Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold394
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 241827
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
File 1 of 2
Found at i:8051 original size:10 final size:10
Alignment explanation
Indices: 8036--8062 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
8026 ATGTATCAAG
8036 CAAAAACAAA
1 CAAAAACAAA
8046 CAAAAACAAA
1 CAAAAACAAA
8056 CAAAAAC
1 CAAAAAC
8063 TTAGTTAGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.78, C:0.22, G:0.00, T:0.00
Consensus pattern (10 bp):
CAAAAACAAA
Found at i:12292 original size:52 final size:51
Alignment explanation
Indices: 12212--12330 Score: 202
Period size: 52 Copynumber: 2.3 Consensus size: 51
12202 AAAAGTTGCT
*
12212 TGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTACC
1 TGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAA-TTACC
* *
12264 TGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTGCC
1 TGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTACC
12315 TGCATGTATCGATACA
1 TGCATGTATCGATACA
12331 AAGATCAGTG
Statistics
Matches: 64, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
51 20 0.31
52 44 0.69
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (51 bp):
TGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTACC
Found at i:12357 original size:13 final size:13
Alignment explanation
Indices: 12339--12363 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
12329 CAAAGATCAG
12339 TGTATCGATACAA
1 TGTATCGATACAA
12352 TGTATCGATACA
1 TGTATCGATACA
12364 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:12441 original size:33 final size:33
Alignment explanation
Indices: 12404--12470 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
12394 AGTAGCTTAA
12404 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
12437 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
12470 A
1 A
12471 AATCATTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:12444 original size:13 final size:13
Alignment explanation
Indices: 12426--12450 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
12416 CAAAAAAATA
12426 TGTATCGATACAT
1 TGTATCGATACAT
12439 TGTATCGATACA
1 TGTATCGATACA
12451 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:13355 original size:22 final size:22
Alignment explanation
Indices: 13330--13398 Score: 56
Period size: 22 Copynumber: 3.2 Consensus size: 22
13320 ATGTTGATTC
13330 AAGGCCAGCTATATTGGACTTA
1 AAGGCCAGCTATATTGGACTTA
* * *
13352 AAGG--TGCCA-ATGTGCTGA-TTC
1 AAGGCCAGCTATAT-TG--GACTTA
13373 AAGGCCAGCTATATTGGACTTA
1 AAGGCCAGCTATATTGGACTTA
13395 AAGG
1 AAGG
13399 TGAAGGTGCC
Statistics
Matches: 34, Mismatches: 6, Indels: 14
0.63 0.11 0.26
Matches are distributed among these distances:
19 2 0.06
20 5 0.15
21 8 0.24
22 12 0.35
23 5 0.15
24 2 0.06
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.26
Consensus pattern (22 bp):
AAGGCCAGCTATATTGGACTTA
Found at i:13424 original size:49 final size:49
Alignment explanation
Indices: 13206--13492 Score: 300
Period size: 49 Copynumber: 5.8 Consensus size: 49
13196 GTGATAAAGA
* * * *
13206 TGCCAATATG-TCGATTCACGGCCAACGATATTGGGCTTAAAGATGAGAAAAAGG
1 TGCCAATATGCT-GATTCAAGGCCAGCTATATTGGACTTAAAGAT--G---AAGG
* * * * *
13260 ATGTCAATGTGCTGATTCAAGGCCAGCTACATAGAACTTAAAGATGGAAAAGG
1 -TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAT-G--AAGG
*
13313 TGCCAATATGTTGATTCAAGGCCAGCTATATTGGACTT----A--AAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGG
* *
13356 TGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGG
*
13405 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGG
* *
13454 TGCCAATATGGTGATTCAAGGCCAGCTATATTGGGCTTA
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTA
13493 GAAGGGTTGC
Statistics
Matches: 201, Mismatches: 24, Indels: 20
0.82 0.10 0.08
Matches are distributed among these distances:
43 40 0.20
48 1 0.00
49 87 0.43
52 32 0.16
53 6 0.03
54 1 0.00
55 33 0.16
56 1 0.00
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.26
Consensus pattern (49 bp):
TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGG
Found at i:13547 original size:30 final size:29
Alignment explanation
Indices: 13513--13934 Score: 331
Period size: 30 Copynumber: 14.3 Consensus size: 29
13503 CATCGACTTG
*
13513 TGTGGGCTTTGGAAAAGGGTGCCACTGATT
1 TGTGGGCTTT-GAAAAGGGTGCCACTGACT
*
13543 TGTGGGCTTTG--AAGGTTGCCACTGACT
1 TGTGGGCTTTGAAAAGGGTGCCACTGACT
* *
13570 TGTGGGCTTT-TAAAGGTTGCCACTGACT
1 TGTGGGCTTTGAAAAGGGTGCCACTGACT
***
13598 TGTGGGCTTTTGAAAAATATGCCACTGACT
1 TGTGGGC-TTTGAAAAGGGTGCCACTGACT
* *
13628 TGTGGGCTTTTGAACAGGGTGCCACTAACT
1 TGTGGGC-TTTGAAAAGGGTGCCACTGACT
***
13658 TGTGGGCTTTTGAAAAATATGCCACTGACT
1 TGTGGGC-TTTGAAAAGGGTGCCACTGACT
*
13688 TGTGGGCTGTTGAAAAGGGTGCCACTAACT
1 TGTGGGCT-TTGAAAAGGGTGCCACTGACT
* * *
13718 TGTGGGC--TGAAAAGAGTGCTA-TAGAGT
1 TGTGGGCTTTGAAAAGGGTGCCACT-GACT
* * * * *
13745 TGTGAGCTTACAAAAGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTT-----TG-AAAAGGGTGCCACTGACT
* * *
13780 TGTGGACTTTGGAAAA-GATGCCACCGACT
1 TGTGGGCTTT-GAAAAGGGTGCCACTGACT
* *
13809 TGTGGGCTTCGAAAAAGGGTGCCACTGATT
1 TGTGGGCTTTG-AAAAGGGTGCCACTGACT
*
13839 TGTGGGCTTTG--AAGGTTGCCACTGACT
1 TGTGGGCTTTGAAAAGGGTGCCACTGACT
*** *
13866 TGTGGGCTTTCGAAAAAAATGCCACCGACT
1 TGTGGGCTTT-GAAAAGGGTGCCACTGACT
***
13896 TGTGGGCTTTGAAAAAAATGCCACTGACT
1 TGTGGGCTTTGAAAAGGGTGCCACTGACT
*
13925 TGTGGACTTT
1 TGTGGGCTTT
13935 TGAAGGGTGA
Statistics
Matches: 322, Mismatches: 49, Indels: 43
0.78 0.12 0.10
Matches are distributed among these distances:
26 1 0.00
27 68 0.21
28 25 0.08
29 53 0.16
30 151 0.47
31 1 0.00
34 1 0.00
35 22 0.07
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.29
Consensus pattern (29 bp):
TGTGGGCTTTGAAAAGGGTGCCACTGACT
Found at i:13669 original size:60 final size:59
Alignment explanation
Indices: 13513--13938 Score: 388
Period size: 60 Copynumber: 7.2 Consensus size: 59
13503 CATCGACTTG
* * **
13513 TGTGGGCTTTGGAAAAGGGTGCCACTGATTTGTGGGCTTTG-AAGGT-TGCCACTGACT
1 TGTGGGCTTTTGAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAATATGCCACTGACT
*
13570 TGTGGGCTTTT--AAAGGTTGCCACTGACTTGTGGGCTTTTGAAAAATATGCCACTGACT
1 TGTGGGCTTTTGAAAAGGGTGCCACTGACTTGTGGGC-TTTGAAAAATATGCCACTGACT
* *
13628 TGTGGGCTTTTGAACAGGGTGCCACTAACTTGTGGGCTTTTGAAAAATATGCCACTGACT
1 TGTGGGCTTTTGAAAAGGGTGCCACTGACTTGTGGGC-TTTGAAAAATATGCCACTGACT
* * * * *
13688 TGTGGGCTGTTGAAAAGGGTGCCACTAACTTGTGGGC--TGAAAAGA-GTGCTA-TAGAGT
1 TGTGGGCTTTTGAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAA-ATATGCCACT-GACT
* ** * * * * * * *
13745 TGTGAGCTTACAAAAGAAAAAGAGTGCCACGGAGTTGTGGACTTTGGAAAAGATGCCACCGACT
1 TGTGGGCTT----TTG-AAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAATATGCCACTGACT
* * **
13809 TGTGGGC-TTCGAAAAAGGGTGCCACTGATTTGTGGGCTTTG-AAGGT-TGCCACTGACT
1 TGTGGGCTTTTG-AAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAATATGCCACTGACT
* *** * *
13866 TGTGGGCTTTCGAAAAAAATGCCACCGACTTGTGGGCTTTGAAAAAAATGCCACTGACT
1 TGTGGGCTTTTGAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAATATGCCACTGACT
*
13925 TGTGGACTTTTGAA
1 TGTGGGCTTTTGAA
13939 GGGTGATGAA
Statistics
Matches: 302, Mismatches: 48, Indels: 36
0.78 0.12 0.09
Matches are distributed among these distances:
55 22 0.07
56 5 0.02
57 74 0.25
58 31 0.10
59 50 0.17
60 79 0.26
61 1 0.00
62 20 0.07
63 2 0.01
64 18 0.06
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.29
Consensus pattern (59 bp):
TGTGGGCTTTTGAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAATATGCCACTGACT
Found at i:13811 original size:29 final size:29
Alignment explanation
Indices: 13760--13934 Score: 183
Period size: 29 Copynumber: 6.0 Consensus size: 29
13750 GCTTACAAAA
* * *
13760 GAAAAAGAGTGCCACGGAGTTGTGGACTTT
1 GAAAAAGA-TGCCACTGACTTGTGGGCTTT
* * *
13790 GGAAAAGATGCCACCGACTTGTGGGCTTC
1 GAAAAAGATGCCACTGACTTGTGGGCTTT
* *
13819 GAAAAAGGGTGCCACTGATTTGTGGGCTTT
1 GAAAAA-GATGCCACTGACTTGTGGGCTTT
* *
13849 G--AAGGTTGCCACTGACTTGTGGGCTTT
1 GAAAAAGATGCCACTGACTTGTGGGCTTT
* *
13876 CGAAAAAAATGCCACCGACTTGTGGGCTTT
1 -GAAAAAGATGCCACTGACTTGTGGGCTTT
* *
13906 GAAAAAAATGCCACTGACTTGTGGACTTT
1 GAAAAAGATGCCACTGACTTGTGGGCTTT
13935 TGAAGGGTGA
Statistics
Matches: 122, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
27 21 0.17
28 3 0.02
29 49 0.40
30 49 0.40
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.26
Consensus pattern (29 bp):
GAAAAAGATGCCACTGACTTGTGGGCTTT
Found at i:13869 original size:121 final size:116
Alignment explanation
Indices: 13655--13929 Score: 286
Period size: 121 Copynumber: 2.3 Consensus size: 116
13645 GGTGCCACTA
* *
13655 ACTTGTGGGCTTTTGAAAAATATGCCACTGACTTGTGGGCTGTTGAAAAGGGTGCCACTAACTTG
1 ACTTGTGGGC-TTTGAAAAAAATGCCACTGACTTGTGGGCTGTCGAAAAGGGTGCCACTAACTTG
* * * *
13720 TGGGCTGAAAAGAGTGCTATAGAGTTGTGAGCTTACAAAAGAAAAAGAGTGCCACGG
65 TGGGCTGAAAAGAGTGCCATAGACTTGTGAGCTTAC----GAAAAA-AATGCCACCG
* * * * * * *
13777 AGTTGTGGACTTTGGAAAAGATGCCACCGACTTGTGGGCT-TCGAAAAAGGGTGCCACTGATTTG
1 ACTTGTGGGCTTTGAAAAAAATGCCACTGACTTGTGGGCTGTCG-AAAAGGGTGCCACTAACTTG
*** * *
13841 TGGGCTTTGAAG-GTTGCCACT-GACTTGTGGGCTTTCGAAAAAAATGCCACCG
65 TGGGCTGAAAAGAG-TGCCA-TAGACTTGTGAGCTTACGAAAAAAATGCCACCG
13893 ACTTGTGGGCTTTGAAAAAAATGCCACTGACTTGTGG
1 ACTTGTGGGCTTTGAAAAAAATGCCACTGACTTGTGG
13930 ACTTTTGAAG
Statistics
Matches: 128, Mismatches: 22, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
116 40 0.31
117 6 0.05
120 3 0.02
121 70 0.55
122 9 0.07
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (116 bp):
ACTTGTGGGCTTTGAAAAAAATGCCACTGACTTGTGGGCTGTCGAAAAGGGTGCCACTAACTTGT
GGGCTGAAAAGAGTGCCATAGACTTGTGAGCTTACGAAAAAAATGCCACCG
Found at i:18279 original size:30 final size:29
Alignment explanation
Indices: 18243--18330 Score: 95
Period size: 32 Copynumber: 2.9 Consensus size: 29
18233 CATGGCTCAA
18243 TGGCATCCTTTTTCAAAGTCCACAACTAAG
1 TGGCATCCTTTTT-AAAGTCCACAACTAAG
* * **
18273 TGGCATCTATTTTTTAAAAGTCCATAACTTTG
1 TGGCATC--CTTTTT-AAAGTCCACAACTAAG
*
18305 TGGCACCCTTTTTAAAGTCCACAACT
1 TGGCATCCTTTTTAAAGTCCACAACT
18331 TCGTGACACT
Statistics
Matches: 48, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
29 12 0.25
30 12 0.25
32 24 0.50
ACGTcount: A:0.28, C:0.24, G:0.12, T:0.35
Consensus pattern (29 bp):
TGGCATCCTTTTTAAAGTCCACAACTAAG
Found at i:18330 original size:29 final size:30
Alignment explanation
Indices: 18243--18376 Score: 92
Period size: 29 Copynumber: 4.4 Consensus size: 30
18233 CATGGCTCAA
* * *
18243 TGGCATCCTTTTTCAAAGTCCACAACTAAG
1 TGGCACCCTTTTTAAAAGTCCACAACTTAG
** * *
18273 TGGCATCTATTTTTTAAAAGTCCATAACTTTG
1 TGGCA-C-CCTTTTTAAAAGTCCACAACTTAG
*
18305 TGGCACCCTTTTT-AAAGTCCACAACTTCG
1 TGGCACCCTTTTTAAAAGTCCACAACTTAG
* * * * *
18334 TGACACTC-TTTTCAAAGCCCACACAAGTTAG
1 TGGCACCCTTTTTAAAAG-TC-CACAACTTAG
18365 TGGCACCTCTTT
1 TGGCACC-CTTT
18377 CTTTTTTTCT
Statistics
Matches: 79, Mismatches: 18, Indels: 11
0.73 0.17 0.10
Matches are distributed among these distances:
28 4 0.05
29 24 0.30
30 11 0.14
31 14 0.18
32 24 0.30
33 2 0.03
ACGTcount: A:0.27, C:0.26, G:0.13, T:0.34
Consensus pattern (30 bp):
TGGCACCCTTTTTAAAAGTCCACAACTTAG
Found at i:18481 original size:71 final size:73
Alignment explanation
Indices: 18378--18569 Score: 219
Period size: 73 Copynumber: 2.6 Consensus size: 73
18368 CACCTCTTTC
* * * * ** *
18378 TTTTTTTCTTTTTAAAACTCACATAAGTTGGTGGCACCTTTTTCTTTTTAAAG-CTCGCACAAGC
1 TTTTTCTCTTTTT-AAGCCCACACAAGTTGGTGGCACCCCTTTCTTTTCAAAGCCT-GCACAAGC
* **
18442 TAG-GA-GTA
64 TAGCAACACA
*
18450 TTTTTCTCTTTTTAAGCCCACACAAGTTGGTGGCACCCCTTTCTTTTCAAAGCCTGCACAGGCTA
1 TTTTTCTCTTTTTAAGCCCACACAAGTTGGTGGCACCCCTTTCTTTTCAAAGCCTGCACAAGCTA
18515 GCAACACA
66 GCAACACA
* * *
18523 TTTTTCTTTTTTTAAGCCTACACAAGTTGGTGGCACCCCATTCTTTT
1 TTTTTCTCTTTTTAAGCCCACACAAGTTGGTGGCACCCCTTTCTTTT
18570 TTTTCTCTTT
Statistics
Matches: 103, Mismatches: 14, Indels: 5
0.84 0.11 0.04
Matches are distributed among these distances:
71 43 0.42
72 15 0.15
73 45 0.44
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (73 bp):
TTTTTCTCTTTTTAAGCCCACACAAGTTGGTGGCACCCCTTTCTTTTCAAAGCCTGCACAAGCTA
GCAACACA
Found at i:18567 original size:37 final size:37
Alignment explanation
Indices: 18453--18572 Score: 95
Period size: 37 Copynumber: 3.3 Consensus size: 37
18443 AGGAGTATTT
* * *
18453 TTCTCTTTTTAAGCCCACACAAGTTGGTGGCACCCCT
1 TTCTTTTTTTAAGCCTACACAAGTTGGTGGCACCCCA
** * * * * *
18490 TTC-TTTTCAAAGCCTGCAC-AG--GCTAGCAACACA
1 TTCTTTTTTTAAGCCTACACAAGTTGGTGGCACCCCA
18523 TTTTTCTTTTTTTAAGCCTACACAAGTTGGTGGCACCCCA
1 ---TTCTTTTTTTAAGCCTACACAAGTTGGTGGCACCCCA
18563 TTCTTTTTTT
1 TTCTTTTTTT
18573 TCTCTTTAGA
Statistics
Matches: 59, Mismatches: 17, Indels: 14
0.66 0.19 0.16
Matches are distributed among these distances:
33 7 0.12
35 2 0.03
36 14 0.24
37 26 0.44
38 2 0.03
40 8 0.14
ACGTcount: A:0.21, C:0.28, G:0.14, T:0.38
Consensus pattern (37 bp):
TTCTTTTTTTAAGCCTACACAAGTTGGTGGCACCCCA
Found at i:18728 original size:112 final size:114
Alignment explanation
Indices: 18450--18850 Score: 427
Period size: 112 Copynumber: 3.5 Consensus size: 114
18440 GCTAGGAGTA
* * * * *
18450 TTTTTCTCTTTTT-AAGCCCACACAAGTTGGTGGCACCCCTTTCTTTTCAAAGCCTGCACAGGCT
1 TTTTTTTCTTTTTAAAGGCCACATAAGTTGGTGGCACCCCTTTCTTTTTAAAGCC-GCACAAGCT
* * *
18514 AGCAACACATTTTTCTTTTTTTAAGCCTACACAAGTTGGTGGCACCCCATTCT
65 AGTAGCACATTTTTCTCTTTTTAAGCCTACACAAGTTGGTGGCA--CCA-TCT
* *
18567 TTTTTTTCTCTTTAGA-GCCTACATAAGTTGGTGGCACCCCTTTCTTTTTAAAGCTCGCACAAGC
1 TTTTTTTCTTTTTAAAGGCC-ACATAAGTTGGTGGCACCCCTTTCTTTTTAAAGC-CGCACAAGC
* * * **
18631 TGGTGGCACATTTTTCTCTTTTTAAGCCTTCA-TTGTTGGTGGCA-C-TCT
64 TAGTAGCACATTTTTCTCTTTTTAAGCCTACACAAGTTGGTGGCACCATCT
* *
18679 TTTTTTTCTTTTTAAAGGCCACATAAGTTGGTAGCACCACTTTCTTTTTAAAGCCCGCACAAGCT
1 TTTTTTTCTTTTTAAAGGCCACATAAGTTGGTGGCACCCCTTTCTTTTTAAAG-CCGCACAAGCT
* * ** *
18744 AGTAGCACCTTTTTCTCTTTTTAAGCCCACACAAGTTACTAGCACCAT-T
65 AGTAGCACATTTTTCTCTTTTTAAGCCTACACAAGTTGGTGGCACCATCT
* * * * *
18793 TTCTTTTATCCTTTTCAAAGCCCACACAAGTTGGTAGCACCCGTTTCTTTTTAAAGCC
1 TT-TTTT-T-CTTTTTAAAGGCCACATAAGTTGGTGGCACCCCTTTCTTTTTAAAGCC
18851 CCCGCATAAG
Statistics
Matches: 239, Mismatches: 34, Indels: 23
0.81 0.11 0.08
Matches are distributed among these distances:
112 84 0.35
113 11 0.05
114 5 0.02
115 5 0.02
116 3 0.01
117 64 0.27
118 66 0.28
119 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.14, T:0.38
Consensus pattern (114 bp):
TTTTTTTCTTTTTAAAGGCCACATAAGTTGGTGGCACCCCTTTCTTTTTAAAGCCGCACAAGCTA
