Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold39
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4724573
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 178835 characters in sequence are not A, C, G, or T
File 19 of 27
Found at i:3242204 original size:22 final size:22
Alignment explanation
Indices: 3242144--3242204 Score: 54
Period size: 22 Copynumber: 2.7 Consensus size: 22
3242134 AGTGAAAAGG
*
3242144 GGTTTTTCCCTTCTTTTTTTTTTT
1 GGTTTTT--CTTCTTTTCTTTTTT
*
3242168 GGTTTTTCTTTTTTTCCTTTTTT
1 GGTTTTTCTTCTTTT-CTTTTTT
3242191 -GTTTTGT-TTCTTTT
1 GGTTTT-TCTTCTTTT
3242205 TTTGGAAAAG
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
22 18 0.56
23 7 0.22
24 7 0.22
ACGTcount: A:0.00, C:0.13, G:0.10, T:0.77
Consensus pattern (22 bp):
GGTTTTTCTTCTTTTCTTTTTT
Found at i:3242208 original size:17 final size:16
Alignment explanation
Indices: 3242170--3242208 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
3242160 TTTTTTTTGG
*
3242170 TTTTTCTTTTTTTCCT
1 TTTTTGTTTTTTTCCT
*
3242186 TTTTTGTTTTGTTTCTT
1 TTTTTGTTTT-TTTCCT
3242203 TTTTTG
1 TTTTTG
3242209 GAAAAGAACA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 9 0.45
17 11 0.55
ACGTcount: A:0.00, C:0.10, G:0.08, T:0.82
Consensus pattern (16 bp):
TTTTTGTTTTTTTCCT
Found at i:3242462 original size:11 final size:11
Alignment explanation
Indices: 3242446--3242497 Score: 77
Period size: 11 Copynumber: 4.7 Consensus size: 11
3242436 CCTTTGCACC
*
3242446 TTTTTTCTGTG
1 TTTTTTTTGTG
*
3242457 TTTTTTTTGTT
1 TTTTTTTTGTG
*
3242468 TTTTTTTTGTT
1 TTTTTTTTGTG
3242479 TTTTTTTTGTG
1 TTTTTTTTGTG
3242490 TTTTTTTT
1 TTTTTTTT
3242498 TTCATCACTT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
11 38 1.00
ACGTcount: A:0.00, C:0.02, G:0.12, T:0.87
Consensus pattern (11 bp):
TTTTTTTTGTG
Found at i:3242471 original size:20 final size:20
Alignment explanation
Indices: 3242446--3242484 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
3242436 CCTTTGCACC
3242446 TTTTTTCTGTGTTTTTTTTG
1 TTTTTTCTGTGTTTTTTTTG
* *
3242466 TTTTTTTTTTGTTTTTTTT
1 TTTTTTCTGTGTTTTTTTT
3242485 TTGTGTTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.00, C:0.03, G:0.10, T:0.87
Consensus pattern (20 bp):
TTTTTTCTGTGTTTTTTTTG
Found at i:3242498 original size:13 final size:12
Alignment explanation
Indices: 3242457--3242499 Score: 70
Period size: 13 Copynumber: 3.6 Consensus size: 12
3242447 TTTTTCTGTG
3242457 TTTTTTTTG-TT
1 TTTTTTTTGTTT
3242468 TTTTTTTTGTTT
1 TTTTTTTTGTTT
3242480 TTTTTTTGTGTTT
1 TTTTTTT-TGTTT
3242493 TTTTTTT
1 TTTTTTT
3242500 CATCACTTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
11 9 0.30
12 9 0.30
13 12 0.40
ACGTcount: A:0.00, C:0.00, G:0.09, T:0.91
Consensus pattern (12 bp):
TTTTTTTTGTTT
Found at i:3242512 original size:1 final size:1
Alignment explanation
Indices: 3242457--3242499 Score: 50
Period size: 1 Copynumber: 43.0 Consensus size: 1
3242447 TTTTTCTGTG
* * * *
3242457 TTTTTTTTGTTTTTTTTTTGTTTTTTTTTTGTGTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
3242500 CATCACTTTT
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
1 34 1.00
ACGTcount: A:0.00, C:0.00, G:0.09, T:0.91
Consensus pattern (1 bp):
T
Found at i:3245404 original size:52 final size:52
Alignment explanation
Indices: 3245335--3245456 Score: 192
Period size: 52 Copynumber: 2.3 Consensus size: 52
3245325 AAATAACGAG
* *
3245335 GTTGGAGTATCCTCGATT-ATGAAAAATTGGTGTTTTCGAAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTAAAGAAAAATTGGTGTTTT-GAAAATAAAATCGGA
*
3245387 GTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTTGAAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTAAAGAAAAATTGGTGTTTTGAAAATAAAATCGGA
*
3245439 GTTGGAATATCCCCGATT
1 GTTGGAGTATCCCCGATT
3245457 GTGGAGAATT
Statistics
Matches: 65, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
52 49 0.75
53 16 0.25
ACGTcount: A:0.34, C:0.11, G:0.24, T:0.31
Consensus pattern (52 bp):
GTTGGAGTATCCCCGATTAAAGAAAAATTGGTGTTTTGAAAATAAAATCGGA
Found at i:3247840 original size:13 final size:13
Alignment explanation
Indices: 3247822--3247847 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3247812 ACAATGATCC
3247822 ATGTATCGATACA
1 ATGTATCGATACA
3247835 ATGTATCGATACA
1 ATGTATCGATACA
3247848 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3247911 original size:19 final size:19
Alignment explanation
Indices: 3247887--3247941 Score: 92
Period size: 19 Copynumber: 2.9 Consensus size: 19
3247877 CAATAGCTAA
*
3247887 TTATGTATCGATACAATAC
1 TTATGTATCGATACAAAAC
3247906 TTATGTATCGATACAAAAC
1 TTATGTATCGATACAAAAC
*
3247925 TTATGTATCAATACAAA
1 TTATGTATCGATACAAA
3247942 TTGTTGAATT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 34 1.00
ACGTcount: A:0.42, C:0.15, G:0.09, T:0.35
Consensus pattern (19 bp):
TTATGTATCGATACAAAAC
Found at i:3248020 original size:21 final size:21
Alignment explanation
Indices: 3247996--3248053 Score: 98
Period size: 21 Copynumber: 2.8 Consensus size: 21
3247986 ACATTTGTAG
*
3247996 AATGTATTGATACATTCCACA
1 AATGTATCGATACATTCCACA
*
3248017 AATGTATCGATACATTCTACA
1 AATGTATCGATACATTCCACA
3248038 AATGTATCGATACATT
1 AATGTATCGATACATT
3248054 TGAAATTGTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.34
Consensus pattern (21 bp):
AATGTATCGATACATTCCACA
Found at i:3248797 original size:119 final size:116
Alignment explanation
Indices: 3248589--3248800 Score: 270
Period size: 119 Copynumber: 1.8 Consensus size: 116
3248579 GGGTGTCCAC
* *
3248589 TTTTCAAGGACAAAGGAAAAGAGAATGAAATAGGTCTTGCTCTTTGAAGACCAAAGAAGAGAAGA
1 TTTTCAAGGACAAAGGAAAAGAGAACGAAATAGGTCTTGCTCTCTGAAGACCAAAGAAGAGAAGA
3248654 AAAGGAAAGTGTCCTGCTTCTTGAGGACAAAGTGGAAAAGAGTACGTCCCA
66 AAAGGAAAGTGTCCTGCTTCTTGAGGACAAAGTGGAAAAGAGTACGTCCCA
* * *
3248705 TTTTCCAAGGACAAAGGAAAAAGGGAAACGAAATATGTCCTTGCTCTCTGAGGA-CAAAGAA-AG
1 TTTT-CAAGGACAAAGG-AAAAGAG-AACGAAATAGGT-CTTGCTCTCTGAAGACCAAAGAAGAG
* *
3248768 AGGAAAA-TAAAGTGTATCCTGC-TCATTGAGGAC
62 AAGAAAAGGAAAGTG--TCCTGCTTC-TTGAGGAC
3248801 TAAAAAGTGC
Statistics
Matches: 82, Mismatches: 7, Indels: 11
0.82 0.07 0.11
Matches are distributed among these distances:
116 4 0.05
117 18 0.22
118 16 0.20
119 31 0.38
120 13 0.16
ACGTcount: A:0.40, C:0.15, G:0.25, T:0.20
Consensus pattern (116 bp):
TTTTCAAGGACAAAGGAAAAGAGAACGAAATAGGTCTTGCTCTCTGAAGACCAAAGAAGAGAAGA
AAAGGAAAGTGTCCTGCTTCTTGAGGACAAAGTGGAAAAGAGTACGTCCCA
Found at i:3248900 original size:55 final size:55
Alignment explanation
Indices: 3248784--3249813 Score: 1012
Period size: 55 Copynumber: 17.9 Consensus size: 55
3248774 ATAAAGTGTA
* * *
3248784 TCCTGCTCATTGAGGACTAAAAAGTGCCACCAAC-T-CGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
*
3248837 TCCTGCTCTTTGAGGACT-AAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACTGAAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
*
3248892 TCCTGCTCTTTGAGGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * *
3248947 TCCTGCTCTTTGGGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GCG
* *
3249008 TCCTACTCTTTGAGGACTAGAAAA-TGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GCG
**
3249069 TCCTGCTCTTTGAGGACTAGAAAA-TGCCACCAACTTGTGTGGGCTTTGAAAGGTA
1 TCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
3249124 TCCTGCTCTTTGAGGATTGGAAAA-TGCCACCAACTTGTGTGGGCTTTGAAAGGCA
1 TCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
3249179 TCCTGCTCCTTGAGGATTGGAAAA-TGCCACCAACTTGTGTGGGCTTTGAAAGAAGAAGGCG
1 TCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTT----G-A-AAGGCG
* * *
3249240 TCCTGCTCTTTGAGGACT-AAAGGTGCCACTAACTTGTGTGGGCTTTAAAAGAAAAAGCG
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT----G-AAAGGCG
* *
3249299 TCCTGCTCTTTGGGGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GCG
*
3249360 TCCTGCTCTTTGAGGATTGGAAAA-TGCCACCAACTTGTGTGGGCTTTGAAAGAAGAAGGCG
1 TCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTT----G-A-AAGGCG
**
3249421 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTT-AAGAGGCG
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAA-AGGCG
*
3249476 TCCTGCTCTTTGAGGACT-AGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCG
1 TCCTGCTCTTTGAGGACTGA-AAAGTGCCACCAACTTGTGTGGGCTTT-----GA-AAGGCG
** * *
3249537 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCA
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * * *
3249592 TCCTACTCTTTGAGGA-TTAGGAAGTGCCACCAACTTGTGTGAGCTTTAAAAGGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGA-AAAGTGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCG
** *
3249653 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
*
3249708 TCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCG
* * *
3249768 TCCTACTTTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTTT
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT
3249814 AAAAAGAAAA
Statistics
Matches: 865, Mismatches: 55, Indels: 107
0.84 0.05 0.10
Matches are distributed among these distances:
52 4 0.00
53 28 0.03
54 33 0.04
55 327 0.38
56 10 0.01
57 4 0.00
59 26 0.03
60 109 0.13
61 311 0.36
62 7 0.01
65 3 0.00
66 3 0.00
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
Found at i:3249048 original size:61 final size:60
Alignment explanation
Indices: 3248784--3249846 Score: 1167
Period size: 61 Copynumber: 18.3 Consensus size: 60
3248774 ATAAAGTGTA
* * *
3248784 TCCTGCTCATTGAGGACTAAAAAGTGCCACCAAC-T-CGTGGGCTTT----G-AAAGGCG
1 TCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
*
3248837 TCCTGCTCTTTGAGGACTA-AAAGGTGCCACCAACTTGTGTGGGCTTT----G-AAAGGTG
1 TCCTGCTCTTTGAGGACTAGAAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* * *
3248892 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT----G-AAAGGTG
1 TCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* * * *
3248947 TCCTGCTCTTTGGGGACT-GAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTAG-AAAGTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGCG
* * * *
3249008 TCCTACTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGCG
* **
3249069 TCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTT----G-AAAGGTA
1 TCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* * * *
3249124 TCCTGCTCTTTGAGGATTGGAAAATGCCACCAACTTGTGTGGGCTTT----G-AAAGGCA
1 TCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* * * * *
3249179 TCCTGCTCCTTGAGGATTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGAAGAAGGCG
1 TCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAA-AAGGCG
* * *
3249240 TCCTGCTCTTTGAGGACTA-AAGGTGCCACTAACTTGTGTGGGCTTTAAAAGAAAAAGCG
1 TCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* * * * *
3249299 TCCTGCTCTTTGGGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGCG
* * * *
3249360 TCCTGCTCTTTGAGGATTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGAAGAAGGCG
1 TCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAA-AAGGCG
* *
3249421 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTT--AAG---AGGCG
1 TCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* *
3249476 TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCG
1 TCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAGGCG
* * *
3249537 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTT-----AAAAGGCA
1 TCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* * * *
3249592 TCCTACTCTTTGAGGATTAGGAAGTGCCACCAACTTGTGTGAGCTTTAAAAGGAAAAGGCG
1 TCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAGGCG
* *
3249653 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTT-----AAAAGGCG
1 TCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
*
3249708 TCCTGCTCTTTGAGGACTA-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCG
1 TCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAGGCG
* * * *
3249768 TCCTACTTTTTGAGGACTA-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAGGCA
1 TCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTT-AAAAG-AAAAGGCG
*
3249829 TCCAGCTCTTTGAGGACT
1 TCCTGCTCTTTGAGGACT
3249847 GGAAGGGCTA
Statistics
Matches: 902, Mismatches: 67, Indels: 74
0.86 0.06 0.07
Matches are distributed among these distances:
52 3 0.00
53 29 0.03
54 27 0.03
55 336 0.37
56 4 0.00
57 2 0.00
58 1 0.00
59 26 0.03
60 115 0.13
61 358 0.40
62 1 0.00
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.26
Consensus pattern (60 bp):
TCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
Found at i:3249055 original size:36 final size:36
Alignment explanation
Indices: 3249015--3249117 Score: 93
Period size: 36 Copynumber: 3.2 Consensus size: 36
3249005 GCATCCTACT
3249015 CTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGG
1 CTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGG
* * * *
3249051 CTTTGA--A-AAGAAAAAG-CATC--C-TG-CT---
1 CTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGG
3249076 CTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGG
1 CTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGG
3249112 CTTTGA
1 CTTTGA
3249118 AAGGTATCCT
Statistics
Matches: 48, Mismatches: 8, Indels: 22
0.62 0.10 0.28
Matches are distributed among these distances:
25 6 0.12
27 1 0.02
28 8 0.17
29 5 0.10
30 1 0.02
31 1 0.02
32 5 0.10
33 8 0.17
34 1 0.02
36 12 0.25
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.26
Consensus pattern (36 bp):
CTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGG
Found at i:3249058 original size:116 final size:114
Alignment explanation
Indices: 3248783--3249820 Score: 1102
Period size: 116 Copynumber: 9.0 Consensus size: 114
3248773 AATAAAGTGT
* *
3248783 ATCCTGCTCATTGAGGACTA-AAAAGTGCCACCAAC-T-CGTGGGCTTT-G-AAAGGCGTCCTGC
1 ATCCTGCTCTTTGAGGACTAGAAAA-TGCCACCAACTTGTGTGGGCTTTAGAAAAGGCGTCCTGC
*
3248843 TCTTTGAGGACT-AAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG-GT
65 TCTTTGAGGACTGAAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAAGAGC
* * *
3248891 GTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT-G-AAAGGTGTCCTGCT
1 ATCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTAGAAAAGGCGTCCTGCT
* *
3248954 CTTTGGGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGC
66 CTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAG----AGC
* * *
3249007 ATCCTACTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCC
1 ATCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTT----AGAAAAGGCGTCC
*
3249072 TGCTCTTTGAGGACTAGAAAA-TGCCACCAACTTGTGTGGGCTTTG-AAAG-GT
62 TGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGAGC
* * *
3249123 ATCCTGCTCTTTGAGGATTGGAAAATGCCACCAACTTGTGTGGGCTTT-G-AAAGGCATCCTGCT
1 ATCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTAGAAAAGGCGTCCTGCT
* *
3249186 CCTTGAGGATTGGAAAA-TGCCACCAACTTGTGTGGGCTTTGAAAGAAGAAGGC
66 CTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTTG-AA-AAG-A-GC
* ** * *
3249239 GTCCTGCTCTTTGAGGACTA-AAGGTGCCACTAACTTGTGTGGGCTTTAAAAGAAAAAGCGTCCT
1 ATCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTT---AGAAAAGGCGTCCT
*
3249303 GCTCTTTGGGGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGC
63 GCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAG----AGC
* *
3249359 ATCCTGCTCTTTGAGGATTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGAAGAAGGCGTCC
1 ATCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTT---AGAA-AAGGCGTCC
** *
3249424 TGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTT-AAGAG-GC
62 TGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGAGC
* * * *
3249475 GTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCC
1 ATCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTT---A-GAAAAGGCGTCC
**
3249540 TGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTT-AAAAG-GC
62 TGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGAGC
* * * * *
3249591 ATCCTACTCTTTGAGGATTAGGAAGTGCCACCAACTTGTGTGAGCTTTAAAAGGAAAAGGCGTCC
1 ATCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTT---A-GAAAAGGCGTCC
**
3249656 TGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTT-AAAAG-GC
