Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold400
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2847997
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
File 13 of 17
Found at i:1941494 original size:41 final size:41
Alignment explanation
Indices: 1941443--1941534 Score: 166
Period size: 41 Copynumber: 2.2 Consensus size: 41
1941433 AATTCAAAGA
*
1941443 ATCGATACATGTTGCAATGTATCGATACATGAAAAAGATGT
1 ATCGATACATGTTGCAATGTATCGATACATAAAAAAGATGT
*
1941484 ATCGATACATGTTGCAATGTATCGATACATAAAAAAGTTGT
1 ATCGATACATGTTGCAATGTATCGATACATAAAAAAGATGT
1941525 ATCGATACAT
1 ATCGATACAT
1941535 TTCTTGGCAG
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 49 1.00
ACGTcount: A:0.39, C:0.13, G:0.17, T:0.30
Consensus pattern (41 bp):
ATCGATACATGTTGCAATGTATCGATACATAAAAAAGATGT
Found at i:1941591 original size:13 final size:13
Alignment explanation
Indices: 1941573--1941598 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1941563 TACAGCAAGT
1941573 ATGTATCGATACA
1 ATGTATCGATACA
1941586 ATGTATCGATACA
1 ATGTATCGATACA
1941599 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1942741 original size:21 final size:21
Alignment explanation
Indices: 1942717--1942763 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
1942707 TTTGATGCTG
1942717 ATTTTG-A-TGAAAAACGAAGT
1 ATTTTGAAGTGAAAAAC-AAGT
1942737 -TATTTGAAGTGAAAAACAAGT
1 AT-TTTGAAGTGAAAAACAAGT
1942758 ATTTTG
1 ATTTTG
1942764 CAAAAGATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
19 1 0.04
20 4 0.17
21 9 0.39
22 9 0.39
ACGTcount: A:0.43, C:0.04, G:0.19, T:0.34
Consensus pattern (21 bp):
ATTTTGAAGTGAAAAACAAGT
Found at i:1942902 original size:13 final size:13
Alignment explanation
Indices: 1942884--1942908 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1942874 ATAATCACCC
1942884 TGTATCGATACAG
1 TGTATCGATACAG
1942897 TGTATCGATACA
1 TGTATCGATACA
1942909 AAGAAAAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:1942922 original size:20 final size:20
Alignment explanation
Indices: 1942897--1942973 Score: 73
Period size: 20 Copynumber: 3.6 Consensus size: 20
1942887 ATCGATACAG
1942897 TGTATCGATACAAAGAAAAA
1 TGTATCGATACAAAGAAAAA
* *
1942917 TGTATCGATACATAGAATTTCCAGA
1 TGTATCGATACAAAGAA-----AAA
* *
1942942 TGTATCGATACACAGAAACA
1 TGTATCGATACAAAGAAAAA
1942962 TGTATCGATACA
1 TGTATCGATACA
1942974 TTTTGGACAT
Statistics
Matches: 48, Mismatches: 4, Indels: 10
0.77 0.06 0.16
Matches are distributed among these distances:
20 30 0.62
25 18 0.38
ACGTcount: A:0.43, C:0.16, G:0.16, T:0.26
Consensus pattern (20 bp):
TGTATCGATACAAAGAAAAA
Found at i:1945008 original size:15 final size:15
Alignment explanation
Indices: 1944988--1945018 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
1944978 ATTTCGTTTG
*
1944988 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
1945003 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
1945018 G
1 G
1945019 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:1946851 original size:21 final size:21
Alignment explanation
Indices: 1946822--1946866 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
1946812 AAGTTTTCAT
*
1946822 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
1946842 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
1946864 TTT
1 TTT
1946867 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:1949102 original size:13 final size:13
Alignment explanation
Indices: 1949084--1949109 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1949074 CAATTTTTTG
1949084 TGTATCGATACAT
1 TGTATCGATACAT
1949097 TGTATCGATACAT
1 TGTATCGATACAT
1949110 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1950897 original size:51 final size:51
Alignment explanation
Indices: 1950842--1950938 Score: 167
Period size: 51 Copynumber: 1.9 Consensus size: 51
1950832 ATACATTTTG
1950842 TTTTTCACCTAGATGTATCGATACATTTTTCAATGTATCGATACATTCTAT
1 TTTTTCACCTAGATGTATCGATACATTTTTCAATGTATCGATACATTCTAT
* * *
1950893 TTTTTTACCTAGATGTATCGATACATTTTTTAATTTATCGATACAT
1 TTTTTCACCTAGATGTATCGATACATTTTTCAATGTATCGATACAT
1950939 CTAGTTAATT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
51 43 1.00
ACGTcount: A:0.28, C:0.15, G:0.09, T:0.47
Consensus pattern (51 bp):
TTTTTCACCTAGATGTATCGATACATTTTTCAATGTATCGATACATTCTAT
Found at i:1950920 original size:26 final size:26
Alignment explanation
Indices: 1950842--1950923 Score: 68
Period size: 20 Copynumber: 3.2 Consensus size: 26
1950832 ATACATTTTG
*
1950842 TTTTTCACCTAGATGTATCGATACA-
1 TTTTTTACCTAGATGTATCGATACAT
1950867 -TTTTT--C-A-ATGTATCGATACATTCTAT
1 TTTTTTACCTAGATGTATCGAT--A--C-AT
1950893 TTTTTTACCTAGATGTATCGATACAT
1 TTTTTTACCTAGATGTATCGATACAT
1950919 TTTTT
1 TTTTT
1950924 AATTTATCGA
Statistics
Matches: 45, Mismatches: 1, Indels: 21
0.67 0.01 0.31
Matches are distributed among these distances:
20 10 0.22
21 1 0.02
22 2 0.04
24 5 0.11
25 1 0.02
26 7 0.16
27 6 0.13
29 2 0.04
30 1 0.02
31 10 0.22
ACGTcount: A:0.26, C:0.16, G:0.10, T:0.49
Consensus pattern (26 bp):
TTTTTTACCTAGATGTATCGATACAT
Found at i:1950948 original size:21 final size:20
Alignment explanation
Indices: 1950908--1950949 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
1950898 TACCTAGATG
**
1950908 TATCGATACATTTTTTAATT
1 TATCGATACATTAGTTAATT
1950928 TATCGATACATCTAGTTAATT
1 TATCGATACAT-TAGTTAATT
1950949 T
1 T
1950950 TGAGCATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.31, C:0.12, G:0.07, T:0.50
Consensus pattern (20 bp):
TATCGATACATTAGTTAATT
Found at i:1951611 original size:13 final size:13
Alignment explanation
Indices: 1951593--1951618 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1951583 TACAGCAAGT
1951593 ATGTATCGATACA
1 ATGTATCGATACA
1951606 ATGTATCGATACA
1 ATGTATCGATACA
1951619 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1953868 original size:21 final size:21
Alignment explanation
Indices: 1953835--1953879 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
1953825 TTGCAAGTTG
*
1953835 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
1953857 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
1953877 AAA
1 AAA
1953880 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:1955703 original size:15 final size:15
Alignment explanation
Indices: 1955683--1955721 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
1955673 TAAAAATGTC
*
1955683 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
1955698 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
*
1955713 CCAAATGAA
1 CAAAATGAA
1955722 ATTGATGAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.51, C:0.15, G:0.21, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:1957805 original size:20 final size:20
Alignment explanation
Indices: 1957726--1957805 Score: 79
Period size: 20 Copynumber: 3.8 Consensus size: 20
1957716 AATGTCCAAA
*
1957726 ATGTATCGATACATGTTTCT
1 ATGTATCGATACATTTTTCT
* *
1957746 GTGTATCGATACATCTGGAAATTCT
1 ATGTATCGATACAT-T----TTTCT
1957771 ATGTATCGATACATTTTTCT
1 ATGTATCGATACATTTTTCT
*
1957791 TTGTATCGATACATT
1 ATGTATCGATACATT
1957806 GTATCGATAC
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
20 31 0.63
24 1 0.02
25 17 0.35
ACGTcount: A:0.26, C:0.15, G:0.15, T:0.44
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCT
Found at i:1957809 original size:13 final size:13
Alignment explanation
Indices: 1957791--1957829 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
1957781 ACATTTTTCT
1957791 TTGTATCGATACA
1 TTGTATCGATACA
1957804 TTGTATCGATACA
1 TTGTATCGATACA
*
1957817 CTGTATCGATACA
1 TTGTATCGATACA
1957830 GGGTGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:1957993 original size:20 final size:20
Alignment explanation
Indices: 1957950--1957995 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
1957940 AAATCTTTTG
1957950 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
1957971 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
1957991 CAAAA
1 CAAAA
1957996 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:1960389 original size:13 final size:13
Alignment explanation
Indices: 1960371--1960396 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1960361 TACAGCAAGT
1960371 ATGTATCGATACA
1 ATGTATCGATACA
1960384 ATGTATCGATACA
1 ATGTATCGATACA
1960397 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1965578 original size:476 final size:476
Alignment explanation
Indices: 1964005--1967621 Score: 4251
Period size: 476 Copynumber: 7.6 Consensus size: 476
1963995 CGTCAGGACA
* * * * *
1964005 AAGGGAATGTTTTTTGACTTCCCAATCTTAAAAAGAATGGAGACTGTTACGAGAATTGATGCGTG
1 AAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTG
* * * * * ***
1964070 TCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAGGGCAAAGGAAAGATTTCTATTTTAAA
66 TCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAA
* * *
1964135 GAAAATCGTCAATATCATTTATCTTAATGAGGAGAATGTGTTTATAGCGCCTAATCACAAAATGA
131 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
* *
1964200 ATGAAGATCATTACTAGAATCCATGTTTCTCTCATTTGAGGCATGAACTTAGACTTTACAAAAAT
196 ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAT
* *
1964265 TGGTGGGAAAAAAGCCTTTCTTGTGAAACTAAAGCATCAATATGATGTATCCTAATGAGAAGACT
261 TGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACT
* * * *
1964330 ATGTTTATGGTCCCTAATCCTAAAAAGAATGGAGATT-GTATGAGTA-TCTATGTTTGTCGAATT
326 ATGTTTATGGTGCCTAATCTTGAAAAGAATGG-GATTAGTATGACTATTC-ATGTTTGTCGAATT
* * * * * *
1964393 CAAGAGACAAATTTTGATTCTAACAAAAACT-GTGAAAAGAAAAGCTTTTCTTAC-GACACCAAA
389 TAAGAGAAAAACTTTGATTCTATCAAAAA-TGGTGGAAAGAAAAGCTTTTCTTGCTGACACCAAA
* *
1964456 GCATCAATGTCATGTACCCTAATTA
453 GCATCAATGTCATGTATCCT-ATTG
* * * * *
1964481 AAGGGAATGTGTTTTGGCATCCCAATCTTAAAAAGAATGGAGACTGTTATGAGAATAGATACTTG
1 AAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTG
* * * * * ** *
1964546 TCTTTTTTATTA-GATGAATTTTCATTTTAAGAAAAATAAGGCGGAGGAAAGATTTCCATGCAAA
66 TCTTATTTA-AAGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAA
* * * *
1964610 AGAAAATCATCAATATCATTTATCCTAAAGAGGAGAACGTGTTTATAGTGCGTAATCACAAAATA
130 AGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG
* * * * * ** * * * **
1964675 AATGAAGATCCTTACTAAAATCCAAGTTTATCTCATTTGGGGCACGTGCTAACACTTAATGAAAA
195 AATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAA
* **
1964740 TTGG-GGAGAAGAAAGCCTTTCTTGC-AAAAAAAATGCATCAATATGATGTATCCTAATGAGAAG
260 TTGGTGG-GAAAAAAGCCTTTCTTGCGAAACCAAA-GCATCAATATGATGTATCCTAATGAGAAG
* **
1964803 ACTATGTTTATGGTGCCTAATCTTCAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTA
323 ACTATGTTTATGGTGCCTAATCTTGAAAAGAAT-GGGATTAGTATGACTATTCATGTTTGTCGAA
* * * * * *
1964868 TTTAAGAGACAAACTTTGACTCTATAAAAAATGGTGGAAAAAAAAAAGCTTTTATTAG--GACTC
387 TTTAAGAGAAAAACTTTGATTCTATCAAAAATGGTGG--AAAGAAAAGCTTTTCTT-GCTGACAC
* * * * *
1964931 CAAGGCATCAATATCATATATCTTAAT-
449 CAAAGCATCAATGTCATGTATCCTATTG
* * * * *
1964958 AACGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAAACTATTACAAGAATTGATACTT
1 AA-GGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTT
* * * * *
1965023 GTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGTAATGAAAAGATTTTCATGCAAA
65 GTCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAA
* * * *
1965088 AGAAAATTATCAATATCATTTATCCTAATGAGCAGAATATGTTTATAGGGCCTAATCACAAAATG
130 AGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG
* * * *
1965153 AATGAAGATCATTACTAAAATCCATGTTTGTCTTATTTGAGGCACGAAATTAGACTTTACAAAAT
195 AATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAA
* * ** *
1965218 TTGGTGGGAAAAAAACCTTTCTTGCGAAACCAAAGCATTAATATGATAAAATCCTAATGAGAACA
260 TTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGAT-GTATCCTAATGAGAAGA
** * **
1965283 CTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGATTAGTATGACCCTTCATGTATGTCTTATT
324 CTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGATTAGTATGACTATTCATGTTTGTCGAATT
* * ** * *
1965348 TAAAAGAAAAACATTGATTCTATCAAAAATAATGGAAAGAAAAGCTTTTCTTGCAG-CACCAAGG
389 TAAGAGAAAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCTGACACCAAAG
*
1965412 CATCAATGTCATGTATCGTATTG
454 CATCAATGTCATGTATCCTATTG
** * *
1965435 AAAAGAATGTGTCTTGGCATCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTG
1 AAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTG
* **
1965500 TCTTATTTAAAGGATGAACTTTAATTTTAAGGAAGGTAAGGCAAAGAAAAGATTTCCATGCAAAA
66 TCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAA
*
1965565 GAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCACTAAAA-G
131 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC-AAAATG
** * *
1965629 AATGAAGATCATTACTAGAATCCACATTTGTCTCATTTGAAGCATGAACTTAGACTTTACAAAAA
195 AATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAA
* * * ** **
1965694 TTAGAGGGAAAAAAG-CTTTCCTTGCGAAGCCTGAGCATCAATATCCTGTATCCTAATGAGAAGA
260 TTGGTGGGAAAAAAGCCTTT-CTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGA
* * * ** * **
1965758 CTATGTTTATGGTGCCTTATCTTGAAAAGAATGGGGACTAGTATAACCCTTCATGTATGTCTTAT
324 CTATGTTTATGGTGCCTAATCTTGAAAAGAAT-GGGATTAGTATGACTATTCATGTTTGTCGAAT
* * *
1965823 TTAAGAAAAAAACATTGATTCTATCAAAAAAGGTGGAAAGAAAAGCTTTTCTT-CTGACACCAAA
388 TTAAGAGAAAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCTGACACCAAA
1965887 GCATCAATGTCATGTATCCTATTG
453 GCATCAATGTCATGTATCCTATTG
* * *
1965911 AAGGGAATGTGTCTTGGCTTCCTAATCTTAAAAAGAATGGAGACTGTTACGAGAATCGATGCTTG
1 AAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTG
* * *
1965976 TCTTATTT-AAGGAATGAACTTTGATTTTAAAGAAAAT-AGGACAAAGAAAAGATTTTCAGGCAA
66 TCTTATTTAAAGG-ATGAACTTTGATTTTAAGGAAAATAAGG-CAAAGAAAAGATTTCCATGCAA
* * * *
1966039 AAGAAAATCGTCAATATCATTTATCTTAAGGAGGAGAATGTGTTTATAATGCCTAATCACAAAAT
129 AAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAT
* * * *
1966104 GAATGAAGATTATTACTAAAATCCATGTTTGTCTTATTTGAGTCACGAACTTAGACTTTACAAAA
194 GAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAA
* * * ** * *
1966169 ATTGGTAGTAAAAAAGTCTTTCTTGCGAAACTGAAGCATCAATATGATATATCCTAATGAGAAAA
259 ATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGA
* * * * ** *
1966234 CTATGTTTACGGTGCCTAATCTAT-AAAAGAATAAGGATTAGTATCAGTATTCACATTTGTCAAA
324 CTATGTTTATGGTGCCTAATCT-TGAAAAGAAT-GGGATTAGTATGACTATTCATGTTTGTCGAA
* * * * * * *
1966298 TTTAAGAGACAAACTTTAATTATATCAAAAACGATGGAAAGATAATCTTTTCTTGC-GACACCAA
387 TTTAAGAGAAAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCTGACACCAA
* * *
1966362 AGCATCAATGACATATATCCTAGTG
452 AGCATCAATGTCATGTATCCTATTG
* * *
1966387 AAGGGAATGTGTTTTGGCTTCCTAATCTTGAAAA-AATGGAGACTATTATGAGAATCGATGCTTG
1 AAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTG
* * * * * *
1966451 TCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAGGGCAAAGAAAA-ATTTTCACGCCAAA
66 TCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAA
*
1966515 GAAAATCATCAATATCATTTATTCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
131 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
* * * * *
1966580 ATGAAGATCATTTCTAGAATCCTTAG-TCGTCTCATTTGAGACATGAACTTAGACTTTACAAAAA
196 ATGAAGATCATTACTAGAATCCAT-GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAA
* * * * * *
1966644 TTGGTGGGAAAAAAGCCTTTCTAGTGAAGCCAAAGCATCAATATAATGTATCTTAATGAGAAAAC
260 TTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGAC
* * * * * *
1966709 TATGTTTATGATGCCTAATCCTGAAATGAATGAGGATTACTATGAGTACTCATGTTTGTCGAATT
325 TATGTTTATGGTGCCTAATCTTGAAAAGAATG-GGATTAGTATGACTATTCATGTTTGTCGAATT
* * * * *
1966774 TAAG-GGATAACCTTGATTCTATCAAAAATGATGGAAAGAAAAGCTTTTCTTG-TGACACCGAAG
389 TAAGAGAAAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCTGACACCAAAG
*
1966837 CATCAATGTCATGTATCCTAATG
454 CATCAATGTCATGTATCCTATTG
* * * * * * * *
1966860 AAGAGAATGTATTTTGGCTTCCCAATATTGAAAAGAATGGAGATTGTTATGAGAATTGATACTTA
1 AAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTG
* * * *
1966925 TCTTATTTAAGGGATGAACTTTGCTTTTAAGGAAAATAAGGCAAAGGAAAGATTTTCATGCAAAA
66 TCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAA
* * * *
1966990 GAAAATCGTCAATATCATTTATCCTAATGAGGAAAATGTGTTTATAGTGCCAAATCGCAAAATGA
131 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
* * *
1967055 ATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGTACGAACTTAGACTTTTCAAAAAT
196 ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAT
** * * *
1967120 TATTGGGAAAAAAGCCTTTCTTG-GAAAACTAAAGCATCAATATGATGTATCCTAATTAGACGAC
261 TGGTGGGAAAAAAGCCTTTCTTGCG-AAACCAAAGCATCAATATGATGTATCCTAATGAGAAGAC
* * * * *
1967184 TGTGTTTATGGTCCCTAATCTTGAAAAGAATGGAGATT-GTATGAGTATCCATCTTTGTCGAATT
325 TATGTTTATGGTGCCTAATCTTGAAAAGAATGG-GATTAGTATGACTATTCATGTTTGTCGAATT
* * * *
1967248 TAAGAGAGAAACTTTGATTCTATTAAAAACT-GTGAAAAGAAAAGCTTTTCTTG-TGA-ACCGAA
389 TAAGAGAAAAACTTTGATTCTATCAAAAA-TGGTGGAAAGAAAAGCTTTTCTTGCTGACACCAAA
* *
1967310 GCATCAATGTCATGTACCCAAATT-
453 GCATCAATGTCATGTATCC-TATTG
* * * * *
1967334 AGAGGGAATGTGTTTTGGCATCCTAATCTTGAAAAGAAAGGAGACTGTTGCAAGAATCGATGCTT
1 A-AGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTT
* * * * * * *
1967399 GTCTTATTT-AAGGTATAAACTTTGATTTTAAGAAAAATAGGGTAGAGGAAATATTTCCATGCAA
65 GTCTTATTTAAAGG-ATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAA
* * * *
1967463 AAGAAAATCATCAATATCATTTATCCTAATGCGAAAAATGTATTTATAGTGCCTAATCACAAAAT
129 AAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAT
** * * * *
1967528 GAATGAAGATGC-TTA-TAGAATCCACATTTATCTCATTTGAGACACGAACTTTGAC-TTA-ATG
194 GAATGAAGAT-CATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA-A
* * * *
1967589 AAATTGGTGAGAAGAATGCCTTTCTTGTGAAAC
257 AAATTGGTGGGAAAAAAGCCTTTCTTGCGAAAC
1967622 ATATGCGTCA
Statistics
Matches: 2687, Mismatches: 407, Indels: 97
0.84 0.13 0.03
Matches are distributed among these distances:
472 1 0.00
473 127 0.05
474 397 0.15
475 566 0.21
476 1133 0.42
477 64 0.02
478 308 0.11
479 91 0.03
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.31
Consensus pattern (476 bp):
AAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTG
TCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAA
GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAT
TGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACT
ATGTTTATGGTGCCTAATCTTGAAAAGAATGGGATTAGTATGACTATTCATGTTTGTCGAATTTA
AGAGAAAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCTGACACCAAAGCA
TCAATGTCATGTATCCTATTG
Found at i:1966000 original size:159 final size:155
Alignment explanation
Indices: 1964028--1967426 Score: 843
Period size: 158 Copynumber: 21.4 Consensus size: 155
1964018 TTGACTTCCC
* ** * *
1964028 AATCTTAAAAAGAATGGAGACTGTTACGAGAATTGATGCGTGTCTTATTTAAGGGATGAACTTTG
1 AATCTTGAAAAGAATGGAGACTGTTACGAGAATCCATGCTTGTCTTATTTAAGGAATGAACTTTG
* * * * * * ** ** * * *
1964093 ATTTTATGGAAAATAGG-GCAAAGGAAAGATTTCTATTTTAAAGAAAATCGTCAATATCATTTAT
66 A-TTTAT-CAAAAAAGGTGGAAAGAAAAGCTTT-TCTTCGAAACCAAAGCATCAATATCATGTAT
* * *
1964157 CTTAATGAGGAGAATGTGTTTATAGCGCCT
128 CCTAATGAGG-GAATGTGTTT-TGGTGCCT
** * * * * * * * *
1964187 AATC-ACAAAATGAATGAAGA-TCATTACTAGAATCCATGTTTCTCTCATTTGAGGCATGAACTT
1 AATCTTGAAAA-GAATGGAGACT-GTTACGAGAATCCATGCTTGTCTTATTTAAGGAATGAACTT
* * * * * * *
1964250 AGACTTTA-CAAAAATTGGTGGGAA-AAAAGCCTTTCTTGTGAAACTAAAGCATCAATATGATGT
64 TGA-TTTATCAAAAA-AGGTGGAAAGAAAAGCTTTTCTT-CGAAACCAAAGCATCAATATCATGT
* * * *
1964313 ATCCTAATGAGAAGACTATGTTTATGGTCCCT
126 ATCCTAATGAG-GGAATGTGTTT-TGGTGCCT
* * * * * * * ** * *
1964345 AATCCTAAAAAGAATGGAGATTG-TATGAGTATCTATGTTTGTCGAATTCAAGAGACA--AATTT
1 AATCTTGAAAAGAATGGAGACTGTTACGAGAATCCATGCTTGTCTTATTTAAG-GA-ATGAACTT
* ** * * *
1964407 TGATTCTAACAAAAACTGTGAAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTA
64 TGATT-TATCAAAAAAGGTGGAAAGAAAAGCTTTTCTT-CGAAACCAAAGCATCAATATCATGTA
* * *
1964472 CCCTAATTAAAGGGAATGTGTTTTGGCAT-CCC
127 TCCTAA-T-GAGGGAATGTGTTTTGG--TGCCT
* * ** * * *
1964504 AATCTTAAAAAGAATGGAGACTGTTATGAGAATAGATACTTGTCTTTTTTATTA-G-ATGAATTT
1 AATCTTGAAAAGAATGGAGACTGTTACGAGAATCCATGCTTGTCTTATTTA--AGGAATGAACTT
* ** * * * * * * ** * *
1964567 TCATTTTAAGAAAAATAAGGCGG--AGGAAAGATTTCCATGCAAAAGAAAATCATCAATATCATT
64 TGA-TTT-ATCAAAA-AAGGTGGAAAGAAAAGCTTTTC-TTCGAAACCAAAGCATCAATATCATG
* * * *
1964630 TATCCTAAAGAGGAGAACGTGTTTATAGTGCGT
125 TATCCTAATGAGG-GAATGTGTTT-TGGTGCCT
** * * * * * * * * * ** * * ** *
1964663 AATC-ACAAAATAAATGAAGA-TCCTTACTAAAATCCAAGTTTATCTCATTTGGGGCACGTGCTA
1 AATCTTGAAAA-GAATGGAGACT-GTTACGAGAATCCATGCTTGTCTTATTTAAGGAATGAACTT
** * * ** * ** *
1964726 ACACTTAATGAAAATTGG-GGAGAAG-AAAGCCTTTCTT-GCAAAAAAAATGCATCAATATGATG
64 TGA-TTTATCAAAAAAGGTGGA-AAGAAAAGCTTTTCTTCG-AAACCAAA-GCATCAATATCATG
* * *
1964788 TATCCTAATGAGAAGACTATGTTTATGGTGCCT
125 TATCCTAATGAG-GGAATGTGTTT-TGGTGCCT
* * * * ** * *
1964821 AATCTTCAAAAGAATGGGGATTAG-TATGACTATTCATGTTTGTCTTATTTAAGAGACA--AACT
1 AATCTTGAAAAGAATGGAGACT-GTTACGAGAATCCATGCTTGTCTTATTTAAG-GA-ATGAACT
* * * * ** *
1964883 TTGACTCTAT-AAAAAATGGTGGAAAAAAAAAAGCTTTTATTAGGACTCCAAGGCATCAATATCA
63 TTGA-TTTATCAAAAAA-GGTGG--AAAGAAAAGCTTTTCTT-CGAAACCAAAGCATCAATATCA
* * * * *
1964947 TATATCTTAATAACGGGAATGTGTTTTGGCTTCCC
123 TGTATCCTAATGA-GGGAATGTGTTTTGG-TGCCT
* * * ** * *
1964982 AATCTTGAAAAGAATGGAAACTATTACAAGAATTGATACTTGTCTTATTTAAGGGATGAACTTTG
1 AATCTTGAAAAGAATGGAGACTGTTACGAGAATCCATGCTTGTCTTATTTAAGGAATGAACTTTG
* * * * * * ** ** *
1965047 ATTT-TAAGGAAAATAGG-GTAATGAAAAGATTTTCATGCAAAAGAAAATTATCAATATCATTTA
66 ATTTATCA--AAAA-AGGTGGAAAGAAAAGCTTTTC-TTCGAAACCAAAGCATCAATATCATGTA
* *
1965110 TCCTAATGAGCAGAATATGTTTATAGG-GCCT
127 TCCTAATGAG-GGAATGTGTTT-T-GGTGCCT
** * * * * * * * * *
1965141 AATC-ACAAAATGAATGAAGA-TCATTACTAAAATCCATGTTTGTCTTATTTGAGGCACGAAATT
1 AATCTTGAAAA-GAATGGAGACT-GTTACGAGAATCCATGCTTGTCTTATTTAAGGAATGAACTT
* ** * * *
1965204 AGACTTTA-CAAAATTTGGTGGGAAA-AAAA-CCTTTCTTGCGAAACCAAAGCATTAATATGATA
64 TGA-TTTATCAAAA-AAGGT-GGAAAGAAAAGCTTTTCTT-CGAAACCAAAGCATCAATATCAT-
** * *
1965266 AAATCCTAATGA-GAACACTATGTTTATGGTGCCT
124 GTATCCTAATGAGGGA-A-TGTGTTT-TGGTGCCT
* * *** * * * *
1965300 AATCTTGAAAAGAATGG-GATTAG-TATGACCCTTCATG-TATGTCTTATTTAAAAGAA-AAACA
1 AATCTTGAAAAGAATGGAGACT-GTTACGAGAATCCATGCT-TGTCTTATTT-AAGGAATGAACT
* * * *
1965361 TTGATTCTATCAAAAATA-ATGGAAAGAAAAGCTTTTCTT-GCAGCACCAAGGCATCAATGTCAT
63 TTGATT-TATCAAAAA-AGGTGGAAAGAAAAGCTTTTCTTCG-A-AACCAAAGCATCAATATCAT
* * ** * *
1965424 GTATCGTATTGAAAAGAATGTGTCTTGGCAT-CCC
124 GTATCCTAATG-AGGGAATGTGTTTTGG--TGCCT
*
1965458 AATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAAGG-ATGAACTTT
1 AATCTTGAAAAGAATGGAGACTGTTACGAGAATCCATGCTTGTCTTATTT-AAGGAATGAACTTT
* ** * * * * ** * *
1965522 AATTT-T-AAGGAAGGTAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTT
65 GATTTATCAAAAAAGGT--GG-AAAGAAAAGCTTTTC-TTCGAAACCAAAGCATCAATATCATGT
* *
1965585 ATCCTAATAAGGAGAATGTGTTTATAGTGCCT
126 ATCCTAATGAGG-GAATGTGTTT-TGGTGCCT
* * * * *** * *
1965617 AATCACT-AAAAGAATGAAGA-TCATTACTAGAATCCACATTTGTCTCATTTGAA-GCATGAACT
1 AATC-TTGAAAAGAATGGAGACT-GTTACGAGAATCCATGCTTGTCTTATTT-AAGGAATGAACT
* * * ** *
1965679 TAGACTTTA-CAAAAATTAGAG-GG-AA-AAAAGCTTTCCTTGCGAAGCCTGAGCATCAATATCC
63 TTGA-TTTATCAAAAA--AG-GTGGAAAGAAAAGCTTTTCTT-CGAAACCAAAGCATCAATATCA
* * *
1965740 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCT
123 TGTATCCTAATGAG-GGAATGTGTTT-TGGTGCCT
* * *** * * ** *
1965775 TATCTTGAAAAGAATGGGGACTAGTATA--ACCCTTCATG-TATGTCTTATTTAAGAAAAAAACA
1 AATCTTGAAAAGAATGGAGACT-GT-TACGAGAATCCATGCT-TGTCTTATTTAAGGAATGAACT
* *
1965837 TTGATTCTATCAAAAAAGGTGGAAAGAAAAGCTTTTCTTCTGACACCAAAGCATCAATGTCATGT
63 TTGATT-TATCAAAAAAGGTGGAAAGAAAAGCTTTTCTTC-GAAACCAAAGCATCAATATCATGT
* * *
1965902 ATCCTATTGAAGGGAATGTGTCTTGGCTTCCT
126 ATCCTAATG-AGGGAATGTGTTTTGG-TGCCT
* *
1965934 AATCTTAAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGAATGAACTTTG
1 AATCTTGAAAAGAATGGAGACTGTTACGAGAATCCATGCTTGTCTTATTTAAGGAATGAACTTTG
* * ** * ** * * *
1965999 ATTT-T-AAAGAAA-ATAGGACAAAGAAAAGATTTTCAGGCAAAAGAAAATCGTCAATATCATTT
66 ATTTATCAAA-AAAGGT-GG--AAAGAAAAGCTTTTC-TTCGAAACCAAAGCATCAATATCATGT
* * **
1966061 ATCTTAAGGAGGAGAATGTGTTTATAATGCCT
126 ATCCTAATGAGG-GAATGTGTTT-TGGTGCCT
** * * * * * * * ** * *
1966093 AATC-ACAAAATGAATGAAGATTATTACTAAAATCCATGTTTGTCTTATTTGAGTCACGAACTTA
1 AATCTTGAAAA-GAATGGAGACTGTTACGAGAATCCATGCTTGTCTTATTTAAGGAATGAACTTT
* * * ** * *
1966157 GACTTTA-CAAAAATTGGTAGTAA-AAAAG-TCTTTCTTGCGAAACTGAAGCATCAATATGATAT
65 GA-TTTATCAAAAA-AGGTGGAAAGAAAAGCT-TTTCTT-CGAAACCAAAGCATCAATATCATGT
** * *
1966219 ATCCTAATGAGAAAACTATGTTTACGGTGCCT
126 ATCCTAATGAGGGAA-TGTGTTT-TGGTGCCT
* * * **
1966251 AATCTAT-AAAAGAAT-AAGGATTAG-TATC-AGTATTCACAT--TTGTCAAATTTAAGAGACA-
1 AATCT-TGAAAAGAATGGA-GACT-GTTA-CGAG-AATC-CATGCTTGTCTTATTTAAG-GA-AT
* * * * * *
1966309 -AACTTTAATTATATCAAAAACGATGGAAAGATAATCTTTTCTTGCGACACCAAAGCATCAATGA
58 GAACTTTGATT-TATCAAAAAAGGTGGAAAGAAAAGCTTTTCTT-CGAAACCAAAGCATCAAT-A
* * *
1966373 -CATATATCCTAGTGAAGGGAATGTGTTTTGGCTTCCT
120 TCATGTATCCTAATG-AGGGAATGTGTTTTGG-TGCCT
* * * *
1966410 AATCTTGAAAA-AATGGAGACTATTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTG
1 AATCTTGAAAAGAATGGAGACTGTTACGAGAATCCATGCTTGTCTTATTTAAGGAATGAACTTTG
* * * * * ** * *
1966474 ATTTTATGGAAAATAGG-GCAAAGAAAA-ATTTTC-ACGCCAAAGAAAATCATCAATATCATTTA
66 A-TTTAT-CAAAAAAGGTGGAAAGAAAAGCTTTTCTTCG--AAACCAAAGCATCAATATCATGTA
* *
1966536 TTCTAATGAGGAGAATGTGTTTATAGTGCCT
127 TCCTAATGAGG-GAATGTGTTT-TGGTGCCT
** * * * * * *
1966567 AATC-ACAAAATGAATGAAGATCAT-TT-CTAGAATCCTTAG-TCGTCTCATTTGA-GACATGAA
1 AATCTTGAAAA-GAATGGAGA-C-TGTTACGAGAATCCAT-GCTTGTCTTATTTAAGGA-ATGAA
* * * * * *
1966627 CTTAGACTTTA-CAAAAATTGGTGGGAA-AAAAGCCTTTCTAGT-GAAGCCAAAGCATCAATATA
61 CTTTGA-TTTATCAAAAA-AGGTGGAAAGAAAAGCTTTTCT--TCGAAACCAAAGCATCAATATC
* ** * *
1966689 ATGTATCTTAATGAGAAAACTATGTTTATGATGCCT
122 ATGTATCCTAATGAGGGAA-TGTGTTT-TGGTGCCT
* * * ** * * * ** * *
1966725 AATCCTGAAATGAAT-GAGGATTACTATGAGTA-CTCATGTTTGTCGAATTTAAGGGAT-AACCT
1 AATCTTGAAAAGAATGGA-GACTGTTACGAGAATC-CATGCTTGTCTTATTTAAGGAATGAACTT
* * * * * *
1966787 TGATTCTATCAAAAATGATGGAAAGAAAAGCTTTTCTTGTGACACCGAAGCATCAATGTCATGTA
64 TGATT-TATCAAAAAAGGTGGAAAGAAAAGCTTTTCTT-CGAAACCAAAGCATCAATATCATGTA
* * * *
1966852 TCCTAATGAAGAGAATGTATTTTGGCTTCCC
127 TCCTAATG-AGGGAATGTGTTTTGG-TGCCT
* * * ** * * *
1966883 AATATTGAAAAGAATGGAGATTGTTATGAGAATTGATACTTATCTTATTTAAGGGATGAACTTTG
1 AATCTTGAAAAGAATGGAGACTGTTACGAGAATCCATGCTTGTCTTATTTAAGGAATGAACTTTG
* * * * * * * * ** * * *
1966948 CTTT-TAAGGAAAATAAG-GCAAAGGAAAGATTTTCATGCAAAAGAAAATCGTCAATATCATTTA
66 ATTTATCA--AAAA-AGGTGGAAAGAAAAGCTTTTC-TTCGAAACCAAAGCATCAATATCATGTA
* * *
1967011 TCCTAATGAGGAAAATGTGTTTATAGTGCCA
127 TCCTAATGAGG-GAATGTGTTT-TGGTGCCT
* * * * * * *
1967042 AATC--GCAAAATGAATGAAGA-TCATTACTAGAATCCATGTTTGTCTTATTTGAGGTACGAACT
1 AATCTTG-AAAA-GAATGGAGACT-GTTACGAGAATCCATGCTTGTCTTATTTAAGGAATGAACT
* * * * * * *
1967104 TAGACTTT-TCAAAAATTA-TTGGGAA-AAAAGCCTTTCTTGGAAAACTAAAGCATCAATATGAT
63 TTGA-TTTATCAAAAA--AGGTGGAAAGAAAAGCTTTTCTTCG-AAACCAAAGCATCAATATCAT
* * * *
1967166 GTATCCTAATTAGACGACTGTGTTTATGGTCCCT
124 GTATCCTAATGAG-GGAATGTGTTT-TGGTGCCT
* * * **
1967200 AATCTTGAAAAGAATGGAGATTG-TATGAGTATCCAT-CTTTGTCGAATTTAA-GAGA-GAAACT
1 AATCTTGAAAAGAATGGAGACTGTTACGAGAATCCATGC-TTGTCTTATTTAAGGA-ATG-AACT
* ** * * * *
1967261 TTGATTCTATTAAAAACTGTGAAAAGAAAAGCTTTTCTT-GTGAACCGAAGCATCAATGTCATGT
63 TTGATT-TATCAAAAAAGGTGGAAAGAAAAGCTTTTCTTCG-AAACCAAAGCATCAATATCATGT
* *
1967325 ACCCAAATTAGAGGGAATGTGTTTTGGCAT-CCT
126 ATCCTAA-T-GAGGGAATGTGTTTTGG--TGCCT
* * * * * *
1967358 AATCTTGAAAAGAAAGGAGACTGTTGCAAGAATCGATGCTTGTCTTATTTAAGGTATAAACTTTG
1 AATCTTGAAAAGAATGGAGACTGTTACGAGAATCCATGCTTGTCTTATTTAAGGAATGAACTTTG
1967423 ATTT
66 ATTT
1967427 TAAGAAAAAT
Statistics
Matches: 2301, Mismatches: 700, Indels: 479
0.66 0.20 0.14
Matches are distributed among these distances:
155 3 0.00
156 36 0.02
157 239 0.10
158 882 0.38
159 876 0.38
160 134 0.06
161 111 0.05
162 15 0.01
163 4 0.00
164 1 0.00
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.31
Consensus pattern (155 bp):
AATCTTGAAAAGAATGGAGACTGTTACGAGAATCCATGCTTGTCTTATTTAAGGAATGAACTTTG
ATTTATCAAAAAAGGTGGAAAGAAAAGCTTTTCTTCGAAACCAAAGCATCAATATCATGTATCCT
AATGAGGGAATGTGTTTTGGTGCCT
Found at i:1966600 original size:158 final size:159
Alignment explanation
Indices: 1965020--1967537 Score: 550
Period size: 159 Copynumber: 15.9 Consensus size: 159
1965010 AGAATTGATA
*** * *
1965020 CTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGTAATGAAAAGATTTTCATGC
1 CTTGTCTTATTTAAGGGATGAACTTTGATTTTATCAAAAATAGGGCAAAGAAAA-ATTTTCATGC
** * * * * *
1965085 AAAAGAAAATTATCAATATCATTTATCCTAATGAGCAGAATATGTTTATAG-GGCCTAATCACAA
65 AAAAGAAAAGCATCAATATCATGTATCCTAATGAGGAAAATGTGTTTATAGATGCCTAATCACAA
* *
1965149 AATGAATGAAGATCATTACTAAAATCCATG
130 AATGAATGAAGATCATTTCTAGAATCCATG
* * * * * * * * * * ** *
1965179 TTTGTCTTATTTGAGGCACGAAATTAGACTTTA-CAAAATTTGGTGGGAAA-AAAACCTTTCTTG
1 CTTGTCTTATTTAAGGGATGAACTTTGATTTTATCAAAA-ATAG-GGCAAAGAAAAATTTTCATG
* ** * * ** * * *
1965242 CGAAACCAAAGCATTAATATGATAAAATCCTAATGA-GAACACTATGTTTAT-GGTGCCTAATCT
64 CAAAAGAAAAGCATCAATATCAT-GTATCCTAATGAGGAA-AATGTGTTTATAGATGCCTAATC-
** * * * * * *
1965305 TGAAAA-GAATG-GGATTA-GTAT-GACCCTTCATG
126 ACAAAATGAATGAAGATCATTTCTAGA--ATCCATG
** ** * * * * *
1965337 -TATGTCTTATTTAAAAGAAAAACATTGATTCTATCAAAAATAATGG-AAAGAAAAGCTTTTCTT
1 CT-TGTCTTATTTAAGGGATGAACTTTGATTTTATCAAAAAT-AGGGCAAAGAAAA-ATTTTCAT
** ** * * * * * * * *
1965400 GCAGCACCAAGGCATCAATGTCATGTATCGTATTGA-AAAGAATGTGTCT-TGGCAT-CCCAATC
63 GCAAAAGAAAAGCATCAATATCATGTATCCTAATGAGGAA-AATGTGTTTATAG-ATGCCTAATC
** * * *
1965462 TTGAAAA-GAATGGAGA-C-TGTTACGAGAATCGATG
126 -ACAAAATGAATGAAGATCAT-TT-CTAGAATCCATG
* * *** ** * *
1965496 CTTGTCTTATTTAAAGGATGAACTTTAATTTTAAGGAAGGTAAGGCAAAGAAAAGATTTCCATGC
1 CTTGTCTTATTTAAGGGATGAACTTTGATTTTATCAAAAATAGGGCAAAGAAAA-ATTTTCATGC
* * * *
1965561 AAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAG-TGCCTAATCACTA
65 AAAAGAAAAGCATCAATATCATGTATCCTAATGAGGAAAATGTGTTTATAGATGCCTAATCAC-A
* **
1965625 AAA-GAATGAAGATCATTACTAGAATCCACA
129 AAATGAATGAAGATCATTTCTAGAATCCATG
* * * * * * ** * *
1965655 TTTGTCTCATTTGAA-GCATGAACTTAGACTTTA-CAAAAATTAGAGGGAAA-AAAGCTTTCCTT
1 CTTGTCTTATTT-AAGGGATGAACTTTGATTTTATCAAAAA-TAG-GGCAAAGAAAAATTTTCAT
* *** * * * * *
1965717 GC-GAAGCCTGAGCATCAATATCCTGTATCCTAATGA-GAAGACTATGTTTAT-GGTGCCTTATC
63 GCAAAAG-AAAAGCATCAATATCATGTATCCTAATGAGGAA-AATGTGTTTATAGATGCCTAATC
** ** * * * *
1965779 TTGAAAA-GAATGGGGA-C-TAGTATA-ACCCTTCATG
126 -ACAAAATGAATGAAGATCAT-TTCTAGA--ATCCATG
** ** * * * *
1965813 -TATGTCTTATTTAAGAAAAAAACATTGATTCTATCAAAAA-AGGTGGAAAGAAAAGCTTTTC-T
1 CT-TGTCTTATTTAAGGGATGAACTTTGATTTTATCAAAAATAGG-GCAAAGAAAA-ATTTTCAT
* * * ** * * * * * * *
1965875 TCTGACACCAAAGCATCAATGTCATGTATCCTATTGAAGG-GAATGTGTCT-TGGCTTCCTAATC
63 GC-AAAAGAAAAGCATCAATATCATGTATCCTAATG-AGGAAAATGTGTTTATAGATGCCTAATC
** * * * *
1965938 TTAAAAAGAATGGAGA-C-TGTTACGAGAATCGATG
126 ACAAAATGAATGAAGATCAT-TT-CTAGAATCCATG
* * * *
1965972 CTTGTCTTATTTAAGGAATGAACTTTGATTTTA-AAGAAAATAGGACAAAGAAAAGATTTTCAGG
1 CTTGTCTTATTTAAGGGATGAACTTTGATTTTATCA-AAAATAGGGCAAAGAAAA-ATTTTCATG
* * * * * *
1966036 CAAAAGAAAATCGTCAATATCATTTATCTTAAGGAGGAGAATGTGTTTATA-ATGCCTAATCACA
64 CAAAAGAAAAGCATCAATATCATGTATCCTAATGAGGAAAATGTGTTTATAGATGCCTAATCACA
* * *
1966100 AAATGAATGAAGATTATTACTAAAATCCATG
129 AAATGAATGAAGATCATTTCTAGAATCCATG
* * ** * * * * * * *
1966131 TTTGTCTTATTTGAGTCACGAACTTAGACTTTA-CAAAAATTGGTAG-TAA-AAAAGTCTTTCTT
1 CTTGTCTTATTTAAGGGATGAACTTTGATTTTATCAAAAATAGG--GCAAAGAAAAAT-TTTCAT
* *** * * * * *
1966193 GCGAAACTGAAGCATCAATATGATATATCCTAATGA-GAAAACTATGTTTA-CGGTGCCTAATCT
63 GCAAAAGAAAAGCATCAATATCATGTATCCTAATGAGGAAAA-TGTGTTTATAGATGCCTAATC-
* * * *
1966256 ATAAAA-GAAT-AAGGATTAGTATC-AGTATTCACAT-
126 ACAAAATGAATGAA-GATCA-TTTCTAG-AATC-CATG
** * ** * * * * ** *
1966290 -TTGTCAAATTTAAGAGACAAACTTTAATTATATCAAAAACGATGG-AAAGATAATCTTTTCTTG
1 CTTGTCTTATTTAAGGGATGAACTTTGATTTTATCAAAAA-TAGGGCAAAGA-AAAATTTTCATG
* * ** * * * * * *
1966353 CGACACCAAAGCATCAATGA-CATATATCCTAGTGAAGG-GAATGTGTTT-TGGCTTCCTAATCT
64 CAAAAGAAAAGCATCAAT-ATCATGTATCCTAATG-AGGAAAATGTGTTTATAGATGCCTAATC-
** * * *
1966415 TGAAAA--AATGGAGA-CTATTAT-GAGAATCGATG
126 ACAAAATGAATGAAGATC-ATT-TCTAGAATCCATG
** * *
1966447 CTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAGGGCAAAGAAAAATTTTCACGCC
1 CTTGTCTTATTTAAGGGATGAACTTTGATTTTATCAAAAATAGGGCAAAGAAAAATTTTCATGCA
* * * *
1966512 AAAGAAAATCATCAATATCATTTATTCTAATGAGGAGAATGTGTTTATAG-TGCCTAATCACAAA
66 AAAGAAAAGCATCAATATCATGTATCCTAATGAGGAAAATGTGTTTATAGATGCCTAATCACAAA
*
1966576 ATGAATGAAGATCATTTCTAGAATCCTTAG
131 ATGAATGAAGATCATTTCTAGAATCCAT-G
* * * ** * * * * ***
1966606 -TCGTCTCATTTGAGACATGAACTTAGACTTTA-CAAAAATTGGTGGGAAA-AAAGCCTTTCTAG
1 CTTGTCTTATTTAAGGGATGAACTTTGATTTTATCAAAAA-TAG-GGCAAAGAAAAATTTTC-A-
* * * *
1966668 TG---AAGCCAAAGCATCAATATAATGTATCTTAATGA-GAAAACTATGTTTAT-GATGCCTAAT
62 TGCAAAAG-AAAAGCATCAATATCATGTATCCTAATGAGGAAAA-TGTGTTTATAGATGCCTAAT
* * * *
1966728 C-CTGAAATGAATG-AG--GATTACTATGAGTACTCATG
125 CAC-AAAATGAATGAAGATCATTTCTA-GAAT-C-CATG
* ** * * * * *
1966763 TTTGTCGAATTTAAGGGAT-AACCTTGATTCTATCAAAAATGATGG-AAAGAAAAGCTTTTCTTG
1 CTTGTCTTATTTAAGGGATGAACTTTGATTTTATCAAAAAT-AGGGCAAAGAAAA-ATTTTCATG
** * *** * * * * * * * *
1966826 TGACACCGAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTATTT-TGGCTTCCCAAT-ATT
64 CAAAAGAAAAGCATCAATATCATGTATCCTAATGAGGAAAATGTGTTTATAGATGCCTAATCA--
* * * ** *
1966889 GAAAA-GAATGGAGAT--TGTTATGAGAATTGATA
127 CAAAATGAATGAAGATCAT-TTCT-AGAATCCATG
* * *** * *
1966921 CTTATCTTATTTAAGGGATGAACTTTGCTTTTAAGGAAAATAAGGCAAAGGAAAGATTTTCATGC
1 CTTGTCTTATTTAAGGGATGAACTTTGATTTTATCAAAAATAGGGCAAA-GAAAAATTTTCATGC
* * * * *
1966986 AAAAGAAAATCGTCAATATCATTTATCCTAATGAGGAAAATGTGTTTATAG-TGCCAAATCGCAA
65 AAAAGAAAAGCATCAATATCATGTATCCTAATGAGGAAAATGTGTTTATAGATGCCTAATCACAA
*
1967050 AATGAATGAAGATCATTACTAGAATCCATG
130 AATGAATGAAGATCATTTCTAGAATCCATG
* * * * * * *** *
1967080 TTTGTCTTATTTGAGGTACGAACTTAGACTTT-TCAAAAATTATTGGG-AAA-AAAGCCTTTCTT
1 CTTGTCTTATTTAAGGGATGAACTTTGATTTTATCAAAAA-TA--GGGCAAAGAAAAATTTTCAT
* ** * * * * * *
1967142 GGAAAACTAAAGCATCAATATGATGTATCCTAATTA-GACGACTGTGTTTAT-GGTCCCTAATCT
63 GCAAAAGAAAAGCATCAATATCATGTATCCTAATGAGGA-AAATGTGTTTATAGATGCCTAATC-
** * * * *
1967205 TGAAAA-GAATGGAGAT--TGTATGAGTATCCAT-
126 ACAAAATGAATGAAGATCATTTCT-AGAATCCATG
** * * * * * * *
1967236 CTTTGTCGAATTTAAGAGA-GAAACTTTGATTCTATTAAAAACT-GTGAAAAGAAAAGCTTTTCT
1 C-TTGTCTTATTTAAGGGATG-AACTTTGATTTTATCAAAAA-TAGGGCAAAGAAAA-ATTTTCA
* ** * * * * *
1967299 TGTGAACCG--AAGCATCAATGTCATGTACCCAAATTAGAGG-GAATGTGTTT-TGGCAT-CCTA
62 TG-CAAAAGAAAAGCATCAATATCATGTATCCTAA-T-GAGGAAAATGTGTTTATAG-ATGCCTA
** * * * *
1967359 ATCTTGAAAA-GAAAGGAGA-C-TGTTGCAAGAATCGATG
123 ATC-ACAAAATGAATGAAGATCAT-TT-CTAGAATCCATG
* * ** * * * *
1967396 CTTGTCTTATTTAAGGTATAAACTTTGATTTTAAGAAAAATAGGGTAGAGGAAATATTTCCATGC
1 CTTGTCTTATTTAAGGGATGAACTTTGATTTTATCAAAAATAGGGCA-AAGAAAAATTTTCATGC
* * * * *
1967461 AAAAGAAAATCATCAATATCATTTATCCTAATGCGAAAAATGTATTTATAG-TGCCTAATCACAA
65 AAAAGAAAAGCATCAATATCATGTATCCTAATGAGGAAAATGTGTTTATAGATGCCTAATCACAA
1967525 AATGAATGAAGAT
130 AATGAATGAAGAT
1967538 GCTTATAGAA
Statistics
Matches: 1674, Mismatches: 522, Indels: 325
0.66 0.21 0.13
Matches are distributed among these distances:
155 8 0.00
156 28 0.02
157 179 0.11
158 655 0.39
159 706 0.42
160 87 0.05
161 11 0.01
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.31
Consensus pattern (159 bp):
CTTGTCTTATTTAAGGGATGAACTTTGATTTTATCAAAAATAGGGCAAAGAAAAATTTTCATGCA
AAAGAAAAGCATCAATATCATGTATCCTAATGAGGAAAATGTGTTTATAGATGCCTAATCACAAA
ATGAATGAAGATCATTTCTAGAATCCATG
Found at i:1973343 original size:374 final size:375
Alignment explanation
Indices: 1972647--1973384 Score: 973
Period size: 374 Copynumber: 2.0 Consensus size: 375
1972637 GTATTTATGG
** * *
1972647 TGCCTAATCACAAAATGAATGAAGATGATTACCAGAATCCATGTTTATCTCATTTGACGCACAAA
1 TGCCTAATCACAAAACAAATGAAGATCATTACCAGAAGCCATGTTTATCTCATTTGACGCACAAA
* * *
1972712 ATTATGCTTTACAAAAATTGGTGGAATAAAAAACTTTCTTGCGAAACTAAAGAATCAATATTGTG
66 ATTATACTTTACAAAAATTGGTGGAATAAAAAACTTTCTTGCAAAACCAAAGAATCAATATTGTG
* * *** * * * * *
1972777 TTTCTTAATGAGAAAACTATGCTCATGGTGCCTAGTCTAGAAAAGATTGAGGATTTGTTTGACGA
131 TATCTTAATAAGAAAACTATGCTCACAATGCCTAATCCAAAAAAGATTGAGGATTTGTTTAACAA
* ** * *
1972842 TTTATGTTTGTGTTATTTAAAACACAAACTTTGATTCTATCCAAAACAATGGAAAGAAAAGCTTT
196 TTCATGTTTGTCATATTTAAAACACAAACTTTGATTCTATCCAAAAAAATGGAAAGAAAAGCTTA
** * * * *
1972907 TCTTGTGACACCAAAGCATCAATGTCTTGTATACTAATGAAGGGAATGTGTTTTCCTTCCCAATC
261 TCTTGCAACACCAAAGCATCAATGTCATGTATACTAATGAAGGGAATATATTTTCATTCCCAATC
* *
1972972 CTAAAAAGAATAGAGATTGTTA-GAGAATCAATGCTTGTTTTTTTTATAA
326 CTAAAAAGAATAGAGACTATTACGAGAATCAATGCTTGTTTTTTTTATAA
* *
1973021 TGCCTAATCACAAAACAAATGAAGATCATTACCAGAAGCCATGTTTATCTCATTTGAGGCACGAA
1 TGCCTAATCACAAAACAAATGAAGATCATTACCAGAAGCCATGTTTATCTCATTTGACGCACAAA
* ** * *
1973086 CTTATACTTTACAAAAATTGGTGGAA-ATAAAGCCTTTCTTGTAAAACCAAAGCATCAATATTGT
66 ATTATACTTTACAAAAATTGGTGGAATA-AAAAACTTTCTTGCAAAACCAAAGAATCAATATTGT
* *
1973150 GTATCTTAATAAGAAGACTATGTTCACAATGCCTAATCCAAAAAAGATT-AGGGATTTGTTTAAC
130 GTATCTTAATAAGAAAACTATGCTCACAATGCCTAATCCAAAAAAGATTGA-GGATTTGTTTAAC
*
1973214 AATTCATGTTTGTCATATTTAAGTA-ACAAACTTTGATTCTA-CCAAAAAAATGGAAAGAAAAGC
194 AATTCATGTTTGTCATATTTAA-AACACAAACTTTGATTCTATCCAAAAAAATGGAAAGAAAAGC
* * * *
1973277 TTATCTTGCAACACCAAAGCGTCAATTTCATGTATCCTAATGAAGGGAATATATTTTGGATTCCC
258 TTATCTTGCAACACCAAAGCATCAATGTCATGTATACTAATGAAGGGAATATATTTT-CATTCCC
* * * *
1973342 AATCTTGAAAAGACTAGAGACTATTACGAGAATCGATGCTTGT
322 AATCCTAAAAAGAATAGAGACTATTACGAGAATCAATGCTTGT
1973385 CTTATTTAAA
Statistics
Matches: 311, Mismatches: 48, Indels: 9
0.85 0.13 0.02
Matches are distributed among these distances:
373 71 0.23
374 224 0.72
375 16 0.05
ACGTcount: A:0.37, C:0.15, G:0.16, T:0.32
Consensus pattern (375 bp):
TGCCTAATCACAAAACAAATGAAGATCATTACCAGAAGCCATGTTTATCTCATTTGACGCACAAA
ATTATACTTTACAAAAATTGGTGGAATAAAAAACTTTCTTGCAAAACCAAAGAATCAATATTGTG
TATCTTAATAAGAAAACTATGCTCACAATGCCTAATCCAAAAAAGATTGAGGATTTGTTTAACAA
TTCATGTTTGTCATATTTAAAACACAAACTTTGATTCTATCCAAAAAAATGGAAAGAAAAGCTTA
TCTTGCAACACCAAAGCATCAATGTCATGTATACTAATGAAGGGAATATATTTTCATTCCCAATC
CTAAAAAGAATAGAGACTATTACGAGAATCAATGCTTGTTTTTTTTATAA
Found at i:1974219 original size:376 final size:374
Alignment explanation
Indices: 1973487--1974238 Score: 1171
Period size: 375 Copynumber: 2.0 Consensus size: 374
1973477 GAGGAGAATA
* * *
1973487 TTTTTATAGTGCCTAATCACAAAATGAATGAAGATTATTACCAGAATCCATGTTTATCTCATTTG
1 TTTTTATAGTACCTAATCACAAAATGAATGAAGATGATTACCAGAATCCATGTTTATCTCATTGG
* * *
1973552 AGGCATGAAATTATGCTTTACAAAAATTGGTGGGAAAAAAACCTTTCTTGCGAAACCAAAGCATC
66 AGGCACGAAATTATACTTTACAAAAATTGGAGGGAAAAAAACCTTTCTTGCGAAACCAAAGCATC
* * *
1973617 AATATCGTGTATCCTAATGAGAAGACTATGCTCATGGTGCCTAATCCAAAAAAGATTGGGATTTG
