Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold398
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1204187
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 4 of 7
Found at i:509924 original size:19 final size:19
Alignment explanation
Indices: 509892--509928 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
509882 ATTTTAATAT
* *
509892 ATTAATTATTTTTATATAA
1 ATTAAATATATTTATATAA
509911 ATTAAATATATTTATATA
1 ATTAAATATATTTATATA
509929 TTTATATTAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (19 bp):
ATTAAATATATTTATATAA
Found at i:509930 original size:29 final size:30
Alignment explanation
Indices: 509862--509931 Score: 90
Period size: 29 Copynumber: 2.4 Consensus size: 30
509852 TTATTTTTAA
* * *
509862 ATTATTATATATTTATATAAATTTTAATAT
1 ATTAATATATTTTTATATAAATTTAAATAT
509892 ATTAAT-TATTTTTATATAAA-TTAAATAT
1 ATTAATATATTTTTATATAAATTTAAATAT
*
509920 ATTTATATATTT
1 ATTAATATATTT
509932 ATATTACATT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
28 12 0.34
29 18 0.51
30 5 0.14
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (30 bp):
ATTAATATATTTTTATATAAATTTAAATAT
Found at i:510152 original size:2 final size:2
Alignment explanation
Indices: 510147--510192 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
510137 CCCCCCCCTT
510147 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
510189 TC TC
1 TC TC
510193 ATAGATGATA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:510588 original size:20 final size:19
Alignment explanation
Indices: 510542--510592 Score: 57
Period size: 20 Copynumber: 2.6 Consensus size: 19
510532 TACATACGTC
*
510542 AATATTTTATTAAAATTTA
1 AATATTTTTTTAAAATTTA
* *
510561 AATAATTTTTTTAATATTGTT
1 AAT-ATTTTTTTAAAATT-TA
510582 AATATTTTTTT
1 AATATTTTTTT
510593 TACAATTTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 3 0.11
20 20 0.74
21 4 0.15
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (19 bp):
AATATTTTTTTAAAATTTA
Found at i:510603 original size:20 final size:18
Alignment explanation
Indices: 510542--510603 Score: 52
Period size: 21 Copynumber: 3.1 Consensus size: 18
510532 TACATACGTC
* *
510542 AATATTTTATTAAAATTTA
1 AATATTTT-TTTAAATTTT
510561 AATAATTTTTTTAATATTGTT
1 AAT-ATTTTTTTAA-ATT-TT
510582 AATATTTTTTTTACAATTTT
1 AATA-TTTTTTTA-AATTTT
510602 AA
1 AA
510604 AATTATAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
19 7 0.19
20 13 0.36
21 15 0.42
22 1 0.03
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.58
Consensus pattern (18 bp):
AATATTTTTTTAAATTTT
Found at i:513290 original size:18 final size:18
Alignment explanation
Indices: 513267--513301 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
513257 TAAATATAAT
513267 TATAAAAGA-AAAAAATAG
1 TATAAAA-ATAAAAAATAG
513285 TATAAAAATAAAAAATA
1 TATAAAAATAAAAAATA
513302 TTATTTTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 1 0.06
18 15 0.94
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.20
Consensus pattern (18 bp):
TATAAAAATAAAAAATAG
Found at i:513489 original size:36 final size:36
Alignment explanation
Indices: 513416--513508 Score: 96
Period size: 36 Copynumber: 2.6 Consensus size: 36
513406 TTTGATCTTA
* * * ***
513416 TAATCGTAATCAAAATATTAAGAGATTATGCTATTG
1 TAATCGTAATTAGAATATTAAAAGATTACAATATTG
*
513452 TAATCGTAATTAGAATATTAAAAGATTACAATTTTG
1 TAATCGTAATTAGAATATTAAAAGATTACAATATTG
** *
513488 TAATTATAATTAGAGTATTAA
1 TAATCGTAATTAGAATATTAA
513509 GAGAATACGA
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
36 47 1.00
ACGTcount: A:0.44, C:0.05, G:0.12, T:0.39
Consensus pattern (36 bp):
TAATCGTAATTAGAATATTAAAAGATTACAATATTG
Found at i:514480 original size:124 final size:124
Alignment explanation
Indices: 514260--514507 Score: 471
Period size: 124 Copynumber: 2.0 Consensus size: 124
514250 GTGCGGATCA
*
514260 GACTTGTATCTAGCATTGGCGTATCCAACTAAAATCGAATTAGTGAATTCTTTGGAAAAGAATAA
1 GACTTGTATCTAGCATTAGCGTATCCAACTAAAATCGAATTAGTGAATTCTTTGGAAAAGAATAA
514325 ACCTAAGTCCATGGTTTCATAGAGATAGTGAAAAATATGCTTAATCCTATTCCAATGTC
66 ACCTAAGTCCATGGTTTCATAGAGATAGTGAAAAATATGCTTAATCCTATTCCAATGTC
514384 GACTTGTATCTAGCATTAGCGTATCCAAC-AAACATCGAATTAGTGAATTCTTTGGAAAAGAATA
1 GACTTGTATCTAGCATTAGCGTATCCAACTAAA-ATCGAATTAGTGAATTCTTTGGAAAAGAATA
514448 AACCTAAGTCCATGGTTTCATAGAGATAGTGAAAAATATGCTTAATCCTATTCCAATGTC
65 AACCTAAGTCCATGGTTTCATAGAGATAGTGAAAAATATGCTTAATCCTATTCCAATGTC
514508 TTTTTGTTGG
Statistics
Matches: 122, Mismatches: 1, Indels: 2
0.98 0.01 0.02
Matches are distributed among these distances:
123 3 0.02
124 119 0.98
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.31
Consensus pattern (124 bp):
GACTTGTATCTAGCATTAGCGTATCCAACTAAAATCGAATTAGTGAATTCTTTGGAAAAGAATAA
ACCTAAGTCCATGGTTTCATAGAGATAGTGAAAAATATGCTTAATCCTATTCCAATGTC
Found at i:519662 original size:20 final size:20
Alignment explanation
Indices: 519637--519674 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
519627 TGTTTTTCTC
*
519637 CCAAAACAAAGCTGAGGCAA
1 CCAAAACAAAGCTCAGGCAA
519657 CCAAAACAAAGCTCAGGC
1 CCAAAACAAAGCTCAGGC
519675 TGCCCCTCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.47, C:0.29, G:0.18, T:0.05
Consensus pattern (20 bp):
CCAAAACAAAGCTCAGGCAA
Found at i:519973 original size:20 final size:19
Alignment explanation
Indices: 519948--520021 Score: 94
Period size: 20 Copynumber: 3.7 Consensus size: 19
519938 AAAATGCCTG
*
519948 AATGTATCGATACATTATAA
1 AATGTATCGATACAATA-AA
519968 AATGTATCGATACAATAAA
1 AATGTATCGATACAATAAA
*
519987 CAATGTATCGATACAATGCAA
1 -AATGTATCGATACAAT-AAA
*
520008 AATGTATCAATACA
1 AATGTATCGATACA
520022 TCTGGGTAAA
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
19 2 0.04
20 45 0.92
21 2 0.04
ACGTcount: A:0.47, C:0.14, G:0.11, T:0.28
Consensus pattern (19 bp):
AATGTATCGATACAATAAA
Found at i:522532 original size:13 final size:13
Alignment explanation
Indices: 522514--522538 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
522504 CAATTCATCA
522514 TGTATCGATACAT
1 TGTATCGATACAT
522527 TGTATCGATACA
1 TGTATCGATACA
522539 ATGTGCCATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:522536 original size:33 final size:33
Alignment explanation
Indices: 522494--522556 Score: 94
Period size: 33 Copynumber: 1.9 Consensus size: 33
522484 TTTGAAGCAA
522494 TGTATCGATACAAT-T-CATCATGTATCGATACAT
1 TGTATCGATACAATGTGC--CATGTATCGATACAT
522527 TGTATCGATACAATGTGCCATGTATCGATA
1 TGTATCGATACAATGTGCCATGTATCGATA
522557 TAAACAGTGG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
33 26 0.93
34 1 0.04
35 1 0.04
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.35
Consensus pattern (33 bp):
TGTATCGATACAATGTGCCATGTATCGATACAT
Found at i:522632 original size:19 final size:19
Alignment explanation
Indices: 522588--522643 Score: 85
Period size: 19 Copynumber: 2.9 Consensus size: 19
522578 CTGCCAGTTT
**
522588 CATGTATCGATACAATTGTG
1 CATGTATCGATACAA-TGAA
522608 CATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
522627 CATGTATCGATACAATG
1 CATGTATCGATACAATG
522644 TATAGATACA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
19 19 0.56
20 15 0.44
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.30
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:529484 original size:20 final size:20
Alignment explanation
Indices: 529431--529504 Score: 89
Period size: 20 Copynumber: 3.7 Consensus size: 20
529421 TGCCAGTTTC
*
529431 ATGTATCGATACAATTGTGC-
1 ATGTATCGATAC-ATTATGCT
529451 ATGTATCGATACATTATGCT
1 ATGTATCGATACATTATGCT
* *
529471 TTGTATCGATACATCTA-GAT
1 ATGTATCGATACAT-TATGCT
529491 ATGTATCGATACAT
1 ATGTATCGATACAT
529505 ACAAGGGTTT
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
19 6 0.12
20 40 0.83
21 2 0.04
ACGTcount: A:0.31, C:0.15, G:0.16, T:0.38
Consensus pattern (20 bp):
ATGTATCGATACATTATGCT
Found at i:531259 original size:21 final size:20
Alignment explanation
Indices: 531212--531265 Score: 81
Period size: 20 Copynumber: 2.6 Consensus size: 20
531202 CATTTCAGAC
* *
531212 ATGTATCAATACATTCACTT
1 ATGTATCGATACATCCACTT
531232 ATGTATCGATACATCCACTT
1 ATGTATCGATACATCCACTT
531252 ATTGTATCGATACA
1 A-TGTATCGATACA
531266 AATTGTTGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
20 19 0.61
21 12 0.39
ACGTcount: A:0.33, C:0.20, G:0.09, T:0.37
Consensus pattern (20 bp):
ATGTATCGATACATCCACTT
Found at i:532502 original size:19 final size:20
Alignment explanation
Indices: 532478--532516 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
532468 AAACTCCACA
532478 TTTATCTCAAT-AAT-TAATT
1 TTTATCT-AATGAATATAATT
532497 TTTATCTAATGAATATAATT
1 TTTATCTAATGAATATAATT
532517 ATCCAATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 3 0.17
19 10 0.56
20 5 0.28
ACGTcount: A:0.38, C:0.08, G:0.03, T:0.51
Consensus pattern (20 bp):
TTTATCTAATGAATATAATT
Found at i:534810 original size:50 final size:52
Alignment explanation
Indices: 534747--534889 Score: 159
Period size: 52 Copynumber: 2.8 Consensus size: 52
534737 TCTAGAATGA
* * *
534747 AAATCTATCGATACATT-TTTCATTGTATCAATACATTAT-GGGTTTTGAC-C
1 AAATGTATTGATACATTCTTT-ATTGTATCAATACATTATAGGGTTTTAACGC
** * * *
534797 AAATGTATTGATACATTCTTTATTGTATTGATATATTCTAGGTTTTTAACGC
1 AAATGTATTGATACATTCTTTATTGTATCAATACATTATAGGGTTTTAACGC
* *
534849 AAATGTATTGATACATTCTTTAATCTATCAATACA-TATAGG
1 AAATGTATTGATACATTCTTTATTGTATCAATACATTATAGG
534890 CAAATTTACA
Statistics
Matches: 76, Mismatches: 14, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
50 29 0.38
51 16 0.21
52 31 0.41
ACGTcount: A:0.32, C:0.13, G:0.12, T:0.43
Consensus pattern (52 bp):
AAATGTATTGATACATTCTTTATTGTATCAATACATTATAGGGTTTTAACGC
Found at i:540898 original size:13 final size:13
Alignment explanation
Indices: 540880--540904 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
540870 CATTATGCTT
540880 TGTATCGATACAA
1 TGTATCGATACAA
540893 TGTATCGATACA
1 TGTATCGATACA
540905 TGTTCATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:540900 original size:33 final size:32
Alignment explanation
Indices: 540858--540923 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 32
540848 TACACACCCA
*
540858 AATGTATCGATACAT-TATGCTTTGTATCGATAC
1 AATGTATCGATACATGT-T-CATTGTATCGATAC
540891 AATGTATCGATACATGTTCATTGTATCGATAC
1 AATGTATCGATACATGTTCATTGTATCGATAC
540923 A
1 A
540924 TGGACAATTG
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
32 14 0.45
33 16 0.52
34 1 0.03
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.38
Consensus pattern (32 bp):
AATGTATCGATACATGTTCATTGTATCGATAC
Found at i:540935 original size:20 final size:20
Alignment explanation
Indices: 540889--540945 Score: 82
Period size: 19 Copynumber: 3.0 Consensus size: 20
540879 TTGTATCGAT
*
540889 ACAA-TGTATCGATACATGT
1 ACAATTGTATCGATACATGG
*
540908 TC-ATTGTATCGATACATGG
1 ACAATTGTATCGATACATGG
540927 ACAATTGTATCGATACATG
1 ACAATTGTATCGATACATG
540946 AAACTGGCAG
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
18 1 0.03
19 16 0.48
20 16 0.48
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Consensus pattern (20 bp):
ACAATTGTATCGATACATGG
Found at i:549687 original size:13 final size:13
Alignment explanation
Indices: 549669--549693 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
549659 CATTATGCTT
549669 TGTATCGATACAA
1 TGTATCGATACAA
549682 TGTATCGATACA
1 TGTATCGATACA
549694 TGTTCATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:549690 original size:33 final size:31
Alignment explanation
Indices: 549648--549714 Score: 91
Period size: 33 Copynumber: 2.1 Consensus size: 31
549638 ACACACCCAG
*
549648 ATGTATCGATACAT-TATGCTTTGTATCGATACA
1 ATGTATCGATACATGT-T-CATTGTATCGATA-A
549681 ATGTATCGATACATGTTCATTGTATCGATAA
1 ATGTATCGATACATGTTCATTGTATCGATAA
549712 ATG
1 ATG
549715 GACAATTATA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
31 4 0.12
32 12 0.38
33 15 0.47
34 1 0.03
ACGTcount: A:0.31, C:0.13, G:0.16, T:0.39
Consensus pattern (31 bp):
ATGTATCGATACATGTTCATTGTATCGATAA
Found at i:549706 original size:19 final size:20
Alignment explanation
Indices: 549678--549733 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 20
549668 TTGTATCGAT
*
549678 ACAA-TGTATCGATACATGT
1 ACAATTGTATCGATACATGG
* *
549697 TC-ATTGTATCGATAAATGG
1 ACAATTGTATCGATACATGG
*
549716 ACAATTATATCGATACAT
1 ACAATTGTATCGATACAT
549734 AAAACTGGTA
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
18 1 0.03
19 15 0.52
20 13 0.45
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (20 bp):
ACAATTGTATCGATACATGG
Found at i:549788 original size:20 final size:20
Alignment explanation
Indices: 549763--549801 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
549753 CTACCACTGT
549763 TTGTATCGATACATGGTATA
1 TTGTATCGATACATGGTATA
*
549783 TTGTATCGATACATTGTAT
1 TTGTATCGATACATGGTAT
549802 CGATACATGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.18, T:0.44
Consensus pattern (20 bp):
TTGTATCGATACATGGTATA
Found at i:549798 original size:13 final size:13
Alignment explanation
Indices: 549782--549809 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
549772 TACATGGTAT
549782 ATTGTATCGATAC
1 ATTGTATCGATAC
549795 ATTGTATCGATAC
1 ATTGTATCGATAC
549808 AT
1 AT
549810 GATAAATTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.39
Consensus pattern (13 bp):
ATTGTATCGATAC
Found at i:549800 original size:33 final size:33
Alignment explanation
Indices: 549763--549831 Score: 111
Period size: 33 Copynumber: 2.1 Consensus size: 33
549753 CTACCACTGT
* *
549763 TTGTATCGATACATGGTATATTGTATCGATACA
1 TTGTATCGATACATGATAAATTGTATCGATACA
*
549796 TTGTATCGATACATGATAAATTGTATTGATACA
1 TTGTATCGATACATGATAAATTGTATCGATACA
549829 TTG
1 TTG
549832 CTTGTAACGG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.32, C:0.10, G:0.17, T:0.41
Consensus pattern (33 bp):
TTGTATCGATACATGATAAATTGTATCGATACA
Found at i:549813 original size:20 final size:20
Alignment explanation
Indices: 549790--549829 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
549780 ATATTGTATC
*
549790 GATACATTGTATCGATACAT
1 GATAAATTGTATCGATACAT
*
549810 GATAAATTGTATTGATACAT
1 GATAAATTGTATCGATACAT
549830 TGCTTGTAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.38
Consensus pattern (20 bp):
GATAAATTGTATCGATACAT
Found at i:553528 original size:80 final size:82
Alignment explanation
Indices: 553435--553657 Score: 199
Period size: 81 Copynumber: 2.8 Consensus size: 82
553425 CGATAGAATA
** ** *
553435 TATGGACCTAAACCTAA-AGACTCAATTT-TGATGTAAGGTAGGAAACCTAAGTTAAACTAAGAC
1 TATGGACCTAAACCTAATAGACTCAATTTCT-ATAAAAAATAGGAAACCTAAATTAAACTAAGAC
553498 CTGGTTTCAAC-GAAAAG
65 CTGGTTTCAACAGAAAAG
* * ** * *
553515 TATGGACTTAAACCTAATGGACTCGGTTTCTATAAAAAATAGGAAACCTAAATTAAACTAAGGCT
1 TATGGACCTAAACCTAATAGACTCAATTTCTATAAAAAATAGGAAACCTAAATTAAACTAAGACC
553580 TGGTTTCAACAG-AAAG
66 TGGTTTCAACAGAAAAG
** * * *** * *
553596 TAAAGACCTAAATCTGAA-AGATTTGGTTTCTATGAAAAGTAGG--ACCTAAATTAAACTAAGAC
1 TATGGACCTAAACCT-AATAGACTCAATTTCTATAAAAAATAGGAAACCTAAATTAAACTAAGAC
553658 TCCATATCAA
Statistics
Matches: 118, Mismatches: 21, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
79 18 0.15
80 16 0.14
81 80 0.68
82 4 0.03
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.26
Consensus pattern (82 bp):
TATGGACCTAAACCTAATAGACTCAATTTCTATAAAAAATAGGAAACCTAAATTAAACTAAGACC
TGGTTTCAACAGAAAAG
Found at i:553596 original size:81 final size:81
Alignment explanation
Indices: 553473--553657 Score: 216
Period size: 81 Copynumber: 2.3 Consensus size: 81
553463 TGATGTAAGG
* ** * *
553473 TAGGAAACCTAAGTTAAACTAAGACCTGGTTTCAACGAAAAGTATGGACTTAAACCT-AATGGAC
1 TAGGAAACCTAAATTAAACTAAGACCTGGTTTCAACGAAAAGTAAAGACCTAAACCTGAA-AGAC
553537 TCGGTTTCTATAAAAAA
65 TCGGTTTCTATAAAAAA
* * * *
553554 TAGGAAACCTAAATTAAACTAAGGCTTGGTTTCAAC-AGAAAGTAAAGACCTAAATCTGAAAGAT
1 TAGGAAACCTAAATTAAACTAAGACCTGGTTTCAACGA-AAAGTAAAGACCTAAACCTGAAAGAC
* * *
553618 TTGGTTTCTATGAAAAG
65 TCGGTTTCTATAAAAAA
553635 TAGG--ACCTAAATTAAACTAAGAC
1 TAGGAAACCTAAATTAAACTAAGAC
553658 TCCATATCAA
Statistics
Matches: 89, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
79 18 0.20
80 1 0.01
81 68 0.76
82 2 0.02
ACGTcount: A:0.42, C:0.15, G:0.17, T:0.26
Consensus pattern (81 bp):
TAGGAAACCTAAATTAAACTAAGACCTGGTTTCAACGAAAAGTAAAGACCTAAACCTGAAAGACT
CGGTTTCTATAAAAAA
Found at i:555734 original size:32 final size:33
Alignment explanation
Indices: 555674--555735 Score: 83
Period size: 32 Copynumber: 1.9 Consensus size: 33
555664 ACCCAGAAGT
*
555674 ATCGATACATATTGCTTTGTATCAATACACTGC
1 ATCGATACATATTGCTTGGTATCAATACACTGC
*
555707 ATCGATACATGA-T-CTTGGTATCGATACAC
1 ATCGATACAT-ATTGCTTGGTATCAATACAC
555736 AATGAATTGT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
32 14 0.54
33 11 0.42
34 1 0.04
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.34
Consensus pattern (33 bp):
ATCGATACATATTGCTTGGTATCAATACACTGC
Found at i:562007 original size:22 final size:22
Alignment explanation
Indices: 561982--562025 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
561972 AACAAGTGAG
**
561982 GAAAAAAGAATCAACAATCAAA
1 GAAAAAAGAAAAAACAATCAAA
*
562004 GAAAGAAGAAAAAACAATCAAA
1 GAAAAAAGAAAAAACAATCAAA
562026 AGCAAAGGAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.70, C:0.11, G:0.11, T:0.07
Consensus pattern (22 bp):
GAAAAAAGAAAAAACAATCAAA
Found at i:562036 original size:22 final size:21
Alignment explanation
Indices: 561994--562040 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 21
561984 AAAAAGAATC
561994 AACAATCAAAGAAAGAAGAAAA
1 AACAATCAAAGAAAG-AGAAAA
562016 AACAATCAAAAGCAAAG-GAAAA
1 AACAATC-AAAG-AAAGAGAAAA
562038 AAC
1 AAC
562041 TTACAAATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 15 0.65
23 4 0.17
24 4 0.17
ACGTcount: A:0.70, C:0.13, G:0.13, T:0.04
Consensus pattern (21 bp):
AACAATCAAAGAAAGAGAAAA
Found at i:567882 original size:112 final size:112
Alignment explanation
Indices: 567646--567882 Score: 253
Period size: 112 Copynumber: 2.1 Consensus size: 112
567636 AACTTGGAAG
** *** * *
567646 AACATCAAATTTATTTAATTTTCAAAGAAATTCATGTTTTGTACATCTTGATCCATTCGTGCCTA
1 AACATCAAATTTGCTTAATTTTCAAAGAAATTCACACTTTATACATCTTGATCCATTCGTACCTA
* * ** *
567711 AGGAAATGGGCACATATCTTGTCAGTTTCGATCTTTTTGAGCCCCAC
66 AGGAAATGAGCACATATCTTATCAGTTTCGAAATCTTTGAGCCCCAC
* * * ** *
567758 AACATTAGATTTGCTTAATTTTCGAAGAAATTCACACTTTATATGT-TTCGATTCATTCGTACCT
1 AACATCAAATTTGCTTAATTTTCAAAGAAATTCACACTTTATACATCTT-GATCCATTCGTACCT
* * *
567822 -AGGAAATAGAGCACGTATCTTATCAGTTTTGAAATCTTTGAGCCCCGC
65 AAGGAAAT-GAGCACATATCTTATCAGTTTCGAAATCTTTGAGCCCCAC
567870 AACATCAAATTTG
1 AACATCAAATTTG
567883 TTGGATTTTG
Statistics
Matches: 100, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
111 9 0.09
112 91 0.91
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (112 bp):
AACATCAAATTTGCTTAATTTTCAAAGAAATTCACACTTTATACATCTTGATCCATTCGTACCTA
AGGAAATGAGCACATATCTTATCAGTTTCGAAATCTTTGAGCCCCAC
Found at i:568376 original size:88 final size:86
Alignment explanation
Indices: 568226--568525 Score: 251
Period size: 88 Copynumber: 3.4 Consensus size: 86
568216 TTCATCTTTT
* * * * * * * *
568226 CATATGCTTTTGCCTTCCTATTGATGCTTGCATTTGCATCATTTCACCTGGATATGCGTTTTAGA
1 CATATGCATTTGCCTT-TTATTAATGCTTGCATTTGCATAATTTTACATGCAT-TGCATTTTAGA
*
568291 TAACATTGGTATTTGCATTATTC
64 TAACATTGGTATTTGCATCATTC
* * *
568314 CATATGCATTTGCCCTTTTATTAATGTTTGCATTTGCATTATTTTACATACATCTGCATTTTAGA
1 CATATGCATTTG-CCTTTTATTAATGCTTGCATTTGCATAATTTTACATGCAT-TGCATTTTAGA
* * * * *
568379 TGATAGTAGTATTTGCATCATTG
64 TAACATTGGTATTTGCATCATTC
*** * * * * * *
568402 CATATATGTTTGCCTTTTGTTAATGCTTGCATTTGTATAAATTTACATGCATTTCA-TTCATATA
1 CATATGCATTTGCCTTTTATTAATGCTTGCATTTGCATAATTTTACATGCATTGCATTTTAGATA
* *
568466 ACATTGGCATTTGCATCATTT
66 ACATTGGTATTTGCATCATTC
* * * * *
568487 AATATGCATTTGCCACTTTACTAATGCCTGTATTTGCAT
1 CATATGCATTTGCC-TTTTATTAATGCTTGCATTTGCAT
568526 TGTTTCATGC
Statistics
Matches: 165, Mismatches: 45, Indels: 6
0.76 0.21 0.03
Matches are distributed among these distances:
85 31 0.19
86 21 0.13
87 34 0.21
88 75 0.45
89 4 0.02
ACGTcount: A:0.24, C:0.17, G:0.14, T:0.45
Consensus pattern (86 bp):
CATATGCATTTGCCTTTTATTAATGCTTGCATTTGCATAATTTTACATGCATTGCATTTTAGATA
ACATTGGTATTTGCATCATTC
Found at i:568469 original size:20 final size:20
Alignment explanation
Indices: 568446--568499 Score: 56
Period size: 22 Copynumber: 2.6 Consensus size: 20
568436 GTATAAATTT
568446 ACATGCATTT-CATTCATATA
1 ACATGCATTTGCA-TCATATA
*
568466 ACATTGGCATTTGCATCATTTA
1 ACA-T-GCATTTGCATCATATA
*
568488 ATATGCATTTGC
1 ACATGCATTTGC
568500 CACTTTACTA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
20 11 0.38
21 2 0.07
22 14 0.48
23 2 0.07
ACGTcount: A:0.30, C:0.19, G:0.11, T:0.41
Consensus pattern (20 bp):
ACATGCATTTGCATCATATA
Found at i:568900 original size:20 final size:20
Alignment explanation
Indices: 568875--568925 Score: 102
Period size: 20 Copynumber: 2.5 Consensus size: 20
568865 TGATGACATT
568875 TGTATTTGCCTTGTTTCAAG
1 TGTATTTGCCTTGTTTCAAG
568895 TGTATTTGCCTTGTTTCAAG
1 TGTATTTGCCTTGTTTCAAG
568915 TGTATTTGCCT
1 TGTATTTGCCT
568926 CTTTACTAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.14, C:0.16, G:0.20, T:0.51
Consensus pattern (20 bp):
TGTATTTGCCTTGTTTCAAG
Found at i:569384 original size:78 final size:78
Alignment explanation
Indices: 569241--569519 Score: 301
Period size: 78 Copynumber: 3.6 Consensus size: 78
569231 ATCTAATCCT
* * * ** * *
569241 TAGAGGATATTCATGCATCACTTGGCCATGAGGGGCACTTCCCACTCACTTCCAGTCGTAGCCCT
1 TAGATGATATTAATGCATCACATGGCCAAAAGGGGCACTTCCCACTCACTTCCAGTCATATCCCT
*
569306 CATTCTCAAATAC
66 CATTCTCAAACAC
* * * * *
569319 TAGATGATATTGATGCATCACATAGCCAAAAGGGGCACTTCGCATTCACTTCTAGTCATATCCCT
1 TAGATGATATTAATGCATCACATGGCCAAAAGGGGCACTTCCCACTCACTTCCAGTCATATCCCT
569384 CATT-TCTAAACAC
66 CATTCTC-AAACAC
* * * * * * ** *
569397 TATATGATATTAATGGATCATATGACCAAGAGGGGCATTTCCCACTTGCTTCCAGTCGTATCCCT
1 TAGATGATATTAATGCATCACATGGCCAAAAGGGGCACTTCCCACTCACTTCCAGTCATATCCCT
**
569462 CATTCTTGAACAC
66 CATTCTCAAACAC
*
569475 TAGATGATATTAATGCATCAAATGGCCAAGAA-GGGCACTTCCCAC
1 TAGATGATATTAATGCATCACATGGCCAA-AAGGGGCACTTCCCAC
569520 ACATTTCTAA
Statistics
Matches: 164, Mismatches: 34, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
77 2 0.01
78 160 0.98
79 2 0.01
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (78 bp):
TAGATGATATTAATGCATCACATGGCCAAAAGGGGCACTTCCCACTCACTTCCAGTCATATCCCT
CATTCTCAAACAC
Found at i:569528 original size:156 final size:156
Alignment explanation
Indices: 569258--569617 Score: 386
Period size: 156 Copynumber: 2.3 Consensus size: 156
569248 TATTCATGCA
* * * ** * *
569258 TCACTTGGCCATGAGGGGCACTTCCCACTCACTTCCAGTCGTAGCCCTCATTCTCAAATACTAGA
1 TCACTTGACCAAGAGGGGCATTTCCCACTTGCTTCCAGTCGTATCCCTCATTCTCAAACACTAGA
* * * ** * * *
569323 TGATATTGATGCATCACATAGCCAAAAGGGGCACTTCGCATTCACTTCTAGTCATATCCCTCATT
66 TGATATTAATGCATCAAATAGCCAAAAGGGGCACTTCCCACACACTTCTAATCATATCACTCCTT
*
569388 -TCTAAACACTATATGATATTAATG-G
131 CTC-AAACACTAAATGATATTAATGTG
**
569413 ATCA-TATGACCAAGAGGGGCATTTCCCACTTGCTTCCAGTCGTATCCCTCATTCTTGAACACTA
1 -TCACT-TGACCAAGAGGGGCATTTCCCACTTGCTTCCAGTCGTATCCCTCATTCTCAAACACTA
* * * *
569477 GATGATATTAATGCATCAAATGGCCAAGAA-GGGCACTTCCCACACATTTCTAATTATATCATTC
64 GATGATATTAATGCATCAAATAGCCAA-AAGGGGCACTTCCCACACACTTCTAATCATATCACTC
* *
569541 CTTCTCAAATACTAAATGATATTGATGTG
128 CTTCTCAAACACTAAATGATATTAATGTG
* * * * * *
569570 TCACTTGGCCATGAGGGGCATTTCCTACATGTTTCCAATCGTATCCCT
1 TCACTTGACCAAGAGGGGCATTTCCCACTTGCTTCCAGTCGTATCCCT
569618 TTTCCTGAAC
Statistics
Matches: 169, Mismatches: 30, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
155 1 0.01
156 162 0.96
157 6 0.04
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.31
Consensus pattern (156 bp):
TCACTTGACCAAGAGGGGCATTTCCCACTTGCTTCCAGTCGTATCCCTCATTCTCAAACACTAGA
TGATATTAATGCATCAAATAGCCAAAAGGGGCACTTCCCACACACTTCTAATCATATCACTCCTT
CTCAAACACTAAATGATATTAATGTG
Found at i:570209 original size:84 final size:83
Alignment explanation
Indices: 570089--570785 Score: 541
Period size: 84 Copynumber: 8.3 Consensus size: 83
570079 CTTTCATCTT
* * * *
570089 ATTATTTACCTATCAGTTTAATCCCCAG-TAAACCCATTACCCTTATGGTGACTTGTCAGCTCAG
1 ATTATTTACCTGTCAGCTTAGT-CCC-GTTAAGCCCATTACCCTTATGGTGACTTGTCAGCTCAG
*
570153 TCTCCGGTCAACCTTCATTC
64 TCTCCGGTCAACCTTCATCC
* * *
570173 ATTATTTACCTGTCGGCTTAATCTCCGTTAAGCCCATTACCCTTATGGTGA-TCTGTCAGCTTAG
1 ATTATTTACCTGTCAGCTTAGTC-CCGTTAAGCCCATTACCCTTATGGTGACT-TGTCAGCTCAG
**
570237 TCTCTAGTCAACCTTCATCC
64 TCTCCGGTCAACCTTCATCC
* * * * * * *
570257 ACTATTTACCTATCATCTCAGTCCTCGATAAGCTCATTACCCTTATGGTGACCTT-TCAGCTCAA
1 ATTATTTACCTGTCAGCTTAGTCC-CGTTAAGCCCATTACCCTTATGGTGA-CTTGTCAGCTCAG
** *
570321 TCTTTGGTCAACTTTCATCC
64 TCTCCGGTCAACCTTCATCC
* * * * * * * * * *
570341 ATTATTTACTTGTCAACTCAATCCCTGGTAAATCCC-TT-CTCTTTTTGGTGACTTATCAACTCA
1 ATTATTTACCTGTCAGCTTAGTCCC--GTTAAGCCCATTAC-CCTTATGGTGACTTGTCAGCTCA
* * *
570404 GTCTCTGGTCAACCTACATCT
63 GTCTCCGGTCAACCTTCATCC
* * * * * *
570425 ATTATTTACTTATCGGCTTAGTCCCAAG-TAAGCCCATTACCGTTATGGTGACTTATCAACTCAG
1 ATTATTTACCTGTCAGCTTAGTCCC--GTTAAGCCCATTACCCTTATGGTGACTTGTCAGCTCAG
* * *
570489 TCTCCGATCAAGCTTCAACC
64 TCTCCGGTCAACCTTCATCC
* ** * *
570509 ATTATTTACTTGTTGGCTTAGTCCCCGGTAAGCCCATTACCCTTATGGTGACTTGTTAGCTCAGT
1 ATTATTTACCTGTCAGCTTAGT-CCCGTTAAGCCCATTACCCTTATGGTGACTTGTCAGCTCAGT
* *
570574 CTCCGGTTAACCTTCATCT
65 CTCCGGTCAACCTTCATCC
* * * * * * * * *
570593 ATTATTTACCTATCGGCTTAGTCCCCGGTAA-ACCTTTTCTCTCCT-TGTTGA-TTGGTCACCTC
1 ATTATTTACCTGTCAGCTTAGT-CCCGTTAAGCCCATTAC-C-CTTATGGTGACTT-GTCAGCTC
* * *
570655 ATTCTTCGGTCAACCTTCTTCC
62 AGTCTCCGGTCAACCTTCATCC
* * * * *
570677 TTTATTTACCTGTCAACTGAGTCCC-TAGTAAGCCCATTACCCTTATGGTGACCTGTTAGCTCAG
1 ATTATTTACCTGTCAGCTTAGTCCCGT--TAAGCCCATTACCCTTATGGTGACTTGTCAGCTCAG
* *
570741 TCTCCTGTCAACCTTTATCC
64 TCTCCGGTCAACCTTCATCC
*
570761 ATTATTTACTTGTCAGCTTAGTCCC
1 ATTATTTACCTGTCAGCTTAGTCCC
570786 TGGTAAACCC
Statistics
Matches: 487, Mismatches: 104, Indels: 44
0.77 0.16 0.07
Matches are distributed among these distances:
83 27 0.06
84 441 0.91
85 18 0.04
86 1 0.00
ACGTcount: A:0.21, C:0.29, G:0.13, T:0.37
Consensus pattern (83 bp):
ATTATTTACCTGTCAGCTTAGTCCCGTTAAGCCCATTACCCTTATGGTGACTTGTCAGCTCAGTC
TCCGGTCAACCTTCATCC
Found at i:570549 original size:252 final size:251
Alignment explanation
Indices: 570134--570791 Score: 661
Period size: 252 Copynumber: 2.6 Consensus size: 251
570124 ATTACCCTTA
* * *
570134 TGGTGACTTGTCAGCTCAGTCTCCGGTCAACCTTCAT-TCATTATTTACCTGTCGGCTTAATCTC
1 TGGTGACTTGTCAACTCAGTCTCTGGTCAACCTTCATCT-ATTATTTACCTGTCGGCTTAGTC-C
* * *
570198 C-GTTAAGCCCATTACCCTTATGGTGA-TCTGTCAGCTTAGTCT-CTAGTCAACCTTCATCCACT
64 CAG-TAAGCCCATTACCCTTATGGTGACT-TGTCAGCTCAGTCTCCGA-TCAACCTTCATCCATT
* * * * * * *
570260 ATTTACCTATCATCTCAGTCCTCGATAAGCTCATTACCCTTATGGTGACCTT-TCAGCTCAATCT
126 ATTTACTTGTCAGCTTAGTCCCCGGTAAGCCCATTACCCTTATGGTGA-CTTGTCAGCTCAATCT
** * * * * **
570324 TTGGTCAACTTTCATCCATTATTTACTTGTCAACTCAATCCCTGGTAAATCC-CTTCTCTTTT
190 CCGGTCAACCTTCATCCATTATTTACCTATCAACTCAATCCCCGGTAAA-CCTCTTCTCTCCT
* * * *
570386 TGGTGACTTATCAACTCAGTCTCTGGTCAACCTACATCTATTATTTACTTATCGGCTTAGTCCCA
1 TGGTGACTTGTCAACTCAGTCTCTGGTCAACCTTCATCTATTATTTACCTGTCGGCTTAGTCCC-
* * * * *
570451 AGTAAGCCCATTACCGTTATGGTGACTTATCAACTCAGTCTCCGATCAAGCTTCAACCATTATTT
65 AGTAAGCCCATTACCCTTATGGTGACTTGTCAGCTCAGTCTCCGATCAACCTTCATCCATTATTT
** * *
570516 ACTTGTTGGCTTAGTCCCCGGTAAGCCCATTACCCTTATGGTGACTTGTTAGCTCAGTCTCCGGT
130 ACTTGTCAGCTTAGTCCCCGGTAAGCCCATTACCCTTATGGTGACTTGTCAGCTCAATCTCCGGT
* * ** * * *
570581 TAACCTTCATCTATTATTTACCTATCGGCTTAGTCCCCGGTAAACCTTTTCTCTCCT
195 CAACCTTCATCCATTATTTACCTATCAACTCAATCCCCGGTAAACCTCTTCTCTCCT
* * * * ** *
570638 TGTTGA-TTGGTCACCTCATTCT-TCGGTCAACCTTCTTCCT-TTATTTACCTGTCAACTGAGTC
1 TGGTGACTT-GTCAACTCAGTCTCT-GGTCAACCTTCAT-CTATTATTTACCTGTCGGCTTAGTC
* * *
570700 CCTAGTAAGCCCATTACCCTTATGGTGACCTGTTAGCTCAGTCTCCTG-TCAACCTTTATCCATT
63 CC-AGTAAGCCCATTACCCTTATGGTGACTTGTCAGCTCAGTCTCC-GATCAACCTTCATCCATT
*
570764 ATTTACTTGTCAGCTTAGTCCCTGGTAA
126 ATTTACTTGTCAGCTTAGTCCCCGGTAA
570792 ACCCTTTCTC
Statistics
Matches: 331, Mismatches: 64, Indels: 22
0.79 0.15 0.05
Matches are distributed among these distances:
251 10 0.03
252 313 0.95
253 8 0.02
ACGTcount: A:0.21, C:0.28, G:0.14, T:0.37
Consensus pattern (251 bp):
TGGTGACTTGTCAACTCAGTCTCTGGTCAACCTTCATCTATTATTTACCTGTCGGCTTAGTCCCA
GTAAGCCCATTACCCTTATGGTGACTTGTCAGCTCAGTCTCCGATCAACCTTCATCCATTATTTA
CTTGTCAGCTTAGTCCCCGGTAAGCCCATTACCCTTATGGTGACTTGTCAGCTCAATCTCCGGTC
AACCTTCATCCATTATTTACCTATCAACTCAATCCCCGGTAAACCTCTTCTCTCCT
Found at i:570580 original size:43 final size:43
Alignment explanation
Indices: 570452--570580 Score: 113
Period size: 43 Copynumber: 3.0 Consensus size: 43
570442 TTAGTCCCAA
* * * *
570452 GTAAGCCCATTACCGTTATGGTGACTTATCAACTCAGTCTCCG
1 GTAAGCCCATTACCATTATGGTGACTTGTTAGCTCAGTCTCCG
* * * * * *
570495 ATCAAGCTTCA--ACCATTAT--TTACTTGTTGGCTTAGTCCCCG
1 GT-AAGC-CCATTACCATTATGGTGACTTGTTAGCTCAGTCTCCG
*
570536 GTAAGCCCATTACCCTTATGGTGACTTGTTAGCTCAGTCTCCG
1 GTAAGCCCATTACCATTATGGTGACTTGTTAGCTCAGTCTCCG
570579 GT
1 GT
570581 TAACCTTCAT
Statistics
Matches: 63, Mismatches: 17, Indels: 12
0.68 0.18 0.13
Matches are distributed among these distances:
39 2 0.03
40 4 0.06
41 23 0.37
43 28 0.44
44 4 0.06
45 2 0.03
ACGTcount: A:0.21, C:0.27, G:0.19, T:0.33
Consensus pattern (43 bp):
GTAAGCCCATTACCATTATGGTGACTTGTTAGCTCAGTCTCCG
Found at i:571065 original size:94 final size:94
Alignment explanation
Indices: 570904--571081 Score: 284
Period size: 94 Copynumber: 1.9 Consensus size: 94
570894 TGACTTGTCA
* * *
570904 GTTTAATCTCGGTCAACTTTTTATCCTTCATTCACATGTCGGCTTGGTCCTAAGAACTTCCTTTT
1 GTTTAATCTCGGTCAACTTTTTATCCTTCATTCACATATCGGCTTAGTCCCAAGAACTTCCTTTT
570969 ATCTTTTGTTGACTTGTTGGTATTTATCG
66 ATCTTTTGTTGACTTGTTGGTATTTATCG
* * * *
570998 GTTTAATCTCGGTCAACTTTTTATCCTTCATTCACCTATTGGCTTAGTCCCAAGTACTTCTTTTT
1 GTTTAATCTCGGTCAACTTTTTATCCTTCATTCACATATCGGCTTAGTCCCAAGAACTTCCTTTT
*
571063 ATCTTTTTTTGACTTGTTG
66 ATCTTTTGTTGACTTGTTG
571082 ATCCAATCCC
Statistics
Matches: 76, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
94 76 1.00
ACGTcount: A:0.17, C:0.21, G:0.14, T:0.48
Consensus pattern (94 bp):
GTTTAATCTCGGTCAACTTTTTATCCTTCATTCACATATCGGCTTAGTCCCAAGAACTTCCTTTT
ATCTTTTGTTGACTTGTTGGTATTTATCG
Found at i:571308 original size:167 final size:168
Alignment explanation
Indices: 570998--571317 Score: 414
Period size: 167 Copynumber: 1.9 Consensus size: 168
570988 GTATTTATCG
* * *
570998 GTTTAATCTCGGTCAACTTTTTATCCTTCATTCACCTATTGGCTTAGTCCCAAGTACTTCTTTTT
1 GTTTAATCTCGATCAACTTTTTATCCTTCATTCACCTATGGGCTTAGTCCCAAGTACTTCCTTTT
* * * *
571063 ATCTTTTTTTGACTTGTTGATCCAATCCCGATCAACTTCTTTATCCTTTGTTTACCCATCAGCCT
66 ATATTTTATTAACTTGTAGATCCAATCCCGATCAACTTCTTTATCCTTTGTTTACCCATCAGCCT
*
571128 AGTCCCGAGTAAATCCTTTATCCCTCATTGACTTGTCA
131 AGTCCCAAGTAAATCCTTTATCCCTCATTGACTTGTCA
* * * **
571166 GTTTAATCTCGATCAACTTTTTATCCTTCATTCATC-GTGGGCTTGGTCTGGAA-TACTTCCTTT
1 GTTTAATCTCGATCAACTTTTTATCCTTCATTCACCTATGGGCTTAGTC-CCAAGTACTTCCTTT
* * * *
571229 TATATTTTATTAACTTGTCAG-TCTAATCTCGGTCAACTTCTTTATCCTTTGTTTACCTC-TCGG
65 TATATTTTATTAACTTGT-AGATCCAATCCCGATCAACTTCTTTATCCTTTGTTTACC-CATCAG
* *
571292 CTTAGTCCCAAGTAAATCTTTTATCC
128 CCTAGTCCCAAGTAAATCCTTTATCC
571318 ATTGTTGGCT
Statistics
Matches: 130, Mismatches: 19, Indels: 7
0.83 0.12 0.04
Matches are distributed among these distances:
167 92 0.71
168 38 0.29
ACGTcount: A:0.20, C:0.25, G:0.12, T:0.44
Consensus pattern (168 bp):
GTTTAATCTCGATCAACTTTTTATCCTTCATTCACCTATGGGCTTAGTCCCAAGTACTTCCTTTT
ATATTTTATTAACTTGTAGATCCAATCCCGATCAACTTCTTTATCCTTTGTTTACCCATCAGCCT
AGTCCCAAGTAAATCCTTTATCCCTCATTGACTTGTCA
Found at i:573929 original size:40 final size:40
Alignment explanation
Indices: 573885--573963 Score: 104
Period size: 40 Copynumber: 2.0 Consensus size: 40
573875 TAACTTCAAC
* * *
573885 AGCTGATGGTGGAGGAAGCAATAGCATCAAGAACAACAAT
1 AGCTGATGGAGGAAGAAGCAATAGCAGCAAGAACAACAAT
* * *
573925 AGCTGATGGAGGAAGAAGCTATAGCCGCAAGAGCAACAA
1 AGCTGATGGAGGAAGAAGCAATAGCAGCAAGAACAACAA
573964 CAACAGTAAG
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.42, C:0.16, G:0.29, T:0.13
Consensus pattern (40 bp):
AGCTGATGGAGGAAGAAGCAATAGCAGCAAGAACAACAAT
Found at i:577622 original size:147 final size:152
Alignment explanation
Indices: 577436--577782 Score: 327
Period size: 155 Copynumber: 2.3 Consensus size: 152
577426 CTTTAAGGTC
* *
577436 TACCATTGACTCAGAAGTGCCC-AGTGACC-CTACAA-GACTTAAAAAGGA-A-A-A-G-CGAAC
1 TACCTTTGACTTAGAAGTGCCCGA-T-ACCTCTA-AAGGACTTAAAAAGGATATAGAGGACGAAC
** * * *
577493 CTATGCCT-AATACGTACCCTCGGTATAGAAGT-GACCTGGTGACAAATTAGGCCTCGATTCTAG
63 CTAT-CCTAAATACCCACCCTCGGTATAAAAGTAGACCTGGTGACAAACTAGGACTCGATTCTA-
* *
577556 GAAAATTATGAAAATATCCCTATGGGA
126 GAAAATTACGAAAATATCCCTAAGGGA
* *
577583 TACCTTTGACTTAGAAGTGCCCGATACCTCTAAAGGACTTTAAAAGGATTATAGATGGAATGAAC
1 TACCTTTGACTTAGAAGTGCCCGATACCTCTAAAGGACTTAAAAAGGA-TATAGA-GG-ACGAAC
* * * * * *
577648 CTATCCTAAATACCCATCTTCGGTATAAAATTAGACCTGGTGATAACCTAGGACTCGATTTTAGA
63 CTATCCTAAATACCCACCCTCGGTATAAAAGTAGACCTGGTGACAAACTAGGACTCGATTCTAGA
* * *
577713 AAGTTACGAAAATGTCTCTAAGGGA
128 AAATTACGAAAATATCCCTAAGGGA
* * * * *
577738 TAGCTTCGACGTAGAAATGCTCGATACCTCTAAAGGACTTAAAAA
1 TACCTTTGACTTAGAAGTGCCCGATACCTCTAAAGGACTTAAAAA
577783 AAATTATAGA
Statistics
Matches: 161, Mismatches: 26, Indels: 18
0.79 0.13 0.09
Matches are distributed among these distances:
146 5 0.03
147 36 0.22
148 1 0.01
149 1 0.01
150 1 0.01
151 1 0.01
153 1 0.01
154 3 0.02
155 87 0.54
156 25 0.16
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.25
Consensus pattern (152 bp):
TACCTTTGACTTAGAAGTGCCCGATACCTCTAAAGGACTTAAAAAGGATATAGAGGACGAACCTA
TCCTAAATACCCACCCTCGGTATAAAAGTAGACCTGGTGACAAACTAGGACTCGATTCTAGAAAA
TTACGAAAATATCCCTAAGGGA
Found at i:577738 original size:155 final size:155
Alignment explanation
Indices: 577512--577792 Score: 366
Period size: 155 Copynumber: 1.8 Consensus size: 155
577502 ATACGTACCC
* * * *
577512 TCGGTATAGAAGTGACCTGGTGACAAATTAGGCCTCGATTCTAGGAAAATTATGAAAATATCCCT
1 TCGGTATAAAAGTGACCTGGTGACAAACTAGGACTCGATTCTAGGAAAATTACGAAAATATCCCT
* * * * * **
577577 ATGGGATACCTTTGACTTAGAAGTGCCCGATACCTCTAAAGGACTTTAAAAGGATTATAGATGGA
66 AAGGGATACCTTCGACGTAGAAATGCCCGATACCTCTAAAGGACTTAAAAAAAATTATAGATGGA
577642 ATGAACCTATCCTAAATACCCATCT
131 ATGAACCTATCCTAAATACCCATCT
* * * * * * *
577667 TCGGTATAAAATTAGACCTGGTGATAACCTAGGACTCGATTTTA-GAAAGTTACGAAAATGTCTC
1 TCGGTATAAAAGT-GACCTGGTGACAAACTAGGACTCGATTCTAGGAAAATTACGAAAATATCCC
* *
577731 TAAGGGATAGCTTCGACGTAGAAATGCTCGATACCTCTAAAGGACTTAAAAAAAATTATAGA
65 TAAGGGATACCTTCGACGTAGAAATGCCCGATACCTCTAAAGGACTTAAAAAAAATTATAGA
577793 ACATAGCCTA
Statistics
Matches: 105, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
155 80 0.76
156 25 0.24
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.27
Consensus pattern (155 bp):
TCGGTATAAAAGTGACCTGGTGACAAACTAGGACTCGATTCTAGGAAAATTACGAAAATATCCCT
AAGGGATACCTTCGACGTAGAAATGCCCGATACCTCTAAAGGACTTAAAAAAAATTATAGATGGA
ATGAACCTATCCTAAATACCCATCT
Found at i:579186 original size:36 final size:33
Alignment explanation
Indices: 579133--579225 Score: 100
Period size: 36 Copynumber: 2.8 Consensus size: 33
579123 CTAAGTGATT
*
579133 GAGAGGTTCTATTTTAGCCTTTGAAAAAGATAGG
1 GAGAGGTTCTATCTTAGCC-TTGAAAAAGATAGG
* *
579167 GAAAGAGGTTCTATCTTAGCCCGTG-AAAAGATATG
1 G--AGAGGTTCTATCTTAG-CCTTGAAAAAGATAGG
*
579202 GAG-GTTTCTATCTTAGCCTTGAAA
1 GAGAGGTTCTATCTTAGCCTTGAAA
579226 GATAGTGTTG
Statistics
Matches: 50, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
31 4 0.08
32 14 0.28
33 2 0.04
34 1 0.02
35 10 0.20
36 17 0.34
37 2 0.04
ACGTcount: A:0.31, C:0.13, G:0.25, T:0.31
Consensus pattern (33 bp):
GAGAGGTTCTATCTTAGCCTTGAAAAAGATAGG
Found at i:579673 original size:145 final size:140
Alignment explanation
Indices: 579478--579849 Score: 499
Period size: 145 Copynumber: 2.7 Consensus size: 140
579468 TTGAGCTAAC
579478 ATTTTTATTTAATTTTTAATTTTTGAAAAATTCATTTCGTACCTTAATGGAGAACCGAAAAGATA
1 ATTTTTATTTAATTTTTAA-TTTTGAAAAATTCATTTCGTACCTTAATGGAGAACCGAAAAGATA
* *
579543 TGAAAAGTTTTGAAAGTTTCTATACCCTTACGGAAAAAAACCATAGGAATATTATAAATCTTGAA
65 CGAAAAGTTTTGAAAGTTTCTATACCCTTAC---AAAAAACCATAGGAATATTAGAAATCTTGAA
*
579608 AAATTAAGGTAATA
127 AAATTAAGATAATA
* * *
579622 ATTTTTTATTTAATTTTTAATTTTCAAAAAATTCATTTCATACCTTAATGGAGAACTGAAAAGAT
1 A-TTTTTATTTAATTTTTAATTTT-GAAAAATTCATTTCGTACCTTAATGGAGAACCGAAAAGAT
* * * *
579687 ACGAAAAGTTTTGAAGGTTTATATGCCCTTACAAAAAATCATAGGAATATTAGAAATCTTGAAAA
64 ACGAAAAGTTTTGAAAGTTTCTATACCCTTACAAAAAACCATAGGAATATTAGAAATCTTGAAAA
579752 ATTAAGATAATA
129 ATTAAGATAATA
* * *
579764 ATTTTTATTTAA----T--TTTTGAAAAATTCATTTCGTACCATAATGAAGAACCAAAAAGATAC
1 ATTTTTATTTAATTTTTAATTTTGAAAAATTCATTTCGTACCTTAATGGAGAACCGAAAAGATAC
579823 GAAAAGTTTT--AAGTTTTTCTATACCCT
66 GAAAAGTTTTGAAAG--TTTCTATACCCT
579850 CATGGATACT
Statistics
Matches: 205, Mismatches: 19, Indels: 18
0.85 0.08 0.07
Matches are distributed among these distances:
132 2 0.01
134 56 0.27
135 4 0.02
137 1 0.00
141 11 0.05
142 43 0.21
144 5 0.02
145 83 0.40
ACGTcount: A:0.41, C:0.10, G:0.11, T:0.37
Consensus pattern (140 bp):
ATTTTTATTTAATTTTTAATTTTGAAAAATTCATTTCGTACCTTAATGGAGAACCGAAAAGATAC
GAAAAGTTTTGAAAGTTTCTATACCCTTACAAAAAACCATAGGAATATTAGAAATCTTGAAAAAT
TAAGATAATA
Found at i:579887 original size:134 final size:134
Alignment explanation
Indices: 579492--579877 Score: 443
Period size: 134 Copynumber: 2.8 Consensus size: 134
579482 TTATTTAATT
*
579492 TTTAATTTTTGAAAAATTCATTTCGTACCTTAATGGAGAACCGAAAAGATATGAAAAGTTTTGAA
1 TTTAATTTTTGAAAAATTCATTTCGTACCTTAATGGAGAACCGAAAAGATACGAAAAGTTTTG-A
* * *
579557 AGTTTCTATACCCTTACGGAAAAAAACCATAGGAATATTATAAATCTTGAAAAATTAAGGTAATA
65 AGTTTCTATACCCTTACGG-AAAATA--ATAGGAATATTAGAAATCTTGAAAAATTAAGATAATA
579622 ATTTTTTA
127 ATTTTTTA
* * *
579630 TTTAATTTTTAATTTTCAAAAAATTCATTTCATACCTTAATGGAGAACTGAAAAGATACGAAAAG
1 TTTAA----T--TTTT-GAAAAATTCATTTCGTACCTTAATGGAGAACCGAAAAGATACGAAAAG
* * ** *
579695 TTTTGAAGGTTTATATGCCCTTACAAAAAATCATAGGAATATTAGAAATCTTGAAAAATTAAGAT
59 TTTTGAA-GTTTCTATACCCTTACGGAAAATAATAGGAATATTAGAAATCTTGAAAAATTAAGAT
579760 AATAA-TTTTTA
123 AATAATTTTTTA
* * *
