Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold398
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1204187
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 5 of 7
Found at i:734908 original size:475 final size:468
Alignment explanation
Indices: 733901--735767 Score: 2066
Period size: 475 Copynumber: 4.0 Consensus size: 468
733891 TAAAATCATA
* * * * *
733901 TCACAAGAAAAGGTTTTCCTTT-TACTATTTTTGATAGAATCAAAGTTTGTCTCTTACATAAGGC
1 TCACAAGAAAAGGTTTT--TTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTATTAAATAAGAC
* * * * *
733965 AAACATTAATAGTCATACTAATCCACATTCTTTTCAAGATTAGGCTCCATAAACATATTTTTCTC
64 AAACATTAATAGTCATACTAATCCCCTTTTTTTTC-AGATTAGGCTCCATAAACATAGTCTTCTC
* * * * * * *
734030 ATAAAGATACATGATATTAATGCTTTGGTTTCGTAAGAAAGGCTTTC-TCCCTACCAATTGTTGT
128 ATAAGGATACACGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCC-ATCAATTTTTGT
* * * * *
734094 AAAGTCTAAGTTCGTGCCGCGAATAAGGA-AAATATGGATTCTAGTAACGATCTTCATTCATTTT
192 AAAGTCTAAGTTCGT-CCTCAAATAA-GACAAACATGGATTCTAGTAATGATCTTCATTC-CTTT
* *
734158 GGGATTAGGCACTAT------A-------TAGGATAAATGATATAGATGATTTTCTTTTGGATGA
254 GTGATTAGGCACTATAAACACATTTCCTTTAGGATAAATGATATTGATGATTTT-TTTTGGATGA
**
734210 AAATCTTTTCTTCGCCCTATTTTCCTTGAAATCAAAATTCATCCCTTAAATAAGACAAGTTTCGA
318 AAATCTTTTCTTCGCCCTATTTTCCTTGAAATCAAAATTCATCCCTTAAATAAGACAAGCATCGA
* * * * * * * *
734275 TTTTCGTAACAGCCTCTATTCTTTTCAGGATTAGGAACCAAAAACACATTCCCTTTATTAGGATA
383 TTCTCATAATAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCCTTCATTTGGATA
* * *
734340 CATGACATTAATGCTTTGGGT
448 CATAACATTGATGCTTTGGGG
* *
734361 TCACAAGAAAAAGTTTTCTTTCCACTGTTTTTGATGGAATCAAAGTTTGTCTATTAAATAAGACA
1 TCACAAGAAAAGGTTTT-TTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTATTAAATAAGACA
734426 AACATTAATAGTCATACTAATCCCCTTTTTTTTCAGGATTAGGCTCCATAAACATAGTCTTCTCA
65 AACATTAATAGTCATACTAATCCCCTTTTTTTTCA-GATTAGGCTCCATAAACATAGTCTTCTCA
** * *
734491 TAAGGATACATAATATTGACGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCATCAATTTTTGTGA
129 TAAGGATACACGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCATCAATTTTTGTAA
* * *
734556 AGTCTAAGTTCATACCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCCTTTCGTG
194 AGTCTAAGTTCGT-CCTCAAATAAGACAAACATGGATTCTAGTAATGATCTTCATTCCTTT-GTG
* *
734621 ATTCGGCACTATAAACACATTGTCCTTTGCGAGATAAATGATATTGATGATTTTTTTTGGCATGA
257 ATTAGGCACTATAAACACATT-TCCTTT-AG-GATAAATGATATTGATGATTTTTTTTGG-ATGA
* * * *
734686 AAATCTTTTCTTTGCCCTATTTTCCCTGAAATCAAAATTAATCCCTTAAATAAGACAAACATCGA
318 AAATCTTTTCTTCGCCCTATTTTCCTTGAAATCAAAATTCATCCCTTAAATAAGACAAGCATCGA
* * * **
734751 TTCTCGTAATA-TCTCCACTCTTTTCAAGATTAGGAACCAAGAACACA-TCATTTTC-TTTAGGA
383 TTCTCATAATAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTC-CCTTCATTT-GGA
734813 TACATAACATTGATGCTTTGGGG
446 TACATAACATTGATGCTTTGGGG
* * *
734836 TCATAAGAAAAGGTTTTTTTCCTACTGTTTTTGATAGAATTAAAGTTTGTCTTTTAAATAAGACA
1 TCACAAGAAAAGGTTTTTTTCC-ACTGTTTTTGATAGAATCAAAGTTTGTCTATTAAATAAGACA
* *
734901 AACATTAATAGTCATACTAAT-CCCTATTCTTTTCCAGATTAGGCTCCATAAACATAGTTTTCTC
65 AACATTAATAGTCATACTAATCCCCT-TT-TTTTTCAGATTAGGCTCCATAAACATAGTCTTCTC
* * *
734965 ATAAGGATACACGATATTGATGCTTTGGTTTTGTAAGAAAGGCTTTCTTCCGATCAATTTTTATA
128 ATAAGGATACACGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCATCAATTTTTGTA
* * * * * *
735030 AAATTTAAGTTTGTGTCTCAAATAAGACAAACAAGGGTTCTAGTAATGATCTTCATTCTCTTTGT
193 AAGTCTAAGTTCGT-CCTCAAATAAGACAAACATGGATTCTAGTAATGATCTTCATTC-CTTTGT
** *
735095 GATTAGGCACTATAAACACATTCTCCTTATTAGGATAAATGATATTGATGATTTATTTTTACAAG
256 GATTAGGCACTATAAACACATT-TCC-T-TTAGGATAAATGATATTGATGATTT-TTTTTGGATG
* * * * * * * ** *
735160 -GAATCTTTTCTTTGCGCTATTTTCATTAAAATCAAAGCTT-ATCCCATAAATAAGATGAGCATT
317 AAAATCTTTTCTTCGCCCTATTTTCCTTGAAATCAAA-ATTCATCCCTTAAATAAGACAAGCATC
* *
735223 GATTCTCATAATAGTCTCCATTCTTTTCAAGATT-GAGAACCAACAACATATTCCCTTCATTTGG
381 GATTCTCATAATAGTCTCCATTCTTTTCAAGATTAG-GAACCAAAAACACATTCCCTTCATTTGG
* * *
735287 ATACA-AGAGATTGTTGCTTTGGTG
445 ATACATA-ACATTGATGCTTTGGGG
* * * **
735311 TCACAAGAAAAGGTTCTATTTCCACCGTTTTTGATAAAATCAAAGTTTGTCTCCTAAATAAGACA
1 TCACAAGAAAAGGTT-TTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTATTAAATAAGACA
* * * * *
735376 AAC-TTGAATAGTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATCAACATAGTCTTTTC
65 AACATT-AATAGTCATACTAATCCCCTTTTTTTTC-AGATTAGGCTCCATAAACATAGTCTTCTC
* * *
735440 ATAAGGATACACGATATTGATGCATTGGTTTCGCAAGAAAGGCTTTC-TCCCTACCAATTTTTGT
128 ATAAGGATACACGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCC-ATCAATTTTTGT
* * * * *
735504 AAAGTCTAAGTTCGTGCTGCAAATAAGGCAAATATGGATTCTAGTAACGATCTTCATTCATTTTG
192 AAAGTCTAAGTTCGTCCT-CAAATAAGACAAACATGGATTCTAGTAATGATCTTCATTC-CTTTG
* *
735569 TGATTATGCACTAT------A-------TAGGATAAATGATATTGTTGATTTTTTTTGGATGAAA
255 TGATTAGGCACTATAAACACATTTCCTTTAGGATAAATGATATTGATGATTTTTTTTGGATGAAA
* * ** *
735621 ATCTTTTCTTCGCCCTATTTTTCTTGAAATCAAAATTCATCTCTTAAATAAGACAAGTTTTGATT
320 ATCTTTTCTTCGCCCTATTTTCCTTGAAATCAAAATTCATCCCTTAAATAAGACAAGCATCGATT
* * * *
735686 CTCATAATAGTCTCGATTCTTTTCAGGATTAAGAACCAAAAACACATTCCCTTCATTTGGATAAA
385 CTCATAATAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCCTTCATTTGGATACA
*
735751 TGACATTGATGCTTTGG
450 TAACATTGATGCTTTGG
735768 TAGAACCAAA
Statistics
Matches: 1198, Mismatches: 162, Indels: 95
0.82 0.11 0.07
Matches are distributed among these distances:
458 9 0.01
459 155 0.13
460 221 0.18
461 4 0.00
466 1 0.00
469 1 0.00
474 88 0.07
475 593 0.49
476 124 0.10
477 2 0.00
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (468 bp):
TCACAAGAAAAGGTTTTTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTATTAAATAAGACAA
ACATTAATAGTCATACTAATCCCCTTTTTTTTCAGATTAGGCTCCATAAACATAGTCTTCTCATA
AGGATACACGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCATCAATTTTTGTAAAG
TCTAAGTTCGTCCTCAAATAAGACAAACATGGATTCTAGTAATGATCTTCATTCCTTTGTGATTA
GGCACTATAAACACATTTCCTTTAGGATAAATGATATTGATGATTTTTTTTGGATGAAAATCTTT
TCTTCGCCCTATTTTCCTTGAAATCAAAATTCATCCCTTAAATAAGACAAGCATCGATTCTCATA
ATAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCCTTCATTTGGATACATAACAT
TGATGCTTTGGGG
Found at i:735477 original size:159 final size:158
Alignment explanation
Indices: 734292--735479 Score: 435
Period size: 158 Copynumber: 7.5 Consensus size: 158
734282 AACAGCCTCT
* * * * * * * * *
734292 ATTCTTTTCAGGATTAGGAACCAAAAACACATTCCCTTT-ATTAGGATACATGACATTAATGCTT
1 ATTCTTTTCAAGATTAGGCACCATAAACATAGT-CTTTTCATTAGGATACACGATATTGATGCTT
* * * ** **
734356 TGGGTTCACAAGAAAAAGTTTTCTTTCC-ACTGTTTTTGATGGAATCAAAGTTTGTCTATTAAAT
65 TGGTTTCACAAG-AAAAGGTTT-TTTCCGACCGTTTTTGATAAAATCAAAGTTTGTCTCCTAAAT
*
734420 AAGACAAACATTAATAGTCATACTAATCCCC
128 AAGACAAACATTAATAGTCATAATAATCCCC
* * * * * * ** *
734451 TTTTTTTTCAGGATTAGGCTCCATAAACATAGTCTTCTCATAAGGATACATAATATTGACGCTTT
1 ATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTTTCATTAGGATACACGATATTGATGCTTT
** * * ** * * * ** *
734516 GGTTTTGCAAG-AAAGGCTTTCTTCCCATCAATTTTTG-TGAAGTCTAAGTTCAT-ACCTCAAAT
66 GGTTTCACAAGAAAAGG-TTTTTTCCGA-CCGTTTTTGATAAAATCAAAGTTTGTCTCCT-AAAT
* ** * ***
734578 GAGACAAACATGGAT--TCTAGTAATGATCTTT
128 AAGACAAACATTAATAGTC-A-TAATAATCCCC
* ** * * * * * * * *
734609 ATTCCTTTCGTGATTCGGCACTATAAACACATTGTCCTTTGC--GA-GATAAATGATATTGATGA
1 ATTCTTTTCAAGATTAGGCACCAT-AA-ACATAGT-CTTTTCATTAGGATACACGATATTGATGC
** ** * ** * * ** * * **
734671 TTTTTTTTGGCATGAAAATCTTTTCTT-TG-CCCTATTTTCCCTGAAATCAAAATTAATC-CCTT
63 TTTGGTTTCACAAGAAAAGGTTTT-TTCCGACCGT-TTTT-GATAAAATCAAAGTTTGTCTCC-T
** ** * *
734733 AAATAAGACAAACATCGATTCTCGTAAT-ATCTCC
124 AAATAAGACAAACATTAATAGTCATAATAATCCCC
* * * * ** *
734767 ACTCTTTTCAAGATTAGGAACCA-AGAACACA-TCATTTTCTTTAGGATACATAACATTGATGCT
1 ATTCTTTTCAAGATTAGGCACCATA-AACATAGTC-TTTTCATTAGGATACACGATATTGATGCT
** * * * * * **
734830 TTGGGGTCATAAGAAAAGGTTTTTTTCCTACTGTTTTTGATAGAATTAAAGTTTGTCTTTTAAAT
64 TTGGTTTCACAAGAAAAGG-TTTTTTCCGACCGTTTTTGATAAAATCAAAGTTTGTCTCCTAAAT
* *
734895 AAGACAAACATTAATAGTCATACTAATCCCT
128 AAGACAAACATTAATAGTCATAATAATCCCC
* * *
734926 ATTCTTTTCCAGATTAGGCTCCATAAACATAGT-TTTCTCATAAGGATACACGATATTGATGCTT
1 ATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTT-TCATTAGGATACACGATATTGATGCTT
*** * ** ** *
734990 TGGTTTTGTAAG-AAAGGCTTTCTTCCGATCAATTTTT-ATAAAATTTAAGTTTGTGT-CTCAAA
65 TGGTTTCACAAGAAAAGG-TTTTTTCCGA-CCGTTTTTGATAAAATCAAAGTTTGTCTCCT-AAA
** * **
735052 TAAGACAAAC---AAGGGTTCTAGTAATGATCTTC
127 TAAGACAAACATTAATAG-TC-A-TAATAATCCCC
** * * * * * * *
735084 ATTCTCTTT-GTGATTAGGCACTATAAACACATTCTCCTT-ATTAGGATAAATGATATTGATGAT
1 ATTCT-TTTCAAGATTAGGCACCATAAACATAGTCT-TTTCATTAGGATACACGATATTGATGCT
** * * *** * * * *
735147 TTATTTTTACAAGGAATCTTTTCTTTGCG--C-TATTTTCATTAAAATCAAAGCTTATC-CCATA
64 TTGGTTTCACAAGAAAAGGTTT-TTTCCGACCGT-TTTTGA-TAAAATCAAAGTTTGTCTCC-TA
** * * ** * *
735208 AATAAGATGAGCATTGATTCTCATAATAGTCTCC
125 AATAAGACAAACATTAATAGTCATAATAATCCCC
* * ** * * * *
735242 ATTCTTTTCAAGATT-GAGAACCA-ACAACATATTCCCTTCATTTGGATACAAGAGATTGTTGCT
1 ATTCTTTTCAAGATTAG-GCACCATA-AACATAGTCTTTTCATTAGGATACACGATATTGATGCT
*
735305 TTGGTGTCACAAGAAAAGGTTCTATTTCC-ACCGTTTTTGATAAAATCAAAGTTTGTCTCCTAAA
64 TTGGTTTCACAAGAAAAGGTT-T-TTTCCGACCGTTTTTGATAAAATCAAAGTTTGTCTCCTAAA
*
735369 TAAGACAAAC-TTGAATAGTCATACTAATCCCC
127 TAAGACAAACATT-AATAGTCATAATAATCCCC
* * *
735401 ATTCTTTTCAAGATTAGGCACCATCAACATAGTCTTTTCATAAGGATACACGATATTGATGCATT
1 ATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTTTCATTAGGATACACGATATTGATGCTTT
*
735466 GGTTTCGCAAGAAA
66 GGTTTCACAAGAAA
735480 GGCTTTCTCC
Statistics
Matches: 733, Mismatches: 234, Indels: 124
0.67 0.21 0.11
Matches are distributed among these distances:
154 1 0.00
155 9 0.01
156 14 0.02
157 27 0.04
158 354 0.48
159 297 0.41
160 23 0.03
161 8 0.01
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (158 bp):
ATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTTTCATTAGGATACACGATATTGATGCTTT
GGTTTCACAAGAAAAGGTTTTTTCCGACCGTTTTTGATAAAATCAAAGTTTGTCTCCTAAATAAG
ACAAACATTAATAGTCATAATAATCCCC
Found at i:735795 original size:52 final size:52
Alignment explanation
Indices: 735717--735820 Score: 208
Period size: 52 Copynumber: 2.0 Consensus size: 52
735707 TTCAGGATTA
735717 AGAACCAAAAACACATTCCCTTCATTTGGATAAATGACATTGATGCTTTGGT
1 AGAACCAAAAACACATTCCCTTCATTTGGATAAATGACATTGATGCTTTGGT
735769 AGAACCAAAAACACATTCCCTTCATTTGGATAAATGACATTGATGCTTTGGT
1 AGAACCAAAAACACATTCCCTTCATTTGGATAAATGACATTGATGCTTTGGT
735821 GTCACAAAAA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (52 bp):
AGAACCAAAAACACATTCCCTTCATTTGGATAAATGACATTGATGCTTTGGT
Found at i:736986 original size:29 final size:29
Alignment explanation
Indices: 736942--737023 Score: 98
Period size: 27 Copynumber: 2.9 Consensus size: 29
736932 TTTAAATAAG
736942 ACAAAAAGGCATTTTCCCACCAATTTCCC
1 ACAAAAAGGCATTTTCCCACCAATTTCCC
* * *
736971 ACCAAAAGGCATTTTCCTTA--AA-ATCCC
1 ACAAAAAGGCATTTTCC-CACCAATTTCCC
*
736998 TCAAAAAGGCATTTTCCCACCAATTT
1 ACAAAAAGGCATTTTCCCACCAATTT
737024 TTGTAAAGTC
Statistics
Matches: 42, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
26 1 0.02
27 19 0.45
28 4 0.10
29 17 0.40
30 1 0.02
ACGTcount: A:0.35, C:0.30, G:0.07, T:0.27
Consensus pattern (29 bp):
ACAAAAAGGCATTTTCCCACCAATTTCCC
Found at i:737971 original size:475 final size:475
Alignment explanation
Indices: 737081--737992 Score: 1006
Period size: 475 Copynumber: 1.9 Consensus size: 475
737071 TAGGTACTAT
* * * *
737081 AACACATTCTCCTTATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAGTTTTTTCTTT
1 AACACATTCTCCTCATTAGGATAAATGATACTGATGATTTTCTTTTGCATAGAAATTTTTTCTTT
* * * * *
737146 GCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATAATTTCTCGTAACAGT
66 GCCATAGTTACCTTAAAATCAAAATTCATCCCATAAATATGACAAGCATAATTTCTCGTAACAGC
* ** * *
737211 CTCCATTCTTTTCAAGATTAGGAACCAATAACACTTTCCCTTCATTAGGATTCATGACATTGATG
131 CTCCATTCTTTTCAAGATTAGGAACCAATAACACTTTCCCTTCAGTAAAATACATGACATTAATG
* * * * ** *
737276 CTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTGTGATAGGATCAAAGTTTGTCTTTTAA
196 CTTTGGTGTCGCAAGAAAAGATTTTCTATCCACCATTTGTGATAGAATCAAAGTTCGTCCCTCAA
* * ** *
737341 ATAAGACAAACATGAAAAGTCATACTAATCCCTATTTTTTTAGGATTAGGCACCGTAAACATAGT
261 ATAAGACAAACATGAAAAGTCATACTAATCCCTATCTATACAGGATTAGGCACCATAAACATAGT
* * ** * * *
737406 ATTCTTATTAGGATGGACGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATT
326 ATTCTCACTAGGATACACGATAATGATGCTTTGCTTCTGCAAGAAAGGCTTTCTTCCCACCAATT
* * * * *
737471 TTTGTAAAGTCTAAGTTCATCCCTCAAAAGAGATAAACATGGATTCTAGTGATGATCTACATTCA
391 TTTGTAAAATCAAAGTTCATCCCTCAAAAGAGAGAAAAATAGATTCTAGTGATGATCTACATTCA
737536 TTCTGTGATTAGGCACTAGG
456 TTCTGTGATTAGGCACTAGG
*
737556 AACACATTCTCCTCATTAGGATAAATGATACTGATGATTTTCTTTTGCGTAGAAATCTTTTT-TT
1 AACACATTCTCCTCATTAGGATAAATGATACTGATGATTTTCTTTTGCATAGAAAT-TTTTTCTT
* * * * *
737620 TTCCATAGTTACCTTAAAATCAAAGTTCATCCCATATAT-TAGATAAGCATCGA-TTCTCGTAAC
65 TGCCATAGTTACCTTAAAATCAAAATTCATCCCATAAATAT-GACAAGCAT-AATTTCTCGTAAC
* *
737683 AGCCTCTATTCTTTTCCAGATT-GTGAACC-ATAAACACTTTCTCC-TCAGTAAAATACATGACA
128 AGCCTCCATTCTTTTCAAGATTAG-GAACCAAT-AACACTTTC-CCTTCAGTAAAATACATGACA
* *
737745 TTAATGCTTTGGTGTCGCAAGAATAGATTTTCTATCCACCATTTTTGATAGAATCAAAGTTCGTC
190 TTAATGCTTTGGTGTCGCAAGAAAAGATTTTCTATCCACCATTTGTGATAGAATCAAAGTTCGTC
* **** * * *
737810 CCTCAAA-AGAGAC-AACCTCGGGTTGTCATAAC-CATCTCC-ATCTATACATGATTAGGCAGCA
255 CCTCAAATA-AGACAAACAT-GAAAAGTCAT-ACTAATC-CCTATCTATACAGGATTAGGCACCA
* * * * * *
737871 TAAATAT-GTTCTTCTCACTATGATACATGATAATGATGCTTTGACTTCT-CAAGAAATG-TTTT
316 TAAACATAG-TATTCTCACTAGGATACACGATAATGATGCTTTG-CTTCTGCAAGAAAGGCTTTC
** * *
737933 TTCTTACCCATTTTCCT-TAAAATCAAAGTTCATCCCTCAAATGAGAGAAAAATAGATTCT
379 TTCCCACCAATTTT--TGTAAAATCAAAGTTCATCCCTCAAAAGAGAGAAAAATAGATTCT
737993 TGTAATTATC
Statistics
Matches: 357, Mismatches: 66, Indels: 28
0.79 0.15 0.06
Matches are distributed among these distances:
474 24 0.07
475 317 0.89
476 16 0.04
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (475 bp):
AACACATTCTCCTCATTAGGATAAATGATACTGATGATTTTCTTTTGCATAGAAATTTTTTCTTT
GCCATAGTTACCTTAAAATCAAAATTCATCCCATAAATATGACAAGCATAATTTCTCGTAACAGC
CTCCATTCTTTTCAAGATTAGGAACCAATAACACTTTCCCTTCAGTAAAATACATGACATTAATG
CTTTGGTGTCGCAAGAAAAGATTTTCTATCCACCATTTGTGATAGAATCAAAGTTCGTCCCTCAA
ATAAGACAAACATGAAAAGTCATACTAATCCCTATCTATACAGGATTAGGCACCATAAACATAGT
ATTCTCACTAGGATACACGATAATGATGCTTTGCTTCTGCAAGAAAGGCTTTCTTCCCACCAATT
TTTGTAAAATCAAAGTTCATCCCTCAAAAGAGAGAAAAATAGATTCTAGTGATGATCTACATTCA
TTCTGTGATTAGGCACTAGG
Found at i:738925 original size:782 final size:776
Alignment explanation
Indices: 737135--738925 Score: 2597
Period size: 782 Copynumber: 2.3 Consensus size: 776
737125 TTGCATGGAA
* * * ** *
737135 GTTTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAAT-ATGACAAGCATAATT
1 GTTTTTTC-TTACCC-ATTTTCCTTAAAATCAAAGTTCATCCCTCAAATGA-GACAAAAATAAAT
* * * * * ** *
737199 TCTCGTAA-CAGTCTCCATTCTTTTCAAGATTAGGAACCAATAACACT-TTCCCTTCATTAGGAT
63 TCTTGTAATTA-TCTCCTTTCATTTCAAGATTGGGAACCAA-AATGCTCTT---TTCTTTAGGAT
* * * * ** * **
737262 TCATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTGTGATAGGATCAA
123 ACATGACATTGATCCTTTGGTGCCACAAGAAAACCTTTTCTTTCCACCATTTGTGACAAAATCAA
** * *
737327 AGTTTGTCTTTTAAATAAGACAAACATGAAAAGTCATACTAATCCCTATTTTTTTAGGATTAGGC
188 AGTTTGTCCCTCAAAT-----AAACAT-----G--ATACTAATCCCCATTTTTTTAGGATTAGGC
*
737392 ACCGTAAACATAGTATTCTTATTAGGATGGACGATATTGATGCTTTGGTTTTGCAAGAAAGGCTT
241 ACCATAAACATAGTATTCTTATTAGGATGGACGATATTGATGCTTTGGTTTTGCAAGAAAGGCTT
*
737457 TCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATCCCTCAAAAGAGATAAACATGGATTCTAGTG
306 TCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATCCCTCAAAAGAGACAAACATGGATTCTAGTG
737522 ATGATCTACATTCATTCTGTGATTAGGCACTAGGAACACATTCTCCTCATTAGGATAAATGATAC
371 ATGATCTACATTCATTCTGTGATTAGGCACTAGGAACACATTCTCCTCATTAGGATAAATGATAC
*
737587 TGATGATTTTCTTTTGCGTAGAAATCTTTTTTTTTCCATAGTTACCTTAAAATCAAAGTTCATCC
436 TGATGATTTTCTTTTGCGTAGAAATCTTTTCTTTTCCATAGTTACCTTAAAATCAAAGTTCATCC
* *
737652 CATATATTAGATAAGCATCGATTCTCGTAACAGCCTCTATTCTTTTCCAGATTGTGAACCATAAA
501 CATATATTAGATAAGCATCGATTCTCGTAACAGCCTCTATTCTTTTCCAGATTGGGAACCAAAAA
737717 CACTTTCTCCTCAGTAAAATACATGACATTAATGCTTTGGTGTCGCAAGAATAGATTTTCTATCC
566 CACTTTCTCCTCAGTAAAATACATGACATTAATGCTTTGGTGTCGCAAGAATAGATTTTCTATCC
*
737782 ACCATTTTTGATAGAATCAAAGTTCGTCCCTCAAAAGAGACAACCTCGGGTTGTCATAACCATCT
631 ACCATTTTTGATAAAATCAAAGTTCGTCCCTCAAAAGAGACAACCTCGGGTTGTCATAACCATCT
* *
737847 CCATCTATACATGATTAGGCAGCATAAATATGTTCTTCTCACTATGATACATGATAATGATGCTT
696 CCATCTACACATGATTAGGCAGCATAAATATGTTCTTCTCACTATGATACACGATAATGATGCTT
737912 TGACTTCTCAAGAAAT
761 TGACTTCTCAAGAAAT
* *
737928 GTTTTTTCTTACCCATTTTCCTTAAAATCAAAGTTCATCCCTCAAATGAGAGAAAAATAGATTCT
1 GTTTTTTCTTACCCATTTTCCTTAAAATCAAAGTTCATCCCTCAAATGAGACAAAAATAAATTCT
*
737993 TGTAATTATCTCCTTTCTTTTCAAGATTGGGAACCAAAATGCTCTTTTCTTTAGGATACATGACA
66 TGTAATTATCTCCTTTCATTTCAAGATTGGGAACCAAAATGCTCTTTTCTTTAGGATACATGACA
* * ** * ** *
738058 TTGATCCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTGTGATAGGATCAATGTTTGTC
131 TTGATCCTTTGGTGCCACAAGAAAACCTTTTCTTTCCACCATTTGTGACAAAATCAAAGTTTGTC
** *
738123 TTTTAAATAAGACAAACATGATACTAATCCCCATTATTTTTAGGATTAGGCACCATAAACATAGT
196 CCTCAAAT-----AAACATGATACTAATCCCCATT-TTTTTAGGATTAGGCACCATAAACATAGT
738188 ATTCTTATTAGGATGGACGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATT
255 ATTCTTATTAGGATGGACGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATT
* *
738253 TTTGTAAAGTCTAAGTTCATGCCTCAAAAGAGACAAACATGGATTCTAGTGATGATCTTCATTCA
320 TTTGTAAAGTCTAAGTTCATCCCTCAAAAGAGACAAACATGGATTCTAGTGATGATCTACATTCA
*
738318 TTTTGTGATTAGGCACTAGGAACACATTCTCCTCATTAGGATAAATGATACTGATGATTTTCTTT
385 TTCTGTGATTAGGCACTAGGAACACATTCTCCTCATTAGGATAAATGATACTGATGATTTTCTTT
* *
738383 TGTGTGGAAATCTTTTCTTTTCCATAGTTACCTTAAAATCAAAGTTCATCCCATATATTAGATAA
450 TGCGTAGAAATCTTTTCTTTTCCATAGTTACCTTAAAATCAAAGTTCATCCCATATATTAGATAA
** *
738448 GCATCGATTCTCAG-AACAGTTTCTATTCTTTTCCAGATTGGGAACCAAAAACACTTTCTCCTTA
515 GCATCGATTCTC-GTAACAGCCTCTATTCTTTTCCAGATTGGGAACCAAAAACACTTTCTCCTCA
* * * * *
738512 GTAAGATACATGACATTGATGCTTTGGTGTCGCAAGACTAGCTTTTCTTTCCACCATTTTTGATA
579 GTAAAATACATGACATTAATGCTTTGGTGTCGCAAGAATAGATTTTCTATCCACCATTTTTGATA
738577 AAATCAAAGTTCGTCCCTCAAAAGAGACAACCTCGGGTTGTCATAACCATCTCCATCTACACATG
644 AAATCAAAGTTCGTCCCTCAAAAGAGACAACCTCGGGTTGTCATAACCATCTCCATCTACACATG
738642 ATTAGGCAGCATAAATATGTTCTTCTCACTATGATACACGATAATGATGCTTTGACTTCTCAAGA
709 ATTAGGCAGCATAAATATGTTCTTCTCACTATGATACACGATAATGATGCTTTGACTTCTCAAGA
738707 AAT
774 AAT
738710 GTTTTTT-TTACCCATTTTCCTTAAAATCAAAGTTCATCCCTCAAATGAGACAAAAATAAATTCT
1 GTTTTTTCTTACCCATTTTCCTTAAAATCAAAGTTCATCCCTCAAATGAGACAAAAATAAATTCT
*
738774 TGTAATTATCT-CTTTCAATTTCGAGATTGGGAACCAAAAAAAAAAATGCTCTTTTCTTTAGGAT
66 TGTAATTATCTCCTTTC-ATTTCAAGATTGGGAACC-------AAAATGCTCTTTTCTTTAGGAT
* ** * * *
738838 ACATGACATTGATCCTTTGGTGCCATAAGGGAACCTTTTCTTTCCGCCATTTTTTACAAAATCAA
123 ACATGACATTGATCCTTTGGTGCCACAAGAAAACCTTTTCTTTCCACCATTTGTGACAAAATCAA
738903 AGTTTGTCCCTCAAAT-AACATGA
188 AGTTTGTCCCTCAAATAAACATGA
738926 ATTTGGATTG
Statistics
Matches: 924, Mismatches: 61, Indels: 37
0.90 0.06 0.04
Matches are distributed among these distances:
780 5 0.01
781 96 0.10
782 542 0.59
783 2 0.00
788 185 0.20
790 4 0.00
791 75 0.08
792 7 0.01
793 8 0.01
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (776 bp):
GTTTTTTCTTACCCATTTTCCTTAAAATCAAAGTTCATCCCTCAAATGAGACAAAAATAAATTCT
TGTAATTATCTCCTTTCATTTCAAGATTGGGAACCAAAATGCTCTTTTCTTTAGGATACATGACA
TTGATCCTTTGGTGCCACAAGAAAACCTTTTCTTTCCACCATTTGTGACAAAATCAAAGTTTGTC
CCTCAAATAAACATGATACTAATCCCCATTTTTTTAGGATTAGGCACCATAAACATAGTATTCTT
ATTAGGATGGACGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTA
AAGTCTAAGTTCATCCCTCAAAAGAGACAAACATGGATTCTAGTGATGATCTACATTCATTCTGT
GATTAGGCACTAGGAACACATTCTCCTCATTAGGATAAATGATACTGATGATTTTCTTTTGCGTA
GAAATCTTTTCTTTTCCATAGTTACCTTAAAATCAAAGTTCATCCCATATATTAGATAAGCATCG
ATTCTCGTAACAGCCTCTATTCTTTTCCAGATTGGGAACCAAAAACACTTTCTCCTCAGTAAAAT
ACATGACATTAATGCTTTGGTGTCGCAAGAATAGATTTTCTATCCACCATTTTTGATAAAATCAA
AGTTCGTCCCTCAAAAGAGACAACCTCGGGTTGTCATAACCATCTCCATCTACACATGATTAGGC
AGCATAAATATGTTCTTCTCACTATGATACACGATAATGATGCTTTGACTTCTCAAGAAAT
Found at i:742582 original size:475 final size:472
Alignment explanation
Indices: 741845--743103 Score: 1397
Period size: 475 Copynumber: 2.7 Consensus size: 472
741835 CAAATTGCCG
* * ** * * * *
741845 CAAACATTGATTCTAGCAATGATCTTCATT--TACTATGCTTA-GCTACCATAAACACATTCAGC
1 CAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGC-ACTATAAACACATTCACC
* * * * * *
741907 TCGTTAGGATACATGATACTGATGATTTTCCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTT
65 TCATTAGGATAAATGATATTGATGATTTT-CTTTTGTATGGAAATCTTTTCTTTGCCCTATTTTC
* * * *
741972 CTTAAAATCTAAATTCATCCCATAACTATGACAAGCATCGATTCTCGTAGAAGTCCCCATTCTTT
129 CTTAAAATCAAAATTCAT-CCATAAATATGACAAGCATCGATTCTCGTA-AAGTTCCAATT-TTT
** * * * * *
742037 TCGTGATCAGGAACCAAGAACACATTCCCTTCATTAGGATACAAGACATTGACGCTTTAGTGTTG
191 TCAAGATTAGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCG
* * * *
742102 CAAGAAAAGTTTTTCTTTTCCCCGTTTTTAATAGAACCAAA-TTTGT-TCCTTAAATAAGACACA
256 CAAGAAAAGGTTTTCTTTTCACTGTTTTTAATAGAACCAAAGTTTGTCT-CTTAAATAAGACAAA
* * *
742165 CATAAATAGTTATA-CTAATCCCTATTATTTTCAGGATTAG-GCACCGTAAACATAGTCTTCGCA
320 CATAAATAGTCAAAGCTAA-CCCTATTATTTTCAGGATT-GCGCACCATAAACATAGTCTTCGCA
* * * **
742228 TAAGGATACACGATATTGATGGTTCGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAA
383 TAA-GATAAACAATATTGATGCTTCGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAA
* *
742293 AGTCCAAGTTCGTGCCTGGAA-TGAGA
447 AGTCCAAGTTCGTACCT-CAAGTGAGA
* *
742319 CAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCATTGTAAACACATTCTA-C
1 CAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC-ACC
* * *
742383 TCATTAGGATAAATGATATTGAAGATTTTCTTTTGTATGAAAATCTTTTTTTTGCCCTATTTTCC
65 TCATTAGGATAAATGATATTGATGATTTTCTTTTGTATGGAAATCTTTTCTTTGCCCTATTTTCC
* * * * * *
742448 TTAAAATCAAAATTTATCAATTAAATATGACAAGCATCGATTGTTGTAATGGTATCTAATTTTTT
130 TTAAAATCAAAATTCATCCA-TAAATATGACAAGCATCGATTCTCGTAA-AGT-TCCAATTTTTT
* * *
742513 CAAGATTAGGAACCTAGAACACAATCCCTTCATTAGGATACATGACATTGATGCTTTGGTATCGC
192 CAAGATTAGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGC
* * * * *
742578 AAGAAAAGGTTTTCTTTTGACTATTTGTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
257 AAGAAAAGGTTTTCTTTTCACTGTTTTTAATAGAACCAAAGTTTGTCTCTTAAATAAGACAAACA
* * * * * *
742643 TAAATAGTCAAAGTTAACCCTATTCTTTTTAGGATTGCGCACCATAAACATAGTTTTCTCATTAG
322 TAAATAGTCAAAGCTAACCCTATTATTTTCAGGATTGCGCACCATAAACATAGTCTTCGCATAAG
* * * * * *
742708 ATAAATAATATTGATGCTTTGGTTTCACCAGAAAGGCTTTTTTCTCACCAATTTTTGTAAAGTCT
387 ATAAACAATATTGATGCTTCGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCC
742773 AAGTTCGTACCTCAAGTGAGA
452 AAGTTCGTACCTCAAGTGAGA
* * *
742794 TAAACATGGATTCTAGTAATGATCTTCGTTCATTTTGTGATTAGGCACTAAAAACACATTCACCT
1 CAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCACCT
* *
742859 TATTAGGATAAATGATATTGATGATTTTCTTTTGCT-TGGAAATCTTTTCTTTACCCTATTTTCC
66 CATTAGGATAAATGATATTGATGATTTTCTTTTG-TATGGAAATCTTTTCTTTGCCCTATTTTCC
* * * * * * *
742923 TTAAAATCAAGATTGATCCCCTAAA-ATAGATAAGCATCAATTCTCGTAACAGTCTCCACTCTTT
130 TTAAAATCAAAATTCAT-CCATAAATAT-GACAAGCATCGATTCTCGTAA-AGT-TCCAATTTTT
* * * * * * * * *
742987 TCAAGATTAGAAACCAAAAACACATTCTCTTTAGTAGGATACATGACAATGATGCTCTGGGGTCA
191 TCAAGATTAGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCG
* * * * * *
743052 CAAGGAAAGGTTTTCTTTTCGCTGTTTTTGATAAAATCAACGTTTGTCTCTT
256 CAAGAAAAGGTTTTCTTTTCACTGTTTTTAATAGAACCAAAGTTTGTCTCTT
743104 TTTTTTTAGG
Statistics
Matches: 657, Mismatches: 112, Indels: 31
0.82 0.14 0.04
Matches are distributed among these distances:
474 36 0.05
475 493 0.75
476 121 0.18
477 7 0.01
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (472 bp):
CAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCACCT
CATTAGGATAAATGATATTGATGATTTTCTTTTGTATGGAAATCTTTTCTTTGCCCTATTTTCCT
TAAAATCAAAATTCATCCATAAATATGACAAGCATCGATTCTCGTAAAGTTCCAATTTTTTCAAG
ATTAGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
AAAGGTTTTCTTTTCACTGTTTTTAATAGAACCAAAGTTTGTCTCTTAAATAAGACAAACATAAA
TAGTCAAAGCTAACCCTATTATTTTCAGGATTGCGCACCATAAACATAGTCTTCGCATAAGATAA
ACAATATTGATGCTTCGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCCAAGT
TCGTACCTCAAGTGAGA
Found at i:744143 original size:476 final size:473
Alignment explanation
Indices: 743106--744493 Score: 1752
Period size: 476 Copynumber: 2.9 Consensus size: 473
743096 TGTCTCTTTT
* ** * * * *
743106 TTTTTAGGACTAAACTCCATAAACAGAGTCTTCTTATAAGGATACACATTATTGGCACTTTGGTT
1 TTTTTAGGATTAGGCTCCAAAAACATAGTCTTCTCAAAAGGATAC-CATTATTGGCACTTTGGTT
* ** *
743171 TCGCAAGAAAGGTGCTCTTCCTGCCAGTTTTTGTAAAGTCTATGTTTGCGCCTCAAGTGGGACAA
65 TCGCAAGAAAGGTGTTCTTCCCACCAGTTTTTGTAAAGTCTATGTTTGTGCCTCAAGTGGGACAA
* * * *
743236 ACATTGATTCTAGCAATTATCTTCATTCATTTTCTGATTAGGCACTATAAACAC-TTTTGCCTTA
130 ACATGGATTCTAGTAATGATCTTCATTCATTTTCTGATTAGGCACTATAAACACATTCT-CCTTA
* * * * *
743300 TTAGGACATATGATACTGATGATTTTGTTTTGCATGAAAATCTTTT-TTTCCCTA-TTTTCTTTA
194 TTAGGATAAATGATACTGATGATTTTCTTTTGCATGGAAATCTTTTCTTGCCCTATTTTTC-TTA
* * *
743363 AAATCAAAGTTGGTCCCATAAATAAGACAAGCATCGATTCTCATAATAGTCTCCATTATTTTCAA
258 AAATCAAAGTTGATCCCATAAATAAGACAAGCATCGATTCTCATAATAGTCTCCATTCTTTTTAA
* * * * *
743428 GATT-GAGAACCAACAACACATTCCCTTTATTTGGATACATCAGATTGATGCTTTGGTGTCGCAA
323 GATTGGA-AACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGG-GTCGCAA
* *
743492 AAAAAGGTTTT-TTTCCACCGTTTTTTATAGAATCAAAATTTGTCTCTCAAATAAGACAAACATT
386 GAAAAGGTTTTCTTTCCACCGTTTTTTATAGAATCAAAGTTTGTCTCTCAAATAAGACAAACATT
* *
743556 GATAGTCATACTTATCCCCATTC
451 AATAGTCATACTAATCCCCATTC
** * * ***
743579 TTTTTAGGATTAGG-TACCACAAAA-ATAGTCTTCTCACTAGGATAGACGTTATTGATGCTTTGG
1 TTTTTAGGATTAGGCT-CCA-AAAACATAGTCTTCTCAAAAGGATA-CCATTATTGGCACTTTGG
** * * * * **
743642 TTTCGCAAGAAA-GACTTCTTTCCCACCAATTTTTGTAAAGTCTAAGTTTATGCCTCAAATGAAA
63 TTTCGCAAGAAAGGTGTTC-TTCCCACCAGTTTTTGTAAAGTCTATGTTTGTGCCTCAAGTGGGA
** * *
743706 CAAACATGGATTCTAGTAATGATCTTCATTCATTTTGGGATTAGTCACTACAAACACATTCTCCT
127 CAAACATGGATTCTAGTAATGATCTTCATTCATTTTCTGATTAGGCACTATAAACACATTCTCCT
* *
743771 TATTAGGATAAATGATATTGATGATTTTCTTTTGCTTGGAAATCTTTTCTTAGCCCTATTTTTCT
192 TATTAGGATAAATGATACTGATGATTTTCTTTTGCATGGAAATCTTTTCTT-GCCCTATTTTTCT
* ** * * *
743836 TAAAATCAAAATTGATCCTTTAAATAAGACAAGCATTGATTCTCGTAATAGTCTCCACTCTTTTT
256 TAAAATCAAAGTTGATCCCATAAATAAGACAAGCATCGATTCTCATAATAGTCTCCATTCTTTTT
*
743901 AAGATTGGAAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTAGGGTCACA
321 AAGATTGGAAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTT-GGGTCGCA
* *
743966 AGAAAAGGTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTC-CTAAATAAGACAAACA
385 AGAAAAGGTTTTCTTTCCACCGTTTTTTATAGAATCAAAGTTTGTCTCTC-AAATAAGACAAACA
*
744030 TTAATAGTCATACTAATGCCCATTC
449 TTAATAGTCATACTAATCCCCATTC
*
744055 TTTTTAGGATTAGGCTCCAAAAACATAGTCTTCTCAAAAGGATACCTTATATTGGCACTTTGGTT
1 TTTTTAGGATTAGGCTCCAAAAACATAGTCTTCTCAAAAGGATACCAT-TATTGGCACTTTGGTT
* *
744120 TTGTC-AGAAAGGTGTTCTTCCCACCAGTTTTTGTAAAGTCTATGTTTGTGCCTTAAGTGGGACA
65 TCG-CAAGAAAGGTGTTCTTCCCACCAGTTTTTGTAAAGTCTATGTTTGTGCCTCAAGTGGGACA
* ** *
744184 AACATGGTTTCTAGTAATGATCTTCATTCATTTTCTGATTAGGCACTATAAACACATTGGCCTCA
129 AACATGGATTCTAGTAATGATCTTCATTCATTTTCTGATTAGGCACTATAAACACATTCTCCTTA
* * * * *
744249 TTAGTATAAATGACACTAATGATTTTCTTTAGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTA
194 TTAGGATAAATGATACTGATGATTTTCTTTTGCATGGAAATCTTTTC-TTGCCCTATTTTTCTTA