GTAGCACATTTTTCTCTTTTTAAGCCTACACAAGTTGGTGGCACCATCT
Found at i:18770 original size:230 final size:228
Alignment explanation
Indices: 18450--18888 Score: 544
Period size: 230 Copynumber: 1.9 Consensus size: 228
18440 GCTAGGAGTA
* * * *
18450 TTTTTCTCTTTTTAAGCCCACACAAGTTGGTGGCACCCCTTTCTTTTCAAAGCCTGCACAGGCTA
1 TTTTTCTCTTTTTAAGCCCACACAAGTTGGTAGCACCACTTTCTTTTCAAAGCCCGCACAAGCTA
* * ** * *
18515 GCAACACATTTTTCTTTTTTTAAGCCTACACAAGTTGGTGGCACCCCATTCTT-TTTT-TTCTCT
66 GCAACACATTTTTCTCTTTTTAAGCCCACACAAGTTACTAGCA--CCATT-TTCTTTTATCCT-T
* * * * *
18578 TT-AGAGCCTACATAAGTTGGTGGCACCCCTTTCTTTTTAAAG-CTCGCACAAGCTGGTGGCACA
127 TTCAAAGCCCACACAAGTTGGTAGCACCCCTTTCTTTTTAAAGCCCCGCACAAGCTGGTGGCACA
18641 TTTTTCTCTTTTTAAGCCTTCATTGTTGGTGGCACTCT
192 TTTTT-TCTTTTTAAGCCTTCATTGTTGGTGGCACTCT
* * * *
18679 TTTTTTTCTTTTTAAAGGCCACATAAGTTGGTAGCACCACTTTCTTTTTAAAGCCCGCACAAGCT
1 TTTTTCTCTTTTT-AAGCCCACACAAGTTGGTAGCACCACTTTCTTTTCAAAGCCCGCACAAGCT
* * *
18744 AGTAGCACCTTTTTCTCTTTTTAAGCCCACACAAGTTACTAGCACCATTTTCTTTTATCCTTTTC
65 AGCAACACATTTTTCTCTTTTTAAGCCCACACAAGTTACTAGCACCATTTTCTTTTATCCTTTTC
* * * *
18809 AAAGCCCACACAAGTTGGTAGCACCCGTTTCTTTTTAAAGCCCCCGCATAAGCTGGTGGTACCTT
130 AAAGCCCACACAAGTTGGTAGCACCCCTTTCTTTTTAAAG-CCCCGCACAAGCTGGTGGCACATT
*
18874 TTTTCTTTTTTAGCC
194 TTTTCTTTTTAAGCC
18889 CATACAAGTT
Statistics
Matches: 177, Mismatches: 27, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
227 2 0.01
228 12 0.07
229 50 0.28
230 91 0.51
231 22 0.12
ACGTcount: A:0.21, C:0.26, G:0.15, T:0.38
Consensus pattern (228 bp):
TTTTTCTCTTTTTAAGCCCACACAAGTTGGTAGCACCACTTTCTTTTCAAAGCCCGCACAAGCTA
GCAACACATTTTTCTCTTTTTAAGCCCACACAAGTTACTAGCACCATTTTCTTTTATCCTTTTCA
AAGCCCACACAAGTTGGTAGCACCCCTTTCTTTTTAAAGCCCCGCACAAGCTGGTGGCACATTTT
TTCTTTTTAAGCCTTCATTGTTGGTGGCACTCT
Found at i:18787 original size:37 final size:37
Alignment explanation
Indices: 18680--18970 Score: 135
Period size: 37 Copynumber: 7.7 Consensus size: 37
18670 TGGCACTCTT
* * * *
18680 TTTTTTCTTTTTAAAGGCCACATAAGTTGGTAGCACCA
1 TTTTCTCTTTTT-AAGCCCACACAAGTTAGTAGCACCA
* * * * *
18718 CTTTCT-TTTTAAAGCCCGCACAAGCTAGTAGCACCT
1 TTTTCTCTTTTTAAGCCCACACAAGTTAGTAGCACCA
*
18754 TTTTCTCTTTTTAAGCCCACACAAGTTACTAGCACCA
1 TTTTCTCTTTTTAAGCCCACACAAGTTAGTAGCACCA
* * *
18791 TTTTCTTTTATCCTTTTCAAAGCCCACACAAGTTGGTAGCACCC
1 TTTTC-----T-CTTTT-TAAGCCCACACAAGTTAGTAGCACCA
* * * * * * * *
18835 GTTTCT-TTTTAAAGCCCCCGCATAAGCTGGTGGTACC-
1 TTTTCTCTTTTTAAG--CCCACACAAGTTAGTAGCACCA
* * * * *
18872 TTTTTTCTTTTTTAGCCCATACAAGTTGGTA-CACCC
1 TTTTCTCTTTTTAAGCCCACACAAGTTAGTAGCACCA
* * * * *
18908 CTTTC-CTTTTAAAGCTCGCACAAGCTT-GTGGCACCA
1 TTTTCTCTTTTTAAGCCCACACAAG-TTAGTAGCACCA
* * *
18944 TTTTATCTTTTTAAGCCTACATAAGTT
1 TTTTCTCTTTTTAAGCCCACACAAGTT
18971 GGTGCCACCC
Statistics
Matches: 187, Mismatches: 51, Indels: 32
0.69 0.19 0.12
Matches are distributed among these distances:
35 19 0.10
36 53 0.28
37 56 0.30
38 26 0.14
39 1 0.01
42 1 0.01
43 5 0.03
44 26 0.14
ACGTcount: A:0.23, C:0.26, G:0.13, T:0.37
Consensus pattern (37 bp):
TTTTCTCTTTTTAAGCCCACACAAGTTAGTAGCACCA
Found at i:19037 original size:36 final size:36
Alignment explanation
Indices: 18803--19511 Score: 283
Period size: 36 Copynumber: 18.8 Consensus size: 36
18793 TTCTTTTATC
* * *
18803 CTTTTCAAAGCCCACACAAGTTGGTAGCACCCGTTT
1 CTTTTTAAAGCCCACACAAGTTGGTGGCACCCTTTT
* * * * *
18839 CTTTTTAAAGCCCCCGCATAAGCTGGTGGTACCTTTTTT
1 CTTTTTAAAG--CCCACACAAGTTGGTGGCACC-CTTTT
* * * *
18878 CTTTTT-TAGCCCATACAAGTTGGT-ACACCCCTTT
1 CTTTTTAAAGCCCACACAAGTTGGTGGCACCCTTTT
* * * *
18912 CCTTTTAAAGCTCGCACAAGCTT-GTGGCACCATTTTAT
1 CTTTTTAAAGCCCACACAAG-TTGGTGGCACC-CTTT-T
* * *
18950 CTTTTT-AAGCCTACATAAGTTGGTGCCACCCTTTTTT
1 CTTTTTAAAGCCCACACAAGTTGGTGGCACCC--TTTT
* *
18987 CATCCTTTTCAAAGCCCACATAAGTTGGTGGCACCCCTTT
1 C-T--TTTT-AAAGCCCACACAAGTTGGTGGCACCCTTTT
** * * * *
19027 CTTTTTAAAGCCCGTATAAGCTGATGACA-CCTTATT
1 CTTTTTAAAGCCCACACAAGTTGGTGGCACCCTT-TT
* *
19063 CTTTTTTTAAGACCACACAAGTTGGTGGCACCCCTTTCTTTTTTT
1 C-TTTTTAAAGCCCACACAAGTTGGTGGCA--CC---C---TTTT
* *
19108 CTTTTTAAAGCCCAAACAAGTTGGTGGTA-CCTCTTT
1 CTTTTTAAAGCCCACACAAGTTGGTGGCACCCT-TTT
** * * *
19144 CTTTTTAAAGCCTGCACAA---GCTGGCAGCATTTT
1 CTTTTTAAAGCCCACACAAGTTGGTGGCACCCTTTT
* ** * * *
19177 -TTTCTAAAGCCTGCAAAAGCTGGTGGCACCTTTTT
1 CTTTTTAAAGCCCACACAAGTTGGTGGCACCCTTTT
* * *
19212 CTTTTCTTAATCCCACAAAAGTTGGTGGCACCTTTCTCTTTTAT
1 CTTTT-TAAAGCCCACACAAGTTGGTGGCA-C---C-C-TTT-T
*
19256 CCTTTTCAAAGCCCACACAAGTTGGTGGCACTCC-TTT
1 -CTTTTTAAAGCCCACACAAGTTGGTGGCAC-CCTTTT
** ** **
19293 CTTTTTAAAGCCCACACAAGCCGAAGGCACTTTTTTT
1 CTTTTTAAAGCCCACACAAGTTGGTGGCAC-CCTTTT
* * *
19330 CTCTTTTCAAGCCCACATAAGTTGGTGGCGCCCTTTTTTTTT
1 CT-TTTTAAAGCCCACACAAGTTGGTGGCACCC-----TTTT
* ** *
19372 CTTATTAAAGCTTACACAAGTTGGTGAG-ACCC-CTT
1 CTTTTTAAAGCCCACACAAGTTGGTG-GCACCCTTTT
** * * ** *
19407 CTTTTTAAAGCCTGCGCAAGCTGGCAGCACCTTTTT
1 CTTTTTAAAGCCCACACAAGTTGGTGGCACCCTTTT
* * * *
19443 CTCTTTTTAATCCCACACAAGTTGGGGGCACCTTTTTTTT
1 CT-TTTTAAAGCCCACACAAGTTGGTGGCACC---CTTTT
*
19483 CTTTTTAAAGCCCACAGAAGTTGGTGGCA
1 CTTTTTAAAGCCCACACAAGTTGGTGGCA
19512 TCATCTTTAA
Statistics
Matches: 498, Mismatches: 119, Indels: 109
0.69 0.16 0.15
Matches are distributed among these distances:
32 16 0.03
33 8 0.02
34 11 0.02
35 53 0.11
36 101 0.20
37 90 0.18
38 53 0.11
39 33 0.07
40 17 0.03
41 26 0.05
42 30 0.06
43 5 0.01
44 45 0.09
45 8 0.02
46 2 0.00
ACGTcount: A:0.22, C:0.26, G:0.16, T:0.36
Consensus pattern (36 bp):
CTTTTTAAAGCCCACACAAGTTGGTGGCACCCTTTT
Found at i:19084 original size:305 final size:303
Alignment explanation
Indices: 18591--19155 Score: 771
Period size: 305 Copynumber: 1.9 Consensus size: 303
18581 GAGCCTACAT
* * *
18591 AAGTTGGTGGCACCCCTTTCTTTTTAAAGCTCGCACAAGCTGGTGGCACATTTTTCTCTTTTTAA
1 AAGTTGGTGACACCCCTTTCCTTTTAAAGCTCGCACAAGCTGGTGGCACATTTTTATCTTTTTAA
* * * * * * *
18656 GCCTTCATTGTTGGTGGCACTCTTTTTTTTCTTTTTAAAGGCCACATAAGTTGGTAGCACCACTT
66 GCCTACATAGTTGGTGCCACCCTTTTTTTCCTTTTCAAAGCCCACATAAGTTGGTAGCACCACTT
* *
18721 TCTTTTTAAAGCCCGCACAAGCTAGTAGCACCTTTTTCTCTTTTTAAGCCCACACAAGTTACTAG
131 TCTTTTTAAAGCCCGCACAAGCTAGTAGCACCTTATTCTCTTTTTAAGACCACACAAGTTACTAG
* *
18786 CACCATTTTCTTTTATCCTTTTCAAAGCCCACACAAGTTGGTAGCACC-CGTTTCTTTTTAAAGC
196 CACCACTTTCTTTTATCCTTTTCAAAGCCCAAACAAGTTGGTAGCACCTC-TTTCTTTTTAAAGC
18850 CCCCGCATAAGCTGGTGGTACCTTTTTTCTTTTTTAGCCCATAC
260 CCCCGCATAAGCTGGTGGTACCTTTTTTCTTTTTTAGCCCATAC
*
18894 AAGTTGGT-ACACCCCTTTCCTTTTAAAGCTCGCACAAGCTTGTGGCACCA-TTTTATCTTTTTA
1 AAGTTGGTGACACCCCTTTCCTTTTAAAGCTCGCACAAGCTGGTGGCA-CATTTTTATCTTTTTA
*
18957 AGCCTACATAAGTTGGTGCCACCCTTTTTTCATCCTTTTCAAAGCCCACATAAGTTGGTGGCACC
65 AGCCTACAT-AGTTGGTGCCACCCTTTTTT--TCCTTTTCAAAGCCCACATAAGTTGGTAGCACC
* * * *
19022 CCTTTCTTTTTAAAGCCCGTATAAGCT-G-ATGACACCTTATTCTTTTTTTAAGACCACACAAGT
127 ACTTTCTTTTTAAAGCCCGCACAAGCTAGTA-G-CACCTTATTCTCTTTTTAAGACCACACAAGT
** * * * * * * *
19085 TGGTGGCACCCCTTTCTTTTTTTCTTTTTAAAGCCCAAACAAGTTGGTGGTACCTCTTTCTTTTT
190 TACTAGCACCACTTTCTTTTATCCTTTTCAAAGCCCAAACAAGTTGGTAGCACCTCTTTCTTTTT
19150 AAAGCC
255 AAAGCC
19156 TGCACAAGCT
Statistics
Matches: 226, Mismatches: 29, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
302 56 0.25
303 28 0.12
304 2 0.01
305 139 0.62
306 1 0.00
ACGTcount: A:0.22, C:0.26, G:0.15, T:0.38
Consensus pattern (303 bp):
AAGTTGGTGACACCCCTTTCCTTTTAAAGCTCGCACAAGCTGGTGGCACATTTTTATCTTTTTAA
GCCTACATAGTTGGTGCCACCCTTTTTTTCCTTTTCAAAGCCCACATAAGTTGGTAGCACCACTT
TCTTTTTAAAGCCCGCACAAGCTAGTAGCACCTTATTCTCTTTTTAAGACCACACAAGTTACTAG
CACCACTTTCTTTTATCCTTTTCAAAGCCCAAACAAGTTGGTAGCACCTCTTTCTTTTTAAAGCC
CCCGCATAAGCTGGTGGTACCTTTTTTCTTTTTTAGCCCATAC
Found at i:19102 original size:37 final size:37
Alignment explanation
Indices: 19002--19107 Score: 108
Period size: 37 Copynumber: 2.9 Consensus size: 37
18992 TTTTCAAAGC
* *
19002 CCACATAAGTTGGTGGCACCCCTTTC-TTTTTAAAGC
1 CCACATAAGTTGGTGGCACCCCTTTCTTTTTTTAAGA
** * * * *
19038 CCGTATAAGCTGATGACA-CCTTATTCTTTTTTTAAGA
1 CCACATAAGTTGGTGGCACCCCT-TTCTTTTTTTAAGA
*
19075 CCACACAAGTTGGTGGCACCCCTTTCTTTTTTT
1 CCACATAAGTTGGTGGCACCCCTTTCTTTTTTT
19108 CTTTTTAAAG
Statistics
Matches: 52, Mismatches: 15, Indels: 5
0.72 0.21 0.07
Matches are distributed among these distances:
35 3 0.06
36 16 0.31
37 30 0.58
38 3 0.06
ACGTcount: A:0.22, C:0.25, G:0.15, T:0.38
Consensus pattern (37 bp):
CCACATAAGTTGGTGGCACCCCTTTCTTTTTTTAAGA
Found at i:19149 original size:43 final size:44
Alignment explanation
Indices: 19065--19149 Score: 125
Period size: 44 Copynumber: 1.9 Consensus size: 44
19055 ACCTTATTCT
* *
19065 TTTTTTAAGACCACACAAGTTGGTGGCACCCCTTTCTTTTTTTC
1 TTTTTAAAGACCAAACAAGTTGGTGGCACCCCTTTCTTTTTTTC
* * *
19109 TTTTTAAAGCCCAAACAAGTTGGTGGTACCTCTTTCTTTTT
1 TTTTTAAAGACCAAACAAGTTGGTGGCACCCCTTTCTTTTT
19150 AAAGCCTGCA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 36 1.00
ACGTcount: A:0.20, C:0.22, G:0.14, T:0.44
Consensus pattern (44 bp):
TTTTTAAAGACCAAACAAGTTGGTGGCACCCCTTTCTTTTTTTC
Found at i:19152 original size:117 final size:115
Alignment explanation
Indices: 18872--19165 Score: 319
Period size: 115 Copynumber: 2.6 Consensus size: 115
18862 TGGTGGTACC
* * * * *
18872 TTTTTTCTTTTT-TAGCCCATACAAGTTGGT-ACACCCCTTTCCTTTTAAAGCTCGCACAAGCTT
1 TTTTTTCTTTTTAAAGCCCAAACAAGTTGGTGGCACCCCTTTCTTTTTAAAGCCCGCACAAGCTT
* *
18935 GTGGCACCATTTTATCTTTTTAAGCCTACATAAGTTGGTGCCACCCTTTT
66 GTGACACCATTTTATCTTTTTAAGCCTACACAAGTTGGTGCCACCCTTTT
** * * * * * *
18985 TTCATCCTTTTCAAAGCCCACATAAGTTGGTGGCACCCCTTTCTTTTTAAAGCCCGTATAAGC-T
1 TTTTTTCTTTTTAAAGCCCAAACAAGTTGGTGGCACCCCTTTCTTTTTAAAGCCCGCACAAGCTT
* * *
19049 GATGACACC-TTATTCTTTTTTTAAGACC-ACACAAGTTGGTGGCACCCCTTTCT
66 G-TGACACCATT-TTATCTTTTTAAG-CCTACACAAGTTGGTGCCA-CCCTTT-T
* * *
19102 TTTTTTCTTTTTAAAGCCCAAACAAGTTGGTGGTACCTCTTTCTTTTTAAAGCCTGCACAAGCT
1 TTTTTTCTTTTTAAAGCCCAAACAAGTTGGTGGCACCCCTTTCTTTTTAAAGCCCGCACAAGCT
19166 GGCAGCATTT
Statistics
Matches: 145, Mismatches: 28, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
113 8 0.06
114 19 0.13
115 57 0.39
116 8 0.06
117 53 0.37
ACGTcount: A:0.22, C:0.26, G:0.14, T:0.38
Consensus pattern (115 bp):
TTTTTTCTTTTTAAAGCCCAAACAAGTTGGTGGCACCCCTTTCTTTTTAAAGCCCGCACAAGCTT
GTGACACCATTTTATCTTTTTAAGCCTACACAAGTTGGTGCCACCCTTTT
Found at i:19211 original size:32 final size:32
Alignment explanation
Indices: 19145--19213 Score: 86
Period size: 32 Copynumber: 2.2 Consensus size: 32
19135 TACCTCTTTC
* **
19145 TTTT-TAAAGCCTGCACAAGCTGGCAGCATTT
1 TTTTCTAAAGCCTGCAAAAGCTGGCAGCACCT
**
19176 TTTTCTAAAGCCTGCAAAAGCTGGTGGCACCT
1 TTTTCTAAAGCCTGCAAAAGCTGGCAGCACCT
19208 TTTTCT
1 TTTTCT
19214 TTTCTTAATC
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
31 4 0.12
32 28 0.88
ACGTcount: A:0.23, C:0.23, G:0.19, T:0.35
Consensus pattern (32 bp):
TTTTCTAAAGCCTGCAAAAGCTGGCAGCACCT
Found at i:19214 original size:149 final size:149
Alignment explanation
Indices: 19044--19313 Score: 375
Period size: 149 Copynumber: 1.8 Consensus size: 149
19034 AAGCCCGTAT
* *
19044 AAGCTGATGACACCTTATTCTTTTTTTAAGACCACACAAGTTGGTGGCACCCCTTTCT-TTTT-T
1 AAGCTGATGACACCTTATTCTTTTCTTAAGACCACAAAAGTTGGTGGCA--CCTTTCTCTTTTAT
* * * **
19107 TCTTTTTAAAGCCCAAACAAGTTGGTGGTAC-CTCTTTCTTTTTAAAGCCTGCACAAGCTGGCAG
64 CCTTTTCAAAGCCCAAACAAGTTGGTGGCACTC-CTTTCTTTTTAAAGCCCACACAAGCTGGCAG
19171 CATTTTTTTCTAAAGCCTGCAA
128 CATTTTTTTCTAAAGCCTGCAA
* * * **
19193 AAGCTGGTGGCACCTTTTTCTTTTCTTAATCCCACAAAAGTTGGTGGCACCTTTCTCTTTTATCC
1 AAGCTGATGACACCTTATTCTTTTCTTAAGACCACAAAAGTTGGTGGCACCTTTCTCTTTTATCC
*
19258 TTTTCAAAGCCCACACAAGTTGGTGGCACTCCTTTCTTTTTAAAGCCCACACAAGC
66 TTTTCAAAGCCCAAACAAGTTGGTGGCACTCCTTTCTTTTTAAAGCCCACACAAGC
19314 CGAAGGCACT
Statistics
Matches: 105, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
147 7 0.07
148 4 0.04
149 93 0.89
150 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.15, T:0.36
Consensus pattern (149 bp):
AAGCTGATGACACCTTATTCTTTTCTTAAGACCACAAAAGTTGGTGGCACCTTTCTCTTTTATCC
TTTTCAAAGCCCAAACAAGTTGGTGGCACTCCTTTCTTTTTAAAGCCCACACAAGCTGGCAGCAT
TTTTTTCTAAAGCCTGCAA
Found at i:19442 original size:115 final size:113
Alignment explanation
Indices: 18450--19511 Score: 381
Period size: 117 Copynumber: 9.3 Consensus size: 113
18440 GCTAGGAGTA
* * * *
18450 TTTTTCTCTTTTTAAGCCCACACAAGTTGGTGGCAC-CCCTTTCTTTTCAAAGCCTGCACAGGCT
1 TTTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACTCCC-TTCTTTTTAAAGCCTGCACAAGCT
* * * * * * *
18514 AGCAA-CACATTTTTCTTTTTTTAAGCCTACACAAGTTGGTGGCACCCCATTCT
65 -GGAAGCACCTTTTTCTCTTTTTAATCCCACAAAAGTTGGTGGC-GCCC--T-T
* * *
18567 TTTTTTTCTCTTTAGAGCCTACATAAGTTGGTGGCAC-CCCTTTCTTTTTAAAG-CTCGCACAAG
1 TTTTTTTCT-TTTAAAGCCCACACAAGTTGGTGGCACTCCC-TTCTTTTTAAAGCCT-GCACAAG
** * * ** ** * *
18630 CTGGTGGCACATTTTTCTCTTTTTAAGCCTTC-ATTGTTGGTGGCACTC-T
63 CTGGAAGCACCTTTTTCTCTTTTTAATCCCACAAAAGTTGGTGGCGCCCTT
* * * * *
18679 TTTTTTTCTTTTTAAAGGCCACATAAGTTGGTAGCAC-CACTTTCTTTTTAAAGCCCGCACAAGC
1 TTTTTTTC-TTTTAAAGCCCACACAAGTTGGTGGCACTC-CCTTCTTTTTAAAGCCTGCACAAGC
* * * * ** * * *
18743 TAGTAGCACCTTTTTCTCTTTTTAAGCCCACACAAGTTACTAGCACCATT
64 TGGAAGCACCTTTTTCTCTTTTTAATCCCACAAAAGTTGGTGGCGCCCTT
* * *
18793 TTCTTTTATCCTTTTCAAAGCCCACACAAGTTGGTAGCAC-CCGTTTCTTTTTAAAGCCCCCGCA
1 TT-TTTT-T-CTTTT-AAAGCCCACACAAGTTGGTGGCACTCC-CTTCTTTTTAAAG--CCTGCA
* ** * * * * * * *
18857 TAAGCTGGTGGTACCTTTTT-TCTTTTTTAGCCCATACAAGTTGGT-ACACCC--
59 CAAGCTGGAAGCACCTTTTTCTCTTTTTAATCCCACAAAAGTTGGTGGCGCCCTT
* * * * ** * *
18908 --CTTTCCTTTTAAAGCTCGCACAAGCTT-GTGGCAC-CATTTTATCTTTTT-AAGCCTACATAA
1 TTTTTTTCTTTTAAAGCCCACACAAG-TTGGTGGCACTC--CCT-TCTTTTTAAAGCCTGCACAA
* * * * * *
18968 GTTGG-TGCCACCCTTTTTTCATCCTTTTCAAAGCCCACATAAGTTGGTGGCACCC--
62 GCTGGAAG-CA-CC-TTTTTC-T-CTTTT-TAATCCCACAAAAGTTGGTGGCGCCCTT
* * ** * * * * ** * *
19023 -CTTTCT-TTTTAAAGCCCGTATAAGCTGATGACAC-CTTATTCTTTTTTTAAGACC-ACACAAG
1 TTTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACTC-CCTTC-TTTTTAAAG-CCTGCACAAG
* ** * * **
19084 TTGGTGGCACCCCTTTCTTTTTTTCTTTTTAAAGCCCA-AACAAGTTGGTGG-TACC--
63 CTGGAAGCA---C---CTTTTTCTCTTTTT-AATCCCACAA-AAGTTGGTGGCGCCCTT
* * ** * ** *
19139 TCTTTCT-TTTTAAAGCCTGCACAAGCTGGCAGCA-T---TT-TTTTCTAAAGCCTGCAAAAGCT
1 TTTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACTCCCTTCTTTT-TAAAGCCTGCACAAGCT
** *
19198 GGTGGCACCTTTTTCT-TTTCTTAATCCCACAAAAGTTGGTGGC-ACCTT
65 GGAAGCACCTTTTTCTCTTT-TTAATCCCACAAAAGTTGGTGGCGCCCTT
* **
19246 TCTCTTTTATCCTTTTCAAAGCCCACACAAGTTGGTGGCACTCCTTTCTTTTTAAAGCCCACACA
1 T-T-TTTT-T-CTTTT-AAAGCCCACACAAGTTGGTGGCACTCCCTTCTTTTTAAAGCCTGCACA
* * * * *
19311 AGC-CGAAGGCACTTTTTTTCTCTTTTCAAGCCCACATAAGTTGGTGGCGCCCTT