579771 TTTAATTTTTGAAAAATTCATTTCGTACCATAATGAAGAACCAAAAAGATACGAAAAGTTTT-AA
1 TTTAATTTTTGAAAAATTCATTTCGTACCTTAATGGAGAACCGAAAAGATACGAAAAGTTTTGAA
* * * * * *
579835 GTTTTTCTATACCCTCATGGATACTAATGGGAATAATAGAAAT
66 G--TTTCTATACCCTTACGGAAAATAATAGGAATATTAGAAAT
579878 ATATAAAAAT
Statistics
Matches: 209, Mismatches: 29, Indels: 24
0.80 0.11 0.09
Matches are distributed among these distances:
132 1 0.00
133 2 0.01
134 75 0.36
135 4 0.02
137 1 0.00
138 5 0.02
141 11 0.05
142 37 0.18
144 10 0.05
145 63 0.30
ACGTcount: A:0.42, C:0.10, G:0.12, T:0.35
Consensus pattern (134 bp):
TTTAATTTTTGAAAAATTCATTTCGTACCTTAATGGAGAACCGAAAAGATACGAAAAGTTTTGAA
GTTTCTATACCCTTACGGAAAATAATAGGAATATTAGAAATCTTGAAAAATTAAGATAATAATTT
TTTA
Found at i:580809 original size:21 final size:21
Alignment explanation
Indices: 580785--580833 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
580775 TCTAACTAAA
*
580785 TTTTCCTTTTTTCTTTCTTTT
1 TTTTCCTTTTTTCTCTCTTTT
*
580806 TTTTCTTTTTTTCTCTCTTTT
1 TTTTCCTTTTTTCTCTCTTTT
580827 TCTTTCC
1 T-TTTCC
580834 ACTTGCTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (21 bp):
TTTTCCTTTTTTCTCTCTTTT
Found at i:581956 original size:475 final size:475
Alignment explanation
Indices: 581248--582238 Score: 1399
Period size: 475 Copynumber: 2.1 Consensus size: 475
581238 TTTGGGTTTG
* * * * * *
581248 CAAGAAAGGGTTTT-TTTACCACCATTTTTTATAGAATCAAAGTTTGTATCTTAAATAAGACAAA
1 CAAGAAAAGCTTTTCTTT-CCATCATTTTTGATAGAATCAAAGTTTATATCTTAAATAAGAAAAA
* * * * * * * *
581312 CATGAATACTCATGCTAATCTCGATTCTTTTCAGGATTTGGCACCATAAACATAGTTTTCTCATT
65 CATGAACAATCATACTAATCTCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTCCTCATA
*
581377 AGGATACACGATATTGATGTTTGGTTTCACAAGAAAGTTATTTTCCCACCAATTTTTGTAAAGTC
130 AGGATACACGATATTGATGTTTGGTTTCACAAGAAAGTTATCTTCCCACCAATTTTTGTAAAGTC
* *
581442 TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGA-TCTTCATTCATTTTGTGATT
195 TAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAAT-ACTCTTAATTCATTTTGTGATT
* ** * *
581506 AGGCACTATAAACACATTCTTTTCATTAAGATAAATGATATTGATGGTTTTCTTTT-CTATGAAA
259 AGGCACTATAAACAAATTCTCCTCATTAAGATAAATGATACTGATGATTTTCTTTTGC-ATGAAA
*
581570 ATATT-TTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCAT-CTCTTAAATAAGACAAGCATCGA
323 ATATTCTT-TTTCCCTTATTTTCCTTAAAATCAAAGTTCATCCTC-TAAATAAGACAAGCATCGA
* * **
581633 TTC-TAGTAATAGTCTCCATTCT-TTTCAAGATTGGGAACCGAAAACACATCCCCTTTGTTAGGA
386 TTCTTA-TAAGAGTCTCCATTCTGTTTCAAGATTGGGAACCAAAAACACATCCCCTTCATTAGGA
*
581696 TACATGAAATTGATGCTTTGGTGTCG
450 TACATGAAATTGATGCTTTGGTGTCA
* * *
581722 TAAGAAAAGCTTTTCTTTCCATCATTTTTGATAAAATCAAAGTTTATCTCTTAAATAAGAAAAAC
1 CAAGAAAAGCTTTTCTTTCCATCATTTTTGATAGAATCAAAGTTTATATCTTAAATAAGAAAAAC
*
581787 ATGAACAATCATAC-AAT-TCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTCCTCATA
66 ATGAACAATCATACTAATCT-CCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTCCTCATA
* ** *
581850 AGGATACATGATATTGATGTTTTGGTTTTGCAAGATAGGCTT-TCTTCCCACCAATTTTTGTAAA
130 AGGATACACGATATTGATG-TTTGGTTTCACAAGA-AAG-TTATCTTCCCACCAATTTTTGTAAA
*
581914 GTCTAAGTTCATGCCTCAAATGAGGCAAACATGGATTCTAGTAATACTCTTAATTCATTTTGTGA
192 GTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATACTCTTAATTCATTTTGTGA
* *
581979 TTAGGCACTATAAACAAATTCTCCTCATTAGGATAAATGATACTGATGATTTTCTTTTGCATGGA
257 TTAGGCACTATAAACAAATTCTCCTCATTAAGATAAATGATACTGATGATTTTCTTTTGCATGAA
* *
582044 AATCTTCTTTTTCCCTTATTTTCCTTAAAATCAAAGTTCATCCTCTATATAAGACAAGCATCGAT
322 AATATTCTTTTTCCCTTATTTTCCTTAAAATCAAAGTTCATCCTCTAAATAAGACAAGCATCGAT
* * *
582109 TCTTATAAGAGTCTCCATTTTGTTTCAAGATTGGGAACCAAAAACACATTCTCTTCATTAGGATA
387 TCTTATAAGAGTCTCCATTCTGTTTCAAGATTGGGAACCAAAAACACATCCCCTTCATTAGGATA
*
582174 CATGACATTGATGCTTTGGTGTCA
452 CATGAAATTGATGCTTTGGTGTCA
**
582198 CAAGAAAAGCTTTTCTTTCCATTGTTTTTGATAGAATCAAA
1 CAAGAAAAGCTTTTCTTTCCATCATTTTTGATAGAATCAAA
582239 ATTCGTCCCT
Statistics
Matches: 457, Mismatches: 49, Indels: 20
0.87 0.09 0.04
Matches are distributed among these distances:
472 1 0.00
473 59 0.13
474 77 0.17
475 213 0.47
476 107 0.23
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (475 bp):
CAAGAAAAGCTTTTCTTTCCATCATTTTTGATAGAATCAAAGTTTATATCTTAAATAAGAAAAAC
ATGAACAATCATACTAATCTCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTCCTCATAA
GGATACACGATATTGATGTTTGGTTTCACAAGAAAGTTATCTTCCCACCAATTTTTGTAAAGTCT
AAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATACTCTTAATTCATTTTGTGATTAG
GCACTATAAACAAATTCTCCTCATTAAGATAAATGATACTGATGATTTTCTTTTGCATGAAAATA
TTCTTTTTCCCTTATTTTCCTTAAAATCAAAGTTCATCCTCTAAATAAGACAAGCATCGATTCTT
ATAAGAGTCTCCATTCTGTTTCAAGATTGGGAACCAAAAACACATCCCCTTCATTAGGATACATG
AAATTGATGCTTTGGTGTCA
Found at i:581981 original size:158 final size:159
Alignment explanation
Indices: 581346--582039 Score: 460
Period size: 159 Copynumber: 4.4 Consensus size: 159
581336 TTCTTTTCAG
* * * * * **
581346 GATTTGGCACCATAAACATAGTTTTCTCATTAGGATACACGATATTGATG-TTTGGTTTCACAAG
1 GATTAGGCACCATAAACACAGTCTCCTCATTAGGATACATGATATTGATGTTTTGGTTTTGCAAG
* * * * *
581410 A-AAG-TTATTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGC-CTCAAATGAGACAAACATG
66 ATAAGCTT-TCTTCCCACCAATTTTTGTAAAATCAAAGTTCAT-CTCTCAAATAAGACAAACATG
581472 GATTCTAGTAATGA-TCTTCATTCATTTT-GT
129 GATTCTAGTAAT-ACTCTTCATTCATTTTAGT
* * ** * * *
581502 GATTAGGCACTATAAACACATTCTTTTCATTAAGATAAATGATATTGATGGTTTT-CTTTT-CTA
1 GATTAGGCACCATAAACACAGTCTCCTCATTAGGATACATGATATTGAT-GTTTTGGTTTTGC-A
* * ** ** ** * *
581565 TGAAAATATTTTCTTTGC-CTTATTTTCCT-TAAAATCAAAGTTCATCTCTTAAATAAGACAAGC
64 AGATAA-GCTTTCTTCCCACCAATTTT--TGTAAAATCAAAGTTCATCTCTCAAATAAGACAAAC
* * * *
581628 ATCGATTCTAGTAATAGTCTCCATTC-TTTTCA-A
126 ATGGATTCTAGTAATACTCTTCATTCATTTT-AGT
* * * ** * * * * *
581661 GATTGGGAACCGA-AAACACA-TCCCCTTTGTTAGGATACATGAAATTGATGCTTTGGTGTCGTA
1 GATTAGGCACC-ATAAACACAGTCTCC-TCATTAGGATACATGATATTGATGTTTTGGTTTTGCA
* * * * * *
581724 AGAAAAGCTTTTCTTTCCATC-ATTTTTGATAAAATCAAAGTTTATCTCTTAAATAAGAAAAACA
64 AGATAAGC-TTTCTTCCCACCAATTTTTG-TAAAATCAAAGTTCATCTCTCAAATAAGACAAACA
* * * ** *
581788 T-GA-AC-AATCATACAATTCCCATTCTTTTTAG-
127 TGGATTCTAGTAATACTCTT--CATTCATTTTAGT
* *
581819 GATTAGGCACCATAAACATAGTCTCCTCATAAGGATACATGATATTGATGTTTTGGTTTTGCAAG
1 GATTAGGCACCATAAACACAGTCTCCTCATTAGGATACATGATATTGATGTTTTGGTTTTGCAAG
* * * * *
581884 ATAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC-CTCAAATGAGGCAAACATGG
66 ATAAGCTTTCTTCCCACCAATTTTTGTAAAATCAAAGTTCAT-CTCTCAAATAAGACAAACATGG
*
581948 ATTCTAGTAATACTCTTAATTCATTTT-GT
130 ATTCTAGTAATACTCTTCATTCATTTTAGT
* * * * * *
581977 GATTAGGCACTATAAACAAATTCTCCTCATTAGGATAAATGATACTGATGATTTT-CTTTTGCA
1 GATTAGGCACCATAAACACAGTCTCCTCATTAGGATACATGATATTGATG-TTTTGGTTTTGCA
582040 TGGAAATCTT
Statistics
Matches: 409, Mismatches: 96, Indels: 64
0.72 0.17 0.11
Matches are distributed among these distances:
156 47 0.11
157 48 0.12
158 150 0.37
159 152 0.37
160 12 0.03
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (159 bp):
GATTAGGCACCATAAACACAGTCTCCTCATTAGGATACATGATATTGATGTTTTGGTTTTGCAAG
ATAAGCTTTCTTCCCACCAATTTTTGTAAAATCAAAGTTCATCTCTCAAATAAGACAAACATGGA
TTCTAGTAATACTCTTCATTCATTTTAGT
Found at i:582065 original size:158 final size:158
Alignment explanation
Indices: 581428--582252 Score: 461
Period size: 159 Copynumber: 5.2 Consensus size: 158
581418 TTTCCCACCA
* * * *
581428 ATTTTTGTAAAGTCTAAGTTCGTGC-CTCAAATGAGACAAACATGGATTCTAGTAATGA-TCTTC
1 ATTTTTGTAAAATCAAAGTTCAT-CTCTCAAATAAGACAAACATGGATTCTAGTAAT-ACTCTTC
** *
581491 ATTCATTTT-GTGATTAGGCACTATAAACACATTCTTTTCATTAAGATAAATGATATTGATGGTT
64 ATTCATTTTAGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGAT-GTT
** *
581555 TTCTTTT-CTATGAAAATATTTTCTTTGCCTT
128 TTCTTTTGC-ATGAAAAGCTTTTCTTTCCCTT
* * * * *
581586 ATTTTCCT-TAAAATCAAAGTTCATCTCTTAAATAAGACAAGCATCGATTCTAGTAATAGTCTCC
1 ATTTT--TGTAAAATCAAAGTTCATCTCTCAAATAAGACAAACATGGATTCTAGTAATACTCTTC
* * * * * ** * *
581650 ATTC-TTTTCA-AGATTGGGAACCGA-AAACACA-TCCCCTTTGTTAGGATACATGAAATTGATG
64 ATTCATTTT-AGTGATTAGGCA-CTATAAACACATTCTCC-TCATTAGGATAAATGATATTGATG
** * * * * * *
581711 CTTTGGTGTCGTAAGAAAAGCTTTTCTTTCCATC
126 -TTTTCTTTTGCATGAAAAGCTTTTCTTTCCCTT
* * * * * * **
581745 ATTTTTGATAAAATCAAAGTTTATCTCTTAAATAAGAAAAACAT-GA-AC-AATCATACAATTCC
1 ATTTTTG-TAAAATCAAAGTTCATCTCTCAAATAAGACAAACATGGATTCTAGTAATACTCTT--
* * * * * *
581807 CATTCTTTTTAG-GATTAGGCACCATAAACATAGTCTCCTCATAAGGATACATGATATTGATGTT
63 CATTCATTTTAGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGTT
* * * * * **
581871 TTGGTTTTGCAAGATAGGC-TTTCTTCCCACCA
128 TT-CTTTTGCATGAAAAGCTTTTCTTTCC-CTT
* * * * *
581903 ATTTTTGTAAAGTCTAAGTTCATGC-CTCAAATGAGGCAAACATGGATTCTAGTAATACTCTTAA
1 ATTTTTGTAAAATCAAAGTTCAT-CTCTCAAATAAGACAAACATGGATTCTAGTAATACTCTTCA
* *
581967 TTCATTTT-GTGATTAGGCACTATAAACAAATTCTCCTCATTAGGATAAATGATACTGATGATTT
65 TTCATTTTAGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATG-TTT
* *
582031 TCTTTTGCATGGAAATCTTCTT-TTTCCCTT
129 TCTTTTGCATGAAAAGCTT-TTCTTTCCCTT
* * * * *
582061 ATTTTCCT-TAAAATCAAAGTTCATC-CTCTATATAAGACAAGCATCGATTCTTA-TAAGAGTCT
1 ATTTT--TGTAAAATCAAAGTTCATCTCTC-AAATAAGACAAACATGGATTC-TAGTAATACTCT
* * * * * * * * * *
582123 CCATT-TTGTTTCA-AGATTGGGAACCAAAAACACATTCTCTTCATTAGGATACATGACATTGAT
62 TCATTCAT-TTT-AGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGAT
** * ** * *
582186 GCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCATT
125 G-TTTTCTTTTGCATGAAAAGCTTTTCTTTCCCTT
* * * * *
582221 GTTTTTGATAGAATCAAAATTCGTCCCTCAAA
1 ATTTTTG-TAAAATCAAAGTTCATCTCTCAAA
582253 AGAGTCAACT
Statistics
Matches: 502, Mismatches: 126, Indels: 76
0.71 0.18 0.11
Matches are distributed among these distances:
156 6 0.01
157 43 0.09
158 150 0.30
159 202 0.40
160 98 0.20
161 3 0.01
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (158 bp):
ATTTTTGTAAAATCAAAGTTCATCTCTCAAATAAGACAAACATGGATTCTAGTAATACTCTTCAT
TCATTTTAGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGTTTTC
TTTTGCATGAAAAGCTTTTCTTTCCCTT
Found at i:585258 original size:469 final size:469
Alignment explanation
Indices: 584407--585557 Score: 1455
Period size: 469 Copynumber: 2.4 Consensus size: 469
584397 ACCATTGTTC
* * * ** *
584407 ATAGAATCAAAGTTTCTATCTTAAATAACACAAACATGAATACTTATGGTAATCCCCATTCTTTT
1 ATAGAATCAAAGTTTCTCTCTTAAATAACACAAACATGAATAGTCATACTAATTCCCATTCTTTT
* * * * *
584472 CAAGATTAGGGACCATAAACATAATCTTCTCATTAGGATACACGATTTGATGTTTTGGTTTCGAA
66 CAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGAT-----A-TTGATGCTTTGGTTTCGCA
** * *
584537 AGAAAGTCATTT-TTCTTACCAATTTTTGTAGAGTCTAAGTTCATGCCTTAAATGGGAC-AACAT
125 AGAAAGTC-TTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTTAAATGAGACAAACAT
* * *
584600 GGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAATAAATTCTCCTTATTACG
189 GGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTACAAACAAAATCTCCTTATTACG
*
584665 ATAAATGATATCGATAGTTTTCTTTTGCATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATC
254 ATAAATGATATCGATAGTTTTCTTTTGCATGAAAATCTTTTCTATACCCTATTTTCCTTAAAATC
** * * *
584730 AAAGTTCATCTTTTAAATAAGACAAGCATTGATTCCCGTAACAATCTCTATTCTTTTCAAGATTA
319 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCCCATAACAATCTCCATTCTTTTCAAGATTA
* * * * *
584795 GGAATCAAAAACACATTCCCTTCATTTGGATACACGACATTGATGCTATGGTGTCATAAGAAAA-
384 GGAACCAAAAACACATTCCCTTCATTAGGATACACGACATTAATGCTATGGTGTCACAAAAAAAT
* *
584859 GCTTTTCTTTTCACTATTTTTG
449 G-TTTTCATTCCACTATTTTTG
* * *
584881 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATTCCCATTCTTCT
1 ATAGAATCAAAGTTTCTCTCTTAAATAACACAAACATGAATAGTCATACTAATTCCCATTCTTTT
* *
584946 CAGGATTAGGCACCATAAACATAGTTTTCTCATTAGGATATTGATGCTTTGGTTTTGCAAGAAAG
66 CAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATATTGATGCTTTGGTTTCGCAAGAAAG
* ** * *
585011 TCTTTCTTCCCACCAATTTCTGTAAAGTCTAAGTTTGTACCTTAAATGAGACAAACATTGATTCT
131 TCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTTAAATGAGACAAACATGGATTCT
* * *
585076 AGTAATGATTTTCATTCATTTTGTGATTAGGCACTACAAACAAAATCTCTTTATTAGGATAAATG
196 AGTAATGATCTTCATTCATTTTGTGATTAGGCACTACAAACAAAATCTCCTTATTACGATAAATG
* * *
585141 ATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTATACCCTATTTTCCTTAAAATCAAAGTTC
261 ATATCGATAGTTTTCTTTTGCATGAAAATCTTTTCTATACCCTATTTTCCTTAAAATCAAAGTTC
* * * * *
585206 ATCCCTTAAATAAGATAAGCATCGATTCTCATAACAGTCTCCATTTTTTTCAAGATTAGGAACCT
326 ATCCCTTAAATAAGACAAGCATCGATTCCCATAACAATCTCCATTCTTTTCAAGATTAGGAACCA
* * * * *
585271 AAAACATATTCCTTTCATTAGGATACATGACATTAATGCTTTGGTGTCGCAAAAAAATGTTTTCA
391 AAAACACATTCCCTTCATTAGGATACACGACATTAATGCTATGGTGTCACAAAAAAATGTTTTCA
585336 TTCCACTATTTTTG
456 TTCCACTATTTTTG
* * * ** *
585350 ATAGAATAAAAGTTTCTCTCTTAAATAATACAAACATGAATAGTCAAACTAA-TCAGTATTTTTT
1 ATAGAATCAAAGTTTCTCTCTTAAATAACACAAACATGAATAGTCATACTAATTC-CCATTCTTT
* * * ** *
585414 TTAGGATTAGGCACCATAAACATAGTCTTCTCATAAAGATACACGACATTGACACTTTGGTTTCA
65 TCAGGATTAGGCACCATAAACATAGTCTTCTCAT-----T--AGGATATTGATGCTTTGGTTTCG
* * * * * *
585479 CAAAAAAGGCTTTCTTCCCATCAATTTTTGTAAAGTATAAGTTCATGCCTCAAATGCGACAAACA
123 CAAGAAAGTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTTAAATGAGACAAACA
585544 TGGATTCTAGTAAT
188 TGGATTCTAGTAAT
585558 TACCTTTATT
Statistics
Matches: 582, Mismatches: 84, Indels: 20
0.85 0.12 0.03
Matches are distributed among these distances:
467 3 0.01
468 64 0.11
469 337 0.58
470 1 0.00
474 92 0.16
476 85 0.15
ACGTcount: A:0.33, C:0.17, G:0.13, T:0.37
Consensus pattern (469 bp):
ATAGAATCAAAGTTTCTCTCTTAAATAACACAAACATGAATAGTCATACTAATTCCCATTCTTTT
CAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATATTGATGCTTTGGTTTCGCAAGAAAG
TCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTTAAATGAGACAAACATGGATTCT
AGTAATGATCTTCATTCATTTTGTGATTAGGCACTACAAACAAAATCTCCTTATTACGATAAATG
ATATCGATAGTTTTCTTTTGCATGAAAATCTTTTCTATACCCTATTTTCCTTAAAATCAAAGTTC
ATCCCTTAAATAAGACAAGCATCGATTCCCATAACAATCTCCATTCTTTTCAAGATTAGGAACCA
AAAACACATTCCCTTCATTAGGATACACGACATTAATGCTATGGTGTCACAAAAAAATGTTTTCA
TTCCACTATTTTTG
Found at i:587068 original size:21 final size:21
Alignment explanation
Indices: 587027--587070 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
587017 CTCCCCTTTA
* *
587027 TCTCCCCCATTTATTAATAAT
1 TCTCCCCCATTAATCAATAAT
587048 TCTCCCCC-TTAATCAAGTAAT
1 TCTCCCCCATTAATCAA-TAAT
587069 TC
1 TC
587071 ATATCAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.27, C:0.32, G:0.02, T:0.39
Consensus pattern (21 bp):
TCTCCCCCATTAATCAATAAT
Found at i:588883 original size:13 final size:13
Alignment explanation
Indices: 588865--588890 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
588855 ATAATCACCC
588865 TGTATCGATACAA
1 TGTATCGATACAA
588878 TGTATCGATACAA
1 TGTATCGATACAA
588891 AGAAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:590989 original size:15 final size:15
Alignment explanation
Indices: 590969--590999 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
590959 ATTTCGTTTG
*
590969 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
590984 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
590999 G
1 G
591000 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:595177 original size:21 final size:21
Alignment explanation
Indices: 595148--595192 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
595138 AAGTTTTCAT
*
595148 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
595168 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
595190 TTT
1 TTT
595193 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:597169 original size:13 final size:13
Alignment explanation
Indices: 597151--597176 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
597141 GAATTTTTTG
597151 TGTATCGATACAT
1 TGTATCGATACAT
597164 TGTATCGATACAT
1 TGTATCGATACAT
597177 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:598239 original size:159 final size:158
Alignment explanation
Indices: 597584--598334 Score: 448
Period size: 159 Copynumber: 4.7 Consensus size: 158
597574 TAGGCACTAT
** ** *
597584 AAACACATTCTCC-TCATTAGGATAAACGATATTGATGATTTTTTTTTGCATGGCAATCTTTCCT
1 AAACACATTCTCCTTCATTAGGATAAACGATATTGATGATTTGGTTTCACATGGAAATCTTTCCT
* * *
597648 TTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTTAATAAGACAAGCATCAATTCTCGCAATA
66 TTGCCCTATTTT-CTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCAATTCTTGCAATA
597713 GTCTCCATTCTTTTCAAGATTGAGAACCTA
130 GTCTCCATTCTTTTCAAGATT-AGAACCTA
* ** * * * *
597743 AAACACATTC-CCTTCATTAGGATACACGGCATTGATGCTTTGGTGTCACAT-GAAATGGTTT-T
1 AAACACATTCTCCTTCATTAGGATAAACGATATTGATGATTTGGTTTCACATGGAAAT-CTTTCC
* ** * * ** * * **
597805 TTTTCCACTATATTTGATAGAACCAAAGTTTGTCTCTTAAATAAGACAAACATGAA-TAGT-C-A
65 TTTGCC-CTAT-TTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCAATTCTTGCAA
* * * *
597867 TACTGATCCCCATTCTTTCCAGGATTAGGCACCGT-
128 TA--G-TCTCCATTCTTTTCAAGATTA-GAACC-TA
* * * * * * * *
597902 AAACATAGTCTTCTT-ATTAGGATAGAA-AATATTTATGCTTTGGTTTCACA-AGAAAGGCTTTC
1 AAACACATTCTCCTTCATTAGGATA-AACGATATTGATGATTTGGTTTCACATGGAAA-TCTTTC
* * * * * ** ** *
597964 C--T-CCCATCAATTTTTTGTAAAGT-ATAAGTTCGTGCCTCAAATGGGACAAACATGGATTCTA
64 CTTTGCCC-T--ATTTTCT-TAAAATCA-AAGTTCATCCCTTAAATAAGACAAACATCAATTCTT
* ** *
598025 GCAATTA-TCTTCATTCATTTT-GTGATTAG-GCACTA
124 GCAA-TAGTCTCCATTC-TTTTCAAGATTAGAAC-CTA
* ** ** *
598060 TAAACACATTCTCC-TCATTAGGATAAACGATACTGATGATTTTCTTTTGCATGGCAATCTTTCC
1 -AAACACATTCTCCTTCATTAGGATAAACGATATTGATGATTTGGTTTCACATGGAAATCTTTCC
* *
598124 TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTTAATAAGACAAGCATCAATTCTTGCAAT
65 TTTGCCCTATTTT-CTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCAATTCTTGCAAT
598189 AGTCTCCATTCTTTTCAAGATTGAGAACCTA
129 AGTCTCCATTCTTTTCAAGATT-AGAACCTA
* * * * * * ** *
598220 AAACACATTC-CCTTCATTAGGATACACGACATTGATGTTTTGGTGTCGCATGAAAAGGTTT-TT
1 AAACACATTCTCCTTCATTAGGATAAACGATATTGATGATTTGGTTTCACATGGAAATCTTTCCT
* * ** *
598283 TTTCCACTATTTT-TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
66 TTGCC-CTATTTTCT--TAAAATCAAAGTTCATCCCTTAAATAAGACAAACAT
598335 GAATAGTCAT
Statistics
Matches: 436, Mismatches: 113, Indels: 86
0.69 0.18 0.14
Matches are distributed among these distances:
156 4 0.01
157 7 0.02
158 37 0.08
159 356 0.82
160 22 0.05
161 4 0.01
162 4 0.01
163 2 0.00
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (158 bp):
AAACACATTCTCCTTCATTAGGATAAACGATATTGATGATTTGGTTTCACATGGAAATCTTTCCT
TTGCCCTATTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCAATTCTTGCAATAG
TCTCCATTCTTTTCAAGATTAGAACCTA
Found at i:598454 original size:477 final size:475
Alignment explanation
Indices: 597560--600024 Score: 2923
Period size: 477 Copynumber: 5.2 Consensus size: 475
597550 ATCCTAACAT
*
597560 ATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTGATGATTT
1 ATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTT
* * *
597625 TTTTTTGCATGGCAATCTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTTAATAA
66 TCTTTTGCATGGAAATCTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAA
* *
597690 GACAAGCATCAATTCTCGCAATAGTCTCCATTCTTTTCAAGATTGAGAACCTAAAACACATTCCC
131 GACAAGCATCAATTCTCGTAATAGTCTCTATTCTTTTCAAGATTGAGAACCTAAAACACATTCCC
* * * * * *
597755 TTCATTAGGATACACGGCATTGATGCTTTGGTGTCACATGAAATGGTTTTTTTTCCACTATATTT
196 TTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTTTTTCCACTATTTTT
* *
597820 GATAGAACCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTGATCCCCATTCTTT
261 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTT
* * * * *
597885 CCAGGATTAGGCACCGTAAACATAGTCTTCTTATTAGGATAGAAAATATTTATGCTTTGGTTTCA
326 TCAGGATTAGGCACCATAAACATAGTCTTCTTATTAGGATAGATAA-ATTGATGCTTTGGTTTTA
* * *
597950 CAAGAAAGGCTTTCCTCCCATCAATTTTTTGTAAAGTATAAGTTCGTGCCTCAAATGGGACAAAC
390 CAAGAAAGGCTTTCTTCCCATCAA-TTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAAC
* *
598015 ATGGATTCTAGCAATTATCTTC
454 ATGGATTCTAGTAATGATCTTC
* *
598037 ATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATACTGATGATTT
1 ATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTT
* *
598102 TCTTTTGCATGGCAATCTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTTAATAA
66 TCTTTTGCATGGAAATCTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAA
* * *
598167 GACAAGCATCAATTCTTGCAATAGTCTCCATTCTTTTCAAGATTGAGAACCTAAAACACATTCCC
131 GACAAGCATCAATTCTCGTAATAGTCTCTATTCTTTTCAAGATTGAGAACCTAAAACACATTCCC
* * *
598232 TTCATTAGGATACACGACATTGATGTTTTGGTGTCGCATGAAAAGGTTTTTTTTCCACTATTTTT
196 TTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTTTTTCCACTATTTTT
**
598297 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCTTATTCTTT
261 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTT
* * * * * * *
598362 TCAGGATTAGGCACCATAAGCATAGTTTTTTTTATTGGGATAGATAAATTGATACTTTAGTTTCA
326 TCAGGATTAGGCACCATAAACATAG-TCTTCTTATTAGGATAGATAAATTGATGCTTTGGTTTTA
* * * ** * *
598427 CAAGAAAGGCTTTCTTCCCATCAATTTTTATAAATTATAAGTTCGTGCCTTGAATAAGACAAACC
390 CAAGAAAGGCTTTCTTCCCATCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACA
* * *
598492 TAGATTCTAGCAATTATCTTC
455 TGGATTCTAGTAATGATCTTC
**
598513 ATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATACGGATGATTT
1 ATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTT
* *
598578 TCTTTTGCATGGTAAA-CTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATA
66 TCTTTTGCATGG-AAATCTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATA
* ** * *
598642 AGACAAGGATTGATTCTCGTAATAGTC-CTATTCTATTCAAGATTGGGAACC-AAGAACACATT-
130 AGACAAGCATCAATTCTCGTAATAGTCTCTATTCTTTTCAAGATTGAGAACCTAA-AACACATTC
** * * * * *
598704 TTTTTATTAGGATAGATGACATTGATGCTTTGGTGTTGCACGAAAAGGTTTTCTTTCCA-TCATT
194 CCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTTTTTCCACT-ATT
* * * * *
598768 TATGACAGAACCAAAGTTTGTCTCTTAAATAAGGCAAACATGAATAGTCATACTAATCGCCATTC
258 TTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTC
* * * * *
598833 TTTTCAGGATTGGGCACCATAAACATAGTTTTCTTGTTAGGATAGATGATACTGATGCTTTGGTT
323 TTTTCAGGATTAGGCACCATAAACATAGTCTTCTTATTAGGATAGAT-AAATTGATGCTTTGGTT
** * * * * *
598898 TTGTAACAAAGG-TCTTC-TCCCTTCCAACTTTTGTAAAGTCTAAGTTCATGCCTCAAATAAGAC
387 TTACAAGAAAGGCT-TTCTTCCCAT-CAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGAC
*
598961 AAACAT-GAAT-TAGTAATGATCTTC
450 AAACATGGATTCTAGTAATGATCTTC
* * * * * *
598985 ATTCA-TTTGTGATTAGGCACCATAAGCGCATTCTTCTTACTAGGATAAATGATATTGATGATTT
1 ATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTT
* * * * * * *
599049 TCTTTTGCATGAAAATCTTTTCTTTTCCTTATTTTCCTTAAAATAAAAATTCATCCCTTAAATAT
66 TCTTTTGCATGGAAATCTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAA
** * *
599114 GGTAAGCATCAATTCTCGTAACAGTCTCTATTCTTTTCAAGATTGGGAA--TAAAGAACACATTC
131 GACAAGCATCAATTCTCGTAATAGTCTCTATTCTTTTCAAGATTGAGAACCT-AA-AACACATTC
* * * * *
599177 CGTTCATTGGGATACATAACATTGATGCTTTAGTGTCTG-AAGAAAA-GTTTTTCTTTCCACCAT
194 CCTTCATTAGGATACATGACATTGATGCTTTGGTGTC-GCAAGAAAAGGTTTTT-TTTCCACTAT
* * * * *
599240 TTTTTATAGAATCAAAGTTTATCTCTTAAATAAGACAAGCATGAATAGTCATACTATTCCCTATT
257 TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATT
* * * * * ***
599305 -TATTT-AGGACTAGGCACTATAGACATAGTCTTCTCATAAGGATCCACGAT--ATTGACAATTT
322 CT-TTTCAGGATTAGGCACCATAAACATAGTCTTCTTATTAGGAT--A-GATAAATTGATGCTTT
* * * * *
599366 GGTTTTATAACACAGGCTTTCTT-CC-TGCTAATTTTTGTAAGGTCTAAGTTTGTGCCTCAAATG
383 GGTTTTACAAGAAAGGCTTTCTTCCCAT-C-AATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATG
* * *
599429 GGATAAACATGGATTCAAGTAATGATCTTC
446 AGACAAACATGGATTCTAGTAATGATCTTC
** * *
599459 ATTTTTTTTGTGATTAGGCACTATAAACACATTCTCTTTATTAGGATAAATGATATTGATGATTT
1 ATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTT
* * *
599524 GCTTTTGCATTGAAATCTTT-ATTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAA
66 TCTTTTGCATGGAAATCTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAA
* ** * * ***
599588 GGCAAGCATTGATTCTCGTAATAATCTCTATTCTTTTCAAGATTG-GAACCAAAAACACATTATT
131 GACAAGCATCAATTCTCGTAATAGTCTCTATTCTTTTCAAGATTGAGAACCTAAAACACATTCCC
* * * * * * *
599652 TTTATTAGGATACATGACATTGTTGCTTTGGTGTCACAAGAAAAGCTTTTCTTTT-AATTGTTTT
196 TTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTT-TTTTCCACTATTTT
* * *
599716 TGATAGAATCAAAGTTTGTCTCTTGAAATAAGCCAAACATGCATACTCATACTAATCCCCATTCT
260 TGATAGAATCAAAGTTTGTCTCTT-AAATAAGACAAACATGAATAGTCATACTAATCCCCATTCT
* * * * * * * * *
599781 TTTCAAGATTAGGCATCACACACTTAGTCTT-TTCATAAGGATACATGACATTGATGCTTTGATT
324 TTTCAGGATTAGGCACCATAAACATAGTCTTCTT-ATTAGGATAGAT-AAATTGATGCTTTGGTT
* * * * * * *
599845 TTGCAAGAAAAGCTTTCTTCACACCAATTTTTAG-AAAGTCTAAGTTCATGCCTCAAATGAAAAA
387 TTACAAGAAAGGCTTTCTTCCCATCAATTTTT-GTAAAGTCTAAGTTCGTGCCTCAAATGAGACA
599909 AACATGG-TT-TAGTAATGATCTTC
451 AACATGGATTCTAGTAATGATCTTC
* * *
599932 ATTCATTTTGTGATTAGGCACTATAAACACATTCTTCTCACTAGGATAAATTATATTGATGATTT
1 ATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTT
* * * *
599997 TCTTTTGCTTGAAAATTTTTTCTTTGCC
66 TCTTTTGCATGGAAATCTTTCCTTTGCC
600025 TGAAATTTTT
Statistics
Matches: 1709, Mismatches: 238, Indels: 85
0.84 0.12 0.04
Matches are distributed among these distances:
470 3 0.00
471 127 0.07
472 150 0.09
473 294 0.17
474 349 0.20
475 195 0.11
476 199 0.12
477 375 0.22
478 17 0.01
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.38
Consensus pattern (475 bp):
ATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTT
TCTTTTGCATGGAAATCTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAA
GACAAGCATCAATTCTCGTAATAGTCTCTATTCTTTTCAAGATTGAGAACCTAAAACACATTCCC
TTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTTTTTCCACTATTTTT
GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTT
TCAGGATTAGGCACCATAAACATAGTCTTCTTATTAGGATAGATAAATTGATGCTTTGGTTTTAC
AAGAAAGGCTTTCTTCCCATCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAT
GGATTCTAGTAATGATCTTC
Found at i:599747 original size:947 final size:944
Alignment explanation
Indices: 597560--600024 Score: 3087
Period size: 947 Copynumber: 2.6 Consensus size: 944
597550 ATCCTAACAT
*
597560 ATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATTGATGATTT
1 ATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTT
* * *
597625 TTTTTTGCATGGCAATCTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTTAATAA
66 TCTTTTGCATGGAAATCTTT-CTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAA
** * * * **
597690 GACAAGCATCAATTCTCGCAATAGTCTCCATTCTTTTCAAGATTGAGAACCTAAAACACATTCCC
130 GACAAGCATTGATTCTCGTAATAGTCTCTATTCTTTTCAAGATTG-GAACCAAAAACACATT-TT
* * * * * * *
597755 TTCATTAGGATACACGGCATTGATGCTTTGGTGTCACATGAAATGGTTTT-TTTTCCACTATATT
193 TTTATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGGTTTTCTTTT-CATTATTTT
*
597819 TGATAGAACCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTGATCCCCATTCTT
257 TGATAGAACCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTT
* * * ** * *
597884 TCCAGGATTAGGCACCGTAAACATAGTCTTCTTATTAGGATAGAAAATATTTATGCTTTGGTTTC
322 TTCAGGATTAGGCACCATAAACATAGTTTTCTTATTAGGATAGATGATATTGATGCTTTGGTTTT
* * * **
597949 ACAAGAAAGGCTTTCCTCCCAT-CAATTTTTTGTAAAGTATAAGTTCGTGCCTCAAATGGGACAA
387 GCAAGAAAGGCTTT-CTCCC-TCCAA-TTTTTGTAAAGTCTAAGTTCATGCCTCAAATAAGACAA
* * * *
598013 ACATGGATTCTAGCAATTATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCAT
449 ACAT-GATT-TAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCTCAC
* * ** *
598078 TAGGATAAACGATACTGATGATTTTCTTTTGCATGGCAATCTTTCCTTTGCCCTATTTTCCTTAA
512 TAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAA
* * * * *
598143 AATCAAAGTTCATCCCTTTAATAAGACAAGCATCAATTCTTGCAATAGTCTCCATTCTTTTCAAG
577 AATAAAAATTCATCCCTTAAATAAGACAAGCATCAATTCTCGCAACAGTCTCCATTCTTTTCAAG
* * * *
598208 ATTGAGAACCTAAAACACATTCCCTTCATTAGGATACACGACATTGATGTTTTGGTGTCGCATGA
642 ATTGAGAA-CTAAAACACATTCCCTTCATTAGGATACACAACATTGATGCTTTAGTGTCGCAAGA
* *
598273 AAAGGTTTTTTTTCCACTATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
706 AAAGGTTTTTTTTCCACCATTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAA
* * * * * **
598338 TAGTCATACTAATCCTTATTCTTTTCAGGATTAGGCACCATAAGCATAGTTTTTTTTATTGGGAT
771 TAGTCATACTAATCCCTATTCTTTTCAGGACTAGGCACCATAAGCATAGTTCTTCTCATAAGGAT
* * * *
598403 AGATAAATTGATACTTTAGTTTCACAAGAAAGGCTTTCTTCCCATCAATTTTTATAAATTATAAG
836 AGAT-AATTGACAATTTAGTTTCACAACAAAGGCTTTCTTCCCATCAATTTTTATAAAGTATAAG
** * * *
598468 TTCGTGCCTTGAATAAGACAAACCTAGATTCTAGCAATTATCTTC
900 TTCGTGCCTCAAATAAGACAAACATAGATTCAAGCAATGATCTTC
**
598513 ATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATACGGATGATTT
1 ATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTT
*
598578 TCTTTTGCATGGTAAA-CTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATA
66 TCTTTTGCATGG-AAATC-TTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATA
* * *
598642 AGACAAGGATTGATTCTCGTAATAGTC-CTATTCTATTCAAGATTGGGAACCAAGAACACATTTT
129 AGACAAGCATTGATTCTCGTAATAGTCTCTATTCTTTTCAAGATT-GGAACCAAAAACACATTTT
* ** * * * *
598706 TTTATTAGGATAGATGACATTGATGCTTTGGTGTTGCACGAAAAGGTTTTCTTTCCATCATTTAT
193 TTTATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGGTTTTCTTTTCATTATTTTT
* * *
598771 GACAGAACCAAAGTTTGTCTCTTAAATAAGGCAAACATGAATAGTCATACTAATCGCCATTCTTT
258 GATAGAACCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTT
* * *
598836 TCAGGATTGGGCACCATAAACATAGTTTTCTTGTTAGGATAGATGATACTGATGCTTTGGTTTTG
323 TCAGGATTAGGCACCATAAACATAGTTTTCTTATTAGGATAGATGATATTGATGCTTTGGTTTTG
* * *
598901 TAACAAAGG-TCTTCTCCCTTCCAACTTTTGTAAAGTCTAAGTTCATGCCTCAAATAAGACAAAC
388 CAAGAAAGGCT-TTCTCCC-TCCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATAAGACAAAC
* * * * *
598965 ATGAATTAGTAATGATCTTCATTCA-TTTGTGATTAGGCACCATAAGCGCATTCTTCTTACTAGG
451 ATGATTTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCTCACTAGG
* *
599029 ATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTTCCTTATTTTCCTTAAAATA
516 ATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATA
* ** * *
599094 AAAATTCATCCCTTAAATATGGTAAGCATCAATTCTCGTAACAGTCTCTATTCTTTTCAAGATTG
581 AAAATTCATCCCTTAAATAAGACAAGCATCAATTCTCGCAACAGTCTCCATTCTTTTCAAGATTG
* * * *
599159 GGAA-TAAAGAACACATTCCGTTCATTGGGATACATAACATTGATGCTTTAGTGTCTG-AAGAAA
646 AGAACT-AA-AACACATTCCCTTCATTAGGATACACAACATTGATGCTTTAGTGTC-GCAAGAAA
* *
599222 A-GTTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTATCTCTTAAATAAGACAAGCATGAAT
708 AGGTTTTT-TTTCCACCATTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAAT
* *
599286 AGTCATACTATTCCCTATT-TATTT-AGGACTAGGCACTAT-AGACATAG-TCTTCTCATAAGGA
772 AGTCATACTAATCCCTATTCT-TTTCAGGACTAGGCACCATAAG-CATAGTTCTTCTCATAAGGA
* * * * * *
599347 TCCACGAT-ATTGACAATTTGGTTTTATAACACAGGCTTTCTT-CC-TGCTAATTTTTGTAAGGT
835 T--A-GATAATTGACAATTTAGTTTCACAACAAAGGCTTTCTTCCCAT-C-AATTTTTATAAAGT
* * ** * * *
599409 CTAAGTTTGTGCCTCAAATGGGATAAACATGGATTCAAGTAATGATCTTC
895 ATAAGTTCGTGCCTCAAATAAGACAAACATAGATTCAAGCAATGATCTTC
** * *
599459 ATTTTTTTTGTGATTAGGCACTATAAACACATTCTCTTTATTAGGATAAATGATATTGATGATTT
1 ATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTT
* * *
599524 GCTTTTGCATTGAAATCTTTATTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAG
66 TCTTTTGCATGGAAATCTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAG
* *
599589 GCAAGCATTGATTCTCGTAATAATCTCTATTCTTTTCAAGATTGGAACCAAAAACACATTATTTT
131 ACAAGCATTGATTCTCGTAATAGTCTCTATTCTTTTCAAGATTGGAACCAAAAACACATT-TTTT
* * * *
599654 TATTAGGATACATGACATTGTTGCTTTGGTGTCACAAGAAAAGCTTTTCTTTTAATTGTTTTTGA
195 TATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGGTTTTCTTTTCATTATTTTTGA
* * * *
599719 TAGAATCAAAGTTTGTCTCTTGAAATAAGCCAAACATGCATACTCATACTAATCCCCATTCTTTT
260 TAGAACCAAAGTTTGTCTCTT-AAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTT
* * * * * * * * * *
599784 CAAGATTAGGCATCACACACTTAGTCTTT-TCATAAGGATACATGACATTGATGCTTTGATTTTG
324 CAGGATTAGGCACCATAAACATAGT-TTTCTTATTAGGATAGATGATATTGATGCTTTGGTTTTG
* * * *
599848 CAAGAAAAGCTTTCTTCACACCAATTTTTAG-AAAGTCTAAGTTCATGCCTCAAATGAA-AAAAA
388 CAAGAAAGGCTTTC-TCCCTCCAATTTTT-GTAAAGTCTAAGTTCATGCCTCAAAT-AAGACAAA
*
599911 CATGGTTTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCTCACTAG
450 CATGATTTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCTCACTAG
* * *
599976 GATAAATTATATTGATGATTTTCTTTTGCTTGAAAATTTTTTCTTTGCC
515 GATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCC
600025 TGAAATTTTT
Statistics
Matches: 1301, Mismatches: 184, Indels: 59
0.84 0.12 0.04
Matches are distributed among these distances:
944 1 0.00
945 103 0.08
946 266 0.20
947 423 0.33
948 110 0.08
949 3 0.00
950 44 0.03
951 175 0.13
952 32 0.02
953 139 0.11
954 5 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.38
Consensus pattern (944 bp):
ATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTT
TCTTTTGCATGGAAATCTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAG
ACAAGCATTGATTCTCGTAATAGTCTCTATTCTTTTCAAGATTGGAACCAAAAACACATTTTTTT
ATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGGTTTTCTTTTCATTATTTTTGAT
AGAACCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCA
GGATTAGGCACCATAAACATAGTTTTCTTATTAGGATAGATGATATTGATGCTTTGGTTTTGCAA
GAAAGGCTTTCTCCCTCCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATAAGACAAACATGAT
TTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCTCACTAGGATAAA
TGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATAAAAAT
TCATCCCTTAAATAAGACAAGCATCAATTCTCGCAACAGTCTCCATTCTTTTCAAGATTGAGAAC
TAAAACACATTCCCTTCATTAGGATACACAACATTGATGCTTTAGTGTCGCAAGAAAAGGTTTTT
TTTCCACCATTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATAGTCATACT
AATCCCTATTCTTTTCAGGACTAGGCACCATAAGCATAGTTCTTCTCATAAGGATAGATAATTGA
CAATTTAGTTTCACAACAAAGGCTTTCTTCCCATCAATTTTTATAAAGTATAAGTTCGTGCCTCA
AATAAGACAAACATAGATTCAAGCAATGATCTTC
Found at i:600022 original size:19 final size:18
Alignment explanation
Indices: 599994--600043 Score: 73
Period size: 18 Copynumber: 2.7 Consensus size: 18
599984 ATATTGATGA
*
599994 TTTTCTTTTGCTTGAAAATT
1 TTTTC-TTTGCCTG-AAATT
600014 TTTTCTTTGCCTGAAATT
1 TTTTCTTTGCCTGAAATT
600032 TTTTCTTTGCCT
1 TTTTCTTTGCCT
600044 TATTTTCTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
18 17 0.59
19 7 0.24
20 5 0.17
ACGTcount: A:0.14, C:0.16, G:0.10, T:0.60
Consensus pattern (18 bp):
TTTTCTTTGCCTGAAATT
Found at i:600965 original size:159 final size:158
Alignment explanation
Indices: 600327--601474 Score: 423
Period size: 159 Copynumber: 7.3 Consensus size: 158
600317 TAGGCACTAT
* * ** * *
600327 AAACACATTCTCCTCATTAGGATAAATGATACAGATGATTTTCATTT-GCATGGCAATCTTTTCT
1 AAACACATTCCCCTCATTAGGATAAATGATACTGATGA-TTTGGTTTCACATAGCAATCTTTTCT
* *
600391 TTGCCCT-ATTTTCCTTAAAATCAAAGTTCATCCCTT-AATAAGACAAGCATCGATTCTCA-TAA
65 TT-CCCTAATTTTTCTT-AAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCT-AGTAA
*
600453 CAATCTCCATTCTTTTCAAGATTGGGAACCAA
127 CAATCTCCATTCTTTTCAAGATTAGGAACCAA
* * ** * * * * * * ** ** *
600485 GAACACATTCCCTTTTTTAGGATACATGACATTGATGCTTTGGTGTCACACAAAAAGGTTTTATT
1 AAACACATTCCCCTCATTAGGATAAATGATACTGATGATTTGGTTTCACATAGCAATCTTTTCTT
* * * ** * ** * * *
600550 TACATCATTTTTGATAGAACCAAAGTTTGTCTCTTAAATATGACAAACAT-GA--ATAGTCATAC
66 TCCCTAATTTTTCTTA-AATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTAGT-A-AC
* *
600612 TAATC-CCTATTATTTTCAGGATTAGGAACC-A
128 -AATCTCC-ATTCTTTTCAAGATTAGGAACCAA
* * ** * * * * *
600643 CAA-ACAGTCTTCTTATTAGGATAGATGATATTGATGCTTTGGTTTCACAAAAG-ACA-C-TTTC
1 AAACACATTCCCCTCATTAGGATAAATGATACTGATGATTTGGTTTCAC-ATAGCA-ATCTTTTC
* * * * * * * *
600704 -TTCCACTAAATTTT-GTAAAGT-ATAAGTTTATGCCTCAAATGAGACAAACGTGGATTCTAGTA
64 TTTCC-CTAATTTTTCTTAAA-TCA-AAGTTCATCCCTTAAATAAGACAAACATCGATTCTAGTA
* * * ** * * *
600766 ATAATCTTCTTTCATTTT-GTGATTAGGCACTAT
126 ACAATCTCCATTC-TTTTCAAGATTAGGAACCAA
* ** ** *
600799 AAACACATTCCCCACATTAGGATAAATGATACTGATGATTTTTTTTTGCATGGCAATCTTTTCTT
1 AAACACATTCCCCTCATTAGGATAAATGATACTGATGATTTGGTTTCACATAGCAATCTTTTCTT
*
600864 TGCCCT-ATTTTTCTTACAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTAGTAACA
66 T-CCCTAATTTTTCTTA-AATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTAGTAACA
*
600928 ATCTCCATTCTTTTCAAGATTGGGAACCAA
129 ATCTCCATTCTTTTCAAGATTAGGAACCAA
* * * * ** * * * * **
600958 AAACACATTCACGTCATTAAGATACATGCCATTGATGTTTTGGTGTT-GCATAGAAAGGTTTTCT
1 AAACACATTCCCCTCATTAGGATAAATGATACTGATGATTTGGT-TTCACATAGCAATCTTTTCT
* ** * * * * *
601022 TTCCAC-CATTTTTGATAGAACCAAAGTTTATCTCTTAAATAAGACAAACGT-GA--ATAGTGAT
65 TTCC-CTAATTTTTCTTA-AATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTAGT-A-
* * * * *
601083 ACTAATCCCCATTCTTTTTAGGATTAGGCACCAT
126 AC-AATCTCCATTCTTTTCAAGATTAGGAACCAA
* ** * * * * * * * ** * *
601117 AAACATATT-TTCTTATTCGGATAGACGACATTGATGCTTTGGTTTCGTA-AGAAAAGC-TTTC-
1 AAACACATTCCCCTCATTAGGATAAATGATACTGATGATTTGGTTTCACATAG-CAATCTTTTCT
* * * * * * * * * *
601178 TTCCTACCAATTTTT-GTAGATTATAAGTTCGTGCCTCAAATTAGACAAACATTGATTCTTGTAA
65 TTCC--CTAATTTTTCTTAAATCA-AAGTTCATCCCTTAAATAAGACAAACATCGATTCTAGTAA
** * ** * * *
601242 TGATCTTCATTCATTTT-GTGATTAGGCACTAT
127 CAATCTCCATTC-TTTTCAAGATTAGGAACCAA
* * * * * * ** *
601274 AAATACATTCTCTTCTTTAGGATAAATGATACTAATGATTT-TTTTTGCATGGCAATCTTTTCTT
1 AAACACATTCCCCTCATTAGGATAAATGATACTGATGATTTGGTTTCACATAGCAATCTTTTCTT
* * * * * * * * * * *
601338 TGCCTTATTTTCCTTAAAATCAAAGTTTATCCCTTCAATAAGATAAGCATCGATTCTCGTTATAG
66 TCCCTAATTTTTCTT-AAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTAGTAACAA
* *
601403 TCTCCATTCTCTTCAAGATT-GGTACCAA
130 TCTCCATTCTTTTCAAGATTAGGAACCAA
* * * * * *
601431 GAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGT
1 AAACACATTCCCCTCATTAGGATAAATGATACTGATGATTTGGT
601475 GTCGCAAGAA
Statistics
Matches: 712, Mismatches: 225, Indels: 106
0.68 0.22 0.10
Matches are distributed among these distances:
154 3 0.00
155 42 0.06
156 34 0.05
157 198 0.28
158 206 0.29
159 219 0.31
160 10 0.01
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.37
Consensus pattern (158 bp):
AAACACATTCCCCTCATTAGGATAAATGATACTGATGATTTGGTTTCACATAGCAATCTTTTCTT
TCCCTAATTTTTCTTAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTAGTAACAAT
CTCCATTCTTTTCAAGATTAGGAACCAA
Found at i:602044 original size:472 final size:474
Alignment explanation
Indices: 600103--602554 Score: 3045
Period size: 472 Copynumber: 5.2 Consensus size: 474
600093 TCTTATAATA
* * * * *
600103 GTCTTTTAAGTAAGACAAATATAAATAGTCATACTACTCACC-ATTCTTTTCAGGATTAGGCACC
1 GTCTCTTAAATAAGACAAACATGAATAGTCATACTAATC-CCTATTCTTTTCAGGATTAGGCACC
* * ** *
600167 ATGAACATAGTCTTTTCATTAGGATACTTGATATTGATGCTTTGGTTTTGCAAGAAAGGCTCTCT
65 ATAAACATAGTCTTCTCATTAGGATAGATGATATTGATGCTTTGG-TTTGCAAGAAAGGCTTTCT
