Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold39
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4724573
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 178835 characters in sequence are not A, C, G, or T
File 7 of 27
Found at i:915061 original size:159 final size:154
Alignment explanation
Indices: 914890--915391 Score: 369
Period size: 159 Copynumber: 3.2 Consensus size: 154
914880 TGTGGTGTCT
* * * * *
914890 AATCTTGAAAAGAACAGGGATTGGTGTGAGTATTCATGTTTGTCATATTTTAGTGACAAACTTCG
1 AATCTTGAAAAGAA-AGGGACT-GT-T-AATATTCATGTATGTCATATTTAAG-G-CAAACTTAG
914955 ATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCTTCAATGTCATGTATC
60 ATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCTTCAATGTCATGTATC
915020 CTAATGAAGGGAATGTGTTTTTGGCTTCCC
125 CTAATGAAGGGAATGTGTTTTTGGCTTCCC
* * * * * *
915050 AGTCTTG-AAAGAATGGAGACTGTTACTTTAATCCAT-TCATGTC-TCATTTGAGGCATGAGCTT
1 AATCTTGAAAAGAAAGG-GACTGTTA--AT-ATTCATGT-ATGTCAT-ATTTAAGGCA--AACTT
* * * * * *
915112 AGACTCTA-CAAAAATTGGTGG-GA-AAAAGCCTTTCTTGTGAA-ACCAAAGCTTCAGTGTGATG
58 AGATTCTATCAAAAA-TGGTGGAAAGAAAAGCTTTTCTTG-CAACACCAAAGCTTCAATGTCATG
* * * * *
915173 TATCCTAATG-AGAAGACTATGTTTATGG-TGT-CA
121 TATCCTAATGAAG-GGAATGTGTTTTTGGCT-TCCC
* * * * *
915206 AATCCTGAAAAGAATAGGAACTAGTATAAATATTCATGTCTATCATATTTAAGAGCCAAACTTTG
1 AATCTTGAAAAGAA-AGGGACT-GT-T-AATATTCATGTATGTCATATTTAAG-G-CAAACTTAG
* ** * * * * *
915271 ATTTTATCAAAGGTGGCGGAAAGAAAAGCTTTTATT-CGGACACCAAAACATCAATGTCATGTAT
60 ATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGC-AACACCAAAGCTTCAATGTCATGTAT
915335 CCTAATGAAGGGAATGTGTTTTTGGCTTCCC
124 CCTAATGAAGGGAATGTGTTTTTGGCTTCCC
*
915366 AATCTTGAAAAGAATGGAGACTGTTA
1 AATCTTGAAAAGAAAGG-GACTGTTA
915392 TGAGAATCGA
Statistics
Matches: 259, Mismatches: 53, Indels: 63
0.69 0.14 0.17
Matches are distributed among these distances:
156 10 0.04
157 94 0.36
158 32 0.12
159 96 0.37
160 27 0.10
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.32
Consensus pattern (154 bp):
AATCTTGAAAAGAAAGGGACTGTTAATATTCATGTATGTCATATTTAAGGCAAACTTAGATTCTA
TCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCTTCAATGTCATGTATCCTAATG
AAGGGAATGTGTTTTTGGCTTCCC
Found at i:915242 original size:316 final size:317
Alignment explanation
Indices: 914773--915391 Score: 850
Period size: 316 Copynumber: 2.0 Consensus size: 317
914763 AATCCATGTT
* *
914773 TGTCTTATTTGAGGCATGAACTTAGACTTTACAAAAATGTAAGGAAAAATGCCTTTCTTGCGAAA
1 TGTCTCATTTGAGGCATGAACTTAGACTCTACAAAAATGTAAGGAAAAATGCCTTTCTTGCGAAA
* * * * *
914838 CCGAAGCATCAATATGATTTATCCTAAGGAGAAAACTATGTTTGTGGTGTCTAATCTTGAAAAGA
66 CCAAAGCATCAATATGATGTATCCTAAGGAGAAAACTATGTTTATGGTGTCAAATCCTGAAAAGA
* * * * * * * * * *
914903 ACAGGGATTGGTGTGAGTATTCATGTTTGTCATATTTTAGTGACAAACTTCGATTCTATCAAAAA
131 ACAGGAACTAGTATAAATATTCATGTCTATCATATTTAAGAGACAAACTTCGATTCTATCAAAAA
* * * *
914968 TGGTGGAAAGAAAAGCTTTTCTT-GCAACACCAAAGCTTCAATGTCATGTATCCTAATGAAGGGA
196 TGGCGGAAAGAAAAGCTTTTATTCG-AACACCAAAACATCAATGTCATGTATCCTAATGAAGGGA
*
915032 ATGTGTTTTTGGCTTCCCAGTCTTG-AAAGAATGGAGACTGTTACTTTAATCCATTCA
260 ATGTGTTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACTTTAATCCATTCA
* * *
915089 TGTCTCATTTGAGGCATGAGCTTAGACTCTACAAAAATTGGT-GGGAAAAA-GCCTTTCTTGTGA
1 TGTCTCATTTGAGGCATGAACTTAGACTCTACAAAAA-T-GTAAGGAAAAATGCCTTTCTTGCGA
* * * * *
915152 AACCAAAGCTTCAGTGTGATGTATCCTAATGAGAAGACTATGTTTATGGTGTCAAATCCTGAAAA
64 AACCAAAGCATCAATATGATGTATCCTAAGGAGAAAACTATGTTTATGGTGTCAAATCCTGAAAA
* * * *
915217 GAATAGGAACTAGTATAAATATTCATGTCTATCATATTTAAGAGCCAAACTTTGATTTTATCAAA
129 GAACAGGAACTAGTATAAATATTCATGTCTATCATATTTAAGAGACAAACTTCGATTCTATCAAA
** *
915282 GGTGGCGGAAAGAAAAGCTTTTATTCGGACACCAAAACATCAATGTCATGTATCCTAATGAAGGG
194 AATGGCGGAAAGAAAAGCTTTTATTCGAACACCAAAACATCAATGTCATGTATCCTAATGAAGGG
915347 AATGTGTTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTA
259 AATGTGTTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTA
915392 TGAGAATCGA
Statistics
Matches: 262, Mismatches: 37, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
316 233 0.89
317 27 0.10
318 2 0.01
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.32
Consensus pattern (317 bp):
TGTCTCATTTGAGGCATGAACTTAGACTCTACAAAAATGTAAGGAAAAATGCCTTTCTTGCGAAA
CCAAAGCATCAATATGATGTATCCTAAGGAGAAAACTATGTTTATGGTGTCAAATCCTGAAAAGA
ACAGGAACTAGTATAAATATTCATGTCTATCATATTTAAGAGACAAACTTCGATTCTATCAAAAA
TGGCGGAAAGAAAAGCTTTTATTCGAACACCAAAACATCAATGTCATGTATCCTAATGAAGGGAA
TGTGTTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACTTTAATCCATTCA
Found at i:916859 original size:947 final size:949
Alignment explanation
Indices: 915089--917325 Score: 2839
Period size: 947 Copynumber: 2.3 Consensus size: 949
915079 AATCCATTCA
* *
915089 TGTCTCATTTGAGGCATGAGCTTAGACTCTACAAAAATTGGTGGG-AAAAAGCCTTTCTTGTGAA
1 TGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGT-AA
* * * *
915153 ACCAAAGC-TTCAGTGTGATGTATCCTAATGAGAAGACTATGTTTATGGTGTCAAATCCTGAAAA
65 ACCAAAGCATT-AATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAA
* * * * * * *
915217 GAATAGGAACTAGTATAAATATTCATGTCTATCATATTTAAGAGCCAAACTTTGATTTTATCAAA
129 GAA-AGGGATTAGTATAAGTATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAA
** * *
915282 GGTGGCGGAAAGAAAAGCTTTTATTCGGACACCAAAACATCAATGTCATGTATCCTAATGAAGGG
193 AATGGTGGAAAGAAAAGCTTTTCTTC-GACACC-AAACATCAATGTCATGTATCCTAATGAAGGG
* *
915347 AATGTGTTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGGTTGTCTT
256 AA-GTG---TTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTCGTCTT
* * *
915412 ATTTAAAGG-ATAAAGTTTGATTTTAAGAAAAATAGGGTAAAGAAAAGATTTCCATGCAAAAAAA
317 ATTT-AAGGTATGAAGTTTGATTTAAAGAAAAATAAGGTAAAGAAAAGATTTCCATGCAAAAAAA
* * * *
915476 ATCATTAATATCATTTACCTTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
381 ATCATTAATATCATTTACCTTAATAAGAAGAATGTGTTTATAATGCCTAATCACAAAAAGAATGA
** * * * *
915541 AGATCGTCGTTAGAATCCATGTTTGTCTCATTTGAGGCATGACCTTAGACTTTAAGAAAATTTGT
446 AGATCGTCACTAGAATCCATGTTTGTCTCATTTGACGCATGAACTTAGACTTTAACAAAATTGGT
* ** * *
915606 GGGAAAAATACCTTTCTTGTGAACCTAAAGTATCAATATTGTGTATCCTAATTAGAAGACTATGT
511 GGGAAAAACACCTTTCTTGAAAACCTAAAGTATCAATATTGTATATCCTAATGAGAAGACTATGT
* * *
915671 TTATGGTGCCTAATCCTCAAAAAAAAGATTGGGGATTAGTATGAGTATTCATGTTTGTCCTATTA
576 TTATGCTGCCTAATCCTCAAAAAAAAGATTAGGGATCAGTATGAGTATTCATGTTTGTCCTATTA
* * * ** * *
915736 AAGAGACAAACTTTAATTCTTTCAAAAATAGTGGAAAAAAAAGCTTTTCTTATATCACCAAAGCA
641 AAGACACAAACTTTAATTCTTTCAAAAATAGTAGAAAAAAAAGCTATTCCGAGATCACCAAAACA
* * * *
915801 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGCTTCCCAGCCTTGAAAAGAGTTGAGA
706 TCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCCAGCCTTGAAAAAAATAGAGA
** *
915866 CTATTACAAGAATCGAGGCTTGTCTTATTTAAGGTATGAACTTTGATTTTAAGGAAAATAGGGCA
771 CTATTACAAGAATCGAGGCTCATCTTATTTAAGGTATGAACTTTGATTTCAAGGAAAATAGGGCA
* *
915931 AAGGAAAGAC-CTT-CTTACAAAAGAAAATCATCAATATCATTTATCCTAACGAGGAAAATGTGT
836 AA-GAAA-ACACTTCCATACAAAAGAAAATCATCAACATCATTTATCCTAACGAGGAAAATGTGT
* ** * *
915994 TTATAGTGCCTAATCTTAAAATG-AATGATGACCTTTACTAGAATCTATGTT
899 TTATAGAGCCTAATCACAAAA-GAAATGAAGACCATTACTAGAATCTATGTT
* * *
916045 TGTCTCATTTGAGGCACGAACTTAGACTTTATAAAAATTGGTGGGAAAAAAGCCTTTCCTGTAAA
1 TGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGTAAA
* * *
916110 TCCAAAGCATTAATATGATGTATCTTAATGAGTAGAATATGTTTATGGTGCCTAATCCTGAAAAG
66 -CCAAAGCATTAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAG
* *
916175 AACAGGGATTAGTATAAGTGTTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCGT-TCAAA
130 AA-AGGGATTAGTATAAGTATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTC-TATCAAA
* * * * *
916239 AACGGTGTAAAGAAAAACTTTTCTTGCGACACCAAAGCTTCAATGTCATGCATCCTAATGAAGGG
193 AATGGTGGAAAGAAAAGCTTTTCTT-CGACACCAAA-CATCAATGTCATGTATCCTAATGAAGGG
* * * *
916304 AA-TG-TGGCTTCCCAATCTTGAAAAGAGTGGAAACTATTATGAGAATCGATTCTCGTCTTATTT
256 AAGTGTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTCGTCTTATTT
* * *
916367 AAGGTATGAATTTTGATTTAAAGGAAAATAAGGTAAAGAAAAGATTTTCATGCAAAAGAAAATCA
321 AAGGTATGAAGTTTGATTTAAAGAAAAATAAGGTAAAGAAAAGATTTCCATGCAAAA-AAAATCA
* *
916432 TTAATATCATTTATCC-TAATAAGAAGAATGTGTTTATAATGCCTAATCACAAAAAGACTGATGA
385 TTAATATCATTTA-CCTTAATAAGAAGAATGTGTTTATAATGCCTAATCACAAAAAGAATGAAGA
* * *
916496 TCTTTACTAGAATGCATGTTTGTCTCATTTGACGCATGAACTTAGACTTT-ACAAAATTGGT-GG
449 TCGTCACTAGAATCCATGTTTGTCTCATTTGACGCATGAACTTAGACTTTAACAAAATTGGTGGG
* *
916559 AAAAACACTTTTCTTGCAAAACC-AAAGCT-TCAATA-TGATATATCCTAATGAGAAGCCTATGT
514 AAAAACACCTTTCTTG-AAAACCTAAAG-TATCAATATTG-TATATCCTAATGAGAAGACTATGT
* *** * *
916621 TTGTGCTGCCTAAT-CTTGGAAAAAA-A-TAGTGATCAGTATG-GTTATTCATGTTTGTCTTATT
576 TTATGCTGCCTAATCCTCAAAAAAAAGATTAGGGATCAGTATGAG-TATTCATGTTTGTCCTATT
* * * * *
916682 TAAGACATAAACTTTGATTCTTTCAAAAAT-GCTAGAAAGAAAAGCTATTCACGCGA-CACCAAA
640 AAAGACACAAACTTTAATTCTTTCAAAAATAG-TAGAAAAAAAAGCTATTC-CGAGATCACCAAA
*
916745 ACATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAAAATAG
703 ACATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCCAGCCTTGAAAAAAATAG
**
916810 AGACTATTATGAGAATCGATGG-TCATCTTATTTAAGGTATGAACTTTGATTTCAAGGAAAATAG
768 AGACTATTACAAGAATCGA-GGCTCATCTTATTTAAGGTATGAACTTTGATTTCAAGGAAAATAG
* * * * * **
916874 GGTAAAGAAAACATTTCCATGCAAAAGAAAATCATTAACATCATTTATCCTAATGAGGCGAATGT
832 GGCAAAGAAAACACTTCCATACAAAAGAAAATCATCAACATCATTTATCCTAACGAGGAAAATGT
* *
916939 GTTTATTGAGCCTAATCACAAAAGAAATGAAGATCATTACTAGAATCTATGTT
897 GTTTATAGAGCCTAATCACAAAAGAAATGAAGACCATTACTAGAATCTATGTT
* * * * * * *
916992 TGTCTCATTTGAGGCATTAACTTAGACTTTACGAAAATTGGTGAGAGAAATGTCTTTCTTGCAAA
1 TGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTG-TAA
* * *
917057 ACCAAAGCATCAATATTG-TGTATCCTAATGACAAGACTATGCTTATGGTGCCTAATCCTGAAAA
65 ACCAAAGCATTAATA-TGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAA
* *
917121 -AAAGAGGATTAGTACAAGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAA
129 GAAAG-GGATTAGTATAAGTATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAA
* * *
917185 AATGATGGACAGAAAAGCTTTTCTTACGACACCAAACATCAATGTCATGTATCGTAATGAAGGGA
193 AATGGTGGAAAGAAAAGCTTTTCTT-CGACACCAAACATCAATGTCATGTATCCTAATGAAGGGA
* *
917250 ATGTGTTTTTGGCTTCCTAATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTCGTCTTA
257 A-GTG---TTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTCGTCTTA
917315 TTTAAGGTATG
318 TTTAAGGTATG
917326 TGTTAGGATC
Statistics
Matches: 1106, Mismatches: 146, Indels: 63
0.84 0.11 0.05
Matches are distributed among these distances:
945 32 0.03
946 95 0.09
947 390 0.35
948 9 0.01
949 10 0.01
950 63 0.06
951 174 0.16
952 105 0.09
953 2 0.00
955 2 0.00
956 47 0.04
957 173 0.16
958 4 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (949 bp):
TGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGTAAA
CCAAAGCATTAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGA
AAGGGATTAGTATAAGTATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAAT
GGTGGAAAGAAAAGCTTTTCTTCGACACCAAACATCAATGTCATGTATCCTAATGAAGGGAAGTG
TTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTCGTCTTATTTAAGGT
ATGAAGTTTGATTTAAAGAAAAATAAGGTAAAGAAAAGATTTCCATGCAAAAAAAATCATTAATA
TCATTTACCTTAATAAGAAGAATGTGTTTATAATGCCTAATCACAAAAAGAATGAAGATCGTCAC
TAGAATCCATGTTTGTCTCATTTGACGCATGAACTTAGACTTTAACAAAATTGGTGGGAAAAACA
CCTTTCTTGAAAACCTAAAGTATCAATATTGTATATCCTAATGAGAAGACTATGTTTATGCTGCC
TAATCCTCAAAAAAAAGATTAGGGATCAGTATGAGTATTCATGTTTGTCCTATTAAAGACACAAA
CTTTAATTCTTTCAAAAATAGTAGAAAAAAAAGCTATTCCGAGATCACCAAAACATCAATGTCAT
GTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCCAGCCTTGAAAAAAATAGAGACTATTACAAG
AATCGAGGCTCATCTTATTTAAGGTATGAACTTTGATTTCAAGGAAAATAGGGCAAAGAAAACAC
TTCCATACAAAAGAAAATCATCAACATCATTTATCCTAACGAGGAAAATGTGTTTATAGAGCCTA
ATCACAAAAGAAATGAAGACCATTACTAGAATCTATGTT
Found at i:916908 original size:476 final size:473
Alignment explanation
Indices: 915089--917325 Score: 2577
Period size: 476 Copynumber: 4.7 Consensus size: 473
915079 AATCCATTCA
* * * **
915089 TGTCTCATTTGAGGCATGAGCTTAGACTCTACAAAAATTGGTGGGAAAAAGCCTTTCTTGTGAAA
1 TGTCTCATTTGAGGCATGAACTTAGACTTTAC-AAAATTGGTGGGAAAAAACCTTTCTTGCAAAA
* * * * *
915154 CCAAAGCTTCAGTGTGATGTATCCTAATGAGAAGACTATGTTTATGGTGTCAAATCCTGAAAAGA
65 CCAAAGCTTCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAAA
* * * * * * *
915219 ATAGGAACTAGTATAAATATTCATGTCTATCATATTTAAGAGCCAAACTTTGATT-TTATCAAAG
130 ATAGG-ATTAGTAT-AGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTT-TCAAAA
* *
915283 GTGGC-GGAAAGAAAAGCTTTT-ATTCGGACACCAAAACATCAATGTCATGTATCCTAATGAAGG
192 AT-GCTGGAAAGAAAAGCTTTTCATGC-GACACCAAAACATCAATGTCATGTATCCTAATGAAGG
* *
915346 GAATGTGTTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGGTTGTCT
255 GAATGTGTTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATCGATGGTCGTCT
* * * *
915411 TATTTAAAGG-ATAAAGTTTGATTTTAAGAAAAATAGGGTAAAGAAAAGATTTCCATGCAAAA-A
320 TATTT-AAGGTATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAACATTTCCATGCAAAAGA
* * * *
915474 AAATCATTAATATCATTTA-CCTTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
384 AAATCATTAATATCATTTATCC-TAATAAGAAGAATGTGTTTATAATGCCTAATCACAAAAAGAA
* *** *
915538 TGAAGATCGTCGTTAGAATCCATGTT
448 TGAAGATCTTTACTAGAATCTATGTT
* * * **
915564 TGTCTCATTTGAGGCATGACCTTAGACTTTAAGAAAATTTGTGGGAAAAATACCTTTCTTG-TGA
1 TGTCTCATTTGAGGCATGAACTTAGACTTT-ACAAAATTGGTGGGAAAAA-ACCTTTCTTGCAAA
* *
915628 ACCTAAAG-TATCAATATTG-TGTATCCTAATTAGAAGACTATGTTTATGGTGCCTAATCCTCAA
64 ACC-AAAGCT-TCAATA-TGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT--G
* * * *
915691 AAAAAAGATTGGGGATTAGTATGAGTATTCATGTTTGTCCTATTAAAGAGACAAACTTTAATTCT
124 AAAAAA-A-T-AGGATTAGTAT-AGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
* *** *
915756 TTCAAAAATAG-TGGAAAAAAAAGCTTTTC-TTATATCACCAAAGCATCAATGTCATGTATCCTA
185 TTCAAAAAT-GCTGGAAAGAAAAGCTTTTCATGCGA-CACCAAAACATCAATGTCATGTATCCTA
** * * **
915819 ATGAAGGGAATGTGTTTTTGGCTTCCCAGCCTTGAAAAGAGTTGAGACTATTACAAGAATCGA-G
248 ATGAAGGGAATGTGTTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATCGATG
* * * *
915883 GCTTGTCTTATTTAAGGTATGAACTTTGATTTTAAGGAAAATAGGGCAAAGGAAAGAC-CTT-CT
313 G-TCGTCTTATTTAAGGTATGAACTTTGATTTTAAGGAAAATAGGGTAAA-GAAA-ACATTTCCA
* * * * * *
915946 TACAAAAGAAAATCATCAATATCATTTATCCTAACGAGGAA-AATGTGTTTATAGTGCCTAATCT
375 TGCAAAAGAAAATCATTAATATCATTTATCCTAA-TAAGAAGAATGTGTTTATAATGCCTAATCA
* * * *
916010 TAAAATGAATGATGACCTTTACTAGAATCTATGTT
439 CAAAAAGAATGAAGATCTTTACTAGAATCTATGTT
* * * *
916045 TGTCTCATTTGAGGCACGAACTTAGACTTTATAAAAATTGGTGGGAAAAAAGCCTTTCCTGTAAA
1 TGTCTCATTTGAGGCATGAACTTAGACTTTA-CAAAATTGGTGGGAAAAAA-CCTTTCTTGCAAA
* * * *
916110 TCCAAAGCATT-AATATGATGTATCTTAATGAGTAGAATATGTTTATGGTGCCTAATCCTGAAAA
64 ACCAAAGC-TTCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAA
* * * *
916174 GAACAGGGATTAGTATAAGTGTTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCGTTCAAA
128 AAATA-GGATTAGTAT-AGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTTTCAAA
* * * * * * * *
916239 AACGGTGTAAAGAAAAACTTTTCTTGCGACACCAAAGCTTCAATGTCATGCATCCTAATGAAGGG
191 AATGCTGGAAAGAAAAGCTTTTCATGCGACACCAAAACATCAATGTCATGTATCCTAATGAAGGG
* * **
916304 AA--TG----TGGCTTCCCAATCTTGAAAAGAGTGGAAACTATTATGAGAATCGATTCTCGTCTT
256 AATGTGTTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATCGATGGTCGTCTT
* * * * *
916363 ATTTAAGGTATGAATTTTGATTTAAAGGAAAATAAGGTAAAGAAAAGATTTTCATGCAAAAGAAA
321 ATTTAAGGTATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAACATTTCCATGCAAAAGAAA
*
916428 ATCATTAATATCATTTATCCTAATAAGAAGAATGTGTTTATAATGCCTAATCACAAAAAGACTGA
386 ATCATTAATATCATTTATCCTAATAAGAAGAATGTGTTTATAATGCCTAATCACAAAAAGAATGA
*
916493 TGATCTTTACTAGAATGC-ATGTT
451 AGATCTTTACTAGAAT-CTATGTT
* *
916516 TGTCTCATTTGACGCATGAACTTAGACTTTACAAAATTGGT-GGAAAAACACTTTTCTTGCAAAA
1 TGTCTCATTTGAGGCATGAACTTAGACTTTACAAAATTGGTGGGAAAAA-ACCTTTCTTGCAAAA
* * * * *
916580 CCAAAGCTTCAATATGATATATCCTAATGAGAAGCCTATGTTTGTGCTGCCTAATCTTGGAAAAA
65 CCAAAGCTTCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT-GAAAAA
* * * *
916645 AATAGTGATCAGTATGGTTATTCATGTTTGTCTTATTTAAGACATAAACTTTGATTCTTTCAAAA
129 AATAG-GATTAGTATAG-TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTTTCAAAA
* * * *
916710 ATGCTAGAAAGAAAAGCTATTCACGCGACACCAAAACATCAATGTCATGTATCCTAATGAAAGGA
192 ATGCTGGAAAGAAAAGCTTTTCATGCGACACCAAAACATCAATGTCATGTATCCTAATGAAGGGA
* * * *
916775 ATGTGTTTTTGGCTTCCCAGTCTTGAAAAAAATAGAGACTATTATGAGAATCGATGGTCATCTTA
257 ATGTGTTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATCGATGGTCGTCTTA
*
916840 TTTAAGGTATGAACTTTGATTTCAAGGAAAATAGGGTAAAGAAAACATTTCCATGCAAAAGAAAA
322 TTTAAGGTATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAACATTTCCATGCAAAAGAAAA
* * ** *
916905 TCATTAACATCATTTATCCTAATGAGGCGAATGTGTTTATTGA-GCCTAATCAC-AAAAGAAATG
387 TCATTAATATCATTTATCCTAATAAGAAGAATGTGTTTA-TAATGCCTAATCACAAAAAG-AATG
*
916968 AAGATCATTACTAGAATCTATGTT
450 AAGATCTTTACTAGAATCTATGTT
* * ***
916992 TGTCTCATTTGAGGCATTAACTTAGACTTTACGAAAATTGGTGAGAGAAATGTCTTTCTTGCAAA
1 TGTCTCATTTGAGGCATGAACTTAGACTTTAC-AAAATTGGTGGGA-AAAAACCTTTCTTGCAAA
* * *
917057 ACCAAAGCATCAATATTG-TGTATCCTAATGACAAGACTATGCTTATGGTGCCTAATCCTGAAAA
64 ACCAAAGCTTCAATA-TGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAA
* * * *
917121 AAAGAGGATTAGTACAAGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAA
128 AAATAGGATTAGTA-TAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTTTCAAAA
* * * * *
917186 ATGATGGACAGAAAAGCTTTTCTTACGACACC-AAACATCAATGTCATGTATCGTAATGAAGGGA
192 ATGCTGGAAAGAAAAGCTTTTCATGCGACACCAAAACATCAATGTCATGTATCCTAATGAAGGGA
* * * *
917250 ATGTGTTTTTGGCTTCCTAATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTCGTCTTA
257 ATGTGTTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATCGATGGTCGTCTTA
917315 TTTAAGGTATG
322 TTTAAGGTATG
917326 TGTTAGGATC
Statistics
Matches: 1495, Mismatches: 213, Indels: 108
0.82 0.12 0.06
Matches are distributed among these distances:
468 2 0.00
469 67 0.04
470 133 0.09
471 194 0.13
472 3 0.00
475 155 0.10
476 338 0.23
477 130 0.09
478 69 0.05
479 18 0.01
480 198 0.13
481 178 0.12
482 9 0.01
483 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (473 bp):
TGTCTCATTTGAGGCATGAACTTAGACTTTACAAAATTGGTGGGAAAAAACCTTTCTTGCAAAAC
CAAAGCTTCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAAAA
TAGGATTAGTATAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTTTCAAAAATGC
TGGAAAGAAAAGCTTTTCATGCGACACCAAAACATCAATGTCATGTATCCTAATGAAGGGAATGT
GTTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATCGATGGTCGTCTTATTTA
AGGTATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAACATTTCCATGCAAAAGAAAATCAT
TAATATCATTTATCCTAATAAGAAGAATGTGTTTATAATGCCTAATCACAAAAAGAATGAAGATC
TTTACTAGAATCTATGTT
Found at i:917996 original size:33 final size:33
Alignment explanation
Indices: 917959--918058 Score: 200
Period size: 33 Copynumber: 3.0 Consensus size: 33
917949 CCTATAAATT
917959 TGAGTTTCCAACAACTGAACAAGAAGAGAACCA
1 TGAGTTTCCAACAACTGAACAAGAAGAGAACCA
917992 TGAGTTTCCAACAACTGAACAAGAAGAGAACCA
1 TGAGTTTCCAACAACTGAACAAGAAGAGAACCA
918025 TGAGTTTCCAACAACTGAACAAGAAGAGAACCA
1 TGAGTTTCCAACAACTGAACAAGAAGAGAACCA
918058 T
1 T
918059 TAAGAAACAT
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 67 1.00
ACGTcount: A:0.45, C:0.21, G:0.18, T:0.16
Consensus pattern (33 bp):
TGAGTTTCCAACAACTGAACAAGAAGAGAACCA
Found at i:919490 original size:27 final size:27
Alignment explanation
Indices: 919451--919509 Score: 100
Period size: 27 Copynumber: 2.2 Consensus size: 27
919441 TGAAGATGAT
919451 GATGATGACAATGATAAAGTTGACTCA
1 GATGATGACAATGATAAAGTTGACTCA
* *
919478 GATGATGATAATGATGAAGTTGACTCA
1 GATGATGACAATGATAAAGTTGACTCA
919505 GATGA
1 GATGA
919510 AGAAATGGAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.39, C:0.08, G:0.25, T:0.27
Consensus pattern (27 bp):
GATGATGACAATGATAAAGTTGACTCA
Found at i:921535 original size:32 final size:32
Alignment explanation
Indices: 921489--921565 Score: 127
Period size: 32 Copynumber: 2.4 Consensus size: 32
921479 GGCTCAATGT
*
921489 ACAGTGATGAACAGTGATGTATCGATACATGA
1 ACAGTGATGAACAGTGATATATCGATACATGA
*
921521 ACAGCGATGAACAGTGATATATCGATACATGA
1 ACAGTGATGAACAGTGATATATCGATACATGA
*
921553 ATAGTGATGAACA
1 ACAGTGATGAACA
921566 ATGAAAATGA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 41 1.00
ACGTcount: A:0.40, C:0.13, G:0.23, T:0.23
Consensus pattern (32 bp):
ACAGTGATGAACAGTGATATATCGATACATGA
Found at i:921689 original size:21 final size:21
Alignment explanation
Indices: 921649--921689 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
921639 GTCAACCTTG
*
921649 TGTATTGATACCAATAGTATA
1 TGTATTGATACCAACAGTATA
921670 TGTATTGATA-CAACACGTAT
1 TGTATTGATACCAACA-GTAT
921690 TTTTACTTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.37
Consensus pattern (21 bp):
TGTATTGATACCAACAGTATA
Found at i:925240 original size:16 final size:16
Alignment explanation
Indices: 925219--925250 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
925209 AATTTTCCAA
925219 AATGTATCGATACATC
1 AATGTATCGATACATC
925235 AATGTATCGATACATC
1 AATGTATCGATACATC
925251 TGAAAAACCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.31
Consensus pattern (16 bp):
AATGTATCGATACATC
Found at i:927968 original size:20 final size:20
Alignment explanation
Indices: 927943--927996 Score: 76
Period size: 20 Copynumber: 2.7 Consensus size: 20
927933 GTTTGAAGCA
927943 ATGTATCGATACAAT-T-CATC
1 ATGTATCGATACAATGTGC--C
927963 ATGTATCGATACAATGTGCC
1 ATGTATCGATACAATGTGCC
927983 ATGTATCGATACAA
1 ATGTATCGATACAA
927997 ATAGTGGTAG
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
20 30 0.94
21 1 0.03
22 1 0.03
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (20 bp):
ATGTATCGATACAATGTGCC
Found at i:928070 original size:19 final size:19
Alignment explanation
Indices: 928025--928080 Score: 67
Period size: 19 Copynumber: 2.9 Consensus size: 19
928015 CTGCCAGTTT
**
928025 CATGTATCAATACAATTGGG
1 CATGTATCAATACAA-TGAA
928045 CATGTATCAATACAATGAA
1 CATGTATCAATACAATGAA
* *
928064 TATGTATCGATACAATG
1 CATGTATCAATACAATG
928081 TATGGATATA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 17 0.53
20 15 0.47
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.30
Consensus pattern (19 bp):
CATGTATCAATACAATGAA
Found at i:928687 original size:22 final size:21
Alignment explanation
Indices: 928657--928722 Score: 98
Period size: 22 Copynumber: 3.0 Consensus size: 21
928647 GCTCTCATTT
928657 AAAAA-TTTCTCCACCTTGATA
1 AAAAATTTTCTCC-CCTTGATA
928678 AAAAATTTTCTCCCTCTTGATA
1 AAAAATTTTCTCCC-CTTGATA
928700 AAAAATTTTCTCCCCCTTGATA
1 AAAAATTTTCT-CCCCTTGATA
928722 A
1 A
928723 TTGTTTAAAA
Statistics
Matches: 42, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
21 6 0.14
22 33 0.79
23 3 0.07
ACGTcount: A:0.35, C:0.24, G:0.05, T:0.36
Consensus pattern (21 bp):
AAAAATTTTCTCCCCTTGATA
Found at i:930542 original size:16 final size:18
Alignment explanation
Indices: 930510--930544 Score: 56
Period size: 16 Copynumber: 2.1 Consensus size: 18
930500 AAAGATGTTA
930510 GGGTTTTGAGAGGATTTT
1 GGGTTTTGAGAGGATTTT
930528 GGGTTTTG-G-GGATTTT
1 GGGTTTTGAGAGGATTTT
930544 G
1 G
930545 TATCGATATG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.47
17 1 0.06
18 8 0.47
ACGTcount: A:0.11, C:0.00, G:0.43, T:0.46
Consensus pattern (18 bp):
GGGTTTTGAGAGGATTTT
Found at i:932842 original size:20 final size:21
Alignment explanation
Indices: 932795--932847 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
932785 GCCAATCACT
*
932795 TGTATCGATACATTCTTTGCA
1 TGTATCGATACATTCTGTGCA
*
932816 AGTATCGATACATT-TG-GTCA
1 TGTATCGATACATTCTGTG-CA
932836 TGTATCGATACA
1 TGTATCGATACA
932848 ATGTATCGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 1 0.04
20 14 0.50
21 13 0.46
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (21 bp):
TGTATCGATACATTCTGTGCA
Found at i:938313 original size:20 final size:19
Alignment explanation
Indices: 938267--938323 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 19
938257 ATGTATTGAT
*
938267 ACATTGTATCGATACATAT
1 ACATTGTATCGATACATAG
* *
938286 TCATTGTATCGATACATGG
1 ACATTGTATCGATACATAG
938305 ACAATTGTATCGATACATA
1 AC-ATTGTATCGATACATA
938324 AAACTAGCAG
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
19 17 0.53
20 15 0.47
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (19 bp):
ACATTGTATCGATACATAG
Found at i:946971 original size:13 final size:13
Alignment explanation
Indices: 946953--947011 Score: 69
Period size: 13 Copynumber: 5.1 Consensus size: 13
946943 ACATTATGCT
946953 TTGTATCGATACA
1 TTGTATCGATACA
946966 TTGTATCGATACA
1 TTGTATCGATACA
946979 ---TAT---T-CA
1 TTGTATCGATACA
946985 TTGTATCGATACA
1 TTGTATCGATACA
946998 TTGTATCGATACA
1 TTGTATCGATACA
947011 T
1 T
947012 GGACAATTGT
Statistics
Matches: 39, Mismatches: 0, Indels: 14
0.74 0.00 0.26
Matches are distributed among these distances:
6 2 0.05
7 1 0.03
9 3 0.08
10 3 0.08
12 1 0.03
13 29 0.74
ACGTcount: A:0.31, C:0.15, G:0.14, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:946994 original size:32 final size:32
Alignment explanation
Indices: 946934--947011 Score: 129
Period size: 32 Copynumber: 2.4 Consensus size: 32
946924 CACATCCAGA
*
946934 TGTATCGATACATTATGCTTTGTATCGATACAT
1 TGTATCGATACA-TATGCATTGTATCGATACAT
*
946967 TGTATCGATACATATTCATTGTATCGATACAT
1 TGTATCGATACATATGCATTGTATCGATACAT
946999 TGTATCGATACAT
1 TGTATCGATACAT
947012 GGACAATTGT
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
32 31 0.72
33 12 0.28
ACGTcount: A:0.29, C:0.15, G:0.14, T:0.41
Consensus pattern (32 bp):
TGTATCGATACATATGCATTGTATCGATACAT
Found at i:947100 original size:13 final size:13
Alignment explanation
Indices: 947084--947129 Score: 50
Period size: 13 Copynumber: 4.0 Consensus size: 13
947074 TGGTACACTA
947084 TATCGATACATTG
1 TATCGATACATTG
947097 TATCGATACA-TG
1 TATCGATACATTG
947109 -AT--A-A-ATTG
1 TATCGATACATTG
947117 TATCGATACATTG
1 TATCGATACATTG
947130 CTTGTAACGG
Statistics
Matches: 27, Mismatches: 0, Indels: 12
0.69 0.00 0.31
Matches are distributed among these distances:
7 1 0.04
8 3 0.11
9 3 0.11
11 3 0.11
12 3 0.11
13 14 0.52
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.37
Consensus pattern (13 bp):
TATCGATACATTG
Found at i:947103 original size:33 final size:33
Alignment explanation
Indices: 947061--947129 Score: 102
Period size: 33 Copynumber: 2.1 Consensus size: 33
947051 CTACTGCTGT
* *
947061 TTGTATCGATACATGGTACACTATATCGATACA
1 TTGTATCGATACATGATAAACTATATCGATACA
* *
947094 TTGTATCGATACATGATAAATTGTATCGATACA
1 TTGTATCGATACATGATAAACTATATCGATACA
947127 TTG
1 TTG
947130 CTTGTAACGG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.36
Consensus pattern (33 bp):
TTGTATCGATACATGATAAACTATATCGATACA
Found at i:947111 original size:20 final size:20
Alignment explanation
Indices: 947088--947127 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
947078 ACACTATATC
*
947088 GATACATTGTATCGATACAT
1 GATAAATTGTATCGATACAT
947108 GATAAATTGTATCGATACAT
1 GATAAATTGTATCGATACAT
947128 TGCTTGTAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (20 bp):
GATAAATTGTATCGATACAT
Found at i:947933 original size:19 final size:19
Alignment explanation
Indices: 947909--947963 Score: 110
Period size: 19 Copynumber: 2.9 Consensus size: 19
947899 CTGTTAGTTT
947909 CATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
947928 CATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
947947 CATGTATCGATACAATG
1 CATGTATCGATACAATG
947964 TATCGATACA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 36 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.27
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:947966 original size:13 final size:13
Alignment explanation
Indices: 947948--947974 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
947938 TACAATGAAC
947948 ATGTATCGATACA
1 ATGTATCGATACA
947961 ATGTATCGATACA
1 ATGTATCGATACA
947974 A
1 A
947975 AGCATAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:950307 original size:51 final size:51
Alignment explanation
Indices: 950214--950333 Score: 125
Period size: 51 Copynumber: 2.4 Consensus size: 51
950204 TTATTTCCGA
* * * * * * *
950214 GGGGATACTCAAACCCTGGTTTTATTTTCAAAGCACCGATTTT-TCACAATC
1 GGGGATACTCCAACCCCGATTTCATTTCCAAAACACCAATTTTCT-ACAATC
* *
950265 GGGGATACTCCAACCCCGATTTCATTTCCAAAACATCAATTTTCTATAATC
1 GGGGATACTCCAACCCCGATTTCATTTCCAAAACACCAATTTTCTACAATC
* *
950316 GAGGATGCTCCAACCCCG
1 GGGGATACTCCAACCCCG
950334 TTATTTTCAA
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
51 56 0.98
52 1 0.02
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.29
Consensus pattern (51 bp):
GGGGATACTCCAACCCCGATTTCATTTCCAAAACACCAATTTTCTACAATC
Found at i:950355 original size:79 final size:79
Alignment explanation
Indices: 950266--950498 Score: 326
Period size: 79 Copynumber: 2.9 Consensus size: 79
950256 TTCACAATCG
* * * *
950266 GGGATACTCCAACCCCGATTTCATTTCCAAAACATCAATTTTCTATAATCGAGGATGCTCCAACC
1 GGGATACTCCAACCCCGATTTTATTTCCAAAACATCAATTTTCTACAATCGGGGATACTCCAACC
950331 CCGTTATTTTCAAA
66 CCGTTATTTTCAAA
* *
950345 GGGATACTCCAACCCCGATTTTATTTCCAAAACATCGATTTT-TCACAATCGGGGATACTCCAAT
1 GGGATACTCCAACCCCGATTTTATTTCCAAAACATCAATTTTCT-ACAATCGGGGATACTCCAAC
* *
950409 CTCGTTATTTTTCAAG
65 CCCGTTA-TTTTCAAA
* * *
950425 GGGATACTCCAACCCCGGTTTTATTTCCAAAACATCAAATTTTC-ACCATTGGGGATACTCCAAC
1 GGGATACTCCAACCCCGATTTTATTTCCAAAACATC-AATTTTCTACAATCGGGGATACTCCAAC
950489 CCCGTTATTT
65 CCCGTTATTT
950499 CTGTGGGGGT
Statistics
Matches: 136, Mismatches: 14, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
78 1 0.01
79 65 0.48
80 65 0.48
81 5 0.04
ACGTcount: A:0.28, C:0.27, G:0.13, T:0.32
Consensus pattern (79 bp):
GGGATACTCCAACCCCGATTTTATTTCCAAAACATCAATTTTCTACAATCGGGGATACTCCAACC
CCGTTATTTTCAAA
Found at i:950441 original size:80 final size:79
Alignment explanation
Indices: 950265--950498 Score: 335
Period size: 80 Copynumber: 2.9 Consensus size: 79
950255 TTTCACAATC
* * * *
950265 GGGGATACTCCAACCCCGATTTCATTTCCAAAACATCAATTTTCTATAATCGAGGATGCTCCAAC
1 GGGGATACTCCAACCCCGATTTTATTTCCAAAACATCAATTTTC-ACAATCGGGGATACTCCAAC
950330 CCCGTTA-TTTTCAA
65 CCCGTTATTTTTCAA
* * *
950344 AGGGATACTCCAACCCCGATTTTATTTCCAAAACATCGATTTTTCACAATCGGGGATACTCCAAT
1 GGGGATACTCCAACCCCGATTTTATTTCCAAAACATC-AATTTTCACAATCGGGGATACTCCAAC
*
950409 CTCGTTATTTTTCAA
65 CCCGTTATTTTTCAA
* * *
950424 GGGGATACTCCAACCCCGGTTTTATTTCCAAAACATCAAATTTTCACCATTGGGGATACTCCAAC
1 GGGGATACTCCAACCCCGATTTTATTTCCAAAACATC-AATTTTCACAATCGGGGATACTCCAAC
950489 CCCGTTATTT
65 CCCGTTATTT
950499 CTGTGGGGGT
Statistics
Matches: 137, Mismatches: 16, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
79 57 0.42
80 80 0.58
ACGTcount: A:0.28, C:0.27, G:0.13, T:0.32
Consensus pattern (79 bp):
GGGGATACTCCAACCCCGATTTTATTTCCAAAACATCAATTTTCACAATCGGGGATACTCCAACC
CCGTTATTTTTCAA
Found at i:950548 original size:80 final size:81
Alignment explanation
Indices: 950265--950549 Score: 303
Period size: 79 Copynumber: 3.6 Consensus size: 81
950255 TTTCACAATC
* * * * * *
950265 GGGGATACTCCAACCCCGATTTCATTTCCAAAACATC-AA-TTTTCTATAATCGAGGATGCTCCA
1 GGGGATACTCCAACCCCGGTTTTATCTCCAAAACATCAAATTTTTC-ACAATCGGGGATACTCCA
950328 ACCCCGTTATTT-TCAA
65 ACCCCGTTATTTCTCAA
* * * *
950344 AGGGATACTCCAACCCCGATTTTATTTCCAAAACATC-GATTTTTCACAATCGGGGATACTCCAA
1 GGGGATACTCCAACCCCGGTTTTATCTCCAAAACATCAAATTTTTCACAATCGGGGATACTCCAA
* * *
950408 TCTCGTTATTTTTCAA
66 CCCCGTTATTTCTCAA
* * *
950424 GGGGATACTCCAACCCCGGTTTTATTTCCAAAACATCAAA-TTTTCACCATTGGGGATACTCCAA
1 GGGGATACTCCAACCCCGGTTTTATCTCCAAAACATCAAATTTTTCACAATCGGGGATACTCCAA
**
950488 CCCCGTTATTTCT-GT
66 CCCCGTTATTTCTCAA
* * * * * *
950503 GGGGGTACTCCGATCCCGTTTTTATCTCCAAAATATTAAATTTTTCA
1 GGGGATACTCCAACCCCGGTTTTATCTCCAAAACATCAAATTTTTCA
950550 TGGGGCGATG
Statistics
Matches: 177, Mismatches: 25, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
79 94 0.53
80 82 0.46
81 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.33
Consensus pattern (81 bp):
GGGGATACTCCAACCCCGGTTTTATCTCCAAAACATCAAATTTTTCACAATCGGGGATACTCCAA
CCCCGTTATTTCTCAA
Found at i:952528 original size:19 final size:19
Alignment explanation
Indices: 952504--952557 Score: 63
Period size: 20 Copynumber: 2.8 Consensus size: 19
952494 ACATTATGCT
* *
952504 TTGTATCGATACATGTTTA
1 TTGTATCGATACATGCTAA
* *
952523 TTGTATCGATAAACTCCTAA
1 TTGTATCGATACA-TGCTAA
952543 TTGTATCGATACATG
1 TTGTATCGATACATG
952558 AAACTGGCAG
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
19 13 0.46
20 15 0.54
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (19 bp):
TTGTATCGATACATGCTAA
Found at i:955503 original size:477 final size:477
Alignment explanation
Indices: 953370--956181 Score: 3428
Period size: 477 Copynumber: 5.9 Consensus size: 477
953360 AGAACTTACA
* * * *
953370 GTATGAACTTTGGTTTAAAGGAAATTATGGTAAAGAAAACATTTCCATACAAAAGAAAAATCATT
1 GTATGAACTTTGATTTAAAGGAAAATAGGGTAAAGAAAACATTTCCATGCAAAAG-AAAATCATT
* * * * **
953435 AACATCAA-TTATCGTAATGAGGAGAATGTGTTTATTGCGCCTAATCACAAAATTAATAAAGATC
65 AACAT-AATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAACGAAGATC
* * * * *
953499 ATTA-TAAGAATCCATGGTTGTCTCATTTGAGGTACGAACTTAGACTTTACGAAAATTGGTAGGG
129 ATTACT-AGAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTATGAAAATTGGT-GGG
* * * *
953563 -AAAATACCTTTCTTGCAAAACGAAAGCATCAATATCG-TGTATCCTAATGAGAAGACTATATTT
192 AAAAATGCCTTTCTTGCGAAACCAAAGCATCAATAT-GATGTATCCTAATGAGAAGACTATGTTT
* * * *
953626 ATGGTGCCTAATCTTGAAAAGAA-CAGGGATTAGTACGAGTATTCATGTTTGTTGTATTTAAGAG
256 ATGGTGCCTAATCCTGAAAAGAATGA-GGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAG
* *
953690 ACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATAAAT
320 ACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAACATCAAT
* * * * ** *
953755 GTCATGTAACCTAATG-AGGGAAATGTGGTTTTGGCTTCCGAGACTTGAAAAGAATAAAGACTGT
385 GTCATGTATCCTAATGAAAGG-AATGTGTTTTTGGCTTCCTAGACTTGAAAAGAATGGAGACTAT
*
953819 TACGGGAATTGATGCTCGTCTTATTTAAG
449 TACGAGAATTGATGCTCGTCTTATTTAAG
*
953848 GTATGAACTTTGATTTAAAAGAAAATAGGGTAAAGAAAACATTTCCATGCAAAAGAAAATCATTA
1 GTATGAACTTTGATTTAAAGGAAAATAGGGTAAAGAAAACATTTCCATGCAAAAGAAAATCATTA
* *
953913 ACATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCGTAATCACAAAATGAACGAAGATCAT
66 ACATAATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAACGAAGATCAT
* *
953978 TACTAGAATCCATGTTTGTCTCATTTGAGGCATGAGCTTAGACTTTATGAAAATTGGTGGGAAAA
131 TACTAGAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTATGAAAATTGGTGGGAAAA
** * * ** *
954043 ATGCCTTTCCCGCAAAACCAAAGCATCAATATCACATATCATAATGAGAAGACTATGTTTATGGT
196 ATGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGT
* * * * *
954108 GCTTAATCTTGAAAATAATGGGGATTAGTGTGAGTATTCATGTTTGTCGTATTTAAGAGACAAAC
261 GCCTAATCCTGAAAAGAATGAGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAAC
* ** *
954173 TTTGATTCTATCAAAAACGGTGGAAAAAAAAAAAGCTTTTCTTGCAACACCAAAACATCAACGTC
326 TTTGATTCTATCAAAAACGGTGG---AAAGAAAAGCTTTTCTTGTGACACCAAAACATCAATGTC
* * *
954238 ATGTATCCTAGTGAAAGGAATGTGGTTTTGGCTTCCTAGGCTTGAAAAGAATGGAGACTATTACG
388 ATGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCTAGACTTGAAAAGAATGGAGACTATTACG
* *
954303 AGAATCGATGCTTGTCTTATTTAAG
453 AGAATTGATGCTCGTCTTATTTAAG
*
954328 GAATGAACTTTGATTTAAAGGAAAATAGGGTAAAGAAAACA-TTCCATGCAAAAGAAAATCATTA
1 GTATGAACTTTGATTTAAAGGAAAATAGGGTAAAGAAAACATTTCCATGCAAAAGAAAATCATTA
*
954392 ACATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAACGAAGATCAT
66 ACATAATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAACGAAGATCAT
* * *
954457 TGCTAGAATCCGTGCTTTGTCTCATTTAAGGCATTAACTTAGACTTTATGAAAATTGGTGGGAAA
131 TACTAGAATCCATG-TTTGTCTCATTTAAGGCATGAACTTAGACTTTATGAAAATTGGTGGGAAA
* * * * * *
954522 AATGCCTTTCTTGTGAAACTAAAGAATCAGTATGTTGTATTCTAATGAGAAGACTATGTTTATGG
195 AATGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGG
* * * * *
954587 TGCCTAATCCTGAAAAGAATG-GGAATTAGTATGAGTATTCATATTTCTCATATTTAACAAACAA
260 TGCCTAATCCTGAAAAGAATGAGG-ATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAA
* * **** * *
954651 ACTTTGATTCTATTAAAAATGACAAAAAGAAAAGCTTTTCTTGTGATACTAAAACATCAATGTCA
324 ACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAACATCAATGTCA
* * * * * *
954716 TGTATCCTAATGAAGGGAATGTGTTTTTTAGCTTCCCAGTCATT-TAAAGAATAGAGACTATTAC
389 TGTATCCTAATGAAAGGAATGTG-TTTTTGGCTTCCTAGAC-TTGAAAAGAATGGAGACTATTAC
* ** *
954780 AAGAATTGATGCTTATCTTATTTAAA
452 GAGAATTGATGCTCGTCTTATTTAAG
* * * * * * * *
954806 TTATGAACTTTGATTTTAAGGAAAACAAGGTAAAGAAGAGAATTCCATGAAAAAGTAAAA-CATT
1 GTATGAACTTTGATTTAAAGGAAAATAGGGTAAAGAAAACATTTCCATGCAAAAG-AAAATCATT
* * * * *
954870 AATATAATTTATCATAACGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGATGATCA
65 AACATAATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAACGAAGATCA
* * * ** * ***
954935 TTACTGGAATCCATGTTTGTCTTATTTGAGGCACAAACTTAGAGTTTCCAAAAATTGGTGGGAAA
130 TTACTAGAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTATGAAAATTGGTGGGAAA
* * * * *
955000 AAAGCCTTTCTTGTGAAACTAAAGCATCGATATGATGTATCCTAATGAGAAGACTATCTTTATGG
195 AATGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGG
* * *
955065 TGCCTAATCCTAAAAAGAATGAGGATTAGTACGAGTATTCATGTTCGTCGTATTTAAGAGACAAA
260 TGCCTAATCCTGAAAAGAATGAGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAA
* * ** *
955130 CTTTGATTCTATCAAAATCGGTGGAAAGAAAAGCTTTTCTCGCAACACCAAAACATCAACGTCAT
325 CTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAACATCAATGTCAT
* ** * * *
955195 GTATCCTAATGAAAAGAATGCATTTTTGGCTTCCTACACTTGAAAAGAGTGGAGACTGTTACGAG
390 GTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCTAGACTTGAAAAGAATGGAGACTATTACGAG
* *
955260 AATCGATGCTCGACTTATTTAAG
455 AATTGATGCTCGTCTTATTTAAG
*
955283 GTATGAACTTTGATTTAAAGGAAAATAGGGTAAAGAAAACATTTCCATGCAAAAGAAAATCATCA
1 GTATGAACTTTGATTTAAAGGAAAATAGGGTAAAGAAAACATTTCCATGCAAAAGAAAATCATTA
* *
955348 ATATAATTTATCCTAATGAGGAGAATGTGTTTATAGTGCATAATCACAAAATGAACGAAGATCAT
66 ACATAATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAACGAAGATCAT
* * *
955413 TACTAGAATCCATGTTTGTCTCATTTAAGGCATGAACTTGGACTTTATGAAAATTAGCGGGAAAA
131 TACTAGAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTATGAAAATTGGTGGGAAAA
* * *
955478 ATGCCTTTCTTGTGAAACCAAAGCATCAATATGTTGTATCTTAATGAGAAGACTATGTTTATGGT
196 ATGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGT
* * *
955543 GCCTAATCCTTTAAAA-AAT-AGGGATTAGTATGAGTATTCATGTTTTTAGTATTTAAGAGACAA
261 GCCTAATCC-TGAAAAGAATGA-GGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAA
* * * * * **
955606 ACTTTGATTCTATCAAAAACGATGAAAATAAAAGTTTTTCTTGTGACACTAAAACATCAATGTTT
324 ACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAACATCAATGTCA
* * * * *
955671 TGAATCGTAATGAAAGGAATGTGTTTTTGGCTTCCTAGTCTTGAAAATAATGGAGACTATTACCA
389 TGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCTAGACTTGAAAAGAATGGAGACTATTACGA
* * *
955736 AAATTGTTGCTTGTCTTATTT-AG
454 GAATTGATGCTCGTCTTATTTAAG
* * * * * *
955759 ATTATGAACTTTGATTTTAAGGAAAATAGGGTAATGAAAAGATTTTCATGTAAAA-AAAATCATT
1 -GTATGAACTTTGATTTAAAGGAAAATAGGGTAAAGAAAACATTTCCATGCAAAAGAAAATCATT
* * ** * ** * * *
955823 AATATCATTTATTATAACGAGGAGAATGCATCTATAGCGCCTAATCGA-AAAATGAATGAAGATC
65 AACATAATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC-ACAAAATGAACGAAGATC
** * * * * * *
955887 ATTGGTAGAATCCATGCTTGCCTCATTTGAA-GCGTTAACTTTGACTTT-TAAAAAATTGGTGGG
129 ATTACTAGAATCCATGTTTGTCTCATTT-AAGGCATGAACTTAGACTTTAT-GAAAATTGGTGGG
* * * *
955950 AAAAAAGCCTTTCTTGCGAAACCAAAGCATCAGTATGATGTATCGTAACGAGAAGACTATGTTTA
192 AAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTA
** * * * *
956015 TCCTGCCTAATCCTGAAAAGAACGAGGATTATTATGAGTATTCATGTTTGTCTTATCTAAGAGAC
257 TGGTGCCTAATCCTGAAAAGAATGAGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGAC
* * * * ****
956080 AAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTTTTGCGACAGCAATGTTTCAATGT
322 AAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAACATCAATGT
* * *
956145 CTTGCATCCCAATGAACA-GAATGTGTTTTTGGCTTCC
387 CATGTATCCTAATGAA-AGGAATGTGTTTTTGGCTTCC
956182 CAGTCTTTAA
Statistics
Matches: 2007, Mismatches: 300, Indels: 56
0.85 0.13 0.02
Matches are distributed among these distances:
475 6 0.00
476 311 0.15
477 807 0.40
478 367 0.18
479 192 0.10
480 321 0.16
481 3 0.00
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (477 bp):
GTATGAACTTTGATTTAAAGGAAAATAGGGTAAAGAAAACATTTCCATGCAAAAGAAAATCATTA
ACATAATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAACGAAGATCAT
TACTAGAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTATGAAAATTGGTGGGAAAA
ATGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGT
GCCTAATCCTGAAAAGAATGAGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAAC
TTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAACATCAATGTCATG
TATCCTAATGAAAGGAATGTGTTTTTGGCTTCCTAGACTTGAAAAGAATGGAGACTATTACGAGA
ATTGATGCTCGTCTTATTTAAG
Found at i:956794 original size:20 final size:20
Alignment explanation
Indices: 956769--956843 Score: 87
Period size: 20 Copynumber: 3.8 Consensus size: 20
956759 TTTTACCTAG
956769 ATGTATCGATACATTTTTAA
1 ATGTATCGATACATTTTTAA
* * *
956789 ATGTATCGATACATGTATGA
1 ATGTATCGATACATTTTTAA
* * * *
956809 ATGCATCGATTCATTCTTCA
1 ATGTATCGATACATTTTTAA
956829 ATGTATCGATACATT
1 ATGTATCGATACATT
956844 CTATCTTTTT
Statistics
Matches: 44, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.32, C:0.15, G:0.13, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATTTTTAA
Found at i:964646 original size:33 final size:32
Alignment explanation
Indices: 964583--964650 Score: 93
Period size: 33 Copynumber: 2.1 Consensus size: 32
964573 CCTTAACTGT
* *
964583 TTGTATCGATACATACAAGATGTATTGATACA
1 TTGTATCAATACATACAAGATGTATCGATACA
964615 TTGTATCAATACATGACCAA-ATGTATCGATACA
1 TTGTATCAATACAT-A-CAAGATGTATCGATACA
964648 TTG
1 TTG
964651 GCTTGTAACG
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
32 13 0.41
33 16 0.50
34 3 0.09
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.34
Consensus pattern (32 bp):
TTGTATCAATACATACAAGATGTATCGATACA
Found at i:970984 original size:22 final size:21
Alignment explanation
Indices: 970942--970985 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
970932 AAATTTCTTG
970942 TTTTTCACTTCAAAACACATCA
1 TTTTTCAC-TCAAAACACATCA
970964 TTTTTCA-TCAAAATCATCATCA
1 TTTTTCACTCAAAA-CA-CATCA
970986 AAAACAGTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
20 6 0.30
21 2 0.10
22 12 0.60
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (21 bp):
TTTTTCACTCAAAACACATCA
Found at i:973347 original size:13 final size:13
Alignment explanation
Indices: 973329--973353 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
973319 ATAATGCACA
973329 GTATCGATACATT
1 GTATCGATACATT
973342 GTATCGATACAT
1 GTATCGATACAT
973354 GACCACTGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:973350 original size:33 final size:32
Alignment explanation
Indices: 973308--973370 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 32
973298 CACCTTCAGA
*
973308 TGTATCGATACATAATGCACAGTATCGATACAT
1 TGTATCGATACATAA-CCACAGTATCGATACAT
* *
973341 TGTATCGATACATGACCACTGTATCGATAC
1 TGTATCGATACATAACCACAGTATCGATAC
973371 TTGCAAAGAT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 13 0.48
33 14 0.52
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (32 bp):
TGTATCGATACATAACCACAGTATCGATACAT
Found at i:973460 original size:13 final size:13
Alignment explanation
Indices: 973442--973467 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
973432 ACATACAAGA
973442 TGTATCGATACAT
1 TGTATCGATACAT
973455 TGTATCGATACAT
1 TGTATCGATACAT
973468 GACCAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:973483 original size:33 final size:32
Alignment explanation
Indices: 973422--973489 Score: 111
Period size: 33 Copynumber: 2.1 Consensus size: 32
973412 CCTTAACTAT
973422 TTGTATCGATACATACAAGATGTATCGATACA
1 TTGTATCGATACATACAAGATGTATCGATACA
973454 TTGTATCGATACATGACCAA-ATGTATCGATACA
1 TTGTATCGATACAT-A-CAAGATGTATCGATACA
973487 TTG
1 TTG
973490 GCTTGTAATG
Statistics
Matches: 34, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
32 14 0.41
33 17 0.50
34 3 0.09
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.32
Consensus pattern (32 bp):
TTGTATCGATACATACAAGATGTATCGATACA
Found at i:980832 original size:9 final size:9
Alignment explanation
Indices: 980818--980902 Score: 82
Period size: 9 Copynumber: 9.1 Consensus size: 9
980808 CATCCATCGT
980818 ACAAAAAAA
1 ACAAAAAAA
980827 ACAAAAAAA
1 ACAAAAAAA
980836 A-ATAAAAAA
1 ACA-AAAAAA
*
980845 ATAAAAAAA
1 ACAAAAAAA
*
980854 CCAAGAAAAA
1 ACAA-AAAAA
**
980864 ATTAAAAAA
1 ACAAAAAAA
980873 ACAAAAAAA
1 ACAAAAAAA
*
980882 CCAAAAACAA
1 ACAAAAA-AA
980892 ACAAACAAAA
1 ACAAA-AAAA
980902 A
1 A
980903 AGGGGTCCAG
Statistics
Matches: 62, Mismatches: 9, Indels: 9
0.77 0.11 0.11
Matches are distributed among these distances:
8 1 0.02
9 43 0.69
10 16 0.26
11 2 0.03
ACGTcount: A:0.82, C:0.12, G:0.01, T:0.05
Consensus pattern (9 bp):
ACAAAAAAA
Found at i:980834 original size:8 final size:8
Alignment explanation
Indices: 980821--980903 Score: 60
Period size: 8 Copynumber: 9.8 Consensus size: 8
980811 CCATCGTACA
980821 AAAAAAAC
1 AAAAAAAC
*
980829 AAAAAAAAAT
1 --AAAAAAAC
*
980839 AAAAAAAT
1 AAAAAAAC
980847 AAAAAAACC
1 AAAAAAA-C
*
980856 AAGAAAAAATT
1 -A-AAAAAA-C
980867 AAAAAAAC
1 AAAAAAAC
980875 AAAAAAAC
1 AAAAAAAC
*
980883 -CAAAAAC
1 AAAAAAAC
*
980890 AAACAAAC
1 AAAAAAAC
980898 AAAAAA
1 AAAAAA
980904 GGGGTCCAGA
Statistics
Matches: 60, Mismatches: 9, Indels: 10
0.76 0.11 0.13
Matches are distributed among these distances:
7 6 0.10
8 33 0.55
9 6 0.10
10 9 0.15
11 6 0.10
ACGTcount: A:0.83, C:0.11, G:0.01, T:0.05
Consensus pattern (8 bp):
AAAAAAAC
Found at i:980882 original size:28 final size:27
Alignment explanation
Indices: 980818--980888 Score: 106
Period size: 28 Copynumber: 2.6 Consensus size: 27
980808 CATCCATCGT
*
980818 ACAAAAAAAACAAAAAAAAATAAAAAA
1 ACAAAAAAACCAAAAAAAAATAAAAAA
* *
980845 ATAAAAAAACCAAGAAAAAATTAAAAAA
1 ACAAAAAAACCAA-AAAAAAATAAAAAA
980873 ACAAAAAAACCAAAAA
1 ACAAAAAAACCAAAAA
980889 CAAACAAACA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
27 14 0.36
28 25 0.64
ACGTcount: A:0.83, C:0.10, G:0.01, T:0.06
Consensus pattern (27 bp):
ACAAAAAAACCAAAAAAAAATAAAAAA
Found at i:980903 original size:15 final size:15
Alignment explanation
Indices: 980818--980903 Score: 56
Period size: 15 Copynumber: 6.1 Consensus size: 15
980808 CATCCATCGT
*
980818 ACAAAAAAA-ACAAA
1 ACAAAAAAACAAAAA
*
980832 A-AAAAATA-AAAAA
1 ACAAAAAAACAAAAA
* * *
980845 ATAAAAAAACCAAGA
1 ACAAAAAAACAAAAA
**
980860 A-AAAATTA-AAAAA
1 ACAAAAAAACAAAAA
*
980873 ACAAAAAAACCAAAA
1 ACAAAAAAACAAAAA
*
980888 ACAAACAAACAAAAA
1 ACAAAAAAACAAAAA
980903 A
1 A
980904 GGGGTCCAGA
Statistics
Matches: 54, Mismatches: 14, Indels: 7
0.72 0.19 0.09
Matches are distributed among these distances:
13 15 0.28
14 17 0.31
15 22 0.41
ACGTcount: A:0.83, C:0.12, G:0.01, T:0.05
Consensus pattern (15 bp):
ACAAAAAAACAAAAA
Found at i:982182 original size:28 final size:28
Alignment explanation
Indices: 982149--982517 Score: 389
Period size: 28 Copynumber: 12.8 Consensus size: 28
982139 CTCTTCAACA
* **
982149 CCCACAGGTCAGTGGCATTTTTTCAAAG
1 CCCACAAGTCAGTGGCATCCTTTCAAAG
*
982177 CCCACAAGTCAGTGGCTTCCTTTCAAAG
1 CCCACAAGTCAGTGGCATCCTTTCAAAG
* * *
982205 CCCATAAGTTAGTGGCATCTTTTCAAAG
1 CCCACAAGTCAGTGGCATCCTTTCAAAG
*
982233 CCCACAAGTCAGTGGCATCCTTTTAAAG
1 CCCACAAGTCAGTGGCATCCTTTCAAAG
* *
982261 CCCACAAGTTAATGGCATCCTTTCAAAG
1 CCCACAAGTCAGTGGCATCCTTTCAAAG
* *
982289 CCCACAAGTTAGTGGCATCTTTTCAAAAG
1 CCCACAAGTCAGTGGCATCCTTTC-AAAG
** * *
982318 AACAAAAGTCAGTGGCACCCTTTCAAAG
1 CCCACAAGTCAGTGGCATCCTTTCAAAG
* * *
982346 CCCATATAAATCAGTGGCACCCTTTCAAAG
1 CCC--ACAAGTCAGTGGCATCCTTTCAAAG
* *
982376 CCTACAAGTCAGTGGCACCCTTTCAAAG
1 CCCACAAGTCAGTGGCATCCTTTCAAAG
* *
982404 CCCATAAGTCAATGGCATACCCTTTCAAAG
1 CCCACAAGTCAGTGGCAT--CCTTTCAAAG
*
982434 CCCACAAGTCAGTGGCACCCTTTCAAAG
1 CCCACAAGTCAGTGGCATCCTTTCAAAG
* *
982462 CCCACATAAGTCGGTGGCAACTCTTTTCAAAG
1 CCCAC--AAGTCAGTGGC-A-TCCTTTCAAAG
*
982494 CCCACATAAGTTAGTGGCA-CCTTT
1 CCCAC--AAGTCAGTGGCATCCTTT
982518 TTCTTTGAAA
Statistics
Matches: 289, Mismatches: 43, Indels: 17
0.83 0.12 0.05
Matches are distributed among these distances:
28 176 0.61
29 26 0.09
30 60 0.21
31 2 0.01
32 25 0.09
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (28 bp):
CCCACAAGTCAGTGGCATCCTTTCAAAG
Found at i:982653 original size:45 final size:47
Alignment explanation
Indices: 982598--982715 Score: 125
Period size: 49 Copynumber: 2.5 Consensus size: 47
982588 TCTGATATCA
* *
982598 CTGGCATTGAATCAGCATATTGG-CACCTTT-ATTAACCCAATGTCG
1 CTGGCCTTGAATCAGCACATTGGCCACCTTTCATTAACCCAATGTCG
* * * *
982643 CTGGCCTTGAATCAGCACATTGGTCCACTTTTCCCTTAGCCCAATGTTG
1 CTGGCCTTGAATCAGCACATTGG-CCACCTTT-CATTAACCCAATGTCG
*
982692 CTGGCCTTGAAAT-GGCACATTGGC
1 CTGGCCTTG-AATCAGCACATTGGC
982716 ACTCCTCTCA
Statistics
Matches: 61, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
45 21 0.34
47 6 0.10
48 1 0.02
49 30 0.49
50 3 0.05
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (47 bp):
CTGGCCTTGAATCAGCACATTGGCCACCTTTCATTAACCCAATGTCG
Found at i:983455 original size:20 final size:20
Alignment explanation
Indices: 983430--983486 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 20
983420 TTTTACCTAG
*
983430 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTACA
* * *
983450 ATGTATCGATACATGTAAGA
1 ATGTATCGATACATTTTACA
*
983470 ATGTATCGATGCATTTT
1 ATGTATCGATACATTTT
983487 GTCTTTTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.32, C:0.12, G:0.16, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATTTTACA
Found at i:987602 original size:474 final size:475
Alignment explanation
Indices: 986704--1000720 Score: 14185
Period size: 474 Copynumber: 29.8 Consensus size: 475
986694 CATTGCGATA
* * * * *
986704 GTCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGTAAATAAAAGATTTCCATGCAGA
1 GTCTTATTTAAAGTATAAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATGCAAA
* *** * * * * *
986769 AGGAAATCATTAATATCATTTATCCTAAACTGGAGAATATGTATATTGTCCCTAATCAAAAAAAT
66 AGAAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC-ACAAAAT
* * * * *
986834 AAATGAAGATCATTACTATAATCCATGTTTGTCTCAATTGAGGCATGGACTTAGACTTTACCAAA
130 GAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAA
* * * *
986899 ATTGGTGGGAAAAAGGCCTTTATTGTGAAACCAAAGCATCAACATCG-TGTATCCTAATGAGAAG
195 ATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATAT-GATGTATCCTAATGAGAAG
* * * * *
986963 GC--CGCTTATGGTGCCAAATCCTGAAAAGAATAGGGATT-GTTATGAGTATTCATGTTTGTCTT
259 ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAG-TATGAGTATTCATGTTTGTCTT
** * * * * * * *
987025 AACTAGGCGACAAACTTTAATTCTATCAAAAACGGTGGAAAAAAAAGCTTTTCATGCGACAACAA
323 ATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAA
* * * * * * *
987090 AGCTTTAATGTCTTGCATCCCAAAGAATGGACTGTGTTTTGGCTT-CCAATCTTGAAAAGAATGG
388 AGCTTCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGG
*
987154 AGATTGTTATGAGAATCGATGTT
453 AGACTGTTATGAGAATCGATGTT
* * * **
987177 GGTCTTATTTAAAGAATAAAGTTTGATTTTAAGGAAAAAAGGGTAAAGAAAAGATTTTTATGCAA
1 -GTCTTATTTAAAGTATAAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATGCAA
*
987242 ATA-AAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGATTATAGTGCCTAATCACAAAA
65 A-AGAAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAA
* * * * ** **
987306 TGAATGAAGATCAATAATAGAATCAATGTTTGTCTCACTTGAGGCACCAACTTAGACTTCGCAAA
129 TGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAA
** * * * * * * * * * *
987371 AAAAGGTGGGAAAAAAGCTTTTCTTGCAAAATCGAAGCATCAATATGCTTTATCTTAAGGACAAA
194 AATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAG
* ** * *
987436 AATATGTTTGCGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCGTA
259 ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTA
** *** *
987501 TTTAAGAGACAAACTTCAATTCTATCAAAAACAATGGAAA-AAAATCTTTTCTTGCGACACCAAA
324 TTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAA
* ** * * *
987565 CCTTCAATGTCATGTATCCTAATGAAGGGCTTGTGTTTTTAGCTTCCTAGT-TT----AGAA---
389 GCTTCAATGTCATGTATCCTAATGAAGGGAATGTG-TTTTGGCTTCCCAATCTTGAAAAGAATGG
* **
987622 A-A---TAATG-GAATCGGGGCTT
453 AGACTGTTATGAGAATCGATG-TT
* * ** * * * * * * *
987641 GTCTTATTTAAGGTATGAACTTTGATTCAAAAGAAAATAAGATAAAGAAAACATTTTCGTGTAAA
1 GTCTTATTTAAAGTATAAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATGCAAA
* * * * ** *
987706 AGAAAATCATTAACATCTTTTATCTTAAAGAGGAGAAAATGTTTATAGCGCCTAATCACAAAAT-
66 AGAAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG
* * * * * **
987770 AACGAAGATCATTACTAAAATCCATGTTTGTTTCATTTAAGGCATTAACTTAGACTTTATGAAAA
131 AATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAA
* * * *
987835 TTGGTGGGAAAAATGCCTTTCTTACGAAACCAAAGCATCGATATGTTGTATCCTAATGAGAAGAC
196 TTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGAC
* * * ** * *
987900 TATGCTTCTGGTGCCTAATCTTGAAAAGAACAGGGATTAGTATGAGTATTCATGTTTCTCGTATT
261 TATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATT
* * * * *
987965 TAAGAGACAAACTTTGATTCTATAAAAAACGGTGAAAATAAAAGCTTTTCTTGCGACAGCAAAGC
326 TAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC
* * * *
988030 ATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTTCCCAGTCTTGAAAAGAATGGTG
391 TTCAATGTCATGTATCCTAATGAAGGGAATGTG-TTTTGGCTTCCCAATCTTGAAAAGAATGGAG
* *
988095 ACTATTACT-AGAATCGGTGCTT
455 ACTGTTA-TGAGAATCGATG-TT
* * * * * * * *
988117 GTCTT-TTTTAAGATATGAACTTTGATTTAAAGGAAAATAGGGTAAATAAAAGATTTTCACGTAG
1 GTCTTATTTAAAG-TATAAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATGCAA
* * * * ** * *
988181 AAGGAAATCATTAATATCTTTTATCCTAATCAGGAGAATGTGTATATTTTCCCTAAT-AAACAAA
65 AAGAAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACA-AAA
* * *
988245 TGAATGAAGTTCATTACTAGAATCCATGTTTGTCTTATTTGAGGCATGAACTTAGACTTTACCAA
129 TGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAA
* * * *
988310 AACTGGTGGGAAAAATGCCTTTCTTTCGAAACCAAAGCATCAATATCG-TGTATCTTAATGAGAA
194 AATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATAT-GATGTATCCTAATGAGAA
* * * *
988374 GAC--CGTTTATGGTGCCAAATCCTGAAAAGAATGGGGATTATTATAAGTATTCATGTTTGTCTT
258 GACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTT
* ** * * **
988437 ATCTAAGAGACAAAGATTGATTCTATCAAAAATGGTGAAAAGAAAAGCTTTTCTTGCAACAGGAA
323 ATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAA
* * * * * * * * *
988502 AGCTTTAATGTCTTGCATCCCAAAGAACGGACTGTGTTTTGGCATCCCAATCTTGAAAAGAATAG
388 AGCTTCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGG
*
988567 AGACTGTTATGATAATCGATGCTT
453 AGACTGTTATGAGAATCGATG-TT
* * * * **
988591 GTCTTATTTAAAGGATAAACTTTGATTTTAAGGAAAATTGGGTAAGGAAAATATTTTTATGCAAA
1 GTCTTATTTAAAGTATAAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATGCAAA
* * *
988656 TGAAAATCATTAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTTATCACAAAATG
66 AGAAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG
* * * * ** *
988721 AATGAAGATCAATACTAGAATCAATATTTGTCTCACTTGAGGCACCAACTTAGACTTTGCAAAAA
131 AATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAA
* * * * * * * *
988786 ATGGTGGGAAAAAAGCTTTTCTTGCGAAACCAAAGCAT-AATATGCTTTATCTTAAGGAGAAAAA
196 TTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGAC
* * * * * *
988850 TATGTTTACGGTGCCTAATCCTAAAAAGAATAGGGATTAGTATGAGTATTCAAGTTTGTCGTACT
261 TATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATT
* *
988915 TAAGAGA-AAACTTTGATTCTATCAAAAATGGTGGAAA-AAAATCTTTTCTTGCGACACCAAAGT
326 TAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC
* * * * * * * * *
988978 TTCAATGTCATATATCGTAATGAAGGGCCTATGT-TTTTAGCTTCCTAGTCTTAAAAATAATCG-
391 TTCAATGTCATGTATCCTAATGAAGGG--AATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGA
* *
989041 GACTATTATGAGAATCGAGGCTT
454 GACTGTTATGAGAATCGATG-TT
* * * * *
989064 GTCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAAGGTAAAGAAAACATTTCCATGCAAA
1 GTCTTATTTAAAGTATAAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATGCAAA
* * * *
989129 AGAAAATCATTAACATCATTTATCCTAATGAGGATAATGTGTTTATAGCGCCCAATCACAAAAT-
66 AGAAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG
** * * ** * *
989193 AACAAAGATCATTACTAAAATCCATGTTTGTTTCATTCAAGGCATTAACTTAGACTTTACGAAAA
131 AATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAA
* * * ** ** *
989258 TAGGTGGGAAAAATGCGTTTCTTATGAAACCATTGCATCAATATGTTGTATCCTAATGAGAAGAC
196 TTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGAC
* * * * * * *
989323 TATGCTTAAGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGCTTATCGTACT
261 TATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATT
* * * * *
989388 TAAGAGACAAACTTTGATTCTATCAATAGTGGTGAAAATAAAAGCTTTTCTTAG-GACGCCAAAG
326 TAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTT-GCGACACCAAAG
* * * * ***
989452 -TATTAATGTCATGTATCTTAATAAAGGGAATGTGTTTTTGGCTTTCTTGTCTTGAAAAGAATGG
390 CT-TCAATGTCATGTATCCTAATGAAGGGAATGTG-TTTTGGCTTCCCAATCTTGAAAAGAATGG
* ** *
989516 TGACTGTTACAAGAATCAATGTAT
453 AGACTGTTATGAGAATCGATGT-T
* * * ** * * *
989540 GTCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATA-GGTAATTAAAAGATTTTCACGCAGA
1 GTCTTATTTAAAGTATAAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATGCAAA
* * * * * *
989604 AGGAAATCATTAATATCATTTATCCTAATCAAGG-GAATGTCTATATTGT-CCATAATCAAAAAA
66 AGAAAATCATTAATATCATTTATCCTAAT-GAGGAGAATGTGTTTATAGTGCC-TAATCACAAAA
* * *
989667 TGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGACTTGAACTTAGACTTTACCAA
129 TGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAA
* * * * * *
989732 AACTAG-AGGAAAAAATGCCTTTCTTGAGAAACCAAAGCCTCAATATCG-TGTATCTTAATGAG-
194 AATTGGTGGGAAAAAA-GCCTTTCTTGCGAAACCAAAGCATCAATAT-GATGTATCCTAATGAGA
* * * * * * * *
989794 AGAC--CGTTTAAGGTGACAAATCCTAAAAAGAATGGGGACTATTATCAGTATTCATGTTTGTCT
257 AGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCT
* * * **
989857 TATCTAAGAGATAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGTCAGTA
322 TATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCA
* * * * * * * * ** *
989922 AAGCTTTAATATCTTGCATCCCAATGAACGGATTGTGTTTTGCCTTTTCAATATTGAAAAGAATG
387 AAGCTTCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATG
*
989987 GAGACTGTTACGAGAATCGATGCTT
452 GAGACTGTTATGAGAATCGATG-TT
* * **
990012 GTCTTATTTAAAGGATAAAGTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTTTATGCAAA
1 GTCTTATTTAAAGTATAAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATGCAAA
* * * * **
990077 TA-AAAATCATTAATACCATTTATCCTAATAAGGAGATTGTGTTTATAGTGCCTAATTACTGAAT
66 -AGAAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAT
* * * * * ** *
990141 GAATGATGATCAATACTAAAATCAATGTTTGTCTCACTTGAGGCACAAACTTAGACTTTATAAAA
130 GAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAA
* * ** * * * * * * *
990206 AATGGTGGGAAAAAAGCTTTTCTTATGAAACCAAAGCGTCAATATGCTTTATCTTAAGGAAAAAA
195 ATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGA
* * ** * * *
990271 CTATGTTTGTGGTGCCTAATCTTGAAAAGAACAGGGATTAGTATAAGTTTTCATGTTTAT-TGTA
260 CTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCT-TA
* * ** *
990335 TTTAAGAAACAAACTTCGATTCTATCAAAAAAAGTGAAAAGAAAAGCTTTTCTTGCGACACCAAA
324 TTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAA
* * * *** *
990400 GCTTTAATGTCATGTATCCTAGTGAAAGGAATGTGTTTTTGGCTTCCTTGTCTTGAAAACAATGG
389 GCTTCAATGTCATGTATCCTAATGAAGGGAATGTG-TTTTGGCTTCCCAATCTTGAAAAGAATGG
*
990465 AGACTATTA-GAGAATCGATGCTT
453 AGACTGTTATGAGAATCGATG-TT
* * ** * * *
990488 GTCTTATTTAAGGTATGAACTTCAATTTAAAGGAAAATAAGGTAAAGAAAACATTTCCATGCAAA
1 GTCTTATTTAAAGTATAAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATGCAAA
* * * * *
990553 AGAGAATCATTAACATCATTTATCCTAATGAGAAGAAAGTGTTTATAGCGCCTAATCACAAAATG
66 AGAAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG
* * * *
990618 AACGAAGATCATTACTAGAATTCATGTTTGTCTCATTTAAGGCATTAACTTAGACTTTACAAAAA
131 AATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAA
* * * * * * *
990683 TTTGTGAGAAAAATGCCTTTCTTGCAAAACTAAAGGATCAATATGTTGTATCCTAATGAGAAGAC
196 TTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGAC
* * * * *
990748 TATGCTTATGGTGCCTAATCCTAAAAAGAACGGGGATTAGTATGAGTATTCATGTTTCTCGTATT
261 TATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATT
* * * * * *
990813 TAAGAGACAAACTTTAATTGTATAAAAAACGGTGAAAATAAAAGCTTTTCTTGCGACACCAAAGC
326 TAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC
* ** *
990878 ATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTATGGCTTCCCAGGCTTGAAAAGAATAGAG
391 TTCAATGTCATGTATCCTAATGAAGGGAATGTGTTT-TGGCTTCCCAATCTTGAAAAGAATGGAG
* * *
990943 ATTGTTATAAGAATCGGTGCTT
455 ACTGTTATGAGAATCGATG-TT
* * * * * * *
990965 GTCTTATATAAGGTATGAACTTTGATTTAAAGGAAAATAGGGTAAATAAAAGATTTCCACGCATA
1 GTCTTATTTAAAGTATAAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATGCAAA
* * * * * * * *
991030 AGGAAATCATTAGTATCATATATCCTAATCAGGAGAATGTGTATATTGTCCCTAATCAAAAAATG
66 AGAAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG
* *
991095 AATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGACATGAACTTAGACTTTACCAAAA
131 AATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAA
* * * * *
991160 CTAGTGGGAAAAATGCCTTTCTTGTGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAC
196 TTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGAC
* * * ** * * *
991225 CAT-TTGT-T-GTGCCTAATCTTGAAAAGAATGGGGATTAGTATAAACATTTATATTTGTCTTAC
261 TATGTT-TATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTAT
* * *
991287 TT-AGAAGACAAACTTTGATTCTATCAAAAATAGTGGAAAGAAAAGCTTTTCTAGGGACACCAAA
325 TTAAG-AGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAA
* * *
991351 GCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATTTTGAAAAGAGTGGA
389 GCTTCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGA
*
991416 GACTGTTGTGAGAATCGATGCTT
454 GACTGTTATGAGAATCGATG-TT
* * * * *
991439 GTCTTATTTAAAGTATAAACTTTAATTTTAAGGACAATAGGGTAAGGAAAACATTTCAATGCAAA
1 GTCTTATTTAAAGTATAAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATGCAAA
* * * * * *
991504 AGAAAATCATCAATATCATTTATGCTAAAGAGGAGAATGTGTTTATCGTTCCTAATCACAAAAAG
66 AGAAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG
* * * *
991569 AATAAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACGTTAGAAAAA
131 AATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAA
* * *
991634 TTGGTGGGAAAAAAACCTTTCTTGCAAAACCAAAGCATCAATGTGATGTATCCTAATGAGAAGAC
196 TTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGAC
* * * * * *
991699 TATGTTTATGGTGCCTAATCCTGGAAAGAATGGGGATTAGTGTGCA-TTTTCATATTTCTCGTAT
261 TATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATG-AGTATTCATGTTTGTCTTAT
* * * * * *
991763 TTAAGAGAAAAACTTTAATTCTATCATAAACGGTGTAAAGAAAAGCTTTTCTTGC-AGCATCAAA
325 TTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGA-CACCAAA
* * * * *
991827 GCAGT-AATGCCATGTATCCTAATGAAGGGAATGTGTTTTTGGATTCCTAGTCTTGAAAAGAATG
389 GC-TTCAATGTCATGTATCCTAATGAAGGGAATGTG-TTTTGGCTTCCCAATCTTGAAAAGAATG
*
991891 GAAACTGTTATGAGAATCGATGCTT
452 GAGACTGTTATGAGAATCGATG-TT
** * * * * * * *
991916 GTCTTACATAAGGTATGAACTTTAATTTAAAGGAAAATAGGGTAAAGAAAAGATTTTCGTGTAAA
1 GTCTTATTTAAAGTATAAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATGCAAA
* * * * * * *
991981 A-AGAAATCATTAATATCATTTAACTTAATGGGGAGAATCTGTATATAGTGCCTAATTAAAAAAT
66 AGA-AAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAT
* * * * * * *
992045 GAATGAAGATCATAACCAGAATCCATGTTTGCCTCATTCGAGGCTTGAACTTAGACTTAACGAAA
130 GAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAA
** * * *
992110 ATTGGTGGGAAAAATCCCTTTCTTGTGAAACTAAAGCATCAATATCG-TGTATGCTAATGAGAAG
195 ATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATAT-GATGTATCCTAATGAGAAG
* * * * * * *
992174 ACTA--CTTATGGTGCCTAATCCTAAAAAGAATGGGGGTTAGTATAAGTATTCGTCTTTGTTTTA
259 ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTA
* * * * * *
992237 TTTAGGAGACAAAATTTGTTTCTACCAAAAACGGTGGAAAGAAAAGCTTTTCTTATC-ACACCAA
324 TTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTT-GCGACACCAA
* * * * * *
992301 AGCTTCAATGTCATGCATCGTAATGAAAGGAAT-TGTTTTGGCTTCGCATTCTTGAAAAGATTGG
388 AGCTTCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGG
* * **
992365 AAACTATTATGAGAATTTATGTTT
453 AGACTGTTATGAGAATCGATG-TT
* * * * ** * *
992389 GT-TTATTTAAA-TGGTAAACCTTGACTTTAAGGAAAATAAGACAAATAAAAGATTTCTATGCAA
1 GTCTTATTTAAAGT-ATAAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATGCAA
* * * *
992452 AAGAAAATCATCAATATCAGTTATCCTAATAAGGAGAATGTGTTTAAAGTGCCTAATCACAAAAT
65 AAGAAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAT
* * *
992517 GAATGAAGATTATTACTAAAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGGCTTTACAAAA
130 GAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAA
* * *
992582 ATT--TGGACGAAAAAAGCCTTTGC-TGTGAAACCAAAGCATTAACATGATGTATCCTAATGAGA
195 ATTGGTGG--GAAAAAAGCCTTT-CTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGA
* * * **
992644 AGACTATGTTTATGCTACCAAATCCT-AAAA-AAACGGG----G-AT---TA---A-G-TTGTCT
257 AGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCT
* * * **
992694 TATTTAAGAGACAAACTTTGATT-TGATAAAAAATGGTGGAAAAAAAAGCTTTTCTTGCAATGCC
322 TATTTAAGAGACAAACTTTGATTCT-ATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACC
* * **
992758 AAAGATTCAATGTCATGCATCCTAATGAAAAGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAAT
386 AAAGCTTCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAAT
* *
992823 GGAGATTGTTATGAGAATCG--CTT
451 GGAGACTGTTATGAGAATCGATGTT
* *
992846 GTCTTATTTAAAAG-ATAAACTTTGATTTTAAGGAAAATAGGGTAATGAAAAGATTTCCACGCAA
1 GTCTTATTT-AAAGTATAAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATGCAA
* * * *
992910 AAAAAAATCGTTAATATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTGCTTAATCACAAAAT
65 AAGAAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAT
* * * * *
992975 GAGTGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAAGAACATAGACTATATAAAA
130 GAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAA
* * *
993040 ATTGGTGGGAAAAAAACCTTTCTTGTGAAACCAAAGCATCAATATGATGTATCCTAATGAGAATA
195 ATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGA
* * *
993105 CTATGTTTATGCTGCCTAAT-CTTAGAAAGAATGGGGATTAGCATGAGTATTCATGTTTGTCTTA
260 CTATGTTTATGGTGCCTAATCCTGA-AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTA
* * ** *
993169 TTTAAGAGACAAACTTTGATTCTACCAAAAATGGTGGAAAGAAAAGCTTTTCCTATGACACTAAA
324 TTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAA
* * * *
993234 GCTTTAATGTCATGCT-TCGTAATGAAAGGAATGTGTTTTGGCTTCCCATTCTTGAAAAGAATGG
389 GCTTCAATGTCATG-TATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGG
* *
993298 AGATTGTTATGAGAATCG--CTT
453 AGACTGTTATGAGAATCGATGTT
* *
993319 GTCTTATTTAAAAG-ATAAACTTTGATTTTAAGGAAAATAGGGTAATGAAAAGATTTCCACGCAA
1 GTCTTATTT-AAAGTATAAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATGC-A
* * * *
993383 AAAAAAAATCGTTAATATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTGCTTAATCACAAAA
64 AAAGAAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAA
* * * * *
993448 TGAGTGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAAGAACATAGACTATATAAA
129 TGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAA
* * *
993513 AATTGGTGGGAAAAAAACCTTTCTTGTGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAT
194 AATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAG
* * *
993578 ACTATGTTTATGCTGCCTAAT-CTTAGAAAGAATGGGGATTAGCATGAGTATTCATGTTTGTCTT
259 ACTATGTTTATGGTGCCTAATCCTGA-AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTT
* * ** *
993642 ATTTAAGAGACAAACTTTGATTCTACCAAAAATGGTGGAAAGAAAAGCTTTTCCTATGACACTAA
323 ATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAA
* * *
993707 AGCTTTAATGTCATGCT-TCGTAATGAAAGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATG
388 AGCTTCAATGTCATG-TATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATG
*
993771 GAGACTGTTATGAGAATCG--CTT
452 GAGACTGTTATGAGAATCGATGTT
* * * *
993793 GCCTTATTTAAAAG-ATAAACTTTGATTTTAGGGAAAATAGGGCAAAGAAAAGATTTCTATGCAA
1 GTCTTATTT-AAAGTATAAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATGCAA
* * * * *
993857 AAGAAAATCATCAATATCATTTATCCTAATTAGGAGAATATGTTTAAAGTGCCTAATCAAAAAAT
65 AAGAAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAT
* * * ** *
993922 GAATGAAGATCATTACTAAAATCCATATTTGTCTCATTTGATGCACAAACTTAGAGTTTACAAAA
130 GAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAA
* *
993987 ATTTGG-AGGAAAAAACCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAG
195 A-TTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAG
* * * **
994051 ACTATGTTTATGCT-ACTAATCTTGAAAAGAACAGGGA-T--TA--AG--TT-A------TCTTA
259 ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTA
* * ** *
994101 TTTAAGAGATAAACTTTGATT-TGATAAAAAATGGTGGAAAGAAAAGCTTTTCTTTTGATACCAA
324 TTTAAGAGACAAACTTTGATTCT-ATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAA
* *
994165 AGCTTCAATGTCATGCATCCTAAAGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGG
388 AGCTTCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGG
* *
994230 AGATTATTATGAGAATCGATGCTT
453 AGACTGTTATGAGAATCGATG-TT
* * * * * *
994254 GTCTTATTTAAAGGATAAACTTTGATTTGAAGGCAAACAAGGTATAAGAAAAGATTTCCACGCAA
1 GTCTTATTTAAAGTATAAACTTTGATTTTAAGGAAAATAGGGTA-AAGAAAAGATTTCCATGCAA
* * * *
994319 AAGAAAATCATCAATATCATTTATCCTAAAGAGAAGAATGTGTTTATAGTGCCTAATAACAAAAT
65 AAGAAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAT
* * * *
994384 GAATGAAGATTATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTATACTATAGAAAA
130 GAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAA
* * * * *
994449 ATTAGTGGGAAAAAAACCTATCTTGCGAAGCCAAAGCATCAATATGATGTATCCTAATAAGAAGA
195 ATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGA
* * * * * * * *
994514 CTATGTTTATGGTTCCTAATCTTAGAAAA-AATAGGGG-TT-GTTGTGACTACTCATATTTCTCG
260 CTATGTTTATGGTGCCTAATCCT-GAAAAGAAT-GGGGATTAG-TATGAGTATTCATGTTTGTCT
* * * * * * *
994576 TATTTTAGAGACAAACTTTTATTCTATCAAAAATGATGGAAAGAAAAACTTTTCTTACGAAACAA
322 TATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCA
* * * *
994641 AAGCATCACTGTCATGTATCCTAATGAAGGGAATGTGGTTTTGGATT-CCAGTCTTGAAAAGAAT
387 AAGCTTCAATGTCATGTATCCTAATGAAGGGAATGT-GTTTTGGCTTCCCAATCTTGAAAAGAAT
* *
994705 GGAGACTGTTATGAGAATCAATGCGT
451 GGAGACTGTTATGAGAATCGATG-TT
* * * * **
994731 GTCTTATTTAAGGTATGAACTTTAATTTAAAGGAAAATAGGGTAAAGAAAAGATTTTTATGCAAA
1 GTCTTATTTAAAGTATAAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATGCAAA
* * *
994796 AGGAAATCATTAATATCATTTATCCTAATAAGGGGAA--TG----T-GTG----A--A-AAAATG
66 AGAAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG
* * * * * *
994847 AATGAAGATCATAACTAGAATCCATGTTTATCTCATTTGAGACATGAACTTGGACTCTGCAAAAA
131 AATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAA
* * *
994912 TTGGTGGGAAAAATA-CCTTT-TTTCTGATACCAAAGCATCAATATCG-TGCATCCTAATGAGAA
196 TTGGTGGGAAAAA-AGCCTTTCTTGC-GAAACCAAAGCATCAATAT-GATGTATCCTAATGAGAA
* * * * *
994974 GAC--TGTTTATGGTGCCTAATTCTAAAAAGAAT-GGGATAAGTATGAGTATTCATATTTGTCAT
258 GACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTT
* * * * * *
995036 ATTTAGGAGACAAACTTTGATTCGATCAAAAACGATGGAAATAAAAGTTTTTCTTGCGACACCAA
323 ATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAA
* * * * *
995101 AGCATCAATGTCATGTTTCCAAATGAAGGGAAAGTGTTTTGCCTTCCCAATCTTGAAAAGAATGG
388 AGCTTCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGG
995166 AGACTGTTATGAGAATCGATGTTT
453 AGACTGTTATGAGAATCGATG-TT
* * * *
995190 GTCTTATTTAAAG-GT-AA-----A---TAAGG-CAA-A--G---A-AAAA-ATTTCCAAGTAAA
1 GTCTTATTTAAAGTATAAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATGCAAA
*
995236 AGAAAATCATTAATATCATTTATCCTAATGAGAAGAATGTGTTTATAGTGCCTAATCACAAAATG
66 AGAAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG
* * **
995301 AATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGGACAAAGACTTTACAAAAA
131 AATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAA
* * * * *
995366 TTGGTGGGAAGAAAGCCTTTCTTGTGATACCAAATCATCAATATCATGTATCCTAATGAGAAGAC
196 TTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGAC
* * * * * * * *
995431 TATGTTTAAGGTGCCTAATCTTGAAAAGAATGGGGATCAGTACGACTATTCTTTTTTGTCCTATT
261 TATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATT
* * * * *
995496 TAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAAAAAAGCTTTTCCTGCAACCCCAAAGC
326 TAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC
* * * * * * *
995561 ATCATTGTCATGTATCCTAACGAAGGAAATGTGTTATAGCTTCGCAATCTTGAAAAGAATGGAGA
391 TTCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGA
*
995626 CTGTTACGAGAATCGATGGTT
456 CTGTTATGAGAATCGAT-GTT
* * * * * * *
995647 GTCTTAATCAAGGTATGAACTTTGATTTAAAGGAAAATAAGGTAGAA-AAAAGATTTCTATGCAA
1 GTCTTATTTAAAGTATAAACTTTGATTTTAAGGAAAATAGGGTA-AAGAAAAGATTTCCATGCAA
* * *
995711 AA-AAAATCATCAATATCATTTATCCTAATGAAGAGAATGTGTTTGTAGTGCCTAATCACAAAAT
65 AAGAAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAT
* * * * ** * *
995775 GAATGAGGATCATTACTAAAATCCATGTTTGTCCCATTTGAGACACAAACTTAGACTTTATAAAT
130 GAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAA
* * * * * *
995840 ATTGGTGGGAAAAATGCCTTTCTTGCAAAACCAAAGCGTCAATATGGTGAATCCAAATGAGAAGA
195 ATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGA
* * * *
995905 CTATGTTTATGCTACCTAATCCTGAAAAG-A-----A-CAG---G-G-ATT-AAG-TTGTCTTAT
260 CTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTAT
* * * * *
995956 TTAAGAGACAAACTTTCATGT-GATAAAAAATGGTGGAAAGAAAAGCTTTTCTTGGGATACCAAA
325 TTAAGAGACAAACTTTGAT-TCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAA
* * * * * *
996020 CCTTCAGTGTCAAGCATCCTAATGAAAGAAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGA
389 GCTTCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGA
* * *
996085 GACTATTGTGAGAATTGATGCTT
454 GACTGTTATGAGAATCGATG-TT
* * * * ** *
996108 GTCTTATTTATAGAATAAACTTTGATTTTAATGAAAATAAGGTAGGGAAAAGATTTCCACGCAAA
1 GTCTTATTTAAAGTATAAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATGCAAA
** * * * *
996173 AGAAAATTGTCAATATCATTTATCCTAAAGATGAGAATGTGTTTATAATGCCTAATCACAAAATG
66 AGAAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG
* * * * * *
996238 AATGAAGATCATCACCAAAATCCATGTTTGTCTTATTTGAGGCATGAACTTAGAGTATACAAAAA
131 AATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAA
* * * * *
996303 GTGGT-GGAAAAAAACCTTTCTTACGAAACCAAAGCATCAATATGATATATCCTAATAAGAAGAC
196 TTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGAC
* * * * * * *
996367 TATGTTTATGCTGCCTAATCTTGGAAAGAATGGGGATTAGTGTGAGTATTCATATTTCTCATATT
261 TATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATT
* *** *
996432 TAATAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTTTAACACAAAAGC
326 TAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC
* *
996497 TTCAATGTCCTGTATCCTAATGAAGGGAATGTGTTTTTGGATT-CCAATCTTGAAAAGAATGGAG
391 TTCAATGTCATGTATCCTAATGAAGGGAATGTG-TTTTGGCTTCCCAATCTTGAAAAGAATGGAG
* * **
996561 ACTATTACGATTATCGATGCTT
455 ACTGTTATGAGAATCGATG-TT
* * * * * *
996583 ATCTTATTT-AAGATATGAACATT-A-ATAAAGGAAAATAGGGTAAAGAAAAGATTTTCATGCAA
1 GTCTTATTTAAAG-TATAAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATGCAA
* * * * *
996645 AGGGAAAA-CATTAATATCATTTATCCTAATGAGGGGAATGTGTATATAATGCCTAATCAAAAAA
65 A-AGAAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAA
* * *
996709 TGAATGAAGATCATAACTATAATCCATGTTTGTCTTATTTGAGGCATGAACTTAGACTTTACAAA
129 TGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAA
* *
996774 AATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAG
194 AATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAG
* * *
996839 AC--TGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGGAAGAGTATTCATGTTTGTGTTA
259 ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTA
* * *** *
996902 TTTAGGAGACAAGCTTTGATT-TGATCAAAAACAATGGAAAGAAAAGCTTTTCTTGTGACACCAA
324 TTTAAGAGACAAACTTTGATTCT-ATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAA
* * * * *
996966 AGCATCAATGTCAAGTTTCCAAATAAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAATA-AATG
388 AGCTTCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAA-AGAATG
* *
997030 GAGACTGTTACGAGAATCGATGGAT
452 GAGACTGTTATGAGAATCGAT-GTT
* * * * * * *
997055 GTCTTAATT-AAGAAATTAACTTTGATTTAAAAGAAAATAGGGCAAAGAAAAGATTTCCATACAA
1 GTCTTATTTAAAG-TATAAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATGCAA
* * * *
997119 AAGAAAATCATCAATATCCTTTATCCTAGTGAGGAGAATGTGCTTATAGTGCCTAATCACAAAAT
65 AAGAAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAT
* * * * * * * **
997184 GAATGAGGATCATTACTTGATTCAATGTTTATTTCATTTGAGACACAAACTTAGACTTTA-AAAA
130 GAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAA
* ** ** * * * * *
997248 TATTGGTGGGAAAAATGCCTTTCTTATGAAACCAAAGTGTTATTATGGTGAATCCTAATGAAAAG
195 -ATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAG
* * * * * * * * *
997313 ATTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGAGTAGTTTGAGTTTTTAAGTTAGTCGTA
259 ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTA
* * * ** *
997378 TTTAGGAGACAAACTTTGAATCGATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCAACACCAAA
324 TTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAA
* * * * * * **
997443 GCATAAATGTCATGTTTCCAAATGAAGGGAACGTGTTTTGGTTTCCCAATCTTGAAAAGAATAAA
389 GCTTCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGA
* *
997508 GACGGTTCTGAGAATCGATGCTT
454 GACTGTTATGAGAATCGATG-TT
* * * ** * *
997531 ATCTTATTTAAAGGATGAACTTTGATTTTAAATAAAATAGGGCAAAGAAAAGATTTCTATGCAAA
1 GTCTTATTTAAAGTATAAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATGCAAA
* * *
997596 AGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTAAAGTGCCTAATCAGAAAATG
66 AGAAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG
* ** *
997661 AATGAAGATCGTTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTCACAAAAA
131 AATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAA
* * * **
997726 TTGGTGAGAAAAAAACCTTTCTTGCGAAACCAAAACATCAAT-TAGATGTATCCTAATGAGATTA
196 TTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATAT-GATGTATCCTAATGAGAAGA
* * * * * *
997790 CTATGTTTA-GGCTGCCTAATCCT-AAAAAAATGGAGATTACTATGAGTATTAAAGTTTGTCATA
260 CTATGTTTATGG-TGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTA
* * ** * * *
997853 TTTAAGAGAAAAACTTTGATTCTACCAAAAACAGTAGAAAGAAAAGCTTTTGTTGCGACGCCAAA
324 TTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAA
** * * * * *
997918 GCTTCAATGTCATCCATCATAGTGAAGGGAATGTATTTTGACTTCCCAATCTTAAAAAGAATGGA
389 GCTTCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGA
* ** *
997983 GACTATTGCGAGAATCGATGCTG
454 GACTGTTATGAGAATCGATG-TT
* * *
998006 GTCTTATTTAAA-TGATAAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTCTATGCAA
1 GTCTTATTTAAAGT-ATAAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATGCAA
* * * * * *
998070 AAGAAAATCATCAGTATCATTTACCCTAATGAGGAGAACGTGTTTAAAGTGCC-ACATCAAAAAA
65 AAGAAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA-ATCACAAAA
** *
998134 TGAATGAAGATCATTGTTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAT
129 TGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAA
* * * *
998199 AGTTTGTTGGAAAAAAACCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAACT-AGAA
194 AATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAA-TGAGAA
* * * * * *
998263 GACTATGTTGATGCTACCTAATCTTAAAAAGAA---CG----G---G-G-ATT-A-G-TTGTCTT