* * * * * *
744314 AAATCAATGTTCATCCCATAAATAAGACAAGCATCAATTCTCATAACAGTCTCTATTCTTTTTCA
258 AAATCAAAGTTGATCCCATAAATAAGACAAGCATCGATTCTCATAATAGTCTCCATTCTTTTTAA
* * * * *
744379 GATTGGGAACGAAAAACACTTTCTCTTCATTAGGATACACGACATTGATGCTTTGGGTCGCAAGA
323 GATTGGAAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGTCGCAAGA
* * * * *
744444 CAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTATCCCTCAAA
388 AAAGGTTTTCTTTCCACCGTTTTTTATAGAATCAAAGTTTGTCTCTCAAA
744494 GGAGACAACC
Statistics
Matches: 777, Mismatches: 119, Indels: 36
0.83 0.13 0.04
Matches are distributed among these distances:
472 4 0.01
473 186 0.24
474 8 0.01
475 184 0.24
476 387 0.50
477 8 0.01
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (473 bp):
TTTTTAGGATTAGGCTCCAAAAACATAGTCTTCTCAAAAGGATACCATTATTGGCACTTTGGTTT
CGCAAGAAAGGTGTTCTTCCCACCAGTTTTTGTAAAGTCTATGTTTGTGCCTCAAGTGGGACAAA
CATGGATTCTAGTAATGATCTTCATTCATTTTCTGATTAGGCACTATAAACACATTCTCCTTATT
AGGATAAATGATACTGATGATTTTCTTTTGCATGGAAATCTTTTCTTGCCCTATTTTTCTTAAAA
TCAAAGTTGATCCCATAAATAAGACAAGCATCGATTCTCATAATAGTCTCCATTCTTTTTAAGAT
TGGAAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGTCGCAAGAAAA
GGTTTTCTTTCCACCGTTTTTTATAGAATCAAAGTTTGTCTCTCAAATAAGACAAACATTAATAG
TCATACTAATCCCCATTC
Found at i:745818 original size:158 final size:157
Alignment explanation
Indices: 745656--746307 Score: 409
Period size: 158 Copynumber: 4.1 Consensus size: 157
745646 TCTTCATCGA
* * *
745656 AGGATACATGATACTGACGCTTTGGTTTCGTAAGAAAGGCTTTCTTT-CCACCAATTTTTGTAAA
1 AGGATAAATGATACTGATGCTTTGGTTTCGTAAGAAAGACTTTCTTTCCCACCAATTTTTGTAAA
** * **
745720 GTCTAAGCTCGTGC-CTGAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTG
66 -TCTAAATTCGT-CACTTAAATGAGACAAACATGGATTCTA-TAATGATCTTCATTCATTTTAAG
* *
745784 ATTAGGCACTGTAAACACATTCTCCTCGTT
128 ATTAGGCACTATAAACACATTCTCCTCATT
* * * * ** * * * ** *
745814 AGGATAAATGATATTAAAGATTTTCTTTTGTATGAAA-ATCTTTTTTTGGC-CCTATTTTCCT-T
1 AGGATAAATGATACTGATGCTTTGGTTTCGTAAGAAAGA-CTTTCTTTCCCACCAATTTT--TGT
** * * * *
745876 GAAATCTAAATTTATCAATTAAAT-ATGACAAACATCGATTCTCATAA-CAGTC-TCTACTC-TT
63 -AAATCTAAATTCGTCACTTAAATGA-GACAAACATGGATTCT-ATAATGA-TCTTC-ATTCATT
* * *
745937 TTCAAGATTAGGAAC-AAAGAACACATTCT-TTCATT
123 TT-AAGATTAGGCACTATA-AACACATTCTCCTCATT
* * * * * * * * *
745972 AGGATACATAACACTGATGCTTTAGTGTCGTAAGAAAAGAATTTCTTT-TCACC-GTTTGTGATA
1 AGGATAAATGATACTGATGCTTTGGTTTCGTAAG-AAAGACTTTCTTTCCCACCAATTTTTG-TA
* * * * * * * * *
746035 GAATCAAAATTTGTCTCTTAAATAAGACAAACATGAATAGTC-ATACTTATCCTCATTCTTTTTA
64 -AATCTAAATTCGTCACTTAAATGAGACAAACATGGAT--TCTATAATGATCTTCATTCATTTTA
* * * *
746099 AGATTAGGCACCATAAACATAGTCTTCTCATT
126 AGATTAGGCACTATAAACACATTCTCCTCATT
* * * * *
746131 AGGATAGACGATATTGATGCTTTGGTTTCGCAAGAAAGACTTT-TTTCCCACTAATTTTTGTAAA
1 AGGATAAATGATACTGATGCTTTGGTTTCGTAAGAAAGACTTTCTTTCCCACCAATTTTTGTAAA
* * * **
746195 GTCTAAGTTCGTGC-CTCAATTGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTG
66 -TCTAAATTCGT-CACTTAAATGAGACAAACATGGATTCTA-TAATGATCTTCATTCATTTTAAG
* *
746259 ATTAGGCACTCTAAACACATTCTCCTTATT
128 ATTAGGCACTATAAACACATTCTCCTCATT
*
746289 AGGATAAATGATATTGATG
1 AGGATAAATGATACTGATG
746308 ATTTTTTTTT
Statistics
Matches: 368, Mismatches: 94, Indels: 64
0.70 0.18 0.12
Matches are distributed among these distances:
156 3 0.01
157 7 0.02
158 236 0.64
159 114 0.31
160 8 0.02
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.37
Consensus pattern (157 bp):
AGGATAAATGATACTGATGCTTTGGTTTCGTAAGAAAGACTTTCTTTCCCACCAATTTTTGTAAA
TCTAAATTCGTCACTTAAATGAGACAAACATGGATTCTATAATGATCTTCATTCATTTTAAGATT
AGGCACTATAAACACATTCTCCTCATT
Found at i:745992 original size:475 final size:471
Alignment explanation
Indices: 745090--746998 Score: 1970
Period size: 475 Copynumber: 4.0 Consensus size: 471
745080 TTTCATATAG
* * * * * * ** * * *
745090 TCAAAGCTTGTCTCTTAAAAAAGACAACCATGAATACTTATGTTGATCCACATTCTTTTCAGGAT
1 TCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCTTTTTAGGAT
* * * * * * **
745155 TACGCATCATAACCATAGTCTTTTCATTAGGATGCATGATATTGATGTTTTGACTTCGAAAGAAA
66 TAGGCACCATAAACATAGTCTTCTCA--AGGATACATGATATTGATGCTTTGGTTTCGAAAGAAA
* * * * * * *
745220 GGC-ATTTTCCCCCAATTTTTGTAAAGTCTAAGTTCATGCCACATATGTGACAAACATTGATTCT
129 GGCTTTTTTCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCT
** * * * * * *
745284 AGTAATGATCTTCATT--TACTATGCTTAGCCACTATAAATACATTTTCTTCATTAGGATAAATG
194 AGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATG
* * * * *
745347 ATATTGATA-ATTTTCTTTTCCA-CAGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCCAAAT
259 ATATT-AAAGATTTTCTTTTGCATGAGAAATCTTTT-TTTGCCCTATTTTCCTTAAAATCTAAAT
* * * * * * ** *
745410 TCATCC-TATAAATATGACAAGCATCAATTCTCATAGCAGTGTCCCATTATTTTTGAGATTGGGA
322 TTATCCAT-TAAATATGACAAGCATCGATTCTCATAACAGTCT-CCACTCTTTTCAAGATTAGGA
*
745474 ACCAAGAACACATTCCCTACATTAGGATACATGACATTGATGCTTTGGTACTGCAAGAAAAGTTT
385 ACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGT-CTGCAAGAAAAGTTT
* *
745539 TCCTTTCCACTGTTTTTAATACAA
449 T-CTTTCCACTGTTTTTGATAGAA
* * *
745563 TCAAAGTTTGTCTCTCAAATAAGACAAACATTAATAGTCATACTAATCCCCATTATTTTCAGGAT
1 TCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCTTTTTAGGAT
* * * *
745628 TAGGGACCATAAACATAGTCTTCATCGAAGGATACATGATACTGACGCTTTGGTTTCGTAAGAAA
66 TAGGCACCATAAACATAGTCTTC-TC-AAGGATACATGATATTGATGCTTTGGTTTCGAAAGAAA
* *
745693 GGCTTTCTTTCCACCAATTTTTGTAAAGTCTAAGCTCGTGCCTGAAATGAGACAAACATGGATTC
129 GGCTTT-TTTCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTC
* *
745758 TAGTAATGATCTTCATTCATTTTGTGATTAGGCACTGTAAACACATTCTCCTCGTTAGGATAAAT
193 TAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAT
* *
745823 GATATTAAAGATTTTCTTTTGTATGA-AAATCTTTTTTTGGCCCTATTTTCCTTGAAATCTAAAT
258 GATATTAAAGATTTTCTTTTGCATGAGAAATCTTTTTTT-GCCCTATTTTCCTTAAAATCTAAAT
* * *
745887 TTATCAATTAAATATGACAAACATCGATTCTCATAACAGTCTCTACTCTTTTCAAGATTAGGAAC
322 TTATCCATTAAATATGACAAGCATCGATTCTCATAACAGTCTCCACTCTTTTCAAGATTAGGAAC
* * * * * *
745952 AAAGAACACATT-CTTTCATTAGGATACATAACACTGATGCTTTAGTGTC-GTAAGAAAAGAATT
387 CAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTT-G-GTCTGCAAGAAAAG-TTT
* * *
746015 TCTTTTCACCGTTTGTGATAGAA
449 TCTTTCCACTGTTTTTGATAGAA
* * * * *
746038 TCAAAATTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTTATCCTCATTCTTTTTAAGAT
1 TCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCTTTTTAGGAT
* * *
746103 TAGGCACCATAAACATAGTCTTCTCATTAGGATAGACGATATTGATGCTTTGGTTTCGCAAGAAA
66 TAGGCACCATAAACATAGTCTTCTCA--AGGATACATGATATTGATGCTTTGGTTTCGAAAGAAA
* * *
746168 GACTTTTTTCCCACTAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGAGACAAACATGGATTC
129 GGCTTTTTT-CCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTC
* *
746233 TAGTAATGATCTTCATTCATTTTGTGATTAGGCACTCTAAACACATTCTCCTTATTAGGATAAAT
193 TAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAT
* * * * * *
746298 GATATTGATGATTTTTTTTTGC-TTAGAAATCTTTTCTTAGCCCTATTTTTCTTAAAAT-TAAAA
258 GATATTAAAGATTTTCTTTTGCATGAGAAATCTTTT-TTTGCCCTATTTTCCTTAAAATCT-AAA
* * * * * * * **
746361 TTGATCCCTTAAATATGATACGCATCTACTCTCGTAACAGTCTCCACTCTTTTCAAGATTAAAAA
321 TTTATCCATTAAATATGACAAGCATCGATTCTCATAACAGTCTCCACTCTTTTCAAGATTAGGAA
* * *
746426 CCCAA-AACACATTCCCTTCATTA-GATACATGGCATTAATGCTTTGGGGT-TACAAGAAAAGGT
386 -CCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTT--GGTCTGCAAGAAAA-GT
746488 TTTCTTTCCACTGTTTTTGATAGAA
447 TTTCTTTCCACTGTTTTTGATAGAA
* * * *
746513 TCAATGTTTGTCTCTTAAATAAGACAAATATTAATAGTCATACTAATCACCATTCTTTTTAGTAT
1 TCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCTTTTTAGGAT
* * * * *
746578 TATGCTCCATAAACATAGTCTTCTCATAAGGATACATGATATTGGTGCTTTTGTTTTGAAAGAAA
66 TAGGCACCATAAACATAGTCTTCTC--AAGGATACATGATATTGATGCTTTGGTTTCGAAAGAAA
* * * * * * * *
746643 TGTG-TTCTTCCCACTAGTTTTTGTAAAGTCTATGTTTGTGCATCAAGTTG-GACAAACATGGAT
129 -G-GCTTTTTTCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAA-ATGAGACAAACATGGAT
*
746706 TCTAGTAATGATCTTCATTCATTTTCTGATTAGGCACTATAAACACATTCGT-CTCATTAGGATA
191 TCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC-TCCTCATTAGGATA
* * * * * *
746770 AATGATACCCTGATGATTTTCTTTTGCATG-GAAATATTTTTTTTGCCTTATTTTCTTTAAAATC
255 AATGATA--TTAAAGATTTTCTTTTGCATGAGAAAT-CTTTTTTTGCCCTATTTTCCTTAAAATC
* * * * ** * * *
746834 -AAAGTTTATCCCA-TAAATAAGACAAGCATTGATTCTCGTAACAGTCCCCTTTTTTTTCCAGAG
317 TAAA-TTTAT-CCATTAAATATGACAAGCATCGATTCTCATAACAGTCTCCACTCTTTTCAAGAT
* * * * * * * *
746897 T-GGAAACCAAAAACACTTTCTCTTCGTTAGGATACATGATATGGATGCTTTGGTGTCGCAAGAC
380 TAGG-AACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTCT-GCAAGAA
**
746961 AAGCTTTTCTTTCCACCATTTTTGATAGAA
443 AAG-TTTTCTTTCCACTGTTTTTGATAGAA
*
746991 TCAGAGTT
1 TCAAAGTT
746999 CGTTCCTCAA
Statistics
Matches: 1200, Mismatches: 193, Indels: 81
0.81 0.13 0.05
Matches are distributed among these distances:
473 105 0.09
474 11 0.01
475 727 0.61
476 72 0.06
477 222 0.19
478 63 0.05
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (471 bp):
TCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCTTTTTAGGAT
TAGGCACCATAAACATAGTCTTCTCAAGGATACATGATATTGATGCTTTGGTTTCGAAAGAAAGG
CTTTTTTCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAG
TAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGAT
ATTAAAGATTTTCTTTTGCATGAGAAATCTTTTTTTGCCCTATTTTCCTTAAAATCTAAATTTAT
CCATTAAATATGACAAGCATCGATTCTCATAACAGTCTCCACTCTTTTCAAGATTAGGAACCAAG
AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTCTGCAAGAAAAGTTTTCTTTCC
ACTGTTTTTGATAGAA
Found at i:747243 original size:950 final size:953
Alignment explanation
Indices: 745152--747256 Score: 2088
Period size: 950 Copynumber: 2.2 Consensus size: 953
745142 TTCTTTTCAG
* * * * * * * * ** * *
745152 GATTACGCATCATAACCATAGTCTTTTCATTAGGATGCATGATATTGATGTTTTGACTTCGAAAG
1 GATTAGGCACCATAAACATAGTCTTCTCACTACGATACACGATATTGATACTTTGACTCCGCAAG
* * * * * * * * * * * *
745217 AAAGGC-ATTTTCCCCCAATTTTTGTAAAGTCTAAGTTCATGCCACATATGTGACAAACATTGAT
66 AAAGACTTTTTTCCCACTATTTTTGCAAAATCAAAGTTCATCCCTCAAATGAGACAAACATGGAT
* * * ** * * * *
745281 TCTAGTAATGATCTTCA-T--TTACTATGCTTAGCCACTATAAATACAT--TTTCTTCATTAGGA
131 TCTAGTAATGATCTTCATTCATTTCGA-GATTAGGAACTCTAAAAAAATGCTTTTTTCATTAGGA
* *
745341 TAAATGATATTGATAATTTTCTTTTCCACAGAAATCTTTTCTTTGCCCTATTTACCTTAAAATCC
195 TAAATGATATTGATAATTTTCTTTTCCACAGAAATCTTTTCTTAGCCCTATTTACCTTAAAATCA
* * * * ** *
745406 AAATTCATCCTATAAATATGACAAGCATCAATTCTCATAGCAGTGTCCCATTATTTTTGAGATTG
260 AAATTCATCCTATAAATATGACAAGCATCAACTCTCATAACAGTCTCCCACTATTTTCAAGATTA
** * * *
745471 GGAACCAAGAACACATTCCCTACATTAGGATACATGACATTGATGCTTTGGTACTGCAAGAAAAG
325 AAAACCAAGAACACATTCCCTACATTAGGATACATGACATTAATGCTTTGGGACTACAAGAAAAG
745536 TTTTCCTTTCCACTGTTTTTAATACAATCAAAGTTTGTCTCTCAAATAAGACAAACATTAATAGT
390 TTTTCCTTTCCACTGTTTTTAATACAATCAAAGTTTGTCTCTCAAATAAGACAAACATTAATAGT
* *
745601 CATACTAATCCCCATTATTTTCAGGATTAGGGACCATAAACATAGTCTTCATCGAAGGATACATG
455 CATACTAATCACCATTATTTTCAGGATTAGGCACCATAAACATAGTCTTCATCGAAGGATACATG
* *
745666 ATACTGACGCTTTGGTTTCGTAAGAAAGGCTTTCTTTCCACCAATTTTTGTAAAGTCTAAGCTCG
520 ATACTGACGCTTTGGTTTCGAAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGCTCG
* * * *
745731 TGCCTGAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTGT
585 TGCATCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTCTGATTAGGCACTAT
* * * *
745796 AAACACATTCTCCTCGTTAGGATAAATGATATTAAAGATTTTCTTTTGTATGAAAATCTTTTTTT
650 AAACACATTCTCCTCATTAGGATAAATGATACTAAAGATTTTCTTTTGCATGAAAATATTTTTTT
* *
745861 GGCCCTATTTTCCTTGAAATCTAAATTTATCAATTAAATATGACAAACATCGATTCTCATAACAG
715 GGCCCTATTTTCCTTAAAATCTAAATTTATCAATTAAATAAGACAAACATCGATTCTCATAACAG
* *
745926 TCTCTACTCTTTTCAAGATTAGGAACAAAGAACACATTCTTTCATTAGGATACATAACACTGATG
780 TCCCTACTCTTTTCAAGAGTAGGAACAAAGAACACATTCTTTCATTAGGATACATAACACTGATG
* * * * *
745991 CTTTAGTGTCGTAAGAAAAGAATTTCTTTTCACCGTTTGTGATAGAATCAAAATTTGTCTCTTAA
845 CTTTAGTGTCGCAAGAAAAGAATTTCTTTCCACCATTTGTGATAGAATCAAAATTCGTCTCTCAA
* * ****
746056 ATAAGACAAACATGAATAGTCATACTTATCCTCATTCTTTTTAA
910 AGAAGACAAACATGAATAGTCATACTCATCCTCATTCTACACAA
* * * * ** *
746100 GATTAGGCACCATAAACATAGTCTTCTCATTAGGATAGACGATATTGATGCTTTGGTTTCGCAAG
1 GATTAGGCACCATAAACATAGTCTTCTCACTACGATACACGATATTGATACTTTGACTCCGCAAG
* * * * * *
746165 AAAGACTTTTTTCCCACTAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGAGACAAACATGGA
66 AAAGACTTTTTTCCCACT-ATTTTTGCAAAATCAAAGTTCATCCCTCAAATGAGACAAACATGGA
* * * * * * **
746230 TTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTCTAAACACATTC-TCCTT-ATTAGGA
130 TTCTAGTAATGATCTTCATTCATTTCGAGATTAGGAACTCTAAAAAAATGCTTTTTTCATTAGGA
* * * ** ** *
746293 TAAATGATATTGATGATTTTTTTTTGCTTAGAAATCTTTTCTTAGCCCTATTTTTCTTAAAATTA
195 TAAATGATATTGATAATTTTCTTTTCCACAGAAATCTTTTCTTAGCCCTATTTACCTTAAAATCA
* * * * * *
746358 AAATTGATCCCT-TAAATATGATACGCATCTACTCTCGTAACAGTCT-CCACTCTTTTCAAGATT
260 AAATTCAT-CCTATAAATATGACAAGCATCAACTCTCATAACAGTCTCCCACTATTTTCAAGATT
* * **
746421 AAAAACCCAA-AACACATTCCCTTCATTA-GATACATGGCATTAATGCTTTGGGGTTACAAGAAA
324 AAAAA-CCAAGAACACATTCCCTACATTAGGATACATGACATTAATGCTTTGGGACTACAAGAAA
* * * * *
746484 AGGTTTT-CTTTCCACTGTTTTTGATAGAATCAATGTTTGTCTCTTAAATAAGACAAATATTAAT
388 A-GTTTTCCTTTCCACTGTTTTTAATACAATCAAAGTTTGTCTCTCAAATAAGACAAACATTAAT
* * * * * *
746548 AGTCATACTAATCACCATTCTTTTTAGTATTATGCTCCATAAACATAGTCTTC-TCATAAGGATA
452 AGTCATACTAATCACCATTATTTTCAGGATTAGGCACCATAAACATAGTCTTCATC-GAAGGATA
* ** * * * * * *
746612 CATGATATTGGTGCTTTTGTTTTGAAAGAAATG-TGTTCTTCCCACTAGTTTTTGTAAAGTCTAT
516 CATGATACTGACGCTTTGGTTTCGAAAGAAAGGCT-TTCTTCCCACCAATTTTTGTAAAGTCTAA
* * *
746676 GTTTGTGCATCAAGTTG-GACAAACATGGATTCTAGTAATGATCTTCATTCATTTTCTGATTAGG
580 GCTCGTGCATCAA-ATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTCTGATTAGG
* * *
746740 CACTATAAACACATTCGT-CTCATTAGGATAAATGATACCCTGATGATTTTCTTTTGCATGGAAA
644 CACTATAAACACATTC-TCCTCATTAGGATAAATGATA--CTAAAGATTTTCTTTTGCATGAAAA
* * * * * *
746804 TATTTTTTTTGCCTTATTTTCTTTAAAATC-AAAGTTTATCCCA-TAAATAAGACAAGCATTGAT
706 TATTTTTTTGGCCCTATTTTCCTTAAAATCTAAA-TTTAT-CAATTAAATAAGACAAACATCGAT
* * * * * *
746867 TCTCGTAACAGTCCCCT-TTTTTTTCCAGAGT-GGAAACCAAA-AACACTTTCTCTTCGTTAGGA
769 TCTCATAACAGT-CCCTACTCTTTTCAAGAGTAGG-AA-CAAAGAACACATTCT-TTCATTAGGA
* * * * ** *
746929 TACATGATA-TGGATGCTTTGGTGTCGCAAGACAAGCTTTTCTTTCCACCATTTTTGATAGAATC
830 TACATAACACT-GATGCTTTAGTGTCGCAAGAAAAGAATTTCTTTCCACCATTTGTGATAGAATC
* * * * ** * * *
746993 AGAGTTCGT-TCCTCAAAGAAGACAACCTTGGGTTGTCGTAAC-CAT-CTCCA-TCTACACAT
894 AAAATTCGTCT-CTCAAAGAAGACAAACATGAATAGTCAT-ACTCATCCT-CATTCTACACAA
* * * * *
747052 GATTAGGTAGCAT-AATAT-GTTTTTCTCACTACGATACACGATATTGATACTTTGACTCCTCAA
1 GATTAGGCACCATAAACATAG-TCTTCTCACTACGATACACGATATTGATACTTTGACTCCGCAA
* *
747115 GAAATA-TTATTTTAACCCA-T-TTTCTT-CAAAATCAAAGTTTATCCCTCAAATGAGACAAACA
65 GAAAGACTT-TTTT--CCCACTATTT-TTGCAAAATCAAAGTTCATCCCTCAAATGAGACAAACA
* * *
747176 TGGATTCTTGTAAT-AGTC-TCTATTCATTTCGAGATTCGGAAC-C-AAAAAAATGCTTTTTTCT
126 TGGATTCTAGTAATGA-TCTTC-ATTCATTTCGAGATTAGGAACTCTAAAAAAATGCTTTTTTCA
* *
747237 TTAGGATACATGACATTGAT
189 TTAGGATAAATGATATTGAT
747257 CCTTTGGTGC
Statistics
Matches: 946, Mismatches: 176, Indels: 68
0.79 0.15 0.06
Matches are distributed among these distances:
948 66 0.07
949 18 0.02
950 416 0.44
951 95 0.10
952 236 0.25
953 113 0.12
954 2 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (953 bp):
GATTAGGCACCATAAACATAGTCTTCTCACTACGATACACGATATTGATACTTTGACTCCGCAAG
AAAGACTTTTTTCCCACTATTTTTGCAAAATCAAAGTTCATCCCTCAAATGAGACAAACATGGAT
TCTAGTAATGATCTTCATTCATTTCGAGATTAGGAACTCTAAAAAAATGCTTTTTTCATTAGGAT
AAATGATATTGATAATTTTCTTTTCCACAGAAATCTTTTCTTAGCCCTATTTACCTTAAAATCAA
AATTCATCCTATAAATATGACAAGCATCAACTCTCATAACAGTCTCCCACTATTTTCAAGATTAA
AAACCAAGAACACATTCCCTACATTAGGATACATGACATTAATGCTTTGGGACTACAAGAAAAGT
TTTCCTTTCCACTGTTTTTAATACAATCAAAGTTTGTCTCTCAAATAAGACAAACATTAATAGTC
ATACTAATCACCATTATTTTCAGGATTAGGCACCATAAACATAGTCTTCATCGAAGGATACATGA
TACTGACGCTTTGGTTTCGAAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGCTCGT
GCATCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTCTGATTAGGCACTATA
AACACATTCTCCTCATTAGGATAAATGATACTAAAGATTTTCTTTTGCATGAAAATATTTTTTTG
GCCCTATTTTCCTTAAAATCTAAATTTATCAATTAAATAAGACAAACATCGATTCTCATAACAGT
CCCTACTCTTTTCAAGAGTAGGAACAAAGAACACATTCTTTCATTAGGATACATAACACTGATGC
TTTAGTGTCGCAAGAAAAGAATTTCTTTCCACCATTTGTGATAGAATCAAAATTCGTCTCTCAAA
GAAGACAAACATGAATAGTCATACTCATCCTCATTCTACACAA
Found at i:748433 original size:476 final size:476
Alignment explanation
Indices: 747588--749521 Score: 2403
Period size: 476 Copynumber: 4.1 Consensus size: 476
747578 GGACTTTATA
* * * * * * *
747588 CCACCATTTTTCACAGAATCAAAGCTTGTCTCTTATAGAAGACAAACATGAATAGTCATGCTAAT
1 CCACCATTTTTCATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAATCATACTAAT
* * * * *
747653 CCACATTCTTTTCAAGATTAGGCAT-CATAACCATAGTCTTCTCATTAGGATGCACGATATTGAT
66 CCCCATTCTTTTTAGGATTAGGC-TCCATAAACATAGTCTTCTCATTAGGATACACGATATTGAT
* * * * * *
747717 G-TTTAGGTTTCAAAAGAGAGGCAT-TTTTTCCCA--A-TTTTTGTAAAGTCTAAGTTCGTGCCA
130 GCTTT-GGTTTCACAAGAAAGG--TGTTCTTCCCAGCAGTTTTTGTAAAGTCTATGTTTGTGCCT
* * * *
747777 CAAATGTGAGAAACATGGATTCTAGTAATGATCTTCGTTTATTTTGTGATTAGGCACTATAAACA
192 CAAGTGTGACAAACATGGATTCTAGTAATGATCTTCGTTCATTTTCTGATTAGGCACTATAAACA
* * * *
747842 CATTCTCCTTC-TTAGGATAAATGATGT--TGATGATTTTTTTTTGCTTGGAAATCTTTTCTTTG
257 CATT-TGCATCATTAGGATAAATGAT-TACTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTG
* * * * *
747904 CCCCATTTTCCTTAAAATC-AAGATTGATCCCTTAAATAAGATAAGCATCGATTCTCACAACAGT
320 CCCTATTTTCCTTAAAATCAAAG-TTCATCCCATAAATAAGACAAGCATCGATTCTCATAACAGT
* * * * * *
747968 CTCCACTCTTTTGAAGATCGGA-AACCAAAAACACATTCCCTTCATTAGCATACATGAAATTGAT
384 CCCCATTCTTTTCAAGAT-GAAGAACCAAAAACACATTCCCTTCATTAGGATACATGAGATTGAT
* *
748032 GCTTTGAG-GTCACAAGACAAGCTTTACTTT
448 GC-TTG-GTGTCACAAGAAAAGCTTTTCTTT
* * *
748062 TCACTATTTTTCATAGAATCAAAGTTTGTCTCTTAAATAACACAAACATTAATAATCATACTAAT
1 CCACCATTTTTCATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAATCATACTAAT
* * *
748127 CCCCATT-TTTTTAGGATTAGGCTCCATAAGCATAGTCTTCTCATTAGGATACATGATATT-AAG
66 CCCCATTCTTTTTAGGATTAGGCTCCATAAACATAGTCTTCTCATTAGGATACACGATATTGATG
*
748190 ACTTTGGTTTCACAAGAAAGGTGTTCTTCCCAGCAGTTTTTGTAAAGTCTATGTTTGTGCTTCAA
131 -CTTTGGTTTCACAAGAAAGGTGTTCTTCCCAGCAGTTTTTGTAAAGTCTATGTTTGTGCCTCAA
* * * * *
748255 GTGTGACAAACATGGATTTTAGTAATGAACTTCGTTCATTTTCTAATTAGGTACTATAAACACCT
195 GTGTGACAAACATGGATTCTAGTAATGATCTTCGTTCATTTTCTGATTAGGCACTATAAACACAT
748320 TTGCATCATTAGGATAAATGATTACTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTA
260 TTGCATCATTAGGATAAATGATTACTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTA
* ***
748385 TTTTCCTTAAAATCAAAGTTCATCCCATAAATAAGGCAAGCATCGATTCTCATATTGGTCCCCAT
325 TTTTCCTTAAAATCAAAGTTCATCCCATAAATAAGACAAGCATCGATTCTCATAACAGTCCCCAT
* ** * * *
748450 TCTTTTCAAGATTAAGAACCACCAACGCATTCCCTTCATTTGGGTACATGAGATTGATGCTTGGT
390 TCTTTTCAAGATGAAGAACCAAAAACACATTCCCTTCATTAGGATACATGAGATTGATGCTTGGT
* *
748515 GTCGCAAGAAAAGGTTTTCTTT
455 GTCACAAGAAAAGCTTTTCTTT
*
748537 CCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAATCATACTAAT
1 CCACCATTTTTCATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAATCATACTAAT
* * *
748602 CCCCATTCTTTTTAGAATGAGGCTCCATAAACATAGTCTTCTCA-TACAGATACACGATATTGAT
66 CCCCATTCTTTTTAGGATTAGGCTCCATAAACATAGTCTTCTCATTA-GGATACACGATATTGAT
* * *
748666 GCTTTGGTTTCGCAAGAAAGGTGTTCTTCCTAGCAGTTTTTGTAAAGTCTATGTTTGTGCTTCAA
130 GCTTTGGTTTCACAAGAAAGGTGTTCTTCCCAGCAGTTTTTGTAAAGTCTATGTTTGTGCCTCAA
* *
748731 GTGTGACAAACATGGATTCTAGTAATGATCTTCGTTCATTTTCTGATTAGGCACTATAAGCACCT
195 GTGTGACAAACATGGATTCTAGTAATGATCTTCGTTCATTTTCTGATTAGGCACTATAAACACAT
*
748796 TTGCGTCATTAGGATAAATGATTACTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTA
260 TTGCATCATTAGGATAAATGATTACTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTA
* * ***
748861 TTTTCCTTAAAATCAAAGTTCATCCCATAAATAAGGCAAGCATTGATTCTCATATTGGTCCCCAT
325 TTTTCCTTAAAATCAAAGTTCATCCCATAAATAAGACAAGCATCGATTCTCATAACAGTCCCCAT
* ** ** * * *
748926 TCTTTTCAAGATTAAGAACCAGCAATGCATTCTCTTTATTTGGATACATGAGATTGATGCTTGGT
390 TCTTTTCAAGATGAAGAACCAAAAACACATTCCCTTCATTAGGATACATGAGATTGATGCTTGGT
* * *
748991 GTCGCAACAAAAGGTTTTCTTT
455 GTCACAAGAAAAGCTTTTCTTT
* * *
749013 CCACCGTTTTTAATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAATGATACTAAT
1 CCACCATTTTTCATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAATCATACTAAT
* *
749078 CCCCATTCTTTTTA-GATTGAGGCTCCATAAACATAGTCTTCTCATAAGGATGCACGATATTGAT
66 CCCCATTCTTTTTAGGATT-AGGCTCCATAAACATAGTCTTCTCATTAGGATACACGATATTGAT
** * * *
749142 GCTTTGGTTTCGTAAGAAAGGTGTTCTTCCCACCAGTTTTTGTAAAGTTTGTGTTTGTGCCTCAA
130 GCTTTGGTTTCACAAGAAAGGTGTTCTTCCCAGCAGTTTTTGTAAAGTCTATGTTTGTGCCTCAA
* * * * * * * *
749207 GTGGGATAAACGTAGTTTCTAGTAATGATTTTCATTCATTTTCTGATTAGGCACTATAAACATAT
195 GTGTGACAAACATGGATTCTAGTAATGATCTTCGTTCATTTTCTGATTAGGCACTATAAACACAT
* * * * * *
749272 TCGCATCAGTAGGATGAATGA-TACTAATGATTTTCTATTGCATGAAAATCTTTTCTTTGCCCTA
260 TTGCATCATTAGGATAAATGATTACTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTA
* * * * *
749336 TTTTCTTTAAAATCAAAGTTCGTACCATAAATAAGACAAGCATTGATTCT-AGTAACAGTCTCCA
325 TTTTCCTTAAAATCAAAGTTCATCCCATAAATAAGACAAGCATCGATTCTCA-TAACAGTCCCCA
* * * * * * *
749400 TTTTTTTCTAGATTG-GGAACCAAAAACACTTTCTCTTCCTTAGGATACATGACATTGATGCTTT
389 TTCTTTTCAAGA-TGAAGAACCAAAAACACATTCCCTTCATTAGGATACATGAGATTGATGC-TT
* * *
749464 GGGGTTACAAGATAAGCTTTTCTTT
452 GGTGTCACAAGAAAAGCTTTTCTTT
* * * *
749489 ACACCATTTTTGATAGAATCAAAGCTCGTCTCT
1 CCACCATTTTTCATAGAATCAAAGTTTGTCTCT
749522 CAAAGAGACA
Statistics
Matches: 1289, Mismatches: 150, Indels: 40
0.87 0.10 0.03
Matches are distributed among these distances:
471 1 0.00
472 11 0.01
473 60 0.05
474 72 0.06
475 330 0.26
476 809 0.63
477 6 0.00
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (476 bp):
CCACCATTTTTCATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAATCATACTAAT
CCCCATTCTTTTTAGGATTAGGCTCCATAAACATAGTCTTCTCATTAGGATACACGATATTGATG
CTTTGGTTTCACAAGAAAGGTGTTCTTCCCAGCAGTTTTTGTAAAGTCTATGTTTGTGCCTCAAG
TGTGACAAACATGGATTCTAGTAATGATCTTCGTTCATTTTCTGATTAGGCACTATAAACACATT
TGCATCATTAGGATAAATGATTACTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTAT
TTTCCTTAAAATCAAAGTTCATCCCATAAATAAGACAAGCATCGATTCTCATAACAGTCCCCATT
CTTTTCAAGATGAAGAACCAAAAACACATTCCCTTCATTAGGATACATGAGATTGATGCTTGGTG
TCACAAGAAAAGCTTTTCTTT
Found at i:748686 original size:158 final size:157
Alignment explanation
Indices: 748502--749183 Score: 388
Period size: 158 Copynumber: 4.3 Consensus size: 157
748492 GGTACATGAG
*
748502 ATTGATGC-TTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGT
1 ATTGATGCTTTGGTTTCGCAAG-AAAGGTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGT
*
748566 CTCTTAAATAAGACAAACATTAATAATCATACTAATCCCCATTCTTTTTAGAATGAGGCTCCATA
65 CTCTTAAATAAGACAAACATTAATAATCATACTAATCCCCATTCTTTTTAGAATGAGGCACCATA
*
748631 AACATAGTCTTCTCATACAGATACACGAT
130 AACATACTCTTCTCATA-AGATACACGAT
* * * *
748660 ATTGATGCTTTGGTTTCGCAAGAAAGGTGTTC-TTCCTAGCAGTTTTTG-TA-AAGTCTATGTTT
1 ATTGATGCTTTGGTTTCGCAAGAAAGGTTTTCTTTCC-ACCA-TTTTTGATAGAA-TCAAAGTTT
* * ** ** * * ** * *
748722 GTGCT-TCAAGTGTGACAAACATGGAT--TCTAGTAATGATCTTCGTTCATTTTCT-G-ATTAGG
63 GT-CTCTTAAATAAGACAAACATTAATAATC-A-TACTAATCCCCATTC-TTTT-TAGAATGAGG
* * * * * *
748782 CACTATAAGCA-CCT-TTGCGTCATTAGGATAAATGATT
123 CACCATAAACATACTCTT-C-TCA-TAAGATACACGA-T
* * ** * * ** * *** * **
748819 ACTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC-CTATTTTCCTTAAAATCAAAGTTCA
1 ATTGATGCTTTGGTTTCGCA-AGAAAGGTTTTCTTT-CCACCATTTTTGATAGAATCAAAGTTTG
* * * * * ** * ** * * * *
748883 TCCCATAAATAAGGCAAGCATTGATTCTCATATTGGTCCCCATTCTTTTCA-AGATTAAGAACCA
64 TCTCTTAAATAAGACAAACATTAATAATCATACTAATCCCCATTCTTTTTAGA-ATGAGGCACCA
* * * ** * *
748947 GCAATGCATTCTCTT-T-ATTTGGATACATGAG
128 -TAA-ACATACTCTTCTCA-TAAGATACACGAT
* * * *
748978 ATTGATGC-TTGGTGTCGCAACAAAAGGTTTTCTTTCCACCGTTTTTAATAGAATCAAAGTTTGT
1 ATTGATGCTTTGGTTTCGCAA-GAAAGGTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGT
* * *
749042 CTCTTAAATAAGACAAACATTAATAATGATACTAATCCCCATTCTTTTTAGATTGAGGCTCCATA
65 CTCTTAAATAAGACAAACATTAATAATCATACTAATCCCCATTCTTTTTAGAATGAGGCACCATA
* *
749107 AACATAGTCTTCTCATAAGGATGCACGAT
130 AACATACTCTTCTCATAA-GATACACGAT
* * *
749136 ATTGATGCTTTGGTTTCGTAAGAAAGGTGTTCTTCCCACCAGTTTTTG
1 ATTGATGCTTTGGTTTCGCAAGAAAGGTTTTCTTTCCACCA-TTTTTG
749184 TAAAGTTTGT
Statistics
Matches: 372, Mismatches: 116, Indels: 71
0.67 0.21 0.13
Matches are distributed among these distances:
156 11 0.03
157 15 0.04
158 191 0.51
159 74 0.20
160 62 0.17
161 8 0.02
162 7 0.02
163 2 0.01
164 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37
Consensus pattern (157 bp):
ATTGATGCTTTGGTTTCGCAAGAAAGGTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTC
TCTTAAATAAGACAAACATTAATAATCATACTAATCCCCATTCTTTTTAGAATGAGGCACCATAA
ACATACTCTTCTCATAAGATACACGAT
Found at i:751965 original size:474 final size:474
Alignment explanation
Indices: 751028--751991 Score: 1282
Period size: 474 Copynumber: 2.0 Consensus size: 474
751018 GCAAAGTATG
* * *
751028 TGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACTTGAATAGTCATACTTATCCCCATTCCT
1 TGATAGAATCAAAGTTTAGCTCTTAAATAAGACAAACTTGAATAGTCATACTAATCCCAATTCCT
* * * *
751093 TTTAGGATTAGGCAGCAAAAACATAGTCTTCTCATTAGGATAGATGACATTATTGTTGTGGTTTC
66 TTTAGGATTAGGCAGCAAAAACATAGTCCTCTCATAAGGATACACGACATTATTGTTGTGGTTTC
* *
751158 GCAAGAAAGACTTTCTTCCCACCAATTTTTCTAAAGTCTAAGTTCATGCCTCAAATGTGACAAAC
131 GCAAAAAAGACTTTCTTCCCACCAATTTTTCTAAAGTCTAAGTTCATGCCTCAAATGGGACAAAC
* * *
751223 ATGGATTCTAGTAATGATCTTCATTTATTTTGTGATTAGGTACTAGAAACACATTGTCCTTATTA
196 ATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTACAAACACATTGTCCTTATTA
* * *
751288 GGATAAATGATAATGATGATTTTCTTTTGCTTGGAAATCTTTTCTTAACCCTATTTTCCTTAAAA
261 GGATAAATGATAATAATGATTTTCTTTGGCATGGAAATCTTTTCTT-ACCCTATTTTCCTTAAAA
* * * * * *
751353 TCAAAATTAATCCCTTAAATAAGATAAGCATCGATTCTCGTAATAGTCTCCACTCTTTTCAGGAT
325 ACAAAATTAATCCCTTAAATAAAACAAGCATCGATTCTCATAACAGTCTCCACTATTTTCAGGAT
*
751418 TGGAAACCAAAAACATATTCCCTTCATTAGAATACATGACATTGATGCTTTGGGTCACAAGAAAA
390 TGGAAACCAAAAACATATTCCCTTCATTAGAATACATGACATTCATGCTTTGGGTCACAAGAAAA
* **
751483 GGTTTTCTTTCCACTGTTTT
455 GCTTTTCTTTCCACCATTTT
* *
751503 TGATAGAATCAAAGTTT-GCTCTTAAATAAGACAAACATT-AATAGTCATACTAATCCTAATTCT
1 TGATAGAATCAAAGTTTAGCTCTTAAATAAGACAAAC-TTGAATAGTCATACTAATCCCAATTCC
** * * *
751566 TTTTAGGATTAGGCTTCATAAATATAGTCCTCTCATAAGGATACACGATATTGA-TGCTT-TGGT
65 TTTTAGGATTAGGCAGCAAAAACATAGTCCTCTCATAAGGATACACGACATT-ATTG-TTGTGGT
* * * * * ** *
751629 TTTGCAAAAAAG-GTGTTCTTCCCACCAGTTTTTGTAAAGTCTATGTTTGTGCCTCAAGTGGGAC
128 TTCGCAAAAAAGACT-TTCTTCCCACCAATTTTTCTAAAGTCTAAGTTCATGCCTCAAATGGGAC
*
751693 AAACATGGATTCTAGTAATGATCTTCATTCATTTTTTGATTAGGCACTACAAACACATT-TGCCT
192 AAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTACAAACACATTGT-CCT
* *
751757 TATTAGGATAAATGATACTAATGATTTTCTTTGGCATGGAAATCTTTTCTCT-GCCTATTTTCCT
256 TATTAGGATAAATGATAATAATGATTTTCTTTGGCATGGAAATCTTTTCT-TACCCTATTTTCCT
* * * * *
751821 TAAAAACAAAGTTCAT-CCTATAAATAAAACAAGGATTGATTCTCATAACAGTCTCCATTATTTT
320 TAAAAACAAAATTAATCCCT-TAAATAAAACAAGCATCGATTCTCATAACAGTCTCCACTATTTT
* * *
751885 CCA-GATTGGAAACCAAAAACACT-TTCTCTTCATTAGGATATATGACATTCATGCTTTGGTGTC
384 -CAGGATTGGAAACCAAAAACA-TATTCCCTTCATTAGAATACATGACATTCATGCTTTGG-GTC
* *
751948 TCAAGACAAGCTTTTCTTTCCACCATTTT
446 ACAAGAAAAGCTTTTCTTTCCACCATTTT
751977 TGATAGAATCAAAGT
1 TGATAGAATCAAAGT
751992 CCGTTCCTCA
Statistics
Matches: 426, Mismatches: 53, Indels: 21
0.85 0.11 0.04