* * * * *
600232 TCTCTCCAATTTTTGTAAAATCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTGATG
129 TCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATG
* * * *
600297 AGCTTCACTCATTTTGGGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATACAGA
194 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATACTGA
* *
600362 TGATTTTCATTTGCATGGCAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTT
259 TGATTTT-TTTTGCATGGCAATCTTTTCTTTGCCCTATTTTTCTTAAAATCAAAGTTCATCCCTT
* *
600427 -AATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGAACCAAGAACAC
323 AAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGAGAACCAAGAACAC
* * * *
600491 ATTCCCTTTTTTAGGATACATGACATTGATGCTTTGGTGTCACACAAAAAGGTTTTATTTACATC
388 ATTCCCTTTATTAGGATACATGACATTGATGCTTTGGTGTCACAAAAAAAGGTTTTCTTTCCATC
*
600556 ATTTTTGATAGAACCAAAGTTT
453 ATTTTTGATAGAATCAAAGTTT
* * *
600578 GTCTCTTAAATATGACAAACATGAATAGTCATACTAATCCCTATTATTTTCAGGATTAGGAACCA
1 GTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCA
* * *
600643 CAAAC--AGTCTTCTTATTAGGATAGATGATATTGATGCTTTGGTTT-CACA-AAAGACACTTTC
66 TAAACATAGTCTTCTCATTAGGATAGATGATATTGATGCTTTGGTTTGCA-AGAAAG--GCTTTC
* * * ** *
600704 TT-CCACTAAATTTTGTAAAGTATAAGTTTATGCCTCAAATGAGACAAACGTGGATTCTAGTAAT
128 TTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAT
* * * *
600768 AATCTTCTTTCATTTTGTGATTAGGCACTATAAACACATTCCCCACATTAGGATAAATGATACTG
193 GATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATACTG
*
600833 ATGATTTTTTTTTGCATGGCAATCTTTTCTTTGCCCTATTTTTCTTACAATCAAAGTTCATCCCT
258 ATGA-TTTTTTTTGCATGGCAATCTTTTCTTTGCCCTATTTTTCTTAAAATCAAAGTTCATCCCT
* * *
600898 TAAATAAGACAAGCATCGATTCT-AGTAACAATCTCCATTCTTTTCAAGATTGGGAACCAAAAAC
322 TAAATAAGACAAGCATCGATTCTCA-TAACAGTCTCCATTCTTTTCAAGATTGAGAACCAAGAAC
* * * * * * ** * *
600962 ACATTCACGTCATTAAGATACATGCCATTGATGTTTTGGTGTTGCATAGAAAGGTTTTCTTTCCA
386 ACATTCCCTTTATTAGGATACATGACATTGATGCTTTGGTGTCACAAAAAAAGGTTTTCTTTCCA
* *
601027 CCATTTTTGATAGAACCAAAGTTT
451 TCATTTTTGATAGAATCAAAGTTT
* * * * *
601051 ATCTCTTAAATAAGACAAACGTGAATAGTGATACTAATCCCCATTCTTTTTAGGATTAGGCACCA
1 GTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCA
* * * * * * *
601116 TAAACATA-TTTTCTTATTCGGATAGACGACATTGATGCTTTGGTTTCGTAAGAAAAGCTTTCTT
66 TAAACATAGTCTTCTCATTAGGATAGATGATATTGATGCTTTGGTTT-GCAAGAAAGGCTTTCTT
* * * * * * *
601180 CCTACCAATTTTTGTAGATTATAAGTTCGTGCCTCAAATTAGACAAACATTGATTCTTGTAATGA
130 CCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGA
* * * *
601245 TCTTCATTCATTTTGTGATTAGGCACTATAAATACATTCTCTTCTTTAGGATAAATGATACTAAT
195 TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATACTGAT
* * * *
601310 GATTTTTTTTGCATGGCAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTATCCCTTCA
260 GATTTTTTTTGCATGGCAATCTTTTCTTTGCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAA
* * * * * *
601375 ATAAGATAAGCATCGATTCTCGTTATAGTCTCCATTCTCTTCAAGATTG-GTACCAAGAACACAT
325 ATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGAGAACCAAGAACACAT
* * * * *
601439 TCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCTATCGT
390 TCCCTTTATTAGGATACATGACATTGATGCTTTGGTGTCACAAAAAAAGGTTTTCTTTCCATCAT
*
601504 TTTTGGTAGAATCAAAGTTT
455 TTTTGATAGAATCAAAGTTT
* * * * *
601524 GTCTCTTAAATTAGACAAATATAAATAGTTATACTAATCGCC-ATTCTTTTCAGGGTTAGGCACC
1 GTCTCTTAAATAAGACAAACATGAATAGTCATACTAATC-CCTATTCTTTTCAGGATTAGGCACC
* * *
601588 ATGAACGTAGTCTTCTCATTAGGATAGATGAAATTGATGCTTTGGATTTGCAAGAAAGGCTTTCT
65 ATAAACATAGTCTTCTCATTAGGATAGATGATATTGATGCTTTGG-TTTGCAAGAAAGGCTTTCT
* * *
601653 TCCCACCAATTTTTGTAAAGTCTAGGTTCGTGCCTTAAATGAGACAAACATGGATTCTAGTACTG
129 TCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATG
* * * * * * * *
601718 ATCGTCATTTATTTTATGATTAAGCACTATAAACACATTCTCCTCTTTAGAAAAAATGATATTGA
194 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATACTGA
* * * * * * *
601783 TGA-TTATTTTGCATGGAAATCTTTTATTTTCCCTATTTTTCTTAAAATAAAAATTCATCCTTTA
259 TGATTTTTTTTGCATGGCAATCTTTTCTTTGCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTA
* * ** * **
601847 AATATGGCAAGCATTAATTCTCATAACAGTCTCCATT-GTTTCAAGA-TGAGAATGAAGAACACA
324 AATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGAGAACCAAGAACACA
* * * **
601910 TTCCCTTTATTAGGATACACGGCAATGATGCTTTGGTGTCACAAAAAAAACTTTTCTTTCCATCA
389 TTCCCTTTATTAGGATACATGACATTGATGCTTTGGTGTCACAAAAAAAGGTTTTCTTTCCATCA
*
601975 TTTTTGATAGAATGAAAGTTT
454 TTTTTGATAGAATCAAAGTTT
* * *
601996 TTTTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTATTCTTTACAGGATTAGGCACCA
1 GTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCA
* * * * * *
602061 TAAACATAGTCTTCTCATAAGGATACACGTTATTGACGCTTTGGTTTCGCAACG-ATGGCTTTCT
66 TAAACATAGTCTTCTCATTAGGATAGATGATATTGATGCTTTGGTTT-GCAA-GAAAGGCTTTCT
* *
602125 TCCTACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATAGATTCTAGTAATG
129 TCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATG
* * * *
602190 ATCTTCATTCATTTTGTGATAAGGCACTATAAACACGTTCTCCTCATTAGGGTAAATGATATTGA
194 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATACTGA
* * *
602255 TGATTTTCTTTTGCATGGAAATCTTGTCTTTGCCCTATTTTTCTTAAAATCAAAATTCATCCCTT
259 TGATTTT-TTTTGCATGGCAATCTTTTCTTTGCCCTATTTTTCTTAAAATCAAAGTTCATCCCTT
* * * * * * * *
602320 AAATATGACAAACATCAATTCTAATAATAGT-TCTTATTCTTTTTAAGATT-AGGAACTAAGAAC
323 AAATAAGACAAGCATCGATTCTCATAACAGTCTC-CATTCTTTTCAAGATTGA-GAACCAAGAAC
* * * * *
602383 ACAGTCCCTTTATTAGGATACATGACATTGATGCTTTGATGTCACAAGAAAAGGTTTTTTTTACA
386 ACATTCCCTTTATTAGGATACATGACATTGATGCTTTGGTGTCACAAAAAAAGGTTTTCTTTCCA
* *
602448 -CTGTTTTTGATAGAATTAAAGTTT
451 TC-ATTTTTGATAGAATCAAAGTTT
*
602472 GTCTCTTAAATAAGACAAATATGAATAGTCATACTAAT-CCTCATTCCTTTT-AGGATTAGGCAC
1 GTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCT-ATT-CTTTTCAGGATTAGGCAC
602535 CATAAACATAGTCTTCTCAT
64 CATAAACATAGTCTTCTCAT
602555 AAGTGTTTAG
Statistics
Matches: 1697, Mismatches: 250, Indels: 59
0.85 0.12 0.03
Matches are distributed among these distances:
471 13 0.01
472 486 0.29
473 466 0.27
474 383 0.23
475 186 0.11
476 159 0.09
477 4 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (474 bp):
GTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCA
TAAACATAGTCTTCTCATTAGGATAGATGATATTGATGCTTTGGTTTGCAAGAAAGGCTTTCTTC
CCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGAT
CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATACTGATG
ATTTTTTTTGCATGGCAATCTTTTCTTTGCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAA
TAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGAGAACCAAGAACACATT
CCCTTTATTAGGATACATGACATTGATGCTTTGGTGTCACAAAAAAAGGTTTTCTTTCCATCATT
TTTGATAGAATCAAAGTTT
Found at i:602988 original size:20 final size:20
Alignment explanation
Indices: 602962--603014 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 20
602952 GTAGCCAAAC
* *
602962 TTGTATCGATACAC-CAAAG
1 TTGTATCGATACACAAAAAA
602981 TATGTATCGATACACAAAAAA
1 T-TGTATCGATACACAAAAAA
603002 TTGTATCGATACA
1 TTGTATCGATACA
603015 TTGGCTTGTA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
19 1 0.03
20 25 0.83
21 4 0.13
ACGTcount: A:0.42, C:0.17, G:0.13, T:0.28
Consensus pattern (20 bp):
TTGTATCGATACACAAAAAA
Found at i:607083 original size:15 final size:15
Alignment explanation
Indices: 607063--607092 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
607053 AAAAATGTCT
*
607063 AAAATGAGGAAGCTC
1 AAAATGAAGAAGCTC
607078 AAAATGAAGAAGCTC
1 AAAATGAAGAAGCTC
607093 CAAACGAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.13, G:0.23, T:0.13
Consensus pattern (15 bp):
AAAATGAAGAAGCTC
Found at i:608550 original size:13 final size:13
Alignment explanation
Indices: 608532--608556 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
608522 TAGGTAGTTG
608532 TTGTGCACAAATA
1 TTGTGCACAAATA
608545 TTGTGCACAAAT
1 TTGTGCACAAAT
608557 GCTGTTAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TTGTGCACAAATA
Found at i:608767 original size:13 final size:13
Alignment explanation
Indices: 608749--608773 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
608739 CATTTTTCTT
608749 TGTATCGATACAA
1 TGTATCGATACAA
608762 TGTATCGATACA
1 TGTATCGATACA
608774 GGGGGATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:610647 original size:33 final size:33
Alignment explanation
Indices: 610589--610653 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
610579 TAGCCAAACT
*
610589 TGTATCGATACACCAAAGTAAGTATCGATACAA
1 TGTATCGATACACCAAAGAAAGTATCGATACAA
610622 TGTATCGATACA-CAAA-AAATTGTATCGATACA
1 TGTATCGATACACCAAAGAAA--GTATCGATACA
610654 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
31 2 0.07
32 4 0.14
33 23 0.79
ACGTcount: A:0.43, C:0.17, G:0.14, T:0.26
Consensus pattern (33 bp):
TGTATCGATACACCAAAGAAAGTATCGATACAA
Found at i:616245 original size:31 final size:32
Alignment explanation
Indices: 616197--616258 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 32
616187 AGCGATATAC
616197 TGTATCGATACAACACTTATGTATCGATACAT
1 TGTATCGATACAACACTTATGTATCGATACAT
616229 TGTATCGAT-CAACACTTATGTATCGATACA
1 TGTATCGATACAACACTTATGTATCGATACA
616259 ACACTTATGT
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 21 0.70
32 9 0.30
ACGTcount: A:0.34, C:0.19, G:0.13, T:0.34
Consensus pattern (32 bp):
TGTATCGATACAACACTTATGTATCGATACAT
Found at i:616292 original size:21 final size:19
Alignment explanation
Indices: 616197--616299 Score: 121
Period size: 19 Copynumber: 5.7 Consensus size: 19
616187 AGCGATATAC
616197 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
616216 TGTATCGAT---ACA--T-
1 TGTATCGATACAACACTTA
616229 TGTATCGAT-CAACACTTA
1 TGTATCGATACAACACTTA
616247 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
* *
616266 TGTATCGATACAATTACTGTT
1 TGTATCGATACAA-CACT-TA
616287 TGTATCGATACAA
1 TGTATCGATACAA
616300 ATTGTTGAAA
Statistics
Matches: 74, Mismatches: 2, Indels: 14
0.82 0.02 0.16
Matches are distributed among these distances:
13 9 0.12
14 1 0.01
15 3 0.04
16 3 0.04
17 1 0.01
18 9 0.12
19 31 0.42
20 3 0.04
21 14 0.19
ACGTcount: A:0.34, C:0.18, G:0.13, T:0.35
Consensus pattern (19 bp):
TGTATCGATACAACACTTA
Found at i:616709 original size:12 final size:12
Alignment explanation
Indices: 616692--616720 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
616682 CTTTAAAAAA
616692 TTGATTTTGATG
1 TTGATTTTGATG
616704 TTGATTTTGATG
1 TTGATTTTGATG
616716 TTGAT
1 TTGAT
616721 CCTGTATTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.17, C:0.00, G:0.24, T:0.59
Consensus pattern (12 bp):
TTGATTTTGATG
Found at i:616783 original size:51 final size:51
Alignment explanation
Indices: 616720--616822 Score: 188
Period size: 51 Copynumber: 2.0 Consensus size: 51
616710 TTGATGTTGA
* *
616720 TCCTGTATTTGGTGTTAATTGTTATTGTTATAATTGTTCTTAAATTTGATG
1 TCCTATATTTGGTGTTAATTGTTATTGTTATAATTGTTCTTAAATCTGATG
616771 TCCTATATTTGGTGTTAATTGTTATTGTTATAATTGTTCTTAAATCTGATG
1 TCCTATATTTGGTGTTAATTGTTATTGTTATAATTGTTCTTAAATCTGATG
616822 T
1 T
616823 TTATAAATGT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.22, C:0.07, G:0.17, T:0.54
Consensus pattern (51 bp):
TCCTATATTTGGTGTTAATTGTTATTGTTATAATTGTTCTTAAATCTGATG
Found at i:616826 original size:25 final size:26
Alignment explanation
Indices: 616747--616833 Score: 70
Period size: 25 Copynumber: 3.4 Consensus size: 26
616737 ATTGTTATTG
*
616747 TTATAATTGTTCTTAAATTTGATGTC
1 TTATAATTGTTCTTAAATCTGATGTC
* * * * * * * *
616773 CTATATTTGGTGTTAATTGTTAT-TG
1 TTATAATTGTTCTTAAATCTGATGTC
616798 TTATAATTGTTCTTAAATCTGATGT-
1 TTATAATTGTTCTTAAATCTGATGTC
*
616823 TTATAAATGTT
1 TTATAATTGTT
616834 TTGATTGAAT
Statistics
Matches: 44, Mismatches: 16, Indels: 3
0.70 0.25 0.05
Matches are distributed among these distances:
25 27 0.61
26 17 0.39
ACGTcount: A:0.26, C:0.06, G:0.14, T:0.54
Consensus pattern (26 bp):
TTATAATTGTTCTTAAATCTGATGTC
Found at i:618817 original size:26 final size:25
Alignment explanation
Indices: 618770--618820 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
618760 TTTAAAGGGG
618770 GGAGAAATAGAGAATTGTTATAAAA
1 GGAGAAATAGAGAATTGTTATAAAA
*
618795 GGAGAAATTGGAGAAATTG-TATAAAA
1 GGAGAAA-TAGAG-AATTGTTATAAAA
618821 TTGCTTTACT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 7 0.30
26 11 0.48
27 5 0.22
ACGTcount: A:0.51, C:0.00, G:0.25, T:0.24
Consensus pattern (25 bp):
GGAGAAATAGAGAATTGTTATAAAA
Found at i:622134 original size:474 final size:472
Alignment explanation
Indices: 621299--622273 Score: 1220
Period size: 473 Copynumber: 2.1 Consensus size: 472
621289 TTACCACCGT
* * *
621299 TTTTCATAGAATCAAAGTTTGTCTCTTAAATAAAAAAAACATGAATACTCATGCTAATCCCTATT
1 TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAAAAAAACATGAATACTCATACTAATCCCTATC
* *** * * * *
621364 CTTTTAAGGATTAGACACAATAAACATAGTTTTCTCTTTTTGATACATGATATTGATGTTTTGGT
66 CTTTTAAGGATTAGACACAATAAACATAGTTTTCTCATAAGGATACACGACATTGACGCTTTGGT
* ** * *
621429 TTCGTAAGGAAGGCATTTCCCATCAATTTTTGTAAACTCTAAGTTCGTGCCAAAAATGTGACAAA
131 TTCGCAACAAAGGCATTTCCCACCAATTTTTGTAAAATCTAAGTTCGTGCCAAAAA--TGACAAA
* * *
621494 ACATTATTCTAGTATTGATCTTCATTGACTTTGTGATTAGGCACTATAAACACATTCTCCTCATT
194 ACATTATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTACAAACACATTCTCCTCATT
*
621559 AGGATAAATGATATTGATGATTTTCTTTTCCAGAGAAATCTTTTCTTTGCCCTATTTTTCTTAAA
259 AGGATAAATGATATTGATGATTTTCTTTTCCAGAGAAATATTTTCTTTGCCCTATTTTTCTTAAA
* * * *
621624 ATAAAAATTCATCCCTTAAATATGGTAAGCATTGATTCTCGTAACAGTCTCCATTTTTTTTCAAG
324 ATAAAAATTCATCCCTTAAATACGATAAGCATTGATTCTCGTAACAGTCT-CAATTCTTTTCAAG
* * *
621689 ATTGGGAACCAAAAACACATTCCCTTTATTAGGATACATGACATTGATGCTT-TG-GCATCGCAA
388 ATTGAGAACCAAAAACACATT-CCTTCATTAGGATACATGACATTGATGCTTCGGTGC-T-GCAA
621752 GAAAAGCTTTTCTTTCCATC-GG
450 GAAAAGCTTTTCTTTCCATCAGG
* * * * **
621774 TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGATAAGCATTAATTGTCATACTAAT-CC-ATC
1 TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAAAAAAACATGAATACTCATACTAATCCCTATC
* * *
621837 CTTTTTAGGATTAGGCACCATAAACATAGTTTTCTCATAAGGATACACGACATTGACGCTTTGGT
66 CTTTTAAGGATTAGACACAATAAACATAGTTTTCTCATAAGGATACACGACATTGACGCTTTGGT
* * *
621902 TTTGCAACAAAGGC-TTTCTTCCTACCAATTTTTGTAAAATCTAAGTTTGTTCTTCAAACAA-GA
131 TTCGCAACAAAGGCATTTC--CC-ACCAATTTTTGTAAAATCTAAGTTCGTGC--CAAA-AATGA
* *
621965 C-AAAC-TTGGA-T-TAGTAATGATTTTCATTCATTTTTGTGATTAGGCACTACAAACACATTCT
190 CAAAACATT--ATTCTAGTAATGATCTTCATTCA-CTTTGTGATTAGGCACTACAAACACATTCT
**
622026 CCTCATTAGGATAAATGATATTGATGATTTTCTTTTGTATG-GAAATATTTTCTTTGCCCTA-TT
252 CCTCATTAGGATAAATGATATTGATGATTTTCTTTTCCA-GAGAAATATTTTCTTTGCCCTATTT
* * *
622089 TTCTTTAAAATAAAACTTTATCCCTTAAATACGATAAGCATTGATTCTTGTAACAGTCTCAATTC
316 TTC-TTAAAATAAAAATTCATCCCTTAAATACGATAAGCATTGATTCTCGTAACAGTCTCAATTC
* * *
622154 TTTTCAAGATTGAGAACCAAGAACATATTCCTTCATTAGGATACATGATATTGATGCTTCGGTGC
380 TTTTCAAGATTGAGAACCAAAAACACATTCCTTCATTAGGATACATGACATTGATGCTTCGGTGC
* **
622219 TGCAAGAAAAGGTTTTCTTTCCATCATT
445 TGCAAGAAAAGCTTTTCTTTCCATCAGG
* *
622247 TTTTGATAGAATCAATGTTTATCTCTT
1 TTTTGATAGAATCAAAGTTTGTCTCTT
622274 TGCATTGAAA
Statistics
Matches: 432, Mismatches: 54, Indels: 30
0.84 0.10 0.06
Matches are distributed among these distances:
472 55 0.13
473 146 0.34
474 145 0.34
475 80 0.19
477 4 0.01
478 2 0.00
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.39
Consensus pattern (472 bp):
TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAAAAAAACATGAATACTCATACTAATCCCTATC
CTTTTAAGGATTAGACACAATAAACATAGTTTTCTCATAAGGATACACGACATTGACGCTTTGGT
TTCGCAACAAAGGCATTTCCCACCAATTTTTGTAAAATCTAAGTTCGTGCCAAAAATGACAAAAC
ATTATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTACAAACACATTCTCCTCATTAG
GATAAATGATATTGATGATTTTCTTTTCCAGAGAAATATTTTCTTTGCCCTATTTTTCTTAAAAT
AAAAATTCATCCCTTAAATACGATAAGCATTGATTCTCGTAACAGTCTCAATTCTTTTCAAGATT
GAGAACCAAAAACACATTCCTTCATTAGGATACATGACATTGATGCTTCGGTGCTGCAAGAAAAG
CTTTTCTTTCCATCAGG
Found at i:622840 original size:20 final size:20
Alignment explanation
Indices: 622815--622865 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
622805 CCACTGTTTG
* *
622815 TATCGATACATGGTGCATTA
1 TATCGATACATGATGAATTA
*
622835 TATCGATACATGATGAATTG
1 TATCGATACATGATGAATTA
622855 TATCGATACAT
1 TATCGATACAT
622866 TGCTTTGTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35
Consensus pattern (20 bp):
TATCGATACATGATGAATTA
Found at i:630678 original size:24 final size:23
Alignment explanation
Indices: 630650--630714 Score: 67
Period size: 29 Copynumber: 2.5 Consensus size: 23
630640 GAGATATATA
630650 TTGCTTTGAAAAATAAAATAAATT
1 TTGCTTT-AAAAATAAAATAAATT
630674 TTGCTTTAAAAAGGGGGATAAAATAAATT
1 TTGCTTT-AAAA-----ATAAAATAAATT
630703 TTGCTTTAAAAA
1 TTGCTTTAAAAA
630715 GGGGAAGAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 11
0.74 0.02 0.23
Matches are distributed among these distances:
23 1 0.03
24 11 0.31
28 4 0.11
29 19 0.54
ACGTcount: A:0.46, C:0.05, G:0.14, T:0.35
Consensus pattern (23 bp):
TTGCTTTAAAAATAAAATAAATT
Found at i:630704 original size:29 final size:29
Alignment explanation
Indices: 630662--630718 Score: 114
Period size: 29 Copynumber: 2.0 Consensus size: 29
630652 GCTTTGAAAA
630662 ATAAAATAAATTTTGCTTTAAAAAGGGGG
1 ATAAAATAAATTTTGCTTTAAAAAGGGGG
630691 ATAAAATAAATTTTGCTTTAAAAAGGGG
1 ATAAAATAAATTTTGCTTTAAAAAGGGG
630719 AAGAAAATCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.46, C:0.04, G:0.19, T:0.32
Consensus pattern (29 bp):
ATAAAATAAATTTTGCTTTAAAAAGGGGG
Found at i:630725 original size:29 final size:29
Alignment explanation
Indices: 630664--630726 Score: 108
Period size: 29 Copynumber: 2.2 Consensus size: 29
630654 TTTGAAAAAT
* *
630664 AAAATAAATTTTGCTTTAAAAAGGGGGAT
1 AAAATAAATTTTGCTTTAAAAAGGGGAAG
630693 AAAATAAATTTTGCTTTAAAAAGGGGAAG
1 AAAATAAATTTTGCTTTAAAAAGGGGAAG
630722 AAAAT
1 AAAAT
630727 CTCGTTAACC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.49, C:0.03, G:0.19, T:0.29
Consensus pattern (29 bp):
AAAATAAATTTTGCTTTAAAAAGGGGAAG
Found at i:631341 original size:19 final size:19
Alignment explanation
Indices: 631298--631370 Score: 85
Period size: 20 Copynumber: 3.7 Consensus size: 19
631288 CACACCCCGA
*
631298 TGTATCGATACAT-TATGCTT
1 TGTATCGATACATGT-T-CAT
631318 TGTATCGATACATGTTCAT
1 TGTATCGATACATGTTCAT
**
631337 TGTATCGATACATGGACAAT
1 TGTATCGATACATGTTC-AT
631357 TGTATCGATACATG
1 TGTATCGATACATG
631371 AAACTGGCAG
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
19 17 0.35
20 30 0.62
21 1 0.02
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38
Consensus pattern (19 bp):
TGTATCGATACATGTTCAT
Found at i:633095 original size:476 final size:475
Alignment explanation
Indices: 632202--634050 Score: 2256
Period size: 476 Copynumber: 3.9 Consensus size: 475
632192 GAGCTTTCAA
*
632202 GATTCATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCCACCGATTTTGATAGAAT
1 GATTCATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAAT
* * * * *
632267 CAAAGTTTGTCTCTTAAATAAGGCAAACAAGAATAGTCACAATAATCCTCGTTCTTTTCAGGATT
66 CAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCTCATTCTTTTCAGGATT
* * * *
632332 AGGCACCATAAACATAGTCTTCTCATAACAATACACAATATTGATGATTTGGTTTCGCAAGAAAG
131 AGGCACCATAAACA-AGTCTTCTCATAAAAATACACAATATTGATGCTTTGGTTTCACAAGAAAA
* * * *
632397 GATTTCTTCCCACCAATTTTTGTACAGTCTAAGTTCGAGCCTCAAATGAGACAAAAATGGATTCT
195 GCTTTCTT-CCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCT
* * * * *
632462 AGTAATGATCTTCTTTCATTTTGTAATTAGGGACTATAAACACATT-TTCTTCATTACGATAAAT
259 AGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTCATTAGGATAAAT
* * *
632526 GATATTGATGATTTTCTTTTGAATGGAAATCTTTTCTTTACCCTGTTTTCCTTAAAATCAAAATT
324 GATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAATT
* * * *
632591 CAACCCTTAAATTTGACAAGCATCGATTCTCGTAACAATCTCCATTTATTTCAAGATTACGATCC
389 CATCCCTTAAATATGACAAGCATCGATTCTCGTAACAGTCTCCATTCATTTCAAGATTACGATCC
*
632656 AAGAACACATTCCCTTCCTTAG
454 AAGAACACATTCCCTTCATTAG
* * * * *
632678 GATTCATGACATTGATGCTTCGGTGTTGTAAGAAAAGTTTTTCTTTCCACCGTTTTTGGTGGAAT
1 GATTCATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAAT
* *
632743 CAAAGTTTGTTTATTAAATAAGACAAACATGAATAGTCATACTAATCC-CTATTCTTTTCAGGAT
66 CAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCTC-ATTCTTTTCAGGAT
* * *
632807 TAGGTACCATAAACACAGTCTTCTCTTAAAAATAGACAATATTGATGCTTTGGTTTCACAAGAAA
130 TAGGCACCATAAACA-AGTCTTCTCATAAAAATACACAATATTGATGCTTTGGTTTCACAAGAAA
* * * *
632872 AGCTTTCTTCACACCAATTTTTGTAAAGCCTAAGTTCCTGCCTCAAATGTGAC-AACATAGATTC
194 AGCTTTCTTC-CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTC
* * ** * * * *
632936 TAG-ATATAATTTTCACTTTTTTTTGTGATTAGGTAGTACAAACATATTCTCCTT-ATTAGGATA
258 TAGTA-ATGATCTTCA-TTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTCATTAGGATA
* * * * *
632999 AATGATTTTGATGATTTTCTTTTGCATGGAAATCTTTTCTCTACCCTCTTTTTCTTAAAATCAAA
321 AATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAA
* * * * * *
633064 ATTCATCCCATAGAA-ATGACAAGCTTCGATTCTCGTAACAGTCTGCATTCCTTCCAAGATT-GG
386 ATTCATCCCTTA-AATATGACAAGCATCGATTCTCGTAACAGTCTCCATTCATTTCAAGATTACG
*** *
633127 TAAAAAAGAACACATTCCCTTCATTGG
450 -ATCCAAGAACACATTCCCTTCATTAG
* * *
633154 GATGCATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT
1 GATTCATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAAT
* * * * * * *
633219 CTAAGTTTGTCTCTTAAATGAGACAAACATAAATACTTATACTAATCCTCATTCTTTCCAAGATT
66 CAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCTCATTCTTTTCAGGATT
* * ** * *
633284 AGGCACCATAAACATGGT-TCTCTTATAAGGATACACGATATTGATGCTTTGGCTTCACAAGAAA
131 AGGCACCATAAACA-AGTCT-TCTCATAAAAATACACAATATTGATGCTTTGGTTTCACAAGAAA
*
633348 GGCTTTCTTTCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTC
194 AGCTTTC-TTCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTC
*
633413 TAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT-CTTCATTAGAATAAA
258 TAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTCATTAGGATAAA
** * * * * * *
633477 TTTTATTGGTGATTTTTTTTTGCATGAAAATCTTTTCTTTGCCTTATTTTCCTCAAAATCTAAAT
323 TGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAAT
* * ** * *
633542 TCATCCTTTAAATAAGATGAGCATCGATTCTCGTAATAGTCTCCACTCATTTCAAGATTACGATC
388 TCATCCCTTAAATATGACAAGCATCGATTCTCGTAACAGTCTCCATTCATTTCAAGATTACGATC
* *
633607 CAAGAACACATTCCCTTCAATAA
453 CAAGAACACATTCCCTTCATTAG
* * *
633630 GATAT-ATGACATTGATGTTTTGGTATCGTAAGAAAAGCTTTTCTTTCCACCGTTTTGGATAGAA
1 GAT-TCATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAA
* * *
633694 TCAAAGTTTGTTTCTTAAATAAGATAAACATGAATAGTCATACTAATCC-CTATTCTTTACAGGA
65 TCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCTC-ATTCTTTTCAGGA
* * * * * * ** * **
633758 TTAGGCACAATAAACATGTCTTGTCATAAAGATAAACGATATTGGCGCCTTGGTTTCGTAA-AAA
129 TTAGGCACCATAAACAAGTCTTCTCATAAAAATACACAATATTGATGCTTTGGTTTCACAAGAAA
* * * * * * *
633822 AGGCTTTCTTCTCACTAATTTTTGTAAAGTCTAACTTCGTGCCTGAAATGAAAGAAGCATGTATT
194 A-GCTTTCTTC-CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATT
* * *
633887 CGAGTAATGATCTTCATTCATTTTGTGATTAAGCACTATAAACACATTCTCC-TCATTAGGAAAA
257 CTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTCATTAGGATAA
* * *
633951 ATGATAATGATGATTTTC---T-CATGAAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAA
322 ATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAA
* * *
634012 TTCATCACTTAAATATGACAAGCATCAATTCTCATAACA
387 TTCATCCCTTAAATATGACAAGCATCGATTCTCGTAACA
634051 CATTGATGCT
Statistics
Matches: 1165, Mismatches: 187, Indels: 47
0.83 0.13 0.03
Matches are distributed among these distances:
471 71 0.06
472 1 0.00
474 7 0.01
475 184 0.16
476 869 0.75
477 32 0.03
478 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (475 bp):
GATTCATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAAT
CAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCTCATTCTTTTCAGGATT
AGGCACCATAAACAAGTCTTCTCATAAAAATACACAATATTGATGCTTTGGTTTCACAAGAAAAG
CTTTCTTCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAG
TAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTCATTAGGATAAATGA
TATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAATTCA
TCCCTTAAATATGACAAGCATCGATTCTCGTAACAGTCTCCATTCATTTCAAGATTACGATCCAA
GAACACATTCCCTTCATTAG
Found at i:635732 original size:477 final size:476
Alignment explanation
Indices: 634050--640162 Score: 6764
Period size: 476 Copynumber: 12.9 Consensus size: 476
634040 TTCTCATAAC
* *
634050 ACATTGATGCTTTGGTGTCGCATGAAAAGTTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTT
1 ACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTT
* * * * * * *
634115 -TTCTCTTAATTAAGACAAACACGAATAGTCATATTAAACCCCATT-TTTTTAAGATTAGGCACC
66 GTT-TCTTAAATAAGACAAACATGAATAGTCATACTAATCCTCATTCTTTTCAGGATTAGGCACC
* * * * * * * ***
634178 CTGAACCTAGTCTTCTTATACGGATGCACGATATTGATGTTTTGGTTTTTTAAGAAAGGCTTTCT
130 ATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCT
* * * * * *
634243 TCCCACTAATTTTTGTAAGGTCTAAGTTTGTGCCTCAAAT--G--AAACAT--ATACTAGTAAGG
195 TTCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATG
* * *
634302 ATCTTCATTCATTTTGTGATTAAGCACTATAAACACATTCTTTTCATTAGGATAAATGATGTTGA
260 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCTTCATTAGGATAAATGATATTGA
* * * * * * *
634367 AGATTTTCTTTCGCATGTAAATATTTTCATTGCCCTATTTTTCTTAAAATCAAAATTCAACCC-T
325 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTT
* * * * * *
634431 AGAATATGACAAGCATCAATTGTCGTAACATTCTCCTTTTTTTTAAAGATTGGGATCCAAGAACA
390 A-AATATGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGATCCAAGAACA
* *
634496 CATACCTTTCATTAGGATACATG
454 CATTCCCTTCATTAGGATACATG
* * * * * * *
634519 AAATTGATGTTTTGGTGCCG-AAGGAAAAGCTTTTCTTTCCATC-GTTTCGAATAGATTCAAAGT
1 ACATTGATGCTTTGGTGTCGCAA-GAAAAGCTTTTCTTTCCACCATTTTTG-ATAGAATCAAAGT
* ** * * * * * * *
634582 TTGTCTCTTATGTAAAACAAACAAGAATTGTCAAACTAATCATCATTCTTTTCAAGAATAGGCAC
64 TTGTTTCTTAAATAAGACAAACATGAATAGTCATACTAATCCTCATTCTTTTCAGGATTAGGCAC
* * *** * * *
634647 CATAAACATAGTCTTCTCATAACGATATACGATATTGACATTTTGGCTTCACAAGAAAAGCTTT-
129 CATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTC
* * * *** **
634711 TTTCCCACTAATTTTTGTAAAGACAAAGTTCGCATCTCAAATGAGACAAATGTGGATTCTAGTAA
194 TTT-CCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAA
* * * * * *
634776 CGATCTTCATTCTTTTTATGATTAGGCATTATAAACAAATTCTTTTCATTAGGATAAATGATATT
258 TGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCTTCATTAGGATAAATGATATT
* *
634841 GATGATTTTCTTTTGCATGGAAATCATTTT-TTTGCCTTATTTTCCTTAAAATAAAAATTCATCC
323 GATGATTTTCTTTTGCATGGAAATC-TTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCC
* * * * * * * * *
634905 CGTAAAAATTACAAGCATCGATTCTTGTAACAATCTCTATTCTTTTCAAGATTGGAAACCGAGAA
387 CTTAAATATGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGATCCAAGAA
* * * * * *
634970 CATAATCCCTTTATTGGGATATATT
452 CACATTCCCTTCATTAGGATACATG
* * * * * * * * *
634995 ACTTTGATGTTTTGGTTTCAG-AAGGAAAGTTTTTCTTTCCATCGTTTTTAAGAGAATCAAAGTT
1 ACATTGATGCTTTGGTGTC-GCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTT
* * * * * * *
635059 TGTCTT-TTAAATATGACAAAAATGAATAGTTAGACAAATCCCCATTCTTTTCAAGATTAGGCAC
65 TGT-TTCTTAAATAAGACAAACATGAATAGTCATACTAATCCTCATTCTTTTCAGGATTAGGCAC
* * * *
635123 CATAAATATAATCTTCTCATAAGGATAGACAATATTGATGCTTTGGTTTCGCAAGAAAGGC-TTC
129 CATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTC
* * * *
635187 TTTCTAACCAATTTTTGTAAAGTCTAAGTTCGTACCTCCAATGAGAGAAACATGGATTCTAGTAA
194 TTTC-CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAA
* * * *
635252 TGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATACACTTTACTAGGATAAATGATATT
258 TGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCTTCATTAGGATAAATGATATT
* * * *
635317 GATGATTTCCTTTTGCATGGAAATATTTTCTTTGCCCTATTTTCCTTAAAATCAAACTTCAACCC
323 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCC
* * * * *
635382 TTAAACATGACAAGCATTGATTCTTGTAACAGTCTCCATTCGTTTCAAGATTGTGATCCAAGAAC
388 TTAAATATGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGATCCAAGAAC
635447 ACATTCCCTTCATTAGGATACATG
453 ACATTCCCTTCATTAGGATACATG
* * * * * *
635471 ACATTGATGCTTTGGTGTTGTAAGAAATGCTTTTCTTTTTCACTATTTTTGATAGAATGAAAGTT
1 ACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTC-TTTCCACCATTTTTGATAGAATCAAAGTT
*
635536 TGTTTCTTAAATAAGACAAACATGAATAGTCATACTAATCCTTATTCTTTTCAGGATTAGGCACC
65 TGTTTCTTAAATAAGACAAACATGAATAGTCATACTAATCCTCATTCTTTTCAGGATTAGGCACC
* ** * * * *
635601 ATAAACATAGTATTCTCATAAAAATACACGATATTGACGCTTTGCTTTTGCGAGAAAGGCTTTCT
130 ATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCT
* * * * *
635666 TTCCACTAATTTTTATAAAGTCTAAGTTCATGCCTTAAATGAGACAAAAATGGATTCTAGTAATG
195 TTCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATG
* *
635731 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTTTCTTCATTAGGATAAATGGTATTGA
260 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCTTCATTAGGATAAATGATATTGA
* * * * * *
635796 TGATTTTCTTTTACATGAAAATCTTTTCTCTGCCTTATTTTTCTTAAAATCAAAATTCATCCTTT
325 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTT
* * * * * *
635861 GAAA-ATGATAAGCCTCGATTCTCGTAACAGTCACCATTCTATCCAAGATTGGGAACCAAGAACA
390 -AAATATGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGATCCAAGAACA
* * *
635925 CATACCTTTCATTAGGATACATA
454 CATTCCCTTCATTAGGATACATG
* * * ** * *
635948 ACATTGATGCTTTGGTGTTGCAAGAAAAGTTTTTCTTCCCATTATTTTTGATTGATTCAAAGTTT
1 ACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTT
* ** * *
636013 GTCTCTTATGTAAGACACACATGAATAGTCATGCTAATCCTCATTCTTTTCAGGATTAGGCACCA
66 GTTTCTTAAATAAGACAAACATGAATAGTCATACTAATCCTCATTCTTTTCAGGATTAGGCACCA
** * **
636078 TAAACATAGTCTTCAT-ATAAGGATACACGATATTGACACTTTTGTTTCATAAGAAAGGCTTTCT
131 TAAACATAGTCTTC-TCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCT
* * *
636142 TTTCACCAATTTTTGTAAAGTCTAAGGTCGTCCCTCAAATGAGACAAACATGGATTCTAGTAATG
195 TTCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATG
* * * * *
636207 ATCTTCATTAATTTTGTGGTTAGGCACTACAAACACATTCTCTTCATTAGGACAAACTGATACTG
260 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCTTCATTAGGATAAA-TGATATTG
* * * * *
636272 ATGATTTTCATTCGCACGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCTAAATTCATCCCT
324 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCT
* * *
636337 TAAATATGACAAGCATTGATTCTCATAACAGTCTCCA--CATATTTCAAGATTGCGATCCAAGAA
389 TAAATATGACAAGCATCGATTCTCGTAACAGTCTCCATTC-T-TTTCAAGATTGGGATCCAAGAA
636400 CACATTCCCTTCATTAGGATACATG
452 CACATTCCCTTCATTAGGATACATG
* * * *
636425 GCATTGATGCTTTGGTGTCGTAAGAAAAACTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTT
1 ACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTT
* * *
636490 ATTTCTTAAATAAGACAAACATGAATAGTAATACTAAT-CTCCATTCTTTTTAGGATTAGGACAC
66 GTTTCTTAAATAAGACAAACATGAATAGTCATACTAATCCT-CATTCTTTTCAGGATTAGG-CAC
* * * * * *
636554 CATAAATATAGTCTTCTCATAAAGATACACGATTTTGATACTTTGGCTTCACAAGAAAAGG-TTT
129 CATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAG-AAAGGCTTT
* * * * * *
636618 CTTTGCACCAATTTTTGTAAAGTCTAACTTCATGCCCCAAATGAGATAAACATAGATTCTAGTAA
193 CTTTCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAA
*
636683 TGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGA-AAATGATAT
258 TGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCTTCATTA-GGATAAATGATAT
* * * *
636747 TGATGATTTTTTTTTTGGATGAAAATCTTTTCTTTGCCGTATTTTCCTTAAAATCAAAACTT-AT
322 TGATGA-TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAA-TTCAT
* *
636811 CCCTTAAATATGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAACCAAG
385 CCCTTAAATATGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGATCCAAG
*
636876 AACAAATTCCCTTCATTAGGATACATG
450 AACACATTCCCTTCATTAGGATACATG
* * * **
636903 GCATTGATGTTTTGGTGTCGCAAGAAAAGTTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTT
1 ACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTT
* * * * ** * * * * *
636968 ATTTGTTAAATAAAATAAATGTGAATCGTCATAGTAATCCCCATTTTTTTCAGGATTAGGCACCC
66 GTTTCTTAAATAAGACAAACATGAATAGTCATACTAATCCTCATTCTTTTCAGGATTAGGCACCA
* ** * ** * * * *
637033 TAAACATAGTCTTCTCATAAAGATACGTGCTATT-ACACTTTAGTTTTGTAAGAAAGGCATTCTT
131 TAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTT
* * * * *
637097 CCCACCAATTTTGGTAAAGTCTAAGTTTGTGCCTCGAATAAGACAAACATGGATTCTAGTAATGA
196 TCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGA
* * * * *
637162 TCTTCATTAATTTTGTGATTAGGCACTATAAACACATTCTGTTCTTTAGGATAAATGATGTTGAA
261 TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCTTCATTAGGATAAATGATATTGAT
* * * * *
637227 GATTTTCTTTTGCATAGAAATCCTTTT-TTCGCCTTATTTTCCTTAAAATCAAAATTCAACCCTA
326 GATTTTCTTTTGCATGGAAAT-CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTT
* * * * *
637291 AAATATGACAAGCAACGATTCTCGTAACATTCTCTATTCTTTTCAAGATTGGGATCTAGGAACAC
390 AAATATGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGATCCAAGAACAC
*
637356 ATTCCCTTTATTAGGATACATG
455 ATTCCCTTCATTAGGATACATG
** * * * * * *
637378 ATGTTGATGCTTTGGTGTTGCAAGAAAAACTTTTCTTTCCGCCGTTTTTGATAGATTC-AAGGTT
1 ACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTT
* ** * * * * *
637442 GTCTCTTATGTAAG-CTAAACTTGAATAGTCAAACTAATCCTTATTCTTTTTAGGATTAGGCACT
66 GTTTCTTAAATAAGAC-AAACATGAATAGTCATACTAATCCTCATTCTTTTCAGGATTAGGCACC
* * * * ** * * *
637506 ATAAACATAGTCTTCTTATAAGGATAGACGAAATTCATGCTTTGGTCCCACAAGAAAGG-TCGTA
130 ATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCT-TTC
* ** * * * *
637570 TTCCCATAAATTTTTGTATAGTCTATGTCCGTGCCTCAAATGAGACAAATATGGATTCTAGTAAT
194 TTTCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAT
* * **
637635 GATCTTCTTTCATTTTGTGATTAGGCACTATAAATGA-ATTCTCTTCATTAGGATAAATGGCATT
259 GATCTTCATTCATTTTGTGATTAGGCACTATAAA-CACATTCTCTTCATTAGGATAAATGATATT
* * *
637699 GATGATTTTCTTTTGCAGGGAAATCTTATT-TCTTGCCCTATTTTCCTTAAAATCAAAATTTAGC
323 GATGATTTTCTTTTGCATGGAAATCTT-TTCT-TTGCCCTATTTTCCTTAAAATCAAAATTCATC
* * * * * * * *
637763 CTTTAAATATGACAAGCATCGATTTTTGTGACAATCTCCATTCATTTCAATATTGCGATCCAAGA
386 CCTTAAATATGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGATCCAAGA
* * *
637828 ACATATTTCCTTTATTAGGATACATG
451 ACACATTCCCTTCATTAGGATACATG
* *** * * ** *
637854 ATATTGATGCTTTGGTGTTATAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAAAGAAACTTT
1 ACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTT
** * * *
637919 ACTTCTTAAATAAGAGAAACATGAATAGTCATACAAATCC-CTATTCTTTTCAGGATTATGCACC
66 GTTTCTTAAATAAGACAAACATGAATAGTCATACTAATCCTC-ATTCTTTTCAGGATTAGGCACC
** * * * * * *
637983 ATAAACATAGTCTTCTCATAAATATAAATGATTTTGATGCTTTGATTTCGCAAGGAAGGCATTCT
130 ATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCT
* * * * * * * *
638048 TCCCACCAGTTTTTGTAAAGTTTAAGTTGGTACCTCAAATAAGACAAAAATGAATTCTAGTAATG
195 TTCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATG
* * * *
638113 ATTTTCATTCATTTTGTGATTAGGCAGTATAAACACATTCTCTTAATTATGATAAATGATATTGA
260 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCTTCATTAGGATAAATGATATTGA
* * * * * * * *
638178 TGATTTTCTTTTACATGAAAATCTTTTCTCTACCCTATTTTTCTT-AAATTAAAATTCAACCTTT
325 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTT
* * * * * * ** *
638242 AAAAATGACATGCCTCGATTCTCGTAACAGTCTCTATTCTATCCAAGATTGGGAAGCAAGAACAT
390 AAATATGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGATCCAAGAACAC
* * *
638307 ATTTCCTTCATTAGGATGCACG
455 ATTCCCTTCATTAGGATACATG
* * * * *
638329 ACACTGATTCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTATTTTTGATACAATCCAAGTTT
1 ACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTT
* * * * * * *
638394 ATCTCTTAGATAAGACAAACATGAATAGTCATACCAATCCTCATTGTTTT-AGGATTAAGCAACA
66 GTTTCTTAAATAAGACAAACATGAATAGTCATACTAATCCTCATTCTTTTCAGGATTAGGCACCA
* * * ** *
638458 TAGACATAGTCTTCAT-GTGAGGATACACGATATTGACACTTTGCTTTCGCAAGAAAGGCTTTC-
131 TAAACATAGTCTTC-TCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCT
* * * * * *
638521 ATCTCACCAA-TTTTATAAGGTCTAAATTCGTGCCTCAAATGAGACAAAGATGGACTCTAGTAAT
195 TTC-CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAT
* * * *
638585 AATCTTCATTCATTTTGTGATTAGGCACCATAAACACATTCTCTTTATTAGGATAAACGATATTG
259 GATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCTTCATTAGGATAAATGATATTG
* * * * *
638650 ATGATTTTCTTTTGCATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCTACATTCATCCCC
324 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCT
* * * * *
638715 TAAATATGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGAAACCAATAAAA
389 TAAATATGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGATCCAAGAACA
638780 CATTCCCTTCATTAGGATACATG
454 CATTCCCTTCATTAGGATACATG
** * *
638803 ACATTGACACTTCGGTGTCGCAAGAAAAG-TTTTCTTTCCACCGA-TTTCGATAGAATCAAAGTT
1 ACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACC-ATTTTTGATAGAATCAAAGTT
* ** * * * **
638866 TGTCTCTTATGTAAGACAAACATGAATAGTTAAACTAATCCTCATTCATTTCA-GATTAGGCATT
65 TGTTTCTTAAATAAGACAAACATGAATAGTCATACTAATCCTCATTCTTTTCAGGATTAGGCACC
* * * ** *
638930 ATAAACATAGTCTTCTCATAAGGATAGACGATATTGATGCCTTGGTATCATAAGAAATGCTTTC-
130 ATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCT
* * * *
638994 TTCTCACCAATTTTTGTAAAGTCTAAATTCATGTCTCAAATGAGACAAAGATGGATTCTAGTAAT
195 TTC-CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAT
* * * * **
639059 AATCTTCATTCATTTTGCGATTAGGCACAATAAACACATTCTCTTTATTAGGATAAACAATATTG
259 GATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCTTCATTAGGATAAATGATATTG
* * * *
639124 ATGATTTT-TTTT-AATGGAAATC-TTTCTCTGCCCTATTTTTCTTAAAATCAAAATTCATCCTT
324 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCT
** * * * * * * *
639186 TAAATATGGGAAACATCAATTCTCGTAACAGTCTCAACTCATTTCAAAATTGCGATCCAAGAACA
389 TAAATATGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGATCCAAGAACA
* * *
639251 CATTCCCTTTATTAGGACATATG
454 CATTCCCTTCATTAGGATACATG
* * * * * **
639274 GCATTGATGCTTTGGTGTTGTAAGAAAAGCTTTTGTTTCCACCGTTTTTGATCA-AAGGAAAGTT
1 ACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGAT-AGAATCAAAGTT
*
639338 TGTTTCCTAAATAAGACAAACATGAATAGTCATACTAATCCAT-ATTCTTTTCAGGATTAGGCAC
65 TGTTTCTTAAATAAGACAAACATGAATAGTCATACTAATCC-TCATTCTTTTCAGGATTAGGCAC
* * * *
639402 TATAAACATAGTCTTCTCATAAGGATACACAATATTGATGCTTTGGTTTTGCAAGAAATGCTTT-
129 CATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTC
* * *
639466 TTTCCCACCAATTTTTGTAAAGCCTAAGTTCGTGCCTCAAATGAGATAAACGTGGATTCTAGTAA
194 TTT-CCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAA
* * * *
639531 TGATCTTCACTCATTTCGTGATTAGGCACTATAAACACATTCTCTTCATTAGGAAAAATGATGTT