61 AGCTGGAA-GCAC-CTTTTTCTCTTTTTAATCCCACAAAAGTTGGTGGCGCCCTT
** *
19365 TTTTTTTCTTATTAAAGCTTACACAAGTTGGTGAG-AC-CCCTTCTTTTTAAAGCCTGCGCAAGC
1 TTTTTTTCTT-TTAAAGCCCACACAAGTTGGTG-GCACTCCCTTCTTTTTAAAGCCTGCACAAGC
* *
19428 TGGCAGCACCTTTTTCTCTTTTTAATCCCACACAAGTTGG-GG-GCACC-T
64 TGGAAGCACCTTTTTCTCTTTTTAATCCCACAAAAGTTGGTGGCGC-CCTT
*
19476 TTTTTTTCTTTTTAAAGCCCACAGAAGTTGGTGGCA
1 TTTTTTTC-TTTTAAAGCCCACACAAGTTGGTGGCA
19512 TCATCTTTAA
Statistics
Matches: 748, Mismatches: 127, Indels: 146
0.73 0.12 0.14
Matches are distributed among these distances:
105 22 0.03
106 11 0.01
107 2 0.00
108 12 0.02
109 25 0.03
110 19 0.03
111 44 0.06
112 110 0.15
113 65 0.09
114 54 0.07
115 70 0.09
116 21 0.03
117 134 0.18
118 123 0.16
119 35 0.05
120 1 0.00
ACGTcount: A:0.22, C:0.26, G:0.15, T:0.37
Consensus pattern (113 bp):
TTTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACTCCCTTCTTTTTAAAGCCTGCACAAGCTG
GAAGCACCTTTTTCTCTTTTTAATCCCACAAAAGTTGGTGGCGCCCTT
Found at i:19478 original size:37 final size:39
Alignment explanation
Indices: 18609--19511 Score: 180
Period size: 36 Copynumber: 23.8 Consensus size: 39
18599 GGCACCCCTT
* * * * *
18609 TCTTTTTAAAGCTCGCACAAGCTGGTGGCA-CATTTTTC
1 TCTTTTTAAAGCCCACACAAGTTGGGGGCACCTTTTTTC
** ** * *
18647 TCTTTTT-AAGCCTTCA-TTGTTGGTGGCACTCTTTTTTT
1 TCTTTTTAAAGCCCACACAAGTTGGGGGCAC-CTTTTTTC
* * ** **
18685 TCTTTTTAAAGGCCACATAAGTTGGTAGCACC--ACTT-
1 TCTTTTTAAAGCCCACACAAGTTGGGGGCACCTTTTTTC
* * * **
18721 TCTTTTTAAAGCCCGCACAAGCTAGTAGCACC-TTTTTC
1 TCTTTTTAAAGCCCACACAAGTTGGGGGCACCTTTTTTC
**** *
18759 TCTTTTT-AAGCCCACACAAGTTACTAGCACCATTTTCTTTTA
1 TCTTTTTAAAGCCCACACAAGTTGGGGGCACC---TT-TTTTC
* ** **
18801 TCCTTTTCAAAGCCCACACAAGTTGGTAGCACC--CGTT-
1 T-CTTTTTAAAGCCCACACAAGTTGGGGGCACCTTTTTTC
* * * * *
18838 TCTTTTTAAAGCCCCCGCATAAGCTGGTGGTACCTTTTTTC
1 TCTTTTTAAAG--CCCACACAAGTTGGGGGCACCTTTTTTC
* ** **
18879 T-TTTTT--AGCCCATACAAGTT-GGTACACC-CCTTTC
1 TCTTTTTAAAGCCCACACAAGTTGGGGGCACCTTTTTTC
* * * * *
18913 -C-TTTTAAAGCTCGCACAAGCTT-GTGGCACC-ATTTTA
1 TCTTTTTAAAGCCCACACAAG-TTGGGGGCACCTTTTTTC
* * * *
18949 TCTTTTT-AAGCCTACATAAGTTGGTGCCACCCTTTTTTC
1 TCTTTTTAAAGCCCACACAAGTTGGGGGCA-CCTTTTTTC
* * * **
18988 ATCCTTTTCAAAGCCCACATAAGTTGGTGGCACC--CCTT-
1 -T-CTTTTTAAAGCCCACACAAGTTGGGGGCACCTTTTTTC
** * * ** * *
19026 TCTTTTTAAAGCCCGTATAAGCTGATGACACC-TTATTC
1 TCTTTTTAAAGCCCACACAAGTTGGGGGCACCTTTTTTC
* * * *
19064 T-TTTTTTAAGACCACACAAGTTGGTGGCACCCCTTTCTTTTTT
1 TCTTTTTAAAGCCCACACAAGTTGGGGGCA--CC--T-TTTTTC
* * * *
19107 TCTTTTTAAAGCCCAAACAAGTTGGTGGTACC--TCTT-
1 TCTTTTTAAAGCCCACACAAGTTGGGGGCACCTTTTTTC
** * **
19143 TCTTTTTAAAGCCTGCACAAGCTGGCAGCA--TTTTTT-
1 TCTTTTTAAAGCCCACACAAGTTGGGGGCACCTTTTTTC
** * * *
19179 TC----TAAAGCCTGCAAAAGCTGGTGGCACC-TTTTTC
1 TCTTTTTAAAGCCCACACAAGTTGGGGGCACCTTTTTTC
* * * *
19213 T-TTTCTT-AATCCCACAAAAGTTGGTGGCACCTTTCTCTTTTA
1 TCTTT-TTAAAGCCCACACAAGTTGGGGGCACC--T-T-TTTTC
* * **
19255 TCCTTTTCAAAGCCCACACAAGTTGGTGGCA-C-TCCTT-
1 T-CTTTTTAAAGCCCACACAAGTTGGGGGCACCTTTTTTC
** ** *
19292 TCTTTTTAAAGCCCACACAAGCCGAAGGCACTTTTTTTC
1 TCTTTTTAAAGCCCACACAAGTTGGGGGCACCTTTTTTC
* * *
19331 TC-TTTTCAAGCCCACATAAGTTGGTGGCGC-CCTTTTTTTT
1 TCTTTTTAAAGCCCACACAAGTTGG-GG-GCACC-TTTTTTC
* ** * **
19371 TCTTATTAAAGCTTACACAAGTTGGTGAG-ACC---CCT-
1 TCTTTTTAAAGCCCACACAAGTTGG-GGGCACCTTTTTTC
** * * **
19406 TCTTTTTAAAGCCTGCGCAAGCTGGCAGCACC-TTTTTC
1 TCTTTTTAAAGCCCACACAAGTTGGGGGCACCTTTTTTC
* *
19444 TCTTTTT-AATCCCACACAAGTTGGGGGCACCTTTTTTT
1 TCTTTTTAAAGCCCACACAAGTTGGGGGCACCTTTTTTC
* *
19482 TCTTTTTAAAGCCCACAGAAGTTGGTGGCA
1 TCTTTTTAAAGCCCACACAAGTTGGGGGCA
19512 TCATCTTTAA
Statistics
Matches: 636, Mismatches: 158, Indels: 141
0.68 0.17 0.15
Matches are distributed among these distances:
32 21 0.03
33 9 0.01
34 7 0.01
35 36 0.06
36 143 0.22
37 112 0.18
38 96 0.15
39 39 0.06
40 31 0.05
41 29 0.05
42 32 0.05
43 12 0.02
44 69 0.11
ACGTcount: A:0.22, C:0.26, G:0.16, T:0.37
Consensus pattern (39 bp):
TCTTTTTAAAGCCCACACAAGTTGGGGGCACCTTTTTTC
Found at i:20202 original size:20 final size:20
Alignment explanation
Indices: 20165--20218 Score: 81
Period size: 20 Copynumber: 2.6 Consensus size: 20
20155 TTTTACAATT
20165 TGTATCGATACAATAAGTAAA
1 TGTATCGATAC-ATAAGTAAA
* *
20186 TGTATCGAAACATAAGTTAA
1 TGTATCGATACATAAGTAAA
20206 TGTATCGATACAT
1 TGTATCGATACAT
20219 GTCTAAAATG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 20 0.67
21 10 0.33
ACGTcount: A:0.43, C:0.11, G:0.15, T:0.31
Consensus pattern (20 bp):
TGTATCGATACATAAGTAAA
Found at i:21626 original size:13 final size:13
Alignment explanation
Indices: 21608--21696 Score: 70
Period size: 13 Copynumber: 5.9 Consensus size: 13
21598 CATAAAGTGT
21608 TGTATCGATACAA
1 TGTATCGATACAA
21621 TGTATCGATACATAA
1 TGTATCGATAC--AA
21636 GTGTTGTATCGATACAA
1 ----TGTATCGATACAA
21653 TGTATCGATACATAA
1 TGTATCGATAC--AA
21668 GTGTTGTATCGATACAA
1 ----TGTATCGATACAA
21685 TGTATCGATACA
1 TGTATCGATACA
21697 TAAGTTTTGT
Statistics
Matches: 64, Mismatches: 0, Indels: 24
0.73 0.00 0.27
Matches are distributed among these distances:
13 34 0.53
15 4 0.06
17 4 0.06
19 22 0.34
ACGTcount: A:0.35, C:0.13, G:0.18, T:0.34
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:21643 original size:32 final size:32
Alignment explanation
Indices: 21588--21717 Score: 242
Period size: 32 Copynumber: 4.0 Consensus size: 32
21578 TTCAACGATT
21588 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACAT-AAGTGTTGTATCGATACAA
21621 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
21653 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
*
21685 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
21717 T
1 T
21718 ATAAGCTACT
Statistics
Matches: 96, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
32 83 0.86
33 13 0.14
ACGTcount: A:0.35, C:0.12, G:0.18, T:0.35
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTATCGATACAA
Found at i:21645 original size:19 final size:18
Alignment explanation
Indices: 21586--21715 Score: 110
Period size: 19 Copynumber: 7.8 Consensus size: 18
21576 ATTTCAACGA
21586 TTTGTATCGATACATAAAG
1 TTTGTATCGATACAT-AAG
21605 TGTTGTATCGATAC--AA-
1 T-TTGTATCGATACATAAG
21621 --TGTATCGATACATAAG
1 TTTGTATCGATACATAAG
21637 TGTTGTATCGATAC--AA-
1 T-TTGTATCGATACATAAG
21653 --TGTATCGATACATAAG
1 TTTGTATCGATACATAAG
21669 TGTTGTATCGATAC--AA-
1 T-TTGTATCGATACATAAG
21685 --TGTATCGATACATAAG
1 TTTGTATCGATACATAAG
21701 TTTTGTATCGATACA
1 -TTTGTATCGATACA
21716 ATATAAGCTA
Statistics
Matches: 92, Mismatches: 0, Indels: 38
0.71 0.00 0.29
Matches are distributed among these distances:
13 33 0.36
15 6 0.07
17 6 0.07
19 35 0.38
20 12 0.13
ACGTcount: A:0.34, C:0.12, G:0.18, T:0.36
Consensus pattern (18 bp):
TTTGTATCGATACATAAG
Found at i:21776 original size:13 final size:13
Alignment explanation
Indices: 21758--21782 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
21748 ATTACTCAAA
21758 TGTATCGATACAT
1 TGTATCGATACAT
21771 TGTATCGATACA
1 TGTATCGATACA
21783 CTAATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:21835 original size:52 final size:52
Alignment explanation
Indices: 21771--21919 Score: 219
Period size: 52 Copynumber: 2.9 Consensus size: 52
21761 ATCGATACAT
*** *
21771 TGTATCGATACACTAATCTTTGTATCGATACATGCAGGCAAATTTGCCTAGA
1 TGTATCGATACACTAATAAATGTATCGATACATGCAGGCAAATTTGCCCAGA
*
21823 TGTATCGATACACT-ATAAAATGTATCGATACATGGAGGCAAATTTGCCCAGA
1 TGTATCGATACACTAAT-AAATGTATCGATACATGCAGGCAAATTTGCCCAGA
* *
21875 TGTATCGATACACTATTAAATGTATCGATACATGCAAGCAAATTT
1 TGTATCGATACACTAATAAATGTATCGATACATGCAGGCAAATTT
21920 TCATATTTCG
Statistics
Matches: 87, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
51 2 0.02
52 84 0.97
53 1 0.01
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31
Consensus pattern (52 bp):
TGTATCGATACACTAATAAATGTATCGATACATGCAGGCAAATTTGCCCAGA
Found at i:26261 original size:52 final size:52
Alignment explanation
Indices: 26191--26309 Score: 220
Period size: 52 Copynumber: 2.3 Consensus size: 52
26181 GAAAATTTAT
*
26191 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
*
26243 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
26295 CTGCATGTATCGATA
1 CTGCATGTATCGATA
26310 TAAAGATCAA
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 65 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (52 bp):
CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
Found at i:26322 original size:52 final size:52
Alignment explanation
Indices: 26191--26332 Score: 198
Period size: 52 Copynumber: 2.7 Consensus size: 52
26181 GAAAATTTAT
* *
26191 CTGCATGTATCGATACATTTA-ATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TAAGATAATGTATCGATACATCTGGGCAAATTTGC
***
26243 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATAAGATAATGTATCGATACATCTGGGCAAATTTGC
*
26295 CTGCATGTATCGATATA-AAGATCAATGTATCGATACAT
1 CTGCATGTATCGATACATAAGAT-AATGTATCGATACAT
26333 TTCTTTGGCA
Statistics
Matches: 82, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
51 4 0.05
52 78 0.95
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.35
Consensus pattern (52 bp):
CTGCATGTATCGATACATAAGATAATGTATCGATACATCTGGGCAAATTTGC
Found at i:26392 original size:13 final size:13
Alignment explanation
Indices: 26374--26398 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26364 CAAAAAAATA
26374 TGTATCGATACAT
1 TGTATCGATACAT
26387 TGTATCGATACA
1 TGTATCGATACA
26399 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:26394 original size:33 final size:33
Alignment explanation
Indices: 26352--26418 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
26342 AGTAGCTTAA
26352 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
26385 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
26418 A
1 A
26419 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:29929 original size:79 final size:77
Alignment explanation
Indices: 29846--30325 Score: 364
Period size: 79 Copynumber: 6.1 Consensus size: 77
29836 CATTTCCCAA
*
29846 GGGATACTCCAACCCCGTTTTTACTTCCCAAATATCAAATTTTTCATCTTGGGGATACTCCAACC
1 GGGATACTCCAACCCCGTTTTTACTTCCAAAATAT-AAATTTTTCATCTTGGGGATACTCCAACC
* ** *
29911 CCACCATCACTAAG
65 CCATCAT-TTTGAG
* * * ** * * ** *
29925 GGGATACTTCGACTCTATTTTTATTTTCAAAATATTGATTTTTCA-CTATCAGGGATACTCCAAC
1 GGGATACTCCAACCCCGTTTTTACTTCCAAAATATAAATTTTTCATCT-T-GGGGATACTCCAAC
29989 CCCATCATTTTCGAG
64 CCCATCATTTT-GAG
** *
30004 GGGATACTCCAACCATGTTTTTACTTCCAAAATATTGAAA-TTTTCATCTTGGGGATACTCCGAC
1 GGGATACTCCAACCCCGTTTTTACTTCCAAAATA-T-AAATTTTTCATCTTGGGGATACTCCAAC
* *
30068 CCCACCATCTATGAG
64 CCCATCAT-TTTGAG
* * * * * *
30083 GGGATACTCCAACCCC-ATTTTATTTTCAAAATATTAATTTTTCACCATTGAGGATACTCCAACC
1 GGGATACTCCAACCCCGTTTTTACTTCCAAAATATAAATTTTTCATC-TTGGGGATACTCCAACC
* *
30147 CTATCATTTTTCAG
65 CCATCA-TTTTGAG
*** **
30161 GGGATACTCCAACCTTTTTTTTTA-TTATTAAAATATCAAATTTTTAGCATC--GGGGATACTCC
1 GGGATACTCCAACC-CCGTTTTTACTT-CCAAAATAT-AAATTTTT--CATCTTGGGGATACTCC
*
30223 AACACCATCATTTTCGAG
61 AACCCCATCATTTT-GAG
* * * * * *
30241 AGGATACTCCAACCCCCTTTTTACTTCCAAAATATTAAATTTATAATCATCGAAGG-TACTCCAA
1 GGGATACTCCAACCCCGTTTTTACTTCCAAAATA-TAAATTTTTCATC-TTG-GGGATACTCCAA
*
30305 CCCCAT-ATTCTGAG
63 CCCCATCATTTTGAG
30319 GGGATAC
1 GGGATAC
30326 ACCATCCATG
Statistics
Matches: 315, Mismatches: 63, Indels: 47
0.74 0.15 0.11
Matches are distributed among these distances:
76 2 0.01
77 13 0.04
78 70 0.22
79 142 0.45
80 73 0.23
81 12 0.04
83 3 0.01
ACGTcount: A:0.29, C:0.25, G:0.12, T:0.34
Consensus pattern (77 bp):
GGGATACTCCAACCCCGTTTTTACTTCCAAAATATAAATTTTTCATCTTGGGGATACTCCAACCC
CATCATTTTGAG
Found at i:30071 original size:158 final size:156
Alignment explanation
Indices: 29800--30325 Score: 494
Period size: 158 Copynumber: 3.3 Consensus size: 156
29790 TTCCAAAAGC
* * ** * * *
29800 ATTGATTTTTCACCATCGGGGATACTCTAACTACATCATTTCCCAAGGGATACTCCAACCCCGTT
1 ATTGATTTTTCACCATCAGGGATACTCCAACCCCATCATTT-TCAGGGGATACTCCAACCACGTT
*
29865 TTTACTTCCCAAATATCAAATTTTTCATCTTGGGGATACTCCAACCCCACCATC-ACTAAGGGGA
65 TTTACTTCCAAAATATCAAATTTTTCATCTTGGGGATACTCCAACCCCACCATCTA-TAAGGGGA
* * * *
29929 TACTTCGACTCTATTTTTATTTTCAAAAT
129 TACTCCAACCCCA-TTTTATTTTCAAAAT
* *
29958 ATTGATTTTTCACTATCAGGGATACTCCAACCCCATCATTTTCGAGGGGATACTCCAACCATGTT
1 ATTGATTTTTCACCATCAGGGATACTCCAACCCCATCATTTTC-AGGGGATACTCCAACCACGTT
* * *
30023 TTTACTTCCAAAATATTGAAA-TTTTCATCTTGGGGATACTCCGACCCCACCATCTATGAGGGGA
65 TTTACTTCCAAAATA-TCAAATTTTTCATCTTGGGGATACTCCAACCCCACCATCTATAAGGGGA
30087 TACTCCAACCCCATTTTATTTTCAAAAT
129 TACTCCAACCCCATTTTATTTTCAAAAT
* * * ***
30115 ATTAATTTTTCACCAT-TGAGGATACTCCAACCCTATCATTTTTCAGGGGATACTCCAACCTTTT
1 ATTGATTTTTCACCATCAG-GGATACTCCAACCCCATCA-TTTTCAGGGGATACTCCAACC-ACG
** * * * *
30179 TTTTTA-TTATTAAAATATCAAATTTTTAGCATC--GGGGATACTCCAACACCATCAT-TTTCGA
63 TTTTTACTT-CCAAAATATCAAATTTTT--CATCTTGGGGATACTCCAACCCCACCATCTAT-AA
* * * *
30240 GAGGATACTCCAACCCCCTTTTTACTTCCAAAAT
124 GGGGATACTCCAA-CCCCATTTTATTTTCAAAAT
* * * * * * *
30274 ATTAAATTTATAATCATCGAAGG-TACTCCAACCCCAT-ATTCTGAGGGGATAC
1 ATT-GATTTTTCACCATC-AGGGATACTCCAACCCCATCATTTTCAGGGGATAC
30326 ACCATCCATG
Statistics
Matches: 311, Mismatches: 42, Indels: 30
0.81 0.11 0.08
Matches are distributed among these distances:
156 1 0.00
157 72 0.23
158 183 0.59
159 26 0.08
160 27 0.09
161 2 0.01
ACGTcount: A:0.29, C:0.25, G:0.12, T:0.34
Consensus pattern (156 bp):
ATTGATTTTTCACCATCAGGGATACTCCAACCCCATCATTTTCAGGGGATACTCCAACCACGTTT
TTACTTCCAAAATATCAAATTTTTCATCTTGGGGATACTCCAACCCCACCATCTATAAGGGGATA
CTCCAACCCCATTTTATTTTCAAAAT
Found at i:30233 original size:237 final size:236
Alignment explanation
Indices: 29846--30282 Score: 560
Period size: 237 Copynumber: 1.8 Consensus size: 236
29836 CATTTCCCAA
* * * *
29846 GGGATACTCCAACCCCGTTTTTACTTCCCAAATATCAAATTTTTCATCTTGGGGATACTCCAACC
1 GGGATACTCCAACCCCGATTTTACTTCCAAAATATCAAATTTTTCACCTTGAGGATACTCCAACC
* * **
29911 CCACCATCACTAAGGGGATACTTCGACTCTATTTTTATTTTCAAAATATTGATTTTTCACTATCA
66 CCACCATCACTAAGGGGATACTCCAACTCTATTTTTATTTTCAAAATATAAATTTTTCACTATCA
* * **
29976 GGGATACTCCAACCCCATCATTTTCGAGGGGATACTCCAACCATGTTTTTACTTCCAAAATATTG
131 GGGATACTCCAACACCATCATTTTCGAGAGGATACTCCAACCACCTTTTTACTTCCAAAATATT-
30041 AAATTTTCATCTTGGGGATACTCCGACCCCACCATCTATGAG
195 AAATTTTCATCTTGGGGATACTCCGACCCCACCATCTATGAG
* * *
30083 GGGATACTCCAACCCC-ATTTTATTTTCAAAATAT-TAATTTTTCACCATTGAGGATACTCCAAC
1 GGGATACTCCAACCCCGATTTTACTTCCAAAATATCAAATTTTTCACC-TTGAGGATACTCCAAC
* * *** * * *
30146 CCTATCATTTTTCAGGGGATACTCCAACCTTTTTTTTTATTATT-AAAATATCAAATTTTT-AGC
