Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold398
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1204187
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 6 of 7
Found at i:908462 original size:95 final size:96
Alignment explanation
Indices: 908287--909033 Score: 385
Period size: 97 Copynumber: 7.6 Consensus size: 96
908277 TGTAAATGAA
* * * * *
908287 CAAAAGCCCACGTAAGTCGGTGGCAACCCTTTTCTATAGCCTACACAAGTCGGTGGCAACCCTTC
1 CAAAAGCCTACATAAGTCGGTGGCAACCC-TTTCTAAAGCCCACACAAGTCGGAGGCAACCCTTC
*
908352 TAGAGCCGACACAAGTCGGTGGCAA-CCTT-T
65 TAAAGCCGACACAAGTCGGTGGCAACCCTTCT
** * *
908382 CAAAAGCCTACATAAGTTAGTGGCAACCCTTCTCTAAAGCCCACATAAGTTGGAGGCAACCCTTC
1 CAAAAGCCTACATAAGTCGGTGGCAACCCTT-TCTAAAGCCCACACAAGTCGGAGGCAACCCTTC
* *
908447 TAAAGTCC-ACCCAAGTTGGTGGCAACCCTTCT
65 TAAAG-CCGACACAAGTCGGTGGCAACCCTTCT
** * * * * *
908479 TTAAGGCCTACACAAGTCGGTGGCAACCC-TTCTAAAGCCCACACAAGTCAGTGGAAACCCTTCT
1 CAAAAGCCTACATAAGTCGGTGGCAACCCTTTCTAAAGCCCACACAAGTCGGAGGCAACCC-T-T
* * * ** **
908543 CTAAAACCCACACAGGTTAGTGATAACCCTTC-
64 CTAAAGCCGACACAAGTCGGTGGCAACCCTTCT
* * * * * * * * * *
908575 CTTAAACCCCACAAAAGTCGGTGACAACCTTTCTCTGAAGCCCACACATGTC-GA-TCATAATAC
1 C-AAAAGCCTACATAAGTCGGTGGCAACCCTT-TCTAAAGCCCACACAAGTCGGAGGC--AA-CC
* * *
908638 TTCTCTAAAGTCCTA-ACAAGTCGGTGGCAACCCATCT
61 CT-TCTAAAG-CCGACACAAGTCGGTGGCAACCCTTCT
* ** * * * *
908675 --AAAGCCCACCCAAATTGGTAGCAACCC-TTCTGAAGCCCACACAAGTCGGTCACACAAGTCAG
1 CAAAAGCCTACATAAGTCGGTGGCAACCCTTTCTAAAGCCCACACAAGTC-G--------G--A-
* * * * *
908737 TGGCAACCATTCTACAGCCCACACAAGTTGGTAGCAACCCTTCT
54 -GGCAACCCTTCTAAAGCCGACACAAGTCGGTGGCAACCCTTCT
* * * * * *
908781 CTAAAGCC-CCATAAGTCGGTGGCAACTCCCTTCAAAAGCCCACACAAGTCGGTGGGAACTCCCT
1 CAAAAGCCTACATAAGTCGGTGGCAAC-CCTTTCTAAAGCCCACACAAGTCGGAGGCAA--CCCT
* * * * *
908845 TCAAAAGCCCACATAAGTCAGTGGCAACTCTT-T
63 TCTAAAGCCGACACAAGTCGGTGGCAACCCTTCT
* * * * * *
908878 CAAAAGCAC-ACATAAGTCGGTCGCAACCTTCTTT-AAAAGCCTACACAAGTCGGTGGTAACTCT
1 CAAAAGC-CTACATAAGTCGGTGGCAACC--CTTTCTAAAGCCCACACAAGTCGGAGGCAACCCT
* * *
908941 CTCAAAAGCCCACACAAGTCAGTGGCAACCCTTCT
63 -TCTAAAGCCGACACAAGTCGGTGGCAACCCTTCT
* * * * * *
908976 --AAAGCCCACACAAGTCAGTGGCAACCCCCTTCAAAAGCCCACACAAGTCGGTGGCAAC
1 CAAAAGCCTACATAAGTCGGTGGCAA-CCCTTTCTAAAGCCCACACAAGTCGGAGGCAAC
909034 TCTCTGAAAA
Statistics
Matches: 506, Mismatches: 101, Indels: 89
0.73 0.15 0.13
Matches are distributed among these distances:
94 2 0.00
95 119 0.24
96 61 0.12
97 129 0.25
98 71 0.14
99 45 0.09
100 5 0.01
105 4 0.01
106 25 0.05
107 15 0.03
108 11 0.02
109 18 0.04
110 1 0.00
ACGTcount: A:0.31, C:0.32, G:0.18, T:0.20
Consensus pattern (96 bp):
CAAAAGCCTACATAAGTCGGTGGCAACCCTTTCTAAAGCCCACACAAGTCGGAGGCAACCCTTCT
AAAGCCGACACAAGTCGGTGGCAACCCTTCT
Found at i:908546 original size:33 final size:33
Alignment explanation
Indices: 908289--909063 Score: 482
Period size: 33 Copynumber: 23.7 Consensus size: 33
908279 TAAATGAACA
** *
908289 AAAGCCCACGTAAGTCGGTGGCAACCCTTTTCT
1 AAAGCCCACACAAGTCGGTGGCAACCCTTCTCT
* *
908322 ATAGCCTACACAAGTCGGTGGCAACCC-T-TCT
1 AAAGCCCACACAAGTCGGTGGCAACCCTTCTCT
* * *
908353 AGAGCCGACACAAGTCGGTGGCAA-CCTT-TCA
1 AAAGCCCACACAAGTCGGTGGCAACCCTTCTCT
* * **
908384 AAAGCCTACATAAGTTAGTGGCAACCCTTCTCT
1 AAAGCCCACACAAGTCGGTGGCAACCCTTCTCT
* * *
908417 AAAGCCCACATAAGTTGGAGGCAACCC-T-TCT
1 AAAGCCCACACAAGTCGGTGGCAACCCTTCTCT
* * * *
908448 AAAGTCCACCCAAGTTGGTGGCAACCCTTCTTT
1 AAAGCCCACACAAGTCGGTGGCAACCCTTCTCT
* *
908481 AAGGCCTACACAAGTCGGTGGCAACCC-T-TCT
1 AAAGCCCACACAAGTCGGTGGCAACCCTTCTCT
* *
908512 AAAGCCCACACAAGTCAGTGGAAACCCTTCTCT
1 AAAGCCCACACAAGTCGGTGGCAACCCTTCTCT
* * ** **
908545 AAAACCCACACAGGTTAGTGATAACCCTTC-CTT
1 AAAGCCCACACAAGTCGGTGGCAACCCTTCTC-T
* * * *
908578 AAACCCCACAAAAGTCGGTGACAACCTTTCTCT
1 AAAGCCCACACAAGTCGGTGGCAACCCTTCTCT
* * * *** **
908611 GAAGCCCACACATGTCGATCATAATACTTCTCT
1 AAAGCCCACACAAGTCGGTGGCAACCCTTCTCT
* *
908644 AAAGTCCTA-ACAAGTCGGTGGCAACCC--ATCT
1 AAAG-CCCACACAAGTCGGTGGCAACCCTTCTCT
* * * *
908675 AAAGCCCACCCAAATTGGTAGCAACCC-T-TCT
1 AAAGCCCACACAAGTCGGTGGCAACCCTTCTCT
* ** ***
908706 GAAGCCCACACAAGTCGGTCACACAAGTCAGTGGCAACCATTCT
1 AAAGCCCACACAAGTCGGT--GGCAA--C-----C--CTTCTCT
* * *
908750 ACAGCCCACACAAGTTGGTAGCAACCCTTCTCT
1 AAAGCCCACACAAGTCGGTGGCAACCCTTCTCT
* * *
908783 AAAGCCC-CATAAGTCGGTGGCAACTCCCT-TCA
1 AAAGCCCACACAAGTCGGTGGCAAC-CCTTCTCT
* * *
908815 AAAGCCCACACAAGTCGGTGGGAACTCCCT-TCA
1 AAAGCCCACACAAGTCGGTGGCAAC-CCTTCTCT
* * * *
908848 AAAGCCCACATAAGTCAGTGGCAACTCTT-TCA
1 AAAGCCCACACAAGTCGGTGGCAACCCTTCTCT
* * * *
908880 AAAGCACACATAAGTCGGTCGCAA-CCTTCTTT
1 AAAGCCCACACAAGTCGGTGGCAACCCTTCTCT
* * * *
908912 AAAAGCCTACACAAGTCGGTGGTAACTC-TCTCA
1 -AAAGCCCACACAAGTCGGTGGCAACCCTTCTCT
*
908945 AAAGCCCACACAAGTCAGTGGCAACCC-T-TCT
1 AAAGCCCACACAAGTCGGTGGCAACCCTTCTCT
* * *
908976 AAAGCCCACACAAGTCAGTGGCAACCC-CCTTCA
1 AAAGCCCACACAAGTCGGTGGCAACCCTTC-TCT
* **
909009 AAAGCCCACACAAGTCGGTGGCAACTC-TCTGA
1 AAAGCCCACACAAGTCGGTGGCAACCCTTCTCT
* *
909041 AAAGCCCACACAATTCAGTGGCA
1 AAAGCCCACACAAGTCGGTGGCA
909064 TTTTCTTCTA
Statistics
Matches: 587, Mismatches: 123, Indels: 65
0.76 0.16 0.08
Matches are distributed among these distances:
30 5 0.01
31 169 0.29
32 107 0.18
33 274 0.47
34 5 0.01
35 2 0.00
40 2 0.00
42 4 0.01
44 19 0.03
ACGTcount: A:0.31, C:0.32, G:0.18, T:0.20
Consensus pattern (33 bp):
AAAGCCCACACAAGTCGGTGGCAACCCTTCTCT
Found at i:908852 original size:65 final size:65
Alignment explanation
Indices: 908725--909063 Score: 350
Period size: 65 Copynumber: 5.3 Consensus size: 65
908715 ACAAGTCGGT
* * * * * * *
908725 CACACAAGTCAGTGGCAA--CCATTCTACAGCCCACACAAGTTGGTAGCAACCCTTCTCTAAAGC
1 CACACAAGTCAGTGGCAACTCCCTTCAAAAGCCCACACAAGTCGGTGGCAACCCCT-TCAAAAGC
908788 C
65 C
* * *
908789 C-CATAAGTCGGTGGCAACTCCCTTCAAAAGCCCACACAAGTCGGTGGGAACTCCCTTCAAAAGC
1 CACACAAGTCAGTGGCAACTCCCTTCAAAAGCCCACACAAGTCGGTGGCAAC-CCCTTCAAAAGC
908853 C
65 C
* * * * * * *
908854 CACATAAGTCAGTGGCAACT-CTTTCAAAAGCACACATAAGTCGGTCGCAACCTTCTTTAAAAGC
1 CACACAAGTCAGTGGCAACTCCCTTCAAAAGCCCACACAAGTCGGTGGCAACC-CCTTCAAAAGC
908918 C
65 C
* * * * * *
908919 TACACAAGTCGGTGGTAACTCTC-TCAAAAGCCCACACAAGTCAGTGGCAA-CCCTTCTAAAGCC
1 CACACAAGTCAGTGGCAACTCCCTTCAAAAGCCCACACAAGTCGGTGGCAACCCCTTCAAAAGCC
* * *
908982 CACACAAGTCAGTGGCAACCCCCTTCAAAAGCCCACACAAGTCGGTGGCAA-CTCTCTGAAAAGC
1 CACACAAGTCAGTGGCAACTCCCTTCAAAAGCCCACACAAGTCGGTGGCAACCCCT-TCAAAAGC
909046 C
65 C
*
909047 CACACAATTCAGTGGCA
1 CACACAAGTCAGTGGCA
909064 TTTTCTTCTA
Statistics
Matches: 226, Mismatches: 41, Indels: 15
0.80 0.15 0.05
Matches are distributed among these distances:
63 41 0.18
64 32 0.14
65 133 0.59
66 20 0.09
ACGTcount: A:0.32, C:0.32, G:0.17, T:0.18
Consensus pattern (65 bp):
CACACAAGTCAGTGGCAACTCCCTTCAAAAGCCCACACAAGTCGGTGGCAACCCCTTCAAAAGCC
Found at i:909077 original size:96 final size:95
Alignment explanation
Indices: 908725--909079 Score: 374
Period size: 96 Copynumber: 3.7 Consensus size: 95
908715 ACAAGTCGGT
* * * ** * *
908725 CACACAAGTCAGTGGCAAC-CAT-TCTACAGCCCACACAAGTTGGTAGCAACCCTTCTCTAAAGC
1 CACACAAGTCGGTGGCAACTC-TCTCAAAAGCCCACACAAGTCAGTGGCAACTC-T-TCT-AAGC
*
908788 CC-CATAAGTCGGTGGCAACTCCCTTCAAAAGCC
62 CCACATAAGTCGGTGGCAACCCCCTTCAAAAGCC
* * * * *
908821 CACACAAGTCGGTGGGAACTCCCTTCAAAAGCCCACATAAGTCAGTGGCAACTCTTTCAAAAGCA
1 CACACAAGTCGGTGGCAACTCTC-TCAAAAGCCCACACAAGTCAGTGGCAACTC-TTC-TAAGCC
* ** *
908886 CACATAAGTCGGTCGCAACCTTCTTTAAAAGCC
63 CACATAAGTCGGTGGCAACCCCCTTCAAAAGCC
* * *
908919 TACACAAGTCGGTGGTAACTCTCTCAAAAGCCCACACAAGTCAGTGGCAACCCTTCTAAAGCCCA
1 CACACAAGTCGGTGGCAACTCTCTCAAAAGCCCACACAAGTCAGTGGCAACTCTTCT-AAGCCCA
* *
908984 CACAAGTCAGTGGCAACCCCCTTCAAAAGCC
65 CATAAGTCGGTGGCAACCCCCTTCAAAAGCC
* * **
909015 CACACAAGTCGGTGGCAACTCTCTGAAAAGCCCACACAATTCAGTGGCATTTTCTTCTAAGCCCA
1 CACACAAGTCGGTGGCAACTCTCTCAAAAGCCCACACAAGTCAGTGGCA-ACTCTTCTAAGCCCA
909080 ATGTCGTTGG
Statistics
Matches: 215, Mismatches: 37, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
96 103 0.48
97 41 0.19
98 71 0.33
ACGTcount: A:0.31, C:0.32, G:0.17, T:0.19
Consensus pattern (95 bp):
CACACAAGTCGGTGGCAACTCTCTCAAAAGCCCACACAAGTCAGTGGCAACTCTTCTAAGCCCAC
ATAAGTCGGTGGCAACCCCCTTCAAAAGCC
Found at i:909264 original size:113 final size:113
Alignment explanation
Indices: 909131--909880 Score: 413
Period size: 113 Copynumber: 6.4 Consensus size: 113
909121 TATTTCATTC
* * * * *
909131 TAAGCCCAATGTCGCTAGCCTTGAATCAACACATTTGCTCCTTTTTCTTTC-TTAAGTCTAATAT
1 TAAGCCCAATGTCGCTAGCCTTGAATCAACACATTGGCACCTTTGTCTATCTTTAAGCCTAATAT
* *
909195 CGCTGGCCTTTAATAAGCATATCGACACCTTTATCGTTTTTCTCATCTT
66 CGCTGGCCTTAAATAAGCATAT-GACACCTTTATCATTTTTCTCATCTT
* * * * *
909244 CAAGCCCAATGTCGCCAGCCTTGAATTAGCACATTGGCACCTTTGT-TATCTTTAAGCCCAATAT
1 TAAGCCCAATGTCGCTAGCCTTGAATCAACACATTGGCACCTTTGTCTATCTTTAAGCCTAATAT
* * * *
909308 CGCTGGTCC--AGAATTAGCATATTGGCTCCATTATCATTTTTCTCATCTT
66 CGCTGG-CCTTA-AATAAGCATA-TGACACCTTTATCATTTTTCTCATCTT
* * * * * * * *
909357 TAAGTCTAATGTCGCTGGACTTGAATTAGCGCATTGGCACCTTTGTC-ATCTTTAAGCCTAATGT
1 TAAGCCCAATGTCGCTAGCCTTGAATCAACACATTGGCACCTTTGTCTATCTTTAAGCCTAATAT
* * * * *
909421 TGCTCGCCTTAAATCAGCATATTAGCACCTTTATCATTCTTCTCATCTT
66 CGCTGGCCTTAAATAAGCATATGA-CACCTTTATCATTTTTCTCATCTT
* * * * * *
909470 TAAGTCCAATGTTGTTAGCCTTGAATCAATATATTGGCACCTTTGTC-ATCTTTAAGCCCAATAT
1 TAAGCCCAATGTCGCTAGCCTTGAATCAACACATTGGCACCTTTGTCTATCTTTAAGCCTAATAT
* * * * * * ** * *
909534 CACTAGTCTTGAATAAGCATATCAGCATCGCTAGCCTTGAATAAGCATATCGGCATCTT
66 CGCTGGCCTTAAATAAGCATAT--G-A---C-A-CCTT-TATCA-TTTTTC-TCATCTT
* * * * *
909593 TATCATTCTTTTCATCTTCAA-GCCTAATGTCGTCGGCCTTAAATCAGCACATTGGCACCTTTGT
1 TA--A------GC--C--CAATG--T--CG-C-T-AGCCTTGAATCAACACATTGGCACCTTTGT
* * * * *
909657 C-ATCTTTAAGCCTAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTTATCATTCTTCTCAT
47 CTATCTTTAAGCCTAATATCGCTGGCCTTAAATAAGCATA-TGACACCTTTATCATTTTTCTCAT
909721 CTT
111 CTT
* * *** * * *
909724 CAAGTCCAATGTTATTGGCCTTGAATCAACGCATTGGCACCTTTGTC-AT-TTTGAAGCCCAATA
1 TAAGCCCAATGTCGCTAGCCTTGAATCAACACATTGGCACCTTTGTCTATCTTT-AAGCCTAATA
* * * * * * *
909787 TCGCTAGCCTTAAATCATCATATTAGCATCTTTCTCATTCTTCTCATCTT
65 TCGCTGGCCTTAAATAAGCATATGA-CACCTTTATCATTTTTCTCATCTT
* * * * *
909837 CAAGCCCAATATCGCTAGCCATGGATCAACATATTGGCACCTTT
1 TAAGCCCAATGTCGCTAGCCTTGAATCAACACATTGGCACCTTT
909881 ATCATTCTTC
Statistics
Matches: 488, Mismatches: 108, Indels: 82
0.72 0.16 0.12
Matches are distributed among these distances:
112 10 0.02
113 356 0.73
114 5 0.01
116 2 0.00
118 3 0.01
119 4 0.01
120 5 0.01
121 4 0.01
122 2 0.00
123 8 0.02
125 1 0.00
129 1 0.00
131 7 0.01
132 2 0.00
133 4 0.01
134 5 0.01
135 4 0.01
136 2 0.00
138 2 0.00
140 2 0.00
141 58 0.12
142 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.36
Consensus pattern (113 bp):
TAAGCCCAATGTCGCTAGCCTTGAATCAACACATTGGCACCTTTGTCTATCTTTAAGCCTAATAT
CGCTGGCCTTAAATAAGCATATGACACCTTTATCATTTTTCTCATCTT
Found at i:909449 original size:52 final size:52
Alignment explanation
Indices: 909350--909457 Score: 126
Period size: 52 Copynumber: 2.1 Consensus size: 52
909340 ATCATTTTTC
* * * * * * *
909350 TCATCTTTAAGTCTAATGTCGCTGGACTTGAATTAGCGCATTGGCACCTTTG
1 TCATCTTTAAGCCTAATGTCGCTCGACTTAAATCAGCACATTAGCACCTTTA
* * *
909402 TCATCTTTAAGCCTAATGTTGCTCGCCTTAAATCAGCATATTAGCACCTTTA
1 TCATCTTTAAGCCTAATGTCGCTCGACTTAAATCAGCACATTAGCACCTTTA
909454 TCAT
1 TCAT
909458 TCTTCTCATC
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
52 46 1.00
ACGTcount: A:0.24, C:0.23, G:0.16, T:0.37
Consensus pattern (52 bp):
TCATCTTTAAGCCTAATGTCGCTCGACTTAAATCAGCACATTAGCACCTTTA
Found at i:909481 original size:61 final size:61
Alignment explanation
Indices: 909402--909518 Score: 155
Period size: 61 Copynumber: 1.9 Consensus size: 61
909392 GGCACCTTTG
* *
909402 TCATCTTTAAGCCTAATGTTGCTCGCCTTAAATCAGCATATTAGCACCTTTATCATTCTTC
1 TCATCTTTAAGCCTAATGTTGCTAGCCTTAAATCAACATATTAGCACCTTTATCATTCTTC
* * * * *
909463 TCATCTTTAAGTCC-AATGTTGTTAGCCTTGAATCAATATATTGGCACCTTTGTCAT
1 TCATCTTTAAG-CCTAATGTTGCTAGCCTTAAATCAACATATTAGCACCTTTATCAT
909519 CTTTAAGCCC
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
61 46 0.96
62 2 0.04
ACGTcount: A:0.25, C:0.23, G:0.12, T:0.40
Consensus pattern (61 bp):
TCATCTTTAAGCCTAATGTTGCTAGCCTTAAATCAACATATTAGCACCTTTATCATTCTTC
Found at i:909572 original size:28 final size:28
Alignment explanation
Indices: 909536--909590 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
909526 CCCAATATCA
*
909536 CTAGTCTTGAATAAGCATATCAGCATCG
1 CTAGCCTTGAATAAGCATATCAGCATCG
*
909564 CTAGCCTTGAATAAGCATATCGGCATC
1 CTAGCCTTGAATAAGCATATCAGCATC
909591 TTTATCATTC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (28 bp):
CTAGCCTTGAATAAGCATATCAGCATCG
Found at i:909683 original size:52 final size:51
Alignment explanation
Indices: 909600--909716 Score: 146
Period size: 52 Copynumber: 2.2 Consensus size: 51
909590 CTTTATCATT
*
909600 CTTTTCATCTTCAAGCCTAATGTCGTCGGCCTTAAATCAGCACATTGGCAC
1 CTTTTCATCTTCAAGCCTAATATCGTCGGCCTTAAATCAGCACATTGGCAC
* * * *
909651 CTTTGTCATCTTTAAGCCTAATATTG-CTGGCCTTGAATCAGCATATTGGCAC
1 CTTT-TCATCTTCAAGCCTAATATCGTC-GGCCTTAAATCAGCACATTGGCAC
909703 CTTTATCATTCTTC
1 CTTT-TCA-TCTTC
909717 TCATCTTCAA
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
51 5 0.09
52 47 0.84
53 4 0.07
ACGTcount: A:0.22, C:0.26, G:0.15, T:0.37
Consensus pattern (51 bp):
CTTTTCATCTTCAAGCCTAATATCGTCGGCCTTAAATCAGCACATTGGCAC
Found at i:909686 original size:141 final size:141
Alignment explanation
Indices: 909426--909696 Score: 346
Period size: 141 Copynumber: 1.9 Consensus size: 141
909416 AATGTTGCTC
* * * * *
909426 GCCTTAAATCAGCATATTAGCACCTTTATCATTCTTCTCATCTTTAAGTCCAATGTTGTTAGCCT
1 GCCTTAAATAAGCATATCAGCACCTTTATCATTCTTCTCATCTTCAAGTCCAATGTCGTCAGCCT
* * * *
909491 TGAATCAATATATTGGCACCTTTGTCATCTTTAAGCCCAATATCACTAGTCTTGAATAAGCATAT
66 TAAATCAACACATTGGCACCTTTGTCATCTTTAAGCCCAATATCACTAGCCTTGAATAAGCATAT
909556 CAGCATCGCTA
131 CAGCATCGCTA
* * * * *
909567 GCCTTGAATAAGCATATCGGCATCTTTATCATTCTTTTCATCTTCAAG-CCTAATGTCGTCGGCC
1 GCCTTAAATAAGCATATCAGCACCTTTATCATTCTTCTCATCTTCAAGTCC-AATGTCGTCAGCC
* * ** * *
909631 TTAAATCAGCACATTGGCACCTTTGTCATCTTTAAGCCTAATATTGCTGGCCTTGAATCAGCATA
65 TTAAATCAACACATTGGCACCTTTGTCATCTTTAAGCCCAATATCACTAGCCTTGAATAAGCATA
909696 T
130 T
909697 TGGCACCTTT
Statistics
Matches: 109, Mismatches: 20, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
140 2 0.02
141 107 0.98
ACGTcount: A:0.27, C:0.24, G:0.14, T:0.36
Consensus pattern (141 bp):
GCCTTAAATAAGCATATCAGCACCTTTATCATTCTTCTCATCTTCAAGTCCAATGTCGTCAGCCT
TAAATCAACACATTGGCACCTTTGTCATCTTTAAGCCCAATATCACTAGCCTTGAATAAGCATAT
CAGCATCGCTA
Found at i:909751 original size:61 final size:61
Alignment explanation
Indices: 909678--909934 Score: 190
Period size: 61 Copynumber: 4.4 Consensus size: 61
909668 CTAATATTGC
* *
909678 TGGCCTTGAATCAGCATATTGGCACCTTTATCATTCTTCTCATCTTCAAGTCCAATGTTAT
1 TGGCCTTGAATCAACATATTGGCACCTTTATCATTCTTCTCATCTTCAAGTCCAATGTCAT
** * * * * **
909739 TGGCCTTGAATCAACGCATTGGCACCTTTGTCA------T--T-TTGAAGCCCAATATCGC
1 TGGCCTTGAATCAACATATTGGCACCTTTATCATTCTTCTCATCTTCAAGTCCAATGTCAT
* * * * * * * * **
909791 TAGCCTTAAATCATCATATTAGCATCTTTCTCATTCTTCTCATCTTCAAGCCCAATATCGC
1 TGGCCTTGAATCAACATATTGGCACCTTTATCATTCTTCTCATCTTCAAGTCCAATGTCAT
* * * * * *
909852 TAGCCATGGATCAACATATTGGCACCTTTATCATTCTTCACATCTTTAAGTCTAATGTCAT
1 TGGCCTTGAATCAACATATTGGCACCTTTATCATTCTTCTCATCTTCAAGTCCAATGTCAT
* * *
909913 TGACCATGAATCAACACATTGG
1 TGGCCTTGAATCAACATATTGG
909935 TACTCTTCTT
Statistics
Matches: 150, Mismatches: 37, Indels: 18
0.73 0.18 0.09
Matches are distributed among these distances:
52 36 0.24
53 1 0.01
55 1 0.01
58 1 0.01
60 1 0.01
61 110 0.73
ACGTcount: A:0.26, C:0.26, G:0.13, T:0.35
Consensus pattern (61 bp):
TGGCCTTGAATCAACATATTGGCACCTTTATCATTCTTCTCATCTTCAAGTCCAATGTCAT
Found at i:909772 original size:254 final size:254
Alignment explanation
Indices: 909338--909816 Score: 712
Period size: 254 Copynumber: 1.9 Consensus size: 254
909328 ATTGGCTCCA
* * * * *
909338 TTATCATTTTTCTCATCTTTAAGTCTAATGTCGCTGGACTTGAATTAGCGCATTGGCACCTTTGT
1 TTATCATTTTTCTCATCTTCAAGCCTAATGTCGCTGGACTTAAATCAGCACATTGGCACCTTTGT
*
909403 CATCTTTAAGCCTAATGTTGCTCGCCTTAAATCAGCATATTAGCACCTTTATCATTCTTCTCATC
66 CATCTTTAAGCCTAATATTGCTCGCCTTAAATCAGCATATTAGCACCTTTATCATTCTTCTCATC
* * * *
909468 TTTAAGTCCAATGTTGTTAGCCTTGAATCAATATATTGGCACCTTTGTCATCTTT-AAGCCCAAT
131 TTCAAGTCCAATGTTATTAGCCTTGAATCAACACATTGGCACCTTTGTCAT-TTTGAAGCCCAAT
* *
909532 ATCACTAGTCTTGAATAAGCATATCAGCATCGCTAGCCTTGAATAAGCATATCGGCATCT
195 ATCACTAGCCTTAAATAAGCATATCAGCATCGCTAGCCTTGAATAAGCATATCGGCATCT
*
909592 TTATCATTCTTT-TCATCTTCAAGCCTAATGTCG-TCGGCCTTAAATCAGCACATTGGCACCTTT
1 TTATCATT-TTTCTCATCTTCAAGCCTAATGTCGCT-GGACTTAAATCAGCACATTGGCACCTTT
* * *
909655 GTCATCTTTAAGCCTAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTTATCATTCTTCTCA
64 GTCATCTTTAAGCCTAATATTGCTCGCCTTAAATCAGCATATTAGCACCTTTATCATTCTTCTCA
* *
909720 TCTTCAAGTCCAATGTTATTGGCCTTGAATCAACGCATTGGCACCTTTGTCATTTTGAAGCCCAA
129 TCTTCAAGTCCAATGTTATTAGCCTTGAATCAACACATTGGCACCTTTGTCATTTTGAAGCCCAA
* * * *
909785 TATCGCTAGCCTTAAATCATCATATTAGCATC
194 TATCACTAGCCTTAAATAAGCATATCAGCATC
909817 TTTCTCATTC
Statistics
Matches: 200, Mismatches: 22, Indels: 6
0.88 0.10 0.03
Matches are distributed among these distances:
253 4 0.02
254 193 0.96
255 3 0.01
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.37
Consensus pattern (254 bp):
TTATCATTTTTCTCATCTTCAAGCCTAATGTCGCTGGACTTAAATCAGCACATTGGCACCTTTGT
CATCTTTAAGCCTAATATTGCTCGCCTTAAATCAGCATATTAGCACCTTTATCATTCTTCTCATC
TTCAAGTCCAATGTTATTAGCCTTGAATCAACACATTGGCACCTTTGTCATTTTGAAGCCCAATA
TCACTAGCCTTAAATAAGCATATCAGCATCGCTAGCCTTGAATAAGCATATCGGCATCT
Found at i:909879 original size:367 final size:367
Alignment explanation
Indices: 909193--909885 Score: 960
Period size: 367 Copynumber: 1.9 Consensus size: 367
909183 TAAGTCTAAT
* * *
909193 ATCGCTGGCCTTTAATAAGCATATCGACACCTTTATCGTTTTTCTCATCTTCAAGCCCAATGTCG
1 ATCGCTAGCCTTGAATAAGCATATCGACACCTTTATCATTTTTCTCATCTTCAAGCCCAATGTCG
* * * *
909258 CCAGCCTTGAATTAGCACATTGGCACCTTTGTTATCTTTAAGCCCAATATCGCTGGTCCAGAATT
66 CCAGCCTTAAATCAGCACATTGGCACCTTTGTCATCTTTAAGCCCAATATCGCTGGTCCAGAATC
* * * * * * *
909323 AGCATATTGGCTCCATTATCATTTTTCTCATCTTTAAGTCTAATGTCGCTGGACTTGAATTAGCG
131 AGCATATTGGCACCATTATCATTCTTCTCATCTTCAAGTCCAATGTCACTGGACTTGAATCAACG
* * * *
909388 CATTGGCACCTTTGTCATCTTTAAGCCTAATGTTGCTCGCCTTAAATCAGCATATTAGCACCTTT
196 CATTGGCACCTTTGTCATCTTTAAGCCCAATATCGCTAGCCTTAAATCAGCATATTAGCACCTTT
* * * * * * * *
909453 ATCATTCTTCTCATCTTTAAGTCCAATGTTGTTAGCCTTGAATCAATATATTGGCACCTTTGTCA
261 ATCATTCTTCTCATCTTCAAGCCCAATATCGCTAGCCATGAATCAACATATTGGCACCTTTATCA
909518 TCTTTAAGCCCAATATCACTAGTCTTGAATAAGCATATCAGC
326 TCTTTAAGCCCAATATCACTAGTCTTGAATAAGCATATCAGC
* * *
909560 ATCGCTAGCCTTGAATAAGCATATCGGCATCTTTATCATTCTTT-TCATCTTCAAGCCTAATGTC
1 ATCGCTAGCCTTGAATAAGCATATCGACACCTTTATCATT-TTTCTCATCTTCAAGCCCAATGTC
* * * * *
909624 GTCGGCCTTAAATCAGCACATTGGCACCTTTGTCATCTTTAAGCCTAATATTGCTGG-CCTTGAA
65 GCCAGCCTTAAATCAGCACATTGGCACCTTTGTCATCTTTAAGCCCAATATCGCTGGTCC-AGAA
* * * *
909688 TCAGCATATTGGCACCTTTATCATTCTTCTCATCTTCAAGTCCAATGTTATTGGCCTTGAATCAA
129 TCAGCATATTGGCACCATTATCATTCTTCTCATCTTCAAGTCCAATGTCACTGGACTTGAATCAA
* *
909753 CGCATTGGCACCTTTGTCAT-TTTGAAGCCCAATATCGCTAGCCTTAAATCATCATATTAGCATC
194 CGCATTGGCACCTTTGTCATCTTT-AAGCCCAATATCGCTAGCCTTAAATCAGCATATTAGCACC
* *
909817 TTTCTCATTCTTCTCATCTTCAAGCCCAATATCGCTAGCCATGGATCAACATATTGGCACCTTTA
258 TTTATCATTCTTCTCATCTTCAAGCCCAATATCGCTAGCCATGAATCAACATATTGGCACCTTTA
909882 TCAT
323 TCAT
909886 TCTTCACATC
Statistics
Matches: 281, Mismatches: 42, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
366 5 0.02
367 273 0.97
368 3 0.01
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.36
Consensus pattern (367 bp):
ATCGCTAGCCTTGAATAAGCATATCGACACCTTTATCATTTTTCTCATCTTCAAGCCCAATGTCG
CCAGCCTTAAATCAGCACATTGGCACCTTTGTCATCTTTAAGCCCAATATCGCTGGTCCAGAATC
AGCATATTGGCACCATTATCATTCTTCTCATCTTCAAGTCCAATGTCACTGGACTTGAATCAACG
CATTGGCACCTTTGTCATCTTTAAGCCCAATATCGCTAGCCTTAAATCAGCATATTAGCACCTTT
ATCATTCTTCTCATCTTCAAGCCCAATATCGCTAGCCATGAATCAACATATTGGCACCTTTATCA
TCTTTAAGCCCAATATCACTAGTCTTGAATAAGCATATCAGC
Found at i:910519 original size:33 final size:32
Alignment explanation
Indices: 910380--910812 Score: 263
Period size: 33 Copynumber: 13.5 Consensus size: 32
910370 TAAATGAACA
* * *
910380 AAAGCCCACATAAGTCGGTGGCAACCATTTTCT
1 AAAGCCCACACAAGTCAGTGGCAACC-CTTTCT
** *
910413 CTAGCCTACACAAGTCAGTGGCAACCC-TTCT
1 AAAGCCCACACAAGTCAGTGGCAACCCTTTCT
* ** * *
910444 AGAGCTGACACAAGTCGGTGGCAA-CCTTTCA
1 AAAGCCCACACAAGTCAGTGGCAACCCTTTCT
* * * *
910475 AAAGCCTACATAAGTTAATGGCAACCCTTCTCT
1 AAAGCCCACACAAGTCAGTGGCAACCCTT-TCT
* * ** *
910508 AAAGCTCACATAAGTTGGAGGCAACCC-TTCT
1 AAAGCCCACACAAGTCAGTGGCAACCCTTTCT
*
910539 AAAGCCCACCCAAGTCAGTGGCAA-CCTTTCTTT
1 AAAGCCCACACAAGTCAGTGGCAACCCTTTC--T
* *
910572 AAAGCCTACACAAGTCGGTGGCAACCC-TTCT
1 AAAGCCCACACAAGTCAGTGGCAACCCTTTCT
* *
910603 AAAGCCCACACAAGTCGGTGGCAGCCCTTCTCT
1 AAAGCCCACACAAGTCAGTGGCAACCCTT-TCT
* ** *
910636 AAAGCCCACACAAGTTAGTGATAACCCTTCCTT
1 AAAGCCCACACAAGTCAGTGGCAACCCTTTC-T
** * * **
910669 AATCCCCACAAAAGTCGGTGATAACCCTTCTCT
1 AAAGCCCACACAAGTCAGTGGCAACCCTT-TCT
* * *** *
910702 AAAGCCCAAACATGTC-GATCATAATCCTTCTCT
1 AAAGCCCACACAAGTCAG-TGGCAACCCTT-TCT
* *
910735 AAAGTCCC-CACAAGTCGGTGGCAA-CCTATCT
1 AAAG-CCCACACAAGTCAGTGGCAACCCTTTCT
* * * ** *
910766 AAAGACCACCCAAATTGGTAGCAACCC-TTCT
1 AAAGCCCACACAAGTCAGTGGCAACCCTTTCT
*
910797 GAAGCCCACACAAGTC
1 AAAGCCCACACAAGTC
910813 GGTCACACAA
Statistics
Matches: 312, Mismatches: 72, Indels: 34
0.75 0.17 0.08
Matches are distributed among these distances:
30 6 0.02
31 126 0.40
32 13 0.04
33 160 0.51
34 7 0.02
ACGTcount: A:0.30, C:0.31, G:0.16, T:0.22
Consensus pattern (32 bp):
AAAGCCCACACAAGTCAGTGGCAACCCTTTCT
Found at i:910532 original size:64 final size:64
Alignment explanation
Indices: 910380--911153 Score: 439
Period size: 64 Copynumber: 11.8 Consensus size: 64
910370 TAAATGAACA
* * * ** *
910380 AAAGCCCACATAAGTCGGTGGCAACCATTTTCTCTAGCCTACACAAGTCAGTGGCAACCC-T-TC
1 AAAGCTCACACAAGTCGGTGGCAACC--CTTCTAAAGCCCACACAAGTCAGTGGCAACCCTTCTC
910443 T
64 T
* * * * * * * *
910444 AGAGCTGACACAAGTCGGTGGCAACCTTTCAAAAGCCTACATAAGTTAATGGCAACCCTTCTCT
1 AAAGCTCACACAAGTCGGTGGCAACCCTTCTAAAGCCCACACAAGTCAGTGGCAACCCTTCTCT
* * * * * *
910508 AAAGCTCACATAAGTTGGAGGCAACCCTTCTAAAGCCCACCCAAGTCAGTGGCAACCTTTCTTT
1 AAAGCTCACACAAGTCGGTGGCAACCCTTCTAAAGCCCACACAAGTCAGTGGCAACCCTTCTCT
* *
910572 AAAGC-CTACACAAGTCGGTGGCAACCCTTCTAAAGCCCACACAAGTCGGTGGCAGCCCTTCTCT
1 AAAGCTC-ACACAAGTCGGTGGCAACCCTTCTAAAGCCCACACAAGTCAGTGGCAACCCTTCTCT
* ** ** ** * * **
910636 AAAGCCCACACAAGTTAGTGATAACCCTTCCTTAATCCCCACAAAAGTCGGTGATAACCCTTCTC
1 AAAGCTCACACAAGTCGGTGGCAACCCTT-C-TAAAGCCCACACAAGTCAGTGGCAACCCTTCTC
910701 T
64 T
* * * * *** * * *
910702 AAAGCCCAAACATGTCGATCATAATCCTTCTCTAAAGTCCC-CACAAGTCGGTGGCAA-CC-TAT
1 AAAGCTCACACAAGTCGGTGGCAA-CCCT-TCTAAAG-CCCACACAAGTCAGTGGCAACCCTTCT
910764 CT
63 CT
* * * * *
910766 AAAGAC-CACCCAAATTGGTAGCAACCCTTCTGAAGCCCACACAAGTCGGTCACACAAGTCAGTG
1 AAAG-CTCACACAAGTCGGTGGCAACCCTTCTAAAGCCCACACAA----GT----C-AGT--G-G
** * *
910830 GCAACCAT-TCT
53 CAACCCTTCTCT
* * * **
910841 AAAGCCCACACAAGTTC-GTAGCAACCCTTATCTAAAGCCCACAGATA-TTGGTGGCAACCC-T-
1 AAAGCTCACACAAG-TCGGTGGCAACCC-T-TCTAAAGCCCACACA-AGTCAGTGGCAACCCTTC
910902 TCT
62 TCT
* * * * *
910905 AAAGCCCACACAAGTCGGTGGCAACTCCCTTCAAAAGCCCACATAGGTCAGTGGCAACTCTT-TC
1 AAAGCTCACACAAGTCGGTGGCAA--CCCTTCTAAAGCCCACACAAGTCAGTGGCAACCCTTCTC
*
910969 A
64 T
* * * * ** *
910970 AAAGCCCACATAAGTCGGTGGCAA-CCTTCTTTAAAAGCCTACACAAGTCGGTGATAACTC-TCT
1 AAAGCTCACACAAGTCGGTGGCAACCCTTC--T-AAAGCCCACACAAGTCAGTGGCAACCCTTCT
*
911033 CA
63 CT
* * *
911035 AAAGCCCACACAAGTCAGTGGCAACCCTTCTAAAGCCCACACAAGTCAGTGGCAACCCCTT-TCA
1 AAAGCTCACACAAGTCGGTGGCAACCCTTCTAAAGCCCACACAAGTCAGTGGCAA-CCCTTCTCT
* * *
911099 AAAGCCCACACAAGTCGGTGGCAACTCTT-TGAAAAGCCCACACAAGTCGGTGGCA
1 AAAGCTCACACAAGTCGGTGGCAACCCTTCT--AAAGCCCACACAAGTCAGTGGCA
911154 TTTTCTTCTA
Statistics
Matches: 561, Mismatches: 105, Indels: 87
0.75 0.14 0.12
Matches are distributed among these distances:
61 3 0.01
62 42 0.07
63 28 0.05
64 250 0.45
65 105 0.19
66 73 0.13
67 7 0.01
68 3 0.01
70 1 0.00
71 2 0.00
73 2 0.00
74 3 0.01
75 25 0.04
76 3 0.01
77 13 0.02
78 1 0.00
ACGTcount: A:0.31, C:0.31, G:0.17, T:0.21
Consensus pattern (64 bp):
AAAGCTCACACAAGTCGGTGGCAACCCTTCTAAAGCCCACACAAGTCAGTGGCAACCCTTCTCT
Found at i:910866 original size:75 final size:77
Alignment explanation
Indices: 910743--910883 Score: 198
Period size: 75 Copynumber: 1.9 Consensus size: 77
910733 CTAAAGTCCC
* * * *
910743 CACAAGTCGGTGGCAACCTATCTAAAGACCACCCAAATTGGTAGCAACCC-T-TCTGAAGCCCAC
1 CACAAGTCAGTGGCAACCTATCTAAAGACCACACAAATTCGTAGCAACCCTTATCTAAAGCCCAC
910806 ACAAGTCGGTCA
66 ACAAGTCGGTCA
* *
910818 CACAAGTCAGTGGCAACC-ATTCTAAAGCCCACACAAGTTCGTAGCAACCCTTATCTAAAGCCCA
1 CACAAGTCAGTGGCAACCTA-TCTAAAGACCACACAAATTCGTAGCAACCCTTATCTAAAGCCCA
910882 CA
65 CA
910884 GATATTGGTG
Statistics
Matches: 57, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
74 1 0.02
75 43 0.75
76 1 0.02
77 12 0.21
ACGTcount: A:0.33, C:0.33, G:0.16, T:0.18
Consensus pattern (77 bp):
CACAAGTCAGTGGCAACCTATCTAAAGACCACACAAATTCGTAGCAACCCTTATCTAAAGCCCAC
ACAAGTCGGTCA
Found at i:910880 original size:33 final size:32
Alignment explanation
Indices: 910816--911153 Score: 355
Period size: 33 Copynumber: 10.5 Consensus size: 32
910806 ACAAGTCGGT
* * *
910816 CACACAAGTCAGTGGCAA-CCATTCTAAAGCC
1 CACACAAGTCGGTGGCAACCCTTTCAAAAGCC
* *
910847 CACACAAGTTC-GTAGCAACCCTTATCTAAAGCC
1 CACACAAG-TCGGTGGCAACCCTT-TCAAAAGCC
* * *
910880 CACAGATA-TTGGTGGCAACCC-TTCTAAAGCC
1 CACACA-AGTCGGTGGCAACCCTTTCAAAAGCC
*
910911 CACACAAGTCGGTGGCAACTCCCTTCAAAAGCC
1 CACACAAGTCGGTGGCAAC-CCTTTCAAAAGCC
* * * *
910944 CACATAGGTCAGTGGCAACTCTTTCAAAAGCC
1 CACACAAGTCGGTGGCAACCCTTTCAAAAGCC
*
910976 CACATAAGTCGGTGGCAACCTTCTTT-AAAAGCC
1 CACACAAGTCGGTGGCAACC--CTTTCAAAAGCC
* ** * *
911009 TACACAAGTCGGTGATAACTCTCTCAAAAGCC
1 CACACAAGTCGGTGGCAACCCTTTCAAAAGCC
* *
911041 CACACAAGTCAGTGGCAACCC-TTCTAAAGCC
1 CACACAAGTCGGTGGCAACCCTTTCAAAAGCC
*
911072 CACACAAGTCAGTGGCAACCCCTTTCAAAAGCC
1 CACACAAGTCGGTGGCAA-CCCTTTCAAAAGCC
* *
911105 CACACAAGTCGGTGGCAACTCTTTGAAAAGCC
1 CACACAAGTCGGTGGCAACCCTTTCAAAAGCC
911137 CACACAAGTCGGTGGCA
1 CACACAAGTCGGTGGCA
911154 TTTTCTTCTA
Statistics
Matches: 261, Mismatches: 33, Indels: 25
0.82 0.10 0.08
Matches are distributed among these distances:
30 1 0.00
31 67 0.26
32 92 0.35
33 96 0.37
34 5 0.02
ACGTcount: A:0.32, C:0.31, G:0.18, T:0.19
Consensus pattern (32 bp):
CACACAAGTCGGTGGCAACCCTTTCAAAAGCC
Found at i:910993 original size:65 final size:64
Alignment explanation
Indices: 910816--911153 Score: 344
Period size: 65 Copynumber: 5.3 Consensus size: 64
910806 ACAAGTCGGT
* * * * *
910816 CACACAAGTCAGTGGCAAC-CATTCTAAAGCCCACACAAGTTC-GTAGCAACCCTTATCTAAAGC
1 CACACAAGTCAGTGGCAACTCTTTCAAAAGCCCACACAAG-TCGGTGGCAACCCCT-TCAAAAGC
910879 C
64 C
* ** * *
910880 CACAGATA-TTGGTGGCAAC-CCTTCTAAAGCCCACACAAGTCGGTGGCAACTCCCTTCAAAAGC
1 CACACA-AGTCAGTGGCAACTCTTTCAAAAGCCCACACAAGTCGGTGGCAAC-CCCTTCAAAAGC
910943 C
64 C
* * * * *
910944 CACATAGGTCAGTGGCAACTCTTTCAAAAGCCCACATAAGTCGGTGGCAACCTTCTTTAAAAGCC
1 CACACAAGTCAGTGGCAACTCTTTCAAAAGCCCACACAAGTCGGTGGCAACC-CCTTCAAAAGCC
* * ** * * *
911009 TACACAAGTCGGTGATAACTCTCTCAAAAGCCCACACAAGTCAGTGGCAA-CCCTTCTAAAGCC
1 CACACAAGTCAGTGGCAACTCTTTCAAAAGCCCACACAAGTCGGTGGCAACCCCTTCAAAAGCC
* * * *
911072 CACACAAGTCAGTGGCAACCCCTTTCAAAAGCCCACACAAGTCGGTGGCAACTCTTTGAAAAGCC
1 CACACAAGTCAGTGGCAA-CTCTTTCAAAAGCCCACACAAGTCGGTGGCAACCCCTTCAAAAGCC
*
911137 CACACAAGTCGGTGGCA
1 CACACAAGTCAGTGGCA
911154 TTTTCTTCTA
Statistics
Matches: 226, Mismatches: 40, Indels: 15
0.80 0.14 0.05
Matches are distributed among these distances:
63 25 0.11
64 93 0.41
65 108 0.48
ACGTcount: A:0.32, C:0.31, G:0.18, T:0.19
Consensus pattern (64 bp):
CACACAAGTCAGTGGCAACTCTTTCAAAAGCCCACACAAGTCGGTGGCAACCCCTTCAAAAGCC
Found at i:911141 original size:96 final size:96
Alignment explanation
Indices: 910816--911153 Score: 382
Period size: 96 Copynumber: 3.5 Consensus size: 96
910806 ACAAGTCGGT
* * * *
910816 CACACAAGTCAGTGGCAAC-CATTCTAAAGCCCACACAAGTTC-GTAGCAACCCTTATCTAAAGC
1 CACACAAGTCGGTGGCAACTCTTTCAAAAGCCCACACAAG-TCAGTGGCAACCC-T-TCTAAAGC
* * *
910879 CCACAGATA-TTGGTGGCAA-CCC-TTCTAAAGCC
63 CCACACA-AGTCGGTGGCAACCCCTTTCAAAAGCC
* * * * *
910911 CACACAAGTCGGTGGCAACTCCCTTCAAAAGCCCACATAGGTCAGTGGCAACTCTTTCAAAAGCC
1 CACACAAGTCGGTGGCAACT-CTTTCAAAAGCCCACACAAGTCAGTGGCAAC-CCTTCTAAAGCC
* *
910976 CACATAAGTCGGTGGCAACCTTCTTT-AAAAGCC
64 CACACAAGTCGGTGGCAACC-CCTTTCAAAAGCC
* ** *
911009 TACACAAGTCGGTGATAACTCTCTCAAAAGCCCACACAAGTCAGTGGCAACCCTTCTAAAGCCCA
1 CACACAAGTCGGTGGCAACTCTTTCAAAAGCCCACACAAGTCAGTGGCAACCCTTCTAAAGCCCA
*
911074 CACAAGTCAGTGGCAACCCCTTTCAAAAGCC
66 CACAAGTCGGTGGCAACCCCTTTCAAAAGCC
* *
911105 CACACAAGTCGGTGGCAACTCTTTGAAAAGCCCACACAAGTCGGTGGCA
1 CACACAAGTCGGTGGCAACTCTTTCAAAAGCCCACACAAGTCAGTGGCA
911154 TTTTCTTCTA
Statistics
Matches: 204, Mismatches: 30, Indels: 17
0.81 0.12 0.07
Matches are distributed among these distances:
95 23 0.11
96 102 0.50
97 52 0.25
98 25 0.12
99 2 0.01
ACGTcount: A:0.32, C:0.31, G:0.18, T:0.19
Consensus pattern (96 bp):
CACACAAGTCGGTGGCAACTCTTTCAAAAGCCCACACAAGTCAGTGGCAACCCTTCTAAAGCCCA
CACAAGTCGGTGGCAACCCCTTTCAAAAGCC
Found at i:911345 original size:113 final size:112
Alignment explanation
Indices: 911221--911967 Score: 451
Period size: 113 Copynumber: 6.4 Consensus size: 112
911211 TATTTCTTTC
* * * * * *
911221 TAAGCCCAATGTCGCTAGCCTTGAATCAACAAATTTGCACCTTTTTCTTTCTTAAGTCTAATATC
1 TAAGCCCAATGTCGCTAGCCTTGAATCAACATATTGGCACCTTTGTC-ATCTTAAGCCCAATATC
* *
911286 GTTGGCCTTGAATAAGCATATCGACACCTTTATCATTTTTCTCATCTT
65 GCTGGCCTTGAATAAGCATATCGGCACCTTTATCATTTTTCTCATCTT
* * *
911334 CAAGCCCAATGTCGCTAGCCTTGAATTAGCATATTGGCACCTTTGTCATCTCTAAGCCCAATATC
1 TAAGCCCAATGTCGCTAGCCTTGAATCAACATATTGGCACCTTTGTCATCT-TAAGCCCAATATC
* ** * *
911399 -CTGGCCCTGAATTGGCATATTGGCACCATTATCATTTTTCTCATCTT
65 GCTGGCCTTGAATAAGCATATCGGCACCTTTATCATTTTTCTCATCTT
* * * * * * ** * *
911446 TAAGTCTAATGTCGCTGGACTTGAATTAGCGCATTGGCACCTTTGTCATCTTTAAGCCTAATATT
1 TAAGCCCAATGTCGCTAGCCTTGAATCAACATATTGGCACCTTTGTCATC-TTAAGCCCAATATC
* ** * * * * *
911511 ACTCACCTTAAATCAGCATATTGGCACCTTTATCATTCTTCTCGTCTT
65 GCTGGCCTTGAATAAGCATATCGGCACCTTTATCATTTTTCTCATCTT
* * * ** *
911559 TAAGTCCAATGTTGTTAGCCTTGAATCAATGTATTGGCACCTTTGTCATTTTTAAGCCCAATATC
1 TAAGCCCAATGTCGCTAGCCTTGAATCAACATATTGGCACCTTTGTCA-TCTTAAGCCCAATATC
* * * ** * *
911624 GCTAGCCTTGAATAAGCATATCAGCATTGCTAGCCTTCAATAAGCATATCGGCATCTTT
65 GCTGGCCTTGAATAAGCATATC-G----GC-A-CCTT-TATCA-TTTTTC-TCATC-TT
* * * * *
911683 ATAATTCTTCTC-ATCTTCAAGCCTAATGTCGC-T-AAACAGCACATTGGCACCTTTGTCATCTT
1 -TAA-GC--C-CAAT-GTC--G-CT-A-G-C-CTTGAATCAACATATTGGCACCTTTGTCATC-T
* * * * * * *
911745 TAAGCCTAATATTGCTGGCCTTGAATCAGTATATTGGCACCTTTGTCATTATTCTCATCTT
52 TAAGCCCAATATCGCTGGCCTTGAATAAGCATATCGGCACCTTTATCATTTTTCTCATCTT
* * *** * * * ** *
911806 GAAGTCCAATGTTATTGGGCTTGAATCAGCGCATTGGCACCTTTGTCATTTTGAAGCCCAATATC
1 TAAGCCCAATGTCGCTAGCCTTGAATCAACATATTGGCACCTTTGTCATCTT-AAGCCCAATATC
* * ** * * *
911871 GCTGGCCTTAAATCAGCATATTAGCATCTTTCTCATTCTTCTCAT-TT
65 GCTGGCCTTGAATAAGCATATCGGCACCTTTATCATTTTTCTCATCTT
* * * *
911918 TCAAGCCCAATATCGCTAGCCATGGATCAACATATTGGCACCTTTATCAT
1 T-AAGCCCAATGTCGCTAGCCTTGAATCAACATATTGGCACCTTTGTCAT
911968 TCTTCACATC
Statistics
Matches: 481, Mismatches: 119, Indels: 68
0.72 0.18 0.10
Matches are distributed among these distances:
111 1 0.00
112 102 0.21
113 267 0.56
114 2 0.00
115 1 0.00
118 4 0.01
119 4 0.01
120 4 0.01
121 3 0.01
122 4 0.01
123 5 0.01
124 6 0.01
125 5 0.01
126 2 0.00
127 4 0.01
128 4 0.01
129 4 0.01
131 1 0.00
132 1 0.00
133 3 0.01
134 51 0.11
135 2 0.00
136 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.36
Consensus pattern (112 bp):
TAAGCCCAATGTCGCTAGCCTTGAATCAACATATTGGCACCTTTGTCATCTTAAGCCCAATATCG
CTGGCCTTGAATAAGCATATCGGCACCTTTATCATTTTTCTCATCTT
Found at i:911365 original size:61 final size:60
Alignment explanation
Indices: 911262--911494 Score: 198
Period size: 61 Copynumber: 4.0 Consensus size: 60
911252 AATTTGCACC
* * * * * * * *
911262 TTTTTCT-TTCTTAAGTCTAATATCGTTGGCCTTGAATAAGCATATCGACACCTTTATCA
1 TTTTTCTCATCTTAAGCCCAATGTCGCTGGCCTTGAATTAGCATATTGGCACCTTTATCA
* *
911321 TTTTTCTCATCTTCAAGCCCAATGTCGCTAGCCTTGAATTAGCATATTGGCACCTTTGTCA
1 TTTTTCTCATCTT-AAGCCCAATGTCGCTGGCCTTGAATTAGCATATTGGCACCTTTATCA
* * * *
911382 ------TC-TC-TAAGCCCAATATC-CTGGCCCTGAATTGGCATATTGGCACCATTATCA
1 TTTTTCTCATCTTAAGCCCAATGTCGCTGGCCTTGAATTAGCATATTGGCACCTTTATCA
* * * ** *
911433 TTTTTCTCATCTTTAAGTCTAATGTCGCTGGACTTGAATTAGCGCATTGGCACCTTTGTCA
1 TTTTTCTCATC-TTAAGCCCAATGTCGCTGGCCTTGAATTAGCATATTGGCACCTTTATCA
911494 T
1 T
911495 CTTTAAGCCT
Statistics
Matches: 136, Mismatches: 26, Indels: 22
0.74 0.14 0.12
Matches are distributed among these distances:
51 29 0.21
52 11 0.08
53 1 0.01
54 2 0.01
55 2 0.01
57 2 0.01
58 2 0.01
59 7 0.05
60 14 0.10
61 66 0.49
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.38
Consensus pattern (60 bp):
TTTTTCTCATCTTAAGCCCAATGTCGCTGGCCTTGAATTAGCATATTGGCACCTTTATCA
Found at i:911421 original size:51 final size:52
Alignment explanation
Indices: 911327--911425 Score: 139
Period size: 51 Copynumber: 1.9 Consensus size: 52
911317 ATCATTTTTC
* *
911327 TCATCTTCAAGCCCAATGTCGCTAGCCTTGAATTAGCATATTGGCACCTTTG
1 TCATCTTCAAGCCCAATATCGCTAGCCCTGAATTAGCATATTGGCACCTTTG
* *
911379 TCATC-TCTAAGCCCAATATC-CTGGCCCTGAATTGGCATATTGGCACC
1 TCATCTTC-AAGCCCAATATCGCTAGCCCTGAATTAGCATATTGGCACC
911426 ATTATCATTT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
51 26 0.62
52 16 0.38
ACGTcount: A:0.23, C:0.29, G:0.17, T:0.30
Consensus pattern (52 bp):
TCATCTTCAAGCCCAATATCGCTAGCCCTGAATTAGCATATTGGCACCTTTG
Found at i:911656 original size:28 final size:28
Alignment explanation
Indices: 911624--911678 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
911614 GCCCAATATC
*
911624 GCTAGCCTTGAATAAGCATATCAGCATT
1 GCTAGCCTTCAATAAGCATATCAGCATT
*
911652 GCTAGCCTTCAATAAGCATATCGGCAT
1 GCTAGCCTTCAATAAGCATATCAGCAT
911679 CTTTATAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (28 bp):
GCTAGCCTTCAATAAGCATATCAGCATT
Found at i:911952 original size:61 final size:61
Alignment explanation
Indices: 911851--911972 Score: 163
Period size: 61 Copynumber: 2.0 Consensus size: 61
911841 GGCACCTTTG
* * * * * *
911851 TCATTTTGAAGCCCAATATCGCTGGCCTTAAATCAGCATATTAGCATCTTTCTCATTCTTC
1 TCATTTTCAAGCCCAATATCGCTAGCCATAAATCAACATATTAGCACCTTTATCATTCTTC
** *
911912 TCATTTTCAAGCCCAATATCGCTAGCCATGGATCAACATATTGGCACCTTTATCATTCTTC
1 TCATTTTCAAGCCCAATATCGCTAGCCATAAATCAACATATTAGCACCTTTATCATTCTTC
911973 ACATCTTTAA
Statistics
Matches: 52, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
61 52 1.00
ACGTcount: A:0.25, C:0.27, G:0.11, T:0.36
Consensus pattern (61 bp):
TCATTTTCAAGCCCAATATCGCTAGCCATAAATCAACATATTAGCACCTTTATCATTCTTC
Found at i:912879 original size:15 final size:15
Alignment explanation
Indices: 912845--912878 Score: 61
Period size: 14 Copynumber: 2.3 Consensus size: 15
912835 AATAATAAGT
912845 AAAAATCAAAAGTAA
1 AAAAATCAAAAGTAA
912860 AAAAAT-AAAAGTAA
1 AAAAATCAAAAGTAA
912874 AAAAA
1 AAAAA
912879 AAATCATCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 13 0.68
15 6 0.32
ACGTcount: A:0.79, C:0.03, G:0.06, T:0.12
Consensus pattern (15 bp):
AAAAATCAAAAGTAA
Found at i:932607 original size:43 final size:43
Alignment explanation
Indices: 932476--933214 Score: 642
Period size: 42 Copynumber: 17.4 Consensus size: 43
932466 TAAACTTCTA
* * * *
932476 GAGACTTTCCTAT-CCTTAGTTTGCCTATCGACTTTGACCCTG
1 GAGACTTTCTTATCCCTTAGTCTGCCTGTCGGCTTTGACCCTG
* * * * * * * *
932518 GAGACTTTGTTA-CCCTCAGTTTTCCTATCAGCTTTGAACTTG
1 GAGACTTTCTTATCCCTTAGTCTGCCTGTCGGCTTTGACCCTG
* * *
932560 GAGACTTTCTTATCCCTTAGTCTACTTGTCGGCTTTGACCCTA
1 GAGACTTTCTTATCCCTTAGTCTGCCTGTCGGCTTTGACCCTG
* **
932603 GAGACTTTCCTATCCCTTAGTCTGCCTGTTAGCTTTGACCCTG
1 GAGACTTTCTTATCCCTTAGTCTGCCTGTCGGCTTTGACCCTG
* * * * * * *
932646 AAAACTTTCCT-TCCCTTAGTCTGCTTGTTGACTTTGACCCTA
1 GAGACTTTCTTATCCCTTAGTCTGCCTGTCGGCTTTGACCCTG
* * * *
932688 GAGACTTTCTT-TCCCTCAGTTTGCCTGTCGACTTTGACCCTA
1 GAGACTTTCTTATCCCTTAGTCTGCCTGTCGGCTTTGACCCTG
* * *
932730 GAGACTTTCCTA-CCCTTAGTCTGCCTGTCGACTTTGACCTTG
1 GAGACTTTCTTATCCCTTAGTCTGCCTGTCGGCTTTGACCCTG
* * * *
932772 GAGACTGTCTTAT-CCTTAGTCTGCCTGTCAGCTTTAACCCTA
1 GAGACTTTCTTATCCCTTAGTCTGCCTGTCGGCTTTGACCCTG
* * * *
932814 GAGACTTCCCT-TCCTTTAGTCTGCCTGTTGGCTTTGACCCTG
1 GAGACTTTCTTATCCCTTAGTCTGCCTGTCGGCTTTGACCCTG
* * * * * * ** *
932856 AAGACTTTCTT-CCCCTCAATCTACCTATCAACTTTGACCCTA
1 GAGACTTTCTTATCCCTTAGTCTGCCTGTCGGCTTTGACCCTG
* * **
932898 GAGACTTT-TT-TACCTTAGTCTGCCTATCGGCTTTGACGTTG
1 GAGACTTTCTTATCCCTTAGTCTGCCTGTCGGCTTTGACCCTG
* * **
932939 GAGACTTT-TCTATCCCTTAGTCTACCTGTTGGCTTTGACTTTG
1 GAGACTTTCT-TATCCCTTAGTCTGCCTGTCGGCTTTGACCCTG
* * * *
932982 GAGACTTTCCTATCCCTTAGTCTGCCTGTCAGCTTTAACCTTG
1 GAGACTTTCTTATCCCTTAGTCTGCCTGTCGGCTTTGACCCTG
* * *
933025 GAGACTTTCTT-TCTCTTAGTCTGTCTGTCGGCTTTGACCCTA
1 GAGACTTTCTTATCCCTTAGTCTGCCTGTCGGCTTTGACCCTG
* * * * * *
933067 GAGACTTTTTTTTTCCTTAGTCTGCTTGTCGACTTTGACCTTG
1 GAGACTTTCTTATCCCTTAGTCTGCCTGTCGGCTTTGACCCTG
* * * * *
933110 GAGACTTTCCTA-CCCTTAATCTGCTTGTTGGCTTTGACCATG
1 GAGACTTTCTTATCCCTTAGTCTGCCTGTCGGCTTTGACCCTG
* * *
933152 GAGACTTTCTTATCCCTAAAGT-TGGCATGTCGACTTTGACCCTG
1 GAGACTTTCTTATCCCT-TAGTCT-GCCTGTCGGCTTTGACCCTG
*
933196 GAGACTTTCCTATCCCTTA
1 GAGACTTTCTTATCCCTTA
933215 TTTTCTCTCG
Statistics
Matches: 561, Mismatches: 124, Indels: 23
0.79 0.18 0.03
Matches are distributed among these distances:
41 33 0.06
42 316 0.56
43 178 0.32
44 34 0.06
ACGTcount: A:0.16, C:0.28, G:0.17, T:0.39
Consensus pattern (43 bp):
GAGACTTTCTTATCCCTTAGTCTGCCTGTCGGCTTTGACCCTG
Found at i:937016 original size:475 final size:474
Alignment explanation
Indices: 936123--952274 Score: 9650
Period size: 474 Copynumber: 33.7 Consensus size: 474
936113 AGTCCATGAC
* * * * * * * * *
936123 ACCAAGAACATATTCCTTTCATTAGGGTGCATGACATTGATGTTTTAGTGTCACAAGAAAAACTT
1 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
* * ** * * * * * * * *
936188 TTATTTTCACTGTTTTTAATAGAATCAAAGTTTACCTCTTAAGTAAGACAACCATTAATAATTAA
66 TTCTTTCCACCATTTTTGATAGAATCAAAGTTT--GTCTCAAATAAGACAACCATGAATACTCAT
* * * **
936253 ACAAATCCCCATTTTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCTTTAGGATACATGGCA
129 ACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATA
* *
936318 TTGATGCTTTGGTTTC-ACAAGAAAGGCTTTTTTCCCACCAATTTTCGTAAAGTCTAAGCTCATG
194 TTGATGCTTTGGTTTCGA-AAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATG
* * *
936382 CCTCAAATGAGACAAACATGGATTTTACTAAGGATTTTCATTCATTTTGTGATTGGGCACTATAA
258 CCTCAAATGAGACAAACATGGATTCTAGTAAGGATTTTCATTCATTTTGTGATTAGGCACTATAA
* * * *
936447 ACATATTCTCCTCATTATGATAAATGATATTGATGATTTTCTTTTGCATGGAAATATTTTCTTTG
323 ACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTG
* * * * *
936512 CCCTATTTTCCTAAAAATCAAATTTCATCCCTTAAATATA-ACAAGAATTGATTGC-CGTAATAG
388 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATA-AGACAAGCATCGATT-CTCGTAACAG
* *
936575 TCTTCATTCTTTTCAAAATT-GGA
451 TCTCCATTCTTTTCAAGATTGGGA
* * * * * * *
936598 ATCAAGAACCCATTCACTTCATTAGGGTGCATGACATTGATGCTTTGGTGTCGCAAGAAAAACTT
1 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
* * * * *
936663 TTATTTCCACTATTTTTGATAGAATCAAAGTTTACGTCTCAAATAAGACGACCATGAAGACTCAA
66 TTCTTTCCACCATTTTTGATAGAATCAAAGTTT--GTCTCAAATAAGACAACCATGAATACTCAT
* *
936728 ACTAATTCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCTTTAGGATACATGATA
129 ACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATA
* * * * *
936793 TTGATGCTTTGCTTTCGAAAGAACGGCTTTTTTCCTACCAATTTTTGTAATGTCTAACTTCATGC
194 TTGATGCTTTGGTTTCGAAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC
* * * * *
936858 CTCAAATGAGACAAACATAGATTCTAGTAAGGATTTTCATTTATTTTATGATTAGGCACAAAAAA
259 CTCAAATGAGACAAACATGGATTCTAGTAAGGATTTTCATTCATTTTGTGATTAGGCACTATAAA
* * * * ** *
936923 CACAATCTCCTCATTAGGATAAATGATATTGATGATTCTCTTTTGTATGAAAATCTTCTCCATGT
324 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGC
** * * *
936988 TGTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACGAGCATCAATTCTCGTAACAAT-T
389 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCT
** *
937052 ATATTCTATTCCAA-ATTGGGA
454 CCATTCT-TTTCAAGATTGGGA
* * * * *
937073 ACCAAAAATACATTCCCTTCATTATGATACATGACATT-ATTGGTTTGGTGTCGCAAGAAATGTT
1 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGA-TGCTTTGGTGTCGCAAGAAAAGCT
* * * * * * *
937137 TTTCTTTCTAGCATTTTTTATAGAATCCAAGTTTGTCTCTTAAATAACATAAACATGAAT-CGTC
65 TTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTC--AAATAAGACAACCATGAATAC-TC
* ** *
937201 ATACTAATCCCCATTATTTTC-AGTATTACACACCATAAACATAGTCTT-TTATTAGGATACATG
127 ATACTAATCCCCATTCTTTTCAAG-ATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATG
* * * * * *
937264 ATATTGATGCTTTGATTTGGCAAGTAAGGATTTTTTCCCACCAATTTTTGCAAAGTCTAAGTTCA
191 ATATTGATGCTTTGGTTTCGAAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCA
* * *
937329 TGCCTCAAATGAGACAAAGATGGATTCTAGTAAGGATTTTCATTCATTTTGTGATTAAGCACAAT
256 TGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATTTTCATTCATTTTGTGATTAGGCACTAT
* * * * *
937394 AAACACCTTCTCCTCATCAGGATAAATGACATTGATGATTTTCTTTTGCAT-AGAAGTATTTTCT
321 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGA-AAATCTTTTCT
* * * * *
937458 TTGCCCTATTTCCCATAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTATCGTAACA
385 TTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACA
* * *
937523 GTCTCCATCCTATTCATGATTGGGA
450 GTCTCCATTCTTTTCAAGATTGGGA
* * * * * *
937548 ACCAAAAACATATTCCCTACATTAGGACACCTGACATTGATGC-TTGGCGTCACAAGAAAAGCTT
1 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
* ** * * * *
937612 TTCTTTCAACTGTTTTTGATAGAATCAAAGTTTATCTCCTCAATAAGACAAACATGAATAGTCAT
66 TTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCT-C-AAATAAGACAACCATGAATACTCAT
** * * *
937677 ACTAATTTCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCACATAAAGATACATGATA
129 ACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATA
* * ** * * * * **
937742 TTGGTGCTTTGGTTTTGCTAG-AAGGCTTCGTTT-CCACCAATTTTTGTGAACTCTAAATTTGTG
194 TTGATGCTTTGGTTTCGAAAGAAAGGCTT-TTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATG
* * * * * * *
937805 CCCCAAATGAGACAAACATGGATTCTATTAATGATCTTCTTTCATTTTGAGATTAAGCACTATAA
258 CCTCAAATGAGACAAACATGGATTCTAGTAAGGATTTTCATTCATTTTGTGATTAGGCACTATAA
* * * * *
937870 ACACATTCTCCTCTTTAGGACAAATGCTATTGATGATTTTCTTTTGCATG-GAATCTTTTC-TTA
323 ACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTG
* * * * ** *
937933 CCCTATTTTCCTTAAAATCAAAATTAATCCC-TAAATATGGCAAGCATCGATTCTAATAATAGTC
388 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTC
* *
937997 CCCACTCTTTTCAAGATTGGGA
453 TCCATTCTTTTCAAGATTGGGA
* * * ** *
938019 ACCAAGAACACATCCCCTTTATTAGGATACATGACATTGATGCTTTGGCAATAG-AAGAAAAGCT
1 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGG-TGTCGCAAGAAAAGCT
* * *
938083 TTTATTTCCACCATTTTTGATAGAATCAAAGTTTGTCTTGTAAATAAGGCAACCATGAATACTCA
65 TTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTC-T-CAAATAAGACAACCATGAATACTCA
* * * * *** * * *
938148 TACTAATCCCCTTTCTTTTCAGGATTAGGCACCGTTATTGTAGTCTTCTCCTAAGGATACAAGAT
128 TACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGAT
* * * *
938213 ATTGATGCTTTAGTTTTGAAAGCAAGGCTTTTTTCCC-CCTAATTTTTGTAAAGTCTATGTTCAT
193 ATTGATGCTTTGGTTTCGAAAGAAAGGCTTTTTTCCCACC-AATTTTTGTAAAGTCTAAGTTCAT
* * * * * *
938277 GACTGAAATGAGACAAACATGGATTCTAGTAATGATCTTAATTCATTCTGTGATTAGGCACTATA
257 GCCTCAAATGAGACAAACATGGATTCTAGTAAGGATTTTCATTCATTTTGTGATTAGGCACTATA
* * * * * * *
938342 AACATATTCTTCTCGTTAGGATAAATGATGTTAAAGATTTTCTTTTGCATGAAAATCTTTTTTTT
322 AACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATC--TTTTCT
* * * * **
938407 TTGCCCTATTTTCCTTAAAATCAAAGTTCATCTCTTAAATAAGGCAAGCCTAGATTCTTATAACA
385 TTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACA
*
938472 GTCTCCATTCTTTTCAAGAGTGGGA
450 GTCTCCATTCTTTTCAAGATTGGGA
* * * * *
938497 ACC-AAAACTACATTTCGTTCATTAGGATACATGACACTGATGCTTTAGTGTTGCAAGAAAAGCT
1 ACCAAAAAC-ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCT
* *
938561 TTTCTTTCCACCGTTATTGATAGAATGC-AAGTTTGTCTCATAAATAAGACAACCATGAAT-CTC
65 TTTCTTTCCACCATTTTTGATAGAAT-CAAAGTTTGTCTC--AAATAAGACAACCATGAATACTC
* * * * * * * *
938624 ATACTAATCCGCATTCTTTTCAGGATTGGGCACCATAAACATAGTTTTCCCATTAGGGTATAGGA
127 ATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGA
* * * *
938689 TATTTATGCTTTGGTTTCAAAAGAAAGGCTTTTTTCCCACTAATTTTTGTAAAGTCTAAGTTCAC
192 TATTGATGCTTTGGTTTCGAAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCAT
* * *
938754 GCCTCAAATGAAACAAACATGGATTCTAGTAAGGATCTTCATTCATTTTATGATTAGGCA-TAAT
257 GCCTCAAATGAGACAAACATGGATTCTAGTAAGGATTTTCATTCATTTTGTGATTAGGCACT-AT
* * * * *
938818 AAACATATTCTCCTCTTTAGGGTAAATGATATTAATGATTTTCTTTTGCATGGAAAT-TGTTTCT
321 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCT-TTTCT
* * * *
938882 TTGCCCTATTTTCCTTAAAATCAAAGTTCAACCCTTAAATAA-AGCAGGCATTGATTCTTGTAAC
385 TTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGA-CAAGCATCGATTCTCGTAAC
* *
938946 AGTATCCATTCGTTTCAAG-TTGGGGA
449 AGTCTCCATTCTTTTCAAGATT-GGGA
* * ** *
938972 ACCAAAAACACATTCCC-TCTATTAGGATACGTGACATTGATGCTTTGGGGTCATAACAAAAGCT
1 ACCAAAAACACATTCCCTTC-ATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCT
* * * * * *
939036 TTTCTTTCCACCATTATTGTTAGAATCGAAGTTTCTCAT-AAATAAGACAAACATGACTACTCAT
65 TTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTC-TCAAATAAGACAACCATGAATACTCAT
* * * * * * * * *
939100 ACTTATTCCTATTCTTTTCTATATTAGGCACCATAAATATAGTCTTCTCATAAGGTTACACGATA
129 ACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATA
* * * * * * * *
939165 TTGAAGCTTTGGTTTTGCAAGAAAGGCTTTCTTCTCTCCAATTTTTGTAAAGTTTAAGTTCGTGC
194 TTGATGCTTTGGTTTCGAAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC
* ** * *
939230 CTCAAATGAGACAAACATGGATTCTAGCAATAATCTTT-ATTCATTTTGCGATTAGGCACTATTA
259 CTCAAATGAGACAAACATGGATTCTAGTAAGGAT-TTTCATTCATTTTGTGATTAGGCACTATAA
* * * *
939294 ACACATTCTCCTTATTAGGATTAATGATATTGATGATTTTCATTTGCATGGAAATCTTTTCTTTG
323 ACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTG
* * ** * *
939359 CCCTATTTTTCATAAAATCAAAGTTCATCCCAAAAATAAGACAAGTATCGATTCTCGTAACAGCC
388 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTC
* *
939424 TTCACTCTTTTCAAGATTGGGA
453 TCCATTCTTTTCAAGATTGGGA
* * * *
939446 ACAAAAAACACATTCCATTCATTAGGATACATGACATTGATGCCTTGGTGTGGCAAGAAAAGCTT
1 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
* * * * * * *
939511 TCCTTTCCACCATTTTTTAATAGAATTAAAGTTTGTTTTTAAATAAGACAACTATCAATACTCAT
66 TTCTTTCCACCA-TTTTTGATAGAATCAAAGTTTG-TCTCAAATAAGACAACCATGAATACTCAT
* * * * * * * *
939576 ACTAATCCCCCATT-TTTT-ATGGATTAAGCACCATAAACATAGCCTCCTCGTAAGGATACTTCA
129 ACTAAT-CCCCATTCTTTTCA-AGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGA
* * * * * *
939639 TATTGATGCTTCGATTTTGAAAGAAAGGCTTTTTACCCACAAATTTTTGTAAAGTCTATGTT--T
192 TATTGATGCTTTGGTTTCGAAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCAT
* *
939702 GCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTT-ATTCATTTTGTGATTAGGAACTTT
257 GCCTCAAATGAGACAAACATGGATTCTAGTAAGGAT-TTTCATTCATTTTGTGATTAGGCACTAT
* * *
939766 AAACACATTCTCCTCATCAGGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTT
321 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTT
* * * * * * ** *
939831 TGCCCTATTTTTCGTAAAATAAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATGTCTG
386 TGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAG
*
939896 TCTCTATTCTTTTCAAGATTGGGA
451 TCTCCATTCTTTTCAAGATTGGGA
** * * * * *
939920 ATGAAAAACACATTCCCTTCATTAGGATACATAATATTGAGGCATTAGTGTCAG-AAGAAAAGCT
1 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTC-GCAAGAAAAGCT
* * * * * *
939984 TTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGACTTTTAATTACGACAATCATGAATACTTA
65 TTTCTTTCCACCATTTTTGATAGAATCAAAGTTTG--TCTCAAATAAGACAACCATGAATACTCA
* * * * *
940049 AAGTAATCCCCATT-TTTCTCAGGATTGGGCACCATAAACATAGTCTTGTCATTAGGATACATGA
128 TACTAATCCCCATTCTTT-TCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGA
* * * * * *
940113 TACTGATACTTTGGTTTCAAAAGAAAGGCTTTTTTTCCACCAATTTTTGTAAAGTCCATGTTCAT
192 TATTGATGCTTTGGTTTCGAAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCAT
* * * * * *
940178 GCCTTAAATGAGACAAACATTGATTCTAGTAAGGATCTTCATTCATTTTGTAATTCGGCACAATA
257 GCCTCAAATGAGACAAACATGGATTCTAGTAAGGATTTTCATTCATTTTGTGATTAGGCACTATA
* * *
940243 AACACATTCTCCTCATTAGGATAAATGATATTTATAATTTTCTTTAGCATGGAAAA-CTTTTCTT
322 AACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAT-GAAAATCTTTTCTT
* * * * *
940307 TGTCCTATTTTCCTTAAAATCAAAGTTCATACTTTAAACAAGACATA-CATCGATTCTCGTAATA
386 TGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACA-AGCATCGATTCTCGTAACA
*
940371 CTCTCCATTCTTTTCAAGATT-GGA
450 GTCTCCATTCTTTTCAAGATTGGGA
* * * * *
940395 ACCAAGAACACACTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTAGTAAGAAAAGGTT
1 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
* * * * * * * * * * * *
940460 TTCTTTCCA-TAGTGTTTAAGAGAATTAAAATTTGTCTGTCAAATAAGAGAAACACGATTCCCCA
66 TTCTTTCCACCA-TTTTTGATAGAATCAAAGTTTGTC--TCAAATAAGACAACCATGAATACTCA
* * * * * *
940524 TACTAATCCCCATTCCTTTT-AGGATTATGCTCCATAAATATAGTCTTCTCTTTAGGATATATGA
128 TACTAATCCCCATT-CTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGA
* * * * * * * *
940588 TATTGATGCTTTGGTTTCGAAA-AAATGCTTGTTTCCCACCCATTCTAGTAAGGATCTTCA-CTC
192 TATTGATGCTTTGGTTTCGAAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAG-TC-TAAGTTC
*** * * * * * ** * * * * * *
940651 GATTTGTGATTAGGCAAAATAAACACTTTCTACTCTTTAGGATAAATGATGTTGA-TGATTTTCT
255 -ATGCCTCA-AATG--AGACAAACA---TGGA-T-TCTA-G-T-AAGGATTTTCATTCATTTTGT
* ** ** **** * ** * * *
940715 --TT-TGCA-TGGAAATC-TTTTCTTTGCC-CTATTTTCCTTAA--A-ATCCAAGTTTATTC-CT
308 GATTAGGCACTATAAA-CACATTC--T-CCTC-ATTAGGATAAATGATATTGATGATT-TTCTTT
** * * * *
940770 TAAAT-AAGGTAAGCATTGATTCTCATAATAGTCTCTATTCGATTCAAGATTAGGAACCAAAAAC
367 TGCATGAA---AATC-TT--TTCT--T--T-G-CCCTATT---TTC---CTT-------AAAATC
* * * * * * * * * *
940834 AAATTTCGT-TCTTAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATATTTTCTTTCC
407 AAAGTTCATCCCTTAA--ATA-A-GACA---A-GCATCGAT-TCTC--G-TAACA--GTC--TCC
* *
940898 A-CCGTTTTTCATAGAATCAATGTTTG-
456 ATTC--TTTTCA-AG-AT---TG--GGA
* * * * * ** * * ** * * *
940924 TCTCTTAAATAAGACA--ACCTTGAATACTCATACTAAT-CCTATT-CTTTTTTAGATTAGGCGT
1 AC-C--AAA-AACACATTCCCTTCATTA-GGATAC--ATGAC-ATTGATGCTTT-G-GT-GTCGC
* * * ** ** *
940985 AATAAACG-TAGTTT-TTTCAAAAGGATACTTGATATTGATACTTTGTTTTTGAAAGAGAGGCTT
55 AAGAAAAGCT--TTTCTTTC--CA--CCA-TT--T-TTGATA----------GAATCA-AAG-TT
* * ** ** * * * * * ** * ***
941048 TTTCCCCCAAATTTTTGTGAAGTCTATGTTCATGCCTCAGATTAGA--CAAATATGAATTTTTTG
98 TGT--CTCAAA--TAAGACAA--CCATG--AAT-ACTCATACTA-ATCCCCAT-T--CTTTTCAA
* * ** * * *
941111 GATTAGGCACCATAAGCATCGTCTTCTCATTAGGATTGATGATATTGATGCTTTAGTTTTGGAAG
150 GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGAAAG
* * * * * * *
941176 AAAGCCTTTCTTCCTACCAATTTTTTTAAAGTCTAAGTTGATACCTCAAATAAGACAAACATGGA
215 AAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGA
* * * * * * ** *
941241 TTCTTGTATGGATCTTT-ATTCATTGTCTAATTAGGCA-TAATAAACAAATTCTTTTCTTTAGGA
280 TTCTAGTAAGGAT-TTTCATTCATTTTGTGATTAGGCACT-ATAAACACATTCTCCTCATTAGGA
* * * * *
941304 TAAATGATGTTGACGATTTTCTTTTGCATTG-AAATCTTTTCTTTGCCTTGTTTTCTTTAAAATC
343 TAAATGATATTGATGATTTTCTTTTGCA-TGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * * * ** * * * *
941368 AAAGTTTATCCTTTATATTAGGTAAGCATCGATTCTCGTGACAGTCTCCATCCATTTCAAGTTTG
407 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTG
941433 GGA
472 GGA
* * * * * *
941436 ACCAAGAGCACATTCCCTTCATTAAGATACATGACATAGATGCTTTGGGGTCGCAACAAAAGCTT
1 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
* * * * * *
941501 TTCTTTCC-CCTATTTTTGATATATTTAAAGTTTGTCTCTCAAATAAGACAAACATCAATAGTCA
66 TTCTTTCCACC-ATTTTTGATAGAATCAAAGTTTG--TCTCAAATAAGACAACCATGAATACTCA
* * * * * *
941565 TTCTAATCTCCATTACTTTT-AGGATTACGCACCATAAACATAGTCTTCTC-TATAGGATAGACG
128 TACTAATCCCCATT-CTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCAT-TAGGATACATG
** ** ** ** *
941628 ATATTTTTGTAAAAT-CTAAGTTCGTGCCTC-AAATGAGGAAAACATTGATTCTT-GTAAAAATC
191 ATA---TTG----ATGCT---TT-G-GTTTCGAAA-GA--AAGGC-TT--TT-TTCCCACCAATT
** ** * * ** * * * ** * *
941690 TTCATTCATTTTGTGATT-A-GGC-AAAAT-A-A-ACACAT-TCTCCTCTTTAGGATAAAGAATA
237 TTTGTAAAGTCTAAG-TTCATGCCTCAAATGAGACAAACATGGAT--TC--TA-G-T-AAGGATT
* * * * * ** **** *
941748 TTGA-TGATTTTCT--TT-TGCA-TAGAAATC-TTTTCTTTGCC-CTATTTTCCTTAA--A-A-T
294 TTCATTCATTTTGTGATTAGGCACTATAAA-CACATTC--T-CCTC-ATTAGGATAAATGATATT
* ** * ** ** * * * *
941802 CAAAATTCATCCCTTAAAT-AAGGCAAGCGTTGATTCTCATAACAGTCTCCATTCTTTTCAAGAT
354 GATGATT-TTCTTTTGCATGAA---AATC-TT--TTCT--T---TG-C-CC--TATTTTC---CT
* * ** * * * *
941866 TAGGAACCAAGAGCGCATTCCCTTCGTTAGGATACATGACATTG-ATCCTTTGGTGTCGTAAGTA
400 TA-AAATCAA-AGTTCA-T-CC--C-TTA-AATA-A-GACA-AGCAT-C---GAT-TC-T-CGTA
* * *
941930 A-AG-CT--TTTC-TTTCAACTGTCTTTGATAGA
447 ACAGTCTCCATTCTTTTCAA--G--ATTG--GGA
* *** * *** * * * ** *
941959 ATCAAAGTTTGACTTTTAAATAAGGCAATCATGAATACTCATG-CTAATCCCCATTCTTTTCAGG
1 ACCAAA--AACAC-ATTCCCT---TC-ATTA-GGATA--CATGAC--AT--TGATGC-TTT--GG
* ** ** * ** * *
942023 AT-TAGGCACCATAAA-CGTAGTC-TT--ATC-TTTAGGATACGTAAT-ATTGATGCTTTGGTTT
49 -TGT-CGCAAGA-AAAGC-TTTTCTTTCCACCATTTTTGATA-G-AATCA---AAG-TTT-GTCT
* * ** ** ** ** * ** * * *
942081 CGAAAGAAAGGCTTTTTTCCCACCAATTTTTGTGAACTCTATCTTCATGC-ATT-AA-ATGA-G-
103 C-AAA-TAAGAC-----AACCATGAATACTCAT--ACT-AATCCCCATTCTTTTCAAGATTAGGC
** * * ** *
942141 A-C--AAACAT-GGATTCT-AGTAGGGAT-C-T--TCATTCAT--TTTGTGATTAGGCACAATAA
158 ACCATAAACATAGTCTTCTCATTA-GGATACATGAT-ATTGATGCTTTG-G-TTTCG-A-AAGAA
** * * * ** *** ** * * * *
942195 ACAC-ATTCTCCTATTAGGATAAATG-ATACTTATAATTTTCTTTG--GC--ATGA-A-AAAC-T
217 AGGCTTTTTTCCCACCA--ATTTTTGTA-AAGTCTAA-GTTC-ATGCCTCAAATGAGACAAACAT
* * **** * *** *** * * * * *
942251 --TTTCT-TTGCCCTATTTTC-TTTAAAATCAAAGTTCA--TACTTTAAATAAGATATGAT--TC
277 GGATTCTAGT-AAGGATTTTCATTCATTTTGTGA-TT-AGGCACTATAAA-CACAT-T-CTCCTC
*** * ** ** * * * * * *
942308 GATTCTCAT-AAT-ACTCTCCATTCTTTTCAAGATTGGAACCAAGAACA-CATTTCATT---C-A
336 -ATTAGGATAAATGA-TATTGATGATTTTC---TTTTG---CATGAAAATCTTTTCTTTGCCCTA
**** * * * * ** * * ** *** * * * *
942366 -TTAGGAT-ACATGACA-TTGATGCTTTGGTACAACAAGAAAAGGTTTTCTT-TC-CACCATTTT
393 TTTTCCTTAAAATCAAAGTTCAT-CCCT--TA-AATAAGACAAGCATCGATTCTCGTAACAGTCT
** **** ** * **
942426 TGATAGAATAAAAGTTTGTCTCTCAAA
454 CCATTCTTTTCAAGATTG------GGA
** * * * * ** * * * * *
942453 TAAGAAAAACATGATTCGCC-ACACTA--ATCCCCATTCCTTTTACGATTAT-G-CTC-CATA-A
1 -ACCAAAAACA-CATTC-CCTTCATTAGGAT--ACATGACATTGATGCTT-TGGTGTCGCA-AGA
* * ** * **
942511 ATATAGTCTTCTCTTTAGGATACATGATATTGATGCTTTGATTTTGAAAGAAAGGCTTT-TCTCC
59 A-A-AG-CTTTTC-TT----TCCA--CCA-T--T--TTTGA--TAGAATCAAA-G-TTTGTCT--
** * *** * * ** *** * *
942575 CACCAATTTTTGTA-AAGTCTAAGTTCGTACCTCA-AATAAGACAAACA-TGGATTCTAG-TAAG
103 CA--AA--TAAG-ACAA--C-CA-TGAATA-CTCATACTAA-TC-CCCATTCTTTTCAAGATTAG
* ** * * * * * * * * * ** *
942636 G-ATC-TTCAC-TCAAT-TTGTGATTAGGAAAAATAAACACTT-ACTCCTCT--TTAGGATA-AA
156 GCACCATAAACAT-AGTCTTCTCATTAGGATACAT-GATA-TTGA-TGCTTTGGTTTCGAAAGAA
* * * ** * **** * * * * * ** ****
942693 TGACGTTGAT--GATTTTTTTTTGCATGAAAATCT--TTTCTTTACCCCAGTTTCCTCAAAATCC
217 AGGCTTTTTTCCCACCAATTTTTG--T-AAAGTCTAAGTTC-ATGCCTCAAATGAGAC-AAA--C
** * * *
942754 AAGTTCATCCCTTAAATAAGGCAAGCATGGATTCTCATAATAGTCTCCATTCTTTTCAAGATT-G
275 -A-TGGAT-TC-T-AGTAA-G---G-AT---TT-TC-----A-T-T-CATT-TTGT---GATTAG
* * * * * * * ** * **
942818 AGAACCAAAAACAGATT-TCGTTC-TTAAGGATATATGATATTGATGCTTTGGTGTCACGA-GAA
314 -GCACTATAAACACATTCTC-CTCATT-AGGATAAATGATATTGATGATTTTCTTTTGC-ATGAA
* *** * * * ** * * *
942880 AATCTTTTCTTT-CCACCATTTTTGATAGAATTAATGTTTGTCTCTTAAATAACACAACCAT-GA
375 AATCTTTTCTTTGCC-CTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCG-
* * * * *** * *
942943 ATACTCAT-ACTAATCCCCATTCTTTTTTGGATTAGGC
438 ATTCTCGTAAC-AGTCTCCATTCTTTTCAAGATTGGGA
* ** * * * * * * * * * * * * *
942980 ACCATAAACTTAGT-CTTCTCATAAGGATACTTAATATTGATACTTCGATTTTGAAAGAAAGGC-
1 ACCAAAAACACATTCCCT-TCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCT
* * *
943043 TTT-TTTCCCCCAAAATTTTGTG-TAG--TC----TATGT-TC----AAG----CC-TCAA-A-T
65 TTTCTTTCCACC---ATTTT-TGATAGAATCAAAGTTTGTCTCAAATAAGACAACCATGAATACT
* * * **** * * **
943088 GAGACAAATAGAGAAT-TTTT--GGATTAGGCA-C-TACAACATCA-TCTTCTCATTAGGATTGA
126 CATACTAATCCCCATTCTTTTCAAGATTAGGCACCATA-AACAT-AGTCTTCTCATTAGGATACA
* * *
943147 TGATATTGATGCATTAGTTTCGGAAGAAA-GCTTTTCTTCCCACCAATTTTTGTAAAGTCTAAGT
189 TGATATTGATGCTTTGGTTTCGAAAGAAAGGCTTTT-TTCCCACCAATTTTTGTAAAGTCTAAGT
* * * * * * * * *
943211 TCATACCTCAAATGAAACAAATATGGATTCTTGTATGGATCTTCATTCATTCTATGTTTAGGCA-
253 TCATGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATTTTCATTCATTTTGTGATTAGGCAC
** * * *
943275 TAATAAACACATTCTTTTCTTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAATTCTTT
318 T-ATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTT
* * * * * * *
943340 TCTTTGCCCTGTTTTCCTTAAAATCAAAGTTCATCCTTTAAATTAGGCAAGCATTGATTCTAGTG
382 TCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTA
* * *
943405 ACAGTGTCCATCCTTTTCAAGTTTGGGA
447 ACAGTCTCCATTCTTTTCAAGATTGGGA
* * * *
943433 ACCAATAACACATTCCCTTCATTAAGATACATGACATAGATGCTTTGGGGTCGCAAGAAAAGCTT
1 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
* * * * * * * *
943498 TTCTTTCC-CC-TGGTTTTGATAAAATTAAAGTTTTTCTCTTAAATAAGGCAAACATCAATAGTT
66 TTCTTTCCACCAT--TTTTGATAGAATCAAAGTTTGTCTC--AAATAAGACAACCATGAATACTC
* * * * * * * * *
943561 ATACTAATCTCCATTATTTTCAGGATTACGCACCATAAACGTACTCTTCTCTTTAGGATAGACGA
127 ATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGA
* * * * * *
943626 TATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCTACCAATTTTTGTAAAGTCTAAGCTCGT
192 TATTGATGCTTTGGTTTCGAAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCAT
* ** * * **
943691 GCCTCAAATAACG-CAAACATGGATTCTAGTAAAAATCTTCACTCATTTTGTGATTAGGCAAAAT
257 GCCTCAAATGA-GACAAACATGGATTCTAGTAAGGATTTTCATTCATTTTGTGATTAGGCACTAT
* * * *
943755 AAACACATTCTTCTCTTTAGGATAAAGGATATTGATGATTTTCTTTCGCATCG-AAATCTTTTCT
321 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAT-GAAAATCTTTTCT
* * * * * *
943819 TTGCCCTATTTTCCTTAAAATCAAAATTTAACCCTTAAATAAGGCAAGCGTTGATTCTCGTAACA
385 TTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACA
*
943884 GTCTCCATTCTTTTCAAGATTAGGA
450 GTCTCCATTCTTTTCAAGATTGGGA
* * * *
943909 ACCAAGAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGTAAAGCTT
1 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
* * * * * * ** *
943974 TTCTTTCAACCGTCTTTGATAGAATCAAAGTTTGACTTTTAAATAAAACAGTCATGAATACTGAT
66 TTCTTTCCACCATTTTTGATAGAATCAAAGTTTG--TCTCAAATAAGACAACCATGAATACTCAT
* * * * * * *
944039 GCTAATCCCCATTCTTTTTAGGATTAGGCACTAGAAACATAGTCTTATCTTTAGGATACATGATA
129 ACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATA
* * *
944104 TTGATGCTTTGGTTTCGAAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAACTCTATGCTCAT-C
194 TTGATGCTTTGGTTTCGAAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC
* * *
944168 TCTCAAATGAGACAAACATGAATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGGCACAATAA
259 -CTCAAATGAGACAAACATGGATTCTAGTAAGGATTTTCATTCATTTTGTGATTAGGCACTATAA
* * *
944233 ACACATTCTCCTCATTATGATAAATGATATTGATAATTTTCTTTAGCATGGAAAA-CTTTTCTTT
323 ACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAT-GAAAATCTTTTCTTT
* * * * * * * * *
944297 GCCCTATTTTCTTTAAAATCAAAGTTCATACTTTAAATAAAACATGCATCGATTCACATAATACT
387 GCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGT
* *
944362 CTCCACTCTTTTCAATATT-GGA
452 CTCCATTCTTTTCAAGATTGGGA
* * *
944384 ACCAAGAACACACTCCCTTCATTAGGATACATGACATTGATGCTTT-G-GT-GC-A-ACAA----
1 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
* * * * * * * *
944440 -TCTTTCCACCGTTTTTGGTAGAATCAAAGTTTGTCTCTCAAATAAAAGAAACTTG-ATTCGCCA
66 TTCTTTCCACCATTTTTGATAGAATCAAAGTTTG--TCTCAAATAAGACAACCATGAATAC-TCA
* * ** * * *
944503 TACTAATCCCCATTCCTTTT-AGGATTATGTTCCATAAATATAGTCGTCTCTTTAGGATACATGA
128 TACTAATCCCCATT-CTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGA
* * * * *
944567 TATTGATGCTTTGGTTTCGAAAAAAATGCTTTTTTCTCACAAATTTTTGTAAAGTCTAAGTTCGT
192 TATTGATGCTTTGGTTTCGAAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCAT
* * * * * * **
944632 GCCTCAAATTAGACAAACATGGGTTCTAGTAAAGG-TCTTCACTCAATTTGTGATTAGACAAAAT
257 GCCTCAAATGAGACAAACATGGATTCTAGT-AAGGATTTTCATTCATTTTGTGATTAGGCACTAT
* * * * *
944696 AAACACTTTCTCCTTC-TTAGGATAAATGATGTTGGTAATTTTCTTTTGCATGGAAATCTTTTCT
321 AAACACATTCTCC-TCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCT
* * * ** * *
944760 TTGCCCTATTTTCCTCATAATCCAAGTTCATCCAC-TAAATAAGGTAAGCATTGATTCTCGTAAT
385 TTGCCCTATTTTCCTTAAAATCAAAGTTCATCC-CTTAAATAAGACAAGCATCGATTCTCGTAAC
* *
944824 AGTCTTCATTCTTTTCATGATTGGGA
449 AGTCTCCATTCTTTTCAAGATTGGGA
* * * * * * * *
944850 ACCAAAAATAGATTCCGTTCATAAGGGTACATGACATTGCTGCTTTGGTGTTGCAAGAAAAACTT
1 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
* * * *
944915 TTCTTTCCA-TAGTTTTTGATAGAATCAATGAATT-T-T-AAATAAGATAACCATGAATAC-CTA
66 TTCTTTCCACCA-TTTTTGATAGAATCAAAG-TTTGTCTCAAATAAGACAACCATGAATACTC-A
* * * * *
944975 CACTAATCCCCATTCTTTTTAAGATTAGGCACCATAAACATAGTTTTCTCATAAGGATACTTGAT
128 TACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGAT
* ** * * * * *
945040 ATTGATACTTCAGTTTTGAAAGAAA--ATTTTTTCCC-CCAAAGTTTTGTGAAGTCTATGTTCAT
193 ATTGATGCTTTGGTTTCGAAAGAAAGGCTTTTTTCCCACC-AATTTTTGTAAAGTCTAAGTTCAT
* * * * **
945102 GCCTCAAATGAGACGAATATGGATTCTAGCAAGAATCCTCATTCATTTTGTGATTAGGCACTATA
257 GCCTCAAATGAGACAAACATGGATTCTAGTAAGGATTTTCATTCATTTTGTGATTAGGCACTATA
* ** * * * *
945167 AACATATTCTTTTCATTCGGATAAATGACATTGATGATTATT-TTTGGCATGAAAATCTTTTATT
322 AACACATTCTCCTCATTAGGATAAATGATATTGATGATT-TTCTTTTGCATGAAAATCTTTTCTT
* * * * **
945231 TGCCCTATTTTCCTCAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAATGG
386 TGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAG
*
945296 TCGCCATTCTTTTCAAGATTGGGA
451 TCTCCATTCTTTTCAAGATTGGGA
* * * ** *
945320 ACTAAAAACACATTTCGTTCATTAGGATACACAACATTGATGCTTTGGTGTCGCAAGAAAAACTT
1 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
* * * * * *
945385 TTCTTTCTAGCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA-GA-GATGTAAGTAGTC
66 TTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTC--AAATAAGACAACCATG-AA-TACTC
* * *** * * *
945448 ATACTAGTCCCCATTATTTTTTGGATTAGGCACTATAAACATCGTCTTCTCATTAGGATAAATGA
127 ATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGA
* * * * * ** *
945513 TATTGATGCTTTAGTTTCGGAAGAAAGCCTTTCTTCCTACCAATTTTTGTAAAGAGTAAATTCAT
192 TATTGATGCTTTGGTTTCGAAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCAT
* * * * *
945578 GCCTCAAATGAGACAAACATGGATTCTTGTATGGATCTTCATTCATTCTATGATTAGGCA-TAAT
257 GCCTCAAATGAGACAAACATGGATTCTAGTAAGGATTTTCATTCATTTTGTGATTAGGCACT-AT
* * * * *
945642 AAACATATTCACTTCTTTAGGATAAATGATATTGATGATTTTCTGTTGCATGAAAATCTTTTCTT
321 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTT
* ** * * * ** * *
945707 TGCCCTGTTTTCCTTAAAATCAAAGTTCATCTTTTCAATTAGGCAAGCATCGAGGCTCATGACAG
386 TGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAG
* *
945772 TCTCCATCCTTTTCAAGCTTGGGA
451 TCTCCATTCTTTTCAAGATTGGGA
* ** * *
945796 ACCAAGAACACATTCCCTTCATTAGGATACATGACATAAAT-CTTTAGG-GTCACAAGAAAAGTT
1 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTT-GGTGTCGCAAGAAAAGCT
* * * * * * * * *
945859 TTTCTTTCCCCCGTTTTTTATAGAATCAATGTTTGTCTCTTAAATAAGGCAAACATCAGTAGTCA
65 TTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTC--AAATAAGACAACCATGAATACTCA
* * * * * *
945924 TACTAATCCCCATTATTTTCAGGATTAAGCACCATAAACATAGTCTTCTCCTTAGGATAGACGAT
128 TACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGAT
* * * * *
945989 ATTGATGCTTTGGTTTC-ACAAGAAAAGCTTTCTTCCTA-CAATTTTTGTAAAGTCTAAGCTCGT
193 ATTGATGCTTTGGTTTCGA-AAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCAT
* ** * * * **
946052 GCCTCAAATGAGGCAAACATGGATTCTAGTAAAAATCTTCCTTCATTTTGTGATTAGGTAAAATA
257 GCCTCAAATGAGACAAACATGGATTCTAGTAAGGATTTTCATTCATTTTGTGATTAGGCACTATA
* *
946117 AACACATTCTCCT-ATTTAGGATAAAGGATATTGATGATTTTCATTTGCAT-AGAAATCTTTTCT
322 AACACATTCTCCTCA-TTAGGATAAATGATATTGATGATTTTCTTTTGCATGA-AAATCTTTTCT
* * ** * * * *
946180 TTGCCCTATTTTCCTTAAAATCAAAATTCATCCATTAAATAAGGTAAGCGTTGATTCTCATGACA
385 TTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACA
*
946245 GTCTCCATTCTTTTCAAGATTAGGA
450 GTCTCCATTCTTTTCAAGATTGGGA
* * * * * *
946270 ACC-AGAACGCATTCCCTTCATTAGGATACATGTCATTGATGCTTTAGTGTCGGAAGTAAAGCTT
1 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
* * * * * * *
946334 TTCTTTCAACCGTCTTTGATAGAATCAAAGTTTGACTTTAAAATAAGACAATCATGAATACTAAT
66 TTCTTTCCACCATTTTTGATAGAATCAAAGTTTG--TCTCAAATAAGACAACCATGAATACTCAT
* * * * * * * * *
946399 GCTAGTCCCCATTCTTTTGAGGATTAGGCACCCTAAACATAGTCTTGTCTTTATGATACATGATG
129 ACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATA
** * * *
946464 TTGATGCTTTGGTTTCGAAAGAAAATCTTTTTTCCCACCAATTTTTGTAAGGTCTATGTTCTTGC
194 TTGATGCTTTGGTTTCGAAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC
** *
946529 CTCAAAAAAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGGCA-TAATAA
259 CTCAAATGAGACAAACATGGATTCTAGTAAGGATTTTCATTCATTTTGTGATTAGGCACT-ATAA
* * * * *
946593 ACACATTCTCCTCATTAGGATAAATGATATTAATAATTTTCTTTAGCATGGAAAA-CCTTTCTTC
323 ACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAT-GAAAATCTTTTCTTT
* * * * * * *
946657 GCCCTATTTTCCTTAAAATCAAAGTTCATACTTTAAATAAGATATGCATCAATTCTCGTAATACT
387 GCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGT
* *
946722 CTCCGTTCTTATCAAGATT-GGA
452 CTCCATTCTTTTCAAGATTGGGA
* * * * * *
946744 ACCAAGATCACATTCCTTTCTTTAGGATACATGAC----AT--TTTGCTG-CAGCAAGAAAAGGT
1 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTC-GCAAGAAAAGCT
** * * * *
946802 TTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGATTCTCAAATAAGAGAAACATG-ATTCGCC
65 TTTCTTTCCACCATTTTTGATAGAATCAAAGTTTG--TCTCAAATAAGACAACCATGAATAC-TC
* ** * * ** * *
946866 ATACTAATCCCCATTCCTTTCCGGATTATGCTCCATAATTATAGTCATCTC-TCTAAGATACATG
127 ATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCAT-TAGGATACATG
* * *
946930 ATACTGATGTTTTGGTTTCGAAAGAAAGGCTTTTTTCCAACCAATTTTTGTAAAGTCTAAGTTCA
191 ATATTGATGCTTTGGTTTCGAAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCA
* * * * * **
946995 TGCCTCAAATGAGACAAATATGGATTCTAGTAAGGATCTTCACTCAATTTGTAATTAGGCAAAAT
256 TGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATTTTCATTCATTTTGTGATTAGGCACTAT
* *
947060 -AA-ACA--CTCCTCCTTAGGATAAATGATGTTGATGATTTTCTTTTGCAT-AGAAATCTTTTCT
321 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGA-AAATCTTTTCT
** * * * * *
947120 TTGCCCTATTTTCCCCAAAACCCATGTTCATCCCTTAAATAAGACAAGCATTGATTCTCGTAATA
385 TTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACA
* * *
947185 GTCTCTATTCTTTTTAAGATTGGAA
450 GTCTCCATTCTTTTCAAGATTGGGA
* *** * * * *
947210 ACCAAAAACAGATTTTGTTCATAAGGATACATTACATTGATGCTTTGGTGTCACAAGAAAAGGTT
1 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
* * * * * * * *
947275 TTCTTTTCATCGTTTTTGATAGAATCAAAGTTTATCTCTTAAGTAAGAGAAACC-TCAATAGTCA
66 TTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTC--AAATAAGA-CAACCATGAATACTCA
* * * **
947339 TGCTAATCCCCATTATTTTCAGGATTAGGCACCATAAACATCA-TCTTCTCATTAGGATGGATGA
128 TACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACAT-AGTCTTCTCATTAGGATACATGA
* * * *
947403 TATTAACGCTTTGGTTTC-ACAAGAAAGCCTTTCTTT-CTACCAATTTTTGTAAAGTCTAAGTTC
192 TATTGATGCTTTGGTTTCGA-AAGAAAGGCTTT-TTTCCCACCAATTTTTGTAAAGTCTAAGTTC
* * * * *
947466 GTGCCTCAAATGAGATAAACATGGATTCTAGTAATGATCTTT-ATTCATTTTGCGATTAGGCATT
255 ATGCCTCAAATGAGACAAACATGGATTCTAGTAAGGAT-TTTCATTCATTTTGTGATTAGGCACT
* * *
947530 ATAAACACATTCTCCTCTTTAGGATAAAAGAT-TTGATGATTTTTCTTTTGCATGGAAATCTTTT
319 ATAAACACATTCTCCTCATTAGGATAAATGATATTGATGA-TTTTCTTTTGCATGAAAATCTTTT
* * * *
947594 CTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGTATTGATTCTCATAA
383 CTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAA
* *
947659 CAGTATCCAATCTTTTCAAGATTGGGA
448 CAGTCTCCATTCTTTTCAAGATTGGGA
** * * * * * * *
947686 ACCAAAAACACATTCTATTCGTAAGGATAGAAGACATTGATGCCTAGGTGTCGCAACAAAAGCTT
1 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
* * * *
947751 TTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAATCGTGAATACTTAT
66 TTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTC--AAATAAGACAACCATGAATACTCAT
* * * * * **
947816 ACCAATCTCCATTCTTTTCAGGATTAAGCACAATAAACATAGTCTTCTCATTAGGATACACAATA
129 ACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATA
* * *** * ** * * *
947881 TTAAAGCTTTGGTTTCGTGGGAAATGCTTTCGTCTCC-CTAATTTTTGTAAAGTCTATGTTCGTG
194 TTGATGCTTTGGTTTCGAAAGAAAGGCTTTTTTC-CCACCAATTTTTGTAAAGTCTAAGTTCATG
* ** * * * * *
947945 CCTCAAATGTGACAAATGTGGAGTCTAGTATGGATCTTCATTCATTTTGTGATTAGTCACAATAA
258 CCTCAAATGAGACAAACATGGATTCTAGTAAGGATTTTCATTCATTTTGTGATTAGGCACTATAA
* * * *
948010 ACACATTCTCATCTTTAGGATAAATGATACTGATGATTTTCTTTTGCATGGAAATCTTTT-TCTT
323 ACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCT-TT
* * * * * * *
948074 GCCCTATTTTCCTTAAAGTCAAAGTTCATCCCCTAAATAA-AGTAAGCATTGATTCTAGTAATAT
387 GCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGA-CAAGCATCGATTCTCGTAACAG
*
948138 TCTCCCTTCTTTTCAAGATT-GGA
451 TCTCCATTCTTTTCAAGATTGGGA
* * *
948161 AGCCAAAAACACATTTCATTCATTAAGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCT
1 A-CCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCT
* * ** * * * *
948226 TTTCTTTCAACCGTCATTGATAGAATCAAA-TTTGTCTTTTATATAAGACAAACATGAATACCCA
65 TTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTC--TCAAATAAGACAACCATGAATACTCA
* * * *
948290 TACCAATCCCCATT-TCTTTCAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGG-TACATGA
128 TACTAATCCCCATTCT-TTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGA
** * * ** * **
948353 TATTGACACATTGGTTTCGCAAGAAAGG-TTTTCTTCCCAATAATTTTTATAAAGTCTAAGTTTG
192 TATTGATGCTTTGGTTTCGAAAGAAAGGCTTTT-TTCCCACCAATTTTTGTAAAGTCTAAGTTCA
* * * *
948417 TGCCTC-AAGGCAGACAAAAATGGA-T-TAGTAATGATCTTCATTCATTTTGTGATTAGGCACTA
256 TGCCTCAAATG-AGACAAACATGGATTCTAGTAAGGATTTTCATTCATTTTGTGATTAGGCACTA
* * * * *
948479 TAAACGCATTCTCCACATTAGAATAAATGATATTGATCATTTTCTTTTGCATGAAAATATTTTCT
320 TAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCT
* * * * ** ** * *
948544 TTGCCCTATTTTCCTTAAAATAAAAATTAATCCCTTAATTGTGACAAGCAAGGATTGTCATAACA
385 TTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACA
* *
948609 ATCTCCATTCTTTTCAAGATTAGGA
450 GTCTCCATTCTTTTCAAGATTGGGA
* * * * ** *
948634 ACCAAGAACACATTCTCTTCTTTATGATACATGACATTGATGCTTTAATGTCGCAAGGAAAGCTT
1 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
** * * * *
948699 TTCTTTGAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGATAAACAAGAATATTCAT
66 TTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTC--AAATAAGACAACCATGAATACTCAT
* * * *
948764 ACTAATCCCTATTGTTTTCAAGATTAGGCGCCATAAACATAGTCTTCTCATAAGGATACATGATA
129 ACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATA
* * * * * * * **
948829 TTGAAGCTTTGGTTTCGCAAGAAAGTCTTTCTTCCCACCATTTTTTGTAAAGTTTAACTTGGTGC
194 TTGATGCTTTGGTTTCGAAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC
* * * * * *
948894 CTCGAATGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTGTGAATAGGTACTATAAA
259 CTCAAATGAGACAAACATGGATTCTAGTAAGGATTTTCATTCATTTTGTGATTAGGCACTATAAA
* * ** * *
948959 CACATTCCCCTTATTACAATAAATGATCTTGATGATTGTCTTTTGCATGAAAATCTTTTCTTTGC
324 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGC
* * * * *
949024 CCTATTTTCCATAAAATCAAAATTCATCACTTAAATATGACAAGCAAT-GATTCTCGCAACAGTC
389 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGC-ATCGATTCTCGTAACAGTC
*
949088 TCCATTCTTTTCAAGATTAGGA
453 TCCATTCTTTTCAAGATTGGGA
* * * * * * * * *
949110 ACCGAGAACAAATTCCTTTCATTAGGATACCTGACATTGAAGCTCTGGTGTTGCAAGTAAAGCTT
1 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
* ** * * * * * * *
949175 TTATTTTAATCGTCTTTGACAGAATCAAAGTTTGCCTCTTATATAAGACAAACATGAATACTCAT
66 TTCTTTCCACCATTTTTGATAGAATCAAAGTTTG--TCTCAAATAAGACAACCATGAATACTCAT
* * * * * *
949240 ACTAATCCCCAATT-TTTTCAGGATTAGGCACCATAAACTTAGTATTCTCATAAGGGTATATGAT
129 ACTAATCCCC-ATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGAT
* * * * * * *
949304 ATTGACGCTTTGGTTTC-ACAAAAAAGGCTCTCTTCCCACCAATTTTTATAAAGTCTATGTTCGT
193 ATTGATGCTTTGGTTTCGA-AAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCAT
* ** * * * * *
949368 GACTCAAGGGAGAGAAACATGGA-T-TAGTAATGATCTTCATTCATTTTGTGATTATGCGCTATA
257 GCCTCAAATGAGACAAACATGGATTCTAGTAAGGATTTTCATTCATTTTGTGATTAGGCACTATA
*
949431 AACACATTCTCCTCATTAGGATAAATGATATTGATGTTTTTCTTTTGCATGGAAATATC-TTT-T
322 AACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAT-GAAA-ATCTTTTCT
* * * * * * * * * *
949494 TTGCCCAATTTTCCTTAAAATAAAAATTCGTCCCTTAAATATGATAAGCAACAATTCTTGTAAAA
385 TTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACA
*
949559 GTCTCCATTCTTTTCAAGATTAGGA
450 GTCTCCATTCTTTTCAAGATTGGGA
* * * * * *
949584 ACCAAGAACACATTTCCTTCTTTAGGATACATGATATTGAAGCTTTGGTGTCGCAAGTAAAGCTT
1 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
** * * * * *
949649 TTCTTTTAACC-GTTTTGATAGAATCAAAGTTTATCTCTCAAATAAGGCAAACATGAATACACAT
66 TTCTTTCCACCATTTTTGATAGAATCAAAG-TT-TGTCTCAAATAAGACAACCATGAATACTCAT
** * * * **
949713 ACTAATCCATATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCGTAACCATACATGATA
129 ACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATA
* * * * * * * *
949778 TTAATGATTTGGTTTTGTAAGAAAGGCTTTTTTCGCACCATTTTTTGTAAAGTGTAAGTTCATAC
194 TTGATGCTTTGGTTTCGAAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC
* * * *
949843 CTCAAACGAGACAAACATGGATTCTAGTAATGATATTCATTCATTTTGTGATCA-GCACTATAAA
259 CTCAAATGAGACAAACATGGATTCTAGTAAGGATTTTCATTCATTTTGTGATTAGGCACTATAAA
949907 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGC
324 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGC
* * * * * * *
949972 CCAATTTT-CTTAAAATCAAACTTCATCCTTTAAATATG-CTGAGCATTGATTCTTGTAACAGTC
389 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGAC-AAGCATCGATTCTCGTAACAGTC
* *
950035 TCCATTCTTTCCAAGATTAGGA
453 TCCATTCTTTTCAAGATTGGGA
* * * *
950057 ATCAAGAACGCATTCCCTTCATTATGATACATGACATTGATGCTTTGGTG-CTGCAAG-AAAGCT
1 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTC-GCAAGAAAAGCT
* * *
950120 TTTCTTTCAACCATTTTTGATAGTATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCA
65 TTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTC--AAATAAGACAACCATGAATACTCA
* ** * * ** *
950185 CACTAATCCTAATT-TTTTCAGGATTAGGCACCATAAACTTAGTCTTCTCAAAAAGATACATGAT
128 TACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGAT
** ** * * * * * **
950249 ATTGACACTTTGGTTTCTCAAGAAAGGCTTTCTTCCTACCAATTTCTGTATAGTTTAAGTTTGTG
193 ATTGATGCTTTGGTTTCGAAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATG
* * * *
950314 CCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGTTTAGGCAATATAA
258 CCTCAAATGAGACAAACATGGATTCTAGTAAGGATTTTCATTCATTTTGTGATTAGGCACTATAA
* * * * * *
950379 A-ACATTCTCCTAATTAGGATAAATGATGTTGATGATATTGTTTTACATGGAAATCTTTTC-TTG
323 ACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTG
* * * * * * * *
950442 CCCTATTTTCCTTAAAGTCAAAGTTACATCCCTCAAATATGCCATGCATTGATTCTTGCAACAGT
388 CCCTATTTTCCTTAAAATCAAAGTT-CATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGT
*
950507 CTTCATTCTTTTCAAGATTGGGA
452 CTCCATTCTTTTCAAGATTGGGA
** * ** * *
950530 ACCAAAAACACATAACCATCATTATAATACATGACATTGCTGCTTTGGTGTCGCAAG-AGAGCTT
1 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
* * * *** *
950594 TTCTTTCAACCATTTTTGATAGTATCAAAGTTTGCCTCTTAAATAAGACATTAATGAATACTCAC
66 TTCTTTCCACCATTTTTGATAGAATCAAAGTTTG--TCTCAAATAAGACAACCATGAATACTCAT
* * * * * * *
950659 ACAAATCCCTATTCTTTTCAGGACTAGGCAGCATAAACTTAGTCTTCTCATAAGGATACATGATA
129 ACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATA
** * * * * *
950724 TTGACACTTTGATTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGC
194 TTGATGCTTTGGTTTCGAAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC
* * ***
950789 CTCAAATGAGACAAACATGGATTCTAGTAAGGGTCTTCATTCATTTTACAATTAGGCACTATAAA
259 CTCAAATGAGACAAACATGGATTCTAGTAAGGATTTTCATTCATTTTGTGATTAGGCACTATAAA
* ** * * * *
950854 GACATTCTCCTTGTTAAGATAAATGATATTGATAATTTTTTTTTTGCAT-ATAAATCTTTCCTTT
324 CACATTCTCCTCATTAGGATAAATGATATTGATGA-TTTTCTTTTGCATGA-AAATCTTTTCTTT
*
950918 GCCCTATTTTCTTTAAAATC-AA-TTC-T--C--------G---A--A---A------T---AGT
387 GCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGT
*
950953 CTCCATTCTTTTCAACATTGGGA
452 CTCCATTCTTTTCAAGATTGGGA
* *
950976 GCCAAAAACACATTCCCTTTATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
1 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
* * * *
951041 TT-TTTCCACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGACTAGC-CA
66 TTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTC--AAATAAGACAACCATGAATA-CTCA
* * * * * * * *
951104 CATTAATCCCTATTCTTTTTAGGATTAGGCACCATAAACATAGTCTACTCA-TAAGATACACGAT
128 TACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGAT
* * ** *
951168 ATTAATGCTTTGGTTTCGTAAGAAAGGCTTTTTTCCCATAAATTTTTGTAAAGTCTAAGTTCGTG
193 ATTGATGCTTTGGTTTCGAAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATG
* * * * * * **
951233 CGTCAAATGAGACAAGCAAGGATTCTAGTAATGATATTCATTCATTTTGTGACTACACACTATAA
258 CCTCAAATGAGACAAACATGGATTCTAGTAAGGATTTTCATTCATTTTGTGATTAGGCACTATAA
* * * * * *
951298 ACAAATTCTCCTCATT-GTGGTAAATGATATTAATGATTTTCTTTTGCATGGAAATCTTTTGTTG
323 ACACATTCTCCTCATTAG-GATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTT
* * * * * *
951362 GCCTTATTTTTCTTAACAATCAAAGTTCATCCATTAAATAAGGCAAGCATTGATTCTCATAACAG
387 GCCCTATTTTCCTTAA-AATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAG
*
951427 TCTCCATTCCTTTCAAGATTAGGG-
451 TCTCCATTCTTTTCAAGATT-GGGA
* * * * * *
951451 GCCAAAAACACATTCCCTTCATTAGGATACATGGCTTTGAAGCTTTGGTGTTGCAAGAAAAGGTT
1 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
* * * *
951516 TTCTTTCAACCGTTTTTGATAGAACCAAAG-TTGTCTCATAACTAAGACAAACATGAATA-T-AT
66 TTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCA-AA-TAAGACAACCATGAATACTCAT
* * ** * * * ** **
951578 ATGCTAAGCCCCATTCTTTTCAGGATTAGGCATAATAAACGTAGTCTTCTCGTAACCATACACAA
129 A--CTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGA
* * * * *
951643 T-TTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCGCACCATTTTTTGTAAAGTATAAGTTCGT
192 TATTGATGCTTTGGTTTCGAAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCAT
* * ** * * *
951707 GCCTCAAACGAGACAAACATGGATTCCAGTAATAATATTCATTCATTTTGGGA-TCGGCACTATA
257 GCCTCAAATGAGACAAACATGGATTCTAGTAAGGATTTTCATTCATTTTGTGATTAGGCACTATA
** * * *
951771 AATGCATTCTCCTCATTAAGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCCTT
322 AACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTT
* * * *
951836 GCCCCATTTT-CTTAAAATCAAAGTTCATCCCTTAAAAAAGACATGCATTGATTCTCGTAACAGT
387 GCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGT
*
951900 CTCCATTCTTTTCAAGATTAGGA
452 CTCCATTCTTTTCAAGATTGGGA
* * *
951923 ATCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTG-CTGCAAGAAAAGGT
1 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTC-GCAAGAAAAGCT
* * * * ** *
951987 TTTCTTTCCACCCTTTTTTATATAATCAAAGTTTGTCCTTAAATAAGACAAATATGGATAGC-CA
65 TTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGT-CTCAAATAAGACAACCATGAATA-CTCA
* * * * * * * * * * **
952051 TACTAATCCCCATTCCTATCAGGATTACGCTCCTTAAATATAGTTTTCTCATTTGGATAGACAAT
128 TACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGAT
* ** * *
952116 ATTGATGCTTTGGTTTTC-AAAGAAAGGCTTTCTTCCCACCTTTTTTTATAAAGTGTAAGTTCAT
193 ATTGATGCTTTGG-TTTCGAAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCAT
* ** * * * *
952180 GCCTCAAAT-AGACAAAAATGGATTCCGGTTAGGA-TCTCATTCATTTTATGATTAGGCACCATA
257 GCCTCAAATGAGACAAACATGGATTCTAGTAAGGATTTTCATTCATTTTGTGATTAGGCACTATA
* * * *
952243 AACA-GTT-TTCTCATAAGGATACATGATATTGA
322 AACACATTCTCCTCATTAGGATAAATGATATTGA
952275 CACTTTGGTT
Statistics
Matches: 12202, Mismatches: 2670, Indels: 1615
0.74 0.16 0.10
Matches are distributed among these distances:
444 38 0.00
445 150 0.01
446 164 0.01
447 12 0.00
448 1 0.00
450 1 0.00
451 2 0.00
452 6 0.00
453 145 0.01
454 17 0.00
455 6 0.00
456 2 0.00
457 4 0.00
458 6 0.00
459 3 0.00
460 1 0.00
461 1 0.00
463 3 0.00
464 10 0.00
465 436 0.04
466 83 0.01
467 4 0.00
468 9 0.00
469 239 0.02
470 318 0.03
471 132 0.01
472 1179 0.10
473 924 0.08
474 2374 0.19
475 1829 0.15
476 2292 0.19
477 331 0.03
478 159 0.01
479 30 0.00
480 15 0.00
481 37 0.00
482 35 0.00
483 23 0.00
484 16 0.00
485 23 0.00
486 18 0.00
487 34 0.00
488 15 0.00
489 14 0.00
490 20 0.00
491 13 0.00
492 29 0.00
493 31 0.00
494 18 0.00
495 26 0.00
496 9 0.00
497 14 0.00
498 22 0.00
499 12 0.00
500 9 0.00
501 9 0.00
502 12 0.00
503 7 0.00
504 7 0.00
505 22 0.00
506 19 0.00
507 11 0.00
508 11 0.00
509 15 0.00
510 8 0.00
511 6 0.00
512 4 0.00
513 12 0.00
514 6 0.00
515 5 0.00
516 4 0.00
517 17 0.00
518 17 0.00
519 9 0.00
520 11 0.00
521 30 0.00
522 14 0.00
523 23 0.00
524 14 0.00
525 17 0.00
526 27 0.00
527 25 0.00
528 16 0.00
529 5 0.00
530 12 0.00
531 28 0.00
532 19 0.00
533 47 0.00
534 32 0.00
535 8 0.00
536 18 0.00
537 13 0.00
538 3 0.00
539 7 0.00
540 8 0.00
541 18 0.00
542 15 0.00
543 12 0.00
544 7 0.00
545 1 0.00
546 1 0.00
547 5 0.00
548 12 0.00
549 4 0.00
550 3 0.00
551 8 0.00
553 9 0.00
554 14 0.00
555 9 0.00
556 17 0.00
557 10 0.00
558 22 0.00
559 2 0.00
560 2 0.00
561 7 0.00
562 4 0.00
563 9 0.00
564 11 0.00
565 57 0.00
566 21 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (474 bp):
ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
TTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCAAATAAGACAACCATGAATACTCATAC
TAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATT
GATGCTTTGGTTTCGAAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCT
CAAATGAGACAAACATGGATTCTAGTAAGGATTTTCATTCATTTTGTGATTAGGCACTATAAACA
CATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCC
TATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCC
ATTCTTTTCAAGATTGGGA
Found at i:937430 original size:474 final size:475
Alignment explanation
Indices: 936123--952274 Score: 10770
Period size: 476 Copynumber: 33.7 Consensus size: 475
936113 AGTCCATGAC
* * * * * * * * *
936123 ACCAAGAACATATTCCTTTCATTAGGGTGCATGACATTGATGTTTTAGTGTCACAAGAAAAACTT
1 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
* * ** * ** * * * * * *
936188 TTATTTTCACTGTTTTTAATAGAATCAAAGTTTACCTCTTAAGTAAGACAACCATTAATAATTAA
66 TTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT-CTCAT
* * * * **
936253 ACAAATCCCCATTTTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCTTTAGGATACATGGCA
130 ACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATA
* *
936318 TTGATGCTTTGGTTTC-ACAAGAAAGGCTTTTTTCCCACCAATTTTCGTAAAGTCTAAGCTCATG
195 TTGATGCTTTGGTTTCGA-AAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATG
* * *
936382 CCTCAAATGAGACAAACATGGATTTTACTAAGGATTTTCATTCATTTTGTGATTGGGCACTATAA
259 CCTCAAATGAGACAAACATGGATTCTAGTAAGGATTTTCATTCATTTTGTGATTAGGCACTATAA
* * * *
936447 ACATATTCTCCTCATTATGATAAATGATATTGATGATTTTCTTTTGCATGGAAATATTTTCTTTG
324 ACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTG
* * * * *
936512 CCCTATTTTCCTAAAAATCAAATTTCATCCCTTAAATATA-ACAAGAATTGATTGC-CGTAATAG
389 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATA-AGACAAGCATCGATT-CTCGTAACAG
* *
936575 TCTTCATTCTTTTCAAAATT-GGA
452 TCTCCATTCTTTTCAAGATTGGGA
* * * * * * *
936598 ATCAAGAACCCATTCACTTCATTAGGGTGCATGACATTGATGCTTTGGTGTCGCAAGAAAAACTT
1 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
* * * * *
936663 TTATTTCCACTATTTTTGATAGAATCAAAGTTTACGTCTC--AAATAAGACGACCATGAAGACTC
66 TTCTTTCCACCATTTTTGATAGAATCAAAGTTT--GTCTCTTAAATAAGACAAACATGAA-TCTC
* * * *
936726 AAACTAATTCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCTTTAGGATACATGA
128 ATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGA
* * * * *
936791 TATTGATGCTTTGCTTTCGAAAGAACGGCTTTTTTCCTACCAATTTTTGTAATGTCTAACTTCAT
193 TATTGATGCTTTGGTTTCGAAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCAT
* * * * *
936856 GCCTCAAATGAGACAAACATAGATTCTAGTAAGGATTTTCATTTATTTTATGATTAGGCACAAAA
258 GCCTCAAATGAGACAAACATGGATTCTAGTAAGGATTTTCATTCATTTTGTGATTAGGCACTATA
* * * * **
936921 AACACAATCTCCTCATTAGGATAAATGATATTGATGATTCTCTTTTGTATGAAAATCTTCTCCAT
323 AACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTT
*** * * *
936986 GTTGTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACGAGCATCAATTCTCGTAACAAT
388 GCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGT
** *
937051 -TATATTCTATTCCAA-ATTGGGA
453 CTCCATTCT-TTTCAAGATTGGGA
* * * * *
937073 ACCAAAAATACATTCCCTTCATTATGATACATGACATT-ATTGGTTTGGTGTCGCAAGAAATGTT
1 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGA-TGCTTTGGTGTCGCAAGAAAAGCT
* * * * * *
937137 TTTCTTTCTAGCATTTTTTATAGAATCCAAGTTTGTCTCTTAAATAACATAAACATGAATCGTCA
65 TTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATC-TCA
* * ** *
937202 TACTAATCCCCATTATTTTCAGTATTACACACCATAAACATAGTCTT-TTATTAGGATACATGAT
129 TACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGAT
* * * * * *
937266 ATTGATGCTTTGATTTGGCAAGTAAGGATTTTTTCCCACCAATTTTTGCAAAGTCTAAGTTCATG
194 ATTGATGCTTTGGTTTCGAAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATG
* * *
937331 CCTCAAATGAGACAAAGATGGATTCTAGTAAGGATTTTCATTCATTTTGTGATTAAGCACAATAA
259 CCTCAAATGAGACAAACATGGATTCTAGTAAGGATTTTCATTCATTTTGTGATTAGGCACTATAA
* * * * *
937396 ACACCTTCTCCTCATCAGGATAAATGACATTGATGATTTTCTTTTGCAT-AGAAGTATTTTCTTT
324 ACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGA-AAATCTTTTCTTT
* * * * *
937460 GCCCTATTTCCCATAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTATCGTAACAGT
388 GCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGT
* * *
937525 CTCCATCCTATTCATGATTGGGA
453 CTCCATTCTTTTCAAGATTGGGA
* * * * * *
937548 ACCAAAAACATATTCCCTACATTAGGACACCTGACATTGATGC-TTGGCGTCACAAGAAAAGCTT
1 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
* ** * * * *
937612 TTCTTTCAACTGTTTTTGATAGAATCAAAGTTTATCTCCTCAATAAGACAAACATGAATAGTCAT
66 TTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT-CTCAT
** * * * *
937677 ACTAATTTCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCACATAAAGATACATGATA
130 ACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATA
* * ** * * * * **
937742 TTGGTGCTTTGGTTTTGCTAG-AAGGCTTCGTTT-CCACCAATTTTTGTGAACTCTAAATTTGTG
195 TTGATGCTTTGGTTTCGAAAGAAAGGCTT-TTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATG
* * * * * * *
937805 CCCCAAATGAGACAAACATGGATTCTATTAATGATCTTCTTTCATTTTGAGATTAAGCACTATAA
259 CCTCAAATGAGACAAACATGGATTCTAGTAAGGATTTTCATTCATTTTGTGATTAGGCACTATAA
* * * * *
937870 ACACATTCTCCTCTTTAGGACAAATGCTATTGATGATTTTCTTTTGCATG-GAATCTTTTC-TTA
324 ACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTG
* * * * ** *
937933 CCCTATTTTCCTTAAAATCAAAATTAATCCC-TAAATATGGCAAGCATCGATTCTAATAATAGTC
389 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTC
* *
937997 CCCACTCTTTTCAAGATTGGGA
454 TCCATTCTTTTCAAGATTGGGA
* * * ** *
938019 ACCAAGAACACATCCCCTTTATTAGGATACATGACATTGATGCTTTGGCAATAG-AAGAAAAGCT
1 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGG-TGTCGCAAGAAAAGCT
* * *
938083 TTTATTTCCACCATTTTTGATAGAATCAAAGTTTGTCT-TGTAAATAAGGCAACCATGAATACTC
65 TTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCT-TAAATAAGACAAACATGAAT-CTC
* * * *** * * *
938147 ATACTAATCCCCTTTCTTTTCAGGATTAGGCACCGTTATTGTAGTCTTCTCCTAAGGATACAAGA
128 ATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGA
* * * *
938212 TATTGATGCTTTAGTTTTGAAAGCAAGGCTTTTTTCCC-CCTAATTTTTGTAAAGTCTATGTTCA
193 TATTGATGCTTTGGTTTCGAAAGAAAGGCTTTTTTCCCACC-AATTTTTGTAAAGTCTAAGTTCA
* * * * * *
938276 TGACTGAAATGAGACAAACATGGATTCTAGTAATGATCTTAATTCATTCTGTGATTAGGCACTAT
257 TGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATTTTCATTCATTTTGTGATTAGGCACTAT
* * * * * * *
938341 AAACATATTCTTCTCGTTAGGATAAATGATGTTAAAGATTTTCTTTTGCATGAAAATCTTTTTTT
322 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATC--TTTTC
* * * * **
938406 TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCTCTTAAATAAGGCAAGCCTAGATTCTTATAAC
385 TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAAC
*
938471 AGTCTCCATTCTTTTCAAGAGTGGGA
450 AGTCTCCATTCTTTTCAAGATTGGGA
* * * * *
938497 ACC-AAAACTACATTTCGTTCATTAGGATACATGACACTGATGCTTTAGTGTTGCAAGAAAAGCT
1 ACCAAAAAC-ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCT
* * * *
938561 TTTCTTTCCACCGTTATTGATAGAATGC-AAGTTTGTCTCATAAATAAGACAACCATGAATCTCA
65 TTTCTTTCCACCATTTTTGATAGAAT-CAAAGTTTGTCTCTTAAATAAGACAAACATGAATCTCA
* * * * * * *
938625 TACTAATCCGCATTCTTTTCAGGATTGGGCACCATAAACATAGTTTTCCCATTAGGGTATAGGAT
129 TACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGAT
* * * *
938690 ATTTATGCTTTGGTTTCAAAAGAAAGGCTTTTTTCCCACTAATTTTTGTAAAGTCTAAGTTCACG
194 ATTGATGCTTTGGTTTCGAAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATG
* * *
938755 CCTCAAATGAAACAAACATGGATTCTAGTAAGGATCTTCATTCATTTTATGATTAGGCA-TAATA
259 CCTCAAATGAGACAAACATGGATTCTAGTAAGGATTTTCATTCATTTTGTGATTAGGCACT-ATA
* * * * *
938819 AACATATTCTCCTCTTTAGGGTAAATGATATTAATGATTTTCTTTTGCATGGAAAT-TGTTTCTT
323 AACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCT-TTTCTT
* * * *
938883 TGCCCTATTTTCCTTAAAATCAAAGTTCAACCCTTAAATAA-AGCAGGCATTGATTCTTGTAACA
387 TGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGA-CAAGCATCGATTCTCGTAACA
* *
938947 GTATCCATTCGTTTCAAG-TTGGGGA
451 GTCTCCATTCTTTTCAAGATT-GGGA
* * ** *
938972 ACCAAAAACACATTCCC-TCTATTAGGATACGTGACATTGATGCTTTGGGGTCATAACAAAAGCT
1 ACCAAAAACACATTCCCTTC-ATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCT
* * * * *
939036 TTTCTTTCCACCATTATTGTTAGAATCGAAG-TT-TCTCATAAATAAGACAAACATGACTACTCA
65 TTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT-CTCA
* * * * * * * *
939099 TACTTATTCCTATTCTTTTCTA-TATTAGGCACCATAAATATAGTCTTCTCATAAGGTTACACGA
129 TACTAATCCCCATTCTTTTC-AGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGA
* * * * * * * *
939163 TATTGAAGCTTTGGTTTTGCAAGAAAGGCTTTCTTCTCTCCAATTTTTGTAAAGTTTAAGTTCGT
193 TATTGATGCTTTGGTTTCGAAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCAT
* ** *
939228 GCCTCAAATGAGACAAACATGGATTCTAGCAATAATCTTT-ATTCATTTTGCGATTAGGCACTAT
258 GCCTCAAATGAGACAAACATGGATTCTAGTAAGGAT-TTTCATTCATTTTGTGATTAGGCACTAT
* * * * *
939292 TAACACATTCTCCTTATTAGGATTAATGATATTGATGATTTTCATTTGCATGGAAATCTTTTCTT
322 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTT
* * ** *
939357 TGCCCTATTTTTCATAAAATCAAAGTTCATCCCAAAAATAAGACAAGTATCGATTCTCGTAACAG
387 TGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAG
* * *
939422 CCTTCACTCTTTTCAAGATTGGGA
452 TCTCCATTCTTTTCAAGATTGGGA
* * * *
939446 ACAAAAAACACATTCCATTCATTAGGATACATGACATTGATGCCTTGGTGTGGCAAGAAAAGCTT
1 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
* * * * *
939511 TCCTTTCCACCATTTTTTAATAGAATTAAAGTTTGT-TTTTAAATAAGAC-AACTATCAATACTC
66 TTCTTTCCACCA-TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC-ATGAAT-CTC
* * * * * *
939574 ATACTAATCCCCCATT-TTTT-ATGGATTAAGCACCATAAACATAGCCTCCTCGTAAGGATACTT
128 ATACTAAT-CCCCATTCTTTTCA-GGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACAT
* * * * * * *
939637 CATATTGATGCTTCGATTTTGAAAGAAAGGCTTTTTACCCACAAATTTTTGTAAAGTCTATGTT-
191 GATATTGATGCTTTGGTTTCGAAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTC
*
939701 -TGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTT-ATTCATTTTGTGATTAGGAACT
256 ATGCCTCAAATGAGACAAACATGGATTCTAGTAAGGAT-TTTCATTCATTTTGTGATTAGGCACT
* * * *
939764 TTAAACACATTCTCCTCATCAGGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTC
320 ATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTC
* * * * * * **
939829 TTTGCCCTATTTTTCGTAAAATAAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATGTC
385 TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAAC
* *
939894 TGTCTCTATTCTTTTCAAGATTGGGA
450 AGTCTCCATTCTTTTCAAGATTGGGA
** * * * * *
939920 ATGAAAAACACATTCCCTTCATTAGGATACATAATATTGAGGCATTAGTGTCAG-AAGAAAAGCT
1 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTC-GCAAGAAAAGCT
* * * * * *
939984 TTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGACTTTTAATTACGACAATCATGAATACTTA
65 TTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT-CTCA
* * * *
940049 AAGTAATCCCCATT-TTTCTCAGGATTGGGCACCATAAACATAGTCTTGTCATTAGGATACATGA
129 TACTAATCCCCATTCTTT-TCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGA
* * * * * *
940113 TACTGATACTTTGGTTTCAAAAGAAAGGCTTTTTTTCCACCAATTTTTGTAAAGTCCATGTTCAT
193 TATTGATGCTTTGGTTTCGAAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCAT
* * * * * *
940178 GCCTTAAATGAGACAAACATTGATTCTAGTAAGGATCTTCATTCATTTTGTAATTCGGCACAATA
258 GCCTCAAATGAGACAAACATGGATTCTAGTAAGGATTTTCATTCATTTTGTGATTAGGCACTATA
* * *
940243 AACACATTCTCCTCATTAGGATAAATGATATTTATAATTTTCTTTAGCATGGAAAA-CTTTTCTT
323 AACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAT-GAAAATCTTTTCTT
* * * * *
940307 TGTCCTATTTTCCTTAAAATCAAAGTTCATACTTTAAACAAGACATA-CATCGATTCTCGTAATA
387 TGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACA-AGCATCGATTCTCGTAACA
*
940371 CTCTCCATTCTTTTCAAGATT-GGA
451 GTCTCCATTCTTTTCAAGATTGGGA
* * * * *
940395 ACCAAGAACACACTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTAGTAAGAAAAGGTT
1 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
* * * * * * * * * * * *
940460 TTCTTTCCA-TAGTGTTTAAGAGAATTAAAATTTGTCTGTCAAATAAGAGAAACACGATTCCCCA
66 TTCTTTCCACCA-TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT-CTCA
* * * * *
940524 TACTAATCCCCATTCCTTTT-AGGATTATGCTCCATAAATATAGTCTTCTCTTTAGGATATATGA
129 TACTAATCCCCATT-CTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGA
* * * * * * * *
940588 TATTGATGCTTTGGTTTCGAAA-AAATGCTTGTTTCCCACCCATTCTAGTAAGGATCTTCA-CTC
193 TATTGATGCTTTGGTTTCGAAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAG-TC-TAAGTTC
*** * * * * * ** * * * * * *
940651 GATTTGTGATTAGGCAAAATAAACACTTTCTACTCTTTAGGATAAATGATGTTGA-TGATTTTCT
256 -ATGCCTCA-AATG--AGACAAACA---TGGA-T-TCTA-G-T-AAGGATTTTCATTCATTTTGT
* ** ** **** * ** * * *
940715 --TT-TGCA-TGGAAATC-TTTTCTTTGCC-CTATTTTCCTTAA--A-ATCCAAGTTTATTC-CT
309 GATTAGGCACTATAAA-CACATTC--T-CCTC-ATTAGGATAAATGATATTGATGATT-TTCTTT
** * * * *
940770 TAAAT-AAGGTAAGCATTGATTCTCATAATAGTCTCTATTCGATTCAAGATTAGGAACCAAAAAC
368 TGCATGAA---AATC-TT--TTCT--T--T-G-CCCTATT---TTC---CTT-------AAAATC
* * * * * * * * * *
940834 AAATTTCGT-TCTTAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATATTTTCTTTCC
408 AAAGTTCATCCCTTAA--ATA-A-GACA---A-GCATCGAT-TCTC--G-TAACA--GTC--TCC
* *
940898 A-CCGTTTTTCATAGAATCAATGTTTG-
457 ATTC--TTTTCA-AG-AT---TG--GGA
* * * * * ** * * ** * * *
940924 TCTCTTAAATAAGACA--ACCTTGAATACTCATACTAAT-CCTATT-CTTTTTTAGATTAGGCGT
1 AC-C--AAA-AACACATTCCCTTCATTA-GGATAC--ATGAC-ATTGATGCTTT-G-GT-GTCGC
* * * ** ** * * * * * *
940985 AATAAACG-TAGTTT-TTTCAAAAGGATACTTGAT--ATTGATACTTTGT-TTTTGAAAGAGAGG
55 AAGAAAAGCT--TTTCTTTC--CACCATTTTTGATAGAATCAAAGTTTGTCTCTT-AAATA-A-G
* ** * * ** * **
941045 CTTTTTCCCCCAAATTTTTGTGAAGTCTATGTTCATGCCTCAGATTAGACAAATATGAATTTTTT
113 ---------ACAAA----CATGAA-TC-----TCAT-ACT-A-A-T--CCCCAT-T--CTTTTCA
* * ** * * *
941110 GGATTAGGCACCATAAGCATCGTCTTCTCATTAGGATTGATGATATTGATGCTTTAGTTTTGGAA
150 GGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGAAA
* * * * * * *
941175 GAAAGCCTTTCTTCCTACCAATTTTTTTAAAGTCTAAGTTGATACCTCAAATAAGACAAACATGG
215 GAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGG
* * * * * * ** *
941240 ATTCTTGTATGGATCTTT-ATTCATTGTCTAATTAGGCA-TAATAAACAAATTCTTTTCTTTAGG
280 ATTCTAGTAAGGAT-TTTCATTCATTTTGTGATTAGGCACT-ATAAACACATTCTCCTCATTAGG
* * * * *
941303 ATAAATGATGTTGACGATTTTCTTTTGCATTG-AAATCTTTTCTTTGCCTTGTTTTCTTTAAAAT
343 ATAAATGATATTGATGATTTTCTTTTGCA-TGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
* * * * ** * * * *
941367 CAAAGTTTATCCTTTATATTAGGTAAGCATCGATTCTCGTGACAGTCTCCATCCATTTCAAGTTT
407 CAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATT
941432 GGGA
472 GGGA
* * * * * *
941436 ACCAAGAGCACATTCCCTTCATTAAGATACATGACATAGATGCTTTGGGGTCGCAACAAAAGCTT
1 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
* * * * * *
941501 TTCTTTCC-CCTATTTTTGATATATTTAAAGTTTGTCTCTCAAATAAGACAAACATCAATAGTCA
66 TTCTTTCCACC-ATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT-CTCA
* * * * *
941565 TTCTAATCTCCATTACTTTT-AGGATTACGCACCATAAACATAGTCTTCTC-TATAGGATAGACG
129 TACTAATCCCCATT-CTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAT-TAGGATACATG
** ** ** ** *
941628 ATATTTTTGTAAAAT-CTAAGTTCGTGCCTC-AAATGAGGAAAACATTGATTCTT-GTAAAAATC
192 ATA---TTG----ATGCT---TT-G-GTTTCGAAA-GA--AAGGC-TT--TT-TTCCCACCAATT
** ** * * ** * * * ** * *
941690 TTCATTCATTTTGTGATT-A-GGC-AAAAT-A-A-ACACAT-TCTCCTCTTTAGGATAAAGAATA
238 TTTGTAAAGTCTAAG-TTCATGCCTCAAATGAGACAAACATGGAT--TC--TA-G-T-AAGGATT
* * * * * ** **** *
941748 TTGA-TGATTTTCT--TT-TGCA-TAGAAATC-TTTTCTTTGCC-CTATTTTCCTTAA--A-A-T
295 TTCATTCATTTTGTGATTAGGCACTATAAA-CACATTC--T-CCTC-ATTAGGATAAATGATATT
* ** * ** ** * * * *
941802 CAAAATTCATCCCTTAAAT-AAGGCAAGCGTTGATTCTCATAACAGTCTCCATTCTTTTCAAGAT
355 GATGATT-TTCTTTTGCATGAA---AATC-TT--TTCT--T---TG-C-CC--TATTTTC---CT
* * ** * * * *
941866 TAGGAACCAAGAGCGCATTCCCTTCGTTAGGATACATGACATTG-ATCCTTTGGTGTCGTAAGTA
401 TA-AAATCAA-AGTTCA-T-CC--C-TTA-AATA-A-GACA-AGCAT-C---GAT-TC-T-CGTA
* * *
941930 A-AG-CT--TTTC-TTTCAACTGTCTTTGATAGA
448 ACAGTCTCCATTCTTTTCAA--G--ATTG--GGA
* *** * *** * * * ** *
941959 ATCAAAGTTTGACTTTTAAATAAGGCAATCATGAATACTCATG-CTAATCCCCATTCTTTTCAGG
1 ACCAAA--AACAC-ATTCCCT---TC-ATTA-GGATA--CATGAC--AT--TGATGC-TTT--GG
* ** ** * ** * *
942023 AT-TAGGCACCATAAA-CGTAGTC-TT--ATC-TTTAGGATACGTAAT-ATTGATGCTTTG-GT-
49 -TGT-CGCAAGA-AAAGC-TTTTCTTTCCACCATTTTTGATA-G-AATCA---AAG-TTTGTCTC
** * * *** * * * ** **** * * *
942079 TTCGA-AAGA-AAGGCTTTTTTCCCACCAATTTTTGTGAACTCTATCTTCATGCATTAAATG-A-
104 TTAAATAAGACAA-ACATGAATCTCA--TACTAATCCCCATTCT-T-TTCA-GGATT--AGGCAC
* * ** * * ** * *
942140 GACAAACAT-GGATTCT-AGTAGGGAT-C-T--TCATTCAT--TTTGTGATTAGGCACAATAAAC
161 CATAAACATAGTCTTCTCATTA-GGATACATGAT-ATTGATGCTTTG-G-TTTCG-A-AAGAAAG
* * * * ** *** ** * * * * * *** *
942197 AC-ATTCTCCTATTAGGATAAATG-ATACTTATAATTTTCTTTGGCATGAAA--A-ACTTTTCTT
220 GCTTTTTTCCCACCA--ATTTTTGTA-AAGTCTAA-GTTC-AT-GCCTCAAATGAGAC-AAAC-A
* * * * * * ***
942257 TGCCCTATTTTCT-TTAA-AATCAAAGTTCATAC-TTTAAATAAGATATGATTCGATTCTCATAA
277 TG---GA--TTCTAGTAAGGAT----TTTCATTCATTT---T--G---TGATTAGGCACT-ATAA
* ** * ** * * **** *
942319 TACTCTCCATTCTTTTCAAGATT-GGAACCAAGAACACATT--TCATTCATTAGGATACATGACA
324 -A--C-ACATTCTCCTC---ATTAGG-A-TAA-ATGATATTGATGATT--TTCTTTTGCATGA-A
* * * *** * * **
942381 TTGATGCTTTGGTACAACAAGAAAAGGTTTTCTTTCCACCATTTTTGATAGAATAAAAGTTTGTC
376 --AAT-CTTT--T----C------------T-TTGCC-CTATTTTCCTTAAAATCAAAGTTCATC
* * * * * * * * * ** *
942446 TCTCAAATAAGAAAAACAT-GATTCGC-CACACTAATCCCCATTCCTTTT-ACGATTATGC
418 CCTTAAATAAGACAAGCATCGATTCTCGTA-AC-AGTCTCCATT-CTTTTCAAGATTGGGA
* * * * * * * * * * * * *
942504 TCCATAAATATAGT-CTTCTCTTTAGGATACATGATATTGATGCTTTGATTTTGAAAGAAAGGCT
1 ACCAAAAACACATTCCCT-TCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCT
* * * * *
942568 TTTC-TCCCACCAATTTTTG-TA-AAGTCTAAGTTCGTAC-CTCAAATAAGACAAACATGGAT-T
65 TTTCTTTCCACC-ATTTTTGATAGAA-TCAAAGTTTGT-CTCTTAAATAAGACAAACATGAATCT
* ** * * * ** * *
942628 C-TAGTAAGGATCTTCACTCAATTT--GTGATTAGGAAAAATAAACACT--TACTCCTCTTTAGG
127 CATACT-A--ATCCCCATTC-TTTTCAG-GATTAGGCACCATAAACA-TAGT-CTTCTCATTAGG
* ** * ** * * * ** * * * * *
942688 ATAAATGACGTTGATGATTTTTTTTTGCATGAAAATCTTTTCTTTACC-CCAGTTTCCT-CAAAA
185 ATACATGATATTGATGCTTTGGTTTCGAAAGAAAGGC-TTT-TTTCCCACCAATTT-TTGTAAAG
* * * * * * * * * **
942751 TCCAAGTTCATCCCTTAAATAAGGCAAGCATGGATTCTCA-TAA-TAGTCTCCATTC-TTTTCAA
247 TCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCT-AGTAAGGA-TTTTCATTCATTTT-GT
* * * * * * * ** * **
942813 GATT-GAGAACCAAAAACAGATT-TCGTTC-TTAAGGATATATGATATTGATGCTTTGGTGTCAC
309 GATTAG-GCACTATAAACACATTCTC-CTCATT-AGGATAAATGATATTGATGATTTTCTTTTGC
* *** * * * ** * * *
942875 GA-GAAAATCTTTTCTTT-CCACCATTTTTGATAGAATTAATGTTTGTCTCTTAAATAACACAAC
371 -ATGAAAATCTTTTCTTTGCC-CTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAG
* * * * *** * *
942938 CAT-GAATACTCAT-ACTAATCCCCATTCTTTTTTGGATTAGGC
434 CATCG-ATTCTCGTAAC-AGTCTCCATTCTTTTCAAGATTGGGA
* ** * * * * * * * * * * * * *
942980 ACCATAAACTTAGT-CTTCTCATAAGGATACTTAATATTGATACTTCGATTTTGAAAGAAAGGC-
1 ACCAAAAACACATTCCCT-TCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCT
* * * * * *
943043 TTT-TTTCCCCCAAAATTTTGTG-TAG--TCTATGTTCAAG-C-CTCAAAT--G--AGACA--AA
65 TTTCTTTCCACC---ATTTT-TGATAGAATCAAAGTT--TGTCTCTTAAATAAGACAAACATGAA
* *
943096 --T-AGA--GA-----A-T-TTTT--GGATTAGGCA-C-TACAACATCA-TCTTCTCATTAGGAT
124 TCTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATA-AACAT-AGTCTTCTCATTAGGAT
** * * *
943144 TGATGATATTGATGCATTAGTTTCGGAAGAAA-GCTTTTCTTCCCACCAATTTTTGTAAAGTCTA
187 ACATGATATTGATGCTTTGGTTTCGAAAGAAAGGCTTTT-TTCCCACCAATTTTTGTAAAGTCTA
* * * * * * * * *
943208 AGTTCATACCTCAAATGAAACAAATATGGATTCTTGTATGGATCTTCATTCATTCTATGTTTAGG
251 AGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATTTTCATTCATTTTGTGATTAGG
** * * *
943273 CA-TAATAAACACATTCTTTTCTTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAATTC
316 CACT-ATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATC
* * * * * *
943337 TTTTCTTTGCCCTGTTTTCCTTAAAATCAAAGTTCATCCTTTAAATTAGGCAAGCATTGATTCTA
380 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC
* * * *
943402 GTGACAGTGTCCATCCTTTTCAAGTTTGGGA
445 GTAACAGTCTCCATTCTTTTCAAGATTGGGA
* * * *
943433 ACCAATAACACATTCCCTTCATTAAGATACATGACATAGATGCTTTGGGGTCGCAAGAAAAGCTT
1 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
* * * * * * *
943498 TTCTTTCC-CC-TGGTTTTGATAAAATTAAAGTTTTTCTCTTAAATAAGGCAAACATCAATAGTT
66 TTCTTTCCACCAT--TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT-CTC
* * * * * * * *
943561 ATACTAATCTCCATTATTTTCAGGATTACGCACCATAAACGTACTCTTCTCTTTAGGATAGACGA
128 ATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGA
* * * * * *
943626 TATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCTACCAATTTTTGTAAAGTCTAAGCTCGT
193 TATTGATGCTTTGGTTTCGAAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCAT
* ** * * **
943691 GCCTCAAATAACG-CAAACATGGATTCTAGTAAAAATCTTCACTCATTTTGTGATTAGGCAAAAT
258 GCCTCAAATGA-GACAAACATGGATTCTAGTAAGGATTTTCATTCATTTTGTGATTAGGCACTAT
* * * *
943755 AAACACATTCTTCTCTTTAGGATAAAGGATATTGATGATTTTCTTTCGCATCG-AAATCTTTTCT
322 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAT-GAAAATCTTTTCT
* * * * * *
943819 TTGCCCTATTTTCCTTAAAATCAAAATTTAACCCTTAAATAAGGCAAGCGTTGATTCTCGTAACA
386 TTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACA
*
943884 GTCTCCATTCTTTTCAAGATTAGGA
451 GTCTCCATTCTTTTCAAGATTGGGA
* * * *
943909 ACCAAGAACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGTAAAGCTT
1 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
* * * * * * ** *
943974 TTCTTTCAACCGTCTTTGATAGAATCAAAGTTTGACTTTTAAATAAAACAGTCATGAATACTGAT
66 TTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT-CTCAT
* * * * * *
944039 GCTAATCCCCATTCTTTTTAGGATTAGGCACTAGAAACATAGTCTTATCTTTAGGATACATGATA
130 ACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATA
* * *
944104 TTGATGCTTTGGTTTCGAAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAACTCTATGCTCAT-C
195 TTGATGCTTTGGTTTCGAAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC
* * *
944168 TCTCAAATGAGACAAACATGAATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGGCACAATAA
260 -CTCAAATGAGACAAACATGGATTCTAGTAAGGATTTTCATTCATTTTGTGATTAGGCACTATAA
* * *
944233 ACACATTCTCCTCATTATGATAAATGATATTGATAATTTTCTTTAGCATGGAAAA-CTTTTCTTT
324 ACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAT-GAAAATCTTTTCTTT
* * * * * * * * *
944297 GCCCTATTTTCTTTAAAATCAAAGTTCATACTTTAAATAAAACATGCATCGATTCACATAATACT
388 GCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGT
* *
944362 CTCCACTCTTTTCAATATT-GGA
453 CTCCATTCTTTTCAAGATTGGGA
* * *
944384 ACCAAGAACACACTCCCTTCATTAGGATACATGACATTGATGCTTT-G-GT-GC-A-ACAA----
1 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
* * * * * * * *
944440 -TCTTTCCACCGTTTTTGGTAGAATCAAAGTTTGTCTCTCAAATAAAAGAAACTTGATTCGCCAT
66 TTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATC-TCAT
* ** * * *
944504 ACTAATCCCCATTCCTTTT-AGGATTATGTTCCATAAATATAGTCGTCTCTTTAGGATACATGAT
130 ACTAATCCCCATT-CTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGAT
* * * * *
944568 ATTGATGCTTTGGTTTCGAAAAAAATGCTTTTTTCTCACAAATTTTTGTAAAGTCTAAGTTCGTG
194 ATTGATGCTTTGGTTTCGAAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATG
* * * * * * **
944633 CCTCAAATTAGACAAACATGGGTTCTAGTAAAGG-TCTTCACTCAATTTGTGATTAGACAAAATA
259 CCTCAAATGAGACAAACATGGATTCTAGT-AAGGATTTTCATTCATTTTGTGATTAGGCACTATA
* * * * *
944697 AACACTTTCTCCTTC-TTAGGATAAATGATGTTGGTAATTTTCTTTTGCATGGAAATCTTTTCTT
323 AACACATTCTCC-TCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTT
* * * ** * *
944761 TGCCCTATTTTCCTCATAATCCAAGTTCATCCAC-TAAATAAGGTAAGCATTGATTCTCGTAATA
387 TGCCCTATTTTCCTTAAAATCAAAGTTCATCC-CTTAAATAAGACAAGCATCGATTCTCGTAACA
* *
944825 GTCTTCATTCTTTTCATGATTGGGA
451 GTCTCCATTCTTTTCAAGATTGGGA
* * * * * * * *
944850 ACCAAAAATAGATTCCGTTCATAAGGGTACATGACATTGCTGCTTTGGTGTTGCAAGAAAAACTT
1 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
* ** * * *
944915 TTCTTTCCA-TAGTTTTTGATAGAATC-AA---TGAATTTTAAATAAGATAACCATGAATAC-CT
66 TTCTTTCCACCA-TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT-CTC-
* * * * * *
944974 ACACTAATCCCCATTCTTTTTAAGATTAGGCACCATAAACATAGTTTTCTCATAAGGATACTTGA
128 ATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGA
* ** * * * * *
945039 TATTGATACTTCAGTTTTGAAAGAAA--ATTTTTTCCC-CCAAAGTTTTGTGAAGTCTATGTTCA
193 TATTGATGCTTTGGTTTCGAAAGAAAGGCTTTTTTCCCACC-AATTTTTGTAAAGTCTAAGTTCA
* * * * **
945101 TGCCTCAAATGAGACGAATATGGATTCTAGCAAGAATCCTCATTCATTTTGTGATTAGGCACTAT
257 TGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATTTTCATTCATTTTGTGATTAGGCACTAT
* ** * * * *
945166 AAACATATTCTTTTCATTCGGATAAATGACATTGATGATTATT-TTTGGCATGAAAATCTTTTAT
322 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATT-TTCTTTTGCATGAAAATCTTTTCT
* * * * **
945230 TTGCCCTATTTTCCTCAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAATG
386 TTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACA
*
945295 GTCGCCATTCTTTTCAAGATTGGGA
451 GTCTCCATTCTTTTCAAGATTGGGA
* * * ** *
945320 ACTAAAAACACATTTCGTTCATTAGGATACACAACATTGATGCTTTGGTGTCGCAAGAAAAACTT
1 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
* * * * * *
945385 TTCTTTCTAGCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG--AGAGATGTAAGTAGTC
66 TTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG-AA-T-CTC
* * ** * * *
945448 ATACTAGTCCCCATTATTTTTTGGATTAGGCACTATAAACATCGTCTTCTCATTAGGATAAATGA
128 ATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGA
* * * * * ** *
945513 TATTGATGCTTTAGTTTCGGAAGAAAGCCTTTCTTCCTACCAATTTTTGTAAAGAGTAAATTCAT
193 TATTGATGCTTTGGTTTCGAAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCAT
* * * * *
945578 GCCTCAAATGAGACAAACATGGATTCTTGTATGGATCTTCATTCATTCTATGATTAGGCA-TAAT
258 GCCTCAAATGAGACAAACATGGATTCTAGTAAGGATTTTCATTCATTTTGTGATTAGGCACT-AT
* * * * *
945642 AAACATATTCACTTCTTTAGGATAAATGATATTGATGATTTTCTGTTGCATGAAAATCTTTTCTT
322 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTT
* ** * * * ** * *
945707 TGCCCTGTTTTCCTTAAAATCAAAGTTCATCTTTTCAATTAGGCAAGCATCGAGGCTCATGACAG
387 TGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAG
* *
945772 TCTCCATCCTTTTCAAGCTTGGGA
452 TCTCCATTCTTTTCAAGATTGGGA
* ** * *
945796 ACCAAGAACACATTCCCTTCATTAGGATACATGACATAAAT-CTTTAGG-GTCACAAGAAAAGTT
1 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTT-GGTGTCGCAAGAAAAGCT
* * * * * * * *
945859 TTTCTTTCCCCCGTTTTTTATAGAATCAATGTTTGTCTCTTAAATAAGGCAAACATCAGTAGTCA
65 TTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT-CTCA
* * * * *
945924 TACTAATCCCCATTATTTTCAGGATTAAGCACCATAAACATAGTCTTCTCCTTAGGATAGACGAT
129 TACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGAT
* * * * *
945989 ATTGATGCTTTGGTTTC-ACAAGAAAAGCTTTCTTCCTA-CAATTTTTGTAAAGTCTAAGCTCGT
194 ATTGATGCTTTGGTTTCGA-AAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCAT
* ** * * * **
946052 GCCTCAAATGAGGCAAACATGGATTCTAGTAAAAATCTTCCTTCATTTTGTGATTAGGTAAAATA
258 GCCTCAAATGAGACAAACATGGATTCTAGTAAGGATTTTCATTCATTTTGTGATTAGGCACTATA
* *
946117 AACACATTCTCCT-ATTTAGGATAAAGGATATTGATGATTTTCATTTGCAT-AGAAATCTTTTCT
323 AACACATTCTCCTCA-TTAGGATAAATGATATTGATGATTTTCTTTTGCATGA-AAATCTTTTCT
* * ** * * * *
946180 TTGCCCTATTTTCCTTAAAATCAAAATTCATCCATTAAATAAGGTAAGCGTTGATTCTCATGACA
386 TTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACA
*
946245 GTCTCCATTCTTTTCAAGATTAGGA
451 GTCTCCATTCTTTTCAAGATTGGGA
* * * * * *
946270 ACC-AGAACGCATTCCCTTCATTAGGATACATGTCATTGATGCTTTAGTGTCGGAAGTAAAGCTT
1 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
* * * * * *
946334 TTCTTTCAACCGTCTTTGATAGAATCAAAGTTTGACT-TTAAAATAAGACAATCATGAATACTAA
66 TTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTT-AAATAAGACAAACATGAAT-CTCA
* * * * * * *
946398 TGCTAGTCCCCATTCTTTTGAGGATTAGGCACCCTAAACATAGTCTTGTCTTTATGATACATGAT
129 TACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGAT
* ** * * *
946463 GTTGATGCTTTGGTTTCGAAAGAAAATCTTTTTTCCCACCAATTTTTGTAAGGTCTATGTTCTTG
194 ATTGATGCTTTGGTTTCGAAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATG
** *
946528 CCTCAAAAAAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGGCA-TAATA
259 CCTCAAATGAGACAAACATGGATTCTAGTAAGGATTTTCATTCATTTTGTGATTAGGCACT-ATA
* * * *
946592 AACACATTCTCCTCATTAGGATAAATGATATTAATAATTTTCTTTAGCATGGAAAA-CCTTTCTT
323 AACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAT-GAAAATCTTTTCTT
* * * * * * * *
946656 CGCCCTATTTTCCTTAAAATCAAAGTTCATACTTTAAATAAGATATGCATCAATTCTCGTAATAC
387 TGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAG
* *
946721 TCTCCGTTCTTATCAAGATT-GGA
452 TCTCCATTCTTTTCAAGATTGGGA
* * * * * *
946744 ACCAAGATCACATTCCTTTCTTTAGGATACATGAC----AT--TTTGCTG-CAGCAAGAAAAGGT
1 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTC-GCAAGAAAAGCT
** * * * *
946802 TTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGAT-TCTCAAATAAGAGAAACATGATTCGCC
65 TTTCTTTCCACCATTTTTGATAGAATCAAAGTTTG-TCTCTTAAATAAGACAAACATGAATC-TC
* * * * ** * *
946866 ATACTAATCCCCATTCCTTTCCGGATTATGCTCCATAATTATAGTCATCTC-TCTAAGATACATG
128 ATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAT-TAGGATACATG
* * *
946930 ATACTGATGTTTTGGTTTCGAAAGAAAGGCTTTTTTCCAACCAATTTTTGTAAAGTCTAAGTTCA
192 ATATTGATGCTTTGGTTTCGAAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCA
* * * * * **
946995 TGCCTCAAATGAGACAAATATGGATTCTAGTAAGGATCTTCACTCAATTTGTAATTAGGCAAAAT
257 TGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATTTTCATTCATTTTGTGATTAGGCACTAT
* *
947060 -AA-ACA--CTCCTCCTTAGGATAAATGATGTTGATGATTTTCTTTTGCAT-AGAAATCTTTTCT
322 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGA-AAATCTTTTCT
** * * * * *
947120 TTGCCCTATTTTCCCCAAAACCCATGTTCATCCCTTAAATAAGACAAGCATTGATTCTCGTAATA
386 TTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACA
* * *
947185 GTCTCTATTCTTTTTAAGATTGGAA
451 GTCTCCATTCTTTTCAAGATTGGGA
* *** * * * *
947210 ACCAAAAACAGATTTTGTTCATAAGGATACATTACATTGATGCTTTGGTGTCACAAGAAAAGGTT
1 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
* * * * * * * * *
947275 TTCTTTTCATCGTTTTTGATAGAATCAAAGTTTATCTCTTAAGTAAGAGAAACCTCAATAGTCAT
66 TTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT-CTCAT
* * **
947340 GCTAATCCCCATTATTTTCAGGATTAGGCACCATAAACATCA-TCTTCTCATTAGGATGGATGAT
130 ACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACAT-AGTCTTCTCATTAGGATACATGAT
* * * * *
947404 ATTAACGCTTTGGTTTC-ACAAGAAAGCCTTTCTTT-CTACCAATTTTTGTAAAGTCTAAGTTCG
194 ATTGATGCTTTGGTTTCGA-AAGAAAGGCTTT-TTTCCCACCAATTTTTGTAAAGTCTAAGTTCA
* * * *
947467 TGCCTCAAATGAGATAAACATGGATTCTAGTAATGATCTTT-ATTCATTTTGCGATTAGGCATTA
257 TGCCTCAAATGAGACAAACATGGATTCTAGTAAGGAT-TTTCATTCATTTTGTGATTAGGCACTA
* * *
947531 TAAACACATTCTCCTCTTTAGGATAAAAGAT-TTGATGATTTTTCTTTTGCATGGAAATCTTTTC
321 TAAACACATTCTCCTCATTAGGATAAATGATATTGATGA-TTTTCTTTTGCATGAAAATCTTTTC
* * * *
947595 TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGTATTGATTCTCATAAC
385 TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAAC
* *
947660 AGTATCCAATCTTTTCAAGATTGGGA
450 AGTCTCCATTCTTTTCAAGATTGGGA
** * * * * * * *
947686 ACCAAAAACACATTCTATTCGTAAGGATAGAAGACATTGATGCCTAGGTGTCGCAACAAAAGCTT
1 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
* * * *
947751 TTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAATCGTGAATACTTAT
66 TTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT-CTCAT
* * * * **
947816 ACCAATCTCCATTCTTTTCAGGATTAAGCACAATAAACATAGTCTTCTCATTAGGATACACAATA
130 ACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATA
* * *** * ** * * *
947881 TTAAAGCTTTGGTTTCGTGGGAAATGCTTTCGTCTCC-CTAATTTTTGTAAAGTCTATGTTCGTG
195 TTGATGCTTTGGTTTCGAAAGAAAGGCTTTTTTC-CCACCAATTTTTGTAAAGTCTAAGTTCATG
* ** * * * * *
947945 CCTCAAATGTGACAAATGTGGAGTCTAGTATGGATCTTCATTCATTTTGTGATTAGTCACAATAA
259 CCTCAAATGAGACAAACATGGATTCTAGTAAGGATTTTCATTCATTTTGTGATTAGGCACTATAA
* * * *
948010 ACACATTCTCATCTTTAGGATAAATGATACTGATGATTTTCTTTTGCATGGAAATCTTTT-TCTT
324 ACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCT-TT
* * * * * * *
948074 GCCCTATTTTCCTTAAAGTCAAAGTTCATCCCCTAAATAA-AGTAAGCATTGATTCTAGTAATAT
388 GCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGA-CAAGCATCGATTCTCGTAACAG
*
948138 TCTCCCTTCTTTTCAAGATT-GGA
452 TCTCCATTCTTTTCAAGATTGGGA
* * *
948161 AGCCAAAAACACATTTCATTCATTAAGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCT
1 A-CCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCT
* * ** * * *
948226 TTTCTTTCAACCGTCATTGATAGAATCAAA-TTTGTCTTTTATATAAGACAAACATGAATACCCA
65 TTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT-CTCA
* * *
948290 TACCAATCCCCATT-TCTTTCAGGATTAGGCACCATAAACTTAGTCTTCTCATAAGG-TACATGA
129 TACTAATCCCCATTCT-TTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGA
** * * ** * **
948353 TATTGACACATTGGTTTCGCAAGAAAGG-TTTTCTTCCCAATAATTTTTATAAAGTCTAAGTTTG
193 TATTGATGCTTTGGTTTCGAAAGAAAGGCTTTT-TTCCCACCAATTTTTGTAAAGTCTAAGTTCA
* * * *
948417 TGCCTC-AAGGCAGACAAAAATGGA-T-TAGTAATGATCTTCATTCATTTTGTGATTAGGCACTA
257 TGCCTCAAATG-AGACAAACATGGATTCTAGTAAGGATTTTCATTCATTTTGTGATTAGGCACTA
* * * * *
948479 TAAACGCATTCTCCACATTAGAATAAATGATATTGATCATTTTCTTTTGCATGAAAATATTTTCT
321 TAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCT
* * * * ** ** * *
948544 TTGCCCTATTTTCCTTAAAATAAAAATTAATCCCTTAATTGTGACAAGCAAGGATTGTCATAACA
386 TTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACA
* *
948609 ATCTCCATTCTTTTCAAGATTAGGA
451 GTCTCCATTCTTTTCAAGATTGGGA
* * * * ** *
948634 ACCAAGAACACATTCTCTTCTTTATGATACATGACATTGATGCTTTAATGTCGCAAGGAAAGCTT
1 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
** * * *
948699 TTCTTTGAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGATAAACAAGAATATTCAT
66 TTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT-CTCAT
* * * * *
948764 ACTAATCCCTATTGTTTTCAAGATTAGGCGCCATAAACATAGTCTTCTCATAAGGATACATGATA
130 ACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATA
* * * * * * * **
948829 TTGAAGCTTTGGTTTCGCAAGAAAGTCTTTCTTCCCACCATTTTTTGTAAAGTTTAACTTGGTGC
195 TTGATGCTTTGGTTTCGAAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC
* * * * * *
948894 CTCGAATGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTGTGAATAGGTACTATAAA
260 CTCAAATGAGACAAACATGGATTCTAGTAAGGATTTTCATTCATTTTGTGATTAGGCACTATAAA
* * ** * *
948959 CACATTCCCCTTATTACAATAAATGATCTTGATGATTGTCTTTTGCATGAAAATCTTTTCTTTGC
325 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGC
* * * * *
949024 CCTATTTTCCATAAAATCAAAATTCATCACTTAAATATGACAAGCAAT-GATTCTCGCAACAGTC
