Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold398
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1204187
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 7 of 7
Found at i:1074508 original size:12 final size:11
Alignment explanation
Indices: 1074491--1074561 Score: 51
Period size: 12 Copynumber: 6.5 Consensus size: 11
1074481 AAGAATTGAG
1074491 AGGAGGGATGAT
1 AGGAGGGA-GAT
*
1074503 AGGAGGAGAGAC
1 AGGAGG-GAGAT
1074515 AGGA--GAGAT
1 AGGAGGGAGAT
*
1074524 AGTA--GAGAT
1 AGGAGGGAGAT
1074533 AGGAGGGATGAT
1 AGGAGGGA-GAT
*
1074545 AGGAGGAGAGAC
1 AGGAGG-GAGAT
1074557 AGGAG
1 AGGAG
1074562 AGATAATAGA
Statistics
Matches: 49, Mismatches: 5, Indels: 10
0.77 0.08 0.16
Matches are distributed among these distances:
9 15 0.31
11 2 0.04
12 28 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.48, T:0.10
Consensus pattern (11 bp):
AGGAGGGAGAT
Found at i:1074538 original size:42 final size:42
Alignment explanation
Indices: 1074488--1074594 Score: 187
Period size: 42 Copynumber: 2.5 Consensus size: 42
1074478 AGAAAGAATT
*
1074488 GAGAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAGTAGA
1 GAGAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAATAGA
*
1074530 GATAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAATAGA
1 GAGAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAATAGA
*
1074572 GAGAGGAGGGATGACAGGAGGAG
1 GAGAGGAGGGATGATAGGAGGAG
1074595 GAGAGAAGAA
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 61 1.00
ACGTcount: A:0.40, C:0.03, G:0.48, T:0.09
Consensus pattern (42 bp):
GAGAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAATAGA
Found at i:1080691 original size:475 final size:474
Alignment explanation
Indices: 1079564--1083480 Score: 4393
Period size: 476 Copynumber: 8.3 Consensus size: 474
1079554 GTTGTCACCA
* * **
1079564 TTTATGGTGCCTAATCCTGAGAAGAATGGGGATTAGTATAAGTCCTCATGGTTGTCTTATTTAAG
1 TTTATGGTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATGGTTGTCTTATTTAAG
* * * * *
1079629 AGGA-AAACTTTGATTTTATC-AAAACTGGTGGAAATAAAAGTTTTTCTTGCGACACCAAAGCTT
65 AGGACAAACTTTGATTCTATCAAAAAC-GGTGGAAAGAAAAGCTTTTCTTGAGACACCAAAGCAT
* *
1079692 CAATGTCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATCTTGAAAAGAATGGAGAGT
129 CAATGCCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATCTTGAAAAGAATGGAGACT
* * * * * * * *
1079757 ATTATGGCAATTGATTCTTGTCACATTTAAGGGATAAACTTTGATTTTATGGGAAATAGGGCAAA
194 GTTATGACAATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAA
* * * *
1079822 GAAAAGATTTCCATGCACAAGAAAAACATCAATATCGTTTATCCAAATGAGGAGAATGTGTTTAT
259 GAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTAT
* * * *
1079887 AGTGCCTAAGCACAAAATGAATGAAAATCTTTACTAGATTCCATGTTTGTCTCATTTGAGGCATG
324 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATG
* * * * * *
1079952 AACTTAGACTTTACAAAAATTGGTGGGAAAAAGCCTTTCTTTCGAAGCCAAATCATCCATATCAT
389 AACTTAGACTTTACAAAAATT-GTGGGAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGT
** *
1080017 GTAT-CTTAAAAGGAAAACTATG
453 GTATCCTTATGA-GAAGACTATG
* * * *
1080039 TTTATGGTGCCTAATCCAGAAAAGAATGAGGATTAGTATGATTATTCATGATTGTCTTATATAAG
1 TTTATGGTGCCTAATCCTGAAAAGAATG-GGATTAGTATGAGTATTCATGGTTGTCTTATTTAAG
* * * *
1080104 A-GACAAACTTTGAGTTTTTTTCAAAAACGGTGGAAAGAAAAGCTTTTCTTGAGACAGCAAA-CC
65 AGGACAAACTTTGA--TTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGAGACACCAAAGCA
*
1080167 TCAATGCCATGCATCCTAATGAAGGGGAAATG--TTCTTGGCTCCCAATCTTGAAAAGAATGGAG
128 TCAATGCCATGCATCCTAATGAA-GGG-AATGTATTCTTGGTTCCCAATCTTGAAAAGAATGGAG
* * * * *
1080230 ACTGTAATGACAATCGATCCTTGCCATATTTAAGGGATGAATTTTGATTTTAAAGAAACTAGGGC
191 ACTGTTATGACAATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGC
* * * * * *
1080295 AAA-AACAGATTTTCACGCAAAAGAAAATCATCATTATCATTTATCCTAATAAGGAGAAGGTGTT
256 AAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTT
* * * *
1080359 TATAGTGCCTAATTACACAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTGGAGAC
321 TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGC
** * ** ** * *
1080424 ACAAACTTAGACTTTGCAAAAATTAGCAGGAAGAAAGCCTTTCTTGTGAAACCAAAGCGTCCATA
386 ATGAACTTAGACTTTACAAAAATT-GTGGGAA-AAAGCCTTTCTTGCAAAACCAAAGCATCAATA
* *
1080489 TCGTGTATTCTTATGAGAAGGCTATG
449 TCGTGTATCCTTATGAGAAGACTATG
* * * * *
1080515 TTCATAGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGAGTCTTCATGGTTGCCTTATTTATG
1 TTTATGGTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATGGTTGTCTTATTTAAG
** * *
1080580 AGGA-AAACTTTGATTCTATCAAAATTGGTGGAAATAAAAGTTTTTCTTGAGACACCAAAGCATC
65 AGGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGAGACACCAAAGCATC
* * * * *
1080644 AATGTCATGCATCCTAATGAAGGGAATGTACTCCTCGTTCCCAATCTTGAAAAGAATGGAGGCTG
130 AATGCCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTG
* * * * *
1080709 TTATGACAAACGATTCTTGTCATATTTAAGGGATGAAATATAATTTTAAGGAAAATAGGGTAAAG
195 TTATGACAATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAG
* * *
1080774 AAAACATTTCCATGCAAAAGAAAATCATCAATATCATTTATCATAATGAGGAAAATGTGTTTATA
260 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* * * * * *
1080839 ATTCCTAATCTCAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTGGATGCATAA
325 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGA
* * * **
1080904 ACTTAGACTTTACAAATATTGGAGGGAAAAAGGCCTTTCTTGCAAAACCAAAGAATTTATATCGT
390 ACTTAGACTTTACAAAAATT-GTGGGAAAAA-GCCTTTCTTGCAAAACCAAAGCATCAATATCGT
*
1080969 GTATCCTAATGAGAAG-CTATG
453 GTATCCTTATGAGAAGACTATG
* * * * * * *
1080990 TTTATGGTGCCTAATACTAAAAACG-GTGGGGATTAGTACGA-TGATTCTTGTTTGTGTTATTTA
1 TTTATGGTGCCTAATCCTGAAAA-GAAT-GGGATTAGTATGAGT-ATTCATGGTTGTCTTATTTA
** * * *
1081053 AGA-GACAAACTTTGATTCTATCAAAAAATAGTGGAAAGAAAACCATTTCTTGTGACACCAAAGC
63 AGAGGACAAACTTTGATTCTATC-AAAAACGGTGGAAAGAAAAGCTTTTCTTGAGACACCAAAGC
* *
1081117 ATCAATGCCATGTATCCTAATGAAGGAAATGTATTCTTGGTTCCCAATCTTGAAAAGAATGGAGA
127 ATCAATGCCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATCTTGAAAAGAATGGAGA
* * * * * * * *
1081182 GTATTATGGCAATTGATTCTTGTCATATTTAAGGGATAAACTTTGATTTTATGGGAAATAGGGCA
192 CTGTTATGACAATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCA
** * * *
1081247 AAGAAAAGATTTTAATGCACAAGAAAAACATCAATATCGTTTATCCTAATGAGGAGAATGTGTTT
257 AAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTT
* * ** *
1081312 ATAGTGCCTAATCACAAAATGAATGAAAATCTTTACTAGTTTCCATGTTTGTCTCATTCGAGGCA
322 ATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCA
* *** * *
1081377 TGAACTTAGACTTCACAAAAATTGGTGGGAAAAAGCCTTTCTTTTGAAACCAAATCATCCATATC
387 TGAACTTAGACTTTACAAAAATT-GTGGGAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATC
* * **
1081442 ATGTATCCTAAACAGAAGACTATG
451 GTGTATCCTTATGAGAAGACTATG
* * ** * * * *
1081466 -TCATGGTGCCTAAACCAAAAAAGAATGAGGATTAGTATGATTATTCATGGTTATCTTGTATAAG
1 TTTATGGTGCCTAATCCTGAAAAGAATG-GGATTAGTATGAGTATTCATGGTTGTCTTATTTAAG
* * * ** *
1081530 A-GACAAACTTTGATTTTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGATAGGAAA-CTTC
65 AGGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGAGACACCAAAGCATC
* * * * * *
1081593 AATGCCATGCATCCTAATGAAGGGAAAGTGTCCCTAGTTCCCAATCTTGAAAAGAATGGAGATTG
130 AATGCCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTG
* * *
1081658 TTACGACAATCGATCCTTGTCATATTTAAGGGATGAATTTTGATTTTAAAGAAAATAGGGCAAA-
195 TTATGACAATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAG
* * * *
1081722 AAAGGATTTTCATGCAAAAGAAAATCATCATTATCATTTATCCTAATGAGGAGAATGTGTTTAGA
260 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* ** *
1081787 GTGCCTAATCATAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCGCGG
325 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGA
* * * * * ***
1081852 ACTTAAACTTTGCAAAAATTGGTGAGCAGAATGCCTTTCTTAG-AAAACCAAATTGTCAATATCG
390 ACTTAGACTTTACAAAAATT-GTG-GGAAAAAGCCTTTCTT-GCAAAACCAAAGCATCAATATCG
*
1081916 TGTATCCTTATGAGATGACTATG
452 TGTATCCTTATGAGAAGACTATG
* * * ** * ** * *
1081939 TTTATGGTGCCAAATCCTAAAAAGAGTGGGAACAAATATGAGTGCTCATGATTGTCTTCTTTAAG
1 TTTATGGTGCCTAATCCTGAAAAGAATGGG-ATTAGTATGAGTATTCATGGTTGTCTTATTTAAG
* * * *
1082004 AGG-CAAACTTTGATTCTTTCAAAAACAGTGGAAAGAGAAGCTTTTCTT-ATGACCCCAAAGCAT
65 AGGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGA-GACACCAAAGCAT
* * * * * * * * * *
1082067 CAATGTCATGTAACTTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAATGAATAGAGGCT
129 CAATGCCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATCTTGAAAAGAATGGAGACT
** * * * * * ** *
1082132 GTTACAAGAATC-AGTGCTTGCCTTATTTCATAGATGAATTTTGATTTTATGGAAAATAGGGCAA
194 GTTATGACAATCGA-TTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAA
* ** * * * * * *
1082196 AGAAAAGATTTTCAACCAAAAGAAAATTATCAGTATAATTTATCATAATTAGAAGAATGTGTTTA
258 AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
* * * * * * *
1082261 TAGTGCCTAATCACATAATAAAGGAAGATCCTTACTAGAATCCGTATTTGTCTCATTTGAGCCAT
323 TAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAT
* * *
1082326 GAACTTAGATTTTACAAAAATTGTTGGGAAAAAAGCCTTTCTTGCAAAACCAAAACATCAATATT
388 GAACTTAGACTTTACAAAAATTG-TGGG-AAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATC
*
1082391 GTGTATCCTGATGAGAAGACTATG
451 GTGTATCCTTATGAGAAGACTATG
* ** * *
1082415 TTTATGGTGCCTAATGCC-GAAAATAATAGATATTAGTATGACG-ATTCATGTTTGTGTTATTTA
1 TTTATGGTGCCTAAT-CCTGAAAAGAAT-GGGATTAGTATGA-GTATTCATGGTTGTCTTATTTA
* * * *
1082478 AGA-GACAAACTTTGATTCAATCAAAAAACGGTGGAAAGAAAACCATTTCTTGTGACACCAAAGC
63 AGAGGACAAACTTTGATTCTATC-AAAAACGGTGGAAAGAAAAGCTTTTCTTGAGACACCAAAGC
** *
1082542 ATCAATGCCATATATCCTAATGAAGGGAATGT-TTCTTGGTTCCCAATCTTGAAAAG-GTGGAGA
127 ATCAATGCCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATCTTGAAAAGAATGGAGA
* * ** * * * *
1082605 CT-AT-TGCAGGAATCGAAGCTTGTCATATTTGAGGGTTGAATTTTTATTTTAAGGAAAATAGAG
192 CTGTTATG-A-CAATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGG
* *
1082668 CAAAGAAAAGATTTCCATGCAAAA-AAATTCATC---ATCTTTTATCCTAATGAGGAGAATGTGT
255 CAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGT
* * * *
1082729 TTATTGTGCCTGATCACAAAATGAATGAAGATCATTTA-TGGAATCAATGTTTGTCTCATTTGAG
320 TTATAGTGCCTAATCACAAAATGAATGAAGATCA-TTACTAGAATCCATGTTTGTCTCATTTGAG
* * *
1082793 GCACGAACTTAGACTTTGCAAAAATTGGTGGGAAGAAAGCCTATCTTGCAAAACCAAAGCATCAA
384 GCATGAACTTAGACTTTACAAAAATT-GTGGGAA-AAAGCCTTTCTTGCAAAACCAAAGCATCAA
*
1082858 TATCATGTATCCTTATGAGAAGACTATG
447 TATCGTGTATCCTTATGAGAAGACTATG
* * *
1082886 TTTATGGTGCCTAATCCTGAAAAGAATGAGGATTAGTATGAGTCTTCATGGTTGTCTTATCTATG
1 TTTATGGTGCCTAATCCTGAAAAGAATG-GGATTAGTATGAGTATTCATGGTTGTCTTATTTAAG
* * * *
1082951 AGGA-AAACTTTGATTCTATCAAAAATGGTGGAAATAGAAGTTTTTCTTGCA-ACACCAAAGCAT
65 AGGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTG-AGACACCAAAGCAT
*
1083014 CAATGTCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATCTTGAAAAGAATGGAGACT
129 CAATGCCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATCTTGAAAAGAATGGAGACT
* * * *
1083079 GTTATGACAAAT-GATTTTTGTCATATTTAAGGGATGAATTTTAATTTTAAGGAAAATAGCGTAA
194 GTTATGAC-AATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAA
* *
1083143 AGAAAATATTTCCATGCAAAAGAAAATCATCAATATCATTTATCATAATGAGGAGAATGTGTTTA
258 AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
** * * * *
1083208 TAGTGCCTAATCACAAAATGGTTGAAGATCATTGCTAGAATGCATTTTTGCCTCATTTGAGGCAT
323 TAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAT
*
1083273 GAACTT-GACTTTACAAAAATTAGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGAATCAATATC
388 GAACTTAGACTTTACAAAAATT-GTGGG-AAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATC
* * *
1083337 GTGTATCATAATGAGAAGAATATG
451 GTGTATCCTTATGAGAAGACTATG
* * * * * * *
1083361 TTTATGGTGTCTAATGCTAAAAATAATGGGGATTAGTATGACG-ATTCATGTTTGTATTATTTGA
1 TTTATGGTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGA-GTATTCATGGTTGTCTTATTTAA
* * * * *
1083425 GA-GATAAACTTTTATTCTATCAAAAGACGGTGGAAAAAAAAGCTTTTTTTGTGACA
64 GAGGACAAACTTTGATTCTATCAAAA-ACGGTGGAAAGAAAAGCTTTTCTTGAGACA
1083481 GCAGGCATGA
Statistics
Matches: 2878, Mismatches: 495, Indels: 137
0.82 0.14 0.04
Matches are distributed among these distances:
470 68 0.02
471 242 0.08
472 213 0.07
473 181 0.06
474 188 0.07
475 807 0.28
476 1059 0.37
477 111 0.04
478 9 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (474 bp):
TTTATGGTGCCTAATCCTGAAAAGAATGGGATTAGTATGAGTATTCATGGTTGTCTTATTTAAGA
GGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGAGACACCAAAGCATCA
ATGCCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGT
TATGACAATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGA
AAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAG
TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAA
CTTAGACTTTACAAAAATTGTGGGAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTA
TCCTTATGAGAAGACTATG
Found at i:1083661 original size:217 final size:215
Alignment explanation
Indices: 1083267--1083687 Score: 560
Period size: 217 Copynumber: 1.9 Consensus size: 215
1083257 GCCTCATTTG
**
1083267 AGGCATGAACTTGACTTTACAAAAATTAGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGAATCA
1 AGGCATGAACTTGACTTTACAAAAATTAGAAGGAAAAAAGCCTTTCTTGCAAAACCAAAGAATCA
* * *
1083332 ATATCGTGTATCATAATGAGAAGAATATGTTTATGGTGTCTAATGCTAAAAATAATGGGGATTAG
66 ATATCGTGTATCATAATGAGAAGAATATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAG
* * * *
1083397 TATGACGATTCATGTTTGTATTATTTGAGAGATAAACTTTTATTCTATCAAAAGACGGTGGAAAA
131 TATGACGATTCATGGTTGTATTATTTAAGAGACAAACTTTGATTCTATCAAAA-ACGGTGGAAAA
1083462 AAAAGCTTTTTTTGTGACAGC
195 AAAAGCTTTTTTTGTGACAGC
* * * * *
1083483 AGGCATGAACTTAGACTTTGCAAAAATTGGCAAGG-AGAAAGCCTTTCTTGGAAAACCAAA-ATG
1 AGGCATGAACTT-GACTTTACAAAAATTAG-AAGGAAAAAAGCCTTTCTTGCAAAACCAAAGA-A
* * * * * *
1083546 TCAATATTGTGTATCCTTATGAGATGACTTTGTTTATGGTGCCTAATCCTAAAAAGAATGGGGAT
63 TCAATATCGTGTATCATAATGAGAAGAATATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGAT
* * *
1083611 TAGTATGA-GTCTTCATGGTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAACGGTGGA
128 TAGTATGACG-ATTCATGGTTGTATTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGA
*
1083675 AAGAAAAGCTTTT
192 AAAAAAAGCTTTT
1083688 CTTGCGATAG
Statistics
Matches: 177, Mismatches: 24, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
216 34 0.19
217 141 0.80
218 2 0.01
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (215 bp):
AGGCATGAACTTGACTTTACAAAAATTAGAAGGAAAAAAGCCTTTCTTGCAAAACCAAAGAATCA
ATATCGTGTATCATAATGAGAAGAATATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAG
TATGACGATTCATGGTTGTATTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAAA
AAAGCTTTTTTTGTGACAGC
Found at i:1084431 original size:195 final size:193
Alignment explanation
Indices: 1084081--1084432 Score: 456
Period size: 195 Copynumber: 1.8 Consensus size: 193
1084071 AAAAGAATGG
* * * * *
1084081 GGATTGGTATGACTATTCATGTTTGCATTATTTAAGAGTCAAATTTTGATTCTATCAAAATGGTG
1 GGATTAGTATGACAATTCATGTTTGCATTATTTAAGAGACAAACTTTGATTCTATCAAAACGGTG
* * * * * * *
1084146 GAATGAGAAGCTTTTCTTATGACCCTAAAGCTTCAATGTCATGTATCCTAATGAAAGGAATGCAT
66 GAAAGAAAACCATTTCTTATGACCCTAAAGCATCAATGCCATGTATCCCAATGAAAGGAATGCAT
*
1084211 TTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTTAGGGTTCCTAATGCTAAAAATAGTAA
131 TTTTGGTTCCCAATCCTGAAAAGAATGGAGACTGTTTAGGGTTCCTAATGCTAAAAATAGTAA
* ** *
1084274 GGATTAGTATGACAATTCATTTTTGTGTTATTTGAGAGACAAACTTTGATTCTATCAAAAAACGG
1 GGATTAGTATGACAATTCATGTTTGCATTATTTAAGAGACAAACTTTGATTCTATC--AAAACGG
* *
1084339 TGGAAAGAAAACCATTTCTTGTGACACC-AAAGCATCAATGCCATGTGTCCCAATGAAAGGAATG
64 TGGAAAGAAAACCATTTCTTATGAC-CCTAAAGCATCAATGCCATGTATCCCAATGAAAGGAATG
** *
1084403 TGTTCTTT-GTTCTCAATCCTGAAAAGAATG
128 CATT-TTTGGTTCCCAATCCTGAAAAGAATG
1084433 AAAATTGTTA
Statistics
Matches: 133, Mismatches: 22, Indels: 6
0.83 0.14 0.04
Matches are distributed among these distances:
193 48 0.36
195 80 0.60
196 5 0.04
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.34
Consensus pattern (193 bp):
GGATTAGTATGACAATTCATGTTTGCATTATTTAAGAGACAAACTTTGATTCTATCAAAACGGTG
GAAAGAAAACCATTTCTTATGACCCTAAAGCATCAATGCCATGTATCCCAATGAAAGGAATGCAT
TTTTGGTTCCCAATCCTGAAAAGAATGGAGACTGTTTAGGGTTCCTAATGCTAAAAATAGTAA
Found at i:1085271 original size:475 final size:473
Alignment explanation
Indices: 1084274--1091450 Score: 6789
Period size: 475 Copynumber: 15.3 Consensus size: 473
1084264 AAAATAGTAA
** ** * *
1084274 GGATTAGTATGACAATTCATTTTTGTGTTATTTGAGAGACAAACTTTGATTCTATCAAAAAACGG
1 GGATTAGTATGAGTATTCATGGTTGTCTTATTTAAGAGACAAACTTTGATTCTATC-AAAAA---
*** * ** * *
1084339 TGGAAAG--AAAACCATTTCTTGTGACACCAAAGCATCAATGCCATGTGTCCCAATGAAAGGAAT
62 TGGAAAGATAAAAGTTTTTCTT-TGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAAT
* * * * * * * * * *
1084402 GTGTTCTTTGTTCTCAATCCTGAAAAGAATGAAAATTGTTATGACAATTGATTTTTATCATATTT
126 GTATTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGACAATCGATTCTTGTCATATTT
* ** ** * * *
1084467 ACGAAATGAATTTTGATTTTAAGGAAAATAGGTTAAAGATAATATTTTCATGCAAAAGAAAATCA
191 AAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCA
* ** * *
1084532 TAAATATTGTTTATCATAACGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGAT
256 TCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGAT
* * * *
1084597 CCTTGCTAGAATTCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTACAAAAATTGGTGGGA
321 CATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGA
* * * * * *
1084662 AGAAAGCCTTTCTTGCGAAACCAAAG-ATCAATATCGTGTATCCTAATGAGAATACTAAGCTTAT
386 AAAAAGCCTTTCTTTCGAAACCAAAGCATCAATATCGTGTATCCTAAAGAGAAGACTATGTTTAT
*
1084726 GGTGCCTAATCCTGAAAAGAATGG
451 GGTGCCTAATCC-AAAAAGAATGG
* *
1084750 GGATTAGCATGAGTCTTCATGGTTGTCTTATTTAAGAGGA-AAACTTTGATTCTATCAAAAATGG
1 GGATTAGTATGAGTATTCATGGTTGTCTTATTTAAGA-GACAAACTTTGATTCTATCAAAAATGG
* * *
1084814 CAAAGATAAAAGTTTTTCTTTCGACACCAAAACATCAACGTCATGCATCCCAAT-AAGGGGAATG
65 -AAAGATAAAAGTTTTTCTTT-GACACCAAAGCATCAATGTCATGCATCCTAATGAA-GGGAATG
* * * * ** *
1084878 TATTCTTGGTTCCTAATCTTGAAAGGACTGGAGACTGTTCTGACAATTAATTCTTATCATATTTA
127 TATTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGACAATCGATTCTTGTCATATTTA
* * * * * * *
1084943 AGGGATGGACTTTGATTTTATGGGAAATAGGGCAAAGAGAAGATTTCCATGCAGAAGAAAAACAT
192 AGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCAT
* *
1085008 CAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAAAAAATGAATGAAAATC
257 CAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATC
* * * * * *
1085073 CTTACTAGATTCCATGTTTGTCTCATTTGAGGCATGAACCTAGACTTTACAAAATTTGATTGG-A
322 ATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAA
* * * * **
1085137 AAAAGCCTTTCTTTCGAAACCAGATCGTCAATATCATGTATTTTAAAGAGAAGACTATGTTTATG
387 AAAAGCCTTTCTTTCGAAACCAAAGCATCAATATCGTGTATCCTAAAGAGAAGACTATGTTTATG
*
1085202 GTGCCTAATCCAGAAAAAAATGG
452 GTGCCTAATCCA-AAAAGAATGG
* * * *
1085225 GGATTAGTATGATTATTCTTGGTTCTCTTATATAAGAGACAAACTTTGATTCTATCAAAGACAAT
1 GGATTAGTATGAGTATTCATGGTTGTCTTATTTAAGAGACAAACTTTGATTCTATC-AA-A-AAT
* * * * * *
1085290 AG-AA-ATAAAAGATTTTCTTGCGACAGCAAA-CATTAATGTCATGCATCCTAATAAAGGGAATG
63 GGAAAGATAAAAGTTTTTCTT-TGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATG
* * * * *
1085352 TGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGA-TGTTATGACCATCGATCCTCGTCATATTTA
127 TATTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGACAATCGATTCTTGTCATATTTA
* * * * * *
1085416 ATGGTTGAACTTTGATTTTAAGGAAAATAGAGCAAAGAAAAGATTTCCATGCAGAATAAAATCAT
192 AGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCAT
* *
1085481 CATTATCATTTATCCTAATGAGGAGAATGTGTTTATGGTGCCTAATCACAAAATGAATGAAGATC
257 CAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATC
* * * * *
1085546 ATTACTAGAATCCATGTTTGTCTAATTTGAGGCATGAACTTATACTTTGCAAAAATTAGTGGGTA
322 ATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAA
* * ** * *
1085611 GAAAGCCTTTC-TTGGAAAACCAAAGTGTCAATATCGTGTGTCCTTAACGA-AAGGACTATGTTT
387 AAAAGCCTTTCTTTCG-AAACCAAAGCATCAATATCGTGTATCC-TAAAGAGAA-GACTATGTTT
1085674 ATGGTGCCTAATCCTAAAAAGAATGG
449 ATGGTGCCTAATCC-AAAAAGAATGG
** *
1085700 GGATTAGTATGAGCCTTCATGGTTGTCTTATTTAAGAGGA-AAACTTTGATTCTATTAAAAATGG
1 GGATTAGTATGAGTATTCATGGTTGTCTTATTTAAGA-GACAAACTTTGATTCTATCAAAAAT-G
* *
1085764 TGGAA-ATAAAAGTTTTTCTTGCGACACC-AAGCATCAATGTCATGCATCCTAATGAAGGGAATG
64 -GAAAGATAAAAGTTTTTCTT-TGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATG
* * * * * *
1085827 TATTCCTGGTTCCCAATGTTGAAAAGATTAGAGACTGTTATGATAATCGATTCTTGACATATTTA
127 TATTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGACAATCGATTCTTGTCATATTTA
* * * * * * * * *
1085892 AGGGATGAACTTTGATTTTATGGGAAATAGGTCAAAGAAAAGATTTTCAAGCAGAAGAAAAACTT
192 AGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCAT
* * * *
1085957 CAATATCGTTCATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAGAAAATGAATGATGATC
257 CAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATC
* * * *
1086022 ATTATTAGAATCCATGTTTGTCTCATTTGATGCATGAACTTAGACTTTGCAAAAATTGGTGAGAA
322 ATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAA
* * *
1086087 AAAAG-CTTTCTTGCAAAACCAAAGCATCAATATCGTGTAT-CTAAATGAGAAAAACTATGTTTA
387 AAAAGCCTTTCTTTCGAAACCAAAGCATCAATATCGTGTATCCTAAA-GAG-AAGACTATGTTTA
* *
1086150 TGGTGCCTAATGCCAAAAATATTGG
450 TGGTGCCTAAT-CCAAAAAGAATGG
* * * * *
1086175 GGATTAGTTTGACG-ATTC-TTGTATATGTTATTTGAGAGACAAACTTTGATTCTATCAGAAAAC
1 GGATTAGTATGA-GTATTCATGGT-TGTCTTATTTAAGAGACAAACTTTGATTCTATC--AAAA-
*** * * * *
1086238 GATGGAAAG--AAAACCATCTCTTGTCACACCAAAGCATCAATGCCATGTATCCTAATGAAGGG-
61 -ATGGAAAGATAAAAGTTTTTCTT-TGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGA
* * * * * * *
1086300 A---A-TCTT-G------A-----AAAAG-GTGGAGACTATTGTAAGAATCAATGCTTGTCATAT
124 ATGTATTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGACAATCGATTCTTGTCATAT
* * * * * *
1086348 TTGAGGGTTAAATTTTTATTTTAAGGTAAATAGAGG-AAAGAAAAGATTTCCATGCAAAA-ATAA
189 TTAAGGGATGAATTTTGATTTTAAGGAAAATAG-GGCAAAGAAAAGATTTCCATGCAAAAGAAAA
* * ** * *
1086411 TCATCAACATCTTTTATCCTAAAAAGGAGAATGTGTTTATTGTGCCTGATCACAAAATGAATGAA
253 TCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAA
* * * * *
1086476 GATCATTTCGAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAAAAATTGGTG
318 GATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTG
* * * * * *
1086541 GGAAGAAAGCCTTTCTTGT-GAAACCAAAGCATTAATATCATGTATCCTTATGAGAATACTATGT
383 GGAAAAAAGCCTTTCTT-TCGAAACCAAAGCATCAATATCGTGTATCCTAAAGAGAAGACTATGT
* *
1086605 TTATGGTGCGTAATCCTGAAAAG-ATGG
447 TTATGGTGCCTAATCC-AAAAAGAATGG
** * ** * *
1086632 GGATTAGTGCGAGGT-TTCATGGTTGTCTTATTTATGAG-GGAACTTTAATTCTATTAAAAATGG
1 GGATTAGTATGA-GTATTCATGGTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAT-G
* * *
1086695 TGGAA-ATAAAAGTTTTTCTTGCGACACC-AAGCATCAATGTCATGCATCCTATTGAAGGGAATG
64 -GAAAGATAAAAGTTTTTCTT-TGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATG
* * *
1086758 TATTCTTGGTTCCCAATGTTGAAAAGAATGGAGACTGTTATGACAAAT-GATTCATGTCATAATT
127 TATTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAC-AATCGATTCTTGTCATATTT
* * * * * * *
1086822 AAAGGATGAATTTTAATTTTAAGGAAAATAGGGTAAAGGAAACATTTCCA--C----GCAAA-CG
191 AAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCA
* ** * * *
1086880 TCAATATCATTTATCTTAATGAGGAGAATGTGTTTATAAAGCCTAATCTCGAAATGACTGAAGAT
256 TCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGAT
* * * *
1086945 CATTACTAGAATCCATGTTTGTCTCATTTGACGCATGAACTTAGACTCTGCAAAAATTGGTGGGT
321 CATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGA
* * ** * * * *
1087010 AGAAAGCCTTTC-TTGGAAAACCAAAGTGTCAATATCGTGTGTCCTTATGAGAGGACTATGTTTA
386 AAAAAGCCTTTCTTTCG-AAACCAAAGCATCAATATCGTGTATCCTAAAGAGAAGACTATGTTTA
*
1087074 TGGTGCCTAATCCTAAAAAGAATAG
450 TGGTGCCTAATCC-AAAAAGAATGG
* ** *
1087099 GGATTATTATGAGCCTTCATGGTTGTCTTATTTAAGAGGA-AAACTTTGATTCTATAAAAAATGG
1 GGATTAGTATGAGTATTCATGGTTGTCTTATTTAAGA-GACAAACTTTGATTCTATCAAAAAT-G
* * *
1087163 TGGAA-ATAAAAGTTTTTCTTGTGACACCAAAGCATCAATGTAATGCATCCAAATGAAGGGAATG
64 -GAAAGATAAAAGTTTTTCTT-TGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATG
* * * * *
1087227 TATTCTTGGTTCCCAATCATGAAAAGAATGGAGAGTATTATGGCAATTGATTCTTGTCATATTTA
127 TATTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGACAATCGATTCTTGTCATATTTA
* * * * * *
1087292 AGGGATAAACTTTGATTTTATGGGAAATAGGGCAAAGAAAAGATTTCCATGCACAAGAAAAACAT
192 AGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCAT
* * * * * *
1087357 CAATATCGTTTATCCAAATGAAGAGAATGTGTTTGTAGTGCCTAAGCACAAAATGAATGAAAATC
257 CAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATC
* *
1087422 TTTACTAGATTCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGG-A
322 ATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAA
* * * *
1087486 AAAAGCCTTTCTTTCGAAGCCAAATCATCCATATCATGTATCCTAAA-AGGAAGACTACT-TTTA
387 AAAAGCCTTTCTTTCGAAACCAAAGCATCAATATCGTGTATCCTAAAGA-GAAGACTA-TGTTTA
* **
1087549 TGGTGCCTAATCTAGAAAAGAATAA
450 TGGTGCCTAATCCA-AAAAGAATGG
* * * * *
1087574 GGATTAGTATGATTATTCATGATTGTCTTATATAGGAGACAAACTTTGATT-TTTGCAAAAACGG
1 GGATTAGTATGAGTATTCATGGTTGTCTTATTTAAGAGACAAACTTTGATTCTAT-CAAAAA---
* * * * * * *
1087638 TGGAAAG--AAAAGCTTTTCTTGAGACAGCAAA-CCTCAATGCCAGGCATCCTAATGAAGGGAAA
62 TGGAAAGATAAAAGTTTTTCTT-TGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAAT
* * * * * *
1087700 ATGTTCTTGGCTCCCAATCTTGAAAAGAATGGAGACTGTAATGACGATCGATCCTTGTCATATTT
126 GTATTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGACAATCGATTCTTGTCATATTT
* * * * *
1087765 AAGGGATGAATTTTGATTTTAAAGAAAATACGGCAAA-AAAATATTTTCATTCAAAAGAAAATCA
191 AAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCA
* *
1087829 TCATTATCATTTATCCTAATGAGGAGAAGGTGTTTATAGTGCCTAATCACAAAATGAATGAAGAT
256 TCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGAT
* * * * **
1087894 CATTACTAGAATCCATGTTTGTCTCATTTGAGACACGAACTTAGACTTTGCAAAAATTAGCAGGA
321 CATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGA
* * * * * * * *
1087959 AGAAAGCCTTTCTTGT-GAAACCAAAGCGTCCATATCGTGTATTCTTACGAGAAGGCTATGTTCA
386 AAAAAGCCTTTCTT-TCGAAACCAAAGCATCAATATCGTGTATCCTAAAGAGAAGACTATGTTTA
* * *
1088023 TAGTGCCTAATCCTGAAAAGAATAG
450 TGGTGCCTAATCC-AAAAAGAATGG
* * * * *
1088048 GGATTAGTACGAGTCTTCATGGTTGCCTTATTTATGAGGA-AAACTTTGATTCTATCAAAATTGG
1 GGATTAGTATGAGTATTCATGGTTGTCTTATTTAAGA-GACAAACTTTGATTCTATCAAAAAT-G
*
1088112 TGGAA-ATAAAAGTTTTTCTTGTGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATG
64 -GAAAGATAAAAGTTTTTCTT-TGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATG
* * * * *
1088176 TACTCCTCGTTCCCAATCTTGAAAAGAATGGAGGCTGTTATGACAAACGATTCTTGTCATATTTA
127 TATTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGACAATCGATTCTTGTCATATTTA
* * * * *
1088241 AGGGATGAATTGTAATTTTAAGGAAAATAGGGTAAAGAAAACATTTCCATGCAAAAGAAAATCGT
192 AGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCAT
** * * *
1088306 CAATATCATTTATGATAATGAGGAGAATGTGCTTATAATGCCTAATCTCAAAATGAATGAAGATC
257 CAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATC
* * * * * **
1088371 ATTACTAGAATCCATGTTTGTCTTATTGGATGCATAAACTTAGACTATACAATTATTGGTGGGAA
322 ATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAA
* ** * *
1088436 AAAGGTTTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATA-AGAAGACTATGTTTAT
387 AAAAGCCTTTCTTTCGAAACCAAAGCATCAATATCGTGTATCCTAA-AGAGAAGACTATGTTTAT
* * *
1088500 GGTGCCTAATACTAAAAATAGTGG
451 GGTGCCTAAT-CCAAAAAGAATGG
* * * * * *
1088524 GGATTAGTACGA-TGATTCTTGTTTGTGTTATTTTAGAGACAATCTTTGATTCTATCAAAAAACA
1 GGATTAGTATGAGT-ATTCATGGTTGTCTTATTTAAGAGACAAACTTTGATTCTATC--AAAA-A
* * *
1088588 GTGGAAAGA-AAACCAG---TTCTTGTGATACCAAAGCATCAATGCCATGTATCCTAATGACA-G
62 -TGGAAAGATAAA--AGTTTTTCTT-TGACACCAAAGCATCAATGTCATGCATCCTAATGA-AGG
* * *
1088648 GAATGT-TGTCTTAGTTCCCAATCTTGAAAAGAATGGAGATTGTTATGACAATCGATTCTTATCA
122 GAATGTAT-TCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGACAATCGATTCTTGTCA
* *
1088712 TATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAG-ACAGTATTTCCACGCAAAAGA
186 TATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAG-ATTTCCATGCAAAAGA
* * * * * *
1088776 AAAT-GTAAATAACATTTATCATAACGAGGAGAATGTGTTTATAATGCCTAATCACAAAATGAAT
250 AAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
* * * * *
1088840 GAAGATCCTTGCTAGAAAT-CATGTTTGTCTCCTTTGAGGCATGAACTTAAACTTTACAAAAAAT
315 GAAGATCATTACTAG-AATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATT
* * * * * *
1088904 GGCGAGAAAAAAGTCTTTCTTGCGAAACCAAGGCATCAATATCGTGTATCCTAATGAGAAGACTA
379 GGTGGGAAAAAAGCCTTTCTTTCGAAACCAAAGCATCAATATCGTGTATCCTAAAGAGAAGACTA
* *
1088969 TGTTTATGGTGCCTAATCCTGAGAAGAATGG
444 TGTTTATGGTGCCTAATCC-AAAAAGAATGG
* * * * *
1089000 GGATTAGTATAACTCTTCATGGTTGTCTTATTAAAGAGGA-AAACTTTGATTCTATCAAAACTGG
1 GGATTAGTATGAGTATTCATGGTTGTCTTATTTAAGA-GACAAACTTTGATTCTATCAAAAAT-G
* * *
1089064 TGGAA-ATAAAAGTTTTTCTTGCGACACCAAAGCTTCAATGTCATGCATCCTAATGAAGGGAATG
64 -GAAAGATAAAAGTTTTTCTT-TGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATG
* * * *
1089128 TATTCTTGGTTCCCAATCTTGAAAAGAATGGAGAGTATTATGGCAATTGATTCTTGTCATATTTA
127 TATTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGACAATCGATTCTTGTCATATTTA
* * * * * *
1089193 AGGGATAAACTTTGATTTTATGGGAAATAGGGCAAAGAAAAGATTTCCATGCACAAGAAAAACAT
192 AGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCAT
* * * * *
1089258 CAATATCGTTTATCCAAATGAGGAGAATGTGTTTGTAGTGCCTAAGCACAAAATGAATGAAAATC
257 CAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATC
* * *
1089323 TTTACTAGATTCCATGTTTGTCTCATTTGAGGCTTGAACTTAGACTTTACAAAAATTGGTGGG-A
322 ATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAA
* * * * *
1089387 AAAAGCCTTTCTTTC-AAAGCCAAATCATCCATATCATGTATCCTAAAAAGAAGACTACGTTTAT
387 AAAAGCCTTTCTTTCGAAA-CCAAAGCATCAATATCGTGTATCCTAAAGAGAAGACTATGTTTAT
*
1089451 GGTGCCTAATCC---ATG-AT--
451 GGTGCCTAATCCAAAAAGAATGG
* * *
1089468 -GATT-CT-T--G--TT--T-G-TG--TTATTTGAGAGACAAACTTTGATTCGATCCAAAAACGG
1 GGATTAGTATGAGTATTCATGGTTGTCTTATTTAAGAGACAAACTTTGATTCTAT-CAAAAA---
* * *
1089520 TGGAAAG--AAAA-TCATTTCTTGTGACACCAAAGCATCAATGCCATGTATCCTAATGAAGGGAA
62 TGGAAAGATAAAAGT-TTTTCTT-TGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAA
** * ** * ** *
1089582 TGT-TTCTTACTTCCCAATCTTAAAAAGGGTGGAGACTATTACAAGAATCGA-TCTTTGTCATAT
125 TGTATTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGACAATCGATTC-TTGTCATAT
* * * * * *
1089645 TTATGGGTTGAATTTTTATTTTAAGGGGAAATAGAGCAAAGAAAAGATTTCGATGCAAAA-AAAA
189 TTAAGGGATGAATTTTGATTTTAA-GGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
* * * * * *
1089709 TCATTAATATCATTTATCCAAATAAGGAGAATGTGTTTTTTGTACCTAATCACAAAATGAATGAA
253 TCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAA
* * * *
1089774 GATCATTACTGGAATCCACGTGTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTAGTG
318 GATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTG
* * * *
1089839 GGAAAAAAGCCTTTC--TCGCAAACCCAAAGCTTCAATATCGTGTATCCTAATGAAAAGACTACG
383 GGAAAAAAGCCTTTCTTTCG-AAA-CCAAAGCATCAATATCGTGTATCCTAAAGAGAAGACTATG
***
1089902 TTTTATGGTGCCTAATGTTTTAAAA-AATGG
446 -TTTATGGTGCCTAA--TCCAAAAAGAATGG
** * * * *
1089932 GGATTAGTACAACG-ATCCATGTTTGTGTTATTTGAGAGACAAACTTTGATTCTATCAAAAAACG
1 GGATTAGTATGA-GTATTCATGGTTGTCTTATTTAAGAGACAAACTTTGATTCTATC-AAAAA--
* * * * * ** * * *
1089996 GTGGAAAGA-AAACCA-TTTCTC-GTGATACCAAAGCATTAATGCCATTTATCCTAACGAAAGCA
62 -TGGAAAGATAAA--AGTTTTTCTTTGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGA
* * * * * * *
1090058 ATGTGTTCTTAGTTCCCAATCCTGAAAAGAATGGAGATTGTTATGACAATTGATTTTTATCATAT
124 ATGTATTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGACAATCGATTCTTGTCATAT
* * * *
1090123 TTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGATAATATTTTCACGCAAAAGAAAAT
189 TTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAAT
* * *
1090188 CATAAATATCATTTATCATAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAG
254 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
* * * *
1090253 ATCCTTGCTAGAATTCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTACAAAAATTGGTGG
319 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGG
*
1090318 GAAAAAAGCCTTTCTTGT-GAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTT
384 GAAAAAAGCCTTTCTT-TCGAAACCAAAGCATCAATATCGTGTATCCTAAAGAGAAGACTATGTT
* *
1090382 CATGGTGCCTAATCCTAAGAAGAATGG
448 TATGGTGCCTAATCC-AAAAAGAATGG
** * *
1090409 GGATTAGTACAAGTCTTCATGGTTGTCTTATTTAAGAGGA-AAACTTTGATTCTATCAAAACTTG
1 GGATTAGTATGAGTATTCATGGTTGTCTTATTTAAGA-GACAAACTTTGATTCTATCAAAA-ATG
* * ** *
1090473 TGGAA-ATAAAAG-CTTTCTTGTGACACGGAGGCATCAATGTCATGCATCCTAATGAAGGGAATG
64 -GAAAGATAAAAGTTTTTCTT-TGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATG
*
1090536 TATTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTG-T-T----ATC-A-------C------A
127 TATTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGACAATCGATTCTTGTCATATTTA
* * *
1090581 A---A-CAATTTTGATTTTAAGGAAAATAGGGCAATGAAAAAATTTCCATGCAAAAGAAAATCAT
192 AGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCAT
* * * *
1090642 CATTATCATTTATCCTAATGAAGAGAATGTGTTTATAGTACCTAATCACAAAAGGAATGAAGATC
257 CAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATC
* * * * *** *
1090707 CTTGCTAGAATTCATTTTTGTCTCATTTGATTTATGAACTTAGACTTTACAAAAATTTGTGGGAA
322 ATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAA
* * *** * * ** * * *
1090772 AAAAGCCTTTCTTGCCAAACCAAAATGTCAATATCGTGTATCTTTATCAAAAGATTAGGTTTATG
387 AAAAGCCTTTCTTTCGAAACCAAAGCATCAATATCGTGTATCCTAAAGAGAAGACTATGTTTATG
1090837 GTGCCTAATCCTAAAAAGAATGG
452 GTGCCTAATCC-AAAAAGAATGG
* * * * * *
1090860 GGATTGGAATGACTGTTCATGTTTGTC-T-TTTAAGAGATAAACTTTGATTCTATCAAAAATTGT
1 GGATTAGTATGAGTATTCATGGTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA---T
* * * * * * *
1090923 GGAAAG--AAAA-TCTTTTCATATGACCCCAAAGCATTAATGTCATGTATCTTAATGAAAGGAAA
63 GGAAAGATAAAAGT-TTTTC-TTTGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAAT
* * * * ** * * * * *
1090985 GTGTTTTTGGTTCCCAATCTTGAAATGAATGGAGACTATTACAAGAA-CCAGTGCTTGCCTTATT
126 GTATTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGACAATCGA-TTCTTGTCATATT
* * * **
1091049 TCAA-AGATGAATTTTGATTTTATGGAAAATAGGGCAAAGAAAAGATTTGCAACCAAAAGAAAAT
190 T-AAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAAT
* * * * * * * *
1091113 CATCAGTATCATTTATCATATTTAGAAGAATGTGTTTATAGTACTTAATCACAAAATAAATGAAG
254 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
* * **
1091178 ATCCTTAC----A---A----TGTCTCATTTGTGTAATGAACTTAGACTTT-CAAAAATTGGTGG
319 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGG
* * * * *
1091231 GAAAAAAGCCTTTATTGC-AAAGCCATATCATCAATATCATGTATCCTAATA-AGAAGACTATGT
384 GAAAAAAGCCTTTCTTTCGAAA-CCAAAGCATCAATATCGTGTATCCTAA-AGAGAAGACTATGT
* * *
1091294 TTATTGTGCCTAA-CGCTAAAAATATTGG
447 TTATGGTGCCTAATC-C-AAAAAGAATGG
* * *
1091322 GGATTAGTACGACG-ATTCA-GGTT-TCTGTTATTTGAGAGA-AAACTTTGACTCTATCAAAAAA
1 GGATTAGTATGA-GTATTCATGGTTGTC--TTATTTAAGAGACAAACTTTGATTCTATC-AAAAA
*** * **
1091383 CGGTGGAAAG--AAAACCATTTCTTGTGACACCAAAGCATCAATATCATTTATCCTAATG-AGGA
62 ---TGGAAAGATAAAAGTTTTTCTT-TGACACCAAAGCATCAATGTCATGCATCCTAATGAAGG-
1091445 GAATGT
122 GAATGT
1091451 GTTTATTGTG
Statistics
Matches: 5548, Mismatches: 912, Indels: 494
0.80 0.13 0.07
Matches are distributed among these distances:
448 2 0.00
449 31 0.01
450 74 0.01
451 268 0.05
452 3 0.00
453 1 0.00
454 41 0.01
455 226 0.04
456 151 0.03
457 49 0.01
458 155 0.03
459 112 0.02
460 12 0.00
461 10 0.00
462 97 0.02
463 46 0.01
464 65 0.01
465 8 0.00
466 186 0.03
467 40 0.01
468 53 0.01
469 128 0.02
470 5 0.00
471 15 0.00
472 76 0.01
473 356 0.06
474 509 0.09
475 1197 0.22
476 983 0.18
477 373 0.07
478 258 0.05
479 11 0.00
480 6 0.00
481 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (473 bp):
GGATTAGTATGAGTATTCATGGTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGA
AAGATAAAAGTTTTTCTTTGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTATT
CTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGACAATCGATTCTTGTCATATTTAAGGG
ATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAAT
ATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
CTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAA
GCCTTTCTTTCGAAACCAAAGCATCAATATCGTGTATCCTAAAGAGAAGACTATGTTTATGGTGC
CTAATCCAAAAAGAATGG
Found at i:1093037 original size:477 final size:475
Alignment explanation
Indices: 1091418--1096929 Score: 5664
Period size: 477 Copynumber: 11.7 Consensus size: 475
1091408 GACACCAAAG
*
1091418 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATTGTGCCTAATCACAAAATGAATGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
* * * * * *
1091483 ATTATTACTGGAATCCTATGTTTGTCTTATTTGAGGCACGAACTTAGATTTTGCAAAAATTAGTG
66 ATCATTACTAGAATCC-ATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTG
* * ** * *
1091548 GGAAGAAGGCCTTTCTTGTGAAACCAAAGCTTCAATATCGTTTATCCCT-ATGAGAAGACTATGT
130 GGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTAT-CCTAATGAGAAGACTATGT
* * * * *
1091612 TTATGGTGCCAAAT-CTTGAAAAGAATGGGGATTAGTATGAGTCTTCATG---TCTTATTTAAGA
194 TTATGGTGCCTAATCCCT-AAAAAAATGGGGATTAGTATGAGTATTCATGTTTTCTTATTTGAGA
* * * *
1091673 GGA-AAACTTTGATCCTATCAAAAATGGTGGAAATAAAAGT-TTTTCTTGTGACACAAAAGCAGT
258 -GACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAA-TCTTTTCTTGTGACACCAAAGCA-T
* * * * * * **
1091736 CAATGCCTTGCATCCTAATAAAGGAAATGTATTTTTAGTTCCCAATCTTGAAAAGAAAAGAGACT
320 CAATGTCATGCATCCTAATGAAGGGAATGTGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACT
* * * *
1091801 GTTATGACAAACAATTCTTGTCATA-TT------T--A-----ATTTTAAGAAAAATGGGGCAAA
385 GTTATGACAATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAA
*
1091852 GAAAATATTTTCATGCAAAAGAAAAT
450 GAAAAGATTTTCATGCAAAAGAAAAT
* * * *
1091878 CATGAATATCATTTATCATAATGAGGAGAATGTGTTTATAGTGCCTAACCATAAAATGAATGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
*
1091943 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGG
66 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* * * *
1092008 GATAAAAGCCTTACTTGCAAAGCCAAAGCATCAATATCGTGTATCCTAATGAGAAAACTATGTTT
131 GAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTT
* * * *
1092073 ATGGTGCCTAAT-GCTAAAAATAATGGGGATTAGTACGACG-ATTCCTGTTTGTGTTATTTGAGA
196 ATGGTGCCTAATCCCTAAAAA-AATGGGGATTAGTATGA-GTATTCATGTTT-TCTTATTTGAGA
* * * *
1092136 GATAAACTTTTATTCGATCCAAAAACGGTGGAAAGAAAATCATTTCTTGTGACACCAAAGCATCA
258 GACAAACTTTGATTCTAT-CAAAAACGGTGGAAAGAAAATCTTTTCTTGTGACACCAAAGCATCA
* * * * * **
1092201 ATGCCATGTATCCTAATGAAGGGATTGT-TTCTT-GCTTCTCAATCTTAAAAAAGGGTGGAGACT
322 ATGTCATGCATCCTAATGAAGGGAATGTGTTCTTAG-TTCCCAATCTT-GAAAAGAATGGAGACT
* *** * * * * * * *
1092264 ATTGCAAGAATCGATCCTTGTCATATTTACGGGTTGAATTTTTATTTTAAGGGAAATAGAGCAAA
385 GTTATGACAATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAA
*
1092329 GAAAAGATTTCCATGCAAAA-AAAAT
450 GAAAAGATTTTCATGCAAAAGAAAAT
* ** * * *
1092354 CATCAATATCATTTATCCAAACAAGGAGAATGTGTTTTTTGTGCCTAATCACAAAATGAACGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
* * * *
1092419 AACATTACTGGAATCCATTTTTATCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
66 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* * *
1092484 GAAAAAAGTCTTTCTCGCAAAATCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTT
131 GAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTT
*** * * * * *
1092549 ATGGTGCCTAATGTTTAAAAAAATGGGGATTAGTTTAAGGATCCATGTTTTAGTTATTTGAGAGA
196 ATGGTGCCTAATCCCTAAAAAAATGGGGATTAGTATGAGTATTCATGTTTT-CTTATTTGAGAGA
* * * *
1092614 CAAACTTTGATTCTATCAAAAAACGATGGAAAGAAAATCATTTCCTGTGATACCAAAGCATCAAT
260 CAAACTTTGATTCTATC-AAAAACGGTGGAAAGAAAATCTTTTCTTGTGACACCAAAGCATCAAT
* ** * * * *
1092679 GCCATTTATCCTAATGAAAGCAATGTGTTCTTAGTTCCCAATCCTGAAAAGAATGGAGATTGTTA
324 GTCATGCATCCTAATGAAGGGAATGTGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTA
* *
1092744 TGACAATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTCAGGAAAATAGGGCAAAGATA
389 TGACAATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAA
** *
1092809 ATCTTTTCACGCAAAAGAAAAT
454 AGATTTTCATGCAAAAGAAAAT
** * * * * * *
1092831 TGTAAATATCATTTGTCATAACGAGGAGAATGTGTTTATTGTGCCTAATCACAAAATAAATGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
* * * * *
1092896 ATCCTTGCTAGAATTCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTACAAAAATTGGTGG
66 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* * *
1092961 GAAAAAAGCTTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTT
131 GAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTT
* * * * * * *
1093026 ATGGTGCCTAAT-CCTGATAAGAATAGGGATTAGCATGAGTCTTCATGGTTGTCTTATTTAAGAG
196 ATGGTGCCTAATCCCT-AAAAAAATGGGGATTAGTATGAGTATTCAT-GTTTTCTTATTTGAGA-
* * *
1093090 GA-AAACTTTGATTCTATC-AAACCTGGTGGAAATAAAAGT-TTTTCTTGCGACACCAAAGCATC
258 GACAAACTTTGATTCTATCAAAAAC-GGTGGAAAGAAAA-TCTTTTCTTGTGACACCAAAGCATC
* * *
1093152 AATGTCATGCATCCTAATGAAGGGAATGTATTCCTAGTTCCTAATCTTGAAAA-ATAGTGG-GCA
321 AATGTCATGCATCCTAATGAAGGGAATGTGTTCTTAGTTCCCAATCTTGAAAAGA-A-TGGAG-A
* * * * *
1093215 CTGTTATGACAATCGATTTTTGTCATATTTAGGGGATGAATTTTGATTTTACAAG-CAATAGGGA
383 CTGTTATGACAATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTA-AGGAAAATAGGGC
** *
1093279 AAAGAAAAGA-TTTCGATGCGGAAGAAAAA
447 AAAGAAAAGATTTTC-ATGCAAAAGAAAAT
**
1093308 CATCAATATCGCTTATCCTAATGAGGAGAATGTGTTTAT-GATGCCTAATCACAAAATGAATGAA
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAG-TGCCTAATCACAAAATGAATGAA
* * * * * *
1093372 AATCCTTACTAGATTCCATGTTTGTCTCACTTGAGGCATGAACTTAGACTTTACGAAAATTGGTG
65 GATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTG
* * *** * * *
1093437 GG-GAAAAGCCATTCTTTTGAAACCAAATCATCAATA-CATGTA-CCTAAAGAGAAGACTATGTT
130 GGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTT
* * * *
1093499 TATAGTGCCTAAT--CTAGAAAAGAATGGGGATTAGTATGATTATTCGTGGTTGTCTT-TTATGA
195 TATGGTGCCTAATCCCTA-AAAA-AATGGGGATTAGTATGAGTATTCAT-GTTTTCTTATT-TGA
* * * * * * *
1093561 GAGACAAGCTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTCTCGCGACAGCAAA-TATC
256 GAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAATCTTTTCTTGTGACACCAAAGCATC
* * *** *
1093625 AATGTCATGCATCCTAATGAAGAGAATGTGTTCTCAGTTCATTATCTTGTAAAGAATGGAGACTG
321 AATGTCATGCATCCTAATGAAGGGAATGTGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTG
* * * * * *
1093690 TTACGACAATCGATCCATGTCATATTTAAAGGATGAATTTTGATTTTAAAGAAAATAGGGCAAGG
386 TTATGACAATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAG
* *
1093755 AAAAGATTTCCATGCAAAA-TAAAT
451 AAAAGATTTTCATGCAAAAGAAAAT
* * * *
1093779 CATCATTATCATTTATCCTTATGAGGAGAATATGTTCATAGTGCCTAATCACAAAATGAATGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
* * * * * *
1093844 ATCAGTACTAGAATCCTTGTTTGTCTAATTTGAGGCACGAACTTAAACTTTGCAAAAATTGGCGG
66 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* * ** * *
1093909 GTAGAAAGCCTTTCTTGC-AAACCAAAGTGTCAATA-C-TG--------TGAGATGACTATATTT
131 GAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTT
* * * * * *
1093963 ATGGTGCCTAA-CCCTAAAATGAATGGGGATTAGTAT-ACTCTTCATGGTTATCTTATTTTAAAG
196 ATGGTGCCTAATCCCTAAAA-AAATGGGGATTAGTATGAGTATTCAT-GTTTTCTTATTTGAGAG
* * * * * ***
1094026 GCAAATTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTCCTTGCGATGGCAAA-CATCAAT
259 ACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAATCTTTTCTTGTGACACCAAAGCATCAAT
* * * * *
1094090 GTCATGCATCCTAATGAAGGGAATGCGTTCTTGGTTCCCAATCTTAAAAAGAATGGGGACTATTA
324 GTCATGCATCCTAATGAAGGGAATGTGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTA
* * * **
1094155 TGACAATCGATCCTTGTCAT-TTTAAGGAATGAATTTTGATTTTAAGGAAAATAGGGGAATCAAA
389 TGACAATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAA
1094219 AGATTTTCATGC------AAAT
454 AGATTTTCATGCAAAAGAAAAT
** * * * * * *
1094235 CATCGTTATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGTCGAAACACAAAATAAAGGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
* * * * * *
1094300 ATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAATTTAAACGTCACAAAAATTGGCGG
66 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* * * * * * * * *
1094365 CAAGAAAGCCTTTCTTGCAAAACGAAAGCATCAATATCATGCATCCTTATCAGAAGATTGTGTTT
131 GAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTT
* * * *
1094430 ATGGTGCCTAAT-CCTAAAAAGAATGGGGATTGGAATG-GCTGTTCATGTTTGTCTTATTTAAGA
196 ATGGTGCCTAATCCCTAAAAA-AATGGGGATTAGTATGAG-TATTCATGTTT-TCTTATTTGAGA
** * * * *
1094493 GACAAACTTTGATTCTATCAAAAATAGTGGAAAGAGAAGCTTTTCTTATGACCCCAAAGCATCAA
258 GACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAATCTTTTCTTGTGACACCAAAGCATCAA
* * * * * *
1094558 TGTCATGTATCTTAATGAAAGGAATGTGTGT-TT-GTTTCCAATCTT-AAAATGAAAGAAGACTG
323 TGTCATGCATCCTAATGAAGGGAATGTGT-TCTTAGTTCCCAATCTTGAAAA-GAATGGAGACTG
** * * ** * * ** * *
1094620 TTACAAGAATC-AGTGCTTACCTTATTTCATAGATGAATTTTGATTTTACGGAAAATTGGGCAAA
386 TTATGACAATCGA-TTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAA
* **
1094684 GAAAAGATTTCCAACCAAAAGAAAAT
450 GAAAAGATTTTCATGCAAAAGAAAAT
* *
1094710 CATCAATATCATTTATCATAATTAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
* * * * **
1094775 ATCCTTACTAGAACCCATGTTTGTCTTATTTGTGGCATAAACTTAGACTTTACAAAAATTGGTGG
66 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* *
1094840 G-AAAAAGCCTTTCTTGCAAAGCCAAAGCATCAATATCGTGTATCCTAAAGAGAAGACTATGTTT
131 GAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTT
* * * * *
1094904 ATGGTGCCTAAT-GCTAAAAATATAGGGGATTAGTATGACG-ATTCTTGTATGTGTTATTTGAGA
196 ATGGTGCCTAATCCCTAAAAAAAT-GGGGATTAGTATGA-GTATTCATGT-TTTCTTATTTGAGA
* * * ** * *
1094967 GACAAACTTTAATTCTATCTGAAAATGGTTAAAAGAAAACCATTTCTTGTGACACCAAAGCATCA
258 GACAAACTTTGATTCTATC-AAAAACGGTGGAAAGAAAATCTTTTCTTGTGACACCAAAGCATCA
* ** * ** *
1095032 ATGCCATATATCCTAATGAAGGGAATGT-TTCTTGGTTCCCAATCTTGAAAAGGGTGGAGACTAT
322 ATGTCATGCATCCTAATGAAGGGAATGTGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGT
*** * * * * * * *
1095096 TGCAAGAATCGATGCTTGTCATATTTAAGGGTTGAATTTTTATTTCAAGGAAAATTGAGCAAAGA
387 TATGACAATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGA
* *
1095161 AAAGATTTCCACGCAAAA-AAAAT
452 AAAGATTTTCATGCAAAAGAAAAT
* ** * * * *
1095184 CATCAACATTTTTTATCCTAATGAAGAGAATTTGTTTATTGTGCCTCATCACAAAATGAATGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
* * * * *
1095249 ATCATTTCTGGAATCCATGTTTGTCTCATTTGAGGCCCAAACTTAGACTTTGCAAAAAATTGGTG
66 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAC-AAAAATTGGTG
* * * * * *
1095314 GGAAGAAAGCCTTTCTTCCAAAACCAAAGCATTAACATCAGTGTATCCTTATGAGAAGACTAGGT
130 GGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATC-GTGTATCCTAATGAGAAGACTATGT
* * * *
1095379 TTATGGTGCCTAAT-CCTGAAAAGAATGGGGATTAGTATGAGTCTTCAAGGTTGTCTTATTT-AT
194 TTATGGTGCCTAATCCCT-AAAAAAATGGGGATTAGTATGAGTATTC-ATGTTTTCTTATTTGA-
* * * *
1095442 GAGGA-AAACTTTGATTCTATCAAAAATGGTGGAAATAAAAGT-TTTTCTTGCGACACCAAAGCT
256 GA-GACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAA-TCTTTTCTTGTGACACCAAAGCA
* * * *
1095505 TCAATGTCTTGCATCCTAGTGAAGGGAATGTATTCTTGGTTCCCAATCTTGAAAAGAATGGAGAC
319 TCAATGTCATGCATCCTAATGAAGGGAATGTGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGAC
* * * * *
1095570 TATTATGACAATCAATTCTTGTCATATTTAAGGGATGAACTTTGATTTTATGGGAAATAGGGCAA
384 TGTTATGACAATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAA
*
1095635 AGAAAAGATTTTCATGCAAAAGAAAAA
449 AGAAAAGATTTTCATGCAAAAGAAAAT
* * * * *
1095662 CATCAATATCGTTTATCCTAAAGAGGAGAATGTGTTTATAGTGCCTAATCCCAAAATGGATGAAA
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
* * * * *
1095727 ATCTTTACTAGATTCCATGTTTGTCTCATTTGAGGC-CTGAACTTAGACTTCATAAATATTGGTG
66 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAC-GAACTTAGACTTTACAAAAATTGGTG
* * * * * *
1095791 GG-AAAAAGCCTTTGTTTCAAAACCAAATCATCCATATCATGTATCCTAAAGAGAAGACTATGTT
130 GGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTT
* * * * * * * *
1095855 TATGCTGCCTAAT--CAAAAAAAGATTGAGGATTAGTACGATTATTCATGGTTGTCTTATATAAG
195 TATGGTGCCTAATCCCTAAAAAA-A-TGGGGATTAGTATGAGTATTCAT-GTTTTCTTATTTGAG
* * * * * *
1095918 AGACAAACTTTGATTTTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGAGATAGCAAA-CTTCA
257 AGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAATCTTTTCTTGTGACACCAAAGCATCA
* * * *
1095982 ATGCCATGCATCCTAATGAAGGGAAAGTGTTCTTGGCTCCCAATCTTGAAAAGAATGGAGACTGT
322 ATGTCATGCATCCTAATGAAGGGAATGTGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGT
* * * *
1096047 TATGACGATCGATCCTTGTCATATTTAAGGGAGGAATTTTGATTTTAAAGAAAATAGGGCAAA-A
387 TATGACAATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGA
*
1096111 AAAGATTTTCACGCAAAAGAAAAT
452 AAAGATTTTCATGCAAAAGAAAAT
* * * *
1096135 CATCATTATCATTTATCCTAATAAGAAGAAGGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
* * * * **
1096200 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGACGCGAACTTAGACTTTGCAAAAATTAGCCG
66 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* ** * * *
1096265 GAAGAAAGCCTTTCTTGTGAAACCAAAGCATTAATATCGTGTATTCTTATGAGAAGACTATGTTT
131 GAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTT
* * * **
1096330 ATAGTGCCTAAT-CCTAAAAAGAATGGGGATTAGTACGAGTCTTCATGGTTGCCTTATTT-ATGA
196 ATGGTGCCTAATCCCTAAAAA-AATGGGGATTAGTATGAGTATTCAT-GTTTTCTTATTTGA-GA
** * * *
1096393 GGA-AAACTTTGATTCTATCAAAATTGATGGAAATAAAAGT-TTTTCTTGCGACACCAAAGCATC
258 -GACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAA-TCTTTTCTTGTGACACCAAAGCATC
* * *
1096456 AATGTTATGCATCCTAATGAAGGGAATAATGTACTCCTCA-TTCCCAATCTTGAAAAGAATGGAG
321 AATGTCATGCATCCTAATGAAGGGAAT-GTGT--T-CTTAGTTCCCAATCTTGAAAAGAATGGAG
* * * * *** * *
1096520 GCTATTATGACAAACGATTCTTATCATATTTAAGGGATGAATTACAATTTTAAAGAAAATAGGGT
382 ACTGTTATGACAATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGC
* *
1096585 AAAGAAAACATTTCCATGCAAAAGAAAAT
447 AAAGAAAAGATTTTCATGCAAAAGAAAAT
* * * *
1096614 CATCAATATCATTTATCATAATCAGGAGAATGTGTTTATAATGCCTAATCTCAAAATGAATGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
* * ** **
1096679 ATCATTACTAGAATCCATGTTTGTCTCATTGGATGCATAAACTTAGACTTTACAATTATTGGTGG
66 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* *
1096744 GAAAAAGGTCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTT
131 GAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTT
* * ** * *
1096809 ATGGTGCCTAAT-ACTAAAAATAGTGGGGATTAGTGCGA-TGATTCTTGTTTGTGTTATTTGAGA
196 ATGGTGCCTAATCCCTAAAAA-AATGGGGATTAGTATGAGT-ATTCATGTTT-TCTTATTTGAGA
** * * *
1096872 GACAAACTTTGATTCTATCAAAAAAAAGTGGAAAGAAAACCATTTCTTGTGATACCAA
258 GACAAACTTTGATTCTATC-AAAAACGGTGGAAAGAAAATCTTTTCTTGTGACACCAA
1096930 CTGATGAAAA
Statistics
Matches: 4203, Mismatches: 716, Indels: 246
0.81 0.14 0.05
Matches are distributed among these distances:
456 133 0.03
457 14 0.00
458 8 0.00
459 130 0.03
460 75 0.02
461 50 0.01
462 161 0.04
463 120 0.03
464 42 0.01
467 50 0.01
468 96 0.02
469 77 0.02
470 4 0.00
471 132 0.03
472 85 0.02
473 204 0.05
474 595 0.14
475 439 0.10
476 626 0.15
477 673 0.16
478 207 0.05
479 253 0.06
480 29 0.01
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.31
Consensus pattern (475 bp):
CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
GAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTT
ATGGTGCCTAATCCCTAAAAAAATGGGGATTAGTATGAGTATTCATGTTTTCTTATTTGAGAGAC
AAACTTTGATTCTATCAAAAACGGTGGAAAGAAAATCTTTTCTTGTGACACCAAAGCATCAATGT
CATGCATCCTAATGAAGGGAATGTGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTATG
ACAATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAG
ATTTTCATGCAAAAGAAAAT
Found at i:1100134 original size:949 final size:948
Alignment explanation
Indices: 1097623--1101892 Score: 4919
Period size: 948 Copynumber: 4.5 Consensus size: 948
1097613 TGGTTGTCAT
* * * * *
1097623 CACCAACGCATCAATGCCATGTATCCTAACGAAGGGAATGTTTTGTTAGTTCCCAATCTTGAAAA
1 CACCAAAGCATCAATGCCATGTATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATCTTGAAAA
* * * *
1097688 GAATGGAGATTGTTATGACAATCAATTCTTATCATATTTAAGGGATGAATTTTGATTTTAAGGGA
66 GAATGGAGAGTGTTATGACAATTAATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAA
* * * * * * *
1097753 AATAGGGCAAAGATAATATTTCCACGCAAAAG-AAAACGTAAATAACATTTATCATAACGAGGAG
131 AATAGGGCAAAGAAAAGATTTTCACGCAAAAGAAAAACATCAATATCATTTATCATAATGAGGAG
* * * *
1097817 AATGTGTTTATAATGCCTAATCACAAAAAGAATGAAGATCCTTGCTAGAAAT-CATGTTTGTCTC
196 AATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAG-AATCCATGTTTGTCTC
* * ** *
1097881 CTTTGAGGCATGAACTTAAACTTTAC-AAAATTAGCAGGAAAAAAGCCTTTCTTGCGAAACCAAA
260 ATTTGAGGCATGAACTTAGACTTTACAAAAATT-GGTGGGAAAAAGCCTTTCTTGCGAAACCAAA
* * * * *
1097945 GCATCAAAATCGTGTATCCTAATGAGAAGACTATATTTATGGTGCCTAATCCTGAGAAGAATGGG
324 GCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATGAG
* * **
1098010 GATTAGTATAAGTCCTCATGGTTGTCTTATTTAAGAGGAAAACTTTGATTCTATC-AAAACTGGT
389 GATTAGTATGACTATTCATGGTTGTCTTATTTAAGA-GAAAACTTTGATTCTATCAAAAAC-GGT
* * * * *
1098074 GGAAAATAAAAGTTTTTCTTGCAACACCAAAGCTTCAATGTCATGCATCCTAATGAAGGGAATGT
452 GG-AAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGCCATGCATCCTAATGAAGGGAATGT
* * * * * * *
1098139 ATTCTTGGTTCCCAATCTTGAAAAGAGTGGAGAGTATTATGGCAATTGATTCTTGTCACATTTAA
516 -TTCCTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGACAATCGATTCTTGTCATATTTAA
* * * * * *
1098204 GGGATAAACTTTGATTTTATGGGAAATAGGGCAAAGAAAAGATTTCCATGCACAAGAAAAACATC
580 GGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATC
* *
1098269 AATATCGTTTATCCA-AATGAGGAGAATGTGTTTATAGTGCCTAAGCACAAAATGAATGAAAATC
645 AATATCGTTTAT-CATAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATC
* * **
1098333 TTTACTAGATTCCATGTTTGTCTCATTTGAGGCTTGAACTTAGACTTTACAAAAATTGGTGGGAA
709 ATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAA
* * * * * * *
1098398 -AAAGCCTTTCTTTCGAAGCCAAATCATCCATATCATGTATCCTAA-AAGGAAGACTACGTTTAT
774 GAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGA-GAAGACTATGTTTAT
* * * *
1098461 GGTGCCTAATCTAGAAAGGAATAAGGATTAGTATGATTATTCATGATTGTCTTATATAAGAGACA
838 GGTGCCTAATCTA-AAAAGAATGAGGATTAGTATGAGTATTCATGATTGTCTTATTTAAGAGACA
* * * *
1098526 AACTTTGATTTTTTCAAAAACGGTGGAAAGAAAAGCTTTTCTTGAGA
902 AACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGTGA
* * * *
1098573 CAGCAAA-CCTCAATGCCATGCATCCTAATGAAGGGGAAATG--TTCTTGGCTCCCAATCTTGAA
1 CACCAAAGCATCAATGCCATGTATCCTAATGAA-GGG-AATGTATTCTTGGTTCCCAATCTTGAA
* * * * * *
1098635 AAGAATGGAGACTGTAATGACAATCAATCCTTGCCATATTTAAGGGATGAATTTTGATTTTAAAG
64 AAGAATGGAGAGTGTTATGACAATTAATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGG
* * *
1098700 AAAATAGGGCAAA-AAAAGATTTTCACGCAAAAGAAAATCATCATTATCATTTATCCTAATGAGG
129 AAAATAGGGCAAAGAAAAGATTTTCACGCAAAAGAAAAACATCAATATCATTTATCATAATGAGG
* * *
1098764 AGAAGGTGTTTATAGTGCCTAATTACACAATGAATGAAGATCATTACTAGAATCCATGTTTGTCT
194 AGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCT
* * * * * ** *
1098829 CATTGGAGTCACGAACTTAGACTTTGCAAAAATTAGCAGGAAGAAAGCCTTTCTTGTGAAACCAA
259 CATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAA-AAAGCCTTTCTTGCGAAACCAA
* * * * * * *
1098894 AGCGTCCATATCGTGTATTCTTATGAGAAGGCTATGTTTATAGTGCCTAATCCTGAAAAGAAT-A
323 AGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATGA
* * ** * **
1098958 GGGATTAGTATGAGTCTTCATGGTTACCTTATTTATGAGGAAAACTTTGATTCTATCAAAATTGG
388 -GGATTAGTATGACTATTCATGGTTGTCTTATTTAAGA-GAAAACTTTGATTCTATCAAAAACGG
* * *
1099023 TGGAAA-TAAAGTTTTTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGT
451 TGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGCCATGCATCCTAATGAAGGGAATGT
* * * * *
1099087 ACTT-CTCGTTCCCAATCTTGAAAAGAATGGAGGCTGTTATGACAAACGATTCTTGTCATATTTA
516 --TTCCTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGACAATCGATTCTTGTCATATTTA
* * * * *
1099151 AGGGATGAAATATAATTTTAAGGAAAATAGGGTAAAGAAAACATTTCCATGCAAAAGAAAATCAT
579 AGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCAT
* * *
1099216 CAATATCGTTTATCATAATGAGGAAAATGTGTTTATAATGCCTAATCTCAAAATGAATGAAGATC
644 CAATATCGTTTATCATAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATC
* * ** ** *
1099281 ATTACTAGAATCCATGTTTGTCTTATTGGATACATAAACTTAGACTTTACAAATATTGGTGGGAA
709 ATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAA
* * *
1099346 -AAAGGCCTTTCTTGCAAAATCAAAGCATTAATATCGTGTATCCTAATGAGAAG-CTATGTTTAT
774 GAAA-GCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTAT
* * * * * * *
1099409 GGTGCCTAATACTAAAAATAGTGGGGATTAGTACGA-TGATTCTTGTTTGTGTTATTTAAGAGAC
838 GGTGCCTAAT-CTAAAAAGAATGAGGATTAGTATGAGT-ATTCATGATTGTCTTATTTAAGAGAC
* *
1099473 AAACTTTGATTCTATCAAAAAACAGTGGAAAGAAAACCATTTCTTGTGA
901 AAACTTTGATTCTATC-AAAAACAGTGGAAAGAAAAGCTTTTCTTGTGA
*
1099522 CACCAAAGCATCAATGCCATGTATCCTAATGAAGGAAATGTATTCTTGGTTCCCAATCTTGAAAA
1 CACCAAAGCATCAATGCCATGTATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATCTTGAAAA
* * * * * *
1099587 GAATGGAGAGTATTATGGCAATTGATTCTTGTCATATTTAAGGGATAAACTTTGATTTTATGGGA
66 GAATGGAGAGTGTTATGACAATTAATTCTTGTCATATTTAAGGGATGAATTTTGATTTTA-AGGA
* * * * * *
1099652 AATTA-GGCAAAGAAAAGATTTTAATGCACAAGAAAAACATCAATATCGTTTATCCTAATGAGGA
130 AAATAGGGCAAAGAAAAGATTTTCACGCAAAAGAAAAACATCAATATCATTTATCATAATGAGGA
* * **
1099716 GAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAAATCTTTACTAGTTTCCATGTTTGTCTC
195 GAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTC
* * * *
1099781 ATTCGAGGCATGAACTTAGACTTCACAAAAATTGGTGGGAAAAAGCCTTTCTTTCGAAACCAAAT
260 ATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGCCTTTCTTGCGAAACCAAAG
* * * **
1099846 CATCCATATCATGTTTCCTAAACAGAAGACTATG-TTATGGTGCCTAATCCAGAAAAGAATGAGG
325 CATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATGAGG
* * * * *
1099910 ATTAGTATGATTATTCATGGTTATCTTGTATAAGAGACAAACTTTGATTTTATCAAAAACGGTGG
390 ATTAGTATGACTATTCATGGTTGTCTTATTTAAGAGA-AAACTTTGATTCTATCAAAAACGGTGG
* ** * *
1099975 AAAGAAAAGCTTTTCTTGCGATAGGAAA-CTTCAATGCCATGCATCCTAATGAAGGGAAAGTGTT
454 AAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGCCATGCATCCTAATGAAGGGAATGT-TT
* * *
1100039 CCTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGACAATCGATCCTTGTCATATTTAAGGG
518 CCTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGACAATCGATTCTTGTCATATTTAAGGG
* * * * *
1100104 ATGAATTTTGATTTTAAAGAAAATAGGGTAAA-AAAAGATTTTCACGCAAAAGAAAATCATCATT
583 ATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAAT
* * * * *
1100168 ATCATTTATCCTAATGAGGAGAATGTGTTTAGAGTGCCTAATCATAAAATGAATGGAGATCATTA
648 ATCGTTTATCATAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
* * ** *
1100233 CTAGAATCCATGTTTGTCTCATTTGAGCCACGAACCTAGACTTTGTAAAAATTGGTGAGAAGAAA
713 CTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAA
* *** * * *
1100298 GCCTTTCTTGGAAAACCAAATTGTCAATATCGTGTATCCTTATGAGATGACTATGTTTATGGTGC
778 GCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGC
* * * * * * *
1100363 CAAATCCTAAAAAGAGTG-GGAACTAATATGAGTCTTCATGATTGTCTTCTTTAAGAGGCAAACT
843 CTAAT-CTAAAAAGAATGAGG-ATTAGTATGAGTATTCATGATTGTCTTATTTAAGAGACAAACT
* * * *
1100427 TTGATTCTTTCAAAAATAGTGGAAAGAGAAGCTTTTCTTATGA
906 TTGATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGTGA
* * * * * * *
1100470 CCCCAAAGCATCAATGTCATGTAACTTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAT
1 CACCAAAGCATCAATGCCATGTATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATCTTGAAAA
* ** * * * * * * *
1100535 GAATAGAG-GCTGTTACAAGAATCAGTGCTT-TCCTTATTTCA-TGATGAATTTTGATTTTAAGG
66 GAATGGAGAG-TGTTATGACAATTAATTCTTGT-CATATTTAAGGGATGAATTTTGATTTTAAGG
** * * *
1100597 AAAATAGGGCAAAGAAAAGATTTTCAAC-CAAAAGAAAATTATCAGTATAATTTATCATAATTAG
129 AAAATAGGGCAAAGAAAAGATTTTC-ACGCAAAAGAAAAACATCAATATCATTTATCATAATGAG
* * * * * * * *
1100661 AAGAATGTGTTTATAGTGCCTAATCAGATAATAAAGGAAGATCCTTACTAGAATCCGTATTTGTC
193 GAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTC
* *
1100726 TCATTTGAGCCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGGCCTTTCTTGCAAAACCA
258 TCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAA-GCCTTTCTTGCGAAACCA
* * ** *
1100791 AAACATCAATATTGTGTATCCCGATGAGAAGACTATGTTTATGGTGCCTAATGCC-GAAAATAAT
322 AAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT-CCAGAAAAGAAT
* * * * *
1100855 -AGATATTAGTATGACGATTCATGTTTGTGTTATTTAAGAGAAAAACTTTGATTCAATCAAAAAA
386 GAG-GATTAGTATGACTATTCATGGTTGTCTTATTTAAGAG-AAAACTTTGATTCTATC-AAAAA
** * * * * *
1100919 CACTGGAAAGAAAACCATTTCTTGTGACACCAAAGCATCAATGCCATGTATCCCAATGAAGGGAA
448 CGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGCCATGCATCCTAATGAAGGGAA
* * * * * **
1100984 TGTTTCTTGGTTCCCAATCTTGAAAAG-GTGGAGACTATTGCAAGAATCGAAGCTTGTCATATTT
513 TGTTTCCTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGACAATCGATTCTTGTCATATTT
* * * * *
1101048 GAGGGTTGAATTTTTATTTTAAGGAAAATAGAGCAAAGAAAAGATTTCCATGCAAAA-AAATTCA
578 AAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCA
* * *
1101112 TC---ATCTTTTATCCTAATGAGGAGAATGTGTTTATTGTGCCTAATCACAAAATGAATGAAGAT
643 TCAATATCGTTTATCATAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGAT
* * * *
1101174 CATTTCTGGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAAAAATTGGTGGGA
708 CATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGA
*
1101239 AGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTAT
773 AGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTAT
* * * * * *
1101304 GGTGCCTAATCTTGAAAGGAATGAGGATTAGTATGAGTCTTCATGGTTGTCTTATCTATGAGGA-
838 GGTGCCTAATC-TAAAAAGAATGAGGATTAGTATGAGTATTCATGATTGTCTTATTTAAGA-GAC
** * * * **
1101368 AAACTTTGATTCTATCAAAAATGGTGGAAATAGAAGTTTTTCTTGCAA
901 AAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGTGA
* *
1101416 CACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATCTTGAAAA
1 CACCAAAGCATCAATGCCATGTATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATCTTGAAAA
* * * * *
1101481 GAATGGAGATTGTTATGACAAATGATTTTTGTCATATTTAAGGGATGAATTTTAATTTTAAGGAA
66 GAATGGAGAGTGTTATGACAATTAATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAA
*** * * * *
1101546 AATAGCATAAAGAAAATATTTCCATGCAAAA-AAAAATCGTCAATATCATTTATCATAATGAGGA
131 AATAGGGCAAAGAAAAGATTTTCACGCAAAAGAAAAA-CATCAATATCATTTATCATAATGAGGA
* ** *
1101610 GATTGTGTTTATAGTGCCTAATCACAAAATGGTTGAAGATCATTGCTAGAATCCAT-TCTTGTCT
195 GAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT-TTGTCT
* *
1101674 CATTTGAGGCATGAACTT-GACTTTACAAAAATTAGTGGGAAAAAAGCCTTTCTTGCAAAACCAA
259 CATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGG-AAAAAGCCTTTCTTGCGAAACCAA
* * * * *
1101738 AGAATCAATATCGTGTATCATAATGAGAAGACTATGTTTATGGTGTCTAATGCTA-AAAATAATG
323 AGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT-CCAGAAAAGAATG
* * * * *
1101802 GGGATTAGTATGACGATTCATGTTTGTATTATTTGAGAGATAAACTTTGATTCTATCAAAAGACG
387 AGGATTAGTATGACTATTCATGGTTGTCTTATTTAAGAGA-AAACTTTGATTCTATCAAAA-ACG
*
1101867 GTGGAAAGAAAAGCTTTT-TTGTGACA
450 GTGGAAAGAAAAGCTTTTCTTGCGACA
1101893 GCAGGCATGA
Statistics
Matches: 2812, Mismatches: 454, Indels: 113
0.83 0.13 0.03
Matches are distributed among these distances:
945 14 0.00
946 514 0.18
947 306 0.11
948 709 0.25
949 702 0.25
950 388 0.14
951 179 0.06
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (948 bp):
CACCAAAGCATCAATGCCATGTATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATCTTGAAAA
GAATGGAGAGTGTTATGACAATTAATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAA
AATAGGGCAAAGAAAAGATTTTCACGCAAAAGAAAAACATCAATATCATTTATCATAATGAGGAG
AATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCA
TTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGCCTTTCTTGCGAAACCAAAGC
ATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATGAGGA
TTAGTATGACTATTCATGGTTGTCTTATTTAAGAGAAAACTTTGATTCTATCAAAAACGGTGGAA
AGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGCCATGCATCCTAATGAAGGGAATGTTTCCT
GGTTCCCAATCTTGAAAAGAATGGAGACTATTACGACAATCGATTCTTGTCATATTTAAGGGATG
AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
GTTTATCATAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
GAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCC
TTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTA
ATCTAAAAAGAATGAGGATTAGTATGAGTATTCATGATTGTCTTATTTAAGAGACAAACTTTGAT
TCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGTGA
Found at i:1100673 original size:475 final size:475
Alignment explanation
Indices: 1097623--1101892 Score: 4732
Period size: 475 Copynumber: 9.0 Consensus size: 475
1097613 TGGTTGTCAT
* * * * * *
1097623 CACCAACGCATCAATGCCATGTATCCTAACGAAGGGAATGTTTTGTTAGTTCCCAATCTTGAAAA
1 CACCAAAGCATCAATGCCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATCTTGAAAA
* * * *
1097688 GAATGGAGATTGTTATGACAATCA-ATTCTTATCATATTTAAGGGATGAATTTTGATTTTAAGGG
66 GAATGGAGACTGTTACGACAATCAGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGA
* * * * * * * *
1097752 AAATAGGGCAAAGATAATATTTCCACGCAAAAGAAAA-CGTAAATAACATTTATCATAACGAGGA
131 AAATAGGGCAAAGAAAAGATTTTCAAGCAAAAGAAAATCATCAATATCATTTATCATAATGAGGA
* * * *
1097816 GAATGTGTTTATAATGCCTAATCACAAAAAGAATGAAGATCCTTGCTAGAAAT-CATGTTTGTCT
196 GAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAG-AATCCATGTTTGTCT
* * ** *
1097880 CCTTTGAGGCATGAACTTAAACTTTAC-AAAATTAGCAGGAAAAAAGCCTTTCTTGCG-AAACCA
260 CATTTGAGGCATGAACTTAGACTTTACAAAAATT-GGTGGGAAAAAGCCTTTCTTG-GAAAACCA
* * * *
1097943 AAGCATCAAAATCGTGTATCCTAATGAGAAGACTATATTTATGGTGCCTAATCCTGAGAAGAATG
323 AAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAAT-
* ** *
1098008 GGGATTAGTATAAGTCCTCATGGTTGTCTTATTTAAGAGGAAAACTTTGATTCTATC-AAAACTG
387 GGGATTAGTATGAGTATTCATGGTTGTCTTATTTAAGAGAAAAACTTTGATTCTATCAAAAAC-G
* * *
1098072 GTGGAAAATAAAAGTTTTTCTTGCAA
451 GTGG-AAAGAAAAGCTTTTCTTGCGA
* *
1098098 CACCAAAGCTTCAATGTCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATCTTGAAAA
1 CACCAAAGCATCAATGCCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATCTTGAAAA
* * * * * * * * * * *
1098163 GAGTGGAGAGTATTATGGCAAT-TGATTCTTGTCACATTTAAGGGATAAACTTTGATTTTATGGG
66 GAATGGAGACTGTTACGACAATCAGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGA
* * * * *
1098227 AAATAGGGCAAAGAAAAGATTTCCATGCACAAGAAAAACATCAATATCGTTTATCCA-AATGAGG
131 AAATAGGGCAAAGAAAAGATTTTCAAGCAAAAGAAAATCATCAATATCATTTAT-CATAATGAGG
* * * *
1098291 AGAATGTGTTTATAGTGCCTAAGCACAAAATGAATGAAAATCTTTACTAGATTCCATGTTTGTCT
195 AGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCT
* * *
1098356 CATTTGAGGCTTGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGCCTTTCTTTCG-AAGCCAA
260 CATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGCCTTTC-TTGGAAAACCAA
* * * * * *
1098420 ATCATCCATATCATGTATCCTAA-AAGGAAGACTACGTTTATGGTGCCTAAT-CTAGAAAGGAAT
324 AGCATCAATATCGTGTATCCTAATGA-GAAGACTATGTTTATGGTGCCTAATCCTA-AAAAGAAT
* * * * * * *
1098483 AAGGATTAGTATGATTATTCATGATTGTCTTATATAAGAGACAAACTTTGATTTTTTCAAAAACG
387 -GGGATTAGTATGAGTATTCATGGTTGTCTTATTTAAGAGAAAAACTTTGATTCTATCAAAAACG
*
1098548 GTGGAAAGAAAAGCTTTTCTTGAGA
451 GTGGAAAGAAAAGCTTTTCTTGCGA
* * *
1098573 CAGCAAA-CCTCAATGCCATGCATCCTAATGAAGGGGAAATG--TTCTTGGCTCCCAATCTTGAA
1 CACCAAAGCATCAATGCCATGCATCCTAATGAA-GGG-AATGTATTCTTGGTTCCCAATCTTGAA
* * * * *
1098635 AAGAATGGAGACTGTAATGACAATCA-ATCCTTGCCATATTTAAGGGATGAATTTTGATTTTAAA
64 AAGAATGGAGACTGTTACGACAATCAGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAG
* * *
1098699 GAAAATAGGGCAAA-AAAAGATTTTCACGCAAAAGAAAATCATCATTATCATTTATCCTAATGAG
129 GAAAATAGGGCAAAGAAAAGATTTTCAAGCAAAAGAAAATCATCAATATCATTTATCATAATGAG
* * *
1098763 GAGAAGGTGTTTATAGTGCCTAATTACACAATGAATGAAGATCATTACTAGAATCCATGTTTGTC
194 GAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTC
* * * * * **
1098828 TCATTGGAGTCACGAACTTAGACTTTGCAAAAATTAGCAGGAAGAAAGCCTTTCTTGTG-AAACC
259 TCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAA-AAAGCCTTTCTTG-GAAAACC
* * * * * * *
1098892 AAAGCGTCCATATCGTGTATTCTTATGAGAAGGCTATGTTTATAGTGCCTAATCCTGAAAAGAAT
322 AAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAAT
* ** * * **
1098957 AGGGATTAGTATGAGTCTTCATGGTTACCTTATTTATGAGGAAAACTTTGATTCTATCAAAATTG
387 -GGGATTAGTATGAGTATTCATGGTTGTCTTATTTAAGAGAAAAACTTTGATTCTATCAAAAACG
* *
1099022 GTGGAAA-TAAAGTTTTTCTTGCGA
451 GTGGAAAGAAAAGCTTTTCTTGCGA
* *
1099046 CACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTACTTC-TCGTTCCCAATCTTGAAA
1 CACCAAAGCATCAATGCCATGCATCCTAATGAAGGGAATGTA-TTCTTGGTTCCCAATCTTGAAA
* * * * * *
1099110 AGAATGGAGGCTGTTATGACAAAC-GATTCTTGTCATATTTAAGGGATGAAATATAATTTTAAGG
65 AGAATGGAGACTGTTACGACAATCAGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGG
* * * * *
1099174 AAAATAGGGTAAAGAAAACATTTCCATGCAAAAGAAAATCATCAATATCGTTTATCATAATGAGG
130 AAAATAGGGCAAAGAAAAGATTTTCAAGCAAAAGAAAATCATCAATATCATTTATCATAATGAGG
* * *
1099239 AAAATGTGTTTATAATGCCTAATCTCAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCT
195 AGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCT
* * ** * * * *
1099304 TATTGGATACATAAACTTAGACTTTACAAATATTGGTGGGAAAAAGGCCTTTCTTGCAAAATCAA
260 CATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAA-GCCTTTCTTGGAAAACCAA
* * * *
1099369 AGCATTAATATCGTGTATCCTAATGAGAAG-CTATGTTTATGGTGCCTAATACTAAAAATAGTGG
324 AGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAAT-G
* * * * * *
1099433 GGATTAGTACGA-TGATTCTTGTTTGTGTTATTTAAGAGACAAACTTTGATTCTATCAAAAAACA
388 GGATTAGTATGAGT-ATTCATGGTTGTCTTATTTAAGAGAAAAACTTTGATTCTATC-AAAAACG
* * *
1099497 GTGGAAAGAAAACCATTTCTTGTGA
451 GTGGAAAGAAAAGCTTTTCTTGCGA
* *
1099522 CACCAAAGCATCAATGCCATGTATCCTAATGAAGGAAATGTATTCTTGGTTCCCAATCTTGAAAA
1 CACCAAAGCATCAATGCCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATCTTGAAAA
* * * * * * * *
1099587 GAATGGAGAGTATTATGGCAAT-TGATTCTTGTCATATTTAAGGGATAAACTTTGATTTTATGGG
66 GAATGGAGACTGTTACGACAATCAGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTA-AGG
* * * * *
1099651 AAATTA-GGCAAAGAAAAGATTTT-AATGCACAAGAAAAACATCAATATCGTTTATCCTAATGAG
130 AAAATAGGGCAAAGAAAAGATTTTCAA-GCAAAAGAAAATCATCAATATCATTTATCATAATGAG
* * **
1099714 GAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAAATCTTTACTAGTTTCCATGTTTGTC
194 GAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTC
* * *
1099779 TCATTCGAGGCATGAACTTAGACTTCACAAAAATTGGTGGGAAAAAGCCTTTCTTTCG-AAACCA
259 TCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGCCTTTC-TTGGAAAACCA
* * * * **
1099843 AATCATCCATATCATGTTTCCTAAACAGAAGACTATG-TTATGGTGCCTAATCC-AGAAAAGAAT
323 AAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTA-AAAAGAAT
* * * * * *
1099906 GAGGATTAGTATGATTATTCATGGTTATCTTGTATAAGAGACAAACTTTGATTTTATCAAAAACG
387 G-GGATTAGTATGAGTATTCATGGTTGTCTTATTTAAGAGAAAAACTTTGATTCTATCAAAAACG
1099971 GTGGAAAGAAAAGCTTTTCTTGCGA
451 GTGGAAAGAAAAGCTTTTCTTGCGA
* ** * * * * *
1099996 TAGGAAA-CTTCAATGCCATGCATCCTAATGAAGGGAAAGTGTTCCTAGTTCCCAATCTTGAAAA
1 CACCAAAGCATCAATGCCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATCTTGAAAA
* *
1100060 GAATGGAGACTGTTACGACAATC-GATCCTTGTCATATTTAAGGGATGAATTTTGATTTTAAAGA
66 GAATGGAGACTGTTACGACAATCAGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGA
* * * *
1100124 AAATAGGGTAAA-AAAAGATTTTCACGCAAAAGAAAATCATCATTATCATTTATCCTAATGAGGA
131 AAATAGGGCAAAGAAAAGATTTTCAAGCAAAAGAAAATCATCAATATCATTTATCATAATGAGGA
* * *
1100188 GAATGTGTTTAGAGTGCCTAATCATAAAATGAATGGAGATCATTACTAGAATCCATGTTTGTCTC
196 GAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTC
* * * ** *
1100253 ATTTGAGCCACGAACCTAGACTTTGTAAAAATTGGTGAGAAGAAAGCCTTTCTTGGAAAACCAAA
261 ATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAA-AAAGCCTTTCTTGGAAAACCAAA
*** * * * *
1100318 TTGTCAATATCGTGTATCCTTATGAGATGACTATGTTTATGGTGCCAAATCCTAAAAAGAGTGGG
325 GCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGG
* * * * * ** * **
1100383 AACTAATATGAGTCTTCATGATTGTCTTCTTTAAGAGGCAAACTTTGATTCTTTCAAAAATAGTG
390 -ATTAGTATGAGTATTCATGGTTGTCTTATTTAAGAGAAAAACTTTGATTCTATCAAAAACGGTG
* **
1100448 GAAAGAGAAGCTTTTCTTATGA
454 GAAAGAAAAGCTTTTCTTGCGA
* * * * * * * *
1100470 CCCCAAAGCATCAATGTCATGTAACTTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAT
1 CACCAAAGCATCAATGCCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATCTTGAAAA
* * * * * * * *
1100535 GAATAGAGGCTGTTACAAGAATCAG-TGCTT-TCCTTATTTCA-TGATGAATTTTGATTTTAAGG
66 GAATGGAGACTGTTACGACAATCAGATTCTTGT-CATATTTAAGGGATGAATTTTGATTTTAAGG
* * * * * *
1100597 AAAATAGGGCAAAGAAAAGATTTTCAACCAAAAGAAAATTATCAGTATAATTTATCATAATTAGA
130 AAAATAGGGCAAAGAAAAGATTTTCAAGCAAAAGAAAATCATCAATATCATTTATCATAATGAGG
* * * * * * *
1100662 AGAATGTGTTTATAGTGCCTAATCAGATAATAAAGGAAGATCCTTACTAGAATCCGTATTTGTCT
195 AGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCT
* *
1100727 CATTTGAGCCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGGCCTTTCTTGCAAAACCAA
260 CATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAA-GCCTTTCTTGGAAAACCAA
* * ** * *
1100792 AACATCAATATTGTGTATCCCGATGAGAAGACTATGTTTATGGTGCCTAATGCC-GAAAATAATA
324 AGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT-CCTAAAAAGAAT-
** * * *
1100856 GATATTAGTATGACG-ATTCATGTTTGTGTTATTTAAGAGAAAAACTTTGATTCAATCAAAAAAC
387 GGGATTAGTATGA-GTATTCATGGTTGTCTTATTTAAGAGAAAAACTTTGATTCTATC-AAAAAC
** * * *
1100920 ACTGGAAAGAAAACCATTTCTTGTGA
450 GGTGGAAAGAAAAGCTTTTCTTGCGA
* *
1100946 CACCAAAGCATCAATGCCATGTATCCCAATGAAGGGAATGT-TTCTTGGTTCCCAATCTTGAAAA
1 CACCAAAGCATCAATGCCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATCTTGAAAA
* * * * * ** * * *
1101010 G-GTGGAGACTATTGCAAGAATC-GAAGCTTGTCATATTTGAGGGTTGAATTTTTATTTTAAGGA
66 GAATGGAGACTGTTACGACAATCAGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGA
* * * * * *
1101073 AAATAGAGCAAAGAAAAGATTTCCATGCAAAA-AAATTCATC---ATCTTTTATCCTAATGAGGA
131 AAATAGGGCAAAGAAAAGATTTTCAAGCAAAAGAAAATCATCAATATCATTTATCATAATGAGGA
* * * *
1101134 GAATGTGTTTATTGTGCCTAATCACAAAATGAATGAAGATCATTTCTGGAATCAATGTTTGTCTC
196 GAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTC
* * *
1101199 ATTTGAGGCACGAACTTAGACTTTGCAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAA
261 ATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAA-AAAGCCTTTCTTGGAAAACCAAA
* * * * *
1101264 GCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAGGAATGAG
325 GCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATG-G
* * * * *
1101329 GATTAGTATGAGTCTTCATGGTTGTCTTATCTATGAGGAAAACTTTGATTCTATCAAAAATGGTG
389 GATTAGTATGAGTATTCATGGTTGTCTTATTTAAGAGAAAAACTTTGATTCTATCAAAAACGGTG
* * * *
1101394 GAAATAGAAGTTTTTCTTGCAA
454 GAAAGAAAAGCTTTTCTTGCGA
*
1101416 CACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATCTTGAAAA
1 CACCAAAGCATCAATGCCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATCTTGAAAA
* * * *
1101481 GAATGGAGATTGTTATGACAA--ATGATTTTTGTCATATTTAAGGGATGAATTTTAATTTTAAGG
66 GAATGGAGACTGTTACGACAATCA-GATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGG
*** * * * * *
1101544 AAAATAGCATAAAGAAAATATTTCCATGCAAAAAAAAATCGTCAATATCATTTATCATAATGAGG
130 AAAATAGGGCAAAGAAAAGATTTTCAAGCAAAAGAAAATCATCAATATCATTTATCATAATGAGG
* ** *
1101609 AGATTGTGTTTATAGTGCCTAATCACAAAATGGTTGAAGATCATTGCTAGAATCCAT-TCTTGTC
195 AGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT-TTGTC
* *
1101673 TCATTTGAGGCATGAACTT-GACTTTACAAAAATTAGTGGGAAAAAAGCCTTTCTTGCAAAACCA
259 TCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGG-AAAAAGCCTTTCTTGGAAAACCA
* * * * *
1101737 AAGAATCAATATCGTGTATCATAATGAGAAGACTATGTTTATGGTGTCTAATGCTAAAAATAATG
323 AAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAAT-
* * * *
1101802 GGGATTAGTATGACG-ATTCATGTTTGTATTATTTGAGAGATAAACTTTGATTCTATCAAAAGAC
387 GGGATTAGTATGA-GTATTCATGGTTGTCTTATTTAAGAGAAAAACTTTGATTCTATCAAAA-AC
*
1101866 GGTGGAAAGAAAAGCTTTT-TTGTGA
450 GGTGGAAAGAAAAGCTTTTCTTGCGA
1101891 CA
1 CA
1101893 GCAGGCATGA
Statistics
Matches: 3181, Mismatches: 540, Indels: 148
0.82 0.14 0.04
Matches are distributed among these distances:
470 63 0.02
471 248 0.08
472 228 0.07
473 322 0.10
474 607 0.19
475 1019 0.32
476 672 0.21
477 22 0.01
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (475 bp):
CACCAAAGCATCAATGCCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATCTTGAAAA
GAATGGAGACTGTTACGACAATCAGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGA
AAATAGGGCAAAGAAAAGATTTTCAAGCAAAAGAAAATCATCAATATCATTTATCATAATGAGGA
GAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTC
ATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGCCTTTCTTGGAAAACCAAAG
CATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGA
TTAGTATGAGTATTCATGGTTGTCTTATTTAAGAGAAAAACTTTGATTCTATCAAAAACGGTGGA
AAGAAAAGCTTTTCTTGCGA
Found at i:1102768 original size:669 final size:663
Alignment explanation
Indices: 1101255--1103200 Score: 2076
Period size: 669 Copynumber: 2.9 Consensus size: 663
1101245 CCTTTCTTGC
** ** * * * *
1101255 AAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTA-TGTTTATGG-TGCCTAATCTTG
1 AAAACCAAAGTGTCAATATTGTGTATCCTTATGAGATGAC-ACCGTTTA-GGTTGCCTAATCCTA
* * * * *
1101318 AAAGGAATGAGGATTAGTATGAGTCTTCATGGTTGTCTTATCTATGAGGA-AAACTTTGATTCTA
64 AAAAGAATAAGGATTAGTATGAGTATTCATGGTTGTCTTATTTAAGA-GACAAACTTTGATTCTA
* * * * * * *
1101382 TCAAAAATGGTGGAAATAGAAGTTTTTCTTGCAACACCAAAGCATCAATGTCATGCATCCTAATG
128 TCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGCCATGCATCCTAATA
* *
1101447 AAGGGAATGTATTCTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTATGACAAATGATTTTTG
193 AAGGGAATGTGTTCTTGGTTCTCAATCTTGAAAAGAAT-GAGATTGTTATGAC-AATGATTTTTG
* * * *
1101512 TCATATTTAAGGGATGAATTTTAATTTTAAGGAAAATAGCATAAAGAAAATATTTCCATGCAAAA
256 TCATATTTAAGGAATGAATTTTGATTTTAAGGAAAATAGGATAAAGAAAATATTTTCATGCAAAA
* * * * *
1101577 AAAAATCGTCAATATCATTTATCATAATGAGGAGATTGTGTTTATAGTGCCTAATCACAAAATGG
321 GAAAATCATCAATATCATTTATCATAATGAGGAGAATGTCTTTATAGTGCCTAATCACAAAATGA
* **
1101642 TTGAAGATCATTGCTAGAATCCAT-TCTTGTCTCATTTGAGGCATGAACTT-GACTTTACAAAAA
386 ATGAAGATCATTGCTAGAATCCATGT-TTGTCTCATAAGA-GCATGAACTTAGACTTTACAAAAA
* * *
1101705 TTAGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGAATCAATATCGTGTATCATAATGAGAAGAC
449 TTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAG-ATCAATATCGTGTATCCTAATGAGAAGAC
* * * * *
1101770 TATGTTTATGGTGTCTAATGCTAAAAATAATGGGGATTAGTATGACGATTCATGTTTGTATTATT
513 TATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATT-GTATGACTATTCATGTTTGCATTATT
* * * *
1101835 TGAGAGATAAACTTTGATTCTATCAAAAGACGGTGGAAAGAAAAGCTTTTTTGTGACAGCAGGCA
577 TAAGAG-TAAACTTTGATTCTATC-AAA-ACGGTGGAAAGAAAAGCTTTTTTATGACACCAAGCA
* *
1101900 TGAACTTAGAGTTTGCAAAAATTGG
639 TCAACTTAGAGTATGCAAAAATTGG
*** * *
1101925 AAAACCAAAGTGTCAATATTGTGTATCCTTATGAGATGACTTTGTTTATGTTGCCTAATCCTACA
1 AAAACCAAAGTGTCAATATTGTGTATCCTTATGAGATGACACCGTTTAGGTTGCCTAATCCTAAA
** * * *
1101990 AAGAATGGGGATTAGTATGAGTCTTCATGGTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCC
66 AAGAATAAGGATTAGTATGAGTATTCATGGTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
* * * *
1102055 AAAACGGTGGAAAGAAAAGCTTTTCTTGCGATAGCAAA-CATCAATGCCACGCATGCTAATAAAG
131 AAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGCCATGCATCCTAATAAAG
* * * **
1102119 GGAATGTGTTCTTGGTTCTCAAAT-TTGAAAAGAATAGAGACTGTTACGACAATCAATCCTTGTC
196 GGAATGTGTTCTTGGTTCTC-AATCTTGAAAAGAAT-GAGATTGTTATGACAAT-GATTTTTGTC
** * *
1102183 ATATTTAAGGAATGAATTTTGATTTTAA-GAAAATAGGGCAATGAAAAGATTTTCATGCAAAAGA
258 ATATTTAAGGAATGAATTTTGATTTTAAGGAAAATAGGATAAAGAAAATATTTTCATGCAAAAGA
* * * * * * *
1102247 AAATCATCATTATTATTTATCCTAATGAGGAGAATGTCTTTATAGTGTCTAAACAAAAAATGAAG
323 AAATCATCAATATCATTTATCATAATGAGGAGAATGTCTTTATAGTGCCTAATCACAAAATGAAT
* * * *
1102312 GAAGATCATTACTAGAATCCATGTTTGTCTCATAAGATGCACGAACTTAGACTTTGCAGAAATTG
388 GAAGATCATTGCTAGAATCCATGTTTGTCTCATAAGA-GCATGAACTTAGACTTTACAAAAATTG
* * * * *
1102377 GTGGGAAGAAAGCCTTTTTTGCAAAACGAAAGTCTCAATATCGTGTATCCTTATGAGAAGACTCT
452 GTGGGAAGAAAGCCTTTCTTGCAAAACCAAAG-ATCAATATCGTGTATCCTAATGAGAAGACTAT
1102442 GTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTGGTATGACTATTCATGTTTGCATTATTTAA
516 GTTTATGGTGCCTAATCCTAAAAAGAATGGGGATT-GTATGACTATTCATGTTTGCATTATTTAA
* * * * *
1102507 GAGTCAAATTTTGATTCTATCAAAATGGTGGAATGAGAAGCTTTTCTTATGAC-CCTAAAGCTTC
580 GAGT-AAACTTTGATTCTATCAAAACGGTGGAAAGAAAAGCTTTT-TTATGACACC--AAGCATC
* **
1102571 AA-TGTCA-TGTAT-C-CTAA-T-G
641 AACT-T-AGAGTATGCAAAAATTGG
** * * *
1102590 -AAA-GGAA-TG-CATTTTTG-GT-TCCCAATCT-TGAAAAGAATGGAGACCGTTTAGGGTT-CC
1 AAAACCAAAGTGTCAATATTGTGTAT-CC--T-TATG---AG-AT-GACACCGTTTA-GGTTGCC
* * ** * *
1102647 TAATGCTAAAAATAATAAGGATTAGTATGACG-ATTCATTTTTGTGTTATTTGAGAGACAAACTT
56 TAATCCTAAAAAGAATAAGGATTAGTATGA-GTATTCATGGTTGTCTTATTTAAGAGACAAACTT
* * * * *
1102711 TGATTCTATCAAAAAACAGTGGAAAGAAAACCATTTCTTGTGACACCAAAGCATCAATGCCATGT