258 TGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCTTCATTAGGATAAATGATATT
* * ** * *
639596 GAAGATTTTCTTTTGCATGGAAATCTTTTCATCACCCTATTTTCTTTAAAATCAAAATTCAACCC
323 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCC
* ** * * * * * *
639661 TGAAATACAACAAGCATCAATTCTTGTAACATTCTCCCTTCTTTTCAAGATCGAGATCCAAGAAC
388 TTAAATATGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGATCCAAGAAC
*
639726 ACATTCCCTTCATTAGGATATATG
453 ACATTCCCTTCATTAGGATACATG
* * *
639750 GCATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCATAGTTT
1 ACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTT
* ** * * * * * * *
639815 GTCTCTTACGTAAGACAAACATGAACAGTTAAACTAATCCTCATTCTTTTCCGAATTAGGTACAA
66 GTTTCTTAAATAAGACAAACATGAATAGTCATACTAATCCTCATTCTTTTCAGGATTAGGCACCA
* * * * *
639880 TAAACATAGTCTTCTGATAAGGATAGACGATATTGGTGCTTT-GTCAT-GATAAGAAAGGCTTTC
131 TAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGT-TTCG-CAAGAAAGGCTTTC
* *
639943 -TTCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCACAAATGAGACAAATATGGATTCTAGTAAT
194 TTTCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAT
* * * * * *
640007 GATGTTCTTTCATTTTGTGATTAGGCACCATAAACGCATTCTCTTCACTAGGAAAAATGATATTG
259 GATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCTTCATTAGGATAAATGATATTG
* * * * *
640072 ATGATTTTCTTTTACATGCAAATCTTATATTTGCCCTATTTTCCTTAAAATCAAAATTCAGCCCT
324 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCT
640137 TAAATATGACAAGCATCGATTCTCGT
389 TAAATATGACAAGCATCGATTCTCGT
640163 GACAACCCTC
Statistics
Matches: 4713, Mismatches: 853, Indels: 150
0.82 0.15 0.03
Matches are distributed among these distances:
468 5 0.00
469 83 0.02
470 96 0.02
471 127 0.03
472 80 0.02
473 474 0.10
474 388 0.08
475 721 0.15
476 1403 0.30
477 918 0.19
478 405 0.09
479 12 0.00
480 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.37
Consensus pattern (476 bp):
ACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTT
GTTTCTTAAATAAGACAAACATGAATAGTCATACTAATCCTCATTCTTTTCAGGATTAGGCACCA
TAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTT
TCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGA
TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCTTCATTAGGATAAATGATATTGAT
GATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTA
AATATGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGATCCAAGAACACA
TTCCCTTCATTAGGATACATG
Found at i:640523 original size:398 final size:398
Alignment explanation
Indices: 639775--640540 Score: 959
Period size: 398 Copynumber: 1.9 Consensus size: 398
639765 TGTCACAAGA
* *
639775 AAAGCTTTTCTTTCCACCATTTTTGATAGAATCATAGTTTGTCTCTTACGTAAGACAAACATGAA
1 AAAGCTTTTCTTTCCACCATTTTTGATAAAATCATAGTTTGTCTCTTACATAAGACAAACATGAA
* * * *
639840 CAGTTAAACTAATCCTCATTCTTTTCCGAATTAGGTACAATAAACATAGTCTTCTGATAAGGATA
66 CAGTTAAACCAATCCTCATTCTTTTCAGAATTAGGCACAATAAACATAGTCTTCTGAGAAGGATA
* *** * * * * *
639905 GACGATATTGGTGCTTTGTCATGATAAGAAAGGCTTTCTTCCACCAATTTTTGTAAAGTCTAAGT
131 CACGATATTGACACTTTGTCATCACAAGAAAGGCTTTCCTCCACAAATTTTTGTAAAGTCTAAAT
* * * * * *
639970 TCGTGCCACAAATGAGACAAATATGGATTCTAGTAATGATGTTCTTTCATTTTGTGATTAGGCAC
196 TCGTGCCACAAATGAGACAAAGATGGATTCTAGTAATAATCTTCATTCATTTTATGATTAAGCAC
* * * *
640035 CATAAACGCATTCTCTTCACTAGGAAAAATGATATTGATGATTTTCTTTTACATGCAAATCTTAT
261 CATAAACACATTCTCTTCACTAGGAAAAACGATATTGATGACTTTCTTTTACAAGCAAATCTTAT
** *
640100 ATTTGCCCTATTTTCCTTAAAATCAAAATTCAGCCCTTAAATATGACAAGCATCGATTCTCGTGA
326 ATGGGCCCTATTTTCCTTAAAATCAAAATTCAACCCTTAAATATGACAAGCATCGATTCTCGTGA
640165 CAACCCTC
391 CAACCCTC
* *
640173 AAAGGTTTTCTTTCCACCGTTTTTGATAAAATCCA-AGTTTGTCTCTTACATAAGACAAACATGA
1 AAAGCTTTTCTTTCCACCATTTTTGATAAAAT-CATAGTTTGTCTCTTACATAAGACAAACATGA
* * * * * * *
640237 ATAGTTATACCAA-CTGTCATTCTTTTGAGGATTAGGCACCATAGACATAGTCTTCAT-AGAAGG
65 ACAGTTAAACCAATC-CTCATTCTTTTCAGAATTAGGCACAATAAACATAGTCTTC-TGAGAAGG
* *
640300 ATACACTATATTGACACTTTGGT-TTCACAAGAAAGGCTTTCCTCTCACAAATTTTTGTAAAGTC
128 ATACACGATATTGACACTTT-GTCATCACAAGAAAGGCTTTCCTC-CACAAATTTTTGTAAAGTC
* * * *
640364 TAAATTCGTGCCTCGAATGAGACAAAGATGGATTGTAGTAATAATCTTCATTCGTTTTATGATTA
191 TAAATTCGTGCCACAAATGAGACAAAGATGGATTCTAGTAATAATCTTCATTCATTTTATGATTA
** * * *
640429 AGCATTATAAACACATTCTCTTTATTAGGATAAACGATA-TGATGACTTTCTTTTACACAG-AAA
256 AGCACCATAAACACATTCTCTTCACTAGGAAAAACGATATTGATGACTTTCTTTTACA-AGCAAA
* * ** *
640492 TCTTTTCTGGGCCCTATTTTTTTTTAAATCAAAATTCAACCCTTAAATA
320 TCTTATATGGGCCCTATTTTCCTTAAAATCAAAATTCAACCCTTAAATA
640541 AGACTTGCAT
Statistics
Matches: 309, Mismatches: 53, Indels: 12
0.83 0.14 0.03
Matches are distributed among these distances:
397 1 0.00
398 198 0.64
399 110 0.36
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (398 bp):
AAAGCTTTTCTTTCCACCATTTTTGATAAAATCATAGTTTGTCTCTTACATAAGACAAACATGAA
CAGTTAAACCAATCCTCATTCTTTTCAGAATTAGGCACAATAAACATAGTCTTCTGAGAAGGATA
CACGATATTGACACTTTGTCATCACAAGAAAGGCTTTCCTCCACAAATTTTTGTAAAGTCTAAAT
TCGTGCCACAAATGAGACAAAGATGGATTCTAGTAATAATCTTCATTCATTTTATGATTAAGCAC
CATAAACACATTCTCTTCACTAGGAAAAACGATATTGATGACTTTCTTTTACAAGCAAATCTTAT
ATGGGCCCTATTTTCCTTAAAATCAAAATTCAACCCTTAAATATGACAAGCATCGATTCTCGTGA
CAACCCTC
Found at i:640995 original size:873 final size:874
Alignment explanation
Indices: 639299--641035 Score: 2197
Period size: 873 Copynumber: 2.0 Consensus size: 874
639289 TGTTGTAAGA
* * * *
639299 AAAGCTTTTGTTTCCACCGTTTTTGATCAAAGGAAAGTTTGTTTCCTAAATAAGACAAACATGAA
1 AAAGCTTTTCTTTCCACCGTTTTTGATAAAAGCAAAGTTTGTCTCCTAAATAAGACAAACATGAA
* * *
639364 TAGTCATACTAATCCATATTCTTTTCAGGATTAGGCACTATAAACATAGTCTTCTCATAAGGATA
66 TAGTCATACCAATCCATATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAGAAGGATA
** ** * ** * *
639429 CACAATATTGATGCTTTGGTTTTGCAAGAAATGCTTTTTTCCCACCAATTTTTGTAAAGCCTAAG
131 CACAATATTGACACTTTGGTTTCACAAGAAAGGCTTTCCTCCCACAAATTTTTGTAAAGCCTAAA
* * * *
639494 TTCGTGCCTCAAATGAGATAAACGTGGATTCTAGTAATGATCTTCACTCATTTCGTGATTAGGCA
196 TTCGTGCCTCAAATGAGACAAACGTGGATTCTAGTAATAATCTTCACTCATTTCATGATTAAGCA
* * * * **
639559 CTATAAACACATTCTCTTCATTAGGAAAAATGATGTTGAAGATTTTCTTTTGCATGGAAATCTTT
261 CTATAAACACATTCTCTTCATTAGGAAAAACGATGATGAAGACTTTCTTTTACACAGAAATCTTT
639624 TCATCACCCTATTTTCTTTAAAATCAAAATTCAACCCTGAAATACAACAAGCATCAATTCTTGTA
326 TCATCACCCTATTTTCTTTAAAATCAAAATTCAACCCTGAAATACAACAAGCATCAATTCTTGTA
* * * *
639689 ACATTCTCCCTTCTTTTCAAGATCGAGATCCAAGAACACATTCCCTTCATTAGGATATATGGCAT
391 ACAGTCTCCATTCTTTTCAAGATCGAGATCCAAGAACACATTCCCTTCATTAGGATACATGACAT
639754 TGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCATAGTTTGTCT
456 TGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCATAGTTTGTCT
** * * *
639819 CTTACGTAAGACAAACATGAACAGTTAAACTAATCCTCATTCTTTTCCGAATTAGGTACAATAAA
521 CTTAAATAACACAAACATGAACAGTCAAACTAATCCCCATTCTTTTCCGAATTAGGTACAATAAA
* * * * *
639884 CATAGTCTTCTGATAAGGATAGACGATATTGGTGCTTTGTCATGATAAGAAAGGCTTTCTTCCAC
586 CATAGTCTTCTCATAACGATACACGATATTGATGCTTTGTCATGACAAGAAAGGCTTTCTTCCAC
* * * * *
639949 CAATTTTTGTAAAGTCTAAGTTCGTGCCACAAATGAGACAAATATGGATTCTAGTAATGATGTTC
651 CAATTTTTGTAAAGTCAAAGTTCGTGCCACAAATAAGAAAAACATGGAATCTAGTAATGATGTTC
* * * *
640014 TTTCATTTTGTGATTAGGCACCATAAACGCATTCTCTTCACTAGGAAAAATGATATTGATGATTT
716 ATTCATTTTGTGATTAGGCACCATAAACACATTCTCTTCACTAGGAAAAACGATATTGACGATTT
* * * *
640079 TCTTTTACATGCAAATCTTATATTTGCCCTATTTTCCTTAAAATCAAAATTCAGCCCTTAAATAT
781 TCTTTTACACGCAAATCTTATATGTGCCCTATTTTCCTTAAAATCAAAATTCAGCCCTTAAAAAC
640144 GACAAGCATCGATTCTCGTGACAACCCTC
846 GACAAGCATCGATTCTCGTGACAACCCTC
* * * * *
640173 AAAGGTTTTCTTTCCACCGTTTTTGATAAAATCCAAGTTTGTCTCTTACATAAGACAAACATGAA
1 AAAGCTTTTCTTTCCACCGTTTTTGATAAAAGCAAAGTTTGTCTCCTAAATAAGACAAACATGAA
* ** * *
640238 TAGTTATACCAA-CTGTCATTCTTTTGAGGATTAGGCACCATAGACATAGTCTTCAT-AGAAGGA
66 TAGTCATACCAATCCAT-ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTC-TCAGAAGGA
* * *
640301 TACACTATATTGACACTTTGGTTTCACAAGAAAGGCTTTCCTCTCACAAATTTTTGTAAAGTCTA
129 TACACAATATTGACACTTTGGTTTCACAAGAAAGGCTTTCCTCCCACAAATTTTTGTAAAGCCTA
* * * * *
640366 AATTCGTGCCTCGAATGAGACAAA-GATGGATTGTAGTAATAATCTTCATTCGTTTTATGATTAA
194 AATTCGTGCCTCAAATGAGACAAACG-TGGATTCTAGTAATAATCTTCACTCATTTCATGATTAA
* * * *
640430 GCATTATAAACACATTCTCTTTATTAGGATAAACGAT-ATGATGACTTTCTTTTACACAGAAATC
258 GCACTATAAACACATTCTCTTCATTAGGAAAAACGATGATGAAGACTTTCTTTTACACAGAAATC
** * * * ** *
640494 TTTTC-TGGGCCCTATTTTTTTTTAAATCAAAATTCAACCCTTAAATA-AGACTTGCATTGAA-T
323 TTTTCAT-CACCCTATTTTCTTTAAAATCAAAATTCAACCCTGAAATACA-ACAAGCA-TCAATT
* * * * * *
640556 CTTGTAATAGTCTCCATTCATTTT-AAGCTTGCGATCCAAGAACACATTCTCTTTATTAGGATAC
385 CTTGTAACAGTCTCCATTC-TTTTCAAGATCGAGATCCAAGAACACATTCCCTTCATTAGGATAC
* * **
640620 ATGACATTGATGCTTTGGTGTCGCAAGAAAAGTTTTTCTTTCCTA-TGTTTTTGATAGAATCCA-
449 ATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCC-ACCATTTTTGATAGAAT-CAT
* ** * * * * *
640683 AGTTTGTCTCTTAAATAACATAAATGTGAATAGTCATATTAATCCCCATTCTTTTCTGGATTAGG
512 AGTTTGTCTCTTAAATAACACAAACATGAACAGTCAAACTAATCCCCATTCTTTTCCGAATTAGG
* ** *
640748 TACCATAAACATAGTCTTCTCATAACGATACTTGATATTGATGCTTTAGT-TTCG-CAAGAAAGG
577 TACAATAAACATAGTCTTCTCATAACGATACACGATATTGATGCTTT-GTCAT-GACAAGAAAGG
*
640811 CTTTCTTCCCACCAATTTTTGTAAAGTCAAAGTTC-TGCCTCAAATAAGAAAAACATGGAATCTA
640 CTTTCTT-CCACCAATTTTTGTAAAGTCAAAGTTCGTGCCACAAATAAGAAAAACATGGAATCTA
* * * * * *
640875 GTAATGATTTTCATTCATTTTGTGATTATGCACTATAAACACATTCTCTTTATTAGGATAAACGA
704 GTAATGATGTTCATTCATTTTGTGATTAGGCACCATAAACACATTCTCTTCACTAGGAAAAACGA
* * * * *
640940 TATTGACGATTTTC-TTTAGCACGGAAATCTTTTCTGTGCCTTATTTTCTTTAAAATCAAAATTC
769 TATTGACGATTTTCTTTTA-CACGCAAATCTTATATGTGCCCTATTTTCCTTAAAATCAAAATTC
*
641004 ATCCCTTAAAAACGACAAGCATCGATTCTCGT
833 AGCCCTTAAAAACGACAAGCATCGATTCTCGT
641036 AACAGTCTCC
Statistics
Matches: 732, Mismatches: 118, Indels: 27
0.83 0.13 0.03
Matches are distributed among these distances:
872 6 0.01
873 441 0.60
874 284 0.39
875 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (874 bp):
AAAGCTTTTCTTTCCACCGTTTTTGATAAAAGCAAAGTTTGTCTCCTAAATAAGACAAACATGAA
TAGTCATACCAATCCATATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAGAAGGATA
CACAATATTGACACTTTGGTTTCACAAGAAAGGCTTTCCTCCCACAAATTTTTGTAAAGCCTAAA
TTCGTGCCTCAAATGAGACAAACGTGGATTCTAGTAATAATCTTCACTCATTTCATGATTAAGCA
CTATAAACACATTCTCTTCATTAGGAAAAACGATGATGAAGACTTTCTTTTACACAGAAATCTTT
TCATCACCCTATTTTCTTTAAAATCAAAATTCAACCCTGAAATACAACAAGCATCAATTCTTGTA
ACAGTCTCCATTCTTTTCAAGATCGAGATCCAAGAACACATTCCCTTCATTAGGATACATGACAT
TGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCATAGTTTGTCT
CTTAAATAACACAAACATGAACAGTCAAACTAATCCCCATTCTTTTCCGAATTAGGTACAATAAA
CATAGTCTTCTCATAACGATACACGATATTGATGCTTTGTCATGACAAGAAAGGCTTTCTTCCAC
CAATTTTTGTAAAGTCAAAGTTCGTGCCACAAATAAGAAAAACATGGAATCTAGTAATGATGTTC
ATTCATTTTGTGATTAGGCACCATAAACACATTCTCTTCACTAGGAAAAACGATATTGACGATTT
TCTTTTACACGCAAATCTTATATGTGCCCTATTTTCCTTAAAATCAAAATTCAGCCCTTAAAAAC
GACAAGCATCGATTCTCGTGACAACCCTC
Found at i:641069 original size:475 final size:476
Alignment explanation
Indices: 640173--647827 Score: 8370
Period size: 475 Copynumber: 16.1 Consensus size: 476
640163 GACAACCCTC
* * * *
640173 AAAGGTTTTCTTTCCACCGTTTTTGATAAAATCCAAGTTTGTCTCTTACATAAGACAAACATGAA
1 AAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
* * ** ** *
640238 TAGTTATACCAA-CTGTCATTCTTTTGAGGATTAGGCACCATAGACATAGTC-T-TCATAGAAGG
66 TAGTCATACTAATC-CCCATTCTTTTCTGGATTAGGCACCATAAACATAGTCTTCTCATA-AA-G
* ** * * * *
640300 ATACACTATATTGACACTTTGGTTTCACAAGAAAGGCTTTCCTCTCACAAATTTTTGTAAAGTCT
128 ATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCT
* * * * * * * *
640365 AAATTCGTGCCTCGAATGAGACAAAGATGGATTGTAGTAATAATCTTCATTCGTTTTATGATTAA
193 AAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAG
* * * * * **
640430 GCATTATAAACACATTCTCTTTATTAGGATAAACGATA-TGATGACTTTCTTTTACACAGAAATC
258 GCACTATAAACACATTCTCTTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATC
** ** * * * ** * * *
640494 TTTTCTGGGCCCTATTTTTTTTTAAATCAAAATTCAACCCTTAAATAAGACTTGCATTGAATCTT
323 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTC
* * * * * *
640559 GTAATAGTCTCCATTCATTTTAAGCTTGCGATCCAAGAACACATTCTCTTTATTAGGATACATGA
388 GTAACAGTCTCCATTCATTTCAAGATTGGGATCCAAGAACACATTCCCTTCATTAGGATACATGA
640624 CATTGATGCTTTGGTGTCGCAAGA
453 CATTGATGCTTTGGTGTCGCAAGA
* * * * * **
640648 AAAGTTTTTCTTTCCTA-TGTTTTTGATAGAATCCAAGTTTGTCTCTTAAATAACATAAATGTGA
1 AAAGCTTTTCTTTCC-ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGA
* * *
640712 ATAGTCATATTAATCCCCATTCTTTTCTGGATTAGGTACCATAAACATAGTCTTCTCATAACGAT
65 ATAGTCATACTAATCCCCATTCTTTTCTGGATTAGGCACCATAAACATAGTCTTCTCATAAAGAT
** * *
640777 ACTTGATATTGATGCTTTAGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCAAA
130 ACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAA
* * * * *
640842 GTTC-TGCCTCAAATAAGAAAAACATGGAATCTAGTAATGATTTTCATTCATTTTGTGATTATGC
195 GTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGC
* * * * *
640906 ACTATAAACACATTCTCTTTATTAGGATAAACGATATTGACGATTTTCTTTAGCACGGAAATCTT
260 ACTATAAACACATTCTCTTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTT
* * * * *
640971 TTCTGTGCCTTATTTTCTTTAAAATCAAAATTCATCCCTTAAAAACGACAAGCATCGATTCTCGT
325 TTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGT
** *
641036 AACAGTCTCCACCCATTTCAAGATTGTGATCCAAGAACACATTCCCTTCATTAGGATACATGACA
390 AACAGTCTCCATTCATTTCAAGATTGGGATCCAAGAACACATTCCCTTCATTAGGATACATGACA
*
641101 TTGATGCTTTAGG-GTTGCAAGA
455 TTGATGCTTT-GGTGTCGCAAGA
* * * * * * *
641123 AAAGCATTTATTTCTACCATTTTTGATAGAATCAAAGTTTGTTTTTTAAATAAGACAAACATAAA
1 AAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
* * * *
641188 TAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACGTAGTCTTCTTATAAGGATA
66 TAGTCATACTAATCCCCATTCTTTTCTGGATTAGGCACCATAAACATAGTCTTCTCATAAAGATA
* ** * *
641253 GACGATATTGATGCTTTGGCATCACAAGAAAAGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAG
131 CACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAG
* * *
641318 TTCGTGCCTCAAATAAGGCAATAGATATTGATGATTTGCTTTCTTCACATGGATTCTAGCAACGA
196 TTCGTGCCTCAAAT---G----AG--A--CA--A------------ACATGGATTCTAGTAATGA
* * * * * * *
641383 ACTTCTTTAATTTTGTGATTTGGCACTATAAACACGTGCTCCTCATTAGGAT-AATAGATATTGA
236 TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCTTCATTAGGATAAAT-GATATTGA
* * * * * *
641447 TGATTTGCTTTTGCATGGAAATATTATCTTTACCCTATTTTTCTTAAAATCAAAATTCAGCCCTT
300 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTT
* * * * * * *
641512 AAATACGACATGCATGGATTCTTGTAACAGTCTCCAATCATTTCAAGATTGCGATCCAAGAACGC
365 AAATATGACAAGCATCGATTCTCGTAACAGTCTCCATTCATTTCAAGATTGGGATCCAAGAACAC
** * * *
641577 ATTATCTTCATTTGGATACATAACAGTGATGCTTTGGTGTCGCAAGA
430 ATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
* * *
641624 AAAGTTTTTCTTTCCTA-TGTTTTTGAT-GCAATCAAAGTTTGCCTCTTAAATAAGACAAACATG
1 AAAGCTTTTCTTTCC-ACCGTTTTTGATAG-AATCAAAGTTTGTCTCTTAAATAAGACAAACATG
**
641687 AATAGTCATGTTAATCCCCATTCTTTTCTGGATTAGGCACC-TAAACATAGTCTTCTCATAAAGA
64 AATAGTCATACTAATCCCCATTCTTTTCTGGATTAGGCACCATAAACATAGTCTTCTCATAAAGA
* * * * ** *
641751 TACACGATATTAAAGCTGTGGATAAGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTA
129 TACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTA
* ** * **
641816 AGTTCATGCCTTTAATGAGACAAACATGGACTCTAGTAATGATCTTTTTTCATTTTGTGATTAGA
194 AGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAG-
* *
641881 G-ACTATAAACACATTCTCTTCATTAGGATAAATGACATGGATGATTTTCTTTTGCATGGAAATC
258 GCACTATAAACACATTCTCTTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATC
* * * * * *
641945 TTATCTTTGCCTTATTTTCCTTAAAATCAAAACTCAGCCCTTAAATACGACATGCATCGATTCTC
323 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTC
** * * * * *
642010 GTAATTGTCCCCGTTAATTTCAAGATTGCGATCCAAGAACACATTCCCTTTATTAGGATACATGA
388 GTAACAGTCTCCATTCATTTCAAGATTGGGATCCAAGAACACATTCCCTTCATTAGGATACATGA
*
642075 CATTGATGCTTTGGTGTCGTAAGA
453 CATTGATGCTTTGGTGTCGCAAGA
* * * * **
642099 AAAGTTTTTCTTTCCACCATTTTTGATAGAATAAAAGTTTGTTTCACAAATAAGACAAACATGAA
1 AAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
** * *
642164 TAGTCATACTAATCCCTTTTCTTTT-TAGGATTAGGCACCAAAAACATAGTATTCTCATAAAGAT
66 TAGTCATACTAATCCCCATTCTTTTCT-GGATTAGGCACCATAAACATAGTCTTCTCATAAAGAT
* * *
642228 ACACGATATTGATGCTTTGGTTTTGTAAGAAAGGCTTTCTTCCCACCAATTTTTGCAAAGTCTAA
130 ACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAA
* * * * *
642293 GTTCCTGCCTCGAATGAGAGAAAAAGGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGC
195 GTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGC
* * *
642358 ACTATAAACACATTCTCTTCATTAGGATAAATGATTTTGATGATTTTATTTTAG-ATGAAAATCT
260 ACTATAAACACATTCTCTTCATTAGGATAAATGATATTGATGATTTTCTTTT-GCATGGAAATCT
* * * * * * *
642422 TTTCTCTGCCCTATTTTTCTTAAAATCAAAATTCATCCTTTAAAAATGACTAGCTTCGATTCTCA
324 TTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCG
* * *
642487 TAACAGTCTCCATT--TTATCCAACATTGGGAACGAAGAACACATTCCCTTCATTAGG----ATG
389 TAACAGTCTCCATTCATT-T-CAAGATTGGGATCCAAGAACACATTCCCTTCATTAGGATACATG
* **
642546 -CACT--T-CTTTGGTGTCATAAGA
452 ACATTGATGCTTTGGTGTCGCAAGA
* * * * * * *
642567 AAAGCTTTTCTTTCCTCCGTTGTTGATAAAATCCAAGTTGGTCTTTTAAATATGACAAACATGAA
1 AAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
* * * * * *
642632 AAGTCATACCAATCCTCATTCTTTT-TAGGATTAGGCACTATAGACATAGTCTTCAT-ATAAGGA
66 TAGTCATACTAATCCCCATTCTTTTCT-GGATTAGGCACCATAAACATAGTCTTC-TCATAAAGA
*
642695 TACACGATATTG-TCACTTTGGTTTCGCAAGAAAAGG-TTTCTTCCCACCAATTTTTGTAAAGTC
129 TACACGATATTGAT-GCTTTGGTTTCGCAAG-AAAGGCTTTCTTCCCACCAATTTTTGTAAAGTC
* * * *
642758 TAACTTCATGCCTCAAATGAGACAAAAATGGATTCTAGTAATGATCATCATTCATTTTGTGATTA
192 TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTA
* * ** *
642823 GGCACTATATAAACATATTCTCCTCCGTAGGAAAAATGATATTGATGATTTTCTTTTGCAT--AA
257 GGCAC--TATAAACACATTCTCTTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAA
* * * * * *
642886 CGTCTTTTCTTTGCCTTATTTTCCTTAAAAGCAAAATTCATCAC-TAAAGTATAATAAGCATCGA
320 -ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAA-TATGACAAGCATCGA
* * ** * * * * * *
642950 TTCTCATAACAATCTCCAAACTTTTCAAGATTGGGAACTAAGAACACATTTCTTTCAATAGGATA
383 TTCTCGTAACAGTCTCCATTCATTTCAAGATTGGGATCCAAGAACACATTCCCTTCATTAGGATA
* * * *
643015 CATAATATTGATGCTTTGGTGTTGTAAGA
448 CATGACATTGATGCTTTGGTGTCGCAAGA
* * * * ** **
643044 AAAGTTTTTCTCTCCACCTTTTTTGATAGAATCAAAGTTTGTCTCTTTAATAAGTTAAATGTGAA
1 AAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
* * * * * ** *
643109 TAGTCATACTAATCCCTATTATTTTCAGGATTAGGCACCATAAATATAGTCTACTTGTAAGGATA
66 TAGTCATACTAATCCCCATTCTTTTCTGGATTAGGCACCATAAACATAGTCTTCTCATAAAGATA
* * * * * *
643174 GACAATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTCTCCCCACCAATTTTTGTAGAGTCGAAG
131 CACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAG
* * *
643239 TTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGTA
196 TTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCA
* * * * * **
643304 GTATAAACACTTTCTCCTCAATAGGATAAATGATATTGATGATTTT-TTTTACATTAAAATCTTT
261 CTATAAACACATTCTCTTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTT
* * * * * *
643368 TCTTTGCCCTATTTTTCTTAAAATCAAATTTCATCCTTTAAAAATGACAAGCTTCGATTCACGTA
326 TCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTA
* ** * * * * * * *
643433 ACAGTCTCCACTC-TACCCAAGACTGGGAACCAGGAATACATTCCCTTCATTAAGATACGTGACT
391 ACAGTCTCCATTCAT-TTCAAGATTGGGATCCAAGAACACATTCCCTTCATTAGGATACATGACA
* *
643497 TTGAAGCTTTGGTGTTGCAAGA
455 TTGATGCTTTGGTGTCGCAAGA
* * * * * **
643519 AAAGCTTTTCTGTCCACCATTTTTGATTGCATCCAAGTTTGTCTAATAAATAAGACAAACATGAA
1 AAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
** *
643584 TAGTCATACTAATCCATATTCTTTT-TAGGATTAGGCACCATAAACATATTCTTCTCATAAAGAT
66 TAGTCATACTAATCCCCATTCTTTTCT-GGATTAGGCACCATAAACATAGTCTTCTCATAAAGAT
* * ** * * *
643648 AAACGATATTGATGCTTTGTTTTCATAAGAAAAGCTTTGTTCCCACCAATTTTTGTAAAGTTTAA
130 ACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAA
* * * * *
643713 CTTCGTGCATTAAATGAGATAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGATTAGGC
195 GTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGC
* * * * *
643778 ACTATAAACACATTCTCCTCATTAGGAAAAATGATATTG-TGGTTTTTCTTTCGCATGAAAATCT
260 ACTATAAACACATTCTCTTCATTAGGATAAATGATATTGAT-GATTTTCTTTTGCATGGAAATCT
* * * * *
643842 TTTCTTTGACCAATTTTCTTTAAAATCAAAATTCATCCCCTAAATATGAGAAGCATCGATTCTCG
324 TTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCG
* * * * * * *
643907 TAACAATCTCCATTCATTTCAGGATTGGGAACCAATAAAAAATTCCCTTCAATAGGATACATGAC
389 TAACAGTCTCCATTCATTTCAAGATTGGGATCCAAGAACACATTCCCTTCATTAGGATACATGAC
643972 ATTGATGCTTTGGTGTCAG-AAGA
454 ATTGATGCTTTGGTGTC-GCAAGA
* ** * * *
643995 AAAGTTTTTCTTTCCACTATTTTTGACAGAATCAAAGTTTATCTCTTAAGTAAGACAAACATGAA
1 AAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
* *
644060 TAGTCATATTAATCCCCATTCTTTT-TAGGATTACGCACC-TAAACATAGTCTTCTCAT-AAGCA
66 TAGTCATACTAATCCCCATTCTTTTCT-GGATTAGGCACCATAAACATAGTCTTCTCATAAAG-A
** * * * * *
644122 TACACGATATTGACACTTTGGTTTCGCAAAAAAGGCATTT-TTCCTACCAATTTTGGCAAATTCT
129 TACACGATATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTCTTCCCACCAATTTTTGTAAAGTCT
* * * * *
644186 AAGTTCGTGCCTAAAATGAGATAAATATGGATTCTAGTAATGATCTTCTTTCATTTTATGATTAG
193 AAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAG
*
644251 GCACTATAAACACATTCTCTTCATTAGGATAAATGATATTAATGATTTTCTTTTGCATGGAAATC
258 GCACTATAAACACATTCTCTTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATC
* * * *
644316 GTATCTTTGCCCTATTTTCCTT-AAATCAAAATTCAGCCCTTAAATATGACAAGCATCGATCCTC
323 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTC
* ** *
644380 GTAACAATCTCCATTCATTTCAAGATTGCAATCCATGAACACAATT-CCTTCATTAGGATACATG
388 GTAACAGTCTCCATTCATTTCAAGATTGGGATCCAAGAACAC-ATTCCCTTCATTAGGATACATG
* *
644444 ACATTAATGCTTTGGTGTCGTAAGA
452 ACATTGATGCTTTGGTGTCGCAAGA
* * * * *
644469 AAAGCTTTTCTTTCCACTGTTTTTGCTAGAATGAAAGTTTGTTTCTTAAAAAAGACAAACATGAA
1 AAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
* * ** *
644534 TAGTCATACTAATCCCTATTCTTCTCAAGATTAGGCACCATTAACATAGTCTTCTCATAAAGATA
66 TAGTCATACTAATCCCCATTCTTTTCTGGATTAGGCACCATAAACATAGTCTTCTCATAAAGATA
* * * *
644599 CACGAAATTGCTGCTTTGTTTTCGCAAGAAAGGCTTTCTT----CCAATTTTTGCAAAGTCTAAG
131 CACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAG
* * * * *
644660 TTCATGCCTTAAATGAGACAAAAATGGATTCTAGTAATGATTTTCATTCATTTTGTGATTAGACA
196 TTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCA
* * * * *
644725 CTACAAACACGTTCTCTTCATTAGGATAAATGATGTTAAAGA-TTTCTTTTGCATGGAAATCTTT
261 CTATAAACACATTCTCTTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTT
* ** * * * ** *
644789 TC--TG--C-GTTCCCCTTAAAATCAAAATTCAACCCTAAAATATAACAAGCATTAATTCTCATA
326 TCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTA
* * *
644849 ACATTCTCCATTCTTTTCAAGATTGGGATCCAAGAACACATTCCCTTCATTAGGATACTTGACAT
391 ACAGTCTCCATTCATTTCAAGATTGGGATCCAAGAACACATTCCCTTCATTAGGATACATGACAT
*
644914 TGATGCTTTGGTGTCGAAAGA
456 TGATGCTTTGGTGTCGCAAGA
* * ** *
644935 AAAGCCTTTCTTTCCACCGTTTTTGATAGATTCAAAGTTTG--TCTTATGTAAGACAAACTTGAA
1 AAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
* ** ** * * * *
644998 TAGTCA-AGCAAATCCTTATTCTTTTCAAGATTAGGCACTATAAAAAAAGTTTTCTCATAAAGAT
66 TAGTCATA-CTAATCCCCATTCTTTTCTGGATTAGGCACCATAAACATAGTCTTCTCATAAAGAT
* ** * * ** *
645062 AGACGATATTGATGCTTTGGTGCCACAAGAAAGGTTTTCTTCTTACCAATTTTCGTAAAGTCTAA
130 ACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAA
* * *
645127 GCTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTGTGATGAGGC
195 GTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGC
* * * * *
645192 ACTATAAACATATTCTCTTAAATAGGATAAATTATATTAATGATTTTCTTTTGCATGGAAATCTT
260 ACTATAAACACATTCTCTTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTT
* * * *
645257 GTCTTTGCCCCATTTTCCTT-AAATCAAAATTCAACCATTAAATA-GAACAAGCATCGATTCTCG
325 TTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATG-ACAAGCATCGATTCTCG
* **
645320 TAATAGTCTCCATTCATTTCAAGATTGCAATCCAAGAACACATTCCCTTCATTAGGATACATGAC
389 TAACAGTCTCCATTCATTTCAAGATTGGGATCCAAGAACACATTCCCTTCATTAGGATACATGAC
* *
645385 ATTGATGCATTGGTGTCGTAAGA
454 ATTGATGCTTTGGTGTCGCAAGA
* * * *
645408 AAAACTTTTCTTTCCACCGTTTTTGATATAATGAAAGTTTGTTTCTTAAATAAGACAAACATGAA
1 AAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
* ** ** * *
645473 TAGTCATATTAATCCTTATTCTTTTCAAGATTTGGCACCATTAACATAGTCTTCTCATAAAGATA
66 TAGTCATACTAATCCCCATTCTTTTCTGGATTAGGCACCATAAACATAGTCTTCTCATAAAGATA
* * * * * *
645538 CATGATATTGATGCTTTGTTTTCTCAAGAAAGGCTTTCTTCCTACCAATTTTTGCAAATTCTAAG
131 CACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAG
* * * * * *
645603 TTCGTGTCTCAAATGAGACAAAAACTGGATTCTAGAAATAATCTTCACTCTTTTTGTGATTAGGC
196 TTCGTGCCTCAAATGAGACAAACA-TGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGC
* * * * * *
645668 ATTGTAAACACATTCTTTTCATTAGGATAAATGATATTGATCATTTTCTTTTACATGAAAATCTT
260 ACTATAAACACATTCTCTTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTT
* * * * * * * * *
645733 TTCTCTGTCCTATTTTTCTTAAAATCAAATTTCAACCTTTAAAAATGACAAGCTTCGATTCTCAT
325 TTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGT
* * * * *
645798 AACAGTCTCCATTC-TATCCAACATTGGGACCCAAGAACACATTCCCTTCATTAGGATGCACGAC
390 AACAGTCTCCATTCAT-TTCAAGATTGGGATCCAAGAACACATTCCCTTCATTAGGATACATGAC
* *
645862 ATTGATTCTTTGGTGTCTCAAGA
454 ATTGATGCTTTGGTGTCGCAAGA
** * * *
645885 AAAGCTTTT-TTTCTTCTGTTTTTGACAGAATCCAAGTTTGTCTCTTAAATAAGACAAACATGAA
1 AAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
* ** * * * *
645949 TAGTCATACCAATCATCATTCTTTT-TAGGATTAGGCGCCATAGATATAGTCTTCAT-ATAAGGA
66 TAGTCATACTAATCCCCATTCTTTTCT-GGATTAGGCACCATAAACATAGTCTTC-TCATAAAGA
* * ** *
646012 TACAAGATAATGACACTTTGGTTTCGCAAGAAAGGCTTTCTTCTCACCAATTTTTGTAAAGTCTA
129 TACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTA
* * * ***
646077 AATTCGTGCCTCAAATAAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTACAATTAGG
194 AGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGG
* * * * * * * *
646142 TACTATAAACACATTCTGTTTATTAGGATAAACGATATTGATAATTTTTTTTTTGCACGAAAAT-
259 CACTATAAACACATTCTCTTCATTAGGATAAATGATATTGATGA-TTTTCTTTTGCATGGAAATC
* * * *
646206 TTTT-TTTACCCAATTTTCCTTAAAATCTAAATTCATCCCTTAAATA-GACAAGCGTCGATTCTC
323 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTC
* * *
646269 GTAACAATCTCCACTCATTTCAAGATT-GCATTCCAAGAACACATTCCCTTCATTAGGATACATG
388 GTAACAGTCTCCATTCATTTCAAGATTGGGA-TCCAAGAACACATTCCCTTCATTAGGATACATG
* * * *
646333 ACTTTGATGCTTTAGAGTCACAAGA
452 ACATTGATGCTTTGGTGTCGCAAGA
* * * * * * *
646358 AAAGCTTTTTTTTCCTCTGTTTTTGATAGAATCAAAGTTTATTTCTTAAATAAGATAAACATTAA
1 AAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
* * *
646423 TAGTCATACTGATCCCCATTCTTTTCAGGACTAGGCACCATAAACATAGTCTTCTCATAAAGATA
66 TAGTCATACTAATCCCCATTCTTTTCTGGATTAGGCACCATAAACATAGTCTTCTCATAAAGATA
* * * * *
646488 CGCGATATTAATGCTTTGGTTTTGCAAGAAAGGGTTTCTTCCCACCAATTTTTGTAAAGTCTAAC
131 CACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAG
* * * *
646553 TTCGTACCTCAAATGAGACAAACATGGATTCTAGTTATGATCTTCATTAAGTTTGTGATTAGGCA
196 TTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCA
* * * *
646618 TTATAAACACATTCTCCTCATTAGGAAAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTT
261 CTATAAACACATTCTCTTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTT
* * * *
646683 TCTTTGCCCTATTTTCCTTAAAATTAAAATTCATCACTTAAATGTGACAAGCATCGATTCTCATA
326 TCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTA
* * * * * * *
646748 ACAATCTCTAATCTTTTCAAGATTGGGAACCAAGAACAC-TT-CTTTCATTAGGATACATAACAT
391 ACAGTCTCCATTCATTTCAAGATTGGGATCCAAGAACACATTCCCTTCATTAGGATACATGACAT
646811 TGATGCTTTGGTGTCGCAAGA
456 TGATGCTTTGGTGTCGCAAGA
* * * * * ** *
646832 AAAGGTTTT-TCCTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTTAGTAAGACAAAGGTAA
1 AAAGCTTTTCT-TTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGA
* * * * * * * *
646896 ATAGTCATTCTCAT-CCCATTATTTTTTGGATTAGGCACCATAAATATAGTCTACTTATAAGGAT
65 ATAGTCATACTAATCCCCATTCTTTTCTGGATTAGGCACCATAAACATAGTCTTCTCATAAAGAT
* *
646960 AGACGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTCTTCCCACCAATTTTTGTAAAGTCTAA
130 ACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAA
** * * * *
647025 GTTAATGCCTCAAATGTGACAAACATTGATTCTAGTAATGATCTTTATTCTTTTTGTGATTAGGC
195 GTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGC
* * * *
647090 TGC-ATAAACACATTCTCCTCATTAGGAGAAATGATATTGATGATTTTCTTTTACATGGAAATCT
260 -ACTATAAACACATTCTCTTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCT
* * * * * *
647154 TTTCTCTGCCCTATTTTTCTTAAAATCAAAATTCATCCTTTAAAAATGACAAGCTTCGATTCTCA
324 TTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCG
* * * * * * * * * *
647219 TAACAGTTTCCTTTC-TATCCAAGACTAGGAGCCAAGAATACATTCCTTTCGTTAGGATACATAA
389 TAACAGTCTCCATTCAT-TTCAAGATTGGGATCCAAGAACACATTCCCTTCATTAGGATACATGA
* * *
647283 CATTGAAGCTTTGGTGTTGTAAGA
453 CATTGATGCTTTGGTGTCGCAAGA
* * **
647307 AAAGGTTTTCCTTCCACCGTTTTTGATAGAATTTAAGTTTGTCTCTTAAATAAGACAAACATGAA
1 AAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
* * ** * * *
647372 TAGTCATACAAATGCTGATTCTTTT-TAGGATTAGGCACTATAAACATAGTCTTAAT-ATAATGA
66 TAGTCATACTAATCCCCATTCTTTTCT-GGATTAGGCACCATAAACATAGTCTT-CTCATAAAGA
* ** * *
647435 TACACGATATTGATGCTTTGTTTTCATAAGATAGGCTTTCTTCTCACCAATTTTTGTAAAGTCTA
129 TACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTA
* * *
647500 AGTTCGTGCCTCAAATGAGACGAACATAGATTCTAGTAATGATCTTCAGTCATTTTGTTG-TTAG
194 AGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTG-TGATTAG
* * * * *
647564 GCACTACAAACACATCCTCTTCATTAGGATAAATGATATTAATGATTTT-TTTTGCACGAAAATC
258 GCACTATAAACACATTCTCTTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATC
* *
647628 TTTTCTTTTCCCTATTTTCCTTAAAATCTAAATTCATCCCTTAAATATGACAAGCATCGATTCTC
323 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTC
* * ** * * * * *
647693 ATAGCAG-CTTCCCCTCATTTCAAGATTGCGATCTAATAACACATTCCCTTCATTAGGATATAGG
388 GTAACAGTC-TCCATTCATTTCAAGATTGGGATCCAAGAACACATTCCCTTCATTAGGATACATG
* * *
647757 ACATTGATGCTTCGGGGTCACAAGA
452 ACATTGATGCTTTGGTGTCGCAAGA
* *
647782 AAAGCTTTTCTTTCCAACGTTTTTGATAGAATCAAAGTTTATCTCT
1 AAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCT
647828 ATAATAAAAA
Statistics
Matches: 6030, Mismatches: 1017, Indels: 266
0.82 0.14 0.04
Matches are distributed among these distances:
463 1 0.00
464 105 0.02
465 9 0.00
466 149 0.02
467 1 0.00
468 351 0.06
469 126 0.02
470 68 0.01
471 121 0.02
472 6 0.00
473 569 0.09
474 693 0.11
475 1987 0.33
476 1079 0.18
477 358 0.06
478 2 0.00
483 2 0.00
485 1 0.00
487 2 0.00
489 2 0.00
491 1 0.00
493 2 0.00
497 1 0.00
500 92 0.02
501 301 0.05
502 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (476 bp):
AAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
TAGTCATACTAATCCCCATTCTTTTCTGGATTAGGCACCATAAACATAGTCTTCTCATAAAGATA
CACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAG
TTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCA
CTATAAACACATTCTCTTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTT
TCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTCGTA
ACAGTCTCCATTCATTTCAAGATTGGGATCCAAGAACACATTCCCTTCATTAGGATACATGACAT
TGATGCTTTGGTGTCGCAAGA
Found at i:649116 original size:476 final size:474
Alignment explanation
Indices: 647933--649274 Score: 1716
Period size: 476 Copynumber: 2.8 Consensus size: 474
647923 AGCCTAACCT
* * * *
647933 CATTAGGAAAAACGATATTGACT-ATTTTCTTTTTGCGTGAAAATCTTTTCTTCGCCCTATTTTC
1 CATTAGGAAAAATGATATT-AATGATTTTC-TTTTGCATGAAAATCTTTTCTTTGCCCTATTTTC
*
647997 CTTAAAATCAAAATTCATCTCTTAAAT-TTGACAAGCATCAATTTTCGTAACAATCTCCATCCTT
64 CTTAAAATCAAAATTCATCCCTTAAATATTGACAAGCATCAATTTTCGTAACAATCTCCATCCTT
* * *
648061 CTCATGATTGGG-GCCAATAACACATTCCATTCATTAGGATACATGACATTGATGCTTTGGTGTC
129 TTCAAGATTGGGAACCAATAACACATTCC-TTCATTAGGATACATGACATTGATGCTTTGGTGTC
*
648125 GCAAGAAAAGTTTTTCTTTCCA-CTGTTTTTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAA
193 GCAAGAAAAGTTTTTCTTT-CATCTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
* * * * * * *
648189 AAATGAATAGTCATATTAATCCCCATTGTTTTCAGGATTAGGCACCTTAAACATAGTATTCTTAT
257 ACATGAATAGTCTTATTAATCCCCAATATTTTCAGGATTAGGCACCCTAAACATAGTCTTCTCAT
** * * * * * * *
648254 AAGGATACACGATATTGGCGCTTTGGTTTCGCAAGAAAGGTTTTTTTCCCTCTAATTTTTGTAAT
322 AAGGATACACGATATTGATGCTTTGG-TTCACAAGAAAGGCTTTCTTCCCACCAATTTTTATAAA
* *
648319 GTCTAAGTTTGTCCCTCAAATCAACAAACATGGATTCTAGTAATAATATTCATTCATTTTGTGAT
386 GTCTAACTTTGTCCCTCAAATCAACAAACATGGATTCTAGTAATAATATTCAATCATTTTGTGAT
* **
648384 TCGACACTATAAACACATTCTCTT
451 TAGACACTATAAACACATTCTCCG
* ** * *
648408 CATTAGGATAAATGACGTCAAAGATTTTCTTTTGCAT-AGAAATC-TTTCTTTGCCCTATTTTCC
1 CATTAGGAAAAATGATATTAATGATTTTCTTTTGCATGA-AAATCTTTTCTTTGCCCTATTTTCC
* * * *
648471 TTAAAATCAAAATTCATCCCATAAATA-TGACAAGCTTCAATTTTTGTAACAATCTTCATCCTTT
65 TTAAAATCAAAATTCATCCCTTAAATATTGACAAGCATCAATTTTCGTAACAATCTCCATCCTTT
* * * * *
648535 TCAACATTAGGAACCAATAACGCATTTCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCA
130 TCAAGATTGGGAACCAATAACACA-TTCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCG
* *
648600 CAAGAAAAGTTTTTCTTTCTAT-TATTTTTGATAGAATCAAAGTATGTCTCTTAAATAAGACAAA
194 CAAGAAAAGTTTTTCTTTC-ATCTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAA
*
648664 CGTGAATAGTCTTATTAATCCCCAATATTTTCAGGATTAGGCACCCTAAACATAGTCTTCTCATA
258 CATGAATAGTCTTATTAATCCCCAATATTTTCAGGATTAGGCACCCTAAACATAGTCTTCTCATA
** *
648729 AGGATACACGATATTGATGCTTTGGAACCACAAGAAAGGCTTTCTTCCCCCCAATTTTTATAAAG
323 AGGATACACGATATTGATGCTTTGG-TTCACAAGAAAGGCTTTCTTCCCACCAATTTTTATAAAG
* * * * *** * * * * * *
648794 TTTAACTTTGTGCCTTAAATGATATTGATATTGATTGTAGTCATGATCTTCAATCATTTTGTGAT
387 TCTAACTTTGTCCCTCAAATCA-ACAAACATGGATTCTAGTAATAATATTCAATCATTTTGTGAT
* *
648859 TAGGCACTATCAACACATTCTCCG
451 TAGACACTATAAACACATTCTCCG
* * * *
648883 CATTAGGAAAAATGATATTAATGATTTTCTTTTGTATGAAAATCTTTTTTTTG-CATGATTTTCA
1 CATTAGGAAAAATGATATTAATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCT-ATTTTCC
* * * * *
648947 TTAAAATCTAAATTCATCCCTTAAATATTG-CAAGCATCGATTTTCGTAACAGTCACCATTCTTT
65 TTAAAATCAAAATTCATCCCTTAAATATTGACAAGCATCAATTTTCGTAACAATCTCCATCCTTT
*
649011 TCAAGATTGGGAACCAATAACACATTCCTGTCATTAGGATAAATGACATTGATGCTTTGGTGTCG
130 TCAAGATTGGGAACCAATAACACATTCCT-TCATTAGGATACATGACATTGATGCTTTGGTGTCG
*
649076 CAAGAAAAGTTTTTCTTTCATCTGTTTTTGATAGAATCAAAGTTTGACTCTTAAATAAGACAAAC
194 CAAGAAAAGTTTTTCTTTCATCTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
** * * *
649141 ATGAATAGTCTTATTAATCCATAATCTTTTCAAGATTAGGCACCCTAAACATAGTCTCCTCATAA
259 ATGAATAGTCTTATTAATCCCCAATATTTTCAGGATTAGGCACCCTAAACATAGTCTTCTCATAA
* * * *
649206 GGATACACGATATTGACT-CTTTGGTTCAGTAAGAAAGGCTTTCTTCCCACCAATTCTTGTAATG
324 GGATACACGATATTGA-TGCTTTGGTTCA-CAAGAAAGGCTTTCTTCCCACCAATTTTTATAAAG
649270 TCTAA
387 TCTAA
649275 GTTCATGCCT
Statistics
Matches: 745, Mismatches: 106, Indels: 31
0.84 0.12 0.04
Matches are distributed among these distances:
473 85 0.11
474 243 0.33
475 120 0.16
476 294 0.39
477 3 0.00
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (474 bp):
CATTAGGAAAAATGATATTAATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCT
TAAAATCAAAATTCATCCCTTAAATATTGACAAGCATCAATTTTCGTAACAATCTCCATCCTTTT
CAAGATTGGGAACCAATAACACATTCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCA
AGAAAAGTTTTTCTTTCATCTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
GAATAGTCTTATTAATCCCCAATATTTTCAGGATTAGGCACCCTAAACATAGTCTTCTCATAAGG
ATACACGATATTGATGCTTTGGTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTATAAAGTCTA
ACTTTGTCCCTCAAATCAACAAACATGGATTCTAGTAATAATATTCAATCATTTTGTGATTAGAC
ACTATAAACACATTCTCCG
Found at i:649684 original size:397 final size:396
Alignment explanation
Indices: 648941--649688 Score: 967
Period size: 397 Copynumber: 1.9 Consensus size: 396
648931 TTTTGCATGA
* * * * ** *
648941 TTTTCATTAAAATCTAAATTCATCCCTTAAATATTGCAAGCATCGATTTTCGTAACAGTCACCAT
1 TTTTCATTAAAATCAAAATTCAACCCTGAAATATTGCAAGCATCAATTCCCGCAACAGTCACCAT
* *
649006 TCTTTTCAAGATTGGGAACCAATAACACATTCCTGTCATTAGGATAAATGACATTGATGCTTTGG
66 TCTTTTCAAGATTGGGAACCAAGAACACATTCCTGTCATTAGGATAAATGACATTGATGCTATGG
*
649071 TGTCGCAAGAAAAGTTTTTCTTTCATCTGTTTTTGATAGAATCAAAGTTTGACTCTTAAATAAGA
131 TGTCGCAAGAAAAGTTTCTCTTTCATCTGTTTTTGATAGAATCAAAGTTTGACTCTTAAATAAGA
** * *
649136 CAAACATGAATAGTCTTATTAATCCATAATCTTTTCAAGATTAGGCACCCTAAACATAGTCTCCT
196 CAAACATGAATAGTCAAACTAATCCATAATCTTTTCAAGATTAGGCACCATAAACATAGTCTCCT
* *
649201 CATAAGGATACACGATATTGACTCTTTGGTTCAGTAAGAAAGGCTTTCTTCCCACCAATTCTTGT
261 CATAAAGATACACGATATTGACTCTTTGGTACAGTAAGAAAGGCTTTCTTCCCACCAATTCTTGT
* *
649266 AATGTCTAAGTTCATGCCTCAAATGAAATCTTTTCTTGGTTCATTTGCATGGAAATCTTTTCTTC
326 AAAGTCTAAGTTCACGCCTCAAATGAAATCTTTTCTTGGTTCATTTGCATGGAAATCTTTTCTTC
649331 GCCTTG
391 GCCTTG
* * * *
649337 TTTTCCTTAAAATCAAAATTCAACCCTGAAATA-TGATAAGCATCAATTCCCGCAACATTCTCCA
1 TTTTCATTAAAATCAAAATTCAACCCTGAAATATTG-CAAGCATCAATTCCCGCAACAGTCACCA
* *
649401 TTCTTTTCAAGATT-GGAATCCAAGAACACCTTCCCT-TCATTAGGATACATGACATTGATGCTA
65 TTCTTTTCAAGATTGGGAA-CCAAGAACACATT-CCTGTCATTAGGATAAATGACATTGATGCTA
* * * * **
649464 TGGTGTTGCGAGAAAAGTTTCTCTTTCCA-CTGTTTTTTGATAGACTCAAAGTTTGTCTCTTAGG
128 TGGTGTCGCAAGAAAAGTTTCTCTTT-CATCTG-TTTTTGATAGAATCAAAGTTTGACTCTTAAA
* * * *
649528 TAAGACAAACATGAATAGTCAAACTAATCC-TCATTCTTTTTAGGATTAGGCACTATAAACACTA
191 TAAGACAAACATGAATAGTCAAACTAATCCAT-AATCTTTTCAAGATTAGGCACCATAAACA-TA
* * *
649592 -TCTTCTCATAAAGATAGACGATATTGA-TGCTTTGGTAC-G-ACATGAAAGGTTTTCTTCCC-C
254 GTCTCCTCATAAAGATACACGATATTGACT-CTTTGGTACAGTA-A-GAAAGGCTTTCTTCCCAC
* * *
649652 TCAATTTTTGTAAAGTTTAAGTTCGCGCCTCAAATGA
316 -CAATTCTTGTAAAGTCTAAGTTCACGCCTCAAATGA
649689 GACAAACATG
Statistics
Matches: 301, Mismatches: 40, Indels: 21
0.83 0.11 0.06
Matches are distributed among these distances:
395 7 0.02
396 131 0.44
397 161 0.53
398 2 0.01
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.36
Consensus pattern (396 bp):
TTTTCATTAAAATCAAAATTCAACCCTGAAATATTGCAAGCATCAATTCCCGCAACAGTCACCAT
TCTTTTCAAGATTGGGAACCAAGAACACATTCCTGTCATTAGGATAAATGACATTGATGCTATGG
TGTCGCAAGAAAAGTTTCTCTTTCATCTGTTTTTGATAGAATCAAAGTTTGACTCTTAAATAAGA
CAAACATGAATAGTCAAACTAATCCATAATCTTTTCAAGATTAGGCACCATAAACATAGTCTCCT
CATAAAGATACACGATATTGACTCTTTGGTACAGTAAGAAAGGCTTTCTTCCCACCAATTCTTGT
AAAGTCTAAGTTCACGCCTCAAATGAAATCTTTTCTTGGTTCATTTGCATGGAAATCTTTTCTTC
GCCTTG
Found at i:650210 original size:476 final size:476
Alignment explanation
Indices: 649309--667180 Score: 18207