Matches are distributed among these distances:
472 3 0.01
473 112 0.26
474 288 0.68
475 23 0.05
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.37
Consensus pattern (474 bp):
TGATAGAATCAAAGTTTAGCTCTTAAATAAGACAAACTTGAATAGTCATACTAATCCCAATTCCT
TTTAGGATTAGGCAGCAAAAACATAGTCCTCTCATAAGGATACACGACATTATTGTTGTGGTTTC
GCAAAAAAGACTTTCTTCCCACCAATTTTTCTAAAGTCTAAGTTCATGCCTCAAATGGGACAAAC
ATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTACAAACACATTGTCCTTATTA
GGATAAATGATAATAATGATTTTCTTTGGCATGGAAATCTTTTCTTACCCTATTTTCCTTAAAAA
CAAAATTAATCCCTTAAATAAAACAAGCATCGATTCTCATAACAGTCTCCACTATTTTCAGGATT
GGAAACCAAAAACATATTCCCTTCATTAGAATACATGACATTCATGCTTTGGGTCACAAGAAAAG
CTTTTCTTTCCACCATTTT
Found at i:752052 original size:474 final size:473
Alignment explanation
Indices: 751170--752099 Score: 1128
Period size: 474 Copynumber: 2.0 Consensus size: 473
751160 AAGAAAGACT
*
751170 TTCTTCCCACCAATTTTTCTAAAGTCTAAGTTCATGCCTCAAATGTGACAAACATGGATTCTAGT
1 TTCTTCCCACCAATTTTTCTAAAGTCTAAGTTCATGCCTCAAATGGGACAAACATGGATTCTAGT
* * *
751235 AATGATCTTCATTTATTTTGTGATTAGGTACTAGAAACACATTGTCCTTATTAGGATAAATGATA
66 AATGATCTTCATTCATTTTGTGATTAGGCACTACAAACACATTGTCCTTATTAGGATAAATGATA
* * * *
751300 ATGATGATTTTCTTTTGCTTGGAAATCTTTTCTTAACCCTATTTTCCTTAAAATCAAAATTAATC
131 ATAATGATTTTCTTTGGCATGGAAATCTTTTCTT-ACCCTATTTTCCTTAAAAACAAAATTAATC
* * * * *
751365 CCTTAAATAAGATAAGCATCGATTCTCGTAATAGTCTCCACTCTTTTCAGGATTGGAAACCAAAA
195 CCTTAAATAAAACAAGCATCGATTCTCATAACAGTCTCCACTATTTTCAGGATTGGAAACCAAAA
* *
751430 ACATATTCCCTTCATTAGAATACATGACATTGATGCTTTGGGTCACAAGAAAAGGTTTTCTTTCC
260 ACATATTCCCTTCATTAGAATACATGACATTCATGCTTTGGGTCACAAGAAAAGCTTTTCTTTCC
** ** * *
751495 ACTGTTTTTGATAGAATCAAAGTTTGCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCT
325 ACCATTTTTGATAGAATCAAAGTCCGCTCTCAAAGAAGACAAACATTAATAGTCATACTAATCCT
**** **
751560 AATTCTTTTTAGGATTAGGCTTCATAAATATAG-TCCTCTCA-TA-AGGATACACGATATTGATG
390 AATTCTACACAGGATTAGGCAACATAAATAT-GTTCCTCTCAGTACA--ATACACGATATTGATG
751622 CTTTGGTTTTGCAAAAAAGGTG
452 CTTTGGTTTTGCAAAAAAGGTG
* * * ** *
751644 TTCTTCCCACCAGTTTTTGTAAAGTCTATGTTTGTGCCTCAAGTGGGACAAACATGGATTCTAGT
1 TTCTTCCCACCAATTTTTCTAAAGTCTAAGTTCATGCCTCAAATGGGACAAACATGGATTCTAGT
*
751709 AATGATCTTCATTCATTTTTTGATTAGGCACTACAAACACATT-TGCCTTATTAGGATAAATGAT
66 AATGATCTTCATTCATTTTGTGATTAGGCACTACAAACACATTGT-CCTTATTAGGATAAATGAT
* * * *
751773 ACTAATGATTTTCTTTGGCATGGAAATCTTTTCTCT-GCCTATTTTCCTTAAAAACAAAGTTCAT
130 AATAATGATTTTCTTTGGCATGGAAATCTTTTCT-TACCCTATTTTCCTTAAAAACAAAATTAAT
* * *
751837 -CCTATAAATAAAACAAGGATTGATTCTCATAACAGTCTCCATTATTTTCCA-GATTGGAAACCA
194 CCCT-TAAATAAAACAAGCATCGATTCTCATAACAGTCTCCACTATTTT-CAGGATTGGAAACCA
* * * * *
751900 AAAACACT-TTCTCTTCATTAGGATATATGACATTCATGCTTTGGTGTCTCAAGACAAGCTTTTC
257 AAAACA-TATTCCCTTCATTAGAATACATGACATTCATGCTTTGG-GTCACAAGAAAAGCTTTTC
* * * ** * *
751964 TTTCCACCATTTTTGATAGAATCAAAGTCCGTTCCTCAAAGGAGAC-AACCTTGGGTTGTCGTAA
320 TTTCCACCATTTTTGATAGAATCAAAGTCCGCT-CTCAAAGAAGACAAACATT-AATAGTCAT-A
* * * * *
752028 C-CAT-CTCCA-TCTACACATGATTAGGCAACATAAATATGTTCTTCTCAGTACAATACACGTTA
382 CTAATCCT-AATTCTACACAGGATTAGGCAACATAAATATGTTCCTCTCAGTACAATACACGATA
752090 TTGATGCTTT
446 TTGATGCTTT
752100 AACTTCTCAA
Statistics
Matches: 385, Mismatches: 58, Indels: 26
0.82 0.12 0.06
Matches are distributed among these distances:
472 3 0.01
473 112 0.29
474 247 0.64
475 20 0.05
476 3 0.01
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (473 bp):
TTCTTCCCACCAATTTTTCTAAAGTCTAAGTTCATGCCTCAAATGGGACAAACATGGATTCTAGT
AATGATCTTCATTCATTTTGTGATTAGGCACTACAAACACATTGTCCTTATTAGGATAAATGATA
ATAATGATTTTCTTTGGCATGGAAATCTTTTCTTACCCTATTTTCCTTAAAAACAAAATTAATCC
CTTAAATAAAACAAGCATCGATTCTCATAACAGTCTCCACTATTTTCAGGATTGGAAACCAAAAA
CATATTCCCTTCATTAGAATACATGACATTCATGCTTTGGGTCACAAGAAAAGCTTTTCTTTCCA
CCATTTTTGATAGAATCAAAGTCCGCTCTCAAAGAAGACAAACATTAATAGTCATACTAATCCTA
ATTCTACACAGGATTAGGCAACATAAATATGTTCCTCTCAGTACAATACACGATATTGATGCTTT
GGTTTTGCAAAAAAGGTG
Found at i:753621 original size:469 final size:463
Alignment explanation
Indices: 752599--754033 Score: 1505
Period size: 469 Copynumber: 3.1 Consensus size: 463
752589 TTTTTCATAT
* * * * * * *
752599 AATCAAAGC-TTGTCTCTTAAATAAGACAAGCATGAATACTCATGCTAATCCACATTCTTTTTAG
1 AATCAAA-CTTTGTCCCTTAAATAAGACAAACATAAATAGTCATACTAATCCCCATTATTTTTAG
** *
752663 GATTAGGCACCATAACCATAGTCTTCTCAT--T-A-GGATGATGTT---TTT-GTTTTGAAAAAA
65 GATTAGGCACCATAACCATAGTCTTCTCATAATGATACATGATATTAGCTTTGGTTTTGAAAAAA
* * * *
752720 AGGCATTTC--CCCACCAATTTTTGTAAAGTCTATGTTCGTGCCACAAATGTGACAAACATTGAT
130 AGGC-TTTCTTCCCACCAATTTTTGTAAAGTCTATGTTCGTACCTCAAATGAGACAAACATGGAT
* *
752783 TCTAGTAATGATCTTCATT-TTCTATGC-TT-CGCTATCGTAAACACATTCTCCTCATTAGGATA
194 TCTAGTAATGATCTTCATTATT-T-TGCATTAGGC-ATTGTAAACACATTCTCCTCATTAGGATA
* *
752845 AATGATATTGGTGATTTTCCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAGATCCA
256 AATGATATTGATGATTTT--TTTT--A--GAAATCTTTTCTTTGCCCTATTTTCCTTAA-ATCAA
* * * * * *
752910 AATTCATCCCATAAATATCACAAGCATTGATTCTTGTAGA-AGTCCCCATTATTTTCGAGATTGG
314 AATTCATCCCATAAATATGACAAGCATCGATTCTCGTA-ACAGTCTCCATTCTTTTCAAGATTGG
* * * * * *
752974 GAACCAAGAACACATTCCCTTCATTAAGATATATGATATTGATGTTTTGGTATTGCAAGAAAA-G
378 AAACCAA-AACGCATTCCCTTCATT-AGATACATGACATTGATGCTTTGGTGTTGCAAGAAAAGG
*
753038 TTTTTCTTT-CACCATTTTT-AATAG
441 TTTTT-TTTCCA-CTTTTTTGAA-AG
* * *
753062 AATCAAAGTTTGTCCCTTAAATAAAACAAACATAAATAGTCATACTAATCCCCATTATTTTCAGG
1 AATCAAACTTTGTCCCTTAAATAAGACAAACATAAATAGTCATACTAATCCCCATTATTTTTAGG
* * * *
753127 ATCAAGCACCATAACCATAGTCTTCTCATAATGATACATGATATTAACGCTTTGGTTTCGTAAAA
66 ATTAGGCACCATAACCATAGTCTTCTCATAATGATACATGATATT-A-GCTTTGGTTTTGAAAAA
* * * *
753192 AAGGCTTTCTTCCCACTAATTTTTGTAAAGTCTAAGTTCATACCTGAAATGAGACAAACATGGAT
129 AAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTATGTTCGTACCTCAAATGAGACAAACATGGAT
* * *
753257 TCTAATAATGACCTTCATTGATTTTGCGATTAGGCATTGTAAACACATTCTCCTCATTAGGATAG
194 TCTAGTAATGATCTTCATT-ATTTTGC-ATTAGGCATTGTAAACACATTCTCCTCATTAGGATAA
* * * *
753322 ATGATATTAAAGATTTTTTTTAG-AAT-TTTTTTTTGCCCTATTTTCCTTGAAATCAAAATTTAT
257 ATGATATTGATGATTTTTTTTAGAAATCTTTTCTTTGCCCTATTTTCCTT-AAATCAAAATTCAT
* * *
753385 -CAATTAAATATGACAAGCATCGATTCTCATAACAGTCTCCACTCTTTTCAAGATTGGAAACCCA
321 CCCA-TAAATATGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGAAA-CCA
* * **
753449 AAACGCATTCCCTTGATTAGGATACATGACATTGATGCTTTGGGGTCACAAGAAAAGGTTTTTTT
384 AAACGCATTCCCTTCATTA-GATACATGACATTGATGCTTTGGTGTTGCAAGAAAAGGTTTTTTT
753514 TCCACTGTTTTTGAAAG
448 TCCACT-TTTTTGAAAG
* *
753531 AATCAAACTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTATTTTTAGG
1 AATCAAACTTTGTCCCTTAAATAAGACAAACATAAATAGTCATACTAATCCCCATTATTTTTAGG
* * * * * *
753596 ATTAGGCTCCATAAACATAGTCTTCTCATAAGGATACATAATATTGATGCTTTGGTTTTGCAAGA
66 ATTAGGCACCATAACCATAGTCTTCTCATAATGATACATGATATT-A-GCTTTGGTTTTGAAAAA
* * ** *
753661 AAGG-TGTTCTTCCCACCAGTTTTTGTAAAGTCTATGTTTGTACCTCAGGTGGGACAAACATGGA
129 AAGGCT-TTCTTCCCACCAATTTTTGTAAAGTCTATGTTCGTACCTCAAATGAGACAAACATGGA
* * * *
753725 TTCTAGTAATGATCTTCATTCATTTT-CTAATTAGGCACTATAAACATATTCGCCTCATTAGGAT
193 TTCTAGTAATGATCTTCATT-ATTTTGC--ATTAGGCATTGTAAACACATTCTCCTCATTAGGAT
* *
753789 AAATGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAACCAA
255 AAATGATATTGATGA-TTT-TTTT---TAGAAATCTTTTCTTTGCCCTATTTTCCTT-AAATCAA
* * * * *
753854 AGTTCATCCCATAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCCATATTGGA
314 AATTCATCCCATAAATATGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGA
* ** * *
753919 AACCAAAA-GCACTTTCTCTTCATTTAGATACATGACATTGATGGGTTGGTGTTGCAAGATAAGC
379 AACCAAAACGCA--TTCCCTTCA-TTAGATACATGACATTGATGCTTTGGTGTTGCAAGAAAAGG
* *
753983 TTTTCTTTCCACCTTTTTTGATAG
441 TTTTTTTTCCA-CTTTTTTGAAAG
* * *
754007 AATCATAGTTTGTCCCTTAAAGAAGAC
1 AATCAAACTTTGTCCCTTAAATAAGAC
754034 TACCTTGGGT
Statistics
Matches: 811, Mismatches: 120, Indels: 69
0.81 0.12 0.07
Matches are distributed among these distances:
463 81 0.10
465 1 0.00
466 1 0.00
467 11 0.01
468 126 0.16
469 257 0.32
470 6 0.01
471 4 0.00
472 8 0.01
473 14 0.02
474 75 0.09
475 10 0.01
476 208 0.26
477 9 0.01
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.37
Consensus pattern (463 bp):
AATCAAACTTTGTCCCTTAAATAAGACAAACATAAATAGTCATACTAATCCCCATTATTTTTAGG
ATTAGGCACCATAACCATAGTCTTCTCATAATGATACATGATATTAGCTTTGGTTTTGAAAAAAA
GGCTTTCTTCCCACCAATTTTTGTAAAGTCTATGTTCGTACCTCAAATGAGACAAACATGGATTC
TAGTAATGATCTTCATTATTTTGCATTAGGCATTGTAAACACATTCTCCTCATTAGGATAAATGA
TATTGATGATTTTTTTTAGAAATCTTTTCTTTGCCCTATTTTCCTTAAATCAAAATTCATCCCAT
AAATATGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGAAACCAAAACGCA
TTCCCTTCATTAGATACATGACATTGATGCTTTGGTGTTGCAAGAAAAGGTTTTTTTTCCACTTT
TTTGAAAG
Found at i:756193 original size:476 final size:471
Alignment explanation
Indices: 754777--756291 Score: 1937
Period size: 476 Copynumber: 3.2 Consensus size: 471
754767 TCCTATAAAT
* * * *
754777 ATGGATTCCAGTAATGATCTTCATTCATTTTGTGATTAGGCGCTGTAAACACATTCTCCTCCTTA
1 ATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTA
* * * *
754842 GGATAAATGATATTGAAGATTTTCTTTTGTATGGAAATCTTTTCTTTGCCTTATTTTTCTTGAAA
66 GGATAAATGATATTGATGATTTTCTTTTGAATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAA
** *
754907 TCAAAATTTATCAGTTAAATATGATAAGCATCGATTCTCATAACAGTCTCTATTCTTTTCAAGAT
131 TCAAAATTTATCCTTTAAATATGATAAGCATCGATTCTC-T-A-AGTCTCCATTCTTTTCAAGAT
*
754972 TAGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAAAAA
193 TAGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAA
* * * *
755037 AGGTTTTCTTTCCACCGTTTGTGATA-GAATCAAAGTTGGTCTCCTCAATAAGATAAACATGAAT
258 A-GTTTTCTTTCCACCGTTT-T-ATATGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
* * * * * *
755101 AGTCATACTTATCTCCATTCTTTTTAAGATTACGCACCATAAACATAGTCTTTTCATTAGGATAG
320 AGTCATGCTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTTTCATAAGGATAG
* * * * * * *
755166 ATGATATTGATGCTTTGGTTTCGCAAAAAAGACTTTCTTCCCACCAACTTTTGTAAGGTCTAAGT
385 ATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTTTATGT
* *
755231 TCATGCCTTGATTGAGACAAAC
450 TCATGCCTTAAATGAGACAAAC
* * *
755253 ATGGATTCTAGTAATGATCTTCATTCATATTGTGATTAGGTACTATAAACACATTCTCCTTATTA
1 ATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTA
* ** * * *
755318 GGATAAATGATATTGATGGTTTTCTTTTGCTTAGAAATCTTTTCTTAGCCTTATTTTCTTTAAAA
66 GGATAAATGATATTGATGATTTTCTTTTGAATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAA
* * * *
755383 TCAAGATTAATCCTTTAAATAAGATAAGCATCGATTCTC--AGTCTCCA--CTTTTCAAGAAT-G
131 TCAAAATTTATCCTTTAAATATGATAAGCATCGATTCTCTAAGTCTCCATTCTTTTCAAGATTAG
* * * * *
755443 GAAACCTAA-AACATATTCCCTTCATTAGAATACATGACATTGATGCTTTGGGGTCACAGGAAAA
196 G-AACC-AAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAA
* * *
755507 GTTTTTCTTTCCACTGTTTTTTTGATAGAATCAAAGTTTGTCGCTTAAATAAGACAAACATGAAT
259 G-TTTTCTTTCCACCG-TTTTAT-AT-GAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
* * * * * * * *
755572 TGTAATGCTAAACCCCGTTCTTTTCAGGATTAGGCACCAAAAACATTGTCTTTTCATAAGGATAC
320 AGTCATGCTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTTTCATAAGGATAG
* * * * *
755637 ACGATATTGATGCCTTGGTTTTGCAAGAAATGCTTTCTTCCCACCAGTTTTTGTAAAGTTTATGC
385 ATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTTTATGT
* * *
755702 TCGTGCCTCAAATGAGACAAAT
450 TCATGCCTTAAATGAGACAAAC
* * * * * * * *
755724 ATGGATTCTAGTAATGATCTTCCTTCATTTCGTTATTTGGCACTATATACACTTTGTCCTTATTA
1 ATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTA
* *
755789 GGATAAATGATATTGACGATTTTCTTTTGAATGGAAATCTTTTTTTTGCCTTATTTTCCTTAAAA
66 GGATAAATGATATTGATGATTTTCTTTTGAATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAA
*
755854 TCAAAATTTATCCTTTAAATATGACAAGCATCGATTCTCGTAATGGTCTCCATTCTTTTCAAGAT
131 TCAAAATTTATCCTTTAAATATGATAAGCATCGATTCTC-TAA--GTCTCCATTCTTTTCAAGAT
* * *
755919 TAGGAACCAAGAACACAATCCTTTCATTAGGATACATGACATTTGACGCTTTGGTGTCGCAAGAA
193 TAGGAACCAAGAACACATTCCCTTCATTAGGATACATGACA-TTGATGCTTTGGTGTCGCAAGAA
* * * *
755984 AAGTTTTCTTTCCACCGTTTTATATCGAATCAAAGTTTATCTCTTAAACAAGACAAGCATTAATA
257 AAGTTTTCTTTCCACCGTTTTATAT-GAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATA
* * *
756049 GTCTTGCTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATAGT
321 GTCATGCTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTTTCATAAGGATAGA
* *
756114 TGATATTGACGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTTTAAAGTTTATGTT
386 TGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTTTATGTT
756179 CATGCCTTAAATGAGACAAAC
451 CATGCCTTAAATGAGACAAAC
* * * * * *
756200 GTGGATTCAAGTAATGATCTTTATTCATTTTGTGTTTCGGCACTATATACACATTCTCCTCATTA
1 ATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTA
* *
756265 GGATAAATGATACTAATGATTTTCTTT
66 GGATAAATGATATTGATGATTTTCTTT
756292 CGTCCTATGT
Statistics
Matches: 882, Mismatches: 140, Indels: 34
0.84 0.13 0.03
Matches are distributed among these distances:
468 4 0.00
469 79 0.09
470 5 0.01
471 309 0.35
474 1 0.00
476 399 0.45
477 7 0.01
478 54 0.06
479 24 0.03
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.38
Consensus pattern (471 bp):
ATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTA
GGATAAATGATATTGATGATTTTCTTTTGAATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAA
TCAAAATTTATCCTTTAAATATGATAAGCATCGATTCTCTAAGTCTCCATTCTTTTCAAGATTAG
GAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGT
TTTCTTTCCACCGTTTTATATGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCAT
GCTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTTTCATAAGGATAGATGATA
TTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTTTATGTTCATGC
CTTAAATGAGACAAAC
Found at i:758129 original size:474 final size:472
Alignment explanation
Indices: 757060--758037 Score: 1185
Period size: 474 Copynumber: 2.1 Consensus size: 472
757050 GGATTTTTTA
* * * ** * * **
757060 CCACCA-TTTTCATAGAATCAAAGTTTGTCTTTTAAATAAGACAAACATGAATAATC-ATGCTAA
1 CCACCATTTTTGATAAAATCAAAGTTCGTCTCATAAATAAGACAAACATAAATAGTCAAAAC-AA
** * *
757123 TCCCCATTCATTTCAGAATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGGT
65 TCCCCATTC-TCACAGGATTAGGCA-CATAAACATAGTCTTCTCATTAGGATACACGATATTGGT
* * * * *
757188 GTTTTGGTTTCGTAAGAAAGGCATTTTCCCACCAATTTTTATAAAGTCTAAGTTCATGCCTCAAA
128 GCTTAGCTTTCGCAAGAAACGCATTTTCCCACCAATTTTTATAAAGTCTAAGTTCATGCCTCAAA
* * *
757253 TGTGACAAACATAGATTCTAGTAATGATCTTCGTTCACTTTGTGATTAGGCATTATAAACACATT
193 TGAGACAAACATAGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATT
*
757318 CTCTTTATTAGAATAAATGATAATTGATGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCTAATT
258 CTCTTTATTAGAATAAATGATAACTGATGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCTAATT
* * *
757383 TTCCTTAAAATCAATATTCATCCCTTAAATATGACAAGCATTGAGTCTCATAATAGTCTCCATTC
323 TTCCTTAAAATCAATATTCATCCCATAAATAAGACAAGCATTGAGTCTCATAACAGTCTCCATTC
* * * **
757448 TTTTCAAGACTGGAACCAAGAGCATAATCCCTTCATTGGGATACAAGACATTGATGCTTTGGTAC
388 TTTTCAAGACTGGAACCAAAAACATAATCCCTTCAGTAAGATACAAGACATTGATGCTTTGGTAC
*
757513 CTCAAGAAAAGCTTTTCTTT
453 CGCAAGAAAAGCTTTTCTTT
* * *
757533 CCACCATTTTTGATAAAATCACAGTTTGTCTCATAAATAAGACAAACATAAATAGTCAAAATAAT
1 CCACCATTTTTGATAAAATCAAAGTTCGTCTCATAAATAAGACAAACATAAATAGTCAAAACAAT
*** * * * *
757598 CCCCATTCTTTTAGGATTAGGCACTATAAACATAGTCTTCTTATAAGGAGACACGATATTGATGC
66 CCCCATTCTCACAGGATTAGGCAC-ATAAACATAGTCTTCTCATTAGGATACACGATATTGGTGC
* * * * * * *
757663 TTAGCTTTTGCAGGAAACGCTTTCTTGCCACCAATTTTTGTAAAGTCTAAGTTCGTGCGTCAAAT
130 TTAGCTTTCGCAAGAAACGCATT-TTCCCACCAATTTTTATAAAGTCTAAGTTCATGCCTCAAAT
* * *
757728 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATGAACACATTC
194 GAGACAAACATAGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTC
* * *
757793 TTTTTATTAGGATAAATGAT-ACTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCT-AT
259 TCTTTATTAGAATAAATGATAACTGATG-TTTTCTTTTGCATGAAAATCTTTTCTTTG-CCTAAT
* * * * * *
757856 TTTCCTTAAAATCAA-AGTTCATCCCATATATAAGGCACGCATTGATTGTCGTAACAGTCTCCAT
322 TTTCCTTAAAATCAATA-TTCATCCCATAAATAAGACAAGCATTGAGTCTCATAACAGTCTCCAT
* * * * * *
757920 TCTTTTCCAGATTGGGAACCAAAAACACT-TTCTCTTTAGTAAGATACATGACATTGATGCTTTG
386 TCTTTTCAAGACT-GGAACCAAAAACA-TAATCCCTTCAGTAAGATACAAGACATTGATGCTTTG
** * *
757984 GTGTCGCAAGACAAGCTTTTTTTT
449 GTACCGCAAGAAAAGCTTTTCTTT
*
758008 CCACCATTTTTGATAGAATCAAAGTTCGTC
1 CCACCATTTTTGATAAAATCAAAGTTCGTC
758038 CCTCAAAAGA
Statistics
Matches: 429, Mismatches: 67, Indels: 16
0.84 0.13 0.03
Matches are distributed among these distances:
472 1 0.00
473 76 0.18
474 262 0.61
475 89 0.21
476 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (472 bp):
CCACCATTTTTGATAAAATCAAAGTTCGTCTCATAAATAAGACAAACATAAATAGTCAAAACAAT
CCCCATTCTCACAGGATTAGGCACATAAACATAGTCTTCTCATTAGGATACACGATATTGGTGCT
TAGCTTTCGCAAGAAACGCATTTTCCCACCAATTTTTATAAAGTCTAAGTTCATGCCTCAAATGA
GACAAACATAGATTCTAGTAATGATCTTCATTCACTTTGTGATTAGGCACTATAAACACATTCTC
TTTATTAGAATAAATGATAACTGATGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCTAATTTTC
CTTAAAATCAATATTCATCCCATAAATAAGACAAGCATTGAGTCTCATAACAGTCTCCATTCTTT
TCAAGACTGGAACCAAAAACATAATCCCTTCAGTAAGATACAAGACATTGATGCTTTGGTACCGC
AAGAAAAGCTTTTCTTT
Found at i:759677 original size:476 final size:469
Alignment explanation
Indices: 758479--759787 Score: 1462
Period size: 476 Copynumber: 2.8 Consensus size: 469
758469 TTCTTCACCG
* * * * *
758479 TATTTTCCTTAAAACCAAAGTTCATACCTTAAATAAGGCAAGCATTAATTCTCGTAATAGTCTCC
1 TATTTTCCTTAAAATCAAAGTTCAT-CCCTAAATAAGGAAAGCATTGATTCTCGTAACAGTCTCC
* ** * * *
758544 ATTCTTTCTAAGGCTCGGAACCAAAAACACATT-CATT-TTAATAGAATACATGACATTGATGCT
65 ATTTTTTC-AAGATTGGGAACC-AAAACACATTCCCTTCTT--TAGGATACATGACATTGATGCT
* *
758607 TTGGTGTCACAAGAAAAGCTTTTC-TTCCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAA
126 TTGGAGTCGCAAGAAAAGCTTTTCTTTCC-A-CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAA
* * * * * *
758671 -AGAGACAAACATGAAAACTCATACTATTCCCTATT-TTTTTAGCATTAGGCACCATAAACTTAG
189 GAGAGACAAACATGAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATAG
* ** **
758734 CTTTCTCATAAGGATGCAAGATATTGATGCTTTGGTTCCGCAAGAAAGGCTTTCTTCCCTTCAAT
254 TTTTCTCATAAGGATG-AAGATATTGATGCTTTGGTTCCTTAAGAAAGGCTTTCTTCCCACCAAT
* *
758799 TTTTGTAAAGTCTAAGTTTGTGCC-CTAAATGAGACAAACATGGATTAGGAATGATCTTCACTCG
318 TTTTGTAAAGTCTAAGTTCGTGCCTC-AAATGAGACAAACATGGATTAGGAATGATCTTCACTCA
* * *
758863 CTTTGTGATTCGACATTATAAAGACATTCTCCAAATTTGGAACAATGATATTGATGATTTTCTTT
382 CTTTGTGATTAGACACTATAAAGACATTCTCC-AATTAGGAACAATGATATTGATGATTTTCTTT
758928 TACATGGAAATATTTCCTTTACCC
446 TACATGGAAATATTTCCTTTACCC
* * * * * *
758952 CA-TTTCCTTAAAATCAAAATTCGTCCCTTAAAT-ATGACAAGCGTTGATTCTTGTAACAGTCTC
1 TATTTTCCTTAAAATCAAAGTTCATCCC-TAAATAAGGA-AAGCATTGATTCTCGTAACAGTCTC
* * * * *
759015 C-TCTTTTCAAGATTGGGAACCTAGAACACATTCCCTTCATTAGGATACATGACAATGATACTTT
64 CATTTTTTCAAGATTGGGAACC-AAAACACATTCCCTTCTTTAGGATACATGACATTGATGCTTT
* * * * * *
759079 GGCGTTGCAAGAAAAGGTTTTCTTTCTACCTTTTTGATAGATTCAAAGTTTGTCTCTTAAATATG
128 GGAGTCGCAAGAAAAGCTTTTCTTTCCACGTTTTTGATAGAATCAAAGTTTGTCTCTT-AA-A-G
* * * *
759144 AGAAACAAACTTGAATAGTCATACTGATCCCTATTCTTTTCACGATTAGGCACCATAAACATAGT
190 AGAGACAAACATGAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATAGT
* * * * * *
759209 TTTCTCATAAGGATAGACGATATTAATGGTGTGGTTCCTTAAGAGAGGCTTTCATCCCACCAATT
255 TTTCTCATAAGGAT-GAAGATATTGATGCTTTGGTTCCTTAAGAAAGGCTTTCTTCCCACCAATT
* * *
759274 TTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCA
319 TTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA-T-TAGGAATGATCTTCACTCA
* *
759339 TTTTGTGATTAGGCACTATAAACG-CATTCCTCTC-ATTAGGATA-AATGATATTGATGATTTT-
382 CTTTGTGATTAGACACTATAAA-GACATT-CTC-CAATTAGGA-ACAATGATATTGATGATTTTC
* * * * *
759400 TATTTGCATGGAAATCTTTTCTTTGCTC
443 T-TTTACATGGAAATATTTCCTTTACCC
* * *
759428 TATTTTCCTTGAAATCAAAGTTTATCCCTAGAATAAGGAAAGCATCGATTCTCGTAACAGTCTCC
1 TATTTTCCTTAAAATCAAAGTTCATCCCTA-AATAAGGAAAGCATTGATTCTCGTAACAGTCTCC
*
759493 ATTGTTTTCAAGATTGGGAATCAAAACCACATTCCCTTCTTTAGGATACATGACATTGATGCTTT
65 ATT-TTTTCAAGATTGGGAACCAAAA-CACATTCCCTTCTTTAGGATACATGACATTGATGCTTT
*
759558 GGAGTCGCAAGAAAAGCTTTTCTTTCCATCGTTTTTGATGGAATCAAAGTTTGTCTCTTAAAGA-
128 GGAGTCGCAAGAAAAGCTTTTCTTTCCA-CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAGAG
* * * *
759622 AGACAAACATGAATAGTTATACTAATCCCCATTCTTTTCAGGATTAAGCACCATAAACATAGTCT
192 AGACAAACATGAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATAGTTT
* * * * * * *
759687 TCTCATTAGGATTCATGATATTGATGTTTTGGTT--TTGCGAGAAAGGCTATCTTCCTACCAATT
257 TCTCATAAGGA-TGAAGATATTGATGCTTTGGTTCCTT--AAGAAAGGCTTTCTTCCCACCAATT
* * *
759750 TTTGTAAAGTTTAATTTCGTGCCTTAAATGAGACAAAC
319 TTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAAC
759788 CTTTTCTTTT
Statistics
Matches: 696, Mismatches: 111, Indels: 55
0.81 0.13 0.06
Matches are distributed among these distances:
469 28 0.04
470 61 0.09
471 16 0.02
472 47 0.07
473 30 0.04
474 118 0.17
475 4 0.01
476 223 0.32
477 55 0.08
478 9 0.01
479 78 0.11
480 27 0.04
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.35
Consensus pattern (469 bp):
TATTTTCCTTAAAATCAAAGTTCATCCCTAAATAAGGAAAGCATTGATTCTCGTAACAGTCTCCA
TTTTTTCAAGATTGGGAACCAAAACACATTCCCTTCTTTAGGATACATGACATTGATGCTTTGGA
GTCGCAAGAAAAGCTTTTCTTTCCACGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAGAGAGAC
AAACATGAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATAGTTTTCTC
ATAAGGATGAAGATATTGATGCTTTGGTTCCTTAAGAAAGGCTTTCTTCCCACCAATTTTTGTAA
AGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTAGGAATGATCTTCACTCACTTTGTGAT
TAGACACTATAAAGACATTCTCCAATTAGGAACAATGATATTGATGATTTTCTTTTACATGGAAA
TATTTCCTTTACCC
Found at i:760312 original size:19 final size:19
Alignment explanation
Indices: 760288--760434 Score: 141
Period size: 19 Copynumber: 8.6 Consensus size: 19
760278 TAGCCAAACT
760288 TGTATCGATACACAAAGTA
1 TGTATCGATACACAAAGTA
760307 TGTATCGAT--AC--A--A
1 TGTATCGATACACAAAGTA
760320 TGTATCGATACACAAAGTA
1 TGTATCGATACACAAAGTA
760339 TGTATCGAT--AC--A--A
1 TGTATCGATACACAAAGTA
760352 TGTATCGATACACAAAGTA
1 TGTATCGATACACAAAGTA
760371 TGTATCGAT--AC--A--A
1 TGTATCGATACACAAAGTA
760384 TGTATCGATACACAAAGTA
1 TGTATCGATACACAAAGTA
**
760403 TGTATCGATACACAAAAAA
1 TGTATCGATACACAAAGTA
760422 TTGTATCGATACA
1 -TGTATCGATACA
760435 TTGGCTTGTA
Statistics
Matches: 107, Mismatches: 2, Indels: 37
0.73 0.01 0.25
Matches are distributed among these distances:
13 30 0.28
15 9 0.08
17 9 0.08
19 47 0.44
20 12 0.11
ACGTcount: A:0.41, C:0.16, G:0.15, T:0.28
Consensus pattern (19 bp):
TGTATCGATACACAAAGTA
Found at i:760324 original size:13 final size:13
Alignment explanation
Indices: 760306--760395 Score: 72
Period size: 13 Copynumber: 6.0 Consensus size: 13
760296 TACACAAAGT
760306 ATGTATCGATACA
1 ATGTATCGATACA
760319 ATGTATCGATACACAAA
1 ATGTATCGAT--AC--A
760336 GTATGTATCGATACA
1 --ATGTATCGATACA
760351 ATGTATCGATACACAAA
1 ATGTATCGAT--AC--A
760368 GTATGTATCGATACA
1 --ATGTATCGATACA
760383 ATGTATCGATACA
1 ATGTATCGATACA
760396 CAAAGTATGT
Statistics
Matches: 65, Mismatches: 0, Indels: 24
0.73 0.00 0.27
Matches are distributed among these distances:
13 33 0.51
15 6 0.09
17 6 0.09
19 20 0.31
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.29
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:760329 original size:32 final size:32
Alignment explanation
Indices: 760288--760414 Score: 254
Period size: 32 Copynumber: 4.0 Consensus size: 32
760278 TAGCCAAACT
760288 TGTATCGATACACAAAGTATGTATCGATACAA
1 TGTATCGATACACAAAGTATGTATCGATACAA
760320 TGTATCGATACACAAAGTATGTATCGATACAA
1 TGTATCGATACACAAAGTATGTATCGATACAA
760352 TGTATCGATACACAAAGTATGTATCGATACAA
1 TGTATCGATACACAAAGTATGTATCGATACAA
760384 TGTATCGATACACAAAGTATGTATCGATACA
1 TGTATCGATACACAAAGTATGTATCGATACA
760415 CAAAAAATTG
Statistics
Matches: 95, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 95 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (32 bp):
TGTATCGATACACAAAGTATGTATCGATACAA
Found at i:762666 original size:21 final size:21
Alignment explanation
Indices: 762633--762682 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
762623 TTGCAAGTTG
*
762633 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
762655 AAATAATG-AGTTAGCTAAGAA
1 AAATAAAGAAGTTAGCTAAG-A
762676 AAATAAA
1 AAATAAA
762683 AACTTGCATA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 16 0.67
22 7 0.29
ACGTcount: A:0.56, C:0.04, G:0.18, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:766612 original size:13 final size:13
Alignment explanation
Indices: 766594--766629 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
766584 TTTTTCTTTT
766594 TATCGATACAATG
1 TATCGATACAATG
*
766607 TATCGATACACTG
1 TATCGATACAATG
766620 TATCGATACA
1 TATCGATACA
766630 GGGGGATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.36, C:0.19, G:0.14, T:0.31
Consensus pattern (13 bp):
TATCGATACAATG
Found at i:769219 original size:13 final size:13
Alignment explanation
Indices: 769201--769226 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
769191 TACACAAAGT
769201 ATGTATCGATACA
1 ATGTATCGATACA
769214 ATGTATCGATACA
1 ATGTATCGATACA
769227 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:769224 original size:32 final size:33
Alignment explanation
Indices: 769183--769246 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
769173 TAGCCAAACT
**
769183 TGTATCGATACACAAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
769215 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
769247 TTGGCTAGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 17 0.59
33 12 0.41
ACGTcount: A:0.42, C:0.16, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:770311 original size:106 final size:106
Alignment explanation
Indices: 770126--770338 Score: 399
Period size: 106 Copynumber: 2.0 Consensus size: 106
770116 CAAAAATCCT
770126 TATTATGATACATGACATTGATGGTTTGTCTTTGCAAGAAAGGCTTTTCTACCACCATTTTTCAT
1 TATTATGATACATGACATTGATGGTTTGTCTTTGCAAGAAAGGCTTTTCTACCACCATTTTTCAT
*
770191 AAAATCAAAGTTTGTCTCTTAAATAAGACAAACTTGAATAC
66 AAAATCAAAGTTTGTCTCTCAAATAAGACAAACTTGAATAC
770232 TATTATGATACATGACATTGATGGTTTGTCTTTGCAAGAAAGGCTTTTCTACCACCATTTTTCAT
1 TATTATGATACATGACATTGATGGTTTGTCTTTGCAAGAAAGGCTTTTCTACCACCATTTTTCAT
* *
770297 AGAATCAAAGTTTGTTTCTCAAATAAGACAAACTTGAATAC
66 AAAATCAAAGTTTGTCTCTCAAATAAGACAAACTTGAATAC
770338 T
1 T
770339 CATACTAATC
Statistics
Matches: 104, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
106 104 1.00
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.37
Consensus pattern (106 bp):
TATTATGATACATGACATTGATGGTTTGTCTTTGCAAGAAAGGCTTTTCTACCACCATTTTTCAT
AAAATCAAAGTTTGTCTCTCAAATAAGACAAACTTGAATAC
Found at i:772145 original size:27 final size:28
Alignment explanation
Indices: 772091--772156 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 28
772081 TTTTTCTTTT
*
772091 TTATTTATTTCTTTTCCTTTGAAATTTC
1 TTATTTATTTCTTTTCCTTTCAAATTTC
* *
772119 TTATTTATTTGTTTT-CTTTCATATTTC
1 TTATTTATTTCTTTTCCTTTCAAATTTC
* *
772146 TTGTTGATTTC
1 TTATTTATTTC
772157 ACTTCCTTGA
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
27 18 0.56
28 14 0.44
ACGTcount: A:0.15, C:0.12, G:0.06, T:0.67
Consensus pattern (28 bp):
TTATTTATTTCTTTTCCTTTCAAATTTC
Found at i:774185 original size:20 final size:20
Alignment explanation
Indices: 774162--774234 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
774152 ACAATTCAAA
774162 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
774182 GTATCGATACATGAAAAAAAT
1 GTATCGATACATG-TTGCAAT
774203 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
774223 GTATCGATACAT
1 GTATCGATACAT