258 GACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTT
* * * * *
998313 ATTTAAGTGACAAACTTTGATT-TGATAAAAAAAGGTGGAAAGAAAAGCTATTCTTGCGATACCA
323 ATTTAAGAGACAAACTTTGATTCT-ATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCA
* * * * *
998377 GAGCTTCAATGTCATGCATCCTAATGAAAGGAATGTGTTTTAGCTTCCCAATCTTAAAAAGAATG
387 AAGCTTCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATG
*
998442 GAGACTGTTATAAGAATCGATGTTT
452 GAGACTGTTATGAGAATCGATG-TT
** * *
998467 GTCTTATTTAAAGGGTAAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAA-ATTTTCACGCAAA
1 GTCTTATTTAAAGTATAAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATGCAAA
* * ** * *
998531 TGAAAATCATCAATATCATTTATCCTAAAAAAGAGAATGTGTTTATAATGCCTAATCACAAAATG
66 AGAAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG
* ** * *
998596 AATGGAGATCATTACTAGAATCTTTGTTTGTCTCATTTGAGGAACA-G-CCTTAGA-TGATACAA
131 AATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGG--CATGAACTTAGACT-TTACAA
* * * * * * *
998658 AAATTGGTAGAAAAAAAACCTTTCTTGCGAAACTAAAGCATCAATATGATATGTCCGAATGAGAA
193 AAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAA
* * * * * * *
998723 GACTATGTTTATGGTGCCTAATCTTGGAAAGAATGGGGATTAGTGTGAGTTTTCATATTTCTCAT
258 GACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTT
* * * *
998788 ATTTAAGAGATAAA-TTTGATTCTATCAAAAACGGTGGAAAAAAAAGCTTTTCTTGTGAC-CCTA
323 ATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACC-A
* * * * * * * *
998851 AAGCATCAATGTCTTATATCCTAATTAAGGGGAATGTGTTTTTGGATTCCTAGTCTTGAAAGGAA
387 AAGCTTCAATGTCATGTATCCTAATGAA-GGGAATGTG-TTTTGGCTTCCCAATCTTGAAAAGAA
* * * *
998916 TGGAGACTATTACGATAATCGATTCTT
450 TGGAGACTGTTATGAGAATCGA-TGTT
* * * * * * *
998943 GTCTTATTTAAGGTATGAACTTTAATTTAAAAGAAAATAGGGTAAAAAAAAAAGATTTTCATGCA
1 GTCTTATTTAAAGTATAAACTTTGATTTTAAGGAAAATAGGGT--AAAGAAAAGATTTCCATGCA
* * * * * * *
999008 AAAGGAAATCATTAATATCATTTATCCTAATAAGGAGAATCTATATATAGTGCCTAATTAGAAAA
64 AAAGAAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAA
* * * * * *
999073 TGAATGAAGATCATAACCAGAATCCATGTTTGCCTCATTCGAGGCTTGAACTTAGACTTAACAAA
129 TGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAA
* * * *
999138 AATTGGTGGGAAAAAAGCCTTTCTTGTGAAACTAAGGCATCAATATCATGTATCCTAATGAGAAG
194 AATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAG
* * *
999203 ACTA--TTTATGGTGCCTAATCTTGAAAAAAATGGGGATTAGTATAAGTATTCATGTTTGTCTTA
259 ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTA
* * ** * *** *
999266 TTTAAGAGACAAACTTTGATTCTACCAAAAACGGTGGATGGAAAAACTTTTCTTATTACAACAAA
324 TTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAA
** * * * * * *
999331 GCTTCAATGTCATACATCGTAACGAAGAGAATGTGTTTTGGCTTCCTATTCTTGAAAAGATTGGA
389 GCTTCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGA
* ** * *
999396 GACTATTGCGAGAATGGATACTT
454 GACTGTTATGAGAATCGAT-GTT
* * * * * **
999419 GTCCTATTTAAA-TGGTAAACTTTGATTTTAAGGAAAATAAGGCAAGGAAAAGATTTGTATGCAA
1 GTCTTATTTAAAGT-ATAAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATGCAA
* * * * * *
999483 AAGAAAATCCTAAATATCATTTATCCTAATGAGGAGAATGTGGTTAAAGTCCCTAATGA-AAAAT
65 AAGAAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAA-
* * *
999547 TGAATGAAGGTCATTACTAAAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAA
129 TGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAA
* * *
999612 AATT--TAGAGGAAAATAGCCTTTCTTGCGAAGCCAAAGCATTAATATGATGTATCCTAATGAGA
194 AATTGGT-G-GGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGA
* * * * * *
999675 AGAATATGTTTATGCTACCTAATCCTAAAAAGAA-CGGG----G-AT---TA---A-G-TTGCCT
257 AGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCT
*
999726 TATTTAAGAGACAAACTTTGATT-TGAT-AAAAATGGTGGAAAGAAAAGCTTTTCTTGCGATACC
322 TATTTAAGAGACAAACTTTGATTCT-ATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACC
* * * * * *
999789 AAAGCTTTAAT-ACAATGCATCCTAATAAAGGGAATATGCTTTGGCTTCCCAATCTTGAAAAGAA
386 AAAGCTTCAATGTC-ATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAA
*
999853 TGGAGACTGTTATGAGAATCGATGCTC
450 TGGAGACTGTTATGAGAATCGATG-TT
* * * * *
999880 GTCTTATTTAATCG-ATAAACTTTGATTTTAAAGAAAATAAGGTAAAGGAAAGATTTTCA--CAT
1 GTCTTATTTAA-AGTATAAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATGCA-
* * *
999942 AAA-AAAATCATCAATA-CTGTTTATCCTAAGGAGGAGAATGTGTTTATAGTGCCTAATCACAAA
64 AAAGAAAATCATTAATATC-ATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAA
* * ** *
1000005 ATGAATGAAGATCACTACTAGAATCCCTGTTTGTCTCATTTGAGAAACGAACTTAGACTTTACAA
128 ATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAA
*** * * * * *
1000070 ATGGTGGTGGGAAAAATGTCTTTCTT-CTAAAACCAAAGCATCAATATAATGTATCCTAAAGAGA
193 AAATTGGTGGGAAAAAAGCCTTTCTTGC-GAAACCAAAGCATCAATATGATGTATCCTAATGAGA
* * * * * * * **
1000134 AGATTATATTTATGGTGCCTTATCTTGAAAA-TAGGGGGATTAGTATGACTATTCACATTTGTCT
257 AGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCT
* ** * *
1000198 AATTTAAGAGTTAAACTTTGATTCTATCAAAAATGGTAGAAAGAAAAGCTTTTCTTTCGACACCA
322 TATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCA
* * * * * *
1000263 AAGCATCAATGTCATGTATCTTAAAGAAAGGAATGTGTTTTGGCTTCCCAATATTGAAAATAATG
387 AAGCTTCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATG
* *
1000328 GAGACTATTACGAGAATCGATGCTT
452 GAGACTGTTATGAGAATCGATG-TT
** * * * *
1000353 GTCTTATTTAGGGGATGAACTGTGGTTTTAAGG-AAA-A---T------AAG--------GC---
1 GTCTTATTTAAAGTATAAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATGCAAA
* *
1000396 ---AAA--A--AA-ATCATTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCACAAAATT
66 AGAAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG
** * * * *
1000453 AATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGTTGCATGGAGTTTGACTTTATAAAAA
131 AATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAA
* * *
1000518 TTGGAT-GGAAAAATGCCTTTCTTGCAAAACTAAAGCATCAATATGATGTATCCTAATGAGAAGA
196 TTGG-TGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGA
* * * ** ** *
1000582 CTATGCTTACGGTGCCTAATCTTGAAAAGAACAGGGATTAGTATGAGTATAAATGTTTGTCATAT
260 CTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTAT
* * * ** * *
1000647 TTAAGAAACAGACTTTGCTTCTATCAAAAACAGTGGAAAGAGAAGCTTTTCTTGTGACACCAAAG
325 TTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAG
*
1000712 CATCAATGT
390 CTTCAATGT
1000721 TGTTAGGATC
Statistics
Matches: 11298, Mismatches: 1928, Indels: 662
0.81 0.14 0.05
Matches are distributed among these distances:
440 42 0.00
441 4 0.00
442 3 0.00
445 176 0.02
446 95 0.01
447 4 0.00
448 3 0.00
449 4 0.00
450 3 0.00
451 1 0.00
452 1 0.00
453 2 0.00
454 114 0.01
455 2 0.00
456 26 0.00
457 177 0.02
458 387 0.03
459 435 0.04
460 278 0.02
461 627 0.06
462 653 0.06
463 198 0.02
464 28 0.00
465 7 0.00
466 2 0.00
467 15 0.00
468 17 0.00
469 6 0.00
470 9 0.00
471 23 0.00
472 611 0.05
473 1415 0.13
474 1721 0.15
475 1492 0.13
476 1572 0.14
477 890 0.08
478 81 0.01
479 173 0.02
480 1 0.00
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.31
Consensus pattern (475 bp):
GTCTTATTTAAAGTATAAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATGCAAA
AGAAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG
AATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAA
TTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGAC
TATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATT
TAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC
TTCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGA
CTGTTATGAGAATCGATGTT
Found at i:1001103 original size:13 final size:13
Alignment explanation
Indices: 1001085--1001109 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1001075 TAGCCAAACT
1001085 TGTATCGATACAA
1 TGTATCGATACAA
1001098 TGTATCGATACA
1 TGTATCGATACA
1001110 CAAAAAATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1003358 original size:21 final size:21
Alignment explanation
Indices: 1003325--1003369 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
1003315 TTGCAAGTTG
*
1003325 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
1003347 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
1003367 AAA
1 AAA
1003370 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:1006200 original size:21 final size:21
Alignment explanation
Indices: 1006167--1006211 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
1006157 TTGCAAGTTG
*
1006167 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
1006189 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
1006209 AAA
1 AAA
1006212 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:1010122 original size:13 final size:13
Alignment explanation
Indices: 1010104--1010129 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1010094 ACATTTTTCT
1010104 TTGTATCGATACA
1 TTGTATCGATACA
1010117 TTGTATCGATACA
1 TTGTATCGATACA
1010130 GGGTGATTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:1010293 original size:20 final size:20
Alignment explanation
Indices: 1010250--1010295 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
1010240 AAATCTTTTG
1010250 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
1010271 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
1010291 CAAAA
1 CAAAA
1010296 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:1012675 original size:13 final size:13
Alignment explanation
Indices: 1012657--1012681 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1012647 TAGCCAAACT
1012657 TGTATCGATACAA
1 TGTATCGATACAA
1012670 TGTATCGATACA
1 TGTATCGATACA
1012682 CAAAAAATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1015578 original size:19 final size:20
Alignment explanation
Indices: 1015551--1015600 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
1015541 ATCTTTGCAA
* *
1015551 GTATTGATACAGTG-GTCAT
1 GTATCGATACAGTGCATCAT
* *
1015570 GTATCGATACTGTGCATTAT
1 GTATCGATACAGTGCATCAT
1015590 GTATCGATACA
1 GTATCGATACA
1015601 TCTGAAGGTG
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 12 0.48
20 13 0.52
ACGTcount: A:0.28, C:0.14, G:0.22, T:0.36
Consensus pattern (20 bp):
GTATCGATACAGTGCATCAT
Found at i:1018090 original size:473 final size:471
Alignment explanation
Indices: 1015882--1018393 Score: 2866
Period size: 473 Copynumber: 5.3 Consensus size: 471
1015872 TAACAGTGTT
* * *
1015882 AGTATTCATGTTTGTCTTATTTTAGAGACAAGCTTTGATTCCATCAAAAACGGTGGAAAGAAAAG
1 AGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAG
** * * ** *
1015947 CTTTTCCTATGACACAAAAGCTTCAATGTCCTGCATCCTAATGAATGGAATGTGTTTTAGCTTCC
66 CTTTTCCTGCGACACCAAAGCTTCAATGTCATGCATCCTAAT-AAACGAATGTGTTTTGGCTTCC
* * * * * *
1016012 CAATCTTGAAAAGAATGAAGACTGTTACGAGAATCGGTGCTTGTCATATTTAAAGGATGAATTTT
130 CAATCTTGAAAAGAATGGAGACTATTGCGAGAATCGATGCTTGTCTTATTTAAAGGATGAACTTT
* * * * * *
1016077 TATCTAAAGGAAAATAGGGCAAA-AAGAGGATTTCCATGCAAAAGAAAATCATCAATATCATGTA
195 GAT-TTATGGAAAATAGGGCAAAGAA-AAGATTTTCATGCAAAAGAAAATCATCAATATCATTTA
* * * * * * *
1016141 TCCTAATGAGGAGGATGTGTTTATAGTGCTTTATCACAAAATGAATAAAGACCACTACTCGAATC
258 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC
* * * *
1016206 AATGTTTGCCTCATTTCAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCT
323 CATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGAGGGAAAAATGCCTTTCT
* ** * *
1016271 TGTGAAACCAAAGCATCAAAATCG-TGTA-CCGTAATGAGAAG-CTATGCCTATGCTACCTAATC
388 TGTGAAACCAAAGCATCAATAT-GATGTATCC-TAATGAGAAGACTATGTTTATGGTGCCTAATC
**
1016333 ATAAAAAGAATGGGGATTAGTATG
451 -T--TGAGAATGGGGATTAGTATG
* * * * *
1016357 AGTATTCAAGTTTGTCTTATTT-A-AGACAAACTTTGATTCTATCTATAACGGTGGAAACAAAAA
1 AGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAG
* * * *
1016420 CTTTTCCCGTGACACCAAAGCTTCAATATCATGCAT-CTGAATAAAGGCAATGTGTTTTGGCTTC
66 CTTTTCCTGCGACACCAAAGCTTCAATGTCATGCATCCT-AATAAACG-AATGTGTTTTGGCTTC
* * * * * * *
1016484 CCAATCTTGAAAAGAATGGACACTGTTGTGGGAATCGAAGCTTTTATTATTTAAAGGATGAACTT
129 CCAATCTTGAAAAGAATGGAGACTATTGCGAGAATCGATGCTTGTCTTATTTAAAGGATGAACTT
* * * * *
1016549 TGATTTTTAGGAAAATAGGGCAAATAAATGTTTTTCATGCAAAAAAAAATCATCAATATCATTTA
194 TGATTTAT-GGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTA
* * *
1016614 TCATAATGAGGAGAATGTGTTTATAGTGCTTAATCACAAAATG-ATAGAAGATCATTACTAAAAT
258 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT-GAAGATCATTACTAGAAT
* * * * * * * *
1016678 CCATATCTGTCTCATTTAAGGCATGAACTCAAACTTTACGAAAAA-TGGTGGGAAAAACGCCTTT
322 CCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAC-AAAAATTGGAGGGAAAAATGCCTTT
* * * * *
1016742 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGGGAAGACTATATTTATGTTGCCTAATC
386 CTTGTGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT-
** *
1016807 CTAAAAAGAATGGCGATTAGTATG
450 CT--TGAGAATGGGGATTAGTATG
* * *
1016831 AGTATTCATGTTTATCTTATTTAAGAGATAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAG
1 AGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAG
* ** * ** * *
1016896 CTCTTT-CTGCGACACCAAAGCATCAATCCCTTGTTTCCAAAT-GACGGCAATGTGTTTTGGCTT
66 CT-TTTCCTGCGACACCAAAGCTTCAATGTCATGCATCCTAATAAAC-G-AATGTGTTTTGGCTT
* * * ** * *
1016959 CCTAGTCTTGAAAAGAATGAAGAC-ACTT-ATATGAATCGATACTTTTCTTATTT-AAGGAATGA
128 CCCAATCTTGAAAAGAATGGAGACTA-TTGCGA-GAATCGATGCTTGTCTTATTTAAAGG-ATGA
* *
1017021 ACTTTGATTTTTAGGAAAATAGGGCAAAGAAATGATTTTCATGCAAAAGAAAATCATCAATATCA
190 ACTTTGATTTAT-GGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCA
* * * * * * *
1017086 GTTATCCAAATAAAGATCATTGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
254 TTTATCCTAATGAGGA-GAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
***
1017151 GAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTTTGAAAATT-GATGGGAAAAATGC
318 GAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGA-GGGAAAAATGC
* * * *
1017215 CTTTCTTGTGAAACAAAAGCATCAATATCG-TGTATCCTAAAGAGAAG-CGTATGTATATGTTGC
382 CTTTCTTGTGAAACCAAAGCATCAATAT-GATGTATCCTAATGAGAAGAC-TATGTTTATGGTGC
**
1017278 CTAATCTTGAAAAGAATGGGGATTAGTAAA
445 CTAATCTTG---AGAATGGGGATTAGTATG
** * *
1017308 AGTATTTGTGTTTGTCTTATTTCAGAGACAAACTTTGATTCTATTAAAAACGGTGGAAAGAAAAG
1 AGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAG
* * ** *
1017373 CTTTTCCTACGACACCAAAGCTTCAATGTCATGCATCATAATGAAAAAAATGTGTTTTGGCTTCT
66 CTTTTCCTGCGACACCAAAGCTTCAATGTCATGCATCCTAAT-AAACGAATGTGTTTTGGCTTCC
* * *
1017438 CAATCTTGAAAACAATGGAGACTATTGCAACAATCGATGCTTGTCTTATTTTTAAAGGATGAACT
130 CAATCTTGAAAAGAATGGAGACTATTGCGAGAATCGATGCTTGTCTTA--TTTAAAGGATGAACT
* *
1017503 TTGATTTTAAGGAAAATAGGGCACAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTT
193 TTGA-TTTATGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTT
*
1017568 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCGTTACTAGAAT
257 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* * * * * *
1017633 CCATATTTATCTCATTTGTGGCACGAGCTTAGACTTTACAAAAATTAGAGGGAAATGA-GCCTTT
322 CCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGAGGGAAA-AATGCCTTT
* * * * * * *
1017697 CTTGCGAAACCAAGGCATTAGTATGATTTATCCTAAAGAGAAGACTATGTTTATGGTGCCTTATC
386 CTTGTGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC
* *
1017762 TTGTGAATAGGGATTAGTATG
451 TTGAGAATGGGGATTAGTATG
* * * * **
1017783 AGTATTCATGTTTGTCTTATTTAAGAGATAAATTTTGATTCCATTAAAAACGGTAAAAAGAAAAG
1 AGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAG
* * * * * * *
1017848 TTTTTCTTGCGAAACCAAAGCTTTAATGTCTTGCATCCTATTCAAACGAATTTGTTTTGGCTTCC
66 CTTTTCCTGCGACACCAAAGCTTCAATGTCATGCATCCTAAT-AAACGAATGTGTTTTGGCTTCC
* * *
1017913 CAACCTTGAAAAGAATGGAGACTATTGGGAGAATCGATGCTTGTCTTATTTAAAGGGTGAACTTT
130 CAATCTTGAAAAGAATGGAGACTATTGCGAGAATCGATGCTTGTCTTATTTAAAGGATGAACTTT
*
1017978 GAATTTATGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTAT
195 G-ATTTATGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTAT
*
1018043 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCC
259 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
* * *
1018108 ATGTTTGTCTCATTTGAGGCACGAACTTAAACTTTACAAAAATTGGCGGGAAAAAAGCCTTTCTT
324 ATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGAGGGAAAAATGCCTTTCTT
* * * *
1018173 GTGAAACCAAACCATAAATATCATGTA-CTCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT
389 GTGAAACCAAAGCATCAATATGATGTATC-CTAATGAGAAGACTATGTTTATGGTGCCTAATCTT
1018237 GAAAAGAATGGGGATTAGTATG
453 G---AGAATGGGGATTAGTATG
* * * * *
1018259 AGTATTCATGTGTGTCTTATTTAAGAGGCAAACTTTTATTCTATCAAAAACAGTGAAAAGAAAAG
1 AGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAG
* * * * **
1018324 CTTTTCCTGCGGCACCAAAGCTTCAAGGTCATGTATTCTAATGAAGGGAATGTGTTTTTGGCTTC
66 CTTTTCCTGCGACACCAAAGCTTCAATGTCATGCATCCTAAT-AAACGAATGTG-TTTTGGCTTC
1018389 CCAAT
129 CCAAT
1018394 TGTTAGGATC
Statistics
Matches: 1725, Mismatches: 265, Indels: 92
0.83 0.13 0.04
Matches are distributed among these distances:
472 11 0.01
473 572 0.33
474 68 0.04
475 194 0.11
476 318 0.18
477 316 0.18
478 158 0.09
479 81 0.05
480 7 0.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (471 bp):
AGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAG
CTTTTCCTGCGACACCAAAGCTTCAATGTCATGCATCCTAATAAACGAATGTGTTTTGGCTTCCC
AATCTTGAAAAGAATGGAGACTATTGCGAGAATCGATGCTTGTCTTATTTAAAGGATGAACTTTG
ATTTATGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCC
TAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGAGGGAAAAATGCCTTTCTTGT
GAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAG
AATGGGGATTAGTATG
Found at i:1018378 original size:951 final size:944
Alignment explanation
Indices: 1015882--1018393 Score: 3146
Period size: 951 Copynumber: 2.6 Consensus size: 944
1015872 TAACAGTGTT
* * *
1015882 AGTATTCATGTTTGTCTTATTTTAGAGACAAGCTTTGATTCCATCAAAAACGGTGGAAAGAAAAG
1 AGTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAG
* ** * * ** *
1015947 CTTTTCCTATGACACAAAAGCTTCAATGTCCTGCATCCTAATGAATGGAATGTGTTTTAGCTTCC
66 -TTTTTCTGCGACACCAAAGCTTCAATGTCTTGCATCCTAAT-AAACGAATGTGTTTTGGCTTCC
* * * *
1016012 CAATCTTGAAAAGAATGAAGACTGTTACGAGAATCGGTGCTTGTCATATTTAAAGGATGAATTTT
129 CAATCTTGAAAAGAATGAAGACTATTA-GAGAATCGATGCTTGTCTTATTTAAAGGATGAACTTT
* * * * * *
1016077 TATCTAAAGGAAAATAGGGCAAA-AAGAGGATTTCCATGCAAAAGAAAATCATCAATATCATGTA
193 GAT-TTATGGAAAATAGGGCAAAGAA-AAGATTTTCATGCAAAAGAAAATCATCAATATCATTTA
* * * * * * *
1016141 TCCTAATGAGGAGGATGTGTTTATAGTGCTTTATCACAAAATGAATAAAGACCACTACTCGAATC
256 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATC
* * *
1016206 AATGTTTGCCTCATTTCAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCT
321 CATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCT
** *
1016271 TGTGAAACCAAAGCATCAAA-ATCGTGTAC-CGTAATGAGAAGCTATGCCTATGCTACCTAATCA
386 TGTGAAACCAAAGCAT-AAATATCGTGTACTC-TAATGAGAAGCTATGTATATGCTGCCTAATCA
* *
1016334 TAAAAAGAATGGGGATTAGTATGAGTATTCAAGTTTGTCTTATTTAAGA-CAAACTTTGATTCTA
449 TGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGCAAACTTTGATTCTA
* * * * * * * *
1016398 TCTATAACGGTGGAAACAAAAACTTTTCCCGTGACACCAAAGCTTCAATATCATGCATCTGAATA
514 TCAAAAACGGTGGAAAGAAAAGCTTTTCCTGCGACACCAAAGCTTCAATGTCATGCATCT-AATG
* * * ****
1016463 AAGGCAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGACACTGTTGTGGGAATCGAAGCTTT
578 AAGGAAATGTGTTTTGGCTTCCCAATCTTGAAAACAATGGACACTATTGCAACAATCGAAGCTTT
* * * *
1016528 TATTATTTAAAGGATGAACTTTGATTTTTAGGAAAATAGGGCAAATAAATGTTTTTCATGCAAAA
643 TATTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAA
*
1016593 AAAAATCATCAATATCATTTATCATAATGAGGAGAATGTGTTTATAGTGCTTAATCACAAAATGA
708 AAAAATCATCAATATCATTTATCATAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
* *
1016658 TAGAAGATCATTACTAAAATCCATATCTGTCTCATTTAAGGCATGAACTCAAACTTTACGAAAAA
773 TAGAAGATCATTACTAAAATCCATATCTATCTCATTTAAGGCACGAACTCAAACTTTACGAAAAA
* * * *
1016723 TGGTGGGAAAAACGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGGGAAGACT
838 TAGAGGGAAAAACGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAAAGAGAAGACT
*
1016788 ATATTTATGTTGCCTAATCCTAAAAAGAATGGCGATTAGTATG
903 ATATTTATGGTGCCTAATCCT-AAAAGAATGGCGATTAGTATG
* * *
1016831 AGTATTCATGTTTATCTTATTTAAGAGATAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAG
1 AGTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAG
* * ** ** * *
1016896 CTCTTTCTGCGACACCAAAGCATCAATCCCTTGTTTCCAAAT-GACGGCAATGTGTTTTGGCTTC
66 -TTTTTCTGCGACACCAAAGCTTCAATGTCTTGCATCCTAATAAAC-G-AATGTGTTTTGGCTTC
* * * * *
1016960 CTAGTCTTGAAAAGAATGAAGAC-ACTTATATGAATCGATACTTTTCTTATTT-AAGGAATGAAC
128 CCAATCTTGAAAAGAATGAAGACTA-TTAGA-GAATCGATGCTTGTCTTATTTAAAGG-ATGAAC
* * *
1017023 TTTGATTTTTAGGAAAATAGGGCAAAGAAATGATTTTCATGCAAAAGAAAATCATCAATATCAGT
190 TTTGATTTAT-GGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATT
* * * * * * *
1017088 TATCCAAATAAAGATCATTGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGA
254 TATCCTAATGAGGA-GAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGA
*** *
1017153 ATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTTTGAAAATTGATGGGAAAAATGCCTT
318 ATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTT
* * * *
1017218 TCTTGTGAAACAAAAGCATCAATATCGTGTA-TCCTAAAGAGAAGCGTATGTATATGTTGCCTAA
383 TCTTGTGAAACCAAAGCATAAATATCGTGTACT-CTAATGAGAAGC-TATGTATATGCTGCCTAA
* ** ** *
1017282 TCTTGAAAAGAATGGGGATTAGTAAAAGTATTTGTGTTTGTCTTATTTCAGAGACAAACTTTGAT
446 TCATGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAG-CAAACTTTGAT
* *
1017347 TCTATTAAAAACGGTGGAAAGAAAAGCTTTTCCTACGACACCAAAGCTTCAATGTCATGCATCAT
510 TCTATCAAAAACGGTGGAAAGAAAAGCTTTTCCTGCGACACCAAAGCTTCAATGTCATGCATC-T
** * * *
1017412 AATGAAAAAAATGTGTTTTGGCTTCTCAATCTTGAAAACAATGGAGACTATTGCAACAATCGATG
574 AATGAAGGAAATGTGTTTTGGCTTCCCAATCTTGAAAACAATGGACACTATTGCAACAATCGAAG
*
1017477 CTTGTCTTATT-TTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGCACAGAAAAGATTTTCA
639 C-T-T-TTATTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCA
* *
1017541 TGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC
701 TGCAAAAAAAAATCATCAATATCATTTATCATAATGAGGAGAATGTGTTTATAGTGCCTAATCAC
* * * ** * * *
1017606 AAAATGA-ATGAAGATCGTTACTAGAATCCATATTTATCTCATTTGTGGCACGAGCTTAGACTTT
766 AAAATGATA-GAAGATCATTACTAAAATCCATATCTATCTCATTTAAGGCACGAACTCAAACTTT
* * * * * *
1017670 AC-AAAAATTAGAGGGAAATGA-GCCTTTCTTGCGAAACCAAGGCATTAGTATGATTTATCCTAA
830 ACGAAAAA-TAGAGGGAAA-AACGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAA
* * ***
1017733 AGAGAAGACTATGTTTATGGTGCCTTAT-CT-TGTGAATAGG-GATTAGTATG
893 AGAGAAGACTATATTTATGGTGCCTAATCCTAAAAGAAT-GGCGATTAGTATG
* * **
1017783 AGTATTCATGTTTGTCTTATTTAAGAGATAAATTTTGATTCCATTAAAAACGGTAAAAAGAAAAG
1 AGTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAG
* * * *
1017848 TTTTTCTTGCGAAACCAAAGCTTTAATGTCTTGCATCCTATTCAAACGAATTTGTTTTGGCTTCC
66 TTTTTC-TGCGACACCAAAGCTTCAATGTCTTGCATCCTAAT-AAACGAATGTGTTTTGGCTTCC
* * * *
1017913 CAACCTTGAAAAGAATGGAGACTATTGGGAGAATCGATGCTTGTCTTATTTAAAGGGTGAACTTT
129 CAATCTTGAAAAGAATGAAGACTATT-AGAGAATCGATGCTTGTCTTATTTAAAGGATGAACTTT
*
1017978 GAATTTATGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTAT
193 G-ATTTATGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTAT
1018043 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCC
257 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCC
* * *
1018108 ATGTTTGTCTCATTTGAGGCACGAACTTAAACTTTACAAAAATTGGCGGGAAAAAAGCCTTTCTT
322 ATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTT
* * * * *
1018173 GTGAAACCAAACCATAAATATCATGTACTCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTG
387 GTGAAACCAAAGCATAAATATCGTGTACTCTAATGAGAAG-CTATGTATATGCTGCCTAATCATG
* *
1018238 AAAAGAATGGGGATTAGTATGAGTATTCATGTGTGTCTTATTTAAGAGGCAAACTTTTATTCTAT
451 AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGA-GCAAACTTTGATTCTAT
* * * * *
1018303 CAAAAACAGTGAAAAGAAAAGCTTTTCCTGCGGCACCAAAGCTTCAAGGTCATGTATTCTAATGA
515 CAAAAACGGTGGAAAGAAAAGCTTTTCCTGCGACACCAAAGCTTCAATGTCATGCA-TCTAATGA
*
1018368 AGGGAATGTGTTTTTGGCTTCCCAAT
579 AGGAAATGTG-TTTTGGCTTCCCAAT
1018394 TGTTAGGATC
Statistics
Matches: 1327, Mismatches: 202, Indels: 65
0.83 0.13 0.04
Matches are distributed among these distances:
948 7 0.01
949 215 0.16
950 136 0.10
951 343 0.26
952 243 0.18
953 132 0.10
954 12 0.01
955 233 0.18
956 6 0.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (944 bp):
AGTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAG
TTTTTCTGCGACACCAAAGCTTCAATGTCTTGCATCCTAATAAACGAATGTGTTTTGGCTTCCCA
ATCTTGAAAAGAATGAAGACTATTAGAGAATCGATGCTTGTCTTATTTAAAGGATGAACTTTGAT
TTATGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTA
ATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGT
TTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGTGA
AACCAAAGCATAAATATCGTGTACTCTAATGAGAAGCTATGTATATGCTGCCTAATCATGAAAAG
AATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGCAAACTTTGATTCTATCAAAAA
CGGTGGAAAGAAAAGCTTTTCCTGCGACACCAAAGCTTCAATGTCATGCATCTAATGAAGGAAAT
GTGTTTTGGCTTCCCAATCTTGAAAACAATGGACACTATTGCAACAATCGAAGCTTTTATTATTT
AAAGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAAAAAATCA
TCAATATCATTTATCATAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGATAGAAGAT
CATTACTAAAATCCATATCTATCTCATTTAAGGCACGAACTCAAACTTTACGAAAAATAGAGGGA
AAAACGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAAAGAGAAGACTATATTTAT
GGTGCCTAATCCTAAAAGAATGGCGATTAGTATG
Found at i:1018802 original size:20 final size:20
Alignment explanation
Indices: 1018757--1018808 Score: 79
Period size: 19 Copynumber: 2.6 Consensus size: 20
1018747 GTAGCCAAAC
**
1018757 TTGTATCGATACACCAAGTA
1 TTGTATCGATACACCAAAAA
1018777 -TGTATCGATACACCAAAAA
1 TTGTATCGATACACCAAAAA
1018796 TTGTATCGATACA
1 TTGTATCGATACA
1018809 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 17 0.59
20 12 0.41
ACGTcount: A:0.38, C:0.19, G:0.13, T:0.29
Consensus pattern (20 bp):
TTGTATCGATACACCAAAAA
Found at i:1021038 original size:21 final size:21
Alignment explanation
Indices: 1021005--1021049 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
1020995 TTGCAAGTTG
*
1021005 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
1021027 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
1021047 AAA
1 AAA
1021050 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:1022872 original size:15 final size:15
Alignment explanation
Indices: 1022852--1022882 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
1022842 TAAAAATGTC
*
1022852 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
1022867 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
1022882 C
1 C
1022883 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:1024979 original size:13 final size:13
Alignment explanation
Indices: 1024961--1024986 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1024951 ACATTTTTCT
1024961 TTGTATCGATACA
1 TTGTATCGATACA
1024974 TTGTATCGATACA
1 TTGTATCGATACA
1024987 GGGTGATTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:1027548 original size:13 final size:13
Alignment explanation
Indices: 1027530--1027555 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1027520 TACACCAAGT
1027530 ATGTATCGATACA
1 ATGTATCGATACA
1027543 ATGTATCGATACA
1 ATGTATCGATACA
1027556 CCAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1027553 original size:32 final size:33
Alignment explanation
Indices: 1027512--1027575 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
1027502 TAGCCAAACT
**
1027512 TGTATCGATACACCAAGTA-TGTATCGATACAA
1 TGTATCGATACACCAAAAATTGTATCGATACAA
1027544 TGTATCGATACACCAAAAATTGTATCGATACA
1 TGTATCGATACACCAAAAATTGTATCGATACA
1027576 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 17 0.59
33 12 0.41
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACCAAAAATTGTATCGATACAA
Found at i:1029449 original size:158 final size:158
Alignment explanation
Indices: 1029287--1030887 Score: 798
Period size: 158 Copynumber: 10.1 Consensus size: 158
1029277 GAGTCGATGG
* ** *
1029287 TTGTCTTATTTAATGTATGAACTTTGATTTAAAAGAAAATAGGGCAAAGAAAAG-ATTT-TATGC
1 TTGTCTTATTTAAGGTACAAACTTTGATTTAACA-AAAATAGGGCAAAGAAAAGCATTTCTATGC
* * * * *
1029350 AAAAAAAAATCATCAATATCATTTATCCTAACGAGGAGAATGTGTTTATAGTGCCTAAACAAAAA
65 AAAACAAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAACTAAAA
*
1029415 ATGAATGAAGATCAACACTAGAATCCATGT
130 ATGAATGGAGATCAACA-TAGAATCCATGT
* * *** * ** *
1029445 TTGTCTCATTTAAGGCACAAACTAAAACTTT-ACAAAAATTGGTGGGAAG-AAAGCCTTTCT-TG
1 TTGTCTTATTTAAGGTACAAACTTTGA-TTTAACAAAAATAGG-GCAAAGAAAAGCATTTCTATG
** * * * * * * ** *
1029507 TGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTATTCCTGA
64 CAAAACAAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA-AACTAA
* * ** * * *
1029572 AAA-GAATGGGGATTAGTATGAGTATTCAAGT
128 AAATGAATGGAGATCAACAT-AGAATCCATGT
* * * *
1029603 TTATCTTATTTAAGGGACAAACTTTGATTCTATCAAAAATAGTGG-AAAGAAAAGCTTTTCCTAT
1 TTGTCTTATTTAAGGTACAAACTTTGATT-TAACAAAAATAG-GGCAAAGAAAAGCATTT-CTAT
* * * ** * * * * * *
1029667 G--ACACGAAAGCTTCAAGGTCATGTATTCTATTGAAGG-GAATGTGTTTTTAGCTTCCCAATCT
63 GCAAAACAAAAGCATCAATATCATGTATCCTAATG-AGGAGAATGTGTTTATAG-TGCCTAAACT
** * * * *
1029729 TGAAATGAATGGAGACTGCTACA-AGAGTCGATGG
126 AAAAATGAATGGAGA-T-CAACATAGAATCCATGT
* * *
1029763 TTGTCTTATTTAATGTACGAACTTTGATTTAA-AGGAAAATAGGGCAAAGAAAAG-ATTTTTATG
1 TTGTCTTATTTAAGGTACAAACTTTGATTTAACA--AAAATAGGGCAAAGAAAAGCATTTCTATG
* * * * *
1029826 CAAAAAAAAATCATCAATATCATTTATCCTAACGAGGA-AATGTGTTTATAGTGCCTAAACAAAA
64 CAAAACAAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAACTAAA
*
1029890 AATGAATGAAGATCAACACTAGAATCCATGT
129 AATGAATGGAGATCAACA-TAGAATCCATGT
* * *** * ** *
1029921 TTGTCTCATTTAAGGCACAAACTAAAACTTT-ACAAAAATTGGTGGGAAG-AAAGCCTTTCT-TG
1 TTGTCTTATTTAAGGTACAAACTTTGA-TTTAACAAAAATAGG-GCAAAGAAAAGCATTTCTATG
** * * * * * * ** *
1029983 TGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTATTCCTGA
64 CAAAACAAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA-AACTAA
* * ** * * *
1030048 AAA-GAATGGGGATTAGTATGAGTATTCAAGT
128 AAATGAATGGAGATCAACAT-AGAATCCATGT
* * * *
1030079 TTATCTTATTTAAGGGACAAACTTTGATTCTATCAAAAATAGTGG-AAAGAAAAGCTTTTCCTAT
1 TTGTCTTATTTAAGGTACAAACTTTGATT-TAACAAAAATAG-GGCAAAGAAAAGCATTT-CTAT
* * * ** * * * * * *
1030143 G--ACACGAAAGCTTCAAGGTCATGTATTCTATTGAAGG-GAATGTGTTTTTAGCTTCCCAATCT
63 GCAAAACAAAAGCATCAATATCATGTATCCTAATG-AGGAGAATGTGTTTATAG-TGCCTAAACT
** * * * *
1030205 TGAAATGAATGGAGACTGCTACA-AGAGTCGATGG
126 AAAAATGAATGGAGA-T-CAACATAGAATCCATGT
* * *
1030239 TTGTCTTATTTAATGTACGAACTTTGATTTAA-AGGAAAATAGGGCAAAGAAAAG-ATTTTTATG
1 TTGTCTTATTTAAGGTACAAACTTTGATTTAACA--AAAATAGGGCAAAGAAAAGCATTTCTATG
* * * * *
1030302 CAAAAAAAAATCATCAATATCATTTATCCTAACGAGGAGAATGTGTTTATAGTGCCTAAACAAAA
64 CAAAACAAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAACTAAA
*
1030367 AATGAATGAAGATCAACACTAGAATCCATGT
129 AATGAATGGAGATCAACA-TAGAATCCATGT
* * *** * * ** * *
1030398 TTGTCTCATTTAAGGCACAAACTAAAATTTTACAAAAATTGGTGGGAAG-AAAGCCTTTCT-TGT
1 TTGTCTTATTTAAGGTACAAACTTTGATTTAACAAAAATAGG-GCAAAGAAAAGCATTTCTATGC
* * * * * * * ** ** *
1030461 GAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTTTCTATTCCTGAA
65 AAAACAAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA-AACTAAA
* * ** * * *
1030526 AA-GAATGGGGATTAGTATGAGTATTCAAGT
129 AATGAATGGAGATCAACAT-AGAATCCATGT
* * * *
1030556 TTATCTTATTTAAGGGACAAACTTTGATTCTATCAAAAATAGTGG-AAAGAAAAGCTTTTGCTAT
1 TTGTCTTATTTAAGGTACAAACTTTGATT-TAACAAAAATAG-GGCAAAGAAAAGCATTT-CTAT
* * * ** * * * * * *
1030620 G--ACACCAAAGCTTCAAGGTCATGTATTCTATTGAAGG-GAATGTGTTTTTAGCTTCCCAATCT
63 GCAAAACAAAAGCATCAATATCATGTATCCTAATG-AGGAGAATGTGTTTATAG-TGCCTAAACT
** * * *
1030682 TGAAATGAATGGAGACTACTACA-AGAATCGATGC
126 AAAAATGAATGGAGA-T-CAACATAGAATCCATGT
* * *** * * *
1030716 ATGTCTTCTTTGAA-GTATGTACTTTGATTTTTAA-AGGAAAATAAGGAAAAGAAAAG-ATTTCC
1 TTGTCTTATTT-AAGGTACAAACTTTGA--TTTAACA--AAAATAGGGCAAAGAAAAGCATTTCT
* *
1030778 ATGCAAAACAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATCA-TGCC-AAA-
61 ATGCAAAACAAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTAT-AGTGCCTAAAC
*
1030840 TCACAAAATGAATGAAGATCATTAC-TAGAATCCATGT
125 T-A-AAAATGAATGGAGATCA--ACATAGAATCCATGT
*
1030877 TTGTCTCATTT
1 TTGTCTTATTT
1030888 GAGCCATGAA
Statistics
Matches: 1039, Mismatches: 323, Indels: 159
0.68 0.21 0.10
Matches are distributed among these distances:
156 4 0.00
157 65 0.06
158 345 0.33
159 285 0.27
160 230 0.22
161 55 0.05
162 54 0.05
163 1 0.00
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.31
Consensus pattern (158 bp):
TTGTCTTATTTAAGGTACAAACTTTGATTTAACAAAAATAGGGCAAAGAAAAGCATTTCTATGCA
AAACAAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAACTAAAAA
TGAATGGAGATCAACATAGAATCCATGT
Found at i:1030742 original size:477 final size:474
Alignment explanation
Indices: 1028362--1038294 Score: 10989
Period size: 477 Copynumber: 20.9 Consensus size: 474
1028352 CTTCTTTGAA
* *
1028362 GATTTAATGGAAAATAAGGAAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTAT
1 GATTTAAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTAT
* * * * * * * *
1028427 CGTAATGAGAAGAATGCGTTTATCA-TGCCAAATCACAAAATGAATGATGATCATTACTGGAATC
66 CCTAATGAGGAGAATGTGTTTAT-AGTGCCTAATCACAAAATGAATAAAGATCAATACTAGAATC
* * * * * **
1028491 CATGTTTATCTCATTTGAGCCACAAACTTACACTTTACAAAAACTGGTTTGAAAAATG-CTTTCT
130 CATGTTTGTCTCATTTGAGGCACGAACTTAAACTTTACAAAAATTGGTGGGAAAAA-GCCTTTCT
* * *
1028555 TGTCG-AATCAAAGCATCAATAT-GATGTATCCTAATAAGAAGACTATGTTTACGGTGCCTAATC
194 TGT-GAAACCAAAGCATCAATATCG-TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC
* ** * * * *
1028618 CTAAAAAGAATAAGTATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAA-TTTAATTC
257 CTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGGGACAAACTTTGATTC
* * *
1028682 TATCAAAAAC-GATGGAAACAAAAGCTTTTCTTACAACACCAAAGCTTCAACGTCATGT-TTCTA
322 TATCAAAAACAG-TGGAAAGAAAAGCTTTTCTT--GACACCAAAGCTTCAATGTCATGTATTCT-
* * * * * * *
1028745 AATGAAAGGAATGTCTTTTT-GCTTCCCAATCTTGAAAAGAATGGAGTCTGTTATGAGAATCAAT
383 AATGAAGGGAATGTGTTTTTGGCTTCCCAATCTTGAAATGAATGGAGACTATTACGAGAATCGAT
* * *
1028809 GCTTGTCTTATTTAAAGGACGTACTTT
448 GCTTGTCTTATTTAAAGTATGCACTTT
* * **
1028836 GATTTTAAGGAAAATAAGGCAAAGAAAAGAATTT-CATGTAATGGAAAATCATCAATATCATTTA
1 GATTTAAAGGAAAATAAGGCAAAGAAAAG-ATTTCCATGCAAAAGAAAATCATCAATATCATTTA
* * *
1028900 TCTTAATGCA-GAGAATGTGTTTATGGAGCCTAATCACAAAATGAATAAAGATCAATACTAGAAT
65 TCCTAATG-AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCAATACTAGAAT
* * * * * *
1028964 CCAAGTTTGTCTCTTTTGAGGCGCAAACTTAAACTTTGCAAAAATTGGTGGAAATAAAGCCTTTC
129 CCATGTTTGTCTCATTTGAGGCACGAACTTAAACTTTACAAAAATTGGTGGGAA-AAAGCCTTTC
*
1029029 TTGTGAAACCAAAGCATCCATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCC
193 TTGTGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCC
* * * * * * * ** *
1029094 TCAAAAGATTAGGGATTAGTATGACTATTCGTATTTGTCCTATGCAAGAGACAAACTTTGATT-T
258 TGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGGGACAAACTTTGATTCT
* *
1029158 CATCAAAAACAGTGGAAAAAAAAGCTTTTCTTG-CAACCCTAAAGCTTCAATGTCATGTATTCCA
323 -ATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGAC-A-CC-AAAGCTTCAATGTCATGTATTCTA
** ** * ** * *
1029222 ATGAAGGGAATGTG-TTTTACCTTCCCAATCTTGAAAAAAATGGATACTGCTACAAGAGTCGATG
384 ATGAAGGGAATGTGTTTTTGGCTTCCCAATCTTGAAATGAATGGAGACTATTACGAGAATCGATG
* * *
1029286 GTTGTCTTATTTAATGTATGAACTTT
449 CTTGTCTTATTTAAAGTATGCACTTT
* * * *
1029312 GATTTAAAAGAAAATAGGGCAAAGAAAAGATTT-TATGCAAAAAAAAATCATCAATATCATTTAT
1 GATTTAAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTAT
* * * * *
1029376 CCTAACGAGGAGAATGTGTTTATAGTGCCTAAACAAAAAATGAATGAAGATCAACACTAGAATCC
66 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCAATACTAGAATCC
* * *
1029441 ATGTTTGTCTCATTTAAGGCACAAACTAAAACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTT
131 ATGTTTGTCTCATTTGAGGCACGAACTTAAACTTTACAAAAATTGGTGGGAA-AAAGCCTTTCTT
*
1029506 GTGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTATTCCTG
195 GTGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTG
* *
1029571 AAAAGAATGGGGATTAGTATGAGTATTCAAGTTTATCTTATTTAAGGGACAAACTTTGATTCTAT
260 AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGGGACAAACTTTGATTCTAT
* * * *
1029636 CAAAAATAGTGGAAAGAAAAGCTTTTCCTATGACACGAAAGCTTCAAGGTCATGTATTCTATTGA
325 CAAAAACAGTGGAAAGAAAAGCTTTT-CT-TGACACCAAAGCTTCAATGTCATGTATTCTAATGA
* ** * * *
1029701 AGGGAATGTGTTTTTAGCTTCCCAATCTTGAAATGAATGGAGACTGCTACAAGAGTCGATGGTTG
388 AGGGAATGTGTTTTTGGCTTCCCAATCTTGAAATGAATGGAGACTATTACGAGAATCGATGCTTG
* * *
1029766 TCTTATTTAATGTACGAACTTT
453 TCTTATTTAAAGTATGCACTTT
* ** *
1029788 GATTTAAAGGAAAATAGGGCAAAGAAAAGATTTTTATGCAAAAAAAAATCATCAATATCATTTAT
1 GATTTAAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTAT
* * * * *
1029853 CCTAACGAGGA-AATGTGTTTATAGTGCCTAAACAAAAAATGAATGAAGATCAACACTAGAATCC
66 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCAATACTAGAATCC
* * *
1029917 ATGTTTGTCTCATTTAAGGCACAAACTAAAACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTT
131 ATGTTTGTCTCATTTGAGGCACGAACTTAAACTTTACAAAAATTGGTGGGAA-AAAGCCTTTCTT
*
1029982 GTGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTATTCCTG
195 GTGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTG
* *
1030047 AAAAGAATGGGGATTAGTATGAGTATTCAAGTTTATCTTATTTAAGGGACAAACTTTGATTCTAT
260 AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGGGACAAACTTTGATTCTAT
* * * *
1030112 CAAAAATAGTGGAAAGAAAAGCTTTTCCTATGACACGAAAGCTTCAAGGTCATGTATTCTATTGA
325 CAAAAACAGTGGAAAGAAAAGCTTTT-CT-TGACACCAAAGCTTCAATGTCATGTATTCTAATGA
* ** * * *
1030177 AGGGAATGTGTTTTTAGCTTCCCAATCTTGAAATGAATGGAGACTGCTACAAGAGTCGATGGTTG
388 AGGGAATGTGTTTTTGGCTTCCCAATCTTGAAATGAATGGAGACTATTACGAGAATCGATGCTTG
* * *
1030242 TCTTATTTAATGTACGAACTTT
453 TCTTATTTAAAGTATGCACTTT
* ** *
1030264 GATTTAAAGGAAAATAGGGCAAAGAAAAGATTTTTATGCAAAAAAAAATCATCAATATCATTTAT
1 GATTTAAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTAT
* * * * *
1030329 CCTAACGAGGAGAATGTGTTTATAGTGCCTAAACAAAAAATGAATGAAGATCAACACTAGAATCC
66 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCAATACTAGAATCC
* * * *
1030394 ATGTTTGTCTCATTTAAGGCACAAACTAAAATTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTT
131 ATGTTTGTCTCATTTGAGGCACGAACTTAAACTTTACAAAAATTGGTGGGAA-AAAGCCTTTCTT
** *
1030459 GTGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTTTCTATTCCTG
195 GTGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTG
* *
1030524 AAAAGAATGGGGATTAGTATGAGTATTCAAGTTTATCTTATTTAAGGGACAAACTTTGATTCTAT
260 AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGGGACAAACTTTGATTCTAT
* * *
1030589 CAAAAATAGTGGAAAGAAAAGCTTTTGCTATGACACCAAAGCTTCAAGGTCATGTATTCTATTGA
325 CAAAAACAGTGGAAAGAAAAGCTTTT-CT-TGACACCAAAGCTTCAATGTCATGTATTCTAATGA
* * * *
1030654 AGGGAATGTGTTTTTAGCTTCCCAATCTTGAAATGAATGGAGACTACTACAAGAATCGATGCATG
388 AGGGAATGTGTTTTTGGCTTCCCAATCTTGAAATGAATGGAGACTATTACGAGAATCGATGCTTG
* * *
1030719 TCTTCTTTGAAGTATGTACTTT
453 TCTTATTTAAAGTATGCACTTT
* *
1030741 GATTTTTAAAGGAAAATAAGGAAAAGAAAAGATTTCCATGCAAAACAAAATCATCAATATCATTT
1 GA--TTTAAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTT
* * *
1030806 ATCCTAATGAGGAGAATGTGTTTATCA-TGCCAAATCACAAAATGAATGAAGATCATTACTAGAA
64 ATCCTAATGAGGAGAATGTGTTTAT-AGTGCCTAATCACAAAATGAATAAAGATCAATACTAGAA
* * * * **
1030870 TCCATGTTTGTCTCATTTGAGCCATGAATTTAAACTTTACAAAAACTGGTTTGAAAAATGCCTTT
128 TCCATGTTTGTCTCATTTGAGGCACGAACTTAAACTTTACAAAAATTGGTGGGAAAAA-GCCTTT
* * * * * *
1030935 CTTGTGAAATCAAAGCGTCAATAT-GAAGTATCCT-ATGAGAAGGCTATGATTACGGTGCCTAAT
192 CTTGTGAAACCAAAGCATCAATATCG-TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT
* * * * *
1030998 CCTAAAAAGAATGGGTATTAGTATGAGTACTCATGTTTGT-TGTATTTAAGAGACAAATTTTGAT
256 CCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCT-TATTTAAGGGACAAACTTTGAT
** * *
1031062 TCTATCAAAAACAGTATAAAAAGAAAAGCTTTTTTTTGCAACACCAAAGCCTCAATGTCATGT-T
320 TCTATCAAAAACAG--TGGAAAGAAAAGC-TTTTCTTG--ACACCAAAGCTTCAATGTCATGTAT
* * * * *