131 AATATCATGTATCCTAATAAGAAGACTATGCTAATGGTGCCTAATCCAAAAAAGATTGGGATTTG
*
1973682 TTTGACAATTCATGTTTGTCTTATTTAAAGGACAAACTTTGATTCTATCCAAAACAATGGAAAAA
196 TTTGACAATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCCAAAACAATGGAAAAA
** * *
1973747 AAAGCTTTTCTTGTGACACCAAAGCATCAATGTCCTGTATCCTAATGAAGGGAATGTGTTTTGCT
261 AAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTGCT
1973812 TCCCAATCCGGAAAAAAATGGAGACTGTTATGAGAATCAATGCTTGTCTT
326 TCCCAATCCGGAAAAAAATGGAGACTGTTATGAGAATCAATGCTTGT-TT
* *
1973862 TTTTTATAGTACCTAATTACAAAATGAATGAAGATGATTACCAGAATCCATGTTTATCTTATTGG
1 TTTTTATAGTACCTAATCACAAAATGAATGAAGATGATTACCAGAATCCATGTTTATCTCATTGG
* * * * *
1973927 AGGCACGAACTTATACTTTACAAAAATTGGAGGGAAGAAAGCCTTTCTTGCGAAACTAAGGCATC
66 AGGCACGAAATTATACTTTACAAAAATTGGAGGGAAAAAAACCTTTCTTGCGAAACCAAAGCATC
* * *
1973992 AATATTATTTATCCTAATAAGAAGACTATGGTAATGGTGCCTAATCCAAAAAAGATTGTGGATTT
131 AATATCATGTATCCTAATAAGAAGACTATGCTAATGGTGCCTAATCCAAAAAAGATTG-GGATTT
* * * * *
1974057 GTTTGACAATTCATGTTTTTCTTATTTAAAAGTCAAACTTTGATTTTATCCAAAATAATGGAAAG
195 GTTTGACAATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCCAAAACAATGGAAAA
**
1974122 AAAAGCTTTTCTTGCAACACCAAAGCATTGATGTCATGTATCCTAATGAAGAGAATGTGTTTTGC
260 AAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTGC
* * * *
1974187 TTCCCCATCCTGAAAAGAATGGAGATTGTTATGAGAATCAATGCTTGTTT
325 TTCCCAATCCGGAAAAAAATGGAGACTGTTATGAGAATCAATGCTTGTTT
1974237 TT
1 TT
1974239 ATGGGATGAA
Statistics
Matches: 341, Mismatches: 35, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
375 173 0.51
376 168 0.49
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (374 bp):
TTTTTATAGTACCTAATCACAAAATGAATGAAGATGATTACCAGAATCCATGTTTATCTCATTGG
AGGCACGAAATTATACTTTACAAAAATTGGAGGGAAAAAAACCTTTCTTGCGAAACCAAAGCATC
AATATCATGTATCCTAATAAGAAGACTATGCTAATGGTGCCTAATCCAAAAAAGATTGGGATTTG
TTTGACAATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCCAAAACAATGGAAAAA
AAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTGCT
TCCCAATCCGGAAAAAAATGGAGACTGTTATGAGAATCAATGCTTGTTT
Found at i:1974893 original size:475 final size:464
Alignment explanation
Indices: 1973864--1975249 Score: 1580
Period size: 472 Copynumber: 2.9 Consensus size: 464
1973854 CTTGTCTTTT
* * * * *
1973864 TTTATAGTACCTAATTACAAAATGAATGAAGATGATTACCAGAATCCATGTTTATCTTATTGGAG
1 TTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACCAAAATCCATGTTTATCTTATT-TAG
* * * * *
1973929 GCACGAACTTATACTTTACAAAAATTGGAGGGAAGAAAGCCTTTCTTGCGAAACTAAGGCATCAA
65 GCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCATGCGAAACTAAAGCATCAA
* * * * ** *
1973994 TATTATTTATCCTAATAAGAAGACTATGGTAATGGTGCCTAATCCAAAAAAGATTGTGGATTTGT
130 TATGA--TATCCTAATGAGAAGACTATGATTATGGTGCCTAATCCTGAAAAGAATG-GGA-TTGT
* * * * * * *
1974059 TTGACAATTCATGTTTTTCTTATTTAAAAGTCAAACTTTGATTTTATCCAAAATAATGGAAAGAA
191 ATGACTATTCATGTTTATCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAT-AT-GAAAGAA
* * *
1974124 AAGCTTTTCTTGCAACACCAAAGCATTGATGTCATGTATCCTAATGAAGAGAATGTGTTTTGCTT
254 AAGCTTTTCTTGCGACACCAAAGCATTAATGTCATGTATCCTAATGAGGA-AATGTGTTTTGCTT
* * *
1974189 CCCCATCCTGAAAAGAATGGAGATTGTTATGAGAATCAATGCTTGT-TT-TTATGGGATGAACTT
318 CCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTA-GGGATGAACTT
*
1974252 TGATTTTAAGGGAAATAGGGCAAAGAAAAG-TTTTCCATGCAAAAGAAAATCATCAATATCATTT
382 TGATTTTAAGGAAAATAGGGC-AAGAAAAGATTTT-CATGCAAAAGAAAATCATCAATATCATTT
* *
1974316 ATCGTAATGAGGAGAATATG
445 ATCCTAATGAGGAAAATATG
* *
1974336 GTTATAGTGCTTAATCACAAAATGAATGAAGATCATTACCAAAATCCATGTTTATCTTATTTAAG
1 TTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACCAAAATCCATGTTTATCTTATTT-AG
* * * *
1974401 GCATGAACTTTGACTTTACAAAAATTAGTGGGAAGAAAGCCTTTCATGCGAATCCAAAGCATCAA
65 GCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCATGCGAAACTAAAGCATCAA
* * * * *
1974466 TATCGGATATACTAATGAGAAGACTATGATTATGGTGCCTTATCTTGATAAGAATGAGGGTTAGT
130 TAT--GATATCCTAATGAGAAGACTATGATTATGGTGCCTAATCCTGAAAAGAATG-GGATT-GT
* * * * *
1974531 ATGATTATTCATGTTTGTCTTATTTTAGAGACAAACTTTGATTCTATCAAAAATGGTGAAAAAAA
191 ATGACTATTCATGTTTATCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAT-ATGAAAGAAA
** * * *
1974596 AGCTTTTCTTATGACACCAAAGCATCAATGTCTTGTATCCTAATGATGGAAACGTGTTTTGACTT
255 AGCTTTTCTTGCGACACCAAAGCATTAATGTCATGTATCCTAATGA-GGAAATGTGTTTTG-CTT
* *
1974661 CCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATCTCAGGGATGGACT
318 CCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTAT-T-AGGGATGAACT
* * **
1974726 TTAATTTTAAGGAAAATAGGGCGAAGAAAAGATTTTCATGCAAAAGAAAATCGTTTATATCATTT
381 TTGATTTTAAGGAAAATAGGGC-AAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTT
*
1974791 ATCCTAATGAGGAAAATGTG
445 ATCCTAATGAGGAAAATATG
* * *** *
1974811 TTTATAGTGCCTAATCACAAAATGAATGAAGCTCATTACTAAAATCCATGTTCGCCTCATTCTAG
1 TTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACCAAAATCCATGTTTATCTTATT-TAG
* *
1974876 GCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAACCCTTTCATGCGAAACTAAAGCA-CAA
65 GCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCATGCGAAACTAAAGCATCAA
* * * *
1974940 AATGATGTATCCTAATGAGAAGACTGTGTTTATGGTCCCTAATCCTGAAAAGAATGGAGATTGTA
130 TATGA--TATCCTAATGAGAAGACTATGATTATGGTGCCTAATCCTGAAAAGAATGG-GATTGTA
* ** *
1975005 TGAGTATTCATGTTTATCGAATTTAAGAGATAAACTTTGATTCTATCAAAAACTATGTAAAGAAA
192 TGACTATTCATGTTTATCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA-TATG-AAAGAAA
* ** * * *
1975070 AGCATTTT-TTGCGACATCAAAGTTTTAATATCATGTA-CCTTATTGAAGGGAATGTGTTTTGGC
255 AGC-TTTTCTTGCGACACCAAAGCATTAATGTCATGTATCC-TAATG-AGGAAATGTGTTTT-GC
* * * * * *
1975133 AT-CCAATCTTGAAAAGAATAGAGACTGTTATGAAAATCGATGTTTATCTTATTTAAGGGATGAA
316 TTCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTA-TT-AGGGATGAA
* * *
1975197 CTTTGATTTCAAGGAAAATAGGGTCAAGAAAGGATTTCCATGCAAAAGAAAAT
379 CTTTGATTTTAAGGAAAATAGGG-CAAGAAAAGATTTTCATGCAAAAGAAAAT
1975250 TGGTGGGAAA
Statistics
Matches: 773, Mismatches: 118, Indels: 45
0.83 0.13 0.05
Matches are distributed among these distances:
471 59 0.08
472 254 0.33
473 155 0.20
474 102 0.13
475 197 0.25
476 6 0.01
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.32
Consensus pattern (464 bp):
TTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACCAAAATCCATGTTTATCTTATTTAGG
CATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCATGCGAAACTAAAGCATCAAT
ATGATATCCTAATGAGAAGACTATGATTATGGTGCCTAATCCTGAAAAGAATGGGATTGTATGAC
TATTCATGTTTATCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATATGAAAGAAAAGCTTT
TCTTGCGACACCAAAGCATTAATGTCATGTATCCTAATGAGGAAATGTGTTTTGCTTCCCAATCT
TGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTAGGGATGAACTTTGATTTTAA
GGAAAATAGGGCAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAG
GAAAATATG
Found at i:1975565 original size:352 final size:349
Alignment explanation
Indices: 1974896--1975601 Score: 868
Period size: 351 Copynumber: 2.0 Consensus size: 349
1974886 AGACTTTACA
* *
1974896 AAAATTGGTGGGAAAAAACCCTTTCATGCGAAACTAAAGCACAAAATGATGTATCCTAATGAGAA
1 AAAATTGGTGGGAAAAAACCCTTTCATGCAAAACCAAAGCACAAAATGATGTATCCTAATGAGAA
* * * * * *
1974961 GACTGTGTTTATGGTCCCTAATCCTGAAAAGAATGGAGATTGTATGAGTATTCATGTTTATCGAA
66 GACTATCTTTATGGTCCCTAATCCTGAAAAGAACGGAGATTATATGAGTATTCATGTCTATCAAA
* * * * *
1975026 TTTAAGAGATAAACTTTGATTCTATCAAAAACTATGTAAAGAAAAGCATTTTTTGCGACATCAAA
131 TTTAAGAGACAAACTTTGATACTATCAAAAAATATGGAAAGAAAAGCATTTTTTGCGACACCAAA
** * * * * * * * *
1975091 GTTTTAATATCATGTACCTTATTGAAGGGAATGTGTTTTGGCATCCAATCTTGAAAAGAATAGAG
196 GCATCAACAACATATACCTTAATGAAGGAAATGTGCTTTGGCATCCAATCTTGAAAAGAATAGAA
* * *
1975156 ACTGTTATGAAAATCGATGTTTATCTTATTTAAGGGATGAACTTTGATTTCAAGGAAAATAGGGT
261 ACTATTATGAAAATCGATGCTTATCTTATTTAAGGGATAAACTTTGATTTCAAGGAAAATAGGG-
1975221 C-AA-GAAAGGATTTCCATGCAAAAG
325 CAAAGGAAA-GATTTCCATGCAAAAG
* * ** *
1975245 AAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGTGTCAATATGATGTATCCTAATGAGA
1 AAAATTGGTGGGAAAAAACCCTTTCATGCAAAACCAAAG-CACAAAATGATGTATCCTAATGAGA
* * * *
1975310 AGACTATCTTTATGGTGCCTAATCCTGAAAAGAACGGGGATTAATGTGAGTATTCATGTCTGTCA
65 AGACTATCTTTATGGTCCCTAATCCTGAAAAGAACGGAGATT-ATATGAGTATTCATGTCTATCA
*
1975375 AATTTAAGAGACAAACTTTGATACTAT-AAAAAATAGTGGAAAGAAAAG-GTTTTCTTGC-AGCA
129 AATTTAAGAGACAAACTTTGATACTATCAAAAAATA-TGGAAAGAAAAGCATTTT-TTGCGA-CA
*
1975437 CCAAAGCATCAACAACATATATCC-TAATGAAGGAAATGTGCTTTGGCCTCCCAATCTTGAAAAG
191 CCAAAGCATCAACAACATATA-CCTTAATGAAGGAAATGTGCTTTGGCAT-CCAATCTTGAAAAG
* ** * *
1975501 AATGGAAACTATTATGCCAATCGATGCTTGTCTTATTTAAGGTATAAACTTTGACTTT-AAGGAA
254 AATAGAAACTATTATGAAAATCGATGCTTATCTTATTTAAGGGATAAACTTTGA-TTTCAAGGAA
***
1975565 AATAGGGCAAAGGAAAGATTTTTGTGCAAAAG
318 AATAGGGCAAAGGAAAGATTTCCATGCAAAAG
1975597 AAAAT
1 AAAAT
1975602 CATCAATATC
Statistics
Matches: 302, Mismatches: 45, Indels: 17
0.83 0.12 0.05
Matches are distributed among these distances:
349 35 0.12
350 71 0.24
351 95 0.31
352 94 0.31
353 7 0.02
ACGTcount: A:0.38, C:0.13, G:0.19, T:0.30
Consensus pattern (349 bp):
AAAATTGGTGGGAAAAAACCCTTTCATGCAAAACCAAAGCACAAAATGATGTATCCTAATGAGAA
GACTATCTTTATGGTCCCTAATCCTGAAAAGAACGGAGATTATATGAGTATTCATGTCTATCAAA
TTTAAGAGACAAACTTTGATACTATCAAAAAATATGGAAAGAAAAGCATTTTTTGCGACACCAAA
GCATCAACAACATATACCTTAATGAAGGAAATGTGCTTTGGCATCCAATCTTGAAAAGAATAGAA
ACTATTATGAAAATCGATGCTTATCTTATTTAAGGGATAAACTTTGATTTCAAGGAAAATAGGGC
AAAGGAAAGATTTCCATGCAAAAG
Found at i:1975569 original size:159 final size:157
Alignment explanation
Indices: 1975404--1976116 Score: 444
Period size: 159 Copynumber: 4.5 Consensus size: 157
1975394 GATACTATAA
*
1975404 AAAATAGTGGAAAGAAAAGGTTTTCTTGCAGCACCAAAGCATCAACAACATATATCCTAATGAAG
1 AAAATAG-GGAAAGAAAAGGTTTTCTTGCAGAACCAAAGCATCAACAACATATATCCTAATG-AG
*
1975469 GAAATGTGCTT-TGGCCTCCCAATCTTGAAAAGAATGGAAACTATTATGCCAATCGATGCTTGTC
64 GAAATGTGCTTATGGCCTCCCAATCTTGAAAAGAATGGAGACTATTATG-CAATCGATGCTTGTC
1975533 TTATTTAAGGTATAAACTTTGACTTTAAGG
128 TTATTTAAGGTATAAACTTTGACTTTAAGG
* * * ** * * * *
1975563 AAAATAGGGCAAAGGAAAGATTTT-TGTGCAAAAGAAAATCATCAATATCATTTATCCTAATGAG
1 AAAATAGGG-AAAGAAAAGGTTTTCT-TGCAGAACCAAAGCATCAACAACATATATCCTAATGAG
* * *** * * * *
1975627 GAGAACGTGTTTATAGTGCCT---AATCACAAAAAGAATGGAGA-TCCTTACTAG-AATCCACGT
64 GA-AATGTGCTTAT-G-GCCTCCCAATCTTGAAAAGAATGGAGACT-ATTA-T-GCAATCGATGC
* * * * * * * *
1975687 TTATCTCATCTGAGGCACAAACTTAGAC-TTAATG
123 TTGTCTTATTTAAGGTATAAACTTTGACTTTAAGG
* ** * * * ** *
1975721 AAAATTGGTGAGAAG-AAAGCCTTTCTTG-TGAAACAAATGCATCAATATGATGTATCCTAATGA
1 AAAATAGG-GA-AAGAAAAGGTTTTCTTGCAGAACCAAA-GCATCAACAACATATATCCTAATGA
* * * * * * *
1975784 -GAAGACTATGTTTATGG--TGCCTAATCTTGAAAAGAATGGGGATTAGTGTGA-GTATTC-ATG
63 GGAA-A-TGTGCTTATGGCCT-CCCAATCTTGAAAAGAATGGAGACTA-T-T-ATGCAATCGATG
** * *
1975844 -TCTGTCAAATTTAAGAG-ATAAACTTTGATACTATCA--
122 CT-TGTCTTATTTAAG-GTATAAACTTTG--ACTTTAAGG
* *
1975880 AAAATGGTGGAAAGAAAAGGTTTTCTTGCAGCACCAAAGCATCAACAACATATATCCTAATGAAG
1 AAAATAG-GGAAAGAAAAGGTTTTCTTGCAGAACCAAAGCATCAACAACATATATCCTAATG-AG
* *
1975945 GAAATGTGCTT-TGGCTTCCCAATCTTGAAAAGAATGGAGACTATTACGACAATCGATGCTTGTC
64 GAAATGTGCTTATGGCCTCCCAATCTTGAAAAGAATGGAGACTATTATG-CAATCGATGCTTGTC
1976009 TTATTTAAGGTATAAACTTTGACTTTAAGG
128 TTATTTAAGGTATAAACTTTGACTTTAAGG
* * ** * * * *
1976039 AAAATAGGGCAAAGGAAAA-ATTTT-TGTGCAAAAGAAAATCATCAATATCATTTATCCTAATGA
1 AAAATAGGG-AAA-GAAAAGGTTTTCT-TGCAGAACCAAAGCATCAACAACATATATCCTAATGA
*
1976102 GGAGAATGTGTTTAT
63 GGA-AATGTGCTTAT
1976117 AGTGCTTAAT
Statistics
Matches: 418, Mismatches: 88, Indels: 95
0.70 0.15 0.16
Matches are distributed among these distances:
154 1 0.00
156 3 0.01
157 17 0.04
158 112 0.27
159 251 0.60
160 22 0.05
161 8 0.02
162 4 0.01
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.29
Consensus pattern (157 bp):
AAAATAGGGAAAGAAAAGGTTTTCTTGCAGAACCAAAGCATCAACAACATATATCCTAATGAGGA
AATGTGCTTATGGCCTCCCAATCTTGAAAAGAATGGAGACTATTATGCAATCGATGCTTGTCTTA
TTTAAGGTATAAACTTTGACTTTAAGG
Found at i:1975804 original size:158 final size:158
Alignment explanation
Indices: 1975598--1976284 Score: 474
Period size: 159 Copynumber: 4.3 Consensus size: 158
1975588 GTGCAAAAGA
* *
1975598 AAAT-CATCAATATCATTTATCCTAATGAGGAGAAC-GTGTTTATAGTGCCTAATCACAAAAAGA
1 AAATGCATCAATATCATGTATCCTAATGAGAAG-ACTGTGTTTATAGTGCCTAATCACAAAAAGA
* * * *
1975661 ATGGAGATCCTTACTAGAATCCACGTTTATCTCATCTGAGGCACAAACTTAGACTTAATGAAAAT
65 ATGGAGATCATTACTAGAATCCATGTTTATCTCATTTAAGGCACAAACTTAGACTTAATGAAAAT
1975726 TGGTGAGAAGAAAGCCTTTCTTGTGAAAC
130 TGGTGAGAAGAAAGCCTTTCTTGTGAAAC
* * * ***
1975755 AAATGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAA
1 AAATGCATCAATATCATGTATCCTAATGAGAAGACTGTGTTTATAGTGCCTAATCACAAAAAGAA
* * * * * * * * ** * * *
1975820 TGGGGATTAGT-GTGAGTATTCATGTCTGTCAAATTTAAGAG-ATAAACTTTGA--TACTATCAA
66 TGGAGATCATTACT-AGAATCCATGTTTATCTCATTTAAG-GCACAAACTTAGACTTA--ATGAA
* ** * * *
1975881 AAATGGTG-GAAAGAAAAGGTTTTCTTGCAGCACC
127 AATTGGTGAG-AAG-AAAGCCTTTCTTG-TGAAAC
* * * * * * * ***
1975915 AAA-GCATCAACAACATATATCCTAATGAAGGAA-A-TGTGCTT-TGGCTTCCCAATCTTGAAAA
1 AAATGCATCAATATCATGTATCCTAATG-A-GAAGACTGTGTTTATAG-TGCCTAATCACAAAAA
* * * * * * * * * *
1975976 GAATGGAGA-CTATTACGACAATCGATGCTTGTCTTATTTAAGGTATAAACTTTGACTTTAAGGA
63 GAATGGAGATC-ATTACTAGAATCCATGTTTATCTCATTTAAGGCACAAACTTAGAC-TTAATGA
* ** *
1976040 AAATAGG-GCA-AAGGAAA-AATTT-TTGTGCAAAAGA
126 AAATTGGTG-AGAA-GAAAGCCTTTCTTGTG--AAA-C
* * * *
1976074 AAAT-CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCTTAATCACAAAAAGAA
1 AAATGCATCAATATCATGTATCCTAATGAGAAGACTGTGTTTATAGTGCCTAATCACAAAAAGAA
*
1976138 TGGAGATC-TTACTAGAATCCATGTTTATCTCATTTGAGGCACAAACTTAGACTTAATGAAAATT
66 TGGAGATCATTACTAGAATCCATGTTTATCTCATTTAAGGCACAAACTTAGACTTAATGAAAATT
**
1976202 GGTGAGAAGAAAGCCTTTCTTGCAAAAC
131 GGTGAGAAGAAAGCCTTTCTTGTGAAAC
* * * * * *
1976230 AAATGTATCAATATGATGTGTCCTAATGAGAAAACTATGTTTATTGTGCCTAATC
1 AAATGCATCAATATCATGTATCCTAATGAGAAGACTGTGTTTATAGTGCCTAATC
1976285 TTTAAAAAAA
Statistics
Matches: 395, Mismatches: 101, Indels: 68
0.70 0.18 0.12
Matches are distributed among these distances:
156 7 0.02
157 73 0.18
158 145 0.37
159 146 0.37
160 19 0.05
161 3 0.01
162 2 0.01
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.30
Consensus pattern (158 bp):
AAATGCATCAATATCATGTATCCTAATGAGAAGACTGTGTTTATAGTGCCTAATCACAAAAAGAA
TGGAGATCATTACTAGAATCCATGTTTATCTCATTTAAGGCACAAACTTAGACTTAATGAAAATT
GGTGAGAAGAAAGCCTTTCTTGTGAAAC
Found at i:1976135 original size:159 final size:159
Alignment explanation
Indices: 1975496--1976612 Score: 488
Period size: 158 Copynumber: 7.1 Consensus size: 159
1975486 CCCAATCTTG
* * *
1975496 AAAAGAATGGAAACTATTATGCCAATCGATGCTTGTCTTATTTAAGGTATAAACTTTGACTTTAA
1 AAAAGAATGGAGACTATTACGACAATCGATGCTTGTCTTATTTAAGGTATAAACTTTGACTTTAA
*
1975561 GGAAAATAGG-GCAAAGGAAAGATTTTTGTGCAAAAGAAAATCATCAATATCATTTATCCTAATG
66 GGAAAATAGGTGCAAA-GAAAAATTTTTGTGCAAAAGAAAATCATCAATATCATTTATCCTAATG
*
1975625 AGGAGAACGTGTTTATAGTGCCTAATCACA
130 AGGAGAATGTGTTTATAGTGCCTAATCACA
* * * * * * * * * * * * *
1975655 AAAAGAATGGAGA-TCCTTACTAGAATCCACGTTTATCTCATCTGAGGCACAAACTTAGAC-TTA
1 AAAAGAATGGAGACT-ATTACGACAATCGATGCTTGTCTTATTTAAGGTATAAACTTTGACTTTA
* * ** * * *
1975718 ATGAAAATTGGTG-AGAAGAAAGCCTTTCTTGTG--AAA-CAAATGCATCAATATGATGTATCCT
65 AGGAAAATAGGTGCA-AAGAAA-AATTT-TTGTGCAAAAGAAAAT-CATCAATATCATTTATCCT
* * * * ***
1975779 AATGAGAAGACTATGTTTATGGTGCCTAATCTTG
126 AATGAGGAGAATGTGTTTATAGTGCCTAATCACA
* * * ** * * **
1975813 AAAAGAATGGGGATTAGTGTGAGTATTC-ATG-TCTGTCAAATTTAAGAG-ATAAACTTTGATAC
1 AAAAGAATGGAGACTATTACGA-CAATCGATGCT-TGTCTTATTTAAG-GTATAAACTTTG--AC
* * * * ** ** * * * *
1975875 TATCA--AAAAT-GGTGGAAAGAAAAGGTTTTCT-TGCAGCACCAAAGCATCAACAACATATATC
61 TTTAAGGAAAATAGGTGCAAAGAAAA-ATTTT-TGTGCAAAAGAAAATCATCAATATCATTTATC
* * * * ***
1975936 CTAATGAAGGA-AATGTGCTT-TGGCTTCCCAATCTTG
124 CTAATG-AGGAGAATGTGTTTATAG-TGCCTAATCACA
1975972 AAAAGAATGGAGACTATTACGACAATCGATGCTTGTCTTATTTAAGGTATAAACTTTGACTTTAA
1 AAAAGAATGGAGACTATTACGACAATCGATGCTTGTCTTATTTAAGGTATAAACTTTGACTTTAA
1976037 GGAAAATAGG-GCAAAGGAAAAATTTTTGTGCAAAAGAAAATCATCAATATCATTTATCCTAATG
66 GGAAAATAGGTGCAAA-GAAAAATTTTTGTGCAAAAGAAAATCATCAATATCATTTATCCTAATG
*
1976101 AGGAGAATGTGTTTATAGTGCTTAATCACA
130 AGGAGAATGTGTTTATAGTGCCTAATCACA
* * * * * * * * * * *
1976131 AAAAGAATGGAGA-TCTTACTAGAATCCATGTTTATCTCATTTGAGGCACAAACTTAGAC-TTAA
1 AAAAGAATGGAGACTATTACGACAATCGATGCTTGTCTTATTTAAGGTATAAACTTTGACTTTAA
* * ** * * * * * *
1976194 TGAAAATTGGTG-AGAAGAAAGCCTTTCT-TGCAAAA-CAAATGTATCAATATGATGTGTCCTAA
66 GGAAAATAGGTGCA-AAGAAA-AATTTTTGTGCAAAAGAAAAT-CATCAATATCATTTATCCTAA
* * * **
1976256 TGA-GAAAACTATGTTTATTGTGCCTAATCTTTA
128 TGAGGAGAA-TGTGTTTATAGTGCCTAATC-ACA
* * * * * * * *
1976289 AAAA-AATGG-GAATTAGTATGATTATTCG-TACTTGTTTTATTTAAGAG-ACT-AACTTTGGCT
1 AAAAGAATGGAG-ACTATTACGA-CAATCGATGCTTGTCTTATTTAAG-GTA-TAAACTTTGACT
* *** * ** * * * * * **
1976349 CTATCAAAAAT-GGTGGAAA-AAATGCTTTTCTTGTG-ACACG-AAAGCATTAATGTCATGAAT-
62 TTAAGGAAAATAGGTGCAAAGAAA--AATTT-TTGTGCAAAAGAAAATCATCAATATCATTTATC
* * * ***
1976409 CTAAATGAAGG-GAATGTGTTT-TGGCTTCCCAATCTTG
124 CT-AATG-AGGAGAATGTGTTTATAG-TGCCTAATCACA
* * * * * * *
1976446 AAAAGAATGGAGACTGTTGCGAGAATCGATACTTGTCTTATTTAAGGGATAAGCTTTGATTTTAA
1 AAAAGAATGGAGACTATTACGACAATCGATGCTTGTCTTATTTAAGGTATAAACTTTGACTTTAA
* *** * * ** * *
1976511 GGAAAATAGG-GTAAAGAAAAGATTTCCATGGAAAAGAAAATCCTCCTTATTATTTATCCTAATT
66 GGAAAATAGGTGCAAAGAAAA-ATTTTTGTGCAAAAGAAAATCATCAATATCATTTATCCTAATG
*
1976575 AGGAGAATGTGTTTATAGTGCCTAATTACA
130 AGGAGAATGTGTTTATAGTGCCTAATCACA
*
1976605 AAATGAAT
1 AAAAGAAT
1976613 TACAATCATT
Statistics
Matches: 695, Mismatches: 198, Indels: 130
0.68 0.19 0.13
Matches are distributed among these distances:
156 9 0.01
157 101 0.15
158 284 0.41
159 268 0.39
160 31 0.04
161 2 0.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (159 bp):
AAAAGAATGGAGACTATTACGACAATCGATGCTTGTCTTATTTAAGGTATAAACTTTGACTTTAA
GGAAAATAGGTGCAAAGAAAAATTTTTGTGCAAAAGAAAATCATCAATATCATTTATCCTAATGA
GGAGAATGTGTTTATAGTGCCTAATCACA
Found at i:1976650 original size:475 final size:475
Alignment explanation
Indices: 1975245--1981688 Score: 6797
Period size: 475 Copynumber: 13.7 Consensus size: 475
1975235 CATGCAAAAG
* **
1975245 AAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGTGTCAATATGATGTATCCTAATGAGA
1 AAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAA-CAAAGCATCAATATGATGTATCCTAATGAGA
* * * * * *
1975310 AGACTATCTTTATGGTGCCTAATCCTGAAAAGAACGGGGATTAATGTGAGTATTCATGTCTGTCA
65 AGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCA
* * * ** *
1975375 AATTTAAGAGACAAACTTTGATACTATAAAAAATAGTGGAAAGAAAAGGTTTTCTTGC-AGCACC
130 TATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGA-CACC
*** * * * *
1975439 AAAGCATCAACAACATATATCCTAATGAAGGAAATGTGCTTTGGCCTCCCAATCTTGAAAAGAAT
194 AAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAAT
* * * ** * * *
1975504 GGAAACTATTATGCCAATCGATGCTTGTCTTATTTAAGGTATAAACTTTGACTTTAAGGAAAATA
259 GGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATA
* *** *
1975569 GGGCAAAGGAAAGATTTTTGTGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAACG
324 GGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATG
* * * * *
1975634 TGTTTATAGTGCCTAATCACAAAAAGAATGGAGATCCTTACTAGAATCCACGTTTATCTCATCTG
389 TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCTCATTTG
** * **
1975699 AGGCACAAACTTAGACTTAATG
454 AGGCATGAACTTAGACTTTACA
* **
1975721 AAAATTGGTGAGAAGAAAGCCTTTCTTGTGAAACAAATGCATCAATATGATGTATCCTAATGAGA
1 AAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACAAA-GCATCAATATGATGTATCCTAATGAGA
* *
1975786 AGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTGTGAGTATTCATGTCTGTCA
65 AGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCA
* * * * *
1975851 AATTTAAGAGATAAACTTTGATACTATCAAAAATGGTGGAAAGAAAAGGTTTTCTTGC-AGCACC
130 TATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGA-CACC
*** * * *
1975915 AAAGCATCAACAACATATATCCTAATGAAGGAAATGTGCTTTGGCTTCCCAATCTTGAAAAGAAT
194 AAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAAT
* * * * *
1975980 GGAGACTATTACGACAATCGATGCTTGTCTTATTTAAGGTATAAACTTTGACTTTAAGGAAAATA
259 GGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATA
***
1976045 GGGCAAAGGAAAA-ATTTTTGTGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
324 GGGCAAA-GAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
* * *
1976109 GTGTTTATAGTGCTTAATCACAAAAAGAATGGAGATC-TTACTAGAATCCATGTTTATCTCATTT
388 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCTCATTT
** * **
1976173 GAGGCACAAACTTAGACTTAATG
453 GAGGCATGAACTTAGACTTTACA
* * *
1976196 AAAATTGGTGAGAAGAAAGCCTTTCTTGCAAAACAAATGTATCAATATGATGTGTCCTAATGAGA
1 AAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACAAA-GCATCAATATGATGTATCCTAATGAGA
* * * * * * * ** **
1976261 AAACTATGTTTATTGTGCCTAATCTTTAAAAAAATGGGAATTAGTATGATTATTCGTACTTGTTT
65 AGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCA
* ** * * * *
1976326 TATTTAAGAGACTAACTTTGGCTCTATCAAAAATGGTGGAAA-AAATGCTTTTCTTGTGACACGA
130 TATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCA
* *
1976390 AAGCATTAATGTCATGAAT-CTAAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAAT
195 AAGCATCAATGTCATGTATCCT-AATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAAT
* *
1976454 GGAGACTGTTGCGAGAATCGATACTTGTCTTATTTAAGGGAT-AAGCTTTGATTTTAAGGAAAAT
259 GGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAA-CTTTGATTTTAAGGAAAAT
* * * ** * *
1976518 AGGGTAAAGAAAAGATTTCCATGGAAAAGAAAATCCTCCTTATTATTTATCCTAATTAGGAGAAT
323 AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
* * * * * *
1976583 GTGTTTATAGTGCCTAATTACAAAATGAATTACA-ATCATTACTAAAATCTATGTTTGTCTTATT
388 GTGTTTATAGTGCCTAATCACAAAATGAATGA-AGATCATTACTAGAATCCATGTTTATCTCATT
1976647 TGAGGCATGAACTTAGACTTTACA
452 TGAGGCATGAACTTAGACTTTACA
1976671 AAAATTAGG-GGGAA-AAGAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCCTAATGA
1 AAAATT-GGTGGGAAGAA-AGCCTTTCTTGCAAAA-CAAAGCATCAATATGATGTATCCTAATGA
* * * * *** *
1976734 GAAGACTATATTTATGGTGTCTAATCTTTAAAAGAATGGGGATTAGAATGACCCTTCATGTATGT
63 GAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGT
* * *
1976799 CTTATTTAAGAGA-AAA-TATTGACTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGATA
128 CATATTTAAGAGACAAACT-TTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACA
* * * * * * *
1976862 CCAAAGCATCAATGTCATGTATCCTATTAAAAGGAATATGTCTTGGCATCTCAATCTTGAAACA-
192 CCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAA-AG
* *
1976926 AATAGAGACTGTTACGAGAATCGATGATTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAA
256 AATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAA
* * ** *
1976991 ATAGGGCAAAGAAAAGATTTCCATACTAAAGAAAATCATCTCTATCATTTATCCTAACGAGGAGA
321 ATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA
* * * *
1977056 ATGTATTTATAGTGCCTAACCA-ATAAATGAATGAAGGTCATTACTAGAATCCATGTTTGTCTCA
386 ATGTGTTTATAGTGCCTAATCACA-AAATGAATGAAGATCATTACTAGAATCCATGTTTATCTCA
* * *
1977120 TTTAAGGCATGAACGTAGAATTTACA
450 TTTGAGGCATGAACTTAGACTTTACA
* * * * * ** * *
1977146 AAAATTGGTGGGAA-AAATGCTTTTCATT-CGAAGCTAAAACGTCAATATCCTATATCCTAAAGA
1 AAAATTGGTGGGAAGAAA-GCCTTTC-TTGCAAAAC-AAAGCATCAATATGATGTATCCTAATGA
* *** *
1977209 GAAGACTATGATTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACCCTTCATGTATGT
63 GAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGT
* * * **
1977274 CATATTTGAGAGAAAAACATTT-ATTCTATAAAAAACGGTGGAAAGAAAAGCTTTTCTTGTAACA
128 CATATTTAAGAGACAAAC-TTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACA
* * *
1977338 CCAAAGCATCACA-GTCATGTATCCTACA-GAAGGGATTGTATCTTGGCTTCCCAATCTTGAAAA
192 CCAAAGCATCA-ATGTCATGTATCCTA-ATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAA
* * * * * * *
1977401 GAATGCATACTATTATGAGAATCGATGCTTGTCTTTTTTATGGGATGAACTTTG-TTTTATGGAA
255 GAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAA
* * *
1977465 AATAGGGCAAAGAAAAGATTTCTATGCAAAAGAAAATCATCAATATCAATTATCCTAATAAGGAG
320 AATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAG
* * * * * *
1977530 AATGTGTTTATAATGCCTAATCTCGAAATGAATGAAGATCATTACCAAAAACCATGTTTATCTCA
385 AATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCTCA
* *
1977595 TTTGAGGCACGAACTTAGATTTTACA
450 TTTGAGGCATGAACTTAGACTTTACA
* * * *
1977621 AAAGTTGGTGAGAAGAAAGCCTTTCTTGCGTAACCAAAGCATCAATATCG-TGTATCCTAATGAG
1 AAAATTGGTGGGAAGAAAGCCTTTCTTGC-AAAACAAAGCATCAATAT-GATGTATCCTAATGAG
* * * * ** *
1977685 AAAACTATGTTCATGGTGTCAAATCCAGAAAAG-ATGGGGGATTTGTATGACG-ATTCATGTTTG
64 AAGACTATGTTTATGGTGCCTAATCTTGAAAAGAAT-GGGGATTAGTATGA-GTATTCATGTTTG
* * * * **
1977748 TTATATTTAAGTGACAAAC-TTCATTCTACCAAAAA-AATGGAAAGAAAAGCTTTTCTTGCGACA
127 TCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACA
* * * * * * * **
1977811 -CAAACGCAGCAAAGTCATGTATCCGAAAGAGGGGATTATGTTTTAACTTCCCAATCTTGAAAAG
192 CCAAA-GCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAG
* * * * * *** * * *
1977875 AATGAAAAGTGTTACGTGAATCGATGCTTATCTTATTTAACACATGAACTTCGATTTAAAGAAAA
256 AATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAA
** * * * *
1977940 ATAGGGCAAAGAAAAGATTTCTGTGCAAAAGATAATTATCATTATCATTTATCTTAATGAGGAGA
321 ATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA
* * * *
1978005 ATGCGTTTATAGTGCCTAATCACAAAGTGAGTGAAGATCATTACCAGAATCCATGTTTATCTCAT
386 ATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCTCAT
* * * *
1978070 TTAAGGCACGAATTTAGATTTTACA
451 TTGAGGCATGAACTTAGACTTTACA
* * * * * *
1978095 AAAATTGGTGGGAAGAAAGCCTTTCTTTCGTAACCAAAGCGTCAATATCATGTACCCTAATGAGA
1 AAAATTGGTGGGAAGAAAGCCTTTCTTGC-AAAACAAAGCATCAATATGATGTATCCTAATGAGA
* * ** * * *
1978160 AGACTATGTTCATGGTGCCAAATCCAGAAAAGATTGGGGATTTGTTTGACG-ATTCATGTTTGTC
65 AGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGA-GTATTCATGTTTGTC
*
1978224 ATATTTAAGAGACAAACTTTGATTCTATCAAAAA--ATGGAAAGAAAAGCTTTTCTTGCGACACC
129 ATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACC
** * * *
1978287 AAAGCATCAATGTCATGTGCCCTAATGAAGGGAATGTATTTTGGATTCCTAATCTTGAAAAGAAT
194 AAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAAT
*
1978352 GAAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATA
259 GGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATA
* * * * * *
1978417 GGGCAAAGAAAAGATTTTCGTGTAAAGGATAATCATCAATATCATTTATCCTAATGAAGAGAATG
324 GGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATG
* * * * *
1978482 TGTTTATGGTGCCTAATCACAAAATGAATGAAGATTATTACCAAAATCCATGTTTATCTTATTTG
389 TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCTCATTTG
*
1978547 AAGCATGAA-TATAGACTTTACA
454 AGGCATGAACT-TAGACTTTACA
* * * *
1978569 AAAATTGGTGGGAAAAAACCCTTTCATGCGAAACTAAAGCAT-AATATGATGTATCCTAATGAGA
1 AAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAAC-AAAGCATCAATATGATGTATCCTAATGAGA
* * * *
1978633 AGACTGTGTTTATGGT-CTCTAATCCTGAAAAGAACGGAGATT-GTATGAGTATTCATGTTTGTC
65 AGACTATGTTTATGGTGC-CTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTC
* * * ** * *
1978696 AAATTTAAGAGACAGACTTTTATTCTATCAAAAACTATGTAAAGAAATGCTTTTCTTGCGACACC
129 ATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACC
* * * *
1978761 GAAGCATTAATGTCCA-GTA-CCTTAATGAAGGGAATGTGCTTTGGCATCCCAATCTTGAAAAGA
194 AAAGCATCAATGT-CATGTATCC-TAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGA
* *
1978824 ATGGAGACTGTTACAAGAATCGATACTTGTCTTATTTAA-GG-T---C----------------A
257 ATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAA
* * * *
1978868 -A---C----AAAAGATTTCCATGCAAAAGAAAATTATTAGTTTCATTTATCCTAATGAGGAGAA
322 TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
* * *
1978925 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAAAATCCATTTTTCTCTCATT
387 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCTCATT
* *
1978990 TTAGACATGAACTTAGACTTTACA
452 TGAGGCATGAACTTAGACTTTACA
* * * * * * *
1979014 AAAATTGGTGGGAAAAAAACCTTTTTTGTGAAACCAAAGTATCAATATGATGTATCCTAATGAGC
1 AAAATTGGTGGGAAGAAAGCCTTTCTTG-CAAAACAAAGCATCAATATGATGTATCCTAATGAGA
* * * * * *
1979079 AGACTACGTTTATGGTGTCTAATCTTGAAAAAAACGGGGATTAGTGTGAGTATTCTTGTTTGTCA
65 AGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCA
* *
1979144 AATTTAAGAGACAAACTTTGATACTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCA
130 TATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCA
*** * * * *
1979209 AAGCATCAACAACATATATCCTAATGAATGAAATGTGCTTTGGCTTCCCAATCTTGAAAAGAATG
195 AAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATG
* * * * * * * *
1979274 GAGACTATTACGACAATCGATGCTTGTCTTATTTAAGGTATAAACTTTCACTTGAAGAAAAATAG
260 GAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAG
*
1979339 GGCAAAGGAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
325 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
* * * *
1979404 GTTTCTAGTGCCTAATCACAAAAAGAGTGAAGATCCTTACTAGAATCCATGTTTATCTCATTTGA
390 GTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCTCATTTGA
* * * **
1979469 GACATAAACTTAGACTTAAGG
455 GGCATGAACTTAGACTTTACA
* * *
1979490 AAAATTGGTGAGAAGAAAGCCTTTGTTGCGAAACAAATGCATCAATATGATGTATCCTAATGAG-
1 AAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACAAA-GCATCAATATGATGTATCCTAATGAGA
* * * * * *
1979554 AGAACTATGTTTTTGGTGCCTAATCTTCAAAAGAATGGGAATTAGTATGATTATTCTTGTTTGTT
65 AG-ACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTC
* * *
1979619 TTATTTAAGAGACTAACTTTGATTCTATCAAAAACGGT-GAAA-AAAAGCTTTTCTTGTGACACC
129 ATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACC
* * * * *
1979682 AAAGTATTAATGTCTTGAATCTTAATGAAGGGAATGTGTTTTGG-TTCCCAATCTTGAAAAGAAT
194 AAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAAT
** ** * * * * *
1979746 ATAGACTGTTTTGGGAATCGATACTTCTCTTATTTAAGGGATGAACTTTGATTCTAAAGAAAATA
259 GGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATA
** * * * * * * *
1979811 GGGTGAAGGAAAGATTTTCATGGAAAAGAAAATCATCAATATCAATCATCCTAAAGAGGAGAAAG
324 GGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATG
* * * * * * * *
1979876 TATTCAAAGTGCGTAATCACAAAATGAATGAAGATCATTATTTGGATCCATGTTTGTCTCATTTG
389 TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCTCATTTG
* *
1979941 AGGAAAGAACTTAGACTTTAC-
454 AGGCATGAACTTAGACTTTACA
*** *
1979962 --AA--------AA-AAAGCCTTTCTTGCGAAGTGAAAACATCAATATGATGTATCCTAATGAGA
1 AAAATTGGTGGGAAGAAAGCCTTTCTTGC-AAAACAAAGCATCAATATGATGTATCCTAATGAG-
* * * ** * * *
1980016 AAGACTATGTTTATAGTGCCTAATCCTGAAAATAACCGGGATTTGTATGAGTTTTCATGGTTGTC
64 AAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTC
* * * * * *
1980081 GTATTTAAG-GAACAAACTTTGATTCTATTAAAAATGGTGGAAAGAAAAGCTTTGCTTACGACAT
129 ATATTTAAGAG-ACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACAC
* * *
1980145 TAAAGCATCAATGTCAAGTATCCCAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAA
193 CAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAA
* * * * *
1980210 TCGAGAGTGTTACGAGAATCGATGCTTGTCTTATTTAAAGGATGAACTTTAATTTAAAGGAAAAT
258 TGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT
* * *** * * * **
1980275 CGGGCAAAGAAAATATTTTTGTGCAAAAGATAATCATCAATATCTTTTATCCTAGTTTGGAGAAT
323 AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
*
1980340 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACCT-GAATCCATGTTTATCTCATT
388 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA-CTAGAATCCATGTTTATCTCATT
*
1980404 TGAGGCATGAACTTATACTTTACA
452 TGAGGCATGAACTTAGACTTTACA
* *
1980428 AAAATTTGTGGGAAGAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCG-TGTATCCTAATGAG
1 AAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAA-CAAAGCATCAATAT-GATGTATCCTAATGAG
* * ** * * * * *
1980492 AAAACTATGTTCATGGTGCCTAATCCAGAAAAGATTGGGGATTTGTTTGACGT-GTCGTGTTTGT
64 AAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGA-GTATTCATGTTTGT
* * * *** * * *
1980556 CTTATTTAAGAGACAAACTTTGTTTTTATCAAAAACAACGAAAAGAAAAGCTTTTCTTGCAACCC
128 CATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACAC
* * * * * * *
1980621 CAAATCTTTAATGTCATTTATCCTAATAAAGGGAATGTGTTTTAGCTTCTCAATCTTG-AAAGAA
193 CAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAA
* * * * * * *
1980685 TGGAGACTGGTATGTGAATCGATGCTTGT-TTTTTTATTGGG-TGAATTTTGATTTTAAGGGAAA
258 TGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTA-AGGGATGAACTTTGATTTTAAGGAAAA
** * * * * *
1980748 TAGGGTGAAGAAAAGTTTTCCAT-CAAAAGAAAATCATCAGTATTATTTATCCTAATAAGAAGAA
322 TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
** * * * * * * *
1980812 TGCATTTATAGTGTCTCATTACAAAATGAGTGAAGATCATTACCAAAATCTATGTTTATCTCATT
387 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCTCATT
**
1980877 TGAGAAATGAACTTAGACTTTACA
452 TGAGGCATGAACTTAGACTTTACA
* * * *
1980901 AAAATTGGTGGGAAGAAAGCTTTTCTTGGGAAACCAAAGCATCAATATCGCA--TATCCTAATTA
1 AAAATTGGTGGGAAGAAAGCCTTTCTT-GCAAAACAAAGCATCAATAT-G-ATGTATCCTAATGA
* * * *
1980964 GTAA-ACTACGTTTATGGTGCCTAATCCTT-AAAAGAATGGGGCTTAGTAT-A-TATCCATGTTC
63 G-AAGACTATGTTTATGGTGCCTAAT-CTTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTT
* * * *
1981025 GTCTTATTTAAGAGACAAACTTTTGATTCTATCAAAAACGATGGAAATAAAAGCTTTTCTTGCAA
126 GTCATATTTAAGAGACAAAC-TTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGA
* * *
1981090 CATCAAAGCATCAATGTCTTGTATCCTAATGAAAGGAATGTGTTTTGGCTTCCCAATCTTGAAAA
190 CACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAA
* * * * * * *
1981155 AAATGGAGATTAG-TATGAGAATCGGTGCTTGTCTTTTTTAAGGGATGAACATTAATTTTAAGGA
255 GAATGGAGACT-GTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGG-
* * * * * *
1981219 AAAAATAGTGCAAAGAAAAGGTTTTCATGCAAAAGAAAATCATCAATACCATTTATCCTATTAAG
318 -AAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAG
* * * * ***
1981284 GAGAATGTGTTTATAGTGCCTAATCTCTAAATGAATAAAGATCATTACTGGAATCCATGTTCGCC
382 GAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATC
** *
1981349 TCATTTGAGAAACGAACTTAGACTTTACA
447 TCATTTGAGGCATGAACTTAGACTTTACA
* * * * * *
1981378 AAAATTGATAGGAAAAAAAAACCTTTCTTGCAAAAC--CGCATCAATATGATGTATCCTAATAAG
1 AAAATTGGT-GG-GAAGAAAGCCTTTCTTGCAAAACAAAGCATCAATATGATGTATCCTAATGAG
* * **
1981441 AAGACTATGTTTATGGTGCCTAATCTTGAAAAGAACGGGGATTAGTGTGAGTATTCACATTTGTC
64 AAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTC
* * * * *
1981506 AAATTTAAGAG--AAACTTTGTTTCTATAAAAAACGGTTGAAAGAAAAGCTTTT-TTCGCAACAC
129 ATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTT-GCGACAC
** * ** * * * *
1981568 CAAAGCATCAATAACATATATCCTAATGAAAAGAGTGTATTTTGGCTTCCCACTCTTGAAACGAA
193 CAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAA
** * * * *
1981633 TTAAGACTATTATGACAATCGATGCTTATCTTATTTAAGGGATGAACTTTGATTTT
258 TGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT
1981689 TCCTATTGAG
Statistics
Matches: 5036, Mismatches: 792, Indels: 281
0.82 0.13 0.05
Matches are distributed among these distances:
445 154 0.03
446 62 0.01
447 160 0.03
448 3 0.00
449 2 0.00
452 2 0.00
453 1 0.00
461 39 0.01
462 86 0.02
463 6 0.00
464 53 0.01
465 193 0.04
466 1 0.00
468 3 0.00
469 2 0.00
470 3 0.00
471 26 0.01
472 148 0.03
473 604 0.12
474 1056 0.21
475 1181 0.23
476 1045 0.21
477 166 0.03
478 28 0.01
479 12 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.31
Consensus pattern (475 bp):
AAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACAAAGCATCAATATGATGTATCCTAATGAGAA
GACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCAT
ATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAA
AGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGG
AGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGG
GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG
TTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCTCATTTGAG
GCATGAACTTAGACTTTACA
Found at i:1978511 original size:159 final size:156
Alignment explanation
Indices: 1977870--1978545 Score: 377
Period size: 159 Copynumber: 4.3 Consensus size: 156
1977860 CCCAATCTTG
* * * * * *
1977870 AAAAGAATGAAAAGTGTTACGTGAATCGATGCTTATCTTATTTAACACATGAACTTCGATTTAAA
1 AAAAGAATGAAGA-TGTTACGAGAATCGATGCTTATCTTATTTAAGACACGAACTTTGATTTTAA
* ** ** * * * *
1977935 GAAAAATAGGGCAAAGAAAAGA-TTTCTGTGCAAAAGATAATTATCATTATCATTTATCTTAATG
65 G-AAAATAGGGCAAAGAAAAGATTTTCTGTGTAAACCA-AAGCATCAATATCATGTACCCTAATG
* * *
1977999 AGGAGAATGCGTTTATAGTGCCTAATCAC
128 AAGAGAATGTGTTTATGGTGCCTAATCAC
* * * * * * * *
1978028 AAAGTGAGTGAAGATCATTACCAGAATCCATGTTTATCTCATTTAAGGCACGAA-TTTAGATTTT
1 AAA-AGAATGAAGAT-GTTACGAGAATCGATGCTTATCTTATTTAAGACACGAACTTT-GATTTT
* ** ** * *
1978092 ACA-AAAATTGGTGGGAAG-AAAGCCTTTCTTTCGT-AACCAAAGCGTCAATATCATGTACCCTA
63 A-AGAAAATAGG-GCAAAGAAAAGATTTTCTGT-GTAAACCAAAGCATCAATATCATGTACCCTA
* * * * *
1978154 ATG-AGAAGACTATGTTCATGGTGCCAAATCCAG
125 ATGAAG-AGAATGTGTTTATGGTGCCTAAT-CAC
* ** * * * * * * * *
1978187 AAAAGATTGGGGATTTGTT-TGACGATTC-ATGTTTGTCATATTTAAGAGACAAACTTTGATTCT
1 AAAAGAATGAAGA--TGTTACGA-GAATCGATGCTTATCTTATTTAAGACACGAACTTTGATTTT
** * * * * * * *
1978250 ATCAAAAAATGG-AAAGAAAAGCTTTTCT-TGCGACACCAAAGCATCAATGTCATGTGCCCTAAT
63 AAGAAAATAGGGCAAAGAAAAGATTTTCTGTG-TAAACCAAAGCATCAATATCATGTACCCTAAT
* * * **
1978313 GAAGGGAATGTATTT-TGGATTCCTAATCTTG
127 GAAGAGAATGTGTTTATGG-TGCCTAATC-AC
* ** *
1978344 AAAAGAATGAAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAA
1 AAAAGAATGAAGA-TGTTACGAGAATCGATGCTTATCTTATTTAAGACACGAACTTTGATTTTAA
** * * *
1978409 GGAAAATAGGGCAAAGAAAAGATTTTC-GTGTAAAGGATAATCATCAATATCATTTATCCTAATG
65 -GAAAATAGGGCAAAGAAAAGATTTTCTGTGTAAACCA-AAGCATCAATATCATGTACCCTAATG
1978473 AAGAGAATGTGTTTATGGTGCCTAATCAC
128 AAGAGAATGTGTTTATGGTGCCTAATCAC
* * * * *
1978502 AAAATGAATGAAGATTATTACCAAAATCCATGTTTATCTTATTT
1 AAAA-GAATGAAGA-TGTTACGAGAATCGATGCTTATCTTATTT
1978546 GAAGCATGAA
Statistics
Matches: 381, Mismatches: 109, Indels: 55
0.70 0.20 0.10
Matches are distributed among these distances:
155 1 0.00
156 16 0.04
157 94 0.25
158 106 0.28
159 158 0.41
160 6 0.02
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (156 bp):
AAAAGAATGAAGATGTTACGAGAATCGATGCTTATCTTATTTAAGACACGAACTTTGATTTTAAG
AAAATAGGGCAAAGAAAAGATTTTCTGTGTAAACCAAAGCATCAATATCATGTACCCTAATGAAG
AGAATGTGTTTATGGTGCCTAATCAC
Found at i:1982730 original size:13 final size:13
Alignment explanation
Indices: 1982712--1982736 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1982702 AGATTGCACA
1982712 GTATCGATACATT
1 GTATCGATACATT
1982725 GTATCGATACAT
1 GTATCGATACAT
1982737 GACCAAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:1982749 original size:20 final size:21
Alignment explanation
Indices: 1982724--1982776 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
1982714 ATCGATACAT
*
1982724 TGTATCGATACATG-ACCA-AA
1 TGTATCGATACATGTA-AAGAA
*
1982744 TGTATCGATACTTGTAAAGAA
1 TGTATCGATACATGTAAAGAA
1982765 TGTATCGATACA
1 TGTATCGATACA
1982777 GGTCATTGGC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 14 0.50
21 14 0.50
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.30
Consensus pattern (21 bp):
TGTATCGATACATGTAAAGAA