390 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGC-ATCGATTCTCGTAACAGTC
*
949088 TCCATTCTTTTCAAGATTAGGA
454 TCCATTCTTTTCAAGATTGGGA
* * * * * * * * *
949110 ACCGAGAACAAATTCCTTTCATTAGGATACCTGACATTGAAGCTCTGGTGTTGCAAGTAAAGCTT
1 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
* ** * * * * * *
949175 TTATTTTAATCGTCTTTGACAGAATCAAAGTTTGCCTCTTATATAAGACAAACATGAATACTCAT
66 TTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT-CTCAT
* * * * *
949240 ACTAATCCCCAATT-TTTTCAGGATTAGGCACCATAAACTTAGTATTCTCATAAGGGTATATGAT
130 ACTAATCCCC-ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGAT
* * * * * * *
949304 ATTGACGCTTTGGTTTC-ACAAAAAAGGCTCTCTTCCCACCAATTTTTATAAAGTCTATGTTCGT
194 ATTGATGCTTTGGTTTCGA-AAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCAT
* ** * * * * *
949368 GACTCAAGGGAGAGAAACATGGA-T-TAGTAATGATCTTCATTCATTTTGTGATTATGCGCTATA
258 GCCTCAAATGAGACAAACATGGATTCTAGTAAGGATTTTCATTCATTTTGTGATTAGGCACTATA
*
949431 AACACATTCTCCTCATTAGGATAAATGATATTGATGTTTTTCTTTTGCATGGAAATATC-TTT-T
323 AACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAT-GAAA-ATCTTTTCT
* * * * * * * * * *
949494 TTGCCCAATTTTCCTTAAAATAAAAATTCGTCCCTTAAATATGATAAGCAACAATTCTTGTAAAA
386 TTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACA
*
949559 GTCTCCATTCTTTTCAAGATTAGGA
451 GTCTCCATTCTTTTCAAGATTGGGA
* * * * * *
949584 ACCAAGAACACATTTCCTTCTTTAGGATACATGATATTGAAGCTTTGGTGTCGCAAGTAAAGCTT
1 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
** * * * * *
949649 TTCTTTTAACC-GTTTTGATAGAATCAAAGTTTATCTCTCAAATAAGGCAAACATGAATACACAT
66 TTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT-CTCAT
** * * **
949713 ACTAATCCATATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCGTAACCATACATGATA
130 ACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATA
* * * * * * * *
949778 TTAATGATTTGGTTTTGTAAGAAAGGCTTTTTTCGCACCATTTTTTGTAAAGTGTAAGTTCATAC
195 TTGATGCTTTGGTTTCGAAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC
* * * *
949843 CTCAAACGAGACAAACATGGATTCTAGTAATGATATTCATTCATTTTGTGATCA-GCACTATAAA
260 CTCAAATGAGACAAACATGGATTCTAGTAAGGATTTTCATTCATTTTGTGATTAGGCACTATAAA
949907 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGC
325 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGC
* * * * * * *
949972 CCAATTTT-CTTAAAATCAAACTTCATCCTTTAAATATG-CTGAGCATTGATTCTTGTAACAGTC
390 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGAC-AAGCATCGATTCTCGTAACAGTC
* *
950035 TCCATTCTTTCCAAGATTAGGA
454 TCCATTCTTTTCAAGATTGGGA
* * * *
950057 ATCAAGAACGCATTCCCTTCATTATGATACATGACATTGATGCTTTGGTG-CTGCAAG-AAAGCT
1 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTC-GCAAGAAAAGCT
* *
950120 TTTCTTTCAACCATTTTTGATAGTATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCA
65 TTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT-CTCA
* ** * ** *
950185 CACTAATCCTAATT-TTTTCAGGATTAGGCACCATAAACTTAGTCTTCTCAAAAAGATACATGAT
129 TACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGAT
** ** * * * * * **
950249 ATTGACACTTTGGTTTCTCAAGAAAGGCTTTCTTCCTACCAATTTCTGTATAGTTTAAGTTTGTG
194 ATTGATGCTTTGGTTTCGAAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATG
* * * *
950314 CCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGTTTAGGCAATATAA
259 CCTCAAATGAGACAAACATGGATTCTAGTAAGGATTTTCATTCATTTTGTGATTAGGCACTATAA
* * * * * *
950379 A-ACATTCTCCTAATTAGGATAAATGATGTTGATGATATTGTTTTACATGGAAATCTTTTC-TTG
324 ACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTG
* * * * * * * *
950442 CCCTATTTTCCTTAAAGTCAAAGTTACATCCCTCAAATATGCCATGCATTGATTCTTGCAACAGT
389 CCCTATTTTCCTTAAAATCAAAGTT-CATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGT
*
950507 CTTCATTCTTTTCAAGATTGGGA
453 CTCCATTCTTTTCAAGATTGGGA
** * ** * *
950530 ACCAAAAACACATAACCATCATTATAATACATGACATTGCTGCTTTGGTGTCGCAAG-AGAGCTT
1 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
* * * *
950594 TTCTTTCAACCATTTTTGATAGTATCAAAGTTTGCCTCTTAAATAAGACATTA-ATGAATACTCA
66 TTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACA-AACATGAAT-CTCA
* * * * * * *
950658 CACAAATCCCTATTCTTTTCAGGACTAGGCAGCATAAACTTAGTCTTCTCATAAGGATACATGAT
129 TACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGAT
** * * * * *
950723 ATTGACACTTTGATTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTG
194 ATTGATGCTTTGGTTTCGAAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATG
* * ***
950788 CCTCAAATGAGACAAACATGGATTCTAGTAAGGGTCTTCATTCATTTTACAATTAGGCACTATAA
259 CCTCAAATGAGACAAACATGGATTCTAGTAAGGATTTTCATTCATTTTGTGATTAGGCACTATAA
* ** * * * *
950853 AGACATTCTCCTTGTTAAGATAAATGATATTGATAATTTTTTTTTTGCAT-ATAAATCTTTCCTT
324 ACACATTCTCCTCATTAGGATAAATGATATTGATGA-TTTTCTTTTGCATGA-AAATCTTTTCTT
*
950917 TGCCCTATTTTCTTTAAAATC-AA-TTC-T--C--------G---A--A---A------T---AG
387 TGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAG
*
950952 TCTCCATTCTTTTCAACATTGGGA
452 TCTCCATTCTTTTCAAGATTGGGA
* *
950976 GCCAAAAACACATTCCCTTTATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
1 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
* * *
951041 TT-TTTCCACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGACTAGC-CA
66 TTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGA--ATCTCA
* * * * * * *
951104 CATTAATCCCTATTCTTTTTAGGATTAGGCACCATAAACATAGTCTACTCA-TAAGATACACGAT
129 TACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGAT
* * ** *
951168 ATTAATGCTTTGGTTTCGTAAGAAAGGCTTTTTTCCCATAAATTTTTGTAAAGTCTAAGTTCGTG
194 ATTGATGCTTTGGTTTCGAAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATG
* * * * * * **
951233 CGTCAAATGAGACAAGCAAGGATTCTAGTAATGATATTCATTCATTTTGTGACTACACACTATAA
259 CCTCAAATGAGACAAACATGGATTCTAGTAAGGATTTTCATTCATTTTGTGATTAGGCACTATAA
* * * * * *
951298 ACAAATTCTCCTCATT-GTGGTAAATGATATTAATGATTTTCTTTTGCATGGAAATCTTTTGTTG
324 ACACATTCTCCTCATTAG-GATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTT
* * * * * *
951362 GCCTTATTTTTCTTAACAATCAAAGTTCATCCATTAAATAAGGCAAGCATTGATTCTCATAACAG
388 GCCCTATTTTCCTTAA-AATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAG
*
951427 TCTCCATTCCTTTCAAGATTAGGG-
452 TCTCCATTCTTTTCAAGATT-GGGA
* * * * * *
951451 GCCAAAAACACATTCCCTTCATTAGGATACATGGCTTTGAAGCTTTGGTGTTGCAAGAAAAGGTT
1 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
* * * * * *
951516 TTCTTTCAACCGTTTTTGATAGAACCAAAG-TTGTCTCATAACTAAGACAAACATGAATAT-ATA
66 TTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATCTCATA
* ** * * * ** **
951579 TGCTAAGCCCCATTCTTTTCAGGATTAGGCATAATAAACGTAGTCTTCTCGTAACCATACACAAT
131 --CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGAT
* * * * *
951644 -TTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCGCACCATTTTTTGTAAAGTATAAGTTCGTG
194 ATTGATGCTTTGGTTTCGAAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATG
* * ** * * *
951708 CCTCAAACGAGACAAACATGGATTCCAGTAATAATATTCATTCATTTTGGGA-TCGGCACTATAA
259 CCTCAAATGAGACAAACATGGATTCTAGTAAGGATTTTCATTCATTTTGTGATTAGGCACTATAA
** * * *
951772 ATGCATTCTCCTCATTAAGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCCTTG
324 ACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTG
* * * *
951837 CCCCATTTT-CTTAAAATCAAAGTTCATCCCTTAAAAAAGACATGCATTGATTCTCGTAACAGTC
389 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTC
*
951901 TCCATTCTTTTCAAGATTAGGA
454 TCCATTCTTTTCAAGATTGGGA
* * *
951923 ATCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTG-CTGCAAGAAAAGGT
1 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTC-GCAAGAAAAGCT
* * * * *
951987 TTTCTTTCCACCCTTTTTTATATAATCAAAGTTTGTC-CTTAAATAAGACAAATATGGATAGC-C
65 TTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT-GA-ATCTC
* * * * * * * * * **
952050 ATACTAATCCCCATTCCTATCAGGATTACGCTCCTTAAATATAGTTTTCTCATTTGGATAGACAA
128 ATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGA
* ** * *
952115 TATTGATGCTTTGGTTTTC-AAAGAAAGGCTTTCTTCCCACCTTTTTTTATAAAGTGTAAGTTCA
193 TATTGATGCTTTGG-TTTCGAAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCA
* ** * * * *
952179 TGCCTCAAAT-AGACAAAAATGGATTCCGGTTAGGA-TCTCATTCATTTTATGATTAGGCACCAT
257 TGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATTTTCATTCATTTTGTGATTAGGCACTAT
* * * *
952242 AAACA-GTT-TTCTCATAAGGATACATGATATTGA
322 AAACACATTCTCCTCATTAGGATAAATGATATTGA
952275 CACTTTGGTT
Statistics
Matches: 12350, Mismatches: 2594, Indels: 1471
0.75 0.16 0.09
Matches are distributed among these distances:
444 35 0.00
445 151 0.01
446 167 0.01
447 12 0.00
448 2 0.00
450 1 0.00
451 3 0.00
452 14 0.00
453 200 0.02
454 68 0.01
455 15 0.00
456 5 0.00
458 7 0.00
459 1 0.00
460 2 0.00
461 1 0.00
463 4 0.00
464 11 0.00
465 433 0.04
466 83 0.01
467 4 0.00
468 7 0.00
469 236 0.02
470 307 0.02
471 128 0.01
472 1192 0.10
473 941 0.08
474 2374 0.19
475 1831 0.15
476 2429 0.20
477 337 0.03
478 154 0.01
479 13 0.00
480 2 0.00
481 1 0.00
482 19 0.00
483 14 0.00
484 10 0.00
485 17 0.00
486 11 0.00
487 28 0.00
488 15 0.00
489 12 0.00
490 18 0.00
491 10 0.00
492 25 0.00
493 18 0.00
494 5 0.00
495 1 0.00
496 7 0.00
497 2 0.00
498 1 0.00
499 4 0.00
500 12 0.00
501 4 0.00
502 10 0.00
503 10 0.00
504 5 0.00
505 40 0.00
506 21 0.00
507 10 0.00
508 12 0.00
509 16 0.00
510 12 0.00
511 3 0.00
512 4 0.00
513 8 0.00
514 5 0.00
515 4 0.00
516 4 0.00
517 20 0.00
518 7 0.00
519 13 0.00
520 11 0.00
521 15 0.00
522 11 0.00
523 18 0.00
524 22 0.00
525 18 0.00
526 30 0.00
527 30 0.00
528 29 0.00
529 11 0.00
530 18 0.00
531 27 0.00
532 15 0.00
533 17 0.00
534 27 0.00
535 12 0.00
536 31 0.00
537 22 0.00
538 14 0.00
539 19 0.00
540 16 0.00
541 16 0.00
542 16 0.00
543 12 0.00
544 7 0.00
545 7 0.00
546 1 0.00
547 15 0.00
548 5 0.00
549 6 0.00
550 2 0.00
551 12 0.00
552 5 0.00
553 15 0.00
554 11 0.00
555 16 0.00
556 20 0.00
557 19 0.00
558 19 0.00
559 4 0.00
560 2 0.00
561 10 0.00
562 8 0.00
563 4 0.00
564 10 0.00
565 57 0.00
566 25 0.00
567 1 0.00
568 2 0.00
572 1 0.00
573 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (475 bp):
ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
TTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATCTCATA
CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATAT
TGATGCTTTGGTTTCGAAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCC
TCAAATGAGACAAACATGGATTCTAGTAAGGATTTTCATTCATTTTGTGATTAGGCACTATAAAC
ACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCC
CTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTC
CATTCTTTTCAAGATTGGGA
Found at i:938412 original size:949 final size:948
Alignment explanation
Indices: 936123--940627 Score: 4677
Period size: 949 Copynumber: 4.7 Consensus size: 948
936113 AGTCCATGAC
* * * * * * * * *
936123 ACCAAGAACATATTCCTTTCATTAGGGTGCATGACATTGATGTTTTAGTGTCACAAGAAAAACTT
1 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCAGAAGAAAAGCTT
* * ** * ** * * * * * *
936188 TTATTTTCACTGTTTTTAATAGAATCAAAGTTTACCTCTTAAGTAAGACAACCATTAATAATTAA
66 TTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCT-TTAAATAAGACAAACATGAATACTCAT
* * * **
936253 ACAAATCCCCATTTTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCTTTAGGATACATGGCA
130 ACTAATCCCC-TTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATA
* * * *
936318 TTGATGCTTTGGTTTCACAAGAAAGGCTTTTTTCCCACCAATTTTCGTAAAGTCTAAGCTCATGC
194 TTGATGCTTTGTTTTGA-AAGAAAGGCTTTTTTCCC-CCAATTTTTGTAAAGTCTAAGTTCATGC
* * * *
936383 CTCAAATGAGACAAACATGGATTTTACTAAGGATTTTCATTCATTTTGTGATTGGGCACTATAAA
257 CTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * *
936448 CATATTCTCCTCATTATGATAAATGATATTGATGATTTTCTTTTGCATGGAAA-TATTTTCTTTG
322 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAACT-TTTTCTTTG
* * * *
936512 CCCTATTTTCC-TAAAAATCAAATTTCATCCCTTAAATATA-ACAAGAATTGATTGC-CGTAATA
386 CCCTATTTTCCAT-AAAATCAAAGTTCATCCCTTAAATA-AGACAAGCATCGATT-CTCGTAACA
* * * * * * * *
936574 GTCTTCATTCTTTTCAAAATT-GGAATCAAGAACCCATTCACTTCATTAGGGTGCATGACATTGA
448 GTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGA
* * * *
936638 TGCTTTGGTGTCGCAAGAAAAACTTTTATTTCCACTATTTTTGATAGAATCAAAGTTTA-CGT-C
513 TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACTGTTTTTGATAGAATCAAAGTTTATC-TCC
* * * *
936701 TCAAATAAGACGACCATGAAGACTCAAACTAATTCCCATTCTTTTCAAGATTAGGCACCATAAAC
577 T-AAATAAGACAAACATGAATACTCATACTAATTCCCATTCTTTTCAAGATTAGGCACCATAAAC
* * * * *
936766 ATAGTCTTCTCTTTAGGATACATGATATTGATGCTTTGCTTTCGAAAGAACGGCTTTTTTCCTAC
641 ATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGAAAGAAAGGCTTTTTTCCCAC
* * * *
936831 CAATTTTTGTAATGTCTAACTTCATGCCTCAAATGAGACAAACATAGATTCTAGTAAGGATTTTC
706 CAATTTTTGTAAAGTCTAAATTCATGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTC
* * *
936896 ATTT-ATTTTATGATTAGGCACAAAAAACACAATCTCCTCATTAGGATAAATGATATTGATGATT
771 -TTTCATTTTATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATT
* * * * ** *** * *
936960 CTCTTTTGTATGAAAATCTTCTCCATGTTGTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATA
835 TTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTAATCCCTTAAATA
* * * * * ** *
937025 AGACGAGCATCAATTCTCGTAACAAT-TATATTCTATTCCAA-ATTGGGA
900 AGGCAAGCATCGATTCTCATAACAGTCTCCATTCT-TTTCAAGATTGGGA
* * * * *
937073 ACCAAAAATACATTCCCTTCATTATGATACATGACATT-ATTGGTTTGGTGTC-GCAAGAAATGT
1 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGA-TGCTTTGGTGTCAG-AAGAAAAGC
* * * * * *
937136 TTTTCTTTCTAGCATTTTTTATAGAATCCAAGTTTGTCTCTTAAATAACATAAACATGAAT-CGT
64 TTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCT-TTAAATAAGACAAACATGAATAC-T
* * ** *
937200 CATACTAATCCCCATTATTTTCAGTATTACACACCATAAACATAGTCTT-TTATTAGGATACATG
127 CATACTAATCCCC-TTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATG
* * * * *
937264 ATATTGATGCTTTGATTTGGCAAGTAAGGATTTTTTCCCACCAATTTTTGCAAAGTCTAAGTTCA
191 ATATTGATGCTTTG-TTTTGAAAGAAAGGCTTTTTTCCC-CCAATTTTTGTAAAGTCTAAGTTCA
* * * *
937329 TGCCTCAAATGAGACAAAGATGGATTCTAGTAAGGATTTTCATTCATTTTGTGATTAAGCACAAT
254 TGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGGCACTAT
* * * * *
937394 AAACACCTTCTCCTCATCAGGATAAATGACATTGATGATTTTCTTTTGCAT-AGAAGTATTTTCT
319 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAACT-TTTTCT
* * * *
937458 TTGCCCTATTTCCCATAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTATCGTAACA
383 TTGCCCTATTTTCCATAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACA
* * * * * * *
937523 GTCTCCATCCTATTCATGATTGGGAACCAAAAACATATTCCCTACATTAGGACACCTGACATTGA
448 GTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGA
* *
937588 TGC-TTGGCGTCACAAGAAAAGCTTTTCTTTCAACTGTTTTTGATAGAATCAAAGTTTATCTCCT
513 TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACTGTTTTTGATAGAATCAAAGTTTATCTCCT
* * *
937652 CAATAAGACAAACATGAATAGTCATACTAATTTCCATTCTTTTCAAGATTAGGCACCATAAACAT
578 AAATAAGACAAACATGAATACTCATACTAATTCCCATTCTTTTCAAGATTAGGCACCATAAACAT
* * * * ** *
937717 AGTCTTCACATAAAGATACATGATATTGGTGCTTTGGTTTTGCTAG-AAGGCTTCGTTT-CCACC
643 AGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGAAAGAAAGGCTT-TTTTCCCACC
* * ** * * *
937780 AATTTTTGTGAACTCTAAATTTGTGCCCCAAATGAGACAAACATGGATTCTATTAATGATCTTCT
707 AATTTTTGTAAAGTCTAAATTCATGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCT
* * * *
937845 TTCATTTTGA-GATTAAGCACTATAAACACATTCTCCTCTTTAGGACAAATGCTATTGATGATTT
772 TTCATTTT-ATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTT
* *
937909 TCTTTTGCATGG-AATCTTTTC-TTACCCTATTTTCCTTAAAATCAAAATTAATCCC-TAAATAT
836 TCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTAATCCCTTAAATAA
* * * *
937971 GGCAAGCATCGATTCTAATAATAGTCCCCACTCTTTTCAAGATTGGGA
901 GGCAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGA
* * * **
938019 ACCAAGAACACATCCCCTTTATTAGGATACATGACATTGATGCTTTGGCAAT-AGAAGAAAAGCT
1 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGG-TGTCAGAAGAAAAGCT
* * *
938083 TTTATTTCCACCATTTTTGATAGAATCAAAGTTTGTCTTGTAAATAAGGCAACCATGAATACTCA
65 TTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTT-TAAATAAGACAAACATGAATACTCA
* * *** * * *
938148 TACTAATCCCCTTTCTTTTCAGGATTAGGCACCGTTATTGTAGTCTTCTCCTAAGGATACAAGAT
129 TACTAATCCCCTTT-TTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGAT
* *
938213 ATTGATGCTTTAGTTTTGAAAGCAAGGCTTTTTTCCCCCTAATTTTTGTAAAGTCTATGTTCATG
193 ATTGATGCTTT-GTTTTGAAAGAAAGGCTTTTTTCCCCC-AATTTTTGTAAAGTCTAAGTTCATG
* * * * *
938278 ACTGAAATGAGACAAACATGGATTCTAGTAATGATCTTAATTCATTCTGTGATTAGGCACTATAA
256 CCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGGCACTATAA
* * * * * * *
938343 ACATATTCTTCTCGTTAGGATAAATGATGTTAAAGATTTTCTTTTGCATGAAAATCTTTTTTTTT
321 ACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAA-C-TTTTTCTT
* * * * * **
938408 TGCCCTATTTTCCTTAAAATCAAAGTTCATCTCTTAAATAAGGCAAGCCTAGATTCTTATAACAG
384 TGCCCTATTTTCCATAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAG
* * * *
938473 TCTCCATTCTTTTCAAGAGTGGGAACC-AAAACTACATTTCGTTCATTAGGATACATGACACTGA
449 TCTCCATTCTTTTCAAGATTGGGAACCAAAAAC-ACATTCCCTTCATTAGGATACATGACATTGA
* * * * * * *
938537 TGCTTTAGTGTTGCAAGAAAAGCTTTTCTTTCCACCGTTATTGATAGAATGC-AAGTTTGTCTCA
513 TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACTGTTTTTGATAGAAT-CAAAGTTTATCTCC
* * *
938601 TAAATAAGACAACCATGAAT-CTCATACTAA-TCCGCATTCTTTTCAGGATTGGGCACCATAAAC
577 TAAATAAGACAAACATGAATACTCATACTAATTCC-CATTCTTTTCAAGATTAGGCACCATAAAC
* * * * * * * *
938664 ATAGTTTTCCCATTAGGGTATAGGATATTTATGCTTTGGTTTCAAAAGAAAGGCTTTTTTCCCAC
641 ATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGAAAGAAAGGCTTTTTTCCCAC
* * * *
938729 TAATTTTTGTAAAGTCTAAGTTCACGCCTCAAATGAAACAAACATGGATTCTAGTAAGGATCTTC
706 CAATTTTTGTAAAGTCTAAATTCATGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTC
* * * * *
938794 ATTCATTTTATGATTAGGCA-TAATAAACATATTCTCCTCTTTAGGGTAAATGATATTAATGATT
771 TTTCATTTTATGATTAGGCACT-ATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATT
*
938858 TTCTTTTGCATGGAAAT-TGTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAA-CCCTTAAA
835 TTCTTTTGCATGGAAATCT-TTTCTTTGCCCTATTTTCCTTAAAATCAAAATT-AATCCCTTAAA
* * * ** * *
938921 TAAAGCAGGCATTGATTCTTGTAACAGTATCCATTCGTTTCAAG-TTGGGGA
898 TAAGGCAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATT-GGGA
* * * *
938972 ACCAAAAACACATTCCC-TCTATTAGGATACGTGACATTGATGCTTTGGGGTCATAACAAAAGCT
1 ACCAAAAACACATTCCCTTC-ATTAGGATACATGACATTGATGCTTTGGTGTCAGAAGAAAAGCT
* * * * * *
939036 TTTCTTTCCACCATTATTGTTAGAATCGAAGTTTCTC-ATAAATAAGACAAACATGACTACTCAT
65 TTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTTTAAATAAGACAAACATGAATACTCAT
* * * * * * *
939100 ACTTAT-TCCTATTCTTTTCTA-TATTAGGCACCATAAATATAGTCTTCTCATAAGGTTACACGA
130 ACTAATCCCCT-TT-TTTTC-AGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGA
* * * * * *
939163 TATTGAAGCTTTGGTTTTGCAAGAAAGGCTTTCTTCTCTCCAATTTTTGTAAAGTTTAAGTTCGT
192 TATTGATGCTTT-GTTTTGAAAGAAAGGCTTTTTTC-CCCCAATTTTTGTAAAGTCTAAGTTCAT
* ** * * *
939228 GCCTCAAATGAGACAAACATGGATTCTAGCAATAATCTTTATTCATTTTGCGATTAGGCACTATT
255 GCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGGCACTATA
* * * *
939293 AACACATTCTCCTTATTAGGATTAATGATATTGATGATTTTCATTTGCATGGAAA-TCTTTTCTT
320 AACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAACT-TTTTCTT
* ** *
939357 TGCCCTATTTTTCATAAAATCAAAGTTCATCCCAAAAATAAGACAAGTATCGATTCTCGTAACAG
384 TGCCCTATTTTCCATAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAG
* * * * *
939422 CCTTCACTCTTTTCAAGATTGGGAACAAAAAACACATTCCATTCATTAGGATACATGACATTGAT
449 TCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGAT
* * * * * * * **
939487 GCCTTGGTGTGGCAAGAAAAGCTTTCCTTTCCACCAT-TTTTTAATAGAATTAAAGTTTGT-TTT
514 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTT-CAAC-TGTTTTTGATAGAATCAAAGTTTATCTCC
* * * *
939550 TAAATAAGAC-AACTATCAATACTCATACTAATCCCCCATT-TTTT-ATGGATTAAGCACCATAA
577 TAAATAAGACAAAC-ATGAATACTCATACTAAT-TCCCATTCTTTTCA-AGATTAGGCACCATAA
* * * * * * * * *
939612 ACATAGCCTCCTCGTAAGGATACTTCATATTGATGCTTCGATTTTGAAAGAAAGGCTTTTTACCC
639 ACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGAAAGAAAGGCTTTTTTCCC
* **
939677 ACAAATTTTTGTAAAGTCTATGTT--TGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCT
704 ACCAATTTTTGTAAAGTCTAAATTCATGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCT
* * * *
939740 T-TATTCATTTTGTGATTAGGAACTTTAAACACATTCTCCTCATCAGGATAAATGATATTGATGA
769 TCT-TTCATTTTATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGA
* * * *
939804 TTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTTCGTAAAAT-AAAAGTTCATCCCTTAA
833 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAA-TTAATCCCTTAA
* ** * *
939868 ATAAGGCAAGCATTGATTCTCATGTCTGTCTCTATTCTTTTCAAGATTGGGA
897 ATAAGGCAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGA
** * * * * *
939920 ATGAAAAACACATTCCCTTCATTAGGATACATAATATTGAGGCATTAGTGTCAGAAGAAAAGCTT
1 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCAGAAGAAAAGCTT
* * * * * *
939985 TTCTTTCCACCATTTTTGATAGAATCAAAGTTTGACTTTTAATTACGACAATCATGAATACTTAA
66 TTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTC-TTTAAATAAGACAAACATGAATACTCAT
* * * *
940050 AGTAATCCCCATTTTTCTCAGGATTGGGCACCATAAACATAGTCTTGTCATTAGGATACATGATA
130 ACTAATCCCC-TTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATA
* * ** * * *
940115 CTGATACTTTGGTTTCAAAAGAAAGGCTTTTTTTCCACCAATTTTTGTAAAGTCCATGTTCATGC
194 TTGATGCTTT-GTTTTGAAAGAAAGGC-TTTTTTCCCCCAATTTTTGTAAAGTCTAAGTTCATGC
* * * * *
940180 CTTAAATGAGACAAACATTGATTCTAGTAAGGATCTTCATTCATTTTGTAATTCGGCACAATAAA
257 CTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * *
940245 CACATTCTCCTCATTAGGATAAATGATATTTATAATTTTCTTTAGCATGGAAAAC-TTTTCTTTG
322 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAT-GAAAACTTTTTCTTTG
* * * * * * *
940309 TCCTATTTTCCTTAAAATCAAAGTTCATACTTTAAACAAGACATA-CATCGATTCTCGTAATACT
386 CCCTATTTTCCATAAAATCAAAGTTCATCCCTTAAATAAGACA-AGCATCGATTCTCGTAACAGT
* *
940373 CTCCATTCTTTTCAAGATT-GGAACCAAGAACACACTCCCTTCATTAGGATACATGACATTGATG
450 CTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATG
* * * * * * * * * * *
940437 CTTTGGTGTAGTAAGAAAAGGTTTTCTTTCCA-TAGTGTTTAAGAGAATTAAAATTTGTCT-GTC
515 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACT-GTTTTTGATAGAATCAAAGTTTATCTCCT-
* * * * * * * * * *
940500 AAATAAGAGAAACACGATTCCCCATACTAATCCCCATTCCTTTT-AGGATTATGCTCCATAAATA
578 AAATAAGACAAACATGAATACTCATACTAATTCCCATT-CTTTTCAAGATTAGGCACCATAAACA
* * * * *
940564 TAGTCTTCTCTTTAGGATATATGATATTGATGCTTTGGTTTCGAAA-AAATGCTTGTTTCCCACC
642 TAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGAAAGAAAGGCTTTTTTCCCACC
940628 CATTCTAGTA
Statistics
Matches: 2934, Mismatches: 541, Indels: 162
0.81 0.15 0.04
Matches are distributed among these distances:
945 32 0.01
946 176 0.06
947 182 0.06
948 445 0.15
949 886 0.30
950 795 0.27
951 251 0.09
952 40 0.01
953 127 0.04
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (948 bp):
ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCAGAAGAAAAGCTT
TTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTTTAAATAAGACAAACATGAATACTCATA
CTAATCCCCTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATT
GATGCTTTGTTTTGAAAGAAAGGCTTTTTTCCCCCAATTTTTGTAAAGTCTAAGTTCATGCCTCA
AATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGGCACTATAAACACA
TTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAACTTTTTCTTTGCCCTA
TTTTCCATAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCAT
TCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGG
TGTCGCAAGAAAAGCTTTTCTTTCAACTGTTTTTGATAGAATCAAAGTTTATCTCCTAAATAAGA
CAAACATGAATACTCATACTAATTCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCT
CATAAGGATACATGATATTGATGCTTTGGTTTCGAAAGAAAGGCTTTTTTCCCACCAATTTTTGT
AAAGTCTAAATTCATGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCTTTCATTTTA
TGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAT
GGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTAATCCCTTAAATAAGGCAAGCATC
GATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGA
Found at i:941020 original size:429 final size:429
Alignment explanation
Indices: 940200--941038 Score: 972
Period size: 429 Copynumber: 2.0 Consensus size: 429
940190 ACAAACATTG
* * * *
940200 ATTCTAGTAAGGATCTTCATTCATTTTGTAATTCGGCACAATAAACACATTCTCCTCATTAGGAT
1 ATTCTAGTAAGGATCTTCACTCATTTTGTAATTAGGCAAAATAAACACATTCTACTCATTAGGAT
* *
940265 AAATGATATTTATAATTTTCTTTAGCATGGAAAACTTTTCTTTGTCCTATTTTCCTTAAAATCAA
66 AAATGATATTGATAATTTTCTTTAGCATGGAAAACTTTTCTTTGCCCTATTTTCCTTAAAATCAA
* * **
940330 AGTTCATACTTTAAACAAGACATACATCGATTCTCGTAATACTCTCCATTCTTTTCAAGATTGGA
131 AGTTCATACCTTAAACAAGACATACATCGATTCTCATAATACTCTCCATTCGATTCAAGATTGGA
* * * *
940395 ACCAAGAACACACTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTAGTAAGAAAAGGTT
196 ACCAAAAACAAACTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTAGCAAGAAAAGATT
* * * * * *
940460 TTCTTTCCATAGTGTTTAAGAGAATTAAAATTTGTCTGTCAAATAAGAGAAACACGATTCCCCAT
261 TTCTTTCCACAGTGTTTAAGAGAATCAAAATTTGTCTCTCAAATAAGACAAACACGAATACCCAT
* * * ***
940525 ACTAATCCCCATTCCTTTTAGGATTATGCTCCATAAATATAGTCTTCTCTTTAGGATATATGATA
326 ACTAATCCCCATTCCTTTTAGGATTAGGCTCAATAAACATAGTCTTCTCAAAAGGATATATGATA
*
940590 TTGATGCTTTGGTTTCGAAAAAATGCTTGTTTCCCACCC
391 TTGATACTTTGGTTTCGAAAAAATGCTTGTTTCCCACCC
* * *
940629 ATTCTAGTAAGGATCTTCACTCGA-TTTGTGATTAGGCAAAATAAACACTTTCTACTCTTTAGGA
1 ATTCTAGTAAGGATCTTCACTC-ATTTTGTAATTAGGCAAAATAAACACATTCTACTCATTAGGA
* * * * *
940693 TAAATGATGTTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCC
65 TAAATGATATTGATAATTTTCTTTAGCATGGAAAACTTTTCTTTGCCCTATTTTCCTTAAAATCA
* * * ** * * *
940758 AAGTTTATTCCTTAAATAAGGTA-AGCATTGATTCTCATAATAGTCTCTATTCGATTCAAGATTA
130 AAGTTCATACCTTAAACAAGACATA-CATCGATTCTCATAATACTCTCCATTCGATTCAAGATT-
* * * *
940822 GGAACCAAAAACAAATTTCGTTC-TTAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAA
193 GGAACCAAAAACAAACTCCCTTCATT-AGGATACATGACATTGATGCTTTGGTGTAGCAAGAAAA
* * * * * ** * * **
940886 TATTTTCTTTCCACCGTTTTTCATAGAATCAATGTTTGTCTCTTAAATAAGACAACCTTGAATAC
257 GATTTTCTTTCCACAGTGTTTAAGAGAATCAAAATTTGTCTCTCAAATAAGACAAACACGAATAC
* * * * * *
940951 TCATACTAAT-CCTATTCTTTTTTA-GATTAGGCGT-AATAAACGTAGTTTTTTCAAAAGGATAC
322 CCATACTAATCCCCATTC-CTTTTAGGATTAGGC-TCAATAAACATAGTCTTCTCAAAAGGATA-
* *
941013 T-TGATATTGATACTTTGTTTTTGAAA
384 TATGATATTGATACTTTGGTTTCGAAA
941039 GAGAGGCTTT
Statistics
Matches: 337, Mismatches: 66, Indels: 14
0.81 0.16 0.03
Matches are distributed among these distances:
428 1 0.00
429 218 0.65
430 118 0.35
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.38
Consensus pattern (429 bp):
ATTCTAGTAAGGATCTTCACTCATTTTGTAATTAGGCAAAATAAACACATTCTACTCATTAGGAT
AAATGATATTGATAATTTTCTTTAGCATGGAAAACTTTTCTTTGCCCTATTTTCCTTAAAATCAA
AGTTCATACCTTAAACAAGACATACATCGATTCTCATAATACTCTCCATTCGATTCAAGATTGGA
ACCAAAAACAAACTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTAGCAAGAAAAGATT
TTCTTTCCACAGTGTTTAAGAGAATCAAAATTTGTCTCTCAAATAAGACAAACACGAATACCCAT
ACTAATCCCCATTCCTTTTAGGATTAGGCTCAATAAACATAGTCTTCTCAAAAGGATATATGATA
TTGATACTTTGGTTTCGAAAAAATGCTTGTTTCCCACCC
Found at i:942026 original size:435 final size:435
Alignment explanation
Indices: 941195--942058 Score: 1079
Period size: 435 Copynumber: 2.0 Consensus size: 435
941185 CTTCCTACCA
* * *** *
941195 ATTTTTTTAAAGTCTAAGTTGATACCTCAAATAAGACAAACATGGATTCTTGTATGGATCTTTAT
1 ATTTTTGTAAAATCTAAGTTGATACCTCAAATAAGACAAACATGGATTCTTGTAAAAATCTTCAT
* ** *
941260 TCATTGTCTAATTAGGCATAATAAACAAATTCTTTTCTTTAGGATAAATGATGTTGACGATTTTC
66 TCATTGTCTAATTAGGCAAAATAAACAAATTCTCCTCTTTAGGATAAATGATATTGACGATTTTC
* * * * * * * * *
941325 TTTTGCATTGAAATCTTTTCTTTGCCTTGTTTTCTTTAAAATCAAAGTTTATCCTTTATATTAGG
131 TTTTGCATAGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGG
* * * * *
941390 TAAGCATCGATTCTCGTGACAGTCTCCATCCATTTCAAGTTTGGGAACCAAGAGCACATTCCCTT
196 CAAGCATCGATTCTCATAACAGTCTCCATCCATTTCAAGATTAGGAACCAAGAGCACATTCCCTT
* ** *
941455 CATTAAGATACATGACATAGATGCTTTGGGGTCGCAACAAAAGCTTTTCTTTCCCCTATTTTTGA
261 CATTAAGATACATGACATAGATCCTTTGGGGTCGCAACAAAAGCTTTTCTTTCAACTATCTTTGA
* * * * * * *
941520 TATATTTAAAGTTTGTCTCTCAAATAAGACAAACATCAATAGTCATTCTAATCTCCATTACTTTT
326 TAGAATCAAAGTTTGACTCTCAAATAAGACAAACATCAATACTCATGCTAATCCCCATTACTTTT
*
941585 AGGATTACGCACCATAAACATAGTCTTCTCTATAGGATAGACGAT
391 AGGATTACGCACCATAAACATAGTCTTATCTATAGGATAGACGAT
* * *
941630 ATTTTTGTAAAATCTAAGTTCG-TGCCTCAAATGAGGA-AAACATTGATTCTTGTAAAAATCTTC
1 ATTTTTGTAAAATCTAAGTT-GATACCTCAAAT-AAGACAAACATGGATTCTTGTAAAAATCTTC
* * * * *
941693 ATTCATTTTGTGATTAGGCAAAATAAACACATTCTCCTCTTTAGGATAAA-GAATATTGATGATT
64 ATTCATTGTCTAATTAGGCAAAATAAACAAATTCTCCTCTTTAGGATAAATG-ATATTGACGATT
941757 TTCTTTTGCATAGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATA
128 TTCTTTTGCATAGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATA
* * * * *
941822 AGGCAAGCGTTGATTCTCATAACAGTCTCCATTCTTTTCAAGATTAGGAACCAAGAGCGCATTCC
193 AGGCAAGCATCGATTCTCATAACAGTCTCCATCCATTTCAAGATTAGGAACCAAGAGCACATTCC
* * * * * ** *
941887 CTTCGTTAGGATACATGACATTGATCCTTTGGTGTCGTAAGTAAAGCTTTTCTTTCAACTGTCTT
258 CTTCATTAAGATACATGACATAGATCCTTTGGGGTCGCAACAAAAGCTTTTCTTTCAACTATCTT
* * * * *
941952 TGATAGAATCAAAGTTTGACTTTTAAATAAGGCAATCATGAATACTCATGCTAATCCCCATT-CT
323 TGATAGAATCAAAGTTTGACTCTCAAATAAGACAAACATCAATACTCATGCTAATCCCCATTACT
* * *
942016 TTTCAGGATTAGGCACCATAAACGTAGTCTTATCTTTAGGATA
388 TTT-AGGATTACGCACCATAAACATAGTCTTATCTATAGGATA
942059 CGTAATATTG
Statistics
Matches: 360, Mismatches: 65, Indels: 8
0.83 0.15 0.02
Matches are distributed among these distances:
434 6 0.02
435 350 0.97
436 4 0.01
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.38
Consensus pattern (435 bp):
ATTTTTGTAAAATCTAAGTTGATACCTCAAATAAGACAAACATGGATTCTTGTAAAAATCTTCAT
TCATTGTCTAATTAGGCAAAATAAACAAATTCTCCTCTTTAGGATAAATGATATTGACGATTTTC
TTTTGCATAGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAATAAGG
CAAGCATCGATTCTCATAACAGTCTCCATCCATTTCAAGATTAGGAACCAAGAGCACATTCCCTT
CATTAAGATACATGACATAGATCCTTTGGGGTCGCAACAAAAGCTTTTCTTTCAACTATCTTTGA
TAGAATCAAAGTTTGACTCTCAAATAAGACAAACATCAATACTCATGCTAATCCCCATTACTTTT
AGGATTACGCACCATAAACATAGTCTTATCTATAGGATAGACGAT
Found at i:943697 original size:612 final size:612
Alignment explanation
Indices: 942517--943699 Score: 1461
Period size: 612 Copynumber: 1.9 Consensus size: 612
942507 ATAAATATAG
* * *
942517 TCTTCTCTTTAGGATACATGATATTGATGCTTTGATTTTGAAAGAAAGGCTTTTCTCCCACCAAT
1 TCTTCTCATTAGGATACATGATATTGATGCTTAGATTTCGAAAGAAAGGCTTTTCTCCCACCAAT
*
942582 TTTTGTAAAGTCTAAGTTCGTACCTCAAATAAGACAAACATGGATTCTAGTAAGGATCTTCACTC
66 TTTTGTAAAGTCTAAGTTCATACCTCAAATAAGACAAACATGGATTCTAGTAAGGATCTTCACTC
* * *
942647 AATTTGTGATTAGGAAAAATAAACACTTACTCCTCTTTAGGATAAATGACGTTGATGATTTTTTT
131 AATTTATGATTAGGAAAAATAAACACTTACTCCTCTTTAGGATAAATGACATTGATGATTTTCTT
*
942712 TTGCATGAAAATCTTTTCTTTACCCCAGTTTCCTCAAAATCCAAGTTCATCCCTTAAATAAGGCA
196 TTGCATGAAAATCTTTTCTTTACCCCAGTTTCCTCAAAATCAAAGTTCATCCCTTAAATAAGGCA
* * * * *
942777 AGCATGGATTCTCATAATAGTCTCCATTCTTTTCAAGATTGAGAACCAAAAACAGATTTCGTTCT
261 AGCATGGATTCTCATAACAGTCTCCATCCTTTTCAAGATTGAGAACCAAAAACACATTCCCTTCT
* * * * * *
942842 TAAGGATATATGATATTGATGCTTTGGTGTCACGAGAAAATCTTTTCTTTCCACCATTTTTGATA
326 TAAGGATACATGACATAGATGCTTTGGGGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATA
* * * * * **
942907 GAATTAATGTTTGTCTCTTAAATAACACAACCATGAATACTCATACTAATCCCCATTCTTTTTTG
391 AAATTAAAGTTTGTCTCTTAAATAACACAAACATCAATACTCATACTAATCCCCATTATTTTCAG
* * * **
942972 GATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACTTAATATTGATACTTCGATTTTGAAAG
456 GATTACGCACCATAAACGTACTCTTCTCATAAGGATACACAATATTGATACTTCGATTTTGAAAG
* * ** * *
943037 AAAGGCTTTTTTCCCCCAAAATTTTGTGTAGTCTATGTTCAAGCCTCAAATGAGACAAATAGAGA
521 AAAGGCTTTCTTCCACCAAAATTTTGTAAAGTCTAAGCTCAAGCCTCAAATGAGACAAATAGAGA
943102 ATTTTTGGATTAGGCACTACAACATCA
586 ATTTTTGGATTAGGCACTACAACATCA
** *
943129 TCTTCTCATTAGGATTGATGATATTGATGCATTAG-TTTCGGAAGAAA-GCTTTTCTTCCCACCA
1 TCTTCTCATTAGGATACATGATATTGATGC-TTAGATTTCGAAAGAAAGGCTTTTC-TCCCACCA
* * *
943192 ATTTTTGTAAAGTCTAAGTTCATACCTCAAATGAA-ACAAATATGGATTCTTGTATGGATCTTCA
64 ATTTTTGTAAAGTCTAAGTTCATACCTCAAAT-AAGACAAACATGGATTCTAGTAAGGATCTTCA
* * * * ** *
943256 TTC-ATTCTATGTTTAGGCATAATAAACACATT-CTTTTCTTTAGGATAAATGATATTGATGATT
128 CTCAATT-TATGATTAGGAAAAATAAACAC-TTACTCCTCTTTAGGATAAATGACATTGATGATT
* * * * * *
943319 TTCTTTTGCATGGAATTCTTTTCTTT-GCCCTGTTTTCCTTAAAATCAAAGTTCATCCTTTAAAT
191 TTCTTTTGCATGAAAATCTTTTCTTTACCCCAG-TTTCCTCAAAATCAAAGTTCATCCCTTAAAT
* * * * * * *
943383 TAGGCAAGCATTGATTCT-AGTGACAGTGTCCATCCTTTTCAAGTTTGGGAACCAATAACACATT
255 AAGGCAAGCATGGATTCTCA-TAACAGTCTCCATCCTTTTCAAGATTGAGAACCAAAAACACATT
*
943447 CCCTTCATTAA-GATACATGACATAGATGCTTTGGGGTCGCAAGAAAAGCTTTTCTTTCC-CC-T
319 CCCTTC-TTAAGGATACATGACATAGATGCTTTGGGGTCACAAGAAAAGCTTTTCTTTCCACCAT
* ** * * *
943509 GGTTTTGATAAAATTAAAGTTTTTCTCTTAAATAAGGCAAACATCAATAGTTATACTAATCTCCA
383 --TTTTGATAAAATTAAAGTTTGTCTCTTAAATAACACAAACATCAATACTCATACTAATCCCCA
* * * * * *
943574 TTATTTTCAGGATTACGCACCATAAACGTACTCTTCTCTTTAGGATAGACGATATTGATGCTTTG
446 TTATTTTCAGGATTACGCACCATAAACGTACTCTTCTCATAAGGATACACAATATTGATACTTCG
* * * **
943639 GTTTTGCAAGAAAGGCTTTCTTCCTACC-AATTTTTGTAAAGTCTAAGCTCGTGCCTCAAAT
511 ATTTTGAAAGAAAGGCTTTCTTCC-ACCAAAATTTTGTAAAGTCTAAGCTCAAGCCTCAAAT
943700 AACGCAAACA
Statistics
Matches: 479, Mismatches: 81, Indels: 22
0.82 0.14 0.04
Matches are distributed among these distances:
610 1 0.00
611 17 0.04
612 448 0.94
613 13 0.03
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.37
Consensus pattern (612 bp):
TCTTCTCATTAGGATACATGATATTGATGCTTAGATTTCGAAAGAAAGGCTTTTCTCCCACCAAT
TTTTGTAAAGTCTAAGTTCATACCTCAAATAAGACAAACATGGATTCTAGTAAGGATCTTCACTC
AATTTATGATTAGGAAAAATAAACACTTACTCCTCTTTAGGATAAATGACATTGATGATTTTCTT
TTGCATGAAAATCTTTTCTTTACCCCAGTTTCCTCAAAATCAAAGTTCATCCCTTAAATAAGGCA
AGCATGGATTCTCATAACAGTCTCCATCCTTTTCAAGATTGAGAACCAAAAACACATTCCCTTCT
TAAGGATACATGACATAGATGCTTTGGGGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATA
AAATTAAAGTTTGTCTCTTAAATAACACAAACATCAATACTCATACTAATCCCCATTATTTTCAG
GATTACGCACCATAAACGTACTCTTCTCATAAGGATACACAATATTGATACTTCGATTTTGAAAG
AAAGGCTTTCTTCCACCAAAATTTTGTAAAGTCTAAGCTCAAGCCTCAAATGAGACAAATAGAGA
ATTTTTGGATTAGGCACTACAACATCA
Found at i:952851 original size:629 final size:625
Alignment explanation
Indices: 951650--952875 Score: 1550
Period size: 629 Copynumber: 2.0 Consensus size: 625
951640 CAATTTGATG
* * * * **
951650 CTTTGGTTTCGCAAGAAAGGCTTTTTTCGCACCATTTTTTGTAAAGTATAAGTTCGTGCCTCAAA
1 CTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTACAAGTTAATGCCTCAAA
* * * * * **
951715 CGAGACAAACATGGATTCCAGTAATAATATTCATTCATTTTGGGATCGGCACTATAAATGCATTC
66 CAAGACAAACATGGATTCCACTAATAATATTCATTCACTTTGCGATAGGCACTATAAACACATTC
* *
951780 TCCTCATTAAGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCCTTGCCCCATTT
131 TCCTCATTAAGATAAATGATATTGATGATTTTCTTTTGAATGGAAATCTTTTCCTTGCCACATTT
* * *
951845 TCTTAAAATCAAAGTTCATCCCTTAAAAAAGACATGCATTGATTCTCGTAACAGTCTCCATTCTT
196 TCTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAGCATTGATTCTCGCAACAGCCTCCATTCTT
* * * *
951910 TTCAAGATTAGGAATCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGCT
261 TTCAAGATTAGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTAAAGCTTTGGTGCT
* * * * * * * *
951975 GCAAGAAAAGGTTTTCTTTCCACCCTTTTTTATATAATCAAAGTTTGTCCTTAAATAAGACAAAT
326 GCAAGAAAAGCTTTTCTTTCAACCATTTTTGATAGAACCAAAGTTTGTCCATAAATAAGACAAAC
* * * * * **
952040 ATGGATAGCCATACTAATCCCCATTCCTATCAGGATTACGCTCCTTAAATATAGTTTTCTCATTT
391 ATGAATA-CCATACTAAACCCCATTCCTATCAGGATTACGCACCATAAATATAGTCTTCTCATAA
* **
952105 GGATAGACAATATTGATGCTTTGGTTTTCAAAGAAAGGCTTTCTTCCCACCTTTTTTTATAAAGT
455 GGA-AGACAATATTGATGCTTTGGTCTTCAAAGAAAGGCTTTCTTCCCACCAATTTTTATAAAGT
* * *
952170 GTAAGTTCATGCCTCAAATAGACAAAAATGGATTCCGGTTAGGATCTCATTCATTTTATGATTAG
519 CTAAGTTCATGCCTCAAATAGACAAAAATGGATTCCAGTAAGGATCTCATTCATTTTATGATTAG
952235 GCACCATAAACAGTTTTCTCATAAGGATACATGATATTGACA
584 GCACCATAAACAGTTTTCTCATAAGGATACATGATATTGACA
*
952277 CTTTGGTTTCGCCAA-AAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCCAAGTTAATGCCTCAA
1 CTTTGGTTTCG-CAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTACAAGTTAATGCCTCAA
* ** * *
952341 ATAAGA-AAACATGGATTTTACTAATGATCTTCATTTCACTTTGCGATTAGGCACTATAAACACA
65 ACAAGACAAACATGGATTCCACTAATAATATTCA-TTCACTTTGCGA-TAGGCACTATAAACACA
** * *
952405 TTCTCCTTGTTAAGATAAATGATATTGATGATTTTCTTTTGAATGGAAATCTTTTCTTTGCCATA
128 TTCTCCTCATTAAGATAAATGATATTGATGATTTTCTTTTGAATGGAAATCTTTTCCTTGCCACA
* ** *
952470 TTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGTAAGCATTGATTCTCGCAACAGCCTCTAT
193 TTTT-CTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAGCATTGATTCTCGCAACAGCCTCCAT
* ** ** * *
952535 TCTTTTCAAGATTGGGTGCCAAAAACGTATTCCCTTCCTTAGGATACATGACTTTAAAGCTTTGG
257 TCTTTTCAAGATTAGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTAAAGCTTTGG
*
952600 TG-TCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGATAGAACCAAAGTTTGTCTCATAACTAAG
322 TGCT-GCAAGAAAAGCTTTTCTTTCAACCATTTTTGATAGAACCAAAGTTTGTC-CATAAATAAG
* * * *
952664 ACAAACATGAATA-CATATGCTAAACCCCA-TCTTTTTAGGATTAGGCACCATAAACT-TAGTCT
385 ACAAACATGAATACCATA--CTAAACCCCATTCCTATCAGGATTACGCACCATAAA-TATAGTCT
* *
952726 TCTCATAAGG-AGACAATATTGATGCTTTTG-CTTCACAAGAAAGGCTTTCTTCCCTCCAATTTT
447 TCTCATAAGGAAGACAATATTGATGCTTTGGTCTTCA-AAGAAAGGCTTTCTTCCCACCAATTTT
* * * * *
952789 TGTAAAGTCTAAGTTCATGCCTCAAATGAGATAAACATGGATTCTAGTAATGATCTTCATTCATT
511 TATAAAGTCTAAGTTCATGCCTCAAAT-AGACAAAAATGGATTCCAGTAAGGATC-TCATTCATT
* * * *
952854 TTGTGCTTATGCACTATAAACA
574 TTATGATTAGGCACCATAAACA
952876 CATTCTCCTT
Statistics
Matches: 507, Mismatches: 80, Indels: 22
0.83 0.13 0.04
Matches are distributed among these distances:
626 26 0.05
627 135 0.27
628 106 0.21
629 211 0.42
630 29 0.06
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (625 bp):
CTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTACAAGTTAATGCCTCAAA
CAAGACAAACATGGATTCCACTAATAATATTCATTCACTTTGCGATAGGCACTATAAACACATTC
TCCTCATTAAGATAAATGATATTGATGATTTTCTTTTGAATGGAAATCTTTTCCTTGCCACATTT
TCTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAGCATTGATTCTCGCAACAGCCTCCATTCTT
TTCAAGATTAGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTAAAGCTTTGGTGCT
GCAAGAAAAGCTTTTCTTTCAACCATTTTTGATAGAACCAAAGTTTGTCCATAAATAAGACAAAC
ATGAATACCATACTAAACCCCATTCCTATCAGGATTACGCACCATAAATATAGTCTTCTCATAAG
GAAGACAATATTGATGCTTTGGTCTTCAAAGAAAGGCTTTCTTCCCACCAATTTTTATAAAGTCT
AAGTTCATGCCTCAAATAGACAAAAATGGATTCCAGTAAGGATCTCATTCATTTTATGATTAGGC
ACCATAAACAGTTTTCTCATAAGGATACATGATATTGACA
Found at i:955159 original size:476 final size:476
Alignment explanation
Indices: 952229--956197 Score: 4678
Period size: 476 Copynumber: 8.4 Consensus size: 476
952219 TTCATTTTAT
* * *
952229 GATTAGGCACCATAAAC--AGTTTTCTCATAAGGATACATGATATTGACACTTTGGTTTCGCCAA
1 GATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACATGATATTGACGCTTTGGCTTCG-CAA
* * *
952292 -AAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCCAAGTTAATGCCTCAAATAAGA-AAACATGG
65 GAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGG
* * * * * *
952355 ATTTTACTAATGATCTTCATTTCACTTTGCGATTAGGCACTATAAACACATTCTCCTTGTTAAGA
130 ATTCTAGTAATGATCTTCA-TTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGA
* * *
952420 TAAATGATATTGATGATTTTCTTTTGAATGGAAATCTTTTCTTTGCCATATTTTCCTTAAAATCA
194 TAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAAAATCA
** * * *
952485 AAGTTCATCCCTTAAATAAGGTAAGCATTGATTCTCGCAACAGCCTCTATTCTTTTCAAGATTGG
259 AAGTTCATCCCTTAAATAAGACAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGG
** ** * * * *
952550 GTGCCAAAAACGTATTCCCTTCCTTAGGATACATGACTTTAAAGCTTTGGTGTCGCAAGAAAAGC
324 GAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGAAGCTTTGGTGTCACAAGAAAAGC
* * * *
952615 TTTTCTTTCAACCATTTTTGATAGAACCAAAGTTTGTCTCATAACTAAGACAAACATGAATACAT
389 TTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAAAC-T
* * *
952680 -ATGCTAAACCCCA-TCTTTTTAG
453 CATACTAATCCCCATTCTTTTCAG
* * * *
952702 GATTAGGCACCATAAACTTAGTCTTCTCATAAGGAGACA--ATATTGATGCTTTTGCTTCACAAG
1 GATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACATGATATTGACGCTTTGGCTTCGCAAG
* *
952765 AAAGGCTTTCTTCCCTCCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGATAAACATGGA
66 AAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGA
* *
952830 TTCTAGTAATGATCTTCATTCATTTTGTGCTTATGCACTATAAACACATTCTCCTTATTAGGATA
131 TTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGATA
* * *
952895 AATGATATTGATGATTTTTTTTTTGCATGGAAATCTTTTTTTTGCCCTATTTTCCTTAAAATCAA
196 AATGATATTGATGA-TTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAA
* * * * ** * *
952960 ATTTCATCCCTTAAACAAGCCAAGCATTGATTCTCATAACAGTCTGTATTGTTTTCAACATTGGG
260 AGTTCATCCCTTAAATAAGACAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGG
* * ** * * *
953025 AGCAAAAAATGCATTCCCATCATTAGGATACATGA-TTGTGAAGCTTTGGTGTCATAAGAAAAAG
325 AACCAAAAACACATTCCCTTCATTAGGATACATGACAT-TGAAGCTTTGGTGTCACAAG-AAAAG
* * * * *
953089 CATTTCTTTCAACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACGTGAATAGT
388 CTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAAACT
* * *
953154 TATACTAATCCCTATTCTTTTCAA
453 CATACTAATCCCCATTCTTTTCAG
* * * * *
953178 GATTAGGCACCATAAACTTAGTCTTCTCATAACGATACATAATATTTACACTTTGGTTTCGCAAG
1 GATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACATGATATTGACGCTTTGGCTTCGCAAG
*
953243 AAAGGCTTTCTTCCCACCAATTTTTGT-AAGTCTAAGTTCATGCATCAAATGAGACAAACATGGA
66 AAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGA
* * * * *
953307 TTTTAGTAAGGATCTTCATTCATTTTGTAATTAGGCACTATAAAGACATTCTCCTTATTAAGATA
131 TTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGATA
* * * * * * *
953372 AAAGATATTAATGATTTT-TTGTTGCAAGAAAATCTATT-TTTACCGTATTTTCTTTAAAATCAA
196 AATGATATTGATGATTTTCTT-TTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAA
* * * * *
953435 AGCTCATCCTTTAAATAAGACAAGC-TTCAATTCTCGAAACAGTCTCCATTCTTTTTAAGATTGG
260 AGTTCATCCCTTAAATAAGACAAGCATT-GATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGG
* * * * *
953499 GCACCAAAAACACATTCCCTTTATTAGGATACATAACATTGATGCTTTGGTGTCGCAAGAAAAGC
324 GAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGAAGCTTTGGTGTCACAAGAAAAGC
* * * * *
953564 TTTTCTTTCCACTATTTTTGATAGAACCAAAGTTTGTCT-TGT--ATAAGACAAACATGAATAGT
389 TTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCT-TAAATAAGACAAACATGAAAACT
* * * *
953626 AAAACTAATCCCTATTCTTTTTAG
453 CATACTAATCCCCATTCTTTTCAG
* * * * *
953650 GATTAGGCACCATAAACTTAGTCTTCTGATAAGGATATACGATATTGATGCTTT-GCTT-TCATA
1 GATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACATGATATTGACGCTTTGGCTTCGCA-A
* * *
953713 CGAAAGGCTTTCTTCCCACCAATTTTTATAAAGTCTAAGTTCATGCCTTAAATGAGACAGACATG
65 -GAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATG
* * *
953778 GATTCTACTAATGATCTTCATTCATTTTGTGATTTGGCACTATAAACACATTCTCCTCATTAGGA
129 GATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGA
* ** *
953843 TAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTGGCCCTATTTTTCTTAAAATCA
194 TAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAAAATCA
* * ** ** **
953908 AAATTTATCCCTTAAATAAGGTAAGCACCGATTCTCGTAACAGTCT-C--T-AATT-AAGA----
259 AAGTTCATCCCTTAAATAAGACAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGG
** * * * * * *
953964 G--CCAAAAATGCACTCTCTTCATTAGGATAAATGACATTGAAGCGTTGGTTTCGCAAGAAAAGC
324 GAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGAAGCTTTGGTGTCACAAGAAAAGC
* * *
954027 TTTTCTTTCAACCATTTTTGATACAATCAAAG-TT-TCTCTTAAATAAGACAAACACGAATACTC
389 TTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAAACTC
* *
954090 ACACTAATCCCCATTCTTTTTAG
454 ATACTAATCCCCATTCTTTTCAG
*
954113 GATTAGGCACCATAAA-TTAGTCTTCTCATAAGGATACATGATATTGACGCTTTGGTTTCGCAAG
1 GATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACATGATATTGACGCTTTGGCTTCGCAAG
** * * * * * *
954177 AAAGGCTTTCTTCCTTCCAATTTTTGAAAAGTCTAAGTTCGTGCCTCGAGTGAGACAAACTTAGA
66 AAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGA
*
954242 -T-TAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACGCATTCTCCTTATTAGGATA
131 TTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGATA
* *
954305 AATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTCACCCTATTTTCCTTAAAATCAAA
196 AATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAA
* * * * *
954370 ATTCATCCCTTAAAGATGACAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCAAGATTTGGA
261 GTTCATCCCTTAAATAAGACAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGA
* * * * *
954435 ACCAAGAACACATT-CCTTTATTAGGATACATGACATTGATGCTTTAGTGTCAAAAGAAAAGCTT
326 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGAAGCTTTGGTGTCACAAGAAAAGCTT
* * *
954499 TTTTTTCCACCATTTTTGATAGAATCAAAGTATGTCTCTTAAATAAGACAAACATGAATAA-TCA
391 TTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA-AACTCA
* * *
954563 TACTAGTCCCTATTAGTTTT-AG
455 TACTAATCCCCATT-CTTTTCAG
** * ** * * * * *
954585 GATTAGGCACCATAAAAATAGTCTT-TTAGTTGGGATAGACGATATTGATGCTTTTGCTTCACAA
1 GATTAGGCACCATAAACTTAGTCTTCTCA-TAAGGATACATGATATTGACGCTTTGGCTTCGCAA
* *
954649 GAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATAAGACAAACATGG
65 GAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGG
* ** * * * **
954714 ACTCTAGTAATGATCTTCATTCATTTTGCAATTAGACACTATAAATACATTCTCGTCGTTAGGAT
130 ATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGAT
* * * * * *
954779 AAATGATATTGTTCATTTCCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCTTTAATATCAA
195 AAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAA
*
954844 AGTTCATCCCTTAAATAAGACAAGCATTGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGG
260 AGTTCATCCCTTAAATAAGACAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGG
* * * * * *
954909 AACCAAAAACGCACTCCCTTAATTAGGATCCATGACATTGATGCTTTGGTGCCACAAGAAAAGCT
325 AACCAAAAACACATTCCCTTCATTAGGATACATGACATTGAAGCTTTGGTGTCACAAGAAAAGCT
* * * *
954974 TTTCTTTCCACCATTTTTGATAGAATCAATGTTTGTCTCTTAAAAAAGACAAACAT-ACAAAGTC
390 TTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGA-AAACTC
* *
955038 ACACTAATCCCTATTCTTTTCAG
454 ATACTAATCCCCATTCTTTTCAG
** * * * *** *
955061 GATTAGGCACCATAAACAAAGTTTTCTAATTAGGATAGGCGATATTGATGCTTTGGCTTCGCAAG
1 GATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACATGATATTGACGCTTTGGCTTCGCAAG
* * * * * * **
955126 AAAGGCATTT-TTTCCTCCAATTTTTGCAAAGTCTAAGTTCGTGCCTTAAATGAAACAAACATAA
66 AAAGGC-TTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGG
* * * * *
955190 ATACTAGTAATGATCTTCAATCATTTTGTGATTTGGCACCATAAAGACATTCTCCTTATTAGGAT
130 ATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGAT
* * * *
955255 AAATGATATTGGTGATTTTCTTTTGCATGGAAATCTTTTCTCTACCTTATTTTCCTTCAAATCAA
195 AAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAA
* * * * * * * * *
955320 AGTTCATCCCTTAAATAAGGCAAACTTTGATTCTCATAATAGTCTCCATTATTTTCAACACTAGG
260 AGTTCATCCCTTAAATAAGACAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGG
* * * ** * * *
955385 AGCCAAAAACACAGTCTCTTTGTTAGGATACATGACATTGAAACTTTGATATCACAAGAAAAAAG
325 AACCAAAAACACATTCCCTTCATTAGGATACATGACATTGAAGCTTTGGTGTCACAAG--AAAAG
* * * *
955450 CTTTTTTTTCAACTATTTTTGAT-GAAATCAAAGTTTGTCTCTTAAATAAGACAAACTTGAATAC
388 CTTTTCTTTCAACCATTTTTGATAG-AATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAAAC
*
955514 TCTTACTAATCCCCATTCTTTTCAG
452 TCATACTAATCCCCATTCTTTTCAG
* *
955539 GATTAGGCACCAAAAACTTAGTCTTCTCATAAGGATACATGATATTGACGCTTTGGCTTTGCAAG
1 GATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACATGATATTGACGCTTTGGCTTCGCAAG
* * * * * * * *
955604 AAAAGCTTTTTTCCCCCCAATTTTTGTAAAGTCTAAGTCCGTGCCTTAAATGAGATAAGCATGGA
66 AAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGA
* * * * * *
955669 TTCCAGTAATGATCTTCATTCATTTTGTGATGT-GGCACGACAAACGCATTCTCCTCATTAGGAC
131 TTCTAGTAATGATCTTCATTCATTTTGTGAT-TAGGCACTATAAACACATTCTCCTTATTAGGAT
* * * * *
955733 AAATGGTATTGATGACTTTCTTTTACATGGAAATCTTTTCTTTACCCTATCTTCCTTAAACTCAA
195 AAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAA
* * * * * * * *
955798 AATTCATCCCTTAAATATGCCAAGCGTTGATTCTTGCAACAGTTTCCATTCTTTCCAAGATTGGG
260 AGTTCATCCCTTAAATAAGACAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGG
* * * *
955863 AACCAAAAACACATTCCCTTCATTATGATACATGGCATT-AACGCTTCGGTGTCGCAAGAAAAGC
325 AACCAAAAACACATTCCCTTCATTAGGATACATGACATTGAA-GCTTTGGTGTCACAAGAAAAGC
* * * *
955927 TTTTCATTCAACCATTTTTTATAGAATCAATGTTTGTCTCTTAAATAAGACACACAT-AAATACT
389 TTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAA-ACT
* *
955991 CATACTCATCCCCGTTCTTTTCAG
453 CATACTAATCCCCATTCTTTTCAG
* * * *
956015 GATTAGGCACCATAATCTTTGTCTTCTCATAAGGATACATGATATTGACGCTTTAGTTTCGCAAG
1 GATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACATGATATTGACGCTTTGGCTTCGCAAG
* * *
956080 AAAGGCTTTCTTCCCACCAATTTTTCTAAAGTCAAAGTTCATGCCTCAAATGAGACAAACAAGGA
66 AAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGA
* * *
956145 TTCTAGCAACGGTCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTC
131 TTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTC
956198 TTCATGATGA
Statistics
Matches: 2975, Mismatches: 460, Indels: 119
0.84 0.13 0.03
Matches are distributed among these distances:
460 154 0.05
461 6 0.00
462 91 0.03
463 140 0.05
464 4 0.00
465 5 0.00
469 5 0.00
470 72 0.02
471 15 0.01
472 172 0.06
473 361 0.12
474 273 0.09
475 398 0.13
476 730 0.25
477 117 0.04
478 430 0.14
479 2 0.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (476 bp):
GATTAGGCACCATAAACTTAGTCTTCTCATAAGGATACATGATATTGACGCTTTGGCTTCGCAAG
AAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGA
TTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGATA
AATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAA
GTTCATCCCTTAAATAAGACAAGCATTGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGA
ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGAAGCTTTGGTGTCACAAGAAAAGCTT
TTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAAACTCAT
ACTAATCCCCATTCTTTTCAG
Found at i:961230 original size:42 final size:42
Alignment explanation
Indices: 961175--961293 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
961165 TTCTTCTCTC
* *
961175 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
961217 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
961259 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
961294 TTGCGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:961234 original size:12 final size:11
Alignment explanation
Indices: 961208--961283 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
961198 TCTATTATCT
*
961208 CTCCTGTCTCTC
1 CTCCTATCTC-C
961220 CTCCTATCATCC
1 CTCCTATC-TCC
961232 CTCCTATCT--
1 CTCCTATCTCC
*
961241 CTACTATCT--
1 CTCCTATCTCC
*
961250 CTCCTGTCTCTC
1 CTCCTATCTC-C
961262 CTCCTATCATCC
1 CTCCTATC-TCC
*
961274 CTCCTCTCTC
1 CTCCTATCTC
961284 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:961235 original size:24 final size:24
Alignment explanation
Indices: 961199--961284 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
961189 CCTCCTCTCT
* *
961199 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
961223 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
961244 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
961265 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
961285 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:961259 original size:18 final size:18
Alignment explanation
Indices: 961190--961260 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
961180 CCTGTCATCC
* *
961190 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
961208 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
961230 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
961250 CTCCTGTCTCT
1 CTCCTGTCTCT
961261 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:964160 original size:17 final size:15
Alignment explanation
Indices: 964125--964169 Score: 58
Period size: 17 Copynumber: 3.0 Consensus size: 15
964115 TACAATTTTT
964125 TGTGTATCGATAC-A
1 TGTGTATCGATACAA
964139 T-TGTATCGATACATA
1 TGTGTATCGATACA-A
964154 CTGTGTATCGATACAA
1 -TGTGTATCGATACAA
964170 GTTTGGCTAC
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
13 11 0.41
14 1 0.04
15 1 0.04
16 2 0.07
17 12 0.44
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.36
Consensus pattern (15 bp):
TGTGTATCGATACAA
Found at i:964167 original size:13 final size:13
Alignment explanation
Indices: 964127--964152 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
964117 CAATTTTTTG
964127 TGTATCGATACAT
1 TGTATCGATACAT
964140 TGTATCGATACAT
1 TGTATCGATACAT
964153 ACTGTGTATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:965314 original size:159 final size:160
Alignment explanation
Indices: 965151--965538 Score: 387
Period size: 159 Copynumber: 2.4 Consensus size: 160
965141 GTAATAGTCT
* ****
965151 CCATTCTTTTCAAGATTG-GAAACCAAAAACATATTCTAT-TCGTTGGGATACA-TGACATTGAT
1 CCATTCTTTTCAAGATTGAGAAACCAAAAACATAGTCT-TCTCACAAGGATA-AGTGACATTGAT
* * * ** **
965213 GCTTTGGTGTC-GTAAGTAAAA-TTTTTCTTTCCACCGTTATTGATAGAATTAAAGTTTGTCTCT
64 GCTTTGGTGTCAG-AAG-AAAAGCTTTTCTCTCCACCATTATTGATAGAACCAAAGTTTAACTCT
* * **
965276 TAAATATGACAAACATGAATAGTCATAGTAATCC
127 TAAATAAGACAAACATGAATAGTCACACAAATCC
* * ** * *
965310 CCATTTTTTTC-AGAATGAGGCACCATAAACATAGTCTTCTCACAAGGATAAGTGATATTGATGC
1 CCATTCTTTTCAAGATTGAGAAACCAAAAACATAGTCTTCTCACAAGGATAAGTGACATTGATGC
*
965374 TTTGGTGTCAGAAGAAAAGCTTTTCTCTCCACCATTTTTGATAGAACCAAAGTTTAACTCTTAAA
66 TTTGGTGTCAGAAGAAAAGCTTTTCTCTCCACCATTATTGATAGAACCAAAGTTTAACTCTTAAA
*
965439 TAAGATAAACATGAATAGTCACACAAATCC
131 TAAGACAAACATGAATAGTCACACAAATCC
* * ** * * * *
965469 CTATTCTTTTAAAGATT-AGGCACAAAAAACATAGTCTTCTCATAAGAATACAG-GATATTGATG
1 CCATTCTTTTCAAGATTGAGAAACCAAAAACATAGTCTTCTCACAAGGATA-AGTGACATTGATG
965532 CTTTGGT
65 CTTTGGT
965539 TTTGCAGGAA
Statistics
Matches: 190, Mismatches: 32, Indels: 14
0.81 0.14 0.06
Matches are distributed among these distances:
158 11 0.06
159 172 0.91
160 7 0.04
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.34
Consensus pattern (160 bp):
CCATTCTTTTCAAGATTGAGAAACCAAAAACATAGTCTTCTCACAAGGATAAGTGACATTGATGC
TTTGGTGTCAGAAGAAAAGCTTTTCTCTCCACCATTATTGATAGAACCAAAGTTTAACTCTTAAA
TAAGACAAACATGAATAGTCACACAAATCC
Found at i:965550 original size:159 final size:158
Alignment explanation
Indices: 965207--965572 Score: 395
Period size: 159 Copynumber: 2.3 Consensus size: 158
965197 GATACATGAC
* * * * **
965207 ATTGATGCTTTGGTGTC-GTAAGTAAAA-TTTTTCTTTCCACCGTTATTGATAGAATTAAAGTTT
1 ATTGATGCTTTGGTGTCAG--AG-AAAAGCTTTTCTCTCCACCATTTTTGATAGAACCAAAGTTT
** * * ** ** *
965270 GTCTCTTAAATATGACAAACATGAATAGTCATAGTAATCCCCATTTTTTTCAGAATGAGGCACCA
63 AACTCTTAAATAAGACAAACATGAATAGTCACACAAATCCCCATTTTTTAAAGAATGAGGCACAA
* *
965335 TAAACATAGTCTTCTCACAAGGATAAGTGAT
128 AAAACATAGTCTTCTCACAAGAATAAGTGAT
965366 ATTGATGCTTTGGTGTCAGAAGAAAAGCTTTTCTCTCCACCATTTTTGATAGAACCAAAGTTTAA
1 ATTGATGCTTTGGTGTCAG-AGAAAAGCTTTTCTCTCCACCATTTTTGATAGAACCAAAGTTTAA
* * *
965431 CTCTTAAATAAGATAAACATGAATAGTCACACAAATCCCTATTCTTTTAAAG-ATTAGGCACAAA
65 CTCTTAAATAAGACAAACATGAATAGTCACACAAATCCCCATT-TTTTAAAGAATGAGGCACAAA
*
965495 AAACATAGTCTTCTCATAAGAATACAG-GAT
129 AAACATAGTCTTCTCACAAGAATA-AGTGAT
*
965525 ATTGATGCTTTGGTTTTGCAG-GAAAAGC-TTTC-CTCCTACCAATTTTTG
1 ATTGATGCTTTGG-TGT-CAGAGAAAAGCTTTTCTCTCC-ACC-ATTTTTG
965573 CAAAGTCTAA
Statistics
Matches: 177, Mismatches: 22, Indels: 16
0.82 0.10 0.07
Matches are distributed among these distances:
157 4 0.02
158 11 0.06
159 148 0.84
160 11 0.06
161 3 0.02
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34
Consensus pattern (158 bp):
ATTGATGCTTTGGTGTCAGAGAAAAGCTTTTCTCTCCACCATTTTTGATAGAACCAAAGTTTAAC
TCTTAAATAAGACAAACATGAATAGTCACACAAATCCCCATTTTTTAAAGAATGAGGCACAAAAA
ACATAGTCTTCTCACAAGAATAAGTGAT
Found at i:968063 original size:475 final size:474
Alignment explanation
Indices: 965366--969358 Score: 4565
Period size: 476 Copynumber: 8.4 Consensus size: 474
965356 GATAAGTGAT
* * * * * * * **
965366 ATTGATGCTTTGGTGTCAGAAGAAAAGCTTTTCTCTCCACCATTTTTGATAGAACCAAAGTTTAA
1 ATTGATGCTTTGGTGTCACAAGTAATGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGT
* * * * * * * * *
965431 CTCTTAAATAAGATAAACATGAATAGTCACACAAATCCCTATTCTTTTAAAGATTAGGCACAAAA
66 CTCTTAAATAAGACAAACATGAATACTCATACTAATCCCTATACTTTTCAGGATTAGGCAC-CAT
* ** ** * *
965496 AACATAGTCTTCTCATAAGAATACAGGATATTGATGCTTTGGTTTTGCAGGAAAAGCTTTCCTCC
130 AACATAGTCTTCTCATAAGGATACTCGATATTGATGCTTTGGTTTCACAGGAAAGGCTTTCTTCC
* * * * * *
965561 TACCAATTTTTGCAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATC
195 CACC-ATTTTTGTAAAGTCTAAGCTCGTACCTCAAATGAGACAAACATGGAGTCTAGTAATGATC
* ** * *
965626 TTCATTAATTTTGCAATTAGGCACTATAAACACATTCTCCTCTTTATGATAAATGATATTGATGA
259 TTCATTCATTTTGTGATTAGGAACTATAAACACATTCTCCTCATTATGATAAATGATATTGATGA
* * * * * * **
965691 TTTTCTTTTACATGAAAATCTTTTCTTTGCCCAATTTTACCATAAAATTAAAATTCATCGTTTAA
324 TTTTCTTTTGCATGGAAATATTTTCTTTGCCCTATTTT-CCTTAAAATAAAAATTCATCCCTTAA
* * * * * * * **
965756 ATATGGCAAGC-ATCGATTATCGTAACAGT----ATTTTTTTCAAAATTGGGAACCAAGAGTACA
388 ATATGACAAGCAAT-GATTCTTGTAACCGTCACCATTCTTTTCAAGATTAGGAACCAAGAACACA
**
965816 TTCCCTTCAATAGGATACATGAC
452 TTCCCTTCTTTAGGATACATGAC
** * * * *
965839 ATTGATGCTTTGGTGTCGTAAGAAATTG-TTCTCTTTTC-ATCGTTTTTGATAG-ATAAAAGTTT
1 ATTGATGCTTTGGTGTCACAAGTAA-TGCTTTTC-TTTCAACCGTTTTTGATAGAATCAAAGTTT
* * * *** * * * * *
965901 GCCTCTTAAGTAAAACAAATGGGAATAGTCATACAAATCCAC-ATTCCTTACAGGATTAGGCACC
64 GTCTCTTAAATAAGACAAACATGAATACTCATACTAATCC-CTATACTTTTCAGGATTAGGCACC
* * * ** *
965965 ATAAACATAGTCTTCTCATAAGGATCCACGATATTGATGCCTTGGTTTTGCAAGAAAGGCTTTCT
128 AT-AACATAGTCTTCTCATAAGGATACTCGATATTGATGCTTTGGTTTCACAGGAAAGGCTTTCT
* * * * *
966030 TCCCACCTTTTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGAAGTCTAGTAATG
192 TCCCACC-ATTTTTGTAAAGTCTAAGCTCGTACCTCAAATGAGACAAACATGGAGTCTAGTAATG
* *
966095 ATCTTCATTCGTTTTGTGATTAGGAACTATAAACACATTCTCCTAATTATGATAAATGATATTGA
256 ATCTTCATTCATTTTGTGATTAGGAACTATAAACACATTCTCCTCATTATGATAAATGATATTGA
* * * *
966160 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTTCTTAAAATCAAAATTCATCCCTC
321 TGATTTTCTTTTGCATGGAAATATTTTCTTTGCCCTATTTTCCTTAAAATAAAAATTCATCCCTT
* * * *
966225 AAATATGACAAGC-ATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATT-GGAAAACAAGAAC
386 AAATATGACAAGCAAT-GATTCTTGTAACCGTCACCATTCTTTTCAAGATTAGG-AACCAAGAAC
* * * **
966288 ACGTTCCTTTCATTAGGATACACAAC
449 ACATTCCCTTCTTTAGGATACATGAC