65 CCCACCATCACTAAGGGGATACTCCAA-CTCTATTTTTATT-TTCAAAATAT-AAATTTTTCA-C
* *
30209 -ATCGGGGATACTCCAACACCATCATTTTCGAGAGGATACTCCAACCCCCTTTTTACTTCCAAAA
126 TATCAGGGATACTCCAACACCATCATTTTCGAGAGGATACTCCAACCACCTTTTTACTTCCAAAA
30273 TATTAAATTT
191 TATTAAATTT
30283 ATAATCATCG
Statistics
Matches: 170, Mismatches: 25, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
235 10 0.06
236 54 0.32
237 97 0.57
238 9 0.05
ACGTcount: A:0.29, C:0.25, G:0.11, T:0.35
Consensus pattern (236 bp):
GGGATACTCCAACCCCGATTTTACTTCCAAAATATCAAATTTTTCACCTTGAGGATACTCCAACC
CCACCATCACTAAGGGGATACTCCAACTCTATTTTTATTTTCAAAATATAAATTTTTCACTATCA
GGGATACTCCAACACCATCATTTTCGAGAGGATACTCCAACCACCTTTTTACTTCCAAAATATTA
AATTTTCATCTTGGGGATACTCCGACCCCACCATCTATGAG
Found at i:34913 original size:13 final size:13
Alignment explanation
Indices: 34895--34922 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
34885 TACAAAAGAT
34895 CAATGTATCGATA
1 CAATGTATCGATA
34908 CAATGTATCGATA
1 CAATGTATCGATA
34921 CA
1 CA
34923 TTTGAGTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:35008 original size:32 final size:34
Alignment explanation
Indices: 34967--35039 Score: 96
Period size: 32 Copynumber: 2.2 Consensus size: 34
34957 AGCTTCGTAA
*
34967 CGATACATTGTATCAATATA-AAACT-TTTGTAT
1 CGATACATTGTATCAATACAGAAACTGTTTGTAT
* **
34999 CGATACATTGTATCGATACAGTTACTGTTTGTAT
1 CGATACATTGTATCAATACAGAAACTGTTTGTAT
35033 CGATACA
1 CGATACA
35040 AATTGTTGGA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
32 18 0.51
33 3 0.09
34 14 0.40
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.38
Consensus pattern (34 bp):
CGATACATTGTATCAATACAGAAACTGTTTGTAT
Found at i:35011 original size:13 final size:13
Alignment explanation
Indices: 34993--35018 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
34983 TATAAAACTT
34993 TTGTATCGATACA
1 TTGTATCGATACA
35006 TTGTATCGATACA
1 TTGTATCGATACA
35019 GTTACTGTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:35101 original size:21 final size:20
Alignment explanation
Indices: 35077--35115 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
35067 GTTGGGACCT
*
35077 TGTATTGATACATTCTAGAAA
1 TGTATCGATACATT-TAGAAA
35098 TGTATCGATACATTTAGA
1 TGTATCGATACATTTAGA
35116 TAAAAATGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.36, C:0.10, G:0.15, T:0.38
Consensus pattern (20 bp):
TGTATCGATACATTTAGAAA
Found at i:35945 original size:49 final size:49
Alignment explanation
Indices: 35874--36144 Score: 277
Period size: 49 Copynumber: 5.6 Consensus size: 49
35864 CCAATACGCT
** *
35874 TGATTCAAGGCCAATGATATTGGACTTAAAGACGAAGGTGCCAATGTGC
1 TGATTCAAGGCCAGCGACATTGGACTTAAAGACGAAGGTGCCAATGTGC
* ** *
35923 TGATTCAAGACCAGCGACATTGG--TT--TTA--AAGGTGCCAATCTGC
1 TGATTCAAGGCCAGCGACATTGGACTTAAAGACGAAGGTGCCAATGTGC
* * * *
35966 TGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGATACCAATGTGC
1 TGATTCAAGGCCAGCGACATTGGACTTAAAGACGAAGGTGCCAATGTGC
* * ** *
36015 TGATTCAAGGCCGGCGACCTTGGACTTAAAGGTGGTTAAGGTTCCAATGTGC
1 TGATTCAAGGCCAGCGACATTGGACTTAAA-GACG--AAGGTGCCAATGTGC
* * * *
36067 TGAGTCAAGGCCAGTGACATTGGTCTTAAAGAC-AAGGTGCCAATATGC
1 TGATTCAAGGCCAGCGACATTGGACTTAAAGACGAAGGTGCCAATGTGC
*
36115 TGATTCAAGGCCAGCGATATTGGACTTAAA
1 TGATTCAAGGCCAGCGACATTGGACTTAAA
36145 AGTGCCACGG
Statistics
Matches: 179, Mismatches: 34, Indels: 19
0.77 0.15 0.08
Matches are distributed among these distances:
43 35 0.20
45 3 0.02
47 3 0.02
48 39 0.22
49 58 0.32
50 2 0.01
51 1 0.01
52 38 0.21
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.25
Consensus pattern (49 bp):
TGATTCAAGGCCAGCGACATTGGACTTAAAGACGAAGGTGCCAATGTGC
Found at i:35995 original size:43 final size:43
Alignment explanation
Indices: 35908--36151 Score: 182
Period size: 43 Copynumber: 5.2 Consensus size: 43
35898 CTTAAAGACG
* **
35908 AAGGTGCCAATGTGCTGATTCAAGACCAGCGACATTGGTTTTA
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTA
* *
35951 AAGGTGCCAATCTGCTGATTCAAGGCCAGCGATATTGGACTTAA
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT-A
* * *
35995 AGATGAAGATACCAATGTGCTGATTCAAGGCCGGCGACCTTGGACTTA
1 A-A-G--G-TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTA
* * *
36043 AAGGTGGTTAAGGTTCCAATGTGCTGAGTCAAGGCCAGTGACATTGGTCTTAAAGA
1 AA---GG-T---G--CCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT----A
* *
36099 CAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
1 -AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTA
*
36143 AAAGTGCCA
1 AAGGTGCCA
36152 CGGAGTTGTG
Statistics
Matches: 160, Mismatches: 23, Indels: 36
0.73 0.11 0.16
Matches are distributed among these distances:
43 45 0.28
44 3 0.02
45 1 0.01
46 1 0.01
47 3 0.02
48 34 0.21
49 35 0.22
50 1 0.01
52 31 0.19
53 1 0.01
54 2 0.01
56 1 0.01
57 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.25
Consensus pattern (43 bp):
AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTA
Found at i:36013 original size:92 final size:93
Alignment explanation
Indices: 35855--36048 Score: 266
Period size: 92 Copynumber: 2.1 Consensus size: 93
35845 CTTAGGAATG
* * * *
35855 TTAAAGATGCCAATACGCTTGATTCAAGGCCAATGATATTGGACTTAAAGACGAAGGTGCCAATG
1 TTAAAGGTGCCAATACGCTTGATTCAAGGCCAACGATATTGGACTTAAAGACGAAGATACCAATG
**
35920 TGCTGATTCAAGACCAGCGACATTGGTT
66 TGCTGATTCAAGACCAGCGACATTGGAC
* *
35948 TTAAAGGTGCCAAT-CTGC-TGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGATACCAAT
1 TTAAAGGTGCCAATAC-GCTTGATTCAAGGCCAACGATATTGGACTTAAAGACGAAGATACCAAT
* * *
36011 GTGCTGATTCAAGGCCGGCGACCTTGGAC
65 GTGCTGATTCAAGACCAGCGACATTGGAC
36040 TTAAAGGTG
1 TTAAAGGTG
36049 GTTAAGGTTC
Statistics
Matches: 89, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
92 74 0.83
93 15 0.17
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (93 bp):
TTAAAGGTGCCAATACGCTTGATTCAAGGCCAACGATATTGGACTTAAAGACGAAGATACCAATG
TGCTGATTCAAGACCAGCGACATTGGAC
Found at i:36188 original size:33 final size:32
Alignment explanation
Indices: 36146--36254 Score: 140
Period size: 27 Copynumber: 3.5 Consensus size: 32
36136 GGACTTAAAA
36146 GTGCCACGGAGTTGTGTG-CTTAAAAGGAACAAG
1 GTGCCACGGAGTTGTG-GACTTAAAAGG-ACAAG
36179 GTGCCACGGAGTTGTGGACTTAAAA-G----G
1 GTGCCACGGAGTTGTGGACTTAAAAGGACAAG
*
36206 GTGCCACGGAGTTGTGGATTTAAAAGGACAAG
1 GTGCCACGGAGTTGTGGACTTAAAAGGACAAG
*
36238 GGGCCACGGAGTTGTGG
1 GTGCCACGGAGTTGTGG
36255 GCTTTTGAAG
Statistics
Matches: 68, Mismatches: 2, Indels: 13
0.82 0.02 0.16
Matches are distributed among these distances:
27 25 0.37
28 1 0.01
32 19 0.28
33 23 0.34
ACGTcount: A:0.27, C:0.15, G:0.38, T:0.21
Consensus pattern (32 bp):
GTGCCACGGAGTTGTGGACTTAAAAGGACAAG
Found at i:36213 original size:27 final size:27
Alignment explanation
Indices: 36135--36232 Score: 103
Period size: 27 Copynumber: 3.5 Consensus size: 27
36125 CCAGCGATAT
36135 TGGACTTAAAA--GTGCCACGGAGTTG
1 TGGACTTAAAAGGGTGCCACGGAGTTG
36160 TGTG-CTTAAAAGGAACAAGGTGCCACGGAGTTG
1 TG-GACTTAAAA-G-----GGTGCCACGGAGTTG
36193 TGGACTTAAAAGGGTGCCACGGAGTTG
1 TGGACTTAAAAGGGTGCCACGGAGTTG
*
36220 TGGATTTAAAAGG
1 TGGACTTAAAAGG
36233 ACAAGGGGCC
Statistics
Matches: 62, Mismatches: 1, Indels: 18
0.77 0.01 0.22
Matches are distributed among these distances:
25 9 0.15
26 1 0.02
27 27 0.44
32 2 0.03
33 23 0.37
ACGTcount: A:0.30, C:0.13, G:0.34, T:0.23
Consensus pattern (27 bp):
TGGACTTAAAAGGGTGCCACGGAGTTG
Found at i:36272 original size:60 final size:60
Alignment explanation
Indices: 36135--36254 Score: 185
Period size: 60 Copynumber: 2.0 Consensus size: 60
36125 CCAGCGATAT
*
36135 TGGACTTAAAA--GTGCCACGGAGTTGTGTGCTTAAAAGGAACAAGGTGCCACGGAGTTG
1 TGGACTTAAAAGGGTGCCACGGAGTTGTGTGCTTAAAAGGAACAAGGGGCCACGGAGTTG
*
36193 TGGACTTAAAAGGGTGCCACGGAGTTGTG-GATTTAAAAGG-ACAAGGGGCCACGGAGTTG
1 TGGACTTAAAAGGGTGCCACGGAGTTGTGTG-CTTAAAAGGAACAAGGGGCCACGGAGTTG
36252 TGG
1 TGG
36255 GCTTTTGAAG
Statistics
Matches: 57, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
58 11 0.19
59 22 0.39
60 24 0.42
ACGTcount: A:0.28, C:0.14, G:0.36, T:0.22
Consensus pattern (60 bp):
TGGACTTAAAAGGGTGCCACGGAGTTGTGTGCTTAAAAGGAACAAGGGGCCACGGAGTTG
Found at i:36308 original size:29 final size:29
Alignment explanation
Indices: 36249--36495 Score: 268
Period size: 29 Copynumber: 8.6 Consensus size: 29
36239 GGCCACGGAG
* * **
36249 TTGTGGGCTTTTG-AAGGTTGCCACTGCC
1 TTGTGGGCTTTTGAAAAGATGCCACTAAC
*
36277 TTGTGGGCTTTGGAAAAGATGCCACTAAC
1 TTGTGGGCTTTTGAAAAGATGCCACTAAC
* * *
36306 TTGTGGGCTTTGGAAAATAGTGCCACTGAC
1 TTGTGGGCTTTTGAAAAGA-TGCCACTAAC
*
36336 TTGTGGGCTTTGGAAAAGAGTGCCACTAAC
1 TTGTGGGCTTTTGAAAAGA-TGCCACTAAC
*
36366 TTGTGGGCTTTTGAAAAGACGCCACTAAC
1 TTGTGGGCTTTTGAAAAGATGCCACTAAC
* * **
36395 TTGTGGGC-TTTG-AAGGTTGCCACTGCC
1 TTGTGGGCTTTTGAAAAGATGCCACTAAC
* *
36422 TTGTGGGC-TTTGAAAAGGGTGCCACTGAC
1 TTGTGGGCTTTTGAAAA-GATGCCACTAAC
* *
36451 TTGTGGGATTTTGAAAAGATGCCATTAAC
1 TTGTGGGCTTTTGAAAAGATGCCACTAAC
*
36480 TTGTGAGCTTTTGAAA
1 TTGTGGGCTTTTGAAA
36496 GTGAGGAATG
Statistics
Matches: 189, Mismatches: 25, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
27 22 0.12
28 18 0.10
29 86 0.46
30 63 0.33
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.31
Consensus pattern (29 bp):
TTGTGGGCTTTTGAAAAGATGCCACTAAC
Found at i:36342 original size:59 final size:59
Alignment explanation
Indices: 36249--36495 Score: 301
Period size: 59 Copynumber: 4.3 Consensus size: 59
36239 GGCCACGGAG
*
36249 TTGTGGGCTTTTG--AAG-GTTGCCACTGCCTTGTGGGCTTTGGAAAAGATGCCACTAAC
1 TTGTGGGCTTTTGAAAAGAG-TGCCACTGACTTGTGGGCTTTGGAAAAGATGCCACTAAC
* *
36306 TTGTGGGCTTTGGAAAATAGTGCCACTGACTTGTGGGCTTTGGAAAAGAGTGCCACTAAC
1 TTGTGGGCTTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGGAAAAGA-TGCCACTAAC
* * * * **
36366 TTGTGGGCTTTTGAAAAGA-CGCCACTAACTTGTGGGCTTT-G-AAGGTTGCCACTGCC
1 TTGTGGGCTTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGGAAAAGATGCCACTAAC
* * * *
36422 TTGTGGGC-TTTGAAAAGGGTGCCACTGACTTGTGGGATTTTGAAAAGATGCCATTAAC
1 TTGTGGGCTTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGGAAAAGATGCCACTAAC
*
36480 TTGTGAGCTTTTGAAA
1 TTGTGGGCTTTTGAAA
36496 GTGAGGAATG
Statistics
Matches: 161, Mismatches: 21, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
55 9 0.06
56 34 0.21
57 16 0.10
58 18 0.11
59 56 0.35
60 28 0.17
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.31
Consensus pattern (59 bp):
TTGTGGGCTTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGGAAAAGATGCCACTAAC
Found at i:37925 original size:1 final size:1
Alignment explanation
Indices: 37919--38008 Score: 54
Period size: 1 Copynumber: 90.0 Consensus size: 1
37909 ATCCGGACCC
* * * * ** * * * * *
37919 TTTTTTTGTTTGTTTTTTCTTTCTTTTTTTTTTTTTTTGCTTTTGTTTGTTTTGTTTTGTTTTTG
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * *
37984 TTTTTGTTTTTGTTGTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTT
38009 GTAGAGGACG
Statistics
Matches: 62, Mismatches: 27, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
1 62 1.00
ACGTcount: A:0.00, C:0.03, G:0.12, T:0.84
Consensus pattern (1 bp):
T
Found at i:37957 original size:31 final size:33
Alignment explanation
Indices: 37919--38004 Score: 88
Period size: 31 Copynumber: 2.5 Consensus size: 33
37909 ATCCGGACCC
37919 TTTTTTTGTTTGTTTTTT-CTTTCTTTTT-TTT
1 TTTTTTTGTTTGTTTTTTGCTTTCTTTTTGTTT
* *
37950 TTTTTTTGCTTTTGTTTGTTTTGTTTTGTTTTTGTTT
1 TTTTTTTG--TTTG-TT-TTTTGCTTTCTTTTTGTTT
37987 TTGTTTTTG-TTGTTTTTT
1 TT-TTTTTGTTTGTTTTTT
38005 TTTTGTAGAG
Statistics
Matches: 46, Mismatches: 2, Indels: 12
0.77 0.03 0.20
Matches are distributed among these distances:
31 8 0.17
33 8 0.17
34 4 0.09
35 7 0.15
36 8 0.17
37 5 0.11
38 6 0.13
ACGTcount: A:0.00, C:0.03, G:0.13, T:0.84
Consensus pattern (33 bp):
TTTTTTTGTTTGTTTTTTGCTTTCTTTTTGTTT
Found at i:37962 original size:26 final size:25
Alignment explanation
Indices: 37920--38010 Score: 101
Period size: 26 Copynumber: 3.5 Consensus size: 25
37910 TCCGGACCCT
* * *
37920 TTTTTTGTTTGTTTTTTCTTTCTTTTT
1 TTTTTTTTTTG-TTTTTGTTT-TTTTG
*
37947 TTTTTTTTTTGCTTTTGTTTGTTTTG
1 TTTTTTTTTTGTTTTTGTTT-TTTTG
*
37973 TTTTGTTTTTGTTTTTGTTTTTGTTG
1 TTTTTTTTTTGTTTTTGTTTTT-TTG
37999 TTTTTTTTTTGT
1 TTTTTTTTTTGT
38011 AGAGGACGCC
Statistics
Matches: 55, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
25 2 0.04
26 43 0.78
27 10 0.18
ACGTcount: A:0.00, C:0.03, G:0.13, T:0.84
Consensus pattern (25 bp):
TTTTTTTTTTGTTTTTGTTTTTTTG
Found at i:37970 original size:37 final size:38
Alignment explanation
Indices: 37922--37995 Score: 107
Period size: 37 Copynumber: 2.0 Consensus size: 38
37912 CGGACCCTTT
*
37922 TTTTGTTTGTTTTTTCTTTCTTTTT-TTTTT-TTTTTGC
1 TTTTGTTTGTTTTGT-TTTCTTTTTGTTTTTGTTTTTGC
*
37959 TTTTGTTTGTTTTGTTTTGTTTTTGTTTTTGTTTTTG
1 TTTTGTTTGTTTTGTTTTCTTTTTGTTTTTGTTTTTG
37996 TTGTTTTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
36 8 0.24
37 19 0.58
38 6 0.18
ACGTcount: A:0.00, C:0.04, G:0.14, T:0.82
Consensus pattern (38 bp):
TTTTGTTTGTTTTGTTTTCTTTTTGTTTTTGTTTTTGC
Found at i:38009 original size:32 final size:31
Alignment explanation
Indices: 37919--38010 Score: 96
Period size: 32 Copynumber: 2.8 Consensus size: 31
37909 ATCCGGACCC
* *
37919 TTTTT-TTGTTTGTTTTTTCTTTCTTTTTTTTTT
1 TTTTTGTT-TTTGTTTTTT-TTT-TTTGTTTTTG
* *
37952 TTTTTGCTTTTGTTTGTTTTGTTTTGTTTTTG
1 TTTTTGTTTTTGTTT-TTTTTTTTTGTTTTTG
37984 TTTTTGTTTTTGTTGTTTTTTTTTTGT
1 TTTTTGTTTTTGTT-TTTTTTTTTTGT
38011 AGAGGACGCC
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
32 31 0.62
33 15 0.30
34 4 0.08
ACGTcount: A:0.00, C:0.03, G:0.13, T:0.84
Consensus pattern (31 bp):
TTTTTGTTTTTGTTTTTTTTTTTTGTTTTTG
Found at i:51930 original size:13 final size:13
Alignment explanation
Indices: 51912--51937 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
51902 AAATTTTCAG
51912 ATGTATCGATACA
1 ATGTATCGATACA
51925 ATGTATCGATACA
1 ATGTATCGATACA
51938 TTTGAGTAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:52014 original size:19 final size:19
Alignment explanation
Indices: 51990--52075 Score: 67
Period size: 19 Copynumber: 4.7 Consensus size: 19
51980 AGCGATACAT
51990 TGTATCGATACAAAACTTA
1 TGTATCGATACAAAACTTA
52009 TGTATCGATAC---A-TTA
1 TGTATCGATACAAAACTTA
* *
52024 --TATCAATACAACACTTA
1 TGTATCGATACAAAACTTA
** *
52041 TGTATCGATACAGTTACTCTT
1 TGTATCGATACA-AAACT-TA
52062 TGTATCGATACAAA
1 TGTATCGATACAAA
52076 TTGTTGAAAT
Statistics
Matches: 52, Mismatches: 7, Indels: 15
0.70 0.09 0.20
Matches are distributed among these distances:
13 8 0.15
15 3 0.06
16 2 0.04
17 3 0.06
19 20 0.38
20 3 0.06
21 13 0.25