774235 AAAAAAGATG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:774205 original size:21 final size:21
Alignment explanation
Indices: 774179--774255 Score: 95
Period size: 21 Copynumber: 3.7 Consensus size: 21
774169 TACATGTTGC
774179 AATGTATCGATACATGAAAAA
1 AATGTATCGATACATGAAAAA
****
774200 AATGTATCGATACATG-TTGC
1 AATGTATCGATACATGAAAAA
774220 AATGTATCGATACAT-AAAAA
1 AATGTATCGATACATGAAAAA
774240 AGATGTATCGATACAT
1 A-ATGTATCGATACAT
774256 TTCTTGGCAG
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
20 16 0.35
21 30 0.65
ACGTcount: A:0.44, C:0.12, G:0.16, T:0.29
Consensus pattern (21 bp):
AATGTATCGATACATGAAAAA
Found at i:774213 original size:41 final size:41
Alignment explanation
Indices: 774162--774255 Score: 172
Period size: 41 Copynumber: 2.3 Consensus size: 41
774152 ACAATTCAAA
774162 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAA-AT
1 GTATCGATACATGTTGCAATGTATCGATACAT-AAAAAAGAT
774203 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
774244 GTATCGATACAT
1 GTATCGATACAT
774256 TTCTTGGCAG
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
40 6 0.12
41 46 0.88
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.30
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:774312 original size:13 final size:13
Alignment explanation
Indices: 774294--774319 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
774284 TACAGCAAGT
774294 ATGTATCGATACA
1 ATGTATCGATACA
774307 ATGTATCGATACA
1 ATGTATCGATACA
774320 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:778402 original size:15 final size:15
Alignment explanation
Indices: 778382--778412 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
778372 TAAAAATGTC
*
778382 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
778397 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
778412 C
1 C
778413 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:780510 original size:13 final size:13
Alignment explanation
Indices: 780492--780529 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
780482 CATTTTTCCT
780492 TGTATCGATACAA
1 TGTATCGATACAA
*
780505 TGTATCGATACAC
1 TGTATCGATACAA
780518 TGTATCGATACA
1 TGTATCGATACA
780530 GGGTGATTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:782424 original size:48 final size:48
Alignment explanation
Indices: 782370--782465 Score: 192
Period size: 48 Copynumber: 2.0 Consensus size: 48
782360 GGGGAGATAA
782370 AGGAGAGAATGCGTGAATTACCTTATTAAGGGGGAGAATGTACAAATT
1 AGGAGAGAATGCGTGAATTACCTTATTAAGGGGGAGAATGTACAAATT
782418 AGGAGAGAATGCGTGAATTACCTTATTAAGGGGGAGAATGTACAAATT
1 AGGAGAGAATGCGTGAATTACCTTATTAAGGGGGAGAATGTACAAATT
782466 CGTAAAATTT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.38, C:0.08, G:0.29, T:0.25
Consensus pattern (48 bp):
AGGAGAGAATGCGTGAATTACCTTATTAAGGGGGAGAATGTACAAATT
Found at i:783040 original size:20 final size:20
Alignment explanation
Indices: 783017--783089 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
783007 ACAATTCAAA
783017 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
783037 GTATCGATACATGAAAAAAAT
1 GTATCGATACATG-TTGCAAT
783058 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
783078 GTATCGATACAT
1 GTATCGATACAT
783090 AAAAAAGATG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:783060 original size:21 final size:21
Alignment explanation
Indices: 783034--783110 Score: 95
Period size: 21 Copynumber: 3.7 Consensus size: 21
783024 TACATGTTGC
783034 AATGTATCGATACATGAAAAA
1 AATGTATCGATACATGAAAAA
****
783055 AATGTATCGATACATG-TTGC
1 AATGTATCGATACATGAAAAA
783075 AATGTATCGATACAT-AAAAA
1 AATGTATCGATACATGAAAAA
783095 AGATGTATCGATACAT
1 A-ATGTATCGATACAT
783111 TTCTTGGCAG
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
20 16 0.35
21 30 0.65
ACGTcount: A:0.44, C:0.12, G:0.16, T:0.29
Consensus pattern (21 bp):
AATGTATCGATACATGAAAAA
Found at i:783068 original size:41 final size:41
Alignment explanation
Indices: 783017--783110 Score: 172
Period size: 41 Copynumber: 2.3 Consensus size: 41
783007 ACAATTCAAA
783017 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAA-AT
1 GTATCGATACATGTTGCAATGTATCGATACAT-AAAAAAGAT
783058 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
783099 GTATCGATACAT
1 GTATCGATACAT
783111 TTCTTGGCAG
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
40 6 0.12
41 46 0.88
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.30
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:783167 original size:13 final size:13
Alignment explanation
Indices: 783149--783174 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
783139 TACAGCAAGT
783149 ATGTATCGATACA
1 ATGTATCGATACA
783162 ATGTATCGATACA
1 ATGTATCGATACA
783175 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:788368 original size:19 final size:19
Alignment explanation
Indices: 788344--788396 Score: 97
Period size: 19 Copynumber: 2.8 Consensus size: 19
788334 AGATTATGCT
*
788344 TTGTATTGATACATGCTCA
1 TTGTATCGATACATGCTCA
788363 TTGTATCGATACATGCTCA
1 TTGTATCGATACATGCTCA
788382 TTGTATCGATACATG
1 TTGTATCGATACATG
788397 AAACTGGCAG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.40
Consensus pattern (19 bp):
TTGTATCGATACATGCTCA
Found at i:795740 original size:29 final size:29
Alignment explanation
Indices: 795698--795764 Score: 91
Period size: 29 Copynumber: 2.3 Consensus size: 29
795688 CTTTGGTGGC
* *
795698 GAGACAACATGAGGATA-TTCTTCCTCAAT
1 GAGACGACGTGAGGATATTTC-TCCTCAAT
795727 GAGACGACGTGAGGATATTTCTCCTCAAT
1 GAGACGACGTGAGGATATTTCTCCTCAAT
*
795756 AAGACGACG
1 GAGACGACG
795765 AGCACGAGGA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
29 31 0.91
30 3 0.09
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.24
Consensus pattern (29 bp):
GAGACGACGTGAGGATATTTCTCCTCAAT
Found at i:796853 original size:19 final size:20
Alignment explanation
Indices: 796829--796876 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
796819 TATGCTTTGC
*
796829 ATCGATACATGCTC-ATTGT
1 ATCGATACATACTCAATTGT
796848 ATCGATACATACTCAATTGT
1 ATCGATACATACTCAATTGT
796868 ATCGATACA
1 ATCGATACA
796877 CGAAACTGGT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
19 13 0.48
20 14 0.52
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.33
Consensus pattern (20 bp):
ATCGATACATACTCAATTGT
Found at i:796952 original size:20 final size:20
Alignment explanation
Indices: 796907--796959 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
796897 CTAAGTGAAC
* *
796907 TGTATCGATATATAGGACAT
1 TGTATCGATACATAAGACAT
*
796927 TATATCGATACATGAAGA-AT
1 TGTATCGATACAT-AAGACAT
796947 TGTATCGATACAT
1 TGTATCGATACAT
796960 TATGCCCAAC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 25 0.89
21 3 0.11
ACGTcount: A:0.38, C:0.11, G:0.17, T:0.34
Consensus pattern (20 bp):
TGTATCGATACATAAGACAT
Found at i:797748 original size:19 final size:19
Alignment explanation
Indices: 797724--797779 Score: 94
Period size: 19 Copynumber: 2.9 Consensus size: 19
797714 TGTATGGATA
797724 CATTGTATCGATACATGCT
1 CATTGTATCGATACATGCT
*
797743 CATTGTATCGATACATACT
1 CATTGTATCGATACATGCT
797762 CAATTGTATCGATACATG
1 C-ATTGTATCGATACATG
797780 AAACTAGTAG
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
19 19 0.56
20 15 0.44
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.36
Consensus pattern (19 bp):
CATTGTATCGATACATGCT
Found at i:808677 original size:12 final size:12
Alignment explanation
Indices: 808660--808687 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
808650 AAAAATATTT
808660 TAAAGTTAAGTA
1 TAAAGTTAAGTA
808672 TAAAGTTAAGTA
1 TAAAGTTAAGTA
808684 TAAA
1 TAAA
808688 TGTTTTTCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.54, C:0.00, G:0.14, T:0.32
Consensus pattern (12 bp):
TAAAGTTAAGTA
Found at i:813590 original size:20 final size:20
Alignment explanation
Indices: 813565--813610 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
813555 CATTGAAGTA
* *
813565 ATACATTCATACATGTATCG
1 ATACATTCAAAAATGTATCG
*
813585 ATACATTGAAAAATGTATCG
1 ATACATTCAAAAATGTATCG
813605 ATACAT
1 ATACAT
813611 CTGGGTACTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.41, C:0.15, G:0.11, T:0.33
Consensus pattern (20 bp):
ATACATTCAAAAATGTATCG
Found at i:831762 original size:10 final size:10
Alignment explanation
Indices: 831747--831778 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
831737 AATAACTATC
831747 TTTTTTTTCT
1 TTTTTTTTCT
831757 TTTTTTTTCT
1 TTTTTTTTCT
*
831767 TTTTTTCTCT
1 TTTTTTTTCT
831777 TT
1 TT
831779 GTTTCGAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (10 bp):
TTTTTTTTCT
Found at i:831783 original size:10 final size:10
Alignment explanation
Indices: 831745--831783 Score: 53
Period size: 10 Copynumber: 4.0 Consensus size: 10
831735 CTAATAACTA
831745 TCTTTTTTT-
1 TCTTTTTTTC
*
831754 TCTTTTTTTT
1 TCTTTTTTTC
831764 TCTTTTTTTC
1 TCTTTTTTTC
*
831774 TCTTTGTTTC
1 TCTTTTTTTC
831784 GAAAATGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
9 9 0.33
10 18 0.67
ACGTcount: A:0.00, C:0.15, G:0.03, T:0.82
Consensus pattern (10 bp):
TCTTTTTTTC
Found at i:831783 original size:18 final size:18
Alignment explanation
Indices: 831748--831783 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
831738 ATAACTATCT
* *
831748 TTTTTTTCTTTTTTTTTC
1 TTTTTTTCTCTTTGTTTC
831766 TTTTTTTCTCTTTGTTTC
1 TTTTTTTCTCTTTGTTTC
831784 GAAAATGGAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.00, C:0.14, G:0.03, T:0.83
Consensus pattern (18 bp):
TTTTTTTCTCTTTGTTTC
Found at i:848024 original size:44 final size:43
Alignment explanation
Indices: 847965--848048 Score: 116
Period size: 44 Copynumber: 1.9 Consensus size: 43
847955 CATTGCACAA
* *
847965 TTGTATCGATACATGAAACTGGTAGT-AGCTACCCTACCACTAT
1 TTGTATCAATACATGAAACTGGCAGTCA-CTACCCTACCACTAT
*
848008 TTGTATCAATTACATGAAACTGGCAGTCACTACCTTACCAC
1 TTGTATCAA-TACATGAAACTGGCAGTCACTACCCTACCAC
848049 GATACTACCT
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
43 8 0.22
44 27 0.75
45 1 0.03
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (43 bp):
TTGTATCAATACATGAAACTGGCAGTCACTACCCTACCACTAT
Found at i:848057 original size:16 final size:16
Alignment explanation
Indices: 848036--848067 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
848026 ACTGGCAGTC
848036 ACTACCTTACCACGAT
1 ACTACCTTACCACGAT
848052 ACTACCTTACCACGAT
1 ACTACCTTACCACGAT
848068 TTGTATCGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.38, G:0.06, T:0.25
Consensus pattern (16 bp):
ACTACCTTACCACGAT
Found at i:848093 original size:20 final size:19
Alignment explanation
Indices: 848068--848121 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 19
848058 TTACCACGAT
848068 TTGTATCGATACATG-GCACA
1 TTGTATCGATACATGAG-A-A
848088 TTGTATCGATACATGATGAA
1 TTGTATCGATACATGA-GAA
848108 TTGTATCGATACAT
1 TTGTATCGATACAT
848122 TGCTTCAAAC
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
20 30 0.94
21 1 0.03
22 1 0.03
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (19 bp):
TTGTATCGATACATGAGAA
Found at i:854408 original size:20 final size:20
Alignment explanation
Indices: 854370--854409 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
854360 TTTCAAATTT
854370 CTTCATTTTCACTTCAAAATA
1 CTTCATTTTCAC-TCAAAATA
854391 CTTCATTTTTCA-TCAAAAT
1 CTTCA-TTTTCACTCAAAAT
854410 TATCAACATA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.39
21 5 0.28
22 6 0.33
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.45
Consensus pattern (20 bp):
CTTCATTTTCACTCAAAATA
Found at i:856099 original size:14 final size:14
Alignment explanation
Indices: 856082--856109 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
856072 AAATGTTTGA
856082 AAATAAATTTTTAT
1 AAATAAATTTTTAT
856096 AAATAAATTTTTAT
1 AAATAAATTTTTAT
856110 CAAGGGGAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
AAATAAATTTTTAT
Found at i:856142 original size:30 final size:29
Alignment explanation
Indices: 856106--856162 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 29
856096 AAATAAATTT
856106 TTATCAAGGGGAAGAAAATCTTTTAAACAA
1 TTATCAAGGGGAAG-AAATCTTTTAAACAA
* *
856136 TTATCAAGGGGGAGAAATTTTTTAAAC
1 TTATCAAGGGGAAGAAATCTTTTAAAC
856163 GAGAGCCTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 12 0.48
30 13 0.52
ACGTcount: A:0.42, C:0.09, G:0.19, T:0.30
Consensus pattern (29 bp):
TTATCAAGGGGAAGAAATCTTTTAAACAA
Found at i:856755 original size:13 final size:13
Alignment explanation
Indices: 856737--856763 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
856727 ACATTATGCT
856737 TTGTATCGATACA
1 TTGTATCGATACA
856750 TTGTATCGATACA
1 TTGTATCGATACA
856763 T
1 T
856764 GAAACTGGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:861278 original size:13 final size:13
Alignment explanation
Indices: 861260--861284 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
861250 CAATTCTTCA
861260 TGTATCGATACAT
1 TGTATCGATACAT
861273 TGTATCGATACA
1 TGTATCGATACA
861285 AGGTGCCATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:861282 original size:33 final size:32
Alignment explanation
Indices: 861240--861337 Score: 126
Period size: 33 Copynumber: 3.0 Consensus size: 32
861230 TTTTAGACAA
*
861240 TGTATCGATACAA-TTCTTCATGTATCGATACAT
1 TGTATCGATACAAGTGC--CATGTATCGATACAT
861273 TGTATCGATACAAGGTGCCATGTATCGATACAT
1 TGTATCGATACAA-GTGCCATGTATCGATACAT
* *
861306 TGTATCAATACAAGGTGCCATGTATTGATACA
1 TGTATCGATACAA-GTGCCATGTATCGATACA
861338 AATAGTGGTA
Statistics
Matches: 60, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
33 58 0.97
35 2 0.03
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (32 bp):
TGTATCGATACAAGTGCCATGTATCGATACAT
Found at i:861298 original size:20 final size:20
Alignment explanation
Indices: 861273--861338 Score: 65
Period size: 20 Copynumber: 3.6 Consensus size: 20
861263 ATCGATACAT
861273 TGTATCGATACAAGGTGCCA
1 TGTATCGATACAAGGTGCCA
861293 TGTATCGATAC-A--T----
1 TGTATCGATACAAGGTGCCA
*
861306 TGTATCAATACAAGGTGCCA
1 TGTATCGATACAAGGTGCCA
*
861326 TGTATTGATACAA
1 TGTATCGATACAA
861339 ATAGTGGTAG
Statistics
Matches: 36, Mismatches: 3, Indels: 14
0.68 0.06 0.26
Matches are distributed among these distances:
13 10 0.28
14 1 0.03
16 1 0.03
17 1 0.03
19 1 0.03
20 22 0.61
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (20 bp):
TGTATCGATACAAGGTGCCA
Found at i:861425 original size:13 final size:13
Alignment explanation
Indices: 861407--861433 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
861397 TAGAATGAAC
861407 ATGTATCGATACA
1 ATGTATCGATACA
861420 ATGTATCGATACA
1 ATGTATCGATACA
861433 A
1 A
861434 AGCATGATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:864574 original size:475 final size:474
Alignment explanation
Indices: 863684--864581 Score: 1189
Period size: 475 Copynumber: 1.9 Consensus size: 474
863674 ATGAAGGGAA
* * *
863684 TGTTACGAGAATCGATTCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAA
1 TGTTACGAGAATCGATACTTGTCTTATTTAAGGGATAAACTTTGATTTTAAGGAAAATAGGGAAA
* * * *
863749 AAAAATATTTCTATGCAAAAAAAAATTATCAATATCATTTATCCTAATGAGAAGAATTATTTATA
66 AAAAATATTTCCATGCAAAAAAAAATCATCAATATCATTTATCCTAAGGAGAAGAATTACTTATA
*
863814 GTAACTAATCACAAAATGAAGGAAGATCATTACTACAATCCATGTTTAGCTTATTTGAGGCACAA
131 GTAACTAATCACAAAATGAAGGAAGATCATTACTACAATCCATGTTTAGCTCATTTGAGGCACAA
* * * *
863879 ACTTAGACTTTACAAAAATTAGTGGGAAAAAAGTCTTTCTTGCGAAGCCAAAGCATCAATATCAT
196 ACTTAGACTTTACAAAAATTAGGGGGAAAAAAGCCTTTCTTGCGAAACCAAAACATCAATATCAT
* * ** * * *
863944 GTATACTAATGAGAACACTATGCTTATGGTGCCTAATCCAGAAAATAATGGGGATTAGTAAGTGT
261 GTATACTAATGAGAACACTATACTTATAGCACATAATCCAGAAAAGAATGAGGATTAGTAAGTGT
* * * * * *
864009 ATTTATGTTTATCTTATTTAAGAGACAAACTTTGATTTCATAAAAAACGATGGAAAGAAAAGCTT
326 ATTCATATTTATCTTACTCAAGAGACAAACTTTGATTTCATAAAAAACGATGGAAAGAAAACCCT
*
864074 TTCTTGCAACACCAAAGCATCAATGTCATGTATCTAATTGAAGGGAATGTGTTTTTGGTTCCCAA
391 TTCTTGCAACACCAAACCATCAATGTCATGTATCTAATTGAAGGGAATGTGTTTTTGGTTCCCAA
864139 TCTTGAAAAGAATGGAGAC
456 TCTTGAAAAGAATGGAGAC
*
864158 TGTTACGAGCATCGATACTTGTCTTATTTAAGGGATAAACTTTGATTTTAAGGAAAATAGGGAAA
1 TGTTACGAGAATCGATACTTGTCTTATTTAAGGGATAAACTTTGATTTTAAGGAAAATAGGGAAA
* * *
864223 AGAAAATATTTCCATGCAAAAGAAAATCATCAATATCATTTATCTTAAGGATG-AGAATGTGCTT
66 A-AAAATATTTCCATGCAAAAAAAAATCATCAATATCATTTATCCTAAGGA-GAAGAAT-TACTT
** * * * * * *
864287 ATAGTGCCTAATCACAAAATGAATGATGGTGATTGCTAGAATCCAT-TTT-GTCTCATTTGAGGC
128 ATAGTAACTAATCACAAAATGAAGGAAGATCATTACTACAATCCATGTTTAG-CTCATTTGAGGC
* *
864350 ACAAACTTAGACTTTACAAAAATTGGGGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATA
192 ACAAACTTAGACTTTACAAAAATTAGGGGGAAAAAAGCCTTTCTTGCGAAACCAAAACATCAATA
* * * * **
864415 TCATGTATCCTAATGAGAAGACTATATTTATAGCACATATTCTTGAAAAGAATGAGGATTAGT-A
257 TCATGTATACTAATGAGAACACTATACTTATAGCACATAATCCAGAAAAGAATGAGGATTAGTAA
* * * * * *
864479 TTAGTATTCATATTTGTCTTACTCAAGAGACAAACTTTG-GTTCTATGAAAAATGGTGGTAAA-A
322 GT-GTATTCATATTTATCTTACTCAAGAGACAAACTTTGATTTC-ATAAAAAACGATGG-AAAGA
* *
864542 AATCCCTTTCTTGCAA-AGCCAAACCGTCAATGTCATGTAT
384 AAACCCTTTCTTGCAACA-CCAAACCATCAATGTCATGTAT
864582 TTTCCAGTAA
Statistics
Matches: 362, Mismatches: 54, Indels: 15
0.84 0.13 0.03
Matches are distributed among these distances:
474 69 0.19
475 248 0.69
476 45 0.12
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.32
Consensus pattern (474 bp):
TGTTACGAGAATCGATACTTGTCTTATTTAAGGGATAAACTTTGATTTTAAGGAAAATAGGGAAA
AAAAATATTTCCATGCAAAAAAAAATCATCAATATCATTTATCCTAAGGAGAAGAATTACTTATA
GTAACTAATCACAAAATGAAGGAAGATCATTACTACAATCCATGTTTAGCTCATTTGAGGCACAA
ACTTAGACTTTACAAAAATTAGGGGGAAAAAAGCCTTTCTTGCGAAACCAAAACATCAATATCAT
GTATACTAATGAGAACACTATACTTATAGCACATAATCCAGAAAAGAATGAGGATTAGTAAGTGT
ATTCATATTTATCTTACTCAAGAGACAAACTTTGATTTCATAAAAAACGATGGAAAGAAAACCCT
TTCTTGCAACACCAAACCATCAATGTCATGTATCTAATTGAAGGGAATGTGTTTTTGGTTCCCAA
TCTTGAAAAGAATGGAGAC
Found at i:865840 original size:28 final size:28
Alignment explanation
Indices: 865808--865865 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
865798 AAAGCAAATC
865808 ATCAATATCATTTATCCTAAAGAGGAGA
1 ATCAATATCATTTATCCTAAAGAGGAGA
865836 ATCAATATCATTTATCCTAAAGAGGAGA
1 ATCAATATCATTTATCCTAAAGAGGAGA
865864 AT
1 AT
865866 GTGCTTATAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (28 bp):
ATCAATATCATTTATCCTAAAGAGGAGA
Found at i:869446 original size:14 final size:15
Alignment explanation
Indices: 869423--869452 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
869413 AATAAATTTG
869423 AAAAAGGGGAGAGAT
1 AAAAAGGGGAGAGAT
869438 AAAAA-GGGAGAGAT
1 AAAAAGGGGAGAGAT
869452 A
1 A
869453 TTTTGAAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.57, C:0.00, G:0.37, T:0.07
Consensus pattern (15 bp):
AAAAAGGGGAGAGAT
Found at i:869485 original size:14 final size:15
Alignment explanation
Indices: 869446--869475 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
869436 ATAAAAAGGG
869446 AGAGATA-TTTTGAA
1 AGAGATATTTTTGAA
869460 AGAGATATTTTTGAA
1 AGAGATATTTTTGAA
869475 A
1 A
869476 TAATTTTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.43, C:0.00, G:0.20, T:0.37
Consensus pattern (15 bp):
AGAGATATTTTTGAA
Found at i:870262 original size:13 final size:13
Alignment explanation
Indices: 870244--870268 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
870234 CATATTGCTT
870244 TGTATCGATACAA
1 TGTATCGATACAA
870257 TGTATCGATACA
1 TGTATCGATACA
870269 TGTTCTTGGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:870286 original size:32 final size:33
Alignment explanation
Indices: 870224--870287 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 33
870214 CACACCTAGG
*
870224 TGTATCGATACATATTGCTTTGTATCGATACAA
1 TGTATCGATACATATTGCTTGGTATCGATACAA
*
870257 TGTATCGATACATGTT-CTTGGTATCGATACA
1 TGTATCGATACATATTGCTTGGTATCGATACA
870288 TGAAACTAGC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 14 0.48
33 15 0.52
ACGTcount: A:0.28, C:0.16, G:0.17, T:0.39
Consensus pattern (33 bp):
TGTATCGATACATATTGCTTGGTATCGATACAA
Found at i:871825 original size:21 final size:21
Alignment explanation
Indices: 871799--871841 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
871789 GAGTTTGCAT
871799 AAAATTCGTATTAAAGAGGAG
1 AAAATTCGTATTAAAGAGGAG
* *
871820 AAAATTTGTATTAAAGGGGAG
1 AAAATTCGTATTAAAGAGGAG
871841 A
1 A
871842 CCTTGCATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.47, C:0.02, G:0.26, T:0.26
Consensus pattern (21 bp):
AAAATTCGTATTAAAGAGGAG
Found at i:872547 original size:20 final size:21
Alignment explanation
Indices: 872508--872551 Score: 72
Period size: 22 Copynumber: 2.1 Consensus size: 21
872498 TTAAGTGTAG
872508 ATGTTTTTCAAGCATAAAAATA
1 ATGTTTTTCAAG-ATAAAAATA
872530 ATGTTTTTCAAG-TAAAAATA
1 ATGTTTTTCAAGATAAAAATA
872550 AT
1 AT
872552 TCAAAGTATC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 10 0.45
22 12 0.55
ACGTcount: A:0.45, C:0.07, G:0.09, T:0.39
Consensus pattern (21 bp):
ATGTTTTTCAAGATAAAAATA
Found at i:873284 original size:35 final size:36
Alignment explanation
Indices: 873217--873285 Score: 104
Period size: 36 Copynumber: 1.9 Consensus size: 36
873207 AGTGATTGAG
** *
873217 AGGTTCTATCTTAGCCTTTGAAAAAGATAGGGAGAA
1 AGGTTCTATCTTAGCCCGTGAAAAAGAAAGGGAGAA
873253 AGGTTCTATCTTAGCCCGTG-AAAAGAAAGGGAG
1 AGGTTCTATCTTAGCCCGTGAAAAAGAAAGGGAG
873286 GTTTCTATCT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
35 12 0.40
36 18 0.60
ACGTcount: A:0.35, C:0.13, G:0.28, T:0.25
Consensus pattern (36 bp):
AGGTTCTATCTTAGCCCGTGAAAAAGAAAGGGAGAA
Found at i:873297 original size:32 final size:32
Alignment explanation
Indices: 873216--873297 Score: 85
Period size: 36 Copynumber: 2.4 Consensus size: 32
873206 AAGTGATTGA
** *
873216 GAGGTTCTATCTTAGCCTTTGAAAAAGATAGGG
1 GAGGTTCTATCTTAGCCCGTGAAAAAGA-AAGG
873249 AGAAAGGTTCTATCTTAGCCCGTG-AAAAGAAAGG
1 -G--AGGTTCTATCTTAGCCCGTGAAAAAGAAAGG
873283 GAGGTTTCTATCTTA
1 GAGG-TTCTATCTTA
873298 ACCTTGAACG
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
31 3 0.07
32 10 0.24
33 1 0.02
34 4 0.10
35 6 0.14
36 18 0.43
ACGTcount: A:0.32, C:0.13, G:0.26, T:0.29
Consensus pattern (32 bp):
GAGGTTCTATCTTAGCCCGTGAAAAAGAAAGG
Found at i:874660 original size:475 final size:470
Alignment explanation
Indices: 873565--875797 Score: 2512
Period size: 475 Copynumber: 4.8 Consensus size: 470
873555 TAACATAAGG
* * *
873565 CAAAGGAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATA-AGGAGAATGTG
1 CAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAACATCATTTATCCTAA-AGAGGAGAATGTG
* * *
873629 CTTATAGTGCCTAATCACATAATGAATGAAGATCATTACTAGAATCCAAGATTGTCTCATTTGAG
65 CTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAG
* * * *
873694 GCACGAACATAGAATTAACAAAAATTGGTGGGAAAAATGCCTTTCTTGCAAAACCAAAGCATCAA
130 ACATGAACATAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTG-AAAACCAAAGCATCAA
* * * * * * *
873759 TACCATGTATCCTAATGAGAAGACTATGTTTATGGTGCTTAATCTTGATAAGAATAGGGATTAGT
194 TATCGTGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAAT-GGGATTAAT
* * * *
873824 ATTAGTATTAAGGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAA
258 ATCAGTATTTAGGTTTGTCTTATTTAAGAGACAAACTATGATTCTATCAAAAACGGTGGAAAAAA
* * **
873889 AAGCTTTTCTTGTGACACCAAAGCATCAATATCATGTATCCTAACGAAGGGAATGTGTTTCGGTT
323 AAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGTT
* * * * * * ** * *
873954 CCCAAT-TTGGAAAAGAATGGA-AACTGTTATGAGGATTGATG-TGT-GTCTT----G--AACTT
388 TCCAATCTT-GAAAATAACGGAGAA-TGTAACGAGAATCAATGCTGTCTTATTAAGGGATAACTT
*
874009 TATTTTTAAGGAAAATAGGA
451 TGTTTTTAAGGAAAATAGGA
* * * *
874029 CAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATTCTAAAAAAGAGAATGTGC
1 CAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAACATCATTTATCCTAAAGAGGAGAATGTGC
* * * *
874094 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTAGTGGAATCTATGTTTGTCTCATTTAAGA
66 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGA
* *
874159 CATGAACATGGACTTTACAAAAATTGGTGAGAAAAATGCCTTTCTTGCAAAACCAAAGCATCAAT
131 CATGAACATAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTG-AAAACCAAAGCATCAAT
** * *
874224 ATTC-TGTATCCTAATGAGAAAACTATGTTTATGGTGAGTAATCTTGATAAGAATAGGGATTAAT
195 A-TCGTGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAAT-GGGATTAAT
874288 ATCAGTATTTAGGTTTGTCTTATTTAAGAGACAAACTATGATTC-ATCAAAAACGGT-GAAAAGA
258 ATCAGTATTTAGGTTTGTCTTATTTAAGAGACAAACTATGATTCTATCAAAAACGGTGGAAAA-A
* *
874351 AAAGCTTTTCTTGTGACACCAAATCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTCGA
322 AAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAG-
* * * *
874416 TTTCCAATCTAGAAAAGAATGGAGAATGCAACGAGAATCAATGCCTGTCTTAGTTAAGGGATAAA
386 TTTCCAATCTTGAAAATAACGGAGAATGTAACGAGAATCAATG-CTGTCTTA-TTAAGGGAT-AA
*
874481 CTTTGTTTTTAAGGAAAACAGGA
448 CTTTGTTTTTAAGGAAAATAGGA
874504 CAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAACATCATTTATCCTAAAGAGGAGAATGTGC
1 CAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAACATCATTTATCCTAAAGAGGAGAATGTGC
**
874569 TTATAGTGCCTAATCACAAAATGAAT-AAGGATCATTACTAGAATCCATGTTTGTCAAATTTGAG
66 TTATAGTGCCTAATCACAAAATGAATGAA-GATCATTACTAGAATCCATGTTTGTCTCATTTGAG
* * * *
874633 GCATGAGCATGGACTTTACAGAAATTGGTGGGAAAAATGCCTTTCTTGGAAAACCAAAGCATCAA
130 ACATGAACATAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTT-GAAAACCAAAGCATCAA
* * * * *
874698 TATCGTGTATCCTAATGAGAAGACCATGTTTATGGTGCCTAATCCTGAAAAAAAGGGGGATTAGT
194 TATCGTGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAA-TGGGATTAAT
* * * ** * * * *
874763 ATGACTATTAATATTTGTCTTATTTAAGAGACAAACTTTAATTTTATCAACAACGGTGGAAAAAA
258 ATCAGTATTTAGGTTTGTCTTATTTAAGAGACAAACTATGATTCTATCAAAAACGGTGGAAAAAA
* ** *
874828 TAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAAAATGTGTTTTAGGT
323 AAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGTT
*
874893 TCCTAATCTTGAAAATAACGGAGAATGTTAA-GAGCATCAA---TG-C---TT----G-T--C--
388 TCC-AATCTTGAAAATAACGGAGAATG-TAACGAGAATCAATGCTGTCTTATTAAGGGATAACTT
* *
874941 T-TCTTTAAGGAAAATAGGG
451 TGTTTTTAAGGAAAATAGGA
* * *
874960 CAAAGAAAAGATTTCCATAG-AAAAGAAAATCATCAATATCATTTATCCTAATGA-GAGGAATGT
1 CAAAGAAAAGATTTTCAT-GCAAAAGAAAATCATCAACATCATTTATCCTAAAGAGGA-GAATGT
* *
875023 GTTTACAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA
64 GCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA
* ** * * *
875088 GGCACAAATATAGACTTTACAAAAATTGGTGGGAAAAATGCCTTCCTTGTAAAACTAAAGCATCA
129 GACATGAACATAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTG-AAAACCAAAGCATCA
* * * * *
875153 ATATCATGTATCCTAATGAGAATACTATGTTTAAGGTGCCTAATCCTGATAAGAATGGGTATTAG
193 ATATCGTGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGG-ATTAA
* * * * ** *
875218 TAACAGTATTTAGGTTTGTTTTATTTAAGAGAGAAACTTTGATTCTATCAAAAATAGTGGAAAGA
257 TATCAGTATTTAGGTTTGTCTTATTTAAGAGACAAACTATGATTCTATCAAAAACGGTGGAAAAA
* * * *
875283 AAATCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATTCTAATTAAGGGAATGTGTTTTAGG
322 AAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTA-G
* * * * * *
875348 TTCCCAATCTTGAAAATAACGGAGACTATTACGAGAATCGATGCTTATCTTATTTAAGGGATGAA
386 TTTCCAATCTTGAAAATAACGGAGAATGTAACGAGAATCAATGC-TGTCTTA-TTAAGGGAT-AA
* *
875413 CTTTGATTTT-AGGAAAATAGGG
448 CTTTGTTTTTAAGGAAAATAGGA
* * * * *
875435 CTAAGAAAATATTTTCATGCAAAAGAATATCATCAACATCATTTATCCTAATGAGGAGAATGTGT
1 CAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAACATCATTTATCCTAAAGAGGAGAATGTGC
* * * * * * *
875500 TTAAAGTGCCAAATCACAAAAGGAAGGATGATCGTTACTAGAATCAATGTTTGTCTCATTTGAGA