120 TGATTCTATC-AAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGCCATGC
* * * *
1102776 ATCCCAATGAAA-GGAATGTGTTCTTTGTTCTCAATCCTGAAAAGAATGAAAATTGTTATGACAA
184 ATCCTAAT-AAAGGGAATGTGTTCTTGGTTCTCAATCTTGAAAAGAATG-AGATTGTTATGACAA
* * * * *
1102840 TTGATTTTTATCATATTTACGAAATGAATTTTGATTTTAAGGAAAATAGGTTAAAGATAATATTT
247 -TGATTTTTGTCATATTTAAGGAATGAATTTTGATTTTAAGGAAAATAGGATAAAGAAAATATTT
* * *
1102905 TCATGCAAAAGAAAATCATAAATATCATTTATCATAACGAAGAGAATGTGC-TTATAGTGCCTAA
311 TCATGCAAAAGAAAATCATCAATATCATTTATCATAATGAGGAGAATGT-CTTTATAGTGCCTAA
* *
1102969 TCACAAAATGAATGAAGATCCTTGCTAGAATTCATGTTTGTCTCATTTAAG-GCATGAACTTAGA
375 TCACAAAATGAATGAAGATCATTGCTAGAATCCATGTTTGTCTCA--TAAGAGCATGAACTTAGA
*
1103033 CTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGATCAATATCGTGTATCCTA
438 CTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGATCAATATCGTGTATCCTA
* * * * * * * *
1103098 ATGAGAAGACTAAGCTTATGGTGCCTAATCCTGAAAAGAATGGGGTAATGCATGAGTCTTCATGG
503 ATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGG-ATTGTATGACTATTCATGT
*
1103163 TTGTC-TTATTTAAGAGGAAAACTTTGATTCTATCAAAA
567 TTG-CATTATTTAAGA-GTAAACTTTGATTCTATCAAAA
1103201 ATGGCAAAAA
Statistics
Matches: 1068, Mismatches: 171, Indels: 75
0.81 0.13 0.06
Matches are distributed among these distances:
659 1 0.00
660 4 0.00
661 6 0.01
662 5 0.00
663 3 0.00
664 3 0.00
665 3 0.00
666 3 0.00
667 91 0.09
668 178 0.17
669 448 0.42
670 318 0.30
671 1 0.00
672 4 0.00
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (663 bp):
AAAACCAAAGTGTCAATATTGTGTATCCTTATGAGATGACACCGTTTAGGTTGCCTAATCCTAAA
AAGAATAAGGATTAGTATGAGTATTCATGGTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
AAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGCCATGCATCCTAATAAAG
GGAATGTGTTCTTGGTTCTCAATCTTGAAAAGAATGAGATTGTTATGACAATGATTTTTGTCATA
TTTAAGGAATGAATTTTGATTTTAAGGAAAATAGGATAAAGAAAATATTTTCATGCAAAAGAAAA
TCATCAATATCATTTATCATAATGAGGAGAATGTCTTTATAGTGCCTAATCACAAAATGAATGAA
GATCATTGCTAGAATCCATGTTTGTCTCATAAGAGCATGAACTTAGACTTTACAAAAATTGGTGG
GAAGAAAGCCTTTCTTGCAAAACCAAAGATCAATATCGTGTATCCTAATGAGAAGACTATGTTTA
TGGTGCCTAATCCTAAAAAGAATGGGGATTGTATGACTATTCATGTTTGCATTATTTAAGAGTAA
ACTTTGATTCTATCAAAACGGTGGAAAGAAAAGCTTTTTTATGACACCAAGCATCAACTTAGAGT
ATGCAAAAATTGG
Found at i:1102820 original size:195 final size:193
Alignment explanation
Indices: 1102442--1102823 Score: 462
Period size: 195 Copynumber: 2.0 Consensus size: 193
1102432 AGAAGACTCT
* ** * *
1102442 GTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTGGTATGACTATTCATGTTTGCATTATTTAA
1 GTTTAGGGTGCCTAATCCTAAAAAGAATAAGGATTAGTATGACGATTCATGTTTGCATTATTTAA
* * ** * * * * *
1102507 GAGTCAAATTTTGATTCTATCAAAATGGTGGAATGAGAAGCTTTTCTTATGACCCTAAAGCTTCA
66 GAGACAAACTTTGATTCTATCAAAACAGTGGAAAGAAAACCATTTCTTATGACCCTAAAGCATCA
* * *
1102572 ATGTCATGTATCCTAATGAAAGGAATGCATTTTTGGTTCCCAATCTTGAAAAGAATGGAGACC
131 ATGCCATGTATCCCAATGAAAGGAATGCATTTTTGGTTCCCAATCCTGAAAAGAATGGAGACC
* * * * ** *
1102635 GTTTAGGGTTCCTAATGCTAAAAATAATAAGGATTAGTATGACGATTCATTTTTGTGTTATTTGA
1 GTTTAGGGTGCCTAATCCTAAAAAGAATAAGGATTAGTATGACGATTCATGTTTGCATTATTTAA
*
1102700 GAGACAAACTTTGATTCTATCAAAAAACAGTGGAAAGAAAACCATTTCTTGTGACACC-AAAGCA
66 GAGACAAACTTTGATTCTATC--AAAACAGTGGAAAGAAAACCATTTCTTATGAC-CCTAAAGCA
** *
1102764 TCAATGCCATGTATCCCAATGAAAGGAATGTGTTCTTT-GTTCTCAATCCTGAAAAGAATG
128 TCAATGCCATGTATCCCAATGAAAGGAATGCATT-TTTGGTTCCCAATCCTGAAAAGAATG
1102824 AAAATTGTTA
Statistics
Matches: 157, Mismatches: 28, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
193 72 0.46
195 80 0.51
196 5 0.03
ACGTcount: A:0.34, C:0.14, G:0.19, T:0.33
Consensus pattern (193 bp):
GTTTAGGGTGCCTAATCCTAAAAAGAATAAGGATTAGTATGACGATTCATGTTTGCATTATTTAA
GAGACAAACTTTGATTCTATCAAAACAGTGGAAAGAAAACCATTTCTTATGACCCTAAAGCATCA
ATGCCATGTATCCCAATGAAAGGAATGCATTTTTGGTTCCCAATCCTGAAAAGAATGGAGACC
Found at i:1103397 original size:669 final size:666
Alignment explanation
Indices: 1102055--1103303 Score: 1433
Period size: 670 Copynumber: 1.9 Consensus size: 666
1102045 GATTCTATCC
* * * * * * *
1102055 AAAACGGTGGAAAGAAAAGCTTTTCTTGCGATAGCAAACATCAATGCCACGCATGCTAATAAAGG
1 AAAACAGTGGAAAGAAAACCATTTCTTGCGACACCAAACATCAATGCCACGCATCCCAATAAAGG
* * *
1102120 GAATGTGTTCTTGGTTCTCAAATTTGAAAAGAATAGAGACTGTTACGACAATCAATCCTTGTCAT
66 GAATGTGTTCTTGGTTCTCAAATCTGAAAAGAATAGAAACTGTTACGACAATCAATCCTTATCAT
* *
1102185 ATTTAAGGAATGAATTTTGATTTTAAGAAAATAGGGCAATGAAAAGATTTTCATGCAAAAGAAAA
131 ATTTAAGAAATGAATTTTGATTTTAAGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAA
* * * * * * *
1102250 TCATCATTATTATTTATCCTAATGAGGAGAATGTCTTTATAGTGTCTAAACAAAAAATGAAGGAA
196 TCATAAATATCATTTATCATAACGAAGAGAATGTCTTTATAGTGCCTAAACAAAAAATGAAGGAA
* *
1102315 GATCATTACTAGAATCCATGTTTGTCTCATAAGATGCACGAACTTAGACTTTGCAGAAATTGGTG
261 GATCATTACTAGAATCCATGTTTGTCTCATAAGA-GCACGAACTTAGACTTTACAAAAATTGGTG
* * * * ** *
1102380 GGAAGAAAGCCTTTTTTGCAAAACGAAAGTCTCAATATCGTGTATCCTTATGAGAAGACTCTGTT
325 GGAAGAAAGCCTTTCTTGCAAAACCAAAGTATCAATATCGTGTATCCTAATGAGAAGACTAAGCT
* * *
1102445 TATGGTGCCTAATCCTAAAAAGAATGGGGATTGGTATGACTATTCATGTTTGCATTATTTAAGAG
390 TATGGTGCCTAATCCTAAAAAGAATGGGGAATGGCATGACTATTCATGGTTGCATTATTTAAGAG
** * *** * * * *
1102510 TCAAATTTTGATTCTATCAAAATGGTGGAATGAGAAGCTTTTCTTATGACCCTAAAGCTTCAATG
455 GAAAACTTTGATTCTATCAAAATGGAAAAATGAAAAGCTTTTCTTATGACCCTAAAACATCAACG
* * * *
1102575 TCATGTATCCTAATGAAAGGAATGCATTTTTGGTTCCCAATCTTGAAAAGAATGGAGACCGTTTA
520 TCATGCATCCCAATGAAAGGAATGCATTCTTGGTTCCCAATCTTGAAAAGAATAGAGACCGTTTA
**** * ** ** *
1102640 GGGTTCCTAATGCTAAAAATAATAAGGATTAGTATGACGATTCATTTTTGTGTTATTTGAGAGAC
585 GGACAACTAATGCTAAAAATAATAAGGATTAGTA-GACGATTCATTTTAGTGAAATGGGAAAGAC
* * **
1102705 AAACTTTGATTCTATCAA
649 AAACTTTCATGCTAGAAA
* * *
1102723 AAAACAGTGGAAAGAAAACCATTTCTTGTGACACCAAAGCATCAATGCCATGTATCCCAATGAAA
1 AAAACAGTGGAAAGAAAACCATTTCTTGCGACACCAAA-CATCAATGCCACGCATCCCAAT-AAA
* * * ** **
1102788 -GGAATGTGTTCTTTGTTCTC-AATCCTGAAAAGAAT-GAAAATTGTTATGACAATTGATTTTTA
64 GGGAATGTGTTCTTGGTTCTCAAAT-CTGAAAAGAATAG-AAACTGTTACGACAATCAATCCTTA
* ** * *
1102850 TCATATTTACGAAATGAATTTTGATTTTAAGGAAAATAGGTTAAAGATAATATTTTCATGCAAAA
127 TCATATTTAAGAAATGAATTTTGATTTTAA-GAAAATAGGGCAAAGAAAAGATTTTCATGCAAAA
* *
1102915 GAAAATCATAAATATCATTTATCATAACGAAGAGAATGTGC-TTATAGTGCCTAATCACAAAATG
191 GAAAATCATAAATATCATTTATCATAACGAAGAGAATGT-CTTTATAGTGCCTAAACAAAAAATG
* * * * *
1102979 AATGAAGATCCTTGCTAGAATTCATGTTTGTCTCATTTAAG-GCATGAACTTAGACTTTACAAAA
255 AAGGAAGATCATTACTAGAATCCATGTTTGTCTCA--TAAGAGCACGAACTTAGACTTTACAAAA
*
1103043 ATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAG-ATCAATATCGTGTATCCTAATGAGAAGA
318 ATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGTATCAATATCGTGTATCCTAATGAGAAGA
* * *
1103107 CTAAGCTTATGGTGCCTAATCCTGAAAAGAATGGGGTAAT-GCATGAGTCTTCATGGTTGTC-TT
383 CTAAGCTTATGGTGCCTAATCCTAAAAAGAATGGGG-AATGGCATGACTATTCATGGTTG-CATT
*
1103170 ATTTAAGAGGAAAACTTTGATTCTATCAAAAATGGCAAAAAT-AAAAGTTTTTCTT-TCGACACC
446 ATTTAAGAGGAAAACTTTGATTCTATC-AAAATGG-AAAAATGAAAAGCTTTTCTTAT-GAC-CC
* * * * *
1103233 -AAAACATCAACGTCGTGCATCCCAAT-AAGGGGAATGTATTCTTGGTTCCTAATCTTGAAAGGA
507 TAAAACATCAACGTCATGCATCCCAATGAA-AGGAATGCATTCTTGGTTCCCAATCTTGAAAAGA
*
1103296 CTAGAGAC
571 ATAGAGAC
1103304 TGTTATGACA
Statistics
Matches: 488, Mismatches: 78, Indels: 28
0.82 0.13 0.05
Matches are distributed among these distances:
668 36 0.07
669 194 0.40
670 248 0.51
671 6 0.01
672 4 0.01
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.31
Consensus pattern (666 bp):
AAAACAGTGGAAAGAAAACCATTTCTTGCGACACCAAACATCAATGCCACGCATCCCAATAAAGG
GAATGTGTTCTTGGTTCTCAAATCTGAAAAGAATAGAAACTGTTACGACAATCAATCCTTATCAT
ATTTAAGAAATGAATTTTGATTTTAAGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAA
TCATAAATATCATTTATCATAACGAAGAGAATGTCTTTATAGTGCCTAAACAAAAAATGAAGGAA
GATCATTACTAGAATCCATGTTTGTCTCATAAGAGCACGAACTTAGACTTTACAAAAATTGGTGG
GAAGAAAGCCTTTCTTGCAAAACCAAAGTATCAATATCGTGTATCCTAATGAGAAGACTAAGCTT
ATGGTGCCTAATCCTAAAAAGAATGGGGAATGGCATGACTATTCATGGTTGCATTATTTAAGAGG
AAAACTTTGATTCTATCAAAATGGAAAAATGAAAAGCTTTTCTTATGACCCTAAAACATCAACGT
CATGCATCCCAATGAAAGGAATGCATTCTTGGTTCCCAATCTTGAAAAGAATAGAGACCGTTTAG
GACAACTAATGCTAAAAATAATAAGGATTAGTAGACGATTCATTTTAGTGAAATGGGAAAGACAA
ACTTTCATGCTAGAAA
Found at i:1103662 original size:475 final size:474
Alignment explanation
Indices: 1102665--1104651 Score: 2270
Period size: 475 Copynumber: 4.2 Consensus size: 474
1102655 AAAATAATAA
** * * * *
1102665 GGATTAGTATGACG-ATTCATTTTTGTGTTATTTGAGA-GACAAACTTTGATTCTATCAAAAAAC
1 GGATTAGTATGA-GTATTCATGGTTGTCTTATATAAGAGGA-AAACTTTGATTCTATC-AAAAAT
* * *** * * * * * *
1102728 AGTGGAAAGAAAACCATTTCTTGTGACACCAAAGCATCAATGCCATGTATCCCAATGAAAGGAAT
63 GGTGGAAATAAAAGTTTTTCTTGCGACACCAAAACATCAATGTCATGCATCCTAAT-AAGGGAAT
* * * * * * * *
1102793 GTGTTCTTTGTTCTCAATCCTGAAAAGAAT-GAAAATTGTTATGACAATTGATTTTTATCATATT
127 GTATTCTTGGTTCCCAATCTTGAAAAGAATAG-AGACTGTTATGACAATCGATTCTTATCATATT
* ** * ** * * * * *
1102857 TACGAAATGAATTTTGATTTTAAGGAAAATAGGTTAAAGATAATATTTTCATGCAAAAGAAAATC
191 TAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAGAAGAAAAAC
* * * * * *
1102922 ATAAATATCATTTATCATAACGAAGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGA
256 ATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAAA
* * *
1102987 TCCTTGCTAGAATT-CATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTACAAAAATTGGTGG
321 TCCTTACTAG-ATTCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGATGG
* * * *
1103051 GAAGAAAGCCTTTCTTGCGAAACCAAA--GATCAATATCGTGTATCCTAATGAGAAGACTAAGCT
385 GAA-AAAGCCTTTCTTGCGAAACCAAATCG-TCAATATCATGTATCCTAAAGAGAAGACTATGTT
*
1103114 TATGGTGCCTAATCCTGAAAAGAATGG
448 TATGGTGCCTAATCCAGAAAAGAATGG
* * * *
1103141 GG-TAATGCATGAGTCTTCATGGTTGTCTTATTTAAGAGGAAAACTTTGATTCTATCAAAAATGG
1 GGATTA-GTATGAGTATTCATGGTTGTCTTATATAAGAGGAAAACTTTGATTCTATCAAAAATGG
*** * * * *
1103205 CAAAAATAAAAGTTTTTCTTTCGACACCAAAACATCAACGTCGTGCATCCCAATAAGGGGAATGT
65 TGGAAATAAAAGTTTTTCTTGCGACACCAAAACATCAATGTCATGCATCCTAATAA-GGGAATGT
* * * **
1103270 ATTCTTGGTTCCTAATCTTGAAAGGACTAGAGACTGTTATGACAATTAATTCTTATCATATTTAA
129 ATTCTTGGTTCCCAATCTTGAAAAGAATAGAGACTGTTATGACAATCGATTCTTATCATATTTAA
*
1103335 GGGATGAACTTTGATTTTACAGG-AAATAGGGCAAAGAGAAGATTTCCATGCAGAAGAAAAACAT
194 GGGATGAACTTTGATTTTA-AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAGAAGAAAAACAT
*
1103399 CAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAAAAAATGAATGAAAATC
258 CAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAAATC
* * * *
1103464 CTTACTAGATTCCATTTTTGTCTCATTTGAGGCATGAACCTAGACTTTACAAAATTTGATTGGAA
323 CTTACTAGATTCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGATGGGAA
* * * ** *
1103529 AAAGCCTTTCTTTCTAAACCAGATCGTCAATATCATGTATTTTAAAGAGAAGACTATGTTTATTG
388 AAAGCCTTTCTTGCGAAACCAAATCGTCAATATCATGTATCCTAAAGAGAAGACTATGTTTATGG
1103594 TGCCTAATCCAGAAAAGAATGG
453 TGCCTAATCCAGAAAAGAATGG
* * **
1103616 GGATTAGTATGATTATTCATGGTTCTCTTATATAAGA-GACAAACTTTGATTCTATCAAAAACAG
1 GGATTAGTATGAGTATTCATGGTTGTCTTATATAAGAGGA-AAACTTTGATTCTATCAAAAATGG
* * *
1103680 TGGAAAGAAAAGATTTTT-TTGCGACAGC-AAACATTAATGTCATGCATCCTAATAAAGGGAATG
65 TGGAAATAAAAG-TTTTTCTTGCGACACCAAAACATCAATGTCATGCATCCTAAT-AAGGGAATG
* * * * * **
1103743 TGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGA-TGTTATGACCATCGATCCTCGTCATATTTA
128 TATTCTTGGTTCCCAATCTTGAAAAGAATAGAGACTGTTATGACAATCGATTCTTATCATATTTA
* * * ** * * *
1103807 ACGGTTGAACTTTGATTTTAAGGAAAATAGAGTTAAGAAAAGATTTCCACGCAGAATAAAATCAT
193 AGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAGAAGAAAAACAT
* * *
1103872 CATTATCATTTATCCTAATGAGGAGAATGTGTTTATGGTGCCTAATCACAAAATGAATGAAGATC
258 CAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAAATC
* * * *
1103937 ATTACTAGAATCCATGTTTGTCTAATTTGAGGCATGAACTTATACTTTACAAAAATT-AGTGGGT
323 CTTACTAGATTCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGA-TGGG-
* * ** * * * * *
1104001 AGAAAGCC--T-TGGAAAAACCAAAGT-GTCAATATCGTGTGTCCTTATGAGAGGACTATGTTTA
386 AAAAAGCCTTTCTTGCGAAACCAAA-TCGTCAATATCATGTATCCTAAAGAGAAGACTATGTTTA
*
1104062 TGCTGCCTAATCCTA-AAAAGAATGG
450 TGGTGCCTAATCC-AGAAAAGAATGG
** * *
1104087 GGATTAGTATGAGCCTTCATGGTTGTCTTATTTAAGAGGAAAACTTTGATTCTATAAAAAAATGG
1 GGATTAGTATGAGTATTCATGGTTGTCTTATATAAGAGGAAAACTTTGATTCTAT-CAAAAATGG
*
1104152 TGGAAATAAAAGTTTTTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGT
65 TGGAAATAAAAGTTTTTCTTGCGACACCAAAACATCAATGTCATGCATCCTAAT-AAGGGAATGT
* * * *
1104217 ATTCTTGGTTCCCAATCATGAAAAGATTAGAGACTATTATGATAATCGATTCTTGA-CATATTTA
129 ATTCTTGGTTCCCAATCTTGAAAAGAATAGAGACTGTTATGACAATCGATTCTT-ATCATATTTA
* * * * * *
1104281 AGGGATGAACTTTGATTTTATGGGAAATAGGTCAAAGAAAAGATTTTCAAGCAGAAGAAAAACTT
193 AGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAGAAGAAAAACAT
* * * *
1104346 CAATATCGTTCATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAGAAAATGAATAAAAATC
258 CAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAAATC
* * * *
1104411 CTTACTAGATTCCATGTTTGTCTCATTTGAGGCAAGAACTTAAACTTTACAAAAATTGGTAGGAA
323 CTTACTAGATTCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGATGGGAA
* * *
1104476 AAAGCCTTTCTTTCGAAACCAAATCATCAATATCATGTGTCCTAAAGAGAAGACTATGTTTATGG
388 AAAGCCTTTCTTGCGAAACCAAATCGTCAATATCATGTATCCTAAAGAGAAGACTATGTTTATGG
* *
1104541 TGCCTAATCCAGAGAAGAATGA
453 TGCCTAATCCAGAAAAGAATGG
* * * *
1104563 GGATTAGTATGATTATTAATGGTTGTCTTATAT-AG-GAACAAACTTTGATTCTATCAAAAACGG
1 GGATTAGTATGAGTATTCATGGTTGTCTTATATAAGAGGA-AAACTTTGATTCTATCAAAAATGG
* *
1104626 TGGAAAGAAAAGCTTTTCTTGCGACA
65 TGGAAATAAAAGTTTTTCTTGCGACA
1104652 GCAGGCATGA
Statistics
Matches: 1269, Mismatches: 211, Indels: 64
0.82 0.14 0.04
Matches are distributed among these distances:
471 111 0.09
472 35 0.03
473 258 0.20
474 311 0.25
475 410 0.32
476 142 0.11
477 2 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (474 bp):
GGATTAGTATGAGTATTCATGGTTGTCTTATATAAGAGGAAAACTTTGATTCTATCAAAAATGGT
GGAAATAAAAGTTTTTCTTGCGACACCAAAACATCAATGTCATGCATCCTAATAAGGGAATGTAT
TCTTGGTTCCCAATCTTGAAAAGAATAGAGACTGTTATGACAATCGATTCTTATCATATTTAAGG
GATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAGAAGAAAAACATCAA
TATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAAATCCTT
ACTAGATTCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGATGGGAAAAA
GCCTTTCTTGCGAAACCAAATCGTCAATATCATGTATCCTAAAGAGAAGACTATGTTTATGGTGC
CTAATCCAGAAAAGAATGG
Found at i:1105552 original size:476 final size:470
Alignment explanation
Indices: 1104654--1105880 Score: 1329
Period size: 476 Copynumber: 2.6 Consensus size: 470
1104644 TTGCGACAGC
* * *
1104654 AGGCATGAACTTAGACTTTGCAAAAATTGGCAAGTAGAAAGCCTTTTTTGGAAAACCAAAGTGTC
1 AGGCATGAACTTAGACTTTGCAAAAATTGGCAAGAAGAAAGCCTTTATTGCAAAACCAAAGTGTC
* * * * * * *
1104719 AATATCGTGTTTCTTTATGAGATGACTTTGTTTATGGTGCCTAATCCTAGAAAGAATAGGGATTA
66 AATATCGTGTATCCTAATGAGAAGAC-TCGTTTATGGTGCCTAATCCTAAAAAGAATAGGGCTTA
* * * * *
1104784 GTATGAGTCTTCATGGTTGTCTTATTTAAAAGGCAAACTTTGATTCTATCAAAAACAGTGGAAAG
130 GTATGA-TATTCATGTTTGTCTTATTTAAGA-GAAAACTTTGATTCTACCAAAAACAGTGGAAAG
* * *
1104849 AAAAGCT-TTTCTTGCAAT-A-GCAAA-CATCAATGTCAGGCATCCTAATGAAAGGGAATGTGTT
193 AAAAG-TATTTCTT---ATGACCCAAAGCATCAATGTCATGTATCCTAATGAAA-GGAATG-GTT
** * * * ** * *
1104910 CATGGTTTTCAAAT-TTGTAAAGAATGGAGACTGTTATGACAATCGATCCTTGTCAAATTTAAGG
252 TTTGG-TTCCCAATCTTG-AAAGAATGGAAACTGTTACAACAATCAATCCTTGCCAAATTTAAGG
* * * *
1104974 AATAAATTTTGATTTTAAGGAAAATAGGGCAATGAAAAGATTTTCATCCAAAAGAAAATTATCAA
315 AATAAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATGTCCAACCAAAAGAAAATTATCAA
* * * * *
1105039 TATCTTTTATCCTAATAAGGATAATATGTTTATAGTGCCTAATCACAAAATGAATGATGATCATT
380 TATCATTTATCATAATAAGGAGAATATGTTTATAGTGCCTAATCACAAAATAAATGAAGATCATT
*
1105104 ACTAGAATCCATGTTTGTCTCATTTG
445 ACTAGAACCCATGTTTGTCTCATTTG
* * *** * *
1105130 AGGCACGAACTTAGACATTGCAAAAATTGGTGGGAAGAACGCCTTTCTTGCAAAACCAAAGTGTC
1 AGGCATGAACTTAGACTTTGCAAAAATTGGCAAGAAGAAAGCCTTTATTGCAAAACCAAAGTGTC
* * * ** *
1105195 AATATTGTGTATCCTAAGGAGAAGACTACGTCTATGGTGCCTAATCCTAAAAAGAACGGGGCTTG
66 AATATCGTGTATCCTAATGAGAAGACT-CGTTTATGGTGCCTAATCCTAAAAAGAATAGGGCTTA
*
1105260 GTATGACTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTACCAAAAACGGTGGAAA-
130 GTATGA-TATTCATGTTTGTCTTATTTAAGAGA-AAACTTTGATTCTACCAAAAACAGTGGAAAG
* *
1105324 AAGAAGTATTTCTTATGACCCAAAAGCATCAATGTCATGTATCTTAACGAAAGGAATGCGTTTTT
193 AA-AAGTATTTCTTATGACCC-AAAGCATCAATGTCATGTATCCTAATGAAAGGAATG-GTTTTT
* * * * **
1105389 GGTTCCCAATCTTGAAATGATTGGAAACTGTTACAAGAATTAATGCTTGCCTTATTTCAAGG-AT
255 GGTTCCCAATCTTGAAA-GAATGGAAACTGTTACAACAATCAATCCTTGCCAAATTT-AAGGAAT
* * * *
1105453 GAATTTTGATTTTATGGAATATAGGGCAAAGAAAAGATGTCCAACCAAAAGAAAATTATCAGTAT
318 AAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATGTCCAACCAAAAGAAAATTATCAATAT
* * * *
1105518 CATTTATCATATTTAGGAGAATGTGTTTATAGTGCCTAATCACAAAATAAATGAAGATCCTTACT
383 CATTTATCATAATAAGGAGAATATGTTTATAGTGCCTAATCACAAAATAAATGAAGATCATTACT
1105583 AGAACCCATGTTTGTCTCATTTG
448 AGAACCCATGTTTGTCTCATTTG
* * * * **
1105606 AGGCATGAACTTAGACTTTTCAAAAATTGGCATGAAAAAAGCCTTTATTGCAAAGCCAAAGCATC
1 AGGCATGAACTTAGACTTTGCAAAAATTGGCAAGAAGAAAGCCTTTATTGCAAAACCAAAGTGTC
* * * * * * * *
1105671 AATATCATGTATCCTAATGAGAAGACTCTATTTATAGAGCCTAATGCTATAAA-TATTGGGCTTT
66 AATATCGTGTATCCTAATGAGAAGACTC-GTTTATGGTGCCTAATCCTAAAAAGAATAGGGC-TT
* * * * **
1105735 AGTACGATGATTCAGGTTTGTGTTATTTGAGAGAAAACTTTGATTCTATGAAAAAACAGTGGAAA
129 AGTATGAT-ATTCATGTTTGTCTTATTTAAGAGAAAACTTTGATTCTA-CCAAAAACAGTGGAAA
** * * *
1105800 GAAAACCATTTCTTGTGACACCAAAGCATCAATGCCATGTATCCTAATGAAGGGAAT-GTTTCTT
192 GAAAAGTATTTCTTATGAC-CCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGGTTT-TT
*
1105864 GGTTCTCAATCTTGAAA
255 GGTTCCCAATCTTGAAA
1105881 AGGGTGGAGA
Statistics
Matches: 625, Mismatches: 108, Indels: 37
0.81 0.14 0.05
Matches are distributed among these distances:
473 2 0.00
474 5 0.01
475 54 0.09
476 534 0.85
477 30 0.05
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (470 bp):
AGGCATGAACTTAGACTTTGCAAAAATTGGCAAGAAGAAAGCCTTTATTGCAAAACCAAAGTGTC
AATATCGTGTATCCTAATGAGAAGACTCGTTTATGGTGCCTAATCCTAAAAAGAATAGGGCTTAG
TATGATATTCATGTTTGTCTTATTTAAGAGAAAACTTTGATTCTACCAAAAACAGTGGAAAGAAA
AGTATTTCTTATGACCCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGGTTTTTGGTTCC
CAATCTTGAAAGAATGGAAACTGTTACAACAATCAATCCTTGCCAAATTTAAGGAATAAATTTTG
ATTTTAAGGAAAATAGGGCAAAGAAAAGATGTCCAACCAAAAGAAAATTATCAATATCATTTATC
ATAATAAGGAGAATATGTTTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAACCCA
TGTTTGTCTCATTTG
Found at i:1107866 original size:12 final size:11
Alignment explanation
Indices: 1107844--1107919 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
1107834 AGAGAAAGAA
*
1107844 GAGAGAGGAGG
1 GAGATAGGAGG
1107855 GATGATAGGAGG
1 GA-GATAGGAGG
*
1107867 AGAGACAGGA--
1 -GAGATAGGAGG
*
1107877 GAGATAGTA--
1 GAGATAGGAGG
1107886 GAGATAGGAGG
1 GAGATAGGAGG
1107897 GATGATAGGAGG
1 GA-GATAGGAGG
*
1107909 AGAGACAGGAG
1 -GAGATAGGAG
1107920 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:1107876 original size:24 final size:24
Alignment explanation
Indices: 1107843--1107928 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
1107833 AAGAGAAAGA
*
1107843 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
1107867 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
1107885 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
1107909 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
1107929 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:1107895 original size:42 final size:42
Alignment explanation
Indices: 1107834--1107952 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
1107824 TAGCCCTCAA
* *
1107834 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
1107876 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
1107918 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
1107953 GAGAGAAGAA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.43, C:0.03, G:0.46, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:1117598 original size:18 final size:18
Alignment explanation
Indices: 1117575--1117682 Score: 58
Period size: 21 Copynumber: 5.3 Consensus size: 18
1117565 ATCTTCTTCT
1117575 CTCCTCCTCCTATCATCC
1 CTCCTCCTCCTATCATCC
*
1117593 CTCCT-CTCTCTATTATCTCTC
1 CTCCTCCTC-CTATCA--TC-C
1117614 CTGTCTCTCCTCCTATCATCC
1 C--TC-CTCCTCCTATCATCC
*
1117635 CTCCTATCTCTACTATC-TCTC
1 CTCC--TC-CTCCTATCATC-C
1117656 CTGTCTCTCCTCCTATCATCC
1 C--TC-CTCCTCCTATCATCC
1117677 CTCCTC
1 CTCCTC
1117683 TCTCTTCTTT
Statistics
Matches: 70, Mismatches: 4, Indels: 32
0.66 0.04 0.30
Matches are distributed among these distances:
17 3 0.04
18 14 0.20
19 4 0.06
20 6 0.09
21 22 0.31
22 6 0.09
23 4 0.06
24 8 0.11
25 3 0.04
ACGTcount: A:0.10, C:0.48, G:0.02, T:0.40
Consensus pattern (18 bp):
CTCCTCCTCCTATCATCC
Found at i:1117630 original size:42 final size:42
Alignment explanation
Indices: 1117578--1117696 Score: 202
Period size: 42 Copynumber: 2.8 Consensus size: 42
1117568 TTCTTCTCTC
*
1117578 CTCCTCCTATCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
1117620 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
1117662 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
1117697 TTGAGGGCTA
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 72 1.00
ACGTcount: A:0.09, C:0.46, G:0.02, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:1117637 original size:12 final size:11
Alignment explanation
Indices: 1117611--1117686 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
1117601 TCTATTATCT
*
1117611 CTCCTGTCTCTC
1 CTCCTATCTC-C
1117623 CTCCTATCATCC
1 CTCCTATC-TCC
1117635 CTCCTATCT--
1 CTCCTATCTCC
*
1117644 CTACTATCT--
1 CTCCTATCTCC
*
1117653 CTCCTGTCTCTC
1 CTCCTATCTC-C
1117665 CTCCTATCATCC
1 CTCCTATC-TCC
*
1117677 CTCCTCTCTC
1 CTCCTATCTC
1117687 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:1118471 original size:15 final size:15
Alignment explanation
Indices: 1118433--1118471 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
1118423 CAAATGCTGG
*
1118433 TTTTTTTTCCTCTCT
1 TTTTTTTTTCTCTCT
* *
1118448 TTTTGTTTTCTTTCT
1 TTTTTTTTTCTCTCT
1118463 TTTTTTTTT
1 TTTTTTTTT
1118472 GTATTCTTGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.00, C:0.15, G:0.03, T:0.82
Consensus pattern (15 bp):
TTTTTTTTTCTCTCT
Found at i:1123665 original size:476 final size:476
Alignment explanation
Indices: 1119323--1127727 Score: 9589
Period size: 475 Copynumber: 17.8 Consensus size: 476
1119313 CCATTGCAAG
* * * * *
1119323 AATCGATGCTTTTCATATTTAAGGGTTGAATTTTTATTTTAAGGAAAATAGAGCAAAGAAAAGAT
1 AATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGA-
* * * * *
1119388 TTTTC-TGCAAAA-AAAATCATCAATATCATTTATCCAAATAAGGAGAATGTGTTTTTTGTGCCT
65 TTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
* * * *
1119451 AATCAAAAAATGAATGAAGATCATTACTGGAATCCATGTTTGTCTCATTTAAGGCACGAACTTAG
130 AATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAG
* ** ** * *
1119516 ACTTTGCAAAAATTGGTGGGAAAAAAGATTTTCTCACAAAACCAAAGCATCCATATCGTGTATCC
195 ACTTTACAAAAATTGGTGGG-AAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCC
* * * * * *
1119581 TAATGAGAAAACTATGTTCATGGTGCCTAATGCTAAAAATAGTAGGGATTAGTACGA-TGATTCA
259 TAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTACGAGT-ATTCA
* * * * * * *
1119645 TGTTTATGTTATTTGAGA-GACAAACTTTGATTCTATCAAAAAACGGGGGAAAGAAAA-TCATTT
323 TGGTTGTCTTATTTAAGAGGACAAACTTTGATTCTATC-AAAAATGGTGGAAAGAAAAGT-TTTT
* * * ** * * * *
1119708 CTTGTGATACCAAAGCATCAATGCCATTTATCCTAATGAAGGGAACGTGTTATTAGTTCCCAATC
386 CTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATC
* * * * *
1119773 CTGCACAGAACGGAGATTGTTATGAC
451 TTGAAAAGAATGGAGACTGTTATGAC
* * * ** * *
1119799 AATCGATTCTTATCATATTTAAGGGATGAATTTTAATTTTAAGGAAAGTAGGAAAAAGATAATAT
1 AATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
** * * * * *
1119864 TTTTACGCAAAAGAAAATCATAAATATCATTTATCGTAACGAGGAGAATGTGTTTATTGTGCCTA
66 TTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* * * * * * *
1119929 ATCACAAAATGAATGAAAATCCTTGCTAGAATTCATGTTTGTATCATTTAAGGCATGATCTTAGA
131 ATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGA
* *
1119994 CTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATTAATATCGTGTCTCCT
196 CTTTACAAAAATTGGTGGG-AAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCT
* * * * * *
1120059 AATGAGAAGACTATGTTTATGGTGCCCAATCTTGAGAAGAATGGGGATTAGTATGAGTCTTCATG
260 AATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTACGAGTATTCATG
* *
1120124 GTTGTCTTATTTAAGAGGA-AAACTTTGATTCTATCAAAAATGGTGGAAATAAAAGTTTTTCTTA
325 GTTGTCTTATTTAAGAGGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGTTTTTCTTG
* *
1120188 CGACACCAAAGCATCAATGTCATGCATCCTAATTAAGGGAATGTATTCTTAGTTCCCAATCTTGA
390 CGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATCTTGA
1120253 AAAGAATGGAGACTGTTATGAC
455 AAAGAATGGAGACTGTTATGAC
* * * **
1120275 AAACGATTCTTGTCATATTTAAGGGATGAATTTTAATTTTAAGGAAAATAGGGTAAA-AAACTAT
1 AATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
* * * * *
1120339 TTTCATGCAAAAGAAAATCATAAATATCATTTATCATAGTGAGGAGAATGTGTTTATAGTGGCTA
66 TTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* * * * *
1120404 ATCAGAAACTGAATGAAGATCATTACTAGAATCCATGTTTGTTTCATTTAAGGCACGAA---AGA
131 ATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGA
* * *
1120466 CTTTACAAAAATTGGCGGGAAAAAGCCTTGCTTGCAAAACCAAAGCATCAATATCGTGTATCCTA
196 CTTTACAAAAATTGGTGGGAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTA
* ** **
1120531 ATGAGAAGACTATGTTTATGGTGCCTAATGCT-AAAAGTAATGGGGATTAGTTTGACG-ATTTGT
261 ATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAG-AATGGGGATTAGTACGA-GTATTCAT
* * * * * * * *
1120594 GTTTGTGTTATTTGAGA-GACAAACTTTGGTTCAATCCGAAAACGGTGGAAAGAAAA-TCATTTC
324 GGTTGTCTTATTTAAGAGGACAAACTTTGATTCTAT-CAAAAATGGTGGAAAGAAAAGT-TTTTC
* * * *
1120657 TTGTGACACCAAAGCATCAAAGCCATGTATCCTAATGAAGGGAATGT-TTCTTGGTTCCCAATCT
387 TTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATCT
** * *** *
1120721 TGAAAAGGGTGGAGACTATTGCAAG
452 TGAAAAGAATGGAGACTGTTATGAC
* * * * *
1120746 AATCGATGCTTGTCATATTTGAGGGTTGAATTTT-ATTTTAAGAAAAATAGAGCAAAGAAAAGAT
1 AATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
* * * * *
1120810 TTCCATGCAAAA-AAAATCATCAACATCTTTTATCCTAAGGAGGAGAATGTGTTTATTGTGCCTG
66 TTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* * *
1120874 ATCACAAAATGAATGAAGATCATTTCTAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGA
131 ATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGA
* * *
1120939 CTTTGCAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATTAATATCATGTATCCT
196 CTTTACAAAAATTGGTGGG-AAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCT
* ** * * * *
1121004 AATGAGAATACTATGTTTATGGTGTGTAATCCTGAAAAGAATGGGGATTAGTGCTAGTTTTCATG
260 AATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTACGAGTATTCATG
* * *
1121069 GTTGTCTTATTTATGAGG--AAACTTTGATTCTATTAAAAATGGTGGAAATAAAAGTTTTTCTTG
325 GTTGTCTTATTTAAGAGGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGTTTTTCTTG
* ** *
1121132 CGACACC-AAGCATCAATGTCATGCATCCTAATGAAGGGAATTTATTCTTGGTTCAGAATGTTGA
390 CGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATCTTGA
1121196 AAAGAATGGAGACTGTTATGAC
455 AAAGAATGGAGACTGTTATGAC
* * * * * * * *
1121218 AAAT-GATTCATATTATATTTAAAGGATGAATTTTAATTTTAAGGAAAATAGGGTAAAGGAAACA
1 -AATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGA
* * * * **
1121282 TGTCCATGC------AAA-CGTCAATATCATTTATCATAATGAGGAGAATGCGTTTATAAAGCCT
65 TTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
** * *
1121340 AATCTTAAAATGAATGAAGATCATTATTAGAATCCATGTTTGTCTCATTTGATGCATGAACTTAG
130 AATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAG
* *
1121405 ACTTTGCAAAAATTGGTGGGAAAAAAG-CTTTCTTGCAAAACCAAAGCATCAATATCGTGTAT-C
195 ACTTTACAAAAATTGGTGGG-AAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCC
* * * * *
1121468 TAAATGAGAAAAACTATGTTTATGGTGCCTAATGCTAAAAATATTGGGGATTAGTATGACG-ATT
259 T-AATGAG-AAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTACGA-GTATT
* * * * * * ***
1121532 C-TTGTATATGTTATTTGAGA-GACAAACTTTGATTCTATCAGAAAACGATGGAAAGAAAACCAT
321 CATGGT-TGTCTTATTTAAGAGGACAAACTTTGATTCTATCA-AAAATGGTGGAAAGAAAAGTTT
* *
1121595 TTCTTGTC-ACACCAAAGCATCAATGCCATGTATCCTAATGAAGGGAATGT-TTCTTGGTTCCCA
384 TTCTTG-CGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCA
** * * * *
1121658 ATCTTGAAAAGGGTGGAGACTATTGTAAG
448 ATCTTGAAAAGAATGGAGACTGTTATGAC
* * * * * * * * *
1121687 ATTCAATGCTTGTCATATTTGAGTGTTGAATTTTTATTTTAAGGTAAATAGAGCAAAGAAAAGAT
1 AATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
* * * ** * * *
1121752 TTCCATGCAAAA-ATAATCATCAACATCTTTTATCCTAAAAAGGAGAATGTCTTTATTGTGCCTG
66 TTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* ** * *
1121816 ATCACAAAATGAATGAAGATCATTTCGGGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGA
131 ATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGA
* * * *
1121881 CTTTGCAAAAATTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATTAATATCATGTATCCT
196 CTTTACAAAAATTGGTGGGAA-AAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCT
* * * * * * * *
1121946 TACGAGAATACTATGTTTATGGTGCGTAATCTTGAAAATAATGGGGATTAGT----G---CCATG
260 AATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTACGAGTATTCATG
** * * *
1122004 GTTGTCTTATTTCTGAGG--GAACTTTGATTCTATTAAAAATGGTGGAAATAAAAGTTTTTCTTG
325 GTTGTCTTATTTAAGAGGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGTTTTTCTTG
* * * *
1122067 CGACACC-AAGCGTCAATGTCATGCATCCTATTGAAGGGAATGTATTCCTGGTTCCCAATGTTGA
390 CGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATCTTGA
1122131 AAAGAATGGAGACTGTTATGAC
455 AAAGAATGGAGACTGTTATGAC
* * * * * * *
1122153 AAAT-GATTCATGCCATATTTAAAGGATGAATTTTAATTTTAAGGAAAATAGGGTAAAGGAAACA
1 -AATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGA
* * * **
1122217 TTTCCA--C----GCAAA-CGTCAATATCATTTATCATAATGAGGAGAATGTGTTTATAAAGCCT
65 TTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
* *
1122275 AATCTCAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGACGCATGAACTTAG
130 AATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAG
* * * * ** *
1122340 ACTCTGCAAAAATTGATGGGTAGAAAGCCTTTCTTG-GAAAACCAAAGTGTCAATATCGTGTGTC
195 ACTTTACAAAAATTGGTGGG-AAAAAGCCTTTCTTGCG-AAACCAAAGCATCAATATCGTGTATC
* * * * * **
1122404 CTTATGAGAAGACTATGTATATGGTGCCTAATCTTAAAAAGAATAGGGATTAGTATGAGCCTTCA
258 CTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTACGAGTATTCA
* **
1122469 TGGTTGTCTTATTTAAGAGGA-AAACTTTGATTCTATAAAAAATGGTGGAAATCAAAG-TTTT-T
323 TGGTTGTCTTATTTAAGAGGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGTTTTTCT
**
1122531 TGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATCAC
388 TGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATCTT
* * *
1122596 GAAAAGAATGGAGAGTATTATGGC
453 GAAAAGAATGGAGACTGTTATGAC
* * * * *
1122620 AATTGATTCTTGTCATATTTAAGGGATAAACTTTGATTTTATGGGAAATAGGGCAAAGAAAAGAT
1 AATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
* * * * *
1122685 TTCCATGCACAAGAAAAACATCAATATCGTTTATCCAAATGAGGAGAATGTGTTTGTAGTGCCTA
66 TTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* * * * *
1122750 AGCACAAAATGAATGAAAATCTTTACTAGATTCCATGTTTGCCTCATTTGAGGCATGAACTTAGA
131 ATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGA
** * * * *
1122815 CTTTACAAAAATTGGTGGGAAAAAGCCTTTCTTTTGAAGCCAAATCATCCATATCATGTATCCTA
196 CTTTACAAAAATTGGTGGGAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTA
* * ** * *
1122880 A-AAGGAAGACTACGTTTATGGTGCCTAATCC-AGAAAAGAATAAGGATTAGTATGATTATTCAT
261 ATGA-GAAGACTATGTTTATGGTGCCTAATCCTA-AAAAGAATGGGGATTAGTACGAGTATTCAT
* * * * * *
1122943 GATTGTCTTATATAAGA-GACAAACTTTGATTTTTTCAAAAACGGTGGAAAGAAAAGCTTTTCTT
324 GGTTGTCTTATTTAAGAGGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGTTTTTCTT
* * * * * ** * *
1123007 GAGACAGCAAA-CCTCAATGCCAGGCATCCTAATGAAGGGAAAATGTTCTTGGCTCCCAATCTTG
389 GCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATCTTG
*
1123071 AAAAGAATGGAGACTGTAATGAC
454 AAAAGAATGGAGACTGTTATGAC
* * * *
1123094 GATCGATCCTTGTCATATTTAAGGGATGAATTTTGATTTTAAAGAAAATAGGGCAAAAAAAAGAT
1 AATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
* * * * *
1123159 TTTCACGTAAAAGAAAATCATCATTATCATTTATCCTAATGAGGAGAAGGTGTTTATAGTGCCTA
66 TTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* *
1123224 ATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGACACGAACTTAGA
131 ATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGA
* * ** * * * *
1123289 CTTTGCAAAAATTAGCAGGAAGAAAGCCTTTCTTGTGAAACCAAAGCGTCCATATCGTGTATTCT
196 CTTTACAAAAATTGGTGGGAA-AAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCT
* * * * *
1123354 TATGAGAAGGCTATGTTTATAGTGCCTAATCCTAAAAAGAATAGGGATTAGTACGAGTCTTCATG
260 AATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTACGAGTATTCATG
* * * *
1123419 GTTGCCTTATTTATGAGGA-AAACTTTGATTCTATCAAAATTGGTGGAAATAAAAGTTTTTCTTG
325 GTTGTCTTATTTAAGAGGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGTTTTTCTTG
* * *
1123483 CGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTACTCCTCGTTCCCAATCTTGA
390 CGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATCTTGA
*
1123548 AAAGAATGGAGGCTGTTATGAC
455 AAAGAATGGAGACTGTTATGAC
* * * * * *
1123570 AAACGATTCTTGTCATATTTAAGGGATGAATTGTAATTTTATGGAAAATAGGGTAAAGAAAACAT
1 AATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
* * *
1123635 TTCCATGCAAAAGAAAATCGTCAATATCATTTATCATAATGAGGAGAATGTGTTTATAATGCCTA
66 TTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* * * *
1123700 ATCTCAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTGGATGCATAAACTTAGA
131 ATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGA
** * *
1123765 CTTTACAATTATTGGTGGGAAAAAGGTCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCT
196 CTTTACAAAAATTGGTGGGAAAAA-GCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCT
* * * *
1123830 AATGAGAAGACTATGTTTATGGTGCCTAATACTAAAAATAGTGGGGATTAGTACGA-TGATTCTT
260 AATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTACGAGT-ATTCAT
* * * ** ****
1123894 GTTTGTGTTATTTGAGA-GACAAACTTTGATTCTATCAAAAAACAGTGGAAAGAAAACCAGTTCT
324 GGTTGTCTTATTTAAGAGGACAAACTTTGATTCTATC-AAAAATGGTGGAAAGAAAAGTTTTTCT
* * * * *
1123958 TGTGATACCAAAGCATCAATGCCATGTATCCTAATGAAGGGAATGT-TGTCTTAGTTCCCAATCT
388 TGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTAT-TCTTGGTTCCCAATCT
*
1124022 TGAAAAGAATGGAGATTGTTATGAC
452 TGAAAAGAATGGAGACTGTTATGAC
* * *
1124047 AATCGATTCTTATCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGACAATAT
1 AATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
* * * * * *
1124112 TTCCATGCAAAAGAAAA-CGTAAATAACATTTATCATAACGAGGAGAATGTGTTTATAATGCCTA
66 TTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* * * * *
1124176 ATCACAAAATGAATGAAGATCCTTGCTAGAAAT-CATGTTTGTCTCCTTTGAGGCATGTACTTAA
131 ATCACAAAATGAATGAAGATCATTACTAG-AATCCATGTTTGTCTCATTTGAGGCATGAACTTAG
* *
1124240 ACTTTACAAAAAATGGCGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCC
195 ACTTTACAAAAATTGGTGGG-AAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCC
* * * ** * *
1124305 TAACGAGAAGACTATGTTTATGGTGCCTAATCCTGAGAAGAATGGGGATTAGTATAACTCTTCAT
259 TAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTACGAGTATTCAT
* * **
1124370 GGTTTTCTTATTTAAGAGGA-AAACTTTGATTCTATCAAAACTGGTGGAAATCAAAGTTTTTCTT
324 GGTTGTCTTATTTAAGAGGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGTTTTTCTT
*
1124434 GCGACACCAAAGCTTCAATGTCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATCTTG
389 GCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATCTTG
* * *
1124499 AAAAGAATGGAGAGTATTATGGC
454 AAAAGAATGGAGACTGTTATGAC
* * * * *
1124522 AATTGATTCTTGTCATATTTAAGGGATAAACTTTGATTTTATGGGAAATAGGGCAAAGAAAAGAT
1 AATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
* * * * * *
1124587 TTCCATGCACAAGAAAAACATCAATATCGTTTATCCAAATAAGGAGAATGTGTTTGTAGTGCCTA
66 TTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* * * * *
1124652 AGCACAAAATGAATGAAAATCTTTACTAGATTCCATGTTTGTCTCATTTGAGGCTTGAACTTAGA
131 ATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGA
* * * * *
1124717 CTTTACAAAAATTGGTGGGAAAAAGCCTTTCTTTCGAAGCCAAATCATCCATATCATGTATCCTA
196 CTTTACAAAAATTGGTGGGAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTA
* * * ** * *
1124782 A-AAGGAAGACTACGTTTATGGTGCCTAAT-CTAGAAAGGAATAAGGATTAGTATGATTATTCAT
261 ATGA-GAAGACTATGTTTATGGTGCCTAATCCTA-AAAAGAATGGGGATTAGTACGAGTATTCAT
* * * * * *
1124845 GATTGTCTTATATAAGA-GACAAACTTTGATTTTTTCAAAAACGGTGGAAAGAAAAGCTTTTCTT
324 GGTTGTCTTATTTAAGAGGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGTTTTTCTT
* * * * ** * *
1124909 GAGACAACAAA-CCTCAATGCCATGCATCCTAATGAAGGGAAAATGTTCTTGGCTCCCAATCTTG
389 GCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATCTTG
* *
1124973 AAAAGAATGGAGATTGTAATGAC
454 AAAAGAATGGAGACTGTTATGAC
* * * *
1124996 GATCGATCCTTGTCATATTTAAGGGATGAATTTTGATTTTAAAGAAAATAGGGTAAA-AAAAGAT
1 AATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
* * * *
1125060 TTTCACGCAAAAGAAAATCATCATTATCATTTATCCTAATGAGGAGAAGGTGTTTATAGTGCCTA
66 TTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* * *
1125125 ATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGACACGAACTTAGA
131 ATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGA
* * ** * * * * *
1125190 CTTTGCAAAAATTAGCAGGAAGAAAGCCTTTCCTGTGAAACCAAAGCGTCCATATCGTGTATTCT
196 CTTTACAAAAATTGGTGGGAA-AAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCT
* * ** * * * *
1125255 TATGAGAAGGCTATGTTTATATTGCCTAATCCTAAAAGGAATAGGGATTAGTACAAGTCTTCATG
260 AATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTACGAGTATTCATG
* * * *
1125320 GTTGCCTTATTTATGAGGA-AAACTTTGATTCTATCAAAATTGGTGGAAATAAAAGTTTTTCTTG
325 GTTGTCTTATTTAAGAGGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGTTTTTCTTG
* * * * *
1125384 CGACACCAAAACATCAATGTCATGCTTCCTAATGAAGGGAATGTACTCCTCGTTCCCAATCTTGA
390 CGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATCTTGA
* *
1125449 AAAGAATGGAGGCTGTTATGAG
455 AAAGAATGGAGACTGTTATGAC
* * * * *
1125471 AAACGATTCTTGTCATATTTAAGGGATGAATTATAATTTTAAGGAAAATAGGGTAAAGAAAACAT
1 AATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
* * *
1125536 TTCCATGCAAAAGAAAATCATCAATATCATTTATCATAATGAGGAAAATGTGTTTATAATGCCTA
66 TTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* * * *
1125601 ATCTCAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTGGATGCATAAACTTAGA
131 ATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGA
* * *
1125666 CTTTACAAATATTGGTGGGAAAAAGGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCT
196 CTTTACAAAAATTGGTGGGAAAAA-GCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCT
* * * *
1125731 AATGAGAAG-CTATGTTTATGGTGCCTAATACTAAAAATAGTGGGGATTAGTACGA-TGATTCTT
260 AATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTACGAGT-ATTCAT
* * * ** ***
1125794 GTTTGTGTTATTTAAGA-GACAAACTTTGATTTTATCAAAAAACAGTGGAAAGAAAACCATTTCT
324 GGTTGTCTTATTTAAGAGGACAAACTTTGATTCTATC-AAAAATGGTGGAAAGAAAAGTTTTTCT
* * * * *
1125858 TGTGACACCAAAGCATCAACGCCATGTATCCTAATGAAGGAAATGTATTCTTGGTTCCCAATCTT
388 TGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATCTT
* * *
1125923 GAAAAGAATGGAGAGTATTATGGC
453 GAAAAGAATGGAGACTGTTATGAC
* * * * * *
1125947 AATTGATTCTTGTCATATTTAAGGGATAAACTTTGATTTTATGGGAAAT-GGGCAAAGAGAAGAT
1 AATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
** * * *
1126011 TTTAATGCACAAGAAAAACAACAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
66 TTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* * **
1126076 ATCACAAAATGAATGAAAATCTTTACTAGTTTCCATGTTTGTCTCATTCT-AGGCATGAACTTAG
131 ATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATT-TGAGGCATGAACTTAG
* * * * *
1126140 ACTTCACAAAAATTGGTGGGAAAAAGCCTTTCTTTCGAAACCAAATCATCCATATCATGTATCCT
195 ACTTTACAAAAATTGGTGGGAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCT
** * * * * *
1126205 AAACAGAAGACTGTG-TTATGGTGCCTAATCCAAAAAAGAATGAGGATTAGTATGATTATTCATG
260 AATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTACGAGTATTCATG
* * * * *