62 TGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGAGC
* **
3249707 GTCCTGCTCTTTGAGGACTA-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCC
1 ATCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTT---A-GAAAAGGCGTCC
* * * *
3249771 TACTTTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGA
62 TGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGA
3249821 AAAAGGCATC
Statistics
Matches: 821, Mismatches: 72, Indels: 66
0.86 0.08 0.07
Matches are distributed among these distances:
108 27 0.03
109 5 0.01
110 108 0.13
111 9 0.01
112 1 0.00
113 3 0.00
114 25 0.03
115 83 0.10
116 345 0.42
117 2 0.00
118 3 0.00
119 3 0.00
120 69 0.08
121 44 0.05
122 89 0.11
123 5 0.01
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (114 bp):
ATCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTAGAAAAGGCGTCCTGCT
CTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGAGC
Found at i:3249119 original size:28 final size:28
Alignment explanation
Indices: 3249088--3249229 Score: 73
Period size: 28 Copynumber: 5.1 Consensus size: 28
3249078 TTGAGGACTA
3249088 GAAAATGCCACCAACTTGTGTGGGCTTT
1 GAAAATGCCACCAACTTGTGTGGGCTTT
** * * * *
3249116 GAAAGGTAT-CCTGC-TCTT-TG-AGGATTG
1 GAAA---ATGCCACCAACTTGTGTGGGCTTT
3249143 GAAAATGCCACCAACTTGTGTGGGCTTT
1 GAAAATGCCACCAACTTGTGTGGGCTTT
* ** ** * *
3249171 G-AAA-GGCATCCTGCTCCT-TGAGGATTG
1 GAAAATGCCA-CCAACTTGTGTG-GGCTTT
3249198 GAAAATGCCACCAACTTGTGTGGGCTTT
1 GAAAATGCCACCAACTTGTGTGGGCTTT
3249226 GAAA
1 GAAA
3249230 GAAGAAGGCG
Statistics
Matches: 76, Mismatches: 26, Indels: 24
0.60 0.21 0.19
Matches are distributed among these distances:
24 2 0.03
25 3 0.04
26 8 0.11
27 23 0.30
28 27 0.36
29 8 0.11
30 3 0.04
31 2 0.03
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (28 bp):
GAAAATGCCACCAACTTGTGTGGGCTTT
Found at i:3256230 original size:52 final size:51
Alignment explanation
Indices: 3256165--3256285 Score: 161
Period size: 52 Copynumber: 2.3 Consensus size: 51
3256155 AACGAGGTTG
* *
3256165 GAGTATCCTCGATTGTGAAAAATTGGTGTTTTTGGAAATAAAATCGGAGTTA
1 GAGTATCCCCGATTGTGAAAAATTGGTG-TTTTGAAAATAAAATCGGAGTTA
** * *
3256217 GAGTATCCCCGATTAAAGGAAAATTGGTGTTTTGAAAATAAAATCGGAGTTG
1 GAGTATCCCCGATT-GTGAAAAATTGGTGTTTTGAAAATAAAATCGGAGTTA
*
3256269 GAATATCCCCGATTGTG
1 GAGTATCCCCGATTGTG
3256286 GAGAATTGAG
Statistics
Matches: 59, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
51 1 0.02
52 47 0.80
53 11 0.19
ACGTcount: A:0.33, C:0.11, G:0.25, T:0.31
Consensus pattern (51 bp):
GAGTATCCCCGATTGTGAAAAATTGGTGTTTTGAAAATAAAATCGGAGTTA
Found at i:3256248 original size:53 final size:52
Alignment explanation
Indices: 3256183--3256282 Score: 164
Period size: 52 Copynumber: 1.9 Consensus size: 52
3256173 TCGATTGTGA
* *
3256183 AAAATTGGTGTTTTTGGAAATAAAATCGGAGTTAGAGTATCCCCGATTAAAGG
1 AAAATTGGTG-TTTTGAAAATAAAATCGGAGTTAGAATATCCCCGATTAAAGG
*
3256236 AAAATTGGTGTTTTGAAAATAAAATCGGAGTTGGAATATCCCCGATT
1 AAAATTGGTGTTTTGAAAATAAAATCGGAGTTAGAATATCCCCGATT
3256283 GTGGAGAATT
Statistics
Matches: 44, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
52 34 0.77
53 10 0.23
ACGTcount: A:0.36, C:0.10, G:0.23, T:0.31
Consensus pattern (52 bp):
AAAATTGGTGTTTTGAAAATAAAATCGGAGTTAGAATATCCCCGATTAAAGG
Found at i:3258673 original size:20 final size:20
Alignment explanation
Indices: 3258627--3258681 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
3258617 TAAAATTTCC
*
3258627 AAATGTATCGATACAAAGAT
1 AAATGTATCGATACAAAGAA
*** *
3258647 CCTTGTATCGATACACAGAA
1 AAATGTATCGATACAAAGAA
3258667 AAATGTATCGATACA
1 AAATGTATCGATACA
3258682 TTTCCTTGGC
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.44, C:0.16, G:0.15, T:0.25
Consensus pattern (20 bp):
AAATGTATCGATACAAAGAA
Found at i:3258725 original size:19 final size:19
Alignment explanation
Indices: 3258701--3258755 Score: 101
Period size: 19 Copynumber: 2.9 Consensus size: 19
3258691 CAGTAGCTAA
*
3258701 TTATGTATCGATACAATAC
1 TTATGTATCGATACAAAAC
3258720 TTATGTATCGATACAAAAC
1 TTATGTATCGATACAAAAC
3258739 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
3258756 TTGTTGAATT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 35 1.00
ACGTcount: A:0.40, C:0.15, G:0.11, T:0.35
Consensus pattern (19 bp):
TTATGTATCGATACAAAAC
Found at i:3258817 original size:21 final size:21
Alignment explanation
Indices: 3258791--3258867 Score: 111
Period size: 21 Copynumber: 3.7 Consensus size: 21
3258781 GTTGGGACCC
* *
3258791 TGTATCGATACATTTGTA-GAA
1 TGTATCGATACA-TTCTACAAA
*
3258812 TGTATCGATACATTCCACAAA
1 TGTATCGATACATTCTACAAA
3258833 TGTATCGATACATTCTACAAA
1 TGTATCGATACATTCTACAAA
3258854 TGTATCGATACATT
1 TGTATCGATACATT
3258868 TGAAATTTTT
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
20 3 0.06
21 48 0.94
ACGTcount: A:0.35, C:0.17, G:0.13, T:0.35
Consensus pattern (21 bp):
TGTATCGATACATTCTACAAA
Found at i:3261717 original size:289 final size:289
Alignment explanation
Indices: 3261194--3261779 Score: 1093
Period size: 289 Copynumber: 2.0 Consensus size: 289
3261184 GTCAAAACAT
3261194 TCTT-AGTTGGAGGCCTAACTCTCACTTTATGTCCCCAGTGGAGTCGCCAAACTGTCGTAACGTG
1 TCTTGAGTTGGAGGCCTAACTCTCACTTTATGTCCCCAGTGGAGTCGCCAAACTGTCGTAACGTG
* *
3261258 CGCTCGACCCCGACGATAGGGTAAATGAGGCACGTTCGACTTAATATCCCTCACGATTGGGAATT
66 CGCTCGACCCCGACGATAGGGCAAATGAGGCACGCTCGACTTAATATCCCTCACGATTGGGAATT
3261323 TCTGTGGCATGATGGGAAATATGTTGATTAAAGGGGGAAGATCAGTAGATGAATCGCCCATTAAT
131 TCTGTGGCATGATGGGAAATATGTTGATTAAAGGGGGAAGATCAGTAGATGAATCGCCCATTAAT
* *
3261388 TGATCTTCAATGGTCACTATGAAGTGACCGAGATTTTGGAGTCGCGACCGATCATTTCGGGCTAG
196 TGATCTTCAATGGTCACTACGAAGTGACCAAGATTTTGGAGTCGCGACCGATCATTTCGGGCTAG
*
3261453 GCATGATTGGATGCCTATTGAAAGCTATG
261 GCATGATTGGATGCCTATTGAAACCTATG
3261482 TCTTGAGTTGGAGGCCTAACTCTCACTTTATGTCCCCAGTGGAGTCGCCAAACTGTCGTAACGTG
1 TCTTGAGTTGGAGGCCTAACTCTCACTTTATGTCCCCAGTGGAGTCGCCAAACTGTCGTAACGTG
* *
3261547 CGCTTGACCCCGGCGATAGGGCAAATGAGGCACGCTCGACTTAATATCCCTCACGATTGGGAATT
66 CGCTCGACCCCGACGATAGGGCAAATGAGGCACGCTCGACTTAATATCCCTCACGATTGGGAATT
*
3261612 TCTGTGGCATGATGGTAAATATGTTGATTAAAGGGGGAAGATCAGTAGATGAATCGCCCATTAAT
131 TCTGTGGCATGATGGGAAATATGTTGATTAAAGGGGGAAGATCAGTAGATGAATCGCCCATTAAT
3261677 TGATCTTCAATGGTCACTACGAAGTGACCAAGATTTTGGAGTCGCGACCGATCATTTCGGGCTAG
196 TGATCTTCAATGGTCACTACGAAGTGACCAAGATTTTGGAGTCGCGACCGATCATTTCGGGCTAG
3261742 GCATGATTGGATGCCTATTGAAACCTATG
261 GCATGATTGGATGCCTATTGAAACCTATG
3261771 TCTTGAGTT
1 TCTTGAGTT
3261780 ACGAAACTCA
Statistics
Matches: 289, Mismatches: 8, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
288 4 0.01
289 285 0.99
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.28
Consensus pattern (289 bp):
TCTTGAGTTGGAGGCCTAACTCTCACTTTATGTCCCCAGTGGAGTCGCCAAACTGTCGTAACGTG
CGCTCGACCCCGACGATAGGGCAAATGAGGCACGCTCGACTTAATATCCCTCACGATTGGGAATT
TCTGTGGCATGATGGGAAATATGTTGATTAAAGGGGGAAGATCAGTAGATGAATCGCCCATTAAT
TGATCTTCAATGGTCACTACGAAGTGACCAAGATTTTGGAGTCGCGACCGATCATTTCGGGCTAG
GCATGATTGGATGCCTATTGAAACCTATG
Found at i:3264480 original size:52 final size:52
Alignment explanation
Indices: 3264402--3264551 Score: 210
Period size: 52 Copynumber: 2.9 Consensus size: 52
3264392 CGAAATATGA
* * *
3264402 AAATTTACCTACATGTATCGATACATTTAATAGTGTATCGATACATCTGGGT
1 AAATTTGCCTACATGTATCGATACATTTAATAATGTATCGATACATCTGGGC
* *
3264454 AAATTTGCATACATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
1 AAATTTGCCTACATGTATCGATACATTTAATAATGTATCGATACATCTGGGC
* *** *
3264506 AAATTTGCCTGCATGTATCGATACAAAGATTAATGTATCGATACAT
1 AAATTTGCCTACATGTATCGATACATTTAATAATGTATCGATACAT
3264552 TTGAGTAATG
Statistics
Matches: 86, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
52 86 1.00
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.35
Consensus pattern (52 bp):
AAATTTGCCTACATGTATCGATACATTTAATAATGTATCGATACATCTGGGC
Found at i:3264562 original size:21 final size:21
Alignment explanation
Indices: 3264518--3264574 Score: 80
Period size: 21 Copynumber: 2.8 Consensus size: 21
3264508 ATTTGCCTGC
** *
3264518 ATGTATCGATACA-AAGATTA
1 ATGTATCGATACATTTGAGTA
3264538 ATGTATCGATACATTTGAGTA
1 ATGTATCGATACATTTGAGTA
3264559 ATGTATCGATACATTT
1 ATGTATCGATACATTT
3264575 TTTAGCACTA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
20 13 0.39
21 20 0.61
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.37
Consensus pattern (21 bp):
ATGTATCGATACATTTGAGTA
Found at i:3264648 original size:33 final size:33
Alignment explanation
Indices: 3264591--3264657 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
3264581 ACTAGCTTAA
*
3264591 ATTGTATCGATACAAAAAAATATGTATCCATAC
1 ATTGTATCGATACAAAAAAATATGTATCAATAC
* ***
3264624 ATTGTATCGATACAACACTTTATGTATCAATAC
1 ATTGTATCGATACAAAAAAATATGTATCAATAC
3264657 A
1 A
3264658 AATCGTTGAA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.42, C:0.16, G:0.09, T:0.33
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCAATAC
Found at i:3265229 original size:15 final size:16
Alignment explanation
Indices: 3265199--3265231 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
3265189 GAGTTTGATT
3265199 AAAAATTTCATGTAGA
1 AAAAATTTCATGTAGA
*
3265215 AAAAATTT-ATTTAGA
1 AAAAATTTCATGTAGA
3265230 AA
1 AA
3265232 TTCCATGTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.55, C:0.03, G:0.09, T:0.33
Consensus pattern (16 bp):
AAAAATTTCATGTAGA
Found at i:3266363 original size:20 final size:20
Alignment explanation
Indices: 3266338--3266391 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
3266328 CTACCACAGT
*
3266338 TTGTATCGATACATGGT-ACA
1 TTGTATCGATACATGATGA-A
3266358 TTGTATCGATACATGATGAA
1 TTGTATCGATACATGATGAA
*
3266378 TTGTATCAATACAT
1 TTGTATCGATACAT
3266392 TGCTTTTAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 30 0.97
21 1 0.03
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.37
Consensus pattern (20 bp):
TTGTATCGATACATGATGAA
Found at i:3269488 original size:21 final size:20
Alignment explanation
Indices: 3269459--3269501 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
3269449 GGCTAGTATG
*
3269459 GGGACTGCCCGGTTGCGACCT
1 GGGACTG-CCGGTCGCGACCT
*
3269480 GGGAGTGCCGGTCGCGACCT
1 GGGACTGCCGGTCGCGACCT
3269500 GG
1 GG
3269502 TGGTGCTGCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.09, C:0.30, G:0.44, T:0.16
Consensus pattern (20 bp):
GGGACTGCCGGTCGCGACCT
Found at i:3276159 original size:13 final size:13
Alignment explanation
Indices: 3276141--3276166 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3276131 CAATTTTTTG
3276141 TGTATCGATACAT
1 TGTATCGATACAT
3276154 TGTATCGATACAT
1 TGTATCGATACAT
3276167 ACTTTGGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3276165 original size:33 final size:33
Alignment explanation
Indices: 3276121--3276185 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
3276111 TACAAGACAA
* *
3276121 TGTATCAATACA-ATTTTTTGTGTATCGATACAT
1 TGTATCAATACATA-CTTTGGTGTATCGATACAT
*
3276154 TGTATCGATACATACTTTGGTGTATCGATACA
1 TGTATCAATACATACTTTGGTGTATCGATACA
3276186 AGTTTAGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 27 0.96
34 1 0.04
ACGTcount: A:0.29, C:0.14, G:0.15, T:0.42
Consensus pattern (33 bp):
TGTATCAATACATACTTTGGTGTATCGATACAT
Found at i:3279868 original size:13 final size:13
Alignment explanation
Indices: 3279850--3279874 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3279840 ATTACTCAAA
3279850 TGTATCGATACAT
1 TGTATCGATACAT
3279863 TGTATCGATACA
1 TGTATCGATACA
3279875 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3279925 original size:52 final size:52
Alignment explanation
Indices: 3279883--3280008 Score: 234
Period size: 52 Copynumber: 2.4 Consensus size: 52
3279873 CACTGATCTT
* *
3279883 TGTATCAATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAAATGTATCGATACACTATGAAA
3279935 TGTATCGATACATGCAGGCAAATTTGCCCAAATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAAATGTATCGATACACTATGAAA
3279987 TGTATCGATACATGCAGGCAAA
1 TGTATCGATACATGCAGGCAAA
3280009 ATTTCATATT
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 72 1.00
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAAATGTATCGATACACTATGAAA
Found at i:3285925 original size:21 final size:20
Alignment explanation
Indices: 3285892--3285938 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 20
3285882 AAATCTTTTA
* *
3285892 CAAATTTCCTCATTTTTACAT
1 CAAAATTCCTCATTTGT-CAT
*
3285913 CAAAATTCTTCATTTGTCAT
1 CAAAATTCCTCATTTGTCAT
3285933 CAAAAT
1 CAAAAT
3285939 CACCAACAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 9 0.39
21 14 0.61
ACGTcount: A:0.34, C:0.21, G:0.02, T:0.43
Consensus pattern (20 bp):
CAAAATTCCTCATTTGTCAT
Found at i:3288301 original size:20 final size:19
Alignment explanation
Indices: 3288251--3288307 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 19
3288241 TTGTATCCAT
*
3288251 ACATTGTATCGATACATGT
1 ACATTGTATCGATACATGG
* *
3288270 TCATTATATCGATACATGG
1 ACATTGTATCGATACATGG
3288289 ACAATTGTATCGATACATG
1 AC-ATTGTATCGATACATG
3288308 AAACTGGTAG
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
19 17 0.53
20 15 0.47
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (19 bp):
ACATTGTATCGATACATGG
Found at i:3291020 original size:60 final size:59
Alignment explanation
Indices: 3290899--3291138 Score: 267
Period size: 60 Copynumber: 4.1 Consensus size: 59
3290889 CAAAAAGGCG
* *
3290899 AAAGGAGAGAGCGTCCTGCTCTTTGAGGACTAGGAA-GTGCCACCAACTTGTGTGGGCTTTA
1 AAAGAAGA-AGCGTCCTGCTCTTTGAGGACT--GAAGGTGCCACCAACTTATGTGGGCTTTA
*
3290960 AAAGAAGAATGCGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAGCTTATGTGGGCTTTA
1 AAAGAAGAA-GCGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTATGTGGGCTTTA
* * * * * *
3291020 AAAGAAAAAGGTGTCCTGCTCGTTGAGGACTGAAGGTGCCACCAGCATATATGGGCTTT-
1 AAAGAAGAA-GCGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTATGTGGGCTTTA
** * *
3291079 -AA-AAG--GCGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTG
1 AAAGAAGAAGCGTCCTGCTCTTTGAGGACTG-AAGGTGCCACCAACTTATGTGGGCTTTA
3291135 AAAG
1 AAAG
3291139 GCGTCCTGAT
Statistics
Matches: 155, Mismatches: 18, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
54 20 0.13
55 21 0.14
57 4 0.03
58 2 0.01
59 3 0.02
60 77 0.50
61 28 0.18
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.25
Consensus pattern (59 bp):
AAAGAAGAAGCGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTATGTGGGCTTTA
Found at i:3291247 original size:209 final size:210
Alignment explanation
Indices: 3290970--3291374 Score: 562
Period size: 209 Copynumber: 1.9 Consensus size: 210
3290960 AAAGAAGAAT
* * *
3290970 GCGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAGCTTATGTGGGCTTTAAAAGAAAAAGGTGTC
1 GCGTCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTATGTGGGCTTTAAAAGAAAAAGGCGTC
* *
3291035 CTGCTCGTTGAGGACTGAAGGTGCCACCAGCATATATGGGCTTTAAAAG-G-CGTCCTGCTCTTT
66 CTGCTCGTTGAGGACTGAAGGTGCCACCAGCATATACGGGCTTTAAAAGAGACATCCTGCTCTTT
* *
3291098 GAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGATCTTTGAGGACTAAA
131 GAGGACTGAAAAATGCCACCAACTCGTGTGGGCTTTAAAAGGCGTCCTGATCTTTGAGGACTAAA
3291163 GGGTGAAAGGAGAGA
196 GGGTGAAAGGAGAGA
* * * *
3291178 GCGTCTTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGT
1 GCGTCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTATGTGGGCTTTAAAAGAAAAAGGCGT
* * * *
3291243 CCTGCTCTTTGAGGACTGAAGGTGCCACCAGCTTATGCGGGCTTTAAAAGAAAAAGACATCTTGC
65 CCTGCTCGTTGAGGACTGAAGGTGCCACCAGCATATACGGGCTTTAAAAG----AGACATCCTGC
* *** * *
3291308 TCTTTGAGGACTGGAGGGTGCCACCAACTCGTGTGGGCTTTAAAAGGCGTCCTGCTTTTTGAGGA
126 TCTTTGAGGACTGAAAAATGCCACCAACTCGTGTGGGCTTTAAAAGGCGTCCTGATCTTTGAGGA
3291373 CT
191 CT
3291375 GAAAAGTGCC
Statistics
Matches: 169, Mismatches: 21, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
208 20 0.12
209 83 0.49
214 1 0.01
215 65 0.38
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (210 bp):
GCGTCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTATGTGGGCTTTAAAAGAAAAAGGCGTC
CTGCTCGTTGAGGACTGAAGGTGCCACCAGCATATACGGGCTTTAAAAGAGACATCCTGCTCTTT