* *
966314 ATTGATGCTTTGGTATCACAAGTAATGC-TTTCTTTCAACCGTCTTTGATAGAATCAAAGTTTGT
1 ATTGATGCTTTGGTGTCACAAGTAATGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGT
* * * * *
966378 CTCGTATATAAGACAAACATGAATGCTCATACTAAT-CATCATTCTTTTCAGGATTAGGCACTGC
66 CTCTTAAATAAGACAAACATGAATACTCATACTAATCCCT-ATACTTTTCAGGATTAGGCAC--C
* * * * **
966442 A-AACTTAGTCTTCTCATAAGGGTACAT-GATGTTGACGCCGTGGTTTCGCATCTCATAAGGGTA
128 ATAACATAGTCTTCTCATAAGGATAC-TCGATATTGATGCTTTGGTTT--CA---C---A--G--
** ** * * * * **
966505 CATGATATTAAGGAATTCTTCCCACCAAAATTTATAAAGTCTAAGTTCTTGCCTCAAGGGAGACA
180 ---G--A--AAGGCTTTCTTCCCACC-ATTTTTGTAAAGTCTAAGCTCGTACCTCAAATGAGACA
* ** * *
966570 AGCATGGA-T-TAACAATGATCTTCATTCATTTTGTGATTAGGCATTATAAACACATTCTCCTCA
237 AACATGGAGTCTAGTAATGATCTTCATTCATTTTGTGATTAGGAACTATAAACACATTCTCCTCA
* * * *
966633 TTAGGATAAATGATATTGGTGATTTTTTTGTTGCATGGAAATATTTTCTTTGCCCAATTTTCCTT
302 TTATGATAAATGATATTGATGATTTTCTT-TTGCATGGAAATATTTTCTTTGCCCTATTTTCCTT
* * * * *
966698 AAAATAAAAATCCATCCCTTAAATATGACAAGCAATCATT-TCCGTAACCAATTACCATTCTTTT
366 AAAATAAAAATTCATCCCTTAAATATGACAAGCAATGATTCT-TGTAACC-GTCACCATTCTTTT
* * **
966762 CAAGATAAGGAACCAAGAACATATTCCCTTCTTTAGGATACAACAC
429 CAAGATTAGGAACCAAGAACACATTCCCTTCTTTAGGATACATGAC
* * * *
966808 ATTGATGCTTTGGTGTCGCAAGCAATGCTTTTCTTTCAATCGTTTTTTATAGAATCAAAGTTTGT
1 ATTGATGCTTTGGTGTCACAAGTAATGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGT
* * * **
966873 CTCTTAGATAAGATAAACATAAATACTCACCCTAATCCCTATACTTTTCAGGATTAGGCACCATA
66 CTCTTAAATAAGACAAACATGAATACTCATACTAATCCCTATACTTTTCAGGATTAGGCACCATA
* * * *
966938 ACATAGTCTTCTTAAAAGGATACTCGATATTGATGCTTTGGGTTCGCAGGAAAGGCTTTCTTCCC
131 ACATAGTCTTCTCATAAGGATACTCGATATTGATGCTTTGGTTTCACAGGAAAGGCTTTCTTCCC
* ** * *
967003 ACCATTTTTCATAAAGTCTAAGCTCAAACCTCAAATAAGACAAACAAGGAGTCTAGTAATGATCT
196 ACCATTTTT-GTAAAGTCTAAGCTCGTACCTCAAATGAGACAAACATGGAGTCTAGTAATGATCT
* *
967068 TCATTCATTTTGTGATTAGGAACTATAAACACGTTGTCCTCATTATGATAAATGATATTGATGAT
260 TCATTCATTTTGTGATTAGGAACTATAAACACATTCTCCTCATTATGATAAATGATATTGATGAT
* *
967133 TTTCTTTTGCATGGAAATATTTTCTTTGCCCTATTTTCCGTAAAATAAAAATTCTTCCCTTAAAT
325 TTTCTTTTGCATGGAAATATTTTCTTTGCCCTATTTTCCTTAAAATAAAAATTCATCCCTTAAAT
** * *
967198 ATGACAAATAATGATTCTTGTAACCGTCACCATTCTTTTCAAGATTTGTAACCAAGAACACATTC
390 ATGACAAGCAATGATTCTTGTAACCGTCACCATTCTTTTCAAGATTAGGAACCAAGAACACATTC
967263 CCTTCTTTAGGATACATGAC
455 CCTTCTTTAGGATACATGAC
*
967283 ATTGATGCTTTGGTATCACAAGTAATGCTTTTCTTTCAACCGTTTTTGATAGAAATCAAAGTTTG
1 ATTGATGCTTTGGTGTCACAAGTAATGCTTTTCTTTCAACCGTTTTTGATAG-AATCAAAGTTTG
* * * *
967348 TCTCATAAATAAGAAAAACATGAATACTCATACTAATCTCTATACTTTTCAGTATTAGGCACCAT
65 TCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCTATACTTTTCAGGATTAGGCACCAT
*
967413 AACATAGTCTTCTCATAAGGATACTCGATATTGATGCTTTGGTTTCACAGGAAAGGCTTTCTTGC
130 AACATAGTCTTCTCATAAGGATACTCGATATTGATGCTTTGGTTTCACAGGAAAGGCTTTCTTCC
*
967478 CACCATTTTTTGTAAAGTCTAAACTCGTACCTCAAATGAGACAAACATGGAGTCTAGTAATGATC
195 CACCA-TTTTTGTAAAGTCTAAGCTCGTACCTCAAATGAGACAAACATGGAGTCTAGTAATGATC
*
967543 TTCATTAATTTTGTGATTAGGAACTATAAACACATTCTCCTCATTATGATAAATGATATTGATGA
259 TTCATTCATTTTGTGATTAGGAACTATAAACACATTCTCCTCATTATGATAAATGATATTGATGA
***
967608 TTTTCTTTTGCATGGAAATATTTTCTTTGTATTATTTTCCTTAAAATAAAAATTCATCCCTTAAA
324 TTTTCTTTTGCATGGAAATATTTTCTTTGCCCTATTTTCCTTAAAATAAAAATTCATCCCTTAAA
*
967673 TATGACAAGCAATGATTCTTGTAACCGTCACCATTCTTTTCAAGATTAAGAACCAAGAACACATT
389 TATGACAAGCAATGATTCTTGTAACCGTCACCATTCTTTTCAAGATTAGGAACCAAGAACACATT
*
967738 -CCTTACTTTAGAATACATGAC
454 CCCTT-CTTTAGGATACATGAC
* * * * * *
967759 ATTGACGCTTTGGTGTCACAAGTAAGGCTTTTCTTTCAAGCGTATTTAATAGAATCAAAGTTTGA
1 ATTGATGCTTTGGTGTCACAAGTAATGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGT
*
967824 CTCTTAAATAAGACAAGCATGAATACTCATACTAATCCCTATACTTTTCAGGATTAGGCACCATA
66 CTCTTAAATAAGACAAACATGAATACTCATACTAATCCCTATACTTTTCAGGATTAGGCACCATA
* *
967889 ACATAGTCTTCTCGTAAGAATACTCGATATTGATGCTTTGGTTTCACAGGAAAGGCTTTCTTCCC
131 ACATAGTCTTCTCATAAGGATACTCGATATTGATGCTTTGGTTTCACAGGAAAGGCTTTCTTCCC
* *
967954 ACCATTTTATGTAAAGTCTAAGGTCGTACCTCAAATGAGACAAACACGGAGTCTAGTAATGATCT
196 ACCATTTT-TGTAAAGTCTAAGCTCGTACCTCAAATGAGACAAACATGGAGTCTAGTAATGATCT
* * * * * * *
968019 TCATTCATTTTGAGGTTAAGAACTATAAACATATTATTCTCATTATGATAAA-GTATATTAATGA
260 TCATTCATTTTGTGATTAGGAACTATAAACACATTCTCCTCATTATGATAAATG-ATATTGATGA
* * * * * *
968083 TTTTCTTTTGTATGAAAATATTTTCTTTGCCATATTTTCCTTAAAATCAAAATCCATCTCTTAAA
324 TTTTCTTTTGCATGGAAATATTTTCTTTGCCCTATTTTCCTTAAAATAAAAATTCATCCCTTAAA
* * ** ** *** * * * * * * *
968148 TAACG-CAAACTTTGATTCTCATAATATTCTCCATTAC-TTCCAACATTGGGAGCCAAAAACGCA
389 T-ATGACAAGCAATGATTCTTGTAACCGTCACCATT-CTTTTCAAGATTAGGAACCAAGAACACA
* *
968211 TTCGCTTTTTTAGGATACATGAC
452 TTCCCTTCTTTAGGATACATGAC
** * * * *
968234 ATTGAAACTTTGG-GATCACAAGAAAAAGTTCTTTT-TTATCAACC-ATTTTGATAGAGTCAAAG
1 ATTGATGCTTTGGTG-TCACAAG--TAA-TGCTTTTCTT-TCAACCGTTTTTGATAGAATCAAAG
* * * * * * *
968296 TTTGTCTCTTAAACAATACAAACTTGAATACTCTTACTAATCCCCATTCTTTTTAGGATTAGGCA
61 TTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCTATACTTTTCAGGATTAGGCA
* * * * ** ** * *
968361 CTATAAACTTAGTCTTCTCAAAACGATACAT-GATATTGGCGCTTTGGTTTTGCAAGAAAGACTT
126 CCAT-AACATAGTCTTCTCATAAGGATAC-TCGATATTGATGCTTTGGTTTCACAGGAAAGGCTT
* * * * ** * *
968425 TCTTCCCACCAATTTTTATAAAGTCTAAGTTCGTGCCTTAAGGGAGAAAAACATGGA-T-TAATA
189 TCTTCCCACC-ATTTTTGTAAAGTCTAAGCTCGTACCTCAAATGAGACAAACATGGAGTCTAGTA
** * * *
968488 AAAATCTTCATTCATTTTGTGATTAGGCATTATAAACACATTCTCCTCATTAGGATAAAT-ATAT
253 ATGATCTTCATTCATTTTGTGATTAGGAACTATAAACACATTCTCCTCATTATGATAAATGATAT
* * *
968552 TGTTGACTTTT-TATTGCATGAAAATATTTTCTTTGCCCTATTTTCCTTAAAAT-AAAATTCATC
318 TGATGA-TTTTCTTTTGCATGGAAATATTTTCTTTGCCCTATTTTCCTTAAAATAAAAATTCATC
* * * *
968615 CCTCAAAAATGATAAGCATTGATTCTTGTAACCGTCACCATTCTTTTCAAGATTAGGAACCAAGA
382 CCTTAAATATGACAAGCAATGATTCTTGTAACCGTCACCATTCTTTTCAAGATTAGGAACCAAGA
*
968680 ACACATTCCCTTCCTTAGGATACATGAC
447 ACACATTCCCTTCTTTAGGATACATGAC
*
968708 ATTGATGCTTTGGTGTCGCAAGTAATGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGT
1 ATTGATGCTTTGGTGTCACAAGTAATGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGT
* * * * * * * * * *
968773 CTCTTAAATAAGATAGACCTGAATACTCTTATTAATCCTTACACTTTTCAAGATTAGGTACAATA
66 CTCTTAAATAAGACAAACATGAATACTCATACTAATCCCTATACTTTTCAGGATTAGGCACCATA
* * *
968838 ACATAGTCTTCTCCTAAGGATACTCGATATTGATGCTTTGGTTTCATAGGAAAGGCTTTCTTCAC
131 ACATAGTCTTCTCATAAGGATACTCGATATTGATGCTTTGGTTTCACAGGAAAGGCTTTCTTCCC
* * * *
968903 ACCATTTTTTTGTAAAGCCTAAGCTCATACTTCAAATGAGACAAACATGGAGCCTAGTAATGATC
196 ACCA--TTTTTGTAAAGTCTAAGCTCGTACCTCAAATGAGACAAACATGGAGTCTAGTAATGATC
* *
968968 TTCATTCATTTTGTGATTAGGAACTATAAACACATTCTCCTCATTATGATAAATTATTTTGATGA
259 TTCATTCATTTTGTGATTAGGAACTATAAACACATTCTCCTCATTATGATAAATGATATTGATGA
*
969033 TTTTCTTTTGCATGGAAATATTTTCTTTGCCCTATTTTCCTTAAAATAAAAATTGATCCCTTAAA
324 TTTTCTTTTGCATGGAAATATTTTCTTTGCCCTATTTTCCTTAAAATAAAAATTCATCCCTTAAA
** * * * *
969098 TACCACAAGCAATGATACTTGTAACCATCACCATTCTTTTCAAGATTGGGAACCACGAACACATT
389 TATGACAAGCAATGATTCTTGTAACCGTCACCATTCTTTTCAAGATTAGGAACCAAGAACACATT
969163 CCCTTCTTTAGGATACATGAC
454 CCCTTCTTTAGGATACATGAC
* *
969184 ATTGATGCTTTGGTGCCACAAGTAATGTTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGT
1 ATTGATGCTTTGGTGTCACAAGTAATGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGT
* *
969249 CTCTTAAATAAGATAAACATGAATACTCATACTAATCCCTATACTTTTCTGGATTAGGCACCATA
66 CTCTTAAATAAGACAAACATGAATACTCATACTAATCCCTATACTTTTCAGGATTAGGCACCATA
* * * *
969314 ACATAGCCTTCTCGTAGGGATACTCTATATTGATGCTTTGGTTTC
131 ACATAGTCTTCTCATAAGGATACTCGATATTGATGCTTTGGTTTC
969359 GCGGGAAAAA
Statistics
Matches: 2983, Mismatches: 457, Indels: 157
0.83 0.13 0.04
Matches are distributed among these distances:
470 2 0.00
471 115 0.04
472 374 0.13
473 47 0.02
474 189 0.06
475 776 0.26
476 811 0.27
477 161 0.05
478 99 0.03
479 7 0.00
480 1 0.00
483 1 0.00
484 1 0.00
486 1 0.00
489 1 0.00
490 1 0.00
492 77 0.03
493 75 0.03
494 158 0.05
495 84 0.03
496 2 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (474 bp):
ATTGATGCTTTGGTGTCACAAGTAATGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGT
CTCTTAAATAAGACAAACATGAATACTCATACTAATCCCTATACTTTTCAGGATTAGGCACCATA
ACATAGTCTTCTCATAAGGATACTCGATATTGATGCTTTGGTTTCACAGGAAAGGCTTTCTTCCC
ACCATTTTTGTAAAGTCTAAGCTCGTACCTCAAATGAGACAAACATGGAGTCTAGTAATGATCTT
CATTCATTTTGTGATTAGGAACTATAAACACATTCTCCTCATTATGATAAATGATATTGATGATT
TTCTTTTGCATGGAAATATTTTCTTTGCCCTATTTTCCTTAAAATAAAAATTCATCCCTTAAATA
TGACAAGCAATGATTCTTGTAACCGTCACCATTCTTTTCAAGATTAGGAACCAAGAACACATTCC
CTTCTTTAGGATACATGAC
Found at i:969716 original size:22 final size:22
Alignment explanation
Indices: 969689--969735 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
969679 ACAATACAAA
969689 CATGAATACTCTTACTAATCCC
1 CATGAATACTCTTACTAATCCC
969711 CATGAATACTCTTACTAATCCC
1 CATGAATACTCTTACTAATCCC
969733 CAT
1 CAT
969736 TCTTTTCAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.32, C:0.32, G:0.04, T:0.32
Consensus pattern (22 bp):
CATGAATACTCTTACTAATCCC
Found at i:970779 original size:476 final size:474
Alignment explanation
Indices: 969711--972684 Score: 3682
Period size: 476 Copynumber: 6.3 Consensus size: 474
969701 TACTAATCCC
* * * * * * * *
969711 CATGAATACTCTTACTAATCCCCATTCTTTTCAAGATTAGGCTCTATGAACTTAGTATTCTCATA
1 CATGAATACTCATACTAATCCCTATACTTTTCAGGATTAGGCACCAT-AACATAGTCTTCTCATA
** * * * *
969776 AGGATACAGGATATTGTTGCTTGGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTATAAAG
65 AGGATACTCGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAG
* * * * * * * *
969841 ACCAAGTTCCTCCCTCAAGA-GAGACAAACATGGA-T-TAATAACGATCTTCATTCATTTTTTGA
130 TCTAAGCTCGTACCTCAA-ATGAGACAAACATGGAGTCTAGTAATGATCTTCATTCATTTTGTGA
* * * *
969903 TTAGGCATTATAAACACATTCTCTTCATTAGGATAAATGATATTGATGATTTTTTGTTGCATGAA
194 TTAGGAACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTT-TTGCATGGA
* * *
969968 AATATTTTCTTTGCCCTACTTTCCTTAAAATAAAAATTCATCCCTTTAATATAACAAGCAATGAT
258 AATATTTTCTTTGCCCTATTTTCCTTAAAATAAAAATTCATCCCTTAAATATGACAAGCAATGAT
*
970033 TCACATAACCATCACCATTCTTTTCAAGATTAGGAACCAAGAACACATTCCCTTCTTTAGGATAC
323 TCTCATAACCATCACCATTCTTTTCAAGATTAGGAACCAAGAACACATTCCCTTCTTTAGGATAC
**
970098 ATGACATTGATGCTTTGGTGTTGCAAGTAATGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAG
388 ATGACATTGATGCTTTGGTGTCACAAGTAATGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAG
* *
970163 TTTGTCTCTTAAATAAGATAGA
453 TTTGTCTCTTAAATAAGACAAA
* * * * * * * *
970185 CCTGAATACTCTTATTAATCCTTACACTTTTCAAGATTAGGCACAATAACATAGTCTTCTCCTAA
1 CATGAATACTCATACTAATCCCTATACTTTTCAGGATTAGGCACCATAACATAGTCTTCTCATAA
** * * *
970250 GGATACTCGATATTGATGCTTTGGTTTCATAGGAAAGGCTTTCTTCACACCATTTTTTTGTAAAG
66 GGATACTCGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCA-ATTTTTGTAAAG
* * * *
970315 CCTAAGCTCATACTTCAAATGAGACAAACATGGAGCCTAGTAATGATCTTCATTCATTTTGTGAT
130 TCTAAGCTCGTACCTCAAATGAGACAAACATGGAGTCTAGTAATGATCTTCATTCATTTTGTGAT
* * *
970380 TAGGAACTATAAACACATTCTCCTCATTATGATAAATTATTTTGATGATTTTCTTTTGCATGGAA
195 TAGGAACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTT-TTTTGCATGGAA
* ** * *
970445 ATATTTTCTTTGCCCTATTTTCCTTAAAATAAAAATTGATCCCTTAAATACCATAAGCAATGATA
259 ATATTTTCTTTGCCCTATTTTCCTTAAAATAAAAATTCATCCCTTAAATATGACAAGCAATGATT
** * *
970510 CTTGTAACCATCACCATTCTTTTCAAGATTGGGAACCACGAACACATTCCCTTCTTTAGGATACA
324 CTCATAACCATCACCATTCTTTTCAAGATTAGGAACCAAGAACACATTCCCTTCTTTAGGATACA
* *
970575 TGACATTGATGCTTTGGTGCCACAAGTAATGCTTTTCTTTCAGCCGTTTTTGATAGAATCAAAGT
389 TGACATTGATGCTTTGGTGTCACAAGTAATGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGT
*
970640 TTGTCTCTTAAATAAGATAAA
454 TTGTCTCTTAAATAAGACAAA
* * * *
970661 CATGAATACTCATACTAATCCCTATACATTTCTGGATTAGGCACCATAACATAGTCTTCTCGTAG
1 CATGAATACTCATACTAATCCCTATACTTTTCAGGATTAGGCACCATAACATAGTCTTCTCATAA
* ** * *
970726 GGATACTCGATATTGATGCTTTGGTTTTGCGGGAAATGCTTTCTTCCCACC-ATTTTATGTAATG
66 GGATACTCGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTT-TGTAAAG
*
970790 TCTAAGCTCGTACCTCAAAGGAGACAAACATGGAGTCTAGTAATGATCTTCATTCATTTTGTGAT
130 TCTAAGCTCGTACCTCAAATGAGACAAACATGGAGTCTAGTAATGATCTTCATTCATTTTGTGAT
* * *
970855 TAGGAACTATAAACACATTCTCCTCATTATGATAAATGATGTTGATGATTTTCTTGTGCATGGAA
195 TAGGAACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTT-TTTTGCATGGAA
* * * * * * * **
970920 ATATTTTCTTTGCCATAATTCCCTTAAAATCAAAATCCATCCCTTAAATAAGGCAAGCTTTGATT
259 ATATTTTCTTTGCCCTATTTTCCTTAAAATAAAAATTCATCCCTTAAATATGACAAGCAATGATT
* * * * * * * *
970985 CTCATAA-TATTCTCCATTATTTTCAACATTGGGAGCCAAAAACACATTCGCTTCTTTAGGATAC
324 CTCATAACCA-TCACCATTCTTTTCAAGATTAGGAACCAAGAACACATTCCCTTCTTTAGGATAC
** * * * * *
971049 ATGACATTGAAACTTAGG-GATCACAAGAAAAAGCTTTTTTTTTCAACCGCTTTTGATAGAATCA
388 ATGACATTGATGCTTTGGTG-TCACAAG-TAATGC-TTTTCTTTCAACCGTTTTTGATAGAATCA
* *
971113 AAGTTTGTCTCTTAAACAATACAAA
450 AAGTTTGTCTCTTAAATAAGACAAA
* * * * * * * *
971138 CATGAATACTCTTACTAATCCCCATTCTTTTCAAGATTAGGCTCTATGAACTTAGTATTCTCATA
1 CATGAATACTCATACTAATCCCTATACTTTTCAGGATTAGGCACCAT-AACATAGTCTTCTCATA
** * * * * *
971203 AGGATACAGGATATTGTTGCTTTGGTTTTGCAATAAAGGTTTTCTTCCCACCAATTTTTATAAAG
65 AGGATACTCGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAG
* * * * * * *
971268 ACTAAGTTCCTGCCTCAAGA-GAGACAAACATGGA-T-TAATAACGATCTTCATTCATTTTTTGA
130 TCTAAGCTCGTACCTCAA-ATGAGACAAACATGGAGTCTAGTAATGATCTTCATTCATTTTGTGA
* * * * *
971330 TTAGGCATTATAAACACATTCTCTTCATTAGGATAAATGATATTGACGATTTTTTGTTGCATGAA
194 TTAGGAACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTT-TTGCATGGA
* * *
971395 AATATTTTCTTTGCCCTACTTTCCTTAAAATAAAAATTCATCCCTTTAATATAACAAGCAATGAT
258 AATATTTTCTTTGCCCTATTTTCCTTAAAATAAAAATTCATCCCTTAAATATGACAAGCAATGAT
*
971460 TCTCTTAACCATCACCATTCTTTTCAAGATTAGGAACCAAGAACACATTCCCTTCTTTAGGATAC
323 TCTCATAACCATCACCATTCTTTTCAAGATTAGGAACCAAGAACACATTCCCTTCTTTAGGATAC
* * * *
971525 ATGACATTGAGGCTTTGGTGTCTCAAATAATGCTTTT-TTTCAACCGTTTTTGATAGAATCAAAA
388 ATGACATTGATGCTTTGGTGTCACAAGTAATGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAG
*
971589 TTTGTCTCTTAAATAAGGCAAA
453 TTTGTCTCTTAAATAAGACAAA
* * *
971611 CATGAATACTCATACTAATCCCTATACTTTTTAGGATTAGGCACCATTACATAGTCTTCTCGTAA
1 CATGAATACTCATACTAATCCCTATACTTTTCAGGATTAGGCACCATAACATAGTCTTCTCATAA
* *
971676 GGATACTCGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCATTTTTTGTAAAGT
66 GGATACTCGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGT
* * *
971741 CTAAGCTTGTATCTCAAATGAGACAAACATGGAGTCTAGTAATGATCTTTATTCATTTTGTGATT
131 CTAAGCTCGTACCTCAAATGAGACAAACATGGAGTCTAGTAATGATCTTCATTCATTTTGTGATT
* *
971806 AGGAACTATAAACACATTGTCCTCATTAAGATAAATGATATTGATGAATTTTTTTTGCATGGAAA
196 AGGAACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATG-ATTTTTTTTGCATGGAAA
* *
971871 TATTTT-TTTGCCCTATTTTCCTTAAAATGAAAATTCATCCCTTAAATATGACAAACAATGATTC
260 TATTTTCTTTGCCCTATTTTCCTTAAAATAAAAATTCATCCCTTAAATATGACAAGCAATGATTC
*** * * *
971935 TTGCAACCGTCACCATTCTTTTCAAGATTAGGAACCGAGAACACATTCTCTTCTTTAGGATACAT
325 TCATAACCATCACCATTCTTTTCAAGATTAGGAACCAAGAACACATTCCCTTCTTTAGGATACAT
* * *
972000 GACATTGATGCATTGGTGTCACAAGTAATGCTTTTCTTTCAACTGTTTTTGATAGAATCAAATTT
390 GACATTGATGCTTTGGTGTCACAAGTAATGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTT
972065 TGTCTCTTAAATAAGACAAA
455 TGTCTCTTAAATAAGACAAA
* * * * *
972085 CTTGAATACTTATACTAATCCCTATACTTTTTAGTATTAGGCACCATAACATAGTCTTCTCAAAA
1 CATGAATACTCATACTAATCCCTATACTTTTCAGGATTAGGCACCATAACATAGTCTTCTCATAA
*
972150 GGATACTCGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAGGT
66 GGATACTCGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGT
* * * * * *
972215 CTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAAGGATCTCCATTCATTTTGTGATT
131 CTAAGCTCGTACCTCAAATGAGACAAACATGGAGTCTAGTAATGATCTTCATTCATTTTGTGATT
* * * * *
972280 AGGCACTATAAACACATTCTCCTTATTAGGATAAATGGTTTTCATGATTTTCTTTTGCATGGAAA
196 AGGAACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTT-TTTTGCATGGAAA
* * * * * * * ** * *
972345 TCTTTTCTTTGCTCC-ATTTTCCATAAAATCAAAGTTCACCCCATAAATAAGGTAAGC-TTTATT
260 TATTTTCTTTGC-CCTATTTTCCTTAAAATAAAAATTCATCCCTTAAATATGACAAGCAATGA-T
* * * ** * *
972408 TCTCATAA-CAGCCTCCATTCTTTTCAAGATT-GGAAACCAAAAACACATTCTATTCATTGGGAT
323 TCTCATAACCA-TCACCATTCTTTTCAAGATTAGG-AACCAAGAACACATTCCCTTCTTTAGGAT
* * * * *
972471 ACATGACATTGATGCTTTGGTGTCATAAGTAAAGTTTTTCTTCTC-GCCGTTATTGATAGAATCA
386 ACATGACATTGATGCTTTGGTGTCACAAGTAATGCTTTTCTT-TCAACCGTTTTTGATAGAATCA
*
972535 AAGTTTGTCTCTTAAATATGACAAA
450 AAGTTTGTCTCTTAAATAAGACAAA
** * * ** *
972560 TGTGAATAGTCATACTAATCCCCATTTTTTTCAGAATTAGGCACCATAAACATAGTCTTCTCATA
1 CATGAATACTCATACTAATCCCTATACTTTTCAGGATTAGGCACCAT-AACATAGTCTTCTCATA
* *
972625 AGGATACAT-GATATTGATGCTTTGGTGTCGCAAGAAAAGCTTT-TCTCTCCACC-ATTTTTG
65 AGGATAC-TCGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCT-TC-CCACCAATTTTTG
972685 ATAGAGCCAA
Statistics
Matches: 2157, Mismatches: 311, Indels: 62
0.85 0.12 0.02
Matches are distributed among these distances:
471 1 0.00
472 95 0.04
473 292 0.14
474 451 0.21
475 468 0.22
476 656 0.30
477 98 0.05
478 90 0.04
479 6 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.37
Consensus pattern (474 bp):
CATGAATACTCATACTAATCCCTATACTTTTCAGGATTAGGCACCATAACATAGTCTTCTCATAA
GGATACTCGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGT
CTAAGCTCGTACCTCAAATGAGACAAACATGGAGTCTAGTAATGATCTTCATTCATTTTGTGATT
AGGAACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTGCATGGAAAT
ATTTTCTTTGCCCTATTTTCCTTAAAATAAAAATTCATCCCTTAAATATGACAAGCAATGATTCT
CATAACCATCACCATTCTTTTCAAGATTAGGAACCAAGAACACATTCCCTTCTTTAGGATACATG
ACATTGATGCTTTGGTGTCACAAGTAATGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTT
GTCTCTTAAATAAGACAAA
Found at i:972651 original size:159 final size:159
Alignment explanation
Indices: 972467--972809 Score: 429
Period size: 159 Copynumber: 2.2 Consensus size: 159
972457 CTATTCATTG
* * * * * *
972467 GGATACATGACATTGATGCTTTGGTGTCATAAGTAAAGTTTTTCT-TCTCGCCGTTATTGATAGA
1 GGATACATGATATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTCTC-CACCATTATTGATAGA
* * * ** * * **
972531 ATCAAAGTTTGTCTCTTAAATATGACAAATGTGAATAGTCATACTAATCCCCA-TTTTTTTCAGA
65 ACCAAAGTTTATCTCTTAAATAAGACAAACATGAATAGTCACACTAATCCCCACTCTTTTAAAG-
* *
972595 ATTAGGCACCATAAACATAGTCTTCTCATAA
129 ATTAGGCACAAAAAACATAGTCTTCTCATAA
* * *
972626 GGATACATGATATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTCTCCACCATTTTTGATAGAG
1 GGATACATGATATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTCTCCACCATTATTGATAGAA
*
972691 CCAAAGTTTATCTCTTAAATAAGACAAACATGAATAGTCACACTAATCCCTACTCTTTTAAAGAT
66 CCAAAGTTTATCTCTTAAATAAGACAAACATGAATAGTCACACTAATCCCCACTCTTTTAAAGAT
972756 TAGGCACAAAAAACATAGTCTTCTCATAA
131 TAGGCACAAAAAACATAGTCTTCTCATAA
* ** *
972785 GAATACACAATATTAATGCTTTGGT
1 GGATACATGATATTGATGCTTTGGT
972810 TTTGCAAGAA
Statistics
Matches: 157, Mismatches: 25, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
159 148 0.94
160 9 0.06
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.34
Consensus pattern (159 bp):
GGATACATGATATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTCTCCACCATTATTGATAGAA
CCAAAGTTTATCTCTTAAATAAGACAAACATGAATAGTCACACTAATCCCCACTCTTTTAAAGAT
TAGGCACAAAAAACATAGTCTTCTCATAA
Found at i:972817 original size:159 final size:159
Alignment explanation
Indices: 972523--972880 Score: 429
Period size: 159 Copynumber: 2.3 Consensus size: 159
972513 CTCGCCGTTA
* * * ** * *
972523 TTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAATGTGAATAGTCATACTAATCCCCATTTT
1 TTGATAGAGTCAAAGTTTATCTCTTAAATAAGACAAACATGAATAGTCACACTAATCCCCATCTT
** * * * ** *
972588 TTTCAGAATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTGT
66 TTAAAGAATTAGGCACAAAAAACATAGTCTTCTCATAAGAATACACAATATTAATGCTTTGGTGT
972653 CGCAAGAAAAGCTTTTCTCTCC-ACC-ATTT
131 CGCAAGAAAAGC-TTTCT-TCCTACCAATTT
* *
972682 TTGATAGAGCCAAAGTTTATCTCTTAAATAAGACAAACATGAATAGTCACACTAATCCCTACTCT
1 TTGATAGAGTCAAAGTTTATCTCTTAAATAAGACAAACATGAATAGTCACACTAATCCCCA-TCT
*
972747 TTTAAAG-ATTAGGCACAAAAAACATAGTCTTCTCATAAGAATACACAATATTAATGCTTTGGTT
65 TTTAAAGAATTAGGCACAAAAAACATAGTCTTCTCATAAGAATACACAATATTAATGCTTTGGTG
* *
972811 TTGCAAGAAAGGCTTTCTTCCTACCAATTT
130 TCGCAAGAAAAGCTTTCTTCCTACCAATTT
* * * *
972841 TTG-TAAAGTCTAAGTTCATGC-CTTAAATGAGACAAACATG
1 TTGATAGAGTCAAAGTTTAT-CTCTTAAATAAGACAAACATG
972881 GATTCTACTA
Statistics
Matches: 170, Mismatches: 25, Indels: 9
0.83 0.12 0.04
Matches are distributed among these distances:
157 3 0.02
158 38 0.22
159 122 0.72
160 7 0.04
ACGTcount: A:0.35, C:0.18, G:0.14, T:0.33
Consensus pattern (159 bp):
TTGATAGAGTCAAAGTTTATCTCTTAAATAAGACAAACATGAATAGTCACACTAATCCCCATCTT
TTAAAGAATTAGGCACAAAAAACATAGTCTTCTCATAAGAATACACAATATTAATGCTTTGGTGT
CGCAAGAAAAGCTTTCTTCCTACCAATTT
Found at i:974201 original size:513 final size:517
Alignment explanation
Indices: 973259--974207 Score: 1307
Period size: 513 Copynumber: 1.8 Consensus size: 517
973249 ATTGATGCCT
*** * * *
973259 TGGTTTTGCAAGAAAGGCTTTCTTTGTACCTTTTTTGGTAAAGTCTAAGTTCGTGCCTCAAATGA
1 TGGTTTTGCAAGAAAGGCTTTCTTCCCACCATTTTTGATAAAGTCTAAGTTCGTGCCTCAAAGGA
*
973324 GACAAACATGAAATCTAGTAATGATCTTCATTCATTTTGTGATTAGGAACTATAAGCACATTCTC
66 GACAAACATGAAATCTAATAATGATCTTCATTCATTTTGTGATTAGGAACTATAAGCACATTCTC
* * * **
973389 CTCATTATGATAAATGATATTAATGATTTTCTTTTGCATGGAAATCTTTTTTTTTTGCCCTATTT
131 CTCATTAGGATAAATGATATTAATGATTTTCTTTTGCATGGAAATATATTTTCCTTGCCCTATTT
*
973454 TACTTAAAATCAAAATTCATCCCCCAAATATGACAAGCATCGATTCTCGTAACAGTCTCCATTTT
196 TACTTAAAATAAAAATTCATCCCCCAAATATGACAAGCATCGATTCTCGTAACAGTCTCCATTTT
973519 TCTCAAGATTGGAAAACAAGAACACAATCCCTTTATTGAGATACACAACATTGATGCTTTAGTGT
261 TCTCAAGATTGGAAAACAAGAACACAATCCCTTTATTGAGATACACAACATTGATGCTTTAGTGT
* * * * * *
973584 CGCAAGTAGTGTTTTTTTTTCAACCGGCTTTGATAGAATCAAAGTTTGTCTCTTACATAAGATAA
326 CGCAAGTAATGCTTTTCTTTCAACCGGCTTTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAA
*
973649 ACAAGAATACTCATACTAATCATCATTCTTTTCAGGATTAGGCACCGCAAACTTAGTCTTCTCAT
391 ACAAGAATACTCATACTAATCATCATACTTTTCAGGATTAGGCACCGCAAACTTAGTCTTCTCAT
973714 AAGGGTACATGGGGTTGATGCTGTGGTTTCGCATCTCATAAAGGTACATGATATTGACATTG
456 AAGGGTACATGGGGTTGATGCTGTGGTTTCGCATCTCATAAAGGTACATGATATTGACATTG
* * *
973776 TGGTTTTGCAAGAATGGCTTTCTTCCCACCAATTTTT-ATAAAGTCTAAGTTCTTGCCTCAAGGG
1 TGGTTTTGCAAGAAAGGCTTTCTTCCCACC-ATTTTTGATAAAGTCTAAGTTCGTGCCTCAAAGG
* * * *
973840 AGACAAACATG-GA-CTAATAATGATCGTT-ATTCATTTTGTGATTAGGCATTATTAGCACATTC
65 AGACAAACATGAAATCTAATAATGATC-TTCATTCATTTTGTGATTAGGAACTATAAGCACATTC
* *
973902 TCTTTATTAGGATAAATGATATTAATGATTTT-TTATTGCAT-GAAA-ATATTTTCCTTGCCCTA
129 TCCTCATTAGGATAAATGATATTAATGATTTTCTT-TTGCATGGAAATATATTTTCCTTGCCCTA
* ** *
973964 TTTTCCTTAAAATAAAAATTCATCCCTTAAATATGACAAGCAAT-GATTCTCGTAACCGT-TACC
193 TTTTACTTAAAATAAAAATTCATCCCCCAAATATGACAAGC-ATCGATTCTCGTAACAGTCT-CC
* * *
974027 ATTCTTT-TCAAGATTAGG-AACCAAGAACACACTCGCTTCT-TT-AGGATACA-ACACATTGAT
256 ATT-TTTCTCAAGATT-GGAAAACAAGAACACAATCCCTT-TATTGA-GATACACA-ACATTGAT
* * ** *
974087 GCTTTGGTGTCGCAAGTAATGCTTTTCTTTCAATCGTTTTTTATAAAATCAAAGTTTGTCTCTTA
316 GCTTTAGTGTCGCAAGTAATGCTTTTCTTTCAACCGGCTTTGATAAAATCAAAGTTTGTCTCTTA
* *
974152 AATAAGACAAACATGAATACTCATACTAATC-CCTATACTTTTCAGGATTAGGCACC
381 AATAAGACAAACAAGAATACTCATACTAATCATC-ATACTTTTCAGGATTAGGCACC
974208 ATAGCATAGT
Statistics
Matches: 378, Mismatches: 43, Indels: 26
0.85 0.10 0.06
Matches are distributed among these distances:
512 4 0.01
513 215 0.57
514 14 0.04
515 77 0.20
516 3 0.01
517 60 0.16
518 5 0.01
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (517 bp):
TGGTTTTGCAAGAAAGGCTTTCTTCCCACCATTTTTGATAAAGTCTAAGTTCGTGCCTCAAAGGA
GACAAACATGAAATCTAATAATGATCTTCATTCATTTTGTGATTAGGAACTATAAGCACATTCTC
CTCATTAGGATAAATGATATTAATGATTTTCTTTTGCATGGAAATATATTTTCCTTGCCCTATTT
TACTTAAAATAAAAATTCATCCCCCAAATATGACAAGCATCGATTCTCGTAACAGTCTCCATTTT
TCTCAAGATTGGAAAACAAGAACACAATCCCTTTATTGAGATACACAACATTGATGCTTTAGTGT
CGCAAGTAATGCTTTTCTTTCAACCGGCTTTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAA
ACAAGAATACTCATACTAATCATCATACTTTTCAGGATTAGGCACCGCAAACTTAGTCTTCTCAT
AAGGGTACATGGGGTTGATGCTGTGGTTTCGCATCTCATAAAGGTACATGATATTGACATTG
Found at i:974747 original size:475 final size:475
Alignment explanation
Indices: 973776--976730 Score: 3656
Period size: 475 Copynumber: 6.2 Consensus size: 475
973766 ATTGACATTG
* * * * * **
973776 TGGTTTTGCAAGAATGGCTTTCTTCCCACCAATTTTTATAAAGTCTAAGTTCTTGCCTCAAGGGA
1 TGGTTTTGCAAGAAAGGCTTTCTTCCCACCATTTTTTATAAAGTCTAAGCTCGTACCTCAAATGA
* * * * *
973841 GACAAACATGGA--CTAATAATGATCGTT-ATTCATTTTGTGATTAGGCATTATTAGCACATTCT
66 GACAAACATGGAGTCTAGTAATGATC-TTCATTCATTTTGTGATTAGGAACTATAAACACATTCT
* * * * * *
973903 CTTTATTAGGATAAATGATATTAATGATTTT-TTATTGCATGAAAATATTTTCCTTGCCCTATTT
130 CCTCATTATGATAAATGATATTGATGATTTTCTT-TTGCATGGAAATATTTTCTTTGCCCTATTT
* *
973967 TCCTTAAAATAAAAATTCATCCCTTAAATATGACAAGCAATGATTCTCGTAACCGTTACCATTCT
194 TCCTTAAAATAAAAATTCATCCCTTAAATATGACAAGCAATGATTCTCGTAATCGTCACCATTCT
* * * ** *
974032 TTTCAAGATTAGGAACCAAGAACACACTCGCTTCTTTAGGATACAACACATTGATGCTTTGGTGT
259 TTTCAAGATTAGGAACCAAAAACACATTCCCTTCTTTAGGATACATGACATTGATACTTTGGTGT
* * * *
974097 CGCAAGTAATGCTTTTCTTTCAATCGTTTTTTATAAAATCAAAGTTTGTCTCTTAAATAAGACAA
324 CACAAGTAATGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
* *
974162 ACATGAATACTCATACTAATCCCTATACTTTTCAGGATTAGGCACCATAGCATAGTCTTCTTGTA
389 ACATGAATACTCATACTAATCCCTATACTTTTCAGGATTAGGCACCATAACATAGTCTTCTCGTA
*
974227 AAGATACTCGATATTGATGCTT
454 AGGATACTCGATATTGATGCTT
* * * * *
974249 TGGTTTCGCAAGAAAGGCTTTCTTCCCACCATTTTTTGTAAAGTCTAAGCTTGTACCCCAAATTA
1 TGGTTTTGCAAGAAAGGCTTTCTTCCCACCATTTTTTATAAAGTCTAAGCTCGTACCTCAAATGA
* * *
974314 GACAAACATGGAGTCTAGTAATGATCTTCATTTATTTTGTGATTAGGAACTATAAACAGATTGTC
66 GACAAACATGGAGTCTAGTAATGATCTTCATTCATTTTGTGATTAGGAACTATAAACACATTCTC
*
974379 CTCATTATGATAAATGATATTGAGGATTTTCTTTTGCATGGAAATATTTTCTTTGCCCTATTTTC
131 CTCATTATGATAAATGATATTGATGATTTTCTTTTGCATGGAAATATTTTCTTTGCCCTATTTTC
* *
974444 CATAAAATAAAAATTCATCCCTTAAATATGACAAGCAATGATTCTCATAATCGTCACCATTCTTT
196 CTTAAAATAAAAATTCATCCCTTAAATATGACAAGCAATGATTCTCGTAATCGTCACCATTCTTT
* * ** * * *
974509 TCAAGATTAGGAACCAAGAACACATTCCCTACACTAGAAAACATGACATTGATGCTTTGGTGTCA
261 TCAAGATTAGGAACCAAAAACACATTCCCTTCTTTAGGATACATGACATTGATACTTTGGTGTCA
* * *
974574 CAAGTAAGGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATACGACAAAC
326 CAAGTAATGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
* *
974639 ATGAATACTCATACTAATCCCTATACTTCTCGGGATTAGGCACCATAACATAGTCTTCTCGTAAG
391 ATGAATACTCATACTAATCCCTATACTTTTCAGGATTAGGCACCATAACATAGTCTTCTCGTAAG
*
974704 GATACTCGATATTAATGCTT
456 GATACTCGATATTGATGCTT
* * *
974724 TGGTTTCGCAGGAAAGGCTTTCTTCCCTCCATTTTATT-TAAAGTCTAAGCTCGTACCTCAAATG
1 TGGTTTTGCAAGAAAGGCTTTCTTCCCACCATTTT-TTATAAAGTCTAAGCTCGTACCTCAAATG
*
974788 AGACAAACATGGAGTCTAGTAATGATCTTCATTCATTTTGTGACTAGGAACTATAAACACATTCT
65 AGACAAACATGGAGTCTAGTAATGATCTTCATTCATTTTGTGATTAGGAACTATAAACACATTCT
* * *
974853 CCTCATTATGATAAATGATATTAATGATTTTCTTTTGCATGGAAATATTTTATTTGCCATATTTT
130 CCTCATTATGATAAATGATATTGATGATTTTCTTTTGCATGGAAATATTTTCTTTGCCCTATTTT
* * * * * * ** ** *
974918 CCTTAAAATCAAAATCCATCTCTTAAATAAGGCAAACTTTGATTCTCGTAATATTCTCCATTAC-
195 CCTTAAAATAAAAATTCATCCCTTAAATATGACAAGCAATGATTCTCGTAATCGTCACCATT-CT
* * * * * * *
974982 TTTCAACATTGGGAGCCAAAAACGCATTCGCTTCTTTAGGATACATGACGTTGAAACTTT-GTGA
259 TTTCAAGATTAGGAACCAAAAACACATTCCCTTCTTTAGGATACATGACATTGATACTTTGGTG-
** * * ** * **
975046 TCACAACAAAAAGCTTTTTTTTATCAACAATTTTT-ATAGAATCAAAGTTTGTCCTCCTAAACCA
323 TCACAA-GTAATGC-TTTTCTT-TCAACCGTTTTTGATAGAATCAAAGTTTGT-CTCTTAAATAA
* * ** * * * *
975110 TACAAACTTGAATACTTTTACTAATCCCCATTCTTTTTAGGATTAGGCACTATATACATTAGTCT
384 GACAAACATGAATACTCATACTAATCCCTATACTTTTCAGGATTAGGCACCATA-ACA-TAGTCT
* *
975175 TCTCATAAGGATACAT-GATATTGACGCTT
447 TCTCGTAAGGATAC-TCGATATTGATGCTT
** * * *
975204 TGGTTTTGCAAGAAAGGCTTTCTTCCCATAAATTTTTATAAAGTCTAAGTTCGTGCCTCAAGA-G
1 TGGTTTTGCAAGAAAGGCTTTCTTCCCACCATTTTTTATAAAGTCTAAGCTCGTACCTCAA-ATG
* * ** * * *
975268 AGAAAAACATGGA-T-TAATAACAATCTTCATTCATTTTGTGATTAGGCATTATAAACACATTCC
65 AGACAAACATGGAGTCTAGTAATGATCTTCATTCATTTTGTGATTAGGAACTATAAACACATTCT
* * *
975331 CCTCATTAGGATAAATGATATTGATGATTTTCTGTTGCATGAAAATATTTTCTTTGCCCTATTTT
130 CCTCATTATGATAAATGATATTGATGATTTTCTTTTGCATGGAAATATTTTCTTTGCCCTATTTT
* * * *
975396 CCTTAAAATAAAAATTCATCGCTTCAAA-ATGACAAGCATTGATTCTTC-TAACCATCACCATTC
195 CCTTAAAATAAAAATTCATCCCTT-AAATATGACAAGCAATGATTC-TCGTAATCGTCACCATTC
* *
975459 TTTTCAAGATTAGGAACCAAAAACACATTCCCTTCCTTAGGATACATGACATTGATGCTTTGGTG
258 TTTTCAAGATTAGGAACCAAAAACACATTCCCTTCTTTAGGATACATGACATTGATACTTTGGTG
* *
975524 TCGCAAGTAATGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTATGTCTCTTAAATAAGACA
323 TCACAAGTAATGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
* * * * * * *
975589 AACCTGAATACCCATATTAATCCCTTTACTTTTCAGTATTAGGCACCATAACGTAGTCTTCTCCT
388 AACATGAATACTCATACTAATCCCTATACTTTTCAGGATTAGGCACCATAACATAGTCTTCTCGT
975654 AAGGATACTCGATATTGATGCTT
453 AAGGATACTCGATATTGATGCTT
* *
975677 TGG-TTT-CATAGGAAAGGCTTTCTTCACACCATTTTTTGTAAAGTCTAAGCTCGTACCTCAAAT
1 TGGTTTTGCA-A-GAAAGGCTTTCTTCCCACCATTTTTTATAAAGTCTAAGCTCGTACCTCAAAT
* * * *
975740 GAGAAAAACATGGAGTCTAGTAATGATCTTCATTCAGTTTGTGATTAGAAACTATAAACCCATTC
64 GAGACAAACATGGAGTCTAGTAATGATCTTCATTCATTTTGTGATTAGGAACTATAAACACATTC
*
975805 TCCTCTTTATGATAAATGATATTGATGATTTTCTTTTGCATGGAAATATTTTCTTTGCCCTATTT
129 TCCTCATTATGATAAATGATATTGATGATTTTCTTTTGCATGGAAATATTTTCTTTGCCCTATTT
*
975870 TCCTTAAAATAAAAATTCATCCCTTAAATATGACAAGCAATGATTCTTGTAA-CTGTCACCATTC
194 TCCTTAAAATAAAAATTCATCCCTTAAATATGACAAGCAATGATTCTCGTAATC-GTCACCATTC
* *
975934 TTTTCAAGATTAGGAACCAAGAACACATTCCTTTCTTTAGGATACATGACATTGATACTTTGGTG
258 TTTTCAAGATTAGGAACCAAAAACACATTCCCTTCTTTAGGATACATGACATTGATACTTTGGTG
* *
975999 TCACAAGTAATGTTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCCTAAATAAGACA
323 TCACAAGTAATGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
* * * *
976064 AACATGAATACTCATACTAATCCCTATACTTTTCAAGATTAGGCACAATAACAAAGGCTTCTCGT
388 AACATGAATACTCATACTAATCCCTATACTTTTCAGGATTAGGCACCATAACATAGTCTTCTCGT
976129 AAGGATACTCGATATTGATGCTT
453 AAGGATACTCGATATTGATGCTT
* * * * * * *
976152 TAGTTTTTCAGGAAAGGCTTTCTTCCCACCATTTTATGTAAAGTCTAAACCCGTACCTCAAATGA
1 TGGTTTTGCAAGAAAGGCTTTCTTCCCACCATTTTTTATAAAGTCTAAGCTCGTACCTCAAATGA
* *
976217 GACAAACATGGAGTCTAGTATTGATCTTCATTCATTTTGTGATTAGGAACTATAAACACAATCTC
66 GACAAACATGGAGTCTAGTAATGATCTTCATTCATTTTGTGATTAGGAACTATAAACACATTCTC
* * *
976282 CTCATTATGATAAATGATGTTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCATATTTTT
131 CTCATTATGATAAATGATATTGATGATTTTCTTTTGCATGGAAATATTTTCTTTGCCCTA-TTTT
* * ** * * * ** * ** *
976347 CCTTAAAATCAAAATCCATCCAATAAATAAGGCAAACTTTGATTCTCGTAGTATTCTCCATTCTT
195 CCTTAAAATAAAAATTCATCCCTTAAATATGACAAGCAATGATTCTCGTAATCGTCACCATTCTT
* * * * * ** *
976412 TTCAACATTGGGAGCCAAAAACGCTTTTGCTTCTTTAGGATACATGACATTGAAACTTTGG-GAT
260 TTCAAGATTAGGAACCAAAAACACATTCCCTTCTTTAGGATACATGACATTGATACTTTGGTG-T
* * * * * * *
976476 CACAAGAAAAAGCTTTT-TTTCATCCATTTTGGATAGAATCAAAGTTTGTCTCTTAAACAATACA
324 CACAAG-TAATGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
* * * * * * *
976540 AAC-TGGAATACTCTTACTAATCCCCA-ATCTTTTTAAGATTAGGCACTATAAACTTAGTATTCT
388 AACAT-GAATACTCATACTAATCCCTATA-CTTTTCAGGATTAGGCACCAT-AACATAGTCTTCT
* *
976603 CGTAAGGATACAT-GATATTGACGTTT
450 CGTAAGGATAC-TCGATATTGATGCTT
* * * ** **
976629 TGGTTTTGCAAGAAAAGCTTTCTTCCCACCAATTTTTATAAAGACTAAATTCGTGA-CTCAAGCG
1 TGGTTTTGCAAGAAAGGCTTTCTTCCCACCATTTTTTATAAAGTCTAAGCTCGT-ACCTCAAATG
* *
976693 AGACAAACATGGA-T-TAATAACGATCTTCATTCATTTTG
65 AGACAAACATGGAGTCTAGTAATGATCTTCATTCATTTTG
976731 GTTTTGCAAG
Statistics
Matches: 2139, Mismatches: 302, Indels: 80
0.85 0.12 0.03
Matches are distributed among these distances:
471 2 0.00
472 6 0.00
473 156 0.07
474 13 0.01
475 1230 0.58
476 229 0.11
477 130 0.06
478 264 0.12
479 14 0.01
480 93 0.04
481 2 0.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (475 bp):
TGGTTTTGCAAGAAAGGCTTTCTTCCCACCATTTTTTATAAAGTCTAAGCTCGTACCTCAAATGA
GACAAACATGGAGTCTAGTAATGATCTTCATTCATTTTGTGATTAGGAACTATAAACACATTCTC
CTCATTATGATAAATGATATTGATGATTTTCTTTTGCATGGAAATATTTTCTTTGCCCTATTTTC
CTTAAAATAAAAATTCATCCCTTAAATATGACAAGCAATGATTCTCGTAATCGTCACCATTCTTT
TCAAGATTAGGAACCAAAAACACATTCCCTTCTTTAGGATACATGACATTGATACTTTGGTGTCA
CAAGTAATGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
ATGAATACTCATACTAATCCCTATACTTTTCAGGATTAGGCACCATAACATAGTCTTCTCGTAAG
GATACTCGATATTGATGCTT
Found at i:977189 original size:28 final size:28
Alignment explanation
Indices: 977153--978424 Score: 903
Period size: 28 Copynumber: 43.1 Consensus size: 28
977143 CTAACTTGTA
* *
977153 TGGGCTTTGAAAGGATGCCACTAACTCG
1 TGGGCTTTGAAAGGATGCCACTGACTTG
* *
977181 TGGGCTTTGAAAAGTTGCCACTGACTTG
1 TGGGCTTTGAAAGGATGCCACTGACTTG
* * *
977209 TGGGCTTGGAAAAGATGCCTACTGACTTA
1 TGGGCTTTGAAAGGATGCC-ACTGACTTG
*
977238 TGGGCTTTGAAAAGGATGCCACTGAGTTG
1 TGGGCTTTG-AAAGGATGCCACTGACTTG
*** *
977267 TGAATTTTGAAAGGATGCCACTGACTTA
1 TGGGCTTTGAAAGGATGCCACTGACTTG
* * * *
977295 T-AGCTTTCAAAGGGTGCCACTGATTTG
1 TGGGCTTTGAAAGGATGCCACTGACTTG
*
977322 TGGGCTTGGAAAAGGATGCCACTGACTTG
1 TGGGCTTTG-AAAGGATGCCACTGACTTG
* * * *
977351 TGGACTTTGAAAAGATGCAACTGACTTT
1 TGGGCTTTGAAAGGATGCCACTGACTTG
* * *
977379 TGGGCTTTGAAAGGGTGCCACTGATTTA
1 TGGGCTTTGAAAGGATGCCACTGACTTG
* *
977407 TGGGC-TTGCAAAAGATGCCATTGACTTG
1 TGGGCTTTG-AAAGGATGCCACTGACTTG
*
977435 TGGGCTTTGAAAAGATGCCACTGACTTG
1 TGGGCTTTGAAAGGATGCCACTGACTTG
977463 TGGGCTTTGAAAGGATGCCACTGACTTG
1 TGGGCTTTGAAAGGATGCCACTGACTTG
* **
977491 TGGGCTTTGAAAAGATGCCACCAACTTG
1 TGGGCTTTGAAAGGATGCCACTGACTTG
**
977519 TGGGCTTTGAAAAGGATGCCACCAACTTG
1 TGGGCTTTG-AAAGGATGCCACTGACTTG
* *
977548 TGGACTTTGAAAGGATGCCACTGACTTA
1 TGGGCTTTGAAAGGATGCCACTGACTTG
* *
977576 TGGGCTTTGAAAGGGTGCCACTAACTTG
1 TGGGCTTTGAAAGGATGCCACTGACTTG
* *
977604 TGGGCTTTGAAAGGGTGCCACTGATTTG
1 TGGGCTTTGAAAGGATGCCACTGACTTG
* * *
977632 TGAGCTTTGAAATGGGTTGCCATTGACTTATG
1 TGGGCTTTGAAA--GGATGCCACTGAC-T-TG
* **
977664 TGGGCTTTGAAATGGGTTGCCACCAACTTGTG
1 TGGGCTTTGAAA--GGATGCCACTGAC-T-TG
* *
977696 TGGGATTTGAAAAGGATGCCACCGACTTG
1 TGGGCTTTG-AAAGGATGCCACTGACTTG
* *
977725 TGGACTTTGAAAGGATGCCACTAACTTG
1 TGGGCTTTGAAAGGATGCCACTGACTTG
*
977753 TGGGCTTTGAAAGGGATGCCACTGATTTG
1 TGGGCTTTGAAA-GGATGCCACTGACTTG
* * * *
977782 TGAGCTTTGAATGGGTTGCCACCGACTTGTG
1 TGGGCTTTGAA-AGGATGCCACTGAC-T-TG
* **
977813 TGGGCTTTGAAATGGGCTGCCACCAACTTGTG
1 TGGGCTTTGAAA--GGATGCCACTGAC-T-TG
* **
977845 TGGGCTTTGAAATGGGTTGCCACCAACTTGTG
1 TGGGCTTTGAAA--GGATGCCACTGAC-T-TG
* * *
977877 TGGGCTTTCAAATGAGTTGCCACCGACTTGTG
1 TGGGCTTTGAAA-G-GATGCCACTGAC-T-TG
* * *
977909 TGGGCTTTTAAATGAGTTGCCACTAACTTGTG
1 TGGGCTTTGAAA-G-GATGCCACTGAC-T-TG
* * *
977941 TGGGCTTTCAAATGAGTTGCCACCGACTTGTG
1 TGGGCTTTGAAA-G-GATGCCACTGAC-T-TG
* * *
977973 TGGGCTTTCAAATGATGCCACTAACTTG
1 TGGGCTTTGAAAGGATGCCACTGACTTG
* *
978001 TGGGCTTTGAAATGGGTTGCCACCGACTTGTG
1 TGGGCTTTGAAA--GGATGCCACTGAC-T-TG
* **
978033 TGGGCTTTGAAATGGGTTGCCACCAACTTATG
1 TGGGCTTTGAAA--GGATGCCACTGAC-T-TG
* **
978065 TGGGCTTTGAAATGGGTTGCCACCAACTTATG
1 TGGGCTTTGAAA--GGATGCCACTGAC-T-TG
* * **
978097 TAGGCTTTGAAATGGGTTGCCACCAACTTGTG
1 TGGGCTTTGAAA--GGATGCCACTGAC-T-TG
* * *
978129 TGGGCTTTCAAATGAGTTGCCAATGACTTGTG
1 TGGGCTTTGAAA-G-GATGCCACTGAC-T-TG
* * * *
978161 TGGGTTTTCAAATGAGTTGCCACCGACTTGTG
1 TGGGCTTTGAAA-G-GATGCCACTGAC-T-TG
* * * **
978193 TGGGTTTTCAAATGAGTTGCCACCAACTTGTG
1 TGGGCTTTGAAA-G-GATGCCACTGAC-T-TG
* *
978225 TGGGCTTTAAAAAGATGCCA-TCGACTTG
1 TGGGCTTTGAAAGGATGCCACT-GACTTG
* *
978253 TGGTCTTTGAAAAGGATGCCACTGACTTA
1 TGGGCTTTG-AAAGGATGCCACTGACTTG
* * *
978282 TGGACTTTGAAAGGGTGCCACTGATTTG
1 TGGGCTTTGAAAGGATGCCACTGACTTG
* * * *
978310 TGGGCTTTGAAAGGGTGCCACTAATTTA
1 TGGGCTTTGAAAGGATGCCACTGACTTG
*
978338 TGGGCTTGGAAAAGGATGCCACTGACTTG
1 TGGGCTTTG-AAAGGATGCCACTGACTTG
*
978367 TGGACTTTGAAAGGATGCCACTGACTTG
1 TGGGCTTTGAAAGGATGCCACTGACTTG
* * *
978395 TGGGCTTTGAAAGGGTGCCACGGAGTTG
1 TGGGCTTTGAAAGGATGCCACTGACTTG
978423 TG
1 TG
978425 AACTTAAAAG
Statistics
Matches: 1068, Mismatches: 148, Indels: 56
0.84 0.12 0.04
Matches are distributed among these distances:
27 24 0.02
28 425 0.40
29 172 0.16
30 48 0.04
31 27 0.03
32 369 0.35
33 3 0.00
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.30
Consensus pattern (28 bp):
TGGGCTTTGAAAGGATGCCACTGACTTG
Found at i:977346 original size:84 final size:85
Alignment explanation
Indices: 977153--978639 Score: 828
Period size: 85 Copynumber: 17.0 Consensus size: 85
977143 CTAACTTGTA
* * * * * *
977153 TGGGCTTTG-AAAGGATGCCACTAACTCGTGGGCTTTGAAAAGTTGCCACTGACTTGTGGGCTTG
1 TGGGCTTTGAAAAGGATGCCACTGACTTGTGGACTTTGAAAGGATGCCACTGACTTGTGGGCTTT
* *
977217 GAAAAGATGCCTACTGACTTA
66 GAAAGGATGCC-ACTGACTTG
* * * * *
977238 TGGGCTTTGAAAAGGATGCCACTGAGTTGTGAATTTTGAAAGGATGCCACTGACTTAT-AGCTTT
1 TGGGCTTTGAAAAGGATGCCACTGACTTGTGGACTTTGAAAGGATGCCACTGACTTGTGGGCTTT
* * *
977302 CAAAGGGTGCCACTGATTTG
66 GAAAGGATGCCACTGACTTG
* * * *
977322 TGGGCTTGGAAAAGGATGCCACTGACTTGTGGACTTTGAAAAGATGCAACTGACTTTTGGGCTTT
1 TGGGCTTTGAAAAGGATGCCACTGACTTGTGGACTTTGAAAGGATGCCACTGACTTGTGGGCTTT
* * *
977387 GAAAGGGTGCCACTGATTTA
66 GAAAGGATGCCACTGACTTG
* * *
977407 TGGGC-TTGCAAAA-GATGCCATTGACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTT
1 TGGGCTTTG-AAAAGGATGCCACTGACTTGTGGACTTTGAAAGGATGCCACTGACTTGTGGGCTT
977470 TGAAAGGATGCCACTGACTTG
65 TGAAAGGATGCCACTGACTTG
** * ** *
977491 TGGGCTTTGAAAA-GATGCCACCAACTTGTGGGCTTTGAAAAGGATGCCACCAACTTGTGGACTT
1 TGGGCTTTGAAAAGGATGCCACTGACTTGTGGACTTTG-AAAGGATGCCACTGACTTGTGGGCTT
*
977555 TGAAAGGATGCCACTGACTTA
65 TGAAAGGATGCCACTGACTTG
* * * * * *
977576 TGGGCTTTG-AAAGGGTGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGATTTGTGAGCTTT
1 TGGGCTTTGAAAAGGATGCCACTGACTTGTGGACTTTGAAAGGATGCCACTGACTTGTGGGCTTT
* *
977640 GAAATGGGTTGCCATTGACTTATG
66 GAAA--GGATGCCACTGAC-T-TG
* * ** *
977664 TGGGCTTTGAAATGGGTTGCCACCAACTTGTGTGGGA-TTTGAAAAGGATGCCACCGACTTGTGG
1 TGGGCTTTGAAA-AGGATGCCACTGAC-T-TGT-GGACTTTG-AAAGGATGCCACTGACTTGTGG
* *
977728 ACTTTGAAAGGATGCCACTAACTTG
61 GCTTTGAAAGGATGCCACTGACTTG
* * * * *
977753 TGGGCTTTGAAAGGGATGCCACTGATTTGT-GAGCTTTGAATGGGTTGCCACCGACTTGTGTGGG
1 TGGGCTTTGAAAAGGATGCCACTGACTTGTGGA-CTTTGAA-AGGATGCCACTGAC-T-TGTGGG
* **
977817 CTTTGAAATGGGCTGCCACCAACTTGTG
62 CTTTGAAA--GGATGCCACTGAC-T-TG
* * ** * * * *
977845 TGGGCTTTGAAATGGGTTGCCACCAACTTGTGTGGGCTTTCAAATGAGTTGCCACCGACTTGTGT
1 TGGGCTTTGAAA-AGGATGCCACTGAC-T-TGTGGACTTTGAAA-G-GATGCCACTGAC-T-TGT
* * *
977910 GGGCTTTTAAATGAGTTGCCACTAACTTGTG
59 GGGCTTTGAAA-G-GATGCCACTGAC-T-TG
* * * * * * * *
977941 TGGGCTTTCAAATGAGTTGCCACCGACTTGTGTGGGCTTTCAAATGATGCCACTAACTTGTGGGC
1 TGGGCTTTGAAAAG-GATGCCACTGAC-T-TGTGGACTTTGAAAGGATGCCACTGACTTGTGGGC
* *
978006 TTTGAAATGGGTTGCCACCGACTTGTG
63 TTTGAAA--GGATGCCACTGAC-T-TG
* * ** * * **
978033 TGGGCTTTGAAATGGGTTGCCACCAACTTATGTGGGCTTTGAAATGGGTTGCCACCAACTTATGT
1 TGGGCTTTGAAA-AGGATGCCACTGAC-T-TGTGGACTTTGAAA--GGATGCCACTGAC-T-TGT
* * **
978098 AGGCTTTGAAATGGGTTGCCACCAACTTGTG
59 GGGCTTTGAAA--GGATGCCACTGAC-T-TG
* * * * ** * * *
978129 TGGGCTTTCAAATGAGTTGCCAATGACTTGTGTGGGTTTTCAAATGAGTTGCCACCGACTTGTGT
1 TGGGCTTTGAAAAG-GATGCCACTGAC-T-TGTGGACTTTGAAA-G-GATGCCACTGAC-T-TGT
* * * **
978194 GGGTTTTCAAATGAGTTGCCACCAACTTGTG
59 GGGCTTTGAAA-G-GATGCCACTGAC-T-TG
* * * *
978225 TGGGCTTT-AAAAAGATGCCA-TCGACTTGTGGTCTTTGAAAAGGATGCCACTGACTTATGGACT
1 TGGGCTTTGAAAAGGATGCCACT-GACTTGTGGACTTTG-AAAGGATGCCACTGACTTGTGGGCT
* *
978288 TTGAAAGGGTGCCACTGATTTG
64 TTGAAAGGATGCCACTGACTTG
* * * * * * *
978310 TGGGCTTTG-AAAGGGTGCCACTAATTTATGGGCTTGGAAAAGGATGCCACTGACTTGTGGACTT
1 TGGGCTTTGAAAAGGATGCCACTGACTTGTGGACTTTG-AAAGGATGCCACTGACTTGTGGGCTT
978374 TGAAAGGATGCCACTGACTTG
65 TGAAAGGATGCCACTGACTTG
* * * * * * * * *
978395 TGGGCTTTG-AAAGGGTGCCACGGAGTTGTGAAC-TTAAAAGGGTGCCA-TAGAGTGGTGGACTT
1 TGGGCTTTGAAAAGGATGCCACTGACTTGTGGACTTTGAAAGGATGCCACT-GACTTGTGGGCTT
* *
978457 T-AAAAGAGTGCCACGGAGC-TG
65 TGAAAGGA-TGCCACTGA-CTTG
* * * * ** * * * *
978478 TGGAC-TT-AAAAGGGTGCCA-TGGAGTTATGGAC-TCAAAAGGGTGCCACGGAGTTGTGGACTT
1 TGGGCTTTGAAAAGGATGCCACT-GACTTGTGGACTTTGAAAGGATGCCACTGACTTGTGGGCTT
* *
978539 TGAAAAGG-TGCCACGGAGTTG
65 TG-AAAGGATGCCACTGACTTG
* * * * * * * *
978560 TGGACTTT--AAAGTG-TGCCACGGAGTTGTGGAC-TTAAAAGGATGCCACGGAGTTATGGACTT
1 TGGGCTTTGAAAAG-GATGCCACTGACTTGTGGACTTTGAAAGGATGCCACTGACTTGTGGGCTT
*
978621 TGAAAAGAAATGCCACTGA
65 TG-AAAG-GATGCCACTGA
978640 ATCGTGGACT
Statistics
Matches: 1166, Mismatches: 176, Indels: 121
0.80 0.12 0.08
Matches are distributed among these distances:
82 122 0.10
83 39 0.03
84 198 0.17
85 232 0.20
86 71 0.06
87 11 0.01
88 34 0.03
89 26 0.02
90 24 0.02
91 22 0.02
92 95 0.08
93 46 0.04
94 29 0.02
95 19 0.02
96 198 0.17
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.29
Consensus pattern (85 bp):
TGGGCTTTGAAAAGGATGCCACTGACTTGTGGACTTTGAAAGGATGCCACTGACTTGTGGGCTTT
GAAAGGATGCCACTGACTTG
Found at i:977359 original size:113 final size:114
Alignment explanation
Indices: 977153--978424 Score: 894
Period size: 113 Copynumber: 10.8 Consensus size: 114
977143 CTAACTTGTA
* * * *
977153 TGGGCTTTGAAAGGATGCCACTAACTCGTGGGCTTTGAAAAGTTGCCACTGACTTGTGGGCTTGG
1 TGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTG
* *
977218 AAAA-GATGCCTACTGACTTATGGGCTTTGAAAAGGATGCCACTGAGTTG
66 AAAAGGATGCC-ACTGACTTGTGGGCTTTGAAAAGGATGCCACTGACTTG
*** * * * * * *
977267 TGAATTTTGAAAGGATGCCACTGACTTAT-AGCTTTCAAAGGGTGCCACTGATTTGTGGGCTTGG
1 TGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTG
* * *
977331 AAAAGGATGCCACTGACTTGTGGACTTTGAAAA-GATGCAACTGACTTT
66 AAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGGATGCCACTGACTTG
* * * * * * *
977379 TGGGCTTTGAAAGGGTGCCACTGATTTATGGGC-TTGCAAAAGATGCCATTGACTTGTGGGCTTT
1 TGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTG-AAAGGGTGCCACTGACTTGTGGGCTTT
977443 GAAAA-GATGCCACTGACTTGTGGGCTTTG-AAAGGATGCCACTGACTTG
65 GAAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGGATGCCACTGACTTG
* * * ** *
977491 TGGGCTTTGAAAAGATGCCACCAACTTGTGGGCTTTGAAAAGGATGCCACCAACTTGTGGACTTT
1 TGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTG-AAAGGGTGCCACTGACTTGTGGGCTTT
* * *
977556 G-AAAGGATGCCACTGACTTATGGGCTTTG-AAAGGGTGCCACTAACTTG
65 GAAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGGATGCCACTGACTTG
* * * * *
977604 TGGGCTTTGAAAGGGTGCCACTGATTTGTGAGCTTTGAAATGGGTTGCCATTGACTTATGTGGGC
1 TGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAA-GGG-TGCCACTGAC-T-TGTGGGC
* * ** * *
977669 TTTGAAATGGGTTGCCACCAACTTGTGTGGGATTTGAAAAGGATGCCACCGACTTG
62 TTTGAAA-AGGATGCCACTGAC-T-TGTGGGCTTTGAAAAGGATGCCACTGACTTG
* * *
977725 TGGACTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGGATGCCACTGATTTGTGAGCTTT
1 TGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGG-TGCCACTGACTTGTGGGCTTT
** * * * * **
977790 GAATGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGCTGCCACCAACTTGTG
65 GAAAAGGATGCCACTGAC-T-TGTGGGCTTTGAAA-AGGATGCCACTGAC-T-TG
* * * * *
977845 TGGGCTTTGAAATGGGTTGCCACCAACTTGTGTGGGCTTTCAAATGAGTTGCCACCGACTTGTGT
1 TGGGCTTTGAAA--GGATGCCACTAAC-T-TGTGGGCTTTGAAA-G-GGTGCCACTGAC-T-TGT
* * * * * * * *
977910 GGGCTTTTAAATGAGTTGCCACTAACTTGTGTGGGCTTTCAAATGAGTTGCCACCGACTTGTG
58 GGGCTTTGAAAAG-GATGCCACTGAC-T-TGTGGGCTTTGAAAAG-GATGCCACTGAC-T-TG
* * *
977973 TGGGCTTTCAAATGATGCCACTAACTTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAA-GGG-TGCCACTGAC-T-TGTGGGC
* * ** * * **
978038 TTTGAAATGGGTTGCCACCAACTTATGTGGGCTTTGAAATGGGTTGCCACCAACTTATG
62 TTTGAAA-AGGATGCCACTGAC-T-TGTGGGCTTTGAAA-AGGATGCCACTGAC-T-TG
* * * * * *
978097 TAGGCTTTGAAATGGGTTGCCACCAACTTGTGTGGGCTTTCAAATGAGTTGCCAATGACTTGTGT
1 TGGGCTTTGAAA--GGATGCCACTAAC-T-TGTGGGCTTTGAAA-G-GGTGCCACTGAC-T-TGT
* * * * * * * * * **
978162 GGGTTTTCAAATGAGTTGCCACCGACTTGTGTGGGTTTTCAAATGAGTTGCCACCAACTTGTG
58 GGGCTTTGAAAAG-GATGCCACTGAC-T-TGTGGGCTTTGAAAAG-GATGCCACTGAC-T-TG
* * * * * * *
978225 TGGGCTTTAAAAAGATGCCA-TCGACTTGTGGTCTTTGAAAAGGATGCCACTGACTTATGGACTT
1 TGGGCTTTGAAAGGATGCCACT-AACTTGTGGGCTTTG-AAAGGGTGCCACTGACTTGTGGGCTT
* * * * * *
978289 TG-AAAGGGTGCCACTGATTTGTGGGCTTTG-AAAGGGTGCCACTAATTTA
64 TGAAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGGATGCCACTGACTTG
* * * *
978338 TGGGCTTGGAAAAGGATGCCACTGACTTGTGGACTTTGAAAGGATGCCACTGACTTGTGGGCTTT
1 TGGGCTTTG-AAAGGATGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTT
* * *
978403 G-AAAGGGTGCCACGGAGTTGTG
65 GAAAAGGATGCCACTGACTTGTG
978425 AACTTAAAAG
Statistics
Matches: 953, Mismatches: 163, Indels: 85
0.79 0.14 0.07
Matches are distributed among these distances:
111 3 0.00
112 107 0.11
113 235 0.25
114 61 0.06
115 11 0.01
116 13 0.01
117 40 0.04
118 34 0.04
119 12 0.01
120 36 0.04
121 58 0.06
122 12 0.01
123 12 0.01
124 115 0.12
125 16 0.02
126 30 0.03
127 16 0.02
128 141 0.15
129 1 0.00
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.30
Consensus pattern (114 bp):
TGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTG
AAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGGATGCCACTGACTTG
Found at i:977671 original size:32 final size:32
Alignment explanation
Indices: 977433--978424 Score: 730
Period size: 32 Copynumber: 33.1 Consensus size: 32
977423 GCCATTGACT
* * *
977433 TGTGGGCTTTGAAA--AGATGCCACTGAC-T-
1 TGTGGGCTTTGAAATGGGTTGCCACCGACTTG
* *
977461 TGTGGGCTTTGAAA--GGATGCCACTGAC-T-
1 TGTGGGCTTTGAAATGGGTTGCCACCGACTTG
* * *
977489 TGTGGGCTTTGAAA--AGATGCCACCAAC-T-
1 TGTGGGCTTTGAAATGGGTTGCCACCGACTTG
* * *
977517 TGTGGGCTTTGAAA-AGGATGCCACCAAC-T-
1 TGTGGGCTTTGAAATGGGTTGCCACCGACTTG
* * *
977546 TGTGGACTTTGAAA--GGATGCCACTGAC-T-
1 TGTGGGCTTTGAAATGGGTTGCCACCGACTTG
* **
977574 TATGGGCTTTGAAA-GGG-TGCCACTAAC-T-
1 TGTGGGCTTTGAAATGGGTTGCCACCGACTTG
*
977602 TGTGGGCTTTGAAA-GGG-TGCCACTGA-TT-
1 TGTGGGCTTTGAAATGGGTTGCCACCGACTTG
* ** *
977630 TGTGAGCTTTGAAATGGGTTGCCATTGACTTA
1 TGTGGGCTTTGAAATGGGTTGCCACCGACTTG
*
977662 TGTGGGCTTTGAAATGGGTTGCCACCAACTTG
1 TGTGGGCTTTGAAATGGGTTGCCACCGACTTG
* * *
977694 TGTGGGATTTGAAA-AGGATGCCACCGAC-T-
1 TGTGGGCTTTGAAATGGGTTGCCACCGACTTG
* * **
977723 TGTGGACTTTGAAA--GGATGCCACTAAC-T-
1 TGTGGGCTTTGAAATGGGTTGCCACCGACTTG
* *
977751 TGTGGGCTTTGAAA-GGGATGCCACTGA-TT-
1 TGTGGGCTTTGAAATGGGTTGCCACCGACTTG
*
977780 TGTGAGCTTTG-AATGGGTTGCCACCGACTTG
1 TGTGGGCTTTGAAATGGGTTGCCACCGACTTG
* *
977811 TGTGGGCTTTGAAATGGGCTGCCACCAACTTG
1 TGTGGGCTTTGAAATGGGTTGCCACCGACTTG
*
977843 TGTGGGCTTTGAAATGGGTTGCCACCAACTTG
1 TGTGGGCTTTGAAATGGGTTGCCACCGACTTG
* *
977875 TGTGGGCTTTCAAATGAGTTGCCACCGACTTG
1 TGTGGGCTTTGAAATGGGTTGCCACCGACTTG
* * **
977907 TGTGGGCTTTTAAATGAGTTGCCACTAACTTG
1 TGTGGGCTTTGAAATGGGTTGCCACCGACTTG
* *
977939 TGTGGGCTTTCAAATGAGTTGCCACCGACTTG
1 TGTGGGCTTTGAAATGGGTTGCCACCGACTTG
* * **
977971 TGTGGGCTTTCAAAT--GATGCCACTAAC-T-
1 TGTGGGCTTTGAAATGGGTTGCCACCGACTTG
977999 TGTGGGCTTTGAAATGGGTTGCCACCGACTTG
1 TGTGGGCTTTGAAATGGGTTGCCACCGACTTG
* *
978031 TGTGGGCTTTGAAATGGGTTGCCACCAACTTA
1 TGTGGGCTTTGAAATGGGTTGCCACCGACTTG
* *
978063 TGTGGGCTTTGAAATGGGTTGCCACCAACTTA
1 TGTGGGCTTTGAAATGGGTTGCCACCGACTTG
* *
978095 TGTAGGCTTTGAAATGGGTTGCCACCAACTTG
1 TGTGGGCTTTGAAATGGGTTGCCACCGACTTG
* * **
978127 TGTGGGCTTTCAAATGAGTTGCCAATGACTTG
1 TGTGGGCTTTGAAATGGGTTGCCACCGACTTG
* * *
978159 TGTGGGTTTTCAAATGAGTTGCCACCGACTTG
1 TGTGGGCTTTGAAATGGGTTGCCACCGACTTG
* * * *
978191 TGTGGGTTTTCAAATGAGTTGCCACCAACTTG
1 TGTGGGCTTTGAAATGGGTTGCCACCGACTTG
** * *
978223 TGTGGGCTTT-AAA-AAGATGCCATCGAC-T-
1 TGTGGGCTTTGAAATGGGTTGCCACCGACTTG
* * * *
978251 TGTGGTCTTTGAAA-AGGATGCCACTGAC-T-
1 TGTGGGCTTTGAAATGGGTTGCCACCGACTTG
* * *
978280 TATGGACTTTGAAA-GGG-TGCCACTGA-TT-
1 TGTGGGCTTTGAAATGGGTTGCCACCGACTTG
* *
978308 TGTGGGCTTTGAAA-GGG-TGCCA-CTAATT-
1 TGTGGGCTTTGAAATGGGTTGCCACCGACTTG
* * * * *
978336 TATGGGCTTGGAAA-AGGATGCCACTGAC-T-
1 TGTGGGCTTTGAAATGGGTTGCCACCGACTTG
* * *
978365 TGTGGACTTTGAAA--GGATGCCACTGAC-T-
1 TGTGGGCTTTGAAATGGGTTGCCACCGACTTG
* *
978393 TGTGGGCTTTGAAA-GGG-TGCCACGGAGTTG
1 TGTGGGCTTTGAAATGGGTTGCCACCGACTTG
978423 TG
1 TG
978425 AACTTAAAAG
Statistics
Matches: 844, Mismatches: 95, Indels: 48
0.86 0.10 0.05
Matches are distributed among these distances:
27 1 0.00
28 269 0.32
29 127 0.15
30 42 0.05
31 27 0.03
32 378 0.45
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (32 bp):
TGTGGGCTTTGAAATGGGTTGCCACCGACTTG
Found at i:977868 original size:64 final size:60
Alignment explanation
Indices: 977153--978415 Score: 817
Period size: 64 Copynumber: 21.4 Consensus size: 60
977143 CTAACTTGTA
** * * *
977153 TGGGCTTTGAAA-GGATGCCACTAAC-TCGTGGGCTTTGAAA-AGTTGCCACTGAC-TTG
1 TGGGCTTTGAAAGGGATGCCACCGACTTTGTGGGCTTTGAAAGGGTTGCCACCGACTTTG
* * * * * * * *
977209 TGGGCTTGGAAA-AGATGCCTACTGAC-TTATGGGCTTTGAAAAGGATGCCACTGA-GTTG
1 TGGGCTTTGAAAGGGATGCC-ACCGACTTTGTGGGCTTTGAAAGGGTTGCCACCGACTTTG
*** * * * * *
977267 TGAATTTTGAAA-GGATGCCACTGAC-TTAT-AGCTTTCAAAGGG-TGCCACTGA-TTTG
1 TGGGCTTTGAAAGGGATGCCACCGACTTTGTGGGCTTTGAAAGGGTTGCCACCGACTTTG
* * * * * * * *
977322 TGGGCTTGGAAAAGGATGCCACTGAC-TTGTGGACTTTGAAA-AGATGCAACTGACTTT-
1 TGGGCTTTGAAAGGGATGCCACCGACTTTGTGGGCTTTGAAAGGGTTGCCACCGACTTTG
* * * * **
977379 TGGGCTTTGAAAGGG-TGCCACTGA-TTTATGGGC-TTGCAAA-AGATGCCATTGAC-TTG
1 TGGGCTTTGAAAGGGATGCCACCGACTTTGTGGGCTTTG-AAAGGGTTGCCACCGACTTTG
* * * *
977435 TGGGCTTTGAAA-AGATGCCACTGAC-TTGTGGGCTTTGAAA-GGATGCCACTGAC-TTG
1 TGGGCTTTGAAAGGGATGCCACCGACTTTGTGGGCTTTGAAAGGGTTGCCACCGACTTTG
* * * * *
977491 TGGGCTTTGAAA-AGATGCCACCAAC-TTGTGGGCTTTGAAAAGGATGCCACCAAC-TTG
1 TGGGCTTTGAAAGGGATGCCACCGACTTTGTGGGCTTTGAAAGGGTTGCCACCGACTTTG
* * * **
977548 TGGACTTTGAAA-GGATGCCACTGAC-TTATGGGCTTTGAAAGGG-TGCCACTAAC-TTG
1 TGGGCTTTGAAAGGGATGCCACCGACTTTGTGGGCTTTGAAAGGGTTGCCACCGACTTTG
* * **
977604 TGGGCTTTGAAAGGG-TGCCACTGA-TTTGTGAGCTTTGAAATGGGTTGCCATTGACTTATG
1 TGGGCTTTGAAAGGGATGCCACCGACTTTGTGGGCTTTGAAA-GGGTTGCCACCGACTT-TG
* * * * *
977664 TGGGCTTTGAAATGGGTTGCCACCAACTTGTGTGGGATTTGAAAAGGATGCCACCGAC-TTG
1 TGGGCTTTGAAA-GGGATGCCACCGACTT-TGTGGGCTTTGAAAGGGTTGCCACCGACTTTG
* ** * *
977725 TGGACTTTGAAA-GGATGCCACTAAC-TTGTGGGCTTTGAAAGGGATGCCACTGA-TTTG
1 TGGGCTTTGAAAGGGATGCCACCGACTTTGTGGGCTTTGAAAGGGTTGCCACCGACTTTG
* * * * *
977782 TGAGCTTTGAATGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGCTGCCACCAACTTGTG
1 TGGGCTTTGAAAGGGATGCCACCGACTT-TGTGGGCTTTGAAA-GGGTTGCCACCGACTT-TG
* * * *
977845 TGGGCTTTGAAATGGGTTGCCACCAACTTGTGTGGGCTTTCAAATGAGTTGCCACCGACTTGTG
1 TGGGCTTTGAAA-GGGATGCCACCGACTT-TGTGGGCTTTGAAA-GGGTTGCCACCGACTT-TG
* * * ** * *
977909 TGGGCTTTTAAATGAGTTGCCACTAACTTGTGTGGGCTTTCAAATGAGTTGCCACCGACTTGTG
1 TGGGCTTTGAAA-GGGATGCCACCGACTT-TGTGGGCTTTGAAA-GGGTTGCCACCGACTT-TG
* * **
977973 TGGGCTTTCAAA-TGATGCCACTAAC-TTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTG
1 TGGGCTTTGAAAGGGATGCCACCGACTTTGTGGGCTTTGAAA-GGGTTGCCACCGACTT-TG
* * *
978033 TGGGCTTTGAAATGGGTTGCCACCAACTTATGTGGGCTTTGAAATGGGTTGCCACCAACTTATG
1 TGGGCTTTGAAA-GGGATGCCACCGACTT-TGTGGGCTTTGAAA-GGGTTGCCACCGACTT-TG
* * * * * **
978097 TAGGCTTTGAAATGGGTTGCCACCAACTTGTGTGGGCTTTCAAATGAGTTGCCAATGACTTGTG
1 TGGGCTTTGAAA-GGGATGCCACCGACTT-TGTGGGCTTTGAAA-GGGTTGCCACCGACTT-TG
* * * * * * * *
978161 TGGGTTTTCAAATGAGTTGCCACCGACTTGTGTGGGTTTTCAAATGAGTTGCCACCAACTTGTG
1 TGGGCTTTGAAA-GGGATGCCACCGACTT-TGTGGGCTTTGAAA-GGGTTGCCACCGACTT-TG
** * * * * * *
978225 TGGGCTTT-AAAAAGATGCCATCGAC-TTGTGGTCTTTGAAAAGGATGCCACTGAC-TTA
1 TGGGCTTTGAAAGGGATGCCACCGACTTTGTGGGCTTTGAAAGGGTTGCCACCGACTTTG
* * * * *
978282 TGGACTTTGAAAGGG-TGCCACTGA-TTTGTGGGCTTTGAAAGGG-TGCCA-CTAATTTA
1 TGGGCTTTGAAAGGGATGCCACCGACTTTGTGGGCTTTGAAAGGGTTGCCACCGACTTTG
* * * * * *
978338 TGGGCTTGGAAAAGGATGCCACTGAC-TTGTGGACTTTGAAA-GGATGCCACTGAC-TTG
1 TGGGCTTTGAAAGGGATGCCACCGACTTTGTGGGCTTTGAAAGGGTTGCCACCGACTTTG
978395 TGGGCTTTGAAAGGG-TGCCAC
1 TGGGCTTTGAAAGGGATGCCAC
978416 GGAGTTGTGA
Statistics
Matches: 1018, Mismatches: 146, Indels: 86
0.81 0.12 0.07
Matches are distributed among these distances:
55 27 0.03
56 229 0.22
57 225 0.22
58 55 0.05
59 22 0.02
60 82 0.08
61 28 0.03
62 42 0.04
63 28 0.03
64 280 0.28
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.30
Consensus pattern (60 bp):
TGGGCTTTGAAAGGGATGCCACCGACTTTGTGGGCTTTGAAAGGGTTGCCACCGACTTTG
Found at i:978056 original size:220 final size:213
Alignment explanation
Indices: 977319--978415 Score: 863
Period size: 220 Copynumber: 5.2 Consensus size: 213
977309 TGCCACTGAT
** * ** * * * * * *
977319 TTGTGGGCTTGGAAAAGGATGCCACTGACTTGTGGACTTTGAAAAGATGCAACTGACTTTTGGGC
1 TTGTGGGCTTTCAAATGGATGCCACCAACTTGTGGGCTTTCAAAGGATGCCACTAACTTGTGGGC
* * * * ***
977384 TTTGAAA-GGG-TGCCACTGA-TT-TATGGGC-TTGCAAA-AGATGCCATTGAC-TTGTGGGCTT
66 TTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTG-AAATGGGTGCCACCAACTTTGTGGGCTT
* * ** * **
977442 TGAAA--AGATGCCACTGAC-T-TGTGGGCTTTGAAA--GGATGCCACTGAC-T-TGTGGGCTTT
130 TGAAATGGGTTGCCACCAACTTATGTGGGCTTTGAAATGGGTTGCCACCAACTTGTGTGGGCTTT
977499 GAAA--AGATGCCACCAAC
195 GAAATGAGATGCCACCAAC
* * * * * *
977516 TTGTGGGCTTTGAAAAGGATGCCACCAACTTGTGGACTTTGAAAGGATGCCACTGACTTATGGGC
1 TTGTGGGCTTTCAAATGGATGCCACCAACTTGTGGGCTTTCAAAGGATGCCACTAACTTGTGGGC
** ** *
977581 TTTGAAA-GGG-TGCCACTAAC-T-TGTGGGCTTTGAAA-GGGTGCCACTGA-TTTGTGAGCTTT
66 TTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTGCCACCAACTTTGTGGGCTTT
*** *
977640 GAAATGGGTTGCCATTGACTTATGTGGGCTTTGAAATGGGTTGCCACCAACTTGTGTGGGATTTG
131 GAAATGGGTTGCCACCAACTTATGTGGGCTTTGAAATGGGTTGCCACCAACTTGTGTGGGCTTTG
* *
977705 AAAAG-GATGCCACCGAC
196 AAATGAGATGCCACCAAC
* * * * * * *
977722 TTGTGGACTTTGAAA-GGATGCCACTAACTTGTGGGCTTTGAAAGGGATGCCACTGATTTGTGAG
1 TTGTGGGCTTTCAAATGGATGCCACCAACTTGTGGGCTTTCAAA-GGATGCCACTAACTTGTGGG
977786 CTTTG-AATGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGCTGCCACCAACTTGTGTGGGC
65 CTTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGG-TGCCACCAACTT-TGTGGGC
* * * *
977850 TTTGAAATGGGTTGCCACCAACTTGTGTGGGCTTTCAAATGAGTTGCCACCGACTTGTGTGGGCT
128 TTTGAAATGGGTTGCCACCAACTTATGTGGGCTTTGAAATGGGTTGCCACCAACTTGTGTGGGCT
* * *
977915 TTTAAATGAGTTGCCACTAAC
193 TTGAAATGAGATGCCACCAAC
* * *
977936 TTGTGTGGGCTTTCAAATGAGTTGCCACCGACTTGTGTGGGCTTTCAAATGATGCCACTAACTTG
1 -T-TGTGGGCTTTCAAATG-GATGCCACCAAC-T-TGTGGGCTTTCAAAGGATGCCACTAACTTG
978001 TGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCAACTTATGT
61 TGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGG-TGCCACCAACTT-TGT
*
978066 GGGCTTTGAAATGGGTTGCCACCAACTTATGTAGGCTTTGAAATGGGTTGCCACCAACTTGTGTG
124 GGGCTTTGAAATGGGTTGCCACCAACTTATGTGGGCTTTGAAATGGGTTGCCACCAACTTGTGTG
* * ***
978131 GGCTTTCAAATGAGTTGCCAATGAC
189 GGCTTTGAAATGAGATGCCACCAAC
* * * * * *
978156 TTGTGTGGGTTTTCAAATGAGTTGCCACCGACTTGTGTGGGTTTTCAAATGAGTTGCCACCAACT
1 -T-TGTGGGCTTTCAAATG-GATGCCACCAAC-T-TGTGGGCTTTCAAA-G-GATGCCACTAAC-
** * * * * * **
978221 TGTGTGGGCTTT-AAA-AAGATGCCATCGAC-T-TGTGGTCTTTGAAAAGGATGCCACTGAC-TT
58 T-TGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTGCCACCAACTTT
* * ** * *
978281 ATGGACTTTGAAA-GGG-TGCCACTGA-TT-TGTGGGCTTTGAAA-GGG-TGCCACTAA-TT-TA
122 GTGGGCTTTGAAATGGGTTGCCACCAACTTATGTGGGCTTTGAAATGGGTTGCCACCAACTTGTG
* * **
978338 TGGGCTTGGAAAAG-GATGCCACTGAC
187 TGGGCTTTGAAATGAGATGCCACCAAC
* * ** * *
978364 TTGTGGACTTTGAAA-GGATGCCACTGACTTGTGGGCTTTGAAAGGGTGCCAC
1 TTGTGGGCTTTCAAATGGATGCCACCAACTTGTGGGCTTTCAAAGGATGCCAC
978416 GGAGTTGTGA
Statistics
Matches: 768, Mismatches: 98, Indels: 65
0.82 0.11 0.07
Matches are distributed among these distances:
197 110 0.14
198 3 0.00
199 10 0.01
200 8 0.01
201 15 0.02
202 12 0.02
203 11 0.01
204 11 0.01
205 42 0.05
206 61 0.08
207 9 0.01
208 11 0.01
209 26 0.03
210 5 0.01
211 15 0.02
212 5 0.01
213 82 0.11
214 11 0.01
215 8 0.01
216 15 0.02
217 13 0.02
218 10 0.01
219 30 0.04
220 210 0.27
221 1 0.00
222 20 0.03
223 4 0.01
224 10 0.01
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.30
Consensus pattern (213 bp):
TTGTGGGCTTTCAAATGGATGCCACCAACTTGTGGGCTTTCAAAGGATGCCACTAACTTGTGGGC
TTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTGCCACCAACTTTGTGGGCTTT
GAAATGGGTTGCCACCAACTTATGTGGGCTTTGAAATGGGTTGCCACCAACTTGTGTGGGCTTTG
AAATGAGATGCCACCAAC
Found at i:978447 original size:27 final size:27
Alignment explanation
Indices: 978262--978620 Score: 306
Period size: 28 Copynumber: 13.0 Consensus size: 27
978252 GTGGTCTTTG
* * * *
978262 AAAAGGATGCCACTGACTTATGGACTTT
1 AAAAGGGTGCCACGGAGTTGTGGAC-TT
* * * *
978290 GAAAGGGTGCCACTGATTTGTGGGCTTT
1 AAAAGGGTGCCACGGAGTTGTGGAC-TT
* ** * * *
978318 GAAAGGGTGCCACTAATTTATGGGCTT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
* * *
978345 GGAAAAGGATGCCACTGACTTGTGGACTTT
1 --AAAAGGGTGCCACGGAGTTGTGGAC-TT
* * * * *
978375 GAAAGGATGCCACTGACTTGTGGGCTTT
1 AAAAGGGTGCCACGGAGTTGTGGAC-TT
* *
978403 GAAAGGGTGCCACGGAGTTGTGAACTT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
** *
978430 AAAAGGGTGCCATAGAGTGGTGGACTTT
1 AAAAGGGTGCCACGGAGTTGTGGAC-TT
* *
978458 AAAAGAGTGCCACGGAGCTGTGGACTT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
* * *
978485 AAAAGGGTGCCATGGAGTTATGGACTC
1 AAAAGGGTGCCACGGAGTTGTGGACTT
978512 AAAAGGGTGCCACGGAGTTGTGGACTTT
1 AAAAGGGTGCCACGGAGTTGTGGAC-TT
978540 GAAAA-GGTGCCACGGAGTTGTGGACTT
1 -AAAAGGGTGCCACGGAGTTGTGGACTT
* *
978567 TAAAGTGTGCCACGGAGTTGTGGACTT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
* *
978594 AAAAGGATGCCACGGAGTTATGGACTT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
978621 TGAAAAGAAA
Statistics
Matches: 280, Mismatches: 44, Indels: 15
0.83 0.13 0.04
Matches are distributed among these distances:
26 3 0.01
27 117 0.42
28 135 0.48
29 23 0.08
30 2 0.01
ACGTcount: A:0.26, C:0.15, G:0.33, T:0.26
Consensus pattern (27 bp):
AAAAGGGTGCCACGGAGTTGTGGACTT
Found at i:978468 original size:55 final size:55
Alignment explanation
Indices: 978223--978628 Score: 311
Period size: 55 Copynumber: 7.3 Consensus size: 55
978213 CACCAACTTG
* * * * * *
978223 TGTGGGCTTTAAAA-AGATGCCATC-GACTTGTGGTCTTTGAAAAGGATGCCACTGACT
1 TGTGGACTTTAAAAGAG-TGCCA-CGGAGTTGTGGAC-TT-AAAAGGGTGCCACGGAGT
* * * * * * * ** *
978280 TATGGACTTTGAAAGGGTGCCACTGATTTGTGGGCTTTGAAAGGGTGCCACTAATT
1 TGTGGACTTTAAAAGAGTGCCACGGAGTTGTGGAC-TTAAAAGGGTGCCACGGAGT
* * * * * * * * *
978336 TATGGGCTTGGAAAAG-GATGCCACTGACTTGTGGACTTTGAAAGGATGCCACTGACT
1 TGTGGACTT-TAAAAGAG-TGCCACGGAGTTGTGGAC-TTAAAAGGGTGCCACGGAGT
* * * * **
