genome.fa.s392.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold392
Parameters: 2 7 7 80 10 50 1000
Length:  803515

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 687 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
627435--627490	11	4.9	12	73	18	57	60	0	3	35	1.14
628034--628063	3	10.0	3	100	0	60	66	0	0	33	0.92
628778--628824	24	2.0	25	84	12	64	38	2	0	59	1.09
629052--629087	2	18.0	2	100	0	72	50	0	0	50	1.00
629202--629240	19	2.1	19	85	9	53	51	0	0	48	1.00
631743--631780	2	19.0	2	100	0	76	50	0	0	50	1.00
642005--642097	1	93.0	1	78	0	78	87	5	7	0	0.68
642005--642094	32	2.9	32	90	9	150	86	5	7	0	0.70
644516--644590	16	4.4	16	75	18	71	57	0	0	42	0.98
645527--645580	22	2.5	21	79	8	72	55	1	0	42	1.10
646427--646456	2	15.0	2	92	0	51	50	3	0	46	1.18
647562--647612	19	2.5	20	76	23	54	52	0	0	47	1.00
650834--650900	29	2.3	29	100	0	134	17	23	17	40	1.91
653957--653986	2	15.0	2	100	0	60	50	0	0	50	1.00
660077--660109	4	8.0	4	93	6	57	0	75	0	24	0.80
671051--671089	20	1.9	21	84	5	53	41	5	7	46	1.55
672183--672254	32	2.2	33	82	2	83	54	2	8	34	1.45
672324--672369	22	2.1	22	88	4	67	36	0	19	43	1.51
672328--672381	22	2.5	22	79	8	58	38	0	14	46	1.45
672723--672768	21	2.2	20	88	3	65	54	2	0	43	1.12
672863--672903	15	2.8	15	78	17	50	53	0	4	41	1.22
673194--673390	96	2.0	97	90	2	306	45	9	19	25	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
676934--676996	33	1.9	33	87	6	92	44	12	11	31	1.78
677117--677155	21	1.9	20	94	5	69	35	12	15	35	1.86
683079--683171	47	2.0	47	93	0	159	34	15	16	34	1.90
683837--683868	16	1.9	17	93	6	57	62	0	3	34	1.11
684250--684293	20	2.2	20	91	0	70	36	18	31	13	1.90
684259--684302	20	2.2	20	100	0	88	29	20	36	13	1.91
690461--690495	12	2.9	12	91	0	52	11	28	31	28	1.92
690716--690751	2	18.0	2	94	0	63	47	2	0	50	1.15
717500--717560	31	2.0	31	100	0	122	42	24	16	16	1.88
722745--722793	20	2.5	20	79	0	62	38	4	44	12	1.61
724787--724832	21	2.1	22	84	4	58	19	30	19	30	1.97
727815--727870	28	2.0	28	100	0	112	39	25	10	25	1.87
736143--736187	16	2.8	16	79	0	54	24	13	11	51	1.73
739252--739300	25	2.0	25	100	0	98	26	16	32	24	1.96
740308--740351	2	22.0	2	100	0	88	50	0	0	50	1.00
740906--740932	2	13.5	2	100	0	54	51	0	0	48	1.00
741179--741223	3	15.0	3	90	9	74	33	2	0	64	1.06
742485--742577	48	2.0	47	82	2	114	21	13	22	41	1.88
745815--745842	5	5.6	5	100	0	56	42	21	35	0	1.53
748566--748597	12	2.7	12	95	0	55	0	9	0	90	0.45
748566--748597	17	1.9	16	93	6	55	0	9	0	90	0.45
750793--750833	2	20.5	2	94	0	73	2	48	0	48	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
751537--751563	6	4.5	6	100	0	54	33	14	0	51	1.43
752070--752103	2	17.0	2	100	0	68	50	0	0	50	1.00
752163--752230	27	2.5	26	76	9	66	51	0	1	47	1.09
752205--752241	18	2.2	17	86	13	51	54	0	2	43	1.14
752221--752261	21	2.0	20	85	9	55	56	0	4	39	1.21
758342--758370	2	14.5	2	100	0	58	51	0	0	48	1.00
759458--759488	2	15.5	2	100	0	62	0	48	0	51	1.00
760632--760661	2	15.0	2	100	0	60	50	0	0	50	1.00
761000--761030	1	31.0	1	100	0	62	0	0	0	100	0.00
765024--765048	2	12.5	2	100	0	50	48	0	0	52	1.00
765366--765399	17	2.0	17	88	0	50	50	5	5	38	1.51
772215--772249	3	11.7	3	100	0	70	31	0	0	68	0.90
773528--773562	2	17.5	2	93	0	61	45	2	51	0	1.16
774787--774850	29	2.2	29	85	2	83	56	4	0	39	1.20
774804--774850	13	3.4	13	81	16	58	61	2	0	36	1.08
774798--774862	29	2.2	29	80	0	76	50	3	1	44	1.26
774948--774993	14	3.4	13	81	3	56	41	0	2	56	1.11
774976--775067	40	2.4	39	78	12	102	38	3	6	52	1.44
775035--775216	31	5.9	31	71	19	98	37	6	6	50	1.53
775163--775247	17	4.8	17	75	13	82	41	1	3	54	1.25
775941--775966	13	2.0	13	100	0	52	46	15	7	30	1.74
782417--782586	52	3.3	51	83	3	207	34	8	31	25	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
784461--784504	2	22.0	2	100	0	88	50	0	0	50	1.00
786122--786162	19	2.1	19	86	4	55	58	2	0	39	1.11
786305--786498	99	2.0	99	88	0	289	44	1	10	43	1.47
787416--787445	2	15.0	2	100	0	60	50	0	0	50	1.00
787848--787879	16	2.0	16	93	0	55	68	0	3	28	1.04
787860--787888	13	2.1	14	93	6	51	68	0	0	31	0.89
787865--787949	29	3.0	28	79	16	95	56	0	0	43	0.99
787872--787943	29	2.5	30	80	8	96	56	0	0	43	0.99
787902--787964	27	2.3	26	78	10	65	60	1	0	38	1.07
788471--788512	3	14.0	3	100	0	84	66	0	0	33	0.92
790251--790282	16	2.0	16	93	0	55	21	12	15	50	1.77
790809--790859	22	2.3	21	83	6	57	25	0	3	70	1.04
790896--790946	16	3.2	16	74	20	52	47	3	3	45	1.40
792056--792226	84	2.0	84	93	2	290	33	18	5	43	1.72
792634--792716	42	2.0	42	85	0	112	32	13	25	28	1.93
794037--794465	79	5.4	79	79	3	416	34	11	24	29	1.91
794025--794464	237	1.9	238	80	2	535	35	11	24	29	1.90
794399--794507	51	2.1	50	82	11	132	34	8	25	31	1.86
796882--797010	50	2.6	50	87	0	168	42	11	16	29	1.83
800212--800243	11	2.9	11	95	0	55	87	3	9	0	0.64
802354--802399	23	1.9	23	82	8	56	19	10	13	56	1.66

Tables:   1   2   3   4   5   6

The End!