAATACGACAAAC
* * * * *
1623115 AAGAATTCTGATAATAATCCCCGTTTTTTTTAGGATTAGGTACCATAAACATAGTCTTCTTATTA
65 AAGAATACTCATACTAATCCCCGTTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTTATTA
* * * *
1623180 GGATACA-CGAT-TTGATGCTTTAGTTTTGCAAGAAAGGCTTTCTTCCCCCCAATTTTTATAAAG
130 GGATACATC-ATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAG
* * * *
1623243 TCTAAATTCGCGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTAGTGAT
194 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTTATTCATTTTGTGAT
* * * *
1623308 TTGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTACAATGGA
259 TAGGTACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGC-ATGGA
* * ** *
1623373 AATCTTTTC-TTAGCCTTATTCTCCTTAAAATCAAAGTTCATCTTTTAAATATGGCAATCATCGA
323 AATCTTTTCTTTA-CCTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAAGCAAGCATCGA
* * *
1623437 TTCTCGTAATAGCCTCTATTC-TTTCTAAGATTGGGAAGCAAAAACACATTCCCTTCATTAGGAT
387 TTCTCATAATAGCCTCCATTCTTTTC-AAGATTGAGAAGCAAAAACACATTCCCTTCATTAGGAT
1623501 ACATGACATTGATGCTTTGGTGTCGT
451 ACATGACATTGATGCTTTGGTGTCGT
** *
1623527 AAGAAAAGCTTTTCTTTTCCACTATTTTTGATAGAATCAAATTTTGTCTCTTAAATACGACAAAC
1 AAGAAAAGCTTTTC-TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAAC
* * * *
1623592 AAGAATACTCATACTAATCCCCATTCTTTTTAGGATTAGACAGCGTAAACATAGTCTTCTTATTA
65 AAGAATACTCATACTAATCCCCGTTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTTATTA
* * * *
1623657 GGATACATCATATTGATGCTTCGGTTTCGCAAGAAAGGCTTTTTTTTCACGCCAATTTTTGTAAA
130 GGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGC--TTTCTTCCCACCAATTTTTGTAAA
* * * * * * * *
1623722 GTCTAAGTTCGTGCCTCTAATGAGATACATATAGATTCTAGTAAATATCTTTTTTCATTTTTTGA
193 GTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTTATTCATTTTGTGA
* *
1623787 ATAGGTACTATAAACA-ATTCTCCTC-TTCGGGATAAATGATATTGATGATTTTATTTTGCATGG
258 TTAGGTACTATAAACACATTCTCCTCATT-AGGATAAATGATATTGATGATTTTATTTTGCATGG
* * * *
1623850 AAATCTTTTCTTTACGTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAACAAACCAAGCTTCGA
322 AAATCTTTTCTTTACCTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAAGCAAGCATCGA
* * * * * * *
1623915 TTCTCATTATAGCCCCCATTCCTTTT-AAGATTGGGAATCGAACACACATTCCCTTTATTAGGAT
387 TTCTCATAATAGCCTCCATT-CTTTTCAAGATTGAGAAGCAAAAACACATTCCCTTCATTAGGAT
* * *
1623979 ACACGAAATTGATGCTTTGGTGTCAT
451 ACATGACATTGATGCTTTGGTGTCGT
* * * * *
1624005 AAGAGAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTGTCTCTCAAATACAACAAACA
1 AAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACA
* * ** *
1624070 TGAATACTCATACTAATCCCCGTTCTTTTTAGGATTAGGCACCACAAATGTAGTCTTCTCATTAG
66 AGAATACTCATACTAATCCCCGTTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTTATTAG
* * *
1624135 GATACATCATAATGATGCTTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTC
131 GATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTC
* * * *
1624200 TAAGTTTGTGCCTCAAATAAGACAAACATGGATTCTAGTAAAGATCTTTGTTCATTTTATGATTA
196 TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTTATTCATTTTGTGATTA
* * * *
1624265 GGTACTACAAACACAATCTGCTCATTAGGATAAACGATATTGATGATTTTATTTTGCATGGAAAT
261 GGTACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGGAAAT
* * *
1624330 CTTTTCTTTACCCTATTTTTCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCATCGATTCT
326 CTTTTCTTTACCTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAAGCAAGCATCGATTCT
* * * * * * * * *
1624395 CAAAACAGTCTCCATTTTTTTCAAGATTGAGAAGCAAAAACATATTCCTTTCATTACGATGCAAG
391 CATAATAGCCTCCATTCTTTTCAAGATTGAGAAGCAAAAACACATTCCCTTCATTAGGATACATG
1624460 ACATTGATGCTTTGGTGTCGT
456 ACATTGATGCTTTGGTGTCGT
* ** *
1624481 AAGAAAACCTTTTCTTTCCACCGTTTTTGGGAGAATCAAAGTTTGTCTCTTAAATACGACAAATA
1 AAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACA
* * * * * *
1624546 AGAATACTGATAATAAT-CCC-TTTTTTTTCAGGATTAGGTACCATAAACGTAGTCTTCCTATTA
66 AGAATACTCATACTAATCCCCGTTCTTTTT-AGGATTAGGCACCATAAACATAGTCTTCTTATTA
* * * * *
1624609 GGATACATGACATTGATGCTTTGGTTTCGCAA-AGAAGGCTTTCTTCCCCCCAAATTTTATAAAG
130 GGATACATCATATTGATGCTTTGGTTTCGCAAGA-AAGGCTTTCTTCCCACCAATTTTTGTAAAG
1624673 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTTATTCATTTTGTGAT
194 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTTATTCATTTTGTGAT
* ** *
1624738 TTGGCGCTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTT-TTTT-TATGGAA
259 TAGGTACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGGAA
1624801 AT
324 AT
1624803 TGTAGACACT
Statistics
Matches: 1511, Mismatches: 219, Indels: 46
0.85 0.12 0.03
Matches are distributed among these distances:
473 8 0.01
474 15 0.01
475 462 0.31
476 483 0.32
477 244 0.16
478 169 0.11
479 41 0.03
480 89 0.06
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (476 bp):
AAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACA
AGAATACTCATACTAATCCCCGTTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTTATTAG
GATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTC
TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTTATTCATTTTGTGATTA
GGTACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGGAAAT
CTTTTCTTTACCTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAAGCAAGCATCGATTCT
CATAATAGCCTCCATTCTTTTCAAGATTGAGAAGCAAAAACACATTCCCTTCATTAGGATACATG
ACATTGATGCTTTGGTGTCGT
Found at i:1624450 original size:954 final size:952
Alignment explanation
Indices: 1622576--1624802 Score: 2994
Period size: 954 Copynumber: 2.3 Consensus size: 952
1622566 TTGGGGTTGC
* *
1622576 AAGAAAAGC-TTT-TTTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAAC
1 AAGAAAAGCTTTTCTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAAC
* ** * * * *
1622639 ATGAATACTCATACTAATCCTTGTTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTCATTT
66 AAGAATACTCATACTAATCC-CCTTCTTTTTAGGATTAGACACCATAAACATAGTCTTCTTATTA
* * * *
1622704 GAATAGATCATAATGATGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGT
130 GGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGT
* **
1622769 CTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCGTTCATTTTGTGATT
195 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTTATTCATTTTGTGATT
* *
1622834 AGGTACTATAAACACATTCTGCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGAAAA
260 AGGTACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGGAAA
* * * *
1622899 TCTTTTCCTTACCTTATTTTTCTTAAAATTAAAGTTAATCCTTTAAATAAAGCAAGCATCCATTC
325 TCTTTTCCTTACCTTATTTTCCTTAAAATCAAAGTTAATCCTTTAAACAAACCAAGCATCCATTC
* * * *
1622964 TCATAATAGTCTCCATTCTTTTCAAGATTGAGAAGCAAAAACACATTCCCTTCATTAGGATGCAT
390 TCATAATAGCCCCCATTCTTTTCAAGATTGAGAAGCAAAAACACATTCCCTTCATTAGGATACAC
* * * *
1623029 GATATTGATGCTTTGGTGTCGTAAAAAAAGCTTTTATTTCCATCGTTTGTGACAGAATCAAAGTT
455 GAAATTGATGCTTTGGTGTCATAAAAAAAGCTTTTATTTCCACCGTTTGTGACAAAATCAAAGTT
* * * * * * *
1623094 TGTCATTTAAATACGACACACAAGAATTCTGATAATAATCCCCGTTTTTTTTAGGATTAGGTACC
520 TGTCATTCAAATACAACAAACAAGAATACTCATAATAATCCCCGTTCTTTTTAGGATTAGGCACC
* * *
1623159 ATAAACATAGTCTTCTTATTAGGATACACGATTTGATGCTTTAGTTTTGCAAGAAAGGCTTTCTT
585 ACAAACATAGTCTTCTCATTAGGATACACGATATGATGCTTTAGTTTTGCAAGAAAGGCTTTCTT
* * *
1623224 CCCCCCAATTTTTATAAAGTCTAAATTCGCGCCTCAAATGAGACAAACATGGATTCTAGTAATGA
650 CCCACCAATTTTTATAAAGTCTAAATTCGCGCCTCAAATAAGACAAACATGGATTCTAGTAAAGA
* * * *
1623289 TCTTTATTCATTTAGTGATTTGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGAT
715 TCTTTATTCATTTAGTGATTAGGCACTACAAACACAATCTCCTCATTAGGATAAACGATATTGAT
* * *
1623354 GATTTTCTTTTACAATGGAAATCTTTTCTTAGCCTTATTCTCCTTAAAATCAAAGTTCATCTTTT
780 GATTTTATTTTACAATGGAAATCTTTTCTTAGCCCTATTCTCCTTAAAATCAAAGTTCATCCTTT
* * ** * * *
1623419 AAATATGGCAATCATCGATTCTCGTAATAGCCTCTATTCTTTCTAAGATTGGGAAGCAAAAACAC
845 AAATAAGGCAAGCATCGATTCTCAAAACAGCCTCCATTCTTTCTAAGATTGAGAAGCAAAAACAC
* *
1623484 ATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGT
910 ATTCCCTTCATTACGATACAAGACATTGATGCTTTGGTGTCGT
** *
1623527 AAGAAAAGCTTTTCTTTTCCACTATTTTTGATAGAATCAAATTTTGTCTCTTAAATACGACAAAC
1 AAGAAAAGCTTTTCTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAAC
* *
1623592 AAGAATACTCATACTAATCCCCATTCTTTTTAGGATTAGACAGCGTAAACATAGTCTTCTTATTA
66 AAGAATACTCATACTAATCCCC-TTCTTTTTAGGATTAGACACCATAAACATAGTCTTCTTATTA
* * *
1623657 GGATACATCATATTGATGCTTCGGTTTCGCAAGAAAGGCTTTTTTTTCACGCCAATTTTTGTAAA
130 GGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGC--TTTTTTCCCACCAATTTTTGTAAA
* * * * * * * *
1623722 GTCTAAGTTCGTGCCTCTAATGAGATACATATAGATTCTAGTAAATATCTTTTTTCATTTTTTGA
193 GTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTTATTCATTTTGTGA
* *
1623787 ATAGGTACTATAAACA-ATTCTCCTC-TTCGGGATAAATGATATTGATGATTTTATTTTGCATGG
258 TTAGGTACTATAAACACATTCTCCTCATT-AGGATAAATGATATTGATGATTTTATTTTGCATGG
* * * * *
1623850 AAATCTTTTCTTTACGTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAACAAACCAAGCTTCGA
322 AAATCTTTTCCTTACCTTATTTTCCTTAAAATCAAAGTTAATCCTTTAAACAAACCAAGCATCCA
* * * * * *
1623915 TTCTCATTATAGCCCCCATTCCTTTT-AAGATTGGGAATCGAACACACATTCCCTTTATTAGGAT
387 TTCTCATAATAGCCCCCATT-CTTTTCAAGATTGAGAAGCAAAAACACATTCCCTTCATTAGGAT
* * * *
1623979 ACACGAAATTGATGCTTTGGTGTCATAAGAGAAGCTTTTCTTTCCACCGTTT-TCGATAAAATCA
451 ACACGAAATTGATGCTTTGGTGTCATAAAAAAAGCTTTTATTTCCACCGTTTGT-GACAAAATCA
* *
1624043 AAGTTTGTC-TCTCAAATACAACAAACATGAATACTCATACTAATCCCCGTTCTTTTTAGGATTA
515 AAGTTTGTCAT-TCAAATACAACAAACAAGAATACTCATAATAATCCCCGTTCTTTTTAGGATTA
** *
1624107 GGCACCACAAATGTAGTCTTCTCATTAGGATACATC-ATAATGATGCTTTGGTTTTGCAAGAAAG
579 GGCACCACAAACATAGTCTTCTCATTAGGATACA-CGAT-ATGATGCTTTAGTTTTGCAAGAAAG
* * * * *
1624171 GCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATAAGACAAACATGGATTCT
642 GCTTTCTTCCCACCAATTTTTATAAAGTCTAAATTCGCGCCTCAAATAAGACAAACATGGATTCT
* * *
1624236 AGTAAAGATCTTTGTTCATTTTA-TGATTAGGTACTACAAACACAATCTGCTCATTAGGATAAAC
707 AGTAAAGATCTTTATTCA-TTTAGTGATTAGGCACTACAAACACAATCTCCTCATTAGGATAAAC
* * *
1624300 GATATTGATGATTTTATTTTGC-ATGGAAATCTTTTCTTTA-CCCTATTTTTCTTAAAATCAAAG
771 GATATTGATGATTTTATTTTACAATGGAAATCTTTTC-TTAGCCCTATTCTCCTTAAAATCAAAG
* *
1624363 TTCATCCTTTAAATAAGGCAAGCATCGATTCTCAAAACAGTCTCCATT-TTTTTCAAGATTGAGA
835 TTCATCCTTTAAATAAGGCAAGCATCGATTCTCAAAACAGCCTCCATTCTTTCT-AAGATTGAGA
* * *
1624427 AGCAAAAACATATTCCTTTCATTACGATGCAAGACATTGATGCTTTGGTGTCGT
899 AGCAAAAACACATTCCCTTCATTACGATACAAGACATTGATGCTTTGGTGTCGT
* ** *
1624481 AAGAAAACCTTTTC-TTTCCACCGTTTTTGGGAGAATCAAAGTTTGTCTCTTAAATACGACAAAT
1 AAGAAAAGCTTTTCTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAAC
* * * ** * *
1624545 AAGAATACTGATAATAAT-CCCTTTTTTTTCAGGATTAGGTACCATAAACGTAGTCTTCCTATTA
66 AAGAATACTCATACTAATCCCCTTCTTTTT-AGGATTAGACACCATAAACATAGTCTTCTTATTA
* * * * * *
1624609 GGATACATGACATTGATGCTTTGGTTTCGCAA-AGAAGGCTTTCTTCCCCCCAAATTTTATAAAG
130 GGATACATCATATTGATGCTTTGGTTTCGCAAGA-AAGGCTTTTTTCCCACCAATTTTTGTAAAG
1624673 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTTATTCATTTTGTGAT
194 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTTATTCATTTTGTGAT
* ** *
1624738 TTGGCGCTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTT-TTTT-TATGGAA
259 TAGGTACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGGAA
1624801 AT
324 AT
1624803 TGTAGACACT
Statistics
Matches: 1108, Mismatches: 150, Indels: 38
0.85 0.12 0.03
Matches are distributed among these distances:
949 8 0.01
950 92 0.08
951 49 0.04
952 70 0.06
953 204 0.18
954 429 0.39
955 252 0.23
956 4 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (952 bp):
AAGAAAAGCTTTTCTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAAC
AAGAATACTCATACTAATCCCCTTCTTTTTAGGATTAGACACCATAAACATAGTCTTCTTATTAG
GATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTC
TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTTATTCATTTTGTGATTA
GGTACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGGAAAT
CTTTTCCTTACCTTATTTTCCTTAAAATCAAAGTTAATCCTTTAAACAAACCAAGCATCCATTCT
CATAATAGCCCCCATTCTTTTCAAGATTGAGAAGCAAAAACACATTCCCTTCATTAGGATACACG
AAATTGATGCTTTGGTGTCATAAAAAAAGCTTTTATTTCCACCGTTTGTGACAAAATCAAAGTTT
GTCATTCAAATACAACAAACAAGAATACTCATAATAATCCCCGTTCTTTTTAGGATTAGGCACCA
CAAACATAGTCTTCTCATTAGGATACACGATATGATGCTTTAGTTTTGCAAGAAAGGCTTTCTTC
CCACCAATTTTTATAAAGTCTAAATTCGCGCCTCAAATAAGACAAACATGGATTCTAGTAAAGAT
CTTTATTCATTTAGTGATTAGGCACTACAAACACAATCTCCTCATTAGGATAAACGATATTGATG
ATTTTATTTTACAATGGAAATCTTTTCTTAGCCCTATTCTCCTTAAAATCAAAGTTCATCCTTTA
AATAAGGCAAGCATCGATTCTCAAAACAGCCTCCATTCTTTCTAAGATTGAGAAGCAAAAACACA
TTCCCTTCATTACGATACAAGACATTGATGCTTTGGTGTCGT
Found at i:1625134 original size:13 final size:13
Alignment explanation
Indices: 1625116--1625140 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1625106 CATAAAGTGT
1625116 TGTATCGATACAA
1 TGTATCGATACAA
1625129 TGTATCGATACA
1 TGTATCGATACA
1625141 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1625142 original size:33 final size:33
Alignment explanation
Indices: 1625096--1625162 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
1625086 TTCAACGATT
1625096 TGTATCGAGACATAAAGTGTTGTATCGATACAA
1 TGTATCGAGACATAAAGTGTTGTATCGATACAA
* *** *
1625129 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGAGACATAAAGTGTTGTATCGATACAA
1625162 T
1 T
1625163 TTAAGCTACT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.33, C:0.12, G:0.16, T:0.39
Consensus pattern (33 bp):
TGTATCGAGACATAAAGTGTTGTATCGATACAA
Found at i:1625221 original size:13 final size:13
Alignment explanation
Indices: 1625203--1625227 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1625193 ATTACTCAAA
1625203 TGTATCGATACAT
1 TGTATCGATACAT
1625216 TGTATCGATACA
1 TGTATCGATACA
1625228 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1625292 original size:52 final size:52
Alignment explanation
Indices: 1625236--1625468 Score: 430
Period size: 52 Copynumber: 4.5 Consensus size: 52
1625226 CACTGATCTT
*
1625236 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
1625288 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
1625340 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
1625392 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
1625444 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
1625469 TCATATTTCG
Statistics
Matches: 179, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
52 179 1.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:1629844 original size:478 final size:475
Alignment explanation
Indices: 1628517--1630120 Score: 2008
Period size: 478 Copynumber: 3.4 Consensus size: 475
1628507 GTTACGACAG
* * * * *
1628517 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCTTTTAAATATGGCAAGCATTGA
1 AAATCTTTTCTTTACCTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCATCGA
* * * * ** *
1628582 TTCTCATAA-TGTCTCCA-TCCTTTTTAAGATTGGGAAGCGAAAACGCACTCGGTTCATTAAGAT
66 TTCTCATAACAGTCTCCATTCC-TTTTAAGATT-GGAAGCCAAAACACATTCACTTCATTAGGAT
* * * *
1628645 ACATGACATTGATGCTTTGGGGTTGTAAGAAAAGCTTTTCTTTCCACCATTTTTGGTAGAATCAA
129 ACATGACATTGATGCTTTGGGGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAA
* *
1628710 AGTTTGTCTCTTAAATACGACAAACATGAATACTCATACTAATCCCAATTCTTTT-TAGAATTAG
194 AGTTTGTCTCTTAAATACGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAAG-ATTAG
* *
1628774 GCAGCATAAACATAGTCTTCTTATTAGGATACATCATATTGATGCTTTGGTTTTGCAAGAAAGGC
258 GCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTTGCAAGAAAGGC
* * ** * * *
1628839 TTTTTTTTCACTCCAATTTTTGTAAAGTCTAAGTTCGTGCCTTTAATGAGATACATATGGATTCT
323 -TTTTTTCCA-ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCT
** * *
1628904 AGTAAAGATCTTTTTTCATTTTGG-GAATAGGTACTATAAACA-ATTCTCCTCTTCAAGATAAAT
386 AGTAAAGATCTTCATTCATTTTGGTGATTAGGTACTATAAACACATTCTCCTCTT-AGGATAAAT
* * * *
1628967 CATATTGATGATTTTATTCTGCATGG
450 GATATTGATGATTTTCTTTTGCATGA
* * * ** *
1628993 AAATCTTTTCTTTACGTTATTTTCCTTAAAATCAAAGTTTATCCTTTAAACAAACCAAGCTTCGA
1 AAATCTTTTCTTTACCTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCATCGA
* * * * **
1629058 TTCTCATAATAGCCCCCATTCCTTTTAAGATTGGGAA-CCGAACACACATTCACTTTTTTAGGAT
66 TTCTCATAACAGTCTCCATTCCTTTTAAGATT-GGAAGCC-AAAACACATTCACTTCATTAGGAT
* * ** * *
1629122 ACATGAAATTGATGCTTTGGTGTCATAAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAA
129 ACATGACATTGATGCTTTGGGGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAA
* * * *
1629187 AGTTTGTCTCTCAAATACGTCAAACATGAATACTCAAACTAATCCCCATTCTTTTCAGGATTAGG
194 AGTTTGTCTCTTAAATACGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGG
* * * * *
1629252 CACCAT-AACGTAGTCTCCTCATTAGGATACATCATATTGACGCTTTGGTTTCGCAGGAAAGGCT
259 CACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTTGCAAGAAAGGCT
* * *
1629316 TTTTTCCTACCAATTTTTGTAAAGTCTAAGTTCGTGACTCAAATGAGACAAACATCGATTCTAGT
324 TTTTTCCAACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGT
* ** * ** * *
1629381 AATGAAATTCATTC-TTTTGGTCATTAGACACTATAAACACAATCTCCTCAATAGGATAAATGAT
389 AAAGATCTTCATTCATTTTGGTGATTAGGTACTATAAACACATTCTCCTC-TTAGGATAAATGAT
1629445 ATTGATGATTTTCTTTTGCATGA
453 ATTGATGATTTTCTTTTGCATGA
* *
1629468 AAATCTTTTCTTTGCCTTATTTTCCTTACAATCAAAGTTCATCCTTTAAATAAGGCAAGCCA-CG
1 AAATCTTTTCTTTACCTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAG-CATCG
** * ** *
1629532 ATTCTCATAACAGTCTCCATTTTTTTTTTCATGATTTGGTTGCCAAAACACATTCCCTTCATTAG
65 ATTCTCATAACAGTCTCCA--TTCCTTTT-AAGA-TTGGAAGCCAAAACACATTCACTTCATTAG
* * * *
1629597 GGTAAATGACATTGATGCTTTGGGGTTGCAAGAAAAGCTTTT-TTTGCACCGTTTTTGATAGAAT
126 GATACATGACATTGATGCTTTGGGGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAAT
* * *
1629661 CCAAGTTTGTCTCTTAAATATGACAAACATGAATACTCATACTAATCCCCGTTCTTTTCAAGATT
191 CAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAAGATT
* * * * *
1629726 AGACACCATAAACATAGTCTTCTCATTTGAATAGATCATAATGATGCTTTGGTTTTGCAAGAAAG
256 AGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTTGCAAGAAAG
*
1629791 GCTTTTTTCCAACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAAGAGACAAACATGGATTCT
321 GCTTTTTTCCAACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCT
* * *
1629856 AGTAAAGATCTTCGTTCATTTT-GTGATTAGGTGCTATAAACACATTCTGCTCGTTAGGATAAAT
386 AGTAAAGATCTTCATTCATTTTGGTGATTAGGTACTATAAACACATTCTCCTC-TTAGGATAAAT
1629920 GATATTGATGATTTTCTTTTGCATGA
450 GATATTGATGATTTTCTTTTGCATGA
* * *
1629946 AAATCTTTTCTTTATCTTATTTTTCTTAAAATCAAAGTTGATCCTTTAAATAAGGCAAGCATCGA
1 AAATCTTTTCTTTACCTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCATCGA
* ** *
1630011 TTCTCATAACAGTCTCCATT-CTTTTCAAGATTGAGAAGCAAAAACACATTTTCTTCATTAGAAT
66 TTCTCATAACAGTCTCCATTCCTTTT-AAGATTG-GAAGCCAAAACACATTCACTTCATTAGGAT
* * *
1630075 GCATGACACTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA
129 ACATGACATTGATGCTTTGGGGTCGCAAGAAAAGCTTTTCTTTCCA
1630121 TTATGACACA
Statistics
Matches: 957, Mismatches: 153, Indels: 36
0.84 0.13 0.03
Matches are distributed among these distances:
473 6 0.01
474 75 0.08
475 180 0.19
476 124 0.13
477 248 0.26
478 316 0.33
479 8 0.01
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.37
Consensus pattern (475 bp):
AAATCTTTTCTTTACCTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCATCGA
TTCTCATAACAGTCTCCATTCCTTTTAAGATTGGAAGCCAAAACACATTCACTTCATTAGGATAC
ATGACATTGATGCTTTGGGGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAG
TTTGTCTCTTAAATACGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCA
CCATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTTGCAAGAAAGGCTTT
TTTCCAACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAA
AGATCTTCATTCATTTTGGTGATTAGGTACTATAAACACATTCTCCTCTTAGGATAAATGATATT
GATGATTTTCTTTTGCATGA
Found at i:1630512 original size:443 final size:443
Alignment explanation
Indices: 1629679--1630560 Score: 1230
Period size: 443 Copynumber: 2.0 Consensus size: 443
1629669 GTCTCTTAAA
* * *
1629679 TATGACAAACATGAATACTCATACTAATCCCCGTTCTTTTCAAGATTAGACACCATAAACATAGT
1 TATGACAAACAAGAATACTCATAATAATCACCGTTCTTTTCAAGATTAGACACCATAAACATAGT
* * * ** *
1629744 CTTCTCATTTGAATAGATCATAATGATGCTTTGGTTTTGCAAGAAAGGCTTTTTTCCAACCAATT
66 CTTCTCATTAGAATACATCATAATGATGCTTTAGTTTCACAAGAAAGGCTTTCTTCCAACCAATT
* * * * *
1629809 TTTGTAAAGTCTAAGTTCGTGCCTCAAAAGAGACAAACATGGATTCTAGTAAAGATCTTCGTTCA
131 TTTATAAAGTCTAAATTCGCGCCTCAAAAGAGACAAACATGGAATCTAGTAAAGATCTTCATTCA
* ** * *
1629874 TTTTGTGATTAGGTGCTATAAACACATTCTGCTCGTTAGGATAAATGATATTGATGATTTTCTTT
196 TTTAGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTT
* * * * *
1629939 TGCATGAAAATCTTTTCTTTATCTTATTTTTCTTAAAATCAAAGTTGATCCTTTAAATAAGGCAA
261 TACATGAAAATCTTTTCTTTACCTTATTTTCCTTAAAATCAAAGTTCAACCTTTAAATAAGGCAA
**
1630004 GCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGAGAAGCAAAAACACATTTTCTTCAT
326 GCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGAGAAGCAAAAACACATTCCCTTCAT
*
1630069 TAGAATGCATGACACTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAT
391 TAGAATACATGACACTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAT
* * * * ***
1630122 TATGACACACAAGAATACTGATAATAATCACCGTTTTTTTCGAGATTAGGTGCCATAAACATAGT
1 TATGACAAACAAGAATACTCATAATAATCACCGTTCTTTTCAAGATTAGACACCATAAACATAGT
* * * **
1630187 CTTCTTATTAGGATACA-CGAT-TTGATGCTTTAGTTTCACAAGAAAGGCTTTCTTCCCCCCAAT
66 CTTCTCATTAGAATACATC-ATAATGATGCTTTAGTTTCACAAGAAAGGCTTTCTTCCAACCAAT
* * *
1630250 TTTTATAAAGTCTAAATTCGCGCCTCAAATGAGACAAACATGGAATCTAGTAATGATCTTTATTC
130 TTTTATAAAGTCTAAATTCGCGCCTCAAAAGAGACAAACATGGAATCTAGTAAAGATCTTCATTC
* *
1630315 ATTTAGTGATTCGGCACTATAAACACATTCTCCTTATTAGGATAAATGATATTGATGATTTTCTT
195 ATTTAGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTT
* *
1630380 TTACAATGAAAATCTTTTC-TTAGCCTTATTTTCCTTAAAATCAAAGTTCAACTTTTAAATATGG
260 TTAC-ATGAAAATCTTTTCTTTA-CCTTATTTTCCTTAAAATCAAAGTTCAACCTTTAAATAAGG
* * * * *
1630444 CAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTTAGGATTGGGAAGCAAAAACACATTCCCTT
323 CAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGAGAAGCAAAAACACATTCCCTT
* * *
1630509 CATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTT
388 CATTAGAATACATGACACTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT
1630561 TCCACCATTT
Statistics
Matches: 382, Mismatches: 54, Indels: 6
0.86 0.12 0.01
Matches are distributed among these distances:
442 157 0.41
443 225 0.59
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (443 bp):
TATGACAAACAAGAATACTCATAATAATCACCGTTCTTTTCAAGATTAGACACCATAAACATAGT
CTTCTCATTAGAATACATCATAATGATGCTTTAGTTTCACAAGAAAGGCTTTCTTCCAACCAATT
TTTATAAAGTCTAAATTCGCGCCTCAAAAGAGACAAACATGGAATCTAGTAAAGATCTTCATTCA
TTTAGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTT
TACATGAAAATCTTTTCTTTACCTTATTTTCCTTAAAATCAAAGTTCAACCTTTAAATAAGGCAA
GCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGAGAAGCAAAAACACATTCCCTTCAT
TAGAATACATGACACTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAT
Found at i:1631773 original size:395 final size:396
Alignment explanation
Indices: 1631011--1631797 Score: 1089
Period size: 395 Copynumber: 2.0 Consensus size: 396
1631001 AAATTGATGC
* *
1631011 TTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAAAATCAAAGTTTATCTCTTAAA
1 TTTGGCGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTGGATAAAATCAAAGTTTATCTCTTAAA
* * *
1631076 AACGACAAACATGAATACTCATGCTAATCCTCTTTCTTTTCAGGATTAGGCACCACAAACACAGT
66 AACGACAAACATGAATACTCATACTAATCCTCTTTCTTTTCAAGATTAGACACCACAAACACAGT
* * * * * *
1631141 CTTCTCATTAGGATACATCCTATTCACGCTTTGGTTTCGTAGGAAAGGCTTCTTTCCTACCAATT
131 CTTCTCATTAGAATACATCATAATCACGCTTTGGTTTCGCAAGAAAGGCTTCTTTCCCACCAATT
* *
1631206 TTTGTAAAGTCTAAGTTCGTGACCCAAATGAGACAAACATGGATTCTAGTAATGATATTCACTCT
196 TTTGTAAAGTCTAAGTTCGTGACCCAAATGAGAAAAACATGGATTCTAGTAAAGATATTCACTCT
* * *
1631271 TTTGGTCATTAGACACTATAAGCATATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTTT
261 TTTGGTCATTAGACACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTATTT
* * *
1631336 TGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTACAATCAAAGTTCATCCTTTAAATAAGGCAA
326 TGCATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTAATCCTTTAAATAAGGCAA
1631401 GCCACG
391 GCCACG
* * * *
1631407 TTTGGCGTTGCAAGAAAAGCTTTT-TTTGCACCGTTTTGGATAGAATCAAAGTTTGTCTCTTAAA
1 TTTGGCGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTGGATAAAATCAAAGTTTATCTCTTAAA
* * * *
1631471 TATGACAAACATGAATACTCATACTAATCC-CTGTTCTTTTCAAGATTAGACACCATAAACATAG
66 AACGACAAACATGAATACTCATACTAATCCTCT-TTCTTTTCAAGATTAGACACCACAAACACAG
* * * * *
1631535 TCTTCTCATTTGAATAGATCATAATGATGCTTTGGTTTTGCAAGAAAGGCATT-TTTCCCACCAA
130 TCTTCTCATTAGAATACATCATAATCACGCTTTGGTTTCGCAAGAAAGGC-TTCTTTCCCACCAA
* * * **
1631599 TTTTTGTAAAGTCTAAGTTCGTG-CTTCAAATGTGAAAAACATGGATTCTAGTAAAGATCTTCGT
194 TTTTTGTAAAGTCTAAGTTCGTGAC-CCAAATGAGAAAAACATGGATTCTAGTAAAGATATTCAC
* ** * * *
1631663 TCATTTT-GTGATTAGGTACTATAAACACATTTTGCTCATTAGGATAAATGATATTGATGATTTT
258 TC-TTTTGGTCATTAGACACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTT
* * *
1631727 ATTTTGCATGAAAATCTTTTCTTTACCTTATTTTTCTTAAAATCAAAGTTAATGCTTTAAATAAG
322 ATTTTGCATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTAATCCTTTAAATAAG
1631792 GCAAGC
387 GCAAGC
1631798 ATCAATTCTC
Statistics
Matches: 341, Mismatches: 46, Indels: 9
0.86 0.12 0.02
Matches are distributed among these distances:
394 3 0.01
395 310 0.91
396 28 0.08
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (396 bp):
TTTGGCGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTGGATAAAATCAAAGTTTATCTCTTAAA
AACGACAAACATGAATACTCATACTAATCCTCTTTCTTTTCAAGATTAGACACCACAAACACAGT
CTTCTCATTAGAATACATCATAATCACGCTTTGGTTTCGCAAGAAAGGCTTCTTTCCCACCAATT
TTTGTAAAGTCTAAGTTCGTGACCCAAATGAGAAAAACATGGATTCTAGTAAAGATATTCACTCT
TTTGGTCATTAGACACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTATTT
TGCATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTAATCCTTTAAATAAGGCAA
GCCACG
Found at i:1633291 original size:954 final size:944
Alignment explanation
Indices: 1631418--1636506 Score: 4503
Period size: 954 Copynumber: 5.4 Consensus size: 944
1631408 TTGGCGTTGC
* * *
1631418 AAGAAAAGCTTTT-TTTGCACCGTTTTGGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACA
1 AAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACA
* * * *
1631482 TGAATACTCATACTAATCCCTGTTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTCATTTG
66 AGAATACTCATACTAATCCCCGTTCTTTTCAGGATTAGACACCATAAACATAGTCTTCTCATTAG
* * * * *
1631547 AATAGATCATAATGATGCTTTGGTTTTGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTC
131 GATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTC
* * * * *
1631612 TAAGTTCGTGCTTCAAATGTGAAAAACATGGATTCTAGTAAAGATCTTCGTTCATTTTGTGATTA
196 TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTA
* * *
1631677 GGTACTATAAACACATTTTGCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGAAAAT
261 GGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGAAAAT
* * * *
1631742 CTTTTCTTTACCTTATTTTTCTTAAAATCAAAGTTAATGCTTTAAATAAGGCAAGCATCAATTCT
326 CTTTTCTTTACCTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCATCGATTCT
* *
1631807 CATAATAGTCTCCATT-CTTTTCAAGATTGAGAAGCAAAAACACATTCCCTTCATTAGGATGCAT
391 CATAATAGTCTCCATTCCTTTT-AAGATTGGGAAGCAAAAACACATTCCCTTCATTAGGATACAT
* * *
1631871 GATATTGATGCTTTGGTGTCGTAAGAAATGCTTTTCTTTCCATCGTTTGTGACAGAATCAAAGTT
455 GAAATTGATGCTTTGGTGTCGTAAGAAA-GCTTTTCTTTCCACCGTTT-TGATAGAATCAAAGTT
* * * * * *
1631936 TGTCTCTTAAATACGACACACAAGAATACTGATAATAATCCCC-TTTTTTTCAGGATTAGGTACC
518 TGTCTCTTAAATACGACAAACATGAATACTCATACTAATCCCCGTTCTTTTCAGGATTAGGCACC
* *
1632000 ATAAACATAGTCTTCTTATTAGGATACA-CGAT-TTGATGCTTTAGTTTCGCAAGAAAGGCTTTC
583 A-CAA-ATAGTCTTCTTATTAGGATACATC-ATATTGATGCTTTGGTTTCGCAAGAAAGGCTTT-
* * * * * *
1632063 TTCCCCCCAATGTTTATAAAGTCTAAATTCGTGTCTCAAATGAGACAAACATGGATTCTAGTAAT
644 TTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAA
* * *
1632128 GATCTTTATTCATTTAGTGATTTGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTG
709 GATC-TTATTCATTTTGTGATTAGGAACTATAAACACATTCTCCTC-TTAGGATAAATGATATTG
* * * *
1632193 ATGATTTTCTTTTACAATGGAAATCTTTTC-TTAGCCTTATTCTCCTTAAAATCAAAGTTCATCT
772 ATGATTTTCTTTTGC-ATGGAAATCTTTTCTTTA-TCTTATTTTCCTTAAAATCAAAGTTCATCC
* * * * *
1632257 TTTAAATATGGCAATCATCGATTCTCGTAATAGTCTCTATTCTTTTTAAGATTGGGAAGCAAAAA
835 TTTAAATAAGGCAAGCATCGATTCTCATAATAGTCTCCATTC-TTTTAAGATTGAGAAGCAAAAA
1632322 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGT
899 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGT
*
1632368 AAGAAAAGCTTTTCTTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAAC
1 AAGAAAAGCTTTTC-TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAAC
* * * *
1632433 AAGAATACTCATACTAATCCCCGTTCTTTTTAGGATTAGACAGCGTAAACATAGTCTTCTTATTA
65 AAGAATACTCATACTAATCCCCGTTCTTTTCAGGATTAGACACCATAAACATAGTCTTCTCATTA
*
1632498 GGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTTTCACACCAATTTTTGTAAA
130 GGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGC--TTTTTTCCCACCAATTTTTGTAAA
* ** * * * * ** *
1632563 GTCTAAGTTCATGCCTGTAATGAGATACATATAGATTCTAGTAAAT-ATCTTTTTTCATTTTTTG
193 GTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGT-AATGATCTTCATTCATTTTGTG
* * * *
1632627 AATAGGTACAATAAACA-ATTCTCCTC-TTCGGGATAAATGATATTGATGATTTTATTTTGCATG
257 ATTAGGCACTATAAACACATTCTCCTCATT-AGGATAAATGATATTGATGATTTTATTTTGCATG
* * * ** *
1632690 GAAATCTTTTCTTTACGTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAACAAACCAAGCTTCG
321 AAAATCTTTTCTTTACCTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCATCG
* * * * * * *
1632755 ATTCTCATAATAGCCCCCATTCCTTTTAAGATTGGGAATCGAACACATATTCCCTTTATTAGGAT
386 ATTCTCATAATAGTCTCCATTCCTTTTAAGATTGGGAAGCAAAAACACATTCCCTTCATTAGGAT
* * *
1632820 ACACGAAATTGATGCTTTGGTGTCATAAGAGAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAA
451 ACATGAAATTGATGCTTTGGTGTCGTAAGA-AAGCTTTTCTTTCCACCGTTTT-GATAGAATCAA
* *
1632885 AGTTTGTCTCTCAAATACAACAAACATGAATACTCATACTAATCCCCGTTCTTTTCAGGATTAGG
514 AGTTTGTCTCTTAAATACGACAAACATGAATACTCATACTAATCCCCGTTCTTTTCAGGATTAGG
* *
1632950 CACCACAAATGTAGTCTTCTCATTAGGATACATCATAATGATGCTTTGG-TTCTGCAAGAAAGGC
579 CACCACAAA--TAGTCTTCTTATTAGGATACATCATATTGATGCTTTGGTTTC-GCAAGAAAGGC
*
1633014 ATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATTGATTCTAG
641 -TTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAG
* ** * *
1633079 TAAAGATCTTCGTTCATTTTGTGATTAGGTGCTATAAACACAATCTACTCGTTAGGATAAATGAT
705 TAAAGATCTT-ATTCATTTTGTGATTAGGAACTATAAACACATTCTCCTC-TTAGGATAAATGAT
* * * *
1633144 ATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTATCTTATTTTTCATAAAATCAAAGTTGAT
768 ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTATCTTATTTTCCTTAAAATCAAAGTTCAT
*
1633209 CCTTTAAATAAGGCAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGAGAAGCAAA
833 CCTTTAAATAAGGCAAGCATCGATTCTCATAATAGTCTCCATTCTTTT-AAGATTGAGAAGCAAA
* *
1633274 AACACATTCCCTTCATTAGGATGCATGACACTGATGCTTTGGTGTCGT
897 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGT
* * * *
1633322 AAGAAAAGCTTTTCTTTCCATCGTTTGTGACAGAATCAAAGTTTGTCTCTTAAATACGACACACA
1 AAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACA
* * ** * *** *
1633387 AGAATACTGATAATAATCACCTTTTTTTTTC-GAGATTAGGTGCCATAAACATAGTCTTCTTATT
66 AGAATACTCATACTAATC-CCCGTTCTTTTCAG-GATTAGACACCATAAACATAGTCTTCTCATT
* * * * *
1633451 AGGATAGA-CGAT-TTGATGCTTTAGTTTCGCAAGAAAGGCTTTCTTCCCCCCAATTTTTATAAA
129 AGGATACATC-ATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAA
* * * *
1633514 GTCTAAATTCGCGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTAGTGA
193 GTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGA
* * *
1633579 TTTGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAATGG
258 TTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGC-ATGA
* * *
1633644 AAATCTTTTC-TTAGCCTTATTTTCCTTAAAATCAAAGTTCAACTTTTAAATATGGCAAGCATCG
322 AAATCTTTTCTTTA-CCTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCATCG
* * *
1633708 ATTCTCGTAATAGTCTCCATTCTTTTTAGGATTGGGAAGCAAAAACACATTCCCTTCATTAGGAT
386 ATTCTCATAATAGTCTCCATTCCTTTTAAGATTGGGAAGCAAAAACACATTCCCTTCATTAGGAT
* *
1633773 ACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTTCCACCATTTTTGATAGAATCA
451 ACATGAAATTGATGCTTTGGTGTCGTAAG-AAAGCTTTTC-TTTCCACC-GTTTTGATAGAATCA
* *
1633838 AAGTTTGTCTCTTAAATATGACAAACATGAATACTCATACTAATCCCCGTTCTTTTTAGGATTAG
513 AAGTTTGTCTCTTAAATACGACAAACATGAATACTCATACTAATCCCCGTTCTTTTCAGGATTAG
* ** *
1633903 ACAGCGTCAACATAGTCTTCTTATTTGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGC
578 GCA-CCACAA-ATAGTCTTCTTATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGC
* * * * * *
1633968 TTTTTTTTCACACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCTACTGAGATACATATGGATTCT
641 ---TTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCT
* * ** * *
1634033 AGTAAAGATCTGTTTTCATTTTTTGAACAGGAACTGTAAACA-ATTCTCCTCTTCATGATAAATG
703 AGTAAAGATCT-TATTCATTTTGTGATTAGGAACTATAAACACATTCTCCTCTT-AGGATAAATG
* * *
1634097 ATATTGCTGATTTTATTTTGCATGGAAATCTTTTCTTTATGTTATTTTCCTTAAAATCAAAGTTC
766 ATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTATCTTATTTTCCTTAAAATCAAAGTTC
* ** * * * *
1634162 ATCCTTTAAACAAACCAAGCTTCGATTCTCATAATAGCCACCATTCCTTTTAAGATT-AGGAATC
831 ATCCTTTAAATAAGGCAAGCATCGATTCTCATAATAGTCTCCATT-CTTTTAAGATTGA-GAAGC
* * * ** *
1634226 GAACACACATTCACTTTTTTAGGATACATGAAATTGATGCTTTGGTGTCGT
894 AAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGT
* * * *
1634277 AAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTATCTCTTAAAAACGACAAACA
1 AAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACA
* * * * * * *
1634342 TGAATACTCAAACTAATCCCCATTCTTTTCAGGATTAGGCACCAT-AACGTAGTGTCCTCATTAG
66 AGAATACTCATACTAATCCCCGTTCTTTTCAGGATTAGACACCATAAACATAGTCTTCTCATTAG
* * * *
1634406 TATACATCATATTGACGCTTTGGTTTCGCATGAAAGGCTTTTTTCCTACCAATTTTTGTAAAGTC
131 GATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTC
* * * *
1634471 TAAGTTCGTGACTCAAATGAGACAAACATGGATTCTAGTAATGATATTCACTC-TTTTGGTCATT
196 TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTT-GTGATT
* * *
1634535 AGACACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAA
260 AGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGAAAA
* * *
1634600 TCTTTTCTTTGCCTTATTTTCCTTACAATCAAAGTTCATCCTTTAAATAAGGCAAGCCA-CGTTT
325 TCTTTTCTTTACCTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAG-CATCGATT
* * * * * ** * ** **
1634664 GGGGTTGCAAGAAAAG-CT---TT--TTTTGCACCGTTTTTGATAG-AATCAA-AGTTTGTC-TC
389 ----CT-C-ATAATAGTCTCCATTCCTTTT--A-AGATTGGGA-AGCAA-AAACACATTCCCTTC
* ** ** ** * ** ** * * * * *
1634720 -TTA--A-ATATGACAA-ACATG-AAT--ACTCATACTAATCCCTGTTCTTTTCA-AGATTAGAC
443 ATTAGGATACATGA-AATTGATGCTTTGGTGTCGTAAGAA-AGCTTTTCTTTCCACCGTTTTG--
* * * * * * * ** *
1634776 ACCATAAACATAGTCTTGTCAT-TTGAATA-GATCATA-ATG-ATGCT--T--TGGT----TTTG
504 A-TAGAATCAAAGT-TTGTC-TCTTAAATACGA-CAAACATGAATACTCATACTAATCCCCGTT-
***** *** * * * * * * *
1634829 CAAGAAAGGCATTTTTC-CCACCAAT--TTTTGTAAAGTCTAAGTTCG-TGCCTCA-AATGA-GA
564 CTTTTCAGG-ATTAGGCACCACAAATAGTCTTCT-TA-T-T-AG---GATACATCATATTGATG-
** * * * * * *** *
1634888 CAAACATAGATT--CTAGTAAA-G-ATCTT-CGTTC-A-TTTTGT-GA-T-T-AG---GTG-CT-
620 C---TTTGGTTTCGCAAG-AAAGGCTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTC
* ** * * * * *
1634937 ATAA--ACACATTC-T-G-CTCGTTAGGATAAATGATATTGA-TGATTTTCT--TT-TG--C-AT
681 A-AATGAGACAAACATGGATTC--TA-G-TAAA-GATCTT-ATTCATTTTGTGATTAGGAACTAT
* ** *** *** * * ** * * * ** ** **
1634990 GAAA-ATCTTTTCTTTATCTTATTTTTCTTAAAATCAAAG-TTGATCCTTTAAAT--AAGGC-AA
739 -AAACA-C-ATTC-TCCTCTTAGGATAAATGATATTGATGATT-TTCTTTTGCATGGAAATCTTT
* * * * ** * * **
1635050 GC---ATC-GA--TT-CTCATAA-C--AGTCTCCATTGTTTTCAAGAT-TGAG-AAGCA--AAAA
799 TCTTTATCTTATTTTCCTTAAAATCAAAGT-T-CA-TCCTTT-AA-ATAAG-GCAAGCATCGATT
* * *** * * * **
1635101 CACAT--T--TCCTTCA-T-TAGGATGCA-TCA----------CACATTCACTTTTTTAGGATAC
858 CTCATAATAGT-CTCCATTCTTTTAAG-ATTGAGAAGCAAAAACACATTCCCTTCATTAGGATAC
*
1635149 ATGAAATTGATGCTTTGGTGTCGT
921 ATGACATTGATGCTTTGGTGTCGT
* * * *
1635173 AAGAAAAGCTTTTCTTTCCATCGTTTGTGACAGAATCAAAGTTTGTCTCTTAAATACGACACACA
1 AAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACA
* * * * * *** * *
1635238 AGAATACTGATAATAATCACCTTTTTTTTC-GAGATTAGGTGCCATAAACATAGTCTTATTATTA
66 AGAATACTCATACTAATCCCCGTTCTTTTCAG-GATTAGACACCATAAACATAGTCTTCTCATTA
* * * * *
1635302 GGATACA-CGAT-TTGATGCTTTAGTTTCGCAAGAAAGGCATTCTTCCCCCCAATTTTTATAAAG
130 GGATACATC-ATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAG
* ** *
1635365 TCTAAATTCGCT-CCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTTTTCATTTAGTGA
194 TCTAAGTTCG-TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGA
* * * *
1635429 TTTGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTACAATGG
258 TTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGC-ATGA
* * * *
1635494 AAATCTTTTC-TTAGCCTTATTTTCCGTAAAATCAAAGTTCAACTTTTAAATATGGCAAGCATCG
322 AAATCTTTTCTTTA-CCTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCATCG
* * *
1635558 ATTCTCGTAATAGTCTCCATTCTTTTTAGGATTGGGAAGCAAAAACACATTCCCTTCATTAGGAT
386 ATTCTCATAATAGTCTCCATTCCTTTTAAGATTGGGAAGCAAAAACACATTCCCTTCATTAGGAT
* *
1635623 ACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTTCCACCATTTTTGATAGAATCA
451 ACATGAAATTGATGCTTTGGTGTCGTAAG-AAAGCTTTTC-TTTCCACC-GTTTTGATAGAATCA
*
1635688 AAGTTTGTCTCTTAAATACGACAAACATGAATACTCATACTAATCCCCGTTCTTTTTAGGATTAG
513 AAGTTTGTCTCTTAAATACGACAAACATGAATACTCATACTAATCCCCGTTCTTTTCAGGATTAG
* ** * *
1635753 ACAGCGTCAACATAGTCTTCTTATTAGGATACATCGTATTGATGCTTTGGTGTCGCAAGAAAGGC
578 GCA-CCACAA-ATAGTCTTCTTATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGC
* * * * * *
1635818 TTTTTTTCACACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCTACTGAGATACATATGGATTCTA
641 --TTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTA
* * ** * * * *
1635883 GTAAAGATCTGTTTTCATTTTTTGAACAGGTACTGTAAATA-GTTCTCCTCTTCAGGATAAATGA
704 GTAAAGATCT-TATTCATTTTGTGATTAGGAACTATAAACACATTCTCCTCTT-AGGATAAATGA
* * * * *
1635947 TATTCAGGATTTTATTTTGCATGGAAATCTTTTCTTTATGTTATTTTCCTTAAAATCAAAGTTCT
767 TATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTATCTTATTTTCCTTAAAATCAAAGTTCA
* ** * * * * *
1636012 TCCTTTAAACAAACCAAGCTTCGATTCTCATAATAGCCACCATTCCTTTTAAGATT-AGGAATCG
832 TCCTTTAAATAAGGCAAGCATCGATTCTCATAATAGTCTCCATT-CTTTTAAGATTGA-GAAGCA
* * ** *
1636076 AACACACATTCACTTTTTTAGGATACATGAAATTGATGCTTTGGTGTCGT
895 AAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGT
* * *
1636126 AAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTATCTCTTACAA-ACGACAAAC
1 AAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTA-AATACGACAAAC
* * ** * * * **
1636190 ATGAATACTCATGCTAATCTTCATTCTTTTCAGGATTAGGCACCACAAACGCAGTCTTCTCATTA
65 AAGAATACTCATACTAATCCCCGTTCTTTTCAGGATTAGACACCATAAACATAGTCTTCTCATTA
* * *
1636255 AGATACATCATATTGATGCTTTGGTTTCGCAGGAAAGGCTTTTTTCCTACCAATTTTTGTAAAGT
130 GGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGT
* * * *
1636320 CTAAGTTCGTGACTCAAATGAGACAAACATGGATTCTAGTAATGATATTCACTC-TTTTGGTCAT
195 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTT-GTGAT
* * *
1636384 TAGACACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTTTTGCATGAAA
259 TAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGAAA
* * *
1636449 ATCTTTTCTTTGCCCTATTTTCCTTACAATCAAAGTTCATCCTTTAAATAAGGCAAGC
324 ATCTTTTCTTTACCTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGC
1636507 CACGTTTGGG
Statistics
Matches: 3276, Mismatches: 637, Indels: 449
0.75 0.15 0.10
Matches are distributed among these distances:
891 4 0.00
892 3 0.00
893 5 0.00
894 11 0.00
895 6 0.00
896 295 0.09
897 86 0.03
898 2 0.00
899 8 0.00
900 2 0.00
901 14 0.00
902 22 0.01
903 12 0.00
905 4 0.00
906 7 0.00
907 8 0.00
908 9 0.00
909 12 0.00
910 11 0.00
911 10 0.00
912 12 0.00
913 11 0.00
914 18 0.01
915 2 0.00
916 2 0.00
917 3 0.00
918 2 0.00
920 3 0.00
921 10 0.00
922 11 0.00
923 31 0.01
924 12 0.00
925 12 0.00
926 31 0.01
927 11 0.00
928 10 0.00
929 3 0.00
931 2 0.00
932 3 0.00
933 2 0.00
934 2 0.00
935 14 0.00
936 14 0.00
937 9 0.00
938 7 0.00
939 10 0.00
940 9 0.00
941 10 0.00
942 11 0.00
943 10 0.00
944 4 0.00
945 4 0.00
947 12 0.00
948 22 0.01
949 14 0.00
950 18 0.01
951 89 0.03
952 185 0.06
953 783 0.24
954 800 0.24
955 406 0.12
956 108 0.03
957 6 0.00
958 3 0.00
959 4 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (944 bp):
AAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACA
AGAATACTCATACTAATCCCCGTTCTTTTCAGGATTAGACACCATAAACATAGTCTTCTCATTAG
GATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTC
TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTA
GGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGAAAAT
CTTTTCTTTACCTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCATCGATTCT
CATAATAGTCTCCATTCCTTTTAAGATTGGGAAGCAAAAACACATTCCCTTCATTAGGATACATG
AAATTGATGCTTTGGTGTCGTAAGAAAGCTTTTCTTTCCACCGTTTTGATAGAATCAAAGTTTGT
CTCTTAAATACGACAAACATGAATACTCATACTAATCCCCGTTCTTTTCAGGATTAGGCACCACA
AATAGTCTTCTTATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTCCCAC
CAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTA
TTCATTTTGTGATTAGGAACTATAAACACATTCTCCTCTTAGGATAAATGATATTGATGATTTTC
TTTTGCATGGAAATCTTTTCTTTATCTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGG
CAAGCATCGATTCTCATAATAGTCTCCATTCTTTTAAGATTGAGAAGCAAAAACACATTCCCTTC
ATTAGGATACATGACATTGATGCTTTGGTGTCGT
Found at i:1633311 original size:476 final size:474
Alignment explanation
Indices: 1631418--1634656 Score: 4183
Period size: 476 Copynumber: 6.8 Consensus size: 474
1631408 TTGGCGTTGC
* *
1631418 AAGAAAAGCTTTT-TTTGCACCGTTTTGGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACA
1 AAGAAAAGCTTTTCTTTCCACCGTTTT-GATAGAATCAAAGTTTGTCTCTTAAATACGACAAACA
* * * * *
1631482 TGAATACTCATACTAATCCCTGTTCTTTTCAAGATTAGACACCATAAACATAGTCTTCTCATTTG
65 TGAATACTCATACTAATCCCCGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTATTAG
* * * * *
1631547 AATAGATCATAATGATGCTTTGGTTTTGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTC
130 GATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTC
* * * *
1631612 TAAGTTCGTGCTTCAAATGTGAAAAACATGGATTCTAGTAAAGATCTTCGTTCATTTTGTGATTA
195 TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGATTA
* * * * *
1631677 GGTACTATAAACACATTTTGCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGAAAAT
260 GGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAAT
* * * *
1631742 CTTTTCTTTACCTTATTTTTCTTAAAATCAAAGTTAATGCTTTAAATAAGGCAAGCATCAATTCT
325 CTTTTCTTTACCTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCATCGATTCT
*
1631807 CATAATAGTCTCCATTCTTTTCAAGATTGAGAAGCAAAAACACATTCCCTTCATTAGGATGCATG
390 CATAATAGTCTCCATTCTTTT-AAGATTGAGAAGCAAAAACACATTCCCTTCATTAGGATACATG
*
1631872 ATATTGATGCTTTGGTGTCGT
454 ACATTGATGCTTTGGTGTCGT
* * * *
1631893 AAGAAATGCTTTTCTTTCCATCGTTTGTGACAGAATCAAAGTTTGTCTCTTAAATACGACACACA
1 AAGAAAAGCTTTTCTTTCCACCGTTT-TGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACA
* * * * *
1631958 AGAATACTGATAATAATCCCC-TTTTTTTCAGGATTAGGTACCATAAACATAGTCTTCTTATTAG
65 TGAATACTCATACTAATCCCCGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTATTAG
* * * * *
1632022 GATACA-CGAT-TTGATGCTTTAGTTTCGCAAGAAAGGCTTTCTTCCCCCCAATGTTTATAAAGT
130 GATACATC-ATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGT
* * * * *
1632085 CTAAATTCGTGTCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTAGTGATT
194 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGATT
* *
1632150 TGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTACAATGGAA
259 AGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGC-ATGGAA
* * * *
1632215 ATCTTTTC-TTAGCCTTATTCTCCTTAAAATCAAAGTTCATCTTTTAAATATGGCAATCATCGAT
323 ATCTTTTCTTTA-CCTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCATCGAT
* * *
1632279 TCTCGTAATAGTCTCTATTCTTTTTAAGATTGGGAAGCAAAAACACATTCCCTTCATTAGGATAC
387 TCTCATAATAGTCTCCATTC-TTTTAAGATTGAGAAGCAAAAACACATTCCCTTCATTAGGATAC
1632344 ATGACATTGATGCTTTGGTGTCGT
451 ATGACATTGATGCTTTGGTGTCGT
*
1632368 AAGAAAAGCTTTTCTTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAAC
1 AAGAAAAGCTTTTC-TTTCCACC-GTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAAC
* * * * *
1632433 AAGAATACTCATACTAATCCCCGTTCTTTTTAGGATTAGACAGCGTAAACATAGTCTTCTTATTA
64 ATGAATACTCATACTAATCCCCGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTATTA
*
1632498 GGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTTTCACACCAATTTTTGTAAA
129 GGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGC--TTTTTTCCCACCAATTTTTGTAAA
* ** * * * * * ** *
1632563 GTCTAAGTTCATGCCTGTAATGAGATACATATAGATTCTAGTAAATATCTTTTTTCATTTTTTGA
192 GTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGA
* * * * *
1632628 ATAGGTACAATAAACA-ATTCTCCTC-TTCGGGATAAATGATATTGATGATTTTATTTTGCATGG
257 TTAGGCACTATAAACACATTCTCCTCATT-AGGATAAATGATATTGATGATTTTCTTTTGCATGG
* * ** *
1632691 AAATCTTTTCTTTACGTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAACAAACCAAGCTTCGA
321 AAATCTTTTCTTTACCTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCATCGA
* * * * * * * *
1632756 TTCTCATAATAGCCCCCATTCCTTTTAAGATTGGGAATCGAACACATATTCCCTTTATTAGGATA
386 TTCTCATAATAGTCTCCATT-CTTTTAAGATTGAGAAGCAAAAACACATTCCCTTCATTAGGATA
* * *
1632821 CACGAAATTGATGCTTTGGTGTCAT
450 CATGACATTGATGCTTTGGTGTCGT
* * * *
1632846 AAGAGAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTGTCTCTCAAATACAACAAACA
1 AAGAAAAGCTTTTCTTTCCACCGTTTT-GATAGAATCAAAGTTTGTCTCTTAAATACGACAAACA
* ** *
1632911 TGAATACTCATACTAATCCCCGTTCTTTTCAGGATTAGGCACCACAAATGTAGTCTTCTCATTAG
65 TGAATACTCATACTAATCCCCGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTATTAG
* *
1632976 GATACATCATAATGATGCTTTGG-TTCTGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGT
130 GATACATCATATTGATGCTTTGGTTTC-GCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGT
* *
1633040 CTAAGTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAAAGATCTTCGTTCATTTTGTGATT
194 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGATT
** * * * *
1633105 AGGTGCTATAAACACAATCTACTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAA
259 AGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAA
* * * *
1633170 TCTTTTCTTTATCTTATTTTTCATAAAATCAAAGTTGATCCTTTAAATAAGGCAAGCATCGATTC
324 TCTTTTCTTTACCTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCATCGATTC
* *
1633235 TCATAACAGTCTCCATTCTTTTCAAGATTGAGAAGCAAAAACACATTCCCTTCATTAGGATGCAT
389 TCATAATAGTCTCCATTCTTTT-AAGATTGAGAAGCAAAAACACATTCCCTTCATTAGGATACAT
*
1633300 GACACTGATGCTTTGGTGTCGT
453 GACATTGATGCTTTGGTGTCGT
* * *
1633322 AAGAAAAGCTTTTCTTTCCATCGTTTGTGACAGAATCAAAGTTTGTCTCTTAAATACGACACACA
1 AAGAAAAGCTTTTCTTTCCACCGTTT-TGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACA
* * * ** * **
1633387 AGAATACTGATAATAATCACCTTTTTTTTTC-GAGATTAGGTGCCATAAACATAGTCTTCTTATT
65 TGAATACTCATACTAATC-CCCGTTCTTTTCAG-GATTAGGCACCATAAACATAGTCTTCTTATT
* * * * *
1633451 AGGATAGA-CGAT-TTGATGCTTTAGTTTCGCAAGAAAGGCTTTCTTCCCCCCAATTTTTATAAA
128 AGGATACATC-ATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAA
* * * * *
1633514 GTCTAAATTCGCGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTAGTGA
192 GTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGA
*
1633579 TTTGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAATGG
257 TTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGC-ATGG
* * *
1633644 AAATCTTTTC-TTAGCCTTATTTTCCTTAAAATCAAAGTTCAACTTTTAAATATGGCAAGCATCG
321 AAATCTTTTCTTTA-CCTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCATCG
* * *
1633708 ATTCTCGTAATAGTCTCCATTCTTTTTAGGATTGGGAAGCAAAAACACATTCCCTTCATTAGGAT
385 ATTCTCATAATAGTCTCCATTC-TTTTAAGATTGAGAAGCAAAAACACATTCCCTTCATTAGGAT
1633773 ACATGACATTGATGCTTTGGTGTCGT
449 ACATGACATTGATGCTTTGGTGTCGT
* *
1633799 AAGAAAAGCTTTTCTTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAAC
1 AAGAAAAGCTTTTC-TTTCCACC-GTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAAC
* * * * * *
1633864 ATGAATACTCATACTAATCCCCGTTCTTTTTAGGATTAGACAGCGTCAACATAGTCTTCTTATTT
64 ATGAATACTCATACTAATCCCCGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTATTA
*
1633929 GGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTTTCACACCAATTTTTGTAAA
129 GGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGC--TTTTTTCCCACCAATTTTTGTAAA
* * * * * * *
1633994 GTCTAAGTTCGTGCCTCTACTGAGATACATATGGATTCTAGTAAAGATCTGT-TTTCATTTTTTG
192 GTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCT-TCATTCATTTTGTG
** * * * * *
1634058 AACAGGAACTGTAAACA-ATTCTCCTC-TTCATGATAAATGATATTGCTGATTTTATTTTGCATG
256 ATTAGGCACTATAAACACATTCTCCTCATT-AGGATAAATGATATTGATGATTTTCTTTTGCATG
** * ** *
1634121 GAAATCTTTTCTTTATGTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAACAAACCAAGCTTCG
320 GAAATCTTTTCTTTACCTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCATCG
* * * * * * **
1634186 ATTCTCATAATAGCCACCATTCCTTTTAAGATT-AGGAATCGAACACACATTCACTTTTTTAGGA
385 ATTCTCATAATAGTCTCCATT-CTTTTAAGATTGA-GAAGCAAAAACACATTCCCTTCATTAGGA
*
1634250 TACATGAAATTGATGCTTTGGTGTCGT
448 TACATGACATTGATGCTTTGGTGTCGT
* * *
1634277 AAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTATCTCTTAAAAACGACAAACA
1 AAGAAAAGCTTTTCTTTCCACCGTTTT-GATAGAATCAAAGTTTGTCTCTTAAATACGACAAACA
* * * * * *
1634342 TGAATACTCAAACTAATCCCCATTCTTTTCAGGATTAGGCACCAT-AACGTAGTGTCCTCATTAG
65 TGAATACTCATACTAATCCCCGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTATTAG
* * * *
1634406 TATACATCATATTGACGCTTTGGTTTCGCATGAAAGGCTTTTTTCCTACCAATTTTTGTAAAGTC
130 GATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTC
* * * * *
1634471 TAAGTTCGTGACTCAAATGAGACAAACATGGATTCTAGTAATGATATTCACTC-TTTTGGTCATT
195 TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTT-GTGATT
* * *
1634535 AGACACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAA
259 AGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAA
* *
1634600 TCTTTTCTTTGCCTTATTTTCCTTACAATCAAAGTTCATCCTTTAAATAAGGCAAGC
324 TCTTTTCTTTACCTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGC
1634657 CACGTTTGGG
Statistics
Matches: 2375, Mismatches: 343, Indels: 92
0.85 0.12 0.03
Matches are distributed among these distances:
473 5 0.00
474 236 0.10
475 391 0.16
476 582 0.25
477 500 0.21
478 410 0.17
479 85 0.04
480 165 0.07
481 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (474 bp):
AAGAAAAGCTTTTCTTTCCACCGTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACAT
GAATACTCATACTAATCCCCGTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTATTAGG
ATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCT
AAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGATTAG
GCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATC
TTTTCTTTACCTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCATCGATTCTC
ATAATAGTCTCCATTCTTTTAAGATTGAGAAGCAAAAACACATTCCCTTCATTAGGATACATGAC
ATTGATGCTTTGGTGTCGT
Found at i:1633893 original size:160 final size:160
Alignment explanation
Indices: 1631416--1634447 Score: 973
Period size: 159 Copynumber: 19.1 Consensus size: 160
1631406 GTTTGGCGTT
* * * *
1631416 GCAAGAAAAGC-TTT-TTTTGCACCGTTTTGGATAGAATCAAAGTTTGTCTCTTAAATATGACAA
1 GCAAGAAAAGCTTTTCTTTTCCACCATTTTTGATAAAATCAAAGTTTGTCTCTTAAATA-GACAA
* ** * * * * * *
1631479 ACATGAATACTCATACTAATCCCTGTTCTTTTCAAGATTA-GACACCATAAACATAGTCTTC-TC
65 ACATGAATACTCATAATAATCCCCATTCTTTTTAGGATTAGGA-AGCATAAACACATTCTCCTTC
* * * * * *
1631542 ATTTGAATAGATCATAATGATGCTTTGGTTTT
129 ATTAGGATACATGATATTGATGCTTTGGTTTC
* * * * * * * * *
1631574 GCAAGAAAGGC-ATT-TTTCCCACCAATTTTTG-TAAAGTCTAAGTTCGTGCT-TCAAATGTGAA
1 GCAAGAAAAGCTTTTCTTTTCCACC-ATTTTTGATAAAATCAAAGTTTGT-CTCTTAAAT-AGAC
* * ** * * * *
1631635 AAACATGGATTCT-AGTAA-AGATCTTCGTTCATTTT-GTGATTAGGTA-CTATAAACACATTTT
63 AAACATGAATACTCA-TAATA-ATCCCCATTCTTTTTAG-GATTAGGAAGC-ATAAACACATTCT
* * * ** *
1631696 GC-TCATTAGGATAAATGATATTGATGATTTTATTTT
124 CCTTCATTAGGATACATGATATTGATGCTTTGGTTTC
* * * ** ** *
1631732 GCATGAAAATCTTTTCTTTACC-TTATTTTTCTTAAAATCAAAGTTAATG-CT-TTAAATAAGGC
1 GCAAGAAAAGCTTTTCTTTTCCACCATTTTTGATAAAATCAAAGTT--TGTCTCTTAAAT-AGAC
* * * * * * * *
1631794 AAGCATCAATTCTCATAATAGTCTCCATTCTTTTCAAGATT-GAGAAGCAAAAACACATTC-CCT
63 AAACATGAATACTCATAATAATCCCCATTCTTTTTAGGATTAG-GAAGCATAAACACATTCTCCT
* *
1631857 TCATTAGGATGCATGATATTGATGCTTTGGTGTC
127 TCATTAGGATACATGATATTGATGCTTTGGTTTC
* * * * * * * *
1631891 GTAAGAAATGCTTTTC-TTTCCATCGTTTGTGACAGAATCAAAGTTTGTCTCTTAAATACGACAC
1 GCAAGAAAAGCTTTTCTTTTCCACCATTTTTGATAAAATCAAAGTTTGTCTCTTAAATA-GACAA
* * * * * * *
1631955 ACAAGAATACTGATAATAATCCCC-TT-TTTTTCAGGATTAGGTACCATAAACATAGTCTTCTT-
65 ACATGAATACTCATAATAATCCCCATTCTTTTT-AGGATTAGGAAGCATAAACACATTCTCCTTC
* *
1632017 ATTAGGATACACGAT-TTGATGCTTTAGTTTC
129 ATTAGGATACATGATATTGATGCTTTGGTTTC
* * * * * * * *
1632048 GCAAGAAAGGC-TTTC-TTCCCCCCAATGTTT-ATAAAGTCTAAA-TTCGTGTCTCAAATGAGAC
1 GCAAGAAAAGCTTTTCTTTTCCACC-ATTTTTGATAAAATC-AAAGTTTGTCTCTTAAAT-AGAC
* * * *** * * *
1632109 AAACATGGATTCT-AGTAATGATCTTTATTC-ATTTAGTGATTTGGCA-CTATAAACACATTCTC
63 AAACATGAATACTCA-TAATAATCCCCATTCTTTTTAG-GATTAGGAAGC-ATAAACACATTCTC
* * ** *
1632171 C-TCATTAGGATAAATGATATTGATGATTTTCTTTT
125 CTTCATTAGGATACATGATATTGATGCTTTGGTTTC
* * * ** ** * *** ** * *
1632206 ACAATGGAAATCTTTTCTTAGCC-TTATTCTCCTTAAAATCAAAGTTCATCTTTTAAATATGGCA
1 GCAA-GAAAAGCTTTTCTTTTCCACCATTTTTGATAAAATCAAAGTTTGTCTCTTAAATA-GACA
* * * * * * * * *
1632270 ATCATCG-ATTCTCGTAATAGTCTCTATTCTTTTTAAGATTGGGAAGCAAAAACACATTC-CCTT
64 AACAT-GAATACTCATAATAATCCCCATTCTTTTTAGGATTAGGAAGCATAAACACATTCTCCTT
* *
1632333 CATTAGGATACATGACATTGATGCTTTGGTGTC
128 CATTAGGATACATGATATTGATGCTTTGGTTTC
* *
1632366 GTAAGAAAAGCTTTTCTTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAA
1 GCAAGAAAAGCTTTTCTTTTCCACCATTTTTGATAAAATCAAAGTTTGTCTCTTAAATA-GACAA
* * * * * * *
1632431 ACAAGAATACTCATACTAATCCCCGTTCTTTTTAGGATTA-GACAGCGTAAACATAGTCTTCTT-
65 ACATGAATACTCATAATAATCCCCATTCTTTTTAGGATTAGGA-AGCATAAACACATTCTCCTTC
*
1632494 ATTAGGATACATCATATTGATGCTTTGGTTTC
129 ATTAGGATACATGATATTGATGCTTTGGTTTC
* * *
1632526 GCAAGAAAGGCTTTT-TTTTCACACCAATTTTTG-TAAAGTCTAAGTTCATG-C-CTGT-AAT-G
1 GCAAGAAAAGCTTTTCTTTTC-CACC-ATTTTTGATAAAATCAAAGTT--TGTCTCT-TAAATAG
* * * * **** * * *
1632585 AGATACAT-ATAGATTCTAGTAA-ATATCTTTTTTCATTTTT-TGAATAGGTA-CAATAAACA-A
61 ACAAACATGA-ATACTC-A-TAATA-ATCCCCATTC-TTTTTAGGATTAGGAAGC-ATAAACACA
* * * ** *
1632645 TTCTCC-TC-TTCGGGATAAATGATATTGATGATTTTATTTT
120 TTCTCCTTCATT-AGGATACATGATATTGATGCTTTGGTTTC
* * * * *** *** ** * *
1632685 GCATGGAAATCTTTTC-TTTACGTTATTTTCCTTAAAATCAAAGTTCATC-CTTTAAACAAACCA
1 GCAAGAAAAGCTTTTCTTTTCCACCATTTTTGATAAAATCAAAGTTTGTCTC-TTAAATAGA-CA
* * * ** * * * * * *
1632748 AGCTTCG-ATTCTCATAATAGCCCCCATTCCTTTTAAGATTGGGAATCGA-ACACATATTC-CCT
64 AACAT-GAATACTCATAATAATCCCCATTCTTTTTAGGATTAGGAAGC-ATAAACACATTCTCCT
* * * *
1632810 TTATTAGGATACACGAAATTGATGCTTTGGTGTC
127 TCATTAGGATACATGATATTGATGCTTTGGTTTC
** * * * * *
1632844 ATAAGAGAAGCTTTTC-TTTCCACCGTTTTCGATAAAATCAAAGTTTGTCTCTCAAATACAACAA
1 GCAAGAAAAGCTTTTCTTTTCCACCATTTTTGATAAAATCAAAGTTTGTCTCTTAAATA-GACAA
* * * * * * *** * *
1632908 ACATGAATACTCATACTAATCCCCGTTCTTTTCAGGATTAGGCACCACAAATGTAGTCTTC-TCA
65 ACATGAATACTCATAATAATCCCCATTCTTTTTAGGATTAGGAAGCATAAACACATTCTCCTTCA
* *
1632972 TTAGGATACATCATAATGATGCTTTGG-TTC
130 TTAGGATACATGATATTGATGCTTTGGTTTC
* * * * * * *
1633002 TGCAAGAAAGGC-ATT-TTTCCCACCAATTTTTG-TAAAGTCTAAGTTCGTGC-CTCAAATGAGA
1 -GCAAGAAAAGCTTTTCTTTTCCACC-ATTTTTGATAAAATCAAAGTTTGT-CTCTTAAAT-AGA
* ** * * * *
1633063 CAAACATTG-ATTCT-AGTAA-AGATCTTCGTTCATTTT-GTGATTAGG-TGCTATAAACACAAT
62 CAAACA-TGAATACTCA-TAATA-ATCCCCATTCTTTTTAG-GATTAGGAAGC-ATAAACACATT
* * * * ** *
1633123 CTAC-TCGTTAGGATAAATGATATTGATGATTTTCTTTT
122 CTCCTTCATTAGGATACATGATATTGATGCTTTGGTTTC
* * ** * *
1633161 GCATGAAAATCTTTTCTTTAT-C-TTATTTTTCATAAAATCAAAG-TTGATC-CTTTAAATAAGG
1 GCAAGAAAAGCTTTTCTTT-TCCACCATTTTTGATAAAATCAAAGTTTG-TCTC-TTAAAT-AGA
* * * * * * * *
1633222 CAAGCATCG-ATTCTCATAACAGTCTCCATTCTTTTCAAGATT-GAGAAGCAAAAACACATTC-C
62 CAAACAT-GAATACTCATAATAATCCCCATTCTTTTTAGGATTAG-GAAGCATAAACACATTCTC
* * * *
1633284 CTTCATTAGGATGCATGACACTGATGCTTTGGTGTC
125 CTTCATTAGGATACATGATATTGATGCTTTGGTTTC
* * * * * * *
1633320 GTAAGAAAAGCTTTTC-TTTCCATCGTTTGTGACAGAATCAAAGTTTGTCTCTTAAATACGACAC
1 GCAAGAAAAGCTTTTCTTTTCCACCATTTTTGATAAAATCAAAGTTTGTCTCTTAAATA-GACAA
* * * * * * * * * *
1633384 ACAAGAATACTGATAATAATCACCTTTTTTTTTCGAGATTAGG-TGCCATAAACATAGTCTTCTT
65 ACATGAATACTCATAATAATCCCCATTCTTTTTAG-GATTAGGAAG-CATAAACACATTCTCCTT
* * *
1633448 -ATTAGGATAGACGAT-TTGATGCTTTAGTTTC
128 CATTAGGATACATGATATTGATGCTTTGGTTTC
* * * * * * *
1633479 GCAAGAAAGGC-TTTC-TTCCCCCCAATTTTT-ATAAAGTCTAAA-TTCG-CGCCTCAAATGAGA
1 GCAAGAAAAGCTTTTCTTTTCCACC-ATTTTTGATAAAATC-AAAGTTTGTC-TCTTAAAT-AGA
* * * *** * * *
1633539 CAAACATGGATTCT-AGTAATGATCTTTATTC-ATTTAGTGATTTGGCA-CTATAAACACATTCT
62 CAAACATGAATACTCA-TAATAATCCCCATTCTTTTTAG-GATTAGGAAGC-ATAAACACATTCT
* * ** *
1633601 CC-TCATTAGGATAAATGATATTGATGATTTTCTTTT
124 CCTTCATTAGGATACATGATATTGATGCTTTGGTTTC
* * ** ** *** *** * *
1633637 GCAATGGAAATCTTTTCTTAGCC-TTATTTTCCTTAAAATCAAAGTTCAACTTTTAAATATGGCA
1 GCAA-GAAAAGCTTTTCTTTTCCACCATTTTTGATAAAATCAAAGTTTGTCTCTTAAATA-GACA
* * * * * * *
1633701 AGCATCG-ATTCTCGTAATAGTCTCCATTCTTTTTAGGATTGGGAAGCAAAAACACATTC-CCTT
64 AACAT-GAATACTCATAATAATCCCCATTCTTTTTAGGATTAGGAAGCATAAACACATTCTCCTT
* *
1633764 CATTAGGATACATGACATTGATGCTTTGGTGTC
128 CATTAGGATACATGATATTGATGCTTTGGTTTC
* *
1633797 GTAAGAAAAGCTTTTCTTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAA
1 GCAAGAAAAGCTTTTCTTTTCCACCATTTTTGATAAAATCAAAGTTTGTCTCTTAAATA-GACAA
* * * * * * *
1633862 ACATGAATACTCATACTAATCCCCGTTCTTTTTAGGATTA-GACAGCGTCAACATAGTCTTCTT-
65 ACATGAATACTCATAATAATCCCCATTCTTTTTAGGATTAGGA-AGCATAAACACATTCTCCTTC
* *
1633925 ATTTGGATACATCATATTGATGCTTTGGTTTC
129 ATTAGGATACATGATATTGATGCTTTGGTTTC
* * * * *
1633957 GCAAGAAAGGCTTTT-TTTTCACACCAATTTTTG-TAAAGTCTAAGTTCGTGC-CTCT-ACTGAG
1 GCAAGAAAAGCTTTTCTTTTC-CACC-ATTTTTGATAAAATCAAAGTTTGT-CTCT-TAAAT-AG
* * * * * **** * ** *
1634018 ATACATATGGATTCT-AGTAA-AGATCTGTTTTCATTTTT-TGAACAGGAA-CTGTAAACA-ATT
61 ACAAACATGAATACTCA-TAATA-ATCCCCATTC-TTTTTAGGATTAGGAAGC-ATAAACACATT
* * * * ** *
1634078 CTCC-TC-TTCATGATAAATGATATTGCTGATTTTATTTT
122 CTCCTTCATT-AGGATACATGATATTGATGCTTTGGTTTC
* * * *** *** ** * *
1634116 GCATGGAAATCTTTTCTTTAT--GTTATTTTCCTTAAAATCAAAGTTCATC-CTTTAAACAAACC
1 GCAAGAAAAGCTTTTCTTT-TCCACCATTTTTGATAAAATCAAAGTTTGTCTC-TTAAATAGA-C
* * * * * * * * *
1634178 AAGCTTCG-ATTCTCATAAT-AGCCACCATTCCTTTTAAGATTAGGAATCGA-ACACACATTC-A
63 AAACAT-GAATACTCATAATAATCC-CCATTCTTTTTAGGATTAGGAAGC-ATAAACACATTCTC
** * *
1634239 CTTTTTTAGGATACATGAAATTGATGCTTTGGTGTC
125 CTTCATTAGGATACATGATATTGATGCTTTGGTTTC
* * * * *
1634275 GTAAGAAAAGCTTTTC-TTTCCACCGTTTTCGATAAAATCAAAGTTTATCTCTTAAAAACGACAA
1 GCAAGAAAAGCTTTTCTTTTCCACCATTTTTGATAAAATCAAAGTTTGTCTCTTAAATA-GACAA
* * * ** * *
1634339 ACATGAATACTCA-AACTAATCCCCATTCTTTTCAGGATTAGGCACCAT-AACGTAGTGTCC-TC
65 ACATGAATACTCATAA-TAATCCCCATTCTTTTTAGGATTAGGAAGCATAAACACATTCTCCTTC
* * *
1634401 ATTAGTATACATCATATTGACGCTTTGGTTTC
129 ATTAGGATACATGATATTGATGCTTTGGTTTC
* *
1634433 GCATGAAAGGCTTTT
1 GCAAGAAAAGCTTTT
1634448 TTCCTACCAA
Statistics
Matches: 2049, Mismatches: 645, Indels: 360
0.67 0.21 0.12
Matches are distributed among these distances:
155 1 0.00
156 50 0.02
157 148 0.07
158 495 0.24
159 732 0.36
160 557 0.27
161 64 0.03
162 2 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (160 bp):
GCAAGAAAAGCTTTTCTTTTCCACCATTTTTGATAAAATCAAAGTTTGTCTCTTAAATAGACAAA
CATGAATACTCATAATAATCCCCATTCTTTTTAGGATTAGGAAGCATAAACACATTCTCCTTCAT
TAGGATACATGATATTGATGCTTTGGTTTC
Found at i:1635013 original size:395 final size:395
Alignment explanation
Indices: 1634277--1635051 Score: 1140
Period size: 395 Copynumber: 2.0 Consensus size: 395
1634267 TTGGTGTCGT
1634277 AAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTATCTCTTAAAAACGACAAACA
1 AAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTATCTCTTAAAAACGACAAACA
* * * * *
1634342 TGAATACTCAAACTAATCCCCATTCTTTTCAGGATTAGGCACCATAACGTAGTGTCCTCATTAGT
66 TGAATACTCAAACTAATCCCCATTCTTTTCAAGATTAGACACCATAACATAGTCTCCTCATTAGA
* * * *
1634407 ATACATCATATTGACGCTTTGGTTTCGCATGAAAGGCTTTTTTCCTACCAATTTTTGTAAAGTCT
131 ATACATCATAATGACGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTCT
* *
1634472 AAGTTCGTGACTCAAATGAGACAAACATGGATTCTAGTAATGATATTCACTCTTTTGGTCATTAG
196 AAGTTCGTGACTCAAATGAGACAAACATAGATTCTAGTAAAGATATTCACTCTTTTGGTCATTAG
1634537 ACACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATC
261 ACACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATC
* *
1634602 TTTTCTTTGCCTTATTTTCCTTACAATCAAAGTTCATCCTTTAAATAAGGCAAGCCACGTTTGGG
326 TTTTCTTTACCTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCCACGTTTGGG
1634667 GTTGC
391 GTTGC
* * * * * *
1634672 AAGAAAAGCTTTT-TTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACA
1 AAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTATCTCTTAAAAACGACAAACA
* ** ** *
1634736 TGAATACTCATACTAATCCCTGTTCTTTTCAAGATTAGACACCATAAACATAGTCTTGTCATTTG
66 TGAATACTCAAACTAATCCCCATTCTTTTCAAGATTAGACACCAT-AACATAGTCTCCTCATTAG
* * *
1634801 AATAGATCATAATGATGCTTTGGTTTTGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTC
130 AATACATCATAATGACGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTC
* * ** *
1634866 TAAGTTCGTGCCTCAAATGAGACAAACATAGATTCTAGTAAAGATCTTCGTTCATTTT-GTGATT
195 TAAGTTCGTGACTCAAATGAGACAAACATAGATTCTAGTAAAGATATTCACTC-TTTTGGTCATT
*** * **
1634930 AGGTGCTATAAACACATTCTGCTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAA
259 AGACACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAA
* * *
1634995 TCTTTTCTTTATCTTATTTTTCTTAAAATCAAAGTTGATCCTTTAAATAAGGCAAGC
324 TCTTTTCTTTACCTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGC
1635052 ATCGATTCTC
Statistics
Matches: 336, Mismatches: 42, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
394 85 0.25
395 247 0.74
396 4 0.01
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (395 bp):
AAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTATCTCTTAAAAACGACAAACA
TGAATACTCAAACTAATCCCCATTCTTTTCAAGATTAGACACCATAACATAGTCTCCTCATTAGA
ATACATCATAATGACGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTCT
AAGTTCGTGACTCAAATGAGACAAACATAGATTCTAGTAAAGATATTCACTCTTTTGGTCATTAG
ACACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATC
TTTTCTTTACCTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCCACGTTTGGG
GTTGC
Found at i:1636038 original size:477 final size:473
Alignment explanation
Indices: 1635126--1636496 Score: 1567
Period size: 476 Copynumber: 2.9 Consensus size: 473
1635116 AGGATGCATC
1635126 ACACATTCACTTTTTTAGGATACATGAAATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTC
1 ACACATTCACTTTTTTAGGATACATGAAATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTC
* * * * * * *
1635191 CATCGTTTGTGACAGAATCAAAGTTTGTCTCTTAAATACGACACACAAGAATACTGATAATAATC
66 CACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATACTAATC
* * ** * *
1635256 ACCTTTTTTTTCGAGATTAGGTGCCATAAACATAGTCTTATTATTAGGATACA-CG-ATTTGATG
131 ACCTTCTTTTTAG-GATTAGCAG-CATCAACATAGTCTTCTTATTAGGATACATCGTA-TTGATG
* * * * * *
1635319 CTTTAGTTTCGCAAGAAAGGCATTCTTCCCCCCAATTTTTATAAAGTCTAAATTCGCT-CCTCAA
193 CTTTGGTTTCGCAAGAAAGGC-TTTTTTCCACCAATTTTTGTAAAGTCTAAGTTCG-TGCCTCAA
* * ***
1635383 ATGAGACAAACATGGATTCTAGTAATGATCTTTTTTCATTTAGTGATTTGGCACTATAAACACAT
256 ATGAGACAAACATGGATTCTAGTAAAGATCTGTTTTCATTTAGTGAACAGGCACTATAAACACAT
* * *
1635448 TCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTACAATGGAAATCTTTTCTTAGCCTTA
321 TCTCCTCATTAGGATAAATGATATTCAGGATTTTATTTTACAATGGAAATCTTTTCTTAG-CTTA
* * *** * * *
1635513 TTTTCCGTAAAATCAAAGTTCAACTTTTAAATATGGCAAGCATCGATTCTCGTAATAGTCTCCAT
385 TTTTCCGTAAAATCAAAGTTCAACCTTTAAACAAACCAAGCATCGATTCTCATAATAGCCACCAT
* * *
1635578 TCTTTTTAGGATTGGGAAGCAAAA
450 TCCTTTTAAGATTAGGAAGCAAAA
* ** *
1635602 ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTT
1 ACACATTCACTTTTTTAGGATACATGAAATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTC-TTT
*
1635667 CCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATACTAAT
65 CCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATACTAAT
* *
1635732 CCCCGTTCTTTTTAGGATTAGACAGCGTCAACATAGTCTTCTTATTAGGATACATCGTATTGATG
130 CACC-TTCTTTTTAGGATTAG-CAGCATCAACATAGTCTTCTTATTAGGATACATCGTATTGATG
* *
1635797 CTTTGGTGTCGCAAGAAAGGCTTTTTTTCACACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCTA
193 CTTTGGTTTCGCAAGAAAGGC-TTTTTTC-CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAA
* * * * ** * * * *
1635862 CTGAGATACATATGGATTCTAGTAAAGATCTGTTTTCATTTTTTGAACAGGTACTGTAAATA-GT
256 ATGAGACAAACATGGATTCTAGTAAAGATCTGTTTTCATTTAGTGAACAGGCACTATAAACACAT
*
1635926 TCTCCTC-TTCAGGATAAATGATATTCAGGATTTTATTTTGC-ATGGAAATCTTTTCTTTATG-T
321 TCTCCTCATT-AGGATAAATGATATTCAGGATTTTATTTTACAATGGAAATCTTTTC-TTA-GCT
* ** *
1635988 TATTTTCCTTAAAATCAAAGTTCTTCCTTTAAACAAACCAAGCTTCGATTCTCATAATAGCCACC
383 TATTTTCCGTAAAATCAAAGTTCAACCTTTAAACAAACCAAGCATCGATTCTCATAATAGCCACC
* * *
1636053 ATTCCTTTTAAGATTAGGAATCGAAC
448 ATTCCTTTTAAGATTAGGAAGCAAAA
1636079 ACACATTCACTTTTTTAGGATACATGAAATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTC
1 ACACATTCACTTTTTTAGGATACATGAAATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTC
* * * *
1636144 CACCGTTTTCGATAAAATCAAAGTTTATCTCTTACAA-ACGACAAACATGAATACTCATGCTAAT
66 CACCGTTTTTGATAGAATCAAAGTTTGTCTCTTA-AATACGACAAACATGAATACTCATACTAAT
* * * * ** * * *
1636208 CTTCATTCTTTTCAGGATTAGGCACCA-CAAACGCAGTCTTCTCATTAAGATACATCATATTGAT
130 C-ACCTTCTTTTTAGGATTA-GCAGCATC-AACATAGTCTTCTTATTAGGATACATCGTATTGAT
* *
1636272 GCTTTGGTTTCGCAGGAAAGGCTTTTTTCCTACCAATTTTTGTAAAGTCTAAGTTCGTGACTCAA
192 GCTTTGGTTTCGCAAGAAAGGCTTTTTTCC-ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAA
* * ** * * * ** *
1636337 ATGAGACAAACATGGATTCTAGTAATGATAT-TCACTCTTTTGGTCATTAGACACTATAAACACA
256 ATGAGACAAACATGGATTCTAGTAAAGATCTGT-TTTCATTTAGTGAACAGGCACTATAAACACA
* * * * * * * *
1636401 TTCTCCTCAATAGGATAAATGATATTGATGATTTTCTTTTGC-ATGAAAATCTTTTCTTTGCCCT
320 TTCTCCTCATTAGGATAAATGATATTCAGGATTTTATTTTACAATGGAAATCTTTTCTTAG-CTT
* * *
1636465 ATTTTCCTTACAATCAAAGTTCATCCTTTAAA
384 ATTTTCCGTAAAATCAAAGTTCAACCTTTAAA
1636497 TAAGGCAAGC
Statistics
Matches: 758, Mismatches: 117, Indels: 40
0.83 0.13 0.04
Matches are distributed among these distances:
474 3 0.00
475 84 0.11
476 265 0.35
477 247 0.33
478 80 0.11
479 79 0.10
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.37
Consensus pattern (473 bp):
ACACATTCACTTTTTTAGGATACATGAAATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTC
CACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATACTAATC
ACCTTCTTTTTAGGATTAGCAGCATCAACATAGTCTTCTTATTAGGATACATCGTATTGATGCTT
TGGTTTCGCAAGAAAGGCTTTTTTCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAG
ACAAACATGGATTCTAGTAAAGATCTGTTTTCATTTAGTGAACAGGCACTATAAACACATTCTCC
TCATTAGGATAAATGATATTCAGGATTTTATTTTACAATGGAAATCTTTTCTTAGCTTATTTTCC
GTAAAATCAAAGTTCAACCTTTAAACAAACCAAGCATCGATTCTCATAATAGCCACCATTCCTTT
TAAGATTAGGAAGCAAAA
Found at i:1636877 original size:395 final size:396
Alignment explanation
Indices: 1636126--1636901 Score: 1121
Period size: 395 Copynumber: 2.0 Consensus size: 396
1636116 TTGGTGTCGT
1636126 AAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTATCTCTTACAAACGACAAACA
1 AAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTATCTCTTACAAACGACAAACA
* * * * *
1636191 TGAATACTCATGCTAATCTTCATTCTTTTCAGGATTAGGCACCACAAACGCAGTCTTCTCATTAA
66 TGAATACTCATACTAATCCTCATTCTTTTCAAGATTAGACACCACAAACACAGTCTTCTCATTAA
* * * *
1636256 GATACATCATATTGATGCTTTGGTTTCGCAGGAAAGGCTTTTTTCCTACCAATTTTTGTAAAGTC
131 GATACATCATAATGATGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTC
* *
1636321 TAAGTTCGTGACTCAAATGAGACAAACATGGATTCTAGTAATGATATTCACTCTTTTGGTCATTA
196 TAAGTTCGTGACTCAAATGAGACAAACATGGATTCTAGTAAAGATATCCACTCTTTTGGTCATTA
1636386 GACACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAAT
261 GACACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAAT
* *
1636451 CTTTTCTTTGCCCTATTTTCCTTACAATCAAAGTTCATCCTTTAAATAAGGCAAGCCACGTTTGG
326 CTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCCACGTTTGG
1636516 GGTTGC
391 GGTTGC
* * * * *
1636522 AAGAAAAGCTTTT-TTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTA-AATATGACAAAC
1 AAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTATCTCTTACAA-ACGACAAAC
* * * *
1636585 ATGAATACTCATACTAATCC-CTGTTCTTTTCAAGATTAGACACCATAAACATAGTCTTGTCATT
65 ATGAATACTCATACTAATCCTC-ATTCTTTTCAAGATTAGACACCACAAACACAGTCTTCTCATT
* * *
1636649 -TGAATAGATCATAATGATGCTTTGGTTTTGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAA
129 AAG-ATACATCATAATGATGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAA
* * ** *
1636713 GTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTCCGTTCATTTT-GTG
193 GTCTAAGTTCGTGACTCAAATGAGACAAACATGGATTCTAGTAAAGATATCCACTC-TTTTGGTC
*** * **
1636777 ATTAGGTGCTATAAACACATTCTGCTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCATGA
257 ATTAGACACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTTTTGCATGA
* * * *
1636842 AAATCTTTTCTTTATCTTATTTTTCTTAAAATCAAAGTTGATCCTTTAAATAAGGCAAGC
322 AAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGC
1636902 ATCGATTCTC
Statistics
Matches: 336, Mismatches: 40, Indels: 9
0.87 0.10 0.02
Matches are distributed among these distances:
394 4 0.01
395 315 0.94
396 17 0.05
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (396 bp):
AAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTATCTCTTACAAACGACAAACA
TGAATACTCATACTAATCCTCATTCTTTTCAAGATTAGACACCACAAACACAGTCTTCTCATTAA
GATACATCATAATGATGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTC
TAAGTTCGTGACTCAAATGAGACAAACATGGATTCTAGTAAAGATATCCACTCTTTTGGTCATTA
GACACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAAT
CTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCCACGTTTGG
GGTTGC
Found at i:1637486 original size:871 final size:864
Alignment explanation
Indices: 1635678--1637369 Score: 1991
Period size: 871 Copynumber: 2.0 Consensus size: 864
1635668 CACCATTTTT
* * ** * * ** ** *
1635678 GATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATACTAATCCCCGTTCTTT
1 GATAGAATAAAACTTTCCCTCTTAAACATGACAAACATGAATACTCATAAGAAAACCTGTTCTTT
* * * * * * * * *
1635743 TTAGGATTAGACAGCGTCAACATAGTCTTCTTATTAGGATACATCGTATTGATGCTTTGGTGTCG
66 TCAAGATTAGACACCATAAACATAGTCTTCTCATTAGAATACATCATAATGATGCTTTGGTGTCG
* * * * * *
1635808 CAAGAAAGGCTTTTTTTCACACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCTACTGAGATACAT
131 CAAGAAAGGCTATTTTTCACACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAAC
*** * * * *
1635873 ATGGATTCTAGTAAAGATCTGTTTTCATTTTTTGAACAGGTACTGTAAATAGTTCTCCTCTTCAG
196 ATGGATTCTAGTAAAGATCTCCGTTCATTTTGTGAACAGGTACTATAAACAATTCTCCTCTTCAG
* *
1635938 GATAAATGATATTCAGGATTTTATTTTGCATGGAAATCTTTTCTTTATGTTATTTTCCTTAAAAT
261 GATAAATGATATTCAGGATTTTATTTTGCATGAAAATCTTTTCTTTATCTTATTTTCCTTAAAAT
* * *
1636003 CAAAGTTCTTCCTTTAAACAAACCAAGCTTCGATTCTCATAATAGCCACCATTCCTTTTAAGATT
326 CAAAGTTCATCCTTTAAACAAACCAAGCATCGATTCTCATAACAGCCACCATTCCTTTTAAGATT
* * * ** *
1636068 AGGAATCGAACACACATTCACTTTTTTAGGATACATGAAATTGATGCTTTGGTGTCGTAAGAAAA
391 AGGAAGCAAAAACACATTCACTTCATTAGGATACATGAAACTGATGCTTTGGTGTCGTAAGAAAA
* *
1636133 GCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTATCTCTTACAAACGACAAACATGAATAC
456 GCTTTTCTTTCCACCGTTTTCGACAAAATCAAAGTTTATCTCTTACAAACGACAAACAAGAATAC
** ** *
1636198 TCATGCTAATCTTCATTCTTTTCAGGATTAGGCACCACAAACGCAGTCTTCTCATTAAGATACAT
521 TCATAATAATCACCATTCTTTTCAGGATTAGGCACCACAAACACAGTCTTCTCATTAAGATACAT
* * * * * *
1636263 CATATTGATGCTTTGGTTTCGCAGGAAAGGCTTTTTTCCTACCAATTTTTGTAAAGTCTAAGTTC
586 CATATTGATGCTTTAGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAAAGTCTAAATTC
* * *
1636328 GTGACTCAAATGAGACAAACATGGATTCTAGTAATGATATTCACTCTTTTGGTCATTAGACACTA
651 GCGACTCAAATGAGACAAACATGGATTCTAGTAATGATATTCACTCATTTAGTCATTAGACACTA
*
1636393 TAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCT
716 TAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTTTTACATGAAAA----TTCT
* * * *
1636458 TTGCCCTATTTTCCTTACAATCAAAGTTCATCCTTTAAATAAGGCAAGCCACGTTTGGGGTTGCA
777 TAGCCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCCACGATT--GCTTGCA
* * * **
1636523 AGAAAAGCTTTTTTTGCACCGTTTTT
840 AGAAAACCTTTTTTT-CACAGATTGG
* * ** * ** **
1636549 GATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCATACTAATCCCTGTTCTTT
1 GATAGAATAAAACTTTCCCTCTTAAACATGACAAACATGAATACTCATAAGAAAACCTGTTCTTT
* * * * *
1636614 TCAAGATTAGACACCATAAACATAGTCTTGTCATTTGAATAGATCATAATGATGCTTTGGTTTTG
66 TCAAGATTAGACACCATAAACATAGTCTTCTCATTAGAATACATCATAATGATGCTTTGGTGTCG
*
1636679 CAAGAAAGGC-ATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAAC
131 CAAGAAAGGCTATTTTTCACACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAAC
** * *
1636743 ATGGATTCTAGTAAAGATCTCCGTTCATTTTGTGATTAGGTGCTATAAACACATTCTGCTCGTT-
196 ATGGATTCTAGTAAAGATCTCCGTTCATTTTGTGAACAGGTACTATAAACA-ATTCTCCTC-TTC
* * * *
1636807 AGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTATCTTATTTTTCTTAAA
259 AGGATAAATGATATTCAGGATTTTATTTTGCATGAAAATCTTTTCTTTATCTTATTTTCCTTAAA
* * ** * *
1636872 ATCAAAGTTGATCCTTTAAATAAGGCAAGCATCGATTCTCATAACAGTCTCCATT-CTTTTCAAG
324 ATCAAAGTTCATCCTTTAAACAAACCAAGCATCGATTCTCATAACAGCCACCATTCCTTTT-AAG
* * *
1636936 ATT-GAGAAGCAAAAACACATTCCCTTCATTAGGATGCATGACACTGATGCTTTGGTGTCGTAAG
388 ATTAG-GAAGCAAAAACACATTCACTTCATTAGGATACATGAAACTGATGCTTTGGTGTCGTAAG
* * * * *
1637000 AAAAGCTTTTCTTTCCATCGTTTGT-GACAGAATCAAAGTTTGTCTTTTA-AATACGACACACAA
452 AAAAGCTTTTCTTTCCACCGTTT-TCGACAAAATCAAAGTTTATCTCTTACAA-ACGACAAACAA
* * * * * * * * *
1637063 GAATACTGATAATAATCACCGTTTTTTTC-GAGATTATGTACCATAAACATAGTCTTCTTATTAG
515 GAATACTCATAATAATCACCATTCTTTTCAG-GATTAGGCACCACAAACACAGTCTTCTCATTAA
*
1637127 GATACA-CA-ATTTGATGCTTTAGTTTCGCAAGAAAGGCTTTCTTCCCCCCAATTTTTATAAAGT
579 GATACATCATA-TTGATGCTTTAGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAAAGT
* * * * * *
1637190 CTAAATTCGCGCCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTTATTCATTTAGTGATT
643 CTAAATTCGCGACTCAAATGAGACAAACATGGATTCTAGTAATGATATTCACTCATTTAGTCATT
* * * * *
1637255 TGGCACTATAAACACATTCTCTTCATTAGGATAAATGATATTGATGATTTTCTTTTACAATGGAA
708 AGACACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTTTTAC-ATGAAA
* * *
1637320 A-TCTTAGCCTTATTTTCCTTAAAATCAAAGTTCATCTTTTAAATATGGCA
772 ATTCTTAGCCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCA
1637370 GTCATCGATT
Statistics
Matches: 706, Mismatches: 106, Indels: 23
0.85 0.13 0.03
Matches are distributed among these distances:
866 44 0.06
869 1 0.00
870 255 0.36
871 403 0.57
872 3 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (864 bp):
GATAGAATAAAACTTTCCCTCTTAAACATGACAAACATGAATACTCATAAGAAAACCTGTTCTTT
TCAAGATTAGACACCATAAACATAGTCTTCTCATTAGAATACATCATAATGATGCTTTGGTGTCG
CAAGAAAGGCTATTTTTCACACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAAC
ATGGATTCTAGTAAAGATCTCCGTTCATTTTGTGAACAGGTACTATAAACAATTCTCCTCTTCAG
GATAAATGATATTCAGGATTTTATTTTGCATGAAAATCTTTTCTTTATCTTATTTTCCTTAAAAT
CAAAGTTCATCCTTTAAACAAACCAAGCATCGATTCTCATAACAGCCACCATTCCTTTTAAGATT
AGGAAGCAAAAACACATTCACTTCATTAGGATACATGAAACTGATGCTTTGGTGTCGTAAGAAAA
GCTTTTCTTTCCACCGTTTTCGACAAAATCAAAGTTTATCTCTTACAAACGACAAACAAGAATAC
TCATAATAATCACCATTCTTTTCAGGATTAGGCACCACAAACACAGTCTTCTCATTAAGATACAT
CATATTGATGCTTTAGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAAAGTCTAAATTC
GCGACTCAAATGAGACAAACATGGATTCTAGTAATGATATTCACTCATTTAGTCATTAGACACTA
TAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTTTTACATGAAAATTCTTAGC
CCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCCACGATTGCTTGCAAGAAAA
CCTTTTTTTCACAGATTGG
Found at i:1638076 original size:476 final size:473
Alignment explanation
Indices: 1636522--1640458 Score: 2668
Period size: 475 Copynumber: 8.1 Consensus size: 473
1636512 TTGGGGTTGC
* *
1636522 AAGAAAAGCTTTT-TTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACA
1 AAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACA
* * *
1636586 TGAATACTCATACTAATCCCTGTTCTTTTCAAGATTAGACACCATAAACATAGTCTTGTCATTTG
66 TGAATACTCATACTAATCCC-GTTCTTTTCAGGATTAGACACCATAAACATAGTCTTCTCATTAG
* * * * *
1636651 AATAGATCATAATGATGCTTTGGTTTTGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTC
130 GATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTC
* ***
1636716 TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTCCGTTCATTTTGTGATTA
195 TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGATTA
** * *
1636781 GGTGCTATAAACACATTCTGCTCGTTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAAT
260 GGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAAT
* *
1636846 CTTTTCTTTATCTTATTTTTCTTAAAATCAAAGTTGATCCTTTAAATA-AGGCAAGCATCGATTC
325 CTTTTCTTTA-CTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATATA-GCAAGCATCGATTC
* * * *
1636910 TCATAACAGTCTCCATT-CTTTTCAAGATTGAGAAGCAAAAACACATTCCCTTCATTAGGATGCA
388 TCATAATAGTCTCCATTCCTTTT-AAGATTGGGAATCAAAAACACATTCCCTTCATTAGGATACA
* *
1636974 TGACACTGATGCTTTGGTGTCGT
452 TGA-AATGATGCTTTGGTGTCAT
* * * * *
1636997 AAGAAAAGCTTTTCTTTCCATCGTTTGTGACAGAATCAAAGTTTGTCTTTTAAATACGACACACA
1 AAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACA
* * * * * *
1637062 AGAATACTGATAATAATCACCGTTTTTTTC-GAGATTATG-TACCATAAACATAGTCTTCTTATT
66 TGAATACTCATACTAATC-CCGTTCTTTTCAG-GATTA-GACACCATAAACATAGTCTTCTCATT
* * * *
1637125 AGGATACA-CA-ATTTGATGCTTTAGTTTCGCAAGAAAGGCTTTCTTCCCCCCAATTTTTATAAA
128 AGGATACATCATA-TTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAA
* * * *
1637188 GTCTAAATTCGCGCCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTTATTCATTTAGTGA
192 GTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGA
* * * *
1637253 TTTGGCACTATAAACACATTCTCTTCATTAGGATAAATGATATTGATGATTTTCTTTTACAATGG
257 TTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGC-ATGA
** * *
1637318 AAATCTTAGC----CTTATTTTCCTTAAAATCAAAGTTCATCTTTTAAATATGGC-AGTCATCGA
321 AAATCTTTTCTTTACTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATATAGCAAG-CATCGA
** * *
1637378 TTCTTGTAATAGTCTCCATTCTTTTTAAGATTGGGAAGT-AAAAACACTTTCCCTTCATTAGGAT
385 TTCTCATAATAGTCTCCATTCCTTTTAAGATTGGGAA-TCAAAAACACATTCCCTTCATTAGGAT
*
1637442 ACATGACATTGATGCTTTGGTGTCAT
449 ACATGA-AATGATGCTTTGGTGTCAT
*
1637468 AAGAAAAGCTTTTCTTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAAC
1 AAGAAAAGCTTTTC-TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAAC
* * * * *
1637533 ATGAATACTCATACTAATCCCCATTCTTTTTAGGATTAGACAGCGTAAACATAGTCTTCTTATTA
65 ATGAATACTCATACTAAT-CCCGTTCTTTTCAGGATTAGACACCATAAACATAGTCTTCTCATTA
*
1637598 GGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTTTCACACCAATTTTTGTAAA
129 GGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGC--TTTTTTCCCACCAATTTTTGTAAA
* * * * * * * * *
1637663 GTCGAAGTTCGTGCCTCTAGTGAGATACATATAGA-TCTAGTAAAT-ATCTTTTTTCATTTTTTG
192 GTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGT-AATGATCTTTATTCATTTTGTG
* * * *
1637726 AATAGGTACTATAAA-AAATTCTCCTC-TTCAGGATAAATGATATTGATGATTTTATTTTGCATG
256 ATTAGGCACTATAAACACATTCTCCTCATT-AGGATAAATGATATTGATGATTTTCTTTTGCATG
* * * *
1637789 GAAATCTTTTCTTTACGTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAAGATACCAAGCTTCG
320 AAAATCTTTTCTTTAC-TTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATATAGCAAGCATCG
* * * * * *
1637854 ATTCTCATAATAGCCCCCATTCCTTTTAAGATTGGGAATCGAACACACATTCACTTTATTAGGAT
384 ATTCTCATAATAGTCTCCATTCCTTTTAAGATTGGGAATCAAAAACACATTCCCTTCATTAGGAT
* * *
1637919 ACGTGAAATGGATTCTTTTGTGTCAT
449 ACATGAAAT-GATGCTTTGGTGTCAT
* * * * *
1637945 AAGAAAAGTTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTATCTCTTAAAAACGACAAACA
1 AAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACA
* * * **
1638010 TGAATACTCATAGTAATCCTCGTTCTTTTCAGGATTAGGCACCACAAACGCAGTCTTCTCATTAG
66 TGAATACTCATACTAATCC-CGTTCTTTTCAGGATTAGACACCATAAACATAGTCTTCTCATTAG
** * ** *
1638075 GATACATCATATTGATGCTTTGGTTTCATAGGAAAGGCTTTTTTCTTACCAATTTTCGTAAAGTC
130 GATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTC
* *
1638140 TAAGTTCGTGACTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTC-TTTTGGTCATT
195 TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTT-GTGATT
**
1638204 AGGCACTATAAACACATTCTCCTCAACAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAA
259 AGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAA
* * *
1638269 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATA-AGGCAAGCCTCGATT
324 TCTTTTCTTT-ACTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATATA-GCAAGCATCGATT
* ** * * * *
1638333 CTCGTAGCAATCTCCATT-CTTTTCATGATTTGG-ATGCCAAAACACATTCCCTTCATTAGGGA-
387 CTCATAATAGTCTCCATTCCTTTT-AAGATTGGGAAT-CAAAAACACATTCCCTTCATTA-GGAT
* * * ***
1638395 AAATGACATTGATGCTTTGGGGTTGC
449 ACATGA-AATGATGCTTTGGTGTCAT
** * *
1638421 AAGAAAAGCTTTTCTTTTTACCGTTTTTGATAGAATCAAAGTTTGTTTCTTAAATATGAC--ACA
1 AAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACA
* * * * * * * ** * * * **
1638484 TTAGGATGCATGATATTGAT-GCTTTGGTGTC--G--TA-AGA--A-AAGC-TTTTCTTTCCATC
66 -T-GAATAC-TCATACTAATCCCGTTCTTTTCAGGATTAGACACCATAAACATAGTC-TT-C-TC
* * * * * *** * * * * **
1638539 GTTTGTGACAGAATCAAAGTT--TGTCTCTTAAATACGACACACAAGAATACTGATAATAATCCC
125 ATTAG-GATA-CATCATA-TTGATG-CT-TTGGTTTCG-----CAAGAA-A-GGCT-TTTTTCCC
**** * * ** * * ** * * * *
1638602 -TGTTTTTTTCAAGATTAGGTACCATAAACATAGT-CTTCTTATTAGGATACACAATTCGATGCT
177 ACCAATTTTT---G-TAAAGT--C-T-AAGTTCGTGCCTCAAATGA-GACAAAC-A-TGGAT--T
* ** * * ***** * ***** **
1638665 TTAGCCATCCTTCATCTCTAATCTATTCCATTTTGTTATTTTTTTCTGCTTCTTTCGATTTCTGT
229 CTAG---T-AATGA--TCT--T-TATT-CATTTTGTGATTAGGCACT-ATAAACAC-A-TTCTCC
* * * * * * ***
1638730 TC-TT-GCATCAAT-A-ATT-CTG-TTTAT-TGTT--A-G-AAATCCATCTCAAGATCATTATTT
281 TCATTAGGATAAATGATATTGATGATTT-TCTTTTGCATGAAAAT-CTTTTCTTTA-C-TTATTT
* *** ** ** * ** * * * * *
1638784 AGGCAACCTT-GGTTCATGGTTGTCATCACATGGAAATCTTTTCTTTACGTTAT--TTTCCTTAA
342 -----TCCTTAAAATCAAAG-T-TCATC-C-TTTAAAT-ATAGC---AAG-CATCGATT-CTCAT
* * * * *
1638846 AATCAAAGT-T-CA-TCCTTTAAAGAAACCAAGCTT-CGATTCTCATAATAGCCCCCATT-CCTT
392 AAT---AGTCTCCATTCCTTTTAAG------A--TTGGGA--ATCA-AA-A--ACACATTCCCTT
* ** * ** *
1638906 --TTAAGATTGGGA-ATCGAACACACATTCACTTTATTAG-GAT
440 CATTAGGA-T---ACAT-GAA-A-TGA-T-GCTTTGGT-GTCAT
* * * *
1638946 ACGTGAAATGGATTCTTTGGTGTCATAAGAAAAGTTTTTCTTTCCACCGTTTTCGATAAAATCAA
1 A--AGAAA---A-GC--T------------------TTTCTTTCCACCGTTTTTGATAGAATCAA
* * * * *
1639011 AGTTTATCTCTTAAAAATGACAAACATGAATACTCATAGTAATCCTCGTTCTTTTCAGGATTAGG
40 AGTTTGTCTCTTAAATACGACAAACATGAATACTCATACTAATCC-CGTTCTTTTCAGGATTAGA
* ** * *
1639076 CACCACAAACGCAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCACAGGAAAGGCT
104 CACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCT
* * *
1639141 TTTTTCCTACCAATTTTCGTAAAGTCTAAGTTCGTGACTCAAATGAGACAAACATGGATTCTAGT
169 TTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGT
* **
1639206 AATGATCTTTATTC-TTTTGGTCATTAGGCACTATAAACACATTCTCCTCAACAGGATAAATGAT
234 AATGATCTTTATTCATTTT-GTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGAT
* *
1639270 ATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
298 ATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTT-ACTTATTTTCCTTAAAATCAAAGTTCAT
* * * * * *
1639335 CCTTTAAATA-AGGCAAGCCTCGATTCTCGTAACAGTCCCCATT-CTTTTCATGATTTGG-ATGC
362 CCTTTAAATATA-GCAAGCATCGATTCTCATAATAGTCTCCATTCCTTTT-AAGATTGGGAAT-C
* * * * * * * *
1639397 CAAAACACATTCCCCTCATCAGGGTAAATGACATTGATGCTTTGG-GGCTAC
424 AAAAACACATTCCCTTCATTAGGATACATGA-AATGATGCTTTGGTGTC-AT
* *
1639448 AAGAAAAGCTTTTCTTTTCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACA
1 AAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACA
* *
1639513 TGAATACTCATACTAATCCCCGTTCTTTTCAAGATTAGGCACCATAAACATAGT-TTCTCATTCA
66 TGAATACTCATACTAAT-CCCGTTCTTTTCAGGATTAGACACCATAAACATAGTCTTCTCATT-A
* ** * * *
1639577 -AATACATCATAAAGATGCTTTGGTTTTGCAAGAAAGGCTTTTCTCCCACCAATTTTTGAAAAGT
129 GGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGT
* * * ** *
1639641 CTATGTTCGTGCCTCAAATGAGACAAACATAGATTCTAGTAAAGATCTTCCTTAATTTTGTGATT
194 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGATT
* * * * *
1639706 AGGTACTATAAACACATTCTGCTCATTAGGATAAATGATATTGATGATTTTATTTTGCTTGGAAA
259 AGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAA
* * * *
1639771 TCTTTTATTTATCCTATTTTTCTTAAAATCAAAGTTCATCTTTTAAATA-AGGCAAGCATCGATT
324 TCTTTTCTTTA-CTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATATA-GCAAGCATCGATT
* * * * * * *
1639835 CTCATAACT-GTCTCCATTCGTTTCAAGATTGAGAAGCAAAAACACATTGCTTTCATTAGGATGC
387 CTCATAA-TAGTCTCCATTCCTTTTAAGATTGGGAATCAAAAACACATTCCCTTCATTAGGATAC
* *
1639899 ATGACATTGATGCTTTGGTGTCGT
451 ATGA-AATGATGCTTTGGTGTCAT
* * *
1639923 AAGAAAAGCTTTTCTTTCTACCGTTTTTGACAGAATCAAAGTTTGTCTATTAAATACGACAAACA
1 AAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACA
** * * * * * ** * *
1639988 AAAATAC-CGATAATAATCCCCATTTTTTTTAGGATTTGGTACCATAAACGTAGTCTTCTTATTA
66 TGAATACTC-ATACTAAT-CCCGTTCTTTTCAGGATTAGACACCATAAACATAGTCTTCTCATTA
* * * * *
1640052 GGATACA-CGACT-TTGATGCTTTCGTTTCGCATGAAAGGCTTTCTTCCCCCCAATTTTTATAAA
129 GGATACATC-A-TATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAA
* * *
1640115 GTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTC-TTTTGGTC
192 GTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTT-GTG
* *
1640179 ATTAGGCACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTT-TTTTGTATGA
256 ATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGA
* * * *
1640243 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCATTTAAATA-AGGCAAGCCTCG
321 AAATCTTTTCTTT-ACTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATATA-GCAAGCATCG
* ** * * * *
1640307 ATTCTCGTAGCAATCTCCATT-CTTTTCATGATTTGG-ATGCCAAAACACATTCCCTTCATTAGG
384 ATTCTCATAATAGTCTCCATTCCTTTT-AAGATTGGGAAT-CAAAAACACATTCCCTTCATTA-G
* * * ***
1640370 GA-AAATGACATTGATGCTTTGGGGTTGC
446 GATACATGA-AATGATGCTTTGGTGTCAT
* ** * *
1640398 AAGAAAAGCTTATCTTTTTACCGTTTTTGATAGAATCAAAGTTTGTTTCTTAAATATGACA
1 AAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACA
1640459 CATTAGGATG
Statistics
Matches: 2658, Mismatches: 576, Indels: 456
0.72 0.16 0.12
Matches are distributed among these distances:
466 2 0.00
467 5 0.00
468 2 0.00
469 5 0.00
470 8 0.00
471 140 0.05
472 125 0.05
473 69 0.03
474 98 0.04
475 842 0.32
476 720 0.27
477 148 0.06
478 3 0.00
479 6 0.00
480 3 0.00
482 1 0.00
483 4 0.00
485 1 0.00
486 6 0.00
487 10 0.00
488 1 0.00
489 4 0.00
491 4 0.00
494 6 0.00
495 8 0.00
496 7 0.00
497 4 0.00
498 6 0.00
499 4 0.00
500 16 0.01
501 14 0.01
502 23 0.01
503 3 0.00
504 12 0.00
505 4 0.00
506 8 0.00
507 5 0.00
508 10 0.00
509 13 0.00
510 2 0.00
511 4 0.00
512 1 0.00
513 1 0.00
514 1 0.00
515 1 0.00
516 5 0.00
517 3 0.00
518 13 0.00
519 10 0.00
520 6 0.00
521 8 0.00
522 4 0.00
523 12 0.00
524 3 0.00
525 22 0.01
526 15 0.01
527 15 0.01
528 4 0.00
529 6 0.00
530 4 0.00
531 7 0.00
532 8 0.00
533 6 0.00
536 4 0.00
538 4 0.00
539 1 0.00
540 10 0.00
541 6 0.00
542 1 0.00
544 4 0.00
545 1 0.00
547 4 0.00
548 6 0.00
549 1 0.00
550 12 0.00
551 47 0.02
552 7 0.00
553 3 0.00
554 1 0.00
555 6 0.00
556 9 0.00
557 6 0.00
558 5 0.00
559 2 0.00
560 5 0.00
561 2 0.00
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.37
Consensus pattern (473 bp):
AAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACA
TGAATACTCATACTAATCCCGTTCTTTTCAGGATTAGACACCATAAACATAGTCTTCTCATTAGG
ATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCT
AAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGATTAG
GCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATC
TTTTCTTTACTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATATAGCAAGCATCGATTCTCA
TAATAGTCTCCATTCCTTTTAAGATTGGGAATCAAAAACACATTCCCTTCATTAGGATACATGAA
ATGATGCTTTGGTGTCAT
Found at i:1638552 original size:96 final size:96
Alignment explanation
Indices: 1638397--1638579 Score: 267
Period size: 96 Copynumber: 1.9 Consensus size: 96
1638387 ATTAGGGAAA
* ** * *
1638397 ATGACATTGATGCTTTGGGGTTGCAAGAAAAGCTTTTCTTTTTACCGTTTTTGATAGAATCAAAG
1 ATGACATTGATGCTTTGGGGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTGTGACAGAATCAAAG
* *
1638462 TTTGTTTCTTAAATATGACACATTAGGATGC
66 TTTGTCTCTTAAATACGACACATTAGGATGC
* * * *
1638493 ATGATATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCCATCGTTTGTGACAGAATCAAAG
1 ATGACATTGATGCTTTGGGGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTGTGACAGAATCAAAG
1638558 TTTGTCTCTTAAATACGACACA
66 TTTGTCTCTTAAATACGACACA
1638580 CAAGAATACT
Statistics
Matches: 76, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
96 76 1.00
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.38
Consensus pattern (96 bp):
ATGACATTGATGCTTTGGGGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTGTGACAGAATCAAAG
TTTGTCTCTTAAATACGACACATTAGGATGC
Found at i:1640529 original size:96 final size:96
Alignment explanation
Indices: 1640374--1640556 Score: 258
Period size: 96 Copynumber: 1.9 Consensus size: 96
1640364 ATTAGGGAAA
* ** * *
1640374 ATGACATTGATGCTTTGGGGTTGCAAGAAAAGCTTATCTTTTTACCGTTTTTGATAGAATCAAAG
1 ATGACATTGATGCTTTGGGGTCGCAAGAAAAGCTTATCTTTCCACCGTTTGTGACAGAATCAAAG
* *
1640439 TTTGTTTCTTAAATATGACACATTAGGATGC
66 TTTGTCTCTTAAATACGACACATTAGGATGC
* * * * *
1640470 ATGATATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCCATCGTTTGTGACAGAATCAAAG
1 ATGACATTGATGCTTTGGGGTCGCAAGAAAAGCTTATCTTTCCACCGTTTGTGACAGAATCAAAG
1640535 TTTGTCTCTTAAATACGACACA
66 TTTGTCTCTTAAATACGACACA
1640557 CAAGAATACT
Statistics
Matches: 75, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
96 75 1.00
ACGTcount: A:0.29, C:0.14, G:0.19, T:0.38
Consensus pattern (96 bp):
ATGACATTGATGCTTTGGGGTCGCAAGAAAAGCTTATCTTTCCACCGTTTGTGACAGAATCAAAG
TTTGTCTCTTAAATACGACACATTAGGATGC
Found at i:1641026 original size:160 final size:161
Alignment explanation
Indices: 1640844--1641160 Score: 347
Period size: 160 Copynumber: 2.0 Consensus size: 161
1640834 TTTTCCTTAA
* * * * * * * *
1640844 AATCAAAGTTCATCTTTTAAATATGGCAATCATCG-ATTCTCGTAATAGTCTCCATTCTTTTTAA
1 AATCAAAGTTCATCTCTTAAATACGACAAACAT-GAATACTCATAATAATCCCCATTCTTTTTAA
* * * *
1640908 GATTGGGA-AGCAAAAACACATTC-CCTTCATTAGGATACATGACATTGATGCTTTGGTGTCATA
65 GATT-AGACAGCAAAAACACAGTCTCCTT-ATTAGGATACATCACATTGATGCTTTGGTGTCACA
1640971 AGAAAAGCTTTTCTTTTC-CACC-ATTTTTGATAG
128 AGAAAAGCTTTT-TTTTCACACCAATTTTTGATAG
** * *
1641004 AATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATACTAATCCCCATTCTTTTTAGG
1 AATCAAAGTTCATCTCTTAAATACGACAAACATGAATACTCATAATAATCCCCATTCTTTTTAAG
** * * * * *
1641069 ATTAGACAGCGTAAACATAGTCTTCTTATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGA
66 ATTAGACAGCAAAAACACAGTCTCCTTATTAGGATACATCACATTGATGCTTTGGTGTCACAAGA
*
1641134 AAGGCTTTTTTTTCACACCAATTTTTG
131 AAAGCTTTTTTTTCACACCAATTTTTG
1641161 TAAAGTCGAA
Statistics
Matches: 128, Mismatches: 24, Indels: 9
0.80 0.15 0.06
Matches are distributed among these distances:
159 8 0.06
160 110 0.86
161 10 0.08
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (161 bp):
AATCAAAGTTCATCTCTTAAATACGACAAACATGAATACTCATAATAATCCCCATTCTTTTTAAG
ATTAGACAGCAAAAACACAGTCTCCTTATTAGGATACATCACATTGATGCTTTGGTGTCACAAGA
AAAGCTTTTTTTTCACACCAATTTTTGATAG
Found at i:1642967 original size:42 final size:42
Alignment explanation
Indices: 1642906--1643037 Score: 176
Period size: 42 Copynumber: 3.1 Consensus size: 42
1642896 TAGCCCTCAA
* *
1642906 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAAG
* *
1642948 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACATG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAAG
* * * *
1642990 AGAGATAATAGAGAGAGGATGGATGACAGGAGGAGGAGAGAAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGA-GAGACAAG
1643033 A-AGAT
1 AGAGAT
1643038 GGAAGAGTGA
Statistics
Matches: 79, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
42 72 0.91
43 7 0.09
ACGTcount: A:0.45, C:0.02, G:0.43, T:0.10
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAAG
Found at i:1651625 original size:159 final size:157
Alignment explanation
Indices: 1651462--1663082 Score: 873
Period size: 159 Copynumber: 73.1 Consensus size: 157
1651452 TGGTGTCATA
* *
1651462 AGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTGTCTCTCAAATACGACAAACAT
1 AGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTCGTC-CTCAAATAAGACAAACAT
* *
1651527 GAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCACAAATATAGTCTTCTCTTTAGG
65 GAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCACAAACATAGTCTTCTCATTAGG
* *
1651592 ATACATCATAATGATGCTTTGGTTTTGC
130 ATACAACATATTGATGCTTTGGTTTTGC
* * * * *
1651620 GAGAAAGGC-TTT-TTTCCAACCAATTTTTG-TAAAGTCTAAGTTCGTGCCTCAAATAAGACAAA
1 -AGAAAAGCTTTTCTTTCC-ACC-GTTTTCGATAAAATCAAAGTTCGT-CCTCAAATAAGACAAA
* * * **** * * * * * *
1651682 CATGGATTCT-AGTA-AAGATCTTTGTTCATTTTC-TGATTAGGTACTACAAACACAATCTGCTC
62 CATGAATACTCA-TACTA-ATCCCCATTC-TTTTCAAGATTAGGCACCACAAACATAGTCTTCTC
* **
1651744 ATTAGGATA-AACGATATTGATGATTTTATTTTGC
124 ATTAGGATACAAC-ATATTGATGCTTTGGTTTTGC
* * ** * * * * * *
1651778 ATGGAAATCTTTTCTTTACC-CTATTTTTC-TTAAAATCAAACTTCATCCTTTAAATAAGGCAAG
1 A-GAAAAGCTTTTCTTT-CCAC-CGTTTTCGATAAAATCAAAGTTCGTCC-TCAAATAAGACAAA
* * * ** * * * *
1651841 CATCAATTCTCATAAC-AGTTTCCA-TCTTTTCCAAGATT-GAGAAGCAAAAACATATTCCTT-T
62 CATGAATACTCAT-ACTAATCCCCATTCTTTT-CAAGATTAG-GCACCACAAACATAGT-CTTCT
* * * * *
1651902 CATTAGGATGCAAGATATTGATGCTTTGGTGTCGTA
123 CATTAGGATACAACATATTGATGCTTTGGTTTTG-C
* * * * * *
1651938 AGAAAAGCTTTTCTTTCCACCGTTTTTGACAGAATCAAAGTTTGTCTCTTAAATACGACAAACAT
1 AGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTCGTC-CTCAAATAAGACAAACAT
* * * * * * *
1652003 GAATACTCAAACTAATCCCCGTTCCTTTCAGGATTAGGCACCA-TAACGTAGTCTCCTCATTAGG
65 GAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCACAAACATAGTCTTCTCATTAGG
* *
1652067 ATACATCATATTGACGCTTTGGTTTTGC
130 ATACAACATATTGATGCTTTGGTTTTGC
* * ** * * * * * *
1652095 AGGAAAGGC-TTT-TTTCCTACCAATTTT-TTTGAAGTCTAAGTTCATGACTCAAATGAGACAAA
1 A-GAAAAGCTTTTCTTTCC-ACC-GTTTTCGATAAAATCAAAGTTCGT-CCTCAAATAAGACAAA
* * * * *** * * * * * *
1652157 CATGGATTCT-AGTAATGATATTCATTCTTTGGTC---ATTAGACACTATAAACACATTCTCCTC
62 CATGAATACTCA-TACTAATCCCCATTCTTT--TCAAGATTAGGCACCACAAACATAGTCTTCTC
* * * ** *
1652218 AATAGGATA-AATGATATTGATGATTTTCTTTTAC
124 ATTAGGATACAA-CATATTGATGCTTTGGTTTTGC
* * * *** ** * * * * * *
1652252 AATGGAAATCTTTTCTTAGCC-TTATTTTCCTTAAAATCAAAGTTCATCTTTTAAATATGGCAAG
1 -A-GAAAAGCTTTTCTT-TCCACCGTTTTCGATAAAATCAAAGTTCGTC-CTCAAATAAGACAAA
* * * * * * * * * * * * *
1652316 CATCG-ATTCTCGTAATAGTCTCCATTCTTTTTAAGATTGGGAAGCAAAAACACATTC-CCTTCA
62 CAT-GAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCACAAACATAGTCTTC-TCA
** * * * *
1652379 TTAGGATACATGACATTGATGCTTTGGTGTCGTA
125 TTAGGATACAACATATTGATGCTTTGGTTTTG-C
* * * ** * *
1652413 AGAAAAGCTTTTCTTTTCCACCATTTTTGATAGAATCAAAGTTTATCTCTTAAATACGACAAACA
1 AGAAAAGCTTTTC-TTTCCACCGTTTTCGATAAAATCAAAGTTCGTC-CTCAAATAAGACAAACA
* * * ** ** * *
1652478 TGAATACTCATACTAATCCCCGTTCTTTTTAGGATTAGATAGCGTC-AACATAGTCTTCTTACTA
64 TGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCA-CCACAAACATAGTCTTCTCATTA
* *
1652542 GGATACATCATATTGATGCTTTGGTTTCGC
128 GGATACAACATATTGATGCTTTGGTTTTGC
* * * * * * * * * *
1652572 AAGAAAGGCTTTTTTTTCACACCAATTTTTG-TAAAGTCTAAGTTCGTGCCTCTAATGAGATACA
1 -AGAAAAGCTTTTCTTTC-CACC-GTTTTCGATAAAATCAAAGTTCGT-CCTCAAATAAGACAAA
* * * * **** ** * * * ** * *
1652636 TATGGATTCT-AGTA-AAGATCTTTTTTCATTTT-TTGAATAGGTACTATGAACA-ATTCTCCTC
62 CATGAATACTCA-TACTA-ATCCCCATTC-TTTTCAAGATTAGGCACCACAAACATAGTCTTCTC
* * **
1652697 -TTCAGGATA-AATGATATTGATGATTTTATTTTGC