Found at i:1982855 original size:13 final size:13
Alignment explanation
Indices: 1982837--1982862 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1982827 ACACACAATA
1982837 TGTATCGATACAT
1 TGTATCGATACAT
1982850 TGTATCGATACAT
1 TGTATCGATACAT
1982863 CCCAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1982878 original size:33 final size:32
Alignment explanation
Indices: 1982817--1982884 Score: 109
Period size: 33 Copynumber: 2.1 Consensus size: 32
1982807 CCTTAACTGT
*
1982817 TTGTATCGATACACACAATATGTATCGATACA
1 TTGTATCGATACACACAAAATGTATCGATACA
*
1982849 TTGTATCGATACATCCCAAAATGTATCGATACA
1 TTGTATCGATACA-CACAAAATGTATCGATACA
1982882 TTG
1 TTG
1982885 GCTTGTAACG
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
32 13 0.39
33 20 0.61
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.32
Consensus pattern (32 bp):
TTGTATCGATACACACAAAATGTATCGATACA
Found at i:1990904 original size:50 final size:50
Alignment explanation
Indices: 1990829--1991004 Score: 291
Period size: 50 Copynumber: 3.5 Consensus size: 50
1990819 TCTTTGTAAA
*
1990829 TAAATTTTATGATTAAGGGGAAGAAAGAAATTGTTAATGTGCGAAATTGT
1 TAAATTTTATGATTAAGGGGGAGAAAGAAATTGTTAATGTGCGAAATTGT
*
1990879 TAAATTTTATGATTAAGGGGGAGAAAAAAATTGTTAATGTGCGAAATTGT
1 TAAATTTTATGATTAAGGGGGAGAAAGAAATTGTTAATGTGCGAAATTGT
*
1990929 TAAATTTTATGATTAAAGGGGAGAAAGAAATTGTTAATGTGCGAAATTGT
1 TAAATTTTATGATTAAGGGGGAGAAAGAAATTGTTAATGTGCGAAATTGT
* *
1990979 TAAATTATT-TTATTAAGGTGGAGAAA
1 TAAATT-TTATGATTAAGGGGGAGAAA
1991005 TTTTTTGATT
Statistics
Matches: 118, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
50 116 0.98
51 2 0.02
ACGTcount: A:0.40, C:0.02, G:0.23, T:0.35
Consensus pattern (50 bp):
TAAATTTTATGATTAAGGGGGAGAAAGAAATTGTTAATGTGCGAAATTGT
Found at i:1991006 original size:22 final size:22
Alignment explanation
Indices: 1990980--1991024 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
1990970 CGAAATTGTT
*
1990980 AAATTATTTT-ATTAAGGTGGAG
1 AAATT-TTTTGATTAAGGGGGAG
1991002 AAATTTTTTGATTAAGGGGGAG
1 AAATTTTTTGATTAAGGGGGAG
1991024 A
1 A
1991025 GAAAAGAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 4 0.19
22 17 0.81
ACGTcount: A:0.36, C:0.00, G:0.27, T:0.38
Consensus pattern (22 bp):
AAATTTTTTGATTAAGGGGGAG
Found at i:1991598 original size:13 final size:13
Alignment explanation
Indices: 1991580--1991604 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1991570 AGATTGCATA
1991580 GTATCGATACATT
1 GTATCGATACATT
1991593 GTATCGATACAT
1 GTATCGATACAT
1991605 GACCAAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:1991723 original size:13 final size:13
Alignment explanation
Indices: 1991705--1991730 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1991695 ATACACAATA
1991705 TGTATCGATACAT
1 TGTATCGATACAT
1991718 TGTATCGATACAT
1 TGTATCGATACAT
1991731 CCCAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1991751 original size:33 final size:32
Alignment explanation
Indices: 1991685--1991752 Score: 82
Period size: 33 Copynumber: 2.1 Consensus size: 32
1991675 CCTTAACTAT
* * * *
1991685 TTGTATCGATATACACAATATGTATCGATACA
1 TTGTATCGATACACACAAAATGTATCAAAACA
*
1991717 TTGTATCGATACATCCCAAAATGTATCAAAACA
1 TTGTATCGATACA-CACAAAATGTATCAAAACA
1991750 TTG
1 TTG
1991753 GCTTGTAACG
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
32 12 0.40
33 18 0.60
ACGTcount: A:0.38, C:0.18, G:0.12, T:0.32
Consensus pattern (32 bp):
TTGTATCGATACACACAAAATGTATCAAAACA
Found at i:1992976 original size:13 final size:13
Alignment explanation
Indices: 1992958--1992982 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1992948 ACACAAAGTA
1992958 TGTATCGATACAT
1 TGTATCGATACAT
1992971 TGTATCGATACA
1 TGTATCGATACA
1992983 CCATAAAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1992979 original size:32 final size:33
Alignment explanation
Indices: 1992938--1993005 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
1992928 GTAGCCAAAC
*
1992938 TTGTATCGATACA-CA-AAGTATGTATCGATACA
1 TTGTATCGATACACCATAA-AATGTATCGATACA
1992970 TTGTATCGATACACCATAAAATGTATCGATACA
1 TTGTATCGATACACCATAAAATGTATCGATACA
1993003 TTG
1 TTG
1993006 GGTTGTAACG
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
32 13 0.39
33 18 0.55
34 2 0.06
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.32
Consensus pattern (33 bp):
TTGTATCGATACACCATAAAATGTATCGATACA
Found at i:1999188 original size:13 final size:13
Alignment explanation
Indices: 1999170--1999208 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
1999160 ACATCATTCT
1999170 TTGTATCGATACA
1 TTGTATCGATACA
1999183 TTGTATCGATACA
1 TTGTATCGATACA
*
1999196 CTGTATCGATACA
1 TTGTATCGATACA
1999209 GGGGGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:2001104 original size:53 final size:54
Alignment explanation
Indices: 2001027--2001146 Score: 194
Period size: 53 Copynumber: 2.3 Consensus size: 54
2001017 TTTATGATTA
2001027 ATTAAGGGGG--AGAATGTGCAAATTACTTTATCAAGGGGGAGA-TTTTTTTTG
1 ATTAAGGGGGAAAGAATGTGCAAATTACTTTATCAAGGGGGAGATTTTTTTTTG
* *
2001078 ATTAAGGGGGAAAGAATGTGCGAATTACTTTATCAAGGGGGAGATTTTTTTTTT
1 ATTAAGGGGGAAAGAATGTGCAAATTACTTTATCAAGGGGGAGATTTTTTTTTG
2001132 ATTAA-GGGGAAAGAA
1 ATTAAGGGGGAAAGAA
2001147 AAGAAAAATG
Statistics
Matches: 64, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
51 10 0.16
53 41 0.64
54 13 0.20
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (54 bp):
ATTAAGGGGGAAAGAATGTGCAAATTACTTTATCAAGGGGGAGATTTTTTTTTG
Found at i:2001871 original size:13 final size:13
Alignment explanation
Indices: 2001853--2001877 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2001843 ACACAAAGTA
2001853 TGTATCGATACAT
1 TGTATCGATACAT
2001866 TGTATCGATACA
1 TGTATCGATACA
2001878 CCATAAAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2001874 original size:32 final size:33
Alignment explanation
Indices: 2001833--2001900 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
2001823 GTAGCCAAAC
*
2001833 TTGTATCGATACA-CA-AAGTATGTATCGATACA
1 TTGTATCGATACACCATAA-AATGTATCGATACA
2001865 TTGTATCGATACACCATAAAATGTATCGATACA
1 TTGTATCGATACACCATAAAATGTATCGATACA
2001898 TTG
1 TTG
2001901 GCTTGTAACA
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
32 13 0.39
33 18 0.55
34 2 0.06
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.32
Consensus pattern (33 bp):
TTGTATCGATACACCATAAAATGTATCGATACA
Found at i:2003470 original size:159 final size:157
Alignment explanation
Indices: 2002771--2003481 Score: 436
Period size: 159 Copynumber: 4.5 Consensus size: 157
2002761 AGGAAAAGAT
* ** * * * * * *
2002771 TTTCATGCAAAAGAAAATCATCAATACCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTA
1 TTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTTTATGGTGCCTA
* * * * * *
2002836 ATCTCT-AAATGAATGAAGATCATTAC-CAGAATCCATGTTCGCCTCATTTGAGAAACGAACTTA
66 ATCT-TAAAAAGAATGAAGATCAGTACTGAGAATCCATGTACGCCTCATTTAAGAAA-TAACTTA
2002899 GACTTTACAAAAATTGATAGGAAAAAAACC
129 GACTTTACAAAAA-TGATAGGAAAAAAACC
* *
2002929 TTTCTTGCAAAACCAAAGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTA
1 TTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTTTATGGTGCCTA
* * ** * * * * * ** *
2002994 ATCTTGAAAAGAACGGGGATTAGT-GTGAGTATTCACAT-T-TGTCAAATTTAAGAAA-AACTTT
66 ATCTTAAAAAGAATGAAGATCAGTACTGAG-AATC-CATGTACGCCTCATTTAAGAAATAACTTA
* * * *
2003055 G-TTTCTATCAAAAACGGT-GGAAAGAAACGC
129 GACTT-TA-CAAAAATGATAGGAAAAAAAC-C
* * * * * *
2003085 TTTTCTTACAACACCAAAGCATCAATGTCATGTATCCTAATGAAG-GGAATGTGTTT-TGGTTTC
1 -TTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAAT-AAGAAGAATATGTTTATGG-TGC
* * ** * * * **
2003148 CCAATCTTAAAAAGAATGGAGAT-AGGTA-TGAGAATTGACGCTTA-TCCT-TTTTAAGGGATGA
63 CTAATCTTAAAAAGAATGAAGATCA-GTACTGAGAATCCATG--TACGCCTCATTTAAGAAAT-A
* * **
2003209 ACTTCA-ATTTTA-ATAAAA--ATAGCACAAAGAAAATAT
124 ACTT-AGACTTTACA-AAAATGATAG--GAAA-AAAA-CC
* ** * * * * *
2003245 TTTCATGCAAAAGAAAATCATCAATATCATCTATCCTAAAAAGAAGAGTATGTTTATAGTGCCTA
1 TTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTTTATGGTGCCTA
* * * *
2003310 ATCTCT-AAATGAGTGAAGATCATTACT-AGAATCCATGTACGCCTCATTTGAGAAACTAACTTA
66 ATCT-TAAAAAGAATGAAGATCAGTACTGAGAATCCATGTACGCCTCATTTAAGAAA-TAACTTA
*
2003373 GCCTTTACAAAAATTGATAGGAAAAAAAACC
129 GACTTTACAAAAA-TGATAGG-AAAAAAACC
* *
2003404 TTTCTTGCAAAACCAAAGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTA
1 TTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTTTATGGTGCCTA
* *
2003469 ATCCTGAAAAGAA
66 ATCTTAAAAAGAA
2003482 CGGGGATTAT
Statistics
Matches: 410, Mismatches: 102, Indels: 81
0.69 0.17 0.14
Matches are distributed among these distances:
155 12 0.03
156 18 0.04
157 89 0.22
158 100 0.24
159 164 0.40
160 20 0.05
161 3 0.01
162 4 0.01
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.30
Consensus pattern (157 bp):
TTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATATGTTTATGGTGCCTA
ATCTTAAAAAGAATGAAGATCAGTACTGAGAATCCATGTACGCCTCATTTAAGAAATAACTTAGA
CTTTACAAAAATGATAGGAAAAAAACC
Found at i:2003598 original size:475 final size:476
Alignment explanation
Indices: 2002647--2009121 Score: 6964
Period size: 475 Copynumber: 13.7 Consensus size: 476
2002637 GCTTTCAATT
* ** * * *
2002647 CTAATGAAGGGAATGTGTTTT-GCTTCCCAATCTTGAAAAAAAAAAGAGATTGGTATGAGAATCG
1 CTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTG-AAAAGAATGGAGACTGTTACGAGAATCG
* * * * ** * * *
2002711 ATGCTTGCCTTTTTTAAGGAATGAACTTTAATTTTAATAAAAATAGCGCGAGGAAAAGATTTTCA
65 ATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCA
* * *
2002776 TGCAAAAGAAAATCATCAATACCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCTC
130 TGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC
* * * * **
2002841 TAAATGAATGAAGATCATTACCAGAATCCATGTTCGCCTCATTTGAGAAACGAACTTAGACTTTA
195 AAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTA
* * * *
2002906 CAAAAATTGATA-GGAAAAAAACCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCCTAATA
260 CAAAAATTGGTAGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATG
* * * **
2002970 AGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAACGGGGATTAGTGTGAGTATTCACATTTG
325 AGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTG
* * * *
2003035 TCAAATTTAAGA-AAAACTTTGTTTCTATCAAAAACGGTGGAAAGAAACGCTTTTCTTACAACAC
390 TCAAATTTAAGAGAAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACAC
2003099 CAAAGCATCAATGTCATGTATC
455 CAAAGCATCAATGTCATGTATC
* * * * *
2003121 CTAATGAAGGGAATGTGTTTTGGTTTCCCAATCTTAAAAAGAATGGAGA-TAGGTATGAGAATTG
1 CTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACT-GTTACGAGAATCG
* * ** ** ** *
2003185 ACGCTTATCCTT-TTTAAGGGATGAACTTCAATTTTAATAAAAATAGCACAAAGAAAATATTTTC
65 ATGCTTGT-CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTC
* ** * * * *
2003249 ATGCAAAAGAAAATCATCAATATCATCTATCCTAAAAAGAAGAGTATGTTTATAGTGCCTAATCT
129 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * ** * ** * *
2003314 CTAAATGAGTGAAGATCATTACTAGAATCCATGTACGCCTCATTTGAGAAACTAACTTAGCCTTT
194 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT
* * * *
2003379 ACAAAAATTGATAGGAAAAAAAACCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCCTAAT
259 ACAAAAATTGGTAGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAAT
* * * * **
2003444 AAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAACGGGGATTATTGTGAGTATTCACATTT
324 GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTT
* * * * *
2003509 GTCAAATTTAAGAG-AAACTTTGTTTCTATCAAACACGGTAGAAAGAAAAGCTTTTTTTGCGAAA
389 GTCAAATTTAAGAGAAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACA
* * ** *
2003573 CCAAACCATGAATAACATATATC
454 CCAAAGCATCAATGTCATGTATC
* * * * *
2003596 CTAAAGAAAGGAATGTGTTTTGGCTTCCCAATCTTGAAACA-AATTGAGAC-GATTACAATAATC
1 CTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAA-AGAATGGAGACTG-TTACGAGAATC
* * *
2003659 GATACTCGTCTTATTTAAGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGA-TTTC
64 GATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTC
* *
2003723 AACGCAAAACAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC
129 -ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC
* *
2003788 ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTCTCTCATTTGAGGCACGAACTTAAACTT
193 ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTT
* * * * * *
2003853 TACAAAAGTTGG-CGGGAAAAAAGTCTTTCTTGCGAAACTAAAGCATCAATATGTTTTATCCTAA
258 TACAAAAATTGGTAGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAA
* * *
2003917 TGAGAAGACTTTGTTTATGGTCCCTAATCCTGAAAAGAATGGAGATT-GTATGAGTATTCATGTT
323 TGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTT
* * * * * *
2003981 TGTCAAATTTAAGATATAAACTTTGATTTTATAAAAAACTGTGGAAAGAAAAACTTTTCTTG-TA
388 TGTCAAATTTAAGAGA-AAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGA
*
2004045 GCACCAAAGCATTAATGTCATGT-TC
452 -CACCAAAGCATCAATGTCATGTATC
* * * *
2004070 CTTACA-GAAGGGAATGTGTTTTGGCATCCCAATCTTGAAAAGAATGGAGACTGTTTCAAGAATT
1 C-TA-ATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATC
* * * * * *
2004134 AATACTTATCTTATATAAGGGATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCC
64 GATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTC
* * * * *
2004199 ATGCAAAAAAAAATCATCAATATCTTTTATCCTAATGAGGAGATTGTGTTTGTAGTGCCTTATCA
129 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * *** * *
2004264 TAAAAAGAATGAAGATCATTACTA-AATCCATGTTTGTCTTGCTTGAGTCATGAACTTAGACTTT
194 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT
* * * *
2004328 ACAAAAATTGGTTA--GAAAAAAGCCTTTCTTGTGAAACTAAAGCATCAATGTGATGTACCCTAA
259 ACAAAAATTGG-TAGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAA
* * ** * * *
2004391 TGAGAAGACTATATTTATGGTGCCTAATCCTTAAAAGAATACGAATTAGTATCAGTATTTATGTT
323 TGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTT
* *
2004456 TGTCAAATTTAAGAGACAAACTTTGATTCTATCAAAACCAGTGGAAAGAAAAGCTTTTCTTGCGA
388 TGTCAAATTTAAGAGA-AAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGA
* * *
2004521 CACCAAAGCCTCAATGGCATATATC
452 CACCAAAGCATCAATGTCATGTATC
* * * * * * *
2004546 TTAAAGAAGGGAATGCGTTTTGGCTTCCCAATCTTGAAACGAATTGAGAC-GATTACAATAATCG
1 CTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTG-TTACGAGAATCG
* * *
2004610 ATACTCGTCTTATTTAAGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGA-TTTCA
65 ATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTC-
2004674 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTT-TAGTGCCTAATCA
129 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * *
2004738 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTCTCTCAATTGAAGCACGAACTTAGACTTT
194 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT
* * * * *
2004803 ACAAAAGTTGGT-GGGAAAAAAGTCTTTCTTGCGAAACTAAAGCATCAATAT-TTCTATCCTAAT
259 ACAAAAATTGGTAGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAAT
* * * * *
2004866 GAGAAGACTTTGTTTATGGTCCCTAATCCTAAAAAGAATGGAGATT-GTATGAGTATTCAAGTTT
324 GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTT
* * * * *** * *
2004930 GTCGATTTTAAGAGACAAACTTTGATTTTATAAAAAAATTATGCAAAGAAAAGCTTTTCTTG-TA
389 GTCAAATTTAAGAGA-AAACTTTGATTCTAT-CAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGA
* * *
2004994 GCACCGAAGCATTAATGTCATGTACC
452 -CACCAAAGCATCAATGTCATGTATC
* * * * *
2005020 CTAAAGAAGGGAATGTGTTTTGGCATCCCAATCTTGAAAAGAATGGAGACTGTTTCAAGAATCAA
1 CTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGA
* * ** *
2005085 TACTTGTCTTATTTAAGGGATGAACATTGATTTTAAGGAAAATAGGATAAAGGAAAGATTTTCAT
66 TGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCAT
* * * *
2005150 GCAAAAGAAAATCGTTAATATCATTTATCCTAATGAAGAGAATGTGTTTATAGTGCCTAATCATA
131 GCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACA
** * * *
2005215 AAATGAACAAAGATCATTACTAGAATCCATATTTCTCTCATTTGAGGCACAAACTTAGACTTTAC
196 AAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAC
* * * *
2005280 AAAAATTGGTA-GGATAAAAGCCTTTCTTTCGAAACTAAAGCATCAATACGATGTATCCTAATGA
261 AAAAATTGGTAGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGA
* * * * *
2005344 GAAGACTGTGCTTATGCG-CCCTAATCCTGGAAAGAATGGAGATT-GTATGAGTA-TCTATGTTT
326 GAAGACTATGTTTATG-GTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTC-ATGTTT
* * * ** * *
2005406 GTCAAATTTAAAAAACAAACTTTGATTCTATAAAAAACTATGAAAAGGAAAGCTTTTCTTGCGAC
389 GTCAAATTTAAGAGA-AAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGAC
*
2005471 A-CAGCAGCATCAATGTCATGTA-C
453 ACCA-AAGCATCAATGTCATGTATC
* * *
2005494 CTTGATTAATGGGAATGTGTTTTGGCATCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATC
1 C-TAATGAA-GGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATC
* * ** * * * * * *
2005559 AATACTTGTCTTATTTAAGCCATAAACTTTGACTTTATGGAAAATAGAGCAAAGGAAAGATTTTT
64 GATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTC
* * * *
2005624 GTGCAAAAGAAAATAATCAATATCATTTATCTTAATGAGGAGAATGTTTTTATAGTGCCTAATCA
129 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * * *
2005689 CAAAATGAATAAAGATCTTTACTAGAATCCATGTTTATCTCATTTGAGGCACAAACTTAGACTTT
194 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT
* * * * * ** *
2005754 ACAAAAATTAG-AGGGGAAAAAGCCCTTCTTGCTAAGCCAAAGCATCAATATCTTATATCCTAAT
259 ACAAAAATTGGTAGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAAT
* * * * *** *
2005818 GAGAAGGCTATATTTATGGTGCCTAATCTTTAAAAGAATGGGGATTAGTATGACCCTTCATGTAT
324 GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTT
** ** * *** * *
2005883 GTCTTATTTAAGAGAAAAAAATTGATTCTATGAAAAGTAGTGGAAACAAAAGCTTTTCTTGTGAC
389 GTCAAATTTAAGAG-AAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGAC
2005948 ACCAAAGCATCAATGTCATGTATC
453 ACCAAAGCATCAATGTCATGTATC
* * * * * * * *
2005972 CTACTAAAGAGAATGTGTCTTGGCAT-CCAATCTTGAAACGAATAGAGACTGTTACGAGAATTGA
1 CTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGA
* * * *
2006036 TGATTGTCTTATTTTGAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCA
66 TGCTTGTCTTA-TTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCA
*** * * * *
2006101 TATTAAAGAAAAACATCACTATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAAT-AA
130 TGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC
*
2006165 ATAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT
195 A-AAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT
* * * * * ** *
2006230 GCAAAAATTGGT-GGGAAAAATGCTTTTCCTGCGAAGCCAAAG-ATCAATATCCTATATCCTAAT
259 ACAAAAATTGGTAGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAAT
* * *** *
2006293 GAGAAGACTATGTTTATGGTGCCCAATCTTGAAAAGAATGGGGATTAGTATGACCCTTCATGTAT
324 GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTT
* * * * * *
2006358 GTCATATTGTACAGA-AAAACATTGACTCTATAAAAAAAAGGTGGAAAGAAAAGCTTTTCTTGCA
389 GTCAAATT-TA-AGAGAAAACTTTGATTCTAT-CAAAAACGGTGGAAAGAAAAGCTTTTCTTGCG
* *
2006422 ACACCAAAGCCTCAAAGTCGA-GTATC
451 ACACCAAAGCATCAATGTC-ATGTATC
* * ** * *
2006448 CTACA-GAAGGGAATGTGTCTTGGCTTCCCAATCTTGAAAATAATACAGAGTGTTACGAGAATTG
1 CTA-ATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCG
*
2006512 ATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGA-TTTCT
65 ATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTC-
* * * * *
2006576 ATGCAAAAGAAAATCATCAATATCAATTATCCTAACGTGGAGAATGTGTTTATAATGCCTAATTA
129 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * * *
2006641 CGAAATGAATGAAGGTCATTACTAGGATCCATGTTTGTCTCATTTGAGGTACGAACTTAGACTTT
194 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT
*
2006706 ACAAAAATTGG-AGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGTTGTATCCTAAT
259 ACAAAAATTGGTAGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAAT
* * * * * *
2006770 GAAAAGACTATGTTTATAGTGCCTAATCCTAAAAAGAACGGGGGTTAGTATGAGTTTTCATGTTT
324 GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTT
** * ** * *
2006835 GTCGTATTTAAAAGATAAACAATGATTCAATTAAAAAC-----------AA--------T-CGA-
389 GTCAAATTTAAGAGA-AAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGAC
** * *
2006879 AGAAAAGCATCAATGTCTTATATC
453 ACCAAAGCATCAATGTCATGTATC
* * * * *
2006903 CCAATGAAGGGATTGTGTTTTGGCTTCCCAATCTTGAAAAGAATAGAGAGT-TTGATGAGAATCG
1 CTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTT-ACGAGAATCG
* ** * * *
2006967 CTGCTTGTCTTATTTAACAGATGAACTTTGATTTAAAAGAAAATAGGGCAAAGAAAAGATTTTTA
65 ATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCA
* * *
2007032 TGCAAAAGATAATTATCAATATCATTTATCCTAAAT-AGGAGAATGTATTTATAGTGCCTAATCA
130 TGCAAAAGAAAATCATCAATATCATTTATCCT-AATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * * * *
2007096 TAAAATAAATGAAAATCATTACCAGAATCCATGTGTTATCTCATTTGAGGCACGAACTTAGACTT
194 CAAAATGAATGAAGATCATTACTAGAATCCATGT-TTGTCTCATTTGAGGCACGAACTTAGACTT
* * *
2007161 TGCAAAAATTGGT--GGAAAGAAAGCCTTTCTTGCGTAACCAAAGCATCAAAATTG-TGTATCCT
258 TACAAAAATTGGTAGGGAAA-AAAGCCTTTCTTGCGAAACCAAAGCATCAATA-TGATGTATCCT
* * * * * * *
2007223 AATGAGAAGACTATGTTCATGGTGCCAAATCCAGAAAAGATTGGGGATTTGTTTGACG-GTTCAT
321 AATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGA-GTATTCAT
* ***
2007287 GTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAATAATGGAAAGAAAAGCTTTTCTTG
385 GTTTGTCAAATTTAAGAGA-AAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTG
*
2007352 CGACACTAAAGCATCAATGTCATGTATC
449 CGACACCAAAGCATCAATGTCATGTATC
* * * * * *
2007380 CTAATGAAAGGAATGTGTTTTGGCTTCCCAATCTTAAAAAGAATAGAGATTGTTACAAGAATCAA
1 CTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGA
* * * * * * * *
2007445 TACTTATCTTTTTTATGGGATAAACTTTGATTTTAAAGG-AAATAAGGCAAAGAAAAGTTTTTAA
66 TGCTTGTCTTATTTAAGGGATGAACTTTGATTTT-AAGGAAAATAGGGCAAAGAAAAGATTTTCA
* * * *
2007509 TGCAAAAGAAAATCATCAATATTATTTATCCT-ATAAGAAGAATATGTTTATAGTGCCTAATCAC
130 TGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC
* * *
2007573 AAAATGAATGAAGATCATTACTAAAATCCATGTTT-TCTCATTTGAGGCATGAAATTAGACTTTA
195 AAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTA
* * * * * * * * * * *
2007637 CAGAAATTGGT-GAGAAGAAAGCCTTTCTTGTGAATCTAAAGCAACAATATCACGTATCTTAATA
260 CAAAAATTGGTAGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATG
* * * * *
2007701 AGAACACTATGTTTATGGCGCCTAATTCT-AAAAGGAATGGGGGTTAGTATGACTATTCATGTTT
325 AGAAGACTATGTTTATGGTGCCTAATCCTGAAAA-GAATGGGGATTAGTATGAGTATTCATGTTT
** * * * * * *
2007765 GTCTTATTTAAGAGACAAAATTTAATTCTGTAAAAAATGGTGGAAAGAAAAGCTTCTCTTGCGAC
389 GTCAAATTTAAGAGA-AAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGAC
2007830 ACCAAAGCATCAATGTCATGTATC
453 ACCAAAGCATCAATGTCATGTATC
* * * * *
2007854 CTAATGAAGGGAATGTGTTTTGTCTTCCTATTCTTGAAAAGAATGGAGATTGTTATGAGAATC-A
1 CTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGA
* ** * * *
2007918 GTGCTTGTTTTATTTAAGATATGAACTTTAATTTTAAGGAAAATAAGGTAAAGAAAAGATTTTCA
66 -TGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCA
* * * * *
2007983 TGCAAAAGAAAATCATCAATATCATTTATTCTAATGAGTAGAATATGTTTATAATGCCTAATCGC
130 TGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC
* * *
2008048 ATAATGAATGAAGATCATTACTAGAATCCATGTTCGTCTCATTTGAGGCACGAACATAGACTTTA
195 AAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTA
* * ** *
2008113 CAAAAATTGGTA-GG-AAAAAGCCTTTCTTGAGGAATGAAAGAATCAATATGATGTATCCTAATG
260 CAAAAATTGGTAGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATG
* * ** *
2008176 AGAAGACTACT-TTTATGGTGCCTATTCCTAAAAAGAACAGGGATTAGTGTGAGTATTCATGTTT
325 AGAAGACTA-TGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTT
* * *
2008240 GTCAAATTTAAGAGACAAACTTT-ATTTCTATCAAAAATGGTGGAAAGAAAAGTTTTTCTTACGA
389 GTCAAATTTAAGAGA-AAACTTTGA-TTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGA
** *
2008304 CACCAAAGCATCAATAACATATATC
452 CACCAAAGCATCAATGTCATGTATC
* * * *
2008329 CCAATGAAGGGAATGTGTTTTGG---------C----------T-GAGACTATTACGATAATTGA
1 CTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGA
* *
2008374 TGCTTGTCTTATTTAAGAGATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTTTCA
66 TGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGA-TTTTCA
* * * * * * * *
2008439 CGTAAAATAAAATCATTAATATCATTTATCCTGATGAGGAAAATGTGTTTATAATGCCAAATCAC
130 TGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC
* * * * *
2008504 AAAATGAATGAAGATCATCACTAAAATCTATTTTTGTCTCATTTGAGGCACAAACTTAGACTTTA
195 AAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTA
* * * * * * *
2008569 CAACAATTGGT-GGGAAAAAAGCCTTTTTTGAGAAGCCTAAGCATTAATATGATGTATCCTAACG
260 CAAAAATTGGTAGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATG
* * * * * * * * * **
2008633 AGAAGACTGTATTTATAGTTCCTAATTCTGAAAAGAATAGGGATTAGTATGA-CACTTCTTATAA
325 AGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTA-TTCATGTTT
** ** * **
2008697 GTCTTATTTAAGAGAAAAACAATGATTCAATC-AAAACGGTGGAAAGAAAATATTTTCTTGCGAC
389 GTCAAATTTAAGAG-AAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGAC
**
2008761 ATAAAAGCATCAATGTCATGTATC
453 ACCAAAGCATCAATGTCATGTATC
** ** * * * * * *
2008785 CTGTTGAAAAGAATATGTCTTGGCATCCCAATCTTGAAACGAATGGAGACTGTTTCGAGAATTGA
1 CTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGA
* * *
2008850 TGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGGCAAATAAAAGATTTCCAT
66 TGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCAT
* * * * * * * *
2008915 ACGAAAGAAAATCATTATTTTCATTTATCCTAATGAGGAGAATGTGTTTAGAGTACCTAATCACT
131 GCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACA
* *
2008980 AAATGAATGGAGATCATTACT-GCAATCCATGTTTGTCTCATTTGAGTCACGAACTTAGACTTTA
196 AAATGAATGAAGATCATTACTAG-AATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTA
* * * *
2009044 TAAAAATTGGTA-GGAAAAAA-CTTTTCTTGCGAAACCAAAGCATCGATATGATGTATCCTAACG
260 CAAAAATTGGTAGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATG
2009107 AGAAGACTATGTTTA
325 AGAAGACTATGTTTA
2009122 CTATAAGCTC
Statistics
Matches: 5075, Mismatches: 786, Indels: 280
0.83 0.13 0.05
Matches are distributed among these distances:
454 3 0.00
455 275 0.05
456 364 0.07
457 114 0.02
458 2 0.00
465 3 0.00
466 1 0.00
467 2 0.00
473 82 0.02
474 1117 0.22
475 1676 0.33
476 1052 0.21
477 372 0.07
478 12 0.00
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.31
Consensus pattern (476 bp):
CTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGA
TGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCAT
GCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACA
AAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAC
AAAAATTGGTAGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGA
GAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGT
CAAATTTAAGAGAAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACC
AAAGCATCAATGTCATGTATC
Found at i:2009883 original size:20 final size:20
Alignment explanation
Indices: 2009858--2009911 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 20
2009848 GTTTGGGACA
* ***
2009858 ATGTATCGATACAATTTTTT
1 ATGTATCGATACAATGTGCC
2009878 ATGTATCGATACAATGTGCC
1 ATGTATCGATACAATGTGCC
2009898 ATGTATCGATACAA
1 ATGTATCGATACAA
2009912 ACAGTGGTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (20 bp):
ATGTATCGATACAATGTGCC
Found at i:2009983 original size:32 final size:33
Alignment explanation
Indices: 2009942--2010003 Score: 99
Period size: 32 Copynumber: 1.9 Consensus size: 33
2009932 ACCAGTTTCA
*
2009942 TGTATCGATACAATG-AAAATGTATCGATATAG
1 TGTATCGATACAAAGCAAAATGTATCGATATAG
*
2009974 TGTATCGATACAAAGCATAATGTATCGATA
1 TGTATCGATACAAAGCAAAATGTATCGATA
2010004 CATCTAGATG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
32 14 0.52
33 13 0.48
ACGTcount: A:0.40, C:0.11, G:0.18, T:0.31
Consensus pattern (33 bp):
TGTATCGATACAAAGCAAAATGTATCGATATAG
Found at i:2019703 original size:33 final size:33
Alignment explanation
Indices: 2019649--2019711 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
2019639 TAGGACAATG
*
2019649 TATCGATACAATTCTTCATGTATCAATACATTA
1 TATCGATACAATTCTGCATGTATCAATACATTA
* *
2019682 TATCGATACAA-TGTGCAATGTATCGATACA
1 TATCGATACAATTCTGC-ATGTATCAATACA
2019712 AATTGTGGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
32 3 0.12
33 23 0.88
ACGTcount: A:0.37, C:0.17, G:0.11, T:0.35
Consensus pattern (33 bp):
TATCGATACAATTCTGCATGTATCAATACATTA
Found at i:2020808 original size:33 final size:33
Alignment explanation
Indices: 2020760--2020828 Score: 102
Period size: 33 Copynumber: 2.1 Consensus size: 33
2020750 TCGGTGAAGA
* *
2020760 GAACTAAATTTCTCATCCATGCACTCCGAAAGT
1 GAACTAAAGTGCTCATCCATGCACTCCGAAAGT
**
2020793 GAACTAAAGTGCTCATCCATGCACTGGGAAAGT
1 GAACTAAAGTGCTCATCCATGCACTCCGAAAGT
2020826 GAA
1 GAA
2020829 GTGATCAACT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.35, C:0.23, G:0.19, T:0.23
Consensus pattern (33 bp):
GAACTAAAGTGCTCATCCATGCACTCCGAAAGT
Found at i:2021603 original size:32 final size:33
Alignment explanation
Indices: 2021542--2021606 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
2021532 ACACACCCAG
*
2021542 ATGTATTGATACATTATGCTTTGTATCGATACA
1 ATGTATTGATACATTATGCATTGTATCGATACA
2021575 ATGTATTGATACATGT-T-CATTGTATCGATACA
1 ATGTATTGATACAT-TATGCATTGTATCGATACA
2021607 TTGCTTGTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 14 0.47
33 15 0.50
34 1 0.03
ACGTcount: A:0.31, C:0.12, G:0.15, T:0.42
Consensus pattern (33 bp):
ATGTATTGATACATTATGCATTGTATCGATACA
Found at i:2023430 original size:20 final size:20
Alignment explanation
Indices: 2023405--2023454 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
2023395 CACTGTTTGC
*
2023405 ATCGATACATGGT-ACATTGT
1 ATCGATACATGATGA-ATTGT
2023425 ATCGATACATGATGAATTGT
1 ATCGATACATGATGAATTGT
2023445 ATCGATACAT
1 ATCGATACAT
2023455 TGCTTCTCAC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
20 27 0.96
21 1 0.04
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.34
Consensus pattern (20 bp):
ATCGATACATGATGAATTGT
Found at i:2025065 original size:12 final size:12
Alignment explanation
Indices: 2025050--2025074 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
2025040 GAAAATGACA
2025050 ATGATGATGGTG
1 ATGATGATGGTG
2025062 ATGATGATGGTG
1 ATGATGATGGTG
2025074 A
1 A
2025075 CCCAGATGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.00, G:0.40, T:0.32
Consensus pattern (12 bp):
ATGATGATGGTG
Found at i:2027246 original size:27 final size:27
Alignment explanation
Indices: 2027192--2027261 Score: 108
Period size: 27 Copynumber: 2.7 Consensus size: 27
2027182 TTTAAAGAAT
*
2027192 AGGCCTAACATAAG-GA-AAAGAAAAA
1 AGGCCTAACATAAGTTATAAAGAAAAA
*
2027217 AGGCCTAACATAAGTTATAAAGGAAAA
1 AGGCCTAACATAAGTTATAAAGAAAAA
2027244 AGGCCTAACATAAGTTAT
1 AGGCCTAACATAAGTTAT
2027262 TTTCATCCTT
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
25 14 0.34
26 1 0.02
27 26 0.63
ACGTcount: A:0.51, C:0.13, G:0.19, T:0.17
Consensus pattern (27 bp):
AGGCCTAACATAAGTTATAAAGAAAAA
Found at i:2029843 original size:20 final size:21
Alignment explanation
Indices: 2029807--2029846 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
2029797 TTACAAATTT
*
2029807 CTTCATTTTTACTTCAAAATA
1 CTTCATTTTTACATCAAAATA
2029828 CTTCATTTTT-CATCAAAAT
1 CTTCATTTTTACATCAAAAT
2029847 TATCAACAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.33, C:0.20, G:0.00, T:0.47
Consensus pattern (21 bp):
CTTCATTTTTACATCAAAATA
Found at i:2035844 original size:476 final size:475
Alignment explanation
Indices: 2033478--2039355 Score: 6348
Period size: 476 Copynumber: 12.4 Consensus size: 475
2033468 CAGTATCAAT
* * * * *
2033478 ATTCATGTTTGTCAAATTTAAGAGACAAACTTTGATTCTATCAAAAACGGT-GAAAAAAAAACTT
1 ATTCATGTTTGTCATATTTAAGAGAAAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTT
* * * *
2033542 TTCTTGCGACACCAAAGCATCAATGACATATATCCTAATAAAGGGAATGTGTTTTGGCTTCCCAA
66 TTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTCTTGGCTTCCCAA
* * *
2033607 TCTTGAAAAGAATGGAGACTATTATGAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGAT
131 TCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGAT
* ** * *
2033672 TTTAAGGAAAATAGAGCAAAGAAAAGATTTCCACACCAAAGAAAATCATCAATATCGTTTATCCT
196 TTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCT
* * * * *
2033737 AGTAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAAATCATTTCTAGAATCCGTG
261 AATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* * * *
2033802 TTCATCTCATTTGAGACACGAACTTAGACTTTAAAAAAATTAGTGGGAAAAAAGCCTTTCTACTG
326 TTTATCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCT--TG
*
2033867 -AAACCAAAGCATCAATATGATGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAA-CTCTGA
389 CAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCT-TG-
* **
2033930 AAAAAAATGGGGATTAGTATGAGT
452 AAAAGAATGGGGATTAGTATGACC
* * * * * *
2033954 ATTCATGTTTGCCGA-ATTTAA-AGGACAAATTTTGATTCTACCAAAAA-TGATAGAAAGAAAAG
1 ATTCATGTTTGTC-ATATTTAAGA-GAAAAACTTTGATTCTATCAAAAACAG-TGGAAAGAAAAG
* ** * *
2034016 -----C-GGCGACACTGAAGCATCAATGTCAAGTATCCTAATGAAGGGAATGTG-CTTTTGCTTC
63 CTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTC-TTGGCTTC
* * * * * *
2034074 CCAATCTTTAAAAGATTGGAGACTATTACGAGAATTGATGTTTGTCTTATTTATGGGATGAACTT
127 CCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTT
* * * * * *
2034139 TGATTTTACGGAAAATAAGGCAAAGGAAAGATTTCCACGCAAAAGAAAATCATCAACATTATTTA
192 TGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTA
* *
2034204 TCCTAATGAGGAGAATGTGTTTATAGTGTCTAATCACAAAATGAATGAAGATCATTAGTAGAATC
257 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC
* * *
2034269 CATGTTTATCTTATTCGAGGCACGAA-TGTAGACTTTAC-AAAATTGGTGAGAAAAAAGCCTTTC
322 CATGTTTATCTCATTTGAGGCACGAACT-TAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTC
* * * *
2034332 TTTGGAAACGAAAGCATCAATATGATGTATCCTAATGAGAAGACTGTGTTTATGGTCCCTAATAC
386 -TTGCAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT-C
* * ** * **
2034397 TAG-AAAGAACGAAGACT-GTATGAGT
449 TTGAAAAGAATGGGGATTAGTATGACC
** * * *
2034422 ATTCATGTTTGTCGA-ATTTAAGAGATGAACTTTAATTCTATCAAAAACTGTGAAAAGAAAAGCT
1 ATTCATGTTTGTC-ATATTTAAGAGAAAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCT
* ** * * * * * *
2034486 TTTCTTGCGATACTGAAGTATCAATGTCATGTACCCTAATTAAAGGGAATGTGTTTTGGCATCCT
65 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAA-TGAAGGGAATGTGTCTTGGCTTCCC
** * ** * * * * * *
2034551 AATCTTGAAAAGAATATAAACTACTGCGAGAATCGATGGTTGTCATATTTAAGGTATAAACTTCG
129 AATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTG
* * * * **
2034616 ACTTTAAGAAAAATAGGGCAAAGGAAAGGTTTTAATGCAAAAGAAAATCATCAATATCATTTATC
194 ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATC
* * * *
2034681 CTAATGCGAAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCTTTACAAGAATCCA
259 CTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA
* * * ** * * *
2034746 TGTTTATCTCATTTGAGGCATGGACTTAGACTTAATGAAAATTGGTGAGAAGAATGCCTTTCTTG
324 TGTTTATCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTG
* * * * * * * * * *
2034811 TGAAA-CAAATTCATCAATATGATGTATTCTTAGGAGAATACTATGTTTATGGCGCTTAATATTC
389 -CAAACCAAA-GCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTG
* *
2034875 AAAAGAAT-AGGATTAGTATGACA
452 AAAAGAATGGGGATTAGTATGACC
* ** * *
2034898 ATTCATATTCATC-TCATTTAAGAGACAAACTTTCACTT-TATCAAAAAC-GATGGAAA-AAAAT
1 ATTCATGTTTGTCAT-ATTTAAGAGAAAAACTTTGA-TTCTATCAAAAACAG-TGGAAAGAAAA-
** * * ** * *
2034959 GCTTTTCTTATGACACCAAAGCATCAATATCATGTATCCTAAAGAAATGAATGCGTTTTGGCTTC
62 GCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTCTTGGCTTC
** * * *
2035024 CCAATCTTGAAAAGAATGGAGACTGTTGTGAGAATCGATACTTGTCTAATTTAAGGGATAAACTT
127 CCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTT
* * * *
2035089 TGAGTTTAAGGAAAATATGGTAAAGAAAAGATTTCCATTG--AAA-CAAATCATCAATATCATTT
192 TGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCA-TGCAAAAGAAAATCATCAATATCATTT
* * * * * * *
2035151 ATCCTAATAAGGAGAATGCGTTTATAGTGCTTAATTACAAAATGAATGATGATTATTACTAAAAT
256 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* ** * * *
2035216 CTATGTTTATCTCATTTGAGATATGAACTTAGAGTTTATAAAAATTGGTGGGAAAAAAGCCTTTC
321 CCATGTTTATCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTC
* * * *
2035281 TTAAG-AAACCAAAGCATCAATATAATGTATCCTAACGAGAAGACTATATTTATAGTGCCTAATC
386 TT--GCAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC
* *
2035345 TTTAAAAGAATTGGGATTAGTATGACC
449 TTGAAAAGAATGGGGATTAGTATGACC
* * * * *
2035372 CTTCATGTATGTCTTATTTAAGAGAAAAACATTGATTCGATCAAAAACAGTGGAAAGAAAAGCTT
1 ATTCATGTTTGTCATATTTAAGAGAAAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTT
* * *
2035437 TTCTTGCAACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTCTTGGCATCCCAA
66 TTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTCTTGGCTTCCCAA
* * * ** * * * * *
2035502 TCCTGAAATGAATAGAGACTGTTATAAGAATCGATGATTATCTTCTTTATGGGATGAACGTTGAT
131 TCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGAT
* * * *
2035567 TTTAAGGAAAATAGAGCAAAGAAAAGATTTCCATACTAAAA-AAAATCATCACTATCATTTATTC
196 TTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGC-AAAAGAAAATCATCAATATCATTTATCC
* *
2035631 TAATGAGAAGAATGTGTTTATAGTGCCTAATCA-ATAAATGAATGAAGATCATTACTTGAATCCA
260 TAATGAGGAGAATGTGTTTATAGTGCCTAATCACA-AAATGAATGAAGATCATTACTAGAATCCA
* * * * ** *
2035695 TGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGAGAAAAATGATTTTCCTG
324 TGTTTATCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTG
** * * * *
2035760 CAAAGCCAAAGCATCAATATCCTATATCCTAATAAGAAAACTATGTTTACGGTGCCTAATCTTGA
389 CAAA-CCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGA
*
2035825 AAATAATGGGGATTAGTATGACC
453 AAAGAATGGGGATTAGTATGACC
* * * * *
2035848 GTTCATGTTTGTCATATTTGAGAGTAAAACATTGATTCTA-CAAAAAACAGTAGAAAGAAAAGCT
1 ATTCATGTTTGTCATATTTAAGAGAAAAACTTTGATTCTATC-AAAAACAGTGGAAAGAAAAGCT
* * * * * * *
2035912 TTTCCTGCAACACCAAAGCATCACA-GCCATGTATCCTACA-AAAAGTATTGTGTCTTGGCTTCC
65 TTTCTTGCGACACCAAAGCATCA-ATGTCATGTATCCTA-ATGAAGGGAATGTGTCTTGGCTTCC
* **
2035975 CAATCTTGAAAAGAATGTAGACTGTTACGAGAATCGATGCTTGTCTTATTTATTGGATGAACTTT
128 CAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTT
* * ** *
2036040 GATTTTAAGAAAAATAAGGCAAAGAAAAGATTTTTATGCAAAAGAAAATCATCAATATCAATTAT
193 GATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTAT
** * * ** * *
2036105 CCTAGCGAGCAGAATGTGTTTATATTGCCTAATCATGAAATAAATGAAGATCATTACTAGGATCC
258 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
* * *
2036170 ATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGAGGGAAAAAAGCCTTTTTT
323 ATGTTTATCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTT
* * * * * *
2036235 GCAAAACCAAAGCATCAATATGTTGCATCTTAATGAGAAGGCTATGTTTATAGTGCCTAATCCTG
388 GC-AAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTG
* * * **
2036300 AAAGGAATGGGGGTTAATATGAGT
452 AAAAGAATGGGGATTAGTATGACC
* * * * * * *
2036324 TTTCATATTTGTCATATTTAAGAGAAAAACTTTGATTCAATTAAAAACGGTGCAAAGAAAAGATT
1 ATTCATGTTTGTCATATTTAAGAGAAAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTT
** * ** * * * * *
2036389 TTCTTAAGACACCAATGCAAAAAAGTCAAGTATCCCAATGAA-GAAATTGTGTTTTGGCTTCCCA