66 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGA
* *** * ** **
875565 CATGAACTTAGACTTTGA-AAAAATTTAAGGGAAAAAAGCCTTTCTTGTGAACCAAAATATCAAT
131 CATGAACATAGACTTT-ACAAAAATTGGTGGGAAAAATGCCTTTCTTGAAAACCAAAGCATCAAT
* *
875629 ATCGTGTATCCTAATGA-AAAGATTATGTTTATGGTGCCTAATCTTGAAAAGAATGGCGATTAAT
195 ATCGTGTATCCTAATGAGAAA-ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGG-GATTAAT
* * * * * * * *
875693 ATGAGTATTCATGTTTGTCTTATTTAAAAGACAAAC-ATTGATTCTATGAAAGATGGTGGTAAAA
258 ATCAGTATTTAGGTTTGTCTTATTTAAGAGACAAACTA-TGATTCTATCAAAAACGGTGGAAAAA
* * * * *
875757 AAACCCTTTCTTAT-AAAGCCAAACCATCAATGTCATGTATC
322 AAAGCTTTTCTTGTGACA-CCAAAGCATCAATGTCATGTATC
875798 TCAATAAGGA
Statistics
Matches: 1514, Mismatches: 196, Indels: 108
0.83 0.11 0.06
Matches are distributed among these distances:
455 8 0.01
456 372 0.25
457 8 0.01
459 1 0.00
460 1 0.00
461 1 0.00
462 5 0.00
463 74 0.05
464 304 0.20
465 6 0.00
466 3 0.00
467 3 0.00
468 2 0.00
469 1 0.00
470 1 0.00
471 1 0.00
472 3 0.00
473 5 0.00
474 150 0.10
475 452 0.30
476 106 0.07
477 7 0.00
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.31
Consensus pattern (470 bp):
CAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAACATCATTTATCCTAAAGAGGAGAATGTGC
TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGA
CATGAACATAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGAAAACCAAAGCATCAATA
TCGTGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGATTAATATC
AGTATTTAGGTTTGTCTTATTTAAGAGACAAACTATGATTCTATCAAAAACGGTGGAAAAAAAAG
CTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGTTTCC
AATCTTGAAAATAACGGAGAATGTAACGAGAATCAATGCTGTCTTATTAAGGGATAACTTTGTTT
TTAAGGAAAATAGGA
Found at i:875478 original size:931 final size:929
Alignment explanation
Indices: 873565--875797 Score: 2912
Period size: 931 Copynumber: 2.4 Consensus size: 929
873555 TAACATAAGG
* * *
873565 CAAAGGAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATA-AGGAGAATGTG
1 CAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAACATCATTTATCCTAA-AGAGGAGAATGTG
* * *
873629 CTTATAGTGCCTAATCACATAATGAATGAAGATCATTACTAGAATCCAAGATTGTCTCATTTGAG
65 CTTATAGTGCCTAATCACAAAATGAAT-AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAG
* * * *
873694 GCACGAACATAGAATTAACAAAAATTGGTGGGAAAAATGCCTTTCTTGCAAAACCAAAGCATCAA
129 GCATGAACATAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGGAAAACCAAAGCATCAA
* * * * *
873759 TACCATGTATCCTAATGAGAAGACTATGTTTATGGTGCTTAATCTTGATAAGAATAGGGATTAGT
194 TATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGT
* *
873824 ATTAGTATTAAGGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAA
259 ATGAGTATTAATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC-AAAACGGTGGAAA-AA
* ** *
873889 AAGCTTTTCTTGTGACACCAAAGCATCAATATCATGTATCCTAACGAAGGGAATGTGTTTCGGTT
322 AAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAACGAAGAAAATGTGTTTAGGTT
* * * **
873954 CCCAATTTGGAAAAGAATGGAAACTGTTATGAGGATTGATGTGTGTCTTGAACTTTATTTTTAAG
387 CCCAATTTGGAAAAGAACGGAAACTGTTAAGAGCATCAATGTGTGTCTT--AC-----TTTTAAG
* *
874019 GAAAATAGGACAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATTCTAAAAAA
445 GAAAATAGGACAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAAAAA
* * * *
874084 GAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAGTGGAATCTATGTTTGTC
510 GAGAATGTGCTTACAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTC
** * *
874149 TCATTTAAGACATGAACATGGACTTTACAAAAATTGGTGAGAAAAATGCCTTTCTTGCAAAACCA
575 TCATTTAAGACACAAACATAGACTTTACAAAAATTGGTGAGAAAAATGCCTTCCTTGCAAAACCA
* * *
874214 AAGCATCAATATTCTGTATCCTAATGAGAAAACTATGTTTATGGTGAGTAATCTTGATAAGAATA
640 AAGCATCAATATTCTGTATCCTAATGAGAAAACTATGTTTAAGGTGACTAATCCTGATAAGAATA
* *
874279 GGGATTAATATCAGTATTTAGGTTTGTCTTATTTAAGAGACAAACTATGATTCATCAAAAACGGT
705 GGGATTAATAACAGTATTTAGGTTTGTCTTATTTAAGAGACAAACTATGATTCATCAAAAACAGT
* *
874344 GAAAAGAAAAGCTTTTCTTGTGACACCAAATCATCAATGTCATGTATCCTAATGAAGGGAATGTG
770 GAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG
* * * * *
874409 TTTTCGATTTCCAATCTAGAAAAGAATGGAGAATGCAACGAGAATCAATGCCTGTCTTAGTTAAG
835 TTTTAGATTCCCAATCTAGAAAAGAACGGAGAATACAACGAGAATCAATGCCTATCTTAGTTAAG
*
874474 GGATAAACTTTGTTTTTAAGGAAAACAGGA
900 GGATAAACTTTGATTTTAAGGAAAACAGGA
874504 CAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAACATCATTTATCCTAAAGAGGAGAATGTGC
1 CAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAACATCATTTATCCTAAAGAGGAGAATGTGC
**
874569 TTATAGTGCCTAATCACAAAATGAATAAGGATCATTACTAGAATCCATGTTTGTCAAATTTGAGG
66 TTATAGTGCCTAATCACAAAATGAATAA-GATCATTACTAGAATCCATGTTTGTCTCATTTGAGG
* * *
874634 CATGAGCATGGACTTTACAGAAATTGGTGGGAAAAATGCCTTTCTTGGAAAACCAAAGCATCAAT
130 CATGAACATAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGGAAAACCAAAGCATCAAT
* * * *
874699 ATCGTGTATCCTAATGAGAAGACCATGTTTATGGTGCCTAATCCTGAAAAAAAGGGGGATTAGTA
195 ATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTA
* * * *
874764 TGACTATTAATATTTGTCTTATTTAAGAGACAAACTTTAATTTTATCAACAACGGTGGAAAAAAT
260 TGAGTATTAATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAA-AACGGTGGAAAAAA-
*
874829 AGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAAAATGTGTTTTAGGTT
323 AGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAACGAAGAAAATGTG-TTTAGGTT
* *
874894 CCTAATCTT-GAAAATAACGGAGAA-TGTTAAGAGCATCAATGCT-TGTCTT-C-TTTAAGGAAA
387 CCCAAT-TTGGAAAAGAACGGA-AACTGTTAAGAGCATCAATG-TGTGTCTTACTTTTAAGGAAA
* **
874954 ATAGGGCAAAGAAAAGATTTCCATAG-AAAAGAAAATCATCAATATCATTTATCCT-AATGAGAG
449 ATAGGACAAAGAAAAGATTTCCAT-GCAAAAGAAAATCATCAATATCATTTATCCTAAAAAAGA-
*
875017 GAATGTGTTTACAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTC
512 GAATGTGCTTACAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTC
* * * * * *
875082 ATTTGAGGCACAAATATAGACTTTACAAAAATTGGTGGGAAAAATGCCTTCCTTGTAAAACTAAA
577 ATTTAAGACACAAACATAGACTTTACAAAAATTGGTGAGAAAAATGCCTTCCTTGCAAAACCAAA
* *
875147 GCATCAATA-TCATGTATCCTAATGAGAATACTATGTTTAAGGTGCCTAATCCTGATAAGAAT-G
642 GCATCAATATTC-TGTATCCTAATGAGAAAACTATGTTTAAGGTGACTAATCCTGATAAGAATAG
* * * * *
875210 GGTATTAGTAACAGTATTTAGGTTTGTTTTATTTAAGAGAGAAACTTTGATTCTATCAAAAATAG
706 GG-ATTAATAACAGTATTTAGGTTTGTCTTATTTAAGAGACAAACTATGATTC-ATCAAAAACAG
* * * *
875275 TGGAAAGAAAATCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATTCTAATTAAGGGAATGT
769 TGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGT
* * * * ** * * *
875340 GTTTTAGGTTCCCAATCTTGAAAATAACGGAGACTATTACGAGAATCGATGCTTATCTTATTTAA
834 GTTTTAGATTCCCAATCTAGAAAAGAACGGAGAATACAACGAGAATCAATGCCTATCTTAGTTAA
* * *
875405 GGGATGAACTTTGATTTT-AGGAAAATAGGG
899 GGGATAAACTTTGATTTTAAGGAAAACAGGA
* * * * *
875435 CTAAGAAAATATTTTCATGCAAAAGAATATCATCAACATCATTTATCCTAATGAGGAGAATGTGT
1 CAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAACATCATTTATCCTAAAGAGGAGAATGTGC
* * * * * * * *
875500 TTAAAGTGCCAAATCACAAAAGGAAGGATGATCGTTACTAGAATCAATGTTTGTCTCATTTGAGA
66 TTATAGTGCCTAATCACAAAATGAA-TAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGG
* *** * **
875565 CATGAACTTAGACTTTGA-AAAAATTTAAGGGAAAAAAGCCTTTCTTGTG--AACCAAAATATCA
130 CATGAACATAGACTTT-ACAAAAATTGGTGGGAAAAATGCCTTTCTTG-GAAAACCAAAGCATCA
* * * *
875627 ATATCGTGTATCCTAATGAAAAGATTATGTTTATGGTGCCTAATCTTGAAAAGAATGGCGATTAA
193 ATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAG
* * * * *
875692 TATGAGTATTCATGTTTGTCTTATTTAAAAGACAAACATTGATTCTATGAAAGATGGTGGTAAAA
258 TATGAGTATTAATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAA-ACGGTGG-AAAA
* * * * *
875757 AAACCCTTTCTTAT-AAAGCCAAACCATCAATGTCATGTATC
321 AAAGCTTTTCTTGTGACA-CCAAAGCATCAATGTCATGTATC
875798 TCAATAAGGA
Statistics
Matches: 1130, Mismatches: 145, Indels: 47
0.85 0.11 0.04
Matches are distributed among these distances:
929 3 0.00
930 158 0.14
931 440 0.39
932 139 0.12
937 1 0.00
938 8 0.01
939 335 0.30
940 41 0.04
941 5 0.00
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.31
Consensus pattern (929 bp):
CAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAACATCATTTATCCTAAAGAGGAGAATGTGC
TTATAGTGCCTAATCACAAAATGAATAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGC
ATGAACATAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGGAAAACCAAAGCATCAATA
TCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTAT
GAGTATTAATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAACGGTGGAAAAAAAGC
TTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAACGAAGAAAATGTGTTTAGGTTCCCA
ATTTGGAAAAGAACGGAAACTGTTAAGAGCATCAATGTGTGTCTTACTTTTAAGGAAAATAGGAC
AAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAAAAAGAGAATGTGCT
TACAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGAC
ACAAACATAGACTTTACAAAAATTGGTGAGAAAAATGCCTTCCTTGCAAAACCAAAGCATCAATA
TTCTGTATCCTAATGAGAAAACTATGTTTAAGGTGACTAATCCTGATAAGAATAGGGATTAATAA
CAGTATTTAGGTTTGTCTTATTTAAGAGACAAACTATGATTCATCAAAAACAGTGAAAAGAAAAG
CTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGATTCC
CAATCTAGAAAAGAACGGAGAATACAACGAGAATCAATGCCTATCTTAGTTAAGGGATAAACTTT
GATTTTAAGGAAAACAGGA
Found at i:875941 original size:475 final size:474
Alignment explanation
Indices: 874951--875907 Score: 1093
Period size: 475 Copynumber: 2.0 Consensus size: 474
874941 TTCTTTAAGG
* * * * *
874951 AAAATAGGGCAAAGAAAAGATTTCCATA-GAAAAGAAAATCATCAATATCATTTATCCTAATGAG
1 AAAATAGGGCAAAGAAAATATTTTCA-ACCAAAAGAATATCATCAACATCATTTATCCTAATGAG
* * * * *
875015 AGGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTC
65 AGGAATGTGTTTAAAGTGCCAAATCACAAAAGGAAGGAAGATCATTACTAGAATCAATGTTTGTC
* ** * *
875080 TCATTTGAGGCACAAATATAGACTTTACAAAAATTGGTGGGAAAAATGCCTTCCTTGTAAAACTA
130 TCATTTGAGACACAAATATAGACTTTACAAAAATTGAAGGGAAAAAAGCCTTCCTTGTAAAACCA
* * * *
875145 AAGCATCAATATCATGTATCCTAATGAGAATACTATGTTTAAGGTGCCTAATCCTGATAAGAATG
195 AAACATCAATATCATGTATCCTAATGAAAAGACTATGTTTAAGGTGCCTAATCCTGAAAAGAATG
* * * * * *
875210 GGTATTAGTAACAGTATTTAGGTTTGTTTTATTTAAGAGAGAAACTTTGATTCTATCAAAAATAG
260 GGTATTAATAACAGTATTCAGGTTTGTCTTATTTAAAAGACAAACATTGATTCTATCAAAAATAG
* * * * *
875275 TGGAAAGAAAATCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATTCTAATTAAGGGAATGT
325 TGGAAAGAAAACCCTTTCTTGAGAAACCAAACCATCAATGTCATGTATTCTAATTAAGGGAA-GT
* * *
875340 GTTTTAGGTTCCCAATCTTGAAAATAACGGAGACTATTACGAGAATCGATGCTTATCTTATTTAA
389 GTTTTAGGTGCCCAATCTTGAAAAGAACGGAGACTATTACGAGAATCGATGCTTATCTCATTTAA
* * *
875405 GGGATGAACTTTGATTTTAGG
454 GGAATGAACATTGATTTTAGC
* **
875426 AAAATAGGGCTAAGAAAATATTTTCATGCAAAAGAATATCATCAACATCATTTATCCTAATGAG-
1 AAAATAGGGCAAAGAAAATATTTTCAACCAAAAGAATATCATCAACATCATTTATCCTAATGAGA
* *
875490 GAGAATGTGTTTAAAGTGCCAAATCACAAAAGGAAGGATGATCGTTACTAGAATCAATGTTTGTC
66 G-GAATGTGTTTAAAGTGCCAAATCACAAAAGGAAGGAAGATCATTACTAGAATCAATGTTTGTC
* * * * *
875555 TCATTTGAGACATGAACT-TAGACTTTGA-AAAAATTTAAGGGAAAAAAGCCTTTCTTGT-GAAC
130 TCATTTGAGACA-CAAATATAGACTTT-ACAAAAATTGAAGGGAAAAAAGCCTTCCTTGTAAAAC
* * * * *
875617 CAAAATATCAATATCGTGTATCCTAATGAAAAGATTATGTTTATGGTGCCTAATCTTGAAAAGAA
193 CAAAACATCAATATCATGTATCCTAATGAAAAGACTATGTTTAAGGTGCCTAATCCTGAAAAGAA
** * * *
875682 TGGCG-ATTAATATGAGTATTCATGTTTGTCTTATTTAAAAGACAAACATTGATTCTATGAAAGA
258 TGG-GTATTAATAACAGTATTCAGGTTTGTCTTATTTAAAAGACAAACATTGATTCTATCAAAAA
* *
875746 TGGTGGTAAA-AAAACCCTTTCTT-ATAAAGCCAAACCATCAATGTCATGTA-TCTCAA-TAA-G
322 TAGTGG-AAAGAAAACCCTTTCTTGAGAAA-CCAAACCATCAATGTCATGTATTCT-AATTAAGG
* * * * ** *
875806 G-A-T-TTTT-GGTGCCTAATCTTG-AAAGAATGGAG-CTATTACTAGAGTTTATGTTTATCTCA
384 GAAGTGTTTTAGGTGCCCAATCTTGAAAAGAACGGAGACTATTACGAGAATCGATGCTTATCTCA
*
875865 TTTGAGGAATGAACATTGATTTATAGC
449 TTTAAGGAATGAACATTGATTT-TAGC
* *
875892 AAAATATGTCAAAGAA
1 AAAATAGGGCAAAGAA
875908 GAGCTTTTCT
Statistics
Matches: 405, Mismatches: 68, Indels: 27
0.81 0.14 0.05
Matches are distributed among these distances:
465 40 0.10
466 25 0.06
467 12 0.03
468 4 0.01
469 1 0.00
471 1 0.00
472 2 0.00
473 8 0.02
474 148 0.37
475 160 0.40
476 4 0.01
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.32
Consensus pattern (474 bp):
AAAATAGGGCAAAGAAAATATTTTCAACCAAAAGAATATCATCAACATCATTTATCCTAATGAGA
GGAATGTGTTTAAAGTGCCAAATCACAAAAGGAAGGAAGATCATTACTAGAATCAATGTTTGTCT
CATTTGAGACACAAATATAGACTTTACAAAAATTGAAGGGAAAAAAGCCTTCCTTGTAAAACCAA
AACATCAATATCATGTATCCTAATGAAAAGACTATGTTTAAGGTGCCTAATCCTGAAAAGAATGG
GTATTAATAACAGTATTCAGGTTTGTCTTATTTAAAAGACAAACATTGATTCTATCAAAAATAGT
GGAAAGAAAACCCTTTCTTGAGAAACCAAACCATCAATGTCATGTATTCTAATTAAGGGAAGTGT
TTTAGGTGCCCAATCTTGAAAAGAACGGAGACTATTACGAGAATCGATGCTTATCTCATTTAAGG
AATGAACATTGATTTTAGC
Found at i:879112 original size:472 final size:469
Alignment explanation
Indices: 878240--879874 Score: 2080
Period size: 472 Copynumber: 3.5 Consensus size: 469
878230 GCAGACTGTA
* * *
878240 TTTATGGTGCCTAATCCTGAAAAGAATAGAGATTAGTATGACTATTCATGTTTATATTATTTAAG
1 TTTATGGTGCCTAATCCTGAAAAAAATAGGGATTAGTATGACTATTCATGTTTATCTTATTTAAG
* * *
878305 AGACAAACTTTGATTTTACCAAAAATGATGGAAAGAAAACCTTTTCTTGCGATACGAAAGCATCA
66 AGACAAACTTTGATTCTACAAAAAATGATGGAAAGAAAACCTTTTCTTGCAATACGAAAGCATCA
* * * * *
878370 ACGTCATGTATTCTAATAAAAAGAATGTGTTTTTGGTTTCGAATCTTGAAAGAATGGAGACTGTT
131 ATGTCATGTATCCTAATAAAGAGAATGTGTTTTTGGTTCCCAATCTTGAAA-AATGGAGACTGTT
* * *
878435 ATGCGAATCAAGGCTTGCCTTATTTAAGGGATAAACTTTAATTTTAAGG-AATAGGGCAAAGAAA
195 ATGAGAATCAAGCCTTGCCTTATTTAAGGGATAAACTTTGATTTTAAGGAAATAGGGCAAAGAAA
* * *
878499 AGATTTCTGCGTAAAAGAAAATCATCAAAATCATTTATCCTAATGAGGAGAATGTGTTTACAGTG
260 AGATTTCCGTGCAAAAGAAAATCATC--AATCATTTATCCTAATGAGGAGAATGTGTTTACAGTG
878564 CCTAATCACAAAATGGAAGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACT
323 CCTAATCACAAAATGGAAGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACT
* * * * * * *
878629 TAGACTTTACAAAAATTGGTGAGAAGAAAGACTTTCTTATGAAACCAAAGCATCAATATTGTGTT
388 TAGAATTTACAAAAATTGGTG-GAAGAAAGCCTTTCTT-CGAAACCAAAGCGTTAATATCGTGTA
*
878694 TCCTTATGAGTAAACTACG
451 TCCTTATGAGTAAACTATG
* *
878713 TTTATGGTGCCTAATCCTGAAAAAAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAG
1 TTTATGGTGCCTAATCCTGAAAAAAATAGGGATTAGTATGACTATTCATGTTTATCTTATTTAAG
* * * * *
878778 AGACAAACTTTGATTCTACCAAAAACGAAGGAAATAAAATCTTTTCTTGCAATACGAAAGCATCA
66 AGACAAACTTTGATTCTACAAAAAATGATGGAAAGAAAACCTTTTCTTGCAATACGAAAGCATCA
* * *
878843 ATGTCATGTATCCCAATAAAGGGAATGTG-TTTGGGTTCCCAATCTTGACAAAATGGAGACTGTT
131 ATGTCATGTATCCTAATAAAGAGAATGTGTTTTTGGTTCCCAATCTTGA-AAAATGGAGACTGTT
* *
878907 ATGAGAATCAAGCCTTGCCTTATTTAAGGGATGAATTTTGATTTTAAGGAAATAGGGCAAAGAAA
195 ATGAGAATCAAGCCTTGCCTTATTTAAGGGATAAACTTTGATTTTAAGGAAATAGGGCAAAGAAA
*
878972 AGATTTCCGTGCAAAAGAAAATCATCAATTCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
260 AGATTTCCGTGCAAAAGAAAATCATCAA-TCATTTATCCTAATGAGGAGAATGTGTTTACAGTGC
* *
879037 CTAATCACAAAATGGAAGAAGATCATTACTAGAATCCATGTTTGTCCCATTTGAGGCACAAACTT
324 CTAATCACAAAATGGAAGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTT
* * *
879102 AGAATTTACAAAAATTGGTGGGAAGAAAGCCATTATC-GCGAAACTAAAACGTTAATATCGTGTA
389 AGAATTTACAAAAATTGGT-GGAAGAAAGCC-TT-TCTTCGAAACCAAAGCGTTAATATCGTGTA
* *
879166 T-CTTATGAGCAAACTGTG
451 TCCTTATGAGTAAACTATG
* *
879184 TTTATGGTGCCTAATCCTGAAAAAAATAGGGATAAGTATGACTATTTATGTTTATCTTATTTAAG
1 TTTATGGTGCCTAATCCTGAAAAAAATAGGGATTAGTATGACTATTCATGTTTATCTTATTTAAG
* * * **
879249 AGACAAACTTTTATTCTATAAAAAATGATGTAAAGAAAACCTTTTCTTGGGATACGAAAGCATCA
66 AGACAAACTTTGATTCTACAAAAAATGATGGAAAGAAAACCTTTTCTTGCAATACGAAAGCATCA
**
879314 ATGTCATGTATCCTAATAAAGAGAATGTGTTTTTGGTTCCCAATCTTGATTGAATGGAGACTGTT
131 ATGTCATGTATCCTAATAAAGAGAATGTGTTTTTGGTTCCCAATCTTGA-AAAATGGAGACTGTT
* *
879379 ATGAGAATCAATCCTTGCCTTATTTAAGGGATAAATTTTGATTTTAAGGAAATAGGGCAAAG-AA
195 ATGAGAATCAAGCCTTGCCTTATTTAAGGGATAAACTTTGATTTTAAGGAAATAGGGCAAAGAAA
* * *
879443 A-A--T-CAT-C--------A--AT--ATCATTTATCGTAATGAGGAGAATGTGTTTAGAGTGCC
260 AGATTTCCGTGCAAAAGAAAATCATCAATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCC
* *
879491 TAATCACAAAATGGAAGAAAATCATTACTAGAATCCCTGTTTGTCTCATTTGAGGCACGAACTTA
325 TAATCACAAAATGGAAGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTA
* * * *
879556 GATTTTGCAAAAATTGGTGGAAAAAAGCCTTTC-TGGCACAACCAAAGCGTTAATATCGTGTATC
390 GAATTTACAAAAATTGGTGGAAGAAAGCCTTTCTTCG-A-AACCAAAGCGTTAATATCGTGTATC
* * *
879620 CTTGTGAATAGACTATG
453 CTTATGAGTAAACTATG
* * * * * * * * *
879637 TTTGTGGTGCATAATCATGAAAAGAAT-GGGTTTAGTATAATTATTTATGTTTGTCTTATTTAAG
1 TTTATGGTGCCTAATCCTGAAAAAAATAGGGATTAGTATGACTATTCATGTTTATCTTATTTAAG
* * * * * * * * *
879701 ACACAAACTTTAATTCTAAAAAAAATGGTGGAAAGAAAACCCTTTCATGCAACACCAAAGCAACA
66 AGACAAACTTTGATTCTACAAAAAATGATGGAAAGAAAACCTTTTCTTGCAATACGAAAGCATCA
** * *
879766 ATGTCATGTATCCTAACGAAGAGAATGTGCTTTTGGTTCCCAATATTGAAAAAAATGGAGACTGT
131 ATGTCATGTATCCTAATAAAGAGAATGTGTTTTTGGTTCCCAATCTTG--AAAAATGGAGACTGT
* * ** *
879831 TA-CATGAATCAATG-CTTTCCTTATTTAAAAGATGAACTTTGATT
194 TATGA-GAATCAA-GCCTTGCCTTATTTAAGGGATAAACTTTGATT
879875 GTTAGGATAT
Statistics
Matches: 1030, Mismatches: 118, Indels: 48
0.86 0.10 0.04
Matches are distributed among these distances:
450 3 0.00
451 3 0.00
452 162 0.16
453 193 0.19
454 2 0.00
456 2 0.00
458 1 0.00
466 1 0.00
467 2 0.00
468 1 0.00
470 1 0.00
471 162 0.16
472 309 0.30
473 186 0.18
474 2 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (469 bp):
TTTATGGTGCCTAATCCTGAAAAAAATAGGGATTAGTATGACTATTCATGTTTATCTTATTTAAG
AGACAAACTTTGATTCTACAAAAAATGATGGAAAGAAAACCTTTTCTTGCAATACGAAAGCATCA
ATGTCATGTATCCTAATAAAGAGAATGTGTTTTTGGTTCCCAATCTTGAAAAATGGAGACTGTTA
TGAGAATCAAGCCTTGCCTTATTTAAGGGATAAACTTTGATTTTAAGGAAATAGGGCAAAGAAAA
GATTTCCGTGCAAAAGAAAATCATCAATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCT
AATCACAAAATGGAAGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAG
AATTTACAAAAATTGGTGGAAGAAAGCCTTTCTTCGAAACCAAAGCGTTAATATCGTGTATCCTT
ATGAGTAAACTATG
Found at i:879843 original size:453 final size:452
Alignment explanation
Indices: 878985--879858 Score: 1225
Period size: 452 Copynumber: 1.9 Consensus size: 452
878975 TTTCCGTGCA
*
878985 AAAGAAAATCATCAATTCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAT
1 AAAGAAAATCATCAATTCATTTATCCTAATGAGGAGAATGTGTTTAGAGTGCCTAATCACAAAAT
*
879050 GGAAGAAGATCATTACTAGAATCCATGTTTGTCCCATTTGAGGCACAAACTTAGAATTTACAAAA
66 GGAAGAAAATCATTACTAGAATCCATGTTTGTCCCATTTGAGGCACAAACTTAGAATTTACAAAA
* * *
879115 ATTGGTGGGAAGAAAGCCATTATCGCGAAACTAAAACGTTAATATCGTGTATCTTATGAGCAAAC
131 ATTGGTGGGAAAAAAGCCATTATCGCGAAACCAAAACGTTAATATCGTGTATCTTATGAACAAAC
* * * *
879180 TGTGTTTATGGTGCCTAATCCTGAAAAAAATAGGGATAAGTATGACTATTTATGTTTATCTTATT
196 TATGTTTATGGTGCATAATCATGAAAAAAATAGGGATAAGTATAACTATTTATGTTTATCTTATT
* * * * * * ** * *
879245 TAAGAGACAAACTTTTATTCTATAAAAAATGATGTAAAGAAAACCTTTTCTTGGGATACGAAAGC
261 TAAGACACAAACTTTAATTCTAAAAAAAATGATGGAAAGAAAACCCTTTCATGCAACACCAAAGC
* * * * ***
879310 ATCAATGTCATGTATCCTAATAAAGAGAATGTGTTTTTGGTTCCCAATCTTGATTGAATGGAGAC
326 AACAATGTCATGTATCCTAACAAAGAGAATGTGCTTTTGGTTCCCAATATTGAAAAAATGGAGAC
*
879375 TGTTATGAGAATCAATCCTTGCCTTATTTAAGGGATAAATTTTGATTTTAAGGAAATAGGGC
391 TGTTATCAGAATCAATCCTTGCCTTATTTAAGGGATAAATTTTGATTTTAAGGAAATAGGGC
*
879437 AAAGAAAATCATCAATATCATTTATCGTAATGAGGAGAATGTGTTTAGAGTGCCTAATCACAAAA
1 AAAGAAAATCATCAAT-TCATTTATCCTAATGAGGAGAATGTGTTTAGAGTGCCTAATCACAAAA
* * * * *
879502 TGGAAGAAAATCATTACTAGAATCCCTGTTTGTCTCATTTGAGGCACGAACTTAGATTTTGCAAA
65 TGGAAGAAAATCATTACTAGAATCCATGTTTGTCCCATTTGAGGCACAAACTTAGAATTTACAAA
* * * * * *
879567 AATTGGT-GGAAAAAAGCCTTTCTGGC-ACAACCAAAGCGTTAATATCGTGTATCCTTGTGAATA
130 AATTGGTGGGAAAAAAGCCATTATCGCGA-AACCAAAACGTTAATATCGTGTAT-CTTATGAACA
* * * * * * *
879630 GACTATGTTTGTGGTGCATAATCATGAAAAGAAT-GGGTTTAGTATAATTATTTATGTTTGTCTT
193 AACTATGTTTATGGTGCATAATCATGAAAAAAATAGGGATAAGTATAACTATTTATGTTTATCTT
*
879694 ATTTAAGACACAAACTTTAATTCTAAAAAAAATGGTGGAAAGAAAACCCTTTCATGCAACACCAA
258 ATTTAAGACACAAACTTTAATTCTAAAAAAAATGATGGAAAGAAAACCCTTTCATGCAACACCAA
*
879759 AGCAACAATGTCATGTATCCTAACGAAGAGAATGTGCTTTTGGTTCCCAATATTGAAAAAAATGG
323 AGCAACAATGTCATGTATCCTAACAAAGAGAATGTGCTTTTGGTTCCCAATATTG-AAAAAATGG
* *
879824 AGACTGTTA-CATGAATCAATGCTTTCCTTATTTAA
387 AGACTGTTATCA-GAATCAATCCTTGCCTTATTTAA
879859 AAGATGAACT
Statistics
Matches: 367, Mismatches: 50, Indels: 9
0.86 0.12 0.02
Matches are distributed among these distances:
451 1 0.00
452 183 0.50
453 183 0.50
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (452 bp):
AAAGAAAATCATCAATTCATTTATCCTAATGAGGAGAATGTGTTTAGAGTGCCTAATCACAAAAT
GGAAGAAAATCATTACTAGAATCCATGTTTGTCCCATTTGAGGCACAAACTTAGAATTTACAAAA
ATTGGTGGGAAAAAAGCCATTATCGCGAAACCAAAACGTTAATATCGTGTATCTTATGAACAAAC
TATGTTTATGGTGCATAATCATGAAAAAAATAGGGATAAGTATAACTATTTATGTTTATCTTATT
TAAGACACAAACTTTAATTCTAAAAAAAATGATGGAAAGAAAACCCTTTCATGCAACACCAAAGC
AACAATGTCATGTATCCTAACAAAGAGAATGTGCTTTTGGTTCCCAATATTGAAAAAATGGAGAC
TGTTATCAGAATCAATCCTTGCCTTATTTAAGGGATAAATTTTGATTTTAAGGAAATAGGGC
Found at i:879874 original size:453 final size:452
Alignment explanation
Indices: 878985--879874 Score: 1221
Period size: 453 Copynumber: 2.0 Consensus size: 452
878975 TTTCCGTGCA
*
878985 AAAGAAAATCATCAATTCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAT
1 AAAGAAAATCATCAATTCATTTATCCTAATGAGGAGAATGTGTTTAGAGTGCCTAATCACAAAAT
*
879050 GGAAGAAGATCATTACTAGAATCCATGTTTGTCCCATTTGAGGCACAAACTTAGAATTTACAAAA
66 GGAAGAAAATCATTACTAGAATCCATGTTTGTCCCATTTGAGGCACAAACTTAGAATTTACAAAA
* * *
879115 ATTGGTGGGAAGAAAGCCATTATCGCGAAACTAAAACGTTAATATCGTGTATCTTATGAGCAAAC
131 ATTGGTGGGAAAAAAGCCATTATCGCGAAACCAAAACGTTAATATCGTGTATCTTATGAACAAAC
* * * *
879180 TGTGTTTATGGTGCCTAATCCTGAAAAAAATAGGGATAAGTATGACTATTTATGTTTATCTTATT
196 TATGTTTATGGTGCATAATCATGAAAAAAATAGGGATAAGTATAACTATTTATGTTTATCTTATT
* * * * * * ** * *
879245 TAAGAGACAAACTTTTATTCTATAAAAAATGATGTAAAGAAAACCTTTTCTTGGGATACGAAAGC
261 TAAGACACAAACTTTAATTCTAAAAAAAATGATGGAAAGAAAACCCTTTCATGCAACACCAAAGC
* * * * ***
879310 ATCAATGTCATGTATCCTAATAAAGAGAATGTGTTTTTGGTTCCCAATCTTGATTGAATGGAGAC
326 AACAATGTCATGTATCCTAACAAAGAGAATGTGCTTTTGGTTCCCAATATTGAAAAAATGGAGAC
* ** *
879375 TGTTATGAGAATCAATCCTTGCCTTATTTAAGGGATAAATTTTGATTTTAAGGAAATAGGGC
391 TGTTATCAGAATCAATCCTTGCCTTATTTAAAAGATAAACTTTGATTTTAAGGAAATAGGGC
*
879437 AAAGAAAATCATCAATATCATTTATCGTAATGAGGAGAATGTGTTTAGAGTGCCTAATCACAAAA
1 AAAGAAAATCATCAAT-TCATTTATCCTAATGAGGAGAATGTGTTTAGAGTGCCTAATCACAAAA
* * * * *
879502 TGGAAGAAAATCATTACTAGAATCCCTGTTTGTCTCATTTGAGGCACGAACTTAGATTTTGCAAA
65 TGGAAGAAAATCATTACTAGAATCCATGTTTGTCCCATTTGAGGCACAAACTTAGAATTTACAAA
* * * * * *
879567 AATTGGT-GGAAAAAAGCCTTTCTGGC-ACAACCAAAGCGTTAATATCGTGTATCCTTGTGAATA
130 AATTGGTGGGAAAAAAGCCATTATCGCGA-AACCAAAACGTTAATATCGTGTAT-CTTATGAACA
* * * * * * *
879630 GACTATGTTTGTGGTGCATAATCATGAAAAGAAT-GGGTTTAGTATAATTATTTATGTTTGTCTT
193 AACTATGTTTATGGTGCATAATCATGAAAAAAATAGGGATAAGTATAACTATTTATGTTTATCTT
*
879694 ATTTAAGACACAAACTTTAATTCTAAAAAAAATGGTGGAAAGAAAACCCTTTCATGCAACACCAA
258 ATTTAAGACACAAACTTTAATTCTAAAAAAAATGATGGAAAGAAAACCCTTTCATGCAACACCAA
*
879759 AGCAACAATGTCATGTATCCTAACGAAGAGAATGTGCTTTTGGTTCCCAATATTGAAAAAAATGG
323 AGCAACAATGTCATGTATCCTAACAAAGAGAATGTGCTTTTGGTTCCCAATATTG-AAAAAATGG
* * *
879824 AGACTGTTA-CATGAATCAATGCTTTCCTTATTTAAAAGATGAACTTTGATT
387 AGACTGTTATCA-GAATCAATCCTTGCCTTATTTAAAAGATAAACTTTGATT
879875 GTTAGGATAT
Statistics
Matches: 379, Mismatches: 54, Indels: 9
0.86 0.12 0.02
Matches are distributed among these distances:
451 1 0.00
452 183 0.48
453 195 0.51
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (452 bp):
AAAGAAAATCATCAATTCATTTATCCTAATGAGGAGAATGTGTTTAGAGTGCCTAATCACAAAAT
GGAAGAAAATCATTACTAGAATCCATGTTTGTCCCATTTGAGGCACAAACTTAGAATTTACAAAA
ATTGGTGGGAAAAAAGCCATTATCGCGAAACCAAAACGTTAATATCGTGTATCTTATGAACAAAC
TATGTTTATGGTGCATAATCATGAAAAAAATAGGGATAAGTATAACTATTTATGTTTATCTTATT
TAAGACACAAACTTTAATTCTAAAAAAAATGATGGAAAGAAAACCCTTTCATGCAACACCAAAGC
AACAATGTCATGTATCCTAACAAAGAGAATGTGCTTTTGGTTCCCAATATTGAAAAAATGGAGAC
TGTTATCAGAATCAATCCTTGCCTTATTTAAAAGATAAACTTTGATTTTAAGGAAATAGGGC
Found at i:880168 original size:20 final size:20
Alignment explanation
Indices: 880143--880214 Score: 144
Period size: 20 Copynumber: 3.6 Consensus size: 20
880133 AACCCTTGTA
880143 TGTATCGATACACACCCAGC
1 TGTATCGATACACACCCAGC
880163 TGTATCGATACACACCCAGC
1 TGTATCGATACACACCCAGC
880183 TGTATCGATACACACCCAGC
1 TGTATCGATACACACCCAGC
880203 TGTATCGATACA
1 TGTATCGATACA
880215 TTATGCTTTG
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 52 1.00
ACGTcount: A:0.31, C:0.32, G:0.15, T:0.22
Consensus pattern (20 bp):
TGTATCGATACACACCCAGC
Found at i:880343 original size:33 final size:32
Alignment explanation
Indices: 880300--880361 Score: 81
Period size: 33 Copynumber: 1.9 Consensus size: 32
880290 TATCACTATT
* *
880300 TGTATTGATACATGGT-ACATTGCATCGATATAA
1 TGTATCGATACATAGTGA-ATTG-ATCGATATAA
880333 TGTATCGATACATAGTGAATTGATCGATA
1 TGTATCGATACATAGTGAATTGATCGATA
880362 CATTGCTTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
32 7 0.27
33 18 0.69
34 1 0.04
ACGTcount: A:0.34, C:0.11, G:0.19, T:0.35
Consensus pattern (32 bp):
TGTATCGATACATAGTGAATTGATCGATATAA
Found at i:888092 original size:21 final size:22
Alignment explanation
Indices: 888050--888092 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
888040 GAGTTATAAA
**
888050 CAAATGTTTTTGAACCTTAAAT
1 CAAATGTTTTTGAACCAAAAAT
*
888072 CAAATGTTTTT-AAGCAAAAAT
1 CAAATGTTTTTGAACCAAAAAT
888093 ACTTCAAAGT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.42, C:0.12, G:0.09, T:0.37
Consensus pattern (22 bp):
CAAATGTTTTTGAACCAAAAAT
Found at i:888245 original size:19 final size:19
Alignment explanation
Indices: 888220--888276 Score: 69
Period size: 19 Copynumber: 2.9 Consensus size: 19
888210 TTGTATCGAT
* *
888220 ACATTGTATTGACACATGT
1 ACATTGTATTGATACATGC
* *
888239 TCATTGTATCGATACATGC
1 ACATTGTATTGATACATGC
888258 ACAATTGTATTGATACATG
1 AC-ATTGTATTGATACATG
888277 AAAGTGGCAG
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
19 16 0.52
20 15 0.48
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.37
Consensus pattern (19 bp):
ACATTGTATTGATACATGC
Found at i:888811 original size:9 final size:9
Alignment explanation
Indices: 888797--888828 Score: 64
Period size: 9 Copynumber: 3.6 Consensus size: 9
888787 CTTTAAAAGA
888797 TAAGGTTTG
1 TAAGGTTTG
888806 TAAGGTTTG
1 TAAGGTTTG
888815 TAAGGTTTG
1 TAAGGTTTG
888824 TAAGG
1 TAAGG
888829 AACCTCTATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.25, C:0.00, G:0.34, T:0.41
Consensus pattern (9 bp):
TAAGGTTTG
Found at i:889388 original size:159 final size:158
Alignment explanation
Indices: 889019--889360 Score: 346
Period size: 159 Copynumber: 2.2 Consensus size: 158
889009 CATGGAAAAG
* * * * * * * *
889019 AAAATCATCAATATCATTTATCCTAATAAGGAGAATCTGTTTATAGTGCCAAATCC-CAAAATGA
1 AAAAGCATCAATATCATGTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATCCTGAAAAT-A
* *
889083 AT-GAAGATTA-TGA-GA--ATCCATGTTTGTCTTATTTAAAGCATGAACTTAGACTTTACAAAA
65 ATAG-GGATTACT-ATGACTATGCATGTTTGTCTTATTTAAAGCA-GAACTTAGACTTTACAAAA
* * *
889143 ATTGGTGGGAAGAAAGCCTTTTCTATGAAACC
127 ATTGATGGGAAAAAAACCTTTTCTATGAAACC
* * *
889175 AAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAATAA
1 AAAAGCATCAATATCATGTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATCCTGAAAATAA
*
889240 TAGGGATTACTATGACTATGCATGTTTGTCTTATTTAATAGACA-AACTTTGA-TTCTATCAAAA
66 TAGGGATTACTATGACTATGCATGTTTGTCTTATTTAA-AG-CAGAACTTAGACTT-TA-CAAAA
*
889303 A-TGATGGGAAAAAAACCTTTTCT-TGCGATA-C
127 ATTGATGGGAAAAAAACCTTTTCTAT--GAAACC
*
889334 AAAAGCATCAATGTCATGTATCCTAAT
1 AAAAGCATCAATATCATGTATCCTAAT
889361 AAAGGGAATG
Statistics
Matches: 153, Mismatches: 21, Indels: 21
0.78 0.11 0.11