1031126 TCCAAATGAAGGGAATGTGTTTTT-GCTTCCCAATCTTGAAAAGAATGGAGTCTGTTATGAGAAT
380 T-CTAATGAAGGGAATGTGTTTTTGGCTTCCCAATCTTGAAATGAATGGAGACTATTACGAGAAT
**
1031190 TAATGCTTGTCTTATTTAAAAG-ATGCACTTT
444 CGATGCTTGTCTTATTT-AAAGTATGCACTTT
* * * * **
1031221 GATTTTAAGAAAAATAAGGCATAGAAAAGATTTCCATGTAATGGAAAATCATCAATATCATTTAT
1 GATTTAAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTAT
* * * *
1031286 CTTAATGAGGAGAATGTGTTTATGGAGCCTAATCACAAAATGAATAAAGATCAATACTACAATCC
66 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCAATACTAGAATCC
* * * * *
1031351 AAGTTTGTCTC-TTTGGAGGCTCGGAGTTAAACTTTACAAAAATTGGTGGAAATAAAGCCTTTCT
131 ATGTTTGTCTCATTT-GAGGCACGAACTTAAACTTTACAAAAATTGGTGGGAA-AAAGCCTTTCT
* ** * *
1031415 TATGAAATTAAAGCATCAATATCGTGTCTCCTAATGAAAAGACTATGTTTATGGTGCCTAATCCT
194 TGTGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT
* * * * * * *
1031480 CAAAAGATTGGGTATTAGTATGACTATTCATATTTGTCCTATTTAAGAGACAAACTTTGATT-TC
259 GAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGGGACAAACTTTGATTCT-
* * * *
1031544 ATCAAAAACGGTGGAAAGAAAAGCTTTTCTT-ACAACCCCAAATCATCAATGTCATGTATTCCAA
323 ATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGAC-A--CCAAAGCTTCAATGTCATGTATTCTAA
* * * ** * ** * *
1031608 TAAAGGGATTGCG-TTTTACCTTCCCAATCTTGAAA-AAATTGGAGACTGCTACAAGAGTCGATG
385 TGAAGGGAATGTGTTTTTGGCTTCCCAATCTTGAAATGAA-TGGAGACTATTACGAGAATCGATG
* *
1031671 GTTGTCTTATTTAAGGTATG-ACTTT
449 CTTGTCTTATTTAAAGTATGCACTTT
* * * *
1031696 GATTTAATGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATAAATATCATTTAT
1 GATTTAAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTAT
* * * * * * * *
1031761 CCTAATAAAGAGAATGTGCTTATCGTGCCTGATCCCAAAATGAATGAAGATCATTACTAGAATCC
66 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCAATACTAGAATCC
* * * * * **
1031826 ATGTTTGTCTCATTTGAGTCATGAACTTAGACATTACAAAAACTGGTTTGAAAAATGCCTTTCTT
131 ATGTTTGTCTCATTTGAGGCACGAACTTAAACTTTACAAAAATTGGTGGGAAAAA-GCCTTTCTT
* ** * * * *
1031891 GTGAAACCAGAGTGTAAATAT-GATCTATCCTAACGAGAAGACTATGTTTATGGTGCCTAATCTT
195 GTGAAACCAAAGCATCAATATCG-TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT
* ** * * * * * *
1031955 GAAAAGAACGGGTTTTAGTATGAGTGTTGATGTTTAT-TGTATTTAAGAGATAGACTTTGATTCT
259 GAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCT-TATTTAAGGGACAAACTTTGATTCT
* * ** * *
1032019 ATCAAAAACAATGGATAGAAAAGCTTTTCTTGCGACACCAAAGCTTCAATGTTTTGTTTTCAAAT
323 ATCAAAAACAGTGGAAAGAAAAGCTTTTCTT--GACACCAAAGCTTCAATGTCATGTATTCTAAT
** * * * * * * *
1032084 GAAAAGAATGT-ATTTTCGCTTCCTAATCTTGAAAAGAATGGAGTA-TGTTATGAGAATCAATGC
386 GAAGGGAATGTGTTTTTGGCTTCCCAATCTTGAAATGAATGGAG-ACTATTACGAGAATCGATGC
* *
1032147 TTGTCTTATTTATAGGATGCACTTT
450 TTGTCTTATTTAAAGTATGCACTTT
* * * * **
1032172 GATTTTAAGGAAAATAGGGCAAAGTAAAGATTTCCATGTAATGGAAAATCATCAATATCATTTAT
1 GATTTAAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTAT
* * ** * *
1032237 CTTAATGAGGAGAAAGTGTTTACGGAGCCTAATCACAAAATGAATAAAGATCAACACTAGAATCC
66 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCAATACTAGAATCC
* * * * *
1032302 AAGTTTGTCTCTTTTGAGGCACAAACTTAAACTTTACAAAAATTAGTGGAAAGAAAGCCTTTCTT
131 ATGTTTGTCTCATTTGAGGCACGAACTTAAACTTTACAAAAATTGGTGGGAA-AAAGCCTTTCTT
* * * * **
1032367 GTGAAACTAAAGCATCGATATTGTATATTATAATGAGAAGACTATGTTTATGGTGCCTAATCCTG
195 GTGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTG
* * * * * *
1032432 AAAAGATTGGGGATTAGTATGACTATTCATATTTGTCCTATTTAAGAGACAAACTTTGATTTTAT
260 AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGGGACAAACTTTGATTCTAT
* * * *
1032497 CAAAAACGGTGGAAAGAAAAGATTTTCTTGCAACCCCAAAGCATCAATGTCATGTA-TCATAATG
325 CAAAAACAGTGGAAAGAAAAGCTTTTCTTG--ACACCAAAGCTTCAATGTCATGTATTC-TAATG
* * **
1032561 AAGAGAATGTGTTTTTGGCTTCCCAATCTTGAAATAAATGGAGACTATTACGAGAGCCGATGCTT
387 AAGGGAATGTGTTTTTGGCTTCCCAATCTTGAAATGAATGGAGACTATTACGAGAATCGATGCTT
**
1032626 GTCTTATTTATTGTATGCACTTT
452 GTCTTATTTAAAGTATGCACTTT
* * * * * *
1032649 GATTTAAGGGAAAATGAGGAAAAGAAAATATTTCCATGCAAAAGAAAATCATCAATTTCAATTAT
1 GATTTAAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTAT
* *
1032714 CCTAATGAGGAGAATGTGTTTATCGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCC
66 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCAATACTAGAATCC
* * * * * * * **
1032779 ATGTTTGTGTTATTTGAGGCATGAACTTAGACTTTACGATAATTGATGGGAAAAATGCAATTCTT
131 ATGTTTGTCTCATTTGAGGCACGAACTTAAACTTTACAAAAATTGGTGGGAAAAA-GCCTTTCTT
* ** * * *
1032844 GCGAAAGTAAAGCATCAATATCGTGTATCCTAATGAGAAGTCTATGTTCATGTTGCCTAATCCTG
195 GTGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTG
* * * * *
1032909 AAAAGAATGGCGATTAGTATGAGTATTCACGTTTGTCTTATTTAAGGCATAAACTTTGAATCTAT
260 AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGGGACAAACTTTGATTCTAT
* * * *
1032974 CAAAAACAGTGGAAAGAAAAGCTTTTCCCGTGACACTAAAGCTTCAATGTCATGAATCCTAATGA
325 CAAAAACAGTGGAAAGAAAAGCTTTT--CTTGACACCAAAGCTTCAATGTCATGTATTCTAATGA
** * * *
1033039 AGGGAATACGTTTTTGGCTTCCCAATCTTGAAACGATTGGAGACTATTACGAGAATCGATTCTTG
388 AGGGAATGTGTTTTTGGCTTCCCAATCTTGAAATGAATGGAGACTATTACGAGAATCGATGCTTG
* *
1033104 TCTTATTTAAAGCATGTACTTT
453 TCTTATTTAAAGTATGCACTTT
* * * * *
1033126 TATTTTAAGGAAAATATGGCAAAGAAAAGATTTCCATGTAAAAGAAAATTATCAATATCATTTAT
1 GATTTAAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTAT
* * * * *
1033191 CCTAATGAGGGGAATGTGTTTATAGTGCTTAATCACAAAATGAATTAAGAT-AATTGCTAGAGTC
66 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCAA-TACTAGAATC
* * * * ** *
1033255 CATGTTTGTCTCATTTGAGACATGAACTTAGACTTCACAGTAATTGGTGGGAAAAATGCATTTCT
130 CATGTTTGTCTCATTTGAGGCACGAACTTAAACTTTACAAAAATTGGTGGGAAAAA-GCCTTTCT
* * ** * * * *
1033320 TGCGAAAGCAAAGCATCAATATCACGTATCCTAATGAGAAGTCTATGTTCATGTTGCCTAATCTT
194 TGTGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT
**** *
1033385 GAAAAGAACATCGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGGGACAAACTTTGAATCTA
259 GAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGGGACAAACTTTGATTCTA
* * * *
1033450 TCGAAAACAGTGGAAAGAAAAGCTTTTCCTACGACACCAAAGCTTCAATGTCATGAATCCTAATG
324 TCAAAAACAGTGGAAAGAAAAGCTTTT-CT-TGACACCAAAGCTTCAATGTCATGTATTCTAATG
* *
1033515 AAGGGAATATGTTTTTGGCTTCCCAATCTTGAAACT-AATGGAGACTATTACGACAATCGATGCT
387 AAGGGAATGTGTTTTTGGCTTCCCAATCTTGAAA-TGAATGGAGACTATTACGAGAATCGATGCT
* *
1033579 CGTCTTATTTAAAGTATGTACTTT
451 TGTCTTATTTAAAGTATGCACTTT
* ** * * *
1033603 GATTTTAAGGAAAATATCGCAAA-AAAAGATTTCCGTGCGAAAGAAAATCATCAATATCTTTTAT
1 GATTTAAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTAT
* * * * *
1033667 CCTAATGAGGAGAGTGTGTTTATAGCGCCTAATCACAATATGAATAAAGATCATTACTAGATTCC
66 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCAATACTAGAATCC
* * * * *
1033732 ATGTTTGTCTTATTTGAAGCACGAACTTAGACTTTACAAAAATTGGTAGGAAAAAAGCCTTTCAT
131 ATGTTTGTCTCATTTGAGGCACGAACTTAAACTTTACAAAAATTGGT-GGGAAAAAGCCTTTCTT
* * * * * * * * *
1033797 GCGAAACCAAAGCATTAATAT-GATATATCCAAATGACAACACTATGTTAATGCTACCTAATCCT
195 GTGAAACCAAAGCATCAATATCG-TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT
* * * * * * *
1033861 CAAAAGAACGGGGATTAGTATGAGTTTTCATCTTTGTCGTATTTAAGAGACAAACTTTAATTCTA
259 GAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGGGACAAACTTTGATTCTA
* * * * *
1033926 TCAAAAACGGT-GAGAAGAAATA-CTTTTCTTGCAACAGCAAAGCATCAATGTCATGT-TCCCAT
324 TCAAAAACAGTGGA-AAGAAA-AGCTTTTCTTG--ACACCAAAGCTTCAATGTCATGTATTCTA-
* * * * * *
1033988 ATAAAGGGAACGTGTTTCTGGCTTCCCAATATTGAAATGAATGGAGACTA-T--GAGAATCAAAG
384 ATGAAGGGAATGTGTTTTTGGCTTCCCAATCTTGAAATGAATGGAGACTATTACGAGAATCGATG
* * * *
1034050 -TTCGTCTGATTTGAAGTATGTACTTC
449 CTT-GTCTTATTTAAAGTATGCACTTT
* ** *
1034076 GATTTAAAGGAAAATAAGGCAAAGAAATGATTTCCATATAAAAGAAAATTATCAATATCATTTAT
1 GATTTAAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTAT
* * * * * *
1034141 -CTCAATGAGGAGAATGTGTTTATCGCGCCTAA-CTACAAAATGAGTGAAGATCATTTCTAGAAT
66 CCT-AATGAGGAGAATGTGTTTATAGTGCCTAATC-ACAAAATGAATAAAGATCAATACTAGAAT
* * * * **
1034204 CCATGTTTGCCTCATTTGAGCCACGAACTTAGACTTTACAAAAACTGGTTTGAAAAATGCCTTTC
129 CCATGTTTGTCTCATTTGAGGCACGAACTTAAACTTTACAAAAATTGGTGGGAAAAA-GCCTTTC
* * * *
1034269 ATGTGAATCCAAACCATCAATAT-GATGTATCCTAATGAGACGACTATGTTTATGGTGCCTAATC
193 TTGTGAAACCAAAGCATCAATATCG-TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC
* *
1034333 CT--AAA-AA----GA--A-TA-G-GTATT-A-GTATTGTCATATTTAAGAGG-CAACCTTTGAT
257 CTGAAAAGAATGGGGATTAGTATGAGTATTCATGT-TTGTCTTATTTAAG-GGACAAACTTTGAT
* * *
1034383 TTTATCAAAAAC-GATGGAAAAAAAAAAGCTTTTCTTGCGACACCGAAGCTTCAATGTCATGT-T
320 TCTATCAAAAACAG-TGG--AAAGAAAAGCTTTTCTT--GACACCAAAGCTTCAATGTCATGTAT
* * * * * ** * * * *
1034446 TCCAAATGAAGGGAATGTG-TTTTCGCGTCCCAGTCCTGAAAAAAATAGAGATTGTTATGAGAAT
380 T-CTAATGAAGGGAATGTGTTTTTGGCTTCCCAATCTTGAAATGAATGGAGACTATTACGAGAAT
* * * * *
1034510 CAATGCTTGTCTTAATTAAAGGATACACTAT
444 CGATGCTTGTCTTATTTAAAGTATGCACTTT
* * * *
1034541 GATTTTAAA-GAAAATAGGGCAAATAAAAGATTTCCATGCGAAGGAAAATCATCAATATCATTTA
1 GA-TTTAAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTA
* * * * * * *
1034605 TCTTAATGAAGAGAATGTGTTTATGGAGCCTAATGACAAAATGAAGAAAGATCAAAACTAGAATC
65 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCAATACTAGAATC
* * * *
1034670 CATGTTTGTCCCTTTTGAGGCATGAACTTAAACTTTATAAAAATTGGTGGGAAAAAAGCCTTTCT
130 CATGTTTGTCTCATTTGAGGCACGAACTTAAACTTTACAAAAATTGGTGGG-AAAAAGCCTTTCT
* * **
1034735 TGTGAAACCAAAGCATCAATATTGTGTATCCTAATGAGAAGGCTACATTTATGGTGCCTAATCCT
194 TGTGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT
* * ** * *
1034800 GAAATGAAAGGCAATTAGTATGAGTATTCACGTTTGTCTTATTTAAGGGACAAACTTTGAATCTA
259 GAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGGGACAAACTTTGATTCTA
* * *
1034865 TCAAAAACAGTGGAAAGAAAAGCTTTACCTACGACACCAAAGCTTCAATGTCATGTATCCTAATG
324 TCAAAAACAGTGGAAAGAAAAGCTTT-TCT-TGACACCAAAGCTTCAATGTCATGTATTCTAATG
** * *
1034930 AAGAAAATGTGTTTTTGGCTTCCCAATCTTGAAATGAATCGAGACTATTACGAGAATCGATACTT
387 AAGGGAATGTGTTTTTGGCTTCCCAATCTTGAAATGAATGGAGACTATTACGAGAATCGATGCTT
1034995 GTCTTATTTAAAGTATGCACTTT
452 GTCTTATTTAAAGTATGCACTTT
*
1035018 GATTTAAAGGAAAATAAGGCAAAGAAAAGATTT-CATGCAAAGGAAAATCATCAATATCATTTAT
1 GATTTAAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTAT
** * * * * * *
1035082 TTTAAAGAGGGGAATGTGTTTTTGGAGCCTAATCACAAAATGAGTAAAGATCAATACTAGAATCC
66 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCAATACTAGAATCC
* **
1035147 -TAGTTTGTCTCTTTTGAGGCACGAACTTAAACTTTACAAAAGCTGGT-GGAAGAAAGCCTTTCT
131 AT-GTTTGTCTCATTTGAGGCACGAACTTAAACTTTACAAAAATTGGTGGGAA-AAAGCCTTTCT
* * * *
1035210 TGTGAAACC-AAGCATCAATATCGTGTATCCTAATGGGAAGATTGTGTTTATGGTGCCTAATCAT
194 TGTGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT
* * * * * * *
1035274 GTAAAGAACGGCGACTAGTATAAGTATTCATGTTTGTCTTCTTTAAGGGCCAAACTTTGATTCTA
259 GAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGGGACAAACTTTGATTCTA
* * * * *
1035339 TCAAAAATAGTGGAAAGAAAAGCTTTTCCT-ACAACCCCATAGCTTCAATGTCATGAATCCTAAT
324 TCAAAAACAGTGGAAAGAAAAGCTTTTCTTGAC-A--CCAAAGCTTCAATGTCATGTATTCTAAT
* * *
1035403 GAAGGGAATGTGTTTTTGGCCTCCCAATCTTGAAATGAGTGGAGACTATTATGAGAATCGATGCT
386 GAAGGGAATGTGTTTTTGGCTTCCCAATCTTGAAATGAATGGAGACTATTACGAGAATCGATGCT
1035468 TGTCTTATTTAAAGTATGCACTTT
451 TGTCTTATTTAAAGTATGCACTTT
*
1035492 GAATTAAAGGAAAATAAGGCAAAGAAAAGATTT-CATGCAAAAGAAAATCATCAATATCATTTAT
1 GATTTAAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTAT
* * * ** *
1035556 CCTAATGAGGAGAATGTGTTTATCGTGCCTAATCACAAAATAAATGAAGCCCATTACTAGAATCC
66 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCAATACTAGAATCC
* * * * * *
1035621 AAGTTTGTCTTATTTGAGGCACGAACATAGACTTTACCAAAATTGGTGGG-AAAAG----TCATG
131 ATGTTTGTCTCATTTGAGGCACGAACTTAAACTTTACAAAAATTGGTGGGAAAAAGCCTTTCTTG
* * * * * * * *
1035681 CGAAACCAAAGCATCAATAT-GATATATCCTAATGAGAACACTACGTTGATGCTGCTTAATCTTG
196 TGAAACCAAAGCATCAATATCG-TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTG
* * ** * *
1035745 AAAAGAATGGGGATTAGTATTAGTTTTCATCCTTGT-TGTACTTAAGAGACAAACTTTGATTCTA
260 AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCT-TATTTAAGGGACAAACTTTGATTCTA
** * * * *
1035809 TCAAAAATGGTGGGAAGAGAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGT-TTCCAAAT
324 TCAAAAACAGTGGAAAGAAAAGCTTTTCTT--GACACCAAAGCTTCAATGTCATGTATT-CTAAT
* ** ** * * * * *
1035873 GAAAGGAATAAGTTTTCAG-TTCCAAATCTTGAAAAGAATGGAGTCTATTATGAGAATCGATACT
386 GAAGGGAATGTGTTTTTGGCTTCCCAATCTTGAAATGAATGGAGACTATTACGAGAATCGATGCT
* *
1035937 TATCTTATTTATGAA--AAGCACTTT
451 TGTCTTATTTA--AAGTATGCACTTT
* * * * * * * *
1035961 CATTTTAAGGGAAAT-AGCCCAAAGAAAAGAATTGCATGGAAAAGAAAATCATTAATATCATTTA
1 GATTTAAAGGAAAATAAG-GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTA
* * * * *
1036025 T-CTCAATGAGGAGAATTTGTTTACAGCGCCTAATCACAAAATGAATAAAGATCAATAATAAAAT
65 TCCT-AATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCAATACTAGAAT
* * * *
1036089 -C-TATTTGTCTCATTTAAAGCATGAACTTAAACTTTACAAAAATTGGTGGGAAAAAAGCCTTTC
129 CCATGTTTGTCTCATTTGAGGCACGAACTTAAACTTTACAAAAATTGGTGGG-AAAAAGCCTTTC
* *
1036152 TTGTAAAACCAAAGCATCAATATCGTGTA-CACTAATGAGAAGACTACGTTTATGGTGCCTAATC
193 TTGTGAAACCAAAGCATCAATATCGTGTATC-CTAATGAGAAGACTATGTTTATGGTGCCTAATC
* * ** * *
1036216 CTGAAAACAACGACGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGGAACAAACTTTGATTA
257 CTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGGGACAAACTTTGATTC
* * * * * *
1036281 TTTTAAAAGCAATGGAAAGAAAAGCTTTTCCTG-CGAACCAAAGCTTCAATGTCATGTATCCTAA
322 TATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGAC--ACCAAAGCTTCAATGTCATGTATTCTAA
* * *
1036345 TGAAGGGAATGTGTTTTTGGCTTGCCAATCTTGAAATGAATAGAGACTATTACGAGAATCGATGG
385 TGAAGGGAATGTGTTTTTGGCTTCCCAATCTTGAAATGAATGGAGACTATTACGAGAATCGATGC
* *
1036410 TTGTCTTATTTAAAGTGTACACTTT
450 TTGTCTTATTTAAAGTATGCACTTT
* * * * * * * *
1036435 GATTTAAAGGAAAACAAGGCAAAAAAAAGATTTTCATG-TAATGAAAAATCGTCAATAACATATA
1 GATTTAAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAG-AAAATCATCAATATCATTTA
* * * * * *
1036499 TCTTAATGAGGGGAATGTATTTATGGAGCCTAATCACAATATGAATAAAGATCAATACTAGAATC
65 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCAATACTAGAATC
* * * * *
1036564 CAAGTTTGTCTCTTTTGAGGAATGAACTTAAACTTTACAAAAATTGGTGGGAAAAAAGCATTTCT
130 CATGTTTGTCTCATTTGAGGCACGAACTTAAACTTTACAAAAATTGGTGGG-AAAAAGCCTTTCT
* * * * * *
1036629 TATGAAACCCAAGCATTAATATTGTGTATCCTAATGAAAAGACTATGTTTATGGTGCCTAAACCT
194 TGTGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT
* * ** * * *
1036694 AAAAAGAACGATGATTAGTATGAGCATTCTTGTTTGTCTTATTTAAGGGTCAAACTTTGATGT-T
259 GAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGGGACAAACTTTGAT-TCT
* * * * *
1036758 ATCAAAAACAATGGAAAGAAAGGCTTTTCTTGCGACACGAAAGCTTCAATGTCAAGTATCCTAAT
323 ATCAAAAACAGTGGAAAGAAAAGCTTTTCTT--GACACCAAAGCTTCAATGTCATGTATTCTAAT
* * *
1036823 GAAGGGATTGCGTTTTGGGCTTCCCAATCTTGAAATGAATGGAGACTATTACGAGAATCGATGCT
386 GAAGGGAATGTGTTTTTGGCTTCCCAATCTTGAAATGAATGGAGACTATTACGAGAATCGATGCT
1036888 TGTCTTATTTAAAGTATGCACTTT
451 TGTCTTATTTAAAGTATGCACTTT
* * * *
1036912 GATTCAAAGGAAAATAAGGCAAAGAAAAGATTTCCGTACAAAAGAAAATCATCAATATCTTTTAT
1 GATTTAAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTAT
* * * *
1036977 CCTAATGAGGAGAATGTGTTTATCGTGCCAAATCACAAAATGAATAAAGATCATTACTAGAATCT
66 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCAATACTAGAATCC
* * * * * * ** *
1037042 ATGTTTGTCTTATTTGAGCCACGAATTTAGACTTTACAAAAACTAGTTTGAAAAATGCTTTTCTT
131 ATGTTTGTCTCATTTGAGGCACGAACTTAAACTTTACAAAAATTGGTGGGAAAAA-GCCTTTCTT
** * * *
1037107 ACGAAAACAAAGCGTCAATAT-GATGTATCCTAATGAGAAGACCATGTTTATGGTGCCTAATCCT
195 GTGAAACCAAAGCATCAATATCG-TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT
* * * *
1037171 AAAAAGAGTGGGTATTAGTATGAGTATTCATGTTTGTCGTATTT-AGGAGACAAACTTTGATTCT
259 GAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGG-GACAAACTTTGATTCT
* * *
1037235 -TCGAAAACGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCTTCAATGTCATGT-TTCGAAA
323 ATCAAAAACAGTGGAAAGAAAAGCTTTTCTTG--ACACCAAAGCTTCAATGTCATGTATTC-TAA
* * * * * * * ** *
1037298 TGAAGGGAATGTG-TTTTCGCGTCTCAATCTTGAAAAGAATAGAGTCTGTTATAAGAATCAATGC
385 TGAAGGGAATGTGTTTTTGGCTTCCCAATCTTGAAATGAATGGAGACTATTACGAGAATCGATGC
* *
1037362 TTGTCTTATTTAAAGGATACACTTT
450 TTGTCTTATTTAAAGTATGCACTTT
* * *
1037387 GATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATTATTTAT
1 GATTTAAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTAT
* * * *
1037452 CTTAATGAGGAGAAAGTGTTTATGGAGCCTAATCACAAAATGAATAAAGATCAATACTAGAA-CC
66 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCAATACTAGAATCC
* ** * * * * * *
1037516 AAAGTTTGTCTTTTTTAAGGCCCAAACTTAAACTTTACAAAAATTAGTGGGAAGAAATCTTTTCT
131 -ATGTTTGTCTCATTTGAGGCACGAACTTAAACTTTACAAAAATTGGTGGGAA-AAAGCCTTTCT
* *
1037581 TGTGAAACTAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGAGCCTAATCCT
194 TGTGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT
* * * * *
1037646 GAAAAGAACGGCGATTAGTATGAGTAATAATGTTTGTCTTATTTGAGGGACAAACTTTGATTCTA
259 GAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGGGACAAACTTTGATTCTA
*
1037711 TCAAAAACAGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCTTCAATGTCATGTATTCTGATG
324 TCAAAAACAGTGGAAAGAAAAGCTTTTCTT--GACACCAAAGCTTCAATGTCATGTATTCTAATG
*** * * *
1037776 AAAAAAATGTGTTTTTCGCTTCCTAATCTTGAAATAAATGGAGACTATTACGAGAATCGATGCTT
387 AAGGGAATGTGTTTTTGGCTTCCCAATCTTGAAATGAATGGAGACTATTACGAGAATCGATGCTT
1037841 GTCTTATTTAAAGTATGCACTTT
452 GTCTTATTTAAAGTATGCACTTT
*
1037864 GATTTAAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTAT
1 GATTTAAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTAT
* * * *
1037929 CCTAATGAGGAGAATGTGTTTATCGTGCCTAATCACAAAATGAATGAGGATCATTACTAGAATCC
66 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCAATACTAGAATCC
* * * *
1037994 AAGTTTGTCGT-ATTTGAGGCACGAACTTAGAGTTTACAAAAGTTGGTGGGAAAAAAGCCTTTCT
131 ATGTTTGTC-TCATTTGAGGCACGAACTTAAACTTTACAAAAATTGGTGGG-AAAAAGCCTTTCT
* * * * * * * * * *
1038058 TGCGAAACTAAAGCATCAATGT-GATGTACCCTAATGAGTACACTACGTTGATGCTGCTTAATCC
194 TGTGAAACCAAAGCATCAATATCG-TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCC
* * * * **
1038122 AGAAAAGAATGGGGATTAGTATGAGTTTTCATCTTTGTCATATTTAAAAGACAAACTTTGATTCT
258 TGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGGGACAAACTTTGATTCT
* * * * *
1038187 GTCAAAAA-TGATGGGAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGT-TTCCAA
323 ATCAAAAACAG-TGGAAAGAAAAGCTTTTCTT--GACACCAAAGCTTCAATGTCATGTATTCTAA
* *
1038250 TTGAAGGGAATGTG-TTTTCGCTTCCCAATCTTGAAAAGAATGGAG
385 -TGAAGGGAATGTGTTTTTGGCTTCCCAATCTTGAAATGAATGGAG
1038295 TCTGTTTTGA
Statistics
Matches: 8078, Mismatches: 1183, Indels: 394
0.84 0.12 0.04
Matches are distributed among these distances:
460 2 0.00
461 35 0.00
462 31 0.00
463 48 0.01
464 5 0.00
465 232 0.03
466 15 0.00
467 4 0.00
468 44 0.01
469 97 0.01
470 238 0.03
471 7 0.00
472 10 0.00
473 108 0.01
474 1017 0.13
475 1192 0.15
476 2024 0.25
477 2222 0.28
478 330 0.04
479 297 0.04
480 72 0.01
481 48 0.01
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (474 bp):
GATTTAAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTAT
CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCAATACTAGAATCC
ATGTTTGTCTCATTTGAGGCACGAACTTAAACTTTACAAAAATTGGTGGGAAAAAGCCTTTCTTG
TGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGA
AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGGGACAAACTTTGATTCTATC
AAAAACAGTGGAAAGAAAAGCTTTTCTTGACACCAAAGCTTCAATGTCATGTATTCTAATGAAGG
GAATGTGTTTTTGGCTTCCCAATCTTGAAATGAATGGAGACTATTACGAGAATCGATGCTTGTCT
TATTTAAAGTATGCACTTT
Found at i:1046866 original size:13 final size:13
Alignment explanation
Indices: 1046848--1046878 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
1046838 ACATTTCTTC
1046848 ATGTATCGATACA
1 ATGTATCGATACA
1046861 ATGTATCGATACA
1 ATGTATCGATACA
*
1046874 TTGTA
1 ATGTA
1046879 CCATGTATCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.35
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1046866 original size:33 final size:33
Alignment explanation
Indices: 1046828--1047041 Score: 121
Period size: 32 Copynumber: 6.0 Consensus size: 33
1046818 GTTACAAGCT
1046828 ATGTATCGATACATT-T-CTTCATGTATCGATACA
1 ATGTATCGATACATTGTAC--CATGTATCGATACA
1046861 ATGTATCGATACATTGTACCATGTATCGATACAA
1 ATGTATCGATACATTGTACCATGTATCGATAC-A
* * **
1046895 ATAGTGATAGGGTAGCTACTACTAGTTTCATGTATCGATACAA
1 AT-GT-AT--CG-A--TAC-A-TTGTACCATGTATCGATAC-A
* *
1046938 TTTGGCCATGTATCGATACAATG-AACATGTATCGATACA
1 -------ATGTATCGATACATTGTACCATGTATCGATACA
* *
1046977 ATGTATCGATACAATG-AACATGTATCGATACA
1 ATGTATCGATACATTGTACCATGTATCGATACA
** *
1047009 ATGTATCGATACAAAGTAGCATGTATCGATACA
1 ATGTATCGATACATTGTACCATGTATCGATACA
1047042 TCTAGGTGTG
Statistics
Matches: 150, Mismatches: 11, Indels: 40
0.75 0.05 0.20
Matches are distributed among these distances:
32 47 0.31
33 43 0.29
34 4 0.03
35 3 0.02
36 2 0.01
38 1 0.01
39 2 0.01
40 13 0.09
41 4 0.03
42 2 0.01
43 21 0.14
45 1 0.01
46 1 0.01
48 2 0.01
49 2 0.01
50 2 0.01
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.32
Consensus pattern (33 bp):
ATGTATCGATACATTGTACCATGTATCGATACA
Found at i:1046968 original size:19 final size:19
Alignment explanation
Indices: 1046923--1047011 Score: 100
Period size: 19 Copynumber: 4.9 Consensus size: 19
1046913 CTACTAGTTT
**
1046923 CATGTATCGATACAATTTGGC
1 CATGTATCGATACAA--TGAA
1046944 CATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
1046963 CATGTATCGATAC-----A
1 CATGTATCGATACAATGAA
1046977 -ATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
1046995 CATGTATCGATACAATG
1 CATGTATCGATACAATG
1047012 TATCGATACA
Statistics
Matches: 60, Mismatches: 2, Indels: 14
0.79 0.03 0.18
Matches are distributed among these distances:
13 12 0.20
14 1 0.02
18 1 0.02
19 31 0.52
21 15 0.25
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:1046982 original size:13 final size:13
Alignment explanation
Indices: 1046964--1047022 Score: 69
Period size: 13 Copynumber: 5.1 Consensus size: 13
1046954 TACAATGAAC
1046964 ATGTATCGATACA
1 ATGTATCGATACA
1046977 ATGTATCGATAC-
1 ATGTATCGATACA
1046989 A---AT-GA-AC-
1 ATGTATCGATACA
1046996 ATGTATCGATACA
1 ATGTATCGATACA
1047009 ATGTATCGATACA
1 ATGTATCGATACA
1047022 A
1 A
1047023 AGTAGCATGT
Statistics
Matches: 40, Mismatches: 0, Indels: 12
0.77 0.00 0.23
Matches are distributed among these distances:
7 3 0.08
8 2 0.05
9 2 0.05
10 2 0.05
11 2 0.05
12 3 0.08
13 26 0.65
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.29
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1046986 original size:32 final size:32
Alignment explanation
Indices: 1046945--1047041 Score: 167
Period size: 32 Copynumber: 3.0 Consensus size: 32
1046935 CAATTTGGCC
1046945 ATGTATCGATACAATGAACATGTATCGATACA
1 ATGTATCGATACAATGAACATGTATCGATACA
1046977 ATGTATCGATACAATGAACATGTATCGATACA
1 ATGTATCGATACAATGAACATGTATCGATACA
* *
1047009 ATGTATCGATACAAAGTAGCATGTATCGATACA
1 ATGTATCGATACAATG-AACATGTATCGATACA
1047042 TCTAGGTGTG
Statistics
Matches: 62, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
32 47 0.76
33 15 0.24
ACGTcount: A:0.40, C:0.15, G:0.16, T:0.28
Consensus pattern (32 bp):
ATGTATCGATACAATGAACATGTATCGATACA
Found at i:1050658 original size:476 final size:474
Alignment explanation
Indices: 1047352--1051824 Score: 4415
Period size: 476 Copynumber: 9.5 Consensus size: 474
1047342 CAACAGAAGT
* * * * *
1047352 GAATGTGTTTTCACTTCCCAATCTTGAACAA-AATGGGGTCTACTATGAGAATCGATGCTTATCT
1 GAATGTGTTTTTACTTCCCAATCTTGAA-AAGAATGGAGACTATTATGAGAATCGATGCTTGTCT
* * * *
1047416 TATTTAAGGGATGTACTTTGATTTTAAA-GAAAATAGGGCAAAGAAAATATTTTCATGGAAAA-A
65 TATTTAAGGGATGCACTTTGA-TTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
* * * * * **
1047479 AAACCATCAATATCTTTTATCTTAATGAGAAGATTGTATTTATAGTGCCTAATCATGAAATGAAT
129 AAATCATCAATATCATTTATCTTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
* * *
1047544 GAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGTACAAACTTAAACTTTACAAAAATTC
194 GAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAAACTTTACAAAAATTG
*
1047609 TTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCAAGTATCCTAATCAGAAGACTAT
259 TTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATC--GTATCCTAATGAGAAGACTAT
* * *
1047674 GTTTATGGTGCATAAT-CTAGAAAAGAATGGGGATTAGTATAAGTATTCATGTTTATCTTATTTA
322 GTTTATGGTGCCTAATCCT-GAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTA
* ** * * * * *
1047738 AGGGACAAACTTTGATTCTAT-CAAAAATAGTGGAGAGAAAAAGCTTATCCTACAACACCAAAGC
386 AGAGACAAACTTTGATTCTATCCAAAACGA-TGGAAAG-AAAAGCTTTTCTTGCGACACCAAAGC
*
1047802 TTCAAAGTCATGTAT-TCTAATG-AAG
449 TTCAATGTCATGTATCT-TAATGAAAG
* * * *
1047827 AGAATGTGTTTTTAGCTTCCCTATCTTGAAATGAATGGAGACTATTATGAGAATCCATGCTTATC
1 -GAATGTGTTTTTA-CTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTGTC
* * ** * * * *
1047892 TTATTTAAAGTATGTGCTTCGATTTAAAGGAAAATATGACAAAGAAAAGATTTCCATGCAAAATA
64 TTATTTAAGGGATGCACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
*
1047957 AAATCATCAATATCATTTATCTTAATGGGGAGAATGTGTTTATCA-TGCCTAATCACAAAATGAA
129 AAATCATCAATATCATTTATCTTAATGAGGAGAATGTGTTTAT-AGTGCCTAATCACAAAATGAA
* * * * * * * *
1048021 TGAAGTTCATTTCTACAATCCATGTTTGTCCCATCTGAGCCACGAACTTAGACTTTACAAAAACT
193 TGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAAACTTTACAAAAA-T
* * * * *
1048086 AGTT-TGAA-AAATGCCTTTCTTGTGAAACCAAAGCATCAATA-CGATGTATACGAATGAAAAGA
257 TGTTGGGAAGAAA-GCCTTTCTTGTGAAACCAAAGCATCAATATC---GTATCCTAATGAGAAGA
* * * * * * *
1048148 CTATGTTTATGGTCCCTAACCCTCAAAAGAATGGGTATTAGTATGAGTATTTATGTTTGCCATAT
318 CTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTAT
* * * * *
1048213 TTAAGAGACAAACTTTGATTTTAT-CAAAATCGGTGGAAGGGAAAGCTTTTCTTGCGACACGAAA
383 TTAAGAGACAAACTTTGATTCTATCCAAAA-CGATGGAAAGAAAAGCTTTTCTTGCGACACCAAA
* * * * *
1048277 GCTTTAATGTCATGTTTCTAAAAGAAGG
447 GCTTCAATGTCATGTATCTTAATGAAAG
*** * ** * * *
1048305 GAATGTGTTTGCGCTTCCTAATCTTGAAAAGAATGGACTCTGTTATGAGAATCAATGTTTGTC--
1 GAATGTGTTTTTACTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTGTCTT
* * * *
1048368 --TT----GATGTACTTTGATTTTAAGGAAATTAGGGCAAAGAAAAGATTTCCATGTAAAAGAAA
66 ATTTAAGGGATGCACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
* * * * *
1048427 ATCATCAATATCATCTATCTTAATGAGGAGAATGTGTTTAT-GAAGCCTAATCAGAAAGTGAATA
131 ATCATCAATATCATTTATCTTAATGAGGAGAATGTGTTTATAG-TGCCTAATCACAAAATGAATG
* * * * * *
1048491 AAGATCAATACTAGAACCCAAGTTTGTC-GATTTTGAGGCATGGACTTGAACTTTACAAAAATTG
195 AAGATCAATACTAGAATCCATGTTTGTCTCA-TTTGAGGCACGAACTTAAACTTTACAAAAATTG
* * ** *
1048555 GTGGGAAGAAAGACTTT-TT-T---ATGAAA-C-TCAATATCGTGGATCCTAATGAGGAGACTAT
259 TTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGT--ATCCTAATGAGAAGACTAT
* * * ** * * *
1048613 GTTT-TAAGTGCGTAAT-CTGAAAAAGAATAGGGATTTTTATGAGTATTCATGCTTATCCTATTT
322 GTTTAT-GGTGCCTAATCCTG-AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTT
* * *
1048676 AAGAGACAAACTTTGATTTTA-CC-AAAC-AGTGGAAAGAAAAGCTTTTCTTGCGGCCCCAAAGC
385 AAGAGACAAACTTTGATTCTATCCAAAACGA-TGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC
* * *
1048738 ATCAATATCATGTAT-TCTAATGAAGG
449 TTCAATGTCATGTATCT-TAATGAAAG
** * * * * * *
1048764 GAATGT-CCTTTAGCTTACCAATCTTGAAAAGAATGGAGACTGTTACGAGAGTTGATGGTTGTCT
1 GAATGTGTTTTTA-CTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTGTCT
** ** * * * *
1048828 TATTTAAGGTTTAAACTTTGGTTTAAAGGAAAATGGGGCAAAGAAAAGCTTTCCATACAAAAGAA
65 TATTTAAGGGATGCACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAA
* * * * *
1048893 CATCATCAATATCAATTAT-TCTAAAGAGGGGAATGTGTTTATAATGCCTAATCACAAAATGAAT
130 AATCATCAATATCATTTATCT-TAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
* * * * *
1048957 GAAGATCATTACTTGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACGAAAACTA
194 GAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAAACTTTAC-AAAAATT
* *
1049022 G-TGGGAA-AAATGCCTTTCTTGTGAAA-CAAAGCATTAATATGATGTATCCTAATG-GCAAGAC
258 GTTGGGAAGAAA-GCCTTTCTTGTGAAACCAAAGCATCAATAT--CGTATCCTAATGAG-AAGAC
* * * * * *
1049083 TACGTTTATGTTGCCTAATCTTGAAAAAAATGGGGATTAGTATGAGTTTTCATGTTTGT-TGCAT
319 TATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCT-TAT
* * * * * ** *
1049147 ATAAAAGACAAACTTTGACTCGATCAAAAATAATGGAAAGAAAATCTTTTCTTGCGACACCAAAG
383 TTAAGAGACAAACTTTGATTCTATCCAAAACGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAG
* * * **
1049212 CATCAATGTCTTGTGTCCAAATG-AAG
448 CTTCAATGTCATGTATCTTAATGAAAG
* * * * * * * *
1049238 GAAAT-TATTTTTGCTTCCCAATATTGAAAAGAATAGAGTCTGTTATGAGAATCGATACTTGTTT
1 G-AATGTGTTTTTACTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTGTCT
* * *
1049302 TATTTAAGGGATGCACTTAGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAA
65 TATTTAAGGGATGCACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAA
* * * * * * * *
1049367 AATCTTCAATATCATTTATCCTATTGAGGAGAACGTGTTTATGGAGCTTAATCACAAAATGAATA
130 AATCATCAATATCATTTATCTTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
* * *
1049432 AAGATCAATACTAAAATCCATATTTGTCTCATTTGAGGCACAAACTTAAACTTTACAAAAATTGG
195 AAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAAACTTTACAAAAATT-G
*
1049497 TT-GGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGCGTATCCTAATGGGAAGACTAT
259 TTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATAT--CGTATCCTAATGAGAAGACTAT
* ** * * * *
1049561 GCTTTATGGTGCCTAATCC-GAAAAAGAATAGGGATTCTTGTGACTATTCATGTTTATCCTATTT
322 G-TTTATGGTGCCTAATCCTG-AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTT
* * * *
1049625 AAGAGATAAACTTTTACTT-TATCAAAAACGGCAT--AAAGAAAAGCTTTTCTTGCGACCCCAAA
385 AAGAGACAAACTTTGA-TTCTATCCAAAAC-G-ATGGAAAGAAAAGCTTTTCTTGCGACACCAAA
* *
1049687 GCATCAATGTCATGTAT-TCTAATGAAGG
447 GCTTCAATGTCATGTATCT-TAATGAAAG
* * *
1049715 GAA-GTG-TTTTAGCTTCCCAATCTTGAAGAGAATGAAGACT-TT-T-ACAAT-G--G-TTGTCT
1 GAATGTGTTTTTA-CTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTGTCT
** * * * * * *
1049771 TATTTAAGGTTTGAACTTTGGTTTAAAGGAAAATGGGGCAAAGAAAATATTTTCATGCGAAAGAA
65 TATTTAAGGGATGCACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAA
* * * **
1049836 AATCATTAATATCATTTATCCTAATGAGGATAATGTGTTTATCA-TGCCTAATCATGAAATGAAT
130 AATCATCAATATCATTTATCTTAATGAGGAGAATGTGTTTAT-AGTGCCTAATCACAAAATGAAT
* * * * * * *
1049900 GAATATCATTACTAGAATCCAAGTTTTTCTTATTTGAGGCATGAAC-T----TTTACAAAACTTG
194 GAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAAACTTTACAAAAATTG
* * * * *
1049960 -TGGGAAAAAAGCCTTTCATGCGAAAGCAAAGCATCAACATGAT-GTATCCTAATGAGAACACTA
259 TTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATC-A-AT-ATCGTATCCTAATGAGAAGACTA
* * * * * * * * * *
1050023 CGTTGATGCTGCTTAATCTTGAAAAGAACGGGGATTAGTATGAGTTTTCATCTTTAT-TGTATGT
321 TGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCT-TATTT
* * * * *
1050087 AAGAGACAAACTTTGATTCTATCAAAAATGGTGGGAAGAAAAGCTTTTCTTACGACACCAAAGCA
385 AAGAGACAAACTTTGATTCTATCCAAAACGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC-
* ** *
1050152 TT-AATGTCATGTTTCCAAATGAAGG
449 TTCAATGTCATGTATCTTAATGAAAG
* * * * * *
1050177 GAATGTGCTTTCACTTCCCCATCTTGAAAAGAATGGAGTCTATTATGAAAATCGATGCTTATCTT
1 GAATGTGTTTTTACTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTGTCTT
* * ** * * * * *
1050242 ATTTAAGGGAAGCACTTTCATTTTGAGGAAAATAGCGCAAAGAAAAGAATTGCAGGGAAAAGAAA
66 ATTTAAGGGATGCACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
* * * * *
1050307 ATCATCATTATCATTTATCTTAATGTGGAGAATGTGTTTATAGTGCCAAATCAAAAAATGAACGA
131 ATCATCAATATCATTTATCTTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
* * * *
1050372 AGATCAATACTAGAATCCATGTTTGTCTCGTTTGAGGCACGAACATAAACCTTACAAAAATTTTT
196 AGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAAACTTTACAAAAATTGTT
* *
1050437 GGGAGGAAAGCCTTTCTTGTGACACCAAAGCATCAATATCGTATACCATAATGAGAAGACTATGT
261 GGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTAT-CC-TAATGAGAAGACTATGT
* * *
1050502 TTATGGTGCCTAAACCTGAAAAGAATGGCGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGG
324 TTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGA
* * * *
1050567 GACAAAATTTGATTCTATCCAAAACGATGGAAAGAAAAGCTTTTCCTGCGACATCAAAGTTTCAA
389 GACAAACTTTGATTCTATCCAAAACGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCTTCAA
*
1050632 TGTCATGTATCTTAATAAAAG
454 TGTCATGTATCTTAATGAAAG
* * * * * * *
1050653 GAATGTGTTTTTGGCTTCCTAAACTTGAAATGAATGGAGACTATTACGAGAATCAATGGTTG-CT
1 GAATGTGTTTTT-ACTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTGTC-
*** * * * * *
1050717 TTATTTAAATTATGCATTTTAATATAAAGGAAAATAAGGCGAAGAAAAGATTTCCATGCAAAAGA
64 TTATTTAAGGGATGCACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
*
1050782 AAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
129 AAATCATCAATATCATTTATCTTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
* * * * *
1050847 GAAGATCATTACTAGAATCCTTGTTTGTCTTATTTGAGGCATGAACTTAGACTTTACAAAAATTG
194 GAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAAACTTTACAAAAATTG
* * * * * ** *
1050912 ATAGGAA-AATAGCCTTTCATGCGAAATCAAAGCATCAGTATGAT-GTATCCTAAAAAGAACACT
259 TTGGGAAGAA-AGCCTTTCTTGTGAAACCAAAGCATCA--AT-ATCGTATCCTAATGAGAAGACT
* * * * * * *
1050975 ACGTTGATGCTGCCTAGTCCTGAAAAGAATGGGGATTAGTATGAGTTTTCATCTTTGTCGTATTT
320 ATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTT
* * * * * * *
1051040 AAAAGATAAACTTTGATTCTAT-TAAGAACGGTGGGAAGAAAAGCTTTTTTTACGACACCAAAGC
385 AAGAGACAAACTTTGATTCTATCCAA-AACGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC
* * ** * *
1051104 ATCAATGTCATGTTTCCGACTGAAGG
449 TTCAATGTCATGTATCTTAATGAAAG
* * *
1051130 GAATGTGTTTTTGCTTCCCAATCTTGAAAAGAATGGAGTCTATTATGAGAATCGATGCTTGTTTT
1 GAATGTGTTTTTACTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTGTCTT
* * * * *
1051195 ATTTAAAGGATGCACTTTGAGTTT-AAGGAAAATAGGGCAAAAAAAAGATTTTCATGGAAAAAAA
66 ATTTAAGGGATGCACTTTGA-TTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAA
* * **
1051259 AATCATCAATATCATTTATCTTAATGAGAAGAATGTATTTATAGTGCCTAATCATGAAATGAATG
130 AATCATCAATATCATTTATCTTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
* * *
1051324 AAGATCAATACTTGAATCCATGTTTGTCTCATTTGAGGTACGAACTTAAACTTTACAAAAATTCT
195 AAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAAACTTTACAAAAATTGT
*
1051389 TGGGAAGAAAGCCTTTCTTGTGAAACTAAAGCATCAATATCGAGTATCCTAATGAGAAGACTATG
260 TGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATC--GTATCCTAATGAGAAGACTATG
*
1051454 TTTATGGTGACTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAG
323 TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAG
* ** * * * * *
1051519 GGACAAACTTTGATTCTAT-CAAAAATAGTGGACAGAAAAGCTTATCCTACAACACCAAAGCTTC
388 AGACAAACTTTGATTCTATCCAAAACGA-TGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCTTC
*
1051583 AAGGTCATGTAT-TCTAATG-AAG
452 AATGTCATGTATCT-TAATGAAAG
* * * **
1051605 AGAATTTGTTTTTAGCTTCACAATCTTGAAATA-AATGGAGACTTTTACAAGAATCGATGCTTGT
1 -GAATGTGTTTTTA-CTTCCCAATCTTGAAA-AGAATGGAGACTATTATGAGAATCGATGCTTGT
* * * *
1051669 CTTATTTGAA-GTATGTACTTCGATTTAAAGGAAAATATGGCAAAGAAAAGATTTCCATGCAAAA
63 CTTATTT-AAGGGATGCACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAA
* * * * *
1051733 TAAAATCATCAATATCATTTATCCTAATGGGGAGAATGTGTTTATCGTGCCTAATCACAAAATTA
127 GAAAATCATCAATATCATTTATCTTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
* * *
1051798 ATGAAGTTCATTTCTAGAATCCATGTT
192 ATGAAGATCAATACTAGAATCCATGTT
1051825 CATTTCTAGT
Statistics
Matches: 3236, Mismatches: 634, Indels: 253
0.78 0.15 0.06
Matches are distributed among these distances:
458 2 0.00
459 96 0.03
460 7 0.00
461 90 0.03
462 120 0.04
463 84 0.03
464 18 0.01
465 3 0.00
466 11 0.00
467 160 0.05
468 168 0.05
469 154 0.05
470 146 0.05
471 4 0.00
472 6 0.00
473 94 0.03
474 233 0.07
475 119 0.04
476 767 0.24
477 692 0.21
478 248 0.08
479 12 0.00
480 2 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (474 bp):
GAATGTGTTTTTACTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTGTCTT
ATTTAAGGGATGCACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
ATCATCAATATCATTTATCTTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
AGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAAACTTTACAAAAATTGTT
GGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTATCCTAATGAGAAGACTATGTTT
ATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGA
CAAACTTTGATTCTATCCAAAACGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCTTCAATG
TCATGTATCTTAATGAAAG
Found at i:1051156 original size:953 final size:947
Alignment explanation
Indices: 1047329--1051824 Score: 5093
Period size: 953 Copynumber: 4.8 Consensus size: 947
1047319 GATCCTAACA
* * *
1047329 AATGTCATGTTTCCAACA-GAAGTGAATGTGTTTTCACTTCCCAATCTTGAACAA-AATGGGGTC
1 AATGTCATGTTTCCAA-ATGAAGGGAATGTGTTTTCGCTTCCCAATCTTGAA-AAGAATGGAGTC
* * *
1047392 TACTATGAGAATCGATGCTTATCTTATTTAAGGGATGTACTTTGATTTTAAAGAAAATAGGGCAA
64 TATTATGAGAATCGATGCTTATCTTATTTAAGGGATGCACTTTGATTTTAAGGAAAATAGGGCAA
* * * * * * *
1047457 AGAAAATATTTTCATGGAAAA-AAAACCATCAATATCTTTTATCTTAATGAGAAGATTGTATTTA
129 AGAAAAGATTTCCATGGAAAAGAAAATCATCAATATCATTTATCTTAATGAGGAGAATGTGTTTA
* *
1047521 TAGTGCCTAATCATGAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGTAC
194 TAGTGCCTAATCATAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCAC
*
1047586 AAACTTAAACTTTACAAAAATTCTTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATC
259 GAACTTAAACTTTACAAAAATTCTTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATC
* * * *
1047651 AAGTATCCTAATCAGAAGACTATGTTTATGGTGCAT-AATCTAGAAAAGAATGGGGATTAGTATA
324 --GTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAACCT-GAAAAGAAT-GGGATTAGTATG
** *
1047715 AGTATTCATGTTTATCTTATTTAAGGGACAAACTTTGATTCTAT-CAAAAATAGTGGAGAGAAAA
385 AGTATTCATGTTTATCTTATTTAAGGGACAAACTTTGATTCTATCCAAAACGAGTGGAAAG-AAA
* * * * *
1047779 AGCTTATCCTACAACACCAAAGCTTCAAAGTCATGTATTCTAATGAAGAGAATGTGTTTTTAGCT
449 AGCTTTTCCTGCGACACCAAAGCTTCAATGTCATGTATTCTAATAAAG-GAATGTGTTTTTAGCT
* * * * * * **
1047844 TCCCTATCTTGAAATGAATGGAGACTATTATGAGAATCCATGCTTATCTTATTTAAAGTATGTGC
513 T-CCAATCTTGAAATGAATGGAGACTATTACGAGAATCAATGGTTGTCTTATTTAAATTATGAAC
* * * *
1047909 TTCGATTTAAAGGAAAATATGACAAAGAAAAGATTTCCATGCAAAATAAAATCATCAATATCATT
577 TTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATT
* * * * *
1047974 TATCTTAATGGGGAGAATGTGTTTATCATGCCTAATCACAAAATGAATGAAGTTCATTTCTACAA
642 TATCCTAATGAGGAGAATGTGTTTAT-ATGCCTAATCACAAAATGAATGAAGATCATTACTAGAA
* * * * * * *
1048039 TCCATGTTTGTCCCATCTGAGCCACGAACTTAGACTTTACAAAAACTAGTTTGAAAAAT-GCCTT
706 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAA-TTGATGGGAAAATAGCCTT
* * * * * * * * * * *
1048103 TCTTGTGAAACCAAAGCATCAATACGATGTATACGAATGAA-AAGACTATGTTTATGGTCCCTAA
770 TCATGCGAAA-CAAAGCATCAATATGATGTATCCTAA-AAAGAACACTACGTTGATGCTGCCTAA
* * * * * * *
1048167 CCCTCAAAAGAATGGGTATTAGTATGAGTATTT-ATGTTTGCCATATTTAAGAGACAAACTTTGA
833 TCCTGAAAAGAATGGGGATTAGTATGAGT-TTTCATCTTTGTCGTATTTAAAAGACAAACTTTGA
* * * * * * *
1048231 TTTTATCAAAATCGGT-GGAAGGGAAAGCTTTTCTTGCGACACGAAAGCTTT
897 TTCTATCAAAAACGGTGGGAA-GAAAAGCTTTTCTTACGACACCAAAGCATC
* * * * * *
1048282 AATGTCATGTTTCTAAAAGAAGGGAATGTGTTTGCGCTTCCTAATCTTGAAAAGAATGGACTCTG
1 AATGTCATGTTTCCAAATGAAGGGAATGTGTTTTCGCTTCCCAATCTTGAAAAGAATGGAGTCTA
* * * * *
1048347 TTATGAGAATCAATG-TT-T-GT-CTT----GATGTACTTTGATTTTAAGGAAATTAGGGCAAAG
66 TTATGAGAATCGATGCTTATCTTATTTAAGGGATGCACTTTGATTTTAAGGAAAATAGGGCAAAG
* *
1048404 AAAAGATTTCCATGTAAAAGAAAATCATCAATATCATCTATCTTAATGAGGAGAATGTGTTTAT-
131 AAAAGATTTCCATGGAAAAGAAAATCATCAATATCATTTATCTTAATGAGGAGAATGTGTTTATA
* * * * * * * *
1048468 GAAGCCTAATCAGAAAGTGAATAAAGATCAATACTAGAACCCAAGTTTGTC-GATTTTGAGGCAT
196 G-TGCCTAATCATAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCA-TTTGAGGCAC
* * ** * **
1048532 GGACTTGAACTTTACAAAAATTGGTGGGAAGAAAGACTTT-TT-T---ATGAAA-C-TCAATATC
259 GAACTTAAACTTTACAAAAATTCTTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATC
* * * * **