978393 TGTGGGCTTTGAAAGGGTGCCACGGAGTTGTGAACTTAAAAGGGTGCCATAGAGT
1 TGTGGACTTTAAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGT
* * *
978448 GGTGGACTTTAAAAGAGTGCCACGGAGCTGTGGACTTAAAAGGGTGCCATGGAGT
1 TGTGGACTTTAAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGT
* * *
978503 TATGGAC-TCAAAAGGGTGCCACGGAGTTGTGGACTTTGAAAA-GGTGCCACGGAGT
1 TGTGGACTTTAAAAGAGTGCCACGGAGTTGTGGAC-TT-AAAAGGGTGCCACGGAGT
* *
978558 TGTGGACTTT-AAAGTGTGCCACGGAGTTGTGGACTTAAAAGGATGCCACGGAGT
1 TGTGGACTTTAAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGT
*
978612 TATGGACTTTGAAAAGA
1 TGTGGACTTT-AAAAGA
978629 AATGCCACTG
Statistics
Matches: 290, Mismatches: 48, Indels: 23
0.80 0.13 0.06
Matches are distributed among these distances:
53 4 0.01
54 47 0.16
55 111 0.38
56 52 0.18
57 75 0.26
58 1 0.00
ACGTcount: A:0.27, C:0.15, G:0.32, T:0.26
Consensus pattern (55 bp):
TGTGGACTTTAAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGT
Found at i:978519 original size:82 final size:83
Alignment explanation
Indices: 978262--978628 Score: 348
Period size: 82 Copynumber: 4.4 Consensus size: 83
978252 GTGGTCTTTG
* * * * * * ** * *
978262 AAAAGGATGCCACTGACTTATGGACTTTG-AAAGGGTGCCACTGATTTGTGGGCTTTGAAAGGGT
1 AAAAGGGTGCCACGGAGTTGTGGACTTTGAAAAGAGTGCCACGGAGCTGTGGAC-TTAAAAGGGT
** * * *
978326 GCCACTAATTTATGGGCTT
65 GCCACGGAGTTGTGGACTT
* * * * * * *
978345 GGAAAAGGATGCCACTGACTTGTGGACTTTGAAAGGA-TGCCACTGA-CTTGTGGGCTTTGAAAG
1 --AAAAGGGTGCCACGGAGTTGTGGACTTTGAAAAGAGTGCCACGGAGC-TGTGGAC-TTAAAAG
*
978408 GGTGCCACGGAGTTGTGAACTT
62 GGTGCCACGGAGTTGTGGACTT
** *
978430 AAAAGGGTGCCATAGAGTGGTGGACTTT-AAAAGAGTGCCACGGAGCTGTGGACTTAAAAGGGTG
1 AAAAGGGTGCCACGGAGTTGTGGACTTTGAAAAGAGTGCCACGGAGCTGTGGACTTAAAAGGGTG
* * *
978494 CCATGGAGTTATGGACTC
66 CCACGGAGTTGTGGACTT
* * *
978512 AAAAGGGTGCCACGGAGTTGTGGACTTTGAAAAG-GTGCCACGGAGTTGTGGACTTTAAAGTGTG
1 AAAAGGGTGCCACGGAGTTGTGGACTTTGAAAAGAGTGCCACGGAGCTGTGGACTTAAAAGGGTG
978576 CCACGGAGTTGTGGACTT
66 CCACGGAGTTGTGGACTT
* *
978594 AAAAGGATGCCACGGAGTTATGGACTTTGAAAAGA
1 AAAAGGGTGCCACGGAGTTGTGGACTTTGAAAAGA
978629 AATGCCACTG
Statistics
Matches: 242, Mismatches: 34, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
82 128 0.53
83 42 0.17
84 1 0.00
85 68 0.28
86 3 0.01
ACGTcount: A:0.27, C:0.15, G:0.32, T:0.25
Consensus pattern (83 bp):
AAAAGGGTGCCACGGAGTTGTGGACTTTGAAAAGAGTGCCACGGAGCTGTGGACTTAAAAGGGTG
CCACGGAGTTGTGGACTT
Found at i:979621 original size:20 final size:20
Alignment explanation
Indices: 979598--979670 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
979588 ACAATTCAAA
979598 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
979618 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
979639 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
979659 GTATCGATACAT
1 GTATCGATACAT
979671 AAAAAAGTTG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:979642 original size:21 final size:21
Alignment explanation
Indices: 979616--979691 Score: 91
Period size: 21 Copynumber: 3.7 Consensus size: 21
979606 ACATGTTGCA
979616 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
979637 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
*
979657 ATGTATCGATACATAAAAAAG
1 ATGTATCGATACATGAAAAAG
*
979678 TTGTATCGATACAT
1 ATGTATCGATACAT
979692 TTCTTGGCAG
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
20 15 0.34
21 29 0.66
ACGTcount: A:0.41, C:0.12, G:0.17, T:0.30
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:979649 original size:41 final size:41
Alignment explanation
Indices: 979598--979691 Score: 170
Period size: 41 Copynumber: 2.3 Consensus size: 41
979588 ACAATTCAAA
*
979598 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
*
979639 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGTT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
979680 GTATCGATACAT
1 GTATCGATACAT
979692 TTCTTGGCAG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.31
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:979748 original size:13 final size:13
Alignment explanation
Indices: 979730--979755 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
979720 TACAGCAAGT
979730 ATGTATCGATACA
1 ATGTATCGATACA
979743 ATGTATCGATACA
1 ATGTATCGATACA
979756 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:983838 original size:15 final size:15
Alignment explanation
Indices: 983818--983848 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
983808 TAAAAATGTC
*
983818 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
983833 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
983848 C
1 C
983849 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:985913 original size:20 final size:21
Alignment explanation
Indices: 985834--985912 Score: 72
Period size: 20 Copynumber: 3.7 Consensus size: 21
985824 AATGTCCAAA
*
985834 ATGTATCGATACATGTTTT-T
1 ATGTATCGATACATCTTTTCT
* *
985854 GTGTATCGATACATCTGGAAATTCT
1 ATGTATCGATACATCT----TTTCT
985879 ATGTATCGATACAT-TTTTCT
1 ATGTATCGATACATCTTTTCT
*
985899 TTGTATCGATACAT
1 ATGTATCGATACAT
985913 TGTATCGATA
Statistics
Matches: 48, Mismatches: 6, Indels: 10
0.75 0.09 0.16
Matches are distributed among these distances:
20 31 0.65
24 3 0.06
25 14 0.29
ACGTcount: A:0.27, C:0.14, G:0.15, T:0.44
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTCT
Found at i:985917 original size:13 final size:13
Alignment explanation
Indices: 985899--985937 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
985889 ACATTTTTCT
985899 TTGTATCGATACA
1 TTGTATCGATACA
985912 TTGTATCGATACA
1 TTGTATCGATACA
*
985925 CTGTATCGATACA
1 TTGTATCGATACA
985938 GGGTGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:988403 original size:20 final size:20
Alignment explanation
Indices: 988380--988452 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
988370 ACAATTCAAA
988380 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
988400 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
988421 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
988441 GTATCGATACAT
1 GTATCGATACAT
988453 AAAAAAGTTG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:988424 original size:21 final size:21
Alignment explanation
Indices: 988398--988473 Score: 91
Period size: 21 Copynumber: 3.7 Consensus size: 21
988388 ACATGTTGCA
988398 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
988419 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
*
988439 ATGTATCGATACATAAAAAAG
1 ATGTATCGATACATGAAAAAG
*
988460 TTGTATCGATACAT
1 ATGTATCGATACAT
988474 TTCTTGGCAG
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
20 15 0.34
21 29 0.66
ACGTcount: A:0.41, C:0.12, G:0.17, T:0.30
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:988431 original size:41 final size:41
Alignment explanation
Indices: 988380--988473 Score: 170
Period size: 41 Copynumber: 2.3 Consensus size: 41
988370 ACAATTCAAA
*
988380 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
*
988421 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGTT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
988462 GTATCGATACAT
1 GTATCGATACAT
988474 TTCTTGGCAG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.31
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:988530 original size:13 final size:13
Alignment explanation
Indices: 988512--988537 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
988502 TACAGCAAGT
988512 ATGTATCGATACA
1 ATGTATCGATACA
988525 ATGTATCGATACA
1 ATGTATCGATACA
988538 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:989875 original size:19 final size:18
Alignment explanation
Indices: 989827--989876 Score: 55
Period size: 19 Copynumber: 2.7 Consensus size: 18
989817 TTTTTCTGGA
* *
989827 TTTTTGTTGTTCCCTTTT
1 TTTTTGTTTTTCACTTTT
*
989845 TATTTTGCTTTTGCACTTTT
1 T-TTTTG-TTTTTCACTTTT
989865 TTTTTGTTTTTC
1 TTTTTGTTTTTC
989877 TTTTCATATT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
18 6 0.23
19 10 0.38
20 10 0.38
ACGTcount: A:0.04, C:0.14, G:0.10, T:0.72
Consensus pattern (18 bp):
TTTTTGTTTTTCACTTTT
Found at i:996989 original size:71 final size:71
Alignment explanation
Indices: 996898--997053 Score: 240
Period size: 71 Copynumber: 2.2 Consensus size: 71
996888 TTTTAACTAG
* * * * *
996898 ATGTATTGATACATTTAAAAATGTATCGATACATCTAGGAAAAAAGACGGAATGTATTGATACAT
1 ATGTATCGATACATTAAAAAATGTATCGATACAACTAGGAAAAAAGACAGAATGTATCGATACAT
996963 TCATAC
66 TCATAC
* * *
996969 ATGTATGGATACATTAAAAAATGTATCGATACAACTGGGTAAAAAGACAGAATGTATCGATACAT
1 ATGTATCGATACATTAAAAAATGTATCGATACAACTAGGAAAAAAGACAGAATGTATCGATACAT
997034 TCATAC
66 TCATAC
997040 ATGTATCGATACAT
1 ATGTATCGATACAT
997054 CTGGGTAAAA
Statistics
Matches: 77, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
71 77 1.00
ACGTcount: A:0.42, C:0.12, G:0.16, T:0.29
Consensus pattern (71 bp):
ATGTATCGATACATTAAAAAATGTATCGATACAACTAGGAAAAAAGACAGAATGTATCGATACAT
TCATAC
Found at i:996992 original size:20 final size:20
Alignment explanation
Indices: 996948--997001 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
996938 AAAAAGACGG
* * *
996948 AATGTATTGATACATTCATA
1 AATGTATCGATACATTAAAA
* *
996968 CATGTATGGATACATTAAAA
1 AATGTATCGATACATTAAAA
996988 AATGTATCGATACA
1 AATGTATCGATACA
997002 ACTGGGTAAA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.43, C:0.11, G:0.13, T:0.33
Consensus pattern (20 bp):
AATGTATCGATACATTAAAA
Found at i:997024 original size:51 final size:51
Alignment explanation
Indices: 996969--997104 Score: 218
Period size: 51 Copynumber: 2.7 Consensus size: 51
996959 ACATTCATAC
* * * *
996969 ATGTATGGATACATTAAAAAATGTATCGATACAACTGGGTAAAAAGACAGA
1 ATGTATCGATACATTCATACATGTATCGATACAACTGGGTAAAAAGACAGA
*
997020 ATGTATCGATACATTCATACATGTATCGATACATCTGGGTAAAAAGACAGA
1 ATGTATCGATACATTCATACATGTATCGATACAACTGGGTAAAAAGACAGA
*
997071 ATGTATCGATACAATCATACATGTATCGATACAA
1 ATGTATCGATACATTCATACATGTATCGATACAA
997105 TCATACATGT
Statistics
Matches: 78, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 78 1.00
ACGTcount: A:0.43, C:0.14, G:0.17, T:0.26
Consensus pattern (51 bp):
ATGTATCGATACATTCATACATGTATCGATACAACTGGGTAAAAAGACAGA
Found at i:997115 original size:122 final size:122
Alignment explanation
Indices: 996898--997124 Score: 328
Period size: 122 Copynumber: 1.9 Consensus size: 122
996888 TTTTAACTAG
* * * * *
996898 ATGTATTGATACATTTAAAAATGTATCGATACATCTAGGAAAAAAGACGGAATGTATTGATACAT
1 ATGTATCGATACATTCAAAAATGTATCGATACATCTAGGAAAAAAGACAGAATGTATCGATACAA
* *
996963 TCATACATGTATGGATACATTAAAAAATGTATCGATACAACTGGGTAAAAAGACAGA
66 TCATACATGTATCGATACAATAAAAAATGTATCGATACAACTGGGTAAAAAGACAGA
* * * *
997020 ATGTATCGATACATTCATACATGTATCGATACATCTGGGTAAAAAGACAGAATGTATCGATACAA
1 ATGTATCGATACATTCAAAAATGTATCGATACATCTAGGAAAAAAGACAGAATGTATCGATACAA
* * *
997085 TCATACATGTATCGATACAATCATACATGTATCGATACAA
66 TCATACATGTATCGATACAATAAAAAATGTATCGATACAA
997125 TCATACATGT
Statistics
Matches: 91, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
122 91 1.00
ACGTcount: A:0.42, C:0.14, G:0.16, T:0.28
Consensus pattern (122 bp):
ATGTATCGATACATTCAAAAATGTATCGATACATCTAGGAAAAAAGACAGAATGTATCGATACAA
TCATACATGTATCGATACAATAAAAAATGTATCGATACAACTGGGTAAAAAGACAGA
Found at i:997155 original size:40 final size:40
Alignment explanation
Indices: 997070--997163 Score: 143
Period size: 40 Copynumber: 2.4 Consensus size: 40
997060 AAAAAGACAG
*
997070 AATGTATCGATACAATCATACATGTATCGATACAATCATA
1 AATGTATCGATACAATCATACATGTATCGATACAATCAAA
* * *
997110 CATGTATCGATACAATCATACATGTATCGATACATTGAAA
1 AATGTATCGATACAATCATACATGTATCGATACAATCAAA
*
997150 AATGTATCAATACA
1 AATGTATCGATACA
997164 TCTGGGTAAA
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 48 1.00
ACGTcount: A:0.43, C:0.17, G:0.11, T:0.30
Consensus pattern (40 bp):
AATGTATCGATACAATCATACATGTATCGATACAATCAAA
Found at i:997157 original size:20 final size:20
Alignment explanation
Indices: 997071--997143 Score: 146
Period size: 20 Copynumber: 3.6 Consensus size: 20
997061 AAAAGACAGA
997071 ATGTATCGATACAATCATAC
1 ATGTATCGATACAATCATAC
997091 ATGTATCGATACAATCATAC
1 ATGTATCGATACAATCATAC
997111 ATGTATCGATACAATCATAC
1 ATGTATCGATACAATCATAC
997131 ATGTATCGATACA
1 ATGTATCGATACA
997144 TTGAAAAATG
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 53 1.00
ACGTcount: A:0.40, C:0.19, G:0.11, T:0.30
Consensus pattern (20 bp):
ATGTATCGATACAATCATAC
Found at i:998586 original size:475 final size:474
Alignment explanation
Indices: 997691--1004231 Score: 7224
Period size: 475 Copynumber: 13.9 Consensus size: 474
997681 GGTGTCTATA
* * * * * *
997691 GATTCTATAAAAAATAGTAGAAAGAAAAGCTTTTCTTACGATACCAAAGCATCAATGTCATCTAT
1 GATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAT
* * *
997756 CCTAAGGAAGGGAATGCGTTTTTCATTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCA
66 CCTAATGAAGGGAATGTGTTTTTCGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCA
* ** ** *
997821 ATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAATTAAAATAGGGCAAAGAAATTATTTCTA
131 ATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCA
* * * * **
997886 GGC-AAA-AAAATCATCAATATCATTGATCCTAAAGAAGAGAATGTGTTTATTTTGCCTAATCAC
196 TGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC
* * * * * * *
997949 AAATTGAATGAAGATCCTTACGAGAATCAATGTTTATTTCATTTGAGGCATGAACTTAGGCTTTA
261 AAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACATAGACTTTA
* * * * *** * * *
998014 CAAAAATTGGT-ATGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTCTATGCTAATG
326 CAAAAATTAGTGA-GAAAAAAGCCTTTCTTTCAAAACCAAAGCATCAATATCAAGTATCCTTACG
* * * * *
998078 AGGATACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGACTAGTATGACTATTCATGTCTGT
390 AGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGATTAGTATGAGTATTCATGT-TGT
* ** * *
998143 GTTATTTAAGGGACAGACCTT
454 CTTATTTAAAAGACAAACTTT
* * * * *
998164 GATTCTATGAAAAATGGTGGAAAGAAAAGCTTTTCTTCCAACCCCAAAGCATCTATGTCATGTAT
1 GATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAT
* * * * * * *
998229 CCTAACGAAGGAAATGTGTTTTTCATTCCCAATCTTAAAAAGAATGGAGATTGGTACGAGAATCA
66 CCTAATGAAGGGAATGTGTTTTTCGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCA
* * * *
998294 ATGCTTGCCTTATTTAAGGGATAAACTTTAATTTTGAGGAAAATAGGGCAAAGAAAAGATTTCCT
131 ATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCA
* * *
998359 TGCAAAAGAAAATTATCAATATCATTTATCCTAATGAGGAGAATGTATTTATTGTGCCTAATCAC
196 TGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC
* * * *
998424 CAAATGAATGAAGATCCTTACTAGAGTCCTTGTTTGTCTCATTTGAGGCATGAACATAGATTTTA
261 AAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACATAGACTTTA
* * *
998489 CAAAAATTAGTGAGAAAAAAGCCTTTCTCTCAAAACTAAAGTATCAATATCAAGTATCCTTACGA
326 CAAAAATTAGTGAGAAAAAAGCCTTTCTTTCAAAACCAAAGCATCAATATCAAGTATCCTTACGA
* * * *
998554 GAAGACTATGTTTATAGTACCTAATCCTAAAAAGAATGGGATTAGTATGAGTATTCAGGGTTGTC
391 GAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGATTAGTATGAGTATTCA-TGTTGTC
*
998619 TTATTTAAAAGACAAACATT
455 TTATTTAAAAGACAAACTTT
998639 GATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAT
1 GATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAT
* * * * * *
998704 CTTAATGAAGGGAATATGTTTTTCATTCCCAATCTTGAAAAGAATGGAGACTATTACGAGAATTA
66 CCTAATGAAGGGAATGTGTTTTTCGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCA
* * * * *
998769 ATGCTTGCCTTATTTAGGGGATAAACTTTTATTTTAAGAAAAATAGGGCAAA-AAAAGAATTCCA
131 ATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCA
* *
998833 --CAGTAAA-AAAA-CATCAATACCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATC
196 TGCA--AAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC
*
998894 ACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAATATAGACTT
259 ACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACATAGACTT
* * * * *
998959 TACAACATTTGGT-AGGAAAAAGCCTTTCTTTCAAAACCGAAGCATCAATATCAAGTATCCTTAC
324 TACAAAAATTAGTGAGAAAAAAGCCTTTCTTTCAAAACCAAAGCATCAATATCAAGTATCCTTAC
** * * ** * * *
999023 TTGAACACTACGTTTATGGCACCTATTCCTGGAAAGAATGGTGATTAGTATGTGTATTCATGGTT
389 GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGG-GATTAGTATGAGTATTCAT-GTT
* * * *
999088 GTCTTTTTTAAATGTCAGACTTT
452 GTCTTATTTAAAAGACAAACTTT
** * * * * **
999111 GATTCTATCAAAAACAGTGGAAA-AAAAACTTTTCTTGCGGCATCAAAGCATCAATGTCATCTGC
1 GATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAT
* * * * ** * *
999175 CCTAATGAAGGGAATGTGTTTTTGGTTCCAAATCTTTAAAAGAATAGATTCTATTATGAGAATCG
66 CCTAATGAAGGGAATGTGTTTTTCGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCA
* * *
999240 TTGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAAATAGGGCAAAGAAAAGATTTCC
131 ATGCTTGCCTTATTTAAGGGATGAACTTTGATTTT-AAGGAAAATAGGGCAAAGAAAAGATTTCC
* * * * * *
999305 ATGCTAAA-AAAATCATCAATATCATTTATCCTAATGAGGAAAATATATTTATTGTGTCTAATCA
195 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * * *
999369 CAAAATGAATGAAGATTCTTACAAGAATCCATGTTTGTCCCATTTGAGGCATGAAGATAGACTTT
260 CAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACATAGACTTT
* * * * *
999434 ACAAAAATTAGTGGGAAAAAATCCTTTCTTTCAAAACCAAAGCATCAATATCATGTATCCTAAAG
325 ACAAAAATTAGTGAGAAAAAAGCCTTTCTTTCAAAACCAAAGCATCAATATCAAGTATCCTTACG
**
999499 AGAAGACTACATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAG--T--G-------GTTGT
390 AGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTGT
*
999553 CTTATTTAAATA-TCAAACTTT
454 CTTATTTAAA-AGACAAACTTT
* * *
999574 GGTTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAACATCAATGTCATGTAT
1 GATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAT
* * * *
999639 CCTAACGAAGGGAATGTGTTTTTCATTCTCAATATTGAAAAGAATGGAGA-TGGTTATGAGAATC
66 CCTAATGAAGGGAATGTGTTTTTCGTTCCCAATCTTGAAAAGAATGGAGACT-GTTATGAGAATC
* * *
999703 AATGCTTGCCTTATTTATGGGATGAACTTTAATTTTAAGAAAAAT-GTGGCAAA-AAAA-ATTTC
130 AATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAG-GGCAAAGAAAAGATTTC
* * * * *
999765 CATGGAAAA-AGAAATTATCACTATCTTTTATCCTAATGAGGAGAATGTGTTTGTAGTGCCTAAT
194 CATGCAAAAGA-AAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT
* * * * * * * *
999829 CACATAGTGAATAAAGATCCTTACTACAATGCATGTTTGTTTCATTTGAGGCGTGAATATAGACT
258 CACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACATAGACT
* *
999894 TTACAAAAATTAGTTG-GAAAAAA-CCTTTTCTTTCAAAATCGAAGCATCAATACTCAA-TATCC
323 TTACAAAAATTAG-TGAGAAAAAAGCC-TTTCTTTCAAAACCAAAGCATCAATA-TCAAGTATCC
* * * * * * *
999956 TTACAAGAAGACTATGTTTAGGGTGCCTAATCCTGAAAAGATTGGGGCTTAGTTTAAGCATTCAT
385 TTACGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCAT
* *
1000021 GGTTATCTTATTTAAAGGACAAACTTT
449 -GTTGTCTTATTTAAAAGACAAACTTT
* * *
1000048 GATTCTACCAAAAATGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCTTCAATGTCATGTAT
1 GATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAT
* * *
1000113 CCTAATGAAGGGAATGTGTTTTTCGTTCCAAATCTTGAAAAGAATGGAGACAGTTTTGAGAATCA
66 CCTAATGAAGGGAATGTGTTTTTCGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCA
* * *
1000178 ATGCTTGCCTTATTTAAGGGATGAACTTAGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCA
131 ATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCA
* ** * *
1000243 TGCAAAAGAAAATCATCAATATCTTTTATCCTAATGCTGAGAATATGTTTATAGTGCATAATCAC
196 TGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC
* *
1000308 AAAATGAATGAAGATCCTTACTAGAATTCATGCTTGTCTCATTTGAGGCATGAACATAGACTTTA
261 AAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACATAGACTTTA
* * * * * * * *
1000373 CAAAAATTAGTGGGAGAAAACCCTTTCTTTCCAAACCAAAGCGTCAATATCATGTATCTTTATGA
326 CAAAAATTAGTGAGAAAAAAGCCTTTCTTTCAAAACCAAAGCATCAATATCAAGTATCCTTACGA
* * * * * *
1000438 GAAGACTATGTTTATGATGCCTAATCATGAAAAGAATAGGGATTAGTGTGGGAATTCAAGTTTGT
391 GAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATG-TTGT
*
1000503 CTTATTTAAGAGACAAA-TGTT
454 CTTATTTAAAAGACAAACT-TT
* * * * *
1000524 GATTCTATAAAAAATGGTGGAAATAAAAGTTTTTCTTGTGACACCGAAGCATCAATGTCATGTAT
1 GATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAT
* * ** *
1000589 CCTAACGAAGGGAATGTGTTTTTCATTCCCAATCTTGAAAAGAACAGAGA-TGGCTATGAGAATC
66 CCTAATGAAGGGAATGTGTTTTTCGTTCCCAATCTTGAAAAGAATGGAGACT-GTTATGAGAATC
* * * * *
1000653 AATG-TCTGCCTTATTTAAAGGATGAACTTTGGTTTTGAGGAAAAAAAGGCAAAGAAAAGATTTC
130 AATGCT-TGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTC
* * * * *
1000717 CATGCAAAAGAAAATCATCAATATCATCTATCTTAATAAGGAGAATATATTTATAGTGCCTAATC
194 CATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC
* * * * *
1000782 ACAAAATGAATGAATATCATTACTAGAATCCATGTTTGTCTCATTTAAGGAATGAACAAAGACTT
259 ACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACATAGACTT
* * * * * * * *
1000847 TATAACAATT-GTTGGGAAAAAA-CCTTTCTTTCAAAATCGAAGCACCAATGTCAAGTATCATTA
324 TACAAAAATTAG-TGAGAAAAAAGCCTTTCTTTCAAAACCAAAGCATCAATATCAAGTATCCTTA
* * * ** *
1000910 CGAGAACACTATGTTCATGGTGCCTAATCGTGAAAAGTTTGAGGATTAGTATGAGCATTCATTGT
388 CGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATG-GGATTAGTATGAGTATTCA-TGT
* *
1000975 TGTCTTATTTAAAATAAAAACTTT
451 TGTCTTATTTAAAAGACAAACTTT
** * *
1000999 GATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGGCATGTAT
1 GATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAT
* *
1001064 CCTAATGAAGGGAATGTGTTTTTCGTTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCA
66 CCTAATGAAGGGAATGTGTTTTTCGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCA
* ** * * ** * * *
1001129 ATGTTTGCCTTATTTGGGGGATAAACTTTAATTTGGAGGTAAATAAGGCAAAGAAAAGATTTCCT
131 ATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCA
* * * * * *
1001194 TGCAAAAGAAAATTATCAATATCATTTATCCTAAGGAGGAAAATGTATTTATTGTGCCAAATCAC
196 TGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA-
* * * *
1001259 CAAAA-AAATGAAAATCCTTA-TGAGAGTCCTTGTTTGTCTCATTTGAGGCATGAACATAGACTT
260 CAAAATGAATGAAGATCCTTACT-AGAATCCATGTTTGTCTCATTTGAGGCATGAACATAGACTT
* * * ** * *
1001322 CATAAAAATTAGTGAGAAAAAAGCCTTTCTCTC-AAACTGAAGCATCAATATCAAGTATCCGTAT
324 TACAAAAATTAGTGAGAAAAAAGCCTTTCTTTCAAAACCAAAGCATCAATATCAAGTATCCTTAC
* * *
1001386 GAGAAGACTATGTTTATAGTGCC-AATCCTAAAAAGATTAGGGATTAGTATGAGTATTCATGGTT
389 GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCAT-GTT
* * *
1001450 GTTTTATTTAAAAAATAAACTTT
452 GTCTTATTTAAAAGACAAACTTT
* * *
1001473 GATTCTAT-AAAAATGGTGGAACGAAAAGCTTTTCTTGCGACACCAAAGAATCAATGTCATGTAA
1 GATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAT
* * * * **
1001537 CCTAATGAAGGGAATATGTTTATCGTTCCCAATCATGAAAAGAATGGAGACTATTACAAGAATCA
66 CCTAATGAAGGGAATGTGTTTTTCGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCA
* * * * * * *
1001602 ATGTTTGCCTCATTTACGGGACGAACTTCGATTTTAAGGAAAATAGGGCAAAAAAAAGATTTTCA
131 ATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCA
* * * *
1001667 TGCAAAA-AAAATCGTCAATATCATTTATCCTAATGAGGAGAATGTGTTTATTGTGCCAAATCAT
196 TGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC
* * *
1001731 AAAATGAGTGAAGATCTTTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACATGGACTTTA
261 AAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACATAGACTTTA
* * *
1001796 CAAAAATTCA-T-AGCAAAAAATCCTTTCTTTCAAAATCGAAGCATCAATA-CAAAGTATCCTTA
326 CAAAAATT-AGTGAG-AAAAAAGCCTTTCTTTCAAAACCAAAGCATCAATATC-AAGTATCCTTA
* * * *
1001858 CGAGAAGACTATGTTTATAGTGCCCAATCCT-AGAAAGATTGGG--GA-TATGAG---T-ATGTT
388 CGAGAAGACTATGTTTATGGTGCCTAATCCTGA-AAAGAATGGGATTAGTATGAGTATTCATGTT
*
1001915 ATCTTATTTAAAAGACAAACTTT
452 GTCTTATTTAAAAGACAAACTTT
* * * * *
1001938 GATTCTATCAAAAATAGTGGAAAGAAAAGCATTTCATGCAACACCAAAGCATCAATGTCTTGTAT
1 GATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAT
** * * * * * *
1002003 TGTAATAAAGGGAATGTGTTTTTGGTTTCCAATCTTGAAAACAATGAAGACTGTTACGAGAATCA
66 CCTAATGAAGGGAATGTGTTTTTCGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCA
* * *
1002068 ATGCTTGCCTTTTTTAAGGGATGAACTTTGATTTTGAGGAAAATAGGGCAAAGAAAAGGTTTCCA
131 ATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCA
* * * * *
1002133 TGCAAAAAAAAAT-GTCAATGTCATTTATCCTAATGAGGGGAATATGTTTATAGTGCCTAATCAC
196 TGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC
* * * *
1002197 AAAATGAATGAAGATCCTTACTAGAATCCATGTTTCTCTTATTTGAGGCATGAACATGGACTTCA
261 AAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACATAGACTTTA
* * * * * * *
1002262 CAACAATTGGTGGGAGAAAAGCCTTTCTTTCGAAACCAAAGCATCAATATCATGTAT-CTTA-AA
326 CAAAAATTAGTGAGAAAAAAGCCTTTCTTTCAAAACCAAAGCATCAATATCAAGTATCCTTACGA
* * * *
1002325 G-AGACTGTTTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGGTTCT
391 GAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCAT-GTTGT
* *
1002389 CTTATTTAAATGTCAAACTTT
454 CTTATTTAAAAGACAAACTTT
* * *
1002410 GATTCTATCAAAAATAGTAGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTAT
1 GATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAT
* * * ** *
1002475 CCTAATGAAGGGAATGCGTTTTTCGTTCCCAAACTTTAAAAGAATAAAGACCGTTATGAGAATCA
66 CCTAATGAAGGGAATGTGTTTTTCGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCA
* *
1002540 ATTG-TTGCCCTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
131 A-TGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
* * * * *
1002604 ATACAAAAG---------AA-A--A-TTATCCTAATGAGTAGAGTGTATTTATTGTGCCTAATCA
195 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * * * * * * * *
1002656 CAGAATGAATTAAGATCCTTACTCGAATCCTTGTTTGTCTTATTTAATGCTTCAACATAGACTTT
260 CAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACATAGACTTT
* ** *
1002721 ACAAAAA-TAGTGAGAAAAAAGCCTTTCTCTCAAAACTGAAGCGTCAATATCAAGTATCCTTACG
325 ACAAAAATTAGTGAGAAAAAAGCCTTTCTTTCAAAACCAAAGCATCAATATCAAGTATCCTTACG
* * *
1002785 AGAAGACTATGTTTATGGTGCCT--TCCTAAAAAGACAAGGGATTAGTATGAGTACTCATGGTTG
390 AGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGA-ATGGGATTAGTATGAGTATTCAT-GTTG
* *
1002848 TCTTTTTTAAAAGATAAAAACTTT
453 TCTTATTTAAAAG--ACAAACTTT
* * *
1002872 GATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCTACA-CAAAGCATCAATGTCATCTAT
1 GATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAT
* * * * * * * *
1002936 CCTACTGAAGGGAAAGTGTTGTTGGTTTCCAATCTTGAAAAGAATAGAGATTGTTA-GTATAATC
66 CCTAATGAAGGGAATGTGTTTTTCGTTCCCAATCTTGAAAAGAATGGAGACTGTTATG-AGAATC
* * ** ** *
1003000 AATGCTT-CCTTGTTTAAGGGATGAACTTTAATTTTAAGGGTAATATAGCAAAGAAAAGATTTTC
130 AATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
* * * * * * *
1003064 AAGCAAAAGAAAACCTTCAATATCATTTATACTAATGAGGAGAAAGTGTTTGTAGTTCCTAATCA
195 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * * * * * * * * *
1003129 CAGAATGAATGAAAATCATTACAAGAATCAATGTTTGCCTCATTGGAGACACGAACTTAGACTTT
260 CAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACATAGACTTT
* * * * * * * ** * *
1003194 ACAAAACTTGGGGAGAAGATAGCCTTTCTTGCAAAACCAAAGCATTAATAGTGTA-TATCCTAAT
325 ACAAAAATTAGTGAGAAAAAAGCCTTTCTTTCAAAACCAAAGCATCAATA-TCAAGTATCCTTAC
*
1003258 GAGAAGACTATGTTTATGGTGCCTAAT-CTCAAAAAGAATGGGGATTAGTATGAGTATTCATGGT
389 GAGAAGACTATGTTTATGGTGCCTAATCCT-GAAAAGAAT-GGGATTAGTATGAGTATTCAT-GT
*
1003322 TGTCTTATTTAAGAGACAAACTTT
451 TGTCTTATTTAAAAGACAAACTTT
* * * *
1003346 GATTCTATCAACAATGGTGGAAAGAAAAACTTTTCTTGGGACACCAAAGCATCAATCTCATGTAT
1 GATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAT
* ** * *** *
1003411 CCTAAAGAATAGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAACCTAGACTATTATGAGAATCA
66 CCTAATGAAGGGAATGTGTTTTTCGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCA
* * * * * *
1003476 ACGCTTGCCTTATTTAAAGGATGAACATTGATTTAAAGGAAAATTGGGCGAAA-AAATGATTTCC
131 ATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGC-AAAGAAAAGATTTCC
* * *
1003540 ACAG-AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAAGTGTTTATAATGCCTAATC
195 A-TGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC
* * * * ** * * ** *
1003604 ACAAAACGAATGAAGATCATTACTAGAAGCAATGTTTCCCTCAATTGAGACACAAACTTAGACTT
259 ACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACATAGACTT
* * * * * * *
1003669 TACAAAAATTGGTGAGAAGAAAGCCTTTCTTGCAAAACCAAAGCATTAATATCATGTATCCTAAT
324 TACAAAAATTAGTGAGAAAAAAGCCTTTCTTTCAAAACCAAAGCATCAATATCAAGTATCCTTAC
* * * *
1003734 GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTATTTTGAGTATTGAAGGTT
389 GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGAGTATT-CATGTT
* * **
1003799 GTATTATTTAAGAGACAAACTAC
452 GTCTTATTTAAAAGACAAACTTT
* * * *
1003822 GATTCTAT-AAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACGCCAAAGCATCAATGTCATGCAT
1 GATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAT
* ** * * * * * * * *
1003886 CATAATGAACAGAAAGTGTTCTT-GTTCCCAATCTTCAAAAGAAAGGAGACTATTACGACAATCG
66 CCTAATGAAGGGAATGTGTTTTTCGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCA
* * * * * * * *
1003950 ATGCTTGTCATATTTATGAGATGAATTTTGATTTTAAGGAAATTAGGGCAAAGAAAAGATTTTCG
131 ATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCA
* * * * *
1004015 TGAAAAAGAAAATCTTCAATATCATTTATCATAACT-AGGAGAATGTGTTTACAGTACCTAATCA
196 TGCAAAAGAAAATCATCAATATCATTTATCCTAA-TGAGGAGAATGTGTTTATAGTGCCTAATCA
* * * *
1004079 CCAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCATTAACTTAGAATTT
260 CAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACATAGACTTT
* * * * * * *
1004144 ACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAATCCAAAGCATCAATATCATA-TAT-TTTAA
325 ACAAAAATTAGTGAGAAAAAAGCCTTTCTTTCAAAACCAAAGCATCAATATCA-AGTATCCTT-A
*
1004207 TGAGAAGACTATGTTTATGGTGCCT
388 CGAGAAGACTATGTTTATGGTGCCT
1004232 GTCGTAACGT
Statistics
Matches: 5144, Mismatches: 800, Indels: 247
0.83 0.13 0.04
Matches are distributed among these distances:
459 41 0.01
460 199 0.04
461 93 0.02
462 259 0.05
463 91 0.02
464 125 0.02
465 34 0.01
466 315 0.06
467 14 0.00
469 2 0.00
470 8 0.00
471 206 0.04
472 517 0.10
473 507 0.10
474 762 0.15
475 1066 0.21
476 894 0.17
477 11 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (474 bp):
GATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAT
CCTAATGAAGGGAATGTGTTTTTCGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCA
ATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCA
TGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC
AAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACATAGACTTTA
CAAAAATTAGTGAGAAAAAAGCCTTTCTTTCAAAACCAAAGCATCAATATCAAGTATCCTTACGA
GAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGATTAGTATGAGTATTCATGTTGTCT
TATTTAAAAGACAAACTTT
Found at i:1007485 original size:32 final size:32
Alignment explanation
Indices: 1007442--1007511 Score: 113
Period size: 32 Copynumber: 2.2 Consensus size: 32
1007432 GCTTCGTAGC
*
1007442 GATACATTGTATCGATACAAAACTTATGCATT
1 GATACAATGTATCGATACAAAACTTATGCATT
* *
1007474 GATACAATGTATCGATACAACACTTATGTATT
1 GATACAATGTATCGATACAAAACTTATGCATT
1007506 GATACA
1 GATACA
1007512 GTTATGGTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.33
Consensus pattern (32 bp):
GATACAATGTATCGATACAAAACTTATGCATT
Found at i:1008374 original size:101 final size:103
Alignment explanation
Indices: 1008261--1008491 Score: 281
Period size: 101 Copynumber: 2.3 Consensus size: 103
1008251 TGAAGAAAAA
** * * ** *
1008261 TGCCAATGTGCTGAGGCAAGGCCAGCAACATTGGGCTTTG-GA-ATGTTGAAGATGCCAATACGT
1 TGCCAATGTGCTGATTCAAGGCCAGCAACATT-GG-TTTGAAAGATGATGAAGACACCAATACGC
* *
1008324 TAATTCAAGGCCAACGATATTGGACTT-AAG-GATGAAGG
64 TAATTCAAGGCCAACAATATTGGACTTAAAGAGACGAAGG
* * * *
1008362 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTTTGAAAGATGATGAAGGCACCAATATGCTG
1 TGCCAATGTGCTGATTCAAGGCCAGCAACATTGGTTTGAAAGATGATGAAGACACCAATACGCTA
1008427 ATTCAAGGCCAACAATATTGGACTTAAAGATGACGAAGG
66 ATTCAAGGCCAACAATATTGGACTTAAAGA-GACGAAGG
*
1008466 TGCCAATATGCTGATTCAAGGCCAGC
1 TGCCAATGTGCTGATTCAAGGCCAGC
1008492 GATATCGAAC
Statistics
Matches: 111, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
99 4 0.04
100 3 0.03
101 69 0.62
102 3 0.03
104 32 0.29
ACGTcount: A:0.32, C:0.18, G:0.27, T:0.23
Consensus pattern (103 bp):
TGCCAATGTGCTGATTCAAGGCCAGCAACATTGGTTTGAAAGATGATGAAGACACCAATACGCTA
ATTCAAGGCCAACAATATTGGACTTAAAGAGACGAAGG
Found at i:1008429 original size:52 final size:52
Alignment explanation
Indices: 1008307--1008696 Score: 354
Period size: 52 Copynumber: 7.9 Consensus size: 52
1008297 TTTGGAATGT
* * * * *
1008307 TGAAGATGCCAATACGTTAATTCAAGGCCAACGATATTGGACTT-AAG--GA
1 TGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGA
* * *
1008356 TGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGG-TTTGAAAGATGA
1 TGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-AAAGATGA
** * *
1008408 TGAAGGCACCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGA
1 TGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGA
* * *
1008460 CGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATCGAACTT-AA-A-GA
1 TGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGA
* * * *
1008509 TGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGG
1 TGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGA
** * * *
1008561 CAAAGGCT-CCAATATGCTAATTCAAGGCTAGTGATATTGGAC-T-----T-A
1 TGAAGG-TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGA
* * *
1008606 --AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTT-AA-A-GA
1 TGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGA
* *
1008653 -CAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTTA
1 TGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
1008697 TGCCAATGTG
Statistics
Matches: 277, Mismatches: 47, Indels: 34
0.77 0.13 0.09
Matches are distributed among these distances:
42 1 0.00
43 32 0.12
44 1 0.00
46 1 0.00
47 1 0.00
48 41 0.15
49 73 0.26
50 6 0.02
51 4 0.01
52 114 0.41
53 3 0.01
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.24
Consensus pattern (52 bp):
TGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGA
Found at i:1008470 original size:153 final size:149
Alignment explanation
Indices: 1008308--1008696 Score: 432
Period size: 153 Copynumber: 2.6 Consensus size: 149
1008298 TTGGAATGTT
* * *
1008308 GAAGATGCCAATACGTTAATTCAAGGCCAACGATATTGGACTTAAGGATGAAGGTGCCAATGTGC
1 GAAGGTGCCAATA-G-T-ATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGC
* ** *
1008373 TGATTCAAGGCCAGCGACATTGG-TTTGAAAGATGATGAAGGCACCAATATGCTGATTCAAGGCC
63 TGATTCAAGGCCAGCGACATTGGACTT-AAAGATGACAAAGGCACCAATATGCTAATTCAAGGCC
1008437 AACAATATTGGACTTAAAGATGAC
127 AACAATATTGGACTTAAAGATG-C
* * *
1008461 GAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATCGAACTTAAAGATGAAGATGCCAATGTGC
1 GAAGGTGCCAATA-G-T-ATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGC
* * *
1008526 TGATTCAAGGCCAGCGACATTGGACTTAAAGATGGCAAAGGCTCCAATATGCTAATTCAAGGCTA
63 TGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGGCACCAATATGCTAATTCAAGGCCA
*** *
1008591 GTGATATTGGACTTAAAGGTGC
128 ACAATATTGGACTTAAAGATGC
* * * * * *
1008613 CAATGTG-C--T-G-ATTCAAGGCCAGCGACATTGGTCTTAAAGA-CAAGGTGCCAATATGCTGA
1 GAAGGTGCCAATAGTATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGA
* *
1008672 TTCAAGGCCAGCGATATTGGGCTTA
66 TTCAAGGCCAGCGACATTGGACTTA
1008697 TGCCAATGTG
Statistics
Matches: 204, Mismatches: 31, Indels: 12
0.83 0.13 0.05
Matches are distributed among these distances:
143 39 0.19
144 26 0.13
147 1 0.00
149 1 0.00
151 1 0.00
152 6 0.03
153 128 0.63
154 2 0.01
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.24
Consensus pattern (149 bp):
GAAGGTGCCAATAGTATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGA
TTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGGCACCAATATGCTAATTCAAGGCCAACA
ATATTGGACTTAAAGATGC
Found at i:1008511 original size:101 final size:96
Alignment explanation
Indices: 1008326--1008868 Score: 433
Period size: 101 Copynumber: 5.8 Consensus size: 96
1008316 CAATACGTTA
* * *
1008326 ATTCAAGGCCAACGATATTGGACTTAAG-GATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGA
1 ATTCAAGGCCAACGACATTGGACTTAAGAGACGAAGGTGCCAATATGCTGATTCAAGGCCAGCGA
* ** *
1008390 CATTGGTTTGAAAGATGATGAAGGCACCAATATGCTG
66 TATTGACTT--AA-A-GATGAAGG--CCAATGTGCTG
* *
1008427 ATTCAAGGCCAACAATATTGGACTTAAAGATGACGAAGGTGCCAATATGCTGATTCAAGGCCAGC
1 ATTCAAGGCCAACGACATTGGACTT-AAGA-GACGAAGGTGCCAATATGCTGATTCAAGGCCAGC
*
1008492 GATATCGAACTTAAAGATGAAGATGCCAATGTGCTG
64 GATATTG-ACTTAAAGATGAAG--GCCAATGTGCTG
* * * * *
1008528 ATTCAAGGCCAGCGACATTGGACTTAAAGATGGCAAAGGCT-CCAATATGCTAATTCAAGGCTAG
1 ATTCAAGGCCAACGACATTGGACTT-AAGA-GACGAAGG-TGCCAATATGCTGATTCAAGGCCAG
* *
1008592 TGATATTGGACTTAAAG--G--TGCCAATGTGCTG
63 CGATATT-GACTTAAAGATGAAGGCCAATGTGCTG
* *
1008623 ATTCAAGGCCAGCGACATTGGTCTTAA-AGAC-AAGGTGCCAATATGCTGATTCAAGGCCAGCGA
1 ATTCAAGGCCAACGACATTGGACTTAAGAGACGAAGGTGCCAATATGCTGATTCAAGGCCAGCGA
*
1008686 TATTGGGCTT----AT----GCCAATGTGCTG
66 TATT-GACTTAAAGATGAAGGCCAATGTGCTG
* * * **
1008710 ATTCAAGGCCAGCGACATTGGTCTTAA-AGAC-AAGGTACCAATATGCTGATTCAAGGCCAATGA
1 ATTCAAGGCCAACGACATTGGACTTAAGAGACGAAGGTGCCAATATGCTGATTCAAGGCCAGCGA
1008773 TATTGGACTT---G-T----GCCAATGT-CTG
66 TATT-GACTTAAAGATGAAGGCCAATGTGCTG
* * * ** * *
1008796 ATTCAAGGCCAGCGACATTGGTCTTAA-AGA-TAAAATGCCAATATGCTGATTCAAGCCCAGTGA
1 ATTCAAGGCCAACGACATTGGACTTAAGAGACGAAGGTGCCAATATGCTGATTCAAGGCCAGCGA
1008859 TATTGGACTT
66 TATT-GACTT
1008869 GTGCCAATGT
Statistics
Matches: 396, Mismatches: 33, Indels: 41
0.84 0.07 0.09
Matches are distributed among these distances:
86 70 0.18
87 90 0.23
90 1 0.00
91 36 0.09
92 2 0.01
93 1 0.00
94 2 0.01
95 36 0.09
99 1 0.00
101 109 0.28
102 6 0.02
103 3 0.01
104 37 0.09
105 2 0.01
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.25
Consensus pattern (96 bp):
ATTCAAGGCCAACGACATTGGACTTAAGAGACGAAGGTGCCAATATGCTGATTCAAGGCCAGCGA
TATTGACTTAAAGATGAAGGCCAATGTGCTG
Found at i:1008712 original size:39 final size:39
Alignment explanation
Indices: 1008658--1008942 Score: 221
Period size: 39 Copynumber: 6.9 Consensus size: 39
1008648 AAAGACAAGG
* *
1008658 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTTA
1 TGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTA
* *
1008697 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAA
1 TGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTT-------A
* * ** *
1008743 GGTACCAATATGCTGATTCAAGGCCAATGATATTGGACTTG
1 --TGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTA
* *
1008784 TGCCAATGT-CTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAA
1 TGCCAATGTGCTGATTCAAGGCCAGCGATATTGGAC-T-----T---A
* * * *
1008831 TGCCAATATGCTGATTCAAGCCCAGTGATATTGGACTTG
1 TGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTA
* * *
1008870 TGCCAATGTGCTGATTCAAGGCCAGCAATATTAGACTTG
1 TGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTA
* *
1008909 TGCCAATGTGCTGATTCAAAGCCAGCGACATTGG
1 TGCCAATGTGCTGATTCAAGGCCAGCGATATTGG
1008943 TCCTGAAGAT
Statistics
Matches: 195, Mismatches: 32, Indels: 38
0.74 0.12 0.14
Matches are distributed among these distances:
38 22 0.11
39 107 0.55
42 1 0.01
44 1 0.01
46 1 0.01
47 9 0.05
48 54 0.28
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (39 bp):
TGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTA
Found at i:1008723 original size:87 final size:87
Alignment explanation
Indices: 1008514--1008895 Score: 552
Period size: 87 Copynumber: 4.3 Consensus size: 87
1008504 AAAGATGAAG
*
1008514 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGGCAAAGGCT-CCAATATGC
1 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGA---C-AAGG-TGCCAATATGC
* *
1008578 TAATTCAAGGCTAGTGATATTGGACTT
61 TGATTCAAGGCCAGTGATATTGGACTT
1008605 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCT
1 --A--TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCT
* *
1008670 GATTCAAGGCCAGCGATATTGGGCTT
62 GATTCAAGGCCAGTGATATTGGACTT
*
1008696 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTACCAATATGCTGATT
1 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATT
*
1008761 CAAGGCCAATGATATTGGACTT
66 CAAGGCCAGTGATATTGGACTT
* * **
1008783 GTGCCAATGT-CTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAATGCCAATATGCTGATT
1 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATT
*
1008847 CAAGCCCAGTGATATTGGACTT
66 CAAGGCCAGTGATATTGGACTT
*
1008869 GTGCCAATGTGCTGATTCAAGGCCAGC
1 ATGCCAATGTGCTGATTCAAGGCCAGC
1008896 AATATTAGAC
Statistics
Matches: 269, Mismatches: 16, Indels: 14
0.90 0.05 0.05
Matches are distributed among these distances:
86 80 0.30
87 107 0.40
89 1 0.00
90 1 0.00
91 36 0.13
92 1 0.00
93 1 0.00
95 42 0.16
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.26
Consensus pattern (87 bp):
ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATT
CAAGGCCAGTGATATTGGACTT
Found at i:1008840 original size:173 final size:177
Alignment explanation
Indices: 1008514--1008895 Score: 576
Period size: 173 Copynumber: 2.2 Consensus size: 177
1008504 AAAGATGAAG
1008514 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGGCAAAGGCTCCAATATGCT
1 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGA--GCAAAGGCTCCAATATGCT
* *
1008579 AATTCAAGGCTAGTGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGG
64 AATTCAAGGCCAATGATATTGGACTT--A-GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGG
** * *
1008644 TCTTAAAGACAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
126 TCTTAAAGACAAAATGCCAATATGCTGATTCAAGCCCAGCGATATTGGACTT
* *
1008696 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGA-C-AAGG-TACCAATATGCTG
1 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAGCAAAGGCT-CCAATATGCTA
1008758 ATTCAAGGCCAATGATATTGGACTT-GTGCCAATGT-CTGATTCAAGGCCAGCGACATTGGTCTT
65 ATTCAAGGCCAATGATATTGGACTTAGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTT
* *
1008821 AAAGATAAAATGCCAATATGCTGATTCAAGCCCAGTGATATTGGACTT
130 AAAGACAAAATGCCAATATGCTGATTCAAGCCCAGCGATATTGGACTT
*
1008869 GTGCCAATGTGCTGATTCAAGGCCAGC
1 ATGCCAATGTGCTGATTCAAGGCCAGC
1008896 AATATTAGAC
Statistics
Matches: 188, Mismatches: 11, Indels: 11
0.90 0.05 0.05
Matches are distributed among these distances:
173 96 0.51
174 10 0.05
177 1 0.01
178 37 0.20
179 1 0.01
182 43 0.23
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.26
Consensus pattern (177 bp):
ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAGCAAAGGCTCCAATATGCTAA
TTCAAGGCCAATGATATTGGACTTAGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTA
AAGACAAAATGCCAATATGCTGATTCAAGCCCAGCGATATTGGACTT
Found at i:1008892 original size:125 final size:129
Alignment explanation
Indices: 1008747--1008998 Score: 350
Period size: 125 Copynumber: 2.0 Consensus size: 129
1008737 AGACAAGGTA
** * *
1008747 CCAATATGCTGATTCAAGGCCAATGATATTGGACTTGTGCCAATGT-CTGATTCAAGGCCAGCGA
1 CCAATATGCTGATTCAAGGCCAACAATATTAGACTTGTGCCAATGTGCTGATTCAAAGCCAGCGA
* *
1008811 CATTGGTCTTAAAGAT-A-AAA-TGCCAATATGCTGATTCAAGCCCAGTGATATTGGACTTGTG
66 CATTGGTCCTAAAGATGACAAAGCGCCAATATGCTGATTCAAGCCCAGTGATATTGGACTTGTG
* *
1008872 CCAATGTGCTGATTCAAGGCCAGCAATATTAGACTTGTGCCAATGTGCTGATTCAAAGCCAGCGA
1 CCAATATGCTGATTCAAGGCCAACAATATTAGACTTGTGCCAATGTGCTGATTCAAAGCCAGCGA
* * * * *
1008937 CATTGGTCCTGAAGATGACAAAGGCGCCAGTATGTTGATTTAAGGCCAGTGATATTGGACTT
66 CATTGGTCCTAAAGATGACAAA-GCGCCAATATGCTGATTCAAGCCCAGTGATATTGGACTT
1008999 AAAGATGAAG
Statistics
Matches: 109, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
125 41 0.38
126 31 0.28
127 1 0.01
128 3 0.03
130 33 0.30
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (129 bp):
CCAATATGCTGATTCAAGGCCAACAATATTAGACTTGTGCCAATGTGCTGATTCAAAGCCAGCGA
CATTGGTCCTAAAGATGACAAAGCGCCAATATGCTGATTCAAGCCCAGTGATATTGGACTTGTG
Found at i:1009004 original size:52 final size:52
Alignment explanation
Indices: 1008910--1009099 Score: 206
Period size: 52 Copynumber: 3.7 Consensus size: 52
1008900 TTAGACTTGT
* * * * * *
1008910 GCCAATGTGCTGATTCAAAGCCAGCGACATTGGTCCTGAAGATGACAAAGGC
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGC
* * * * **
1008962 GCCAGTATGTTGATTTAAGGCCAGTGATATTGGACTTAAAGATG---AAGAT
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGC
* * * *
1009011 ACCAATGTGCAGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGGC
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGC
*
1009063 GCCAATATGCTGATTCAAGGCTAGCGATATTGGACTT
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1009100 GGAAGAAGAC
Statistics
Matches: 108, Mismatches: 27, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
49 39 0.36
52 69 0.64
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (52 bp):
GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGC
Found at i:1009092 original size:101 final size:101
Alignment explanation
Indices: 1008911--1009099 Score: 288
Period size: 101 Copynumber: 1.9 Consensus size: 101
1008901 TAGACTTGTG
* * * * *
1008911 CCAATGTGCTGATTCAAAGCCAGCGACATTGGTCCTGAAGATGACAAAGGCGCCAGTATGTTGAT
1 CCAATGTGCAGATTCAAAGCCAGCGACATTGGACCTAAAGATGACAAAGGCGCCAATATGCTGAT
* *
1008976 TTAAGGCCAGTGATATTGGACTTAAAGATGAAGATA
66 TCAAGGCCAGCGATATTGGACTTAAAGATGAAGATA
* *
1009012 CCAATGTGCAGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGGCGCCAATATGCTGAT
1 CCAATGTGCAGATTCAAAGCCAGCGACATTGGACCTAAAGATGACAAAGGCGCCAATATGCTGAT
*
1009077 TCAAGGCTAGCGATATTGGACTT
66 TCAAGGCCAGCGATATTGGACTT
1009100 GGAAGAAGAC
Statistics
Matches: 78, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
101 78 1.00
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24
Consensus pattern (101 bp):
CCAATGTGCAGATTCAAAGCCAGCGACATTGGACCTAAAGATGACAAAGGCGCCAATATGCTGAT
TCAAGGCCAGCGATATTGGACTTAAAGATGAAGATA
Found at i:1009202 original size:30 final size:29
Alignment explanation
Indices: 1009122--1009217 Score: 124
Period size: 30 Copynumber: 3.3 Consensus size: 29
1009112 CACCAACTTG
*
1009122 TGTGGGCTTTTGAAAGGGTTG-CACCAACT
1 TGTGGGCTTTTGAAAGGG-TGCCACTAACT
* * *
1009151 TGTGTGCTTTT-AAAGGTTGCCACTGACT
1 TGTGGGCTTTTGAAAGGGTGCCACTAACT
1009179 TGTGGGCTTTTGAAAAGGGTGCCACTAACT
1 TGTGGGCTTTTG-AAAGGGTGCCACTAACT
1009209 TGTGGGCTT
1 TGTGGGCTT
1009218 AAAAGGAGAA
Statistics
Matches: 57, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
27 2 0.04
28 21 0.37
29 10 0.18
30 24 0.42
ACGTcount: A:0.19, C:0.17, G:0.30, T:0.34
Consensus pattern (29 bp):
TGTGGGCTTTTGAAAGGGTGCCACTAACT
Found at i:1009308 original size:34 final size:34
Alignment explanation
Indices: 1009208--1009309 Score: 136
Period size: 33 Copynumber: 3.1 Consensus size: 34
1009198 TGCCACTAAC
* * *
1009208 TTGTGGGCTTAAAAGGAGAAAGA-TGCCACAGAG
1 TTGTGGACTTAAAAGGAAAAAGAGTGCCACGGAG
*
1009241 TTGTGGACTTAAAAGGGAAAAG-GTGCCACGGAG
1 TTGTGGACTTAAAAGGAAAAAGAGTGCCACGGAG
* *
1009274 TTGTGGATTTAAAAGGAAAAAGAGTGCCATGGAG
1 TTGTGGACTTAAAAGGAAAAAGAGTGCCACGGAG
1009308 TT
1 TT
1009310 ATGGGCTTTA
Statistics
Matches: 60, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
33 48 0.80
34 12 0.20
ACGTcount: A:0.35, C:0.10, G:0.33, T:0.22
Consensus pattern (34 bp):
TTGTGGACTTAAAAGGAAAAAGAGTGCCACGGAG
Found at i:1010784 original size:9 final size:9
Alignment explanation
Indices: 1010759--1010827 Score: 63
Period size: 8 Copynumber: 7.8 Consensus size: 9
1010749 CTTTTTGTTG
1010759 TTGTTTCTTT
1 TTGTTT-TTT
*
1010769 TTGTTTGTT
1 TTGTTTTTT
*
1010778 TT-TTTTGT
1 TTGTTTTTT
*
1010786 TTGTGTTGTT
1 TTGT-TTTTT
*
1010796 TTGTTTTTG
1 TTGTTTTTT
1010805 TTGTTTTTT
1 TTGTTTTTT
1010814 TT-TTTTTT
1 TTGTTTTTT
1010822 TT-TTTT
1 TTGTTTT
1010828 GCGGAGGACG
Statistics
Matches: 49, Mismatches: 8, Indels: 6
0.78 0.13 0.10
Matches are distributed among these distances:
8 18 0.37
9 18 0.37
10 13 0.27
ACGTcount: A:0.00, C:0.01, G:0.14, T:0.84
Consensus pattern (9 bp):
TTGTTTTTT
Found at i:1010792 original size:29 final size:32
Alignment explanation
Indices: 1010750--1010815 Score: 77
Period size: 29 Copynumber: 2.2 Consensus size: 32
1010740 ATCTGGACCC
1010750 TTTTTGTTGTTGTT-TCTT-TTTGT-TTGTTT
1 TTTTTGTTGTTGTTGTCTTGTTTGTGTTGTTT
* *
1010779 TTTTTGTT-TGTGTTGTTTTGTTTTTGTTGTTT
1 TTTTTGTTGT-TGTTGTCTTGTTTGTGTTGTTT
1010811 TTTTT
1 TTTTT
1010816 TTTTTTTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
28 1 0.03
29 12 0.39
30 3 0.10
31 4 0.13
32 11 0.35
ACGTcount: A:0.00, C:0.02, G:0.18, T:0.80
Consensus pattern (32 bp):
TTTTTGTTGTTGTTGTCTTGTTTGTGTTGTTT
Found at i:1010816 original size:14 final size:14
Alignment explanation
Indices: 1010750--1010827 Score: 72
Period size: 14 Copynumber: 5.4 Consensus size: 14
1010740 ATCTGGACCC
*
1010750 TTTTTGTTGTTGTTT
1 TTTTTTTTGTTG-TT
1010765 CTTTTTGTTTGTT-TT
1 -TTTTT-TTTGTTGTT
1010780 TTTTGTTTGTGTTGTT
1 TTTT-TTT-TGTTGTT
*
1010796 TTGTTTTTGTTGTT
1 TTTTTTTTGTTGTT
1010810 TTTTTTTT-TT-TT
1 TTTTTTTTGTTGTT
1010822 TTTTTT
1 TTTTTT
1010828 GCGGAGGACG
Statistics
Matches: 55, Mismatches: 3, Indels: 12
0.79 0.04 0.17
Matches are distributed among these distances:
12 8 0.15
13 2 0.04
14 20 0.36
15 10 0.18
16 10 0.18
17 5 0.09
ACGTcount: A:0.00, C:0.01, G:0.15, T:0.83
Consensus pattern (14 bp):
TTTTTTTTGTTGTT
Found at i:1010816 original size:33 final size:33
Alignment explanation
Indices: 1010752--1010815 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 33
1010742 CTGGACCCTT
1010752 TTTGTTGTTGTTTCTTTTTGTTTGTTTTTTTTG
1 TTTGTTGTTGTTTCTTTTTGTTTGTTTTTTTTG
*
1010785 TTTG-TGTTGTTTTGTTTTTG-TTGTTTTTTTT
1 TTTGTTGTTG-TTTCTTTTTGTTTGTTTTTTTT
1010816 TTTTTTTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 16 0.55
33 13 0.45
ACGTcount: A:0.00, C:0.02, G:0.19, T:0.80
Consensus pattern (33 bp):
TTTGTTGTTGTTTCTTTTTGTTTGTTTTTTTTG
Found at i:1014264 original size:24 final size:24
Alignment explanation
Indices: 1014232--1014286 Score: 110
Period size: 24 Copynumber: 2.3 Consensus size: 24
1014222 AAATTGACTG
1014232 TTCGAAATTAATCCTTAGAAGCTC
1 TTCGAAATTAATCCTTAGAAGCTC
1014256 TTCGAAATTAATCCTTAGAAGCTC
1 TTCGAAATTAATCCTTAGAAGCTC
1014280 TTCGAAA
1 TTCGAAA
1014287 GCATCCATGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.35, C:0.20, G:0.13, T:0.33
Consensus pattern (24 bp):
TTCGAAATTAATCCTTAGAAGCTC
Found at i:1024705 original size:19 final size:18
Alignment explanation
Indices: 1024681--1024743 Score: 73
Period size: 19 Copynumber: 3.7 Consensus size: 18
1024671 AGCGATACAT
1024681 TGTATCGATACAAAACTTA
1 TGTATCGATAC-AAACTTA
1024700 TGTATCGATAC--A---A
1 TGTATCGATACAAACTTA
1024713 TGTATCGATACAACACTTA
1 TGTATCGATACAA-ACTTA
1024732 TGTATCGATACA
1 TGTATCGATACA
1024744 GTTACGGTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 12 0.32
16 2 0.05
19 24 0.63
ACGTcount: A:0.38, C:0.17, G:0.13, T:0.32
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:1024717 original size:32 final size:32
Alignment explanation
Indices: 1024673--1024743 Score: 124
Period size: 32 Copynumber: 2.2 Consensus size: 32
1024663 AGCTTCGTAG
*
1024673 CGATACATTGTATCGATACAAAACTTATGTAT
1 CGATACAATGTATCGATACAAAACTTATGTAT
*
1024705 CGATACAATGTATCGATACAACACTTATGTAT
1 CGATACAATGTATCGATACAAAACTTATGTAT
1024737 CGATACA
1 CGATACA
1024744 GTTACGGTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.38, C:0.18, G:0.13, T:0.31
Consensus pattern (32 bp):
CGATACAATGTATCGATACAAAACTTATGTAT
Found at i:1024725 original size:13 final size:13
Alignment explanation
Indices: 1024699--1024725 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1024689 TACAAAACTT
1024699 ATGTATCGATACA
1 ATGTATCGATACA
1024712 ATGTATCGATACA
1 ATGTATCGATACA
1024725 A
1 A
1024726 CACTTATGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1026030 original size:159 final size:157
Alignment explanation
Indices: 1025387--1027509 Score: 512
Period size: 159 Copynumber: 13.4 Consensus size: 157
1025377 GAACTTAGAC
* * * * *
1025387 TTTA-CAAAAATTGGT-GAGAAG-AAAGCCTTTCTTGCGAAACCAAAGCATTAATATCGTGGATT
1 TTTATCAAAAA-TGGTGGA-AAGAAAAGCATTTCTTGCGAAACCAAAGCATCAATATCATGTATC
* * ** *
1025449 CTAATGAGAAGACTATGTTTATAGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAATAGTCA
64 CTAAAGAGAAGACTATGTTTATA-TGCCTAATCATGAAAAGAATGAAGATTAGTATGAGTAGTCA
*
1025514 TGGTTGTCTTATTTAAGAGACAAACTTTGA
128 TGGTTGTCTTATTTAAGAGACAAACTATGA
* * * * * *
1025544 TTCTATCAATAACGGTGGAAAGAAAAGCATATCTTGCGACACTAAAGCATCAATGTCATGTATCC
1 TT-TATCAAAAATGGTGGAAAGAAAAGCATTTCTTGCGAAACCAAAGCATCAATATCATGTATCC
* * * * * * * * * * *
1025609 TAAAGA-ACGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGAAGACTATTATGAG-AGACA
65 TAAAGAGA-AGACTATGTTTAT-ATGCCTAATCATGAAAAGAATGAAGATTAGTATGAGTAGTC-
* * * * ** *
1025672 ATGTTTGCCCTCTTTAAGAGATGAACTTTGA
127 ATGGTTGTCTTATTTAAGAGACAAACTATGA
* * * ** ** * *
1025703 TTT-TTAGGAAAATAGG-GCAAAGAAATG-ATTTCCTTGTAAAAGAAAATCATCAATATCATTTA
1 TTTATCA--AAAAT-GGTGGAAAGAAAAGCATTT-CTTGCGAAACCAAAGCATCAATATCATGTA
* * * * ***
1025765 TCTTAATA-AGAAGACTATGTTTATTGTGCCTAATCA-CAAAATGAATGAAAATCCTTACT-AG-
62 TCCTAA-AGAGAAGACTATGTTTA-TATGCCTAATCATGAAAA-GAATGAAGATTAGTA-TGAGT
* * * * *
1025826 AATCCAT-GTTTTCCTTATTTAAG-GCATAAAGT-TAAA
123 AGT-CATGGTTGT-CTTATTTAAGAG-ACAAACTAT-GA
* * * *
1025862 CTTTA-CAAAAATTAGTGTGAAA-AAATGCCTTTCTTTCGAAACCAAAGCATCAATATCATGTAT
1 -TTTATCAAAAA-TGGTG-GAAAGAAAAGCATTTCTTGCGAAACCAAAGCATCAATATCATGTAT
** *
1025925 CCTAAAGAGAAGACTATGTTTATATGCCTAATCATGAAAAGAATGGGGATTAGTATGAGTATTCA
63 CCTAAAGAGAAGACTATGTTTATATGCCTAATCATGAAAAGAATGAAGATTAGTATGAGTAGTCA
**
1025990 TGGTTGTCTTATTTAAGAGACAAACTACCA
128 TGGTTGTCTTATTTAAGAGACAAACTATGA
* * * **
1026020 TTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGC-AACACTAAAGCATCAATGTCATGCGTC
1 TT-TATCAAAAATGGTGGAAAGAAAAGCATTTCTTGCGAA-ACCAAAGCATCAATATCATGTATC
* ** * * * * * * * * * *
1026084 CTAATGAGGGGA-AAGTGTTCT-TA-GTTCTCAATCTTCAAAAGAATGGAGACTATTACGA-CAA
64 CTAAAGAGAAGACTA-TGTT-TATATG-CCT-AATCATGAAAAGAATGAAGATTAGTATGAGTAG
* * * ** * *
1026145 TCGATGCTTGTCGTATTTAAGGGATGAATTTTGA
125 TC-ATGGTTGTCTTATTTAAGAGACAAACTATGA
* * * * * ** * * *
1026179 TTT-TAAGGAAAATAGG-GCAAAGAAAAG-ATTCCAATGCAAAAGAAAATCATCAATATTATTTA
1 TTTATCA--AAAAT-GGTGGAAAGAAAAGCATTTC-TTGCGAAACCAAAGCATCAATATCATGTA
* * * * * * ***
1026241 TCATAATGAGGAGAATGTGTTTATA-GCACCTAATCA-CAAAATGAATGAAGATCCTTACT-AG-
62 TCCTAAAGAGAAGACTATGTTTATATG--CCTAATCATGAAAA-GAATGAAGATTAGTA-TGAGT
* * * *
1026302 AATCCATGTTTGTCTCATTT--GAGGCATGAACT-TAGAA
123 AGT-CATGGTTGTCTTATTTAAGAGACA--AACTAT-G-A
* * * * * *
1026339 TTTA-CAAAATTGATGGGAA-AAAAGTC-TTTTTTGCGAAACCAAA-CATCAACATCATGTTTCC
1 TTTATCAAAAATGGTGGAAAGAAAAG-CATTTCTTGCGAAACCAAAGCATCAATATCATGTATCC
* * * * *
1026400 TAATGAGAAGACTATGTTTATGGTGCCTAATCCA-GGAAAGAAT-AGGATTAGTATGAGTATTCA
65 TAAAGAGAAGACTATGTTTAT-ATGCCTAAT-CATGAAAAGAATGAAGATTAGTATGAGTAGTCA
* * * * *
1026463 TGTTTGTCTTATTTAAGACACGAACTTTCA
128 TGGTTGTCTTATTTAAGAGACAAACTATGA
* * ** * * *
1026493 TTCTATCAATAACGGCAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAT-C
1 TT-TATCAAAAATGGTGGAAAGAAAAGCATTTCTTGCGAAACCAAAGCATCAATATCATGTATCC
* * * * * * * * * * * *
1026557 TCAATGA-AGGGAATGTGTTTTTAGTTCCCAATCTTGAAAAGAATGGAGA-CAGTTACGAG-AAT
65 T-AAAGAGA-AGACTATGTTTATA-TGCCTAATCATGAAAAGAATGAAGATTAG-TATGAGTAGT
** ** * ** *
1026619 CAATGCCTACCTTATTTAAGGGATGAACTTTGA
126 C-ATGGTTGTCTTATTTAAGAGACAAACTATGA
* * * * * * * ** * *
1026652 TTT-TAAGGAAAATAAG-GCAAAGAGAA-TATTTTCATGCAAAAGAAAATCATCAATATCATTTA
1 TTTATCA--AAAAT-GGTGGAAAGAAAAGCA-TTTCTTGCGAAACCAAAGCATCAATATCATGTA
* * * * * ** * * * *
1026714 -CAATAATA-AGGAGAATTTGTTTATAGTGCCTAATCA-CAAATTAATGACGATCATTACT-AGA
62 TC-CTAA-AGAGAAGACTATGTTTATA-TGCCTAATCATGAAAAGAATGAAGATTAGTA-TGAGT
* * * * *
1026775 ATTCATGTTTGTCTCATTTGAG-GTAGAAACT-TAGA
123 AGTCATGGTTGTCTTATTTAAGAG-ACAAACTAT-GA
* * *
1026810 CTTTA-CAAAAATTAGTGGGAA-AAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATC
1 -TTTATCAAAAA-TGGTGGAAAGAAAAGCATTTCTTGCGAAACCAAAGCATCAATATCATGTATC
* * * * ** * * * * * *
1026873 CTAACGAGAAGACTATGTTTATGGTTCCTAATCCTGAAAAGAATGGGGATGAATACGACTATTCT
64 CTAAAGAGAAGACTATGTTTAT-ATGCCTAATCATGAAAAGAATGAAGATTAGTATGAGTAGTCA
* * *
1026938 TGTTTGTCTTATTTAGGAGACAAACTTTGA
128 TGGTTGTCTTATTTAAGAGACAAACTATGA
* * * * * * * * * *
1026968 TTTTATCAAAAACGGTAGAAAGAAAACCTTTTCTTGCGACACCCAAGCATTAATGTCAAGAAT-C
1 -TTTATCAAAAATGGTGGAAAGAAAAGCATTTCTTGCGAAACCAAAGCATCAATATCATGTATCC
* *** * * * * * * * *
1027032 TAAA-TGAAGGGAATGTTTCT-TGGTTCCTAATCTTGAGAAGAGTGGAGACTA-T-TGCAATAAT
65 TAAAGAGAAGACTATGTTTATAT-G--CCTAATCATGAAAAGAATGAAGATTAGTATG-AGTAGT
* * ** * * * * *
1027093 CAACGCTTGTCACATTTAAGGGATAAATTTTTA
126 C-ATGGTTGTCTTATTTAAGAGACAAACTATGA
* * ** * * * * * *
1027126 TTT-TAAGGAAAATACG-GCCAAGAAAA-TATTTCCCTGCAAAAACAAATCATCAATATCATTTA
1 TTTATCA--AAAAT-GGTGGAAAGAAAAGCATTT-CTTGCGAAACCAAAGCATCAATATCATGTA
* * * * ** * *** ** * *
1027188 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAAGAATGAAAATCCTTACCA-AAAT
62 TCCTAAAGAGAAGACTATGTTTATA-TGCCTAATCATGAAAAGAATGAAGATTAGTATGAGTAGT
* * *
1027252 CCATGTTTGTCTCATTTAAG-G-CATGAAGGTA-GA
126 -CATGGTTGTCTTATTTAAGAGACA--AA-CTATGA
* * * *
1027285 CTTTA-CATAAATTGGTGG-AA-AAAAGCCTTTCTTTCGAAGCCAAAGCATCAATATCATGTATC
1 -TTTATCA-AAAATGGTGGAAAGAAAAGCATTTCTTGCGAAACCAAAGCATCAATATCATGTATC
* * * * ** **
1027347 CTAAAGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAACAATGGGGATTAGTATGAGTTTTCA
64 CTAAAGAGAAGACTATGTTTAT-ATGCCTAATCATGAAAAGAATGAAGATTAGTATGAGTAGTCA
*
1027412 TGGTTGTCTTATTTAAGAGACAAACTTTGA
128 TGGTTGTCTTATTTAAGAGACAAACTATGA
* * * * * * *
1027442 TTCTACCAAAAACGGTGGAAAGAAAAGCTTTTCCTGCGACACCAAAGCATCAATGTCATCTATCC
1 TT-TATCAAAAATGGTGGAAAGAAAAGCATTTCTTGCGAAACCAAAGCATCAATATCATGTATCC
1027507 TAA
65 TAA
1027510 TAAAGGGAAA
Statistics
Matches: 1392, Mismatches: 433, Indels: 280
0.66 0.21 0.13
Matches are distributed among these distances:
154 4 0.00
155 30 0.02
156 59 0.04
157 255 0.18
158 372 0.27
159 622 0.45
160 48 0.03
161 1 0.00
162 1 0.00
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.31
Consensus pattern (157 bp):
TTTATCAAAAATGGTGGAAAGAAAAGCATTTCTTGCGAAACCAAAGCATCAATATCATGTATCCT
AAAGAGAAGACTATGTTTATATGCCTAATCATGAAAAGAATGAAGATTAGTATGAGTAGTCATGG
TTGTCTTATTTAAGAGACAAACTATGA
Found at i:1027156 original size:474 final size:474
Alignment explanation
Indices: 1024999--1039063 Score: 7689
Period size: 474 Copynumber: 29.3 Consensus size: 474
1024989 GGTATCTATA
* * * * * * *
1024999 GTGCCTAATCATGGAAAGAATGGAGATAAGTATGAGTATACATGTTTGTCTTATTTTAGAGACGA
1 GTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* * * * *
1025064 ACTTTGATTCCACCAAAAATGGTGGAAAGAAAAACTTTTCTTGTGACACCAAAGCATCAATGTCA
66 ACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCA
* * * ** * *
1025129 TCTATCCCAATAAAGGGAAAATGTTGTTGGTACCCAATCTTGAAAAGAATGGAGACTATTACGAT