GAGGACTGAAAAATGCCACCAACTCGTGTGGGCTTTAAAAGGCGTCCTGATCTTTGAGGACTAAA
GGGTGAAAGGAGAGA
Found at i:3291249 original size:61 final size:61
Alignment explanation
Indices: 3291178--3291679 Score: 599
Period size: 61 Copynumber: 8.3 Consensus size: 61
3291168 AAAGGAGAGA
* *
3291178 GCGTCTTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAG
1 GCGTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
* * * * *
3291239 GCGTCCTGCTCTTTGAGGACT-GAAGGTGCCACCAGCTTATGCGGGCTTTAAAAGAAAAAG
1 GCGTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
* * * * ** *
3291299 ACATCTTGCTCTTTGAGGACTGGAGGGTGCCACCAACTCGTGTGGGCTTT------AAAAG
1 GCGTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
* * **
3291354 GCGTCCTGCTTTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGAAG
1 GCGTCCTGCTCTTTGAGGACTAG-AAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
* * * *
3291415 GCGCCCTGCTCTTTGAGGACCAGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAG
1 GCGTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
* *
3291476 GCGTCATGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAG
1 GCGTCCTGCTCTTTGAGGACTAG-AAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
* * ** * *
3291538 GCGTCCTGCTCGTTGAGGACTGGAGGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAG
1 GCGTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
* * * * *
3291599 GCATCTTGTTCATTGAGGA-TTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
1 GCGTCCTGCTCTTTGAGGACTAG-AAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
3291660 GCGTCCTGCTCTTTGAGGAC
1 GCGTCCTGCTCTTTGAGGAC
3291680 AAAGGAGAAA
Statistics
Matches: 372, Mismatches: 57, Indels: 23
0.82 0.13 0.05
Matches are distributed among these distances:
54 1 0.00
55 46 0.12
60 53 0.14
61 216 0.58
62 56 0.15
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (61 bp):
GCGTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
Found at i:3291547 original size:123 final size:122
Alignment explanation
Indices: 3291178--3291679 Score: 631
Period size: 123 Copynumber: 4.2 Consensus size: 122
3291168 AAAGGAGAGA
* * *
3291178 GCGTCTTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGT
1 GCGTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTCGTGTGGGCTTTAAAAGGAAAAGGCGT
* * * *
3291243 CCTGCTCTTTGAGGACTG-AAGGTGCCACCAGCTTATGCGGGCTTTAAAAGAAAAAG
66 CCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAG
* * * * **
3291299 ACATCTTGCTCTTTGAGGACTGGAGGGTGCCACCAACTCGTGTGGGCTTT------AAAAGGCGT
1 GCGTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTCGTGTGGGCTTTAAAAGGAAAAGGCGT
* * ***
3291358 CCTGCTTTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGAAG
66 CCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAG
* * * * *
3291415 GCGCCCTGCTCTTTGAGGACCAGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGGCGT
1 GCGTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTCGTGTGGGCTTTAAAAGGAAAAGGCGT
*
3291480 CATGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAG
66 CCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAG
* * ** * *
3291538 GCGTCCTGCTCGTTGAGGACTGGAGGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAGGCAT
1 GCGTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTCGTGTGGGCTTTAAAAGGAAAAGGCGT
* * * * *
3291603 CTTGTTCATTGAGGATTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
66 CCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAG
3291660 GCGTCCTGCTCTTTGAGGAC
1 GCGTCCTGCTCTTTGAGGAC
3291680 AAAGGAGAAA
Statistics
Matches: 324, Mismatches: 49, Indels: 15
0.84 0.13 0.04
Matches are distributed among these distances:
115 25 0.08
116 70 0.22
121 44 0.14
122 82 0.25
123 103 0.32
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (122 bp):
GCGTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTCGTGTGGGCTTTAAAAGGAAAAGGCGT
CCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAG
Found at i:3291583 original size:184 final size:176
Alignment explanation
Indices: 3291178--3291890 Score: 689
Period size: 184 Copynumber: 4.1 Consensus size: 176
3291168 AAAGGAGAGA
* *
3291178 GCGTCTTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGT
1 GCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGT
** * * * * * * *
3291243 CCTGCTCTTTGAGGACTGAAGGTGCCACCAGCTTATGCGGGCTTTAAAAGAAAAAGACATCTTGC
66 CCTGCTCTTTGAGGACTGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCATGC
* **
3291308 TCTTTGAGGACTGGAGGGTGCCACCAACTCGTGTGGGCTTTAAAAG
131 TCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTTAAAAG
* * * * *
3291354 GCGTCCTGCTTTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGAAGGCGC
1 GCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGT
* *
3291419 CCTGCTCTTTGAGGACCAGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGGCGTCATG
66 CCTGCTCTTTGAGGA-CTGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCATG
*
3291484 CTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAG
130 CTCTTTGAGGACT-GAAAAGTGCCACCAACTCGTGTGGGCTTT------AAAAG
* ** * * * *
3291538 GCGTCCTGCTCGTTGAGGACTGGAGGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAGGCAT
1 GCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGT
* * * * *
3291603 CTTGTTCATTGAGGATTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTG
66 CCTGCTCTTTGAGGACTGAAAA-TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCATG
* **
3291668 CTCTTTGAGGAC---AAAG-G--A-GAA------AAGG----AAAAG
130 CTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTTAAAAG
* ** * * *
3291698 GTGTCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGGCA
1 GCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT-AAAAGGAGAAGGCG
*** * * * *
3291763 TCCTGCTCTTTGAGGACTGGAGGGTGCCACAAACTCGTGTGGGCTTT------AAAAGGCATCTT
65 TCCTGCTCTTTGAGGACT-GAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCAT
* *
3291822 GCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAG
129 GCTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTTAAAAG
*
3291870 GCGTCCTGCTTTTTGAGGACT
1 GCGTCCTGCTCTTTGAGGACT
3291891 AAAGGGTGAA
Statistics
Matches: 439, Mismatches: 70, Indels: 60
0.77 0.12 0.11
Matches are distributed among these distances:
155 23 0.05
158 3 0.01
159 1 0.00
160 48 0.11
161 48 0.11
162 4 0.01
168 2 0.00
170 2 0.00
172 24 0.05
176 75 0.17
177 52 0.12
178 25 0.06
179 1 0.00
180 4 0.01
183 5 0.01
184 122 0.28
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.25
Consensus pattern (176 bp):
GCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGT
CCTGCTCTTTGAGGACTGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCATGC
TCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTTAAAAG
Found at i:3291759 original size:62 final size:60
Alignment explanation
Indices: 3291687--3291869 Score: 223
Period size: 62 Copynumber: 3.1 Consensus size: 60
3291677 GACAAAGGAG
** * *
3291687 AAAAGGAAAAGGTGTCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTTT
1 AAAA-GAAAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT
* * * *
3291748 GAAAAGAAAAAGGCATCCTGCTCTTTGAGGACTGGAGGGTGCCACAAACTCGTGTGGGCTTT
1 -AAAAG-AAAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT
*
3291810 -----AAAAGGCATCTTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT
1 AAAAGAAAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT
3291865 AAAAG
1 AAAAG
3291870 GCGTCCTGCT
Statistics
Matches: 102, Mismatches: 13, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
55 50 0.49
61 1 0.01
62 51 0.50
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (60 bp):
AAAAGAAAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT
Found at i:3291844 original size:55 final size:55
Alignment explanation
Indices: 3291755--3291895 Score: 212
Period size: 55 Copynumber: 2.6 Consensus size: 55
3291745 TTTGAAAAGA
* *
3291755 AAAAGGCATCCTGCTCTTTGAGGACTGGAGGGTGCCACAAACTCGTGTGGGCTTT
1 AAAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACAAACTCGTGTGGGCTTT
* * *
3291810 AAAAGGCATCTTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT
1 AAAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACAAACTCGTGTGGGCTTT
* *
3291865 AAAAGGCGTCCTGCTTTTTGAGGACT-AAAGG
1 AAAAGGCATCCTGCTCTTTGAGGACTGAAAGG
3291896 GTGAAAGGAG
Statistics
Matches: 78, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
54 5 0.06
55 73 0.94
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (55 bp):
AAAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACAAACTCGTGTGGGCTTT
Found at i:3291991 original size:210 final size:209
Alignment explanation
Indices: 3291466--3292105 Score: 849
Period size: 210 Copynumber: 3.0 Consensus size: 209
3291456 GTGGGCTTTG
*
3291466 AAAGGAAAAGGCGTCATGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAA
1 AAAGGAAAAGGCGTCCTGCTCTTTGAGGACTAG-AAAGTGCCACCAACTTGTGTGGGCTTTAAAA
* *
3291531 GAAAAAGGCGTCCTGCTCGTTGAGGACTGGAGGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAA
65 GAAAAAGGCATCCTGCTCTTTGAGGACTGGAGGGTGCCACCAACTCGTGTGGGCTTT------AA
* * *
3291596 AAGGCATCTTGTTCATTGAGGATTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGG
124 AAGGCATCTTGCTCTTTGAGGACTG-AAAGTGCCACCAACTTGTGTGGGCTTT------AAAAGG
3291661 CGTCCTGCTCTTTGAGGAC-AAAGGAGA
182 CGTCCTGCTCTTTGAGGACTAAAGGAGA
* *
3291688 AAAGGAAAAGGTGTCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAA
1 AAAGGAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTT-AAAA
*
3291753 GAAAAAGGCATCCTGCTCTTTGAGGACTGGAGGGTGCCACAAACTCGTGTGGGCTTTAAAAGGCA
65 GAAAAAGGCATCCTGCTCTTTGAGGACTGGAGGGTGCCACCAACTCGTGTGGGCTTTAAAAGGCA
*
3291818 TCTTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTTTT
130 TCTTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTT
*
3291883 TGAGGACTAAAGG-GTG
194 TGAGGACTAAAGGAG-A
* * *
3291899 AAAGG-AGAGAGCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGTTTTAAAA
1 AAAGGAAAAG-GCGTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAA
* * *
3291963 -AGAAAAGGCATCCTACTCTTTGAGGACT-GAGAAGTGCCACCAACTCGTGTGGGCTTTGAAAGG
65 GA-AAAAGGCATCCTGCTCTTTGAGGACTGGAG-GGTGCCACCAACTCGTGTGGGCTTTAAAAGG
* * * * * *
3292026 CGTCCTACTCTTTGAGGACTGGAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTC
128 CATCTTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTC
3292091 TTTGAGGACTAAAGG
192 TTTGAGGACTAAAGG
3292106 TGCCACCAAC
Statistics
Matches: 383, Mismatches: 27, Indels: 28
0.87 0.06 0.06
Matches are distributed among these distances:
209 4 0.01
210 153 0.40
211 60 0.16
215 3 0.01
216 48 0.13
221 27 0.07
222 88 0.23
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.25
Consensus pattern (209 bp):
AAAGGAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
AAAAAGGCATCCTGCTCTTTGAGGACTGGAGGGTGCCACCAACTCGTGTGGGCTTTAAAAGGCAT
CTTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTG
AGGACTAAAGGAGA
Found at i:3292013 original size:61 final size:55
Alignment explanation
Indices: 3291909--3292159 Score: 303
Period size: 55 Copynumber: 4.5 Consensus size: 55
3291899 AAAGGAGAGA
* * *
3291909 GCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGTTTTAAAAAGAAAAG
1 GCGTCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTCGTGTGGGCTTT-----G-AAAG
*
3291970 GCATCCTACTCTTTGAGGACTGAGAA-GTGCCACCAACTCGTGTGGGCTTTGAAAG
1 GCGTCCTACTCTTTGAGGACT-AGAAGGTGCCACCAACTCGTGTGGGCTTTGAAAG
* **
3292025 GCGTCCTACTCTTTGAGGACTGGAAAATGCCACCAACTCGTGTGGGCTTTGAAAG
1 GCGTCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTCGTGTGGGCTTTGAAAG
* **
3292080 GCGTCCTGCTCTTTGAGGACTA-AAGGTGCCACCAACTTATGTGGGCTTT-AGAAG
1 GCGTCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTCGTGTGGGCTTTGA-AAG
*
3292134 GCGTCCTGCTCTTTGAGGACTA-AAGG
1 GCGTCCTACTCTTTGAGGACTAGAAGG
3292160 GTGAAAGGAG
Statistics
Matches: 174, Mismatches: 13, Indels: 13
0.87 0.06 0.06
Matches are distributed among these distances:
53 1 0.01
54 55 0.32
55 72 0.41
56 1 0.01
61 41 0.24
62 4 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (55 bp):
GCGTCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTCGTGTGGGCTTTGAAAG
Found at i:3292035 original size:27 final size:27
Alignment explanation
Indices: 3292005--3292086 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
3291995 AGTGCCACCA
3292005 ACTCGTGTGGGCTTTGAAAGGCGTCCT
1 ACTCGTGTGGGCTTTGAAAGGCGTCCT
* * * ** *
3292032 ACTC-TTTGAGGAC-TGGAAAATGCCACCA
1 ACTCGTGTG-GG-CTTTG-AAAGGCGTCCT
3292060 ACTCGTGTGGGCTTTGAAAGGCGTCCT
1 ACTCGTGTGGGCTTTGAAAGGCGTCCT
3292087 GCTCTTTGAG
Statistics
Matches: 38, Mismatches: 12, Indels: 10
0.63 0.20 0.17
Matches are distributed among these distances:
26 3 0.08
27 16 0.42
28 16 0.42
29 3 0.08
ACGTcount: A:0.21, C:0.23, G:0.29, T:0.27
Consensus pattern (27 bp):
ACTCGTGTGGGCTTTGAAAGGCGTCCT
Found at i:3292040 original size:155 final size:149
Alignment explanation
Indices: 3291763--3292045 Score: 397
Period size: 155 Copynumber: 1.9 Consensus size: 149
3291753 GAAAAAGGCA
* * * *
3291763 TCCTGCTCTTTGAGGACTGGAGGGTGCCACAAACTCGTGTGGGCTTTAAAAGGCATCTTGCTCTT
1 TCCTGCTCTTTGAGGACTAGAAGGTGCCACAAACTCGTGTGGGCTTTAAAAGGCATCCTACTCTT
* * *
3291828 TGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTTTTTGAGGACTAA
66 TGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAGGCGTCCTACTCTTTGAGGACTAA
3291893 AGGGTGAAAGGAGAGAGCG
131 AGGGTGAAAGGAGAGAGCG
* * *
3291912 TCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGTTTTAAAAAGAAAAGGCATCCT
1 TCCTGCTCTTTGAGGACTAGAAGGTGCCACAAACTCGTGTGGGCTTT------AAAAGGCATCCT
*
3291977 ACTCTTTGAGGACTGAGAA-GTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGA
60 ACTCTTTGAGGACTGA-AAGGTGCCACCAACTCGTGTGGGCTTTAAAAGGCGTCCTACTCTTTGA
3292041 GGACT
124 GGACT
3292046 GGAAAATGCC
Statistics
Matches: 116, Mismatches: 11, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
149 42 0.36
155 72 0.62
156 2 0.02
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (149 bp):
TCCTGCTCTTTGAGGACTAGAAGGTGCCACAAACTCGTGTGGGCTTTAAAAGGCATCCTACTCTT
TGAGGACTGAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAGGCGTCCTACTCTTTGAGGACTAA
AGGGTGAAAGGAGAGAGCG
Found at i:3292104 original size:25 final size:25
Alignment explanation
Indices: 3292076--3292159 Score: 62
Period size: 25 Copynumber: 3.2 Consensus size: 25
3292066 GTGGGCTTTG
3292076 AAAGGCGTCCTGCTCTTTGAGGACT
1 AAAGGCGTCCTGCTCTTTGAGGACT
* ** * * *
3292101 AAAGGTG-CCACCAACTTATGTGGGCTTT
1 AAAGGCGTCCTGC-TCTT-TGAGGAC--T
3292129 AGAAGGCGTCCTGCTCTTTGAGGACT
1 A-AAGGCGTCCTGCTCTTTGAGGACT
3292155 AAAGG
1 AAAGG
3292160 GTGAAAGGAG
Statistics
Matches: 41, Mismatches: 12, Indels: 12
0.63 0.18 0.18
Matches are distributed among these distances:
24 3 0.07
25 13 0.32
26 7 0.17
28 7 0.17
29 8 0.20
30 3 0.07
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (25 bp):
AAAGGCGTCCTGCTCTTTGAGGACT
Found at i:3292147 original size:109 final size:112
Alignment explanation
Indices: 3291909--3292155 Score: 315
Period size: 109 Copynumber: 2.2 Consensus size: 112
3291899 AAAGGAGAGA
** * *
3291909 GCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGTTTTAAAAAGAAAAGGCAT
1 GCGTCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTCGTGTGGGCTTT----AGAAAAGGCAT
*
3291974 CCTACTCTTTGAGGACTGAGAAGTGCCACCAACTCGTGTGGGCTTTGAAAG
62 CCTACTCTTTGAGGACTGAGAAGTGCCACCAACTCATGTGGGCTTTGAAAG
* * * *
3292025 GCGTCCTACTCTTTGAGGACTGGAAAATGCCACCAACTCGTGTGGGCTTT-G-AAAGGCGTCCTG
1 GCGTCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTCGTGTGGGCTTTAGAAAAGGCATCCTA
*
3292088 CTCTTTGAGGACT-A-AAGGTGCCACCAACTTATGTGGGCTTT-AGAAG
66 CTCTTTGAGGACTGAGAA-GTGCCACCAACTCATGTGGGCTTTGA-AAG
3292134 GCGTCCTGCTCTTTGAGGACTA
1 GCGTCCTGCTCTTTGAGGACTA
3292156 AAGGGTGAAA
Statistics
Matches: 117, Mismatches: 12, Indels: 11
0.84 0.09 0.08
Matches are distributed among these distances:
108 3 0.03
109 46 0.39
110 23 0.20
111 1 0.01
116 44 0.38
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (112 bp):
GCGTCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTCGTGTGGGCTTTAGAAAAGGCATCCTA
CTCTTTGAGGACTGAGAAGTGCCACCAACTCATGTGGGCTTTGAAAG