1048590 GTGGATCCTAATGAGGAGACTATGTTT-TAAGTGCGT-AATCTGAAAAAGAATAGGGATTTTTAT
324 GT--ATCCTAATGAGAAGACTATGTTTAT-GGTGCCTAAACCTG-AAAAGAAT-GGGATTAGTAT
* * * *
1048653 GAGTATTCATGCTTATCCTATTTAAGAGACAAACTTTGATTTTA-CC-AAAC-AGTGGAAAGAAA
384 GAGTATTCATGTTTATCTTATTTAAGGGACAAACTTTGATTCTATCCAAAACGAGTGGAAAGAAA
* * * * * * **
1048715 AGCTTTTCTTGCGGCCCCAAAGCATCAATATCATGTATTCTAATGAAGGGAATGT-CCTTTAGCT
449 AGCTTTTCCTGCGACACCAAAGCTTCAATGTCATGTATTCTAAT-AAAGGAATGTGTTTTTAGCT
* * * ** * *
1048779 TACCAATCTTGAAAAGAATGGAGACTGTTACGAGAGTTGATGGTTGTCTTATTTAAGGTT-TAAA
513 T-CCAATCTTGAAATGAATGGAGACTATTACGAGAATCAATGGTTGTCTTATTTAA-ATTATGAA
* * * * * *
1048843 CTTTGGTTTAAAGGAAAATGGGGCAAAGAAAAGCTTTCCATACAAAAGAACATCATCAATATCAA
576 CTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCAT
* * * *
1048908 TTATTCTAAAGAGGGGAATGTGTTTATAATGCCTAATCACAAAATGAATGAAGATCATTACTTGA
641 TTATCCTAATGAGGAGAATGTGTTTAT-ATGCCTAATCACAAAATGAATGAAGATCATTACTAGA
* *
1048973 ATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACGAAAACT-AGTGGGAAAA-ATGCC
705 ATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGA-TGGGAAAATA-GCC
* * * ** * * *
1049036 TTTCTTGTGAAACAAAGCATTAATATGATGTATCCT-AATGGCAAGACTACGTTTATGTTGCCTA
768 TTTCATGCGAAACAAAGCATCAATATGATGTATCCTAAAAAG-AACACTACGTTGATGCTGCCTA
* * * * * *
1049100 ATCTTGAAAAAAATGGGGATTAGTATGAGTTTTCATGTTTGTTGCATATAAAAGACAAACTTTGA
832 ATCCTGAAAAGAATGGGGATTAGTATGAGTTTTCATCTTTGTCGTATTTAAAAGACAAACTTTGA
* * *** * * *
1049165 CTCGATCAAAAATAATGGAAAGAAAATCTTTTCTTGCGACACCAAAGCATC
897 TTCTATCAAAAACGGTGGGAAGAAAAGCTTTTCTTACGACACCAAAGCATC
* * * * * * * *
1049216 AATGTCTTGTGTCCAAATGAAGGAAAT-TATTTTTGCTTCCCAATATTGAAAAGAATAGAGTCTG
1 AATGTCATGTTTCCAAATGAAGGGAATGTGTTTTCGCTTCCCAATCTTGAAAAGAATGGAGTCTA
* * * * *
1049280 TTATGAGAATCGATACTTGTTTTATTTAAGGGATGCACTTAGATTTTAAGGAAAATAAGGCAAAG
66 TTATGAGAATCGATGCTTATCTTATTTAAGGGATGCACTTTGATTTTAAGGAAAATAGGGCAAAG
* * * * * *
1049345 AAAAGATTTCCATGCAAAAGAAAATCTTCAATATCATTTATCCTATTGAGGAGAACGTGTTTATG
131 AAAAGATTTCCATGGAAAAGAAAATCATCAATATCATTTATCTTAATGAGGAGAATGTGTTTATA
* * * * * * *
1049410 GAGCTTAATCACAAAATGAATAAAGATCAATACTAAAATCCATATTTGTCTCATTTGAGGCACAA
196 GTGCCTAATCATAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
*
1049475 ACTTAAACTTTACAAAAATTGGTT-GGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCG
261 ACTTAAACTTTACAAAAATT-CTTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATAT--
* * ** *
1049539 CGTATCCTAATGGGAAGACTATGCTTTATGGTGCCTAATCC-GAAAAAGAATAGGGATTCTTGTG
323 CGTATCCTAATGAGAAGACTATG-TTTATGGTGCCTAAACCTG-AAAAGAAT-GGGATTAGTATG
* * * * * * ***
1049603 ACTATTCATGTTTATCCTATTTAAGAGATAAACTTTTACTT-TATCAAAAACG-GCATAAAGAAA
385 AGTATTCATGTTTATCTTATTTAAGGGACAAACTTTGA-TTCTATCCAAAACGAGTGGAAAGAAA
* * * *
1049666 AGCTTTTCTTGCGACCCCAAAGCATCAATGTCATGTATTCTAATGAAGGGAA-GTG-TTTTAGCT
449 AGCTTTTCCTGCGACACCAAAGCTTCAATGTCATGTATTCTAAT-AAAGGAATGTGTTTTTAGCT
* * *
1049729 TCCCAATCTTGAAGA-GAATGAAGACT-TT-----TA-CAATGGTTGTCTTATTTAAGGTT-TGA
513 T-CCAATCTTGAA-ATGAATGGAGACTATTACGAGAATCAATGGTTGTCTTATTTAA-ATTATGA
* * * * * *
1049785 ACTTTGGTTTAAAGGAAAATGGGGCAAAGAAAATATTTTCATGCGAAAGAAAATCATTAATATCA
575 ACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCA
* ** *
1049850 TTTATCCTAATGAGGATAATGTGTTTATCATGCCTAATCATGAAATGAATGAATATCATTACTAG
640 TTTATCCTAATGAGGAGAATGTGTTTAT-ATGCCTAATCACAAAATGAATGAAGATCATTACTAG
* * * * * *
1049915 AATCCAAGTTTTTCTTATTTGAGGCATGAAC-T----TTTACAAAACTTG-TGGGAAAAAAGCCT
704 AATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGATGGGAAAATAGCCT
* ** *
1049974 TTCATGCGAAAGCAAAGCATCAACATGATGTATCCTAATGAGAACACTACGTTGATGCTGCTTAA
769 TTCATGCGAAA-CAAAGCATCAATATGATGTATCCTAAAAAGAACACTACGTTGATGCTGCCTAA
* * * * * *
1050039 TCTTGAAAAGAACGGGGATTAGTATGAGTTTTCATCTTTATTGTATGTAAGAGACAAACTTTGAT
833 TCCTGAAAAGAATGGGGATTAGTATGAGTTTTCATCTTTGTCGTATTTAAAAGACAAACTTTGAT
* *
1050104 TCTATCAAAAATGGTGGGAAGAAAAGCTTTTCTTACGACACCAAAGCATT
898 TCTATCAAAAACGGTGGGAAGAAAAGCTTTTCTTACGACACCAAAGCATC
* * *
1050154 AATGTCATGTTTCCAAATGAAGGGAATGTGCTTTCACTTCCCCATCTTGAAAAGAATGGAGTCTA
1 AATGTCATGTTTCCAAATGAAGGGAATGTGTTTTCGCTTCCCAATCTTGAAAAGAATGGAGTCTA
* * * * *
1050219 TTATGAAAATCGATGCTTATCTTATTTAAGGGAAGCACTTTCATTTTGAGGAAAATAGCGCAAAG
66 TTATGAGAATCGATGCTTATCTTATTTAAGGGATGCACTTTGATTTTAAGGAAAATAGGGCAAAG
* * * * *
1050284 AAAAGAATTGCAGGGAAAAGAAAATCATCATTATCATTTATCTTAATGTGGAGAATGTGTTTATA
131 AAAAGATTTCCATGGAAAAGAAAATCATCAATATCATTTATCTTAATGAGGAGAATGTGTTTATA
* * * *
1050349 GTGCCAAATCAAAAAATGAACGAAGATCAATACTAGAATCCATGTTTGTCTCGTTTGAGGCACGA
196 GTGCCTAATCATAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
* * * * *
1050414 ACATAAACCTTACAAAAATTTTTGGGAGGAAAGCCTTTCTTGTGACACCAAAGCATCAATATCGT
261 ACTTAAACTTTACAAAAATTCTTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGT
1050479 ATACCATAATGAGAAGACTATGTTTATGGTGCCTAAACCTGAAAAGAATGGCGATTAGTATGAGT
326 AT-CC-TAATGAGAAGACTATGTTTATGGTGCCTAAACCTGAAAAGAATGG-GATTAGTATGAGT
* *
1050544 ATTCATGTTTGTCTTATTTAAGGGACAAAATTTGATTCTATCCAAAACGA-TGGAAAGAAAAGCT
388 ATTCATGTTTATCTTATTTAAGGGACAAACTTTGATTCTATCCAAAACGAGTGGAAAGAAAAGCT
* * *
1050608 TTTCCTGCGACATCAAAGTTTCAATGTCATGTA-TCTTAATAAAAGGAATGTGTTTTTGGCTTCC
453 TTTCCTGCGACACCAAAGCTTCAATGTCATGTATTC-TAAT-AAAGGAATGTGTTTTTAGCTTCC
* * *
1050672 TAAACTTGAAATGAATGGAGACTATTACGAGAATCAATGGTTG-CTTTATTTAAATTATGCATTT
516 -AATCTTGAAATGAATGGAGACTATTACGAGAATCAATGGTTGTC-TTATTTAAATTATGAACTT
* * * *
1050736 TAATATAAAGGAAAATAAGGCGAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTA
579 TGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTA
1050801 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC
644 TCCTAATGAGGAGAATGTGTTTATA-TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC
* * * *
1050866 CTTGTTTGTCTTATTTGAGGCATGAACTTAGACTTTACAAAAATTGATAGGAAAATAGCCTTTCA
708 CATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGATGGGAAAATAGCCTTTCA
* *
1050931 TGCGAAATCAAAGCATCAGTATGATGTATCCTAAAAAGAACACTACGTTGATGCTGCCTAGTCCT
773 TGCGAAA-CAAAGCATCAATATGATGTATCCTAAAAAGAACACTACGTTGATGCTGCCTAATCCT
*
1050996 GAAAAGAATGGGGATTAGTATGAGTTTTCATCTTTGTCGTATTTAAAAGATAAACTTTGATTCTA
837 GAAAAGAATGGGGATTAGTATGAGTTTTCATCTTTGTCGTATTTAAAAGACAAACTTTGATTCTA
* * *
1051061 TTAAGAACGGTGGGAAGAAAAGCTTTTTTTACGACACCAAAGCATC
902 TCAAAAACGGTGGGAAGAAAAGCTTTTCTTACGACACCAAAGCATC
* * *
1051107 AATGTCATGTTTCCGACTGAAGGGAATGTGTTTTTGCTTCCCAATCTTGAAAAGAATGGAGTCTA
1 AATGTCATGTTTCCAAATGAAGGGAATGTGTTTTCGCTTCCCAATCTTGAAAAGAATGGAGTCTA
* * * * *
1051172 TTATGAGAATCGATGCTTGTTTTATTTAAAGGATGCACTTTGAGTTTAAGGAAAATAGGGCAAAA
66 TTATGAGAATCGATGCTTATCTTATTTAAGGGATGCACTTTGATTTTAAGGAAAATAGGGCAAAG
* * * *
1051237 AAAAGATTTTCATGGAAAAAAAAATCATCAATATCATTTATCTTAATGAGAAGAATGTATTTATA
131 AAAAGATTTCCATGGAAAAGAAAATCATCAATATCATTTATCTTAATGAGGAGAATGTGTTTATA
* * *
1051302 GTGCCTAATCATGAAATGAATGAAGATCAATACTTGAATCCATGTTTGTCTCATTTGAGGTACGA
196 GTGCCTAATCATAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
*
1051367 ACTTAAACTTTACAAAAATTCTTGGGAAGAAAGCCTTTCTTGTGAAACTAAAGCATCAATATCGA
261 ACTTAAACTTTACAAAAATTCTTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATC--
* *
1051432 GTATCCTAATGAGAAGACTATGTTTATGGTGACTAATCCTGAAAAGAATGGGGATTAGTATGAGT
324 GTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAACCTGAAAAGAAT-GGGATTAGTATGAGT
* ** *
1051497 ATTCATGTTTGTCTTATTTAAGGGACAAACTTTGATTCTAT-CAAAAATAGTGGACAGAAAAGCT
388 ATTCATGTTTATCTTATTTAAGGGACAAACTTTGATTCTATCCAAAACGAGTGGAAAGAAAAGCT
* * * * * *
1051561 TATCCTACAACACCAAAGCTTCAAGGTCATGTATTCTAATGAAGAGAATTTGTTTTTAGCTTCAC
453 TTTCCTGCGACACCAAAGCTTCAATGTCATGTATTCTAATAAAG-GAATGTGTTTTTAGCTTC-C
* * * * * * * * *
1051626 AATCTTGAAATAAATGGAGACTTTTACAAGAATCGATGCTTGTCTTATTTGAAGTATGTACTTCG
516 AATCTTGAAATGAATGGAGACTATTACGAGAATCAATGGTTGTCTTATTTAAATTATGAACTTTG
* *
1051691 ATTTAAAGGAAAATATGGCAAAGAAAAGATTTCCATGCAAAATAAAATCATCAATATCATTTATC
581 ATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATC
* * * * *
1051756 CTAATGGGGAGAATGTGTTTATCGTGCCTAATCACAAAATTAATGAAGTTCATTTCTAGAATCCA
646 CTAATGAGGAGAATGTGTTTAT-ATGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA
1051821 TGTT
710 TGTT
1051825 CATTTCTAGT
Statistics
Matches: 2999, Mismatches: 454, Indels: 180
0.83 0.12 0.05
Matches are distributed among these distances:
933 47 0.02
934 153 0.05
935 225 0.08
936 46 0.02
937 46 0.02
938 305 0.10
939 367 0.12
940 27 0.01
941 177 0.06
942 7 0.00
943 164 0.05
944 1 0.00
945 52 0.02
946 131 0.04
947 161 0.05
948 26 0.01
949 69 0.02
950 41 0.01
951 64 0.02
952 26 0.01
953 852 0.28
954 8 0.00
955 4 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (947 bp):
AATGTCATGTTTCCAAATGAAGGGAATGTGTTTTCGCTTCCCAATCTTGAAAAGAATGGAGTCTA
TTATGAGAATCGATGCTTATCTTATTTAAGGGATGCACTTTGATTTTAAGGAAAATAGGGCAAAG
AAAAGATTTCCATGGAAAAGAAAATCATCAATATCATTTATCTTAATGAGGAGAATGTGTTTATA
GTGCCTAATCATAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
ACTTAAACTTTACAAAAATTCTTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGT
ATCCTAATGAGAAGACTATGTTTATGGTGCCTAAACCTGAAAAGAATGGGATTAGTATGAGTATT
CATGTTTATCTTATTTAAGGGACAAACTTTGATTCTATCCAAAACGAGTGGAAAGAAAAGCTTTT
CCTGCGACACCAAAGCTTCAATGTCATGTATTCTAATAAAGGAATGTGTTTTTAGCTTCCAATCT
TGAAATGAATGGAGACTATTACGAGAATCAATGGTTGTCTTATTTAAATTATGAACTTTGATTTA
AAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
GAGGAGAATGTGTTTATATGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG
TCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGATGGGAAAATAGCCTTTCATGCGAAAC
AAAGCATCAATATGATGTATCCTAAAAAGAACACTACGTTGATGCTGCCTAATCCTGAAAAGAAT
GGGGATTAGTATGAGTTTTCATCTTTGTCGTATTTAAAAGACAAACTTTGATTCTATCAAAAACG
GTGGGAAGAAAAGCTTTTCTTACGACACCAAAGCATC
Found at i:1053204 original size:468 final size:471
Alignment explanation
Indices: 1051831--1053542 Score: 1797
Period size: 468 Copynumber: 3.6 Consensus size: 471
1051821 TGTTCATTTC
* * * *
1051831 TAGTATGAGTATTCATGTTTGCCATATTTAAGAGATAAATTTTGATTTTATCAAAAACGATGGAA
1 TAGTATGAGTATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTTTATCAAAAACAATGGAA
* * * *
1051896 AGAAAAGCTTTTCTTGCGACACCAAAGCTTTAATGTCATGT-TTCTAAAAGAAGGGAATGTGTTT
66 AGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATTCT-AATGAAAGGAATGTGTTT
* * * * * * *
1051960 TCGATTCCCAATCTTGAAAATAATGGAGTCTATTATGAGAATCAATGTTTGTCTTATTTAAATG-
130 TAGCTTCCCAATCTTGAAAAGAATGGAGACTATTAT----ATCGATGGTTGTCTTA-TTAAAGGT
* * *
1052024 ATGCACTTTGATTTTAAGGAAATTAGGGCAAAGAAAAGATTTCCACGCAAAAAAAAAAATCATCA
190 ATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCACGC-AAAAAAAAAA-CATCA
* * * * * *
1052089 ATATCATTTATCTTAATGAGGAGAATGTGTTTGTGGA-GCCTAATCGA-AAAGTGAATAAAGATC
253 ATATCATTTATCCTAAAGAGGAGAATGTGTTTAT-AATGCCTAATC-ACAAAATGAATGAAGATC
* * * * *
1052152 AATACTAGAATCCAAGTTTGTCTCTTTTGAGGAACGAACTT-GAGCTTTACAAAAATTAGTAGGA
316 AATACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGA-CTTTACAAAAACTAGTGGGA
* * * *
1052216 AGAAA-GCCTTTCTTATGAAACCAAAGCATCAATATCGTGGATCCTAATGAGAAGATTATGTTTT
380 A-AAATGCCTTTCTTATGAAACCAAAGCATCAATATTGTGTATCCTAATAAGAAGACTATG-TTT
* * * *
1052280 ATGGTGCGTAATCCGAAAAAGAATAGGGAT
443 ATGCTGCCTAATCTG-AAAAGAATGGGGAT
** * * * * * * **
1052310 TCTTGTAAGTATTCATGCTTATCCTATTTAAGAGACAAACTTTGATTTTACCAAAAACGGTGGAA
1 TAGTATGAGTATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTTTATCAAAAACAATGGAA
* * * * * * **
1052375 AGAAAGGCTTTTCCTGTGACCCCAAAGCATCAATGTCATGTATTCCAATGAAGGGAATGTCCTTT
66 AGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATTCTAATGAAAGGAATGTGTTTT
* ** * * * * *
1052440 AGCTTACCAATCTTGAAAAGAATAAAGACTGTTGCAAGAGTTGATGGTTGTCTTATTGAAGGTTT
131 AGCTTCCCAATCTTGAAAAGAATGGAGACTATT---ATA-TCGATGGTTGTCTTATTAAAGGTAT
* ** * * * * *
1052505 GAAATTTGGGTTAAAGGAAAATGGGGCAAAGAAAAGATTTCTATGC-AAAAGAAATCATCAATAT
192 GAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCACGCAAAAAAAAAACATCAATAT
* * * *
1052569 CATTTATCCTAAAGAGG-GAAATGTGTTTATAATGCCTAATCACGAAATGAATGAAAATTACTAC
257 CATTTATCCTAAAGAGGAG-AATGTGTTTATAATGCCTAATCACAAAATGAATGAAGATCAATAC
* * * *
1052633 TAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGATTTTACGAAAACTGGTGGGAAAAATG
321 TAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAACTAGTGGGAAAAATG
** * * *
1052698 CCTTTCTTGGGAAACCAAAGCATCAATA-TGACGTATCCTAAT-AGCAAGACTACGTTTATGTTG
386 CCTTTCTTATGAAACCAAAGCATCAATATTG-TGTATCCTAATAAG-AAGACTATGTTTATGCTG
1052761 CCTAATCTTGAAAAGAATGGGGAT
449 CCTAATC-TGAAAAGAATGGGGAT
* * ***
1052785 TAGTATGAGTGTTCATGTTTGTCATATTTAAGAGACAAACTTTGTTTTTATCAAAAACAACAAAA
1 TAGTATGAGTATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTTTATCAAAAACAATGGAA
* * *
1052850 AGAAAAGCTTTTCTTACGACCCCAAAGCATCAATATCATGTATTCTAATGAAAAGGAA-GTGTTT
66 AGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATTCTAATG-AAAGGAATGTGTTT
*
1052914 TAGCTTCCCAATCTTGAAAAGAATGGAGACT-TT-TAT-GATGGTTGTCTTATTAAAGGTTTGAA
130 TAGCTTCCCAATCTTGAAAAGAATGGAGACTATTATATCGATGGTTGTCTTATTAAAGGTATGAA
* * *
1052976 CTTTGGTTTAAAGGAAAATGGGGCAAAGAAAAGATTTCCACACAAAAAAAAAACATCAATATCAT
195 CTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCACGCAAAAAAAAAACATCAATATCAT
* *
1053041 TTATACTAAAGAGGAGAATGTGTTTATAATGCCTAATCACAAAATGAATGAAGATCATTACTAGA
260 TTATCCTAAAGAGGAGAATGTGTTTATAATGCCTAATCACAAAATGAATGAAGATCAATACTAGA
* *
1053106 ATCCATGTTTGTCTCAATTGAGGCACGAACTTAGACTTTA-AAAAACTAGTGGGAAAAATTCCTT
325 ATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAACTAGTGGGAAAAATGCCTT
* * *
1053170 TCTTATGAAACCAAAGCTTCAATATTGTGTATCCTACTAAGAAGACTATGTTTATGCTACCTAAT
390 TCTTATGAAACCAAAGCATCAATATTGTGTATCCTAATAAGAAGACTATGTTTATGCTGCCTAAT
* *
1053235 CCTAAAAAGAATGGTGAT
455 -CTGAAAAGAATGGGGAT
* * * * * * * * **
1053253 TAGAATGACTATTCAAGTTTGTCTTATATAAGAGGCAAACATTGATTCTATCAAAAACAGGGGAA
1 TAGTATGAGTATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTTTATCAAAAACAATGGAA
* * *
1053318 AGAAATA-CTTTTCTTGCGACACCAAAGCATCAATGTC-T-TATATCATAATGAAGGGAATCTAT
66 AGAAA-AGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAT-TC-TAATGAAAGGAATGTGT
* * * * * * *
1053380 TTTGGCTTCCCAATCTTGAAAGGAATGGAGA-TAGTTACGCGAATCGATGCTTGCCTTCTTTAAG
128 TTTAGCTTCCCAATCTTGAAAAGAATGGAGACTA-TTA----TATCGATGGTTGTCTTATTAAAG
* * * * * *
1053444 GGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGTAAAAGAAAATCATCA
188 GTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCACGCAAAAAAAAAACATCA
* * *
1053509 ATATCATTTGTCCTAATGAGGAGAATATGTTTAT
253 ATATCATTTATCCTAAAGAGGAGAATGTGTTTAT
1053543 CTCATTTGAA
Statistics
Matches: 1025, Mismatches: 176, Indels: 68
0.81 0.14 0.05
Matches are distributed among these distances:
466 3 0.00
467 10 0.01
468 268 0.26
469 123 0.12
470 2 0.00
474 4 0.00
475 262 0.26
476 155 0.15
477 9 0.01
478 6 0.01
479 179 0.17
480 3 0.00
482 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (471 bp):
TAGTATGAGTATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTTTATCAAAAACAATGGAA
AGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATTCTAATGAAAGGAATGTGTTTT
AGCTTCCCAATCTTGAAAAGAATGGAGACTATTATATCGATGGTTGTCTTATTAAAGGTATGAAC
TTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCACGCAAAAAAAAAACATCAATATCATT
TATCCTAAAGAGGAGAATGTGTTTATAATGCCTAATCACAAAATGAATGAAGATCAATACTAGAA
TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAACTAGTGGGAAAAATGCCTTT
CTTATGAAACCAAAGCATCAATATTGTGTATCCTAATAAGAAGACTATGTTTATGCTGCCTAATC
TGAAAAGAATGGGGAT
Found at i:1055819 original size:475 final size:475
Alignment explanation
Indices: 1053562--1057477 Score: 4259
Period size: 476 Copynumber: 8.3 Consensus size: 475
1053552 AGGAAGGTCA
* *
1053562 TATTTAAGAGACAAACTTTGATTCTATCAAAAATAGTGGAAAGAAAATCTTTTTTTGCTG-CACC
1 TATTTAAGAGACAAACTTTGATTCTATCAAAAATAGTGGAAAGAAAAGCTTTTCTTGC-GACACC
* *
1053626 AAAGCATCAATGTCATGTATCCTAATGAAGGGAATATGT-TTTTTGCTTCCCAATCTCGAAAAGA
65 AAAGCATCAATGTCATGTATCCTAATGAAGGGAA-ATGTGTTTTGGCTTCCCAATCTTGAAAAGA
* * *
1053690 ATGGAGATTGTTATGAGAAATAATGCTTGTC-----T------T-AACTTTGATTTAAAGGAAAA
129 ATGGAGACTGTTATGAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAA
* * *
1053743 TAGGGCAAAGAAAATATTTCCATGCAAAAAAAATCATCTATATCATTTATCCTAAAGAGAAGAAT
194 TAGGGCAAAGAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTTATCCTAAAGAGGAGAAT
* *
1053808 GTGTATATAGTGCC-AATAACAAAATGAATGAAGATCATTATTAGAATCCATGTTTGTCTCATTT
259 GTGTTTATAGTGCCTAATAACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT
* * * *
1053872 GAGGCACGAACATAGACTTTACAAAAACTAGTGGGAAAAATGCCTTTCTTGCAAAACCAAAGCAT
324 GAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCAT
* * * * * * *
1053937 CAGTATTGTGTATCCTACTAAGAAAACTATGTTTATGCTGCCTAATCCTAAAAAGCATGCTGATT
389 CAATATTGTGTATCCTAATGAGAAGACTATGTTTATGCTGCCTAATCCTGAAAAGAATG-GGATT
* *
1054002 AGTATGACTATTTAAGTTTGTCT
453 AGTATGACTATTCATGTTTGTCT
* * * * * *
1054025 TATATAAGAGGCAAACATTGATTCTATCAAAAA-CGATGGAAATAAAAGCTTTTCATGCGACACC
1 TATTTAAGAGACAAACTTTGATTCTATCAAAAATAG-TGGAAAGAAAAGCTTTTCTTGCGACACC
* ** * * * *
1054089 ACAA-CATAAATGTCAAATTTCC-AATTGCA-GG-AATGTGTTTTCAGC-TCCCAATCTTGAAAG
65 A-AAGCATCAATGTCATGTATCCTAA-TGAAGGGAAATGTGTTTT-GGCTTCCCAATCTTGAAAA
* ** * * *
1054149 GAATGGTGTTTGTTATGAGAATTGATGCTTGGCGTATTTAAGGGATGCACTTTGATTTTAAA-GA
127 GAATGGAGACTGTTATGAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGA-TTTAAAGGA
* * * *
1054213 AAATAAGGCAATGAAAAGATTTCCGTGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGA
191 AAATAGGGCAAAGAAAAGATTTCCATGCAAAA-AAAATCATCAATATCATTTATCCTAAAGAGGA
* * * *
1054278 GAATGTGTTTATCGTGCCTAATAACAAAATAAATGAAGATCATTACTAGAATCCATGTTTATCTT
255 GAATGTGTTTATAGTGCCTAATAACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTC
* *
1054343 ATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGAGAAAAAAGCCTTT-TATGCAAAACCAA
320 ATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCT-TGCAAAACCAA
* *
1054407 AGTATCAATA-TGATGTATCCTAATGAGAAGACTATGTTTATG-TAACCTAATCCTGAAAAGAAT
384 AGCATCAATATTG-TGTATCCTAATGAGAAGACTATGTTTATGCT-GCCTAATCCTGAAAAGAAT
* * * * * *
1054470 ATGAATTAGTGTGACTTTTCAAGTTTGTCA
447 -GGGATTAGTATGACTATTCATGTTTGTCT
* ** * *
1054500 TATTTAAGAGAAAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCAACATCA
1 TATTTAAGAGACAAACTTTGATTCTATCAAAAATAGTGGAAAGAAAAGCTTTTCTTGCGACACCA
* * * * * * * *
1054565 AAGCATAAATGTCCTATTTCC-AACTGAAGGG-AATGTATTTTGGCTTCCCACTCCTGAAATGAA
66 AAGCATCAATGTCATGTATCCTAA-TGAAGGGAAATGTGTTTTGGCTTCCCAATCTTGAAAAGAA
* * *
1054628 TGGTGTA-TGTTATGAGAATTGATGTTTGTCTTATTTAAGGGATGTACTTTGATTTGAAA-GAAA
130 TGGAG-ACTGTTATGAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTT-AAAGGAAA
* * * * *
1054691 ATAAGGCAAAAAAAAAGATTTTCATGTAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGA
193 ATAGGGC-AAAGAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTTATCCTAAAGAGGAGA
* * *
1054756 ATGTGTTTATCGTGCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCAT
257 ATGTGTTTATAGTGCCTAATAACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCAT
*
1054821 TTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCAAAACCAAAGC
322 TTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGC
* * * * * *
1054886 ATAAATATCGTGTATCCTACTGAGAAGACTATGTTTATGCTGCCTAATCCTTAAAAAAAAGGAGA
387 ATCAATATTGTGTATCCTAATGAGAAGACTATGTTTATGCTGCCTAATCCTGAAAAGAATGG-GA
* *
1054951 TTTA-TATGAGTATTTATGTTTGTCT
451 -TTAGTATGACTATTCATGTTTGTCT
** * * * * *
1054976 GGTTTAAGGGGCAAACTTTGATTCTATC-------------A-AAAA-CCTATCTT-CGACACTA
1 TATTTAAGAGACAAACTTTGATTCTATCAAAAATAGTGGAAAGAAAAGCTTTTCTTGCGACACCA
* * * ** * *
1055025 AAGCATCAATGTCATGTTTCCAAAAGAAGGG-AATGTGTTTCCGATTCACAATCTTGAAAAGAAT
66 AAGCATCAATGTCATGTATCCTAATGAAGGGAAATGTGTTTTGGCTTCCCAATCTTGAAAAGAAT
* * ** * * *
1055089 GGAGTCTGTTGTGAGAAGCGATGCTTGTCATATTTAAGGGATGCACTTTGATTTTAAGGAAAATA
131 GGAGACTGTTATGAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATA
* * *
1055154 GGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCTTAAAGAGAAGAATG
196 GGGCAAAGAAAAGATTTCCATGCAAAA-AAAATCATCAATATCATTTATCCTAAAGAGGAGAATG
* * * * * * *
1055219 TGTTTGTGGAGCCTAATCACAAAATGAATGAAAATCAATACTAGAATCAATGTTTGTCTCATTTG
260 TGTTTATAGTGCCTAATAACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG
* * * ** *
1055284 AGGCAC-AATCATAAACTTTACAAAAATTGGT-GAAAAGAAAGCCTCTT-TTGGGAAACCAAAGT
325 AGGCACGAA-CTTAGACTTTACAAAAATTGGTGGGAAA-AAAGCCT-TTCTTGCAAAACCAAAGC
* * * *
1055346 ATTAATATTGTGTATCTTAATGAGAAGACTATGTTTATGCTGCGTAATCCTGAAAAGAGTGGGAA
387 ATCAATATTGTGTATCCTAATGAGAAGACTATGTTTATGCTGCCTAATCCTGAAAAGAATGGG-A
* *
1055411 TTAGTATGAGTATTCATGTTTCTCT
451 TTAGTATGACTATTCATGTTTGTCT
* * *
1055436 TATTTAAGGGACAAACTTTGATTCTACCAAAAATAGTGGAAAGAAAAGCTTTTCTTGCGACAGCA
1 TATTTAAGAGACAAACTTTGATTCTATCAAAAATAGTGGAAAGAAAAGCTTTTCTTGCGACACCA
* * *
1055501 AAGCATCAATGTTATGTATCCTAATGAAGGGAAAATGTCTTTT-GCTTCCTAATCTTG-AAAGAA
66 AAGCATCAATGTCATGTATCCTAATGAAGGG-AAATGTGTTTTGGCTTCCCAATCTTGAAAAGAA
* ** *
1055564 TGGAGAGTGTTATGAGAAACGATGCTTGTCTTATTTGAA-GTATGAACTTTGATTTAAAGGAAAA
130 TGGAGACTGTTATGAGAATTGATGCTTGTCTTATTT-AAGGGATGAACTTTGATTTAAAGGAAAA
1055628 TAGGGCAAAGAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTTATCCTAAAGAGGAGAAT
194 TAGGGCAAAGAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTTATCCTAAAGAGGAGAAT
* * * *
1055693 GTCTTTATAGTGCTTAATAACAAAATGCATGAAGATCATTACTAGAATACATGTTTGTCTCATTT
259 GTGTTTATAGTGCCTAATAACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT
* * * * *
1055758 GAGGCACGAACATAGACTTTACAAAAACTGTTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCAT
324 GAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCAT
* * * *
1055823 CAATATCGTGTATCCTACTATGA-AA-ACTATGCTTATGCTGCCTAATCCTAAAAAGAATGCTGA
389 CAATATTGTGTATCCTA--ATGAGAAGACTATGTTTATGCTGCCTAATCCTGAAAAGAATG-GGA
* *
1055886 TTAGCATGACTATTCAAGTTTGTCT
451 TTAGTATGACTATTCATGTTTGTCT
* * * *
1055911 TATATAAGAGGCAAACATTGATTCTAT-AAAAA-ACGATGGAAATAAAAGCTTTTCTTGCGACAC
1 TATTTAAGAGACAAACTTTGATTCTATCAAAAATA-G-TGGAAAGAAAAGCTTTTCTTGCGACAC
* * * * * * * * *
1055974 CAATGCATAAATGTCCTGT-TCCCAATTGTAGAG-AATGTGTTTTCGCCTCCCAAACTTGAAAAG
64 CAAAGCATCAATGTCATGTATCCTAA-TGAAGGGAAATGTGTTTTGGCTTCCCAATCTTGAAAAG
* * * * * * * *
1056037 AATGGTGTCTGTTATGAGAATTTAAGCTTGGCTTATTTAAGGGATGCACTTTGGTTTTAAGGAAA
128 AATGGAGACTGTTATGAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAA
* *
1056102 ATAGGGCAAAGAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTTATCTTAATGAGGAGAA
193 ATAGGGCAAAGAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTTATCCTAAAGAGGAGAA
* * *
1056167 TGTGTTTATCGTGCCTAATAACAAAATGAATGAAGATCATTAATAGAATCCATGTTTGTCTTATT
258 TGTGTTTATAGTGCCTAATAACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATT
* * *
1056232 TGAGGTACGAACTTAGACTTTACAAAAATTAGTGGGAAAAAAGCCTTTCTTGTAAAACCAAAGCA
323 TGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCA
** * * * *
1056297 TCAATATAATGTATCCTAATGAGAAGACTATGTTTAAGGTTCCTAATCTTGAAAAGAATGGGGAT
388 TCAATATTGTGTATCCTAATGAGAAGACTATGTTTATGCTGCCTAATCCTGAAAAGAAT-GGGAT
* * * * * *
1056362 TACTATAAGTATTCATTTTTTTCA
452 TAGTATGACTATTCATGTTTGTCT
* * * * * * *
1056386 TAGTTTTAAAAGATAAACTTTGATTCTATAAAAAATGGTGGAAATAAATA-CTTTTGTTACGACA
1 TA--TTTAAGAGACAAACTTTGATTCTATCAAAAATAGTGGAAAGAAA-AGCTTTTCTTGCGACA
* *
1056450 CCAAAGCATCAATGTCATGCATCCTAATGAAAGG-AATGTGTATTTGGCTTCCCAATCTTGAAAA
63 CCAAAGCATCAATGTCATGTATCCTAATGAAGGGAAATGTGT-TTTGGCTTCCCAATCTTGAAAA
* * * *
1056514 TAATGGAGACTATTATGAGAATTGATGCTTGTCTTATTTCAA-GGATGAACTTTGATTTTATGGA
127 GAATGGAGACTGTTATGAGAATTGATGCTTGTCTTATTT-AAGGGATGAACTTTGATTTAAAGGA
* * * * *
1056578 AAATAGGGCAAAGAAAAGATTTCTATGCAAAAAAATATCGTTAATATCATTTTTCCTAAGGAGGA
191 AAATAGGGCAAAGAAAAGATTTCCATGCAAAAAAA-ATCATCAATATCATTTATCCTAAAGAGGA
* * * * *
1056643 GAATGTGTTTATA---CCTAATCACAAAATTAATAAAAATCATTACTAGAATCCATGTTTGTCTG
255 GAATGTGTTTATAGTGCCTAATAACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTC
* ** * ** **
1056705 ATTTGAGGTACGAACTTAGACTTTATGAAAATTGGTAGGAAAAAAGTTTTTCTTGTGAAACCAAA
320 ATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAA
* * * * *
1056770 GCATCAATA-TGATGTATCCTAATAAGAAAACTTTGTTTATGGTTCCTAATCCTGAAAAGAATAG
385 GCATCAATATTG-TGTATCCTAATGAGAAGACTATGTTTATGCTGCCTAATCCTGAAAAGAAT-G
* *
1056834 GGATTAGTATAACTATTCATGTTTATCT
448 GGATTAGTATGACTATTCATGTTTGTCT
* * * * * **
1056862 TATTTAAGAGACAAACTTTTATTCTATGAAAAATGGTGGAAAGAAAAGATTTTCCTATGACACCA
1 TATTTAAGAGACAAACTTTGATTCTATCAAAAATAGTGGAAAGAAAAGCTTTTCTTGCGACACCA
* * * * * *
1056927 AAGAATCAATGTCATGTATCTTATTAAAGGG-AATGTGTTTTGGCTTCCTAATCTTGAAAAAAAT
66 AAGCATCAATGTCATGTATCCTAATGAAGGGAAATGTGTTTTGGCTTCCCAATCTTGAAAAGAAT
** * * * * * *
1056991 GGAGACTGTTACAAGAATCGATCCTTGTCTCACTTAAGCGATGAACTTTGATTTTAAGGAAAATA
131 GGAGACTGTTATGAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATA
* * * *
1057056 GGGTAAAGAAAAGCTTTCCATGCAAAAGAAAATCATTAATATCATTTATCC-AAATAAGGAGAAT
196 GGGCAAAGAAAAGATTTCCATGCAAAA-AAAATCATCAATATCATTTATCCTAAA-GAGGAGAAT
* * * *
1057120 TTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATAT
259 GTGTTTATAGTGCCTAATAACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT
* * ** *
1057185 GAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTTTTGTGAAACCAAGGCAT
324 GAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCAT
* * * * *
1057250 CAATA-TGATGTATCCTAATGAAAAAACTACGTTTATGGTGCTTAAT-CTAGAAAAGAATAGGGA
389 CAATATTG-TGTATCCTAATGAGAAGACTATGTTTATGCTGCCTAATCCT-GAAAAGAAT-GGGA
* * *
1057313 TTAGTATAAGTATTCATGTTTGTCA
451 TTAGTATGACTATTCATGTTTGTCT
* * * * * * *
1057338 TATTTAAAAGCCAAACTTTGATTCTATCAAAAACAGT-GAAAAAAAATCTTTTCTTTCAACACCA
1 TATTTAAGAGACAAACTTTGATTCTATCAAAAATAGTGGAAAGAAAAGCTTTTCTTGCGACACCA
* * *
1057402 AAGCATCAATGTCATGCATCCTAATGAAGAG-AATGTGTTTTTGGCTTCCCAATCTTGAAAAGTA
66 AAGCATCAATGTCATGTATCCTAATGAAGGGAAATGTG-TTTTGGCTTCCCAATCTTGAAAAGAA
1057466 TGGAGACTGTTA
130 TGGAGACTGTTA
1057478 CAATAATCAA
Statistics
Matches: 2920, Mismatches: 434, Indels: 185
0.83 0.12 0.05
Matches are distributed among these distances:
459 33 0.01
460 346 0.12
461 56 0.02
462 12 0.00
463 71 0.02
464 2 0.00
466 1 0.00
472 5 0.00
473 188 0.06
474 176 0.06
475 874 0.30
476 884 0.30
477 110 0.04
478 124 0.04
479 38 0.01
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.32
Consensus pattern (475 bp):
TATTTAAGAGACAAACTTTGATTCTATCAAAAATAGTGGAAAGAAAAGCTTTTCTTGCGACACCA
AAGCATCAATGTCATGTATCCTAATGAAGGGAAATGTGTTTTGGCTTCCCAATCTTGAAAAGAAT
GGAGACTGTTATGAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATA
GGGCAAAGAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTTATCCTAAAGAGGAGAATGT
GTTTATAGTGCCTAATAACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA
GGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCA
ATATTGTGTATCCTAATGAGAAGACTATGTTTATGCTGCCTAATCCTGAAAAGAATGGGATTAGT
ATGACTATTCATGTTTGTCT
Found at i:1057480 original size:476 final size:472
Alignment explanation
Indices: 1053562--1057477 Score: 4012
Period size: 475 Copynumber: 8.3 Consensus size: 472
1053552 AGGAAGGTCA
* * *
1053562 TATTTAAGAGACAAACTTTGATTCTATCAAAAATAGTGGAAAGAAAATCTTTTTTTGCTG-CACC
1 TATTTAAGAGACAAACTTTGATTCTATAAAAAATAGTGGAAAAAAAATCTTTTCTTGC-GACACC
* * * *
1053626 AAAGCATCAATGTCATGTATCCTAATGAAGGGAATATGTTTTTTGCTTCCCAATCTCGAAAAGAA
65 AAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTG-TTTTGGCTTCCCAATCTTGAAAAGAA
* * *
1053691 TGGAGATTGTTATGAGAAAT-AATGCTTGTC-----T-----T-AACTTTGATTTAAAGGAAAAT
129 TGGAGACTGTTATGAG-AATCGATGCTTGTCTTATTTAAGGATGAACTTTGATTTTAAGGAAAAT
* * *
1053744 AGGGCAAAGAAAATATTTCCATGCAAAAAAAATCATCTATATCATTTATCCTAAAGAGAAGAATG
193 AGGGCAAAGAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTTATCC-AAAGAGGAGAATG
* * *
1053809 TGTATATAGTGCC-AATAACAAAATGAATGAAGATCATTATTAGAATCCATGTTTGTCTCATTTG
257 TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG
* * * * * **
1053873 AGGCACGAACATAGACTTTACAAAAACTAGTGGGAAAAATGCCTTTCTTGCAAAACCAAAGCATC
322 AGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTTTTGTGAAACCAAAGCATC
* * * * * *
1053938 AGTATTG-TGTATCCTACT-AAGAAAACTATGTTTATGCTGCCTAATCCTAAAAAGCATGCTGAT
387 AATA-TGATGTATCCTAATGAA-AAAACTATGTTTATGGTGCCTAATCCTGAAAAGAATG-GGAT
* * * *
1054001 TAGTATGACTATTTAAGTTTGTCT
449 TAGTATAAGTATTCATGTTTGTCT
* * * * * * * *
1054025 TATATAAGAGGCAAACATTGATTCTATCAAAAA-CGATGGAAATAAAAGCTTTTCATGCGACACC
1 TATTTAAGAGACAAACTTTGATTCTATAAAAAATAG-TGGAAAAAAAATCTTTTCTTGCGACACC
* ** * * * *
1054089 ACAA-CATAAATGTCAAATTTCC-AATTGCAG-GAATGTGTTTTCAGC-TCCCAATCTTGAAAGG
65 A-AAGCATCAATGTCATGTATCCTAA-TGAAGAGAATGTGTTTT-GGCTTCCCAATCTTGAAAAG
* ** * * * * *
1054150 AATGGTGTTTGTTATGAGAATTGATGCTTGGCGTATTTAAGGGATGCACTTTGATTTTAAAGAAA
127 AATGGAGACTGTTATGAGAATCGATGCTTGTCTTATTTAA-GGATGAACTTTGATTTTAAGGAAA
* * * *
1054215 ATAAGGCAATGAAAAGATTTCCGTGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA
191 ATAGGGCAAAGAAAAGATTTCCATGCAAAA-AAAATCATCAATATCATTTATCC-AAAGAGGAGA
* * * * *
1054280 ATGTGTTTATCGTGCCTAATAACAAAATAAATGAAGATCATTACTAGAATCCATGTTTATCTTAT
254 ATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCAT
* * * ** *
1054345 TTGAGGCATGAACTTAGACTTTACAAAAATTGGTGAGAAAAAAGCCTTTTATGCAAAACCAAAGT
319 TTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTTTTGTGAAACCAAAGC
* * * * *
1054410 ATCAATATGATGTATCCTAATGAGAAGACTATGTTTAT-GTAACCTAATCCTGAAAAGAATATGA
384 ATCAATATGATGTATCCTAATGAAAAAACTATGTTTATGGT-GCCTAATCCTGAAAAGAAT-GGG
* * * * * *
1054474 ATTAGTGTGACTTTTCAAGTTTGTCA
447 ATTAGTATAAGTATTCATGTTTGTCT
* * ** * * * *
1054500 TATTTAAGAGAAAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCAACATCA
1 TATTTAAGAGACAAACTTTGATTCTATAAAAAATAGTGGAAAAAAAATCTTTTCTTGCGACACCA
* * * * * * * * *
1054565 AAGCATAAATGTCCTATTTCC-AACTGAAGGGAATGTATTTTGGCTTCCCACTCCTGAAATGAAT
66 AAGCATCAATGTCATGTATCCTAA-TGAAGAGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAAT
* * * * * *
1054629 GGTGTA-TGTTATGAGAATTGATGTTTGTCTTATTTAAGGGATGTACTTTGATTTGAAAGAAAAT
130 GGAG-ACTGTTATGAGAATCGATGCTTGTCTTATTTAA-GGATGAACTTTGATTTTAAGGAAAAT
* * * * *
1054693 AAGGCAAAAAAAAAGATTTTCATGTAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
193 AGGGC-AAAGAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTTATCC-AAAGAGGAGAAT
* *
1054758 GTGTTTATCGTGCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT
256 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT
* * **
1054823 GAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCAAAACCAAAGCAT
321 GAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTTTTGTGAAACCAAAGCAT
* * * * * * * *
1054888 AAATATCG-TGTATCCTACTGAGAAGACTATGTTTATGCTGCCTAATCCTTAAAAAAAAGGAGAT
386 CAATAT-GATGTATCCTAATGAAAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAATGG-GA-
* *
1054952 TTA-TATGAGTATTTATGTTTGTCT
448 TTAGTATAAGTATTCATGTTTGTCT
** * * * * * *
1054976 GGTTTAAGGGGCAAACTTTGATTC---------TA-T----CAAAAA-CCTATCTT-CGACACTA
1 TATTTAAGAGACAAACTTTGATTCTATAAAAAATAGTGGAAAAAAAATCTTTTCTTGCGACACCA
* * * * ** * *
1055025 AAGCATCAATGTCATGTTTCCAAAAGAAGGGAATGTGTTTCCGATTCACAATCTTGAAAAGAATG
66 AAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATG
* * * * *
1055090 GAGTCTGTTGTGAGAAGCGATGCTTGTCATATTTAAGGGATGCACTTTGATTTTAAGGAAAATAG
131 GAGACTGTTATGAGAATCGATGCTTGTCTTATTTAA-GGATGAACTTTGATTTTAAGGAAAATAG
* * *
1055155 GGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCTTAAAGAGAAGAATGT
195 GGCAAAGAAAAGATTTCCATGCAAAA-AAAATCATCAATATCATTTATC-CAAAGAGGAGAATGT
* * * * * *
1055220 GTTTGTGGAGCCTAATCACAAAATGAATGAAAATCAATACTAGAATCAATGTTTGTCTCATTTGA
258 GTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA
* * * * * *
1055285 GGCAC-AATCATAAACTTTACAAAAATTGGT-GAAAAGAAAGCCTCTTTTGGGAAACCAAAGTAT
323 GGCACGAA-CTTAGACTTTACAAAAATTGGTGGGAAA-AAAGCCTTTTTTGTGAAACCAAAGCAT
* * * * * * *
1055348 TAATATTG-TGTATCTTAATGAGAAGACTATGTTTATGCTGCGTAATCCTGAAAAGAGTGGGAAT
386 CAATA-TGATGTATCCTAATGAAAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGG-AT
* *
1055412 TAGTATGAGTATTCATGTTTCTCT
449 TAGTATAAGTATTCATGTTTGTCT
* ** * * *
1055436 TATTTAAGGGACAAACTTTGATTCTACCAAAAATAGTGGAAAGAAAAGCTTTTCTTGCGACAGCA
1 TATTTAAGAGACAAACTTTGATTCTATAAAAAATAGTGGAAAAAAAATCTTTTCTTGCGACACCA
* * * *
1055501 AAGCATCAATGTTATGTATCCTAATGAAGGGAAAATGTCTTTT-GCTTCCTAATCTTG-AAAGAA
66 AAGCATCAATGTCATGTATCCTAATGAA--GAGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAA
* * * *
1055564 TGGAGAGTGTTATGAGAAACGATGCTTGTCTTATTTGAAGTATGAACTTTGATTTAAAGGAAAAT
129 TGGAGACTGTTATGAGAATCGATGCTTGTCTTATTT-AAGGATGAACTTTGATTTTAAGGAAAAT
1055629 AGGGCAAAGAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTTATCCTAAAGAGGAGAATG
193 AGGGCAAAGAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTTATCC-AAAGAGGAGAATG
* * * * *
1055694 TCTTTATAGTGCTTAATAACAAAATGCATGAAGATCATTACTAGAATACATGTTTGTCTCATTTG
257 TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG
* * * * * *
1055759 AGGCACGAACATAGACTTTACAAAAACTGTTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATC
322 AGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTTTTGTGAAACCAAAGCATC
* * * *
1055824 AATATCG-TGTATCCTACTATG--AAAACTATGCTTATGCTGCCTAATCCTAAAAAGAATGCTGA
387 AATAT-GATGTATCCTA--ATGAAAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAATG-GGA
* * * *
1055886 TTAGCATGACTATTCAAGTTTGTCT
448 TTAGTATAAGTATTCATGTTTGTCT
* * * * * *
1055911 TATATAAGAGGCAAACATTGATTCTATAAAAAA-CGATGGAAATAAAAGCTTTTCTTGCGACACC
1 TATTTAAGAGACAAACTTTGATTCTATAAAAAATAG-TGGAAAAAAAATCTTTTCTTGCGACACC
* * * * * * * *
1055975 AATGCATAAATGTCCTGT-TCCCAATTGTAGAGAATGTGTTTTCGCCTCCCAAACTTGAAAAGAA
65 AAAGCATCAATGTCATGTATCCTAA-TGAAGAGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAA
* * ** * * * *
1056039 TGGTGTCTGTTATGAGAATTTAAGCTTGGCTTATTTAAGGGATGCACTTTGGTTTTAAGGAAAAT
129 TGGAGACTGTTATGAGAATCGATGCTTGTCTTATTTAA-GGATGAACTTTGATTTTAAGGAAAAT
* *
1056104 AGGGCAAAGAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTTATCTTAATGAGGAGAATG
193 AGGGCAAAGAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTTATC-CAAAGAGGAGAATG
* * * *
1056169 TGTTTATCGTGCCTAATAACAAAATGAATGAAGATCATTAATAGAATCCATGTTTGTCTTATTTG
257 TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG
* * * *
1056234 AGGTACGAACTTAGACTTTACAAAAATTAGTGGGAAAAAAGCCTTTCTTGTAAAACCAAAGCATC
322 AGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTTTTGTGAAACCAAAGCATC
* * * * * *
1056299 AATATAATGTATCCTAATGAGAAGACTATGTTTAAGGTTCCTAATCTTGAAAAGAATGGGGATTA
387 AATATGATGTATCCTAATGAAAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAAT-GGGATTA
* * * *
1056364 CTATAAGTATTCATTTTTTTCA
451 GTATAAGTATTCATGTTTGTCT
* * * * * *
1056386 TAGTTTTAAAAGATAAACTTTGATTCTATAAAAAATGGTGG-AAATAAATACTTTTGTTACGACA
1 TA--TTTAAGAGACAAACTTTGATTCTATAAAAAATAGTGGAAAAAAAAT-CTTTTCTTGCGACA
*
1056450 CCAAAGCATCAATGTCATGCATCCTAATGAA-AGGAATGTGTATTTGGCTTCCCAATCTTGAAAA
63 CCAAAGCATCAATGTCATGTATCCTAATGAAGA-GAATGTGT-TTTGGCTTCCCAATCTTGAAAA
* * * *
1056514 TAATGGAGACTATTATGAGAATTGATGCTTGTCTTATTTCAAGGATGAACTTTGATTTTATGGAA
126 GAATGGAGACTGTTATGAGAATCGATGCTTGTCTTATTT-AAGGATGAACTTTGATTTTAAGGAA
* * * * *
1056579 AATAGGGCAAAGAAAAGATTTCTATGCAAAAAAATATCGTTAATATCATTTTTCCTAAGGAGGAG
190 AATAGGGCAAAGAAAAGATTTCCATGCAAAAAAA-ATCATCAATATCATTTATCC-AAAGAGGAG
* * * *
1056644 AATGTGTTTATA---CCTAATCACAAAATTAATAAAAATCATTACTAGAATCCATGTTTGTCTGA
253 AATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCA
* ** * *
1056706 TTTGAGGTACGAACTTAGACTTTATGAAAATTGGTAGGAAAAAAG-TTTTTCTTGTGAAACCAAA
318 TTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTT-TTGTGAAACCAAA
* *
1056770 GCATCAATATGATGTATCCTAAT-AAGAAAACTTTGTTTATGGTTCCTAATCCTGAAAAGAATAG
382 GCATCAATATGATGTATCCTAATGAA-AAAACTATGTTTATGGTGCCTAATCCTGAAAAGAAT-G
* *
1056834 GGATTAGTATAACTATTCATGTTTATCT
445 GGATTAGTATAAGTATTCATGTTTGTCT
* * * * ** * **
1056862 TATTTAAGAGACAAACTTTTATTCTATGAAAAATGGTGGAAAGAAAAGATTTTCCTATGACACCA
1 TATTTAAGAGACAAACTTTGATTCTATAAAAAATAGTGGAAAAAAAATCTTTTCTTGCGACACCA
* * * * * * *
1056927 AAGAATCAATGTCATGTATCTTATTAAAGGGAATGTGTTTTGGCTTCCTAATCTTGAAAAAAATG
66 AAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATG
** * * *
1056992 GAGACTGTTACAAGAATCGATCCTTGTCTCACTTAAGCGATGAACTTTGATTTTAAGGAAAATAG
131 GAGACTGTTATGAGAATCGATGCTTGTCTTATTTAAG-GATGAACTTTGATTTTAAGGAAAATAG
* * * * *
1057057 GGTAAAGAAAAGCTTTCCATGCAAAAGAAAATCATTAATATCATTTATCCAAATAAGGAGAATTT
195 GGCAAAGAAAAGATTTCCATGCAAAA-AAAATCATCAATATCATTTATCCAAA-GAGGAGAATGT
* *
1057122 GTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATATGA
258 GTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA
* *
1057187 GGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTTTTGTGAAACCAAGGCATCA
323 GGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTTTTGTGAAACCAAAGCATCA
* *
1057252 ATATGATGTATCCTAATGAAAAAACTACGTTTATGGTGCTTAAT-CTAGAAAAGAATAGGGATTA
388 ATATGATGTATCCTAATGAAAAAACTATGTTTATGGTGCCTAATCCT-GAAAAGAAT-GGGATTA
*
1057316 GTATAAGTATTCATGTTTGTCA
451 GTATAAGTATTCATGTTTGTCT
* * * * * *
1057338 TATTTAAAAGCCAAACTTTGATTCTATCAAAAACAGT-GAAAAAAAATCTTTTCTTTCAACACCA
1 TATTTAAGAGACAAACTTTGATTCTATAAAAAATAGTGGAAAAAAAATCTTTTCTTGCGACACCA
* *
1057402 AAGCATCAATGTCATGCATCCTAATGAAGAGAATGTGTTTTTGGCTTCCCAATCTTGAAAAGTAT
66 AAGCATCAATGTCATGTATCCTAATGAAGAGAATGTG-TTTTGGCTTCCCAATCTTGAAAAGAAT
1057467 GGAGACTGTTA
130 GGAGACTGTTA
1057478 CAATAATCAA
Statistics
Matches: 2898, Mismatches: 452, Indels: 193
0.82 0.13 0.05
Matches are distributed among these distances:
459 31 0.01
460 343 0.12
461 51 0.02
462 16 0.01
463 71 0.02
464 2 0.00
466 2 0.00
469 2 0.00
470 1 0.00
472 6 0.00
473 191 0.07
474 154 0.05
475 883 0.30
476 876 0.30
477 113 0.04
478 119 0.04
479 37 0.01
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.32
Consensus pattern (472 bp):
TATTTAAGAGACAAACTTTGATTCTATAAAAAATAGTGGAAAAAAAATCTTTTCTTGCGACACCA
AAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATG
GAGACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGATGAACTTTGATTTTAAGGAAAATAGG
GCAAAGAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTTATCCAAAGAGGAGAATGTGTT
TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGC
ACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTTTTGTGAAACCAAAGCATCAATA
TGATGTATCCTAATGAAAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGATTAGTATA
AGTATTCATGTTTGTCT
Found at i:1060755 original size:13 final size:13
Alignment explanation
Indices: 1060737--1060788 Score: 50
Period size: 13 Copynumber: 3.5 Consensus size: 13
1060727 AGCTTCGTAG
1060737 CGATACATTGTAT
1 CGATACATTGTAT
1060750 CGATACAAAACTTATGTAT
1 CGATAC---A-TT--GTAT
1060769 CGATACATTGTAT
1 CGATACATTGTAT
1060782 CGATACA
1 CGATACA
1060789 ACACTTATGT
Statistics
Matches: 33, Mismatches: 0, Indels: 12
0.73 0.00 0.27
Matches are distributed among these distances:
13 17 0.52
15 2 0.06
16 2 0.06
17 2 0.06
19 10 0.30
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (13 bp):
CGATACATTGTAT
Found at i:1060769 original size:19 final size:18
Alignment explanation
Indices: 1060745--1060807 Score: 73
Period size: 19 Copynumber: 3.7 Consensus size: 18
1060735 AGCGATACAT
1060745 TGTATCGATACAAAACTTA
1 TGTATCGATAC-AAACTTA
1060764 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
1060777 TGTATCGATACAACACTTA
1 TGTATCGATACAA-ACTTA
1060796 TGTATCGATACA
1 TGTATCGATACA
1060808 GTTATGGTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 11 0.29
14 1 0.03
16 2 0.05
18 1 0.03
19 23 0.61
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:1060778 original size:32 final size:32
Alignment explanation
Indices: 1060737--1060807 Score: 133
Period size: 32 Copynumber: 2.2 Consensus size: 32
1060727 AGCTTCGTAG
1060737 CGATACATTGTATCGATACAAAACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
*
1060769 CGATACATTGTATCGATACAACACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
1060801 CGATACA
1 CGATACA
1060808 GTTATGGTTT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.37, C:0.18, G:0.13, T:0.32
Consensus pattern (32 bp):