1126269 GTTATCTTGTATAAGA-GACAAACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTG
325 GTTGTCTTATTTAAGAGGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGTTTTTCTTG
* ** * * * * * *
1126333 CGATAGGAAA-CTTCAATGCCATGCATCCTAATGAAGGGAAAGTGTTCCTAGTTCCCAATCTTGA
390 CGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATCTTGA
1126397 AAAGAATGGAGACTGTTATGAC
455 AAAGAATGGAGACTGTTATGAC
* * *
1126419 AATCGATCCTTGTCATATTTAACGGATGAATTTTGATTTTAAAGAAAATAGGGCAAA-AAAAGAT
1 AATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
* * *
1126483 TTTCATGCAAAAGAAAATCATCATTATCATTTATCCTAATGAGGAGAATGTGTTTAGAGTGCCTA
66 TTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* * *
1126548 ATCATAAAATGAATGAAGATCATTACTAGAATCCACGTTTGTCTCATTTGAGGCACGAACTTAGA
131 ATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGA
** * * ***
1126613 CTTTGTAAAAATTGGTGAGAAGAAAGCATTTCTTG-GAAAACCAAATTGTCAATATCGTGTATCC
196 CTTTACAAAAATTGGTGGGAA-AAAGCCTTTCTTGCG-AAACCAAAGCATCAATATCGTGTATCC
* * * * * * * * *
1126677 TTATGAGATGACTATGTTTATGGTGCCAAATCCTAAAAAGAGTGGGAACTAATATGAGTCTTCAT
259 TAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTACGAGTATTCAT
* * * * * * * *
1126742 GATTTTCTTCTTTAAGAGG-CAAACTTTGATTCTTTCAAAAATAGTGGAAAGAGAAGCTTCTCTT
324 GGTTGTCTTATTTAAGAGGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGTTTTTCTT
** * * * * * *
1126806 ATGACCCCAAAGCATCAATGTCATGTAACTTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTG
389 GCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATCTTG
* * * ** *
1126871 AAATGAATAGAGGCTGTTACAAG
454 AAAAGAATGGAGACTGTTATGAC
* * * * * * *
1126894 AATC-ACTGCTTGCCTTATTTCA-TGAAGAATTTTGATTTTATGGAAAATAGGGCAAAGAAAAGA
1 AATCGA-TTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGA
* ** * * * * *
1126957 TTTTCAACCAAAAGAAAATTATCAGTATAATTTATCATAATGAGGAGAAGGTGTTTATAGTGCCT
65 TTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
* * *
1127022 AATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGACACGAACTTAG
130 AATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAG
* * ** * * * *
1127087 ACTTTGCAAAAATTAGCAGGAAGAAAGCCTTTCTTGTGAAACCAAAGCGTCCATATCGTGTATTC
195 ACTTTACAAAAATTGGTGGGAA-AAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCC
* * * * * *
1127152 TTATGAGAAGGCTATGTTTATAGTGCCTAATCCTGAAAAGAATAGGGATTAGTACGAGTCTTCAT
259 TAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTACGAGTATTCAT
* * * *
1127217 GGTTGCCTTATTTATGAGGA-AAACTTTGATTCTATCAAAATTGGTGGAAATAAAAGTTTTTCTT
324 GGTTGTCTTATTTAAGAGGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGTTTTTCTT
* * *
1127281 GCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTACTCCTCGTTCCCAATCTTG
389 GCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATCTTG
*
1127346 AAAAGAATGGAGGCTGTTATGAC
454 AAAAGAATGGAGACTGTTATGAC
* * * * *
1127369 AAACGATTCTTGTCATATTTAAGGGATGAATTATAATTTTAAGGAAAATAGGGTAAAGAAAACAT
1 AATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
* * *
1127434 TTCCATGCAAAAGAAAATCATCAATATCATTTATCATAATGAGGAAAATGTGTTTATAATGCCTA
66 TTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* * * *
1127499 ATCTCAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTGGA-TCATAAACTTAGA
131 ATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGA
* *
1127563 CTTTACAAATATTGGTGGGAAAAAGGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCT
196 CTTTACAAAAATTGGTGGGAAAAA-GCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCT
* ** * * * *
1127628 AGTGAGAAG-CTATGTTTATATTGCCTAATACTAAAAATAGTGGGGATTAGTACGA-TGATTCTT
260 AATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTACGAGT-ATTCAT
* *
1127691 GTTTGTGTTATTTAAGA-GACAAACTTTGATTCTATCA
324 GGTTGTCTTATTTAAGAGGACAAACTTTGATTCTATCA
1127728 CATAATAAAG
Statistics
Matches: 6660, Mismatches: 1148, Indels: 244
0.83 0.14 0.03
Matches are distributed among these distances:
459 1 0.00
460 192 0.03
461 3 0.00
464 2 0.00
465 35 0.01
466 168 0.03
467 340 0.05
468 66 0.01
469 118 0.02
470 156 0.02
471 231 0.03
472 417 0.06
473 426 0.06
474 1054 0.16
475 1621 0.24
476 1404 0.21
477 423 0.06
478 3 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (476 bp):
AATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
TTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
ATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGA
CTTTACAAAAATTGGTGGGAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTA
ATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTACGAGTATTCATGG
TTGTCTTATTTAAGAGGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGTTTTTCTTGC
GACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATCTTGAA
AAGAATGGAGACTGTTATGAC
Found at i:1127947 original size:228 final size:225
Alignment explanation
Indices: 1127513--1127955 Score: 618
Period size: 228 Copynumber: 2.0 Consensus size: 225
1127503 CAAAATGAAT
* * * *
1127513 GAAGATCATTACTAGAATCCATGTTTGTCTCATTGGATCATAAACTTAGACTTTACAAATATTGG
1 GAAGATCATTACTAGAATCCATATTTGTCTCATTGGACCATAAACTTAGACTTTACAAAAAATGG
* * *
1127578 TGGGAAAAAGGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAGTGAGAAGCTATGT
66 TGGGAAAAAAGCCTTTCTTGCAAAACCAAAACATCAATATCGTGTATCCTAGTGAGAAGCTAGGT
* * * * * * *
1127643 TTATATTGCCTAATACTAAAAATAGTGGGGATTAGTACGATGATTCTTGTTTGTGTTATTTAAGA
131 TTATAGTGCCTAATACCAAAAATAATAGAGATTAGTACGACGATTCATGTTTGTGTTATTTAAGA
*
1127708 GACAAACTTTGATTCTATCACATAATAAAG
196 GACAAACTTTGATTCAATCACATAATAAAG
* * * *
1127738 GAAGATCCTTACTAGAATCCGTATTTGTCTCATTTGAGCCATGAACTTAGACTTTACAAAAAATG
1 GAAGATCATTACTAGAATCCATATTTGTCTCATTGGA-CCATAAACTTAGACTTTACAAAAAATG
*
1127803 GTGGGAAAAAAAGCCTTTCTTGCAAAACCAAAACATCAATATTGTGTATCCT-GATGAGAAGACT
65 GTGGG-AAAAAAGCCTTTCTTGCAAAACCAAAACATCAATATCGTGTATCCTAG-TGAGAAG-CT
* * * * *
1127867 AGGTTTATGGTGCCTAATGCCGAAAATAATAGATATTAGTATGACGATTCATGTTTGTGTTATTT
127 AGGTTTATAGTGCCTAATACCAAAAATAATAGAGATTAGTACGACGATTCATGTTTGTGTTATTT
1127932 AAGAGACAAACTTTGATTCAATCA
192 AAGAGACAAACTTTGATTCAATCA
1127956 AAAAACGGTG
Statistics
Matches: 189, Mismatches: 25, Indels: 5
0.86 0.11 0.02
Matches are distributed among these distances:
225 33 0.17
226 29 0.15
227 50 0.26
228 77 0.41
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.33
Consensus pattern (225 bp):
GAAGATCATTACTAGAATCCATATTTGTCTCATTGGACCATAAACTTAGACTTTACAAAAAATGG
TGGGAAAAAAGCCTTTCTTGCAAAACCAAAACATCAATATCGTGTATCCTAGTGAGAAGCTAGGT
TTATAGTGCCTAATACCAAAAATAATAGAGATTAGTACGACGATTCATGTTTGTGTTATTTAAGA
GACAAACTTTGATTCAATCACATAATAAAG
Found at i:1128788 original size:475 final size:470
Alignment explanation
Indices: 1127724--1128929 Score: 1520
Period size: 475 Copynumber: 2.6 Consensus size: 470
1127714 CTTTGATTCT
* * * * * * *
1127724 ATCACATAATAAAGGAAGATCCTTACTAGAATCCGTATTTGTCTCATTTGAGCCATGAACTTAGA
1 ATCACAAAATGAATGAAGATCATTACTAGAATCCATTTTTGTCTCATTTGAGGCATGAACTTAGA
* *
1127789 CTTTACAAAAAATGGTGGGAAAAAAAGCCTTTCTTGCAAAACCAAA-ACATCAATATTGTGTATC
66 CTTTACAAAAATTGGTGGG-AAAAAAGCCTTTCTTGCAAAACCAAAGA-ATCAATATCGTGTATC
* * *
1127853 CTGATGAGAAGACTAGGTTTATGGTGCCTAATGCC-GAAAATAAT-AGATATTAGTATGACGATT
129 CTAATGAGAAGACTATGTTTATGGTGCCTAAT-CCTGAAAATAATGAG-GATTAGTATGACGATT
* * *
1127916 CATGTTTGTGTTATT-TAAGAGACAAACTTTGATTCAATCAAAAAACGGTGGAAAGAAAACCATT
192 CATGTTTGTATTATTATGAG-GACAAACTTTGATTCTATC-AAAAACGGTGGAAAGAAAACCATT
** * * *
1127980 TCTTGTGACACGAAAGCATCAATGCCATGTATCCCAATGAAGGGAATGTTTCTTGGTTCCCAATC
255 TCTTGCAACACCAAAGCATCAATGCCATGCATCCCAATAAAGGGAATGTTTCTTGGTTCCCAATC
* * * *
1128045 TTGAAAAGGTGGAGACTATTGCAAGAATCGAAGCTTGTCATATTTGAGGGTTGAATTTTTATTTT
320 TTGAAAAGATGGAGACTATTGCAAGAATCGAAGCTTGTCATATTTAAGGGATGAATTTTAATTTT
* *
1128110 AAGGAAAATAGAGCAAAGAAAAGATTTCCATGCAAAAAAATTCATCATCTTTTATCTTAATGAGG
385 AAGGAAAATAGAGCAAAGAAAAGATTTCCATGCAAAAAAATTCATCATCATTTATCATAATGAGG
* *
1128175 AGAATGTGTTTATTGTGCCTG
450 AGAATGTGTTTATAGTGCCTA
* * * * **
1128196 ATCACAAAATGAATGAAGATCATTTCTGGAAT-CAATGTTGTCTCATTTGAGGCACAAACTTAGA
1 ATCACAAAATGAATGAAGATCATTACTAGAATCCATTTTTGTCTCATTTGAGGCATGAACTTAGA
* * * *
1128260 CTTTGCAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCT
66 CTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGAATCAATATCGTGTATCCT
* * *
1128325 TATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGAGGATTAGTATGA-GTCTTCAT
131 AATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAATAATGAGGATTAGTATGACG-ATTCAT
* * * * * ***
1128389 GGTTGTCTTATCTATGAGGA-AAACTTTGATTCTATCAAAAATGGTGGAAATAGAAGTTTTTCTT
195 GTTTGTATTAT-TATGAGGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCATTTCTT
* * *
1128453 GCAACACCAAAGCATCAATGTCATGCATCCTAATAAAGGGAATGTATTCTTGGTTCCTAATCTTG
259 GCAACACCAAAGCATCAATGCCATGCATCCCAATAAAGGGAATGT-TTCTTGGTTCCCAATCTTG
* ***
1128518 AAAAGAATGGAGACTGTTATG-ACA-AAT-GATTTTTGTCATATTTAAGGGATGAATTTTAATTT
323 AAAAG-ATGGAGACT-AT-TGCA-AGAATCGAAGCTTGTCATATTTAAGGGATGAATTTTAATTT
* * *
1128580 TAAGGAAAATAGTGTAAAGAAAATATTTCCATGCAAAAGAAAATCGTCAAT-ATCATTTATCATA
384 TAAGGAAAATAGAGCAAAGAAAAGATTTCCATGC-AAA-AAAAT--TC-ATCATCATTTATCATA
1128644 ATGAGGAGAATGTGTTTATAGTGCCTA
444 ATGAGGAGAATGTGTTTATAGTGCCTA
* *
1128671 ATCACAAAATGATTGAAGATCATTGCTAGAATCCATTTTTGTCTCATTTGAGGCATGAACTT-GA
1 ATCACAAAATGAATGAAGATCATTACTAGAATCCATTTTTGTCTCATTTGAGGCATGAACTTAGA
*
1128735 CTTTACAAAAATTAGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGAATCAATATCGTGTATCCT
66 CTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGAATCAATATCGTGTATCCT
* * *
1128800 AATGAGAAGACTATGTTTATGGTGCCTAATGCTAAAAATAATGGGGATTAGTATGACGATTCATG
131 AATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAATAATGAGGATTAGTATGACGATTCATG
* * * *
1128865 TTTGTATTATT-TGAGTGATAAACTTTGATTCTATCAAAAGACGGTAGAAAGAAAAGCTTTTCTT
196 TTTGTATTATTATGAG-GACAAACTTTGATTCTATCAAAA-ACGGTGGAAAGAAAACCATTTCTT
1128929 G
259 G
1128930 TGACAGCAGG
Statistics
Matches: 631, Mismatches: 82, Indels: 38
0.84 0.11 0.05
Matches are distributed among these distances:
469 63 0.10
470 139 0.22
471 115 0.18
472 37 0.06
473 12 0.02
474 3 0.00
475 214 0.34
476 48 0.08
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (470 bp):
ATCACAAAATGAATGAAGATCATTACTAGAATCCATTTTTGTCTCATTTGAGGCATGAACTTAGA
CTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGAATCAATATCGTGTATCCT
AATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAATAATGAGGATTAGTATGACGATTCATG
TTTGTATTATTATGAGGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCATTTCTTGC
AACACCAAAGCATCAATGCCATGCATCCCAATAAAGGGAATGTTTCTTGGTTCCCAATCTTGAAA
AGATGGAGACTATTGCAAGAATCGAAGCTTGTCATATTTAAGGGATGAATTTTAATTTTAAGGAA
AATAGAGCAAAGAAAAGATTTCCATGCAAAAAAATTCATCATCATTTATCATAATGAGGAGAATG
TGTTTATAGTGCCTA
Found at i:1130510 original size:159 final size:157
Alignment explanation
Indices: 1130037--1130521 Score: 455
Period size: 159 Copynumber: 3.1 Consensus size: 157
1130027 TCCCAATCTT
* * * * *
1130037 GAAAAGAATGGAGAGTATTATGGCAATTGATTCTGGTCATATTTAAGGGATAAACTTTGATTTTA
1 GAAAAGAATAGAGACTATTATGACAATCGATTCTTGTCATATTTAAGGGATAAACTTTGATTTTA
* * * *
1130102 TGGAAATAGGGCAAAGAAAAGATTTT-AATGCACAAGAAAAACATCAATATCATTTATCCTAATG
66 TGGAAATAGGTCAATGAAAAGATTTTCAA-GCAAAAGAAAAACATCAATATCATTCATCCTAATG
1130166 AGGAGAATGTGTTTATGGTGCCTAATCA
130 AGGAGAATGTGTTTATGGTGCCTAATCA
* * ** * *
1130194 GAAAAGAATA-AGGATTAGTATGAGCCTTC-ATTGTTGTCTTATTTAAGAGGA-AAACTTTGATT
1 GAAAAGAATAGA-GACTATTATGA-CAATCGATTCTTGTCATATTTAAG-GGATAAACTTTGATT
* * * * * ** * * ** * * * *
1130256 CTAT-AAAAAATGGTGGAAAT-AAAAGTTTTTCTTGCGACACCAAAGCATCAATGTCATGCATTC
63 TTATGGAAATA-GGT--CAATGAAAAGATTTTCAAGCAAAAGAAAAACATCAATATCATTCATCC
* * *
1130319 TAATGAAGG-GAATGTATTCT-TGGTTCCCAATCA
125 TAATG-AGGAGAATGTGTT-TATGGTGCCTAATCA
* * * *
1130352 TGAAAAGATTAGAGACTATTATGATAATCGATTCTTGACATATTTAAGGGATGAACTTTGATTTT
1 -GAAAAGAATAGAGACTATTATGACAATCGATTCTTGTCATATTTAAGGGATAAACTTTGATTTT
*
1130417 ATGGGAAATAGGTCAATGAAAAGATTTTCAAGCAAAAGAAAAACTTCAATATCATTCATCCTAAT
65 AT-GGAAATAGGTCAATGAAAAGATTTTCAAGCAAAAGAAAAACATCAATATCATTCATCCTAAT
*
1130482 GAGGAGAATGTGTTTATAGTGCCTAATCA
129 GAGGAGAATGTGTTTATGGTGCCTAATCA
1130511 GAAAATGAATA
1 GAAAA-GAATA
1130522 AAAATCCTTA
Statistics
Matches: 246, Mismatches: 63, Indels: 36
0.71 0.18 0.10
Matches are distributed among these distances:
156 5 0.02
157 48 0.20
158 75 0.30
159 110 0.45
160 4 0.02
161 4 0.02
ACGTcount: A:0.38, C:0.11, G:0.19, T:0.31
Consensus pattern (157 bp):
GAAAAGAATAGAGACTATTATGACAATCGATTCTTGTCATATTTAAGGGATAAACTTTGATTTTA
TGGAAATAGGTCAATGAAAAGATTTTCAAGCAAAAGAAAAACATCAATATCATTCATCCTAATGA
GGAGAATGTGTTTATGGTGCCTAATCA
Found at i:1130892 original size:690 final size:684
Alignment explanation
Indices: 1129398--1131454 Score: 1931
Period size: 690 Copynumber: 3.0 Consensus size: 684
1129388 AAGATGCACG
* * ** ** *
1129398 AACTTAGACTTTGCAAAAATTAGTGGGAAGAAAGCCTTTTTTGCAAAATGAAAGTCTCAATATCG
1 AACTTAGACTATGCAAAAATTGGCAGGAAGAAAGCCTTTTTTGCAAAACAAAAGTATCAATATCG
* * * *
1129463 TGTATCCTTATGAGAAGACTTTGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTGGTATGA-
66 TGTTTCCTTATGAG-AGACTTTGTTTATGGTGCCTAATCCTAGAAAGAATAGGGATTAGTATGAG
* ** * * * *
1129527 CTATTCA-TGTT-TGCATTATTTAAGAGTCAAATTTTGATTCCATCAAAAATGGTGG-ACTGAGA
130 C-CTTCATTGTTGT-C-TTATTTAAGAGGAAAACTTTGATTCTATCAAAAATGGTGGAAAT-AAA
** * * * * * *
1129589 AGCTTTTCTTATGACCCCAAAGCTTCAATGTCATGTATCCTAATGAAAGGAATGCATTTTTGGTT
191 AGCTTTTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCTTGGTT
* *
1129654 CCCAATCTTGAAAAGAATGGAGACTGTTTTGACAATCGATCCTTGTCATATTTAAGGAAAGAATT
256 CCCAATCTTGAAAAGAATGGAGACTGTTATGACAATCGATCCTTGTCATATTTAAGGAATGAATT
* * * * * *
1129719 TTGCTTTTAAGGAAAATTGGGCAATGAAAAGATTTCCATGTAAAAGAAAATCATCATTATCA-TC
321 TTGATTTTAAGGAAAATAGGGCAATGAAAAGATTTTCATGCAAAAGAAAAAC-TCAATATCATTC
* *
1129783 AATCCTAATGAGGAAAATGTGTTTATAATGCCTAATCTCAAAATGAATGAAGATCATTACTAGAA
385 -ATCCTAATGAGGAAAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAA
* * *
1129848 TCCATGTTTGTCTCATTGGATGCATA-AACTTAGACTTTACAAATATTGGTGGGAAAAAGGCCTT
449 TCCATGTTTGTCTCATTTGAGGCA-AGAACTTAGACTTTACAAAAATTGGTGGGAAAAA-GCCTT
* * *
1129912 TCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAG-CTATGTTTATGGTGCCTAAT
512 TCTTGCAAAACCAAATCATCAATATC-TGTATTCTAAAGAGAAGACTATGTTTATGGTGCCTAAT
* * * * * * * * * ** *
1129976 ACTAAAAATAGTGGGGATTAGTACGATGATTCTTGGAAATGTATTCTT-GGTTCCCAA-TCTTGA
576 -CCAAAAAGAATGGGGATTAGTATGATTATTCATGG--TTGTCTTATTAGG-AACAAACT-TTGA
* * * * ** * * * * *
1130039 ----A-AAGAATGGAGAGTATTATGGCAA-TTGATTCTGGT-CATATTTAAGGGATA
636 TTCTACAAAAAT--AGTGCA--AAGAAAAGTT-TTTCT--TACACA-TGAAGGCAAA
* * * * * * * * * **
1130089 AACTTTGATTTTATGGAAATA-GGGCA--AAGAAAAG-ATTTTAATGCACAAGAAAAACATCAAT
1 AACTTAGA--CTATGCAAAAATTGGCAGGAAG-AAAGCCTTTT-TTGCAAAACAAAAGTATCAAT
* * * * *
1130150 ATCAT-TTATCCTAATGAGGAGAATGTGTTTATGGTGCCTAAT-C-AGAAAAGAATAAGGATTAG
62 ATCGTGTT-TCCTTATGA-GAGACTTTGTTTATGGTGCCTAATCCTAG-AAAGAATAGGGATTAG
*
1130212 TATGAGCCTTCATTGTTGTCTTATTTAAGAGGAAAACTTTGATTCTATAAAAAATGGTGGAAATA
124 TATGAGCCTTCATTGTTGTCTTATTTAAGAGGAAAACTTTGATTCTATCAAAAATGGTGGAAATA
* *
1130277 AAAGTTTTTCTTGCGACACCAAAGCATCAATGTCATGCATTCTAATGAAGGGAATGTATTCTTGG
189 AAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCTTGG
* * * * * * * *
1130342 TTCCCAATCATGAAAAGATTAGAGACTATTATGATAATCGATTCTTGACATATTTAAGGGATGAA
254 TTCCCAATCTTGAAAAGAATGGAGACTGTTATGACAATCGATCCTTGTCATATTTAAGGAATGAA
* * * * *
1130407 CTTTGATTTTATGGGAAATAGGTCAATGAAAAGATTTTCAAGCAAAAGAAAAACTTCAATATCAT
319 TTTTGATTTTAAGGAAAATAGGGCAATGAAAAGATTTTCATGCAAAAGAAAAAC-TCAATATCAT
* * * * *
1130472 TCATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAGAAAATGAATAAAAATCCTTACTAGA
383 TCATCCTAATGAGGAAAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGA
* * *
1130537 TTCCATGTTTGTCTCATTTGAGGCAAGAACTTAGACTTTACAAAAATTGGTAGGAAAAAGTCTTT
448 ATCCATGTTTGTCTCATTTGAGGCAAGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGCCTTT
* * *
1130602 CTTTCGAAACCAAATCATCAATATCATGTGTTCTAAAGAGAAGACTATGTTTATGGTGCCTAATC
513 CTTGCAAAACCAAATCATCAATATC-TGTATTCTAAAGAGAAGACTATGTTTATGGTGCCTAATC
* ** * *
1130667 CAGAGAAGAATTAGGATTAGTATGATTATTAATGGTTGTCTTATATAGGAACAAGCTTTGATTCT
577 CA-AAAAGAATGGGGATTAGTATGATTATTCATGGTTGTCTTAT-TAGGAACAAACTTTGATTCT
*
1130732 ATCAAAAATAGTGCAAAGAAAAGTTTTTCTTACGACA-GCAGGCAAA
640 A-CAAAAATAGTGCAAAGAAAAGTTTTTCTTAC-ACATGAAGGCAAA
* * * * *
1130778 AACTTAGACTCTGCAAAAATTGGCAGGTAGAAAGCCTTTTTTGGAAAACCAAAGTGTCAATATCG
1 AACTTAGACTATGCAAAAATTGGCAGGAAGAAAGCCTTTTTTGCAAAACAAAAGTATCAATATCG
* * *
1130843 TGTTTCTTTATGAGATGACTTTGTTTATGGTGCCTAATCCTAGAAAGAATAGGGATGTCGCATGA
66 TGTTTCCTTATGAGA-GACTTTGTTTATGGTGCCTAATCCTAGAAAGAATAGGGAT-TAGTATGA
* * * * * * * *
1130908 GTCTTCATGGTTGTCGTATTTAAAAGGTAAACTTTGATTCTATCAGAAACGGTGGAAAGAAAAGC
129 GCCTTCATTGTTGTCTTATTTAAGAGGAAAACTTTGATTCTATCAAAAATGGTGGAAATAAAAGC
* * * * * * *
1130973 TTTTCTTGCGATAGCAAA-CATCAATGTTAGGCATCCTAATGAAGGGAATGTGTTCATGGTTTTC
194 TTTTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCTTGG-TTCC
* * * * * * *
1131037 AAAT-TTGTAAAGAATGGAGATTGTTACGACAATCGATCCTTGTCAAATTTGAGGAATAAATTTT
258 CAATCTTGAAAAGAATGGAGACTGTTATGACAATCGATCCTTGTCATATTTAAGGAATGAATTTT
* * * *
1131101 GATTTTAAGGAAAATAGGGCAATGAAAAGATTTTCATCCAAAAGAAATGA-TCAATATCTTTTAT
323 GATTTTAAGGAAAATAGGGCAATGAAAAGATTTTCATGCAAAAGAAA-AACTCAATATCATTCAT
* * *
1131165 CCTAATGAGGATAATATGTTTATAGTGCCTAATCACAAAATGAATGATGATCATTACTAGAATCC
387 CCTAATGAGGAAAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
* * *
1131230 ATGTTTGTCTCATTTGAGGCACGAACTTAGACATTGCAAAAATTGGTGGGAAGAAAGCCTTTCTT
452 ATGTTTGTCTCATTTGAGGCAAGAACTTAGACTTTACAAAAATTGGTGGGAA-AAAGCCTTTCTT
* * * * ** *
1131295 GCAAAACCAAAGT-GTCAATAT-TGTTTATCCTTACGAGAAGACTACATCTATGGTGCCTAATCC
516 GCAAAACCAAA-TCATCAATATCTG--TATTCTAAAGAGAAGACTATGTTTATGGTGCCTAATCC
* * * * * * *
1131358 TAAAAAGAACGGGGCTTGGTATGACTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCT
578 -AAAAAGAATGGGGATTAGTATGATTATTCATGGTTGTCTTA-TTAGGA-ACAAACTTTGATTCT
* * * *
1131423 ACCAAAAATGGTGGAAAAAAAAGTATTTCTTA
640 A-CAAAAATAGTGCAAAGAAAAGTTTTTCTTA
1131455 TGACCCCAAA
Statistics
Matches: 1100, Mismatches: 221, Indels: 90
0.78 0.16 0.06
Matches are distributed among these distances:
687 7 0.01
688 14 0.01
689 230 0.21
690 620 0.56
691 207 0.19
692 5 0.00
693 12 0.01
695 5 0.00
ACGTcount: A:0.35, C:0.13, G:0.19, T:0.32
Consensus pattern (684 bp):
AACTTAGACTATGCAAAAATTGGCAGGAAGAAAGCCTTTTTTGCAAAACAAAAGTATCAATATCG
TGTTTCCTTATGAGAGACTTTGTTTATGGTGCCTAATCCTAGAAAGAATAGGGATTAGTATGAGC
CTTCATTGTTGTCTTATTTAAGAGGAAAACTTTGATTCTATCAAAAATGGTGGAAATAAAAGCTT
TTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCAA
TCTTGAAAAGAATGGAGACTGTTATGACAATCGATCCTTGTCATATTTAAGGAATGAATTTTGAT
TTTAAGGAAAATAGGGCAATGAAAAGATTTTCATGCAAAAGAAAAACTCAATATCATTCATCCTA
ATGAGGAAAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
TTGTCTCATTTGAGGCAAGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGCCTTTCTTGCAAA
ACCAAATCATCAATATCTGTATTCTAAAGAGAAGACTATGTTTATGGTGCCTAATCCAAAAAGAA
TGGGGATTAGTATGATTATTCATGGTTGTCTTATTAGGAACAAACTTTGATTCTACAAAAATAGT
GCAAAGAAAAGTTTTTCTTACACATGAAGGCAAA
Found at i:1133484 original size:949 final size:947
Alignment explanation
Indices: 1130778--1136203 Score: 5933
Period size: 949 Copynumber: 5.7 Consensus size: 947
1130768 AGCAGGCAAA
* * ** * * * **
1130778 AACTTAGACTCTGCAAAAATTGGCAGGTAGAAAGCCTTTTTTG-GAAAACCAAAGTGTCAATATC
1 AACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCG-AAACCAAAGCATCAATATC
* * * * * * * *
1130842 GTGTTTCTTTATGAGATGACTTTGTTTATGGTGCCTAATCCTAGAAAGAATAGGGATGTCGCATG
65 GTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTA-AAAGAATGGGGAT-TAGTATG
* * * *
1130907 AGTCTTCATGGTTGTCGTATTTAAAAGGTAAACTTTGATTCTATCAGAAACGGTGGAAAGAAAAG
128 AGTCTTCATGGTTGTCTTATTTAAGAGGAAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAG
* * * * * * *
1130972 CTTTTCTTGCGATAGCAAA-CATCAATGTTAGGCATCCTAATGAAGGGAATGTGTTCATGGTTTT
193 CTTTTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCTTGG-TTC
* * * * * * * * * *
1131036 CAAAT-TTGTAAAGAATGGAGATTGTTACGACAATCGATCCTTGTCAAATTTGAGGAATAAATTT
257 CCAATCTTGAAAAGAATGGAGACTGTTATGAAAATCGATTCTTGTCATATTTAAGGGATGAATTT
* * * * *
1131100 TGATTTTAAGGAAAATAGGGCAATGAAAAGATTTTCATCCAAAAGAAATGATCAATATCTTTTAT
322 TGATTTTAAGGAAAATAGGG-AAAGAAAAGATTTTCATGCAAAAAAAATCATCAATATCATTTAT
* * *
1131165 CCTAATGAGGATAATATGTTTATAGTGCCTAATCACAAAATGAATGATGATCATTACTAGAATCC
386 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
* * *
1131230 ATGTTTGTCTCATTTGAGGCACGAACTTAGACATTGCAAAAATTGGTGGGAAGAAAGCCTTTCTT
451 ATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTT
** * * * * ** *
1131295 GCAAAACCAAAGTGTCAATATTGTTTATCCTTACGAGAAGACTACATCTATGGTGCCTAATCCTA
516 GCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT-
* * * * *
1131360 AAAAGAACGGGGCTTGGTATGACT-ATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTA
580 AAAAGAATGGGGATTAGTATGA-TGATTCATGTTTGTCTTAATTAAGAGACAAACTTTGATTCTA
* * * ** * * *
1131424 CCAAAAATGGTGGAAAAAAAAGT-ATTTCTTATGACCCCAAAGCATCAATGTCATGTATCTTAAC
644 TCAAAAACGGTGGAAAGAAAA-TCATTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT
* * * * * * * *
1131488 GAAAGGAATGCGTTTTTGGTTCCCAATCTTGAAATGATTGGAAACTGTTACAAGAATCAATGCTT
708 GAAGGGAATGTGTTCTT-GTTCCCAATCTTGAAAAGAATGGAGACTATTACAAGAATCAATCCTT
* * * * * *
1131553 GCCTTATTTCAA-GGATGAATTTTGATTTTATGGAATATAGGGCAAAGAAAAGATGTCCAAC-CA
772 GTCATATTT-AAGGGATGAATTTTGATTTTAAGGAAAATAGGACAAAGAAAAGATTTCC-ACGCA
* * *
1131616 AAAGAAAATCATCAGTATCATTTATCATATTTAGGAGAATGTGTTTATAGTGCCTAATCACAAAA
835 AAAGAAAATCATCAATATCATTTATCATAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAA
* * * *
1131681 TAAATGAAGATCCTTACTAGTACCCATGTTTGTCTCATTTGAGGCATG
900 TGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATG
* *** *
1131729 AACTTAGACTTTTCAAAAATTGGCATGAAAAAAGCCTTTAATTGC-AAAGCCAAAGCATCAATAT
1 AACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTT-CTTGCGAAA-CCAAAGCATCAATAT
* * * * * * *
1131793 CATGTATCCTAATGAGAAGACTCTGTTTATAGAGCCTAATGCTAAAA-ATATGGGGCTTTAGTAC
64 CGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAGA-ATGGGG-ATTAGTAT
* * * *
1131857 GA-TGATTCA-GGTTTGTGTTATTTGAGA-GAAAACTTTGATTCTATCAAAAAACAGTGGAAAGA
127 GAGT-CTTCATGG-TTGTCTTATTTAAGAGGAAAACTTTGATTCTATC-AAAAACGGTGGAAAGA
* * * * * * * *
1131919 AAACCATTTCTTGTGACACCAAAGCTTCAATGCCATGTATCCTAATGGAGGGAAAGT-TTCTTGG
189 AAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCTTGG
** * * * *
1131983 TTCCCAATCTTGAAAAGGGTGGAGACT-AT-TGCAAGAATCAATGT-TTTTCATATTTAAGGGTT
254 TTCCCAATCTTGAAAAGAATGGAGACTGTTATG-AA-AATCGAT-TCTTGTCATATTTAAGGGAT
* *
1132045 GAATTTTTATTTTAAGGAAAATAGAGCAAAGAAAAGATTTTTC-TGCAAAAAAAATCATCAATAT
316 GAATTTTGATTTTAAGGAAAATAG-GGAAAGAAAAGA-TTTTCATGCAAAAAAAATCATCAATAT
* * * * *
1132109 CATTTATCCAAATAAGGAGAATGTATTTTTTGTGCCTAATCACAAAATGAATGAAGATCATTACT
379 CATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACT
* *
1132174 GGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCAAAAATTGGTGGGAAAAAAGC
444 AGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGC
* * * * *
1132239 TTTTCTCGCAAAACCAAAGCATCAATATCGTGTATCCTAATAATAA-ACTATGTTCATGGTGCCT
509 CTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCT
* * * * * * * *
1132303 AATGCTAAAA-ATAGTAGGGATTAGTAGGATGATTCATGTTTATGTTATTTCAGAAACAAACTTT
574 AATCCTAAAAGA-A-TGGGGATTAGTATGATGATTCATGTTTGTCTTAATTAAGAGACAAACTTT
* * * * * * *
1132367 GATTCTATCAAAAAACGGGGGAAAGAAAACCATTTCTGGTGATACCAAAGCATCAATGCCATTTA
637 GATTCTATC-AAAAACGGTGGAAAGAAAATCATTTCTTGCGACACCAAAGCATCAATGTCATGTA
* * * * * * ** *
1132432 TACTAATGAAGGGAACGTGTTCTTAGTTCCCAATCCTGAAAAGAATGAAGATTGTTATGACAATC
701 TCCTAATGAAGGGAATGTGTTCTT-GTTCCCAATCTTGAAAAGAATGGAGACTATTACAAGAATC
* * * * * ** **
1132497 GATTCTTATCATATTTAAGGAATGAATTTTGATTTTAAGGAAAATAGGACAAAGATAATTTTTTT
765 AATCCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGACAAAGAAAAGATTTCC
* * * * *
1132562 ACGCAAAAGAAAATCATAAATATCATTTATCGTAACGAGGAGAATGTATTTATTGTGCCTAATCA
830 ACGCAAAAGAAAATCATCAATATCATTTATCATAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * * * *** * *
1132627 CACAATGAATGAAAATCCTTGCTTCTATTCATGTTTGTCTCATTTAAGGCATG
895 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATG
* * * *
1132680 ATCTTAGACTTCACAAAAATTGGTGAGAAAAAAGTCTTTCTTGCGAAACCAAAGCATCAATATCG
1 AACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCG
* * * * * * *
1132745 TGTCTCCTAATGAGAACACTATGTCTATCGTGCCTAAACCTAAGAAGAATGGGGATTCGTATGGG
66 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAA-AAGAATGGGGATTAGTATGAG
* * *
1132810 TCTTCATGGTTGTCTTATTTAAGAGGAAAACTTTGATTCTATCAAAAATGGTGGAAATAAAAGTT
130 TCTTCATGGTTGTCTTATTTAAGAGGAAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCT
* * *
1132875 TTTCTTGCAACACCAAGGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCTTAGTTCCCA
195 TTTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCA
* *
1132940 ATCTTGAAAAGAATGGAGACTGTTATGACAAAT-GATTCTTGTCACATTTAAGGGATGAATTTTA
260 ATCTTGAAAAGAATGGAGACTGTTATGA-AAATCGATTCTTGTCATATTTAAGGGATGAATTTTG
* * * * * *
1133004 ATTTTAAGGATAATAGGGTAA-AAAATATTTTCATGTAAAAAAAATCATGAATATCATTTATCAT
324 ATTTTAAGGAAAATAGGGAAAGAAAAGATTTTCATGCAAAAAAAATCATCAATATCATTTATCCT
* * *
1133068 AATGAGGAGAATGTGTTTATAGTGGCTAATCAGAAAATGAATGAAGATCATTACTAGAATCCTTG
389 AATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* * *
1133133 TTTGTCTTATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTGCTTGCA
454 TTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCA
* * *
1133198 AAACCAAAGCGTCAATATCGTGTATCCTAATGAGAAGACTATGTTTGTGGTGCCTAATGCTAAAA
519 AAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAA
* * * * *
1133263 GTAATGGGGATTAGTATGACGATTCATGTTTG-CATTAATTGAGAGACAAATTTTGGTTCGATCA
584 G-AATGGGGATTAGTATGATGATTCATGTTTGTC-TTAATTAAGAGACAAACTTTGATTCTATC-
* * *
1133327 AAAAATGGTGGAAAGAAAATCATTTCTTGTGACACCAAAGCATCAATGCCATGTATCCTAATGAA
646 AAAAACGGTGGAAAGAAAATCATTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAA
* * * ** * *
1133392 GGGAATGT-TTCTTGCTTCCTAATCATAAAAAGGGTGGAGACTATTGCAAGAATCTATCCTTGTC
711 GGGAATGTGTTCTTG-TTCCCAATCTTGAAAAGAATGGAGACTATTACAAGAATCAATCCTTGTC
* * * * *
1133456 ATATTTAAGGGTTGAATTTTTATTTTAAGGGAAATAGAGA-AAAGAAAAGACTTCCATGCAAAA-
775 ATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAG-GACAAAGAAAAGATTTCCACGCAAAAG
* * * * * * *
1133519 AAAAACATCAATATCATTTAT-TTAGATAAGAAGAATGTGTTTTTTGTGCCTAATCACAAAAAGA
839 AAAATCATCAATATCATTTATCATA-ATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
* *
1133583 ATGAAGATCATTTCTGGAATCCATGTTTGTCTCATTTGAGGCATG
903 ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATG
* * * * * *
1133628 AACTCAGCCTTTGCAAAAATTGGTGGGAAATAA-CCTTTTCTCGCAAAACCAAAGCATCAATATC
1 AACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCC-TTTCTTGCGAAACCAAAGCATCAATATC
* * * *
1133692 ATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATGCTAAAA-ATATTGGGCATTAGTACG
65 GTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAGA-A-TGGGGATTAGTATG
* * * *
1133756 ACG-ATTCA-GGTTTGTGTTATTTGAGA-GAAAACTTTGATTCTGTCAAAAAACGGTGGAAAGAA
128 A-GTCTTCATGG-TTGTCTTATTTAAGAGGAAAACTTTGATTCTATC-AAAAACGGTGGAAAGAA
* * * * * *
1133818 AACCATTTCTTGTGACACCAAAGCATCAATGCCATGTATCCTAATGAAGGGAATGT-TTTTTGGT
190 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCTTGGT
* ** * * * * * * * *
1133882 TTCCAATCTTGAAAAGGGTGGAGACTATTA-CAAGAATCGGTGCTCGTGATATTGAAGGGTTGAA
255 TCCCAATCTTGAAAAGAATGGAGACTGTTATGAA-AATCGATTCTTGTCATATTTAAGGGATGAA
* * * * *
1133946 TTTTTATTTTAAGGAAAATAGAGCAATGAAAAGATTTCCACGCAAAAAAAATCATCAATATCATT
319 TTTTGATTTTAAGGAAAATAG-GGAAAGAAAAGATTTTCATGCAAAAAAAATCATCAATATCATT
* *
1134011 TATCCTAATGAGGAGAATGTGTTTATTGTGCCTAATCACAAAATGAATGAAGATCATTACT-GGA
383 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAA
* * *
1134075 TCCATGTTCGTCTCATTTGAGGCACGAACTTAGACTTTGCAAAAATTGGTGGGAAGAAAGCCTTT
448 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTT
* * * *
1134140 CTTGCGAAACC-AAGGATCAATATCGTGTATCCTAATGAGAAGACTAAGCTTATGGTGCCTAATC
513 CTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC
* * * * *
1134204 CTGAAAAGAATAGGGATTAGCATGA-GTCTTCATGGTTGTCTTATTTAAGAGGA-AAACTTTGAT
578 CT-AAAAGAATGGGGATTAGTATGATG-ATTCATGTTTGTCTTAATTAAGA-GACAAACTTTGAT
* * * * * *
1134267 TCTATCAAAAATGGT-GAAATAAAAGT-TTTTCTTGCGACACTAAGGCATCAATGTCATGCATCC
640 TCTATCAAAAACGGTGGAAAGAAAA-TCATTTCTTGCGACACCAAAGCATCAATGTCATGTATCC
* *
1134330 TAATGAAGGGAATGTATTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTATTATCAA-AAACAA
704 TAATGAAGGGAATGTGTTCTT-GTTCCCAATCTTGAAAAGAATGGAGACTATTA-CAAGAATCAA
** * * * *
1134394 TTATTGTCATATTTAAGGGATGAATTTTAATTTTAAGGAAAGTAAGG-TAAAGAAAATATTTCCA
767 TCCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAAT-AGGACAAAGAAAAGATTTCCA
*
1134458 CGCAAAAGAAAATCATGAATATCATTTATCATAATGAGGAGAATGTGTTTATAGTGCCTAATCAC
831 CGCAAAAGAAAATCATCAATATCATTTATCATAATGAGGAGAATGTGTTTATAGTGCCTAATCAC
* *
1134523 AAAATGAATGAAGATCATTACTAGAATCCTTGTTTGTCTTATTTGAGGCATG
896 AAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATG
* * *
1134575 AACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACC-AAGGATCAATATTG
1 AACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCG
* * *
1134639 TGTATCCTAATGAGAAGACTAAGCTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGCATGAG
66 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT-AAAAGAATGGGGATTAGTATGAG
* * * * *
1134704 TCTTCATGGTTGTCTTATTTAAGAGGAAAACTTTGATTCTATCAAAAATGGAGAAAATAAAAGTT
130 TCTTCATGGTTGTCTTATTTAAGAGGAAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCT
* * *
1134769 TTTCTTTCGACACCAAAGCATCAACGTCATGCATCCTAAT-AAGGGGAATGTATTCTTGGTTCCT
195 TTTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAA-GGGAATGTATTCTTGGTTCCC
* * * ** * *
1134833 AATCTTGAAAGGACTGGAGACTGTTATGACAATTAATTCTTATCATATTTAAGGGATGAACTTTG
259 AATCTTGAAAAGAATGGAGACTGTTATGAAAATCGATTCTTGTCATATTTAAGGGATGAATTTTG
* * *
1134898 ATTTTATGGGAAATAGGGCAAAGAAAAGATTTCCATGCAGAAGAAAAA-CATCAATATCATTTAT
324 ATTTTAAGGAAAATAGGG-AAAGAAAAGATTTTCATGCA-AA-AAAAATCATCAATATCATTTAT
* * * *
1134962 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAAAAAATGAATGAAAATCCTTACTAGATTCC
386 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
* * * *
1135027 TTGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTTGTTGG-AAAAAGCCTTTCTT
451 ATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTT
* * * * * * * * *
1135091 TCGAAACCAGATCATCAATATCATGTATCTTAAAGAGAAGACAATGTTTATGGTGCCTAATCCAG
516 GCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCC-T
** * * *
1135156 AAAAGAATGGGGATTAGTATGATTTTTCATGGTTCTCTTACA-TAAGAGACAAACTTTGATTTTA
580 AAAAGAATGGGGATTAGTATGATGATTCATGTTTGTCTTA-ATTAAGAGACAAACTTTGATTCTA
* * * * * *
1135220 TCAAAGACGGTGGAAAGAAAA-GATTTTCTTGCAACAGCAAA-CATTAATGTCATGCATCCTAAT
644 TCAAAAACGGTGGAAAGAAAATCA-TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT
* * ** ** * *
1135283 AAAGGGAATGTGTTCTAGTTCCCAATCTTGAAAAGAATGGAGACTATTATGACCATCGATCCTCG
708 GAAGGGAATGTGTTCTTGTTCCCAATCTTGAAAAGAATGGAGACTATTACAAGAATCAATCCTTG
** * * * * *
1135348 TCATATTTAACTGTTGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAGAA
773 TCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGACAAAGAAAAGATTTCCACGCAAAA
* * *
1135413 GAAAATCATCATTATCATTTATCCTAATGAGGAGAATGTGTTTATGGTGCCTAATCACAAAATGA
838 GAAAATCATCAATATCATTTATCATAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
*
1135478 ATGAAGATCATTACTAGAATCCATGTTTGTCTAATTTGAGGCATG
903 ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATG
* * * * ** *
1135523 AACTTAGACTCTGCAAAAATTGGTGGGTAGAAAGCCTTTCTTG-GAAAACCAAAGTGTCAATATT
1 AACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCG-AAACCAAAGCATCAATATC
* * * *
1135587 GTGTGTCCTTATGAGAGGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATAA
65 GTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT-AAAAGAATGGGGATTAGTATGA
* * * *
1135652 G-CGTTCGTGGTTGTCTTATTTAAGAGGAAAACCTTGATTCTATCAAAAATGGTGGAAATAAAAG
129 GTC-TTCATGGTTGTCTTATTTAAGAGGAAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAG
* * *
1135716 TTTTTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTAGTCTTAGTTCC
193 CTTTTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCTTGGTT-C
* * * * *
1135781 CCAA-CATGAAAAGATTAGAGACTGTTATGATAATCGATTCTTGAT-ATATTTAAGGGATGAACT
257 CCAATCTTGAAAAGAATGGAGACTGTTATGAAAATCGATTCTTG-TCATATTTAAGGGATGAATT
* * ** * * * * *
1135844 TTGATTTTATGGGAAATAGGTCCAAGAAAAGATTTTAATGCAAAATAAAAACTTCAATATCGTTC
321 TTGATTTTAAGGAAAATAGG-GAAAGAAAAGATTTTCATGCAAAA-AAAATCATCAATATCATTT
* * * *
1135909 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAGAAAATGAATGAAAATCCTTACTAGATT
384 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* *
1135974 CCATGTTTGTCTCATTTGAGGCAAGAACTTAGACTTTACAAAAATTGGTAGG-AAAAAGCCTTTC
449 CCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTC
* * * * * * *
1136038 TTTCGAAACCAAATCATCAATATCATGTGTGCTAAAGAGAAGACTATGTTTATGGTGCCTAATCC
514 TTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCC
* * * *
1136103 -AGAGAAGAATGAGGATTAGTATGATTATTCATGGTTGTCTT-ATATAGGA-ACAAACTTTGATT
579 TA-A-AAGAATGGGGATTAGTATGATGATTCATGTTTGTCTTAAT-TAAGAGACAAACTTTGATT
* *
1136165 CTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACA
641 CTATCAAAAACGGTGGAAAGAAAATCATTTCTTGCGACA
1136204 GCAGGCATGC
Statistics
Matches: 3772, Mismatches: 603, Indels: 203
0.82 0.13 0.04
Matches are distributed among these distances:
945 58 0.02
946 245 0.06
947 448 0.12
948 747 0.20
949 1061 0.28
950 408 0.11
951 711 0.19
952 91 0.02
953 3 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (947 bp):
AACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCG
TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAGAATGGGGATTAGTATGAGT
CTTCATGGTTGTCTTATTTAAGAGGAAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTT
TTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCAA
TCTTGAAAAGAATGGAGACTGTTATGAAAATCGATTCTTGTCATATTTAAGGGATGAATTTTGAT
TTTAAGGAAAATAGGGAAAGAAAAGATTTTCATGCAAAAAAAATCATCAATATCATTTATCCTAA
TGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTT
TGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAA
ACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAGA
ATGGGGATTAGTATGATGATTCATGTTTGTCTTAATTAAGAGACAAACTTTGATTCTATCAAAAA
CGGTGGAAAGAAAATCATTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAA
TGTGTTCTTGTTCCCAATCTTGAAAAGAATGGAGACTATTACAAGAATCAATCCTTGTCATATTT
AAGGGATGAATTTTGATTTTAAGGAAAATAGGACAAAGAAAAGATTTCCACGCAAAAGAAAATCA
TCAATATCATTTATCATAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGAT
CATTACTAGAATCCATGTTTGTCTCATTTGAGGCATG
Found at i:1133993 original size:474 final size:473
Alignment explanation
Indices: 1130778--1136203 Score: 5703
Period size: 475 Copynumber: 11.4 Consensus size: 473
1130768 AGCAGGCAAA
* * * * * * **
1130778 AACTTAGACTCTGCAAAAATTGGCAGGTAGAAAGCCTTTT-TTGGAAAACCAAAGTGTCAATATC
1 AACTTAGACTTTACAAAAATTGG-TGGGAAAAAGCCTTTTCTTGCAAAACCAAAGCATCAATATC
* * * * * * * * *
1130842 GTGTTTCTTTATGAGATGACTTTGTTTATGGTGCCTAATCCTAGAAAGAATAGGGATGTCGCATG
65 GTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGAT-TAGTATG
* * * * *
1130907 A-GTCTTCATGGTTGTCGTATTTAAAAGGTAAACTTTGATTCTATCAGAAACGGTGGAAAGAAAA
129 ACG-ATTCA-GGTTGTCTTATTTAAGA-GAAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAA
* * * * * * * *
1130971 GCTTTTCTTGCGATAGCAAA-CATCAATGTTAGGCATCCTAATGAAGGGAATGTGTTCATGGTTT
191 GCATTTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCTTAG-TT
* * * * * * * * * *
1131035 TCAAAT-TTGTAAAGAATGGAGATTGTTACGACAATCGATCCTTGTCAAATTTGAGGAATAAATT
255 CCCAATCTTGAAAAGAATGGAGACTGTTACAACAATCGATTCTTGTCATATTTAAGGGATGAATT
* * * * * *
1131099 TTGATTTTAAGGAAAATAGGGCAATGAAAAGATTTTCATCCAAAAGAAATGATCAATATCTTTTA
320 TTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTTA
* * *
1131164 TCCTAATGAGGATAATATGTTTATAGTGCCTAATCACAAAATGAATGATGATCATTACTAGAATC
385 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC
*
1131229 CATGTTTGTCTCATTTGAGGCACG
450 CATGTTTGTCTCATTTGAGGCATG
* * ** *
1131253 AACTTAGACATTGCAAAAATTGGTGGGAAGAAAGCC-TTTCTTGCAAAACCAAAGTGTCAATATT
1 AACTTAGACTTTACAAAAATTGGTGGGAA-AAAGCCTTTTCTTGCAAAACCAAAGCATCAATATC
* * * ** * * * *
1131317 GTTTATCCTTACGAGAAGACTACATCTATGGTGCCTAATCCTAAAAAGAACGGGGCTTGGTATGA
65 GTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGA
* * * * * *
1131382 CTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTACCAAAAATGGTGGAAAAAAAAGT
130 CGATTCA-GGTTGTCTTATTTAAGAGA-AAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGC
** * * * * * ** * *
1131447 ATTTCTTATGACCCCAAAGCATCAATGTCATGTATCTTAACGAAAGGAATGCGTTTTTGGTTCCC
193 ATTTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCTTAGTTCCC
* * * * * * * *
1131512 AATCTTGAAATGATTGGAAACTGTTACAAGAATCAATGCTTGCCTTATTTCAA-GGATGAATTTT
258 AATCTTGAAAAGAATGGAGACTGTTACAACAATCGATTCTTGTCATATTT-AAGGGATGAATTTT
* * * ** *
1131576 GATTTTATGGAATATAGGGCAAAGAAAAGATGTCCAACCAAAAGAAAATCATCAGTATCATTTAT
322 GATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAA-AAAATCATCAATATCATTTAT
* * * * * * *
1131641 CATATTTAGGAGAATGTGTTTATAGTGCCTAATCACAAAATAAATGAAGATCCTTACTAGTACCC
386 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
1131706 ATGTTTGTCTCATTTGAGGCATG
451 ATGTTTGTCTCATTTGAGGCATG
* * ** *
1131729 AACTTAGACTTTTCAAAAATTGGCAT-GAAAAAAGCCTTTAATTGCAAAGCCAAAGCATCAATAT
1 AACTTAGACTTTACAAAAATTGG--TGGGAAAAAGCCTTTTCTTGCAAAACCAAAGCATCAATAT
* * * * * * * *
1131793 CATGTATCCTAATGAGAAGACTCTGTTTATAGAGCCTAATGCTAAAAA-TATGGGGCTTTAGTAC
64 CGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGG-ATTAGTAT
* * * *
1131857 GATGATTCAGGTTTGTGTTATTTGAGAGAAAACTTTGATTCTATCAAAAAACAGTGGAAAGAAAA
128 GACGATTCAGG-TTGTCTTATTTAAGAGAAAACTTTGATTCTATC-AAAAACGGTGGAAAGAAAA
* * * * * * * *
1131922 CCATTTCTTGTGACACCAAAGCTTCAATGCCATGTATCCTAATGGAGGGAAAGT-TTCTTGGTTC
191 GCATTTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCTTAGTTC
** * * * * * *
1131986 CCAATCTTGAAAAGGGTGGAGACTATTGCAAGAATCAATGT-TTTTCATATTTAAGGGTTGAATT
256 CCAATCTTGAAAAGAATGGAGACTGTTACAACAATCGAT-TCTTGTCATATTTAAGGGATGAATT
* * *
1132050 TTTATTTTAAGGAAAATAGAGCAAAGAAAAGATTTTTC-TGCAAAAAAAATCATCAATATCATTT
320 TTGATTTTAAGGAAAATAGGGCAAAGAAAAGA-TTTCCATGCAAAAAAAATCATCAATATCATTT
* * * * * *
1132114 ATCCAAATAAGGAGAATGTATTTTTTGTGCCTAATCACAAAATGAATGAAGATCATTACTGGAAT
384 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
*
1132179 CCATGTTTGTCTCATTTGAGGCACG
449 CCATGTTTGTCTCATTTGAGGCATG
* *
1132204 AACTTAGACTTTGCAAAAATTGGTGGGAAAAAAG-CTTTTCTCGCAAAACCAAAGCATCAATATC
1 AACTTAGACTTTACAAAAATTGGTGGG-AAAAAGCCTTTTCTTGCAAAACCAAAGCATCAATATC
* * * * * * * *
1132268 GTGTATCCTAATAATAA-ACTATGTTCATGGTGCCTAATGCTAAAAATAGTAGGGATTAGTAGGA
65 GTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGA
* * * * * * * *
1132332 TGATTCATGTTTATGTTATTTCAGAAACAAACTTTGATTCTATCAAAAAACGGGGGAAAGAAAAC
130 CGATTCA-GGTTGTCTTATTTAAGAGA-AAACTTTGATTCTATC-AAAAACGGTGGAAAGAAAAG
* * * * ** * * *
1132397 CATTTCTGGTGATACCAAAGCATCAATGCCATTTATACTAATGAAGGGAACGTGTTCTTAGTTCC
192 CATTTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCTTAGTTCC
* * * ** * *
1132462 CAATCCTGAAAAGAATGAAGATTGTTATGACAATCGATTCTTATCATATTTAAGGAATGAATTTT
257 CAATCTTGAAAAGAATGGAGACTGTTACAACAATCGATTCTTGTCATATTTAAGGGATGAATTTT
* * ** ** * *
1132527 GATTTTAAGGAAAATAGGACAAAGATAATTTTTTTACGCAAAAGAAAATCATAAATATCATTTAT
322 GATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAA-AAAATCATCAATATCATTTAT
* * * * * * * * *** *
1132592 CGTAACGAGGAGAATGTATTTATTGTGCCTAATCACACAATGAATGAAAATCCTTGCTTCTATTC
386 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
*
1132657 ATGTTTGTCTCATTTAAGGCATG
451 ATGTTTGTCTCATTTGAGGCATG
* * * * *
1132680 ATCTTAGACTTCACAAAAATTGGTGAGAAAAAAGTC-TTTCTTGCGAAACCAAAGCATCAATATC
1 AACTTAGACTTTACAAAAATTGGTG-GGAAAAAGCCTTTTCTTGCAAAACCAAAGCATCAATATC
* * * * * * *
1132744 GTGTCTCCTAATGAGAACACTATGTCTATCGTGCCTAAACCTAAGAAGAATGGGGATTCGTATG-
65 GTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGA
* * * *
1132808 GGTCTTCATGGTTGTCTTATTTAAGAGGAAAACTTTGATTCTATCAAAAATGGTGGAAATAAAAG
130 CG-ATTCA-GGTTGTCTTATTTAAGA-GAAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAG
** * *
1132873 TTTTTCTTGCAACACCAAGGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCTTAGTTCC
192 CATTTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCTTAGTTCC
** *
1132938 CAATCTTGAAAAGAATGGAGACTGTTATGACAAAT-GATTCTTGTCACATTTAAGGGATGAATTT
257 CAATCTTGAAAAGAATGGAGACTGTTACAAC-AATCGATTCTTGTCATATTTAAGGGATGAATTT
* * * * * * *
1133002 TAATTTTAAGGATAATAGGG-TAA-AAAATATTTTCATGTAAAAAAAATCATGAATATCATTTAT
321 TGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTTAT
* * *
1133065 CATAATGAGGAGAATGTGTTTATAGTGGCTAATCAGAAAATGAATGAAGATCATTACTAGAATCC
386 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
* *
1133130 TTGTTTGTCTTATTTGAGGCATG
451 ATGTTTGTCTCATTTGAGGCATG
* *
1133153 AACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCC-TTGCTTGCAAAACCAAAGCGTCAATATC
1 AACTTAGACTTTACAAAAATTGGTGGG-AAAAAGCCTTTTCTTGCAAAACCAAAGCATCAATATC
* *
1133217 GTGTATCCTAATGAGAAGACTATGTTTGTGGTGCCTAATGCT-AAAAGTAATGGGGATTAGTATG
65 GTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAG-AATGGGGATTAGTATG
* * * * * * *
1133281 ACGATTCATGTT-TGCATTAATTGAGAGACAAATTTTGGTTCGATCAAAAAATGGTGGAAAGAAA
129 ACGATTCAGGTTGT-C-TTATTTAAGAGA-AAACTTTGATTCTATC-AAAAACGGTGGAAAGAAA
* * * *
1133345 ATCATTTCTTGTGACACCAAAGCATCAATGCCATGTATCCTAATGAAGGGAATGT-TTCTT-GCT
190 AGCATTTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCTTAG-T
* * * ** * * * * * *
1133408 TCCTAATCATAAAAAGGGTGGAGACTATTGCAAGAATCTATCCTTGTCATATTTAAGGGTTGAAT
254 TCCCAATCTTGAAAAGAATGGAGACTGTTACAACAATCGATTCTTGTCATATTTAAGGGATGAAT
* * * * * *
1133473 TTTTATTTTAAGGGAAATAGAGAAAAGAAAAGACTTCCATGCAAAAAAAAACATCAATATCATTT
319 TTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTT
* * * * * * * *
1133538 AT-TTAGATAAGAAGAATGTGTTTTTTGTGCCTAATCACAAAAAGAATGAAGATCATTTCTGGAA
384 ATCCTA-ATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAA
1133602 TCCATGTTTGTCTCATTTGAGGCATG
448 TCCATGTTTGTCTCATTTGAGGCATG
* * * *
1133628 AACTCAGCCTTTGCAAAAATTGGTGGGAAATAA-CCTTTTCTCGCAAAACCAAAGCATCAATATC
1 AACTTAGACTTTACAAAAATTGGTGGGAAA-AAGCCTTTTCTTGCAAAACCAAAGCATCAATATC
* * * * * *
1133692 ATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATGCTAAAAATATTGGGCATTAGTACGA
65 GTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGA
* * * *
1133757 CGATTCAGGTTTGTGTTATTTGAGAGAAAACTTTGATTCTGTCAAAAAACGGTGGAAAGAAAACC
130 CGATTCAGG-TTGTCTTATTTAAGAGAAAACTTTGATTCTATC-AAAAACGGTGGAAAGAAAAGC
* * * * * *
1133822 ATTTCTTGTGACACCAAAGCATCAATGCCATGTATCCTAATGAAGGGAATGT-TTTTTGGTTTCC
193 ATTTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCTTAGTTCCC
** * * * * * * * * *
1133886 AATCTTGAAAAGGGTGGAGACTATTACAAGAATCGGTGCTCGTGATATTGAAGGGTTGAATTTTT
258 AATCTTGAAAAGAATGGAGACTGTTACAACAATCGATTCTTGTCATATTTAAGGGATGAATTTTG
* * *
1133951 ATTTTAAGGAAAATAGAGCAATGAAAAGATTTCCACGCAAAAAAAATCATCAATATCATTTATCC
323 ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTTATCC
* *
1134016 TAATGAGGAGAATGTGTTTATTGTGCCTAATCACAAAATGAATGAAGATCATTACT-GGATCCAT
388 TAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
* *
1134080 GTTCGTCTCATTTGAGGCACG
453 GTTTGTCTCATTTGAGGCATG
* * *
1134101 AACTTAGACTTTGCAAAAATTGGTGGGAAGAAAGCC-TTTCTTGCGAAACC-AAGGATCAATATC
1 AACTTAGACTTTACAAAAATTGGTGGGAA-AAAGCCTTTTCTTGCAAAACCAAAGCATCAATATC
* * * * *
1134164 GTGTATCCTAATGAGAAGACTAAGCTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGCATGA
65 GTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGA
* * *
1134229 -GTCTTCATGGTTGTCTTATTTAAGAGGAAAACTTTGATTCTATCAAAAATGGT-GAAATAAAAG
130 CG-ATTCA-GGTTGTCTTATTTAAGA-GAAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAG
** * *
1134292 TTTTTCTTGCGACACTAAGGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCTTAGTTCC
192 CATTTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCTTAGTTCC
* * * *
1134357 CAATCTTGAAAAGAATGGAGACTATTATCAA-AAACAATTATTGTCATATTTAAGGGATGAATTT
257 CAATCTTGAAAAGAATGGAGACTGTTA-CAACAATCGATTCTTGTCATATTTAAGGGATGAATTT
* * * * * * *
1134421 TAATTTTAAGGAAAGTAAGGTAAAGAAAATATTTCCACGCAAAAGAAAATCATGAATATCATTTA
321 TGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAA-AAAATCATCAATATCATTTA
*
1134486 TCATAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC
385 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC
* *
1134551 CTTGTTTGTCTTATTTGAGGCATG
450 CATGTTTGTCTCATTTGAGGCATG
* * *
1134575 AACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCC-TTTCTTGCGAAACC-AAGGATCAATATT
1 AACTTAGACTTTACAAAAATTGGTGGGAA-AAAGCCTTTTCTTGCAAAACCAAAGCATCAATATC
* * * *
1134638 GTGTATCCTAATGAGAAGACTAAGCTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGCATGA
65 GTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGA
* * * * *
1134703 -GTCTTCATGGTTGTCTTATTTAAGAGGAAAACTTTGATTCTATCAAAAATGGAGAAAATAAAAG
130 CG-ATTCA-GGTTGTCTTATTTAAGA-GAAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAG
** * * *
1134767 TTTTTCTTTCGACACCAAAGCATCAACGTCATGCATCCTAAT-AAGGGGAATGTATTCTTGGTTC
192 CATTTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAA-GGGAATGTATTCTTAGTTC
* * * ** ** * *
1134831 CTAATCTTGAAAGGACTGGAGACTGTTATGACAATTAATTCTTATCATATTTAAGGGATGAACTT
256 CCAATCTTGAAAAGAATGGAGACTGTTACAACAATCGATTCTTGTCATATTTAAGGGATGAATTT
* *
1134896 TGATTTTATGGGAAATAGGGCAAAGAAAAGATTTCCATGCAGAAGAAAAA-CATCAATATCATTT
321 TGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCA-AA-AAAAATCATCAATATCATTT
* * * *
1134960 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAAAAAATGAATGAAAATCCTTACTAGATT
384 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
*
1135025 CCTTGTTTGTCTCATTTGAGGCATG
449 CCATGTTTGTCTCATTTGAGGCATG
* * * * * * *
1135050 AACTTAGACTTTACAAAAATTTGTTGGAAAAAGCC-TTTCTTTCGAAACCAGATCATCAATATCA
1 AACTTAGACTTTACAAAAATTGGTGGGAAAAAGCCTTTTCTTGCAAAACCAAAGCATCAATATCG
* * *
1135114 TGTATCTTAAAGAGAAGACAATGTTTATGGTGCCTAATCC-AGAAAAGAATGGGGATTAGTATGA
66 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTA-AAAAGAATGGGGATTAGTATGA
*** * ** * *
1135178 TTTTTCATGGTTCTCTTACATAAGAGACAAACTTTGATTTTATCAAAGACGGTGGAAAGAAAAG-
130 CGATTCA-GGTTGTCTTATTTAAGAGA-AAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGC
* * * * *
1135242 ATTTTCTTGCAACAGCAAA-CATTAATGTCATGCATCCTAATAAAGGGAATGTGTTC-TAGTTCC
193 A-TTTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCTTAGTTCC
* ** * * * ** * *
1135305 CAATCTTGAAAAGAATGGAGACTATTATGACCATCGATCCTCGTCATATTTAACTGTTGAACTTT
257 CAATCTTGAAAAGAATGGAGACTGTTACAACAATCGATTCTTGTCATATTTAAGGGATGAATTTT
* *
1135370 GATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAGAAGAAAATCATCATTATCATTTAT
322 GATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCA-AAAAAAATCATCAATATCATTTAT
*
1135435 CCTAATGAGGAGAATGTGTTTATGGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
386 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
*
1135500 ATGTTTGTCTAATTTGAGGCATG
451 ATGTTTGTCTCATTTGAGGCATG
* * * * ** *
1135523 AACTTAGACTCTGCAAAAATTGGTGGGTAGAAAGCC-TTTCTTGGAAAACCAAAGTGTCAATATT
1 AACTTAGACTTTACAAAAATTGGTGGG-AAAAAGCCTTTTCTTGCAAAACCAAAGCATCAATATC
* * * *
1135587 GTGTGTCCTTATGAGAGGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATAA
65 GTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGA
* * * *
1135652 GCG-TTCGTGGTTGTCTTATTTAAGAGGAAAACCTTGATTCTATCAAAAATGGTGGAAATAAAAG
130 -CGATTC-AGGTTGTCTTATTTAAGA-GAAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAG
** *
1135716 TTTTTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTAGTCTTAGTTCC
192 CATTTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCTTAGTT-C
* * * ** * *
1135781 CCAA-CATGAAAAGATTAGAGACTGTTATGATAATCGATTCTTGAT-ATATTTAAGGGATGAACT
256 CCAATCTTGAAAAGAATGGAGACTGTTACAACAATCGATTCTTG-TCATATTTAAGGGATGAATT
* * * * ** * * * *
1135844 TTGATTTTATGGGAAATAGGTCCAAGAAAAGATTTTAATGCAAAATAAAAACTTCAATATCGTTC
320 TTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAA-AAAATCATCAATATCATTT
* * * *
1135909 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAGAAAATGAATGAAAATCCTTACTAGATT
384 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
*
1135974 CCATGTTTGTCTCATTTGAGGCAAG
449 CCATGTTTGTCTCATTTGAGGCATG
* * * * *
1135999 AACTTAGACTTTACAAAAATTGGTAGGAAAAAGCC-TTTCTTTCGAAACCAAATCATCAATATCA
1 AACTTAGACTTTACAAAAATTGGTGGGAAAAAGCCTTTTCTTGCAAAACCAAAGCATCAATATCG
* * * * *
1136063 TGTGTGCTAAAGAGAAGACTATGTTTATGGTGCCTAATCC-AGAGAAGAATGAGGATTAGTATGA
66 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTA-AAAAGAATGGGGATTAGTATGA
** * *
1136127 TTATTCATGGTTGTCTTATATAGGA-ACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGC
130 CGATTCA-GGTTGTCTTATTTAAGAGA-AAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGC
*
1136191 TTTTCTTGCGACA
193 ATTTCTTGCGACA
1136204 GCAGGCATGC
Statistics
Matches: 4183, Mismatches: 681, Indels: 175
0.83 0.14 0.03
Matches are distributed among these distances:
471 56 0.01
472 204 0.05
473 732 0.17
474 1005 0.24
475 1198 0.29
476 755 0.18
477 231 0.06
478 2 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (473 bp):
AACTTAGACTTTACAAAAATTGGTGGGAAAAAGCCTTTTCTTGCAAAACCAAAGCATCAATATCG
TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAC
GATTCAGGTTGTCTTATTTAAGAGAAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCATT
TCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCTTAGTTCCCAAT
CTTGAAAAGAATGGAGACTGTTACAACAATCGATTCTTGTCATATTTAAGGGATGAATTTTGATT
TTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTTATCCTAA
TGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTT
TGTCTCATTTGAGGCATG
Found at i:1140991 original size:158 final size:157
Alignment explanation
Indices: 1139362--1142417 Score: 564
Period size: 158 Copynumber: 19.3 Consensus size: 157
1139352 TGGTGGGAAG
* * * * * * * *
1139362 AAAGCCTTTCTTGCTAAACCAAAGCTTCAATATCGTTTATCCTTATGAGAAGACTATGTTTATGG
1 AAAG-CTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATATGTTCATAG
* * ** *
1139427 TGCCAAATCTTGAAAAGAATAGG-GATTAGTATGAGTCTTCATGGTTGTCTTATTTAAGAGGA-A
65 TGCCTAATCCT-AAAAGAAT-GGAGATTAGTACAAGACTTCATGGTTGTCTTATTTAAG-GGATA
* *
1139490 AACTTTGATTCTATAAAAAATGGTGGAAATA
127 AACTTTGATTCTATCAAAACTGGTGGAAATA
* * * * * * * * * *
1139521 AAAGTTTTTCTTGCGACACTAAGGCATCAATGTCATGCATCCTAATGA-AGGGAATGTATTCTTA
1 AAAG-CTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGA-AGAATATGTTCATA
* * * * * * ** *
1139585 GTTCCTAATCTTGAAAAGAATGGAGACTATTATCAAAAAC--AATTATTGTCATATTTAAGGGAT
64 GTGCCTAATCCT-AAAAGAATGGAGATTAGTA-C-AAGACTTCATGGTTGTCTTATTTAAGGGAT
* * * * *** * *
1139648 GAATTTTAATTTTAAGGAAAGTAAGGT--AAAGA
126 AAACTTTGATTCTATCAAAACT--GGTGGAAATA
** ** * ** * * * * * * *
1139680 AAATATTTCCACGCAAAAGAAAATCATGAATATCATTTATCATAATGAGGAGAATGTGTTAATAG
1 AAAGCTTT-CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATATGTTCATAG
* * * * * * * * * * *
1139745 TGCCTAATCAC-AAAATGAATGAAGATCATTACTAGAATCCTTGTTTGTCTTATTTGAGGCATGA
65 TGCCTAATC-CTAAAA-GAATGGAGATTAGTACAAGACTTCATGGTTGTCTTATTTAAGGGATAA
* * *
1139809 ACTTAGACTT-TA-CAAAAATTGGTGGGAA-A
128 ACTTTGA-TTCTATC-AAAACTGGTGGAAATA
* * * * * * *
1139838 AAAGCCTTGCTTGCAAAACCAAAGCGTCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGG
1 AAAG-CTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATATGTTCATAG
* * * * ** * * * * * *
1139903 TGTCTAATGCTAAAAATAATGGGGATTAGTACGATTA-TTCATGTTTGTGTTTTTTGAGAGACAA
65 TGCCTAATCCT-AAAAGAATGGAGATTAGTAC-AAGACTTCATGGTTGTCTTATTTAAGGGATAA
* *
1139967 ACTTTGATTCGATCCAAAAAC-GGTGGAAAGA
128 ACTTTGATTCTAT-C-AAAACTGGTGGAAATA
* * * * ** * * *
1139998 AAATCATATCTTGTGACACCAAAGCATCAATGCCATGTATCCTAATGA-AGGGA-ATGTTTCTTA
1 AAAGC-TTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATATG-TTCATA
* * * * ** * * * * * ** * * * *
1140061 CTTCCCAATCTTAAAAAGGGTGGAGACTATTGCAGGA-ATCGATCTTTGTCATATTTACGGGTTG
64 GTGCCTAATCCT-AAAAGAATGGAGATTAGTACAAGACTTC-ATGGTTGTCTTATTTAAGGGATA
* * * *** * * * *
1140125 AATTTTTATTTTAAGGGGAAA-TAGAGCAAAGA
127 AACTTTGATTCT-A-TCAAAACTGGTGGAAATA
* * ** * * * * * * * ** *
1140157 AAAGATTTCGATGC-AAAAAAAATCATTAATATCATTTATCCAAATAAGGAGAATGTGTTTTTTG
1 AAAGCTTTC-TTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATATGTTCATAG
* * * * ** * * * * * * *
1140221 TACCTAATCAC-AAAATGAATGAAGATCATTACTGGAATCCA-CGTGTGTCTCATTTGAGGCATG
65 TGCCTAATC-CTAAAA-GAATGGAGATTAGTACAAGACTTCATGGT-TGTCTTATTTAAGGGATA
* * * *
1140284 AACTTAGACTT-TA-CAAAAATTAGTGGGAA-A
127 AACTTTGA-TTCTATC-AAAACTGGTGGAAATA
* * * * * * *
1140314 AAAGCCTTTCTCGC-AAACCCAAAGCTTCAATATCGTGTATCCTAATGAAAAGACTATGTTTATG
1 AAAG-CTTTCTTGCGAAA-CCAAAGCATCAATATCATGTATCCTAATGAGAAGAATATGTTCATA
* * * * * * * * *
1140378 GTGCCTAATGCTAAAAAAAATGGGGATTAGTACAACGA-TCCATGTTTGTGTTATTTGAGAGACA
64 GTGCCTAATCCT-AAAAGAATGGAGATTAGTACAA-GACTTCATGGTTGTCTTATTTAAGGGATA
*
1140442 AACTTTGATTCTATCAAAAAAC-GGTGGAAAGA
127 AACTTTGATTCTATC--AAAACTGGTGGAAATA
* * * * * ** * * * *
1140474 AAACCATTTCTCGTGATACCAAAGCATTAATGCCATTTATCCTAACGA-AAGCAATGTGTTCTTA
1 AAAGC-TTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAG-AATATGTTCATA
* * * * * * ** * *
1140538 GTTCCCAATCTTGAAAAGAATGGAGATT-GT-TATGACAATTGATTTTTATCATATTTAAGGGAT
64 GTGCCTAATCCT-AAAAGAATGGAGATTAGTACAAGAC--TTCATGGTTGTCTTATTTAAGGGAT
* * * ** **
1140601 GAATTTTGATTTTAAGGAAAA-TAGGTTAAAGATA
126 AAACTTTGATTCT-ATCAAAACT-GGTGGAA-ATA
* * ** * ** * * * * * * * *
1140635 ATA-TTTTCACGCAAAAGAAAATCATAAATACCATTTATCATAACGAGGAGAATGTGCTT-ATAG
1 AAAGCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATATG-TTCATAG
* * *** * * * * * * *
1140698 TCCCTAATCAC-AAAATGAATGAAGATCCTTGCTAGAATTCATGTTTGTCTCATTTAAGGCATGA
65 TGCCTAATC-CTAAAA-GAATGGAGATTAGTACAAGACTTCATGGTTGTCTTATTTAAGGGATAA
* * * *
1140762 ACTTAGACTT-TA-CAAAAATTAGTGGGAA-A
128 ACTTTGA-TTCTATC-AAAACTGGTGGAAATA
* * * *
1140791 AAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTCATGG
1 AAAG-CTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATATGTTCATAG
* *
1140856 TGCCTAATCCTAAGAAGAATGGGGATTAGTACAAGTCTTCATGGTTGTCTTATTTAAGAGGA-AA
65 TGCCTAATCCTAA-AAGAATGGAGATTAGTACAAGACTTCATGGTTGTCTTATTTAAG-GGATAA
1140920 ACTTTGATTCTATCAAAACTGGTGGAAATA
128 ACTTTGATTCTATCAAAACTGGTGGAAATA
* * * * * * * * *
1140950 AAAGCTTTCTTGCGACACGAAGGCATCAATGTCATGCATCCTAATGA-AGGGAATGTATTCTTAG
1 AAAGCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGA-AGAATATGTTCATAG
* * * * * ** *
1141014 TTCCCAATCTTGAAAAGAATGGAGATT-GTTATCACAAAC--AATTCTTGTCATATTTAAGGGAT
65 TGCCTAATCCT-AAAAGAATGGAGATTAG-TA-CA-AGACTTCATGGTTGTCTTATTTAAGGGAT
* * * * ** * *
1141076 GAATTTTAATTTTAAGGAAAA-T-ATGGTAAAAA
126 AAACTTTGATTCT-ATCAAAACTGGTGG-AAATA
** * * ** * * * * * * *
1141108 AAATATTTCCATGCAAAAAAAAATCATGAATATCATTTATCATAATGAGGAGAATGTGTTTATAG
1 AAAGCTTT-CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATATGTTCATAG
* * *** * * * * * * *
1141173 TCCCTAATCAC-AAAATGAATGAAGATCCTTGCTAGAATTCATGTTTGTCTCATTTAAGGCATGA
65 TGCCTAATC-CTAAAA-GAATGGAGATTAGTACAAGACTTCATGGTTGTCTTATTTAAGGGATAA
* * * *
1141237 ACTTAGACTT-TA-CAAAAATTAGTGGGAA-A
128 ACTTTGA-TTCTATC-AAAACTGGTGGAAATA
* * * *
1141266 AAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTCATGG
1 AAAG-CTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATATGTTCATAG
* *
1141331 TGCCTAATCCTAAGAAGAATGGGGATTAGTACAAGTCTTCATGGTTGTCTTATTTAAGAGGA-AA
65 TGCCTAATCCTAA-AAGAATGGAGATTAGTACAAGACTTCATGGTTGTCTTATTTAAG-GGATAA
1141395 ACTTTGATTCTATCAAAACTGGTGGAAATA
128 ACTTTGATTCTATCAAAACTGGTGGAAATA
* * * * * * * * *
1141425 AAAGCTTTCTTGCGACACGAAGGCATCAATGTCATGCATCCTAATGA-AGGGAATGTATTCTTAG
1 AAAGCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGA-AGAATATGTTCATAG
* * * * * ** *
1141489 TTCCCAATCTTGAAAAGAATGGAGATT-GTTATCACAAAC--AATTCTTGTCATATTTAAGGGAT
65 TGCCTAATCCT-AAAAGAATGGAGATTAG-TA-CA-AGACTTCATGGTTGTCTTATTTAAGGGAT
* * * * ** * *
1141551 GAATTTTAATTTTAAGGAAAA-TAGG-GTAAAAA
126 AAACTTTGATTCT-ATCAAAACT-GGTGGAAATA
** * * ** * * * * * *
1141583 AAATATTTCCATGCAAAAGAAAATCATGAATATCATTTATCATAATGAGGAA-AATGTGTTTATA
1 AAAGCTTT-CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA-GAAGAATATGTTCATA
* * * * * * * *
1141647 GTCCCTAATCAC-AAAATGAATGAAGATCATTACTAGA-TTCCATGTTTGTCTCATTTAAGGCAT
64 GTGCCTAATC-CTAAAA-GAATGGAGATTAGTACAAGACTT-CATGGTTGTCTTATTTAAGGGAT
* * * * *
1141710 GAACTTAGACTT-TA-CAAAAATTGGCGG-GA-A
126 AAACTTTGA-TTCTATC-AAAACTGGTGGAAATA
** * * * * *
1141740 AAAGCCTTTCTTTTGAAACCAAATCATCAATATCATGTATCCTAAAGAGAAGACTATGTTTATGG
1 AAAG-CTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATATGTTCATAG
* * ** * *
1141805 TGCCTAAT-CTAGAAAAGAATGGGGATTAGTATGATTA-TTCATGGTTGTCTT-TTATAAGAGAC
65 TGCCTAATCCT--AAAAGAATGGAGATTAGTA-CAAGACTTCATGGTTGTCTTATT-TAAGGGAT
** *
1141867 AAGTTTTGATTCTATCAAAAAC-GGTGGAAAGA
126 AAACTTTGATTCTATC-AAAACTGGTGGAAATA
* * * * * *
1141899 AAAGCTTTCTTGCGACAA-CAAA-TATCAATGTCATGCATCCTAATGA-AGGGAATGTGTTCTTA
1 AAAGCTTTCTTGCGA-AACCAAAGCATCAATATCATGTATCCTAATGAGA-AGAATATGTTCATA
* * * * * **
1141961 GTTCAC-CATCTTGAAAAGAATGGAGACT-GTTAC--GACAATCAATCCTTGTCATT-TTTAAGG
64 GTGC-CTAATCCT-AAAAGAATGGAGATTAG-TACAAGAC-TTC-ATGGTTGTC-TTATTTAAGG
* * ** * *
1142021 GATAAATTTTGATTTTAAGGAAAA-TAGG-GCAAAGA
123 GATAAACTTTGATTCT-ATCAAAACT-GGTGGAAATA
* * * ** * * * * * * *
1142056 AAAGATTTTTATGCAAAATAAAATCATCATTATCATTTATCCTAAGGAGGAGAATGTGTTTATAG
1 AAAGCTTTCT-TGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATATGTTCATAG
* * * * * * * * * * * **
1142121 TGCGTAATTAC-AAAATGAATGAAGATCATTACTAGA-ATCGATGTTTGTCTAATTTGAGGCACG
65 TGCCTAA-TCCTAAAA-GAATGGAGATTAGTACAAGACTTC-ATGGTTGTCTTATTTAAGGGATA
* * *
1142184 AA-TTTAGACTT-T-GCAAAATTGGTGG--GTA
127 AACTTT-GA-TTCTATCAAAACTGGTGGAAATA
** * * * * * *
1142212 GAAAGCCTTTCTTG-GAAAACCAAAGTGTCAATACCGTGTATCCTTATGAGATGACTATGTTTAT
1 -AAAG-CTTTCTTGCG-AAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATATGTTCAT
* * * ** *
1142276 GGTGCCTAATCCTAAAAAGAATGGGGATTAGTA-TACTCTTCATGGTTGTCTTATTTTAGAGGCA
63 AGTGCCTAATCCT-AAAAGAATGGAGATTAGTACAAGACTTCATGGTTGTCTTA-TTTA-AGGGA
* *
1142340 -AAA-TTTGATTCTATCAAAAAC-AGTGGAAAGA
125 TAAACTTTGATTCTATC-AAAACTGGTGGAAATA
* * * *
1142371 AAAGCTTTTCTTGCGACA-GAAAGCATCAATGTCATGCATCCTAATGA
1 AAAGC-TTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA
1142418 AGGGAATGTG
Statistics
Matches: 2019, Mismatches: 699, Indels: 360
0.66 0.23 0.12
Matches are distributed among these distances:
154 1 0.00
155 3 0.00
156 32 0.02
157 333 0.16
158 761 0.38
159 702 0.35
160 170 0.08
161 17 0.01
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (157 bp):
AAAGCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATATGTTCATAGT
GCCTAATCCTAAAAGAATGGAGATTAGTACAAGACTTCATGGTTGTCTTATTTAAGGGATAAACT
TTGATTCTATCAAAACTGGTGGAAATA
Found at i:1141402 original size:475 final size:473
Alignment explanation
Indices: 1137901--1143858 Score: 6431
Period size: 475 Copynumber: 12.5 Consensus size: 473
1137891 TTGCTACAGC
* * * * * *
1137901 AGGCATGAACTTAGACTTTGCAAAAATTGGCGGGTAGAAAGCCTTTCTTGGAAAACCAAAGTGTC
1 AGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTT-GCAAACCAAAGCGTC
* * * ** * *
1137966 AATAGCATGTATTCTTGTGAGATGACCT-TGTTTACGGTGCCTAATCCTAAAAAGAATGGGGATT
65 AATATCGTGTATCCTAATGAGAAGA-CTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATT
* * * *
1138030 AGTATGAGTCTTCATGGCTGTCTTATTTAAGAGGCAAACTTTGATTTTATCAAAAACGGTGGAAA
129 AGTATGAGTATTCATGGTTGTCTTATTTAAGA-GAAAACTTTGATTCTATCAAAAACGGTGGAAA
* ** * * *
1138095 GAAAAGCTTTTC-T-TG-CAATAAA-CATCAATGTCAGGCATCCTAACGAAGGGAATGTGTTCTT
193 GAAAAGCATTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTT
* * * * * * * * * * * * *
1138156 GGTTCTCAAACTTAAAAAGAATGCAGGCTGTTACGATAATCGATCCTTGTCATATGTAAGGAATT
258 AGTTCCCAATCTTGAAAAGAATGGAGACTGTTAC-ACAAACAATTCTTGTCATATTTAAGGGATG
* * *
1138221 AATTTTGATTTTAAGGAAAATAGGGCAATGAAAAGATTTTCATGCAAAAGGAAATCATCAATATC
322 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * * * *
1138286 TTTTATCCTAAGGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTT
387 ATTTATCATAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
1138351 GAATCCATGTTTGTCT-ATTTTTG
452 GAATCCATGTTTGTCTCA--TTTG
* * * *
1138374 AGGCATGAACTTAGACTTTGCAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAATCAAAGTGTC
1 AGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGC-AAACCAAAGCGTC
* * * * * *
1138439 AATATCGTGTATCCTTATCAGAAAACTATGTTTATGGTGGCTAATCCTAAAAAGAATGGGGCTTG
65 AATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTA
* * * * * * * *
1138504 GCATGACTATTCATGTTTGTCTTATTTAAGAGCCAAACTTTCATTCTACCATAAACAGTGGAAAG
130 GTATGAGTATTCATGGTTGTCTTATTTAAGAG-AAAACTTTGATTCTATCAAAAACGGTGGAAAG
* * * * * * * * *
1138569 AGAAGCTTTTCTTATGTCCCCAAAGCATCAATGTCTTGTATCTTAATGAAAGGAATATGCTT-TT
194 AAAAGCATTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG-TTCTT
* * * * * * * * * *
1138633 GGTTTCCAATCTTGAAATGACTGGAGACTATTACA-AGTATCAATGCTTGCCTTATTTCAA-TGA
258 AGTTCCCAATCTTGAAAAGAATGGAGACTGTTACACA--AACAATTCTTGTCATATTT-AAGGGA
* * * ** **
1138696 TGAAATTTGATTTTATGGAATATAGGGGCAAAGAAAAGATTTCCAACCAAAAGAAAATCATCCGT
320 TGAATTTTGATTTTAAGGAAAATA-GGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAAT
* * * ** * * * *
1138761 ATCATTTATCATATTTAGGACAATGTGTTTATAGCACCTAATTACAAAATAAATGAAGTTCCTTA
384 ATCATTTATCATAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
*
1138826 CTAGAA-CACATGTTTGTCTTATTTG
449 CTAGAATC-CATGTTTGTCTCATTTG
** * * *
1138851 AGGCATGAACAAAGACTTTTA-AAAAATTGGTTGGAAAAAAGCCTTTATTGCAAAGCCAAAGCAT
1 AGGCATGAACTTAGAC-TTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAA-CCAAAGCGT
* * * * * *
1138915 CAATATCATGTATCCTAATGAGAAGACTACGTTTATGGTGCCTAATGCTAAAAATATTGGGCATT
64 CAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATT
* *
1138980 AGTATGACG-ATTCA-GGTTTGTGTTATTTGAA-AGAAAACTTTGATTCTGTCAAAAAACGGTGG
129 AGTATGA-GTATTCATGG-TTGTCTTATTT-AAGAGAAAACTTTGATTCTATC-AAAAACGGTGG
* * *
1139042 AAAGAAAACCATTTCTTGTGACACCAAAGCATCAATGCCATGTATCCAAATGAAGGGAATGT-TT
190 AAAGAAAAGCATTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTT
* * ** * * ** * * *
1139106 TTTGGTTCCCAATCTTGAAAAGGGTGGAGACTATTGCA-AGAATCGGTGCTTGTGATATTGAAGG
255 CTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTACACA-AA-CAATTCTTGTCATATTTAAGG
* * * * * *
1139170 GTTGAATTTTTATTTTAAGGAAAATAGAGCAATGAAAAGATTTCCAAGCAAAA-AAAATCTTCAA
318 GATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAA
* *
1139234 TATCATTTATCCTAATGAGGAGAATGTGTTTATTGTGCCTAATCACAAAATGAATGAAGATCATT
383 TATCATTTATCATAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATT
*
1139299 ACT-GAAATCCATGTTCGTCTCATTTG
448 ACTAG-AATCCATGTTTGTCTCATTTG
* * * *
1139325 AGGCACGAACTTAGACTTTGCAAAAATTGGTGGGAAGAAAGCCTTTCTTGCTAAACCAAAGCTTC
1 AGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGC-AAACCAAAGCGTC
* * * * * *
1139390 AATATCGTTTATCCTTATGAGAAGACTATGTTTATGGTGCCAAATCTTGAAAAGAATAGGGATTA
65 AATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTA
* * * *
1139455 GTATGAGTCTTCATGGTTGTCTTATTTAAGAGGAAAACTTTGATTCTATAAAAAATGGTGGAAAT
130 GTATGAGTATTCATGGTTGTCTTATTTAAGA-GAAAACTTTGATTCTATCAAAAACGGTGGAAAG
** * * * * *
1139520 AAAAGTTTTTCTTGCGACACTAAGGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCTTA
194 AAAAGCATTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTA
* * * *
1139585 GTTCCTAATCTTGAAAAGAATGGAGACTATTATCAAAAACAATTATTGTCATATTTAAGGGATGA
259 GTTCCCAATCTTGAAAAGAATGGAGACTGTTA-CACAAACAATTCTTGTCATATTTAAGGGATGA
* * * * * * *
1139650 ATTTTAATTTTAAGGAAAGTAAGGTAAAGAAAATATTTCCACGCAAAAGAAAATCATGAATATCA
323 ATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCA
*
1139715 TTTATCATAATGAGGAGAATGTGTTAATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAG
388 TTTATCATAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAG
* *
1139780 AATCCTTGTTTGTCTTATTTG
453 AATCCATGTTTGTCTCATTTG
*
1139801 AGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTGCTTGCAAAACCAAAGCGTC
1 AGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGC-AAACCAAAGCGTC
* * *
1139866 AATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGTCTAATGCTAAAAATAATGGGGATTA
65 AATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTA
* * * * * * *
1139931 GTACGATTATTCATGTTTGTGTTTTTTGAGAGACAAACTTTGATTCGATCCAAAAACGGTGGAAA
130 GTATGAGTATTCATGGTTGTCTTATTTAAGAGA-AAACTTTGATTCTAT-CAAAAACGGTGGAAA
* * *
1139996 GAAAATCATATCTTGTGACACCAAAGCATCAATGCCATGTATCCTAATGAAGGGAATGT-TTCTT
193 GAAAAGCATTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTT
* * ** * * * * * * *
1140060 ACTTCCCAATCTTAAAAAGGGTGGAGACTATTGCAGGAATCGA-TCTTTGTCATATTTACGGGTT
258 AGTTCCCAATCTTGAAAAGAATGGAGACTGTTACA-CAAACAATTC-TTGTCATATTTAAGGGAT
* * * * *
1140124 GAATTTTTATTTTAAGGGGAAATAGAGCAAAGAAAAGATTTCGATGCAAAA-AAAATCATTAATA
321 GAATTTTGATTTTAA-GGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATA
* * * *
1140188 TCATTTATCCA-AATAAGGAGAATGTGTTTTTTGTACCTAATCACAAAATGAATGAAGATCATTA
385 TCATTTAT-CATAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
* * *
1140252 CTGGAATCCACGTGTGTCTCATTTG
449 CTAGAATCCATGTTTGTCTCATTTG
* * *
1140277 AGGCATGAACTTAGACTTTACAAAAATTAGTGGGAAAAAAGCCTTTCTCGCAAACCCAAAGCTTC
1 AGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAA-CCAAAGCGTC
* * *
1140342 AATATCGTGTATCCTAATGAAAAGACTATGTTTATGGTGCCTAATGCTAAAAAAAATGGGGATTA
65 AATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTA
** * * * *
1140407 GTACAACG-ATCCATGTTTGTGTTATTTGAGAGACAAACTTTGATTCTATCAAAAAACGGTGGAA
130 GTATGA-GTATTCATGGTTGTCTTATTTAAGAGA-AAACTTTGATTCTATC-AAAAACGGTGGAA
* * * * * * * * *
1140471 AGAAAACCATTTCTCGTGATACCAAAGCATTAATGCCATTTATCCTAACGAAAGCAATGTGTTCT
192 AGAAAAGCATTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCT
* * *** * *
1140536 TAGTTCCCAATCTTGAAAAGAATGGAGATTGTTATGACAATTGATTTTTATCATATTTAAGGGAT
257 TAGTTCCCAATCTTGAAAAGAATGGAGACTGTTA-CACAAACAATTCTTGTCATATTTAAGGGAT
** * * * * * *
1140601 GAATTTTGATTTTAAGGAAAATAGGTTAAAGATAATATTTTCACGCAAAAGAAAATCATAAATAC
321 GAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATAT
* * * * *
1140666 CATTTATCATAACGAGGAGAATGTGCTTATAGTCCCTAATCACAAAATGAATGAAGATCCTTGCT
386 CATTTATCATAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACT
* *
1140731 AGAATTCATGTTTGTCTCATTTA
451 AGAATCCATGTTTGTCTCATTTG
* * *
1140754 AGGCATGAACTTAGACTTTACAAAAATTAGTGGGAAAAAAGCCTTTCTTGTGAAACCAAAGCATC
1 AGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTG-CAAACCAAAGCGTC
* *
1140819 AATATCGTGTATCCTAATGAGAAGACTATGTTCATGGTGCCTAATCCTAAGAAGAATGGGGATTA
65 AATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTA
** *
1140884 GTACAAGTCTTCATGGTTGTCTTATTTAAGAGGAAAACTTTGATTCTATC-AAAACTGGTGGAAA
130 GTATGAGTATTCATGGTTGTCTTATTTAAGA-GAAAACTTTGATTCTATCAAAAAC-GGTGGAAA
* * * * * *
1140948 TAAAAGC-TTTCTTGCGACACGAAGGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCTT
193 GAAAAGCATTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTT
*
1141012 AGTTCCCAATCTTGAAAAGAATGGAGATTGTTATCACAAACAATTCTTGTCATATTTAAGGGATG
258 AGTTCCCAATCTTGAAAAGAATGGAGACTGTTA-CACAAACAATTCTTGTCATATTTAAGGGATG
* * * * * * *
1141077 AATTTTAATTTTAAGGAAAATATGGTAAAAAAAATATTTCCATGCAAAAAAAAATCATGAATATC
322 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * *
1141142 ATTTATCATAATGAGGAGAATGTGTTTATAGTCCCTAATCACAAAATGAATGAAGATCCTTGCTA
387 ATTTATCATAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
* *
1141207 GAATTCATGTTTGTCTCATTTA
452 GAATCCATGTTTGTCTCATTTG
* * *
1141229 AGGCATGAACTTAGACTTTACAAAAATTAGTGGGAAAAAAGCCTTTCTTGTGAAACCAAAGCATC
1 AGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTG-CAAACCAAAGCGTC
* *
1141294 AATATCGTGTATCCTAATGAGAAGACTATGTTCATGGTGCCTAATCCTAAGAAGAATGGGGATTA
65 AATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTA
** *
1141359 GTACAAGTCTTCATGGTTGTCTTATTTAAGAGGAAAACTTTGATTCTATC-AAAACTGGTGGAAA
130 GTATGAGTATTCATGGTTGTCTTATTTAAGA-GAAAACTTTGATTCTATCAAAAAC-GGTGGAAA
* * * * * *
1141423 TAAAAGC-TTTCTTGCGACACGAAGGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCTT
193 GAAAAGCATTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTT
*
1141487 AGTTCCCAATCTTGAAAAGAATGGAGATTGTTATCACAAACAATTCTTGTCATATTTAAGGGATG
258 AGTTCCCAATCTTGAAAAGAATGGAGACTGTTA-CACAAACAATTCTTGTCATATTTAAGGGATG
* * * * *
1141552 AATTTTAATTTTAAGGAAAATAGGGTAAAAAAAATATTTCCATGCAAAAGAAAATCATGAATATC
322 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* *
1141617 ATTTATCATAATGAGGAAAATGTGTTTATAGTCCCTAATCACAAAATGAATGAAGATCATTACTA
387 ATTTATCATAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
* *
1141682 GATTCCATGTTTGTCTCATTTA
452 GAATCCATGTTTGTCTCATTTG
* * *
1141704 AGGCATGAACTTAGACTTTACAAAAATTGGCGGG-AAAAAGCCTTTCTTTTG-AAACCAAATCAT
1 AGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTC--TTGCAAACCAAAGCGT
* *
1141767 CAATATCATGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTAAT-CTAGAAAAGAATGGGGAT
64 CAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTA-AAAAGAATGGGGAT
* **
1141831 TAGTATGATTATTCATGGTTGTCTT-TTATAAGAGACAAGTTTTGATTCTATCAAAAACGGTGGA
128 TAGTATGAGTATTCATGGTTGTCTTATT-TAAGAGA-AAACTTTGATTCTATCAAAAACGGTGGA
* * * *
1141895 AAGAAAAGC-TTTCTTGCGACAACAAA-TATCAATGTCATGCATCCTAATGAAGGGAATGTGTTC
191 AAGAAAAGCATTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTC
* * *
1141958 TTAGTTCACC-ATCTTGAAAAGAATGGAGACTGTTACGACAATCAATCCTTGTCATTTTTAAGGG
256 TTAGTTC-CCAATCTTGAAAAGAATGGAGACTGTTAC-ACAAACAATTCTTGTCATATTTAAGGG
* ** * *
1142022 ATAAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTTATGCAAAATAAAATCATCATT
319 ATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAAT
* * * *
1142087 ATCATTTATCCTAAGGAGGAGAATGTGTTTATAGTGCGTAATTACAAAATGAATGAAGATCATTA
384 ATCATTTATCATAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
* *
1142152 CTAGAATCGATGTTTGTCTAATTTG
449 CTAGAATCCATGTTTGTCTCATTTG
* * * * * * *
1142177 AGGCACGAATTTAGACTTTGC-AAAATTGGTGGGTAGAAAGCCTTTCTTGGAAAACCAAAGTGTC
1 AGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTT-GCAAACCAAAGCGTC
* * *
1142241 AATACCGTGTATCCTTATGAGATGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTA
65 AATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTA
* * * *
1142306 GTAT-ACTCTTCATGGTTGTCTTATTTTAGAGGCAAAA-TTTGATTCTATCAAAAACAGTGGAAA
130 GTATGAGTATTCATGGTTGTCTTATTTAAGA-G-AAAACTTTGATTCTATCAAAAACGGTGGAAA
* * * * *
1142369 GAAAAGCTTTTCTTGCGACA-GAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTGTTTTT
193 GAAAAGCATTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTT
* * * * * * * * * *
1142433 GGATCCCAATCTTAAAAAGAATGGAGACTGTTACAACGATCGATCCTTGTCAAATTGAAGGAATG
258 AGTTCCCAATCTTGAAAAGAATGGAGACTGTTAC-ACAAACAATTCTTGTCATATTTAAGGGATG
* * * * * * *
1142498 AATTTTGATTTCAAAGAAAATAGGGCAATGAAAAGATTTTCATGCAAAAAAAAATCATCATTATA
322 AATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * * * * *
1142563 ATTTATCCTAATGTGGAGAATGCGTTTATAGTGTCTAAACAC-AAATGGAAGGAAGATCATTACT
387 ATTTATCATAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAT-GAATGAAGATCATTACT
1142627 CA-AATCCATGTTTGTCTCATTTG
451 -AGAATCCATGTTTGTCTCATTTG
* * * ** * * *
1142650 AGGCACGAACTTAGACTATGCAAAAATTAATGGCAAAAAAGCCTTTCTTGCCAAACAAAAGTGTC
1 AGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTG-CAAACCAAAGCGTC
* * ** *
1142715 AATATCGTGTATCCTTATGAGAAGACTACGTTTATGGTGCCTAATCCTAAAATTAATGGGGATTG
65 AATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTA
* * * * * ** * *
1142780 GTGTGACTATTCATGTTTGTCTTATTTAATAGAAAAATATTGATTCCCTCAACAATGGTGGAAA-
130 GTATGAGTATTCATGGTTGTCTTATTTAAGAGAAAACT-TTGATTCTATCAAAAACGGTGGAAAG
* * * * * * *
1142844 AGAAGCATTTCTTATGGC-CCTAAAGGATCAATGTCATGTATCCTAATAAAAGGAATGTGTTTTT
194 AAAAGCATTTCTTGTGACACC-AAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTT
* * * * * **
1142908 GGTTCCCAATCTTGAAAAGAATGGAGTCTGTTAAAAGAAAAAGAAGCATT-TCTTATATTTAAGG
258 AGTTCCCAATCTTGAAAAGAATGGAGACTGTT-ACACAAACA-ATTC-TTGTC--ATATTTAAGG
* * * * *
1142972 AATTAATTTTGATTTTAAGGAAAATAGGGCAATGAAAAAATTTCCATGCAAAAGAAAATCATCAT
318 GATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAA
* * * * * * *
1143037 TATCATTTATCCTAATGAAGAGATTGTGTTTATACTACCTAATCACAAAAGGAATGAAGATCCTT
383 TATCATTTATCATAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATT
* * *
1143102 GCTAGAATTCATTTTTGTCTCATTTG
448 ACTAGAATCCATGTTTGTCTCATTTG
*** * * **
1143128 ATTTACGAACTTAGACTTTACAAAAATTTGTGGGAAAAAAGCCTTTCTTGCCAAACCAAAATGTC
1 AGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTG-CAAACCAAAGCGTC
* * * * * * * *
1143193 AATATCGTGTATCTTTATCAAAAGATTAGGTTTATGGTGCCCAATCCTAAAAAGAATGGGGATTG
65 AATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTA
* * * * *
1143258 GAATGACTGTTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAACTGTGGAAAG
130 GTATGAGTATTCATGGTTGTCTTATTTAAGAGA-AAACTTTGATTCTATCAAAAACGGTGGAAAG
* * * * * * * * * *
1143323 AAAAGCTTTTCATATGACCCCAAAGCATTAATGTAATGTATCTTAATGAAAGGAATGTGTTTTTG
194 AAAAGCATTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTA
* * * * * * *
1143388 GTTCCCAATCTTGAAATGAATGGAGACTATTACA-AGAACCAGTGCTTGCCTTATTTCAA-AGAT
259 GTTCCCAATCTTGAAAAGAATGGAGACTGTTACACA-AA-CAATTCTTGTCATATTT-AAGGGAT
* * * ** *
1143451 GAATTTTGATTTCATGGAAAATAGGGCAAAGAAAAGATTTGCAACCAAAAGAAAATCATCAGTAT
321 GAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATAT
* * * * * * *
1143516 CATTTATCATATTTAGAAGAATGTGTTTATAGTGCTTAATCACAAAATAAATGAAGATCCTTACA
386 CATTTATCATAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACT
* *
1143581 AGAACCCATGTTTGTCTCATAT-
451 AGAATCCATGTTTGTCTCATTTG
* * * * * *
1143603 ATGGCATGAACTTAGACTTT-CAAAAATGGGTGGGAAAAAAGCCTTTATTGCAAAGCTATATCAT
1 A-GGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAA-CCAAAGCGT
* * * * *
1143667 CAATATCATGTATCCTAATAAGAAGACTATGTTTATTGTGCCTAA-CGCTAAAAATATTGGGGAT
64 CAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC-CTAAAAAGAATGGGGAT
* * *
1143731 TAGTACGACG-ATTCA-GGTT-TCTATTATTTGAGAGAAAACTTTGACTCTATCAAAAAACGGTG
128 TAGTATGA-GTATTCATGGTTGTC--TTATTTAAGAGAAAACTTTGATTCTATC-AAAAACGGTG
* * * *
1143793 AAAAGAAAACCATTTCTTGTGACACCAAAGCATCAATATCATTTATCCTAATG-AGGAGAATGTG
189 GAAAGAAAAGCATTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGG-GAATGTG
1143857 TT
253 TT
1143859 TATTGTGCCT
Statistics
Matches: 4702, Mismatches: 680, Indels: 204
0.84 0.12 0.04
Matches are distributed among these distances:
471 2 0.00
472 78 0.02
473 771 0.16
474 558 0.12
475 1182 0.25
476 913 0.19
477 684 0.15
478 422 0.09
479 90 0.02
480 2 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (473 bp):
AGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAACCAAAGCGTCA
ATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAG
TATGAGTATTCATGGTTGTCTTATTTAAGAGAAAACTTTGATTCTATCAAAAACGGTGGAAAGAA
AAGCATTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTAGT
TCCCAATCTTGAAAAGAATGGAGACTGTTACACAAACAATTCTTGTCATATTTAAGGGATGAATT
TTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTT
ATCATAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
CCATGTTTGTCTCATTTG
Found at i:1145168 original size:476 final size:472
Alignment explanation
Indices: 1143823--1147198 Score: 3176
Period size: 476 Copynumber: 7.2 Consensus size: 472
1143813 GACACCAAAG
*
1143823 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATTGTGCCTAATCACAAAATGAATGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
* * * * *
1143888 ATTATTACTGGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGATTTTGCAAAAATTTGTGG
66 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* * ** * * * * *
1143953 GAAGAAGGCCTTTCTTGTGAAACCAAAGCTTCAATATCGTTTATCCCT-ATGACAAGACTATATT
131 GAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTAT-CCTAATGAGAAGACTATGTT
* * * * * * *
1144017 TATGGTGCCAAATCTTGAAAAGAATAGGGATTAGTATGA-GTATTCATG---TCTTATTTAAGAG
195 TATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGATG-ATCCATGTTTTGTTATTTGAGA-
* * * * * * * *
1144078 GA-AAACTTTAATTCTATCAAAAATGGTGGAAATAAAAGTTTTTCTTGTGACACAAAAGCGTCAA
258 GACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAA-TCTTTCCTGCGACACCAAAGCATCAA
* * * *
1144142 TGCCTTGCATCCTAAT-AAAGGAAATGTATTTTTAGTTCCCAATCTTGAAAAGAATAGAGACTGT
322 TGCCATGCATCCTAATGAAA-G-AATGTGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGT
* * * * * *
1144206 TATGAAAAACAATTCTTGTCATA-TT-----T--A-----ATTTTAAGAAAAATAGGGGAAAGAA
385 TATGACAATCGATCCTTGTCATATTTAAGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAA
*
1144258 AATATTTCCATGCAAAAGAAAAT
450 AAGATTTCCATGCAAAAGAAAAT
* * * * * *
1144281 CATGAATATCATTTATCATAATGAGGAGAATATGCTTATAGTGCCTAATCATAAAATGAATGAAA
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
*
1144346 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGG
66 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* * * * * *
1144411 GATAAAAGCCTTACTTGCAAAGCCAAAGCATCAATATCGTGTATCGTAATGAGAAAACTATGTTT
131 GAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTT
* * * *
1144476 ATGGTGCCTAATGCTAAAAATAATGGGGATTAGTACGACGATTCC-TGTTTGTGTTATTTGAGAG
196 ATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGATGA-TCCATGTTT-TGTTATTTGAGAG
* * * * *
1144540 ATC-AACTTTTATTCGATCCAAAAACGGTGAAAAGAAAATCATTTCTTGTGACACCAAAGCATCA
259 A-CAAACTTTGATTCTAT-CAAAAACGGTGGAAAGAAAATC-TTTCCTGCGACACCAAAGCATCA
* * * * * **
1144604 ATGCCATGTATCCTAATGAAGGGAT-TGTTTCTT-GCTTCTCAATCTTAAAAAAGGGTGGAGACT
321 ATGCCATGCATCCTAATGAAAGAATGTG-TTCTTAG-TTCCCAATCTT-GAAAAGAATGGAGACT
* *** * * * * *
1144667 ATTGCAAGAATCGATCCTTGTCATATTTACAGGTTGAATTTTTATTTTAAGGGAAATAGAGCAAA
383 GTTATGACAATCGATCCTTGTCATATTTA-AGGATGAATTTTGATTTTAAGGAAAATAGGGCAAA
1144732 GAAAAGATTTCCATGCAAAA-AAAAT
447 GAAAAGATTTCCATGCAAAAGAAAAT
* ** * * *
1144757 CATCAATATCATTTATCCAAACAAGGAGAATGTGTTTTTTGTGCCTAATCACAAAATGAACGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
* * * * *
1144822 AACATTACTGGAATCCATTTTTATCTCATTTGAGGCACGAACTTGGACTTTACAAAAATTGGTGG
66 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* * *
1144887 GAAAAAAGCCTTTCTCGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTC
131 GAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTT
** * * *
1144952 ATGGTGCCTAATGTTAAAAAAAATGGGGATTAGTTTAATGATCCATGTTTTAGTTATTTGAGAGA
196 ATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGATGATCCATGTTTT-GTTATTTGAGAGA
* * * *
1145017 CAAACTTTGATTCTATCAAAAAACGATGGAAAGGAAATCATTTCCTGTGATACCAAAGCATCAAT
260 CAAACTTTGATTCTATC-AAAAACGGTGGAAAGAAAATC-TTTCCTGCGACACCAAAGCATCAAT
** * *
1145082 GCCATTTATCCTAATGAAAGCAATGTGTTCTTAGTTCCCAATCCTGAAAAGAATGGAGATTGTTA
323 GCCATGCATCCTAATGAAAG-AATGTGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTA
* * * *
1145147 TGACAATCGATTCTTGTCATATTTAAGGGATGAATTTTGATTTTCAGGAAAATAAGGCAAAGATA
387 TGACAATCGATCCTTGTCATATTTAA-GGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAA
** * *
1145212 ATCTTTTCACGCAAAAGAAAAT
451 AGATTTCCATGCAAAAGAAAAT
* * * * * *
1145234 CGTAAATATCATTTGTCATAACGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATAAATGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
* * * * *
1145299 ATCCTTGCTAGAATTCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTACAAAAATTGGTGG
66 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* * *
1145364 GAAAAAAGCTTTTCTTACGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTT
131 GAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTT
* * * * * * *
1145429 ATGGTGCCTAATCTTGATAAGAATGGGGATTAGCATGA-G-TCTTCATGGTTGTCTTATTTAAGA
196 ATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGATGATC--CAT-GTTTTGTTATTTGAGA
* * * *
1145492 GGA-AAACTTTGATTCTATC-AAACCTGGTGGAAATAAAAATTTTTCTTGCGACACCAAAGCATC
258 -GACAAACTTTGATTCTATCAAAAAC-GGTGGAAA-GAAAATCTTTCCTGCGACACCAAAGCATC
** * * * * * *
1145555 AATGTTATGCATCCTAATG-AAGAATGTATTCCTAGTTCCTAATCTTGAAAATAGTGGACACTGT
320 AATGCCATGCATCCTAATGAAAGAATGTGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGT
* ** * * *
1145619 TATGACAATTGATTTTTGTCATATTTAAGGGATGAATTTTGATTTTACAAG-CAATAGGGAAAAG
385 TATGACAATCGATCCTTGTCATATTTAA-GGATGAATTTTGATTTTA-AGGAAAATAGGGCAAAG
* ** *
1145683 AAAAGATTTCGATGCGGAAGAAAAA
448 AAAAGATTTCCATGCAAAAGAAAAT
** * *
1145708 CATCAATATCGCTTATCCTAATGAGGAGAATGTGTTTATTGTGCCTAATCACAAAATGAATGAAA
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
* * * * *