Period size: 475 Copynumber: 37.7 Consensus size: 476
649299 TCTTGGTTCA
* * * * * * *
649309 TTTGCATGGAAATCTTTTCTTCGCCTTGTTTTCCTTAAAATCAAAATTCAACCCTGAAATATGAT
1 TTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGAC
* * * * *
649374 AAGCATCAATTCCCGCAACATTCTCCATTCTTTTCAAGATT-GGAATCCAAGAACACCTTCCCTT
66 AAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAA-CCAAGAACACATTCCCTT
* * * *
649438 CATTAGGATACATGACATTGATGCTATGGTGTTGCGAGAAAAG-TTTCTCTTTCCACTGTTTTTT
130 CATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTT-TCTTTCCACCG-TTTTT
* ** * *
649502 GATAGACTCAAAGTTTGTCTCTTAGGTAAGACAAACATGAATAGTCAAACTAATCCTCATTCTTT
193 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTT
* * * * *
649567 TTAGGATTAGGCACTATAAACACTA-TCTTCTCATAAAGATAGACGATATTGATGCTTTGG-TAC
258 TCAGGATTAGGCACCATAAACA-TAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTC
* * * **
649630 GACATGAAAGGTTTTCTTCCC-CTCAATTTTTGTAAAGTTTAAGTTCGCGCCTCAAATGAGACAA
322 G-CAAGAAAGGCTTTCTTCCCAC-CAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAA
* * * *
649694 ACATGGATTCTAGTAATGATCTTCTTTCAGTTTT-TGATTAGGCACAATAACCACGTTCTCCGT-
385 ACATGGATTCTAGTAATGATCTTCATTCA-TTTTGTGATTAGGCACTATAAACACATTCTCC-TC
* * *
649757 ATTATGAAAAATGATATTGACGATTTTCT
448 ATTAGGATAAATGATATTGATGATTTTCT
* *
649786 TTTGCATAAAAATCTTTTCTTTGCCCGATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGAC
1 TTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGAC
* * * * *
649851 AAGCATCAATTTTTGTAACAATCACCATT-TTTTCCAAGATTGGGAACCAATAACACATTCCCTT
66 AAGCATCGATTCTCGTAACAATCTCCATTCTTTT-CAAGATTGGGAACCAAGAACACATTCCCTT
* *
649915 CATTAGGATACATGACATTGATGCTTTGCTGTCGCAAAAAAAGCTTTTCTTTCCACCGTTTTTGA
130 CATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGA
* * ** * * ** *
649980 TAGATTCAAAGTTTGTCTTTTATGTAAGACAAACATTAATAGTCATATTAATCGTCATTCTTTTA
195 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTC
* * * * * ** *
650045 AGGATTAGGCGCTATAAACATAGTCTTGTCATTAGGATAGAAAATATTGATGCTTTGGTTTCACA
260 AGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCA
* * * * * ** *
650110 TGAAAGGCTTTCTTCTCACTAATTTTTTTAAAGTCTATGTTTGTGCCTCAAATGAGACAAACCTG
325 AGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATG
* * * * *
650175 GATTCTAGTGATGATCTTCTTTCATTTTGTGATTAGGCACTATAAACACATTCTCTTCGTTAGTA
390 GATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGA
*
650240 TAAATGATACTGATGATTTTCT
455 TAAATGATATTGATGATTTTCT
* * * * * * * * *
650262 GTTGCTTGGAAATATTATATTTACCCTATTTTTCTTAAAATCAAAATTC-TGCCCTTAATTTATG
1 TTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCAT-CCCTTAA-ATATG
* * * * * * * * *
650326 ACAAGTACCGATTCTTGTAACAGTCTCTATTCATTTCAAGATTGCGATCCAAGAACACATTCACT
64 ACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCCT
* ** * * * * * * * *
650391 TCTTTATAATTCATG-GATTGATGCTTCGATGTCGTAAGAAAAGCTTTTTTTTCCATCGTTTTTT
129 TCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTG
* * * * * *
650455 ATAGAATCAAAGTTTGTTTCTTAAATAAGACACATATGAATAGTTATACAAATCCCTATTCTTTT
194 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTT
* * * * * * **
650520 CTA-GATTAGGCACCATAAACCTATTCTTCTTATAAAGATACATGAGATTGACACTTTGGTTTCG
259 C-AGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCG
* * * * *
650584 CAAGAAAAGCTTTCTTCCTACCAATTTTTGTAAAGTCGAAGTTCATACCTCAAATGAGACAAATA
323 CAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACA
* * *
650649 TGGATTCTAATAATGATCTTCATTCATTTTGTGATTAGGCACTATAAGCACATTCTCCTGATTAG
388 TGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAG
* * * **
650714 GAAAAATTATATTAATTTTTTTCT
453 GATAAATGATATTGATGATTTTCT
* ** * *
650738 TTTGCATGAAAATATTTTCTTTGCCCTATTTTATTTAAAATTAAAATTCATCCCTTAAATACGAC
1 TTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGAC
* * * * * * *
650803 AAGCATCGATTCTTGTAGCAGTTTCCATTCATTTCATA-ATTGGGAACCAATAACACATACCCTT
66 AAGCATCGATTCTCGTAACAATCTCCATTCTTTTCA-AGATTGGGAACCAAGAACACATTCCCTT
** * * * *
650867 TGTTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGTTTTTGTTTCCACTGTTTTTTA
130 CATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGA
* * * * * *
650932 TAGAATCAAAGTTTGTCTTTTAAATAAGATAAACGTGAATAGTCATATTAATCCCTAATCTTTTC
195 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTC
* ** * * * * * ** **
650997 AGGATTAGGCACCCTAAATGTAGTCTTTTTAGAAGAATGCACGATATTGACACTTTGGTTTCATA
260 AGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCA
* * * **
651062 AGAAAGGGTTTTTTCCCACCAATTTTTATATTGTCTAAGTTCATGCCTCAAATGAGACAAACATG
325 AGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATG
* * * * * *
651127 GATTCTAGTGATGATCTTCCTTAATTTTGTGATTACGCATTATAAACACATTCTCTTCATTAGGA
390 GATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGA
* *
651192 TAAATGATGTTGAAGATTTTCT
455 TAAATGATATTGATGATTTTCT
* * *
651214 TTTGCATGAAAATCTTTTCTTCGCCCTATTTTCCTTAAAATCAAAATTCAACCCTAAAATATGAC
1 TTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGAC
* * * * *
651279 AAGCATCAATTCTCGTAATATTCTCCATTCTTTCCAAGATTGGGATCCAAGAACACATT-CCTTC
66 AAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTC
* * * * * * * * *
651343 ATTAGGATACATGACATTAAAGCTATGGCGTTGCAAGAAATGTTTTTCATTCCACTGTTTTTGAT
131 ATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGAT
* ** * * * * *
651408 AGACTCAAAGTTTGTCTCTTATGTAAGACAAACCTGAATTGTCAAACTAATTCTCATTCTTTTCA
196 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCA
* * * * ** **
651473 GGATTAGACACTATAAACATAGTCTTCTCACAAGGATAGACGATATTGATGCTTTGGTACCATAA
261 GGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAA
* ** * * * *
651538 GAAAGGCTTTCTTCTCTTCAATTTTTGTAAAGTTTAAGTTCGTGCCTTAAATGAGACAAACATGA
326 GAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGG
* * * *
651603 ATTCTAGTAATGATCTTCTTTCATTTTGTGATTAGGCATTATAAGCACATTCTCTCCGCATTAGG
391 ATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACA-T-TCTCCTCATTAGG
*
651668 AAAAATGATATTGATGATTTTCT
454 ATAAATGATATTGATGATTTTCT
* * * * *
651691 TTTGCATGAAAATCTTTTCTTT-ACCTAATTTTCCTTAAAATCAATATCCATCCCCTAAATACGA
1 TTTGCATGAAAATCTTTTCTTTGCCCT-ATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGA
* * * *
651755 CAAGCATCGATTTTCGTAACAATCACCATTCTTTTCATGATTGGGAACCAATAACACATTCCCTT
65 CAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTT
*
651820 CATTAGGATACATGACATTGATGCTTTGGTGACGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGA
130 CATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGA
* ** * *
651885 TAG-ATTAATAGTTTGTCTCTTATGTAAGACAAACATGAATAGTCATACTAGTCCTCATTC-TTT
195 TAGAATCAA-AGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTT
* * * * *
651948 GAGGATTAGGCACTATAAACATAGTCTTCTCATTAGGATAAAC-AGTATTGATTG-TTTTGTTTC
259 CAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGA-TATTGA-TGCTTTGGTTTC
* * *
652011 GCAAGAAAGTCTTTCTTTCCACCAATTTTTTTAAAGTCTAAGTTCATGCCTCAAATGAGACAAAC
322 GCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAAC
* * * * * *
652076 TTGGATTCTAGTGATGATCTTCTTTCATTTTGTGATTAGGCACTATAAATACATTCTCTTAATTA
387 ATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTA
652141 GGATAAATGATATTGATGATTTTCT
452 GGATAAATGATATTGATGATTTTCT
* * * * *
652166 TTTGCATGGAATTCTTATCTTTGCCTTATTTTCC-T----T-AAAATT-ATGCCCTTAAATAAGA
1 TTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCAT-CCCTTAAATATGA
* * ** *
652224 CAAGCATCGATTCTCATAACAATCTCCATTCATTTCAAGATT-ACAATCCAAGAACGCATTCCCT
65 CAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAA-CCAAGAACACATTCCCT
* * * *
652288 TCCA-TAGGATACATGACATTGATGCTTTGGTGGCGTAATAAAAGCTTTTCTTTCCACCATTTTT
129 T-CATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTT
* * ** * * * *
652352 GATAGACTCAAAGTTTGTTTCTTAAATAAGATTAACATGATTAGTTATACAAATCCCAATTCTTT
193 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTT
* * ** * * * *
652417 TCAAGATTAGGCACCACAAACATTTTTTTCTCATAAAGATACACGATATTGACGCTTTGGTTTTG
258 TCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCG
* * *
652482 CAAGAATGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTTCA-GCCGCAAATGAGACAAGC
323 CAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAG-TTCATGCCTCAAATGAGACAAAC
* * * *
652546 ATGGATTCTAATAATGATCTTCATTCATTTTGTGATTAGACACAATAAACACATTCTTCTCATTA
387 ATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTA
* * *
652611 TGATAAATGATATTGATTATTTTTTTT
452 GGATAAATGATATTGATGA--TTTTCT
* * * * ** * *
652638 TTTGCTTGGAAATCTTTTCTTTGCCCTTTTTTCCTTAAAATCAAAATTCAACTTTTCAATATGTC
1 TTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGAC
* * * * * * * * * * ** *
652703 AAGCTTTGATTCTCGTAATAGTGTCCATTGTTTTCAAGTTTGGGAATCAATAGCACATTTTCTTT
66 AAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTC
* * * * * *
652768 TTTAGGATACATGACATTGATGCTTTGG-GTCACAAGAAAAGTTTTTCTTTTCATCGTTTTTTAT
131 ATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGAT
* * * * * *
652832 CGAATCAAAGTTTGTCTCTTAAATAAAACAAACATGAATAGTTAAACTAATCTCTATTCTTTTCA
196 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCA
* * * * * *
652897 AGATTAGGCACCATAAACATAGTCATCTCGTAAAGATACACGATATTCACGCTTTGGTTTCGCAA
261 GGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAA
** **
652962 GAAAGGCTTTCTTATTAGGATACAATTGACGCTTTTATTTCGTAAGAAAGGCTTTCTTCCCACCA
326 GAAAGGCTTTC----T----T-C---CCAC-CAATT-TTT-GT---AAA-G---TC-T------A
* ** ** * * * ** * * *
653027 ATTTTTTTAAACTCCAAGTTCGTGTCTCAAATGAGACAAACATGGATTCTAGTAACGATCTTCAT
362 A-GTTCAT-GCCT-CAA-AT-GAGACAAACATGG-----------ATTCTAGTAATGATCTTCAT
* * * *
653092 GCATTTTGTGGTTAGGCACTATAAACACATTCTCTTCATTAGGATAAACGATATTGATGATTTTC
411 TCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTC
653157 T
476 T
* * * *
653158 TTAGCATGAAAATCTTCTCTTTGCCCTATTTTCCTTAAAATCTAAATTCATCCCTTAAATATGAT
1 TTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGAC
* * * * * * * * *
653223 AAGTATTGAATCTCCTAACAGTCTCTACTCATTTCAAGATT-GCAATCCAAGAACACATTCCCTT
66 AAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAA-CCAAGAACACATTCCCTT
* * *
653287 TATTAGGATATATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTTA
130 CATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGA
* * * * * * *
653352 CAGAATCAAAGTTTGTTTCTTGAATAAGAAAAACATGAGTAGTCACACTAAT-CCCATTCATTTC
195 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTC
* * * * * * * * *
653416 AAGATTAGGCACCATAAGCATAGTTTTCTCATAAAGATACACAATATCGATACTTTGGTTTTGTA
260 AGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCA
* * * * * *
653481 AGAAAGACTTTTTTCCCTCCAATTTTTGTAAAGTCTAACTTCGTGCTTCAAATGAGACAAACATG
325 AGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATG
* * * *
653546 GATTCTAGCAATGATCTTCATTCATTTTGTGATTAGGCACTATAAATAGATTCGCCTCATTAGGA
390 GATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGA
*
653611 AAAATGATATTGATGATTTT-T
455 TAAATGATATTGATGATTTTCT
* * * *
653632 TTT-AATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATTAAAATTCATCCCATAAATATGAT
1 TTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGAC
* * **
653696 AAGGC-TCGAAATTCTC--AGCAATCTCCATTCTTTTCAAGATTGGGAACCAAGAACAGATTCTT
66 AA-GCATCG--ATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCC
* ** * *
653758 TTCATTAGGATACATAACATTGATGCTTTGGTGTCGCAAGAAAATTTTTTCTTTCTATCGTTTTT
128 TTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTT
* * * *
653823 TATAGAATCAAAGTTTGTCTTTTTTAATAAGACAAACATGAATAGTCATACTATTCCCCATTCTT
193 GATAGAATCAAAGTTTGTC-TCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTT
* * * * * * *
653888 TTCAAGATTAGACACCATAAATATAGTCTACTTATAAGGATGACA--ATATTGGTGCTTTGATTT
257 TTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGAT-ACACGATATTGATGCTTTGGTTT
* * * * *
653951 CCCAAGAAAAGCTTTCTACCCACCCATTTTTGCAAAGTAC-AAGTTCATGCCTCAAATGAGACAA
321 CGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGT-CTAAGTTCATGCCTCAAATGAGACAA
* * * *
654015 ATATGGATTCTAGTAATGATCTTCATT-TTTTTGTGATTAGGTATTATAAACACATTCTCCTCAT
385 ACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCAT
654079 TAGGATACAA-GATATTGATGATTTTCT
450 TAGGATA-AATGATATTGATGATTTTCT
* * * * * *
654106 TTTGCAT-AGAACTCTTTTCTTTGCCCTATTTTTCTTAAAATCAAAGTTCATCCTTTAAATAAGT
1 TTTGCATGA-AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGA
* ** * *
654170 CAAGCATTGATTCTCGTAACAGCCTCCATTCTTTTCAAGAATGTGAACCAA-AAGCACATTCCCT
65 CAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAACCAAGAA-CACATTCCCT
* * * * * *
654234 TTATTAGGATACATGACATTGATTCTTTGGTGTCGTAAAAAAAGCTTTTATTTCCACCGTTTTTT
129 TCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTG
* * * * * * *
654299 ATAGAATCAAAGTTCGTTTCATAAATAAGACAAACATGAATACTTATACAAATCCCTATTCTTTT
194 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTT
* * * * * **
654364 CAGGATTAGGCACCATAAACATTGTCTTCTAAAAAAGATACACGATATTGACGCTTTGGTTTCAT
259 CAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGC
* * * *
654429 AAGAGAGGCTTTCTTCCCACAAATATTTGTAAAGTCTAAGCTCATGCCTCAAATGAGACAAACAT
324 AAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACAT
* * *
654494 GGATTCTAGTAATGATCTTCATTCATATTGTGATTAGGCACCATAAACACATTCTCCTTATTAGG
389 GGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGG
*
654559 ATAAATGATATTAATGATTTT-T
454 ATAAATGATATTGATGATTTTCT
* * *
654581 TTTGCACGAAAATCTTTTCTTTGCCCTGTTTTCCTTAAAATCAAAATTTATCCCTTAAATATGAC
1 TTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGAC
* * * * * * *
654646 AAGCTTTGATTCTTGTAGCAGTCTCCATTCTTTTCAAGATTGGGAACCACGAGCACA-TCCTCTT
66 AAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCC-CTT
* * * * * * ** *
654710 CATTAGGATACATGATATTGATACTTTAG-GTCGCAAGAAAAGTTTTTCTTTTCGCAATTTTTGT
130 CATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGA
* * ** * *
654774 TAGTATCAAAGTTCGTCAGTTAAATATGACAAACATGAATAGTCATACTAATCCCCATTCCTTTC
195 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTC
* * * * *
654839 AGGATTAGGTACTATAAACATAGTCTTCTCTTAAGGATAGACGATATTGATGCTTTGGTTTTGCA
260 AGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCA
* * * * * *
654904 AGAAAGGCTTTCTTCTCACCAATTTTTGTAAAGTCTAGGTTCGTGTCACAAATGAGACAAACAAG
325 AGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATG
* *
654969 GATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCACATTACGA
390 GATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGA
* *
655034 AAAATGATATTGATGATTTTTT
455 TAAATGATATTGATGATTTTCT
* ** * * *
655056 TTTGCTTGAACTTCTTTCCGTTGCCCTATTTTCCTTAAAATTAAAATTCATCCCTTAAATATGAC
1 TTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGAC
** * * * *
655121 AAGGTTCGATTCTTGTAACAATTTCCATT-TTTTTAAGATTGGGAACCAAGAACACATTCCTTTC
66 AAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTC
* ** * * * *
655185 ATTAGGATACATAATGTTGATGCTTTGGTGTCGTAAAAAAAG-TCTTTCTTACCACTGTTTTTGA
131 ATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCT-TTTCTTTCCACCGTTTTTGA
* * *
655249 TAGAATCAAAATATGTCTCTTTAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTC
195 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTC
* ** * * * * * * * *
655314 AAGATTAGGGGCCATAAATATAGTCTACTTATAAGGATAAACAACATTGATGCTTTGGTTTTGAA
260 AGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCA
* * * * *
655379 AGTAAA-GCTTTCTTCCCACTAGTTTTTGTAAAGTCTAAGTTGAGGCCTTAAATGAGACAAACAT
325 AG-AAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACAT
* * * * * * * *
655443 GGATTCTAGTAAAGACCTTCATTCTTTTTATGATTAGGTAGTATAAACACATTCTCCTCGTGAGG
389 GGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGG
* *
655508 ATAAATGATATTAACGATTTTCT
454 ATAAATGATATTGATGATTTTCT
* * * * * * *
655531 TTTACATGGAAATCTTTTCTCTGCCCTAGTATT-CTTAAAATAAAAATTCATCCTTTAAAAATGA
1 TTTGCATGAAAATCTTTTCTTTGCCCTA-TTTTCCTTAAAATCAAAATTCATCCCTTAAATATGA
* * * * ** * *
655595 CAAGCTTCGATTCAT-GTAATAGTCTCTATTCTTCCCAAGATTGGGAGCCAAGAACACATTTCCT
65 CAAGCATCGATTC-TCGTAACAATCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCCT
* * * * * * *
655659 TCGTTAGGATGCAAGACATTGATGCTTTGGTGTAGCATGAAAAGGTTTTCTTTCCACCATTTTTG
129 TCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTG
* * * * * *
655724 ATAGAATCCAAGTTTGTCTCTTAAATAAGATAAACATTAATAGTCATACTAATCCTCAATCCTTT
194 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTT
* * *
655789 CAGGATTAGGCACCATAAACATAGTCTTCTTATAAGGATACACGATATTGATGCCTTGGTTTCGT
259 CAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGC
*
655854 AACAAAGGCTTTCCTT-CCACCAATTTTTGTAAAGTCTAAG-TCTATGCCTCAAATGAGACAAAC
324 AAGAAAGGCTTT-CTTCCCACCAATTTTTGTAAAGTCTAAGTTC-ATGCCTCAAATGAGACAAAC
* * * * *
655917 ATGGATTCTAGCAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTTTCTTCAATA
387 ATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTA
* *
655982 AGATAAACGATATTGATGATTTT-T
452 GGATAAATGATATTGATGATTTTCT
** * * * * *
656006 TTTATATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCTAAATTCTTCCCCTAAATATGAT
1 TTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGAC
* * * * * *
656071 AAGCATCGATTTTCGTAACAATCTCCACTCATTTCAAGATTGCGATCCAAGAACACATTCCCTCC
66 AAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTC
* * *
656136 ATTAGGATACATGGCATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGAT
131 ATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGAT
* * * * * * *
656201 ACAATCAACGTTTATTTCTTAAATAAGACAAACATGAATAGTTACACTAATCCCCATTCTTTTTA
196 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCA
* * * * * *
656266 GAATTAGGTACCATAAACTTAGTCTTCTCATAAAGATACACGATATT-AAGCTTCTGGTTTCGAA
261 GGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTT-TGGTTTCGCA
* * * * * * * *
656330 AGCATGGCTTTCTTCCCACCAATATTGGTAAAGTTTAACTTCGTGCCTCAAATGAGACAAACATT
325 AGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATG
* * * * *
656395 GATTCTAGTAATGATCTTCATTCATTTTGGGATTAGACACTATGAAA-ACATTCTGCTTAATAGG
390 GATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT-AAACACATTCTCCTCATTAGG
* * * *
656459 AAAAAAGATATTGGTGATTTTTTTTT
454 ATAAATGATATTGATGA---TTTTCT
* * * * * * *
656485 TTTGCATAAAAATATTTTTTTTTGCACAATTATT-CTTACAATCAAAATTCATCCCTTAAGTATG
1 TTTGCATGAAAAT-CTTTTCTTTGCCCTATT-TTCCTTAAAATCAAAATTCATCCCTTAAATATG
* * * * * * *
656549 ACAAGCATAGATTCTCATAACAATCTCCATTCTTTTTAAGATTAGGAACTAAGAAAACATTCTCT
64 ACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCCT
* * * * **
656614 TCATTAGAATACATGACATTGATGCATTGGTAG-CGCAAGAAAAGTTTTTCTGTCCATTGTTTTT
129 TCATTAGGATACATGACATTGATGCTTTGGT-GTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTT
* * * ** * *
656678 GATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACGTAAATAGTCATGTTAATCCCTATTGTTT
193 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTT
* * * * *
656743 TCAGGATTAGGCACCCTAAAAATAGTATTCTTATAAGGATACACGATATTGATGCTTTGGTTTTG
258 TCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCG
* * * * *
656808 TAAGAAAGGGTTTTTTCCCACCAATTTTTATAATGTCTAAGTTCATGCCTCAAATGAGACAAACA
323 CAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACA
*
656873 TGGATTCTAGT-ATCGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCTTCATTA
388 TGGATTCTAGTAAT-GATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTA
* * *
656937 GGATCAATGATGTTGAAGA-TTTCT
452 GGATAAATGATATTGATGATTTTCT
* * * * * **
656961 TTTGCGTGAAAATCTTTTATTTGCCCTATATTCCTTAAAATCAAAATTCAACCATGGAATATGAC
1 TTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGAC
* * * * * *
657026 AAGCATCAATTCTCGTAACATTCTCTATTATTTTCAAGATTGGGATCGAAGAACACATTCCCTTC
66 AAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTC
* * * * * *
657091 ATTAAGATACATGACATTAATGCTTTGGAGTTGCATGAAAAGCTTTTCGATT-CACCGTTTTTGA
131 ATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTC-TTTCCACCGTTTTTGA
* * ** * * * * *
657155 TAGATTCAATGTTTGTCTCTTATGTAAGACAAACTTAAAATAGTCAAACTAGTCCTCATTCTTTT
195 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT-GAATAGTCATACTAATCCCCATTCTTTT
* * * * * * * *
657220 CAGGATTAGGCACTATAAAAATAGTCCTCTCATTAGGATAGACAAGATTGATGATTTGGTTTCGC
259 CAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGC
** *
657285 AAGAAAGGCTTTCTTCCCACCAA-TTTTGTAAAGTCTAAGTTTGTACCTCAAATGAGACAAACAT
324 AAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACAT
* * * * * *
657349 GAATTCCAGTAATGATCTTCATTCATTTCGTGATTGGGTACTATACACACATTCTCCTCATTAGG
389 GGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGG
* ** *
657414 AAAAACAATATTGATGATTTTGT
454 ATAAATGATATTGATGATTTTCT
* * * * *
657437 TTTGCGTGAAAATCTTTTCTTTTCCCTATTTTTCTTAAAATGAAAATTTATCCCTTAAATATGAC
1 TTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGAC
** * * * * *
657502 AAGGTTCAATTATCATAACAATCACCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCTTTC
66 AAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTC
* *
657567 ATTAGGATACATAACATTGATGCTTTGGTGTCGCAA-AAGAAGTTTTTCTTTCCACCGTTTTTGA
131 ATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAA-AAGCTTTTCTTTCCACCGTTTTTGA
* * * * * * *
657631 TAGAATCAAAGTTTATCTCTTTAATAAGACAAACGTGAATAGTCATACTATTCACCATTTTTTTT
195 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTC
* * * * * *
657696 AGGATTAGGCACCATAAATATAGTCTACTTATAAGGGTAGACAATATTGATGCTTTGGTTTCGCA
260 AGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCA
* ** * * *
657761 AGAAAAGCTTTCTTCCTC-TTAATTTTTGTAAAGTCTAAGTTCATACCTCAAATGAGACCAATAT
325 AGAAAGGCTTTCTTCC-CACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACAT
* * * * * * * *
657825 AGATTCTAGTAATGATCTTTATTCTTTTTGTGATTAGGCAGTA-AAAGCATATTGTCCTCCTTAA
389 GGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA-CACATTCTCCTCATTAG
* *
657889 GATACATGGTATTGATGATTTT-T
453 GATAAATGATATTGATGATTTTCT
* * * * * * ** *
657912 TTCCT-CTATGGAAA--TTGTCTTTTGCCTTATTTTTCTTACAATCAAAGTTCATCTGTTAAAAA
1 TT--TGC-ATGAAAATCTTTTC-TTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATA
* * * * * * * * * **
657974 AGGCAAGGATTGATTCTCGTAACAGTGTCCATTCTTTTCAAGATTGTGAGCCAAAAACACATTTG
62 TGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCC
** * ** * *
658039 CTTTGTTAGGATATAAAACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCCACCATTTT
127 CTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTT
* * * * *
658104 TGATAGAATCAAAGTTTGTTTCTTAAATAAGACAAACATGAATAATTATACAAATCCCTATTCCT
192 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATT-CT
** * * *
658169 TTT-AGGATTAGGCACCACGAACATAGTCTTCTCATAAAGATAAACGATATTGACGCTTTGGTTT
256 TTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTT
* * * * * * * *
658233 CACAACAAAGGCTTTCTTCCTACCAATTTTTATCAAGTCTAAGTTCGTGCTTGAAATGAGACAAA
321 CGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAA
* **
658298 CATGGATTCTAGTAATGATCTTCATTCATTTTGT-AGTTAGGTACTATAAACACATTCTTTTCAT
386 CATGGATTCTAGTAATGATCTTCATTCATTTTGTGA-TTAGGCACTATAAACACATTCTCCTCAT
*
658362 TA-CATAAATGATATTGATGA-TTT-T
450 TAGGATAAATGATATTGATGATTTTCT
* * * * * * *
658386 TTTGCTTGAAAATCTTTTCTTTGTCCAATTTTCCTTAAAATAAAAATTCAACTCTTCAAAAATGA
1 TTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTT-AAATATGA
* * * * * * *
658451 CAAGCTTTGATTCTTGTAACAGTCTACATTATTTTCAAGATTGGGAACCAAGAACACATTCTCTT
65 CAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTT
* * * * * * * ** *
658516 CATTAGGATGCCTGACATTGATGCTTTCGAT-T-GCTAGAAATGTTTTTCTTTTCTTCATTTTTG
130 CATTAGGATACATGACATTGATGCTTT-GGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTG
* * * ** * * ****
658579 ATGGAATCAAAGTTTGTTTCTTGAATCGGACAAACTTGAATAGTCAAACTAATATTTATTCTTTT
194 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTT
* * * * * * * * *
658644 TAGAATTAGCCACCATACACATAGTCTTCTCATAAAGATACACAATATTGACGATTTGGTTTCAC
259 CAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGC
*
658709 AAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGCTT-GTGCCTCAAATGAGACAAACA
324 AAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAG-TTCATGCCTCAAATGAGACAAACA
* * * * * *
658773 TGGATTCTAGTAATGATCCTCATTCTTTTTGTGATTAGGTAGC-ACAAACACATTCTCCTTATGA
388 TGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCA-CTATAAACACATTCTCCTCATTA
* *
658837 GAATAAAAGATATTGATGATTTTCT
452 GGATAAATGATATTGATGATTTTCT
* * * * * * *
658862 TTTACATGGAAAA-CTTTTCTCTACCCTATTTTTCTTAAAATAAAAATTCATCCTTTAAAAATGA
1 TTTGCAT-GAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGA
* * * * * * ** * *
658926 CAAGCTTCGATTCCCATAATAGTCTCCATTCCTCCCGAGATTGGGAACCAAGAACACATTTCCTT
65 CAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTT
* * * * *
658991 CATTAGGATGCAAGACATTGATGCTTTGGTGTAGCAAGAAAAGCTTTTCTTTCCACTGTTGTTGA
130 CATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGA
* * * * *
659056 TAGAATCTAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTGATCCTCAATCCTTTC
195 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTC
* * * * * *
659121 AAGATTAGGCACCACAAACATAGTCTTCTTATAAGGATACACGATATTGATGCCTTGGCTCCGCA
260 AGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCA
*
659186 AGAAAGGCTTTC-TCCCACCAATTTTTGTAAAGTCTAAGTCCATGCCTCAAATGAGACAAACATG
325 AGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATG
* * * * * * *
659250 GATTCTAGCAATGATCTTCATTCCTTTTGTGATTAGGCACTATAAACACATTTTCTTTAATAAGA
390 GATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGA
* *
659315 TAAACGATATTGATGATTTCCT
455 TAAATGATATTGATGATTTTCT
* * * *
659337 TTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTCAAAATCTAAATTCATCCCTTAAAAATGAC
1 TTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGAC
* * * * *
659402 AAGCATCGATTCTCGTAACAATCTCCACTCATTTCAAGATTGCGATCCAAGAACACATTCCCTCC
66 AAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTC
* * *
659467 ATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCCCCATTTTTGAT
131 ATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGAT
* * * * * *
659532 AGAATAAAAGTTTATTTCTTAACTAAGACAAACATGAATAGTCACACTAATCCCCATTCTTTTTA
196 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCA
* *
659597 GGATTAGGCACCATAAACATAATCTTCTCATAAGGATACACGATATTGATGCTCTGGTTTCGCAA
261 GGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAA
* * * *
659662 GCATGACTTTCTTCCCACCAATTTTTGTAAAGTCTAACTTCATGCCTCAAATGAGACAAACATGG
326 GAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGG
* * * * *
659727 ATTCTAGTAATGATCTTCATTCATTTTGGGATTAGGTACTATGAACACATTCTCCACATTAGGAA
391 ATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGAT
* * * *
659792 AAAAGATGTTGGTGATTTTTT
456 AAATGATATTGATGATTTTCT
* * * *
659813 TTTGCATGAAAATATTTTCTTTGCCCAATTTTCCTTACAATCAAAATTCATCCCTTAAGTATGAC
1 TTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGAC
* * * * * *
659878 AAGCATCGATTCTCATAACAATCTCCATTCTTTTTAAGATTAGGAACTAAGAAAACATTCTCTTC
66 AAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTC
** * * * *
659943 ATTATAATATATGACATTGATGCTTTGGTATCGCAAGAAAAGTTTTTCTTTCCACTGTTTTTGAT
131 ATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGAT
* **
660008 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATAAATAGTCATGTTAATCCCCATTCTTTTCA
196 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCA
* * * * *
660073 GGATTAGGCACCCTAAAAATAGTCTTCTTATAAGGATACACGATATTGACGCTTTGGTTTCGTAA
261 GGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAA
* * * *
660138 GAAAGGGTTTTTTCCCACCAATTTTTGTAATGTCTAAGTTCCTGCCTCAAATGAGACAAACATGG
326 GAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGG
* *
660203 ATTCTAGTAACGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCTTCATTAGGAT
391 ATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGAT
* * *
660268 CAATGATGTTGAAGA-TTTCT
456 AAATGATATTGATGATTTTCT
* * ** * * * *
660288 TTTGCATGGAAATCTATTCTTTGCATTATTTTCCTTAAAATCATAATTCAACCATGAAATATGAC
1 TTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGAC
* * * * ** * *
660353 AAGCATCAATTCTCGTAACATTCTCTATTATTTTCAAGATTATGATCGAAGAACACATTCCCTTC
66 AAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTC
** * *
660418 AAAAGGATACATGACATT-AGTGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTTCACCGTTTTTGA
131 ATTAGGATACATGACATTGA-TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGA
* ** * * *
660482 TAGATTCAAAGTTTGTCTCTTATGTAAGACAAACTTGAATAGTCAAACTAATCCTCATTCTTTTC
195 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTC
* ** * * * * * * * *
660547 AGGATTAGCCACGGTAAA-AGAGTCTTCTTATTAGGATAGACAATATTGATGATTTAGTTTCACA
260 AGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCA
* * * *
660611 AGAAAGGCTTTCTTCCCACCAATTTTTGTAAACTCTAAG-TCTGTGCCTTAAATAAGACAAACAT
325 AGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTC-ATGCCTCAAATGAGACAAACAT
* *
660675 GGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGTACTAT--ACATATTCTCCTCATTAGG
389 GGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGG
* *
660738 AAAAACGATATTGATGA-TTTCT
454 ATAAATGATATTGATGATTTTCT
* *
660760 TTTGCATGAAAATCTTTTCTTTGCCCTATTTTTCTTAAAATCAAAATTTATCCCTTAAATATGAC
1 TTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGAC
** * * * *
660825 AAGGTTCAATTATCGTAACAATCACCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCTTTC
66 AAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTC
** *
660890 ATTAGGATACAAAACATTGATGCTTTGGTGTCGCAA-AAGAAGTTTTTCTTTCCACCGTTTTTGA
131 ATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAA-AAGCTTTTCTTTCCACCGTTTTTGA
* * * * * * *
660954 TAGAATCAAAGTTTATCTCTTTAATAAGACAAACGTGAATAGTCATACTATTCACCATTTTTTTT
195 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTC
* * * * * *
661019 AGGATTAGGCACCATAAATATAGTCTACTTATAAGGGTAGACAATATTGATGCTTTGGTTTCGCA
260 AGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCA
* ** * * *
661084 AGAAAAGCTTTCTTCCTC-TTAATTTTTGTAAAGTCTAAGTTCATACCTCAAATGAGACCAATAT
325 AGAAAGGCTTTCTTCC-CACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACAT
* * * * * * * *
661148 AGATTCTAGTAATGATCTTTATTCTTTTTGTGATTAGGCAGTA-AAAGCATATTGTCCTCCTTAA
389 GGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA-CACATTCTCCTCATTAG
* *
661212 GATACATGGTATTGATGA-TTTCT
453 GATAAATGATATTGATGATTTTCT
* * * * * * *
661235 TTCCT-CTATGGAAAT-TGTTTCTTTGCCTTATTTTTCTTACAATCAAAGTTTCATCCGTTAAAA
1 TT--TGC-ATGAAAATCT-TTTCTTTGCCCTATTTTCCTTAAAATCAAA-ATTCATCCCTTAAAT
* * * * * * * * *
661298 AAGGCAAGCATTGATTCTCGTAATAGTGTCCATTCTTTTCAAGATTGTGAGCCAAAAACACAGTT
61 ATGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAACCAAGAACACA-TT
* ** * ** * * * *
661363 -GCTTTGTTAGGATATAAAACAGTGATGCTTTGGTGTCGTAAGAAAAACTTTTCTTTTCACCGTT
125 CCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTT
* * * * * *
661427 TTTGATAGAATCAAAGTTTGTTTCTTAAATAAGACAAACATGAATAATTATACAAATCCCTAGTC
190 TTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCA-TT
* * * *
661492 CTTTT-AGGATTAGGTACCACAAACATAGTCTTCTCATAAAGATAAACGATA---A---------
254 CTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGT
* * * *
661544 -T-----G--ATGCTTTCTTCCAACCAATTTTTGTAAAGTCTAAGTTCGTGCTTCAAATGAGACA
319 TTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACA
* * * * *
661601 AATATGGAATCTAGTAATGATC-TCATTCATTTTGGGGTTAGGCACTATAAACACATTCTCTTCA
384 AACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCA
* *
661665 TTACGTTAAATGATATTGATGATTTT-T
449 TTAGGATAAATGATATTGATGATTTTCT
* * * * * *
661692 TTTGCTTGAAAATCTTTTCTTTGTCCAATTTTCCTTAAAATCAAAATTCAACTCTTCAATATGAC
1 TTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGAC
** * * * * * *
661757 AAGTTTTGATTCTCGTAACAGTCTACATTATTTTAAAGATTGGGAACCAAGAACACATTCTCTTC
66 AAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTC
* * * * * * * * *
661822 GTTAGGATGCATAACATTGATGTTTTCGGT-T-GCCAA-AAATGTTTTTCTTTTCATCATTTTTG
131 ATTAGGATACATGACATTGATGCTTT-GGTGTCG-CAAGAAAAGCTTTTCTTTCCACCGTTTTTG
* * * *
661884 ATAGAATCAAAATTTGTCTCTTAAAT-AGTACAAACTTGAATAGTCA-ATCTAATCCCTATTTTT
194 ATAGAATCAAAGTTTGTCTCTTAAATAAG-ACAAACATGAATAGTCATA-CTAATCCCCATTCTT
* * * * ** * *
661947 TTTAGAATTAGCCACCATAAACATAGTCTTCTCATAAAGATACATAATATTGACGATTTGGTTTC
257 TTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTC
* * ** *
662012 ACAAGAAAGGATTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTTAAATGAGACAAAC
322 GCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAAC
* * * *
662077 ATAGATTCTAGTAATGATC-TCAATTCATTTTCTAATTAGGCACTACAAACACATTCTCCTCATT
387 ATGGATTCTAGTAATGATCTTC-ATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCA-T
* *
662141 TA-GAAAAATGATTTTGATGATTTT-T
450 TAGGATAAATGATATTGATGATTTTCT
* * * * * * *
662166 TTTGCATGAAAATCTTTTCCTTGCCCTATTTTTCTTAAATTGAAAATTAATCCTTTATAA-AAGA
1 TTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTA-AATATGA
* * *
662230 CAAGCATTGATTCTTGTAACAGA-CTCCATTCTTTTCATA-ATTGGGAACCAA-AACACATTCCT
65 CAAGCATCGATTCTCGTAACA-ATCTCCATTCTTTTCA-AGATTGGGAACCAAGAACACATTCCC
* * * * *
662292 TTCATTAGGATACATGACATTGATGCTTTAGTGTCACATGAATAGCTTTTCTTTCCACCATTTTT
128 TTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTT
*
662357 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACACTAATCCCCATT-TTT
193 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTT
* * * * * * * * *
662421 ATTAGGAATAGGCATCGTAAGCATAGTCTTCTTACAAGGGTACACGATGTTG-T-CATTTTGGTT
258 -TCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGC--TTTGGTT
* * * * * * *
662484 TTGCTAGAAAGGTTTTCATGCTACCAATTTTTGTAAAGTCTAAGTTTATGCCTCAAATGAGACAA
320 TCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAA
* * * * * * *
662549 ATATGGATTCTAGTAGTGATATTCATCCTTTTTGTGATTAGGCACTATAAACACATTCTCCTTAC
385 ACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCAT
*
662614 TAGGATAAATGATATTGATGATTTTTT
450 TAGGATAAATGATATTGATGATTTTCT
* * *
662641 TTTGCATGAAAATCTTTTCTTTGCCCTATTTT-CTTCAAAATCAAAGTTCATCCCTTAAATAAGG
1 TTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTT-AAAATCAAAATTCATCCCTTAAATATGA
* * * * * * *
662705 TAAGCATGGATTCTCATAACAATCTCCATTCTTTTCCAGATT-GCAATCCTAA-AACACATTTCG
65 CAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAA-CC-AAGAACACATTCCC
* * * * * * *
662768 TTTATTAGGATGCCTGACATTGGTG-TTTGGTGTGGCAAGAAAAGCTTTTCTTTCAACTGTTTTT
128 TTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTT
* * * * * * *
662832 GAAAGAATCAAAGTTTGTCTCTTAAATAAAACAAGCATGAATACTAATGCTAATCCCTATTCTTT
193 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTT
* ** ** * * * *
662897 TCAGAATTAGTTATAATAAACATAGTCTTCTCATAAGAATACATGATATTGACGCTTTGGCTTCG
258 TCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCG
* * * * *
662962 TAAGAAAGGCTTTTTTCCCACCAATTTTTGCAAAGTCCAAGTTCGTGCCTCAAAT-ATGACAAAC
323 CAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGA-GACAAAC
** * * * * * *
663026 AAAGA-T-TAGTAATGATCTTCACTCTTTTTGTGACTAGGCACTATAAATACATTCTCCCCGTTA
387 ATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTA
663089 GGATAAATGATATTGATGATTTTCT
452 GGATAAATGATATTGATGATTTTCT
* **
663114 TTGGCATGAAAATCTTTTC-TT-CCCTATTTTCCTTAAAAT-AAAATTTTGTCCCTTAAATATGA
1 TTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAA-TTCATCCCTTAAATATGA
* * *
663176 CAAGCATCAATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTT
65 CAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTT
* * * * * * * ** **
663241 CATTAAGA-AGCATGGCACTGATGCTTTGGTGTTGCAAAAAAAGGTTTTTTTTTAACTATTTTTG
130 CATTAGGATA-CATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTG
* ** *
663305 ATAGAATCAAAGTTTGTCTTTTAAATAAGACAAATGTGAATAGCCATACTAATCCCCATTCTTTT
194 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTT
* * *
663370 CAGGATTAGGCACCATAAACATAGTCTTCTTATTAGGATAGACGATATTGATGCTTTGGTTTCGC
259 CAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGC
* * * * * * *
663435 AAAAAAGGCTTTCTTCTCC-CTAATTTTTGTGAAGTCTAATTTCATGTCTTAAATAAGACAAACA
324 AAGAAAGGCTTTCTTC-CCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACA
* * * *
663499 TGGA-T-TAGTAATGATTTTCCA-TCATTTTTGTGATTAAGCACTATAAATAAATTCTCCTCATT
388 TGGATTCTAGTAATGATCTT-CATTCA-TTTTGTGATTAGGCACTATAAACACATTCTCCTCATT
* * *
663561 AGGATAAATTAAATTGATGAATTTCT
451 AGGATAAATGATATTGATGATTTTCT
* * *
663587 TTTACATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAA-CAAAAATTCATCCCTTAAATATGA
1 TTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC-AAAATTCATCCCTTAAATATGA
* * * * * * * * * * *
663651 TAAGCATTGATTCTTGTAAGAGTCTCCATTTTTTTTAAGATTGGAAACCAAAAACAC-TTTCTTT
65 CAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTT
* * * * *
663715 CATTAGGATACATGACATTTATGCTTTGGTGTCACAAGAAAAGCTTTTCTATCCACCATTTTTCA
130 CATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGA
** * * *
663780 TAGAATTGAAGTTTATCTCTTAAATAA-AGCAAATATGAATAGTCATACTAATCCCTATTCTTTT
195 TAGAATCAAAGTTTGTCTCTTAAATAAGA-CAAACATGAATAGTCATACTAATCCCCATTCTTTT
* *** * *
663844 CAAGATTAGGCGTAATAAACATAGTCTTCTCATTAGGATACACGATATTGACGCTTTGGTTT--C
259 CAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGC
*
663907 -------G---------CACCAATGTTTGTAAAGTCTAA-TCTCATGCCTCAAATGAGACAAACA
324 AAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGT-TCATGCCTCAAATGAGACAAACA
* * * * * *
663955 TGTATTCTAGTGATGACCTTCATTCATTTTGTGATTAGGCACCATAAACACATTGTCCTTATTAG
388 TGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAG
664020 GATAAATGATATTGATGATTTT-T
453 GATAAATGATATTGATGATTTTCT
* * * *
664043 TTTGCATGAAAATCTTTTCTTTGCCCTCTTTTCCTTAAAATCAAAATTTATCCATTAGATATGAC
1 TTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGAC
* * * * *
664108 AAGCCTTGATTCTCGTAGCAATCTCCATTATTTTCAAGATTGGGAACCAAGAGCACA-TCCTCTT
66 AAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCC-CTT
* * * * ** *
664172 CATTAGGATACATGACACTGATGCTTTGG-GTCGCCAGTAAAGTTTTTCTTTCCA-CAATTTTGT
130 CATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGA
* * * * *
664235 TAGAATCAAAGTTTGTCACTTAAATATGACACACATGAATAGTCATACTAATCCTCATTCCTTTC
195 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTC
* * * * * *
664300 AGGATTAAGCACTATAAACATCGTCTTTTCATAAGGATAGACGATATTGATGCTTTGGTTTTGCA
260 AGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCA
* ** * *
664365 AGAAAGGCTTTCTTCTCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAAACAAACAAG
325 AGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATG
*
664430 GATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACATATTCTCCTCATTAGGA
390 GATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGA
*
664495 AAAATGATATTGATGATTTTCT
455 TAAATGATATTGATGATTTTCT
* * * * * *
664517 TTTGCATGAAAATCTTTTCTTTGCCCTATTTTTCTTAAATTGAAAATTCTTCCTTTAAATAAGAC
1 TTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGAC
* * * * * * *
664582 AAGTACCGATTCTCGTAACAGA-CTCCATTCTTTTCATGATTAGGAACCAAAAACATATTCCTTT