CGATACATTGTATCGATACAAAACTTATGTAT
Found at i:1061896 original size:17 final size:17
Alignment explanation
Indices: 1061874--1061907 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
1061864 GCAGATCTAT
1061874 TCTATCGAGTTATTTGA
1 TCTATCGAGTTATTTGA
*
1061891 TCTATCGGGTTATTTGA
1 TCTATCGAGTTATTTGA
1061908 AGATGCAAGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.21, C:0.12, G:0.21, T:0.47
Consensus pattern (17 bp):
TCTATCGAGTTATTTGA
Found at i:1064146 original size:20 final size:21
Alignment explanation
Indices: 1064117--1064169 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 21
1064107 ATCGATACAT
* **
1064117 TGTATTGATACATGACCA-AA
1 TGTATCGATACATGAAAAGAA
*
1064137 TGTATCGATACTTGAAAAGAA
1 TGTATCGATACATGAAAAGAA
1064158 TGTATCGATACA
1 TGTATCGATACA
1064170 GGTCATTGGC
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
20 14 0.52
21 13 0.48
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.30
Consensus pattern (21 bp):
TGTATCGATACATGAAAAGAA
Found at i:1064216 original size:19 final size:19
Alignment explanation
Indices: 1064192--1064254 Score: 75
Period size: 19 Copynumber: 3.6 Consensus size: 19
1064182 TAGCCAAATT
1064192 TGTATCGATACACACAATA
1 TGTATCGATACACACAATA
1064211 TGTATCGAT----AC-AT-
1 TGTATCGATACACACAATA
*
1064224 TATATCGATACACACAATA
1 TGTATCGATACACACAATA
1064243 TGTATCGATACA
1 TGTATCGATACA
1064255 TTGTATCGAT
Statistics
Matches: 36, Mismatches: 2, Indels: 12
0.72 0.04 0.24
Matches are distributed among these distances:
13 8 0.22
14 2 0.06
15 2 0.06
17 2 0.06
18 2 0.06
19 20 0.56
ACGTcount: A:0.40, C:0.19, G:0.11, T:0.30
Consensus pattern (19 bp):
TGTATCGATACACACAATA
Found at i:1064235 original size:32 final size:32
Alignment explanation
Indices: 1064194--1064289 Score: 156
Period size: 32 Copynumber: 3.0 Consensus size: 32
1064184 GCCAAATTTG
1064194 TATCGATACACACAATATGTATCGATACATTA
1 TATCGATACACACAATATGTATCGATACATTA
*
1064226 TATCGATACACACAATATGTATCGATACATTG
1 TATCGATACACACAATATGTATCGATACATTA
* *
1064258 TATCGATACATCCCAAAATGTATCGATACATT
1 TATCGATACA-CACAATATGTATCGATACATT
1064290 GGCTTGTAAC
Statistics
Matches: 60, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
32 41 0.68
33 19 0.32
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (32 bp):
TATCGATACACACAATATGTATCGATACATTA
Found at i:1064261 original size:13 final size:13
Alignment explanation
Indices: 1064211--1064268 Score: 53
Period size: 13 Copynumber: 4.0 Consensus size: 13
1064201 ACACACAATA
1064211 TGTATCGATACAT
1 TGTATCGATACAT
*
1064224 TATATCGATACACACAAT
1 TGTATCGAT----AC-AT
1064242 ATGTATCGATACAT
1 -TGTATCGATACAT
1064256 TGTATCGATACAT
1 TGTATCGATACAT
1064269 CCCAAAATGT
Statistics
Matches: 37, Mismatches: 2, Indels: 12
0.73 0.04 0.24
Matches are distributed among these distances:
13 21 0.57
14 2 0.05
15 2 0.05
17 2 0.05
18 2 0.05
19 8 0.22
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.34
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1070414 original size:13 final size:13
Alignment explanation
Indices: 1070396--1070420 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1070386 AAAACTCAGA
1070396 TGTATCGATACAG
1 TGTATCGATACAG
1070409 TGTATCGATACA
1 TGTATCGATACA
1070421 AGGGGTTTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:1070587 original size:20 final size:20
Alignment explanation
Indices: 1070552--1070592 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 20
1070542 CAAATTTCTT
1070552 GTTTTTCACTTCAAAATACATC
1 GTTTTTCAC-TCAAAAT-CATC
1070574 GTTTTTCA-TCAAAATCATC
1 GTTTTTCACTCAAAATCATC
1070593 AACAAAAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.21
20 7 0.37
22 8 0.42
ACGTcount: A:0.32, C:0.22, G:0.05, T:0.41
Consensus pattern (20 bp):
GTTTTTCACTCAAAATCATC
Found at i:1072897 original size:13 final size:13
Alignment explanation
Indices: 1072879--1072903 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1072869 AGATTGCACA
1072879 GTATCGATACATT
1 GTATCGATACATT
1072892 GTATCGATACAT
1 GTATCGATACAT
1072904 GACCAAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:1072916 original size:20 final size:21
Alignment explanation
Indices: 1072891--1072943 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 21
1072881 ATCGATACAT
**
1072891 TGTATCGATACATGACCA-AA
1 TGTATCGATACATGAAAAGAA
* *
1072911 TGTATCAATACTTGAAAAGAA
1 TGTATCGATACATGAAAAGAA
1072932 TGTATCGATACA
1 TGTATCGATACA
1072944 GGTCATTGGC
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
20 14 0.54
21 12 0.46
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.28
Consensus pattern (21 bp):
TGTATCGATACATGAAAAGAA
Found at i:1073019 original size:20 final size:20
Alignment explanation
Indices: 1072976--1073027 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
1072966 TAGCCAAATT
*
1072976 TGTATCGATACA-CACAATA
1 TGTATCGATACATCACAAAA
*
1072995 TGTATCGATACATCCCAAAA
1 TGTATCGATACATCACAAAA
1073015 TGTATCGATACAT
1 TGTATCGATACAT
1073028 TGGCTTGTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 12 0.40
20 18 0.60
ACGTcount: A:0.38, C:0.21, G:0.12, T:0.29
Consensus pattern (20 bp):
TGTATCGATACATCACAAAA
Found at i:1075248 original size:476 final size:475
Alignment explanation
Indices: 1073772--1077912 Score: 4793
Period size: 476 Copynumber: 8.7 Consensus size: 475
1073762 TGAGCTTTCA
* *
1073772 TTATTTAAGGGATGAACTTTGATTTTAAGGAATATAAGGCAAAGAAAATATTTCCATGCAAAAGA
1 TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGA
* *
1073837 AAATCGTCAATATCATTTATCCTAATGAGGACAATGTGTTTGTAGTGCCTAATCACAAAATGAAT
66 AAATCGTCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
* * * * * *
1073902 GATGATAATTACTAGAATCCATGTTTGTCTTATTTGAGGCATGAACTTAAACGTTACAAAAATTA
131 GAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAATTG
* * *
1073967 GTGGGAAGAAAGCCTTTCTAGTGAAACAAAAGCATCAATATCGTGTATCCTAATGAGAAGACTAG
196 GTGGGAA-AAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTAT
* * * * *
1074032 GTTTATGGTTCCTAATCTTGAAAAGAACAGGGATTAGTATAAGTATTAATGTTTGTCATATTTAA
260 GTTTATGGTGCCTAATCCTGAAAAGAACGGGGATTAGTATAAGTATTCATGTTTGTCTTATTTAA
* * *
1074097 GAGACAAACTTTGCTTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATC
325 GAGACAAACTTTGATTCTATAAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
* * * * *
1074162 AATGTCAAGTATCCTATTGAAGGGAATGTGTTTTGGTTTCCCAATCTTGAAAAGAATGGACATTG
390 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTG
* * *
1074227 TTACCAAAATCGATGGTTGTC
455 TTACGAGAATCGATGCTTGTC
** * * * * ***
1074248 TTATTTGTGGTATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAATATTTCTATGCATGTGA
1 TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGA
* * * * * * * * *
1074313 AAATCATCAATATCATTTTTCCTCACGAGGAGAATATGATTATAGTCCCTGATCACAAAATAAAT
66 AAATCGTCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
* * * *
1074378 GAAGATCCTTACTAGAATCTATGTTTGTCTCATTTAAGGCACGAAC-TAGACTTTACAAAAATTG
131 GAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAATTG
* * * * *
1074442 GTAGGGAGAAAGCCTATCTTGTGAAA-CAAAGCATCAGTATCGCGTATCCTAATGAGAAGACAAT
196 GT-GGGAAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTAT
* *
1074506 GTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATAACTATTCATGTTTGTCTTATTTAA
260 GTTTATGGTGCCTAATCCTGAAAAGAACGGGGATTAGTATAAGTATTCATGTTTGTCTTATTTAA
* * *
1074571 GAGACAAACTTT-ATTCTATCAAAAAC-GTGGAAAGAAAAGCTTTTCTTGTGAC-CCAAAGCACC
325 GAGACAAACTTTGATTCTATAAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
* * * * * * *
1074633 ATTGTCATGTATCCTAATGAAGGGAATGTCTTTTAGCTTCCAAATCTAGAAAAGAGTGGAGATTG
390 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTG
* * ** *
1074698 TAACAAGAATAAATGCTCGTC
455 TTACGAGAATCGATGCTTGTC
* * * * *
1074719 TTATTTAAGGAATTAACTTTGATTTAAAGGGAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
1 TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGA
* * * *
1074784 AAATTGTCAATATCATTTATCCGAATGAGGAGAATGTGTTTATAGTGCCTAATTACAAAATAAAT
66 AAATCGTCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
* * * **
1074849 GAAGATCATTACTGGAATCAATGTTTGTCTTATTTGAGGTATAAACTTAGACTTTACAAAAATTG
131 GAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAATTG
* * * * *
1074914 GTGAGAAAAATGCCTTTCTGGCGAAACAAAAGCATCAATATCGTGTATCCTAATGAGAAGACAAT
196 GTGGGAAAAA-GCCTTTCTTGTGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTAT
* * * * * * *
1074979 GTTTATGGTGCCTAATCCTGAAATGAACGAGGATTAGCATGAGTATTCATGTCTATTTTATTTAA
260 GTTTATGGTGCCTAATCCTGAAAAGAACGGGGATTAGTATAAGTATTCATGTTTGTCTTATTTAA
* * ** * *
1075044 GAGACAAACTTTGATTCAATAAAAAAGGGCAGAAAAAAAAGCTTTTCTTGCGACACCAAAGCAAC
325 GAGACAAACTTTGATTCTATAAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
* * * * * *
1075109 AATGTCATGTATCCTAACGAAGGGAATGTGTATTGGCTTCCCAATCTAGAAAAGAGTGAATACTG
390 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTG
* *
1075174 TTATGAGAATCGATGCTTATC
455 TTACGAGAATCGATGCTTGTC
*
1075195 TTATTTAAGGGATGAACTTTGATTTT-AGGAAATATAAGGCAAAGAGAAGATTTCCATGCAAAAG
1 TTATTTAAGGGATGAACTTTGATTTTAAGGAAA-ATAAGGCAAAGAAAAGATTTCCATGCAAAAG
* * * *
1075259 AAAATCGTCGATATCATTTATCCTAAGGAGGACAGTGT-TTATATAGTGCCTAA-CAACAAAATG
65 AAAATCGTCAATATCATTTATCCTAATGAGGAGAATGTGTT-TATAGTGCCTAATC-ACAAAATG
*
1075322 AATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACAAACTTAGACTTTACAAAAA
128 AATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAA
* * * * * *
1075387 CTGGGGGGGAAAATGCCTTTCTTGCGAAACCAAAGCATCAATAT-GATGTATCCTAATAAAAAGA
193 -TTGGTGGGAAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCG-TGTATCCTAATGAGAAGA
* * * ** * *
1075451 CTATGTTTGTGGTGCGTAACCCT-AAGAAGAATAGGGATTAGTAAAAGTATTCATGTTTGTCATA
256 CTATGTTTATGGTGCCTAATCCTGAA-AAGAACGGGGATTAGTATAAGTATTCATGTTTGTCTTA
* * * * *
1075515 TTTAAAAGATAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTGCTTGCGACACCAAA
320 TTTAAGAGACAAACTTTGATTCTATAAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAA
* * *
1075580 GCATCAATGTCATATATCCTAATG-AGCGGAATGTGTTTTTGGCTT-CCAGTCTTGAAAAGAATA
385 GCATCAATGTCATGTATCCTAATGAAG-GGAATGTG-TTTTGGCTTCCCAATCTTGAAAAGAATG
* *
1075643 GAGACTGTTACGAGAATCAATGCTTATC
448 GAGACTGTTACGAGAATCGATGCTTGTC
** ** * *
1075671 TTATTTATTGTTTGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCAAGCAAAAGA
1 TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGA
* * *** *
1075736 AAATCATCAATATCATTTTTCCTTGCGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAAT
66 AAATCGTCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
* * *
1075801 GAAGATCATTACTACAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTATAAAAATTG
131 GAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAATTG
* * ** * * *
1075866 GTGGGAAGAAAACCTTTCCTGCAAAACCAAAGCATCAGTATCATGTATCCTAATGAGAAGACAAT
196 GTGGGAA-AAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTAT
** * * * * **
1075931 GTTTATTATGCCTAATCCTGAAAAGAATGGGGATTATTTTAACTATTCATGTTCATCTTATTTAA
260 GTTTATGGTGCCTAATCCTGAAAAGAACGGGGATTAGTATAAGTATTCATGTTTGTCTTATTTAA
* ** * *
1075996 GAGACGAACTTTGATTCTATAAAAAACAATGGAAAGAAAAGCTTTTCTTGCGACCCCAAAGCGTC
325 GAGACAAACTTTGATTCTATAAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
* * * * * * * * *
1076061 ACTATCATGCATCCTAATGAAGGAAAGGTGTTTTAGCTTCCAAATCTTCAAAAGAATGGAAACTG
390 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTG
* **
1076126 TTACAAGAAGAGATGCTTGTC
455 TTACGAGAATCGATGCTTGTC
* * * * * * *
1076147 TTATTTAAGGTATTAACTATGATTTAAAGGAAAATAAGGCAAAGAATAGATTTTCATGTAAAA-A
1 TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGA
1076211 AAATCGTCAATATCATTTATCCT-ATAGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
66 AAATCGTCAATATCATTTATCCTAAT-GAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * * * *
1076275 TGAAGATCATTACTAGAATCCATGTTTGTCTTATTTAAAGCACAAACCTAGACTTTACGAAAATT
130 TGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAATT
**
1076340 GGTGGGAAAAATGCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTA
195 GGTGGGAAAAA-GCCTTTCTTGTGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTA
* * * * *
1076405 TGTTTATGGTACCTAATCCT-AAAACGAAGGGGGATTAGTATGAGTATTCATGTTCGTCATATTT
259 TGTTTATGGTGCCTAATCCTGAAAA-GAACGGGGATTAGTATAAGTATTCATGTTTGTCTTATTT
* * * * * * ** *
1076469 AAGAAACAAAATTTGATTTTATCATAAGCGGTGGAAACTAAAGCTTTTCTTACGACACCAAAGCA
323 AAGAGACAAACTTTGATTCTATAAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
* * * ** * * ** *
1076534 ACAATGTCAAGAATCCTAACAAACGAAATGTGTTTTGGCTTCCCCTTCTTGAAAAGAATGCAGAC
388 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGAC
* * *
1076599 TATTATGAGAATCGATGCTTTTC
453 TGTTACGAGAATCGATGCTTGTC
* * * * *
1076622 TTATTTAAGGGATGAACTTTGATTTTAAGGAATATAAGTCAAAAAAAAGATTTTCATGCAGAAGA
1 TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGA
* * * *
1076687 AAATCGTCAATATCATTTATCCTAATGAGGACAATGTATTTATAGTGCCTAACCACCAAATGAAT
66 AAATCGTCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
** * * * * *
1076752 GAAGATTGTTACTATAATCCATGTTTATC-TATTTTGAGGCATGAACTTAGTCGTTACAAAAATT
131 GAAGATCATTACTAGAATCCATGTTTGTCTTA-TTTGAGGCACGAACTTAGACTTTACAAAAATT
* * * * *
1076816 GGCGGGAAAAAAGCTTTTCTTGTGAAAGCAAAGCATCAATATAGTGTATCCTAATGAGAAGAGTA
195 GGTGGG-AAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTA
* * * **
1076881 TGTTTATGGTGCCTAATCTTAAAAAGAATGGGGATTAGTATAAGTATAAATGTTTGTCTTATTTA
259 TGTTTATGGTGCCTAATCCTGAAAAGAACGGGGATTAGTATAAGTATTCATGTTTGTCTTATTTA
* * * * * * * **
1076946 AGAGGCAAACTTCGCTTCTATCAAATACCGTAGAAAGGGAAGCTTTTCTTGC-AGCACCAAAGCA
324 AGAGACAAACTTTGATTCTATAAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGA-CACCAAAGCA
* * * * * * *
1077010 TTAAAGTCATGTATCCTAATGAAAGGAATGTGCTTCGGTTTCCCTATCTTGAAAAGAATGGAGAC
388 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGAC
* **
1077075 TGTTACCAGAATTAATGCTTGTC
453 TGTTACGAGAATCGATGCTTGTC
* * *
1077098 TTATTTAAGGGATGAA-TTATGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGTAAAAG
1 TTATTTAAGGGATGAACTT-TGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAG
* * *
1077162 AAAATCGTCAATATCATTTATCCTACTGAGGAGAATATGTTTATAATGCCTAATCACAAAATGAA
65 AAAATCGTCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * * * * *
1077227 TGAAAATCATTACAAGAACCCATGTTTGTCTCATTTGAGGCATGAACATAGACTTTACAAAAATT
130 TGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAATT
* * ** * *
1077292 GGTAGGAAGAAAGCCTTTCTTATGAAACCAAAGCATCAATATCAAGTAACCCAATGAGAAGACTA
195 GGTGGGAA-AAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTA
* * * ** * * * **
1077357 TGTTTATGGTTCATAATCCTGAAAAAAATAGCGATTAGTATGACTATTTGTGTTTGTCTTATTTA
259 TGTTTATGGTGCCTAATCCTGAAAAGAACGGGGATTAGTATAAGTATTCATGTTTGTCTTATTTA
* * * * * **
1077422 AGGGACAAACTTTTATTCTATGAAAAATGATGGAAAGAAAAGCTTTTCTTATGACACCAAAGCAT
324 AGAGACAAACTTTGATTCTATAAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAT
* * * *
1077487 CAATGTCATGTTTCGTAATGAAGGGAATGCGTTTTGGCTTCCTAATCTTGAAAAGAATGGAGACT
389 CAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACT
* *
1077552 ATTACGAGAATCGATGCTTGAC
454 GTTACGAGAATCGATGCTTGTC
* * * *
1077574 TTACTTAAGGGAT--ACTTTGATTTTAAGGAAAAT-AGAGTAAAGAAAAGATTTCCAAGCAAAAT
1 TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAG-GCAAAGAAAAGATTTCCATGCAAAAG
* * * * * *
1077636 AAAATCATCAATATCATTTTTCCTAAAGAGGAGAATGTTTTTATAGTTCCTAATCACAAAAAGAA
65 AAAATCGTCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * * * *
1077701 TGAAGATCATTACTAGAATCCATGTTTGCCTCATTTTAGGCACAAACTTAGACTTTATAAAAATT
130 TGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAATT
* * **
1077766 AGTGGGAAAAAAGCTTTTCTTGTGAAACCAAAGCATCAATAT-GATACATCCTAATGAGAAGACT
195 GGTGGG-AAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCG-TGTATCCTAATGAGAAGACT
* * *** * *
1077830 ATATTTATGCTATGTAATCCTGAAAAGAGCGGGGATTAGTATGAA-TATTAATGTTTGTCTTATT
258 ATGTTTATGGTGCCTAATCCTGAAAAGAACGGGGATTAGTAT-AAGTATTCATGTTTGTCTTATT
* *
1077894 TGAAG-TATAAACTTTGATT
322 T-AAGAGACAAACTTTGATT
1077913 TTAAGGAAAA
Statistics
Matches: 3070, Mismatches: 553, Indels: 86
0.83 0.15 0.02
Matches are distributed among these distances:
471 230 0.07
472 58 0.02
473 117 0.04
474 382 0.12
475 487 0.16
476 1753 0.57
477 43 0.01
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (475 bp):
TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGA
AAATCGTCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
GAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAATTG
GTGGGAAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATG
TTTATGGTGCCTAATCCTGAAAAGAACGGGGATTAGTATAAGTATTCATGTTTGTCTTATTTAAG
AGACAAACTTTGATTCTATAAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCA
ATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGT
TACGAGAATCGATGCTTGTC
Found at i:1079126 original size:477 final size:470
Alignment explanation
Indices: 1077884--1082035 Score: 3094
Period size: 475 Copynumber: 8.7 Consensus size: 470
1077874 ATATTAATGT
* * * * * *
1077884 TTGTCTTATTTGAA-GTATAAACTTTGATTTTAAGGAAAATAGGGCAAAAAAAATATTTTCACA-
1 TTGTCTTATTT-AAGGGATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTACA-AG
* * * * * *
1077947 CAAAAAAAATCATCAATATCGTTTTTCCTAATGAGGAGAATATGTTTACAGTGCCTAATCATAGA
64 CAAAAAAAATCATCAATATCATTTATCCTAATGAAGAGAATGTGTTTACAGTGCCTAATCACAAA
* * *
1078012 ATGAATGAAGATCATTGCTAGAATCCATGTTTGTCTCATTTAAGCCACGAACTTAGACTTTACAA
129 ATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCA-TTGAGGCACGAACTTAGACTTTACAA
* *
1078077 AAATTGGTGGGAAGAAAGCC--AC--GG--------A-CAGTATCGTGTATCCTAATGA-AAAGA
193 AAATTGGTGGGAAGAAAGCCTTTCTTGGAAACAAACATCAATATCGTGTATCCTAATGAGAAA-A
* * * * * *
1078128 -TAATGTTTATGGTCCCTAATCCTAAAAGAATCGAGATTAGTCTGACTATTCATGCTTGTTTTAT
257 CT-ATGTTTATGGTGCCTAATCCTAAAAGAATGGAGATTAGTATGACTATTCATGTTTGTCTTAG
* * *
1078192 TTAAGAGACAAACTTTGATTCTATCAAAAACT-GCAGAAAGAAAAGCTTTTCTTGCGACACCAAA
321 ATAAGAGACAAACTTTGATTCTATCAAAAAATAGAAG-AAGAAAAGCTTTTCTTGCGACACCAAA
** **
1078256 GCATCAATGTCATGTATCCTAATGAAGGGAATGCATTTTGGCTTCCTTATCTTGAAAAAAAT-GA
385 GCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAAAATAG-
*
1078320 AGAC-AGCT-CTGAGAATCGATGC
449 AGACTA-TTAC-GAGAATCGATGC
* * * * * * ** *
1078342 TTGTTTTATTGAAGGGATGAATTTTGGTTTTAAGAAAAGTAAGGCAAA-AAATAGATTTTTATGC
1 TTGTCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAA-AGATTTACAAGC
* * * *
1078406 AAAGGAAAATCATCAATATCATTTATCTTAATGAAGAGAATGTTTTTACAGTGCCTAATCAGAAA
65 AAA-AAAAATCATCAATATCATTTATCCTAATGAAGAGAATGTGTTTACAGTGCCTAATCACAAA
* * * * *
1078471 AAGAATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGTAGGAACTTAGACGTTACAA
129 ATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCA-TTGAGGCACGAACTTAGACTTTACAA
* * * * *
1078536 AAATTAGTGAGAA-AAATGCCTTCCTTGCAAAATCAAAGCATCAATATCATGTATCCTAATGAGA
193 AAATTGGTGGGAAGAAA-GCCTTTCTTG-GAAA-CAAA-CATCAATATCGTGTATCCTAATGAGA
* ** * *
1078600 AGACTATGTTTATGGCACTTAATCCTCAAAAGAATGGAGATTAGTATGACTATTCATGTTTATCT
254 AAACTATGTTTATGGTGCCTAATCCT-AAAAGAATGGAGATTAGTATGACTATTCATGTTTGTCT
* * * * * ** *
1078665 TATATAAAAGACAAACTTTGATTTTTTTAAAAAATAGTGGAAGTAAAAGCTTTTCTTGCAACACC
318 TAGATAAGAGACAAACTTTGATTCTATCAAAAAATAGAAGAAG-AAAAGCTTTTCTTGCGACACC
* * * * * *
1078730 AAAGGATCAATGCCATGTATCCTAATGAAGGGAGTGTGTTTTGGGTTCCCAATCTTGAAAAGATT
382 AAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAAAAT
*
1078795 AGAGACTATTACTAGAATCGATGC
447 AGAGACTATTACGAGAATCGATGC
* * ** * * *
1078819 TTGTCTTGTTTAAGGGATTAACTTCAATTTTACGAAAAATAGGGTAAAGGAAAGATTTACAAGCA
1 TTGTCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTACAAGCA
* * *
1078884 AAATAAAATCATCAATATCATTTATCCTAATGAAGAGAGTGTGTTTGCATTGCCTAATCACAAAA
66 AAA-AAAATCATCAATATCATTTATCCTAATGAAGAGAATGTGTTTACAGTGCCTAATCACAAAA
* * * *
1078949 TGAATGAAGATCGTTACTAGAATCCATGTTTGTCTCATTCGAAGCATGAACTTAGATTTTACAAA
130 TGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATT-GAGGCACGAACTTAGACTTTACAAA
* *
1079014 AACTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCGTCAATATCGTGTATCCTAATGAGAAA
194 AATTGGTGGGAAGAAAGCCTTTCTTG-GAAA-CAAA-CATCAATATCGTGTATCCTAATGAGAAA
* * *
1079079 ACTATGTTTACGGTGCCTAGTCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTA
256 ACTATGTTTATGGTGCCTAATCCT-AAAAGAATGGAGATTAGTATGACTATTCATGTTTGTCTTA
* * *
1079144 GATAAGAGACAAACTTTGATTCTATC-AAAAACAGCAGAAGAAAAGCTTTTCTTGTGACACCAAA
320 GATAAGAGACAAACTTTGATTCTATCAAAAAATAGAAGAAGAAAAGCTTTTCTTGCGACACCAAA
* * ** * * *
1079208 GCATCAATGTCATGTATCCTACTTAAGCCAATGTGTTTTGCCTTCCCAATCTAGAAAAAAGTAGA
385 GCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAAAATAGA
* * *
1079273 CACTTTTACGAGAATCAATGC
450 GACTATTACGAGAATCGATGC
* * * * *
1079294 TTATCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGGAAAA-TTTTACATGA
1 TTGTCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGGCAAA-GAAAAGATTTACAAGC
* * * *
1079358 AAAAGAAAATCATCAATATCTTTTATCCTAATGAAGATAATGTGTTTATAGTGCCTAATCCCAAA
65 AAAA-AAAATCATCAATATCATTTATCCTAATGAAGAGAATGTGTTTACAGTGCCTAATCACAAA
* * *
1079423 ATGAATGAATATCGTTACTAGAATCCATGTTTGTCTCATTCGAGGCATGAACTTAGACTTTACAA
129 ATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATT-GAGGCACGAACTTAGACTTTACAA
* * * *
1079488 AAATTGGTAGGAAGAAA----------G---C---C-TCAATATCGTGCATCCTATTGAGAAGAC
193 AAATTGGTGGGAAGAAAGCCTTTCTTGGAAACAAACATCAATATCGTGTATCCTAATGAGAAAAC
* * *
1079536 TATGTTTATGGTGCCTAGTCTTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTAGA
258 TATGTTTATGGTGCCTAATCCT-AAAAGAATGGAGATTAGTATGACTATTCATGTTTGTCTTAGA
** *
1079601 TAAGAGACAAACTTTGATTCTATCAAAAACGA-AAGAAATAAAAGCTTTTCTTGCGACACCAAAG
322 TAAGAGACAAACTTTGATTCTATCAAAAAATAGAAG-AAGAAAAGCTTTTCTTGCGACACCAAAG
* * * * *
1079665 CATCAATGTCATGTATACTAGA-GAAGTGAATGTGTTTTTGG-TTCCCAATCTTGCAAAGAATGG
386 CATCAATGTCATGTATCCTA-ATGAAGGGAATGTG-TTTTGGCTTCCCAATCTTGAAAAAAATAG
1079728 AGACTATTACGAGAATCGATGC
449 AGACTATTACGAGAATCGATGC
* * * * *
1079750 TTGGCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCCAAAAAAAAGATTT-CCAGC
1 TTGTCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGG-CAAAGAAAAGATTTACAAGC
* * * * * *
1079814 GGAAAAAAGAAGCATTAATATTAGTTATCCTAAT-AAGGAGAATGTATTTATAGTGCCTAATCAC
65 --AAAAAA-AATCATCAATATCATTTATCCTAATGAA-GAGAATGTGTTTACAGTGCCTAATCAC
* * * ** * *
1079878 AAAATGAGT-AAGATCACTAGTAGAATCCATGTTCATCTTATTTATGGCACGAACTTAGACTTTA
126 AAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTGA-GGCACGAACTTAGACTTTA
* * *
1079942 CAAAAACTGGTGGGAA-AAATGGCTTTCTTTGCAAAACCAAAACATCAATATCGTGTATCTTACA
190 CAAAAATTGGTGGGAAGAAA-GCCTTTC-TTG-GAAA-C-AAACATCAATATC--G-----T---
*
1080006 AGACCAAAACATCAATATCATGTATCTTAATGAGAAAACTATGTTTATGGTGCCTAATCTTGAAA
240 -G-------------TATC------C-TAATGAGAAAACTATGTTTATGGTGCCTAATCCT-AAA
* * ** * * *** * * * *
1080071 AGAATAGGGATTAGGGTGCCTA---AT-CTTG-AAAAGAATGAGGATTACTATTACTATTCATTT
283 AGAATGGAGATTAGTATGACTATTCATGTTTGTCTTAG-AT-AAGA-GAC-A-AACT-TTGA-TT
* * ** ** * * * ** * **
1080131 TTGTC-TTATTTA-AGGGACAAACTTTTCTTCTATCAACAATAATG-GAAAAAAAAGCTTTTCTT
341 CTATCAAAAAATAGAAGAAGAAA---AGCTT-T-T---C--T--TGCGACACCAAA---------
* * *
1080193 GCAACACCAAAGCATCAATGTTATGCATTCTAATGAAGAGAATGTGTTTTTTGG--TCCCAATCT
385 G---CATCAATG--TC-ATG-TAT-C---CTAATGAAGGGAATGTG--TTTTGGCTTCCCAATCT
* * * * * *
1080256 TGAAAAGAATGGAGATTGTTACGAGAATTGAAGC
437 TGAAAAAAATAGAGACTATTACGAGAATCGATGC
* * * * * * * * * **
1080290 TTTTCTTCTTTGAGGGGTGCACTTTGATTTAAAGGAAAATAGGGTAAAGAAAAGATTTTCGTGCG
1 TTGTCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTACAAGC-
* * * * * * *
1080355 AAAGAAAATCATCAATATCATTTATCCTAAGGAGGAGAATGTGTTTATATTGCCTAATCATAAAT
65 AAAAAAAATCATCAATATCATTTATCCTAATGAAGAGAATGTGTTTACAGTGCCTAATCACAAAA
** * * * * *
1080420 TGAATGAAGATCATTACTAGAATCTTTGTTTATCTTCTTTGAGGCACGGACTTAGACTTTGCGAA
130 TGAATGAAGATCATTACTAGAATCCATGTTTGTC-TCATTGAGGCACGAACTTAGACTTTACAAA
* * * * *
1080485 AATTAGTGGGAA-AAATGCCTTTCTTGCAAATCCAGAGCATCAATATCATGTATCCTAACGAGAA
194 AATTGGTGGGAAGAAA-GCCTTTCTTGGAAA--CA-AACATCAATATCGTGTATCCTAATGAGAA
* * * * *
1080549 GACTGTGTTTATGGTGCATAATCGTGAAAAGAAGTGG-GATTAGTATGACTGTTCATGTTTGTCT
255 AACTATGTTTATGGTGCCTAATCCT-AAAAGAA-TGGAGATTAGTATGACTATTCATGTTTGTCT
* * * * * *
1080613 TATATAA-AGGCAAACTTTAATTCTATCAAAAACGGT-GGA-AAGAAAAGCTTTTCTTGCAACAC
318 TAGATAAGAGACAAACTTTGATTCTATCAAAAA--ATAGAAGAAGAAAAGCTTTTCTTGCGACAC
* * *
1080675 CAAAGCATCAATGTCATATATCCTAAAGAATGGAATGTGTTTTTGG-TTCCCAATCTTGAAAAAA
381 CAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG-TTTTGGCTTCCCAATCTTGAAAAAA
* * *
1080739 ATGGAGACTGTTACGAGAATCAATGC
445 ATAGAGACTATTACGAGAATCGATGC
* * ** * * * *
1080765 TTG-CTTGTTTAAAGGATGAACTTTGATTTTAAGGTAAATAGGGCTAA-AAAATATTTCCATGCG
1 TTGTCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTACAAGC-
* * * * * * *
1080828 AAAGAAAATCAACAATATAATTTATCCTAAAGAGGAGAACGTGTTTATAGTGCCTAATCACAAAA
65 AAAAAAAATCATCAATATCATTTATCCTAATGAAGAGAATGTGTTTACAGTGCCTAATCACAAAA
* * * * * * * * * * *
1080893 TGAGTAAAGATCATTAGTGGAATCCATGTTCGTCTTATTTGTGACATGAACTTAGACTTCACACA
130 TGAATGAAGATCATTACTAGAATCCATGTTTGTCTCA-TTGAGGCACGAACTTAGACTTTACAAA
* * * * * *
1080958 AACTGGTGGGAA-AACTGCCTTACTTGTGAAACCAAAATATCAATATTGTGTATCCTAATTAGAA
194 AATTGGTGGGAAGAA-AGCCTTTCTTG-GAAA-C-AAACATCAATATCGTGTATCCTAATGAGAA
* * * * * *
1081022 GACTTTGTTTATGATGCCTAATCTTGAAAAGAATGGGGATTACTATGACTATTCATGTTTGTCTT
255 AACTATGTTTATGGTGCCTAATCCT-AAAAGAATGGAGATTAGTATGACTATTCATGTTTGTCTT
** * * * * *
1081087 ATTTTAGAGACAAACTTTTATTCTAT-AAAAAAT-GACAGAAAGAAAAGCTTTTCTAGTGACACT
319 AGATAAGAGACAAACTTTGATTCTATCAAAAAATAGA-AG-AAGAAAAGCTTTTCTTGCGACACC
* * * * ** * * *
1081150 AAAGCATTAATGTCATGGATCCTAACGAATGGAACATGTTTTGGCTTCCTAATCTCGAAAAGAAT
382 AAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAAAAT
*
1081215 GGAGA-TAGTTACTG-GAATCGATGC
447 AGAGACTA-TTAC-GAGAATCGATGC
** * ** *
1081239 TTGTCTTATTTAAGGGATGAGTTTTGATTTTAAGAAAAATAAGGCAAAGAAAAGATTTTTATGCA
1 TTGTCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTACAAGCA
* * * * ** *
1081304 AATGAAAATCATCAATATAATTTATCCGAATG-AGAAAAATGTGTTTATTGTGCCTAATCATAAA
66 AA-AAAAATCATCAATATCATTTATCCTAATGAAG-AGAATGTGTTTACAGTGCCTAATCACAAA
* * *
1081368 ATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCCCTTGAGGCATGAACTTAGACTTTACAA
129 ATGAATGAAGATCATTACTAGAATCCATGTTTGTCT-CATTGAGGCACGAACTTAGACTTTACAA
* *
1081433 AAATTGGTGAGAA-AAATGCCTTTCTTGCAAATCTAAAGCATCAATATCGTGTATCCTAATGAGA
193 AAATTGGTGGGAAGAAA-GCCTTTCTTGGAAA-C-AAA-CATCAATATCGTGTATCCTAATGAGA
* * * * * *
1081497 AGACTATATTTTTGGCAG-GTAATCCTGAAAAGAATAGG-CATTAGTATGACTATTCATGTTTGT
254 AAACTATGTTTATGG-TGCCTAATCCT-AAAAGAAT-GGAGATTAGTATGACTATTCATGTTTGT
* * * * *
1081560 CTTATATAAGTGACAAACTTTAATTCTATCAAAAACGAT-GGA-AAGAAAAGCTTTTCTTGTGA-
316 CTTAGATAAGAGACAAACTTTGATTCTATCAAAAA--ATAGAAGAAGAAAAGCTTTTCTTGCGAC
*
1081622 ACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTATTTGTGG-TTCCCAATCTT-AAAA
379 ACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTT-TGGCTTCCCAATCTTGAAAA
* * *
1081685 AGAATGGAGACTGTTA-GCAAAATCGATGC
443 A-AATAGAGACTATTACG-AGAATCGATGC
* * *
1081714 TTATCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAAGGCGAAGAAAAGATTT-CAATGC
1 TTGTCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTACAA-GC
* *
1081778 AAAACAAAAATCATAAATATCATTTATCCTAAT-AAGGAGAATGTGTTTATAGTGCCTAATCACA
65 -AAA-AAAAATCATCAATATCATTTATCCTAATGAA-GAGAATGTGTTTACAGTGCCTAATCACA
* * * * *
1081842 AAATGAGTAAAGATCATTAGTAGAATCAATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTAC
127 AAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCA-TTGAGGCACGAACTTAGACTTTAC
* * * * *
1081907 AAAAATTAGTAGGAA-AAATGCCTTT-TCTGTGAAACCAAAAAATTAATATCATGTATCCTAATG
191 AAAAATTGGTGGGAAGAAA-GCCTTTCT-TG-GAAA-C-AAACATCAATATCGTGTATCCTAATG
* * * * * *
1081970 AGAAGACTATGTTTATGGTGCCTAATCTTTTGAAAATAATGGTGATTAGTATGAGTATTCTTGTT
251 AGAAAACTATGTTTATGGTGCCTAATC--CT-AAAAGAATGGAGATTAGTATGACTATTCATGTT
1082035 T
313 T
1082036 CTCTAATTTA
Statistics
Matches: 2967, Mismatches: 530, Indels: 374
0.77 0.14 0.10
Matches are distributed among these distances:
455 113 0.04
456 147 0.05
457 79 0.03
458 106 0.04
459 123 0.04
460 1 0.00
461 1 0.00
463 1 0.00
464 1 0.00
471 2 0.00
472 5 0.00
473 235 0.08
474 159 0.05
475 537 0.18
476 515 0.17
477 398 0.13
478 47 0.02
479 6 0.00
480 3 0.00
481 2 0.00
483 6 0.00
485 1 0.00
486 1 0.00
489 1 0.00
494 2 0.00
495 5 0.00
496 1 0.00
498 1 0.00
501 1 0.00
502 4 0.00
503 3 0.00
504 7 0.00
505 9 0.00
506 12 0.00
507 51 0.02
508 6 0.00
509 61 0.02
510 10 0.00
511 10 0.00
512 4 0.00
513 1 0.00
514 5 0.00
517 1 0.00
519 1 0.00
520 6 0.00
521 2 0.00
527 1 0.00
529 1 0.00
531 1 0.00
532 6 0.00
534 2 0.00
535 3 0.00
536 3 0.00
537 4 0.00
538 67 0.02
539 83 0.03
540 96 0.03
541 7 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.32
Consensus pattern (470 bp):
TTGTCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTACAAGCA
AAAAAAATCATCAATATCATTTATCCTAATGAAGAGAATGTGTTTACAGTGCCTAATCACAAAAT
GAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTGAGGCACGAACTTAGACTTTACAAAAA
TTGGTGGGAAGAAAGCCTTTCTTGGAAACAAACATCAATATCGTGTATCCTAATGAGAAAACTAT
GTTTATGGTGCCTAATCCTAAAAGAATGGAGATTAGTATGACTATTCATGTTTGTCTTAGATAAG
AGACAAACTTTGATTCTATCAAAAAATAGAAGAAGAAAAGCTTTTCTTGCGACACCAAAGCATCA
ATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAAAATAGAGACTAT
TACGAGAATCGATGC
Found at i:1079425 original size:475 final size:474
Alignment explanation
Indices: 1077884--1082066 Score: 2992
Period size: 476 Copynumber: 8.7 Consensus size: 474
1077874 ATATTAATGT
* * * *
1077884 TTGTCTTATTTGAA-GTATAAACTTTGATTTTAAGGAAAATAGGGCAAAAAAAATATTTTCACA-
1 TTGTCTTATTT-AAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTT-ACAT
* * * * * *
1077947 -CAAAA-AAAATCATCAATATCGTTTTTCCTAATGAGGAGAATATGTTTACAGTGCCTAATCATA
64 GCAAAAGAAAATCATCAATATCATTTATCCTAATGAAGAGAATGTGTTTATAGTGCCTAATCACA
* * * *
1078010 GAATGAATGAAGATCATTGCTAGAATCCATGTTTGTCTCATTTAAGCCACGAACTTAGACTTTAC
129 AAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAC
* *
1078075 AAAAATTGGTGGGAAGAAA-GCC--AC--GG--A-C--AG------TATCGTGTATCCTAATGAA
194 AAAAATTGGTGGGAA-AAATGCCTTTCTTGGAAACCAAAGCATCAATATCGTGTATCCTAATGAG
* * * * *
1078124 AAGA-TAATGTTTATGGTCCCTAATCCT-AAAAGAATCGAGATTAGTCTGACTATTCATGCTTGT
258 AAGACT-ATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGT
* * *
1078187 TTTATTTAAGAGACAAACTTTGATTCTATCAAAAACTGCAGAAAGAAAAGCTTTTCTTGCGACAC
322 CTTATATAAGAGACAAACTTTGATTCTATCAAAAACAGCAGAAAGAAAAGCTTTTCTTGCGACAC
** **
1078252 CAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGCATTTTGGCTTCCTTATCTTGAAAAAAA
387 CAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGG-TTCCCAATCTTG-AAAAAA
* * *
1078317 TGAAGACAGCT-CTGAGAATCGATGC
450 TGGAGACTGTTAC-GAGAATCGATGC
* * * * * *
1078342 TTGTTTTATTGAAGGGATGAATTTTGGTTTTAA-GAAAAGTAAGGCAAA-AAATAGATTTT-TAT
1 TTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAA-TAGGGCAAAGAAA-AGATTTTACAT
* * * * *
1078404 GCAAAGGAAAATCATCAATATCATTTATCTTAATGAAGAGAATGTTTTTACAGTGCCTAATCAGA
64 GCAAAAGAAAATCATCAATATCATTTATCCTAATGAAGAGAATGTGTTTATAGTGCCTAATCACA
* * * * *
1078469 AAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGTAGGAACTTAGACGTTAC
129 AAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAC
* * * * * *
1078534 AAAAATTAGTGAGAAAAATGCCTTCCTTGCAAAATCAAAGCATCAATATCATGTATCCTAATGAG
194 AAAAATTGGTGGGAAAAATGCCTTTCTTG-GAAACCAAAGCATCAATATCGTGTATCCTAATGAG
** * * * *
1078599 AAGACTATGTTTATGGCACTTAATCCTCAAAAGAATGGAGATTAGTATGACTATTCATGTTTATC
258 AAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTC
* * * * * * * *
1078664 TTATATAAAAGACAAACTTTGATTTTTTTAAAAAATAG-TGGAAGTAAAAGCTTTTCTTGCAACA
323 TTATATAAGAGACAAACTTTGA-TTCTATCAAAAACAGCAGAAAG-AAAAGCTTTTCTTGCGACA
* * *
1078728 CCAAAGGATCAATGCCATGTATCCTAATGAAGGGAGTGTGTTTTGGGTTCCCAATCTTGAAAAGA
386 CCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTT-GGTTCCCAATCTTGAAAA-A
* * * *
1078793 TTAGAGACTATTACTAGAATCGATGC
449 ATGGAGACTGTTACGAGAATCGATGC
* * ** * * * * *
1078819 TTGTCTTGTTTAAGGGATTAACTTCAATTTTACGAAAAATAGGGTAAAGGAAAGA-TTTACAAGC
1 TTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTACATGC
* * ** *
1078883 AAAATAAAATCATCAATATCATTTATCCTAATGAAGAGAGTGTGTTTGCATTGCCTAATCACAAA
66 AAAAGAAAATCATCAATATCATTTATCCTAATGAAGAGAATGTGTTTATAGTGCCTAATCACAAA
* * * * *
1078948 ATGAATGAAGATCGTTACTAGAATCCATGTTTGTCTCATTCGAAGCATGAACTTAGATTTTACAA
131 ATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAA
* *
1079013 AAACTGGTGGGAAGAAA-GCCTTTCTTGTGAAACCAAAGCGTCAATATCGTGTATCCTAATGAGA
196 AAATTGGTGGGAA-AAATGCCTTTCTTG-GAAACCAAAGCATCAATATCGTGTATCCTAATGAGA
* * * *
1079077 AAACTATGTTTACGGTGCCTAGTCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCT
259 AGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCT
* *
1079142 TAGATAAGAGACAAACTTTGATTCTATCAAAAACAGCAG-AAGAAAAGCTTTTCTTGTGACACCA
324 TATATAAGAGACAAACTTTGATTCTATCAAAAACAGCAGAAAGAAAAGCTTTTCTTGCGACACCA
* * ** * * *
1079206 AAGCATCAATGTCATGTATCCTACTTAAGCCAATGTGTTTTGCCTTCCCAATCTAGAAAAAAGTA
389 AAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTG-GTTCCCAATCTTGAAAAAA-TG
* * *
1079271 GACACTTTTACGAGAATCAATGC
452 GAGACTGTTACGAGAATCGATGC
* * *
1079294 TTATCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGGAAA-ATTTTACATGA
1 TTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTACATGC
* * *
1079358 AAAAGAAAATCATCAATATCTTTTATCCTAATGAAGATAATGTGTTTATAGTGCCTAATCCCAAA
66 AAAAGAAAATCATCAATATCATTTATCCTAATGAAGAGAATGTGTTTATAGTGCCTAATCACAAA
* * * *
1079423 ATGAATGAATATCGTTACTAGAATCCATGTTTGTCTCATTCGAGGCATGAACTTAGACTTTACAA
131 ATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAA
* * * *
1079488 AAATTGGT-------A----------GG-AA-GAAAGCCTCAATATCGTGCATCCTATTGAGAAG
196 AAATTGGTGGGAAAAATGCCTTTCTTGGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAG
* *
1079534 ACTATGTTTATGGTGCCTAGTCTTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTA
261 ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTA
* * *
1079599 GATAAGAGACAAACTTTGATTCTATCAAAAAC-GAAAGAAATAAAAGCTTTTCTTGCGACACCAA
326 TATAAGAGACAAACTTTGATTCTATCAAAAACAG-CAGAAAGAAAAGCTTTTCTTGCGACACCAA
* * *
1079663 AGCATCAATGTCATGTATACTAGA-GAAGTGAATGTGTTTTTGGTTCCCAATCTTGCAAAGAATG
390 AGCATCAATGTCATGTATCCTA-ATGAAGGGAATGTG-TTTTGGTTCCCAATCTTG-AAAAAATG
*
1079727 GAGACTATTACGAGAATCGATGC
452 GAGACTGTTACGAGAATCGATGC
* * * *
1079750 TTGGCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCCAAAAAAAAGA-TTTCCA-G
1 TTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGG-CAAAGAAAAGATTTTACATG
* * * * *
1079813 CGGAAAA-AAGAAGCATTAATATTAGTTATCCTAAT-AAGGAGAATGTATTTATAGTGCCTAATC
65 C--AAAAGAA-AATCATCAATATCATTTATCCTAATGAA-GAGAATGTGTTTATAGTGCCTAATC
* * * ** *
1079876 ACAAAATGAGT-AAGATCACTAGTAGAATCCATGTTCATCTTATTT-ATGGCACGAACTTAGACT
126 ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA-GGCACGAACTTAGACT
* * * * *
1079939 TTACAAAAACTGGTGGGAAAAATGGCTTTCTTTGCAAAACCAAAACATCAATATCGTGTATCTTA
190 TTACAAAAATTGGTGGGAAAAATGCCTTTC-TTG-GAAACCAAAGCATCAATATCGTGTATCCTA
* * * *** ** * * *
1080004 CAAGACCAAAAC-ATCAATATCATG--T-AT-CTTAATGAGAA-----A--ACTATG--T-TT-A
253 -ATGA-GAAGACTATGTTTATGGTGCCTAATCCTGAA-AAGAATGGGGATTAGTATGACTATTCA
* * * * * * * *
1080053 TG-GTGCCTAATCTTGAAAAGA-ATAGGGA-TTAGGGTGCCTAATCTTGAAAAGA-ATG-AGGAT
315 TGTTTGTCTTAT-AT-AAGAGACA-A---ACTT-TGAT-TCT-ATC---AAAA-ACA-GCA-GA-
** ** * ** * ** * * * * *
1080113 TACTATTA-CTATTCATTTTTGTCTTATTTAAGGGA-CAAACTTTTCTTCTATCAACAATAATGG
364 -AAGAAAAGCTTTTC--TTGCGAC--A-CCAAAGCATC-AA--TGTCATGTATC--C--TAAT-G
*** * * *** * * * *** * ** * * * * *
1080176 AAAAAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTTATGCATTCTAATGAAGAGAATGTGTT
415 AAGGGAATG-TGTT-TTGGTTC-CC-AATCTTGAA-AAAATGGAGACT-GTTACGAGAAT-CGAT
**
1080241 TT
473 GC
** * * * * * *****
1080243 TTGGTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATTGAAGCTTTTCTTCTTTGAGGGGT
1 TT-GT-CTTAT-TT--AAGGGAT-GA-ACT-TT----GATTTTAAG------GAAAAT-A--GG-
** * * * *** * * *
1080308 GCACTTTGATTTAAAGGAAAATAGGGTA-AAG-AAAAGATTTTCGTGCGAAAGAAAATCATCAAT
44 GCA--AAGA---AAA-G-AT-T---TTACATGCAAAAGAAAATCAT-C-----AATATCAT--TT
* * * * * *
1080371 ATCATTTATCCTAAGGAGGAGAATGTGTTTATATTGCCTAATCATAAATTGAATGAAGATCATTA
90 ATC--CTA--ATGA--A-GAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
** * * * * *
1080436 CTAGAATCTTTGTTTATCTTC-TTTGAGGCACGGACTTAGACTTTGCGAAAATTAGTGGGAAAAA
148 CTAGAATCCATGTTTGTC-TCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAA
* * * * *
1080500 TGCCTTTCTTGCAAATCCAGAGCATCAATATCATGTATCCTAACGAGAAGACTGTGTTTATGGTG
212 TGCCTTTCTTGGAAA-CCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTG
* * * *
1080565 CATAATCGTGAAAAGAA-GTGGGATTAGTATGACTGTTCATGTTTGTCTTATATAA-AGGCAAAC
276 CCTAATCCTGAAAAGAATG-GGGATTAGTATGACTATTCATGTTTGTCTTATATAAGAGACAAAC
* * ** * *
1080628 TTTAATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATA
340 TTTGATTCTATCAAAAACAGCAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATG
* *
1080693 TATCCTAAAGAATGGAATGTGTTTTTGGTTCCCAATCTTGAAAAAAATGGAGACTGTTACGAGAA
405 TATCCTAATGAAGGGAATGTG-TTTTGGTTCCCAATCTTG-AAAAAATGGAGACTGTTACGAGAA
*
1080758 TCAATGC
468 TCGATGC
* * * * * *
1080765 TTG-CTTGTTTAAAGGATGAACTTTGATTTTAAGGTAAATAGGGCTAA-AAAATA-TTTCCATGC
1 TTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTACATGC
* * * * * *
1080827 GAAAGAAAATCAACAATATAATTTATCCTAAAGAGGAGAACGTGTTTATAGTGCCTAATCACAAA
66 AAAAGAAAATCATCAATATCATTTATCCTAATGAAGAGAATGTGTTTATAGTGCCTAATCACAAA
* * * * * * * * * * *
1080892 ATGAGTAAAGATCATTAGTGGAATCCATGTTCGTCTTATTTGTGACATGAACTTAGACTTCACAC
131 ATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAA
* * * ** * *
1080957 AAACTGGTGGGAAAACTGCCTTACTTGTGAAACCAAAATATCAATATTGTGTATCCTAATTAGAA
196 AAATTGGTGGGAAAAATGCCTTTCTTG-GAAACCAAAGCATCAATATCGTGTATCCTAATGAGAA
* * * *
1081022 GACTTTGTTTATGATGCCTAATCTTGAAAAGAATGGGGATTACTATGACTATTCATGTTTGTCTT
260 GACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTT
* * * * * *
1081087 ATTTTAGAGACAAACTTTTATTCTAT-AAAAA-ATGACAGAAAGAAAAGCTTTTCTAGTGACACT
325 ATATAAGAGACAAACTTTGATTCTATCAAAAACA-G-CAGAAAGAAAAGCTTTTCTTGCGACACC
* * * * ** * *
1081150 AAAGCATTAATGTCATGGATCCTAACGAATGGAACATGTTTTGGCTTCCTAATCTCGAAAAGAAT
388 AAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGG-TTCCCAATCTTGAAAA-AAT
1081215 GGAGA-TAGTTACTG-GAATCGATGC
451 GGAGACT-GTTAC-GAGAATCGATGC
** * * *
1081239 TTGTCTTATTTAAGGGATGAGTTTTGATTTTAAGAAAAATAAGGCAAAGAAAAGATTTT-TATGC
1 TTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTACATGC
* * * * * *
1081303 AAATGAAAATCATCAATATAATTTATCCGAATG-AGAAAAATGTGTTTATTGTGCCTAATCATAA
66 AAAAGAAAATCATCAATATCATTTATCCTAATGAAG-AGAATGTGTTTATAGTGCCTAATCACAA
* ** *
1081367 AATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCCCTTGAGGCATGAACTTAGACTTTACA
130 AATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA
* * *
1081432 AAAATTGGTGAGAAAAATGCCTTTCTTGCAAATCTAAAGCATCAATATCGTGTATCCTAATGAGA
195 AAAATTGGTGGGAAAAATGCCTTTCTTGGAAA-CCAAAGCATCAATATCGTGTATCCTAATGAGA
* * * * * *
1081497 AGACTATATTTTTGGCAG-GTAATCCTGAAAAGAATAGGCATTAGTATGACTATTCATGTTTGTC
259 AGACTATGTTTATGG-TGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTC
* * *
1081561 TTATATAAGTGACAAACTTTAATTCTATCAAAAAC-G-ATGGAAAGAAAAGCTTTTCTTGTGA-A
323 TTATATAAGAGACAAACTTTGATTCTATCAAAAACAGCA--GAAAGAAAAGCTTTTCTTGCGACA
* *
1081623 CCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTATTTGTGGTTCCCAATCTTAAAAAGA
386 CCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTT-TGGTTCCCAATCTTGAAAA-A
*
1081688 ATGGAGACTGTTA-GCAAAATCGATGC
449 ATGGAGACTGTTACG-AGAATCGATGC
* * * * *
1081714 TTATCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAAGGCGAAGAAAAGATTTCA-ATGC
1 TTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTACATGC
* *
1081778 AAAACAAAAATCATAAATATCATTTATCCTAAT-AAGGAGAATGTGTTTATAGTGCCTAATCACA