1145773 ATCCTTACTAGATTCCATGTTTGTCTCACTTGAGGCATGAACTTAGACTTTACGAAAATTGGTGG
66 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* * *** * *
1145838 G-GAAAAGCCATTCTTTTGAAACCAAATCATCAATA-CATGTA-CCTAAAGAGAAGACTATGTTT
131 GAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTT
* * * * * *
1145900 ATAGTGCCTAAT-CTAGAAAAGAATGGGGATTAGTATGATTATTCGTG-GTTGTCTTTTATGAGA
196 ATGGTGCCTAATCCTA-AAAAGAATGGGGATTAGTATGATGATCCATGTTTTGT-TATT-TGAGA
* * * * * *
1145963 GACAAGCTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTCTCGCGACAGCAAA-TATCAA
258 GACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAATCTTTCCT-GCGACACCAAAGCATCAA
* * *** *
1146027 TGTCATGCATCCTAATGAAGAGAATGTGTTCTCAGTTCATTATCTTGTAAAGAATGGAGACTGTT
322 TGCCATGCATCCTAATGAA-AGAATGTGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTT
* * * *
1146092 ACGACAATCGATCCATGTCATATTTAAAGGATGAATTTTGATTTTAAAGAAAATAGGGCAAGGAA
386 ATGACAATCGATCCTTGTCATATTT-AAGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAA
*
1146157 AAGATTTCCATGCAAAA-TAAAT
450 AAGATTTCCATGCAAAAGAAAAT
* *
1146179 CATCATTATCATTTATCCTTATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
* * * * *
1146244 ATCAGTACTAGAATCCTTGTTTGTCTAATTTGAGGCACGAACTTAGACTTTGCAAAAATTGGCGG
66 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* * * ** * *
1146309 GTAGAATGCCTTTCTTGCAAAACCAAAGTGTCAATA-C-TG--------TGAGATGACTATATTT
131 GAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTT
* * * * * * * *
1146364 ATGGTGCCTAACCCTAAAATGAATGGGGATTAGTAT-ACT-CTTCATGGTTGTCTTATTTTAAAG
196 ATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGA-TGATCCAT-GTTTTGTTATTTGAGAG
* * * ***
1146427 GCAAATTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTCCTTGCGATGGCAAA-CATCAAT
259 ACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAATCTTTCC-TGCGACACCAAAGCATCAAT
* * * * * *
1146491 GTCATGCATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTAAAAAGAATGGGGACTATTA
323 GCCATGCATCCTAATGAA-AGAATGTGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTA
* * **
1146556 TGACAATCAATCCTTGTCATATTTAAGGAATGAATTTTGATTTTAAGGAAAATAGGGGAATCAAA
387 TGACAATCGATCCTTGTCATATTTAAGG-ATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAA
* *
1146621 AGATTTTCATGGAAAAGAAAAT
451 AGATTTCCATGCAAAAGAAAAT
** * * * * * *
1146643 CATCGTTATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGTCAAAACACAAAATAAAGGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
* * * * * **
1146708 ATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAATTTAAACGTCACAAAAATTGGCAG
66 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* * ** * * * * *
1146773 TAAGAAAGCCTTTCTTGCAAAATGAAAGCATCAATATCATGCATCCTTATCAGAAGATTGTGTTT
131 GAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTT
* *
1146838 ATGGTGCCTAATCCTAAAAAGAATGGGGATT-GGA--ATGA--C------TG----TT-CGAGAC
196 ATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGATGATCCATGTTTTGTTATTTGAGAGAC
** * * ** ** * *
1146887 AAACTTTGATTCTATCAAAAATAGTGGAAAGAGAAGCTTTTTTTATGACCCCAAAGCATCAATGT
261 AAACTTTGATTCTATCAAAAACGGTGGAAAGAAAATC-TTTCCTGCGACACCAAAGCATCAATGC
* * * * * *
1146952 CATGTATCTTAATGAAAGGAA--TG-T-TT-GTTTCCAATCTT-AAAATGAAAGAAGACTGTTAC
325 CATGCATCCTAATGAAA-GAATGTGTTCTTAGTTCCCAATCTTGAAAA-GAATGGAGACTGTTAT
* * * * * * * *
1147011 AAGAATC-AGTGCTTGCCTTATTTCATA-GATGAATTTTTATTTTATGGAAAATTGGGCAAAGAA
388 GACAATCGA-TCCTTGTCATATTT-A-AGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAA
**
1147074 AAGATTTCCAACCAAAAGAAAAT
450 AAGATTTCCATGCAAAAGAAAAT
* * *
1147097 CATCAGTATCATTTATCATAATTAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
* * *
1147162 ATCCTTACTAGAACCCATGTTTGTCTCATTTGTGGCA
66 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCA
1147199 TAAACTTTGA
Statistics
Matches: 2409, Mismatches: 426, Indels: 170
0.80 0.14 0.06
Matches are distributed among these distances:
453 5 0.00
454 175 0.07
455 4 0.00
456 2 0.00
457 4 0.00
458 243 0.10
459 34 0.01
461 4 0.00
462 43 0.02
463 269 0.11
464 198 0.08
465 6 0.00
466 2 0.00
469 2 0.00
470 38 0.02
471 214 0.09
472 137 0.06
473 33 0.01
474 259 0.11
475 18 0.01
476 420 0.17
477 290 0.12
478 9 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (472 bp):
CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
GAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTT
ATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGATGATCCATGTTTTGTTATTTGAGAGAC
AAACTTTGATTCTATCAAAAACGGTGGAAAGAAAATCTTTCCTGCGACACCAAAGCATCAATGCC
ATGCATCCTAATGAAAGAATGTGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAC
AATCGATCCTTGTCATATTTAAGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
TCCATGCAAAAGAAAAT
Found at i:1147364 original size:159 final size:159
Alignment explanation
Indices: 1147038--1147364 Score: 433
Period size: 159 Copynumber: 2.1 Consensus size: 159
1147028 TTATTTCATA
* * * *
1147038 GATGAATTTTTATTTTATGGAAAATTGGGCAAAGAAAAGATTTCCAACCAAAAGAAAATCATCAG
1 GATGAACTTTGATTTTATGGAAAATTGGGCAAAGAAAAGATTTCCAACCAAAAGAAAAACATCAA
* * * *
1147103 TATCATTTATCATAATTAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCCTT
66 CATCATTTATCATAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAAATCCTT
*
1147168 ACTAGAACCCATGTTTGTCTCATTTGTGG
131 ACTAGAACCCATGTTTGTCTCATTTGAGG
* * * ** *
1147197 CATAAACTTTGATTTTATGGGAAATAT-GGCAAAGAAAAGATTTCCATGCTAAAGAAAAACATCA
1 GATGAACTTTGATTTTATGGAAAAT-TGGGCAAAGAAAAGATTTCCAACCAAAAGAAAAACATCA
* * * *
1147261 ACATCGTTTATCCTAATGAGGAGAATGTGTTTATCA-TGCTTAATCACAAAATGAATAAAAATCT
65 ACATCATTTATCATAATGAGGAGAATGTGTTTAT-AGTGCCTAATCACAAAATGAATAAAAATCC
**
1147325 TTACTAGATTCCATGTTTGTCTCATTTGAGG
129 TTACTAGAACCCATGTTTGTCTCATTTGAGG
1147356 GATGAACTT
1 GATGAACTT
1147365 AGACTTTACA
Statistics
Matches: 143, Mismatches: 23, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
159 141 0.99
160 2 0.01
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33
Consensus pattern (159 bp):
GATGAACTTTGATTTTATGGAAAATTGGGCAAAGAAAAGATTTCCAACCAAAAGAAAAACATCAA
CATCATTTATCATAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAAATCCTT
ACTAGAACCCATGTTTGTCTCATTTGAGG
Found at i:1148261 original size:475 final size:471
Alignment explanation
Indices: 1147231--1148554 Score: 1636
Period size: 475 Copynumber: 2.8 Consensus size: 471
1147221 TATGGCAAAG
* * * * * * * *
1147231 AAAAGATTTCCATGCTAAAGAAAAACATCAACATCGTTTATCCTAATGAGGAGAATGTGTTTATC
1 AAAAGATTACCACGCAAAAGAAAATCATAAATAACATTTATCCTAATGAGGAGAATGTGTTTAT-
* * * * *
1147296 ATGCTTAATCACAAAATGAATAAAAATCTTTACTAGATTCCATGTTTGTCTCATTTGAGGGATGA
65 ATGCCTAATCACAAAATGAATGAAGATCTTT-CTAGAATCCATGTTTGTCTCATTTGAGGAATGA
* * * *
1147361 ACTTAGACTTTACAAAAATTGGTGGGAAG-CAGCCTTTCTTTTGAAACCAAATCATCCATATCAT
129 ACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTCTGAAACCAAAGCATCAATATCAT
* * *** * *
1147425 GCATCCTAAAGAGAAGACTACAATTATGGTGCCTAATCCAGAAAGGAATGAGGATTAGTATGATT
194 GTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAA-GAATG-GGATTAGTATGAGT
* ** * * * * * * *
1147490 ATTCATGGTTGTCTTATACAAGAGACAAACTTTGATTTTATCAAAAACGGGGGAAAGAAAAGCTT
257 CTTCATGGTTGTCTTATTTAAGGGAAAAACTTTGATTCTATCAAAAATGGTGGAAATAAAAGTTT
* * * * * *
1147555 TTCTTGCAACAACAAA-CTTCAATGCCATGCATCCTAATGAAGGGAAAGTGTTCTTGGTTCCCAA
322 TTCTTGCGACACCAAAGCTTCAATGTCATGCATCCTAATGAAGGGAATGTATTCCTGGTTCCCAA
* *
1147619 TCTTGAAAAGAATGGAGACTGTTACGACAATCAATCCATGTCATATTTAATGGATGAATTTTGAT
387 TCTTGAAAAGAATGGAGACTGTTACGACAAACAATCCATGTCATATTTAAGGGATGAATTTTGAT
1147684 TTTAAAGAAAAAAGGGAAAA
452 TTTAAAGAAAAAAGGGAAAA
** * * * * * * *
1147704 AAAAGATTTTCGCGCAAAATAAAATCATCATTACCATTTATCCTAATAACGAGAATGTGTTTATT
1 AAAAGATTACCACGCAAAAGAAAATCATAAATAACATTTATCCTAATGAGGAGAATGTGTTTA-T
* * * * * * *
1147769 ATGGCTGATCACAAAATGAATGAAGATCATTTCTGGAATCCATGTTTGTCTTATTCGAGGCACGA
65 ATGCCTAATCACAAAATGAATGAAGATC-TTTCTAGAATCCATGTTTGTCTCATTTGAGGAATGA
** * *
1147834 ACTTAGACTTTGTAAAAATTGGTGGGAAGAAAGCCTTTCTTCTGAAACCAAAGCATTAATATCTT
129 ACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTCTGAAACCAAAGCATCAATATCAT
*
1147899 GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGATAAGAATAGGGATTAGTATGAGT
194 GTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGA-AAGAAT-GGGATTAGTATGAGT
**
1147964 CTTCATGGTTGTCTTATTTTTGGGAAAAACTTTGATTCTATCAAAAATGGTGGAAATAAAAGTTT
257 CTTCATGGTTGTCTTATTTAAGGGAAAAACTTTGATTCTATCAAAAATGGTGGAAATAAAAGTTT
*
1148029 TTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCCTGGTTCCCAA
322 TTCTTGCGACACCAAAGCTTCAATGTCATGCATCCTAATGAAGGGAATGTATTCCTGGTTCCCAA
* ** * * * * *
1148094 TCTTGAAAAGAATGGAGATTGTTTTGACAAACGATTCTTGTGATATTTAAGGGATGGATTTTGAT
387 TCTTGAAAAGAATGGAGACTGTTACGACAAACAATCCATGTCATATTTAAGGGATGAATTTTGAT
* ** *
1148159 TTTAAGGAAAATTGGGCAAAG
452 TTTAAAGAAAAAAGGG-AAAA
* * * *
1148180 ATAATATTACCACGCAAGAGAAAA-CATAAATAACATTTATCATAATGAGGAGAATGTGTTTATA
1 AAAAGATTACCACGCAAAAGAAAATCATAAATAACATTTATCCTAATGAGGAGAATGTGTTTATA
* * *
1148244 GTGCCTAATCACAAAATGAATGAAGATCCTTGCTAGAATACATGTTTATCTCATTTGAGGAATGA
66 -TGCCTAATCACAAAATGAATGAAGAT-CTTTCTAGAATCCATGTTTGTCTCATTTGAGGAATGA
1148309 ACTTAGACTTTACAAAAATTGGTGGGAA-AAAGGCC-TTCGTTGC-GAAACCAAAGCATCAATAT
129 ACTTAGACTTTACAAAAATTGGTGGGAAGAAA-GCCTTTC-TT-CTGAAACCAAAGCATCAATAT
* *
1148371 CGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAGAAGAATGGGGATTAGTATA
191 CATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGA-AAGAAT-GGGATTAGTATG
* * *
1148436 AGTCTTCATGGTTGTTTTATTTAAGAGG-AAAACTTTGATTCTATCAAAATTGGTGGAAATAAAG
254 AGTCTTCATGGTTGTCTTATTTAAG-GGAAAAACTTTGATTCTATCAAAAATGGTGGAAATAAAA
1148500 GTTTTTCTTGCGACACCAAAGCTTCAATGTCATGCATCCTAATGAAGGGAATGTA
318 GTTTTTCTTGCGACACCAAAGCTTCAATGTCATGCATCCTAATGAAGGGAATGTA
1148555 ATCGATCATT
Statistics
Matches: 729, Mismatches: 109, Indels: 24
0.85 0.13 0.03
Matches are distributed among these distances:
473 128 0.18
474 160 0.22
475 417 0.57
476 24 0.03
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.31
Consensus pattern (471 bp):
AAAAGATTACCACGCAAAAGAAAATCATAAATAACATTTATCCTAATGAGGAGAATGTGTTTATA
TGCCTAATCACAAAATGAATGAAGATCTTTCTAGAATCCATGTTTGTCTCATTTGAGGAATGAAC
TTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTCTGAAACCAAAGCATCAATATCATGT
ATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAGAATGGGATTAGTATGAGTCTTC
ATGGTTGTCTTATTTAAGGGAAAAACTTTGATTCTATCAAAAATGGTGGAAATAAAAGTTTTTCT
TGCGACACCAAAGCTTCAATGTCATGCATCCTAATGAAGGGAATGTATTCCTGGTTCCCAATCTT
GAAAAGAATGGAGACTGTTACGACAAACAATCCATGTCATATTTAAGGGATGAATTTTGATTTTA
AAGAAAAAAGGGAAAA
Found at i:1150510 original size:476 final size:476
Alignment explanation
Indices: 1149535--1157792 Score: 9024
Period size: 475 Copynumber: 17.4 Consensus size: 476
1149525 GGATGAACTA
* * * * *
1149535 AAAAAAGCCTTTCCTGCAAAACCAAAGCGTCAATA-CGGTGTAT-CTTAATAAGAATACTATGTT
1 AAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATC-GTGTATCCTT-ATGAGAAGACTATGTT
* * * * * * * * *
1149598 TATGGTGCCAAATGCTAAAAATATTGGGGATTAGTATGACG-ATTCTTGTATGTGTTATTTGAGA
64 TATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGA-GTATTCATGTTTGTCTTATTTAAGA
* ** * * *
1149662 -GACAAACTTTAATTCTATCAGAAAACAGTGGAAAGAAAACCATTTCTTGTGACACCAAAGCATC
128 GGACAAACTTTGATTCTATCA-AAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
* * * * *
1149726 AATGCCATGTATCCTAATGAATGGAATGT-TTCTTCGTTCCCAATCTTGAAAA-AGGTGGAGTCT
192 AATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGA-ATGGAGACT
* * * * * * * * * *
1149789 ATTGCAAGAATCGATGCTTGTCACATTTAAGGGTTGAATTTTTATTTTACGAAAAATAGAGCAAA
256 GTTACGACAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAG-GGAAA
*
1149854 GAAAAGATTTCC-TGGCAAAA-AAAATCATCAACATC-TCTTATCCTAATGAGGAGAATGTGTTT
320 GAAAAGATTTCCAT-GCAAAAGAAAATCATCAATATCAT-TTATCCTAATGAGGAGAATGTGTTT
* * * * * *
1149916 ATTGTGCCTGATCACAAAATGAATAAAGATCATTTCTGGAATCCATGTTTGTCTCATTTGAGACA
383 ATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCA
** * *
1149981 CAAACTTAGACTTTGCAAAAATTAGTGGG
448 TGAACTTAGACTTTACAAAAATTGGTGGG
* *
1150010 AAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTGTCCTTATGAGAAGACTATGTTTA
1 AAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTA
* * * * * *
1150075 TGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATAAGTCTTCATGGTTGTCCTATTTATGAGGA
66 TGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGGA
* * *
1150140 -AAACTTTGATTCTATCGAAAATGGTGGAAATAAAAGTTTTTCTTGCGACACCAAAGCATCAATG
131 CAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATG
* * **
1150204 TCAT-TCATCCTAATGACGGGAATGTATTCCAGGTTCCCAATCTTGAAAAGAATGGAGACTGTTA
196 TCATGT-ATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTA
** * * * * *
1150268 TTACAAACGATTCTTGTCATATTTAAGGGATGAATTTTAATTTTAAGGAAACTAGGGTAAGTAAA
260 CGACAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGAAAG-AAA
* * * * *
1150333 ACATTTCCATGCAAAAGAAAGTCGTCAATATCATTTATCATAATGAGGAGAATGTGTTTATAATG
324 AGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTG
* * * * * * *
1150398 CCTAATCTCAAAATGAAGGACGATCATTACTAGAATCCAAGTTTGTCTCATTTAACGCAAGAACT
389 CCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACT
1150463 TAGACTTTACAAAAATTGGTGGG
454 TAGACTTTACAAAAATTGGTGGG
* * * * *
1150486 AAAAAGGCTTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAAAGAGAAGACTATGTTTA
1 AAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTA
* * * * * * * ** *
1150551 TGGTGCCTAATGCTAAAAATAATGGGGATTAGTACGA-TGAGTCTTTTTTGAGTTATTTGAGA-G
66 TGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGT-ATTCATGTTTGTCTTATTTAAGAGG
* ** * * * *
1150614 ACAAACTTTAATTCTATCAAAAAACAGTGGAAGGAAAACCATTTCTTGTGACACCAAAGCATCAA
130 ACAAACTTTGATTCTATC-AAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAA
* * * *
1150679 TGCCATGTATCCTAATGAAGGGAATGTGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGATTTTT
194 TGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTT
* * * * * * *
1150744 ATGACAATTGATTCTTATCATATTTAAGTGATGAATTTTGATTTTAGGGAAAATAGGGCAAAGAT
259 ACGACAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGG-AAAGAA
* * * * * *
1150809 AATATTTCCACGCAAAAGAAAA-CATAAATAACATTTATCATAATGAGGAAAATGTGTTTATAGT
323 AAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGT
* * * * *
1150873 GCCTAATCACAAAAAGAATGAAGATCCTTGCTAGAATTCATGTTTGTCTCCTTTGAGGCATGAAC
388 GCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAAC
*
1150938 TTAAACTTTACAAAAATTGGTGGG
453 TTAGACTTTACAAAAATTGGTGGG
* * *
1150962 AAAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTGA
1 AAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTA
* * * *
1151027 TGGTGCCTAATCCTGAGAAGAATGGGGATTAGTATGAGTCTTTATGGTTGTCTTATTTAAGAGGA
66 TGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGGA
* * * *
1151092 -ACACTTTGA---T-TC-----TGGTGGAAATAAAAGTTTTTCTTGCGACACCAAAGCTTCAATG
131 CAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATG
* * * * * * *
1151147 TCACGCATCCTAATGAAGGGAATGTATTCTTGCTTCCCAATCTTGAAAAGAATGGAGACTATCAT
196 TCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTAC
* * * * **
1151212 GACAATCGATTCTTGTGATATTTAAGGGATAAACTTTGATTTTTTTTGGGAAAA-AGGGTAAAGA
261 GACAATCGATGCTTGTCATATTTAAGGGATGAATTTTGA---TTTTAAGGAAAATAGGG-AAAGA
* * *
1151276 AAAGATTTTCATGCACAAA-AAAAACATCAATATCGTTTATCCTAATGAGGAGAATGTGTTTATA
322 AAAGATTTCCATGCA-AAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* * * *
1151340 GTGCCTAATCACAAAATGAATGAAAATCTTTACTAGATTCCATGTGTGTCTCATTTGAGGCATGA
386 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGA
*
1151405 ACTTAGACTTCACAAAAATTGGTGGG
451 ACTTAGACTTTACAAAAATTGGTGGG
* * * * * * ***
1151431 -AAAAAGCCTTTCTTTCGAAACGAAATCATCCATATCATGTATCCTAAACTGAAGACTATG-TTA
1 AAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTA
*** ** * * * *
1151494 TGGTGCCTAATCAAAAAAAGAATAAGGATTAGTATGATTATTCATGGTTATCTTATATAAGA-GA
66 TGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGGA
* * * * *
1151558 CAAACTTTGATTTTATCAAAAATGGTGGAAAGGAAAGCTTTTCTTGCGATAGCAAA-CTTCAATG
131 CAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATG
* * * * * *
1151622 CCATGCATCCTAATGAAGGGAAAGTGCTCCTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTAT
196 TCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTAC
* * *
1151687 GACAATCGATCCTTATCATATTTAAGGGATGAATTTTGATTTTAAAGAAAATAGGGCAAA-AAAA
261 GACAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGG-AAAGAAAA
* * * * * * **
1151751 GATTTTCACGCAAAAGAAAATTATCATTATCATTTATCCTAATGAGGAGAATGTGATTAGAAAGC
325 GATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* *
1151816 CTAATCACAAAATGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTTGAGGCACGAACTT
390 CTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTT
* *
1151881 AGACTTTGCCAAAATTGGTGGG
455 AGACTTTACAAAAATTGGTGGG
** * *** * *
1151903 AGGAAGGCCTTTCTTG-GAAAACCAAATTGTCAATATCGTGCATCCTTATGAGATGACTATGTTT
1 AAAAAAGCCTTTCTTGCG-AAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTT
* * * * * * * *
1151967 ATGGTGCCTAATCCTAAAAAGAGTAGGAACTAGTATGAGTCTTCATGATTGTCTTCTTTAAGAGG
65 ATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGG
* ** * ** *
1152032 -CAAACTTTGATTCTATTAAAAAACAGTGGAAAGAGAAGCTTTTCTTATGACCCCAAAGCATCAA
130 ACAAACTTTGATTCTA-TCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAA
* * * * * *
1152096 TGTCATGTATCTTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAATGAATAGAGACTATT
194 TGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTT
* * * * * ** *
1152161 ACAAGAATC-AGTGCTTGCCTTATTTCATAGATGAATTTTGATTTTATGGAAAATAGGGCAAAGA
259 ACGACAATCGA-TGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGG-AAAGA
** * * * * *
1152225 AAAGATTTCCAACCAAAAGAAAATCATCAGTATCATTTATCATAATTAGAAGAATGCGTTTATAG
322 AAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAG
* * *
1152290 TGCCTAATCACAAAATAAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAG
387 TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAA
1152355 CTTAGACTTTACAAAAATTGGTGGG
452 CTTAGACTTTACAAAAATTGGTGGG
* * * * *
1152380 AAAAAAGCCTTTCTTGCAAAACCAAAACATCAATATCATGTATCCTGATGAGAAGAATATGTTTA
1 AAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTA
* * * *
1152445 TGGTGCCTAATGCC-GAAAATAATAGGTATTAGTATGA-TGATTCATGTTTGTATTATTTAAGA-
66 TGGTGCCTAAT-CCTGAAAAGAATGGGGATTAGTATGAGT-ATTCATGTTTGTCTTATTTAAGAG
* * * * *
1152507 GACAAACTTTGATTCAATCAAAAAACGGTGGAAAGAAAACCATTTCTTGTGACACCAAAGCATCA
129 GACAAACTTTGATTCTATC-AAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCA
* * * *
1152572 ATGCCATGTATCCTAATGAAAGGAATGT-TTCTTGGTTCCCAATCTTGAAAAGAGTGGAGACTAT
193 ATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGT
* * * * * * * * *
1152636 TGCAAGAATCGAAGCTTGTCATATTTGAGGGTTGAATTTTTATTTTAAGGAAAATAAAGCAAAGA
258 TACGACAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAAT-AGGGAAAGA
* * *
1152701 AAAGATTTCCATGCAAAA-AAAATCATC---ATCTTTTATCCTAATGAGGAGAATGCGTTTATTG
322 AAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAG
* * * *
1152762 TGCCTAATCACAAAATGAATGGAGATCATTTCTGGAATCAATGTTTGTCTCATTTGAGGCATGAA
387 TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAA
* *
1152827 CTTAGACTTTGCAAAAATTGGTAGG
452 CTTAGACTTTACAAAAATTGGTGGG
* * *
1152852 AAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATAAGAAGACTATGTTTA
1 AAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTA
* * * * *
1152917 TGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATCAGTCTTCATGGTTGTCTTTTTTATGAGGA
66 TGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGGA
* *
1152982 -AAACTTTGATTCTATCAAAAATGGTGGAAATAAAAGTTTTTCTTGCGACACCAAAGCATCAATG
131 CAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATG
* * * **
1153046 TCATGCATCCTAAAGAAGGGAATGTATTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTGT
196 TCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTAC
* * **
1153111 GACAAAT-GATTCTTGTCATATTTAAGGGATGAATTTTAATTTTGTGGAAAATAGGGTAAAGAAA
261 GAC-AATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGG-AAAGAAA
* * *
1153175 ATATTTCCATGCAAAAGAAAATCGTCAATATCATTTATCATAATGAGGAGAATGTGTTTATAGTG
324 AGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTG
* *
1153240 CCTAATCAGAAAATGAATGAAGATCATTACTAGAATCCATTTTTGTCTCATTTGAGGCATGAACT
389 CCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACT
1153305 TAGACTTTACAAAAATTGGTGGG
454 TAGACTTTACAAAAATTGGTGGG
* * * * *
1153328 AAAAAAGCCTTTCTTGCAAAACCAAAGTATCAATGTCGTGTATCCTAATGAAAAGACTA--TTTA
1 AAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTA
* * * ** * *
1153391 TGGTGCCTAATGCTAAAAATAATGGGGATTAGTATGACAATTCATGTTTGTATTATTTGAGA-GA
66 TGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGGA
* ** * * *
1153455 TAAACTTTGATTCTATCAAAAAACAGTGGAAAGAAAACCATTTCTTGTGACACCAAAGCATCAAT
131 CAAACTTTGATTCTATC-AAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAAT
* * * * *
1153520 GCCATGTACCCTAATGAAGGGAATGTGTTCTTAGTTCCTAATCTTGAAAAGAATGGAGATTGTTA
195 GTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTA
* * * * * *
1153585 TGACAATCTATTCTTATCATATTTAAGGGATGACTTTTGATTTTAAGGAAAATAGGGCAAAGATA
260 CGACAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGG-AAAGAAA
* * ** * * * *
1153650 ATATTTTCGCGCAAAAGAAAATCATAAATATCATTTATCAC-AACGAGGAGAAT-TTTTTGTAGT
324 AGATTTCCATGCAAAAGAAAATCATCAATATCATTTATC-CTAATGAGGAGAATGTGTTTATAGT
* * * * *
1153713 GCTTAATCACAAAATGAATGAAGATCCTTGCTAGAATTCATGTTTGTCTCGTTTGAGGCATGAAC
388 GCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAAC
1153778 TTAGACTTTACAAAAATTGGTGGG
453 TTAGACTTTACAAAAATTGGTGGG
* * **
1153802 AAAAAAGCCTTTCTTGTGGAACCAAAGCATCAATATCGTGTATCC-TATTGAGAAGACTAAATTT
1 AAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTA-TGAGAAGACTATGTTT
* * **
1153866 ATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTCTTCTTGGATGTCTTATTTAAGAGG
65 ATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGG
* * * *
1153931 A-AAAATGTGATTCTATCAAAAATGGTGAAAATAAAAG-TGTTTCTTGCGACACCAAAGCATCAA
130 ACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCT-TTTCTTGCGACACCAAAGCATCAA
* * *
1153994 TGTCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCAATCCTGAAAAGAATGGAGACTGTT
194 TGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTT
* * * * * *
1154059 ACGACAATCAATTCTTGTCATATTTAAGGGATGAACTTTGATTTTATGGGAAATAAGGCAAAGAA
259 ACGACAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAAT-AGGGAAAGAA
* * *
1154124 AAGATTTCCAT-CGAAAAGAAAAACATCAATATCATTTATCCTGATGAGGAGAATGTGTTTATAA
323 AAGATTTCCATGC-AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAG
* * * * * * * **
1154188 TGCCTAATCGCAAAATGAGTGAAAATCCTTACAAGATTCCATGTTTGTTTCATTTGAGGCACAAA
387 TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAA
* * *
1154253 CTTAGACCTTGCAAAAATTGGT-GT
452 CTTAGACTTTACAAAAATTGGTGGG
* ** *
1154277 AAAGAAAGCCTTTCTTGCAAAACCAAAGTGTCAATATCGTGTATCCTTATGAGATGACTATGTTT
1 AAA-AAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTT
* ** * *
1154342 ATGGTGCCT-ATCCCTAAAAAGAATAAGGATTAGTATGAGTATTAAT-TATTGTCTTATGTAAGA
65 ATGGTGCCTAAT-CCTGAAAAGAATGGGGATTAGTATGAGTATTCATGT-TTGTCTTATTTAAGA
* * * *
1154405 -GACAAACTTTGATTCTATCAAAAATTGTGGAAAGAAAAGTTTTTCTTGCGATAGCAAA-CATCA
128 GGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCA
* * * * * *
1154468 ATGTCATGCATCTTAATGAAGGGAATATGTTTTTGGTTCCCAATCTTGAAAGGAATGGAGGCTGT
193 ATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGT
* * *
1154533 TACGACAATTGATCCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGACAAAGA
258 TACGACAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGG-GAAAGA
* * *
1154598 AAAGATTTCCATGCAAAAGAAAAGCATCATTATCATTTATCTTAATGAGGAGATAATGAGGAGAA
322 AAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAG--AAT-----G--
* * * * *
1154663 TATGTTTATAGTGCCTAATCACAAAATAAATGAAGATCAGTAGTGGAATCTATGTTTGTCTCATT
378 --TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATT
* * * * *
1154728 TGAGACACGAACTTAGACTTTGCAGAAATTGGTGTG
441 TGAGGCATGAACTTAGACTTTACAAAAATTGGTGGG
* * ** * * *
1154764 AAGAAAGCCTTTCTTGCAAAACCAAAGTGTTAATATCATGTATCCTTATGAGATGACTATGTTTA
1 AAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTA
* * * * * * *
1154829 CGGTGCCTAACCCTAAAAAGAATGGGGATTAGTATGAGTCTTGATGGTTGTCTTATTTAAG-GGG
66 TGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGGA
* * * *
1154893 CAAACTTTTATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAAGAGCAAA-CATCAATG
131 CAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATG
* * *
1154957 TCATGCATCCTAATGAAGGGAATGTGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTATTAC
196 TCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTAC
* * * * * *
1155022 GACAGTCGTTCCTTGTCATATTTAAGGAATGAATTTTGATTTTAAGGAAAATTGGGCAATGAAAA
261 GACAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGG-AAAGAAAA
* * *
1155087 GATTTCCATGCAAAAGAAAATCATCATTAACATTTATCCTAATAAGGAGAATGTGTTTATAGTGC
325 GATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* *
1155152 CTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACTT
390 CTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTT
1155217 AGACTTTACAAAAATTGGTGGG
455 AGACTTTACAAAAATTGGTGGG
* * * ** * * * *
1155239 AAGAAAGCCTTTCTTACAAAACCAAAGTGTTAATATTGTGTGTCCTTATGAGAATACTATGTTTA
1 AAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTA
** * * * *
1155304 TGGCACCTAATCCT-AAGAAGAATGGGGATTGGTATG-GCTGTTCACGTTTGTCTTATTTAAG-T
66 TGGTGCCTAATCCTGAA-AAGAATGGGGATTAGTATGAG-TATTCATGTTTGTCTTATTTAAGAG
* * * * * *
1155366 GACAAACTTTGATTCT-TAAAAAAATGGAGGAAAGAAAACCTTTTCTTACAACACCAAACCATCA
129 GACAAACTTTGATTCTAT-CAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCA
* * * * * *
1155430 ATGTCTTGTATCCTAATGAAAGGAATGTATTTTTGGTTCCCATTCTTGAAAA-AATGGAGTCTGT
193 ATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGT
* * * * * * * * *
1155494 CACAAGAATCAATGCTTGCCTTATTTCAA-GGATAAATTTTGATTTTATGAAAAATAGGGCAAAG
258 TACGACAATCGATGCTTGTCATATTT-AAGGGATGAATTTTGATTTTAAGGAAAATAGGG-AAAG
* * ** *
1155558 AAAAGATTTCAAAGCAAAAGAAAATCATCAATATCATTTATCAAAATTAGGAGAATGTGTTTATA
321 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* *
1155623 GTGCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCAAGA
386 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGA
*
1155688 ACTTAGACTGTACAAAAATTGGTGGG
451 ACTTAGACTTTACAAAAATTGGTGGG
* *
1155714 AAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATAC-TATTGAGAAGACTATGTT
1 -AAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTA-TGAGAAGACTATGTT
** * *** * * * ** * * * *
1155778 TATGGTGGAAATAAACCTTG--ATTTATTGTGA-CACCA-AAGCATT--T-CTTG-GTTATTTTA
64 TATGGT-G-CCTAATCC-TGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTA-TTTA
* * * * *
1155835 AGA-GATAAACCTTGATTCTATCAAAAAATGGTGGAAAGAAAACCATTTCTTGTGACACCAAAGC
125 AGAGGACAAACTTTGATTCTATC-AAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC
* * ** *
1155899 ATCAATGCCATGTATCCTAAAGAAGGGAATGT-TTCTTGGTTCCCAATCTTGAAAAGTGTGGTGA
189 ATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGA
* * * *
1155963 CTATTGCGAGAATCGATGCTTGTCATATTTAAGGGATGAACTTTT-ATTTTAAGGAAAATAGAGC
254 CTGTTACGACAATCGATGCTTGTCATATTTAAGGGATGAA-TTTTGATTTTAAGGAAAATAG-GG
* * **
1156027 AAAGAAAAGATTTCCATGCAAAA-AAAA-CATTAATATCATTGATTTTAATGAGGAGAATGTGTT
317 AAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTT
* * * * *
1156090 TATTGTGCCTAATCACAAAA-AAATTGAAGATCATTAGTAGAATCCATGTTTGTCACGTTTGAGG
382 TATAGTGCCTAATCACAAAATGAA-TGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGG
* ** *
1156154 CACGAACTTAGACTTTGTAAAAATTGGTGTG
446 CATGAACTTAGACTTTACAAAAATTGGTGGG
** * *
1156185 AGGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCTTTATGAGAAGACTATGTTTA
1 AAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTA
* * * * *
1156250 TGGTTCCTAATCCTGAAAAGAATAGGGG-TTAGTATGAGTATTCATGGTTGTCGTATATAAG-TG
66 TGGTGCCTAATCCTGAAAAGAAT-GGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGG
* * * ** * *
1156313 ACAAACTTCGATTCTATCAAAAATTGTAGAAAGAAAAGCTTTTCTTATGACTCTAAAGCATCAAT
130 ACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAAT
* * * * * *
1156378 GTCACGTATCCCAAT-AGAGGGATTGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGGGAGTGTT
195 GTCATGTATCCTAATGA-AGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTT
** * * * * ** *
1156442 ACGGGAATCAATGCTTGCCTTATTTAAGGGATAAACCTTGATTTTAAGGAAAATAGGGCCAAGAA
259 ACGACAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGG-AAAGAA
* * * * * * *
1156507 AAGATTTTCATGCAAAAGCAAATCATCAATATCATGTATCCTAGTAAGGAGAATGTGTCTATACT
323 AAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGT
* * * * * *
1156572 GCCTAATCAC-AATTGAATGAAGGTCATTACTAGAATCCTTATTTGTCTCATTTAAGGCACGAAC
388 GCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAAC
*
1156636 CTAGACTTTACAAAAATTGGTGGG
453 TTAGACTTTACAAAAATTGGTGGG
* * * * **
1156660 AAGAAAGCCTTTCTTGTGATACCAAAGCATCAATATCGTGTATCCTTATAAGAAGACTATGTTCG
1 AAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTA
* *
1156725 TGGTGCCTAATCCTAAAAAGAATGGGGATTGGTATGAGTATTCATGTTTGTCTTATTTAAGA-GA
66 TGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGGA
* *
1156789 CAAACTTTAATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATG
131 CAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATG
* * * * * * *
1156854 TCGTGTATCCTAATAAAGGGAAAGT-TCCTTGGTTCCCAATCTTGAAAAGAGTGGAGATTGTTGC
196 TCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTAC
* *
1156918 -ACGAATCAATGCTTGTCATATTTAAGGGATGAATTTT-ATTTTATGGAAAATAGGGCAAAGAAA
261 GAC-AATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGG-AAAGAAA
* * * *
1156981 ATATTTCCATGCAAAACAAAAATCATCAATATCATTTATCCTAATTAGGAGAATATG-TT-T-GT
324 AGATTTCCATGCAAAA-GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGT
* * * *
1157043 ---T-ATGC-CTAAA-G-A-G--GA-GATT-C-----T--ATGTTTGTCTCATTTGAGACATTAA
388 GCCTAAT-CACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAA
*
1157089 CTTAGACTTTATAAAAATTGGTGGG
452 CTTAGACTTTACAAAAATTGGTGGG
* * * * * *
1157114 AAAAAAGCCTTTGTTTCGAAACCAAATCATCAATATCATGTATCCTAAAGAGAAGACTATGTTTA
1 AAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTA
* * * * *
1157179 TGGTGCCTAATCCTAAAAAGAATTGGGACTACTATGATTATTCATGTTTGTCTTATTTAAGA-GA
66 TGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGGA
* * * * *
1157243 CAAACTTTGATTCTATCAAAAACGGTAGAAACAAAAG-TTTTCCTTGCGACACCAAGGCATAAAT
131 CAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTT-CTTGCGACACCAAAGCATCAAT
** * ** * * * *
1157307 GTCATCCATCCAAATGAACAGAATGCGTTCTTAGTTCCCAATCTTGAAAAGAATGCAGACTATTA
195 GTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTA
*
1157372 CGACAATCGATACTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAA
260 CGACAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGG-AAAGAAA
* * * *
1157437 ATATCTCCATGCAAAAGAAAATCATCAATATCATTTATCATAATGAGGAGAATGTGTTTATAGTA
324 AGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTG
* * *
1157502 CCTAAACACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTGGAGGCATGAACT
389 CCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACT
1157567 TAGACTTTACAAAAATTGGTGGG
454 TAGACTTTACAAAAATTGGTGGG
* ** ** * *
1157590 AAAAAA-CCTTTCTTCCTTAACCAAAGTGTCAATATCATGTATCCTAATGAGAAGACTATGTTTA
1 AAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTA
* * * ** * *
1157654 TGGTGCCTAATCCTAAAAAGAATGAGGATTAATATGACAATTCATGTTTGTTTTATTTAAGA-AA
66 TGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGGA
* * ** *
1157718 CAAACTTTGATTCTATCAAAAATGGTGCAAAGAAAACCTTTTCTTATGACACCCAAGCATCAATG
131 CAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATG
*
1157783 GCATGTATCC
196 TCATGTATCC
1157793 AGATAGTGGA
Statistics
Matches: 6539, Mismatches: 1074, Indels: 340
0.82 0.14 0.04
Matches are distributed among these distances:
453 4 0.00
454 225 0.03
455 100 0.02
456 45 0.01
457 1 0.00
458 2 0.00
461 3 0.00
462 8 0.00
463 2 0.00
464 1 0.00
465 2 0.00
466 126 0.02
467 69 0.01
468 86 0.01
469 134 0.02
470 67 0.01
471 194 0.03
472 527 0.08
473 303 0.05
474 581 0.09
475 1760 0.27
476 1372 0.21
477 498 0.08
478 11 0.00
479 2 0.00
482 1 0.00
484 3 0.00
486 409 0.06
487 3 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (476 bp):
AAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTA
TGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGGA
CAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATG
TCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTAC
GACAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGAAAGAAAAG
ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTA
GACTTTACAAAAATTGGTGGG
Found at i:1154101 original size:159 final size:157
Alignment explanation
Indices: 1152861--1154101 Score: 507
Period size: 159 Copynumber: 7.8 Consensus size: 157
1152851 GAAGAAAGCC
* * * *
1152861 TTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTAT-AAGAAGACTATGT-TTATGGTGCC
1 TTTCTTGCGAAACCAAAGCATCAATGTCATGTATCCTAATGAAG-GGA--ATGTATTTTGGTGCC
* * * * ** * * * *
1152924 TAATCCTGAAAAGAATGGGGATTAG-TATCAGTC-TTCATGGTTGTCTTTTTTATGAGGA-AAAC
63 TAATCCTGAAAAGAATGGAGACT-GTTAT--GACAATCATTCTTGTCATATTTAAG-GGATGAAC
*
1152986 TTTGATTCTATCAAAAATGGTGGAAATAAAAGTT
124 TTTGATTCTATCAAAAATGGTGGAAATAAAAGTA
* * * * *
1153020 TTTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAAAGAAGGGAATGTATTCTTGGTTCCCA
1 TTTCTTGCGAAACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTATT-TTGGTGCCTA
* * * * *
1153085 ATCTTGAAAAGAATGGAGACTGTTGTGACAAATGATTCTTGTCATATTTAAGGGATGAATTTTAA
65 ATCCTGAAAAGAATGGAGACTGTTATGAC-AATCATTCTTGTCATATTTAAGGGATGAACTTTGA
* * ** * *
1153150 TTTTGTGGAAAATAGG-GTAAAGAAAA-TA
129 TTCTATCAAAAAT-GGTGGAAATAAAAGTA
* * ** * * * * * * *
1153178 TTTCCATGCAAAAGAAAATCGTCAATATCATTTATCATAATG-AGGAGAATGTGTTTATAGTGCC
1 TTT-CTTGCGAAACCAAAGCATCAATGTCATGTATCCTAATGAAGG-GAATGTATTT-TGGTGCC
* * * * * * *
1153242 TAAT-CAGAAAATGAATGAAGA-TCATTACT-AGAATCCATTTTTGTC-TCATTTGAGGCATGAA
63 TAATCCTGAAAA-GAATGGAGACT-GTTA-TGACAAT-CATTCTTGTCAT-ATTTAAGGGATGAA
* * **
1153303 CTTAGACTT-TA-CAAAAATTGGTGGGAA-AAAAGCC
123 CTTTGA-TTCTATCAAAAA-TGGTGGAAATAAAAGTA
* * * ** *
1153337 TTTCTTGCAAAACCAAAGTATCAATGTCGTGTATCCTAATGAAAAG-A-CTATTTATGGTGCCTA
1 TTTCTTGCGAAACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTATTT-TGGTGCCTA
* * * * * * * *
1153400 ATGCTAAAAATAATGGGGATTAG-TATGACAATTCATGT-TTGT-ATTATTTGAGAGATAAACTT
65 ATCCTGAAAAGAATGGAGACT-GTTATGACAA-TCAT-TCTTGTCA-TATTTAAGGGATGAACTT
** * **
1153462 TGATTCTATCAAAAAACAGTGGAAAGAAAACCA
126 TGATTCTATC-AAAAATGGTGGAAATAAAAGTA
* * * * * * *
1153495 TTTCTTGTGACACCAAAGCATCAATGCCATGTACCCTAATGAAGGGAATGTGTTCTTAGTTCCTA
1 TTTCTTGCGAAACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTATT-TTGGTGCCTA
* * *
1153560 ATCTTGAAAAGAATGGAGATTGTTATGACAATCTATTCTTATCATATTTAAGGGATG-ACTTTTG
65 ATCCTGAAAAGAATGGAGACTGTTATGACAATC-ATTCTTGTCATATTTAAGGGATGAAC-TTTG
* *** * * *
1153624 ATTTTAAGGAAAATAGG-GCAAAGATAA-TA
128 ATTCTATCAAAAAT-GGTGGAAATAAAAGTA
* ** * * * * *
1153653 TTT-TCGCGCAAAAGAAAATCATAAATATCATTTATCAC-AACG-AGGAGAAT-T-TTTTGTAGT
1 TTTCTTGCG--AAACCAAAGCATCAATGTCATGTATC-CTAATGAAGG-GAATGTATTTTG--GT
* * * * * * *
1153713 GCTTAATCAC--AAAATGAATGAAGATCCTTGCTA-GA-ATTCATGT-TTGTC-TCGTTTGAGGC
60 GCCTAATC-CTGAAAA-GAATGGAGA--C-TGTTATGACAATCAT-TCTTGTCAT-ATTTAAGGG
* * **
1153772 ATGAACTTAGACTT-TA-CAAAAATTGGTGGGAA-AAAAGCC
118 ATGAACTTTGA-TTCTATCAAAAA-TGGTGGAAATAAAAGTA
* * * * * * * **
1153811 TTTCTTGTGGAACCAAAGCATCAATATCGTGTATCCTATTG-AGAAGACTAAATTTATGGTGCCT
1 TTTCTTGCGAAACCAAAGCATCAATGTCATGTATCCTAATGAAG-GGAATGTATTT-TGGTGCCT
* * * * *
1153875 AATCCTGAAAAGAATGGGGATTAG-TATG--AGTC-TTCTTGGATGTCTTATTTAAGAGGA-AAA
64 AATCCTGAAAAGAATGGAGACT-GTTATGACAATCATTC-T---TGTCATATTTAAG-GGATGAA
* * * *
1153935 ATGTGATTCTATCAAAAATGGTGAAAATAAAAGTG
123 CTTTGATTCTATCAAAAATGGTGGAAATAAAAGTA
* * * *
1153970 TTTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTATTCTTGGTTCCCA
1 TTTCTTGCGAAACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTATT-TTGGTGCCTA
*
1154035 ATCCTGAAAAGAATGGAGACTGTTACGACAATCAATTCTTGTCATATTTAAGGGATGAACTTTGA
65 ATCCTGAAAAGAATGGAGACTGTTATGACAATC-ATTCTTGTCATATTTAAGGGATGAACTTTGA
1154100 TT
129 TT
1154102 TTATGGGAAA
Statistics
Matches: 782, Mismatches: 213, Indels: 174
0.67 0.18 0.15
Matches are distributed among these distances:
153 1 0.00
154 1 0.00
155 10 0.01
156 56 0.07
157 71 0.09
158 205 0.26
159 350 0.45
160 75 0.10
161 9 0.01
162 1 0.00
163 3 0.00
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (157 bp):
TTTCTTGCGAAACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTATTTTGGTGCCTAA
TCCTGAAAAGAATGGAGACTGTTATGACAATCATTCTTGTCATATTTAAGGGATGAACTTTGATT
CTATCAAAAATGGTGGAAATAAAAGTA
Found at i:1159144 original size:477 final size:476
Alignment explanation
Indices: 1157798--1160141 Score: 3511
Period size: 476 Copynumber: 4.9 Consensus size: 476
1157788 TATCCAGATA
* ** * * * * * *
1157798 GTGGAGACTGTTGCGAGAATCGATGCTTGTCATAATTAAGGGATGTATTTTGATTTTAAGGAAAA
1 GTGGAGACTATTATGAGAATTGATACTTGTCATATTTAAGGGTTGAATTTTTATTTTAAGGAAAA
* * * * * **
1157863 TAGGGCAACGAAAATATTTTCATG-CAAA-AGAAAATCATCATTATCATTTATCCTAATGAAAAG
66 TAGAGCAAAGAAAAGATTTCCATGCCAAACA-AAAATCATCAATATCATTTATCCTAATGAGGAG
* * * * * * * *
1157926 AATGTGTTTATAGTGCCTAATCACAAAATGCATGAATATCCTTACTAGAATCCATGTTTGTCTCA
130 AATATATTTATTGTGCCTAATCACAAAATGAATGAAGATCCTTGCTAGAATTCGTGTTTGTCTCA
* * * * * **
1157991 TTTGAGGCATGAACTTAGACTTTGCAAAAATTGGCGGGAAGAAAGCCCTTCTTGCAAAACCAAAG
195 TTTGAGGCATGAACATAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGTGAAACCAAAG
** ** * *
1158056 TGTCAATATCGTGTATCCT-TCTGAGAAGACTATGTTTATGGTGCCTAATCCT-AAAAGGGATGA
260 CATCAATATCGTGTATCCTAT-TGAGAAGACTAAATTTATGGTGCCTAATCCTGAAAA-GAATGG
* * * * * * * **
1158119 GGATTGGTATGACTATTCACGTTTGTCTTATTTAAGAGACAAATGTT-GATTCTATCAAAAATGG
323 GGATTAGTATGACAATTCATGTTTGTGTTATTTAAAAGACAAAT-TTAGATTCCATAAAAAACAG
* * * * * * * * *
1158183 TGGAAAGAAAAGCTTTCCTTGCGACCCCAAAGCATCAATGTCATCTATCATAATGAAAGGAAAGT
387 TGGAAAGAAAACCTTTTCTTGTGACACCAAAGCATCAATGCCATGTATCCTAATGAAGGGAATGT
* * * * *
1158248 GTTGTTGGTTCCTAATCTTGAAAAGA
452 -TTCTTGGTTCCCAAACTTGATAAGG
* * * ** * ** * * * * * * * * * *
1158274 ATGGTGACTGTTACAATAATCAATGCTTGCCTTATTTCAGGGATGAAGTTTGATTTCAAGGGAAC
1 GTGGAGACTATTATGAGAATTGATACTTGTCATATTTAAGGGTTGAATTTTTATTTTAAGGAAAA
* * *
1158339 TA-AGGCAAAGAAAAGATTTCCAAG-CAAA-AGAAAATCATCAATATCATTTATCATAATTAGGA
66 TAGA-GCAAAGAAAAGATTTCCATGCCAAACA-AAAATCATCAATATCATTTATCCTAATGAGGA
* * * * * *
1158401 GAATGTGA-TTATAGTGCCCAATCACAAAATGAATGAAGATCCTT-ATCAGAATCCATGTTTGTC
129 GAATAT-ATTTATTGTGCCTAATCACAAAATGAATGAAGATCCTTGCT-AGAATTCGTGTTTGTC
* * *
1158464 TCATTTGAGGCATGAACCTAAACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGTGATACCA
192 TCATTTGAGGCATGAACATAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGTGAAACCA
* * * ** * * * *
1158529 AAGCATCAATATCATATATCCTAATGAGAAGACTATGTTTATCGTGCCGAATGCTGAAAATAATG
257 AAGCATCAATATCGTGTATCCTATTGAGAAGACTAAATTTATGGTGCCTAATCCTGAAAAGAATG
*
1158594 GGGATTAGTATGACAATTCATGTTTGTGTTATTTAAAATACAAATTTAGATTCCATAAAAAACAG
322 GGGATTAGTATGACAATTCATGTTTGTGTTATTTAAAAGACAAATTTAGATTCCATAAAAAACAG
1158659 TGGAAAGAAAACCTTTTCTTGTGACACCAAAGCATCAATGCCATGTATCCTAATGAAGGGAATGT
387 TGGAAAGAAAACCTTTTCTTGTGACACCAAAGCATCAATGCCATGTATCCTAATGAAGGGAATGT
1158724 TTCTTGGTTCCCAAACTTGATAAGG
452 TTCTTGGTTCCCAAACTTGATAAGG
*
1158749 GTGGAGACTATTGTGAGAATTGATACTTGTCATATTTAAGGGTTGAATTTTTATTTTAAGGAAAA
1 GTGGAGACTATTATGAGAATTGATACTTGTCATATTTAAGGGTTGAATTTTTATTTTAAGGAAAA
* *
1158814 TAGAGCAAAGAAAAGATTTCCTTGCCAAACAAAAATCATCAATATCATTTATCCTAATGAGGATA
66 TAGAGCAAAGAAAAGATTTCCATGCCAAACAAAAATCATCAATATCATTTATCCTAATGAGGAGA
1158879 ATATATTTATTGTGCCTAATCACAAAATGAATGAAGATCCTTGCTAGAATTCGTGTTTGTCTCAT
131 ATATATTTATTGTGCCTAATCACAAAATGAATGAAGATCCTTGCTAGAATTCGTGTTTGTCTCAT
1158944 TTGAGGCATGAACATAGACTTTACAAAAATTGGTGGGAAAAAAAGCCTTTCTTGTGAAACCAAAG
196 TTGAGGCATGAACATAGACTTTACAAAAATTGGTGGG-AAAAAAGCCTTTCTTGTGAAACCAAAG
* *
1159009 CATCAATATCGTGTATCTTATTGAGAAGACTAAATTTGTGGTGCCTAATCCTGAAAAGAATGGGG
260 CATCAATATCGTGTATCCTATTGAGAAGACTAAATTTATGGTGCCTAATCCTGAAAAGAATGGGG
1159074 ATTAGTATGACAATTCATGTTTGTGTTATTTAAAAGACAAATTTAGATTCCATAAAAAACAGTGG