66 AAGCATCGATTCTCGTAACA-ATCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTT
* * * * * * *
664646 TAGTAGGATACATGACATTAATGGTTTGGTGTTGCAAGAATAGCTTTTCTTTTCACCGTTTTTGA
130 CATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGA
* * * *
664711 TAGAATTAAAGTTTATCTCTTAAATAAGACAAAGATGAATAGTCATACTAATCCCCATTCTTTTT
195 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTC
* * * * * *
664776 AGGATTAGGCATCATAAACATAGTCTTCTCATAAGGAAAAACAATATT-ATCACCTTGGTTTCGT
260 AGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGAT-GCTTTGGTTTCG-
* * * *
664840 TAA-AAAGGCTTTCTTCCTACCAATTTTAGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAATA
323 CAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACA
* * * *
664904 TGGATTCTAGTAATGAATGATCTTCA-TCTTTTTTGTGATTAAGCAATATAAACACATTCTCCTT
388 TGGATTCTAG---T-AATGATCTTCATTC-ATTTTGTGATTAGGCACTATAAACACATTCTCCTC
664968 ATTAGGATAAATGATATTGATGATTTTCT
448 ATTAGGATAAATGATATTGATGATTTTCT
* * * * ** * * *
664997 TTTGCATTG-AAATCTTTTCTTTGCCTTATTTTCCTGAAAATCCAAGTTTGTTCCTTAAATAAGG
1 TTTGCA-TGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGA
** * * * * * * *
665061 CAAGTGTGGATTCTCGTAATAGTCTCCATTCTTTTCAAGACT-GCAACCCAAAAACACATTCCTT
65 CAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAA-CCAAGAACACATTCCCT
* * * * * * * ** *
665125 TTATTGGGATGCCA-GACATTGGTTCTTTGGTGTGGTAAGGGAAGCTTTTCTTT-CATCCATTTT
129 TCATTAGGAT-ACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA-CCGTTTT
* * * * * *
665188 TGATAGAGTCAAAGTTTATCTCTTAAATAAGACAAGCATGAATACG-AATGCTAATCCCTATTCT
192 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATA-GTCATACTAATCCCCATTCT
* * * *
665252 TTT-AGGGATTAGGCACAATAAATATAGTCTTCTCATAA-GATACATGATATTGATGCTCTGGTT
256 TTTCA-GGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTT
* * * * * * * *
665315 TCGCAGGAAAGGCTTTTTTCCCTCCAATTTTTGTAATA-TCCAAGCTCGTGCATCAAAT-ATGAT
320 TCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAA-AGTCTAAGTTCATGCCTCAAATGA-GAC
* * * * * *
665378 AAACATGGA-T-TGGTAATGATCTTTATTCGTTTTGTGACTAGGCACTATAAATACATTCTCCCC
383 AAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTC
665441 ATTAGGATAAATGATATTGATGATTTTCT
448 ATTAGGATAAATGATATTGATGATTTTCT
* * * * ** * * *
665470 TTAGCATGGAAATCTTTTATTTGCCCTATTTTTCTTAATTTGAAAATTCATCCTTTAAATAAGAC
1 TTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGAC
** * * *
665535 AAGCATCGATTCTCGTAACAGA-CTCCATTCTTTTCATTATTGGGAACTAAAAACACATTCCTTT
66 AAGCATCGATTCTCGTAACA-ATCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTT
* * * * * *
665599 CTTTAGGATACATTACATTGATGCTTTAGTGTCGCAAGAATAGCTTTTTTTTCCACCATTTTTGA
130 CATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGA
* * ** * * * *
665664 TAGAATAAAAGTTTGCCTCGAAAATCAGACAAACATGAATATTCATAATAATCCCCATTCTTTTT
195 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTC
* * *
665729 AGGATTAGGCACCATAAACATATTTTTCTCATAAGGATACACGATATTG-TCACTTTGGTTTCGC
260 AGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGAT-GCTTTGGTTTCGC
* * * * *
665793 TAGAAAGGCTTTCTTCCTACCAATTTTCGTAAACTCTAAGTTCATGCCTCAAATGAGACAAATAT
324 AAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACAT
* *
665858 GGATTCTAGTAATGATCTTCATCCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGG
389 GGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGG
*
665923 ATAAATTATATTGATGAATTTT-T
454 ATAAATGATATTGATG-ATTTTCT
*
665946 TTTGCAT-AGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATAAAAATTCATCCCTTAAATATGA
1 TTTGCATGA-AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGA
* * * * * * * * * *
666010 TAAGCATCGATTC-CTGTAACATTCTCTAATCTTTTTAAGATTCGAAACTAAGAACA-TTTTCCT
65 CAAGCATCGATTCTC-GTAACAATCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCCT
* * *
666073 TCATTAGTATACATGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTT-TTTCCACCATTTTTG
129 TCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTG
* * * * *
666137 ATAGAATCGAAGTTTATCACTTAAATAAGGCAAACATGAATAGTC-TACTAATCTCCATT-TTTT
194 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTT
* * * * *
666200 CAAGATTAGGCGCCATAAACATAGTCTTCTCTTTAGGATACATGATATTGATGCTTTGGTTTCGC
259 CAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGC
* * * *
666265 AAGAGAGGCCTTCTTCCCACCAATATTTGTAAAGTCTAAGCTCATGCCTCAAATGAGACAAACAT
324 AAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACAT
* * *** * *
666330 TGATTCTAGTAATGATCTTCATTCCTTTTGTGATTAGGTGTTGTAAACACATTCTCCTCATTAGA
389 GGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGG
*
666395 ATAAATGACATTGATGATTTT-T
454 ATAAATGATATTGATGATTTTCT
* * * * *
666417 TTTGCATGAAAATCTTTTCTTTGCCCTGTTATCCTTGAAATCAAAATTCATTCCTTAAATATGGC
1 TTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGAC
* * * ** * * * * *
666482 AAGCTTTGATTCTCCTAGTAGTCTCCATTCTTTTCAAGGTTAGGAACCTAAGAGCATA-TCCTCT
66 AAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAACC-AAGAACACATTCC-CT
* * * * * **
666546 ACTTTAGGATACATGACATTGATGCTTT-GAG-CTACAAGAAAAGTTTTTCTTTCCATAGTTTTT
129 TCATTAGGATACATGACATTGATGCTTTGGTGTC-GCAAGAAAAGCTTTTCTTTCCACCGTTTTT
* * * * *
666609 GTTAGAATCAAAGTTTGTCACTTAAATATGACAAAGAT-AAGTAGTCATACTAATCCCCATTCCT
193 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA-TAGTCATACTAATCCCCATTCTT
* * * * * * *
666673 TTCAGAATTAGGCACTC-TAAATATAGTCTTTTCATAAGGATAGATGATATTGATGTTTTGATTT
257 TTCAGGATTAGGCAC-CATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTT
** * * * * * *
666737 CATAAGAAAAGCTTTCTTCTCACTAATTATTCTAAAGTCTAAGTTCCTGCCTCAAATGAGACAAA
321 CGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAA
* *
666802 CAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCTCATT
386 CATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATT
* *
666867 AGGAAAAATGCTATTGATGATTTTCT
451 AGGATAAATGATATTGATGATTTTCT
* * * * * **
666893 TTTGCATGAAAATCTTTTCTTTGCCCTATTTT-TTTAAATTGAAAATTCATCCTTTAAATAAGGT
1 TTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGAC
* ** * * * *
666957 AAGCATTGATTCTCGTATTAGA-CTCCATTCTTTTTATGATTGGGAACAAAAAACACATT--C--
66 AAGCATCGATTCTCGTAACA-ATCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTT
* * *
667017 C---------C-T--C---G-T--TTTGGTGTCGCAAGAATAGCTTCTCTTTCCATCGTTTTTGA
130 CATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGA
* *
667064 TGGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTT
195 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTC
* * * *
667129 AGGATTAGGCAGCATAAACATAGTCTTCTCATTAGGATAAATGATATTGATG
260 AGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATG
667181 ATTTTCTTTT
Statistics
Matches: 14314, Mismatches: 2719, Indels: 748
0.81 0.15 0.04
Matches are distributed among these distances:
452 12 0.00
453 238 0.02
454 90 0.01
455 148 0.01
456 168 0.01
457 136 0.01
458 86 0.01
460 2 0.00
461 1 0.00
464 1 0.00
465 2 0.00
466 1 0.00
468 4 0.00
469 170 0.01
470 187 0.01
471 196 0.01
472 741 0.05
473 1398 0.10
474 1646 0.11
475 3525 0.25
476 3225 0.23
477 729 0.05
478 411 0.03
479 105 0.01
480 661 0.05
481 14 0.00
485 1 0.00
486 8 0.00
487 1 0.00
488 3 0.00
489 3 0.00
490 6 0.00
491 5 0.00
492 2 0.00
495 3 0.00
496 1 0.00
497 1 0.00
498 2 0.00
499 2 0.00
500 1 0.00
501 1 0.00
502 3 0.00
505 2 0.00
506 7 0.00
507 3 0.00
508 2 0.00
509 3 0.00
510 1 0.00
511 7 0.00
512 1 0.00
516 1 0.00
519 3 0.00
520 201 0.01
521 74 0.01
522 69 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (476 bp):
TTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGAC
AAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTC
ATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGAT
AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCA
GGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAA
GAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGG
ATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGAT
AAATGATATTGATGATTTTCT
Found at i:669239 original size:937 final size:930
Alignment explanation
Indices: 667142--669369 Score: 2627
Period size: 937 Copynumber: 2.4 Consensus size: 930
667132 ATTAGGCAGC
* * *
667142 ATAAACATAGTCTTCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGGAGATCTTTTC
1 ATAAACATATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGT-GAAATCTTTTC
* * * * * * * * **
667207 TTTGCCTTATTTTCCTCAAAATCAAAGTTCGTCCCTTAAGTAAGG-CAAGCATAGGGTCTCGTAA
65 TTTGCCCTATTTTTCTTAAAATAAAAATTCATCCCTTAA-AAAGGACAAGCATCGATTCTCGTAA
* * * * * *
667271 CAATCTCCATTCTTTTTAAGATTGCGAACCAAAAACATATTCCCTTTATTGGGATGCCTGACATT
129 CAATCTCCATTCTTTTTAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATT
* * * * * *
667336 GGTGC-TTAGTGTGGCAAGAAAAGCTTTT-TTTCAACTATTTTTGATAGAATCAAAGTTTGTCTC
194 GATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCATTATTTTTGATAGAATC-AAGTTTATCTC
* * * * *
667399 TTAAATAAGACAAGCATGAATACTAATGCTAATCCCTATTCTTCTTTCAGGATTAGGCACAATAA
258 TTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTC-T-TTTCAGGATTAGGCACAATAA
* * * * *
667464 AGATAGTCTTCTCA-TAAGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCT
321 ACATAGTCTTCTTATTAGGATACATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCT
** * * *
667528 TCCAATTTTTGTAATATCCAAGTTCATGACTCAATTATGTCAAACATGGATTAGTAATTATCTTC
386 TCCAACATTTGTAATATCCAAGTTCATGACTCAATGATGACAAACATGGATTAGTAATGATCTTC
* * * *
667593 ATTCCTTTTGTGACTAGGCGCTATAAATACATTCTACCCATTAAGATAAAAGATATTGATGATTT
451 ATTCATTTTGCGACTAGGCACCATAAATACATTCTACCCATTAAGATAAAAGATATTGATGATTT
* * * **
667658 TCTTTGGTATGGAAATCTTTTCTTCCTATTTTTTTTCAAATAAAAATTCATCCCTTAAATATGAC
516 TCTTTGGCATGAAAATCTTTTCTTCCTACTTTTCCTCAAATAAAAATTCATCCCTTAAATATGAC
* * *
667723 AAGCATCAATTCTCATTACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCTTCG
581 AAGCATCAATTCTCAGTACAGTCTCCATTCTTTTCAAGATTGAGAACCAAGAACACATTCCTTCA
* * * *
667788 TTAGGATGCATGGCATTGAAGCTTTGGTGTCACAAAAAAAGGTTTTTTTCCACCATTTTTGATAG
646 TTAGGATACATGACATTGAAGCTTTAGTGTCACAAAAAAAGCTTTTTTTCCA-CATTTTTGATAG
* * * ** ****
667853 AATGAACGTTTGTCTCTTAAATAAGACAAATGTGAATAGTCATACTATTCCCCATTCTTTTTAGG
710 AATCAAAGTTTGTCACTTAAATAAGACAAACATGAATAGTCATACTATT--CCA-T-GGAATAGG
* * * *
667918 ATCAGTAAACATAGTCTTCTTATTAGGATAGACGATATTGATGCTTTGGTTTTGCAAAAAAAGCT
771 ATCAGTAAACATAGTCTTCTTATAAGAATAGACGATATTGATGCTTAGGTTTCGCAAAAAAAGCT
* ** * *
667983 TTCTTCTCCCTAATTTTTGTAAAGTCTAATTTCGTGCCTTAAATGAGACAAACATGGATTAGTTT
836 TTCTTCTCCCTAATTTTTGTAAAGTCTAAGTTCGTGCCACAAATGAGACAAACAAGGATTAGTGT
* * *
668048 GATTTTTAATCATTTTTGTGATTAGGCACT
901 GATCTTCAATCATTTTTGTGATAAGGCACT
* * *
668078 ATAAACATATTCTCCTCTTTAGGATAAATTATATTGATAATTTTCTTTTGCGTGAAATCTTTTCT
1 ATAAACATATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAATCTTTTCT
* * * * *
668143 TTGCCCTA-TTTTCTTTAAAATAAAAATTCATCCCTTAAATATGATAAGCATCAATTCTTGTAAC
66 TTGCCCTATTTTTC-TTAAAATAAAAATTCATCCCTTAAAAAGGACAAGCATCGATTCTCGTAAC
* * *
668207 AATCTCCATTCTTTTTAAGATTGGAAACCATAAACAC-TTTCCTTCATTAGGATACATGACATTG
130 AATCTCCATTCTTTTTAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTG
* * *
668271 ATGCTTTGGTGTCGTAGAGAACAGCTTTTCTTTCCTTTATTTTTGATAGAATCGAAGTTTATCTC
195 ATGCTTTGGTGTCGCA-AGAAAAGCTTTTCTTTCCATTATTTTTGATAGAATC-AAGTTTATCTC
* * * * *
668336 TTAAATAAGATAAATATGAATAGTCCTACTAATCCCCATTCTTTTCAAGATTGGGCACAATAAAC
258 TTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACAATAAAC
*
668401 ATAGTCTTCTTATTAGGATACATGATATTGATGCTTTGGTTTCACAAGAGAGGCTTTCTTCCTAT
323 ATAGTCTTCTTATTAGGATACATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCT-T
* *
668466 -CAACATTTGTAA-AGTCTAAGTTCATGCCTCAAATGA-GACAAACAGTGGATTCTAGTAATGAT
387 CCAACATTTGTAATA-TCCAAGTTCATGACTC-AATGATGACAAACA-TGGA-T-TAGTAATGAT
* * * * *
668528 CTTTATTCATTTTGCGATTAGGCACCATAAATACATTCT-CCTTATTAGGATAAATGATATTGAT
447 CTTCATTCATTTTGCGACTAGGCACCATAAATACATTCTACC-CATTAAGATAAAAGATATTGAT
* *
668592 GATTTT-TTT-GCATGAAAATCTTTTCTTTGCCCT-CTTTTCCTCAAAATCAAAATTTATCCCTT
511 GATTTTCTTTGGCATGAAAATCTTTTC-TT--CCTACTTTTCCTC-AAATAAAAATTCATCCCTT
* ** * *
668654 AAATATGACAAGCTTTGATTCTC-GTAGCAGTCTCCTTTCTTTTCAAGATTGAGAACCTAAGAGC
572 AAATATGACAAGCATCAATTCTCAGTA-CAGTCTCCATTCTTTTCAAGATTGAGAACC-AAGAAC
* * * *
668718 ACA-TCCTTTTCATTAGGATACATGACATTGATGCTTTAG-GTCGCAAGAATAGCTTTTTTATCT
635 ACATTCC--TTCATTAGGATACATGACATTGAAGCTTTAGTGTCACAAAAAAAGCTTTTTT-TC-
* *
668781 CA-ATTTTTGTTAGAATCAAAGTTTGTCACTTAAATATGACAAACATGAATAGTCATACT-TT-C
696 CACATTTTTGATAGAATCAAAGTTTGTCACTTAAATAAGACAAACATGAATAGTCATACTATTCC
* *
668843 A-GGAATAGGCA-CTA-TAAACATAGTCTTCTCTA-AAGAATGGACGATATTGATTCTTAGGTTT
761 ATGGAATAGG-ATC-AGTAAACATAGTCTTCT-TATAAGAATAGACGATATTGATGCTTAGGTTT
* * *
668904 CGCGATAAAGGCTTTCTTCTCACC-AATTTTTGTAAAGTCTAAGTTCGTGCCACAAATGAGACAA
823 CGCAAAAAAAGCTTTCTTCTC-CCTAATTTTTGTAAAGTCTAAGTTCGTGCCACAAATGAGACAA
*
668968 ACAAGGATTCTAGTAGTGATCTTCATTCA-TTTTGTGATAAGGCACT
887 ACAAGGA-T-TAGT-GTGATCTTCAATCATTTTTGTGATAAGGCACT
* * *
669014 ATAAACATATTCTCCTCATTAAGAAAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTC
1 ATAAACATATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTG-AAATCTTTTC
* * * *
669079 TTTGCCCTATTTTTCTTAAATTAAAAATTCATCCTTTAAAAAGGACAAGTATCGATTCTCGTTAC
65 TTTGCCCTATTTTTCTTAAAATAAAAATTCATCCCTTAAAAAGGACAAGCATCGATTCTCGTAAC
* * *
669144 AGA-CTCTATTCTTTTCATGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATT
130 A-ATCTCCATTCTTTTTAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATT
* * * ** *
669208 GATGCTTTGGTGTTGCAAGAATAGTTTTTCTTTCCATCGTTTTTGATAGAATCAAGGTTTCTCTC
194 GATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCATTATTTTTGATAGAATCAA-GTTTATCTC
* * *
669273 TTAAATAAGACAAACATGAATGGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAAC
258 TTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACAATAAAC
*
669338 ATAGTCTTCTTATTAGGATAAATGATATTGAT
323 ATAGTCTTCTTATTAGGATACATGATATTGAT
669370 AGAATAAACA
Statistics
Matches: 1095, Mismatches: 162, Indels: 69
0.83 0.12 0.05
Matches are distributed among these distances:
934 135 0.12
935 132 0.12
936 207 0.19
937 315 0.29
938 54 0.05
939 75 0.07
940 73 0.07
941 74 0.07
942 28 0.03
943 2 0.00
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (930 bp):
ATAAACATATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAATCTTTTCT
TTGCCCTATTTTTCTTAAAATAAAAATTCATCCCTTAAAAAGGACAAGCATCGATTCTCGTAACA
ATCTCCATTCTTTTTAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGA
TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCATTATTTTTGATAGAATCAAGTTTATCTCTTA
AATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACAATAAACATA
GTCTTCTTATTAGGATACATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCTTCCAA
CATTTGTAATATCCAAGTTCATGACTCAATGATGACAAACATGGATTAGTAATGATCTTCATTCA
TTTTGCGACTAGGCACCATAAATACATTCTACCCATTAAGATAAAAGATATTGATGATTTTCTTT
GGCATGAAAATCTTTTCTTCCTACTTTTCCTCAAATAAAAATTCATCCCTTAAATATGACAAGCA
TCAATTCTCAGTACAGTCTCCATTCTTTTCAAGATTGAGAACCAAGAACACATTCCTTCATTAGG
ATACATGACATTGAAGCTTTAGTGTCACAAAAAAAGCTTTTTTTCCACATTTTTGATAGAATCAA
AGTTTGTCACTTAAATAAGACAAACATGAATAGTCATACTATTCCATGGAATAGGATCAGTAAAC
ATAGTCTTCTTATAAGAATAGACGATATTGATGCTTAGGTTTCGCAAAAAAAGCTTTCTTCTCCC
TAATTTTTGTAAAGTCTAAGTTCGTGCCACAAATGAGACAAACAAGGATTAGTGTGATCTTCAAT
CATTTTTGTGATAAGGCACT
Found at i:673132 original size:19 final size:19
Alignment explanation
Indices: 673096--673134 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
673086 AATACGCTCC
* * *
673096 TATGTATCGATTCTTGCAT
1 TATGTATCAATACATGCAT
673115 TATGTATCAATACATGCAT
1 TATGTATCAATACATGCAT
673134 T
1 T
673135 TGAAATTTAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.28, C:0.15, G:0.13, T:0.44
Consensus pattern (19 bp):
TATGTATCAATACATGCAT
Found at i:673202 original size:20 final size:20
Alignment explanation
Indices: 673159--673212 Score: 65
Period size: 20 Copynumber: 2.7 Consensus size: 20
673149 GTTGGGCTCA
*
673159 ATGTATCGATTCAATGCACT
1 ATGTATCGATACAATGCACT
*
673179 ATGTATCGATACAATTCA-T
1 ATGTATCGATACAATGCACT
*
673198 CATGTATTGATACAA
1 -ATGTATCGATACAA
673213 AATGAGTTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
19 1 0.03
20 29 0.97
ACGTcount: A:0.35, C:0.17, G:0.13, T:0.35
Consensus pattern (20 bp):
ATGTATCGATACAATGCACT
Found at i:673295 original size:32 final size:33
Alignment explanation
Indices: 673259--673321 Score: 92
Period size: 32 Copynumber: 1.9 Consensus size: 33
673249 TTAACTCAAT
673259 ATGTATCGATACCAAG-AACATGCATCGATATA
1 ATGTATCGATACCAAGCAACATGCATCGATATA
* * *
673291 ATGTATCGATACTAAGCAATATGTATCGATA
1 ATGTATCGATACCAAGCAACATGCATCGATA
673322 CGTCTTGGTG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 15 0.56
33 12 0.44
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.29
Consensus pattern (33 bp):
ATGTATCGATACCAAGCAACATGCATCGATATA
Found at i:677194 original size:465 final size:466
Alignment explanation
Indices: 675952--678233 Score: 3884
Period size: 466 Copynumber: 4.9 Consensus size: 466
675942 TAGTACCCAC
* **
675952 GTATCGATACATTTTATAATGTATCGATACATTTTGGGAATTTCCAAAAGTATCAACGTTAGTTA
1 GTATCGATATATTGAATAATGTATCGATACATTTTGGGAATTTCCAAAAGTATCAACGTTAGTTA
*
676017 GCAAAAACTCTCACACTATCAACCCTATATCGAATAAATCAAACACAATTCATTCAACAACATAT
66 GCAAAAACTCTCACCCTATCAACCCTATATCGAATAAATCAAACACAATTCATTCAACAACATAT
*
676082 GTAAACAACAAATCCATCAACAATTAAGCACAATGCAACATTAATAATCACAAAATCACAAGATC
131 TTAAACAACAAATCCATCAACAATTAAGCACAATGCAACATTAATAATCACAAAATCACAAGATC
*
676147 ATTTAAACAAAACATCAAAAGTG-AGACAAAAATTTCATGTGACCAAAAACATGCATATTTGGCA
196 ATTCAAACAAAACATCAAAAGTGCA-ACAAAAATTTCATGTGACCAAAAACATGCATATTTGGCA
* *
676211 TTATAAACATATTTGGTCATCCAACATAATTTTTCAGAAAATGAATGATAAAGACACGAATAACA
260 TTATGAACATATTTGGTCATCCAACATAATTTTTCAGAAAATGAATGATAAAGACATGAATAACA
*
676276 AAAGTTTGAGAGATATCATCAAAGGTATATAAACTTGGCAGAAACATAAAATCAAGGTGCATTCA
325 TAAGTTTGAGAGATATCATCAAAGGTATATAAACTTGGCAGAAACATAAAATCAAGGTGCATTCA
* * *
676341 TTAGGCCAAGTTCTCTTATAATGGTGGAAAGCATCGATACATTTTATAACGTATCGACATATCTG
390 TTAGGCCAAGTTCTCTTATAATGGTGCAAAGTATCGATACATTTTATAATGTATCGACATATCTG
*
676406 GGTTTTCCAAAA
455 GGTTTTCCAGAA
* *
676418 GTATCGATATATTGAATAATGTATCGATACATTTCGGGAATTTCCATAAGTATCAACGTTAGTTA
1 GTATCGATATATTGAATAATGTATCGATACATTTTGGGAATTTCCAAAAGTATCAACGTTAGTTA
* *
676483 GCAAAAACTCTCACCCTATCAACCCTATATCGAGTAAATCAAACATAATTCATTCAACAACATAT
66 GCAAAAACTCTCACCCTATCAACCCTATATCGAATAAATCAAACACAATTCATTCAACAACATAT
* * *
676548 TTAAACAACAAATCCGTCAACAATTAAGCATAATGCAGCATTAATAATCACAAAATCACAAGATC
131 TTAAACAACAAATCCATCAACAATTAAGCACAATGCAACATTAATAATCACAAAATCACAAGATC
676613 ATTCAAACAAAACATCAAAAGTGCAACAAAAATTTCATGTGACCAAAAACATGCATATTTGGCAT
196 ATTCAAACAAAACATCAAAAGTGCAACAAAAATTTCATGTGACCAAAAACATGCATATTTGGCAT
*
676678 TATGAACATATTTGATCATCCAACATAATTTTTCAGAAAATGAATGATAAAGACATGAATAACAT
261 TATGAACATATTTGGTCATCCAACATAATTTTTCAGAAAATGAATGATAAAGACATGAATAACAT
676743 AAGTTTGAGAGATATCATCAAAGGTATATAAACTTGGCAGAAACATAAAATCAAGGTGCATTCAT
326 AAGTTTGAGAGATATCATCAAAGGTATATAAACTTGGCAGAAACATAAAATCAAGGTGCATTCAT
* *
676808 TAGGCCAAGTTCTCTTATAATGGTGCGAAGTATCGATACATTTTATAATGTATCGACATATCTAG
391 TAGGCCAAGTTCTCTTATAATGGTGCAAAGTATCGATACATTTTATAATGTATCGACATATCTGG
676873 GTTTTCCAGAA
456 GTTTTCCAGAA
* * *
676884 GTATCGATATATTGAATAATGTATCGACACATTTTGGGAATTTCCAAAAGTATTAACGTTTGTTA
1 GTATCGATATATTGAATAATGTATCGATACATTTTGGGAATTTCCAAAAGTATCAACGTTAGTTA
*
676949 GC-AAAACTCTCACCCTATCAACCCTATATCGAATAAATCAAACATAATTCATTCAACAACATAT
66 GCAAAAACTCTCACCCTATCAACCCTATATCGAATAAATCAAACACAATTCATTCAACAACATAT
*
677013 TTAAACAACAAATCCATCAACAATTAAGCACAATGCAACATTAATAATCAGAAAATCACAAGATC
131 TTAAACAACAAATCCATCAACAATTAAGCACAATGCAACATTAATAATCACAAAATCACAAGATC
* * *
677078 AATCAAACAAAACATCAAAACTACAACAAAAATTTCATGTGACCAAAAACATGCATATTTGGCAT
196 ATTCAAACAAAACATCAAAAGTGCAACAAAAATTTCATGTGACCAAAAACATGCATATTTGGCAT
677143 TATGAACATATTTGGTCATCCAACATAATTTTTCAGAAAATGAATGATAAAGACATGAATAACAT
261 TATGAACATATTTGGTCATCCAACATAATTTTTCAGAAAATGAATGATAAAGACATGAATAACAT
* * *
677208 AATTTTGACAGATATCATCAAAGGTATATAAACATGGCAGAAACATAAAATCAAGGTGCATTCAT
326 AAGTTTGAGAGATATCATCAAAGGTATATAAACTTGGCAGAAACATAAAATCAAGGTGCATTCAT
* * * *
677273 TAGGCCAAGTTCTTTTATAATGGTGCAAAATACCGATACATTTTATAATGTATCGATATATCTGG
391 TAGGCCAAGTTCTCTTATAATGGTGCAAAGTATCGATACATTTTATAATGTATCGACATATCTGG
677338 GTTTTCCAGAA
456 GTTTTCCAGAA
*
677349 GTATAGATATATTGAATAATGTATCGATACATTTTGGGAATTTCCAAAAGTATCAACGTTAGTTA
1 GTATCGATATATTGAATAATGTATCGATACATTTTGGGAATTTCCAAAAGTATCAACGTTAGTTA
* * * *
677414 GCAAAAACTCTTACCCAATCAACCCTATATCGAATAAATCAATCACAATTCATTCAACAACATAG
66 GCAAAAACTCTCACCCTATCAACCCTATATCGAATAAATCAAACACAATTCATTCAACAACATAT
* *
677479 TTAAACAACAAATCCATCAACAATTAAGCACAATGCAAGATTAATAATTACAAAATCACAAGATC
131 TTAAACAACAAATCCATCAACAATTAAGCACAATGCAACATTAATAATCACAAAATCACAAGATC
* *
677544 CTTCAAACAAAACATCAAAAGTGCAACAAAAATTTCATGCGACCAAAAACATGCATATTTGGCAT
196 ATTCAAACAAAACATCAAAAGTGCAACAAAAATTTCATGTGACCAAAAACATGCATATTTGGCAT
* * * * *
677609 TATGAACATATTTGGTCGTCCAACATAATTTTTCAGAAAATGAATGAGAAAGATAAGAATAACAA
261 TATGAACATATTTGGTCATCCAACATAATTTTTCAGAAAATGAATGATAAAGACATGAATAACAT
* *
677674 AAGTTTGAGAGATATCATTAAAGGTATATAAACTTGGCAGAAACATAAAATCAAGGTGCATTGAT
326 AAGTTTGAGAGATATCATCAAAGGTATATAAACTTGGCAGAAACATAAAATCAAGGTGCATTCAT
* * * *
677739 TACGCCAAGTTCTCTTTTAATGGTGCAAAGTATCGATACATTTTATAATGTATCGATACATCTGG
391 TAGGCCAAGTTCTCTTATAATGGTGCAAAGTATCGATACATTTTATAATGTATCGACATATCTGG
* *
677804 GTTTTCTAGAT
456 GTTTTCCAGAA
* * * *
677815 GTATCGATACATTGAACAATGTATCGATACATTTTGGGTATTTCCAAAAGTATGAACGTTAGTTA
1 GTATCGATATATTGAATAATGTATCGATACATTTTGGGAATTTCCAAAAGTATCAACGTTAGTTA
* * *
677880 GCAAAAACTCTCAACCTATCAACCCTATATCAAAAAAATCAAACACAATTCATTCAACAACATAT
66 GCAAAAACTCTCACCCTATCAACCCTATATCGAATAAATCAAACACAATTCATTCAACAACATAT
677945 TTAAACAACAAATCCATCAACAATTAAGCACAATGCAACATTAATAATCACAAAATCACAAGATC
131 TTAAACAACAAATCCATCAACAATTAAGCACAATGCAACATTAATAATCACAAAATCACAAGATC
* * * * *
678010 ATTTAAACAAAACTTCAAAAGTGCAATAAAAATTTCATGTGACCAAAAACATGCGTAATTGGCAT
196 ATTCAAACAAAACATCAAAAGTGCAACAAAAATTTCATGTGACCAAAAACATGCATATTTGGCAT
678075 TATGAACATATTTGGTCATCCAACATAATTTTTCAGAAAATGAATGATAAAGACATGAATAACAT
261 TATGAACATATTTGGTCATCCAACATAATTTTTCAGAAAATGAATGATAAAGACATGAATAACAT
678140 AAGTTTGAGAGATATCATCAAAGGTATATAAACTTGGCAGAAACATAAAATCAAGGTGCATTCAT
326 AAGTTTGAGAGATATCATCAAAGGTATATAAACTTGGCAGAAACATAAAATCAAGGTGCATTCAT
*
678205 TAGGCCAAGTTCTCTTCTAATGGTGCAAA
391 TAGGCCAAGTTCTCTTATAATGGTGCAAA
678234 ATCTATTTTG
Statistics
Matches: 1703, Mismatches: 111, Indels: 4
0.94 0.06 0.00
Matches are distributed among these distances:
465 443 0.26
466 1259 0.74
467 1 0.00
ACGTcount: A:0.43, C:0.17, G:0.12, T:0.28
Consensus pattern (466 bp):
GTATCGATATATTGAATAATGTATCGATACATTTTGGGAATTTCCAAAAGTATCAACGTTAGTTA
GCAAAAACTCTCACCCTATCAACCCTATATCGAATAAATCAAACACAATTCATTCAACAACATAT
TTAAACAACAAATCCATCAACAATTAAGCACAATGCAACATTAATAATCACAAAATCACAAGATC
ATTCAAACAAAACATCAAAAGTGCAACAAAAATTTCATGTGACCAAAAACATGCATATTTGGCAT
TATGAACATATTTGGTCATCCAACATAATTTTTCAGAAAATGAATGATAAAGACATGAATAACAT
AAGTTTGAGAGATATCATCAAAGGTATATAAACTTGGCAGAAACATAAAATCAAGGTGCATTCAT
TAGGCCAAGTTCTCTTATAATGGTGCAAAGTATCGATACATTTTATAATGTATCGACATATCTGG
GTTTTCCAGAA
Found at i:677793 original size:20 final size:20
Alignment explanation
Indices: 677768--677849 Score: 65
Period size: 20 Copynumber: 3.8 Consensus size: 20
677758 ATGGTGCAAA
677768 GTATCGATACATTTTATAAT
1 GTATCGATACATTTTATAAT
*
677788 GTATCGATACATCTGGGTTTTCTAGAT
1 GTATCGATACA------TTTTATA-AT
** *
677815 GTATCGATACATTGAACAAT
1 GTATCGATACATTTTATAAT
677835 GTATCGATACATTTT
1 GTATCGATACATTTT
677850 GGGTATTTCC
Statistics
Matches: 48, Mismatches: 7, Indels: 14
0.70 0.10 0.20
Matches are distributed among these distances:
20 26 0.54
21 3 0.06
26 6 0.12
27 13 0.27
ACGTcount: A:0.30, C:0.13, G:0.16, T:0.40
Consensus pattern (20 bp):
GTATCGATACATTTTATAAT
Found at i:677822 original size:931 final size:932
Alignment explanation
Indices: 675952--678235 Score: 3899
Period size: 931 Copynumber: 2.5 Consensus size: 932
675942 TAGTACCCAC
**
675952 GTATCGATACATTTTATAATGTATCGATACATTTTGGGAATTTCCAAAAGTATCAACGTTAGTTA
1 GTATCGATACATTGAATAATGTATCGATACATTTTGGGAATTTCCAAAAGTATCAACGTTAGTTA
*
676017 GCAAAAACTCTCACACTATCAACCCTATATCGAATAAATCAAACACAATTCATTCAACAACATAT
66 GCAAAAACTCTCACCCTATCAACCCTATATCGAATAAATCAAACACAATTCATTCAACAACATAT
*
676082 GTAAACAACAAATCCATCAACAATTAAGCACAATGCAACATTAATAATCACAAAATCACAAGATC
131 TTAAACAACAAATCCATCAACAATTAAGCACAATGCAACATTAATAATCACAAAATCACAAGATC
*
676147 ATTTAAACAAAACATCAAAAGTGA-GACAAAAATTTCATGTGACCAAAAACATGCATATTTGGCA
196 ATTTAAACAAAACATCAAAAGT-ACAACAAAAATTTCATGTGACCAAAAACATGCATATTTGGCA
* *
676211 TTATAAACATATTTGGTCATCCAACATAATTTTTCAGAAAATGAATGATAAAGACACGAATAACA
260 TTATGAACATATTTGGTCATCCAACATAATTTTTCAGAAAATGAATGATAAAGACATGAATAACA
*
676276 AAAGTTTGAGAGATATCATCAAAGGTATATAAACTTGGCAGAAACATAAAATCAAGGTGCATTCA
325 TAAGTTTGAGAGATATCATCAAAGGTATATAAACTTGGCAGAAACATAAAATCAAGGTGCATTCA
* ** *
676341 TTAGGCCAAGTTCTCTTATAATGGTGGAAAGCATCGATACATTTTATAACGTATCGACATATCTG
390 TTAGGCCAAGTTCTCTTATAATGGTGCAAAATACCGATACATTTTATAACGTATCGACATATCTG
* *
676406 GGTTTTCCAAAAGTATCGATATATTGAATAATGTATCGATACATTTCGGGAATTTCCATAAGTAT
455 GGTTTTCCAAAAGTATAGATATATTGAATAATGTATCGATACATTTCGGGAATTTCCAAAAGTAT
* * *
676471 CAACGTTAGTTAGCAAAAACTCTCACCCTATCAACCCTATATCGAGTAAATCAAACATAATTCAT
520 CAACGTTAGTTAGCAAAAACTCTCACCCAATCAACCCTATATCGAATAAATCAAACACAATTCAT
* * *
676536 TCAACAACATATTTAAACAACAAATCCGTCAACAATTAAGCATAATGCAGCATTAATAATCACAA
585 TCAACAACATAGTTAAACAACAAATCCATCAACAATTAAGCACAATGCAGCATTAATAATCACAA
*
676601 AATCACAAGATCATTCAAACAAAACATCAAAAGTGCAACAAAAATTTCATGTGACCAAAAACATG
650 AATCACAAGATCATTCAAACAAAACATCAAAAGTGCAACAAAAATTTCATGCGACCAAAAACATG
*
676666 CATATTTGGCATTATGAACATATTTGATCATCCAACATAATTTTTCAGAAAATGAATGATAAAGA
715 CATATTTGGCATTATGAACATATTTGATCATCCAACATAATTTTTCAGAAAATGAATGAGAAAGA
* *
676731 CATGAATAACATAAGTTTGAGAGATATCATCAAAGGTATATAAACTTGGCAGAAACATAAAATCA
780 CAAGAATAACAAAAGTTTGAGAGATATCATCAAAGGTATATAAACTTGGCAGAAACATAAAATCA
* *
676796 AGGTGCATTCATTAGGCCAAGTTCTCTTATAATGGTGCGAAGTATCGATACATTTTATAATGTAT
845 AGGTGCATTCATTACGCCAAGTTCTCTTATAATGGTGCAAAGTATCGATACATTTTATAATGTAT
*
676861 CGACATATCTAGGTTTTCCAGAA
910 CGACACATCTAGGTTTTCCAGAA
* * * *
676884 GTATCGATATATTGAATAATGTATCGACACATTTTGGGAATTTCCAAAAGTATTAACGTTTGTTA
1 GTATCGATACATTGAATAATGTATCGATACATTTTGGGAATTTCCAAAAGTATCAACGTTAGTTA
*
676949 GC-AAAACTCTCACCCTATCAACCCTATATCGAATAAATCAAACATAATTCATTCAACAACATAT
66 GCAAAAACTCTCACCCTATCAACCCTATATCGAATAAATCAAACACAATTCATTCAACAACATAT
*
677013 TTAAACAACAAATCCATCAACAATTAAGCACAATGCAACATTAATAATCAGAAAATCACAAGATC
131 TTAAACAACAAATCCATCAACAATTAAGCACAATGCAACATTAATAATCACAAAATCACAAGATC
* * *
677078 AATCAAACAAAACATCAAAACTACAACAAAAATTTCATGTGACCAAAAACATGCATATTTGGCAT
196 ATTTAAACAAAACATCAAAAGTACAACAAAAATTTCATGTGACCAAAAACATGCATATTTGGCAT
677143 TATGAACATATTTGGTCATCCAACATAATTTTTCAGAAAATGAATGATAAAGACATGAATAACAT
261 TATGAACATATTTGGTCATCCAACATAATTTTTCAGAAAATGAATGATAAAGACATGAATAACAT
* * *
677208 AATTTTGACAGATATCATCAAAGGTATATAAACATGGCAGAAACATAAAATCAAGGTGCATTCAT
326 AAGTTTGAGAGATATCATCAAAGGTATATAAACTTGGCAGAAACATAAAATCAAGGTGCATTCAT
* * *
677273 TAGGCCAAGTTCTTTTATAATGGTGCAAAATACCGATACATTTTATAATGTATCGATATATCTGG
391 TAGGCCAAGTTCTCTTATAATGGTGCAAAATACCGATACATTTTATAACGTATCGACATATCTGG
* *
677338 GTTTTCCAGAAGTATAGATATATTGAATAATGTATCGATACATTTTGGGAATTTCCAAAAGTATC
456 GTTTTCCAAAAGTATAGATATATTGAATAATGTATCGATACATTTCGGGAATTTCCAAAAGTATC
* *
677403 AACGTTAGTTAGCAAAAACTCTTACCCAATCAACCCTATATCGAATAAATCAATCACAATTCATT
521 AACGTTAGTTAGCAAAAACTCTCACCCAATCAACCCTATATCGAATAAATCAAACACAATTCATT
*
677468 CAACAACATAGTTAAACAACAAATCCATCAACAATTAAGCACAATGCAAG-ATTAATAATTACAA
586 CAACAACATAGTTAAACAACAAATCCATCAACAATTAAGCACAATGC-AGCATTAATAATCACAA
*
677532 AATCACAAGATCCTTCAAACAAAACATCAAAAGTGCAACAAAAATTTCATGCGACCAAAAACATG
650 AATCACAAGATCATTCAAACAAAACATCAAAAGTGCAACAAAAATTTCATGCGACCAAAAACATG
* *
677597 CATATTTGGCATTATGAACATATTTGGTCGTCCAACATAATTTTTCAGAAAATGAATGAGAAAGA
715 CATATTTGGCATTATGAACATATTTGATCATCCAACATAATTTTTCAGAAAATGAATGAGAAAGA
* *
677662 TAAGAATAACAAAAGTTTGAGAGATATCATTAAAGGTATATAAACTTGGCAGAAACATAAAATCA
780 CAAGAATAACAAAAGTTTGAGAGATATCATCAAAGGTATATAAACTTGGCAGAAACATAAAATCA
* *
677727 AGGTGCATTGATTACGCCAAGTTCTCTTTTAATGGTGCAAAGTATCGATACATTTTATAATGTAT
845 AGGTGCATTCATTACGCCAAGTTCTCTTATAATGGTGCAAAGTATCGATACATTTTATAATGTAT
* * * *
677792 CGATACATCTGGGTTTTCTAGAT
910 CGACACATCTAGGTTTTCCAGAA
* * *
677815 GTATCGATACATTGAACAATGTATCGATACATTTTGGGTATTTCCAAAAGTATGAACGTTAGTTA
1 GTATCGATACATTGAATAATGTATCGATACATTTTGGGAATTTCCAAAAGTATCAACGTTAGTTA
* * *
677880 GCAAAAACTCTCAACCTATCAACCCTATATCAAAAAAATCAAACACAATTCATTCAACAACATAT
66 GCAAAAACTCTCACCCTATCAACCCTATATCGAATAAATCAAACACAATTCATTCAACAACATAT
677945 TTAAACAACAAATCCATCAACAATTAAGCACAATGCAACATTAATAATCACAAAATCACAAGATC
131 TTAAACAACAAATCCATCAACAATTAAGCACAATGCAACATTAATAATCACAAAATCACAAGATC
* * * * *
678010 ATTTAAACAAAACTTCAAAAGTGCAATAAAAATTTCATGTGACCAAAAACATGCGTAATTGGCAT
196 ATTTAAACAAAACATCAAAAGTACAACAAAAATTTCATGTGACCAAAAACATGCATATTTGGCAT
678075 TATGAACATATTTGGTCATCCAACATAATTTTTCAGAAAATGAATGATAAAGACATGAATAACAT
261 TATGAACATATTTGGTCATCCAACATAATTTTTCAGAAAATGAATGATAAAGACATGAATAACAT
678140 AAGTTTGAGAGATATCATCAAAGGTATATAAACTTGGCAGAAACATAAAATCAAGGTGCATTCAT
326 AAGTTTGAGAGATATCATCAAAGGTATATAAACTTGGCAGAAACATAAAATCAAGGTGCATTCAT
*
678205 TAGGCCAAGTTCTCTTCTAATGGTGCAAAAT
391 TAGGCCAAGTTCTCTTATAATGGTGCAAAAT
678236 CTATTTTGGT
Statistics
Matches: 1267, Mismatches: 82, Indels: 6
0.94 0.06 0.00
Matches are distributed among these distances:
930 1 0.00
931 868 0.69
932 398 0.31
ACGTcount: A:0.43, C:0.17, G:0.12, T:0.28
Consensus pattern (932 bp):
GTATCGATACATTGAATAATGTATCGATACATTTTGGGAATTTCCAAAAGTATCAACGTTAGTTA
GCAAAAACTCTCACCCTATCAACCCTATATCGAATAAATCAAACACAATTCATTCAACAACATAT
TTAAACAACAAATCCATCAACAATTAAGCACAATGCAACATTAATAATCACAAAATCACAAGATC
ATTTAAACAAAACATCAAAAGTACAACAAAAATTTCATGTGACCAAAAACATGCATATTTGGCAT
TATGAACATATTTGGTCATCCAACATAATTTTTCAGAAAATGAATGATAAAGACATGAATAACAT
AAGTTTGAGAGATATCATCAAAGGTATATAAACTTGGCAGAAACATAAAATCAAGGTGCATTCAT
TAGGCCAAGTTCTCTTATAATGGTGCAAAATACCGATACATTTTATAACGTATCGACATATCTGG
GTTTTCCAAAAGTATAGATATATTGAATAATGTATCGATACATTTCGGGAATTTCCAAAAGTATC
AACGTTAGTTAGCAAAAACTCTCACCCAATCAACCCTATATCGAATAAATCAAACACAATTCATT
CAACAACATAGTTAAACAACAAATCCATCAACAATTAAGCACAATGCAGCATTAATAATCACAAA
ATCACAAGATCATTCAAACAAAACATCAAAAGTGCAACAAAAATTTCATGCGACCAAAAACATGC
ATATTTGGCATTATGAACATATTTGATCATCCAACATAATTTTTCAGAAAATGAATGAGAAAGAC
AAGAATAACAAAAGTTTGAGAGATATCATCAAAGGTATATAAACTTGGCAGAAACATAAAATCAA
GGTGCATTCATTACGCCAAGTTCTCTTATAATGGTGCAAAGTATCGATACATTTTATAATGTATC
GACACATCTAGGTTTTCCAGAA
Found at i:681179 original size:22 final size:22
Alignment explanation
Indices: 681154--681198 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
681144 TAACACATCT
681154 ACCTTCTTTTGATTTAATCTCC
1 ACCTTCTTTTGATTTAATCTCC
681176 ACCTTCTTTTGATTTAATCTCC
1 ACCTTCTTTTGATTTAATCTCC
681198 A
1 A
681199 AGAATAAGCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.20, C:0.27, G:0.04, T:0.49
Consensus pattern (22 bp):
ACCTTCTTTTGATTTAATCTCC
Found at i:683964 original size:13 final size:13
Alignment explanation
Indices: 683946--683970 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
683936 TACCAAGAAC
683946 ATGTATCGATACA
1 ATGTATCGATACA
683959 ATGTATCGATAC
1 ATGTATCGATAC
683971 TAAGCAATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:683991 original size:33 final size:32
Alignment explanation
Indices: 683930--683991 Score: 88
Period size: 33 Copynumber: 1.9 Consensus size: 32
683920 ACTCCATATC
*
683930 TATCGATACCAAGAACATGTATCGATACAATG
1 TATCGATACCAAGAACATGGATCGATACAATG
* *
683962 TATCGATACTAAGCAATATGGATCGATACA
1 TATCGATACCAAG-AACATGGATCGATACA
683992 TCTGGGTGTG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 12 0.46
33 14 0.54
ACGTcount: A:0.40, C:0.18, G:0.16, T:0.26
Consensus pattern (32 bp):
TATCGATACCAAGAACATGGATCGATACAATG
Found at i:685178 original size:476 final size:466
Alignment explanation
Indices: 684272--686086 Score: 1946
Period size: 476 Copynumber: 3.9 Consensus size: 466
684262 ATCCCAACAT
* *
684272 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTT
1 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGCATCGATTCTC
* * *
684337 GTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAAGATGCATGA
66 GTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGA
* * *
684402 CATTGATG-ATTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTT
131 CAGTGATGCA-TTGTTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTT
* * * * ** *
684466 ATCTCTTAAATAAGACAAACCTAAATATTGATAGTAATCCCTATTCTTATCAAGATTAGGCACCA
195 ATCTCTTAAATAAGACAAACATGAATAGTAATACAAATCCC-ATTCTT-TTAAGATTAGGCACCA
* * * * * * * * * * *
684531 TATATATAGTCTTTTTATTAGGATACATGATATTGATGCTTTGGTTTTC-CAAGAAAGGCATTTT
258 CAAACATAGTCTTCTCATAAAGATACACGATATTGACGCTTTGG-TTTCGCAAGAAAAGCTTTTT
* * * * * * *
684595 TCCCACCAATTTTTGTAAAGTCCATGTTCGTGCATCAAATGAGACAAACATAGATTCTAGTAGTT
322 TCCCACCAATTTTTCTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATG
*
684660 ATCTTCATTTATTTTGTGATTAGGCACTATAAGAACATTCTCCTCTTTAGGATAAATGATATTGA
387 ATCTTCATTCATTTTGTGATTAGG-ACTATAA-AA-ATTCT-C-CTTTA--ATAAA-GATATTGA
684725 TGATTTTCTTTTGCATGAAAATC
444 TGATTTTCTTTTGCATGAAAATC
* * * *
684748 TTTCCTTTGCCCTATTTTCCTTGAAAA-CAAAGTTCATCCCTTAAATAAGA-TAGACATTGATTC
1 TTTTCTTTGCCCTATTTTCCTT-AAAATCAAAATTCATCCCTTAAATAAGACAAG-CATCGATTC
* * *
684811 TCATAACCGTCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTATGATACAT
64 TCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACAT
* * * * * *
684876 GATAGTAATGCATTGTTGTCGCAAGAAAAGTTTTTCTTTCTACCGTTTTTTATAGAATCAAAGTT
129 GACAGTGATGCATTGTTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTT
* * * *
684941 TATTTCTTAAATAAGAAAAATATGAATAGTAATACAAATCGCCATTCCTTTTAGGATTAGGCACC
194 TATCTCTTAAATAAGACAAACATGAATAGTAATACAAATC-CCATT-CTTTTAAGATTAGGCACC
** * *
685006 ACAAACATACACTTCTTATAAAGATACACGATATTGACGCTTTGGTTTCGCAAGAAAATCTTTTT
257 ACAAACATAGTCTTCTCATAAAGATACACGATATTGACGCTTTGGTTTCGCAAGAAAAGCTTTTT
* * *
685071 TCCTACCAATTTTTCTAAAGTCTAAGTTCATGCCTCAAATGAGGCAAACATGGATTCTAGTAATG
322 TCCCACCAATTTTTCTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATG
*
685136 ATCTTCATTCATTTTGTGATTAAGGACTATAAAAATATTCTCCTAATTAAAAAAAAAAACGATAT
387 ATCTTCATTCATTTTGTGATT-AGGACTAT-AAAA-ATTCTCCT--TT-----AATAAA-GATAT
685201 TGATGATTTTCTTTTGCATGAAAATC
441 TGATGATTTTCTTTTGCATGAAAATC
* * * * ** * * *
685227 TTTTATTTTCCCTATTTTCCTGAAAATAAAAATTCATCCCTTAAATGTGACAAGCATCAATTTTT
1 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGCATCGATTCTC
* *
685292 GTAACAGTCTCAATTCTTTTCAAGATTGGGAACCAAGAACACATT-CCTTCATTAGGATACATGG
66 GTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGA
* * * * * * *
685356 C-GTTGATGCTTTG-TATC-CTAAGAAAGGCTTTTCTTTCCACCGTGTTTGATAGAATGAAAGTG
131 CAG-TGATGCATTGTTGTCGC-AAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTT
* * * * * *
685418 TGTTTCTTAAATAAGACAAACATGAATACTTATACAAATCACTATTCCTTTTAGGATTAGGCACC
194 TATCTCTTAAATAAGACAAACATGAATAGTAATACAAATC-CCATT-CTTTTAAGATTAGGCACC
* * * *
685483 ACAAACATAGTCTTCTCATAAAGATACGCGATATTGACACTTTGGTTTCACAA-AAAAGGCTTTC
257 ACAAACATAGTCTTCTCATAAAGATACACGATATTGACGCTTTGGTTTCGCAAGAAAA-GCTTTT
* *
685547 TTCCCACCAATTTTTCTAAAGTCTAAGTTCGCGCCTCAGATGAGACAAACATGGATTCTAGTAAT
321 TTCCCACCAATTTTTCTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAT
685612 GATCTTTCATTCATTTTGTGATTAGG-------AAA---------AAT--A-ATATTGATGATTT
386 GATC-TTCATTCATTTTGTGATTAGGACTATAAAAATTCTCCTTTAATAAAGATATTGATGATTT
* *
685658 TCTTTTGCATGGAAATA
450 TCTTTTGCATGAAAATC
* * * * * *
685675 TTTTTTTTGCCCTATTTTCCATAAAATCAAAATTAATCCCTTAACTATA-ACAAGCTTCGATTCC
1 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATA-AGACAAGCATCGATTCT
* * * *
685739 CGTAATAATCTCCATTCTTTTCAAGATT-GGAAGCCAATAACACATTCCTTTCATTAGGATACAT
65 CGTAACAGTCTCCATTCTTTTCAAGATTGGGAA-CCAAGAACACATTCCCTTCATTAGGATACAT
* * * *
685803 GACAGTGATGCCTTGTTGTCGGATGAAAAGTTTTTCTTTCCACCATTTTTGATAGAATCAAAGTT
129 GACAGTGATGCATTGTTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTT
* * * *
685868 TGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAAGATTAGACACC
194 TATCTCTTAAATAAGACAAACATGAATAGTAATACAAAT-CCCATTCTTTT-AAGATTAGGCACC
* * * * ** *
685933 ATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGTTAGAAATGCTTTTT
257 ACAAACATAGTCTTCTCATAAAGATACACGATATTGACGCTTTGGTTTCGCAAGAAAAGCTTTTT
* * * * * * *
685998 TGCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCAT-AAATGTGGCAAACAAGAATTCTAGCAAT
322 TCCCACCAATTTTTCTAAAGTCTAAGTTCGTGCC-TCAAATGAGACAAACATGGATTCTAGTAAT
* *
686062 GATCTTTATTCATTTAGTGATTAGG
386 GATCTTCATTCATTTTGTGATTAGG
686087 CATGAAAATC
Statistics
Matches: 1139, Mismatches: 169, Indels: 89
0.82 0.12 0.06
Matches are distributed among these distances:
447 4 0.00
448 114 0.10
449 51 0.04
450 198 0.17
451 5 0.00
452 2 0.00
468 1 0.00
469 2 0.00
474 2 0.00
475 7 0.01
476 351 0.31
477 231 0.20
478 47 0.04
479 121 0.11
480 2 0.00
481 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.36
Consensus pattern (466 bp):
TTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGCATCGATTCTC
GTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGA
CAGTGATGCATTGTTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTA
TCTCTTAAATAAGACAAACATGAATAGTAATACAAATCCCATTCTTTTAAGATTAGGCACCACAA
ACATAGTCTTCTCATAAAGATACACGATATTGACGCTTTGGTTTCGCAAGAAAAGCTTTTTTCCC
ACCAATTTTTCTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCT
TCATTCATTTTGTGATTAGGACTATAAAAATTCTCCTTTAATAAAGATATTGATGATTTTCTTTT
GCATGAAAATC
Found at i:687751 original size:472 final size:470
Alignment explanation
Indices: 686856--688325 Score: 1835
Period size: 478 Copynumber: 3.1 Consensus size: 470
686846 CAGGTTGGCC
*
686856 TTGCAAGAAAAGGACTT-T-TTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGA
1 TTGCAAGAAAA-G-CTTATCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA
** * * *
686919 CAAACATGAATAGTCATGTTAATCCCCATTCCTTTTAGGATTAGGCACCATAAATATACTCTTCT
64 CAAACATGAATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCAT-AA-ACAGTCTTCT
* * * * * *
686984 CATTAGGATACACGATATTGATGTTTTGGTTTTGCAAGAAAGGCATT-TTCACACCAATTTTTGT
127 CA-AAGGATACACGATATTGATGCTTTGGTTTCGAAAGAAAGGCTTTCTTCACACAAATTTTTGT
** * *
687048 AAAGTCTAAGTTCGTGCCTCAAATGTTACAAACATGGATTCCAGTAATGATCTTCATTCACTTTG
191 AAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTG
* * *
687113 TGATTGGGCACTATAAACACATTCTTCTCATTAGGATAAATGATATTGATGATTT-TTTTGTAGG
256 TGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGAT-ATTTCTTTTGTACG
* * * *
687177 GAAATCTTTTCTTTGCCTTGTTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCA
320 GAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGCATCG
* * *
687242 ATTGTCATAATAGTCTCCATTCTTTTCAAGATTGGGAACCATGAACACATTCCCATCAATGTCAT
385 ATTATCATAATAGTCTCCATTCTTTTCAAGATTGGGAACCA-AAACACATTCCCATC-AT-T-AG
*
687307 AATACATGATATTAATGCTTTGGTG
446 AATACATGACATTAATGCTTTGGTG
* * * * * **
687332 TTGCAAGAAAAGCTTATCTTTTCTCCATTTTCGATAGAATCAAAGATTCTCTCTTAAATAAGATG
1 TTGCAAGAAAAGCTTATCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
* * *
687397 AACATTAATAGTCATACTAATCCTCATT-TTTTTAGGATTAGTCACCATAAACAGTCTTCTCAAA
66 AACATGAATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACAGTCTTCTCAAA
* * * * *
687461 GGATACACGATATTGACGCTTTAGTTTCGTAAGAAAGGCTTTCTTCTCACAAATTTTTGTAAAAT
131 GGATACACGATATTGATGCTTTGGTTTCGAAAGAAAGGCTTTCTTCACACAAATTTTTGTAAAGT
*
687526 CTAAGTTCGTGCCTCAAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATT
196 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATT
* *
687591 AGGTACTATAAACACATTCTCCTCATTGGGATAAATGATATTGAT-TTTCTTTTGTACGGAAATC
261 AGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATATTTCTTTTGTACGGAAATC
* * *
687655 TTTTCTTGGCCCTATTTTTCTTAAAATCAAAATTCATCCTTTAAATAAGACAAGCATCGATTATC
326 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGCATCGATTATC
* ** * * **
687720 ATAACAAACTCCATTCTTTTCAAGATTGGGAACGAAAGACACATTCCCTTCATTAGGGTACATGA
391 ATAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAA-ACACATTCCCATCATTAGAATACATGA
*
687785 CATTGATGCTTTGGTG
455 CATTAATGCTTTGGTG
* *
687801 TTGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGT-TACTTAAATAAGAC
1 TTGCAAGAAAAGCTTATCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCT-CTTAAATAAGAC
* *
687865 AAACATGAATAGTCATACTAATCCCCATTCTTTTCATGATTAGGCACCATAAACATAGTCTTCT-
65 AAACATGAATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAAC--AGTCTTCTC
* * * * * *
687929 AATTAGGATAGACGATGTAGATGCTTTGGTTTCGAAAGAAAGGCTTTCATTCCCACTAATTTTTA
128 AA--AGGATACACGATATTGATGCTTTGGTTTCGAAAGAAAGGCTTTC-TTCACACAAATTTTTG
* *
687994 TAAAGTCTAAGTTCGTACCTCAAATGAGATAAACATGGATTCTAGTAATGATCTTCATTCATTTT
190 TAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCA-TTT
* * * * * *
688059 TGTCATTAGGCATTATAAACACATTATCCTCATTAGTATAAATGATACTGATTATATTCTTTTGC
254 TGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGA-TAT-TTCTTTTGT
* * * * * *
688124 ATGAAAATCTTTTCTTTGTCCTATTTTCCTTAAAATCAAAGTTCATCCCGTAAATCAGACAAGCA
317 ACGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGCA
* * * *
688189 TTGATTCTCATAATAGTCTCCATTCTTTTCCAGATTGGGAACCACAAACACATTCCCTTCATTAG
382 TCGATTATCATAATAGTCTCCATTCTTTTCAAGATTGGGAACCA-AAACACATTCCCATCATTAG
* * *
688254 GATACATGACGTTGATGCTTTGGTG
446 AATACATGACATTAATGCTTTGGTG
* * * * *
688279 TCGTAAGAAAAGTTTTTC-TTCCTACCTTTTTTGGA-AGAATCAAAGTT
1 TTGCAAGAAAAGCTTATCTTTCC-ACCATTTTT-GATAGAATCAAAGTT
688326 CGTTCCCTAA
Statistics
Matches: 863, Mismatches: 112, Indels: 36
0.85 0.11 0.04
Matches are distributed among these distances:
468 1 0.00
469 102 0.12
470 22 0.03
471 8 0.01
472 159 0.18
473 168 0.19
474 75 0.09
475 67 0.08
476 75 0.09
477 5 0.01
478 177 0.21
479 4 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.37
Consensus pattern (470 bp):
TTGCAAGAAAAGCTTATCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
AACATGAATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACAGTCTTCTCAAA
GGATACACGATATTGATGCTTTGGTTTCGAAAGAAAGGCTTTCTTCACACAAATTTTTGTAAAGT
CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATT
AGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATATTTCTTTTGTACGGAAATC
TTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGCATCGATTATC
ATAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAACACATTCCCATCATTAGAATACATGAC
ATTAATGCTTTGGTG
Found at i:690126 original size:34 final size:35
Alignment explanation
Indices: 690088--690154 Score: 102
Period size: 35 Copynumber: 1.9 Consensus size: 35
690078 ACCTTATAAT
*
690088 TCTATCTTTT-CGAAGGCTAAGATAGAA-CCTCTTC
1 TCTATCTTTTACAAAGGCTAAGATA-AATCCTCTTC
690122 TCTATCTTTTACAAAGGCTAAGATAAATCCTCT
1 TCTATCTTTTACAAAGGCTAAGATAAATCCTCT
690155 CAATTACTTC
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
34 12 0.40
35 18 0.60
ACGTcount: A:0.30, C:0.22, G:0.12, T:0.36
Consensus pattern (35 bp):
TCTATCTTTTACAAAGGCTAAGATAAATCCTCTTC
Found at i:690726 original size:19 final size:20
Alignment explanation
Indices: 690702--690752 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 20
690692 CATTTTCTGG
690702 TGTATCGATACAAAG-AACA
1 TGTATCGATACAAAGTAACA
* * *
690721 TGTATCGTTACTAAGTAATA
1 TGTATCGATACAAAGTAACA
*
690741 TATATCGATACA
1 TGTATCGATACA
690753 TCTGGGTGTG
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
19 13 0.52
20 12 0.48
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.31
Consensus pattern (20 bp):
TGTATCGATACAAAGTAACA
Found at i:691528 original size:16 final size:17
Alignment explanation
Indices: 691507--691540 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
691497 CAAGGGAAGC
*
691507 AAGCATGT-AGCAAACA
1 AAGCATGTGAGAAAACA
691523 AAGCATGTGAGAAAACA
1 AAGCATGTGAGAAAACA
691540 A
1 A
691541 TATATTCATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.53, C:0.15, G:0.21, T:0.12
Consensus pattern (17 bp):
AAGCATGTGAGAAAACA
Found at i:697408 original size:24 final size:24
Alignment explanation
Indices: 697381--697438 Score: 89
Period size: 24 Copynumber: 2.4 Consensus size: 24
697371 CCACCATAGC
*
697381 TTTCTCCTTTTGCTTATTCATATT
1 TTTCTCCTTCTGCTTATTCATATT
*
697405 TTTCTTCTTCTGCTTATTCATATT
1 TTTCTCCTTCTGCTTATTCATATT
*
697429 TTTCTTCTTC
1 TTTCTCCTTC
697439 AATGTTGGAC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.10, C:0.22, G:0.03, T:0.64
Consensus pattern (24 bp):
TTTCTCCTTCTGCTTATTCATATT
Found at i:701747 original size:20 final size:18
Alignment explanation
Indices: 701722--701794 Score: 83
Period size: 20 Copynumber: 3.7 Consensus size: 18
701712 GTTACAAGCT
701722 ATGTATCGATACATTTCTTC
1 ATGTATCGATACATTTC--C
*
701742 ATGTATCGATACAATGTACC
1 ATGTATCGATAC-AT-TTCC
701762 ATGTATCGATACATTGTACC
1 ATGTATCGATACATT-T-CC
701782 ATGTATCGATACA
1 ATGTATCGATACA
701795 AATAGTGATA
Statistics
Matches: 47, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
18 1 0.02
19 2 0.04
20 40 0.85
21 2 0.04
22 2 0.04
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (18 bp):
ATGTATCGATACATTTCC
Found at i:701912 original size:33 final size:32
Alignment explanation
Indices: 701847--701912 Score: 78
Period size: 33 Copynumber: 2.0 Consensus size: 32
701837 AATTTGTCCA
* *
701847 TGTATCAATACAATGAACATGTATTGAAACAT
1 TGTATCAATACAAAGAACATGTATCGAAACAT
* * *
701879 TGTATCGATACAAAGCAGCATGTATCGATACAT
1 TGTATCAATACAAAG-AACATGTATCGAAACAT
701912 T
1 T
701913 TGGGTGTGTA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
32 13 0.46
33 15 0.54
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.30
Consensus pattern (32 bp):
TGTATCAATACAAAGAACATGTATCGAAACAT
Found at i:702457 original size:17 final size:17
Alignment explanation
Indices: 702431--702504 Score: 60
Period size: 17 Copynumber: 4.1 Consensus size: 17
702421 GTTTTCATTT
702431 TTCT-CCCCTTAAAAAA
1 TTCTCCCCCTTAAAAAA
* *
702447 TTCTCCCCCTTAAACGAT
1 TTCTCCCCCTTAAA-AAA
*
702465 TATCTCCTCCTTTATAAAAAA
1 T-TCTCC-CC-CT-TAAAAAA
*
702486 TTCTCCCCCTTAAACAA
1 TTCTCCCCCTTAAAAAA
702503 TT
1 TT
702505 ATCTTCTCCC
Statistics
Matches: 45, Mismatches: 7, Indels: 11
0.71 0.11 0.17
Matches are distributed among these distances:
16 4 0.09
17 17 0.38
18 3 0.07
19 7 0.16
20 7 0.16
21 3 0.07
22 4 0.09
ACGTcount: A:0.31, C:0.32, G:0.01, T:0.35
Consensus pattern (17 bp):
TTCTCCCCCTTAAAAAA
Found at i:708203 original size:23 final size:24
Alignment explanation
Indices: 708177--708227 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
708167 TCATTAGATC
708177 ATTTAGA-AATAGTTTCTTCTTCA
1 ATTTAGACAATAGTTTCTTCTTCA
* **
708200 ATTTTGACAATCTTTTCTTCTTCA
1 ATTTAGACAATAGTTTCTTCTTCA
708224 ATTT
1 ATTT
708228 TTATTTTCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
23 6 0.25
24 18 0.75
ACGTcount: A:0.25, C:0.16, G:0.06, T:0.53
Consensus pattern (24 bp):
ATTTAGACAATAGTTTCTTCTTCA
Found at i:710319 original size:13 final size:13
Alignment explanation
Indices: 710301--710331 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
710291 ACATTTCTTC
710301 ATGTATCGATACA
1 ATGTATCGATACA
710314 ATGTATCGATACA
1 ATGTATCGATACA
*
710327 TTGTA
1 ATGTA
710332 CCATGTATCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.35
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:710319 original size:33 final size:33
Alignment explanation
Indices: 710281--710347 Score: 102
Period size: 33 Copynumber: 2.0 Consensus size: 33
710271 GTTACAAGCT
710281 ATGTATCGATACATT-T-CTTCATGTATCGATACA
1 ATGTATCGATACATTGTAC--CATGTATCGATACA
710314 ATGTATCGATACATTGTACCATGTATCGATACA
1 ATGTATCGATACATTGTACCATGTATCGATACA
710347 A
1 A
710348 ATAGTGATAG
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
33 30 0.94
34 1 0.03
35 1 0.03
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.36
Consensus pattern (33 bp):
ATGTATCGATACATTGTACCATGTATCGATACA
Found at i:711206 original size:19 final size:20
Alignment explanation
Indices: 711182--711232 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
711172 TTATGCTATA
*
711182 TATCGATACATGTTC-ATTG
1 TATCGATACATGCTCAATTG
* *
711201 TATCGATGCATACTCAATTG
1 TATCGATACATGCTCAATTG
711221 TATCGATACATG
1 TATCGATACATG
711233 AAACTCGTAG
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 12 0.46
20 14 0.54
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37
Consensus pattern (20 bp):
TATCGATACATGCTCAATTG
Found at i:711286 original size:20 final size:20
Alignment explanation
Indices: 711261--711313 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 20
711251 CTAAGTGAAA
*
711261 TGTATCGATACATG-GGACAT
1 TGTATCGATACATGAAGA-AT
*
711281 TGTATCAATACATGAAGAAT
1 TGTATCGATACATGAAGAAT
711301 TGTATCGATACAT
1 TGTATCGATACAT
711314 TATGCCCACC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 27 0.93
21 2 0.07
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
TGTATCGATACATGAAGAAT
Found at i:713027 original size:477 final size:470
Alignment explanation
Indices: 712055--713438 Score: 1584
Period size: 477 Copynumber: 2.9 Consensus size: 470
712045 GAGCTTTCAG
*
712055 ATGAATAGTCATACTAATCCTTATTCTTTTCAAGATTAGGCACCATAAACATGGTCA-TCTCATA
1 ATGAATAGTCATACTAATCC-TATTCTTTTC-AGATTAGGCACCATAAACATAGT-ATTCTCATA
* * * * *
712119 AGGTTACACGATATTGATTCTTTTGTTTCAG-AAGAAA--CATTCTCTTCCCACTAATTTTTGCA
63 AGGATACACGATATTGATACTTTAGTTTC-GCAAGAAAGGC-TT-TCTTCCCACCAATTTTTGTA
* * *
712181 AAGTCTAAGTTCATGCCTCAAATAAGACAAACGA-GGATTCTAGTAATAATCTTCATTCATTTTG
125 AAGTCTAAGTTCGTGCCTCAAAT-AGACAAAC-ATGGATTCTAGAAATGATCTTCATTCATTTTG
* ** * * * * *
712245 TGATTAGGGACTATAAACACATTCTCTTCACGAGGATAAATGATGTTAAAGATCTTCTTTTACAC
188 TGATTAGGAACTATAAACACATTCTCTTCATTAGGATAAATGATATTAATGATTTTCTTTTGCAT
* * ** * *
712310 GAAAATCTTTTCTCTGCTCTATTTTCCTTAAAATCAAAATTTGTCTCTTAAATATGAGAAGT-AT
253 G-AAAT-TTTTTTCTTC-CTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAA-TCAT
* ** * * * *
712374 CGATTCTCATAATAATCT-TCATTCTTTTCAAGATTAGGATCCATG-AACAGATTCCCTTCATTA
314 CGATTCTCGTAGCAATCTCT-ATTCTTTTCAAGATTGGGAACCA-GAAACACATTCCCTTCACTA
*
712437 GGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAA
377 GGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCCACCGTTTGTGATAGAA
* * * * *
712502 TCAAAGTTTGTCTCTTAAATAAGATAAAT
442 TCAAAGTTTGACCCTCAAATAAGACAAAC
** *
712531 ATTTATAGTCATACTAATCCTAATTCTTTTCAGGATTAGGCACCGTAAACATAGTATTCTCATAA
1 ATGAATAGTCATACTAATCCT-ATTCTTTTCA-GATTAGGCACCATAAACATAGTATTCTCATAA
* * * * * * * *
712596 GAATAAATGATATTGACACTTTGGTCTCGCAAGAAAGGCTTTCGTCCCCCCAATTTTTGTAAAGT
64 GGATACACGATATTGATACTTTAGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGT
* * *
712661 CTAAGTTTGTACCTCGAATGAGACAAACATGGATTCTAGAAATGATCTTCATTCATTTTGTGATT
129 CTAAGTTCGTGCCTCAAAT-AGACAAACATGGATTCTAGAAATGATCTTCATTCATTTTGTGATT
* * *
712726 AGGAACTTTAAACACTTTCTCTTCATTAGGATAAATGATATTTATGATTTTCTTTTGCATGCAAA
193 AGGAACTATAAACACATTCTCTTCATTAGGATAAATGATATTAATGATTTTCTTTTGCATG-AAA
*
712791 TTTTTTTCTTTTTCCTATTTTCCTTAAAATCAAAATTCATCCCATAAATATGACAATCATCGATT
257 TTTTTTTC---TTCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAATCATCGATT
* * *
712856 CTTGTAGCACTCTCTATTGTTTTCAAGATTGGGAACCAGAAACACATTCCCTTCACTAGGATACA
319 CTCGTAGCAATCTCTATTCTTTTCAAGATTGGGAACCAGAAACACATTCCCTTCACTAGGATACA
* * * * *
712921 TGACATTGATGCTTGGGTGTTGCAAGAAAAGCTTTTCTTTCCACTGTTTGTGATATAATCAAAGT
384 TGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCCACCGTTTGTGATAGAATCAAAGT
712986 TTGACCCTCAAATAAGACAAAC
449 TTGACCCTCAAATAAGACAAAC
* * * *
713008 ATGAATAGTCATACTAATCCCTGTTCTTTTCCAGATTAGGCACCATAAAGATAGTCTTCACATAA
1 ATGAATAGTCATACTAAT-CCTATTCTTTT-CAGATTAGGCACCATAAACATAGTATTCTCATAA
* * * * *
713073 GGATGCACGATATTGATACTTTAGTTTTGCAAGAAAGGCTTTCTTCCTATCAACTTTTGTAAAGT
64 GGATACACGATATTGATACTTTAGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGT
* * * * **
713138 CTAAATTCGTGTCTCAAATATAAAAAACATGGATTCTAGCTATGATCTTCATTCATTTTGTGATT
129 CTAAGTTCGTGCCTCAAATA-GACAAACATGGATTCTAGAAATGATCTTCATTCATTTTGTGATT
* * ** * * ** * *
713203 AGGCACTAAAAATGCATTCTCCTCATTAGGATAAATAATATGGATAATTTTCTTTGGCATGAAAA
193 AGGAACTATAAACACATTCTCTTCATTAGGATAAATGATATTAATGATTTTCTTTTGCATG-AAA
* * *
713268 TATTTTTTC--CCTATTTTCCTTAAAGTCAAAATTCATCCCTTAAATATGACAAGCATTGATTCT
257 T-TTTTTTCTTCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAATCATCGATTCT
* * *
713331 CGTAGCAATCTCCATTCTTTTCAAGATTGGGAACCA-AGAACACATTCCTTTCACTAGGATATAT
321 CGTAGCAATCTCTATTCTTTTCAAGATTGGGAACCAGA-AACACATTCCCTTCACTAGGATACAT
* * *
713395 GACAATGTTGCTTTGGTGTCATAAGAAAAGCTTTTCTTTCCACC
385 GACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCCACC
713439 ATTTTTTATT
Statistics
Matches: 768, Mismatches: 122, Indels: 39
0.83 0.13 0.04
Matches are distributed among these distances:
472 1 0.00
473 143 0.19
475 11 0.01
476 214 0.28
477 383 0.50
478 16 0.02
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.37
Consensus pattern (470 bp):
ATGAATAGTCATACTAATCCTATTCTTTTCAGATTAGGCACCATAAACATAGTATTCTCATAAGG
ATACACGATATTGATACTTTAGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCT
AAGTTCGTGCCTCAAATAGACAAACATGGATTCTAGAAATGATCTTCATTCATTTTGTGATTAGG
AACTATAAACACATTCTCTTCATTAGGATAAATGATATTAATGATTTTCTTTTGCATGAAATTTT
TTTCTTCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAATCATCGATTCTCGTAG
CAATCTCTATTCTTTTCAAGATTGGGAACCAGAAACACATTCCCTTCACTAGGATACATGACATT
GATGCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCCACCGTTTGTGATAGAATCAAAGTTTGACCC
TCAAATAAGACAAAC
Found at i:715566 original size:474 final size:473
Alignment explanation
Indices: 714047--717391 Score: 3609
Period size: 474 Copynumber: 7.1 Consensus size: 473
714037 GGACTTTTAA
* * * * * *
714047 CCACCATTTTTCATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATGCTAAT
1 CCACTATTTTTGATAGAATCAAAGTTTGTCCCTTAAATAAGACAAACATTAATAGTCATACTAAT
** * *
714112 CCCCATTCTTTTC-AGAATTACTCACCATAAAC--AGTCTTCTCATTAGGATACCCGATATTGAT
66 CCCCATTCTTTTCAAG-ATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGAT
* * * * * * * * *
714174 GTTTTGGTTTCACAAGAAAAGCATT-TTCCCACTAATTTTCGTAAAGTCTAAGCTCGTGTCTCAA
130 GCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTAGTGCCTCAA
* * * * * * * * *
714238 ACGTGGCAAACATAGATTGTAGTAATGATCTTCATTCACATTGTGATTTGGCACTACAAAGACAT
195 ATGAGACAAACATGGATTCTAGTAATGATCTTCATTCA-TTTGTGATTAGGCACTATAAACACAT
* * * * * *
714303 TCTCC-ACATTAGGATAAATGATGTTAATGATTTTCTTCTGCAGAGAAATCTTTTTTTTACCCTA
259 TCTCCTA-ATTTGGATAAATGATATTGATGATTTT-TTTTGCAG-GAAATCTTTTCTTTGCCCTA
*
714367 TTTTCCTTAAAATCAAAATTCATCCCTTAAATATA-ACAAGCATCGATTCTCGTAACAGTGTCCA
321 TTTTCCTTAAAATCAAAATTCATCCCTTAAATA-AGACAAGCATCGATTCTCGTAACAGTCTCCA
* * * * *
714431 TTCTTTTTAGGATTGGGAACCAAGTACACATTACCTTAATTAGGATACATGACATTGATGCTTTG
385 TTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTG
*
714496 GTGCCGA-AAGAAAAGGTTTTCTTT
450 GTGTC-ACAAGAAAAGGTTTTCTTT
* * * * *
714520 CCACCGA-TTTTAATAAAATCAAAGTTTGTCACC-TAAATAAGATAAACATTAATAGTGATACTA
1 CCA-CTATTTTTGATAGAATCAAAGTTTGTC-CCTTAAATAAGACAAACATTAATAGTCATACTA
* * * *
714583 AT-CCCATTCTTTTCAAGATTAGGCACCATAGACATAGTCTGCTCATAAGGATACATG--CTTGA
64 ATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGA
* * *
714645 CGCTTTGGTTTTGCAAGAAAGGCTTTC-TCCACACCAATTTTTGTAAAGTCTAAG-TACATGCCT
129 TGCTTTGGTTTCGCAAGAAAGGCTTTCTTCC-CACCAATTTTTGTAAAGTCTAAGTTA-GTGCCT
* * * * ** * * * ** *
714708 TAAATGTGACTAACATGGATTCTAGCACCGATCTGCAATCACATTGTGACAAGGCACTACAAACA
192 CAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCA-TTTGTGATTAGGCACTATAAACA
** * * **
714773 CATTCTCCTCCTTAAGG-TAAATGATGTTGATGATTTTCTTTTTTAGGAAAATCTTTTCTTTGCC
256 CATTCTCCTAATT-TGGATAAATGATATTGATGATTTT-TTTTGCAGG-AAATCTTTTCTTTGCC
* * * * *
714837 CTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGATAAGCGTCAATTCTCGTAACAGTCTT
318 CTATTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTC
* ** * *
714902 CATTCTTTTCAAGATGGGGAAGTAAGATCACATTCCCTTCATTATGATACATGACATTGATGCTT
383 CATTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTT
** *
714967 TGGTGTCGTAAAAAAAGGTTTTCTTT
448 TGGTGTCACAAGAAAAGGTTTTCTTT
** *
714993 CCACCGTTTTTGATAGAATCAAAGTTTGTCTCC-TAAATAAGACAAGCATTAATAGTCATACTAA
1 CCACTATTTTTGATAGAATCAAAGTTTGTC-CCTTAAATAAGACAAACATTAATAGTCATACTAA
* * * *
715057 TCCTCATTCTTTTCAAAATTAGGCA-CATAAACATAGCCTTCTTATAAGGATACACGATATTGAT
65 TCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGAT
** ** * *
715121 GCTTTCATTTCGCAAGAAAGGCTTTCACCCCACCAATTTTTGTAAAGCCTAAGTTAGTGGCTCAA
130 GCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTAGTGCCTCAA
* * *
715186 ATGAGACAAATATGGATTCTAGTAATGATCTTCATTCATTTCGTGGTTAGGCACTATATACACAT
195 ATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTT-GTGATTAGGCACTATAAACACAT
* **
715251 TCTCCTAATTTGAATAAATGATACGGATGATTTTTTTTGCATGGAAAT-TATTTCTTTGCCCTAT
259 TCTCCTAATTTGGATAAATGATATTGATGATTTTTTTTGCA-GGAAATCT-TTTCTTTGCCCTAT
* * * * *
715315 TTTCCTTAAAATCAAAGTTCATCACGTAAATAAGACAAGCAACGATTCTTGTAACAGTCTCCATG
322 TTTCCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCAT-
* * * *
715380 T-TTTTCAAGATTAGAAACCAAGAACACATTCCCTTCATTAGGATACATGACAATGATTCTTTGG
386 TCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGG
* *
715444 GGTCACAAGAAAA-GTTATCTTT
451 TGTCACAAGAAAAGGTTTTCTTT
* * * *
715466 CCATTATTTTTGATTGAATCAAAGTTTCTCCCTTAAATAAGGCAAACATTAATAGTCATACTAAT
1 CCACTATTTTTGATAGAATCAAAGTTTGTCCCTTAAATAAGACAAACATTAATAGTCATACTAAT
* * * * * * *
715531 CCCTATTCTTTTCAGGATTAGGCTCTACAAACATAGTCTTCTCATAAAGATACACGATATTGACG
66 CCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATG
* * * * *
715596 CTTTAGG-TTCTCAAGAAAGGCTTTCTTCTCACCATTTTTTGTAAAGTCTAAGTTCGTGTCTCAA
131 CTTT-GGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTAGTGCCTCAA
* *
715660 ATGAGACAAACATGGATTCTAGCAATGATCTTCATTCATTTTGTGGTTAGGCACTATAAACACAT
195 ATGAGACAAACATGGATTCTAGTAATGATCTTCATTCA-TTTGTGATTAGGCACTATAAACACAT
* * * *
715725 TCTCCTTAA-TAGGATAAATGCTATTGATGA-TTTTTTTCCATGAAAATCTTTTCTTTGCCCTAT
259 TCTCC-TAATTTGGATAAATGATATTGATGATTTTTTTTGCA-GGAAATCTTTTCTTTGCCCTAT
* * * * *
715788 TTTCCTTAAAATGAAAATTCATCCCATAAATTAGACAAGCATCGATTCTCCTAATAGTCTCCATT
322 TTTCCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATT
* *
715853 CTTTTCCAA-ATTGGGAACCAAAAACACATTCTCTTCATTAGGATACATGACATTGATGCTTTGG
387 CTTTT-CAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGG
* *
715917 TGCCGCAAGAAAAGGTTTTCTTT
451 TGTCACAAGAAAAGGTTTTCTTT
* * * * * * *
715940 GCACTGTTTTTGACAAAATCAAAG-TT-TCTCTTAAATAAGAAAAACATGAATAGTCATACTAAT
1 CCACTATTTTTGATAGAATCAAAGTTTGTCCCTTAAATAAGACAAACATTAATAGTCATACTAAT
* * * * * ** * **
716003 CCCTATCCTTTTCAGGATTAGACACCATAAAAACGGTCTTCTCATAAGGAGACACGATATTGACA
66 CCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATG
* * * * *
716068 TTTTGG-TTCGCAATAAAGGCTTTCTTCGCACTAATTTTTATAAAGTCTAAGTTCA-TGCCTCAA
131 CTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTT-AGTGCCTCAA
** * * * *
716131 ATGAGGTAAACGTGGATTCTAGCAATGATCTTAATTCATTATGTGATTAGACACTATAAACACAT
195 ATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATT-TGTGATTAGGCACTATAAACACAT
* *
716196 TCTCCTTAA-TAGGATAAATGATATTGATGATTTTTTTTGCATGGAAATCATTTCTTTGCCCTAT
259 TCTCC-TAATTTGGATAAATGATATTGATGATTTTTTTTGCA-GGAAATCTTTTCTTTGCCCTAT
* * * * * * *
716260 TTTCCTTAACATCAAAGTTCATCACTTAAATAAGACAAGCATTGATTCTCGTAACAATCTTCACT
322 TTTCCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATT
* * * * * * *
716325 CTTTTCAAGATTGGAAACTAAGAGCACATTCCCTTTATTAGGATAAATGACGTTGATGTTTTGGT
387 CTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGT
716390 GTCACAAGAAAAGGTTTTCTTT
452 GTCACAAGAAAAGGTTTTCTTT
* * * * * * * *
716412 CCTCTGTTTTTGATAGAATAAAAGTTTATCTCTTAAATAAAACAAACATTAAAACTCATACTAAT
1 CCACTATTTTTGATAGAATCAAAGTTTGTCCCTTAAATAAGACAAACATTAATAGTCATACTAAT
* * * * *
716477 CCCCATTCTTTTCAAGATTAGGTACTATAAACATAG-CTTTCTCATAAGGATATACGACATTAAT
66 CCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTC-TTCTCATAAGGATACACGATATTGAT
* *
716541 GCTTTGGTTTCGCAAGAAAGGCTTTCTCCCCACCAATTTTTGTAAAGTCTAAGTTCA-TGGCTCA
130 GCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTT-AGTGCCTCA
* * * * *
716605 AATGAGACAAATACGGATTCTAGTAATGGTCTTCATTCATTTAGTGATTAGGCACTCTATACACA
194 AATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTT-GTGATTAGGCACTATAAACACA
* * * * *
716670 TTCTCCTCATTAT-GATAAATAATGTTGACGATTTTTTTTTACAGAGAAATCTTTTCTTTGCCCT
258 TTCTCCTAATT-TGGATAAATGATATTGATGA-TTTTTTTTGCAG-GAAATCTTTTCTTTGCCCT
* * * * *
716734 ATTTTCCTTAAAATCAAAATTCATCCC-TAAATTATGACAAGCATCGATTCTCATAATAGACTTC
320 ATTTTCCTTAAAATCAAAATTCATCCCTTAAA-TAAGACAAGCATCGATTCTCGTAACAGTCTCC
** * * *
716798 ATTCTTTTCTTGATTGGGAACCAAGAACACTTTTCCTTCATTTGGATACATGACATTGATGCTTT
384 ATTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTT
* *
716863 AGTGTCACAAGAAAAGGTTTTTTTT
449 GGTGTCACAAGAAAAGGTTTTCTTT
* * * *
716888 CCACCATTTTTAATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATTAATAGTCATACTAAT
1 CCACTATTTTTGATAGAATCAAAGTTTGTCCCTTAAATAAGACAAACATTAATAGTCATACTAAT
* * * * * **** *
716953 CCCCATT-TTTTCACGATTTGACACCATAAACATAGTCTTCTAATTAGGATAGGTAATATTGAAG
66 CCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATG
*
717017 CTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAA
131 CTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTAGTGCCTCAAA
* * * * *
717082 TGAGATAAACATGGACTATAGTAATGATCTTCATTCACTTGTGATTAGGCACTATTAACACATTC
196 TGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTGTGATTAGGCACTATAAACACATTC
* * * * * * *
717147 TCCTCATTTGTATAATTGATACTGATAATTTTCTTTTGCAAGGAAATATTTT-TTTGACGCTATT
261 TCCTAATTTGGATAAATGATATTGATGATTTT-TTTTGC-AGGAAATCTTTTCTTTG-CCCTATT
* * * * * *
717211 TTCCTTAAAATCAAAGTTAAT-CCTATAAATTAGACAAGCATCGATTCTCCTAATAGTCTTCATT
323 TTCCTTAAAATCAAAATTCATCCCT-TAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATT
* * * * *
717275 CTTTTCCAA-CTTGGGAACCAAAAACACA-TCCCTTTCTTTAAGG-TACATTACATTGATGCATT
387 CTTTT-CAAGATTGGGAACCAAGAACACATTCCC-TTCATT-AGGATACATGACATTGATGCTTT
* * *
717337 GGTGTCATAAGAAAAGCTTTTATTT
449 GGTGTCACAAGAAAAGGTTTTCTTT
* *
717362 CCACCATTTTTGATAGAATCAATGTTTGTC
1 CCACTATTTTTGATAGAATCAAAGTTTGTC
717392 TCTCAAAGGA
Statistics
Matches: 2410, Mismatches: 404, Indels: 115
0.82 0.14 0.04
Matches are distributed among these distances:
470 2 0.00
471 138 0.06
472 322 0.13
473 642 0.27
474 674 0.28
475 410 0.17
476 222 0.09
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (473 bp):
CCACTATTTTTGATAGAATCAAAGTTTGTCCCTTAAATAAGACAAACATTAATAGTCATACTAAT
CCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATG
CTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTAGTGCCTCAAA
TGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTGTGATTAGGCACTATAAACACATTC
TCCTAATTTGGATAAATGATATTGATGATTTTTTTTGCAGGAAATCTTTTCTTTGCCCTATTTTC
CTTAAAATCAAAATTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTT
TCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCA
CAAGAAAAGGTTTTCTTT
Found at i:719534 original size:476 final size:473
Alignment explanation
Indices: 717989--733894 Score: 17217
Period size: 476 Copynumber: 33.7 Consensus size: 473
717979 TACCTTATTA
* ** * * *
717989 AGAATCAAAGTTTGTCTCTTAAATAAGATAAACAAGAATACTCTTGCTAATCCCCATTCTTTTCA
1 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCTTTTCA
* * * * * * *
718054 AGATTAGACACCATAAACATAGTCTTCTCATTAGGATACACAATATTAATGTTTTGGGTTCGCAA
66 AGATTAGGCTCCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAA
* * * * * * *
718119 GAAAGGATTT-TCCCACTAATTTTTGTAAAGTCTAAGTTTGTGAT-GCAAATGTGACAAACAAGG
131 GAAAGGCTTTCTCCCACCAATTTTTATAAAGTCTAAGTTCGTG-TCTCAAATGAGACAAACATGG
* * ** * ***
718182 ATTCTAGCAACGATCTTCATTCACATTATGGCAAGGCACTAT-AA-ACA-----C----TAGGAT
195 ATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGAT
* * * *
718236 AAATGATGTTGATGATTTTCTTTTGCA-GGAAAATCTTTT-TTTACGCTATTTTCCTTAAAACCA
260 AAATGATATTGATGATTTT-TTTTGCATGG-AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
* * * ** * * *
718299 AAATTCATCCCCTAAATATA-ATAAGCATTAATTCTCGTAACTGTCTTCATTCTTTTCAAGATTG
323 AAATTGATCCCTTAAATA-AGACAAGCATCGATTCTCGTAACAGTCTCCACTCTTTTCAAGATTG
* * ** **
718363 CGAACCAAGAACCCATTCCC-TCTATTAGGATACATGGCATTGATGCTACGGTGG-CGTAAGAAA
387 -GAACCAAGAACACATTCCCTTC-ATTAGGATACATGACATTGATGCTTTGG-GGTCACAAGAAA
* *
718426 AGGCTTTCTGTCCACTGTTTTTGAT
449 AGGTTTTCTTTCCACTGTTTTTGAT
* * * ** *
718451 AGAATCAAAATTTGTCTCTTAAAAAAGACAAACAGTAATAGTCATACTAATCTTCATTCTTTTTA
1 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCTTTTCA
* * * * * * *
718516 GGATTAGGCACCATAAACAAAGCCTTCTCATGAGGATACATGATATTGATGCTTTGGTTTCACAA
66 AGATTAGGCTCCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAA
* ** * * * *
718581 GAAAGGCTTT-TCCCCAACAATTTTCGT-AAGGCTTATGTTCGTGGCTCAAATGAGACAAAAATG
131 GAAAGGCTTTCT-CCCACCAATTTTTATAAAGTC-TAAGTTCGTGTCTCAAATGAGACAAACATG
* * * * * * *
718644 GATTCGT-GTAATGATCTTTATTTATTTTGTCATTAGGCACTATATACATATTCTCCTCATTTGG
194 GATTC-TAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGG
* * *
718708 ATAAATGATA-CGAATGATTTTTTTTTGCATTGAAATCATTTCTTTGCCCTATTTTCCTTAAAAT
258 ATAAATGATATTG-ATGA-TTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
* * * * * *
718772 CAAAGTTCATCACTTAAATAAGACAAGCAACGA-CCT-GTAACAGTCTTCACT-TTTTGCAAGAT
321 CAAAATTGATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCACTCTTTT-CAAGAT
* *
718834 TGGGAACCAAGAACACATTCCCTTCATTATGATACATGACATTGATGCTTTGGGGTCATAAGAAA
385 T-GGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCACAAGAAA
*
718899 AGG-TTTCTTTCCACT-ATTTTGAT
449 AGGTTTTCTTTCCACTGTTTTTGAT
* * * * * * *
718922 CGAATCAAAATTTCTCTCTTAAATAAGGCAAACATTAATAGTGATACTAATCCTCATTATTTTCA
1 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCTTTTCA
* * * * * *
718987 GGATTAGGCACCATAAACATAG-CTTTCTTATAAGGATACACGATATTGATGCTTTAGTTCCACA
66 AGATTAGGCTCCATAAACATAGTC-TTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCA
* * * * *
719051 AGAAAGGCTTTCTCACTACCAATTTTTGTAAAGTCTAAGTTCGTGCCCCAAATGAGACAAATATG
130 AGAAAGGCTTTCTC-CCACCAATTTTTATAAAGTCTAAGTTCGTGTCTCAAATGAGACAAACATG
* * * * * *
719116 GATTCTAGTAAAGAGGTCTTCAATCATTTTGTGATTAGGCACTCTATACACATTCTCCTCATTTG
194 GATTCTAGTAATGA--TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAG
* * ** * * *
719181 GATAAATGATATAGATAATTTTTTTTGCATAAAAATCATTTCTTTTCCCTATTTTCCCTAAAATC
257 GATAAATGATATTGATGATTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * * * * * *
719246 AAAGTTCATCACTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTTTTTTTTAAGATT
322 AAAATTGATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCA-CTCTTTTCAAGATT
* * * *
719311 GTGATCCAAG-ACACAGTCCCTTCATTAGGATACATGACATTGATGCTTTAGAGTCACAAGAAAA
386 G-GAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCACAAGAAAA
* *
719375 TGTTTTATTTCCACTGTTTTTGAT
450 GGTTTTCTTTCCACTGTTTTTGAT
*** * * * * *
719399 -CTTTTATAGTTTTTCTCTCAAATAAGACAAACATTAATAGTCATACTAAGCCCCATTCTTTTCA
1 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCTTTTCA
* * * ** * * *
719463 AGACTAGGCTCCATAAACATAGTCTTCTCATAAGAATACACGATATTAACACTTTGGGTTCACAT
66 AGATTAGGCTCCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAA
** * ***
719528 GAAAGGCTTTCTTCCCACCAATTTTTGCAAAGTCTAAGTCCGCACCTCAAATGAGACAAACATGG
131 GAAAGGCTTTC-TCCCACCAATTTTTATAAAGTCTAAGTTCGTGTCTCAAATGAGACAAACATGG
** *
719593 ATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTAACAAGAT
195 ATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGAT
* * * * *
719658 AAATGATATTGAT-TTTTTTTCTTG--TGAAAATCTTTTCATTACCCTATTTTCCATAAAATCAA
260 AAATGATATTGATGATTTTTT-TTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
** * *
719720 AA-TGCATCCCTTAAATAAGATGAGCATCAATTCTCATAACAGT-TCC-CATCCTTTTCAAGATT
324 AATTG-ATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCAC-T-CTTTTCAAGATT
* * * *
719782 AGGAACCGAA-AACACATTCCCTTCATTAGGATACAAGACATTCATGCTTCGGTGTCACAAGAAA
386 -GGAACC-AAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCACAAGAAA
* *
719846 TA-GTTTTCTTTCCACAGTTTTTGAC
449 -AGGTTTTCTTTCCACTGTTTTTGAT
* * * * * * *
719871 AAAATCAAAGTTTGTCACCTAAATAAGATAAATATAAATAGTCATACAAATCCCCATTCTTTTCA
1 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCTTTTCA
* * * * * * * *
719936 GGATTAGACACCAAAAAAATAATTTTCTCATAAGGATACACGATATTGATGCTTTAGG-TTCGTA
66 AGATTAGGCTCCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTT-GGTTTCGCA
* *
720000 AAAAAGGCTTTCTTCCCACCAATTTTTATAAAGTCTAAGTTTGTGTCTCAAATGAGACAAACATG
130 AGAAAGGCTTTC-TCCCACCAATTTTTATAAAGTCTAAGTTCGTGTCTCAAATGAGACAAACATG
* * * *
720065 GATTCAAGTAATGATCTTCATTCATTCTGTGATTAGGCACTATAAACACATTCTCTTTATAAGGA
194 GATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGA
* * *
720130 TAAATGATATTGATGATTTATTTTTGCATGGAAATGTTTTCTTTGGCCGATTTTCCTTAAAATCA
259 TAAATGATATTGATGATTT-TTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
* * * * *
720195 AAGTTGATCCGTTAAATAAGACAAGCATTGATTCTCGTAACAGTCTGCACTCTTTACAAGATTAG
323 AAATTGATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCACTCTTTTCAAGATT-G
* * *
720260 GATCCAAGAACACATTCCCTTCAATAGGATACATGACACTGATGCTTTGGGGTCACAAGAAAAGG
387 GAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCACAAGAAAAGG
* ** *
720325 TTTTCTTTCCACCGGCTTTGAC
452 TTTTCTTTCCACTGTTTTTGAT
* * * * * * *
720347 AAAATCAAAGTTTATTTCTCAAATAATACAAACATGAATAGTCATACAAATCCCCATTCTTTAT-
1 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCTTT-TC
* * * * * *
720411 AGGATTAGACACCATAAAAATTGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGCA
65 AAGATTAGGCTCCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCA
* * *
720476 AGAAAGGCTTTCTTCCAACCAATTTTTATAAAGTCTAAGCT-GATGTCTTAAATGAGACAAACAT
130 AGAAAGGCTTTC-TCCCACCAATTTTTATAAAGTCTAAGTTCG-TGTCTCAAATGAGACAAACAT
*
720540 GGATT-TAAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAATACATTCTCCTTATTAG
193 GGATTCT-AGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAG
* * * * * *
720604 GATAAACGGTATTGATGATTTTCTTTTGCAAGGAAATCATTTCTTTGGCCTATTTTCATTAAAAT
257 GATAAATGATATTGATGATTTT-TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
* * * * * *
720669 CAAAATTGATCCTTTAAATAAGACAAGCATTGATTCTCATAATAGTCTCCATTCTTTTCAAGTTT
321 CAAAATTGATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCACTCTTTTCAAGATT
* * * * **
720734 AGGATCCAAGAACACATTCCCTTCATTAAGCTACATGACATTGATGCTTT-GGGCCGTAAGAAAA
386 -GGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCACAAGAAAA
* *** *
720798 GGTTTTGTTTCTGTTGTTTTTGAC
450 GGTTTTCTTTCCACTGTTTTTGAT
* * * * * *
720822 AAAATCAAAGTTTATTTCTTAAATAAGACAAACATGAATTGTCATACTAATCCCCATTCTTTTTA
1 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCTTTTCA
* * * * * * * * *
720887 GGATTAGACACCATAAAAATAATATTCTCATAAGGATACACGATATTGACGATTTGGTTTTGCAA
66 AGATTAGGCTCCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAA
* ** * * * *
720952 GAAAGGTTTTCTTCCTGCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATTAGACAAATATGG
131 GAAAGGCTTTC-TCCCACCAATTTTTATAAAGTCTAAGTTCGTGTCTCAAATGAGACAAACATGG
* * * * **
721017 ATTCTAGTAATGATCTTCATTCATTTTGTGGTTAGACACTATAAGCACATTCT-CTTCAATAAAA
195 ATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTT-ATTAGGA
* * *
721081 TAAATGATATTGGTGATTTTTTTTTTTTGCATGGAAATCATTTCATTGCCCTATTTTCCTTAAAA
259 TAAATGATATTGATGA----TTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAA
* * ** *
721146 TCAAAATTCATCCCTTAAATAAGACAAGCATCAATTCTTTTAACAATCTCCACTCTTTTCAAGAT
320 TCAAAATTGATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCACTCTTTTCAAGAT
* * *
721211 TGGATACCAAGAACACATTCTCTTCATTTGGATACATGACATTGATGCTTTTGGGTCACAAGAAA
385 TGGA-ACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCACAAGAAA
* *
721276 AGGTTTTTTTTTCCATTGTTTTTGAT
449 AGG-TTTTCTTTCCACTGTTTTTGAT
* * * * *
721302 GGAATGAAAGTTTGTCCCTTAAATAAGACAAACATTAATAGTCATACTAATCCCTAATCTTTTCA
1 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCTTTTCA
* * * * * * * ** * **
721367 AAATTAGACACCAAAAATAGAGTCATCTCATAAAAATACACAATATTGACACTTTAGGTTT-GCA
66 AGATTAGGCTCCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTT-GGTTTCGCA
* * *
721431 AGAAAGGCTTTCTTCCCACCAATTTTCATAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATG
130 AGAAAGGCTTTC-TCCCACCAATTTTTATAAAGTCTAAGTTCGTGTCTCAAATGAGACAAACATG
* * ** ** * * *
721496 GATTCTGGTAATGGTCTTTTTTTGTTTTGTGATTAGGCACTATAAACCCATTCTCCTCAACT-GG
194 GATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCT-TATTAGG
** * ** * *
721560 ATAAATGATATTGACAATTTTTTTTTTGCATGGAAATATTTTCTTTGCGTTATTTCCCCTAAAAT
258 ATAAATGATATTGATGA--TTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
* * * * * * * *
721625 CAAAATTAATCCCTTAAATAAGACATGCATCAATTCTCATAACAGTTTCTATTCTTTTCAATATT
321 CAAAATTGATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCACTCTTTTCAAGATT
* * *
721690 GAGAACCAACAACACATTCCCTTCATTTGGATACATGACATTGATGCTATGGGGTCACAAGAAAA
386 G-GAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCACAAGAAAA
721755 GGTTTTCTTTCCACTGTTTTTGAT
450 GGTTTTCTTTCCACTGTTTTTGAT
* * *
721779 AGAATCAAAGTTTGTGTCTTAAATATGACAAACATTAATAGTCATACTAATGCCCATTCTTTTCA
1 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCTTTTCA
* * * * * * * *
721844 AAATTAGGCTCCGT---TATAGTCGTCACATAAGGATACACAATATTGACGCTTTGGTTTTGCAA
66 AGATTAGGCTCCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAA
* *
721906 -AAAGAGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGTCTCAAATGGGACAAACATG
131 GAAAG-GCTTTC-TCCCACCAATTTTTATAAAGTCTAAGTTCGTGTCTCAAATGAGACAAACATG
* * ** * * * *
721970 GATTCTAGTAATGATCCTCTTTCATTTTGTGATTAGTAACTATCAACACATTCTCCTCAATGGGA
194 GATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGA
* ** *
722035 TAAATGATATTCACAATTTCTTTTTGCATGGAAATCTTTTCTTTTCCCTATTTTCCTTAAAATC-
259 TAAATGATATTGATGATTT-TTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
* * * *
722099 --A---A--CCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTTTAAAATTG
323 AAATTGATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCACTC-TTTTCAAGATT-
* * * * * *
722157 GGAACCAAAAACACATTCTCTTGATTTGGATACATGACATTGATGCTTTGGTGTCGCAA-AATAA
386 GGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCACAAGAA-AA
* * *
722221 GGTTTTCTTTCCACCGTTTTTCAC
450 GGTTTTCTTTCCACTGTTTTTGAT
* * * * * ** * *
722245 AAAACCAATGTTTTTCTCTTGAATAAGACAAACACGAATAGTCATTCTAATCCCCATTCTCTTCA
1 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCTTTTCA
* * * * * * *
722310 GGATTA-GATACCATAAAAATAGTCTTCTCATATGGATACACGATATTGATGCTTTGATTTTGTA
66 AGATTAGGCT-CCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCA
* * * * *
722374 AGAAAAGCTTTCTTCCCACCAATTTTTGTAAAATCTAAGTTCCTGTCTCAAATGAGACAAACTTG
130 AGAAAGGCTTTC-TCCCACCAATTTTTATAAAGTCTAAGTTCGTGTCTCAAATGAGACAAACATG
* ** *
722439 GATTCTAGTAATGATCTTCATTCATTTTATGATTAGGCACTATAAGTACATTCTCCTTATTAAGA
194 GATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGA
* * *
722504 TAAATGATATTGATGATTTTCTTTTGCTTAGAAATCATTTT-TTTGCCGTATTTTCCTTAAAATC
259 TAAATGATATTGATGATTTT-TTTTGCATGGAAATC-TTTTCTTTGCCCTATTTTCCTTAAAATC
* * * * * *
722568 AAAATTGATCCCTTAATTAAGACAAGCATCGATTCTCATCACAATCCCCACACTTTTCAAGATTG
322 AAAATTGATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCACTCTTTTCAAGATTG
** * * * *
722633 GAAATGAAGAACGCAATCCCTTCATTAAGATACATGACATTGATGCCTTGGGGTCACAAGAAAAG
387 G-AACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCACAAGAAAAG
* * *
722698 GTTTTCTTCCCACTATTTTTGGT
451 GTTTTCTTTCCACTGTTTTTGAT
* * *
722721 AGAAT-AGAAGTTTGTCTCTTAAATAAGATAAATATTAATAGTCATACTAATCCCCATTCTTTTT
1 AGAATCA-AAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCTTTTC
* * * * * * **
722785 AGGATTAGGCTTCATAAACATAGTCTTCTCATAAGGATACATGGTATTGACGCTTTGGTTTTGTG
65 AAGATTAGGCTCCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCA
* * * *
722850 AGAAAGGCTTTCCTCCCACCAATTTTTATAAAGTCTAAGTTTGTATCTCAAGTGAGATAAACATG
130 AGAAAGGCTTT-CTCCCACCAATTTTTATAAAGTCTAAGTTCGTGTCTCAAATGAGACAAACATG
* * * *
722915 GATTCTAATAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTTTCCTCATTGGGA
194 GATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGA
* ** * * * *
722980 TAAATGATGTTGATGATTTTTTTAACTTGAAAATCTTATCTTTGCCCTATTTTCCTTAACATCAA
259 TAAATGATATTGATGATTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
* * * * * *
723045 AATTGATACCATAAATAAGACAAGCATTGATTTTCGTAAAAGTCTCCACTCCTTTCAAGATTGGA
324 AATTGATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCACTCTTTTCAAGATTGG-
* * * * ** *
723110 AACCAAGAACACATTCCCTTCTTTAAGATACATGACATTGATGCTTTAGTGTCGGAA-AAAAAGT
388 AACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCACAAGAAAAGGT
* * *
723174 TATCTTTCCA-TCATTTTTGAC
453 TTTCTTTCCACT-GTTTTTGAT
* * * ** * *
723195 AAAATCAAAGTTTGTCTCCTAAATAAGGCAAACACCAATAGTCATACTGATCCCCATTCTTTCCA
1 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCTTTTCA
* * * * * * * *
723260 AGATTAGACACCATAAAAATAGTCTTCTCATAAGGATACATGAGAGTGATGCTTTCGATTCGCAA