Found at i:3292239 original size:94 final size:94
Alignment explanation
Indices: 3292079--3292322 Score: 420
Period size: 94 Copynumber: 2.6 Consensus size: 94
3292069 GGCTTTGAAA
*
3292079 GGCGTCCTGCTCTTTGAGGACTA--AAGGTGCCACCAACTTATGTGGGCTTTAGAAGGCGTCCTG
1 GGCGTCCTGCTCTTTGAGGACTAGGAA-GTGCCACCAACTTATGTGGGCTTTAAAAGGCGTCCTG
3292142 CTCTTTGAGGACTAAAGGGTGAAAGGAGAG
65 CTCTTTGAGGACTAAAGGGTGAAAGGAGAG
* * *
3292172 GGCGTTCTGCTCTTTGAGGAATAGGAAGTGCCACCAACTTATGTGGGCTTTAAAAGGTGTCCTGC
1 GGCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTATGTGGGCTTTAAAAGGCGTCCTGC
3292237 TCTTTGAGGACTAAAGGGTGAAAGGAGAG
66 TCTTTGAGGACTAAAGGGTGAAAGGAGAG
*
3292266 GGCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGG
1 GGCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTATGTGGGCTTTAAAAGG
3292323 AAAAGGCATC
Statistics
Matches: 142, Mismatches: 7, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
93 21 0.15
94 119 0.84
95 2 0.01
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.26
Consensus pattern (94 bp):
GGCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTATGTGGGCTTTAAAAGGCGTCCTGC
TCTTTGAGGACTAAAGGGTGAAAGGAGAG
Found at i:3292382 original size:61 final size:60
Alignment explanation
Indices: 3292270--3292414 Score: 177
Period size: 61 Copynumber: 2.4 Consensus size: 60
3292260 GGAGAGGGCG
* * *
3292270 TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCA
1 TCCTGCTCTTTGAGCACTA-GAAGTGCCACCAACTCGTGTGGGCTTTAAAAGAAAAAGGCA
* *
3292331 TCCTGCTCTTTGAGCACTA-AAGGTGCCACTAACTCGTGTGGG-TTCTGAAAAGAAAAAGGCG
1 TCCTGCTCTTTGAGCACTAGAA-GTGCCACCAACTCGTGTGGGCTT-T-AAAAGAAAAAGGCA
* *
3292392 TCCTGCTCTTTGAGGACTGGAAG
1 TCCTGCTCTTTGAGCACTAGAAG
3292415 GGCTAAAAGA
Statistics
Matches: 73, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
59 4 0.05
60 19 0.26
61 48 0.66
62 2 0.03
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (60 bp):
TCCTGCTCTTTGAGCACTAGAAGTGCCACCAACTCGTGTGGGCTTTAAAAGAAAAAGGCA
Found at i:3297667 original size:21 final size:21
Alignment explanation
Indices: 3297634--3297674 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
3297624 CTAAGTAAAA
3297634 ATACGTATTGTATCAATACAT
1 ATACGTATTGTATCAATACAT
*
3297655 ATAC-TATTGGTATTAATACA
1 ATACGTATT-GTATCAATACA
3297675 CAAGGTTGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.39, C:0.12, G:0.10, T:0.39
Consensus pattern (21 bp):
ATACGTATTGTATCAATACAT
Found at i:3297880 original size:10 final size:10
Alignment explanation
Indices: 3297861--3297891 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
3297851 AATCTCATTT
3297861 TCACTGTTCA
1 TCACTGTTCA
*
3297871 TCACTATTCA
1 TCACTGTTCA
3297881 TCACTGTTCA
1 TCACTGTTCA
3297891 T
1 T
3297892 GTATCGATAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.23, C:0.29, G:0.06, T:0.42
Consensus pattern (10 bp):
TCACTGTTCA
Found at i:3297965 original size:47 final size:47
Alignment explanation
Indices: 3297901--3297992 Score: 150
Period size: 47 Copynumber: 2.0 Consensus size: 47
3297891 TGTATCGATA
* *
3297901 CATCACTTTCATGTATCGTTAAAAATCACTGTTCA-CACTGTTCACG
1 CATCACTTTCATGTATCGTTAAAAATCACTATTCATCACTATTCACG
3297947 CATCACTATTCATGTATCGTTAAAAATCACTATTCATCACTATTCA
1 CATCACT-TTCATGTATCGTTAAAAATCACTATTCATCACTATTCA
3297993 TGTATCGATA
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
46 7 0.17
47 27 0.64
48 8 0.19
ACGTcount: A:0.32, C:0.25, G:0.08, T:0.36
Consensus pattern (47 bp):
CATCACTTTCATGTATCGTTAAAAATCACTATTCATCACTATTCACG
Found at i:3298011 original size:13 final size:13
Alignment explanation
Indices: 3297993--3298031 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
3297983 TCACTATTCA
3297993 TGTATCGATACAT
1 TGTATCGATACAT
*
3298006 TGTATCGATACAG
1 TGTATCGATACAT
3298019 TGTATCGATACAT
1 TGTATCGATACAT
3298032 CATAAATAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.31, C:0.15, G:0.18, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3299994 original size:28 final size:28
Alignment explanation
Indices: 3299954--3300060 Score: 108
Period size: 28 Copynumber: 3.9 Consensus size: 28
3299944 TTTTGGAGAT
*
3299954 AATAACAGGGTTGGAGTATCCCCTCAAA
1 AATAACAGGGTTGGAGTATCCCCGCAAA
** * *
3299982 AATAATGGGGTTGGAGTATCCTCGCGAA
1 AATAACAGGGTTGGAGTATCCCCGCAAA
* **
3300010 AATAACAAGGTTGGAGTATCCCCG-ATG
1 AATAACAGGGTTGGAGTATCCCCGCAAA
* * *
3300037 ATTAACGGGGTTGGAGTGTCCCCG
1 AATAACAGGGTTGGAGTATCCCCG
3300061 ATTGTGAAAA
Statistics
Matches: 63, Mismatches: 16, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
27 20 0.32
28 43 0.68
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (28 bp):
AATAACAGGGTTGGAGTATCCCCGCAAA
Found at i:3300161 original size:51 final size:51
Alignment explanation
Indices: 3300046--3300319 Score: 352
Period size: 51 Copynumber: 5.4 Consensus size: 51
3300036 GATTAACGGG
* * * *
3300046 GTTGGAGTGTCCCCGATTGTGAAAAATTGGTGTTTTTGGAAATAAAATCAGA
1 GTTGGAGTATCCCCGATTGTGGAAAATTGGTG-TTTTGAAAATAAAATCGGA
* * ** * * *
3300098 GTTGGAGTATCCCCGATTATAGAAAATTCATGTTTTAAAAATAAAACCGGG
1 GTTGGAGTATCCCCGATTGTGGAAAATTGGTGTTTTGAAAATAAAATCGGA
* *
3300149 GTTGGAGTATCCCTGATTGTGGAAAATTGGTGTTTCGAAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGGAAAATTGGTGTTTTGAAAATAAAATCGGA
*
3300200 GTTGGAGTATCCCCGATTGTGGAAAATTGGTGTTTCGAAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGGAAAATTGGTGTTTTGAAAATAAAATCGGA
* * * *
3300251 GTTGGAGTATCCCCGATTGTGGAAAATTAGTGTTTT-AGGAATAAAACCGGG
1 GTTGGAGTATCCCCGATTGTGGAAAATTGGTGTTTTGA-AAATAAAATCGGA
*
3300302 GTTGGAGTACCCCCGATT
1 GTTGGAGTATCCCCGATT
3300320 ATGAAAAAAA
Statistics
Matches: 194, Mismatches: 27, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
50 1 0.01
51 167 0.86
52 26 0.13
ACGTcount: A:0.31, C:0.12, G:0.26, T:0.30
Consensus pattern (51 bp):
GTTGGAGTATCCCCGATTGTGGAAAATTGGTGTTTTGAAAATAAAATCGGA
Found at i:3301345 original size:27 final size:27
Alignment explanation
Indices: 3301307--3301360 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
3301297 CTGAGATTTT
3301307 GCTATCTCCCCAAGGTTGGAAAACTAA
1 GCTATCTCCCCAAGGTTGGAAAACTAA
3301334 GCTATCTCCCCAAGGTTGGAAAACTAA
1 GCTATCTCCCCAAGGTTGGAAAACTAA
3301361 CTCATAAAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.33, C:0.26, G:0.19, T:0.22
Consensus pattern (27 bp):
GCTATCTCCCCAAGGTTGGAAAACTAA
Found at i:3302684 original size:20 final size:20
Alignment explanation
Indices: 3302658--3302713 Score: 78
Period size: 20 Copynumber: 2.8 Consensus size: 20
3302648 ATGTATCGAT
*
3302658 ACAATGTATCGATATAATG-
1 ACAATGTATCGATACAATGC
3302677 AGCAATGTATCGATACAATGC
1 A-CAATGTATCGATACAATGC
*
3302698 ACAATGTATTGATACA
1 ACAATGTATCGATACA
3302714 TCTGGGTAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
19 1 0.03
20 31 0.94
21 1 0.03
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.29
Consensus pattern (20 bp):
ACAATGTATCGATACAATGC
Found at i:3302695 original size:13 final size:13
Alignment explanation
Indices: 3302647--3302676 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
3302637 AAAATGCCTG
3302647 AATGTATCGATAC
1 AATGTATCGATAC
*
3302660 AATGTATCGATAT
1 AATGTATCGATAC
3302673 AATG
1 AATG
3302677 AGCAATGTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.40, C:0.10, G:0.17, T:0.33
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:3302770 original size:13 final size:13
Alignment explanation
Indices: 3302752--3302777 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3302742 ACAAAGATCG
3302752 ATGTATCGATACA
1 ATGTATCGATACA
3302765 ATGTATCGATACA
1 ATGTATCGATACA
3302778 TTTAATAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3304333 original size:100 final size:96
Alignment explanation
Indices: 3304220--3305100 Score: 642
Period size: 87 Copynumber: 9.4 Consensus size: 96
3304210 CGAAGAATGA
* * * * * *
3304220 CAATGTGCTGATTCATGGCTAGCGACT-TTAGACTTGAAGAAGAATGCCAATGTGCTGAGACAAG
1 CAATATGCTGATTCAAGGCCAGCGA-TATTGGACTTGAAGAAGAGTGCCAATGTGCTGATACAAG
* * *
3304284 GCCAACGACATTGGGCTTTAAAGATGATGAACGCGC
65 GCCAACGACATTGGAC-TTAAAGAT-A--AAGGTGC
* *
3304320 CAATATGCTGATTCAAGGCCAGCAATATTGGACTT--A-AAG-GTGCCAATGTGCTGATCCAAGG
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTGAAGAAGAGTGCCAATGTGCTGATACAAGG
* *
3304381 CCAGCGATATTGGACTTAAAGATAAAGGTGC
66 CCAACGACATTGGACTTAAAGATAAAGGTGC
* * * *
3304412 CACTATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGAGGTGCCGATGTGCTGATTC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTT---GAAGAAGA-GTGCCAATGTGCTGATAC
* *
3304477 AAGGCCAACTGACATCGGTCTTAAAGATAAAGGTGC
62 AAGGCCAAC-GACATTGGACTTAAAGATAAAGGTGC
* * * * *
3304513 CAATATGTTGATTCAAGGCTAGCGATACTAGG-CTT--------GTGTCAATGTGCTGATTCAAG
1 CAATATGCTGATTCAAGGCCAGCGATA-TTGGACTTGAAGAAGAGTGCCAATGTGCTGATACAAG
* * * *
3304569 GCTAGCGACATTGGTCTTAAAGA-CAAGGTGC
65 GCCAACGACATTGGACTTAAAGATAAAGGTGC
* * * * *
3304600 CAATATGCTGATTTAAGGCCAGCGATATTGGGCTT-------A-TGCTAATGTGCTAATTCAAGG
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTGAAGAAGAGTGCCAATGTGCTGATACAAGG
* * * *
3304657 CCAGCGAAATTGGTCTTAAAGA-CAAGGTGC
66 CCAACGACATTGGACTTAAAGATAAAGGTGC
* * * *
3304687 CAATATGCTGATTCAAGGCCAGCAATATTGGGCTT-------A-TGCTAATGTGCTGATTCAAGG
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTGAAGAAGAGTGCCAATGTGCTGATACAAGG
** * *
3304744 CCAGTGACATTGGTCTTAAAGACAAA-GTGC
66 CCAACGACATTGGACTTAAAGATAAAGGTGC
* * * *
3304774 CAATATGTTGATTTAAGGCCAGCGATATTGGGCTT-------A-TGCCAATGTGCTGATTCAAGG
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTGAAGAAGAGTGCCAATGTGCTGATACAAGG
* *
3304831 CCAACGACATTGGTCTTAAAGA-CAAGGTGC
66 CCAACGACATTGGACTTAAAGATAAAGGTGC
* * * ** * *
3304861 CAATATGCTGATTCAAGGCCAACGATATTGGCCTT-AATGATGAAGATGTTAATGTACTGATTCA
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTGAA-GAAG-AG-TGCCAATGTGCTGATACA
* * * *
3304925 AGGCCAGCGACATTGGTCTTAAAGATGAAGATGC
63 AGGCCAACGACATTGGACTTAAAGATAAAGGTGC
* * * * * * * *
3304959 CAATGTGTTGATTCAAGGCCAGTGACATTGGTCTTAAAGATAAAGGTGCCAATGTGCTGATTCAA
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTGAAGA-AGA-GTGCCAATGTGCTGATACAA
* * *
3305024 GGCCAGCGACATTGGTCTTAAAGATACAGGTGC
64 GGCCAACGACATTGGACTTAAAGATAAAGGTGC
*
3305057 CAATATGCTGATTCATGGCCAGCGATATTGGACTTAGAAGAAGA
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTT-GAAGAAGA
3305101 CGCCACTAAC
Statistics
Matches: 665, Mismatches: 86, Indels: 62
0.82 0.11 0.08
Matches are distributed among these distances:
86 5 0.01
87 266 0.40
88 18 0.03
89 23 0.03
92 38 0.06
94 1 0.00
95 9 0.01
96 31 0.05
97 42 0.06
98 119 0.18
99 8 0.01
100 52 0.08
101 50 0.08
102 3 0.00
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.26
Consensus pattern (96 bp):
CAATATGCTGATTCAAGGCCAGCGATATTGGACTTGAAGAAGAGTGCCAATGTGCTGATACAAGG
CCAACGACATTGGACTTAAAGATAAAGGTGC
Found at i:3304429 original size:49 final size:49
Alignment explanation
Indices: 3304264--3305097 Score: 609
Period size: 49 Copynumber: 17.9 Consensus size: 49
3304254 TGAAGAAGAA
* ** * * * *
3304264 TGCCAATGTGCTGAGACAAGGCCAACGACATTGGGCTTTAAAGATGATGAACG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTC-TTAAAGAT-A--AAGG
* * *
3304317 CGCCAATATGCTGATTCAAGGCCAGCAATATTGGAC-T-----TAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGATAAAGG
* * *
3304360 TGCCAATGTGCTGATCCAAGGCCAGCGATATTGGACTTAAAGATAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGATAAAGG
* *
3304409 TGCCACTATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGAT-AA-AGG
* * * * *
3304460 TGCCGATGTGCTGATTCAAGGCCAACTGACATCGGTCTTAAAGATAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGC-GATATTGGTCTTAAAGATAAAGG
* * *
3304510 TGCCAATATGTTGATTCAAGGCTAGCGATACTAGG-CTT---G-T----G
1 TGCCAATATGCTGATTCAAGGCCAGCGATA-TTGGTCTTAAAGATAAAGG
* * * *
3304551 T--CAATGTGCTGATTCAAGGCTAGCGACATTGGTCTTAAAGA-CAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGATAAAGG
* *
3304597 TGCCAATATGCTGATTTAAGGCCAGCGATATTGGGC-T-----T--A--
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGATAAAGG
* * * * *
3304636 TGCTAATGTGCTAATTCAAGGCCAGCGAAATTGGTCTTAAAGA-CAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGATAAAGG
* *
3304684 TGCCAATATGCTGATTCAAGGCCAGCAATATTGGGC-T-----T--A--
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGATAAAGG
* * * * *
3304723 TGCTAATGTGCTGATTCAAGGCCAGTGACATTGGTCTTAAAGACAAA-G
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGATAAAGG
* * *
3304771 TGCCAATATGTTGATTTAAGGCCAGCGATATTGGGC-T-----T--A--
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGATAAAGG
* * * *
3304810 TGCCAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGA-CAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGATAAAGG
* * * * *
3304858 TGCCAATATGCTGATTCAAGGCCAACGATATTGGCCTTAATGATGAAGA
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGATAAAGG
** * * * * *
3304907 TGTTAATGTACTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGAAGA
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGATAAAGG
* * * *
3304956 TGCCAATGTGTTGATTCAAGGCCAGTGACATTGGTCTTAAAGATAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGATAAAGG
* * *
3305005 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATACAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGATAAAGG
* *
3305054 TGCCAATATGCTGATTCATGGCCAGCGATATTGGACTTAGAAGA
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTA-AAGA
3305098 AGACGCCACT
Statistics
Matches: 627, Mismatches: 100, Indels: 111
0.75 0.12 0.13
Matches are distributed among these distances:
38 3 0.00
39 117 0.19
40 4 0.01
41 4 0.01
42 1 0.00
43 35 0.06
44 1 0.00
45 2 0.00
46 6 0.01
47 4 0.01
48 126 0.20
49 220 0.35
50 33 0.05
51 28 0.04
52 15 0.02
53 28 0.04
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (49 bp):
TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGATAAAGG
Found at i:3304618 original size:87 final size:87
Alignment explanation
Indices: 3304465--3305092 Score: 727
Period size: 87 Copynumber: 6.9 Consensus size: 87
3304455 AGAGGTGCCG
* * * *
3304465 ATGTGCTGATTCAAGGCCAACTGACATCGGTCTTAAAGATAAAGGTGCCAATATGTTGATTCAAG
1 ATGTGCTGATTCAAGGCCAGC-GACATTGGTCTTAAAGA-CAAGGTGCCAATATGCTGATTCAAG
* * * *
3304530 GCTAGCGATACTAGGCTTGTG-TCA
64 GCCAGCGATATTGGGCTTATGCT-A
* *
3304554 ATGTGCTGATTCAAGGCTAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTTAAGGC
1 ATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCAAGGC
3304619 CAGCGATATTGGGCTTATGCTA
66 CAGCGATATTGGGCTTATGCTA
* *
3304641 ATGTGCTAATTCAAGGCCAGCGAAATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCAAGGC
1 ATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCAAGGC
*
3304706 CAGCAATATTGGGCTTATGCTA
66 CAGCGATATTGGGCTTATGCTA
* * * *
3304728 ATGTGCTGATTCAAGGCCAGTGACATTGGTCTTAAAGACAAAGTGCCAATATGTTGATTTAAGGC
1 ATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCAAGGC
*
3304793 CAGCGATATTGGGCTTATGCCA
66 CAGCGATATTGGGCTTATGCTA
*
3304815 ATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCAAGGC
1 ATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCAAGGC
* * *
3304880 CAACGATATTGGCCTTAATGATGAA
66 CAGCGATATTGGGCTT-ATGCT--A
* * * *
3304905 GATGTTAATGTACTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGAAGATGCCAATGTGTTGA
1 -ATG----TG--CTGATTCAAGGCCAGCGACATTGGTCTTAAAGA-CAAGGTGCCAATATGCTGA
* * * *
3304970 TTCAAGGCCAGTGACATTGGTCTTAAAGATAAAGGTGCCA
58 TTCAAGGCCAGCGATATTGGGC-T-----T--A--TGCTA
* *
3305010 ATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATACAGGTGCCAATATGCTGATTCATGG
1 ATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACA-AGGTGCCAATATGCTGATTCAAGG
*
3305075 CCAGCGATATTGGACTTA
65 CCAGCGATATTGGGCTTA
3305093 GAAGAAGACG
Statistics
Matches: 466, Mismatches: 51, Indels: 43
0.83 0.09 0.08
Matches are distributed among these distances:
87 275 0.59
88 20 0.04
89 19 0.04
90 2 0.00
91 3 0.01
92 1 0.00
95 2 0.00
97 34 0.07
98 98 0.21
99 1 0.00
100 2 0.00
104 4 0.01
105 3 0.01
107 2 0.00
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.28
Consensus pattern (87 bp):
ATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCAAGGC
CAGCGATATTGGGCTTATGCTA
Found at i:3304669 original size:39 final size:39
Alignment explanation
Indices: 3304605--3304848 Score: 148
Period size: 39 Copynumber: 5.8 Consensus size: 39
3304595 GGTGCCAATA
* *
3304605 TGCTGATTTAAGGCCAGCGATATTGGGCTTATGCTAATG
1 TGCTGATTCAAGGCCAGCGAAATTGGGCTTATGCTAATG
* * * *
3304644 TGCTAATTCAAGGCCAGCGAAATTGGTCTTAAAGACAAGGTGCCAATA
1 TGCTGATTCAAGGCCAGCGAAATTGGGCTT-------A--TGCTAATG
3304692 TGCTGATTCAAGGCCAGC-AATATTGGGCTTATGCTAATG
1 TGCTGATTCAAGGCCAGCGAA-ATTGGGCTTATGCTAATG
* * * * *
3304731 TGCTGATTCAAGGCCAGTGACATTGGTCTTAAAGACAAAGTGCCAATA
1 TGCTGATTCAAGGCCAGCGAAATTGGGCTT--------A-TGCTAATG
* * * *
3304779 TGTTGATTTAAGGCCAGCGATATTGGGCTTATGCCAATG
1 TGCTGATTCAAGGCCAGCGAAATTGGGCTTATGCTAATG
* * *
3304818 TGCTGATTCAAGGCCAACGACATTGGTCTTA
1 TGCTGATTCAAGGCCAGCGAAATTGGGCTTA
3304849 AAGACAAGGT
Statistics
Matches: 159, Mismatches: 26, Indels: 40
0.71 0.12 0.18
Matches are distributed among these distances:
39 90 0.57
40 2 0.01
41 1 0.01
46 1 0.01
47 3 0.02
48 62 0.39
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (39 bp):
TGCTGATTCAAGGCCAGCGAAATTGGGCTTATGCTAATG
Found at i:3305172 original size:28 final size:30
Alignment explanation
Indices: 3305102--3305208 Score: 123
Period size: 29 Copynumber: 3.6 Consensus size: 30
3305092 AGAAGAAGAC
3305102 GCCACTAACTTGTGTGGGCTTTTGAAAGGGTT
1 GCCACTAAC-T-TGTGGGCTTTTGAAAGGGTT
* *
3305134 G-CACCAACTTGTGTGCTTTTG-AA-GGTT
1 GCCACTAACTTGTGGGCTTTTGAAAGGGTT
* *
3305161 GCCACTGACTTGTGGGC-TTTGAAAGGGGT
1 GCCACTAACTTGTGGGCTTTTGAAAGGGTT
*
3305190 GCCACTGACTTGTGGGCTT
1 GCCACTAACTTGTGGGCTT
3305209 AAAAGGAAAA
Statistics
Matches: 65, Mismatches: 6, Indels: 10
0.80 0.07 0.12
Matches are distributed among these distances:
27 9 0.14
28 16 0.25
29 31 0.48
30 2 0.03
31 6 0.09
32 1 0.02
ACGTcount: A:0.17, C:0.19, G:0.32, T:0.33
Consensus pattern (30 bp):
GCCACTAACTTGTGGGCTTTTGAAAGGGTT
Found at i:3305243 original size:33 final size:31
Alignment explanation
Indices: 3305188--3305608 Score: 301
Period size: 27 Copynumber: 13.7 Consensus size: 31
3305178 TTTGAAAGGG
* * *
3305188 GTGCCACTGACTTGTGGGCTTAAAAGGAAAAA
1 GTGCCACGGAGTTGTGGACTTAAAAGG-AAAA
* *
3305220 GATGCCACGGAATTATGGACTTAAAAGG----
1 G-TGCCACGGAGTTGTGGACTTAAAAGGAAAA
* *
3305248 GTGCCACGGAGTTATGGATTTAAAAGG----
1 GTGCCACGGAGTTGTGGACTTAAAAGGAAAA
* *
3305275 GTGCCACTGAGTTGTGGACTTAAAGGGAAAAAGA
1 GTGCCACGGAGTTGTGGACTTAAAAGG--AAA-A
* * *
3305309 GTGCCACGAAGTTTTGGGCTTAAAAGG----
1 GTGCCACGGAGTTGTGGACTTAAAAGGAAAA
* *
3305336 GTGCCACGGAGTCGTGGACTTAAAAAGAAAA
1 GTGCCACGGAGTTGTGGACTTAAAAGGAAAA
*
3305367 GGTGGCACGGAGTTGTGGACTTAAAAGGAACAA
1 -GTGCCACGGAGTTGTGGACTTAAAAGGAA-AA
*
3305400 GGTGCCACGTAGTTGTGGACTTAAAAGG----
1 -GTGCCACGGAGTTGTGGACTTAAAAGGAAAA
* *
3305428 GTGCCACGGA-TTGTGGATTTTAAAGG----
1 GTGCCACGGAGTTGTGGACTTAAAAGGAAAA
* *
3305454 GTGCCACGGAGTCGTGGACTTAAAAAGAAAA
1 GTGCCACGGAGTTGTGGACTTAAAAGGAAAA
*
3305485 GGTGCCACGGAGTTGTAGG-CTTTAAAAAGAAAAA
1 -GTGCCACGGAGTTGT-GGAC-TT-AAAAGGAAAA
3305519 GGTGCCACGGAGTTGTGGACTTAAAAAGGAAAAGA
1 -GTGCCACGGAGTTGTGGACTT-AAAAGG-AAA-A
* * *
3305554 GTGCCACAGAGTTGCGGGCTTAAAAGGAAAAA
1 GTGCCACGGAGTTGTGGACTTAAAAGG-AAAA
3305586 GATTGCCACGGAGTTGTGGACTT
1 G--TGCCACGGAGTTGTGGACTT
3305609 TGGAAAGGGA
Statistics
Matches: 319, Mismatches: 42, Indels: 54
0.77 0.10 0.13
Matches are distributed among these distances:
26 24 0.08
27 90 0.28
28 1 0.00
32 44 0.14
33 74 0.23
34 85 0.27
35 1 0.00
ACGTcount: A:0.33, C:0.14, G:0.32, T:0.21
Consensus pattern (31 bp):
GTGCCACGGAGTTGTGGACTTAAAAGGAAAA
Found at i:3305313 original size:34 final size:33
Alignment explanation
Indices: 3305269--3305772 Score: 284
Period size: 34 Copynumber: 15.8 Consensus size: 33
3305259 TTATGGATTT
* * **
3305269 AAAAGGGTGCCACTGAGTTGTGGACTTAAAGGG
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAAAG
* * *
3305302 AAAAAGAGTGCCACGAAGTTTTGGGCTT-AAAAG
1 -AAAAGAGTGCCACGGAGTTGTGGACTTAAAAAG
*
3305335 ----G-GTGCCACGGAGTCGTGGACTTAAAAAG
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAAAG
* *
3305363 AAAAG-GTGGCACGGAGTTGTGGACTTAAAAGG
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAAAG
*
3305395 AACAAG-GTGCCACGTAGTTGTGGACTT-AAAAG
1 AA-AAGAGTGCCACGGAGTTGTGGACTTAAAAAG
**
3305427 ----G-GTGCCACGGA-TTGTGGA-TTTTAAAG
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAAAG
*
3305453 ----G-GTGCCACGGAGTCGTGGACTTAAAAAG
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAAAG
3305481 AAAAG-GTGCCACGGAGTTGTAGG-CTTTAAAAAG
1 AAAAGAGTGCCACGGAGTTGT-GGAC-TTAAAAAG
3305514 AAAA-AGGTGCCACGGAGTTGTGGACTTAAAAAGG
1 AAAAGA-GTGCCACGGAGTTGTGGACTTAAAAA-G
* * * *
3305548 AAAAGAGTGCCACAGAGTTGCGGGCTTAAAAGG
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAAAG
* **
3305581 AAAAAGATTGCCACGGAGTTGTGGACTTTGGAAAGGG
1 -AAAAGAGTGCCACGGAGTTGTGGAC-TT--AAAAAG
* * *
3305618 AAAAGA-TGCCACTGAATCGTGGACTTTGAAGAAA-
1 AAAAGAGTGCCACGGAGTTGTGGAC-TT-AA-AAAG
* * *
3305652 AAAATA-TGCCACTGAGTCGTGGACTTTGAAGAAA-
1 AAAAGAGTGCCACGGAGTTGTGGAC-TT-AA-AAAG
* * **
3305686 AAAAGA-TGCCACTGAGTCGTGGACTT-TGAAG
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAAAG
* * **
3305717 -AGAGA-TGCCACTGAGTTGTGGACTT-TGAAG
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAAAG
* * *
3305747 AAAAGA-TTCCACTGAGTCGTGGACTT
1 AAAAGAGTGCCACGGAGTTGTGGACTT
3305773 TGAGAAGAGA
Statistics
Matches: 396, Mismatches: 47, Indels: 57
0.79 0.09 0.11
Matches are distributed among these distances:
25 2 0.01
26 22 0.06
27 33 0.08
28 12 0.03
30 30 0.08
31 22 0.06
32 47 0.12
33 51 0.13
34 144 0.36
35 22 0.06
36 6 0.02
37 5 0.01
ACGTcount: A:0.34, C:0.14, G:0.31, T:0.21
Consensus pattern (33 bp):
AAAAGAGTGCCACGGAGTTGTGGACTTAAAAAG
Found at i:3305451 original size:153 final size:148
Alignment explanation
Indices: 3305207--3305580 Score: 351
Period size: 153 Copynumber: 2.5 Consensus size: 148
3305197 ACTTGTGGGC
* * * * *
3305207 TTAAAAGGAAAAAGATGCCACGGAATTATGGACTT-AAAA-G----GGTGCCACGGAGTTATGGA
1 TTAAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTAAAAAGGAAAAGGTGCCAC-GAGTTGTGGA
* * ** *
3305266 TTTAAAAGGGTGCCACTGAGTTGTGGACTTAAAGGGAAAAAGAGTGCCACGAAGTTTTGGGCTT-
65 CTTAAAAGGGTGCCACGGAGTTGTGGACTTAAA--G-----G-GTGCCACGAAGTCGTGGACTTA
3305330 AAAAG-GGTGCCACGGAGTCGT-GGAC-
122 AAAAGAGGTGCCACGGAGTCGTAGG-CT
*
3305355 TTAAAAAG-AAAAGGTGGCACGGAGTTGTGGACTT-AAAAGGAACAAGGTGCCACGTAGTTGTGG
1 TTAAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTAAAAAGGAA-AAGGTGCCACG-AGTTGTGG
* *
3305418 ACTTAAAAGGGTGCCACGGA-TTGTGGATTTTAAAGGGTGCCACGGAGTCGTGGACTTAAAAAGA
64 ACTTAAAAGGGTGCCACGGAGTTGTGGA-CTTAAAGGGTGCCACGAAGTCGTGGACTTAAAAAG-
*
3305482 AAAGGTGCCACGGAGTTGTAGGCT
127 --AGGTGCCACGGAGTCGTAGGCT
*
3305506 TTAAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTAAAAAGGAAAAGAGTGCCACAGAGTTGCGG
1 TTAAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTAAAAAGGAAAAG-GTGCCAC-GAGTTGTGG
*
3305571 GCTTAAAAGG
64 ACTTAAAAGG
3305581 AAAAAGATTG
Statistics
Matches: 190, Mismatches: 17, Indels: 33
0.79 0.07 0.14
Matches are distributed among these distances:
145 17 0.09
146 6 0.03
147 26 0.14
148 8 0.04
150 16 0.08
151 11 0.06
152 36 0.19
153 69 0.36
154 1 0.01
ACGTcount: A:0.34, C:0.13, G:0.32, T:0.21
Consensus pattern (148 bp):
TTAAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTAAAAAGGAAAAGGTGCCACGAGTTGTGGAC
TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAGGGTGCCACGAAGTCGTGGACTTAAAAAGAGGT
GCCACGGAGTCGTAGGCT
Found at i:3305466 original size:118 final size:119
Alignment explanation
Indices: 3305331--3305544 Score: 369
Period size: 118 Copynumber: 1.8 Consensus size: 119
3305321 TTTGGGCTTA
* *
3305331 AAAGGGTGCCACGGAGTCGTGGACTTAAAAAGAAAAGGTGGCACGGAGTTGT-GGAC-TTAAAAG
1 AAAGGGTGCCACGGAGTCGTGGACTTAAAAAGAAAAGGTGCCACGGAGTTGTAGG-CTTTAAAAA
* *
3305394 GAACAAGGTGCCACGTAGTTGTGGACTTAAAAGGGTGCCACGGATTGTGGATTTT
65 GAAAAAGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGATTGTGGATTTT
3305449 AAAGGGTGCCACGGAGTCGTGGACTTAAAAAGAAAAGGTGCCACGGAGTTGTAGGCTTTAAAAAG
1 AAAGGGTGCCACGGAGTCGTGGACTTAAAAAGAAAAGGTGCCACGGAGTTGTAGGCTTTAAAAAG
3305514 AAAAAGGTGCCACGGAGTTGTGGACTTAAAA
66 AAAAAGGTGCCACGGAGTTGTGGACTTAAAA
3305545 AGGAAAAGAG
Statistics
Matches: 90, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
118 52 0.58
119 38 0.42
ACGTcount: A:0.33, C:0.14, G:0.33, T:0.21
Consensus pattern (119 bp):
AAAGGGTGCCACGGAGTCGTGGACTTAAAAAGAAAAGGTGCCACGGAGTTGTAGGCTTTAAAAAG
AAAAAGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGATTGTGGATTTT
Found at i:3305662 original size:103 final size:98
Alignment explanation
Indices: 3305555--3305750 Score: 223
Period size: 103 Copynumber: 1.9 Consensus size: 98
3305545 AGGAAAAGAG
* * * *
3305555 TGCCACAGAGTTGCGGGCTTAAAAG-GAAAAAGATTGCCACGGAGTTGTGGACTTTGGAAAGGGA
1 TGCCACAGAGTCGCGGACTTAAAAGAAAAAAAGA-TGCCACGGAGTCGTGGACTTT-G-AA--G-
3305619 AAAGATGCCACTGAATCGTGGACTTTGAAGAAAAAAATA
60 AAAGATGCCACTGAATCGTGGACTTTGAAGAAAAAAATA
* * ** * *
3305658 TGCCACTGAGTCGTGGACTTTGAAGAAAAAAAGATGCCACTGAGTCGTGGACTTTGAAGAGAGAT
1 TGCCACAGAGTCGCGGACTTAAAAGAAAAAAAGATGCCACGGAGTCGTGGACTTTGAAGAAAGAT
* *
3305723 GCCACTGAGTTGTGGACTTTGAAGAAAA
66 GCCACTGAATCGTGGACTTTGAAGAAAA
3305751 GATTCCACTG
Statistics
Matches: 80, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
98 31 0.39
99 1 0.01
101 2 0.03
102 1 0.01
103 38 0.47
104 7 0.09
ACGTcount: A:0.35, C:0.14, G:0.29, T:0.22
Consensus pattern (98 bp):
TGCCACAGAGTCGCGGACTTAAAAGAAAAAAAGATGCCACGGAGTCGTGGACTTTGAAGAAAGAT
GCCACTGAATCGTGGACTTTGAAGAAAAAAATA
Found at i:3305782 original size:61 final size:61
Alignment explanation
Indices: 3305589--3305782 Score: 219
Period size: 61 Copynumber: 3.0 Consensus size: 61
3305579 GGAAAAAGAT
* *
3305589 TGCCACGGAGTTGTGGACTTTGGAAAGGGAAAAGATGCCACTGAATCGTGGACTTTGAAGAAAAA
1 TGCCACTGAGTTGTGGACTTT-G-AA--GAAAAGATGCCACTGAGTCGTGGACTTTG-AG---AA
* *
3305654 AATA
58 GAGA
*
3305658 TGCCACTGAGTCGTGGACTTTGAAGAAAAAAAGATGCCACTGAGTCGTGGACTTTGA-AGAGAGA
1 TGCCACTGAGTTGTGGACTTTGAAG---AAAAGATGCCACTGAGTCGTGGACTTTGAGA-AGAGA
*
3305722 TGCCACTGAGTTGTGGACTTTGAAGAAAAGATTCCACTGAGTCGTGGACTTTGAGAAGAGA
1 TGCCACTGAGTTGTGGACTTTGAAGAAAAGATGCCACTGAGTCGTGGACTTTGAGAAGAGA
3305783 GATTTGAAGA
Statistics
Matches: 113, Mismatches: 7, Indels: 18
0.82 0.05 0.13
Matches are distributed among these distances:
61 33 0.29
62 1 0.01
63 1 0.01
64 27 0.24
65 1 0.01
67 3 0.03
68 28 0.25
69 19 0.17
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.23
Consensus pattern (61 bp):
TGCCACTGAGTTGTGGACTTTGAAGAAAAGATGCCACTGAGTCGTGGACTTTGAGAAGAGA
Found at i:3307122 original size:14 final size:12
Alignment explanation
Indices: 3307079--3307116 Score: 51
Period size: 13 Copynumber: 3.1 Consensus size: 12
3307069 GCCTTTGCAC
3307079 TTTTTTTGTGTGT
1 TTTTTTTGTGT-T
3307092 TTTTTTTGT-TT
1 TTTTTTTGTGTT
3307103 TGTTTTTTGTGTT
1 T-TTTTTTGTGTT
3307116 T
1 T
3307117 ACTTTTGACT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
11 2 0.09
12 9 0.39
13 12 0.52
ACGTcount: A:0.00, C:0.00, G:0.18, T:0.82
Consensus pattern (12 bp):
TTTTTTTGTGTT
Found at i:3314092 original size:20 final size:22
Alignment explanation
Indices: 3314038--3314092 Score: 73
Period size: 20 Copynumber: 2.7 Consensus size: 22
3314028 AAATTCTCAG
3314038 ATGTATCGATACA--AAGATCA
1 ATGTATCGATACATTAAGATCA
*
3314058 ATGTATCGCTACATTAAG-T-A
1 ATGTATCGATACATTAAGATCA
3314078 ATGTATCGATACATT
1 ATGTATCGATACATT
3314093 TCCTTGGCAG
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
20 27 0.87
21 1 0.03
22 3 0.10
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.33
Consensus pattern (22 bp):
ATGTATCGATACATTAAGATCA
Found at i:3314132 original size:13 final size:13
Alignment explanation
Indices: 3314114--3314165 Score: 50
Period size: 13 Copynumber: 3.5 Consensus size: 13
3314104 AGCTTCGTAG
3314114 CGATACATTGTAT
1 CGATACATTGTAT
3314127 CGATACAACAGTTATGTAT
1 CGAT---ACA-TT--GTAT
3314146 CGATACATTGTAT
1 CGATACATTGTAT
3314159 CGATACA
1 CGATACA
3314166 ACACTTATGT
Statistics
Matches: 33, Mismatches: 0, Indels: 12
0.73 0.00 0.27
Matches are distributed among these distances:
13 15 0.45
15 2 0.06
16 6 0.18
17 2 0.06
19 8 0.24
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (13 bp):
CGATACATTGTAT
Found at i:3314146 original size:19 final size:18
Alignment explanation
Indices: 3314122--3314220 Score: 84
Period size: 19 Copynumber: 5.6 Consensus size: 18
3314112 AGCGATACAT
3314122 TGTATCGATACAACAGTTA
1 TGTATCGATACAACA-TTA
3314141 TGTATCGAT---ACA-T-
1 TGTATCGATACAACATTA
3314154 TGTATCGATACAACACTTA
1 TGTATCGATACAACA-TTA
** *
3314173 TGTATCGATAGTTACTACT-
1 TGTATCGATA-CAAC-ATTA
3314192 TGTATCGATACAACACTTA
1 TGTATCGATACAACA-TTA
3314211 TGTATCGATA
1 TGTATCGATA
3314221 TAGTTACTGC
Statistics
Matches: 64, Mismatches: 6, Indels: 20
0.71 0.07 0.22
Matches are distributed among these distances:
13 9 0.14
14 1 0.02
16 6 0.09
17 1 0.02
18 4 0.06
19 39 0.61
20 3 0.05
21 1 0.02
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.35
Consensus pattern (18 bp):
TGTATCGATACAACATTA
Found at i:3314155 original size:32 final size:32
Alignment explanation
Indices: 3314114--3314220 Score: 151
Period size: 32 Copynumber: 3.2 Consensus size: 32
3314104 AGCTTCGTAG
*
3314114 CGATACATTGTATCGATACAACAGTTATGTAT
1 CGATACATTGTATCGATACAACACTTATGTAT
3314146 CGATACATTGTATCGATACAACACTTATGTAT
1 CGATACATTGTATCGATACAACACTTATGTAT
3314178 CGATAGTTACTACTTGTATCGATACAACACTTATGTAT
1 CG--A--TAC-A-TTGTATCGATACAACACTTATGTAT
3314216 CGATA
1 CGATA
3314221 TAGTTACTGC
Statistics
Matches: 68, Mismatches: 1, Indels: 10
0.86 0.01 0.13
Matches are distributed among these distances:
32 33 0.49
34 3 0.04
36 4 0.06
37 1 0.01
38 27 0.40
ACGTcount: A:0.34, C:0.18, G:0.14, T:0.35
Consensus pattern (32 bp):
CGATACATTGTATCGATACAACACTTATGTAT
Found at i:3314235 original size:40 final size:38
Alignment explanation
Indices: 3314121--3314244 Score: 161
Period size: 38 Copynumber: 3.4 Consensus size: 38
3314111 TAGCGATACA
*
3314121 TTGTATCGATACAACAGTTATGTATCG--A--TAC-A-
1 TTGTATCGATACAACACTTATGTATCGATAGTTACTAC
3314153 TTGTATCGATACAACACTTATGTATCGATAGTTACTAC
1 TTGTATCGATACAACACTTATGTATCGATAGTTACTAC
*
3314191 TTGTATCGATACAACACTTATGTATCGATATAGTTACTGC
1 TTGTATCGATACAACACTTATGTATCG--ATAGTTACTAC
*
3314231 TTGTATCAATACAA
1 TTGTATCGATACAA
3314245 ATTGTTGAAA
Statistics
Matches: 81, Mismatches: 3, Indels: 8
0.88 0.03 0.09
Matches are distributed among these distances:
32 26 0.32
34 1 0.01
36 3 0.04
37 1 0.01
38 27 0.33
40 23 0.28
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (38 bp):
TTGTATCGATACAACACTTATGTATCGATAGTTACTAC
Found at i:3320982 original size:130 final size:130
Alignment explanation
Indices: 3320715--3321078 Score: 527
Period size: 130 Copynumber: 2.8 Consensus size: 130
3320705 CATTTTTTTA
* * * *
3320715 TCTTTTATATTCTTA-TGAGTATCCGTAGGGGTATAAAATATTTC-AAAAACTTTTTATCTCTTT
1 TCTTTTATATTCCTATTG-GTATCCGTAGGGGTATAAAAGATTTCAAAAAACTTTTCATATCTTT
* * *
3320778 TCGGGTATCCATTAGGGTACGAAATTATTTTTTTC-AAATATAAATAAATATTAATTATTTTCAA
65 TCGGGTATCCATTAAGGTACGAAATGATTTTTTTCGAAATATAAATAAATATCAATTATTTTCAA
3320842 G
130 G
* **
3320843 TCTTTTATATTCCTATTGGTATCCGTAGGGGAATAAAAGATTTCAAAAAACAATTCATATCTTTT
1 TCTTTTATATTCCTATTGGTATCCGTAGGGGTATAAAAGATTTCAAAAAACTTTTCATATCTTTT
* *
3320908 TGGGTATCCATTAAGGTACAAAATGATTTTTTTCGAAATATAAATAAATATCAATTATTTTCAAG
66 CGGGTATCCATTAAGGTACGAAATGATTTTTTTCGAAATATAAATAAATATCAATTATTTTCAAG
* * * *
3320973 TCTTTTATATTCCTATGGGTTTCCGTAGGGGTATAAAAGATTTTGAAAAAACTTTTCGTATCTTT
1 TCTTTTATATTCCTATTGGTATCCGTAGGGGTATAAAAGA-TTTCAAAAAACTTTTCATATCTTT
* *
3321038 TCGGGTATCCATTAAGGTACGAAATGATTTCTTTAGAAATA
65 TCGGGTATCCATTAAGGTACGAAATGATTTTTTTCGAAATA
3321079 ATTAAATTAA
Statistics
Matches: 209, Mismatches: 23, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
128 38 0.18
129 48 0.23
130 66 0.32
131 57 0.27
ACGTcount: A:0.33, C:0.12, G:0.14, T:0.41
Consensus pattern (130 bp):