ACGTcount: A:0.37, C:0.17, G:0.10, T:0.35
Consensus pattern (19 bp):
TGTATCGATACAAAACTTA
Found at i:52033 original size:32 final size:32
Alignment explanation
Indices: 51982--52052 Score: 115
Period size: 32 Copynumber: 2.2 Consensus size: 32
51972 AGCTTCGTAG
* *
51982 CGATACATTGTATCGATACAAAACTTATGTAT
1 CGATACATTATATCAATACAAAACTTATGTAT
*
52014 CGATACATTATATCAATACAACACTTATGTAT
1 CGATACATTATATCAATACAAAACTTATGTAT
52046 CGATACA
1 CGATACA
52053 GTTACTCTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.32
Consensus pattern (32 bp):
CGATACATTATATCAATACAAAACTTATGTAT
Found at i:59578 original size:20 final size:20
Alignment explanation
Indices: 59522--59598 Score: 73
Period size: 20 Copynumber: 3.9 Consensus size: 20
59512 ACTGCTAAGG
* *
59522 AAATGTATCGATACATTAAT
1 AAATATATCAATACATTAAT
** *
59542 AAATATATTGATGCATTAAT
1 AAATATATCAATACATTAAT
* *
59562 AAATGTATCAATACATTTAT
1 AAATATATCAATACATTAAT
* *
59582 CATTATATCAATACATT
1 AAATATATCAATACATT
59599 TGGGTTTTTT
Statistics
Matches: 46, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 46 1.00
ACGTcount: A:0.44, C:0.10, G:0.06, T:0.39
Consensus pattern (20 bp):
AAATATATCAATACATTAAT
Found at i:61436 original size:157 final size:155
Alignment explanation
Indices: 60999--62008 Score: 523
Period size: 153 Copynumber: 6.5 Consensus size: 155
60989 CAACGACATG
* * * * * * ** *
60999 AAAGTATCTCGGTAACCCTAAAAGACTCAAAAATGA-ACA-AAAAAAAGTGAACCTCTTTTAAAC
1 AAAGTATTTCGATAACCCTAAAAGACACAGAAATGATACATAAAAAGA-TGAA-CTATCCTAAAT
* * * * * * * * *
61062 ACATACCTTTGGCATAAAAACAACCTAGTGACTACCTAAAATTCAATTAT-AAGGAATTACCAAA
64 ACACACCTTTGGCATAAAAATAACCCAATGACTACCTAAGACTCAGTTGTAAAGAAATTACCAAA
*
61126 ATGCCTTTAGGGTATACCTTCGACGTA
129 ATGCCCTTAGGGTATACCTTCGACGTA
* * * * * * * * * *
61153 AAAGTATCTCAATAACCCT-AAGGGCA-TGAAAAGATA-ATAAAAGGATAAACCTATCCTAGATG
1 AAAGTATTTCGATAACCCTAAAAGACACAGAAATGATACATAAAAAGATGAA-CTATCCTAAATA
* * * *** * * * * * **
61215 CATACCTTTGGCGTAAAAATGACCTGGTGACAACTTAGGACTC-GATT-CAAGGGAAGGTACCAA
65 CACACCTTTGGCATAAAAATAACCCAATGACTACCTAAGACTCAG-TTGTAA-AGAAATTACCAA
* * * *
61278 AATGCCCCTAAGGCATACATTCGACGTA
128 AATGCCCTTAGGGTATACCTTCGACGTA
*
61306 AAAGTATTTTGATAACCCTAAAAGAGCACAGAAATGATACATTAAAAAGATGAACTATCCTAAAT
1 AAAGTATTTCGATAACCCTAAAAGA-CACAGAAATGATACA-TAAAAAGATGAACTATCCTAAAT
*
61371 ACACACCTTTGGCATAAAAACAACCCAATGACTACCTAAGACTCAGTTGTAAAGAAATTACCAAA
64 ACACACCTTTGGCATAAAAATAACCCAATGACTACCTAAGACTCAGTTGTAAAGAAATTACCAAA
* ** ** ** *
61436 ATACCCTTAAAGTGCATTTTCGACGTG
129 ATGCCCTTAGGGTATACCTTCGACGTA
* * * *
61463 AAAGTA-TCCGAATAACCCTAAAGGATACA-AGAA-GAT-CATAAAATGATGAAACCTATCCTAA
1 AAAGTATTTCG-ATAACCCTAAAAGACACAGA-AATGATACATAAAAAGATG-AA-CTATCCTAA
* * * * * *
61524 ATACACACTTTTTGCATAAAAGTGACCCGATGACTACCTAAGACT-A-TTCTACAA-AAATTACC
62 ATACACACCTTTGGCATAAAAATAACCCAATGACTACCTAAGACTCAGTTGTA-AAGAAATTACC
* ** *
61586 AAAATACTGTTAGGGTATACCTTCGACGTG
126 AAAATGCCCTTAGGGTATACCTTCGACGTA
* * * *
61616 AAAGTA-TCCAATAACCCTAAAAGACA-TGAAAATGATAAATAAAAAGATGAACATATCCTAAAT
1 AAAGTATTTCGATAACCCTAAAAGACACAG-AAATGATACATAAAAAGATGAAC-TATCCTAAAT
* ** ** **
61679 GCACACCTTTGGCA-AAAAAGTAACCCAATGACTACCTTGGACTTGGTTGTAGGGAAATTATCCA
64 ACACACCTTTGGCATAAAAA-TAACCCAATGACTACCTAAGACTCAGTTGTAAAGAAATTA-CCA
* * *
61743 AATATGCCCCTAGGGTGTACTTTCGA-GTGA
127 AA-ATGCCCTTAGGGTATACCTTCGACGT-A
* * * * *
61773 AAA-TATATT-GGTAACCAT-ATAGA-ACATGAAAATG-T-CATAAAAGGATGAAACTTATCCCA
1 AAAGTAT-TTCGATAACCCTAAAAGACACA-G-AAATGATACATAAAAAGATG-AAC-TATCCTA
* ** * * * * * * *
61832 AATGCACACCTTTGGCATAAAAAGGACTCGATGACTATCTAGGACT-TGATTCT-AGGAATATTA
61 AATACACACCTTTGGCATAAAAATAACCCAATGACTACCTAAGACTCAG-TTGTAAAGAA-ATTA
* * * * *
61895 TCAAAATG-CCTTTGGGTATACTTTTGACGTG
124 CCAAAATGCCCTTAGGGTATACCTTCGACGTA
** * * * ** * * * *
61926 AAAGTATCCCAATAGCCTTAATGGACATAAAAATGATAAATAAAAGGATGAACCTATCCT-AA-A
1 AAAGTATTTCGATAACCCTAAAAGACACAGAAATGATACATAAAAAGATGAA-CTATCCTAAATA
* *
61989 CACACATTTGGCATAGAAAT
65 CACACCTTTGGCATAAAAAT
62009 GACCTGATGA
Statistics
Matches: 655, Mismatches: 156, Indels: 91
0.73 0.17 0.10
Matches are distributed among these distances:
152 74 0.11
153 190 0.29
154 57 0.09
155 96 0.15
156 93 0.14
157 131 0.20
158 14 0.02
ACGTcount: A:0.41, C:0.19, G:0.15, T:0.25
Consensus pattern (155 bp):
AAAGTATTTCGATAACCCTAAAAGACACAGAAATGATACATAAAAAGATGAACTATCCTAAATAC
ACACCTTTGGCATAAAAATAACCCAATGACTACCTAAGACTCAGTTGTAAAGAAATTACCAAAAT
GCCCTTAGGGTATACCTTCGACGTA
Found at i:61479 original size:310 final size:307
Alignment explanation
Indices: 61057--61715 Score: 684
Period size: 310 Copynumber: 2.1 Consensus size: 307
61047 GAACCTCTTT
* * * * * *
61057 TAAACACATACCTTTGGCATAAAAACAACCTAGTGACTACCTAAAATTCAATTATAAGGAATTAC
1 TAAATACACACCTTTGGCATAAAAACAACCCAATGACTACCTAAAACTCAATTATAAGAAATTAC
* * ** * * *
61122 CAAAATGCCTTTAGGGTATACCTTCGACGTAAAAGTATCTCAATAACCCTAAGGGCAT-GAA-AA
66 CAAAATACCCTTAAAGTACACCTTCGACGTAAAAGTATCTCAATAACCCTAAAGG-ATACAAGAA
* * * * * *
61185 GATAATAAAAGGAT-AAACCTATCCTAGATGCATACCTTTGGCGTAAAAATGACCTGGTGACAAC
130 GATAATAAAAGGATGAAACCTATCCTAAATACACACCTTTGGCATAAAAATGACCCGATGACAAC
* * *** * *
61249 TTAGGACTCGATTCAAGGGAAGGTACCAAAATGCCCCTAAGGCATACATTCGACGTAAAAGTATT
195 CTAAGACT--ATTCAACAAAAAGTACCAAAATACCCCTAAGGCATACATTCGACGTAAAAGTA-T
*** *
61314 TTGATAACCCTAAAAGAGCACAG-AAATGATACATTAAAAAGATGAAC-TATCC
257 CCAATAACCCTAAAAGA-CA-AGAAAATGATA-AATAAAAAGATGAACATATCC
* * *
61366 TAAATACACACCTTTGGCATAAAAACAACCCAATGACTACCTAAGACTCAGTTGTAAAGAAATTA
1 TAAATACACACCTTTGGCATAAAAACAACCCAATGACTACCTAAAACTCAATTAT-AAGAAATTA
* ** *
61431 CCAAAATACCCTTAAAGTGCATTTTCGACGTGAAAGTATC-CGAATAACCCTAAAGGATACAAGA
65 CCAAAATACCCTTAAAGTACACCTTCGACGTAAAAGTATCTC-AATAACCCTAAAGGATACAAGA
* * * * * *
61495 AGATCATAAAATGATGAAACCTATCCTAAATACACACTTTTTGCATAAAAGTGACCCGATGACTA
129 AGATAATAAAAGGATGAAACCTATCCTAAATACACACCTTTGGCATAAAAATGACCCGATGACAA
* * *** * * * *
61560 CCTAAGACTATTCTACAAAAATTACCAAAATACTGTTAGGGTATACCTTCGACGTGAAAGTATCC
194 CCTAAGACTATTCAACAAAAAGTACCAAAATACCCCTAAGGCATACATTCGACGTAAAAGTATCC
*
61625 AATAACCCTAAAAGACATGAAAATGATAAATAAAAAGATGAACATATCC
259 AATAACCCTAAAAGACAAGAAAATGATAAATAAAAAGATGAACATATCC
* *
61674 TAAATGCACACCTTTGGCA-AAAAAGTAACCCAATGACTACCT
1 TAAATACACACCTTTGGCATAAAAA-CAACCCAATGACTACCT
61716 TGGACTTGGT
Statistics
Matches: 287, Mismatches: 55, Indels: 17
0.80 0.15 0.05
Matches are distributed among these distances:
307 20 0.07
308 49 0.17
309 65 0.23
310 93 0.32
311 14 0.05
312 46 0.16
ACGTcount: A:0.42, C:0.20, G:0.14, T:0.24
Consensus pattern (307 bp):
TAAATACACACCTTTGGCATAAAAACAACCCAATGACTACCTAAAACTCAATTATAAGAAATTAC
CAAAATACCCTTAAAGTACACCTTCGACGTAAAAGTATCTCAATAACCCTAAAGGATACAAGAAG
ATAATAAAAGGATGAAACCTATCCTAAATACACACCTTTGGCATAAAAATGACCCGATGACAACC
TAAGACTATTCAACAAAAAGTACCAAAATACCCCTAAGGCATACATTCGACGTAAAAGTATCCAA
TAACCCTAAAAGACAAGAAAATGATAAATAAAAAGATGAACATATCC
Found at i:61969 original size:156 final size:154
Alignment explanation
Indices: 61116--62031 Score: 610
Period size: 153 Copynumber: 5.9 Consensus size: 154
61106 AATTATAAGG
* * * * *
61116 AATTACCAAAATGCCTTTAGGGTATACCTTCGACGTAAAAGTATCTCAATAACCCT-AAGGGCAT
1 AATTATCAAAATGCCTTT-GGGTATACTTTCGACGTGAAAGTATCCCAATAACCCTAAAGGACAT
* * * * * * *
61180 GAAAA-GATAATAAAAGGATAAACCTATCCTAGATGCATACCTTTGGCGTAAAAA-TGACCTGGT
65 AAAAATGATAATAAAAGGATGAACCTATCCTAAATGCACACCTTTGGCATAAAAAGTGACCCGAT
* * * *
61243 GACAACTTAGGACTCGATTCAAGGGA
130 GACTACCTAGGACTTGATTCTA-GGA
** * * ** * * * **** *
61269 AGGTACCAAAATGCCCCTAAGGCATACATTCGACGTAAAAGTATTTTGATAACCCTAAAAGAGCA
1 AATTATCAAAATG-CCTTTGGGTATACTTTCGACGTGAAAGTATCCCAATAACCCTAAAGGA-CA
* * * * **
61334 CAGAAATGATACATTAAAAAGATGAA-CTATCCTAAATACACACCTTTGGCATAAAAA-CAACCC
64 TAAAAATGATA-A-TAAAAGGATGAACCTATCCTAAATGCACACCTTTGGCATAAAAAGTGACCC
* * * * *
61397 AATGACTACCTAAGAC-TCAGTTGTAAAGA
127 GATGACTACCTAGGACTTGA-TTCT-AGGA
* * *** ** * * * *
61426 AATTACCAAAATACCCTTAAAGTGCATTTTCGACGTGAAAGTATCCGAATAACCCTAAAGGATAC
1 AATTATCAAAAT-GCCTTTGGGTATACTTTCGACGTGAAAGTATCCCAATAACCCTAAAGGACAT
* * * * * *
61491 AAGAA-GATCATAAAATGATGAAACCTATCCTAAATACACACTTTTTGCAT-AAAAGTGACCCGA
65 AAAAATGATAATAAAAGGATG-AACCTATCCTAAATGCACACCTTTGGCATAAAAAGTGACCCGA
* **
61554 TGACTACCTAAGAC-T-ATTCTACAAA
129 TGACTACCTAGGACTTGATTCTA-GGA
* * * *
61579 AATTACCAAAAT-ACTGTTAGGGTATACCTTCGACGTGAAAGTAT-CCAATAACCCTAAAAGACA
1 AATTATCAAAATGCCT-TT-GGGTATACTTTCGACGTGAAAGTATCCCAATAACCCTAAAGGACA
* * * * *
61642 TGAAAATGATAAATAAAAAGATGAACATATCCTAAATGCACACCTTTGGCA-AAAAAGTAACCCA
64 TAAAAATGAT-AATAAAAGGATGAACCTATCCTAAATGCACACCTTTGGCATAAAAAGTGACCCG
* * *
61706 ATGACTACCTTGGACTTGGTTGTAGGGA
128 ATGACTACCTAGGACTTGATTCTA-GGA
* * * * ***** * * *
61734 AATTATCCAAATATGCCCCTAGGGTGTACTTTCGA-GTGAAAATATATTGGTAACCATATAGAAC
1 AATTAT-CAAA-ATG-CCTTTGGGTATACTTTCGACGTGAAAGTATCCCAATAACCCTAAAGGAC
* * * * *
61798 ATGAAAATG-TCATAAAAGGATGAAACTTATCCCAAATGCACACCTTTGGCATAAAAAG-GACTC
63 ATAAAAATGATAATAAAAGGATG-AACCTATCCTAAATGCACACCTTTGGCATAAAAAGTGACCC
*
61861 GATGACTATCTAGGACTTGATTCTAGGA
127 GATGACTACCTAGGACTTGATTCTAGGA
* * * *
61889 ATATTATCAAAATGCCTTTGGGTATACTTTTGACGTGAAAGTATCCCAATAGCCTTAATGGACAT
1 A-ATTATCAAAATGCCTTTGGGTATACTTTCGACGTGAAAGTATCCCAATAACCCTAAAGGACAT
* * *
61954 AAAAATGATAAATAAAAGGATGAACCTATCCTAAA--CACACATTTGGCATAGAAA-TGACCTGA
65 AAAAATGAT-AATAAAAGGATGAACCTATCCTAAATGCACACCTTTGGCATAAAAAGTGACCCGA
* *
62016 TGACTAGCTCGGACTT
129 TGACTACCTAGGACTT
62032 AATTTTTTAA
Statistics
Matches: 589, Mismatches: 142, Indels: 64
0.74 0.18 0.08
Matches are distributed among these distances:
151 2 0.00
152 21 0.04
153 188 0.32
154 54 0.09
155 92 0.16
156 89 0.15
157 130 0.22
158 12 0.02
159 1 0.00
ACGTcount: A:0.40, C:0.19, G:0.16, T:0.25
Consensus pattern (154 bp):
AATTATCAAAATGCCTTTGGGTATACTTTCGACGTGAAAGTATCCCAATAACCCTAAAGGACATA
AAAATGATAATAAAAGGATGAACCTATCCTAAATGCACACCTTTGGCATAAAAAGTGACCCGATG
ACTACCTAGGACTTGATTCTAGGA
Found at i:70783 original size:13 final size:13
Alignment explanation
Indices: 70765--70789 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70755 CATAAAGTGT
70765 TGTATCGATACAA
1 TGTATCGATACAA
70778 TGTATCGATACA
1 TGTATCGATACA
70790 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:70787 original size:33 final size:33
Alignment explanation
Indices: 70745--70811 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
70735 TTCAACGATT
70745 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
*** *
70778 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
70811 T
1 T
70812 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAGTGTTGTATCGATACAA
Found at i:70870 original size:13 final size:13
Alignment explanation
Indices: 70852--70876 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70842 ATCACTTAAA
70852 TGTATCGATACAT
1 TGTATCGATACAT
70865 TGTATCGATACA
1 TGTATCGATACA
70877 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:70941 original size:52 final size:52
Alignment explanation
Indices: 70885--71013 Score: 222
Period size: 52 Copynumber: 2.5 Consensus size: 52
70875 CACTGATCTT
*
70885 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
**
70937 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTCAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
70989 TGTATCGATACATTCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
71014 TCATATTTTG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 73 1.00
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:78958 original size:29 final size:29
Alignment explanation
Indices: 78926--79012 Score: 74
Period size: 29 Copynumber: 3.0 Consensus size: 29
78916 TTCCATATTC
78926 TAGGACTATTTATGTAATTTCATGCATTT
1 TAGGACTATTTATGTAATTTCATGCATTT
* * *
78955 TAGG-GTCATTTCA-ATAATTTGCCATG-TTTT
1 TAGGACT-ATTT-ATGTAATTT--CATGCATTT
*
78985 TA-GACTATTTATGTAATTTCATACATTT
1 TAGGACTATTTATGTAATTTCATGCATTT
79013 ATGCATCATT
Statistics
Matches: 44, Mismatches: 7, Indels: 15
0.67 0.11 0.23
Matches are distributed among these distances:
27 3 0.07
28 5 0.11
29 25 0.57
30 7 0.16
31 4 0.09
ACGTcount: A:0.28, C:0.11, G:0.13, T:0.48
Consensus pattern (29 bp):
TAGGACTATTTATGTAATTTCATGCATTT
Found at i:78973 original size:58 final size:58
Alignment explanation
Indices: 78897--79012 Score: 153
Period size: 58 Copynumber: 2.0 Consensus size: 58
78887 TAATGCAATC
* * * * *
78897 TAGGTTCATTTTAGTAATTTTCCAT-ATTCTAGGACTATTTATGTAATTTCATGCATTT
1 TAGGGTCATTTCAATAATTTGCCATGATTCTA-GACTATTTATGTAATTTCATACATTT
* *
78955 TAGGGTCATTTCAATAATTTGCCATGTTTTTAGACTATTTATGTAATTTCATACATTT
1 TAGGGTCATTTCAATAATTTGCCATGATTCTAGACTATTTATGTAATTTCATACATTT
79013 ATGCATCATT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
58 46 0.92
59 4 0.08
ACGTcount: A:0.27, C:0.12, G:0.12, T:0.49
Consensus pattern (58 bp):
TAGGGTCATTTCAATAATTTGCCATGATTCTAGACTATTTATGTAATTTCATACATTT
Found at i:79147 original size:57 final size:57
Alignment explanation
Indices: 79086--79273 Score: 153
Period size: 58 Copynumber: 3.3 Consensus size: 57
79076 AGTAATTTAC
*
79086 CATGATCTAGGACTTCAATGTAATTTTGTGAATTTTAATGCCATTTAGGTCATTTTT
1 CATGATCTAGGACTTCAATGTAATTTTGTGAATTTTGATGCCATTTAGGTCATTTTT
* * * * ** * * * ** **
79143 CATGATCTAGAAACTTTAATGTCATGTCATGCATTTTGATGTCGTTTACATCATTACT
1 CATGATCTAG-GACTTCAATGTAATTTTGTGAATTTTGATGCCATTTAGGTCATTTTT
** * * * * *
79201 -ATGATCTAGGGACTTGGATGCAATTATGTGAATTTTGATACTACTTAGGTCATTTTT
1 CATGATCTA-GGACTTCAATGTAATTTTGTGAATTTTGATGCCATTTAGGTCATTTTT
79258 CATGATCTAAGGACTT
1 CATGATCT-AGGACTT
79274 TTAAATCATT
Statistics
Matches: 94, Mismatches: 33, Indels: 7
0.70 0.25 0.05
Matches are distributed among these distances:
57 46 0.49
58 47 0.50
59 1 0.01
ACGTcount: A:0.27, C:0.14, G:0.17, T:0.42
Consensus pattern (57 bp):
CATGATCTAGGACTTCAATGTAATTTTGTGAATTTTGATGCCATTTAGGTCATTTTT
Found at i:80549 original size:15 final size:16
Alignment explanation
Indices: 80513--80554 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
80503 TTTAATATTT
*
80513 ATAAAATTGTTAATTAA
1 ATAAAATT-ATAATTAA
80530 ATAAAATTATAATT-A
1 ATAAAATTATAATTAA
*
80545 ATAAATTTAT
1 ATAAAATTAT
80555 TTAAAAATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 10 0.43
16 5 0.22
17 8 0.35
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (16 bp):
ATAAAATTATAATTAA
Found at i:81926 original size:475 final size:475
Alignment explanation
Indices: 81289--82164 Score: 1209
Period size: 475 Copynumber: 1.8 Consensus size: 475
81279 TATAAATTGA
* *
81289 ATCACGGTGATTAGCTATGCAAAATATAACATGAATTGAGATACAATACAAACTCAACATATATA
1 ATCACAGTGATTAGCAATGCAAAATATAACATGAATTGAGATACAATACAAACTCAACATATATA