131 TGTATCCTAATGAAGGGAATGTGTT-TTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGAG
* * * * * *
1025194 TATCAAGGCTT-TCTTATTTAAGGGAAGAACTTTAATTTTAAGGATAATAGGGCAAAGAAAAAAT
195 AATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAATAT
* * * * * * *
1025258 TTTCTTGCAAAAAAAAACCTTCAATATCATTTATCCTAATGAGGAGAAAGTGTTTATAGTGCCTA
260 TTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTA
* * * * **
1025323 ATCACAAAATGAATGAAGATCATTGCTATAATCAATATTTCCCTCATTTGA--CATGAACTTAGA
325 ATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCA-GAACTTAGA
* * * * * *
1025386 CTTTACAAAAATTGGTGAGAAGAAAGCCTTTCTTGCGAAACCAAAGCATTAATATCGTGGATTCT
389 CTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCT
*
1025451 AATGAGAAGACTATGTTTATA
454 AATGAGAAGACTATGTTTATG
* * *
1025472 GTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAATAGTCATGGTTGTCTTATTTAAGAGACAA
1 GTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* * * *
1025537 ACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCATATCTTGCGACACTAAAGCATCAATGTCA
66 ACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCA
* * * *
1025602 TGTATCCTAAAGAACGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGAAGACTATTATGAG
131 TGTATCCTAATGAAGGGAATGTG-TTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGAG
* * * * * *
1025667 AGA-CAATGTTTGCCCTCTTTAAGAGATGAACTTTGATTTTTAGGAAAATAGGGCAAAG-AAATG
195 A-ATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAT-
* * * * * * *
1025730 ATTTCCTTGTAAAAGAAAATCATCAATATCATTTATCTTAATAAGAAGACTATGTTTATTGTGCC
258 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCC
* * * * * *
1025795 TAATCACAAAATGAATGAAAATCCTTACTAGAATCCATGTTT-TCCTTATTTAAGGCATAAAGTT
323 TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGT-CTCATTTGAGGCA-GAACTT
* * * *
1025859 AAACTTTACAAAAATTAGTGTGAAAAAATGCCTTTCTTTCGAAACCAAAGCATCAATATCATGTA
386 AGACTTTACAAAAATTGGTGGGAAAAAA-GCCTTTCTTGCGAAACCAAAGCATCAATATCATGTA
*
1025924 TCCTAAAGAGAAGACTATGTTTAT-
450 TCCTAATGAGAAGACTATGTTTATG
* * *
1025948 ATGCCTAATCATGAAAAGAATGGGGATTAGTATGAGTATTCATGGTTGTCTTATTTAAGAGACAA
1 GTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
*** * * *
1026013 ACTACCATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACTAAAGCATCAATGTCA
66 ACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCA
** * * * * * *
1026078 TGCGTCCTAATGAGGGGAAAGTGTTCTTAGTTCTCAATCTTCAAAAGAATGGAGACTATTACGAC
131 TGTATCCTAATGAAGGGAATGTGTT-TTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGAG
* * * *
1026143 AATCGATGCTTGTCGTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGA-
195 AATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAATAT
* * * **
1026207 TTCCAATGCAAAAGAAAATCATCAATATTATTTATCATAATGAGGAGAATGTGTTTATAGCACCT
260 TTCC-ATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCT
*
1026272 AATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAG
324 AATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCA-GAACTTAG
* * * * * *
1026337 AATTTAC-AAAATTGATGGGAAAAAAGTCTTTTTTGCGAAACCAAA-CATCAACATCATGTTTCC
388 ACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCC
1026400 TAATGAGAAGACTATGTTTATG
453 TAATGAGAAGACTATGTTTATG
* * * * *
1026422 GTGCCTAATCCAGGAAAGAAT-AGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGACACGA
1 GTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* * **
1026486 ACTTTCATTCTATCAATAACGGCAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCA
66 ACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCA
*
1026551 TGTAT-CTCAATGAAGGGAATGTGTTTTTAGTTCCCAATCTTGAAAAGAATGGAGAC-AGTTACG
131 TGTATCCT-AATGAAGGGAATGTG-TTTTGGTTCCCAATCTTGAAAAGAATGGAGACTA-TTACG
* ** * *
1026614 AGAATCAATGCCTACCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAGAAT
193 AGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAT
* * *
1026679 ATTTTCATGCAAAAGAAAATCATCAATATCATTTA-CAATAATAAGGAGAATTTGTTTATAGTGC
258 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATC-CTAATAAGGAGAATGTGTTTATAGTGC
* * * *
1026743 CTAATCAC-AAATTAATGACGATCATTACTAGAATTCATGTTTGTCTCATTTGAGGTAGAAACTT
322 CTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAG-AACTT
*
1026807 AGACTTTACAAAAATTAGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTAT
386 AGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTAT
*
1026872 CCTAACGAGAAGACTATGTTTATG
451 CCTAATGAGAAGACTATGTTTATG
* * * * * * *
1026896 GTTCCTAATCCTGAAAAGAATGGGGATGAATACGACTATTCTTGTTTGTCTTATTTAGGAGACAA
1 GTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* * * * *
1026961 ACTTTGATTTTATCAAAAACGGTAGAAAGAAAACCTTTTCTTGCGACACCCAAGCATTAATGTCA
66 ACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCA
* * * * * * *
1027026 AGAAT-CTAAATGAAGGGAATGT-TTCTTGGTTCCTAATCTTGAGAAGAGTGGAGACTATTGCAA
131 TGTATCCT-AATGAAGGGAATGTGTT-TTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGA
* * ** * * * * *
1027089 TAATCAACGCTTGTCACATTTAAGGGATAAATTTTTATTTTAAGGAAAATACGGCCAAGAAAATA
194 GAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAATA
* *
1027154 TTTCCCTGCAAAA-ACAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
259 TTTCCATGCAAAAGA-AAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCC
* * * * * * **
1027218 TAATCACAAAAAGAATGAAAATCCTTACCAAAATCCATGTTTGTCTCATTTAAGGCATGAAGGTA
323 TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCA-GAACTTA
* * *
1027283 GACTTTACATAAATTGGT-GGAAAAAAGCCTTTCTTTCGAAGCCAAAGCATCAATATCATGTATC
387 GACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATC
*
1027347 CTAAAGAGAAGACTATGTTTATG
452 CTAATGAGAAGACTATGTTTATG
* * * *
1027370 GTGCCTAATCCTAAAAACAATGGGGATTAGTATGAGTTTTCATGGTTGTCTTATTTAAGAGACAA
1 GTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* *
1027435 ACTTTGATTCTACCAAAAACGGTGGAAAGAAAAGCTTTTCCTGCGACACCAAAGCATCAATGTCA
66 ACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCA
* * * * * * * * * *
1027500 TCTATCCTAATAAAGGGAAAGTGTTGTTGATTCCTATTCTTGAAAAAAATGGAGACTGTTACAAT
131 TGTATCCTAATGAAGGGAATGTGTT-TTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGAG
* * *
1027565 AATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGAAAAGAAAAGAT
195 AATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAATAT
* *
1027630 TTCCAT------G-----C--C--T-T-ATTTATCATAATAAGGAGAATATGTTTATAGTGCCTA
260 TTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTA
* ** * * *
1027678 ATCCCAAAATGAATGAAGATCCCTACTAGAATCCATGGTTGCCTCATTTGAGGCATAAACTTAGA
325 ATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCA-GAACTTAGA
* * * * * *
1027743 CTTTACAAAAAATGGTTGGAAAAAAGCCTTTGTTGCGAAAGCAAAGCATTAATATCATATATCCT
389 CTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCT
1027808 AATGAGAAGACTATGTTTATG
454 AATGAGAAGACTATGTTTATG
* * * * *
1027829 GTGCCTAATCCTGAAACGAGTGGGGATTAGTATGAGTATTCCTGATTGTCATATTTACA-AGACA
1 GTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTA-AGAGACA
** * ***
1027893 AACTTTGATTCTATCAAAAGTGGTGGAAACAAAAG-TTTTCTAATGACACCAAAGCATCAATGTC
65 AACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC
** * ** ** *
1027957 ACATATCCTAATGAACGGAATGTGTTTTTGGTTCTGAATCAAGAAAAGAATGGAGACTGTTACGA
130 ATGTATCCTAATGAAGGGAATGTG-TTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGA
* * * **
1028022 GAATCAATGCTTGCCTTATTTAA-GGACGAA-TTTGATTTT-ATGAGAAATAGGGCAAAGAAACG
194 GAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGA-AAATAGGGCAAAGAAAAT
* * * **
1028084 ATTTCCATGCAAAAAAAAAATCATCAATACCATTTATCCTAATAAGGAGAAAGTGTTTATAGTAT
258 ATTTCCATGC-AAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGC
* * * *
1028149 CTAATTACAAAATGAATGAAGATCATTACTAGAATCCGTGTTTGTCTCATTTAAGGCACAAACTT
322 CTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCA-GAACTT
* * * * * *
1028214 AGACTTTAAAAAAATTGGTTGGAACAAAGCC-TTCTTAG-GAAACCAACGCGTCAATATCGTGTA
386 AGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTT-GCGAAACCAAAGCATCAATATCATGTA
* * *
1028277 TCTTTATAAGAAGACTATGTTTATG
450 TCCTAATGAGAAGACTATGTTTATG
* * * * * *
1028302 GTGCCTAATCCTAAAAAGAATTGGGA-TGGTATAACTATTCATGTTTGTCCTATTTAAGAGACAA
1 GTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* * * *
1028366 ATTTTGATTCTATAAAAAACGGTGGAAAGTAAAGCTTTTCTTACGACACCAAAGCATCAATGTCA
66 ACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCA
* * *
1028431 TCTATCCTAATG-AGGGAAAAGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACAA
131 TGTATCCTAATGAAGGG-AATGTG-TTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGA
* * * * * * *
1028495 GAATCAATGCTTGGCTTACTTAAGCGATGAACTTTGATTTTATGGGAAATAGGGCAAAGCAAAGA
194 GAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAATA
* * * * * *
1028560 TTTCCATGCAAAA-AAAAGCATCAACATCATTTATCAC-ATTGAGGAGAATGTGTTAATAATGCC
259 TTTCCATGCAAAAGAAAATCATCAATATCATTTATC-CTAATAAGGAGAATGTGTTTATAGTGCC
* * * *
1028623 TAATCACAAATTGAATGAAGATCCTTCCTAGAATCCATGTTTGTCTCATTTAAGGCATGAACTTA
323 TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCA-GAACTTA
* * * *
1028688 GACTTTACAAAAATTAGTAGGAAAAAAGCCTTTCTTGTGAAACTAAAGCATCAATATCATGTATC
387 GACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATC
* * *
1028753 CCAATAAGAAGACTATGTTTATA
452 CTAATGAGAAGACTATGTTTATG
* * * * * *
1028776 GTGCCTAATCTTGAGAA-AATGGAGATTAATATGATTATTCATGTTTGTCTTATTGAAGAGACAA
1 GTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* ** * * *
1028840 ACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTATGACACCCAGGCATTAATGTCA
66 ACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCA
* * * * * * *
1028905 TTTATCCAAATGAAGGGAATGT-TTCTTGGTTCCTAATCTTGAAAAGAGTAGAGACTGTTGCGAG
131 TGTATCCTAATGAAGGGAATGTGTT-TTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGAG
* * * * * ** *
1028969 AATCGACGCTTGTCATATTTAA-GGATGAATTTTAATTTTACCGAAAATAGGGCCAAGAAAATAT
195 AATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAATAT
* * * * *
1029033 TTTCATGCAAAAAGAAAATCAACAATATCATTTATCCAAATAAAGAGAATGTATTTATAGTGCCT
260 TTCCATGC-AAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCT
* * * * * * *
1029098 AATCACAATATAAATGAAAATAATTACTAGAATCTATGTTTATCTCATTTGAGGCACGAACTTAA
324 AATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCA-GAACTTAG
* * ** * * * *
1029163 ACTTTACAAAAGTTAGTAAGAAGAAAGCCTTTCTTGCGAAACCAAAGTATTAATATCAAGTATCC
388 ACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCC
*
1029228 TAATGAGAAGACAATGTTTATG
453 TAATGAGAAGACTATGTTTATG
* * * *
1029250 TTGCCTAATCCTGAAATGAATGGGGATTAGTATGAATATTCATGGTTGTCTTATTTAAGAGACAA
1 GTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* * * * * * ** *
1029315 ACTTCGATTCTATTAATAACGGTTGCAAGAAAAGCTTTTCTTGCAACACCAAAGTGTCAATGCCA
66 ACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCA
* * * * *
1029380 TCTAT-CTCATTGAAGGAAATGTGTTTTTGTTCCCAATCTTGAAAAGAATGGAGACTATCACGAG
131 TGTATCCT-AATGAAGGGAATGTGTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGAG
* ** * * *
1029444 AATCAATGCCTACCTTACTTAAGGCATGAACTTTGATTTTAATGAAAATAGGGCAAAGAAAATAT
195 AATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAATAT
* * *
1029509 TTCCATGCAAAAAAAAATCATCAATATCATTTATCCTTATAAGGAGAATATGTTTATAGTGCCTA
260 TTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTA
* * * * *
1029574 ATCAC-AAATTAATTAAGATCATTACTAGAATTCATATTTGTCTCGTTTGAGGCAGAAACTTAGA
325 ATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAG-AACTTAGA
* *
1029638 CTTTACAAAAATTAGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCT
389 CTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCT
* *
1029703 AACGAGAAGACTATATTTATG
454 AATGAGAAGACTATGTTTATG
* * * * * ** * *
1029724 ATGCCTAATCCTAAAAAGAATGGGGATGAATATGACTATTCATGTCAGTCTTATTTAGGAGATAA
1 GTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* * *
1029789 ACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACCCAAGCATTAATGTCA
66 ACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCA
* * * * * *
1029854 TGTATCCTAATGAAGGGAA--TG---T--AT-CCAA---AGAAAA-AAGTGGAGAGTGTTGCAAG
131 TGTATCCTAATGAAGGGAATGTGTTTTGGTTCCCAATCTTGAAAAGAA-TGGAGACTATTACGAG
* * * * * * * * *
1029907 AATCGACGCTTGTCATATTTAAGGGATAAATTTTTATTTCAAGGAAAATAGGACCAAGAAAATAT
195 AATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAATAT
* * * *
1029972 TTCAATGCAAAAACAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCTT
260 TTCCATGC-AAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCT
* * * * * * **
1030037 AATCACAAAAAGAATGAAAATCCTTACTAGAATCCATGTTTATCTTATTTGAGGTATGAAGGTAG
324 AATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCA-GAACTTAG
* * *
1030102 ACATTACAAAAATTGGTGGGAAAAAAGCCTTTCTTTC-AAAGCCAAAGCAACAATATCATGTATC
388 ACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAA-CCAAAGCATCAATATCATGTATC
*
1030166 CTAAAGAGAAGACTATGTTTATG
452 CTAATGAGAAGACTATGTTTATG
* * * * * *
1030189 GTGCCTAATCCTGAAAAGAATAGGGATTAGTATAAGTTTTCATGGTGGTCTTATTTAAGAGACGA
1 GTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* * * * *
1030254 ACTTTGATTCTACCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAATAGCAAAGCATCAATGTCA
66 ACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCA
* * *
1030319 TGTATCCTAATGAAGGAAATATGTTTTTGGTTCCCAATCTTGAAAATAATGGAGACTATTACGAG
131 TGTATCCTAATGAAGGGAATGTG-TTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGAG
* * * * * * * ** * *
1030384 TATCGATTCTTGTCATATTTGAGGGATGAATTTTGATTTTATGGAAAATAACGTAAAGAAAACAT
195 AATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAATAT
*
1030449 TTCCATGCAAAAGAAAATCCTCAATATCATTTATCCTAA-AGAGGAGAATGTGTTTATAGT-CCT
260 TTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATA-AGGAGAATGTGTTTATAGTGCCT
* *
1030512 AATCACAAAATGAATGATGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAG
324 AATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCA-GAACTTAG
* * * * * *
1030577 ACTGTACAAAAATTGGTTGGAAGAAAGCC-TTCTTGCGAAACCAAACCATCAATATCTTGTATCT
388 ACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCC
*
1030641 TTATGAGAAGACTATGTTTATG
453 TAATGAGAAGACTATGTTTATG
* * * * * * * *
1030663 GTGCCTAATCCTAAAAAGAAAGGGCATTAGTATGACTATTCACGTTTGTCTTTTTTACGAGAGAA
1 GTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* * * *
1030728 ACATTGATTCTATCAAAAAACAGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAA--TA
66 ACTTTGATTCTATC-AAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC
* * * * * * **** *** * *** ** *
1030791 ATGCTTAGCTTATTTAAAGGATGAACTTTGATTTT-ATGGGAAATAGGGCAAAGAAAATATTTCC
130 ATG--TATCCTA-ATGAAGG--GAA-TGTG-TTTTGGTTCCCAATCTTGAAAAGAATGGA-GACT
* * * * * * *
1030855 ATGCAAAAGAAAATC-AT-CAATATCATTTATTGAATGAGGA-GAA-TGTG--TTTATAGTGCCT
187 AT---TACGAGAATCAATGC-TTGTC--TTATTTAA-G-GGATGAACTTTGATTTTA-AG-G---
* ** ** * ** *** ** * *
1030914 AATCACAAAATG-AATCAAAATCCTTACTAGAATCCATGTTTGTCTCATTTAAGGCATGAACTAA
239 AA--A-ATAGGGCAAAGAAAA----TA-T---TTCCA----TG-CAAAAGAAAATCATCAA-TAT
* ** * * ** * * * * *
1030978 GACTTTA-CAAAAATAGGAGGGAAAAAAGCCTTTCT--TG-CGAAAC-CAAAGCATCAATATCAT
287 CA-TTTATC-CTAATA--A-GG-AGAATGTGTTTATAGTGCCTAATCACAAA--AT-GA-ATGA-
* * * * * * ** * *
1031038 ATATC-TTAATGAGAAGACTATGTTTATGGTGCCTAATCTTCAGAAAATTGGGATTAATATGACT
341 AGATCATTACT-AGAA-TCCATG-TT-T-GT--CTCAT-TTGAG-GCA---GAACT--TA-GACT
** * * ** ** *
1031102 ATT-CATGTTTGTCTTATTTAGGAGGGAAACTTTGATTCTATCAAAATGATG-GAAAAAACCTTT
391 -TTACA--------AAAATT-GGTGGGAAA---AAAGCCTTTC----T--TGCG---AAA-C---
* * * * *
1031165 TGCAACCCCGAAGCATCAATGTCATGTATCCTAATGAAAAGAATGTGTTTTTG
430 --C-A-----AAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
* * * * * * * * * * * *
1031218 GTTCCCAATCTTGAAAAAAAATGGAGACT-GTTTCAAG-AATCAATGTTTGCCTTATTTCAGGGA
1 GTGCCTAATCCTG-AAAAGAATGGGGATTAGTAT-GAGTATTC-ATGTTTGTCTTATTTAAGAGA
* * * * ** * * * ** * ** *
1031281 TAAATTTTGCTTTTAAGGAAAATA-GG-GCAAAGAAAAGATTTCCAAGC-AAAAGATAATCATCA
63 CAAACTTTGATTCT-ATCAAAA-ACGGTGGAAAGAAAAGCTTTTCTTGCGACACCA-AAGCATCA
* * * * * * ** *
1031343 ATATCAT-TGATCATAATTAAGAGAATGTGTTTATAGTACCCAATC-ACAAAATGAATGAAGATC
125 ATGTCATGT-ATCCTAATGAAGGGAATGTGTTT-TGGTTCCCAATCTTGAAAA-GAATGGAGA-C
* * * * * * * ** * *
1031406 T-TTA-GTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACGTTACA--AAAGTTGGTG
186 TATTACG-AGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA-AGGAAAATAGG-G
*** * ** * * * * * * *
1031467 -ACAAGAAAGCCTTT-CTTGCGAAACCAAAGT-TTTAATATCGTGTATCCTAATCAGAAGACA-G
248 CA-AAGAAAATATTTCCATGC-AAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGA-ATG
* * * ** * * * *
1031528 TGTTTATGGTGCCTTATC-CTGAAAA-GAAGGGGGATTAGTA-T-GACTATTCATG--TGTGTCA
310 TGTTTATAGTGCCTAATCAC--AAAATGAATGAAGATCATTACTAGA--ATCCATGTTTGTCTCA
* ** ** * * *
1031587 GTTTAAGAGACA-AACATT-GA-TTCTATCAATTA-CAGTGGAAAGAAAAGCTTTTCTTGCGACA
371 -TTT--GAGGCAGAAC-TTAGACTT-TA-CAAAAATTGGTGGGAA-AAAAGCCTTTCTTGCGAAA
* * * *
1031648 CCAAAGCATCAATGTCATGTAT-CTCAATGA-AGGGAATGTGTTT-TG
429 CCAAAGCATCAATATCATGTATCCT-AATGAGA-AGACTATGTTTATG
* * * * * * * ** ** *
1031693 GTTTCCCAATCTTGAAAAGAATGGAGA-CAGTTACGAG-AATCAATGCCTACCTTATTTAAGGGA
1 G-TGCCTAATCCTGAAAAGAATGGGGATTAG-TATGAGTATTC-ATGTTTGTCTTATTTAAGAGA
** * ** * ** * * * * ** *
1031756 TGAACTTTGATTTTAAGGAAAATA-GG-GCAAAGAAAATATTTCCATGCAAAAGAAAATCATCAA
63 CAAACTTTGATTCT-ATCAAAA-ACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAA
* * * * * ** ** *
1031819 TATAATTTATCCTAAT-AAGGAGAATGTGTTTATAGTGT-CTAATC-ACAAATTAATGAAGA-TC
126 TGTCATGTATCCTAATGAAGG-GAATGTGTTT-TGGT-TCCCAATCTTGAAAAGAATGGAGACT-
* * * * * * * * *
1031880 ATTACTAGAATTC-TTGTTTGTCTCATTTGAGGCA-GAAACTTAGACTTTACA--AAAATTGGTG
187 ATTACGAGAA-TCAATGCTTGTCTTATTTAAGGGATG-AACTTTGATTTTA-AGGAAAA-TAG-G
* *** * ** * * * * * *
1031941 GGAAA-AAAGCCTTT-CTTGCAAAATCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATG
247 GCAAAGAAAATATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTG
* * * *** * * *
1032004 TTTATGGTGCCTAATC-CTAAAAAGAATTG-GGATTGGTA-T-GACTATTCATGTTTCTCTTATT
312 TTTATAGTGCCTAATCAC-AAAATGAA-TGAAGATCATTACTAGA--ATCCATGTTTGTCTCATT
* * * * * * * *
1032065 TAAAAGACA-AACTTCGA-TTCTATCAAAAA-CGGTGGAAAGAAAAGCTTTTCTTCCGACACCAA
373 T--GAGGCAGAACTTAGACTT-TA-CAAAAATTGGTGGGAA-AAAAGCCTTTCTTGCGAAACCAA
* * * * *
1032127 AGCGTCAATGTCATCTATCCTAATGAAGAA-A-AAGTGTTTTTG
433 AGCATCAATATCATGTATCCTAATG-AGAAGACTA-TGTTTATG
* * * * * ** * * * *
1032169 GTTCCTAATCTTGAAAACAATGGAGACT-GTTACAAG-AATCAATGTTTGGCTTATTTAAGGGAT
1 GTGCCTAATCCTGAAAAGAATGGGGATTAG-TATGAGTATTC-ATGTTTGTCTTATTTAAGAGAC
* * * * * * * * ** *
1032232 GAACTTTGATTTTATGGGAAATAA-GGT--AAAGAAAAGATTTCCATGCAAAAGAAAATCATCAA
64 AAACTTTGATTCTAT--CAAA-AACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAA
* * * * * * ** * *
1032294 TATCACT-TATCATAATGAAGAGAATGTGTTTATAGTGCCTAATC-ACAAAATGAATGAATA-TC
126 TGTCA-TGTATCCTAATGAAGGGAATGTGTTT-TGGTTCCCAATCTTGAAAA-GAATGGAGACT-
* * *** * * * ** * *
1032356 CTTACAAGAATCCCGGTTTGTCTCATTT--GGCATGAACTAAGAATTTACA--AAAATTGGTG--
187 ATTACGAGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA-AGGAAAATAGG-GCA
* * * * * * * *
1032415 -GGAGAA-A----C---C-AAAG-----CATCAATATCATGTATCGTAATGAGAAGACTATGTTT
250 AAGAAAATATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTT
* * * * * *
1032465 ATAGTGCCTAATC-CAAAGA-AAATGAGGATTAATA-T-GACTATTCATGTTTGTCTTATTTAGG
315 ATAGTGCCTAATCACAAA-ATGAATGAAGATCATTACTAGA--ATCCATGTTTGTCTCATTT--G
* * * ** * * * * **
1032526 AGACA-AACTTTGA-TTCTGTCAAAAA-CAGT-GAAAAGAAAACCTTTTCTTGCGACACCCAATT
375 AGGCAGAACTTAGACTT-T-ACAAAAATTGGTGGGAAA-AAAGCC-TTTCTTGCGAAACCAAAGC
* * * * * *
1032587 ATTAATGTCATTTATCCAAATGA-AGGGA--ATGTTTCTTG
436 ATCAATATCATGTATCCTAATGAGA-AGACTATGTTT-ATG
* * *** *** * * * * *
1032625 GTTCCTAATCATG-TTTG--TCTTGTTTA-T-TGGAAG-AATCGACGCTTGTCATATTTAAGAGA
1 GTGCCTAATCCTGAAAAGAATGGGGATTAGTAT-G-AGTATTC-ATGTTTGTCTTATTTAAGAGA
** * * * * ** ** * * * * * * * *
1032684 TGAATTTTAATTTTAACGAAAATA-GG-GCCAAGAAAAAATTTCCATGCAAAAGCAAAAACGTTA
63 CAAACTTTGATTCTATC-AAAA-ACGGTGGAAAGAAAAGCTTTTCTTGCGACA-CCAAAGCATCA
* * * * * * * *** * *
1032747 ATATCGTTTATCCAAATG-AGGAGAATGTGTTTATAGTGCCTAATCACAAAAAGAAT-GAAAATA
125 ATGTCATGTATCCTAATGAAGG-GAATGTGTTT-TGGTTCCCAATCTTGAAAAGAATGGAGACT-
* * * * * * * * * * * * **
1032810 ATTACTAGAATCTATGTTTGTCTCATTTGAGGCACGAACATAGACTTTACA--AAAGTTGGTAAA
187 ATTACGAGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA-AGGAAAATAGG-GCA
*** * * * * * * * * * * *
1032873 AAGAAAGCCTTT-CTTGCAAAACCAAAGT-ATTAATGTCGTGTATGCTATTGAGAAGACAATGTG
250 AAGAAAATATTTCCATGCAAAA-GAAAATCATCAATATCATTTATCCTAAT-A-AGGAGAATGTG
* * * * * * * * * *
1032936 TTT-TTGCTTCCCAATCATGAAAA-GAATGGAGA-CTATTACGAGAATCAATGCTTGCCTTATTT
312 TTTATAG-TGCCTAATCA-CAAAATGAATGAAGATC-ATTACTAGAATCCATGTTTGTCTCATTT
* * * * * ** ** * * *
1032998 AAGGGATGAACTTTGATTTTA-AGGAAAATAGG-GCAAAGAAAAGATTTTCATGC-AAA-AAAAT
374 GAGGCA-GAACTTAGACTTTACA--AAAATTGGTGGGAA-AAAAGCCTTTCTTGCGAAACCAAAG
* * * * *
1033059 CATCAATATCATTTATCCCAATGAGGAGACTGTGTTTATT
435 CATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
* * * * * *** * * * *
1033099 ATTCCAAAT-CTTAAAATGAACGAAAACCCTTACTA-GA--ATCCAGGTTTGTCTTA--AAATGA
1 GTGCCTAATCCTGAAAA-GAATGGGGA---TTAGTATGAGTATTCATGTTTGTCTTATTTAA-GA
* * * * *** * * ** * * * *
1033158 -AAAAAGC-CT--TTCTTTCAAAACCAAAGCATTAA-TATCGTCTATTCTAATGAGACGA-CTAT
61 GACAAA-CTTTGATTCTATCAAAAACGGTGGA--AAGAAAAG-CTTTTCT--TGCGAC-ACCAAA
** * * * * * * * * *
1033217 G--TTTATGGTGCCT-AATCTTGAAAAT-AATGGGGAT-TAGTATAACT-ATTCACATTTTTGTC
119 GCATCAAT-GT-CATGTATCCT---AATGAA-GGGAATGT-GT-T--TTGGTTCCCAATCTTG--
* ** * ** * * ***
1033276 TTATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAAAGAAAAGCTTATCTTGTGACCCC
172 --A---AA-AG---AA--TGGAGACTAT----TACGA--G-AATCAATGCTTGTC-T-T-A-TTT
* * * ** * ***
1033341 AAGGCGTTTATA-TCATGTATACTAACG---A-AGGG-AAAG-TGTTATTGGTTCCCAAT-CTTG
215 AAGG-GATGA-ACT-TTG-ATTTTAAGGAAAATAGGGCAAAGAAAATA-T--TT-CC-ATGC---
* * * * * *
1033398 AAAAGAATGGAGA-CTACTACGATAATCAATGGTT-GCCTTATTTAGGGGATTAACTTTGATTT-
268 AAAAGAA---A-ATC-A-T-CAAT-ATC-AT--TTATCC-TA-ATA-AGGA-GAA-TGTG-TTTA
*** ** * * ** *
1033460 TAAG-GAAAATATGGC-AAA-GAA--AATATTTCCATGCAAAAGAAAATCATCAATGTCATT-TA
316 T-AGTGCCTA-ATCACAAAATGAATGAAGA--T-CAT-TACTAG--AATC--C-ATGT--TTGTC
* * * * * * * * *
1033519 TC-TTAATAAGG-AGAATGTTTTTATAGTGCCTAATCACAAAA-TGAAT--G--AAGATCCTTAC
368 TCATT--TGAGGCAGAA-----CT-TAG-ACTTTA-CA-AAAATTG-GTGGGAAAAAAGCCTTTC
* * * *** * * ** * *****
1033577 -T-AGAATCC-ATG--TTTGTCTCATTTGAGGCT--TGAACATAGACTTAACAAAAATTG
421 TTGCGAAACCAAAGCATCAATATCATGT-ATCCTAATG-AGA-AGAC-T-ATGTTTA-TG
*** * ** *** **** * * * * * ** **
1033630 GTGGAAAAAAGCCTTTCATTCAA-AAACA-AAGCATCAATA-TCAAG--TCCCTTA--CGAGAAG
1 GT-G-CCTAATCC-TGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAG-AG
* ** * * ** ** * * *
1033688 ACTATGTTTG-TGGTGCCTAAGCTTGAAAAGAATGG-GGATTATTATGAG-TATTCATTGTTGTC
62 ACAAACTTTGAT--T--CT-A---T-CAAA-AACGGTGGA--AAGAAAAGCTTTTC-TTG-CGAC
*** ** * * ** * *
1033750 TTTTTTAAA--AGTCAAACT-TTG-ATTCTACAAAAAACGGTGGAAAGAAAAGCTTTT-GTTACG
113 ---ACCAAAGCA-TCAATGTCATGTATCCT--AATGAA--G-GGAATG---TG-TTTTGGTT---
* * * * * * ** ** * * * * *
1033810 ACACCAAAGCAT-CAATGTCATGTATCCTAAAGAAGGGAAT--GTGTTTTTCATTCCCAATCTTG
162 -C-CC-AATCTTGAAAAG-AATGGAGACT-ATTACGAGAATCAATGCTTGTC-TT----AT-TT-
* * * * * *** *
1033872 AAAAGAATGGAGAC--TG-TTATAA-GAATCAACGCT-TGCCTTATTTAAAGGATGAACTTT-GA
215 -AAGGGAT-GA-ACTTTGATTTTAAGGAA--AA---TAGGGC--AAAGAAA--AT--A-TTTCCA
*** * * * ** * * ** *
1033931 TTTTAAGGAAAATAGGGCA-AAGAAAAGATTT-TCACGCAA-AA-GAAAAT-CATTAATA-T-CT
265 TGCAAAAGAAAAT----CATCA-ATATCATTTATC-C-TAATAAGGAGAATGTGTTTATAGTGC-
* * * * * * * *
1033989 TTTATCATAATAAAGAGAATGCGTTTATAG-TGCCTAATCACAAAATGAATGAAGATCCCTGCTA
322 CTAATCA-CA-AAA-TGAAT--G---A-AGAT--C--ATTAC----T--A-G-A-ATCCATGTTT
*** * * * *** *******
1034053 GAATC-CATGTTTGTCTCATTTGAGGCAT-GAACTTAGACTTTACAAAAAATGGTGGGAAAAAAG
365 G--TCTCA--TTTGAGGCA---GA-ACTTAG-ACTT-TACAAAAATTGGTG-----GGAAAAAAG
* *** *
1034116 CCTTTCTTGCAAAAGTGAAGCATCAATATCATGTATCCTATTGAGAAGACTATGTTTATG
415 CCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
* * * * *
1034176 GTGCCTCATCCTGAAAAGAATGGGGACTAGTATAAGTGTTCCTAG-TTGTCTTATTTATA-AGAC
1 GTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCAT-GTTTGTCTTATTTA-AGAGAC
* *
1034239 AAACTTTGATTCTATCAAAAACGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATTT
64 AAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGT
* * * * *
1034304 CATGTATCCTAATGAACGAAATGTGTTTTTAGTTCCCAATCTTGAAAA-AAGTGAAGACTGTTAC
129 CATGTATCCTAATGAAGGGAATGTG-TTTTGGTTCCCAATCTTGAAAAGAA-TGGAGACTATTAC
* *
1034368 GAGAATCAATGCTTG-CATTATTTAAGAGATGAA-TATTGATTTTAGGGAAAATAGGGC-AA-AA
192 GAGAATCAATGCTTGTC-TTATTTAAGGGATGAACT-TTGATTTTAAGGAAAATAGGGCAAAGAA
* * * * * * * *
1034429 AAGATTTCCATGC-AACGAAAATCATCAGTATCA-TTATCTTATTGAGGAGATTGTGTTTATTGT
255 AATATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGT
* * *
1034492 TCCTAATCACAAAAGGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAAC
320 GCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCA-GAAC
* *
1034557 TTAGACTCTT-CAAAAATTGGTGGGAAAAAA-CCTTTCTTGCGAAAGCAAAGCATTAATATCATG
384 TTAGACT-TTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATG
* * *
1034620 AATCCTTATGAGAAGACTATGTTTAAG
448 TATCCTAATGAGAAGACTATGTTTATG
* * * * * **
1034647 GTGCCTAATCCTTAAAAGATTGGGGAATAGTATGAGTACTCATGTTTTTCTTATTTAAGAGATGA
1 GTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* * * * *
1034712 ACATTGATTCTATCAAAAATGGTGGAAAGAAAAACCTTTCTTGCGGCACCAAAGCATCAATGTCA
66 ACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCA
* * * * * * * * * *
1034777 TCTATCTTAATGAAGGGAAAGTGATTTCGGTTCCCAATCTCGAAAACAATTGTGACTGTTATGAG
131 TGTATCCTAATGAAGGGAATGTG-TTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGAG
* * * * * * * * *
1034842 AATCAAAGATTGCCTCATTTATGGGATGAATTTTGATTTTAAGGATAATAGGGTAAAGAAAAGAT
195 AATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAATAT
* * * * * * *
1034907 TTTCATGAAAAATAAAA-CATTCAATATCATTTATCCTAATGAGGAAAAAGTGTTTATAGTGCCA
260 TTCCATGCAAAAGAAAATCA-TCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCT
* *
1034971 AATCACAAAATGACT-AAGGATCATTACTAGAATCCATGTTTGTCACATTTGAGGCACGAACTTA
324 AATCACAAAATGAATGAA-GATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCA-GAACTTA
* * ** * * * *
1035035 GACTTTACAAAAATTACG-GAGACGAAAGCATTTCTTGCAAAACCAAAGCATTAATATCGTGTAT
387 GACTTTACAAAAATT-GGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTAT
* **
1035099 CCCAATGAGAAGACTATGTTTACA
451 CCTAATGAGAAGACTATGTTTATG
* ** * * * * ** *
1035123 GTGCCTAATCTTGAAAAGAATGCAGATTAGCATGACTATTCATGTTTTTCATATTTGGGAAACAA
1 GTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* * * * *
1035188 GCTTTTATTCTATAAAAAATGATGGAAAGAAAAGCTTTTCTTGAC-ACACCAAAGCATCAATGTC
66 ACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTG-CGACACCAAAGCATCAATGTC
* ** * *
1035252 ATGCATCCTGAA-GAACAGAATGTGTTTTTGGTTCCCAATCATGAAAAGAATGAAGACTATTACG
130 ATGTATCCT-AATGAAGGGAATGTG-TTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACG
* * * * * *
1035316 AGAAACAACGCTTGCCATATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAG
193 AGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAT
* * * *
1035381 ATTTTCATGTAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGATTGTGTTTATTGTG-C
258 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCC
* * * **
1035445 TGAATCACAAAATGAATGAAAATCCTTAGTAGAATCCATGTTTGTCTCATTTGAGGCATGAAGAT
323 T-AATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCA-GAACTT
* * * *
1035510 AGACTTTATAAAAATTTGTGGGAAAAAAAGCCTTTCTTTCAAAACCAAAGCATCAATATCATGTA
386 AGACTTTACAAAAATTGGTGGG-AAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTA
* *
1035575 TCCTAAAGAAAAGACTATGTTTATG
450 TCCTAATGAGAAGACTATGTTTATG
* * * * * * *
1035600 GTGCCTAATCCTGAAAGGAAGGGGGATTAGTATAAGTATTCACGGTTGTCTTATTTAAAAGGCAA
1 GTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* * * *
1035665 ACTTTGATTCTATCTAAAACGGTGGAAATAACAGTTTTTCTTGC-ACAACCAAAGCATCAATGTC
66 ACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGAC-ACCAAAGCATCAATGTC
* * * * * *
1035729 ATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATCTTGAACAGAATGGAGACTGTTTCAA
130 ATGTATCCTAATGAAGGGAATGTGTT-TTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGA
* * * * * *
1035794 TAATCGATTCTTG-CTATATTTAAGGGATGAAATTTAATATTAAGGAAAATAGGGCAAAGAAAAT
194 GAATCAATGCTTGTCT-TATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAT
* ** * ***
1035858 ATTTCCATGTAAAAGAAAATTGTCAATATCATTTATCATAGCGAGGAGAATGTGTTTATAGTGCC
258 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCC
* * * * *
1035923 CAATCACAAAATGAATGAAGATCATTCCTAGAATCCATGCTTGTCTCATTTGAGGCATAAACCTA
323 TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCA-GAACTTA
*
1035988 GACTTT--AAAAATTGGTGGGAAAAAAGCCTTTCTTGCGTAACCAAAGCATCAATATCATGTATC
387 GACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATC
*
1036051 CTAATGAGAAGACTATATTTATG
452 CTAATGAGAAGACTATGTTTATG
* * * * * *
1036074 GTGCCTAATCCTAAAAAGAATGGGGATGAATATGACTATGCATGTTTGTCTTATTTAGGAGACAA
1 GTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* * * * *
1036139 ACTTTGATTCTAT-AAAATACAGTGGAAAAAAAAACCTTTTCTTGCGACACCCAAGCATTAATGT
66 ACTTTGATTCTATCAAAA-ACGGTGG-AAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGT
* * * * * * ** * *
1036203 CATGTGTCCAAATGAAAGGAA--TG---T--AT-CCAA---AGAAAAGAGTGGAGGTTGTTGCGA
129 CATGTATCCTAATGAAGGGAATGTGTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGA
* * * *
1036257 GAATCAATGCTTGTCATATTTAAGGGAT-AAATTATTATTTTAAGGAAAATAGGGCCAAGAAAAT
194 GAATCAATGCTTGTCTTATTTAAGGGATGAACTT-TGATTTTAAGGAAAATAGGGCAAAGAAAAT
* * * *
1036321 GTTTCCAAGCAAAAATAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
258 ATTTCCATGC-AAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGC
* * * * * * * * **
1036386 TTAATCACAAAAAGAATGAAAATCCTTACTAGAATCCATATTTGTCTTACTTGA-GCCGTAAAGG
322 CTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAG--AACT
* * *
1036450 TAGACTTTGA-AAAAAATGGTGGGAAAAAAGCCTTTCTTTCGAAGCCAAAGCATCAATATCATGT
385 TAGACTTT-ACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGT
*
1036514 ATCCTAAAT-AAAAGACTATGTTTATG
449 ATCCT-AATGAGAAGACTATGTTTATG
* *
1036540 GTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTTTTCATG---G------TTAAGAGACGA
1 GTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* * *
1036596 ACTTTGATTCTACCAAAAATGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCA
66 ACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCA
* * ** * * * * * * *
1036661 TCTATGCTAATGGTGAGAAAGTGTTGTTGGTTCCTATTCTTGAAAAAAATTGGAAACTGTTACGA
131 TGTATCCTAATGAAGGGAATGTGTT-TTGGTTCCCAATCTTGAAAAGAA-TGGAGACTATTACGA
* * * * *
1036726 TAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGCAAAATAGGGAAAAGAAAAGA
194 GAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAATA
* * * *
1036791 TTTCCATGCAAAAGAAAATCATCAATATCATTTATCATAATAAGGACAATGTTTTTATAGTGCCG
259 TTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCT
* ** *
1036856 AATCCCAAAATGAATGAAGATCCCTACTAGAATCCATGTTTGTC-CTATCTGAGGCATGAACTTA
324 AATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTC-ATTTGAGGCA-GAACTTA
* * * * * * *
1036920 GACTTTATAAAAAAATGGTTGGAAAAAAACCTTTCTTGCGAAAGCAAAGCATTAATATCAGGTAT
387 GACTTTA-CAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTAT
1036985 CCTAATGAGAAGACTATGTTTATG
451 CCTAATGAGAAGACTATGTTTATG
* * * **
1037009 GTGCCTAATCC-AAAAATGAATGGGGATTAGTATGAGTATTCCTGGTTAACTTATTTACA-AGAC
1 GTGCCTAATCCTGAAAA-GAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTA-AGAGAC
** * *
1037072 AAACTTTGATTCTATCAAAAACATTGGAAAGAAAAGCTTTTCTTACGACAACAAAGCATCAATGT
64 AAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGT
** ** * * *
1037137 CACATATCCTAATGAACAGAATGTGTTTTTGGTTCCCAATCGTGAAAAGAATAGAGACTATTACT
129 CATGTATCCTAATGAAGGGAATGTG-TTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACG
* * * *
1037202 AGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTCAAGGAAAATAAGGCAAAGAAAAG
193 AGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAT
* * * * * *
1037267 ATTTTCATGCAAAA-AAAATCATCAATATCCTTTATCCTAATGAGGAGATTGTGTTTATTGTTCC
258 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCC
* * * * * *
1037331 TAATCTCAAAATGAACGAAAATCCTTGCTAGAATCTATGTTTGTCTCATTTGAGGCATGAACTTA
323 TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCA-GAACTTA
* * * * * * *
1037396 GACTTTACAAAAATTGGTAGGAAAAAATCCTTTCTTTCAAAACCAAAGCATTAATATCGTCTATC
387 GACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATC
* *
1037461 CTAGTGAGACGACTATGTTTATG
452 CTAATGAGAAGACTATGTTTATG
* * * *
1037484 GTGCCTAATCTTGAAAATAATGGGGATTAGTATAACTATTAACA-GTTTTGTCTTATTTAAGAGA
1 GTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATT--CATG-TTTGTCTTATTTAAGAGA
* * * * * * *
1037548 CAAACTTTGATTCTATCAAAAATGATGGAAAGAAAAGCTTATCTTGTGACCCCAAAGCGTCTATG
63 CAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATG
* * * *
1037613 CCATGTATCCTAATGAAGGGAAAGTGTTATTGGTTCCCATTCTTGAAAAGAATGGAGACTACTAC
128 TCATGTATCCTAATGAAGGGAATGTGTT-TTGGTTCCCAATCTTGAAAAGAATGGAGACTATTAC
* * * * * *
1037678 GATAATCAATGGC-TGCCTTGTTTAAGGAATGACCTTTGATTTTAAGGAAAATATGGCAAAGAAA
192 GAGAATCAAT-GCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAA
* *
1037742 ATATTTCCATGCAAAAGAAAATCATCAATGTCATTTATCCTAATGAGGAGAATGTGTTTATAGTG
256 ATATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTG
*
1037807 CTTAATCACAAAATGAATGAAGATTC-TTACTAGAATCCATGTTTGTCTCATTTGAGGCTTA-AA
321 CCTAATCACAAAATGAATGAAGA-TCATTACTAGAATCCATGTTTGTCTCATTTGAGGC--AGAA
* * * * *
1037870 CATAGACTTAACAAAAATTGGTGGGAAAAAAGCCTTTCATT-CAAAAACAAAGCATCAATATCAA
383 CTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTC-TTGCGAAACCAAAGCATCAATATCAT
* * * *
1037934 GTACCCTTACGAGAAGACTATGTTTGTG
447 GTATCCTAATGAGAAGACTATGTTTATG
** * * *
1037962 GTGCCTAATCCAAAAAAGAATGAGGATTAGTATGAGTATTCATAG-TTGTCTTATTTAAAAGTCA
1 GTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCAT-GTTTGTCTTATTTAAGAGACA
* * *
1038026 AACTTTGATTCTATCAAAAACGGTGGAAAAAAAAGTTTTTCTTGCGACATCAAAGCATCAATGTC
65 AACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC
* * ** *
1038091 ATGTATCCAAAAGAAGGGAATGTGTTTTTCATTCCCAATCTTGAAAAGAATGGAGACTGTTACGA
130 ATGTATCCTAATGAAGGGAATGTG-TTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGA
** ** *
1038156 GAATCAATGCTTACCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAATGCAAAGAAAAGA
194 GAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAATA
* *
1038221 TTTCCATGTAAAAGAAAATCATTAATAT-ATTTTATCGC-AATAAGGAGAATGTGTTTATAGTGC
259 TTTCCATGCAAAAGAAAATCATCAATATCA-TTTATC-CTAATAAGGAGAATGTGTTTATAGTGC
* ** * *
1038284 CTAATCAAAAAATGAATGAAGATCCCTACTGGAATCCATGTTTGTCTTATTTGAGGCATGAACTT
322 CTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCA-GAACTT
** * * *
1038349 AGACTTTACAAAAAACGGTAGGAAAAAAGCCTTTCTTGCAAAAACAAAGCATCAATATCATGTAT
386 AGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTAT
* *
1038414 CATAATGAAAAGACTATGTTTATG
451 CCTAATGAGAAGACTATGTTTATG
* * * * ** *
1038438 GTGCCAAATCCTGAAAAGAATAGGGATTAGTATAAGTATTCCTAATTCTCTTATTTACA-AGACA
1 GTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTA-AGAGACA
* * * * * *
1038502 AACTTTAATTTTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCTAAACCAAGGCATCAATTTC
65 AACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC
* * * * * ** *
1038567 ATGTATCCTAAAGAACGGAATGTGTTTTTGGTT-CCACATCTTGAAAAGAATGAAAATTGCTATG
130 ATGTATCCTAATGAAGGGAATGTG-TTTTGGTTCCCA-ATCTTGAAAAGAATGGAGACTATTACG
*
1038631 AGAATCAATGCTTGCCTTATTT-A---A-GAACTTTGATTTT-AGGAAAAATAGGGCAAAGAAAA
193 AGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGG-AAAATAGGGCAAAGAAAA
* * * * * ** * *
1038690 GATTTCCATGCAAAA-AAAATCATCAATATCATTTATCTTATTGAGGAGATTCCGTTTATTGTTC
257 TATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGC
*
1038754 CTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTT
322 CTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCA-GAACTT
* * * * *
1038819 AGACTCTT-CAAAAATTGGCGGG-AAAAAGTCTTTCTTGCGAAACCAAAGCGTTAATATCATGAA
386 AGACT-TTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTA
* *
1038882 CCCTTATGAGAAGACTATGTTTATG
450 TCCTAATGAGAAGACTATGTTTATG
* * * * * * * **
1038907 GTGCCTAATCTTTAAAAGAATGGGGAATAGTATGAGAACTCACGTTTGTCTTATTTAATAGATGA
1 GTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* * * * *
1038972 ACTTTAATTCTATCAAAAACGATGGAAAGAAAAACCTTTCTTGCGGCACCAAAGCATCAATGTCA
66 ACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCA
* *
1039037 TCTATCCTAATGAAGGGAAAGTGTTTT
131 TGTATCCTAATGAAGGGAATGTGTTTT
1039064 CGATTCATTT
Statistics
Matches: 10553, Mismatches: 2307, Indels: 1469
0.74 0.16 0.10
Matches are distributed among these distances:
451 1 0.00
452 7 0.00
453 64 0.01
454 71 0.01
455 14 0.00
456 131 0.01
457 127 0.01
458 253 0.02
459 153 0.01
460 2 0.00
462 9 0.00
463 153 0.01
464 166 0.02
465 248 0.02
466 118 0.01
467 12 0.00
468 121 0.01
469 356 0.03
470 124 0.01
471 302 0.03
472 203 0.02
473 930 0.09
474 1731 0.16
475 1367 0.13
476 1625 0.15
477 809 0.08
478 338 0.03
479 30 0.00
480 7 0.00
481 17 0.00
482 10 0.00
483 12 0.00
484 12 0.00
485 4 0.00
486 5 0.00
487 4 0.00
488 9 0.00
489 5 0.00
490 4 0.00
491 1 0.00
492 5 0.00
493 7 0.00
495 1 0.00
496 13 0.00
497 2 0.00
498 6 0.00
499 9 0.00
500 5 0.00
501 14 0.00
502 12 0.00
503 26 0.00
504 12 0.00
505 19 0.00
506 11 0.00
507 24 0.00
508 16 0.00
509 8 0.00
510 7 0.00
511 3 0.00
512 5 0.00
513 7 0.00
514 5 0.00
515 11 0.00
516 9 0.00
517 6 0.00
518 15 0.00
519 18 0.00
520 14 0.00
521 18 0.00
522 19 0.00
523 11 0.00
524 11 0.00
525 22 0.00
526 26 0.00
527 25 0.00
528 28 0.00
529 21 0.00
530 27 0.00
531 20 0.00
532 13 0.00
533 21 0.00
534 14 0.00
535 15 0.00
536 23 0.00
537 10 0.00
538 17 0.00
539 22 0.00
540 28 0.00
541 25 0.00
542 10 0.00
543 19 0.00
544 5 0.00
545 20 0.00
546 14 0.00
547 14 0.00
548 16 0.00
549 28 0.00
550 14 0.00
551 11 0.00
552 12 0.00
554 8 0.00
555 76 0.01
556 40 0.00
557 5 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (474 bp):
GTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
ACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCA
TGTATCCTAATGAAGGGAATGTGTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGA
ATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAATATT
TCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAA
TCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAGAACTTAGACT
TTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAA
TGAGAAGACTATGTTTATG
Found at i:1031853 original size:475 final size:474
Alignment explanation
Indices: 1030790--1032934 Score: 2340
Period size: 475 Copynumber: 4.6 Consensus size: 474
1030780 AAGCATCAAT
* * * *
1030790 AATGCTTAG-CTTATTTAAAGGATGAACTTTGATTTTATGGGAAATAGGGCAAAGAAAATATTTC
1 AATGCTT-GCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTC
*
1030854 CATGCAAAAGAAAATCATCAATATCATTTAT--TGAATGAGGAGAATGTGTTTATAGTGCCTAAT
65 CATGCAAAAGAAAATCATCAATATCATTTATCAT-AATAAGGAGAATGTGTTTATAGTGCCTAAT
* * * * *
1030917 CACAAAATGAATCAAAATCCTTACTAGAATCCATGTTTGTCTCATTTAAGGCATGAACTAAGACT
129 CACAAAATGAATGAAAATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACT
* * * * * *
1030982 TTACAAAAATAGGAGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATATATCTTAA
194 TTACAAAAATTGGTGAGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAA
* * *
1031047 TGAGAAGACTATGTTTATGGTGCCTAATCTTCAGAA-AATTGGGATTAATATGACTATTCATGTT
259 TGAGAAGACTATGTTTATGGTGCCTAATCCT-AAAAGAATGGGGATTAATATGACTATTCATGTT
* ** ** * *
1031111 TGTCTTATTTAGGAGGGAAACTTTGATTCTATCAAAATGA-TGG-AA-AAAA-C-CTT-TTGCAA
323 TGTC-TATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGA
* * *
1031170 CCCCGAAGCATCAATGTCATGTATCCTAATGAAAAGAATGTGTTTTTGGTTCCCAATCTTGAAAA
387 CACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGTTCCCAATCTTG-AAA
* * *
1031235 AAAATGGAGACTGTTTCAAGAATC
451 AGAATGGAGACAGTTACAAGAATC
* * * * *
1031259 AATGTTTGCCTTATTTCAGGGATAAATTTTGCTTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
1 AATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
* * * * *
1031324 AAGCAAAAGATAATCATCAATATCATTGATCATAATTAA-GAGAATGTGTTTATAGTACCCAATC
66 ATGCAAAAGAAAATCATCAATATCATTTATCATAA-TAAGGAGAATGTGTTTATAGTGCCTAATC
* * * *
1031388 ACAAAATGAATGAAGATCTTTAGTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACGT
130 ACAAAATGAATGAAAATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTT
* * ** * *
1031453 TACAAAAGTTGGTGACAAGAAAGCCTTTCTTGCGAAACCAAAGTTTTAATATCGTGTATCCTAAT
195 TACAAAAATTGGTGAGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAAT
* * * * *
1031518 CAGAAGAC-AGTGTTTATGGTGCCTTATCCTGAAAAGAAGGGGGATTAGTATGACTATTCATGTG
260 GAGAAGACTA-TGTTTATGGTGCCTAATCCT-AAAAGAATGGGGATTAATATGACTATTCATGTT
* **
1031582 TGTC-AGTTTAAGAGACAAACATTGATTCTATCAATTACAGTGGAAAGAAAAGCTTTTCTTGCGA
323 TGTCTA-TTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGA
*
1031646 CACCAAAGCATCAATGTCATGTAT-CTCAATGAAGGGAATGTG-TTTTGGTTTCCCAATCTTGAA
387 CACCAAAGCATCAATGTCATGTATCCT-AATGAAGAGAATGTGTTTTTGG-TTCCCAATCTTGAA
*
1031709 AAGAATGGAGACAGTTACGAGAATC
450 AAGAATGGAGACAGTTACAAGAATC
* * *
1031734 AATGCCTACCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAATATTTCC
1 AATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
* * *
1031799 ATGCAAAAGAAAATCATCAATATAATTTATCCTAATAAGGAGAATGTGTTTATAGTGTCTAATCA
66 ATGCAAAAGAAAATCATCAATATCATTTATCATAATAAGGAGAATGTGTTTATAGTGCCTAATCA
* * * *
1031864 C-AAATTAATGAAGATCATTACTAGAATTCTTGTTTGTCTCATTTGAGGCA-GAAACTTAGACTT
131 CAAAATGAATGAAAATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACG-AACTTAGACTT
* * * *
1031927 TACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAATCAAAGCATCAATATCATGTATCCTAAT
195 TACAAAAATTGGTGAGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAAT
* **
1031992 GAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATTGGGATTGGTATGACTATTCATGTTT
260 GAGAAGACTATGTTTATGGTGCCTAATCCT-AAAAGAATGGGGATTAATATGACTATTCATGTTT
* * * * *
1032057 CTCTTATTTAAAAGACAAACTTCGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTCCGAC
324 GTC-TATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGAC
* * * * * *
1032122 ACCAAAGCGTCAATGTCATCTATCCTAATGAAGAAAAAGTGTTTTTGGTTCCTAATCTTGAAAAC
388 ACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGTTCCCAATCTTGAAAAG
*
1032187 AATGGAGACTGTTACAAGAATC
453 AATGGAGACAGTTACAAGAATC
* * * * * *
1032209 AATGTTTGGCTTATTTAAGGGATGAACTTTGATTTTATGGGAAATAAGGTAAAGAAAAGATTTCC
1 AATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
*
1032274 ATGCAAAAGAAAATCATCAATATCACTTATCATAATGAA-GAGAATGTGTTTATAGTGCCTAATC
66 ATGCAAAAGAAAATCATCAATATCATTTATCATAAT-AAGGAGAATGTGTTTATAGTGCCTAATC
* * * ** * * *
1032338 ACAAAATGAATGAATATCCTTACAAGAATCCCGGTTTGTCTCATTT--GGCATGAACTAAGAATT
130 ACAAAATGAATGAAAATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTT
*
1032401 TACAAAAATTGGTG-G--G--A-----------GAAACCAAAGCATCAATATCATGTATCGTAAT
195 TACAAAAATTGGTGAGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAAT
* * *
1032450 GAGAAGACTATGTTTATAGTGCCTAATCC-AAAGAAAATGAGGATTAATATGACTATTCATGTTT
260 GAGAAGACTATGTTTATGGTGCCTAATCCTAAA-AGAATGGGGATTAATATGACTATTCATGTTT
* * * *
1032514 GTCTTATTTAGGAGACAAACTTTGATTCTGTCAAAAACAGTGAAAAGAAAACCTTTTCTTGCGAC
324 GTC-TATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGAC
* ** * * * * * * * ***
1032579 ACCCAATTATTAATGTCATTTATCCAAATGAAGGGAATGT-TTCTTGGTTCCTAATCATG-TTTG
388 ACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGTTCCCAATCTTGAAAAG
** * *** **
1032642 TCTTG-TTTA-TTGGAAGAATC
453 AATGGAGACAGTTACAAGAATC
* * * * * * * * * *
1032662 GACGCTTGTCATATTTAAGAGATGAATTTTAATTTTAACGAAAATAGGGCCAAGAAAAAATTTCC
1 AATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
* * * * *
1032727 ATGCAAAAGCAAAAACGTTAATATCGTTTATCCA-AATGAGGAGAATGTGTTTATAGTGCCTAAT
66 ATGCAAAAG-AAAATCATCAATATCATTTAT-CATAATAAGGAGAATGTGTTTATAGTGCCTAAT
* * * *
1032791 CACAAAAAGAATGAAAATAATTACTAGAATCTATGTTTGTCTCATTTGAGGCACGAACATAGACT
129 CACAAAATGAATGAAAATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACT
* * * * * * * * * *
1032856 TTACAAAAGTTGGTAAAAAGAAAGCCTTTCTTGCAAAACCAAAGTATTAATGTCGTGTATGCTAT
194 TTACAAAAATTGGTGAGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAA
*
1032921 TGAGAAGACAATGT
259 TGAGAAGACTATGT
1032935 GTTTTTGCTT
Statistics
Matches: 1400, Mismatches: 229, Indels: 91
0.81 0.13 0.05
Matches are distributed among these distances:
453 69 0.05
454 82 0.06
455 4 0.00
456 45 0.03
457 112 0.08
458 57 0.04
459 1 0.00
461 1 0.00
468 1 0.00
469 84 0.06
470 188 0.13
471 34 0.02
472 38 0.03
473 6 0.00
474 198 0.14
475 381 0.27
476 99 0.07
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (474 bp):
AATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
ATGCAAAAGAAAATCATCAATATCATTTATCATAATAAGGAGAATGTGTTTATAGTGCCTAATCA
CAAAATGAATGAAAATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT
ACAAAAATTGGTGAGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG
AGAAGACTATGTTTATGGTGCCTAATCCTAAAAGAATGGGGATTAATATGACTATTCATGTTTGT
CTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGACACC
AAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAAT
GGAGACAGTTACAAGAATC
Found at i:1035216 original size:476 final size:474
Alignment explanation
Indices: 1033156--1039063 Score: 6540
Period size: 476 Copynumber: 12.5 Consensus size: 474
1033146 GTCTTAAAAT
* * * * * *
1033156 GAAAAAAGCCTTTCTTTCAAAACCAAAGCATTAATATCGTCTATTCTAATGAGACGACTATGTTT
1 GAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTT
* * * * *
1033221 ATGGTGCCTAATCTTGAAAATAATGGGGATTAGTATAACTATTCACATTTTTGTCTTATTTAAGA
66 ATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATT--CATGTTTGTCTTATTT-AGA
* * * * * * * **
1033286 GACAAACTTTGATTCTATCAAAAACGATGGAAAGAAAAGCTTATCTTGTGACCCCAAGGCGTTTA
128 AACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAA
* * * * **
1033351 TATCATGTATACTAACGAAGGGAAAGTGTTATTGGTTCCCAATCTTGAAAAGAATGGAGACTACT
193 TGTCATGTATCCTAATGAAGGGAAAGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTT
* * * * *
1033416 ACGATAATCAATGGTTGCCTTATTTAGGGGATTAACTTTGATTTTAAGGAAAATATGGCAAAGAA
258 ACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAA
* * * * * *
1033481 AATATTTCCATGCAAAAGAAAATCATCAATGTCATTTATCTTAATAAGGAGAATGTTTTTATAGT
323 AAGATTTCCATGAAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGT
*
1033546 GCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCTTGAAC
388 GCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAAC
* * *
1033611 ATAGACTTAACAAAAATTGGTG
453 TTAGACTTTACAAAAATTGGGG
* * * * *
1033633 GAAAAAAGCCTTTCATT-CAAAAACAAAGCATCAATATCAAGT-CCCTTACGAGAAGACTATGTT
1 GAAAAAAGCCTTTC-TTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTT
* * * * *
1033696 TGTGGTGCCTAAGCTTGAAAAGAATGGGGATTATTATGAGTATTCAT-TGTTGTCTTTTTTA-AA
65 TATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGT-TTGTCTTATTTAGAA
* *
1033759 AGTCAAACTTTGATTCTA-CAAAAAACGGTGGAAAGAAAAGCTTTTGTTACGACACCAAAGCATC
129 A--CAAACTTTGATTCTATC-AAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
* * **
1033823 AATGTCATGTATCCTAAAGAAGGGAATGTGTTTTTCATTCCCAATCTTGAAAAGAATGGAGACTG
191 AATGTCATGTATCCTAATGAAGGGAAAGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTG
** * *
1033888 TTATAAGAATCAACGCTTGCCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
256 TTACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
* * * * * * * * *
1033953 AAAAGATTTTCACGCAAAAGAAAATCATTAATATCTTTTATCATAATAAAGAGAATGCGTTTATA
321 AAAAGATTTCCATGAAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* *
1034018 GTGCCTAATCACAAAATGAATGAAGATCCCTGCTAGAATCCATGTTTGTCTCATTTGAGGCATGA
386 GTGCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCATGA
*
1034083 ACTTAGACTTTACAAAAAATGGTGG
451 ACTTAGACTTTACAAAAATTGG-GG
*** *
1034108 GAAAAAAGCCTTTCTTGCAAAAGTGAAGCATCAATATCATGTATCCTATTGAGAAGACTATGTTT
1 GAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTT
* * * * * *
1034173 ATGGTGCCTCATCCTGAAAAGAATGGGGACTAGTATAAGTGTTCCTAG-TTGTCTTATTTATAAG
66 ATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCAT-GTTTGTCTTATTTAGAA-
*
1034237 ACAAACTTTGATTCTATCAAAAACGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAAT
129 ACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAAT
* * * *
1034302 TTCATGTATCCTAATGAA-CGAAATGTGTTTTTAGTTCCCAATCTTGAAAA-AAGTGAAGACTGT
194 GTCATGTATCCTAATGAAGGGAAA-GTGTTTTTGGTTCCCAATCTTGAAAAGAA-TGGAGACTGT
* * *
1034365 TACGAGAATCAATGCTTGCATTATTTAAGAGATGAA-TATTGATTTTAGGGAAAATAGGGC-AA-
257 TACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACT-TTGATTTTAAGGAAAATAGGGCAAAG
* * * * * * *
1034427 AAAAGATTTCCATG-CAACGAAAATCATCAGTATCA-TTATCTTATTGAGGAGATTGTGTTTATT
321 AAAAGATTTCCATGAAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* *
1034490 GTTCCTAATCACAAAAGGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCATGA
386 GTGCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCATGA
1034555 ACTTAGACTCTT-CAAAAATTGGTGG
451 ACTTAGACT-TTACAAAAATTGG-GG
* * * * *
1034580 GAAAAAA-CCTTTCTTGCGAAAGCAAAGCATTAATATCATGAATCCTTATGAGAAGACTATGTTT
1 GAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTT
* * * * * * *
1034644 AAGGTGCCTAATCCTTAAAAGATTGGGGAATAGTATGAGTACTCATGTTTTTCTTATTTAAGAGA
66 ATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTT-AGAAA
** * * * * *
1034709 TGAACATTGATTCTATCAAAAATGGTGGAAAGAAAAACCTTTCTTGCGGCACCAAAGCATCAATG
130 CAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATG
* * * * * * * * *
1034774 TCATCTATCTTAATGAAGGGAAAGTGATTTCGGTTCCCAATCTCGAAAACAATTGTGACTGTTAT
195 TCATGTATCCTAATGAAGGGAAAGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTAC
* * * * * * *
1034839 GAGAATCAAAGATTGCCTCATTTATGGGATGAATTTTGATTTTAAGGATAATAGGGTAAAGAAAA
260 GAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
* * * *
1034904 GATTTTCATGAAAAATAAAA-CATTCAATATCATTTATCCTAATGAGGAAAAAGTGTTTATAGTG
325 GATTTCCATGAAAAAGAAAATCA-TCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTG
* * * * *
1034968 CCAAATCACAAAATGACT-AAGGATCATTACTAGAATCCATGTTTGTCACATTTGAGGCACGAAC
389 CCTAATCACAAAATGAATGAA-GATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAAC
* *
1035032 TTAGACTTTACAAAAATTACGGA
453 TTAGACTTTACAAAAATT-GGGG
** * * * *
1035055 GACGAAAGCATTTCTTGCAAAACCAAAGCATTAATATCGTGTATCCCAATGAGAAGACTATGTTT
1 GAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTT
** * ** * * * * *
1035120 ACAGTGCCTAATCTTGAAAAGAATGCAGATTAGCATGACTATTCATGTTTTTCATATTTGGGAAA
66 ATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTT-AGAAA
* * * * *
1035185 CAAGCTTTTATTCTATAAAAAATGATGGAAAGAAAAGCTTTTCTTGAC-ACACCAAAGCATCAAT
130 CAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTG-CGACACCAAAGCATCAAT
* ** * * * *
1035249 GTCATGCATCCTGAA-GAACAGAATGTGTTTTTGGTTCCCAATCATGAAAAGAATGAAGACTATT
194 GTCATGTATCCT-AATGAAGGGAAAGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTT
* * * *
1035313 ACGAGAAACAACGCTTGCCATATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAA
258 ACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAA
* * * * *
1035378 AAGATTTTCATGTAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGATTGTGTTTATTGT
323 AAGATTTCCATGAAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGT
* *
1035443 G-CTGAATCACAAAATGAATGAAAATCCTTAGTAGAATCCATGTTTGTCTCATTTGAGGCATGAA
388 GCCT-AATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAA
** *
1035507 GATAGACTTTATAAAAATTTGTGGG
452 CTTAGACTTTACAAAAA-TTG-GGG
* * * *
1035532 AAAAAAAGCCTTTCTTTCAAAACCAAAGCATCAATATCATGTATCCTAAAGAAAAGACTATGTTT
1 GAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTT
* * * * *
1035597 ATGGTGCCTAATCCTGAAAGGAAGGGGGATTAGTATAAGTATTCACGGTTGTCTTATTTA-AAAG
66 ATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAGAAA-
* * * *
1035661 GCAAACTTTGATTCTATCTAAAACGGTGGAAATAACAGTTTTTCTTGC-ACAACCAAAGCATCAA
130 -CAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGAC-ACCAAAGCATCAA
* * * * *
1035725 TGTCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATCTTGAACAGAATGGAGACTGTT
193 TGTCATGTATCCTAATGAAGGGAAAGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTT
* * * * * * * *
1035790 TCAATAATCGATTCTTG-CTATATTTAAGGGATGAAATTTAATATTAAGGAAAATAGGGCAAAGA
258 ACGAGAATCAATGCTTGCCT-TATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGA
* * ** * **
1035854 AAATATTTCCATGTAAAAGAAAATTGTCAATATCATTTATCATAGCGAGGAGAATGTGTTTATAG
322 AAAGATTTCCATGAAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAG
* * * * *
1035919 TGCCCAATCACAAAATGAATGAAGATCATTCCTAGAATCCATGCTTGTCTCATTTGAGGCATAAA
387 TGCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAA
*
1035984 CCTAGACTTT--AAAAATTGGTGG
452 CTTAGACTTTACAAAAATTGG-GG
** *
1036006 GAAAAAAGCCTTTCTTGCGTAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATATTT
1 GAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTT
* * * * * *
1036071 ATGGTGCCTAATCCTAAAAAGAATGGGGATGAATATGACTATGCATGTTTGTCTTATTTAGGAGA
66 ATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTA-GAAA
* * * * *
1036136 CAAACTTTGATTCTAT-AAAATACAGTGGAAAAAAAAACCTTTTCTTGCGACACCCAAGCATTAA
130 CAAACTTTGATTCTATCAAAA-ACGGTGG-AAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAA
* * * * * * **
1036200 TGTCATGTGTCCAAATGAAAGG-AA-TG----T--AT-CCAA---AGAAAAGAGTGGAGGTTGTT
193 TGTCATGTATCCTAATGAAGGGAAAGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTT
* * * * * *
1036253 GCGAGAATCAATGCTTGTCATATTTAAGGGAT-AAATTATTATTTTAAGGAAAATAGGGCCAAGA
258 ACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTT-TGATTTTAAGGAAAATAGGGCAAAGA
* *
1036317 AAATG-TTTCCAAGCAAAAATAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTAT
322 AAA-GATTTCCATG-AAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTAT
* * * * * * * * *
1036381 AGTGCTTAATCACAAAAAGAATGAAAATCCTTACTAGAATCCATATTTGTCTTACTTGAGCCGTA
385 AGTGCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCATG
** *
1036446 AAGGTAGACTTTGA-AAAAAATGGTGG
450 AACTTAGACTTT-ACAAAAATTGG-GG
* * * *
1036472 GAAAAAAGCCTTTCTTTCGAAGCCAAAGCATCAATATCATGTATCCTAAAT-AAAAGACTATGTT
1 GAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCT-AATGAGAAGACTATGTT
* *
1036536 TATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTTTTCATG---G--TTA---AGAGA
65 TATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAGAAA
* * * *
1036593 CGAACTTTGATTCTACCAAAAATGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATG
130 CAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATG
* * ** * * * * * *
1036658 TCATCTATGCTAATGGTGAGAAAGTGTTGTTGGTTCCTATTCTTGAAAAAAATTGGAAACTGTTA
195 TCATGTATCCTAATGAAGGGAAAGTGTTTTTGGTTCCCAATCTTGAAAAGAA-TGGAGACTGTTA
* * *
1036723 CGATAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGCAAAATAGGGAAAAGAAA
259 CGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAA
* * * * *
1036788 AGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCATAATAAGGACAATGTTTTTATAGTG
324 AGATTTCCATGAAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTG
* * * *
1036853 CCGAATCCCAAAATGAATGAAGATCCCTACTAGAATCCATGTTTGTC-CTATCTGAGGCATGAAC
389 CCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTC-ATTTGAGGCATGAAC
* * *
1036917 TTAGACTTTATAAAAAAATGGTTG
453 TTAGACTTTA-CAAAAATTGG-GG
* * * * *
1036941 GAAAAAAACCTTTCTTGCGAAAGCAAAGCATTAATATCAGGTATCCTAATGAGAAGACTATGTTT
1 GAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTT
* * * ** *
1037006 ATGGTGCCTAATCC-AAAAATGAATGGGGATTAGTATGAGTATTCCTGGTTAACTTATTTACAAG
66 ATGGTGCCTAATCCTGAAAA-GAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAGAA-
** * *
1037070 ACAAACTTTGATTCTATCAAAAACATTGGAAAGAAAAGCTTTTCTTACGACAACAAAGCATCAAT
129 ACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAAT
** ** * * * *
1037135 GTCACATATCCTAATGAACAGAATGTGTTTTTGGTTCCCAATCGTGAAAAGAATAGAGACTATTA
194 GTCATGTATCCTAATGAAGGGAAAGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTA
* * *
1037200 CTAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTCAAGGAAAATAAGGCAAAGAAA
259 CGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAA
* * * * * *
1037265 AGATTTTCATGCAAAA-AAAATCATCAATATCCTTTATCCTAATGAGGAGATTGTGTTTATTGTT
324 AGATTTCCATGAAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTG
* * * * *
1037329 CCTAATCTCAAAATGAACGAAAATCCTTGCTAGAATCTATGTTTGTCTCATTTGAGGCATGAACT
389 CCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACT
*
1037394 TAGACTTTACAAAAATTGGTAG
454 TAGACTTTACAAAAATTGG-GG
* * * * * * *
1037416 GAAAAAATCCTTTCTTTCAAAACCAAAGCATTAATATCGTCTATCCTAGTGAGACGACTATGTTT
1 GAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTT
* * * *
1037481 ATGGTGCCTAATCTTGAAAATAATGGGGATTAGTATAACTATTAACA-GTTTTGTCTTATTTAAG
66 ATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATT--CATG-TTTGTCTTATTT-AG
* * * * * * * *
1037545 AGACAAACTTTGATTCTATCAAAAATGATGGAAAGAAAAGCTTATCTTGTGACCCCAAAGCGTCT
127 AAACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCA
* * * **
1037610 ATGCCATGTATCCTAATGAAGGGAAAGTGTTATTGGTTCCCATTCTTGAAAAGAATGGAGACTAC
192 ATGTCATGTATCCTAATGAAGGGAAAGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGT
* * * * *
1037675 TACGATAATCAATGGC-TGCCTTGTTTAAGGAATGACCTTTGATTTTAAGGAAAATATGGCAAAG
257 TACGAGAATCAAT-GCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
* * *
1037739 AAAATATTTCCATGCAAAAGAAAATCATCAATGTCATTTATCCTAATGAGGAGAATGTGTTTATA
321 AAAAGATTTCCATGAAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* * * *
1037804 GTGCTTAATCACAAAATGAATGAAGATTCTTACTAGAATCCATGTTTGTCTCATTTGAGGCTTAA
386 GTGCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCATGA
* *
1037869 ACATAGACTTAACAAAAATTGGTGG
451 ACTTAGACTTTACAAAAATTGG-GG
* * * * *
1037894 GAAAAAAGCCTTTCATT-CAAAAACAAAGCATCAATATCAAGTACCCTTACGAGAAGACTATGTT
1 GAAAAAAGCCTTTC-TTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTT
* ** *
1037958 TGTGGTGCCTAATCCAAAAAAGAATGAGGATTAGTATGAGTATTCATAG-TTGTCTTATTTA-AA
65 TATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCAT-GTTTGTCTTATTTAGAA
* * *
1038021 AGTCAAACTTTGATTCTATCAAAAACGGTGGAAAAAAAAGTTTTTCTTGCGACATCAAAGCATCA
129 A--CAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCA
* * * **
1038086 ATGTCATGTATCCAAAAGAAGGGAATGTGTTTTTCATTCCCAATCTTGAAAAGAATGGAGACTGT
192 ATGTCATGTATCCTAATGAAGGGAAAGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGT
* **
1038151 TACGAGAATCAATGCTTACCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAATGCAAAGA
257 TACGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGA
* * *
1038216 AAAGATTTCCATGTAAAAGAAAATCATTAATAT-ATTTTATCGC-AATAAGGAGAATGTGTTTAT
322 AAAGATTTCCATGAAAAAGAAAATCATCAATATCA-TTTATC-CTAATGAGGAGAATGTGTTTAT
* * * *
1038279 AGTGCCTAATCAAAAAATGAATGAAGATCCCTACTGGAATCCATGTTTGTCTTATTTGAGGCATG
385 AGTGCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCATG
** *
1038344 AACTTAGACTTTACAAAAAACGGTAG
450 AACTTAGACTTTACAAAAATTGG-GG
* * *
1038370 GAAAAAAGCCTTTCTTGCAAAAACAAAGCATCAATATCATGTATCATAATGAAAAGACTATGTTT
1 GAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTT
* * * * ** * *
1038435 ATGGTGCCAAATCCTGAAAAGAATAGGGATTAGTATAAGTATTCCTAATTCTCTTATTTACAAGA
66 ATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAGAA-A
* * * * * *
1038500 CAAACTTTAATTTTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCTAAACCAAGGCATCAATT
130 CAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATG
* * * * * * *
1038565 TCATGTATCCTAAAGAACGGAATGTGTTTTTGGTT-CCACATCTTGAAAAGAATGAAAATTGCTA
195 TCATGTATCCTAATGAAGGGAAAGTGTTTTTGGTTCCCA-ATCTTGAAAAGAATGGAGACTGTTA
*
1038629 TGAGAATCAATGCTTGCCTTATTT-A---A-GAACTTTGATTTT-AGGAAAAATAGGGCAAAGAA
259 CGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGG-AAAATAGGGCAAAGAA
* * * * ** *
1038688 AAGATTTCCATGCAAAA-AAAATCATCAATATCATTTATCTTATTGAGGAGATTCCGTTTATTGT
323 AAGATTTCCATGAAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGT
*
1038752 TCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAAC
388 GCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAAC
1038817 TTAGACTCTT-CAAAAATTGGCGG
453 TTAGACT-TTACAAAAATTGG-GG
* * * * * * *
1038840 G-AAAAAGTCTTTCTTGCGAAACCAAAGCGTTAATATCATGAACCCTTATGAGAAGACTATGTTT
1 GAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTT
* * * * * *
1038904 ATGGTGCCTAATCTTTAAAAGAATGGGGAATAGTATGAGAACTCACGTTTGTCTTATTTA-ATAG
66 ATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAGA-A-
** * * * * *
1038968 ATGAACTTTAATTCTATCAAAAACGATGGAAAGAAAAACCTTTCTTGCGGCACCAAAGCATCAAT
129 ACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAAT
*
1039033 GTCATCTATCCTAATGAAGGGAAAGTGTTTT
194 GTCATGTATCCTAATGAAGGGAAAGTGTTTT
1039064 CGATTCATTT
Statistics
Matches: 4554, Mismatches: 764, Indels: 234
0.82 0.14 0.04
Matches are distributed among these distances:
456 44 0.01
457 25 0.01
458 7 0.00
461 3 0.00
462 6 0.00
463 73 0.02
464 108 0.02
465 2 0.00
466 112 0.02
467 5 0.00
468 120 0.03
469 356 0.08
470 121 0.03
471 292 0.06
472 124 0.03
473 41 0.01
474 483 0.11
475 306 0.07
476 1314 0.29
477 698 0.15
478 312 0.07
479 2 0.00
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.31
Consensus pattern (474 bp):
GAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTT
ATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAGAAAC
AAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGT
CATGTATCCTAATGAAGGGAAAGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACG
AGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAG
ATTTCCATGAAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
TAATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTA
GACTTTACAAAAATTGGGG
Found at i:1039454 original size:428 final size:426
Alignment explanation
Indices: 1038659--1039474 Score: 975
Period size: 428 Copynumber: 1.9 Consensus size: 426
1038649 ATTTAAGAAC
1038659 TTTGATTTTAGGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTT
1 TTTGATTTTAGGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTT
* * * ** * * * *
1038724 ATCTTATTGAGGAGATTCCGTTTATTGTTCCTAATCACAAAATGAATGAAGATCCTTACTAGAAT
66 ATCCTAATGAGGAAAAACCGTTTATAGTGCCAAATCACAAAATGAATGAAGATCATTACTAGAAT
* *
1038789 CCATGTTTGTCTCATTTGAGGCATGAACTTAGACTCTTCAAAAATTGGCGGGAAAAAGTCTTTCT
131 CCATGTTTGTCTCATTTGAGGCATGAACTTAAACTCTTCAAAAATTGGCGAGAAAAAGTCTTTCT
* * * * ** * *
1038854 TGCGAAACCAAAGCGTTAATATCATGAACCCTTATGAGAAGACTATGTTTATGGTGCCTAATCTT
196 TGCAAAACCAAAGCATTAATATCATGAACCCTAATGAGAACACTATGTTTACAGTGCCAAATCCT
* * * * * * *
1038919 TAAAAGAATGGGGAATAGTATGAGAACTCACGTTTGTCTTATTTAATAGATGAACTTTAATTCTA
261 GAAAAAAATGGAGAATAGTATGACAACTCACGTTTGTCATATTTAAGAGATCAACTTTAATTCTA
* *
1038984 TCAAAAACGATGGAAAGAAAAACCTTTCTTGCGGCACCAAAGCATCAATGTCATCTATCCTAATG
326 TCAAAAACGATGGAAAGAAAAACCTTTCTTGAGACACCAAAGCATCAATGTCATCTATCCTAATG
1039049 AAGGGAAAGTGTTTTCGATTCATTTATGGGATGAAT
391 AAGGGAAAGTGTTTTCGATTCATTTATGGGATGAAT
* * * *
1039085 TTTGATTTTAAGG-ATAATAGGGTAAAGAAAAGATTTTCATGCGAAATAAAA-CATTCAATATCA
1 TTTGATTTT-AGGAAAAATAGGGCAAAGAAAAGATTTCCATGC-AAAAAAAATCA-TCAATATCA
* ** * * *
1039148 TTTTTCCTAATGAGGAAAAAGTGTTTATAGTGGCAAATCACAAAATGACT-AAGGCTCATTACTA
63 TTTATCCTAATGAGGAAAAACCGTTTATAGTGCCAAATCACAAAATGAATGAA-GATCATTACTA
*
1039212 GAATCCATGTTTGTCAT-ATTTGAGGCATGAACTTAAACT-TTACAAAAATTAGG-GAGACGAAA
127 GAATCCATGTTTGTC-TCATTTGAGGCATGAACTTAAACTCTT-CAAAAATT-GGCGAGA-AAAA
* *
1039274 G-CATTTCTTGCAAAACCAAAGCATTAATATCATGTATCCTAATGAGAACACTATGTTTACAGTG
188 GTC-TTTCTTGCAAAACCAAAGCATTAATATCATGAACCCTAATGAGAACACTATGTTTACAGTG
* * * * * * **
1039338 CCAAATCCTGAAAAAAATGTAGATTAGTATGACTATTCATGTTTTTCATATTTGGGA-ATCAAGC
252 CCAAATCCTGAAAAAAATGGAGAATAGTATGACAACTCACGTTTGTCATATTTAAGAGATCAA-C
* * * *
1039402 TTTTATTCTAT-AAATAACGATGGAAAGAAAAGCTTTTCTTTAGACACCAAAGCATCAATGTCAT
316 TTTAATTCTATCAAA-AACGATGGAAAGAAAAACCTTTCTTGAGACACCAAAGCATCAATGTCAT
* *
1039466 GTGTCCTAA
380 CTATCCTAA
1039475 AGAATACAAT
Statistics
Matches: 324, Mismatches: 55, Indels: 20
0.81 0.14 0.05
Matches are distributed among these distances:
426 41 0.13
427 120 0.37
428 163 0.50
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.32
Consensus pattern (426 bp):
TTTGATTTTAGGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTT
ATCCTAATGAGGAAAAACCGTTTATAGTGCCAAATCACAAAATGAATGAAGATCATTACTAGAAT
CCATGTTTGTCTCATTTGAGGCATGAACTTAAACTCTTCAAAAATTGGCGAGAAAAAGTCTTTCT
TGCAAAACCAAAGCATTAATATCATGAACCCTAATGAGAACACTATGTTTACAGTGCCAAATCCT
GAAAAAAATGGAGAATAGTATGACAACTCACGTTTGTCATATTTAAGAGATCAACTTTAATTCTA
TCAAAAACGATGGAAAGAAAAACCTTTCTTGAGACACCAAAGCATCAATGTCATCTATCCTAATG
AAGGGAAAGTGTTTTCGATTCATTTATGGGATGAAT
Found at i:1039977 original size:477 final size:476
Alignment explanation
Indices: 1039071--1044649 Score: 2775
Period size: 477 Copynumber: 11.6 Consensus size: 476
1039061 TTTCGATTCA
* * * * *
1039071 TTTATGGGATGAATTTTGATTTTAAGGATAATAGGGTAAAGAAAAGATTTTCATGCGAAATAAAA
1 TTTA-GGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAA
* * * * *
1039136 -CATTCAATATCATTTTTCCTAATGAGGAAAAAGTGTTTATAGTGGC-AAATCACAAAATG-ACT
65 TCA-TCAATATCATTTATCATAATGAGGAGAATGTGTTTATAGT-GCTAAATCACAAAATGAACG
* * *
1039198 AAGGCTCATTACTAGAATCCATGTTTG--TCATATTTGAGGCATGAACTTAAACTTTACAAAAAT
128 AA-GATCCTTACTAGAATCCATGTTTGCCTCATA--TGAGGCATGAACTTAGACTTTACAAAAAT
* ** * * * * * *
1039261 T-AGGGAGACGAAAGCATTTCTTGCAAAACCAAAGCATTAATATCATGTATCCTAATGAGAACAC
190 TGTGGGA-AAAAAAGCCTTTCTTTCGAAACCAAAGCATCAATATCATGTATCCTAAAGAGAAGAC
** * * ** * * * *
1039325 TATGTTTACAGTGCCAAATCCTGAAAAAAATGTAGATTAGTATGACTATTCATGTTTTTCATATT
254 TATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGGTTGTCTTATT
** * * * * * *
1039390 TGGGAATCAAGCTTTTATTCTAT-AAATAACGATGGAAAGAAAAGCTTTTCTTTA-GACACCAAA
319 TAAGAAGCAAACTTTGATTCTATCAAA-AACGGTGGAAATAAAAGCTTTT-GTTACGACACCAAA
* ** * *** *** * * *
1039453 GCATCAATGTCATGTGTCCTAAAGAATACAATGTGTTTTTGGTTCCCAGTCTTGAAAAGAATGAA
382 GCATCAATGTCAAGCATCCTAATGAAGGGAATAAATTCTTAGTTCCCAATCTTGAAAAGAATGAA
1039518 GACTATTACGAAAAACAATGCTTGCCTTAT
447 GACTATTACGAAAAACAATGCTTGCCTTAT
* * * *
1039548 TTTAGGGATGAGCTTTGTTTTTAAGAAAAATAGGGCAAAGAAAAGATTTTCATGTAAAAGAAAAT
1 TTTAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAAT
* * *
1039613 CATCAATATCATTGATCATAATAAGGAGATTGTGTTTA-ATGTGCTAAATCACAAAATGAACGAA
66 CATCAATATCATTTATCATAATGAGGAGAATGTGTTTATA-GTGCTAAATCACAAAATGAACGAA
* ** *
1039677 AATCCTTACTAGAATCCATGTTTGCCTCATATGAGGCATGAAGATAGACTTTACACAAACTTGTG
130 GATCCTTACTAGAATCCATGTTTGCCTCATATGAGGCATGAACTTAGACTTTACA-AAAATTGTG
*
1039742 GGAAAAAAAACCTTTCTTTCGAAACCAAAGCATCAATATCATGTATCCTAAAGAGAAGACTATGT
194 GGAAAAAAAGCCTTTCTTTCGAAACCAAAGCATCAATATCATGTATCCTAAAGAGAAGACTATGT
*
1039807 TTATGGTGCCTAATCCTGAAAGGAATGGGGATTAGTATGAGTATTCATGGTTGTCTTATTTAAGA
259 TTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGGTTGTCTTATTTAAGA
*
1039872 AGCAAACTTTGATTCTATCTAAAACGGTGGAAATAAAAGCTTTTGTTACGACACCAAAGCATCAA
324 AGCAAACTTTGATTCTATCAAAAACGGTGGAAATAAAAGCTTTTGTTACGACACCAAAGCATCAA
*
1039937 TGTCAAGCATCCTAATGACGGGAATAAATTCTTAGTTCCCAATCTTGAAAAGAATGAAGACTATT
389 TGTCAAGCATCCTAATGAAGGGAATAAATTCTTAGTTCCCAATCTTGAAAAGAATGAAGACTATT
1040002 ACGAAAAACAATGCTTGCCTTAT
454 ACGAAAAACAATGCTTGCCTTAT
* * * *
1040025 TTTAGGGATGAGCTTTGTTTTTAAGAAAAATAGGGCAAAGAAAAGATTTTCATGTAAAAGAAAAT
1 TTTAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAAT
* * *
1040090 CATCAATATCATTGATCATAATAAGGAGATTGTGTTTA-ATGTGCTAAATCACAAAATGAACGAA
66 CATCAATATCATTTATCATAATGAGGAGAATGTGTTTATA-GTGCTAAATCACAAAATGAACGAA
* ** *
1040154 AATCCTTACTAGAATCCATGTTTGCCTCATATGAGGCATGAAGATAGACTTTACACAAACTTGTG
130 GATCCTTACTAGAATCCATGTTTGCCTCATATGAGGCATGAACTTAGACTTTACA-AAAATTGTG
*
1040219 GGAAAAAAAACCTTTCTTTCGAAACCAAAGCATCAATATCATGTATCCTAAAGAGAAGACTATGT
194 GGAAAAAAAGCCTTTCTTTCGAAACCAAAGCATCAATATCATGTATCCTAAAGAGAAGACTATGT
*
1040284 TTATGGTGCCTAATCCTGAAAGGAATGGGGATTAGTATGAGTATTCATGGTTGTCTTATTTAAGA
259 TTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGGTTGTCTTATTTAAGA
*
1040349 AGCAAACTTTGATTCTATCTAAAACGGTGGAAATAAAAGCTTTTGTTACGACACCAAAGCATCAA
324 AGCAAACTTTGATTCTATCAAAAACGGTGGAAATAAAAGCTTTTGTTACGACACCAAAGCATCAA
* *
1040414 TGTCAAGCATCCTAATGACGGGAATAAATTCTTAGTTCCCAATCTTGAAAAGAATGGAA-ACTGT
389 TGTCAAGCATCCTAATGAAGGGAATAAATTCTTAGTTCCCAATCTTGAAAAGAAT-GAAGACTAT
* * * * * ** *
1040478 TATGACAATCGATTCTTATCATAT
453 TACGAAAAACAATGCTTGCCTTAT
* * * * * * * * * * * * *
1040502 TTAAGGGTTGAATTTTGGTTTTAAGGAAATTGGGGCGAAGAGAATACTTCCACGCAAAAAAAAAT
1 TTTAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAAT
* * * * * * * *
1040567 TATAAATATCATTTATCATAGTGAGGAGAAAGTGTTTATAGTGCCAAATCCCAATATGAATGAAG
66 CATCAATATCATTTATCATAATGAGGAGAATGTGTTTATAGTGCTAAATCACAAAATGAACGAAG
* * * * * * *
1040632 ATCCTTACTGGAGTCCTTGTTTGTCTCATTTCAGGCATGTACTTAGACTTTACAAAAATTGGTGG
131 ATCCTTACTAGAATCCATGTTTGCCTCATATGAGGCATGAACTTAGACTTTACAAAAATT-GTGG
* * *
1040697 G-AAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTT
195 GAAAAAAAGCCTTTCTTTCGAAACCAAAGCATCAATATCATGTATCCTAAAGAGAAGACTATGTT
* * *
1040761 TATGGTGCCTAATCCTGAAAAAAATGGGGATTAGTATGAGTCTTCATGGTTGTCTTATTTAAGAG
260 TATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGGTTGTCTTATTTAAGAA
* * * * * *
1040826 GTAAACTTTGATTCTATCAAAAAACGGTGGAAATAAAAGTTTTTCTTGCAACATCAAAGCATCAA
325 GCAAACTTTGATTCTATC-AAAAACGGTGGAAATAAAAGCTTTTGTTACGACACCAAAGCATCAA
* * * * **
1040891 TGTCATGCATTCTACTAAAGGGAATGTATTCTTAGTTCCCAATCTTGAAAAGAAT-AGAGACTAT
389 TGTCAAGCATCCTAATGAAGGGAATAAATTCTTAGTTCCCAATCTTGAAAAGAATGA-AGACTAT
* * *
1040955 TAC-AATAATCGATTCTTG--TTAT
453 TACGAA-AAACAATGCTTGCCTTAT
* * *
1040977 ATTTATAGGATGAAATTTGATTTTAAGGAAAATAGGGCAAAGAAAATATTTTCATGCAAAAGAAA
1 -TTTA-GGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAA
* * * * * *
1041042 ATCATTAACATCATTTATCATAGTGA-GAGAATATGTTTATAGTGCCT-AATCACAAAACGAATG
64 ATCATCAATATCATTTATCATAATGAGGAGAATGTGTTTATAGTG-CTAAATCACAAAATGAACG
* * * * * *
1041105 AAGATCATTCCTAGGATCCATGTTTGTCTCATTTGAGGCATAAACTTAGACTTTACAAAAATTGG
128 AAGATCCTTACTAGAATCCATGTTTGCCTCATATGAGGCATGAACTTAGACTTTACAAAAATT-G
* ** *
1041170 TGGG-AAAAAAGCCTTTCTTGT-GAAACTAAAGCATCAATATCATAAATCTTAATA-AGAAGACT
192 TGGGAAAAAAAGCCTTTCTT-TCGAAACCAAAGCATCAATATCATGTATCCTAA-AGAGAAGACT
* * ** * * ** **
1041232 ATGTTTATGGTGCCTAATCCTGAGAAGAATGGGAAAAAAGCCTTTCTTGTGAAACTAAAGCATCA
255 ATGTTTATGGTGCCTAATCCTGAAAAGAATGGG------G--ATTAGTATG--AGT-ATTCATGG
* * * * * * * ** * * * * ** **
1041297 ATATCATGAATCTTAATG-AG-AAGACTATGTTTATGGTGCCTAATC-CTGAAAAGGATGAGGAT
309 TTGTC-T-TAT-TTAA-GAAGCAA-ACTTTGATTCT-AT-CAAAAACGGTGGAAA-TAAAAGCTT
* * * * * * ** ** *
1041359 TAGTATGA-GTACA-CATAAGAATGAGGAT-T--AG--TCTTATTTAAAAGACGAACTTTCGTT-
366 TTGT-T-ACG-ACACCA-AAGCATCA--ATGTCAAGCATCCTAATGAAGGGAATAA-ATTC-TTA
* ** ** * * * * * *
1041416 CTATCAAAAATGGTGGAAAGAA--AAGCCT-TT-CTTGCAACACCAAAGCATCAATGTCATCTAT
423 GT-TC-CCAATCTTGAAAAGAATGAAGACTATTAC--G-AAAAACAATGC-T---TG-CCT-TAT
* * * * * ** * ** *** * *
1041477 CATAACGAAGGGAA-AGTG-TTTT-TGGTTCCCAATCTTGAAAAGAATTGAGACTATTT--TG-A
1 -TTTAGGGA-TGAACTTTGATTTTAAGG---AAAATAGGGCAAAGAA--AAGA-T-TTTCATGCA
* ** ** * * ** * * * * *
1041536 TAATCAACGCTTGC-CT-T-ATTTAAGGGATGAACT-ACGATTTTAA-G-GATAATAG-GGTAAA
57 AAAGAAAATCAT-CAATATCATTT-A-TCAT-AA-TGAGGA---GAATGTGTTTATAGTGCTAAA
* * * * *
1041594 -GAAAATATTTTCATGCAACAAAAAAT-CTT-C-A-ATAT-CAT-TTAT-CCT-A-ATGAGAAGA
114 TCACAA-A-----ATG-AAC-GAAGATCCTTACTAGA-ATCCATGTT-TGCCTCATATGAG--GC
* *** * * * * * * * * ** *
1041649 AAGTTTTATAGTGCCTAATCATAAAATAAGTGGAGATCATTGCTAGAATCCATGTT-TGTCTCAT
167 ATGAACT-TAG-ACTTTA-CA-AAAAT-TGTGG-GA--A----AAAAAGCC-T-TTCTTTCGAAA
*** * * * ** * * * * *
1041713 TTGAGGCA-CGAACT-TAGACTTTA-CAAAAATTG-GTAAGACGAAAGCATTTCTTGTG---AAA
218 CCAAAGCATC-AA-TAT-CA-TGTATCCTAAA--GAG-AAGAC-TATG--TTTATGGTGCCTAAT
* * * * * * ** * * *
1041771 CCATTGCATTAATATTGTGTATCCTA--ATGAGAAGACTATGTTTTTGGTCCCTAATCCTAAGAA
273 CC--TG-A-AAAGAATGGGGAT--TAGTATGAGTATTC-ATG--GTT-GT--CTTAT-TTAAG-A
* * * * *
1041834 AGAATGGAGATTTGTATGATTATTCACGTTTGTCATATTTAAGA-GGCAAACTTTGATTCTATCA
324 AGCA---A-A-CT-T-TG---ATT--C---TATCA-A---AA-ACGG------TGGA---AAT-A
* ** ** * * * * * * * * *
1041898 AAAAC-GGTGGAAAGAAAAGCTTTTCTTGCAA-CACCAAAGCATTAATGTCAT-GTATCCTAATG
359 AAAGCTTTTGTTACG-ACA-C----C---AAAGCATCAATG--TCAA-G-CATCCTA--ATG---
** * * * * * ** ** *
1041960 AAGGGAATATGTTTTTGGTTCCCAATCTTGAAAGGAATGGAGACTATTATGAGTATTAATTCTTG
406 AAGGGAATAAATTCTTAGTTCCCAATCTTGAAAAGAATGAAGACTATTACGAAAAACAATGCTTG
* *
1042025 TCATAT
471 CCTTAT
* * * * * *
1042031 TTGAGGGATGAATTTTGATTTTAAGGAAAACAGGGTAAAAAAAAGATTTCCATGCAAAAGAAAAT
1 TTTAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAAT
* * ** ** *
1042096 CATCAATATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTGCCT-AATTGCAAAATGAATTAT
66 CATCAATATCATTTATCATAATGAGGAGAATGTGTTTATAGTG-CTAAATCACAAAATGAACGAA
* ** * * * ** * *
1042160 GATCATTACTAGAGCCCATGTTTGTCTCATTTGAGACACAAACCTAAACTTTACAAAAATTGGTG
130 GATCCTTACTAGAATCCATGTTTGCCTCATATGAGGCATGAACTTAGACTTTACAAAAATT-GTG
* * * ** * * * *
1042225 GG-AAGAAAGCC-TTCATGCGAAAGTAAACCATCAATATCATGTATCTTTATGAGAAGACTATGT
194 GGAAAAAAAGCCTTTCTTTCGAAACCAAAGCATCAATATCATGTATCCTAAAGAGAAGACTATGT
* * * * * * * * *
1042288 TTATGGTACTTAATCCTAAAAAGAATGGGAATTAGTATGACTATTAAAGTTTGTCTTATTTAA-C
259 TTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGGTTGTCTTATTTAAGA
* * * * * * *
1042352 AGACAAATTTTAATTTTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTATGACACCAAAGCATC-
324 AG-CAAACTTTGATTCTATCAAAAACGGTGGAAATAAAAGCTTTTGTTACGACACCAAAGCATCA
* ** * * * **
1042416 -T-T---G-------ATGAATGGAA-AGCTTCTTGGTTCCCAATCTGGAAAAGAGT-AGAGACCG
388 ATGTCAAGCATCCTAATGAAGGGAATAAATTCTTAGTTCCCAATCTTGAAAAGAATGA-AGACTA
** * * * *
1042467 TTGTGAGAATCGACGCTTG--TTAT
452 TTACGAAAAACAATGCTTGCCTTAT
** * * *
1042490 ATTTATGGGATGAGTTTTTATTTTAAGGAAATTAGGGCAGAGAAAAGA-TTTCTATGCAAAA-AA
1 -TTTA-GGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTC-ATGCAAAAGAA
* * *
1042553 AATCATCAATATCATTTATCCTAATGAGGAGATTGTGTTTATTA-TGCCT-AATTACAAAATGAA
63 AATCATCAATATCATTTATCATAATGAGGAGAATGTGTTTA-TAGTG-CTAAATCACAAAATGAA
* * * * * *
1042616 AGAAGATCATTACTAGAATCCATGTTTGTCTCATTTTAGGCACGAACTTAGACTTTACAAAAATT
126 CGAAGATCCTTACTAGAATCCATGTTTGCCTCATATGAGGCATGAACTTAGACTTTACAAAAATT
* * * * * * *
1042681 G-GTGAGAAGAAAGCTTTTCTTGT-GAAACCAAAGCATTAATATCGTGTATCCTAATGAGAAAAC
191 GTGGGA-AAAAAAGCCTTTCTT-TCGAAACCAAAGCATCAATATCATGTATCCTAAAGAGAAGAC
* * * * ***
1042744 TATGTTTATGGTGCATAACCCTGAAAAGAATGGGGATTAGTATGACTTTTCACATTTGT-TATAT
254 TATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGGTTGTCT-TAT
* * * * *
1042808 TTAAG-AGACAAGCTTTGATTCTATCAATAATGGTGGAAA-AAAA-CTTTTCTTGCGACACCAAA
318 TTAAGAAG-CAAACTTTGATTCTATCAAAAACGGTGGAAATAAAAGCTTTTGTTACGACACCAAA
* * *** *** * * * * *
1042870 GCATCAATGTCATGTATCCCCCTGAAGGGAATGTGTTTTTGGTTCTCAATCATGAAAAGAATAAA
382 GCATCAATGTCAAGCATCCTAATGAAGGGAATAAATTCTTAGTTCCCAATCTTGAAAAGAATGAA
* * * * *
1042935 GATTGTTACGAGAATCAATGCTTGCTTTAT
447 GACTATTACGAAAAACAATGCTTGCCTTAT
* * *
1042965 TTGAGGGATGAACTTTGATTTTGAGGAAAATAGGGCAAAGAAAAGATTTTCATGTAAAAGAAAAT
1 TTTAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAAT
* * * *
1043030 CATCAACATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCT-AATCAC-AAATGAATGAA
66 CATCAATATCATTTATCATAATGAGGAGAATGTGTTTATAGTG-CTAAATCACAAAATGAACGAA
* * * * *
1043093 GATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACATAGACTTTACAAAAATTAGTA
130 GATCCTTACTAGAATCCATGTTTGCCTCATATGAGGCATGAACTTAGACTTTACAAAAATT-GTG
* * *
1043158 GG-AAAAAAGCCTTTCTTACGAAACCAAAGCATCAATATCATGTATTCC-AATGAGAATACTATG
194 GGAAAAAAAGCCTTTCTTTCGAAACCAAAGCATCAATATCATGTA-TCCTAAAGAGAAGACTATG
** * * * * * *
1043221 TTTATGGTGCCTAATGTTGAAAATAACGGGGATTTGTATCACG-ATTTAT-GTCTGTTTTATTTA
258 TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGA-GTATTCATGGT-TGTCTTATTTA
* ** * * * ** *
1043284 A-AAGACAAACTTTGATTTTATCAAAAACGGCAGAAAGAAAACCTTTTCTTGTGATACCAAAGCA
321 AGAAG-CAAACTTTGATTCTATCAAAAACGGTGGAAATAAAAGCTTTTGTTACGACACCAAAGCA
* * ** * * * *
1043348 TCAATGCCATGTGTCCTAATGAGGGGAAGT--GTTCTTGGTTCCCAATCTTGAAAAGAATGGAGA
385 TCAATGTCAAGCATCCTAATGAAGGGAA-TAAATTCTTAGTTCCCAATCTTGAAAAGAATGAAGA
* * * * * * *
1043411 CTGTTATGACAATCGAT-CATTGTCATAT
449 CTATTACGAAAAACAATGC-TTGCCTTAT
* * * * *
1043439 TTAAGGGATGAATTTTGATTTTGAGGAAAATAGGGCAATA-AAAAGATTTCCATGCAAAA-AAAT
1 TTTAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAA-AGAAAAGATTTTCATGCAAAAGAAAA
* * * *
1043502 TCATCATTATCATTTAT-TTGAATGAGGAGAATGTGTTTATAGTGCCT-AATCACAAAATAAATG
65 TCATCAATATCATTTATCAT-AATGAGGAGAATGTGTTTATAGTG-CTAAATCACAAAATGAACG
* * * * * * *
1043565 AAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACATAGACTTTGCAAAAATTGG
128 AAGATCCTTACTAGAATCCATGTTTGCCTCATATGAGGCATGAACTTAGACTTTACAAAAATT-G
* * * * ** * * *
1043630 TGGG-AAGAAAGCCTTTCTTGCAAAAACAAAGTGTCAATATCATGTA-CCTTTATGAGAAAACTA
192 TGGGAAAAAAAGCCTTTCTTTCGAAACCAAAGCATCAATATCATGTATCC-TAAAGAGAAGACTA
* *
1043693 TGTTTATGGTGCCTAATCCT-AAAAGGAATGGGGATTGGTATGCA--A---A----------AAT
256 TGTTTATGGTGCCTAATCCTGAAAA-GAATGGGGATTAGTATG-AGTATTCATGGTTGTCTTATT
* * * * ** * *
1043742 TAAG-AGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAGAACCTTTTCTTGTGACCCCAATG
319 TAAGAAG-CAAACTTTGATTCTATCAAAAACGGTGGAAATAAAAGCTTTTGTTACGACACCAAAG
* * * *** * *
1043806 CATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGAAG
383 CATCAATGTCAAGCATCCTAATGAAGGGAATAAATTCTTAGTTCCCAATCTTGAAAAGAATGAAG
* * **
1043871 ACTGTTAC-AAGAATCAACACTTGCCTTAT
448 ACTATTACGAA-AAACAATGCTTGCCTTAT
* * * * * * *
1043900 TTCAAGGATGAA-TTTCAATTTTATGAAAAATAGGGCAAAGAAAAGATTTCCAAGCAAAAGAAAA
1 TTTAGGGATGAACTTT-GATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAA
* ** *
1043964 TCATCAATATCATTTATCATAATTCA-GAGAATGTGTTTATAGTGCCCAATCACAAAATGAATGA
65 TCATCAATATCATTTATCATAA-TGAGGAGAATGTGTTTATAGTGCTAAATCACAAAATGAACGA
* * * *
1044028 AGATCCTTACTAGAATCCATGTATGTCTGATTTGAGGCATGAACTTAGACTTTACAAAAATTAG-
129 AGATCCTTACTAGAATCCATGTTTGCCTCATATGAGGCATGAACTTAGACTTTACAAAAATT-GT
* * * * * * *
1044092 GGG-GAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCGTAATGAGAAAACTATG
193 GGGAAAAAAAGCCTTTCTTTCGAAACCAAAGCATCAATATCATGTATCCTAAAGAGAAGACTATG
* * * * * * * *
1044156 TTTATGGTGCCTAATCCTAAAAAGAATAGGTATTGGTATGACTAATCATGTTTGTCTTATTTTAG
258 TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGGTTGTCTTATTTAAG
* * * * *
1044221 -AGACAAACTTTGATTCTATTAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACCCCAAAGCATC
323 AAG-CAAACTTTGATTCTATCAAAAACGGTGGAAATAAAAGCTTTTGTTACGACACCAAAGCATC
** * * *** * * * *
1044285 AATGTCTTGCGTCCTAATGAAAGGAATGCGTTTTTGGTT-CCAATCTTGAAAAGAATGGAGACTG
387 AATGTCAAGCATCCTAATGAAGGGAATAAATTCTTAGTTCCCAATCTTGAAAAGAATGAAGACTA
* *
1044349 TTAC-AAGAATCAATGCTTGCTTTAT
452 TTACGAA-AAACAATGCTTGCCTTAT
* * * * * *
1044374 TTCAGGGATAAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCAAGCAAAAGAAAAT
1 TTTAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAAT
* * * * * ** *
1044439 CATCAATATCATTTATCCTAGTAAAGAGAATGTGTTTATTGTGCCT-AATCAC-AAATTTATGAA
66 CATCAATATCATTTATCATAATGAGGAGAATGTGTTTATAGTG-CTAAATCACAAAATGAACGAA
* * * * * * *
1044502 GATCATTACTAGAGTCACA--TTTGTCTCATTTGAGGCAGGAACATAGACTTTTCAAAAATTGGT
130 GATCCTTACTAGAATC-CATGTTTGCCTCATATGAGGCATGAACTTAGACTTTACAAAAATT-GT
* * * * * *
1044565 GGTG--AGAAAGCCTTTCTTGCAAAACCAAAGCGTCAATATCATGTATCCTTATGAGAAGACTAT
193 GG-GAAAAAAAGCCTTTCTTTCGAAACCAAAGCATCAATATCATGTATCCTAAAGAGAAGACTAT
*
1044628 GTTTATGGTGCCCAATCCTGAA
257 GTTTATGGTGCCTAATCCTGAA
1044650 TGGGGATTGG
Statistics
Matches: 4005, Mismatches: 780, Indels: 638
0.74 0.14 0.12
Matches are distributed among these distances:
458 2 0.00
459 27 0.01
460 223 0.06
461 390 0.10
462 126 0.03
463 3 0.00
465 3 0.00
470 1 0.00
472 49 0.01
473 434 0.11
474 464 0.12
475 159 0.04
476 457 0.11
477 1035 0.26
478 16 0.00
482 3 0.00
483 3 0.00
484 5 0.00
485 1 0.00
486 2 0.00
487 6 0.00
488 1 0.00
489 6 0.00
490 35 0.01
491 23 0.01
492 14 0.00
493 23 0.01
494 3 0.00
495 2 0.00
496 2 0.00
497 2 0.00
498 4 0.00
499 10 0.00
500 24 0.01
501 9 0.00
502 10 0.00
503 13 0.00
504 14 0.00
505 7 0.00
506 9 0.00
507 6 0.00
508 5 0.00
509 16 0.00
510 5 0.00
512 1 0.00
513 2 0.00
514 4 0.00
515 4 0.00
516 1 0.00
517 12 0.00
518 22 0.01
519 12 0.00
520 8 0.00
521 13 0.00
522 2 0.00
523 7 0.00
524 12 0.00
525 8 0.00
526 4 0.00
527 13 0.00
528 7 0.00
529 3 0.00
530 2 0.00
531 10 0.00
532 5 0.00
533 8 0.00
534 10 0.00
535 1 0.00
536 6 0.00
540 1 0.00
543 7 0.00
544 16 0.00
545 7 0.00
546 7 0.00
547 9 0.00
548 8 0.00
549 9 0.00
550 20 0.00
551 14 0.00
552 16 0.00
553 10 0.00
554 8 0.00
555 3 0.00
556 2 0.00
557 2 0.00
558 1 0.00
559 12 0.00
560 9 0.00
561 8 0.00
562 7 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (476 bp):
TTTAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAAT
CATCAATATCATTTATCATAATGAGGAGAATGTGTTTATAGTGCTAAATCACAAAATGAACGAAG
ATCCTTACTAGAATCCATGTTTGCCTCATATGAGGCATGAACTTAGACTTTACAAAAATTGTGGG
AAAAAAAGCCTTTCTTTCGAAACCAAAGCATCAATATCATGTATCCTAAAGAGAAGACTATGTTT
ATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGGTTGTCTTATTTAAGAAG
CAAACTTTGATTCTATCAAAAACGGTGGAAATAAAAGCTTTTGTTACGACACCAAAGCATCAATG
TCAAGCATCCTAATGAAGGGAATAAATTCTTAGTTCCCAATCTTGAAAAGAATGAAGACTATTAC
GAAAAACAATGCTTGCCTTAT
Found at i:1041325 original size:91 final size:91
Alignment explanation
Indices: 1041170--1041345 Score: 334
Period size: 91 Copynumber: 1.9 Consensus size: 91
1041160 CAAAAATTGG
1041170 TGGGAAAAAAGCCTTTCTTGTGAAACTAAAGCATCAATATCATAAATCTTAATAAGAAGACTATG
1 TGGGAAAAAAGCCTTTCTTGTGAAACTAAAGCATCAATATCATAAATCTTAATAAGAAGACTATG
1041235 TTTATGGTGCCTAATCCTGAGAAGAA
66 TTTATGGTGCCTAATCCTGAGAAGAA
* *
1041261 TGGGAAAAAAGCCTTTCTTGTGAAACTAAAGCATCAATATCATGAATCTTAATGAGAAGACTATG
1 TGGGAAAAAAGCCTTTCTTGTGAAACTAAAGCATCAATATCATAAATCTTAATAAGAAGACTATG
1041326 TTTATGGTGCCTAATCCTGA
66 TTTATGGTGCCTAATCCTGA
1041346 AAAGGATGAG
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
91 83 1.00
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.30
Consensus pattern (91 bp):
TGGGAAAAAAGCCTTTCTTGTGAAACTAAAGCATCAATATCATAAATCTTAATAAGAAGACTATG
TTTATGGTGCCTAATCCTGAGAAGAA
Found at i:1044257 original size:935 final size:934
Alignment explanation
Indices: 1041266--1044646 Score: 3716
Period size: 935 Copynumber: 3.6 Consensus size: 934
1041256 AAGAATGGGA
* * *
1041266 AAAAAGCCTTTCTTGTGAAACTAAAGCATCAATATCATGAATCTTAATGAGAAGACTATGTTTAT
1 AAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCTTAATGAGAAGACTATGTTTAT
* * *
1041331 GGTGCCTAATCCTGAAAAGGATGAGGATTAGTATGAGTACA-CATAAGAATGAGGATTAGTCTTA
66 GGTGCCTAATCCTAAAAAGAAT-AGGATTAGTATGACTA-ATCAT--G--T-----TT-GTCTTA
* * *
1041395 TTTAAAAGACGAACTTTCG-TTCTATCAAAAATGGTGGAAAGAAAAGCC-TTTCTTGCAACACCA
119 TTTAAAAGACAAACTTT-GATTCTATCAAAAACGGTGGAAAGAAAA-CCTTTTCTTGCGACACCA
* * * * * *
1041458 AAGCATCAATGTCATCTATCATAACGAAGGGAAAGTGTTTTTGGTTCCCAATCTTGAAAAGAATT
182 AAGCATCAATGTCATGTGTCCTAATG-AGGGAAAGTGTTCTTGGTTCCCAATCTTGAAAAGAATG
* * * * * * * ** *
1041523 GAGACTATTTTGATAATC-AACGCTTGCCTTATTTAAGGGATGAACTACGATTTTAAGGATAATA
246 GAGACTGTTATGAGAATCGATCGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATA
* * * * * *
1041587 GGGTAAAGAAAATATTTTCATGCAACAAAAAATCTTCAATATCATTTATCCTAATGAGAAGAAAG
311 GGGCAAAGAAAAGATTTCCATGCAA-AAAAAATCATCAATATCATTTATCCTAATGAGGAGAATG
* * * *
1041652 T-TTTATAGTGCCTAATCATAAAATAAGTGGAGATCATTGCTAGAATCCATGTTTGTCTCATTTG
375 TGTTTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG
* * * * ** ** *
1041716 AGGCACGAACTTAGACTTTACAAAAATTGGTAAGACGAAAGCATTTCTTGTGAAACCATTGCATT
440 AGGCACGAACATAGACTTTACAAAAATTGGTGAGAAGAAAGCCTTTCTTGCAAAACCAAAGCATC
** * * * *
1041781 AATATTGTGTATCCTAATGAGAAGACTATGTTTTTGGTCCCTAATCCTAAGAAAGAATGGAGATT
505 AATATCATGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCT-A-AAAGAATGGGGATT
* *
1041846 TGTATG-ATTATTCACGTTTGTCATATTTAAGAGGCAAACTTTGATTCTATCAAAAACGGTGGAA
568 AGTATGCA-TA-T-A------T-A-A-TTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAA
* * *
1041910 AGAAAAGCTTTTCTTGCAACACCAAAGCATTAATGTCATGTATCCTAATGAAGGGAATATGTTTT
621 AGAAAA-CTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTT
* * * * * * * * *
1041975 TGGTTCCCAATCTTGAAAGGAATGGAGACTATTATGAGTATTAATTCTTGTCATATTTGAGGGAT
685 TGGTTCCCAATCTTGAAAAGAATGAAGACTGTTACGAGAATCAATACTTGCCTTATTTGAGGGAT
* * *
1042040 GAATTTTGATTTTAAGGAAAACAGGGTAAAAAAAAGATTTCCATGCAAAAGAAAATCATCAATAT
750 GAA-TTTGATTTT-AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATAT
** * *
1042105 CATTTATCCTAA-AGAGGAGAATGTGTTTATAGTGCCTAATTGCAAAATGAATTATGATCATTAC
813 CATTTATCCTAATA-AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC
** * ** * *
1042169 TAGAGCCCATGTTTGTCTCATTTGAGACACAAACCTAAACTTTACAAAAATT-GGTGGG
877 TAGAATCCATGTTTGTCTCATTTGAGGCATGAACATAGACTTTACAAAAATTAGG-GGG
* ** * *
1042227 AAGAAAGCC-TTCATGCGAAAGTAAACCATCAATATCATGTATCTTTATGAGAAGACTATGTTTA
1 AA-AAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCTTAATGAGAAGACTATGTTTA
* * * * * * *
1042291 TGGTACTTAATCCTAAAAAGAATGGGAATTAGTATGACTATTAAAGTTTGTCTTATTTAACAGAC
65 TGGTGCCTAATCCTAAAAAGAATAGG-ATTAGTATGACTAATCATGTTTGTCTTATTTAAAAGAC
* * * * * **
1042356 AAATTTTAATTTTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTATGACACCAAAGCATC--T-T
129 AAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGT
* * * * * * *
1042418 GA--TG----AAT---GGAAAG-CTTCTTGGTTCCCAATCTGGAAAAGAGTAGAGACCGTTGTGA
194 CATGTGTCCTAATGAGGGAAAGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGA
* * * * * *
1042473 GAATCGA-CGCTTGTTATATTTATGGGATGAGTTTTTATTTTAAGGAAATTAGGGCAGAGAAAAG
259 GAATCGATCGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAG
* *
1042537 ATTTCTATGCAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGATTGTGTTTATTA-TGCC
324 ATTTCCATGCAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA-TAGTGCC
* * *
1042601 TAATTACAAAATGAAA-GAAGATCATTACTAGAATCCATGTTTGTCTCATTTTAGGCACGAACTT
388 TAATCACAAAAT-AAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACAT
* ** * *
1042665 AGACTTTACAAAAATTGGTGAGAAGAAAGCTTTTCTTGTGAAACCAAAGCATTAATATCGTGTAT
452 AGACTTTACAAAAATTGGTGAGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTAT
* *
1042730 CCTAATGAGAAAACTATGTTTATGGTGCATAACCCTGAAAAGAATGGGGATTAGTATGACTTTTC
517 CCTAATGAGAAAACTATGTTTATGGTGCCTAATCCT-AAAAGAATGGGGATTAGTATG-------
* * * * *
1042795 ACATTTGTTATATTTAAGAGACAAGCTTTGATTCTATCAATAATGGTGGAAA-AAAACTTTTCTT
574 -CA--T-ATATAATTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACTTTTCTT
*** * *
1042859 GCGACACCAAAGCATCAATGTCATGTATCCCCCTGAAGGGAATGTGTTTTTGGTTCTCAATCATG
635 GCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTG
* * * *
1042924 AAAAGAATAAAGATTGTTACGAGAATCAATGCTTGCTTTATTTGAGGGATGAACTTTGATTTTGA
700 AAAAGAATGAAGACTGTTACGAGAATCAATACTTGCCTTATTTGAGGGATGAA-TTTGATTTT-A
* * *
1042989 GGAAAATAGGGCAAAGAAAAGATTTTCATGTAAAAGAAAATCATCAACATCATTTATCCTAATAA
763 GGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAA
1043054 GGAGAATGTGTTTATAGTGCCTAATCAC-AAATGAATGAAGATCATTACTAGAATCCATGTTTGT
828 GGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGT
* *
1043118 CTCATTTGAGGCATGAACATAGACTTTACAAAAATTAGTAGGA
893 CTCATTTGAGGCATGAACATAGACTTTACAAAAATTAG-GGGG
* * *
1043161 AAAAAGCCTTTCTTACGAAACCAAAGCATCAATATCATGTAT-TCCAATGAGAATACTATGTTTA
1 AAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCT-TAATGAGAAGACTATGTTTA
** * * ** * * * * * * *
1043225 TGGTGCCTAATGTTGAAAATAACGGGGATTTGTATCACGATTTATGTCTGTTTTATTTAAAAGAC
65 TGGTGCCTAATCCTAAAAAGAA-TAGGATTAGTATGACTAATCATGTTTGTCTTATTTAAAAGAC
* ** * * *
1043290 AAACTTTGATTTTATCAAAAACGGCAGAAAGAAAACCTTTTCTTGTGATACCAAAGCATCAATGC
129 AAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGT
*
1043355 CATGTGTCCTAATGAGGGGAAGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGA
194 CATGTGTCCTAATGAGGGAAAGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGA
* * *
1043420 CAATCGATC-ATTGTCATATTTAAGGGATGAATTTTGATTTTGAGGAAAATAGGGCAATA-AAAA
259 GAATCGATCGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAA-AGAAAA
* * *
1043483 GATTTCCATGCAAAAAAATTCATCATTATCATTTAT-TTGAATGAGGAGAATGTGTTTATAGTGC
323 GATTTCCATGCAAAAAAAATCATCAATATCATTTATCCT-AATGAGGAGAATGTGTTTATAGTGC
*
1043547 CTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACAT
387 CTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACAT
* * * **
1043612 AGACTTTGCAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAAACAAAGTGTCAATATCATGTA-
452 AGACTTTACAAAAATTGGTGAGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTAT
* *
1043676 CCTTTATGAGAAAACTATGTTTATGGTGCCTAATCCTAAAAGGAATGGGGATTGGTATGCA-A-A
517 CC-TAATGAGAAAACTATGTTTATGGTGCCTAATCCTAAAA-GAATGGGGATTAGTATGCATATA
* * *
1043739 -AATTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAGAACCTTTTCTTGTGACCCCA
580 TAATTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGA-AAACTTTTCTTGCGACACCA
* *
1043803 ATGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATG
644 AAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATG
* * * * * *
1043868 AAGACTGTTACAAGAATCAACACTTGCCTTATTTCAAGGATGAATTTCAATTTTATGAAAAATAG
709 AAGACTGTTACGAGAATCAATACTTGCCTTATTTGAGGGATGAATTT-GATTTTA-GGAAAATAG
* * *
1043933 GGCAAAGAAAAGATTTCCAAGCAAAAGAAAATCATCAATATCATTTATCATAATTCA-GAGAATG
772 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAA-TAAGGAGAATG
* * * *
1043997 TGTTTATAGTGCCCAATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTATGTCTGATTTG
836 TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG
*
1044062 AGGCATGAACTTAGACTTTACAAAAATTAGGGGG
901 AGGCATGAACATAGACTTTACAAAAATTAGGGGG
* * * *
1044096 AAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCGTAATGAGAAAACTATGTTTAT
1 AAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCTTAATGAGAAGACTATGTTTAT
* * *
1044161 GGTGCCTAATCCTAAAAAGAATAGGTATTGGTATGACTAATCATGTTTGTCTTATTTTAGAGACA
66 GGTGCCTAATCCTAAAAAGAATAGG-ATTAGTATGACTAATCATGTTTGTCTTATTTAAAAGACA
* * *
1044226 AACTTTGATTCTATTAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACCCCAAAGCATCAATGTC
130 AACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTC
* * * * * * **
1044291 TTGCGTCCTAATGAAAGGAATGCGTTTTTGGTT-CCAATCTTGAAAAGAATGGAGACTGTTACAA
195 ATGTGTCCTAATG-AGGGAAAGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGA
* * * * *
1044355 GAATCAAT-GCTTG-CTTTATTTCAGGGATAAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAA
259 GAATCGATCGCTTGTC-ATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
* * * * *
1044418 GATTTCCAAGCAAAAGAAAATCATCAATATCATTTATCCTAGTAAAGAGAATGTGTTTATTGTGC
323 GATTTCCATGCAAAA-AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
** * *
1044483 CTAATCAC-AAATTTATGAAGATCATTACTAGAGTCACA--TTTGTCTCATTTGAGGCAGGAACA
387 CTAATCACAAAATAAATGAAGATCATTACTAGAATC-CATGTTTGTCTCATTTGAGGCACGAACA
* * *
1044545 TAGACTTTTCAAAAATTGGTG-GTGAGAAAGCCTTTCTTGCAAAACCAAAGCGTCAATATCATGT
451 TAGACTTTACAAAAATTGGTGAG-AAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGT
* * *
1044609 ATCCTTATGAGAAGACTATGTTTATGGTGCCCAATCCT
515 ATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCT
1044647 GAATGGGGAT
Statistics
Matches: 2056, Mismatches: 301, Indels: 153
0.82 0.12 0.06
Matches are distributed among these distances:
933 108 0.05
934 470 0.23
935 499 0.24
936 226 0.11
937 247 0.12
938 12 0.01
939 5 0.00
942 2 0.00
943 3 0.00
945 2 0.00
946 21 0.01
947 298 0.14
948 4 0.00
949 1 0.00
950 1 0.00
951 62 0.03
952 2 0.00
957 1 0.00
959 1 0.00
960 2 0.00
961 83 0.04
962 6 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.31
Consensus pattern (934 bp):
AAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCTTAATGAGAAGACTATGTTTAT
GGTGCCTAATCCTAAAAAGAATAGGATTAGTATGACTAATCATGTTTGTCTTATTTAAAAGACAA
ACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCA
TGTGTCCTAATGAGGGAAAGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGA
ATCGATCGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
TTCCATGCAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
TCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACATAGAC
TTTACAAAAATTGGTGAGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTA
ATGAGAAAACTATGTTTATGGTGCCTAATCCTAAAAGAATGGGGATTAGTATGCATATATAATTA
AGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACTTTTCTTGCGACACCAAAGCATC
AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGAAGACTG
TTACGAGAATCAATACTTGCCTTATTTGAGGGATGAATTTGATTTTAGGAAAATAGGGCAAAGAA
AAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGT
GCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAAC
ATAGACTTTACAAAAATTAGGGGG
Found at i:1050658 original size:42 final size:42
Alignment explanation
Indices: 1050602--1050720 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
1050592 TTCTTCTCTC
* * *
1050602 CTCCTTCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
1050644 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
1050686 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
1050721 TTGAGGGCTA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.08, C:0.45, G:0.03, T:0.44
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:1050661 original size:12 final size:11
Alignment explanation
Indices: 1050635--1050710 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
1050625 TCTATTATCT
*
1050635 CTCCTGTCTCTC
1 CTCCTATCTC-C
1050647 CTCCTATCATCC
1 CTCCTATC-TCC
1050659 CTCCTATCT--
1 CTCCTATCTCC
*
1050668 CTACTATCT--
1 CTCCTATCTCC
*
1050677 CTCCTGTCTCTC
1 CTCCTATCTC-C
1050689 CTCCTATCATCC
1 CTCCTATC-TCC
*
1050701 CTCCTCTCTC
1 CTCCTATCTC
1050711 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:1050662 original size:24 final size:24
Alignment explanation
Indices: 1050626--1050711 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
1050616 CCTCCTCTCT
* *
1050626 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
1050650 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
1050671 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
1050692 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
1050712 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:1050686 original size:18 final size:18
Alignment explanation
Indices: 1050617--1050687 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
1050607 TCTGTCATCC
* *
1050617 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
1050635 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
1050657 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
1050677 CTCCTGTCTCT
1 CTCCTGTCTCT
1050688 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:1053363 original size:474 final size:476
Alignment explanation
Indices: 1052341--1059437 Score: 6223
Period size: 474 Copynumber: 14.9 Consensus size: 476
1052331 CATCAGGAAG
* * * * * *
1052341 TAGGGTAAAGAAAAGATTTCCACGCAAAAGAAAAACATCAATATCGTTTATCCTAAAGAGGAGAA
1 TAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
* * * * *
1052406 TGTGTTTATAGTGCCTAATCACAAAATTAAGGAAAATCATTACTAGATTCCATGTTTGTCTCACT
66 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATT
* * * * *
1052471 TGTGGCATGAAGTTAGACTTTACGAAAATTGGTGGGAAAAAAGCCTTTCTTTCAAAGCCAAATCA
131 TGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAATCA
*
1052536 TCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTCAGAAA-AATGGGGA
196 TCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT-AAAAAGAATGGGGA
* * * * *
1052600 TTAGTATGAGTCTACATGGTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAAGGGTTGA
260 TTAGTATGAGTATTCATGGTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGA
* * * * * * *
1052665 AATAAAAGTTTTTCTTGTGACACTAAAGCATTAATGTCACGCATCCTAATGAAGGGAATGTATTC
325 AAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTGTTC
* * *
1052730 TTGGTTCCCAATCTAGAAAAGAATGAAGACTATTACGACAATCGATTCTTGTCATATTTAAGGGA
390 TTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGACAATCGATTCTTGTCATATTTAAGGGA
* **
1052795 TGAACTTTGATTTTTTGGGAAAA
455 TGAATTTTGA-TTTTAAGGAAAA
* * * *
1052818 -AGGGCAAAGAAAAG-GTTTCTATGCAAAAGAAAAACATCAATATCGTTTATGCTAATGAGGAGA
1 TAGGGCAAAGAAAAGATTTTC-ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA
* * * * *
1052881 TTGTGTTTATAGCGCCTAATCACAAAATGAATGAAAATCCTTACTAGATTCCATGTTTGTCTCAT
65 ATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCAT
* * *
1052946 TTGAGGCGTGAACTTAGACTTCAC-AAAATTGGTGGGAAAAAAGCCTTTCTTTCAAAACCAAATC
130 TTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAATC
** * * *
1053010 ATCAATATCAAGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTAATCCAAAAAAGAATTGGGA
195 ATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGA
* * * ** **
1053075 TTAGTATGA-TAATTCATGGTTGTCTTGTATAAGAGAAAAACTTTGATTCTATCAAAAAAAGTAA
260 TTAGTATGAGT-ATTCATGGTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGG
* * * *
1053139 AAAGAAAAGCTTTTCTTACGATAGC-AAGCATCAATGTCATGCATCCTAATGAAGGGAATATGTT
324 AAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTGTT
* *
1053203 CTTGGTTCCCAATCTTGAAAAGAATGAAGACTGTTACGACAATCGATTCTTGTCATATTTAAGGA
389 CTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGACAATCGATTCTTGTCATATTTAAGGG
*
1053268 ATGAATTTTGATTTTACGGAAAA
454 ATGAATTTTGATTTTAAGGAAAA
*
1053291 TAGGGCAATA-AAAAGATTTTCATGCAAAAGAAAATCATCATTATCATTTATCCTAATGAGGAGA
1 TAGGGCAA-AGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA
* * *
1053355 ATGTGTTTATAATGCCTAATCACAAAATG-A-G-TGATCATTACTAGAATCCATGTTTGTCTTAT
65 ATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCAT
* * ** * * *
1053417 TTGAGACACGAACTTAGACTTTGTAAAAATTGGTGGGAAGAAAGTCTTTCCTGCAAAACCAAAGT
130 TTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAA-T
* * * * *
1053482 -GTCAATATCGTGTATCCTTATGAGAGGACTATGTTTATGGTGCCTAATCCTAAAAAGAATAGGT
194 CATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGG
* * * * * *
1053546 ATTGGTATGACTATTCATGTTTGTCTTATTCAAGAGATAAACTTTGATTTTATCAAAAACGGTGG
259 ATTAGTATGAGTATTCATGGTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGG
** * * * * *
1053611 AAAGAAAAGCTTTTCTTATGACCCCAAAGCATCAATGTCATGTATCTTAATGAAAGAAATGTGTT
324 AAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTGTT
* * * * * * * * * * *
1053676 TTTGGTTCCCAATCTTGAAATGAATGGAGTCTGTTACAAGAATCAATGCTTGCCTTATTTCATGG
389 CTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGACAATCGATTCTTGTCATATTTAAGGG
*
1053741 ATGAATTTTGATTTTATGGAAAA
454 ATGAATTTTGATTTTAAGGAAAA
* * ** * * * * * * *
1053764 TAGGGTAAAGAAAAGATTTCCAACCAAAAGAAAATTATTAGTACCATTTATCATAATTAAGAGAA
1 TAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
* * * * * * *
1053829 TGTGTTTATAGTGCCTAATTAGAGAATGATTGAATATCCTTACTAGAACCCATGTTTGTCTCATT
66 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATT
* * * *
1053894 TGAGGCATGAACTTTGGCTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTCGCAAAACCAAAGCA
131 TGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAATCA
* * **
1053959 TCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATGCTAAAAATAATAAGGAT
196 TCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGAT
** * * * *
1054024 TAGTACAACG-ATTCATGTTTGTATTATTT-GGAAGACAAACTTTGATTCTATCAAAAAACGGTA
261 TAGTATGA-GTATTCATGGTTGTCTTATTTAAG-AGACAAACTTTGATTCTATC-AAAAACGGTG
* * * * * * * * * * *
1054087 GAAGGAAAACCATGTCTTGTGACACCAAAGCATTAACGCCATGTATCCTAACGAAGGGAAT-TTT
323 GAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTGT
* ** ** * * * **
1054151 TCTTGGTTCCCAATCTTCAAAAGGGTGGAGACAATTGCAAGAATCGATGGTTGTCATATTTAAGG
388 TCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGACAATCGATTCTTGTCATATTTAAGG
* *
1054216 GTTGAATTTTTATTTTAAGGAAAA
453 GATGAATTTTGATTTTAAGGAAAA
* *
1054240 T------------AGATTTCCATGCAAAA-AAAATCATCAATATCATTTATCTTAATG-GAGAGA
1 TAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAG-GAGA
* * *
1054291 ATGTGTTTATTGTGCCTAATCACAAAATGAATGAAGATCATTACTGGAATCAATGTTTGTCTCAT
65 ATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCAT
* * * * *
1054356 TTGAGGGACGAACTTAGACTTCACAAAACTTGGT-GGAAAGAAACCCTTTCTTGCAAAACCAAAG
130 TTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAA-AAAGCCTTTCTTGCAAAACCAAA-
* * * * * * *
1054420 T-GTCAATATCGTGTATCCTTATGAGAAAACTAGGTTTATTGTGCCTAATCCTGAAAAGAATGAG
193 TCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGG
* * * ** ** * *
1054484 GATTAGTTTGAGTACTCTTATTTGTCTTATTTAAGAGATGAACTTTGATTCTTTCAAAAATGGTG
258 GATTAGTATGAGTATTCATGGTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTG
* * * * * * *
1054549 CAAAGAAAAGCCTTTCTTGCGACACTAAAGCATCAGTGTCAT-CTATCCTAACGAAGGAAAAGTG
323 GAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGC-ATCCTAATGAAGGGAATGTG
* * * * * * * * ** * * * *
1054613 TTTTTGGTTCCCAATCATGAAAAGAATTGAGATTGCTATGATAATCAACGCTTGCCCTAATTATG
387 TTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGACAATCGATTCTTGTCATATTTAAG
*
1054678 TGATGAATTTTGATTTTAAGGAAAA
452 GGATGAATTTTGATTTTAAGGAAAA
* * * * * *
1054703 TAAGGTAAAGAAAACATTTTCAT-C-AAA-AAAACCATCAATATC-TTTATCATAATAAGGAGAA
1 TAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
* * * *
1054764 --TATTTACAGTGCCTAATCACAAAATGAACGAAGATCATTACTTGAATCCATGTTTGTCTCATT
66 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATT
* *
1054827 TGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTCGCAAAACCAAAGCA
131 TGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAATCA
* * * * * * *
1054892 TCAATATCGTGTTTCCTAATGAGAAGACTATGTTTACGGTGCCCAATGCAAAAAATAATGTGGAT
196 TCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGAT
* * * * * *
1054957 TAGCATGACG-ATTCTTGTTTGTGTTATTTGAGAGACAAACTTTGATTCTATCAAAAAACGATGG
261 TAGTATGA-GTATTCATGGTTGTCTTATTTAAGAGACAAACTTTGATTCTATC-AAAAACGGTGG
* * * *
1055021 AAAGAAAA---TATGTT-----------GC--C-ATG---T--ATCCTAATGAAGGAAATATGTT
324 AAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTGTT
* * * * * * *
1055064 CTTTGTTCCCAATCCTAAAAAGAATGGAGATTGTTATGAGAATCGATTCTTATCATATTTACA-G
389 CTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGACAATCGATTCTTGTCATATTTA-AGG
1055128 GATGAATTTTGATTTTAAGGAAAA
453 GATGAATTTTGATTTTAAGGAAAA
* * * ** * *
1055152 TAAGGCAAAGATAATATTTTCACACAAAAGAAAATCATAAATATCATTTATCATAATGAGGAGAA
1 TAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT-----G-A
* * *
1055217 TGCGTTTATAGTGCCTAAAATGTGTTTATAGTGCCTATTCACAAAATAAATGAAGATCCTTACTA
60 -G-G-----A--G-----AATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
* * * *
1055282 GAATTCATGTTTGTCTCATTTGAGACATGAACTTAAACTTTACAAAAATTGGTGGGAAGAAAGCC
111 GAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCC
* * * * * *
1055347 TTTCTTGCGAAACCAAAGCTTCAATATCATGTATTCTAATGAGAAGACTAAGTTTATGGTGCCTA
176 TTTCTTGCAAAACCAAATCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTA
* ** * * * *
1055412 ATCCTGAAAACTATAGGGATTAGTATAAGTCTTCATGGTTGTCTTATTTTAGAGGA-AAACTTTG
241 ATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGGTTGTCTTATTTAAGA-GACAAACTTTG
* * * * *
1055476 ATTCTATCAAAAATGGTGGAAATAAATGTTTTTCTTGCGACACCAAAGCATTAATGTCATGCATC
305 ATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGCATC
* * * * * * *
1055541 CTAATGAAAGGAATGTATTCATGGTTCCCAA-CTTGAAAAGAATGGCGACTGCTATGATAATCGA
370 CTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGACAATCGA
* * * *
1055605 TTCTTGCCATATTTAAGGGATGAACTTTGATTTTATGGGAAA
435 TTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAA
* * * * * * * *
1055647 TAGGGCAAAGAAAAGA-TTTCTATGCAGATGAAAAACGTCAATGTCGTTTACCCTAATAAGGAGA
1 TAGGGCAAAGAAAAGATTTTC-ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA
* * * * *
1055711 TTGTGTTTATAGTGCCTAATCACAAAATCAATGAAAATCCTTACTAGATTCCATGTTTGTCTCAT
65 ATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCAT
***
1055776 TTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGG-AAAAAGCCTTTCTTTTGAAACCAAATC
130 TTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAATC
* * *
1055840 ATCAATATCATGTATCTTAAAGAGAAGACTATGTTTATGGTGCCTAAT-CTACAAAAGAATGGGG
195 ATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTA-AAAAGAATGGGG
* * * * * *
1055904 ATTAGTATGATTATTCATGGTTGTCTTATATAAGAGACAAACTTTCATTTTATCCAAAATGGTGG
259 ATTAGTATGAGTATTCATGGTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGG
* * *
1055969 AAAGAAAAGCTTTTCTTACGACAGCAAA-CATCAATGTCATGCATCCTAAAGAAGGGAATGTGTT
324 AAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTGTT
* * * **
1056033 CTTAGTTCCCAATCTTGAAAAGAATGGAGACTTTTACGACAATCGATCCTCATCATATTTAAGGG
389 CTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGACAATCGATTCTTGTCATATTTAAGGG
*
1056098 ATGAATTTTGATTTTATGGAAAA
454 ATGAATTTTGATTTTAAGGAAAA
* * ** * *
1056121 TAGGGCAAAGAACAGATTTT-GTGCAAAAGAAAATCATCGTTATTATTTATCCTAACGAGGAGAA
1 TAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
* * * *
1056185 TGTGTTTATAGTCCCTAATCACAAAATGAATGAAGATCACTACTAGAATCCATGTTTATCTAATT
66 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATT
* * * * * * * *
1056250 TGAGGCACGAACTTGGACTTTGCAAAAATTGATGGGTAGAAAGCATTTCTTGGAAAACCAAAGT-
131 TGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAA-TC
* * * * * *
1056314 GTCAATATCGTGTATCCTTATGAGATGACTATGTTTATGGTGCCGAATCTTGAAAAGAATGGGGA
195 ATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGA
* ** * ** *
1056379 ATAGTACAAGTCTTTGTGGTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAACGGTGGA
260 TTAGTATGAGTATTCATGGTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGA
* * * * ** *
1056444 AAGAAAAGCTTTTCTTGCGAC-CGC-AGGCATGAACTTAGACTTTGCA--AAAATTGGCAGGTAG
325 AAGAAAAGCTTTTCTTGCGACAC-CAAAGCATCAA--T-GTC-ATGCATCCTAA-T-GAAGG--G
* *** ** ** * * * * * * * *
1056505 AAAGCCT-TTCTTGGAAAACCAA-AGTGTCAA-TATCGTGTA-TCCTTATGAGATGACTTTGTTT
381 AATG--TGTTCTTGG-TTCCCAATCTTGAAAAGAATGGAG-ACT-GTTACGACA--A--TCGATT
* * * * * * * * * * **
1056566 ATGGTGCCTAATCCTCAAAAGAATGGGGATTAGTATGAGTCTTCATGGTTGTCTTATT
437 CTTGT-CAT-AT--T-TAAGGGAT--GAATT--T-TGA-T-TTTA-AG--G---AAAA
**** **
1056624 TAAGAGGCAAA-CTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGATAGCAAAC
1 T-AG-GGCAAAGAAAAGATT-T-TC--ATGCA----AAAGAAAA--------T-C-AT--C--A-
*** * * * *** *
1056688 ATTAATGCCAGGCATGCTAATGAAGG-GAATGTGTTGT-TCGCT-CTCAAATTTGAGAA-GAATG
41 A-T-AT--CATTTATCCTAATG-AGGAGAATGTGTT-TATAG-TGC-CTAATCACAAAATGAATG
* ** * * * ** * * * * *
1056749 GAGATTGTTA-GACAATCGATCCTTG--TCATATTGAAGGAATGAATTTTGATTTTAAGAAAAAT
98 AAGATCATTACTAGAATCCATGTTTGTCTCAT-TTG-AGGCATGAACTTAGACTTT-ACAAAAAT
* * ** ** ** * ** *
1056811 AAGGCAT-TG--AAAAGATTTTAATGCAAAAGAAAATCATCATTATTATTTATCCTAATGAGAAG
160 -TGG--TGGGAAAAAAGCCTTTCTTGCAAAACCAAATCATCAATATCGTGTATCCTAATGAGAAG
* * * * * *
1056873 AATGTGTTTATAGTG-----T-CTAAACA-AA-----A--A--ATGACG-ATTCATGTTTGTGTT
222 ACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGA-GTATTCATGGTTGTCTT
* * * * *
1056921 ATTTGAGAGATAAACTTTGATTCGATACAAAAACGGTGGAAAG-AAAGTCATTTCTTGTGACACC
286 ATTTAAGAGACAAACTTTGATTCTAT-CAAAAACGGTGGAAAGAAAAG-CTTTTCTTGCGACACC
* * * * * * **
1056985 AAAGAATCAATGCCATGTATCCTAATGAAGGGAATGT-TTCTTGCTTCCTAATCTTAAAAAAGGG
349 AAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTT-GAAAAGAA
* * * * * * * * *
1057049 TGGAGACTATTGCAAGAATCGATCCTTGTCATATTTACGGGTTGAATTTTTATTTTAAGGGAAA
413 TGGAGACTGTTACGACAATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAA
* * * * * **
1057113 TAGAGCAAAGAAAAGATTTCCATGCAAAAAAAAATCATCGATATCATTTATCCAAACAAGGAGAA
1 TAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
* * * * **
1057178 TGTGTTTTTTGTGCCAAATCACAAAATGAATGAAGATCATTACTGGAATCCACATTTGTCTCATT
66 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATT
* * * *
1057243 TGATGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTCGCAAAACCAAAGCA
131 TGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAATCA
* * * *
1057308 TCAATATCATGTCTCCTAAGGAGAAGACTATGTTTATGGTGCCTAATGCTAAAAA-AATGGGGAT
196 TCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGAT
* * * * * * *
1057372 TAGT-TCAACG-ATCCATGTTTGTGTTATTTGAGAGACAAACTTTGATTCTATCAAAAAATGATG
261 TAGTAT-GA-GTATTCATGGTTGTCTTATTTAAGAGACAAACTTTGATTCTATC-AAAAACGGTG
* * * * ** * *
1057435 GAAAGAAAACCTTTTCTTGTGATACCAAAGCATCAATGCCATTTATCCTAATGAAAGCAATGTGT
323 GAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTGT
* * * * * *
1057500 TCTTAGTTCCCAATCCTGAAAAAAATGGAGATTGTTATGACAATCGATTCTTATCATATTTAAGG
388 TCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGACAATCGATTCTTGTCATATTTAAGG
1057565 GATGAATTTTGATTTTAAGGAAAA
453 GATGAATTTTGATTTTAAGGAAAA
* * * * * * * * *
1057589 TAGGGCAAAGATAATATTTTCACGTAAAAGAAAATCGTAAATATCATTTGTCATAACGAGGAGAA
1 TAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
* * *
1057654 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCCTTGCTAGAATTCATGTTTGTCTCATT
66 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATT
* * * * *
1057719 TAAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCTTTTCTTACGAAACCAAAGCA
131 TGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAATCA
* * *
1057784 TCAATATCGTGTATCCTAATGAGAAGGCTATGTTTATGGTGCCTAATCCTGATAAGAATGGGGAT
196 TCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGAT
* * *
1057849 TAGCATGAGTCTTCATGGTTGTCTTATTTAAGAGGA-AAACTTTGATTCTATC-AAACCTGGTGG
261 TAGTATGAGTATTCATGGTTGTCTTATTTAAGA-GACAAACTTTGATTCTATCAAAAAC-GGTGG
* * *
1057912 AAATAAAAGTTTTTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTATT
324 AAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTGTT
* * * * * *
1057977 CTTGGTTCCAAATGTTGAAAATAGTGGAGACTGTTATGACAATCGATTATTGTCATATTTAAGGG
389 CTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGACAATCGATTCTTGTCATATTTAAGGG
* *
1058042 ATGAATTTTGATTTTACAAG-CAA
454 ATGAATTTTGATTTTA-AGGAAAA
* ** * **
1058065 TAGGGAAAAGAAAAGA-TTTCGATGCGGAAGAAAAACATCAATATCGCTTATCCTAATGAGGAGA
1 TAGGGCAAAGAAAAGATTTTC-ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA
* * * * * * *
1058129 ATGTGTTTATGGTGCTTAATCACAATATGAATGAAAATCCTTACTAGATTCCATGTTTGTCTCAC
65 ATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCAT
* *** *
1058194 TTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGG-AAAAAGCCATTCTTTTGAAACAAAATC
130 TTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAATC
* * *
1058258 ATCAATA-CATGTATCCTAAAGAGAAGACTATGTTTATAGTGCCTAAT-CTAGAAAAGAATGGGG
195 ATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTA-AAAAGAATGGGG
* *
1058321 ATTAGTATGATTATTCATGGTTGTCTT-TTATAAGAGACAAGCTTTGATTCTATCAAAAACGGTG
259 ATTAGTATGAGTATTCATGGTTGTCTTATT-TAAGAGACAAACTTTGATTCTATCAAAAACGGTG
* * * *
1058385 GAAAGAAAAGCTTTTCTCGTGACAACAAA-TATCAATGTCATGCATCCTAATGAAGGGAATGTGT
323 GAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTGT
* *** * * * *
1058449 TCTTAGTTCATTATCTTGTAAAGAATGGAGACTGCTACGACAATTGATCCTTGTCATATTTAAGG
388 TCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGACAATCGATTCTTGTCATATTTAAGG
1058514 GATGAATTTTGATTTTAAGGAAAA
453 GATGAATTTTGATTTTAAGGAAAA
* * * *
1058538 TAGGGCAAAGAAAAGATTTCCATGCAAAATAAATTCATCATTATCATTTATCCTAATGAGGAGAA
1 TAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
* *
1058603 CGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTAATT
66 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATT
* ** * * * * * *
1058668 TTAGGCACAAACTTCGACTTTGCAAAAACTGGTGGGTAGAAAGCCTTTATTGCAAAACCAAAGT-
131 TGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAA-TC
* * ** * *
1058732 GTCAATACCGTGTATCCTTGTGAGATGACTATGTTTATGGTGCCTAATCCTAAAAGGAATGGGGA
195 ATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGA
* * * * * * *
1058797 TTGGTAT-ACTCTTCTTGGTTGTCTTATTTTAGAGGCAAAATTTGATTCTATCAAAAACGGTGGA
260 TTAGTATGAGTATTCATGGTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGA
* ** *
1058861 AAGAAAAGCTTTCCTTGCGACGGCAAA-TATCAATGTCATGCATCCTAATGAAGGGAATGTGTTC
325 AAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTGTTC
* * * * * *
1058925 TTGGTTCCCAATCTTAAAAAGAATGGGGACTATTATGACAATCGATCCTTGTCATATTTAAGGAA
390 TTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGACAATCGATTCTTGTCATATTTAAGGGA
1058990 TGAATTTTGATTTTAAGGAAAA
455 TGAATTTTGATTTTAAGGAAAA
* ** * * * ** *
1059012 TAGGGGAATCAAAAGATTTTCATACAAAAAAAAAACATCGTTATCATTTATCCTAATAAGGAGAA
1 TAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
* * * * * * * *
1059077 TGTGTTTATAGTGTCGAAACACAAAATAAAGGAAGATCATTACTAGAATCTATGTTTGTCTTATC
66 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATT
* * * * * ** * * *
1059142 TGAGGCACGAACTTAAACGTTGCAAAAATTGGCGACAAGAAAGCCTTTCTTGCAAAACAAAAGCA
131 TGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAATCA
* * * * * *
1059207 TCAATATCGTGTATACTTATCAGAAGATTGTGTTTATAGTGCCTAATCCTAAAAAGAATGGGGAT
196 TCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGAT
* * * * * * * * *
1059272 TGGAATGACTGTTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCAATCAAAAACAGTGAAA
261 TAGTATGAGTATTCATGGTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTG-GA
* ** * * * *
1059337 AAGATAAGCTTTTCTTATGAC-CTCAAAGCATCAATGTCATGTATCTTAATGAAAGGAATTTGTT
325 AAGAAAAGCTTTTCTTGCGACAC-CAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTGTT
* * *
1059401 TTTGGTTTCCAATCTTGAAATGAATGGAGACTGTTAC
389 CTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTAC
1059438 AAGAATCAGT
Statistics
Matches: 5319, Mismatches: 1057, Indels: 488
0.77 0.15 0.07
Matches are distributed among these distances:
449 109 0.02
450 1 0.00
451 4 0.00
452 13 0.00
453 11 0.00
454 2 0.00
455 1 0.00
457 2 0.00
458 1 0.00
459 2 0.00
460 16 0.00
461 91 0.02
462 81 0.02
463 297 0.06
464 20 0.00
465 1 0.00
466 2 0.00
467 8 0.00
468 6 0.00
470 203 0.04
471 67 0.01
472 183 0.03
473 630 0.12
474 1139 0.21
475 629 0.12
476 1054 0.20
477 190 0.04
478 11 0.00
480 17 0.00
481 17 0.00
482 6 0.00
483 1 0.00
484 3 0.00
485 5 0.00
486 3 0.00
487 9 0.00
488 9 0.00
489 4 0.00
490 5 0.00
491 3 0.00
492 5 0.00
494 8 0.00
495 106 0.02
496 30 0.01
497 5 0.00
498 2 0.00
500 5 0.00
502 3 0.00
503 3 0.00
504 6 0.00
505 9 0.00
506 3 0.00
507 6 0.00
509 6 0.00
510 8 0.00
511 8 0.00
512 8 0.00
513 8 0.00
514 7 0.00
515 3 0.00
516 41 0.01
517 29 0.01
518 8 0.00
520 1 0.00
521 1 0.00
522 1 0.00
523 2 0.00
525 3 0.00
526 4 0.00
527 1 0.00
529 4 0.00
530 5 0.00
531 24 0.00
532 85 0.02
533 13 0.00
534 1 0.00
535 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (476 bp):
TAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATT
TGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAATCA
TCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGAT
TAGTATGAGTATTCATGGTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAA
AGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTGTTCT
TGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGACAATCGATTCTTGTCATATTTAAGGGAT
GAATTTTGATTTTAAGGAAAA
Found at i:1055243 original size:20 final size:20
Alignment explanation
Indices: 1055215--1055253 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
1055205 TAATGAGGAG
1055215 AATGCGTTTATAGTGCCTAA
1 AATGCGTTTATAGTGCCTAA
*
1055235 AATGTGTTTATAGTGCCTA
1 AATGCGTTTATAGTGCCTA
1055254 TTCACAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.13, G:0.21, T:0.38
Consensus pattern (20 bp):
AATGCGTTTATAGTGCCTAA
Found at i:1056639 original size:216 final size:216
Alignment explanation
Indices: 1056252--1056679 Score: 712
Period size: 216 Copynumber: 2.0 Consensus size: 216
1056242 ATCTAATTTG
* **
1056252 AGGCACGAACTTGGACTTTGCAAAAATTGATGGGTAGAAAGCATTTCTTGGAAAACCAAAGTGTC
1 AGGCACGAACTTAGACTTTGCAAAAATTGACAGGTAGAAAGCATTTCTTGGAAAACCAAAGTGTC
* *
1056317 AATATCGTGTATCCTTATGAGATGACTATGTTTATGGTGCCGAATCTTGAAAAGAATGGGGAATA
66 AATATCGTGTATCCTTATGAGATGACTATGTTTATGGTGCCGAATCCTCAAAAGAATGGGGAATA
** *
1056382 GTACAAGTCTTTGTGGTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAACGGTGGAAAG
131 GTACAAGTCTTCATGGTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAACAGTGGAAAG
1056447 AAAAGCTTTTCTTGCGACCGC
196 AAAAGCTTTTCTTGCGACCGC
* * *
1056468 AGGCATGAACTTAGACTTTGCAAAAATTGGCAGGTAGAAAGCCTTTCTTGGAAAACCAAAGTGTC
1 AGGCACGAACTTAGACTTTGCAAAAATTGACAGGTAGAAAGCATTTCTTGGAAAACCAAAGTGTC
* * *
1056533 AATATCGTGTATCCTTATGAGATGACTTTGTTTATGGTGCCTAATCCTCAAAAGAATGGGGATTA
66 AATATCGTGTATCCTTATGAGATGACTATGTTTATGGTGCCGAATCCTCAAAAGAATGGGGAATA
**
1056598 GTATGAGTCTTCATGGTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAACAGTGGAAAG
131 GTACAAGTCTTCATGGTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAACAGTGGAAAG
1056663 AAAAGCTTTTCTTGCGA
196 AAAAGCTTTTCTTGCGA
1056680 TAGCAAACAT
Statistics
Matches: 196, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
216 196 1.00
ACGTcount: A:0.32, C:0.14, G:0.23, T:0.31
Consensus pattern (216 bp):
AGGCACGAACTTAGACTTTGCAAAAATTGACAGGTAGAAAGCATTTCTTGGAAAACCAAAGTGTC