66 TTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAA-TGTGTCTTGGCTTCCCA
* * * ***
2036453 ATCTTTAAAAGAATGGAAAGTGTTACGAGAATCGATGCTTGTCTTATTTAACACATGAACTTTGA
130 ATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGA
* * *
2036518 TTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGATAATTATCAATATCATTTATCC
195 TTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCC
* * *
2036583 TAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAGTGAAAATCATTACCAGAATCCAT
260 TAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
* * *
2036648 GTTTATCTTATTTGAGGCACGTACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGC
325 GTTTATCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGC
* * * * ***
2036713 GTAACGAAAGCATCAATATCG-TGTATCCTAATGAGAAGACTATGTTCATGGTGCCAAATCCAAA
390 -AAACCAAAGCATCAATAT-GATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT-CTTG
* * * * *
2036777 AAAAGATTGGGAATTTGTTTGACG
452 AAAAGAATGGGGATTAGTATGACC
* ** *
2036801 ATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTCTCCCAAAAA-AATGGAAAGAAAAGCTT
1 ATTCATGTTTGTCATATTTAAGAGAAAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTT
* * * * *
2036865 TTCTTGCTACACCAAAGCATCATTGTCATGTTTCCTAATGAAGGGAATGTGTTTTGGATTCCCAA
66 TTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTCTTGGCTTCCCAA
* * *
2036930 TCTTGAAAAGAATGGATG-CTGTTATGAGAATCGATAG-TTATCTTATTTAAGGGATAAACTTTG
131 TCTTGAAAAGAATGGA-GACTGTTACGAGAATCGAT-GCTTGTCTTATTTAAGGGATGAACTTTG
* * *
2036993 ATTTTAAGGAAAATAGGGGAAAGAAAAGATTTTCATGGAAAAGAAAATCATCAATATCATTTATC
194 ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATC
* * * * * *
2037058 CTAATAAGGAGAATGTGTTTATATTGCCTAATTACAAAATCAATGACA-ATCATTACTAAAATCT
259 CTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA-AGATCATTACTAGAATCC
* * *
2037122 ATCTTTGTCTCATTTGAGGCATGAACTTA-ATCTTTACAAAAATTGGTGGGAAAAAAGCCTTTCT
323 ATGTTTATCTCATTTGAGGCACGAACTTAGA-CTTTACAAAAATTGGTGGGAAAAAAGCCTTTCT
* * * * *
2037186 TGGGAAACCAAAGCATCATTATGATGTATCCTAATAAGAAGACTATATTTGTGGTGCCTAATCTT
387 T-GCAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTT
*
2037251 TAAAAGAATGGGGATTAGTATGACC
451 GAAAAGAATGGGGATTAGTATGACC
* * * * * ** *
2037276 CTT-ACTGTATGTCTTATTTAAGAGAAAAACATT-ATTTCTATAAAAAATGGTGGAAATAAAAGC
1 ATTCA-TGTTTGTCATATTTAAGAGAAAAACTTTGA-TTCTATCAAAAACAGTGGAAAGAAAAGC
* * *
2037339 TTTTCTTAG-GACACCAAAGCATTAATGTCATGTATCCTATTGAAGAGGGAATGTGTCTTGGCAT
64 TTTTCTT-GCGACACCAAAGCATCAATGTCATGTATCCTAATG-A-AGGGAATGTGTCTTGGCTT
* * * * * *
2037403 CCCAATCTTGAAACA-CATAGAGATTGTTATGAGAATCAATGTTTGTCTTATTTAAGGGATGAAC
126 CCCAATCTTGAAA-AGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAAC
* * * * *
2037467 TTTGATTTTAAGGAAAATAGGGCAAAAAAAAGATTTCCATACCAAAGAAAATCATCACTAACATT
190 TTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATT
2037532 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA-ATAAATGAATGAAGATCATTACTAGA
255 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACA-AAATGAATGAAGATCATTACTAGA
* * * * * * * *
2037596 ATCCATGTTTCTCTCATTTAAGGCATGAACTTAAACTATACAAAAATTGGAGGGAAAAATGCTTT
319 ATCCATGTTTATCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTT
* * ** *
2037661 TCCTGCGAAGCCAAAGCATCAATATCCTATATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT
384 TCTTGC-AAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT
* *
2037726 CTTGAAAATAATGGTGATTAGTATGACC
448 CTTGAAAAGAATGGGGATTAGTATGACC
* * * * * * * *
2037754 CTTCATGTATGTCACATTTGAGAGTAAAACATTGATTCTATAAAAAACGGTGGAAAGAAAAGCTT
1 ATTCATGTTTGTCATATTTAAGAGAAAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTT
* * * *
2037819 TTCTTGCAACACCAAAGCATCACA-GTCATGTATCCTACA-GAAGGGATTGTGTCCTAGCTTCCC
66 TTCTTGCGACACCAAAGCATCA-ATGTCATGTATCCTA-ATGAAGGGAATGTGTCTTGGCTTCCC
* *
2037882 AATCTTGAAAAGAATGCAGACTGTTACGAGAATCGATGCTTGTCTTATTTATA-GGACGAACTTT
129 AATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTA-AGGGATGAACTTT
* * * ** * * *
2037946 GATTTTTAGGAAAATAAGGCAAA-AAAATATTTTTATGC-AAA-AAAACCATCAAGATCAATTAT
193 GATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTAT
* * * * *
2038008 CCTAACGAGGAGAATGTGTTTATAATGCCTAATCACGAAATGAATGAAGATCATTACTAGGATAC
258 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
* *
2038073 ATGTTTATCTCATTTGAGGCACGAAATTAGACTTTACAAAAATTGGCGGGAAAAAAGCCTTTCTT
323 ATGTTTATCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTT
* * * * *** * * *
2038138 GCGAAACCAAAGTATCAATATGTTGCATCCCAATTTCAAGACTATGTTAATAGTGCCTAATCCTG
388 GC-AAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTG
* **
2038203 AAAAGAATGGGGGTTAGTATGAGT
452 AAAAGAATGGGGATTAGTATGACC
* * * * * * * *
2038227 TTTTATGTTTGTCATATTTAAAAGACAAACTTTGATTCAATTAAAAACGGTGCAAAGAAAAGCTT
1 ATTCATGTTTGTCATATTTAAGAGAAAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTT
* * * * * ** * * *
2038292 TTCTTGTGACACCAACGCAACAAAGTCATGTATCCCAAAAAAGGGATTGTGTTTTGGCTTTCCAA
66 TTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTCTTGGCTTCCCAA
* *** *
2038357 TCTTGAAAAGAATGGAGAGTGTTACGAGAATCGATGCTTGTCTTATTTAACACATGAACTTGGAT
131 TCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGAT
* * * * * *
2038422 TTAAAGGAAAATAGGGTAAAGAAAAGATTTTCGTGCAAAAGATAATTATCAATATCATTTATCCT
196 TTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCT
* * * *
2038487 AATGAGGAAAATGTGTTTATAGTGCCTAATCACAAAATGAGTGAAGAACATTACCAGAATCCATG
261 AATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* * * *
2038552 TTTATCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGTG
326 TTTATCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTG-C
* * * * * * * *
2038617 TAACCAAAGCATCAATATCATGTATCCGAATGAGAAAACCATGTTCATGGTGCCAAATCCAT-AA
390 AAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT-CTTGAA
* * * *
2038681 AAGATTGGGGATTTGTTTGACG
454 AAGAATGGGGATTAGTATGACC
* * * *
2038703 ATTCAAGTTTGTCATATTTAAGAGACAAACTTTGATTCTACCAAAAA-AATGGAAAGAAAAGCTT
1 ATTCATGTTTGTCATATTTAAGAGAAAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTT
* * * * *
2038767 TTCTTGCTACATCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTG-CTTTGGATTTCCA
66 TTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTC-TTGGCTTCCCA
* * *
2038831 ATCTTGAAAAGAATGGAGACTATTACGAGAATCAATGCTTGTCCTATTTAAGGGATGAACTTTGA
130 ATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGA
* *** * *
2038896 TTTTAAGGAAAATAGGGCAAATAAAAGATTTTTGTGC-AAAGCATAATCATCAATATCAATTATC
195 TTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG-AAAATCATCAATATCATTTATC
* * * *
2038960 CTAATGAGGAGAATGTGTTTATGGTGCCTAATCACAAAATGAATGAAGATGATCACCAGAATCCA
259 CTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA
*
2039025 TGTTTATCTCATTTGAGGCACGAAATTATG-CTTTACAAAAATTGGTGGGAAAAAAGCCTTT-TT
324 TGTTTATCTCATTTGAGGCACGAACTTA-GACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTT
* * * *
2039088 TCTGAAACCAAAGCATCAATATCG-TGTATCCTAATGAGAAGACTATGCTCATGGTGCCTAATCG
388 GC--AAACCAAAGCATCAATAT-GATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCT
* * * * **
2039152 AGAAAAGATTGGGGATTTGTTTGATG
450 TGAAAAGAATGGGGATTAGTATGACC
* * * * * * *
2039178 ATTCATGTTTGTCTTATTTAAAAGAAAAACTTTGATTCTATCTAAACCAATGGAAACAAAAGCCT
1 ATTCATGTTTGTCATATTTAAGAGAAAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTT
* * * * *
2039243 TTCTTGCGACACCAAAGCATGAATGTCTTGTTTCCTAATGAAGGGAATGTGT-TTTGCTTCCTAA
66 TTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTCTTGGCTTCCCAA
* * * * *
2039307 TCCTGAAAAGAATGGAGAATGTGACGAGAATCAATGCTTGTCTTTTTTA
131 TCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTA
2039356 TAGTGCCTAA
Statistics
Matches: 4518, Mismatches: 781, Indels: 207
0.82 0.14 0.04
Matches are distributed among these distances:
468 57 0.01
469 14 0.00
470 77 0.02
471 254 0.06
472 6 0.00
473 564 0.12
474 253 0.06
475 872 0.19
476 1926 0.43
477 90 0.02
478 400 0.09
479 5 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (475 bp):
ATTCATGTTTGTCATATTTAAGAGAAAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTT
TTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTCTTGGCTTCCCAA
TCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGAT
TTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCT
AATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
TTTATCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCA
AACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAA
GAATGGGGATTAGTATGACC
Found at i:2039004 original size:159 final size:157
Alignment explanation
Indices: 2038362--2039004 Score: 382
Period size: 158 Copynumber: 4.1 Consensus size: 157
2038352 TCCAATCTTG
* * * * * * *
2038362 AAAAGAATGGAGAGTGTTACGAGAATCGATGCTTGTCTTATTTAACACATGAACTTGGATTTAAA
1 AAAAGAATGGAGACTATTACGAGAATCAATGCTTGTCCTATTTAAGACATGAACTTTGATTTTAA
* ** *
2038427 GGAAAATAGGGTAAAGAAAAGATTTTCGTGCAAAAG-ATAATTATCAATATCATTTATCCTAATG
66 GGAAAATAGGG-AAAGAAAAGATTTTTGTGCAAAAGCA-AAGCATCAATATCATGTATCCTAATG
*
2038491 AGGAAAATGTGTTTATAGTGCCTAATCAC
129 AGGAAAATGTGTTTATGGTGCCTAATCAC
* * * * * * * * * *
2038520 AAAATGAGTGAAGAAC-ATTACCAGAATCCATGTTTAT-CTCATTTGAGGCATGAACTTAGACTT
1 AAAA-GAATGGAG-ACTATTACGAGAATCAATGCTTGTCCT-ATTTAAGACATGAACTTTGATTT
* * * * *
2038583 TACA--AAAATTGGTAGGAAG-AAAGCCTTTCTTGTG--TAACCAAAGCATCAATATCATGTATC
63 TA-AGGAAAATAGG--GAAAGAAAAG-ATTT-TTGTGCAAAAGCAAAGCATCAATATCATGTATC
* ** * * *
2038643 CGAATGA-GAAAACCATGTTCATGGTGCCAAATCCAT
123 CTAATGAGGAAAA-TGTGTTTATGGTGCCTAAT-CAC
* * * ** * * * * ** *
2038679 AAAAGATTGGGGA-TTTGTTTGACGATTCAA-GTTTGTCATATTTAAGAGACAAACTTTGATTCT
1 AAAAGAATGGAGACTAT-TACGA-GAATCAATGCTTGTCCTATTTAAGACATGAACTTTGATTTT
*** * * * * * * *
2038742 ACCAAAAAAATGGAAAGAAAAGCTTTTCT-TGCTACATCAAAGCATCAATGTCATGTATCCTAAT
64 AAGGAAAATAGGGAAAGAAAAGATTTT-TGTGCAAAAGCAAAGCATCAATATCATGTATCCTAAT
* * * * **
2038806 GAAGAGAATGTGCTT-TGGATTTCC-AATCTTG
128 GAGGAAAATGTGTTTATGG--TGCCTAATC-AC
**
2038837 AAAAGAATGGAGACTATTACGAGAATCAATGCTTGTCCTATTTAAGGGATGAACTTTGATTTTAA
1 AAAAGAATGGAGACTATTACGAGAATCAATGCTTGTCCTATTTAAGACATGAACTTTGATTTTAA
* *
2038902 GGAAAATAGGGCAAATAAAAGATTTTTGTGC-AAAGCATAATCATCAATATCAAT-TATCCTAAT
66 GGAAAATAGGG-AAAGAAAAGATTTTTGTGCAAAAGCA-AAGCATCAATATC-ATGTATCCTAAT
*
2038965 GAGGAGAATGTGTTTATGGTGCCTAATCAC
128 GAGGAAAATGTGTTTATGGTGCCTAATCAC
2038995 AAAATGAATG
1 AAAA-GAATG
2039005 AAGATGATCA
Statistics
Matches: 355, Mismatches: 96, Indels: 67
0.69 0.19 0.13
Matches are distributed among these distances:
156 3 0.01
157 26 0.07
158 183 0.52
159 131 0.37
160 12 0.03
ACGTcount: A:0.38, C:0.13, G:0.19, T:0.30
Consensus pattern (157 bp):
AAAAGAATGGAGACTATTACGAGAATCAATGCTTGTCCTATTTAAGACATGAACTTTGATTTTAA
GGAAAATAGGGAAAGAAAAGATTTTTGTGCAAAAGCAAAGCATCAATATCATGTATCCTAATGAG
GAAAATGTGTTTATGGTGCCTAATCAC
Found at i:2039673 original size:375 final size:375
Alignment explanation
Indices: 2038977--2039730 Score: 1141
Period size: 375 Copynumber: 2.0 Consensus size: 375
2038967 GGAGAATGTG
* * * *
2038977 TTTATGGTGCCTAATCACAAAATGAATGAAGATGATCACCAGAATCCATGTTTATCTCATTTGAG
1 TTTATAGTGCCTAATCACAAAATGAATGAAAATCATCACCAGAATCCATGTTTATCTCATTTGAA
** * *
2039042 GCACGAAATTATGCTTTACAAAAATTGGTGGGAAAAAAGCCTTTTTTCTGAAACCAAAGCATCAA
66 GCACGAAATTACACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTCTAAAACCAAAGCATCAA
* * *
2039107 TATCGTGTATCCTAATGAGAAGACTATGCTCATGGTGCCTAATCGAGAAAAGATTGGGGATTTGT
131 TATCGTGTATCCTAATAAGAAGACTATGCTCATGGTGCCTAATCCAAAAAAGATTGGGGATTTGT
** * * * *
2039172 TTGATGATTCATGTTTGTCTTATTTAAAAGAAAAACTTTGATTCTATCTAAACCAATGGAAACAA
196 TTGACCATTCATATTTGTCTTATTTAAAAGAAAAACTTTGATTCCATCCAAAACAATGGAAACAA
* * * *
2039237 AAGCCTTTCTTGCGACACCAAAGCATGAATGTCTTGTTTCCTAATGAAGGGAATGTGTTTTGCTT
261 AAGCCTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTTTTGCTT
*
2039302 -CCTAATCCTGAAAAGAATGGAGAATGTGACGAGAATCAATGCTTGTCTTT
326 CCCT-ATCCTGAAAAGAATGGAGAATGTGACGAGAATCAATGCTTGTCTTA
* *
2039352 TTTATAGTGCCTAATCACAAAATGAATGAAAATCATTACCATAATCCATGTTTATCTCATTTGAA
1 TTTATAGTGCCTAATCACAAAATGAATGAAAATCATCACCAGAATCCATGTTTATCTCATTTGAA
* * * *
2039417 GCATGAACTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGTAAAACCAAAGCATCAA
66 GCACGAAATTACACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTCTAAAACCAAAGCATCAA
* *
2039482 TATTGTGTATCCTAATAAGAAGACTATGTTCATGGTGCCTAATCCAAAAAAGATTGGGGATTTGT
131 TATCGTGTATCCTAATAAGAAGACTATGCTCATGGTGCCTAATCCAAAAAAGATTGGGGATTTGT
* * *
2039547 TTGACCATTCATATTTGTCTTATTTAAAATACAAACTTTGATTCCATCCAAAACAATGGAAAGAA
196 TTGACCATTCATATTTGTCTTATTTAAAAGAAAAACTTTGATTCCATCCAAAACAATGGAAACAA
* * *
2039612 AAGCTTTTCTTGTGACACTAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTTTTGCTT
261 AAGCCTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTTTTGCTT
* * *
2039677 CCCTATCCTGAAAAGAATGGAGACTGTTACGAGAATTAATGCTTGTCTTA
326 CCCTATCCTGAAAAGAATGGAGAATGTGACGAGAATCAATGCTTGTCTTA
2039727 TTTA
1 TTTA
2039731 ATGGATGAAT
Statistics
Matches: 339, Mismatches: 39, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
375 336 0.99
376 3 0.01
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.32
Consensus pattern (375 bp):
TTTATAGTGCCTAATCACAAAATGAATGAAAATCATCACCAGAATCCATGTTTATCTCATTTGAA
GCACGAAATTACACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTCTAAAACCAAAGCATCAA
TATCGTGTATCCTAATAAGAAGACTATGCTCATGGTGCCTAATCCAAAAAAGATTGGGGATTTGT
TTGACCATTCATATTTGTCTTATTTAAAAGAAAAACTTTGATTCCATCCAAAACAATGGAAACAA
AAGCCTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTTTTGCTT
CCCTATCCTGAAAAGAATGGAGAATGTGACGAGAATCAATGCTTGTCTTA
Found at i:2042249 original size:475 final size:474
Alignment explanation
Indices: 2039352--2046294 Score: 7410
Period size: 475 Copynumber: 14.6 Consensus size: 474
2039342 GCTTGTCTTT
* * * *
2039352 TTTATAGTGCCTAATCACAAAATGAATGAAAATCATTACCATAATCCATGTTTATCTCATTTGAA
1 TTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCTCATTTGAG
** * * **
2039417 GCATGAACTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGTAAAACCAAAGCATCAA
66 GCAAAAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAA
* * ** * * *
2039482 TATTG-TGTATCCTAATAAGAAGACTATGTTCATGGTGCCTAATCCAAAAAAGATTGGGGATTTG
131 TA-TGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAG
* ** * * * * * **
2039546 TTTGACCATTCATATTTGTCTTATTTAAAATACAAACTTTGATTCCATCCAAAACAATGG-AAAG
195 TATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAAG
* * *
2039610 AAAAGCTTTTCTTGTGACACTAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTTTT-G
260 -AAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGG
* * **
2039674 CTTCCCTATCCTGAAAAGAATGGAGACTGTTACGAGAATTAATGCTTGTCTTATTTAATGGATGA
324 CTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAA-GGATGA
* * * * *
2039739 ATTTTGATTTTAAGGGAAATAAGGCAATGAAAAG-TTTTCCATGTAAAAGAAAATCATCAATATC
388 ACTTTGATTTTAAGGAAAATAGGGCAA-AAAAAGATTTT-CATGCAAAAGAAAATCATCAATATC
2039803 ATTTATCCTAATGAGGAGAATGTG
451 ATTTATCCTAATGAGGAGAATGTG
* *
2039827 TTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATATTTATCTTATTTGAG
1 TTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCTCATTTGAG
** * * * * * * *
2039892 GCATTAACTTTGACTTTACAAAAATTGGTGAGAAGAAAGCATTTCATGTGAATCCAAAGCATCAA
66 GCAAAAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAA
* * * *
2039957 TATCGA-GTATACTAATGAGAAGACTATGATTATGGTGCCTTATCCTGAAAAGAATAGGGGTTAG
131 TAT-GATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAG
* * * *
2040021 TATGACTATTCATGTTTGTCTTATTTTGAGAGACAAACTTTGATACTATCAAAAATGGTGG-AAA
195 TATGAGTATTCATGTTTGTCTTA-TTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAA
* * * * *
2040085 GAAAAGCTTTTCTAGCGACACCAAAGCATCAATGCCTTGTATCCTAATGATGGTAATGTGTTTTG
259 G-AAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTG
* * * * *
2040150 TCTTCCCAATCCTGAAAAGAATGGAGACTATTATGAGAATTGATGCTTGTCTTATTTAAGGGATG
323 GCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAA-GGATG
* *
2040215 AACTTTAATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCGTCAATATC
387 AACTTTGATTTTAAGGAAAATAGGGCAAA-AAAAGATTTTCATGCAAAAGAAAATCATCAATATC
*
2040280 ATTTATCCTAACGAGGAGAATGTG
451 ATTTATCCTAATGAGGAGAATGTG
* * * * * *
2040304 TTTATAGTGCCTAATCACAAAATGAATAAAGAGCATTACTAGAATCGATGTTCACCTCATTCGAG
1 TTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCTCATTTGAG
* * *
2040369 GCATGAAA-TTAGACTTTACAAAAATTGGTGGG-AAAAAGCCCTTTCTTGCAAAACTAAAGCA-C
66 GCA-AAAACTTAGACTTTACAAAAATTGGTGGGAAAAAAG-CCTTTCTTGCGAAACCAAAGCATC
* * * * * *
2040431 AGTATGATGTATCCTAATGAGAAGACTGTGTTTATGGTCCCTAATCCTGGAAAGAACAGAGATT-
129 AATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTA
* * * * *
2040495 GTATGAGTATTCATGCTTGTCTAATTTAAAAGATAAACTTTGATTCTATCAAAAACTGT-GAAAA
194 GTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAA
* * * *
2040559 GAAAAGC-TTTCTTGCAACACCATAGC-TTAATGTCATGTA-CCTTAATGAAAGGAATGTGTTTT
259 G-AAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCC-TAATGAAGGGAATGTGTTTT
* * * * * *
2040621 GGCATCCCAATCTTGAAAAAAATGGAGCCTGTTACGAGAATCGATACTTGCCTTATTTAGGGGAT
322 GGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTA-AGGAT
* * * * * * *
2040686 AAATTTTGATTTTCAGGAAAATAGGTCAAGAAAAGATTTCCATGCAAAAGAAAATTATCAATATC
386 GAACTTTGATTTTAAGGAAAATAGGGCAAAAAAAGATTTTCATGCAAAAGAAAATCATCAATATC
* *
2040751 ATTTATCCTAATAAGGAGAATATG
451 ATTTATCCTAATGAGGAGAATGTG
* * * *
2040775 TTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAAAATCCATATTTCTCTTATTTGAG
1 TTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCTCATTTGAG
** * * * *
2040840 GCACGAACTTAGATTTTACAAAAATTGGTGGGAAAAAAGCCATTCTTGTGAAACCAAAGTATCAA
66 GCAAAAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAA
* **
2040905 TATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAACGGGGATTAGT
131 TATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGT
* * * *
2040970 GTGAGTATTCATGTTTGT-TAAATTTAAGAGACAAACTTTGATACTATCAAAAATGGTGGAAATA
196 ATGAGTATTCATGTTTGTCT-TATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAA-A
* ** * * * *
2041034 -AAAGCTTTTCTTGCAACACCAAAGCATCAATAACATATATCCTGATGAAAGAAATGTGTTTTGG
259 GAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGG
* * * * *
2041098 CTTCCCAATCTTGAAAATAATGGAGACTGTTACGACAATTGATACTTGTCTTATTTAAGGTATAA
324 CTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGG-ATGA
* * * * *
2041163 ACTTTGACTTTATGGAAAATAGGGCTAAAGAAAGATTTCCATGCAAAAGAAAATCGTCAATATCA
388 ACTTTGATTTTAAGGAAAATAGGGC-AAAAAAAGATTTTCATGCAAAAGAAAATCATCAATATCA
2041228 TTT-TCCCTAATGAGGAGAATGTG
452 TTTAT-CCTAATGAGGAGAATGTG
* * * *
2041251 TTTATAGTGCCTAATCATAAAAAGAATGAAGATCCTTACTAGAATCCATGTTTATCTCATTTAAG
1 TTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCTCATTTGAG
* * * ** *
2041316 GCATAAACTTAGACGTAATGAAAATTGGTGAGAAAAAAGCCTTTCTTGCGAAA-CAAATGCATCA
66 GCAAAAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAA-GCATCA
* * * * *
2041380 ATATGAAGTATCTTAATGA-AAAAGCTATGTTTATGGTGCCTAATCTTCAAAAGAA-AGGGAATT
130 ATATGATGTATCCTAATGAGAAGA-CTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGG-ATT
* * * * *
2041443 AGTATGATTATTCATGTTTGTTTTATTTAAGAGACTAACTTTGACTCTATCAAAAATGGTGGAAA
193 AGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAA
* * * * * * *
2041508 A-AAAGTTTTTCTTGTGACACCAAAGCATTAGTGTCATGAATCCTAATAAAGGGAATGCGTTTTG
258 AGAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTG
* * * * *
2041572 GCTTCCTAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATACTTATCCTATTTATAGGATG
323 GCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTA-AGGATG
* * *
2041637 AACTTTGATTTTAAAG-AAATAGGGTAAAGAAAAGATTTTCATGCAAAAGAAAATCATTAATATC
387 AACTTTGATTTTAAGGAAAATAGGGCAAA-AAAAGATTTTCATGCAAAAGAAAATCATCAATATC
** ** *
2041701 AACTATCCTAACAAGGAGAAAGTG
451 ATTTATCCTAATGAGGAGAATGTG
* ** * *
2041725 TTTAAAGTGTGTAATCACAAAATGAATGAAGATCATTACTAGGATCCATGTTTGTCTCATTTGAG
1 TTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCTCATTTGAG
* * **
2041790 GCAAAAACTTAGACTTTACAAAAATTGGAGGGAAAAAAGCCTTTGTTGTC-AAATGAAAGCATCA
66 GCAAAAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTG-CGAAACCAAAGCATCA
* * * * * * *
2041854 AAATGATGTATCTTAATCAGAAGACTATTTTTATAGTGCCTAAT-CTAGAAAATAATCGGGATTA
130 ATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT-GAAAAGAATAGGGATTA
* * *
2041918 GTATGAGTTTTCATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATTAAAAACGGTGGAAAA
194 GTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAA
* * * * * *
2041983 GAAAGCTTTTCTTACAACACTAAAGGATCAATGTCAAGTATCCCAATGAAGGGAATGTGTTTTGG
259 GAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGG
* * *
2042048 CTTCCCAATCTTGAAAAGAATAGAGAGTGTTACGAGAATCGATGCTTGTCTTATTTACAAGATGA
324 CTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTA-AGGATGA
* * * * * *
2042113 ACTTTAATTTTAAGGAAAATTGGGTAAAAAAATATTTTCGTGCAAAAGATAATCATCAATATCAT
388 ACTTTGATTTTAAGGAAAATAGGGCAAAAAAAGATTTTCATGCAAAAGAAAATCATCAATATCAT
*
2042178 TTATCTTAATGAGGAGAATGTG
453 TTATCCTAATGAGGAGAATGTG
* * *
2042200 TTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACCAGAATCCATGTTTATCTTACTTGAG
1 TTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCTCATTTGAG
** * *
2042265 GCACGAACTTATACTTTACAAAAATTGGT-AGAAAGAAAGCCTTTCTTGCGAAACCAAAGCATCA
66 GCAAAAACTTAGACTTTACAAAAATTGGTGGGAAA-AAAGCCTTTCTTGCGAAACCAAAGCATCA
* * * * * * *
2042329 ATATCG-TGTATCCTAATGAGAAGACTATGTTCATAGCGCCTAATCCAGAAAAGATTGGGGATTT
130 ATAT-GATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTA
* * * **
2042393 GTTTGACG-AGTT-ATATTTGTCTTATTTAAGAGACAAACTTTGATTATATCAAAAACAATGG-A
194 GTATGA-GTA-TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAA
* * * * *
2042455 AAGAAAAGCTTTTCTTGGGACCCCAAAGCATTAATATCATGTATCCTAAT-ACAAGGAATGTGTT
257 AAG-AAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGA-AGGGAATGTGTT
* * * *
2042519 TTGGCTTCCCAATCCTGAAAAGAATGGAGACTGTTACGTGAATCGATGGTTGTCTT-TTTATTGG
320 TTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTA-AGG
** * * * * *
2042583 AAAAACTTTGATTTTAAGGGAAATAAGGCGAAGAAAA-TTTTTCCAT-CAAAAGAAAATCATTAA
384 ATGAACTTTGATTTTAAGGAAAATAGGGC-AAAAAAAGATTTT-CATGCAAAAGAAAATCATCAA
* * * *
2042646 TATCATTTATCTTATTGAGAAGAATGCG
447 TATCATTTATCCTAATGAGGAGAATGTG
* * * *
2042674 TTTATAGTGCCTCATCACAAAATGAGTAAAGATCATTACTAGAATCCATGTTTATCTTATTTGA-
1 TTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCTCATTTGAG
* * *
2042738 G-AAATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATT
66 GCAAA--AACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATC
* * * *
2042802 AATATCG-TATATCCTAATGAGTAGACTACGTTTATGGTGCCTAATCCTTAAAAGAATAGAGG-T
129 AATAT-GATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAG-GGAT
* * * *
2042865 TGGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTTGATTCTATCAAAAATGGTAGA
192 TAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAAC-TTTGATTCTATCAAAAACGGTGGA
2042930 AATA-AAAGCTTGTT-TTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGT
256 AA-AGAAAGCTT-TTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGT
* * *
2042993 TTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGGTATGAGAATC-AGTGCTTGTCTTTTTTAAG
319 TTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGA-TGCTTGTCTTATTTAA-
* *
2043057 GGATGAACTTTAATTTTAAGGAAAAAATAGTGCAAAGAAAAGATTTTCATGCAAAAGAAAATCAT
382 GGATGAACTTTGATTTTAAGG--AAAATAGGGCAAA-AAAAGATTTTCATGCAAAAGAAAATCAT
* *
2043122 CAATATCCTTTATCCTAATGAGGAAAATGTG
444 CAATATCATTTATCCTAATGAGGAGAATGTG
* ** * * * **
2043153 TTTACAGTGATTAATAACTAAATGAATGAAGAACATTACTAGAATCCATGTTTGCCTCATTTGAG
1 TTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCTCATTTGAG
**** * * * * * *
2043218 GTTTGAACTTAGACTTTACAAAAATTAGTAGGAAAAAAGCGTTTCTTACAAAACCAAATCATCAA
66 GCAAAAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAA
* * * * * *
2043283 TATGATGTATCTTAATGAGAAGACTATGCTTATGATGCCTAATCTTCAAAAGAATGGGGATTAGT
131 TATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGT
* * *** * *
2043348 GTGAGTATTCATGTTTATGAAATCTAAGAG--AAACTTTG-TGTCTATCAAAAACAGTGG-AAAG
196 ATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT-TCTATCAAAAACGGTGGAAAAG
* ** * *
2043409 AAAAGCTTTTCTTGCTACACCAAAGCATCAATAACATATATCTTAATGAAGGGAATGTGTTTTGG
260 -AAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGG
* * ** * * * *
2043474 CTTTCTAATCTTGAATTGAATTGAGACTATTATAACGACAA---ATGCTTGTCTTATTAAAGGGA
324 CTTCCCAATCTTGAAAAGAATGGAGACT-GT-T-ACGAGAATCGATGCTTGTCTTATTTAA-GGA
* * *
2043536 TGAGCTTTGA-TTT-------A-A-GG----AAAAGATTTCCACGCAAAAGAAAATCATCAATAT
385 TGAACTTTGATTTTAAGGAAAATAGGGCAAAAAAAGATTTTCATGCAAAAGAAAATCATCAATAT
*
2043587 CATTTATCCTAATGAGGAGATTGTG
450 CATTTATCCTAATGAGGAGAATGTG
* *
2043612 TTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTCTATCATTTGAG
1 TTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCTCATTTGAG
* ** * * * * *
2043677 GGACGAACATAGACTTTACAAAAATTGGTGGGAGAAAACCCTTTCTTGTGAAACTAAAGCATCAA
66 GCAAAAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAA
* * * * *
2043742 TTTGATGTATCCTAATGAGAAGACTGTGGTTATGGTCCCTAATCCTGAAAAG-ATTGGAGATT-G
131 TATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGG-GATTAG
* * * * **
2043805 TATGAGTTTTCATGTTTGTCGTATTTAAGAGACCAATTTTGATTCTATCAAAAACTATGG-AAAG
195 TATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAAG
* * * * * *
2043869 AAAAGCTTTTATTGCTACATCGAAA-CATTAGTGTCATGTACCCTAATGAAGGGAATGTGTTTTG
260 -AAAGCTTTTCTTGCGACA-CCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTG
* * * * * * * ** * *
2043933 GCATCTCAATCATGAAAAAAATGGTGACTATTTCGAGAATTAATACTTGTATTATTTAAGGGATG
323 GCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAA-GGATG
* *
2043998 AA-TGTTGATTTTGAGGAAAATAGGGTAAAAAAAAGATTTTCATGCAAAAGAAAATCATCAATAT
387 AACT-TTGATTTTAAGGAAAATAGGG-CAAAAAAAGATTTTCATGCAAAAGAAAATCATCAATAT
**
2044062 CGCTTATCCTAATGAGGAGAATGTG
450 CATTTATCCTAATGAGGAGAATGTG
* * * *
2044087 TTTATAGTGCCTTATCACAAAATGAATGAAGATCATTACTAAAATCCATGTTTGTCTTATTTGAG
1 TTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCTCATTTGAG
* * * ** * * * *
2044152 TCAGAAACTTAGACTTTACAAAAATTAGTAAGAAAAAAGCCTTTCTTACAAAACTAAAGCATCAG
66 GCAAAAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAA
** ** *
2044217 TACAATGTATCCTAATGAGAAGACGGTGTTTATGGTCCCTAATCCTGAAAAGAAT-GGAGATT-G
131 TATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGG-GATTAG
** * ** *
2044280 TATGAGTA-TCTATGTTTGTCGAATTTAAGAGACAAACTTTGCTTCTATCAAAAACAATGAAAAA
195 TATGAGTATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAA
* * ** ** * * * *
2044344 AAAAGCTCTAATTGCGACACTGAAGCATTAATGTCATGTA-CCATAATTAAAGGGATTCTGTTTT
259 GAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCC-TAA-TGAAGGGAATGTGTTTT
* * ** * *
2044408 GGCATCCCAATCTTGAAAAGAATGGAGACTATTTGTGAGAATCGGTACTTGTCTTATTTAAGGTA
322 GGCTTCCCAATCTTGAAAAGAATGGAGACT-GTTACGAGAATCGATGCTTGTCTTATTTAAGG-A
* * * *
2044473 TAAACTTTGACTTTAAGGAAAAT-GGAGCAAAAGAAAGATTTCCATGCAAAAGAAAATTATCAAT
385 TGAACTTTGATTTTAAGGAAAATAGG-GCAAAA-AAAGATTTTCATGCAAAAGAAAATCATCAAT
* * * * * *
2044537 ATTAATTATCTTAACGAGAAGAAAGTG
448 ATCATTTATCCTAATGAGGAGAATGTG
* * * * *
2044564 TTTAAAGTGCGTAATCACAAAATGAATGAAGATCACTACTA-AGATCCATGTTTGTCTCATTTAA
1 TTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGA-ATCCATGTTTATCTCATTTGA
* * * * * *
2044628 GGCAAGAACTTAGGCTTCACAAAAATTGGAGGAAAAAAAGCCTTTCTTGCGAAACGAAAGCATCA
65 GGCAAAAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCA
* * * * *
2044693 ATATGATGTATCCTAATGAGAAGCCTATGTTTATAGTGCCTAATCCTAAAAATAATGGGGATTAG
130 ATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAG
* * * * * * *
2044758 TATGAGTGTTCATGTTTGACATATTTAAGACACAAAGTTTGATTATA-CTAAACACGGTGG-AAA
195 TATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC-AAAAACGGTGGAAAA
* * * * **
2044821 GAAATGCTTTTCTTACAACACCAAAGCATCAATGTCAAGTATCCCAATGAAAAGAATGTGTTTTG
259 GAAA-GCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTG
* * * * *
2044886 GCTTTCCAATCTTGAAAAGAATGGAGAGTATTATGAGAATCGATTCTTGTCTTATTTAAAGGATG
323 GCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTT-AAGGATG
* * * * * *
2044951 AACTTTAATTTTAAGAAAAATAAGGCAAAGAAAAGA-TTTCTGTGCAAAAGATAATCAACAATAT
387 AACTTTGATTTTAAGGAAAATAGGGCAAA-AAAAGATTTTC-ATGCAAAAGAAAATCATCAATAT
**
2045015 CATTTATCCTAATGAGGAGACCGTG
450 CATTTATCCTAATGAGGAGAATGTG
* *
2045040 TTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAAAATCCATGTTTATCTCATTTAAG
1 TTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCTCATTTGAG
* * * * *
2045105 GCATAAACTTATACTTTACAGAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAA
66 GCAAAAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAA
* * * * *
2045170 TATCG-TGTATCCTAATGAGAAGACTAT-TTTCATAGAGCCTAATCCAGAAAAGATTAGGGATTT
131 TAT-GATGTATCCTAATGAGAAGACTATGTTT-ATGGTGCCTAATCCTGAAAAGAATAGGGATTA
* * *
2045233 GTTTGACG-ATTCATGTTTGTTTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGG-AA
194 GTATGA-GTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAA
* * *
2045296 AGAAAAGCTTTTCTTGCAACCCCAAAGCATTAATGTCATGTATCCTAATGAA-GGAAT-TGCATT
258 AG-AAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG--TT
* * * * *
2045359 TTGGATTCCCAATCTTGAAAAGAATAGAGACTATTAC-ATGAATCGATGCTTGTCTTTTTTATTG
320 TTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGA-GAATCGATGCTTGTCTTATTTA-AG
* * *
2045423 GATAAACTTTGATTTTAAGGGAAATAGGGCAAAGAAAAG-TTTTCCAT-CAAAAGAAAATCATTA
383 GATGAACTTTGATTTTAAGGAAAATAGGGCAAA-AAAAGATTTT-CATGCAAAAGAAAATCATCA
* * *
2045486 ATATCATTTATCTTAATGAGAAGAATGCG
446 ATATCATTTATCCTAATGAGGAGAATGTG
**
2045515 TTTATAGTGCCCCATCACAAAAT-AAGTGAAGATCATTACTAGAATCCATGTTTATCTCATTTGA
1 TTTATAGTGCCTAATCACAAAATGAA-TGAAGATCATTACTAGAATCCATGTTTATCTCATTTGA
* * * **
2045579 -GAAATAAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTACTTGCGAAACCAACTCATC
65 GGCAA-AAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATC
* * * * * * *
2045643 AATATCG-CGTATCCCAATAAGAAGACTAGGTTTACGGTGCCTAATCCTGAAAAGAATGGGGGTT
129 AATAT-GATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATT
* * * ** *
2045707 AGTATGACTATTCAAGTTTGTCTTATTTAAGAGACAAATTTTGATTCTATCCGAAACAGTGGAAA
193 AGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAA
* * * *
2045772 AAAAAGCTTTTCTTCCGACATCAAAGCATTAATGTCATGTATCCTAATGAA-GGAATGTGTTTTG
258 AGAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTG
* * ** *
2045836 GCTTCCCAATCTTGAAAAGTATAGAGACTAGTATA--AGAATCGATATTTGTCTTTTTTAAGGGA
323 GCTTCCCAATCTTGAAAAGAATGGAGACT-GT-TACGAGAATCGATGCTTGTCTTATTTAA-GGA
* ** *** *
2045899 TGAACTTTAATTTTAATAAAAATAGCATAAAGAAAAGATTTTCACGCAAAAGAAAATCATCAATA
385 TGAACTTTGATTTTAAGGAAAATAGGGCAAA-AAAAGATTTTCATGCAAAAGAAAATCATCAATA
*
2045964 TCATTTATCCTAATGAGGAGAATGTA
449 TCATTTATCCTAATGAGGAGAATGTG
* * * **
2045990 TTTATAGTGCCTAATCACTAAATGAATGAAGATTATTACAAGAATCCATGTTTGCCTCATTTGAG
1 TTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCTCATTTGAG
* * * * * *
2046055 G-AATGAACTTCGACTTTACAAAAATTTGTAGGAAAAAAACCTTTGTTGC-AATACCAAAGCATC
66 GCAA-AAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAA-ACCAAAGCATC
* * *
2046118 AATATGATGTATACTACTGAGAAGACTATGTTTATGGTGCATAATCCTGAAAAGAATAGGGATTA
129 AATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTA
* * * * ** * * *
2046183 GTTTGAGTATTCTTATTTATCAAATTTAAGAGACAAACTTTGACTCTATCAAAAATGATGGAAAA
194 GTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAA
* * *
2046248 AAAAGCTTTTTTTACGACACCAAAGCATCAATGTCATGTATCCTAAT
259 GAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT
2046295 CAATATCATG
Statistics
Matches: 5417, Mismatches: 899, Indels: 304
0.82 0.14 0.05
Matches are distributed among these distances:
457 5 0.00
458 30 0.01
459 211 0.04
460 119 0.02
461 8 0.00
464 1 0.00
465 1 0.00
466 1 0.00
468 1 0.00
469 1 0.00
470 4 0.00
471 153 0.03
472 170 0.03
473 79 0.01
474 701 0.13
475 1968 0.36
476 1085 0.20
477 551 0.10
478 100 0.02
479 227 0.04
480 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.32
Consensus pattern (474 bp):
TTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCTCATTTGAG
GCAAAAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAA
TATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGT
ATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAAGA
AAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCT
TCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGATGAACT
TTGATTTTAAGGAAAATAGGGCAAAAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTA
TCCTAATGAGGAGAATGTG
Found at i:2046298 original size:19 final size:19
Alignment explanation
Indices: 2046274--2046316 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
2046264 ACACCAAAGC
* *
2046274 ATCAATGTCATGTATCCTA
1 ATCAATATCATGTATCCAA
2046293 ATCAATATCATGTATCCAA
1 ATCAATATCATGTATCCAA
2046312 ATCAA
1 ATCAA
2046317 ATTTAAGACA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.40, C:0.21, G:0.07, T:0.33
Consensus pattern (19 bp):
ATCAATATCATGTATCCAA
Found at i:2047071 original size:20 final size:19
Alignment explanation
Indices: 2047025--2047081 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 19
2047015 TTGTGTCGAT
* *
2047025 ACATTGTATGGATACATGT
1 ACATTGTATCGATACATGG
*
2047044 TCATTGTATCGATACATGG
1 ACATTGTATCGATACATGG
2047063 ACAATTGTATCGATACATG
1 AC-ATTGTATCGATACATG
2047082 AAACTGGCAG
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
19 17 0.52
20 16 0.48
ACGTcount: A:0.32, C:0.14, G:0.19, T:0.35
Consensus pattern (19 bp):
ACATTGTATCGATACATGG
Found at i:2047149 original size:20 final size:21
Alignment explanation
Indices: 2047126--2047172 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 21
2047116 CGATACATGG
2047126 TACATTGTAT-AA-TGTATCGA
1 TACATTG-ATGAATTGTATCGA
2047146 TACA-TGATGAATTGTATCGA
1 TACATTGATGAATTGTATCGA
*
2047166 CACATTG
1 TACATTG
2047173 CTTGTAACGA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
18 2 0.09
19 4 0.17
20 15 0.65
21 2 0.09
ACGTcount: A:0.34, C:0.13, G:0.17, T:0.36
Consensus pattern (21 bp):
TACATTGATGAATTGTATCGA
Found at i:2047159 original size:27 final size:27
Alignment explanation
Indices: 2047111--2047162 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
2047101 TACCACTGTT
*
2047111 TGTATCGATACATGGTACATTGTATAA
1 TGTATCGATACATGATACATTGTATAA
2047138 TGTATCGATACATGATGA-ATTGTAT
1 TGTATCGATACATGAT-ACATTGTAT
2047163 CGACACATTG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.38
Consensus pattern (27 bp):
TGTATCGATACATGATACATTGTATAA
Found at i:2053000 original size:13 final size:13
Alignment explanation
Indices: 2052982--2053008 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
2052972 ACAACATTCC
2052982 TTGTATCGATACA
1 TTGTATCGATACA
2052995 TTGTATCGATACA
1 TTGTATCGATACA
2053008 T
1 T
2053009 GGGTTACTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:2055516 original size:20 final size:20
Alignment explanation
Indices: 2055493--2055542 Score: 66
Period size: 19 Copynumber: 2.5 Consensus size: 20
2055483 ACACCCAGAA
*
2055493 GTATCGATACAATATGCTTT
1 GTATCGATACAATATGCATT
* *
2055513 GTATCGATAC-ATGTTCATT
1 GTATCGATACAATATGCATT
2055532 GTATCGATACA
1 GTATCGATACA
2055543 TGGACAACTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
19 16 0.62
20 10 0.38
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.38
Consensus pattern (20 bp):
GTATCGATACAATATGCATT
Found at i:2057404 original size:476 final size:475
Alignment explanation
Indices: 2056383--2061924 Score: 6231
Period size: 476 Copynumber: 11.8 Consensus size: 475
2056373 TGAGCTTTCA
* * * * *
2056383 AATATGATGTATCCTAATGAGAAGATTGTGTTTATGGT-CCCAATCCTAAAAAGAATGGAGATT-
1 AATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTA
** * * *
2056446 GTATGAGTATTCATGTTTGTTGAATTTAAGAGACAAACTTTTACTCTATAAAAAATC-ATGGAAA
66 GTATGAGTATTCATGTTTGTCAAATTTAAGAGACAAACTTTGATTCTATCAAAAA-CGATGGAAA
* * *
2056510 GAAAAGCTTTTCTTGCGACACCGAAGCATTAATGTCATGTA-CCTTTAAT-AAGGGAATGTGTTT
130 GAAAAGCTTTTCTTGTGACA-CAAAGCATCAATGTCATGTATCC--TAATGAAGGGAATGTGTTT
* * * ** * * *
2056573 TGGAATCCCAATCTTGAAAAGAATGGAGACTATTGCGAGAATTAATGCTTGCCATATTTAAGGAA
192 TGGCATCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGA
*
2056638 TGAACTTTGATTTTAAGGAAAATAGGGCAAAGGAAAGATTTTCATGCAAAAGAAAATCATCAATA
257 TGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATA
* *
2056703 TCATTTATCCTATTGAGGAGAATGTATTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC
322 TCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC
* * * * *
2056768 TAGAATCCATATTTCTCTCATTTGAGGTACGAACTTAGACTTTACAACAATTGGTAGGAAAAAAG
387 TAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAG
2056833 CCTTTCTTGCGAAACTAAAGCATC
452 CCTTTCTTGCGAAACTAAAGCATC
* * * *
2056857 AATACGATGTATCCTAATGAGAAGACTGTGTTTATGGTCCCTAATCCTGAAAAGAATGGGGAATA
1 AATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTA
* * * *
2056922 GTATGAGTATTCATGTTTTTCAAATTCAAGAGACAAACTTTGATTCTATCAAAAACAATGGAAAC
66 GTATGAGTATTCATGTTTGTCAAATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAAAG
* *
2056987 AAAAGCTTTTCTTGCGACACAGAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTGG
131 AAAAGCTTTTCTTGTGACACA-AAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGG
** * * * *
2057052 TTTCCCAATCTT-AAATAGAATGGAGACTGTTATGAGAATTGATGCATGTCTTATTTTAGGGATG
195 CATCCCAATCTTGAAA-AGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATG
* * * * * ** *
2057116 AACTTTGATTTTAAGGAAACTAGGGCAAAGGAGAGA-TTTCTAGGCAAAAAAAAAATTGTCAATG
259 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTC-ATGC-AAAAGAAAATCATCAATA
* * *
2057180 TCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCGTAATTACGAAATGAATGAAGATCATTAC
322 TCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC
* * * * * ** *
2057245 TAGAATCCATGTTTCTTTCATTTGAGGTACGAGCTTAGACTTTACAAAAATTGATCAGAAAAAGG
387 TAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAG
* *
2057310 CCTTTCTTGCGAAACTAATGCACC
452 CCTTTCTTGCGAAACTAAAGCATC
* * * * **
2057334 AATATGATGTATCCTAATGAAAAGACTGTGTTTATGGTCCCTAAT-CTCGAAAATAATGTAGATT
1 AATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT-GAAAAGAATGGGGATT
* *
2057398 -GTATGAGTATTCATG-TTGTCGAATTTAAGAGACAAACTTTGATTCTATCAAAAAACTATGGAA
65 AGTATGAGTATTCATGTTTGTCAAATTTAAGAGACAAACTTTGATTCTATC-AAAAACGATGGAA
* * * * * * *
2057461 AAAAAAGCTTTTCTTGTGACACTGAAGCATTAATGTCGTGTA-CTTAACGAAGGGAATGCGTTTT
129 AGAAAAGCTTTTCTTGTGACAC-AAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTT
* * * * * * * *
2057525 AGCATCCCAATCCTGGAAAGAATGGAGACTGTTATGAGAATTGATACTTGTTTTATTTAACGGAT
193 GGCATCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGAT
* * * *
2057590 GAACTTGGATTTTAAGGAAAA-AAGGAACAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATA
258 GAACTTTGATTTTAAGGAAAATAGGGCA-AAGAAAAGATTTTCATGCAAAAGAAAATCATCAATA
*
2057654 TCATTTATCC---T-------A---G----T--TGCCTAATCACAAAATGAATAAAGATCATTAC
322 TCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC
* * *
2057700 TAAAATCCATGTTTGTCTCATTTGATGCACGAACTTAGACTTTAAAAAAATTGGTGGGAAAAAAG
387 TAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAG
* * * *
2057765 CCTTTCTTGAGAAACCAAAGTATT
452 CCTTTCTTGCGAAACTAAAGCATC
* * * *
2057789 AGTATGATATATCCTAACGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAACGGGGATTA
1 AATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTA
* * * * * *
2057854 GTGCT-TGTATTCATGTTTGTCAAATGTT-GGAGACAAACTTTGATTTTATCAAAAATGGTGGAA
66 GT-ATGAGTATTCATGTTTGTCAAAT-TTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAA
** * *
2057917 AGAAAAGCTTTTCTTGTGACACCAAAGCATCAATAACATATATGCTAATGAAGGGAATGTGTTTT
129 AGAAAAGCTTTTCTTGTGACA-CAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTT
* * * * *
2057982 GGC-TTCCAATCTTGAAAAGAATGGAGACTATTACGACAATCGAAGCCTGTCTTATTTAAGGGAT
193 GGCATCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGAT
* * *
2058046 GAACTTTGATTTTAAGGAAAATTGGGCAAGGAAAAGATTTTCACGCAAAAGAAAATCATCAATAT
258 GAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATAT
* * * * * * *
2058111 CATTTATCCTAATAAGAATAATGTGTTTATAGTGTCTAATCACAAAATGAATAAAAATCATTACC
323 CATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACT
* * * * * *
2058176 AGAATCCATGTTTCTCTCTTTTGAGGCACGGACTTAGACTTTACAAAAATTGATGTGAAAAATGC
388 AGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGC
2058241 CTTTCTTG-GAAATCTAAAGCATC
453 CTTTCTTGCGAAA-CTAAAGCATC
** * * * *
2058264 AATATGACATATCGTAAGGAGAAGACTGTGTTTATGGT-CCTAGATCCTGAAAAGAACGGGGATT
1 AATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTA-ATCCTGAAAAGAATGGGGATT
* * * * * * * *
2058328 -GTATGAGCATTCATGTTCGTCGAATTTCAGAGACAAATTTTGATTTTACCAAAAACTATGGAAA
65 AGTATGAGTATTCATGTTTGTCAAATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAAA
* *
2058392 GAAAAGCTTTTCTTGTGACACCGAAGCATTAATGTCATGTA-CCTTAAT-AAGGGAATGTG-TTT
130 GAAAAGCTTTTCTTGTGACA-CAAAGCATCAATGTCATGTATCC-TAATGAAGGGAATGTGTTTT
* *
2058454 -GCATCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCAATCCTTGTCTTATTTAAGGGAT
193 GGCATCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGAT
* *
2058518 GAACTTTGATTTTAAGGAAAATAGGGTCAAA-AAAAGATTTCCATGCAAAAGAAAATCATCAATG
258 GAACTTTGATTTTAAGGAAAATAGGG-CAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATA
* * *
2058582 TCATTTATCCTAACGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAGGATCATTTC
322 TCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC
* * * * * *
2058647 TAAAATCCATGTTTGTCTCATTTGAGACATGGACATAGACTTTTCAAAAATTGGTGGG-AAAAAG
387 TAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAG
* * * *
2058711 CCTTCCTAGTGAAACTAAAGCACC
452 CCTTTCTTGCGAAACTAAAGCATC
* * * * *
2058735 AATATGATGTATCCTAATGAGAAAACTATGTTTATAGTGCCCAATCCTGAAAAGAGTAGGGATTA
1 AATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTA
** * * * *
2058800 GTATGAGTATTCACATTTATCAAATTTAAGAGACAAACTTTGATTCTATCAAAAATGATTGAAAC
66 GTATGAGTATTCATGTTTGTCAAATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAAAG
* * * * * * *
2058865 AAAAGCTTTTCTTGCGACACCGAAGCATTAATGTCGTGTACCCTAAAGAAAGGAATGTGTTTTGG
131 AAAAGCTTTTCTTGTGACA-CAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGG
* * * * ***
2058930 CATCCCAATCTTGAAAAAAATGGAGACTGTTATGAGAGTCAATGCTTGTCTTATTTAACATAT-A
195 CATCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
* * * * * * ** *
2058994 GACTTTGACTTTAAAGAAAAGAAGGCAAAGGATAGATTTTCATGTGAAAG-AAATCGTCAATATC
260 -ACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATC
* * * * *
2059058 ATTTATCCTAAT-ATGCAAAATGTATTTATAGTTCTTAATCACAAAATGAATGAAGAATC-TTAC
324 ATTTATCCTAATGA-GGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG-ATCATTAC
* * ** ** * * *
2059121 TAGAATCCATGTTTGTCTCATTTAAGGCAC-AAGCATAGACTAAATGAAAATTCGTGAGAATAAA
387 TAGAATCCATGTTTGTCTCATTTGAGGCACGAA-CTTAGACTTTACAAAAATTGGTGGGAAAAAA
* * *
2059185 GCCGTTCTTACAAAAC-AAATGCATC
451 GCCTTTCTTGCGAAACTAAA-GCATC
* * ** * * *
2059210 AATATGATGTATCATAATGAGAAAACTATGAGTATGGTGCCTAATCTTGAAAGGAATGGGAATTA
1 AATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTA
* * ** * * * *
2059275 GCATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTATGACTCTATCAAAAACGGTGAAAAA
66 GTATGAGTATTCATGTTTGTCAAATTTAAGAGACAAACTTTGATTCTATCAAAAACGATG-GAAA
* * * * *
2059340 AAAAAGCTTTTCTTGTGATATAAAAGCATCAATGTCATGTATCCTAATGATGGGAATGTGTATTG
130 GAAAAGCTTTTCTTGTGACA-CAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTG
* * * * * * *
2059405 GCTTCCTAATCTTGAAACGAATGGAGACTATTAAGAGAATCGATACTTGTCTTAATTAAGGGATG
194 GCATCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATG
* *
2059470 AACTTTTATTTTAAGAAAAATAGGGCAAAG-AAA-A---TCAT-C--------A--A-C---ATC
259 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATC
* * *
2059515 ATTTATCATAATGAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAATAAAGATCATTACTA
324 ATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
* * * * * * *
2059580 AAATCCATGTTTCTCTAATTTAAGGTACGAACTTAGACTTTACAAAAATTTGTGGG-AAAAGGCC
389 GAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCC
*
2059644 TTTCTTGCTAAACTAAAGCATC
454 TTTCTTGCGAAACTAAAGCATC
* *
2059666 AATATGATGTATCCTATTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTA
1 AATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTA
* * * * * * *
2059731 GTTTGAGTATTCTTATTTATCAAATTTAAGAGACAAACTTTGACTCTATCAAAAATGATGGAAAA
66 GTATGAGTATTCATGTTTGTCAAATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAAAG
** * * * *
2059796 AAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTATCCTAATCAAGGGAAGGTATGTTGG
131 AAAAGCTTTTCTTGTGACA-CAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGG
* * * * * * *
2059861 CTTCCCAAAGT-TTG-AAACAATGGAGACTATTACGAAAATAGATACTTGTCTTATTTAAGGTAT
195 CATCCC-AA-TCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGAT
* * * * *
2059924 GAATTTTGATTTTAAGAAAAATAGGTCAAATG-AAAGATTTCCAT--AAAA-AAAATCATCATTA
258 GAACTTTGATTTTAAGGAAAATAGGGCAAA-GAAAAGATTTTCATGCAAAAGAAAATCATCAATA
* * *
2059985 TCATTTATCCTAATAAGGAGAATGTGTTAATAGTGCCTAATCACTAAATGAATGAAGATCATTAC
322 TCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC
* * * * *
2060050 TAGAATCCATATTTGTCTCATTTAAGGAACAAACTTAGACTTTACAAAAATTGGTGGGAAAAAAT
387 TAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAG
* * * * *
2060115 CTTTTCGTGTGAAGCCAAAGCA-C
452 CCTTTCTTGCGAAACTAAAGCATC
** * * *
2060138 AAATATCCTGTATTCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATAGGGATT
1 -AATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATT
*** * *** * * * * * *
2060203 AGTATGACCCTTCATGTATGTTTTATTTAAGAGAAAAACATTGATTCTACCAAAAATGGTGGGAA
65 AGTATGAGTATTCATGTTTGTCAAATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAAA
* * *
2060268 GAAAAGCTTTTCTTGTGACAGCAAAGCATCAATGTCATGTATCCTATTGAAAGGAATGTGTTGTG
130 GAAAAGCTTTTCTTGTGACA-CAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTG
* *
2060333 GCATCCCAATCTTGAAAAGAATGGAAACTGTTACGAGAATCGATGCTTGTCTTATTTAAAGGATG
194 GCATCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATG
* * * **
2060398 AACTTTGATTTTAAGAAAAATAGGGTAAAGAAAATATTTTCATGCAAAAGAAAATTGTCAATATC
259 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATC
* *
2060463 AATTATCCTAACGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
324 ATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
* * *
2060528 GGATCCATGTTTGGCTCTTTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCC
389 GAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCC
* * * *
2060593 TTTCTTTC-AAAATGAGAGGATC
454 TTTCTTGCGAAACT-AAAGCATC
* * * * * *
2060615 AATTTGATGTATCTTAATAAGAAGACTATGTTTATAGTGCCAAATCCTAAAAAGAATGGGGATTA
1 AATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTA
* * * * * *
2060680 GTATGAGT-TCTCAAGTTTTTCATATTTAAGAGACAAACTTTGATTCTATTAAAAACGGTGAAAA
66 GTATGAGTAT-TCATGTTTGTCAAATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAAA
* * * * * *
2060744 GAAGAGCTATTCTTGCGACACTAATGCATCAATGTCATGTATCCTAATGAAGGGCATGTGTTTCG
130 GAAAAGCTTTTCTTGTGACAC-AAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTG
* * * * * *
2060809 GCTTCCCAATCTT-AAAAGGAATAGAGAGTGTTACGACAATCGATGCTTGTCTTTTTTATGGGAT
194 GCATCCCAATCTTGAAAA-GAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGAT
* * * **
2060873 GAACTATGATTTTAAGGGAAATAGGGAAAAGAAAAG-TTTTCCATGCAAAAGAAAATCATTGATA
258 GAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTT-CATGCAAAAGAAAATCATCAATA
*
2060937 TCATTTATCCTAATGAAGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC
322 TCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC
* * * * *
2061002 TAGAATCCAGGTTTGTTTCATTTGAGGTACGAACTTAGACTTTACAAAAATTAGTGGGAAGAAAG
387 TAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAG
* * *
2061067 CCTTTCTTGCGAATCCAAGGCATC
452 CCTTTCTTGCGAAACTAAAGCATC
* *
2061091 AATATCG-TGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGG-C
1 AATAT-GATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAT-GGGGAT
* * * ** ** * *
2061154 TAGTATGACTATTCTTTTTTGTCTTATTTAAGAGTTAAACTTTGATTCTATCAGAAACGGTGGAA
64 TAGTATGAGTATTCATGTTTGTCAAATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAA
* * *
2061219 AGAAAAGTTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCTTAATTAAGGGAATGTGTTTT
129 AGAAAAGCTTTTCTTGTGACA-CAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTT
* *
2061284 GGCATCCTAATATTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAA-GGAT
193 GGCATCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGAT
* * * * * * * *
2061348 GAACTTTAATTTTGAGAAAAATGGGGTAAAGAAAATATTTTCATGCAATAGAAAATCATTAATAT
258 GAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATAT
* * * *
2061413 CATTTATCATAATGAGGAGAATGTGTTTATAGCGCCTAATCACAAAATGAATGAAAATCATTAGT
323 CATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACT
* * * * * * *
2061478 AGAATCCATGTTCGTCTTATTTGAGACATGAACTTAGTCTTTAAAAAAATTGGTGAGAAAAAAGC
388 AGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGC
*
2061543 CTCTT-TTGCGAAACGAAAGCATC
453 CT-TTCTTGCGAAACTAAAGCATC
* *
2061566 AATATGATGTGTCCTAATGAGAAGACTATGTTTATAGTGCCTAATCCTGAAAAGAATGGGGATTA
1 AATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTA
* *
2061631 GTATGAGCATTAATGTTTGTCAAATTTAAGAGACAAACTTTGATTCTATCAGAAATA-G-TGGAA
66 GTATGAGTATTCATGTTTGTCAAATTTAAGAGACAAACTTTGATTCTATCA-AAA-ACGATGGAA
* * * *
2061694 AGAAATGCTTTTCTTGTGACACCAAAGCATTAATGTCATGTATCCTAATTAAGCGAATGTGTTTT
129 AGAAAAGCTTTTCTTGTGACA-CAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTT
* *
2061759 GGCATCCTAATCTTGAAAAAAATGGAGACTGTTACGAGAATCGATG-TTGTCTTATTTAA-GGAT
193 GGCATCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGAT
* * *
2061822 GAACTTTAATTTTGAGGAAAATGGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATAT
258 GAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATAT
2061887 CATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
323 CATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
2061925 TAGATACCTC
Statistics
Matches: 4267, Mismatches: 686, Indels: 230
0.82 0.13 0.04
Matches are distributed among these distances:
455 284 0.07
456 306 0.07
457 156 0.04
458 5 0.00
459 1 0.00
460 4 0.00
461 1 0.00
463 1 0.00
464 1 0.00
466 2 0.00
468 1 0.00
469 2 0.00
471 78 0.02
472 433 0.10
473 298 0.07
474 395 0.09
475 942 0.22
476 1131 0.27
477 226 0.05
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.31
Consensus pattern (475 bp):
AATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTA
GTATGAGTATTCATGTTTGTCAAATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAAAG
AAAAGCTTTTCTTGTGACACAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGC
ATCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAA
CTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCAT
TTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGA
ATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTT
TCTTGCGAAACTAAAGCATC
Found at i:2061451 original size:158 final size:157
Alignment explanation
Indices: 2061242--2061924 Score: 436
Period size: 158 Copynumber: 4.3 Consensus size: 157
2061232 TTGTGACACC
* * * * *
2061242 AAAGCATCAATGTCATGTATCTTAATTAAGG-GAATGTGTTT-TGGCATCCTAATATTGAAAAGA
1 AAAGCATCAATATCATGTATCCTAA-TGAGGAGAATGTGTTTATAGC-GCCTAATATTGAAAAGA
2061305 ATGGAGACT-GTTACGAGAATCGATGCTTGTCTTATTTAAG-GATGAACTTTAATTTTGAGAAAA
64 ATGGAGACTAGTTACGAGAATCGATG-TTGTCTTATTTAAGAGATGAACTTTAATTTTGAGAAAA
2061368 ATGGGGTAAAGAAAATATTTTCATGCAATAGA
128 ATGGGG-AAAGAAAATATTTTCATGCAA-AGA
* * * * *
2061400 AAATCATTAATATCATTTATCATAATGAGGAGAATGTGTTTATAGCGCCTAATCA--CAAAATGA
1 AAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATAGCGCCTAAT-ATTGAAAA-GA
* * * * * * *
2061463 AT-GAAAATCA-TTA-GTAGAATCCATGTTCGTCTTATTTGAGACATGAAC-TTAGTCTTT-AAA
64 ATGGAGACT-AGTTACG-AGAATCGATGTT-GTCTTATTTAAGAGATGAACTTTAAT-TTTGAGA
***
2061523 AAAATTGGTGAGAAA-AAAGCCTCTTT--TGCGAAACG-
125 AAAA-TGG-G-GAAAGAAAATAT-TTTCATGC-AAA-GA
* * * * * * **
2061558 AAAGCATCAATATGATGTGTCCTAATGAGAAGACTATGTTTATAGTGCCTAATCCTGAAAAGAAT
1 AAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATAGCGCCTAATATTGAAAAGAAT
* * * * ** ** ** * * *
2061623 GGGGATTAG-TATGAGCATTAATGTTTGTCAAATTTAAGAGACAAACTTTGATTCTATCAGAAAT
66 GGAGACTAGTTACGAGAATCGATG-TTGTCTTATTTAAGAGATGAACTTTAATT-T-TGAGAAAA
* * * * * **
2061687 A-GTGGAAAG-AAATGCTTTTCTTGTGACACC
128 ATGGGGAAAGAAAAT-ATTTTCATG-CAAAGA
* * * * * * * * *
2061717 AAAGCATTAATGTCATGTATCCTAATTAAGCGAATGTGTTT-TGGCATCCTAATCTTGAAAAAAA
1 AAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATAGC-GCCTAATATTGAAAAGAA
*
2061781 TGGAGACT-GTTACGAGAATCGATGTTGTCTTATTTAAG-GATGAACTTTAATTTTGAGGAAAAT
65 TGGAGACTAGTTACGAGAATCGATGTTGTCTTATTTAAGAGATGAACTTTAATTTTGAGAAAAAT
*
2061844 GGGGCAAAGAAAAGATTTTCATGCAAAAGA
130 GGGG-AAAGAAAATATTTTCATGC-AAAGA
* * *
2061874 AAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
1 AAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATAGCGCCTA
2061925 TAGATACCTC
Statistics
Matches: 386, Mismatches: 100, Indels: 79
0.68 0.18 0.14
Matches are distributed among these distances:
155 6 0.02
156 4 0.01
157 86 0.22
158 172 0.45
159 104 0.27
160 8 0.02
161 6 0.02
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.32
Consensus pattern (157 bp):
AAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATAGCGCCTAATATTGAAAAGAAT
GGAGACTAGTTACGAGAATCGATGTTGTCTTATTTAAGAGATGAACTTTAATTTTGAGAAAAATG
GGGAAAGAAAATATTTTCATGCAAAGA
Found at i:2065189 original size:13 final size:13
Alignment explanation
Indices: 2065171--2065196 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2065161 CAATTTTTTG
2065171 TGTATCGATACAT
1 TGTATCGATACAT
2065184 TGTATCGATACAT
1 TGTATCGATACAT
2065197 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2067261 original size:158 final size:156
Alignment explanation
Indices: 2067099--2068401 Score: 478
Period size: 158 Copynumber: 8.2 Consensus size: 156
2067089 AGAAAATTAA
* * * *
2067099 CAATATCATTTATCCTAATAAAGAGATTGTGTTTATAGTGCCTAAACACAAAATCAATGAAGATC
1 CAATATCATGTATCCTAAT-AAGAGAATGTGTTTAT-GTGCCTAATCACAAAA-GAATGAAGATC
* *
2067164 ATTACT-AAAATCCATGTTTGTCTTATTTGAGACACAAACTTAGACTTTACTAAAATTGGTGGAA
63 ATTA-TGAGAATCCATGTTTGTCTTATTTAAGACACAAACTTAGACTTTACTAAAATTGGTGGAA
*
2067228 A-AAAAGCCTTT-CTTGTGAAACCAAAGCAT
127 AGAAAAG-CTTTCCTTGCGAAACCAAAGCAT
* * * * * * ** * *
2067257 CAATAACGTGGATCCTAATAAGAAGACTATGTTTATGGGTCCTAATCTTGAAAAGAATGGAGATT
1 CAATATCATGTATCCTAATAAG-AGAATGTGTTTATGTG-CCTAATC-ACAAAAGAATGAAGATC
* * * * * * * * **
2067322 AGTATGAGTATTCATGTTTATCTTATTTAAGAGACAAACTTTGA-TTCTA-TCAAAA-CGATATA
63 ATTATGAGAATCCATGTTTGTCTTATTTAAGACACAAACTTAGACTT-TACT-AAAATTGGTGGA
* * *
2067384 AAGAAAAGCTTTTCTTGTGACACCAAAGCAT
126 AAGAAAAGCTTTCCTTGCGAAACCAAAGCAT
* * *** *
2067415 CAATGTCATGTATCCTAATAAAGAGAATGTCTTT-TG-GCTTCTCAATGTTGAAAAGAATGGAGA
1 CAATATCATGTATCCTAAT-AAGAGAATGTGTTTATGTGC--CT-AAT-CACAAAAGAATGAAGA
* * * ** * * * *
2067478 -CTATTATGAGAATCGATGGTTGTCTTATTTAAGAAATGAACTTTGATTTTAAGC-AAAGTAGG-
61 TC-ATTATGAGAATCCATGTTTGTCTTATTTAAGACACAAACTTAGACTTT-A-CTAAAATTGGT
* * * * * * ** *
2067540 GTAAAGCAAAGATTTCCATACAAAAGGAAATCAT
123 GGAAAGAAAAGCTTTCCTTGCGAAACCAAAGCAT
* * ** *
2067574 CAATATCACT-AATCCTAATGAGGAGAATGTGTTTATAGTTACTAATCACAAAATGAATAAAGAT
1 CAATATCA-TGTATCCTAAT-AAGAGAATGTGTTTAT-GTGCCTAATCACAAAA-GAATGAAGAT
* * * *
2067638 CATTACT-AGAATCCATGTTTGT-TTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTAG
62 CATTA-TGAGAATCCATGTTTGTCTT-ATTTAAGACACAAACTTAGACTTTACTAAAATTGGT-G
*
2067701 GAAA-AAAAGCTTTGCTTGCGAAACCAAAGCAT
124 GAAAGAAAAGCTTTCCTTGCGAAACCAAAGCAT
* * *
2067733 CAATATCATGTATCCTAATGAGAAGACTATGTTTATCGTGCCTAATC-CTAAAAAGAATGAAGAT
1 CAATATCATGTATCCTAATAAG-AGAATGTGTTTAT-GTGCCTAATCAC--AAAAGAATGAAGAT
* * *** * * * * * * **
2067797 TAGTATGACCCTTCATGTATGTGTTA-TTAAGGATAAAAACTTTGA-TTCTA-TCAAAAACGGTG
62 CATTATGAGAATCCATGTTTGTCTTATTTAA-GACACAAACTTAGACTT-TACT-AAAATTGGTG
*
2067859 GAAAGAAAAGCTTTTCTTGC-AACACCAAAGCAT
124 GAAAGAAAAGCTTTCCTTGCGAA-ACCAAAGCAT
* * * * * * * * * ** * *
2067892 CAATGTTATGTA-CCTATTGAAGGGAATATATTT-TGGCTTCCCAGTCTGGAATAGAATAAAGA-
1 CAATATCATGTATCCTAAT-AAGAGAATGTGTTTAT-G-TGCCTAATC-ACAAAAGAATGAAGAT
* * * * * ** ** * ** * *
2067954 CTGTTACGGGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTA-ATTTTAAGAAAAAT-ATGG
62 C-ATTATGAGAATCCATGTTTGTCTTATTTAAGACACAAAC-TTAGACTTTACTAAAATTGGTGG
* * * * ** *
2068017 CAAAGAAAAAGATTTTCATGCAAAATAAAAACAT
125 -AAAG-AAAAGCTTTCCTTGCGAAACCAAAGCAT
** * * * *
2068051 CAATAAGATTTATCGTAATGAAGAGAATGTGTTTATAGTGCCAAATCACAACATGAATGAAGATC
1 CAATATCATGTATCCTAAT-AAGAGAATGTGTTTAT-GTGCCTAATCACAA-AAGAATGAAGATC
* * * ** *
2068116 ATTACT-AGAATCCATGTTTGTCTCATTTGAGGCACGCACTTAGACTTTA-TAAAAATTAGT-GA
63 ATTA-TGAGAATCCATGTTTGTCTTATTTAAGACACAAACTTAGACTTTACT-AAAATTGGTGGA
* * * *
2068178 GAA-AAATGCCTTT-CTTGCGGAACGAAAACAT
126 -AAGAAAAG-CTTTCCTTGCGAAACCAAAGCAT
* * * * **
2068209 CAATATGATGTATCCTACTAAGAAGACTATGTTTATGATGCCTAATC-CTAAAAAGAATGGGGAT
1 CAATATCATGTATCCTAATAAG-AGAATGTGTTTATG-TGCCTAATCAC--AAAAGAATGAAGAT
* ** ** ** * * *
2068273 TAGCATGACTATTTATGTTTGTCTTATTTAAGAGACAAACTTTGA-TTCTA-TAAAAAATGGTGG
62 CATTATGAGAATCCATGTTTGTCTTATTTAAGACACAAACTTAGACTT-TACT-AAAATTGGTGG
** * * *
2068336 AAAGAAGGGCTTTTCTTGCGACACCAAGGCAT
125 AAAGAAAAGCTTTCCTTGCGAAACCAAAGCAT
* *
2068368 CAATGTCATGTATCTTAATGATAG-GAATGTGTTT
1 CAATATCATGTATCCTAAT-A-AGAGAATGTGTTT
2068402 TGGCTTCCCA
Statistics
Matches: 836, Mismatches: 235, Indels: 147
0.69 0.19 0.12
Matches are distributed among these distances:
155 1 0.00
156 1 0.00
157 36 0.04
158 374 0.45
159 326 0.39
160 91 0.11
161 7 0.01
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.31
Consensus pattern (156 bp):
CAATATCATGTATCCTAATAAGAGAATGTGTTTATGTGCCTAATCACAAAAGAATGAAGATCATT
ATGAGAATCCATGTTTGTCTTATTTAAGACACAAACTTAGACTTTACTAAAATTGGTGGAAAGAA
AAGCTTTCCTTGCGAAACCAAAGCAT
Found at i:2067969 original size:476 final size:474
Alignment explanation
Indices: 2066662--2068524 Score: 2241
Period size: 476 Copynumber: 3.9 Consensus size: 474
2066652 GCACGTTGCA
* *
2066662 ATAGTGCCTAATCACAAAATAAAGGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCA
1 ATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCA
* ** * *
2066727 CGAACTTAGACTTTACTAAAATTGGTGAGAGGAGAGCCTTTCTTGC-AAAACAAATGCATCAATA
66 CGAACTTAGACTTTACAAAAATTGGTGAGAAAAAAGCCTTTCTTGCGAAACCAAA-GCATCAATA
* * * * *
2066791 TGATGTATCCTAATGAGAAGACAATGTTTACAGTGCCTAATCCTGAAAAGAATGTG-GATTAGTA
130 TCATGTATCCTAATAAGAAGACTATGTTTA-TGTGCCTAATCCTAAAAAGAATG-GAGATTAGTA
* * * *
2066855 TGACTATTCATGTCTATCTTATTTAAGAGATAAACTTTGACTCTATAAAAAACGGTGGAAAAAAA
193 TGACTATTCATGTTTATCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTGGAAAGAAA
* * *
2066920 AGCTTTTCATGTGACACCAAAGCATCAATGTCATGTATCCTACTGAAGGG--TG--TTTGGCTTC
258 AGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTTTTTGGCTTC
* *
2066981 CCAATCTTGAAAA-AA-AATGAGACTTTTACGAGAATC-ATTGCTTGTCTTATTTAAAGGATAAA
323 CCAATCTTGAAAAGAATAA--AGACTGTTACGAGAATCGA-TGCTTGTCTTATTTAAAGGATGAA
* * * * * * *
2067043 CTTTAATTTTAAGGAAAATAGGGTAAAAAAAATATTTTCATACATAAGAAAATTAACAATATCAT
385 CTTTAATTTTAAGAAAAATAGGGCAAAGAAAAGATTTTCATACAAAAGAAAATCATCAATATCAT
* *
2067108 TTATCCTAATAAAGAGATTGTGTTT
450 TTATCCTAATGAAGAGAATGTGTTT
* * * * *
2067133 ATAGTGCCTAAACACAAAATCAATGAAGATCATTACTAAAATCCATGTTTGTCTTATTTGAGACA
1 ATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCA
* * *
2067198 CAAACTTAGACTTTACTAAAATTGGTG-GAAAAAAAGCCTTTCTTGTGAAACCAAAGCATCAATA
66 CGAACTTAGACTTTACAAAAATTGGTGAG-AAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATA
* * * * * *
2067262 ACGTGGATCCTAATAAGAAGACTATGTTTATGGGTCCTAATCTTGAAAAGAATGGAGATTAGTAT
130 TCATGTATCCTAATAAGAAGACTATGTTTATGTG-CCTAATCCTAAAAAGAATGGAGATTAGTAT
* * * **
2067327 GAGTATTCATGTTTATCTTATTTAAGAGACAAACTTTGATTCTAT-CAAAACGATATAAAGAAAA
194 GACTATTCATGTTTATCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTGGAAAGAAAA
* * *
2067391 GCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATAAAGAGAATGTCTTTTGGCTTC
259 GCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGT-TTTTGGCTTC
* * ** * * * *
2067456 TCAATGTTGAAAAGAATGGAGACTATTATGAGAATCGATGGTTGTCTTATTT-AAGAAATGAACT
323 CCAATCTTGAAAAGAATAAAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAAG-GATGAACT
* * * * * * * * *
2067520 TTGATTTTAAGCAAAGTAGGGTAAAGCAAAGATTTCCATACAAAAGGAAATCATCAATATCACTA
387 TTAATTTTAAGAAAAATAGGGCAAAGAAAAGATTTTCATACAAAAGAAAATCATCAATATCATTT
*
2067585 ATCCTAATGAGGAGAATGTGTTT
452 ATCCTAATGAAGAGAATGTGTTT
** * *
2067608 ATAGTTACTAATCACAAAATGAATAAAGATCATTACTAGAATCCATGTTTGTTTCATTTGAGGCA
1 ATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCA
2067673 CGAACTTAGACTTTACAAAAATTGGT-AGGAAAAAAAG-CTTTGCTTGCGAAACCAAAGCATCAA
66 CGAACTTAGACTTTACAAAAATTGGTGA-G-AAAAAAGCCTTT-CTTGCGAAACCAAAGCATCAA
* *
2067736 TATCATGTATCCTAATGAGAAGACTATGTTTATCGTGCCTAATCCTAAAAAGAATGAAGATTAGT
128 TATCATGTATCCTAATAAGAAGACTATGTTTAT-GTGCCTAATCCTAAAAAGAATGGAGATTAGT
** * * * * * *
2067801 ATGACCCTTCATGTATGTGTTA-TTAAGGATAAAAACTTTGATTCTATCAAAAACGGTGGAAAGA
192 ATGACTATTCATGTTTATCTTATTTAA-GAGACAAACTTTGATTCTATAAAAAACGGTGGAAAGA
* * * *
2067865 AAAGCTTTTCTTGCAACACCAAAGCATCAATGTTATGTA-CCTATTGAAGGGAATATATTTTGGC
256 AAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGT-TTTTGGC
* * * * *
2067929 TTCCCAGTCTGGAATAGAATAAAGACTGTTACGGGAATCGATGCTTGTCTTATTTAAGGGATGAA
320 TTCCCAATCTTGAAAAGAATAAAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAAGGATGAA
* * * * **
2067994 CTTTAATTTTAAGAAAAATATGGCAAAGAAAAAGATTTTCATGCAAAATAAAAACATCAATAAGA
385 CTTTAATTTTAAGAAAAATAGGGCAAAG-AAAAGATTTTCATACAAAAGAAAATCATCAATATCA
*
2068059 TTTATCGTAATGAAGAGAATGTGTTT
449 TTTATCCTAATGAAGAGAATGTGTTT
* *
2068085 ATAGTGCCAAATCACAACATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCA
1 ATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCA
* * * * * * *
2068150 CGCACTTAGACTTTATAAAAATTAGTGAGAAAAATGCCTTTCTTGCGGAACGAAAACATCAATAT
66 CGAACTTAGACTTTACAAAAATTGGTGAGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATAT
* * * *
2068215 GATGTATCCTACTAAGAAGACTATGTTTATGATGCCTAATCCTAAAAAGAATGGGGATTAGCATG
131 CATGTATCCTAATAAGAAGACTATGTTTATG-TGCCTAATCCTAAAAAGAATGGAGATTAGTATG
* * * **
2068280 ACTATTTATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAATGGTGGAAAGAAGGG
195 ACTATTCATGTTTATCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTGGAAAGAAAAG
* *
2068345 CTTTTCTTGCGACACCAAGGCATCAATGTCATGTATCTTAATGATA-GGAATGTGTTTTGGCTTC
260 CTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGA-AGGGAATGT-TTTTGGCTTC
* ** * * * * *
2068409 CCAATATTGAAAAGAATGGAGACTGTTACAAGAATCAATACTTGTCTTATTTAAAGGATTAACCT
323 CCAATCTTGAAAAGAATAAAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAAGGATGAACTT
* *
2068474 TGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTTCATGCCAAAA-AAAATC
388 TAATTTTAAGAAAAATAGGGCAAAGAAAAGATTTTCAT-ACAAAAGAAAATC
2068525 TGTTAGGATC
Statistics
Matches: 1181, Mismatches: 183, Indels: 51
0.83 0.13 0.04
Matches are distributed among these distances:
470 63 0.05
471 199 0.17
472 9 0.01
474 3 0.00
475 215 0.18
476 395 0.33
477 295 0.25
478 2 0.00
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.31
Consensus pattern (474 bp):
ATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCA
CGAACTTAGACTTTACAAAAATTGGTGAGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATAT
CATGTATCCTAATAAGAAGACTATGTTTATGTGCCTAATCCTAAAAAGAATGGAGATTAGTATGA
CTATTCATGTTTATCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTGGAAAGAAAAGC
TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTTTTTGGCTTCCCA
ATCTTGAAAAGAATAAAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAAGGATGAACTTTAA
TTTTAAGAAAAATAGGGCAAAGAAAAGATTTTCATACAAAAGAAAATCATCAATATCATTTATCC
TAATGAAGAGAATGTGTTT
Found at i:2068871 original size:19 final size:20
Alignment explanation
Indices: 2068847--2068899 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 20
2068837 ATCGATGCAT
**
2068847 TGTATCGATACATGTTC-AC
1 TGTATCGATACATGCACAAC
* *
2068866 TGTATCGATGCATGCACAAT
1 TGTATCGATACATGCACAAC
2068886 TGTATCGATACATG
1 TGTATCGATACATG
2068900 AAAATGGTAG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
19 14 0.50
20 14 0.50
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (20 bp):
TGTATCGATACATGCACAAC
Found at i:2070574 original size:19 final size:20
Alignment explanation
Indices: 2070530--2070579 Score: 75
Period size: 19 Copynumber: 2.5 Consensus size: 20
2070520 AGACCCAAAT
2070530 GTATCGATACATATTGCTTA
1 GTATCGATACATATTGCTTA
* *
2070550 GTATCGATACATGTT-CTTG
1 GTATCGATACATATTGCTTA
2070569 GTATCGATACA
1 GTATCGATACA
2070580 CACTGAATTG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
19 14 0.50
20 14 0.50
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.38
Consensus pattern (20 bp):
GTATCGATACATATTGCTTA
Found at i:2079820 original size:19 final size:20
Alignment explanation
Indices: 2079775--2079826 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
2079765 TTACAAGCCA
*
2079775 ATGTATCGATACATTTTGGG
1 ATGTATCGATACATCTTGGG
*
2079795 ATGTATCGATACATCTTGTG
1 ATGTATCGATACATCTTGGG
2079815 -TGTATCGATACA
1 ATGTATCGATACA
2079827 AACAGTTAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 12 0.40
20 18 0.60
ACGTcount: A:0.27, C:0.13, G:0.21, T:0.38
Consensus pattern (20 bp):
ATGTATCGATACATCTTGGG
Found at i:2082697 original size:28 final size:28
Alignment explanation
Indices: 2082657--2082715 Score: 109
Period size: 28 Copynumber: 2.1 Consensus size: 28
2082647 GTCTAATTTA
2082657 AGGACTAAACTTCAATTTTAAGGAAAAT
1 AGGACTAAACTTCAATTTTAAGGAAAAT
*
2082685 AGGACTAAACTTCAATTTTATGGAAAAT
1 AGGACTAAACTTCAATTTTAAGGAAAAT
2082713 AGG
1 AGG
2082716 GTAAAGAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.44, C:0.10, G:0.17, T:0.29
Consensus pattern (28 bp):
AGGACTAAACTTCAATTTTAAGGAAAAT
Found at i:2086600 original size:948 final size:948
Alignment explanation
Indices: 2080917--2090137 Score: 11196
Period size: 948 Copynumber: 9.7 Consensus size: 948
2080907 TGAGCTTACA
* * * * * * * * **
2080917 CATTTGAGGCACGAACTTAGACTTTACCAAAATTGGTGAGAAGAAAGCCTTT-CTTGCAAAATGA
1 CATTAGAGGCATGAACTTAGACTGTACAAAAATTTGTGGGAAAAAAGCCTTTAC-TGCGAAACCA
* * * *
2080981 AAGCATCGATATCG-TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAATAAT
65 AAGCATCAATAT-GATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTGAAAA-GAT
* * * * * *
2081045 -GGGGATTAGTATGACTATTTATGTTTGCCTT--ATTGAAGAGATAAACTTTGATTCTATCAAAA
128 CGTGGAATAGCATGAGTATTCATGTTTG--TTGAATT-AAGAGACAAACTTTGATTCTATCAAAA
* * ** * * * * **
2081107 ACGGTGGAAAGAAAGGCTTTTCTTGTAACAC-CAAGGCATCAATGCCATGTATCCTAATGAAAAG
190 ACGGTGGAAAGAAAAGATTTTCTTGCGACACTGAA-GCATCAATGTCATGGATCCTGATGAAGGG
* * * * * * * *
2081171 AATGTCTTTTGGCTTCCTAATCTTGAAAAGAATGAAGACTGTTATGAGAATCAATGCTTGTCTTT
254 AATGTGTTTTGGCTTCCCAATCTAGAAAAGAATGGAGACTGTTATGAGAATCGATGCATGTCGTA
* * ** *
2081236 TTTAAAGGATGAACTTTGATTTTAAGGAAAATAAAGCAAAGAAAAGATTTCCAT-ACAAAAGAAA
319 TTTAAGGGATGAACTTTGATTTTAAGGAAAACAGGGCAAAGAAATGATTTCCATGACAAAAGAAA
* * * *
2081300 ATCAT-AATTTCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATAAATG-
384 ATCATCAATATCATTTATCCTAATGAAGAGAATGTGTTTATAATGCCTAATCACAAAATGAATGA
* ** * * * * *
2081363 ----AA-TACCAGAATCCACATTCATCTCCTTTAAGACACGAACTTAGACTTTACAAAA-TTCGT
449 AAATAATTACTAGAATCCATGTTCGTCTCATTTGAGACACCAACTTAGACTTTACAAAATTTGGT
* * * * *
2081422 GGGAAAAAAGCCTTTCTTGCGAAACCAAAGTATCAATATCATGTATCCTAATGAGAAGACTATGT
514 GGGAAAAAAGCCTTTCTTGTGACACCAAAGCATCAATATGATGTATCCTAATAAGAAGACTATGT
* * * * * * * * ***
2081487 TTATGGTGCCTAATCCTGAATAGAACGGGGATTAGCATGAGTATTCATGTTTT-TTGAATTTAAG
579 TTAAGGTGTCTAACCCTTAAAAGAA-TGGGATTAGTATGAGTACTCAT-TTTTGTCCTATTTAAG
* * *
2081551 AGACAAACTTT-ATTCTATCAAAAACGGT-GAAAAGAAAAGATTTTCTTGCT-ACACCGAAGCAT
642 AGACAAACTTTGATTCTATCAAAAATGGTGGAAAA-AAAAGCTTTTCTTG-TGACATCGAAGCAT
* * * * ** * ** * *
2081613 CAATGTCATATATCCAGATGAA-GGAAATGTGTTTTGGCTTCCCAATCCAGAAAATAATGGAGAT
705 CAATGTCATGTATCC-TATTAAGGGGAATGTGTTTTGAATACCCAATCTTGAAAAGAATGGAGAC
* * * * * ** ** * *
2081677 TGTTA--CGAGAAATGGTACTTGTCTTATTCAAGGGAG-AAACTTTGATTTGAACGAAAATAGGG
769 CGTTATGTGAGCAAT-G--CTTGCCTTATTTAAGGG-GTGGACTTTGATTTTCAGGAAAATAGGA
* * *
2081739 CAACAAATAGATTTCCATGCAAAAGAAAATCATCAATATCTTTTATCCTAATGAAGAAAATGTGT
830 CAA-AAA-AGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGT
* * * *
2081804 TTATAGTGCCTAGTCACAAAATGAATGAAGATCTTTACTAAAATCCATGTTTGTCT
893 TTATAGTGCCTAATCACAAAATGAATGAAAATCATTACTAGAATCCATGTTTGTCT
* * * * *
2081860 CATTTGAGGCACGAACATAGACTATACAAAAA-TTGTTGGGAAAAAAACCTTT-CTTGCGAAACC
1 CATTAGAGGCATGAACTTAGACTGTACAAAAATTTG-TGGGAAAAAAGCCTTTAC-TGCGAAACC
* * * *
2081923 AAAGCAACAATATGATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTGACCCTTAAAAGAAT
64 AAAGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAG-AT
* * * * * *
2081988 -G-GGGATAAGTATGAGTATTCATGTTGGTCGTATTTAAGAGACAAACTTTGAATCTATCAAAAA
128 CGTGGAAT-AGCATGAGTATTCATGTTTGTTG-AATTAAGAGACAAACTTTGATTCTATCAAAAA
* * * ** ** *
2082051 TGG-AGAAAAAAAAGCCTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT-ATTG-AGGAG
191 CGGTGGAAAGAAAAGATTTTCTTGCGACACTGAAGCATCAATGTCATGGATCCTGA-TGAAGG-G
* * * * *
2082113 AATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGTCTTA
254 AATGTGTTTTGGCTTCCCAATCTAGAAAAGAATGGAGACTGTTATGAGAATCGATGCATGTCGTA
* * * * *
2082178 TTTAAGAGATGAACTTTGATTTTAAGAAAAAAAGGGAAAAGGAAA-GATTTTCATG-CAAAAGAA
319 TTTAAGGGATGAACTTTGATTTTAAGGAAAACAGGGCAAA-GAAATGATTTCCATGACAAAAGAA
*
2082241 AATCATCAATATCATTTATCCTAAT-AAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
383 AATCATCAATATCATTTATCCTAATGAA-GAGAATGTGTTTATAATGCCTAATCACAAAATGAAT
* * * * * ** * *
2082305 GAAGATCATTGCGAGAATCCAGGTTTATGTCATTTGA-AGCA-CGACTTAGACTTTACTAAAA-T
447 GAAAATAATTACTAGAATCCATGTTCGTCTCATTTGAGA-CACCAACTTAGACTTTAC-AAAATT
** * * ** * *
2082367 TGGCAGGAAGAATGCCTTTCTTACGA-ATCCAAAGCAT-AGATATCG-TGTATCCTAATGAGATG
510 TGGTGGGAAAAAAGCCTTTCTTGTGACA-CCAAAGCATCA-ATAT-GATGTATCCTAATAAGAAG
** * * * * *
2082429 ACTATGTTTGTGGTGGCTAA-TCTTGAAAAGAATGGAGATTAGTATGA-TAATTCATGTTTGTCA
572 ACTATGTTTAAGGTGTCTAACCCTT-AAAAGAATGG-GATTAGTATGAGT-ACTCATTTTTGTCC
* * * * * * ** *
2082492 TATTTAAGTGACAAACTTTGATTCTTTTAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACCCCA
634 TATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAAAAAAGCTTTTCTTGTGACATCG
* * ** * * *
2082557 AAGCATCAATGTCATGTATCCTAATGAGGGGAATGTGTTTTGGCTTCCCAATCTTGAAATGAATA
699 AAGCATCAATGTCATGTATCCTATTAAGGGGAATGTGTTTTGAATACCCAATCTTGAAAAGAATG
** * * **
2082622 GAGACTATTACGAGAATCGATGC-TTGTCTAATTTAAGGACTAAACTTCAATTTTAAGGAAAATA
764 GAGACCGTTA--TG--T-GA-GCAATG-C----TT---G-C----CTT--A-TTTAAGG--GGT-
*
2082686 GGACTAAACTTCAATTTT-ATGGAAAATAGGGTA-AAGAAAAGATTTCCATGCAAAAGAAAATCA
804 GGACT----TT-GATTTTCA-GGAAAATA-GG-ACAA-AAAAGATTTCCATGCAAAAGAAAATCA
* * *
2082749 TCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAACATGAATGAAGAT
860 TCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAAAT
2082814 CATTACTAGAATCTC-TGTTTGTCT
925 CATTACTAGAATC-CATGTTTGTCT
* ** * *
2082838 CAATT-GAGGCACGAACTTACTCTTTACAGAAA-TTGATGGGAAAAAAAGCCTTT-CTTGCGAAA
1 C-ATTAGAGGCATGAACTTAGACTGTACAAAAATTTG-TGGG-AAAAAAGCCTTTAC-TGCGAAA
* * * ** *
2082900 CTAAGGCATCAATATGATGTATCTTAATAAGAAGACTATGTTTACAGTGCCTAAT-CTAGAAAAA
62 CCAAAGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCT-GAAAAG
* * **
2082964 AACAG-GGATTAGCATGAGTATTCATGTTTGTCAAATTTAAGAGACAAA-TTTGGATTCTATCAA
126 ATC-GTGGAATAGCATGAGTATTCATGTTTGTTGAA-TTAAGAGACAAACTTT-GATTCTATCAA
* * * * ** * * * *
2083027 AAACGGTGGAAAGAAGAGCTTTTTTTGTGACACCAAAGCATCAATGTTATGTATCCTAATGAGGG
188 AAACGGTGGAAAGAAAAGATTTTCTTGCGACACTGAAGCATCAATGTCATGGATCCTGATGAAGG
* * * * * *
2083092 GAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGAATTGATGCTTGTCTT
253 GAATGTGTTTTGGCTTCCCAATCTAGAAAAGAATGGAGACTGTTATGAGAATCGATGCATGTCGT
** * *
2083157 ATTTAA-GGACTGAACTTCAATTTTAAGGAAAATAGGGCAAAAAAATGATTTCCATG-CAAAAGA
318 ATTTAAGGGA-TGAACTTTGATTTTAAGGAAAACAGGGCAAAGAAATGATTTCCATGACAAAAGA
* * **
2083220 AAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA-AAGTGCCTAATTACAGCATGAA
382 AAATCATCAATATCATTTATCCTAATGAAGAGAATGTGTTTATAA-TGCCTAATCACAAAATGAA
* * * * * * * * *
2083284 TGGAGATCATTACTAGAATCTATGTTTGTCTCAATTGAGGCACGAACTTACACTTTACAGAAATT
446 TGAAAATAATTACTAGAATCCATGTTCGTCTCATTTGAGACACCAACTTAGACTTTACA-AAATT
* * * * * * *
2083349 T-ATGGGAAAAAAGCCTTTCTTGCGAAACCAAGGCATTAACATGATGTATCCTAATGAGAAGACT
510 TGGTGGGAAAAAAGCCTTTCTTGTGACACCAAAGCATCAATATGATGTATCCTAATAAGAAGACT
* * * * * * * * **
2083413 ATGTTTATGGTGCCTAATCCTAAAAAGAATGAGGATTAGCATGAGTATTTATGTTTGTCGAATTT
575 ATGTTTAAGGTGTCTAACCCTTAAAAGAATG-GGATTAGTATGAGTACTCATTTTTGTCCTATTT
* * * * **
2083478 TAGAGAGAAACTTTGATTCTTTCAATAATGGTGGAAAGAAAAGAGC-TTT-TTCCGACA-CTGAA
639 AAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAA-AAAA-AGCTTTTCTTGTGACATC-GAA
* * * * *
2083540 GCATCAA-GTCATGTATCCTGATGAA-GGGAATGTGTTTTGACTTCCCAATGTT--TAAGAATGG
701 GCATCAATGTCATGTATCCT-ATTAAGGGGAATGTGTTTTGAATACCCAATCTTGAAAAGAATGG
* * * * * * * * * * * *
2083601 AGACTGTTACGAGAATCGATGCATGGCTCATTT-TGGGGATGAACTTTGATTTTAAGGAAAATAT
765 AGACCGTTATGTG-AGCAATGCTTGCCTTATTTAAGGGG-TGGACTTTGATTTTCAGGAAAATAG
** *
2083665 G-CAAAGAAAGGATTTTAATGCAAAAGAAAATCATCAATATCATTTTTCCTAATGAGGAGAATGT
828 GACAAA-AAA-GATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
* * * *
2083729 GTTTATAGTTCCTAATCACAAAATGAATGAAGATCACTACTAGAATCAATGTTTGT-T
891 GTTTATAGTGCCTAATCACAAAATGAATGAAAATCATTACTAGAATCCATGTTTGTCT
* * ** * * ** *
2083786 GCATTTA-TGGCATGAACTTAGACTTTACAAAAATTT-ACGGATAGAAATCCTTTTTTGCAAAAC
1 -CA-TTAGAGGCATGAACTTAGACTGTACAAAAATTTGTGGGA-AAAAAGCCTTTACTGCGAAAC
*** * * *
2083849 CAAAGCATCAATGCCATGTATCCTAATAAGAAGACTATATTTATGGTGCCTAATCCTAAAAATAT
63 CAAAGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAT
* * * * * * * * *
2083914 TGGGGAATA-TATGACTATTTATGTTTGTCTTATTTAAGAGAGAAATTTTGATTCTATCAAAAAC
128 CGTGGAATAGCATGAGTATTCATGTTTGT-TGAATTAAGAGACAAACTTTGATTCTATCAAAAAC
* * ** * * *
2083978 GGTGGAAAGAAAGGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAGGGGAAT
192 GGTGGAAAGAAAAGATTTTCTTGCGACACTGAAGCATCAATGTCATGGATCCTGATGAAGGGAAT
* * * * ** *
2084043 GTGTTTTGGCTTCCTAATCTTGAAAAGAAGGGAGACTATTGCGAGAATTGATGCATGTCGTATTT
257 GTGTTTTGGCTTCCCAATCTAGAAAAGAATGGAGACTGTTATGAGAATCGATGCATGTCGTATTT
* * * *** *
2084108 AAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTTGTGA-GAAA-AAAATC
322 AAGGGATGAACTTTGATTTTAAGGAAAACAGGGCAAAGAAATGATTTCCATGACAAAAGAAAATC
* *
2084171 ATCAATATCATTTATCCTAACG-AGCAGAATTGTGTTTATAGTGCCTAATCACAAAATGAAT-AA
387 ATCAATATCATTTATCCTAATGAAG-AGAA-TGTGTTTATAATGCCTAATCACAAAATGAATGAA
* * * * * * *
2084234 AGATCATTACTATAATCCATGTTCATCTCTTTTGAGACACAAACTTAGACTTTACAAAAATTCGT
450 A-ATAATTACTAGAATCCATGTTCGTCTCATTTGAGACACCAACTTAGACTTTACAAAATTTGGT
* * * * *
2084299 GGGAAAAAAACCCTTT-TTGGCGAAACCAAAGCACCAATATGATGTATCCTAATGAGAAGACTAT
514 GGG-AAAAAAGCCTTTCTT-GTGACACCAAAGCATCAATATGATGTATCCTAATAAGAAGACTAT
* * * * * * ** **
2084363 GTTTATGGT-TCCTAA-TCTTAAAAAGAACGGGGATTAGCAAGAGTATTCAGGTTTGTCGAATTT
577 GTTTAAGGTGT-CTAACCCTT-AAAAGAA-TGGGATTAGTATGAGTACTCATTTTTGTCCTATTT
* * * **
2084426 -AGCTAG-CAAACCTTGATTCTATCAAAAATGGTGGAAAGAAAAGATTTTCTTACGACA-CTGAA
639 AAG--AGACAAACTTTGATTCTATCAAAAATGGTGGAAAAAAAAGCTTTTCTTGTGACATC-GAA
* ** * * *** *
2084488 GCATCAATGTCATGTATCCTGATGAA-GGGAATGTGTTTTGGCTTCTCAATCCAAAAAAGAATAG
701 GCATCAATGTCATGTATCCT-ATTAAGGGGAATGTGTTTTGAATACCCAATCTTGAAAAGAATGG
* * * ** * * * *
2084552 AGACTGTTACGAGAAAAAATGTTTGTCTTATTTAAGGGAT-GACCTTTGATTTTCAAGAAAATAG
765 AGACCGTTATGTG-AGCAATGCTTGCCTTATTTAAGGGGTGGA-CTTTGATTTTCAGGAAAATAG
* *
2084616 GGCAAAGAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGT
828 GACAAAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGT
* * * *
2084681 TTATAATGCCTAATCACAAAATAAAT-AAAAACTATTACTAAAATCCATGTTTGTCT
893 TTATAGTGCCTAATCACAAAATGAATGAAAATC-ATTACTAGAATCCATGTTTGTCT
* * * *
2084737 CATTAGAGGCACGAACTTAGACTATACAAAAATTTGTGGGAAAAAAACCTTTATTGCGAAACCAA
1 CATTAGAGGCATGAACTTAGACTGTACAAAAATTTGTGGGAAAAAAGCCTTTACTGCGAAACCAA
* *
2084802 AGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAACGT
66 AGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGATCGT
* ** * * * *
2084867 TGTTTAGCAT-AGTATTCATGTTTGTCGAATTTAGGAGACAAACTTTGATTCTATGAAAAACGAT
131 GGAATAGCATGAGTATTCATGTTTGTTGAA-TTAAGAGACAAACTTTGATTCTATCAAAAACGGT
* * * * *
2084931 GGAAAGAAAAGTTTTTCTTGCGGCACCGAAGCTTCAATGTCATGGATCCCGATGAAGGGAATGTG
195 GGAAAGAAAAGATTTTCTTGCGACACTGAAGCATCAATGTCATGGATCCTGATGAAGGGAATGTG
* * * * * * * * **
2084996 TTTTGGCTTCCTAATCCAAAAAAGAATGGAAACTATTACGAGAATTGATGCATGTCATATTTATT
260 TTTTGGCTTCCCAATCTAGAAAAGAATGGAGACTGTTATGAGAATCGATGCATGTCGTATTTAAG
* *
2085061 GGATGAACTTTGATTTTAAGGGAAACAGGGCAAAGAAATGATTTTCATGACAAAAGAAAATCATC
325 GGATGAACTTTGATTTTAAGGAAAACAGGGCAAAGAAATGATTTCCATGACAAAAGAAAATCATC
* * * * * * *
2085126 AATAGCATTTATCCTAATGAGGAGAATGTGTTTATAGTTCCTAATAACAAAATGGATGAAGATAA
390 AATATCATTTATCCTAATGAAGAGAATGTGTTTATAATGCCTAATCACAAAATGAATGAAAATAA
* *
2085191 TTACTAGAATCCATGTTCGTCTCATTTAAGACACC-A---AGACTTCACAAAATTTGGTGGGAAA
455 TTACTAGAATCCATGTTCGTCTCATTTGAGACACCAACTTAGACTTTACAAAATTTGGTGGGAAA
* * *
2085252 AAAGCCTTTCTTGAGACACCAAAGCATCAATATGATGCACCCTAATAAGAAGACTATGTTTAAGG
520 AAAGCCTTTCTTGTGACACCAAAGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTAAGG
* * *
2085317 TGTCTAACCCTTAAAAGAATGGGATTAGTATAAGTACTTATTTTTGTCCTATTTAAGAGACAAAA
585 TGTCTAACCCTTAAAAGAATGGGATTAGTATGAGTACTCATTTTTGTCCTATTTAAGAGACAAAC
*
2085382 TTTGATTTTATCAAAAATGGTGGAAAAAAAAGCTTTTCTTGTGACATCGAAGCATCAATGTCATG
650 TTTGATTCTATCAAAAATGGTGGAAAAAAAAGCTTTTCTTGTGACATCGAAGCATCAATGTCATG
2085447 TATCCTATTAAGGGGAATGTGTTTTGAATACCCAATCTTGAAAAGAATGGAGACCGTTATGTGAG