TCTTTTATATTCCTATTGGTATCCGTAGGGGTATAAAAGATTTCAAAAAACTTTTCATATCTTTT
CGGGTATCCATTAAGGTACGAAATGATTTTTTTCGAAATATAAATAAATATCAATTATTTTCAAG
Found at i:3322087 original size:124 final size:126
Alignment explanation
Indices: 3321924--3322165 Score: 362
Period size: 124 Copynumber: 1.9 Consensus size: 126
3321914 TTTTATGCCG
3321924 AGGTAGATATTTAGGATAGATTCATCCTTTTTAAAATCCTTTTTAAGTCCTTTA-GGGTACCGAG
1 AGGTAGATATTTAGGATAGATTCATCCTTTTTAAAATCCTTTTTAAGTCCTTTAGGGGTACCGAG
* * * * * *
3321988 ATATTTTCAAGTCGAAGGTAT-CCCTTAGGGGTATTTTTGTAATTTTTTAGAATCAGCCAA
66 ATACTTTCAAGTCGAAGGTATACCCATAGAGGCATTTTCGTAAGTTTTTAGAATCAGCCAA
* * * *
3322048 AGGTAGATATTTAGGATAGGTTCATCCTTTTTAAAATCCTTTTTAAGTCTTTTAGGGGTATCGGG
1 AGGTAGATATTTAGGATAGATTCATCCTTTTTAAAATCCTTTTTAAGTCCTTTAGGGGTACCGAG
* *
3322113 ATACTTTCACGTTGAAGGTATACCCATAGAGGCATTTTCGTAAGTTTTTAGAA
66 ATACTTTCAAGTCGAAGGTATACCCATAGAGGCATTTTCGTAAGTTTTTAGAA
3322166 CCGAGTCCTA
Statistics
Matches: 104, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
124 52 0.50
125 26 0.25
126 26 0.25
ACGTcount: A:0.28, C:0.13, G:0.20, T:0.39
Consensus pattern (126 bp):
AGGTAGATATTTAGGATAGATTCATCCTTTTTAAAATCCTTTTTAAGTCCTTTAGGGGTACCGAG
ATACTTTCAAGTCGAAGGTATACCCATAGAGGCATTTTCGTAAGTTTTTAGAATCAGCCAA
Found at i:3322313 original size:281 final size:279
Alignment explanation
Indices: 3321777--3322315 Score: 651
Period size: 281 Copynumber: 1.9 Consensus size: 279
3321767 GAAGGTGGGC
* *
3321777 ATTTAGGATAGGTTCATTCCTTTTATAGTCATTTTTAAGTCCTTTAGGGGTACTGAGATACTTTC
1 ATTTAGGATAGGTTCATTCCTTTTAAAATCATTTTTAAGTCCTTTAGGGGTACTGAGATACTTTC
* * * * *
3321842 ATGTCAAAGCTACCCCCTAAGGGCATTTTCATAATTTTTTAGAGCCGAGTCCTAAGTTATCACCG
66 ACGTCAAAGCTAACCCATAAGGGCATTTTCATAAGTTTTTAGAACCGAGTCCTAAGTTATCACCG
** *
3321907 AGTTCGCTTTTATGCCGAGGTAGATATTTAGGATAGATTCATCCTTTTTAAAATCCTTTTTAAGT
131 AGTTCGCTTTTATGCCGAGGTAGATATTTAGGATAGATTCATCCCATTTAAAATCATTTTTAAGT
* * * *
3321972 CCTTTAGGGTACCGAGATATTTTCAAGTCGAAGGTATCCCTTAGGGGTATTTTTGTAATTTTTTA
196 CCTTTAGGGTACCGAGATATTTTCAAGCCGAAGGTATCCCTTAGAGGCATTTTCGTAATTTTTTA
3322037 GAATCAGCCAAAGGTAGAT
261 GAATCAGCCAAAGGTAGAT
* * *
3322056 ATTTAGGATAGGTTCA-TCCTTTTTAAAATCCTTTTTAAGTCTTTTAGGGGTA-TCGGGATACTT
1 ATTTAGGATAGGTTCATTCC-TTTTAAAATCATTTTTAAGTCCTTTAGGGGTACT-GAGATACTT
** * * *
3322119 TCACGTTGAAGGTATACCCAT-AGAGGCATTTTCGTAAGTTTTTAGAACCGAGTCCT-AGATTGT
64 TCACGTCAAAGCTA-ACCCATAAG-GGCATTTTCATAAGTTTTTAGAACCGAGTCCTAAG-TTAT
** * * * * * *
3322182 CATTG-GGTCTGCTTTTATGCCGAAGGTGGGTATTTAGGATAGGTTCATCCCATTTATAGTCATT
126 CACCGAGTTC-GCTTTTATGCCG-AGGTAGATATTTAGGATAGATTCATCCCATTTAAAATCATT
* * *
3322246 TTTAAGTCCTTTATGGGTATCGAG-TACTTTT-ACGCCGAAGGTATCTCTTAGAGGCATTTTCGT
189 TTTAAGTCCTTTA-GGGTACCGAGATA-TTTTCAAGCCGAAGGTATCCCTTAGAGGCATTTTCGT
3322309 AATTTTT
252 AATTTTT
3322316 CTTAAACTTA
Statistics
Matches: 218, Mismatches: 33, Indels: 16
0.82 0.12 0.06
Matches are distributed among these distances:
278 4 0.02
279 69 0.32
280 51 0.23
281 81 0.37
282 13 0.06
ACGTcount: A:0.25, C:0.16, G:0.20, T:0.39
Consensus pattern (279 bp):
ATTTAGGATAGGTTCATTCCTTTTAAAATCATTTTTAAGTCCTTTAGGGGTACTGAGATACTTTC
ACGTCAAAGCTAACCCATAAGGGCATTTTCATAAGTTTTTAGAACCGAGTCCTAAGTTATCACCG
AGTTCGCTTTTATGCCGAGGTAGATATTTAGGATAGATTCATCCCATTTAAAATCATTTTTAAGT
CCTTTAGGGTACCGAGATATTTTCAAGCCGAAGGTATCCCTTAGAGGCATTTTCGTAATTTTTTA
GAATCAGCCAAAGGTAGAT
Found at i:3327214 original size:13 final size:13
Alignment explanation
Indices: 3327196--3327220 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3327186 CAATTCTTCA
3327196 TATATCGATACAT
1 TATATCGATACAT
3327209 TATATCGATACA
1 TATATCGATACA
3327221 ATGTGCCATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.16, G:0.08, T:0.36
Consensus pattern (13 bp):
TATATCGATACAT
Found at i:3327318 original size:20 final size:19
Alignment explanation
Indices: 3327271--3327322 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
3327261 TACGAGTTTC
* *
3327271 ATGTATCGATACAATGATC
1 ATGTATCGATACAAAGATA
* *
3327290 ATATATCGATACAAAGCCTA
1 ATGTATCGATACAAAG-ATA
3327310 ATGTATCGATACA
1 ATGTATCGATACA
3327323 TCTATTGTGT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
19 14 0.52
20 13 0.48
ACGTcount: A:0.40, C:0.17, G:0.13, T:0.29
Consensus pattern (19 bp):
ATGTATCGATACAAAGATA
Found at i:3327947 original size:27 final size:28
Alignment explanation
Indices: 3327917--3327971 Score: 85
Period size: 27 Copynumber: 2.0 Consensus size: 28
3327907 TTTTCAAGAT
3327917 TTTCTCCCCCTTATTGTTA-AAAAAAAC
1 TTTCTCCCCCTTATTGTTATAAAAAAAC
*
3327944 TTTCTCCCCCTTTTTGTTATTAAAAAAA
1 TTTCTCCCCCTTATTGTTA-TAAAAAAA
3327972 TTCTTTTTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 18 0.72
29 7 0.28
ACGTcount: A:0.31, C:0.24, G:0.04, T:0.42
Consensus pattern (28 bp):
TTTCTCCCCCTTATTGTTATAAAAAAAC
Found at i:3336156 original size:20 final size:21
Alignment explanation
Indices: 3336133--3336171 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
3336123 ACAAATCATA
3336133 ATGTATCGATACA-TCTGGAT
1 ATGTATCGATACATTCTGGAT
3336153 ATGTATCGATACATTCTGG
1 ATGTATCGATACATTCTGG
3336172 GGTTTTGACC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.28, C:0.15, G:0.21, T:0.36
Consensus pattern (21 bp):
ATGTATCGATACATTCTGGAT
Found at i:3337048 original size:89 final size:88
Alignment explanation
Indices: 3336825--3337060 Score: 219
Period size: 88 Copynumber: 2.7 Consensus size: 88
3336815 CTGCATCAGC
* * * * * * * * *
3336825 ATTTGCATCTTTTCATATGCTTTTGCCTTCCTATTGATGCTTTCATTTGCATCATTTCACCTGCA
1 ATTTGCATCATTCCATATGCATTTGCCTTTCTACTAATGCTTGCATTTGCATTATTTCACATGCA
*
3336890 TATGCATTTTAGATAACATTAGT
66 TATGCACTTTAGATAACATTAGT
* * * * *
3336913 ATTTGCATTATTCCATATGTATTTGCCTTTCTATTGATGTTTGCATTTGCATTATTTCACATAG-
1 ATTTGCATCATTCCATATGCATTTGCCTTTCTACTAATGCTTGCATTTGCATTATTTCACAT-GC
* * * *
3336977 ATCTGCACTTTAGATGACGTTTGGT
65 ATATGCACTTTAGATAAC-ATTAGT
*
3337002 ATTTGCATCA-TCTCATATGCATTTTCCATTT-TACTAATGCTTGCATTTAG-ATTATTTCA
1 ATTTGCATCATTC-CATATGCATTTGCC-TTTCTACTAATGCTTGCATTT-GCATTATTTCA
3337061 TGTATCTACA
Statistics
Matches: 122, Mismatches: 21, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
88 69 0.57
89 49 0.40
90 4 0.03
ACGTcount: A:0.22, C:0.18, G:0.12, T:0.47
Consensus pattern (88 bp):
ATTTGCATCATTCCATATGCATTTGCCTTTCTACTAATGCTTGCATTTGCATTATTTCACATGCA
TATGCACTTTAGATAACATTAGT
Found at i:3337889 original size:48 final size:48
Alignment explanation
Indices: 3337741--3337943 Score: 223
Period size: 48 Copynumber: 4.2 Consensus size: 48
3337731 TTAACTGTAT
* * *
3337741 CTGGTCAAACTCTATTCATCCCTCATTTGACTGTATTAGTGTTAGGGC
1 CTGGTCAAACTCTTTTCATCCCTCATTTGACTATATTGGTGTTAGGGC
* * * * * * *
3337789 CTAGTCAAACTCTTTCCA-CCCCCGTTGGATTATATTGGCT-TTCA-GAC
1 CTGGTCAAACTCTTTTCATCCCTCATTTGACTATATTGG-TGTT-AGGGC
* * *
3337836 CTGGTCAAACTCTTTTCATCTCTCATTTGACTACATTGGTATTAGGGC
1 CTGGTCAAACTCTTTTCATCCCTCATTTGACTATATTGGTGTTAGGGC
* * *
3337884 CTGGTCAAACTCTTTTGATCCCTCATTTGAATGTATTGGTGTTAGGGC
1 CTGGTCAAACTCTTTTCATCCCTCATTTGACTATATTGGTGTTAGGGC
3337932 CTGGTCAAACTC
1 CTGGTCAAACTC
3337944 GTCTCTCTCC
Statistics
Matches: 125, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
47 36 0.29
48 89 0.71
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.37
Consensus pattern (48 bp):
CTGGTCAAACTCTTTTCATCCCTCATTTGACTATATTGGTGTTAGGGC
Found at i:3338115 original size:45 final size:44
Alignment explanation
Indices: 3338000--3338116 Score: 182
Period size: 44 Copynumber: 2.7 Consensus size: 44
3337990 CTCATTTCGA
* *
3338000 TTTGAC-TATGGTTACCACCCTAGTCAAATCTGCCTTCTTCTTG
1 TTTGACATATGGTTACCACCTTAGTCAAATCTGCCTTCTTCCTG
*
3338043 TTTGACGTATGGTTACCACCTTAGTCAAATCTGCCTTCTTCCTG
1 TTTGACATATGGTTACCACCTTAGTCAAATCTGCCTTCTTCCTG
*
3338087 TTTGACTATATGGTTACCACCTTGGTCAAA
1 TTTGAC-ATATGGTTACCACCTTAGTCAAA
3338117 CGATTCGCAT
Statistics
Matches: 68, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
43 6 0.09
44 41 0.60
45 21 0.31
ACGTcount: A:0.21, C:0.26, G:0.15, T:0.38
Consensus pattern (44 bp):
TTTGACATATGGTTACCACCTTAGTCAAATCTGCCTTCTTCCTG
Found at i:3338285 original size:43 final size:43
Alignment explanation
Indices: 3338180--3338305 Score: 123
Period size: 43 Copynumber: 2.9 Consensus size: 43
3338170 ATCATCTGTC
* **
3338180 CGTTGGCTCAGACTCGAGAGACTCCTTTATCATTCGTCTACCTT
1 CGTTGGCTCAGACTCGGGAGACTCCTTTATCATTTATCTA-CTT
* *
3338224 -GTCGACTCAGAC-CAGGGAGACTTCCTTTATCATTTATCTA-TT
1 CGTTGGCTCAGACTC-GGGAGAC-TCCTTTATCATTTATCTACTT
* * *
3338266 CGTTGGCTTAGACTCGGGAGACCTCTTTTATCTTTTATCT
1 CGTTGGCTCAGACTCGGGAGA-CTCCTTTATCATTTATCT
3338306 GCCCGTCAAT
Statistics
Matches: 67, Mismatches: 10, Indels: 11
0.76 0.11 0.12
Matches are distributed among these distances:
42 3 0.04
43 46 0.69
44 18 0.27
ACGTcount: A:0.19, C:0.25, G:0.18, T:0.37
Consensus pattern (43 bp):
CGTTGGCTCAGACTCGGGAGACTCCTTTATCATTTATCTACTT
Found at i:3340171 original size:167 final size:165
Alignment explanation
Indices: 3339834--3340174 Score: 359
Period size: 167 Copynumber: 2.0 Consensus size: 165
3339824 GTTTCAAGTA
* ** * * *
3339834 TTAAAATTCATCAAATATTTTTATTTATTTCATATTAATTCAGTTTTCAAAAATTCATTCATTTT
1 TTAAAATTCATCAAACATCATTATTTATTTCATAGTAATTCAATTTTCAAAAATTCATTCATGTT
* * ** *** * * *
3339899 CATGAGCTTTTTATTTTTTTCCTTGAAATTCTTTTTTCTTTCGAAATATGTTGTTTTCTATTTCG
66 CATGAGCTTTTTAATTTTTTCCTTGAAATCCCATTTTCTTAAAAAATAAGTTGTTTTC-ATTCCA
* * * *
3339964 TAATTTTTTAGAGGGGATTTTTCTTGGTTTTTAATTT
130 TAATATTTTAGAGGGCATTTTTCTTAGTATTT-ATTT
*
3340001 TTAAAATTCATCAAACATCATTGTTTATTTCATAGTAATTCAATTTTCAAAAATTCATTCATGTT
1 TTAAAATTCATCAAACATCATTATTTATTTCATAGTAATTCAATTTTCAAAAATTCATTCATGTT
*
3340066 CATGAG-TTTTTGAATTTTTTCTTTGAAATCCCCATTTTCTTAAAAAATCAAGTT-TTTTC-TTC
66 CATGAGCTTTTT-AATTTTTTCCTTGAAAT-CCCATTTTCTTAAAAAAT-AAGTTGTTTTCATTC
*
3340128 CATAAATATTTTCGAGGGCA-TTTTCTTTAGTAAATTT-TTT
128 CAT-AATATTTTAGAGGGCATTTTTC-TTAGT--ATTTATTT
3340168 TTAAAAT
1 TTAAAAT
3340175 GTATCTACTA
Statistics
Matches: 144, Mismatches: 23, Indels: 14
0.80 0.13 0.08
Matches are distributed among these distances:
166 14 0.10
167 106 0.74
168 17 0.12
169 7 0.05
ACGTcount: A:0.28, C:0.12, G:0.08, T:0.52
Consensus pattern (165 bp):
TTAAAATTCATCAAACATCATTATTTATTTCATAGTAATTCAATTTTCAAAAATTCATTCATGTT
CATGAGCTTTTTAATTTTTTCCTTGAAATCCCATTTTCTTAAAAAATAAGTTGTTTTCATTCCAT
AATATTTTAGAGGGCATTTTTCTTAGTATTTATTT
Found at i:3340774 original size:21 final size:20
Alignment explanation
Indices: 3340747--3340794 Score: 60
Period size: 21 Copynumber: 2.4 Consensus size: 20
3340737 AAAAACAAGA
3340747 AAGAAAAGAGAAAGAAAAAT
1 AAGAAAAGAGAAAGAAAAAT
* **
3340767 AGAGAAAATAGGTAGAAAAAT
1 A-AGAAAAGAGAAAGAAAAAT
3340788 AAGAAAA
1 AAGAAAA
3340795 CTAAACTAGT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 7 0.29
21 17 0.71
ACGTcount: A:0.71, C:0.00, G:0.21, T:0.08
Consensus pattern (20 bp):
AAGAAAAGAGAAAGAAAAAT
Found at i:3341914 original size:149 final size:149
Alignment explanation
Indices: 3341708--3342019 Score: 362
Period size: 149 Copynumber: 2.1 Consensus size: 149
3341698 AATAAATAAT
* * * * * *
3341708 ATTAAATTCACTCCTCGTTAATTACAACAAACATTAATCGTTTTTTTATTTTTTATATTCTTATG
1 ATTAAATTAACTCCTC-TTAACTAAAACAAATATTAATCG-TTTTTAATTTTTTATATTCCTATG
* *
3341773 GGTATCCGTAGGGGTATAAAAGATTTCAAAAAAATTTTGTATCTTTTCAGGTATCCATTAAGATA
64 GGTATCCGTAGGGGTATAAAAGATTTC-AAAAATTTTTGTATCTTTTCAGGTATCCATTAAGGTA
3341838 TGAAATGATTTCTTT-AGAAATA
128 TGAAATGATTT-TTTCAGAAATA
* * *
3341860 ATTAAATTAACTCCT-TTCACTAAAATAAATAGTAATCGTTTTTAATTTTTTATATTCCTATGGG
1 ATTAAATTAACTCCTCTTAACTAAAACAAATATTAATCGTTTTTAATTTTTTATATTCCTATGGG
* * * * * *
3341924 TATCTGTAGGGGTATTAAAAGATTTCAAAATTTTTTGTAT-TTTGACGGGTTTCCATCAAGGTAT
66 TATCCGTAGGGGTA-TAAAAGATTTCAAAAATTTTTGTATCTTT-TCAGGTATCCATTAAGGTAT
*
3341988 GAAATGATACTTTTTGAGAAA-A
129 GAAATGAT--TTTTTCAGAAATA
3342010 ATTAAATTAA
1 ATTAAATTAA
3342020 ACATGTGAAA
Statistics
Matches: 138, Mismatches: 17, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
148 3 0.02
149 72 0.52
150 42 0.30
151 7 0.05
152 14 0.10
ACGTcount: A:0.35, C:0.11, G:0.13, T:0.42
Consensus pattern (149 bp):
ATTAAATTAACTCCTCTTAACTAAAACAAATATTAATCGTTTTTAATTTTTTATATTCCTATGGG
TATCCGTAGGGGTATAAAAGATTTCAAAAATTTTTGTATCTTTTCAGGTATCCATTAAGGTATGA
AATGATTTTTTCAGAAATA
Found at i:3342518 original size:150 final size:149
Alignment explanation
Indices: 3342238--3342521 Score: 337
Period size: 150 Copynumber: 1.9 Consensus size: 149
3342228 CCCTTCAATG
* *
3342238 AATATCAATTATTTTCAAGTCTTTTATATTCCTATGGGTATCCGTAGGGGTATAAAAGATTTCAA
1 AATATCAATCATTTTCAAGTCTTTTATATTCCTATGGGTATCCGTAGAGGTATAAAAGATTTC-A
* * * *
3342303 AAAACTTTTTTTATCCTTTTCGGTATCCATTAAGGTACGAAATGATTTCTTTAGAAATAACTAAA
65 AAAACTTTTTGTAT-CTTTTCGGTATCCATCAAGGTACAAAATGATTTCTTGAGAAATAACTAAA
3342368 TTAACTCCCCTCACTAAAATA
129 TTAACTCCCCTCACTAAAATA
* * *
3342389 AATATTAATCATTTTTAA-TCTTTTATATTCCTATGGGTATCTGTAGAGGTATTAAAAGATTTC-
1 AATATCAATCATTTTCAAGTCTTTTATATTCCTATGGGTATCCGTAGAGGTA-TAAAAGATTTCA
* *
3342452 AAAA-TTTTTCGTAT-TTTGGTGGGTTTCCATCAAGGTACAAAATGACACTTT-TTGAGAAA-AA
65 AAAACTTTTT-GTATCTTT--TCGGTATCCATCAAGGTACAAAATG--A-TTTCTTGAGAAATAA
*
3342513 TTAAATTAA
124 CTAAATTAA
3342522 ACATGTGAAA
Statistics
Matches: 114, Mismatches: 12, Indels: 15
0.81 0.09 0.11
Matches are distributed among these distances:
147 3 0.03
148 5 0.04
149 28 0.25
150 41 0.36
151 34 0.30
152 3 0.03
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.40
Consensus pattern (149 bp):
AATATCAATCATTTTCAAGTCTTTTATATTCCTATGGGTATCCGTAGAGGTATAAAAGATTTCAA
AAACTTTTTGTATCTTTTCGGTATCCATCAAGGTACAAAATGATTTCTTGAGAAATAACTAAATT
AACTCCCCTCACTAAAATA
Found at i:3345691 original size:20 final size:20
Alignment explanation
Indices: 3345621--3345699 Score: 77
Period size: 20 Copynumber: 3.9 Consensus size: 20
3345611 AAAAACCTAG
* *
3345621 AATGTATCGATACAATGAGA
1 AATGTATCGATACATTTAGA
* *
3345641 AATTTATCGATACAATTGTAAA
1 AATGTATCGATAC-ATT-TAGA
* *
3345663 AATGCATCGATACATTTAGT
1 AATGTATCGATACATTTAGA
*
3345683 AATGTATCGATATATTT
1 AATGTATCGATACATTT
3345700 CCTTAGTAGT
Statistics
Matches: 47, Mismatches: 10, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
20 29 0.62
21 5 0.11
22 13 0.28
ACGTcount: A:0.41, C:0.10, G:0.14, T:0.35
Consensus pattern (20 bp):
AATGTATCGATACATTTAGA
Found at i:3347674 original size:9 final size:9
Alignment explanation
Indices: 3347660--3347691 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
3347650 CATCACATAC
3347660 TTAGATATT
1 TTAGATATT
3347669 TTAGATATT
1 TTAGATATT
3347678 TTAGATATT
1 TTAGATATT
*
3347687 CTAGA
1 TTAGA
3347692 ATATCCATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.34, C:0.03, G:0.12, T:0.50
Consensus pattern (9 bp):
TTAGATATT
Found at i:3348624 original size:30 final size:30
Alignment explanation
Indices: 3348588--3348651 Score: 128
Period size: 30 Copynumber: 2.1 Consensus size: 30
3348578 TATTCTCTTG
3348588 TGTTTTGATTGTTAATTGATGAAAATTTAA
1 TGTTTTGATTGTTAATTGATGAAAATTTAA
3348618 TGTTTTGATTGTTAATTGATGAAAATTTAA
1 TGTTTTGATTGTTAATTGATGAAAATTTAA
3348648 TGTT
1 TGTT
3348652 AAGATGAGCA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.31, C:0.00, G:0.17, T:0.52
Consensus pattern (30 bp):
TGTTTTGATTGTTAATTGATGAAAATTTAA
Found at i:3354333 original size:166 final size:163
Alignment explanation
Indices: 3353919--3354390 Score: 553
Period size: 164 Copynumber: 2.9 Consensus size: 163
3353909 ATTACGAAAT
* * ** *
3353919 TTTTCTAC-TCCATAAATTTTTTTG-GAAGGAATTTTCTTAATTTTTAATTTCTAAAATTCATCA
1 TTTTCTACTTCGA-AAATTTTTTTGAG-AGGATTTTTCTTGGTTTTCAATTTCTAAAATTCATCA
* * * * *
3353982 GATATCATTATTTATTTTATATTAATTCAGTTTTCAAAAATTCATTCATTTTCATTCA-TTTTTT
64 AACATCA-TATTTATTTCATATTAATTCAGTTTTCAAAAATTCATTCATTTTCA-TGAGTTTTTG
* *
3354046 ATTTTTTCCTTGAAACTTCCTTTTTTGAAGTAAGGTG
127 ATTTTTTTCTTGAAACTTCCTTTTTTGAAATAAGGTG
* * * *
3354083 TTTTCTACTCCGTAAATTTTTTCGAG-GAGATTTTTCTTGGTTTTCAATTTTTAAAATTCATCAA
1 TTTTCTACTTCGAAAATTTTTTTGAGAG-GATTTTTCTTGGTTTTCAATTTCTAAAATTCATCAA
*
3354147 ACATCAGTATTTATTTCATATTAATTCAATTTTCAAAAATTCATTCATTTTCATGAGTTTTTGAT