AATATCGTGTATCCTTATGAGATGACTATGTTTATGGTGCCGAATCCTCAAAAGAATGGGGAATA
GTACAAGTCTTCATGGTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAACAGTGGAAAG
AAAAGCTTTTCTTGCGACCGC
Found at i:1061055 original size:475 final size:475
Alignment explanation
Indices: 1059479--1061829 Score: 3070
Period size: 473 Copynumber: 5.0 Consensus size: 475
1059469 TGTGTTTTTG
* * * *
1059479 GTCTCATTTGAGGCACGGACTTAGACTTTGTAAAAATTAGTGGGAAGAAAG-CTTTTCTTCTGAA
1 GTCTCATTTGAGGCATGAACTTAGACTTTGCAAAAATTGGTGGGAAGAAAGCCTTTT-TTC-GAA
* *
1059543 ACCAAAGCATTAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAG
64 ACCAAAGCATTAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAG
*
1059608 AATGGGGATTAGTATGAGTCTTCATGGTTGTCTTATTTATGAGGAAAACTTTGATTCTATCAAAA
129 AATGAGGATTAGTATGAGTCTTCATGGTTGTCTTATTTATGAGGAAAACTTTGATTCTATCAAAA
* * * *
1059673 CTGGTGGAAATAAAAGTTTTTCTTCCGACACCAAAGCTTTAATGTCATGCATCCTAATGAAGGGA
194 ATGGTGGAAAGAAAAGTTTTTCTTGCGATACCAAAGCTTTAATGTCATGCATCCTAATGAAGGGA
* * *
1059738 ATGTATTCTTGGTTCCCAATCATGAAAAGAATGGAGACTATTATGACGATCGATTCTTGTCATAT
259 ATGTATTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGACAATCGATTCTTGTCATAT
* *
1059803 TTAAGGGATGAACTTTGATTTTATGGGAAATAGGGCAAAGAAAAGATTTTCATGCAAAAAAAAAA
324 TTAAGGGATGAACTTTGATTTTATGGGAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAAA
* * * *
1059868 CATCAATATCGTTTATCCTAATGAGGAAAATGTCTTTGTAGTGCCTAATCACAAAATGGATGAAA
389 CATCAATATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAA
* *
1059933 ATC-TTTACGAGATTCCATGTTT
454 ATCATTT-CTAGAATCCATGTTT
* **
1059955 GTCTCATTTGAGGCATGAACTTAGAGTTCACAAAAATTGGTGGGAA-AAAGCCTTCGTTTT-GAA
1 GTCTCATTTGAGGCATGAACTTAGACTTTGCAAAAATTGGTGGGAAGAAAGCCTT--TTTTCGAA
* *** * * *
1060018 ACCAAATCATCCTTATCATGTATCCTAAAGAGAAGACTATGTTTATGCTGCCTAATCCAGAAAAG
64 ACCAAAGCATTAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAG
* * * * * *
1060083 AATGAGGATTACTATGATTATTCATGGTTTTCTTATTTAAGA-GACAAACTTTGATTTTATCAAA
129 AATGAGGATTAGTATGAGTCTTCATGGTTGTCTTATTTATGAGGA-AAACTTTGATTCTATCAAA
* * * * * *
1060147 AACGGT-GAAAGAAAAGCTTTTCTTGAGATAGCAAA-CTTTAATGCCATGCATCATAATGAAGGG
193 AATGGTGGAAAGAAAAGTTTTTCTTGCGATACCAAAGCTTTAATGTCATGCATCCTAATGAAGGG
* * * * *
1060210 AAAGTGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACCGTTATGACAATCGATCCTTGTCATA
258 AATGTATTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGACAATCGATTCTTGTCATA
* ** * * * * * *
1060275 TTTAAGGGATGAATTTTGATTTTAAAGAAAAAAAGACGAA-AAAAGA-TTCTCACGC-AAA-AAA
323 TTTAAGGGATGAACTTTGATTTTATGGGAAATAGGGCAAAGAAAAGATTTC-CATGCAAAAGAAA
* * ** * * **
1060336 ATCATCATTATTATTTATCCTAATGAGGAGAATATGTTTATTGTGCCCGATCACAAAATGAATGA
387 AACATCAATATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
* * *
1060401 ATATCATTTTTGGAATCCATGTTT
452 AAATCATTTCTAGAATCCATGTTT
* * *
1060425 GTCTCATTTGAAGCACGAACTTAGACTTTGCAAAAATTGGTGGGAAGAAAGCCTTTCTTCCGAAA
1 GTCTCATTTGAGGCATGAACTTAGACTTTGCAAAAATTGGTGGGAAGAAAGCCTTT-TTTCGAAA
1060490 CCAAAGCATTAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTA-AAAAG
65 CCAAAGCATTAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCC-AGAAAAG
* *
1060554 AATGGGGATTAGTTTGAGTCTTCATGGTTGTCTTATTTATGAGGAAAACTTTGATTCTATCAAAA
129 AATGAGGATTAGTATGAGTCTTCATGGTTGTCTTATTTATGAGGAAAACTTTGATTCTATCAAAA
* * * **
1060619 ATGGTGGAAATAAAAGTTTTTCTTGCGACACCAAAGCTTCAATGTCATTAATCCTAATGAAGGGA
194 ATGGTGGAAAGAAAAGTTTTTCTTGCGATACCAAAGCTTTAATGTCATGCATCCTAATGAAGGGA
1060684 ATGTATTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGACAATCGATTCTTGTCATAT
259 ATGTATTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGACAATCGATTCTTGTCATAT
* * *
1060749 TTAAGGGATGAACTTTGTTTTTATTGGAAATAGGGCAAAGAAAACATTTCCATGCAAAAGAAAAA
324 TTAAGGGATGAACTTTGATTTTATGGGAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAAA
* * *
1060814 CATCAATATCGCTTATTCTAATAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAA
389 CATCAATATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAA
*
1060879 ATC-TTTACTAGATTCCATGTTT
454 ATCATTT-CTAGAATCCATGTTT
* **
1060901 ATCTCATTTGAGGCATGAACTTAGACTTCACAAAAATTGGTGGGAA-AAAGCCTTTGTTTCGAAA
1 GTCTCATTTGAGGCATGAACTTAGACTTTGCAAAAATTGGTGGGAAGAAAGCCTTT-TTTCGAAA
** ** * * *
1060965 CCAAATTATCCATATCATGTATCCTAAAGAGAAGACTATGTTTATGCTGCCTAATCCAGAAAAGA
65 CCAAAGCATTAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGA
* * * * *
1061030 ATGAGGATTAGTATGATTATTCATGGTTGTCTTATATA-GTA-GACAAACTTTGATTTTATAAAA
130 ATGAGGATTAGTATGAGTCTTCATGGTTGTCTTATTTATG-AGGA-AAACTTTGATTCTATCAAA
* * * * * *
1061093 AACGGT-GAAAGAAAAGCTTTTCTTGGGATAGCAAA-CTTTAATGCCATGCATCATAATGAAGGG
193 AATGGTGGAAAGAAAAGTTTTTCTTGCGATACCAAAGCTTTAATGTCATGCATCCTAATGAAGGG
* * * * * *
1061156 AAAGTGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTAACGACAATCGATCCTTGTCATA
258 AATGTATTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGACAATCGATTCTTGTCATA
* **** * * * *
1061221 TTTAAGGGATGAATTTTGATTTTAAACAAAAAAAGGGCGAA-AAAAGATTTTCACGCAAAAGAAA
323 TTTAAGGGATGAACTTTGATTTT-ATGGGAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
* * * * * *
1061285 ATCATCATTATCATTTATCCTAATGAGGAGAATATGTTTATTGTGCCTGATCACAAAATGAATGA
387 AACATCAATATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
* * *
1061350 ATATCATTTTTGGAATCCATGTTT
452 AAATCATTTCTAGAATCCATGTTT
*
1061374 GTCTCATTTGAGGCATGAACTTAGACTTTGCAAAAATTGGTGGGAAGAAAGCCTTTCTTCTGAAA
1 GTCTCATTTGAGGCATGAACTTAGACTTTGCAAAAATTGGTGGGAAGAAAGCCTTTTTTC-GAAA
* ** *
1061439 CCAAAGCATTAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCTTGAATAGA
65 CCAAAGCATTAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGA
* * *
1061504 AT-AGGGATTAGTTTGAGTCTTCATGGTTGTCTTATTTATGAGGAAAACTTTAATTCTATC-AAC
130 ATGA-GGATTAGTATGAGTCTTCATGGTTGTCTTATTTATGAGGAAAACTTTGATTCTATCAAAA
* * *
1061567 ATGGTGGAAAAAAAAGTTTTTCTTGCGATAACAAAGCTTCAATGTCATGCATCCTAATGAAGGGA
194 ATGGTGGAAAGAAAAGTTTTTCTTGCGATACCAAAGCTTTAATGTCATGCATCCTAATGAAGGGA
*
1061632 ATGTATTCTTGGTTCCCAATTTTGAAAAGAATGGAGACTGTTATGACAATCGATTCTTGTCATAT
259 ATGTATTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGACAATCGATTCTTGTCATAT
*
1061697 TTAAGGGATGAACTTTGATTTTATGGGAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAAA
324 TTAAGGGATGAACTTTGATTTTATGGGAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAAA
* * * * *
1061762 CATCAATATCGTTTATTCTAATAAGGAGAATGTATTTATAGTGCCTCATCACAAAATGAATGACA
389 CATCAATATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAA
1061827 ATC
454 ATC
1061830 GATTCTTGTC
Statistics
Matches: 1592, Mismatches: 252, Indels: 63
0.83 0.13 0.03
Matches are distributed among these distances:
469 1 0.00
470 114 0.07
471 133 0.08
472 37 0.02
473 477 0.30
474 224 0.14
475 446 0.28
476 156 0.10
477 2 0.00
478 2 0.00
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (475 bp):
GTCTCATTTGAGGCATGAACTTAGACTTTGCAAAAATTGGTGGGAAGAAAGCCTTTTTTCGAAAC
CAAAGCATTAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAA
TGAGGATTAGTATGAGTCTTCATGGTTGTCTTATTTATGAGGAAAACTTTGATTCTATCAAAAAT
GGTGGAAAGAAAAGTTTTTCTTGCGATACCAAAGCTTTAATGTCATGCATCCTAATGAAGGGAAT
GTATTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGACAATCGATTCTTGTCATATTT
AAGGGATGAACTTTGATTTTATGGGAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAAACA
TCAATATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAAAT
CATTTCTAGAATCCATGTTT
Found at i:1061941 original size:147 final size:147
Alignment explanation
Indices: 1061674--1061976 Score: 527
Period size: 147 Copynumber: 2.1 Consensus size: 147
1061664 GGAGACTGTT
*
1061674 ATGACAATCGATTCTTGTCATATTTAAGGGATGAACTTTGATTTTATGGGAAATAAGGCAAAGAA
1 ATGACAATCGATTCTTGTCATATTTAAGGGATGAACTTTGACTTTATGGGAAATAAGGCAAAGAA
*
1061739 AAGATTTCCATGCAAAAGAAAAACATCAATATCGTTTATTCTAATAAGGAGAATGTATTTATAGT
66 AAGATTTCCATGCAAAAGAAAAACATCAATATCATTTATTCTAATAAGGAGAATGTATTTATAGT
*
1061804 GCCTC-ATCACAAAATGA
131 GCC-CAACCACAAAATGA
*
1061821 ATGACAATCGATTCTTGTCATATTTAAGGGATGAACTTTGACTTTATGGGAAATAGGGCAAAGAA
1 ATGACAATCGATTCTTGTCATATTTAAGGGATGAACTTTGACTTTATGGGAAATAAGGCAAAGAA
* *
1061886 AAGATTTCCGTGCAAAAGAAAAACATCAATATCATTTATTCTAATAAGGAGAATGTGTTTATAGT
66 AAGATTTCCATGCAAAAGAAAAACATCAATATCATTTATTCTAATAAGGAGAATGTATTTATAGT
1061951 GCCCAACCACAAAATGA
131 GCCCAACCACAAAATGA
*
1061968 ATGAAAATC
1 ATGACAATC
1061977 TTTACTAGAT
Statistics
Matches: 148, Mismatches: 7, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
146 1 0.01
147 147 0.99
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.29
Consensus pattern (147 bp):
ATGACAATCGATTCTTGTCATATTTAAGGGATGAACTTTGACTTTATGGGAAATAAGGCAAAGAA
AAGATTTCCATGCAAAAGAAAAACATCAATATCATTTATTCTAATAAGGAGAATGTATTTATAGT
GCCCAACCACAAAATGA
Found at i:1062585 original size:474 final size:476
Alignment explanation
Indices: 1061821--1063206 Score: 1600
Period size: 474 Copynumber: 2.9 Consensus size: 476
1061811 CACAAAATGA
* * * * *
1061821 ATGACAATCGATTCTTGTCATATTTAAGGGATGAACTTTGACTTTATGGGAAATAGGGCAAAGAA
1 ATGACAATCAATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAA
* * *
1061886 AAGATTTCCGTGCAAAAGAAAAACATCAATATCATTTATTC-TAATAAGGAGAATGTGTTTATAG
66 AAGATTTCCATGCAAAA-AAAATCATCAATATCATTTA-TCATAATGAGGAGAATGTGTTTATAG
* * * * * * *
1061950 TGCCCAACCACAAAATGAATGAAAATCTTTACTAGATTTCATGTTTGTCTCATTTAAGGCATGAA
129 TGCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAA
* *
1062015 CTTAGACTTCACAAATACTTGGTGGG--AAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGT
194 CTTAGACTTTACAAA-AATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGT
* * ** * * *
1062078 GTATCCTTATGAGAAGACTATGTTTACGGTGCCTAATCCCAAAAAGAATGAGGATTAGAATGATT
258 GTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGT
* * *
1062143 ATTCATGGTTGTCTTATATAAGAGACAAACTTTGATTTTACCAAAAACTGGTGGAATGAAAAGCT
323 ATTCATGGTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACTGGTGGAATGAAAAGCT
* * * * * * *
1062208 TTTCTTGTGATAGCAAA-CTTCAATGCCATGCATCATAATGAAGGGAAAGTGTTCTTGGTTCCCA
388 TTTCTTGTGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCA
* *
1062272 CTCTTGAAAAGAATGGAGACTATT
453 ATCTTGAAAAGAATGGAGACTGTT
* * * *
1062296 ACGATAATCAATCCTTGTCATATTTAAGGGATGAATTTTGATTTTAAAGAGAAA-AGGGCAAA-A
1 ATGACAATCAATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGA-AAATAGGGCAAAGA
* * * * * * *
1062359 AAAGATTTTCACGCAAAAAAAATCATCATTATCATTTATCCTAATGAGGAGGATATGTTTATTGT
65 AAAGATTTCCATGCAAAAAAAATCATCAATATCATTTATCATAATGAGGAGAATGTGTTTATAGT
* * * * * * *
1062424 GCCTGATCACAAAATGAATGAATATCAATT-CTGGAATCCAAGTTTGTCTCATTTAAGGCACGAA
130 GCCTAATCACAAAATGAATGAAGATC-CTTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAA
* * * * * *
1062488 CTTAGACTTTGCAAAAATTGGAGGGAAGAAAGCCTTTCTTCCGAAACAAAAGCATTAATATCGTG
194 CTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTG
* * * * *
1062553 TATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAATAATAGGGATTAGTTTGAGTC
259 TATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTA
*
1062618 TTCATGGTTGTCTTATTTAAGAGGA-AAACTTTGATTCTATCAAAAA-TGGTGGAAAT-AAAAGT
324 TTCATGGTTGTCTTATTTAAGA-GACAAACTTTGATTCTATCAAAAACTGGTGG-AATGAAAAGC
* *
1062680 TTTTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCCTGGTTCCC
387 TTTTCTTGTGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCC
* ** *
1062745 AATCTTGAAAAGAGTAAAGACTATT
452 AATCTTGAAAAGAATGGAGACTGTT
* *
1062770 ATGACAAAT-GACTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGA
1 ATGAC-AATCAATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGA
* * * * * * * * * *
1062834 TAATATTACCACGTAAGAGAAAA-CGTAAATAACATTTATCATAACGAGGAGAATGTGTTT-TCA
65 AAAGATTTCCATGCAA-AAAAAATCATCAATATCATTTATCATAATGAGGAGAATGTGTTTAT-A
* * * * * * * *
1062897 GTGCCTAATCACAAAATGAATGACGATCCTTGCTAGAATTCATGTTTATTTGATTTGCGGAATGA
128 GTGCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCATGA
* * *
1062962 ACTTAGACTTTACAAAAATTGGTGGG-AAAAAGCCTTCCTTGCAAAACCAAAGTATCAATATCGT
193 ACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGT
* * *
1063026 GCATACTAATGAGAAGACTATGTTTACGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGT
258 GTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGT
* *
1063091 CTTCATGGTTGTCTTATTTAAGAGTA-AAACTTTGATTCTATC-AAAACTGGTGGAAAT-AAAGG
323 ATTCATGGTTGTCTTATTTAAGAG-ACAAACTTTGATTCTATCAAAAACTGGTGG-AATGAAAAG
* * * * *
1063153 TTTTTCATGCGAAACCAAAGCTTCAATGTCATGCATCCTAATGAAGGGAATGTA
386 CTTTTCTTGTGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTA
1063207 ATCGATTCTT
Statistics
Matches: 777, Mismatches: 118, Indels: 33
0.84 0.13 0.04
Matches are distributed among these distances:
472 10 0.01
473 136 0.18
474 456 0.59
475 167 0.21
476 8 0.01
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (476 bp):
ATGACAATCAATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAA
AAGATTTCCATGCAAAAAAAATCATCAATATCATTTATCATAATGAGGAGAATGTGTTTATAGTG
CCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACT
TAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTA
TCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATT
CATGGTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACTGGTGGAATGAAAAGCTTTT
CTTGTGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATC
TTGAAAAGAATGGAGACTGTT
Found at i:1064255 original size:477 final size:473
Alignment explanation
Indices: 1063206--1065064 Score: 2090
Period size: 477 Copynumber: 3.9 Consensus size: 473
1063196 AAGGGAATGT
* * * ** *
1063206 AATCGATTCTTGTCATATTTAAGGAATGAATTTTGATTTTAAGAAAAATAGGGTAATTAAAAGAT
1 AATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGATAAGAT
* * * * * *
1063271 TTTCATGCAAAAGAAAATCATCATTATCATTTATCCTAATGAGGAGAATGTGTTTATAGTACCTA
66 TTCCATGCAAAAGAAAATCATAAATATCATTTATCATAACGAGGAGAATGTGTTTATAGTGCCTA
* * * * * ** *
1063336 ATCTCAAAAGGAATGAAGATCCTTGTTATAATTCATGTTTGTCTCTTTTGAGGCAGGAACGTAGA
131 ATCACAAAATGAATGAAGATCCTTGCTAGAATTCATGTTTGTCTCATTTGAGGCATAAACTTAGA
* * * * *
1063401 CTTTATAAAAATTTGTGGG-AAAAAGCCTTTCTTTCCAAACCAAAGCATCAGTATCATGTATCCT
196 CTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCT
* * * * * * * * * * *
1063465 TATTAGAAGATTGTGTTTATGGTGCCTAATCTTAAAAAGAAAGGCGATTAGAATGATTGTTCATG
261 AATGAGAAGACTATGTTTATGGTGCCTAATC-TGAGAAGAATGGGGATTAGTATGAGTCTTCATG
* * * * * * *
1063530 TTTGTCTTATTTATGAGACAAACTTTGATTCTATCAAAAACAGAGGAAAGAGAAGCTTGTCTTAT
325 GTTATCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTT-TCTTGT
* ** * * * * *
1063595 GACCCCAAAGCATCTGTGTCATGTATCTTAATGAAAGGAATGTGTTTTTGGTTTCCAATCTTGCA
389 GACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTAGTTCCCAATCTTG-A
* ** *
1063660 ATGAATGGAAATTGTTACAAG
453 AAGAATGGAAATTGTTATGAC
* * * * * * * *
1063681 AATC-AGTGCTTGCCTTATTTCAA-AGATGAATTTAGATTTTATGGAAAACAGGCCAAAGA-ACA
1 AATCGA-TTCTTGTCATATTT-AAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGATA-A
** * * * **
1063743 GATTTCCAACCAAAATAAAATCATCAGTATCATTTATCATAATTAGGAGAATGTGTTTATAGTGC
63 GATTTCCATGCAAAAGAAAATCATAAATATCATTTATCATAACGAGGAGAATGTGTTTATAGTGC
* ** *
1063808 CTAATCACAAAATGAATGAAGATCCTTACTAGAACCCATGTTGGTCTCATTTGAGGCATAAACTT
128 CTAATCACAAAATGAATGAAGATCCTTGCTAGAATTCATGTTTGTCTCATTTGAGGCATAAACTT
* * ** * *
1063873 AGACTTTGCAAAAATTGGGGGGAAAAAAGATTTTCTCGCAAAACCAAAGCATTAATATCATGTAT
193 AGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTAT
* * * *
1063938 CCTAATGAGAAGGCTATGTTCATGGTGCCTGATGCT-A-AA-AATAGCAGGGATTAGTACGA-TG
258 CCTAATGAGAAGACTATGTTTATGGTGCCTAAT-CTGAGAAGAAT-G--GGGATTAGTATGAGT-
* * * * * *
1063999 ATTCATGTTTATGTTATTTGAGAGACAAACTTTGATTCTACCAAAAAACGGTGGAAAGAAAACCA
318 CTTCATGGTTATCTTATTTAAGAGACAAACTTTGATTCTATC-AAAAACGGTGGAAAGAAAAGC-
* * *
1064064 TTTCTTGTGATACCAAAGCATCAATGCCATTTATCCTAATGAAGGGAATGTGTTCTTAGTTCCCA
381 TTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTAGTTCCCA
* *
1064129 ATCCTGAAGAGAATGGAGATTGTTATGAC
446 ATCTTGAA-AGAATGGAAATTGTTATGAC
* *
1064158 AATCGATTCTTATCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGATAATAT
1 AATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGATAAGAT
* *
1064223 TTTCATGCAAAAGAAAATCATAAATATCATTTATCGTAACGAGGAGAATGTGTTTACTA-TGCCT
66 TTCCATGCAAAAGAAAATCATAAATATCATTTATCATAACGAGGAGAATGTGTTTA-TAGTGCCT
* * * * *
1064287 AATCACAAAATGAATGAAAATCCTTGCTAGAATTCATATTTGTCTCATTTAAGGCATGATCTTAG
130 AATCACAAAATGAATGAAGATCCTTGCTAGAATTCATGTTTGTCTCATTTGAGGCATAAACTTAG
* * *
1064352 ACTTTACGAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTCTCC
195 ACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCC
* *
1064417 TAAAGAGAAGACTATGTTTATGGTGCCTAATCCTGAGAAGAATGGGGATTAGTATGAGTCTTCAC
260 TAATGAGAAGACTATGTTTATGGTGCCTAAT-CTGAGAAGAATGGGGATTAGTATGAGTCTTCAT
* * *
1064482 GGTTATCTTATTTAAGAGGA-AAACTTTGATTCTATCAAAAATGGTGGAAATAAAAGTTTTTCTT
324 GGTTATCTTATTTAAGA-GACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAG-CTTTCTT
* * * *
1064546 GCGACACCAAAGCATCAATGTCATGCATCCTCATGAAGGGAATGTATTCTTAGTTCCCAATCTTG
387 GTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTAGTTCCCAATCTTG
* * *
1064611 AAAAGAATGGATACTATTATGAC
452 -AAAGAATGGAAATTGTTATGAC
* *
1064634 AAACGATTCTTGTCATATTTAAGGGATTAATTTTGATTTTAAGGAAAATAGGGCAAAGATAATG-
1 AATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGATAA-GA
* * * * * *
1064698 TTACCACGCAAGAGAAAA-CGTAAATAACATTTATCATAACGAGGAGAATGTGTTT-TCAGTGTC
65 TTTCCATGCAAAAGAAAATCATAAATATCATTTATCATAACGAGGAGAATGTGTTTAT-AGTGCC
* * * *
1064761 TAATCACAAAATGAATGAAGATCCATGCTAGAATTCATGTTTATCTGATTTGAGGAATAAACTTA
129 TAATCACAAAATGAATGAAGATCCTTGCTAGAATTCATGTTTGTCTCATTTGAGGCATAAACTTA
* * *
1064826 -ACTTTACAAAAATTGGTGGGAAAAAAGCCTTCCTTGCAAAACCAAAGCATTAATATGATGTATC
194 GACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATC
*
1064890 CTAATGAGAAGACTATGTTTATTGTGCCTAATCTTGAGAAGAATGGGGATTAGTATGAGTCTTCA
259 CTAATGAGAAGACTATGTTTATGGTGCCTAATC-TGAGAAGAATGGGGATTAGTATGAGTCTTCA
* ** * * *
1064955 TGGTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAATTGGTGGAAATAAAGGTTTTTCTT
323 TGGTTATCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAG-CTTTCTT
* * * * * *
1065020 GCGACACCAAAGCTTCAATGTTAAGCATCTTAATGAAGGGAATGT
387 GTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGT
1065065 AATCGATCCT
Statistics
Matches: 1171, Mismatches: 185, Indels: 57
0.83 0.13 0.04
Matches are distributed among these distances:
473 6 0.01
474 223 0.19
475 265 0.23
476 284 0.24
477 377 0.32
478 10 0.01
479 3 0.00
480 3 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (473 bp):
AATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGATAAGAT
TTCCATGCAAAAGAAAATCATAAATATCATTTATCATAACGAGGAGAATGTGTTTATAGTGCCTA
ATCACAAAATGAATGAAGATCCTTGCTAGAATTCATGTTTGTCTCATTTGAGGCATAAACTTAGA
CTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCT
AATGAGAAGACTATGTTTATGGTGCCTAATCTGAGAAGAATGGGGATTAGTATGAGTCTTCATGG
TTATCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTCTTGTGA
CACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTAGTTCCCAATCTTGAAAG
AATGGAAATTGTTATGAC
Found at i:1066625 original size:475 final size:474
Alignment explanation
Indices: 1065065--1066922 Score: 2068
Period size: 475 Copynumber: 3.9 Consensus size: 474
1065055 AAGGGAATGT
* * * ** *
1065065 AATCGATCCTTGTCATATTTAAGGAATGAATTTTGATTTTAA-GAAAACTAGGGTAATTAAAAGA
1 AATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAA-TAGGGCAAAGATAAGA
* * * * * * * *
1065129 TTTTCATGCAAAAGAAAATTATCATTATCATTTATCCTAATGGGGAGAATGTGTTTATAGTACCT
65 TTTCCACGCAAAAGAAAA-TATAAATAACATTTATCATAATGAGGAGAATGTGTTTATAGTGCCT
* * * * * * *
1065194 AATCTCAAAAGGAATGAAGATCCTTGCGATAATTTATGTTCGTCTCGTTTGAGGCATGAACTTAG
129 AATCACAAAATGAATGAAGATCCTTGCTAGAATTCATGTTTGTCTCATTTGAGGCATGAACTTAG
* ** * * * * *
1065259 ACTTTATAAAAATTTATGGGAAAAAAGCCTTTCTTGCCAAACCAAAGCTTCAGTATCATGTATCC
194 ACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTACAAAACCAAAGCATCAATATCGTGTATCC
* * * * * * * *
1065324 TTATCAGAAGATTGTGTTTATGGTGCCTAATCTTAAAAAGAATGGCGATTAGAATGACCGTTCAT
259 TAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGATC-TTCAT
* * * * * * * *
1065389 GTTTGTCTTATTTAAGAGAAAAAATTTAATTCTATCAAAAACAGAGGAAAGAGAAGCTTTTCTTA
323 GATTATCTTATTTAAGAGGAAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTA
* ** * * * * * * * *
1065454 TGAC-CCTAAAGCATCTGTGTGATGTATCTTAATGAAAGGAATGTGTTTTTGGTTTCCAATCTTG
388 CGACACC-AAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCTTAGTTCCCAATCTTG
* * * ** *
1065518 TAATGAATGGAAACTGTTACAAG
452 AAAAGAATGGAGACTGTTATGAC
* * * * * *
1065541 AATCAATGCTTGCCTTATTTCAA-AGATGAATTTTGATTTTATGGAAAATAGGGCAAAGA-ACAG
1 AATCGATTCTTGTCATATTT-AAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGATA-AG
* * * * *
1065604 ATTTCCAAC-CAAAATAAAATCATCAGTATCATTTATCATAATTAGGAGAATGTGTTTATAGTGC
64 ATTTCC-ACGCAAAAGAAAAT-ATAAATAACATTTATCATAATGAGGAGAATGTGTTTATAGTGC
* * ** * *
1065668 CTAATCCCAAAATGAATGAAGATCCTTACTAGAACCCATGTTGGTCTCATTTGAGGCATAAACTT
127 CTAATCACAAAATGAATGAAGATCCTTGCTAGAATTCATGTTTGTCTCATTTGAGGCATGAACTT
* * * * * *
1065733 AGACTTTGCAAAAATT-GTGGGAAAAAAACTTTTCTCACAAAACCAAAGCATCAATATTGCGTAT
192 AGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTACAAAACCAAAGCATCAATATCGTGTAT
* * * * * * *
1065797 CCTGATGAGAAGACTATGTTTATGGTGCCTAATGCTAAAAATAGTAGGGATTAGTACGATGATTC
257 CCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAT-CTTC
* * * * *
1065862 ATGCTTATGTTATTTGAAGA--CAAACTTTGATTCTATCAAAAAACGGTGGAAAGAAAACCATTT
321 ATGATTATCTTATTT-AAGAGGAAAACTTTGATTCTATC-AAAAACGGTGGAAAGAAAAGCTTTT
** * * *
1065925 CTTGTGATACCAAAGCATCAAT-TCCAT-TATCCTAATGAAGGGAATGTGTTCTTAGTTCCCAAT
384 CTTACGACACCAAAGCATCAATGT-CATGCATCCTAATGAAGGGAATGTATTCTTAGTTCCCAAT
* * *
1065988 CCTAAAAAGAATGGAGATTGTTATGAC
448 CTTGAAAAGAATGGAGACTGTTATGAC
* * * * *
1066015 AATCGATTGTTATCAAATTTAAAGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGATAATAT
1 AATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGATAAGAT
* * * *
1066080 TTTCATGCAAAAGAAAATCATAAATAACATTTATCGTAATGAGGAGAATTTGTTTATTA-TGCCT
66 TTCCACGCAAAAGAAAAT-ATAAATAACATTTATCATAATGAGGAGAATGTGTTTA-TAGTGCCT
* * *
1066144 AATCACAAAATGAATGAAAATCCTTGCTAGAATTCATGTTTGTCTCATTTAAGGCATGATCTTAG
129 AATCACAAAATGAATGAAGATCCTTGCTAGAATTCATGTTTGTCTCATTTGAGGCATGAACTTAG
* * *
1066209 ACTTTACAAAAATTGGTGGGAAAAAGGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTCTCC
194 ACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTACAAAACCAAAGCATCAATATCGTGTATCC
* * *
1066274 TAATGAGAAGACTATGTTTATGGTGCTTAATCCTGAGAAGAATGGGGATTAGTATGAGTCTTCAT
259 TAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGA-TCTTCAT
* * * * *
1066339 AATTATCTTATTTAAGAGGAAAACTTTGATTCTATCAAAAATGGGGGAAATAAAAGTTTTTCTTA
323 GATTATCTTATTTAAGAGGAAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTA
* *
1066404 CAACACCAAAGCATCAATGTCATGCATCCCAATGAAGGGAATGTATTCTTAGTTCCCAATCTTGA
388 CGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCTTAGTTCCCAATCTTGA
1066469 AAAGAATGGAGACTGTTATGAC
453 AAAGAATGGAGACTGTTATGAC
* *
1066491 AAACGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGATAATAT
1 AATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGATAAGAT
* * * * *
1066556 TACCACGCAAGAGAAAA-AGTAAATAACATTTATCATAATGAGGAGAATCTATTTTTAGTGCCTA
66 TTCCACGCAAAAGAAAATA-TAAATAACATTTATCATAATGAGGAGAATGTGTTTATAGTGCCTA
* * * * *
1066620 ATCACAAAATGAATGAAGATCCTTGCTAGAATTAATGTTTATCTGATTTGTGGAATGAACTTAGA
130 ATCACAAAATGAATGAAGATCCTTGCTAGAATTCATGTTTGTCTCATTTGAGGCATGAACTTAGA
* *
1066685 CTTTACAAAAATTGGTGGGAAAAAAGCCTTCCTTACGAAACCAAAGCATCAATATCGTGTATCCT
195 CTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTACAAAACCAAAGCATCAATATCGTGTATCCT
* * * *
1066750 AATGAGAATACTATGTTTATGGTGCCTAATCCTGAGAAGAATGGGGATTAGTATGAGTCTTAATG
260 AATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGA-TCTTCATG
* * * * * * *
1066815 GTTGTCTTATTTAAGAGGAAAACTTTGATTCTATCAAACA-GGTGGAAATAAAGGTTTTTCTTGC
324 ATTATCTTATTTAAGAGGAAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTAC
*
1066879 GACACCAAAGCTTCAATGTCATGCATCCTAATGAAGGGAATGTA
389 GACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTA
1066923 ATCGATCCTT
Statistics
Matches: 1168, Mismatches: 192, Indels: 46
0.83 0.14 0.03
Matches are distributed among these distances:
473 3 0.00
474 302 0.26
475 539 0.46
476 316 0.27
477 8 0.01
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (474 bp):
AATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGATAAGAT
TTCCACGCAAAAGAAAATATAAATAACATTTATCATAATGAGGAGAATGTGTTTATAGTGCCTAA
TCACAAAATGAATGAAGATCCTTGCTAGAATTCATGTTTGTCTCATTTGAGGCATGAACTTAGAC
TTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTACAAAACCAAAGCATCAATATCGTGTATCCTA
ATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGATCTTCATGAT
TATCTTATTTAAGAGGAAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGA
CACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCTTAGTTCCCAATCTTGAAAA
GAATGGAGACTGTTATGAC
Found at i:1067903 original size:475 final size:476
Alignment explanation
Indices: 1066922--1072884 Score: 6625
Period size: 475 Copynumber: 12.6 Consensus size: 476
1066912 AAGGGAATGT
* * * * ** **
1066922 AATCGATCCTTGTCATATTTATGGAATGAATTTTGATTTTAAGAAAAATAGGATAATTAAAAGAT
1 AATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
* * * * *
1066987 TTTCATGCAAAAGAAAATCATCATTATCATTTATCCTAATGAGGAGAATATGTTTATAGTACCTA
66 TTCCATGCAAAAGAAAATCATCAATATCATTTATCATAATGAGGAGAATGTGTTTATAGTGCCTA
* * * * * * *
1067052 ATCTCAAAAAGAATAAAGATCCTTGCTATAATTCATGTTTGTCTCATTTGAGGCATGAACTTAGA
131 ATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGA
*** ** *
1067117 CTTTATTAAAATTTATGGGAAAAAAGCCTTTCTTGCCAAACCAAAGCATCAATATCGTGTATCCT
196 CTTTGCAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCT
* * * * * * * * *
1067182 TATCAGAAGATTGTGTTTCTGGTGCCTAATCTTAAAAAGAATGGCGATTAGAATGACTG-TTAAT
261 AATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGA--GATTCAT
* * * *
1067246 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAT--AGGAAAGAGAAGGTTTTCT
324 GTTTGTCTTATTTGAGAGACAAACTTTGATTCTATCAAAAA-ATGGTGGAAAGAAAAGCTTTTCT
* * ** * * * * * * *
1067309 TATGACCCCAAAGCATCTGTGTCGTGTAT-CTCAATGAAAGGAATGTGTTTTTGGTTTCCAATCT
388 TGTGACACCAAAGCATCAATGCCATGCATCCT-AATGAAGGGAATGTATTCTTGGTTCCCAATCT
* * * ** *
1067373 TGTAATGAATGGAAACTGTTACAAG
452 TGAAAAGAATGGAGACTGTTATGAC
* * * * * * **
1067398 ATTC-AGTGCTTGCCTTATTTCAA-AGATGAATTTTGATTTTATGGAAAATAGGG-AAAGAGCAG
1 AATCGA-TTCTTGTCATATTT-AAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAG
** * * *
1067460 ATTTCCAACCAAAATAAAATCATCAGTATCATTTATCATAACT-AGAAGAATGTGTTTATAGTGC
64 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCATAA-TGAGGAGAATGTGTTTATAGTGC
* * * * * *
1067524 CTAATCACAAAATGAATGAAGATCCTTACTAGAACCCATGTTGGTCTCATTTGTGGCATAAACAT
128 CTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTT
* * * * * *
1067589 AGACTTTGCAAAAATTGGGGGGAAAAAAGCTTTTCTCGCAAAACCAAAGCATGAGTATCGTGTAT
193 AGACTTTGCAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTAT
* * * * *
1067654 CCTAATGAGAAGACTATGTTCATGGTGCCTAATGCTAAAAATAGTGGGGATTAGTACGATGATTC
258 CCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGA-GATTC
* * * *
1067719 ATGTTTATGTTATTTGAGAGACAAACTTTGATTCTATCAAAAAATGGTGGAAAGAAAACCATTTC
322 ATGTTTGTCTTATTTGAGAGACAAACTTTGATTCTATCAAAAAATGGTGGAAAGAAAAGCTTTTC
* * * * * *
1067784 TTGTGATACCAAAGCATCAATGCCAT-TATCCTAATGAAGGGCATGTGTTCTTAGTTCCCAATCC
387 TTGTGACACCAAAGCATCAATGCCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATCT
* *
1067848 TAAAAAGAATGGAGATTGTTATGAC
452 TGAAAAGAATGGAGACTGTTATGAC
* * *
1067873 AATCGATTCTTATCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGATAATAT
1 AATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
* * * ** *
1067938 TTTCATGCAAAAGAAAATCATAAATATCATTTATCGTAACAAGGAGAATGTGTTTATTGTGCCTA
66 TTCCATGCAAAAGAAAATCATCAATATCATTTATCATAATGAGGAGAATGTGTTTATAGTGCCTA
* * * * * *
1068003 ATCACAAAATGAATGAAAATCCTTGCTAGAATTCATGTTTGTCTCA-TTAAGGCATGATCTTAGA
131 ATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGA
* * * * *
1068067 CTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGTGAAACCAAAGTATCAATATCGTGTCTTCT
196 CTTTGCAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCT
* * * *
1068132 AATGAGAAAACTATGTTTATGGTGCCTAATCCTGAGAAGAATGGGGATTAGTATGAGTCTTCATG
261 AATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAG-ATTCATG
* * * *
1068197 GTTGTCTTATTTAAGAGGA-AAACTTTGATTCTATC-AAAAATGGTGGAAATAAAAGTTTTTCTT
325 TTTGTCTTATTTGAGA-GACAAACTTTGATTCTATCAAAAAATGGTGGAAAGAAAAGCTTTTCTT
* *
1068260 GCGACACCAAAGCATCAAT-CTCATGCATCCTAATGAAGGGAATGTATTCTTAGTTCCCAATCTT
389 GTGACACCAAAGCATCAATGC-CATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATCTT
*
1068324 GAAAATAATGGAGACTGTTATGAC
453 GAAAAGAATGGAGACTGTTATGAC
* * * **
1068348 AAACGATTCTTGTCATATTTAAGGGATGAATTTTAATTTTAAGGAAAATAGGGTAAA-AAATTAT
1 AATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
* * * *
1068412 TTTCATGCAAAAGAAAATCATAAATATCATTTATCATAGTGAGGAGAATGTGTTTATAGTGGCTA
66 TTCCATGCAAAAGAAAATCATCAATATCATTTATCATAATGAGGAGAATGTGTTTATAGTGCCTA
* * *
1068477 ATCAGAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTTTCATTTGAGGCACGAACTTAGA
131 ATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGA
* * * *
1068542 CTTTAC-AAAATTGGTGGGAAAAAAGCCTTGCTTGCAAAACCAAATCATCAATATCGTGTATCCT
196 CTTTGCAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCT
* * *
1068606 AATGAGAAGACTATGTTTATGGTGCCTAATGCT-AAAAGTAATGGGGATTAGTTTGACGATTCGT
261 AATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAG-AATGGGGATTAGTATGA-GATTCAT
* * * * * * *
1068670 GTTTG-CGTTATTTGAGAGACAAACTTTGGTTCGATCCAAAAACGATGGAAAGAAAATCATTTCT
324 GTTTGTC-TTATTTGAGAGACAAACTTTGATTCTATCAAAAAATGGTGGAAAGAAAAGCTTTTCT
* * *
1068734 TGTGACACCAAAGCATCAAAGGCATGTATCCTAATGAAGGGAATGT-TTCTTGGTTCCCAATCTT
388 TGTGACACCAAAGCATCAATGCCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATCTT
** * *** *
1068798 GAAAAGGGTGGAGACTATTGCAAG
453 GAAAAGAATGGAGACTGTTATGAC
* * * * * *
1068822 AATCAATGCTTGTCATATTTGAGGGTTGAATTTT-ATTTTAAGAAAAATAGAGCAAAGAAAAGAT
1 AATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
** * * * * * * *
1068886 TTCCATGCAAAA-AAAATCATGTACATCTTTTATCCTAATGAGGAGAATCTGTTTATTGTTCCTG
66 TTCCATGCAAAAGAAAATCATCAATATCATTTATCATAATGAGGAGAATGTGTTTATAGTGCCTA
* * * * *
1068950 ATCAGAAAATGAATGAAGATCATTTCTGGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGA
131 ATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGA
* * * * *
1069015 CTTTGCAAAAATTGGTAGGAAGAAAGCCTTTCTTGCGAAACCAATGCATTAATATCATGTATCCT
196 CTTTGCAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCT
* * * ** *
1069080 TATGAGAAGACTATGTTTATGGTGCGTAATCCTGAAAAGAATGGGGATTAGTGCGAGTTTTCATG
261 AATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAG-ATTCATG
* * * * *
1069145 GTTGTCTTATTT-ATGAG-GAAACTTTGATTCTAT-TAAAAATGGTGGAAATAAAAGTTTTTCTT
325 TTTGTCTTATTTGA-GAGACAAACTTTGATTCTATCAAAAAATGGTGGAAAGAAAAGCTTTTCTT
* * * * *
1069207 GCGACACC-AAGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCCTAGTTCCCAATGTTG
389 GTGACACCAAAGCATCAATGCCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATCTTG
1069271 AAAAGAATGGAGACTGTTATGAC
454 AAAAGAATGGAGACTGTTATGAC
* * * * * *
1069294 AAAT-GATTCATGTCATATTTAAAGGATGAATTTTAATTTTAAGGAAAATAGGGTAAAGGAAACA
1 -AATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGA
* **
1069358 TTTCCATGC------AAA-CATCAATATCACTTATCATAATGAGGAGAATGTGTTTATAAAGCCT
65 TTTCCATGCAAAAGAAAATCATCAATATCATTTATCATAATGAGGAGAATGTGTTTATAGTGCCT
* *
1069416 AATCTCAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGATGCATGAACTTAG
130 AATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAG
* *
1069481 ACTTTGTAAAAATTGGTGGGAAAAAAG-CTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCC
195 ACTTTGCAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCC
* * * * * * *
1069545 CAATGAGAGAAACTATGTTTGTGGTGCCTAATGCTAAAAATATTGGGGATTAGTATGACGATTCT
260 TAATGAGA-AGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGA-GATTCA
* * * * * * * *
1069610 TGTATATGTTATTTGAGAGACAAACTTTGATTCTATCAGAAAACGATGGAAAGAAAACCATTTCT
323 TGTTTGTCTTATTTGAGAGACAAACTTTGATTCTATCAAAAAATGGTGGAAAGAAAAGCTTTTCT
* * * *
1069675 TGTCACACCAAAGCATTAATGCCATGTATCCTAACGAAGGGAATGT-TTCTTGGTTCCCAATCTT
388 TGTGACACCAAAGCATCAATGCCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATCTT
** * * * *
1069739 GAAAAGGGTGGAGACTATTGTAAG
453 GAAAAGAATGGAGACTGTTATGAC
* * * * * * *
1069763 AATCAATGCTTGTCATATTTGAGGGTTGAATTTTTATTTTAAGGTAAATAGAGCAAAGAAAAGAT
1 AATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
* * * * * ** * * ** *
1069828 TTCAATGCAAAA-ATAATCATCAACATCTTTTATCCTAAAAACGAGAGTGTGTTTATTTTGCCTG
66 TTCCATGCAAAAGAAAATCATCAATATCATTTATCATAATGAGGAGAATGTGTTTATAGTGCCTA
* * ** * *
1069892 ATCAGAAAATGAATGAAGATCATTTCGGGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGA
131 ATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGA
* * * *
1069957 CTTTGCAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATTAATATCATGTATCCT
196 CTTTGCAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCT
* * * * ** *
1070022 TATGAGAATACTATGTTTATGGTGCGTAATCCTGAAAAGAATGGGGATTAGTGCGAGTTTTCATG
261 AATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAG-ATTCATG
* * * * *
1070087 GTTGTCTTATTT-ATGAG-GAAACTTTGATTCTAT-TAGAAATGGTGGAAATAAAAG-TTTTGCT
325 TTTGTCTTATTTGA-GAGACAAACTTTGATTCTATCAAAAAATGGTGGAAAGAAAAGCTTTT-CT
* * * *
1070148 TGCGACACC-AAGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCCTGGTTCCCAATGTT
388 TGTGACACCAAAGCATCAATGCCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATCTT
1070212 GAAAAGAATGGAGACTGTTATGAC
453 GAAAAGAATGGAGACTGTTATGAC
* * * * * *
1070236 AAAT-GATTCATGTCATATTTAAAGGATGAATTTTAATTTTAAGGAAAATAGGGTAAAGGAAACA
1 -AATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGA
* **
1070300 TTTCCATGC------AAA-CGTCAATATCATTTATCATAATGAGGAGAATGTGTTTATAAAGCCT
65 TTTCCATGCAAAAGAAAATCATCAATATCATTTATCATAATGAGGAGAATGTGTTTATAGTGCCT
* **
1070358 AATCTCAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGATACATGAACTTAG
130 AATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAG
*
1070423 ACTTTGCAAAAATTGGTGGGAAAAAAG-CTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCC
195 ACTTTGCAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCC
* * * * *
1070487 CAATGAGAAAAACTATGTTTATGGTGCCTAATGCTAAAAATATTGGGGATTAGTATGACGATTC-
260 TAATGAG-AAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGA-GATTCA
* * * * * *
1070551 TGGTATGTGTTATTTGAGAGACAAACTTTGATTCTATCAGAAAATGATGGAAAGAAAACCATTTC
323 T-GTTTGTCTTATTTGAGAGACAAACTTTGATTCTATCAAAAAATGGTGGAAAGAAAAGCTTTTC
* *
1070616 TTGTCACACCAAAGCATCAATGCCATGTATCCTAATGAAGGGAATGT-TTCTTGGTTCCCAATCT
387 TTGTGACACCAAAGCATCAATGCCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATCT
* * * * *
1070680 TGAAAA-AGGTGGAGACTATTGTAAG
452 TGAAAAGA-ATGGAGACTGTTATGAC
* * * * * * **
1070705 AATCAATGCTTGTCATATTTGAGGGTTGAATTTTTATTTTAAGGTAAATAGACCAAAGAAAAGAT
1 AATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
* * * * * ** * *
1070770 TTTCATGCAAAA-ATAATCATCAACATCTTTTATCCTAAAAAGGAGAATGTGTTTATTGTGCCTG
66 TTCCATGCAAAAGAAAATCATCAATATCATTTATCATAATGAGGAGAATGTGTTTATAGTGCCTA
* ** * *
1070834 ATCACAAAATGAATGAAGATCATTTCGGGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGA
131 ATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGA
* * *
1070899 CTTTGCAAAAATTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATTAATATCGTGTATCCT
196 CTTTGCAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCT
* * * *
1070964 TATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGCATGAGTCTTCATG
261 AATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAG-ATTCATG
* * *
1071029 GTTGTCTTATTT-ATGAGGA-AAACTTTGATTCTAT-AAAAAATGGTGGAAATAAAAGTTTTTCT
325 TTTGTCTTATTTGA-GA-GACAAACTTTGATTCTATCAAAAAATGGTGGAAAGAAAAGCTTTTCT
* * * * *
1071091 TGTGACACCAAAGCTTCAATGTCATGCATCCTAATGAAGAGAATGCATTCTTGGTTCCCAAGCTT
388 TGTGACACCAAAGCATCAATGCCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATCTT
*
1071156 GAAAGGAATGGAGACTGTTATGAC
453 GAAAAGAATGGAGACTGTTATGAC
* * * * *
1071180 AATCGATTCTTGTCCTATTTAAGGGATGAACTTTGTTTTTATGGGAAATAGGGCAAAGAAAAGAT
1 AATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
*
1071245 TTCCATGCAAAAGAAAAAT-ATCAATATCGTTTATCCA-AATGAGGAGAATGTGTTTATAGTGCC
66 TTCCATGCAAAAG-AAAATCATCAATATCATTTAT-CATAATGAGGAGAATGTGTTTATAGTGCC
* * * * *
1071308 TAAGCACAAAATGAATAAACAT-ATTTACTAGATTCCACGTTTGTCTCATTTGAGGCATGAACTT
129 TAATCACAAAATGAATGAAGATCA-TTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTT
** * * * * *
1071372 AGACTTCACAAAAATTGGTGGG-AAAAAGCTTTTCTTTCGAAACCAAATCATCCATATCATGTAT
193 AGACTTTGCAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTAT
* * ** *
1071436 CCTAA-AAGGAAGACTATGTTTATGGTGCCTAATCCAAAAAAGAATAAGGATTAGTATGATTATT
258 CCTAATGA-GAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGA-GATT
* * * * *
1071500 CATGATTGTCTTATATAAGAGACAAACTTTGATTTTTTCAAAAACA--GTGGAAAGAAAAGCTTT
321 CATGTTTGTCTTATTTGAGAGACAAACTTTGATTCTATCAAAAA-ATGGTGGAAAGAAAAGCTTT
* * * * * * *
1071563 TCTTGCGACAAC-AACCCTCAATGCCATGCATCCTAATGAAGGGAAAGTGTTCTTGGCTCCCAAT
385 TCTTGTGACACCAAAGCATCAATGCCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCAAT
1071627 CTTGAAAAGAATGGAGACTGTTATGAC
450 CTTGAAAAGAATGGAGACTGTTATGAC
* * * *
1071654 GATCGATCCTTGTCATATTTATGGGATGAATTTTGATTTTAAAGAAAATAGGGCAAA-AAAAGAT
1 AATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
* * * * * *
1071718 TTTCACGCAAAAGAAAATCATCATTATCATTTATCCTAATAAGGAGAAGGTGTTTATAGTGCCTA
66 TTCCATGCAAAAGAAAATCATCAATATCATTTATCATAATGAGGAGAATGTGTTTATAGTGCCTA
* * *
1071783 ATCACAAAATGAATGAAGATCATTACTAGAATCCGTGTTTGTCTCATTTGAGACACGAACTTAGA
131 ATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGA
* ** * * * *
1071848 CTTTGCAAAAATTAGCAGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATTAATATCGTGTATTCT
196 CTTTGCAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCT
* * * * *
1071913 TATGAGAAGACTATGTTTATAGTGCCTAATCCTGAAAAGAATGGGGATTAGTACGAGTCTTCATG
261 AATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAG-ATTCATG
* * * * * *
1071978 GTTGCCTTATTT-ATGAGGA-AAACTTTGATTCTATC-AAAATTGGTGGAAATAACAGGTTTTCT
325 TTTGTCTTATTTGA-GA-GACAAACTTTGATTCTATCAAAAAATGGTGGAAAGAAAAGCTTTTCT
* * * * **
1072040 TGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTACTCCTCATTCCCAATCTT
388 TGTGACACCAAAGCATCAATGCCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATCTT
* * *
1072105 GAAACGAATGGAGGCTATTATGAC
453 GAAAAGAATGGAGACTGTTATGAC
* * *** * * *
1072129 AAACGATTCTTATCATATTTAAGGGATGAATTACAATTTTAAAGAAAATAGGGTAAAGAAAACAT
1 AATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
* *
1072194 TTCCATGCAAAAGAAAATCGTCAATATCATTTATCATAATGAGGAGAATGTGTTTATAATGCCTA
66 TTCCATGCAAAAGAAAATCATCAATATCATTTATCATAATGAGGAGAATGTGTTTATAGTGCCTA
* * * *
1072259 ATCTCAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTGGATGCATAAACTTAGA
131 ATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGA
* ** * * * * *
1072324 CTTTACAATTATTGGTGGGAAAAAGGTCTTTCTTACAAAACCAAAGCATCAATGTCGTGTATCCT
196 CTTTGCAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCT
* * * ** *
1072389 AATGAAAAGACTATGTTTATGGTGCCTAATACT-AAAAGTAGTGGGGATTAGTGCGATGATTCTT
261 AATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAG-AATGGGGATTAGTATGA-GATTCAT
* * * * *
1072453 GTTTATGTTATTTGAGAGACAAACTTTGATTCTATCAAAAAATAGTGGAAAGAAAACCATTTCTT
324 GTTTGTCTTATTTGAGAGACAAACTTTGATTCTATCAAAAAATGGTGGAAAGAAAAGCTTTTCTT
* * * *
1072518 GTGATACCAACA-CATCAATGCCATGTATCCTAATGAAGGGAATGTTTTCTTAGTTCCCAATCTT
389 GTGACACCAA-AGCATCAATGCCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATCTT
* *
1072582 GAAAATAATGGAGATTGTTATGAC
453 GAAAAGAATGGAGACTGTTATGAC
* * * *
1072606 AATCAATTCTTATCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGATAATAT
1 AATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
* * * * *
1072671 TTCCATGCAAAAGAAAA-CGTAAATAACATTTATCATAACGAGGAGAATGTGTTTATAATGCCTA
66 TTCCATGCAAAAGAAAATCATCAATATCATTTATCATAATGAGGAGAATGTGTTTATAGTGCCTA
* * * * *
1072735 ATCACAAAAAGAATGAAGATCCTTGCTAGAAAT-CATGTTTGTCTCCTTTGAGGCATGAACTTAA
131 ATCACAAAATGAATGAAGATCATTACTAG-AATCCATGTTTGTCTCATTTGAGGCATGAACTTAG
* * *
1072799 ACTTTACAAAAATTGGCGGGAAAAAAGCATTTCTTGCGAAACCAAAGCATCAATATCGTGTATCC
195 ACTTTGCAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCC
*
1072864 TAATAAGAAGACTATGTTTAT
260 TAATGAGAAGACTATGTTTAT
1072885 TGATGAAAGC
Statistics
Matches: 4563, Mismatches: 822, Indels: 204
0.82 0.15 0.04
Matches are distributed among these distances:
466 78 0.02
467 346 0.08
468 46 0.01
469 228 0.05
470 69 0.02
471 33 0.01
472 126 0.03
473 429 0.09
474 821 0.18
475 1417 0.31
476 791 0.17
477 178 0.04
478 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (476 bp):
AATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
TTCCATGCAAAAGAAAATCATCAATATCATTTATCATAATGAGGAGAATGTGTTTATAGTGCCTA
ATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGA
CTTTGCAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCT
AATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGATTCATGT
TTGTCTTATTTGAGAGACAAACTTTGATTCTATCAAAAAATGGTGGAAAGAAAAGCTTTTCTTGT
GACACCAAAGCATCAATGCCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATCTTGAA
AAGAATGGAGACTGTTATGAC
Found at i:1070096 original size:942 final size:945
Alignment explanation
Indices: 1066930--1072884 Score: 7338
Period size: 942 Copynumber: 6.3 Consensus size: 945
1066920 GTAATCGATC
* * *
1066930 CTTGTCATATTT-ATGGAATGAATTTTGATTTTAAGAAAAATAG-G-ATAATTAAAAGATTTTCA
1 CTTGTCATATTTGA-GGGATGAATTTTGATTTTAAGGAAAATAGAGCA-AA-GAAAAGATTTTCA
** ** * * * *
1066992 TGCAAAAGAAAATCATCATTATCATTTATCCTAATGAGGAGAATATGTTTATAGTACCTAATCTC
63 TGCAAAAGAAAATCATCAACATCATTTATCCTAAAAAGGAGAATGTGTTTATTGTGCCTAATCAC
* * * * ** * * * *
1067057 AAAAAGAATAAAGATCCTTGCTATAATTCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTA
128 AAAATGAATGAAGATCATTTCTGGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTG
** ** * * * *
1067122 TTAAAATTTATGGGAAAAAAGCCTTTCTTGCCAAACCAAAGCATCAATATCGTGTATCCTTATCA
193 CAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATTAATATCGTGTATCCTTATGA
* * * * * * * * * * * *
1067187 GAAGATTGTGTTTCTGGTGCCTAATCTTAAAAAGAATGGCGATTAGAATGACTGTTAATGTTTGT
258 GAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTACGAGTCTTCATGGTTGT
* ** * * * **
1067252 CTTATTTAAGA-GACAAACTTTGATTCTATCAAAAA-CATAGGAAAGAGAAGGTTTTCTTATGAC
323 CTTATTTATGAGGA-AAACTTTGATTCTATCAAAAATGGT-GGAAATAAAAGTTTTTCTTGCGAC
* ** * * * * ** * * * *
1067315 CCCAAAGCATCTGTGTCGTGTAT-CTCAATGAAAGGAATGTGTTTTTGGTTTCCAATCTTGTAAT
386 ACCAAAGCATCAATGTCATGCATCCT-AATGAAGGGAATGTATTCCTAGTTCCCAATCTTGAAAA
* * *
1067379 GAATGGAAACTG-T-T-AC-AA-GATTCAGTGCTTGCCTTATTTCAAA-GATGAATTTTGATTTT
450 GAATGGAGACTGTTATGACAAATGATTCA-TG--T--CATATTT-AAAGGATGAATTTTAATTTT
* * * ** *
1067438 ATGGAAAATAGGG-AAA-GAGCAGATTTCCAACCAAAATAAAATCATCAGTATCATTTATCATAA
509 AAGGAAAATAGGGTAAAGGA-AACATTTCCATGC-----AAAATCATCAATATCATTTATCATAA
* * * *
1067501 CT-AGAAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCCTTACTAGAACCCATGT
568 -TGAGGAGAATGTGTTTATAATGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
* * * * *
1067565 TGGTCTCATTTG-TGGCATAAACATAGACTTTGCAAAAATTGGGGGGAAAAAAGCTTTTCTCGCA
632 TTGTCTCATTTGAT-GCATGAACTTAGACTTTGCAAAAATTGGTGGGAAAAAAGC-TTTCTTGCA
* * * *
1067629 AAACCAAAGCATGAGTATCGTGTATCCTAATGAGAAGACTATGTTCATGGTGCCTAATGCTAAAA
695 AAACCAAAGCATCAATATCGTGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATGCTAAAA
* * * * *
1067694 ATAGTGGGGATTAGTACGATGATTCATGTTTATGTTATTTGAGAGACAAACTTTGATTCTATCAA
760 ATAATGGGGATTAGTATGACGATTCTTGTATATGTTATTTGAGAGACAAACTTTGATTCTATC-A
* * * *
1067759 AAAATGGTGGAAAGAAAACCATTTCTTGTGATACCAAAGCATCAATGCCAT-TATCCTAATGAAG
824 AAAACGATGGAAAGAAAACCATTTCTTGTCACACCAAAGCATCAATGCCATGTATCCTAATGAAG
* * * * * * * * * *
1067823 GGCATGTGTTCTTAGTTCCCAATCCTAAAAAGAATGGAGATTGTTATGACAATCGATT
889 GGAATGT-TTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTATAAGAATCAATG
* * * * *
1067881 CTTATCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGATAATATTTTCATGC
1 CTTGTCATATTTGAGGGATGAATTTTGATTTTAAGGAAAATAGAGCAAAGAAAAGATTTTCATGC
* * * *
1067946 AAAAGAAAATCATAAATATCATTTATCGTAACAAGGAGAATGTGTTTATTGTGCCTAATCACAAA
66 AAAAGAAAATCATCAACATCATTTATCCTAAAAAGGAGAATGTGTTTATTGTGCCTAATCACAAA
* * * * * * * * * *
1068011 ATGAATGAAAATCCTTGCTAGAATTCATGTTTGTCTCA-TTAAGGCATGATCTTAGACTTTACAA
131 ATGAATGAAGATCATTTCTGGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAA
* * * * * * *
1068075 AAATTGGTGGGAAAAAAGCCTTTCTTGTGAAACCAAAGTATCAATATCGTGTCTTCTAATGAGAA
196 AAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATTAATATCGTGTATCCTTATGAGAA
* * *
1068140 AACTATGTTTATGGTGCCTAATCCTGAGAAGAATGGGGATTAGTATGAGTCTTCATGGTTGTCTT
261 GACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTACGAGTCTTCATGGTTGTCTT
*
1068205 ATTTAAGAGGAAAACTTTGATTCTATCAAAAATGGTGGAAATAAAAGTTTTTCTTGCGACACCAA
326 ATTTATGAGGAAAACTTTGATTCTATCAAAAATGGTGGAAATAAAAGTTTTTCTTGCGACACCAA
* * *
1068270 AGCATCAATCTCATGCATCCTAATGAAGGGAATGTATTCTTAGTTCCCAATCTTGAAAATAATGG
391 AGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCCTAGTTCCCAATCTTGAAAAGAATGG
* * *
1068335 AGACTGTTATGACAAACGATTCTTGTCATATTTAAGGGATGAATTTTAATTTTAAGGAAAATAGG
456 AGACTGTTATGACAAATGATTCATGTCATATTTAAAGGATGAATTTTAATTTTAAGGAAAATAGG
* * * *
1068400 GTAAA--AAATTATTTTCATGCAAAAGAAAATCATAAATATCATTTATCATAGTGAGGAGAATGT
521 GTAAAGGAAA-CATTTCCATGC-----AAAATCATCAATATCATTTATCATAATGAGGAGAATGT
* * * *
1068463 GTTTATAGTGGCTAATCAGAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTTTCATTTGA
580 GTTTATAATGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA
* * * * *
1068528 GGCACGAACTTAGACTTTAC-AAAATTGGTGGGAAAAAAGCCTTGCTTGCAAAACCAAATCATCA
645 TGCATGAACTTAGACTTTGCAAAAATTGGTGGGAAAAAAG-CTTTCTTGCAAAACCAAAGCATCA
* *
1068592 ATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATGCTAAAAGTAATGGGGATTAG
709 ATATCGTGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATGCTAAAAATAATGGGGATTAG
* * * ** * *
1068657 TTTGACGATTCGTGTTTGCGTTATTTGAGAGACAAACTTTGGTTCGATCCAAAAACGATGGAAAG
774 TATGACGATTCTTGTATATGTTATTTGAGAGACAAACTTTGATTCTAT-CAAAAACGATGGAAAG
* * * *
1068722 AAAATCATTTCTTGTGACACCAAAGCATCAAAGGCATGTATCCTAATGAAGGGAATGTTTCTTGG
838 AAAACCATTTCTTGTCACACCAAAGCATCAATGCCATGTATCCTAATGAAGGGAATGTTTCTTGG
** **
1068787 TTCCCAATCTTGAAAAGGGTGGAGACTATTGCAAGAATCAATG
903 TTCCCAATCTTGAAAAGAATGGAGACTATTATAAGAATCAATG
* * *
1068830 CTTGTCATATTTGAGGGTTGAATTTT-ATTTTAAGAAAAATAGAGCAAAGAAAAGATTTCCATGC
1 CTTGTCATATTTGAGGGATGAATTTTGATTTTAAGGAAAATAGAGCAAAGAAAAGATTTTCATGC
** * ** * * * *
1068894 AAAA-AAAATCATGTACATCTTTTATCCTAATGAGGAGAATCTGTTTATTGTTCCTGATCAGAAA
66 AAAAGAAAATCATCAACATCATTTATCCTAAAAAGGAGAATGTGTTTATTGTGCCTAATCACAAA
1068958 ATGAATGAAGATCATTTCTGGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAA
131 ATGAATGAAGATCATTTCTGGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAA
* * *
1069023 AAATTGGTAGGAAGAAAGCCTTTCTTGCGAAACCAATGCATTAATATCATGTATCCTTATGAGAA
196 AAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATTAATATCGTGTATCCTTATGAGAA
* * *
1069088 GACTATGTTTATGGTGCGTAATCCTGAAAAGAATGGGGATTAGTGCGAGTTTTCATGGTTGTCTT
261 GACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTACGAGTCTTCATGGTTGTCTT
*
1069153 ATTTATGAGG-AAACTTTGATTCTATTAAAAATGGTGGAAATAAAAGTTTTTCTTGCGACACC-A
326 ATTTATGAGGAAAACTTTGATTCTATCAAAAATGGTGGAAATAAAAGTTTTTCTTGCGACACCAA
*
1069216 AGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCCTAGTTCCCAATGTTGAAAAGAATGG
391 AGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCCTAGTTCCCAATCTTGAAAAGAATGG
1069281 AGACTGTTATGACAAATGATTCATGTCATATTTAAAGGATGAATTTTAATTTTAAGGAAAATAGG
456 AGACTGTTATGACAAATGATTCATGTCATATTTAAAGGATGAATTTTAATTTTAAGGAAAATAGG
*
1069346 GTAAAGGAAACATTTCCATGC-AAA-CATCAATATCACTTATCATAATGAGGAGAATGTGTTTAT
521 GTAAAGGAAACATTTCCATGCAAAATCATCAATATCATTTATCATAATGAGGAGAATGTGTTTAT
* *
1069409 AAAGCCTAATCTCAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGATGCATG
586 AATGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGATGCATG
*
1069474 AACTTAGACTTTGTAAAAATTGGTGGGAAAAAAGCTTTCTTGCAAAACCAAAGCATCAATATCGT
651 AACTTAGACTTTGCAAAAATTGGTGGGAAAAAAGCTTTCTTGCAAAACCAAAGCATCAATATCGT
* * *
1069539 GTATCCCAATGAGAGAAACTATGTTTGTGGTGCCTAATGCTAAAAATATTGGGGATTAGTATGAC
716 GTATCCTAATGAGA-AAACTATGTTTATGGTGCCTAATGCTAAAAATAATGGGGATTAGTATGAC
1069604 GATTCTTGTATATGTTATTTGAGAGACAAACTTTGATTCTATCAGAAAACGATGGAAAGAAAACC
780 GATTCTTGTATATGTTATTTGAGAGACAAACTTTGATTCTATCA-AAAACGATGGAAAGAAAACC
* *
1069669 ATTTCTTGTCACACCAAAGCATTAATGCCATGTATCCTAACGAAGGGAATGTTTCTTGGTTCCCA
844 ATTTCTTGTCACACCAAAGCATCAATGCCATGTATCCTAATGAAGGGAATGTTTCTTGGTTCCCA
** *
1069734 ATCTTGAAAAGGGTGGAGACTATTGTAAGAATCAATG
909 ATCTTGAAAAGAATGGAGACTATTATAAGAATCAATG
* * *
1069771 CTTGTCATATTTGAGGGTTGAATTTTTATTTTAAGGTAAATAGAGCAAAGAAAAGA-TTTCAATG
1 CTTGTCATATTTGAGGGATGAATTTTGATTTTAAGGAAAATAGAGCAAAGAAAAGATTTTC-ATG
* * * * * * *
1069835 CAAAA-ATAATCATCAACATCTTTTATCCTAAAAACGAGAGTGTGTTTATTTTGCCTGATCAGAA
65 CAAAAGAAAATCATCAACATCATTTATCCTAAAAAGGAGAATGTGTTTATTGTGCCTAATCACAA
*
1069899 AATGAATGAAGATCATTTCGGGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTGCA
130 AATGAATGAAGATCATTTCTGGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTGCA
* *
1069964 AAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATTAATATCATGTATCCTTATGAGA
195 AAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATTAATATCGTGTATCCTTATGAGA
* * * *
1070029 ATACTATGTTTATGGTGCGTAATCCTGAAAAGAATGGGGATTAGTGCGAGTTTTCATGGTTGTCT
260 AGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTACGAGTCTTCATGGTTGTCT
* * *
1070094 TATTTATGAGG-AAACTTTGATTCTATTAGAAATGGTGGAAATAAAAGTTTTGCTTGCGACACC-
325 TATTTATGAGGAAAACTTTGATTCTATCAAAAATGGTGGAAATAAAAGTTTTTCTTGCGACACCA
* *
1070157 AAGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCCTGGTTCCCAATGTTGAAAAGAATG
390 AAGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCCTAGTTCCCAATCTTGAAAAGAATG
1070222 GAGACTGTTATGACAAATGATTCATGTCATATTTAAAGGATGAATTTTAATTTTAAGGAAAATAG
455 GAGACTGTTATGACAAATGATTCATGTCATATTTAAAGGATGAATTTTAATTTTAAGGAAAATAG
*
1070287 GGTAAAGGAAACATTTCCATGC-AAA-CGTCAATATCATTTATCATAATGAGGAGAATGTGTTTA
520 GGTAAAGGAAACATTTCCATGCAAAATCATCAATATCATTTATCATAATGAGGAGAATGTGTTTA
* * *
1070350 TAAAGCCTAATCTCAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGATACAT
585 TAATGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGATGCAT
1070415 GAACTTAGACTTTGCAAAAATTGGTGGGAAAAAAGCTTTCTTGCAAAACCAAAGCATCAATATCG
650 GAACTTAGACTTTGCAAAAATTGGTGGGAAAAAAGCTTTCTTGCAAAACCAAAGCATCAATATCG
* *
1070480 TGTATCCCAATGAGAAAAACTATGTTTATGGTGCCTAATGCTAAAAATATTGGGGATTAGTATGA
715 TGTATCCTAATGAG-AAAACTATGTTTATGGTGCCTAATGCTAAAAATAATGGGGATTAGTATGA
* * *
1070545 CGATTCTGGTATGTGTTATTTGAGAGACAAACTTTGATTCTATCAGAAAATGATGGAAAGAAAAC
779 CGATTCTTGTATATGTTATTTGAGAGACAAACTTTGATTCTATCA-AAAACGATGGAAAGAAAAC
1070610 CATTTCTTGTCACACCAAAGCATCAATGCCATGTATCCTAATGAAGGGAATGTTTCTTGGTTCCC
843 CATTTCTTGTCACACCAAAGCATCAATGCCATGTATCCTAATGAAGGGAATGTTTCTTGGTTCCC
* *
1070675 AATCTTGAAAA-AGGTGGAGACTATTGTAAGAATCAATG
908 AATCTTGAAAAGA-ATGGAGACTATTATAAGAATCAATG
* * * *
1070713 CTTGTCATATTTGAGGGTTGAATTTTTATTTTAAGGTAAATAGACCAAAGAAAAGATTTTCATGC
1 CTTGTCATATTTGAGGGATGAATTTTGATTTTAAGGAAAATAGAGCAAAGAAAAGATTTTCATGC
* * *
1070778 AAAA-ATAATCATCAACATCTTTTATCCTAAAAAGGAGAATGTGTTTATTGTGCCTGATCACAAA
66 AAAAGAAAATCATCAACATCATTTATCCTAAAAAGGAGAATGTGTTTATTGTGCCTAATCACAAA
*
1070842 ATGAATGAAGATCATTTCGGGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAA
131 ATGAATGAAGATCATTTCTGGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAA
*
1070907 AAATTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATTAATATCGTGTATCCTTATGAGAA
196 AAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATTAATATCGTGTATCCTTATGAGAA
* *
1070972 GACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGCATGAGTCTTCATGGTTGTCTT
261 GACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTACGAGTCTTCATGGTTGTCTT
* *
1071037 ATTTATGAGGAAAACTTTGATTCTATAAAAAATGGTGGAAATAAAAGTTTTTCTTGTGACACCAA
326 ATTTATGAGGAAAACTTTGATTCTATCAAAAATGGTGGAAATAAAAGTTTTTCTTGCGACACCAA
* * * * * * *
1071102 AGCTTCAATGTCATGCATCCTAATGAAGAGAATGCATTCTTGGTTCCCAAGCTTGAAAGGAATGG
391 AGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCCTAGTTCCCAATCTTGAAAAGAATGG
* * * * ** * *
1071167 AGACTGTTATGAC-AATCGATTCTTGTCCTATTTAAGGGATGAACTTTGTTTTTATGGGAAATAG
456 AGACTGTTATGACAAAT-GATTCATGTCATATTTAAAGGATGAATTTTAATTTTAAGGAAAATAG
* * * *
1071231 GGCAAAGAAAAGATTTCCATGCAAAAGAAAAAT-ATCAATATCGTTTATCCA-AATGAGGAGAAT
520 GGTAAAGGAAACATTTCCATGC------AAAATCATCAATATCATTTAT-CATAATGAGGAGAAT
* * * * * *
1071294 GTGTTTATAGTGCCTAAGCACAAAATGAATAAACAT-ATTTACTAGATTCCACGTTTGTCTCATT
578 GTGTTTATAATGCCTAATCACAAAATGAATGAAGATCA-TTACTAGAATCCATGTTTGTCTCATT
* ** * * *
1071358 TGAGGCATGAACTTAGACTTCACAAAAATTGGTGGG-AAAAAGCTTTTCTTTCGAAACCAAATCA
642 TGATGCATGAACTTAGACTTTGCAAAAATTGGTGGGAAAAAAGC-TTTCTTGCAAAACCAAAGCA
* * * * * * * **
1071422 TCCATATCATGTATCCTAA-AAGGAAGACTATGTTTATGGTGCCTAATCCAAAAAAGAATAAGGA
706 TCAATATCGTGTATCCTAATGA-GAAAACTATGTTTATGGTGCCTAATGCTAAAAATAATGGGGA
** * * * * *
1071486 TTAGTATGATTATTCATG-AT-TGTCTTATATAAGAGACAAACTTTGATTTTTTCAAAAAC-AGT
770 TTAGTATGACGATTCTTGTATATG--TTATTTGAGAGACAAACTTTGATTCTATCAAAAACGA-T
* * * * * * *
1071548 GGAAAGAAAAGCTTTTCTTG-CGACAAC-AACCCTCAATGCCATGCATCCTAATGAAGGGAAAGT
832 GGAAAGAAAACCATTTCTTGTC-ACACCAAAGCATCAATGCCATGTATCCTAATGAAGGGAATGT
* * * * *
1071611 GTTCTTGGCTCCCAATCTTGAAAAGAATGGAGACTGTTATGACG-ATCGATC
896 -TTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTAT-AAGAATCAATG
* * *
1071662 CTTGTCATATTT-ATGGGATGAATTTTGATTTTAAAGAAAATAGGGCAAA-AAAAGATTTTCACG
1 CTTGTCATATTTGA-GGGATGAATTTTGATTTTAAGGAAAATAGAGCAAAGAAAAGATTTTCATG
** * * *
1071725 CAAAAGAAAATCATCATTATCATTTATCCTAATAAGGAGAAGGTGTTTATAGTGCCTAATCACAA
65 CAAAAGAAAATCATCAACATCATTTATCCTAAAAAGGAGAATGTGTTTATTGTGCCTAATCACAA
* * * * *
1071790 AATGAATGAAGATCATTACTAGAATCCGTGTTTGTCTCATTTGAGACACGAACTTAGACTTTGCA
130 AATGAATGAAGATCATTTCTGGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTGCA
* ** * *
1071855 AAAATTAGCAGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATTAATATCGTGTATTCTTATGAGA
195 AAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATTAATATCGTGTATCCTTATGAGA
* *
1071920 AGACTATGTTTATAGTGCCTAATCCTGAAAAGAATGGGGATTAGTACGAGTCTTCATGGTTGCCT
260 AGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTACGAGTCTTCATGGTTGTCT
* * *
1071985 TATTTATGAGGAAAACTTTGATTCTATCAAAATTGGTGGAAATAACAGGTTTTCTTGCGACACCA
325 TATTTATGAGGAAAACTTTGATTCTATCAAAAATGGTGGAAATAAAAGTTTTTCTTGCGACACCA
* *
1072050 AAGCATCAATGTCATGCATCCTAATGAAGGGAATGTACTCCTCA-TTCCCAATCTTGAAACGAAT
390 AAGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCCT-AGTTCCCAATCTTGAAAAGAAT
* * * * * * ** *
1072114 GGAGGCTATTATGACAAACGATTCTTATCATATTTAAGGGATGAATTACAATTTTAAAGAAAATA
454 GGAGACTGTTATGACAAATGATTCATGTCATATTTAAAGGATGAATTTTAATTTTAAGGAAAATA
* *
1072179 GGGTAAAGAAAACATTTCCATGCAAAAGAAAATCGTCAATATCATTTATCATAATGAGGAGAATG
519 GGGTAAAGGAAACATTTCCATGC-----AAAATCATCAATATCATTTATCATAATGAGGAGAATG
* *
1072244 TGTTTATAATGCCTAATCTCAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTGG
579 TGTTTATAATGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG
* * ** * *
1072309 ATGCATAAACTTAGACTTTACAATTATTGGTGGGAAAAAGGTCTTTCTTACAAAACCAAAGCATC
644 ATGCATGAACTTAGACTTTGCAAAAATTGGTGGGAAAAAAG-CTTTCTTGCAAAACCAAAGCATC
* * * *
1072374 AATGTCGTGTATCCTAATGA-AAAGACTATGTTTATGGTGCCTAATACTAAAAGTAGTGGGGATT
708 AATATCGTGTATCCTAATGAGAAA-ACTATGTTTATGGTGCCTAATGCTAAAAATAATGGGGATT
** * * **
1072438 AGTGCGATGATTCTTGTTTATGTTATTTGAGAGACAAACTTTGATTCTATCAAAAAATAGTGGAA
772 AGTATGACGATTCTTGTATATGTTATTTGAGAGACAAACTTTGATTCTATCAAAAACGA-TGGAA
* *
1072503 AGAAAACCATTTCTTGTGATACCAACA-CATCAATGCCATGTATCCTAATGAAGGGAATGTTTTC
836 AGAAAACCATTTCTTGTCACACCAA-AGCATCAATGCCATGTATCCTAATGAAGGGAATG-TTTC
* * * * * * *
1072567 TTAGTTCCCAATCTTGAAAATAATGGAGATTGTTATGACAATCAATT
899 TTGGTTCCCAATCTTGAAAAGAATGGAGACTATTATAAGAATCAATG
* * * * * *
1072614 CTTATCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGATAATATTTCCATGC
1 CTTGTCATATTTGAGGGATGAATTTTGATTTTAAGGAAAATAGAGCAAAGAAAAGATTTTCATGC
* * * * * ** **
1072679 AAAAGAAAA-CGTAAATAACATTTATCATAACGAGGAGAATGTGTTTATAATGCCTAATCACAAA
66 AAAAGAAAATCATCAACATCATTTATCCTAAAAAGGAGAATGTGTTTATTGTGCCTAATCACAAA
* * * * * * * * *
1072743 AAGAATGAAGATCCTTGCTAGAAAT-CATGTTTGTCTCCTTTGAGGCATGAACTTAAACTTTACA
131 ATGAATGAAGATCATTTCT-GGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTGCA
* * * * * *
1072807 AAAATTGGCGGGAAAAAAGCATTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATAAGA
195 AAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATTAATATCGTGTATCCTTATGAGA
1072872 AGACTATGTTTAT
260 AGACTATGTTTAT
1072885 TGATGAAAGC
Statistics
Matches: 4439, Mismatches: 491, Indels: 147
0.87 0.10 0.03
Matches are distributed among these distances:
940 149 0.03
941 247 0.06
942 1191 0.27
943 56 0.01
944 130 0.03
946 129 0.03
947 141 0.03
948 250 0.06
949 885 0.20
950 609 0.14
951 325 0.07
952 289 0.07
953 29 0.01
954 4 0.00
955 5 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (945 bp):
CTTGTCATATTTGAGGGATGAATTTTGATTTTAAGGAAAATAGAGCAAAGAAAAGATTTTCATGC
AAAAGAAAATCATCAACATCATTTATCCTAAAAAGGAGAATGTGTTTATTGTGCCTAATCACAAA
ATGAATGAAGATCATTTCTGGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAA
AAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATTAATATCGTGTATCCTTATGAGAA
GACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTACGAGTCTTCATGGTTGTCTT
ATTTATGAGGAAAACTTTGATTCTATCAAAAATGGTGGAAATAAAAGTTTTTCTTGCGACACCAA
AGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCCTAGTTCCCAATCTTGAAAAGAATGG
AGACTGTTATGACAAATGATTCATGTCATATTTAAAGGATGAATTTTAATTTTAAGGAAAATAGG
GTAAAGGAAACATTTCCATGCAAAATCATCAATATCATTTATCATAATGAGGAGAATGTGTTTAT
AATGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGATGCATG
AACTTAGACTTTGCAAAAATTGGTGGGAAAAAAGCTTTCTTGCAAAACCAAAGCATCAATATCGT
GTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATGCTAAAAATAATGGGGATTAGTATGACG
ATTCTTGTATATGTTATTTGAGAGACAAACTTTGATTCTATCAAAAACGATGGAAAGAAAACCAT
TTCTTGTCACACCAAAGCATCAATGCCATGTATCCTAATGAAGGGAATGTTTCTTGGTTCCCAAT
CTTGAAAAGAATGGAGACTATTATAAGAATCAATG
Done.