*
81354 TAAAAAATTAAAACACAACATGAAAAATAATATAAATACGGTACGAATATACGAATATGTCAAAA
66 TAAAAAATTAAAACACAACATGAAAAATAATATAAATACGGTACGAATACACGAATATGTCAAAA
* * * *
81419 TATAGATAAATGAATAATTAACATGTAAAAA-TT-TAT-TTTA-TTTTAA-ACATAAAAAA-AAT
131 TATAAATAAATAAATAATTAACATGAAAAAATTTATATATTTATTTTTAAGACATAAAAAATAAC
*
81478 ATAAATATGATGTTTATAAAAAAATATTTAAAATATAACATGAAAATGATATGCATATAACACGA
196 ATAAATATGATGTTTAT-AAAAAATATTTAAAACATAACATGAAAATGATATGCATATAACACGA
* *
81543 ATATACGTACATATAAAAATATACATAAAATAAAACGAATTATTAATATGTAAAAAATACAAAAA
260 ATACACGTACATATAAAAATATACATAAAATAAAACAAATTATTAATA--T-----AT--AAAAA
*
81608 TATAATATTTTAAATA-AAAAAAT-AT-AAATACAAACAT-ATAAATTTTTTTCTCTTTT-TTTT
316 TATAATATTTTAAATATAAAAAATAATAAAATACAAA-ATCATAAATTTATTTCTCTTTTCTTTT
81668 CTTTCATTTTCTTTTTTTCTAGCTTTGCCTTGCTGAACGCAAAAAAAAAATGTCACGTGTCAGCA
380 CTTT-ATTTTCTTTTTTTCTAGCTTTGCCTTGCTGAACGCAAAAAAAAAATGTCACGTGTCAGCA
81733 TCATGTGAGTTTGTGCAGTTTATTTTATATGC
444 TCATGTGAGTTTGTGCAGTTTATTTTATATGC
* * * * *
81765 ATCACAGTGATTAGCAATGTAAAATATAACATGAATTGAGATATAATATAAATTCAATATATATA
1 ATCACAGTGATTAGCAATGCAAAATATAACATGAATTGAGATACAATACAAACTCAACATATATA
* * * ** *
81830 -AAAAAATTAAAACATAGCATGAAAAATAATGTAAATATTGTATGAATACACGAATATGTCAAAA
66 TAAAAAATTAAAACACAACATGAAAAATAATATAAATACGGTACGAATACACGAATATGTCAAAA
*
81894 TATAAATAAATAAATAATTAACGTGAAAAAATTTATATAAATTTATTTTTTTAAGACATAAAAAA
131 TATAAATAAATAAATAATTAACATGAAAAAATTTATAT--ATTTA--TTTTTAAGACATAAAAAA
* * * *
81959 TAACATAAATATGATGTTTATAAAAAATATTTAAAACATAGCTTGAAAATGATATGTATATAATA
192 TAACATAAATATGATGTTTATAAAAAATATTTAAAACATAACATGAAAATGATATGCATATAACA
* * * *
82024 CGAATACACGTATATATAATAATATATATAAAATAAAATAAATTATTAATATATAAAAATATAAT
257 CGAATACACGTACATATAAAAATATACATAAAATAAAACAAATTATTAATATATAAAAATATAAT
* * *
82089 ATTTTAAATATAAAAAATAATAAAAATACGAATTCATAAATTTATTTCTCTTTTCTTTTCTTTTT
322 ATTTTAAATATAAAAAATAAT-AAAATACAAAATCATAAATTTATTTCTCTTTTCTTTTCTTTAT
82154 TTTCTTTTTTT
386 TTTCTTTTTTT
82165 TTTCTTCCAA
Statistics
Matches: 350, Mismatches: 34, Indels: 29
0.85 0.08 0.07
Matches are distributed among these distances:
475 105 0.30
476 67 0.19
477 7 0.02
478 1 0.00
479 38 0.11
480 12 0.03
482 1 0.00
483 6 0.02
484 94 0.27
485 19 0.05
ACGTcount: A:0.49, C:0.08, G:0.08, T:0.35
Consensus pattern (475 bp):
ATCACAGTGATTAGCAATGCAAAATATAACATGAATTGAGATACAATACAAACTCAACATATATA
TAAAAAATTAAAACACAACATGAAAAATAATATAAATACGGTACGAATACACGAATATGTCAAAA
TATAAATAAATAAATAATTAACATGAAAAAATTTATATATTTATTTTTAAGACATAAAAAATAAC
ATAAATATGATGTTTATAAAAAATATTTAAAACATAACATGAAAATGATATGCATATAACACGAA
TACACGTACATATAAAAATATACATAAAATAAAACAAATTATTAATATATAAAAATATAATATTT
TAAATATAAAAAATAATAAAATACAAAATCATAAATTTATTTCTCTTTTCTTTTCTTTATTTTCT
TTTTTTCTAGCTTTGCCTTGCTGAACGCAAAAAAAAAATGTCACGTGTCAGCATCATGTGAGTTT
GTGCAGTTTATTTTATATGC
Found at i:82075 original size:23 final size:22
Alignment explanation
Indices: 82049--82112 Score: 67
Period size: 23 Copynumber: 2.7 Consensus size: 22
82039 ATAATAATAT
82049 ATATAAAATAAAATAAATTATT-A
1 ATATAAAA-AAAATAAATT-TTAA
*
82072 ATATATAAAAATATAATATTTTAA
1 ATATA-AAAAAAATAA-ATTTTAA
82096 ATATAAAAAATAATAAA
1 ATATAAAAAA-AATAAA
82113 AATACGAATT
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
23 19 0.54
24 16 0.46
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (22 bp):
ATATAAAAAAAATAAATTTTAA
Found at i:82084 original size:21 final size:22
Alignment explanation
Indices: 82042--82110 Score: 76
Period size: 21 Copynumber: 3.3 Consensus size: 22
82032 CGTATATATA
82042 ATAATATATATAAA-AT-AAAAT
1 ATAATATAT-TAAATATAAAAAT
82063 A-AAT-TATTAATATATAAAAAT
1 ATAATATATTAA-ATATAAAAAT
*
82084 ATAATATTTTAAATATAAAAA-
1 ATAATATATTAAATATAAAAAT
82105 ATAATA
1 ATAATA
82111 AAAATACGAA
Statistics
Matches: 42, Mismatches: 1, Indels: 10
0.79 0.02 0.19
Matches are distributed among these distances:
18 3 0.07
19 4 0.10
20 5 0.12
21 13 0.31
22 12 0.29
23 5 0.12
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (22 bp):
ATAATATATTAAATATAAAAAT
Found at i:87074 original size:27 final size:28
Alignment explanation
Indices: 87023--87076 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
87013 ATATAATAAA
*
87023 AATTTATTATTTTTATTTAATTTTTAAT
1 AATTTATTATTTTTATTTAAATTTTAAT
87051 AATTTAATT-TTTTTA-TTAAATTTTAA
1 AATTT-ATTATTTTTATTTAAATTTTAA
87077 AATATGAACA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
27 10 0.42
28 11 0.46
29 3 0.12
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (28 bp):
AATTTATTATTTTTATTTAAATTTTAAT
Found at i:91186 original size:13 final size:13
Alignment explanation
Indices: 91168--91192 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
91158 ACATTATGCT
91168 TTGTATCGATACG
1 TTGTATCGATACG
91181 TTGTATCGATAC
1 TTGTATCGATAC
91193 ATGTTCATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.20, T:0.40
Consensus pattern (13 bp):
TTGTATCGATACG
Found at i:91192 original size:33 final size:32
Alignment explanation
Indices: 91150--91211 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 32
91140 CGTTGCGACA
*
91150 GTATCGATACAT-TATGCTTTGTATCGATACGTT
1 GTATCGATACATGT-T-CATTGTATCGATACGTT
91183 GTATCGATACATGTTCATTGTATCGATAC
1 GTATCGATACATGTTCATTGTATCGATAC
91212 ATGCCCAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
32 13 0.48
33 13 0.48
34 1 0.04
ACGTcount: A:0.26, C:0.16, G:0.18, T:0.40
Consensus pattern (32 bp):
GTATCGATACATGTTCATTGTATCGATACGTT
Found at i:91224 original size:20 final size:20
Alignment explanation
Indices: 91181--91254 Score: 123
Period size: 20 Copynumber: 3.8 Consensus size: 20
91171 TATCGATACG
**
91181 TTGTATCGATACATGTTC-A
1 TTGTATCGATACATGCCCAA
91200 TTGTATCGATACATGCCCAA
1 TTGTATCGATACATGCCCAA
91220 TTGTATCGATACATGCCCAA
1 TTGTATCGATACATGCCCAA
91240 TTGTATCGATACATG
1 TTGTATCGATACATG
91255 AAACTGACAG
Statistics
Matches: 52, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
19 16 0.31
20 36 0.69
ACGTcount: A:0.28, C:0.20, G:0.16, T:0.35
Consensus pattern (20 bp):
TTGTATCGATACATGCCCAA
Found at i:91308 original size:20 final size:20
Alignment explanation
Indices: 91283--91336 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
91273 CTACCACTAT
91283 TTGTATTGATACATGA-CACA
1 TTGTATTGATACATGATCA-A
* *
91303 TTGTATCGATACATGATGAA
1 TTGTATTGATACATGATCAA
91323 TTGTATTGATACAT
1 TTGTATTGATACAT
91337 TGCTTCAAAC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
20 29 0.97
21 1 0.03
ACGTcount: A:0.33, C:0.11, G:0.17, T:0.39
Consensus pattern (20 bp):
TTGTATTGATACATGATCAA
Found at i:99929 original size:20 final size:20
Alignment explanation
Indices: 99904--99948 Score: 90
Period size: 20 Copynumber: 2.2 Consensus size: 20
99894 AAATTCCCAA
99904 ATGTATCGATACAAAGATCC
1 ATGTATCGATACAAAGATCC
99924 ATGTATCGATACAAAGATCC
1 ATGTATCGATACAAAGATCC
99944 ATGTA
1 ATGTA
99949 GCAATACATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.40, C:0.18, G:0.16, T:0.27
Consensus pattern (20 bp):
ATGTATCGATACAAAGATCC
Found at i:99955 original size:20 final size:20
Alignment explanation
Indices: 99912--99956 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
99902 AAATGTATCG
* *
99912 ATACAAAGATCCATGTATCG
1 ATACAAAGATCCATGTAGCA
99932 ATACAAAGATCCATGTAGCA
1 ATACAAAGATCCATGTAGCA
99952 ATACA
1 ATACA
99957 TTGAGTAATG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.44, C:0.20, G:0.13, T:0.22
Consensus pattern (20 bp):
ATACAAAGATCCATGTAGCA
Found at i:101004 original size:48 final size:48
Alignment explanation
Indices: 100829--101379 Score: 377
Period size: 48 Copynumber: 11.8 Consensus size: 48
100819 ATGAGAAGAA
* * * *
100829 TGCCAATGTGCTGATTCAAGGCCAACGACATTGGGTTTTAAAGATGACGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATT-GGTCTTAAAGAT---G-AGG
* * *
100882 TGCCAATATGCTGATTCAAGGCCAACGATGTTGGACTTAAAGATGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGATG-AGG
* * * *
100931 TGCTAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGATGAGG
* *
100979 TGCCAATATACTGATTCAAGGCCAGCGATATTGGGCTTAAAGATGGTTGAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGA----TGAGG
* ** * * * *
101031 TGCCGATATGCTGATTCAAGGCCAATGACATCGGTCTTAAAGATAAATG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGAT-GAGG
* *
101080 TTCCAATATGCTGATTCAAGGCCAGCGATACTAGG-CTT---G-T---G
1 TGCCAATATGCTGATTCAAGGCCAGCGATA-TTGGTCTTAAAGATGAGG
* * **
101121 T--CAATATGCTGATTTAAGGCCAGCGACATTGGTCTTAAAGACAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGATGAGG
* * *
101167 TGTCAATATGCTAATTCAAGGCCAGCGATATTGGGC-T-----T-A--
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGATGAGG
* * **
101206 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGATGAGG
* *
101254 TGCCAATATGCTGATTCAAGGCCAACGATATTGGGC-T-----T-A--
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGATGAGG
* * * * **
101293 CGCCAATGTGCTGATTCAAGGCC-GACGACATTGGGCTTAAAGACAAGG
1 TGCCAATATGCTGATTCAAGGCCAG-CGATATTGGTCTTAAAGATGAGG
* * * *
101341 AGCCAATATGCTGATTCAAGGCTAGCAATATTGGGCTTA
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTA
101380 CGCCAATGTG
Statistics
Matches: 402, Mismatches: 60, Indels: 77
0.75 0.11 0.14
Matches are distributed among these distances:
38 3 0.01
39 90 0.22
40 2 0.00
41 4 0.01
42 1 0.00
45 1 0.00
46 5 0.01
47 2 0.00
48 135 0.34
49 77 0.19
50 3 0.01
52 50 0.12
53 29 0.07
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.26
Consensus pattern (48 bp):
TGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGATGAGG
Found at i:101070 original size:52 final size:50
Alignment explanation
Indices: 100829--101109 Score: 273
Period size: 49 Copynumber: 5.6 Consensus size: 50
100819 ATGAGAAGAA
* * ** *
100829 TGCCAATGTGCTGATTCAAGGCCAACGACATTGGGTTTTAAAGATGACGAAGG
1 TGCCAATATGCTGATTCAAGGCCAACGATATT-GGACTTAAAGATG-TG-AGG
* *
100882 TGCCAATATGCTGATTCAAGGCCAACGATGTTGGACTTAAAGATG-AAGG
1 TGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGATGTGAGG
* * * *
100931 TGCTAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAGA--TGACG
1 TGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGATGTGAGG
* * *
100979 TGCCAATATACTGATTCAAGGCCAGCGATATTGGGCTTAAAGATGGTTGAGG
1 TGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGAT-G-TGAGG
* * * * * ** *
101031 TGCCGATATGCTGATTCAAGGCCAATGACATCGGTCTTAAAGAT-AAATG
1 TGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGATGTGAGG
* *
101080 TTCCAATATGCTGATTCAAGGCCAGCGATA
1 TGCCAATATGCTGATTCAAGGCCAACGATA
101110 CTAGGCTTGT
Statistics
Matches: 191, Mismatches: 32, Indels: 14
0.81 0.14 0.06
Matches are distributed among these distances:
48 41 0.21
49 69 0.36
52 52 0.27
53 29 0.15
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (50 bp):
TGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGATGTGAGG
Found at i:101070 original size:149 final size:150
Alignment explanation
Indices: 100829--101292 Score: 390
Period size: 149 Copynumber: 3.3 Consensus size: 150
100819 ATGAGAAGAA
* * *
100829 TGCCAATGTGCTGATTCAAGGCCAACGACATTGGGTTTTAAAGATGACGAAGGTGCCAATATGCT
1 TGCCAATATACTGATTCAAGGCCAACGACATTGGGTCTTAAAGATGACGAAGGTGCCAATATGCT
** * * * *
100894 GATTCAAGGCCAACGATGTTGGACTTAAAGATGAAGGTGCTAATGTGCTGATTCAAGGCCAGCGA
66 GATTCAAGGCCAACGACATCGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGA
100959 TATTGGACTTAAAGATGACG
131 TATTGGACTTAAAGATGACG
* * ** *
100979 TGCCAATATACTGATTCAAGGCCAGCGATATTGGG-CTTAAAGATGGTTG-AGGTGCCGATATGC
1 TGCCAATATACTGATTCAAGGCCAACGACATTGGGTCTTAAAGAT-GACGAAGGTGCCAATATGC
* * * *
101042 TGATTCAAGGCCAATGACATCGGTCTTAAAGATAAATGTTCCAATATGCTGATTCAAGGCCAGCG
65 TGATTCAAGGCCAACGACATCGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCG
*
101107 ATACTAGG-CTT---G-T---G
130 ATA-TTGGACTTAAAGATGACG
* * * *
101121 T--CAATATGCTGATTTAAGGCCAGCGACATT-GGTCTT-AA-A-GAC-AAGGTGTCAATATGCT
1 TGCCAATATACTGATTCAAGGCCAACGACATTGGGTCTTAAAGATGACGAAGGTGCCAATATGCT
* * * * * *
101179 AATTCAAGGCCAGCGATATTGGGC-T-----T--A--TGCCAATGTGCTGATTCAAGGCCAGCGA
66 GATTCAAGGCCAACGACATCGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGA
* * ** *
101234 CATTGGTCTTAAAGACAAGG
131 TATTGGACTTAAAGATGACG
* *
101254 TGCCAATATGCTGATTCAAGGCCAACGATATTGGG-CTTA
1 TGCCAATATACTGATTCAAGGCCAACGACATTGGGTCTTA
101293 CGCCAATGTG
Statistics
Matches: 258, Mismatches: 40, Indels: 46
0.75 0.12 0.13
Matches are distributed among these distances:
125 3 0.01
126 30 0.12
128 1 0.00
129 1 0.00
130 1 0.00
133 2 0.01
135 30 0.12
136 34 0.13
138 1 0.00
139 4 0.02
140 29 0.11
142 2 0.01
145 1 0.00
146 1 0.00
149 82 0.32
150 36 0.14
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.27
Consensus pattern (150 bp):
TGCCAATATACTGATTCAAGGCCAACGACATTGGGTCTTAAAGATGACGAAGGTGCCAATATGCT
GATTCAAGGCCAACGACATCGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGA
TATTGGACTTAAAGATGACG
Found at i:101218 original size:87 final size:87
Alignment explanation
Indices: 101039--101418 Score: 537
Period size: 87 Copynumber: 4.4 Consensus size: 87
101029 GGTGCCGATA
** * * * *
101039 TGCTGATTCAAGGCCAATGACATCGGTCTTAAAGATAAATGTTCCAATATGCTGATTCAAGGCCA
1 TGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGA-CAAGGTGCCAATATGCTGATTCAAGGCCA
* * ** * *
101104 GCGATACTAGGCTTGTGTCAATA
65 GCGATATTGGGCTTACGCCAATG
* * *
101127 TGCTGATTTAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGTCAATATGCTAATTCAAGGCCAG
1 TGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCAAGGCCAG
*
101192 CGATATTGGGCTTATGCCAATG
66 CGATATTGGGCTTACGCCAATG
*
101214 TGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCAAGGCCAA
1 TGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCAAGGCCAG
101279 CGATATTGGGCTTACGCCAATG
66 CGATATTGGGCTTACGCCAATG
* * *
101301 TGCTGATTCAAGGCC-GACGACATTGGGCTTAAAGACAAGGAGCCAATATGCTGATTCAAGGCTA
1 TGCTGATTCAAGGCCAG-CGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCAAGGCCA
*
101365 GCAATATTGGGCTTACGCCAATG
65 GCGATATTGGGCTTACGCCAATG
*
101388 TGCTGATTCAAGGCCAGCGACATTGGGCTTA
1 TGCTGATTCAAGGCCAGCGACATTGGTCTTA
101419 GAAAAAGACG
Statistics
Matches: 266, Mismatches: 24, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
86 1 0.00
87 233 0.88
88 32 0.12
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (87 bp):
TGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATTCAAGGCCAG
CGATATTGGGCTTACGCCAATG
Found at i:101239 original size:39 final size:39
Alignment explanation
Indices: 101170--101418 Score: 212
Period size: 39 Copynumber: 5.9 Consensus size: 39
101160 GACAAGGTGT
* * *
101170 CAATATGCTAATTCAAGGCCAGCGATATTGGGCTTATGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGGCTTACGC
* *
101209 CAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGGCTT----AC-----GC
* *
101257 CAATATGCTGATTCAAGGCCAACGATATTGGGCTTACGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGGCTTACGC
*
101296 CAATGTGCTGATTCAAGGCC-GACGACATTGGGCTTAAAGACAAGGAGC
1 CAATATGCTGATTCAAGGCCAG-CGACATTGGGCTT----AC-----GC
* * *
101344 CAATATGCTGATTCAAGGCTAGCAATATTGGGCTTACGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGGCTTACGC
*
101383 CAATGTGCTGATTCAAGGCCAGCGACATTGGGCTTA
1 CAATATGCTGATTCAAGGCCAGCGACATTGGGCTTA
101419 GAAAAAGACG
Statistics
Matches: 170, Mismatches: 20, Indels: 40
0.74 0.09 0.17
Matches are distributed among these distances:
39 98 0.58
43 3 0.02
44 4 0.02
48 64 0.38
49 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (39 bp):
CAATATGCTGATTCAAGGCCAGCGACATTGGGCTTACGC
Found at i:101522 original size:30 final size:30
Alignment explanation
Indices: 101440--101535 Score: 101
Period size: 30 Copynumber: 3.3 Consensus size: 30
101430 CACCAACTTA
* **
101440 TGTGGGCTTTT-AAAAGGGTTG-CACCAACT
1 TGTGGGCTTTTGAAAATGG-TGCCACTGACT
* **
101469 TGTGTGCTTTTGAAGCT--TGCCACTGACT
1 TGTGGGCTTTTGAAAATGGTGCCACTGACT
101497 TGTGGGCTTTTGAAAATGGTGCCACTGACT
1 TGTGGGCTTTTGAAAATGGTGCCACTGACT
101527 TGTGGGCTT
1 TGTGGGCTT
101536 AAAAGGAGAA
Statistics
Matches: 54, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
27 2 0.04
28 20 0.37
29 10 0.19
30 22 0.41
ACGTcount: A:0.18, C:0.18, G:0.29, T:0.35
Consensus pattern (30 bp):
TGTGGGCTTTTGAAAATGGTGCCACTGACT
Found at i:101570 original size:33 final size:31
Alignment explanation
Indices: 101515--102029 Score: 352
Period size: 33 Copynumber: 16.9 Consensus size: 31
101505 TTTGAAAATG
* * *
101515 GTGCCACTGACTTGTGGGCTTAAAAGGAGAAA
1 GTGCCACGGAGTTGTGGACTTAAAAGG-GAAA
*
101547 GATGCCACGGAGTTGTAGACTTAAAA-GG---
1 G-TGCCACGGAGTTGTGGACTTAAAAGGGAAA
* *
101575 GTGCCACAGAGTTGTGGATTTAAAA-GG---
1 GTGCCACGGAGTTGTGGACTTAAAAGGGAAA
* *
101602 GTGCCACTGAGTTATGGACTT-AAAGGGAAAAAGA
1 GTGCCACGGAGTTGTGGACTTAAAAGGG---AA-A
*
101636 GTGCCACGGAGTTGTGGATTTAAAA-GG---
1 GTGCCACGGAGTTGTGGACTTAAAAGGGAAA
**
101663 GTGCCACTAAGTTGTGGACTT-AAAGGGAAAAAGA
1 GTGCCACGGAGTTGTGGACTTAAAAGGG---AA-A
*
101697 GTGCCACGGAGTTGTGGGCTTAAAA-GG---
1 GTGCCACGGAGTTGTGGACTTAAAAGGGAAA
* * *
101724 GTGCCACAGAGTCGTGGACTTAAAAGGAACAA
1 GTGCCACGGAGTTGTGGACTTAAAAGGGA-AA
101756 GGTGCCACGGAGTTGTGGACTTAAAAGGGAAAA
1 -GTGCCACGGAGTTGTGGACTTAAAAGGG-AAA
* *
101789 GATGCCATGGAATTGTGGACTTAAAA-GG---
1 G-TGCCACGGAGTTGTGGACTTAAAAGGGAAA
* * *
101817 GTGCCACAGAGTTGTGGGCTTTAAA-GG---
1 GTGCCACGGAGTTGTGGACTTAAAAGGGAAA
* ***
101844 GTGCCACGGAGTCGTGGACTTAAAAAAAAAA
1 GTGCCACGGAGTTGTGGACTTAAAAGGGAAA
101875 GGTGCCACGGAGTTGTGGACTTAAAAGGGACAA
1 -GTGCCACGGAGTTGTGGACTTAAAAGGGA-AA
101908 GGTGCCACGGAGTTGTGGACTTAAAAGGGAAAA
1 -GTGCCACGGAGTTGTGGACTTAAAAGGG-AAA
*
101941 GATGCCACGGAGTTGTAGACTTAAAA-GG---
1 G-TGCCACGGAGTTGTGGACTTAAAAGGGAAA
* * *
101969 GTGCCACGGAGTTGTGGGCTTTAAAGGAACAA
1 GTGCCACGGAGTTGTGGACTTAAAAGGGA-AA
* * *
102001 GGGGCCACAGAGTTGTGGGCTTAAAAGGG
1 -GTGCCACGGAGTTGTGGACTTAAAAGGG
102030 TGCCACGGAG
Statistics
Matches: 390, Mismatches: 52, Indels: 81
0.75 0.10 0.15
Matches are distributed among these distances:
26 6 0.02
27 148 0.38
28 5 0.01
31 1 0.00
32 33 0.08
33 149 0.38
34 42 0.11
35 6 0.02
ACGTcount: A:0.32, C:0.14, G:0.34, T:0.21
Consensus pattern (31 bp):
GTGCCACGGAGTTGTGGACTTAAAAGGGAAA
Found at i:101581 original size:27 final size:27
Alignment explanation
Indices: 101549--102046 Score: 314
Period size: 27 Copynumber: 16.6 Consensus size: 27
101539 AGGAGAAAGA
*
101549 TGCCACGGAGTTGTAGACTTAAAAGGG
1 TGCCACGGAGTTGTGGACTTAAAAGGG
* *
101576 TGCCACAGAGTTGTGGATTTAAAAGGG
1 TGCCACGGAGTTGTGGACTTAAAAGGG
* * *
101603 TGCCACTGAGTTATGGACTTAAAGGGAAAAAGAG
1 TGCCACGGAGTTGTGGACTT-------AAAAGGG
*
101637 TGCCACGGAGTTGTGGATTTAAAAGGG
1 TGCCACGGAGTTGTGGACTTAAAAGGG
** *
101664 TGCCACTAAGTTGTGGACTTAAAGGGAAAAAGAG
1 TGCCACGGAGTTGTGGACTT-------AAAAGGG
*
101698 TGCCACGGAGTTGTGGGCTTAAAAGGG
1 TGCCACGGAGTTGTGGACTTAAAAGGG
* *
101725 TGCCACAGAGTCGTGGACTTAAAAGGAACAAGG
1 TGCCACGGAGTTGTGGACTTAAAA-G-----GG
101758 TGCCACGGAGTTGTGGACTTAAAAGGGAAAAG
1 TGCCACGGAGTTGTGGACTTAAAA-GG----G
* *
101790 ATGCCATGGAATTGTGGACTTAAAAGGG
1 -TGCCACGGAGTTGTGGACTTAAAAGGG
* * *
101818 TGCCACAGAGTTGTGGGCTTTAAAGGG
1 TGCCACGGAGTTGTGGACTTAAAAGGG
* *
101845 TGCCACGGAGTCGTGGACTTAAAAAAAAAAGG
1 TGCCACGGAGTTGTGGACTT-----AAAAGGG
101877 TGCCACGGAGTTGTGGACTTAAAAGGGACAAGG
1 TGCCACGGAGTTGTGGACTTAAAA--G----GG
101910 TGCCACGGAGTTGTGGACTTAAAAGGGAAAAG
1 TGCCACGGAGTTGTGGACTTAAAA-GG----G
*
101942 ATGCCACGGAGTTGTAGACTTAAAAGGG
1 -TGCCACGGAGTTGTGGACTTAAAAGGG
*
101970 TGCCACGGAGTTGTGGGCTTTAAAGGAACAAGGG
1 TGCCACGGAGTTGTGGAC-TT-----AA-AAGGG
* *
102004 -GCCACAGAGTTGTGGGCTTAAAAGGG
1 TGCCACGGAGTTGTGGACTTAAAAGGG
*
102030 TGCCACGGAGTCGTGGA
1 TGCCACGGAGTTGTGGA
102047 GTTTGAAGAA
Statistics
Matches: 377, Mismatches: 45, Indels: 98
0.73 0.09 0.19
Matches are distributed among these distances:
26 5 0.01
27 165 0.44
28 7 0.02
32 34 0.09
33 115 0.31
34 51 0.14
ACGTcount: A:0.31, C:0.14, G:0.34, T:0.21
Consensus pattern (27 bp):
TGCCACGGAGTTGTGGACTTAAAAGGG
Found at i:101662 original size:88 final size:87
Alignment explanation
Indices: 101509--101686 Score: 250
Period size: 88 Copynumber: 2.0 Consensus size: 87
101499 TGGGCTTTTG
* * * *
101509 AAAATGGTGCCACTGACTTGTGGGCTTAAAAGGAGAAAGATGCCACGGAGTTGTAGACTTAAAAG
1 AAAAGGGTGCCACTGACTTATGGACTTAAAAGGAAAAAGATGCCACGGAGTTGTAGACTTAAAAG
*
101574 GGTGCCAC-AGAGTTGTGGATTT
66 GGTGCCACTA-AGTTGTGGACTT
* * * *
101596 AAAAGGGTGCCACTGAGTTATGGACTTAAAGGGAAAAAGAGTGCCACGGAGTTGTGGATTTAAAA
1 AAAAGGGTGCCACTGACTTATGGACTTAAAAGGAAAAAGA-TGCCACGGAGTTGTAGACTTAAAA
101661 GGGTGCCACTAAGTTGTGGACTT
65 GGGTGCCACTAAGTTGTGGACTT
101684 AAA
1 AAA
101687 GGGAAAAAGA
Statistics
Matches: 80, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
87 34 0.43
88 45 0.56
89 1 0.01
ACGTcount: A:0.33, C:0.13, G:0.31, T:0.24
Consensus pattern (87 bp):
AAAAGGGTGCCACTGACTTATGGACTTAAAAGGAAAAAGATGCCACGGAGTTGTAGACTTAAAAG
GGTGCCACTAAGTTGTGGACTT
Found at i:101783 original size:60 final size:60
Alignment explanation
Indices: 101569--102082 Score: 502
Period size: 60 Copynumber: 8.4 Consensus size: 60
101559 TTGTAGACTT
* * * * * *
101569 AAAAGGGTGCCACAGAGTTGTGGATTTAAAAGGGTGCCACTGAGTTATGGACTTAAAGGG
1 AAAAAGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGG
* ** *
101629 AAAAAGAGTGCCACGGAGTTGTGGATTTAAAAGGGTGCCACTAAGTTGTGGACTTAAAGGG
1 AAAAAG-GTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGG
* * *
101690 AAAAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGGTGCCACAGAGTCGTGGACTTAAAAGG
1 AAAAAG-GTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGG
* * *
101751 AACAAGGTGCCACGGAGTTGTGGACTTAAAAGGGAAAAGATGCCATGGAATTGTGGACTTAAAA-
1 AAAAAGGTGCCACGGAGTTGTGGACTTAAAA-GG----G-TGCCACGGAGTTGTGGACTTAAAAG
101815 G
60 G
* * * * *
101816 -----GGTGCCACAGAGTTGTGGGCTTTAAAGGGTGCCACGGAGTCGTGGACTTAAAA-A
1 AAAAAGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGG
101870 AAAAAGGTGCCACGGAGTTGTGGACTTAAAAGGGACAAGGTGCCACGGAGTTGTGGACTTAAAAG
1 AAAAAGGTGCCACGGAGTTGTGGACTTAAAA--G----GGTGCCACGGAGTTGTGGACTTAAAAG
101935 G
60 G
* * * * *
101936 GAAAAGATGCCACGGAGTTGTAGACTTAAAAGGGTGCCACGGAGTTGTGGGCTTTAAAGG
1 AAAAAGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGG
* * * * * * ** *
101996 AACAAGGGGCCACAGAGTTGTGGGCTTAAAAGGGTGCCACGGAGTCGTGGAGTTTGAAGA
1 AAAAAGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGG
* * * *
102056 AAAAAGATGGCACTGAGTCGTGGACTT
1 AAAAAGGTGCCACGGAGTTGTGGACTT
102083 TGAAGAAAAA
Statistics
Matches: 383, Mismatches: 52, Indels: 38
0.81 0.11 0.08
Matches are distributed among these distances:
54 21 0.05
55 1 0.00
59 25 0.07
60 146 0.38
61 114 0.30
64 1 0.00
65 27 0.07
66 48 0.13
ACGTcount: A:0.32, C:0.14, G:0.34, T:0.21
Consensus pattern (60 bp):
AAAAAGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGG
Found at i:101918 original size:152 final size:148
Alignment explanation
Indices: 101549--102142 Score: 524
Period size: 152 Copynumber: 3.9 Consensus size: 148
101539 AGGAGAAAGA
* * * * *
101549 TGCCACGGAGTTGTAGACTTAAAAGGGTGCCACAGAGTTGTGGATTTAAAA-G-----GGTGCCA
1 TGCCACGGAGTCGTGGACTTAAAAAGGTGCCACAGAGTCGTGGACTTAAAAGGAACAAGGTGCCA
* * *
101608 CTGAGTTATGGACTT-AAAGGGAAAAAGAGTGCCACGGAGTTGTGGATTTAAAAGGGTGCCACTA
66 CGGAGTTGTGGACTTAAAAGGG-AAAAGA-TGCCACGGAGTTGTGGACTTAAAAGGGTGCCAC-A
*
101672 -AGTTGTGGAC-TTAAAGGGAAAAAGAG
128 GAGTTGTGGGCTTTAAA--G-----GAG
* * *
101698 TGCCACGGAGTTGTGGGCTTAAAAGGGTGCCACAGAGTCGTGGACTTAAAAGGAACAAGGTGCCA
1 TGCCACGGAGTCGTGGACTTAAAAAGGTGCCACAGAGTCGTGGACTTAAAAGGAACAAGGTGCCA
* *
101763 CGGAGTTGTGGACTTAAAAGGGAAAAGATGCCATGGAATTGTGGACTTAAAAGGGTGCCACAGAG
66 CGGAGTTGTGGACTTAAAAGGGAAAAGATGCCACGGAGTTGTGGACTTAAAAGGGTGCCACAGAG
101828 TTGTGGGCTTTAAAGG-G
131 TTGTGGGCTTTAAAGGAG
* * *
101845 TGCCACGGAGTCGTGGACTTAAAAAAAAAAGGTGCCACGGAGTTGTGGACTTAAAAGGGACAAGG
1 TGCCACGGAGTCGTGGACTT-----AAAAAGGTGCCACAGAGTCGTGGACTTAAAAGGAACAAGG
*
101910 TGCCACGGAGTTGTGGACTTAAAAGGGAAAAGATGCCACGGAGTTGTAGACTTAAAAGGGTGCCA
61 TGCCACGGAGTTGTGGACTTAAAAGGGAAAAGATGCCACGGAGTTGTGGACTTAAAAGGGTGCCA
*
101975 CGGAGTTGTGGGCTTTAAAGGAACAAGG
126 CAGAGTTGTGGGCTTTAAAGG----A-G
* * * * * * * ** * * * *
102003 GGCCACAGAGTTGTGGGCTTAAAAGGGTGCCACGGAGTCGTGGAGTTTGAAGAAAAAAGATGGCA
1 TGCCACGGAGTCGTGGACTTAAAAAGGTGCCACAGAGTCGTGGACTTAAAAGGAACAAGGTGCCA
* * ** ** * * *
102068 CTGAGTCGTGGACTTTGAAGAAAAAAGATGCCACTGAGTCGTGGACTTTGGAAAAGAGATGCCAC
66 CGGAGTTGTGGACTTAAAAGGGAAAAGATGCCACGGAGTTGTGGAC-TT--AAAAG-GGTGCCAC
*
102133 TGAGTTGTGG
127 AGAGTTGTGG
102143 ATTTTGAAGA
Statistics
Matches: 376, Mismatches: 45, Indels: 40
0.82 0.10 0.09
Matches are distributed among these distances:
147 19 0.05
148 1 0.00
149 47 0.12
150 1 0.00
152 118 0.31
153 74 0.20
154 41 0.11
155 31 0.08
156 11 0.03
157 16 0.04
158 17 0.05
ACGTcount: A:0.31, C:0.14, G:0.34, T:0.21
Consensus pattern (148 bp):
TGCCACGGAGTCGTGGACTTAAAAAGGTGCCACAGAGTCGTGGACTTAAAAGGAACAAGGTGCCA
CGGAGTTGTGGACTTAAAAGGGAAAAGATGCCACGGAGTTGTGGACTTAAAAGGGTGCCACAGAG
TTGTGGGCTTTAAAGGAG
Found at i:102211 original size:32 final size:32
Alignment explanation
Indices: 102030--102273 Score: 316
Period size: 32 Copynumber: 7.6 Consensus size: 32
102020 CTTAAAAGGG
* *
102030 TGCCACGGAGTCGTGGAGTTTGAAGAAAAAAGA
1 TGCCACTGAGTCGTGGACTTTGAAG-AAAAAGA
*
102063 TGGCACTGAGTCGTGGACTTTGAAGAAAAAAGA
1 TGCCACTGAGTCGTGGACTTTGAAG-AAAAAGA
102096 TGCCACTGAGTCGTGGACTTTG--GAAAAGAGA
1 TGCCACTGAGTCGTGGACTTTGAAGAAAA-AGA
* *
102127 TGCCACTGAGTTGTGGATTTTGAAGAAAAAGA
1 TGCCACTGAGTCGTGGACTTTGAAGAAAAAGA
*
102159 TGCCACTAAGTCGTGGACTTTGAAGAAAAAGA
1 TGCCACTGAGTCGTGGACTTTGAAGAAAAAGA
*
102191 TCCCACTGAGTCGTGGACTTTG--GAAAAGAGA
1 TGCCACTGAGTCGTGGACTTTGAAGAAAA-AGA
* **
102222 TGCCACTGAGTTGTGGGTTTTGAAGAAAAAGA
1 TGCCACTGAGTCGTGGACTTTGAAGAAAAAGA
* *
102254 TGCCATTAAGTCGTGGACTT
1 TGCCACTGAGTCGTGGACTT
102274 AGAAAAGAGA
Statistics
Matches: 185, Mismatches: 20, Indels: 13
0.85 0.09 0.06
Matches are distributed among these distances:
30 9 0.05
31 45 0.24
32 70 0.38
33 61 0.33
ACGTcount: A:0.32, C:0.14, G:0.30, T:0.24
Consensus pattern (32 bp):
TGCCACTGAGTCGTGGACTTTGAAGAAAAAGA
Found at i:102219 original size:95 final size:96
Alignment explanation
Indices: 102030--102273 Score: 400
Period size: 95 Copynumber: 2.5 Consensus size: 96
102020 CTTAAAAGGG
* * * * *
102030 TGCCACGGAGTCGTGGAGTTTGAAGAAAAAAGATGGCACTGAGTCGTGGACTTTGAAGAAAAAAG
1 TGCCACTGAGTTGTGGATTTTGAAG-AAAAAGATGCCACTAAGTCGTGGACTTTGAAGAAAAAAG
*
102095 ATGCCACTGAGTCGTGGACTTTGGAAAAGAGA
65 ATCCCACTGAGTCGTGGACTTTGGAAAAGAGA
102127 TGCCACTGAGTTGTGGATTTTGAAGAAAAAGATGCCACTAAGTCGTGGACTTTGAAG-AAAAAGA
1 TGCCACTGAGTTGTGGATTTTGAAGAAAAAGATGCCACTAAGTCGTGGACTTTGAAGAAAAAAGA
102191 TCCCACTGAGTCGTGGACTTTGGAAAAGAGA
66 TCCCACTGAGTCGTGGACTTTGGAAAAGAGA
* *
102222 TGCCACTGAGTTGTGGGTTTTGAAGAAAAAGATGCCATTAAGTCGTGGACTT
1 TGCCACTGAGTTGTGGATTTTGAAGAAAAAGATGCCACTAAGTCGTGGACTT
102274 AGAAAAGAGA
Statistics
Matches: 139, Mismatches: 8, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
95 87 0.63
96 30 0.22
97 22 0.16
ACGTcount: A:0.32, C:0.14, G:0.30, T:0.24
Consensus pattern (96 bp):
TGCCACTGAGTTGTGGATTTTGAAGAAAAAGATGCCACTAAGTCGTGGACTTTGAAGAAAAAAGA
TCCCACTGAGTCGTGGACTTTGGAAAAGAGA
Found at i:102223 original size:63 final size:64
Alignment explanation
Indices: 102030--102283 Score: 313
Period size: 63 Copynumber: 4.0 Consensus size: 64
102020 CTTAAAAGGG
* * * *
102030 TGCCACGGAGTCGTGGAGTTTGAAGAAAAAAGATGGCACTGAGTCGTGGACTTTGAAGAAAAAAG
1 TGCCACTGAGTCGTGGACTTTGAAG-AAAAAGATGCCACTGAGTCGTGGACTTTG-AGAAAAGAG
102095 A
64 A
* *
102096 TGCCACTGAGTCGTGGACTTTG--GAAAAGAGATGCCACTGAGTTGTGGATTTTGAAGAAAA-AG
1 TGCCACTGAGTCGTGGACTTTGAAGAAAA-AGATGCCACTGAGTCGTGGACTTTG-AGAAAAGAG
102158 A
64 A
* *
102159 TGCCACTAAGTCGTGGACTTTGAAGAAAAAGATCCCACTGAGTCGTGGACTTTG-GAAAAGAGA
1 TGCCACTGAGTCGTGGACTTTGAAGAAAAAGATGCCACTGAGTCGTGGACTTTGAGAAAAGAGA
* ** * *
102222 TGCCACTGAGTTGTGGGTTTTGAAGAAAAAGATGCCATTAAGTCGTGGAC-TT-AGAAAAGAGA
1 TGCCACTGAGTCGTGGACTTTGAAGAAAAAGATGCCACTGAGTCGTGGACTTTGAGAAAAGAGA
102284 GATTTGAAGA
Statistics
Matches: 167, Mismatches: 16, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
62 16 0.10
63 74 0.44
64 52 0.31
65 5 0.03
66 20 0.12
ACGTcount: A:0.34, C:0.13, G:0.30, T:0.23
Consensus pattern (64 bp):
TGCCACTGAGTCGTGGACTTTGAAGAAAAAGATGCCACTGAGTCGTGGACTTTGAGAAAAGAGA
Found at i:103598 original size:11 final size:9
Alignment explanation
Indices: 103593--103649 Score: 55
Period size: 9 Copynumber: 6.1 Consensus size: 9
103583 TTTTTTTGTG
103593 TGTTTTTTT
1 TGTTTTTTT
103602 TGTTTTTATT
1 TGTTTTT-TT
103612 T-TTTTGTTT
1 TGTTTT-TTT
*
103621 T-TTTCTTGT
1 TGTTT-TTTT
103630 TGTTTTTTT
1 TGTTTTTTT
103639 TGTTTGTTTT
1 TGTTT-TTTT
103649 T
1 T
103650 TCTTTCTTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
9 28 0.68
10 13 0.32
ACGTcount: A:0.02, C:0.02, G:0.12, T:0.84
Consensus pattern (9 bp):
TGTTTTTTT
Found at i:103600 original size:13 final size:12
Alignment explanation
Indices: 103582--103650 Score: 79
Period size: 13 Copynumber: 5.5 Consensus size: 12
103572 TCTTTTCCTC
103582 TTTTTTTTGTGTG
1 TTTTTTTTGT-TG
103595 TTTTTTTTGTT-
1 TTTTTTTTGTTG
103606 TTTATTTTT-TTG
1 TTT-TTTTTGTTG
103618 TTTTTTTCTTGTTG
1 -TTTTTT-TTGTTG
103632 TTTTTTTTGTTTG
1 TTTTTTTTG-TTG
103645 TTTTTT
1 TTTTTT
103651 CTTTCTTTTC
Statistics