124 ATT-AGGATACAA-CATATTGATGCTTTGGTTTTGC
* * * * *** ** * * * *
1652731 ATGGATATCTTTTCTTT-AAGTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAACAA-ACCAAG
1 A-GAAAAGCTTTTCTTTCCA-CCGTTTTCGATAAAATCAAAGTTCGTCC-TCAAATAAGA-CAAA
* * * ** * * * * ***
1652794 CTTCG-ATTCTCATAATAGCCCCCATTCCTTTT-AAGATTGGGAAGCGAACACACATTCACTT-T
62 CAT-GAATACTCATACTAATCCCCATT-CTTTTCAAGATTAGGCA-C-CACAAACATAGTCTTCT
* ** * * * *
1652856 -TTTAGGATACATGAAATTGATGCTTTGATGTTGTA
123 CATTAGGATACAACATATTGATGCTTTGGTTTTG-C
* ** *
1652891 AGAAAAGCTTTTCTTTCCACCGTTTTTGATAAAATCAAAGTTTATCTCTTAAA-AACGACAAACA
1 AGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTCGTC-CTCAAATAA-GACAAACA
* ***
1652955 TGAATACTCATACTAATCCTCATTCTTTTCAAGATTAGGCACCACAAATGCAGTCTTCTCATTAG
64 TGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCACAAACATAGTCTTCTCATTAG
* *
1653020 GATACATCATATTGATGCTTTGGTTTCGC
129 GATACAACATATTGATGCTTTGGTTTTGC
* * * * * * * * *
1653049 AGGAAAGGC-TTT-TTTCCTACCAATTTTTG-TAAAGTCTAAGTTTGTGACTTAAATGAGACAAA
1 A-GAAAAGCTTTTCTTTCC-ACC-GTTTTCGATAAAATCAAAGTTCGT-CCTCAAATAAGACAAA
* * * * *** * *** * * * * * *
1653111 CATGGATTCT-AGTAATGATCTTTATTCATTTGGTGATTTGGCACTATAAACACATTCTCCTCAT
62 CATGAATACTCA-TACTAATCCCCATTCTTTTCAAGATTAGGCACCACAAACATAGTCTTCTCAT
* * **
1653175 TAGGAT-GAACGATATTGATGATTTTCTTTTGC
126 TAGGATACAAC-ATATTGATGCTTTGGTTTTGC
* * * * ** ** * * * * *
1653207 ATGGAAATCTTCTCTTAGCC-CTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATATGGCAAGC
1 A-GAAAAGCTTTTCTT-TCCACCGTTTTCGATAAAATCAAAGTTCGTCC-TCAAATAAGACAAAC
* * * * * ** * * * *
1653271 ATCG-ATTCTCTTAATAGTCTCCATTCTTTTCAAGATT-GAAAAGCAAAAACACATTCCTT-TCA
63 AT-GAATACTCATACTAATCCCCATTCTTTTCAAGATTAG-GCACCACAAACATAGT-CTTCTCA
* ** * * * *
1653333 TTAGGATGCATGACATTGATGCTTTGGTGTCGTA
125 TTAGGATACAACATATTGATGCTTTGGTTTTG-C
* * * * * *
1653367 AGAAAAGCTTTTCTTTCCACCGTTTTTGACAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAC
1 AGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTCGTC-CTCAAATAAGACAAACAT
** * * * * * *
1653432 GAGCACTTATACTAATCCCCATTCATTTCAGGATTAGGCATCATAAACATAGTCTTCTTATTAGG
65 GAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCACAAACATAGTCTTCTCATTAGG
** * *
1653497 ATACATTATATTGAAGCTTTGGTTTCGC
130 ATACAACATATTGATGCTTTGGTTTTGC
* * * * * * * * * * * *
1653525 AAGAAAGGCTTTTTTTTCACCCCAATTTTTG-TGAAGTCTAAGTTCGTGCCTCTAATGAGATACA
1 -AGAAAAGCTTTTCTTTC-CACC-GTTTTCGATAAAATCAAAGTTCGT-CCTCAAATAAGACAAA
* * * * * *** **** * * * * * * *
1653589 TATGGATTCT-AGTAATGATATTCATTCTTTTGGTCATTAGACACTATAAACACATTCTCCTCAA
62 CATGAATACTCA-TACTAATCCCCATTCTTTTCAAGATTAGGCACCACAAACATAGTCTTCTCAT
* * ** *
1653653 TAGGATA-AATGATATTGATGATTTTCTTTTAC
126 TAGGATACAA-CATATTGATGCTTTGGTTTTGC
* * * *** ** * * * * * *
1653685 AATGGAAATCTTTTCTTAGCC-TTATTTTCCTTAAAATCAAAGTTCATCTTTTAAATATGGCAAG
1 -A-GAAAAGCTTTTCTT-TCCACCGTTTTCGATAAAATCAAAGTTCGTC-CTCAAATAAGACAAA
* * * * * * * * * * * * *
1653749 CATCG-ATTCTCGTAATAGTCTCCATTCTTTTTAAGATTGGGAAGCAAAAACACATTC-CCTTCA
62 CAT-GAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCACAAACATAGTCTTC-TCA
** * * * *
1653812 TTAGGATACATGACATTGATGCTTTGGTGTCGTA
125 TTAGGATACAACATATTGATGCTTTGGTTTTG-C
* * * * * *
1653846 AGAAAAGCTTTTCTTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACA
1 AGAAAAGCTTTTC-TTTCCACCGTTTTCGATAAAATCAAAGTTCGTC-CTCAAATAAGACAAACA
* * * * ** ** * *
1653911 TGAATACTCATACTAATCCTCGTTCTTTTTAGGATTAGATAGCGTC-AACATAGTCTTCTTACTA
64 TGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCA-CCACAAACATAGTCTTCTCATTA
* *
1653975 GGATACATCATATTGATGCTTTGGTTTCGC
128 GGATACAACATATTGATGCTTTGGTTTTGC
* * * * * * * * * *
1654005 AAGAAAGGCTTTTTTTTCACACCAATTTTTG-TAAAGTCTAAGTTCGTGCCTCTAATGAGATACA
1 -AGAAAAGCTTTTCTTTC-CACC-GTTTTCGATAAAATCAAAGTTCGT-CCTCAAATAAGACAAA
* * * * **** ** * * * ** * *
1654069 TATGGATTCT-AGTA-AAGATCTTTTTTCATTTT-TTGAATAGGTACTATGAACA-ATTCTCCTC
62 CATGAATACTCA-TACTA-ATCCCCATTC-TTTTCAAGATTAGGCACCACAAACATAGTCTTCTC
* * **
1654130 -TTCAGGATA-AATGATATTGATGATTTTATTTTGC
124 ATT-AGGATACAA-CATATTGATGCTTTGGTTTTGC
* * * * *** ** * * * *
1654164 ATGGATATCTTTTCTTT-AAGTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAACAA-ACCAAG
1 A-GAAAAGCTTTTCTTTCCA-CCGTTTTCGATAAAATCAAAGTTCGTCC-TCAAATAAGA-CAAA
* * * ** * * * * ***
1654227 CTTCG-ATTCTCATAATAGCCCCCATTCCTTTT-AAGATTGGGAAGCGAACACACATTCACTT-T
62 CAT-GAATACTCATACTAATCCCCATT-CTTTTCAAGATTAGGCA-C-CACAAACATAGTCTTCT
* ** * * *
1654289 -TTTAGGATACATGAAATTGATGCTTTGGTGTTGTA
123 CATTAGGATACAACATATTGATGCTTTGGTTTTG-C
* ** *
1654324 AGAAAAGCTTTTCTTTCCACCGTTTTTGATAAAATCAAAGTTTATCTCTTAAA-AACGACAAACA
1 AGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTCGTC-CTCAAATAA-GACAAACA
* * ***
1654388 TGAATACTCATACTAATCCTCATTCTTTTCAGGATTAGGCACCACAAATGCAGTCTTCTCATTAG
64 TGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCACAAACATAGTCTTCTCATTAG
* *
1654453 GATACATCATATTGATGCTTTGGTTTCGC
129 GATACAACATATTGATGCTTTGGTTTTGC
* * * * * * * * *
1654482 AGGAAACGC-TTT-TTTCCTACCAATTTTTG-TAAAGTCTAAGTTTGTGACTTAAATGAGACAAA
1 A-GAAAAGCTTTTCTTTCC-ACC-GTTTTCGATAAAATCAAAGTTCGT-CCTCAAATAAGACAAA
* * * * *** * *** * * * * * *
1654544 CATGGATTCT-AGTAATGATCTTTATTCATTTGGTGATTTGGCACTATAAACACATTCTCCTCAT
62 CATGAATACTCA-TACTAATCCCCATTCTTTTCAAGATTAGGCACCACAAACATAGTCTTCTCAT
* * **
1654608 TAGGAT-GAACGATATTGATGATTTTCTTTTGC
126 TAGGATACAAC-ATATTGATGCTTTGGTTTTGC
* * * * ** ** * * * * *
1654640 ATGGAAATCTTCTCTTAGCC-CTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATATGGCAAGC
1 A-GAAAAGCTTTTCTT-TCCACCGTTTTCGATAAAATCAAAGTTCGTCC-TCAAATAAGACAAAC
* * * * * ** * * * *
1654704 ATTG-ATTCTCTTAATAGTCTCCATTCTTTTCAAGATT-GAAAAGCAAAAACACATTCCTT-TCA
63 A-TGAATACTCATACTAATCCCCATTCTTTTCAAGATTAG-GCACCACAAACATAGT-CTTCTCA
* ** * * * *
1654766 TTAGGATGCATGACATTGATGCTTTGGTGTCGTA
125 TTAGGATACAACATATTGATGCTTTGGTTTTG-C
* * * * * *
1654800 AGAAAAGCTTTTCTTTCCACCGTTTTTGACAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAC
1 AGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTCGTC-CTCAAATAAGACAAACAT
** * * * * * *
1654865 GAGCACTTATACTAATCCCCATTCATTTCAGGATTAGGCATCATAAACATAGTCTTCTTATTAGG
65 GAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCACAAACATAGTCTTCTCATTAGG
** * *
1654930 ATACATTATATTGAAGCTTTGGTTTCGC
130 ATACAACATATTGATGCTTTGGTTTTGC
* * * * * * * * * * * *
1654958 AAGAAAGGCTTTTTTTTCACCCCAATTTTTG-TGAAGTCTAAGTTCGTGCCTCTAATGAGATACA
1 -AGAAAAGCTTTTCTTTC-CACC-GTTTTCGATAAAATCAAAGTTCGT-CCTCAAATAAGACAAA
* * * * * *** **** * * * * * * *
1655022 TATGGATTCT-AGTAATGATATTCATTCTTTTGGTCATTAGACACTATAAACACATTCTCCTCAA
62 CATGAATACTCA-TACTAATCCCCATTCTTTTCAAGATTAGGCACCACAAACATAGTCTTCTCAT
* * ** *
1655086 TAGGATA-AATGATATTGATGATTTTCTTTTAC
126 TAGGATACAA-CATATTGATGCTTTGGTTTTGC
* * * *** ** * * * * * *
1655118 AATGGAAATCTTTTCTTAGCC-TTATTTTCCTTAAAATCAAAGTTCATCTTTTAAATATGGCAAG
1 -A-GAAAAGCTTTTCTT-TCCACCGTTTTCGATAAAATCAAAGTTCGTC-CTCAAATAAGACAAA
* * * * * * * * * * * * *
1655182 CATCG-ATTCTCGTAATAGTCTCCATTCTTTTTAAGATTGGGAAGCAAAAACACATTC-CCTTCA
62 CAT-GAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCACAAACATAGTCTTC-TCA
** * * * *
1655245 TTAGGATACATGACATTGATGCTTTGGTGTCGTA
125 TTAGGATACAACATATTGATGCTTTGGTTTTG-C
* * * * * *
1655279 AGAAAAGCTTTTCTTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACA
1 AGAAAAGCTTTTC-TTTCCACCGTTTTCGATAAAATCAAAGTTCGTC-CTCAAATAAGACAAACA
* * * ** ** * *
1655344 TGAATACTCATACTAATCCCCGTTCTTTTTAGGATTAGATAGCGTC-AACATAGTCTTCTTACTA
64 TGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCA-CCACAAACATAGTCTTCTCATTA
* *
1655408 GGATACATCATATTGATGCTTTGGTTTCGC
128 GGATACAACATATTGATGCTTTGGTTTTGC
* * * * * * * * * *
1655438 AAGAAAGGCTTTTTTTTCACACCAATTTTTG-TAAAGTCTAAGTTCGTGCCTCTAATGAGATACA
1 -AGAAAAGCTTTTCTTTC-CACC-GTTTTCGATAAAATCAAAGTTCGT-CCTCAAATAAGACAAA
* * * * **** ** * * * ** * *
1655502 TATGGATTCT-AGTA-AAGATCTTTTTTCATTTT-TTGAATAGGTACTATGAACA-ATTCTCCTC
62 CATGAATACTCA-TACTA-ATCCCCATTC-TTTTCAAGATTAGGCACCACAAACATAGTCTTCTC
* * **
1655563 -TTCAGGATA-AATGATATTGATGATTTTATTTTGC
124 ATT-AGGATACAA-CATATTGATGCTTTGGTTTTGC
* * * * *** ** * * * *
1655597 ATGGATATCTTTTCTTT-AAGTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAACAA-ACCAAG
1 A-GAAAAGCTTTTCTTTCCA-CCGTTTTCGATAAAATCAAAGTTCGTCC-TCAAATAAGA-CAAA
* * * ** * * * * ***
1655660 CTTCG-ATTCTCATAATAGCCCCCATTCCTTTT-AAGATTGGGAAGCGAACACACATTCACTT-T
62 CAT-GAATACTCATACTAATCCCCATT-CTTTTCAAGATTAGGCA-C-CACAAACATAGTCTTCT
* ** * * *
1655722 -TTTAGGATACATGAAATTGATGCTTTGGTGTTGTA
123 CATTAGGATACAACATATTGATGCTTTGGTTTTG-C
* ** *
1655757 AGAAAAGCTTTTCTTTCCACCGTTTTTGATAAAATCAAAGTTTATCTCTTAAA-AACGACAAACA
1 AGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTCGTC-CTCAAATAA-GACAAACA
* * ***
1655821 TGAATACTCATACTAATCCTCATTCTTTTCAGGATTAGGCACCACAAATGCAGTCTTCTCATTAG
64 TGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCACAAACATAGTCTTCTCATTAG
* *
1655886 GATACATCATATTGATGCTTTGGTTTCGC
129 GATACAACATATTGATGCTTTGGTTTTGC
* * * * * * * * *
1655915 AGGAAACGC-TTT-TTTCCTACCAATTTTTG-TAAAGTCTAAGTTTGTGACTTAAATGAGACAAA
1 A-GAAAAGCTTTTCTTTCC-ACC-GTTTTCGATAAAATCAAAGTTCGT-CCTCAAATAAGACAAA
* * * * *** * *** * * * * * *
1655977 CATGGATTCT-AGTAATGATCTTTATTCATTTGGTGATTTGGCACTATAAACACATTCTCCTCAT
62 CATGAATACTCA-TACTAATCCCCATTCTTTTCAAGATTAGGCACCACAAACATAGTCTTCTCAT
* * **
1656041 TAGGAT-GAACGATATTGATGATTTTCTTTTGC
126 TAGGATACAAC-ATATTGATGCTTTGGTTTTGC
* * * * ** ** * * * * *
1656073 ATGGAAATCTTCTCTTAGCC-CTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATATGGCAAGC
1 A-GAAAAGCTTTTCTT-TCCACCGTTTTCGATAAAATCAAAGTTCGTCC-TCAAATAAGACAAAC
* * * * * ** * * * *
1656137 ATTG-ATTCTCTTAATAGTCTCCATTCTTTTCAAGATT-GAAAAGCAAAAACACATTCCTT-TCA
63 A-TGAATACTCATACTAATCCCCATTCTTTTCAAGATTAG-GCACCACAAACATAGT-CTTCTCA
* ** * * * *
1656199 TTAGGATGCATGACATTGATGCTTTGGTGTCGTA
125 TTAGGATACAACATATTGATGCTTTGGTTTTG-C
* * * * * *
1656233 AGAAAAGCTTTTCTTTCCACCGTTTTTGACAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAC
1 AGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTCGTC-CTCAAATAAGACAAACAT
** * * * * * * *
1656298 GAGCACTTATTCTAATCCCCATTCATTTCAGGATTAGGCATCATAAACATAGTCTTCTTATTAGG
65 GAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCACAAACATAGTCTTCTCATTAGG
** * *
1656363 ATACATTATATTGAAGCTTTGGTTTCGC
130 ATACAACATATTGATGCTTTGGTTTTGC
* * * * * * * * * * * *
1656391 AAGAAAGGCTTTTTTTTCACCCCAATTTTTG-TGAAGTCTAAGTTCGTGCCTCTAATGAGATACA
1 -AGAAAAGCTTTTCTTTC-CACC-GTTTTCGATAAAATCAAAGTTCGT-CCTCAAATAAGACAAA
* * * * * *** **** * * * * * * *
1656455 TATGGATTCT-AGTAATGATATTCATTCTTTTGGTCATTAGACACTATAAACACATTCTCCTCAA
62 CATGAATACTCA-TACTAATCCCCATTCTTTTCAAGATTAGGCACCACAAACATAGTCTTCTCAT
* * ** *
1656519 TAGGATA-AATGATATTGATGATTTTCTTTTAC
126 TAGGATACAA-CATATTGATGCTTTGGTTTTGC
* * * *** ** * * * * * *
1656551 AATGGAAATCTTTTCTTAGCC-TTATTTTCCTTAAAATCAAAGTTCATCTTTTAAATATGGCAAG
1 -A-GAAAAGCTTTTCTT-TCCACCGTTTTCGATAAAATCAAAGTTCGTC-CTCAAATAAGACAAA
* * * * * * * * * * * * *
1656615 CATCG-ATTCTCGTAATAGTCTCCATTCTTTTTAAGATTGGGAAGCAAAAACACATTC-CCTTCA
62 CAT-GAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCACAAACATAGTCTTC-TCA
** * * * *
1656678 TTAGGATACATGACATTGATGCTTTGGTGTCGTA
125 TTAGGATACAACATATTGATGCTTTGGTTTTG-C
* * * * * *
1656712 AGAAAAGCTTTTCTTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACA
1 AGAAAAGCTTTTC-TTTCCACCGTTTTCGATAAAATCAAAGTTCGTC-CTCAAATAAGACAAACA
* * * ** ** * *
1656777 TGAATACTCATACTAATCCCCGTTCTTTTTAGGATTAGATAGCGTC-AACATAGTCTTCTTACTA
64 TGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCA-CCACAAACATAGTCTTCTCATTA
* *
1656841 GGATACATCATATTGATGCTTTGGTTTCGC
128 GGATACAACATATTGATGCTTTGGTTTTGC
* * * * * * * * * *
1656871 AAGAAAGGCTTTTTTTTCACACCAATTTTTG-TAAAGTCTAAGTTCGTGCCTCTAATGAGATACA
1 -AGAAAAGCTTTTCTTTC-CACC-GTTTTCGATAAAATCAAAGTTCGT-CCTCAAATAAGACAAA
* * * * **** ** * * * ** * *
1656935 TATGGATTCT-AGTA-AAGATCTTTTTTCATTTT-TTGAATAGGTACTATGAACA-ATTCTCCTC
62 CATGAATACTCA-TACTA-ATCCCCATTC-TTTTCAAGATTAGGCACCACAAACATAGTCTTCTC
* * **
1656996 -TTCAGGATA-AATGATATTGATGATTTTATTTTGC
124 ATT-AGGATACAA-CATATTGATGCTTTGGTTTTGC
* * * * *** ** * * * *
1657030 ATGGATATCTTTTCTTT-AAGTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAACAA-ACCAAG
1 A-GAAAAGCTTTTCTTTCCA-CCGTTTTCGATAAAATCAAAGTTCGTCC-TCAAATAAGA-CAAA
* * * ** * * * * ***
1657093 CTTCG-ATTCTCATAATAGCCCCCATTCCTTTT-AAGATTGGGAAGCGAACACACATTCACTT-T
62 CAT-GAATACTCATACTAATCCCCATT-CTTTTCAAGATTAGGCA-C-CACAAACATAGTCTTCT
* ** * * *
1657155 -TTTAGGATACATGAAATTGATGCTTTGGTGTTGTA
123 CATTAGGATACAACATATTGATGCTTTGGTTTTG-C
* ** *
1657190 AGAAAAGCTTTTCTTTCCACCGTTTTTGATAAAATCAAAGTTTATCTCTTAAA-AACGACAAACA
1 AGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTCGTC-CTCAAATAA-GACAAACA
* * ***
1657254 TGAATACTCATACTAATCCTCATTCTTTTCAGGATTAGGCACCACAAATGCAGTCTTCTCATTAG
64 TGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCACAAACATAGTCTTCTCATTAG
* *
1657319 GATACATCATATTGATGCTTTGGTTTCGC
129 GATACAACATATTGATGCTTTGGTTTTGC
* * * * * * * * *
1657348 AGGAAACGC-TTT-TTTCCTACCAATTTTTG-TAAAGTCTAAGTTTGTGACTTAAATGAGACAAA
1 A-GAAAAGCTTTTCTTTCC-ACC-GTTTTCGATAAAATCAAAGTTCGT-CCTCAAATAAGACAAA
* * * * *** * *** * * * * * *
1657410 CATGGATTCT-AGTAATGATCTTTATTCATTTGGTGATTTGGCACTATAAACACATTCTCCTCAT
62 CATGAATACTCA-TACTAATCCCCATTCTTTTCAAGATTAGGCACCACAAACATAGTCTTCTCAT
* * **
1657474 TAGGAT-GAACGATATTGATGATTTTCTTTTGC
126 TAGGATACAAC-ATATTGATGCTTTGGTTTTGC
* * * * ** ** * * * * *
1657506 ATGGAAATCTTCTCTTAGCC-CTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATATGGCAAGC
1 A-GAAAAGCTTTTCTT-TCCACCGTTTTCGATAAAATCAAAGTTCGTCC-TCAAATAAGACAAAC
* * * * * ** * * * *
1657570 ATTG-ATTCTCTTAATAGTCTCCATTCTTTTCAAGATT-GAAAAGCAAAAACACATTCCTT-TCA
63 A-TGAATACTCATACTAATCCCCATTCTTTTCAAGATTAG-GCACCACAAACATAGT-CTTCTCA
* ** * * * *
1657632 TTAGGATGCATGACATTGATGCTTTGGTGTCGTA
125 TTAGGATACAACATATTGATGCTTTGGTTTTG-C
* * * * * *
1657666 AGAAAAGCTTTTCTTTCCACCGTTTTTGACAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAC
1 AGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTCGTC-CTCAAATAAGACAAACAT
** * * * * * *
1657731 GAGCACTTATACTAATCCCCATTCATTTCAGGATTAGGCATCATAAACATAGTCTTCTTATTAGG
65 GAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCACAAACATAGTCTTCTCATTAGG
** * *
1657796 ATACATTATATTGAAGCTTTGGTTTCGC
130 ATACAACATATTGATGCTTTGGTTTTGC
* * * * * * * * * * * *
1657824 AAGAAAGGCTTTTTTTTCACCCCAATTTTTG-TGAAGTCTAAGTTCGTGCCTCTAATGAGATACA
1 -AGAAAAGCTTTTCTTTC-CACC-GTTTTCGATAAAATCAAAGTTCGT-CCTCAAATAAGACAAA
* * * * * *** **** * * * * * * *
1657888 TATGGATTCT-AGTAATGATATTCATTCTTTTGGTCATTAGACACTATAAACACATTCTCCTCAA
62 CATGAATACTCA-TACTAATCCCCATTCTTTTCAAGATTAGGCACCACAAACATAGTCTTCTCAT
* * ** *
1657952 TAGGATA-AATGATATTGATGATTTTCTTTTAC
126 TAGGATACAA-CATATTGATGCTTTGGTTTTGC
* * * *** ** * * * * * *
1657984 AATGGAAATCTTTTCTTAGCC-TTATTTTCCTTAAAATCAAAGTTCATCTTTTAAATATGGCAAG
1 -A-GAAAAGCTTTTCTT-TCCACCGTTTTCGATAAAATCAAAGTTCGTC-CTCAAATAAGACAAA
* * * * * * * * * * * * *
1658048 CATCG-ATTCTCGTAATAGTCTCCATTCTTTTTAAGATTGGGAAGCAAAAACACATTC-CCTTCA
62 CAT-GAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCACAAACATAGTCTTC-TCA
** * * * *
1658111 TTAGGATACATGACATTGATGCTTTGGTGTCGTA
125 TTAGGATACAACATATTGATGCTTTGGTTTTG-C
* * * * * *
1658145 AGAAAAGCTTTTCTTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACA
1 AGAAAAGCTTTTC-TTTCCACCGTTTTCGATAAAATCAAAGTTCGTC-CTCAAATAAGACAAACA
* * * ** ** * *
1658210 TGAATACTCATACTAATCCCCGTTCTTTTTAGGATTAGATAGCGTC-AACATAGTCTTCTTACTA
64 TGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCA-CCACAAACATAGTCTTCTCATTA
* *
1658274 GGATACATCATATTGATGCTTTGGTTTCGC
128 GGATACAACATATTGATGCTTTGGTTTTGC
* * * * * * * * * *
1658304 AAGAAAGGCTTTTTTTTCACACCAATTTTTG-TAAAGTCTAAGTTCGTGCCTCTAATGAGATACA
1 -AGAAAAGCTTTTCTTTC-CACC-GTTTTCGATAAAATCAAAGTTCGT-CCTCAAATAAGACAAA
* * * * **** ** * * * ** * *
1658368 TATGGATTCT-AGTA-AAGATCTTTTTTCATTTT-TTGAATAGGTACTATGAACA-ATTCTCCTC
62 CATGAATACTCA-TACTA-ATCCCCATTC-TTTTCAAGATTAGGCACCACAAACATAGTCTTCTC
* * **
1658429 -TTCAGGATA-AATGATATTGATGATTTTATTTTGC
124 ATT-AGGATACAA-CATATTGATGCTTTGGTTTTGC
* * * * *** ** * * * *
1658463 ATGGATATCTTTTCTTT-AAGTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAACAA-ACCAAG
1 A-GAAAAGCTTTTCTTTCCA-CCGTTTTCGATAAAATCAAAGTTCGTCC-TCAAATAAGA-CAAA
* * * ** * * * * ***
1658526 CTTCG-ATTCTCATAATAGCCCCCATTCCTTTT-AAGATTGGGAAGCGAACACACATTCACTT-T
62 CAT-GAATACTCATACTAATCCCCATT-CTTTTCAAGATTAGGCA-C-CACAAACATAGTCTTCT
* ** * * *
1658588 -TTTAGGATACATGAAATTGATGCTTTGGTGTTGTA
123 CATTAGGATACAACATATTGATGCTTTGGTTTTG-C
* ** *
1658623 AGAAAAGCTTTTCTTTCCACCGTTTTTGATAAAATCAAAGTTTATCTCTTAAA-AACGACAAACA
1 AGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTCGTC-CTCAAATAA-GACAAACA
* * ***
1658687 TGAATACTCATACTAATCCTCATTCTTTTCAGGATTAGGCACCACAAATGCAGTCTTCTCATTAG
64 TGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCACAAACATAGTCTTCTCATTAG
* *
1658752 GATACATCATATTGATGCTTTGGTTTCGC
129 GATACAACATATTGATGCTTTGGTTTTGC
* * * * * * * * *
1658781 AGGAAACGC-TTT-TTTCCTACCAATTTTTG-TAAAGTCTAAGTTTGTGACTTAAATGAGACAAA
1 A-GAAAAGCTTTTCTTTCC-ACC-GTTTTCGATAAAATCAAAGTTCGT-CCTCAAATAAGACAAA
* * * * *** * *** * * * * * *
1658843 CATGGATTCT-AGTAATGATCTTTATTCATTTGGTGATTTGGCACTATAAACACATTCTCCTCAT
62 CATGAATACTCA-TACTAATCCCCATTCTTTTCAAGATTAGGCACCACAAACATAGTCTTCTCAT
* * **
1658907 TAGGAT-GAACGATATTGATGATTTTCTTTTGC
126 TAGGATACAAC-ATATTGATGCTTTGGTTTTGC
* * * * ** ** * * * * *
1658939 ATGGAAATCTTCTCTTAGCC-CTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATATGGCAAGC
1 A-GAAAAGCTTTTCTT-TCCACCGTTTTCGATAAAATCAAAGTTCGTCC-TCAAATAAGACAAAC
* * * * * ** * * * *
1659003 ATTG-ATTCTCTTAATAGTCTCCATTCTTTTCAAGATT-GAAAAGCAAAAACACATTCCTT-TCA
63 A-TGAATACTCATACTAATCCCCATTCTTTTCAAGATTAG-GCACCACAAACATAGT-CTTCTCA
* ** * * * *
1659065 TTAGGATGCATGACATTGATGCTTTGGTGTCGTA
125 TTAGGATACAACATATTGATGCTTTGGTTTTG-C
* * * * * *
1659099 AGAAAAGCTTTTCTTTCCACCGTTTTTGACAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAC
1 AGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTCGTC-CTCAAATAAGACAAACAT
** * * * * * *
1659164 GAGCACTTATACTAATCCCCATTCATTTCAGGATTAGGCATCATAAACATAGTCTTCTTATTAGG
65 GAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCACAAACATAGTCTTCTCATTAGG
** * *
1659229 ATACATTATATTGAAGCTTTGGTTTCGC
130 ATACAACATATTGATGCTTTGGTTTTGC
* * * * * * * * * * * *
1659257 AAGAAAGGCTTTTTTTTCACCCCAATTTTTG-TGAAGTCTAAGTTCGTGCCTCTAATGAGATACA
1 -AGAAAAGCTTTTCTTTC-CACC-GTTTTCGATAAAATCAAAGTTCGT-CCTCAAATAAGACAAA
* * * * * *** **** * * * * * * *
1659321 TATGGATTCT-AGTAATGATATTCATTCTTTTGGTCATTAGACACTATAAACACATTCTCCTCAA
62 CATGAATACTCA-TACTAATCCCCATTCTTTTCAAGATTAGGCACCACAAACATAGTCTTCTCAT
* * ** *
1659385 TAGGATA-AATGATATTGATGATTTTCTTTTAC
126 TAGGATACAA-CATATTGATGCTTTGGTTTTGC
* * * *** ** * * * * * *
1659417 AATGGAAATCTTTTCTTAGCC-TTATTTTCCTTAAAATCAAAGTTCATCTTTTAAATATGGCAAG
1 -A-GAAAAGCTTTTCTT-TCCACCGTTTTCGATAAAATCAAAGTTCGTC-CTCAAATAAGACAAA
* * * * * * * * * * * * *
1659481 CATCG-ATTCTCGTAATAGTCTCCATTCTTTTTAAGATTGGGAAGCAAAAACACATTC-CCTTCA
62 CAT-GAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCACAAACATAGTCTTC-TCA
** * * * *
1659544 TTAGGATACATGACATTGATGCTTTGGTGTCGTA
125 TTAGGATACAACATATTGATGCTTTGGTTTTG-C
* * * * * *
1659578 AGAAAAGCTTTTCTTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACA
1 AGAAAAGCTTTTC-TTTCCACCGTTTTCGATAAAATCAAAGTTCGTC-CTCAAATAAGACAAACA
* * * ** ** * *
1659643 TGAATACTCATACTAATCCCCGTTCTTTTTAGGATTAGATAGCGTC-AACATAGTCTTCTTACTA
64 TGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCA-CCACAAACATAGTCTTCTCATTA
* *
1659707 GGATACATCATATTGATGCTTTGGTTTCGC
128 GGATACAACATATTGATGCTTTGGTTTTGC
* * * * * * * * * *
1659737 AAGAAAGGCTTTTTTTTCACACCAATTTTTG-TAAAGTCTAAGTTCGTGCCTCTAATGAGATACA
1 -AGAAAAGCTTTTCTTTC-CACC-GTTTTCGATAAAATCAAAGTTCGT-CCTCAAATAAGACAAA
* * * * **** ** * * * ** * *
1659801 TATGGATTCT-AGTA-AAGATCTTTTTTCATTTT-TTGAATAGGTACTATGAACA-ATTCTCCTC
62 CATGAATACTCA-TACTA-ATCCCCATTC-TTTTCAAGATTAGGCACCACAAACATAGTCTTCTC
* * **
1659862 -TTCAGGATA-AATGATATTGATGATTTTATTTTGC
124 ATT-AGGATACAA-CATATTGATGCTTTGGTTTTGC
* * * * *** ** * * * *
1659896 ATGGATATCTTTTCTTT-AAGTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAACAA-ACCAAG
1 A-GAAAAGCTTTTCTTTCCA-CCGTTTTCGATAAAATCAAAGTTCGTCC-TCAAATAAGA-CAAA
* * * ** * * * * ***
1659959 CTTCG-ATTCTCATAATAGCCCCCATTCCTTTT-AAGATTGGGAAGCGAACACACATTCACTT-T
62 CAT-GAATACTCATACTAATCCCCATT-CTTTTCAAGATTAGGCA-C-CACAAACATAGTCTTCT
* ** * * *
1660021 -TTTAGGATACATGAAATTGATGCTTTGGTGTTGTA
123 CATTAGGATACAACATATTGATGCTTTGGTTTTG-C
* ** *
1660056 AGAAAAGCTTTTCTTTCCACCGTTTTTGATAAAATCAAAGTTTATCTCTTAAA-AACGACAAACA
1 AGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTCGTC-CTCAAATAA-GACAAACA
* * ***
1660120 TGAATACTCATACTAATCCTCATTCTTTTCAGGATTAGGCACCACAAATGCAGTCTTCTCATTAG
64 TGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCACAAACATAGTCTTCTCATTAG
* *
1660185 GATACATCATATTGATGCTTTGGTTTCGC
129 GATACAACATATTGATGCTTTGGTTTTGC
* * * * * * * * *
1660214 AGGAAAGGC-TTT-TTTCCTACCAATTTTTG-TAAAGTCTAAGTTTGTGACTTAAATGAGACAAA
1 A-GAAAAGCTTTTCTTTCC-ACC-GTTTTCGATAAAATCAAAGTTCGT-CCTCAAATAAGACAAA
* * * * *** * *** * * * * * *
1660276 CATGGATTCT-AGTAATGATCTTTATTCATTTGGTGATTTGGCACTATAAACACATTCTCCTCAT
62 CATGAATACTCA-TACTAATCCCCATTCTTTTCAAGATTAGGCACCACAAACATAGTCTTCTCAT
* * **
1660340 TAGGAT-GAACGATATTGATGATTTTCTTTTGC
126 TAGGATACAAC-ATATTGATGCTTTGGTTTTGC
* * * ** ** * * * * *
1660372 ATGGAAATCTTCTCTTTGCC-CTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATATGGCAAGC
1 A-GAAAAGCTTTTCTTT-CCACCGTTTTCGATAAAATCAAAGTTCGTCC-TCAAATAAGACAAAC
* * * * * ** * * * *
1660436 ATCG-ATTCTCTTAATAGTCTCCATTCTTTTCAAGATT-GAAAAGCAAAAACACATTCCTT-TCA
63 AT-GAATACTCATACTAATCCCCATTCTTTTCAAGATTAG-GCACCACAAACATAGT-CTTCTCA
* ** * * * *
1660498 TTAGGATGCATGACATTGATGCTTTGGTGTCGTA
125 TTAGGATACAACATATTGATGCTTTGGTTTTG-C
* * * * * * *
1660532 AGAAAAGCTTTTCATTCCACCGTTTTTGACAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAC
1 AGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTCGTC-CTCAAATAAGACAAACAT
** * * * * * *
1660597 GAGCACTTATACTAATCCCCATTCATTTCAGGATTAGGCATCATAAACATAGTCTTCTTATTAGG
65 GAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCACAAACATAGTCTTCTCATTAGG
** * *
1660662 ATACATTATATTGAAGCTTTGGTTTCGC
130 ATACAACATATTGATGCTTTGGTTTTGC
* * * * * * * * * * * *
1660690 AAGAAAGGCTTTTTTTTCACCCCAATTTTTG-TGAAGTCTAAGTTCGTGCCTCTAATGAGATACA
1 -AGAAAAGCTTTTCTTTC-CACC-GTTTTCGATAAAATCAAAGTTCGT-CCTCAAATAAGACAAA
* * * * ***** ** * * * * *
1660754 TATGGATTCT-AGTA-AAGATTTTTTTTCATTTT-TTGAATAGGTACTATAAAC--AGTTCTCCT
62 CATGAATACTCA-TACTA-ATCCCCATTC-TTTTCAAGATTAGGCACCACAAACATAG-TCTTCT
* * * * **
1660814 C-TTCAAGATA-AATGATATTAATGATTTTATTTTGC
123 CATT-AGGATACAA-CATATTGATGCTTTGGTTTTGC
* * * * **** ** * * * *
1660849 TTGGAAATCTTTTCTTTACGTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAACAA-ACCAAGC
1 -AGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTCGTCC-TCAAATAAGA-CAAAC
* * * ** * * * * *
1660913 TTCG-ATTCTCATAATAGCCCCCATTCCTTTT-AAGATTGGGAATCA-AACACACATTCACTT-T
63 AT-GAATACTCATACTAATCCCCATT-CTTTTCAAGATTAGGCACCACAA-ACATAGT--CTTCT
* ** * * * *
1660974 -TTTAGGATACATGAAATTGATGCTTTGGTGTCGTA
123 CATTAGGATACAACATATTGATGCTTTGGTTTTG-C
** *
1661009 AGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTATCTCTTAAA-AACGACAAACA
1 AGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTCGTC-CTCAAATAA-GACAAACA
* * ***
1661073 TGAATACTCATACTAATCCTCATTCTTTTCAGGATTAGGCACCACAAATGCAGTCTTCTCATTAG
64 TGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCACAAACATAGTCTTCTCATTAG
* *
1661138 GATACATCATATTGATGCTTTGGTTTCGC
129 GATACAACATATTGATGCTTTGGTTTTGC
* * * * * * * * * *
1661167 AGGAAAGGC-TTT-TTTCCTACCAATTTTTG-TAAAGTCTATGTTTGTGACTTAAATGAGACAAA
1 A-GAAAAGCTTTTCTTTCC-ACC-GTTTTCGATAAAATCAAAGTTCGT-CCTCAAATAAGACAAA
* * * * *** * *** * * * * * *
1661229 CATGGATTCT-AGTAATGATCTTTATTCATTTGGTGATTTGGCACTATAAACACATTCTCCTCAT
62 CATGAATACTCA-TACTAATCCCCATTCTTTTCAAGATTAGGCACCACAAACATAGTCTTCTCAT
* * ***
1661293 TAGGAT-GAACGATATTGATGATTTTCATTTGC
126 TAGGATACAAC-ATATTGATGCTTTGGTTTTGC
* * * * ** ** * * * * *
1661325 ATGGAAATCTTCTCTTAGCC-CTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATATGGCAAGC
1 A-GAAAAGCTTTTCTT-TCCACCGTTTTCGATAAAATCAAAGTTCGTCC-TCAAATAAGACAAAC
* * * * * ** * * * *
1661389 ATCG-ATTCTCTTAATAGTCTCCATTCTTTTCAAGATT-GAAAAGCAAAAACACATTCCTT-TCA
63 AT-GAATACTCATACTAATCCCCATTCTTTTCAAGATTAG-GCACCACAAACATAGT-CTTCTCA
* ** * * * *
1661451 TTAGGATGCATGACATTGATGCTTTGGTGTCGTA
125 TTAGGATACAACATATTGATGCTTTGGTTTTG-C
* * * * * *
1661485 AGAAAAGCTTTTCTTTCCACCGTTTTTGACAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAC
1 AGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTCGTC-CTCAAATAAGACAAACAT
* * * * * * * *
1661550 AAACACTTATACTAATCCCCATTCATTTCAGGATTAGGCATCATAAACATAGTCTTCTTATTAGG
65 GAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCACAAACATAGTCTTCTCATTAGG
** * *
1661615 ATACATTATATTGAAGCTTTGGTTTCGC
130 ATACAACATATTGATGCTTTGGTTTTGC
* * * * * * ** *
1661643 AAGAAAGGCTTTT-TTTCACACCAATTTTTG-TAAACTCTAAGTTCGTGCCTCTAACGAGATAAA
1 -AGAAAAGCTTTTCTTTC-CACC-GTTTTCGATAAAATCAAAGTTCGT-CCTCAAATAAGACAAA
* * * ** **** ** ** * * *
1661706 CATGGATTCT-AGAAAAGATCTTTTTTCATTTT-GTGATTAGGTGCTACAAACA-ATTCTCCTC-
62 CATGAATACTCATACTA-ATCCCCATTC-TTTTCAAGATTAGGCACCACAAACATAGTCTTCTCA
* * **
1661767 TTCAGGATA-AATGATATTGATGATTTTATTTTGC
125 TT-AGGATACAA-CATATTGATGCTTTGGTTTTGC
* * * ** * * *
1661801 GTGGAAATCTTTTC-TT-CA-CGTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAACAA-ACCA
1 -AGAAAAGCTTTTCTTTCCACCG---TTTTCGATAAAATCAAAGTTCGTCC-TCAAATAAGA-CA
* * * * * * ** * * * * ***
1661862 AGCTTCG-ATTCACATAAT-AGCCTCCATTCTTTTTTAGATTGGGAAGCGAACACACATTCCCTT
60 AACAT-GAATACTCATACTAATCC-CCATTCTTTTCAAGATTAGGCA-C-CACAAACATAGTCTT
* ** * * ***
1661925 -T-ATTAGGATCCATGAAATTGATGCTTTGGTGTCAT
121 CTCATTAGGATACAACATATTGATGCTTTGGTTTTGC
* ** * * * *
1661960 AGGAAAAGCTTTTCTTTCCACCTTTTTTTATAGAATCAAAGTTTGTCTCTTAAATACGACAAACA
1 A-GAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTCGTC-CTCAAATAAGACAAACA
* * *
1662025 TGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTCATTAG
64 TGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCACAAACATAGTCTTCTCATTAG
* * *
1662090 GATACATCATATTGATGCTTTGGCTTCGC
129 GATACAACATATTGATGCTTTGGTTTTGC
* * * * * * * * *
1662119 AGGAAAGGC-TTT-TTTCTTACCAATTTTTG-TAAAGTCTAAGTTCATGACTCAAATGAGACAAA
1 A-GAAAAGCTTTTCTTTC-CACC-GTTTTCGATAAAATCAAAGTTCGT-CCTCAAATAAGACAAA
* * * * ** **** * * * * * * * *
1662181 CATGGATTCT-AGTAATGATCTTCATTCTTTTGGTCATTAGGCGCTATAAACACATTCTCCTTAA
62 CATGAATACTCA-TACTAATCCCCATTCTTTTCAAGATTAGGCACCACAAACATAGTCTTCTCAT
* * **
1662245 TAGGATA-AATGATATTGATGATTTTCTTTTGC
126 TAGGATACAA-CATATTGATGCTTTGGTTTTGC
* ** ** * * * * * * *
1662277 ATGAAAATCTTTTCTTTGCC-CTATTTTCCTTAAAATCTAAGCTCATCTTTTAAATAAGGCAAGC
1 A-GAAAAGCTTTTCTTT-CCACCGTTTTCGATAAAATCAAAGTTCGTC-CTCAAATAAGACAA-A
* * * * * * * * * *
1662341 CTTG-ATTCTCGTAAC-GATCTCCATTCTTTTCATGATTTGG-ATGCCA-AAACACATTC-CCTT
62 CATGAATACTCAT-ACTAATCCCCATTCTTTTCAAGATTAGGCA--CCACAAACATAGTCTTC-T
* * * **
1662401 CATTAGGGTA-AATGACATTGATGCTTTGGGGTTGC
123 CATTAGGATACAA-CATATTGATGCTTTGGTTTTGC
* * * * * *
1662436 AAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAGATATGACAAACA
1 -AGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTCGTC-CTCAAATAAGACAAACA
* * * * *
1662501 TGAATACTCATACTAGTCCCCGTTCTTTTCAAGATTAGGCACCATAAGCATAGTCTTCTCATTCG
64 TGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCACAAACATAGTCTTCTCATTAG
* * * * **
1662566 AATGCATCATAATGATGCTTTTATTTTGC
129 GATACAACATATTGATGCTTTGGTTTTGC
* * * * * * * * *
1662595 AAGAAAGGCTTTT-TTCCCACCAATTTTTG-TAAAGTCTAAGTTCTTGCCTTAAATGAGACAAAC
1 -AGAAAAGCTTTTCTTTCCACC-GTTTTCGATAAAATCAAAGTTCGT-CCTCAAATAAGACAAAC
* * ** * ** * ** * * *
1662658 ATTG-ATTCT-AGTA-AAGATCTTCGTTCATTTT-GTGATTAGGTA-CTTAAACACATTCTGCTC
63 A-TGAATACTCA-TACTA-ATCCCCATTC-TTTTCAAGATTAGGCACCACAAACATAGTCTTCTC
* * * **
1662718 ATTAGAATA-AATGATATTGATGATTTTATTTTGC
124 ATTAGGATACAA-CATATTGATGCTTTGGTTTTGC
* * ** * * * * * *
1662752 ATGGAAATCTTTTCTTTACC-CTATTTTTC-TTAGAATCAAAGTTCTTCCTTTAAATAAGGCAAG
1 A-GAAAAGCTTTTCTTT-CCAC-CGTTTTCGATAAAATCAAAGTTCGTCC-TCAAATAAGACAAA
* * * * * * * * *
1662815 CATCG-ATTCTCATAAC-AGTCTCCATTCTTTTCAAGATT-GAGAAGCAAAAACACATTC-CCTT
62 CAT-GAATACTCAT-ACTAATCCCCATTCTTTTCAAGATTAG-GCACCACAAACATAGTCTTC-T
* ** * * * *
1662876 CATTAGGATGCATGACATTGATGCTTTGGTGTCGTA
123 CATTAGGATACAACATATTGATGCTTTGGTTTTG-C
* * * * * * *
1662912 AGAAAAGCTTTTCTTTCTACCGTTTTTGACAGAAT-AAAGGTTTGTCTCTTAAATATGACAAACA
1 AGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAA-GTTCGTC-CTCAAATAAGACAAACA
* * * * * *
1662976 AGAATACTGATACTAATCACCATT-TTCTTCAGGATTAGGTC-CCATAAACATAGTCTTCTTATT
64 TGAATACTCATACTAATCCCCATTCTT-TTCAAGATTAGG-CACCACAAACATAGTCTTCTCATT
1663039 AGGATAC-ACGATATTGATGCTTTGGTTTTGC
127 AGGATACAAC-ATATTGATGCTTTGGTTTTGC
*
1663070 AAGAAAGGCTTTT
1 -AGAAAAGCTTTT
1663083 TTCCCCCCAA
Statistics
Matches: 7959, Mismatches: 2860, Indels: 1286
0.66 0.24 0.11
Matches are distributed among these distances:
155 1 0.00
156 20 0.00
157 350 0.04
158 1681 0.21
159 3560 0.45
160 2115 0.27
161 226 0.03
162 6 0.00
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.37
Consensus pattern (157 bp):
AGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTCGTCCTCAAATAAGACAAACATG
AATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCACAAACATAGTCTTCTCATTAGGA
TACAACATATTGATGCTTTGGTTTTGC
Found at i:1651924 original size:953 final size:953
Alignment explanation
Indices: 1649656--1663252 Score: 17775
Period size: 953 Copynumber: 14.2 Consensus size: 953
1649646 AACATGTATA
* * * * * *
1649656 CACCATAAACATAGTCTTCTCATTCGAATACATCATAATGATGCTTTGGTTTTGCAAGAAAGGCT
1 CACCACAAACATAGTCTTCTTATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCT
* * * * * *
1649721 TTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTACCTCAAATGGGACAAACAAGGATTCCAGT
66 TTTTTCCAACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGT
* * * * *
1649786 AAAGATCTTCATTCATTTTATGATTAGGTACTATAAACACATTCTACTCATTAGGATAAATGATA
131 AATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
* *
1649851 TTGATGATTTTATTTTGCATGGAAATCTTTTCTTTA-CCCTATTTTTCTTAAAATCAAAGTTCAT
196 TTGATGATTTTCTTTTGCATGGAAATCTTTTC-TTAGCCCTATTTTCCTTAAAATCAAAGTTCAT
* * * * * *
1649915 CCTTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCAATTCTTCTCAAGATTGAGAAGCAAA
260 CCTTTAAATATGGCAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAAGCAAA
** * * * *
1649980 AACACATTCCCCTCATTAGGATGCGTGACCTTGATGCTTTGGTGCCGTAAGAAGAAAAGCTTTTC
325 AACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGT---AAGAAAAGCTTTTC
* * * * * * *
1650045 TTTCCACCATTTTTGACAGAATGAAGGTTTGTCTCTTAAATACGACAAACAAGAATATTGATACT
387 TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATACT
** *
1650110 AATCCCTGTT-TTCTTCAGGATTAGGTACCATAAACATAGTCTTCTTATTAGGATACA-CGATAT
452 AATCCCCATTCTT-TTCAGGATTAGGCACCATAAACATAGTCTTCTTATTAGGATACATC-ATAT
* * * * * *
1650173 TGATGCTTTGGTTTTGCAAGAAAGGC-TTTCTTCCCCCCAACTTTTATAAAGTCTAAGTTCGTGC
515 TGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTTCACACCAATTTTTGTAAAGTCTAAGTTCGTGC
* * * * * * * *
1650237 CTCAAATGAGACAAACATGGATTCTAGTGATGATCTTCATACATTTGGTGATTTGGCACTATAAA
580 CTCTAATGAGATAAACATGGATTCTAGTAAAGATCTTTATTCATTTTGTGATTAGGCACTATAAA
*
1650302 CACATTCTACTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGGAAATCTTTTCTTTAC
645 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGGAAATCTTTTCTTTAC
* * *
1650367 CCTATTTTTCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCATT-GATTCTCATAACAGTC
710 CTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGC-TTCGATTCTCATAATAGTC
* * * * * * * *
1650431 TCAATTCTTCTCAAGATTGAGAAGCAAAAACACATTCCCCTCATTAGGATACGTGACCTTGATGC
774 TCCATTCTTTTTAAGATTGGGAAGCAAAAACACATTCCCTTTATTAGGATACATGACATTGATGC
* * * * *
1650496 TTTGGTGCCGTAAGAAGAAAAGCTTTTCTTTCCACCATTTTTGACAGAATGAAGGTTTGTCTCTT
839 TTTGGTGTCGT---AAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTT
* * * **
1650561 AAATACGACAAACAAGAATATTGATACTAATCCCTGTT-TTCTTCAGGATTAGG
901 AAATACGACAAACATGAATACTCATACTAATCCCCATTCTT-TTCAGGATTAGG
* * *
1650614 TACCATAAACATAGTCTTCTTATTAGGATACA-CGATATTGATGCTTTGGTTTTGCAAGAAAGGC
1 CACCACAAACATAGTCTTCTTATTAGGATACATC-ATATTGATGCTTTGGTTTCGCAAGAAAGGC
* ** * *
1650678 TTTCTTCCCCCCAACTTTTATAAAGTCTAAGTTCGTGCCTCAAATGAGACAAA-ATGGATTCTAG
65 TTTTTTCCAACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAG
* * * * * *
1650742 TGATGATCTTCATACATTTGGTGATTTGGCACTATAAACACATTCTCCTCATTAGGATGAATGAT
130 TAATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGAT
* * * * *
1650807 ATTGATCATTTTCTTTTGTAGGGAAATCTTTTCTTAGCCCTACTTTCCTTAAAACCAAAGTTCAT
195 ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTAGCCCTATTTTCCTTAAAATCAAAGTTCAT
* * * *
1650872 CTTTTAAATATGGCAAGCATCGATTCTCGTAATAGTCTCCATT-TGTTT-AACATTGGGAAGCGA
260 CCTTTAAATATGGCAAGCATCGATTCTCATAATAGTCTCCATTCT-TTTCAAGATTGGGAAGCAA
* * *
1650935 AAACACATTCCCTTCATTAGGCTACATGACATTGATGCTTTGGTGTGGTAAGAAAAGCTTTTCTT
324 AAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTT
* * *
1651000 TCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAAAACTTATACTAA
389 TCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATACTAA
* * * * *
1651065 TCCCCGTTCTTTTTAGGATTAGGCAGCATAAACTTAGTCTTCTTATTAGGATACATCATATTGAA
454 TCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTATTAGGATACATCATATTGAT
* *
1651130 GCTTTGGTTTCGCAAGAAAGGCTTTTTTTTCACACCCATTTTTGTAAAGTCTAAGTTCGTGCCTG
519 GCTTTGGTTTCGCAAGAAAGGC-TTTTTTTCACACCAATTTTTGTAAAGTCTAAGTTCGTGCCTC
* * * * * **
1651195 TAGTGAGATAAACATGGATTCTAGTAAAGAGCTTTTTTCATTTTTTGAATAGGTGCTATAAACA-
583 TAATGAGATAAACATGGATTCTAGTAAAGATCTTTATTCATTTTGTGATTAGGCACTATAAACAC
* * *
1651259 ATTCTCCTCTTTAGGATAAATGATACTGATGATTTTATTTTGCATGGAAATCTTTTCTTTACGTT
648 ATTCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGGAAATCTTTTCTTTACCTT
** ** * ** * * *
1651324 ATTTTCCTTAAAAAAAAAGCACATCCTTTAAACAAACCAAGCTTCGATTCTTATAATAGCCCCCA
713 ATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCTTCGATTCTCATAATAGTCTCCA
* * * * *
1651389 TTCTTTTTAAGATTAGGAAGCGAACACACATTCCCTTTATTAGGATACATGAAATTAATGCTTTG
778 TTCTTTTTAAGATTGGGAAGCAAAAACACATTCCCTTTATTAGGATACATGACATTGATGCTTTG
* * * *
1651454 GTGTCATAAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTGTCTCTCAAATACG
843 GTGTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACG
*
1651519 ACAAACATGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGG
908 ACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGG
* * * *
1651565 CACCACAAATATAGTCTTCTCT-TTAGGATACATCATAATGATGCTTTGGTTTTGCGAGAAAGGC
1 CACCACAAACATAGTCTTCT-TATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGC
*
1651629 TTTTTTCCAACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATAAGACAAACATGGATTCTAG
65 TTTTTTCCAACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAG
* * * * * * * *
1651694 TAAAGATCTTTGTTCATTTTCTGATTAGGTACTACAAACACAATCTGCTCATTAGGATAAACGAT
130 TAATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGAT
* * *
1651759 ATTGATGATTTTATTTTGCATGGAAATCTTTTCTTTA-CCCTATTTTTCTTAAAATCAAACTTCA
195 ATTGATGATTTTCTTTTGCATGGAAATCTTTTC-TTAGCCCTATTTTCCTTAAAATCAAAGTTCA
* * * * *
1651823 TCCTTTAAATAAGGCAAGCATCAATTCTCATAACAGTTTCCA-TCTTTTCCAAGATTGAGAAGCA
259 TCCTTTAAATATGGCAAGCATCGATTCTCATAATAGTCTCCATTCTTTT-CAAGATTGGGAAGCA
* * * *
1651887 AAAACATATTCCTTTCATTAGGATGCAAGATATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCT
323 AAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCT
* *
1651952 TTCCACCGTTTTTGACAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCAAACTA
388 TTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATACTA
* * * * *
1652017 ATCCCCGTTCCTTTCAGGATTAGGCACCAT-AACGTAGTCTCCTCATTAGGATACATCATATTGA
453 ATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTATTAGGATACATCATATTGA
* * * * * * *
1652081 CGCTTTGGTTTTGCAGGAAAGGC-TTTTTTC-CTACCAATTTTTTTGAAGTCTAAGTTCATGACT
518 TGCTTTGGTTTCGCAAGAAAGGCTTTTTTTCAC-ACCAATTTTTGTAAAGTCTAAGTTCGTGCCT
* * * * * * * *
1652144 CAAATGAGACAAACATGGATTCTAGTAATGATATTCATTC-TTTGGTCATTAGACACTATAAACA
582 CTAATGAGATAAACATGGATTCTAGTAAAGATCTTTATTCATTTTGTGATTAGGCACTATAAACA
* * *
1652208 CATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTTTTACAATGGAAATCTTTTC-TTAGC
647 CATTCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGC-ATGGAAATCTTTTCTTTA-C
* * * *
1652272 CTTATTTTCCTTAAAATCAAAGTTCATCTTTTAAATATGGCAAGCATCGATTCTCGTAATAGTCT
710 CTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCTTCGATTCTCATAATAGTCT
*
1652337 CCATTCTTTTTAAGATTGGGAAGCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCT
775 CCATTCTTTTTAAGATTGGGAAGCAAAAACACATTCCCTTTATTAGGATACATGACATTGATGCT
* *
1652402 TTGGTGTCGTAAGAAAAGCTTTTCTTTTCCACCATTTTTGATAGAATCAAAGTTTATCTCTTAAA
840 TTGGTGTCGTAAGAAAAGCTTTTC-TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAA
* * *
1652467 TACGACAAACATGAATACTCATACTAATCCCCGTTCTTTTTAGGATTAGA
904 TACGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGG
* ** *
1652517 TAGCGTC-AACATAGTCTTCTTACTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGC
1 CA-CCACAAACATAGTCTTCTTATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGC
* * * * *
1652581 TTTTTTTTCACACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCTAATGAGATACATATGGATTCT
65 -TTTTTTCCA-ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCT
* * * * * *
1652646 AGTAAAGATCTTTTTTCATTTTTTGAATAGGTACTATGAACA-ATTCTCCTC-TTCAGGATAAAT
128 AGTAATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATT-AGGATAAAT
* * *
1652709 GATATTGATGATTTTATTTTGCATGGATATCTTTTCTTTAAG--TTATTTTCCTTAAAATCAAAG
192 GATATTGATGATTTTCTTTTGCATGGAAATCTTTTC-TT-AGCCCTATTTTCCTTAAAATCAAAG
* *** * * *
1652772 TTCATCCTTTAAACAAACCAAGCTTCGATTCTCATAATAGCCCCCATTCCTTTT-AAGATTGGGA
255 TTCATCCTTTAAATATGGCAAGCATCGATTCTCATAATAGTCTCCATT-CTTTTCAAGATTGGGA
* * * * * *
1652836 AGCGAACACACATTCACTTT-TTTAGGATACATGAAATTGATGCTTTGATGTTGTAAGAAAAGCT
319 AGCAAAAACACATTC-CTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCT
* * *
1652900 TTTCTTTCCACCGTTTTTGATAAAATCAAAGTTTATCTCTTAAAAACGACAAACATGAATACTCA
383 TTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCA
* * * *** *
1652965 TACTAATCCTCATTCTTTTCAAGATTAGGCACCACAAATGCAGTCTTCTCATTAGGATACATCAT
448 TACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTATTAGGATACATCAT
* *
1653030 ATTGATGCTTTGGTTTCGCAGGAAAGGC-TTTTTTC-CTACCAATTTTTGTAAAGTCTAAGTTTG
513 ATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTTCAC-ACCAATTTTTGTAAAGTCTAAGTTCG
* * * * *
1653093 TGACT-TAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTGGTGATTTGGCACTA
577 TGCCTCT-AATGAGATAAACATGGATTCTAGTAAAGATCTTTATTCATTTTGTGATTAGGCACTA
* * * *
1653157 TAAACACATTCTCCTCATTAGGATGAACGATATTGATGATTTTCTTTTGCATGGAAATCTTCTC-
641 TAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGGAAATCTTTTCT
* * * *
1653221 TTAGCCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATATGGCAAGCATCGATTCTCTTAAT
706 TTA-CCTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCTTCGATTCTCATAAT
* ** *
1653286 AGTCTCCATTCTTTTCAAGATTGAAAAGCAAAAACACATT-CCTTTCATTAGGATGCATGACATT
770 AGTCTCCATTCTTTTTAAGATTGGGAAGCAAAAACACATTCCCTTT-ATTAGGATACATGACATT
*
1653350 GATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTTGACAGAATCAAAGTTTGTCTC
834 GATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTC
* * ** * *
1653415 TTAAATAAGACAAACACGAGCACTTATACTAATCCCCATTCATTTCAGGATTAGG
899 TTAAATACGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGG
* * * *
1653470 CATCATAAACATAGTCTTCTTATTAGGATACATTATATTGAAGCTTTGGTTTCGCAAGAAAGGCT
1 CACCACAAACATAGTCTTCTTATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGC-
* * * * * * *
1653535 TTTTTTTCACCCCAATTTTTGTGAAGTCTAAGTTCGTGCCTCTAATGAGATACATATGGATTCTA
65 TTTTTTCCA-ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTA
* * * * *
1653600 GTAATGATATTCATTC-TTTTGGTCATTAGACACTATAAACACATTCTCCTCAATAGGATAAATG
129 GTAATGATCTTTATTCATTTT-GTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATG
* *
1653664 ATATTGATGATTTTCTTTTACAATGGAAATCTTTTCTTAGCCTTATTTTCCTTAAAATCAAAGTT
193 ATATTGATGATTTTCTTTTGC-ATGGAAATCTTTTCTTAGCCCTATTTTCCTTAAAATCAAAGTT
* * *
1653729 CATCTTTTAAATATGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTTAAGATTGGGAAGC
257 CATCCTTTAAATATGGCAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAAGC
*
1653794 AAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTC
322 AAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTC
* *
1653859 TTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCATAC
387 -TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATAC
* * * ** * * * *
1653924 TAATCCTCGTTCTTTTTAGGATTAGATAGCGTCAACATAGTCTTCTTACTAGGATACATCATATT
451 TAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTATTAGGATACATCATATT
1653989 GATGCTTTGGTTTCGCAAGAAAGGCTTTTTTTTCACACCAATTTTTGTAAAGTCTAAGTTCGTGC
516 GATGCTTTGGTTTCGCAAGAAAGGC-TTTTTTTCACACCAATTTTTGTAAAGTCTAAGTTCGTGC
* * * * * * *
1654054 CTCTAATGAGATACATATGGATTCTAGTAAAGATCTTTTTTCATTTTTTGAATAGGTACTATGAA
580 CTCTAATGAGATAAACATGGATTCTAGTAAAGATCTTTATTCATTTTGTGATTAGGCACTATAAA
*
1654119 CA-ATTCTCCTC-TTCAGGATAAATGATATTGATGATTTTATTTTGCATGGATATCTTTTCTTTA
645 CACATTCTCCTCATT-AGGATAAATGATATTGATGATTTTATTTTGCATGGAAATCTTTTCTTTA
** * ** *
1654182 AGTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAACAAACCAAGCTTCGATTCTCATAATAGCC
709 CCTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCTTCGATTCTCATAATAGTC
* * * * * * *
1654247 CCCATTCCTTTTAAGATTGGGAAGCGAACACACATTCACTTTTTTAGGATACATGAAATTGATGC
774 TCCATTCTTTTTAAGATTGGGAAGCAAAAACACATTCCCTTTATTAGGATACATGACATTGATGC
* * *
1654312 TTTGGTGTTGTAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAAAATCAAAGTTTATCTCTTAAA
839 TTTGGTGTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAA
* *
1654377 AACGACAAACATGAATACTCATACTAATCCTCATTCTTTTCAGGATTAGG
904 TACGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGG
*** * * *
1654427 CACCACAAATGCAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAGGAAACGCT
1 CACCACAAACATAGTCTTCTTATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCT
* * * *
1654492 TTTTTCCTACCAATTTTTGTAAAGTCTAAGTTTGTGACTTAAATGAGACAAACATGGATTCTAGT
66 TTTTTCCAACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGT
* * * *
1654557 AATGATCTTTATTCATTTGGTGATTTGGCACTATAAACACATTCTCCTCATTAGGATGAACGATA
131 AATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
*
1654622 TTGATGATTTTCTTTTGCATGGAAATCTTCTCTTAGCCCTATTTTCCTTAAAATCAAAGTTCATC
196 TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTAGCCCTATTTTCCTTAAAATCAAAGTTCATC
* * **
1654687 CTTTAAATATGGCAAGCATTGATTCTCTTAATAGTCTCCATTCTTTTCAAGATTGAAAAGCAAAA
261 CTTTAAATATGGCAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAAGCAAAA
*
1654752 ACACATTCCTTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTC
326 ACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTC
* * * ** *
1654817 CACCGTTTTTGACAGAATCAAAGTTTGTCTCTTAAATAAGACAAACACGAGCACTTATACTAATC
391 CACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATACTAATC
* * * *
1654882 CCCATTCATTTCAGGATTAGGCATCATAAACATAGTCTTCTTATTAGGATACATTATATTGAAGC
456 CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTATTAGGATACATCATATTGATGC
* *
1654947 TTTGGTTTCGCAAGAAAGGCTTTTTTTTCACCCCAATTTTTGTGAAGTCTAAGTTCGTGCCTCTA
521 TTTGGTTTCGCAAGAAAGGC-TTTTTTTCACACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCTA
* * * * * * *
1655012 ATGAGATACATATGGATTCTAGTAATGATATTCATTC-TTTTGGTCATTAGACACTATAAACACA
585 ATGAGATAAACATGGATTCTAGTAAAGATCTTTATTCATTTT-GTGATTAGGCACTATAAACACA
* * *
1655076 TTCTCCTCAATAGGATAAATGATATTGATGATTTTCTTTTACAATGGAAATCTTTTC-TTAGCCT
649 TTCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGC-ATGGAAATCTTTTCTTTA-CCT
* * * *
1655140 TATTTTCCTTAAAATCAAAGTTCATCTTTTAAATATGGCAAGCATCGATTCTCGTAATAGTCTCC
712 TATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCTTCGATTCTCATAATAGTCTCC
*
1655205 ATTCTTTTTAAGATTGGGAAGCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTT
777 ATTCTTTTTAAGATTGGGAAGCAAAAACACATTCCCTTTATTAGGATACATGACATTGATGCTTT
*
1655270 GGTGTCGTAAGAAAAGCTTTTCTTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
842 GGTGTCGTAAGAAAAGCTTTTC-TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * * *
1655335 TGACAAACATGAATACTCATACTAATCCCCGTTCTTTTTAGGATTAGA
906 CGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGG
* ** *
1655383 TAGCGTC-AACATAGTCTTCTTACTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGC
1 CA-CCACAAACATAGTCTTCTTATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGC
* * * * *
1655447 TTTTTTTTCACACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCTAATGAGATACATATGGATTCT
65 -TTTTTTCCA-ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCT
* * * * * *
1655512 AGTAAAGATCTTTTTTCATTTTTTGAATAGGTACTATGAACA-ATTCTCCTC-TTCAGGATAAAT
128 AGTAATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATT-AGGATAAAT
* * *
1655575 GATATTGATGATTTTATTTTGCATGGATATCTTTTCTTTAAG--TTATTTTCCTTAAAATCAAAG
192 GATATTGATGATTTTCTTTTGCATGGAAATCTTTTC-TT-AGCCCTATTTTCCTTAAAATCAAAG
* *** * * *
1655638 TTCATCCTTTAAACAAACCAAGCTTCGATTCTCATAATAGCCCCCATTCCTTTT-AAGATTGGGA
255 TTCATCCTTTAAATATGGCAAGCATCGATTCTCATAATAGTCTCCATT-CTTTTCAAGATTGGGA
* * * * *
1655702 AGCGAACACACATTCACTTT-TTTAGGATACATGAAATTGATGCTTTGGTGTTGTAAGAAAAGCT
319 AGCAAAAACACATTC-CTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCT
* * *
1655766 TTTCTTTCCACCGTTTTTGATAAAATCAAAGTTTATCTCTTAAAAACGACAAACATGAATACTCA
383 TTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCA
* * *** *
1655831 TACTAATCCTCATTCTTTTCAGGATTAGGCACCACAAATGCAGTCTTCTCATTAGGATACATCAT
448 TACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTATTAGGATACATCAT
* * *
1655896 ATTGATGCTTTGGTTTCGCAGGAAACGC-TTTTTTC-CTACCAATTTTTGTAAAGTCTAAGTTTG
513 ATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTTCAC-ACCAATTTTTGTAAAGTCTAAGTTCG
* * * * *
1655959 TGACT-TAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTGGTGATTTGGCACTA
577 TGCCTCT-AATGAGATAAACATGGATTCTAGTAAAGATCTTTATTCATTTTGTGATTAGGCACTA
* * * *
1656023 TAAACACATTCTCCTCATTAGGATGAACGATATTGATGATTTTCTTTTGCATGGAAATCTTCTC-
641 TAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGGAAATCTTTTCT
* * *
1656087 TTAGCCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATATGGCAAGCATT-GATTCTCTTAA
706 TTA-CCTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGC-TTCGATTCTCATAA
* ** *
1656151 TAGTCTCCATTCTTTTCAAGATTGAAAAGCAAAAACACATT-CCTTTCATTAGGATGCATGACAT
769 TAGTCTCCATTCTTTTTAAGATTGGGAAGCAAAAACACATTCCCTTT-ATTAGGATACATGACAT
*
1656215 TGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTTGACAGAATCAAAGTTTGTCT
833 TGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCT
* * ** * * *
1656280 CTTAAATAAGACAAACACGAGCACTTATTCTAATCCCCATTCATTTCAGGATTAGG
898 CTTAAATACGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGG
* * * *
1656336 CATCATAAACATAGTCTTCTTATTAGGATACATTATATTGAAGCTTTGGTTTCGCAAGAAAGGCT
1 CACCACAAACATAGTCTTCTTATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGC-
* * * * * * *
1656401 TTTTTTTCACCCCAATTTTTGTGAAGTCTAAGTTCGTGCCTCTAATGAGATACATATGGATTCTA
65 TTTTTTCCA-ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTA
* * * * *
1656466 GTAATGATATTCATTC-TTTTGGTCATTAGACACTATAAACACATTCTCCTCAATAGGATAAATG
129 GTAATGATCTTTATTCATTTT-GTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATG
* *