325 ATTAGTATGACAATTCATGTTTGTGTTATTTAAAAGACAAATTTAGATTCCATAAAAAACAGTGG
1159139 AAAGAAAACCTTTTCTTGTGACACCAAAGCATCAATGCCATGTATCCTAATGAAGGGAATGTTTC
390 AAAGAAAACCTTTTCTTGTGACACCAAAGCATCAATGCCATGTATCCTAATGAAGGGAATGTTTC
1159204 TTGGTTCCCAAACTTGATAAGG
455 TTGGTTCCCAAACTTGATAAGG
1159226 GTGGAGACTATTATGAGAATTGATACTTGTCATATTTAAGGGTTGAATTTTTATTTTAAGGAAAA
1 GTGGAGACTATTATGAGAATTGATACTTGTCATATTTAAGGGTTGAATTTTTATTTTAAGGAAAA
*
1159291 TAGAGCAAAGAAAAGATTTCAATGCCAAACAAAAATCATCAATATCATTTATCCTAATGAGGAGA
66 TAGAGCAAAGAAAAGATTTCCATGCCAAACAAAAATCATCAATATCATTTATCCTAATGAGGAGA
*
1159356 ATATATTTATTGTGCCTAATCACAAAATGAATGAAGATCCTTGCTAGAATTCGTGTTTGCCTCAT
131 ATATATTTATTGTGCCTAATCACAAAATGAATGAAGATCCTTGCTAGAATTCGTGTTTGTCTCAT
*
1159421 TTGAGGCATGAATATAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGTGAAACCAAAGC
196 TTGAGGCATGAACATAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGTGAAACCAAAGC
*
1159486 ATCAATATCGTGTATCCTATTGACAAGACTAAATTTATGGTGCCTAATCCTGAAAAGAATGGGGA
261 ATCAATATCGTGTATCCTATTGAGAAGACTAAATTTATGGTGCCTAATCCTGAAAAGAATGGGGA
1159551 TTAGTATGACAATTCATGTTTGTGTTATTTAAAAGACAAATTTAGATTCCATAAAAAACAGTGGA
326 TTAGTATGACAATTCATGTTTGTGTTATTTAAAAGACAAATTTAGATTCCATAAAAAACAGTGGA
1159616 AAGAAAACCTTTTCTTGTGACACCAAAGCATCAATGCCATGTATCCTAATGAAGGGAATGTTTCT
391 AAGAAAACCTTTTCTTGTGACACCAAAGCATCAATGCCATGTATCCTAATGAAGGGAATGTTTCT
1159681 TGGTTCCCAAACTTGATAAGG
456 TGGTTCCCAAACTTGATAAGG
* *
1159702 GTGGAGACTATTCTGAGAATTGATACTTGTCATATTTAAGGGTTGAATTTTTATTTTAAGGAAAC
1 GTGGAGACTATTATGAGAATTGATACTTGTCATATTTAAGGGTTGAATTTTTATTTTAAGGAAAA
*
1159767 TAGAGCAAAGAAAAGATTTCAATGCCAAACAAAAATCATCAATATCATTTATCCTAATGAGGAGA
66 TAGAGCAAAGAAAAGATTTCCATGCCAAACAAAAATCATCAATATCATTTATCCTAATGAGGAGA
*
1159832 ATATATTTATTGTGCCTAATCACAAAATGAATGAAGATCCTTGCTAGAATTTGTGTTTGTCTCAT
131 ATATATTTATTGTGCCTAATCACAAAATGAATGAAGATCCTTGCTAGAATTCGTGTTTGTCTCAT
1159897 TTGAGGCATGAACATAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGTGAAACCAAAGC
196 TTGAGGCATGAACATAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGTGAAACCAAAGC
1159962 ATCAATATCGTGTATCCTATTGAGAAGACTAAATTTATGGTGCCTAATCCTGAAAAGAATGGGGA
261 ATCAATATCGTGTATCCTATTGAGAAGACTAAATTTATGGTGCCTAATCCTGAAAAGAATGGGGA
1160027 TTAGTATGACAATTCATGTTTGTGTTATTTAAAAGACAAATTTAGATTCCATAAAAAACAGTGGA
326 TTAGTATGACAATTCATGTTTGTGTTATTTAAAAGACAAATTTAGATTCCATAAAAAACAGTGGA
1160092 AAGAAAACCTTTTCTTGTGACACCAAAGCATCAATGCCATGTATCCTAAT
391 AAGAAAACCTTTTCTTGTGACACCAAAGCATCAATGCCATGTATCCTAAT
1160142 TGATGAAAAC
Statistics
Matches: 1722, Mismatches: 134, Indels: 24
0.92 0.07 0.01
Matches are distributed among these distances:
475 90 0.05
476 1169 0.68
477 463 0.27
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.31
Consensus pattern (476 bp):
GTGGAGACTATTATGAGAATTGATACTTGTCATATTTAAGGGTTGAATTTTTATTTTAAGGAAAA
TAGAGCAAAGAAAAGATTTCCATGCCAAACAAAAATCATCAATATCATTTATCCTAATGAGGAGA
ATATATTTATTGTGCCTAATCACAAAATGAATGAAGATCCTTGCTAGAATTCGTGTTTGTCTCAT
TTGAGGCATGAACATAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGTGAAACCAAAGC
ATCAATATCGTGTATCCTATTGAGAAGACTAAATTTATGGTGCCTAATCCTGAAAAGAATGGGGA
TTAGTATGACAATTCATGTTTGTGTTATTTAAAAGACAAATTTAGATTCCATAAAAAACAGTGGA
AAGAAAACCTTTTCTTGTGACACCAAAGCATCAATGCCATGTATCCTAATGAAGGGAATGTTTCT
TGGTTCCCAAACTTGATAAGG
Found at i:1159627 original size:158 final size:157
Alignment explanation
Indices: 1158503--1160141 Score: 733
Period size: 158 Copynumber: 10.3 Consensus size: 157
1158493 AAAATTGGTG
* * * *
1158503 GGAAA-AAAGCCTTTCTTGTGATACCAAAGCATCAATATCATATATCCTAATGAGAAGACTATGT
1 GGAAAGAAAACCTTTCTTGTGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATAT
* * * * * * *
1158567 TTATCGTGCCGAATGCTGAAAATAATGGGGATTAGTATGACAATTCATGTTTGTGTTATTTAAAA
66 TTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATGACAATTCATGTTTGTCTTATTTAAGA
*
1158632 TACAAATTTAGATTCCATAAAAAACAGT
131 GACAAATTTAGATT-CATAAAAAACAGT
* ** *
1158660 GGAAAGAAAACCTTTTCTTGTGACACCAAAGCATCAATGCCATGTATCCTAATGA-AGGGA--AT
1 GGAAAGAAAACC-TTTCTTGTGAAACCAAAGCATCAATATCATGTATCCTAATGAGA-AGACTAT
* * * * * * * ** * * * * * ** *
1158722 GTTTCTTGGTTCCCAAACTTGATAAGGGTGGAGACTATTGTGAGAATTGATACTTGTCATATTTA
64 ATTT-ATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATGACAATTCATGTTTGTCTTATTTA
* *** ** * * *
1158787 AGGGTTGAATTTTTATT-TTAAGGAAAATAGA
128 AGAGACAAATTTAGATTCATAA--AAAACAGT
* ** ** * * * * * *
1158818 GCAAAGAAAAGATTTCCTTGCCAAACAAAAATCATCAATATCATTTATCCTAATGAGGATAATAT
1 GGAAAGAAAACCTTT-CTTGTGAAAC-CAAAGCATCAATATCATGTATCCTAATGAGAAGACTAT
* * * * *
1158883 ATTTATTGTGCCTAATCAC--AAAATGAATGAAGATCCTTGCTA-G--AATTCGTGTTTGTCTCA
64 ATTTATGGTGCCTAATC-CTGAAAA-GAATGGAGAT--TAG-TATGACAATTCATGTTTGTCTTA
* ** * * ***
1158943 TTT--GAGGCATGAACATAGACTTTACAAAAATTGGT
124 TTTAAGAGACA--AATTTAGA-TTCATAAAAAACAGT
* * * *
1158978 GGGAAA-AAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTGTATCTTATTGAGAAGACTAA
1 -GGAAAGAAAA-CCTTTCTTGTGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTAT
* * *
1159042 ATTTGTGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACAATTCATGTTTGTGTTATTTAA
64 ATTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATGACAATTCATGTTTGTCTTATTTAA
*
1159107 AAGACAAATTTAGATTCCATAAAAAACAGT
129 GAGACAAATTTAGATT-CATAAAAAACAGT
* ** *
1159137 GGAAAGAAAACCTTTTCTTGTGACACCAAAGCATCAATGCCATGTATCCTAATGA-AGGGA--AT
1 GGAAAGAAAACC-TTTCTTGTGAAACCAAAGCATCAATATCATGTATCCTAATGAGA-AGACTAT
* * * * * * * ** * * * * ** *
1159199 GTTTCTTGGTTCCCAAACTTGATAAGGGTGGAGACTATTATGAGAATTGATACTTGTCATATTTA
64 ATTT-ATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATGACAATTCATGTTTGTCTTATTTA
* *** ** * * *
1159264 AGGGTTGAATTTTTATT-TTAAGGAAAATAGA
128 AGAGACAAATTTAGATTCATAA--AAAACAGT
* ** * ** * * * * *
1159295 GCAAAGAAAAGATTTCAATGCCAAACAAAAATCATCAATATCATTTATCCTAATGAGGAGAATAT
1 GGAAAGAAAACCTTTC-TTGTGAAAC-CAAAGCATCAATATCATGTATCCTAATGAGAAGACTAT
* * * * * *
1159360 ATTTATTGTGCCTAATCAC--AAAATGAATGAAGATCCTTGCTA-G--AATTCGTGTTTGCCTCA
64 ATTTATGGTGCCTAATC-CTGAAAA-GAATGGAGAT--TAG-TATGACAATTCATGTTTGTCTTA
* * * * ***
1159420 TTT--GAGGCATGAATATAGACTTTACAAAAATTGGT
124 TTTAAGAGACA--AATTTAGA-TTCATAAAAAACAGT
* * * * *
1159455 GGGAAA-AAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTGTATCCTATTGACAAGACTAAA
1 -GGAAAGAAAACCTTTCTTGTGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATA
* * *
1159519 TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACAATTCATGTTTGTGTTATTTAAA
65 TTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATGACAATTCATGTTTGTCTTATTTAAG
1159584 AGACAAATTTAGATTCCATAAAAAACAGT
130 AGACAAATTTAGATT-CATAAAAAACAGT
* ** *
1159613 GGAAAGAAAACCTTTTCTTGTGACACCAAAGCATCAATGCCATGTATCCTAATGA-AGGGA--AT
1 GGAAAGAAAACC-TTTCTTGTGAAACCAAAGCATCAATATCATGTATCCTAATGAGA-AGACTAT
* * * * * * * ** * * * * * ** *
1159675 GTTTCTTGGTTCCCAAACTTGATAAGGGTGGAGACTATTCTGAGAATTGATACTTGTCATATTTA
64 ATTT-ATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATGACAATTCATGTTTGTCTTATTTA
* *** ** * * *
1159740 AGGGTTGAATTTTTATT-TTAAGGAAACTAGA
128 AGAGACAAATTTAGATTCATAA-AAAAC-AGT
* ** * ** * * * * *
1159771 GCAAAGAAAAGATTTCAATGCCAAACAAAAATCATCAATATCATTTATCCTAATGAGGAGAATAT
1 GGAAAGAAAACCTTTC-TTGTGAAAC-CAAAGCATCAATATCATGTATCCTAATGAGAAGACTAT
* * * ** *
1159836 ATTTATTGTGCCTAATCAC--AAAATGAATGAAGATCCTTGCTA-G--AATTTGTGTTTGTCTCA
64 ATTTATGGTGCCTAATC-CTGAAAA-GAATGGAGAT--TAG-TATGACAATTCATGTTTGTCTTA
* ** * * ***
1159896 TTT--GAGGCATGAACATAGACTTTACAAAAATTGGT
124 TTTAAGAGACA--AATTTAGA-TTCATAAAAAACAGT
* * * *
1159931 GGGAAA-AAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTGTATCCTATTGAGAAGACTAAA
1 -GGAAAGAAAACCTTTCTTGTGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATA
* * *
1159995 TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACAATTCATGTTTGTGTTATTTAAA
65 TTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATGACAATTCATGTTTGTCTTATTTAAG
1160060 AGACAAATTTAGATTCCATAAAAAACAGT
130 AGACAAATTTAGATT-CATAAAAAACAGT
* **
1160089 GGAAAGAAAACCTTTTCTTGTGACACCAAAGCATCAATGCCATGTATCCTAAT
1 GGAAAGAAAACC-TTTCTTGTGAAACCAAAGCATCAATATCATGTATCCTAAT
1160142 TGATGAAAAC
Statistics
Matches: 1034, Mismatches: 358, Indels: 178
0.66 0.23 0.11
Matches are distributed among these distances:
155 4 0.00
156 17 0.02
157 53 0.05
158 413 0.40
159 344 0.33
160 145 0.14
161 42 0.04
162 12 0.01
163 4 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (157 bp):
GGAAAGAAAACCTTTCTTGTGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATAT
TTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATGACAATTCATGTTTGTCTTATTTAAGA
GACAAATTTAGATTCATAAAAAACAGT
Found at i:1159893 original size:953 final size:951
Alignment explanation
Indices: 1157798--1160141 Score: 3506
Period size: 953 Copynumber: 2.5 Consensus size: 951
1157788 TATCCAGATA
* * * * * * *
1157798 GTGGAGACTGTTGC-GAGAATCGATGCTTGTCATAATTAAGGGATGTATTTTGATTTTAAGGAAA
1 GTGGAGACTATT-CTGAGAATTGATACTTGTCATATTTAAGGGTTGAATTTTTATTTTAAGGAAA
* * * * **
1157862 ATAGGGCAACGAAAATATTTTCATG-CAAA-AGAAAATCATCATTATCATTTATCCTAATGAAAA
65 ATAGAGCAAAGAAAAGA-TTTCATGCCAAACA-AAAATCATCAATATCATTTATCCTAATGAGGA
* * * * * * * *
1157925 GAATGTGTTTATAGTGCCTAATCACAAAATGCATGAATATCCTTACTAGAATCCATGTTTGTCTC
128 GAATATATTTATTGTGCCTAATCACAAAATGAATGAAGATCCTTGCTAGAATTCGTGTTTGTCTC
* * * * * **
1157990 ATTTGAGGCATGAACTTAGACTTTGCAAAAATTGGCGGGAAGAAAGCCCTTCTTGCAAAACCAAA
193 ATTTGAGGCATGAACATAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGTGAAACCAAA
** * ** *
1158055 GTGTCAATATCGTGTATCCTT-CTGAGAAGACTATGTTTATGGTGCCTAATCCT-AAAAGGGATG
258 GCATCAATATCGTGTAT-CTTATTGAGAAGACTAAATTTATGGTGCCTAATCCTGAAAA-GAATG
* * * * * * * * **
1158118 AGGATTGGTATGACTATTCACGTTTGTCTTATTTAAGAGACAAATGTT-GATTCTATCAAAAATG
321 GGGATTAGTATGACAATTCATGTTTGTGTTATTTAAAAGACAAAT-TTAGATTCCATAAAAAACA
* * * * * * *
1158182 GTGGAAAGAAAAGCTTTCCTTGCGACCCCAAAGCATCAATGTCATCTATCATAATGAAAGGAAAG
385 GTGGAAAGAAAACCTTTTCTTGTGACACCAAAGCATCAATGCCATGTATCCTAATGAAAGGAAAG
* * * * * * * * *
1158247 TGTTGTTGGTTCCTAATCTTGAAAAGAATGGTGACTGTTACAATAATCAATGCTTGCCTTATTTC
450 TGTTCTTGGTTCCCAAACTTGAAAAGAATGGAGACTATTACAAGAATCAATACTTGCCATATTTA
* *
1158312 AGGGATGAAGTTTGATTTCAAGGGAACTAAGGCAAAGAAAAGATTTCCAAGCAAAAGAAAATCAT
515 AGGGATGAAGTTTGATTTCAAGGAAAATAAGGCAAAGAAAAGATTTCCAAGCAAAAGAAAATCAT
* *
1158377 CAATATCATTTATCATAATTAGGAGAATGTGATTATAGTGCCCAATCACAAAATGAATGAAGATC
580 CAATATCATTTATCATAATGAGGAGAATATGATTATAGTGCCCAATCACAAAATGAATGAAGATC
* *
1158442 CTTATCAGAATCCATGTTTGTCTCATTTGAGGCATGAACCTAAACTTTACAAAAATTGGTGGGAA
645 CTTATCAGAATCCATGTTTGCCTCATTTGAGGCATGAACATAAACTTTACAAAAATTGGTGGGAA
* * **
1158507 AAAAGCCTTTCTTGTGATACCAAAGCATCAATATCATATATCCTAATGAGAAGACTATGTTTATC
710 AAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCATATATCCTAATGACAAGACTAAATTTATC
* * *
1158572 GTGCCGAATGCTGAAAATAATGGGGATTAGTATGACAATTCATGTTTGTGTTATTTAAAATACAA
775 GTGCCGAATCCTGAAAAGAATGGGGATTAGTATGACAATTCATGTTTGTGTTATTTAAAAGACAA
1158637 ATTTAGATTCCATAAAAAACAGTGGAAAGAAAACCTTTTCTTGTGACACCAAAGCATCAATGCCA
840 ATTTAGATTCCATAAAAAACAGTGGAAAGAAAACCTTTTCTTGTGACACCAAAGCATCAATGCCA
1158702 TGTATCCTAATGAAGGGAATGTTTCTTGGTTCCCAAACTTGATAAGG
905 TGTATCCTAATGAAGGGAATGTTTCTTGGTTCCCAAACTTGATAAGG
*
1158749 GTGGAGACTATTGTGAGAATTGATACTTGTCATATTTAAGGGTTGAATTTTTATTTTAAGGAAAA
1 GTGGAGACTATTCTGAGAATTGATACTTGTCATATTTAAGGGTTGAATTTTTATTTTAAGGAAAA
* *
1158814 TAGAGCAAAGAAAAGATTTCCTTGCCAAACAAAAATCATCAATATCATTTATCCTAATGAGGATA
66 TAGAGCAAAGAAAAGATTT-CATGCCAAACAAAAATCATCAATATCATTTATCCTAATGAGGAGA
1158879 ATATATTTATTGTGCCTAATCACAAAATGAATGAAGATCCTTGCTAGAATTCGTGTTTGTCTCAT
130 ATATATTTATTGTGCCTAATCACAAAATGAATGAAGATCCTTGCTAGAATTCGTGTTTGTCTCAT
1158944 TTGAGGCATGAACATAGACTTTACAAAAATTGGTGGGAAAAAAAGCCTTTCTTGTGAAACCAAAG
195 TTGAGGCATGAACATAGACTTTACAAAAATTGGTGGG-AAAAAAGCCTTTCTTGTGAAACCAAAG
*
1159009 CATCAATATCGTGTATCTTATTGAGAAGACTAAATTTGTGGTGCCTAATCCTGAAAAGAATGGGG
259 CATCAATATCGTGTATCTTATTGAGAAGACTAAATTTATGGTGCCTAATCCTGAAAAGAATGGGG
1159074 ATTAGTATGACAATTCATGTTTGTGTTATTTAAAAGACAAATTTAGATTCCATAAAAAACAGTGG
324 ATTAGTATGACAATTCATGTTTGTGTTATTTAAAAGACAAATTTAGATTCCATAAAAAACAGTGG
* *
1159139 AAAGAAAACCTTTTCTTGTGACACCAAAGCATCAATGCCATGTATCCTAATGAAGGGAATGT-TT
389 AAAGAAAACCTTTTCTTGTGACACCAAAGCATCAATGCCATGTATCCTAATGAAAGGAAAGTGTT
* ** ** ** *
1159203 CTTGGTTCCCAAACTTGATAAGGGTGGAGACTATTATGAGAATTGATACTTGTCATATTTAAGGG
454 CTTGGTTCCCAAACTTGAAAAGAATGGAGACTATTACAAGAATCAATACTTGCCATATTTAAGGG
* * * *
1159268 TTGAATTTTTATTTTAAGGAAAAT-AGAGCAAAGAAAAGATTT-CAATGCCAAACA-AAAATCAT
519 ATGAAGTTTGATTTCAAGGAAAATAAG-GCAAAGAAAAGATTTCCAA-G-CAAA-AGAAAATCAT
* * *
1159330 CAATATCATTTATCCTAATGAGGAGAATAT-ATTTATTGTGCCTAATCACAAAATGAATGAAGAT
580 CAATATCATTTATCATAATGAGGAGAATATGA-TTATAGTGCCCAATCACAAAATGAATGAAGAT
* * * * *
1159394 CCTT-GCTAGAATTCGTGTTTGCCTCATTTGAGGCATGAATATAGACTTTACAAAAATTGGTGGG
644 CCTTATC-AGAATCCATGTTTGCCTCATTTGAGGCATGAACATAAACTTTACAAAAATTGGTGGG
* * *
1159458 AAAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTGTATCCTATTGACAAGACTAAATTTA
708 AAAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCATATATCCTAATGACAAGACTAAATTTA
* *
1159523 TGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACAATTCATGTTTGTGTTATTTAAAAGAC
773 TCGTGCCGAATCCTGAAAAGAATGGGGATTAGTATGACAATTCATGTTTGTGTTATTTAAAAGAC
1159588 AAATTTAGATTCCATAAAAAACAGTGGAAAGAAAACCTTTTCTTGTGACACCAAAGCATCAATGC
838 AAATTTAGATTCCATAAAAAACAGTGGAAAGAAAACCTTTTCTTGTGACACCAAAGCATCAATGC
1159653 CATGTATCCTAATGAAGGGAATGTTTCTTGGTTCCCAAACTTGATAAGG
903 CATGTATCCTAATGAAGGGAATGTTTCTTGGTTCCCAAACTTGATAAGG
*
1159702 GTGGAGACTATTCTGAGAATTGATACTTGTCATATTTAAGGGTTGAATTTTTATTTTAAGGAAAC
1 GTGGAGACTATTCTGAGAATTGATACTTGTCATATTTAAGGGTTGAATTTTTATTTTAAGGAAAA
1159767 TAGAGCAAAGAAAAGATTTCAATGCCAAACAAAAATCATCAATATCATTTATCCTAATGAGGAGA
66 TAGAGCAAAGAAAAGATTTC-ATGCCAAACAAAAATCATCAATATCATTTATCCTAATGAGGAGA
*
1159832 ATATATTTATTGTGCCTAATCACAAAATGAATGAAGATCCTTGCTAGAATTTGTGTTTGTCTCAT
130 ATATATTTATTGTGCCTAATCACAAAATGAATGAAGATCCTTGCTAGAATTCGTGTTTGTCTCAT
1159897 TTGAGGCATGAACATAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGTGAAACCAAAGC
195 TTGAGGCATGAACATAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGTGAAACCAAAGC
*
1159962 ATCAATATCGTGTATCCTATTGAGAAGACTAAATTTATGGTGCCTAATCCTGAAAAGAATGGGGA
260 ATCAATATCGTGTATCTTATTGAGAAGACTAAATTTATGGTGCCTAATCCTGAAAAGAATGGGGA
1160027 TTAGTATGACAATTCATGTTTGTGTTATTTAAAAGACAAATTTAGATTCCATAAAAAACAGTGGA
325 TTAGTATGACAATTCATGTTTGTGTTATTTAAAAGACAAATTTAGATTCCATAAAAAACAGTGGA
1160092 AAGAAAACCTTTTCTTGTGACACCAAAGCATCAATGCCATGTATCCTAAT
390 AAGAAAACCTTTTCTTGTGACACCAAAGCATCAATGCCATGTATCCTAAT
1160142 TGATGAAAAC
Statistics
Matches: 1267, Mismatches: 111, Indels: 29
0.90 0.08 0.02
Matches are distributed among these distances:
950 3 0.00
951 77 0.06
952 423 0.33
953 759 0.60
954 5 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.31
Consensus pattern (951 bp):
GTGGAGACTATTCTGAGAATTGATACTTGTCATATTTAAGGGTTGAATTTTTATTTTAAGGAAAA
TAGAGCAAAGAAAAGATTTCATGCCAAACAAAAATCATCAATATCATTTATCCTAATGAGGAGAA
TATATTTATTGTGCCTAATCACAAAATGAATGAAGATCCTTGCTAGAATTCGTGTTTGTCTCATT
TGAGGCATGAACATAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGTGAAACCAAAGCA
TCAATATCGTGTATCTTATTGAGAAGACTAAATTTATGGTGCCTAATCCTGAAAAGAATGGGGAT
TAGTATGACAATTCATGTTTGTGTTATTTAAAAGACAAATTTAGATTCCATAAAAAACAGTGGAA
AGAAAACCTTTTCTTGTGACACCAAAGCATCAATGCCATGTATCCTAATGAAAGGAAAGTGTTCT
TGGTTCCCAAACTTGAAAAGAATGGAGACTATTACAAGAATCAATACTTGCCATATTTAAGGGAT
GAAGTTTGATTTCAAGGAAAATAAGGCAAAGAAAAGATTTCCAAGCAAAAGAAAATCATCAATAT
CATTTATCATAATGAGGAGAATATGATTATAGTGCCCAATCACAAAATGAATGAAGATCCTTATC
AGAATCCATGTTTGCCTCATTTGAGGCATGAACATAAACTTTACAAAAATTGGTGGGAAAAAAGC
CTTTCTTGTGAAACCAAAGCATCAATATCATATATCCTAATGACAAGACTAAATTTATCGTGCCG
AATCCTGAAAAGAATGGGGATTAGTATGACAATTCATGTTTGTGTTATTTAAAAGACAAATTTAG
ATTCCATAAAAAACAGTGGAAAGAAAACCTTTTCTTGTGACACCAAAGCATCAATGCCATGTATC
CTAATGAAGGGAATGTTTCTTGGTTCCCAAACTTGATAAGG
Found at i:1161807 original size:42 final size:42
Alignment explanation
Indices: 1161757--1161863 Score: 160
Period size: 42 Copynumber: 2.5 Consensus size: 42
1161747 AGAAAGAATT
*
1161757 GAGAGGAGGGATGATAGGAGGAGAGACACGAGAGATAGTAAA
1 GAGAGGAGGGATGATAGGAGGAGAGACACGAGAGATAATAAA
* * * *
1161799 GATAGGAGGGATGATAGGAGGAGAGATAGGAGAGATAATAGA
1 GAGAGGAGGGATGATAGGAGGAGAGACACGAGAGATAATAAA
*
1161841 GAGAGGAGGGATGACAGGAGGAG
1 GAGAGGAGGGATGATAGGAGGAG
1161864 GAGAGAAGAA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 58 1.00
ACGTcount: A:0.41, C:0.03, G:0.46, T:0.10
Consensus pattern (42 bp):
GAGAGGAGGGATGATAGGAGGAGAGACACGAGAGATAATAAA
Found at i:1161839 original size:12 final size:12
Alignment explanation
Indices: 1161799--1161844 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
1161789 AGATAGTAAA
*
1161799 GATAGGAGGGAT
1 GATAGGAGAGAT
1161811 GATAGGAGGAGA-
1 GATAGGA-GAGAT
1161823 GATAGGAGAGAT
1 GATAGGAGAGAT
*
1161835 AATA-GAGAGA
1 GATAGGAGAGA
1161845 GGAGGGATGA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
11 10 0.33
12 17 0.57
13 3 0.10
ACGTcount: A:0.43, C:0.00, G:0.43, T:0.13
Consensus pattern (12 bp):
GATAGGAGAGAT
Found at i:1168820 original size:474 final size:474
Alignment explanation
Indices: 1167764--1170000 Score: 2519
Period size: 474 Copynumber: 4.7 Consensus size: 474
1167754 ACATGTATCC
* * * * * *
1167764 AAAGAGTGAAGACTGTTGCGAGAATCAATGCTTGTCATAATTAAGGGATGTATTTTGATTTTAAG
1 AAAGAATGGAGACTGTTACAAGAATCAATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAG
* *
1167829 GAAAATA-AGACAATGAAAAGATTTCCATGCAAAAGAAAATCATCATTATCATTTATCCTAACGA
66 GAAAATAGAG-CAAAGAAAAGATTTCCATGCAAAAGAAAATCATCATTATCATTTATCCTAATGA
* * * *
1167893 GGAGAATGTCTTTATAGTGCTTAATCACAAAATGAATGAATATCTTTACTAGAATCCATGTTTGT
130 GGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG-
* ** *
1167958 CTCATTTAAGGCATGAACTTAGACTTTGCAAAAATTCATGGGAAGAAAGCCTTTCTTGCGAAACC
194 -TCATTTGAGGCATGAACTTAGACTTTGCAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACC
* * *
1168023 AAATTGTCAATATCGTGTATCCTTGTCAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAAT
258 AAAGTGTCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAAT
* * * * * * *
1168088 GAGGATTGGCATGACTATTCACATTTGTCTTATTTAAGAGACAAA-TGTTCATTCTATCAAAAAC
323 GGGGATTAGTATGACGATTCATATTTGTCTTATTTAAAAGACAAACT-TTGATTCTATCAAAAAC
* * * * * * *
1168152 GGTGGAAAAAAAAGCTTTTCTTGCGACCCCAAAGCATTAATGTCATCTATCATAATGGAAGGAAA
387 AGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT-GAAGGGAA
1168217 GTGT-TT-TTGGTTCCCAATCTTGA
451 -TGTATTCTTGGTTCCCAATCTTGA
* * * * * * * **
1168240 AAAGAATGGAGACTATTACAATAATCAATGCTTGCCTTATTTCAGGGATAAAGTTTGATTTCGAG
1 AAAGAATGGAGACTGTTACAAGAATCAATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAG
* * * * * * * *
1168305 GGACATA-AGGCAAAGAAAAGATTTTCAAGCGAAAGAAAATCATCAATATCATTTATCATAATTA
66 GAAAATAGA-GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCATTATCATTTATCCTAATGA
* * * *
1168369 GGAGAATGTTTTTATAGTGCCCAATCACAAAATGAATGAAGATCCTTACTAGAATCTATGTTTGT
130 GGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGT
* * * ** *
1168434 CATTTGAGGCATGAACTTAGACTTTACACAAATTGGTGGGAAAAAAGCCTTTCTTGTGATACCAA
195 CATTTGAGGCATGAACTTAGACTTTGCAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAA
* ** * * * * *
1168499 GGCATCAATATCGTATATCCTAATGAGAAGACTATGTTTATCGTGCCTAATGCTAACAAGAATGG
260 AGTGTCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGG
* * * * *
1168564 GGATTAGTATGACGATTAATGTTTGTGTTATTTAAAAGACAAATTTTGATTCTATAAAAAACAGT
325 GGATTAGTATGACGATTCATATTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACAGT
* * *
1168629 GGAAAGAAAACCTTTTCTTGTGACACCAAAGCATCAATGCCATGTATCCTAATGAAGGGAATGT-
390 GGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTA
1168693 TTCTTGGTTCCCAATCTTGA
455 TTCTTGGTTCCCAATCTTGA
** * *** * * * * *
1168713 AAAGGGTGGAGACTATTGTGAGAATCGATACTTGTCATATTTAAGGGTTGAATTTTTATTTCAAG
1 AAAGAATGGAGACTGTTACAAGAATCAATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAG
* *
1168778 GAAAATAGAGCAAAGAAAAGATTTCCATGCCAAAAAAAAATCATCAATATCATTTATCCTAATGA
66 GAAAATAGAGCAAAGAAAAGATTTCCATG-CAAAAGAAAATCATCATTATCATTTATCCTAATGA
* *
1168843 GGAGAATATGTTTATTGTGCCTAATCACAAAATGAATGAAGATCATTACT-GAAATCCATGTTTC
130 GGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAG-AATCCATGTTT-
* * * * * * **
1168907 CCTAATTTAAGGCACGAACTTAGACTTTGCAAAAATTGGCGGCAAGAAAGAATTTCTTGCAAAAC
193 -GTCATTTGAGGCATGAACTTAGACTTTGCAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAAC
*
1168972 GAAAGTGTCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAA
257 CAAAGTGTCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAA
** * *
1169037 TGGGGATTAGTATGA-GTATTCATGGTTATCTTATTTAAGAGGA-AAACTTTGATTCTATC-AAA
322 TGGGGATTAGTATGACG-ATTCATATTTGTCTTATTTAA-AAGACAAACTTTGATTCTATCAAAA
* * * * * * *
1169099 ACTGGTGGAAATAAAGGTTTTTCTTGCG--A-CAAAGCTTCAATGTCATGCATCCTAATGATGGG
385 AC-AGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGG
1169161 AATGTATTCTTGGTTCCCAATCTTGA
449 AATGTATTCTTGGTTCCCAATCTTGA
* * * * *
1169187 AAACAATGGAGTCTGTTAC-AGCAATCGATCCTTGTCATATTTAAGGAATGAATTTTGATTTTAA
1 AAAGAATGGAGACTGTTACAAG-AATCAATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAA
* * * * *
1169251 GAAAAATAGGGCAATGAAAAGTTTTCCATGCAGAAGAAAATCATCATTATCATTTATCCTAATGA
65 GGAAAATAGAGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCATTATCATTTATCCTAATGA
* * * * * * * *
1169316 GGAGAATGTGTTTATATTACCTAATCTCAAAAGGAATGAAAATCCTTGCTAGAATTCATGTTTGT
130 GGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGT
* * * * * * * *
1169381 CTTATTTGAGTCATGAACTTGGACTCTACAAAAATTTGTGGGAAAAAAGCCTTTCTTGCCACACC
195 C--ATTTGAGGCATGAACTTAGACTTTGCAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACC
** * * * *
1169446 AAAGCATCAAATAT--TGTATCCTTATCAGAAGATTGTGTTTATGGTGCCTAATCCTAAAAAAAA
258 AAAGTGTC-AATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAA
* * * * *
1169509 TGGCGATTGGAATGACTATTCATATTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAC
322 TGGGGATTAGTATGACGATTCATATTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAAC
* ** * * * * *
1169574 AGTGGAAAGAGAAGCTTTTCTTATGACCCCAAAGCATCAATGTCATTTGTCTTAATGAAAGGAAT
387 AGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAAT
* * *
1169639 GTGTTTTTGGTTTCCAATCTTGA
452 GTATTCTTGGTTCCCAATCTTGA
* * * * * * * * *
1169662 AATGAATGGAGATTGTTACAAGAATTAGTGCTAGCCTTATTTCAA-AGATGAATTTTGATTTTAT
1 AAAGAATGGAGACTGTTACAAGAATCAATGCTTGTCATATTT-AAGGGATGAATTTTGATTTTAA
* * ** * *
1169726 GGAAAATAGGGCAAAGAAAAGATTTTCAACCAAAAGAAAAGCATCATTATCATTTATCTTAATGA
65 GGAAAATAGAGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCATTATCATTTATCCTAATGA
*
1169791 GGAGAATGTGTTTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGT
130 GGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG-
* ** *
1169856 CTCATTCGAGGCACAAACTTAGACTTTGCAAAAATTGGTGTGAAGAAAGCCTTTCTTGCAAAACC
194 -TCATTTGAGGCATGAACTTAGACTTTGCAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACC
* * * *
1169921 AAAGTGTCAATATTGTGTATCCTTATGAGATGACTATGTTTTTGGTGCCTAACCCTAAAAAGAAT
258 AAAGTGTCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAAT
1169986 GGGGATTAGTATGAC
323 GGGGATTAGTATGAC
1170001 TCTCCATGGT
Statistics
Matches: 1456, Mismatches: 276, Indels: 58
0.81 0.15 0.03
Matches are distributed among these distances:
471 3 0.00
472 114 0.08
473 274 0.19
474 402 0.28
475 267 0.18
476 390 0.27
477 6 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (474 bp):
AAAGAATGGAGACTGTTACAAGAATCAATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAG
GAAAATAGAGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCATTATCATTTATCCTAATGAG
GAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTC
ATTTGAGGCATGAACTTAGACTTTGCAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAA
GTGTCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGG
GATTAGTATGACGATTCATATTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACAGTG
GAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTAT
TCTTGGTTCCCAATCTTGA
Found at i:1169849 original size:948 final size:946
Alignment explanation
Indices: 1167799--1170031 Score: 2788
Period size: 948 Copynumber: 2.4 Consensus size: 946
1167789 CAATGCTTGT
* * * * * * **
1167799 CATAATTAAGGGATGTATTTTGATTTTAAGGAAAATAAGACAATGAAAAGATTTCCATGCAAAAG
1 CATATTTAAGAGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCAACCAAAAG
* * *
1167864 AAAATCATCATTATCATTTATCCTAACGAGGAGAATGTCTTTATAGTGCTTAATCACAAAATGAA
66 AAAATCATCATTATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * *
1167929 TGAATATCTTTACTAGAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTGCAAAAATT
131 TGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTAGACTTTGCAAAAATT
** * * * *
1167994 CATGGGAAGAAAGCCTTTCTTGCGAAACCAAATTGTCAATATCGTGTATCCTTGTCAGAAGACTA
196 GGT-GGAAGAAAGCCTTTCTTGCAAAACCAAAGTGTCAATATCGTGTATCCTTATGAGAAGACTA
* * * ***
1168059 TGTTTATGGTGCCTAATCCTAAAAAGAATGAGGATTGGCATGACTATTCACATTTGTCTTATTTA
260 TGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGGTTGTCTTATTTA
1168124 AGA-GACAAA-TGTTCATTCTATCAAAAACGGTGGAAAAAAAAGCTTTTCTTGCGACCCCAAAGC
325 AGAGGA-AAACTGTTCATTCTATCAAAAACGGTGGAAAAAAAAGCTTTTCTTGCGA--CCAAAGC
*
1168187 ATTAATGTCATCTATCATAATGGAAGGAAAGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGA
387 ATTAATGTCATCTATCATAATGGAAGGAAAGTGTTTTTGGTTCCCAATCTTGAAAACAATGGAGA
* * * * * * ** *
1168252 CTATTACAATAATCAATGCTTGCCTTATTTCAGGGATAAAGTTTGATTTCGAGGGACATAAGGCA
452 CTATTACAACAATCAATCCTTGCCATATTTAAGGAATAAAGTTTGATTTCAAGAAAAATAAGGCA
* *
1168317 AAGAAAAGATTTTCAAGCGAAAGAAAATCATCAATATCATTTATCATAATTAGGAGAATGTTTTT
517 AAGAAAAGATTTTCAAGCGAAAGAAAATCATCAATATCATTTATCATAATGAGGAGAATGTGTTT
* * *
1168382 ATAGTGCCCAATCACAAAATGAATGAAGATCCTTACTAGAATCTATGTTTGTCATTTGAGGCATG
582 ATAGTACCCAATCACAAAAGGAATGAAAATCCTTACTAGAATCTATGTTTGTCATTTGAGGCATG
* * ** * *
1168447 AACTTAGACTTTACACAAATTGGTGGGAAAAAAGCCTTTCTTGTGATACCAAGGCATCAATATCG
647 AACTTAGACTCTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCCACACCAAAGCATCAATATC-
* * * * * *
1168512 TATATCCTAATGAGAAGACTATGTTTATCGTGCCTAATGCTAACAAGAATGGGGATTAGTATGAC
711 TATATCCTAATCAGAAGACTATGTTTATCGTGCCTAATCCTAAAAAAAATGGCGATTAGAATGAC
* * *
1168577 GATTAATGTTTGTGTTATTTAAAAGACAAATTTTGATTCTATAAAAAACAGTGGAAAGAAAACCT
776 GATTAATATTTGTCTTATTTAAAAGACAAACTTTGATTCTATAAAAAACAGTGGAAAGAAAACCT
* *
1168642 TTTCTTGTGACACCAAAGCATCAATGCCATGTATCCTAATGAAGGGAATGTTTCTTGGTTCCCAA
841 TTTCTTATGACACCAAAGCATCAATGCCATGTATCCTAATGAAAGGAATGTTTCTTGGTTCCCAA
** *** * * *
1168707 TCTTGAAAAGGGTGGAGACTATTGTGAGAATCGATACTTGT
906 TCTTGAAAAGAATGGAGACTATTACAAGAATAGATACTAGC
* * * * * *
1168748 CATATTTAAGGGTTGAATTTTTATTTCAAGGAAAATAGAGCAAAGAAAAGATTTCCATGCCAAAA
1 CATATTTAAGAGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCA-ACCAAAA
* * * *
1168813 AAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATTGTGCCTAATCACAAAATGA
65 GAAAATCATCATTATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
** *
1168878 ATGAAGATCATTACT-GAAATCCATGTTTCCCTAATTTAAGGCACGAACTTAGACTTTGCAAAAA
130 ATGAAGATCATTACTAG-AATCCATGTTTGTCTCATTTAAGGCACGAACTTAGACTTTGCAAAAA
* ** *
1168942 TTGGCGGCAAGAAAGAATTTCTTGCAAAACGAAAGTGTCAATATCGTGTATCCTTATGAGAAGAC
194 TTGGTGG-AAGAAAGCCTTTCTTGCAAAACCAAAGTGTCAATATCGTGTATCCTTATGAGAAGAC
* *
1169007 TATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGGTTATCTTATT
258 TATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGGTTGTCTTATT
* * * *
1169072 TAAGAGGAAAACT-TTGATTCTATC-AAAACTGGTGGAAATAAAGGTTTTTCTTGCGA-CAAAGC
323 TAAGAGGAAAACTGTTCATTCTATCAAAAAC-GGTGGAAAAAAAAGCTTTTCTTGCGACCAAAGC
* * *
1169134 -TTCAATGTCATGC-ATCCTAAT-GATGGGAA-TGTATTCTTGGTTCCCAATCTTGAAAACAATG
387 ATT-AATGTCAT-CTATCATAATGGAAGGAAAGTGT-TT-TTGGTTCCCAATCTTGAAAACAATG
* * * * * * * * *
1169195 GAGTCTGTTACAGCAATCGATCCTTGTCATATTTAAGGAATGAATTTTGATTTTAAGAAAAATAG
448 GAGACTATTACAACAATCAATCCTTGCCATATTTAAGGAATAAAGTTTGATTTCAAGAAAAATAA
* * * *
1169260 GGCAATGAAAAG-TTTTCCATGC-AGAAGAAAATCATCATTATCATTTATCCTAATGAGGAGAAT
513 GGCAAAGAAAAGATTTT-CAAGCGA-AAGAAAATCATCAATATCATTTATCATAATGAGGAGAAT
* * * *
1169323 GTGTTTATATTACCTAATCTCAAAAGGAATGAAAATCCTTGCTAGAAT-TCATGTTTGTCTTATT
576 GTGTTTATAGTACCCAATCACAAAAGGAATGAAAATCCTTACTAGAATCT-ATGTTTGTC--ATT
* * *
1169387 TGAGTCATGAACTTGGACTCTACAAAAATTTGTGGGAAAAAAGCCTTTCTTGCCACACCAAAGCA
638 TGAGGCATGAACTTAGACTCTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCCACACCAAAGCA
* * * * *
1169452 TCAAATAT-TGTATCCTTATCAGAAGATTGTGTTTATGGTGCCTAATCCTAAAAAAAATGGCGAT
703 TC-AATATCTATATCCTAATCAGAAGACTATGTTTATCGTGCCTAATCCTAAAAAAAATGGCGAT
* * * * *
1169516 TGGAATGACTATTCATATTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAA
767 TAGAATGACGATTAATATTTGTCTTATTTAAAAGACAAACTTTGATTCTATAAAAAACAGTGGAA
* * * * * * * *
1169581 AGAGAAGCTTTTCTTATGACCCCAAAGCATCAATGTCATTTGTCTTAATGAAAGGAATGTGTTTT
832 AGAAAACCTTTTCTTATGACACCAAAGCATCAATGCCATGTATCCTAATGAAAGGAATGT-TTCT
* * * * *
1169646 TGGTTTCCAATCTTGAAATGAATGGAGATTGTTACAAGAATTAG-TGCTAGC
896 TGGTTCCCAATCTTGAAAAGAATGGAGACTATTACAAGAA-TAGATACTAGC
* * *
1169697 CTTATTTCAA-AGATGAATTTTGATTTTATGGAAAATAGGGCAAAGAAAAGATTTTCAACCAAAA
1 CATATTT-AAGAGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCAACCAAAA
* * *
1169761 GAAAAGCATCATTATCATTTATCTTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATAA
65 GAAAATCATCATTATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
** *
1169826 ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTCGAGGCACAAACTTAGACTTTGCAAAAAT
130 ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTAGACTTTGCAAAAAT
* *
1169891 TGGTGTGAAGAAAGCCTTTCTTGCAAAACCAAAGTGTCAATATTGTGTATCCTTATGAGATGACT
195 TGGTG-GAAGAAAGCCTTTCTTGCAAAACCAAAGTGTCAATATCGTGTATCCTTATGAGAAGACT
* * * *
1169956 ATGTTTTTGGTGCCTAACCCTAAAAAGAATGGGGATTAGTATGACTCTCCATGGTTGTCTTATTT
259 ATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGGTTGTCTTATTT
*
1170021 AAGAGGCAAAC
324 AAGAGGAAAAC
1170032 ATCAATGTCA
Statistics
Matches: 1096, Mismatches: 167, Indels: 43
0.84 0.13 0.03
Matches are distributed among these distances:
945 3 0.00
946 16 0.01
947 192 0.18
948 401 0.37
949 203 0.19
950 278 0.25
951 3 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (946 bp):
CATATTTAAGAGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCAACCAAAAG
AAAATCATCATTATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
TGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTAGACTTTGCAAAAATT
GGTGGAAGAAAGCCTTTCTTGCAAAACCAAAGTGTCAATATCGTGTATCCTTATGAGAAGACTAT
GTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGGTTGTCTTATTTAA
GAGGAAAACTGTTCATTCTATCAAAAACGGTGGAAAAAAAAGCTTTTCTTGCGACCAAAGCATTA
ATGTCATCTATCATAATGGAAGGAAAGTGTTTTTGGTTCCCAATCTTGAAAACAATGGAGACTAT
TACAACAATCAATCCTTGCCATATTTAAGGAATAAAGTTTGATTTCAAGAAAAATAAGGCAAAGA
AAAGATTTTCAAGCGAAAGAAAATCATCAATATCATTTATCATAATGAGGAGAATGTGTTTATAG
TACCCAATCACAAAAGGAATGAAAATCCTTACTAGAATCTATGTTTGTCATTTGAGGCATGAACT
TAGACTCTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCCACACCAAAGCATCAATATCTATAT
CCTAATCAGAAGACTATGTTTATCGTGCCTAATCCTAAAAAAAATGGCGATTAGAATGACGATTA
ATATTTGTCTTATTTAAAAGACAAACTTTGATTCTATAAAAAACAGTGGAAAGAAAACCTTTTCT
TATGACACCAAAGCATCAATGCCATGTATCCTAATGAAAGGAATGTTTCTTGGTTCCCAATCTTG
AAAAGAATGGAGACTATTACAAGAATAGATACTAGC
Found at i:1170411 original size:423 final size:424
Alignment explanation
Indices: 1169603--1170445 Score: 1185
Period size: 423 Copynumber: 2.0 Consensus size: 424
1169593 CTTATGACCC
*** * * * * *
1169603 CAAAGCATCAATGTCATTTGTCTTAATGAAAGGAATGTGTTTTTGGTTTCCAATCTTGAAATGAA
1 CAAAGCATCAATGTCATGCATCATAATGAAAGGAATGTGTTCTTAGTTCCCAATCTTGAAAGGAA
* * * * * *
1169668 TGGAGATTGTTACAAGAATTAGTGCTAGCCTTATTTCAAAGATGAATTTTGATTTTATGGAAAAT
66 TGGAGACTGTTACAACAATGAGTCCTAGCCATATTTCAAAGATGAATTTTGATTTTAAGGAAAAT
* *
1169733 AGGGCAAAGAAAAGATTTTCAACCAAAAGAAAAGCATCATTATCATTTATCTTAATGAGGAGAAT
131 AGGGCAAAGAAAAGATTTGCAACCAAAAGAAAAGCATCATTATCATTTATCCTAATGAGGAGAAT
1169798 GTGTTTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTC
196 GTGTTTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTC
* * * *
1169863 GAGGCACAAACTTAGACTTTGCAAAAATTGGTGTGAAGAAAGCCTTTCTTGCAAAACCAAAGTGT
261 AAGGCACAAACTTAGACTTTGCAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGTAT
* **
1169928 CAATATTGTGTATCCTTATGAGATGACTATGTTTTTGGTGCCTAACCCTAAAAAGAATGGGGATT
326 CAATATTGTGTATCCTTATGAGATGACTATGTTTATGGCACCTAACCCTAAAAAGAATGGGGATT
*
1169993 AGTATGACTCTCCATGGTTGTCTTATTTAAGAGG
391 AGTATGACTATCCATGGTTGTCTTATTTAAGAGG
* *
1170027 CAAA-CATCAATGTCATGCATCATAATGAAGGGAATGTGTTCTTAGTTCCCAATCTTGAAGGGAA
1 CAAAGCATCAATGTCATGCATCATAATGAAAGGAATGTGTTCTTAGTTCCCAATCTTGAAAGGAA
* * * *
1170091 TGGAGACTGTTACGACAATCGA-TCCTTGTCATATTT-AAGGAATGAATTTTGATTTTAAGGAAA
66 TGGAGACTGTTACAACAAT-GAGTCCTAGCCATATTTCAAAG-ATGAATTTTGATTTTAAGGAAA
* ***
1170154 ATAGGGCAATGAAAAGATTTGCTTGCAAAAG-AAAGTCATCATTATCATTTATCCTAAT-AGGGA
129 ATAGGGCAAAGAAAAGATTTGCAACCAAAAGAAAAG-CATCATTATCATTTATCCTAATGA-GGA
* *
1170217 GAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTATTAGAATCCATGTTTGTCTC
192 GAATGTGTTTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTC
* ** *
1170282 ATTTAAGGCATGAACTTAGACTTTGCAAAAATTTGTGGGAAAAAAGCCTTTCTTGCAAAACCAAA
257 ATTCAAGGCACAAACTTAGACTTTGCAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAA
* * *
1170347 GTATCAATATTGTGTATCCTTATGAGAAT-ACTATGTTTATGGCACCTAATCCTGAAATGAATGG
322 GTATCAATATTGTGTATCCTTATGAG-ATGACTATGTTTATGGCACCTAACCCTAAAAAGAATGG
* * *
1170411 GGATTAGTATGGCTATTCATGTTTGTCTTATTTAA
386 GGATTAGTATGACTATCCATGGTTGTCTTATTTAA
1170446 ATGACAAACT
Statistics
Matches: 368, Mismatches: 46, Indels: 11
0.87 0.11 0.03
Matches are distributed among these distances:
422 8 0.02
423 353 0.96
424 7 0.02
ACGTcount: A:0.34, C:0.14, G:0.19, T:0.33
Consensus pattern (424 bp):
CAAAGCATCAATGTCATGCATCATAATGAAAGGAATGTGTTCTTAGTTCCCAATCTTGAAAGGAA
TGGAGACTGTTACAACAATGAGTCCTAGCCATATTTCAAAGATGAATTTTGATTTTAAGGAAAAT
AGGGCAAAGAAAAGATTTGCAACCAAAAGAAAAGCATCATTATCATTTATCCTAATGAGGAGAAT
GTGTTTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTC
AAGGCACAAACTTAGACTTTGCAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGTAT
CAATATTGTGTATCCTTATGAGATGACTATGTTTATGGCACCTAACCCTAAAAAGAATGGGGATT
AGTATGACTATCCATGGTTGTCTTATTTAAGAGG
Found at i:1170933 original size:476 final size:476
Alignment explanation
Indices: 1170027--1172877 Score: 3328
Period size: 476 Copynumber: 6.0 Consensus size: 476
1170017 ATTTAAGAGG
* **
1170027 CAAA-CATCAATGTCATGCATCATAATGAAGGGAATGTGTTCTTAGTTCCCAATCTTGAAGGGAA
1 CAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTGTTCTTAGTTCCCAATCTTGAAAAGAA
* * * *
1170091 TGGAGACTGTTACGACAATCGATCCTTGTCATATTTAAGGAATGAATTTTGATTTTAAGGAAAAT
66 TGGAGACTGTTACGAGAATCAATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAAT
* * * * *
1170156 AGGGCAATGAAAAGATTTGCTTGCAAAAGAAAGTCATCATTATCATTTATCCTAAT-AGGGAGAA
131 AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA-GGAGAA
*
1170220 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTATTAGAATCCATGTTTGTCTCATT
195 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATT
* * * *
1170285 TAAGGCATGAACTTAGACTTTGCAAAAATTTGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGTA
260 TGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCA
* * ** *
1170350 TCAATATTGTGTATCCTTATGAGAATACTATGTTTATGGCACCTAATCCTGAAATGAATGGGGAT
325 TCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGAT
* *
1170415 TAGTATGGCTATTCATGTTTGTCTTATTTAA-ATGACAAACTTTGATTCT-TAAAAAAATGGCGG
390 TAGTATGACTATTCATGTTTGTCTTATTTAAGA-GACAAACTTTGATTCTAT-AAAAAATGGTGG
**
1170478 AAAGAAAACCTTTTCTTACAACAC
453 AAAGAAAACCTTTTCTTATGACAC
* * * *
1170502 CAAAGCATCAATGTCTTGCATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAA
1 CAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTGTTCTTAGTTCCCAATCTTGAAAAGAA
* * * * * * * *
1170567 TGGAGTCTGTCACAAGAA-CAAATGCTTGCCTTATTTCAA-GGATAAATTTTGATTTTATGAAAA
66 TGGAGACTGTTACGAGAATC-AATGCTTGTCATATTT-AAGGGATGAATTTTGATTTTAAGGAAA
* * ** * * * *
1170630 ATAGGGTAAAGAAAAAATTTGTAAGCAAAAGAAAATCATAAATATCATTTATCATAATTAGGAGA
129 ATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA
* * * * *
1170695 ATGTGTTTATAGTGCCTAATCATAAAATAAATGAAGATCCTCACTAGAATCCATGTTTGCCTCAT
194 ATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCAT
* ** *
1170760 TTGAGGCATGAACTTAGACTTTACAAAAATTGGTGAGAAAAAAGCCTTTCTAACAAAACCAAAGT
259 TTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGC
* * * *
1170825 ATCAATATCGTGTATCCTGT-TGAAAAGGCTATGTTTATGGTGCCTAA-CGCAGAAAATAATGGG
324 ATCAATATCGTGTATCCT-TATGAGAAGACTATGTTTATGGTGCCTAATC-CTGAAAAGAATGGG
* ** *
1170888 GATTAGCATGA-TGATTCATGTTTGAGTTATTTAAGAGATAAACTTTGATTCTATCAAAAAATGG
387 GATTAGTATGACT-ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT-AAAAAATGG
* *
1170952 TGGAAAGAAAACCATTTCTTATGACAA
450 TGGAAAGAAAACCTTTTCTTATGACAC
* * * **
1170979 CAAAGCATCAATGCCATGTATCCTAATGAAGGGAATGT-TTCTTGGTTCCCAATCTTGAAAAGTG
1 CAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTGTTCTTAGTTCCCAATCTTGAAAAGAA
* * * *
1171043 TGGAGACTATTGCGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTTATTTTAAGGAAAAT
66 TGGAGACTGTTACGAGAATCAATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAAT
* * * **
1171108 AGAGCAAAGAAAAGATTTCCATGCAAAA-AAAAT-ATTAATATCATTGATTTTAATGAGGAGAAT
131 AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
* * * * * *
1171171 GTGTTTATTGTGCCTAATCACAAAATCATTGAAGATCATTACTATAATCCATGTTTGTTTCGTTT
196 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT
* ** * * * *
1171236 GAGGCACGAACTTAGACTTTGTAAAAATTGGTGTGAAGAAAGCCTTTCCTGCAAAACCAAAGCGT
261 GAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCAT
*
1171301 CAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATCGGGATT
326 CAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATT
* * * * * * * * *
1171366 AGTATGAGTATTCATGGTTGTCGTATATAAGTGACAAACTTCGATTCTATCAAATATTGTGGAAA
391 AGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAATGGTGGAAA
* *
1171431 GAAAAGCTTTTCTTATGACTC
456 GAAAACCTTTTCTTATGACAC
* * * *
1171452 CAAAGCATCAATGTCATGTATCCCAAT-AGAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGA
1 CAAAGCATCAATGTCATGCATCCTAATGA-AGGGAATGTGTTCTTAGTTCCCAATCTTGAAAAGA
* * * * * **
1171516 ATGGAGAGTGTTACGGGAATCAATGCTTGCCTTATTTAAGGGATAAACCTTGATTTTAAGGAAAA
65 ATGGAGACTGTTACGAGAATCAATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAA
* * * * * *
1171581 TAGGGCAAAGAAAAGATTTTCATGCAAAAGCAAATCATCAATATCATGTATCCTAGTAAGGGGAA
130 TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
* * * * * *
1171646 TATGTTTATAATGCCTAATCAC-AATTGCATGAAGATCATTACTAGGATCCTTGTTTGTCTCATT
195 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATT
* * * * **
1171710 TGAGGTACGAACTTAGACTTTGCAAAAATTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCA
260 TGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCA
* * *
1171775 TCAATATCGTGTATCCTTATGAGAAGACTATGTTCATGGTGCCTAATCCTAAAAAGAATGGAGAT
325 TCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGAT
* * * * * * * *
1171840 TGGTGTGACTATTCATGTTTGTCTTATTCT--TAGACAAACTTTAATTCAATCAAAAACGATAGG
390 TAGTATGACTATTCATGTTTGTCTTATT-TAAGAGACAAACTTTGATTCTATAAAAAATGGT-GG
* *
1171903 -AAGAAAAGCTTTTCTTGTGACAC
453 AAAGAAAACCTTTTCTTATGACAC
* * *
1171926 CAAAGCATCAATGTCATGCATCCTAATAAAGGGAAAGT-TTCTTAGTTCCCAATCTTGAAAAGAG
1 CAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTGTTCTTAGTTCCCAATCTTGAAAAGAA
* * * *
1171990 TGGAGACTGTTACGCGAATCAATGCTTATCATATTTAAGAGATGAATTTT-ATTTTATGGAAAAT
66 TGGAGACTGTTACGAGAATCAATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAAT
* * * *
1172054 AGGACAAAGAAAAGATTTCCACGCAAAACAAAAATCATCAATATCATTTATCCTAATCAGGAGAA
131 AGGGCAAAGAAAAGATTTCCATGCAAAA-GAAAATCATCAATATCATTTATCCTAATGAGGAGAA
* *
1172119 TATG-TT-TA-T---T-ATGC-C----T-AATG-AG--------TAGATTCCATGTTTGTCTCAT
195 TGTGTTTATAGTGCCTAAT-CACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCAT
* ** * * *
1172162 TTGAGGCATTAACTTAGACTTTACAAAAATCAGTGGGAAAAAACCCTTTCTTTCAAAACCAAATC
259 TTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGC
* * * * * *
1172227 ATCAATATCATATATCATAAAGAGAAGACTATGTTTATGGTGCCTAATCCT-AAAATGAATTGGG
324 ATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAA-GAATGGGG
* *
1172291 ATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGG
388 ATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAATGGTGG
* * **
1172356 AAATAAAA-GTTTTCCTTGCGACAC
453 AAAGAAAACCTTTT-CTTATGACAC
* * * *
1172380 CAAGGCATAAATGTCATGCATCCAAATGAACGGAATGTGTTCTTAGTTCCCAATCTTGAAAAGAA
1 CAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTGTTCTTAGTTCCCAATCTTGAAAAGAA
* * * * *
1172445 TAGAGACTATTACGACAATCGATACTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAAT
66 TGGAGACTGTTACGAGAATCAATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAAT
* * * *
1172510 AGGGCCAAGAAAATATGTCCATGCAAAAGAAAATCATCAATATCATTTATCATAATGAGGAGAAT
131 AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
* *
1172575 GTGTTTATAGTACCCAATCACAAAATGAATGAAGATTC-TTACTAGAATCCATGTTTGTCTCATT
196 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGA-TCATTACTAGAATCCATGTTTGTCTCATT
* * ***
1172639 GGAGGCA-CAGACTTAGACTTTACAAAAATTGGTGGGAAAAAA-CCTTTCTTGTGCAACCAAAGC
260 TGAGGCATGA-ACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGC
* * * * *
1172702 GTCAATATCATGTATCCTAATGAGAAGACTATGTTCATGGTGCCTAATCCTGAAAAGAATGAGGA
324 ATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGA
* * * *
1172767 TTAATATGACTATTCATGTTTGTCTTATTTAAGAAACAAACTTTGGTTCTATCAAAAATGGTGGA
389 TTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAATGGTGGA
*
1172832 AAGAAAACCTTTTCTTGTGACAC
454 AAGAAAACCTTTTCTTATGACAC
* * *
1172855 CCAAGCATCAATGACATGTATCC
1 CAAAGCATCAATGTCATGCATCC
1172878 AAAGAGTGGA
Statistics
Matches: 2009, Mismatches: 312, Indels: 110
0.83 0.13 0.05
Matches are distributed among these distances:
452 5 0.00
453 156 0.08
454 73 0.04
455 103 0.05
456 38 0.02
457 2 0.00
458 1 0.00
461 3 0.00
462 6 0.00
463 1 0.00
466 4 0.00
467 6 0.00
468 2 0.00
470 1 0.00
471 2 0.00
472 41 0.02
473 162 0.08
474 408 0.20
475 361 0.18
476 562 0.28
477 72 0.04
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (476 bp):
CAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTGTTCTTAGTTCCCAATCTTGAAAAGAA
TGGAGACTGTTACGAGAATCAATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAAT
AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT
GAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCAT
CAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATT
AGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAATGGTGGAAA
GAAAACCTTTTCTTATGACAC
Found at i:1172417 original size:928 final size:924
Alignment explanation
Indices: 1170027--1173764 Score: 3826
Period size: 908 Copynumber: 4.0 Consensus size: 924
1170017 ATTTAAGAGG
* ** *
1170027 CAAA-CATCAATGTCATGCATCATAATGAAGGGAATGTGTTCTTAGTTCCCAATCTTGAAGGGAA
1 CAAAGCATCAATG-CATG-ATCCTAAT-AAGGGAA-GT-TTCTTAGTTCCCAATCTTGAAAAGAG
* * * * *
1170091 TGGAGACTGTTACGACAATCGATCCTTGTCATATTTAAGGAATGAATTTTGATTTTAAGGAAAAT
61 TGGAGACTGTTGCGAGAATCAATGCTTGTCATATTTAAGGGATGAATTTT-ATTTTAAGGAAAAT
* * * ** * * * * *
1170156 AGGGCAATGAAAAGATTTGCTTGCAAAAGAAAGTCATCATTATCATTTATCCTAATAGGGAGAAT
125 AGGACAAAGAAAAGATTTCCACGCAAAAAAAAATCATTAATATCATTTATCCTAATAAGGAGAAT
1170221 GTGTTTA-TAGTGCCTAATCACAAAATGAATGAAGATCATTATTAGAATCCATGTTTGTCTCATT
190 GTGTTTATTA-TGCC--AT------A--AATGAAG-------TTAGAATCCATGTTTGTCTCATT
* * * *
1170285 TAAGGCATGAACTTAGACTTTGCAAAAATTTGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGTA
237 TGAGGCATGAACTTAGACTTTGCAAAAATTGGTGGGAAAAAACCCTTTCTTGCAAAACCAAAGCA
** * * ** *
1170350 TCAATATTGTGTATCCTTATGAGAATACTATGTTTATGGCACCTAATCCTGAAATGAATGGGGAT
302 TCAATATCATGTATCATTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAATGAATGGGGAT
* * * *
1170415 TAGTATGGCTATTCATGTTTGTCTTATTTAA-ATGACAAACTTTGATTCT-TAAAAAAATGGCGG
367 TAGTATGACTATTCATGTTTGTCTTATTTAAGA-GACAAACTTTGATTCTAT-CAAAAACGGTGG
* * *
1170478 AAAGAAAACCTTTTCTTACAACACCAAAGCATCAATGTCTTGCATCCTAATGAAAGGAATGTGTT
430 AAAGAAAA-CTTTTCTTACGACACCAAAGCATCAATGTCATGCATCCAAATG-AAGGAATGTGTT
* *
1170543 TTTGGTTCCCAATCTTGAAAAGAATGGAGTCTGTCACAAGAA-CAAATGCTTGCCTTATTTCAA-
493 TTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACAAGAATC-AATGCTTGCCTTATTT-AAG
* * * * * ** *
1170606 GGATAAATTTTGATTTTATGAAAAATAGGGTAAAGAAAAAATTTGTAAGCAAAAGAAAATCATAA
556 GGATAAATCTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCAAGCAAAAGAAAATCATCA
* * *
1170671 ATATCATTTATCATAATTAGGAGAATGTGTTTATAGTGCCTAATCATAAAATAAATGAAGATCCT
621 ATATCATTTATCATAATTAGGAGAATGTGTTTATAGTGCCCAATCA-CAAATGAATGAAGATCCT
* * * *
1170736 CACTAGAATCCATGTTTGCCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGAGAAAA
685 TACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAA
**** * * ** * * *
1170801 AAGCCTTTCTAACAAAACCAAAGTATCAATATCGTGTATCCTGTTGAAAAGGCTATGTTTATGGT
750 AAGCCTTTCTTGTGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTCATGGT
* * * ** *
1170866 GCCTAA-CGC-AGAAAATAATGGGGATTAGCATGATGATTCATGTTTGAGTTATTTAAGAGATAA
815 GCCTAATC-CTA-AAAAGAATGGAGATTAGTATGATGATTCATGTTTGTCTTATTT-A-AGACAA
* * *
1170929 ACTTTGATTCTATCAAAAAATGGTGGAAAGAAAACCATTTCTTATGACAA
876 ACTTTGATTCTATC-AAAAATGGTGGAAAGAAAACCTTTTCTTGTGACAC
* *
1170979 CAAAGCATCAATGCCATGTATCCTAATGAAGGGAATGTTTCTTGGTTCCCAATCTTGAAAAGTGT
1 CAAAGCATCAATG-CATG-ATCCTAAT-AAGGGAA-GTTTCTTAGTTCCCAATCTTGAAAAGAGT
* *
1171044 GGAGACTATTGCGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTTATTTTAAGGAAAATA
62 GGAGACTGTTGCGAGAATCAATGCTTGTCATATTTAAGGGATGAA-TTTTATTTTAAGGAAAATA
* * ** *
1171109 -GAGCAAAGAAAAGATTTCCATGC-AAAAAAAAT-ATTAATATCATTGATTTTAATGAGGAGAAT
126 GGA-CAAAGAAAAGATTTCCACGCAAAAAAAAATCATTAATATCATTTATCCTAATAAGGAGAAT
* * * *
1171171 GTGTTTATTGTGCCTAATCACAAAATCATTGAAGATCATTACTATAATCCATGTTTGTTTCGTTT
190 GTGTTTATTATGCC--AT-----AA--A-TGAAG-----T--TAGAATCCATGTTTGTCTCATTT
* * * * * * *
1171236 GAGGCACGAACTTAGACTTTGTAAAAATTGGTGTGAAGAAAGCCTTTCCTGCAAAACCAAAGCGT
238 GAGGCATGAACTTAGACTTTGCAAAAATTGGTGGGAAAAAACCCTTTCTTGCAAAACCAAAGCAT
* * *
1171301 CAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAA-GAATCGGGAT
303 CAATATCATGTATCATTATGAGAAGACTATGTTTATGGTGCCTAATCCT-AAAATGAATGGGGAT
* * * * * * * **
1171365 TAGTATGAGTATTCATGGTTGTCGTATATAAGTGACAAACTTCGATTCTATCAAATATTGTGGAA
367 TAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAA
* * * * *
1171430 AGAAAAGCTTTTCTTATGACTCCAAAGCATCAATGTCATGTATCCCAATAGAGGGAATGTGTTTT
432 AGAAAA-CTTTTCTTACGACACCAAAGCATCAATGTCATGCATCCAAAT-GAAGGAATGTGTTTT
* **
1171495 TGGTTCCCAATCTTGAAAAGAATGGAGAGTGTTACGGGAATCAATGCTTGCCTTATTTAAGGGAT
495 TGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACAAGAATCAATGCTTGCCTTATTTAAGGGAT
* * * *
1171560 AAACCTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGCAAATCATCAATAT
560 AAATCTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCAAGCAAAAGAAAATCATCAATAT
* * * * * * * * * * *
1171625 CATGTATCCTAGTAAGGGGAATATGTTTATAATGCCTAATCACAATTGCATGAAGATCATTACTA
625 CATTTATCATAATTAGGAGAATGTGTTTATAGTGCCCAATCACAAATGAATGAAGATCCTTACTA
* * * * *
1171690 GGATCCTTGTTTGTCTCATTTGAGGTACGAACTTAGACTTTGCAAAAATTGGTGGGAAGAAAGCC
690 GAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCC
* *
1171755 TTTCTTGTGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTCATGGTGCCTA
755 TTTCTTGTGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTCATGGTGCCTA
* * * *
1171820 ATCCTAAAAAGAATGGAGATTGGTGTGACT-ATTCATGTTTGTCTTATTCTTAGACAAACTTTAA
820 ATCCTAAAAAGAATGGAGATTAGTATGA-TGATTCATGTTTGTCTTATT-TAAGACAAACTTTGA
* * * *
1171884 TTCAATCAAAAACGATAGG-AAGAAAAGCTTTTCTTGTGACAC
883 TTCTATCAAAAATGGT-GGAAAGAAAACCTTTTCTTGTGACAC
1171926 CAAAGCATCAATGTCATGCATCCTAATAAAGGGAAAGTTTCTTAGTTCCCAATCTTGAAAAGAGT
1 CAAAGCATCAATG-CATG-ATCCTAAT-AAGGG-AAGTTTCTTAGTTCCCAATCTTGAAAAGAGT
* * * * *
1171991 GGAGACTGTTACGCGAATCAATGCTTATCATATTTAAGAGATGAATTTTATTTTATGGAAAATAG
62 GGAGACTGTTGCGAGAATCAATGCTTGTCATATTTAAGGGATGAATTTTATTTTAAGGAAAATAG
* * *
1172056 GACAAAGAAAAGATTTCCACGCAAAACAAAAATCATCAATATCATTTATCCTAATCAGGAGAATA
127 GACAAAGAAAAGATTTCCACGCAAAA-AAAAATCATTAATATCATTTATCCTAATAAGGAGAATG
* *
1172121 TGTTTATTATGCC-T-AATG-AG-TAGATTCCATGTTTGTCTCATTTGAGGCATTAACTTAGACT
191 TGTTTATTATGCCATAAATGAAGTTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACT
* ** * * * *
1172182 TTACAAAAATCAGTGGGAAAAAACCCTTTCTTTCAAAACCAAATCATCAATATCATATATCATAA
256 TTGCAAAAATTGGTGGGAAAAAACCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCATTA
* *
1172247 AGAGAAGACTATGTTTATGGTGCCTAATCCTAAAATGAATTGGGATTAGTATGACTATTCATGTT
321 TGAGAAGACTATGTTTATGGTGCCTAATCCTAAAATGAATGGGGATTAGTATGACTATTCATGTT
* * *
1172312 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAATAAAAGTTTTCCTTGCGA
386 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACTTTT-CTTACGA
* * * *
1172377 CACCAAGGCATAAATGTCATGCATCCAAATGAACGGAATGTGTTCTTAGTTCCCAATCTTGAAAA
450 CACCAAAGCATCAATGTCATGCATCCAAATGAA-GGAATGTGTTTTTGGTTCCCAATCTTGAAAA
* * * * * * * * * *
1172442 GAATAGAGACTATTACGACAATCGATACTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAA
514 GAATGGAGACTGTTACAAGAATCAATGCTTGCCTTATTTAAGGGATAAATCTTGATTTTAAGGAA
* * * * *
1172507 AATAGGGCCAAGAAAATATGTCCATGCAAAAGAAAATCATCAATATCATTTATCATAATGAGGAG
579 AATAGGGCAAAGAAAAGATTTCCAAGCAAAAGAAAATCATCAATATCATTTATCATAATTAGGAG
* *
1172572 AATGTGTTTATAGTACCCAATCACAAAATGAATGAAGATTCTTACTAGAATCCATGTTTGTCTCA
644 AATGTGTTTATAGTGCCCAATCAC-AAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCA
* *
1172637 TTGGAGGCAC-AGACTTAGACTTTACAAAAATTGGTGGGAAAAAA-CCTTTCTTGTGCAACCAAA
708 TTTGAGGCACGA-ACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGTGAAACCAAA
* *
1172700 GCGTCAATATCATGTATCCTAATGAGAAGACTATGTTCATGGTGCCTAATCCTGAAAAGAAT-GA
772 GCATCAATATCATGTATCCTAATGAGAAGACTATGTTCATGGTGCCTAATCCTAAAAAGAATGGA
* *
1172764 GGATTAATATGACT-ATTCATGTTTGTCTTATTTAAGAAACAAACTTTGGTTCTATCAAAAATGG
837 -GATTAGTATGA-TGATTCATGTTTGTCTTATTTAAG--ACAAACTTTGATTCTATCAAAAATGG
1172828 TGGAAAGAAAACCTTTTCTTGTGACAC
898 TGGAAAGAAAACCTTTTCTTGTGACAC
*
1172855 CCAAGCATC-A---ATGA--C--AT-------G-----TA--T--C---C----AAAGAGTGGAG
1 CAAAGCATCAATGCATGATCCTAATAAGGGAAGTTTCTTAGTTCCCAATCTTGAAAAGAGTGGAG
* * ** *
1172889 ACTGTTGGGAGAATCAATGCTTGTCATAATTAAGGGATGTGTTTTATTTTAAGGAAAATAGGGCA
66 ACTGTTGCGAGAATCAATGCTTGTCATATTTAAGGGATGAATTTTATTTTAAGGAAAATAGGACA
* * * *
1172954 ATGAAAAGATTTCCACGCAAAAGAAAATCATTATTATCATTTATCCTAATAAAGAGAATGTGTTT
131 AAGAAAAGATTTCCACGCAAAAAAAAATCATTAATATCATTTATCCTAATAAGGAGAATGTGTTT
*
1173019 A-TAGTGCCTAATAACAAAATGAATGAATATCTTTATTAGAATCTATGTTTGTCTCATTTGAGGC
196 ATTA-TGCC--AT----AAATGAA-G----------TTAGAATCCATGTTTGTCTCATTTGAGGC
* **
1173083 ATGAACTTAGACTTTGCAAAAATTGGTGGGAAGAAAACCC-TTCTTGCGAAACCAAAGGGTC---
243 ATGAACTTAGACTTTGCAAAAATTGGTGGGAA-AAAACCCTTTCTTGCAAAACCAAAGCATCAAT
* * *
1173144 A--AT-TATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTGGTA
307 ATCATGTATCATTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAATGAATGGGGATTAGTA
* ** * * * *
1173206 AGACTATTCACATTTGTCTTATTTAAAAGGCAAA-TGTTGAATCTATCAAAAACGATGGAAAGAA
372 TGACTATTCATGTTTGTCTTATTTAAGAGACAAACT-TTGATTCTATCAAAAACGGTGGAAAG-A
* * *
1173270 AAACTTTTCTTGCGACCCCAAAGCATCAATGTCAT-CTAT-CATAATGGAAGGAAAGTGTTTTTG
435 AAACTTTTCTTACGACACCAAAGCATCAATGTCATGC-ATCCA-AAT-GAAGGAATGTGTTTTTG
* * * *
1173333 GTTCCCAATCTTGAAAAGAATGGAGATTGTTACAATAATCAATGCTTGCCTTATTTCAGGGATGA
497 GTTCCCAATCTTGAAAAGAATGGAGACTGTTACAAGAATCAATGCTTGCCTTATTTAAGGGATAA
* * * * * *
1173398 AGCTTGATTTTAAGGGAAACAAGGCAAAAAAAAGATTTCCAAGCAAAATAAAATCATCAATATCA
562 ATCTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCAAGCAAAAGAAAATCATCAATATCA
*
1173463 TTTATCATAATTAGGAGAATGTGTTCATAGTGCCCAATCACACAATGAATGAAGATCCTTACTAG
627 TTTATCATAATTAGGAGAATGTGTTTATAGTGCCCAATCACA-AATGAATGAAGATCCTTACTAG
**
1173528 AATCCATGTTTGTCTCATTTGAGGCATAAACTTAGACTTTAC-AAAATTGGTGGGAAAAAAGCCT
691 AATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCT
* * * **
1173592 TTCTTGTGATACCAAAGCATCAATATCATATATCCTAATGAGAAGACTATGTTTATCATGCCTAA
756 TTCTTGTGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTCATGGTGCCTAA
* * * * * *
1173657 TGCTGAAAATAATGGGGATTAGTATGATGATTCATATTTGTCTTATTTAAAAGACAAATTTTGAT
821 TCCTAAAAAGAATGGAGATTAGTATGATGATTCATGTTTGTCTTATTT--AAGACAAACTTTGAT
* * * * * *
1173722 TATGTAAAAAACGGTGGAAAGAAAATCTTTTCTTTTGACAC
884 TCTATCAAAAATGGTGGAAAGAAAACCTTTTCTTGTGACAC
1173763 CA
1 CA
1173765 CCTCAAGGAG
Statistics
Matches: 2368, Mismatches: 349, Indels: 182
0.82 0.12 0.06
Matches are distributed among these distances:
892 2 0.00
893 42 0.02
894 87 0.04
896 1 0.00
898 1 0.00
901 5 0.00
902 1 0.00
903 2 0.00
905 2 0.00
907 24 0.01
908 497 0.21
909 15 0.01
910 4 0.00
911 1 0.00
914 70 0.03
915 7 0.00
919 2 0.00
921 1 0.00
923 1 0.00
924 3 0.00
927 15 0.01
928 480 0.20
929 124 0.05
936 2 0.00
937 2 0.00
938 1 0.00
940 1 0.00
946 38 0.02
947 128 0.05
948 28 0.01
949 207 0.09
950 427 0.18
951 15 0.01
952 98 0.04
953 34 0.01
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.31
Consensus pattern (924 bp):
CAAAGCATCAATGCATGATCCTAATAAGGGAAGTTTCTTAGTTCCCAATCTTGAAAAGAGTGGAG
ACTGTTGCGAGAATCAATGCTTGTCATATTTAAGGGATGAATTTTATTTTAAGGAAAATAGGACA
AAGAAAAGATTTCCACGCAAAAAAAAATCATTAATATCATTTATCCTAATAAGGAGAATGTGTTT
ATTATGCCATAAATGAAGTTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTGCA
AAAATTGGTGGGAAAAAACCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCATTATGAGA
AGACTATGTTTATGGTGCCTAATCCTAAAATGAATGGGGATTAGTATGACTATTCATGTTTGTCT
TATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACTTTTCTTACGACACCAA
AGCATCAATGTCATGCATCCAAATGAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGA
GACTGTTACAAGAATCAATGCTTGCCTTATTTAAGGGATAAATCTTGATTTTAAGGAAAATAGGG
CAAAGAAAAGATTTCCAAGCAAAAGAAAATCATCAATATCATTTATCATAATTAGGAGAATGTGT
TTATAGTGCCCAATCACAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGC
ACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGTGAAACCAAAGCATCAATA
TCATGTATCCTAATGAGAAGACTATGTTCATGGTGCCTAATCCTAAAAAGAATGGAGATTAGTAT
GATGATTCATGTTTGTCTTATTTAAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAACC
TTTTCTTGTGACAC
Found at i:1183603 original size:32 final size:32
Alignment explanation
Indices: 1183566--1183665 Score: 84
Period size: 32 Copynumber: 3.2 Consensus size: 32
1183556 GTTGGTGGCA
1183566 CCTTTCAGTCCTCAAAGAGCAGGATGCCTTTT
1 CCTTTCAGTCCTCAAAGAGCAGGATGCCTTTT
* * * ** * *
1183598 CCTTTCAAAGCCCACACA-AGTTGG-TGGC---A
1 CCTTTC--AGTCCTCAAAGAGCAGGATGCCTTTT
1183627 CCTTTCAGTCCTCAAAGAGCAGGATGCCTTTT
1 CCTTTCAGTCCTCAAAGAGCAGGATGCCTTTT
1183659 CCTTTCA
1 CCTTTCA
1183666 AAGCCCACAC
Statistics
Matches: 47, Mismatches: 14, Indels: 14
0.63 0.19 0.19
Matches are distributed among these distances:
27 7 0.15
28 4 0.09
29 9 0.19
32 16 0.34
33 4 0.09
34 7 0.15
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.29
Consensus pattern (32 bp):
CCTTTCAGTCCTCAAAGAGCAGGATGCCTTTT
Found at i:1183609 original size:61 final size:61
Alignment explanation
Indices: 1183514--1184596 Score: 1229
Period size: 61 Copynumber: 18.3 Consensus size: 61
1183504 ACTTTTTAGC
*
1183514 CCTCAAAGAGCAAGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGT
1 CCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGT
*
1183575 CCTCAAAGAGCAGGATGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGT
1 CCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGT
*
1183636 CCTCAAAGAGCAGGATGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGT
1 CCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGT
1183697 CCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGT
1 CCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGT
*
1183758 CCTCAAAGAGCAGGACG------CATTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGT
1 CCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGT
1183813 CCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGT
1 CCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGT
* * *
1183874 CCTCAAAGAGCAGGACG------CCTTTCAAAGCCTACACAAGTTGGTGGCA-TTTTCCACT
1 CCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTT-CAGT
* *
1183929 CCTCAAAGAGCAGGACGCC---T--TTT-AAAGCCCACATAAGTTGGTGGCA-TTTTCCAGT
1 CCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTT-CAGT
* *
1183984 CCTCCAAGAGCAGGACGCC---T--TTT-AAAGCCCACACAAGTTGGTGGCA-TTTTCTAGT
1 CCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTC-AGT
* * * * *
1184039 CCTCCAAGAGCAGGATGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGT
1 CCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTT-CAGT
* * * *
1184100 CCTCAAAGAGCAGGATGCCTTTTCTTTTCAAAGCCCACACTAGTTGGTGGCACTTTTCAGT
1 CCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGT
* * *
1184161 CCTCAAAGAGCAGGACGCC---T--TTT-AAAGCCCACACGAGTTGGTGGCACCCTCCAGT
1 CCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGT
* * * * * * *
1184216 CCTCAAAGAGCAGGACGCCTTTTTCTTTTAAAGCCCATATAAGCTGGCGGCGCC-TTCAGT
1 CCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGT
* * * * *
1184276 CCTCAGAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACGAGTTGGTGGCACC-CTCTAGT
1 CCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTC-AGT
* * * * * * * * *
1184337 CCTCAAAGAGCATGACGCCTTTTTCTTTTAAAGCCAATATAAGCTGGCGGCGCC-TTCAGT
1 CCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGT
* * * * *
1184397 CCTCAGAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACGAGTTGGTGGCACC-CTCTAGT
1 CCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTC-AGT
* * * * * * * * *
1184458 CCTCAAAGAGCATGATGCCTTTTTCTTTTAAAGCCCATATAAGCTGGCGGCGCC-TTCAGT
1 CCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGT
* * * * * * *
1184518 CCTTAGAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAATTGGTGGC-GCTTCCCAGT
1 CCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTT-TCAGT
*
1184579 CCTCAAAGAGCAAGACGC
1 CCTCAAAGAGCAGGACGC
1184597 TCCCTCCTTT
Statistics
Matches: 904, Mismatches: 89, Indels: 58
0.86 0.08 0.06
Matches are distributed among these distances:
54 4 0.00
55 246 0.27
56 6 0.01
58 3 0.00
59 1 0.00
60 152 0.17
61 487 0.54
62 5 0.01
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.26
Consensus pattern (61 bp):
CCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGT
Found at i:1183633 original size:29 final size:29
Alignment explanation
Indices: 1183537--1183633 Score: 72
Period size: 29 Copynumber: 3.2 Consensus size: 29
1183527 GACGCCTTTT
1183537 CCTTTCAAAGCCCACACAAGTTGGTGGCA
1 CCTTTCAAAGCCCACACAAGTTGGTGGCA
* * * ** * *
1183566 CCTTTC--AGTCCTCAAAGAGCAGGATGCCTTTT
1 CCTTTCAAAGCCCACACA-AGTTGG-TGGC---A
1183598 CCTTTCAAAGCCCACACAAGTTGGTGGCA
1 CCTTTCAAAGCCCACACAAGTTGGTGGCA
1183627 CCTTTCA
1 CCTTTCA
1183634 GTCCTCAAAG
Statistics
Matches: 47, Mismatches: 14, Indels: 14
0.63 0.19 0.19
Matches are distributed among these distances:
27 7 0.15
28 4 0.09
29 16 0.34
32 9 0.19
33 4 0.09
34 7 0.15
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.26
Consensus pattern (29 bp):
CCTTTCAAAGCCCACACAAGTTGGTGGCA
Found at i:1183755 original size:29 final size:29
Alignment explanation
Indices: 1183720--1183810 Score: 84
Period size: 29 Copynumber: 3.2 Consensus size: 29
1183710 GACGCCTTTT
1183720 CCTTTCAAAGCCCACACAAGTTGGTGGCA
1 CCTTTCAAAGCCCACACAAGTTGGTGGCA
* * * **
1183749 CCTTTC--AGTCCTCA-AAG-AGCAGG-A
1 CCTTTCAAAGCCCACACAAGTTGGTGGCA
1183773 CGCATTTCAAAGCCCACACAAGTTGGTGGCA
1 C-C-TTTCAAAGCCCACACAAGTTGGTGGCA
1183804 CCTTTCA
1 CCTTTCA
1183811 GTCCTCAAAG
Statistics
Matches: 45, Mismatches: 10, Indels: 14
0.65 0.14 0.20
Matches are distributed among these distances:
24 2 0.04
25 4 0.09
26 7 0.16
27 6 0.13
28 6 0.13
29 14 0.31
30 4 0.09
31 2 0.04
ACGTcount: A:0.27, C:0.31, G:0.20, T:0.22
Consensus pattern (29 bp):
CCTTTCAAAGCCCACACAAGTTGGTGGCA
Found at i:1183834 original size:26 final size:26
Alignment explanation
Indices: 1183749--1183834 Score: 66
Period size: 26 Copynumber: 3.2 Consensus size: 26
1183739 GTTGGTGGCA
1183749 CCTTTCAGTCCTCAAAGAGCAGGACG
1 CCTTTCAGTCCTCAAAGAGCAGGACG
* * * * ** *
1183775 CATTTCAAAGCCCACACAAGTTGGTGG-CA
1 CCTTTC--AGTCCTCA-AAG-AGCAGGACG
1183804 CCTTTCAGTCCTCAAAGAGCAGGACG
1 CCTTTCAGTCCTCAAAGAGCAGGACG
1183830 CCTTT
1 CCTTT
1183835 TCCTTTCAAA
Statistics
Matches: 41, Mismatches: 14, Indels: 10
0.63 0.22 0.15
Matches are distributed among these distances:
25 3 0.07
26 14 0.34
27 6 0.15
28 6 0.15
29 9 0.22
30 3 0.07
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.22
Consensus pattern (26 bp):
CCTTTCAGTCCTCAAAGAGCAGGACG
Found at i:1184338 original size:121 final size:121
Alignment explanation
Indices: 1183514--1184596 Score: 1178
Period size: 121 Copynumber: 9.1 Consensus size: 121
1183504 ACTTTTTAGC
* * *
1183514 CCTCAAAGAGCAAGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTC
1 CCTCAAAGAGCAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACC-TTCAGTCCTC
* *
1183579 AAAGAGCAGGATGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCA-CCTTTCAGT
65 AAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCCTCT-AGT
* * *
1183636 CCTCAAAGAGCAGGATGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTC
1 CCTCAAAGAGCAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACC-TTCAGTCCTC
* * *
1183701 AAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCA-CCTTTCAGT
65 AAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCCTCT-AGT
*
1183758 CCTCAAAGAGCAGGACG-C-ATTTC----AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTC
1 CCTCAAAGAGCAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACC-TTCAGTCCTC
* * *
1183817 AAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCA-CCTTTCAGT
65 AAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCCTCT-AGT
* ** *
1183874 CCTCAAAGAGCAGGACGCC--TTTC----AAAGCCTACACAAGTTGGTGGCATTTTCCACTCCTC
1 CCTCAAAGAGCAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTT-CAGTCCTC
* * *** *
1183933 AAAGAGCAGGA---C---GCCTTTTAAAGCCCACATAAGTTGGTGGCATTTTCCAGT
65 AAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCCTCTAGT
* **
1183984 CCTCCAAGAGCAGGACG-C-----CTTTTAAAGCCCACACAAGTTGGTGGCATTTTCTAGTCCTC
1 CCTCAAAGAGCAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC-AGTCCTC
* * *** *
1184043 CAAGAGCAGGATG-CTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGT
65 AAAGAGCAGGATGCCTTTTCCTTTT-AAAGCCCACACAAGTTGGTGGCACCCTCTAGT
* * *
1184100 CCTCAAAGAGCAGGATGCC-TTTTCTTTTCAAAGCCCACACTAGTTGGTGGCACTTTTCAGTCCT
1 CCTCAAAGAGCAGGACGCCTTTTTCTTTT-AAAGCCCACACAAGTTGGTGGCAC-CTTCAGTCCT
* * *
1184164 CAAAGAGCAGGA---C---GCCTTTTAAAGCCCACACGAGTTGGTGGCACCCTCCAGT
64 CAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCCTCTAGT
* * * * *
1184216 CCTCAAAGAGCAGGACGCCTTTTTCTTTTAAAGCCCATATAAGCTGGCGGCGCCTTCAGTCCTCA
1 CCTCAAAGAGCAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCA
* *
1184281 GAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACGAGTTGGTGGCACCCTCTAGT
66 AAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCCTCTAGT
* * * * * * *
1184337 CCTCAAAGAGCATGACGCCTTTTTCTTTTAAAGCCAATATAAGCTGGCGGCGCCTTCAGTCCTCA
1 CCTCAAAGAGCAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCA
* *
1184402 GAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACGAGTTGGTGGCACCCTCTAGT
66 AAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCCTCTAGT
* * * * * * * *
1184458 CCTCAAAGAGCATGATGCCTTTTTCTTTTAAAGCCCATATAAGCTGGCGGCGCCTTCAGTCCTTA
1 CCTCAAAGAGCAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCA
* * *
1184523 GAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAATTGGTGGCGCTTCC-C-AGT
66 AAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCAC--CCTCTAGT
*
1184579 CCTCAAAGAGCAAGACGC
1 CCTCAAAGAGCAGGACGC
1184597 TCCCTCCTTT
Statistics
Matches: 875, Mismatches: 56, Indels: 61
0.88 0.06 0.06
Matches are distributed among these distances:
106 1 0.00
109 2 0.00
110 88 0.10
111 1 0.00
112 1 0.00
113 1 0.00
115 27 0.03
116 264 0.30
117 16 0.02
118 1 0.00
120 4 0.00
121 288 0.33
122 175 0.20
123 6 0.01
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.26
Consensus pattern (121 bp):
CCTCAAAGAGCAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCA
AAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCCTCTAGT
Found at i:1184699 original size:55 final size:56
Alignment explanation
Indices: 1184615--1184977 Score: 439
Period size: 55 Copynumber: 6.4 Consensus size: 56
1184605 TTCACCCTTT
* * *
1184615 AGTCCTCAAAGAGCAGGACGCCT-TTTAAAGCCCACACAAGTTGGTGGCACTTCCC
1 AGTCCTCAAAGAGCAGGATGCCTCTTCAAAGCCCACACAAGTTGGTGGCACTTTCC
* *
1184670 AGTCCTCAAAGAGCAGGATGCCTCTT-AAAGCCCACATAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGATGCCTCTTCAAAGCCCACACAAGTTGGTGGCACTTTCC
*
1184725 AGTCCTCAAAGAGCAGGACGCCT-TTCAAAGCCCACACAAGTTGGTGGCACTTTCC
1 AGTCCTCAAAGAGCAGGATGCCTCTTCAAAGCCCACACAAGTTGGTGGCACTTTCC
* * *
1184780 AGTCCTCAAAGAGTAGGACGCCTCTT-AAAGCCCACACAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGATGCCTCTTCAAAGCCCACACAAGTTGGTGGCACTTTCC
* * *
1184835 AGTCCTCAAAGAGCAGGATTCTTTCTCTTTGCAAAGCCCACACAAGTTAGTGGCACCTTCC
1 AGTCCTCAAAGAGCAGGATGC---CTC-TT-CAAAGCCCACACAAGTTGGTGGCACTTTCC
* * * * *
1184896 AGTCCTCAAAGAACAGGACACCTTTCCTTTTCAAAGCCCACACGAGTTGGTGGCACATTT-T
1 AGTCCTCAAAGAGCAGG--A---TGCCTCTTCAAAGCCCACACAAGTTGGTGGCAC-TTTCC
1184957 AGTCCTCAAAGAGCAGGATGC
1 AGTCCTCAAAGAGCAGGATGC
1184978 ACTTTATTTT
Statistics
Matches: 270, Mismatches: 23, Indels: 29
0.84 0.07 0.09
Matches are distributed among these distances:
54 2 0.01
55 165 0.61
56 6 0.02
58 3 0.01
59 3 0.01
61 81 0.30
62 4 0.01
63 3 0.01
66 3 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (56 bp):
AGTCCTCAAAGAGCAGGATGCCTCTTCAAAGCCCACACAAGTTGGTGGCACTTTCC
Found at i:1185163 original size:40 final size:42
Alignment explanation
Indices: 1185067--1185164 Score: 103
Period size: 42 Copynumber: 2.4 Consensus size: 42
1185057 GATGTACTCT
* *
1185067 TTTTCACTTTGTCCTCAAGAAGCAGGACACTTTCCTTTTCTTC
1 TTTTC-CTTTGTCCTCAAGAAGCAAGACACTTTCCTATTCTTC
* * * *
1185110 TCTTCCTTGGTCCTCAAGGAGCAAGAC-CTATTTC-ATTC-TC
1 TTTTCCTTTGTCCTCAAGAAGCAAGACACT-TTCCTATTCTTC
1185150 TTTTCCTTTGTCCTC
1 TTTTCCTTTGTCCTC
1185165 GAAAAGTGGA
Statistics
Matches: 46, Mismatches: 8, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
40 15 0.33
41 5 0.11
42 22 0.48
43 4 0.09
ACGTcount: A:0.16, C:0.30, G:0.12, T:0.42
Consensus pattern (42 bp):
TTTTCCTTTGTCCTCAAGAAGCAAGACACTTTCCTATTCTTC
Found at i:1185861 original size:13 final size:13
Alignment explanation
Indices: 1185823--1185861 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
1185813 ACATAAATGT
*
1185823 TGTATCGATACAT
1 TGTATCGATACAA
1185836 TGTATCGATACAA
1 TGTATCGATACAA
*
1185849 TGTATCGCTACAA
1 TGTATCGATACAA
1185862 AGCTACTGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1188307 original size:51 final size:51
Alignment explanation
Indices: 1188251--1188436 Score: 205
Period size: 51 Copynumber: 3.6 Consensus size: 51
1188241 TTAAGTTTCT
** * *
1188251 CAATTTTTCATTATCGGGGGTACTCTAACCCCGGTTTTA-TTTCTAAAACAC
1 CAATTTTTCACAATCGGGGATACTCCAACCCCGGTTTTATTTTC-AAAACAC
* ** * * * *
1188302 TAATTTTTCACAATCGGGGATACAACAACTCTGATTTTATTTTCGAAACAC
1 CAATTTTTCACAATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAACAC
* *
1188353 CAATTTTCCACAACCGGGGATACTCCAACCCCGGTTTTATTTTCAAAACAC
1 CAATTTTTCACAATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAACAC
* *
1188404 CAA-TTTTCTATAATCAGGGATACTCCAACCCCG
1 CAATTTTTC-ACAATCGGGGATACTCCAACCCCG
1188437 TTAATCATCG
Statistics
Matches: 109, Mismatches: 24, Indels: 4
0.80 0.18 0.03
Matches are distributed among these distances:
50 4 0.04
51 101 0.93
52 4 0.04
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.32
Consensus pattern (51 bp):
CAATTTTTCACAATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAACAC
Found at i:1188488 original size:28 final size:27
Alignment explanation
Indices: 1188419--1188489 Score: 83
Period size: 27 Copynumber: 2.6 Consensus size: 27
1188409 TTCTATAATC
1188419 AGGGATACTCCAACCCCGTTAATCATCG
1 AGGGATACTCCAACCCCGTTAATCA-CG
* *
1188447 -GGGATACTCAAACCCCGTTATTTC-CG
1 AGGGATACTCCAACCCCGTTA-ATCACG
1188473 AAGGGATACTCCAACCC
1 -AGGGATACTCCAACCC
1188490 TGGCTTTATT
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
26 2 0.05
27 19 0.51
28 16 0.43
ACGTcount: A:0.28, C:0.32, G:0.18, T:0.21
Consensus pattern (27 bp):
AGGGATACTCCAACCCCGTTAATCACG
Found at i:1188540 original size:79 final size:79
Alignment explanation
Indices: 1188443--1188648 Score: 304
Period size: 79 Copynumber: 2.6 Consensus size: 79
1188433 CCCGTTAATC
* * * *
1188443 ATCGGGGATACTCAAACCCCGTTATTTCCGAAGGGATACTCCAACCCTGGCTTTATTCCTAAATT
1 ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGCTTTATTCCTAAAAT
*
1188508 ATTGATTTCTCATA
66 ATTGATTTCTCACA
* *
1188522 ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCTAACCCCGGTTTTATTCCTAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGCTTTATTCCTAAAAT
1188587 ATTGATTTCTCACA
66 ATTGATTTCTCACA
* * * * *
1188601 ATTGGAGATACTCCAACCCCGTTATTTTCGTGGGGATACTCCGACCCC
1 ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCC
1188649 ATTATTTTTG
Statistics
Matches: 114, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
79 114 1.00
ACGTcount: A:0.25, C:0.27, G:0.17, T:0.31
Consensus pattern (79 bp):
ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGCTTTATTCCTAAAAT
ATTGATTTCTCACA
Found at i:1188647 original size:28 final size:28
Alignment explanation
Indices: 1188607--1188668 Score: 88
Period size: 28 Copynumber: 2.2 Consensus size: 28
1188597 CACAATTGGA
* *
1188607 GATACTCCAACCCCGTTATTTTCGTGGG
1 GATACTCCAACCCCATTATTTTCGAGGG
* *
1188635 GATACTCCGACCCCATTATTTTTGAGGG
1 GATACTCCAACCCCATTATTTTCGAGGG
1188663 GATACT
1 GATACT
1188669 TCAAGCCTGA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (28 bp):
GATACTCCAACCCCATTATTTTCGAGGG
Found at i:1193216 original size:52 final size:52
Alignment explanation
Indices: 1193137--1193329 Score: 323
Period size: 52 Copynumber: 3.7 Consensus size: 52
1193127 ATCGATACAT
* * * *
1193137 ATACATCTGGGCAAATTTACCTGCATGTATTGATAAATTTTATAATGTATCG
1 ATACATCTGGGCAAATTTGCCTACATGTATCGATACATTTTATAATGTATCG
* *
1193189 ATACATCTGGGCAAATTTGCCTACATGTATCGATACATTTAATAGTGTATCG
1 ATACATCTGGGCAAATTTGCCTACATGTATCGATACATTTTATAATGTATCG
*
1193241 ATACATCTGGGCAAATTTGCCTGCATGTATCGATACATTTTATAATGTATCG
1 ATACATCTGGGCAAATTTGCCTACATGTATCGATACATTTTATAATGTATCG
1193293 ATACATCTGGGCAAATTTGCCTACATGTATCGATACA
1 ATACATCTGGGCAAATTTGCCTACATGTATCGATACA
1193330 AAGATCAGTG
Statistics
Matches: 131, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
52 131 1.00
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.35
Consensus pattern (52 bp):
ATACATCTGGGCAAATTTGCCTACATGTATCGATACATTTTATAATGTATCG
Found at i:1193317 original size:104 final size:104
Alignment explanation
Indices: 1193137--1193350 Score: 360
Period size: 104 Copynumber: 2.1 Consensus size: 104
1193127 ATCGATACAT
*
1193137 ATACATCTGGGCAAATTTACCTGCATGTATTGATAAATTTTATAATGTATCGATACATCTGGGCA
1 ATACATCTGGGCAAATTTACCTGCATGTATCGATAAATTTTATAATGTATCGATACATCTGGGCA
*
1193202 AATTTGCCTACATGTATCGATACATTTA-AT-AGTGTATCG
66 AATTTGCCTACATGTATCGATACA--AAGATCAGTGTATCG
* *
1193241 ATACATCTGGGCAAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCA
1 ATACATCTGGGCAAATTTACCTGCATGTATCGATAAATTTTATAATGTATCGATACATCTGGGCA
1193306 AATTTGCCTACATGTATCGATACAAAGATCAGTGTATCG
66 AATTTGCCTACATGTATCGATACAAAGATCAGTGTATCG
1193345 ATACAT
1 ATACAT
1193351 GTATCGATAC
Statistics
Matches: 104, Mismatches: 4, Indels: 4
0.93 0.04 0.04
Matches are distributed among these distances:
102 1 0.01
103 2 0.02
104 101 0.97
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.35
Consensus pattern (104 bp):
ATACATCTGGGCAAATTTACCTGCATGTATCGATAAATTTTATAATGTATCGATACATCTGGGCA
AATTTGCCTACATGTATCGATACAAAGATCAGTGTATCG
Found at i:1193355 original size:12 final size:12
Alignment explanation
Indices: 1193338--1193362 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
1193328 CAAAGATCAG
1193338 TGTATCGATACA
1 TGTATCGATACA
1193350 TGTATCGATACA
1 TGTATCGATACA
1193362 T
1 T
1193363 TGAGTAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (12 bp):
TGTATCGATACA
Found at i:1193374 original size:32 final size:32
Alignment explanation
Indices: 1193314--1193382 Score: 95
Period size: 32 Copynumber: 2.2 Consensus size: 32
1193304 CAAATTTGCC
*
1193314 TACATGTATCGATACAAAGATCAGTGTATCGA
1 TACATGTATCGATACAAAGATCAATGTATCGA
**
1193346 TACATGTATCGATACATTGAGT-AATGTATCGA
1 TACATGTATCGATACAAAGA-TCAATGTATCGA
1193378 TACAT
1 TACAT
1193383 TTTTTGGCAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
32 32 0.97
33 1 0.03
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.32
Consensus pattern (32 bp):
TACATGTATCGATACAAAGATCAATGTATCGA
Found at i:1193442 original size:13 final size:13
Alignment explanation
Indices: 1193424--1193478 Score: 56
Period size: 13 Copynumber: 3.8 Consensus size: 13
1193414 AAAACTTATA
1193424 TATCGATACATTG
1 TATCGATACATTG
1193437 TATCGATACAACACTTATG
1 TATCGAT---ACA--T-TG
1193456 TATCGATACATTG
1 TATCGATACATTG
1193469 TATCGATACA
1 TATCGATACA
1193479 ACACTTTATG
Statistics
Matches: 36, Mismatches: 0, Indels: 12
0.75 0.00 0.25
Matches are distributed among these distances:
13 19 0.53
14 1 0.03
16 6 0.17
18 1 0.03
19 9 0.25
ACGTcount: A:0.35, C:0.18, G:0.13, T:0.35
Consensus pattern (13 bp):
TATCGATACATTG
Found at i:1193442 original size:32 final size:32
Alignment explanation
Indices: 1193401--1193484 Score: 150
Period size: 32 Copynumber: 2.6 Consensus size: 32
1193391 AATAGCTTAA
*
1193401 ATTGTATCGATACAAAACTTATATATCGATAC
1 ATTGTATCGATACAACACTTATATATCGATAC
*
1193433 ATTGTATCGATACAACACTTATGTATCGATAC
1 ATTGTATCGATACAACACTTATATATCGATAC
1193465 ATTGTATCGATACAACACTT
1 ATTGTATCGATACAACACTT
1193485 TATGTATCAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
32 50 1.00
ACGTcount: A:0.37, C:0.18, G:0.11, T:0.35
Consensus pattern (32 bp):
ATTGTATCGATACAACACTTATATATCGATAC
Found at i:1193459 original size:19 final size:19
Alignment explanation
Indices: 1193403--1193492 Score: 69
Period size: 19 Copynumber: 5.3 Consensus size: 19
1193393 TAGCTTAAAT
*
1193403 TGTATCGATACAAAACTTA
1 TGTATCGATACAACACTTA
*
1193422 TATATCGAT---ACA--T-
1 TGTATCGATACAACACTTA
1193435 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
1193454 TGTATCGAT---ACA--T-
1 TGTATCGATACAACACTTA
1193467 TGTATCGATACAACACTTTA
1 TGTATCGATACAACAC-TTA
1193487 TGTATC
1 TGTATC
1193493 AATATAAATC
Statistics
Matches: 55, Mismatches: 3, Indels: 25
0.66 0.04 0.30
Matches are distributed among these distances:
13 17 0.31
14 2 0.04
16 11 0.20
18 1 0.02
19 18 0.33
20 6 0.11
ACGTcount: A:0.36, C:0.18, G:0.11, T:0.36
Consensus pattern (19 bp):
TGTATCGATACAACACTTA
Found at i:1195280 original size:21 final size:21
Alignment explanation
Indices: 1195256--1195308 Score: 97
Period size: 21 Copynumber: 2.5 Consensus size: 21
1195246 GACATGCTGT
*
1195256 AAATGCATGAAACATAGCTCA
1 AAATACATGAAACATAGCTCA
1195277 AAATACATGAAACATAGCTCA
1 AAATACATGAAACATAGCTCA
1195298 AAATACATGAA
1 AAATACATGAA
1195309 TCATGGGCTG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.53, C:0.17, G:0.11, T:0.19
Consensus pattern (21 bp):
AAATACATGAAACATAGCTCA
Found at i:1196248 original size:13 final size:13
Alignment explanation
Indices: 1196230--1196257 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
1196220 ATACAAAGAT
1196230 CAATGTATCGATA
1 CAATGTATCGATA
1196243 CAATGTATCGATA
1 CAATGTATCGATA
1196256 CA
1 CA
1196258 TTGAATAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:1196254 original size:33 final size:33
Alignment explanation
Indices: 1196212--1196277 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
1196202 AAATTCCCAG
1196212 ATGTATCGATACAAAG-ATCAATGTATCGATACA
1 ATGTATCGATACAAAGAAT-AATGTATCGATACA
**
1196245 ATGTATCGATACATTGAATAATGTATCGATACA
1 ATGTATCGATACAAAGAATAATGTATCGATACA
1196278 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 28 0.93
34 2 0.07
ACGTcount: A:0.41, C:0.14, G:0.15, T:0.30
Consensus pattern (33 bp):
ATGTATCGATACAAAGAATAATGTATCGATACA
Found at i:1196320 original size:19 final size:19
Alignment explanation
Indices: 1196296--1196358 Score: 75
Period size: 19 Copynumber: 3.6 Consensus size: 19
1196286 GCAGTAGCTT
1196296 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
1196315 TGTATCGAT--AA-A--T-
1 TGTATCGATACAACACTTA
*
1196328 TGTATCAATACAACACTTA
1 TGTATCGATACAACACTTA
1196347 TGTATCGATACA
1 TGTATCGATACA
1196359 TTTACTGTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 12
0.72 0.04 0.24
Matches are distributed among these distances:
13 8 0.22
14 1 0.03
15 2 0.06
16 2 0.06
17 2 0.06
18 1 0.03
19 20 0.56
ACGTcount: A:0.38, C:0.17, G:0.11, T:0.33
Consensus pattern (19 bp):
TGTATCGATACAACACTTA
Found at i:1196339 original size:32 final size:32
Alignment explanation
Indices: 1196295--1196356 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
1196285 GGCAGTAGCT
*
1196295 TTGTATCGATACAACACTTATGTATCGATAAA
1 TTGTATCAATACAACACTTATGTATCGATAAA
1196327 TTGTATCAATACAACACTTATGTATCGATA
1 TTGTATCAATACAACACTTATGTATCGATA
1196357 CATTTACTGT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.37, C:0.16, G:0.11, T:0.35
Consensus pattern (32 bp):
TTGTATCAATACAACACTTATGTATCGATAAA
Found at i:1197466 original size:13 final size:13
Alignment explanation
Indices: 1197448--1197473 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1197438 TACAGCAAGT
1197448 ATGTATCGATACA
1 ATGTATCGATACA
1197461 ATGTATCGATACA
1 ATGTATCGATACA
1197474 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1198780 original size:13 final size:13
Alignment explanation
Indices: 1198762--1198787 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1198752 CAATTTTTTG
1198762 TGTATCGATACAT
1 TGTATCGATACAT
1198775 TGTATCGATACAT
1 TGTATCGATACAT
1198788 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1199461 original size:38 final size:40
Alignment explanation
Indices: 1199395--1199479 Score: 95
Period size: 38 Copynumber: 2.2 Consensus size: 40
1199385 TTTTATTTCT
**
1199395 CCCTTAATCAAAATAAATTTAACAAATTTGTACATTCTCC
1 CCCTTAATCAAAATAAATTTAACAAATTTACACATTCTCC
* *
1199435 CCCTTAAT-AAAAT-AATTGTAGC-AATTTACGCATTCTCC
1 CCCTTAATCAAAATAAATT-TAACAAATTTACACATTCTCC
*
1199473 CCTTTAA
1 CCCTTAA
1199480 CTCCCCCGTT
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
38 23 0.59
39 8 0.21
40 8 0.21
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.35
Consensus pattern (40 bp):
CCCTTAATCAAAATAAATTTAACAAATTTACACATTCTCC
Found at i:1201346 original size:13 final size:13
Alignment explanation
Indices: 1201328--1201366 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
1201318 ATAATCACCC
*
1201328 TGTATCGATACAT
1 TGTATCGATACAA
1201341 TGTATCGATACAA
1 TGTATCGATACAA
1201354 TGTATCGATACAA
1 TGTATCGATACAA
1201367 AGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1201423 original size:20 final size:20
Alignment explanation
Indices: 1201352--1201431 Score: 79
Period size: 20 Copynumber: 3.8 Consensus size: 20
1201342 GTATCGATAC
*
1201352 AATGTATCGATACAAAGAAA
1 AATGTATCGATACATAGAAA
*
1201372 AATGTATCGATACATTGAATTTCCA
1 AATGTATCGATACATAGAA-----A
*
1201397 GATGTATCGATACATAGAAA
1 AATGTATCGATACATAGAAA
*
1201417 CATGTATCGATACAT
1 AATGTATCGATACAT
1201432 TTTGGACATT
Statistics
Matches: 50, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
20 32 0.64
25 18 0.36
ACGTcount: A:0.42, C:0.14, G:0.15, T:0.29
Consensus pattern (20 bp):
AATGTATCGATACATAGAAA
Found at i:1203463 original size:15 final size:15
Alignment explanation
Indices: 1203443--1203473 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
1203433 ATTTCGTTTG
*
1203443 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
1203458 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
1203473 G
1 G
1203474 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Done.