Matches are distributed among these distances:
156 55 0.36
157 9 0.06
158 3 0.02
159 73 0.48
160 11 0.07
161 2 0.01
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.32
Consensus pattern (158 bp):
AAAAGCATCAATATCATGTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATCCTGAAAATAA
TAGGGATTACTATGACTATGCATGTTTGTCTTATTTAAAGCAGAACTTAGACTTTACAAAAATTG
ATGGGAAAAAAACCTTTTCTATGAAACC
Found at i:891973 original size:476 final size:475
Alignment explanation
Indices: 890043--892208 Score: 2542
Period size: 476 Copynumber: 4.6 Consensus size: 475
890033 TATTGTTACA
* * * *
890043 AACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTTTGAAACCAAAACGTCAATATCA
1 AACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTATGAAACCAAAGCATCAATATCG
* * * ** * *
890108 TGTATCC-CAAGAAGAATACTATGTTTATGGTGTTTAAT-TCTGAAAAGAATGGGGATTAGTTTA
66 TGTATCCTTATG-AGAAGACTATGTTTATGGTGCCTAATCT-TGAAAAGAATAGGGATTAGTATA
* * * * *
890171 ACTATTCTTGTTTGTCTTGTTTAAGAGACAAACTTTGATTCCAT-AAAAAATAGTAGAAAGAAGA
129 ACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAATA-TGGAAAGAAAA
* * * * *
890235 CCTTTTCATGCAACACCAAAGCGTCAATGTCATGTCTCCTAATGAAGAGATTGTGTTTTTGGTTC
193 CCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGTTC
** * * * *
890300 TTAATGTTAAAAAGAATGGAGACTGTTATGAGTATCAAGGCTAGCCTTATTTAAGGGATGAACTT
258 CCAATCTTAAAAAGAATGGAGACTGTTACGAGAATCAAGGCTAGCCATATTTAAGGGATGAACTT
*
890365 TGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAAAAAAATCATCAATATCATTT
323 TGATTTTAAGGAAAATAGGGCAAA-AAAAGATTTTCATGC-AAAAGAAAATCATCAATATCATTT
* *
890430 ATCC-AAATAAGGAGAATTTGTTTATAGTGCCAAAATAACAAAATGAATGAAGATCATTACTAGA
386 ATCCTAAA-AAGGAGAATGTGTTTATAGTGCC-AAATCACAAAATGAATGAAGATCATTACTAGA
*
890494 ATCCATGTTTGTCTCATTTGAAGCATG
449 ATCCATATTTGTCTCATTTGAAGCATG
* * * * *
890521 AACTTAGACTTTACAAGAATTGGTGGGAAGAAAGCCTTTCATATGAAACAAAAACATCAATATTG
1 AACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTATGAAACCAAAGCATCAATATCG
* * * * ** *
890586 TGTATCCTTATGAGAAAACTATGTTTATGGTGCTTAAT-TCTAAAAATAACGGGGATTAGTATGA
66 TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCT-TGAAAAGAATAGGGATTAGTATAA
* * * *
890650 CTATTCTTGTTTGTCTTATTTAAGGGACAAACTTTGATTCCAT-AAAAAATAGCGGAAAGAAAAC
130 CTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAATA-TGGAAAGAAAAC
* * * * *** *
890714 CTTTTCATGCAACACCAAAGCATCCATGTCATGTATCCTAATGAAGGGAAAACGTTTCTGGTTCC
194 CTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGTTCC
* * * ** *
890779 CAATCTTGAAAAGAATGGAGACTGTTACCAGAATCAATGCTTCCCATATTTAAGGGATAAACTTT
259 CAATCTTAAAAAGAATGGAGACTGTTACGAGAATCAAGGCTAGCCATATTTAAGGGATGAACTTT
*
890844 AATTTTAAGGAAAATAGGGTGC-AAAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTA
324 GATTTTAAGGAAAATA-GG-GCAAAAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTA
* ** *
890908 TCTTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC
387 TCCTAAAAAGGAGAATGTGTTTATAGTGCCAAATCACAAAATGAATGAAGATCATTACTAGAATC
* * *
890973 TATATTTGTCACATTTGAGGCATG
452 CATATTTGTCTCATTTGAAGCATG
* * * * * *
890997 AACTTAGACTTCACAAAAATTGGTGGGAAAAAAGCCATTCTTGT-AATACCAAAGCGTCAATGTC
1 AACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTATGAA-ACCAAAGCATCAATATC
* ** * ** ** * *
891061 ATGTATCCCAATAAGAAGACTATGTTTATAATGCCTAATC-CAAAAGAGAATGGGGATTAGTGTA
65 GTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAA-AGAATAGGGATTAGTATA
* * * * *
891125 ACTAGTCATGTTTGTCTTATTTGAGTGGCAAACGTTGATTCTATC-AAAAA-ATGGAAAGAAAAC
129 ACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAATATGGAAAGAAAAC
* * * * * *
891188 CTTTTCTTACGATACGAAAGCATCAATGTCATGTATCTTAATGAAAAGAATGTGTTCTTGGTTCC
194 CTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGTTCC
* * * * ** * * * *
891253 CAATCTTGAAAGGAATGGAGATTGTTACAAGAATTGACGCTTGTCATATTTAAGGGATGAATTTT
259 CAATCTTAAAAAGAATGGAGACTGTTACGAGAATCAAGGCTAGCCATATTTAAGGGATGAACTTT
* * * * *
891318 TATTTTAAGGAAAATAGGG-AAAAAAAGATTTCCATGCAAAAGTAAATTATCAATATCCTTTATC
324 GATTTTAAGGAAAATAGGGCAAAAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATC
*** * * *
891382 CTAGCGAGGAGAATGTGTTTATAGTGCCAAATGACAAAATGAATAAAGATCATTACTAGAATCTA
389 CTAAAAAGGAGAATGTGTTTATAGTGCCAAATCACAAAATGAATGAAGATCATTACTAGAATCCA
* * *
891447 TATTTGTCCCATTTGAGGCACG
454 TATTTGTCTCATTTGAAGCATG
* * * *
891469 AACTTTGACCTAACAAAAATTAGTGGGAAGAAAGCCTTTCTTATGAAACCAAAGCATCAATATCG
1 AACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTATGAAACCAAAGCATCAATATCG
* * * * * *
891534 TGTATCCTTACGATAAGACTATGTTTATGGTGCCTAATCTTGGAAGGAATAAGGATTAGTATGAC
66 TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATAGGGATTAGTATAAC
* *** * **
891599 TATTCATGTTTATCTTATTTAAGAGTTGAACCTTGATTCTATCAAAAACGATGGAAAGAAAACCT
131 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAATATGGAAAGAAAACCT
* * * * *
891664 TTTCTTGCGATACCAAGGCATCAATGTCTTGTATCCTAATGAAGAGATTGTGTTTTTGGTTCTCA
196 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGTTCCCA
* * *
891729 ATGTTAAAAAGAATGGAGACTATTATGAGAATCAAGGCTAGCCATATTTAAGGGATGAACTTTGA
261 ATCTTAAAAAGAATGGAGACTGTTACGAGAATCAAGGCTAGCCATATTTAAGGGATGAACTTTGA
891794 TTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCC
326 TTTTAAGGAAAATAGGGCAAA-AAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCC
** * *
891859 TAAAAAATAGAATTTGTTTATAGTGCCAAATCACAAAATGAATGAAGATCATTACTTGAATCCAT
390 TAAAAAGGAGAATGTGTTTATAGTGCCAAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
*
891924 GTTTGTCTCATTTGAAGCATG
455 ATTTGTCTCATTTGAAGCATG
* * *
891945 AATTTAGACTTTACAAGAATTGGTGGGAAGAAAGCCTTT-TATATGAAAGCAAAGCATCAATATC
1 AACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCT-TATGAAACCAAAGCATCAATATC
* * * *
892009 GTGTATCTTTATGAAAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATTA
65 GTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATAGGGATTAGTATAA
* * * * * *
892074 CTATTTATGTTTGTCTTATTTAGGGGACAAACTTTGATTCTATCAAATACA-ATGGAAAAAAAAT
130 CTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAA-AAATATGGAAAGAAAAC
* * * * * * ** *
892138 CTTTTCTTGCGACCCCAAAGCTTTAATGTCTTGTATCCTAATGAAGGGAACGTGTTCCTGATTCC
194 CTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGTTCC
892203 CAATCT
259 CAATCT
892209 GGAAAGGAAT
Statistics
Matches: 1433, Mismatches: 238, Indels: 36
0.84 0.14 0.02
Matches are distributed among these distances:
472 254 0.18
473 10 0.01
474 271 0.19
475 11 0.01
476 521 0.36
477 48 0.03
478 310 0.22
479 6 0.00
480 2 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.32
Consensus pattern (475 bp):
AACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTATGAAACCAAAGCATCAATATCG
TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATAGGGATTAGTATAAC
TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAATATGGAAAGAAAACCT
TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGTTCCCA
ATCTTAAAAAGAATGGAGACTGTTACGAGAATCAAGGCTAGCCATATTTAAGGGATGAACTTTGA
TTTTAAGGAAAATAGGGCAAAAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCT
AAAAAGGAGAATGTGTTTATAGTGCCAAATCACAAAATGAATGAAGATCATTACTAGAATCCATA
TTTGTCTCATTTGAAGCATG
Found at i:895113 original size:470 final size:469
Alignment explanation
Indices: 894375--895361 Score: 1145
Period size: 470 Copynumber: 2.1 Consensus size: 469
894365 TTTGAGGGAT
** **
894375 GAAA-TTTGATTCTATCAAAAACAATGGAAAG-AAAGCTTTTCTTGTGACACCAAAGCATCAATG
1 GAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATG
*
894438 TCATGTATCATAAAGAAGGGAATGTGTACTTGGTTCCCAATCTTGAAAAGAATAGAGACCATTAC
66 TCATGTATCATAAAGAAGGGAA----TAC-TGGTTCCCAATCTTGAAAAGAATAGAGACCACTAC
* * * * * *
894503 GAGAATCGACACTTGTCATATTTAATGGATGAGTTTTGATTTTAAGGAAAATAGGATAAAGAAAT
126 GAGAATCGACACTTGCCATATTCAAGGGATGAGCTTTGATTTTAAGGAAAATAGGACAAAGAAAA
* *
894568 GATTTCCATGCAAAAGAAAATCCTCAATATCATTTATCCTAATGAGGGGAATGTATTTATAGTGC
191 GATTTCCATGCAAAAGAAAATCCTCAATATCATTTATCCTAATGAGGAGAATGTATTTATACTGC
* * * ** * *
894633 CTACTCACAAAATGAATGAAGATAATTACTAGAATTCATTTTTTTTCTCATTTGAGGCATAAAGA
256 CTAATCACAAAATGAAAGAAGATAATTACTAGAATCCA-TGATTGTCTCATTTGAGGCATAAACA
* * ** ** * * *
894698 TA-GTCTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGTGAAACTGAAGCGTCAAAATCGTGT
320 TACAT-TTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAAAATCATCT
** * * * * *
894762 ATTTTTATGATAAGACTATGTTTACGGTGCCTAATCCTAAA-AAAATGGGGATTAGTATGACTAT
384 ATCCTAATAAGAAGACTATGTTTACAGTGCCTAATCCTAAATAAAATGGGGATTAGCATGACTAT
*
894826 TCATGTTTGTCTTATTTAAGA
449 TCATGTTTGTATTATTTAAGA
*
894847 GATAAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGGCACCAAAGCATCA
1 G---AAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCA
* * * * * *
894912 ATGTCATGTCTCCTAATGAAGGG-A-A-TGGTTCCCAATCTTGAAGAGAAT-GAAGACTACTATG
63 ATGTCATGTATCATAAAGAAGGGAATACTGGTTCCCAATCTTGAAAAGAATAG-AGACCACTACG
* *
894973 AGAAT-GA-ATGCTTGCCTTTATTCAAGGGATGCA-CTTTGATTTTAAGGAAAATAGGGCAAAGA
127 AGAATCGACA--CTTGCC-ATATTCAAGGGATG-AGCTTTGATTTTAAGGAAAATAGGACAAAGA
* * *
895035 AAAGATTTTCATGCAAAAGAAAA-CCATCAATATCATTTGTCCTAATGAGGAGAATGTGTTTATA
188 AAAGATTTCCATGCAAAAGAAAATCC-TCAATATCATTTATCCTAATGAGGAGAATGTATTTATA
* ** *
895099 CTGCTTAATCACAAAATGAAAGAAGATGCTTACTAGAATCCATGATTGTCTCATTTGAGGCATGA
252 CTGCCTAATCACAAAATGAAAGAAGATAATTACTAGAATCCATGATTGTCTCATTTGAGGCATAA
* * **
895164 ACTTACATTTTACAAAATTTGGTAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATGTCAT
317 ACATACATTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAAAATCAT
* * * *
895229 CTATCCTAATAAGAAGACTATGTTTATAGTGCCTAATCTTAAATAGAATGGGGATTAGCATGAGT
382 CTATCCTAATAAGAAGACTATGTTTACAGTGCCTAATCCTAAATAAAATGGGGATTAGCATGACT
895294 ATTCATGTTTGTATTATTTAAGA
447 ATTCATGTTTGTATTATTTAAGA
* * **
895317 GAAACTTTGATTCTATGAAAAATGGTGGTAAA-AAATCCTTTTCTT
1 GAAACTTTGATTCTATCAAAAACGGTGG-AAAGAAAAGCTTTTCTT
895362 GCAAAGCAAA
Statistics
Matches: 436, Mismatches: 65, Indels: 33
0.82 0.12 0.06
Matches are distributed among these distances:
467 37 0.08
468 6 0.01
469 145 0.33
470 170 0.39
471 2 0.00
472 1 0.00
475 3 0.01
476 26 0.06
477 46 0.11
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (469 bp):
GAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATG
TCATGTATCATAAAGAAGGGAATACTGGTTCCCAATCTTGAAAAGAATAGAGACCACTACGAGAA
TCGACACTTGCCATATTCAAGGGATGAGCTTTGATTTTAAGGAAAATAGGACAAAGAAAAGATTT
CCATGCAAAAGAAAATCCTCAATATCATTTATCCTAATGAGGAGAATGTATTTATACTGCCTAAT
CACAAAATGAAAGAAGATAATTACTAGAATCCATGATTGTCTCATTTGAGGCATAAACATACATT
TTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAAAATCATCTATCCTAA
TAAGAAGACTATGTTTACAGTGCCTAATCCTAAATAAAATGGGGATTAGCATGACTATTCATGTT
TGTATTATTTAAGA
Found at i:897750 original size:476 final size:476
Alignment explanation
Indices: 895940--898123 Score: 2612
Period size: 476 Copynumber: 4.6 Consensus size: 476
895930 GAGGAAATTG
* * * * *
895940 GATTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTGT
1 GATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAT
* ** * * * * *
896005 CCCAAAAAAGGGAATGTGTACTTGGTTCCTAATCTTGAAAAGAATAGAAACTATTACGAGAATCG
66 CCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCG
* * * * * *
896070 ATACTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGACAAA-AAAATATTTTCA
131 ATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGCAAATAAAAGATTTTCA
* * *
896134 TGCAAAAGAAAATCCTCAATATCATTTATCCTAATAAGGGGAATGTGTTTATAGTGCCTAATCAC
196 TGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC
* * *
896199 AAAATAAATGAAGATCATTACTAGAACCCATGTTTGTCTCATTTGAGGCACGAACATAGACTTTA
261 AAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACATAAACTTTA
* * * * * * *
896264 CAAAAAAATGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCATGTAT-TTTTAT
326 C-AAAAATTGGAGGGAAGAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATCTATCCTAT-T
* * * * * *
896328 GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAATATGACTGTTCATATTG
389 GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTAATGTTT
*
896393 GTCTTATTTAAGAGATAAACTTT
454 GTCTTATTTAAGAGACAAACTTT
* * * * *
896416 GATTCTACCAAAAACGATGGAAAGAAAACTTTTTCCTGCAACACCAAAGCATCAATGTCATGTAT
1 GATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAT
* * * * * *
896481 CCCAA--CA---AATGTATT-TCTGGTTCCCAATATGGAAAAGAATGGAGACTGTTACGATAATC
66 CCTAATGAAGGGAATGTGTTCT-TGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATC
* * * ** *
896540 GATGCTTGTCTTATTTACGCGATGAA----GATTTTAAAGAAAATAGTGTGAAGAAAAG-TTTTC
130 GATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGCAAATAAAAGATTTT-
* * * * *
896600 CACGCAAAAGAAAATCATTAGTATCATTTATCCTAATGGGGATAATGTGTTTATAGTGCCTAATC
194 CATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC
* * * *
896665 ACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTTAACTT
259 ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACATAAACTT
* * * * **
896730 TATAAAAATTGGAGGGAAGAAAACTTTTCTTGCGAAACCAAAGCTTCAATTTTGTCTATCCTAAT
324 TACAAAAATTGGAGGGAAGAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATCTATCCT-AT
* * *
896795 T-AGAAGACTACGTTTATGATGCCTAATCCTGAAAAGAATAAGGATTAGTATGACTATTAATGTT
388 TGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTAATGTT
*
896859 TGTCTTATTTAAAAGACAAACTTT
453 TGTCTTATTTAAGAGACAAACTTT
* * * *
896883 GATTCAATCAAAAATGGTGAAAAGAAAATCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAT
1 GATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAT
* * ** *
896948 CTTAATGAA-GAAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGA-ACTGTTATAAGAGTCG
66 CCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCG
* * * *
897011 ATGCTTGTCTTATTTATGGGATGAACTTTGATTTTAAGGAAAGTAGGGC-AATGAAAAGATTTCC
131 ATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGCAAAT-AAAAGATTTTC
* * *
897075 ATGCAAAAGAAAATCATTAACATTATTTATCCTAATGAGTGA-AATGTGTTTATAGTGCCTAATC
195 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAG-GAGAATGTGTTTATAGTGCCTAATC
* * * * **
897139 ACAAAATGAAGGAAGATCATTACTAGAATCCATGATTGTCTCATTTGAGGCACAAACTTTGACTT
259 ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACATAAACTT
* * * * ** *
897204 TACAAAAATTGGAGGGAAGAAAGCCTTTT-TTGTGAAGCCAAAGCTTCAATTTTGTCTATCCTAA
324 TACAAAAATTGGAGGGAAGAAAG-CTTTTCTTGCGAAACCAAAGCATCAATATCATCTATCCTAT
* *
897268 TGAGAAGACTATGTTTATGGTACCTAATCTTGAAAAGAATAGGGATTAGTATGACTATTAATGTT
388 TGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTAATGTT
*
897333 TGTCTTATTTAAGAGAGAAACTTT
453 TGTCTTATTTAAGAGACAAACTTT
* * * * *
897357 AATTCTATAAAAAAGGGTGGAAATAAAACCTTTTCTTGCGACACTAAAGCATCAATGTCATGTAT
1 GATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAT
* * * * ***
897422 CGTAATGAAGGGAATGTGTTCTCGATTCCCAATCTTGAAAAGAATGGAGACTTTTGTAAGAATCG
66 CCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCG
*
897487 ATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGCAAATAAATGATTTTCA
131 ATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGCAAATAAAAGATTTTCA
* * *
897552 TGTAAAA-AAACATCATCAATATCGTTTATCCTAATGAGGAGAATGTGTTTATAATGCCTAATCA
196 TGCAAAAGAAA-ATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * *
897616 CAAAATGAAT-AGAGATAATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGGACATAAACTT
260 CAAAATGAATGA-AGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACATAAACTT
* * * * * * *
897680 CACAAAAATTGGTGGAAAGAAAGCTTTTCATGCGAAACTAAAGCATCAATATCATGTATCCTTTT
324 TACAAAAATTGGAGGGAAGAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATCTATCCTATT
** * * *
897745 GAGAAGACTAAATTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTT
389 GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTAATGTTT
*
897810 GTCTTAGTTAAGAGACAAACTTT
454 GTCTTATTTAAGAGACAAACTTT
* * * * * * *
897833 GATTCTATCAAAAACGGTTGAAGGAAAAGCTTTTCGTGCGACACCAAAGAATCGATGTCATTTAT
1 GATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAT
* ** * ** *
897898 CTTAATGAAGGGAATGACTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACACTTACGAGAATCA
66 CCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCG
* * * *
897963 ATGCTTGTCTTATTTAAGGGAGGAACTTTCATTTT-AAGAAAAATTGGGCAAATAAAAGATTTCC
131 ATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAG-AAAATAGGGCAAATAAAAGATTTTC
* * * * * * *
898027 ATGCAAAAGAAAATTATCAATATCATTTATCCTGAGGAGGACAAAGTGTTTATTGTGCCTAATAA
195 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * *
898092 AAAAATGATTGAAGATCATTACTACAATCCAT
260 CAAAATGAATGAAGATCATTACTAGAATCCAT
898124 ATGTTTATGG
Statistics
Matches: 1459, Mismatches: 220, Indels: 58
0.84 0.13 0.03
Matches are distributed among these distances:
467 203 0.14
468 123 0.08
469 2 0.00
470 36 0.02
471 94 0.06
472 1 0.00
473 4 0.00
474 335 0.23
475 59 0.04
476 595 0.41
477 7 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (476 bp):
GATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAT
CCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCG
ATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGCAAATAAAAGATTTTCA
TGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC
AAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACATAAACTTTA
CAAAAATTGGAGGGAAGAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATCTATCCTATTGA
GAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTAATGTTTGT
CTTATTTAAGAGACAAACTTT
Found at i:898448 original size:370 final size:370
Alignment explanation
Indices: 897757--898449 Score: 939
Period size: 370 Copynumber: 1.9 Consensus size: 370
897747 GAAGACTAAA
*
897757 TTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTAGTTAAG
1 TTTATGGTGCCTAATCCTAAAAAGAATCGGGATTAGTATGACTATTCATGTTTGTCTTAGTTAAG
* * * * * *
897822 AGACAAACTTTGATTCTATCAAAAACGGTTGAAGGAAAAGCTTTTCGTGCGACACCAAAGAATCG
66 AGACAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCCTTTCGTGCGACACCAAAGAAGCA
* * *
897887 ATGTCATTTATCTTAATGAAGGGAATGACTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACACT
131 ATGTCATGTATCTTAATGAAGGGAATGACTTTTTGGTTCCCAATCTTGAAAAGAATGAAAACACT
* * *
897952 TACGAGAATCAATGCTTGTCTTATTTAAGGGAGGAACTTTCATTTTAAGAAAAATTGGGCAAATA
196 TACGAAAATCAATGCTTGTCATATTTAAGGGAGGAACTTTCATTTTAAGAAAAATAGGGCAAATA
* * * *
898017 AAAGATTTCCATGCAAAAGAAAATTATCAATATCATTTATCCTGAGGAGGACAAAGTGTTTATTG
261 AAAGATTTCCATGAAAAAGAAAATTATCAATATCAATTATCCTAACGAGGACAAAGTGTTTATTG
898082 TGCCTAATAAAAAAATGATTGAAGATCATTACTACAATCCATATG
326 TGCCTAATAAAAAAATGATTGAAGATCATTACTACAATCCATATG
* * * * *
898127 TTTATGGTGCCTAATCCTGAAAAGAATCGGGTTTAGTATGACTATTTATGTTTGTCTTATTTTAG
1 TTTATGGTGCCTAATCCTAAAAAGAATCGGGATTAGTATGACTATTCATGTTTGTCTTAGTTAAG
** * *
898192 AGACAAACTTTGATTCTATCAAAAGTAGTGGAAAGAAAA-CACTTTCTTGCGACACCAAAGCAGC
66 AGACAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGC-CTTTCGTGCGACACCAAAGAAGC
** *
898256 AATGTCATGTATCTTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTT-AAAGAGATTGAAAACT
130 AATGTCATGTATCTTAATGAAGGGAATGACTTTTTGGTTCCCAATCTTGAAA-AGAATGAAAAC-
* * * ** * *
898320 A-TTATGAAAATCGATGCTTGTCATATTTGAA-GGATGAGTTTTTATTTTAAGGAAAATAGGGCA
193 ACTTACGAAAATCAATGCTTGTCATATTT-AAGGGAGGAACTTTCATTTTAAGAAAAATAGGGCA
* * *
898383 CAA-AAAAGATTTTCATGAAAAAGAAAATCT-TCAATATCAATTATCCTAACGAGGAGAACGTGT
257 -AATAAAAGATTTCCATGAAAAAGAAAAT-TATCAATATCAATTATCCTAACGAGGACAAAGTGT
898446 TTAT
320 TTAT
898450 AGTTCACAAA
Statistics
Matches: 278, Mismatches: 39, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
369 4 0.01
370 268 0.96
371 6 0.02
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (370 bp):
TTTATGGTGCCTAATCCTAAAAAGAATCGGGATTAGTATGACTATTCATGTTTGTCTTAGTTAAG
AGACAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCCTTTCGTGCGACACCAAAGAAGCA
ATGTCATGTATCTTAATGAAGGGAATGACTTTTTGGTTCCCAATCTTGAAAAGAATGAAAACACT
TACGAAAATCAATGCTTGTCATATTTAAGGGAGGAACTTTCATTTTAAGAAAAATAGGGCAAATA
AAAGATTTCCATGAAAAAGAAAATTATCAATATCAATTATCCTAACGAGGACAAAGTGTTTATTG
TGCCTAATAAAAAAATGATTGAAGATCATTACTACAATCCATATG
Found at i:899151 original size:301 final size:305
Alignment explanation
Indices: 898577--899166 Score: 843
Period size: 303 Copynumber: 1.9 Consensus size: 305
898567 ATCATTATCC
*
898577 TTACTAGAGTCCATGTTTGTCTCATTTGAGGCATGAACTTAGAATTTACAAAAATTGGTGGAAAA
1 TTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGAATTTACAAAAATTGGTGGAAAA
* ** * *
898642 AAAGGCCGTTCTTGTGAAACCAAAGCATCTATATTGTGTATCCTTATGAGAAGACTATGTTTATG
66 AAAGGCCGTTCTTGTCAAACCAAAGCATCTATATCATCTATCCTAATGAGAAGACTATGTTTATG
* * * * * * *
898707 GTGCCTAATCCTGAAAAGAATTGGGTTTAGTATGACCATTCATGTTTGTCTTATTTTGGAGATAA
131 GTGCCTAATCCTAAAAAGAATAGGGATTAGCATGACCATTCAAGTTTGTCTTATTTTGAAGAGAA
* * * * *
898772 ACTTTGACTCTATCAAAAACGGTGGAAAGAAAACTTTTTCTTGCGACACCAAAGCATTAGTGTGA
196 ACTTTAACTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCAACACCAAAGCATCAGTGTCA
*
898837 TGTGTCCTAATGAAGGGAATA-TGTTCTTGAAATGAATGAAGATCA
261 TGTATCCTAATGAAGGGAA-AGTGTTCTTGAAATGAATGAAGATCA
*
898882 TTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGT-GAAAA
1 TTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGAATTTACAAAAATTGGTGGAAAA
* *
898946 GAAA-GCCTTTCTTG-CAAACCAAAGCAT-TAATATCATCTATCCTAATGAGAGGACTATGTTTA
66 -AAAGGCCGTTCTTGTCAAACCAAAGCATCT-ATATCATCTATCCTAATGAGAAGACTATGTTTA
* *
899008 TGGTGCCTAATCCTAAAAAGAATAGGGATTAGCATGACTATTCAAGTTTGTTTTA-TTT-AAGAG
129 TGGTGCCTAATCCTAAAAAGAATAGGGATTAGCATGACCATTCAAGTTTGTCTTATTTTGAAGAG
* *
899071 AAACTTTAATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCAATACCAAAGCATCAGTGT
194 AAACTTTAACTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCAACACCAAAGCATCAGTGT
* **
899136 CTTGTATTTTAATGAAGGGAAAGTGTTCTTG
259 CATGTATCCTAATGAAGGGAAAGTGTTCTTG
899167 GTTCCTAATC
Statistics
Matches: 253, Mismatches: 29, Indels: 10
0.87 0.10 0.03
Matches are distributed among these distances:
300 1 0.00
301 86 0.34
302 4 0.02
303 88 0.35
304 14 0.06
305 60 0.24
ACGTcount: A:0.34, C:0.14, G:0.19, T:0.33
Consensus pattern (305 bp):
TTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGAATTTACAAAAATTGGTGGAAAA
AAAGGCCGTTCTTGTCAAACCAAAGCATCTATATCATCTATCCTAATGAGAAGACTATGTTTATG
GTGCCTAATCCTAAAAAGAATAGGGATTAGCATGACCATTCAAGTTTGTCTTATTTTGAAGAGAA
ACTTTAACTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCAACACCAAAGCATCAGTGTCA
TGTATCCTAATGAAGGGAAAGTGTTCTTGAAATGAATGAAGATCA
Found at i:901418 original size:945 final size:940
Alignment explanation
Indices: 898866--901945 Score: 3834
Period size: 946 Copynumber: 3.3 Consensus size: 940
898856 TATGTTCTTG
* *
898866 AAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTAC
1 AAATAAATGAAGATCATTACT-GAATCCATATTTGTCTCATTTGAGGCATGAACTTAGACTTTAC
** * *
898931 AAAAATTGGTGAAAAGAAAGCCTTTCTTGC-AAACCAAAGCATTAATATCATCTATCCTAATGAG
65 AAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAG
* * * *
898995 AGGACTATGTTTATGGTGCCTAATCCTAAAAAGAATAGGGATTAGCATGACTATTCA-AGTTTGT
130 AAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATAGGGATTAGTATGACTATTCATA-TTTGT
* * * *
899059 TTTATTTAAGAG--AAACTTTAATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCAATAC
194 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAA-CTTTTCTTGCGACAC
* * ** * *
899122 CAAAGCATCAGTGTCTTGTATTTTAATGAAGGGAA-AGTGTTCTTGGTTCCTAATCTTGAAAATA
258 CAAAGCATCAATGTCATGTATCCTAATGAAGGGAATA-TGTTCTTGGTTCCCAATCTTGAAAAAA
* * ** * * * * *
899186 ATGTAA-ACAGTTACGAGAATC-GATGCTTTTCATATTTAAGTGATTAATTTTTATTTTAAGGAA
322 AT-AAAGACAGTTGCGAGAATCAG-TGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAA
* * * * *
899249 GATAGGGCAAAGAAAAGATTTTCATGCTAAAGAAAATCATCAGTATCATTTATCCTAATGA-GAA
385 AATAGGGCAAA-AAAAGATTTTCATGCAAAAGAAAAGCATCAGTAACATTTATGCTAATGAGGAA
*
899313 GAATGTGTTTATAGTGCCTAATCC----CTAAGTGAAGATCATTACT--AATCCATGTTTGTCTT
449 -AATGTGTTTATAGTGCCTAATCCAAAATTAA-TGAAGATCATTACTAGAATCCATGTTTGTCTT
* * * * *
899372 TTTTAAGGCATGAACTTAGACTTTACAAAAATGGTGGGAAGAAAGCCTTTCTTACGAAACGAAAG
512 ATTTGAGGCATGAACTTAGACTTTACAAAATTGGT-GGAAGAAAGCCTTTCTTGC-AAACCAAAG
* * * * * * *
899437 CGTTAATATCATGTATCCTGAGGA-AATGA-TAATGTTTATGCTGCCTAATCCTGAAAAGAATA-
575 CATTAATATCGTCTATCCTAATGAGAA-GACT-ATGTTTATGGTGCCTAATCCTAAAAAGAATAG
* * * * *
899499 CGGATTAGTATGACTATTTATATTTGTCTTATTTAAGAGATAAACTTTAATTCTATAAATAACAG
638 C-GATTAGCATGACTATTCATGTTTGTCTTATTTAAGAG--AAACTTTAATTCTATCAA-AATAG
* * * *
899564 TGGAAAGGAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGT
699 TGGAAA-GAAAACTTTTCTTGTGACACCAAAGCATCAATGTCTTGTATTCTAATGAAGGGAATGT
* * * * * * *
899629 GTTCTTGGTTCGCAATCTTGAAAAGAATAGAGACTATTATAGGAATCGATGCTTGTCTTGTTTAA
763 GTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTA-CGAAATCGATGCTTGTCATATTTAA
* *
899694 GTGATTAATTTTTATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCTAAAGAAAATCATC
827 GTGATTAATTTTTATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCTAAAGAAAATCATA
* *
899759 AATATCATTTATCCTAATGAGAAAAATGTGTTTATAATGCCTAATCCCT
892 AATATCATTTATCCTAATGAGAAGAATGTGTTTATAGTGCCTAATCCCT
* * * * *
899808 AAAAAAATGAAAATCATTACTAGAATCCATATTTCTCTCATTTGAGGCACGAGCTTAGACTTTAC
1 AAATAAATGAAGATCATTACT-GAATCCATATTTGTCTCATTTGAGGCATGAACTTAGACTTTAC
* * * * ** * *
899873 AAAAATCGGTGGGAAAAAAGCTTTTTCTTTCGAAACCAAAGTGTCAATATCGTGTATCCTTATGA
65 AAAAATTGGTGGGAAGAAAGC-CTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA
* * * * * * *
899938 GAAGGCTAGGTTTATGGTGCCCAATAC-TGAAAAGAATGGGGATTAATATGACTCTTCATGTTTG
129 GAAGACTATGTTTATGGTGCCTAAT-CTTGAAAAGAATAGGGATTAGTATGACTATTCATATTTG
* * * * * *
900002 TCATAATCAAGAGACAAACTTTGATTCTGTCAAAAACGGTGGAAAGAAAACATTTTCCTGGGACA
193 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAC-TTTTCTTGCGACA
* * * *
900067 CCAAAGCATCAATGTGATGTGTCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGA
257 CCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATATGTTCTTGGTTCCCAATCTTGAAAAAA
** * * * *
900132 ATGGAGACAGTTGCAAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGATAA
322 ATAAAGACAGTTGCGAGAATCAGTGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAA
** * * ** *
900197 TAGGGCAAAAAAAAGATTTTTGTGCAAAATAAAAGCGTTTGTAACATTTATGCTAATGAGAAAAA
387 TAGGGC-AAAAAAAGATTTTCATGCAAAAGAAAAGCATCAGTAACATTTATGCTAATGAGGAAAA
*
900262 TGTGTTTATAGTGCCTAATCCCAAAATTAATGAAGATCATTACTAGAATCCATGTTTGTCTCATT
451 TGTGTTTATAGTGCCTAAT-CCAAAATTAATGAAGATCATTACTAGAATCCATGTTTGTCTTATT
* *
900327 TGAGGCACGAACTTAGACTTTACAAAAATTGGTGGAAAGAAAGCCTTTTTTGCAAACCAAAGCAT
515 TGAGGCATGAACTTAGACTTTAC-AAAATTGGTGG-AAGAAAGCCTTTCTTGCAAACCAAAGCAT
* *
900392 TAATATCGTCTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATAGGGATC
578 TAATATCGTCTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATAGCGATT
* * * * *
900457 AGCATGACTCTTCATGTTTATCTTATTTAAGAGAAACTTTCATTCTATCAAAATGGTGGTAAGAA
643 AGCATGACTATTCATGTTTGTCTTATTTAAGAGAAACTTTAATTCTATCAAAATAGTGGAAAGAA
* *
900522 AAATGTTTCTTGTGATACCAAAGCATCAATGTCTTGTATTCTAATGAAGGGAATGTGTTCTTGGT
708 AACT-TTTCTTGTGACACCAAAGCATCAATGTCTTGTATTCTAATGAAGGGAATGTGTTCTTGGT
* * **
900587 TCCCAATCTTGAAAAGATTGGAGACTGTTACGATAATTGATATTTGTCATATTTAAGTGATTAAT
772 TCCCAATCTTGAAAAGAATGGAGACTGTTACGA-AATCGATGCTTGTCATATTTAAGTGATTAAT
* * * *
900652 TTTTATTTTATGAAAAATAGGGTAAAGAAAATATTTTCATGCTAAAGAAAATCATAAATATCATT
836 TTTTATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCTAAAGAAAATCATAAATATCATT
* *
900717 TATCCTAGTAAGAAGAATGTGTTTATAGTGCCTAATCCCT
901 TATCCTAATGAGAAGAATGTGTTTATAGTGCCTAATCCCT
* * * *
900757 AAATAAATGAAGATCATTGCT-AATCCATATTTATCTTATTTAAGGCATGAACTTAGACTTTACA
1 AAATAAATGAAGATCATTACTGAATCCATATTTGTCTCATTTGAGGCATGAACTTAGACTTTACA
* ** * * * *
900821 AAAA-TGGTAGGAAGAAAGCCTTT-TTGACGAAATGAAAGCGTTAATATCGTGTATCC-AGAGGA
66 AAAATTGGTGGGAAGAAAGCCTTTCTTG-CGAAACCAAAGCATCAATATCATGTATCCTA-ATGA
* * *