1656530 ATATTGATGATTTTCTTTTACAATGGAAATCTTTTCTTAGCCTTATTTTCCTTAAAATCAAAGTT
193 ATATTGATGATTTTCTTTTGC-ATGGAAATCTTTTCTTAGCCCTATTTTCCTTAAAATCAAAGTT
* * *
1656595 CATCTTTTAAATATGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTTAAGATTGGGAAGC
257 CATCCTTTAAATATGGCAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAAGC
*
1656660 AAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTC
322 AAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTC
* *
1656725 TTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCATAC
387 -TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATAC
* * ** * * * *
1656790 TAATCCCCGTTCTTTTTAGGATTAGATAGCGTCAACATAGTCTTCTTACTAGGATACATCATATT
451 TAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTATTAGGATACATCATATT
1656855 GATGCTTTGGTTTCGCAAGAAAGGCTTTTTTTTCACACCAATTTTTGTAAAGTCTAAGTTCGTGC
516 GATGCTTTGGTTTCGCAAGAAAGGC-TTTTTTTCACACCAATTTTTGTAAAGTCTAAGTTCGTGC
* * * * * * *
1656920 CTCTAATGAGATACATATGGATTCTAGTAAAGATCTTTTTTCATTTTTTGAATAGGTACTATGAA
580 CTCTAATGAGATAAACATGGATTCTAGTAAAGATCTTTATTCATTTTGTGATTAGGCACTATAAA
*
1656985 CA-ATTCTCCTC-TTCAGGATAAATGATATTGATGATTTTATTTTGCATGGATATCTTTTCTTTA
645 CACATTCTCCTCATT-AGGATAAATGATATTGATGATTTTATTTTGCATGGAAATCTTTTCTTTA
** * ** *
1657048 AGTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAACAAACCAAGCTTCGATTCTCATAATAGCC
709 CCTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCTTCGATTCTCATAATAGTC
* * * * * * *
1657113 CCCATTCCTTTTAAGATTGGGAAGCGAACACACATTCACTTTTTTAGGATACATGAAATTGATGC
774 TCCATTCTTTTTAAGATTGGGAAGCAAAAACACATTCCCTTTATTAGGATACATGACATTGATGC
* * *
1657178 TTTGGTGTTGTAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAAAATCAAAGTTTATCTCTTAAA
839 TTTGGTGTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAA
* *
1657243 AACGACAAACATGAATACTCATACTAATCCTCATTCTTTTCAGGATTAGG
904 TACGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGG
*** * * *
1657293 CACCACAAATGCAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAGGAAACGCT
1 CACCACAAACATAGTCTTCTTATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCT
* * * *
1657358 TTTTTCCTACCAATTTTTGTAAAGTCTAAGTTTGTGACTTAAATGAGACAAACATGGATTCTAGT
66 TTTTTCCAACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGT
* * * *
1657423 AATGATCTTTATTCATTTGGTGATTTGGCACTATAAACACATTCTCCTCATTAGGATGAACGATA
131 AATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
*
1657488 TTGATGATTTTCTTTTGCATGGAAATCTTCTCTTAGCCCTATTTTCCTTAAAATCAAAGTTCATC
196 TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTAGCCCTATTTTCCTTAAAATCAAAGTTCATC
* * **
1657553 CTTTAAATATGGCAAGCATTGATTCTCTTAATAGTCTCCATTCTTTTCAAGATTGAAAAGCAAAA
261 CTTTAAATATGGCAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAAGCAAAA
*
1657618 ACACATTCCTTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTC
326 ACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTC
* * * ** *
1657683 CACCGTTTTTGACAGAATCAAAGTTTGTCTCTTAAATAAGACAAACACGAGCACTTATACTAATC
391 CACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATACTAATC
* * * *
1657748 CCCATTCATTTCAGGATTAGGCATCATAAACATAGTCTTCTTATTAGGATACATTATATTGAAGC
456 CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTATTAGGATACATCATATTGATGC
* *
1657813 TTTGGTTTCGCAAGAAAGGCTTTTTTTTCACCCCAATTTTTGTGAAGTCTAAGTTCGTGCCTCTA
521 TTTGGTTTCGCAAGAAAGGC-TTTTTTTCACACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCTA
* * * * * * *
1657878 ATGAGATACATATGGATTCTAGTAATGATATTCATTC-TTTTGGTCATTAGACACTATAAACACA
585 ATGAGATAAACATGGATTCTAGTAAAGATCTTTATTCATTTT-GTGATTAGGCACTATAAACACA
* * *
1657942 TTCTCCTCAATAGGATAAATGATATTGATGATTTTCTTTTACAATGGAAATCTTTTC-TTAGCCT
649 TTCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGC-ATGGAAATCTTTTCTTTA-CCT
* * * *
1658006 TATTTTCCTTAAAATCAAAGTTCATCTTTTAAATATGGCAAGCATCGATTCTCGTAATAGTCTCC
712 TATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCTTCGATTCTCATAATAGTCTCC
*
1658071 ATTCTTTTTAAGATTGGGAAGCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTT
777 ATTCTTTTTAAGATTGGGAAGCAAAAACACATTCCCTTTATTAGGATACATGACATTGATGCTTT
*
1658136 GGTGTCGTAAGAAAAGCTTTTCTTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
842 GGTGTCGTAAGAAAAGCTTTTC-TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * * *
1658201 TGACAAACATGAATACTCATACTAATCCCCGTTCTTTTTAGGATTAGA
906 CGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGG
* ** *
1658249 TAGCGTC-AACATAGTCTTCTTACTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGC
1 CA-CCACAAACATAGTCTTCTTATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGC
* * * * *
1658313 TTTTTTTTCACACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCTAATGAGATACATATGGATTCT
65 -TTTTTTCCA-ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCT
* * * * * *
1658378 AGTAAAGATCTTTTTTCATTTTTTGAATAGGTACTATGAACA-ATTCTCCTC-TTCAGGATAAAT
128 AGTAATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATT-AGGATAAAT
* * *
1658441 GATATTGATGATTTTATTTTGCATGGATATCTTTTCTTTAAG--TTATTTTCCTTAAAATCAAAG
192 GATATTGATGATTTTCTTTTGCATGGAAATCTTTTC-TT-AGCCCTATTTTCCTTAAAATCAAAG
* *** * * *
1658504 TTCATCCTTTAAACAAACCAAGCTTCGATTCTCATAATAGCCCCCATTCCTTTT-AAGATTGGGA
255 TTCATCCTTTAAATATGGCAAGCATCGATTCTCATAATAGTCTCCATT-CTTTTCAAGATTGGGA
* * * * *
1658568 AGCGAACACACATTCACTTT-TTTAGGATACATGAAATTGATGCTTTGGTGTTGTAAGAAAAGCT
319 AGCAAAAACACATTC-CTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCT
* * *
1658632 TTTCTTTCCACCGTTTTTGATAAAATCAAAGTTTATCTCTTAAAAACGACAAACATGAATACTCA
383 TTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCA
* * *** *
1658697 TACTAATCCTCATTCTTTTCAGGATTAGGCACCACAAATGCAGTCTTCTCATTAGGATACATCAT
448 TACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTATTAGGATACATCAT
* * *
1658762 ATTGATGCTTTGGTTTCGCAGGAAACGC-TTTTTTC-CTACCAATTTTTGTAAAGTCTAAGTTTG
513 ATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTTCAC-ACCAATTTTTGTAAAGTCTAAGTTCG
* * * * *
1658825 TGACT-TAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTGGTGATTTGGCACTA
577 TGCCTCT-AATGAGATAAACATGGATTCTAGTAAAGATCTTTATTCATTTTGTGATTAGGCACTA
* * * *
1658889 TAAACACATTCTCCTCATTAGGATGAACGATATTGATGATTTTCTTTTGCATGGAAATCTTCTC-
641 TAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGGAAATCTTTTCT
* * *
1658953 TTAGCCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATATGGCAAGCATT-GATTCTCTTAA
706 TTA-CCTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGC-TTCGATTCTCATAA
* ** *
1659017 TAGTCTCCATTCTTTTCAAGATTGAAAAGCAAAAACACATT-CCTTTCATTAGGATGCATGACAT
769 TAGTCTCCATTCTTTTTAAGATTGGGAAGCAAAAACACATTCCCTTT-ATTAGGATACATGACAT
*
1659081 TGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTTGACAGAATCAAAGTTTGTCT
833 TGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCT
* * ** * *
1659146 CTTAAATAAGACAAACACGAGCACTTATACTAATCCCCATTCATTTCAGGATTAGG
898 CTTAAATACGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGG
* * * *
1659202 CATCATAAACATAGTCTTCTTATTAGGATACATTATATTGAAGCTTTGGTTTCGCAAGAAAGGCT
1 CACCACAAACATAGTCTTCTTATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGC-
* * * * * * *
1659267 TTTTTTTCACCCCAATTTTTGTGAAGTCTAAGTTCGTGCCTCTAATGAGATACATATGGATTCTA
65 TTTTTTCCA-ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTA
* * * * *
1659332 GTAATGATATTCATTC-TTTTGGTCATTAGACACTATAAACACATTCTCCTCAATAGGATAAATG
129 GTAATGATCTTTATTCATTTT-GTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATG
* *
1659396 ATATTGATGATTTTCTTTTACAATGGAAATCTTTTCTTAGCCTTATTTTCCTTAAAATCAAAGTT
193 ATATTGATGATTTTCTTTTGC-ATGGAAATCTTTTCTTAGCCCTATTTTCCTTAAAATCAAAGTT
* * *
1659461 CATCTTTTAAATATGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTTAAGATTGGGAAGC
257 CATCCTTTAAATATGGCAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAAGC
*
1659526 AAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTC
322 AAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTC
* *
1659591 TTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCATAC
387 -TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATAC
* * ** * * * *
1659656 TAATCCCCGTTCTTTTTAGGATTAGATAGCGTCAACATAGTCTTCTTACTAGGATACATCATATT
451 TAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTATTAGGATACATCATATT
1659721 GATGCTTTGGTTTCGCAAGAAAGGCTTTTTTTTCACACCAATTTTTGTAAAGTCTAAGTTCGTGC
516 GATGCTTTGGTTTCGCAAGAAAGGC-TTTTTTTCACACCAATTTTTGTAAAGTCTAAGTTCGTGC
* * * * * * *
1659786 CTCTAATGAGATACATATGGATTCTAGTAAAGATCTTTTTTCATTTTTTGAATAGGTACTATGAA
580 CTCTAATGAGATAAACATGGATTCTAGTAAAGATCTTTATTCATTTTGTGATTAGGCACTATAAA
*
1659851 CA-ATTCTCCTC-TTCAGGATAAATGATATTGATGATTTTATTTTGCATGGATATCTTTTCTTTA
645 CACATTCTCCTCATT-AGGATAAATGATATTGATGATTTTATTTTGCATGGAAATCTTTTCTTTA
** * ** *
1659914 AGTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAACAAACCAAGCTTCGATTCTCATAATAGCC
709 CCTTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCTTCGATTCTCATAATAGTC
* * * * * * *
1659979 CCCATTCCTTTTAAGATTGGGAAGCGAACACACATTCACTTTTTTAGGATACATGAAATTGATGC
774 TCCATTCTTTTTAAGATTGGGAAGCAAAAACACATTCCCTTTATTAGGATACATGACATTGATGC
* * *
1660044 TTTGGTGTTGTAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAAAATCAAAGTTTATCTCTTAAA
839 TTTGGTGTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAA
* *
1660109 AACGACAAACATGAATACTCATACTAATCCTCATTCTTTTCAGGATTAGG
904 TACGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGG
*** * *
1660159 CACCACAAATGCAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAGGAAAGGCT
1 CACCACAAACATAGTCTTCTTATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCT
* * * *
1660224 TTTTTCCTACCAATTTTTGTAAAGTCTAAGTTTGTGACTTAAATGAGACAAACATGGATTCTAGT
66 TTTTTCCAACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGT
* * * *
1660289 AATGATCTTTATTCATTTGGTGATTTGGCACTATAAACACATTCTCCTCATTAGGATGAACGATA
131 AATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
* *
1660354 TTGATGATTTTCTTTTGCATGGAAATCTTCTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC
196 TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTAGCCCTATTTTCCTTAAAATCAAAGTTCATC
* **
1660419 CTTTAAATATGGCAAGCATCGATTCTCTTAATAGTCTCCATTCTTTTCAAGATTGAAAAGCAAAA
261 CTTTAAATATGGCAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAAGCAAAA
* *
1660484 ACACATTCCTTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCATTC
326 ACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTC
* * * ** *
1660549 CACCGTTTTTGACAGAATCAAAGTTTGTCTCTTAAATAAGACAAACACGAGCACTTATACTAATC
391 CACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATACTAATC
* * * *
1660614 CCCATTCATTTCAGGATTAGGCATCATAAACATAGTCTTCTTATTAGGATACATTATATTGAAGC
456 CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTATTAGGATACATCATATTGATGC
* *
1660679 TTTGGTTTCGCAAGAAAGGCTTTTTTTTCACCCCAATTTTTGTGAAGTCTAAGTTCGTGCCTCTA
521 TTTGGTTTCGCAAGAAAGGC-TTTTTTTCACACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCTA
* * * * * * * *
1660744 ATGAGATACATATGGATTCTAGTAAAGATTTTTTTTCATTTTTTGAATAGGTACTATAAACA-GT
585 ATGAGATAAACATGGATTCTAGTAAAGATCTTTATTCATTTTGTGATTAGGCACTATAAACACAT
* * * *
1660808 TCTCCTC-TTCAAGATAAATGATATTAATGATTTTATTTTGCTTGGAAATCTTTTCTTTACGTTA
650 TCTCCTCATT-AGGATAAATGATATTGATGATTTTATTTTGCATGGAAATCTTTTCTTTACCTTA
* ** * *
1660872 TTTTCCTTAAAATCAAAGTTCATCCTTTAAACAAACCAAGCTTCGATTCTCATAATAGCCCCCAT
714 TTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCTTCGATTCTCATAATAGTCTCCAT
* * * * * *
1660937 TCCTTTTAAGATTGGGAATCAAACACACATTCACTTTTTTAGGATACATGAAATTGATGCTTTGG
779 TCTTTTTAAGATTGGGAAGCAAAAACACATTCCCTTTATTAGGATACATGACATTGATGCTTTGG
* * * *
1661002 TGTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTCGATAAAATCAAAGTTTATCTCTTAAAAACGA
844 TGTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGA
*
1661067 CAAACATGAATACTCATACTAATCCTCATTCTTTTCAGGATTAGG
909 CAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGG
*** * *
1661112 CACCACAAATGCAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAGGAAAGGCT
1 CACCACAAACATAGTCTTCTTATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCT
* * * * *
1661177 TTTTTCCTACCAATTTTTGTAAAGTCTATGTTTGTGACTTAAATGAGACAAACATGGATTCTAGT
66 TTTTTCCAACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGT
* * * *
1661242 AATGATCTTTATTCATTTGGTGATTTGGCACTATAAACACATTCTCCTCATTAGGATGAACGATA
131 AATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
* *
1661307 TTGATGATTTTCATTTGCATGGAAATCTTCTCTTAGCCCTATTTTCCTTAAAATCAAAGTTCATC
196 TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTAGCCCTATTTTCCTTAAAATCAAAGTTCATC
* **
1661372 CTTTAAATATGGCAAGCATCGATTCTCTTAATAGTCTCCATTCTTTTCAAGATTGAAAAGCAAAA
261 CTTTAAATATGGCAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAAGCAAAA
*
1661437 ACACATTCCTTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTC
326 ACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTC
* * ** * *
1661502 CACCGTTTTTGACAGAATCAAAGTTTGTCTCTTAAATAAGACAAACACAAACACTTATACTAATC
391 CACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATACTAATC
* * * *
1661567 CCCATTCATTTCAGGATTAGGCATCATAAACATAGTCTTCTTATTAGGATACATTATATTGAAGC
456 CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTATTAGGATACATCATATTGATGC
*
1661632 TTTGGTTTCGCAAGAAAGGCTTTTTTTCACACCAATTTTTGTAAACTCTAAGTTCGTGCCTCTAA
521 TTTGGTTTCGCAAGAAAGGCTTTTTTTCACACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCTAA
* * * ** *
1661697 CGAGATAAACATGGATTCTAGAAAAGATCTTTTTTCATTTTGTGATTAGGTGCTACAAACA-ATT
586 TGAGATAAACATGGATTCTAGTAAAGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATT
* * *
1661761 CTCCTC-TTCAGGATAAATGATATTGATGATTTTATTTTGCGTGGAAATCTTTTCTTCACGTTAT
651 CTCCTCATT-AGGATAAATGATATTGATGATTTTATTTTGCATGGAAATCTTTTCTTTACCTTAT
* ** * *
1661825 TTTCCTTAAAATCAAAGTTCATCCTTTAAACAAACCAAGCTTCGATTCACATAATAGCCTCCATT
715 TTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCTTCGATTCTCATAATAGTCTCCATT
* * * * *
1661890 CTTTTTTAGATTGGGAAGCGAACACACATTCCCTTTATTAGGATCCATGAAATTGATGCTTTGGT
780 CTTTTTAAGATTGGGAAGCAAAAACACATTCCCTTTATTAGGATACATGACATTGATGCTTTGGT
* * * *
1661955 GTCATAGGAAAAGCTTTTCTTTCCACCTTTTTTTATAGAATCAAAGTTTGTCTCTTAAATACGAC
845 GTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGAC
1662020 AAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGG
910 AAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGG
* * * * *
1662064 CACCATAAACGTAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGCTTCGCAGGAAAGGCT
1 CACCACAAACATAGTCTTCTTATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCT
** * *
1662129 TTTTTCTTACCAATTTTTGTAAAGTCTAAGTTCATGACTCAAATGAGACAAACATGGATTCTAGT
66 TTTTTCCAACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGT
* * * * *
1662194 AATGATCTTCATTC-TTTTGGTCATTAGGCGCTATAAACACATTCTCCTTAATAGGATAAATGAT
131 AATGATCTTTATTCATTTT-GTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGAT
* * * *
1662258 ATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCTAAGCTCAT
195 ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTAGCCCTATTTTCCTTAAAATCAAAGTTCAT
* * * * * * * * * *
1662323 CTTTTAAATAAGGCAAGCCTTGATTCTCGTAA-CGATCTCCATTCTTTTCATGATTTGGATGCCA
260 CCTTTAAATATGGCAAGCATCGATTCTCATAATAG-TCTCCATTCTTTTCAAGATTGGGAAGCAA
* * * * * *
1662387 AAACACATTCCCTTCATTAGGGTAAATGACATTGATGCTTTGGGGTTGCAAGAAAAGCTTTTCTT
324 AAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTT
* * *
1662452 TCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAGATATGACAAACATGAATACTCATACTAG
389 TCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATACTAA
* * * * * * * *
1662517 TCCCCGTTCTTTTCAAGATTAGGCACCATAAGCATAGTCTTCTCATTCGAATGCATCATAATGAT
454 TCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTATTAGGATACATCATATTGAT
** * * *
1662582 GCTTTTATTTTGCAAGAAAGGC-TTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCT-T
519 GCTTTGGTTTCGCAAGAAAGGCTTTTTTTCACACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCT
* * ** *
1662645 AAATGAGACAAACATTGATTCTAGTAAAGATCTTCGTTCATTTTGTGATTAGGTACT-TAAACAC
584 -AATGAGATAAACATGGATTCTAGTAAAGATCTTTATTCATTTTGTGATTAGGCACTATAAACAC
* * *
1662709 ATTCTGCTCATTAGAATAAATGATATTGATGATTTTATTTTGCATGGAAATCTTTTCTTTACCCT
648 ATTCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGGAAATCTTTTCTTTACCTT
* * * * *
1662774 ATTTTTCTTAGAATCAAAGTTCTTCCTTTAAATAAGGCAAGCATCGATTCTCATAACAGTCTCCA
713 ATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCTTCGATTCTCATAATAGTCTCCA
* * * *
1662839 TTCTTTTCAAGATTGAGAAGCAAAAACACATTCCCTTCATTAGGATGCATGACATTGATGCTTTG
778 TTCTTTTTAAGATTGGGAAGCAAAAACACATTCCCTTTATTAGGATACATGACATTGATGCTTTG
* * *
1662904 GTGTCGTAAGAAAAGCTTTTCTTTCTACCGTTTTTGACAGAAT-AAAGGTTTGTCTCTTAAATAT
843 GTGTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAA-GTTTGTCTCTTAAATAC
* * *
1662968 GACAAACAAGAATACTGATACTAATCACCATT-TTCTTCAGGATTAGG
907 GACAAACATGAATACTCATACTAATCCCCATTCTT-TTCAGGATTAGG
* *
1663015 TC-CCATAAACATAGTCTTCTTATTAGGATACA-CGATATTGATGCTTTGGTTTTGCAAGAAAGG
1 -CACCACAAACATAGTCTTCTTATTAGGATACATC-ATATTGATGCTTTGGTTTCGCAAGAAAGG
** * * * * **
1663078 CTTTTTTCCCCCCAACTTTTATAAAGTTTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCCG
64 CTTTTTTCCAACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTA
* * * * *
1663143 GTAATGATATATATTCATTTGGTGATTTGGCACTATAAACTCATTCTCCTCATTAGGATAAATGA
129 GTAATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGA
1663208 TATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTAGCCCTATT
194 TATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTAGCCCTATT
1663253 GATGACAACC
Statistics
Matches: 11146, Mismatches: 1354, Indels: 285
0.87 0.11 0.02
Matches are distributed among these distances:
949 18 0.00
950 117 0.01
951 896 0.08
952 1211 0.11
953 2784 0.25
954 1576 0.14
955 1475 0.13
956 772 0.07
957 1715 0.15
958 572 0.05
959 10 0.00
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.37
Consensus pattern (953 bp):
CACCACAAACATAGTCTTCTTATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCT
TTTTTCCAACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGT
AATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTAGCCCTATTTTCCTTAAAATCAAAGTTCATC
CTTTAAATATGGCAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAAGCAAAA
ACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTC
CACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATACTAATC
CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTATTAGGATACATCATATTGATGC
TTTGGTTTCGCAAGAAAGGCTTTTTTTCACACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCTAA
TGAGATAAACATGGATTCTAGTAAAGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATT
CTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGGAAATCTTTTCTTTACCTTATT
TTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCTTCGATTCTCATAATAGTCTCCATTC
TTTTTAAGATTGGGAAGCAAAAACACATTCCCTTTATTAGGATACATGACATTGATGCTTTGGTG
TCGTAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACA
AACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGG
Found at i:1651961 original size:476 final size:476
Alignment explanation
Indices: 1649656--1663243 Score: 17453
Period size: 476 Copynumber: 28.5 Consensus size: 476
1649646 AACATGTATA
* * * * * *
1649656 CACCATAAACATAGTCTTCTCATTCGAATACATCATAATGATGCTTTGGTTTTGCAAGAAAGGCT
1 CACCACAAACATAGTCTTCTTATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCT
* * * * * *
1649721 TTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTACCTCAAATGGGACAAACAAGGATTCCAGT
66 TTTTTCCAACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGT
* * * * *
1649786 AAAGATCTTCATTCATTTTATGATTAGGTACTATAAACACATTCTACTCATTAGGATAAATGATA
131 AATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
* * *
1649851 TTGATGATTTTATTTTGCATGGAAATCTTTTCTTTACCCTATTTTTCTTAAAATCAAAGTTCATC
196 TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACCTTATTTTCCTTAAAATCAAAGTTCATC
* * * * *
1649916 CTTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCAATTCTTCTCAAGATTGAGAAGCAAAA
261 CTTTAAATAAGGCAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAAGCAAAA
** * * * *
1649981 ACACATTCCCCTCATTAGGATGCGTGACCTTGATGCTTTGGTGCCGTAAGAAGAAAAGCTTTTCT
326 ACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGT---AAGAAAAGCTTTTCT
* * * * * * *
1650046 TTCCACCATTTTTGACAGAATGAAGGTTTGTCTCTTAAATACGACAAACAAGAATATTGATACTA
388 TTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATACTA
**
1650111 ATCCCTGTT-TTCTTCAGGATTAGG
453 ATCCCCATTCTT-TTCAGGATTAGG
* * *
1650135 TACCATAAACATAGTCTTCTTATTAGGATACA-CGATATTGATGCTTTGGTTTTGCAAGAAAGGC
1 CACCACAAACATAGTCTTCTTATTAGGATACATC-ATATTGATGCTTTGGTTTCGCAAGAAAGGC
* ** * *
1650199 TTTCTTCCCCCCAACTTTTATAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAG
65 TTTTTTCCAACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAG
* * * * * *
1650264 TGATGATCTTCATACATTTGGTGATTTGGCACTATAAACACATTCTACTCATTAGGATAAATGAT
130 TAATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGAT
* * *
1650329 ATTGATGATTTTATTTTGCATGGAAATCTTTTCTTTACCCTATTTTTCTTAAAATCAAAGTTCAT
195 ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACCTTATTTTCCTTAAAATCAAAGTTCAT
* * * * *
1650394 CCTTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCAATTCTTCTCAAGATTGAGAAGCAAA
260 CCTTTAAATAAGGCAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAAGCAAA
** * * *
1650459 AACACATTCCCCTCATTAGGATACGTGACCTTGATGCTTTGGTGCCGTAAGAAGAAAAGCTTTTC
325 AACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGT---AAGAAAAGCTTTTC
* * * * * * *
1650524 TTTCCACCATTTTTGACAGAATGAAGGTTTGTCTCTTAAATACGACAAACAAGAATATTGATACT
387 TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATACT
**
1650589 AATCCCTGTT-TTCTTCAGGATTAGG
452 AATCCCCATTCTT-TTCAGGATTAGG
* * *
1650614 TACCATAAACATAGTCTTCTTATTAGGATACA-CGATATTGATGCTTTGGTTTTGCAAGAAAGGC
1 CACCACAAACATAGTCTTCTTATTAGGATACATC-ATATTGATGCTTTGGTTTCGCAAGAAAGGC
* ** * *
1650678 TTTCTTCCCCCCAACTTTTATAAAGTCTAAGTTCGTGCCTCAAATGAGACAAA-ATGGATTCTAG
65 TTTTTTCCAACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAG
* * * * * *
1650742 TGATGATCTTCATACATTTGGTGATTTGGCACTATAAACACATTCTCCTCATTAGGATGAATGAT
130 TAATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGAT
* * * * * *
1650807 ATTGATCATTTTCTTTTGTAGGGAAATCTTTTC-TTAGCCCTACTTTCCTTAAAACCAAAGTTCA
195 ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTA-CCTTATTTTCCTTAAAATCAAAGTTCA
* * * * *
1650871 TCTTTTAAATATGGCAAGCATCGATTCTCGTAATAGTCTCCATT-TGTTT-AACATTGGGAAGCG
259 TCCTTTAAATAAGGCAAGCATCGATTCTCATAATAGTCTCCATTCT-TTTCAAGATTGGGAAGCA
* * *
1650934 AAAACACATTCCCTTCATTAGGCTACATGACATTGATGCTTTGGTGTGGTAAGAAAAGCTTTTCT
323 AAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCT
* * *
1650999 TTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAAAACTTATACTA
388 TTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATACTA
* *
1651064 ATCCCCGTTCTTTTTAGGATTAGG
453 ATCCCCATTCTTTTCAGGATTAGG
* * * *
1651088 CAGCATAAACTTAGTCTTCTTATTAGGATACATCATATTGAAGCTTTGGTTTCGCAAGAAAGGCT
1 CACCACAAACATAGTCTTCTTATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGC-
* * ** * *
1651153 TTTTTTTCACACCCATTTTTGTAAAGTCTAAGTTCGTGCCTGTAGTGAGATAAACATGGATTCTA
65 TTTTTTCCA-ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTA
* * * * * ** *
1651218 GTAAAGAGCTTTTTTCATTTTTTGAATAGGTGCTATAAACA-ATTCTCCTCTTTAGGATAAATGA
129 GTAATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGA
* * * ** **
1651282 TACTGATGATTTTATTTTGCATGGAAATCTTTTCTTTACGTTATTTTCCTTAAAAAAAAAGCACA
194 TATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACCTTATTTTCCTTAAAATCAAAGTTCA
* ** * * * * * * *
1651347 TCCTTTAAACAAACCAAGCTTCGATTCTTATAATAGCCCCCATTCTTTTTAAGATTAGGAAGCGA
259 TCCTTTAAATAAGGCAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAAGCAA
* * * *
1651412 ACACACATTCCCTTT-ATTAGGATACATGAAATTAATGCTTTGGTGTCATAAGAAAAGCTTTTCT
324 AAACACATT-CCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCT
* * *
1651476 TTCCACCGTTTTCGATAAAATCAAAGTTTGTCTCTCAAATACGACAAACATGAATACTCATACTA
388 TTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATACTA
*
1651541 ATCCCCATTCTTTTCAAGATTAGG
453 ATCCCCATTCTTTTCAGGATTAGG
* * * *
1651565 CACCACAAATATAGTCTTCTCT-TTAGGATACATCATAATGATGCTTTGGTTTTGCGAGAAAGGC
1 CACCACAAACATAGTCTTCT-TATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGC
*
1651629 TTTTTTCCAACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATAAGACAAACATGGATTCTAG
65 TTTTTTCCAACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAG
* * * * * * * *
1651694 TAAAGATCTTTGTTCATTTTCTGATTAGGTACTACAAACACAATCTGCTCATTAGGATAAACGAT
130 TAATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGAT
* * * *
1651759 ATTGATGATTTTATTTTGCATGGAAATCTTTTCTTTACCCTATTTTTCTTAAAATCAAACTTCAT
195 ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACCTTATTTTCCTTAAAATCAAAGTTCAT
* * * *
1651824 CCTTTAAATAAGGCAAGCATCAATTCTCATAACAGTTTCCA-TCTTTTCCAAGATTGAGAAGCAA
260 CCTTTAAATAAGGCAAGCATCGATTCTCATAATAGTCTCCATTCTTTT-CAAGATTGGGAAGCAA
* * * *
1651888 AAACATATTCCTTTCATTAGGATGCAAGATATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTT
324 AAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTT
* *
1651953 TCCACCGTTTTTGACAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCAAACTAA
389 TCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATACTAA
* *
1652018 TCCCCGTTCCTTTCAGGATTAGG
454 TCCCCATTCTTTTCAGGATTAGG
* * * * * * *
1652041 CACCA-TAACGTAGTCTCCTCATTAGGATACATCATATTGACGCTTTGGTTTTGCAGGAAAGGCT
1 CACCACAAACATAGTCTTCTTATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCT
* * * * *
1652105 TTTTTCCTACCAATTTTTTTGAAGTCTAAGTTCATGACTCAAATGAGACAAACATGGATTCTAGT
66 TTTTTCCAACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGT
* * * * * *
1652170 AATGATATTCATTC-TTTGGTCATTAGACACTATAAACACATTCTCCTCAATAGGATAAATGATA
131 AATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
*
1652234 TTGATGATTTTCTTTTACAATGGAAATCTTTTC-TTAGCCTTATTTTCCTTAAAATCAAAGTTCA
196 TTGATGATTTTCTTTTGC-ATGGAAATCTTTTCTTTA-CCTTATTTTCCTTAAAATCAAAGTTCA
* * * *
1652298 TCTTTTAAATATGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTTAAGATTGGGAAGCAA
259 TCCTTTAAATAAGGCAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAAGCAA
*
1652363 AAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTT
324 AAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTC-T
* *
1652428 TTCCACCATTTTTGATAGAATCAAAGTTTATCTCTTAAATACGACAAACATGAATACTCATACTA
388 TTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATACTA
* * *
1652493 ATCCCCGTTCTTTTTAGGATTAGA
453 ATCCCCATTCTTTTCAGGATTAGG
* ** *
1652517 TAGCGTC-AACATAGTCTTCTTACTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGC
1 CA-CCACAAACATAGTCTTCTTATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGC
* * * * *
1652581 TTTTTTTTCACACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCTAATGAGATACATATGGATTCT
65 -TTTTTTCCA-ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCT
* * * * * *
1652646 AGTAAAGATCTTTTTTCATTTTTTGAATAGGTACTATGAACA-ATTCTCCTC-TTCAGGATAAAT
128 AGTAATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATT-AGGATAAAT
* * **
1652709 GATATTGATGATTTTATTTTGCATGGATATCTTTTCTTTAAGTTATTTTCCTTAAAATCAAAGTT
192 GATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACCTTATTTTCCTTAAAATCAAAGTT
* ** * * *
1652774 CATCCTTTAAACAAACCAAGCTTCGATTCTCATAATAGCCCCCATTCCTTTT-AAGATTGGGAAG
257 CATCCTTTAAATAAGGCAAGCATCGATTCTCATAATAGTCTCCATT-CTTTTCAAGATTGGGAAG
* * * * * *
1652838 CGAACACACATTCACTTT-TTTAGGATACATGAAATTGATGCTTTGATGTTGTAAGAAAAGCTTT
321 CAAAAACACATTC-CTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTT
* * *
1652902 TCTTTCCACCGTTTTTGATAAAATCAAAGTTTATCTCTTAAAAACGACAAACATGAATACTCATA
385 TCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATA
* *
1652967 CTAATCCTCATTCTTTTCAAGATTAGG
450 CTAATCCCCATTCTTTTCAGGATTAGG
*** * *
1652994 CACCACAAATGCAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAGGAAAGGCT
1 CACCACAAACATAGTCTTCTTATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCT
* * * *
1653059 TTTTTCCTACCAATTTTTGTAAAGTCTAAGTTTGTGACTTAAATGAGACAAACATGGATTCTAGT
66 TTTTTCCAACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGT
* * * *
1653124 AATGATCTTTATTCATTTGGTGATTTGGCACTATAAACACATTCTCCTCATTAGGATGAACGATA
131 AATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
* *
1653189 TTGATGATTTTCTTTTGCATGGAAATCTTCTC-TTAGCCCTATTTTCCTTAAAATCAAAGTTCAT
196 TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTA-CCTTATTTTCCTTAAAATCAAAGTTCAT
* * **
1653253 CCTTTAAATATGGCAAGCATCGATTCTCTTAATAGTCTCCATTCTTTTCAAGATTGAAAAGCAAA
260 CCTTTAAATAAGGCAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAAGCAAA
*
1653318 AACACATTCCTTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTT
325 AACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTT
* * * ** *
1653383 CCACCGTTTTTGACAGAATCAAAGTTTGTCTCTTAAATAAGACAAACACGAGCACTTATACTAAT
390 CCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATACTAAT
*
1653448 CCCCATTCATTTCAGGATTAGG
455 CCCCATTCTTTTCAGGATTAGG
* * * *
1653470 CATCATAAACATAGTCTTCTTATTAGGATACATTATATTGAAGCTTTGGTTTCGCAAGAAAGGCT
1 CACCACAAACATAGTCTTCTTATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGC-
* * * * * * *
1653535 TTTTTTTCACCCCAATTTTTGTGAAGTCTAAGTTCGTGCCTCTAATGAGATACATATGGATTCTA
65 TTTTTTCCA-ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTA
* * * * *
1653600 GTAATGATATTCATTC-TTTTGGTCATTAGACACTATAAACACATTCTCCTCAATAGGATAAATG
129 GTAATGATCTTTATTCATTTT-GTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATG
*
1653664 ATATTGATGATTTTCTTTTACAATGGAAATCTTTTC-TTAGCCTTATTTTCCTTAAAATCAAAGT
193 ATATTGATGATTTTCTTTTGC-ATGGAAATCTTTTCTTTA-CCTTATTTTCCTTAAAATCAAAGT
* * * *
1653728 TCATCTTTTAAATATGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTTAAGATTGGGAAG
256 TCATCCTTTAAATAAGGCAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAAG
*
1653793 CAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTT
321 CAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTT
* *
1653858 CTTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCATA
386 C-TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATA
* * * *
1653923 CTAATCCTCGTTCTTTTTAGGATTAGA
450 CTAATCCCCATTCTTTTCAGGATTAGG
* ** *
1653950 TAGCGTC-AACATAGTCTTCTTACTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGC
1 CA-CCACAAACATAGTCTTCTTATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGC
* * * * *
1654014 TTTTTTTTCACACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCTAATGAGATACATATGGATTCT
65 -TTTTTTCCA-ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCT
* * * * * *
1654079 AGTAAAGATCTTTTTTCATTTTTTGAATAGGTACTATGAACA-ATTCTCCTC-TTCAGGATAAAT
128 AGTAATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATT-AGGATAAAT
* * **
1654142 GATATTGATGATTTTATTTTGCATGGATATCTTTTCTTTAAGTTATTTTCCTTAAAATCAAAGTT
192 GATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACCTTATTTTCCTTAAAATCAAAGTT
* ** * * *
1654207 CATCCTTTAAACAAACCAAGCTTCGATTCTCATAATAGCCCCCATTCCTTTT-AAGATTGGGAAG
257 CATCCTTTAAATAAGGCAAGCATCGATTCTCATAATAGTCTCCATT-CTTTTCAAGATTGGGAAG
* * * * *
1654271 CGAACACACATTCACTTT-TTTAGGATACATGAAATTGATGCTTTGGTGTTGTAAGAAAAGCTTT
321 CAAAAACACATTC-CTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTT
* * *
1654335 TCTTTCCACCGTTTTTGATAAAATCAAAGTTTATCTCTTAAAAACGACAAACATGAATACTCATA
385 TCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATA
*
1654400 CTAATCCTCATTCTTTTCAGGATTAGG
450 CTAATCCCCATTCTTTTCAGGATTAGG
*** * * *
1654427 CACCACAAATGCAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAGGAAACGCT
1 CACCACAAACATAGTCTTCTTATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCT
* * * *
1654492 TTTTTCCTACCAATTTTTGTAAAGTCTAAGTTTGTGACTTAAATGAGACAAACATGGATTCTAGT
66 TTTTTCCAACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGT
* * * *
1654557 AATGATCTTTATTCATTTGGTGATTTGGCACTATAAACACATTCTCCTCATTAGGATGAACGATA
131 AATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
* *
1654622 TTGATGATTTTCTTTTGCATGGAAATCTTCTC-TTAGCCCTATTTTCCTTAAAATCAAAGTTCAT
196 TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTA-CCTTATTTTCCTTAAAATCAAAGTTCAT
* * * **
1654686 CCTTTAAATATGGCAAGCATTGATTCTCTTAATAGTCTCCATTCTTTTCAAGATTGAAAAGCAAA
260 CCTTTAAATAAGGCAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAAGCAAA
*
1654751 AACACATTCCTTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTT
325 AACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTT
* * * ** *
1654816 CCACCGTTTTTGACAGAATCAAAGTTTGTCTCTTAAATAAGACAAACACGAGCACTTATACTAAT
390 CCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATACTAAT
*
1654881 CCCCATTCATTTCAGGATTAGG
455 CCCCATTCTTTTCAGGATTAGG
* * * *
1654903 CATCATAAACATAGTCTTCTTATTAGGATACATTATATTGAAGCTTTGGTTTCGCAAGAAAGGCT
1 CACCACAAACATAGTCTTCTTATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGC-
* * * * * * *
1654968 TTTTTTTCACCCCAATTTTTGTGAAGTCTAAGTTCGTGCCTCTAATGAGATACATATGGATTCTA
65 TTTTTTCCA-ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTA
* * * * *
1655033 GTAATGATATTCATTC-TTTTGGTCATTAGACACTATAAACACATTCTCCTCAATAGGATAAATG
129 GTAATGATCTTTATTCATTTT-GTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATG
*
1655097 ATATTGATGATTTTCTTTTACAATGGAAATCTTTTC-TTAGCCTTATTTTCCTTAAAATCAAAGT
193 ATATTGATGATTTTCTTTTGC-ATGGAAATCTTTTCTTTA-CCTTATTTTCCTTAAAATCAAAGT
* * * *
1655161 TCATCTTTTAAATATGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTTAAGATTGGGAAG
256 TCATCCTTTAAATAAGGCAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAAG
*
1655226 CAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTT
321 CAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTT
* *
1655291 CTTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCATA
386 C-TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATA
* * *
1655356 CTAATCCCCGTTCTTTTTAGGATTAGA
450 CTAATCCCCATTCTTTTCAGGATTAGG
* ** *
1655383 TAGCGTC-AACATAGTCTTCTTACTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGC
1 CA-CCACAAACATAGTCTTCTTATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGC
* * * * *
1655447 TTTTTTTTCACACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCTAATGAGATACATATGGATTCT
65 -TTTTTTCCA-ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCT
* * * * * *
1655512 AGTAAAGATCTTTTTTCATTTTTTGAATAGGTACTATGAACA-ATTCTCCTC-TTCAGGATAAAT
128 AGTAATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATT-AGGATAAAT
* * **
1655575 GATATTGATGATTTTATTTTGCATGGATATCTTTTCTTTAAGTTATTTTCCTTAAAATCAAAGTT
192 GATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACCTTATTTTCCTTAAAATCAAAGTT
* ** * * *
1655640 CATCCTTTAAACAAACCAAGCTTCGATTCTCATAATAGCCCCCATTCCTTTT-AAGATTGGGAAG
257 CATCCTTTAAATAAGGCAAGCATCGATTCTCATAATAGTCTCCATT-CTTTTCAAGATTGGGAAG
* * * * *
1655704 CGAACACACATTCACTTT-TTTAGGATACATGAAATTGATGCTTTGGTGTTGTAAGAAAAGCTTT
321 CAAAAACACATTC-CTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTT
* * *
1655768 TCTTTCCACCGTTTTTGATAAAATCAAAGTTTATCTCTTAAAAACGACAAACATGAATACTCATA
385 TCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATA
*
1655833 CTAATCCTCATTCTTTTCAGGATTAGG
450 CTAATCCCCATTCTTTTCAGGATTAGG
*** * * *
1655860 CACCACAAATGCAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAGGAAACGCT
1 CACCACAAACATAGTCTTCTTATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCT
* * * *
1655925 TTTTTCCTACCAATTTTTGTAAAGTCTAAGTTTGTGACTTAAATGAGACAAACATGGATTCTAGT
66 TTTTTCCAACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGT
* * * *
1655990 AATGATCTTTATTCATTTGGTGATTTGGCACTATAAACACATTCTCCTCATTAGGATGAACGATA
131 AATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
* *
1656055 TTGATGATTTTCTTTTGCATGGAAATCTTCTC-TTAGCCCTATTTTCCTTAAAATCAAAGTTCAT
196 TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTA-CCTTATTTTCCTTAAAATCAAAGTTCAT
* * * **
1656119 CCTTTAAATATGGCAAGCATTGATTCTCTTAATAGTCTCCATTCTTTTCAAGATTGAAAAGCAAA
260 CCTTTAAATAAGGCAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAAGCAAA
*
1656184 AACACATTCCTTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTT
325 AACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTT
* * * ** * *
1656249 CCACCGTTTTTGACAGAATCAAAGTTTGTCTCTTAAATAAGACAAACACGAGCACTTATTCTAAT
390 CCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATACTAAT
*
1656314 CCCCATTCATTTCAGGATTAGG
455 CCCCATTCTTTTCAGGATTAGG
* * * *
1656336 CATCATAAACATAGTCTTCTTATTAGGATACATTATATTGAAGCTTTGGTTTCGCAAGAAAGGCT
1 CACCACAAACATAGTCTTCTTATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGC-
* * * * * * *
1656401 TTTTTTTCACCCCAATTTTTGTGAAGTCTAAGTTCGTGCCTCTAATGAGATACATATGGATTCTA
65 TTTTTTCCA-ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTA
* * * * *
1656466 GTAATGATATTCATTC-TTTTGGTCATTAGACACTATAAACACATTCTCCTCAATAGGATAAATG
129 GTAATGATCTTTATTCATTTT-GTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATG
*
1656530 ATATTGATGATTTTCTTTTACAATGGAAATCTTTTC-TTAGCCTTATTTTCCTTAAAATCAAAGT
193 ATATTGATGATTTTCTTTTGC-ATGGAAATCTTTTCTTTA-CCTTATTTTCCTTAAAATCAAAGT
* * * *
1656594 TCATCTTTTAAATATGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTTAAGATTGGGAAG
256 TCATCCTTTAAATAAGGCAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAAG
*
1656659 CAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTT
321 CAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTT
* *
1656724 CTTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCATA
386 C-TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATA
* * *
1656789 CTAATCCCCGTTCTTTTTAGGATTAGA
450 CTAATCCCCATTCTTTTCAGGATTAGG
* ** *
1656816 TAGCGTC-AACATAGTCTTCTTACTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGC
1 CA-CCACAAACATAGTCTTCTTATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGC
* * * * *
1656880 TTTTTTTTCACACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCTAATGAGATACATATGGATTCT
65 -TTTTTTCCA-ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCT
* * * * * *
1656945 AGTAAAGATCTTTTTTCATTTTTTGAATAGGTACTATGAACA-ATTCTCCTC-TTCAGGATAAAT
128 AGTAATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATT-AGGATAAAT
* * **
1657008 GATATTGATGATTTTATTTTGCATGGATATCTTTTCTTTAAGTTATTTTCCTTAAAATCAAAGTT
192 GATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACCTTATTTTCCTTAAAATCAAAGTT
* ** * * *
1657073 CATCCTTTAAACAAACCAAGCTTCGATTCTCATAATAGCCCCCATTCCTTTT-AAGATTGGGAAG
257 CATCCTTTAAATAAGGCAAGCATCGATTCTCATAATAGTCTCCATT-CTTTTCAAGATTGGGAAG
* * * * *
1657137 CGAACACACATTCACTTT-TTTAGGATACATGAAATTGATGCTTTGGTGTTGTAAGAAAAGCTTT
321 CAAAAACACATTC-CTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTT
* * *
1657201 TCTTTCCACCGTTTTTGATAAAATCAAAGTTTATCTCTTAAAAACGACAAACATGAATACTCATA
385 TCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATA
*
1657266 CTAATCCTCATTCTTTTCAGGATTAGG
450 CTAATCCCCATTCTTTTCAGGATTAGG
*** * * *
1657293 CACCACAAATGCAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAGGAAACGCT
1 CACCACAAACATAGTCTTCTTATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCT
* * * *
1657358 TTTTTCCTACCAATTTTTGTAAAGTCTAAGTTTGTGACTTAAATGAGACAAACATGGATTCTAGT
66 TTTTTCCAACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGT
* * * *
1657423 AATGATCTTTATTCATTTGGTGATTTGGCACTATAAACACATTCTCCTCATTAGGATGAACGATA
131 AATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
* *
1657488 TTGATGATTTTCTTTTGCATGGAAATCTTCTC-TTAGCCCTATTTTCCTTAAAATCAAAGTTCAT
196 TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTA-CCTTATTTTCCTTAAAATCAAAGTTCAT
* * * **
1657552 CCTTTAAATATGGCAAGCATTGATTCTCTTAATAGTCTCCATTCTTTTCAAGATTGAAAAGCAAA
260 CCTTTAAATAAGGCAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAAGCAAA
*
1657617 AACACATTCCTTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTT
325 AACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTT
* * * ** *
1657682 CCACCGTTTTTGACAGAATCAAAGTTTGTCTCTTAAATAAGACAAACACGAGCACTTATACTAAT
390 CCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATACTAAT
*
1657747 CCCCATTCATTTCAGGATTAGG
455 CCCCATTCTTTTCAGGATTAGG
* * * *
1657769 CATCATAAACATAGTCTTCTTATTAGGATACATTATATTGAAGCTTTGGTTTCGCAAGAAAGGCT
1 CACCACAAACATAGTCTTCTTATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGC-
* * * * * * *
1657834 TTTTTTTCACCCCAATTTTTGTGAAGTCTAAGTTCGTGCCTCTAATGAGATACATATGGATTCTA
65 TTTTTTCCA-ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTA
* * * * *
1657899 GTAATGATATTCATTC-TTTTGGTCATTAGACACTATAAACACATTCTCCTCAATAGGATAAATG
129 GTAATGATCTTTATTCATTTT-GTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATG
*
1657963 ATATTGATGATTTTCTTTTACAATGGAAATCTTTTC-TTAGCCTTATTTTCCTTAAAATCAAAGT
193 ATATTGATGATTTTCTTTTGC-ATGGAAATCTTTTCTTTA-CCTTATTTTCCTTAAAATCAAAGT
* * * *
1658027 TCATCTTTTAAATATGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTTAAGATTGGGAAG
256 TCATCCTTTAAATAAGGCAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAAG
*
1658092 CAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTT
321 CAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTT
* *
1658157 CTTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCATA
386 C-TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATA
* * *
1658222 CTAATCCCCGTTCTTTTTAGGATTAGA
450 CTAATCCCCATTCTTTTCAGGATTAGG
* ** *
1658249 TAGCGTC-AACATAGTCTTCTTACTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGC
1 CA-CCACAAACATAGTCTTCTTATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGC
* * * * *
1658313 TTTTTTTTCACACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCTAATGAGATACATATGGATTCT
65 -TTTTTTCCA-ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCT
* * * * * *
1658378 AGTAAAGATCTTTTTTCATTTTTTGAATAGGTACTATGAACA-ATTCTCCTC-TTCAGGATAAAT
128 AGTAATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATT-AGGATAAAT
* * **
1658441 GATATTGATGATTTTATTTTGCATGGATATCTTTTCTTTAAGTTATTTTCCTTAAAATCAAAGTT
192 GATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACCTTATTTTCCTTAAAATCAAAGTT
* ** * * *
1658506 CATCCTTTAAACAAACCAAGCTTCGATTCTCATAATAGCCCCCATTCCTTTT-AAGATTGGGAAG
257 CATCCTTTAAATAAGGCAAGCATCGATTCTCATAATAGTCTCCATT-CTTTTCAAGATTGGGAAG
* * * * *
1658570 CGAACACACATTCACTTT-TTTAGGATACATGAAATTGATGCTTTGGTGTTGTAAGAAAAGCTTT
321 CAAAAACACATTC-CTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTT
* * *
1658634 TCTTTCCACCGTTTTTGATAAAATCAAAGTTTATCTCTTAAAAACGACAAACATGAATACTCATA
385 TCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATA
*
1658699 CTAATCCTCATTCTTTTCAGGATTAGG
450 CTAATCCCCATTCTTTTCAGGATTAGG
*** * * *
1658726 CACCACAAATGCAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAGGAAACGCT
1 CACCACAAACATAGTCTTCTTATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCT
* * * *
1658791 TTTTTCCTACCAATTTTTGTAAAGTCTAAGTTTGTGACTTAAATGAGACAAACATGGATTCTAGT
66 TTTTTCCAACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGT
* * * *
1658856 AATGATCTTTATTCATTTGGTGATTTGGCACTATAAACACATTCTCCTCATTAGGATGAACGATA
131 AATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
* *
1658921 TTGATGATTTTCTTTTGCATGGAAATCTTCTC-TTAGCCCTATTTTCCTTAAAATCAAAGTTCAT
196 TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTA-CCTTATTTTCCTTAAAATCAAAGTTCAT
* * * **
1658985 CCTTTAAATATGGCAAGCATTGATTCTCTTAATAGTCTCCATTCTTTTCAAGATTGAAAAGCAAA
260 CCTTTAAATAAGGCAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAAGCAAA
*
1659050 AACACATTCCTTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTT
325 AACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTT
* * * ** *
1659115 CCACCGTTTTTGACAGAATCAAAGTTTGTCTCTTAAATAAGACAAACACGAGCACTTATACTAAT
390 CCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATACTAAT
*
1659180 CCCCATTCATTTCAGGATTAGG
455 CCCCATTCTTTTCAGGATTAGG
* * * *
1659202 CATCATAAACATAGTCTTCTTATTAGGATACATTATATTGAAGCTTTGGTTTCGCAAGAAAGGCT
1 CACCACAAACATAGTCTTCTTATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGC-
* * * * * * *
1659267 TTTTTTTCACCCCAATTTTTGTGAAGTCTAAGTTCGTGCCTCTAATGAGATACATATGGATTCTA
65 TTTTTTCCA-ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTA
* * * * *
1659332 GTAATGATATTCATTC-TTTTGGTCATTAGACACTATAAACACATTCTCCTCAATAGGATAAATG
129 GTAATGATCTTTATTCATTTT-GTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATG
*
1659396 ATATTGATGATTTTCTTTTACAATGGAAATCTTTTC-TTAGCCTTATTTTCCTTAAAATCAAAGT
193 ATATTGATGATTTTCTTTTGC-ATGGAAATCTTTTCTTTA-CCTTATTTTCCTTAAAATCAAAGT
* * * *
1659460 TCATCTTTTAAATATGGCAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTTAAGATTGGGAAG
256 TCATCCTTTAAATAAGGCAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAAG
*
1659525 CAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTT
321 CAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTT
* *
1659590 CTTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCATA
386 C-TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATA
* * *
1659655 CTAATCCCCGTTCTTTTTAGGATTAGA
450 CTAATCCCCATTCTTTTCAGGATTAGG
* ** *
1659682 TAGCGTC-AACATAGTCTTCTTACTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGC
1 CA-CCACAAACATAGTCTTCTTATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGC
* * * * *
1659746 TTTTTTTTCACACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCTAATGAGATACATATGGATTCT
65 -TTTTTTCCA-ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCT
* * * * * *
1659811 AGTAAAGATCTTTTTTCATTTTTTGAATAGGTACTATGAACA-ATTCTCCTC-TTCAGGATAAAT
128 AGTAATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATT-AGGATAAAT
* * **
1659874 GATATTGATGATTTTATTTTGCATGGATATCTTTTCTTTAAGTTATTTTCCTTAAAATCAAAGTT
192 GATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACCTTATTTTCCTTAAAATCAAAGTT
* ** * * *
1659939 CATCCTTTAAACAAACCAAGCTTCGATTCTCATAATAGCCCCCATTCCTTTT-AAGATTGGGAAG
257 CATCCTTTAAATAAGGCAAGCATCGATTCTCATAATAGTCTCCATT-CTTTTCAAGATTGGGAAG
* * * * *
1660003 CGAACACACATTCACTTT-TTTAGGATACATGAAATTGATGCTTTGGTGTTGTAAGAAAAGCTTT
321 CAAAAACACATTC-CTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTT
* * *
1660067 TCTTTCCACCGTTTTTGATAAAATCAAAGTTTATCTCTTAAAAACGACAAACATGAATACTCATA
385 TCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATA
*
1660132 CTAATCCTCATTCTTTTCAGGATTAGG
450 CTAATCCCCATTCTTTTCAGGATTAGG
*** * *
1660159 CACCACAAATGCAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAGGAAAGGCT
1 CACCACAAACATAGTCTTCTTATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCT
* * * *
1660224 TTTTTCCTACCAATTTTTGTAAAGTCTAAGTTTGTGACTTAAATGAGACAAACATGGATTCTAGT
66 TTTTTCCAACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGT
* * * *
1660289 AATGATCTTTATTCATTTGGTGATTTGGCACTATAAACACATTCTCCTCATTAGGATGAACGATA
131 AATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
* * *
1660354 TTGATGATTTTCTTTTGCATGGAAATCTTCTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC
196 TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACCTTATTTTCCTTAAAATCAAAGTTCATC
* * **
1660419 CTTTAAATATGGCAAGCATCGATTCTCTTAATAGTCTCCATTCTTTTCAAGATTGAAAAGCAAAA
261 CTTTAAATAAGGCAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAAGCAAAA
* *
1660484 ACACATTCCTTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCATTC
326 ACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTC
* * * ** *
1660549 CACCGTTTTTGACAGAATCAAAGTTTGTCTCTTAAATAAGACAAACACGAGCACTTATACTAATC
391 CACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATACTAATC
*
1660614 CCCATTCATTTCAGGATTAGG
456 CCCATTCTTTTCAGGATTAGG
* * * *
1660635 CATCATAAACATAGTCTTCTTATTAGGATACATTATATTGAAGCTTTGGTTTCGCAAGAAAGGCT
1 CACCACAAACATAGTCTTCTTATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGC-
* * * * * * *
1660700 TTTTTTTCACCCCAATTTTTGTGAAGTCTAAGTTCGTGCCTCTAATGAGATACATATGGATTCTA
65 TTTTTTCCA-ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTA
* * * * * * * *
1660765 GTAAAGATTTTTTTTCATTTTTTGAATAGGTACTATAAACA-GTTCTCCTC-TTCAAGATAAATG
129 GTAATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATT-AGGATAAATG