66 AGATTAGGCTCCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAA
* *
723325 GAAAGGCTTTCTTCCCACCAATTTTTATAAAGTCTAAGTTCGTGTCTCAAATGGGACAAATATGG
131 GAAAGGCTTTC-TCCCACCAATTTTTATAAAGTCTAAGTTCGTGTCTCAAATGAGACAAACATGG
* **
723390 ATTCTAGTAATGATCTTCATTTATTTTGTCG-TTAGGCACTATAAATGCATTCTCCTTATTAGGA
195 ATTCTAGTAATGATCTTCATTCATTTTGT-GATTAGGCACTATAAACACATTCTCCTTATTAGGA
* * * * * * *
723454 CAAATGATATTGATGCTTTTCTTTGGCTTGAAAATCATTTT-TTTGTCCTATTTTCCTTAAAAAC
259 TAAATGATATTGATGATTTT-TTTTGCATGGAAATC-TTTTCTTTGCCCTATTTTCCTTAAAATC
* * * *
723518 AAAATTGATCCCCTAAAAAAGACAAGCATTGATTCTCGTAACAGTCTCCACTCTATTCAAGATTT
322 AAAATTGATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCACTCTTTTCAAGA-TT
* * * * ** **
723583 GGAACAAAGAGCACATTCCCTTCAATAAGATACATGACATTGACACTTTATGGTCACAAGAAAAG
386 GGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCACAAGAAAAG
*
723648 GTTTTCTTTCCACTATTTTTGAT
451 GTTTTCTTTCCACTGTTTTTGAT
* * * * *
723671 AGAATCAAAATTTATCTTTTAAATATA-ATAAACATTAATAGTCAAACTAATCCCCATTCTTTTC
1 AGAATCAAAGTTTGTCTCTTAAATA-AGACAAACATTAATAGTCATACTAATCCCCATTCTTTTC
* * * *
723735 ACGATTAGGC-CCTATAAACGTAGTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTAGC
65 AAGATTAGGCTCC-ATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGC
* * *
723799 TAGAAAGGCTTTCTTCCCACCAATTTTTATAAAGTCTAAGTTCGTGTCTCAAATGGGACAAATAT
129 AAGAAAGGCTTTC-TCCCACCAATTTTTATAAAGTCTAAGTTCGTGTCTCAAATGAGACAAACAT
* * **
723864 GGATTCTAGTAATGATTTTCATTTATTTTGTGATTAGGCACTATAAACGTATTCTCCTTATTAGG
193 GGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGG
* * * * *
723929 ATAACTGATATTGATGATTTTCTTTGGCTTGAAAATCTTTTCTTTGTCCTATTTTCCTTAAAATC
258 ATAAATGATATTGATGATTTT-TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * *
723994 AAAATTAAT-CCTCTAAATAAGACAAGTATCGATTCTCGTAACAGTCTCCACTTTTTTCAAGATT
322 AAAATTGATCCCT-TAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCACTCTTTTCAAGATT
*
724058 GGGAACCAAGAACACATTCCCTTCAATAGGATACATGACATTGATGCTTTGGGGTCACAAGAAAA
386 -GGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCACAAGAAAA
*
724123 GGTTTTCTTTCCACTATTTTTGAT
450 GGTTTTCTTTCCACTGTTTTTGAT
* * * *
724147 TGAATCAAAGTTTGTCTCTTAAATATGACAAACACTAATAGTCATACTAATCCCCACTCTTTTCA
1 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCTTTTCA
* * **
724212 AGATTAGGCTCCATAAACATAGTCTTCTCATAAGGATGCACGATATGGATGCTTTGGTTTTACAA
66 AGATTAGGCTCCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAA
* * * * **
724277 -AGAAGGCTTTCTTCCCACAAATTTTTGTAAAGTCTAAGTTCGGGCCTTGAATGAGACAAACATG
131 GA-AAGGCTTTC-TCCCACCAATTTTTATAAAGTCTAAGTTCGTGTCTCAAATGAGACAAACATG
* * * * * * *
724341 AATTTTAGTAATGATCTTCATTCATTTTATGATTAGGCACTATAAGCATATTCTCCTCAAT-GCG
194 GATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAG-G
* * * *
724405 ATAAATGAT-TT--TGACTTTTTTTTACATGAAAATCTTTGCTTTCCCCT-TTTTCCCTTAAAAT
258 ATAAATGATATTGATGA-TTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTT-CCTTAAAAT
* * * * * * * *
724466 CAAAATTAAT-CCTTCGAATAAGACAAGCATCAATTCTCATAAGATTTTCCATTCTTTTCAAGAT
321 CAAAATTGATCCCTT-AAATAAGACAAGCATCGATTCTCGTAACAGTCTCCACTCTTTTCAAGAT
* * * ** *
724530 TGAGAACCAACAACACATTCCCTTCATTTGGATACATGAGATTGATGCTTTGGTTTCGCAAGAAA
385 TG-GAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCACAAGAAA
*
724595 AGGTTTTCTTTCCACTTTTTTTGAT
449 AGGTTTTCTTTCCACTGTTTTTGAT
* * *
724620 AGAATCAAAGTTTGTCTCTTAAATAAAAGAAACATTAATAGTCATACTAATCCCTATTCTTTTCA
1 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCTTTTCA
* * * * * * * *
724685 GGATTAGACACTATAAACATAGTCTTCTGATATGGATACATGATATTGATGCTTTGGTTTCACAA
66 AGATTAGGCTCCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAA
* * * * * *
724750 GAAAGGCTTTCTCCCCACTAATTTTTGTAAATTCTAAGTTCGTGCCTCAAATGAGGCAAATATGG
131 GAAAGGCTTTCT-CCCACCAATTTTTATAAAGTCTAAGTTCGTGTCTCAAATGAGACAAACATGG
* * * *
724815 ATTCTAGTTATAACCTTCATTCATTTTGTAATTAGGCACTAT------A-------TA--AGG-T
195 ATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGAT
* * * *
724864 AAATGATATTGATGATTTTCTTTTGGATGAAAATATTTTCTTTGCCATATTTTCC-TAGAAATCA
260 AAATGATATTGATGATTTT-TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTA-AAATCA
* * * * *
724928 AAATTCATCCCATAAATAAGACAAGCATCGATTCTTGTAATAGTCTCCATTCTTTTCAAGATTGT
323 AAATTGATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCACTCTTTTCAAGATTG-
* * *
724993 GAACCAAAAACACATTTCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAA-AAATAG
387 GAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCACAAGAAA-AG
** *
725057 GTTTTCTTTCCACCATTTTTGAC
451 GTTTTCTTTCCACTGTTTTTGAT
* * *
725080 A-AAACAAATGTTTGTCTCTTAAATAAGACAGATATTAATAGTCATACTAATCCCCATTCTTTTC
1 AGAATCAAA-GTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCTTTTC
* * * * * *
725144 AACATTAGACACCATAAAAATAGTCTTCTCATAATGATACACGATATTGATGCTTTGGTTTCACA
65 AAGATTAGGCTCCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCA
* * *** * *
725209 AGAAAAGTTTTCTTCTTGCCAATTTTTATAAAGTCTAAGTTTGTGTCTTAAATGAGACAAACATG
130 AGAAAGGCTTTC-TCCCACCAATTTTTATAAAGTCTAAGTTCGTGTCTCAAATGAGACAAACATG
* * * * * *
725274 GATTCTAGTAACGTTCTTCATTCATTTTGTGATTAGGCACTATAAGCACATTCACCTTAGTAGAA
194 GATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGA
* * * **
725339 TAAATGATGTTGATGATTTTCTTTTGCTTGGAAATCTTTTTTTTTTTGCTGTATTTTCCTTAAAA
259 TAAATGATATTGATGATTTT-TTTTGCATGGAAATC---TTTTCTTTGCCCTATTTTCCTTAAAA
* * * * * * * * * * *
725404 ACAAAATTGATCCTTTACATAAGACAAGCATCGATTCTCGTCATAGTTTTCACACTTTCCAACAA
320 TCAAAATTGATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCACTCTTTTCAAGAT
* * * *
725469 TGGAAACGAAGAACACAATCCCTTTATTAGCATACATGACATTGATGCTTTGGGGTCACAAGAAA
385 TGG-AACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCACAAGAAA
*
725534 AAGTTTTCTTTCCACTGTTTTTGAT
449 AGGTTTTCTTTCCACTGTTTTTGAT
* *
725559 AGAATCAAAGTTGGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCCTTCTTTTCA
1 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCTTTTCA
* * * * * *
725624 GGACTAGGCTCCATAAACATAGTCTTCTCATGATGATACACGATATTGATGCTATGGTTTTGCAA
66 AGATTAGGCTCCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAA
* * * * * * * * * * * *
725689 GAAATGCTTTTTCCTACTAATTTTTCTACAGTCTACA-TTTGTGCCTTAAGTGAGACAAATATAG
131 GAAAGGCTTTCTCCCACCAATTTTTATAAAGTCTA-AGTTCGTGTCTCAAATGAGACAAACATGG
* * *
725753 ATTCTAGTAATGATGTTCATTCATGTTT-T-ATTAGGCACTATAAACACATTCTCCTTAATACGA
195 ATTCTAGTAATGATCTTCATTCAT-TTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGA
* *
725816 TAAATGTTATTGATGATTTTTTTTTCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
259 TAAATGATATTGATGATTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
* * * * * *
725881 AATTAATCCCTTAAATAAGAAAAGCATCGTTTCTCGTAACAGTCCCCACTATTTTTAAGATTGGG
324 AATTGATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCACTCTTTTCAAGATT-GG
* * * * * * * *
725946 AACCAAGAACAAATTCCCTACGTTACGATACATGACATTGATGCTTTAGGGCCATAAGAAAA-GA
388 AACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCACAAGAAAAGGT
726010 TTTCTTTCCACTGTTTTTGAT
453 TTTCTTTCCACTGTTTTTGAT
* *
726031 AGAATCAAATTTTGTCTCTCAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCTTTTCA
1 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCTTTTCA
* * * * * * * *
726096 GGACTAGGCTCCATAAACATAGTCTTTTCAT----ATACACAATATTAACGTTTTGGTTTCGAAA
66 AGATTAGGCTCCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAA
* * * * * * * * * **
726157 GAAAGGCATTCTTCCTACTAATTTTTGTATAGTCTACGTTCATG-CTTCAAGTGATACAAACACA
131 GAAAGGCTTTC-TCCCACCAATTTTTATAAAGTCTAAGTTCGTGTC-TCAAATGAGACAAACATG
* * * * *
726221 GATTCTAGTAATGATCTTCATTCGTTTTGTGATTAGGTACTATAAACAAATTCTCCTCAAT-GAG
194 GATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAG-G
* * * * **
726285 ATAAATGATATTGAGGACTTTTTTCTGCATAGAAATCTTTTTTTTGCCCTATTTTCCAAAAAATC
258 ATAAATGATATTGATGA-TTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * * *
726350 AAAATTGATCCCTTAAATAAGACAAGCACCGATTCTCATAACAGTCTGCACTCTTTTTAAGATTG
322 AAAATTGATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCACTCTTTTCAAGATT-
* * *
726415 GGAACCAAGAACACATTCCTTTCATTTGGATACATGACATTGATGCTTTGAGGTCACAAGAAAAG
386 GGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCACAAGAAAAG
* *
726480 GTTTTCTTTCTACTGTTTTTGGT
451 GTTTTCTTTCCACTGTTTTTGAT
*
726503 AGAATTAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCTTTTCA
1 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCTTTTCA
* * ** * ** *
726568 GGACTAGGCTCCATAAACATAGTCTTCTCATAATCATACACGATATTGACGCTACGGTTTTGCAA
66 AGATTAGGCTCCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAA
* * * * * * * * * *
726633 GAAAGGCTTTTTTCCTACTAATTTTTGTATAGTCCACGTT-GATGCCTCAAATGAAACAAATATG
131 GAAAGGC-TTTCTCCCACCAATTTTTATAAAGTCTAAGTTCG-TGTCTCAAATGAGACAAACATG
* *
726697 GATTCTAGTAATGATCTTCATTCATTTT-TGATTAGGCACTATAAACACATTCTCCTTAATACGA
194 GATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGA
* * *
726761 TAAATGTTATTGATGATTTTTTTTTCAAGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
259 TAAATGATATTGATGATTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
* * * * *
726826 AATTAATCCCTTAAATAAGAAAAGCATC-ATTTCTCGTAACAGTCCCCACTATTTTTAAGATTGG
324 AATTGATCCCTTAAATAAGACAAGCATCGA-TTCTCGTAACAGTCTCCACTCTTTTCAAGATT-G
* * * * * *
726890 GAACCAAGAACAAATTCCCTACGTTAGGATACATGACATTGATGCTTTAGGGCCACAAGAAAAAG
387 GAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCACAAGAAAAGG
*
726955 TTTTCTTTCCACTATTTTTGAT
452 TTTTCTTTCCACTGTTTTTGAT
* * * *
726977 AGAATCAAATTTTGTCTCTCAAATGAGACAAACACTAATAGTCATACTAATCCCCATTCTTTTCA
1 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCTTTTCA
* * * * *
727042 GGACTAGGCTCCATAAACATAGTCTTTTCAT----ATACAC-ATTATTGACGCTTTGGTTTTGCA
66 AGATTAGGCTCCATAAACATAGTCTTCTCATAAGGATACACGA-TATTGATGCTTTGGTTTCGCA
* ** * * * * * * *
727102 AGAAAGGCTCTCCTCCTGCCAATTTTTGTATAGTCTATG-TCG-GTTCCTGAAGTGATACAAAAA
130 AGAAAGGCT-TTCTCCCACCAATTTTTATAAAGTCTAAGTTCGTG-T-CTCAAATGAGACAAACA
* * * *
727165 TGGATTCTAGTAATGATCTTCATTCGTTTTGTGATTAGGCACTATAAACACATTCT-TTTCAATG
192 TGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTT-ATTA
* * *
727229 GGATAAATGATATTAATGATTTTTTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTTCTTAAAA
256 GGATAAATGATATTGATGA-TTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAA
* * *
727294 TCAAAATTGATCCCTTAAATAAGACAAGCCTCGATTCTCGAAATAG--T-CAGCTCTTTTCAAGA
320 TCAAAATTGATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCA-CTCTTTTCAAGA
* * * * *
727356 TTAGGAACCAAGAACACATTCCATTCGTCAGGACACATGACATTGATCCTTTGGGGTCACAAGAA
384 TT-GGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCACAAGAA
*
727421 AAGGTTTTCTTTCCATTGTTTTTGAT
448 AAGGTTTTCTTTCCACTGTTTTTGAT
* * *
727447 AGCATCAAAGTTCGTCTCTTAAATAAGACAAACATTAATAGTCATACTAAT-CCCATTATTTTCA
1 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCTTTTCA
* * * * *
727511 AGATTAGGCTCCATAAACGTAGTTTTCTCATAAGGATACACAATTTTGATGCTTTGGTTTCGTAA
66 AGATTAGGCTCCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAA
* ** * * *
727576 GCAAGGCTTTCTTCTGACCAATTTTTATAAAGTCTAAGTTAGTGTCTCAAATGAGACATATATGG
131 GAAAGGCTTTC-TCCCACCAATTTTTATAAAGTCTAAGTTCGTGTCTCAAATGAGACAAACATGG
* *
727641 ATTCTACTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGAA
195 ATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGAT
* *
727706 AAATGATATTGATGATTTTCTTTTGCTTGAAAATCTTTTCTTTGCCCTATTTTCC-T----T-AA
260 AAATGATATTGATGATTTT-TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
* * * * *
727765 AA---A---C------AAGACATGCATTGATTCTAGTAACAGTCTCCATTCTTTTCAAGATTAGA
324 AATTGATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCACTCTTTTCAAGATT-GG
* * ** *
727818 AACCAAGAACAAATTCCCCTCATTAGGATACATGA-ATTGAAACTTTGGGGTGACAAGAAAAGGT
388 AACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCACAAGAAAAGGT
* * *
727882 TTTCCTTCCATTGTTTTTCAT
453 TTTCTTTCCACTGTTTTTGAT
* * * *
727903 AGAATCAAAATTTATCTCTTAAATAAGACAAACATTAATAG-CTATACTAA-CGCCAACTCTTTT
1 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTC-ATACTAATC-CCCATTCTTTT
* * * ** *
727966 TAGGATTAGGCTCCATAAACATAGTCTTCTCCTAAGGATACACGATATTGACACTTTGATTTCGC
64 CAAGATTAGGCTCCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGC
* * * *
728031 ATGAAAGGCTTTCTTCCTACCAATTTTTATAAAGTCTAAGTTCGTGTCTCAAATGAGTCAAATAT
129 AAGAAAGGCTTTC-TCCCACCAATTTTTATAAAGTCTAAGTTCGTGTCTCAAATGAGACAAACAT
* * * *
728096 GGGTTCTAGTAATGATCTTCATTCTTTTTGTGATTAAGCACTATAAACAC-CT-TCCTTATTAGG
193 GGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGG
* * *
728159 ATAAATGTTATTGATGATTTTTTTTTGCTTGGAAATCTTTTCTTTACCCTATTTTCCTTAAAATC
258 ATAAATGATATTGATGA-TTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * * * * * * *
728224 AAAATTAATCTCTTAAATACGACAAGCATCGATTTTTGTAATAGTCTCCA-TACTTTTTAGGATT
322 AAAATTGATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCACT-CTTTTCAAGATT
* * *
728288 AGGAACCAAGAACACATTCCCGTCATTAGGATACATGACATTGATACTTTGGGGTCACATGATAA
386 -GGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCACAAGA-AA
728353 A-GTTTTCTTTCCACTGTTTTTGAT
449 AGGTTTTCTTTCCACTGTTTTTGAT
* * *
728377 AGAATCAAAATTT-TCTCTTAAATAAGATAAACATTAATAGTCATACTAATCCCCATTTTTTTCA
1 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCTTTTCA
* * * * * * * *
728441 AGGTTAGACTCCATAAACATATTCTTCTCATCAGGAAACACAATATTGATGCTTTGGGTTCACAA
66 AGATTAGGCTCCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAA
* * ** * * *
728506 GAAAGGCTTTATTTCCACCAATTTTGGTAAAGTCTAAGTTCATGCCTCAACTGAGACAAACATGG
131 GAAAGGCTTT-CTCCCACCAATTTTTATAAAGTCTAAGTTCGTGTCTCAAATGAGACAAACATGG
* * * * * * * *
728571 GTT-TCAGTAATGATCTTCATTCCTTTTCTAATTAGGCACTATAAGCACATTCTCCTCAGTGGGA
195 ATTCT-AGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGA
* *
728635 TAAATGATATTGATGAATTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTCAAATCAA
259 TAAATGATATTGATGATTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
* * * * ** *
728700 AATTGATCCCTTAAATAAGACCAGCATTGATTCTCGAAATAGTCT--GTTTTTTTCAAGATTAGG
324 AATTGATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCACTCTTTTCAAGATT-GG
* *
728763 AATCAAGAACACATTCCCTT-AGTTAGGACACATGACATTGATGCTTTGGGGTCACAAGAAAAGG
388 AACCAAGAACACATTCCCTTCA-TTAGGATACATGACATTGATGCTTTGGGGTCACAAGAAAAGG
* *
728827 TTTTCTTTCTATTGTTTTTGAT
452 TTTTCTTTCCACTGTTTTTGAT
* * * *
728849 AGAATCAAAGTTCGTCTCTTAAATAAGACAAACATTAATAGTCTTACTAA-GCCCATTATTTTCA
1 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCTTTTCA
* * *
728913 AGATTAGGCTCCATAAACATAGTTTTCTCATAAGGATACACGATTTTGATGCTTTGGTTTCGTAA
66 AGATTAGGCTCCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAA
* * ** * *
728978 GAAAGGCTTCCTTTCGGCCAACTTTTATAAAGTCTAAGTTCCTGTCTCAAATGAGACAAACATGG
131 GAAAGGCTTTC-TCCCACCAATTTTTATAAAGTCTAAGTTCGTGTCTCAAATGAGACAAACATGG
* * * * * *
729043 GTTCTGGTAATGATCTTCATTCTTTTTGTGATTAGGCACGATAAACATATTCTACTTATTAGGAT
195 ATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGAT
* * *
729108 AAATGATATTGATGATTTTCTTTTACTTGGAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAA
260 AAATGATATTGATGATTTT-TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
* * * * * * *
729173 AA-TGAATCTCGTAAATACGACAAGCATCGACTT-TTGTAATAGTCTACACTCTTTTCAGGATTA
324 AATTG-ATCCCTTAAATAAGACAAGCATCGA-TTCTCGTAACAGTCTCCACTCTTTTCAAGATT-
* * * * * * *
729236 GGAACCAAGAACACAATCTCTTCAGTAAGATACATGACATTGATGCTTTTGGGTCATAAGAAAAA
386 GGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCACAAGAAAAG
* *
729301 GTTTT-TTT-CAATATTTTTGAT
451 GTTTTCTTTCCACTGTTTTTGAT
* *
729322 AGAATCAAAGTTTGTCTCTTAAATAAGGCAAACATTAATAGTCATACTAATCCCTA-T-TTTT--
1 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCTTTTCA
* * * * *
729383 ---TTAGG----AT-----TAGTC-T-TCATAAGGACACACGATATTAATACTTTGGTTTTGTAA
66 AGATTAGGCTCCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAA
* * * *
729434 GAAAGGCTTTCTTTCCACCAATTTTTATAAAGACTATGTTCATGTCTCAAATGAGACAAACATGG
131 GAAAGGCTTTC-TCCCACCAATTTTTATAAAGTCTAAGTTCGTGTCTCAAATGAGACAAACATGG
* * * * *
729499 ATTCTAGTAATGATCTTCATTCCTTTTGTGATTAGGAACTATAAACACATTCTCTTTAGTGGGAT
195 ATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGAT
* *
729564 AAATGATAGTGATGATTTTTTTTGCATGGAAATCTTTTCTTCT-CCCTATTTTCCATAAAATCAA
260 AAATGATATTGATGATTTTTTTTGCATGGAAATCTTTTCTT-TGCCCTATTTTCCTTAAAATCAA
* * * *
729628 AATTGATCCCTTAAATAAGACAAGCATGGATTCTCGTAATAGTCTCCATTCTTTTCAAAATTTGG
324 AATTGATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCACTCTTTTCAAGA-TTGG
* * * * * * * * *
729693 AACGAAGAACACTTTTCGTTCATTAGGATACATGACATCGATGCTCTGGTGTCGCAA-AAAGTGG
388 AACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCACAAGAAA-AGG
* ** * *
729757 TTTT-TTTTCACCCTTTCTGAC
452 TTTTCTTTCCACTGTTTTTGAT
* * * * * * *
729778 ATAATCAAAGTTTATCTTTTAAATAAGATAGACATAAATAGTCATACTAATCCCCATTCTTTTCC
1 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCTTTTCA
* * * * * ** *
729843 GGATTAGACACCCTAAAAATAGTCTTCTCATAAAAATACACGATATTGATGCTTTGGTTTTGCAA
66 AGATTAGGCTCCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAA
*
729908 GAAAGGCTTTCTTCCGACCAATTTTTATAAAGTCTAAGTTCGTGTCTCAAATGAGACAAACATGG
131 GAAAGGCTTTC-TCCCACCAATTTTTATAAAGTCTAAGTTCGTGTCTCAAATGAGACAAACATGG
* * *
729973 GTTCTAGGAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTGTCCGTT-TTAGGA
195 ATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC-TTATTAGGA
** * * *
730037 TAAATGATATAAATGATTTTCTTTTGCTTGGAAATCTTTTCTTTGTCCTATTTTTCTTAAAATCA
259 TAAATGATATTGATGATTTT-TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
* *
730102 AAATTGATCCCTTAAATAAGACAAGCATCTATTCTCATAACAGTCTCCACTCTTTTCAAGATTTG
323 AAATTGATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCACTCTTTTCAAGA-TTG
* * * * * * * *
730167 GAACCAAGAACATATTCCCTTTATTAGGATAGAGGACATTGATGCTTTGGTGTCGCAAAAAAAGA
387 GAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCACAAGAAAAGG
* ** *
730232 TTTTCTTTCAACCATTTTTGAC
452 TTTTCTTTCCACTGTTTTTGAT
* * * * * *
730254 AAAATCAAAATTTATCTCTTAAATAAGACAAACATGAATAGTCACACTAATCCCCATTTTTTTCA
1 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCTTTTCA
** * * * *
730319 AGGCTAGGCTCCATAAACATAGTCTTCTCTTCAGGAAACACGATATTGATGCTTTAGG-TTAGCA
66 AGATTAGGCTCCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTT-GGTTTCGCA
** ** * * * *
730383 AGAAAGGCTTTCTTCCCACCAATTTTGGTAAAGTCTAAGTTTATGCCTTAAATGAGATAAATATG
130 AGAAAGGCTTTC-TCCCACCAATTTTTATAAAGTCTAAGTTCGTGTCTCAAATGAGACAAACATG
* * ** *
730448 GATTCTAGTAATGATCTTCATTCCTTTTGTGATTAGGCACTATAAACACAGTCT-CTTCGGTGGG
194 GATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTT-ATTAGG
*
730512 ATAAATGATATTGATGATTTTTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAAAATCA
258 ATAAATGATATTGATGATTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
** * * * * *
730577 AAATTGATCCCTTAAATAAGACATTCACCGATTCTTGAAATAGTTTCCACTCTTTTCAAGATTAG
323 AAATTGATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCACTCTTTTCAAGATT-G
* * * *
730642 GAACCAAGAACACATTCCCTTCGTTAGGATACATGACATTAATGCTTTGGTGTTACAAGAAAAGG
387 GAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCACAAGAAAAGG
** *
730707 TTTTCTTTTTATTGTTTTTGAT
452 TTTTCTTTCCACTGTTTTTGAT
* * * *
730729 AGAATCAAAGTTTGTCTTTTAAAGAAGACAAACATTAATAGTCGTACTAA-CCCTATT-TTTTCA
1 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCTTTTCA
* * * * * *
730792 AGATTAGGATCCATAAACATAGT-TTTTGCACAAGGATACACGAGATTGGTGCTTTGGTTTCGTA
66 AGATTAGGCTCCATAAACATAGTCTTCT-CATAAGGATACACGATATTGATGCTTTGGTTTCGCA
* ** * * *
730856 AAAAAGGCTTTCTTCTGACCAATTTTTATATAGTCTAAGTCCGTGTCTCTAATGAGACAAACATA
130 AGAAAGGCTTTC-TCCCACCAATTTTTATAAAGTCTAAGTTCGTGTCTCAAATGAGACAAACAT-
* * *
730921 GG-TTCT-GATAATGATCTTCATTCTTTTTGTGATTAAGCACTATAAACACATTCTCCTTAGTAG
193 GGATTCTAG-TAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAG
* * * * *
730984 GATAACTGATATTGAAGATTTTCTTATT-CTTGAAAATCTTTTCTTTACCCTATTTTCCTTAAAA
257 GATAAATGATATTGATGATTTT-TT-TTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAA
* * * * *
731048 TCAAAATTAATCTCTTAAATATGACAAGCATTGATTCTTGTAACAGTCTCCACTCTTTTCAAGAT
320 TCAAAATTGATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCACTCTTTTCAAGAT
* * *
731113 TAGGAGCCAAGAACACAATCCATTCATTAGGATACATGACATTGATGCTTTGGGGTCACAAGAAA
385 T-GGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCACAAGAAA
* * *
731178 AAGTTTTCTTTCCACTGATTTTAAT
449 AGGTTTTCTTTCCACTGTTTTTGAT
* * *
731203 AAAATCAAATTTTGTCTCTTGAATAAGACAAACATTAATAGTCATACTAATCCCCATT-TTTT--
1 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCTTTTCA
* * * *
731265 ---TCAGG----AT-----TAGGC-T-TCATAAGGATACATGATA-TGATGCTTTGGTTTTGCAA
66 AGATTAGGCTCCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAA
* * * *
731315 GAAAGGCTTCCTCCTACCAATTTTTATAAAGTCTACGTTCGTGTCTCCAATGAGACAAACATGGA
131 GAAAGGCTTTCTCCCACCAATTTTTATAAAGTCTAAGTTCGTGTCTCAAATGAGACAAACATGGA
* * * *
731380 TTCTAGTAAGGATATTCATTCATTTTGTGATTAGGCACTATAAACATATTCTCCTTGTTAGGATA
196 TTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGATA
* * * * * ** * *
731445 AATGATATTGATAATTTTCCTTTCCTTGAAAATCTTTTCTTTGCTGTATTTTCCATAAAATTAAA
261 AATGATATTGATGATTTT-TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAA
* *
731510 ATTAATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCACTCTTTTCAAGATTAGGA
325 ATTGATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCACTCTTTTCAAGATT-GGA
* * *
731575 ACCAAGAACACATTCCCTTCGTTAGGATACATGACATTAATGCTTTGCGGTCACAAGAAAAGGTT
389 ACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCACAAGAAAAGGTT
* * *
731640 TTCTTTCTACTATTTTAGAT
454 TTCTTTCCACTGTTTTTGAT
* *
731660 AGAATCAAA----G--T-TTAAATAAGACAAACATTAATAGTCATACAAATCCCCATTTTTTTCA
1 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCTTTTCA
* * * ** * * *
731718 AAATTGGGCTCCATAAACATAGTTTTCTCATAAGGATACACGATATCAATGCGTTGGTTCCACAA
66 AGATTAGGCTCCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAA
**
731783 GAAAGGCTTTCTTCTGACCAATTTTTATAAAGTCTAAGTTCGTGTCTCAAATGAGACAAACATGG
131 GAAAGGCTTTC-TCCCACCAATTTTTATAAAGTCTAAGTTCGTGTCTCAAATGAGACAAACATGG
* * * * * *
731848 GTTCTAGCAATGATCTTTATTCATTTTGTAATTAGGCACTATAAACACATTGTCCTTTTTAGGAT
195 ATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGAT
* * *
731913 AAATGATATAGATGATTTTCTTTTGCTTGGAAATCTTTTCTTTGCGCTATTTTTCC-TAAAATCA
260 AAATGATATTGATGATTTT-TTTTGCATGGAAATCTTTTCTTTGCCCTA-TTTTCCTTAAAATCA
* * * * * *
731977 AAATTGATCTCTTAAGTGAGAC-AGCTTCGATTGTCGTGACAGTCTCCACTCTTTTCAAGATTTG
323 AAATTGATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCACTCTTTTCAAGA-TTG
* * * * * *
732041 GAACCAAGAACATATTCCCTTTATTAGGATACATGACATTGATGCTTTGGTGTCGCAAAAAAAGA
387 GAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCACAAGAAAAGG
* ** *
732106 TTTTCTTTCTACCATTTTTGAC
452 TTTTCTTTCCACTGTTTTTGAT
* * ** *
732128 A-AATTAAAAGTTTTTCTCTTAAATAAGACAAACAAGAATAGTCATACAAATCCCCATTCTTTTC
1 AGAA-TCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCTTTTC
* * * * ** * ** *
732192 AAGATTAGACACCCTAAAAATAGTCTTCTCATAAAAATACATGATATTGATGCTTTCATTTTGCA
65 AAGATTAGGCTCCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCA
* * **
732257 AGAACGACTTTCTTCCCACCAATTTTTATAAAGTCTAAACTCGTGTCTCAAATGAGACAAACATG
130 AGAAAGGCTTTC-TCCCACCAATTTTTATAAAGTCTAAGTTCGTGTCTCAAATGAGACAAACATG
* *
732322 GATTCTAGTAATGATATTCATTCATTTTGTGATTAGGTACTATAAACACATTCTCCTTATTAGGA
194 GATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGA
* * * *
732387 TAAACTGATATTGATGATTTTGTTTTGCTTGGAAATCTTTTCTTTGCCGTATTTTCCATCAAATC
259 TAAA-TGATATTGATGATTTT-TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * * * * *
732452 AAAATTAATCCCTTAGATAAGACAAGCAT-TAGTTCTCATAATAGTCCCCACTCTTTTCAAGATT
322 AAAATTGATCCCTTAAATAAGACAAGCATCGA-TTCTCGTAACAGTCTCCACTCTTTTCAAGATT
* * * * *
732516 AGAACCAAGAACACATTCCTTTCGTTAGGATACATGACATTAATGCTTTGGGGTCATAAGAAAAG
386 GGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCACAAGAAAAG
*
732581 GTTTT-TTTCCTACTGGTTTTGAT
451 GTTTTCTTTCC-ACTGTTTTTGAT
* * *
732604 AGAATCAAAGTTTATCTTTTAAATAAGACAAACATTAATAGTCGTACTAATCCCCATTCTTTTCA
1 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCTTTTCA
* *
732669 AGATTAGGCTCCACAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGCAA
66 AGATTAGGCTCCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAA
* *
732734 GAAAGGCTTTCTTCTATCC-ATTTTTATAAAGTCTAAGTTCGTGTCTCAAATGAGACAAACATGG
131 GAAAGGCTTTCTCCCA-CCAATTTTTATAAAGTCTAAGTTCGTGTCTCAAATGAGACAAACATGG
* ** * * * *
732798 GTTCTAGTAATGATCTTCATTGTTTTTGTGATTAGGCACTATAATCACATTCTCTTTTTTCGGAT
195 ATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGAT
* * ** *
732863 AAATGGTATTGATGATTTTCTTTTGCTTGGAAATCTTTTCTTTGCAGTATTTTCCATAAAATCAA
260 AAATGATATTGATGATTTT-TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
* * * * * *
732928 TATTAATCCCTTAGATAAGATAAGCATCGATTCTCGTAATAGTCTCTACTCTTTTCAAGATTAGG
324 AATTGATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCACTCTTTTCAAGATT-GG
* ** *
732993 AACGAAGAACACATTCTTTTCATTAGGATACATGACATTGATGCTTTGGGGTCATAA-AGAAAGG
388 AACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCACAAGA-AAAGG
* *
733057 TTTT-TTTCCTGCTGTTTTAGAT
452 TTTTCTTTCC-ACTGTTTTTGAT
* *
733079 ATAATCAAAGTTTGTCTTTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCTTTTCA
1 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCTTTTCA
* * *
733144 AGATTAGGCTCCATAAACATAGTATTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGCGA
66 AGATTAGGCTCCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAA
* *
733209 GAAAGGCTTTCTTTCAACCAATTTTTATAAAGTCTAAGTTCGTGTCTCAAATGAGACAAACAT-G
131 GAAAGGCTTTC-TCCCACCAATTTTTATAAAGTCTAAGTTCGTGTCTCAAATGAGACAAACATGG
* *
733273 AGTTCTAATAATGATCTTCATTC-TTTCTGTGGTTAGGCACTATAAACACATTCTCCTTATTAGG
195 A-TTCTAGTAATGATCTTCATTCATTT-TGTGATTAGGCACTATAAACACATTCTCCTTATTAGG
* * * * *
733337 ATAAATGATATTGATGATTTTCTTTTGCTTGAAAATCGTTTCTTTACCCTATTTTCCCTAAAATC
258 ATAAATGATATTGATGATTTT-TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * * * * * * *
733402 AAAATTAATCTCTTAAATATGACATGTATCGATTCTTGTAACAGTCTCCACTCTTTTTAGGATTA
322 AAAATTGATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCACTCTTTTCAAGATT-
* * * *
733467 GGAACCAAGAACACATTTCCTTCATTAGGATACATGAAATTGATGCTTTGAGTTCACAAGAAGAA
386 GGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCACAAGAA-AA
* *
733532 -GTTTTTTTTCCACTATTTTTGAT
450 GGTTTTCTTTCCACTGTTTTTGAT
* * *
733555 AGAATAAAAGTTTGTCTCTTAAATAAGACAAATATTAATAGTCATACTAATCCCCATTTTTTTCA
1 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCTTTTCA
* * * * * *
733620 GGATTAGGCTCCATAAACATAGTCTTCTCATAAGGATACACAATACTGACGCTTTGGTTTTGCAC
66 AGATTAGGCTCCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAA
* * * * ** * *
733685 GAAAGGCTTTTTTCCCAGCAATTTTTGTAAAGTCTAAGTTCATACCTCGAATGAGACAAACATGA
131 GAAAGGC-TTTCTCCCACCAATTTTTATAAAGTCTAAGTTCGTGTCTCAAATGAGACAAACATGG
* * *
733750 ATTCTAGTAATGATCTTTATTCCTTTTGTGATTAGGCACTATAAACACATTCTCCTT-TGTGGGA
195 ATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTAT-TAGGA
733814 TAAATGATATTGATGATTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
259 TAAATGATATTGATGATTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
733879 AATTGATCCCCTTAAA
324 AATTGAT-CCCTTAAA
733895 ATCATATCAC
Statistics
Matches: 13117, Mismatches: 1977, Indels: 686
0.83 0.13 0.04
Matches are distributed among these distances:
450 38 0.00
451 5 0.00
453 1 0.00
454 5 0.00
455 218 0.02
456 327 0.02
457 516 0.04
458 39 0.00
459 30 0.00
460 358 0.03
461 17 0.00
462 122 0.01
463 70 0.01
464 4 0.00
465 48 0.00
466 148 0.01
467 33 0.00
468 176 0.01
469 479 0.04
470 299 0.02
471 350 0.03
472 830 0.06
473 1699 0.13
474 1504 0.11
475 1783 0.14
476 2872 0.22
477 254 0.02
478 357 0.03
479 283 0.02
480 243 0.02
481 9 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (473 bp):
AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCTTTTCA
AGATTAGGCTCCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAA
GAAAGGCTTTCTCCCACCAATTTTTATAAAGTCTAAGTTCGTGTCTCAAATGAGACAAACATGGA
TTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGATA
AATGATATTGATGATTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAA
TTGATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCACTCTTTTCAAGATTGGAAC
CAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCACAAGAAAAGGTTTT
CTTTCCACTGTTTTTGAT
Found at i:720131 original size:158 final size:157
Alignment explanation
Indices: 719965--720620 Score: 379
Period size: 159 Copynumber: 4.1 Consensus size: 157
719955 TAATTTTCTC
*
719965 ATAAGGATACACGATATTGATGCTTTAGGTTCGTAAAAAAGGCTTTCTTCCCACCAATTTTTATA
1 ATAAGGATACACGATATTGATGCTTTAGGTTCGCAAAAAAGGCTTTCTTCCCACCAATTTTTATA
* * *
720030 AAGTCTAAGTTTG-TGTCTCAAATGAGACAAACATGGATTCAAGTAATGATCTTCATTCATTCTG
66 AAATCAAAG-TTGATGTCTCAAATAAGACAAACATGGATTCAAGTAA-GATCTTCATTCATTCTG
*
720094 TGATTAGGCACTATAAACACATTCTCTTT
129 TGATTAGGCACCATAAACACATTCTCTTT
* * * ** * ** * * *** *
720123 ATAAGGATAAATGATATTGATGATTTATTTTTGCATGGAAATGTTTTCTT-TGGCCGATTTTCCT
1 ATAAGGATACACGATATTGATGCTTTAGGTTCGCA-AAAAAGGCTTTCTTCCCACCAATTTT--T
* * ** * * * *
720187 -TAAAATCAAAGTTGATCCGT-T-AAATAAGACAAGCATTGATTCTCGTAACAGTCTGCACTCTT
63 ATAAAATCAAAGTTGAT--GTCTCAAATAAGACAAACATGGATTCAAGTAAGA-TCTTCATTCAT
** * *
720249 TAC-AAGATTAGG-ATCCA-AGAACACATTCCCTTC
125 T-CTGTGATTAGGCA-CCATA-AACACATTCTCTTT
* * * * * * * * *** *
720282 A-ATAGGATACATGACACTGATGCTTTGGGGTCACAAGAAAAGGTTTTCTTTCCACCGGCTTTGA
1 ATA-AGGATACACGATATTGATGCTTTAGGTTCGCAA-AAAAGGCTTTCTTCCCACCAATTTTTA
* * * * * * ** *
720346 CAAAATCAAAGTTTATTTCTCAAATAATACAAACATGAATAGTC-A-TACAAATCCCCATTCTTT
64 TAAAATCAAAGTTGATGTCTCAAATAAGACAAACATGGAT--TCAAGTA-AGATCTTCATTCATT
* * *
720409 ATAG-GATTAGACACCATAAA-A-ATTGTCTTCT
126 CT-GTGATTAGGCACCATAAACACATTCTCTT-T
* * *
720440 CATAAGGATACACGATATTGATGCTTT-GGTTTTGCAAGAAAGGCTTTCTTCCAACCAATTTTTA
1 -ATAAGGATACACGATATTGATGCTTTAGG-TTCGCAAAAAAGGCTTTCTTCCCACCAATTTTTA
* * * * * * *
720504 TAAAGTCTAAGCTGATGTCTTAAATGAGACAAACATGGATTTAAGTAATGATCTTCATTCATTTT
64 TAAAATCAAAGTTGATGTCTCAAATAAGACAAACATGGATTCAAGTAA-GATCTTCATTCATTCT
* * *
720569 GTGATTAGGCACTATAAATACATTCTCCTT
128 GTGATTAGGCACCATAAACACATTCTCTTT
* * *
720599 ATTAGGATAAACGGTATTGATG
1 ATAAGGATACACGATATTGATG
720621 ATTTTCTTTT
Statistics
Matches: 360, Mismatches: 105, Indels: 66
0.68 0.20 0.12
Matches are distributed among these distances:
156 1 0.00
157 10 0.03
158 141 0.39
159 184 0.51
160 20 0.06
161 4 0.01
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Consensus pattern (157 bp):
ATAAGGATACACGATATTGATGCTTTAGGTTCGCAAAAAAGGCTTTCTTCCCACCAATTTTTATA
AAATCAAAGTTGATGTCTCAAATAAGACAAACATGGATTCAAGTAAGATCTTCATTCATTCTGTG
ATTAGGCACCATAAACACATTCTCTTT
Found at i:720991 original size:158 final size:158
Alignment explanation
Indices: 720347--720991 Score: 400
Period size: 158 Copynumber: 4.1 Consensus size: 158
720337 CGGCTTTGAC
* * * * *
720347 AAAATCAAAGTTTATTTCTCAAATAATACAAACATGAATAGTCATACA-AATCCCCATTCTTTAT
1 AAAATCAAAGTTGATTTCTTAAATAAGACAAACATGAATTGTCATA-ATAATCCCCATTCTTTTT
** * *
720411 AGGATTAGACACCATAAAAATTGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGCA
65 AGGATTAGACACCATAAAAATAATCTCCTCATAAGGATACACGATATTGATGATTTGGTTTTGCA
* ** *
720476 AGAAAGGCTTTCTTCCAACCAATTTTTAT
130 AGAAAGGTTTTCTTCCTGCCAATTTTTGT
* * * * * * * * ** *
720505 AAAGTCTAAGCTGATGTCTTAAATGAGACAAACATGGATT-TAAGTAATGATCTTCATTCATTTT
1 AAAATCAAAGTTGATTTCTTAAATAAGACAAACATGAATTGTCA-TAATAATCCCCATTCTTTTT
* * * * * * * * * **
720569 -GTGATTAGGCACTATAAATACATTCTCCTTATTAGGATAAACGGTATTGATGATTTTCTTTTGC
65 AG-GATTAGACACCATAAAAATAATCTCCTCATAAGGATACACGATATTGATGATTTGGTTTTGC
*** *
720633 AAGGAAATCATTTCTT--TGGCCTATTTTCAT-T
129 AA-GAAAGGTTTTCTTCCT-GCCAATTTT--TGT
* * * * * *
720664 AAAATCAAAATTGA-TCCTTTAAATAAGACAAGCATTG-ATTCTCATAATAGTCTCCATTCTTTT
1 AAAATCAAAGTTGATTTC-TTAAATAAGACAAACA-TGAATTGTCATAATAATCCCCATTCTTTT
* * * * * * * * * * * *
720727 CAAGTTTAGGA-TCCA-AGAACACATTC-CCTTCATTAA-GCTACATGACATTGATGCTTTGG-G
64 TAGGATTA-GACACCATA-AAAATAATCTCC-TCA-TAAGGATACACGATATTGATGATTTGGTT
** * * * *** *
720787 CCGTAAGAAAAGGTTTTGTTTCTG-TTGTTTTTGAC
125 TTGCAAG-AAAGGTTTTCTTCCTGCCAATTTTTG-T
* *
720822 AAAATCAAAGTTTATTTCTTAAATAAGACAAACATGAATTGTCATACTAATCCCCATTCTTTTTA
1 AAAATCAAAGTTGATTTCTTAAATAAGACAAACATGAATTGTCATAATAATCCCCATTCTTTTTA
* * *
720887 GGATTAGACACCATAAAAATAATATTCTCATAAGGATACACGATATTGACGATTTGGTTTTGCAA
66 GGATTAGACACCATAAAAATAATCTCCTCATAAGGATACACGATATTGATGATTTGGTTTTGCAA
720952 GAAAGGTTTTCTTCCTGCCAATTTTTGT
131 GAAAGGTTTTCTTCCTGCCAATTTTTGT
* *
720980 AAAGTCTAAGTT
1 AAAATCAAAGTT
720992 CGTGCCTCAA
Statistics
Matches: 348, Mismatches: 111, Indels: 56
0.68 0.22 0.11
Matches are distributed among these distances:
156 1 0.00
157 12 0.03
158 227 0.65
159 99 0.28
160 9 0.03
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.36
Consensus pattern (158 bp):
AAAATCAAAGTTGATTTCTTAAATAAGACAAACATGAATTGTCATAATAATCCCCATTCTTTTTA
GGATTAGACACCATAAAAATAATCTCCTCATAAGGATACACGATATTGATGATTTGGTTTTGCAA
GAAAGGTTTTCTTCCTGCCAATTTTTGT
Found at i:734435 original size:841 final size:845
Alignment explanation
Indices: 733071--734735 Score: 2450
Period size: 841 Copynumber: 2.0 Consensus size: 845
733061 TTTCCTGCTG
* * *
733071 TTTTAGATATAATCAAAGTTTGTCTTTTAAATAAGACAAACATTAATAGTCATACTAATCCCCAT
1 TTTTAGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCACAT
* *
733136 TCTTTTCAAGATTAGGCTCCATAAACATAGTATTCTCATAAGGATACATGATATTGATGCTTTGG
66 TCTTTTCAAGATTAGGCTCCATAAACATAGTATTCTCATAAAGATACATGATATTAATGCTTTGG
* ** * * * *
733201 TTTCGCGAGAAAGGCTTTCTTTCAACCAATTTTTATAAAGTCTAAGTTCGTGTCTCAAATGAGAC
131 TTTCGCAAGAAAGGCTTTCTCCCAACCAATTGTTATAAAGTCTAAGTTCGTGCCGCAAATAAGAC
*
733266 AAACATGAGTTCTAATAATGATCTTCATTCTTTCTGTGGTTAGGCACTATAAACACATTCTCCTT
196 AAACATGAGTTCTAATAACGATCTTCATTCTTTCTGTGGTTAGGCAC-AT----A-A------TT
* * *
733331 ATTAGGATAAATGATATTGATGATTTTCTTTTGCTTGAAAATCGTTTCTTTACCCTATTTTCCCT
249 ATTAGGATAAATGATATAGATGATTTTCTTTTGCATGAAAATCGTTTCTTCACCCTATTTTCCCT
* * * * *
733396 AAAATCAAAATTAATCTCTTAAATATGACATGTATCGATTCTTGTAACAGTCTCCACTCTTTTTA
314 AAAATCAAAATTAATCCCTTAAATAAGACAAGTATCGATTCTTGTAACAGCCTCCACTCTTTTCA
* * *
733461 GGATTAGGAACCAAGAACACATTTCCTTCATTAGGATACATGAAATTGATGCTTTGAGTTCACAA
379 GGATTAGGAACCAAAAACACATTCCCTTCATTAGGATACATGAAATTAATGCTTTGAGTTCACAA
* * * *
733526 GAAGAAGTTTTTTTTCCACTATTTTTGATAGAATAAAAGTTTGTCTCTTAAATAAGACAAATATT
444 GAAAAAGTTTTCTTTCCACTATTTTTGATAGAATAAAAGTTTGTCTATTAAATAAGACAAACATT
733591 AATAGTCATACTAATCCCCATTTTTTTCAGGATTAGGCTCCATAAACATAGTCTTCTCATAAGGA
509 AATAGTCATACTAATCCCCATTTTTTTCAGGATTAGGCTCCATAAACATAGTCTTCTCATAAGGA
* *
733656 TACACAATACTGACGCTTTGGTTTTGCACGAAAGGCTTTTTTCCCAGCAATTTTTGTAAAGTCTA
574 TACACAATACTGACGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCAGCAATTTTTGTAAAGTCTA
* *
733721 AGTTCATACCTCGAATGAGACAAACATGAATTCTAGTAATGATCTTTATTCCTTTTGTGATTAGG
639 AGTTCATACCTCAAATGAGACAAACATGAATTCTAGTAATGATCTTTATTCCTTTCGTGATTAGG
* * *
733786 CACTATAAACACATTCTCCTTTGTGGGATAAATGATATTGATGATTTTTTTT-GCATGGAAATCT
704 CACTATAAACACATTCTCCTTTGCGAGATAAATGATATTGATGATTTTTTTTGGCATGAAAATCT
* *
733850 TTTCTTTGCCCTATTTTCCTTAAAATCAAAATTGATCCCCTTAAAATCATATCACAAGAAAAGGT
769 TTTCTTTGCCCTATTTTCCCTAAAATCAAAATTAAT-CCCTTAAAATCATATCACAAGAAAAGGT
733915 TTTCCTTTTACTA
833 TTTCCTTTTACTA
* * *
733928 TTTTTGATAGAATCAAAGTTTGTCTCTTACATAAGGCAAACATTAATAGTCATACTAATCCACAT
1 TTTTAGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCACAT
* *
733993 TCTTTTCAAGATTAGGCTCCATAAACATATTTTTCTCATAAAGATACATGATATTAATGCTTTGG
66 TCTTTTCAAGATTAGGCTCCATAAACATAGTATTCTCATAAAGATACATGATATTAATGCTTTGG
* * * *
734058 TTTCGTAAGAAAGGCTTTCTCCCTACCAATTGTTGTAAAGTCTAAGTTCGTGCCGCGAATAAGGA
131 TTTCGCAAGAAAGGCTTTCTCCCAACCAATTGTTATAAAGTCTAAGTTCGTGCCGCAAATAA-GA
* *
734123 -AAATATG-GATTCTAGTAACGATCTTCATTCATTT-TG-GGATTAGGCAC-T-A-TA-TAGGAT
195 CAAACATGAG-TTCTAATAACGATCTTCATTC-TTTCTGTGG-TTAGGCACATAATTATTAGGAT
* * * * *
734180 AAATGATATAGATGATTTTCTTTTGGATGAAAATCTTTTCTTCGCCCTATTTTCCTTGAAATCAA
257 AAATGATATAGATGATTTTCTTTTGCATGAAAATCGTTTCTTCACCCTATTTTCCCTAAAATCAA
* * * *
734245 AATTCATCCCTTAAATAAGACAAGTTTCGATT-TTCGTAACAGCCTCTATTCTTTTCAGGATTAG
322 AATTAATCCCTTAAATAAGACAAGTATCGATTCTT-GTAACAGCCTCCACTCTTTTCAGGATTAG
* * *
734309 GAACCAAAAACACATTCCCTTTATTAGGATACATGACATTAATGCTTTGGGTTCACAAGAAAAAG
386 GAACCAAAAACACATTCCCTTCATTAGGATACATGAAATTAATGCTTTGAGTTCACAAGAAAAAG
* * *
734374 TTTTCTTTCCACTGTTTTTGATGGAATCAAAGTTTGTCTATTAAATAAGACAAACATTAATAGTC
451 TTTTCTTTCCACTATTTTTGATAGAATAAAAGTTTGTCTATTAAATAAGACAAACATTAATAGTC
* *
734439 ATACTAATCCCCTTTTTTTTCAGGATTAGGCTCCATAAACATAGTCTTCTCATAAGGATACATAA
516 ATACTAATCCCCATTTTTTTCAGGATTAGGCTCCATAAACATAGTCTTCTCATAAGGATACACAA
* * *
734504 TATTGACGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCATCAATTTTTGTGAAGTCTAAGTTCAT
581 TACTGACGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCAGCAATTTTTGTAAAGTCTAAGTTCAT
* *
734569 ACCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCCTTTCGTGATTCGGCACTATA
646 ACCTCAAATGAGACAAACATGAATTCTAGTAATGATCTTTATTCCTTTCGTGATTAGGCACTATA
*
734634 AACACATTGTCCTTTGCGAGATAAATGATATTGATGATTTTTTTTGGCATGAAAATCTTTTCTTT
711 AACACATTCTCCTTTGCGAGATAAATGATATTGATGATTTTTTTTGGCATGAAAATCTTTTCTTT
*
734699 GCCCTATTTTCCCTGAAATCAAAATTAATCCCTTAAA
776 GCCCTATTTTCCCTAAAATCAAAATTAATCCCTTAAA
734736 TAAGACAAAC
Statistics
Matches: 730, Mismatches: 72, Indels: 28
0.88 0.09 0.03
Matches are distributed among these distances:
840 2 0.00
841 466 0.64
842 46 0.06
849 1 0.00
855 1 0.00
856 3 0.00
857 206 0.28
858 5 0.01
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (845 bp):
TTTTAGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCACAT
TCTTTTCAAGATTAGGCTCCATAAACATAGTATTCTCATAAAGATACATGATATTAATGCTTTGG
TTTCGCAAGAAAGGCTTTCTCCCAACCAATTGTTATAAAGTCTAAGTTCGTGCCGCAAATAAGAC
AAACATGAGTTCTAATAACGATCTTCATTCTTTCTGTGGTTAGGCACATAATTATTAGGATAAAT
GATATAGATGATTTTCTTTTGCATGAAAATCGTTTCTTCACCCTATTTTCCCTAAAATCAAAATT
AATCCCTTAAATAAGACAAGTATCGATTCTTGTAACAGCCTCCACTCTTTTCAGGATTAGGAACC
AAAAACACATTCCCTTCATTAGGATACATGAAATTAATGCTTTGAGTTCACAAGAAAAAGTTTTC
TTTCCACTATTTTTGATAGAATAAAAGTTTGTCTATTAAATAAGACAAACATTAATAGTCATACT
AATCCCCATTTTTTTCAGGATTAGGCTCCATAAACATAGTCTTCTCATAAGGATACACAATACTG
ACGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCAGCAATTTTTGTAAAGTCTAAGTTCATACCTC
AAATGAGACAAACATGAATTCTAGTAATGATCTTTATTCCTTTCGTGATTAGGCACTATAAACAC
ATTCTCCTTTGCGAGATAAATGATATTGATGATTTTTTTTGGCATGAAAATCTTTTCTTTGCCCT
ATTTTCCCTAAAATCAAAATTAATCCCTTAAAATCATATCACAAGAAAAGGTTTTCCTTTTACTA
Done.