Matches: 50, Mismatches: 0, Indels: 12
0.81 0.00 0.19
Matches are distributed among these distances:
11 5 0.10
12 12 0.24
13 30 0.60
14 3 0.06
ACGTcount: A:0.01, C:0.01, G:0.13, T:0.84
Consensus pattern (12 bp):
TTTTTTTTGTTG
Found at i:103618 original size:27 final size:24
Alignment explanation
Indices: 103582--103650 Score: 79
Period size: 25 Copynumber: 2.8 Consensus size: 24
103572 TCTTTTCCTC
103582 TTTTTTTTGTGTGTTTTTTTTGTT-
1 TTTTTTTTGT-TGTTTTTTTTGTTG
103606 TTTATTTTT-TTGTTTTTTTCTTGTTG
1 TTT-TTTTTGTTG-TTTTTT-TTGTTG
103632 TTTTTTTTGTTTGTTTTTT
1 TTTTTTTTG-TTGTTTTTT
103651 CTTTCTTTTC
Statistics
Matches: 39, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
23 2 0.05
24 10 0.26
25 15 0.38
26 9 0.23
27 3 0.08
ACGTcount: A:0.01, C:0.01, G:0.13, T:0.84
Consensus pattern (24 bp):
TTTTTTTTGTTGTTTTTTTTGTTG
Found at i:103623 original size:35 final size:36
Alignment explanation
Indices: 103583--103683 Score: 109
Period size: 37 Copynumber: 2.8 Consensus size: 36
103573 CTTTTCCTCT
* *
103583 TTTTTTTGTGTGTTTTTTTTGTTTTTATTTT-TTTG
1 TTTTTTTCTGTGTTTTTTTTGTTTTTATTTTCTTTC
103618 TTTTTTTCTTGTTGTTTTTTTTGTTTGTT-TTTTCTTTC
1 TTTTTTTC-TG-TGTTTTTTTTGTTT-TTATTTTCTTTC
*
103656 TTTTCTTTCTCT-TTTTTTTGTGTTTTTA
1 TTTT-TTTCTGTGTTTTTTT-TGTTTTTA
103684 CTTGTGACTT
Statistics
Matches: 56, Mismatches: 3, Indels: 12
0.79 0.04 0.17
Matches are distributed among these distances:
35 7 0.12
36 11 0.20
37 24 0.43
38 10 0.18
39 4 0.07
ACGTcount: A:0.02, C:0.06, G:0.11, T:0.81
Consensus pattern (36 bp):
TTTTTTTCTGTGTTTTTTTTGTTTTTATTTTCTTTC
Found at i:103659 original size:23 final size:21
Alignment explanation
Indices: 103580--103674 Score: 73
Period size: 23 Copynumber: 4.0 Consensus size: 21
103570 TCTCTTTTCC
103580 TCTTTTTTTTGTGTGTTTTTTTT
1 TCTTTTTTTT-T-TGTTTTTTTT
*
103603 GTTTTTATTTTTTTGTTTTTTTCT
1 -TCTTT-TTTTTTTGTTTTTTT-T
*
103627 TGTTGTTTTTTTTGTTTGTTTTT
1 TCTT-TTTTTTTTGTTT-TTTTT
*
103650 TCTTTCTTTTCTTTCTCTTTTTTT
1 TCTTT-TTTT-TTTGT-TTTTTTT
103674 T
1 T
103675 GTGTTTTTAC
Statistics
Matches: 60, Mismatches: 4, Indels: 14
0.77 0.05 0.18
Matches are distributed among these distances:
22 1 0.02
23 31 0.52
24 21 0.35
25 7 0.12
ACGTcount: A:0.01, C:0.07, G:0.09, T:0.82
Consensus pattern (21 bp):
TCTTTTTTTTTTGTTTTTTTT
Found at i:103673 original size:37 final size:36
Alignment explanation
Indices: 103580--103680 Score: 75
Period size: 38 Copynumber: 2.7 Consensus size: 36
103570 TCTCTTTTCC
* *
103580 TCTTTTTTT-TGTGTGTTTTTTT-TGTTTTTATTTTTT
1 TCTTTTTTTCT-TGTTTTTTTTTGT-TTGTTATTTTTT
*
103616 TGTTTTTTTCTTGTTGTTTTTTTTGTTTGTT-TTTTCTT
1 TCTTTTTTTCTTG-T-TTTTTTTTGTTTGTTATTTT-TT
*
103654 TCTTTTCTTTCTCT-TTTTTTTGTGTTT
1 TCTTTT-TTTCT-TGTTTTTTTTTGTTT
103681 TTACTTGTGA
Statistics
Matches: 53, Mismatches: 5, Indels: 13
0.75 0.07 0.18
Matches are distributed among these distances:
36 10 0.19
37 17 0.32
38 19 0.36
39 6 0.11
40 1 0.02
ACGTcount: A:0.01, C:0.07, G:0.11, T:0.81
Consensus pattern (36 bp):
TCTTTTTTTCTTGTTTTTTTTTGTTTGTTATTTTTT
Found at i:103681 original size:11 final size:11
Alignment explanation
Indices: 103583--103682 Score: 67
Period size: 11 Copynumber: 8.5 Consensus size: 11
103573 CTTTTCCTCT
103583 TTTTTTTGTGTG
1 TTTTTTT-TGTG
*
103595 TTTTTTTTGTT
1 TTTTTTTTGTG
*
103606 TTTATTTTTTTG
1 TTT-TTTTTGTG
103618 TTTTTTTCTTGTTG
1 -TTTTTT-TTG-TG
103632 TTTTTTTTGTTTG
1 TTTTTTTTG--TG
*
103645 TTTTTTCTT-TC
1 TTTTTT-TTGTG
* * *
103656 TTTTCTTTCTC
1 TTTTTTTTGTG
103667 TTTTTTTTGTG
1 TTTTTTTTGTG
103678 TTTTT
1 TTTTT
103683 ACTTGTGACT
Statistics
Matches: 72, Mismatches: 9, Indels: 15
0.75 0.09 0.16
Matches are distributed among these distances:
10 2 0.03
11 27 0.38
12 19 0.26
13 20 0.28
14 4 0.06
ACGTcount: A:0.01, C:0.06, G:0.11, T:0.82
Consensus pattern (11 bp):
TTTTTTTTGTG
Found at i:106363 original size:20 final size:20
Alignment explanation
Indices: 106325--106364 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
106315 TTTCAAATTT
106325 CTTCATTTTCACTTCAAAATA
1 CTTCATTTTCAC-TCAAAATA
106346 CTTCATTTTTCA-TCAAAAT
1 CTTCA-TTTTCACTCAAAAT
106365 TTTCAACAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.39
21 5 0.28
22 6 0.33
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.45
Consensus pattern (20 bp):
CTTCATTTTCACTCAAAATA
Found at i:108124 original size:21 final size:22
Alignment explanation
Indices: 108078--108122 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
108068 TTTTAAACGA
108078 TTATCAAGGGGGAGAAATTTTT
1 TTATCAAGGGGGAGAAATTTTT
108100 TTATCAAGGGGGAGAAATTTTT
1 TTATCAAGGGGGAGAAATTTTT
108122 T
1 T
108123 ATACGAGAGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.31, C:0.04, G:0.27, T:0.38
Consensus pattern (22 bp):
TTATCAAGGGGGAGAAATTTTT
Found at i:108728 original size:19 final size:20
Alignment explanation
Indices: 108704--108754 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
108694 TTATGCTTTG
**
108704 TATCGATACATGTTC-ATTA
1 TATCGATACATGCACAATTA
*
108723 TATCGATACATGCACAATTG
1 TATCGATACATGCACAATTA
108743 TATCGATACATG
1 TATCGATACATG
108755 AAACTAGCAG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 13 0.46
20 15 0.54
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (20 bp):
TATCGATACATGCACAATTA
Found at i:108748 original size:20 final size:19
Alignment explanation
Indices: 108701--108754 Score: 72
Period size: 19 Copynumber: 2.8 Consensus size: 19
108691 ACATTATGCT
**
108701 TTGTATCGATACATGTTCA
1 TTGTATCGATACATGCACA
*
108720 TTATATCGATACATGCACAA
1 TTGTATCGATACATGCAC-A
108740 TTGTATCGATACATG
1 TTGTATCGATACATG
108755 AAACTAGCAG
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 15 0.50
20 15 0.50
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.37
Consensus pattern (19 bp):
TTGTATCGATACATGCACA
Found at i:111721 original size:21 final size:21
Alignment explanation
Indices: 111697--111753 Score: 96
Period size: 21 Copynumber: 2.7 Consensus size: 21
111687 AAAAAATTTA
* *
111697 AATGTATCGATACATTTTTTG
1 AATGTATCGATACATTTGTGG
111718 AATGTATCGATACATTTGTGG
1 AATGTATCGATACATTTGTGG
111739 AATGTATCGATACAT
1 AATGTATCGATACAT
111754 CCTACAAATG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.40
Consensus pattern (21 bp):
AATGTATCGATACATTTGTGG
Found at i:111833 original size:19 final size:19
Alignment explanation
Indices: 111809--111908 Score: 107
Period size: 19 Copynumber: 5.9 Consensus size: 19
111799 AATTCAACAA
111809 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
111828 TTTGTATCGATAC--AA--
1 TTTGTATCGATACATAAGT
111843 --TGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
111860 TTTGTATCGATAC--AA--
1 TTTGTATCGATACATAAGT
111875 --TGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
*
111892 ATTGTATCGATACATAA
1 TTTGTATCGATACATAA
111909 TTAGCTACTG
Statistics
Matches: 69, Mismatches: 0, Indels: 24
0.74 0.00 0.26
Matches are distributed among these distances:
13 22 0.32
15 4 0.06
17 4 0.06
19 39 0.57
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:111848 original size:13 final size:13
Alignment explanation
Indices: 111830--111886 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
111820 ACATAAGTTT
111830 TGTATCGATACAA
1 TGTATCGATACAA
111843 TGTATCGATACATAA
1 TGTATCGATAC--AA
111858 GTTTTGTATCGATACAA
1 ----TGTATCGATACAA
111875 TGTATCGATACA
1 TGTATCGATACA
111887 TAAGTATTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 23 0.61
15 2 0.05
17 2 0.05
19 11 0.29
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.35
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:111852 original size:32 final size:32
Alignment explanation
Indices: 111811--111905 Score: 181
Period size: 32 Copynumber: 3.0 Consensus size: 32
111801 TTCAACAATT
111811 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTTTTGTATCGATACAA
111843 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTTTTGTATCGATACAA
*
111875 TGTATCGATACATAAGTATTGTATCGATACA
1 TGTATCGATACATAAGTTTTGTATCGATACA
111906 TAATTAGCTA
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 62 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTTTTGTATCGATACAA
Found at i:111966 original size:13 final size:13
Alignment explanation
Indices: 111948--111973 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
111938 CATTTTTCTG
111948 TGTATCGATACAT
1 TGTATCGATACAT
111961 TGTATCGATACAT
1 TGTATCGATACAT
111974 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:111970 original size:33 final size:33
Alignment explanation
Indices: 111928--111994 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
111918 GCCAAGGAAA
***
111928 TGTATCGATACATTTTTCTGTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
*
111961 TGTATCGATACATGGATCTTTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
111994 T
1 T
111995 TGGAAATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.25, C:0.15, G:0.16, T:0.43
Consensus pattern (33 bp):
TGTATCGATACATGGATCTGTGTATCGATACAT
Found at i:114513 original size:28 final size:27
Alignment explanation
Indices: 114446--114518 Score: 94
Period size: 27 Copynumber: 2.7 Consensus size: 27
114436 CTTCACAATC
* *
114446 GGGGACACTCCAACCCCGTTAATCATC
1 GGGGATACTCCAACCCCGTTAATCATA
*
114473 GGGGATACTCCAACCCCGTTATTTC-TGA
1 GGGGATACTCCAACCCCGTTA-ATCAT-A
114501 GGGGATACTCCAACCCCG
1 GGGGATACTCCAACCCCG
114519 ACTTTATTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
27 21 0.51
28 20 0.49
ACGTcount: A:0.23, C:0.34, G:0.22, T:0.21
Consensus pattern (27 bp):
GGGGATACTCCAACCCCGTTAATCATA
Found at i:114563 original size:51 final size:53
Alignment explanation
Indices: 114501--114617 Score: 148
Period size: 51 Copynumber: 2.2 Consensus size: 53
114491 TTATTTCTGA
* * * *
114501 GGGGATACTCCAACCCCGACTTTATTTTCAAAATATCGATTT-TTC-ATAATC
1 GGGGATACTCCAACCCCGACTTTATTTTCAAAACACCAATTTCTCCTATAATC
** * *
114552 GGGGATACTCCAACCCCGGTTTTATTTTCACAACACCAATTTCTCCTTTAATC
1 GGGGATACTCCAACCCCGACTTTATTTTCAAAACACCAATTTCTCCTATAATC
114605 GGGGATACTCCAA
1 GGGGATACTCCAA
114618 TTCCGATTGT
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
51 36 0.64
52 2 0.04
53 18 0.32
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.32
Consensus pattern (53 bp):
GGGGATACTCCAACCCCGACTTTATTTTCAAAACACCAATTTCTCCTATAATC
Found at i:117192 original size:13 final size:13
Alignment explanation
Indices: 117174--117199 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
117164 CAAAGAATAG
117174 ATGTATCGATACA
1 ATGTATCGATACA
117187 ATGTATCGATACA
1 ATGTATCGATACA
117200 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:117196 original size:34 final size:33
Alignment explanation
Indices: 117153--117219 Score: 107
Period size: 34 Copynumber: 2.0 Consensus size: 33
117143 AACTTCCTAG
*
117153 ATGTATCGATACAAAGAATAGATGTATCGATACA
1 ATGTATCGATACAAAGAA-AAATGTATCGATACA
*
117187 ATGTATCGATACACAGAAAAATGTATCGATACA
1 ATGTATCGATACAAAGAAAAATGTATCGATACA
117220 TTTCCTTGGC
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 14 0.45
34 17 0.55
ACGTcount: A:0.45, C:0.13, G:0.16, T:0.25
Consensus pattern (33 bp):
ATGTATCGATACAAAGAAAAATGTATCGATACA
Found at i:117626 original size:20 final size:20
Alignment explanation
Indices: 117603--117655 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
117593 CATTTCAGAC
*
117603 ATGTATCGATACATTCATTT
1 ATGTATCGATACATTCACTT
*
117623 ATGTATCGATATATTCACTT
1 ATGTATCGATACATTCACTT
* *
117643 ATGAATTGATACA
1 ATGTATCGATACA
117656 AATTATAGAA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.34, C:0.13, G:0.11, T:0.42
Consensus pattern (20 bp):
ATGTATCGATACATTCACTT
Found at i:120292 original size:79 final size:79
Alignment explanation
Indices: 120159--120859 Score: 1091
Period size: 79 Copynumber: 8.9 Consensus size: 79
120149 AAATAAAATT
* * * * *
120159 GGGGTTAGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAATCGGGGTTGGAGTATC
1 GGGGTTGGAGTATCCCCGATTGTGAAAAATTAATATTTTAGAAATAAAACCGGGGTTGGAGTATC
120224 CCCTCGGAAATAAC
66 CCCTCGGAAATAAC
* ** * *
120238 GGGGTTGGAGTATCCCCGATTATGAAAAATTGGTGTTTTAGAGATAAAACCGGGGTTGGAGTATC
1 GGGGTTGGAGTATCCCCGATTGTGAAAAATTAATATTTTAGAAATAAAACCGGGGTTGGAGTATC
120303 CCCTCGGAAATAAC
66 CCCTCGGAAATAAC
* * *
120317 GGGGTTGGAGTATCCCCGATTGTGAAAAATTAATGTTTTAGAGATAAAACCGGGGTTAGAGTATC
1 GGGGTTGGAGTATCCCCGATTGTGAAAAATTAATATTTTAGAAATAAAACCGGGGTTGGAGTATC
*
120382 CCCTCGAAAATAAC
66 CCCTCGGAAATAAC
* * *
120396 GGGGTTGGAGTATCCCCGATTGTGAAAAATTAATATTTTAGAAATAAAGCCGGTGTTGGAGTATT
1 GGGGTTGGAGTATCCCCGATTGTGAAAAATTAATATTTTAGAAATAAAACCGGGGTTGGAGTATC
*
120461 CCCTCGGAAATAAT
66 CCCTCGGAAATAAC
** *
120475 GGGGTTGGAGTATCCCCGATTGTGAAAAATTAATATTTTAGAAATAAAGTCGAGGTTGGAGTATC
1 GGGGTTGGAGTATCCCCGATTGTGAAAAATTAATATTTTAGAAATAAAACCGGGGTTGGAGTATC
*
120540 CCCTCGGAAATAAT
66 CCCTCGGAAATAAC
* *
120554 GGGGTTGGAGTATCCCCGATTGTGAAAAATTAATGTTTTAGAGATAAAACCGGGGTTGGAGTATC
1 GGGGTTGGAGTATCCCCGATTGTGAAAAATTAATATTTTAGAAATAAAACCGGGGTTGGAGTATC
**
120619 CCCTCAAAAATAAC
66 CCCTCGGAAATAAC
* * *
120633 GGGGTTGGAGTA-CCCCGATTGTGAAAAATTAATATTTTAGAAATAAAGCCGGGGTTGGAGTTTT
1 GGGGTTGGAGTATCCCCGATTGTGAAAAATTAATATTTTAGAAATAAAACCGGGGTTGGAGTATC
*
120697 CCCTCGGAAATAAT
66 CCCTCGGAAATAAC
*
120711 GGGGTTGGAGTATCCCCGATTGTGAAAAATTAATATTTTAGAAATAAAGCCGGGGTTGGAGTATC
1 GGGGTTGGAGTATCCCCGATTGTGAAAAATTAATATTTTAGAAATAAAACCGGGGTTGGAGTATC
120776 CCCTCGGAAATAA-
66 CCCTCGGAAATAAC
* *
120789 TGGGTTGGAGTATCCCCGATTGTGAAAAATTAATATTTTAGAAAAAAAACCGGGGTTGGAGTATC
1 GGGGTTGGAGTATCCCCGATTGTGAAAAATTAATATTTTAGAAATAAAACCGGGGTTGGAGTATC
120854 CCCTCG
66 CCCTCG
120860 ATTAAAGGAA
Statistics
Matches: 579, Mismatches: 42, Indels: 3
0.93 0.07 0.00
Matches are distributed among these distances:
78 138 0.24
79 441 0.76
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (79 bp):
GGGGTTGGAGTATCCCCGATTGTGAAAAATTAATATTTTAGAAATAAAACCGGGGTTGGAGTATC
CCCTCGGAAATAAC
Found at i:122236 original size:21 final size:21
Alignment explanation
Indices: 122210--122275 Score: 74
Period size: 21 Copynumber: 3.5 Consensus size: 21
122200 CATACCCATC
122210 ATTCCATGCCTTCATTTTTAT
1 ATTCCATGCCTTCATTTTTAT
*
122231 ATTCCATGCC--CA---TCAT
1 ATTCCATGCCTTCATTTTTAT
122247 ATT--ATGCCTTCATTTTTAT
1 ATTCCATGCCTTCATTTTTAT
122266 ATTCCATGCC
1 ATTCCATGCC
122276 CATCATTCCA
Statistics
Matches: 36, Mismatches: 2, Indels: 14
0.69 0.04 0.27
Matches are distributed among these distances:
14 5 0.14
16 8 0.22
19 8 0.22
21 15 0.42
ACGTcount: A:0.21, C:0.27, G:0.06, T:0.45
Consensus pattern (21 bp):
ATTCCATGCCTTCATTTTTAT
Done.