* * * *
1660828 ATATTAATGATTTTATTTTGCTTGGAAATCTTTTCTTTACGTTATTTTCCTTAAAATCAAAGTTC
193 ATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACCTTATTTTCCTTAAAATCAAAGTTC
* ** * * * *
1660893 ATCCTTTAAACAAACCAAGCTTCGATTCTCATAATAGCCCCCATTCCTTTT-AAGATTGGGAATC
258 ATCCTTTAAATAAGGCAAGCATCGATTCTCATAATAGTCTCCATT-CTTTTCAAGATTGGGAAGC
* * *
1660957 AAACACACATTCACTTT-TTTAGGATACATGAAATTGATGCTTTGGTGTCGTAAGAAAAGCTTTT
322 AAAAACACATTC-CTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTT
* * * *
1661021 CTTTCCACCGTTTTCGATAAAATCAAAGTTTATCTCTTAAAAACGACAAACATGAATACTCATAC
386 CTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATAC
*
1661086 TAATCCTCATTCTTTTCAGGATTAGG
451 TAATCCCCATTCTTTTCAGGATTAGG
*** * *
1661112 CACCACAAATGCAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAGGAAAGGCT
1 CACCACAAACATAGTCTTCTTATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCT
* * * * *
1661177 TTTTTCCTACCAATTTTTGTAAAGTCTATGTTTGTGACTTAAATGAGACAAACATGGATTCTAGT
66 TTTTTCCAACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGT
* * * *
1661242 AATGATCTTTATTCATTTGGTGATTTGGCACTATAAACACATTCTCCTCATTAGGATGAACGATA
131 AATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
* * *
1661307 TTGATGATTTTCATTTGCATGGAAATCTTCTC-TTAGCCCTATTTTCCTTAAAATCAAAGTTCAT
196 TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTA-CCTTATTTTCCTTAAAATCAAAGTTCAT
* * **
1661371 CCTTTAAATATGGCAAGCATCGATTCTCTTAATAGTCTCCATTCTTTTCAAGATTGAAAAGCAAA
260 CCTTTAAATAAGGCAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAAGCAAA
*
1661436 AACACATTCCTTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTT
325 AACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTT
* * ** * *
1661501 CCACCGTTTTTGACAGAATCAAAGTTTGTCTCTTAAATAAGACAAACACAAACACTTATACTAAT
390 CCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATACTAAT
*
1661566 CCCCATTCATTTCAGGATTAGG
455 CCCCATTCTTTTCAGGATTAGG
* * * *
1661588 CATCATAAACATAGTCTTCTTATTAGGATACATTATATTGAAGCTTTGGTTTCGCAAGAAAGGCT
1 CACCACAAACATAGTCTTCTTATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCT
* * * * *
1661653 TTTTTTCACACCAATTTTTGTAAACTCTAAGTTCGTGCCTCTAACGAGATAAACATGGATTCTAG
66 TTTTTCCA-ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAG
* * * ** *
1661718 AAAAGATCTTTTTTCATTTTGTGATTAGGTGCTACAAACA-ATTCTCCTC-TTCAGGATAAATGA
130 TAATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATT-AGGATAAATGA
* * * *
1661781 TATTGATGATTTTATTTTGCGTGGAAATCTTTTCTTCACGTTATTTTCCTTAAAATCAAAGTTCA
194 TATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACCTTATTTTCCTTAAAATCAAAGTTCA
* ** * * * ** *
1661846 TCCTTTAAACAAACCAAGCTTCGATTCACATAATAGCCTCCATTCTTTTTTAGATTGGGAAGCGA
259 TCCTTTAAATAAGGCAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAAGCAA
* * * * *
1661911 ACACACATTCCCTTT-ATTAGGATCCATGAAATTGATGCTTTGGTGTCATAGGAAAAGCTTTTCT
324 AAACACATT-CCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCT
* *
1661975 TTCCACCTTTTTTTATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATACTA
388 TTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATACTA
1662040 ATCCCCATTCTTTTCAGGATTAGG
453 ATCCCCATTCTTTTCAGGATTAGG
* * * * *
1662064 CACCATAAACGTAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGCTTCGCAGGAAAGGCT
1 CACCACAAACATAGTCTTCTTATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCT
** * *
1662129 TTTTTCTTACCAATTTTTGTAAAGTCTAAGTTCATGACTCAAATGAGACAAACATGGATTCTAGT
66 TTTTTCCAACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGT
* * * * *
1662194 AATGATCTTCATTC-TTTTGGTCATTAGGCGCTATAAACACATTCTCCTTAATAGGATAAATGAT
131 AATGATCTTTATTCATTTT-GTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGAT
* * * * *
1662258 ATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCTAAGCTCAT
195 ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACCTTATTTTCCTTAAAATCAAAGTTCAT
* * * * * * * * *
1662323 CTTTTAAATAAGGCAAGCCTTGATTCTCGTAA-CGATCTCCATTCTTTTCATGATTTGGATGCCA
260 CCTTTAAATAAGGCAAGCATCGATTCTCATAATAG-TCTCCATTCTTTTCAAGATTGGGAAGCAA
* * * * * *
1662387 AAACACATTCCCTTCATTAGGGTAAATGACATTGATGCTTTGGGGTTGCAAGAAAAGCTTTTCTT
324 AAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTT
* * *
1662452 TCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAGATATGACAAACATGAATACTCATACTAG
389 TCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATACTAA
* *
1662517 TCCCCGTTCTTTTCAAGATTAGG
454 TCCCCATTCTTTTCAGGATTAGG
* * * * * * * ** *
1662540 CACCATAAGCATAGTCTTCTCATTCGAATGCATCATAATGATGCTTTTATTTTGCAAGAAAGGCT
1 CACCACAAACATAGTCTTCTTATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCT
* * * *
1662605 TTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTTAAATGAGACAAACATTGATTCTAGT
66 TTTTTCCAACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGT
* ** * * *
1662670 AAAGATCTTCGTTCATTTTGTGATTAGGTACT-TAAACACATTCTGCTCATTAGAATAAATGATA
131 AATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
* * * * *
1662734 TTGATGATTTTATTTTGCATGGAAATCTTTTCTTTACCCTATTTTTCTTAGAATCAAAGTTCTTC
196 TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACCTTATTTTCCTTAAAATCAAAGTTCATC
* *
1662799 CTTTAAATAAGGCAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGAGAAGCAAAA
261 CTTTAAATAAGGCAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAAGCAAAA
* *
1662864 ACACATTCCCTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTC
326 ACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTC
* * * * *
1662929 TACCGTTTTTGACAGAAT-AAAGGTTTGTCTCTTAAATATGACAAACAAGAATACTGATACTAAT
391 CACCGTTTTTGATAGAATCAAA-GTTTGTCTCTTAAATACGACAAACATGAATACTCATACTAAT
*
1662993 CACCATT-TTCTTCAGGATTAGG
455 CCCCATTCTT-TTCAGGATTAGG
* *
1663015 TC-CCATAAACATAGTCTTCTTATTAGGATACA-CGATATTGATGCTTTGGTTTTGCAAGAAAGG
1 -CACCACAAACATAGTCTTCTTATTAGGATACATC-ATATTGATGCTTTGGTTTCGCAAGAAAGG
** * * * * **
1663078 CTTTTTTCCCCCCAACTTTTATAAAGTTTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCCG
64 CTTTTTTCCAACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTA
* * * * *
1663143 GTAATGATATATATTCATTTGGTGATTTGGCACTATAAACTCATTCTCCTCATTAGGATAAATGA
129 GTAATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGA
1663208 TATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT
194 TATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT
1663244 AGCCCTATTG
Statistics
Matches: 11417, Mismatches: 1546, Indels: 295
0.86 0.12 0.02
Matches are distributed among these distances:
474 218 0.02
475 1497 0.13
476 3483 0.31
477 1619 0.14
478 1704 0.15
479 1741 0.15
480 1135 0.10
481 20 0.00
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.37
Consensus pattern (476 bp):
CACCACAAACATAGTCTTCTTATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCT
TTTTTCCAACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGT
AATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACCTTATTTTCCTTAAAATCAAAGTTCATC
CTTTAAATAAGGCAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTGGGAAGCAAAA
ACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTC
CACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATACTAATC
CCCATTCTTTTCAGGATTAGG
Found at i:1668267 original size:9 final size:9
Alignment explanation
Indices: 1668255--1668315 Score: 56
Period size: 9 Copynumber: 7.1 Consensus size: 9
1668245 CTCTCTCTAT
1668255 TATCTCTCC
1 TATCTCTCC
1668264 TATCTCTCC
1 TATCTCTCC
* *
1668273 T-CCTAT-C
1 TATCTCTCC
*
1668280 -ATCCCTCC
1 TATCTCTCC
*
1668288 TATCTCTAC
1 TATCTCTCC
1668297 TATCTCTCC
1 TATCTCTCC
*
1668306 TGTCTCTCC
1 TATCTCTCC
1668315 T
1 T
1668316 CCTATCATCC
Statistics
Matches: 40, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
7 3 0.08
8 4 0.10
9 33 0.82
ACGTcount: A:0.11, C:0.44, G:0.02, T:0.43
Consensus pattern (9 bp):
TATCTCTCC
Found at i:1668275 original size:12 final size:12
Alignment explanation
Indices: 1668260--1668294 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
1668250 TCTATTATCT
1668260 CTCCTATCTCTC
1 CTCCTATCTCTC
1668272 CTCCTATCATC-C
1 CTCCTATC-TCTC
1668284 CTCCTATCTCT
1 CTCCTATCTCT
1668295 ACTATCTCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
11 2 0.10
12 17 0.81
13 2 0.10
ACGTcount: A:0.11, C:0.49, G:0.00, T:0.40
Consensus pattern (12 bp):
CTCCTATCTCTC
Found at i:1668282 original size:42 final size:42
Alignment explanation
Indices: 1668227--1668345 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
1668217 TTCTTCTCTC
* *
1668227 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTATCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTATCT
* *
1668269 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTATCT
* *
1668311 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
1668346 TTGAGGGCTA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.09, C:0.46, G:0.02, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTATCT
Found at i:1668287 original size:24 final size:24
Alignment explanation
Indices: 1668251--1668336 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
1668241 CCTCCTCTCT
* *
1668251 CTATTATCTCTCCTATCTCTCCTC
1 CTATCATCCCTCCTATCTCTCCTC
*
1668275 CTATCATCCCTCCTA--TCT-CTA
1 CTATCATCCCTCCTATCTCTCCTC
*
1668296 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTATCTCTCCTC
*
1668317 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTATCTCT
1668337 TCTTTCTCTT
Statistics
Matches: 50, Mismatches: 6, Indels: 12
0.74 0.09 0.18
Matches are distributed among these distances:
18 5 0.10
20 4 0.08
21 14 0.28
22 4 0.08
24 23 0.46
ACGTcount: A:0.12, C:0.45, G:0.01, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTATCTCTCCTC
Found at i:1670966 original size:477 final size:475
Alignment explanation
Indices: 1669960--1671923 Score: 2503
Period size: 477 Copynumber: 4.1 Consensus size: 475
1669950 GTTTTCATCA
* * * *
1669960 CCTATTTTCCTTAAAATCAAAGTTCATCTTTTAAATATGGCAAGCATCGATTCTCGTAATAGTCT
1 CCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCATCGATTCTCATAACAGTCT
* * * *
1670025 CCATTCTTTTTAAGATTCGGAAGCGAAAACACAATCCCTTCATTAGGATACATGATATTGATGGT
66 CCATTCTTTTTAAGATTGGGAAGCGAAAACACATTCCCTTCATTAGGATACATGAAATTGATGCT
* *
1670090 TTGGTGTCATAAGAAAAGCTTTTCTTTTCC-CCATTTTTGATAGAATCAAAGTTTATCTCTTAAA
131 TTGGTGTCACAAGAAAAGCTTTTC-TTTCCACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAA
* * *
1670154 TATGACAAACTTGAATACTCATACTAATCCCCATTCTTTTTAGGATTAGGTAGCATAAACATAGT
195 TATGACAAACTTGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGT
* * *
1670219 CTTCTTATTAAGATACATCATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTTTTCACACCAA
260 CTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCACAAGAAAGGC--TTTTTTCCCACCAA
* * * * **
1670284 TTTTTGTAAAGTCTAAGTTCGTGCCTCTAATGAGATAAACATGGATTCTAATAAAGATCTTTTTT
323 TTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATT
* * * * *
1670349 CATTTTGTGAATAGGTACTATAA-ACAGTTCTCCTC-TTCAAGATAAATGATATTGATGATTTTA
388 CATTTGGTGATTAGGCACTATAACACA-TTCTCCTCATT-AGGATAAATGATATTGATGATTTTC
* * *
1670412 TTTTGCGTGCAAATCTTTTCTTTAC
451 TTTTGCATGGAAATCTTTTCTTTGC
** * ** * * *
1670437 ATTATTTTCCTTAAAATCAAAGTTCATCCTTTAAACAAACCAAGCTTCGATTCTCATAATAGCCT
1 CCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCATCGATTCTCATAACAGTCT
* * *
1670502 CCATTCTTTTTAAGATTGGGAAGCGAACACACTTTCCCTTTATTAGGATACATGAAATTGATGCT
66 CCATTCTTTTTAAGATTGGGAAGCGAAAACACATTCCCTTCATTAGGATACATGAAATTGATGCT
* * *
1670567 TTGGTGTCATAAGAAAAGCTTTTCTTTCCACCGTTTTTTATAGAATCAAAGTTTATCTATTAAAT
131 TTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAAT
* * **
1670632 ATGACAAACTTGAATACTCATACTAATCTCCGTTCTTTTCAGGATTAGGCACCATAAATGTAGTC
196 ATGACAAACTTGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTC
* * **
1670697 TTCTCATTAGGATACATCATATTAATGCTTTGGTTTCACAGGAAAGGCTTTTTTCGTACCAATTT
261 TTCTCATTAGGATACATCATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTTCCCACCAATTT
* * * *
1670762 TTATAAAGTCTAAGTTCGTGACTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCTT
326 TTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCAT
* *
1670827 TTGGTCATTAGGCACTATAAGCACATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTTTT
391 TTGGTGATTAGGCACTATAA-CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTT
1670892 GCAT-GACAATCTTTTCTTTGC
455 GCATGGA-AATCTTTTCTTTGC
* * * * * *
1670913 CCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCCTAGCCTCGATTCCCGTGACAATC
1 CCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGG-CAAGCATCGATTCTCATAACAGTC
* * * * * **
1670978 TCCATT-TTTTTCATGATTTGGATGCGAAAACACATTCCTTTCATTAGGGTA-AACAACATTGAT
65 TCCATTCTTTTT-AAGATTGGGAAGCGAAAACACATTCCCTTCATTAGGATACATGAA-ATTGAT
* ** * *
1671041 GCTTTGGGGTTGCAAGAAAAGCTTTTCTTTTCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTA
128 GCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTATCTCTTA
* * ** *
1671106 AATATGACAAACCTAAATACTCATACTAATCCCTGTTCATTTCAGGATTAGGCACCATAAACATA
193 AATATGACAAACTTGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATA
* * * *
1671171 GTCTTCTCATTAGGATACATCATATTGTTGCTTCGATTTCGCAAGAAAGGCTTTTTTCCCACCAA
258 GTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTTCCCACCAA
* *
1671236 TTTTT-TAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGGAATGATCTTCATT
323 TTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATT
* *
1671300 CATTTGGTGATTTA-GCACTATAAACACATTCTTCTCATTAGGATAAAAGATATTGATGATTTTC
388 CATTTGGTGA-TTAGGCACTAT-AACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTC
* *
1671364 TTTTGCATGGAATTCTTTTCTTTGT
451 TTTTGCATGGAAATCTTTTCTTTGC
* * * *
1671389 CCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATATGGCAAGCATTGATTCTCATAACAGTCT
1 CCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCATCGATTCTCATAACAGTCT
* * ** ** * * * *
1671454 CCATTCTTTTCAAGTTTGAAAAGTTAAAACACATTCCCTTCATTAGGCTGCATGACATTGAAGCT
66 CCATTCTTTTTAAGATTGGGAAGCGAAAACACATTCCCTTCATTAGGATACATGAAATTGATGCT
* * * * *
1671519 TTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTAAAAGAATCCAAGTTTGTCTCTTAAAT
131 TTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAAT
* **
1671584 AAGACAAACAGGAATACTCATACTAATCCCCATTCTTTTCAGGATT-GAGCACCATAAACATAGT
196 ATGACAAACTTGAATACTCATACTAATCCCCATTCTTTTCAGGATTAG-GCACCATAAACATAGT
* * ** * *
1671648 TTTCCCATTAGGATACA-CGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTTCCCCCCCCAA
260 CTTCTCATTAGGATACATC-ATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTT-TCCCACCAA
* * * * * * *
1671712 TATATGTAAAGTCTAAGTTCATGCCTTAAATGAGTCAAATATGGATTCTAGTAATAATCTTCATT
323 TTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATT
* * *
1671777 CATTTGGTGATTTGGCACTATAACACATTCTCTTCATTACGATAAATGATATTGATGATTTTCTT
388 CATTTGGTGATTAGGCACTATAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTT
*
1671842 TTGCATGGAAATCTTTTCTTTGA
453 TTGCATGGAAATCTTTTCTTTGC
* * *
1671865 CTTATTTTCCTTAAAATCAAAGTTCATCCCTTCAAA-AA-GCAAGCATCGATTCTCGTAAC
1 CCTATTTTCCTTAAAATCAAAGTTCAT-CCTTTAAATAAGGCAAGCATCGATTCTCATAAC
1671924 TGATGACAAC
Statistics
Matches: 1288, Mismatches: 180, Indels: 40
0.85 0.12 0.03
Matches are distributed among these distances:
474 2 0.00
475 325 0.25
476 368 0.29
477 593 0.46
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.37
Consensus pattern (475 bp):
CCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCATCGATTCTCATAACAGTCT
CCATTCTTTTTAAGATTGGGAAGCGAAAACACATTCCCTTCATTAGGATACATGAAATTGATGCT
TTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAAT
ATGACAAACTTGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTC
TTCTCATTAGGATACATCATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTTCCCACCAATTT
TTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCAT
TTGGTGATTAGGCACTATAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTG
CATGGAAATCTTTTCTTTGC
Found at i:1676923 original size:18 final size:18
Alignment explanation
Indices: 1676902--1676936 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
1676892 CCTCCTCCTG
*
1676902 TTATCCCTCCTCTCTCTA
1 TTATCCCTCCTATCTCTA
*
1676920 TTATCTCTCCTATCTCT
1 TTATCCCTCCTATCTCT
1676937 CCTCCTATCA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.11, C:0.40, G:0.00, T:0.49
Consensus pattern (18 bp):
TTATCCCTCCTATCTCTA
Found at i:1676933 original size:9 final size:9
Alignment explanation
Indices: 1676921--1676981 Score: 56
Period size: 9 Copynumber: 7.1 Consensus size: 9
1676911 CTCTCTCTAT
1676921 TATCTCTCC
1 TATCTCTCC
1676930 TATCTCTCC
1 TATCTCTCC
* *
1676939 T-CCTAT-C
1 TATCTCTCC
*
1676946 -ATCCCTCC
1 TATCTCTCC
*
1676954 TATCTCTAC
1 TATCTCTCC
*
1676963 TATCTCTCA
1 TATCTCTCC
1676972 TATCTCTCC
1 TATCTCTCC
1676981 T
1 T
1676982 CCTATCATCC
Statistics
Matches: 39, Mismatches: 10, Indels: 6
0.71 0.18 0.11
Matches are distributed among these distances:
7 3 0.08
8 4 0.10
9 32 0.82
ACGTcount: A:0.15, C:0.43, G:0.00, T:0.43
Consensus pattern (9 bp):
TATCTCTCC
Found at i:1676941 original size:12 final size:12
Alignment explanation
Indices: 1676926--1677002 Score: 59
Period size: 12 Copynumber: 5.9 Consensus size: 12
1676916 TCTATTATCT
1676926 CTCCTATCTCTC
1 CTCCTATCTCTC
1676938 CTCCTATCATC-C
1 CTCCTATC-TCTC
1676950 CTCCTATCTCTAC
1 CTCCTATCTCT-C
1676963 TATCTCTCATATCTCTC
1 ---CTC-C-TATCTCTC
1676980 CTCCTATCATC-C
1 CTCCTATC-TCTC
*
1676992 CTTCTATCTCT
1 CTCCTATCTCT
1677003 TCTTTCTCTT
Statistics
Matches: 54, Mismatches: 1, Indels: 20
0.72 0.01 0.27
Matches are distributed among these distances:
11 4 0.07
12 29 0.54
13 6 0.11
14 3 0.06
16 3 0.06
17 2 0.04
18 7 0.13
ACGTcount: A:0.14, C:0.44, G:0.00, T:0.42
Consensus pattern (12 bp):
CTCCTATCTCTC
Found at i:1676950 original size:42 final size:42
Alignment explanation
Indices: 1676893--1677011 Score: 166
Period size: 42 Copynumber: 2.8 Consensus size: 42
1676883 TTCTTCTCTC
* * * * *
1676893 CTCCTCCTGTTATCCCTCCTCTCTCTATTATCTCTCCTATCT
1 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCATATCT
1676935 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCATATCT
1 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCATATCT
* * *
1676977 CTCCTCCTATCATCCCTTCTATCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCT
1677012 TTGAGGGCTA
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 69 1.00
ACGTcount: A:0.12, C:0.43, G:0.01, T:0.45
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCATATCT
Found at i:1678944 original size:158 final size:159
Alignment explanation
Indices: 1678782--1679488 Score: 371
Period size: 158 Copynumber: 4.4 Consensus size: 159
1678772 TTCTAATCCT
* * * * *
1678782 ATTCTTTTTAGGATTAGGCACCATAAATATAGTCTTCTCATTAGGATACATGATATTGATGCTTT
1 ATTCTTTTTAGGATTAGGCACCACAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTT
* * *
1678847 CGTTTCACAAGAATGGCTTTTTTCCCATCAATATTT-GTAAAGTCTAAGGTTGTGACTCAAATGA
66 CGTTTCACAAGAATGGCTTTTTTCCCATCAAT-TTTCGTAAAGTCTAAAGTTATGACTCAAATAA
1678911 GACAAACATGGATTTTAGTAATGA-TCTTC
130 GACAAACATGGATTTTAGTAATGAGTCTTC
* * * * * *
1678940 ATTC-TTTTGGCGATTAGGCACTACAAACACATTCTCCTTAATAGGATAAATGATATTGATGATT
1 ATTCTTTTTAG-GATTAGGCACCACAAACACATTCTCCTCATTAGGATACATGATATTGATGCTT
* ** * * * *
1679004 TTGTTTTGCATGGAAAT--CTTTTCTTTGCCC-T--ATTTTCCTTAAAATC-AAAGTTCAT-CCT
65 TCGTTTCACA-AG-AATGGC-TTT-TTT-CCCATCAATTTT-CGTAAAGTCTAAAGTT-ATGAC-
* * * * *
1679062 TTAAATAAGGCAAGTC-TCGATTCTCA-TAAT-AGTCTTC
122 TCAAATAAGACAA-ACATGGATT-TTAGTAATGAGTCTTC
* * * * * * * *
1679099 ATTCTTTTCAAGATTTGGAAGCCA-AAACACATTC-CCTTCATTAGGATGCATGACATTAAAGCT
1 ATTCTTTTTAGGATTAGGCA-CCACAAACACATTCTCC-TCATTAGGATACATGATATTGATGCT
* * * * * * ** * * ** *
1679162 TTGGTGTTGCA-AGGAA-AGCTTTTCTTTCCACCACTTTTAATAGAA-TCAAAATTTATCTCTTA
64 TTCGT-TT-CACAAGAATGGCTTTT-TTCCCATCAATTTTCGTA-AAGTCTAAAGTTATGACTCA
* * * * * * * *
1679224 AATAAGATAAACA-AGA-ATGAATACTCATTCTAATCC
125 AATAAGACAAACATGGATTTTAGTAATGAGTCT--T-C
* * * * * * * *
1679260 TATTCTTTTCAAGATTAGGCACCATAAATATAGTATTCTCATTAGGATACATGATATTGATGCTT
1 -ATTCTTTTTAGGATTAGGCACCACAAACACATTCTCCTCATTAGGATACATGATATTGATGCTT
* * * *
1679325 TCGTTTCGCAAGAATGGCTTTTTTCCCATCAATATTT-GTAAAGTCTAAGGTTGTGACTCAAATG
65 TCGTTTCACAAGAATGGCTTTTTTCCCATCAAT-TTTCGTAAAGTCTAAAGTTATGACTCAAATA
*
1679389 AGACAAACATGGATTCTAGTAATGA-TCTTC
129 AGACAAACATGGATTTTAGTAATGAGTCTTC
* * * * *
1679419 ATTC-TTTTGGTGATTAGGCACTACAAACACATTCTCCTCAATAGGATAAATGATATTGATGATT
1 ATTCTTTTTAG-GATTAGGCACCACAAACACATTCTCCTCATTAGGATACATGATATTGATGCTT
*
1679483 TTGTTT
65 TCGTTT
1679489 TGCATGGAAA
Statistics
Matches: 399, Mismatches: 107, Indels: 86
0.67 0.18 0.15
Matches are distributed among these distances:
156 2 0.01
157 17 0.04
158 132 0.33
159 99 0.25
160 35 0.09
161 44 0.11
162 64 0.16
163 6 0.02
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.37
Consensus pattern (159 bp):
ATTCTTTTTAGGATTAGGCACCACAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTT
CGTTTCACAAGAATGGCTTTTTTCCCATCAATTTTCGTAAAGTCTAAAGTTATGACTCAAATAAG
ACAAACATGGATTTTAGTAATGAGTCTTC
Found at i:1679551 original size:158 final size:154
Alignment explanation
Indices: 1678905--1679665 Score: 429
Period size: 159 Copynumber: 4.8 Consensus size: 154
1678895 GTTGTGACTC
* * * *** *
1678905 AAATGAGACAAACATGGATTTTAGTAAT-GATCTTCATTCTTTTGGCGATTAGGCACTACAAACA
1 AAATAAGACAAACATCGATTCTA-TAATAG-TCTTCATTCTTTTCAAGATTAGGCACCA-AAACA
* *
1678969 CATTCTCCTTAATAGGATAAATGATATTGATGATTTTGTTTTGCATGGAAATCTTTTCTTTGCCC
63 CATTCTCCTCAATAGGATACATGATATTGATGATTTTGTTTTGCATGGAAATCTTTTCTTT-CCC
*
1679034 TATTTTCCTTAAAATCAAAGTTCAT-CCTTT
127 TATTTT-CTTAAAATC-AAGATCATACC-TT
* * * *
1679064 AAATAAGGCAAGTC-TCGATTCTCATAATAGTCTTCATTCTTTTCAAGATTTGGAAGCCAAAACA
1 AAATAAGACAA-ACATCGATTCT-ATAATAGTCTTCATTCTTTTCAAGATTAGGCA-CCAAAACA
* * * * * * * * * *
1679128 CATTC-CCTTCATTAGGATGCATGACATTAAAGCTTTGGTGTTGCAAGGAAAGCTTTTCTTTCCA
63 CATTCTCC-TCAATAGGATACATGATATTGATGATTTTGTTTTGCATGGAAATCTTTTCTTTCC-
* ** * * *
1679192 CCACTTTTAATAGAATCAAAAT-TTATCTCTT
126 CTA-TTTTCTTAAAATCAAGATCATA-C-CTT
* * * ** * *
1679223 AAATAAGATAAACA-AGAATGAATACTCATTCTAATCCTATTCTTTTCAAGATTAGGCACCATAA
1 AAATAAGACAAACATCGATTCTATAAT-AGTCT--T-C-ATTCTTTTCAAGATTAGGCACCA-AA
* * * * * * * * * *
1679287 ATATAGTATTCTCATTAGGATACATGATATTGATGCTTTCGTTTCGCA-AG-AATGGC-TTT-TT
60 ACACATTCTCCTCAATAGGATACATGATATTGATGATTTTGTTTTGCATGGAAAT--CTTTTCTT
* * * ** *
1679348 TCCCATCAATATTT-GTAAAGTCTAAGGTTGTGA-CTC
123 TCCC-T--AT-TTTCTTAAAATC-AAGATCAT-ACCTT
* * *** *
1679384 AAATGAGACAAACATGGATTCTAGTAAT-GATCTTCATTCTTTTGGTGATTAGGCACTACAAACA
1 AAATAAGACAAACATCGATTCTA-TAATAG-TCTTCATTCTTTTCAAGATTAGGCACCA-AAACA
*
1679448 CATTCTCCTCAATAGGATAAATGATATTGATGATTTTGTTTTGCATGGAAATCTTTT-TTTGCCC
63 CATTCTCCTCAATAGGATACATGATATTGATGATTTTGTTTTGCATGGAAATCTTTTCTTT-CCC
*
1679512 TATTTTCCTTAAAATCAGAGATCATACCAT
127 TATTTT-CTTAAAATCA-AGATCATACCTT
* * * *
1679542 AAATCAGACAAGCTTCGATTCTCATAATAGTC-TCATTCTTTTCAAGATTAGGAAGCCAAAACAC
1 AAATAAGACAAACATCGATTCT-ATAATAGTCTTCATTCTTTTCAAGATTAGGCA-CCAAAACAC
* * * * * *
1679606 ATTC-CCTTCAATAGGATACATGATATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTT
64 ATTCTCC-TCAATAGGATACATGATATTGATGATTTTGTTTTGCATGGAAATCTTTTCTTT
1679666 ACACCGTTTT
Statistics
Matches: 449, Mismatches: 110, Indels: 87
0.70 0.17 0.13
Matches are distributed among these distances:
156 5 0.01
157 79 0.18
158 115 0.26
159 122 0.27
160 25 0.06
161 28 0.06
162 69 0.15
163 5 0.01
164 1 0.00
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (154 bp):
AAATAAGACAAACATCGATTCTATAATAGTCTTCATTCTTTTCAAGATTAGGCACCAAAACACAT
TCTCCTCAATAGGATACATGATATTGATGATTTTGTTTTGCATGGAAATCTTTTCTTTCCCTATT
TTCTTAAAATCAAGATCATACCTT
Found at i:1680670 original size:20 final size:19
Alignment explanation
Indices: 1680581--1680670 Score: 78
Period size: 20 Copynumber: 4.7 Consensus size: 19
1680571 CACATCCAGA
* *
1680581 TGTATCGATACATTATGCTT
1 TGTATCGATACA-TATACAT
1680601 TGTATCGATACA-ATACAT
1 TGTATCGATACATATACAT
* * *
1680619 TGTATCAATACATGCT-TAT
1 TGTATCGATACAT-ATACAT
1680638 TGTATCGATACATACT-CATT
1 TGTATCGATACATA-TACA-T
1680658 TGTATCGATACAT
1 TGTATCGATACAT
1680671 GAAACTGGCA
Statistics
Matches: 58, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
18 15 0.26
19 16 0.28
20 27 0.47
ACGTcount: A:0.31, C:0.17, G:0.12, T:0.40
Consensus pattern (19 bp):
TGTATCGATACATATACAT
Found at i:1685399 original size:16 final size:18
Alignment explanation
Indices: 1685363--1685402 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
1685353 GAGGTTTATG
*
1685363 TTGAACAACCTCCTAATT
1 TTGAAAAACCTCCTAATT
1685381 TTGAAAAACCT-CT-ATT
1 TTGAAAAACCTCCTAATT
1685397 TTGAAA
1 TTGAAA
1685403 TCATGTTTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 9 0.43
17 2 0.10
18 10 0.48
ACGTcount: A:0.38, C:0.20, G:0.07, T:0.35
Consensus pattern (18 bp):
TTGAAAAACCTCCTAATT
Found at i:1687332 original size:20 final size:20
Alignment explanation
Indices: 1687292--1687334 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
1687282 GGTCCTGACT
* *
1687292 GGCACACCTAGGTCGCGATC
1 GGCACACCTAGGTCACAATC
*
1687312 GGCACATCTAGGTCACAATC
1 GGCACACCTAGGTCACAATC
1687332 GGC
1 GGC
1687335 TAGCTCCCAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.23, C:0.33, G:0.28, T:0.16
Consensus pattern (20 bp):
GGCACACCTAGGTCACAATC
Found at i:1688630 original size:22 final size:22
Alignment explanation
Indices: 1688605--1688647 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
1688595 AATTTTGGCA
1688605 TTTGACAAAGGGGGAGAAATTT
1 TTTGACAAAGGGGGAGAAATTT
1688627 TTTGACAAAGGGGGAGAAATT
1 TTTGACAAAGGGGGAGAAATT
1688648 ATTGAAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.37, C:0.05, G:0.33, T:0.26
Consensus pattern (22 bp):
TTTGACAAAGGGGGAGAAATTT
Found at i:1688652 original size:21 final size:22
Alignment explanation
Indices: 1688606--1688652 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
1688596 ATTTTGGCAT
*
1688606 TTGACAAAGGGGGAGAAATTTT
1 TTGACAAAGGGGGAGAAATTTA
1688628 TTGACAAAGGGGGAGAAA-TTA
1 TTGACAAAGGGGGAGAAATTTA
1688649 TTGA
1 TTGA
1688653 AAAATTATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 6 0.25
22 18 0.75
ACGTcount: A:0.38, C:0.04, G:0.32, T:0.26
Consensus pattern (22 bp):
TTGACAAAGGGGGAGAAATTTA
Found at i:1689936 original size:12 final size:12
Alignment explanation
Indices: 1689919--1689946 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
1689909 ATTTCTTAAG
1689919 AATTTAGGGTAT
1 AATTTAGGGTAT
1689931 AATTTAGGGTAT
1 AATTTAGGGTAT
1689943 AATT
1 AATT
1689947 CTTGAAGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.36, C:0.00, G:0.21, T:0.43
Consensus pattern (12 bp):
AATTTAGGGTAT
Found at i:1693536 original size:477 final size:477
Alignment explanation
Indices: 1692564--1694446 Score: 2614
Period size: 477 Copynumber: 3.9 Consensus size: 477
1692554 AATGAAAAAC
* **
1692564 GATCTTCATTCATTTTGTGATTAAGCACAATAAACACATTCTCCTCATTAGGATAAATGATATTG
1 GATCTTCATTCATTTTGTGATTAGGCACTGTAAACACATTCTCCTCATTAGGATAAATGATATTG
*
1692629 ATGATTTTCTTTTGCATGGGAATCTTTTCTTTGCCCTATTTTCCTTCAAA-CAAAGTTCATACCT
66 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTCAAATCAAAGTTCATACCT
* * * * *
1692693 TACATAAGACAAGCATCTTTGATTCTCATAATAGTATCCATTCTTTTCAAGACTGGGAACCCAAA
131 TAAATAAGACAAACATC---GATTCTCGTAATAGTCTCCATTCTTTTCAAGACTGGGAAGCCAAA
* *
1692758 AACACATTCCCTTCATTAGGA-AATATGACATTAATGCTTTGGGGTCACAAGAAAAGCTTTTCTT
193 AACACATTCCCTTCATTAGGATAA-ATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTT
* * * *
1692822 TGCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATATGACAAACATGAATACTCATACTAA
257 TTCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATGTATACTCATACTAA
* * * * * * *
1692887 TCCTCATCCTTTGCAGGATTAGGCACCATAAACATAGTCTTTTAATTAGGATAGATAATATTGAT
322 TCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGAT
* * * **
1692952 GCTTTAGTTTCACAAGAAAGGCA-TTTTCCCACCAAATTTCGTAAAGTTTAAGTTTGTGCCTCAA
387 GCTTTAGTTTCACAAGAAAGGCATTTTTCCCACCAATTTTAGTAAAGTCTAAGTTCATGCCTCAA
*
1693016 ATGAGACAAACATAGATTCTAGTAAT
452 ATGAGACAAACATGGATTCTAGTAAT
* *
1693042 GATCTTCATTCATTTTGTGATTGGGCATTGTAAACACATTCTCCTCATTAGGATAAATGATATTG
1 GATCTTCATTCATTTTGTGATTAGGCACTGTAAACACATTCTCCTCATTAGGATAAATGATATTG
* *
1693107 ATGATTTTCTTTTGCAT-GAGAATCTTTTCTTTACCCTATTTTCCTTCAAATTAAAGTTCATACC
66 ATGATTTTCTTTTGCATGGA-AATCTTTTCTTTGCCCTATTTTCCTTCAAATCAAAGTTCATACC
* * *
1693171 TTAAATAAGACAAATATTGATTCTCGTAATAGTCTCCATTTATTTTCAAGACTGGGAAGCCAAAA
130 TTAAATAAGACAAACATCGATTCTCGTAATAGTCTCCA-TTCTTTTCAAGACTGGGAAGCCAAAA
* *
1693236 ACACATTCCCTTTATTAGGATAAATGACATTGATGCTTTGGTGTCACAAGAAAAGCTATTCTTTT
194 ACACATTCCCTTCATTAGGATAAATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTT
* * *
1693301 CACCATTTTTGATAGAATCAAAGTTTGTTTCTTAAAAATAACAAACAT-TAATACTCATACTAAT
259 CACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATGT-ATACTCATACTAAT
* * *
1693365 CCCCATTCTTTTCACGATTAGGCACCATAAACATAATCTTCTCATTAGGATACATGATATCGATG
323 CCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATG
* *
1693430 CTTTGGTTTCACAAGAAAGGCATTTTTCCCACCAATTTTAGTAAAATCTAAGTTCATGCCTCAAA
388 CTTTAGTTTCACAAGAAAGGCATTTTTCCCACCAATTTTAGTAAAGTCTAAGTTCATGCCTCAAA
1693495 TGAGACAAACATGGATTCTAGTAAT
453 TGAGACAAACATGGATTCTAGTAAT
*
1693520 GATCTTCATT-ATTTTGTGATTAGGCACTGTAAACACATTCTCCTCATTAGGATAAATGATATCG
1 GATCTTCATTCATTTTGTGATTAGGCACTGTAAACACATTCTCCTCATTAGGATAAATGATATTG
* * * * *
1693584 ATGATTTTTTTTTTTTTGCTTGGAAATCCTTTATTTGCCCTATTTTCCTTTAAATCAAAGTTCAT
66 ATGA----TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTCAAATCAAAGTTCAT
* * * * * * *
1693649 ACCTTAAATAAGGCAAGCATCGATTCTTGTAACAGCCTCCATTCTTTTTAAGACTGGGAAGCCCA
127 ACCTTAAATAAGACAAACATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGACTGGGAAGCCAA
* * *
1693714 AAACACTTTCCCTTCATTGGGATAAATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT
192 AAACACATTCCCTTCATTAGGATAAATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTT
* * * * * *
1693779 TTTACCATTTCTGATAAAATCAAAATTTGTCTTTTAAATATGACAAACATGTATACCCATACTAA
257 TTCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATGTATACTCATACTAA
* * * *
1693844 TCCCTATTCTTTTCAGGAATAAGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGAT
322 TCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGAT
* * * * *
1693909 GCTTTGGTCTCGCAAGAAAGGCAATTTTT-CCATCAATTTTAGTAAAGTCTAAGTTCATGCCTAA
387 GCTTTAGTTTCACAAGAAAGGC-ATTTTTCCCACCAATTTTAGTAAAGTCTAAGTTCATGCCTCA
1693973 AATGAGACAAACATGGATTCTAGTAAT
451 AATGAGACAAACATGGATTCTAGTAAT
* *
1694000 GATCTTCATTCATTTTGGGATTAGGCACTGTAAACACATTCTCCTCATCAGGATAAATGATATTG
1 GATCTTCATTCATTTTGTGATTAGGCACTGTAAACACATTCTCCTCATTAGGATAAATGATATTG
* * * * * *
1694065 ATGATTTTTTTTTACTTGGAAATCATTTCTTTGCTCTATTTTCCTTTAAATCAAAGTTCATACCT
66 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTCAAATCAAAGTTCATACCT
* * * * *
1694130 TAAATAAGGCAAGCATCGATTCTTGTAATAGTCTCCATTCTTTTCAAGACTAGGAAGCCAAAAGC
131 TAAATAAGACAAACATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGACTGGGAAGCCAAAAAC
* ** * * * *
1694195 ACAATCCCTTCATTAGGATACTTGACATTGATGCTTTGGTGTCGCGAGAAACGCTTTTCTTTCCA
196 ACATTCCCTTCATTAGGATAAATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTTCA
* * * * *
1694260 TCGTTTTTGAAAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGTATACTCATACTAACCCC
261 CCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATGTATACTCATACTAATCCC
* *
1694325 CATTCTTTTCAGGATTAGGCACCATAAACATAGCCTTCTCATTAGGATACATGATATTGATGCTG
326 CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTT
** * * *
1694390 TAGTTTTGCAAGAAAGACATTTTTCCCACCAATTTCT--TAAAGTCAAAGTTCGTGCCT
391 TAGTTTCACAAGAAAGGCATTTTTCCCACCAATTT-TAGTAAAGTCTAAGTTCATGCCT
1694447 TACAAACATG
Statistics
Matches: 1253, Mismatches: 136, Indels: 34
0.88 0.10 0.02
Matches are distributed among these distances:
476 42 0.03
477 579 0.46
478 179 0.14
479 26 0.02
480 282 0.23
481 143 0.11
482 2 0.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (477 bp):
GATCTTCATTCATTTTGTGATTAGGCACTGTAAACACATTCTCCTCATTAGGATAAATGATATTG
ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTCAAATCAAAGTTCATACCT
TAAATAAGACAAACATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGACTGGGAAGCCAAAAAC
ACATTCCCTTCATTAGGATAAATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTTCA
CCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATGTATACTCATACTAATCCC
CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTT
TAGTTTCACAAGAAAGGCATTTTTCCCACCAATTTTAGTAAAGTCTAAGTTCATGCCTCAAATGA
GACAAACATGGATTCTAGTAAT
Found at i:1695790 original size:478 final size:476
Alignment explanation
Indices: 1694465--1697347 Score: 3658
Period size: 478 Copynumber: 6.0 Consensus size: 476
1694455 TGGATTCTAG
* *
1694465 TTAGGATAAATGATATTGATGATCTTCTTTTGCATGGGAATTTTTTCTTTGCCCTATTTTCCTT-
1 TTAGGATAAATGATATTGATGATTTTCTTTTGCAT-GGAATCTTTTCTTTGCCCTATTTTCCTTC
* * * *
1694529 ACAATCAAAGTTCATACCTTAAATAAGACAAACATCGATCCTTGTAATAGTCTCCATTCTTTTCA
65 A-AATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCA
* * * * * *
1694594 AGACTAGGAAGCCAAAAGCACATTCCCTTCAGTAGGATACATGACATTGAAGCTTTGGTGTCGCG
129 AGACTAGGAAGCCAAAAACACATTCCCTTCATTAGGAAACATGACATTGATGCTTTGGTGTCACA
* * *
1694659 AGAAATGCTTTTCTTTTCACTGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATATGAAAAACAT
194 AGAAAAGCTTTTCTTTTCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGAAAAACAT
* * * *
1694724 GAATAATACTCACACTGATGCCCATCCTTTTCAAGATTAGGCACCATAAACATAGTCTTCCCTTT
259 G---AATACTCACACTAATGCCCATCCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATT
*
1694789 AGGATACACGACATTGATGCTTTGGTTTCGCAAGAAAGGT-ATTTTTCCCACCAATTTTTGTAAA
321 AGGATACACGATATTGATGCTTTGGTTTCGCAAGAAA-GTCATTTTTCCCACCAATTTTTGTAAA
* * *
1694853 GTCTATGTTCGTGCCTCAAATGAAACAAACATGGATTCTAGTAATGATCTTCATCCATTTTGTGA
385 GTCTAAGTTCATGCCTCAAATGAAACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGA
1694918 TTAGGCACAGTAAACACATTCTCCTCA
450 TTAGGCACAGTAAACACATTCTCCTCA
* *
1694945 TTAGGATAGATGATATTGATGATTTTCTTTTGCATGGGAATCTTTTCTTTGCCCTATTTTTCTTC
1 TTAGGATAAATGATATTGATGATTTTCTTTTGCAT-GGAATCTTTTCTTTGCCCTATTTTCCTTC
* *
1695010 AAATCAAAGTTCATACCTTAAACAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTCAA
65 AAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAA
* * * * * *
1695075 GACTAGGAAGCCAAAAGCACATTCCCTTCCTTAGG----AGGACATTGAAGCTTTGGTTTCACGA
130 GACTAGGAAGCCAAAAACACATTCCCTTCATTAGGAAACATGACATTGATGCTTTGGTGTCACAA
*
1695136 GAAATGCTTTTCTTTTCACCGTTTTTGATAGAATCAAAGTTTG-CTTCTTAAATATGAAAAACAT
195 GAAAAGCTTTTCTTTTCACCGTTTTTGATAGAATCAAAGTTTGTC-TCTTAAATATGAAAAACAT
* * *
1695200 GAATAATACTCACACTGATGCCCATCCTTTTCAGAATTAGGCACCGTAAACATAGTCTTCTCATT
259 G---AATACTCACACTAATGCCCATCCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATT
* * *
1695265 AGGATACATGACATTGATGCTTTGGTTTCGCAAGAAAGGTAATTTTTCCCACCAATTTTTGTAAA
321 AGGATACACGATATTGATGCTTTGGTTTCGCAAGAAA-GTCATTTTTCCCACCAATTTTTGTAAA
**
1695330 GTCTTTGTTCATGACC-CAAATGAAACAAACATGGATTCTAGTAATGATCTTCATTCATTTTTGT
385 GTCTAAGTTCATG-CCTCAAATGAAACAAACATGGATTCTAGTAATGATCTTCATTCA-TTTTGT
*
1695394 GATTAGGCACAATAAACACATTCTCCTCA
448 GATTAGGCACAGTAAACACATTCTCCTCA
* * * * *
1695423 TTACGATAAATAATATTCACGATTTTCTTTTGCGTGAGAATCTTTTCTTTGCCCTATTTTCCTTC
1 TTAGGATAAATGATATTGATGATTTTCTTTTGCATG-GAATCTTTTCTTTGCCCTATTTTCCTTC
* * * * * * *
1695488 AAATCAAAGTTCATACCTTATATAAGGCAAGTATCAATTCTCATAATAGTTTCCATTCTTTTCAA
65 AAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAA
* * *
1695553 GACTGGGAAGCCAAAAACACATTCCCTTCATTAGGAAACGTGACATTGATGCTTTGGGGTCACAA
130 GACTAGGAAGCCAAAAACACATTCCCTTCATTAGGAAACATGACATTGATGCTTTGGTGTCACAA
* * * *
1695618 GAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCCAAGTTTGTCTCTTAAATACGATAAACATG
195 GAAAAGCTTTTCTTTTCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGAAAAACATG
* * * * * * *
1695683 AATACTCATACAAAT--CCTTACCTTTTTCAGGATTAGGCACCATAAACGTAGTCTTTTAATTAC
260 AATACTCACACTAATGCCCAT-CC-TTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAG
* * * * *
1695746 GATACGCGATATTCG-TGCTTTAGTTTCGCAAGAAAATCATTTTTCCCACCAAATTTCGTAAAGT
323 GATACACGATATT-GATGCTTTGGTTTCGCAAGAAAGTCATTTTTCCCACCAATTTTTGTAAAGT
* * * * * * *
1695810 TTAAGTTCGTGCCTCAAATGAGACAAACATAGAATCTAGTAATGATTTTCATTCAATTTGTGA-T
387 CTAAGTTCATGCCTCAAATGAAACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATT
1695874 A-GCACTA-TAAACACATTCTCCTCA
452 AGGCAC-AGTAAACACATTCTCCTCA
*
1695898 TTAGGATAAATGATATTGATGATTTTCTTTTGCATTGGAATCTTTTCTTTGCCCTGTTTTCCTTC
1 TTAGGATAAATGATATTGATGATTTTCTTTTGCA-TGGAATCTTTTCTTTGCCCTATTTTCCTTC
* * *
1695963 AAATCAAAGTTCATACCTTAAATACGACAAGTATCGATTCTCGTAACAGTCTCCTTTCTTTTCAA
65 AAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAA
* * * * * * *
1696028 GATTGGGAAGCCCAAAAC-CTTTCCCTCCATTGGGATAA-ATGACATTGATGCTTTGGTATCACA
130 GACTAGGAAGCCAAAAACACATTCCCTTCATTAGGA-AACATGACATTGATGCTTTGGTGTCACA
* *
1696091 AGAAAAGCTTTTCTTTTCACCATTTTTGATAGAATCAAAGTTTGTCT-TCTAAATA-CAACAAAC
194 AGAAAAGCTTTTCTTTTCACCGTTTTTGATAGAATCAAAGTTTGTCTCT-TAAATATGAA-AAAC
* ** * * * * *
1696154 AAGTAATGTATACTCGTACTAAT-CCCTGTTCTTTTCAGGATTAGACACCATAAACATAGCCTTG
257 -----ATGAATACTCACACTAATGCCC-ATCCTTTTCAGGATTAGGCACCATAAACATAGTCTTC
* * *
1696218 TCATTAGGATACATC-ATATTGATGCTTTGGTTACGCAAGAAAGGCA-TTTTCCCACCAATTTTA
316 TCATTAGGATACA-CGATATTGATGCTTTGGTTTCGCAAGAAAGTCATTTTTCCCACCAATTTTT
* *
1696281 GTAAAGTCTAAGTTCATGCCTTAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCA---
380 GTAAAGTCTAAGTTCATGCCTCAAATGAAACAAACATGGATTCTAGTAATGATCTTCATTCATTT
*
1696343 T-TGATTAGGCACTGTAAACACATTCTCCTCA
445 TGTGATTAGGCACAGTAAACACATTCTCCTCA
* * *
1696374 TTAGGATAAGTGATATTGATGAATTTTTTTTTTGCATGGAAATCCTTTCTTTGCCCTATTTTCCT
1 TTAGGATAAATGATATTGATG-A-TTTTCTTTTGCATGG-AATCTTTTCTTTGCCCTATTTTCCT
* * * *
1696439 TTAAATCAAAGTTCATAGCTTAAATAAGGCAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTC
63 TCAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTC
* * * * *
1696504 AAGACTAGGAAGCCAAAAGCACATTCGCTTCATTACGATACATGACATTGATGCTTTGGTGTCGC
128 AAGACTAGGAAGCCAAAAACACATTCCCTTCATTAGGAAACATGACATTGATGCTTTGGTGTCAC
* *
1696569 GAGAAATA-CTTTT-TTTTAGCACCGTTTTTAATAGAATCAAAGTTTGTCTCTTAAATATGAAAA
193 AAGAAA-AGCTTTTCTTTT--CACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGAAAA
** * * * *
1696632 ACATGAATACAGACCCTGATGCCCATCCTTTTTAGGATTGGGCACCATAAACATAGTCTTCTCAT
255 ACATGAATACTCACACTAATGCCCATCCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAT
* * *
1696697 TAAGATACACGATATTGATGCTATGGTTTCGCAAGAAAAGT-AATTTTCCCACCAATTTTTGTAA
320 TAGGATACACGATATTGATGCTTTGGTTTCGCAAG-AAAGTCATTTTTCCCACCAATTTTTGTAA
* *
1696761 AGTCTATGTTCATGCTTCAAATGAAACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTG
384 AGTCTAAGTTCATGCCTCAAATGAAACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTG
* * * *
1696826 ATTAGACACTGTAAACACATTCTTCTCG
449 ATTAGGCACAGTAAACACATTCTCCTCA
* * *
1696854 TTAGGATAAATGATATTTATGATTTTCTTTAGCACGAGAATCTTTTCTTTGCCCTATTTTCCTTC
1 TTAGGATAAATGATATTGATGATTTTCTTTTGCATG-GAATCTTTTCTTTGCCCTATTTTCCTTC
*
1696919 AAATCAAAGTTCATACCGTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAA
65 AAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAA
*
1696984 GACT-GCGAAGCCAAAAACACATTCCCTTCATTAGGAAACATGACATTGATGCTTTGGGGTCACA
130 GACTAG-GAAGCCAAAAACACATTCCCTTCATTAGGAAACATGACATTGATGCTTTGGTGTCACA
* * * *
1697048 AGAAAAGCTTTTCTTTTCACCATATTTCATAGAATCAAAGTTTGTCTCTTAAATATGACAAACAT
194 AGAAAAGCTTTTCTTTTCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGAAAAACAT
** * * * * * * *
1697113 GAATACTCGTACTAATTCTCGA-CCTTTTCAGGATTAGGCAGCATAAACGTAGTGTTTTAATTAG
259 GAATACTCACACTAATGC-CCATCCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAG
* * * * *
1697177 GATACACGATATTGATGTTTTAGTTTCGCAAG---G-CATTTTTCCTACCAAATTTCGTAAAGTC
323 GATACACGATATTGATGCTTTGGTTTCGCAAGAAAGTCATTTTTCCCACCAATTTTTGTAAAGTC
* * * * *
1697238 TAAGTTCGTGCCTCAAATGAGACAAATATGGATTCCAGAAATGATCTTCATTCATTTTGTGATTA
388 TAAGTTCATGCCTCAAATGAAACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTA
*
1697303 GGCACAGTAAACACATTCTCCTTA
453 GGCACAGTAAACACATTCTCCTCA
1697327 TTCA-GATAAATGATATTGATG
1 TT-AGGATAAATGATATTGATG
1697348 CTTTGGTGTC
Statistics
Matches: 2102, Mismatches: 244, Indels: 121
0.85 0.10 0.05
Matches are distributed among these distances:
473 121 0.06
474 95 0.05
475 232 0.11
476 310 0.15
477 212 0.10
478 600 0.29
479 205 0.10
480 243 0.12
481 5 0.00
482 78 0.04
483 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (476 bp):
TTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAATCTTTTCTTTGCCCTATTTTCCTTCA
AATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAG
ACTAGGAAGCCAAAAACACATTCCCTTCATTAGGAAACATGACATTGATGCTTTGGTGTCACAAG
AAAAGCTTTTCTTTTCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGAAAAACATGA
ATACTCACACTAATGCCCATCCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGAT
ACACGATATTGATGCTTTGGTTTCGCAAGAAAGTCATTTTTCCCACCAATTTTTGTAAAGTCTAA
GTTCATGCCTCAAATGAAACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGC
ACAGTAAACACATTCTCCTCA
Found at i:1696468 original size:953 final size:954
Alignment explanation
Indices: 1694465--1697347 Score: 3797
Period size: 953 Copynumber: 3.0 Consensus size: 954
1694455 TGGATTCTAG
* * *
1694465 TTAGGATAAATGATATTGATGATCTTCTTTTGCATGGGAATTTTTTCTTTGCCCTATTTTCC-TT
1 TTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTT
* * *
1694529 ACAATCAAAGTTCATACCTTAAATAAGACAAACATCGATCCTTGTAATAGTCTCCATTCTTTTCA
66 A-AATCAAAGTTCATACCTTAAATAAGGCAAGCATCGATTCTTGTAATAGTCTCCATTCTTTTCA
* *
1694594 AGACTAGGAAGCCAAAAGCACATTCCCTTCAGTAGGATACATGACATTGAAGCTTTGGTGTCGCG
130 AGACTAGGAAGCCAAAAGCACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCG
* * * *
1694659 AGAAATGCTTTTCTTTTCACTGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATATGAAAAACAT
195 AGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGAAAAACAT
* * *
1694724 GAATAATACTCACACTGATGCCCATCC-TTTTCAAGATTAGGCACCATAAACATAGTCTTCCCTT
260 G---AATACTCACACTGATGCCCATCCTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAT
* * *
1694788 TAGGATACACGACATTGATGCTTTGGTTTCGCAAGAAAGGTATTTTTCCCACCAATTTTTGTAAA
322 TAAGATACACGATATTGATGCTTTGGTTTCGCAAGAAA-ATATTTTTCCCACCAATTTTTGTAAA
*
1694853 GTCTATGTTCGTGCCTCAAATGAAACAAACATGGATTCTAGTAATGATCTTCATCCATTTTGTGA
386 GTCTATGTTCGTGCCTCAAATGAAACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGA
* *
1694918 TTAGGCAC-AGTAAACACATTCTCCTCATTAGGATAGATGATATTGATGATTTTCTTTTGCATGG
451 TTA-GCACTA-TAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATCG
* *
1694982 GAATCTTTTCTTTGCCCTATTTTTCTTCAAATCAAAGTTCATACCTTAAACAAGACAAGCATCGA
514 GAATCTTTTCTTTGCCCTATTTTCCTTCAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGA
* *
1695047 TTCTTGTAACAGTCTCCATTCTTTTCAAGACTAGGAAG-CCAAAAGCACATTCCCTTCC-TTAGG
579 TTCTCGTAACAGTCTCCATTCTTTTCAAGACTGGGAAGCCCAAAA-CACATTCCC-TCCATTAGG
* * * * * *
1695110 ---AGGACATTGAAGCTTTGGTTTCACGAGAAATGCTTTTCTTTTCACCGTTTTTGATAGAATCA
642 AAAATGACATTGATGCTTTGGTATCACAAGAAAAGCTTTTCTTTTCACCATTTTTGATAGAATCA
* ** * *
1695172 AAGTTTG-CTTCTTAAATATGAA-AAACATGAAT-AATACTCACACTGATGCCC-ATCCTTTTCA
707 AAGTTTGTCTTCTTAAATA-CAACAAACA-GAATGAATACTCGTACTAAT-CCCTGTCCTTTTCA
* * * *
1695233 GAATTAGGCACCGTAAACATAGTCTTCTCATTAGGATACATGACATTGATGCTTTGGTTTCGCAA
769 GGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAA
* * ** *
1695298 GAAAGGTAATTTTTCCCACCAATTTTTGTAAAGTCTTTGTTCATGACC-CAAATGAAACAAACAT
834 GAAAGG-CATTTTTCCCACCAATTTTAGTAAAGTCTAAGTTCATG-CCTCAAATGAGACAAACAT
*
1695362 GGATTCTAGTAATGATCTTCATTCATTTTTGTGATTAGGCACAATAAACACATTCTCCTCA
897 GGATTCTAGTAATGATCTTCATTCA---TTGTGATTAGGCACAGTAAACACATTCTCCTCA
* * * * *
1695423 TTACGATAAATAATATTCACGATTTTCTTTTGCGT-GAGAATCTTTTCTTTGCCCTATTTTCCTT
1 TTAGGATAAATGATATTGATGATTTTCTTTTGCATGGA-AATCTTTTCTTTGCCCTATTTTCCTT
* * * * ** *
1695487 CAAATCAAAGTTCATACCTTATATAAGGCAAGTATCAATTCTCATAATAGTTTCCATTCTTTTCA
65 TAAATCAAAGTTCATACCTTAAATAAGGCAAGCATCGATTCTTGTAATAGTCTCCATTCTTTTCA
* * * * * * *
1695552 AGACTGGGAAGCCAAAAACACATTCCCTTCATTAGGAAACGTGACATTGATGCTTTGGGGTCACA
130 AGACTAGGAAGCCAAAAGCACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCG
* * *
1695617 AGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCCAAGTTTGTCTCTTAAATACGATAAACAT
195 AGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGAAAAACAT
* ** * * * *
1695682 GAATACTCATACAAAT--CCTTACCTTTTTCAGGATTAGGCACCATAAACGTAGTCTTTTAATTA
260 GAATACTCACACTGATGCCCAT-CCTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTA
* * * * *
1695745 CGATACGCGATATTCG-TGCTTTAGTTTCGCAAGAAAATCATTTTTCCCACCAAATTTCGTAAAG
324 AGATACACGATATT-GATGCTTTGGTTTCGCAAGAAAAT-ATTTTTCCCACCAATTTTTGTAAAG
* * * * * * *
1695809 TTTAAGTTCGTGCCTCAAATGAGACAAACATAGAATCTAGTAATGATTTTCATTCAATTTGTGA-
387 TCTATGTTCGTGCCTCAAATGAAACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
*
1695873 TAGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATTGGAA
452 TAGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATCGGAA
* * *
1695938 TCTTTTCTTTGCCCTGTTTTCCTTCAAATCAAAGTTCATACCTTAAATACGACAAGTATCGATTC
517 TCTTTTCTTTGCCCTATTTTCCTTCAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTC
* * * *
1696003 TCGTAACAGTCTCCTTTCTTTTCAAGATTGGGAAGCCCAAAAC-CTTTCCCTCCATTGGGATAAA
582 TCGTAACAGTCTCCATTCTTTTCAAGACTGGGAAGCCCAAAACACATTCCCTCCATTAGGA-AAA
1696067 TGACATTGATGCTTTGGTATCACAAGAAAAGCTTTTCTTTTCACCATTTTTGATAGAATCAAAGT
646 TGACATTGATGCTTTGGTATCACAAGAAAAGCTTTTCTTTTCACCATTTTTGATAGAATCAAAGT
* *
1696132 TTGTCTTC-TAAATACAACAAACAAGTAATGTATACTCGTACTAATCCCTGTTCTTTTCAGGATT
711 TTGTCTTCTTAAATACAACAAAC-AG-AATGAATACTCGTACTAATCCCTGTCCTTTTCAGGATT
* * * *
1696196 AGACACCATAAACATAGCCTTGTCATTAGGATACATCATATTGATGCTTTGGTTACGCAAGAAAG
774 AGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAG
*
1696261 GCA-TTTTCCCACCAATTTTAGTAAAGTCTAAGTTCATGCCTTAAATGAGACAAACATGGATTCT
839 GCATTTTTCCCACCAATTTTAGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCT
*
1696325 AGTAATGATCTTCATTCA-T-TGATTAGGCACTGTAAACACATTCTCCTCA
904 AGTAATGATCTTCATTCATTGTGATTAGGCACAGTAAACACATTCTCCTCA
* * *
1696374 TTAGGATAAGTGATATTGATGAATTTTTTTTTTGCATGGAAATCCTTTCTTTGCCCTATTTTCCT
1 TTAGGATAAATGATATTGATG-A-TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCT
* *
1696439 TTAAATCAAAGTTCATAGCTTAAATAAGGCAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTC
64 TTAAATCAAAGTTCATACCTTAAATAAGGCAAGCATCGATTCTTGTAATAGTCTCCATTCTTTTC
* *
1696504 AAGACTAGGAAGCCAAAAGCACATTCGCTTCATTACGATACATGACATTGATGCTTTGGTGTCGC
129 AAGACTAGGAAGCCAAAAGCACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGC
* * *
1696569 GAGAAATA-CTTTTTTTTAGCACCGTTTTTAATAGAATCAAAGTTTGTCTCTTAAATATGAAAAA
194 GAGAAA-AGCTTTTCTTT-CCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGAAAAA
** * *
1696633 CATGAATACAGACCCTGATGCCCATCCTTTTT-AGGATTGGGCACCATAAACATAGTCTTCTCAT
257 CATGAATACTCACACTGATGCCCATCCTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAT
* *
1696697 TAAGATACACGATATTGATGCTATGGTTTCGCAAGAAAAGTAATTTTCCCACCAATTTTTGTAAA
322 TAAGATACACGATATTGATGCTTTGGTTTCGCAAGAAAA-TATTTTTCCCACCAATTTTTGTAAA
* *
1696762 GTCTATGTTCATGCTTCAAATGAAACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGA
386 GTCTATGTTCGTGCCTCAAATGAAACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGA
* * * * *
1696827 TTAGACACTGTAAACACATTCTTCTCGTTAGGATAAATGATATTTATGATTTTCTTTAGCA-CGA
451 TTAG-CACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATCG-
*
1696891 GAATCTTTTCTTTGCCCTATTTTCCTTCAAATCAAAGTTCATACCGTAAATAAGACAAGCATCGA
514 GAATCTTTTCTTTGCCCTATTTTCCTTCAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGA
* * *
1696956 TTCTCGTAACAGTCTCCATTCTTTTCAAGACTGCGAAGCCAAAAACACATTCCCTTCATTAGGAA
579 TTCTCGTAACAGTCTCCATTCTTTTCAAGACTGGGAAGCCCAAAACACATTCCCTCCATTAGGAA
** * *
1697021 ACATGACATTGATGCTTTGGGGTCACAAGAAAAGCTTTTCTTTTCACCATATTTCATAGAATCAA
644 A-ATGACATTGATGCTTTGGTATCACAAGAAAAGCTTTTCTTTTCACCATTTTTGATAGAATCAA