900883 GAAGACAATGTTTATGGTGCCTAATCTTGAAAAGAATACGGATTAGTATGACTATTTATATTTGT
129 GAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATAGGGATTAGTATGACTATTCATATTTGT
* **
900948 CTTATTTAAGAGATAAACTTTGATTCTATCAGTAACGGTGGAAAGAAAAGCTTTTCTTGCGACAC
194 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAA-CTTTTCTTGCGACAC
* * * *
901013 CAAAGCATCAATATCATATATCCTATTGAAGGGAATATGTTTTTGGTTCCCAATCTTGAAAAAAA
258 CAAAGCATCAATGTCATGTATCCTAATGAAGGGAATATGTTCTTGGTTCCCAATCTTGAAAAAAA
* * *
901078 TAAAGACTGTTGCGAGAATCAGTGCTTGCCTTAATTAAGGGAAGAACTTTAATTTTAAGGAAAAT
323 TAAAGACAGTTGCGAGAATCAGTGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAAT
* * *
901143 AGGACAAAAAAAGATTTTCATGCAAAAGAAAAGCATCAATAACATTTATGCTAATAAGGAAAATG
388 AGGGCAAAAAAAGATTTTCATGCAAAAGAAAAGCATCAGTAACATTTATGCTAATGAGGAAAATG
* * *
901208 TGTTTATAATGCCTAATCTCAAAATTAATGACGATCATTACTAGAATCTATGTTTGTCTTATTTG
453 TGTTTATAGTGCCTAATC-CAAAATTAATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTG
* * *
901273 AGGCTTGAACTTAGATTTTACTAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAACTAAAGCATT
517 AGGCATGAACTTAGACTTTAC-AAAATTGGT-GGAAGAAAGCCTTTCTTGC-AAACCAAAGCATT
*
901338 AATATCGTCTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATAGCAATTA
579 AATATCGTCTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATAGCGATTA
*
901403 GCATGACTATTCATGTTTGTCTTATTTAAGAGAGAAACTTTAATTCTATCAAAAATAGTAGAAAG
644 GCATGACTATTCATGTTTGTCTTATTT-A-AGAGAAACTTTAATTCTATC-AAAATAGTGGAAAG
* * *
901468 AAAACCTTTTCTTGCGACACTAAAGCATCAATGTCTTGTATTCTAATAAAGGGAATGTGTTCTTG
706 AAAA-CTTTTCTTGTGACACCAAAGCATCAATGTCTTGTATTCTAATGAAGGGAATGTGTTCTTG
* *
901533 GTTCCCAATCTTG-AAAGAATGGAGACTGTTACGAGATCGATGCTTGTCATATTTAAGTGATGAA
770 GTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAAATCGATGCTTGTCATATTTAAGTGATTAA
* *
901597 TTTTTATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCACGCTAAAGAAAATCATTAATATCAT
835 TTTTTATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCTAAAGAAAATCATAAATATCAT
* * * * * *
901662 TTATCTTAATGAGGAGAATGTGCTTATAGAGCCTAATCACA
900 TTATCCTAATGAGAAGAATGTGTTTATAGTGCCTAATCCCT
* * * * * *
901703 AAATGAATGAAGATCATTATTGGAATCCTTGTTTGTCTCTTTTGAGGCATGAACTTAGAGTTTAC
1 AAATAAATGAAGATCATTACT-GAATCCATATTTGTCTCATTTGAGGCATGAACTTAGACTTTAC
* *
901768 AAAAATTGGTGGGAAG-AAGACCTTTCTTG-TAAACCAAAGCATCAACATCATGTATCCTAATGA
65 AAAAATTGGTGGGAAGAAAG-CCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA
* * * *
901831 GAAGACTATGTTTATGGTGCCTAATCTTGAAAAAAAAAGGAGATTAGTATGACTATTCATGTTTC
129 GAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATAGG-GATTAGTATGACTATTCATATTTG
* * **
901896 TCTTATTTAAGAGGCAAACTTTGATTCTATTAAAAATAGTGGAAAGAAAA
193 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAA
901946 ACTTCAATGA
Statistics
Matches: 1824, Mismatches: 270, Indels: 81
0.84 0.12 0.04
Matches are distributed among these distances:
942 75 0.04
943 8 0.00
944 243 0.13
945 359 0.20
946 360 0.20
947 88 0.05
948 191 0.10
949 309 0.17
950 33 0.02
951 3 0.00
952 129 0.07
953 26 0.01
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.33
Consensus pattern (940 bp):
AAATAAATGAAGATCATTACTGAATCCATATTTGTCTCATTTGAGGCATGAACTTAGACTTTACA
AAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGA
AGACTATGTTTATGGTGCCTAATCTTGAAAAGAATAGGGATTAGTATGACTATTCATATTTGTCT
TATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACTTTTCTTGCGACACCAA
AGCATCAATGTCATGTATCCTAATGAAGGGAATATGTTCTTGGTTCCCAATCTTGAAAAAAATAA
AGACAGTTGCGAGAATCAGTGCTTGCCTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGG
GCAAAAAAAGATTTTCATGCAAAAGAAAAGCATCAGTAACATTTATGCTAATGAGGAAAATGTGT
TTATAGTGCCTAATCCAAAATTAATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGC
ATGAACTTAGACTTTACAAAATTGGTGGAAGAAAGCCTTTCTTGCAAACCAAAGCATTAATATCG
TCTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATAGCGATTAGCATGAC
TATTCATGTTTGTCTTATTTAAGAGAAACTTTAATTCTATCAAAATAGTGGAAAGAAAACTTTTC
TTGTGACACCAAAGCATCAATGTCTTGTATTCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCT
TGAAAAGAATGGAGACTGTTACGAAATCGATGCTTGTCATATTTAAGTGATTAATTTTTATTTTA
AGGAAAATAGGGCAAAGAAAAGATTTTCATGCTAAAGAAAATCATAAATATCATTTATCCTAATG
AGAAGAATGTGTTTATAGTGCCTAATCCCT
Found at i:902723 original size:13 final size:13
Alignment explanation
Indices: 902705--902730 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
902695 CAATTTTTTG
902705 TGTATCGATACAT
1 TGTATCGATACAT
902718 TGTATCGATACAT
1 TGTATCGATACAT
902731 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:903615 original size:30 final size:30
Alignment explanation
Indices: 903565--903678 Score: 115
Period size: 31 Copynumber: 3.8 Consensus size: 30
903555 ACAAAAAGGG
* *
903565 TGGCATTCCTTCTCTAAAGTCCATGACTCAA
1 TGGCATCCCTTTTC-AAAGTCCATGACTCAA
* *
903596 TGGCATCCCTTTTCAAAGTCCACGACTCAT
1 TGGCATCCCTTTTCAAAGTCCATGACTCAA
* * *
903626 TGGCA-CCTCTCTTCCAAAGTCTATAACTCAA
1 TGGCATCC-CT-TTTCAAAGTCCATGACTCAA
*
903657 TGGCACCCCTTTT-AAAGTCCAT
1 TGGCATCCCTTTTCAAAGTCCAT
903679 AGCTTCATGG
Statistics
Matches: 69, Mismatches: 11, Indels: 8
0.78 0.12 0.09
Matches are distributed among these distances:
29 10 0.14
30 23 0.33
31 34 0.49
32 2 0.03
ACGTcount: A:0.25, C:0.32, G:0.12, T:0.31
Consensus pattern (30 bp):
TGGCATCCCTTTTCAAAGTCCATGACTCAA
Found at i:903756 original size:30 final size:30
Alignment explanation
Indices: 903579--903759 Score: 104
Period size: 30 Copynumber: 6.0 Consensus size: 30
903569 ATTCCTTCTC
*
903579 TAAAGTCCATGAC-TCAATGGCATCCC-TTTT
1 TAAAGTCCATAACTTC-ATGGCA-CCCTTTTT
* ** * *
903609 CAAAGTCCACGAC-TCATTGGCACCTCTCTTC
1 TAAAGTCCATAACTTCA-TGGCACC-CTTTTT
* * *
903640 CAAAGTCTATAAC-TCAATGGCACCC-CTTT
1 TAAAGTCCATAACTTC-ATGGCACCCTTTTT
* **
903669 TAAAGTCCATAGCTTCATGGCACTTTTTTT
1 TAAAGTCCATAACTTCATGGCACCCTTTTT
* * * *
903699 TTAAGCCCACAACTTCGTGGCATCCCTTTTT
1 TAAAGTCCATAACTTCATGGCA-CCCTTTTT
*
903730 TCAAGTCCATAAC-TCTATGGCACCCTTTTT
1 TAAAGTCCATAACTTC-ATGGCACCCTTTTT
903760 CCTTTTAAGT
Statistics
Matches: 118, Mismatches: 25, Indels: 16
0.74 0.16 0.10
Matches are distributed among these distances:
29 23 0.19
30 52 0.44
31 42 0.36
32 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.12, T:0.34
Consensus pattern (30 bp):
TAAAGTCCATAACTTCATGGCACCCTTTTT
Found at i:903795 original size:33 final size:34
Alignment explanation
Indices: 903664--904090 Score: 288
Period size: 34 Copynumber: 13.0 Consensus size: 34
903654 CAATGGCACC
* * *
903664 CCTTTTAAAGTCCATAGCTTCATGGCA--CTTTTT
1 CCTTTT-AAGTCCACAACTTCGTGGCACCCTTTTT
*
903697 --TTTTAAGCCCACAACTTCGTGGCATCCC--TTT
1 CCTTTTAAGTCCACAACTTCGTGGCA-CCCTTTTT
* * *
903728 --TTTCAAGTCCATAAC-TCTATGGCACCCTTTTT
1 CCTTTTAAGTCCACAACTTC-GTGGCACCCTTTTT
*
903760 CCTTTTAAGTCCACGACTTCGTGGCA-CCTTTTT
1 CCTTTTAAGTCCACAACTTCGTGGCACCCTTTTT
* * * * *
903793 CC-TTCACGTCCACAACTCCATGGCACTC-TTTT
1 CCTTTTAAGTCCACAACTTCGTGGCACCCTTTTT
* * * *
903825 CC-TTTAAG-CCTACAAGTCCATGGCACCCTTTTA
1 CCTTTTAAGTCC-ACAACTTCGTGGCACCCTTTTT
* *
903858 CTTTTTAAGTCCATAACTTCGTGGCA-CCTTTTT
1 CCTTTTAAGTCCACAACTTCGTGGCACCCTTTTT
* * *
903891 -CTTTTAAAGTCCGCAACTTTGCGGCACCCTTTTT
1 CCTTTT-AAGTCCACAACTTCGTGGCACCCTTTTT
*
903925 -CTTTTAAGTCCACAAC-ACTGTGGCACCCTTTTT
1 CCTTTTAAGTCCACAACTTC-GTGGCACCCTTTTT
** * *
903958 -CAATTAAGTCCTCAAC-TCTGTGGCACCC-TTTC
1 CCTTTTAAGTCCACAACTTC-GTGGCACCCTTTTT
* * * ** *
903990 CCTTTTAAGCCCATAACTCCGT-GCTTTCTTTTTT
1 CCTTTTAAGTCCACAACTTCGTGGC-ACCCTTTTT
904024 CCTTTTAAGTCCACAAC-TCTGTGGCACCCTTTTT
1 CCTTTTAAGTCCACAACTTC-GTGGCACCCTTTTT
* * *
904058 CCTTTTAAGTCCATAACTCCATGGCACCCTTTT
1 CCTTTTAAGTCCACAACTTCGTGGCACCCTTTT
904091 AAAGTCCATA
Statistics
Matches: 308, Mismatches: 62, Indels: 47
0.74 0.15 0.11
Matches are distributed among these distances:
30 21 0.07
31 26 0.08
32 55 0.18
33 99 0.32
34 100 0.32
35 7 0.02
ACGTcount: A:0.19, C:0.31, G:0.12, T:0.38
Consensus pattern (34 bp):
CCTTTTAAGTCCACAACTTCGTGGCACCCTTTTT
Found at i:903817 original size:32 final size:32
Alignment explanation
Indices: 903729--904123 Score: 149
Period size: 33 Copynumber: 12.1 Consensus size: 32
903719 CATCCCTTTT
* *
903729 TTCAAGTCCATAACTCTATGGCACCCTTTTTCC
1 TTCAAGTCCACAACTCCATGGCA-CCTTTTTCC
* * * *
903762 TTTTAAGTCCACGACTTCGTGGCACCTTTTTCC
1 -TTCAAGTCCACAACTCCATGGCACCTTTTTCC
*
903795 TTCACGTCCACAACTCCATGGCA-CTCTTTTCC
1 TTCAAGTCCACAACTCCATGGCACCT-TTTTCC
* * * *
903827 TTTAAG-CCTACAAGTCCATGGCACCCTTTTACTT
1 TTCAAGTCC-ACAACTCCATGGCA-CCTTTTTC-C
* * * * *
903861 TTTAAGTCCATAACTTCGTGGCACCTTTTTCTT
1 TTCAAGTCCACAACTCCATGGCACCTTTTTC-C
* * **** *
903894 TTAAAGTCCGCAACTTTGCGGCACCCTTTTTCT
1 TTCAAGTCCACAACTCCATGGCA-CCTTTTTCC
* * ** *
903927 TTTAAGTCCACAACACTGTGGCACCCTTTTTCAA
1 TTCAAGTCCACAACTCCATGGCA-CCTTTTTC-C
* ** * *
903961 TT-AAGTCCTCAACTCTGTGGCACCCTTTCCC
1 TTCAAGTCCACAACTCCATGGCACCTTTTTCC
* * * * * *
903992 TTTTAAGCCCATAACTCCGT-GCTTTCTTTTTTCC
1 -TTCAAGTCCACAACTCCATGGC--ACCTTTTTCC
* **
904026 TTTTAAGTCCACAACTCTGTGGCACCCTTTTTCC
1 -TTCAAGTCCACAACTCCATGGCA-CCTTTTTCC
* * *
904060 TTTTAAGTCCATAACTCCATGGCACC--CTT--
1 -TTCAAGTCCACAACTCCATGGCACCTTTTTCC
* * * *
904089 TTAAAGTCCATAACTCCGTGACACCTTTTTCC
1 TTCAAGTCCACAACTCCATGGCACCTTTTTCC
904121 TTC
1 TTC
904124 TTTCAAGCCT
Statistics
Matches: 284, Mismatches: 59, Indels: 38
0.75 0.15 0.10
Matches are distributed among these distances:
28 22 0.08
30 2 0.01
31 6 0.02
32 53 0.19
33 100 0.35
34 97 0.34
35 4 0.01
ACGTcount: A:0.20, C:0.32, G:0.11, T:0.37
Consensus pattern (32 bp):
TTCAAGTCCACAACTCCATGGCACCTTTTTCC
Found at i:903824 original size:66 final size:67
Alignment explanation
Indices: 903671--904090 Score: 327
Period size: 66 Copynumber: 6.4 Consensus size: 67
903661 ACCCCTTTTA
* * *
903671 AAGTCCATAGCTTCATGGCA--CTTTTT--TTTTAAGCCCACAACTTCGTGGCATCCC-TTTT--
1 AAGTCCATAACTCCATGGCACCCTTTTTCCTTTTAAGTCCACAACTTCGTGGCA-CCCTTTTTCC
*
903729 TTC
65 TTT
* *
903732 AAGTCCATAACTCTATGGCACCCTTTTTCCTTTTAAGTCCACGACTTCGTGGCA-CCTTTTTCCT
1 AAGTCCATAACTCCATGGCACCCTTTTTCCTTTTAAGTCCACAACTTCGTGGCACCCTTTTTCCT
*
903796 TC
66 TT
* * * * * * *
903798 ACGTCCACAACTCCATGGCACTC-TTTTCC-TTTAAG-CCTACAAGTCCATGGCACCCTTTTACT
1 AAGTCCATAACTCCATGGCACCCTTTTTCCTTTTAAGTCC-ACAACTTCGTGGCACCCTTTTTC-
*
903860 TTTT
64 CTTT
* * * * * *
903864 AAGTCCATAACTTCGTGGCA-CCTTTTT-CTTTTAAAGTCCGCAACTTTGCGGCACCCTTTTTCT
1 AAGTCCATAACTCCATGGCACCCTTTTTCCTTTT-AAGTCCACAACTTCGTGGCACCCTTTTTCC
903927 TTT
65 TTT
* * ** ** * *
903930 AAGTCCACAACACTGTGGCACCCTTTTT-CAATTAAGTCCTCAAC-TCTGTGGCACCC-TTTCCC
1 AAGTCCATAACTCCATGGCACCCTTTTTCCTTTTAAGTCCACAACTTC-GTGGCACCCTTTTTCC
903992 TTTT
65 -TTT
* * ** *
903996 AAGCCCATAACTCCGT-GCTTTCTTTTTTCCTTTTAAGTCCACAAC-TCTGTGGCACCCTTTTTC
1 AAGTCCATAACTCCATGGC-ACCCTTTTTCCTTTTAAGTCCACAACTTC-GTGGCACCCTTTTTC
904059 CTTTT
64 C-TTT
904064 AAGTCCATAACTCCATGGCACCCTTTT
1 AAGTCCATAACTCCATGGCACCCTTTT
904091 AAAGTCCATA
Statistics
Matches: 283, Mismatches: 55, Indels: 35
0.76 0.15 0.09
Matches are distributed among these distances:
61 17 0.06
63 10 0.04
64 20 0.07
65 44 0.16
66 106 0.37
67 54 0.19
68 30 0.11
69 2 0.01
ACGTcount: A:0.20, C:0.31, G:0.12, T:0.38
Consensus pattern (67 bp):
AAGTCCATAACTCCATGGCACCCTTTTTCCTTTTAAGTCCACAACTTCGTGGCACCCTTTTTCCT
TT
Found at i:903825 original size:65 final size:64
Alignment explanation
Indices: 903666--903856 Score: 178
Period size: 64 Copynumber: 3.0 Consensus size: 64
903656 ATGGCACCCC
* * * *
903666 TTTTAAAGTCCATAGCTTCATGGCACT-TTTT--TTTTAAGCCCACAACTTCGTGGCATCCCTT
1 TTTTCAAGTCCACAACTCCATGGCACTCTTTTCCTTTTAAGCCCACAACTTCGTGGCATCCCTT
* * * * * *
903727 TTTTCAAGTCCATAACTCTATGGCACCCTTTTTCCTTTTAAGTCCACGACTTCGTGGCA-CCTTT
1 TTTTCAAGTCCACAACTCCATGGCACTC-TTTTCCTTTTAAGCCCACAACTTCGTGGCATCCCTT
* * * * *
903791 TTCCTTCACGTCCACAACTCCATGGCACTCTTTTCC-TTTAAGCCTACAAGTCCATGGCA-CCCT
1 TT--TTCAAGTCCACAACTCCATGGCACTCTTTTCCTTTTAAGCCCACAACTTCGTGGCATCCCT
903854 T
64 T
903855 TT
1 TT
903857 ACTTTTTAAG
Statistics
Matches: 105, Mismatches: 19, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
61 22 0.21
63 4 0.04
64 29 0.28
65 28 0.27
66 22 0.21
ACGTcount: A:0.20, C:0.31, G:0.12, T:0.37
Consensus pattern (64 bp):
TTTTCAAGTCCACAACTCCATGGCACTCTTTTCCTTTTAAGCCCACAACTTCGTGGCATCCCTT
Found at i:904115 original size:27 final size:27
Alignment explanation
Indices: 904058--904118 Score: 86
Period size: 28 Copynumber: 2.2 Consensus size: 27
904048 CACCCTTTTT
*
904058 CCTTTTAAGTCCATAACTCCATGGCAC
1 CCTTTTAAGTCCATAACTCCATGACAC
*
904085 CCTTTTAAAGTCCATAACTCCGTGACAC
1 CCTTTT-AAGTCCATAACTCCATGACAC
*
904113 CTTTTT
1 CCTTTT
904119 CCTTCTTTCA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 6 0.20
28 24 0.80
ACGTcount: A:0.25, C:0.31, G:0.10, T:0.34
Consensus pattern (27 bp):
CCTTTTAAGTCCATAACTCCATGACAC
Found at i:904277 original size:64 final size:61
Alignment explanation
Indices: 904201--904625 Score: 285
Period size: 64 Copynumber: 6.6 Consensus size: 61
904191 AAGCCCACGT
* * *
904201 AAGTCGATGGCAACCCTTTTCTATAGCCTACACAAGTCGGTGGCAACCCTTTTAGACCTGACAC
1 AAGTCGGTGGCAACCC--TTCTAAAGCCTACACAAGTCGGTGGCAACCCTTTTAAACCT-ACAC
* * * * * *
904265 AAGTCGGTGGCAACCTTTCAAAAGCCTACATAAGTCAGTGGCAACCCTTCTCTAAAGCTCACAT
1 AAGTCGGTGGCAACCCTTCTAAAGCCTACACAAGTCGGTGGCAACCCTT-T-TAAACCT-ACAC
* * * *
904329 AAGTCGGAGGCAACCCTTCTAAAGCCTACCCAAGTAGGTGGCAACCTTTCTTTAAAGCCTACAC
1 AAGTCGGTGGCAACCCTTCTAAAGCCTACACAAGTCGGTGGCAACC-CT-TTTAAA-CCTACAC
* * *
904393 AAGTCGGTGGCAACCCTTCTGAAGCCCACACAAGTCGGTGGCAACCCTTCTCTAAAGCCCACAC
1 AAGTCGGTGGCAACCCTTCTAAAGCCTACACAAGTCGGTGGCAACCCTT-T-TAAA-CCTACAC
* ** ** * * * * *
904457 AGGTTAGTGATAACCCTTCCTTAAACCCCACAAAAGTCGGTGACAACCCTTCTCTAAAGCCCACA
1 AAGTCGGTGGCAACCCTT-C-TAAAGCCTACACAAGTCGGTGGCAACCCTT-T-TAAA-CCTACA
904522 C
61 C
* * * * * * * * * *
904523 ATGTCGATCGTAATCCTTCTCTAAAGTCC-CCACAAGTCGGTGGCAACCCATCTAAAGCCCACCC
1 AAGTCGGTGGCAA-CCCT-TCTAAAG-CCTACACAAGTCGGTGGCAACCCTTTTAAA-CCTACAC
* * * * *
904587 AAATTGGTAGCAACCCTTCTGAAGCCCACACAAGTCGGT
1 AAGTCGGTGGCAACCCTTCTAAAGCCTACACAAGTCGGT
904626 CACACAAGTC
Statistics
Matches: 289, Mismatches: 59, Indels: 28
0.77 0.16 0.07
Matches are distributed among these distances:
61 2 0.01
62 47 0.16
63 6 0.02
64 151 0.52
65 5 0.02
66 71 0.25
67 6 0.02
68 1 0.00
ACGTcount: A:0.29, C:0.32, G:0.18, T:0.22
Consensus pattern (61 bp):
AAGTCGGTGGCAACCCTTCTAAAGCCTACACAAGTCGGTGGCAACCCTTTTAAACCTACAC
Found at i:904308 original size:95 final size:94
Alignment explanation
Indices: 904190--904962 Score: 333
Period size: 95 Copynumber: 7.9 Consensus size: 94
904180 TTTTTCATCT
* * *
904190 AAAGCCCACGTAAGTCGATGGCAACCCTTTTCTATAGCCTACACAAGTCGGTGGCAACCCTTTTA
1 AAAGCCTACATAAGTCG-TGGCAACCCTTTTCTA-AGCCTACACAAGTCGGTGGCAACCCTTCTA
* *
904255 GA-CCTGACACAAGTCGGTGGCAACCTTTC-A
64 AAGCCT-ACACAAGTAGGTGGCAACCTTTCTA
* * *
904285 AAAGCCTACATAAGTCAGTGGCAACCCTTCTCTAAAG-CTCACATAAGTCGGAGGCAACCCTTCT
1 AAAGCCTACATAAGTC-GTGGCAACCCTTTTCT-AAGCCT-ACACAAGTCGGTGGCAACCCTTCT
* *
904349 AAAGCCTACCCAAGTAGGTGGCAACCTTTCTTT
63 AAAGCCTACACAAGTAGGTGGCAACCTTTC-TA
* *
904382 AAAGCCTACACAAGTCGGTGGCAACCC--TTCTGAAGCCCACACAAGTCGGTGGCAACCCTTCTC
1 AAAGCCTACATAAGTC-GTGGCAACCCTTTTCT-AAGCCTACACAAGTCGGTGGCAACCC-T-TC
* * ** * *
904445 TAAAGCCCACACAGGTTA-GTGATAACCCTTCCTT
62 TAAAGCCTACACAAG-TAGGTGGCAA-CCTTTCTA
* * * * * * * * * * *
904479 AAACCCCACAAAAGTCGGTGACAACCCTTCTCTAAAGCCCACACATGTCGATCGTAATCCTTCTC
1 AAAGCCTACATAAGTC-GTGGCAACCCTTTTCT-AAGCCTACACAAGTCGGTGGCAA-CCCT-TC
* * **
904544 TAAAGTCC-CCACAAGTCGGTGGCAACCCATCT-
62 TAAAG-CCTACACAAGTAGGTGGCAACCTTTCTA
* * * * * * * *
904576 AAAGCCCACCCA-AATTGGTAGCAACCCTTCTGAAGCCCACACAAGTCGGTCACACAAGTCAGTG
1 AAAGCCTA--CATAAGTCGTGGCAACCCTT-T-------TC-TAAG-C-CT-ACACAAGTCGGTG
* * * *
904640 GCAACCATTCTAAAGCCCACACAAGTTGGTAGCAACCATTATCT-
52 GCAACCCTTCTAAAGCCTACACAAGTAGGTGGCAACC-TT-TCTA
* * *
904684 AAAG-CTCACAGAAGTTGGTGGCAACCC--TTCTAAAGCCCACACAAGTCGGTGGCAACTCCCTT
1 AAAGCCT-ACATAAG-TCGTGGCAACCCTTTTCT-AAGCCTACACAAGTCGGTGGCAA--CCCTT
* * *
904746 C-AAAACCCACATAAGTCA-GTGGCAACTCTTTCT-
61 CTAAAGCCTACACAAGT-AGGTGGCAAC-CTTTCTA
* * ** ** * *
904779 AAAGCCCACATAAGTCGGTGGCAACCTTCTTTAAAAGCCTACACAAGTCGGTGATAACTCTCTCA
1 AAAGCCTACATAAGTC-GTGGCAACCCT-TTTCTAAGCCTACACAAGTCGGTGGCAACCCT-TCT
* * *
904844 AAAGCCCACACAAG-ACAGTGGCAACCCTTCT-
63 AAAGCCTACACAAGTA-GGTGGCAACCTTTCTA
* * ** * * *
904875 AAAGCCCACACAAGTCAGTGGCAACCCCCTTCAAAAGCCCACACAAGTCGGTGGCAACTC-TCTG
1 AAAGCCTACATAAGTC-GTGGCAACCCTTTTC-TAAGCCTACACAAGTCGGTGGCAACCCTTCT-
* *
904939 AAAAGCCCACACAAGTCGGTGGCA
63 -AAAGCCTACACAAGTAGGTGGCA
904963 TTTTCTTCTA
Statistics
Matches: 523, Mismatches: 101, Indels: 107
0.72 0.14 0.15
Matches are distributed among these distances:
94 5 0.01
95 142 0.27
96 105 0.20
97 133 0.25
98 21 0.04
99 43 0.08
100 4 0.01
105 7 0.01
106 26 0.05
107 6 0.01
108 31 0.06
ACGTcount: A:0.31, C:0.32, G:0.18, T:0.20
Consensus pattern (94 bp):
AAAGCCTACATAAGTCGTGGCAACCCTTTTCTAAGCCTACACAAGTCGGTGGCAACCCTTCTAAA
GCCTACACAAGTAGGTGGCAACCTTTCTA
Found at i:904472 original size:33 final size:33
Alignment explanation
Indices: 904187--904955 Score: 306
Period size: 33 Copynumber: 23.6 Consensus size: 33
904177 ACTTTTTTCA
** * *
904187 TCTAAAGCCCACGTAAGTC-GATGGCAACCCTTT
1 TCTAAAGCCCACACAAGTCAG-TGACAACCCTTC
* * * *
904220 TCTATAGCCTACACAAGTCGGTGGCAACCCTT-
1 TCTAAAGCCCACACAAGTCAGTGACAACCCTTC
* * * *
904252 T-TAGA-CCTGACACAAGTCGGTGGCAA-CCTT-
1 TCTAAAGCC-CACACAAGTCAGTGACAACCCTTC
* * * *
904282 TCAAAAGCCTACATAAGTCAGTGGCAACCCTTC
1 TCTAAAGCCCACACAAGTCAGTGACAACCCTTC
* * * * *
904315 TCTAAAGCTCACATAAGTCGGAGGCAACCC-T-
1 TCTAAAGCCCACACAAGTCAGTGACAACCCTTC
* * * *
904346 TCTAAAGCCTACCCAAGT-AGGTGGCAACCTTTC
1 TCTAAAGCCCACACAAGTCA-GTGACAACCCTTC
* * * *
904379 TTTAAAGCCTACACAAGTCGGTGGCAACCC-T-
1 TCTAAAGCCCACACAAGTCAGTGACAACCCTTC
* * *
904410 TCTGAAGCCCACACAAGTCGGTGGCAACCCTTC
1 TCTAAAGCCCACACAAGTCAGTGACAACCCTTC
* * *
904443 TCTAAAGCCCACACAGGTTAGTGATAACCCTTC
1 TCTAAAGCCCACACAAGTCAGTGACAACCCTTC
* * *
904476 -CTTAAACCCCACAAAAGTCGGTGACAACCCTTC
1 TC-TAAAGCCCACACAAGTCAGTGACAACCCTTC
* * *
904509 TCTAAAGCCCACACATGTC-GATCG-TAATCCTTC
1 TCTAAAGCCCACACAAGTCAG-T-GACAACCCTTC
* * *
904542 TCTAAAGTCCC-CACAAGTCGGTGGCAACCC--A
1 TCTAAAG-CCCACACAAGTCAGTGACAACCCTTC
* * **
904573 TCTAAAGCCCACCCAAATTGGT-AGCAACCC-T-
1 TCTAAAGCCCACACAAGTCAGTGA-CAACCCTTC
* * * ***
904604 TCTGAAGCCCACACAAGTCGGTCACACAAGTCAGTGGCAACCAT
1 TCTAAAGCCCACACAAGTCAGT--GACAA--C-----C--CTTC
** * *
904648 TCTAAAGCCCACACAAGTTGGT-AGCAACCATTA
1 TCTAAAGCCCACACAAGTCAGTGA-CAACCCTTC
* * ** *
904681 TCTAAAGCTCACAGAAGTTGGTGGCAACCC-T-
1 TCTAAAGCCCACACAAGTCAGTGACAACCCTTC
* * *
904712 TCTAAAGCCCACACAAGTCGGTGGCAACTCCCT-
1 TCTAAAGCCCACACAAGTCAGTGACAAC-CCTTC
* * * *
904745 TC-AAAACCCACATAAGTCAGTGGCAACTCTT-
1 TCTAAAGCCCACACAAGTCAGTGACAACCCTTC
* * *
904776 TCTAAAGCCCACATAAGTCGGTGGCAA-CCTTC
1 TCTAAAGCCCACACAAGTCAGTGACAACCCTTC
* * * * *
904808 TTTAAAAGCCTACACAAGTCGGTGATAACTC-TC
1 TCT-AAAGCCCACACAAGTCAGTGACAACCCTTC
* * *
904841 TCAAAAGCCCACACAAGACAGTGGCAACCC-T-
1 TCTAAAGCCCACACAAGTCAGTGACAACCCTTC
* *
904872 TCTAAAGCCCACACAAGTCAGTGGCAACCC-CC
1 TCTAAAGCCCACACAAGTCAGTGACAACCCTTC
* * * *
904904 TTCAAAAGCCCACACAAGTCGGTGGCAACTC-TC
1 -TCTAAAGCCCACACAAGTCAGTGACAACCCTTC
**
904937 TGAAAAGCCCACACAAGTC
1 TCTAAAGCCCACACAAGTC
904956 GGTGGCATTT
Statistics
Matches: 587, Mismatches: 103, Indels: 93
0.75 0.13 0.12
Matches are distributed among these distances:
30 10 0.02
31 185 0.32
32 103 0.18
33 251 0.43
34 9 0.02
35 2 0.00
40 2 0.00
41 1 0.00
42 4 0.01
44 20 0.03
ACGTcount: A:0.31, C:0.32, G:0.17, T:0.20
Consensus pattern (33 bp):
TCTAAAGCCCACACAAGTCAGTGACAACCCTTC
Found at i:904762 original size:32 final size:33
Alignment explanation
Indices: 904626--904962 Score: 302
Period size: 32 Copynumber: 10.5 Consensus size: 33
904616 ACAAGTCGGT
* * *
904626 CACACAAGTCAGTGGCAA--CCATTCTAAAGCC
1 CACACAAGTCGGTGGCAACTCCCTTCAAAAGCC
* * ** * *
904657 CACACAAGTTGGTAGCAAC-CATTATCTAAAGCT
1 CACACAAGTCGGTGGCAACTCCCT-TCAAAAGCC
* * *
904690 CACAGAAGTTGGTGGCAA--CCCTTCTAAAGCC
1 CACACAAGTCGGTGGCAACTCCCTTCAAAAGCC
904721 CACACAAGTCGGTGGCAACTCCCTTCAAAA-CC
1 CACACAAGTCGGTGGCAACTCCCTTCAAAAGCC
* * * *
904753 CACATAAGTCAGTGGCAACT-CTTTCTAAAGCC
1 CACACAAGTCGGTGGCAACTCCCTTCAAAAGCC
* * *
904785 CACATAAGTCGGTGGCAAC-CTTCTTTAAAAGCC
1 CACACAAGTCGGTGGCAACTC-CCTTCAAAAGCC
* ** *
904818 TACACAAGTCGGTGATAACTCTC-TCAAAAGCC
1 CACACAAGTCGGTGGCAACTCCCTTCAAAAGCC
* * *
904850 CACACAAGACAGTGGCAA--CCCTTCTAAAGCC
1 CACACAAGTCGGTGGCAACTCCCTTCAAAAGCC
* *
904881 CACACAAGTCAGTGGCAACCCCCTTCAAAAGCC
1 CACACAAGTCGGTGGCAACTCCCTTCAAAAGCC
* *
904914 CACACAAGTCGGTGGCAACTCTC-TGAAAAGCC
1 CACACAAGTCGGTGGCAACTCCCTTCAAAAGCC
904946 CACACAAGTCGGTGGCA
1 CACACAAGTCGGTGGCA
904963 TTTTCTTCTA
Statistics
Matches: 254, Mismatches: 41, Indels: 21
0.80 0.13 0.07
Matches are distributed among these distances:
30 2 0.01
31 71 0.28
32 90 0.35
33 90 0.35
34 1 0.00
ACGTcount: A:0.33, C:0.31, G:0.18, T:0.18
Consensus pattern (33 bp):
CACACAAGTCGGTGGCAACTCCCTTCAAAAGCC
Found at i:904911 original size:96 final size:97
Alignment explanation
Indices: 904626--904962 Score: 373
Period size: 96 Copynumber: 3.5 Consensus size: 97
904616 ACAAGTCGGT
* * ** * *
904626 CACACAAGTCAGTGGCAAC-CAT-TCTAAAGCCCACACAAGTTGGTAGCAAC-CATTATCTAAAG
1 CACACAAGTCGGTGGCAACTC-TCTCAAAAGCCCACACAAGTCAGTGGCAACTC-CT-TCTAAAG
* * * *
904688 CTCACAGAAGTTGGTGGCAA--CCCTTCTAAAGCC
63 CCCACACAAGTCGGTGGCAACCCCCTTCAAAAGCC
* * *
904721 CACACAAGTCGGTGGCAACTCCCTTCAAAA-CCCACATAAGTCAGTGGCAACTCTTTCTAAAGCC
1 CACACAAGTCGGTGGCAACTCTC-TCAAAAGCCCACACAAGTCAGTGGCAACTCCTTCTAAAGCC
* ** *
904785 CACATAAGTCGGTGGCAACCTTCTTTAAAAGCC
65 CACACAAGTCGGTGGCAACCCCCTTCAAAAGCC
* ** *
904818 TACACAAGTCGGTGATAACTCTCTCAAAAGCCCACACAAGACAGTGGCAAC-CCTTCTAAAGCCC
1 CACACAAGTCGGTGGCAACTCTCTCAAAAGCCCACACAAGTCAGTGGCAACTCCTTCTAAAGCCC
*
904882 ACACAAGTCAGTGGCAACCCCCTTCAAAAGCC
66 ACACAAGTCGGTGGCAACCCCCTTCAAAAGCC
* *
904914 CACACAAGTCGGTGGCAACTCTCTGAAAAGCCCACACAAGTCGGTGGCA
1 CACACAAGTCGGTGGCAACTCTCTCAAAAGCCCACACAAGTCAGTGGCA
904963 TTTTCTTCTA
Statistics
Matches: 203, Mismatches: 32, Indels: 13
0.82 0.13 0.05
Matches are distributed among these distances:
95 42 0.21
96 108 0.53
97 53 0.26
ACGTcount: A:0.33, C:0.31, G:0.18, T:0.18
Consensus pattern (97 bp):
CACACAAGTCGGTGGCAACTCTCTCAAAAGCCCACACAAGTCAGTGGCAACTCCTTCTAAAGCCC
ACACAAGTCGGTGGCAACCCCCTTCAAAAGCC
Found at i:905276 original size:174 final size:174
Alignment explanation
Indices: 905081--905478 Score: 451
Period size: 174 Copynumber: 2.3 Consensus size: 174
905071 TTTTTCTTTC
* * * *
905081 TTAAGTCTAATATCGCTGGCCTTGAATAAGCATATCGACACCTTTATCGTTCTTCTCATGTTCAA
1 TTAAGTCCAATATCGCTGGCCTTGAATAAGCACATCGACACCTTTATCATTCTTCTCATCTTCAA
* * *
905146 GCCCAACGTCGCTAGCCTTAAATTAGCACATTGGCACTTTTGTCATCTTTAAGCCCAATATCGCT
66 GCCCAACGTCGCTAGCCTTAAATCAACACATTGGCACCTTTGTCATCTTTAAGCCCAATATCGCT
* * * * *
905211 -GGCTCTGAATTAGCATATTGGCACCATTATCATTTTTCTCATCT
131 AGCCT-TGAATAAGCATATCGACACCATTATCATTCTTCTCATCT
* * * * * * *
905255 TTAAGTCCAATGTCGCTGGCCTTGAATTAGCGCATTGGCACCTTTATCATTCTTTTCATCTTTAA
1 TTAAGTCCAATATCGCTGGCCTTGAATAAGCACATCGACACCTTTATCATTCTTCTCATCTTCAA
* * * * ***
905320 GTCCAATGTTGTTAGCCTTAAATCAATGTATTGGCACCTTTGTCATCTTTAAGCCCAATATCGCT
66 GCCCAACGTCGCTAGCCTTAAATCAACACATTGGCACCTTTGTCATCTTTAAGCCCAATATCGCT
* *
905385 AGCCTTGAATAAGCATATCGACATCTTTATCATTCTTCTCATCT
131 AGCCTTGAATAAGCATATCGACACCATTATCATTCTTCTCATCT
* * * * *
905429 TCAAG-CCTAATATCG-TCGGCCTTGAATCAGCACATTGGCACCTTTGTCAT
1 TTAAGTCC-AATATCGCT-GGCCTTGAATAAGCACATCGACACCTTTATCAT
905479 CTTTAAGCCT
Statistics
Matches: 188, Mismatches: 33, Indels: 6
0.83 0.15 0.03
Matches are distributed among these distances:
173 3 0.02
174 182 0.97
175 3 0.02
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.36
Consensus pattern (174 bp):
TTAAGTCCAATATCGCTGGCCTTGAATAAGCACATCGACACCTTTATCATTCTTCTCATCTTCAA
GCCCAACGTCGCTAGCCTTAAATCAACACATTGGCACCTTTGTCATCTTTAAGCCCAATATCGCT
AGCCTTGAATAAGCATATCGACACCATTATCATTCTTCTCATCT
Found at i:905283 original size:61 final size:61
Alignment explanation
Indices: 905183--905720 Score: 344
Period size: 61 Copynumber: 9.3 Consensus size: 61
905173 ACATTGGCAC
* * *
905183 TTTTGTCATCTTTAAGCCCAATATCGCTGG-CTCTGAATTAGCATATTGGCACCATTATCAT
1 TTTTCTCATCTTTAAGCCCAATATCGCTGGCCT-TGAATCAGCATATTGGCACCTTTATCAT
* * * **
905244 TTTTCTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATTAGCGCATTGGCACCTTTATCAT
1 TTTTCTCATCTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCAT
* * * * * * ***
905305 TCTTT-TCATCTTTAAGTCCAATGTTGTTAGCCTTAAATCAATGTATTGGCA-C-----C--
1 T-TTTCTCATCTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCAT
* * * * * *
905358 -TTTGTCATCTTTAAGCCCAATATCGCTAGCCTTGAATAAGCATATCGACATCTTTATCAT
1 TTTTCTCATCTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCAT
* * * *
905418 TCTTCTCATCTTCAAGCCTAATATCG-TCGGCCTTGAATCAGCACATTGGCA-C-----C--
1 TTTTCTCATCTTTAAGCCCAATATCGCT-GGCCTTGAATCAGCATATTGGCACCTTTATCAT
* * * *
905471 -TTTGTCATCTTTAAGCCTAATATTGCTAGCCTTGAATCAGCATATTGGCACCTTTATCAT
1 TTTTCTCATCTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCAT
* * ** * *** ** *
905531 TCTTCTCATCTTCAATTCCAATGTTATTGGCCTTGAATCAGCGCATTGGCACCTTTGTCA-
1 TTTTCTCATCTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCAT
* * * * *
905591 -----T--T-TTGAAGCCCAATATCGTTGGCCTTAAATCAGCATATTAGCATCTTTATCAT
1 TTTTCTCATCTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCAT
* * * * * *
905644 TCTTCTCATCTTCAAGCCCAATATCGCTAGCCATGGATCAACATATTGGCACCTTTATCAT
1 TTTTCTCATCTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCAT
* *
905705 TCTTCACATCTTTAAG
1 TTTTCTCATCTTTAAG
905721 TCTAATGTCA
Statistics
Matches: 369, Mismatches: 76, Indels: 64
0.72 0.15 0.13
Matches are distributed among these distances:
51 3 0.01
52 115 0.31
53 4 0.01
55 3 0.01
58 3 0.01
60 4 0.01
61 232 0.63
62 5 0.01
ACGTcount: A:0.24, C:0.25, G:0.14, T:0.37
Consensus pattern (61 bp):
TTTTCTCATCTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCAT
Found at i:905283 original size:113 final size:114
Alignment explanation
Indices: 905031--905309 Score: 294
Period size: 113 Copynumber: 2.5 Consensus size: 114
905021 ATTTCTTTCT
* * * * * * * * * * *
905031 AAGCCCAATGTCACTAGCCTTGAATCAACAAATTTGCACCTTTTTCTTTC-TTAAGTCTAATATC
1 AAGCCCAACGTCGCTAGCCTTAAATTAGCACATTGGCACCTTTATCATTCTTTAAGCCCAATATC
* * *
905095 GCTGGCCTTGAATAAGCATATCGACACCTTTATCGTTCTTCTCATGTTC
66 GCTGGCCTTGAATAAGCATATCGACACCATTATCATTCTTCTCATCTTC
* *
905144 AAGCCCAACGTCGCTAGCCTTAAATTAGCACATTGGCACTTTTGTCA-TCTTTAAGCCCAATATC
1 AAGCCCAACGTCGCTAGCCTTAAATTAGCACATTGGCACCTTTATCATTCTTTAAGCCCAATATC
* * * * *
905208 GCTGG-CTCTGAATTAGCATATTGGCACCATTATCATTTTTCTCATCTTT
66 GCTGGCCT-TGAATAAGCATATCGACACCATTATCATTCTTCTCATCTTC
* * * * *
905257 AAGTCCAATGTCGCTGGCCTTGAATTAGCGCATTGGCACCTTTATCATTCTTT
1 AAGCCCAACGTCGCTAGCCTTAAATTAGCACATTGGCACCTTTATCATTCTTT
905310 TCATCTTTAA
Statistics
Matches: 136, Mismatches: 27, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
112 4 0.03
113 127 0.93
114 5 0.04
ACGTcount: A:0.24, C:0.25, G:0.14, T:0.36
Consensus pattern (114 bp):
AAGCCCAACGTCGCTAGCCTTAAATTAGCACATTGGCACCTTTATCATTCTTTAAGCCCAATATC
GCTGGCCTTGAATAAGCATATCGACACCATTATCATTCTTCTCATCTTC
Found at i:905369 original size:113 final size:113
Alignment explanation
Indices: 905249--905665 Score: 523
Period size: 113 Copynumber: 3.7 Consensus size: 113
905239 ATCATTTTTC
* * * * ** *
905249 TCATCTTTAAGTCCAATGTCGCTGGCCTTGAATTAGCGCATTGGCACCTTTATCATTCTTTTCAT