66 AAAA-GAAAATCATCAATATCATTTATCCTAATGAA-GAGAATGTGTTTATAGTGCCTAATCACA
* * * * *
1081842 AAATGAGTAAAGATCATTAGTAGAATCAATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTAC
129 AAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAC
* * ** * *
1081907 AAAAATTAGTAGGAAAAATGCCTTT-TCTGTGAAACCAAAAAATTAATATCATGTATCCTAATGA
194 AAAAATTGGTGGGAAAAATGCCTTTCT-TG-GAAACCAAAGCATCAATATCGTGTATCCTAATGA
* * * * *
1081971 GAAGACTATGTTTATGGTGCCTAATCTTTTGAAAATAATGGTGATTAGTATGAGTATTCTTGTTT
257 GAAGACTATGTTTATGGTGCCTAATC--CTGAAAAGAATGGGGATTAGTATGACTATTCATGTTT
* * * * * *
1082036 CTCTAATTTAAAAGACAAACTCTAATTCTAT
320 GTCTTATATAAGAGACAAACTTTGATTCTAT
1082067 GAGAAATGGT
Statistics
Matches: 2895, Mismatches: 602, Indels: 436
0.74 0.15 0.11
Matches are distributed among these distances:
454 1 0.00
455 124 0.04
456 132 0.05
457 91 0.03
458 103 0.04
459 123 0.04
461 1 0.00
463 1 0.00
464 6 0.00
465 5 0.00
466 9 0.00
467 3 0.00
468 2 0.00
469 10 0.00
470 2 0.00
471 4 0.00
472 1 0.00
473 200 0.07
474 119 0.04
475 489 0.17
476 531 0.18
477 392 0.14
478 93 0.03
479 9 0.00
480 10 0.00
481 6 0.00
482 6 0.00
483 7 0.00
485 1 0.00
486 2 0.00
487 5 0.00
488 15 0.01
489 6 0.00
490 4 0.00
491 11 0.00
492 9 0.00
493 7 0.00
494 1 0.00
495 2 0.00
496 3 0.00
498 5 0.00
499 4 0.00
500 4 0.00
501 2 0.00
502 1 0.00
503 2 0.00
505 7 0.00
509 7 0.00
511 1 0.00
512 1 0.00
513 2 0.00
514 6 0.00
515 3 0.00
516 7 0.00
518 2 0.00
519 5 0.00
520 1 0.00
521 2 0.00
522 3 0.00
523 15 0.01
524 11 0.00
525 5 0.00
526 7 0.00
527 8 0.00
528 3 0.00
529 5 0.00
530 1 0.00
531 4 0.00
532 8 0.00
533 2 0.00
534 6 0.00
535 3 0.00
536 5 0.00
537 15 0.01
538 61 0.02
539 72 0.02
540 12 0.00
541 7 0.00
544 3 0.00
545 3 0.00
546 2 0.00
547 7 0.00
549 4 0.00
550 5 0.00
551 4 0.00
552 6 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.32
Consensus pattern (474 bp):
TTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTACATGC
AAAAGAAAATCATCAATATCATTTATCCTAATGAAGAGAATGTGTTTATAGTGCCTAATCACAAA
ATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAA
AAATTGGTGGGAAAAATGCCTTTCTTGGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAG
ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTA
TATAAGAGACAAACTTTGATTCTATCAAAAACAGCAGAAAGAAAAGCTTTTCTTGCGACACCAAA
GCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGTTCCCAATCTTGAAAAAATGGAGA
CTGTTACGAGAATCGATGC
Found at i:1080089 original size:31 final size:31
Alignment explanation
Indices: 1080054--1080114 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
1080044 CTATGTTTAT
1080054 GGTGCCTAATCTTGAAAAGAAT-AGGGATTAG
1 GGTGCCTAATCTTGAAAAGAATGA-GGATTAG
1080085 GGTGCCTAATCTTGAAAAGAATGAGGATTA
1 GGTGCCTAATCTTGAAAAGAATGAGGATTA
1080115 CTATTACTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
31 28 0.97
32 1 0.03
ACGTcount: A:0.36, C:0.10, G:0.28, T:0.26
Consensus pattern (31 bp):
GGTGCCTAATCTTGAAAAGAATGAGGATTAG
Found at i:1083252 original size:473 final size:473
Alignment explanation
Indices: 1082208--1083256 Score: 1194
Period size: 476 Copynumber: 2.2 Consensus size: 473
1082198 AATACAGTGT
* * *
1082208 ATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTAT-AAGTA
1 ATCCTAATGAGAAGACTATGTTTATGGTACATAATCCTAAAAAGAATGGGGATTAGTATGAA-TA
* * * * **
1082272 TAAATGTTTGTCTTATTTAAGAGGCAAACTTCGCTTCTATCAAATACCGTAGAAAGGGAAGCTTT
65 TTAATGTTTGTCTTATTTAAGA--CAAACTTTGATTCTATCAAATAACGTAGAAAGAAAAGCTTT
* * * ** *
1082337 TCTTGCGGCACCAAAGCATTAAAGTCCAGAATCCTAATGAAGGGAATGTGCTTCGGTTTCCCTAT
128 TCTTACGACACCAAAGCATCAAAGTCCAGAATCCTAATGAAGGGAATGCACTTCGGCTTCCCTAT
* * *
1082402 CTTGAAAAGAATGGAGACTGTTACCAAAATTAATGCTTGTCTTATTTAAGGGATGAACTATGATT
193 CTTGAAAAGAATGGAGACTGTTACCAAAATCAATGCTTGACTTACTTAAGGGAT-AACTATGATT
* * *
1082467 TAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCGTCAATATCATTTATCCTA
257 TAAAGGAAAATAGAGCAAAGAAAAGATTTCCAAGCAAAAGAAAACCATCAATATCATTTATCCTA
* *
1082532 ATGAGGAGAAAATGTTTATAGTGCCTAATCACAAAATGAATGAAAATCATTACAAGAACCCATGT
322 AAGAGGAGAAAATGTTTATAGTGCCTAATCACAAAAAGAATGAAAATCATTACAAGAACCCATGT
* ** * * * *
1082597 TTGTCTCATTTGAGGCATGAACATAGACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTATGA
387 TTGCCTCATTTGAGGCACAAACATAGACTGTACAAAAATTAGTAGGAAAAAAGCCTTTCTCATGA
*
1082662 AACCAAAGCATAAATATCAAGT
452 AACCAAAGCATAAATATCAAGC
* * * ** *** *
1082684 ATCCCAATGAGAAGACCATGTTTATGGTTCATAATCCCGAAAAGAATAACGATTAGTATGACTAT
1 ATCCTAATGAGAAGACTATGTTTATGGTACATAATCCTAAAAAGAATGGGGATTAGTATGAATAT
** * * * *
1082749 TCGTGTTTGTCTTATTTAAGGGACAAACTTTTATTCTATGAAA-AATGATGGAAAGAAAAGCTTT
66 TAATGTTTGTCTTATTTAA--GACAAACTTTGATTCTATCAAATAACG-TAGAAAGAAAAGCTTT
* * ** * * *
1082813 TCTTATGACACCAAAGCATCAATGT-CATGTTTCGTAATGAAGGGAATGCATTTTGGCTT-CCTA
128 TCTTACGACACCAAAGCATCAAAGTCCA-GAATCCTAATGAAGGGAATGCACTTCGGCTTCCCT-
* * * *
1082876 ATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGACTTACTTAAGGGAT-ACTTTGAT
191 ATCTTGAAAAGAATGGAGACTGTTACCAAAATCAATGCTTGACTTACTTAAGGGATAACTATGAT
* * * * *
1082940 TTTAAGGAAAATAGAGCAAAGAAAAGATTTCTAAGCAAAATAAAATCATCAATATCATTTTTCCT
256 TTAAAGGAAAATAGAGCAAAGAAAAGATTTCCAAGCAAAAGAAAACCATCAATATCATTTATCCT
** * * * * * *
1083005 AAAGAGGAGAATGTTTTTGTAGTTCCTAATCACAAAAAGAATGAAGATCATTACTAGAA-TCATG
321 AAAGAGGAGAAAATGTTTATAGTGCCTAATCACAAAAAGAATGAAAATCATTACAAGAACCCATG
* * * * *
1083069 TTTGCCTCATTTTAGGCACAAACTTAGACTGTATAAAAATTAGTGGGAAAAAAGCCTTTCTCGTG
386 TTTGCCTCATTTGAGGCACAAACATAGACTGTACAAAAATTAGTAGGAAAAAAGCCTTTCTCATG
* *
1083134 AAACCAAAGCATCAATATGATA-C
451 AAACCAAAGCATAAATATCA-AGC
* * * **
1083157 ATCCTAATGAGAAGACTATATTTATGCTACGTAATCCTAAAAAGAGCGGGGATTAGTATGAATAT
1 ATCCTAATGAGAAGACTATGTTTATGGTACATAATCCTAAAAAGAATGGGGATTAGTATGAATAT
*
1083222 TAATGTTTGTCTTATTTGAAGTATAAACTTTGATT
66 TAATGTTTGTCTTATTT-AAG-ACAAACTTTGATT
1083257 TTAAGGAAAA
Statistics
Matches: 470, Mismatches: 94, Indels: 21
0.80 0.16 0.04
Matches are distributed among these distances:
472 1 0.00
473 152 0.32
474 117 0.25
475 7 0.01
476 190 0.40
477 1 0.00
478 2 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.30
Consensus pattern (473 bp):
ATCCTAATGAGAAGACTATGTTTATGGTACATAATCCTAAAAAGAATGGGGATTAGTATGAATAT
TAATGTTTGTCTTATTTAAGACAAACTTTGATTCTATCAAATAACGTAGAAAGAAAAGCTTTTCT
TACGACACCAAAGCATCAAAGTCCAGAATCCTAATGAAGGGAATGCACTTCGGCTTCCCTATCTT
GAAAAGAATGGAGACTGTTACCAAAATCAATGCTTGACTTACTTAAGGGATAACTATGATTTAAA
GGAAAATAGAGCAAAGAAAAGATTTCCAAGCAAAAGAAAACCATCAATATCATTTATCCTAAAGA
GGAGAAAATGTTTATAGTGCCTAATCACAAAAAGAATGAAAATCATTACAAGAACCCATGTTTGC
CTCATTTGAGGCACAAACATAGACTGTACAAAAATTAGTAGGAAAAAAGCCTTTCTCATGAAACC
AAAGCATAAATATCAAGC
Found at i:1084454 original size:477 final size:474
Alignment explanation
Indices: 1083449--1084611 Score: 1460
Period size: 477 Copynumber: 2.4 Consensus size: 474
1083439 CCACGGACAG
* *
1083449 TATCGTGTATCCTAATGAGAAGA-TAATGTTTATGGTCCCTAATCCTAAAAGAATCGAGATTAGT
1 TATCGTGTATCCTAATGAGAAGACT-ATGTTTATGGTACCTAATCCTAAAAGAATGGAGATTAGT
* * *
1083513 CTGACTATTCATGCTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGCTGAAAGAA
65 ATGACTATTCATGTTTGTCTTATATAAGAGACAAACTTTGATTCTATCAAAAACAG-TGAAAGAA
* **
1083578 AAGCTTTTCTTGCGACGCCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGCATTTTGGCT
129 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCT
** * * * *
1083643 TCCTTATCTTAAAAAAAATGAAGACAGCTATCAGAATCGATGCTTGTTTTATTGAAGGGATGAAT
194 TCCCAATCTTGAAAAGAATGAAGACAGCTATCAGAATCGATGCTTGTCTTATTGAAGGGATGAAC
** ** *
1083708 TTTGATTTTAAGAAAAATAAGGCAAAGAATAGATTTTTATGCAAAGGAAAATCATCAATATCATT
259 TTCAATTTTAAGAAAAATAAGGCAAAGAATAGATTTACATGCAAAAGAAAATCATCAATATCATT
1083773 TATCCTAATAAAGAGAATGTTGTTACAGTGCCTAAACACAAAAAGAATGAAGATCATTACTAGAA
324 TATCCTAATAAAGAGAATGTTGTTACAGTGCCTAAACACAAAAAGAATGAAGATCATTACTAGAA
* * * *
1083838 TTCATGTTTGTCTCATTTGAGGTAGGAACTTAGACGTTACAAAAATTAGTGAGAAAAATGCCTTC
389 TCCATGTTTGTCTCATTCGAGGCAGGAACTTAGACGTTACAAAAACTAGTGAGAAAAATGCCTTC
*
1083903 CTTGCAAAATCAAAGCATCAA
454 CTTGCAAAACCAAAGCATCAA
* *
1083924 TATCATGTATCCTAATGAGAAGACTATGTTTATGGCACCTAATCCTGAAAAGAATGGAGATTAGT
1 TATCGTGTATCCTAATGAGAAGACTATGTTTATGGTACCTAATCCT-AAAAGAATGGAGATTAGT
* * * * * *
1083989 ATGACTATTCATGTTTATCTTATATAAAAGACAAACTTTGATTTTTTTCAAAAATAGTGGAAATA
65 ATGACTATTCATGTTTGTCTTATATAAGAGACAAACTTTGA-TTCTATCAAAAACAGT-GAAAGA
* * * *
1084054 AAAGCTTTTCTTGCAACACCAAAGCATCAATGCCATGTATCCTAATGAAGGGAGTGTGTTTTGGG
128 AAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGC
* * * * * *
1084119 TTCCCAATCTTGAAAAGATTGGAGACTA-TTA-CTAGAATCGATGCTTGTCTTGTTTAAGGGATT
193 TTCCCAATCTTGAAAAGAATGAAGAC-AGCTATC-AGAATCGATGCTTGTCTTATTGAAGGGATG
* * *
1084182 AACTTCAATTTTACA-AAAAATAGGGCAAAGGAA-AGATTTACATGCAAAATAAAATCATGAATA
256 AACTTCAATTTTA-AGAAAAATAAGGCAAA-GAATAGATTTACATGCAAAAGAAAATCATCAATA
* * * * * * * *
1084245 TCATTTATCCTAATGAAGAGAGTG-TGTTTGCATTGCCTTATCACAAAATGAATGAAGATCGTTA
319 TCATTTATCCTAATAAAGAGAATGTTG-TTACAGTGCCTAAACACAAAAAGAATGAAGATCATTA
* ** * *
1084309 CTAGAATCCATGTTTGTCTCATTCGAGGCATGAACTTAGATTTTACAAAAACTGGTGGGAAGAAA
383 CTAGAATCCATGTTTGTCTCATTCGAGGCAGGAACTTAGACGTTACAAAAACTAGTGAGAA-AAA
* ** *
1084374 -GCCTTTCTTGTGAAACCAAAGCGTCAA
447 TGCCTTCCTTGCAAAACCAAAGCATCAA
* * * * *
1084401 TATCGTGTATCCTAATGAGAAAACTATGTTTACGGTGCCTAGTCCTAAAAAGAATGGGGATTAGT
1 TATCGTGTATCCTAATGAGAAGACTATGTTTATGGTACCTAATCCT-AAAAGAATGGAGATTAGT
* * *
1084466 ATGACTATTCATGTTTGTTTTAAATAAGAGACAAACTTTGATTCTATCAAAAACAG-CAGAAGAA
65 ATGACTATTCATGTTTGTCTTATATAAGAGACAAACTTTGATTCTATCAAAAACAGTGA-AAGAA
* * * ** *
1084530 AAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTACTTAAGCCAATGTGTTTTGCCT
129 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCT
*
1084595 TCCCAATCTAGAAAAGA
194 TCCCAATCTTGAAAAGA
1084612 GTAGACACAT
Statistics
Matches: 587, Mismatches: 90, Indels: 22
0.84 0.13 0.03
Matches are distributed among these distances:
474 1 0.00
475 116 0.20
476 70 0.12
477 392 0.67
478 8 0.01
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (474 bp):
TATCGTGTATCCTAATGAGAAGACTATGTTTATGGTACCTAATCCTAAAAGAATGGAGATTAGTA
TGACTATTCATGTTTGTCTTATATAAGAGACAAACTTTGATTCTATCAAAAACAGTGAAAGAAAA
GCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTC
CCAATCTTGAAAAGAATGAAGACAGCTATCAGAATCGATGCTTGTCTTATTGAAGGGATGAACTT
CAATTTTAAGAAAAATAAGGCAAAGAATAGATTTACATGCAAAAGAAAATCATCAATATCATTTA
TCCTAATAAAGAGAATGTTGTTACAGTGCCTAAACACAAAAAGAATGAAGATCATTACTAGAATC
CATGTTTGTCTCATTCGAGGCAGGAACTTAGACGTTACAAAAACTAGTGAGAAAAATGCCTTCCT
TGCAAAACCAAAGCATCAA
Found at i:1088691 original size:20 final size:20
Alignment explanation
Indices: 1088666--1088722 Score: 78
Period size: 20 Copynumber: 2.9 Consensus size: 20
1088656 TTTTACCTAG
1088666 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * *
1088686 ATGTATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
*
1088706 ATGTATTGATACATTTT
1 ATGTATCGATACATTTT
1088723 GTATTTTTAC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.44
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:1091139 original size:474 final size:474
Alignment explanation
Indices: 1090187--1097190 Score: 7679
Period size: 474 Copynumber: 14.8 Consensus size: 474
1090177 CATGCGGAAG
* * *
1090187 AGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCAAATTA-GAGGAATGTGTTT
1 AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGA-GAATGTGTTT
* * * * * * *
1090251 ATAGTGGCTAATCACAAAATGAATGAAGATTAGTACTAGAATCCTTGTTTGTCTTATTTGGGGCA
65 ATAGTGCCTAATCACAAAATGAATGAAGATCATTACAAGAATCCATGTTTGTCTCATTTGAGGCA
* * * *
1090316 TGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAACATTAATAT
130 CGAACTTAGACTTTACAAAAATTGGTAGGAA-AAAGCCTTTCTTGCGAAACCAAAGCATCAATAT
* * *
1090381 CATGTATCCTAATGAGAAGACTATGTTTATGGTTCCTAATCCTGAAAAGAATAGGGATTAGTATG
194 CGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATG
* * * * * *
1090446 ACTTTTTCA-GTTTGTCTTATATAAGAGGCAAACATTGATTCTATAAAAAACGAG-GGTAAGAAA
259 AC-TATTCATGTTTG-CTTATATAAGAGACAAACTTTGATTCTATCAAAAATG-GTGGAAAGAAA
* * ** * * *
1090509 AGCATTTCTTACGACACCAAAGCATCAACATCATGTATCTTAATCAAGGGAATGCGTTTTGGCTT
321 AGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTT
* ** * *
1090574 CCCAATCTTGGAAAGAATGGAGACCATTACGTGAATCGATGCTTGTATTATTTAAGGGATGAACT
386 CCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACT
** *
1090639 TTGATTTTGGGGAAAATAGTGCAA
451 TTGATTTTAAGGAAAATAGGGCAA
* * * * * * *
1090663 AGAAAAGATTTCCAAGCGAACA-AAAATCATAAATATCTTTTATCTTAATAAAGAGAATGTGTTT
1 AGAAAAGATTTCCATGC-AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTT
* ** * * *
1090727 ATAGTGCCCAATCACAAAATGGGTGAAGATCATTAGAAGAATGCATATTTGTCTCATTTGAGGCA
65 ATAGTGCCTAATCACAAAATGAATGAAGATCATTACAAGAATCCATGTTTGTCTCATTTGAGGCA
* * * * * *** *
1090792 CGAACCTAGACATTACAAAACTTAGTAGGAATAAAGCCTTTTTTTTAAAACCAAAACATCAATAT
130 CGAACTTAGACTTTACAAAAATTGGTAGGAA-AAAGCCTTTCTTGCGAAACCAAAGCATCAATAT
* * *
1090857 CGTGTATCCTAATGAGAAGACTATGTTTATGGTG-TTAATCCTTAAAAGATTGGGGATTAGTATG
194 CGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATG
* * ** * *
1090921 ACTTTTCAAGTTTGCTTATATAAGAGACAAACTTTGACACAATCAAAAACGGTGGAAAGAAAAGC
259 ACTATTCATGTTTGCTTATATAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGC
* * *
1090986 TTTTCTTGCAACACTAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTCGGCTTCCC
324 TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCC
* * * * * *
1091051 AATCTAGAAAAGATTGGAGACTATTACGAAAATCGATGCTTATCTTATTTAAGGAATGAACTTTG
389 AATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTG
*
1091116 ATTTTAAGAAAAATAGGGCAA
454 ATTTTAAGGAAAATAGGGCAA
* * * * ** * ** * *
1091137 AGAATAGGTTTTCAAGCAAAACTAAATCATCAATGTCATTTATCCTAACAAAGAGAATGTGTTTT
1 AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
* * * * * *
1091202 TAGTGCCTAATCACAAAGTG-ATCGAAGATCATTGC-CGAAATCCTTGTTTATCGT-AGTTGAGG
66 TAGTGCCTAATCACAAAATGAAT-GAAGATCATTACAAG-AATCCATGTTTGTC-TCATTTGAGG
* * * * * *
1091264 CACAAACTTAGAATTTACAAAAATTAGTGGGAAAAATGCCTTTGTTGCAAAACCAAAGCATCAAT
128 CACGAACTTAGACTTTACAAAAATTGGTAGGAAAAA-GCCTTTCTTGCGAAACCAAAGCATCAAT
* * * * * *
1091329 GTCATGTA-CCTTAATGAGAAGACTATGTTTATTGTGCCCAATCCTGAAAAAAAATGGAGATTAG
192 ATCGTGTATCC-TAATGAGAAGACTATGTTTATGGTGCCTAATCCTG-AAAAGAATGGGGATTAG
* ** * *
1091393 TATGACTATTCATGTTCAT-CTTATTTAAGAGGTAAACTTTGATTCTATTAAAAATGGTGGAAAA
255 TATGACTATTCATGTT--TGCTTATATAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAG
* *
1091457 AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAACGGAATGGGTTTTGG
318 AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGG
* * * *
1091522 CTTCCCAATCTTGAAAAGAATAGG-GACAGTTATGAGAATCGATGATTGTCTTATTTAAGGAATG
383 CTTCCCAATCTTGAAAAGAAT-GGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATG
*
1091586 -ACTTTTGATTTTAAGGAAAA-AGCGACAA
447 AAC-TTTGATTTTAAGGAAAATAG-GGCAA
* *
1091614 AGAAAAGATTTCCATGCAATAA-AAAATCATCAATATCAATTATCCTAATGAGGAGAATGTTTTT
1 AGAAAAGATTTCCATGCAA-AAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTT
* ** ** * *
1091678 ATATTGCCTAATCACAAAATGAAAAAAGATCATTTTAAGAATCTATGTTGGTCTCATTTGAGGCA
65 ATAGTGCCTAATCACAAAATGAATGAAGATCATTACAAGAATCCATGTTTGTCTCATTTGAGGCA
*
1091743 CGAACTTAGACTTTACAAAAATTGGTAGGAAAAATGCCTTTCTTGTGAAACCAAAGCATCAATGA
130 CGAACTTAGACTTTACAAAAATTGGTAGGAAAAA-GCCTTTCTTGCGAAACCAAAGCATCAAT-A
* * * * * *
1091808 -CATGTATCCTACTAAGAAGTCTATGTTTATGGTGCCTAATCTTGAAAAGAATAGGGATTAGTAT
193 TCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTAT
* * * * * *
1091872 GACTATTCATGTTCAT-CTTATTTAAGAGGCAAAGTTTGATTCTATTAAAAACGATGGAAAGAAA
258 GACTATTCATGTT--TGCTTATATAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAA
*
1091936 AGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAA--AA-GGAATGCGTTTTGGCTT
321 AGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTT
* *
1091998 CCCAATCTTGAAAAGAATGGAGA-TAGTTATC-AGAATCGATACTTGTCTTATTTAAGGCATGAA
386 CCCAATCTTGAAAAGAATGGAGACT-GTTA-CGAGAATCGATGCTTGTCTTATTTAAGGGATGAA
* *
1092061 CATTGATTTTAAGGAAAA-AGTGACAA
449 CTTTGATTTTAAGGAAAATAG-GGCAA
* * * *
1092087 AGAAAAGATTTTCATGCAATAA-AAAATCATCAATATCAATTATTCTAATGAGGTGAATGTGTTT
1 AGAAAAGATTTCCATGCAA-AAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTT
* * * *
1092151 ATAGTGCCTAATGACAAAATGAAAGAAGATCATTACAA-ATATCTATGTTTATCTCATTTGAGGC
65 ATAGTGCCTAATCACAAAATGAATGAAGATCATTACAAGA-ATCCATGTTTGTCTCATTTGAGGC
* * * * * *
1092215 ATGAACATATACTTTACAAAAATTGGCAGGAAAAATGCTTTTCTTGC-AAATCCAAAGCATCAAC
129 ACGAACTTAGACTTTACAAAAATTGGTAGGAAAAA-GCCTTTCTTGCGAAA-CCAAAGCATCAAT
** *
1092279 ATAATGTATCCTAATGAGAAGACTATGTTTAAGGTGCCTAATCCTGAAAAGAATGGGGATTAGTA
192 ATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTA
* * * * *
1092344 TGACTATTCATG-TT-CATATTTTAAAGAGATAAACTTTTATTCTA-CAAAAAATGATGGAAAGA
257 TGACTATTCATGTTTGCTTA-TAT-AAGAGACAAACTTTGATTCTATC-AAAAATGGTGGAAAGA
* * *
1092406 AAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATTCTAATGAAGGGAATGCGTTTTGGC
319 AAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGC
* * *
1092471 TTCCCAATCTTGAAAAGAATTGAGGCTGTTAC-ATGAATCGATGCTTGTCTTATTTAAGGGAAGA
384 TTCCCAATCTTGAAAAGAATGGAGACTGTTACGA-GAATCGATGCTTGTCTTATTTAAGGGATGA
* *
1092535 ACTTTGATTGTAAGGAATATAGGGCAA
448 ACTTTGATTTTAAGGAAAATAGGGCAA
* * * * *
1092562 A-AAAAGATTTACAAGCGAAAGAAAATCATAAATATCATTTATCCTAATAAGGAGAATGTGTTTA
1 AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
* * * * * * *
1092626 TAGTGCCCAATCACAAAATGAGTGAAGATCATTAGAAGAATGCATATTTGTCTCTTTTAAGGCAC
66 TAGTGCCTAATCACAAAATGAATGAAGATCATTACAAGAATCCATGTTTGTCTCATTTGAGGCAC
* * * * * ** *
1092691 AAACTTAGACATTACAAAAATTGGTAGGAAGAAAGCCTTTCTTTCAAAACCAATGTGTCACTATC
131 GAACTTAGACTTTACAAAAATTGGTAGGAA-AAAGCCTTTCTTGCGAAACCAAAGCATCAATATC
* * * * *
1092756 GTGTATCCTAATATAAGAAGACTATGTTTATCGTGCCTAATCCTAAAAAGAATAGAGATTAGTAT
195 GTGTATCCT-A-ATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTAT
* * * *
1092821 GACTATTCATGGTTGTCTTATATAAGAGACAAACTTTGATACTATCAAAAACGCTGGAAAG-AAA
258 GACTATTCATGTTTG-CTTATATAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAA
* * * * * * *
1092885 TCTTTTCTTGTGACACCAAAGCATGAATGTCATGTATCCTAATGAA-AGAGTTGTGTTTCGACTT
322 GCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGA-ATGTGTTTTGGCTT
** * * * * * * *
1092949 CCCAATCTAAAAAAGATTGGAGACTATTACGAGAATCGAGGCTTGCCTTATTTAACGAATGATCT
386 CCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACT
* *
1093014 TTGATTTTAAGAAAAATAAGGCAA
451 TTGATTTTAAGGAAAATAGGGCAA
* *
1093038 A-AAAAGTTTTCCATGCAAAAGAAAATCATCAATAT-GTTTAATCCTAATGA-GAGAATGTGTTT
1 AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTT-ATCCTAATGAGGAGAATGTGTTT
* * * * * * *
1093100 ATAGTGCCTAATGACCAAAT-AAGTAAAGATCATTACTAA-AATCCTTATTTGTGTCAGTTGAGG
65 ATAGTGCCTAATCACAAAATGAA-TGAAGATCATTAC-AAGAATCCATGTTTGTCTCATTTGAGG
* * * * * *
1093163 CACAAACTTAGACTTTATAAAAACTGGTGGGAAAAATGCCTTTTTTGCGAAACCAAAACATCAAT
128 CACGAACTTAGACTTTACAAAAATTGGTAGGAAAAA-GCCTTTCTTGCGAAACCAAAGCATCAAT
* * *
1093228 ATCGTGTATCCTCATGAGAAGACTA--TTTATCGTGCCTAATCCTGAAAAGATTGGGGATTAGTA
192 ATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTA
* * * ** *
1093291 TGACTATTCAAGTTTGTCTTATATAAGAGGCAAACATTGACACTATCAAAAACGGTGGAAAGAAA
257 TGACTATTCATGTTTG-CTTATATAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAA
* * * * * * * *
1093356 TA-CTTTTCTTGCAACATCAAAGCATCAATGTTATGTGTCCTATTAAAGAGAACGTGTTTTGGCT
321 -AGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCT
* * * * ** ** *
1093420 TCGCAATCTTGAAAAGAGTAGAGACTGTTATGAGAATTAATTTTTATCTTATTTAAGGGATGAAC
385 TCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAAC
* *
1093485 TTTGATTTTATGGAAAATAAGGCAA
450 TTTGATTTTAAGGAAAATAGGGCAA
* ** * * *
1093510 AGAAAAGATTTTCATGTGAAAGAAAATCATCAATATCATTTATCCTAATCAAGAGAATGTGTTCA
1 AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
* * ** * *
1093575 TGGTGCCTAATGACAAAATGAGCGAAGATCATTAGAAGAATCCATGTTTGCCTCATTTGAGGCAC
66 TAGTGCCTAATCACAAAATGAATGAAGATCATTACAAGAATCCATGTTTGTCTCATTTGAGGCAC
* * * * *
1093640 AAACTTAGACTTCACAAAAATTGGTGGGAAGAAAGCCTTTTTTTCGAAACCAAAGCATCAATATC
131 GAACTTAGACTTTACAAAAATTGGTAGGAA-AAAGCCTTTCTTGCGAAACCAAAGCATCAATATC
* * * * *
1093705 GTGTATCTTAATAAAAAGACTATGTTTATGGTGCCTAAT-CTGGAAAAGATTGGTGATTAGTATG
195 GTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT-GAAAAGAATGGGGATTAGTATG
* * **
1093769 ACTATTCAAGTTTATCTTATATAAGAGACAAACTTTGACACTATCAAAAATAGG-GGAAAGAAAA
259 ACTATTCATGTTT-GCTTATATAAGAGACAAACTTTGATTCTATCAAAAAT-GGTGGAAAGAAAA
** * *
1093833 GCTTTTCTTGTAACACCAAAGCATCAAAGTCATGTATCCTAATGAAGGGAATGTGTTTCGAGC-T
322 GCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTG-GCTT
* * * *
1093897 CCCAATCTAGAAAAGATTGGAGACTGTTATGAGAATCGATGCTTGTCTTATTTGAGGGATGAACT
386 CCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACT
1093962 TTGATTTTAAGGAAAATAGGGCAA
451 TTGATTTTAAGGAAAATAGGGCAA
* * * * * * *
1093986 AGAATAGGTTTTCATGCAACAGAAAATCATCAATATCATCTATCTTAATGAGGAGAATGCGTTTA
1 AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
* * ** * * * *
1094051 TAGTGCCTAATCACAAAATGAACGAAGATTATTACTTGAATCCAAGTTTGCCTCTTTTGAGGAAC
66 TAGTGCCTAATCACAAAATGAATGAAGATCATTACAAGAATCCATGTTTGTCTCATTTGAGGCAC
* **
1094116 GAACTT-GAGCTTTACAAAAATTAGTAGGAAGAAAGCCTTTCTTATGAAACCAAAGCATCAATAT
131 GAACTTAGA-CTTTACAAAAATTGGTAGGAA-AAAGCCTTTCTTGCGAAACCAAAGCATCAATAT
* * * * * ** *
1094180 CGTGGATCCTAATGAGAAGATTATGTTTTATGGTGCGTAATCC-GAAAAAAAATAGGGATTCTTG
194 CGTGTATCCTAATGAGAAGACTATG-TTTATGGTGCCTAATCCTG-AAAAGAATGGGGATTAGTA
* * * * * * *
1094244 TGAGTATTCGTGCTTAT-CCTATTTAAGAGACAAACTTTGATTTTACCAAAAACGGTGGAAAGAA
257 TGACTATTCATG-TT-TGCTTATATAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAA
* * ** *
1094308 AAGCTTTTCTTGTGAC-CTCAAAGCATCAATGTCATGTATTCTAATGAAGGGAATGTCCTTTAGC
320 AAGCTTTTCTTGCGACAC-CAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGC
* * ** * * * **
1094372 TTACCAATCTTGAAAGGAATAAAGACTGTTACGAGAGTTGATGGTTGTCTTATTTAAGGTTTGAA
384 TTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAA
* * *
1094437 CTTT-AGGTTAAAGGAAAATGGGGCAA
449 CTTTGA-TTTTAAGGAAAATAGGGCAA
* *
1094463 AGAAAAGATTTCCATACAAAAG-AAATCATCAATATCATTTATCCTAATGAGGGGAATGTGTTTA
1 AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
* * * * *
1094527 TAATGCCTAATCACAAAATGAATGAAGATTACTACTAGAATCCATGTTTGTCTCATTTGAGGCAT
66 TAGTGCCTAATCACAAAATGAATGAAGATCATTACAAGAATCCATGTTTGTCTCATTTGAGGCAC
* * * * *
1094592 GAACTTAGATTTTACAAAAACTGGTGGGAAAATGCCTTTCTTGTGAAACCAAAGCATCAATAT-G
131 GAACTTAGACTTTACAAAAATTGGTAGGAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCG
* * *
1094656 ATGTATCCTAAT-AGCAGGACTATGTTTATGTTGCCTAATCTTGAAAAGAATGGGGATTAGTATG
196 -TGTATCCTAATGAG-AAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATG
* * * * * * *
1094720 AGTTTTCATGTTTGTCATATTTAAAAGACAAACTTTGACTCTATCAAAAATGATGGAAAGAAAAG
259 ACTATTCATGTTTG-CTTATATAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAG
* * * * *
1094785 CTTTTCTTGCGACACCAAAGCATCACTGTCTTGTGTCCAAATGAAGGGAAT-TGTTTTCGCTTCC
323 CTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCC
* ** * *
1094849 CAATCTTGAAAAGAATAGAGTTTGTTATGAGAATCGATGCTTGTTTTATTTAAGGGATGAACTTT
388 CAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTT
1094914 GATTTTAAGGAAAATAGGGCAA
453 GATTTTAAGGAAAATAGGGCAA
* * * *
1094936 AGAAAAGATTTTCATGCAAAAGAAAATCATCTATATCATTTATCCTAATAAGGAGAATGTGTTTT
1 AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
* * * * * *
1095001 TAATGCCTAATCAAAAAATGAATAAAGATCATTACTAA-AATCCTTGTTTATCTCAGTTGAGGCA
66 TAGTGCCTAATCACAAAATGAATGAAGATCATTAC-AAGAATCCATGTTTGTCTCATTTGAGGCA
* * * * * **
1095065 CGATCTTAGACTTTACAAAAATTAGTTGGAAAAATGCTTTTCTTGTGAAACCAAAGCATCAACGT
130 CGAACTTAGACTTTACAAAAATTGGTAGGAAAAA-GCCTTTCTTGCGAAACCAAAGCATCAATAT
* * **
1095130 CATGTATCCTAATGAGAAGACTAGGTTTATGGTGCCTAATCCTGAAAAGAATCCGGATTAGTATG
194 CGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATG
* * * * * *
1095195 ACTATTCATGTTTGTCTTATTTTCAGAGACAAACATTGATTCTATAAAAAATGGTGTAAACAAAA
259 ACTATTCATGTTTG-CTTA-TATAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAA
* * * **
1095260 GCTTTTCTTACGATACCAAAGCATCAATGTCATGGATCCTAATGAAGGGAATGCATTTTGGCTTC
322 GCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTC
* * * * *
1095325 CCAAAC-TGCAAAAGAATAGAGACAGTTACAAGAATCGATGCTTG-CTTTATTTAAGGCATGAAC
387 CCAATCTTG-AAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTC-TTATTTAAGGGATGAAC
* * *
1095388 TTTGATTTTAAGGAAAA-CGCGACAG
450 TTTGATTTTAAGGAAAATAG-GGCAA
*
1095413 AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCGAATGA-GAGGAATGTGTTT
1 AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGA-GAATGTGTTT
* * * *
1095477 ATAGTGGCTAATCACAAAATCAATGAAGATCATTACCAGAATCCATGTTTGTCTCATTTGGGGCA
65 ATAGTGCCTAATCACAAAATGAATGAAGATCATTACAAGAATCCATGTTTGTCTCATTTGAGGCA
* * * * * *
1095542 TGAGCTTAGACGTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTACGAAA-CAAAACGTCAATAT
130 CGAACTTAGACTTTACAAAAATTGGTAGGAA-AAAGCCTTTCTTGCGAAACCAAAGCATCAATAT
* * * * *
1095606 CATGTATCCCAATGAGAAGACTATGTTTATGGAGCCTAATCCTGAAAGGAATAGGGATTAGTATG
194 CGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATG
*
1095671 ACTATTCATATTTGTCTTATATAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAG
259 ACTATTCATGTTTG-CTTATATAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAG
* * *
1095736 CTTTTCTTGCTACACCAAAGCATCAATGTCATGTATCTTAATGAAAGGAATGTGTTTTGGCTTCC
323 CTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCC
* * * * * * *
1095801 TAATCTAGAAAAAAATGGAGAATGTTAC-ACAAATCGATTCTTGTCTTATTTAATGGATGAACTT
388 CAATCTTGAAAAGAATGGAGACTGTTACGA-GAATCGATGCTTGTCTTATTTAAGGGATGAACTT
1095865 TGATTTTACA--AAAATTAGGGCAA
452 TGATTTTA-AGGAAAA-TAGGGCAA
* *
1095888 ATAAAAGATTTCTATGCAAAAGAAAATCATCAATATCATTTATCCTAA--A-GAGAATGTGTTTA
1 AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
* * *
1095950 TAGTGCCTAATCACAAAATGAATGAAGATAATTACTAGAA-CTCATGTTTGTCTCATTTAAGGCA
66 TAGTGCCTAATCACAAAATGAATGAAGATCATTACAAGAATC-CATGTTTGTCTCATTTGAGGCA
* * * * **
1096014 CGAACTAAGACGTTACAAAAATTAG-AGGGAAAAAAGCCTCTCTTGCGAAACCAAAAAATCAATA
130 CGAACTTAGACTTTACAAAAATTGGTA-GG-AAAAAGCCTTTCTTGCGAAACCAAAGCATCAATA
* **
1096078 TCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGACGATTAGTAT
193 TCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTAT
* * * * * * *
1096143 GACAACTCATGTTTATCTTATTTAAGAGACAAACTTCGATTCAATCAAAAATGGTGGAAGGAAAA
258 GACTATTCATGTTT-GCTTATATAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAA
* * * * * ** *
1096208 GCTTTTCTTGTGACCCCAAAGCATTAATGTCATGTATCCTAATGAAAGGAAGGCCTTTTGGCATC
322 GCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTC
* * *
1096273 CCAATCTTGAAAAGAATGGA-ACTGTTACGAAAATCGATGCTTGTCATATTTAAGGGTTGAACTT
387 CCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTT
* **
1096337 TGATTTTATGGAAAATAATTG-AA
452 TGATTTTAAGGAAAAT-AGGGCAA
* * * * * * * *
1096360 AAAAAAGATTTCCATGCAAAAAAAAATCAACAATATCTTTTATCCCAATGAGGAGATTGCGGTTA
1 AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
* * * * * * * *
1096425 TAGTGCCT-ATCACAAAATGAGTGAAAATCATTAGAAGAGTCCATATTTGTTTCTTTTTAGGCAC
66 TAGTGCCTAATCACAAAATGAATGAAGATCATTACAAGAATCCATGTTTGTCTCATTTGAGGCAC
* * * * * * *
1096489 AAACTTATACTTTAGAAAAATTGGTGGGAAGAAAGACATTCTTGCGAAACCAAAGCCTCAATATC
131 GAACTTAGACTTTACAAAAATTGGTAGGAA-AAAGCCTTTCTTGCGAAACCAAAGCATCAATATC
* * *
1096554 GTGTATCCTAATGAGAATACTATGTTTATAGT-CCTTAATCCTGAAAAGAATGGGGATTATTATG
195 GTGTATCCTAATGAGAAGACTATGTTTATGGTGCC-TAATCCTGAAAAGAATGGGGATTAGTATG
* * * *
1096618 ACTATTCATGTTTGTCTTATATAAGAGATAAACTTCGATTCTATCAAAAAAGGTGGGAA-AAAAG
259 ACTATTCATGTTTG-CTTATATAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAG
* ** * *
1096682 CTTTTATTGCGATTCCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTTGTGGCTTCC
323 CTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCC
*
1096747 CAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAACGGG-TGAACTT
388 CAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAA-GGGATGAACTT
* *
1096811 TGATTTT-ATGAAGAATAGGGAAA
452 TGATTTTAAGGAA-AATAGGGCAA
* *
1096834 AGAAAAGATTTCCATGCAAAAGAAAATCGTCAATATC-TTTATCCTAACGAGGAGAATGTGTTTA
1 AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
* * * * ** * * *
1096898 TAGTGCCTAGTCACAAAATGAATGAAGATTATTACTAGAACCCATGTTCATCTAATTAGAGGCAG
66 TAGTGCCTAATCACAAAATGAATGAAGATCATTACAAGAATCCATGTTTGTCTCATTTGAGGCAC
* * * * *
1096963 GAACTTAGACTTTACAAAAATTAG-AGGGAAAAAAGTCTTTCTTGTGAAGCCAAAGCATCAATGT
131 GAACTTAGACTTTACAAAAATTGGTA-GG-AAAAAGCCTTTCTTGCGAAACCAAAGCATCAATAT
* * * *
1097027 -GATGTATCCTAATAAGAAGACCAATG-TTATGGGGCCTAATCTTG-AAAGAATGGGGATTAGTA
194 CG-TGTATCCTAATGAGAAGA-CTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTA
* * * * * *
1097089 TGAGTATT-ACTGTTTATCTTAT-TTAGAAGACAAACTTTGATTCGATCAATAATAGTGGAAAGA
257 TGACTATTCA-TGTTT-GCTTATATAAG-AGACAAACTTTGATTCTATCAAAAATGGTGGAAAGA
*
1097152 AAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTA
319 AAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTA
1097191 AGGGATGAAC
Statistics
Matches: 5514, Mismatches: 875, Indels: 280
0.83 0.13 0.04
Matches are distributed among these distances:
470 4 0.00
471 95 0.02
472 404 0.07
473 886 0.16
474 1340 0.24
475 649 0.12
476 1272 0.23
477 842 0.15
478 18 0.00
479 4 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (474 bp):
AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
TAGTGCCTAATCACAAAATGAATGAAGATCATTACAAGAATCCATGTTTGTCTCATTTGAGGCAC
GAACTTAGACTTTACAAAAATTGGTAGGAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCG
TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAC
TATTCATGTTTGCTTATATAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTT
TTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAA
TCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGAT
TTTAAGGAAAATAGGGCAA
Found at i:1093890 original size:159 final size:159
Alignment explanation
Indices: 1093212--1093890 Score: 380
Period size: 159 Copynumber: 4.3 Consensus size: 159
1093202 CTTTTTTGCG
* * * * *
1093212 AAACCAAAACATCAATATCGTGTATCCTCAT---GAGAA-GACTATTTATCGTGCCTAATCCT-G
1 AAACCAAAGCATCAATATCATGTATCCTAATAAAGAGAATG--TGTTTATGGTGCCTAAT-CTGG
* * * * *
1093272 AAAAGATTGGGGATTAGTATGACTATTCAAGTTTGTCTTATATAAGAGGCAAACATTGACACTAT
63 AAAAGAGTGGTGATTAGTATGACTATTCAAGTTTATCTTATATAAGAGACAAACTTTGACACTAT
* *
1093337 CAAAAA-CGGTGGAAAGAAATA-CTTTTCTTGC
128 CAAAAATAGGTGGAAAGAAA-AGCTTTTCTTGT
* * * * * * * *
1093368 AACATCAAAGCATCAATGTTATGTGTCCTATTAAAGAGAACGTGTTT-TGGCTTCGC-AATCTTG
1 AA-ACCAAAGCATCAATATCATGTATCCTAATAAAGAGAATGTGTTTATGG-TGC-CTAATCTGG
* * * ** * * * ** ***
1093431 AAAAGAGTAGAGACT-GTTATGAGAATT-AATTTTTATCTTATTTAAGGGATGAACTTTGATTTT
63 AAAAGAGTGGTGATTAG-TATGACTATTCAA-GTTTATCTTATATAAGAGACAAACTTTGACACT
** * * * *
1093494 ATGGAAAATAAG-GCAAAGAAAAGATTTTCATGT
126 ATCAAAAATAGGTGGAAAGAAAAGCTTTTCTTGT
** * * * * *
1093527 GAAAGAAAATCATCAATATCATTTATCCTAATCAAGAGAATGTGTTCATGGTGCCTAA--TGACA
1 -AAACCAAAGCATCAATATCATGTATCCTAATAAAGAGAATGTGTTTATGGTGCCTAATCTG-GA
* * * * * ** * * * *
1093590 AAATGAGCGAAGATCATTAG-AAGA--ATCCATGTTTGCCTCATTTGAG-GCACAAACTTAGAC-
64 AAA-GAGTG--G-TGATTAGTATGACTATTCAAGTTTATCTTATATAAGAG-ACAAACTTTGACA
* * * *
1093650 TTCA-CAAAAATTGGTGGGAAG-AAAGCCTTTTTTTCG-
124 CT-ATCAAAAATAGGTGGAAAGAAAAG-CTTTTCTT-GT
* * * * *
1093686 AAACCAAAGCATCAATATCGTGTATCTTAATAAAAAGACTATGTTTATGGTGCCTAATCTGGAAA
1 AAACCAAAGCATCAATATCATGTATCCTAATAAAGAGAATGTGTTTATGGTGCCTAATCTGGAAA
*
1093751 AGATTGGTGATTAGTATGACTATTCAAGTTTATCTTATATAAGAGACAAACTTTGACACTATCAA
66 AGAGTGGTGATTAGTATGACTATTCAAGTTTATCTTATATAAGAGACAAACTTTGACACTATCAA
1093816 AAATAGG-GGAAAGAAAAGCTTTTCTTGT
131 AAATAGGTGGAAAGAAAAGCTTTTCTTGT
* *
1093844 AACACCAAAGCATCAA-AGTCATGTATCCTAATGAAGGGAATGTGTTT
1 AA-ACCAAAGCATCAATA-TCATGTATCCTAATAAAGAGAATGTGTTT
1093891 CGAGCTCCCA
Statistics
Matches: 373, Mismatches: 111, Indels: 75
0.67 0.20 0.13
Matches are distributed among these distances:
155 6 0.02
156 6 0.02
157 23 0.06
158 117 0.31
159 197 0.53
160 16 0.04
161 5 0.01
162 2 0.01
163 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (159 bp):
AAACCAAAGCATCAATATCATGTATCCTAATAAAGAGAATGTGTTTATGGTGCCTAATCTGGAAA
AGAGTGGTGATTAGTATGACTATTCAAGTTTATCTTATATAAGAGACAAACTTTGACACTATCAA
AAATAGGTGGAAAGAAAAGCTTTTCTTGT
Found at i:1098267 original size:470 final size:472
Alignment explanation
Indices: 1097397--1098316 Score: 1169
Period size: 470 Copynumber: 1.9 Consensus size: 472
1097387 TTTATGGTGC
* * * *
1097397 CTAATCCTGAAGAGAATGGGGATTAGAATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTT
1 CTAATCCTAAAAAGAATGGGGATTAGAATGACAATTAATGTTTATCTTATTTAAGAGACAAACTT
* * * *
1097462 TTATTCTATTAAAAACGGTGGAAAAAAAAGCTTTTCTTATGGAGCCAAAACATCAATGTCGTGTA
66 TGATTCTATCAAAAACGGTGGAAAAAAAAGCTTTTCTTATGGAACCAAAACATCAATGTCATGTA
* * *
1097527 TCCTAATGAAGCGAATGAGTTTTGGCTTGCCAATCTTGGAAAGAATGGAGACAGTTACGAGAATC
131 TCATAATGAAGCGAATGAGTTTTGGCATGCCAATCTTGAAAAGAATGGAGACAGTTACGAGAATC
** * * * *
1097592 GATGCTTAACTTATTTATGGGATGAACTTTGATTTTAAGCAGAATAGGGCAAAGAAAAGATTTTC
196 GATGCTTAACTTATTTAAAGGATAAACTTTGATTTTAAGCAAAATAGGGCAAAAAAAAGATTTCC
* *
1097657 ATGAAAAGAAAATCATCAATATCATTTATCCTAATGAGAGAAATGTGTTTATAGTGGCTAATCAC
261 ATGAAAAGAAAATCATCAATATCATTTATCCTAACGAGAGAAATGTGTTTATAGTGCCTAATCAC
* *
1097722 TAAATAAACAAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACTAAGACTTTA
326 AAAATAAACAAAGATCATTACAAGAATCCATGTTTGTCTCATTTAAGGCACGAACTAAGACTTTA
*
1097787 CAAAAATTGGTGG-GAAA-ATTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATAAGAA
391 CAAAAATTGGTGGAGAAACATTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATAAGAA
1097850 GTCTATGTTTATGGCCT
456 GTCTATGTTTATGGCCT
* ** *
1097867 CTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTAATGTTTATCTTATTTAGGAGACAAACTT
1 CTAATCCTAAAAAGAATGGGGATTAGAATGACAATTAATGTTTATCTTATTTAAGAGACAAACTT
* ** * * *
1097932 TGATT-TGATCAAAAATGGTGGAAGGAAAAGCTTTTCTTGT-GACACCAAAGCATTAATGTCATG
66 TGATTCT-ATCAAAAACGGTGGAAAAAAAAGCTTTTCTTATGGA-ACCAAAACATCAATGTCATG
** * *
1097995 TATCATAATGAAAG-GAATTCGTTTTGGCAT-CTCAATCTTGAAAAGAATGGAGACGGTTGCGAG
129 TATCATAATG-AAGCGAATGAGTTTTGGCATGC-CAATCTTGAAAAGAATGGAGACAGTTACGAG
* **
1098058 AATTGATGCTTGTCTTATTTAAAGGATAAACTTTGATTTTAATG-AAAATA-GGCAAAAAAAAGA
192 AATCGATGCTTAACTTATTTAAAGGATAAACTTTGATTTTAA-GCAAAATAGGGCAAAAAAAAGA
*
1098121 TTTCCATGCAAAAGAACATCATCAATATCATTTATCCTAACGAG-GAGAATGTGTTTATAGTGCC
256 TTTCCATG-AAAAGAAAATCATCAATATCATTTATCCTAACGAGAGA-AATGTGTTTATAGTGCC
* **** * * * *
1098185 TAATCACAAAATGAGTGGAGATCATT-CGAAGAATGCATGTTTGTCTCTTTTGTAGG-ATGAACT
319 TAATCACAAAATAAACAAAGATCATTAC-AAGAATCCATGTTTGTCTCATTT-AAGGCACGAACT
* * * * *
1098248 TAGACTTTACAAAAATTGGTGGAAAGAAATCCTTTTTTGTGAAACCAAAGCATTAATATCATGTA
382 AAGACTTTACAAAAATTGGTGG--AGAAA-CATTTCTTGCGAAACCAAAGCATCAATATCATGTA
1098313 TCCT
444 TCCT
1098317 GAAAAGATTA
Statistics
Matches: 382, Mismatches: 54, Indels: 23
0.83 0.12 0.05
Matches are distributed among these distances:
469 26 0.07
470 312 0.82
471 7 0.02
473 4 0.01
475 33 0.09
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (472 bp):
CTAATCCTAAAAAGAATGGGGATTAGAATGACAATTAATGTTTATCTTATTTAAGAGACAAACTT
TGATTCTATCAAAAACGGTGGAAAAAAAAGCTTTTCTTATGGAACCAAAACATCAATGTCATGTA
TCATAATGAAGCGAATGAGTTTTGGCATGCCAATCTTGAAAAGAATGGAGACAGTTACGAGAATC
GATGCTTAACTTATTTAAAGGATAAACTTTGATTTTAAGCAAAATAGGGCAAAAAAAAGATTTCC
ATGAAAAGAAAATCATCAATATCATTTATCCTAACGAGAGAAATGTGTTTATAGTGCCTAATCAC
AAAATAAACAAAGATCATTACAAGAATCCATGTTTGTCTCATTTAAGGCACGAACTAAGACTTTA
CAAAAATTGGTGGAGAAACATTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATAAGAA
GTCTATGTTTATGGCCT
Found at i:1099227 original size:476 final size:473
Alignment explanation
Indices: 1098323--1099572 Score: 1659
Period size: 476 Copynumber: 2.6 Consensus size: 473
1098313 TCCTGAAAAG
*
1098323 ATTATTATGACTATTTATGTTTGTCTTATATTAGAGACAAACTTTAATTTTATCAAAAATGGTGG
1 ATTATTATGACTATTTATGTTTATCTTATATTAGAGACAAACTTTAATTTTATCAAAAATGGTGG
* * * *
1098388 AAAAAAAAAGATTTTGTTACAACACCAAAGCATCAATGTCATGTATCCTAAAGAAGGGAATGTGT
66 -AAAAAAAA-ATTTTATTGCGACACCAAAGCATCAATGTCATGTATCCTAAAGAAGGGAATGTAT
* * * *
1098453 TTTGGCATCCCGATCTAGAAAGGAATAGAGACTATTACGAGAATCAATGTTTGTCTTATTTAATG
129 TTTGGCTTCCCGATCTAGAAA-GAATAGAGACTATTACGAGAATCGATGCTTGTCTTATTTAACG
*
1098518 GATGAACTTTGATTTTATGAAAAATAGGGCAAAGAAAATATTTTCATGC-AAAG-AAATTCATCA
193 GATGAACTTTGATTTTATGAAAAATAGGGCAAAGAAAATATTTCCATGCAAAAGAAAATT-ATCA
* * *
1098581 GTGTTATTTATCCTAATGAGGAGAATGTGTTTGTAGTGCCTAATCGCAAAATGAATGAAGATCAT
257 ATGTTATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAT
* *
1098646 TACTAGAACCCATGTTTGTCTTATTTGAGGCACGAACTTAGACTTTAAAATAATTGGAGTGAAAA
322 TACTAGAACCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAAAATAATTGGAGGGAAAA
* * * *
1098711 AAGCCTATCTTGTGAAACCAAAGCATGAATATCATGTATCCTAATGAGAAGACTACGTTTATTGT
387 AAGCCTATCTTGTGAAACCAAAGCATCAATATCATGTATCCTAATAAGAAAACTACGTTTATGGT
* *
1098776 GCCTAATCCT-ATAATGAATAGGA
452 CCCTAATCCTGA-AAAGAAT-GGA
* * **
1098799 ATTAGTATGACTATTTATGTTTATCTTAT-TTAAGAGACAAACTTCAATTCGATCAAAAATGGTG
1 ATTATTATGACTATTTATGTTTATCTTATATT-AGAGACAAACTTTAATTTTATCAAAAATGGTG
* * * ** ** *
1098863 GAAAGAAAAAATTTTCTTGGGACACCAAGGCATCAATGTCATGTATCCTATTGAAAAGAATGTTT
65 GAAA-AAAAAATTTTATTGCGACACCAAAGCATCAATGTCATGTATCCTAAAGAAGGGAATGTAT
* * * * *
1098928 TTTGGCTTCCCAATCAAGAGAAGAATGGAAACTATTATGAGAATCGATGCTTGTCTTATTTAACG
129 TTTGGCTTCCCGATCTAGA-AAGAATAGAGACTATTACGAGAATCGATGCTTGTCTTATTTAACG
* * * *
1098993 GATGAAGTTTGATTTTATGAGAAATAGTGCAAAGAAAAGATTTCCATGCAAAAGAAAATTATCAA
193 GATGAACTTTGATTTTATGAAAAATAGGGCAAAGAAAATATTTCCATGCAAAAGAAAATTATCAA
* * *** *
1099058 TATCATTTATCCTACCAAGGAGAATGTGTTTATAGTGCTTAATCACAAAATGAATGAAGATCATT
258 TGTTATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATT
* * * *
1099123 ACTAGAATCCATGTTTGTCTCATTTGCAGG-ATGAACTTAGACTTTACAAA-AATTGGTGGGAAG
323 ACTAGAACCCATGTTTGTCTCATTTG-AGGCACGAACTTAGACTTTA-AAATAATTGGAGGGAAA
* * * * *
1099186 AAATCCTATTTTGTGAAACCAAAGCATCAGTATCTTGTATCCTAATAAGAAAACTATGTTTATGG
386 AAAGCCTATCTTGTGAAACCAAAGCATCAATATCATGTATCCTAATAAGAAAACTACGTTTATGG
*
1099251 TCCCTAATCCTGAAAAGAATGGG
451 TCCCTAATCCTGAAAAGAATGGA
* * * **
1099274 ATTATTATGACTATTCATGTTTTTCTTATATTAGAGACAAACTTTGATTTTATCAAAAACAGTGG
1 ATTATTATGACTATTTATGTTTATCTTATATTAGAGACAAACTTTAATTTTATCAAAAATGGTGG
* * *
1099339 AAAAAAAGATTTTATTGTGACACCAAAGCATCAATGTCATGTATCCTAAAGAAGGGAATGCATTT
66 AAAAAAAAATTTTATTGCGACACCAAAGCATCAATGTCATGTATCCTAAAGAAGGGAATGTATTT
** * * * * *
1099404 TGGCTTTTCGGTCTAGAAAAGAATAGAGACTGTTACGAGAATTGATGCTTATCTTATTTAACAGA
131 TGGCTTCCCGATCTAG-AAAGAATAGAGACTATTACGAGAATCGATGCTTGTCTTATTTAACGGA
* * *
1099469 TGAACTTTGATTTTACGAAAAATAGGGTAAAG-AAATATTTCCATGCAAAAGAAAATCATCAATG
195 TGAACTTTGATTTTATGAAAAATAGGGCAAAGAAAATATTTCCATGCAAAAGAAAATTATCAATG
1099533 TTATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
260 TTATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
1099573 GCATCAATGT
Statistics
Matches: 664, Mismatches: 100, Indels: 23
0.84 0.13 0.03
Matches are distributed among these distances:
473 64 0.10
474 130 0.20
475 206 0.31
476 252 0.38
477 12 0.02
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.33
Consensus pattern (473 bp):
ATTATTATGACTATTTATGTTTATCTTATATTAGAGACAAACTTTAATTTTATCAAAAATGGTGG
AAAAAAAAATTTTATTGCGACACCAAAGCATCAATGTCATGTATCCTAAAGAAGGGAATGTATTT
TGGCTTCCCGATCTAGAAAGAATAGAGACTATTACGAGAATCGATGCTTGTCTTATTTAACGGAT
GAACTTTGATTTTATGAAAAATAGGGCAAAGAAAATATTTCCATGCAAAAGAAAATTATCAATGT
TATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACT
AGAACCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAAAATAATTGGAGGGAAAAAAGC
CTATCTTGTGAAACCAAAGCATCAATATCATGTATCCTAATAAGAAAACTACGTTTATGGTCCCT
AATCCTGAAAAGAATGGA
Found at i:1099612 original size:49 final size:49
Alignment explanation
Indices: 1099525--1099621 Score: 122
Period size: 49 Copynumber: 2.0 Consensus size: 49
1099515 AAAAGAAAAT