** * *
1697086 AGTTTGTC-TCTTAAATATGACAAAC---ATGAATACTCGTACTAAT-TCTCGACCTTTTCAGGA
708 AGTTTGTCTTCTTAAATACAACAAACAGAATGAATACTCGTACTAATCCCT-GTCCTTTTCAGGA
* * * * * * *
1697146 TTAGGCAGCATAAACGTAGTGTTTTAATTAGGATACA-CGATATTGATGTTTTAGTTTCGC----
772 TTAGGCACCATAAACATAGTCTTCTCATTAGGATACATC-ATATTGATGCTTTGGTTTCGCAAGA
* * * * *
1697206 AAGGCATTTTTCCTACCAAATTTCGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGAT
836 AAGGCATTTTTCCCACCAATTTTAGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGAT
* * *
1697271 TCCAGAAATGATCTTCATTCATTTTGTGATTAGGCACAGTAAACACATTCTCCTTA
901 TCTAGTAATGATCTTCATTCA--TTGTGATTAGGCACAGTAAACACATTCTCCTCA
1697327 TTCA-GATAAATGATATTGATG
1 TT-AGGATAAATGATATTGATG
1697348 CTTTGGTGTC
Statistics
Matches: 1674, Mismatches: 208, Indels: 91
0.85 0.11 0.05
Matches are distributed among these distances:
948 6 0.00
949 71 0.04
951 50 0.03
952 89 0.05
953 362 0.22
954 208 0.12
955 170 0.10
956 307 0.18
957 106 0.06
958 303 0.18
959 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (954 bp):
TTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTT
AAATCAAAGTTCATACCTTAAATAAGGCAAGCATCGATTCTTGTAATAGTCTCCATTCTTTTCAA
GACTAGGAAGCCAAAAGCACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCGA
GAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGAAAAACATG
AATACTCACACTGATGCCCATCCTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAAG
ATACACGATATTGATGCTTTGGTTTCGCAAGAAAATATTTTTCCCACCAATTTTTGTAAAGTCTA
TGTTCGTGCCTCAAATGAAACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGC
ACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATCGGAATCTT
TTCTTTGCCCTATTTTCCTTCAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGT
AACAGTCTCCATTCTTTTCAAGACTGGGAAGCCCAAAACACATTCCCTCCATTAGGAAAATGACA
TTGATGCTTTGGTATCACAAGAAAAGCTTTTCTTTTCACCATTTTTGATAGAATCAAAGTTTGTC
TTCTTAAATACAACAAACAGAATGAATACTCGTACTAATCCCTGTCCTTTTCAGGATTAGGCACC
ATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCATTTT
TCCCACCAATTTTAGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATG
ATCTTCATTCATTGTGATTAGGCACAGTAAACACATTCTCCTCA
Found at i:1697659 original size:317 final size:313
Alignment explanation
Indices: 1696998--1697664 Score: 862
Period size: 313 Copynumber: 2.1 Consensus size: 313
1696988 GCGAAGCCAA
*
1696998 AAACACATTC-CCTTCATTAGGA-AACATGACATTGATGCTTTGGGGTCACAAGAAAAGCTTTTC
1 AAACACATTCTCC-TCATTAGGATAA-ATGATATTGATGCTTTGGGGTCACAAGAAAAGCTTTTC
* *
1697061 TTTTCACCATATTTCATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCGTACT
64 TTTTCACCATATTTCATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATACT
* * * * * * *
1697126 AATTCTCGACCTTTTCAGGATTAGGCAGCATAAACGTAGTGTTTTAATTAGGATACACGATATTG
129 AATTCCCGACATTTTCAGGATTAGGCACCATAAACATAGTCTTCTAATTAGGACACACGATATTG
* * * *
1697191 ATGTTTTAGTTTCGCAAGGCATTTTTCCTACCAAATTTCGTAAAGTCTAAGTTCGTGCCTCAAAT
194 ATGTTTGAGTTTCGAAAGGCATTTTTCCCACCAAATTTCGTAAAGTCTAAGTTCATGCCTCAAAT
*
1697256 GAGACAAATATGGATTCCAGAAATGATCTTCATTCATTTTGTGATTAGGCACAGT
259 GAGACAAATATGGATTCCAGAAACGATCTTCATTCATTTTGTGATTAGGCACAGT
* * * *
1697311 AAACACATTCTCCTTATTCA-GATAAATGATATTGATGCTTTGGTGTCGCAAGAAAAGTTTTTCT
1 AAACACATTCTCCTCATT-AGGATAAATGATATTGATGCTTTGGGGTCACAAGAAAAGCTTTTCT
* * * * *
1697375 TTTCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGATAAACATGTATACTCATACTA
65 TTTCACCATATTTCATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATACTA
** * * *
1697440 A-TCCCAGTTATTTTCAGGATTAGGCACCGTAAACATCGTCTTCTCATTAGGACACATC-ATATT
130 ATTCCC-GACATTTTCAGGATTAGGCACCATAAACATAGTCTTCTAATTAGGACACA-CGATATT
* * * *
1697503 GATGCTTTGGGTTTGCAAGAAAGGCATTTTTCCCGCCAATTTTTGTAAAGTCTAAGTTCATGCCT
193 GATG-TTTGAGTTT-C--GAAAGGCATTTTTCCCACCAAATTTCGTAAAGTCTAAGTTCATGCCT
* *
1697568 CAAATGAGACAAACT-TGGATTCTAGTAACGATCTTCATTCATTTTGTGATTAGGCACTA-T
254 CAAATGAGACAAA-TATGGATTCCAGAAACGATCTTCATTCATTTTGTGATTAGGCAC-AGT
*
1697628 AAACACATTCTCCTCATTGGGATAAATGATATTGATG
1 AAACACATTCTCCTCATTAGGATAAATGATATTGATG
1697665 ATTTTATTTT
Statistics
Matches: 305, Mismatches: 37, Indels: 20
0.84 0.10 0.06
Matches are distributed among these distances:
312 3 0.01
313 158 0.52
314 13 0.04
315 1 0.00
317 128 0.42
318 2 0.01
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.35
Consensus pattern (313 bp):
AAACACATTCTCCTCATTAGGATAAATGATATTGATGCTTTGGGGTCACAAGAAAAGCTTTTCTT
TTCACCATATTTCATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATACTAA
TTCCCGACATTTTCAGGATTAGGCACCATAAACATAGTCTTCTAATTAGGACACACGATATTGAT
GTTTGAGTTTCGAAAGGCATTTTTCCCACCAAATTTCGTAAAGTCTAAGTTCATGCCTCAAATGA
GACAAATATGGATTCCAGAAACGATCTTCATTCATTTTGTGATTAGGCACAGT
Found at i:1697662 original size:158 final size:157
Alignment explanation
Indices: 1694758--1700357 Score: 1473
Period size: 159 Copynumber: 35.3 Consensus size: 157
1694748 TCCTTTTCAA
* * * * *
1694758 GATTAGGCACCATAAACATAGTCTTCC-CTTTAGGATACACGACATTGATGCTTTGGTTTCGCAA
1 GATTAGGCACCATAAACACATTC-TCCTCATTAGGATACATGATATTGATGCTTTGG-TTCGCAA
* * * * * * *
1694822 GAAAGGTATTTTTCCCACCAATTTTTGTAAAGTCTATGTTCGTGCCTCAAATGAAACAAACATGG
64 GAAAGGCATTTTTTCCACCAATTTTTGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACATGG
* * *
1694887 ATTCTAGTAATGATCTTCATCCATTTT-G
129 ATTCTAGTAACGATCTCCATTCATTTTCG
* * ** *
1694915 TGATTAGGCA-CAGTAAACACATTCTCCTCATTAGGATAGATGATATTGATGATTTTCTTTTGCA
1 -GATTAGGCACCA-TAAACACATTCTCCTCATTAGGATACATGATATTGATG-CTTTGGTTCGCA
* * * * * * * * ** *
1694979 TGGGAA-TCTTTTCTTTGC-CCTATTTTTCTTCAAA-TCAAAGTTCATACCTTAAACAAGACAAG
63 -AGAAAGGCATTT-TTTCCACCAATTTTT-GT-AAAGTCAAAGTTCATGCCTTAAATGAGACAAA
* * *
1695041 CATCGATTCTTGTAAC-AGTCTCCATTC-TTTTCAA
124 CATGGATTCTAGTAACGA-TCTCCATTCATTTTC-G
* * * * * * *
1695075 GACTAGGAAGCCA-AAAGCACATTC-CCTTCCTTAGG----AGGACATTGAAGCTTTGGTTTCAC
1 GATTAGGCA-CCATAAA-CACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGG-TTCGC
* * * * * *
1695134 GAGAAATGCTTTTCTTTTCACC-GTTTTTGATAGAA-TCAAAGTT--TGCTTCTTAAAT-ATGAA
62 AAGAAAGGCATTT-TTTCCACCAATTTTTG-TA-AAGTCAAAGTTCATGC--CTTAAATGA-GAC
* ** * *
1695194 AAACATGAATAATACTCACACTGATGC-CCA-TCCTTTTCAG
121 AAACATGGATTCTAGT-A-AC-GAT-CTCCATTCATTTTC-G
* * * * * *
1695234 AATTAGGCACCGTAAACATAGTCTTCTCATTAGGATACATGACATTGATGCTTTGGTTTCGCAAG
1 GATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGG-TTCGCAAG
* * *** * *
1695299 AAAGGTAATTTTTCCCACCAATTTTTGTAAAGTCTTTGTTCATGACC-CAAATGAAACAAACATG
65 AAAGG-CATTTTTTCCACCAATTTTTGTAAAGTCAAAGTTCATG-CCTTAAATGAGACAAACATG
* * *
1695363 GATTCTAGTAATGATCTTCATTCATTTTTG
128 GATTCTAGTAACGATCTCCATTCATTTTCG
* * * * * * * ** * **
1695393 TGATTAGGCACAATAAACACATTCTCCTCATTACGATAAATAATATTCACGATTTTCTTTTGCGT
1 -GATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATG-CTTTGGTTCGCAA
* * * * * * * * *
1695458 GAGAA-TCTTTTCTTTGC-CCTATTTTCCT-TCAAA-TCAAAGTTCATACCTTATATAAGGCAAG
64 GA-AAGGCATTT-TTTCCACCAATTTT--TGT-AAAGTCAAAGTTCATGCCTTAAATGAGACAAA
* ** * * *
1695519 TATCAATTCTCA-TAA-TAGTTTCCATTC-TTTTCAA
124 CATGGATTCT-AGTAACGA-TCTCCATTCATTTTC-G
* * * * * * * * *
1695553 GACTGGGAAGCCAAAAACACATTC-CCTTCATTAGGAAACGTGACATTGATGCTTTGGGGTCACA
1 GATTAGGCA-CCATAAACACATTCTCC-TCATTAGGATACATGATATTGATGCTTT-GGTTCGCA
* * * * *
1695617 AGAAAAGCTTTTCTTTCCACC-GTTTTTGATAGAA-TCCAAGTT--TGTCTCTTAAAT-ACGATA
63 AGAAAGGCATTT-TTTCCACCAATTTTTG-TA-AAGTCAAAGTTCATG-C-CTTAAATGA-GACA
* * ** *
1695677 AACATGAATACTCA-T-AC-AAATCC-TTACCTTTTTCAG
122 AACATGGATTCT-AGTAACGATCTCCATT--CATTTTC-G
** * ** * * ** *
1695713 GATTAGGCACCATAAACGTAGTCTTTTAATTACGATACGCGATATTCG-TGCTTTAGTTTCGCAA
1 GATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATT-GATGCTTT-GGTTCGCAA
** * * * ** * * *
1695777 GAAAATCATTTTTCCCACCAAATTTCGTAAAGTTTAAGTTCGTGCCTCAAATGAGACAAACATAG
64 GAAAGGCATTTTTTCCACCAATTTTTGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACATGG
* * * * *
1695842 AATCTAGTAATGATTTTCATTCAATTT-G
129 ATTCTAGTAACGATCTCCATTCATTTTCG
* * * ** *
1695870 TGA-TA-GCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAT
1 -GATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATG-CTTTGGTTCGCA-
* * * * * ** *
1695933 TGGAA-TCTTTTCTTTGC-CCTGTTTTCCT-TCAAA-TCAAAGTTCATACCTTAAAT-ACGACAA
63 AGAAAGGCATTT-TTTCCACCAATTTT--TGT-AAAGTCAAAGTTCATGCCTTAAATGA-GACAA
** * * * *
1695993 GTATCGATTCTCGTAAC-AGTCTCCTTTC-TTTTCAA
123 ACATGGATTCTAGTAACGA-TCTCCATTCATTTTC-G
* * * * * * *
1696028 GATTGGGAAGCCCA-AAAC-CTTTC-CCTCCATTGGGATAAATGACATTGATGCTTTGGTATCAC
1 GATTAGGCA--CCATAAACACATTCTCCT-CATTAGGATACATGATATTGATGCTTTGGT-TCGC
* * * * *
1696090 AAGAAAAGCTTTTCTTTTCACC-ATTTTTGATAGAA-TCAAAGTT--TGTCTTCTAAAT-ACAAC
62 AAGAAAGGCATTT-TTTCCACCAATTTTTG-TA-AAGTCAAAGTTCATG-CCT-TAAATGA-GAC
* * * * *
1696150 AAACAAGTAATGTATACTCGT-ACTAATC-CCTGTTC-TTTTCAG
121 AAAC-----ATGGATTCTAGTAAC-GATCTCC-ATTCATTTTC-G
* * ** ** *
1696192 GATTAGACACCATAAACATAGCCTTGTCATTAGGATACATCATATTGATGCTTTGGTTACGCAAG
1 GATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTT-CGCAAG
* * *
1696257 AAAGGCA-TTTTCCCACCAATTTTAGTAAAGTCTAAGTTCATGCCTTAAATGAGACAAACATGGA
65 AAAGGCATTTTTTCCACCAATTTTTGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACATGGA
* *
1696321 TTCTAGTAATGATCTTCATTCA--TT--
130 TTCTAGTAACGATCTCCATTCATTTTCG
** * ** *
1696345 GATTAGGCACTGTAAACACATTCTCCTCATTAGGATA-AGTGATATTGATGAATTTTTTTTTTGC
1 GATTAGGCACCATAAACACATTCTCCTCATTAGGATACA-TGATATTGATG---CTTTGGTTCGC
* * * * * * * *
1696409 ATGGAAA-TCCTTTCTTTGC-CCTATTTTCCTTTAAA-TCAAAGTTCATAG-CTTAAATAAGGCA
62 A-AGAAAGGCATTT-TTTCCACCAATTTT--TGTAAAGTCAAAGTTCAT-GCCTTAAATGAGACA
* * * *
1696470 AGCATCGATTCTTGTAAC-AGTCTCCATTC-TTTTCAA
122 AACATGGATTCTAGTAACGA-TCTCCATTCATTTTC-G
* * * * * * *
1696506 GACTAGGAAGCCA-AAAGCACATTCGCTTCATTACGATACATGACATTGATGCTTTGGTGTCGCG
1 GATTAGGCA-CCATAAA-CACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGT-TCGCA
** * * * * *
1696570 AGAAATACTTTTTTTTAGCACC-GTTTTTAATAGAA-TCAAAGTT--TGTCTCTTAAAT-ATGAA
63 AGAAAGGC-ATTTTTT-CCACCAATTTTT-GTA-AAGTCAAAGTTCATG-C-CTTAAATGA-GAC
* * * * * *
1696630 AAACATGAATAC-AG-ACCCTGATGC-CCATCCTTTTTAG
121 AAACATGGATTCTAGTA-AC-GAT-CTCCATTCATTTTCG
* * * * * * *
1696667 GATTGGGCACCATAAACATAGTCTTCTCATTAAGATACACGATATTGATGCTATGGTTTCGCAAG
1 GATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGG-TTCGCAAG
* * * * * * *
1696732 AAAAGTAATTTTCCCACCAATTTTTGTAAAGTCTATGTTCATG-CTTCAAATGAAACAAACATGG
65 AAAGGCATTTTTTCCACCAATTTTTGTAAAGTCAAAGTTCATGCCTT-AAATGAGACAAACATGG
* *
1696796 ATTCTAGTAATGATCTTCATTCATTTT-G
129 ATTCTAGTAACGATCTCCATTCATTTTCG
* ** * * * * * ** * *
1696824 TGATTAGACACTGTAAACACATTCTTCTCGTTAGGATAAATGATATTTATGATTTTCTTTAGCAC
1 -GATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATG-CTTTGGTTCGCAA
* * * * * * * *
1696889 GAGAA-TCTTTTCTTTGC-CCTATTTTCCT-TCAAA-TCAAAGTTCATACCGTAAATAAGACAAG
64 GA-AAGGCATTT-TTTCCACCAATTTT--TGT-AAAGTCAAAGTTCATGCCTTAAATGAGACAAA
* * *
1696950 CATCGATTCTCGTAAC-AGTCTCCATTC-TTTTCAA
124 CATGGATTCTAGTAACGA-TCTCCATTCATTTTC-G
* * * * * * *
1696984 GACT-GCGAAGCCAAAAACACATTC-CCTTCATTAGGAAACATGACATTGATGCTTTGGGGTCAC
1 GATTAG-GCA-CCATAAACACATTCTCC-TCATTAGGATACATGATATTGATGCTTT-GGTTCGC
* * * **
1697047 AAGAAAAGCTTTTCTTTTCACC-ATATTTCATAGAA-TCAAAGTT--TGTCTCTTAAAT-ATGAC
62 AAGAAAGGCATTT-TTTCCACCAAT-TTTTGTA-AAGTCAAAGTTCATG-C-CTTAAATGA-GAC
* * * * * *
1697107 AAACATGAATACTCGT-ACTAATTCTCGA--CCTTTTCAG
121 AAACATGGATTCTAGTAAC-GA-TCTCCATTCATTTTC-G
* ** * * ** * * * *
1697144 GATTAGGCAGCATAAACGTAGTGTTTTAATTAGGATACACGATATTGATGTTTTAGTTTCGC---
1 GATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTT-GGTTCGCAAG
* * * * * *
1697206 -AAGGCA-TTTTTCCTACCAAATTTCGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGG
65 AAAGGCATTTTTTCC-ACCAATTTTTGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACATGG
* * * *
1697269 ATTCCAGAAATGATCTTCATTCATTTT-G
129 ATTCTAGTAACGATCTCCATTCATTTTCG
* *
1697297 TGATTAGGCA-CAGTAAACACATTCTCCTTATTCA-GATAAATGATATTGATGCTTTGGTGTCGC
1 -GATTAGGCACCA-TAAACACATTCTCCTCATT-AGGATACATGATATTGATGCTTTGGT-TCGC
* ** * * *
1697360 AAGAAAAGTTTTTCTTTTCACC-GTTTTTGATAGAA-TCAAAGTT--TGTCTCTTAAAT-ACGAT
62 AAGAAAGGCATTT-TTTCCACCAATTTTTG-TA-AAGTCAAAGTTCATG-C-CTTAAATGA-GAC
* * *
1697420 AAACATGTATACTCA-T-ACTAATC-CCAGTT-ATTTTCAG
121 AAACATGGATTCT-AGTAAC-GATCTCCA-TTCATTTTC-G
* * * * * *
1697457 GATTAGGCACCGTAAACATC-GTCTTCTCATTAGGACACATCATATTGATGCTTTGGGTTTGCAA
1 GATTAGGCACCATAAACA-CATTCTCCTCATTAGGATACATGATATTGATGCTTT-GGTTCGCAA
* * * * *
1697521 GAAAGGCATTTTTCCCGCCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACTTGG
64 GAAAGGCATTTTTTCCACCAATTTTTGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACATGG
*
1697586 ATTCTAGTAACGATCTTCATTCATTTT-G
129 ATTCTAGTAACGATCTCCATTCATTTTCG
* * * * ** * *
1697614 TGATTAGGCACTATAAACACATTCTCCTCATTGGGATAAATGATATTGATGATTTTATTTTGCAT
1 -GATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATG-CTTTGGTTCGCAA
* * * * * * * * *
1697679 GCAAA-TCCTTTCTTTGCC-CTACTTTCCTT-T-ACGTCAAAGTTCATGCCATAAATAAGCCAAG
64 G-AAAGGCATTT-TTT-CCACCAATTT--TTGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAA
* * * * *
1697740 CATCGATTCTTGCAACAGA-CTCCAATC-TTTTCAA
124 CATGGATTCTAGTAAC-GATCTCCATTCATTTTC-G
* * * * * * *
1697774 GACTAGGAAGCCA-ACATCACATTC-CCTTCATTAGGATACATCACATTGCTGCTTTGGTGTCAC
1 GATTAGGCA-CCATA-AACACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGT-TCGC
* * * * *
1697837 AAGAAAAGCTTTTCTTTCCATCAA--TTTGATAGAGTCAAAGTT--TGTCTCTTAAA-AACGACA
62 AAGAAAGGCATTT-TTTCCACCAATTTTTG-TAAAGTCAAAGTTCATG-C-CTTAAATGA-GACA
** * * *
1697897 AACATTAATACTCA-T-ACTAATCCCCATTC-TTTTCAG
122 AACATGGATTCT-AGTAAC-GATCTCCATTCATTTTC-G
* * * *
1697933 GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGCTCTCGCAAG
1 GATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGT-TCGCAAG
* * * * *
1697998 AAAGGCAATTTTTCCATCAATTTTAGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGA
65 AAAGGCATTTTTTCCACCAATTTTTGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACATGGA
* * *
1698063 TTCTAGTAATGATCTTCATTCATTTTGG
130 TTCTAGTAACGATCTCCATTCATTTTCG
** * * * ** ** **
1698091 GATTAGGCACTGTAAACACATTCTCCTCATCAGGATAAATGATATTGATGATTTTTTTTTACTTG
1 GATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATG-CTTTGGTTCGC-AA
* * * * * * * *
1698156 GAAA-TCATTTCTTTGC-CCTATTTTCCTTTAAA-TCAAAGTTCATACCTTAAATAAGGCAAGCA
64 GAAAGGCATTT-TTTCCACCAATTTT--TGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACA
* * * *
1698218 TCGATTCTTGTAA-TAGTCTCCATTC-TTTTCAA
126 TGGATTCTAGTAACGA-TCTCCATTCATTTTC-G
* * * * * *
1698250 GACTAGGAAGCCA-AAAGCACAATC-CTTTCATTAGGATACTTGACATTGATGCTTTGGTGTCGC
1 GATTAGGCA-CCATAAA-CACATTCTC-CTCATTAGGATACATGATATTGATGCTTTGGT-TCGC
* * * * ** * *
1698313 GAGAAATGCTTTTCTTTCGACCGTTTTTTGTAGAA-TCAAAGTT--TGTCTTTTAAAT-ATGAAA
62 AAGAAAGGCATTT-TTTCCACCAATTTTTGTA-AAGTCAAAGTTCATG-C-CTTAAATGA-GACA
* * * * * * *
1698374 AACAAGAATACTCA--CACTAATGC-CCA-TCCTTTTCAA
122 AACATGGATTCT-AGTAAC-GAT-CTCCATTCATTTTC-G
* * * * * *
1698410 GATTAGGCACCATAAACATAGTCTTCTTATTAGGATACA-CATATTGATGATTTGGTTTCGCAAG
1 GATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGG-TTCGCAAG
* * * * * * *
1698474 AAAGGTATTTTTCCCACCAATTTTTGTAAAGTCTATGTTCGTGCCTCAAATGAAACAAACATGGA
65 AAAGGCATTTTTTCCACCAATTTTTGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACATGGA
* * *
1698539 ATCTAGTAATGATCTTCATTCATTTT-G
130 TTCTAGTAACGATCTCCATTCATTTTCG
* ** * * * * ** * *
1698566 TGATTAGACACTGTAAACACATTCTCCTCGTTAGGATAAATGATATTTATGATTTTCTTTTGCAC
1 -GATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATG-CTTTGGTTCGCAA
* * * * * * *
1698631 GAGAA-TCTTTTCTTTGC-CCTATTTTCCT-TCAAA-TCAAAGTTCATACCTTAAATAAGACAAG
64 GA-AAGGCATTT-TTTCCACCAATTTT--TGT-AAAGTCAAAGTTCATGCCTTAAATGAGACAAA
* * *
1698692 CATCGATTCTCGTAAC-AGTCTCCATTC-TTTTCAA
124 CATGGATTCTAGTAACGA-TCTCCATTCATTTTC-G
* * * * * * * * *
1698726 GACT-GCGAAGCCAAAAACACATTCTCTTCATTAGGAAACATGACATTGATGCTTGAGGGTCACA
1 GATTAG-GCA-CCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTT-TGGTTCGCA
* * * * ** * *
1698790 AGAAAAGCTTTTCTTTTCACC-ATTTTTCATAGAA-TCAAAGTTTGTCCCTCAAAT-ATGACAAA
63 AGAAAGGCATTT-TTTCCACCAATTTTT-GTA-AAGTCAAAGTTCATGCCTTAAATGA-GACAAA
* * * * * *
1698852 TATGAATACTCA-T-ACTAATCCTCGA--CCTTTTCAG
124 CATGGATTCT-AGTAAC-GAT-CTCCATTCATTTTC-G
** ** * * ** * * *
1698886 GATTAGGCAGGATAAACGTAGTGTTTTAATTAGGATACACGATATTGATGCTTTAGTTTCGC---
1 GATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTT-GGTTCGCAAG
* * * * * *
1698948 -AAGGCA-TTTTTCCTACCAAATTTCGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGG
65 AAAGGCATTTTTTCC-ACCAATTTTTGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACATGG
* * * * *
1699011 ATTCCAGAAATGATCTTCATTTATTTT-G
129 ATTCTAGTAACGATCTCCATTCATTTTCG
** * *
1699039 TGATTAGGCACTGTAAACACATTCTCCTTATTCA-GATAAATGATATTGATGCTTTGGTGTCGCA
1 -GATTAGGCACCATAAACACATTCTCCTCATT-AGGATACATGATATTGATGCTTTGGT-TCGCA
* ** * * *
1699103 AGAAAAGTTTTTCTTTTCACC-GTTTTTGATAGAA-TCAAAGTT--TGTCTCTTAAAT-ACGATA
63 AGAAAGGCATTT-TTTCCACCAATTTTTG-TA-AAGTCAAAGTTCATG-C-CTTAAATGA-GACA
* * *
1699163 AACATGTATACTCA-T-ACTAATC-CCAGTT-ATTTTCAG
122 AACATGGATTCT-AGTAAC-GATCTCCA-TTCATTTTC-G
* * * * *
1699199 GATTAGGCACCGTAAACATC-GTCTTCTCATTAGGACACATCATATTGATGCTTTGGGCTT-GCA
1 GATTAGGCACCATAAACA-CATTCTCCTCATTAGGATACATGATATTGATGCTTT-GG-TTCGCA
* * * *
1699262 AGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACTTG
63 AGAAAGGCATTTTTTCCACCAATTTTTGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACATG
* * *
1699327 GATTCTAGTAATGATCTTCATTCATTTTGG
128 GATTCTAGTAACGATCTCCATTCATTTTCG
* * * * ** * *
1699357 GATTAGACACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATG
1 GATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATG-CTTTGGTTCGCAAG
* * * * * * * * *
1699422 CAAA-TCCTTTCTTTGCC-CTACTTTCCTT-T-ACGTCAAAGTTCATGCCATAAATAAGCCAAGC
65 -AAAGGCATTT-TTT-CCACCAATTT--TTGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAAC
* * * *
1699483 ATCGG-TTCTTGCAACAGA-CTCCAATC-TTTTCAA
125 AT-GGATTCTAGTAAC-GATCTCCATTCATTTTC-G
* * * * * * * **
1699516 GACTAGGAAGCCAAAAACACATTCACTTCATTAGGATACATCACATTCTTGCTTTGGTGTCGCAA
1 GATTAGGCA-CCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGT-TCGCAA
* * * * * * *
1699581 TAAAAGCTTTTATTTCCATCGA--TTTGATAGAGTCAAAGTT--TGTCTCTTAAA-AACGACAAA
64 GAAAGGCATTT-TTTCCACCAATTTTTG-TAAAGTCAAAGTTCATG-C-CTTAAATGA-GACAAA
** * * *
1699641 CATTAATACTCA-T-ACTAATCCCCATT-ATTTTCAG
124 CATGGATTCT-AGTAAC-GATCTCCATTCATTTTC-G
* * *
1699675 GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAAG
1 GATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGT-TCGCAAG
* * *
1699740 AAAGGCATTTTTTCCATCAATTTTAGTAAAGTCTAAGTTCATGCCTTAAATGAGACAAACATGGA
65 AAAGGCATTTTTTCCACCAATTTTTGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACATGGA
* * *
1699805 TTCTAGTAATGATCTTCATTCATTTTGG
130 TTCTAGTAACGATCTCCATTCATTTTCG
* * * ** ** **
1699833 GATTAGGCACTATAAACACATTCTCCTCATCAGGATA-ATGATATTGATGATATTTTTTTACTTG
1 GATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCT-TTGGTTCGC-AA
* * * * * * * *
1699897 GAAA-TCATTTCTTTGC-CCTATTTTCCTTTAAA-TCAAAGTTCATACCTTAAATAAGGCAAGCA
64 GAAAGGCATTT-TTTCCACCAATTTT--TGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACA
* * *
1699959 TCGATTCTTA-TAA-TAGTCTCCATTC-TTTTCAA
126 TGGATTC-TAGTAACGA-TCTCCATTCATTTTC-G
* * * * *
1699991 GACTAGGAAGCCA-AAAGCACAATC-CCTTCATTAGGATACTTGACATTGATGCTTTGGTGTCGC
1 GATTAGGCA-CCATAAA-CACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGT-TCGC
* * * * ** * *
1700054 GAGAAATGCTTTTCTTTCGACCGTTTTTTATAGAA-TCAAAGTT--TGTCTCTTAAAT-ATGAAA
62 AAGAAAGGCATTT-TTTCCACCAATTTTTGTA-AAGTCAAAGTTCATG-C-CTTAAATGA-GACA
* * * * * *
1700115 AACAAGAATACTCA--CACTGATGC-CCA-TCCTTTTCAA
122 AACATGGATTCT-AGTAAC-GAT-CTCCATTCATTTTC-G
* * * * * *
1700151 GATTTGGCACCATAAACATAGTCTTCTTATTAGGATACACGATATTGATGCTTTGGTTTCGCAAG
1 GATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGG-TTCGCAAG
* * * * * * *
1700216 AAAGGTATTTTTCCCACCAATTTTTGTAAAGTCTATGTTCGTGCCTCAAATGAAACAAACATGGA
65 AAAGGCATTTTTTCCACCAATTTTTGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACATGGA
* * *
1700281 TTCTAGTAATGATCTTCATCCATTTT-G
130 TTCTAGTAACGATCTCCATTCATTTTCG
* ** *
1700308 TGATTAAGCACTGTAAACACATTCTCCTCATTAGGATAGATGATATTGAT
1 -GATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGAT
1700358 CATTTTCTTT
Statistics
Matches: 3883, Mismatches: 1114, Indels: 890
0.66 0.19 0.15
Matches are distributed among these distances:
152 1 0.00
153 67 0.02
154 166 0.04
155 42 0.01
156 138 0.04
157 279 0.07
158 966 0.25
159 1128 0.29
160 746 0.19
161 125 0.03
162 123 0.03
163 32 0.01
164 67 0.02
165 3 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (157 bp):
GATTAGGCACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTTCGCAAGA
AAGGCATTTTTTCCACCAATTTTTGTAAAGTCAAAGTTCATGCCTTAAATGAGACAAACATGGAT
TCTAGTAACGATCTCCATTCATTTTCG
Found at i:1697959 original size:476 final size:474
Alignment explanation
Indices: 1697311--1699089 Score: 2317
Period size: 476 Copynumber: 3.7 Consensus size: 474
1697301 TAGGCACAGT
* * * *
1697311 AAACACATTCTCCTT-ATTCA-GATAAATGATATTGATGCTTTGGTGTCGCAAGAAAAGTTTTTC
1 AAACACATTC-CCTTCATT-AGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTC
* * * *
1697374 TTTTCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGATAAACATGTATACTCATACT
64 TTTCCACCGATTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATACT
** * * *
1697439 AAT-CCCAGTTATTTTCAGGATTAGGCACCGTAAACATCGTCTTCTCATTAGGACACATCATATT
129 AATCCCCA-TCCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACA-CATATT
*
1697503 GATGCTTTGGGTTTGCAAGAAAGGCATTTTTCCCGCCAATTTTTGTAAAGTCTAAGTTCATGCCT
192 GATGCTTT-GGTTTGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCT
* * *
1697568 CAAATGAGACAAACTTGGATTCTAGTAACGATCTTCATTCATTTTGTGATTAGGCACTATAAACA
256 CAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTGTAAACA
* *
1697633 CATTCTCCTCATTGGGATAAATGATATTGATGATTTTATTTTGCATGCAAATCCTTTCTTTGCCC
321 CATTCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATG-AAATCATTTCTTTGCCC
* ** * * * * *
1697698 TACTTTCCTTTACGTCAAAGTTCATGCCATAAATAAGCCAAGCATCGATTCTTGCAACAGACTCC
385 TATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTTGTAACAGTCTCC
*
1697763 AATCTTTTCAAGACTAGGAAGCCAA
450 ATTCTTTTCAAGACTAGGAAGCCAA
* * * *
1697788 CATCACATTCCCTTCATTAGGATACATCACATTGCTGCTTTGGTGTCACAAGAAAAGCTTTTCTT
1 AAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTT
* * * * *
1697853 TCCATC-AATTTGATAGAGTCAAAGTTTGTCTCTTAAAAACGACAAACATTAATACTCATACTAA
66 TCCACCGATTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATACTAA
* *
1697917 TCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGAT
131 TCCCCATCCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACA-CATATTGAT
* * * *
1697982 GCTTTGCTCTCGCAAGAAAGGCAATTTTT-CCATCAATTTTAGTAAAGTCTAAGTTCATGCCTCA
195 GCTTTGGT-TTGCAAGAAAGGC-ATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCA
*
1698046 AATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGGGATTAGGCACTGTAAACACA
258 AATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTGTAAACACA
* * * *
1698111 TTCTCCTCATCAGGATAAATGATATTGATGATTTTTTTTTACTTGGAAATCATTTCTTTGCCCTA
323 TTCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCAT-GAAATCATTTCTTTGCCCTA
* *
1698176 TTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGGCAAGCATCGATTCTTGTAATAGTCTCCAT
387 TTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTTGTAACAGTCTCCAT
1698241 TCTTTTCAAGACTAGGAAGCCAA
452 TCTTTTCAAGACTAGGAAGCCAA
* * * * * * *
1698264 AAGCACAATCCTTTCATTAGGATACTTGACATTGATGCTTTGGTGTCGCGAGAAATGCTTTTCTT
1 AAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTT
* * * * * * *
1698329 TCGACCGTTTTTTG-TAGAATCAAAGTTTGTCTTTTAAATATGAAAAACAAGAATACTCACACTA
66 TCCACCG-ATTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATACTA
* * *
1698393 ATGCCCATCCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTTATTAGGATACACATATTGAT
130 ATCCCCATCCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACATATTGAT
* * * *
1698458 GATTTGGTTTCGCAAGAAAGGTATTTTTCCCACCAATTTTTGTAAAGTCTATGTTCGTGCCTCAA
195 GCTTTGGTTT-GCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAA
* * *
1698523 ATGAAACAAACATGGAATCTAGTAATGATCTTCATTCATTTTGTGATTAGACACTGTAAACACAT
259 ATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTGTAAACACAT
* * * * *
1698588 TCTCCTCGTTAGGATAAATGATATTTATGATTTTCTTTTGCACGAGAATCTTTTCTTTGCCCTAT
324 TCTCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGA-AATCATTTCTTTGCCCTAT
* *
1698653 TTTCCTTCAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATT
388 TTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTTGTAACAGTCTCCATT
1698718 CTTTTCAAGACT-GCGAAGCCAA
453 CTTTTCAAGACTAG-GAAGCCAA
* * *
1698740 AAACACATTCTCTTCATTAGGAAACATGACATTGATGC-TTGAGGGTCACAAGAAAAGCTTTTCT
1 AAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTG-GTGTCACAAGAAAAGCTTTTCT
* * * * * *
1698804 TTTCACC-ATTTTTCATAGAATCAAAGTTTGTCCCTCAAATATGACAAATATGAATACTCATACT
65 TTCCACCGA-TTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATACT
* ** * * * *
1698868 AATCCTCGA-CCTTTTCAGGATTAGGCAGGATAAACGTAGTGTTTTAATTAGGATACACGATATT
129 AATCC-CCATCCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACAC-ATATT
* * * * * *
1698932 GATGCTTTAGTTT-C--GCAAGGCATTTTTCCTACCAAATTTCGTAAAGTCTAAGTTCGTGCCTC
192 GATGCTTTGGTTTGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTC
* * * *
1698994 AAATGAGACAAATATGGATTCCAGAAATGATCTTCATTTATTTTGTGATTAGGCACTGTAAACAC
257 AAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTGTAAACAC
*
1699059 ATTCTCCTTATTCA-GATAAATGATATTGATG
322 ATTCTCCTCATT-AGGATAAATGATATTGATG
1699090 CTTTGGTGTC
Statistics
Matches: 1138, Mismatches: 146, Indels: 40
0.86 0.11 0.03
Matches are distributed among these distances:
473 126 0.11
474 1 0.00
475 20 0.02
476 810 0.71
477 177 0.16
478 4 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (474 bp):
AAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTT
TCCACCGATTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATACTAA
TCCCCATCCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACATATTGATG
CTTTGGTTTGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAAT
GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTGTAAACACATTC
TCCTCATTAGGATAAATGATATTGATGATTTTATTTTGCATGAAATCATTTCTTTGCCCTATTTT
CCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTT
TTCAAGACTAGGAAGCCAA
Found at i:1699405 original size:317 final size:313
Alignment explanation
Indices: 1698740--1699406 Score: 853
Period size: 313 Copynumber: 2.1 Consensus size: 313
1698730 GCGAAGCCAA
* *
1698740 AAACACATTCTCTTCATTAGGA-AACATGACATTGATGCTTGAGGGTCACAAGAAAAGCTTTTCT
1 AAACACATTCTCCTCATTAGGATAA-ATGATATTGATGCTTGAGGGTCACAAGAAAAGCTTTTCT
* *
1698804 TTTCACCATTTTTCATAGAATCAAAGTTTGTCCCTCAAATATGACAAATATGAATACTCATACTA
65 TTTCACCATTTTTCATAGAATCAAAGTTTGTCCCTCAAATACGACAAACATGAATACTCATACTA
* * * * * *
1698869 ATCCTCGACCTTTTCAGGATTAGGCAGGATAAACGTAGTGTTTTAATTAGGATACACGATATTGA
130 ATCCTCGACATTTTCAGGATTAGGCACGATAAACATAGTCTTCTAATTAGGACACACGATATTGA
* * * *
1698934 TGCTTTAGTTTCGCAAGGCATTTTTCCTACCAAATTTCGTAAAGTCTAAGTTCGTGCCTCAAATG
195 TGCTTTAGTTGCGAAAGGCATTTTTCCCACCAAATTTCGTAAAGTCTAAGTTCATGCCTCAAATG
* * * *
1698999 AGACAAATATGGATTCCAGAAATGATCTTCATTTATTTTGTGATTAGGCACTGT
260 AGACAAATATGGATTCCAGAAATGATCTTCATTCATTTTGGGATTAGACACTAT
* * * *
1699053 AAACACATTCTCCTTATTCA-GATAAATGATATTGATGCTTTG-GTGTCGCAAGAAAAGTTTTTC
1 AAACACATTCTCCTCATT-AGGATAAATGATATTGATGC-TTGAGGGTCACAAGAAAAGCTTTTC
* * * * * *
1699116 TTTTCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGATAAACATGTATACTCATACT
64 TTTTCACCATTTTTCATAGAATCAAAGTTTGTCCCTCAAATACGACAAACATGAATACTCATACT
** * *
1699181 AATCC-CAGTTATTTTCAGGATTAGGCACCG-TAAACATCGTCTTCTCATTAGGACACATC-ATA
129 AATCCTC-GACATTTTCAGGATTAGGCA-CGATAAACATAGTCTTCTAATTAGGACACA-CGATA
* * *
1699243 TTGATGCTTTGGGCTTGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC
191 TTGATGCTTT-AG-TTGC--GAAAGGCATTTTTCCCACCAAATTTCGTAAAGTCTAAGTTCATGC
* *
1699308 CTCAAATGAGACAAACT-TGGATTCTAGTAATGATCTTCATTCATTTTGGGATTAGACACTAT
252 CTCAAATGAGACAAA-TATGGATTCCAGAAATGATCTTCATTCATTTTGGGATTAGACACTAT
1699370 AAACACATTCTCCTCATTAGGATAAATGATATTGATG
1 AAACACATTCTCCTCATTAGGATAAATGATATTGATG
1699407 ATTTTATTTT
Statistics
Matches: 304, Mismatches: 38, Indels: 20
0.84 0.10 0.06
Matches are distributed among these distances:
312 1 0.00
313 161 0.53
314 9 0.03
315 3 0.01
316 1 0.00
317 128 0.42
318 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.35
Consensus pattern (313 bp):
AAACACATTCTCCTCATTAGGATAAATGATATTGATGCTTGAGGGTCACAAGAAAAGCTTTTCTT
TTCACCATTTTTCATAGAATCAAAGTTTGTCCCTCAAATACGACAAACATGAATACTCATACTAA
TCCTCGACATTTTCAGGATTAGGCACGATAAACATAGTCTTCTAATTAGGACACACGATATTGAT
GCTTTAGTTGCGAAAGGCATTTTTCCCACCAAATTTCGTAAAGTCTAAGTTCATGCCTCAAATGA
GACAAATATGGATTCCAGAAATGATCTTCATTCATTTTGGGATTAGACACTAT
Found at i:1700095 original size:476 final size:474
Alignment explanation
Indices: 1699083--1700421 Score: 1883
Period size: 476 Copynumber: 2.8 Consensus size: 474
1699073 GATAAATGAT
*
1699083 ATTGATGCTTTGGTGTCGCAAGAAAAGTTTTTCTTTTCACCGTTTTTGATAGAATCAAAGTTTGT
1 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTC-TTTCACCGTTTTTGATAGAATCAAAGTTTGT
* *
1699148 CTCTTAAATACGATAAACATGT-ATACTCATACTAATCCCAGTTATTTTCAGGATTAGGCACCGT
65 CTCTTAAATACGAAAAACAT-TAATACTCATACTAATCCCA-TTATTTTCAGGATTAGGCACCAT
* * * * *
1699212 AAACATCGTCTTCTCATTAGGACACATCATATTGATGCTTTGGGCTTGCAAGAAAGGCATTTTTC
128 AAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAGGCATTTTTC
*
1699277 CCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACTTGGATTCTAGTAATGAT
193 CCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGAT
*
1699342 CTTCATTCATTTTGGGATTAGACACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATG
258 CTTCATTCATTTTGGGATTAGGCACTATAAACACATTCTCCTCATTAGGAT-AATGATATTGATG
* * * ** * *
1699407 ATTTTATTTTGCATGCAAATCCTTTCTTTGCCCTACTTTCCTTTACGTCAAAGTTCATGCCATAA
322 ATTTTATTTTGCATGGAAATCATTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAA
* *
1699472 ATAAGCCAAGCATCGGTTCTTGCAACAGACTCCAATCTTTTCAAGACTAGGAAGCCAAAAACACA
387 ATAAGCCAAGCATCGATTCTTACAACAGACTCCAATCTTTTCAAGACTAGGAAGCCAAAAACACA
*
1699537 TTCACTTCATTAGGATACATCAC
452 ATCACTTCATTAGGATACATCAC
** * * * * *
1699560 ATTCTTGCTTTGGTGTCGCAATAAAAGCTTTTATTTCCATCG-ATTTGATAGAGTCAAAGTTTGT
1 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT-CACCGTTTTTGATAGAATCAAAGTTTGT
* *
1699624 CTCTTAAAAACGACAAACATTAATACTCATACTAATCCCCATTATTTTCAGGATTAGGCACCATA
65 CTCTTAAATACGAAAAACATTAATACTCATACTAAT-CCCATTATTTTCAGGATTAGGCACCATA
*
1699689 AACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAGGCATTTTTTC
129 AACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAGGCATTTTTCC
* * *
1699754 CATCAATTTTAGTAAAGTCTAAGTTCATGCCTTAAATGAGACAAACATGGATTCTAGTAATGATC
194 CACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATC
*
1699819 TTCATTCATTTTGGGATTAGGCACTATAAACACATTCTCCTCATCAGGATAATGATATTGATGAT
259 TTCATTCATTTTGGGATTAGGCACTATAAACACATTCTCCTCATTAGGATAATGATATTGATGAT
* *
1699884 ATTT-TTTTACTTGGAAATCATTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAA
324 -TTTATTTTGCATGGAAATCATTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAA
* * * * * *
1699948 TAAGGCAAGCATCGATTCTTATAATAGTCTCCATTCTTTTCAAGACTAGGAAGCCAAAAGCACAA
388 TAAGCCAAGCATCGATTCTTACAACAGACTCCAATCTTTTCAAGACTAGGAAGCCAAAAACACAA
* * *
1700013 TCCCTTCATTAGGATACTTGAC
453 TCACTTCATTAGGATACATCAC
* * *
1700035 ATTGATGCTTTGGTGTCGCGAGAAATGCTTTTCTTTCGACCGTTTTTTATAGAATCAAAGTTTGT
1 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC-ACCGTTTTTGATAGAATCAAAGTTTGT
* ** * * ** * *
1700100 CTCTTAAATATGAAAAACAAGAATACTCACACTGATGCCCATCCTTTTCAAGATTTGGCACCATA
65 CTCTTAAATACGAAAAACATTAATACTCATACTAAT-CCCATTATTTTCAGGATTAGGCACCATA
* * * *
1700165 AACATAGTCTTCTTATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGTATTTTTCC
129 AACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAGGCATTTTTCC
* * *
1700230 CACCAATTTTTGTAAAGTCTATGTTCGTGCCTCAAATGAAACAAACATGGATTCTAGTAATGATC
194 CACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATC
* * * * *
1700295 TTCATCCATTTTGTGATTAAGCACTGTAAACACATTCTCCTCATTAGGATAGATGATATTGATCA
259 TTCATTCATTTTGGGATTAGGCACTATAAACACATTCTCCTCATTAGGATA-ATGATATTGATGA
* * * * * * *
1700360 TTTTCTTTTGCATGGGAATCTTTTCTTTACCCTATTTTTCTTCAAATCAAAGTTCATTCCTT
323 TTTTATTTTGCATGGAAATCATTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTT
1700422 TCAAGACTAG
Statistics
Matches: 763, Mismatches: 91, Indels: 16
0.88 0.10 0.02
Matches are distributed among these distances:
474 1 0.00
475 175 0.23
476 489 0.64
477 98 0.13
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.36
Consensus pattern (474 bp):
ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCACCGTTTTTGATAGAATCAAAGTTTGTC
TCTTAAATACGAAAAACATTAATACTCATACTAATCCCATTATTTTCAGGATTAGGCACCATAAA
CATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTCTCGCAAGAAAGGCATTTTTCCCA
CCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTT
CATTCATTTTGGGATTAGGCACTATAAACACATTCTCCTCATTAGGATAATGATATTGATGATTT
TATTTTGCATGGAAATCATTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAA
GCCAAGCATCGATTCTTACAACAGACTCCAATCTTTTCAAGACTAGGAAGCCAAAAACACAATCA
CTTCATTAGGATACATCAC
Found at i:1700800 original size:435 final size:433
Alignment explanation
Indices: 1699979--1700856 Score: 1350
Period size: 435 Copynumber: 2.0 Consensus size: 433
1699969 TAATAGTCTC
* * *
1699979 CATTCTTTTCAAGACTAGGAAGCCAAAAGCACAATCCCTTCATTAGGATACTTGACATTGATGCT
1 CATTCCTTTCAAGACTAGGAAGCCAAAAGCACAATCCCTTCATTAGGA-AC-GGACATTGAAGCT
* *
1700044 TTGGTGTCGCGAGAAATGCTTTTCTTTCGACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAAT
64 TTGGTGTCACGAGAAATGCTTTTCTTTCGACCGTTTTTTATAGAATCAAAGTTTGCCTCTTAAAT
*
1700109 ATGAAAAACAAGAATACTCACACTGATGCCCATCCTTTTCAAGATTTGGCACCATAAACATAGTC
129 ATGAAAAACAAGAATACTCACACTGATGCCCATCCTTTTCAAGATTAGGCACCATAAACATAGTC
* * * * * *
1700174 TTCTTATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGTATTTTTCCCACCAATTT
194 TTATCATTAGAATACACAACATTGATGCTTTGGTTTCGCAAGAAAGGTATTTTTCCAACCAATTT
*
1700239 TTGTAAAGTCTATGTTCGTGCCTCAAATGAAACAAACATGGATTCTAGTAATGATCTTCATCCAT
259 TTGTAAAGTCTATGTTCGTGCCCCAAATGAAACAAACATGGATTCTAGTAATGATCTTCATCCAT
** * * *
1700304 TTTGTGATTAAGCACTGTAAACACATTCTCCTCATTAGGATAGATGATATTGATCATTTTCTTTT
324 TTTGTGATTAAGCACAATAAACACATTCTCCTCATTAGGATAAATAATATTCATCATTTTCTTTT
*
1700369 GCATGGGAATCTTTTCTTTACCCTATTTTTCTTCAAATCAAAGTT
389 GCATGGGAATCTTTTCTTTACCCTATTTTCCTTCAAATCAAAGTT
* *
1700414 CATTCCTTTCAAGACTAGGAAGCCAAAAGCACATTCCCTTCCTTAGG-A-GGACATTGAAGCTTT
1 CATTCCTTTCAAGACTAGGAAGCCAAAAGCACAATCCCTTCATTAGGAACGGACATTGAAGCTTT
1700477 GGTGTCACGAGAAATGCTTTTCTTTTC-ACCGTTTTTTATAGAATCAAAGTTTGCCTCTTAAATA
66 GGTGTCACGAGAAATGCTTTTC-TTTCGACCGTTTTTTATAGAATCAAAGTTTGCCTCTTAAATA
* **
1700541 TGAAAAACATGAATAATACTCACACTGATGCCCATCCTTTT-AAGGATTAGGCACTGTAAACATA
130 TGAAAAAC---AAGAATACTCACACTGATGCCCATCCTTTTCAA-GATTAGGCACCATAAACATA
*
1700605 GTCTTATCATTATAATACACAACATTGATGCTTTGGTTTCGCAAGAAAGGTAATTTTTCCAACCA
191 GTCTTATCATTAGAATACACAACATTGATGCTTTGGTTTCGCAAGAAAGGT-ATTTTTCCAACCA
* *
1700670 ATTTTTGTAAAGTCTTTGTTTGTGCCCCAAATGAAACAAACATGGATTCTAGTAATGATCTTCAT
255 ATTTTTGTAAAGTCTATGTTCGTGCCCCAAATGAAACAAACATGGATTCTAGTAATGATCTTCAT
* * *
1700735 TCATTTTGTGATTAGGCACAATAAACACATTCTCCTCATTAGGATAAATAATATTCATGATTTTC
320 CCATTTTGTGATTAAGCACAATAAACACATTCTCCTCATTAGGATAAATAATATTCATCATTTTC
* * *
1700800 TTTTGCATGGGAATCTTTTCTTTGCCCTATTTTCCTTCAATTCTAAGTT
385 TTTTGCATGGGAATCTTTTCTTTACCCTATTTTCCTTCAAATCAAAGTT
*
1700849 CATACCTT
1 CATTCCTT
1700857 ATATAAGGCA
Statistics
Matches: 403, Mismatches: 34, Indels: 12
0.90 0.08 0.03
Matches are distributed among these distances:
431 78 0.19
432 4 0.01
433 3 0.01
434 91 0.23
435 227 0.56
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.36
Consensus pattern (433 bp):
CATTCCTTTCAAGACTAGGAAGCCAAAAGCACAATCCCTTCATTAGGAACGGACATTGAAGCTTT
GGTGTCACGAGAAATGCTTTTCTTTCGACCGTTTTTTATAGAATCAAAGTTTGCCTCTTAAATAT
GAAAAACAAGAATACTCACACTGATGCCCATCCTTTTCAAGATTAGGCACCATAAACATAGTCTT
ATCATTAGAATACACAACATTGATGCTTTGGTTTCGCAAGAAAGGTATTTTTCCAACCAATTTTT
GTAAAGTCTATGTTCGTGCCCCAAATGAAACAAACATGGATTCTAGTAATGATCTTCATCCATTT
TGTGATTAAGCACAATAAACACATTCTCCTCATTAGGATAAATAATATTCATCATTTTCTTTTGC
ATGGGAATCTTTTCTTTACCCTATTTTCCTTCAAATCAAAGTT
Found at i:1702710 original size:954 final size:949
Alignment explanation
Indices: 1700414--1704601 Score: 5318
Period size: 954 Copynumber: 4.4 Consensus size: 949
1700404 AATCAAAGTT
* * *
1700414 CATTCCTTTCAAGACTAGGAAGCCAAAAGCACATTCCCTTCCTTAGG-AGGACATTGAAGCTTTG
1 CATTCTTTTCAAGACTAGGAAGCCAAAA-CACATTCCC-TCCTTAGGAATGACATTGATGCTTTG
* * * * * *
1700478 GTGTCACGAGAAATGCTTTTCTTTTCACCGTTTTTTATAGAATCAAAGTTTGCCTCTTAAATATG
64 GTGTCGCAAGAAAAGCTTTTCTTTTCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATATG
* * * **
1700543 AAAAACATGAATAATACTCACACTGATGCCCATCCTTTTAAGGATTAGGCACTGTAAACATAGTC
129 AAAAACATGAATAATACTCATACTAAT-CCCATCCTTTTCAGGATTAGGCACCATAAACATAGTC
* ** * * *
1700608 TTATCATTATAATACA-CAACATTGATGCTTTGGTTTCGCAAGAAAGGTAATTTTTCCAACCAAT
193 TTGTCATTAGGATACATC-ATATTGATGCTTTGGTTTCGCAAGAAAGG-CATTTTTCCCACCAAT
* ** * * *
1700672 TTTTGTAAAGTCTTTGTTTGTGCCCCAAATGAAACAAACATGGATTCTAGTAATGATCTTCATTC
256 TTTAGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTC
* *
1700737 ATTTTGTGATTAGGCACAATAAACACATTCTCCTCATTAGGATAAATAATATTCATGATTTTCTT
321 ATTTTGTGATTAGGCACAATAAACACATTCTCCTCATTAGGATAAATGATATTCATGATTTTTTT
* * * *
1700802 TTGCATGGGAATCTTTTCTTTGCCCTATTTTCCTTCAATTCTAAGTTCATACCTTATATAAGGCA
386 TTGCATGGAAATCCTTTCTTTGCCCTATTTTCCTTCAAATCAAAGTTCATACCTTATATAAGGCA
*
1700867 AGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGACTGGGAAGCCAAAAACACATTCCCTTC
451 AGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGACTAGGAAGCCAAAAACACATTCCCTTC
* * *
1700932 ATTAGGAAACATGACATTGATGCTTTGGGGTTACAAGAAAAGCTTTTCTTTCCACCGTTTTTGAT
516 ATTAGGATACATGACATTGATGCTTTGGGGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTAAT
* *
1700997 AGAATCAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCATACTAATCCTCACCCTTTTCA
581 AGAATCAAAGTTTGTCTCTTAAATATGAAAAACATGAATACTCACACTAATCCTCACCCTTTTCA
** * ** *
1701062 GGATTAGGCTGCATAAACATAGTCTTTTAATTATGATACGTGATATTCATCCTTTAGTTTCGCAA
646 GGATTAGGCACCATAAACATAGTC-TTTAATTAAGATACACGATATTCATGCTTTAGTTTCGCAA
* * *
1701127 GAAAGGCATTTTTCCCACCAAATTTCGTAAAGTTTAAGTTCGTGCCTCAAATGAGACAAACATAG
710 GAAAAGCATTTTTCCCACCAAATTTCGTAAAGTCTAAGTTCGTGCCTCAAATGAAACAAACATAG
*
1701192 AATCTAGTAATGATTTTCATTCAATTTGTGATTAGCACTGTAAACACATTCTCCTCATTAGGATA
775 AATCTAGTAATGATCTTCATTCAATTTGTGATTAGCACTGTAAACACATTCTCCTCATTAGGATA
* * *
1701257 AATGATATTGATGATTTTCTTTTGCATGGGAATCTTTTCTTTGCCCTGTTTTCTTTCAAATCAAA
840 AATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTCAAATCAAA
* *
1701322 GTTCATACCTTAAATAAGACAAGCATTGATTCTCATAACAGTCTC
905 GTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTC
* * * *
1701367 CTTTCTTTTCAAGA-TTGTGAAGCCCAAAACACTTTCCCTCCATTGGGATAAATGACATTGATGC
1 CATTCTTTTCAAGACTAG-GAAG-CCAAAACACATTCCCTCC-TTAGG---AATGACATTGATGC
* *
1701431 TTTGGTATCGCAAGAAAAGCTTTTCTTTTCACCATTTTTGATAGAATCAAAGTTTGTCTTTTAAA
60 TTTGGTGTCGCAAGAAAAGCTTTTCTTTTCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAA
* * * *
1701496 TA-CAACAAACATGTAATGTATACTCATACTAATCCCTATTCTTTTCAGGATTAGACACCATAAA
125 TATGAA-AAACATG-AAT-AATACTCATACTAATCCC-ATCCTTTTCAGGATTAGGCACCATAAA
* * *
1701560 CATAGCCTTGTCAATAGGATACATCATATTGATGCTTTGGTTACGCAAGAAAGGCA-TTTTCCCA
186 CATAGTCTTGTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCA
** *
1701624 CCAATTTTAGTAAAGTCTAAGTTAATGCCTTAAATGAGACAAACATGGATTCTAGTAATGATCTT
251 CCAATTTTAGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTT
* * *
1701689 CATTCA----ATGATTAGGCACTAT-AACACATTCTCCTCATTAGGATAAATGATATTGATGATT
316 CATTCATTTTGTGATTAGGCACAATAAACACATTCTCCTCATTAGGATAAATGATATTCATGA--
* *
1701749 TTTTTTTTTGCATGGAAATCCTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATAGCTTA-A
379 TTTTTTTTTGCATGGAAATCCTTTCTTTGCCCTATTTTCCTTCAAATCAAAGTTCATACCTTATA
* ** * * * *
1701813 GTAAGGCAAGCATCAATTCTTGTAAAAATCTCCATTGTTTTCAAGACTAGGAAGCCAAAAGCACA
444 -TAAGGCAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGACTAGGAAGCCAAAAACACA
* * * * * *
1701878 TTCGCTTCATTAGGATATATGACATTGATGCTTTGGTGTCGCGAGAAATGCTTTT-TTTCCCACC
508 TTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCACAAGAAAAGCTTTTCTTT-CCACC
* * ** * *
1701942 GTTTTTAATAGAATCAAAGTTTGCCTCTTAAATATGAAAAACATGAAGACAGACCCTGATGCC-C
572 GTTTTTAATAGAATCAAAGTTTGTCTCTTAAATATGAAAAACATGAATACTCACACTAAT-CCTC
* * * * *
1702006 ATCCTTTTCAGGATTGGGCACCATAAACATAGTCTTCTCATTAAGATACACGATACTGATGCTTT
636 ACCCTTTTCAGGATTAGGCACCATAAACATAGTCTT-TAATTAAGATACACGATATTCATGCTTT
* * * * * *
1702071 GGTTTCGCAAGAAAAGTATTTTTCCCACCAATTTTTGTAAAGTCTATGTTCGTGCTTCAAATGAA
700 AGTTTCGCAAGAAAAGCATTTTTCCCACCAAATTTCGTAAAGTCTAAGTTCGTGCCTCAAATGAA
* * *
1702136 ACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGACACTGTAAACACATTCTCC
765 ACAAACATAGAATCTAGTAATGATCTTCATTCAATTTGTGATTAG-CACTGTAAACACATTCTCC
* * * * *
1702201 TCATTAGGATAAATGATATTGATAATTTTTTTTTTGCTTGGAAATCATTTATTTGCCCTATTTTC
829 TCATTAGGATAAATGATATTGATGA-TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTC
* * * * *
1702266 CTTTAAATCAAAGTTCATACCTTAAATAAGGCAAGCATCAATTCTTGTAATAGTCTC
893 CTTCAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTC
* * * *
1702323 CATTCTTTTCAAGACTAGGAAGCCAAAAGCACATTCCCTTCCTTAGG-AGGACATTAAAGCATTG
1 CATTCTTTTCAAGACTAGGAAGCCAAAA-CACATTCCC-TCCTTAGGAATGACATTGATGCTTTG
* * *
1702387 GTGTCGCAAGAAATGCTTTTCTTTTCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATATG
64 GTGTCGCAAGAAAAGCTTTTCTTTTCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATATG
** * *
1702452 AAAAACATGAATAATACTCACGCTGATGCCCATCCTTTTCAGGATTAGGCACCGTAAACATAGTC
129 AAAAACATGAATAATACTCATACTAAT-CCCATCCTTTTCAGGATTAGGCACCATAAACATAGTC
* * * *
1702517 TTCTCATTAGGATACATGACATTGATGCTTTGGTTTCGCAAGAAAGGTAATTTTTCCCACCAATT
193 TTGTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGG-CATTTTTCCCACCAATT
* ** * * * *
1702582 TTTGTAAAGTCTTTGTTTGTGCCCCAAATGAAACAAACATGGATTCTAATAATGATCTTCATTCA
257 TTAGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCA
*
1702647 TTTTGTGATTAGGCACAATAAACACATTCTCCTCATTAGGATAAATAATATTCATGATTTTTTTT
322 TTTTGTGATTAGGCACAATAAACACATTCTCCTCATTAGGATAAATGATATTCATGA-TTTTTTT
* * *
1702712 TTGCATAGG-AATCTTTTCTTTGCCCTATTTTCCTTCAATTCAAAGTTCATACCTTATATAAAGC
386 TTGCAT-GGAAATCCTTTCTTTGCCCTATTTTCCTTCAAATCAAAGTTCATACCTTATATAAGGC
*
1702776 AAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGACTGGGAAGCCAAAAACACATTCCCTT
450 AAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGACTAGGAAGCCAAAAACACATTCCCTT
* * *
1702841 CCTTAGGA-AGCATGACATTGATGCGTTGGGGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTG
515 CATTAGGATA-CATGACATTGATGCTTTGGGGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTA
* * * * *
1702905 ATAGAATCAAAGTTTGTCTCTTAAATACGACAAACACGAATTCTCATACTAATCCTCACCCTTTT
579 ATAGAATCAAAGTTTGTCTCTTAAATATGAAAAACATGAATACTCACACTAATCCTCACCCTTTT
* * * * *
1702970 CAGGATTAGGCACCAAAAACATAGTCTGTTAATTACGATACGCGATATTCATGCTCTAGTTTGGC
644 CAGGATTAGGCACCATAAACATAGTCT-TTAATTAAGATACACGATATTCATGCTTTAGTTTCGC
* * * *
1703035 AAGAAAGGCA-TTTTCCCACCAAATTTCATAAAGTTTAAGTTCGTGCCTCAAATGAGACAAACAT
708 AAGAAAAGCATTTTTCCCACCAAATTTCGTAAAGTCTAAGTTCGTGCCTCAAATGAAACAAACAT
*
1703099 AGAATCTAGTAATGATTTTCATTCAATTTGTGATTAGCACTGTAAACACATTCTCCTCATTAGGA
773 AGAATCTAGTAATGATCTTCATTCAATTTGTGATTAGCACTGTAAACACATTCTCCTCATTAGGA
* * * *
1703164 TAAATGATATTGATGATTTTTTTTTCCATGGGAATCTTTTCTTTGCCCTGTTTTCCTTCAAATCA
838 TAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTCAAATCA
*
1703229 AAGTTTATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTC
903 AAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTC
* * * * * * *
1703276 CTTTCTTTTCAAGATTGGGAAGCCCAAAACACTTTCCCTCAATTGGGATAAATGACACTGATGCT
1 CATTCTTTTCAAGACTAGGAAG-CCAAAACACATTCCCTC-CTTAGG---AATGACATTGATGCT
* * *
1703341 TTGGTATCGCAAGAAAAGCTTTTCTTTTCACCATTTTTGACAGAATCAAAGTTTGTCTTTTAAAT
61 TTGGTGTCGCAAGAAAAGCTTTTCTTTTCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* * ** *
1703406 A-CAACAAACATGTAATGCATACTCATACTAATCCC-TGTTTTTTCAGGATTAGACACCATAAAC
126 ATGAA-AAACATG-AAT-AATACTCATACTAATCCCAT-CCTTTTCAGGATTAGGCACCATAAAC
* * * *
1703469 ATAGCCTTGTCGTTAGGATACATCATATTGATACTTTGGTTACGCAAGAAAGGCA-TTTTCCCAC
187 ATAGTCTTGTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCAC
* * * * *
1703533 TAATTTTAGTAAAGTCTAAGTTCATGCCTTAAATGAGATAAACATGGATTCTAGTAATGATCCTC
252 CAATTTTAGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTC
** * * * *
1703598 ATTCA---T-TGATTAGGCACTGTAAACACAATCTACTCATTAGTATAAATGATATTGATGATTT
317 ATTCATTTTGTGATTAGGCACAATAAACACATTCTCCTCATTAGGATAAATGATATTCATGA--T
* * *
1703659 TTTTTTTTGCATGGAAATCCTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATAGCTTAAAT
380 TTTTTTTTGCATGGAAATCCTTTCTTTGCCCTATTTTCCTTCAAATCAAAGTTCATACCTTATAT
** * * *
1703724 AAGGCAAGCATCGATTCTTGTAACAGTCTCTATTCTTTTCAAGACTAGGAAGCCAAAAGCACATT
445 AAGGCAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGACTAGGAAGCCAAAAACACATT
* * * * * *
1703789 CGCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCGAGAAATGCTTTT-TTTCCCACCGT
510 CCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCACAAGAAAAGCTTTTCTTT-CCACCGT
* * * *
1703853 TTTTAATAGAATCAAAGTTTGTCTCTTAAATATGAAAAACATGAATACTGACCCTGATGCC-CAT
574 TTTTAATAGAATCAAAGTTTGTCTCTTAAATATGAAAAACATGAATACTCACACTAAT-CCTCAC
* * * *
1703917 CCTTTTCAGGATTGGGCACCATAAACATAGTCTTATCATTAAGATACACGATATTGATGCTTTGG
638 CCTTTTCAGGATTAGGCACCATAAACATAGTCTT-TAATTAAGATACACGATATTCATGCTTTAG
* * * * *
1703982 TTTCGCAAGAAAAGTATTTTTCCCACCAATTTTTGTAAAGTCTATGTTCGTGCTTCAAATGAAAC
702 TTTCGCAAGAAAAGCATTTTTCCCACCAAATTTCGTAAAGTCTAAGTTCGTGCCTCAAATGAAAC
* * * *
1704047 AAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGACACTGTAAACACATTCTCTTC
767 AAACATAGAATCTAGTAATGATCTTCATTCAATTTGTGATTAG-CACTGTAAACACATTCTCCTC
* * *
1704112 GTTAGGATAAATGATATTTATGATTTTCTTTTGC-TCGAGAATCTTTTCTTTGCCCTATTTTCCT
831 ATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGA-AATCTTTTCTTTGCCCTATTTTCCT
*
1704176 TCAAATCAAAGTTCATGCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTC
895 TCAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTC
*
1704231 CATTCTTTTCAAGACTGGGAAGCCAAAAACACATTCCCTCCTTTAGGAATCATGACATTGATGCT
1 CATTCTTTTCAAGACTAGGAAGCC-AAAACACATTCCCTCC-TTAGG-A--ATGACATTGATGCT
* * *
1704296 TTGGGGTCACAAGAAAAGCTTTTCTTTTCACCATTTTTCATAGAATCAAAGTTTGTCTCTTAAAT
61 TTGGTGTCGCAAGAAAAGCTTTTCTTTTCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* * * * *
1704361 ATGACAAACTTG---AATACTCATACTAATCCTCGA-CCTTTTCAGGATTAGGTATCATAAACGT
126 ATGAAAAACATGAATAATACTCATACTAATCC-C-ATCCTTTTCAGGATTAGGCACCATAAACAT
* * * * * *
1704422 ACTGTTTTAATTAGGATACA-CGATATTGATGCTTTAGTTT--C--GTAAGGCATTTTTCCCACC
189 AGTCTTGTCATTAGGATACATC-ATATTGATGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACC
** * * * *
1704482 AAAATTCGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCCAGAAATGATCTTCA
253 AATTTTAGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCA
* *
1704547 TTCATTTTGTGATTAGGCAC-GTAAACACATTCTCCTCATTAAGATAAATGATATT
318 TTCATTTTGTGATTAGGCACAATAAACACATTCTCCTCATTAGGATAAATGATATT
1704602 GATGCTTTGG
Statistics
Matches: 2775, Mismatches: 389, Indels: 144
0.84 0.12 0.04
Matches are distributed among these distances:
947 7 0.00
948 68 0.02
949 1 0.00
950 100 0.04
951 91 0.03
952 252 0.09
953 453 0.16
954 506 0.18
955 378 0.14
956 475 0.17
957 272 0.10
958 81 0.03
959 90 0.03
960 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.35