715 TATCCTATTAAGGGGAATGTGTTTTGAATACCCAATCTTGAAAAGAATGGAGACCGTTATGTGAG
2085512 CAATGCTTGCCTTATTTAAGGGGTGGACTTTGATTTTCAGGAAAATAGGACAAAAAAGATTTCCA
780 CAATGCTTGCCTTATTTAAGGGGTGGACTTTGATTTTCAGGAAAATAGGACAAAAAAGATTTCCA
* *
2085577 TGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGATTGTGTTTATAGTGCCTAATCAC
845 TGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC
*
2085642 AAAATGAATGAAAATCATTACTAGAATCCATATTTGTCT
910 AAAATGAATGAAAATCATTACTAGAATCCATGTTTGTCT
* *
2085681 CATTAGAGGTATGAACTTAGACTGTACAAAAATTTGTGGGAAAAAAGCCTTTACTGCGAAACCAC
1 CATTAGAGGCATGAACTTAGACTGTACAAAAATTTGTGGGAAAAAAGCCTTTACTGCGAAACCAA
*
2085746 AGCATCAATATGATGTATCCTAACAAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGATCGT
66 AGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGATCGT
** *
2085811 TCAATAGCATGAGTATTCATGTTTGTTGAATTAGGAGACAAACTTTGATTCTATCAAAAACGGTG
131 GGAATAGCATGAGTATTCATGTTTGTTGAATTAAGAGACAAACTTTGATTCTATCAAAAACGGTG
*
2085876 GAAAGAAAAGATTTTCTTGCGACACTGAAGCTTCAATGTCATGGATCCTGATGAAGGGAATGTGT
196 GAAAGAAAAGATTTTCTTGCGACACTGAAGCATCAATGTCATGGATCCTGATGAAGGGAATGTGT
* * *
2085941 TTTGGCTTCCCAATCTAGAAAATAATGGAGACTGTTGTGGGAATCGATGCATGTCGTATTTAAGG
261 TTTGGCTTCCCAATCTAGAAAAGAATGGAGACTGTTATGAGAATCGATGCATGTCGTATTTAAGG
* *
2086006 GATGAACTTTGATTTTGAGGGAAACAGGGCAAAGAAATGATTTCCATGACAAAAGAAAATCATCA
326 GATGAACTTTGATTTTAAGGAAAACAGGGCAAAGAAATGATTTCCATGACAAAAGAAAATCATCA
*
2086071 ATATCATTTATCCTATTGAAGAGAATGTGTTTATAATGCCTAATCACAAAATGAATGAAAATAAT
391 ATATCATTTATCCTAATGAAGAGAATGTGTTTATAATGCCTAATCACAAAATGAATGAAAATAAT
2086136 TACTAGAATCCATGTTCGTCTCATTTGAGACACCAACTTAGACTTTACAAAATTTGGTGGGAAAA
456 TACTAGAATCCATGTTCGTCTCATTTGAGACACCAACTTAGACTTTACAAAATTTGGTGGGAAAA
* *
2086201 AAGCCTTTGTTGTGACACTAAAGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTAAGGT
521 AAGCCTTTCTTGTGACACCAAAGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTAAGGT
2086266 GTCTAACCCTTAAAAGAATGGGATTAGTATGAGTACTCATTTTTGTCCTATTTAAGAGACAAACT
586 GTCTAACCCTTAAAAGAATGGGATTAGTATGAGTACTCATTTTTGTCCTATTTAAGAGACAAACT
*
2086331 TTGATTCTATCGAAAATGGTGGAAAAAAAAGCTTTTCTTGTGACATCGAAGCATCAATGTCATGT
651 TTGATTCTATCAAAAATGGTGGAAAAAAAAGCTTTTCTTGTGACATCGAAGCATCAATGTCATGT
2086396 ATCCTATTAAGGGGAATGTGTTTTGAATACCCAATCTTGAAAAGAATGGAGACCGTTATGTGAGC
716 ATCCTATTAAGGGGAATGTGTTTTGAATACCCAATCTTGAAAAGAATGGAGACCGTTATGTGAGC
2086461 AATGCTTGCCTTATTTAAGGGGTGGACTTTGATTTTCAGGAAAATAGGACAAAAAAGATTTCCAT
781 AATGCTTGCCTTATTTAAGGGGTGGACTTTGATTTTCAGGAAAATAGGACAAAAAAGATTTCCAT
* * *
2086526 GCAAAAGAAAATCATTAATATCATTTATCCCAATGAGGAGATTGTGTTTATAGTGCCTAATCACA
846 GCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACA
*
2086591 AAATGAATGAAAATCATTACTAGAATCCATATTTGTCT
911 AAATGAATGAAAATCATTACTAGAATCCATGTTTGTCT
* *
2086629 CATTAGAGGTATGAACTTAGACTGTACAAAAATTTGTGGGAAAAAAGCCTTTACTGCGAAACCAC
1 CATTAGAGGCATGAACTTAGACTGTACAAAAATTTGTGGGAAAAAAGCCTTTACTGCGAAACCAA
* *
2086694 AGCATCAATATGATGTATCCTAACAAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGACCGT
66 AGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGATCGT
** *
2086759 TCAATAGCATGAGTATTCATGTTTGTTGAATTAGGAGACAAACTTTGATTCTATCAAAAACGGTG
131 GGAATAGCATGAGTATTCATGTTTGTTGAATTAAGAGACAAACTTTGATTCTATCAAAAACGGTG
*
2086824 GAAAGAAAAGATTTTCTTGCGACACTGAAGCTTCAATGTCATGGATCCTGATGAAGGGAATGTGT
196 GAAAGAAAAGATTTTCTTGCGACACTGAAGCATCAATGTCATGGATCCTGATGAAGGGAATGTGT
* * *
2086889 TTTGGCTTCCCAATCTAGAAAATAATGGAGACTGTTGTGGGAATCGATGCATGTCGTATTTAAGG
261 TTTGGCTTCCCAATCTAGAAAAGAATGGAGACTGTTATGAGAATCGATGCATGTCGTATTTAAGG
* *
2086954 GATGAACTTTGATTTTGAGGGAAACAGGGCAAAGAAATGATTTCCATGACAAAAGAAAATCATCA
326 GATGAACTTTGATTTTAAGGAAAACAGGGCAAAGAAATGATTTCCATGACAAAAGAAAATCATCA
*
2087019 ATATCATTTATCCTATTGAAGAGAATGTGTTTATAATGCCTAATCACAAAATGAATGAAAATAAT
391 ATATCATTTATCCTAATGAAGAGAATGTGTTTATAATGCCTAATCACAAAATGAATGAAAATAAT
2087084 TACTAGAATCCATGTTCGTCTCATTTGAGACACCAACTTAGACTTTACAAAATTTGGTGGGAAAA
456 TACTAGAATCCATGTTCGTCTCATTTGAGACACCAACTTAGACTTTACAAAATTTGGTGGGAAAA
* *
2087149 AAGCCTTTGTTGTGACACTAAAGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTAAGGT
521 AAGCCTTTCTTGTGACACCAAAGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTAAGGT
*
2087214 GTCTAACCCTTAAAAGAATGGGATTAGTATGAGTACTCATTTTTCTCCTATTTAAGAGACAAACT
586 GTCTAACCCTTAAAAGAATGGGATTAGTATGAGTACTCATTTTTGTCCTATTTAAGAGACAAACT
*
2087279 TTGATTCTATCGAAAATGGTGGAAAAAAAAGCTTTTCTTGTGACATCGAAGCATCAATGTCATGT
651 TTGATTCTATCAAAAATGGTGGAAAAAAAAGCTTTTCTTGTGACATCGAAGCATCAATGTCATGT
2087344 ATCCTATTAAGGGGAATGTGTTTTGAATACCCAATCTTGAAAAGAATGGAGACCGTTATGTGAGC
716 ATCCTATTAAGGGGAATGTGTTTTGAATACCCAATCTTGAAAAGAATGGAGACCGTTATGTGAGC
2087409 AATGCTTGCCTTATTTAAGGGGTGGACTTTGATTTTCAGGAAAATAGGACAAAAAAGATTTCCAT
781 AATGCTTGCCTTATTTAAGGGGTGGACTTTGATTTTCAGGAAAATAGGACAAAAAAGATTTCCAT
* * *
2087474 GCAAAAGAAAATCATTAATATCATTTATCCCAATGAGGAGATTGTGTTTATAGTGCCTAATCACA
846 GCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACA
*
2087539 AAATGAATGAAAATCATTACTAGAATCCATATTTGTCT
911 AAATGAATGAAAATCATTACTAGAATCCATGTTTGTCT
* *
2087577 CATTAGAGGTATGAACTTAGACTGTACAAAAATTTGTGGGAAAAAAGCCTTTACTGCGAAACCAC
1 CATTAGAGGCATGAACTTAGACTGTACAAAAATTTGTGGGAAAAAAGCCTTTACTGCGAAACCAA
* *
2087642 AGCATCAATATGATGTATCCTAACAAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGACCGT
66 AGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGATCGT
** *
2087707 TCAATAGCATGAGTATTCATGTTTGTTGAATTAGGAGACAAACTTTGATTCTATCAAAAACGGTG
131 GGAATAGCATGAGTATTCATGTTTGTTGAATTAAGAGACAAACTTTGATTCTATCAAAAACGGTG
*
2087772 GAAAGAAAAGATTTTCTTGCGACACTGAAGCTTCAATGTCATGGATCCTGATGAAGGGAATGTGT
196 GAAAGAAAAGATTTTCTTGCGACACTGAAGCATCAATGTCATGGATCCTGATGAAGGGAATGTGT
* * *
2087837 TTTGGCTTCCCAATCTAGAAAATAATGGAGACTGTTGTGGGAATCGATGCATGTCGTATTTAAGG
261 TTTGGCTTCCCAATCTAGAAAAGAATGGAGACTGTTATGAGAATCGATGCATGTCGTATTTAAGG
* *
2087902 GATGAACTTTGATTTTGAGGGAAACAGGGCAAAGAAATGATTTCCATGACAAAAGAAAATCATCA
326 GATGAACTTTGATTTTAAGGAAAACAGGGCAAAGAAATGATTTCCATGACAAAAGAAAATCATCA
*
2087967 ATATCATTTATCCTATTGAAGAGAATGTGTTTATAATGCCTAATCACAAAATGAATGAAAATAAT
391 ATATCATTTATCCTAATGAAGAGAATGTGTTTATAATGCCTAATCACAAAATGAATGAAAATAAT
2088032 TACTAGAATCCATGTTCGTCTCATTTGAGACACCAACTTAGACTTTACAAAATTTGGTGGGAAAA
456 TACTAGAATCCATGTTCGTCTCATTTGAGACACCAACTTAGACTTTACAAAATTTGGTGGGAAAA
* *
2088097 AAGCCTTTGTTGTGACACTAAAGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTAAGGT
521 AAGCCTTTCTTGTGACACCAAAGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTAAGGT
2088162 GTCTAACCCTTAAAAGAATGGGATTAGTATGAGTACTCATTTTTGTCCTATTTAAGAGACAAACT
586 GTCTAACCCTTAAAAGAATGGGATTAGTATGAGTACTCATTTTTGTCCTATTTAAGAGACAAACT
*
2088227 TTGATTCTATCGAAAATGGTGGAAAAAAAAGCTTTTCTTGTGACATCGAAGCATCAATGTCATGT
651 TTGATTCTATCAAAAATGGTGGAAAAAAAAGCTTTTCTTGTGACATCGAAGCATCAATGTCATGT
2088292 ATCCTATTAAGGGGAATGTGTTTTGAATACCCAATCTTGAAAAGAATGGAGACCGTTATGTGAGC
716 ATCCTATTAAGGGGAATGTGTTTTGAATACCCAATCTTGAAAAGAATGGAGACCGTTATGTGAGC
2088357 AATGCTTGCCTTATTTAAGGGGTGGACTTTGATTTTCAGGAAAATAGGACAAAAAAGATTTCCAT
781 AATGCTTGCCTTATTTAAGGGGTGGACTTTGATTTTCAGGAAAATAGGACAAAAAAGATTTCCAT
* *
2088422 GCAAAAGAAAATCATCAATATCATTTATCCCAATGAGGAGATTGTGTTTATAGTGCCTAATCACA
846 GCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACA
*
2088487 AAATGAATGAAAATCATTACTAGAATCCATATTTGTCT
911 AAATGAATGAAAATCATTACTAGAATCCATGTTTGTCT
*
2088525 CATTAGAGGTATGAACTTAGACTGTACAAAAATTTGTGGGAAAAAAGCCTTTACTGCGAAACCAA
1 CATTAGAGGCATGAACTTAGACTGTACAAAAATTTGTGGGAAAAAAGCCTTTACTGCGAAACCAA
* ** *
2088590 AGCATCAAGATGATGTATCCTAACGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGACCGT
66 AGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGATCGT
** *
2088655 TCAATAGCATGAGTATTCATGTTTGTTGAATTAGGAGACAAACTTTGATTCTATCAAAAACGGTG
131 GGAATAGCATGAGTATTCATGTTTGTTGAATTAAGAGACAAACTTTGATTCTATCAAAAACGGTG
*
2088720 GAAAGAAAAGATTTTCTTGCGACACTGAAGCTTCAATGTCATGGATCCTGATGAAGGGAATGTGT
196 GAAAGAAAAGATTTTCTTGCGACACTGAAGCATCAATGTCATGGATCCTGATGAAGGGAATGTGT
* * *
2088785 TTTGGCTTCCCAATCTAGAAAATAATGGAGACTGTTGTGGGAATCGATGCATGTCGTATTTAAGG
261 TTTGGCTTCCCAATCTAGAAAAGAATGGAGACTGTTATGAGAATCGATGCATGTCGTATTTAAGG
* *
2088850 GATGAACTTTGATTTTGAGGGAAACAGGGCAAAGAAATGATTTCCATGACAAAAGAAAATCATCA
326 GATGAACTTTGATTTTAAGGAAAACAGGGCAAAGAAATGATTTCCATGACAAAAGAAAATCATCA
2088915 ATATCATTTATCCTAATGAAGAGAATGTGTTTATAATGCCTAATCACAAAATGAATGAAAATAAT
391 ATATCATTTATCCTAATGAAGAGAATGTGTTTATAATGCCTAATCACAAAATGAATGAAAATAAT
2088980 TACTAGAATCCATGTTCGTCTCATTTGAGACACCAACTTAGACTTTACAAAATTTGGTGGGAAAA
456 TACTAGAATCCATGTTCGTCTCATTTGAGACACCAACTTAGACTTTACAAAATTTGGTGGGAAAA
* *
2089045 AAGCCTTTGTTGTGACACTAAAGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTAAGGT
521 AAGCCTTTCTTGTGACACCAAAGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTAAGGT
2089110 GTCTAACCCTTAAAAGAATGGGATTAGTATGAGTACTCATTTTTGTCCTATTTAAGAGACAAACT
586 GTCTAACCCTTAAAAGAATGGGATTAGTATGAGTACTCATTTTTGTCCTATTTAAGAGACAAACT
* * *
2089175 TTGATTCTATCGAAAATGGTGGAAAGAAAAGCTTTTCTTGTGACACCGAAGCATCAATGTCATGT
651 TTGATTCTATCAAAAATGGTGGAAAAAAAAGCTTTTCTTGTGACATCGAAGCATCAATGTCATGT
* * *
2089240 ATCCTATTAAGGGGAATGTGTTTTTG-ATACCTAATCTTGAAAAGAATGGAGACAGTTATGCGAG
716 ATCCTATTAAGGGGAATGTG-TTTTGAATACCCAATCTTGAAAAGAATGGAGACCGTTATGTGAG
* * * * * *
2089304 CAATGCTTGCCTTATTTAAGGGATAGACTTTGATTTTTTAAGGAAAGTAGGGCGAAGGAAAGATT
780 CAATGCTTGCCTTATTTAAGGGGTGGACTTTGA--TTTTCAGGAAAATAGGAC-AA-AAAAGATT
* * * *
2089369 TCCATGCAAAAGAAAATAATCAATATCTTTTATCCTAATGAGGAGAATGTGTTTAGAGTGCGTAA
841 TCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
* * *
2089434 TCACAAAAAGGATGAAGAA-CATTACTAGAATCAATGTTTGTCT
906 TCACAAAATGAATGAA-AATCATTACTAGAATCCATGTTTGTCT
* * * * * * * *
2089477 CATTTGAGGCACGAACATAGATTTTAC---CATTGGTGGGAAGAAAGCCTTT-CTTGCGAAACCA
1 CATTAGAGGCATGAACTTAGACTGTACAAAAATTTGTGGGAAAAAAGCCTTTAC-TGCGAAACCA
* * * * * * *
2089538 AAGCATCGATATCG-TGTATCCTAATGAGAAGACTATGCTTATGGTACCAAATACTTAAAAGAAT
65 AAGCATCAATAT-GATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAG-AT
* * * * *
2089602 -G-GGAATTAGCAAGAGTATTCATGTTTGTCGAATTTAAGTGACAAACCTTGATTCTATTAAAAA
128 CGTGGAA-TAGCATGAGTATTCATGTTTGTTGAA-TTAAGAGACAAACTTTGATTCTATCAAAAA
** * *
2089665 CGGTGGAAAGAAAAGATTTTCTTATGACA-TCGAAGCATCAATGTCATGCATCATGATGAAGGGA
191 CGGTGGAAAGAAAAGATTTTCTTGCGACACT-GAAGCATCAATGTCATGGATCCTGATGAAGGGA
* * ** * ** *
2089729 ATGTGTTTTGGCTTCCCAATCCAGAAAAGAGTAAAGACTGTTATAAGAAAT-GATGTTTGTCTTA
255 ATGTGTTTTGGCTTCCCAATCTAGAAAAGAATGGAGACTGTTATGAG-AATCGATGCATGTCGTA
*
2089793 TTTAAGGGATGAACTTTGATTTTCAA-GAAAATAGGGCAAA-AAA-GATTTCCATG-CAAAAGAA
319 TTTAAGGGATGAACTTTGATTTT-AAGGAAAACAGGGCAAAGAAATGATTTCCATGACAAAAGAA
* * * * * * * * *
2089854 AATCGTCGATGTCATTTATCCTAATTAGGAGAATGTGTTTATAGTGCCTAATCATAAAATAAATT
383 AATCATCAATATCATTTATCCTAATGAAGAGAATGTGTTTATAATGCCTAATCACAAAATGAATG
* * * * * * ** * *
2089919 AAAATCATTAATAGAATCCATGTTTGTCTCATTAGAGGCACGAACTTAGACTACACAAAAATTAG
448 AAAATAATTACTAGAATCCATGTTCGTCTCATTTGAGACACCAACTTAGACTTTACAAAATTTGG
* * * * * * *
2089984 TGGGAAAAAAG-CGTTCCTGTGAAACCAAAGCGTCAATATGATGGATCCTAATGAGAAGAATATG
513 TGGGAAAAAAGCCTTTCTTGTGACACCAAAGCATCAATATGATGTATCCTAATAAGAAGACTATG
* * * * * * ** * * ** **
2090048 TTCATGGTGCCTAATCCTGAAAAGAACGTTAATTAGCATGAGTA-TCCATGTTTGTCGAATTTGG
578 TTTAAGGTGTCTAACCCTTAAAAGAATG-GGATTAGTATGAGTACT-CATTTTTGTCCTATTTAA
2090112 GAGACAAACTTTGATTCTATCAAAAA
641 GAGACAAACTTTGATTCTATCAAAAA
2090138 CAGTAGAAAG
Statistics
Matches: 7431, Mismatches: 670, Indels: 350
0.88 0.08 0.04
Matches are distributed among these distances:
941 3 0.00
942 164 0.02
943 209 0.03
944 582 0.08
945 159 0.02
946 178 0.02
947 499 0.07
948 3401 0.46
949 428 0.06
950 690 0.09
951 138 0.02
952 162 0.02
953 3 0.00
955 5 0.00
956 2 0.00
957 5 0.00
958 4 0.00
959 3 0.00
961 2 0.00
962 1 0.00
966 1 0.00
967 3 0.00
969 2 0.00
970 6 0.00
973 6 0.00
974 3 0.00
976 1 0.00
977 3 0.00
978 165 0.02
979 135 0.02
980 286 0.04
981 165 0.02
982 14 0.00
983 3 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.30
Consensus pattern (948 bp):
CATTAGAGGCATGAACTTAGACTGTACAAAAATTTGTGGGAAAAAAGCCTTTACTGCGAAACCAA
AGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGATCGT
GGAATAGCATGAGTATTCATGTTTGTTGAATTAAGAGACAAACTTTGATTCTATCAAAAACGGTG
GAAAGAAAAGATTTTCTTGCGACACTGAAGCATCAATGTCATGGATCCTGATGAAGGGAATGTGT
TTTGGCTTCCCAATCTAGAAAAGAATGGAGACTGTTATGAGAATCGATGCATGTCGTATTTAAGG
GATGAACTTTGATTTTAAGGAAAACAGGGCAAAGAAATGATTTCCATGACAAAAGAAAATCATCA
ATATCATTTATCCTAATGAAGAGAATGTGTTTATAATGCCTAATCACAAAATGAATGAAAATAAT
TACTAGAATCCATGTTCGTCTCATTTGAGACACCAACTTAGACTTTACAAAATTTGGTGGGAAAA
AAGCCTTTCTTGTGACACCAAAGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTAAGGT
GTCTAACCCTTAAAAGAATGGGATTAGTATGAGTACTCATTTTTGTCCTATTTAAGAGACAAACT
TTGATTCTATCAAAAATGGTGGAAAAAAAAGCTTTTCTTGTGACATCGAAGCATCAATGTCATGT
ATCCTATTAAGGGGAATGTGTTTTGAATACCCAATCTTGAAAAGAATGGAGACCGTTATGTGAGC
AATGCTTGCCTTATTTAAGGGGTGGACTTTGATTTTCAGGAAAATAGGACAAAAAAGATTTCCAT
GCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACA
AAATGAATGAAAATCATTACTAGAATCCATGTTTGTCT
Found at i:2089381 original size:476 final size:472
Alignment explanation
Indices: 2080917--2090168 Score: 10239
Period size: 476 Copynumber: 19.5 Consensus size: 472
2080907 TGAGCTTACA
* * * **
2080917 CATTTGAGGCACGAACTTAGACTTTACCAAAA-TTGGTGAGAAGAAAGCCTTTCTTGCAAAATGA
1 CATTTGAGGCACGAACTTAGACTTTA-CAAAATTTGGTGGGAAAAAAGCCTTTCTTGCGAAACCA
* * *
2080981 AAGCATCGATATCG-TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT-CTTGAAAATAA
65 AAGCATCAATAT-GATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTT-AAAAGAA
* * * * * * *
2081044 TGGGGATTAGTATGACTATTTATGTTTGCCTTATTGAAGAGATAAACTTTGATTCTATCAAAAAC
128 T-GGGATTAGCATGAGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAAC
* ** * **
2081109 GGTGGAAAGAAAGGCTTTTCTTGTAACACC-AAGGCATCAATGCCATGTATCCTAATGAAAAGAA
192 GGTGGAAAGAAAAGCTTTTCTTGCGACACCGAA-GCATCAATGTCATGTATCCT-ATGAAGGGAA
* * * * * *
2081173 TGTCTTTTGGCTTCCTAATCTTGAAAAGAATGAAGACTGTTATGAGAATCAATGCTTGTCTTTTT
255 TGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGCG-AGCAATGCTTGTCTTATT
* ** *
2081238 TAAAGGATGAACTTTGATTTTAAGGAAAATAAAGCAAAGAAAAGATTTCCATACAAAAGAAAATC
319 TAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAA-AAAAGATTTCCATGCAAAAGAAAATC
* *
2081303 AT-AATTTCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATAAATG---A
383 ATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAAA
* ** **
2081364 --A-TACCAGAATCCACATTCATCT
448 TCATTACTAGAATCCATGTTTGTCT
* * * *
2081386 CCTTTAAGACACGAACTTAGACTTTACAAAA-TTCGTGGGAAAAAAGCCTTTCTTGCGAAACCAA
1 CATTTGAGGCACGAACTTAGACTTTACAAAATTTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAA
* * * * * *
2081450 AGTATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAATAGAACGG
66 AGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTTAAAAGAA-TG
* * *
2081515 GGATTAGCATGAGTATTCATGTTTTTTGAATTTAAGAGACAAACTTT-ATTCTATCAAAAACGGT
130 GGATTAGCATGAGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGT
* * * * * *
2081579 GAAAAGAAAAGATTTTCTTGCTACACCGAAGCATCAATGTCATATATCCAGATGAAGGAAATGTG
195 GGAAAGAAAAGCTTTTCTTGCGACACCGAAGCATCAATGTCATGTATCC-TATGAAGGGAATGTG
** * * * *
2081644 TTTTGGCTTCCCAATCCAGAAAATAATGGAGATTGTTA--CGAGAAATGGTACTTGTCTTATTCA
259 TTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGCGAGCAAT-G--CTTGTCTTATTTA
* * *
2081707 AGGGA-GAAACTTTGATTTGAACGAAAATAGGGCAACAAATAGATTTCCATGCAAAAGAAAATCA
321 AGGGATG-AACTTTGATTTTAAGGAAAATAGGGCAA-AAAAAGATTTCCATGCAAAAGAAAATCA
* * * * *
2081771 TCAATATCTTTTATCCTAATGAAGAAAATGTGTTTATAGTGCCTAGTCACAAAATGAATGAAGAT
384 TCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAAAT
* *
2081836 CTTTACTAAAATCCATGTTTGTCT
449 CATTACTAGAATCCATGTTTGTCT
* * * * *
2081860 CATTTGAGGCACGAACATAGACTATACAAAAATTGTTGGGAAAAAAACCTTTCTTGCGAAACCAA
1 CATTTGAGGCACGAACTTAGACTTTACAAAATTTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAA
* * *
2081925 AGCAACAATATGATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTGACCCTTAAAAGAATGG
66 AGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTTAAAAGAAT-G
* * * * *
2081990 GGATAAGTATGAGTATTCATGTTGGTCGTATTTAAGAGACAAACTTTGAATCTATCAAAAATGG-
130 GGATTAGCATGAGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGT
* * * *
2082054 AGAAAAAAAAGCCTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTG-AGGAGAATGT
195 GGAAAGAAAAGCTTTTCTTGCGACACCGAAGCATCAATGTCATGTATCCTA-TGAAGG-GAATGT
* * *
2082118 GTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAA
258 GTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGCG-AGCAATGCTTGTCTTATTTAA
* * * *
2082183 GAGATGAACTTTGATTTTAAGAAAAAAAGGG-AAAAGGAAAGATTTTCATGCAAAAGAAAATCAT
322 GGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAA--AAAGATTTCCATGCAAAAGAAAATCAT
* *
2082247 CAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATC
385 CAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAAATC
* * * * *
2082312 ATTGCGAGAATCCAGGTTTATGT
450 ATTACTAGAATCCATGTTTGTCT
* ** * * * *
2082335 CATTTGAAGCACG-ACTTAGACTTTACTAAAA-TTGGCAGGAAGAATGCCTTTCTTACGAATCCA
1 CATTTGAGGCACGAACTTAGACTTTAC-AAAATTTGGTGGGAAAAAAGCCTTTCTTGCGAAACCA
* * * *
2082398 AAGCAT-AGATATCG-TGTATCCTAATGAGATGACTATGTTTGTGGTGGCTAAT-CTTGAAAAGA
65 AAGCATCA-ATAT-GATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTT-AAAAGA
* * * * *
2082460 ATGGAGATTAGTATGA-TAATTCATGTTTGTCATATTTAAGTGACAAACTTTGATTCTTTTAAAA
127 ATGG-GATTAGCATGAGT-ATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAA
* * *
2082524 ACGGTGGAAAGAAAAGCTTTTCTTGCGACCCCAAAGCATCAATGTCATGTATCCTAATGAGGGGA
190 ACGGTGGAAAGAAAAGCTTTTCTTGCGACACCGAAGCATCAATGTCATGTATCCT-ATGAAGGGA
* * * * *
2082589 ATGTGTTTTGGCTTCCCAATCTTGAAATGAATAGAGACTATTACGAGAATCGATGC-TTGTCTAA
254 ATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTA--TG---CGA-GCAATG-C---
* ** * *
2082653 TTTAAGGACTAAACTTCAATTTTAAGGAAAATAGGACTAAACTTCAATTTTATGGAAAATAGGGT
309 -TT---G--T---CTT--A-TTTAA-G------GGA-TGAACTTTGATTTTAAGGAAAATAGGGC
*
2082718 AAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTT
354 AAA-AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTT
* *
2082783 TATAGTGCCTAATCACAACATGAATGAAGATCATTACTAGAATCTC-TGTTTGTCT
418 TATAGTGCCTAATCACAAAATGAATGAAAATCATTACTAGAATC-CATGTTTGTCT
* ** * *
2082838 CAATTGAGGCACGAACTTACTCTTTACAGAAA-TTGATGGGAAAAAAAGCCTTTCTTGCGAAACT
1 CATTTGAGGCACGAACTTAGACTTTACA-AAATTTGGTGGG-AAAAAAGCCTTTCTTGCGAAACC
* * ** * *
2082902 AAGGCATCAATATGATGTATCTTAATAAGAAGACTATGTTTACAGTGCCTAAT-CTAGAAAAAAA
64 AAAGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCT-TAAAAGAA
* **
2082966 CAGGGATTAGCATGAGTATTCATGTTTGTCAAATTTAAGAGACAAA-TTTGGATTCTATCAAAAA
128 -TGGGATTAGCATGAGTATTCATGTTTGTCGTATTTAAGAGACAAACTTT-GATTCTATCAAAAA
* * * * * *
2083030 CGGTGGAAAGAAGAGCTTTTTTTGTGACACCAAAGCATCAATGTTATGTATCCTAATGAGGGGAA
191 CGGTGGAAAGAAAAGCTTTTCTTGCGACACCGAAGCATCAATGTCATGTATCCT-ATGAAGGGAA
* *
2083095 TGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTATTA--CGAGAATTGATGCTTGTCTTA
255 TGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGCGAGCA---ATGCTTGTCTTA
**
2083158 TTTAA-GGACTGAACTTCAATTTTAAGGAAAATAGGGCAAAAAAATGATTTCCATGCAAAAGAAA
317 TTTAAGGGA-TGAACTTTGATTTTAAGGAAAATAGGGCAAAAAAA-GATTTCCATGCAAAAGAAA
* * ** *
2083222 ATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTAAAGTGCCTAATTACAGCATGAATGG
380 ATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
* *
2083287 AGATCATTACTAGAATCTATGTTTGTCT
445 AAATCATTACTAGAATCCATGTTTGTCT
* * *
2083315 CAATTGAGGCACGAACTTACACTTTACAGAAATTT-ATGGGAAAAAAGCCTTTCTTGCGAAACCA
1 CATTTGAGGCACGAACTTAGACTTTACA-AAATTTGGTGGGAAAAAAGCCTTTCTTGCGAAACCA
* * * * *
2083379 AGGCATTAACATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATG
65 AAGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTTAAAAGAATG
* * * * * * *
2083444 AGGATTAGCATGAGTATTTATGTTTGTCGAATTTTAGAGAGAAACTTTGATTCTTTCAATAATGG
130 -GGATTAGCATGAGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGG
* *
2083509 TGGAAAGAAAAGAGC-TTT-TTCCGACACTGAAGCATCAA-GTCATGTATCCTGATGAAGGGAAT
194 TGGAAAG-AAA-AGCTTTTCTTGCGACACCGAAGCATCAATGTCATGTATCCT-ATGAAGGGAAT
* * * * * * * * * *
2083571 GTGTTTTGACTTCCCAATGTT--TAAGAATGGAGACTGTTACGAGAATCGATGCATGGCTCATTT
256 GTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGCG-AGCAATGCTTGTCTTATTT
** * * **
2083634 TGGGGATGAACTTTGATTTTAAGGAAAATA-TGCAAAGAAAGGATTTTAATGCAAAAGAAAATCA
320 AAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAA-AAAAGATTTCCATGCAAAAGAAAATCA
* * *
2083698 TCAATATCATTTTTCCTAATGAGGAGAATGTGTTTATAGTTCCTAATCACAAAATGAATGAAGAT
384 TCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAAAT
* *
2083763 CACTACTAGAATCAATGTTTGT-T
449 CATTACTAGAATCCATGTTTGTCT
* ** * * * *
2083786 GCATTT-ATGGCATGAACTTAGACTTTACAAAAATTT--ACGGATAGAAATCCTTTTTTGCAAAA
1 -CATTTGA-GGCACGAACTTAGACTTTAC-AAAATTTGGTGGGA-AAAAAGCCTTTCTTGCGAAA
*** * * *
2083848 CCAAAGCATCAATGCCATGTATCCTAATAAGAAGACTATATTTATGGTGCCTAATCCTAAAAATA
62 CCAAAGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTTAAAAGA
* * * * * * * *
2083913 TTGGGGAATA-TATGACTATTTATGTTTGTCTTATTTAAGAGAGAAATTTTGATTCTATCAAAAA
127 AT-GGGATTAGCATGAGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAA
* * *
2083977 CGGTGGAAAGAAAGGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAGGGGAA
191 CGGTGGAAAGAAAAGCTTTTCTTGCGACACCGAAGCATCAATGTCATGTATCCT-ATGAAGGGAA
* * * * * *
2084042 TGTGTTTTGGCTTCCTAATCTTGAAAAGAAGGGAGACT-AT-TGCGAGAATTGATGCATGTCGTA
255 TGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGCGAGCA---ATGCTTGTCTTA
* ***
2084105 TTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTTGTG-AGAAA-AAA
317 TTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAA-AAAAGATTTCCATGCA-AAAGAAA
* *
2084168 ATCATCAATATCATTTATCCTAACGAGCAGAATTGTGTTTATAGTGCCTAATCACAAAATGAAT-
380 ATCATCAATATCATTTATCCTAATGAGGAGAA-TGTGTTTATAGTGCCTAATCACAAAATGAATG
* **
2084232 AAAGATCATTACTATAATCCATGTTCATCT
444 AAA-ATCATTACTAGAATCCATGTTTGTCT
* * * * * *
2084262 CTTTTGAGACACAAACTTAGACTTTACAAAAATTCGTGGGAAAAAAACCCTTT-TTGGCGAAACC
1 CATTTGAGGCACGAACTTAGACTTTACAAAATTTGGTGGG-AAAAAAGCCTTTCTT-GCGAAACC
* * *
2084326 AAAGCACCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTTCCTAAT-CTTAAAAAGAA
64 AAAGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTT-AAAAGAA
* * * * *
2084390 CGGGGATTAGCAAGAGTATTCAGGTTTGTCGAATTT-AGCTAG-CAAACCTTGATTCTATCAAAA
128 -TGGGATTAGCATGAGTATTCATGTTTGTCGTATTTAAG--AGACAAACTTTGATTCTATCAAAA
* * * *
2084453 ATGGTGGAAAGAAAAGATTTTCTTACGACACTGAAGCATCAATGTCATGTATCCTGATGAAGGGA
190 ACGGTGGAAAGAAAAGCTTTTCTTGCGACACCGAAGCATCAATGTCATGTATCCT-ATGAAGGGA
* *** * * * ** *
2084518 ATGTGTTTTGGCTTCTCAATCCAAAAAAGAATAGAGACTGTTACGAGAAAAAATGTTTGTCTTAT
254 ATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGCG-AGCAATGCTTGTCTTAT
* *
2084583 TTAAGGGATGACCTTTGATTTTCAA-GAAAATAGGGC-AAAGAAGATTTCCATGCAAAAGAAAAT
318 TTAAGGGATGAACTTTGATTTT-AAGGAAAATAGGGCAAAAAAAGATTTCCATGCAAAAGAAAAT
* *
2084646 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAATGCCTAATCACAAAATAAAT-AAA
382 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAA
* *
2084710 AACTATTACTAAAATCCATGTTTGTCT
447 ATC-ATTACTAGAATCCATGTTTGTCT
* * * *
2084737 CATTAGAGGCACGAACTTAGACTATACAAAAATTT-GTGGGAAAAAAACCTTTATTGCGAAACCA
1 CATTTGAGGCACGAACTTAGACTTTAC-AAAATTTGGTGGGAAAAAAGCCTTTCTTGCGAAACCA
* * *
2084801 AAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAACG
65 AAGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTTAAAAGAATG
* * * * * *
2084866 TTGTTTAGCAT-AGTATTCATGTTTGTCGAATTTAGGAGACAAACTTTGATTCTATGAAAAACGA
130 -GGATTAGCATGAGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGG
* * * * *
2084930 TGGAAAGAAAAGTTTTTCTTGCGGCACCGAAGCTTCAATGTCATGGATCCCGATGAAGGGAATGT
194 TGGAAAGAAAAGCTTTTCTTGCGACACCGAAGCATCAATGTCATGTAT-CCTATGAAGGGAATGT
* *** * * * * *
2084995 GTTTTGGCTTCCTAATCCAAAAAAGAATGGAAACTATTA--CGAGAATTGATGCATGTCATATTT
258 GTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGCGAGCA---ATGCTTGTCTTATTT
** * * * *
2085058 ATTGGATGAACTTTGATTTTAAGGGAAACAGGGCAAAGAAATGATTTTCATGACAAAAGAAAATC
320 AAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAA-AAAAGATTTCCATG-CAAAAGAAAATC
* * * * *
2085123 ATCAATAGCATTTATCCTAATGAGGAGAATGTGTTTATAGTTCCTAATAACAAAATGGATGAAGA
383 ATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAAA
* *
2085188 TAATTACTAGAATCCATGTTCGTCT
448 TCATTACTAGAATCCATGTTTGTCT
* ** * * *
2085213 CATTT-AAG-AC--ACCAAGACTTCACAAAATTTGGTGGGAAAAAAGCCTTTCTTGAGACACCAA
1 CATTTGAGGCACGAACTTAGACTTTACAAAATTTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAA
* * * * *
2085274 AGCATCAATATGATGCACCCTAATAAGAAGACTATGTTTAAGGTGTCTAACCCTTAAAAGAATGG
66 AGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTTAAAAGAATGG
* * * * * * *
2085339 GATTAGTATAAGTACTT-ATTTTTGTCCTATTTAAGAGACAAAATTTGATTTTATCAAAAATGGT
131 GATTAGCATGAGTA-TTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGT
* * * *
2085403 GGAAAAAAAAGCTTTTCTTGTGACATCGAAGCATCAATGTCATGTATCCTATTAAGGGGAATGTG
195 GGAAAGAAAAGCTTTTCTTGCGACACCGAAGCATCAATGTCATGTATCCTATGAA-GGGAATGTG
** * * * *
2085468 TTTTGAATACCCAATCTTGAAAAGAATGGAGACCGTTATGTGAGCAATGCTTGCCTTATTTAAGG
259 TTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGCGAGCAATGCTTGTCTTATTTAAGG
* * * *
2085533 GGTGGACTTTGATTTTCAGGAAAATAGGAC-AAAAAAGATTTCCATGCAAAAGAAAATCATCAAT
324 GATGAACTTTGATTTTAAGGAAAATAGGGCAAAAAAAGATTTCCATGCAAAAGAAAATCATCAAT
* *
2085597 ATCATTTATCCTAATAAGGAGATTGTGTTTATAGTGCCTAATCACAAAATGAATGAAAATCATTA
389 ATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAAATCATTA
*
2085662 CTAGAATCCATATTTGTCT
454 CTAGAATCCATGTTTGTCT
* * * *
2085681 CATTAGAGGTATGAACTTAGACTGTACAAAAATTT-GTGGGAAAAAAGCCTTTAC-TGCGAAACC
1 CATTTGAGGCACGAACTTAGACTTTAC-AAAATTTGGTGGGAAAAAAGCCTTT-CTTGCGAAACC
* * *
2085744 ACAGCATCAATATGATGTATCCTAACAAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAG-AT
64 AAAGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTTAAAAGAAT
** * * * *
2085808 CGTTCAATAGCATGAGTATTCATGTTTGTTG-AATTAGGAGACAAACTTTGATTCTATCAAAAAC
129 -G-GGATTAGCATGAGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAAC
* * * *
2085872 GGTGGAAAGAAAAGATTTTCTTGCGACACTGAAGCTTCAATGTCATGGATCCTGATGAAGGGAAT
192 GGTGGAAAGAAAAGCTTTTCTTGCGACACCGAAGCATCAATGTCATGTATCCT-ATGAAGGGAAT
* * * * * * * *
2085937 GTGTTTTGGCTTCCCAATCTAGAAAATAATGGAGACTGTTGTGGGAATCGATGCATGTCGTATTT
256 GTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGCG-AGCAATGCTTGTCTTATTT
* * * *
2086002 AAGGGATGAACTTTGATTTTGAGGGAAACAGGGCAAAGAAATGATTTCCATGACAAAAGAAAATC
320 AAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAA-AAAAGATTTCCATG-CAAAAGAAAATC
* * *
2086067 ATCAATATCATTTATCCTATTGAAGAGAATGTGTTTATAATGCCTAATCACAAAATGAATGAAAA
383 ATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAAA
* *
2086132 TAATTACTAGAATCCATGTTCGTCT
448 TCATTACTAGAATCCATGTTTGTCT
* * * * * *
2086157 CATTTGAGACACCAACTTAGACTTTACAAAATTTGGTGGGAAAAAAGCCTTTGTTGTGACACTAA
1 CATTTGAGGCACGAACTTAGACTTTACAAAATTTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAA
* * *
2086222 AGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTAAGGTGTCTAACCCTTAAAAGAATGG
66 AGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTTAAAAGAATGG
* * * * * *
2086287 GATTAGTATGAGTACTCATTTTTGTCCTATTTAAGAGACAAACTTTGATTCTATCGAAAATGGTG
131 GATTAGCATGAGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTG
* * * *
2086352 GAAAAAAAAGCTTTTCTTGTGACATCGAAGCATCAATGTCATGTATCCTATTAAGGGGAATGTGT
196 GAAAGAAAAGCTTTTCTTGCGACACCGAAGCATCAATGTCATGTATCCTATGAA-GGGAATGTGT
** * * * *
2086417 TTTGAATACCCAATCTTGAAAAGAATGGAGACCGTTATGTGAGCAATGCTTGCCTTATTTAAGGG
260 TTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGCGAGCAATGCTTGTCTTATTTAAGGG
* * * * *
2086482 GTGGACTTTGATTTTCAGGAAAATAGGAC-AAAAAAGATTTCCATGCAAAAGAAAATCATTAATA
325 ATGAACTTTGATTTTAAGGAAAATAGGGCAAAAAAAGATTTCCATGCAAAAGAAAATCATCAATA
* *
2086546 TCATTTATCCCAATGAGGAGATTGTGTTTATAGTGCCTAATCACAAAATGAATGAAAATCATTAC
390 TCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAAATCATTAC
*
2086611 TAGAATCCATATTTGTCT
455 TAGAATCCATGTTTGTCT
* * * *
2086629 CATTAGAGGTATGAACTTAGACTGTACAAAAATTT-GTGGGAAAAAAGCCTTTAC-TGCGAAACC
1 CATTTGAGGCACGAACTTAGACTTTAC-AAAATTTGGTGGGAAAAAAGCCTTT-CTTGCGAAACC
* * * **
2086692 ACAGCATCAATATGATGTATCCTAACAAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGACC
64 AAAGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTTAAAAGAAT
** * * * *
2086757 GTTCAATAGCATGAGTATTCATGTTTGTTG-AATTAGGAGACAAACTTTGATTCTATCAAAAACG
129 G-GGATTAGCATGAGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACG
* * * *
2086821 GTGGAAAGAAAAGATTTTCTTGCGACACTGAAGCTTCAATGTCATGGATCCTGATGAAGGGAATG
193 GTGGAAAGAAAAGCTTTTCTTGCGACACCGAAGCATCAATGTCATGTATCCT-ATGAAGGGAATG
* * * * * * * *
2086886 TGTTTTGGCTTCCCAATCTAGAAAATAATGGAGACTGTTGTGGGAATCGATGCATGTCGTATTTA
257 TGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGCG-AGCAATGCTTGTCTTATTTA
* * * *
2086951 AGGGATGAACTTTGATTTTGAGGGAAACAGGGCAAAGAAATGATTTCCATGACAAAAGAAAATCA
321 AGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAA-AAAAGATTTCCATG-CAAAAGAAAATCA
* * *
2087016 TCAATATCATTTATCCTATTGAAGAGAATGTGTTTATAATGCCTAATCACAAAATGAATGAAAAT
384 TCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAAAT
* *
2087081 AATTACTAGAATCCATGTTCGTCT
449 CATTACTAGAATCCATGTTTGTCT
* * * * * *
2087105 CATTTGAGACACCAACTTAGACTTTACAAAATTTGGTGGGAAAAAAGCCTTTGTTGTGACACTAA
1 CATTTGAGGCACGAACTTAGACTTTACAAAATTTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAA
* * *
2087170 AGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTAAGGTGTCTAACCCTTAAAAGAATGG
66 AGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTTAAAAGAATGG
* * * * * * *
2087235 GATTAGTATGAGTACTCATTTTTCTCCTATTTAAGAGACAAACTTTGATTCTATCGAAAATGGTG
131 GATTAGCATGAGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTG
* * * *
2087300 GAAAAAAAAGCTTTTCTTGTGACATCGAAGCATCAATGTCATGTATCCTATTAAGGGGAATGTGT
196 GAAAGAAAAGCTTTTCTTGCGACACCGAAGCATCAATGTCATGTATCCTATGAA-GGGAATGTGT
** * * * *
2087365 TTTGAATACCCAATCTTGAAAAGAATGGAGACCGTTATGTGAGCAATGCTTGCCTTATTTAAGGG
260 TTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGCGAGCAATGCTTGTCTTATTTAAGGG
* * * * *
2087430 GTGGACTTTGATTTTCAGGAAAATAGGAC-AAAAAAGATTTCCATGCAAAAGAAAATCATTAATA
325 ATGAACTTTGATTTTAAGGAAAATAGGGCAAAAAAAGATTTCCATGCAAAAGAAAATCATCAATA
* *
2087494 TCATTTATCCCAATGAGGAGATTGTGTTTATAGTGCCTAATCACAAAATGAATGAAAATCATTAC
390 TCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAAATCATTAC
*
2087559 TAGAATCCATATTTGTCT
455 TAGAATCCATGTTTGTCT
* * * *
2087577 CATTAGAGGTATGAACTTAGACTGTACAAAAATTT-GTGGGAAAAAAGCCTTTAC-TGCGAAACC
1 CATTTGAGGCACGAACTTAGACTTTAC-AAAATTTGGTGGGAAAAAAGCCTTT-CTTGCGAAACC
* * * **
2087640 ACAGCATCAATATGATGTATCCTAACAAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGACC
64 AAAGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTTAAAAGAAT
** * * * *
2087705 GTTCAATAGCATGAGTATTCATGTTTGTTG-AATTAGGAGACAAACTTTGATTCTATCAAAAACG
129 G-GGATTAGCATGAGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACG
* * * *
2087769 GTGGAAAGAAAAGATTTTCTTGCGACACTGAAGCTTCAATGTCATGGATCCTGATGAAGGGAATG
193 GTGGAAAGAAAAGCTTTTCTTGCGACACCGAAGCATCAATGTCATGTATCCT-ATGAAGGGAATG
* * * * * * * *
2087834 TGTTTTGGCTTCCCAATCTAGAAAATAATGGAGACTGTTGTGGGAATCGATGCATGTCGTATTTA
257 TGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGCG-AGCAATGCTTGTCTTATTTA
* * * *
2087899 AGGGATGAACTTTGATTTTGAGGGAAACAGGGCAAAGAAATGATTTCCATGACAAAAGAAAATCA
321 AGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAA-AAAAGATTTCCATG-CAAAAGAAAATCA
* * *
2087964 TCAATATCATTTATCCTATTGAAGAGAATGTGTTTATAATGCCTAATCACAAAATGAATGAAAAT
384 TCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAAAT
* *
2088029 AATTACTAGAATCCATGTTCGTCT
449 CATTACTAGAATCCATGTTTGTCT
* * * * * *
2088053 CATTTGAGACACCAACTTAGACTTTACAAAATTTGGTGGGAAAAAAGCCTTTGTTGTGACACTAA
1 CATTTGAGGCACGAACTTAGACTTTACAAAATTTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAA
* * *
2088118 AGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTAAGGTGTCTAACCCTTAAAAGAATGG
66 AGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTTAAAAGAATGG
* * * * * *
2088183 GATTAGTATGAGTACTCATTTTTGTCCTATTTAAGAGACAAACTTTGATTCTATCGAAAATGGTG
131 GATTAGCATGAGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTG
* * * *
2088248 GAAAAAAAAGCTTTTCTTGTGACATCGAAGCATCAATGTCATGTATCCTATTAAGGGGAATGTGT
196 GAAAGAAAAGCTTTTCTTGCGACACCGAAGCATCAATGTCATGTATCCTATGAA-GGGAATGTGT
** * * * *
2088313 TTTGAATACCCAATCTTGAAAAGAATGGAGACCGTTATGTGAGCAATGCTTGCCTTATTTAAGGG
260 TTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGCGAGCAATGCTTGTCTTATTTAAGGG
* * * *
2088378 GTGGACTTTGATTTTCAGGAAAATAGGAC-AAAAAAGATTTCCATGCAAAAGAAAATCATCAATA
325 ATGAACTTTGATTTTAAGGAAAATAGGGCAAAAAAAGATTTCCATGCAAAAGAAAATCATCAATA
* *
2088442 TCATTTATCCCAATGAGGAGATTGTGTTTATAGTGCCTAATCACAAAATGAATGAAAATCATTAC
390 TCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAAATCATTAC
*
2088507 TAGAATCCATATTTGTCT
455 TAGAATCCATGTTTGTCT
* * * *
2088525 CATTAGAGGTATGAACTTAGACTGTACAAAAATTT-GTGGGAAAAAAGCCTTTAC-TGCGAAACC
1 CATTTGAGGCACGAACTTAGACTTTAC-AAAATTTGGTGGGAAAAAAGCCTTT-CTTGCGAAACC
* ** * **
2088588 AAAGCATCAAGATGATGTATCCTAACGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGACC
64 AAAGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTTAAAAGAAT
** * * * *
2088653 GTTCAATAGCATGAGTATTCATGTTTGTTG-AATTAGGAGACAAACTTTGATTCTATCAAAAACG
129 G-GGATTAGCATGAGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACG
* * * *
2088717 GTGGAAAGAAAAGATTTTCTTGCGACACTGAAGCTTCAATGTCATGGATCCTGATGAAGGGAATG
193 GTGGAAAGAAAAGCTTTTCTTGCGACACCGAAGCATCAATGTCATGTATCCT-ATGAAGGGAATG
* * * * * * * *
2088782 TGTTTTGGCTTCCCAATCTAGAAAATAATGGAGACTGTTGTGGGAATCGATGCATGTCGTATTTA
257 TGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGCG-AGCAATGCTTGTCTTATTTA
* * * *
2088847 AGGGATGAACTTTGATTTTGAGGGAAACAGGGCAAAGAAATGATTTCCATGACAAAAGAAAATCA
321 AGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAA-AAAAGATTTCCATG-CAAAAGAAAATCA
* *
2088912 TCAATATCATTTATCCTAATGAAGAGAATGTGTTTATAATGCCTAATCACAAAATGAATGAAAAT
384 TCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAAAT
* *
2088977 AATTACTAGAATCCATGTTCGTCT
449 CATTACTAGAATCCATGTTTGTCT
* * * * * *
2089001 CATTTGAGACACCAACTTAGACTTTACAAAATTTGGTGGGAAAAAAGCCTTTGTTGTGACACTAA
1 CATTTGAGGCACGAACTTAGACTTTACAAAATTTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAA
* * *
2089066 AGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTAAGGTGTCTAACCCTTAAAAGAATGG
66 AGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTTAAAAGAATGG
* * * * * *
2089131 GATTAGTATGAGTACTCATTTTTGTCCTATTTAAGAGACAAACTTTGATTCTATCGAAAATGGTG
131 GATTAGCATGAGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTG
* *
2089196 GAAAGAAAAGCTTTTCTTGTGACACCGAAGCATCAATGTCATGTATCCTATTAAGGGGAATGTGT
196 GAAAGAAAAGCTTTTCTTGCGACACCGAAGCATCAATGTCATGTATCCTATGAA-GGGAATGTGT
* * * * * *
2089261 TTTTGATACCTAATCTTGAAAAGAATGGAGACAGTTATGCGAGCAATGCTTGCCTTATTTAAGGG
260 TTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGCGAGCAATGCTTGTCTTATTTAAGGG
* ** *
2089326 AT-AGACTTTGATTTTTTAAGGAAAGTAGGGCGAAGGAAAGATTTCCATGCAAAAGAAAATAATC
325 ATGA-ACTTTGA--TTTTAAGGAAAATAGGGC-AAAAAAAGATTTCCATGCAAAAGAAAATCATC
* * * * *
2089390 AATATCTTTTATCCTAATGAGGAGAATGTGTTTAGAGTGCGTAATCACAAAAAGGATGAAGAA-C
386 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAA-AATC
*
2089454 ATTACTAGAATCAATGTTTGTCT
450 ATTACTAGAATCCATGTTTGTCT
* * * *
2089477 CATTTGAGGCACGAACATAGATTTTAC--CA-TTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAA
1 CATTTGAGGCACGAACTTAGACTTTACAAAATTTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAA
* * * * * *
2089539 AGCATCGATATCG-TGTATCCTAATGAGAAGACTATGCTTATGGTACCAAATACTTAAAAGAATG
66 AGCATCAATAT-GATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTTAAAAGAATG
* * * * *
2089603 GGAATTAGCAAGAGTATTCATGTTTGTCGAATTTAAGTGACAAACCTTGATTCTATTAAAAACGG
130 GG-ATTAGCATGAGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGG
* ** * * *
2089668 TGGAAAGAAAAGATTTTCTTATGACATCGAAGCATCAATGTCATGCATCATGATGAAGGGAATGT
194 TGGAAAGAAAAGCTTTTCTTGCGACACCGAAGCATCAATGTCATGTATCCT-ATGAAGGGAATGT
** * ** ** * *
2089733 GTTTTGGCTTCCCAATCCAGAAAAGAGTAAAGACTGTTATAAGA-AATGATGTTTGTCTTATTTA
258 GTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGCGAGCA--ATGCTTGTCTTATTTA
*
2089797 AGGGATGAACTTTGATTTTCAA-GAAAATAGGGC-AAAAAAGATTTCCATGCAAAAGAAAATCGT
321 AGGGATGAACTTTGATTTT-AAGGAAAATAGGGCAAAAAAAGATTTCCATGCAAAAGAAAATCAT
* * * * * *
2089860 CGATGTCATTTATCCTAATTAGGAGAATGTGTTTATAGTGCCTAATCATAAAATAAATTAAAATC
385 CAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAAATC
*
2089925 ATTAATAGAATCCATGTTTGTCT
450 ATTACTAGAATCCATGTTTGTCT
* ** * * * * *
2089948 CATTAGAGGCACGAACTTAGACTACACAAAAATTAGTGGGAAAAAAG-CGTTCCTGTGAAACCAA
1 CATTTGAGGCACGAACTTAGACTTTACAAAATTTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAA
* * * * * * *
2090012 AGCGTCAATATGATGGATCCTAATGAGAAGAATATGTTCATGGTGCCTAATCCTGAAAAGAACGT
66 AGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTTAAAAGAATG-
** * * ** *
2090077 TAATTAGCATGAGTATCCATGTTTGTCGAATTTGGGAGACAAACTTTGATTCTATCAAAAACAGT
130 GGATTAGCATGAGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGT
* **
2090142 AGAAAGAAAATATTTTCTTGCGACACC
195 GGAAAGAAAAGCTTTTCTTGCGACACC
2090169 AAAGTTTAGT
Statistics
Matches: 7369, Mismatches: 1189, Indels: 446
0.82 0.13 0.05
Matches are distributed among these distances:
464 4 0.00
465 2 0.00
466 1 0.00
467 163 0.02
468 273 0.04
469 41 0.01
470 14 0.00
471 260 0.04
472 1613 0.22
473 806 0.11
474 546 0.07
475 1059 0.14
476 1752 0.24
477 387 0.05
478 16 0.00
479 5 0.00
480 6 0.00
484 2 0.00
485 5 0.00
486 1 0.00
487 1 0.00
488 3 0.00
489 1 0.00
491 1 0.00
492 3 0.00
493 1 0.00
494 1 0.00
495 5 0.00
496 3 0.00
497 1 0.00
498 3 0.00
500 1 0.00
501 2 0.00
502 2 0.00
503 137 0.02
504 27 0.00
505 217 0.03
506 4 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.30
Consensus pattern (472 bp):
CATTTGAGGCACGAACTTAGACTTTACAAAATTTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAA
AGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTTAAAAGAATGG
GATTAGCATGAGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTG
GAAAGAAAAGCTTTTCTTGCGACACCGAAGCATCAATGTCATGTATCCTATGAAGGGAATGTGTT
TTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGCGAGCAATGCTTGTCTTATTTAAGGGA
TGAACTTTGATTTTAAGGAAAATAGGGCAAAAAAAGATTTCCATGCAAAAGAAAATCATCAATAT
CATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAAATCATTACT
AGAATCCATGTTTGTCT
Found at i:2090366 original size:194 final size:193
Alignment explanation
Indices: 2089980--2090354 Score: 436
Period size: 194 Copynumber: 1.9 Consensus size: 193
2089970 TACACAAAAA
* * * *