* * * ***
1099525 CATCAATGTTATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAG
1 CATCAATGTCATGTATCCTAATGAGAAGAATACATTTATAGTGCCTAAG
* *
1099574 CATCAATGTCATGTATCCTAATGAGAAGACTACATTTATTGTGCCTAA
1 CATCAATGTCATGTATCCTAATGAGAAGAATACATTTATAGTGCCTAA
1099622 TCCTAGAATG
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
49 40 1.00
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.35
Consensus pattern (49 bp):
CATCAATGTCATGTATCCTAATGAGAAGAATACATTTATAGTGCCTAAG
Found at i:1100670 original size:475 final size:474
Alignment explanation
Indices: 1099805--1102003 Score: 2469
Period size: 475 Copynumber: 4.7 Consensus size: 474
1099795 GTTTTGAAAA
* * * *
1099805 GAATGTGTTTTGGCTTCCCAATCAAGAAAAGAATGAAGAT-TTTACGAGAATCGATGCTTGTCTT
1 GAATGCGTTTTGGCTTCCCAATCTAGAAAAGAATGGAGATGGTTACGAGAATCGATGCTTGTCTT
* * * * * * *
1099869 ATTTAACGGATGAAGTTTAATTTT-ACGAGAAATAGGGCAAAAAAAATATTTCCATACAAAAGAA
66 ATTTAAGGGATGAACTTTGATTTTAAGGA-AAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAA
* * * ** *
1099933 AATTATCAATATCATTTATCCTACCAAGGAGAATGTGCTTATAGTGTTTAGTCACAAAATGAATG
130 AATCATCAATATCATTTATCCTAACAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
* * * * * * * *
1099998 AAGATCATTACTAGAATCCTTGTTTGTATCAATTAAGGCACGAACTTCGATTTTACAAAAATTGG
195 AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATCGG
* * * * *
1100063 -GGGAAGAAAGCCTTTCTTGCAAAACCAAGGCATCAATATCATCTGTCCTAATA-AGAAGACTA-
260 TGGGAAGAAAGCCTTTCATGCAAAACCAAAGCATCAATATCGTGTATCCT--TAGAGAAGACTAT
* * * * * * *
1100125 CGTTAATGGCGCCTGATCTTGAAAAAAATGGGGATTAGTACGACTATTTATGTTTGCCTTATATA
323 C-TTAATGGCGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTCTTATATA
*
1100190 AGAGACAAACGTTGATTCTATCAAAAACGGT-GAAAAAAAGCTTTTCTTGCAACACCAAAGCATC
387 AGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAAAAAGCTTTTCTTGCAACACCAAAGCATC
*
1100254 AATGCCATGTATCCTAATGAAGG
452 AATGTCATGTATCCTAATGAAGG
* * * * * * *
1100277 GAATGCATTTTGACTTCCCAATCTTGAAAAGAATGGAGATGGTTATGATAATCAATGCTTATCTT
1 GAATGCGTTTTGGCTTCCCAATCTAGAAAAGAATGGAGATGGTTACGAGAATCGATGCTTGTCTT
* * *
1100342 ATTTAAGTGATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGA-TTCTCATGCATTAAGA
66 ATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTC-CATGCA-AAAGA
* ** *
1100406 AAATCATCAAAATCATTTATCCTAGTAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAGT
129 AAATCATCAATATCATTTATCCTAACAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
* * *** * * * *
1100471 GGAGATCGTTTGAAGAATCCATCTTTGTTTCATTTGAGGAACAAACTTAGACTTTACAAAAATCA
194 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATCG
* *
1100536 GTGGGAAGAAAGCCTTTCATGCGAAACCAAAGCATCAGTATCGTGTATCCTGTAGAGAAGACTAT
259 GTGGGAAGAAAGCCTTTCATGCAAAACCAAAGCATCAATATCGTGTATCCT-TAGAGAAGACTAT
* * * *
1100601 ACTT-ATGGCGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTAATGTTTGTCTTATTTA
323 -CTTAATGGCGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTCTTATATA
* * * *
1100665 AGAGACAAACTTTGATTCGATGAAAAATGGTGGAAAAAAAGCTTTTCTTGTC-ACGCCAAAGCAT
387 AGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAAAAAGCTTTTCTTG-CAACACCAAAGCAT
*
1100729 CACTGTCATGTATCCTAATGAAGG
451 CAATGTCATGTATCCTAATGAAGG
* * * *
1100753 GAATGCGTTTTGGCTTCCCAATCTAGAAAAAAATGCAGACT-GTTATGAGAATC-ACTGCTTGCC
1 GAATGCGTTTTGGCTTCCCAATCTAGAAAAGAATGGAGA-TGGTTACGAGAATCGA-TGCTTGTC
* * * *
1100816 TTATTTAACGTATGAACTTTGATTTTACGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGA
64 TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
* ** *
1100881 AAATCATCAATATCATTTATCTTAACAAGGAGAACATGTTTATAGTGCCTAATCATAAAATGAAT
129 AAATCATCAATATCATTTATCCTAACAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
* * * ** * *
1100946 GAAGATCATTTCTAGAACCCATGTTTGTTTCATTTGAGGCATGAACTTTGACTTTACAAAAATTG
194 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATCG
* **
1101011 GTGGAAAAGAAAG-CTTTC-TCGCAAAACCAAAATATCAATA---T-TA----T------G----
259 GTGG-GAAGAAAGCCTTTCAT-GCAAAACCAAAGCATCAATATCGTGTATCCTTAGAGAAGACTA
** * * *
1101056 T-TT-ATGGTTCCTAATCCTAAAAAGAATAAGGATTAGTATGACTATTCATGCTTGTCTTATATA
322 TCTTAATGGCGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTCTTATATA
1101119 AGAGACAAACTTTGATTCTATCAAAAACGGTGGGAAGAAAAA--TATTTCTTGCAACACCAAAGC
387 AGAGACAAACTTTGATTCTATCAAAAACGGT-GGAA-AAAAAGCT-TTTCTTGCAACACCAAAGC
* *
1101182 TTCAATGTCATGTATCCTAATGAATG
449 ATCAATGTCATGTATCCTAATGAAGG
1101208 GAATGCGTTTTGGCTTCCCAATCTAGAAAAGAATGGAGATGGTTACGAGAATCGATGCTTGTCTT
1 GAATGCGTTTTGGCTTCCCAATCTAGAAAAGAATGGAGATGGTTACGAGAATCGATGCTTGTCTT
* * *
1101273 ATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATAG-GAAGGAA
66 ATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCAT-GCAAAAGAA
* * * * * * *
1101337 TATCTTCAACATCATTTATCCTAACGAGGAAAATGTGTTTATGGTGCCTAATCAGAAAATGAATG
130 AATCATCAATATCATTTATCCTAACAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
* * * *
1101402 AAGATCATTACTAGAATCCATATTTGACTCATTTAAGGCAC-AACTTAGACTTTACAAAAATTGG
195 AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATCGG
* * * * * *
1101466 AGGGAGGAAAACCATT-ATTGCAAAACCAAGGCATCAATATCGTGTATCCTAATGAGAAGACTAT
260 TGGGAAGAAAGCCTTTCA-TGCAAAACCAAAGCATCAATATCGTGTATCCTTA-GAGAAGACTAT
* * * * * * *
1101530 GTTAATGGTGCTTGATCCTGAATAGAATAGGGATTAGTATGACTATTCATATATGTCTTATATAA
323 CTTAATGGCGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTCTTATATAA
* * *
1101595 GAGGCAAACTTTGATTCTATCAAAAA-GGTGGAAAGCAAAACCTTTTCTTGCGACACCAAAGCAT
388 GAGACAAACTTTGATTCTATCAAAAACGGTGGAAA--AAAAGCTTTTCTTGCAACACCAAAGCAT
*
1101659 CAATGTCATGTGTCCTAATGAAGG
451 CAATGTCATGTATCCTAATGAAGG
* * * * * *
1101683 GAATGTGTTTTGGCTTCCTAATCTTGAAAAGAATGGAGAAGGTTACGAGAATTGATGATTGTCTT
1 GAATGCGTTTTGGCTTCCCAATCTAGAAAAGAATGGAGATGGTTACGAGAATCGATGCTTGTCTT
* * * *
1101748 ATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAATAGATTTCCATGCTAATGAAA
66 ATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
* ** * * * * * * *
1101813 ATCATTAATATCATTTATCCTAATGAGGAGAATGTGATTGTAGTACCTTATCACAAAATCAGTGG
131 ATCATCAATATCATTTATCCTAACAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
** * **
1101878 AGATCATTAGAAGAATTCATGTTTGTCTCATTTGAGTAACAAACTTAGACTTTACAAAAATCGGT
196 AGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATCGGT
* * * *
1101943 GGGAAAAAAGCCTTTCTTGCAAAACCAAAGAATCAATATCGTGTATCCTGATGAGAAGACT
261 GGGAAGAAAGCCTTTCATGCAAAACCAAAGCATCAATATCGTGTATCCTTA-GAGAAGACT
1102004 GGTCATATCC
Statistics
Matches: 1455, Mismatches: 219, Indels: 102
0.82 0.12 0.06
Matches are distributed among these distances:
453 5 0.00
454 128 0.09
455 247 0.17
456 8 0.01
457 1 0.00
458 2 0.00
460 1 0.00
466 1 0.00
469 1 0.00
471 2 0.00
472 39 0.03
473 65 0.04
474 126 0.09
475 587 0.40
476 236 0.16
477 6 0.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (474 bp):
GAATGCGTTTTGGCTTCCCAATCTAGAAAAGAATGGAGATGGTTACGAGAATCGATGCTTGTCTT
ATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
ATCATCAATATCATTTATCCTAACAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
AGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATCGGT
GGGAAGAAAGCCTTTCATGCAAAACCAAAGCATCAATATCGTGTATCCTTAGAGAAGACTATCTT
AATGGCGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTCTTATATAAGAG
ACAAACTTTGATTCTATCAAAAACGGTGGAAAAAAAGCTTTTCTTGCAACACCAAAGCATCAATG
TCATGTATCCTAATGAAGG
Found at i:1101799 original size:930 final size:933
Alignment explanation
Indices: 1099805--1101982 Score: 2575
Period size: 930 Copynumber: 2.3 Consensus size: 933
1099795 GTTTTGAAAA
* * *
1099805 GAATGTGTTTTGGCTTCCCAATCAAGAAAAGAATGAAG-ATTTTACGAGAATCGATGCTTGTCTT
1 GAATGTGTTTTGGCTTCCCAATCTAGAAAAGAATGAAGAATGTTACGAGAATTGATGCTTGTCTT
* * * * * *
1099869 ATTTAACGGATGAAGTTTAATTTT-ACGAGAAATAGGGCAAAAAAAATATTTCCATACAAAAGAA
66 ATTTAACGGATGAACTTTGATTTTAAGGA-AAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAA
* * * ** *
1099933 AATTATCAATATCATTTATCCTACCAAGGAGAATGTGCTTATAGTGTTTAGTCACAAAATGAATG
130 AATCATCAATATCATTTATCCTAACAAGGAGAATGTGATTATAGTGCCTAATCACAAAATGAATG
* * * * *
1099998 AAGATCATTACTAGAATCCTTGTTTGTATCAATTAAGGCACGAACTTCGATTTTACAAAAATTGG
195 AAGATCATTACTAGAATCCATGTTTGTATCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG
* * *
1100063 -GGGAAGAAAGCCTTTCTTGCAAAACCAAGGCATCAATATCATCTGTCCTAATAAGAAGACTACG
260 TGGAAAGAAAGCCTTTCTTGCAAAACC-A---A--AATATCA-ATAT-CTAAT----AGA-TA--
* * ** * *
1100127 TTAATGGCGCCTGATCTTGAAAAAAATGGGGATTAGTACGACTATTTATGTTTGCCTTATATAAG
310 TTAATGGCGCCTAATCCTGAAAAAAATAAGGATTAGTACGACTATTCATGCTTGCCTTATATAAG
1100192 AGACAAACGTTGATTCTATCAAAAACGGTGAAAAAAAGCTTTTCTTGCAACACCAAAGCATCAAT
375 AGACAAACGTTGATTCTATCAAAAACGGTGAAAAAAA-CTTTTCTTGCAACACCAAAGCATCAAT
*
1100257 GCCATGTATCCTAATGAAGGGAATGCATTTTGACTTCCCAATCTTGAAAAGAATGGAGATGGTTA
439 GCCATGTATCCTAATGAAGGGAATGCATTTTGACTTCCCAATCTAGAAAAGAATGGAGATGGTTA
* * * * *
1100322 TGATAATCAATGCTTATCTTATTTAAGTGATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAA
504 CGAGAATCAATGCTTATCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAA
** *
1100387 AGATTCTCATGCATTAAGAAAATCATCAAAATCATTTATCCTAGTAAGGAGAATGTGTTTATAGT
569 AGATTCTCATGCA-TAAGAAAATCATCAAAATCATTTATCCTAACAAGGAAAATGTGTTTATAGT
* * * ** * ** *
1100452 GCCTAATCACAAAATGAGTGGAGATCGTTTGAAGAATCCATCTTTGTTTCATTTGAGGAACAAAC
633 GCCTAATCACAAAATGAATGAAGATCATTACAAGAATCCATATTTGACTCATTTAAGGAACAAAC
* * * * *
1100517 TTAGACTTTACAAAAATCAGTGGGAAGAAAGCCTTTCATGCGAAACCAAAGCATCAGTATCGTGT
698 TTAGACTTTACAAAAATCAGAGGGAAGAAAACCATTCATGCAAAACCAAAGCATCAATATCGTGT
* * *
1100582 ATCCTGTAGAGAAGACTATACTTATGGCGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTAT
763 ATCCTATAGAGAAGACTATACTTATGGCGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTAT
* * * * *
1100647 TAATGTTTGTCTTATTTAAGAGACAAACTTTGATTCGATGAAAAATGGTGGAAAAAAAGCTTTTC
828 TAATATATGTCTTATATAAGAGACAAACTTTGATTCGATCAAAAATGGTGGAAAAAAACCTTTTC
* *
1100712 TTGTCACGCCAAAGCATCACTGTCATGTATCCTAATGAAGG
893 TTGTCACACCAAAGCATCAATGTCATGTATCCTAATGAAGG
* * * * * * *
1100753 GAATGCGTTTTGGCTTCCCAATCTAGAAAAAAATGCAGACTGTTATGAGAA-TCACTGCTTGCCT
1 GAATGTGTTTTGGCTTCCCAATCTAGAAAAGAATGAAGAATGTTACGAGAATTGA-TGCTTGTCT
* * *
1100817 TATTTAACGTATGAACTTTGATTTTACGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAA
65 TATTTAACGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAA
* ** * *
1100882 AATCATCAATATCATTTATCTTAACAAGGAGAACATGTTTATAGTGCCTAATCATAAAATGAATG
130 AATCATCAATATCATTTATCCTAACAAGGAGAATGTGATTATAGTGCCTAATCACAAAATGAATG
* * * * *
1100947 AAGATCATTTCTAGAACCCATGTTTGTTTCATTTGAGGCATGAACTTTGACTTTACAAAAATTGG
195 AAGATCATTACTAGAATCCATGTTTGTATCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG
* **
1101012 TGGAAAAGAAAG-CTTTCTCGCAAAACCAAAATATCAATAT-T-AT-G-T-TT-ATGGTTCCTAA
260 TGG-AAAGAAAGCCTTTCTTGCAAAACCAAAATATCAATATCTAATAGATATTAATGGCGCCTAA
* * *
1101070 TCCT-AAAAAGAATAAGGATTAGTATGACTATTCATGCTTGTCTTATATAAGAGACAAACTTTGA
324 TCCTGAAAAA-AATAAGGATTAGTACGACTATTCATGCTTGCCTTATATAAGAGACAAACGTTGA
* *
1101134 TTCTATCAAAAACGGTGGGAAGAAAAA-TATTTCTTGCAACACCAAAGCTTCAATGTCATGTATC
388 TTCTATCAAAAACGGT--GAA-AAAAACT-TTTCTTGCAACACCAAAGCATCAATGCCATGTATC
* * * *
1101198 CTAATGAATGGAATGCGTTTTGGCTTCCCAATCTAGAAAAGAATGGAGATGGTTACGAGAATCGA
449 CTAATGAAGGGAATGCATTTTGACTTCCCAATCTAGAAAAGAATGGAGATGGTTACGAGAATCAA
*
1101263 TGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATT-TCCA
514 TGCTTATCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTCT-CA
* * * * * * *
1101327 TAGGA-AGGAATATCTTCAACATCATTTATCCTAACGAGGAAAATGTGTTTATGGTGCCTAATCA
578 T-GCATAAGAAAATCATCAAAATCATTTATCCTAACAAGGAAAATGTGTTTATAGTGCCTAATCA
* * *
1101391 GAAAATGAATGAAGATCATTACTAGAATCCATATTTGACTCATTTAAGGCAC-AACTTAGACTTT
642 CAAAATGAATGAAGATCATTACAAGAATCCATATTTGACTCATTTAAGGAACAAACTTAGACTTT
** * *
1101455 ACAAAAATTGGAGGGAGGAAAACCATT-ATTGCAAAACCAAGGCATCAATATCGTGTATCCTA-A
707 ACAAAAATCAGAGGGAAGAAAACCATTCA-TGCAAAACCAAAGCATCAATATCGTGTATCCTATA
* * * * * *
1101518 TGAGAAGACTAT-GTTAATGGTGCTTGATCCTGAATAGAATAGGGATTAGTATGACTATTCATAT
771 -GAGAAGACTATACTT-ATGGCGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTAATAT
* *
1101582 ATGTCTTATATAAGAGGCAAACTTTGATTCTATCAAAAA-GGTGGAAAGCAAAACCTTTTCTTG-
834 ATGTCTTATATAAGAGACAAACTTTGATTCGATCAAAAATGGTGGAAA--AAAACCTTTTCTTGT
*
1101645 CGACACCAAAGCATCAATGTCATGTGTCCTAATGAAGG
897 C-ACACCAAAGCATCAATGTCATGTATCCTAATGAAGG
* * * * *
1101683 GAATGTGTTTTGGCTTCCTAATCTTGAAAAGAATGGAGAAGGTTACGAGAATTGATGATTGTCTT
1 GAATGTGTTTTGGCTTCCCAATCTAGAAAAGAATGAAGAATGTTACGAGAATTGATGCTTGTCTT
* * * * *
1101748 ATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAATAGATTTCCATGCTAATGAAA
66 ATTTAACGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
* ** * * * * * *
1101813 ATCATTAATATCATTTATCCTAATGAGGAGAATGTGATTGTAGTACCTTATCACAAAATCAGTGG
131 ATCATCAATATCATTTATCCTAACAAGGAGAATGTGATTATAGTGCCTAATCACAAAATGAATGA
** * * ** * *
1101878 AGATCATTAGAAGAATTCATGTTTGTCTCATTTGAGTAACAAACTTAGACTTTACAAAAATCGGT
196 AGATCATTACTAGAATCCATGTTTGTATCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT
1101943 GGGAAA-AAAGCCTTTCTTGCAAAACCAAAGA-ATCAATATC
261 -GGAAAGAAAGCCTTTCTTGCAAAACCAAA-ATATCAATATC
1101983 GTGTATCCTG
Statistics
Matches: 1045, Mismatches: 162, Indels: 63
0.82 0.13 0.05
Matches are distributed among these distances:
928 17 0.02
929 226 0.22
930 380 0.36
931 158 0.15
932 7 0.01
933 1 0.00
935 1 0.00
940 2 0.00
941 1 0.00
943 2 0.00
944 7 0.01
946 1 0.00
948 35 0.03
949 182 0.17
950 18 0.02
951 7 0.01
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (933 bp):
GAATGTGTTTTGGCTTCCCAATCTAGAAAAGAATGAAGAATGTTACGAGAATTGATGCTTGTCTT
ATTTAACGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
ATCATCAATATCATTTATCCTAACAAGGAGAATGTGATTATAGTGCCTAATCACAAAATGAATGA
AGATCATTACTAGAATCCATGTTTGTATCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT
GGAAAGAAAGCCTTTCTTGCAAAACCAAAATATCAATATCTAATAGATATTAATGGCGCCTAATC
CTGAAAAAAATAAGGATTAGTACGACTATTCATGCTTGCCTTATATAAGAGACAAACGTTGATTC
TATCAAAAACGGTGAAAAAAACTTTTCTTGCAACACCAAAGCATCAATGCCATGTATCCTAATGA
AGGGAATGCATTTTGACTTCCCAATCTAGAAAAGAATGGAGATGGTTACGAGAATCAATGCTTAT
CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTCTCATGCATAAG
AAAATCATCAAAATCATTTATCCTAACAAGGAAAATGTGTTTATAGTGCCTAATCACAAAATGAA
TGAAGATCATTACAAGAATCCATATTTGACTCATTTAAGGAACAAACTTAGACTTTACAAAAATC
AGAGGGAAGAAAACCATTCATGCAAAACCAAAGCATCAATATCGTGTATCCTATAGAGAAGACTA
TACTTATGGCGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTAATATATGTCTTATATA
AGAGACAAACTTTGATTCGATCAAAAATGGTGGAAAAAAACCTTTTCTTGTCACACCAAAGCATC
AATGTCATGTATCCTAATGAAGG
Found at i:1103669 original size:54 final size:54
Alignment explanation
Indices: 1103592--1103696 Score: 140
Period size: 54 Copynumber: 1.9 Consensus size: 54
1103582 CACCTTTTCC
** *
1103592 TTTTAAGTCAACAACTCGATGGCACCCTTTTAAGTTTACAACTCCGTGGCATCT
1 TTTTAAGTCAACAACTCGATGGCACCCTTTTAAGTCCACAACTCCATGGCATCT
* * *
1103646 TTTTAATTCCACAACTTCG-TGGCACCTTTTTAAGTCCACAACTCCATGGCA
1 TTTTAAGTCAACAAC-TCGATGGCACCCTTTTAAGTCCACAACTCCATGGCA
1103697 CCCTTCAAAG
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
54 41 0.93
55 3 0.07
ACGTcount: A:0.26, C:0.28, G:0.13, T:0.33
Consensus pattern (54 bp):
TTTTAAGTCAACAACTCGATGGCACCCTTTTAAGTCCACAACTCCATGGCATCT
Found at i:1103708 original size:27 final size:27
Alignment explanation
Indices: 1103590--1103701 Score: 125
Period size: 27 Copynumber: 4.1 Consensus size: 27
1103580 GGCACCTTTT
* *
1103590 CCTTTTAAGTCAACAACTCGATGGCAC
1 CCTTTTAAGTCCACAACTCCATGGCAC
** * *
1103617 CCTTTTAAGTTTACAACTCCGTGGCAT
1 CCTTTTAAGTCCACAACTCCATGGCAC
* * * *
1103644 CTTTTTAATTCCACAACTTCGTGGCAC
1 CCTTTTAAGTCCACAACTCCATGGCAC
*
1103671 CTTTTTAAGTCCACAACTCCATGGCAC
1 CCTTTTAAGTCCACAACTCCATGGCAC
1103698 CCTT
1 CCTT
1103702 CAAAGTCTAT
Statistics
Matches: 70, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 70 1.00
ACGTcount: A:0.24, C:0.30, G:0.12, T:0.33
Consensus pattern (27 bp):
CCTTTTAAGTCCACAACTCCATGGCAC
Found at i:1103809 original size:33 final size:32
Alignment explanation
Indices: 1103764--1103843 Score: 106
Period size: 33 Copynumber: 2.5 Consensus size: 32
1103754 GCATCTATTC
*
1103764 TCTAAGTCCACAATTCCCTGGAACCTTTTCCT
1 TCTAAGTCCACAACTCCCTGGAACCTTTTCCT
* * *
1103796 TTTGAAGTCCACAACTCCGTGGCACCTTTTCCT
1 TCT-AAGTCCACAACTCCCTGGAACCTTTTCCT
*
1103829 TCTAAGTCCATAACT
1 TCTAAGTCCACAACT
1103844 TCGTGGCACC
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
32 13 0.32
33 28 0.68
ACGTcount: A:0.23, C:0.33, G:0.11, T:0.34
Consensus pattern (32 bp):
TCTAAGTCCACAACTCCCTGGAACCTTTTCCT
Found at i:1103874 original size:34 final size:35
Alignment explanation
Indices: 1103789--1103892 Score: 119
Period size: 34 Copynumber: 3.1 Consensus size: 35
1103779 CCCTGGAACC
* * *
1103789 TTTTCCTTTTGAAGTCCACAACTCCGTGGCA-CC--
1 TTTTCCTTCT-AAGTCCATAACTTCGTGGCACCCTT
1103822 TTTTCCTTCTAAGTCCATAACTTCGTGGCACCCTT
1 TTTTCCTTCTAAGTCCATAACTTCGTGGCACCCTT
*
1103857 TTTTCTTTC-AAGTCCATAAC-TCTGTGGCACCCTT
1 TTTTCCTTCTAAGTCCATAACTTC-GTGGCACCCTT
1103891 TT
1 TT
1103893 AAGTCCACAA
Statistics
Matches: 63, Mismatches: 4, Indels: 7
0.85 0.05 0.09
Matches are distributed among these distances:
32 18 0.29
33 13 0.21
34 24 0.38
35 8 0.13
ACGTcount: A:0.17, C:0.31, G:0.12, T:0.39
Consensus pattern (35 bp):
TTTTCCTTCTAAGTCCATAACTTCGTGGCACCCTT
Found at i:1103899 original size:27 final size:27
Alignment explanation
Indices: 1103861--1103915 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
1103851 ACCCTTTTTT
* **
1103861 CTTTCAAGTCCATAACTCTGTGGCACC
1 CTTTCAAGTCCACAACTCCATGGCACC
*
1103888 CTTTTAAGTCCACAACTCCATGGCACC
1 CTTTCAAGTCCACAACTCCATGGCACC
1103915 C
1 C
1103916 CCTTCTAAAG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.24, C:0.36, G:0.13, T:0.27
Consensus pattern (27 bp):
CTTTCAAGTCCACAACTCCATGGCACC
Found at i:1104025 original size:52 final size:52
Alignment explanation
Indices: 1103947--1104786 Score: 410
Period size: 52 Copynumber: 16.9 Consensus size: 52
1103937 CGGTGGCAAC
* * * * * **
1103947 CCTTCTAAGCCCAATATCGCTAGCCTTGAATTAGCACATTGGTATCTTTTTCA
1 CCTT-TAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTACCA
* * * * *
1104000 TCTTTAAGTCCAATATCACTGGCCTTAAATTAGCATATTGGCACCTTTACCA
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTACCA
* * *
1104052 CCTTTAAGTCCAATATCG-TCGGCCTTAAATCAGTATATTGG---------CA
1 CCTTTAAGTCCAATATCGCT-GGCCTTGAATCAGCACATTGGCACCTTTACCA
** * ** ***
1104095 CCTTTAAGTCCAATATCATTGGCCTTGAATCAGCATATTGGTGCCTTGGTCA
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTACCA
* * * *
1104147 TCTTTAAATCCAATGTCGCTGGCCTTGAATCAG--CA----CA--TTT-GCA
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTACCA
* * *
1104190 CCTTTAAGTGCAATATCGTGCTGGCCTTGAATCAACATATTGGCACCTTTACCA
1 CCTTTAAGTCCAATATC--GCTGGCCTTGAATCAGCACATTGGCACCTTTACCA
* * *
1104244 CTTTTAAGTCCAATATCGCTGGCCTTGAATCAACATATTGGCACCTTTACCA
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTACCA
* * * *
1104296 TCTTCAAG-CCTAACATCGCTGGCCTTGAATTAGCACATTGG---------CA
1 CCTTTAAGTCC-AATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTACCA
* * * * * ** **
1104339 CCTTTAAGTCCAATATCGTTAGCCTTGAATTAGCATATTAGCGTCTTTGTCA
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTACCA
* * * * *
1104391 TCTTTAAGTCCAATGTCACTGACCTTGAATCAGCACATTAGCACCTTTA--A
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTACCA
* * * * * *
1104441 -C------TCCAATATCGCTAGCTTTGAATTAGCATATTGGCTCTTTTACCA
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTACCA
* *
1104486 CCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCCGTTACCA
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCA-CCTTTACCA
* * * ** * *
1104539 TCTTTAAGTCTAATGTCGCTGGCCTTGAATCAATACATTAGCACC-TT--CG
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTACCA
* * * * * * *
1104588 TCTTGAGGACCGATATCG-TGGCCTTGAATCAGCATATTGGCATCTTTA--A
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTACCA
* * * * * *
1104637 CATTCCT-AGCCCAATGTCGCTAGCCTTGAATCAGCACATTGGC-CTTTTTCTCA
1 CCTT--TAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTAC-CA
* * * * ** * *
1104690 TCTTCAAGTCTAATGTCATTGG-CTGTGAATCAGCACATT-G-ACATTCTTCGCA
1 CCTTTAAGTCCAATATCGCTGGCCT-TGAATCAGCACATTGGCACCTT-TAC-CA
* * * *
1104742 TCTTTAAGCCCAATATTGCTGGCCTTGAATCAGCATATTGGCACC
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACC
1104787 ATTATCATTC
Statistics
Matches: 601, Mismatches: 128, Indels: 115
0.71 0.15 0.14
Matches are distributed among these distances:
43 117 0.19
44 5 0.01
45 16 0.03
46 1 0.00
47 1 0.00
48 21 0.03
49 18 0.03
50 13 0.02
51 34 0.06
52 299 0.50
53 57 0.09
54 19 0.03
ACGTcount: A:0.25, C:0.26, G:0.16, T:0.33
Consensus pattern (52 bp):
CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTACCA
Found at i:1104111 original size:43 final size:43
Alignment explanation
Indices: 1104050--1104135 Score: 136
Period size: 43 Copynumber: 2.0 Consensus size: 43
1104040 GCACCTTTAC
* *
1104050 CACCTTTAAGTCCAATATCGTCGGCCTTAAATCAGTATATTGG
1 CACCTTTAAGTCCAATATCATCGGCCTTAAATCAGCATATTGG
* *
1104093 CACCTTTAAGTCCAATATCATTGGCCTTGAATCAGCATATTGG
1 CACCTTTAAGTCCAATATCATCGGCCTTAAATCAGCATATTGG
1104136 TGCCTTGGTC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.33
Consensus pattern (43 bp):
CACCTTTAAGTCCAATATCATCGGCCTTAAATCAGCATATTGG
Found at i:1104120 original size:22 final size:22
Alignment explanation
Indices: 1104052--1104120 Score: 63
Period size: 22 Copynumber: 3.2 Consensus size: 22
1104042 ACCTTTACCA
* *
1104052 CCTTTAAGTCCAATATCGTCGG
1 CCTTTAAGTCCAATATCATTGG
* *
1104074 CC-TTAAAT-CAGTAT-ATTGG
1 CCTTTAAGTCCAATATCATTGG
1104093 CACCTTTAAGTCCAATATCATTGG
1 --CCTTTAAGTCCAATATCATTGG
1104117 CCTT
1 CCTT
1104121 GAATCAGCAT
Statistics
Matches: 36, Mismatches: 6, Indels: 10
0.69 0.12 0.19
Matches are distributed among these distances:
19 3 0.08
20 5 0.14
21 7 0.19
22 11 0.31
23 5 0.14
24 5 0.14
ACGTcount: A:0.26, C:0.25, G:0.14, T:0.35
Consensus pattern (22 bp):
CCTTTAAGTCCAATATCATTGG
Found at i:1104171 original size:95 final size:94
Alignment explanation
Indices: 1104001--1104292 Score: 361
Period size: 95 Copynumber: 3.1 Consensus size: 94
1103991 TCTTTTTCAT
* * *
1104001 CTTTAAGTCCAATATCACTGGCCTTAAATTAGCATATTGGCACCTTTACCACCTTTAAGTCCAAT
1 CTTTAAGTCCAATATCATTGGCCTTGAATCAGCATATTGGCACCTTTACCA-CTTTAAGTCCAAT
* *
1104066 ATCG-TCGGCCTTAAATCAGTATATTGGCAC
65 ATCGCT-GGCCTTGAATCAGCATATTGGCAC
** *** *
1104096 CTTTAAGTCCAATATCATTGGCCTTGAATCAGCATATTGGTGCCTTGGTCATCTTTAAATCCAAT
1 CTTTAAGTCCAATATCATTGGCCTTGAATCAGCATATTGGCACCTTTACCA-CTTTAAGTCCAAT
* * *
1104161 GTCGCTGGCCTTGAATCAGCACATTTGCAC
65 ATCGCTGGCCTTGAATCAGCATATTGGCAC
* * *
1104191 CTTTAAGTGCAATATCGTGCTGGCCTTGAATCAACATATTGGCACCTTTACCACTTTTAAGTCCA
1 CTTTAAGTCCAATATCAT--TGGCCTTGAATCAGCATATTGGCACCTTTACCAC-TTTAAGTCCA
*
1104256 ATATCGCTGGCCTTGAATCAACATATTGGCAC
63 ATATCGCTGGCCTTGAATCAGCATATTGGCAC
1104288 CTTTA
1 CTTTA
1104293 CCATCTTCAA
Statistics
Matches: 165, Mismatches: 28, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
95 94 0.57
96 2 0.01
97 69 0.42
ACGTcount: A:0.26, C:0.25, G:0.16, T:0.33
Consensus pattern (94 bp):
CTTTAAGTCCAATATCATTGGCCTTGAATCAGCATATTGGCACCTTTACCACTTTAAGTCCAATA
TCGCTGGCCTTGAATCAGCATATTGGCAC
Found at i:1104283 original size:149 final size:147
Alignment explanation
Indices: 1104096--1104437 Score: 382
Period size: 149 Copynumber: 2.3 Consensus size: 147
1104086 ATATTGGCAC
* * ** ** *
1104096 CTTTAAGTCCAATATCATTGGCCTTGAATCAGCATATTGGTGCCTTGGTCATCTTTAAATCC-AA
1 CTTTAAGTCCAATATCACTGGCCTTGAATCAACATATTGGCACCTTGACCATC-TTAAAGCCTAA
** * * *
1104160 TGTCGCTGGCCTTGAATCAGCACATTTGCACCTTTAAGTGCAATATCGTGCTGGCCTTGAATCAA
65 CATCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGT--TAGCCTTGAATCAA
*
1104225 CATATTGGCACCTTTACCA-
128 CATATTAGCACCTTTACCAT
* * *
1104244 CTTTTAAGTCCAATATCGCTGGCCTTGAATCAACATATTGGCACCTTTACCATCTTCAAGCCTAA
1 C-TTTAAGTCCAATATCACTGGCCTTGAATCAACATATTGGCACCTTGACCATCTTAAAGCCTAA
* * *
1104309 CATCGCTGGCCTTGAATTAGCACATTGGCACCTTTAAGTCCAATATCGTTAGCCTTGAATTAGCA
65 CATCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGTTAGCCTTGAATCAACA
** **
1104374 TATTAGCGTCTTTGTCAT
130 TATTAGCACCTTTACCAT
* * * * *
1104392 CTTTAAGTCCAATGTCACTGACCTTGAATCAGCACATTAGCACCTT
1 CTTTAAGTCCAATATCACTGGCCTTGAATCAACATATTGGCACCTT
1104438 TAACTCCAAT
Statistics
Matches: 162, Mismatches: 29, Indels: 7
0.82 0.15 0.04
Matches are distributed among these distances:
147 64 0.40
148 8 0.05
149 90 0.56
ACGTcount: A:0.26, C:0.25, G:0.16, T:0.33
Consensus pattern (147 bp):
CTTTAAGTCCAATATCACTGGCCTTGAATCAACATATTGGCACCTTGACCATCTTAAAGCCTAAC
ATCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGTTAGCCTTGAATCAACAT
ATTAGCACCTTTACCAT
Found at i:1104405 original size:244 final size:242
Alignment explanation
Indices: 1103957--1104585 Score: 776
Period size: 244 Copynumber: 2.6 Consensus size: 242
1103947 CCTTCTAAGC
* * * * * ** * *
1103957 CCAATATCGCTAGCCTTGAATTAGCACATTGGTATCTTTTTCATCTTTAAGTCCAATATCACTGG
1 CCAATATCGCTAGCCTTGAATCAACATATTGGCACCTTTACCACCTTTAAGTCCAATATCGCTGG
* * * *
1104022 CCTTAAATTAGCATATTGGCACCTTTACCACCTTTAAGTCC-AATATCG-TCGGCCTTAAATCAG
66 CCTTGAATCAGCATATTGGCACCTTTACCATCTTTAAG-CCTAATATCGCT-GGCCTTGAATCAG
* * * * *
1104085 TATATTGGCACCTTTAAGTCCAATATCATTGGCCTTGAATCAGCATATTGGTGCCTTGGTCATCT
129 CACATTGGCACCTTTAAGTCCAATATCATTAGCCTTGAATCAGCATATTAGCGCCTTGGTCATCT
* * * *
1104150 TTAAATCCAATGTCGCTGGCCTTGAATCAGCACATTTGCACCTTTAAGT
194 TTAAATCCAATGTCACTGACCTTGAATCAGCACATTAGCACCTTTAACT
* * *
1104199 GCAATATCGTGCTGGCCTTGAATCAACATATTGGCACCTTTACCACTTTTAAGTCCAATATCGCT
1 CCAATATC--GCTAGCCTTGAATCAACATATTGGCACCTTTACCACCTTTAAGTCCAATATCGCT
* * * *
1104264 GGCCTTGAATCAACATATTGGCACCTTTACCATCTTCAAGCCTAACATCGCTGGCCTTGAATTAG
64 GGCCTTGAATCAGCATATTGGCACCTTTACCATCTTTAAGCCTAATATCGCTGGCCTTGAATCAG
* * * *
1104329 CACATTGGCACCTTTAAGTCCAATATCGTTAGCCTTGAATTAGCATATTAGCGTCTTTGTCATCT
129 CACATTGGCACCTTTAAGTCCAATATCATTAGCCTTGAATCAGCATATTAGCGCCTTGGTCATCT
*
1104394 TTAAGTCCAATGTCACTGACCTTGAATCAGCACATTAGCACCTTTAACT
194 TTAAATCCAATGTCACTGACCTTGAATCAGCACATTAGCACCTTTAACT
* * * * * *
1104443 CCAATATCGCTAGCTTTGAATTAGCATATTGGCTCTTTTACCACCTTTAAGTCCAATGTCGCTGG
1 CCAATATCGCTAGCCTTGAATCAACATATTGGCACCTTTACCACCTTTAAGTCCAATATCGCTGG
* * * * **
1104508 CCTTGAATCAGCACATTGGCACCCGTTACCATCTTTAAGTCTAATGTCGCTGGCCTTGAATCAAT
66 CCTTGAATCAGCATATTGGCA-CCTTTACCATCTTTAAGCCTAATATCGCTGGCCTTGAATCAGC
*
1104573 ACATTAGCACCTT
130 ACATTGGCACCTT
1104586 CGTCTTGAGG
Statistics
Matches: 328, Mismatches: 54, Indels: 9
0.84 0.14 0.02
Matches are distributed among these distances:
242 75 0.23
243 49 0.15
244 203 0.62
245 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.15, T:0.33
Consensus pattern (242 bp):
CCAATATCGCTAGCCTTGAATCAACATATTGGCACCTTTACCACCTTTAAGTCCAATATCGCTGG
CCTTGAATCAGCATATTGGCACCTTTACCATCTTTAAGCCTAATATCGCTGGCCTTGAATCAGCA
CATTGGCACCTTTAAGTCCAATATCATTAGCCTTGAATCAGCATATTAGCGCCTTGGTCATCTTT
AAATCCAATGTCACTGACCTTGAATCAGCACATTAGCACCTTTAACT
Found at i:1104417 original size:95 final size:93
Alignment explanation
Indices: 1104246--1104530 Score: 347
Period size: 95 Copynumber: 3.0 Consensus size: 93
1104236 CTTTACCACT
* * * * * * *
1104246 TTTAAGTCCAATATCGCTGGCCTTGAATCAACATATTGGCACCTTTACCATCTTCAAG-CCTAAC
1 TTTAAGTCCAATATCGCTAGCCTTGAATTAGCATATTGGC-TCTTT-TCATCTTTAAGTCC-AAT
* *
1104310 ATCGCTGGCCTTGAATTAGCACATTGGCACC
63 GTCGCTGGCCTTGAATCAGCACATTGGCACC
* *
1104341 TTTAAGTCCAATATCGTTAGCCTTGAATTAGCATATTAGCGTCTTTGTCATCTTTAAGTCCAATG
1 TTTAAGTCCAATATCGCTAGCCTTGAATTAGCATATTGGC-TCTTT-TCATCTTTAAGTCCAATG
* * *
1104406 TCACTGACCTTGAATCAGCACATTAGCACC
64 TCGCTGGCCTTGAATCAGCACATTGGCACC
* * *
1104436 TTTAACTCCAATATCGCTAGCTTTGAATTAGCATATTGGCTCTTTTACCACCTTTAAGTCCAATG
1 TTTAAGTCCAATATCGCTAGCCTTGAATTAGCATATTGGCTCTTTT--CATCTTTAAGTCCAATG
1104501 TCGCTGGCCTTGAATCAGCACATTGGCACC
64 TCGCTGGCCTTGAATCAGCACATTGGCACC
1104531 CGTTACCATC
Statistics
Matches: 163, Mismatches: 24, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
93 1 0.01
94 5 0.03
95 155 0.95
96 2 0.01
ACGTcount: A:0.26, C:0.26, G:0.15, T:0.33
Consensus pattern (93 bp):
TTTAAGTCCAATATCGCTAGCCTTGAATTAGCATATTGGCTCTTTTCATCTTTAAGTCCAATGTC
GCTGGCCTTGAATCAGCACATTGGCACC
Found at i:1104739 original size:152 final size:153
Alignment explanation
Indices: 1104389--1104784 Score: 363
Period size: 148 Copynumber: 2.6 Consensus size: 153
1104379 GCGTCTTTGT
* * * * **
1104389 CATCTTTAAGTCCAATGTCACTGACCTTGAATCAGCACATTAGCA-C--C--T-TT-AACTCCAA
1 CATCTTCAAGTCTAATGTCACTGGCCTTGAATCAACACATTAGCACCTTCGATCTTGAAGACCAA
* * * * * *
1104447 TATCGCTAGCTTTGAATTAGCATATTGGC-TCTTTTACCA--CCTTTAAGTCCAATGTCGCTGGC
66 TATCGCTGGCCTTGAATCAGCATATTGGCATC-TTTAACATTCC--T-AGCCCAATGTCGCTAGC
1104509 CTTGAATCAGCACATTGGCACCCGTTAC
127 CTTGAATCAGCACATTGG-ACCCGTTAC
* * * * *
1104537 CATCTTTAAGTCTAATGTCGCTGGCCTTGAATCAATACATTAGCACCTTCG-TCTTGAGGACCGA
1 CATCTTCAAGTCTAATGTCACTGGCCTTGAATCAACACATTAGCACCTTCGATCTTGAAGACCAA
1104601 TATCG-TGGCCTTGAATCAGCATATTGGCATCTTTAACATTCCTAGCCCAATGTCGCTAGCCTTG
66 TATCGCTGGCCTTGAATCAGCATATTGGCATCTTTAACATTCCTAGCCCAATGTCGCTAGCCTTG
** *
1104665 AATCAGCACATTGG-CCTTTTTC
131 AATCAGCACATTGGACCCGTTAC
* * * *
1104687 TCATCTTCAAGTCTAATGTCATTGG-CTGTGAATCAGCACATT-GACATTCTTCGCATCTTTAAG
1 -CATCTTCAAGTCTAATGTCACTGGCCT-TGAATCAACACATTAG-CA-CCTTCG-ATCTTGAAG
* *
1104750 CCCAATATTGCTGGCCTTGAATCAGCATATTGGCA
61 ACCAATATCGCTGGCCTTGAATCAGCATATTGGCA
1104785 CCATTATCAT
Statistics
Matches: 203, Mismatches: 29, Indels: 25
0.79 0.11 0.10
Matches are distributed among these distances:
148 40 0.20
149 1 0.00
150 8 0.04
151 36 0.18
152 39 0.19
153 29 0.14
154 24 0.12
155 26 0.13
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.33
Consensus pattern (153 bp):
CATCTTCAAGTCTAATGTCACTGGCCTTGAATCAACACATTAGCACCTTCGATCTTGAAGACCAA
TATCGCTGGCCTTGAATCAGCATATTGGCATCTTTAACATTCCTAGCCCAATGTCGCTAGCCTTG
AATCAGCACATTGGACCCGTTAC
Found at i:1104826 original size:61 final size:61
Alignment explanation
Indices: 1104731--1104869 Score: 199
Period size: 61 Copynumber: 2.3 Consensus size: 61
1104721 AGCACATTGA
* * *
1104731 CATTCTTCGCATCTTTAAGCCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCATTAT
1 CATTCTTCTCATCTTTAAGCCCAATATCGCTGGCCCTGAATCAGCATATTGGCACCATTAT
* * * *
1104792 CATTCTTCTCATATTTAGGCCCAATATCGCTGGCCCTGAATCAGCATATTGGCATCTTTAT
1 CATTCTTCTCATCTTTAAGCCCAATATCGCTGGCCCTGAATCAGCATATTGGCACCATTAT
1104853 CACTT-TTCTCATCTTTA
1 CA-TTCTTCTCATCTTTA
1104870 TCATCTATAA
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
61 67 0.97
62 2 0.03
ACGTcount: A:0.23, C:0.27, G:0.13, T:0.37
Consensus pattern (61 bp):
CATTCTTCTCATCTTTAAGCCCAATATCGCTGGCCCTGAATCAGCATATTGGCACCATTAT
Found at i:1106518 original size:34 final size:33
Alignment explanation
Indices: 1106471--1106535 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 33
1106461 CTTTCAAATC
* *
1106471 TTTTTCCAAAAGTCCATGACTTAGTGGCATCAT
1 TTTTTCCAAAAGTCCACGACTCAGTGGCATCAT
*
1106504 TTTTCTCCCAAAGTCCACGACTCAGTGGCATC
1 TTTT-TCCAAAAGTCCACGACTCAGTGGCATC
1106536 TCTTCTTTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
33 4 0.14
34 24 0.86
ACGTcount: A:0.25, C:0.28, G:0.15, T:0.32
Consensus pattern (33 bp):
TTTTTCCAAAAGTCCACGACTCAGTGGCATCAT
Found at i:1106696 original size:27 final size:27
Alignment explanation
Indices: 1106570--1106690 Score: 161
Period size: 27 Copynumber: 4.5 Consensus size: 27
1106560 GGCACCTTTT
*
1106570 CCTTTTAAGTCCACAACTATGTGGCAC
1 CCTTTTAAGTCCACAACTCTGTGGCAC
** *
1106597 CCTTTTAAGTCCACAACTCCATGGCTC
1 CCTTTTAAGTCCACAACTCTGTGGCAC
1106624 CCTTTTAAGTCCACAACTCTGTGGCAC
1 CCTTTTAAGTCCACAACTCTGTGGCAC
* * *
1106651 CTTTTTACGTCCATAACTCTGTGGCAC
1 CCTTTTAAGTCCACAACTCTGTGGCAC
**
1106678 CCTTCAAAGTCCA
1 CCTTTTAAGTCCA
1106691 TGACTCAATG
Statistics
Matches: 80, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 80 1.00
ACGTcount: A:0.23, C:0.33, G:0.13, T:0.31
Consensus pattern (27 bp):
CCTTTTAAGTCCACAACTCTGTGGCAC
Found at i:1106702 original size:81 final size:84
Alignment explanation
Indices: 1106512--1106711 Score: 228
Period size: 81 Copynumber: 2.4 Consensus size: 84
1106502 ATTTTTCTCC
*
1106512 CAAAGTCCACGACTCAGTGGCATCTCTTCTTTAAGTCCACAACTTCGTGGCACCTTTTCCTTTTA
1 CAAAGTCCACGACTCAATGGCATC-CTT-TTTAAGTCCACAACTTCGTGGCACC--TT-CTTTTA
1106577 AGTCCACAACTATGTGGCACCCTT
61 AGTCCACAACTATGTGGCACCCTT
** * * * *
1106601 TTAAGTCCACAACTCCATGGC-TCCCTTTTAAGTCCACAAC-TCTGTGGCACC-T-TTTTACGTC
1 CAAAGTCCACGACTCAATGGCATCCTTTTTAAGTCCACAACTTC-GTGGCACCTTCTTTTAAGTC
* *
1106662 CATAACTCTGTGGCACCCTT
65 CACAACTATGTGGCACCCTT
*
1106682 CAAAGTCCATGACTCAATGGCATCCTTTTT
1 CAAAGTCCACGACTCAATGGCATCCTTTTT
1106712 CTTCCAAGTC
Statistics
Matches: 94, Mismatches: 15, Indels: 11
0.78 0.12 0.09
Matches are distributed among these distances:
81 42 0.45
82 7 0.07
83 1 0.01
85 2 0.02
86 22 0.23
87 2 0.02
88 2 0.02
89 16 0.17
ACGTcount: A:0.23, C:0.32, G:0.14, T:0.32
Consensus pattern (84 bp):
CAAAGTCCACGACTCAATGGCATCCTTTTTAAGTCCACAACTTCGTGGCACCTTCTTTTAAGTCC
ACAACTATGTGGCACCCTT
Found at i:1106815 original size:35 final size:35
Alignment explanation
Indices: 1106769--1106840 Score: 117
Period size: 35 Copynumber: 2.1 Consensus size: 35
1106759 TTCTGGCACC
1106769 TTTTCCTTTTAAGACCACAACTCCATGGCACCCTT
1 TTTTCCTTTTAAGACCACAACTCCATGGCACCCTT
* * *
1106804 TTTTCCTTTTAAGTCTACAACTCCATGGCTCCCTT
1 TTTTCCTTTTAAGACCACAACTCCATGGCACCCTT
1106839 TT
1 TT
1106841 AAGTCCATAA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.19, C:0.32, G:0.08, T:0.40
Consensus pattern (35 bp):
TTTTCCTTTTAAGACCACAACTCCATGGCACCCTT
Found at i:1106906 original size:34 final size:32
Alignment explanation
Indices: 1106514--1106926 Score: 154
Period size: 27 Copynumber: 13.6 Consensus size: 32
1106504 TTTTCTCCCA
* *
1106514 AAGTCCACGACT-CAGTGGCATCTCTT-C-TTT
1 AAGTCCACAACTCCA-TGGCATCTTTTCCTTTT
* * *
1106544 AAGTCCACAACTTCGTGGCACCTTTTCCTTTT
1 AAGTCCACAACTCCATGGCATCTTTTCCTTTT
***
1106576 AAGTCCACAACTATGTGGCA-C----CCTTTT
1 AAGTCCACAACTCCATGGCATCTTTTCCTTTT
1106603 AAGTCCACAACTCCATGGC-TC----CCTTTT
1 AAGTCCACAACTCCATGGCATCTTTTCCTTTT
** *
1106630 AAGTCCACAACTCTGTGGCA-C----CTTTTT
1 AAGTCCACAACTCCATGGCATCTTTTCCTTTT
* * ** **
1106657 ACGTCCATAACTCTGTGGCA-C----CCTTCA
1 AAGTCCACAACTCCATGGCATCTTTTCCTTTT
** * * **
1106684 AAGTCCATGACTCAATGGCATCCTTTTTCTTCC
1 AAGTCCACAACTCCATGGCAT-CTTTTCCTTTT
* * * *
1106717 AAGTCCACGACT-CAGTTGCATCTCTT-C-TCT
1 AAGTCCACAACTCCA-TGGCATCTTTTCCTTTT
* * *
1106747 AAGTCCACAATTTTC-TGGCACCTTTTCCTTTT
1 AAGTCCACAA-CTCCATGGCATCTTTTCCTTTT
* *
1106779 AAGACCACAACTCCATGGCACCCTTTTTTCCTTTT
1 AAGTCCACAACTCCATGGCA---TCTTTTCCTTTT
*
1106814 AAGTCTACAACTCCATGGC-TC----CCTTTT
1 AAGTCCACAACTCCATGGCATCTTTTCCTTTT
* * *
1106841 AAGTCCATAACTCTATGGCA-CCTTTCTCTTTT
1 AAGTCCACAACTCCATGGCATCTTTTC-CTTTT
*
1106873 CAAAGCCCACAACTCCATGGCATCTTTTCCTTTT
1 --AAGTCCACAACTCCATGGCATCTTTTCCTTTT
* *
1106907 TAGTCCACAACTCCGTGGCA
1 AAGTCCACAACTCCATGGCA
1106927 CCCTCTTCTA
Statistics
Matches: 302, Mismatches: 52, Indels: 56
0.74 0.13 0.14
Matches are distributed among these distances:
27 113 0.37
29 1 0.00
30 39 0.13
31 10 0.03
32 65 0.22
33 20 0.07
34 22 0.07
35 32 0.11
ACGTcount: A:0.22, C:0.32, G:0.12, T:0.34
Consensus pattern (32 bp):
AAGTCCACAACTCCATGGCATCTTTTCCTTTT
Found at i:1107179 original size:95 final size:94
Alignment explanation
Indices: 1107014--1107301 Score: 328
Period size: 95 Copynumber: 3.0 Consensus size: 94
1107004 ATCTTTTTAT
* *
1107014 CTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTTACGATCTTCT-AG-CCTA
1 CTTTAAGTCCAATATCGCTGGCCTTGACTCAGCATATTGGCACCTTTAC-ATCTT-TAAGTCC-A
** * *
1107077 ACATCACTGGCCTTAAATCAACACATTGGCAC
63 ATGTCACTGGCCTTGAATCAGCACATTGGCAC
* * *
1107109 CTTTAAGTCCAATATCGCTGGCCTTGACTCAGCATATTGACGCCTTTGTCATCTTTAAGTCCAAT
1 CTTTAAGTCCAATATCGCTGGCCTTGACTCAGCATATTGGCACCTTT-ACATCTTTAAGTCCAAT
* *
1107174 GTCACTGGCCTTGAATTAGCACATTGCCAC
65 GTCACTGGCCTTGAATCAGCACATTGGCAC
* * * * * * *
1107204 CTTTAAGCCCAATATCTCCGGCCTTGACTAAGCATTTTGGCACTTTTACCACCTTTAAGTCCAAT
1 CTTTAAGTCCAATATCGCTGGCCTTGACTCAGCATATTGGCACCTTTA-CATCTTTAAGTCCAAT
***
1107269 GTTGTTGGCCTTGAATCAGCACATTGGCAC
65 GTCACTGGCCTTGAATCAGCACATTGGCAC
1107299 CTT
1 CTT
1107302 CACCATTTTT
Statistics
Matches: 163, Mismatches: 26, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
94 1 0.01
95 159 0.98
96 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.32
Consensus pattern (94 bp):
CTTTAAGTCCAATATCGCTGGCCTTGACTCAGCATATTGGCACCTTTACATCTTTAAGTCCAATG
TCACTGGCCTTGAATCAGCACATTGGCAC
Found at i:1107207 original size:52 final size:51
Alignment explanation
Indices: 1107109--1107559 Score: 228
Period size: 52 Copynumber: 8.9 Consensus size: 51
1107099 ACATTGGCAC
* * * * *
1107109 CTTTAAGTCCAATATCGCTGGCCTTGACTCAGCATATTGACGCCTTTGTCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATTAGCACATTGACACCTTT-CCAT
* * *
1107161 CTTTAAGTCCAATGTCACTGGCCTTGAATTAGCACATTG--------CCAC
1 CTTTAAGTCCAATATCGCTGGCCTTGAATTAGCACATTGACACCTTTCCAT
* * * * * ** * * *
1107204 CTTTAAGCCCAATATCTCCGGCCTTGACTAAGCATTTTGGCACTTTTACCAC
1 CTTTAAGTCCAATATCGCTGGCCTTGAATTAGCACATTGACACCTTT-CCAT
* * * * * *
1107256 CTTTAAGTCCAATGTTGTTGGCCTTGAATCAGCACATTGGCACCTTCACCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATTAGCACATTGACACCTT-TCCAT
* * *
1107308 TTTTAAGTTCAATGTCGCTGGCCTTGAATTAGCACATTGACACC-TT-CAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATTAGCACATTGACACCTTTCCAT
** * * *
1107357 CTTTAAGTCTGATATCGCTGGCCTTGAATTAGCATATTAGA-ATCTTTAACAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATTAGCACATT-GACACCTTT-CCAT
* * ** * * * * *
1107409 -TCCTAAGCCCAATGCCGCTGGCCTTCAATCAACACATTGGCA-TTCTTCTCAT
1 CT-TTAAGTCCAATATCGCTGGCCTTGAATTAGCACATTGACACCT-TTC-CAT
* * * ** * ** *
1107461 CTTCAATTCTAACGTCGCTGGCCGTGAATCGGCACATTGACA-TTCTTCGCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATTAGCACATTGACACCT-TTC-CAT
* * * *
1107513 CTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATTAGCACATTGACACCTTT
1107560 ATCATTCTTC
Statistics
Matches: 300, Mismatches: 79, Indels: 40
0.72 0.19 0.10
Matches are distributed among these distances:
43 33 0.11
49 37 0.12
50 4 0.01
51 4 0.01
52 220 0.73
53 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.16, T:0.33
Consensus pattern (51 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATTAGCACATTGACACCTTTCCAT
Found at i:1107596 original size:61 final size:61
Alignment explanation
Indices: 1107501--1107637 Score: 202
Period size: 61 Copynumber: 2.2 Consensus size: 61
1107491 GGCACATTGA
* * *
1107501 CATTCTTCGCATCTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
1 CATTCTTCTCATCTTTAAGCCCAATATCGCTGGCCCTGAATCAGCATACTGGCACCTTTAT
* * * *
1107562 CATTCTTCTTATCTTTAAGCCCAATATTGTTGGCCCTGAATCAGCATACTGGCATCTTTAT
1 CATTCTTCTCATCTTTAAGCCCAATATCGCTGGCCCTGAATCAGCATACTGGCACCTTTAT
*
1107623 CACTCTTCTCATCTT
1 CATTCTTCTCATCTT
1107638 CATCATCTTT
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
61 67 1.00
ACGTcount: A:0.22, C:0.28, G:0.12, T:0.38
Consensus pattern (61 bp):
CATTCTTCTCATCTTTAAGCCCAATATCGCTGGCCCTGAATCAGCATACTGGCACCTTTAT
Found at i:1109340 original size:27 final size:27
Alignment explanation
Indices: 1109308--1109397 Score: 108
Period size: 27 Copynumber: 3.3 Consensus size: 27
1109298 ATCTCTTCTC
* * *
1109308 TAAGTCCCCAACTTCAAGGCACCTTTT
1 TAAGTCCACAACTCCAAGGCACCCTTT
*
1109335 TAAGTCCACAACTCCATGGCACCCTTT
1 TAAGTCCACAACTCCAAGGCACCCTTT
** *
1109362 TAAGTCCACAACTCCGTGGTACCCTTT
1 TAAGTCCACAACTCCAAGGCACCCTTT
*
1109389 AAAGTCCAC
1 TAAGTCCAC
1109398 GACTTAGTGG
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.27, C:0.34, G:0.12, T:0.27
Consensus pattern (27 bp):
TAAGTCCACAACTCCAAGGCACCCTTT
Done.