Consensus pattern (949 bp):
CATTCTTTTCAAGACTAGGAAGCCAAAACACATTCCCTCCTTAGGAATGACATTGATGCTTTGGT
GTCGCAAGAAAAGCTTTTCTTTTCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGAA
AAACATGAATAATACTCATACTAATCCCATCCTTTTCAGGATTAGGCACCATAAACATAGTCTTG
TCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTAG
TAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTT
GTGATTAGGCACAATAAACACATTCTCCTCATTAGGATAAATGATATTCATGATTTTTTTTTGCA
TGGAAATCCTTTCTTTGCCCTATTTTCCTTCAAATCAAAGTTCATACCTTATATAAGGCAAGCAT
CGATTCTCATAATAGTCTCCATTCTTTTCAAGACTAGGAAGCCAAAAACACATTCCCTTCATTAG
GATACATGACATTGATGCTTTGGGGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTAATAGAAT
CAAAGTTTGTCTCTTAAATATGAAAAACATGAATACTCACACTAATCCTCACCCTTTTCAGGATT
AGGCACCATAAACATAGTCTTTAATTAAGATACACGATATTCATGCTTTAGTTTCGCAAGAAAAG
CATTTTTCCCACCAAATTTCGTAAAGTCTAAGTTCGTGCCTCAAATGAAACAAACATAGAATCTA
GTAATGATCTTCATTCAATTTGTGATTAGCACTGTAAACACATTCTCCTCATTAGGATAAATGAT
ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTCAAATCAAAGTTCAT
ACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTC
Found at i:1704238 original size:477 final size:475
Alignment explanation
Indices: 1700414--1704605 Score: 5038
Period size: 478 Copynumber: 8.8 Consensus size: 475
1700404 AATCAAAGTT
* * * *
1700414 CATTCCTTTCAAGACTAGGAAGCCAAAAGCACATTCCCTTCCTTAGG--AGGACATTGAAGCTTT
1 CATTCTTTTCAAGACTAGGAAGCCAAAAGCACATTCCCTTCATTAGGAAATGACATTGATGCTTT
* * * * *
1700477 GGTGTCACGAGAAATGCTTTTCTTTTCACCGTTTTTTATAGAATCAAAGTTTGCCTCTTAAATAT
66 GGTGTCGCAAGAAAAGCTTTTCTTTTCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAT
* * **
1700542 GAAAAACATGAATAATACTCACACTGATGCCCATCCTTTTAAGGATTAGGCACTGTAAACATAGT
131 GAAAAACATG---AATACTCACACTAAT-CCCATCCTTTTCAGGATTAGGCACCATAAACATAGT
** * * * *
1700607 CTTATCATTATAATACACAACATTGATGCTTTGGTTTCGCAAGAAAGGTAATTTTTCCAACCAAT
192 CTTATCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGG-CATTTTTCCCACCAAT
** * * *
1700672 TTTTGTAAAGTCTTTGTTTGTGCCCCAAATGAAACAAACATGGATTCTAGTAATGATCTTCATTC
256 TTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTC
** * * *
1700737 ATTTTGTGATTAGGCACAATAAACACATTCTCCTCATTAGGATAAATAATATTCATGA-TTTTCT
321 ATTTTGTGATTAGGCACTGTAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTT
* * * * *
1700801 TTTGCATGGGAATCTTTTCTTTGCCCTATTTTCCTTCAATTCTAAGTTCATACCTTATATAAGGC
386 TTTGCATGAGAATCTTTTCTTTGCCCTATTTTCCTTCAAATCAAAGTTCATACCTTAAATAAGAC
* *
1700866 AAGCATCGATTCTCATAATAGTCTC
451 AAGCATCGATTCTCGTAACAGTCTC
* *
1700891 CATTCTTTTCAAGACTGGGAAGCCAAAAACACATTCCCTTCATTAGGAAACATGACATTGATGCT
1 CATTCTTTTCAAGACTAGGAAGCCAAAAGCACATTCCCTTCATTAGG-AA-ATGACATTGATGCT
* ** *
1700956 TTGGGGTTACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
64 TTGGTGTCGCAAGAAAAGCTTTTCTTTTCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* * * **
1701021 ATGACAAACATGAATACTCATACTAATCCTCACCCTTTTCAGGATTAGGCTGCATAAACATAGTC
129 ATGAAAAACATGAATACTCACACTAATCC-CATCCTTTTCAGGATTAGGCACCATAAACATAGTC
* * * ** * * * *
1701086 TTTTAATTATGATACGTGATATTCATCCTTTAGTTTCGCAAGAAAGGCATTTTTCCCACCAAATT
193 TTATCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTT
* * * * * *
1701151 TCGTAAAGTTTAAGTTCGTGCCTCAAATGAGACAAACATAGAATCTAGTAATGATTTTCATTCAA
258 TTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCAT
*
1701216 TTTGTGATTA-GCACTGTAAACACATTCTCCTCATTAGGATAAATGATATTGATGA-TTTTCTTT
323 TTTGTGATTAGGCACTGTAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTT
* * *
1701279 TGCATGGGAATCTTTTCTTTGCCCTGTTTTCTTTCAAATCAAAGTTCATACCTTAAATAAGACAA
388 TGCATGAGAATCTTTTCTTTGCCCTATTTTCCTTCAAATCAAAGTTCATACCTTAAATAAGACAA
* *
1701344 GCATTGATTCTCATAACAGTCTC
453 GCATCGATTCTCGTAACAGTCTC
* * * * *
1701367 CTTTCTTTTCAAGA-TTGTGAAGCCCAAAA-CACTTTCCCTCCATTGGGATAAATGACATTGATG
1 CATTCTTTTCAAGACTAG-GAAG-CCAAAAGCACATTCCCTTCATTAGG--AAATGACATTGATG
* * *
1701430 CTTTGGTATCGCAAGAAAAGCTTTTCTTTTCACCATTTTTGATAGAATCAAAGTTTGTCTTTTAA
62 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTTCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAA
* * * *
1701495 ATA-CAACAAACATGTAATGTATACTCATACTAATCCCTATTCTTTTCAGGATTAGACACCATAA
127 ATATGAA-AAACATG--A---ATACTCACACTAATCCC-ATCCTTTTCAGGATTAGGCACCATAA
* * * *
1701559 ACATAGCCTTGTCAATAGGATACATC-ATATTGATGCTTTGGTTACGCAAGAAAGGCA-TTTTCC
185 ACATAGTCTTATCATTAGGATACA-CGATATTGATGCTTTGGTTTCGCAAGAAAGGCATTTTTCC
* ** *
1701622 CACCAATTTTAGTAAAGTCTAAGTTAATGCCTTAAATGAGACAAACATGGATTCTAGTAATGATC
249 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATC
* *
1701687 TTCATTCA----ATGATTAGGCACTAT-AACACATTCTCCTCATTAGGATAAATGATATTGATGA
314 TTCATTCATTTTGTGATTAGGCACTGTAAACACATTCTCCTCATTAGGATAAATGATATTGATGA
* * *
1701747 TTTTTTTTTTTGCATG-GAAATCCTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATAGCTT
379 -TTTTTTTTTTGCATGAG-AATCTTTTCTTTGCCCTATTTTCCTTCAAATCAAAGTTCATACCTT
* * * * * *
1701811 AAGTAAGGCAAGCATCAATTCTTGTAAAAATCTC
442 AAATAAGACAAGCATCGATTCTCGTAACAGTCTC
* *
1701845 CATTGTTTTCAAGACTAGGAAGCCAAAAGCACATTCGCTTCATTAGGATATATGACATTGATGCT
1 CATTCTTTTCAAGACTAGGAAGCCAAAAGCACATTCCCTTCATTAGGA-A-ATGACATTGATGCT
* * * * *
1701910 TTGGTGTCGCGAGAAATGCTTTT-TTTCCCACCGTTTTTAATAGAATCAAAGTTTGCCTCTTAAA
64 TTGGTGTCGCAAGAAAAGCTTTTCTTT-TCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAA
* ** * * *
1701974 TATGAAAAACATGAAGACAGACCCTGATGCCCATCCTTTTCAGGATTGGGCACCATAAACATAGT
128 TATGAAAAACATGAATACTCACACTAAT-CCCATCCTTTTCAGGATTAGGCACCATAAACATAGT
* * * * *
1702039 CTTCTCATTAAGATACACGATACTGATGCTTTGGTTTCGCAAGAAAAGTATTTTTCCCACCAATT
192 CTTATCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATT
* * *
1702104 TTTGTAAAGTCTATGTTCGTGCTTCAAATGAAACAAACATGGATTCTAGTAATGATCTTCATTCA
257 TTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCA
* *
1702169 TTTTGTGATTAGACACTGTAAACACATTCTCCTCATTAGGATAAATGATATTGATAATTTTTTTT
322 TTTTGTGATTAGGCACTGTAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTT
* * * * *
1702234 TTGCTTG-GAAATCATTTATTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGGC
387 TTGCATGAG-AATCTTTTCTTTGCCCTATTTTCCTTCAAATCAAAGTTCATACCTTAAATAAGAC
* * *
1702298 AAGCATCAATTCTTGTAATAGTCTC
451 AAGCATCGATTCTCGTAACAGTCTC
* * * * *
1702323 CATTCTTTTCAAGACTAGGAAGCCAAAAGCACATTCCCTTCCTTAGG--AGGACATTAAAGCATT
1 CATTCTTTTCAAGACTAGGAAGCCAAAAGCACATTCCCTTCATTAGGAAATGACATTGATGCTTT
* *
1702386 GGTGTCGCAAGAAATGCTTTTCTTTTCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAT
66 GGTGTCGCAAGAAAAGCTTTTCTTTTCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAT
* * *
1702451 GAAAAACATGAATAATACTCACGCTGATGCCCATCCTTTTCAGGATTAGGCACCGTAAACATAGT
131 GAAAAACATG---AATACTCACACTAAT-CCCATCCTTTTCAGGATTAGGCACCATAAACATAGT
* * * *
1702516 CTTCTCATTAGGATACATGACATTGATGCTTTGGTTTCGCAAGAAAGGTAATTTTTCCCACCAAT
192 CTTATCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGG-CATTTTTCCCACCAAT
** * * * *
1702581 TTTTGTAAAGTCTTTGTTTGTGCCCCAAATGAAACAAACATGGATTCTAATAATGATCTTCATTC
256 TTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTC
** * *
1702646 ATTTTGTGATTAGGCACAATAAACACATTCTCCTCATTAGGATAAATAATATTCATGATTTTTTT
321 ATTTTGTGATTAGGCACTGTAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTT
* *
1702711 TTTGCAT-AGGAATCTTTTCTTTGCCCTATTTTCCTTCAATTCAAAGTTCATACCTTATATAA-A
386 TTTGCATGA-GAATCTTTTCTTTGCCCTATTTTCCTTCAAATCAAAGTTCATACCTTAAATAAGA
* *
1702774 GCAAGCATCGATTCTCATAATAGTCTC
450 -CAAGCATCGATTCTCGTAACAGTCTC
* * * *
1702801 CATTCTTTTCAAGACTGGGAAGCCAAAAACACATTCCCTTCCTTAGGAAGCATGACATTGATGCG
1 CATTCTTTTCAAGACTAGGAAGCCAAAAGCACATTCCCTTCATTAGGAA--ATGACATTGATGCT
* * *
1702866 TTGGGGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
64 TTGGTGTCGCAAGAAAAGCTTTTCTTTTCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* * * * * * *
1702931 ACGACAAACACGAATTCTCATACTAATCCTCACCCTTTTCAGGATTAGGCACCAAAAACATAGTC
129 ATGAAAAACATGAATACTCACACTAATCC-CATCCTTTTCAGGATTAGGCACCATAAACATAGTC
* * * * * * * *
1702996 TGT-TAATTACGATACGCGATATTCATGCTCTAGTTTGGCAAGAAAGGCA-TTTTCCCACCAAAT
193 T-TATCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATT
** * * * *
1703059 TTCATAAAGTTTAAGTTCGTGCCTCAAATGAGACAAACATAGAATCTAGTAATGATTTTCATTCA
257 TTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCA
*
1703124 ATTTGTGATTA-GCACTGTAAACACATTCTCCTCATTAGGATAAATGATATTGATGA-TTTTTTT
322 TTTTGTGATTAGGCACTGTAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTT
* * * *
1703187 TTCCATGGGAATCTTTTCTTTGCCCTGTTTTCCTTCAAATCAAAGTTTATACCTTAAATAAGACA
387 TTGCATGAGAATCTTTTCTTTGCCCTATTTTCCTTCAAATCAAAGTTCATACCTTAAATAAGACA
1703252 AGCATCGATTCTCGTAACAGTCTC
452 AGCATCGATTCTCGTAACAGTCTC
* * * * * *
1703276 CTTTCTTTTCAAGATTGGGAAGCCCAAAA-CACTTTCCC-TCAATTGGGATAAATGACACTGATG
1 CATTCTTTTCAAGACTAGGAAG-CCAAAAGCACATTCCCTTC-ATTAGG--AAATGACATTGATG
* * * *
1703339 CTTTGGTATCGCAAGAAAAGCTTTTCTTTTCACCATTTTTGACAGAATCAAAGTTTGTCTTTTAA
62 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTTCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAA
* * ** *
1703404 ATA-CAACAAACATGTAATGCATACTCATACTAATCCC-TGTTTTTTCAGGATTAGACACCATAA
127 ATATGAA-AAACATG--A---ATACTCACACTAATCCCAT-CCTTTTCAGGATTAGGCACCATAA
* * * * *
1703467 ACATAGCCTTGTCGTTAGGATACATC-ATATTGATACTTTGGTTACGCAAGAAAGGCA-TTTTCC
185 ACATAGTCTTATCATTAGGATACA-CGATATTGATGCTTTGGTTTCGCAAGAAAGGCATTTTTCC
* * * * *
1703530 CACTAATTTTAGTAAAGTCTAAGTTCATGCCTTAAATGAGATAAACATGGATTCTAGTAATGATC
249 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATC
* * * *
1703595 CTCATTCA---T-TGATTAGGCACTGTAAACACAATCTACTCATTAGTATAAATGATATTGATGA
314 TTCATTCATTTTGTGATTAGGCACTGTAAACACATTCTCCTCATTAGGATAAATGATATTGATGA
* * *
1703656 TTTTTTTTTTTGCATG-GAAATCCTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATAGCTT
379 -TTTTTTTTTTGCATGAG-AATCTTTTCTTTGCCCTATTTTCCTTCAAATCAAAGTTCATACCTT
* *
1703720 AAATAAGGCAAGCATCGATTCTTGTAACAGTCTC
442 AAATAAGACAAGCATCGATTCTCGTAACAGTCTC
* * *
1703754 TATTCTTTTCAAGACTAGGAAGCCAAAAGCACATTCGCTTCATTAGGATACAAGACATTGATGCT
1 CATTCTTTTCAAGACTAGGAAGCCAAAAGCACATTCCCTTCATTAGGA-A-ATGACATTGATGCT
* * * *
1703819 TTGGTGTCGCGAGAAATGCTTTT-TTTCCCACCGTTTTTAATAGAATCAAAGTTTGTCTCTTAAA
64 TTGGTGTCGCAAGAAAAGCTTTTCTTT-TCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAA
* * * *
1703883 TATGAAAAACATGAATACTGACCCTGATGCCCATCCTTTTCAGGATTGGGCACCATAAACATAGT
128 TATGAAAAACATGAATACTCACACTAAT-CCCATCCTTTTCAGGATTAGGCACCATAAACATAGT
* * *
1703948 CTTATCATTAAGATACACGATATTGATGCTTTGGTTTCGCAAGAAAAGTATTTTTCCCACCAATT
192 CTTATCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATT
* * *
1704013 TTTGTAAAGTCTATGTTCGTGCTTCAAATGAAACAAACATGGATTCTAGTAATGATCTTCATTCA
257 TTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCA
* * * * *
1704078 TTTTGTGATTAGACACTGTAAACACATTCTCTTCGTTAGGATAAATGATATTTATGA-TTTTCTT
322 TTTTGTGATTAGGCACTGTAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTT
*
1704142 TTGC-TCGAGAATCTTTTCTTTGCCCTATTTTCCTTCAAATCAAAGTTCATGCCTTAAATAAGAC
387 TTGCAT-GAGAATCTTTTCTTTGCCCTATTTTCCTTCAAATCAAAGTTCATACCTTAAATAAGAC
1704206 AAGCATCGATTCTCGTAACAGTCTC
451 AAGCATCGATTCTCGTAACAGTCTC
* * * *
1704231 CATTCTTTTCAAGACTGGGAAGCCAAAAACACATTCCCTCCTTTAGGAATCATGACATTGATGCT
1 CATTCTTTTCAAGACTAGGAAGCCAAAAGCACATTCCCTTCATTAGGAA--ATGACATTGATGCT
* * * *
1704296 TTGGGGTCACAAGAAAAGCTTTTCTTTTCACCATTTTTCATAGAATCAAAGTTTGTCTCTTAAAT
64 TTGGTGTCGCAAGAAAAGCTTTTCTTTTCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* * * * * * *
1704361 ATGACAAACTTGAATACTCATACTAATCCTCGA-CCTTTTCAGGATTAGGTATCATAAACGTACT
129 ATGAAAAACATGAATACTCACACTAATCC-C-ATCCTTTTCAGGATTAGGCACCATAAACATAGT
* * * * * **
1704425 GTTTTAATTAGGATACACGATATTGATGCTTTAGTTT--C--GTAAGGCATTTTTCCCACCAAAA
192 CTTATCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATT
* * * *
1704486 TTCGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCCAGAAATGATCTTCATTCA
257 TTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCA
*
1704551 TTTTGTGATTAGGCAC-GTAAACACATTCTCCTCATTAAGATAAATGATATTGATG
322 TTTTGTGATTAGGCACTGTAAACACATTCTCCTCATTAGGATAAATGATATTGATG
1704606 CTTTGGTGTC
Statistics
Matches: 3202, Mismatches: 426, Indels: 179
0.84 0.11 0.05
Matches are distributed among these distances:
472 36 0.01
473 180 0.06
474 228 0.07
475 278 0.09
476 383 0.12
477 603 0.19
478 865 0.27
479 299 0.09
480 88 0.03
481 163 0.05
482 79 0.02
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.35
Consensus pattern (475 bp):
CATTCTTTTCAAGACTAGGAAGCCAAAAGCACATTCCCTTCATTAGGAAATGACATTGATGCTTT
GGTGTCGCAAGAAAAGCTTTTCTTTTCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAT
GAAAAACATGAATACTCACACTAATCCCATCCTTTTCAGGATTAGGCACCATAAACATAGTCTTA
TCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTG
TAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTT
GTGATTAGGCACTGTAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTTTGC
ATGAGAATCTTTTCTTTGCCCTATTTTCCTTCAAATCAAAGTTCATACCTTAAATAAGACAAGCA
TCGATTCTCGTAACAGTCTC
Found at i:1704901 original size:158 final size:156
Alignment explanation
Indices: 1704465--1706831 Score: 495
Period size: 158 Copynumber: 14.9 Consensus size: 156
1704455 TTAGTTTCGT
** *
1704465 AAGGCATTTTTCCCACCAAAATTCGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAA-TATGGA
1 AAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTC-TGCCTCAAATGAGACAAACT-TGGA
* * * * *
1704529 TTCCAGAAATGATCTTCATTCATTTTGTGATTAGGCACGTAAACACATTCTCCTCATTAAGATAA
64 TTCTAGTAACGATCTTCATTCATTTTGTGATTAGGCACATAAACACATTCTCCTCATTAGGATAA
1704594 ATGATATTGATGCTTTGGTGTCGCAAGA
129 ATGATATTGATGCTTTGGTGTCGCAAGA
* ** ** * * *
1704622 AAAGTTTTTCTTTTCACC-GTTTTTGATAGAA-T-TAAAGTT-TGTCTCTTAAAT-ACGATAAAC
1 AAGGCATTT-TTCCCACCAATTTTTG-TA-AAGTCT-AAGTTCTG-C-CTCAAATGA-GACAAAC
* * * * * ** * ** * *
1704682 ATGTATACTCA-T-ACTAATC-CCAGTT-ATTTTCAGGTTTCGCACCATAAACATC-GTCTTCTC
59 TTGGATTCT-AGTAAC-GATCTTCA-TTCATTTTGTGATTAGGCA-CATAAACA-CATTCTCCTC
* * * *
1704742 ATTAGGACACATCATATTGATGCTTTGG-GTTTGCAAGA
119 ATTAGGATAAATGATATTGATGCTTTGGTG-TCGCAAGA
*
1704780 AAGGCATTTTTCCCGCCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACTTGGAT
1 AAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTC-TGCCTCAAATGAGACAAACTTGGAT
*
1704845 TCTAGTAACGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTGGGATAA
65 TCTAGTAACGATCTTCATTCATTTTGTGATTAGGCAC-ATAAACACATTCTCCTCATTAGGATAA
* ** * * *
1704910 ATGATATTGATGATTTTCTTTTGCATGCA
129 ATGATATTGATGCTTTGGTGTCGCAAG-A
* * ** * * * * * * * *
1704939 AA-TCCTTTCTTTGC-CCTATTTTCCT-TTACGTCAAAGTTCATGCCAT-AAATAAGCCAAGCAT
1 AAGGCATTT-TTCCCACCAATTTT--TGTAAAGTCTAAGTTC-TGCC-TCAAATGAGACAAACTT
* * * * * ** * * *
1705000 CGATTCTTGCAACAGA-CTCCGTTC-TTTTCAAGACTAGGAAGCCAAAAACACATTC-CCTTCAT
61 GGATTCTAGTAAC-GATCTTCATTCATTTT-GTGATTAGGCA--CATAAACACATTCTCC-TCAT
* * * *
1705062 TAGGATACATCACATTGCTGCTTTGGTGTCGCAAGA
121 TAGGATAAATGATATTGATGCTTTGGTGTCGCAAGA
* * * * * * * *
1705098 AAAGCTTTTCTTTCCATCGA--TTTGATAGAGTCAAAGTT-TGTCTTTTACAAAT--GACAAACA
1 AAGGCATTT-TTCCCACCAATTTTTG-TAAAGTCTAAGTTCTG-C--CT-CAAATGAGACAAAC-
* * * ** * * *
1705158 TT-AATACTCA-T-ACTAATCCCCATTC-TTTTCAG-GATTAGGCACCATAAACATAGTCTTCTC
59 TTGGATTCT-AGTAAC-GATCTTCATTCATTTT--GTGATTAGGCA-CATAAACACATTCTCCTC
* * *
1705218 ATTAGGATACAGGATATTGATGCTTTGGTCTCGCAAGA
119 ATTAGGATAAATGATATTGATGCTTTGGTGTCGCAAGA
* * ** *
1705256 AAGGCATTTTTGCCATCAATTTCAGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGAT
1 AAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTC-TGCCTCAAATGAGACAAACTTGGAT
* * * * * *
1705321 TCTAGTAATGATCTTCATTCATTTTGGGATTAGGTACTGTAAACACATTGTCCTCATTAGCATAA
65 TCTAGTAACGATCTTCATTCATTTTGTGATTAGGCAC-ATAAACACATTCTCCTCATTAGGATAA
* ** * * **
1705386 ATGATATTGATGGTTTTTTTTTGCTTGGA
129 ATGATATTGATGCTTTGGTGTCGC-AAGA
** ** * * * * * * * *
1705415 AATCCATTTCTTTGC-CCTATTTTCCTTTAAA-TCAAAGTTCATACCAT-AAATAAGGCAAGCAT
1 AAGGCATTT-TTCCCACCAATTTT--TGTAAAGTCTAAGTTC-TGCC-TCAAATGAGACAAACTT
* * * * ** *
1705477 CGATTCTTGTAAC-AGTCTCCATT-TTTTTCAAGATTAGGAAGCCA-AAAGCACATTC-CCTTCA
61 GGATTCTAGTAACGA-TCTTCATTCATTTT-GTGATTAGGCA--CATAAA-CACATTCTCC-TCA
* * * *
1705538 TTAGGATACATGACATGGATGCTTTGGTGTCGCGAGA
120 TTAGGATAAATGATATTGATGCTTTGGTGTCGCAAGA
** * * * * * * * * * *
1705575 AATACTTTTTTTTTCCACC-GTTGTTGATAGAA-TCAAAGTTTTTCTCTTAAAT-ATGAAAAACA
1 AAGGC--ATTTTTCCCACCAATTTTTG-TA-AAGTCTAAGTTCTGC-CTCAAATGA-GACAAACT
* ** * * * * * * ** *
1705637 TGAACACTCA-CACCGATGC-CCATCCTTTTTAG-GATTAGGCACCATAAACATAGCCTTCTCAT
60 TGGATTCT-AGTAACGAT-CTTCATTCATTTT-GTGATTAGGCA-CATAAACACATTCTCCTCAT
* * * *
1705699 TAAGATACATAATATTGATGCTTTGGTTTCAG-AAGA
121 TAGGATAAATGATATTGATGCTTTGGTGTC-GCAAGA
* * * * *
1705735 AAGGTATTTTTCCCACCAATTTTTGTAAAGTCTATGTT-TGTATCTCAAATGAAACAAACGTGGA
1 AAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCTG--CCTCAAATGAGACAAACTTGGA
* * * *
1705799 TGCTAAG-AATGATCTTCATTCAATTTGTGATTAGGCACTGTAAACACATTCTCCTCATTAGGAT
64 TTCT-AGTAACGATCTTCATTCATTTTGTGATTAGGCAC-ATAAACACATTCTCCTCATTAGGAT
* * * * * *
1705863 AAATGATTTTGATGACTTT-CTATTGCATGGG
127 AAATGATATTGATG-CTTTGGTGTCGCA-AGA
* * ** * * * * * * *
1705894 AA-TCTTTTCTTTGC-CCTATTTTCCT-TCAAA-TCAAAATTCATACCTTAAATAAGACAAACAT
1 AAGGCATTT-TTCCCACCAATTTT--TGT-AAAGTCTAAGTTC-TGCCTCAAATGAGACAAACTT
* * * * * * * * * *
1705955 CGATTCTTGTAA-TAGTCTCCATTC-TTTTCAG-GACTGGGAAGCCAAAAAACACAATC-CTTTC
61 GGATTCTAGTAACGA-TCTTCATTCATTTT--GTGATTAGGCA--C-ATAAACACATTCTC-CTC
* * * *
1706016 ATTAGGATACAGGACATTGAAGCTTTGGTGTCGCAAGA
119 ATTAGGATAAATGATATTGATGCTTTGGTGTCGCAAGA
* * * * * * * *
1706054 AAAGCTTTTCTTTCCACC-ATTTTTGATAGAGTCAAAGTT-TGTCTCTTAAAT-ATGAAAAACAT
1 AAGGCATTT-TTCCCACCAATTTTTG-TAAAGTCTAAGTTCTG-C-CTCAAATGA-GACAAACTT
* * * ** * ** * *
1706116 GAATACTCA-T-ACTAATCCCCGTTC-TTTTCAAGATTAGGCACCATAAACATAGTT-TTCTCAT
61 GGATTCT-AGTAAC-GATCTTCATTCATTTT-GTGATTAGGCA-CATAAACACA-TTCTCCTCAT
* * * * *
1706177 TAGGATACATCATATTGATGCTTTGGT-TATGTAGGA
121 TAGGATAAATGATATTGATGCTTTGGTGT-CGCAAGA
* * * *
1706213 CATGCATTTTTCCCCCCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGAT
1 AAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTC-TGCCTCAAATGAGACAAACTTGGAT
* * *
1706278 TCTAGTAATGATCTTCATTCATTTTGTGAGTAGGCACTACAAACACATTCTCCTCATTAGGATAA
65 TCTAGTAACGATCTTCATTCATTTTGTGATTAGGCAC-ATAAACACATTCTCCTCATTAGGATAA
* * ** * * *
1706343 ATGATACTGA-GTATTTTCTTTTGCATGGA
129 ATGATATTGATG-CTTTGGTGTCGCA-AGA
* * * ** * * ** * * * *
1706372 AA-TCTTTTCTTTGCC-TTACTTTCCTT-TAAA-TCAAAGTTCATATCTTAAA-AAAAGCAAGCA
1 AAGGC-ATT-TTTCCCACCAATTT--TTGTAAAGTCTAAGTTC-TGCCTCAAATGAGA-CAAAC-
* * * * * * * **
1706432 TT-GATTCTTGTAACAATCTCCATTC-TTTTCAG-GACTGGGAAGCCAAAAACACATTCTTTTCA
59 TTGGATTCTAGTAACGATCTTCATTCATTTT--GTGATTAGGCA--CATAAACACATTCTCCTCA
* * * * *
1706494 TTAGGATACAGGACATTGAAGCTTTGGTATCGCAAGA
120 TTAGGATAAATGATATTGATGCTTTGGTGTCGCAAGA
* * * * * * *
1706531 AAAGCTTTTCTTTCCACC-GTTTTTGATAGAGTCAAAGTT-TGTCTCTTAAAT-ACGACAAACAT
1 AAGGCATTT-TTCCCACCAATTTTTG-TAAAGTCTAAGTTCTG-C-CTCAAATGA-GACAAAC-T
* * * ** *
1706593 T-AATACTCA-T-ACTAATCCCCATTC-TTTTCAG-GATTAGGCACCAT-AA-ACATTGCCTTCT
60 TGGATTCT-AGTAAC-GATCTTCATTCATTTT--GTGATTAGGCA-CATAAACACATT--CTCCT
* * * *
1706651 CATTAGGATACACGATATTGATGCTTTGGTTTCTCAAGA
118 CATTAGGATAAATGATATTGATGCTTTGGTGTCGCAAGA
* ** * * * *
1706690 TAGGCATTTTTCCCATGAATTTTAGTAAAGTCTAAGTTCATGCCTTAAATGAGACAAACATGGAA
1 AAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTC-TGCCTCAAATGAGACAAACTTGGAT
* *
1706755 TCTAGTAATGATCTTCTTTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAA
65 TCTAGTAACGATCTTCATTCATTTTGTGATTAGGCAC-ATAAACACATTCTCCTCATTAGGATAA
1706820 ATGATATTGATG
129 ATGATATTGATG
1706832 ATTTTTTTGG
Statistics
Matches: 1585, Mismatches: 446, Indels: 357
0.66 0.19 0.15
Matches are distributed among these distances:
156 10 0.01
157 105 0.07
158 577 0.36
159 386 0.24
160 295 0.19
161 196 0.12
162 16 0.01
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (156 bp):
AAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCTGCCTCAAATGAGACAAACTTGGATT
CTAGTAACGATCTTCATTCATTTTGTGATTAGGCACATAAACACATTCTCCTCATTAGGATAAAT
GATATTGATGCTTTGGTGTCGCAAGA
Found at i:1706176 original size:478 final size:477
Alignment explanation
Indices: 1704569--1707078 Score: 3421
Period size: 477 Copynumber: 5.3 Consensus size: 477
1704559 TTAGGCACGT
* * * *
1704569 AAACACATTCTCC-TCATTAAGATAAATGATATTGATGCTTTGGTGTCGCAAGAAAAGTTTTTCT
1 AAACACATTC-CCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCT
* * * * *
1704633 TTTCACCGTTTTTGATAGAATTAAAGTTTGTCTCTTAAATACGATAAACATGTATACTCATACTA
65 TTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGAAAAACATGAATACTCATACTA
* ** * *
1704698 AT-CCCAGTTATTTTCAGG-TTTCGCACCATAAACATCGTCTTCTCATTAGGACACATCATATTG
130 ATCCCCA-TTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTG
*
1704761 ATGCTTTGGGTTT-GCAAGAAAGGCATTTTTCCCGCCAATTTTTGTAAAGTCTAAGTTCATGCCT
194 ATGCTTT-GGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCT
* *
1704825 CAAATGAGACAAACTTGGATTCTAGTAACGATCTTCATTCATTTTGTGATTAGGCACTATAAACA
258 CAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACA
* *
1704890 CATTCTCCTCATTGGGATAAATGATATTGATGATTTTCTTTTGCATGCAAATCCTTTCTTTGCCC
323 CATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCCTTTCTTTGCCC
** * * * * *
1704955 TATTTTCCTTTACGTCAAAGTTCATGCCATAAATAAGCCAAGCATCGATTCTTGCAACAGACTCC
388 TATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTTGTAACAGTCTCC
*
1705020 GTTCTTTTCAAGACTAGGAAGCCAA
453 ATTCTTTTCAAGACTAGGAAGCCAA
* *
1705045 AAACACATTCCCTTCATTAGGATACATCACATTGCTGCTTTGGTGTCGCAAGAAAAGCTTTTCTT
1 AAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT
* * * * * *
1705110 TCCATCG-ATTTGATAGAGTCAAAGTTTGTCTTTTACAA-ATGACAAACATTAATACTCATACTA
66 TCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTA-AATATGAAAAACATGAATACTCATACTA
**
1705173 ATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACAGGATATTGA
130 ATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGA
* * * **
1705238 TGCTTTGGTCTCGCAAGAAAGGCATTTTTGCCATCAATTTCAGTAAAGTCTAAGTTCATGCCTCA
195 TGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCA
* * *
1705303 AATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGGGATTAGGTACTGTAAACACA
260 AATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACA
* * * * *
1705368 TTGTCCTCATTAGCATAAATGATATTGATGGTTTTTTTTTGCTTGGAAATCCATTTCTTTGCCCT
325 TTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCC-TTTCTTTGCCCT
* *
1705433 ATTTTCCTTTAAATCAAAGTTCATACCATAAATAAGGCAAGCATCGATTCTTGTAACAGTCTCCA
389 ATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTTGTAACAGTCTCCA
* *
1705498 TTTTTTTCAAGATTAGGAAGCCAA
454 TTCTTTTCAAGACTAGGAAGCCAA
* * * *
1705522 AAGCACATTCCCTTCATTAGGATACATGACATGGATGCTTTGGTGTCGCGAGAAATA-CTTTTTT
1 AAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAA-AGC-TTTTC
* * * * *
1705586 TTTCCACCGTTGTTGATAGAATCAAAGTTTTTCTCTTAAATATGAAAAACATGAACACTCACACC
64 TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGAAAAACATGAATACTCATACT
* * * * * * *
1705651 GATGCCCATCCTTTTTAGGATTAGGCACCATAAACATAGCCTTCTCATTAAGATACATAATATTG
129 AATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTG
* * ** **
1705716 ATGCTTTGGTTTCAG-AAGAAAGGTATTTTTCCCACCAATTTTTGTAAAGTCTATGTTTGTATCT
194 ATGCTTTGGTTTC-GCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCT
* * * * *
1705780 CAAATGAAACAAACGTGGATGCTAAG-AATGATCTTCATTCAATTTGTGATTAGGCACTGTAAAC
258 CAAATGAGACAAACATGGATTCT-AGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAAC
* * * * *
1705844 ACATTCTCCTCATTAGGATAAATGATTTTGATGACTTTCTATTGCATGGGAATCTTTTCTTTGCC
322 ACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCCTTTCTTTGCC
* * * *
1705909 CTATTTTCCTTCAAATCAAAATTCATACCTTAAATAAGACAAACATCGATTCTTGTAATAGTCTC
387 CTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTTGTAACAGTCTC
* *
1705974 CATTCTTTTCAGGACTGGGAAGCCAAA
452 CATTCTTTTCAAGACTAGGAAGCC-AA
* * * *
1706001 AAACACAATCCTTTCATTAGGATACAGGACATTGAAGCTTTGGTGTCGCAAGAAAAGCTTTTCTT
1 AAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT
* *
1706066 TCCACCATTTTTGATAGAGTCAAAGTTTGTCTCTTAAATATGAAAAACATGAATACTCATACTAA
66 TCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGAAAAACATGAATACTCATACTAA
* * *
1706131 TCCCCGTTCTTTTCAAGATTAGGCACCATAAACATAGTTTTCTCATTAGGATACATCATATTGAT
131 TCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGAT
* * * * * *
1706196 GCTTTGGTTAT-GTAGGACATGCATTTTTCCCCCCAATTTTTGTAAAGTCTAAGTTCTTGCCTCA
196 GCTTTGGTT-TCGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCA
* *
1706260 AATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAGTAGGCACTACAAACACA
260 AATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACA
* * *
1706325 TTCTCCTCATTAGGATAAATGATACTGA-GTATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTT
325 TTCTCCTCATTAGGATAAATGATATTGATG-ATTTTCTTTTGCATGGAAATCCTTTCTTTGCCCT
* * * * *
1706389 ACTTTCCTTTAAATCAAAGTTCATATCTTAAA-AAAAGCAAGCATTGATTCTTGTAACAATCTCC
389 ATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGA-CAAGCATCGATTCTTGTAACAGTCTCC
* *
1706453 ATTCTTTTCAGGACTGGGAAGCCAA
453 ATTCTTTTCAAGACTAGGAAGCCAA
** * * *
1706478 AAACACATTCTTTTCATTAGGATACAGGACATTGAAGCTTTGGTATCGCAAGAAAAGCTTTTCTT
1 AAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT
* * * *
1706543 TCCACCGTTTTTGATAGAGTCAAAGTTTGTCTCTTAAATACGACAAACATTAATACTCATACTAA
66 TCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGAAAAACATGAATACTCATACTAA
* *
1706608 TCCCCATTCTTTTCAGGATTAGGCACCATAAACATTGCCTTCTCATTAGGATACA-CGATATTGA
131 TCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATC-ATATTGA
* * ** * *
1706672 TGCTTTGGTTTCTCAAGATAGGCATTTTTCCCATGAATTTTAGTAAAGTCTAAGTTCATGCCTTA
195 TGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCA
* *
1706737 AATGAGACAAACATGGAATCTAGTAATGATCTTCTTTCATTTTGTGATTAGGCACTATAAACACA
260 AATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACA
*
1706802 TTCTCCTCATTAGGATAAATGATATTGATGATTTT-TTTGGCATGGAAATCCTTTCTTTGCCCTA
325 TTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCCTTTCTTTGCCCTA
* * * *
1706866 TTTTCCTATAAATCAAAGTTCATACCTTAAATAAGGCCAGCATCGATTCTTGCAACAGTCTCCAT
390 TTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTTGTAACAGTCTCCAT
1706931 TCTTTTCAAGACTAGGAAGCCAA
455 TCTTTTCAAGACTAGGAAGCCAA
* * * *
1706954 AAGCACATTCCCTTCTTTAGGATACATGACATTGATGCTTTGGTGTCGCGAGAAATA-CTTTTTT
1 AAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAA-AGC-TTTTC
* * *
1707018 TTTCCACCGTTGTTGATAGAATCGAAGTTTGTCTCTTAAATATGAAAAACATGAACACTCA
64 TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGAAAAACATGAATACTCA
1707079 CACCGATGCC
Statistics
Matches: 1782, Mismatches: 227, Indels: 49
0.87 0.11 0.02
Matches are distributed among these distances:
475 63 0.04
476 416 0.23
477 538 0.30
478 460 0.26
479 302 0.17
480 3 0.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.35
Consensus pattern (477 bp):
AAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT
TCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGAAAAACATGAATACTCATACTAA
TCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGAT
GCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAA
ATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAT
TCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCCTTTCTTTGCCCTAT
TTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTTGTAACAGTCTCCATT
CTTTTCAAGACTAGGAAGCCAA
Found at i:1708013 original size:160 final size:157
Alignment explanation
Indices: 1707363--1709071 Score: 519
Period size: 158 Copynumber: 10.7 Consensus size: 157
1707353 GTAATAGTCT
* *
1707363 CCATTCTTTTCAGGACTGGGAAGCCAAAAAACACAATCCTT-TCATTAGGATACAGGACATTGAA
1 CCATTCTTTTCAGGACTAGGAA-CC-AAAAACAC-ATTCTTCTCATTAGGATACAGGACATTGAA
*
1707427 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAGTCAAAGTTTGTCTCTTA
63 GCTTTGGTATCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG-TAGAGTCAAAGTTTGTCTCTTA
*
1707492 AATATGAAAAACATGAATACTCATACTAATCC
127 AATA-GACAAACATGAATACTCATACTAATCC
* * * * * * ** * *
1707524 CCGTTCTTTTCAAGATTAGGCACCATAAACATAGTT-TTCTCATTAGGATACATCATATTGATGC
1 CCATTCTTTTCAGGACTAGGAACCAAAAACACA-TTCTTCTCATTAGGATACAGGACATTGAAGC
* * * * * * * * * *
1707588 TTTGGTTAT-GTAGGACATGCATTT-TTCCCCCCAATTTTTGTAAAGTCTAAGTTCT-TGC-CTC
65 TTTGG-TATCGCAAGAAAAGCTTTTCTTTCCACC-ATTTTTGTAGAGTCAAAGTT-TGT-CTCTT
* * * * *
1707649 AAATGAGACAAACATGGATTCT-AGTAATGATCT
126 AAAT-AGACAAACATGAATACTCA-TACTAATCC
* * * * * * * * * *
1707682 TCATTCATTTT--GTGAGTAGGCACTACAAACACATTCTCCTCATTAGGATAAATGATACTG-AG
1 CCATTC-TTTTCAG-GACTAGGAACCAAAAACACATTCTTCTCATTAGGATACAGGACATTGAAG
* ** * * * ** * * ** *
1707744 TATTTTCTTTTGCATGGGAATCTTTTCTTTGCCTTA-C-TTTCCTT-TA-AATCAAAGTTCATAT
64 -CTTTGGTATCGCAAGAAAAGCTTTTCTTT-CC--ACCATTT--TTGTAGAGTCAAAGTTTGTCT
* * * * ** *
1707805 CTTAAAAAAAGCAAGCATTG-ATTCTTGTAAC-AATCT
123 CTTAAATAGA-CAAACA-TGAATACTCAT-ACTAATCC
* *
1707841 CCATTCTTTTCAGGACTGGGAAGCCAAAAACACATTCTTTTCATTAGGATACAGGACATTGAAGC
1 CCATTCTTTTCAGGACTAGGAA-CCAAAAACACATTCTTCTCATTAGGATACAGGACATTGAAGC
*
1707906 TTTGGTATCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAGTCAAAGTTTGTCTCTTAAA
65 TTTGGTATCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG-TAGAGTCAAAGTTTGTCTCTTAAA
*
1707971 TACGACAAACATTAATACTCATACTAATCC
129 TA-GACAAACATGAATACTCATACTAATCC
* * * * * * *
1708001 CCATTATTTTCAGGATTAGGCACC-ATAA-ACATTGCCTTCTCATTAGGATACACGATATTGATG
1 CCATTCTTTTCAGGACTAGGAACCAAAAACACATT--CTTCTCATTAGGATACAGGACATTGAAG
* * * * * ** * * * *
1708064 CTTTGGT-TTGTCAAGATAGGCATTT-TTCCCATGAATTTTAGAAAAGTCTAAGTTCATG-C-CT
64 CTTTGGTATCG-CAAGAAAAGCTTTTCTTTCCA-CCATTTTTGTAGAGTCAAAGTT--TGTCTCT
* * *
1708125 TAAATGAGACAAACATGGAAT-CT-AGTAATGATCT
125 TAAAT-AGACAAACAT-GAATACTCA-TACTAATCC
* * * * * * * * * * *
1708159 TCTTTCATTTT--GTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATG
1 CCATTC-TTTTCAG-GACTAGGAACCAAAAACACATTCTTCTCATTAGGATACAGGACATTGAAG
* * * * * * * * * * * **
1708222 ATTT-TTTTGGCATGGAAATCCTTTCTTTGCC-CTATTTTCCTATA-AATCAAAGTTCATAC-CT
64 CTTTGGTATCGCAAGAAAAGCTTTTCTTT-CCACCATTTT--TGTAGAGTCAAAGTTTGT-CTCT
* * * * * *
1708283 TAAATAAGGCCAGCATCG-ATTCTTGCA-AC-AGTCT
125 TAAAT-AGACAAACAT-GAATAC-T-CATACTAATCC
* * * *
1708317 CCATTCTTTTCAAGACTAGGAAGCCAAAAGCACATTCCCTTCT--TTAGGATACATGACATTGAT
1 CCATTCTTTTCAGGACTAGGAA-CCAAAAACACATT--CTTCTCATTAGGATACAGGACATTGAA
* * * * * *
1708380 GCTTTGGTGTCGCGAGAAATA-CTTTTTTTTCCACCGTTGTTGATAGAATCAAAGTTTGTCTCTT
63 GCTTTGGTATCGCAAGAAA-AGCTTTTCTTTCCACCATTTTTG-TAGAGTCAAAGTTTGTCTCTT
* * * ** *
1708444 AAATATGAAAAACATGAACACTCACACCGATGC
126 AAATA-GACAAACATGAATACTCATACTAATCC
* * * * * * ** * ** * *
1708477 CCATCCTTTTTAGGATTAGGCACCATAAACATAGCCTTCTCATTAAGATACATAATATTGATGCT
1 CCATTCTTTTCAGGACTAGGAACCAAAAACACATTCTTCTCATTAGGATACAGGACATTGAAGCT
* * * * * * * *
1708542 TTGGTTTCAG-AAG-AAAGGTATTT-TTCCCACCAATTTTTGTAAAGTCTATGTTTGTTTCTCAA
66 TTGGTATC-GCAAGAAAAGCT-TTTCTTTCCACC-ATTTTTGTAGAGTCAAAGTTTGTCTCTTAA
* * * * * * * * *
1708604 ATGAAACAAACGTGGATGCTAAGAATGATCT
128 AT-AGACAAACATGAATACTCATACTAATCC
* * * * *** * * * ** *
1708635 TCATTCAATTT--GTGATTAGGCACTGTAAACACATTCTCCTCATTAGGATAAATGATTTTGATG
1 CCATTC-TTTTCAG-GACTAGGAACCAAAAACACATTCTTCTCATTAGGATACAGGACATTGAAG
* ** * * ** * * * * **
1708698 ATTTTCTATTGCATGGGAATCTTTTCTTTGCC-CTATTTTCCT-TCA-AATCAAAATTCATAC-C
64 CTTTGGTATCGCAAGAAAAGCTTTTCTTT-CCACCATTTT--TGT-AGAGTCAAAGTTTGT-CTC
* * ** * * *
1708759 TTAAATAAGACAAGCATCG-ATTCTTGTAATAGTCT
124 TTAAAT-AGACAAACAT-GAATACTCATACTAATCC
* *
1708794 CCATTCTTTTCAGGACTGGGAAGCCAAAAAACACAATCCTT-TCATTAGGATACAGGACATTGAA
1 CCATTCTTTTCAGGACTAGGAA-CC-AAAAACAC-ATTCTTCTCATTAGGATACAGGACATTGAA
* *
1708858 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAGTCAAAGTTTGTCTCTTA
63 GCTTTGGTATCGCAAGAAAAGCTTTTCTTTCCACCA-TTTTTGTAGAGTCAAAGTTTGTCTCTTA
1708923 AATATGACAAACATGAATACTCATACTAATCC
127 AATA-GACAAACATGAATACTCATACTAATCC
* * * * * * * * * **
1708955 CCGTTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGGTGCT
1 CCATTCTTTTCAGGACTAGGAACCAAAAACACATTCTTCTCATTAGGATACAGGACATTGAAGCT
* * * * *
1709020 TTGGTTTCGCAAGAAAGGC-ATT-TTTCCTACCAATTTTTGTAAAGTCTAAGTT
66 TTGGTATCGCAAGAAAAGCTTTTCTTTCC-ACC-ATTTTTGTAGAGTCAAAGTT
1709072 AATGCCTCAA
Statistics
Matches: 1110, Mismatches: 329, Indels: 221
0.67 0.20 0.13
Matches are distributed among these distances:
157 49 0.04
158 366 0.33
159 362 0.33
160 197 0.18
161 128 0.12
162 8 0.01
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (157 bp):
CCATTCTTTTCAGGACTAGGAACCAAAAACACATTCTTCTCATTAGGATACAGGACATTGAAGCT
TTGGTATCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGTAGAGTCAAAGTTTGTCTCTTAAATA
GACAAACATGAATACTCATACTAATCC
Found at i:1709022 original size:478 final size:477
Alignment explanation
Indices: 1707102--1711858 Score: 6099
Period size: 478 Copynumber: 10.0 Consensus size: 477
1707092 CCTTTTTAGG
* * **
1707102 ATTGATGCTTTGGTTTCAG-AAGAAAGGTATTTTTCCCACCAATTTTTGTAAAGTCTATGTTTGT
1 ATTGATGCTTTGGTTTC-GCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCAT
** * * * * *
1707166 ATCTCAAATGAAACAAACGTGGATGCTAAG-AATGATCTTCATTCAATTTGTGATTAGGCACTGT
65 GCCTCAAATGAGACAAACATGGATTCT-AGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
* * * *
1707230 AAACACATTCTCCTCATTAGGATAAATGATTTTGATGACTTTCTATTGCATGGGAATCTTTTCTT
129 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT
* *
1707295 TGCCCTATTTTCCTTCAAATCAAAATTCATACCTTAAATAAGACAAGCATCGATTCTTGTAATAG
194 TGCCCTATTTTCCTTCAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTTGTAACAG
* * * *
1707360 TCTCCATTCTTTTCAGGACTGGGAAGCCAAAAAACACAATCCTTTCATTAGGATACAGGACATTG
259 TCTCCATTCTTTTCAAGACTGGGAAGCC-AAAAACACATTCCCTTCATTAGGATACATGACATTG
* *
1707425 AAGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAGTCAAAGTTTGTCTCT
323 ATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCT
* * *
1707490 TAAATATGAAAAACATGAATACTCATACTAATCCCCGTTCTTTTCAAGATTAGGCACCATAAACA
388 TAAATATGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACA
*
1707555 TAGTTTTCTCATTAGGATACATC-AT
453 TAGTCTTCTCATTAGGATACA-CGAT
* * * * * *
1707580 ATTGATGCTTTGGTTAT-GTAGGACATGCATTTTTCCCCCCAATTTTTGTAAAGTCTAAGTTCTT
1 ATTGATGCTTTGGTT-TCGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCAT
* *
1707644 GCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAGTAGGCACTACA
65 GCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
* *
1707709 AACACATTCTCCTCATTAGGATAAATGATACTGA-GTATTTTCTTTTGCATGGGAATCTTTTCTT
130 AACACATTCTCCTCATTAGGATAAATGATATTGATG-ATTTTCTTTTGCATGGAAATCTTTTCTT
* * * * * *
1707773 TGCCTTACTTTCCTTTAAATCAAAGTTCATATCTTAAA-AAAAGCAAGCATTGATTCTTGTAACA
194 TGCCCTATTTTCCTTCAAATCAAAGTTCATACCTTAAATAAGA-CAAGCATCGATTCTTGTAACA
* * ** *
1707837 ATCTCCATTCTTTTCAGGACTGGGAAGCCAAAAACACATTCTTTTCATTAGGATACAGGACATTG
258 GTCTCCATTCTTTTCAAGACTGGGAAGCCAAAAACACATTCCCTTCATTAGGATACATGACATTG
* * * *
1707902 AAGCTTTGGTATCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAGTCAAAGTTTGTCTCT
323 ATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCT
* * *
1707967 TAAATACGACAAACATTAATACTCATACTAATCCCCATTATTTTCAGGATTAGGCACCATAAACA
388 TAAATATGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACA
* *
1708032 TTGCCTTCTCATTAGGATACACGAT
453 TAGTCTTCTCATTAGGATACACGAT
* ** * *
1708057 ATTGATGCTTTGGTTT-GTCAAGATAGGCATTTTTCCCATGAATTTTAGAAAAGTCTAAGTTCAT
1 ATTGATGCTTTGGTTTCG-CAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCAT
* * *
1708121 GCCTTAAATGAGACAAACATGGAATCTAGTAATGATCTTCTTTCATTTTGTGATTAGGCACTATA
65 GCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
* *
1708186 AACACATTCTCCTCATTAGGATAAATGATATTGATGATTTT-TTTGGCATGGAAATCCTTTCTTT
130 AACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTT
* * *
1708250 GCCCTATTTTCCTAT-AAATCAAAGTTCATACCTTAAATAAGGCCAGCATCGATTCTTGCAACAG
195 GCCCTATTTTCCT-TCAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTTGTAACAG
* * *
1708314 TCTCCATTCTTTTCAAGACTAGGAAGCCAAAAGCACATTCCCTTCTTTAGGATACATGACATTGA
259 TCTCCATTCTTTTCAAGACTGGGAAGCCAAAAACACATTCCCTTCATTAGGATACATGACATTGA
* * * *
1708379 TGCTTTGGTGTCGCGAGAAATA-CTTTTTTTTCCACCGTTGTTGATAGAATCAAAGTTTGTCTCT
324 TGCTTTGGTGTCGCAAGAAA-AGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCT
* * * ** * * *
1708443 TAAATATGAAAAACATGAACACTCACACCGATGCCCATCCTTTTTAGGATTAGGCACCATAAACA
388 TAAATATGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACA
* * **
1708508 TAGCCTTCTCATTAAGATACATAAT
453 TAGTCTTCTCATTAGGATACACGAT
* * **
1708533 ATTGATGCTTTGGTTTCAG-AAGAAAGGTATTTTTCCCACCAATTTTTGTAAAGTCTATGTTTGT
1 ATTGATGCTTTGGTTTC-GCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCAT
** * * * * *
1708597 TTCTCAAATGAAACAAACGTGGATGCTAAG-AATGATCTTCATTCAATTTGTGATTAGGCACTGT
65 GCCTCAAATGAGACAAACATGGATTCT-AGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
* * *
1708661 AAACACATTCTCCTCATTAGGATAAATGATTTTGATGATTTTCTATTGCATGGGAATCTTTTCTT
129 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT
* *
1708726 TGCCCTATTTTCCTTCAAATCAAAATTCATACCTTAAATAAGACAAGCATCGATTCTTGTAATAG
194 TGCCCTATTTTCCTTCAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTTGTAACAG
* * * *
1708791 TCTCCATTCTTTTCAGGACTGGGAAGCCAAAAAACACAATCCTTTCATTAGGATACAGGACATTG
259 TCTCCATTCTTTTCAAGACTGGGAAGCC-AAAAACACATTCCCTTCATTAGGATACATGACATTG
* * *
1708856 AAGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAGTCAAAGTTTGTCTCT
323 ATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCT
* *
1708921 TAAATATGACAAACATGAATACTCATACTAATCCCCGTTCTTTTCAAGATTAGGCACCATAAACA
388 TAAATATGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACA
1708986 TAGTCTTCTCATTAGGATACACGAT
453 TAGTCTTCTCATTAGGATACACGAT
* * *
1709011 ATTGGTGCTTTGGTTTCGCAAGAAAGGCATTTTTCCTACCAATTTTTGTAAAGTCTAAGTTAATG
1 ATTGATGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATG
* * *
1709076 CCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGAGTAGGCACTGTAA
66 CCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAA
* * * * * *
1709141 ACACATTCTCCTCATTAGCATAAATGACATTGACGATCTTCTTTTGCTTGGAAATCCTGTT-TTT
131 ACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAAT-CTTTTCTTT
* * * *
1709205 GCCCTATTTTCCTTCAAATCAAAGTTCCATGCCATAAATAAGACAACCATCGATTCTCGTAACAG
195 GCCCTATTTTCCTTCAAATCAAAGTT-CATACCTTAAATAAGACAAGCATCGATTCTTGTAACAG
* *
1709270 TCTCCATTCTTTTCAAGACTGGGAAGCCCAAAAA-ACTTTCCCTTCATTAGGATAAATGACATTG
259 TCTCCATTCTTTTCAAGACTGGGAAG-CCAAAAACACATTCCCTTCATTAGGATACATGACATTG
* * * *
1709334 ATGCTTTGGTGTCGCAAAAAAAGCTTTTCTTTTCACCGTTTTTGATAGAATCAATGTTTGTCTCT
323 ATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCT
** * * * *
1709399 TAAATACAACAAATAGGAGTACTCATACTAAT-CCCAGTTCTTTTTAGGATTAGGCACCATAAAC
388 TAAATATGACAAACATGAATACTCATACTAATCCCCA-TTCTTTTCAGGATTAGGCACCATAAAC
*
1709463 ATAGTCTTCTCATTAGGACACATC-AT
452 ATAGTCTTCTCATTAGGATACA-CGAT
* ** * * *
1709489 ATTAATGCTTTGGCCTCGCAGGAAATGACATTTTTCCTACCAATTTTTGTAAAGTCTAAGTTCAT
1 ATTGATGCTTTGGTTTCGCAAGAAA-GGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCAT
* * * *
1709554 GCCTCAAATGAGACAAACTTGGATTCTGGTAATGATCTTCATTCAATTTCTGATTAGGCACTATA
65 GCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
* ** * * ** *
1709619 AATACATTCTCCTTGTTAGGATAAATGATATCGATGATTTTCTTTTGCATGCAAATCCATTCCTT
130 AACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTT
* * * ** * * * *
1709684 ACCCTATTATCCCTT-AAATCAAACTTCATACCACAAATAAGCCAAGCATCAATTCTTGTAAGAA
195 GCCCTATT-TTCCTTCAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTTGTAACAG
* * * * *
1709748 ACTCCATTCTTTTCAAGACTAGGAAGCCAAAAACACATTCCCTTCAATAAGATACATGACTTTGA
259 TCTCCATTCTTTTCAAGACTGGGAAGCCAAAAACACATTCCCTTCATTAGGATACATGACATTGA
* * * * * *
1709813 TGCTTTGGTGTCACGAGAAATGCTTTTCTTTCCACTA-TTTTGATAGAATTAAAGTTTATCTCTT
324 TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTT
* * * * *
1709877 AAATATGAAAAACATGAATACTCACACTGA-CGCCCATCCTTTTCAAGATTAGGCACCATAAACA
389 AAATATGACAAACATGAATACTCATACTAATC-CCCATTCTTTTCAGGATTAGGCACCATAAACA
* * *
1709941 TAGTTTTCTTATTAGGATACACAAT
453 TAGTCTTCTCATTAGGATACACGAT
* * * * *
1709966 ATTGTTGCTTTGGTTTCGCAAGAAAGGTATTTTTCCCACCAATTTTTGTAGAGTCTATGTTCGTG
1 ATTGATGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATG
* * * *
1710031 CCTTAAATGAAACAAACATGGATTCTAGTAATGATCTTCATTCGTTTTGTGATTAGGAACTATAA
66 CCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAA
* *
1710096 ACGCATTCTCCTCATTAAGATAAATGATATTGATGATTTTCTTTTGCATAGG-AATCTTTTCTTT
131 ACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAT-GGAAATCTTTTCTTT
* * * *
1710160 GCCCTATTTTCTTTGAAATCAAAGTTCATACCTTAAATAAGATAAGCATCGATTCTCGTAACAGT
195 GCCCTATTTTCCTTCAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTTGTAACAGT
* * * * * * *
1710225 CTCCCTTCTTTTCAGGGCTGGGAAGCCCAAAACACTTTCCCTTCATTAGGATAAATGACATTGGT
260 CTCCATTCTTTTCAAGACTGGGAAGCCAAAAACACATTCCCTTCATTAGGATACATGACATTGAT
* *
1710290 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTTCACCATTTTTGATAGAATCAAAGTTTGTCTTTTA
325 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTA
** * * *
1710355 AATACAACAAACA-CATATACTCGTACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACAT
390 AATATGACAAACATGA-ATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACAT
* *
1710419 AGTCTTCTTATTAGGATACATTG-T
454 AGTCTTCTCATTAGGATACA-CGAT
* * * * * *
1710443 ATTGATGCTTTGGTTTCACAAGAAAGGCATTTTTCCCTCAAATTTTTGTAAAGTTTAAGATAATG
1 ATTGATGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATG
* **
1710508 CCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTAATTCATTTCATGATTAGGCCACTATA
66 CCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGG-CACTATA
* ** * *
1710573 AACACATTCTCCTCCTTAGGATAAATGATATTGACAATTTTCTGTTGCATGGAAATCTTTTCTCT
130 AACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTT
* * * * *
1710638 GCCCTATTTTCTTTCGAATCAAAGTTCATACCTTAAATAAGACAAGCGTTGATTCTCGTAACAGT
195 GCCCTATTTTCCTTCAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTTGTAACAGT
* *
1710703 CTCCATTCTTTTCAAGACTGGGAAGCCAAAATCAC-TATCCCTTCATTAGGATA-ATTGACTTTG
260 CTCCATTCTTTTCAAGACTGGGAAGCCAAAAACACAT-TCCCTTCATTAGGATACA-TGACATTG
* * * *
1710766 ATGCTTTTGTGCCGCAAGAAAAGCTTTTATTTTCACCATTTTTGATAGAATCAAAGTTTGTCTCT
323 ATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCT
* * * * ** *
1710831 TAAAAACGACAAACGTGTAA-ACTCATACTAGTCCCTGTTCTTTTCAGGATTAGGCACCATAACC
388 TAAATATGACAAACATG-AATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAAC
*
1710895 ATAGTCTTCTTATTAGGATACATC-AT
452 ATAGTCTTCTCATTAGGATACA-CGAT
* * * *
1710921 GTTGATGCTTTTGG-TTCGCAAGAAAGGTAGTTTTCCCACCAATTTTTGTAAAGTCTAAG-TAAT
1 ATTGATGC-TTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCAT
* *
1710984 GCCTCAAATGAGACAAACTTGGATTCTAGTAATGATGTTCATTCATTTTGTGATTAGGCACTATA
65 GCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
* * *
1711049 AACAGATTCTCTTCATTAGGATAAATGATATTGA-GTATTTTCTTTTGCATGGAAATCCTTTCTT
130 AACACATTCTCCTCATTAGGATAAATGATATTGATG-ATTTTCTTTTGCATGGAAATCTTTTCTT
* * * * *
1711113 TACCCTATTTTCCCTT-AAATCAAAGTTCATAGCATAAACAAGCCAAGCATCGATTCTTGTAACA
194 TGCCCTATTTT-CCTTCAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTTGTAACA
** * * * *
1711177 AACTCCATTCTTTTCAAGACTAGGAAGCCAAAAACACATT-CCTTAACTAGGATACGTGACATTG
258 GTCTCCATTCTTTTCAAGACTGGGAAGCCAAAAACACATTCCCTTCATTAGGATACATGACATTG
* * * *
1711241 ATGCTTTTGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAGTC-AAGTTTATCTC-
323 ATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCT
* **
1711304 TAGAATATCACAAACATGAATACTCATACTAATCCCTGTTCTTTTCAGGATTAGGCACCATAAAC
388 TA-AATATGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAAC
1711369 ATAGTCTTCTCATTAGGATACACGAT
452 ATAGTCTTCTCATTAGGATACACGAT
* * * * **
1711395 ATTGATGCTTTGGTTTCGCAAGAAAGCCGTTTTTTCCACCAATTTTAGGGAAGTCTAAGTTCATG
1 ATTGATGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATG
* * *
1711460 CCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTTATTTTGTGATTAAGCACTGTAA
66 CCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAA
* * *
1711525 ACACATTCTCCTTATTAGGATAAATGATA-T--TGA-TTT-TTTT-AATGGAAATCCTTTCTTTG
131 ACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTG
* * * *
1711584 CACTATTTT-C--CAAATCAAAGTTCATACCATAAATAAGGCAAGCATTGATTCTTGTAACAGTC
196 CCCTATTTTCCTTCAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTTGTAACAGTC
* * * *
1711646 TCCATTTTTTTCAAGATTAGGAAGCCAAAAGCACATTCCCTTCATTAGGATACATGACATTGATG
261 TCCATTCTTTTCAAGACTGGGAAGCCAAAAACACATTCCCTTCATTAGGATACATGACATTGATG
* * *
1711711 CTTTGGTGTCGCGAGAAACA-CTTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTA
326 CTTTGGTGTCGCAAGAAA-AGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTA
* * * * * * *
1711775 AATATGAAAAACATGAACACTCACACTGATGCCCATCCTTTTTAGGATTAGGCACCATAAACATA
390 AATATGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATA
* *
1711840 GCCTTCTCATTAAGATACA
455 GTCTTCTCATTAGGATACA
1711859 TAATGATGAC
Statistics
Matches: 3716, Mismatches: 502, Indels: 132
0.85 0.12 0.03
Matches are distributed among these distances:
466 79 0.02
467 66 0.02
468 83 0.02
469 27 0.01
470 4 0.00
471 3 0.00
472 1 0.00
473 11 0.00
474 131 0.04
475 160 0.04
476 831 0.22
477 833 0.22
478 1244 0.33
479 235 0.06
480 8 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (477 bp):
ATTGATGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATG
CCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAA
ACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTG
CCCTATTTTCCTTCAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTTGTAACAGTC
TCCATTCTTTTCAAGACTGGGAAGCCAAAAACACATTCCCTTCATTAGGATACATGACATTGATG
CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAA
ATATGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAG
TCTTCTCATTAGGATACACGAT
Found at i:1709144 original size:954 final size:951
Alignment explanation
Indices: 1707102--1711858 Score: 6044
Period size: 954 Copynumber: 5.0 Consensus size: 951
1707092 CCTTTTTAGG
* **
1707102 ATTGATGCTTTGGTTTCAG-AAGAAAGGTATTTTTCCCACCAATTTTTGTAAAGTCTATGTTTGT
1 ATTGATGCTTTGGTTTC-GCAAGAAAGGTATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTAAT
** * * * * *
1707166 ATCTCAAATGAAACAAACGTGGATGCTAAG-AATGATCTTCATTCAATTTGTGATTAGGCACTGT
65 GCCTCAAATGAGACAAACATGGATTCT-AGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
* * * *
1707230 AAACACATTCTCCTCATTAGGATAAATGATTTTGATGACTTTCTATTGCATGGGAATCTTTTCTT
129 AAACACATTCTCCTCATTAGGATAAATGATATTGATGA-TTT-TTTTGCATGGAAATCCTTTCTT
* *
1707295 TGCCCTATTTTCCTTCAAATCAAAATTCATACCTTAAATAAGACAAGCATCGATTCTTGTAATAG
192 TGCCCTATTTTCCTTCAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTTGTAACAG
* * * *
1707360 TCTCCATTCTTTTCAGGACTGGGAAGCCAAAAAACACAATCCTTTCATTAGGATACAGGACATTG
257 TCTCCATTCTTTTCAAGACTGGGAAGCC--AAAACACATTCCCTTCATTAGGATACATGACATTG
* * *
1707425 AAGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAGTCAAAGTTTGTCTCT
320 ATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCT
* * *
1707490 TAAATATGAAAAACATGAATACTCATACTAATCCCCGTTCTTTTCAAGATTAGGCACCATAAACA
385 TAAATATCAAAAACATGAATACTCATACTAAT-CCCATTCTTTTCAGGATTAGGCACCATAAACA
* * * * * *
1707555 TAGTTTTCTCATTAGGATACATCATATTGATGCTTTGG-TT-ATGTAGGACATGCATTTTTCCCC
449 TAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCA-GCAAGAAAGGCATTTTTCCCA
*
1707618 CCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTT
513 CCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTT
* * * *
1707683 CATTCATTTTGTGAGTAGGCACTACAAACACATTCTCCTCATTAGGATAAATGATACTGA-GTAT
578 CATTCAATTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATG-AT
* * * * *
1707747 TTTCTTTTGCATGGGAATCTTTTCTTTGCCTTACTTTCCTTTAAATCAAAGTTCATATCTTAAA-
642 TTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTCAAATCAAAGTTCATACCTTAAAT
* * *
1707811 AAAAGCAAGCATTGATTCTTGTAACAATCTCCATTCTTTTCAGGACTGGGAAGCCAAAAACACAT
707 AAGA-CAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGACTGGGAAGCCAAAAACACAT
** * * * *
1707876 TCTTTTCATTAGGATACAGGACATTGAAGCTTTGGTATCGCAAGAAAAGCTTTTCTTTCCACCGT
771 TCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCAT
* * *
1707941 TTTTGATAGAGTCAAAGTTTGTCTCTTAAATACGACAAACATTAATACTCATACTAATCCCCATT
836 TTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCATACTAATCCCCATT
* * *
1708006 ATTTTCAGGATTAGGCACCATAAACATTGCCTTCTCATTAGGATACACGAT
901 CTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGAT
* * ** * * *
1708057 ATTGATGCTTTGGTTT-GTCAAGATAGGCATTTTTCCCATGAATTTTAGAAAAGTCTAAGTTCAT
1 ATTGATGCTTTGGTTTCG-CAAGAAAGGTATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTAAT
* * *
1708121 GCCTTAAATGAGACAAACATGGAATCTAGTAATGATCTTCTTTCATTTTGTGATTAGGCACTATA
65 GCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
1708186 AACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTGGCATGGAAATCCTTTCTTTG
130 AACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTT-GCATGGAAATCCTTTCTTTG
* * *
1708251 CCCTATTTTCCTAT-AAATCAAAGTTCATACCTTAAATAAGGCCAGCATCGATTCTTGCAACAGT
194 CCCTATTTTCCT-TCAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTTGTAACAGT
* *
1708315 CTCCATTCTTTTCAAGACTAGGAAGCCAAAAGCACATTCCCTTCTTTAGGATACATGACATTGAT
258 CTCCATTCTTTTCAAGACTGGGAAGCCAAAA-CACATTCCCTTCATTAGGATACATGACATTGAT
* * *
1708380 GCTTTGGTGTCGCGAGAAATA-CTTTTTTTTCCACCGTTGTTGATAGAATCAAAGTTTGTCTCTT
322 GCTTTGGTGTCGCAAGAAA-AGCTTTTTTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTT
* * * ** * *
1708444 AAATATGAAAAACATGAACACTCACACCGATGCCCATCCTTTTTAGGATTAGGCACCATAAACAT
386 AAATATCAAAAACATGAATACTCATACTAAT-CCCATTCTTTTCAGGATTAGGCACCATAAACAT
* * * *
1708509 AGCCTTCTCATTAAGATACATAATATTGATGCTTTGGTTTCAG-AAGAAAGGTATTTTTCCCACC
450 AGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCAGCAAGAAAGGCATTTTTCCCACC
* ** ** * * *
1708573 AATTTTTGTAAAGTCTATGTTTGTTTCTCAAATGAAACAAACGTGGATGCTAAG-AATGATCTTC
515 AATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCT-AGTAATGATCTTC
* *
1708637 ATTCAATTTGTGATTAGGCACTGTAAACACATTCTCCTCATTAGGATAAATGATTTTGATGATTT
579 ATTCAATTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTT
* * *
1708702 TCTATTGCATGGGAATCTTTTCTTTGCCCTATTTTCCTTCAAATCAAAATTCATACCTTAAATAA
644 TCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTCAAATCAAAGTTCATACCTTAAATAA
* * * *
1708767 GACAAGCATCGATTCTTGTAATAGTCTCCATTCTTTTCAGGACTGGGAAGCCAAAAAACACAATC
709 GACAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGACTGGGAAGCC-AAAAACACATTC
* * *
1708832 CTTTCATTAGGATACAGGACATTGAAGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTT
773 CCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTT
* * *
1708897 TTTATAGAGTCAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCATACTAATCCCCGTTCT
838 TTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCATACTAATCCCCATTCT
*
1708962 TTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGAT
903 TTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGAT
* * *
1709011 ATTGGTGCTTTGGTTTCGCAAGAAAGGCATTTTTCCTACCAATTTTTGTAAAGTCTAAGTTAATG
1 ATTGATGCTTTGGTTTCGCAAGAAAGGTATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTAATG
* * *
1709076 CCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGAGTAGGCACTGTAA
66 CCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAA
* * * *
1709141 ACACATTCTCCTCATTAGCATAAATGACATTGACGATCTTCTTTTGCTTGGAAATCCTGTT-TTT
131 ACACATTCTCCTCATTAGGATAAATGATATTGATGAT-TT-TTTTGCATGGAAATCCT-TTCTTT
* * * *
1709205 GCCCTATTTTCCTTCAAATCAAAGTTCCATGCCATAAATAAGACAACCATCGATTCTCGTAACAG
193 GCCCTATTTTCCTTCAAATCAAAGTT-CATACCTTAAATAAGACAAGCATCGATTCTTGTAACAG
* * *
1709270 TCTCCATTCTTTTCAAGACTGGGAAGCCCAAAAAACTTTCCCTTCATTAGGATAAATGACATTGA
257 TCTCCATTCTTTTCAAGACTGGGAAG-CCAAAACACATTCCCTTCATTAGGATACATGACATTGA
* * *
1709335 TGCTTTGGTGTCGCAAAAAAAGCTTTTCTTTT-CACCGTTTTTGATAGAATCAATGTTTGTCTCT
321 TGCTTTGGTGTCGCAAGAAAAGCTTTT-TTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCT
* * * *
1709399 TAAATA-CAACAAATAGGAGTACTCATACTAATCCCAGTTCTTTTTAGGATTAGGCACCATAAAC
385 TAAATATCAA-AAACATGAATACTCATACTAATCCCA-TTCTTTTCAGGATTAGGCACCATAAAC
* * ** * * *
1709463 ATAGTCTTCTCATTAGGACACATCATATTAATGCTTTGGCCTC-GCAGGAAATGACATTTTTCCT
448 ATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCAGCAAGAAA-GGCATTTTTCCC
* *
1709527 ACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACTTGGATTCTGGTAATGATCT
512 ACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCT
* * ** *
1709592 TCATTCAATTTCTGATTAGGCACTATAAATACATTCTCCTTGTTAGGATAAATGATATCGATGAT
577 TCATTCAATTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGAT
* ** * * * * **
1709657 TTTCTTTTGCATGCAAATCCATTCCTTACCCTATTATCCCTT-AAATCAAACTTCATACCACAAA
642 TTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATT-TTCCTTCAAATCAAAGTTCATACCTTAAA
* ** * ** *
1709721 TAAGCCAAGCATCAATTCTTGTAAGAAACTCCATTCTTTTCAAGACTAGGAAGCCAAAAACACAT
706 TAAGACAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGACTGGGAAGCCAAAAACACAT
* * * * * * *
1709786 TCCCTTCAATAAGATACATGACTTTGATGCTTTGGTGTCACGAGAAATGCTTTTCTTTCCACTA-
771 TCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCAT
* * * * *
1709850 TTTTGATAGAATTAAAGTTTATCTCTTAAATATGAAAAACATGAATACTCACACTGA-CGCCCAT
836 TTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCATACTAATC-CCCAT
* * * * *
1709914 CCTTTTCAAGATTAGGCACCATAAACATAGTTTTCTTATTAGGATACACAAT
900 TCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGAT
* * * **
1709966 ATTGTTGCTTTGGTTTCGCAAGAAAGGTATTTTTCCCACCAATTTTTGTAGAGTCTATGTTCGTG
1 ATTGATGCTTTGGTTTCGCAAGAAAGGTATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTAATG
* * * *
1710031 CCTTAAATGAAACAAACATGGATTCTAGTAATGATCTTCATTCGTTTTGTGATTAGGAACTATAA
66 CCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAA
* * *
1710096 ACGCATTCTCCTCATTAAGATAAATGATATTGATGATTTTCTTTTGCATAGG-AATCTTTTCTTT
131 ACACATTCTCCTCATTAGGATAAATGATATTGATGA-TTT-TTTTGCAT-GGAAATCCTTTCTTT
* * * *
1710160 GCCCTATTTTCTTTGAAATCAAAGTTCATACCTTAAATAAGATAAGCATCGATTCTCGTAACAGT
193 GCCCTATTTTCCTTCAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTTGTAACAGT
* * * * * *
1710225 CTCCCTTCTTTTCAGGGCTGGGAAGCCCAAAACACTTTCCCTTCATTAGGATAAATGACATTGGT
258 CTCCATTCTTTTCAAGACTGGGAAG-CCAAAACACATTCCCTTCATTAGGATACATGACATTGAT
*
1710290 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTT-CACCATTTTTGATAGAATCAAAGTTTGTCTTTT
322 GCTTTGGTGTCGCAAGAAAAGCTTTT-TTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTT
* * *
1710354 AAATA-CAACAAACA-CATATACTCGTACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAAC
386 AAATATCAA-AAACATGA-ATACTCATACTAAT-CCCATTCTTTTCAGGATTAGGCACCATAAAC
* ** *
1710417 ATAGTCTTCTTATTAGGATACATTGTATTGATGCTTTGGTTTCA-CAAGAAAGGCATTTTTCCCT
448 ATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCAGCAAGAAAGGCATTTTTCCCA
* * * *
1710481 CAAATTTTTGTAAAGTTTAAGATAATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTT
513 CCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTT
* * * **
1710546 AATTC-ATTTCATGATTAGGCCACTATAAACACATTCTCCTCCTTAGGATAAATGATATTGACAA
578 CATTCAATTT-GTGATTAGG-CACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGA
* * * *
1710610 TTTTCTGTTGCATGGAAATCTTTTCTCTGCCCTATTTTCTTTCGAATCAAAGTTCATACCTTAAA
641 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTCAAATCAAAGTTCATACCTTAAA
* * *
1710675 TAAGACAAGCGTTGATTCTCGTAACAGTCTCCATTCTTTTCAAGACTGGGAAGCCAAAATCAC-T
706 TAAGACAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGACTGGGAAGCCAAAAACACAT
* * * * *
1710739 ATCCCTTCATTAGGATA-ATTGACTTTGATGCTTTTGTGCCGCAAGAAAAGCTTTTATTTTCACC
771 -TCCCTTCATTAGGATACA-TGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACC
* * * * *
1710803 ATTTTTGATAGAATCAAAGTTTGTCTCTTAAAAACGACAAACGTGTAA-ACTCATACTAGTCCCT
834 ATTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATG-AATACTCATACTAATCCCC
* * *
1710867 GTTCTTTTCAGGATTAGGCACCATAACCATAGTCTTCTTATTAGGATACATC-AT
898 ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACA-CGAT
* *
1710921 GTTGATGCTTTTGG-TTCGCAAGAAAGGTAGTTTTCCCACCAATTTTTGTAAAGTCTAAG-TAAT
1 ATTGATGC-TTTGGTTTCGCAAGAAAGGTATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTAAT
* *
1710984 GCCTCAAATGAGACAAACTTGGATTCTAGTAATGATGTTCATTCATTTTGTGATTAGGCACTATA
65 GCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
* *
1711049 AACAGATTCTCTTCATTAGGATAAATGATATTGA-GTATTTTCTTTTGCATGGAAATCCTTTCTT
130 AACACATTCTCCTCATTAGGATAAATGATATTGATG-A-TTT-TTTTGCATGGAAATCCTTTCTT
* * * * *
1711113 TACCCTATTTTCCCTT-AAATCAAAGTTCATAGCATAAACAAGCCAAGCATCGATTCTTGTAACA
192 TGCCCTATTTT-CCTTCAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTTGTAACA
** * * * *
1711177 AACTCCATTCTTTTCAAGACTAGGAAGCCAAAAACACATT-CCTTAACTAGGATACGTGACATTG
256 GTCTCCATTCTTTTCAAGACTGGGAAGCC-AAAACACATTCCCTTCATTAGGATACATGACATTG
* * * * *
1711241 ATGCTTTTGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAGTC-AAGTTTATCTC-
320 ATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCT
* *
1711304 TAGAATATCACAAACATGAATACTCATACTAATCCCTGTTCTTTTCAGGATTAGGCACCATAAAC
385 TA-AATATCAAAAACATGAATACTCATACTAATCCC-ATTCTTTTCAGGATTAGGCACCATAAAC
* * *
1711369 ATAGTCTTCTCATTAGGATACA-CGATATTGATGCTTTGGTTTC-GCAAGAAAGCCGTTTTTTCC
448 ATAGTCTTCTCATTAGGATACATC-ATATTGATGCTTTGGTTTCAGCAAGAAAGGCATTTTTCCC
* **
1711432 ACCAATTTTAGGGAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCT
512 ACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCT
* * * * *
1711497 TCATTTATTTTGTGATTAAGCACTGTAAACACATTCTCCTTATTAGGATAAATGATA-T--TGA-
577 TCATTCAATTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGAT
* * * *
1711558 TTT-TTTT-AATGGAAATCCTTTCTTTGCACTATTTT-C--CAAATCAAAGTTCATACCATAAAT
642 TTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTCAAATCAAAGTTCATACCTTAAAT
* * * * *
1711618 AAGGCAAGCATTGATTCTTGTAACAGTCTCCATTTTTTTCAAGATTAGGAAGCCAAAAGCACATT
707 AAGACAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGACTGGGAAGCCAAAAACACATT
* * *
1711683 CCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCGAGAAACA-CTTTTTTTTCCACCGT
772 CCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAA-AGCTTTTCTTTCCACCAT
* * * * * *
1711747 TTTTGATAGAATCAAAGTTTGTCTCTTAAATATGAAAAACATGAACACTCACACTGATGCCCATC
836 TTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCATACTAATCCCCATT
* * *
1711812 CTTTTTAGGATTAGGCACCATAAACATAGCCTTCTCATTAAGATACA
901 CTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACA
1711859 TAATGATGAC
Statistics
Matches: 3310, Mismatches: 431, Indels: 135
0.85 0.11 0.03
Matches are distributed among these distances:
941 2 0.00
942 224 0.07
943 3 0.00
945 24 0.01
946 3 0.00
947 3 0.00
948 1 0.00
950 1 0.00
951 39 0.01
952 191 0.06
953 569 0.17
954 1080 0.33
955 632 0.19
956 307 0.09
957 226 0.07
958 5 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (951 bp):
ATTGATGCTTTGGTTTCGCAAGAAAGGTATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTAATG
CCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAA
ACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTGCATGGAAATCCTTTCTTTGCC
CTATTTTCCTTCAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTTGTAACAGTCTC
CATTCTTTTCAAGACTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTT
TGGTGTCGCAAGAAAAGCTTTTTTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
TCAAAAACATGAATACTCATACTAATCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTT
CTCATTAGGATACATCATATTGATGCTTTGGTTTCAGCAAGAAAGGCATTTTTCCCACCAATTTT
TGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCAAT
TTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTG
CATGGAAATCTTTTCTTTGCCCTATTTTCCTTCAAATCAAAGTTCATACCTTAAATAAGACAAGC
ATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGACTGGGAAGCCAAAAACACATTCCCTTCATT
AGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGA
ATCAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGA
TTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGAT
Found at i:1719803 original size:477 final size:475
Alignment explanation
Indices: 1718350--1720722 Score: 2862
Period size: 477 Copynumber: 5.0 Consensus size: 475
1718340 AGTGATATTG
* * *
1718350 TTGGTGTCGA-AAGAAAAGCTTTTCATTCCACTATTTTTGATAAAATCAAAATTTGTCTCTTAAA
1 TTGGTGTC-ACAAGAAAAGCTTTTCATTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAA
* *
1718414 TACGACAAACATGAATACTCATACTAATCCCCATTCTTTTCCA-GATTATGCACCATAAACATAG
65 TATGACAAACATGAATACTCATACTAATCCCCATTCTTTT-CAGGATTAGGCACCATAAACATAG
* *
1718478 TCTTCCCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAAGCATTTTTCCAACCAAT
129 TCTTCTCATTAGGATACAC-ATATTGATGCTTTGGTTTCGCAAG-AAAGCATTTTTCCCACCAAT
* * * * *
1718543 TTTCGTAAAGTCTAAGTTCATGCCTCAAATGAGATAAACATGGATTCTAGTAGTGATCTT-ATTT
192 TTTTGTAAAGTCTATGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCA-TT
** * * *
1718607 CATTTTGTGAAAAGGCACTGTAAACACATTCTCCTCATTAGGATAACTGATATTGATGATTTTTT
256 CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCT
* * * *
1718672 TTTGCATGGGAATCTTTTCTATGCCCTATTTTCCTTCAAATTAAAGTTCATACCTTAAATAAGAC
321 TTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGAC
* * * * *
1718737 AAGTATCAATTCTCGTAACAATCTCCATTCTTTTCAAAACTCGGAAGCCAAAAACACATTCCCTT
386 AAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGACTAGGAAGCCAAAAACACATTCCCTT
** *
1718802 TTTTAGGA-AACTTGACATTGATGCT
451 CATTAGGATAA-ATGACATTGATGCT
* ** * * * *
1718827 TTTGTGTTGCAAGAAAAGCTTTTCATTCCACCGTTTTTTAT-GAAATTAAAATTTGTCTCTTAAA
1 TTGGTGTCACAAGAAAAGCTTTTCATTCCACTGTTTTTGATAG-AATCAAAGTTTGTCTCTTAAA
* * *
1718891 TACGACAAACATGAATACTCATACTAATCCCCATTCTTTTTACGATTAGGCACCATAAACATAGT
65 TATGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGT
*
1718956 CTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCGTAAGAAAGGCATTTTTCCCACCAATT
130 CTTCTCATTAGGATACAC-ATATTGATGCTTTGGTTTCGCAAGAAA-GCATTTTTCCCACCAATT
* * * * * *
1719021 TTTGTAATGTCTAAGTTCGTTCATGCCTCAAATGAGAGAAACCTGGATTGTAGTAATGATCTTCC
193 TTTGTAAAGTCT-A--T-GTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCA
* *
1719086 TTCATTTTGTGATTAGGCACTATAAACACATTTTCCTCATAAGGATAAATGATATTGATGATTTT
254 TTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTT
* * * *
1719151 CTTTTACATTGAAATCTTTTCATTGCCTTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAG
319 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAG
* * * * ** ***
1719216 ATAAGCATCAATTATCGTAATAGTCTCCATTCTTTTCAAGGTTAGGAAGCTGTAAACACATTCCC
384 ACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGACTAGGAAGCCAAAAACACATTCCC
* ** *
1719281 TTCGTTAGGATACTTGACATTAATGCT
449 TTCATTAGGATAAATGACATTGATGCT
** * * * *
1719308 TTGGTGT-AGCGTGAAAAGCTTTTCATTCCACCGTTTTGGATAGAATCAAAGTTTATCTCTTATA
1 TTGGTGTCA-CAAGAAAAGCTTTTCATTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAA
* *
1719372 TATGACAAACATGAATACTTATACTAATCGCCATGT-TTTTCAGGATTAGGCACCATAAACATAG
65 TATGACAAACATGAATACTCATACTAATCCCCAT-TCTTTTCAGGATTAGGCACCATAAACATAG
* ** ** *
1719436 TCTTCTCATTAGGGTACATCCCATTGATGCTTTGGTTTTACAAGAAAGTATTTTTCCCACCAATT
129 TCTTCTCATTAGGATACA-CATATTGATGCTTTGGTTTCGCAAGAAAGCATTTTTCCCACCAATT
* * * *
1719501 TTTGTGAAGTCTATGTTCGTGCCTCAAACGAGTCAAACATGGATTCTAGAAATGATCTTCATTCA
193 TTTGTAAAGTCTATGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCA
* * * *
1719566 TTTTATGATTAGGCACTATAAACACATTCTCCGCATTAGGATAAATGATATTGACGATTTTCATT
258 TTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTT
*
1719631 TGCATGGAAATCTTTTCTTTGCCCCTATTTTCCTTAAAATCAAAGTTCATACCTTAAATAAGACA
323 TGCATGGAAATCTTTTCTTTG-CCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACA
* * *
1719696 AGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAATATTAGGAAGCCAAAAACACAATCCCTTC
387 AGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGACTAGGAAGCCAAAAACACATTCCCTTC
1719761 ATTAGGATAAATGACATTGATGCT
452 ATTAGGATAAATGACATTGATGCT
* * * *
1719785 TTGGTATCACGAGAAAAGCTTTTCTTTCCACTGTTTTTGATAAAATCAAAGTTTGTCTCTTAAAT
1 TTGGTGTCACAAGAAAAGCTTTTCATTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* * * *
1719850 ATGAAAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACTAGAAACATAGTT
66 ATGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTC
* * *
1719915 TTCCCATTAAGATACACGATATTTATGCTTT--TTT----------C-----T--CACC-ATTTT
131 TTCTCATTAGGATACAC-ATATTGATGCTTTGGTTTCGCAAGAAAGCATTTTTCCCACCAATTTT
* * * *
1719960 TCGTAAAGTCGATGTTCGTGCCTCAAATGAGACAAACATAGATTTTAGTAATGATATTCATTCAT
195 T-GTAAAGTCTATGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCAT
* * ** *
1720025 TTTGTGATTAGGCACTGTAAACGCATTCTCCTCATCCGGTTAAATGATATTGATGATTTTCTTTT
259 TTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTT
* *
1720090 GCATGGAAATTTTTTCTTTG-CC-----TCCTTTAAATCAAAGTTCATACCTTAAATAAGGCAAG
324 GCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAG
* * * *
1720149 CATCGATTCTCATAACAGTCTCCATTCTTTTCAAGGCT-GGATG-----------TTCACTTCAT
389 CATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGACTAGGAAGCCAAAAACACATTCCCTTCAT
* *
1720202 TAGGATACATGACATTGACGCT
454 TAGGATAAATGACATTGATGCT
** * * * * *
1720224 TTGGTGTTTCAAGAAAAGTTTTTCTTTTCACTGTTTTTGATAGAATAAAAGTTCGTCTCTTAAAT
1 TTGGTGTCACAAGAAAAGCTTTTCATTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* *
1720289 ATGACAAACACGAATACTCATACTAATCCCCA-TCTTTTTTAGGATTAGGCACCATAAACATAGT
66 ATGACAAACATGAATACTCATACTAATCCCCATTC-TTTTCAGGATTAGGCACCATAAACATAGT
*
1720353 CTTCTCATTAGGATACATCATATTGATACTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATT
130 CTTCTCATTAGGATACA-CATATTGATGCTTTGGTTTCGCAAGAAA-GCATTTTTCCCACCAATT
* * * *
1720418 TTTGTAAAGTCTAAGTTCGTGCTTCAAATAAGACAAGCATGGATTCTAGTAATGATCTTCATTCA
193 TTTGTAAAGTCTATGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCA
* * * * *
1720483 -TTTGTGATTAGACACTATAAATACATTTTCCTCATTAGTATAAATGATATTGATGATCTTCTTT
258 TTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTT
* * * *
1720547 TGCATGGGAATTTTTTCTTTGCCCTATTTTCTTTTAAATCAAAGTTTATACCTTAAATAAGACAA
323 TGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAA
* * * *
1720612 GCATCGATTCTCGAAATAGTCTCCACTCTTTTCAAGACTGGGAAGCCAAAAACACATTCCCTTCA
388 GCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGACTAGGAAGCCAAAAACACATTCCCTTCA
1720677 TTAGGA-AACATGACATTGATGCT
453 TTAGGATAA-ATGACATTGATGCT
* * *
1720700 TTGCTTTCACTAGAAAAGCTTTT
1 TTGGTGTCACAAGAAAAGCTTTT
1720723 TTCCCACCAA
Statistics
Matches: 1620, Mismatches: 215, Indels: 123
0.83 0.11 0.06
Matches are distributed among these distances:
438 2 0.00
439 165 0.10
440 1 0.00
441 3 0.00
450 4 0.00
451 69 0.04
452 1 0.00
456 2 0.00
457 7 0.00
458 208 0.13
459 60 0.04
460 7 0.00
464 67 0.04
465 4 0.00
475 4 0.00
476 170 0.10
477 435 0.27
478 2 0.00
479 1 0.00
480 27 0.02
481 377 0.23
482 4 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.37
Consensus pattern (475 bp):
TTGGTGTCACAAGAAAAGCTTTTCATTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
ATGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTC
TTCTCATTAGGATACACATATTGATGCTTTGGTTTCGCAAGAAAGCATTTTTCCCACCAATTTTT
GTAAAGTCTATGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTT
TGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGC
ATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCA
TCGATTCTCGTAACAGTCTCCATTCTTTTCAAGACTAGGAAGCCAAAAACACATTCCCTTCATTA
GGATAAATGACATTGATGCT
Found at i:1720934 original size:318 final size:317
Alignment explanation
Indices: 1720357--1721042 Score: 971
Period size: 318 Copynumber: 2.2 Consensus size: 317
1720347 CATAGTCTTC
* * * * *
1720357 TCATTAGGATACATCATATTGATACTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTG
1 TCATTAGGATACATGACATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTTTCCCACCAATTTTTG
* * * *
1720422 TAAAGTCTAAGTTCGTGCTTCAAATAAGACAAGCATGGATTCTAGTAATGATCTTCATTCATTTG
66 TAAAGTCTAACTTCATGCCTCAAATAAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTG
* * * *
1720487 TGATTAGACACTATAAATACATTTTCCTCATTAGTATAAATGATATTGATGATCTTCTTTTGCAT
131 TGATTAGACACTATAAACACATTCTCCTCATTAGGATAAACGATATTGATGATCTTCTTTTGCAT
* * * *
1720552 GGGAATTTTTTCTTTGCCCTATTTTCTTTTAAATCAAAGTTTATACCTTAAATAAGACAAGCATC
196 GGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTTATACCATAAATAAGACAAGCATC
*
1720617 GATTCTCGAAATAGTCTCCACTCTTTTCAAGACTGGGAAGCCAAAAACACATTCCCT
261 GATTCTCGAAACAGTCTCCACTCTTTTCAAGACTGGGAAGCCAAAAACACATTCCCT
* * * *
1720674 TCATTAGGAAACATGACATTGATGCTTTGCTTTCACTAGAAAAGCTTTTTTCCCACCAATTTTTG
1 TCATTAGGATACATGACATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTTTCCCACCAATTTTTG
* *
1720739 TAAAGTCTAACTTCATGCCTCAAATGAGACAAACTTGGATTCTAGTAATGAT-TCTCATTCATTT
66 TAAAGTCTAACTTCATGCCTCAAATAAGACAAACATGGATTCTAGTAATGATCT-TCATTCA-TT
* * *
1720803 TGTGATTAGGCACTATAAACACATTCTCCTTATTAGGATAAACGATATTGATGATTTTCTTTTGC
129 TGTGATTAGACACTATAAACACATTCTCCTCATTAGGATAAACGATATTGATGATCTTCTTTTGC
* * * *
1720868 ATGGAAATCTTTTCTTTTCTCTATTTTCCTTTAAATTAAA-TTTCATACCATAAATAAGAGAAGC
194 ATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTT-ATACCATAAATAAGACAAGC
* * * * *
1720932 ATCGATTCTTGTAACAGTTTGCATTCTTTTCAAGACTGGGAAGCCAAAAACACATTCCCT
258 ATCGATTCTCGAAACAGTCTCCACTCTTTTCAAGACTGGGAAGCCAAAAACACATTCCCT
* * * *
1720992 TCAATAGGGTACATGACATTGATGTTTTGGTGTCGCAAGAAAAGCTTTTTT
1 TCATTAGGATACATGACATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTTT
1721043 TTCCACTGTT
Statistics
Matches: 322, Mismatches: 44, Indels: 5
0.87 0.12 0.01
Matches are distributed among these distances:
316 1 0.00
317 112 0.35
318 209 0.65
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (317 bp):
TCATTAGGATACATGACATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTTTCCCACCAATTTTTG
TAAAGTCTAACTTCATGCCTCAAATAAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTG
TGATTAGACACTATAAACACATTCTCCTCATTAGGATAAACGATATTGATGATCTTCTTTTGCAT
GGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTTATACCATAAATAAGACAAGCATC
GATTCTCGAAACAGTCTCCACTCTTTTCAAGACTGGGAAGCCAAAAACACATTCCCT
Found at i:1721015 original size:160 final size:156
Alignment explanation
Indices: 1720514--1721019 Score: 384
Period size: 159 Copynumber: 3.2 Consensus size: 156
1720504 TACATTTTCC
* * * * * * *
1720514 TCATTAGTATAAATGATATTGATGATCTTCTTTTGCATGGGAATTTTTTCTTTGCCCTATTTTCT
1 TCATTAGGATACATGACATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTCCCCTATTTTC-
* * * * *
1720579 TTTAAATCAAAGTTT-ATACCTTAAATAAGACAAGCATCGATTCTCGAAATAGTCTCCACTCTTT
65 TTTAAATTAAA-TTTCATACC-TAAATAAGACAAGCATCGATTCTAGTAA-AGT-TTCATTCTTT
1720643 TCAAGACTGGGAAGCCAAAAACACATTCCCT
126 TCAAGACTGGGAAGCCAAAAACACATTCCCT
* * * * * * *
1720674 TCATTAGGAAACATGACATTGATGCTTTGC-TTT-CACTAGAAAAGCTTTT-TTCCCACCAATTT
1 TCATTAGGATACATGACATTGATGATTTTCTTTTGCA-T-GGAAATCTTTTCTTTCC-CCTATTT
* * * * * * * *
1720736 T-TGTAAAGTCT-AACTTCATGCCTCAAATGAGACAAACTTGGATTCTAGTAATGATTCTCATTC
63 TCTTTAAA-T-TAAATTTCATACCT-AAATAAGACAAGCATCGATTCTAGTAAAG-TT-TCATTC
** * * * * *
1720799 ATTTT-GTGATTAGGCA-CTATAAACACATTCTCCT
123 -TTTTCAAGACTGGGAAGCCAAAAACACATTC-CCT
* * * * *
1720833 T-ATTAGGATAAACGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTTCTCTATTTTCC
1 TCATTAGGATACATGACATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTCCCCTATTTT-C
* *
1720897 TTTAAATTAAATTTCATACCATAAATAAGAGAAGCATCGATTCTTGTAACAGTTTGCATTCTTTT
65 TTTAAATTAAATTTCATACC-TAAATAAGACAAGCATCGATTCTAGTAA-AGTTT-CATTCTTTT
1720962 CAAGACTGGGAAGCCAAAAACACATTCCCT
127 CAAGACTGGGAAGCCAAAAACACATTCCCT
* *
1720992 TCAATAGGGTACATGACATTGATG-TTTT
1 TCATTAGGATACATGACATTGATGATTTT
1721020 GGTGTCGCAA
Statistics
Matches: 255, Mismatches: 68, Indels: 47
0.69 0.18 0.13
Matches are distributed among these distances:
158 67 0.26
159 109 0.43
160 79 0.31
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (156 bp):
TCATTAGGATACATGACATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTCCCCTATTTTCT
TTAAATTAAATTTCATACCTAAATAAGACAAGCATCGATTCTAGTAAAGTTTCATTCTTTTCAAG
ACTGGGAAGCCAAAAACACATTCCCT
Found at i:1722054 original size:477 final size:475
Alignment explanation
Indices: 1720674--1725081 Score: 5494
Period size: 477 Copynumber: 9.3 Consensus size: 475
1720664 CACATTCCCT
* * * * * * *
1720674 TCATTAGGAAACATGACATTGATGCTTTGCTTTCA-CTAGAAAAGCTTTTTTCCCACCAATTTTT
1 TCATTAGGATACACGATATTGATGCTTTGGTTT-AGCAAGAAAGGCATTTTTCCCACCAATTTTT
* *
1720738 GTAAAGTCTAACTTCATGCCTCAAATGAGACAAACTTGGATTCTAGTAATGAT-TCTCATTCATT
65 GTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCT-TCATTCATT
* * * *
1720802 TTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGATAAACGATATTGATGATTTTCTTTTG
129 TTGTCATTAGGCACTGTAAACACATTCTCCTCATTAGGATAAATGATATTGATGA-TTTCTTTTG
* * * * * * *
1720867 CATGGAAATCTTTTCTTTTCTCTATTTTCCTTTAAATTAAATTTCATACCATAAATAAGAGAAGC
193 CATGGGAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGC
* * * *
1720932 ATCGATTCTTGTAACAGTTTGCATTCTTTTCAAGACTGGGAAGCCAAAAACACATTCCCTTCAAT
258 ATCGATTCTT-AAACAGTCTCCATTCTTTTCAAGACTGGGAAGCCAAAAACACATTCCCTTCATT
** * * *
1720997 AGGGTACATGACATTGATGTTTTGGTGTCGCAAGAAAAGCTTTTTTTTCCA-CTGTTTTTGATAG
322 AGGAAACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCT-TTTTTGATAG
* * * ** *
1721061 AAGCAAAGTTTGTCTCCTAAATACGACAAACATGAATACTCACGCTAATCCTCATCCTTTTCAAG
386 AATCAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCATACTAATCCTCGTCCTTTTCAAG
1721126 ATTAGGCACCATAAACATAGTCTTC
451 ATTAGGCACCATAAACATAGTCTTC
* * *
1721151 TCATTAGGATACACGATATTGAGGTTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTG
1 TCATTAGGATACACGATATTGATGCTTTGGTTTAGCAAGAAAGGCATTTTTCCCACCAATTTTTG
* * * * * *
1721216 TATAGTCTAAGTTCATACCTCAAATAAGACAAACTTCGATTCGAGTAATGATCTTCATTCATTTT
66 TAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTT
* ** * * * *
1721281 GTGATTAGGGTCTATAAACACATTCT--TTATCT-GGATAAATGATATCGATGATTTTTTTTTGC
131 GTCATTAGGCACTGTAAACACATTCTCCTCAT-TAGGATAAATGATATTGATGA-TTTCTTTTGC
** * * * * *
1721343 ATGCAAATCTTTTCTTTGCCCTATTTTCCCTTAAATCAAAGTTCATACCATAAAAAAGGCAAGCG
194 ATGGGAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCA
* * * * * * ** *
1721408 TCGATTCTTGTAATAATCTCCTTTCTTTTCGAGGCTGGGAAGCCAAAAACATGTTCCCTTTATTA
259 TCGATTCTT-AAACAGTCTCCATTCTTTTCAAGACTGGGAAGCCAAAAACACATTCCCTTCATTA
* * * *
1721473 GGATACATGACATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAA
323 GGAAACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCTTTTTTGATAGAA
* * * * **
1721538 TCAAAGTTTGACTCTTAATTGTGACAAACATGAATACTCATACTAATCCTTGTCCTTTTCTGGAT
388 TCAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCATACTAATCCTCGTCCTTTTCAAGAT
*
1721603 TAGGCACCATAAACATAGTTTTC
453 TAGGCACCATAAACATAGTCTTC
* * * * *
1721626 TTATTAGGATACACAATATTGATGCTTTGGTTTAGGAAGAAAGGCATTTTTCCCATCGAA-TTTC
1 TCATTAGGATACACGATATTGATGCTTTGGTTTAGCAAGAAAGGCATTTTTCCCA-CCAATTTTT
* *
1721690 GTACAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCCAGTAATGATCTTCATTCATTT
65 GTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTT
* ** * *
1721755 TGTGATTAGGCACTGTAAACATGTTCTTCTCATTAGGATAAATGATATTGATTATTTCCTTTTGC
130 TGTCATTAGGCACTGTAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTT-CTTTTGC
* **
1721820 ATGGGAATCTTTTCTTTGCCCTATTTTCCTTCAAATTGAAGTTCATACCTTAAATAAGACAAGCA
194 ATGGGAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCA
* * * *
1721885 TCAATTCTTATAACAGTCTCCATTCTTTTCAAGACTGAGAAGCCAAAAACACTTTCCCTTAATTA
259 TCGATTCTTA-AACAGTCTCCATTCTTTTCAAGACTGGGAAGCCAAAAACACATTCCCTTCATTA
* * ** *
1721950 GGATAA-ATGACAATGATGCTTTGGCGTTGCAAGAAAAGCTTTTCTTTTCACCTTTTTTGATAGA
323 GGA-AACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCTTTTTTGATAGA
* * * * * * *
1722014 ATCAAAATTTGTCTCTCAAATGTGACAAACATGTATACTCAGACTAATCC-CTGTTCTTTTCAGG
387 ATCAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCATACTAATCCTC-GTCCTTTTCAAG
*
1722078 ATTAGGCACCATAAACATAGTTTTC
451 ATTAGGCACCATAAACATAGTCTTC
* *
1722103 TCATTAGGATACATC-ATATTGATGCTTTAGTTTCA-CAAGAAAGGCTTTTTTCCCACCAATTTT
1 TCATTAGGATACA-CGATATTGATGCTTTGGTTT-AGCAAGAAAGGCATTTTTCCCACCAATTTT
* * * * *
1722166 TGTAAAGTCTAAGTTCATCCCTCAAATGAGACAAACTTGGATTCTACTAATAATCCTCATTCATT
64 TGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATT
* * *
1722231 TTGTAATTAGGCACTATAAACACATTCTCCTGATTA-G------GATA---AT--TTTCTTTTGC
129 TTGTCATTAGGCACTGTAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTCTTTTGC
**
1722284 ATGAAAATCTTTTCTTTGCCCTATTTTCC-TT---T-AAA--T-A-A---T--AT--GACAAGCA
194 ATGGGAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCA
* ** * * **
1722333 TTGACCCTTGTAACTGTCTCCATTCTTTTCAAGACTGGGAA-CCAAAAACACATTCCCTTCACGA
259 TCGATTCTT-AAACAGTCTCCATTCTTTTCAAGACTGGGAAGCCAAAAACACATTCCCTTCATTA
* * * * *
1722397 GGATAA-ATGACATTGATGCTTTGGTGTCGC-CGAAAAAGTTTTTCTTTCC-CTTATTTTTTATA
323 GGA-AACATGACATTGATGCTTTGGTGTCACAAG-AAAAGCTTTTCTTTCCACCT-TTTTTGATA
* * *
1722459 GAATCAAAGTTTGTC-CTTTAAATATGACAAACATGAATACTCACACTAATCCCCGTTCTTTTCA
385 GAATCAAAGTTTGTCTC-TTAAATATGACAAACATGAATACTCATACTAATCCTCGTCCTTTTCA
*
1722523 AGATTAGGCACCAGAAACATAGTCTTC
449 AGATTAGGCACCATAAACATAGTCTTC
* * *
1722550 TCATTAGGATACATGATATTGATGCTTTGGTTTTGCATGAAAGGCATTTTTCCCACCAATTTTTG
1 TCATTAGGATACACGATATTGATGCTTTGGTTTAGCAAGAAAGGCATTTTTCCCACCAATTTTTG
* * * ** * * *
1722615 TAAAGTCTAAATACGTGCCTCAAACAAGACAAGCATAGATTCTAGTAATGATCTTCATTCTTTTT
66 TAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTT
* *
1722680 GTCATTAGGCACTGTAAACACATTCTCCTTATTATGATAAATGATATTGATGATCTTCTTTTGCA
131 GTCATTAGGCACTGTAAACACATTCTCCTCATTAGGATAAATGATATTGATGAT-TTCTTTTGCA
* *
1722745 TGGGAATTTTTTCTTTGCCCTATTTTCCTTTAAATCAAATTTCATACCTTAAATAAGACAAGCAT
195 TGGGAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCAT
* * *
1722810 CGATTCTCGAAATAGTCTCCACTCTTTTCAAGACTGGGAAGCCAAAAACACATTCCCTTCATTAG
260 CGATTCT-TAAACAGTCTCCATTCTTTTCAAGACTGGGAAGCCAAAAACACATTCCCTTCATTAG
* * * *
1722875 GAAACATGACATTGATGCTTTGGTGCCACAGGAAAAGCTTTTCTTTCCACCGTTTTTAATAGAAT
324 GAAACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCTTTTTTGATAGAAT
* *
1722940 CAAAGTTTGCCTCTTAAATATGACAAACATGAATACTCATACTAATCCTCGTCTTTTTCAAGATT
389 CAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCATACTAATCCTCGTCCTTTTCAAGATT
*
1723005 AAGCACCATAAACATAGTCTTC
454 AGGCACCATAAACATAGTCTTC
* ** * * * *
1723027 TCTTTAGGATACGTGATATTGATGGCTTTGGTTTCGCAAGAATGGCCTTTTTCTCACCAATTTTT
1 TCATTAGGATACACGATATTGAT-GCTTTGGTTTAGCAAGAAAGGCATTTTTCCCACCAATTTTT
** * * * * * *
1723092 GTATTGTCCAAGTTCGTGCCTCGAATGAGACAAACATGGATTCCAGTAATGATCTTCGTTCTTTT
65 GTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTT
* *
1723157 TGTCATTAGGCACTGTAAACACATTCTCCTCATTAGGATAAATGATATTGATGATCTTTTTTTGT
130 TGTCATTAGGCACTGTAAACACATTCTCCTCATTAGGATAAATGATATTGATGAT-TTCTTTTGC
* * * *
1723222 ATGGGAATTTTTTCTTTGCCCTATTTTGCTTTAAATCAAAGTTTAAACCTTAAATAAGACAAGCA
194 ATGGGAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCA
* * *
1723287 TCGATTCTAAAAATAGTCTCCATTCTTTTCAAGACTGGGAAGCCAAAAACACATTCCCTTTATTA
259 TCGATTCT-TAAACAGTCTCCATTCTTTTCAAGACTGGGAAGCCAAAAACACATTCCCTTCATTA
* * *
1723352 GGAAACCTAACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCA-TTGTTTTTGATAGA
323 GGAAACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCT-TTTTTGATAGA
* * *
1723416 ATC-AATTTTGCCTCTTAAATATGACAAACATGAATACTCATACTAATCCTCATCCTTTTCAAGA
387 ATCAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCATACTAATCCTCGTCCTTTTCAAGA
*
1723480 TTAAGCACCATAAACATAGTCTTC
452 TTAGGCACCATAAACATAGTCTTC
* * * * * * *
1723504 TCTTTAGGATACACGATATTGACGGCTTTGGTTTCGTAAGAATGGCCTTTTTCTCACCAATTTTT
1 TCATTAGGATACACGATATTGA-TGCTTTGGTTTAGCAAGAAAGGCATTTTTCCCACCAATTTTT
* * * *
1723569 GTAATGTCCAAGTTCATGCTTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTT
65 GTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTT
* *
1723634 TGTCATTAGGCACTGTAAACACATTCTCCTCATTAGGATAAATGATATTGATGATATTTTTTTGT
130 TGTCATTAGGCACTGTAAACACATTCTCCTCATTAGGATAAATGATATTGATGAT-TTCTTTTGC
* * *
1723699 ATGAGAATTTTTTCTTTGCCCTATTTTCCATTAAATCAAAGTTCATACCTTAAATAAGACAAGCA
194 ATGGGAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCA
* *
1723764 TCGATTCTCGAAACAGTCTCCATTCTTTTCAAGACTGGGAAGCCAAAAACACATTCCCTTTATTA
259 TCGATTCT-TAAACAGTCTCCATTCTTTTCAAGACTGGGAAGCCAAAAACACATTCCCTTCATTA
* * *
1723829 GGAAACCTGACATTGATGCTTTGGTATCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATTA-A
323 GGAAACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCTTTTTTGA-TAGA
* * * * * **
1723893 ATCAAAGTTTGTTTCTTAAAAACGACGAACATGAATACTTATACTAATCCTTATCCTTTTCAAGA
387 ATCAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCATACTAATCCTCGTCCTTTTCAAGA
* *
1723958 TTATGCCCCATAAACATAGTCTTC
452 TTAGGCACCATAAACATAGTCTTC
*** * * *
1723982 TCATTAGGATAGTTGATATTGATGCTTTGGTTTCGCAAGAAAGGCATTTTTCTCACCAATTTTTA
1 TCATTAGGATACACGATATTGATGCTTTGGTTTAGCAAGAAAGGCATTTTTCCCACCAATTTTTG
* * * *
1724047 TAAAGTCCAAGTTCGTGCCTCGAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTT
66 TAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTC-ATTT
* * *
1724112 TGTCATTAGGCACTGTAAACACATTCCCCTCATTATGATAAATGATATTGATGAACTTCTTTTGC
130 TGTCATTAGGCACTGTAAACACATTCTCCTCATTAGGATAAATGATATTGATG-ATTTCTTTTGC
**
1724177 ATAAGAAT-TTTT-TTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCA
194 ATGGGAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCA
* * * *
1724240 TCGATTCTTGAAACAGTTTCAATTCTTTTCAAGACTAGGAAGCCAAAAACACATTTCCTTCATTA
259 TCGATTCTT-AAACAGTCTCCATTCTTTTCAAGACTGGGAAGCCAAAAACACATTCCCTTCATTA
* * *
1724305 GGAAACATGACATTGATGTTTTGGTGTCATAAGAAAAGCTTTT-TTTCCCACCATTTTTGATAGA
323 GGAAACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTT-CCACCTTTTTTGATAGA
* * *
1724369 ATCAAAGTTTATCTCTTAAATATGATAAACATGAATACTCATACTAATCCTTGTCCTTTTCAAGA
387 ATCAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCATACTAATCCTCGTCCTTTTCAAGA
*
1724434 TTAAGCACCATAAACATAGTCTTC
452 TTAGGCACCATAAACATAGTCTTC
* *
1724458 TCA-T----TACACGATATTTATGCTTTGGTTTCA-CAAGAAAGGCATTTTTCTCACCAATTTTT
1 TCATTAGGATACACGATATTGATGCTTTGGTTT-AGCAAGAAAGGCATTTTTCCCACCAATTTTT
* * * *
1724517 GTAAAGTCCAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTGGTAATGATCTTCATTCTTTT
65 GTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTT
*
1724582 TGTCATTAGGCACTGT-AACACATTCTCCTCATTAAGATAAATGATATTGATGATCTTCTTTTGC
130 TGTCATTAGGCACTGTAAACACATTCTCCTCATTAGGATAAATGATATTGATGAT-TTCTTTTGC
* *
1724646 ATGGGAATTTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACGAGCA
194 ATGGGAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCA
* * * * *
1724711 TCGATTCTCGAAATAGTCTCCATTCTTTTCAAAACTAGGAAGCCACAAACACATTCCCTTCATTA
259 TCGATTCT-TAAACAGTCTCCATTCTTTTCAAGACTGGGAAGCCAAAAACACATTCCCTTCATTA
* * * *
1724776 GGAAACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTATTCTTTCCACCGTTTTCGATAAAA
323 GGAAACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCTTTTTTGATAGAA
* * * *
1724841 TCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATACTAATCCTCATCTTTTTAAAGAT
388 TCAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCATACTAATCCTCGTCCTTTTCAAGAT
1724906 TAGGCACCATAAACATAGTCTTC
453 TAGGCACCATAAACATAGTCTTC
* ** * * *
1724929 TCATTAGGATACACGATATTAATTTTTTGATTTCA-CAAGAAAGGCATTTTTCCCACCAAATTTC
1 TCATTAGGATACACGATATTGATGCTTTGGTTT-AGCAAGAAAGGCATTTTTCCCACCAATTTTT
* * * * *
1724993 GTAAAGTCTAAGTCCGTGCCTCAAATGAGGCAAACATGGATTTTAGTAATGATCTTCATTTATTT
65 GTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTT
* * *
1725058 TGTGATTAAGCACTATAAACACAT
130 TGTCATTAGGCACTGTAAACACAT
1725082 CTTTTCTTTG
Statistics
Matches: 3465, Mismatches: 386, Indels: 160
0.86 0.10 0.04
Matches are distributed among these distances:
446 4 0.00
447 288 0.08
448 43 0.01
450 2 0.00
452 1 0.00
454 4 0.00
455 1 0.00
456 1 0.00
457 3 0.00
459 3 0.00
460 36 0.01
461 2 0.00
463 1 0.00
464 35 0.01
465 6 0.00
467 3 0.00
468 2 0.00
469 50 0.01
470 28 0.01
471 352 0.10
472 5 0.00
474 2 0.00
475 411 0.12
476 417 0.12
477 1262 0.36
478 502 0.14
479 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (475 bp):
TCATTAGGATACACGATATTGATGCTTTGGTTTAGCAAGAAAGGCATTTTTCCCACCAATTTTTG
TAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTT
GTCATTAGGCACTGTAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTCTTTTGCAT
GGGAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATC
GATTCTTAAACAGTCTCCATTCTTTTCAAGACTGGGAAGCCAAAAACACATTCCCTTCATTAGGA
AACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCTTTTTTGATAGAATCA
AAGTTTGTCTCTTAAATATGACAAACATGAATACTCATACTAATCCTCGTCCTTTTCAAGATTAG
GCACCATAAACATAGTCTTC
Found at i:1727853 original size:15 final size:15
Alignment explanation
Indices: 1727828--1727865 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
1727818 AAATGAATCA
1727828 AAATTTGTTGAAAATG
1 AAATTTGTTGAAAA-G
1727844 AAATTT-TTGAAAAG
1 AAATTTGTTGAAAAG
*
1727858 AAAATTGT
1 AAATTTGT
1727866 CGAACAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
14 6 0.30
15 8 0.40
16 6 0.30
ACGTcount: A:0.47, C:0.00, G:0.16, T:0.37
Consensus pattern (15 bp):
AAATTTGTTGAAAAG
Found at i:1735544 original size:12 final size:12
Alignment explanation
Indices: 1735527--1735631 Score: 55
Period size: 12 Copynumber: 8.8 Consensus size: 12
1735517 AGAAAGAAGA
1735527 GATAGGAGGGAT
1 GATAGGAGGGAT
*
1735539 GATAGGA-GGACA
1 GATAGGAGGGA-T
1735551 GATAGGAGAGGTAGT
1 GATAGGAG-GG-A-T
1735566 AGAGATAGGAGGGAT
1 ---GATAGGAGGGAT
1735581 GATAGGAGGAGA-
1 GATAGGAGG-GAT
*
1735593 GATAGGAGAGAT
1 GATAGGAGGGAT
*
1735605 AATA-GA--GA-
1 GATAGGAGGGAT
1735613 G--AGGAGGGAT
1 GATAGGAGGGAT
1735623 GATAGGAGG
1 GATAGGAGG
1735632 AGGAGAGAAA
Statistics
Matches: 72, Mismatches: 6, Indels: 30
0.67 0.06 0.28
Matches are distributed among these distances:
6 1 0.01
7 2 0.03
9 4 0.06
10 1 0.01
11 7 0.10
12 40 0.56
13 2 0.03
14 2 0.03
15 2 0.03
16 1 0.01
17 2 0.03
18 8 0.11
ACGTcount: A:0.39, C:0.01, G:0.47, T:0.13
Consensus pattern (12 bp):
GATAGGAGGGAT
Found at i:1735617 original size:18 final size:18
Alignment explanation
Indices: 1735590--1735639 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
1735580 TGATAGGAGG
*
1735590 AGAGATAGGAGAGATAAT
1 AGAGAGAGGAGAGATAAT
* *
1735608 AGAGAGAGGAGGGATGAT
1 AGAGAGAGGAGAGATAAT
1735626 AG-GAGGAGGAGAGA
1 AGAGA-GAGGAGAGA
1735640 AAAAGATGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
17 2 0.07
18 25 0.93
ACGTcount: A:0.44, C:0.00, G:0.46, T:0.10
Consensus pattern (18 bp):
AGAGAGAGGAGAGATAAT
Found at i:1735633 original size:42 final size:42
Alignment explanation
Indices: 1735524--1735633 Score: 184
Period size: 42 Copynumber: 2.6 Consensus size: 42
1735514 AAGAGAAAGA
* * *
1735524 AGAGATAGGAGGGATGATAGGAGGACAGATAGGAGAGGTAGT
1 AGAGATAGGAGGGATGATAGGAGGAGAGATAGGAGAGATAAT
1735566 AGAGATAGGAGGGATGATAGGAGGAGAGATAGGAGAGATAAT
1 AGAGATAGGAGGGATGATAGGAGGAGAGATAGGAGAGATAAT
*
1735608 AGAGAGAGGAGGGATGATAGGAGGAG
1 AGAGATAGGAGGGATGATAGGAGGAG
1735634 GAGAGAAAAA
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 64 1.00
ACGTcount: A:0.40, C:0.01, G:0.46, T:0.13
Consensus pattern (42 bp):
AGAGATAGGAGGGATGATAGGAGGAGAGATAGGAGAGATAAT
Found at i:1740035 original size:12 final size:11
Alignment explanation
Indices: 1740013--1740088 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
1740003 AGAGAAAGAA
*
1740013 GAGAGAGGAGG
1 GAGATAGGAGG
1740024 GATGATAGGAGG
1 GA-GATAGGAGG
*
1740036 AGAGACAGGA--
1 -GAGATAGGAGG
*
1740046 GAGATAGTA--
1 GAGATAGGAGG
1740055 GAGATAGGAGG
1 GAGATAGGAGG
1740066 GATGATAGGAGG
1 GA-GATAGGAGG
*
1740078 AGAGACAGGAG
1 -GAGATAGGAG
1740089 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:1740064 original size:42 final size:42
Alignment explanation
Indices: 1740003--1740121 Score: 202
Period size: 42 Copynumber: 2.8 Consensus size: 42
1739993 TAGCCCTCAA
* *
1740003 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
1740045 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
1740087 AGAGATAATAGAGAGAGGAGGGATGATAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
1740122 GAGAGAAGAA
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 72 1.00
ACGTcount: A:0.43, C:0.02, G:0.46, T:0.09
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:1740105 original size:18 final size:18
Alignment explanation
Indices: 1740078--1740127 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
1740068 TGATAGGAGG
*
1740078 AGAGACAGGAGAGATAAT
1 AGAGAGAGGAGAGATAAT
* *
1740096 AGAGAGAGGAGGGATGAT
1 AGAGAGAGGAGAGATAAT
1740114 AG-GAGGAGGAGAGA
1 AGAGA-GAGGAGAGA
1740128 AGAAGATGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
17 2 0.07
18 25 0.93
ACGTcount: A:0.44, C:0.02, G:0.46, T:0.08
Consensus pattern (18 bp):
AGAGAGAGGAGAGATAAT
Found at i:1750520 original size:12 final size:11
Alignment explanation
Indices: 1750501--1750576 Score: 70
Period size: 12 Copynumber: 6.9 Consensus size: 11
1750491 AGAGAAAGAA
1750501 GAGATAGGAGG
1 GAGATAGGAGG
1750512 GATGATAGGAGGG
1 GA-GATAGGA-GG
*
1750525 GGGATAGGA--
1 GAGATAGGAGG
*
1750534 GAGATAGTA--
1 GAGATAGGAGG
1750543 GAGATAGGAGG
1 GAGATAGGAGG
1750554 GATGATAGGAGG
1 GA-GATAGGAGG
1750566 AGAGATAGGAG
1 -GAGATAGGAG
1750577 AGATAATAGA
Statistics
Matches: 55, Mismatches: 4, Indels: 11
0.79 0.06 0.16
Matches are distributed among these distances:
9 15 0.27
11 4 0.07
12 31 0.56
13 5 0.09
ACGTcount: A:0.37, C:0.00, G:0.50, T:0.13
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:1750545 original size:9 final size:9
Alignment explanation
Indices: 1750527--1750581 Score: 53
Period size: 9 Copynumber: 6.4 Consensus size: 9
1750517 TAGGAGGGGG
1750527 GATAGGAGA
1 GATAGGAGA
*
1750536 GATAGTAGA
1 GATAGGAGA
*
1750545 GATAGGAGG
1 GATAGGAGA
*
1750554 GAT--GATA
1 GATAGGAGA
*
1750561 G-GAGGAGA
1 GATAGGAGA
1750569 GATAGGAGA
1 GATAGGAGA
1750578 GATA
1 GATA
1750582 ATAGAGAGAG
Statistics
Matches: 35, Mismatches: 8, Indels: 6
0.71 0.16 0.12
Matches are distributed among these distances:
7 3 0.09
8 4 0.11
9 28 0.80
ACGTcount: A:0.42, C:0.00, G:0.44, T:0.15
Consensus pattern (9 bp):
GATAGGAGA
Found at i:1750550 original size:42 final size:42
Alignment explanation
Indices: 1750491--1750613 Score: 174
Period size: 42 Copynumber: 2.9 Consensus size: 42
1750481 CAGCCCACAA
* * * *
1750491 AGAGAAAGAAGAGATAGGAGGGATGATAGGAGGGGGGATAGG
1 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGATAGG
1750533 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGATAGG
1 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGATAGG
* * *
1750575 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAAGAGA
1 AGAGATAGTAGAGATAGGAGGGATGATAGGAGG-AGAGA
1750614 GAAGAAGATG
Statistics
Matches: 73, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
42 68 0.93
43 5 0.07
ACGTcount: A:0.42, C:0.01, G:0.46, T:0.11
Consensus pattern (42 bp):
AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGATAGG
Found at i:1750585 original size:12 final size:12
Alignment explanation
Indices: 1750545--1750590 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
1750535 AGATAGTAGA
*
1750545 GATAGGAGGGAT
1 GATAGGAGAGAT
1750557 GATAGGAGGAGA-
1 GATAGGA-GAGAT
1750569 GATAGGAGAGAT
1 GATAGGAGAGAT
*
1750581 AATA-GAGAGA
1 GATAGGAGAGA
1750591 GGAGGGATGA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
11 10 0.33
12 17 0.57
13 3 0.10
ACGTcount: A:0.43, C:0.00, G:0.43, T:0.13
Consensus pattern (12 bp):
GATAGGAGAGAT
Found at i:1757208 original size:477 final size:476
Alignment explanation
Indices: 1755893--1757367 Score: 1969
Period size: 476 Copynumber: 3.1 Consensus size: 476
1755883 TCTCAATAGT
* * *
1755893 CATGAATACTCCTACTAATCCTCATCCTTTTCAGAATTAGGCACCATAAACATAGTCTTCTCATT
1 CATGAATACTCATACTAATCCTCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATT
* * * * * * *
1755958 AGGATACACGATATTGATGCTTTGGTTTTGCAAGAAAGTCATTTTTTCCGCCAAATTTCGTAAAG
66 AGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAG
* * * * * *
1756023 CCAAAGTTCGTGCCTCAAATAAGACAAACATTGATTCTAGTAATGATCTTCAATCATTTTGTGAT
131 TCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
* * * *
1756088 TAGGCACTGTAAACACATTCTCCTTATAAGGATAAATGATATTAATGATCTTCTTTTGCATGAGA
196 TAGGCACTATAAACACATTCTCCTCATAAGGATAAATGATATTGATGATTTTCTTTTGCATG-GA
* * * *
1756153 ATCTTTTCATTGGCCTATTTTCCTTCAAATCAAAGTTCATACCTTAAATAAAACAAGCATCGATT
260 ATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATT
* * * *
1756218 CTCGTAACAGTCTCCATTCTTATCAAGACTAGGAAGCCCAAAACACATTCCTTTCATTAGGATAA
325 CTCGTAACAGTCTCCATTCTTTTCAAGACTAGGAAGCCAAAAACACATTCCCTTCATTAGGATAC
* * **
1756283 ATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTTCACTATTTTTGATAGAATCAAAG
390 ATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAG
* *
1756348 TTTATCTCTTAAATACGACAAA
455 TTTGTGTCTTAAATACGACAAA
* ** * * *
1756370 CATGTATAAGCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTTATT
1 CATGAATACTCATACTAATCCTCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATT
* * *
1756435 AGGATACATCATATTGATGCTTTGGGTTCGCAAGAAAAGCA-TTTTCCCACCAATTTTTG-AATA
66 AGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAA-A
* *
1756498 GTCTAAGTTTATGCCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATAT-ATTTTGTG
130 GTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCAT-TCATTTTGTG
* * * * * * *
1756562 ACTAGGTACTATAAATACATTCTCCTCATTAGGACAAATGATATTGCTGATTTTTTTTTGCATGC
194 ATTAGGCACTATAAACACATTCTCCTCATAAGGATAAATGATATTGATGATTTTCTTTTGCATG-
* * * *
1756627 AAATCCTTTCTTTGCCCTATTTTCCCTTAAAAT-AAAGTTCATACCTTAAATAAGGCAAGCATCG
258 GAATCTTTTCTTTGCCCTATTTT-CCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCG
* * * *
1756691 ATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAAACACATTCCCTTCATTACGA
322 ATTCTCGTAACAGTCTCCATTCTTTTCAAGACTAGGAAGCCAAAAACACATTCCCTTCATTAGGA
* * * *
1756756 TACATGACATTGATACTTTGGTGTTGCAAGAAAAGCTTTTCCTTCCATCGTTTTTGATAGAATCA
387 TACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCA
*
1756821 AAGTTTGTGTCTTAAATATGACAAA
452 AAGTTTGTGTCTTAAATACGACAAA
* * *
1756846 CATGAATACTTATACTAATCC-CTATTCTTTTCAGGATTAAGCACCATAAACATAGTCTTGTCAT
1 CATGAATACTCATACTAATCCTC-ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAT
* * * *
1756910 TAGGATACATGATATTGATTCTTTAGTTTTGCAAGAAAGGTATTTTTCCCACCAATTTTTGTAAA
65 TAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAA
* * * *
1756975 CTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTCTGTAA
130 GTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGA
* * **
1757040 TTAGGCACTGTAAACACATTCTCCTCATTAGGA-AGAATGATATTGATGACCTTCTTTTGCATGA
195 TTAGGCACTATAAACACATTCTCCTCATAAGGATA-AATGATATTGATGATTTTCTTTTGCATG-
* * * *
1757104 GAATTTTTTCTTTGCCATAATTTCCTTTAAATCCAAGTTCATACCTTAAATAAGACAAGCATCGA
258 GAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGA
* *
1757169 TTCTCATAACAGTCTCCATTCTTTTCAAGACTAGGAAGCCAAAAACACATTCCCTTCATTAAGAT
323 TTCTCGTAACAGTCTCCATTCTTTTCAAGACTAGGAAGCCAAAAACACATTCCCTTCATTAGGAT
** * *
1757234 ACATGACATTGATGCTTTCATGT-G--AGAAAAGCTTTTCTTTCCACTGTTTTTGATAAAATCAA
388 ACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAA
** *
1757296 AGTTTGCCTCTTAAATATGACAAA
453 AGTTTGTGTCTTAAATACGACAAA
*
1757320 CATCAATACTCATACTAATCCTCATTCTTTTCAGGATTAGGCACCATA
1 CATGAATACTCATACTAATCCTCATTCTTTTCAGGATTAGGCACCATA
1757368 TTGATGCTTT
Statistics
Matches: 870, Mismatches: 118, Indels: 23
0.86 0.12 0.02
Matches are distributed among these distances:
474 99 0.11
475 4 0.00
476 408 0.47
477 357 0.41
478 2 0.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (476 bp):
CATGAATACTCATACTAATCCTCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATT
AGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAG
TCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
TAGGCACTATAAACACATTCTCCTCATAAGGATAAATGATATTGATGATTTTCTTTTGCATGGAA
TCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTC
TCGTAACAGTCTCCATTCTTTTCAAGACTAGGAAGCCAAAAACACATTCCCTTCATTAGGATACA
TGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGT
TTGTGTCTTAAATACGACAAA
Done.