1 TCATCTTTAAGCCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTTATCATTCTTCTCAT
* * * ** *
905314 CTTTAAGTCCAATGTTGTTAGCCTTAAATCAATGTATTGGCACCTTTG
66 CTTCAAGTCCAATGTTGTTGGCCTTGAATCAGCGCATTGGCACCTTTG
* * * *
905362 TCATCTTTAAGCCCAATATCGCTAGCCTTGAATAAGCATATCGACATCTTTATCATTCTTCTCAT
1 TCATCTTTAAGCCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTTATCATTCTTCTCAT
* * * *
905427 CTTCAAG-CCTAATATCGTCGGCCTTGAATCAGCACATTGGCACCTTTG
66 CTTCAAGTCC-AATGTTGTTGGCCTTGAATCAGCGCATTGGCACCTTTG
* *
905475 TCATCTTTAAGCCTAATATTGCTAGCCTTGAATCAGCATATTGGCACCTTTATCATTCTTCTCAT
1 TCATCTTTAAGCCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTTATCATTCTTCTCAT
* *
905540 CTTCAATTCCAATGTTATTGGCCTTGAATCAGCGCATTGGCACCTTTG
66 CTTCAAGTCCAATGTTGTTGGCCTTGAATCAGCGCATTGGCACCTTTG
* * * * *
905588 TCAT-TTTGAAGCCCAATATCGTTGGCCTTAAATCAGCATATTAGCATCTTTATCATTCTTCTCA
1 TCATCTTT-AAGCCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTTATCATTCTTCTCA
*
905652 TCTTCAAGCCCAAT
65 TCTTCAAGTCCAAT
905666 ATCGCTAGCC
Statistics
Matches: 260, Mismatches: 41, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
112 5 0.02
113 253 0.97
114 2 0.01
ACGTcount: A:0.24, C:0.25, G:0.14, T:0.37
Consensus pattern (113 bp):
TCATCTTTAAGCCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTTATCATTCTTCTCAT
CTTCAAGTCCAATGTTGTTGGCCTTGAATCAGCGCATTGGCACCTTTG
Found at i:905481 original size:226 final size:226
Alignment explanation
Indices: 905249--905704 Score: 605
Period size: 226 Copynumber: 2.0 Consensus size: 226
905239 ATCATTTTTC
* * * * *
905249 TCATCTTTAAGTCC-AATGTCGCTGGCCTTGAATTAGCGCATTGGCACCTTTATCATTCTTTTCA
1 TCATCTTTAAG-CCTAATATCGCTAGCCTTGAATCAGCACATTGGCACCTTTATCATTCTTCTCA
* * * *
905313 TCTTTAAGTCCAATGTTGTTAGCCTTAAATCAATGTATTGGCACCTTTGTCATCTTT-AAGCCCA
65 TCTTCAAGTCCAATGTTATTAGCCTTAAATCAACGCATTGGCACCTTTGTCAT-TTTGAAGCCCA
* *
905377 ATATCGCTAGCCTTGAATAAGCATATCGA-CATCTTTATCATTCTTCTCATCTTCAAGCCTAATA
129 ATATCGCTAGCCTTAAATAAGCATAT-GAGCATCTTTATCATTCTTCTCATCTTCAAGCCCAATA
* * * *
905441 TCG-TCGGCCTTGAATCAGCACATTGGCACCTTTG
193 TCGCT-AGCCATGAATCAACACATTGGCACCTTTA
* *
905475 TCATCTTTAAGCCTAATATTGCTAGCCTTGAATCAGCATATTGGCACCTTTATCATTCTTCTCAT
1 TCATCTTTAAGCCTAATATCGCTAGCCTTGAATCAGCACATTGGCACCTTTATCATTCTTCTCAT
* * * *
905540 CTTCAATTCCAATGTTATTGGCCTTGAATCAGCGCATTGGCACCTTTGTCATTTTGAAGCCCAAT
66 CTTCAAGTCCAATGTTATTAGCCTTAAATCAACGCATTGGCACCTTTGTCATTTTGAAGCCCAAT
* * * *
905605 ATCGTTGGCCTTAAATCAGCATATTAGCATCTTTATCATTCTTCTCATCTTCAAGCCCAATATCG
131 ATCGCTAGCCTTAAATAAGCATATGAGCATCTTTATCATTCTTCTCATCTTCAAGCCCAATATCG
* *
905670 CTAGCCATGGATCAACATATTGGCACCTTTA
196 CTAGCCATGAATCAACACATTGGCACCTTTA
905701 TCAT
1 TCAT
905705 TCTTCACATC
Statistics
Matches: 199, Mismatches: 27, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
225 6 0.03
226 192 0.96
227 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.37
Consensus pattern (226 bp):
TCATCTTTAAGCCTAATATCGCTAGCCTTGAATCAGCACATTGGCACCTTTATCATTCTTCTCAT
CTTCAAGTCCAATGTTATTAGCCTTAAATCAACGCATTGGCACCTTTGTCATTTTGAAGCCCAAT
ATCGCTAGCCTTAAATAAGCATATGAGCATCTTTATCATTCTTCTCATCTTCAAGCCCAATATCG
CTAGCCATGAATCAACACATTGGCACCTTTA
Found at i:905503 original size:52 final size:52
Alignment explanation
Indices: 905423--905535 Score: 156
Period size: 52 Copynumber: 2.2 Consensus size: 52
905413 ATCATTCTTC
* *
905423 TCATCTTCAAGCCTAATATCGTCGGCCTTGAATCAGCACATTGGCACCTTTG
1 TCATCTTCAAGCCTAATATCGTCAGCCTTGAATCAGCACATTGGCACCTTTA
* * *
905475 TCATCTTTAAGCCTAATATTG-CTAGCCTTGAATCAGCATATTGGCACCTTTA
1 TCATCTTCAAGCCTAATATCGTC-AGCCTTGAATCAGCACATTGGCACCTTTA
905527 TCATTCTTC
1 TCA-TCTTC
905536 TCATCTTCAA
Statistics
Matches: 53, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
51 1 0.02
52 48 0.91
53 4 0.08
ACGTcount: A:0.24, C:0.27, G:0.14, T:0.35
Consensus pattern (52 bp):
TCATCTTCAAGCCTAATATCGTCAGCCTTGAATCAGCACATTGGCACCTTTA
Found at i:905739 original size:61 final size:61
Alignment explanation
Indices: 905618--905753 Score: 148
Period size: 61 Copynumber: 2.2 Consensus size: 61
905608 GTTGGCCTTA
* * * * *
905618 AATCAGCATATTAGCATCTTTATCATTCTTCTCATCTTCAAGCCCAATATCGCTAGCCATG
1 AATCAACATATTGGCACCTTTATCATTCTTCACATCTTCAAGCCCAATATCACTAGCCATG
* * * * * *
905679 GATCAACATATTGGCACCTTTATCATTCTTCACATCTTTAAGTCTAATGTCA-TTGACCATG
1 AATCAACATATTGGCACCTTTATCATTCTTCACATCTTCAAGCCCAATATCACTAG-CCATG
*
905740 AATCAACACATTGG
1 AATCAACATATTGG
905754 TACTCTTCTT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
60 2 0.03
61 59 0.97
ACGTcount: A:0.29, C:0.25, G:0.11, T:0.35
Consensus pattern (61 bp):
AATCAACATATTGGCACCTTTATCATTCTTCACATCTTCAAGCCCAATATCACTAGCCATG
Found at i:906372 original size:95 final size:94
Alignment explanation
Indices: 906209--906972 Score: 393
Period size: 97 Copynumber: 7.8 Consensus size: 94
906199 AAAGTCCACG
* * **
906209 TAAGTTGGTGGCAACCCTTTTCTATAGCCTACACAAGTCGGTGGCAACCCTTCTAGAGCTGACAC
1 TAAGTTGGTGGCAACCC-TTTCTAAAGCC-ACACAAGTCGGTGGCAACCCTTCTAAAGCCCACAC
906274 AAGTCGGTGGCAACCTTTC-AAAAGCCTACA
64 AAGTCGGTGGCAACCTTTCTAAAAGCCTACA
* * * * *
906304 TAAGTTAGTGGCAACCCTTCTCTAAAGCTCACATAAGTTGGAGGCAACCCTTCTAAAGCCCACCC
1 TAAGTTGGTGGCAACCCTT-TCTAAAGC-CACACAAGTCGGTGGCAACCCTTCTAAAGCCCACAC
* *
906369 AAGTCGGTGGCAACCTTTCTTTAAAGCGTACA
64 AAGTCGGTGGCAACCTTTC-TAAAAGCCTACA
* *
906401 CAAGTCGGTGGCAACCC-TTCTAAAGCCCACACAAGTCGGTGGCAACCCTTCTCTAAAGCCCACA
1 TAAGTTGGTGGCAACCCTTTCTAAAG-CCACACAAGTCGGTGGCAACCC-T-TCTAAAGCCCACA
** ** * * * *
906465 CAAGTTAGTGATAACCCTTCCTTAAACCCCACA
63 CAAGTCGGTGGCAA-CCTTTCTAAAAGCCTACA
* ** * * * * * * * *
906498 AAAGTCAGTGACAACCTTTCTCTAAAGCCCACACATGTCGATCGTAATACTTCTCTAAAGTCCCA
1 TAAGTTGGTGGCAACCCTT-TCTAAAG-CCACACAAGTCGGTGGCAA-CCCT-TCTAAAG-CCCA
* ** * *
906563 -ACAAGTCAGTGGCAACCCATCT-AAAGCCCACC
61 CACAAGTCGGTGGCAACCTTTCTAAAAGCCTACA
* * * * * * * *
906595 CAAATTGTTAGCAACCCTTCTGAAGCCCACACAAGTCGGTCACACAAGTCAGTGGCAACCATTCC
1 TAAGTTGGTGGCAACCCTT-T------C-TA-AAG-C---CACACAAGTCGGTGGCAACCCTTCT
* * * *
906660 ACAGCCCACACAAGTTGGTAGCAACCCTTCTCT-AAAGCC-CCA
53 AAAGCCCACACAAGTCGGTGGCAA-CCTT-TCTAAAAGCCTACA
* * * *
906702 TAAGTCGGTGGCAACTCCCTTCAAAAGCCCACACAAGTCGGTGGCAACTCCCTTCAAAAGCCCAC
1 TAAGTTGGTGGCAAC-CCTTTCTAAAG-CCACACAAGTCGGTGGCAA--CCCTTCTAAAGCCCAC
* **
906767 ATAAGTTAG-GGCAACTCTTTC-AAAAGCAC-ACA
62 ACAAGTCGGTGGCAAC-CTTTCTAAAAGC-CTACA
* * * * * * *
906799 TAAGTCGGTGGCAA-CATTATTTAAAAGCCTACACAAGTCGATGGTAACTCTCTCAAAAGCCCAC
1 TAAGTTGGTGGCAACCCTT-TCT-AAAGCC-ACACAAGTCGGTGGCAACCCT-TCTAAAGCCCAC
* * *
906863 ACAAGTCAGTGGCAACCCTTCT-AAAGCCCACA
62 ACAAGTCGGTGGCAACCTTTCTAAAAGCCTACA
* * * *
906895 CT-AGTTAGTGGCAACACCCTTCAAAAGCCCACACAAGTCGGTGGCAACTC-TCTGAAAAGCCCA
1 -TAAGTTGGTGGCAAC-CCTTTCTAAAG-CCACACAAGTCGGTGGCAACCCTTCT--AAAGCCCA
* *
906958 CATAATTCGGTGGCA
61 CACAAGTCGGTGGCA
906973 TTTTCTTCTA
Statistics
Matches: 516, Mismatches: 108, Indels: 89
0.72 0.15 0.12
Matches are distributed among these distances:
94 4 0.01
95 101 0.20
96 115 0.22
97 141 0.27
98 32 0.06
99 48 0.09
100 6 0.01
101 1 0.00
103 1 0.00
104 1 0.00
105 8 0.02
106 17 0.03
107 16 0.03
108 25 0.05
ACGTcount: A:0.31, C:0.31, G:0.17, T:0.21
Consensus pattern (94 bp):
TAAGTTGGTGGCAACCCTTTCTAAAGCCACACAAGTCGGTGGCAACCCTTCTAAAGCCCACACAA
GTCGGTGGCAACCTTTCTAAAAGCCTACA
Found at i:906379 original size:64 final size:64
Alignment explanation
Indices: 906210--906972 Score: 402
Period size: 64 Copynumber: 11.7 Consensus size: 64
906200 AAGTCCACGT
* * * *
906210 AAGTTGGTGGCAACCCTTTTCTATAGCCTACACAAGTCGGTGGCAACCC-T-TCTAGAGCTGACA
1 AAGTTGGTGGCAACCC--TTCTAAAGCCCACACAAGTCGGTGGCAACCCTTCTCTAAAGCTCACA
906273 C
64 C
* * * * * ** *
906274 AAGTCGGTGGCAACCTTTCAAAAGCCTACATAAGTTAGTGGCAACCCTTCTCTAAAGCTCACAT
1 AAGTTGGTGGCAACCCTTCTAAAGCCCACACAAGTCGGTGGCAACCCTTCTCTAAAGCTCACAC
* * * *
906338 AAGTTGGAGGCAACCCTTCTAAAGCCCACCCAAGTCGGTGGCAACCTTTCTTTAAAGCGT-ACAC
1 AAGTTGGTGGCAACCCTTCTAAAGCCCACACAAGTCGGTGGCAACCCTTCTCTAAAGC-TCACAC
* *
906402 AAGTCGGTGGCAACCCTTCTAAAGCCCACACAAGTCGGTGGCAACCCTTCTCTAAAGCCCACAC
1 AAGTTGGTGGCAACCCTTCTAAAGCCCACACAAGTCGGTGGCAACCCTTCTCTAAAGCTCACAC
* ** * * * * * *
906466 AAGTTAGTGATAACCCTTCCTTAAACCCCACAAAAGTCAGTGACAACCTTTCTCTAAAGCCCACA
1 AAGTTGGTGGCAACCCTT-C-TAAAGCCCACACAAGTCGGTGGCAACCCTTCTCTAAAGCTCACA
906531 C
64 C
* * * * * * * * * *
906532 ATGTCGATCGTAATACTTCTCTAAAGTCCCA-ACAAGTCAGTGGCAACCC--ATCTAAAGCCCAC
1 AAGTTGGTGGCAA-CCCT-TCTAAAG-CCCACACAAGTCGGTGGCAACCCTTCTCTAAAGCTCAC
*
906594 CC
63 AC
* * * * * * * *
906596 AAATTGTTAGCAACCCTTCTGAAGCCCACACAAGTCGGTCACACAAGTCAGTGGCAACCAT-TCC
1 AAGTTGGTGGCAACCCTTCTAAAGCCCACACAAGTCGGT-------GGCA-----ACCCTTCTCT
* *
906660 ACAGCCCACAC
54 AAAGCTCACAC
* * * * *
906671 AAGTTGGTAGCAACCCTTCTCTAAAGCCC-CATAAGTCGGTGGCAACTCCCT-TCAAAAGCCCAC
1 AAGTTGGTGGCAACCC-T-TCTAAAGCCCACACAAGTCGGTGGCAAC-CCTTCTCTAAAGCTCAC
906734 AC
63 AC
* * * ** * * *
906736 AAGTCGGTGGCAACTCCCTTCAAAAGCCCACATAAGTTAG-GGCAACTCTT-TCAAAAGCACACA
1 AAGTTGGTGGCAA--CCCTTCTAAAGCCCACACAAGTCGGTGGCAACCCTTCTCTAAAGCTCACA
*
906799 T
64 C
* ** * * * * * * *
906800 AAGTCGGTGGCAACATTATTTAAAAGCCTACACAAGTCGATGGTAACTC-TCTCAAAAGCCCACA
1 AAGTTGGTGGCAACCCT-TCT-AAAGCCCACACAAGTCGGTGGCAACCCTTCTCTAAAGCTCACA
906864 C
64 C
** * ** * * *
906865 AAGTCAGTGGCAACCCTTCTAAAGCCCACACTAGTTAGTGGCAACACCCT-TCAAAAGCCCACAC
1 AAGTTGGTGGCAACCCTTCTAAAGCCCACACAAGTCGGTGGCAAC-CCTTCTCTAAAGCTCACAC
* * * *
906929 AAGTCGGTGGCAACTC-TCTGAAAAGCCCACATAATTCGGTGGCA
1 AAGTTGGTGGCAACCCTTCT--AAAGCCCACACAAGTCGGTGGCA
906973 TTTTCTTCTA
Statistics
Matches: 547, Mismatches: 114, Indels: 75
0.74 0.15 0.10
Matches are distributed among these distances:
61 4 0.01
62 43 0.08
63 26 0.05
64 239 0.44
65 95 0.17
66 75 0.14
67 10 0.02
68 1 0.00
69 6 0.01
74 3 0.01
75 25 0.05
76 11 0.02
77 9 0.02
ACGTcount: A:0.31, C:0.31, G:0.17, T:0.21
Consensus pattern (64 bp):
AAGTTGGTGGCAACCCTTCTAAAGCCCACACAAGTCGGTGGCAACCCTTCTCTAAAGCTCACAC
Found at i:906481 original size:33 final size:33
Alignment explanation
Indices: 906210--906972 Score: 442
Period size: 33 Copynumber: 23.4 Consensus size: 33
906200 AAGTCCACGT
* * * *
906210 AAGTTGGTGGCAACCCTTTTCTATAGCCTACAC
1 AAGTCGGTGGCAACCCTTCTCTAAAGCCCACAC
* **
906243 AAGTCGGTGGCAACCC-T-TCTAGAGCTGACAC
1 AAGTCGGTGGCAACCCTTCTCTAAAGCCCACAC
* * *
906274 AAGTCGGTGGCAA-CCTT-TCAAAAGCCTACAT
1 AAGTCGGTGGCAACCCTTCTCTAAAGCCCACAC
** * *
906305 AAGTTAGTGGCAACCCTTCTCTAAAGCTCACAT
1 AAGTCGGTGGCAACCCTTCTCTAAAGCCCACAC
* * *
906338 AAGTTGGAGGCAACCC-T-TCTAAAGCCCACCC
1 AAGTCGGTGGCAACCCTTCTCTAAAGCCCACAC
* * **
906369 AAGTCGGTGGCAACCTTTCTTTAAAGCGTACAC
1 AAGTCGGTGGCAACCCTTCTCTAAAGCCCACAC
906402 AAGTCGGTGGCAACCC-T-TCTAAAGCCCACAC
1 AAGTCGGTGGCAACCCTTCTCTAAAGCCCACAC
906433 AAGTCGGTGGCAACCCTTCTCTAAAGCCCACAC
1 AAGTCGGTGGCAACCCTTCTCTAAAGCCCACAC
** ** * *
906466 AAGTTAGTGATAACCCTTC-CTTAAACCCCACAA
1 AAGTCGGTGGCAACCCTTCTC-TAAAGCCCACAC
* * *
906499 AAGTCAGTGACAACCTTTCTCTAAAGCCCACAC
1 AAGTCGGTGGCAACCCTTCTCTAAAGCCCACAC
* * * * **
906532 ATGTCGATCGTAATACTTCTCTAAAGTCCCA-AC
1 AAGTCGGTGGCAACCCTTCTCTAAAG-CCCACAC
* * *
906565 AAGTCAGTGGCAACCC--ATCTAAAGCCCACCC
1 AAGTCGGTGGCAACCCTTCTCTAAAGCCCACAC
* * * * *
906596 AAATTGTTAGCAACCC-T-TCTGAAGCCCACAC
1 AAGTCGGTGGCAACCCTTCTCTAAAGCCCACAC
** *** * *
906627 AAGTCGGTCACACAAGTCAGTGGCAACCATTCCACAGCCCACAC
1 AAGTCGGT--GGCAA--C-----C--CTTCTCTAAAGCCCACAC
* * *
906671 AAGTTGGTAGCAACCCTTCTCTAAAGCCC-CAT
1 AAGTCGGTGGCAACCCTTCTCTAAAGCCCACAC
* *
906703 AAGTCGGTGGCAACTCCCT-TCAAAAGCCCACAC
1 AAGTCGGTGGCAAC-CCTTCTCTAAAGCCCACAC
* * *
906736 AAGTCGGTGGCAACTCCCT-TCAAAAGCCCACAT
1 AAGTCGGTGGCAAC-CCTTCTCTAAAGCCCACAC
** * * * *
906769 AAGTTAG-GGCAACTCTT-TCAAAAGCACACAT
1 AAGTCGGTGGCAACCCTTCTCTAAAGCCCACAC
* * * *
906800 AAGTCGGTGGCAA-CATTATTTAAAAGCCTACAC
1 AAGTCGGTGGCAACCCTTCTCT-AAAGCCCACAC
* * * *
906833 AAGTCGATGGTAACTC-TCTCAAAAGCCCACAC
1 AAGTCGGTGGCAACCCTTCTCTAAAGCCCACAC
*
906865 AAGTCAGTGGCAACCC-T-TCTAAAGCCCACAC
1 AAGTCGGTGGCAACCCTTCTCTAAAGCCCACAC
* ** * *
906896 TAGTTAGTGGCAACACCCT-TCAAAAGCCCACAC
1 AAGTCGGTGGCAAC-CCTTCTCTAAAGCCCACAC
* ** *
906929 AAGTCGGTGGCAACTC-TCTGAAAAGCCCACAT
1 AAGTCGGTGGCAACCCTTCTCTAAAGCCCACAC
*
906961 AATTCGGTGGCA
1 AAGTCGGTGGCA
906973 TTTTCTTCTA
Statistics
Matches: 569, Mismatches: 127, Indels: 69
0.74 0.17 0.09
Matches are distributed among these distances:
30 6 0.01
31 180 0.32
32 94 0.17
33 258 0.45
34 5 0.01
35 2 0.00
40 2 0.00
42 4 0.01
44 18 0.03
ACGTcount: A:0.31, C:0.31, G:0.17, T:0.21
Consensus pattern (33 bp):
AAGTCGGTGGCAACCCTTCTCTAAAGCCCACAC
Found at i:906749 original size:65 final size:64
Alignment explanation
Indices: 906662--906972 Score: 301
Period size: 65 Copynumber: 4.8 Consensus size: 64
906652 ACCATTCCAC
* *
906662 AGCCCACACAAGTTGGTAGCAACCCTTCTCTAAAGCCC-CATAAGTCGGTGGCAACTCCCTTCAA
1 AGCCCACACAAGTCGGTGGCAACCC-T-TCTAAAGCCCACATAAGTCGGTGGCAACTCCCTTCAA
906726 A
64 A
* ** *
906727 AGCCCACACAAGTCGGTGGCAACTCCCTTCAAAAGCCCACATAAGTTAG-GGCAACT-CTTTCAA
1 AGCCCACACAAGTCGGTGGCAA--CCCTTCTAAAGCCCACATAAGTCGGTGGCAACTCCCTTCAA
906790 A
64 A
* * ** * * * * * *
906791 AGCACACATAAGTCGGTGGCAACATTATTTAAAAGCCTACACAAGTCGATGGTAACTCTC-TCAA
1 AGCCCACACAAGTCGGTGGCAACCCT-TCT-AAAGCCCACATAAGTCGGTGGCAACTCCCTTCAA
906855 A
64 A
* ** *
906856 AGCCCACACAAGTCAGTGGCAACCCTTCTAAAGCCCACACT-AGTTAGTGGCAACACCCTTCAAA
1 AGCCCACACAAGTCGGTGGCAACCCTTCTAAAGCCCACA-TAAGTCGGTGGCAACTCCCTTCAAA
* *
906920 AGCCCACACAAGTCGGTGGCAACTC-TCTGAAAAGCCCACATAATTCGGTGGCA
1 AGCCCACACAAGTCGGTGGCAACCCTTCT--AAAGCCCACATAAGTCGGTGGCA
906973 TTTTCTTCTA
Statistics
Matches: 195, Mismatches: 39, Indels: 24
0.76 0.15 0.09
Matches are distributed among these distances:
62 2 0.01
63 24 0.12
64 71 0.36
65 86 0.44
66 9 0.05
67 3 0.02
ACGTcount: A:0.32, C:0.31, G:0.18, T:0.19
Consensus pattern (64 bp):
AGCCCACACAAGTCGGTGGCAACCCTTCTAAAGCCCACATAAGTCGGTGGCAACTCCCTTCAAA
Found at i:906972 original size:96 final size:96
Alignment explanation
Indices: 906635--906959 Score: 363
Period size: 96 Copynumber: 3.4 Consensus size: 96
906625 ACAAGTCGGT
* * * * *
906635 CACACAAGTCAGTGGCAAC-CAT-TCCACAGCCCACACAAGTTGGTAGCAACCCTTCTCTAAAGC
1 CACACAAGTCGGTGGCAACTC-TCTCAAAAGCCCACACAAGTTAGTGGCAACCC-T-TCTAAAGC
*
906698 CC-CATAAGTCGGTGGCAACTCCCTTCAAAAGCC
63 CCACATAAGTCGGTGGCAACACCCTTCAAAAGCC
* * * * *
906731 CACACAAGTCGGTGGCAACTCCCTTCAAAAGCCCACATAAGTTAG-GGCAACTCTTTCAAAAGCA
1 CACACAAGTCGGTGGCAACTCTC-TCAAAAGCCCACACAAGTTAGTGGCAAC-CCTTCTAAAGCC
*** *
906795 CACATAAGTCGGTGGCAACATTATTTAAAAGCC
64 CACATAAGTCGGTGGCAACACCCTTCAAAAGCC
* * * *
906828 TACACAAGTCGATGGTAACTCTCTCAAAAGCCCACACAAGTCAGTGGCAACCCTTCTAAAGCCCA
1 CACACAAGTCGGTGGCAACTCTCTCAAAAGCCCACACAAGTTAGTGGCAACCCTTCTAAAGCCCA
**
906893 CACT-AGTTAGTGGCAACACCCTTCAAAAGCC
66 CA-TAAGTCGGTGGCAACACCCTTCAAAAGCC
*
906924 CACACAAGTCGGTGGCAACTCTCTGAAAAGCCCACA
1 CACACAAGTCGGTGGCAACTCTCTCAAAAGCCCACA
906960 TAATTCGGTG
Statistics
Matches: 188, Mismatches: 34, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
96 111 0.59
97 59 0.31
98 18 0.10
ACGTcount: A:0.33, C:0.32, G:0.17, T:0.18
Consensus pattern (96 bp):
CACACAAGTCGGTGGCAACTCTCTCAAAAGCCCACACAAGTTAGTGGCAACCCTTCTAAAGCCCA
CATAAGTCGGTGGCAACACCCTTCAAAAGCC
Found at i:907175 original size:113 final size:112
Alignment explanation
Indices: 907040--907765 Score: 407
Period size: 113 Copynumber: 6.2 Consensus size: 112
907030 TATTTCATTC
* * * * * *
907040 TAAGCCCAATGTCGCTAGCCTTGAATCAACACATTTGCTCCTTTTTCTTTCTTAAGTCTAATATC
1 TAAGCCCAATGTCGCTAGCCTTGAATTAGCACATTTGCACCTTTGTC-ATCTTAAGCCTAATATC
* * * *
907105 GCTGGCCTTTAATAAGCATATCGACACCTTTATCGTTTTTCTCATCTT
65 GCTGGCCTTAAATAAGCATATTGGCACCTTTATCATTTTTCTCATCTT
* * * *
907153 CAAGCCCAATGTCGCCATCCTTGAATTAGCACA-TTGCCACCTTTGTCATCTTCAAGCCCAATAT
1 TAAGCCCAATGTCGCTAGCCTTGAATTAGCACATTTG-CACCTTTGTCATCTT-AAGCCTAATAT
* * * * *
907217 CGTTGGTCC-TGAATTAGCATATTGGCACCATTATCATTTTTCCCATCTT
64 CGCTGG-CCTTAAATAAGCATATTGGCACCTTTATCATTTTTCTCATCTT
* * * * * * *
907266 TAAGTCTAATGTCGCTGGACTTGAATTAGCGCATTGGCACCTTTGTCATCTTTAAGCCTAATATT
1 TAAGCCCAATGTCGCTAGCCTTGAATTAGCACATTTGCACCTTTGTCATC-TTAAGCCTAATATC
* * *
907331 GCTCGCCTTAAATCAGCATATTGGCACCTTTATCATTCTTCTCATCTT
65 GCTGGCCTTAAATAAGCATATTGGCACCTTTATCATTTTTCTCATCTT
* * * **** * *
907379 TAAGTCCAATGTTC-TTAGCCTTGAATCAATGTATTGGCACCTTTGTCATCTTTAAGCCCAATAT
1 TAAGCCCAATG-TCGCTAGCCTTGAATTAGCACATTTGCACCTTTGTCATC-TTAAGCCTAATAT
* * * * * ** * *
907443 CACTAGCCTTGAATAAGCATATTAGCATCGCTAGCCTTGAATAAGCATATCGACATCTT
64 CGCTGGCCTTAAATAAGCATATT-G----GC-A-CCTT-TATCA-TTTTTC-TCATCTT
* * * *
907502 TATCATTCTTCTC-ATCTTCAAGCCTAATATCGTCGGCCTTGAATCAGCACATTGGCACCTTTGT
1 TA--A-GC--C-CAAT-GTC--G-C---TA------GCCTTGAATTAGCACATTTGCACCTTTGT
* * * *
907566 CATCTTTAAGCCTAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTTATCATTCTTCTCATC
47 CATC-TTAAGCCTAATATCGCTGGCCTTAAATAAGCATATTGGCACCTTTATCATTTTTCTCATC
907631 TT
111 TT
* * *** * * * * * *
907633 CAAGTCCAATGTTATTGGCCTCGAATTAGCGCATTGGCACCTTTGTCATTTTGAAGCCCAATATC
1 TAAGCCCAATGTCGCTAGCCTTGAATTAGCACATTTGCACCTTTGTCATCTT-AAGCCTAATATC
* * * * * *
907698 GCTGGCTTTCAATCAGCATATTAGCATCTTTATCATTCTTCTCATCTT
65 GCTGGCCTTAAATAAGCATATTGGCACCTTTATCATTTTTCTCATCTT
* * *
907746 CAAGCCCAATATCGTTAGCC
1 TAAGCCCAATGTCGCTAGCC
907766 ATGGATCAAC
Statistics
Matches: 474, Mismatches: 100, Indels: 78
0.73 0.15 0.12
Matches are distributed among these distances:
112 11 0.02
113 337 0.71
114 9 0.02
118 2 0.00
119 2 0.00
120 4 0.01
121 3 0.01
122 2 0.00
123 8 0.02
125 3 0.01
126 3 0.01
128 5 0.01
129 2 0.00
131 7 0.01
132 2 0.00
133 3 0.01
134 4 0.01
135 3 0.01
136 2 0.00
140 1 0.00
141 61 0.13
ACGTcount: A:0.24, C:0.26, G:0.14, T:0.36
Consensus pattern (112 bp):
TAAGCCCAATGTCGCTAGCCTTGAATTAGCACATTTGCACCTTTGTCATCTTAAGCCTAATATCG
CTGGCCTTAAATAAGCATATTGGCACCTTTATCATTTTTCTCATCTT
Found at i:907592 original size:52 final size:52
Alignment explanation
Indices: 907513--907625 Score: 165
Period size: 52 Copynumber: 2.2 Consensus size: 52
907503 ATCATTCTTC
*
907513 TCATCTTCAAGCCTAATATCGTCGGCCTTGAATCAGCACATTGGCACCTTTG
1 TCATCTTCAAGCCTAATATCGTCGGCCTTGAATCAGCACATTGGCACCTTTA
* * *
907565 TCATCTTTAAGCCTAATATTG-CTGGCCTTGAATCAGCATATTGGCACCTTTA
1 TCATCTTCAAGCCTAATATCGTC-GGCCTTGAATCAGCACATTGGCACCTTTA
907617 TCATTCTTC
1 TCA-TCTTC
907626 TCATCTTCAA
Statistics
Matches: 54, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
51 1 0.02
52 49 0.91
53 4 0.07
ACGTcount: A:0.23, C:0.27, G:0.15, T:0.35
Consensus pattern (52 bp):
TCATCTTCAAGCCTAATATCGTCGGCCTTGAATCAGCACATTGGCACCTTTA
Found at i:907593 original size:141 final size:141
Alignment explanation
Indices: 907335--907606 Score: 350
Period size: 141 Copynumber: 1.9 Consensus size: 141
907325 AATATTGCTC
* * * * * *
907335 GCCTTAAATCAGCATATTGGCACCTTTATCATTCTTCTCATCTTTAAGTCCAATGTTCTTAGCCT
1 GCCTTAAATAAGCATATCGACACCTTTATCATTCTTCTCATCTTCAAGTCCAATGATCTCAGCCT
***
907400 TGAATCAATGTATTGGCACCTTTGTCATCTTTAAGCCCAATATCACTAGCCTTGAATAAGCATAT
66 TGAATCAACACATTGGCACCTTTGTCATCTTTAAGCCCAATATCACTAGCCTTGAATAAGCATAT
907465 TAGCATCGCTA
131 TAGCATCGCTA
* * *
907476 GCCTTGAATAAGCATATCGACATCTTTATCATTCTTCTCATCTTCAAG-CCTAAT-ATCGTCGGC
1 GCCTTAAATAAGCATATCGACACCTTTATCATTCTTCTCATCTTCAAGTCC-AATGATC-TCAGC
* * ** * *
907539 CTTGAATCAGCACATTGGCACCTTTGTCATCTTTAAGCCTAATATTGCTGGCCTTGAATCAGCAT
64 CTTGAATCAACACATTGGCACCTTTGTCATCTTTAAGCCCAATATCACTAGCCTTGAATAAGCAT
907604 ATT
129 ATT
907607 GGCACCTTTA
Statistics
Matches: 111, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
140 4 0.04
141 107 0.96
ACGTcount: A:0.26, C:0.25, G:0.14, T:0.36
Consensus pattern (141 bp):
GCCTTAAATAAGCATATCGACACCTTTATCATTCTTCTCATCTTCAAGTCCAATGATCTCAGCCT
TGAATCAACACATTGGCACCTTTGTCATCTTTAAGCCCAATATCACTAGCCTTGAATAAGCATAT
TAGCATCGCTA
Found at i:907681 original size:254 final size:254
Alignment explanation
Indices: 907247--907725 Score: 719
Period size: 254 Copynumber: 1.9 Consensus size: 254
907237 ATTGGCACCA
* * * * * *
907247 TTATCATTTTTCCCATCTTTAAGTCTAATGTCGCTGGACTTGAATTAGCGCATTGGCACCTTTGT
1 TTATCATTCTTCCCATCTTCAAGCCTAATATCGCTGGACTTGAATCAGCACATTGGCACCTTTGT
907312 CATCTTTAAGCCTAATATTGCTCGCCTTAAATCAGCATATTGGCACCTTTATCATTCTTCTCATC
66 CATCTTTAAGCCTAATATTGCTCGCCTTAAATCAGCATATTGGCACCTTTATCATTCTTCTCATC
* * * * *
907377 TTTAAGTCCAATGTTCTTAGCCTTGAATCAATGTATTGGCACCTTTGTCATCTTT-AAGCCCAAT
131 TTCAAGTCCAATGTTATTAGCCTCGAATCAACGCATTGGCACCTTTGTCAT-TTTGAAGCCCAAT
*
907441 ATCACTAGCCTTGAATAAGCATATTAGCATCGCTAGCCTTGAATAAGCATATCGACATCT
195 ATCACTAGCCTTCAATAAGCATATTAGCATCGCTAGCCTTGAATAAGCATATCGACATCT
* *
907501 TTATCATTCTTCTCATCTTCAAGCCTAATATCG-TCGGCCTTGAATCAGCACATTGGCACCTTTG
1 TTATCATTCTTCCCATCTTCAAGCCTAATATCGCT-GGACTTGAATCAGCACATTGGCACCTTTG
* *
907565 TCATCTTTAAGCCTAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTTATCATTCTTCTCAT
65 TCATCTTTAAGCCTAATATTGCTCGCCTTAAATCAGCATATTGGCACCTTTATCATTCTTCTCAT
* * *
907630 CTTCAAGTCCAATGTTATTGGCCTCGAATTAGCGCATTGGCACCTTTGTCATTTTGAAGCCCAAT
130 CTTCAAGTCCAATGTTATTAGCCTCGAATCAACGCATTGGCACCTTTGTCATTTTGAAGCCCAAT
* * * *
907695 ATCGCTGGCTTTCAATCAGCATATTAGCATC
195 ATCACTAGCCTTCAATAAGCATATTAGCATC
907726 TTTATCATTC
Statistics
Matches: 200, Mismatches: 23, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
253 4 0.02
254 196 0.98
ACGTcount: A:0.24, C:0.25, G:0.14, T:0.37
Consensus pattern (254 bp):
TTATCATTCTTCCCATCTTCAAGCCTAATATCGCTGGACTTGAATCAGCACATTGGCACCTTTGT
CATCTTTAAGCCTAATATTGCTCGCCTTAAATCAGCATATTGGCACCTTTATCATTCTTCTCATC
TTCAAGTCCAATGTTATTAGCCTCGAATCAACGCATTGGCACCTTTGTCATTTTGAAGCCCAATA
TCACTAGCCTTCAATAAGCATATTAGCATCGCTAGCCTTGAATAAGCATATCGACATCT
Found at i:907788 original size:367 final size:367
Alignment explanation
Indices: 907102--907794 Score: 960
Period size: 367 Copynumber: 1.9 Consensus size: 367
907092 TAAGTCTAAT
* * * * *
907102 ATCGCTGGCCTTTAATAAGCATATCGACACCTTTATCGTTTTTCTCATCTTCAAGCCCAATGTCG
1 ATCGCTAGCCTTGAATAAGCATATCGACACCTTTATCATTCTTCTCATCTTCAAGCCCAATATCG
* * * *
907167 CCATCCTTGAATTAGCACATTGCCACCTTTGTCATCTTCAAGCCCAATATCGTTGGTCCTGAATT
66 CCAGCCTTGAATCAGCACATTGCCACCTTTGTCATCTTCAAGCCCAATATCGCTGGTCCTGAATC
* * * * *
907232 AGCATATTGGCACCATTATCATTTTTCCCATCTTTAAGTCTAATGTCGCTGGACTTGAATTAGCG
131 AGCATATTGGCACCATTATCATTCTTCCCATCTTCAAGTCCAATGTCACTGGACTCGAATTAGCG
* * *
907297 CATTGGCACCTTTGTCATCTTTAAGCCTAATATTGCTCGCCTTAAATCAGCATATTGGCACCTTT
196 CATTGGCACCTTTGTCATCTTTAAGCCCAATATCGCTCGCCTTAAATCAGCATATTAGCACCTTT
* * * * ** *
907362 ATCATTCTTCTCATCTTTAAGTCCAATGTTCTTAGCCTTGAATCAATGTATTGGCACCTTTGTCA
261 ATCATTCTTCTCATCTTCAAGCCCAATGATCTTAGCCATGAATCAACATATTGGCACCTTTATCA
907427 TCTTTAAGCCCAATATCACTAGCCTTGAATAAGCATATTAGC
326 TCTTTAAGCCCAATATCACTAGCCTTGAATAAGCATATTAGC
* *
907469 ATCGCTAGCCTTGAATAAGCATATCGACATCTTTATCATTCTTCTCATCTTCAAGCCTAATATCG
1 ATCGCTAGCCTTGAATAAGCATATCGACACCTTTATCATTCTTCTCATCTTCAAGCCCAATATCG
* * * * * *
907534 TCGGCCTTGAATCAGCACATTGGCACCTTTGTCATCTTTAAGCCTAATATTGCTGG-CCTTGAAT
66 CCAGCCTTGAATCAGCACATTGCCACCTTTGTCATCTTCAAGCCCAATATCGCTGGTCC-TGAAT
* * * * *
907598 CAGCATATTGGCACCTTTATCATTCTTCTCATCTTCAAGTCCAATGTTATTGGCCTCGAATTAGC
130 CAGCATATTGGCACCATTATCATTCTTCCCATCTTCAAGTCCAATGTCACTGGACTCGAATTAGC
* * * *
907663 GCATTGGCACCTTTGTCAT-TTTGAAGCCCAATATCGCTGGCTTTCAATCAGCATATTAGCATCT
195 GCATTGGCACCTTTGTCATCTTT-AAGCCCAATATCGCTCGCCTTAAATCAGCATATTAGCACCT
*
907727 TTATCATTCTTCTCATCTTCAAGCCCAAT-ATCGTTAGCCATGGATCAACATATTGGCACCTTTA
259 TTATCATTCTTCTCATCTTCAAGCCCAATGATC-TTAGCCATGAATCAACATATTGGCACCTTTA
907791 TCAT
323 TCAT
907795 TCTTCACATC
Statistics
Matches: 281, Mismatches: 42, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
366 7 0.02
367 274 0.98
ACGTcount: A:0.25, C:0.26, G:0.14, T:0.36
Consensus pattern (367 bp):
ATCGCTAGCCTTGAATAAGCATATCGACACCTTTATCATTCTTCTCATCTTCAAGCCCAATATCG
CCAGCCTTGAATCAGCACATTGCCACCTTTGTCATCTTCAAGCCCAATATCGCTGGTCCTGAATC
AGCATATTGGCACCATTATCATTCTTCCCATCTTCAAGTCCAATGTCACTGGACTCGAATTAGCG
CATTGGCACCTTTGTCATCTTTAAGCCCAATATCGCTCGCCTTAAATCAGCATATTAGCACCTTT
ATCATTCTTCTCATCTTCAAGCCCAATGATCTTAGCCATGAATCAACATATTGGCACCTTTATCA
TCTTTAAGCCCAATATCACTAGCCTTGAATAAGCATATTAGC
Found at i:907829 original size:61 final size:61
Alignment explanation
Indices: 907708--907843 Score: 157
Period size: 61 Copynumber: 2.2 Consensus size: 61
907698 GCTGGCTTTC
* * * * *
907708 AATCAGCATATTAGCATCTTTATCATTCTTCTCATCTTCAAGCCCAATATCGTTAGCCATG
1 AATCAACATATTGGCACCTTTATCATTCTTCACATCTTCAAGCCCAATATCATTAGCCATG
* * * * *
907769 GATCAACATATTGGCACCTTTATCATTCTTCACATCTTTAAGTCTAATGTCATT-GACCATG
1 AATCAACATATTGGCACCTTTATCATTCTTCACATCTTCAAGCCCAATATCATTAG-CCATG
*
907830 AATCAACACATTGG
1 AATCAACATATTGG
907844 TACTCTTCTT
Statistics
Matches: 62, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
60 1 0.02
61 61 0.98
ACGTcount: A:0.29, C:0.24, G:0.11, T:0.35
Consensus pattern (61 bp):
AATCAACATATTGGCACCTTTATCATTCTTCACATCTTCAAGCCCAATATCATTAGCCATG
Found at i:908441 original size:64 final size:64
Alignment explanation
Indices: 908289--909063 Score: 444
Period size: 64 Copynumber: 11.8 Consensus size: 64
908279 TAAATGAACA
** * *
908289 AAAGCCCACGTAAGTCGGTGGCAACCCTTTTCTATAGCCTACACAAGTCGGTGGCAACCC-T-TC
1 AAAGCCCACACAAGTCGGTGGCAACCC--TTCTAAAGCCTACACAAGTCAGTGGCAACCCTTCTC
908352 T
64 T
* * * * * *
908353 AGAGCCGACACAAGTCGGTGGCAACCTTTCAAAAGCCTACATAAGTTAGTGGCAACCCTTCTCT
1 AAAGCCCACACAAGTCGGTGGCAACCCTTCTAAAGCCTACACAAGTCAGTGGCAACCCTTCTCT
* * * * ** *
908417 AAAGCCCACATAAGTTGGAGGCAACCCTTCTAAAGTCC-ACCCAAGTTGGTGGCAACCCTTCTTT
1 AAAGCCCACACAAGTCGGTGGCAACCCTTCTAAAG-CCTACACAAGTCAGTGGCAACCCTTCTCT
* * * *
908481 AAGGCCTACACAAGTCGGTGGCAACCCTTCTAAAGCCCACACAAGTCAGTGGAAACCCTTCTCT
1 AAAGCCCACACAAGTCGGTGGCAACCCTTCTAAAGCCTACACAAGTCAGTGGCAACCCTTCTCT
* * ** ** * * * * * *
908545 AAAACCCACACAGGTTAGTGATAACCCTTCCTTAAACCCCACAAAAGTCGGTGACAACCTTTCTC
1 AAAGCCCACACAAGTCGGTGGCAACCCTT-C-TAAAGCCTACACAAGTCAGTGGCAACCCTTCTC
908610 T
64 T
* * * *** * * * *
908611 GAAGCCCACACATGTCGATCATAATACTTCTCTAAAGTCCTA-ACAAGTCGGTGGCAACCC--AT
1 AAAGCCCACACAAGTCGGTGGCAA-CCCT-TCTAAAG-CCTACACAAGTCAGTGGCAACCCTTCT
908673 CT
63 CT
* * * * * * *
908675 AAAGCCCACCCAAATTGGTAGCAACCCTTCTGAAGCCCACACAAGTCGGTCACACAAGTCAGTGG
1 AAAGCCCACACAAGTCGGTGGCAACCCTTCTAAAGCCTACACAA----GT----C-AGT--G-GC
* * *
908740 CAACCAT-TCT
54 AACCCTTCTCT
* * * * * * *
908750 ACAGCCCACACAAGTTGGTAGCAACCCTTCTCTAAAGCC-CCATAAGTCGGTGGCAACTCCCT-T
1 AAAGCCCACACAAGTCGGTGGCAACCC-T-TCTAAAGCCTACACAAGTCAGTGGCAAC-CCTTCT
*
908813 CA
63 CT
* * * * *
908815 AAAGCCCACACAAGTCGGTGGGAACTCCCTTCAAAAGCCCACATAAGTCAGTGGCAACTCTT-TC
1 AAAGCCCACACAAGTCGGTGGCAA--CCCTTCTAAAGCCTACACAAGTCAGTGGCAACCCTTCTC
*
908879 A
64 T
* * * * * *
908880 AAAGCACACATAAGTCGGTCGCAA-CCTTCTTTAAAAGCCTACACAAGTCGGTGGTAACTC-TCT
1 AAAGCCCACACAAGTCGGTGGCAACCCTTC--T-AAAGCCTACACAAGTCAGTGGCAACCCTTCT
*
908943 CA
63 CT
* * * *
908945 AAAGCCCACACAAGTCAGTGGCAACCCTTCTAAAGCCCACACAAGTCAGTGGCAACCC-CCTTCA
1 AAAGCCCACACAAGTCGGTGGCAACCCTTCTAAAGCCTACACAAGTCAGTGGCAACCCTTC-TCT
* * *
909009 AAAGCCCACACAAGTCGGTGGCAACTC-TCTGAAAAGCCCACACAATTCAGTGGCA
1 AAAGCCCACACAAGTCGGTGGCAACCCTTCT--AAAGCCTACACAAGTCAGTGGCA
909064 TTTTCTTCTA
Statistics
Matches: 554, Mismatches: 119, Indels: 75
0.74 0.16 0.10
Matches are distributed among these distances:
61 3 0.01
62 41 0.07
63 32 0.06
64 197 0.36
65 130 0.23
66 88 0.16
67 11 0.02
68 2 0.00
70 1 0.00
71 2 0.00
72 2 0.00
73 1 0.00
74 4 0.01
75 27 0.05
76 5 0.01
77 8 0.01
ACGTcount: A:0.31, C:0.32, G:0.18, T:0.20
Consensus pattern (64 bp):
AAAGCCCACACAAGTCGGTGGCAACCCTTCTAAAGCCTACACAAGTCAGTGGCAACCCTTCTCT
Done.