2089980 TTAGTGGGAAAAAAGCGTTCCTGTGAAACCAAAGCGTCAATATGATGGATCCTAATGAGAAGAAT
1 TTAGTGGGAAAAAAGCGTTCCTGCGAAACCAAAGCATCAATATGATGGACCCTAATAAGAAGAAT
* * *
2090045 ATGTTCATGGTGCCTAATCCTGAAAAGAACGTTAATTAGCATGAGTATCCATGTTTGTCGAATTT
66 ATGTTCAAGGTGCCTAATCCTGAAAAGAAC-TGAATTAGCATGAGCATCCATGTTTGTCGAATTT
** * *
2090110 GGGAGACAAACTTTGATTCTATCAAAAACAGTAGAAAGAAAATATTTTCTTGCGACACCAAAGT
130 AAGAAACAAACTTTGATTCTATCAAAAACAGTAGAAAGAAAAGATTTTCTTGCGACACCAAAGT
* * * * * *
2090174 TTAGTGGGAGAAAAGCCTTTCTTGCGACACCAAAGCATCAATATGATGTACCCTAATAAGAAGAC
1 TTAGTGGGAAAAAAG-CGTTCCTGCGAAACCAAAGCATCAATATGATGGACCCTAATAAGAAGAA
* * * *
2090239 TATGTTTAAGGTGCCTAA-CCTTTAAAAGAA-TGAGATTAGTATGAGCA-CTCATTTTTGTC-AT
65 TATGTTCAAGGTGCCTAATCC-TGAAAAGAACTGA-ATTAGCATGAGCATC-CATGTTTGTCGA-
* * *
2090300 ATTTAATAAACAAACTTTGATTCTATCAAAAATAGT-GAAAAGAAAAGCTTTTCTT
126 ATTTAAGAAACAAACTTTGATTCTATCAAAAACAGTAG-AAAGAAAAGATTTTCTT
2090355 TTCCCACCAA
Statistics
Matches: 151, Mismatches: 24, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
193 5 0.03
194 82 0.54
195 64 0.42
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (193 bp):
TTAGTGGGAAAAAAGCGTTCCTGCGAAACCAAAGCATCAATATGATGGACCCTAATAAGAAGAAT
ATGTTCAAGGTGCCTAATCCTGAAAAGAACTGAATTAGCATGAGCATCCATGTTTGTCGAATTTA
AGAAACAAACTTTGATTCTATCAAAAACAGTAGAAAGAAAAGATTTTCTTGCGACACCAAAGT
Found at i:2090500 original size:36 final size:36
Alignment explanation
Indices: 2090448--2090520 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
2090438 ATTTGAAAAT
*
2090448 ACCAAAAATGTGTTTTATTCATTTAAGTACTTTATA
1 ACCAAAAATGTATTTTATTCATTTAAGTACTTTATA
2090484 ACCAAAAATGTATTTTATTCATTTAAGTACTTTATA
1 ACCAAAAATGTATTTTATTCATTTAAGTACTTTATA
2090520 A
1 A
2090521 ATTTTGTGCT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.38, C:0.11, G:0.07, T:0.44
Consensus pattern (36 bp):
ACCAAAAATGTATTTTATTCATTTAAGTACTTTATA
Found at i:2090694 original size:20 final size:19
Alignment explanation
Indices: 2090665--2090703 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
2090655 AGGTCAAAAC
2090665 CCTTAAATGTATCAATACA
1 CCTTAAATGTATCAATACA
*
2090684 CCTTCAAATGTATCGATACA
1 CCTT-AAATGTATCAATACA
2090704 TTATATCGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.31
Consensus pattern (19 bp):
CCTTAAATGTATCAATACA
Found at i:2096817 original size:8 final size:8
Alignment explanation
Indices: 2096804--2096834 Score: 53
Period size: 8 Copynumber: 3.8 Consensus size: 8
2096794 ATTTGATTAA
2096804 ATTTTGTG
1 ATTTTGTG
2096812 ATTTTGTG
1 ATTTTGTG
2096820 ATTTTGTG
1 ATTTTGTG
2096828 ATGTTTG
1 AT-TTTG
2096835 ATGTTGAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 18 0.82
9 4 0.18
ACGTcount: A:0.13, C:0.00, G:0.26, T:0.61
Consensus pattern (8 bp):
ATTTTGTG
Found at i:2097504 original size:21 final size:21
Alignment explanation
Indices: 2097480--2097523 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
2097470 CTCTAGGCAA
*
2097480 CACTCACCAGGTCGCGACC-GG
1 CACTC-CCAGGTCGCAACCAGG
2097501 CACTCCCAGGTCGCAACCAGG
1 CACTCCCAGGTCGCAACCAGG
2097522 CA
1 CA
2097524 GCCCCCACAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 12 0.57
21 9 0.43
ACGTcount: A:0.23, C:0.43, G:0.25, T:0.09
Consensus pattern (21 bp):
CACTCCCAGGTCGCAACCAGG
Found at i:2099281 original size:36 final size:36
Alignment explanation
Indices: 2099234--2099306 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
2099224 ATTTGAAAAT
2099234 ACCAAAAATGTGTTTTATTCATTTAAGTACTTTATA
1 ACCAAAAATGTGTTTTATTCATTTAAGTACTTTATA
2099270 ACCAAAAATGTGTTTTATTCATTTAAGTACTTTATA
1 ACCAAAAATGTGTTTTATTCATTTAAGTACTTTATA
2099306 A
1 A
2099307 ATTTTGTGCT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.37, C:0.11, G:0.08, T:0.44
Consensus pattern (36 bp):
ACCAAAAATGTGTTTTATTCATTTAAGTACTTTATA
Found at i:2101430 original size:472 final size:474
Alignment explanation
Indices: 2100404--2101506 Score: 1297
Period size: 472 Copynumber: 2.3 Consensus size: 474
2100394 TGAGCTTTCA
* * * * * * ** * * *
2100404 ATCCTATTAAGGCGAATGTGTTTTGGATACCCAATCTTGTAAAGAATAGAGACTGTTACGCG-AG
1 ATCCTAATAAGGGGAAAGTGTTTTGGCTTCCTAATCTTAAAAAGAATAGAGACTGTTATGAGAAT
* * * * * *
2100468 CAATGCTTGCCTTATTTAAGGGAT-AGACTTTGATTTTCAGGAAAATAGGGCGAAGGAAAGATTT
66 CGATGCTTGTCTTATTTAACGGATGA-ACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGA-TT
* * * *
2100532 TCTTGCAAAAGAAAATCATAAATATCAATTTTCCTAATGAGGAAAATGTGTTTAGAGTGCGTAAT
129 TCATGCAAAAGAAAATCATCAATATC-ATTTTCCTAATGAGGAAAATATGTTTAGAGTGCCTAAT
* *
2100597 CACAAAATGAACAAAGATCATTACTAGAATCAATGTTTGTCGCATTTGAGGCAGGAACTTAGACT
193 CACAAAATGAACAAAGATCATTACTACAATCAATGTTTGTCGCACTTGAGGCAGGAACTTAGACT
* * *
2100662 TTACCAAAATTTATGGAAAGAAAGCATTCCTTGTGAAACTAAAGCATCGATATCGTGTATCTTAA
258 TTACCAAAATTTATGGAAAGAAAGCATTCCTTGCGAAACCAAAGCATCGATATCGTGTATCCTAA
*
2100727 TGAGAAGACTATGTTTATGGTGCCAAATACTTAAAAAAATAGGGATTAGCAAGAGTATTCATGTT
323 TGAGAAGACTATGTTTATGGTGCCAAATACTGAAAAAAATAGGGATTAGCAAGAGTATTCATGTT
* * **
2100792 TGTCGAATTTAAGTGACAAACTTGGATTCTATAAAAAACGGTGGAAATAAAAGATTTTCTTTTGA
388 TGTCGAATTTAAGAGACAAACTTGGATTCTATAAAAAACGGTGGAAAGAAAAGATTTTCTTGCGA
**
2100857 CAATGAAGCATTAATGTCATGT
453 CAACAAAGCATTAATGTCATGT
* * * * *
2100879 ATCCTGATGAA-GGGAACGTGTTTCGGCTT-CTCAATC-CAGAAAAGAATGGAGACTGTTACATG
1 ATCCTAAT-AAGGGGAAAGTGTTTTGGCTTCCT-AATCTTA-AAAAGAATAGAGACTGTT--ATG
* * *
2100941 A-AAT-GATGTTTGTCTTATTTAA-GGATGAACTTTGATTTTTAGAAAAATAGGGC-AA-AAAAG
61 AGAATCGATGCTTGTCTTATTTAACGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAG
* * * *
2101001 ATTTCGATGCAAAA-AAAATCATCGATATCATTTATCTTAATGAGGAGAATATGTTTATAGTGCC
126 ATTTC-ATGCAAAAGAAAATCATCAATATCATTT-TCCTAATGAGGAAAATATGTTTAGAGTGCC
* ** * * *
2101065 TAATCATAAAATGAATGAAGATCATTACTACAATCAATGTTTGTCTCACTTGTGGCATGAACTTA
189 TAATCACAAAATGAACAAAGATCATTACTACAATCAATGTTTGTCGCACTTGAGGCAGGAACTTA
* * * * *
2101130 GACTTTTCCAAAA-TTAGTAGG-AAGAAAGCCTTTCTTGCGAAACCGAAGCATCGATATCTTGTA
254 GACTTTACCAAAATTTA-T-GGAAAGAAAGCATTCCTTGCGAAACCAAAGCATCGATATCGTGTA
* * * *
2101193 TCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAT-GGGAATTA-CTATGACG-
317 TCCTAATGAGAAGACTATGTTTATGGTGCCAAATACTGAAAAAAATAGGG-ATTAGC-AAGA-GT
* * * *
2101255 ATTCATGTTTGTC-ATATTTAAGAGACAAACTTTGATTCTATAAAAAATGGTGGAAAGAAATGCT
379 ATTCATGTTTGTCGA-ATTTAAGAGACAAACTTGGATTCTATAAAAAACGGTGGAAAGAAAAGAT
* *
2101319 TTTCTTGCGATACCAAAGCATTAATGTCATGT
443 TTTCTTGCGACAACAAAGCATTAATGTCATGT
*
2101351 ATCCTAATAAGGGGAAAGTGTTTTGGCTTCCTAATCTTAAAAAGAATAGAGACTGTTGTGAGAAT
1 ATCCTAATAAGGGGAAAGTGTTTTGGCTTCCTAATCTTAAAAAGAATAGAGACTGTTATGAGAAT
* * *
2101416 CGATGCTCGTCTTA-TTAACTGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTC
66 CGATGCTTGTCTTATTTAACGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTT-
2101480 CATGCAAAAGAAAATCATCAATATCAT
130 CATGCAAAAGAAAATCATCAATATCAT
2101507 GTGAAACTAA
Statistics
Matches: 528, Mismatches: 75, Indels: 50
0.81 0.11 0.08
Matches are distributed among these distances:
470 3 0.01
471 21 0.04
472 360 0.68
473 20 0.04
474 20 0.04
475 83 0.16
476 18 0.03
477 3 0.01
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (474 bp):
ATCCTAATAAGGGGAAAGTGTTTTGGCTTCCTAATCTTAAAAAGAATAGAGACTGTTATGAGAAT
CGATGCTTGTCTTATTTAACGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTC
ATGCAAAAGAAAATCATCAATATCATTTTCCTAATGAGGAAAATATGTTTAGAGTGCCTAATCAC
AAAATGAACAAAGATCATTACTACAATCAATGTTTGTCGCACTTGAGGCAGGAACTTAGACTTTA
CCAAAATTTATGGAAAGAAAGCATTCCTTGCGAAACCAAAGCATCGATATCGTGTATCCTAATGA
GAAGACTATGTTTATGGTGCCAAATACTGAAAAAAATAGGGATTAGCAAGAGTATTCATGTTTGT
CGAATTTAAGAGACAAACTTGGATTCTATAAAAAACGGTGGAAAGAAAAGATTTTCTTGCGACAA
CAAAGCATTAATGTCATGT
Found at i:2102574 original size:474 final size:475
Alignment explanation
Indices: 2101530--2104145 Score: 2833
Period size: 474 Copynumber: 5.5 Consensus size: 475
2101520 ATCGATAACG
* * * * * *
2101530 TGTATTCTAAAGAGAAGACTATGTTTATGGTGCCTAATCCTAAAGAGAGTAGGGATTAGTATCAC
1 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTAT-AA
* * *
2101595 TATTCATGTTTGTCGTATTTAAGT-AGCAAACTTTGATTCTATCAAAAACGATAGAAAGAAAAGC
65 TATTCATGTTTGTCGTATTTAAGTGA-CAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGA
* * * * *
2101659 TTTTCTTTCGACAACAAAGCATCAATTTCAAGTATCTTAAT-AAGGGGAATGT-GTTTTGGCTTC
129 TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAA-GGGAATGTGGTTTT-GCTTC
* * * * * *
2101722 CCAATCTTGAAAACAATGGAGATTGTTACGAGCATCGATGCTTGTCTTATTTAAGGGATGAACTT
192 CCAACCATGAAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTT
* * * * * *
2101787 TGATTTTAAGGAAATTAGGG-TAA-ATAAGATTTCCATGCAAAAGAAAATAATTAATATCATTTA
257 TGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTA
* * * * ** * *
2101850 ACCTAATGAGGAGAATTTTTTTATAGTGCCAAATCACAAAAAAAATGAAGATTAGTACTAGAATC
322 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC
* * * * * *
2101915 CACGTTTGTTTCATTAGAGGCACGAATTTAGACTTAACAAAAATTGGTGGGAAAAAAGCCTTTCT
387 CATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCT
*
2101980 TGCGAAACCAAAGCATTAATATGA
452 TGCGAAACCAAAGCATCAATATGA
* * * * * *
2102004 TGTGTCCAAATGAGAAGACTGTGTTTATGGAGGCTAATCCTGAAAA-AATGGGGATTAGTATAAG
1 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATAA-
* *
2102068 TATTCATGTTTGTCGCATTTAAGAGACAAACTTT-ATTTCTATC-AAAACGGTGGAAAGAAAAGA
65 TATTCATGTTTGTCGTATTTAAGTGACAAACTTTGA-TTCTATCAAAAACGGTGGAAAGAAAAGA
* * ** * *
2102131 TTTTCTTGCGACACCGAAGCATCAATGTCATGTATCTTGTTGAAGGGAAAGTGGTTTTGCTTCCT
129 TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGGTTTTGCTTCCC
* * * *
2102196 AGCCCAT-AAAAGAATGGAGACTATTATGAGAAAT-GATGTTTGTCTTATTTAAGGGATAAACTT
194 A-ACCATGAAAAGAATGGAGACTATTACGAG-AATCGATGCTTGTCTTATTTAAGGGATGAACTT
* * * * *
2102259 TGATTTTAAGGAAAATAGGGCAATGAAAAGATTTTCATACAAAAGAAAGTCATCAATTTCGTTTA
257 TGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTA
*
2102324 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGATGA-CATTACTAGAATC
322 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC
* * * * * * *
2102388 CAGGTTTATCTCATTTGCGGCA-GAAACTTAGACTTTACCAAAATTGGCGAGAAGAAAGCCTTTC
387 CATGTTTGTCTCATTTGAGGCATG-AACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTC
* * *
2102452 TTGCAAAACTAAAGCATCGATATCG-
451 TTGCGAAACCAAAGCATCAATAT-GA
* * *
2102477 TGTATCCTAATAAGTAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATAGGGATTAGTATCAC
1 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTAT-A-
* * * * * *
2102542 AT-TTTATGTTTGTCTTATTTAAGTGTCAAACTTTGATTCTAACCAAAACGGTGGAAA-AAAAGC
64 ATATTCATGTTTGTCGTATTTAAGTGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGA
* *
2102605 TTTTCATGCGACACCAAAGCATCAATGTCATGTATCCTAATG-AGCGGAATGTGTTTTTGTCTTC
129 TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAG-GGAATGTGGTTTTG-CTTC
* * * * * * *
2102669 CCAATCTTGAAAAGAATAGAGAGTGTTGCGAGAATCAATGCTTGTCTTATTTAAGGGATGAACTT
192 CCAACCATGAAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTT
* * * *
2102734 TGATTTTAAGGAAAGTAGGGCAAAGAAAAGATTTCCACGTAAAAGAAAATCATCAATATCATTTA
257 TGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTA
* * ** *
2102799 TCCTAATGAGGAGAATATGTTTATAATGCCTAATCATGATATG-ATCGAAGATCATTACTAGAAT
322 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT-GAAGATCATTACTAGAAT
* *
2102863 CCATGTTTGTCTCAATTGAGACATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAAGCCTTT
386 CCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGG-AAAAAAGCCTTT
* *
2102928 CTTGCAAAACCAAAGCACCAATATGA
450 CTTGCGAAACCAAAGCATCAATATGA
* * * * * *
2102954 CGTATCCTAATGAGAAGACTAT-ATTATGGTG-CGAATTCTAGAAAAGAACGGGGATTAGCATGA
1 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTA-AAAAGAATGGGGATTAGTAT-A
* * ** * *
2103017 GTATTCACGTTTGTCAAATTTAAGAGACAAACTTTGATTCTATCAGAAAATGGTGGAAAGAAAAG
64 ATATTCATGTTTGTCGTATTTAAGTGACAAACTTTGATTCTATCA-AAAACGGTGGAAAGAAAAG
** ** * * * *
2103082 ATTTTCTTATGACACTGAAGCATCAATGTCATGTATTCTGATGAAAGGAATGTGCTTTTGCTTCC
128 ATTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGGTTTTGCTTCC
** * * * * *
2103147 CAGTC-TAGAAAAGAATGGAGACTATTACAAGAAACGATGCTTGCCTTATTTAAAGGATAAACTT
193 CAACCAT-GAAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTT
* * * * * *
2103211 CGATTTTAAGGAAAATAAGGAAAAAAAAAGATTTTCATGCAAAAGAAAATCATCAATTTCGTTTA
257 TGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTA
* * *
2103276 TCCTAATGAGGAGAATGTGTTTGTAGTGCCTAATTACAAAATGAATGAAGGTCATTACTAGAATC
322 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC
* ** * * * * * *
2103341 CATGTTTGTCTCATTT-ACAGCACAAACTTAGAATTTTCAAAAATTAGTCAGAAAAAAAGCCTTG
387 CATGTTTGTCTCATTTGA-GGCATGAACTTAGACTTTACAAAAATTGGT-GGGAAAAAAGCCTTT
* *
2103405 CTTGCGAAACCAAAGCATTAATATGG
450 CTTGCGAAACCAAAGCATCAATATGA
* * *
2103431 TGTATCCTAGTGAGAAGACAATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATAAG
1 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATAA-
* * * * *
2103496 TATTCATGTTAGTCGTATTTAAGTGACAAACTTTAATTCTATAAAAAATGGTGGAAA-AAAAGCT
65 TATTCATGTTTGTCGTATTTAAGTGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGAT
* * *
2103560 TTTCTTGTGACACCAAAGCATCAATGCCATGTATCCTAATGAAGGGAATGT-GTTTTGGCTTCCT
130 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGGTTTT-GCTTCCC
* * * * * * * * * *
2103624 AATCTTGGAAAGAATGGAGATTGTTATGAGAATCGATGCATGTCCTATTTAGGGGATGAATTTTG
194 AACCATGAAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTG
* * * * *
2103689 ATTTTAAAGAAAGTAGGGTAAAGAAAAGATTTTCATACAAAAGAAAATCATCAATGTCATTTATC
259 ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATC
* * * * *
2103754 CTAATAAGGATAATGTGTTTATAGTGCCTAATTAC--AATGATTGAAGATCATTACCAGAATCCA
324 CTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA
* * *
2103817 TGTTTGTCTCATTAGAGGCATGAACTTATACTATACAAAAATTGGTGGGAAAAAAGCCTTTCTTG
389 TGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTG
*
2103882 CGAAACCAATGCATCAATATGA
454 CGAAACCAAAGCATCAATATGA
** ** * * *
2103904 TGTATCCTAATGAGAAGACTATGTTTATTATGCCTAATCCTGGAAAGAACGGGGATTAGGATGAG
1 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTAT-AA
* * ***
2103969 TATTCATGCTTGTCGAATTTAA-TAGACAAACTTTGATTCTA-CAAAAAATAATGGAAAGAAAAG
65 TATTCATGTTTGTCGTATTTAAGT-GACAAACTTTGATTCTATC-AAAAACGGTGGAAAGAAAAG
* * * * * *** * *
2104032 ATTTTCTTGCAACACCGAAGCATCAACGTCATATATCCTGATGAAGGGAATGCATTTTTTCTTCA
128 ATTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGGTTTTGCTTCC
* * ** * *
2104097 TAATCCA-GAAAATAATGGAGACTATTGTGAGAA-AGATGCATGTCTTATT
193 CAA-CCATGAAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATT
2104146 GTCGCAACGT
Statistics
Matches: 1782, Mismatches: 314, Indels: 93
0.81 0.14 0.04
Matches are distributed among these distances:
472 134 0.08
473 334 0.19
474 361 0.20
475 182 0.10
476 311 0.17
477 334 0.19
478 119 0.07
479 7 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (475 bp):
TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATAAT
ATTCATGTTTGTCGTATTTAAGTGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGATT
TTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGGTTTTGCTTCCCAA
CCATGAAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGAT
TTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCT
AATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
TTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCG
AAACCAAAGCATCAATATGA
Found at i:2103242 original size:477 final size:474
Alignment explanation
Indices: 2101530--2104083 Score: 2903
Period size: 477 Copynumber: 5.4 Consensus size: 474
2101520 ATCGATAACG
* * * * *
2101530 TGTATTCTAAAGAGAAGACTATGTTTATGGTGCCTAATCCT-AAAGAGAGTAGGGATTAGTATCA
1 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAA-AGAATGGGGATTAGTATAA
* * *
2101594 CTATTCATGTTTGTCGTATTTAAGTAG-CAAACTTTGATTCTATCAAAAACGATAGAAAGAAAAG
65 GTATTCATGTTTGTCGTATTTAAG-AGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAG
* * * * * *
2101658 CTTTTCTTTCGACAACAAAGCATCAATTTCAAGTATCTTAAT-AAGGGGAATGTGTTTTGGCTTC
129 ATTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAA-GGGAATGTGTTTT-GCTTC
* * *
2101722 CCAATCTTGAAAACAATGGAGATTGTTACGAGCATCGATGCTTGTCTTATTTAAGGGATGAACTT
192 CCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTT
* * * * * *
2101787 TGATTTTAAGGAAATTAGGG-TAA-ATAAGATTTCCATGCAAAAGAAAATAATTAATATCATTTA
257 TGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTA
* * * * ** * *
2101850 ACCTAATGAGGAGAATTTTTTTATAGTGCCAAATCACAAAAAAAATGAAGATTAGTACTAGAATC
322 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC-AAAATGATGAAGATCATTACTAGAATC
* * * *
2101915 CACGTTTGTTTC-ATTAGAGGCACGAATTTAGACTTAACAAAAATTGGTGGGAAAAAAGCCTTTC
386 CATGTTTGTCTCAATTAGAGGCA-GAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTC
*
2101979 TTGCGAAACCAAAGCATTAATATGA
450 TTGCGAAACCAAAGCATCAATATGA
* * * * *
2102004 TGTGTCCAAATGAGAAGACTGTGTTTATGGAGGCTAATCCTGAAAA-AATGGGGATTAGTATAAG
1 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATAAG
*
2102068 TATTCATGTTTGTCGCATTTAAGAGACAAACTTT-ATTTCTATC-AAAACGGTGGAAAGAAAAGA
66 TATTCATGTTTGTCGTATTTAAGAGACAAACTTTGA-TTCTATCAAAAACGGTGGAAAGAAAAGA
* * ** * *
2102131 TTTTCTTGCGACACCGAAGCATCAATGTCATGTATCTTGTTGAAGGGAAAGTGGTTTTGCTTCCT
130 TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGT-GTTTTGCTTCCC
** * * * * *
2102196 AGCCCAT-AAAAGAATGGAGACTATTATGAGAAAT-GATGTTTGTCTTATTTAAGGGATAAACTT
194 A-ATCTTGAAAAGAATGGAGACTGTTACGAG-AATCGATGCTTGTCTTATTTAAGGGATGAACTT
* * * * *
2102259 TGATTTTAAGGAAAATAGGGCAATGAAAAGATTTTCATACAAAAGAAAGTCATCAATTTCGTTTA
257 TGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTA
*
2102324 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGATGA-CATTACTAGAATC
322 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG-ATGAAGATCATTACTAGAATC
* * * * * * * *
2102388 CAGGTTTATCTC-ATTTGCGGCAGAAACTTAGACTTTACCAAAATTGGCGAGAAGAAAGCCTTTC
386 CATGTTTGTCTCAATTAGAGGCAG-AACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTC
* * *
2102452 TTGCAAAACTAAAGCATCGATATCG-
450 TTGCGAAACCAAAGCATCAATAT-GA
* * * *
2102477 TGTATCCTAATAAGTAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATAGGGATTAGTATCAC
1 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTAT-A-
* * * * * *
2102542 A-T-TTTATGTTTGTCTTATTTAAGTGTCAAACTTTGATTCTAACCAAAACGGTGGAAA-AAAAG
64 AGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAG
* *
2102604 CTTTTCATGCGACACCAAAGCATCAATGTCATGTATCCTAATG-AGCGGAATGTGTTTTTGTCTT
129 ATTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAG-GGAATGTG-TTTTG-CTT
* * * *
2102668 CCCAATCTTGAAAAGAATAGAGAGTGTTGCGAGAATCAATGCTTGTCTTATTTAAGGGATGAACT
191 CCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACT
* * * *
2102733 TTGATTTTAAGGAAAGTAGGGCAAAGAAAAGATTTCCACGTAAAAGAAAATCATCAATATCATTT
256 TTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTT
* * ** *
2102798 ATCCTAATGAGGAGAATATGTTTATAATGCCTAATCATGATATGATCGAAGATCATTACTAGAAT
321 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAT-GAAGATCATTACTAGAAT
*
2102863 CCATGTTTGTCTCAATT-GAGACATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAAGCCTT
385 CCATGTTTGTCTCAATTAGAGGCA-GAACTTAGACTTTACAAAAATTGGTGGG-AAAAAAGCCTT
* *
2102927 TCTTGCAAAACCAAAGCACCAATATGA
448 TCTTGCGAAACCAAAGCATCAATATGA
* * * * * * *
2102954 CGTATCCTAATGAGAAGACTAT-ATTATGGTG-CGAATTCTAGAAAAGAACGGGGATTAGCATGA
1 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT-GAAAAGAATGGGGATTAGTATAA
* ** *
2103017 GTATTCACGTTTGTCAAATTTAAGAGACAAACTTTGATTCTATCAGAAAATGGTGGAAAGAAAAG
65 GTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCA-AAAACGGTGGAAAGAAAAG
** ** * * *
2103082 ATTTTCTTATGACACTGAAGCATCAATGTCATGTATTCTGATGAAAGGAATGTGCTTTTGCTTCC
129 ATTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG-TTTTGCTTCC
* * * * * * * * *
2103147 CAGTCTAGAAAAGAATGGAGACTATTACAAGAAACGATGCTTGCCTTATTTAAAGGATAAACTTC
193 CAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTT
* * * * *
2103212 GATTTTAAGGAAAATAAGGAAAAAAAAAGATTTTCATGCAAAAGAAAATCATCAATTTCGTTTAT
258 GATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTAT
* * *
2103277 CCTAATGAGGAGAATGTGTTTGTAGTGCCTAATTACAAAATGAATGAAGGTCATTACTAGAATCC
323 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG-ATGAAGATCATTACTAGAATCC
* * * * * * * * *
2103342 ATGTTTGTCTCATTTACA-GCACAAACTTAGAATTTTCAAAAATTAGTCAGAAAAAAAGCCTTGC
387 ATGTTTGTCTCAATTAGAGGCA-GAACTTAGACTTTACAAAAATTGGT-GGGAAAAAAGCCTTTC
* *
2103406 TTGCGAAACCAAAGCATTAATATGG
450 TTGCGAAACCAAAGCATCAATATGA
* *
2103431 TGTATCCTAGTGAGAAGACAATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATAAG
1 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATAAG
* * * * * *
2103496 TATTCATGTTAGTCGTATTTAAGTGACAAACTTTAATTCTATAAAAAATGGTGGAAA-AAAAGCT
66 TATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGAT
* * *
2103560 TTTCTTGTGACACCAAAGCATCAATGCCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCTA
131 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTT-GCTTCCCA
* * * * * * *
2103625 ATCTTGGAAAGAATGGAGATTGTTATGAGAATCGATGCATGTCCTATTTAGGGGATGAATTTTGA
195 ATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGA
* * * * *
2103690 TTTTAAAGAAAGTAGGGTAAAGAAAAGATTTTCATACAAAAGAAAATCATCAATGTCATTTATCC
260 TTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCC
* * * *
2103755 TAATAAGGATAATGTGTTTATAGTGCCTAATTAC--AATGATTGAAGATCATTACCAGAATCCAT
325 TAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA-TGAAGATCATTACTAGAATCCAT
* *
2103818 GTTTGTCTC-ATTAGAGGCATGAACTTATACTATACAAAAATTGGTGGGAAAAAAGCCTTTCTTG
389 GTTTGTCTCAATTAGAGGCA-GAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTG
*
2103882 CGAAACCAATGCATCAATATGA
453 CGAAACCAAAGCATCAATATGA
** * * * *
2103904 TGTATCCTAATGAGAAGACTATGTTTATTATGCCTAATCCTGGAAAGAACGGGGATTAGGATGAG
1 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATAAG
* * * ***
2103969 TATTCATGCTTGTCGAATTTAATAGACAAACTTTGATTCTA-CAAAAAATAATGGAAAGAAAAGA
66 TATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATC-AAAAACGGTGGAAAGAAAAGA
* * * * *
2104033 TTTTCTTGCAACACCGAAGCATCAACGTCATATATCCTGATGAAGGGAATG
130 TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATG
2104084 CATTTTTTCT
Statistics
Matches: 1738, Mismatches: 298, Indels: 88
0.82 0.14 0.04
Matches are distributed among these distances:
472 134 0.08
473 333 0.19
474 320 0.18
475 178 0.10
476 307 0.18
477 336 0.19
478 123 0.07
479 7 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (474 bp):
TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATAAG
TATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGAT
TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGCTTCCCAA
TCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGAT
TTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCT
AATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGATGAAGATCATTACTAGAATCCATGT
TTGTCTCAATTAGAGGCAGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGA
AACCAAAGCATCAATATGA
Found at i:2112456 original size:13 final size:13
Alignment explanation
Indices: 2112440--2112465 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2112430 TAGGGCAACT
2112440 TTGTATCGATACA
1 TTGTATCGATACA
2112453 TTGTATCGATACA
1 TTGTATCGATACA
2112466 ACACTTACGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:2116157 original size:473 final size:475
Alignment explanation
Indices: 2112809--2137143 Score: 23496
Period size: 475 Copynumber: 51.3 Consensus size: 475
2112799 GGAGTCTACA
* * * * * *
2112809 CTTATTTATGGGATGAACTTCGATTTTAAGGAGAATAGGGCAAA-AAAAATATTTCCCTGTAAAA
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAGAT-TTT-CATGCAAAA
* * *
2112873 GAAAATCATCAATTTCATTTATCCTAATGAGGAGAATGTGTTTATAATACCTAATCACAAAATGA
64 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
* * * * * *
2112938 ATGAAGACCATTACTAGAATCGATGTTCGTCTCCTTCGAGACACGAACTTAGACTTTACAAAAAT
129 ATGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAT
* * * * * * ** * * *
2113003 TGGTAGGAAGAAAGCTTTTCTAGCAAAACCAAAGCATCTATACCATGTGTCATAATAAGAAGACT
194 TGGTGGGAA-AAAACCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACT
* * * *
2113068 ATGTTTATGGTTCTTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCCTATTT
258 ATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTT
* * * * * * * * * *
2113133 AAGTGTCAAATTTTGATTGTAACCAAAACGGTGGAAAAAAAAGCTTTTTTTGCAACACCAAAGCA
323 AAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
* * * ** *
2113198 TCAATGTCATGTACCCTAATG-AGCAGAATGTGTTTAGGCTTCCTGATCTTGAAAAGAATGGAGA
388 TCAATGTCATGTATCCTAATGAAG-GGAATGTGTTTTGGCTTCCCAATCTAGAAAAGAATGGAGA
* * *
2113262 GTGTTACT-AG-AATCAATGCTTGT
452 CTATTA-TGAGAAATCGATGCTTGT
* * *
2113285 CTTATTTAGGGGATGAACTTTGATTTTAAGGAAAATAAGGCAGAAGAAAGATTTCCATGCAAAAG
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCA-AAGAAAGATTTTCATGCAAAAG
*
2113350 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAACATGAA
65 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * ** * * * * *
2113415 AGAAGATCGTTGTTAGAATCAATGTTTGTTTCATTTAAGACACAAACTTAGATTTTACAAAAATT
130 TGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATT
* * * * *
2113480 GGTGGGGAAAAAGCTTTTCTTGTGAAACCAAAGCATTAATATGATGTATCCTAATGAAAAGACTA
195 GGT-GGGAAAAAACCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTA
* * * *
2113545 TGTTTATGATGCCTAATCC-AGAAAAGAATTGGGATTAGCATGAGTATTCATGTTTGTCGAATTT
259 TGTTTATGGTGCCTAATCCTA-AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTT
* * * * **
2113609 AAGAGACAAACTTTGATTCTATCAAAAATGGTAGAAAGAAAGGCTTTTGTTGCAACACCAAAATA
323 AAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
* * * *
2113674 TCAATGTCATGTATCCTAAT-AAGAGTAATGTGTTTTGGCTTCCCAATCTTGAAAACAAGGGAGA
388 TCAATGTCATGTATCCTAATGAAG-GGAATGTGTTTTGGCTTCCCAATCTAGAAAAGAATGGAGA
* *
2113738 CTATTA-CAAAAATCGATGCTTGT
452 CTATTATGAGAAATCGATGCTTGT
* * * *
2113761 CTTATTTAGGGGATGAACTTTGATTTTAAGGAAAGTAGGGCGAAGAAAAGATTTCCATGACAAAA
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG-AAAGATTTTCATG-CAAAA
* * * * *
2113826 -AAAATCATCAATATTATTTATCCTAATGAGAAAAATGTGTTTATAGTGCTTAATCATAAAATGA
64 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
* * * * *
2113890 ATGAAGATCATTACTAGAATCAATGTTTATCTCGTTTGAGGCACAAACTTAGACTTTTCCAAAAT
129 ATGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAT
*** * *
2113955 TGGCAAGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCG-TGTATCCTAATGAGAAGAC
194 TGGTGGGAA-AAAACCTTTCTTGCGAAACCAAAGCATCAATAT-GATGTATCCTAATGAGAAGAC
* * *
2114019 TATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGCCATATT
257 TATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATT
* *
2114084 TAAGAGA-AAACTTTGATTCTATAAAAAATGGTGTAAAGAAAAGCTTTTCTTGCGACACCAAAGC
322 TAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC
* * * *
2114148 ATCAATGTCATGTATCCTAAGGAGGGGGATGTGTTTTGGCTTCCCAATCTTGAAATAG-A---A-
387 ATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTAGAAA-AGAATGGAG
* * *
2114208 ACTGTTATG-GGAATCGATGCTTAT
451 ACTATTATGAGAAATCGATGCTTGT
* * * *
2114232 CTTATTTAAGTGATGAGCTTTGATTTTAAGGAAAATAGTGCAAAAAAAAGATTTTCATGCAAAAG
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGC-AAAGAAAGATTTTCATGCAAAAG
* * * *
2114297 AAAATCATCAATATCGTTTATCCTAATGAGAAGAATGTGATTATAGTGCCTAATCACAACATGAA
65 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * *
2114362 TGAAGATTATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATT
130 TGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATT
* * * *
2114427 GGTGGGAAAAAAGCTTTTCTCGCAAAACCAAAGCATTAATATGATGTATCCTAATGAGAAGACTA
195 GGTGGGAAAAAA-CCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTA
* * * * *
2114492 TGTTTATGGTGCCTAATCCTTAAATGAATAGGCATTAGTATG-GCTATTCTTGTTTGTCGTATTT
259 TGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAG-TATTCATGTTTGTCGTATTT
* * * * * ** *
2114556 AATAGTCAAACTTTGATTCTATCAAAAATGGTTGAAGGAAAGGCTTTTCTCACAACACCAAAGCA
323 AAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
* * ** * * * *
2114621 TCAATATCATGTATCCTAATGAGGGGAATGCATTTTGGCTTCCCAATCTTGAAAACAATAGAGAT
388 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTAGAAAAGAATGGAGAC
* * *
2114686 TGTTACGAG-AATCGATGCTAGT
453 TATTATGAGAAATCGATGCTTGT
* *
2114708 CTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGCAAA-AACGATTTGT-ATGCAAAAG
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAGATTT-TCATGCAAAAG
* * * * *
2114771 AAAATAATTAATATCATTTATTCGAATGAGGAGAATTTGTTTATAGTGCCTAATCACAAAATGAA
65 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
** * * *
2114836 TGAAGATCATTACTAGAATCCCTGTTTGTCTCATTAGAGTCACGAACGTAGACTTTACAAAAATT
130 TGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATT
* * * * *
2114901 GGTGGGAAAAAAGCCTTGCTAGTGAAACCAAAGCATCAATATGATATATCCTAATAAGAAGACTA
195 GGTGGGAAAAAA-CCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTA
* ** * * *
2114966 TGTTTATGGTGCCTAATCCTAGAAAGAATAAGGATTAGTATAAGTATTCATGTTTATCTTATTTA
259 TGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTA
* ** ** * *
2115031 AGAGATAAGTTTTGATTCTATCAAAAACAGTGGAAAGAAAAGATTTTCTTGCGACACCGAAGCAT
324 AGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAT
* * * * *
2115096 TAATGTCATGTATCCTGATGAAGGGAATATGTTTTTGCTTCCCAATCTAGAAAAGTATGGAGACT
389 CAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTAGAAAAGAATGGAGACT
*
2115161 ATTATGAGAAA-CGATGCTTAT
454 ATTATGAGAAATCGATGCTTGT
* * *
2115182 CTTATTTAAAGGATGACCTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG-AAAGATTTTCATGCAAAAG
* * * * * *
2115247 TTAAATTATCAATTTTATTTATCGTAATGAGGAAAATGTGTTTACT-GTGCCTAATCACAAAATG
65 -AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA-TAGTGCCTAATCACAAAATG
** * * * *** * * ** **
2115311 GTTGAAGGTCATAACTAGAATCCATGTTCACCT-TTTTCTAGATAAAAACTTAGACTTTACAAAA
128 AATGAAGATCATTACTAGAATCAATGTTTGTCTCATTT-GAGGCACGAACTTAGACTTTACAAAA
* * *
2115375 ATTGGTGGAAAAAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATGATGTATCCTAATAAGAAG
192 ATTGGTGG-GAAAAAA-CCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAG
* * * * * * * ** *
2115440 ACTACGTTTATGCTACCTAATCCAGAAAAAAACAT--GGATTAGCATGAGTATTTACATTTGTCA
255 ACTATGTTTATGGTGCCTAATCC-TAAAAAGA-ATGGGGATTAGTATGAGTATTCATGTTTGTCG
* * * * * * * * * * *
2115503 AATTTAAAAGAAAAACTTTGATTCT-TTAAAAAAGGTAGAAAAAAAAGATTTTCTTGTGACATCG
318 TATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCA
* * * * *
2115567 AAGCACCAATGTCATATATCCTAATGAAAGGAATATGTTTTAGCTTCCCAATCTAGAAAAGAATG
383 AAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTAGAAAAGAATG
*
2115632 GAGGCTATTATGAGAAA-CGATGCTTGT
448 GAGACTATTATGAGAAATCGATGCTTGT
* * * *
2115659 CTTATTTAAGGAATGAACTTTGATTTTAAGAAAAATCA-AGCAAAG-AAGATTTTCATGTAAAAG
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT-AGGGCAAAGAAAGATTTTCATGCAAAAG
* * * * * * **
2115722 AAAATCATTATTATCATTTACCCTAATGAGGAGAATTTGATTATAGTGCCTAATCCCAAAATGGG
65 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * *
2115787 TGAAGATCATTACTAGAATCCATGTTTGTCTCATTAGAGGTACGAACTTAGACTTTACAAAAATT
130 TGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATT
* *
2115852 AGTGGGAAAAAACCTTTCTTACGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTAT
195 GGTGGGAAAAAACCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTAT
* * *
2115917 GTTTATGGTGCTTAATCCTAAAAAGAATGGGGATTAGTATAAGGATTCATGTTTGTCGTATTTAA
260 GTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAA
* * *
2115982 GAGACAAA-TATTGATTCCATCAAAAATGGTAGAAAGAAAAGTTTTTCTTGCGACACCGAAA-CA
325 GAGACAAACT-TTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACC-AAAGCA
* * * ** * * * *
2116045 TTAATGTCTTGTATCTTGGTGAAGGGAAAGTGTTTTGGCTTCCCAATCCAGAAAAGGATGGACAC
388 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTAGAAAAGAATGGAGAC
*
2116110 TATTATGAGAAAT-GATGCTTAT
453 TATTATGAGAAATCGATGCTTGT
*
2116132 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGGAAAGATTTCCATGCAAAAG
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAA-GAAAGATTTTCATGCAAAAG
* * * * ** * * ** *
2116197 AAAACCGTCAATATCATTTATTCTAATTAGGAGAATGCATTTAGACTGTGTAA-CAACCAAATGA
65 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC-ACAAAATGA
* *
2116261 ATGAAGATCATTACAAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACCAAAAT
129 ATGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAT
* *
2116326 TGGTGGGAAGAAAACCTTTCTTGCGAAACCAAAGCATCGATATCATGTATCCTAATGAGAAGACT
194 TGGTGGGAA-AAAACCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACT
* * * * * *
2116391 ATGTTTATGGTGCCTAGTCCTTAAAAGAATGGGGATTAGTATGACTATTCTTGTTTGTCATATTA
258 ATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTT
* * *** * * *
2116456 AAGAGACAAACCTTGATTTTATCAAAAACAATGAAAAGAAAAGCTTTTCTTGCTAGACCAAAGCA
323 AAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
* *** * * *
2116521 TCAATGTCCTGTATCCTGGGGAAGGGAATGTGTTTCGGCTTCCTAATCTAAAAAAGAATGGAGAC
388 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTAGAAAAGAATGGAGAC
*
2116586 TATTAAGAGAAA-CGATGCTTGT
453 TATTATGAGAAATCGATGCTTGT
* * * * *
2116608 ATTATTTACGGGATAAACTTTGATTTTAAGGAAAATAGGGAAAAGAAAGA-TTCCATGCAAAAGA
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAGATTTTCATGCAAAAGA
* * * *
2116672 AAATCATCAATATCATTTATCCTAATGAGGAGAATGCGTTTAGAGTGCGTAACCACAAAATGAAT
66 AAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
* * * *
2116737 GAAGATCATTACTAAAATCAATGTTTGTCTCATTTGAGGCACAAACATAGACTTTACCAAAATTG
131 GAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTG
** * * * *
2116802 GCAGGAAGAAAGCCTTTCTT-CGAAACTC-AAGCATCGATGTCG-TGTATCGTAATGAGAAGACT
196 GTGGGAA-AAAACCTTTCTTGCGAAAC-CAAAGCATCAATAT-GATGTATCCTAATGAGAAGACT
* * * * *
2116864 ATGTTTATGGTGCCTAATCCTTAAAAGAATAGGGACTAGTATGACTATTCTTGTTTGTCGTATTT
258 ATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTT
* * *
2116929 -AGTAGATAAACTTTGAATCTATCAAAAATGGT-GTAAGAAAAGCTTTTCTTGCGACACCAAAGC
323 AAG-AGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC
* * *
2116992 ATCAATGTCATGTATCCTAATGAGGGGAATGCGTTTTGGCTTCCCAATCTTGAAAAGAATGG-GA
387 ATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTAGAAAAGAATGGAGA
** *
2117056 CTGCTATGAG-AATCGAGGCTTGT
452 CTATTATGAGAAATCGATGCTTGT
* *
2117079 CTTTTTTAAGGGGTGAACTTTGATTTTAA-GAAAACTAGGGCAAAGAAAAGA-TTTCTATGCAAA
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAA-TAGGGCAAAG-AAAGATTTTC-ATGCAAA
* *
2117142 GGAAAATCATCAATATCATTTATCCTAATGACGAGAATGTGTTTATAGTGCCTAATCACAAAATG
63 AGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG
* * * * * * *
2117207 AATAAATATCATTTCTAGAATCCA----TGTCTCTTTTGAGACACGTACTTAGACTTTACAAAAA
128 AATGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAA
* *
2117268 TTGGTGGGAAAAAAGCC-TTCTTGCGAAACCAAAGCATCAATATGATGCATCCTAATGAGAATAC
193 TTGGTGGGAAAAAA-CCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGAC
* * * * ** * * *
2117332 TAAGTTTATGGTGCCTAATCCTTAAAGGAACGATGATTAGTGTGAGTATTCCTGTTTGTCATATT
257 TATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATT
* * * * *
2117397 TAA-AGGACAAACTTTGATTCTATCAAAAACGATAGAAAGAAAAGCTTTTCTTGTGACTCCAAAG
322 TAAGA-GACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAG
* * * * ** * * ** **
2117461 CATAAATTTCATGTCTCCTAATG-AGGAAATACGTTTTGGCTTCCTAATGT--TTAAGAATCAAG
386 CATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTAGAAAAGAATGGAG
* * *
2117523 ACTATTATGA-TAATCAATGCATGT
451 ACTATTATGAGAAATCGATGCTTGT
* * * *
2117547 TTTATTT-AGGGAATGAACTTTGATTTCAAGGAAAATAGGGCAAAGAAAAAAATTTCATGCAAAA
1 CTTATTTAAGGG-ATGAACTTTGATTTTAAGGAAAATAGGGCAAAG-AAAGATTTTCATGCAAAA
* * *
2117611 GAAAATCATTAATATCATTTTTCCTAATGAGGAGAATGTGTTTATAGTGCCTAAGCACAAAATGA
64 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
* * * * **
2117676 ATGAAGAACATTACTAGAATTAATGTTTGTCTTATTTCAGGCGTGAACTTAGACTTTACAAAAAT
129 ATGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAT
*** * * *
2117741 T-GACAGAAAGAAAGCCTTTCTTAC-AAATCCAAGGCATCAATATGATGTATCCAAATGAGAAGA
194 TGGTGGGAAA-AAA-CCTTTCTTGCGAAA-CCAAAGCATCAATATGATGTATCCTAATGAGAAGA
* * * ** * ** *
2117804 CTATGTTTACGGT-CTCTAATCCTGAAAAGAACGATGATTAGCATGAACATTCATGTTTGTCGAA
256 CTATGTTTATGGTGC-CTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTA
* * * * * * *
2117868 TTTAGGAGACAAACTTTAATTCTATCAAAAATGGTGGAAAGAAAAGATTTTTTTGCAACATCGAA
320 TTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAA
* * ** * * ** * *
2117933 GCATCAACGTCACGTATCCCGATGAA-GGAATATGCTTTCACTTTCCAATATAGAAAAGAATGGA
385 GCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTAGAAAAGAATGGA
*
2117997 GACTGTTATGAGAAA-CGATGCTTGT
450 GACTATTATGAGAAATCGATGCTTGT
* * *
2118022 ATTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGGAAAGACTTCCATGCAAAAG
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAA-GAAAGATTTTCATGCAAAAG
* * * *
2118087 AAAATCATCAATATAATTTATCCTAATGAGGAGAATGTGTTTAGAGTGCGTAATCATAAAATGAA
65 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * * * * *
2118152 TGAAGATCATTACTAGAATGATTGTTTGTTTCATTTGAAGCATGAACTTAGACTTTACCAAAATT
130 TGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATT
** * * * * * * *
2118217 GGCAGGAAGAAAGCCTTTTTTGCGAAATCAAAGGATCGATATCATGTATCCTAATAAGAAGACTA
195 GGTGGGAA-AAAACCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTA
* * * * * * *
2118282 TGTTTAT-GTGCCTAATCCTTAAAATAATGAGGACTAGTATGACTATTCTTGTTTGTTGTATTTA
259 TGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTA
* * * * * **
2118346 AGAGATAAACTTTGATTCTATCGAAAACGGTGGAAAGAAAAGTTTTTCCTATGACACCAAAGCAT
324 AGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAT
* * * ** *
2118411 CAATGTCATGTATCCTAATGAGGGGAATTTATTTTGGCTTCTTAATCTTGGAAAA-AATGGAGAC
389 CAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATC-TAGAAAAGAATGGAGAC
** * *
2118475 TGCTACGAG-AATCGATACTTGT
453 TATTATGAGAAATCGATGCTTGT
* * * * * * *
2118497 CTTATTTAAGGGACGAACTTTGATTTTGAGCAAAATAAGGCATAGAAAAGATTTTTATGCAAAGG
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG-AAAGATTTTCATGCAAAAG
* * * **
2118562 AAAATCATCAATATCATTTATTCTAATGACGAGATTGTGTTTATAGTGCCTAATCACAACTTGAA
65 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* ** * * * * * *
2118627 TAAAGGCCATTACTAGAATCCATGTTTCTCTCATTTAATGCTCGAACTTAGACTTTACGAAAATT
130 TGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATT
* *
2118692 GGTTGGAAAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTA
195 GGTGGGAAAAAA-CCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTA
* * *
2118757 TGTTTATGGTGCCTAATCCTGAAAAGAATGAGGATTAGTAT-AGTCTATTCATGTTTGTTGTATT
259 TGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAG--TATTCATGTTTGTCGTATT
* * * *
2118821 TAAGAGTCAAA-TTTGATTCTATCAAAACT-ATGGAAAGAAAAGCTTTTCTTGTGACACCAAAGC
322 TAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC
* * * ** *
2118884 ATCAATGTCACGTATCCTAATGAAGGGAATATGTTTTGGCTTCCCAATGT--TTAAGAATCGAGA
387 ATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTAGAAAAGAATGGAGA
* * * *
2118947 TTGTTACGAG-AATCGATGCATGT