65 ACATCA-TATTTATTTCATATTAATTCAGTTTTCAAAAATTCATTCATTTTCATGAGTTTTTGAT
*
3354212 TTTTTTCTTGAAACTTCTCTTTTTCCT-AAATATGGTG
129 TTTTTTCTTGAAACTTC-CTTTTT--TGAAATAAGGTG
* *
3354249 TTTTCTACTTCGAAAATTTTTTTGAGAGGATTTTTCTCGGTTTTCAATTTCTAGAATTCATCAAA
1 TTTTCTACTTCGAAAATTTTTTTGAGAGGATTTTTCTTGGTTTTCAATTTCTAAAATTCATCAAA
* * * * * *
3354314 CGTCATCATTTGA-TTCATATTAATACAGTTTTTAAAAATTTATCCATTTTCATGAG-TTTTGAA
66 CATCAT-ATTT-ATTTCATATTAATTCAGTTTTCAAAAATTCATTCATTTTCATGAGTTTTTGAT
3354377 TTTTTTCTTTGAAA
129 TTTTTTC-TTGAAA
3354391 TCCCTATTTT
Statistics
Matches: 265, Mismatches: 32, Indels: 20
0.84 0.10 0.06
Matches are distributed among these distances:
163 3 0.01
164 120 0.45
165 22 0.08
166 117 0.44
167 3 0.01
ACGTcount: A:0.28, C:0.13, G:0.09, T:0.51
Consensus pattern (163 bp):
TTTTCTACTTCGAAAATTTTTTTGAGAGGATTTTTCTTGGTTTTCAATTTCTAAAATTCATCAAA
CATCATATTTATTTCATATTAATTCAGTTTTCAAAAATTCATTCATTTTCATGAGTTTTTGATTT
TTTTCTTGAAACTTCCTTTTTTGAAATAAGGTG
Found at i:3355060 original size:24 final size:24
Alignment explanation
Indices: 3355027--3355072 Score: 67
Period size: 23 Copynumber: 1.9 Consensus size: 24
3355017 TGAGAAATAG
3355027 AGAACGAAAAGACAAAAAAAAAAAA
1 AGAACGAAAAGA-AAAAAAAAAAAA
*
3355052 AGAA-GAAAAGAAAGAAAAAAA
1 AGAACGAAAAGAAAAAAAAAAA
3355073 GAGAAAATAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 9 0.45
24 7 0.35
25 4 0.20
ACGTcount: A:0.80, C:0.04, G:0.15, T:0.00
Consensus pattern (24 bp):
AGAACGAAAAGAAAAAAAAAAAAA
Found at i:3356042 original size:18 final size:18
Alignment explanation
Indices: 3356019--3356053 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
3356009 TTTTTAATCT
3356019 TTTATATTCCTATGGGCC
1 TTTATATTCCTATGGGCC
*
3356037 TTTATATTTCTATGGGC
1 TTTATATTCCTATGGGC
3356054 TTCCGTAAGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.17, C:0.17, G:0.17, T:0.49
Consensus pattern (18 bp):
TTTATATTCCTATGGGCC
Found at i:3357148 original size:156 final size:155
Alignment explanation
Indices: 3356914--3357661 Score: 889
Period size: 156 Copynumber: 4.8 Consensus size: 155
3356904 ACATATCTCT
* * * * * * *
3356914 TAGGGGCATTTTCATAATTTTTTTAGAACCGAGTCCTAAGCTATCATCAGGTCCGCTTTTATGCC
1 TAGGGGCATTTTCGT-ACTTTCTTAGAACCGAGTCCTAGGCTGTCACCTGGTCCGCTTTTATGCC
* * * *
3356979 GAAGGTGGGCATTTAGGATAGGGTCATCGCATTTCTAGTCTTTTTAAATCCTTAAGGGTTGTCGG
65 GAAGGTGGGCATTTAGGATAGGTTCATCACATTTCTAGTCTTTTTAAGTCCTTTAGGGTTGTCGG
* * *
3357044 GGTACTTTTACGTCAAAGGCATGCCTA
130 GGTACTTTTACGTCGAAGGTATACC-A
* * *
3357071 TAGGGGCATTTGT-GTACTTTCTTATAACCGAGTCCTAGCCTGTCACCTGCTCCGCTTTTATGCC
1 TAGGGGCATTT-TCGTACTTTCTTAGAACCGAGTCCTAGGCTGTCACCTGGTCCGCTTTTATGCC
* * * *
3357135 AAAGGTGGGCATTTAGGATAGGTTCATCACATTTCTATTCTTTTTAAGTCCTTTAGGGTT-ACTA
65 GAAGGTGGGCATTTAGGATAGGTTCATCACATTTCTAGTCTTTTTAAGTCCTTTAGGGTTGTC-G
*
3357199 GGGTACTTTTACATCGAAGGTATACACA
129 GGGTACTTTTACGTCGAAGGTATAC-CA
* * * * ** **
3357227 TTGGGGTATTTTCGTATTTTCTTAGAATCGAGTCCTAGGCTGTCACCAAGTCCAATTTTATGCCG
1 TAGGGGCATTTTCGTACTTTCTTAGAACCGAGTCCTAGGCTGTCACCTGGTCCGCTTTTATGCCG
* ** * * *
3357292 AAGGTGGCCATTTAGGATAGGTTCATTGCATTTCTAGTCTTTTTAATTCTTTTAGGGTTGTCGAG
66 AAGGTGGGCATTTAGGATAGGTTCATCACATTTCTAGTCTTTTTAAGTCCTTTAGGGTTGTCGGG
* * *
3357357 GCACTTTTATGTTGAAGGTATACCCA
131 GTACTTTTACGTCGAAGGTATA-CCA
** * * * *
3357383 TAAAGGCATTTTCATCCTTT-TATAGAACCGAGTCCTAGGCTGTCATC-GAGTCAGCTTTTATGC
1 TAGGGGCATTTTCGTACTTTCT-TAGAACCGAGTCCTAGGCTGTCACCTG-GTCCGCTTTTATGC
* *
3357446 TGAAGGTAGGCATTTAGGATAGGTTCATCACATTTCTAGTCTTTTTAAGTCC-TTAGGGTTGTCG
64 CGAAGGTGGGCATTTAGGATAGGTTCATCACATTTCTAGTCTTTTTAAGTCCTTTAGGGTTGTCG
3357510 GGGTACTTTTACGTCGAAGGTATAACCA
129 GGGTACTTTTACGTCGAAGGTAT-ACCA
* * *
3357538 TAGGGGCATTTT-GTACTTTCTTAGAACCGAGTCCTAGGTTGTTA-CTAGGTCCGCTTTTATGTC
1 TAGGGGCATTTTCGTACTTTCTTAGAACCGAGTCCTAGGCTGTCACCT-GGTCCGCTTTTATGCC
* *
3357601 GAAGGTGGGCATTTAGGATAGGTTCATCACATTTCTAGTCTTTTCAAGTCTTTTAGGGTTG
65 GAAGGTGGGCATTTAGGATAGGTTCATCACATTTCTAGTCTTTTTAAGTCCTTTAGGGTTG
3357662 CCTAGGATAC
Statistics
Matches: 495, Mismatches: 83, Indels: 28
0.82 0.14 0.05
Matches are distributed among these distances:
153 1 0.00
154 86 0.17
155 58 0.12
156 334 0.67
157 15 0.03
158 1 0.00
ACGTcount: A:0.22, C:0.18, G:0.23, T:0.37
Consensus pattern (155 bp):
TAGGGGCATTTTCGTACTTTCTTAGAACCGAGTCCTAGGCTGTCACCTGGTCCGCTTTTATGCCG
AAGGTGGGCATTTAGGATAGGTTCATCACATTTCTAGTCTTTTTAAGTCCTTTAGGGTTGTCGGG
GTACTTTTACGTCGAAGGTATACCA
Found at i:3365612 original size:38 final size:37
Alignment explanation
Indices: 3365562--3365647 Score: 154
Period size: 38 Copynumber: 2.3 Consensus size: 37
3365552 TATAATAAAA
3365562 AAGGGGAGAAATATTGTTTTGAAAATAAATTTTTATC
1 AAGGGGAGAAATATTGTTTTGAAAATAAATTTTTATC
3365599 AAGGGAGAGAAATATTGTTTTGAAAATAAATTTTTATC
1 AAGGG-GAGAAATATTGTTTTGAAAATAAATTTTTATC
3365637 AAGGGGGAGAA
1 AA-GGGGAGAA
3365648 CATTTTTTTA
Statistics
Matches: 47, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
37 5 0.11
38 39 0.83
39 3 0.06
ACGTcount: A:0.42, C:0.02, G:0.23, T:0.33
Consensus pattern (37 bp):
AAGGGGAGAAATATTGTTTTGAAAATAAATTTTTATC
Found at i:3366318 original size:19 final size:19
Alignment explanation
Indices: 3366294--3366365 Score: 117
Period size: 19 Copynumber: 3.7 Consensus size: 19
3366284 ATCAATACAA
3366294 TGTATCGATACATGTTCAT
1 TGTATCGATACATGTTCAT
3366313 TGTATCGATACATGTTCAT
1 TGTATCGATACATGTTCAT
**
3366332 TGTATCGATACATGGACAAT
1 TGTATCGATACATGTTC-AT
3366352 TGTATCGATACATG
1 TGTATCGATACATG
3366366 AAACTGTAGT
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
19 34 0.68
20 16 0.32
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38
Consensus pattern (19 bp):
TGTATCGATACATGTTCAT
Found at i:3366432 original size:13 final size:13
Alignment explanation
Indices: 3366414--3366438 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3366404 CATGGCACAT
3366414 TGTATCGATACAA
1 TGTATCGATACAA
3366427 TGTATCGATACA
1 TGTATCGATACA
3366439 TGATGAATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3366449 original size:33 final size:33
Alignment explanation
Indices: 3366394--3366458 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
3366384 TACCACTGTT
*
3366394 TGTATCGATACATGGCACATTGTATCGATACAA
1 TGTATCGATACATGGCACATTGTATCAATACAA
3366427 TGTATCGATACATGATG-A-ATTGTATCAATACA
1 TGTATCGATACATG--GCACATTGTATCAATACA
3366459 TTGCTTCAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
33 27 0.93
34 1 0.03
35 1 0.03
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.32
Consensus pattern (33 bp):
TGTATCGATACATGGCACATTGTATCAATACAA
Found at i:3369843 original size:7 final size:6
Alignment explanation
Indices: 3369811--3369851 Score: 50
Period size: 6 Copynumber: 6.8 Consensus size: 6
3369801 ATTTCCTCTA
3369811 AAAAAG AAGAAA- AAAAAG -AAAAG AAAAAGG AAAAAG AAAAA
1 AAAAAG AA-AAAG AAAAAG AAAAAG AAAAA-G AAAAAG AAAAA
3369852 AACATGAAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
5 8 0.26
6 14 0.45
7 9 0.29
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:3371668 original size:90 final size:90
Alignment explanation
Indices: 3371494--3371701 Score: 253
Period size: 90 Copynumber: 2.3 Consensus size: 90
3371484 TAAATCCTAG
*
3371494 ATGGTATTGATGCATTACAAA-CTCTAATTTCCATGGGGCAAGGTGCAGCCCACACACTCCCAAT
1 ATGGTATTGATGCATTACAAAGCT-TGATTTCCATGGGGCAAGGTGCAGCCCACACACTCCCAAT
*
3371558 CGTATCCCCTCTTTCTCAACCACTAA
65 CATATCCCCTCTTTCTCAACCACTAA
* * * * *
3371584 ATGGTATTGATGCATTACAAAGCTTGATTTCCTTTGGGGCAAGGTGCAGGCTACATATTCCCAAT
1 ATGGTATTGATGCATTACAAAGCTTGATTTCC-ATGGGGCAAGGTGCAGCCCACACACTCCCAAT
* *
3371649 TATAT--CC-CTTTCATCCAACCACTAG
65 CATATCCCCTCTTTC-T-CAACCACTAA
* *
3371674 ATGGTATTGATGCATCACAAAGCCTGAT
1 ATGGTATTGATGCATTACAAAGCTTGAT
3371702 ATATTTGGGG
Statistics
Matches: 103, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
88 5 0.05
89 3 0.03
90 63 0.61
91 32 0.31
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.29
Consensus pattern (90 bp):
ATGGTATTGATGCATTACAAAGCTTGATTTCCATGGGGCAAGGTGCAGCCCACACACTCCCAATC
ATATCCCCTCTTTCTCAACCACTAA
Found at i:3372528 original size:43 final size:43
Alignment explanation
Indices: 3372370--3372776 Score: 262
Period size: 43 Copynumber: 9.5 Consensus size: 43
3372360 AATTTGCCCA
* ** * *
3372370 TCGGCTTTGACCTTAGAGACTT-CTTTCCCTTAAGTTTGCTTG
1 TCGGCTTTGACCCTAGAGACTTCCTCACCCTTAAGTCTGCATG
*** * * * * * * *
3372412 TCATTTTTGACCTTGGAGACTTCTTCACCCTGAAGTCTACCTA
1 TCGGCTTTGACCCTAGAGACTTCCTCACCCTTAAGTCTGCATG
* * * *
3372455 TCGGC-TTGACCTTGGAGACTTCTTCCCCCTTAAGTCTGCATG
1 TCGGCTTTGACCCTAGAGACTTCCTCACCCTTAAGTCTGCATG
* * *
3372497 TTGACTTTGACCCTAGAGACTTCCTCACCCTTAAGTTTGCATG
1 TCGGCTTTGACCCTAGAGACTTCCTCACCCTTAAGTCTGCATG
* * * ** **** *
3372540 TCGGCTTTAACCTTGGAGACTTTTTTGGTCTTAAGTCTGCTTG
1 TCGGCTTTGACCCTAGAGACTTCCTCACCCTTAAGTCTGCATG
* ** * **
3372583 TCGGCTTTGACCCTAGAGACTTCTTTGCCCTAAAGTCTGCCCG
1 TCGGCTTTGACCCTAGAGACTTCCTCACCCTTAAGTCTGCATG
* *
3372626 TCGGCTTTGACCCTAGAGACTTCCTTCACCTTTAAGTCTACATG
1 TCGGCTTTGACCCTAGAGACTTCC-TCACCCTTAAGTCTGCATG
* * * * * * *
3372670 TCGGCTTTGACCTTGGAAACTTCCTTACCCCTAAGTATGCCTG
1 TCGGCTTTGACCCTAGAGACTTCCTCACCCTTAAGTCTGCATG
** * ** * * * *
3372713 TTAGTTTTGACCCTAGAGACTTTTTTACCCTT-TGTTTGCCTG
1 TCGGCTTTGACCCTAGAGACTTCCTCACCCTTAAGTCTGCATG
**
3372755 TCGGCTTTGACCCGGGAGACTT
1 TCGGCTTTGACCCTAGAGACTT
3372777 TTTTCATCTT
Statistics
Matches: 280, Mismatches: 82, Indels: 6
0.76 0.22 0.02
Matches are distributed among these distances:
42 78 0.28
43 169 0.60
44 33 0.12
ACGTcount: A:0.17, C:0.27, G:0.19, T:0.37
Consensus pattern (43 bp):
TCGGCTTTGACCCTAGAGACTTCCTCACCCTTAAGTCTGCATG
Found at i:3372644 original size:129 final size:128
Alignment explanation
Indices: 3372364--3372692 Score: 354
Period size: 128 Copynumber: 2.6 Consensus size: 128
3372354 ATCTTAAATT
* * ** * ***
3372364 TGCCCATCGGCTTTGACCTTAGAGACTT-CTTTCCCTTAAGTTTGCTTGTCATTTTTGACCTTGG
1 TGCCCGTCGGCTTTGACCCTAGAGACTTCCTCACCCTTAAGTTTGCATGTCGGCTTTGACCTTGG
* * *
3372428 AGACTTCTTCACCCTGAAGTCTACCTATCGGCTTGACCTTGGAGACTTCTTCCCCCTTAAGTC
66 AGACTTCTTCACCCTGAAGTCTACCTATCGGCTTGACCCTAGAGACTTCTTCCCCCTAAAGTC
** * * *
3372491 TGCATGTTGACTTTGACCCTAGAGACTTCCTCACCCTTAAGTTTGCATGTCGGCTTTAACCTTGG
1 TGCCCGTCGGCTTTGACCCTAGAGACTTCCTCACCCTTAAGTTTGCATGTCGGCTTTGACCTTGG
* **** * * * * **
3372556 AGACTTTTTTGGTCTTAAGTCTGCTTGTCGGCTTTGACCCTAGAGACTTCTTTGCCCTAAAGTC
66 AGACTTCTTCACCCTGAAGTCTACCTATCGGC-TTGACCCTAGAGACTTCTTCCCCCTAAAGTC
* * *
3372620 TGCCCGTCGGCTTTGACCCTAGAGACTTCCTTCACCTTTAAGTCTACATGTCGGCTTTGACCTTG
1 TGCCCGTCGGCTTTGACCCTAGAGACTTCC-TCACCCTTAAGTTTGCATGTCGGCTTTGACCTTG
*
3372685 GAAACTTC
65 GAGACTTC
3372693 CTTACCCCTA
Statistics
Matches: 162, Mismatches: 37, Indels: 3
0.80 0.18 0.01
Matches are distributed among these distances:
127 22 0.14
128 52 0.32
129 52 0.32
130 36 0.22
ACGTcount: A:0.17, C:0.28, G:0.19, T:0.36
Consensus pattern (128 bp):
TGCCCGTCGGCTTTGACCCTAGAGACTTCCTCACCCTTAAGTTTGCATGTCGGCTTTGACCTTGG
AGACTTCTTCACCCTGAAGTCTACCTATCGGCTTGACCCTAGAGACTTCTTCCCCCTAAAGTC
Found at i:3372780 original size:43 final size:43
Alignment explanation
Indices: 3372718--3372819 Score: 118
Period size: 43 Copynumber: 2.4 Consensus size: 43
3372708 GCCTGTTAGT
** * *
3372718 TTTGACCCTAGAGACTTTTTT-ACCCTTT-GTTTGCCTGTCGGC
1 TTTGACCCGGGAGACTTTTTTCA-CCTTTCGTTTGCCGGTCAGC
* *
3372760 TTTGACCCGGGAGACTTTTTTCATCTTTCGTTTGTCGGTCAGC
1 TTTGACCCGGGAGACTTTTTTCACCTTTCGTTTGCCGGTCAGC
*
3372803 TTTGACCTGGGAGACTT
1 TTTGACCCGGGAGACTT
3372820 CTTCATCCAC
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
42 23 0.45
43 28 0.55
ACGTcount: A:0.13, C:0.24, G:0.23, T:0.41
Consensus pattern (43 bp):
TTTGACCCGGGAGACTTTTTTCACCTTTCGTTTGCCGGTCAGC
Found at i:3373279 original size:127 final size:127
Alignment explanation
Indices: 3372882--3373276 Score: 345
Period size: 126 Copynumber: 3.1 Consensus size: 127
3372872 CCGTCTACTT
* * * * ** **
3372882 ATCTTTCATCTACCCATCGACTTAAACATGG-GAGACTTCTTCATCCACCATCTGCTTGTCGGCT
1 ATCTTTCGTCTGCCCATCAACTTAAAC-TGGAGAGACTTCTTCATCCACCATCTACCCGTTAGCT
* * * * * * * * *
3372946 CAATCCCGAGAGACTTCCTTTTTCAACTTTTTGCTCGTC-GACTTTGA-CCAAAAGACTTTCTTC
65 CAGT-CCGAGAGACTTCCTTTATCAACTATCTACCCGTCAG-CTTTGACCCGAGAGACTTTCTTA
** ** ** * *
3373009 ATCTTTCGTCTGCCCATCAGTTTTAAA-TCAAGAGACTTCTTCATCCACTGTCTACCC-ATCGCT
1 ATCTTTCGTCTGCCCATCA-ACTTAAACTGGAGAGACTTCTTCATCCACCATCTACCCGTTAGC-
* * * * * *
3373072 TCAGTCCAAAAGACTTCTTTTATCAACTATCTACCCGTCAGCTTAGACCTGGGATG-C-TTCTTA
64 TCAGTCCGAGAGACTTCCTTTATCAACTATCTACCCGTCAGCTTTGACCCGAGA-GACTTTCTTA
* * *
3373135 ATCTTTCATTTGCCCATCAACTTAAACTGGAGAGACTTCTTCATCCACCATCTACCCGTTAACTC
1 ATCTTTCGTCTGCCCATCAACTTAAACTGGAGAGACTTCTTCATCCACCATCTACCCGTTAGCTC
* *
3373200 AGTCTCGAGAGACATCCTTTATCAACTATCTACCCGTCAGCTTTGACCCGAGAGACTTTCTTT
66 AGTC-CGAGAGACTTCCTTTATCAACTATCTACCCGTCAGCTTTGACCCGAGAGACTTTCTTA
*
3373263 ATCTTTTGTCTGCC
1 ATCTTTCGTCTGCC
3373277 ATCGGCTTTG
Statistics
Matches: 205, Mismatches: 52, Indels: 21
0.74 0.19 0.08
Matches are distributed among these distances:
125 5 0.02
126 89 0.43
127 89 0.43
128 22 0.11
ACGTcount: A:0.23, C:0.30, G:0.13, T:0.34
Consensus pattern (127 bp):
ATCTTTCGTCTGCCCATCAACTTAAACTGGAGAGACTTCTTCATCCACCATCTACCCGTTAGCTC
AGTCCGAGAGACTTCCTTTATCAACTATCTACCCGTCAGCTTTGACCCGAGAGACTTTCTTA
Found at i:3373324 original size:42 final size:42
Alignment explanation
Indices: 3373275--3373434 Score: 128
Period size: 43 Copynumber: 3.8 Consensus size: 42
3373265 CTTTTGTCTG
* * *
3373275 CCATCGGCTTTGACCTAGGAGATTTCTTCATCCACCGTTTGC
1 CCATCGGCTTAGACCTAGGAGATTTCTTCATCAACCATTTGC
* * * *
3373317 CCGTCGGCTTAG-TCTCAGGAGACTTCCTTTATCAACCATTTGC
1 CCATCGGCTTAGACCT-AGGAGA-TTTCTTCATCAACCATTTGC
* *
3373360 CCATCGGCTTAGACCT-GAGAGATTTCTTTTATCAATCATTTGC
1 CCATCGGCTTAGACCTAG-GAGATTTC-TTCATCAACCATTTGC
*** * *
3373403 CTGCCGGCTTAGA-CTCGAGAGACTTCTTCATC
1 CCATCGGCTTAGACCTAG-GAGATTTCTTCATC
3373435 CATTGTCTGC
Statistics
Matches: 96, Mismatches: 16, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
41 2 0.02
42 27 0.28
43 65 0.68
44 2 0.02
ACGTcount: A:0.19, C:0.29, G:0.19, T:0.33
Consensus pattern (42 bp):
CCATCGGCTTAGACCTAGGAGATTTCTTCATCAACCATTTGC
Found at i:3373368 original size:43 final size:44
Alignment explanation
Indices: 3373312--3373519 Score: 153
Period size: 43 Copynumber: 4.9 Consensus size: 44
3373302 TCATCCACCG
* * *
3373312 TTTGCCCGTCGGCTTAGTCTCAG-GAGACTTCCTTTATCAACCA
1 TTTGCCCATCGGCTTAGACTCAGAGAGACTTCCTTTATCAATCA
* * *
3373355 TTTGCCCATCGGCTTAGAC-CTGAGAGATTTCTTTTATCAATCA
1 TTTGCCCATCGGCTTAGACTCAGAGAGACTTCCTTTATCAATCA
*** * * **
3373398 TTTGCCTGCCGGCTTAGACTC-GAGAGACTT-CTTCATCCATTG
1 TTTGCCCATCGGCTTAGACTCAGAGAGACTTCCTTTATCAATCA
* * * * * *
3373440 TCTGCCCATCAG-TTCAGTCCCAG-GAGACTTCTTTTATCAATCG
1 TTTGCCCATCGGCTT-AGACTCAGAGAGACTTCCTTTATCAATCA
* * *
3373483 TCTGCCCATCGGCTTAAACCCA-AGAGACTT-CTTTATC
1 TTTGCCCATCGGCTTAGACTCAGAGAGACTTCCTTTATC
3373520 TTTCATCTAC
Statistics
Matches: 128, Mismatches: 30, Indels: 15
0.74 0.17 0.09
Matches are distributed among these distances:
41 2 0.02
42 33 0.26
43 90 0.70
44 3 0.02
ACGTcount: A:0.21, C:0.29, G:0.17, T:0.33
Consensus pattern (44 bp):
TTTGCCCATCGGCTTAGACTCAGAGAGACTTCCTTTATCAATCA
Found at i:3373446 original size:85 final size:84
Alignment explanation
Indices: 3373239--3373449 Score: 194
Period size: 85 Copynumber: 2.5 Consensus size: 84
3373229 CTACCCGTCA
* * ** *
3373239 GCTTTGACCCGAGAGACTTTCTTTATCTTTTGTCTG-CCATCGGCTTTGACCTAGGAGATTTCTT
1 GCTTAGACTCGAGAGAC-TTCTTTATCAATTGTCTGCCCATCGGCTTAGACCTAGGAGATTTCTT
* * *
3373303 CATCCACCGTTTGCCCGTCG
65 CATCAACCATTTGCCCGCCG
* *** *
3373323 GCTTAGTCTC-AGGAGACTTCCTTTATCAACCATTTGCCCATCGGCTTAGACCT-GAGAGATTTC
1 GCTTAGACTCGA-GAGACTT-CTTTATCAATTGTCTGCCCATCGGCTTAGACCTAG-GAGATTTC
* * *
3373386 TTTTATCAATCATTTGCCTGCCG
63 -TTCATCAACCATTTGCCCGCCG
* *
3373409 GCTTAGACTCGAGAGACTTCTTCATCCATTGTCTGCCCATC
1 GCTTAGACTCGAGAGACTTCTTTATCAATTGTCTGCCCATC
3373450 AGTTCAGTCC
Statistics
Matches: 98, Mismatches: 23, Indels: 11
0.74 0.17 0.08
Matches are distributed among these distances:
83 3 0.03
84 23 0.23
85 39 0.40
86 32 0.33
87 1 0.01
ACGTcount: A:0.18, C:0.28, G:0.18, T:0.35
Consensus pattern (84 bp):
GCTTAGACTCGAGAGACTTCTTTATCAATTGTCTGCCCATCGGCTTAGACCTAGGAGATTTCTTC
ATCAACCATTTGCCCGCCG
Found at i:3373594 original size:127 final size:127
Alignment explanation
Indices: 3373298--3373642 Score: 370
Period size: 127 Copynumber: 2.7 Consensus size: 127
3373288 CCTAGGAGAT
* * * * * *
3373298 TTCTTCATCCACCGTTTGCCCGTCGGCTTAGTCTCAGGAGACTTCCTTTATCAACCATTTGCCCA
1 TTCTTCATCCATCGTCTGCCCGTCAGCTCAGTCTCAGGAGACTTCCTTTATCAACCGTCTGCCCA
* ** * * * *
3373363 TCGGCTTAGACCTGAGAGATTTCTTTTATCAATCATTTGCCTGCCGGCTTAGACTCGAGAGAC
66 TCGGCTTAAACCCAAGAGACTTC-TTTATCAATCATCTACCTGCCGGCTTAGACTCGAAAGAC
* * * * * *
3373426 TTCTTCATCCATTGTCTGCCCATCAGTTCAGTCCCAGGAGACTTCTTTTATCAATCGTCTGCCCA
1 TTCTTCATCCATCGTCTGCCCGTCAGCTCAGTCTCAGGAGACTTCCTTTATCAACCGTCTGCCCA
** * ** **
3373491 TCGGCTTAAACCCAAGAGACTTCTTTATCTTTCATCTACTTGTTGGCTTAGACTCGAAAGGT
66 TCGGCTTAAACCCAAGAGACTTCTTTATCAATCATCTACCTGCCGGCTTAGACTCGAAAGAC
* * *
3373553 TTTTTCATCCATCGTCTGCCCGTCAACTCAGTCTC-GAGAGACTTCCTTTATCAACCGTCT-ACC
1 TTCTTCATCCATCGTCTGCCCGTCAGCTCAGTCTCAG-GAGACTTCCTTTATCAACCGTCTGCCC
* *
3373616 AGTCAGCTTAAACCCAAGAAACTTCTT
65 A-TCGGCTTAAACCCAAGAGACTTCTT
3373643 CATCCATAGT
Statistics
Matches: 178, Mismatches: 37, Indels: 5
0.81 0.17 0.02
Matches are distributed among these distances:
126 4 0.02
127 102 0.57
128 72 0.40
ACGTcount: A:0.21, C:0.29, G:0.16, T:0.33
Consensus pattern (127 bp):
TTCTTCATCCATCGTCTGCCCGTCAGCTCAGTCTCAGGAGACTTCCTTTATCAACCGTCTGCCCA
TCGGCTTAAACCCAAGAGACTTCTTTATCAATCATCTACCTGCCGGCTTAGACTCGAAAGAC
Found at i:3373645 original size:85 final size:83
Alignment explanation
Indices: 3373556--3374292 Score: 406
Period size: 85 Copynumber: 8.7 Consensus size: 83
3373546 GAAAGGTTTT
* * * *
3373556 TTCATCCATCGTCTGCCCGTCAACTCAGTCTCGAGAGACTTCCTTTATCAACCGTCTACCAGTCA
1 TTCATCCATAGTCTACCCGTCAGCTCAGTC-CGAGAGACTTCCTTTATCAATCGTCTACC-GTCA
*
3373621 GCTTAAACCCAAGAAACTTC
64 GCTTAGACCCAAGAAACTTC
* * * * *
3373641 TTCATCCATAGTCTATCCGTCGGCTCAGTCCTAGGAGACTTTCTTTATCAATCGTCTACCCGTCG
1 TTCATCCATAGTCTACCCGTCAGCTCAGTCCGA-GAGACTTCCTTTATCAATCGTCTA-CCGTCA
* *
3373706 GCTTAGACCCGAGAGACTTC
64 GCTTAGACCCAAGAAACTTC
* * ** *
3373726 TTCAAT-CATTGTCTACCCATCAGCTCAGTCCTGAGAGACTTTTTTTATCAATTGTCTACTCGTC
1 TTC-ATCCATAGTCTACCCGTCAGCTCAGTCC-GAGAGACTTCCTTTATCAATCGTCTAC-CGTC
*
3373790 AGCTTAGA-CCTAGAAGACTTC
63 AGCTTAGACCCAAGAA-ACTTC
* ** * * * *
3373811 TTCATCCATAGTCTGCTTGTCGGCTCAGTCTTG-GAAGACTTCCTTTATCAATCGTCTACCCATT
1 TTCATCCATAGTCTACCCGTCAGCTCAGTC-CGAG-AGACTTCCTTTATCAATCGTCTA-CCGTC
* **** *
3373875 GGCTTAGACATGGGAGACTTC
63 AGCTTAGACCCAAGAAACTTC
* * * * * * * * *
3373896 TTCATCCATAGTTTGCTCGTCGGCTTAGTCCTGAAAGACTTCTTTTATCAATCATCTACCCGTTA
1 TTCATCCATAGTCTACCCGTCAGCTCAGTCC-GAGAGACTTCCTTTATCAATCGTCTA-CCGTCA
* * * *
3373961 GCTTAGACCTAGGAGACTTT
64 GCTTAGACCCAAGAAACTTC
* * * * * * * *
3373981 TTCATCCATTA-TCTACTCATCAGCTTAGTCTTGGGAGACTTCTTTTAGCAATCATCTACCTGTC
1 TTCATCCA-TAGTCTACCCGTCAGCTCAGTC-CGAGAGACTTCCTTTATCAATCGTCTACC-GTC
*
3374045 -GACTTAGACCCGAGAAACTTC
63 AG-CTTAGACCCAAGAAACTTC
** * * * * * * * *
3374066 ATT-ATTTATTGTTTGCTCGTCGGCTCAGTCTCGAGAGACTTCCTTTATCCATCATCTGCCCGTC
1 -TTCATCCATAGTCTACCCGTCAGCTCAGTC-CGAGAGACTTCCTTTATCAATCGTCT-ACCGTC
*** * * *
3374130 AGCTTAGACCTGGGAGATTTT
63 AGCTTAGACCCAAGAAACTTC
* * ** * * * * * * * * *
3374151 TTCATCTATAGTCTGCTTGTCGGCTTAATCTTGGGAGACTTTCTTTATCAATTGTCTACTTGTCG
1 TTCATCCATAGTCTACCCGTCAGCTCAGTC-CGAGAGACTTCCTTTATCAATCGTCTAC-CGTCA
* * * *
3374216 GCTTAAACCTAGGAGACTTC
64 GCTTAGACCCAAGAAACTTC
* * * * *
3374236 TTCATCCATTGTTTACCCATCAGCTCAGTCCGAGGATATTTCCTTTATCAATCGTCT
1 TTCATCCATAGTCTACCCGTCAGCTCAGTCCGA-GAGACTTCCTTTATCAATCGTCT
3374293 GCTCGTCGAC
Statistics
Matches: 508, Mismatches: 120, Indels: 48
0.75 0.18 0.07
Matches are distributed among these distances:
84 19 0.04
85 474 0.93
86 15 0.03
ACGTcount: A:0.22, C:0.27, G:0.17, T:0.35
Consensus pattern (83 bp):
TTCATCCATAGTCTACCCGTCAGCTCAGTCCGAGAGACTTCCTTTATCAATCGTCTACCGTCAGC
TTAGACCCAAGAAACTTC
Found at i:3373687 original size:170 final size:169
Alignment explanation
Indices: 3373506--3374299 Score: 448
Period size: 170 Copynumber: 4.7 Consensus size: 169
3373496 TTAAACCCAA
** ** * * ** *
3373506 GAGAC-TTCTTTATCTTTCATCTACTTGTTGGCTTAGACTCGAAAGGTTTTTTC-ATCCATCGTC
1 GAGACTTTCTTTATCAATCATCTACCCGTCGGCTTAGACCCGAAAGACTTCTTCAAT-CATCGTC
* *
3373569 TGCCCGTCAACTCAGT-CTCGAGAGACTTCCTTTATCAACCGTCTAC-CAGTCAGCTTAAACCCA
65 TACCCATCAACTCAGTCCT-GAGAGACTTCCTTTATCAACCGTCTACTC-GTCAGCTTAAA-CCA
*
3373632 AGAA-ACTTCTTCATCCATAGTCT-ATCCGTCGGCTCAGTCCTAG
127 AGAAGACTTCTTCATCCATAGTCTGCT-CGTCGGCTCAGT-CTAG
* * *
3373675 GAGACTTTCTTTATCAATCGTCTACCCGTCGGCTTAGACCCGAGAGACTTCTTCAATCATTGTCT
1 GAGACTTTCTTTATCAATCATCTACCCGTCGGCTTAGACCCGAAAGACTTCTTCAATCATCGTCT
* ** ** * *
3373740 ACCCATCAGCTCAGTCCTGAGAGACTTTTTTTATCAATTGTCTACTCGTCAGCTTAGACCTAGAA
66 ACCCATCAACTCAGTCCTGAGAGACTTCCTTTATCAACCGTCTACTCGTCAGCTTAAACCAAGAA
* *
3373805 GACTTCTTCATCCATAGTCTGCTTGTCGGCTCAGTCTTG
131 GACTTCTTCATCCATAGTCTGCTCGTCGGCTCAGTCTAG
* * * * ** ** *
3373844 GAAGACTTCCTTTATCAATCGTCTACCCATTGGCTTAGACATGGGAGACTTCTTC-ATCCATAGT
1 G-AGACTTTCTTTATCAATCATCTACCCGTCGGCTTAGACCCGAAAGACTTCTTCAAT-CATCGT
* * * * ** * * * * * * * * *
3373908 TTGCTCGTCGGCTTAGTCCTGAAAGACTTCTTTTATCAATCATCTACCCGTTAGCTTAGACCTAG
64 CTACCCATCAACTCAGTCCTGAGAGACTTCCTTTATCAACCGTCTACTCGTCAGCTTAAACCAAG
* * * * * * *
3373973 GAGACTTTTTCATCCATTA-TCTACTCATCAGCTTAGTCTTGG
129 AAGACTTCTTCATCCA-TAGTCTGCTCGTCGGCTCAGTC-TAG
* * * * * *
3374015 GAGAC-TTCTTTTAGCAATCATCTACCTGTCGACTTAGACCCGAGAA-ACTTCATT-ATTTATTG
1 GAGACTTTC-TTTATCAATCATCTACCCGTCGGCTTAGACCCGA-AAGACTTC-TTCAATCATCG
* * * * ** * * * * * * *
3374077 TTTGCTCGTCGGCTCAGT-CTCGAGAGACTTCCTTTATCCATCATCTGCCCGTCAGCTTAGACCT
63 TCTACCCATCAACTCAGTCCT-GAGAGACTTCCTTTATCAACCGTCTACTCGTCAGCTTAAACCA
* * * * * * * * *
3374141 GGGAGATTTTTTCATCTATAGTCTGCTTGTCGGCTTAATCTTGG
127 AGAAGACTTCTTCATCCATAGTCTGCTCGTCGGCTCAGTC-TAG
** ** * * * *
3374185 GAGACTTTCTTTATCAATTGTCTACTTGTCGGCTTA-AACCTAGGAGACTTCTTC-ATCCATTGT
1 GAGACTTTCTTTATCAATCATCTACCCGTCGGCTTAGACCCGA-AAGACTTCTTCAAT-CATCGT
* * * * * *
3374248 TTACCCATCAGCTCAGTCC-GAGGATATTTCCTTTATCAATCGTCTGCTCGTC
64 CTACCCATCAACTCAGTCCTGA-GAGACTTCCTTTATCAACCGTCTACTCGTC
3374300 GACGTAGACT
Statistics
Matches: 505, Mismatches: 98, Indels: 43
0.78 0.15 0.07
Matches are distributed among these distances:
169 34 0.07
170 452 0.90
171 19 0.04
ACGTcount: A:0.22, C:0.26, G:0.17, T:0.35
Consensus pattern (169 bp):
GAGACTTTCTTTATCAATCATCTACCCGTCGGCTTAGACCCGAAAGACTTCTTCAATCATCGTCT
ACCCATCAACTCAGTCCTGAGAGACTTCCTTTATCAACCGTCTACTCGTCAGCTTAAACCAAGAA
GACTTCTTCATCCATAGTCTGCTCGTCGGCTCAGTCTAG
Found at i:3373741 original size:42 final size:43
Alignment explanation
Indices: 3373587--3373814 Score: 144
Period size: 43 Copynumber: 5.3 Consensus size: 43
3373577 AACTCAGTCT
* ** * *
3373587 CGAGAGACTTCCTT-TATCAACCGTCTACCAGTCAGCTTAAACC
1 CGAGAGACTT-CTTCAATCAATTGTCTACCCGTCAGCTTAGACC
* * * * * * * *
3373630 CAAGAAACTTCTTC-ATCCATAGTCTATCCGTCGGCTCAG-TC
1 CGAGAGACTTCTTCAATCAATTGTCTACCCGTCAGCTTAGACC
* * * *
3373671 CTAGGAGACTTTCTT-TATCAATCGTCTACCCGTCGGCTTAGACC
1 CGA-GAGAC-TTCTTCAATCAATTGTCTACCCGTCAGCTTAGACC
* * *
3373715 CGAGAGACTTCTTCAATC-ATTGTCTACCCATCAGCTCAGTCC
1 CGAGAGACTTCTTCAATCAATTGTCTACCCGTCAGCTTAGACC
* * ** *
3373757 TGAGAGACTTTTTTTATCAATTGTCTACTCGTCAGCTTAGA-C
1 CGAGAGACTTCTTCAATCAATTGTCTACCCGTCAGCTTAGACC
*
3373799 CTAGAAGACTTCTTCA
1 CGAG-AGACTTCTTCA
3373815 TCCATAGTCT
Statistics
Matches: 139, Mismatches: 38, Indels: 16
0.72 0.20 0.08
Matches are distributed among these distances:
41 3 0.02
42 65 0.47
43 68 0.49
44 3 0.02
ACGTcount: A:0.25, C:0.29, G:0.15, T:0.31
Consensus pattern (43 bp):
CGAGAGACTTCTTCAATCAATTGTCTACCCGTCAGCTTAGACC
Found at i:3373855 original size:255 final size:255
Alignment explanation
Indices: 3373556--3374518 Score: 773
Period size: 255 Copynumber: 3.8 Consensus size: 255
3373546 GAAAGGTTTT
* * ** *
3373556 TTCATCCATCGTCTGCCCGTCAACTCAGTCTCGAGAGACTTCCTTTATCAACCGTCTACCAGTCA
1 TTCATCCATAGTCTGCTCGTCGGCTCAGTCTCGAGAGACTTCCTTTATCAATCGTCTACCAGTCA
* *** * *
3373621 GCTTAAACCCAAGAAACTTCTTCATCCATAGTCTATC-CGTCGGCTCAGTCCTAGGAGACTTTCT
66 GCTTAGACCTGGGAGACTTCTTCATCCATAGTCT-TCTCGTCGGCTTAGTCCT-GGAGACTTTCT
*
3373685 TTATCAATCGTCTACCCGTCGGCTTAGACC-CGAGAGACTTCTTCAAT-CATTGTCTACCCATCA
129 TTATCAATCGTCTACCCGTCGGCTTAGACCTAG-GAGACTTCTTC-ATCCATTGTCTACCCATCA
* *
3373748 GCTCAGTCCTGAGAGACTTTTTTTATCAATTGTCTACTCGTC-AGCTTAGA-CCTAGAAGACTTC
192 GCTCAGTCCTGAGAGACTTTTTTTATCAATCGTCTACTCGTCGA-CTTAGACCCGAGAA-ACTTC
3373811 -
255 A
* *
3373811 TTCATCCATAGTCTGCTTGTCGGCTCAGTCTTG-GAAGACTTCCTTTATCAATCGTCTACCCA-T
1 TTCATCCATAGTCTGCTCGTCGGCTCAGTCTCGAG-AGACTTCCTTTATCAATCGTCTA-CCAGT
** * *
3373874 TGGCTTAGACATGGGAGACTTCTTCATCCATAGT-TTGCTCGTCGGCTTAGTCCTGAAAGAC-TT
64 CAGCTTAGACCTGGGAGACTTCTTCATCCATAGTCTT-CTCGTCGGCTTAGTCCTG-GAGACTTT
* ** * * *
3373937 CTTTTATCAATCATCTACCCGTTAGCTTAGACCTAGGAGACTTTTTCATCCATTATCTACTCATC
127 C-TTTATCAATCGTCTACCCGTCGGCTTAGACCTAGGAGACTTCTTCATCCATTGTCTACCCATC
* * * * * *
3374002 AGCTTAGTCTTGGGAGACTTCTTTTAGCAATCATCTAC-CTGTCGACTTAGACCCGAGAAACTTC
191 AGCTCAGTCCTGAGAGACTTTTTTTATCAATCGTCTACTC-GTCGACTTAGACCCGAGAAACTTC
3374066 A
255 A
** * * * * * *
3374067 TT-ATTTATTGTTTGCTCGTCGGCTCAGTCTCGAGAGACTTCCTTTATCCATCATCTGCCCGTCA
1 TTCATCCATAGTCTGCTCGTCGGCTCAGTCTCGAGAGACTTCCTTTATCAATCGTCTACCAGTCA
* * * * * * *
3374131 GCTTAGACCTGGGAGATTTTTTCATCTATAGTCTGCTTGTCGGCTTAATCTTGGGAGACTTTCTT
66 GCTTAGACCTGGGAGACTTCTTCATCCATAGTCTTCTCGTCGGCTTAGTCCT-GGAGACTTTCTT
* ** * *
3374196 TATCAATTGTCTACTTGTCGGCTTAAACCTAGGAGACTTCTTCATCCATTGTTTACCCATCAGCT
130 TATCAATCGTCTACCCGTCGGCTTAGACCTAGGAGACTTCTTCATCCATTGTCTACCCATCAGCT
* * ** *
3374261 CAGTCC-GAG-GA-TATTTCCTTTATCAATCGTCTGCTCGTCGACGTAGACTTGAGAGA-TTC-
195 CAGTCCTGAGAGACT-TTT--TTTATCAATCGTCTACTCGTCGACTTAGACCCGAGAAACTTCA
** * * * * * ** **
3374320 TTCATCCACCGTCTGCCCATCGGCTTAGACTCGGGAGACTT--TTTCCATCTTTCACCTACCTA-
1 TTCATCCATAGTCTGCTCGTCGGCTCAGTCTCGAGAGACTTCCTTT--ATCAATCGTCTACC-AG
* * ** * * * * * *
3374382 TCAACTTAGACTTGGGAGACTTCTTCATCCACCGTCTGCACATCGACTTAGACCCGAGAGAC-TT
63 TCAGCTTAGACCTGGGAGACTTCTTCATCCATAGTCTTCTCGTCGGCTTAGTCCTG-GAGACTTT
* * ** * * * * *** *
3374446 CCTTATCAACCGTCTGTCGGTCGACTTAGACCT-GAGAGATTTTTTCATTTTTTGTCTACCTATC
127 CTTTATCAATCGTCTACCCGTCGGCTTAGACCTAG-GAGACTTCTTCATCCATTGTCTACCCATC
3374510 AGCTCAGTC
191 AGCTCAGTC
3374519 TTAGGAGACT
Statistics
Matches: 560, Mismatches: 121, Indels: 56
0.76 0.16 0.08
Matches are distributed among these distances:
252 5 0.01
253 65 0.12
254 100 0.18
255 370 0.66
256 20 0.04
ACGTcount: A:0.22, C:0.27, G:0.17, T:0.34
Consensus pattern (255 bp):
TTCATCCATAGTCTGCTCGTCGGCTCAGTCTCGAGAGACTTCCTTTATCAATCGTCTACCAGTCA
GCTTAGACCTGGGAGACTTCTTCATCCATAGTCTTCTCGTCGGCTTAGTCCTGGAGACTTTCTTT
ATCAATCGTCTACCCGTCGGCTTAGACCTAGGAGACTTCTTCATCCATTGTCTACCCATCAGCTC
AGTCCTGAGAGACTTTTTTTATCAATCGTCTACTCGTCGACTTAGACCCGAGAAACTTCA
Found at i:3373935 original size:42 final size:42
Alignment explanation
Indices: 3373636--3373939 Score: 139
Period size: 42 Copynumber: 7.2 Consensus size: 42
3373626 AACCCAAGAA
* * * *
3373636 ACTTCTTCATCCATAGTCT-ATCCGTCGGCTCAGTCCT-AGGAG
1 ACTTCTTCATCCATAGTCTGCT-CGTCGGCTTAGACCTGA-AAG
* * * * * * *
3373678 ACTTTCTTTATCAATCGTCTACCCGTCGGCTTAGACCCGAGAG
1 AC-TTCTTCATCCATAGTCTGCTCGTCGGCTTAGACCTGAAAG
* * * * * * * *
3373721 ACTTCTTCAAT-CATTGTCTACCCATCAGCTCAGTCCTGAGAG
1 ACTTCTTC-ATCCATAGTCTGCTCGTCGGCTTAGACCTGAAAG
* * * * * *
3373763 ACTTTTTTTATCAATTGTCTACTCGTCAGCTTAGACCT-AGAAG
1 AC-TTCTTCATCCATAGTCTGCTCGTCGGCTTAGACCTGA-AAG
* * * * *
3373806 ACTTCTTCATCCATAGTCTGCTTGTCGGCTCAGTCTTGGAAG
1 ACTTCTTCATCCATAGTCTGCTCGTCGGCTTAGACCTGAAAG
* * * * * * * * **
3373848 ACTTCCTTTATCAATCGTCTACCCATTGGCTTAGACATGGGAG
1 ACTT-CTTCATCCATAGTCTGCTCGTCGGCTTAGACCTGAAAG
* *
3373891 ACTTCTTCATCCATAGTTTGCTCGTCGGCTTAGTCCTGAAAG
1 ACTTCTTCATCCATAGTCTGCTCGTCGGCTTAGACCTGAAAG
3373933 ACTTCTT
1 ACTTCTT
3373940 TTATCAATCA
Statistics
Matches: 194, Mismatches: 59, Indels: 18
0.72 0.22 0.07
Matches are distributed among these distances:
42 101 0.52
43 92 0.47
44 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.17, T:0.34
Consensus pattern (42 bp):
ACTTCTTCATCCATAGTCTGCTCGTCGGCTTAGACCTGAAAG
Found at i:3374018 original size:42 final size:42
Alignment explanation
Indices: 3373636--3374021 Score: 136
Period size: 42 Copynumber: 9.1 Consensus size: 42
3373626 AACCCAAGAA
* * * *
3373636 ACTTCTTCATCCA-TAGTCTA-TCCGTCGGCTCAGTCCTAGGAG
1 ACTTTTTCATCCATTA-TCTACT-CGTCAGCTTAGTCCTGGGAG
* * ** * * * * *
3373678 ACTTTCTTTATCAATCGTCTACCCGTCGGCTTAGACCCGAGAG
1 ACTTT-TTCATCCATTATCTACTCGTCAGCTTAGTCCTGGGAG
* * * * * *
3373721 ACTTCTTCAAT-CATTGTCTACCCATCAGCTCAGTCCTGAGAG
1 ACTTTTTC-ATCCATTATCTACTCGTCAGCTTAGTCCTGGGAG
* * * * * *
3373763 ACTTTTTTTATCAATTGTCTACTCGTCAGCTTAGACCTAGAAG
1 AC-TTTTTCATCCATTATCTACTCGTCAGCTTAGTCCTGGGAG
* * * * * * *
3373806 ACTTCTTCATCCA-TAGTCTGCTTGTCGGCTCAGTCTTGGAAG
1 ACTTTTTCATCCATTA-TCTACTCGTCAGCTTAGTCCTGGGAG
* ** * * ** * *
3373848 ACTTCCTTT-ATCAATCGTCTACCCATTGGCTTAGACATGGGAG
1 ACTT--TTTCATCCATTATCTACTCGTCAGCTTAGTCCTGGGAG
* * * * **
3373891 ACTTCTTCATCCA-TAGTTTGCTCGTCGGCTTAGTCCTGAAAG
1 ACTTTTTCATCCATTA-TCTACTCGTCAGCTTAGTCCTGGGAG
* * * * * * *
3373933 ACTTCTTTTATCAATCATCTACCCGTTAGCTTAGACCTAGGAG
1 ACTT-TTTCATCCATTATCTACTCGTCAGCTTAGTCCTGGGAG
* *
3373976 ACTTTTTCATCCATTATCTACTCATCAGCTTAGTCTTGGGAG
1 ACTTTTTCATCCATTATCTACTCGTCAGCTTAGTCCTGGGAG
3374018 ACTT
1 ACTT
3374022 CTTTTAGCAA
Statistics
Matches: 241, Mismatches: 89, Indels: 28
0.67 0.25 0.08
Matches are distributed among these distances:
41 3 0.01
42 123 0.51
43 112 0.46
44 3 0.01
ACGTcount: A:0.22, C:0.27, G:0.17, T:0.35
Consensus pattern (42 bp):
ACTTTTTCATCCATTATCTACTCGTCAGCTTAGTCCTGGGAG
Found at i:3374186 original size:42 final size:43
Alignment explanation
Indices: 3374140--3374221 Score: 114
Period size: 43 Copynumber: 1.9 Consensus size: 43
3374130 AGCTTAGACC
* *
3374140 TGGGAGA-TTT-TTTCATCTATAGTCTGCTTGTCGGCTTAATCT
1 TGGGAGACTTTCTTT-ATCAATAGTCTACTTGTCGGCTTAATCT
*
3374182 TGGGAGACTTTCTTTATCAATTGTCTACTTGTCGGCTTAA
1 TGGGAGACTTTCTTTATCAATAGTCTACTTGTCGGCTTAA
3374222 ACCTAGGAGA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
42 7 0.20
43 25 0.71
44 3 0.09
ACGTcount: A:0.18, C:0.17, G:0.21, T:0.44
Consensus pattern (43 bp):
TGGGAGACTTTCTTTATCAATAGTCTACTTGTCGGCTTAATCT
Found at i:3374443 original size:42 final size:41
Alignment explanation
Indices: 3374288--3374663 Score: 141
Period size: 42 Copynumber: 8.9 Consensus size: 41
3374278 CTTTATCAAT
* *
3374288 CGTCTGCTCGTCGACGTAGACTTGAGAGA-TTCTTCATCCAC
1 CGTCTGC-CATCGACTTAGACTTGAGAGACTTCTTCATCCAC
* * * * ***
3374329 CGTCTGCCCATCGGCTTAGACTCGGGAGACTTTTTCCATCTTT
1 CGTCTG-CCATCGACTTAGACTTGAGAGACTTCTT-CATCCAC
** * * *
3374372 CACCTACCTATCAACTTAGACTTGGGAGACTTCTTCATCCAC
1 CGTCTGCC-ATCGACTTAGACTTGAGAGACTTCTTCATCCAC
** *
3374414 CGTCTGCACATCGACTTAGACCCGAGAGACTTCCTT-ATCAAC
1 CGTCTGC-CATCGACTTAGACTTGAGAGACTT-CTTCATCCAC
** * * * ****
3374456 CGTCTGTCGGTCGACTTAGACCTGAGAGATTTTTTCATTTTT
1 CGTCTG-CCATCGACTTAGACTTGAGAGACTTCTTCATCCAC
* * * * * *
3374498 TGTCTACCTATC-AGCTCAGTCTT-AGGAGACTTCCTTTATCAAC
1 CGTCTGCC-ATCGA-CTTAGACTTGA-GAGACTT-CTTCATCCAC
* * * * ***
3374541 CATCTGCCTATCGGCTTAGACCT-AGGAGACTTTTTCATCTTT
1 CGTCTGCC-ATCGACTTAGACTTGA-GAGACTTCTTCATCCAC
* * * *
3374583 CGTCTGCCCGTTGGCTTAGACCTGAGAGACTTCTTCATCCAC
1 CGTCTG-CCATCGACTTAGACTTGAGAGACTTCTTCATCCAC
* * * * * *
3374625 CATCTACCTATTGGCTCAGACTTGGGAGACTTCTTCATC
1 CGTCTGCC-ATCGACTTAGACTTGAGAGACTTCTTCATC
3374664 TTTTTATTTG
Statistics
Matches: 244, Mismatches: 75, Indels: 31
0.70 0.21 0.09
Matches are distributed among these distances:
41 29 0.12
42 150 0.61
43 65 0.27
ACGTcount: A:0.20, C:0.29, G:0.18, T:0.33
Consensus pattern (41 bp):
CGTCTGCCATCGACTTAGACTTGAGAGACTTCTTCATCCAC
Done.