452 CTATTATGAGAAATCGATGCTTGT
* *
2118970 CTTATTT-AGGGATGAACTTTGATTTTAAGAAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAG
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG-AAAGATTTTCATGCAAAAG
* * *
2119034 AAAATCATCAATATCATTTTTCCTATTGA-GAAAAGTGTGTTTATAGTGCCTAATCACAAAATGA
65 AAAATCATCAATATCATTTATCCTAATGAGGAGAA-TGTGTTTATAGTGCCTAATCACAAAATGA
* ** * * *
2119098 ATGATGAAAATTACTAAAATCAATGTTTGTCAT-ATTTGAGGCACGAACTTAAACTTGACAAAAA
129 ATGAAGATCATTACTAGAATCAATGTTTGTC-TCATTTGAGGCACGAACTTAGACTTTACAAAAA
*** ** * * * * * * *
2119162 TTGGCAAGAAGAAAGGCTTTCTTACAAAAACAAAGCGTCGATATCG-TATATCCTAATAAGAAGA
193 TTGGTGGGAA-AAAACCTTTCTTGCGAAACCAAAGCATCAATAT-GATGTATCCTAATGAGAAGA
* * * * * * *
2119226 C-AGTGTTTATAGTGCCTAATCCTAAATAGAATTGGGATTAGTATGACTATTTATGTTTGACTTA
256 CTA-TGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTA
* * * * * * * * *
2119290 TTTAGGAGACACACCTTGATTCTATCAACAATGGCGGAAAGAAAGGCTTTTCTTGTGACACTAAG
320 TTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAA
* * *
2119355 GCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTGGCTTCCTAATCTTAAAAAAGAATGG
385 GCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATC-TAGAAAAGAATGG
* * * *
2119420 AGATTGTTACGAG-AATCGAAGCTTGT
449 AGACTATTATGAGAAATCGATGCTTGT
* ** * *
2119446 CTTATTTAATGGACAAACGTTGATTTTAAGGAAAATAGGGCAAAGAAA-ATATTTCCATGCCAAA
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAGAT-TTT-CATGCAAAA
* * ** * *
2119510 GAAAATCATCAAGATCATTTATCATAAAAAGGAGAATGTGTTTATAGCGCCTAATCACAAAACGA
64 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
* * * * * * * *
2119575 ATAAACATCATTTCTAGAATCCATATTTGTCTCTTTTGAGACATGAACTTAGACTTTACAAAAAT
129 ATGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAT
* * * * *
2119640 TGGTGAGGAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCGAAGGAGAATACA
194 TGGTG-GGAAAAAACCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACT
* * *
2119705 ATGTTTATGGTGCCTAATCTTGAAAAGAAT-GGGATTAGTATAAGTATTCATGTTTGTCGTATTT
258 ATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTT
* ** *
2119769 AAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGATTTTCTTGCGATGCCGAAGCA
323 AAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
* ** * * *
2119834 TCAATGTCATGTAAT-TTGTTGAAGGGAATGTGTATTT-GCTT-CTAGTCCAGAAAAGAATGGAG
388 TCAATGTCATGT-ATCCTAATGAAGGGAATGTGT-TTTGGCTTCCCAATCTAGAAAAGAATGGAG
* * *
2119896 ACGATTATGAGAAAT-GATGTTTAT
451 ACTATTATGAGAAATCGATGCTTGT
* ** * * *
2119920 CTTATTTAAAGGATGAACTTCAATTTTAAGGAATATAGGGCAAAGAAAAGATTTCCATTCAAAAG
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG-AAAGATTTTCATGCAAAAG
* *
2119985 AAAGTCATCAATTTCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
65 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * * * * * * * *
2120050 TGATG-GCATT-TTCAGAATCTAGGTTTATCTCATTTGCGGCACGAACTTAGACTTTACCAAACT
130 TGAAGATCATTACT-AGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAT
* * * * * * * * ** * *
2120113 CGGCGAGACGAAAGCCTTTCTTGCAAAACTAAAGCATCGATATCTTGTATCCTAATAAGAATACT
194 TGGTGGGA-AAAAACCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACT
* * * *
2120178 ATGTTTATGGTGCCTAATCCTAAAAAGAATAGGGATTAGTATCATTATTCATGTTTGTCTTATTT
258 ATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTT
* ** * * ** * * * *
2120243 AAGTGTTAAACTTTGATTCTAACCAAAACAGTAGAAA-AAAA-CTGTTCATGCAACACCAAAGCA
323 AAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
* * *
2120306 TTAATGTCATGTATCCTAATG-AGCGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATAGAGA
388 TCAATGTCATGTATCCTAATGAAG-GGAATGTGTTTTGGCTTCCCAATCTAGAAAAGAATGGAGA
* * ** *
2120370 GTGTTGCGAG-AATCAATGCTTGT
452 CTATTATGAGAAATCGATGCTTGT
* * * *
2120393 CTTATTTAAGGGATGAACTTTGATTTTGAGGAAAGTAGGGCAAAGAAAAGATTTCCATGCAAAAT
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG-AAAGATTTTCATGCAAAAG
* ** * * *
2120458 AAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCATGACAGGAT
65 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * * * * *
2120523 TGAAGATCTTTATTGGAATCCATGCTTGTCTCATTTGAGACACGAACTTAGACTTT--AAAAATT
130 TGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATT
* * * *
2120586 GGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGAGGTATCTTAATGAGAACAATA
195 GGTGGGAAAAAA-CCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTA
* * *** * * **
2120651 TATTTATGGTGCCAAAT-CTAGAAAAGAACATGGATTAGCATGAGTATTCACGTTTGTCAAATTT
259 TGTTTATGGTGCCTAATCCTA-AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTT
* ** * * ** * *
2120715 AGGAGACAAACTTCAATTCTATCAAAAAAGAGAGGAAAGAAAATATTTTCTTGTGACACCGAAGC
323 AAGAGACAAACTTTGATTCTATCAAAAATG-GTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC
* * * * * * *
2120780 ATCAATGTCATGTATCTTGATGAAAGGAATGTGTTTTTGCTTCCCAGTCCAGAAAACAATGGAGA
387 ATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTAGAAAAGAATGGAGA
2120845 CTATTATGAGAAA-CGATGCTTGT
452 CTATTATGAGAAATCGATGCTTGT
* * *
2120868 CTTATTTAAGGGATGAACATCGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG-AAAGATTTTCATGCAAAAG
* ** *
2120933 AAAATCATCAATTTTGTTTATCCTAATGAGGAGAATGTGTTTATAATGCCTAATCACAAAATGAA
65 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * *
2120998 TGAAGATCACTACTAGAATCAATGTTTGTCTCATTT-ATGGCACAAACTTAGACTTTTCAAAAAT
130 TGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGA-GGCACGAACTTAGACTTTACAAAAAT
* ** * * * *
2121062 TTGTGGGAAAAAGGTCTTTCTTGCGAAACAAAAGCATTAATATGGTGTATCCTAATGAGAAGACA
194 TGGTGGGAAAAA-ACCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACT
* * * *
2121127 ATGTTTATGGTGCCTAATCCTAGAAATAATGGGGATTAGTATAAGTATTCATGTTAGTCGTATTT
258 ATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTT
* * * * * *
2121192 AAGAGGCAAACTTTAATTCTATCAAAAACGGTAGAAAAAAAAACTTTTCTT-CTGACACCAAAGC
323 AAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGC-GACACCAAAGC
* * * *
2121256 ATCAATGCCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCTAATCTTGGAAAGAATGGAGA
387 ATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTAGAAAAGAATGGAGA
* * * * *
2121321 TTGTTATGAG-AATCAAAGCTTAT
452 CTATTATGAGAAATCGATGCTTGT
* * *
2121344 CTTATGTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAATTTCCATGCAAAAGA
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAGATTTTCATGCAAAAG-
* * ** *
2121409 AAAATCATCAATGTCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATTACAATTTGAT
65 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * * * *
2121474 TGAAGATCATTACCAGAATCCATGTTTGTCTCATTAGAGGCATGAACTTAGACTATACAAAAATT
130 TGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATT
* *
2121539 GGTGGGAAAAAAGCCTTTCTTGTGAAGCCAAAGCATCAATATGATGTATCCTAAT-----GA-TA
195 GGTGGGAAAAAA-CCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTA
** * ** * * * **
2121598 TGTTTATTATGCCTAATCTTGGAAAGAACGGAGATTAGCATGAGTATTCATGTTTGTCAAATTTA
259 TGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTA
* * * ** * * * *
2121663 ATAGACAACCTTTGATTCTATAAAAAACAGTGGAAAGCAAAGATTTTCTTGCAACACCGAAGCAT
324 AGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAT
* * * * * ** ** * *
2121728 AAATGTAATATATCTTGATGAAGGGAATGCATTTTTTCTTCCTAATCTAGAAAAGAATGAAGACT
389 CAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTAGAAAAGAATGGAGACT
** *
2121793 ATTGCGAGAAA-CGATGCATGT
454 ATTATGAGAAATCGATGCTTGT
** * * *
2121814 CTTATTTGTGGGATGAACTTCGTTTTTAAGGAGAATAGGGCAAAGAAAAGA-TTTCTATGCAAAA
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG-AAAGATTTTC-ATGCAAAA
* * * *
2121878 GAAAATCATCAATTTCATTTATCCTAATGAGGAGAATGTGTTTGTAGTGCCTATTCAAAAAATGA
64 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
* * *
2121943 GTGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGACACAAACTTAGACTTTACAAAAAT
129 ATGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAT
* *
2122008 TGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAAAATACT
194 TGGTGGGAAAAAA-CCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACT
* * * *
2122073 ATGTTTATGGTGCCTAATCCAAAAAAGAACT-GGGATTAGCATAAGTATTCATGTTTGTCGAATT
258 ATGTTTATGGTGCCTAATCCTAAAAAGAA-TGGGGATTAGTATGAGTATTCATGTTTGTCGTATT
* * * * * * *
2122137 TAAGATACAAACTTTGATTCTGTCAAAAATAGTGGAAAGAAAGGCTTTTATTGCGACACTAAAGT
322 TAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC
* * * **
2122202 ATCAATGTCATGTATCCTAAT-AAGAGTAATGTGTTTTGGCTTCCCAATCTTGAAAATAGGGGAG
387 ATCAATGTCATGTATCCTAATGAAG-GGAATGTGTTTTGGCTTCCCAATCTAGAAAAGAATGGAG
* *
2122266 ACTATTATGA-AAATCGATACATGT
451 ACTATTATGAGAAATCGATGCTTGT
* * * *
2122290 CTAATTT-AGGGATGAACTTTGATTTTAAGGAGAGTAGGGCAAAGAAAAGATTTCCATGACAAAA
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG-AAAGATTTTCATG-CAAAA
* * * *
2122354 GAAAATCATCAATATCACTTATCCAAATGAGAAAAATGTGTTTATAGTGCCTAATCACAAAATGA
64 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
* * * * *
2122419 ATGAAGATCATTACTAGAGTCAATGTTTATCTCATTTGAGACACGAACTTAGACTTTTCCAAAAT
129 ATGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAT
*** * * * * * *
2122484 TGGCAAGAAGAAAGCCTTTCTTGTGAAACAAAAGCATCGATATCATGTATCCTAAGGAGAAGACT
194 TGGTGGGAA-AAAACCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACT
* * * * * *
2122549 ATGTTTACGGTGCATAATCCTGAAAA-AATGGGGATTAGTATAACTATTCATGTTTGTCATATTT
258 ATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTT
* * * * * *
2122613 AAAAG-GAAACTTTGATTCTATAAAAAATGGTGGAAAAAAAAGCTTTTCTTGCAACACAAAAGCA
323 AAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
* *
2122677 TCAATGTCATGTATCCTAATG-AGGGAAATTTGTTTTGGCTTCCCAATCTTA-AAAAAAATGGAG
388 TCAATGTCATGTATCCTAATGAAGGG-AATGTGTTTTGGCTTCCCAATC-TAGAAAAGAATGGAG
* ** ** *
2122740 ATTGCTACAAG-AATCGACGCTTGT
451 ACTATTATGAGAAATCGATGCTTGT
* * * *
2122764 CTTATTTAAGGGATGAACTTGGATTTTGAGCAAAATAGGGCAAAGAAAAGA-TTTCTATGCAAAG
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG-AAAGATTTTC-ATGCAAAA
* * **
2122828 GAAAATCATCAATATCATTTAACCTAATGACGAGAATGTGTTTATAGTGCCTAATCACAACTTGA
64 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
* * * * * *
2122893 AT-AA-ATTCCATTACTAGAATCCATGTTTCTCTCATTTGATGCTCAAACTTAGACTTTACGAAA
129 ATGAAGA-T-CATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAA
* * ** ** *
2122956 ATTAGTAGGAAAAAAGCCTTTCTTATGAGGCCAAAGCATCAATATGATGTATCCTAATGAGAGGA
192 ATTGGTGGGAAAAAA-CCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGA
* * * *
2123021 CTATGTTTATGGTGCCTAATCCTGAAATGAATGGGGATTAGTAT-AGCTATTCGTGTTTGTTGTA
256 CTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAG-TATTCATGTTTGTCGTA
* * * * **
2123085 TTTAAGTGTCAAACTTTGATTCTATCAAAAACT-GTGGAGAGAAAAGTTTTTCTTGAAACACCAA
320 TTTAAGAGACAAACTTTGATTCTATCAAAAA-TGGTGGAAAGAAAAGCTTTTCTTGCGACACCAA
* * * * ** **
2123149 AGCATCAATGTCATGTATCCTAATGAAGGGAATATGTTTTGCCTTCCTAATGT--TTAAGAATCT
384 AGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTAGAAAAGAATGG
* *
2123212 AGACTGTTATGAG-AATCGATGCATGT
449 AGACTATTATGAGAAATCGATGCTTGT
* * * *
2123238 TTTATTTAA-GGATGAACTTTGATTTTAAGGAAAATAAGGTAAAGAAAAGATTTTCATTCAAAAG
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG-AAAGATTTTCATGCAAAAG
* * * *
2123302 AAAATCATCAATATCATTTTTCCTAATGAGGAAAATGTGTTTGTAGTGCCTAATCACGAAATGAA
65 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * ** **
2123367 TGATGAACATTACTAGAATCAATGTTTGTGGCATTTGAGGTGCGAACTTAGAC-TTACAAAAATT
130 TGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATT
** * * * * * *
2123431 GGTAAGAAGAAAGCCTTTCTTGC-AAGAGCAAAGCATCGATATCATATATCCTAATAAGAAGACT
195 GGTGGGAA-AAAACCTTTCTTGCGAA-ACCAAAGCATCAATATGATGTATCCTAATGAGAAGACT
* * * * * * *
2123495 ATGTTTATAGTCCCTAATCCTAAACAGAATTGGGATTAGTATGACTATTTATGTTTGTCTTATTT
258 ATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTT
* * * * *
2123560 AGGAGACAAACTTTGATTCTATCAACAACGGTGGAAAG-AAAGACTTTTCTTGCGACACCAAGGA
323 AAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAG-CTTTTCTTGCGACACCAAAGC
* * * * *
2123624 ATCAATGTCATGCATCCTAATGAA-AGAATTGTGTTTTGGTTTCCCAAACTTGAAAAGAATGGAG
387 ATCAATGTCATGTATCCTAATGAAGGGAA-TGTGTTTTGGCTTCCCAATCTAGAAAAGAATGGAG
* * ** *
2123688 ATTGTTACAAG-AATCGAAGCTTGT
451 ACTATTATGAGAAATCGATGCTTGT
* * * *
2123712 CTTATTTAAGGGATGAACTATGATTTTAAGGAAAACAGGGCAAAGAAAAAATTTCCATGCAAAAG
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG-AAAGATTTTCATGCAAAAG
* * * * * *
2123777 AAAATCATCAATATCGTTTATCTTAAAGAGGAGAATGTGTTTACAGCGTCTAATCACAAAATGAA
65 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * * * * * * * * *
2123842 TAAACATCATTTCTAGAATCCATGTTTGTCTCCTTTAAGACATGAACTTAGACTTTATAGAAATT
130 TGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATT
* * * *
2123907 GGTGGGGAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATTCGAATGAGAAGACTA
195 GGT-GGGAAAAAACCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTA
* * * * *
2123972 TGTTTATGGTGCCTAACCCTGAAAAGAATGGGGATTAGCATAAGTATTCATGTTTGTCGTATTTG
259 TGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTA
* * *
2124037 AGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGATTTTCTTGCGACACCAAAGCAA
324 AGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAT
* ** * ** *
2124102 CAATGTCATGTATCTTGTTGAAGGGAATGTGCTTTT-GCTTCCTAGGCCAGAAAAGAATGGAGAC
389 CAATGTCATGTATCCTAATGAAGGGAATGTG-TTTTGGCTTCCCAATCTAGAAAAGAATGGAGAC
* *
2124166 TATTATGAGAAA-CAATGTTTGT
453 TATTATGAGAAATCGATGCTTGT
* *
2124188 CTTATTTAAGGGATGAACTTCGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAA-
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG-AAAGATTTTCATGCAAAAG
* *
2124252 AAAAGTCACCAATTTCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
65 AAAA-TCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
* * * * * * * *
2124317 ATGATGA-CATT-TTCAGAATCTAGGTTTATCTCATTTGCGGCAGGAACTTAGACTTTACCAAAA
129 ATGAAGATCATTACT-AGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAA
* * * * * * *
2124380 TTGGCGAGAAGAAAGCCTTTCTTGC-AAAACATAAGCATCGATATCATGTATCCTAATAAGAAGA
193 TTGGTGGGAA-AAAACCTTTCTTGCGAAACCA-AAGCATCAATATGATGTATCCTAATGAGAAGA
* * * *
2124444 CTATGTTTATGGTGCCTAATCCTAAAAAGAATAGGGATTAGTATCACTATTCATGTTTGTCTTAT
256 CTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTAT
** * * * * * *
2124509 TTAACTGTCAAACTTTGATTC-ATGCCAAAACGGTGGAAA-AAAA-CTGTTCATGCAACACCAAA
321 TTAAGAGACAAACTTTGATTCTAT-CAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAA
* * * *
2124571 GTATCAATGTCATGTATCCTAACG-AGCGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATTG
385 GCATCAATGTCATGTATCCTAATGAAG-GGAATGTGTTTTGGCTTCCCAATCTAGAAAAGAATGG
* * * * * *
2124635 AAAGTGTTGTGAG-AATCAAT-CTTGC
449 AGACTATTATGAGAAATCGATGCTTGT
* * *
2124660 CTTATTTAAAGGATGAACTTTGATTTTAAGGAAAGTAGGGCAAAGAAAAGATTTCCATGCAAAAG
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG-AAAGATTTTCATGCAAAAG
* * * * * * *
2124725 AAAATCATCAATATCGTTTATCCTACTGAGGAGAATATGTTTATCGTGCCTAATCACGACATGAT
65 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* *
2124790 TGAAGATCATTACTAGAAT--ATGTTTGTCTCATTTGAGACATGAACTTAGACTTTACAAAAATT
130 TGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATT
* * *
2124853 GGTGGGATAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCCTAATGACAAGACTA
195 GGTGGGA-AAAAACCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTA
* * * * ** * * * *
2124918 TATTTATGGTGCCAAATCCAAAAAATAACAGGGATTAGCATGAGTGTTCACGTTTGTCGAATTTA
259 TGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTA
* ** * **
2124983 AGAGACAAACTTCGATTCTATCAAAAAATGGTGGAAAGAAAATATTTTCTTGTGACACCGTAGCA
324 AGAGACAAACTTTGATTCTATC-AAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
* *
2125048 TCAATGTCATGTATCC-AGATGAAGGGAATGTGCTTTT-TCTTCCCAGTCTAGAAAAGAATGGAG
388 TCAATGTCATGTATCCTA-ATGAAGGGAATGTG-TTTTGGCTTCCCAATCTAGAAAAGAATGGAG
* *
2125111 ACTATTACGAGAAA-CGATGATTGT
451 ACTATTATGAGAAATCGATGCTTGT
* * *
2125135 CTTATTTAAGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTTC-TCCGAAA
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG-AAAGA-TTTTCATGCAAAA
* * * * *
2125199 GAAAATCATCAATTTCGTTTATCCTAGTGAAGAGAATGTGTTTATAGTGCCTAATCACAAAATCA
64 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
* * *
2125264 ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT-ATGGCACAAACTTAGACTTTTCAAAAA
129 ATGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGA-GGCACGAACTTAGACTTTACAAAAA
* * * * *
2125328 TTTGTGGGAAAAAAGCCTTTCTTGTGAAACCAAAGCATTAATATGGTGCATCCTAATGAGAAGAC
193 TTGGTGGGAAAAAA-CCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGAC
* * * * *
2125393 AATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATAAGTATTCATGTTAGTCGTATT
257 TATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATT
* * * *
2125458 TAAGAGACAAACTTTAATTCTATCAAAAACGGTGGAAA-AAAAGCTTTTCGTGTGACACCAAAGC
322 TAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC
* * ** * *
2125522 ATCGATGCCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCATAATCTTGAAAAGAGTGGAGA
387 ATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTAGAAAAGAATGGAGA
* * * * *
2125587 TTGTTACGAG-AATCGATACATGT
452 CTATTATGAGAAATCGATGCTTGT
* * * * *
2125610 CCTATTT-AGAGGATGAACTTTGATTTTAAAGAAAATAGGGTAAAGGAAAGATTTTCATACCAAA
1 CTTATTTAAG-GGATGAACTTTGATTTTAAGGAAAATAGGGCAAA-GAAAGATTTTCATGCAAAA
* * * * * ***
2125674 GAAAATCATCAATGTCATTTATCTTAATGAGAAGAATGTGTTTATAGTGCTTAATTACAGCTTGA
64 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
* * * ** *
2125739 ATGAAGATCATTACCAAAAT-ACATGTTTGTCTCATTAGAGGCGTGAACTTAGACTATACAAAAA
129 ATGAAGATCATTACTAGAATCA-ATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAA
* * * *
2125803 TTGGTGAGAAAAATGCCTTTTTTGTGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGAC
193 TTGGTGGGAAAAA-ACCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGAC
* * * * * * *
2125868 TACGTTTATTGTGCCTACTCCTAGAAAGAATGGGGATTAGCATGAGTATTCATGTTT-ACTGAAT
257 TATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTC-GTAT
* *** ** *
2125932 TTAAGAGACAAACTTTGATTCTATAAAAAACAATGGAAAGAAAATATTTTCTTGCGACACCGAAG
321 TTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAG
** * * * ** * *
2125997 CATCAATGTCACATATCCTGATGAAGAGAATGCGTTTTTTCTTCCTAATC-CGAAAAAGAATGGA
386 CATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTAG-AAAAGAATGGA
* * *
2126061 GATTATTGTGAGAAAT-GATGCATGT
450 GACTATTATGAGAAATCGATGCTTGT
** * *
2126086 CTTATTTGTGGGATGAACTTCGATTTTAAGGAGAAT-------AG---G--------GCAAAAGA
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAGATTTTCATGCAAAAGA
* * *
2126133 AAATCATCAATTTCATTTATCCTAATGAGGAAAATGTGTTTACAGTGCCTAATCACAAAATGAA-
66 AAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
* * * * * * *
2126197 AAAGATCATTACTAGAATCCATGTTCGTCTCCTTCGAGACACGAACTTAGGCTTTACAAAAATTG
131 GAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTG
* * * * * * **
2126262 GTAGGAAGAAAGCTTTTCTAGCAAAACCAAAGCATCAGTACCATGTATCCTAATGAGAAGACTAT
196 GTGGGAA-AAAACCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTAT
*** * * * * *
2126327 GTTTATGGTTTTTAATCCTGAAAAGAATGGGAATTAGTATGACTATTCATGTTTGTCCTATTTTA
260 GTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAA
* * * * *
2126392 GTGTCAAACTTTTGATTCTAAGC-AAAACGGTGGAAAAAAAAGCTTTTCTTGCGACACCAAAGCA
325 GAGACAAAC-TTTGATTCT-ATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
* * * *
2126456 TCAATGTCATGTATCCTAATG-AGCAGAATGTGTTTAGGCTTCCCAATCTTGAAAAAAATGGAGA
388 TCAATGTCATGTATCCTAATGAAG-GGAATGTGTTTTGGCTTCCCAATCTAGAAAAGAATGGAGA
* * *
2126520 GTGTTACTG-G-AATCGATACTTGT
452 CTATTA-TGAGAAATCGATGCTTGT
* * * *
2126543 CTTATTTAGGGGATGAACTTTGATTTTAAGGAAAGTAAGGCAAAAGAAAGATTTCCATGCAAAAG
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGC-AAAGAAAGATTTTCATGCAAAAG
* *
2126608 AAAATCAT-AATATCATTTATCCTAATGAGGAGAATGTTTTTATAGTGCCTAATCACAACATGAA
65 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * * * **
2126672 AGAAGATCATTACTAGAATCAAGGTTTGTCTCATTTGAGACACAAAGATAGACTTTACAAAAATT
130 TGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATT
* * * *
2126737 GGTGGGAAAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATGTTGTAT-CTAATAAAAAGACTA
195 GGTGGGAAAAAA-CCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTA
* * * * *
2126801 TATTTATGGTGCCTAAT-CTGGAAAAGAATGGGGATTAGCATGAGTATTCGTGTTTGTCGAATTT
259 TGTTTATGGTGCCTAATCCT-AAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTT
* * * * *
2126865 AAGAGACAAACTTTGATTCTATCAAAGACGGTGGAAAGAAAGGCTTTTGTTGCGACACCAAAGTA
323 AAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
* * * * * *
2126930 TTAATGTCACGTATCCTAAT-AAGAGTAATGTGTTTTGGCTTCCCAATCTTGAAAACAAGGGAGA
388 TCAATGTCATGTATCCTAATGAAG-GGAATGTGTTTTGGCTTCCCAATCTAGAAAAGAATGGAGA
* ** * *
2126994 CTGTTGCGA-AAATTGATGCATGT
452 CTATTATGAGAAATCGATGCTTGT
* * * * * *
2127017 CTTATTTAGGGGATGAAATTTGATTTTAAGGAAAGTAGGGCAAAAAAAAGGTTTCCATGACAAAA
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGC-AAAGAAAGATTTTCATG-CAAAA
* * *
2127082 GAAAATCATCAATATCATTTATCCTAATTAGAAAAATGTGTTTATAGTGCCTAATCACAAAATGA
64 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
* * * * * *
2127147 ATGAAGATCATTACTAGAATCAATGTTTATCTCGTTTGAGGCATGAACTTAGACTTTTCCAAGAT
129 ATGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAT
** * * *
2127212 TGGTAAGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCGATATCG-TGTATCCTAATGAGAAGAC
194 TGGTGGGAA-AAAACCTTTCTTGCGAAACCAAAGCATCAATAT-GATGTATCCTAATGAGAAGAC
* * *
2127276 TATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATT
257 TATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATT
* *
2127341 TAAGAG-GAAACTTTGATTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC
322 TAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC
* * * * * * * * *
2127405 ATCAGTATCATGCATCCTAATGAGGGGGATGTGTTTTGGCTTCCCAATCTTGAAAATAATAGAAA
387 ATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTAGAAAAGAATGGAGA
* * **
2127470 CTGTTATG-GGAATCGATGCTCAT
452 CTATTATGAGAAATCGATGCTTGT
** * * * *
2127493 CTTATTTAAATGAT-AAGCTTTGATTTTAAGAAAAATAGTGCAAAGAAAAGGTTTCCATGCAAAA
1 CTTATTTAAGGGATGAA-CTTTGATTTTAAGGAAAATAGGGCAAAG-AAAGATTTTCATGCAAAA
* * * * * *
2127557 GAAAGTCATCTATATCATTTATCCTAATGAGAAGAATGTATTTATAGTGCCTAATCAGAACATGA
64 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
* * * *
2127622 ATGAAGATTATTGCTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAAT
129 ATGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAT
* * * *
2127687 TGGTGGGAAAAAAGCTTTTCTTGCGAAACCTAAGCATCAATATGATGTATCTTAATAAGAAGACT
194 TGGTGGGAAAAAA-CCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACT
* * * *
2127752 ATGTTTATGGTGCCTAATCCTCAAAAGAATGGGCATTAGTA--A-T-TT-TTGTTTGTCATATTT
258 ATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTT
* * **
2127812 AATAGTA-AAACTTTGATTCTATCAAAAATGATGGAAAGAAAAGCTTTTCTCAC-AGCACCAAAG
323 AAGAG-ACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGA-CACCAAAG
* * ** * * * *
2127875 CATCAATATCATGTATCCTAATGAGGGGAATGCATTTCGGCTTCCCCATCTTGAAAACAATGGAG
386 CATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTAGAAAAGAATGGAG
* * * * * **
2127940 ATTGTTACGAG-AACCGATGGTAAT
451 ACTATTATGAGAAATCGATGCTTGT
* * *
2127964 CTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGAGCAAA-AAATATTTCTACA--CAAAA
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAGATTT-T-CATGCAAAA
* * * * *
2128026 GAAAATAATTAATATCATTTATCCGAATGGGGAGAATTTGTTTATAGTGCCTAATCACAAAATGA
64 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
* * *
2128091 ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTAGAGTCACGAACTTAGACTTTACAAAAAT
129 ATGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAT
* * * * *
2128156 TGATGGGAAAAAAGCCTTTCTTGTGAAACCAAAGCGTCAATATGATATATCCTAATAAGAAGACT
194 TGGTGGGAAAAAA-CCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACT
* * * * *
2128221 ATGTTTATGGTGCCTAATCCTAGAAAA-AATGGGGATTAATATAAGTATTCATGTTTATCATGTT
258 ATGTTTATGGTGCCTAATCCTA-AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATT
* * * * **
2128285 TAAAGAGACAAATTTTGATTCTATCAAAAATGGTAGAAAGAAATGATTTTCTTGCGACACTGAAG
322 T-AAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAG
* * * *
2128350 CATCAATGTCATGTATCCTGATGAAGGGAATGTGTTTTTGCTTCCCAATCCAGAAAAGTATGGAG
386 CATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTAGAAAAGAATGGAG
*
2128415 ACTATTACGAGAAAT-GATGCTTGT
451 ACTATTATGAGAAATCGATGCTTGT
* * * *
2128439 CTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAAGGCAAAGAAAAGATTTCCATGCAATAG
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG-AAAGATTTTCATGCAAAAG
* * * * * *
2128504 TTAAATCATCAATTTTATTTATCGTAATGAGGAGAATGTGTTTACT-GTGGCTAATCACAAAAAG
65 -AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA-TAGTGCCTAATCACAAAATG
** * * * *** * ** * *
2128568 GTTGAAAATCATAACTAGAATCCATGTTCAACTCCTTCAAGGTA-GAAACATAGACTTTACAAAA
128 AATGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACG-AACTTAGACTTTACAAAA
*** * * * *
2128632 ATTCACGAGAAAAAAGCTTTTCTTGCGAAACCAAAGCATCAAT-TCCATGTATCCTAATGACAAG
192 ATTGGTGGGAAAAAA-CCTTTCTTGCGAAACCAAAGCATCAATAT-GATGTATCCTAATGAGAAG
* * * * * *
2128696 ACTGTGTTTATGGTGCTTAATCCTGAAAAA-AATGGGGAATAGCT-TGACTATTTATGTTTGTCT
255 ACTATGTTTATGGTGCCTAATCCT-AAAAAGAATGGGGATTAG-TATGAGTATTCATGTTTGTCG
* * * * * ***
2128759 TATTTAAGTGTCAAACTTTGGTTCTAACCAAAACAATGGAACA-AAAA-CTTTT-TATGCGACAC
318 TATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAA-AGAAAAGCTTTTCT-TGCGACAC
* * * * * * *
2128821 CAAAGCATCAATGTCATGAAGCCTAAT-AACCGGAATTTATTTTGGCTTCCCAATCTCGAAAAAA
381 CAAAGCATCAATGTCATGTATCCTAATGAA-GGGAATGTGTTTTGGCTTCCCAATCTAGAAAAGA
* * * * * * *
2128885 ATAGAAAGTGTTACGAG-AATCAATACTTGT
445 ATGGAGACTATTATGAGAAATCGATGCTTGT
* *
2128915 CTTATTTAAGGGATGAACTTTAATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGTAAAAG
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG-AAAGATTTTCATGCAAAAG
* * * * * *
2128980 AAAATCATCAATATCATTTATCCTAATGAGAAGAATATATTTATAGTTCCTAATCACAACATGAT
65 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * * * *
2129045 TGAGGATCATTACTAGAATCTATGTTCGTCTCATTTGAGACACGAACTTGGACTTTACAAAAATT
130 TGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATT
* * *
2129110 GCG-GGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATTATGTATCCGAATGAGAAGACT
195 G-GTGGGAAAAAA-CCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACT
** * ** *
2129174 ATGTTTATGGTGCCTAATCC-AGAAAAGAACAGGGATTAGCATGAGTATTCACATTTGTCGAATT
258 ATGTTTATGGTGCCTAATCCTA-AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATT
* * * * * * * *
2129238 TAAGAGACAAACTTTAATTCTATAAAAAACGGTGGAAAAAAAAAGATTTTTTTGCGACCCCGAAG
322 TAAGAGACAAACTTTGATTCTATCAAAAATGGTGG-AAAGAAAAGCTTTTCTTGCGACACCAAAG
* * * * * *
2129303 CAACAATGTCATATATCTTGATGAAAGGAATGTGTTTTAGCTTCCCAATCTAGAAAAGAATGGAG
386 CATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTAGAAAAGAATGGAG
2129368 ACTATTATGAGAAA-CGAT-CTTGT
451 ACTATTATGAGAAATCGATGCTTGT
* *
2129391 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATCGGGCAAA-AAAGATTTCCATGCAAAAGA
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAGATTTTCATGCAAAAGA
* * * * **
2129455 AAATCATTATTATCATTTATCCTAATGAGGAGAATTTGATTATAGTGCCTAATCACAAAATGGGT
66 AAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
* * ** * *
2129520 GAAGATCATTACTAGAATCCATGTTTGTCTCATTAGACACACAAACTTAGACTTTACAAAAATTA
131 GAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTG
* *
2129585 GTGGGAAAAAAACCTTTCTTACGAAACCAAAGCATCAATATGATGCATCCTAATGAGAAGAC-AT
196 GTGGG-AAAAAACCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTAT
* *
2129649 GTTCATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATAAGTATTCATGTTTGTCGTATTTAA
260 GTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAA
* * * ** * * *
2129714 GAGGCAAACATTAATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGTGACACCGAAGCATT
325 GAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
* * * * * * * *
2129779 AAGGTCTTGTATCTTAGTGAAGGGAATATGTTTTGGCTTCCGAATCTAGAAAAGAATGGAGGCTG
390 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTAGAAAAGAATGGAGACTA
2129844 TTATGAGAAA-CGATGCTTGT
455 TTATGAGAAATCGATGCTTGT
* * * *
2129864 CTTATTTAAGGGATAAACTTTGATTTTAAGGAAAACAGGGAAAAGGAA-ATATTTCTATGCAAAA
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAGAT-TTTC-ATGCAAAA
* * * * * * * * *
2129928 GAAAATTATCAGTATCATTTATCCGAATTAGGAGAATGCGTTTAGAGT-CTGTAACCGCAAAATG
64 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC-CTAATCACAAAATG
* *
2129992 AATGAAGATCATTACTAGAATCAATGTCTGTCTCATTTGAGGCACGAACTTAGACTTTACCAAAA
128 AATGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAA
* * * * *
2130057 TTGGTTGGAAGAAAGCCTTTTTTGCGAAACCAAAGCATCGATATCG-TGTATCCTAATGAGAAAA
193 TTGGTGGGAA-AAAACCTTTCTTGCGAAACCAAAGCATCAATAT-GATGTATCCTAATGAGAAGA
** * * * *
2130121 CTATGTTTATGGTGCCTAATCCTTTAAAGAATGGGGATTAGTATGACTATCCTTGTTTTTCGTAT
256 CTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTAT
* * * **
2130186 TTGAGAGACAAACTTTGATTTTATCAAAAATAGTGGAAATG-AAAGCTTTTCTTGCGACACTGAA
321 TTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAA-GAAAAGCTTTTCTTGCGACACCAAA
* ** * * *
2130250 GCATCAATGTCTTGTATCCTGGTGAAGGGAATGTGTTTTGGCTTCCCAGTCCAAAAAAGAATGGA
385 GCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTAGAAAAGAATGGA
*
2130315 AACTATTATGAGAAAT-GATGCTTGT
450 GACTATTATGAGAAATCGATGCTTGT
* * *
2130340 ATTATTTAAGGGATGAACTTTGACTTTAAGGAAAATAGGGCAAAGGAAAGA-TTCCATGCAAAAG
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAA-GAAAGATTTTCATGCAAAAG
* * * * *
2130404 AAAATCATCAATATCATTTATTCTAATGAGGAGAATGCGTTTAGAGTGCGTAACCACAAAATGAA
65 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * * * *
2130469 TGAAAATCATGACTAGAATCAATGTCTGTCTCATTTGAGGCACGAACATAGACTTTACCAAAATT
130 TGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATT
* ** * * * * *
2130534 CGCAGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCGATATCATGTATCATAATGAGAAGACTA
195 GGTGGGAA-AAAACCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTA
* * * * * *
2130599 TGTTTATGGTGCCTAATCCTTAAAGGAATCGGGATTAGTATGACTTTTCTTGTTTGTCGTATTTA
259 TGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTA
* * *
2130664 AGAGACAAACTTTGATTCTATCAAAAATGGTGCAAAGAAAACCTTTTGTTGCGACACCAAAGCAT
324 AGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAT
*
2130729 CAATGTCATGTATCCTAATG-AGAGGAATGTGTTTTGGCTTCCCAATCTAGAGAAGAATGG-GAC
389 CAATGTCATGTATCCTAATGAAG-GGAATGTGTTTTGGCTTCCCAATCTAGAAAAGAATGGAGAC
*** *
2130792 TGCAATGA-TAATCGATGCTTGT
453 TATTATGAGAAATCGATGCTTGT
* * * * *
2130814 CTTATTTAAGGGATGAGCTTTGATTTTAAGAAAAATAGGGCAAAGAAAACATTTTTATGCAAAGG
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG-AAAGATTTTCATGCAAAAG
* * ** *
2130879 AAAATCATCAATATCATTTATCCTAATGACGAGAATGTGTTTATAGTGCCTTATCACAACTTAAA
65 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * * * * * *
2130944 TAAAGACCATTACTAGAATCTATGTTTCTCTCATTTGATGCTCGAGCTTAGACTTTACAAAAATT
130 TGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATT
* * * *
2131009 GGTGGGAAAAAAGCCTTCCTTACGAGACCAAAGCATCAATATGATGTATCCTAATGAGAAGTCTA
195 GGTGGGAAAAAA-CCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTA
* * * * * * *
2131074 TGCTTATGGTGCCTAATCTTGAAAGGAACGGTGATTAGTATGAGTATTCATGTTTGTCGTACTTA
259 TGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTA
* * * * **
2131139 A-ATGATAAACTTTGATTCTATCAAAAATGATGGAAAGGAATGCTTTTCTTATGACACCAAAGCA
324 AGA-GACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
* **
2131203 TCAACGTCATGTATCCTAATG-AGGGAATGTGTTTTGGCTTCCCAA-C--GTTTAAGAATGGAGA
388 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTAG-AAAAGAATGGAGA
* * *
2131264 CTATTACGA-TAATCGATGCATGT
452 CTATTATGAGAAATCGATGCTTGT
* * * * * *
2131287 CTTATTTAGGGGATGAACTTTGATTCTATGGAAAACAGGGCAAAGAAAAGATTTTCCTACAAAAG
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG-AAAGATTTTCATGCAAAAG
* *
2131352 AAAGTCATCAATATCATTTTTCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
65 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * * * ** * *
2131417 TAAAAAACATTACTA-AAGTCAATGTTTGTCGCATTTGAGGCGTGAACCTAGACATTACAAAAAT
130 TGAAGATCATTACTAGAA-TCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAT
*
2131481 TGG-GGAGAAGAAAACCTTTCTTACGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGAC
194 TGGTGG-GAA-AAAACCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGAC
* * * * *
2131545 TATGTTTATGGTGCCTAATCTTGAAAGGAACGGTGATTAGTATGAGTATTCATGTTTGTCGTATT
257 TATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATT
* * * * * **
2131610 TAAAAGATAAACTTTGATTCGATCAAAAATGATGGAAAGGAAAGCTTTTCTTATGACACCAAAGC
322 TAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC
* * * * ** *
2131675 ATCAACGTCATATATCCTAA-CAAGGGAATGTGTTTTGGCTTCCTAA-C--GTTTAAGAATTGAG
387 ATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTAG-AAAAGAATGGAG
* *
2131736 ACTATTATGA-TAATCGATGCATGT
451 ACTATTATGAGAAATCGATGCTTGT
* * * * *
2131760 CTTATTTAGGGGAAGAACTTTGATTCTAAGGAAAACAGGGCAAAGAAAAGATTTTCCTGCAAAAG
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG-AAAGATTTTCATGCAAAAG
* * *
2131825 AAAGTCATCAATATCATTTTTCCTAATGAAGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
65 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * * * * ** * *
2131890 TAAAAAACATAACTA-AAGTCAATGTTTGTCGCATTTGAGGCGTGAACCTAGACATTACAAAAAT
130 TGAAGATCATTACTAGAA-TCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAT
*
2131954 TGG-GGAGAAGAAAACCTTTCTTACGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGAC
194 TGGTGG-GAA-AAAACCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGAC
* * * * ** *
2132018 TATGTTTATGGTGCATAATCTTGAAAGGAACAGTGATTAGTATGAGTATTCATGTTTGTCGTATT
257 TATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATT
* * * * **
2132083 TAAAAGATAAACTTTGATTCGATCAAAAATGATGGAAAGAAAAGCTTTTCTTATGACACCAAAGC
322 TAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC
* * * * ** *
2132148 ATCAACGTCATATATCCTAACG-AGGGAATGTGTTTTGGCTTCCTAA-C--GTTTAAGAATTGAG
387 ATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTAG-AAAAGAATGGAG
* *
2132209 ACTATTATGA-TAATCGATGCATGT
451 ACTATTATGAGAAATCGATGCTTGT
* * * * * *
2132233 CTTATTTAGGGGAAGAACTTTGATTCTAAGGAAAACAGGGCAAAGAAAAGATTTTCCTCCAAAAG
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG-AAAGATTTTCATGCAAAAG
* * *
2132298 AAAGTCATCAATATCATTTTTCCTAATGAAGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
65 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * * * * ** * *
2132363 TAAAAAACATAACTA-AAGTCAATGTTTGTCGCATTTGAGGCGTGAACCTAGACATTACAAAAAT
130 TGAAGATCATTACTAGAA-TCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAT
*
2132427 TGG-GGAGAAGAAAACCTTTCTTACGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGAC
194 TGGTGG-GAA-AAAACCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGAC
* * * * ** *
2132491 TATGTTTATGGTGCATAATCTTGAAAGGAACAGTGATTAGTATGAGTATTCATGTTTGTCGTATT
257 TATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATT
* * * * **
2132556 TAAAAGATAAACTTTGATTCGATCAAAAATGATGGAAAGAAAAGCTTTTCTTATGACACCAAAGC
322 TAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC
* * * * *** **
2132621 ATCAACGTCATATATCCTAACG-AGGGAATGTGTTTTGGCTTCCTAA-CT-TTTAAGAATTAAGA
387 ATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTAGAAAAGAATGGAGA
* *
2132683 CTATTATGA-TAATCGATGCATGT
452 CTATTATGAGAAATCGATGCTTGT
* * * * *
2132706 CTTATTTAGGGGAAGAACTTTGATTCTAAGGAAAACAGGGCAAAGAAAAGATTTTCCTGCAAAAG
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG-AAAGATTTTCATGCAAAAG
* * *
2132771 AAAGTCATCAATATCATTTTTCCTAATGAAGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
65 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * * ** ** * *
2132836 TAAAAAACATTACTA-AAGTCAATGTTTGTGGCATTTGAGGCGTGAACCTAGACATTACAAAAAT
130 TGAAGATCATTACTAGAA-TCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAT
*
2132900 TGG-GGAGAAGAAAACCTTTCTTACGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGAC
194 TGGTGG-GAA-AAAACCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGAC
* ** * * * *
2132964 TATGTTTATGGTGCCTAATCTTGGAAGGAACGGTGATTAGTATAAGTATTCATGTTTGTCGTATT
257 TATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATT
* * * ** * **
2133029 TAAAAGATAAACTTTGATTCGATCAAAAATAATGGAAAGGAAAGCTTTTCTTATGACACCAAAGC
322 TAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC
* * * ** *
2133094 ATCAACGTCATATATCCTAATG-AGGGAATGTGTTTTGGCTTCCTAA-C--GTTTAAGAATTGAG
387 ATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTAG-AAAAGAATGGAG
* *
2133155 ACTATTATGA-TAATCGATGCATGT
451 ACTATTATGAGAAATCGATGCTTGT
* * * * *
2133179 CTTATTTAGGGGAAGAACTTTGATTCTAAGGAAAACAGGGCAAAGAAAAGATTTTCCTGCAAAAG
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG-AAAGATTTTCATGCAAAAG
* * * *
2133244 AAAGTCATCAATATCATTTTTCCTAATGAAGAGAATGTGTTTATAGTGCCTAAACACAAAATGAA
65 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * * * * *
2133309 TAAAGAACATTACTAGAATCAATGTTTGTCGCATTTGAGGCATGAACCTAGACATTACAAAAATT
130 TGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATT
* * *
2133374 GGGGGGAAAAAAACCTTTCTTACGAAACCAAAGCATCAATATGATGTATCCTAATGAGAATACTA
195 GGTGGG-AAAAAACCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTA
* * * * * *
2133439 TGTTTATGGTGCCTAATCTTGAAAGGAACGGTGATTAGTATAAGTATTCATGTTTGTCGTATTTA
259 TGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTA
* * * * **
2133504 AAAGATAAACTTTGATTCTATCAAAAATGATGGAAAGGAAAGCTTTTCTTATGACACCAAAGCAT
324 AGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAT
* * * * ** *
2133569 TAACGTCATGTATCCTAACG-AGGGAATGTGTTTTGGCTTCCTAA-C--GTTTAAGAATCGAGAC
389 CAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTAG-AAAAGAATGGAGAC
* * * *
2133630 TATTACGA-TAATTGATGCATGT
453 TATTATGAGAAATCGATGCTTGT
* * * *
2133652 CTTATTTAGGGGATGAACTTTGATTCTAAGGAAAACAGGGCAAAGAAAAGATTTTCCTGCAAAAG
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG-AAAGATTTTCATGCAAAAG
* * * *
2133717 AAAGTCATCAATATCATTT-TCCTAATGAGGATAATGTGTTTATAGTGCCTAATCACAATATAAA
65 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * * * *
2133781 TAAAGAAT-ATTACTAGAATCAATGTTTGTCGCATTTGAGGCATGAACCTAGACATTACAAAAAT
130 TGAAG-ATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAT
* * *
2133845 TGGGGGGAAGAAAACCTTTCTTACAAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACT
194 TGGTGGGAA-AAAACCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACT
* ** *
2133910 ATGTTTATGGTGCCTAACCCTAAAAAGAACT-GGGATTAACATGAGTATTCATGTTTGTCGAATT
258 ATGTTTATGGTGCCTAATCCTAAAAAGAA-TGGGGATTAGTATGAGTATTCATGTTTGTCGTATT
* * * * *
2133974 TAGGAGACAAACTTTGAATCTATCAAAAATGGTAGAAAGAAAAGACTTTT-TTACGACACCAATG
322 TAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAG-CTTTTCTTGCGACACCAAAG
* ** * * * * *
2134038 CATCAACGTCACATATCTTGATGAA-GGAAAGTGTTTTGGCTTCCCAATCTAGAATAGAATGAAG
386 CATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTAGAAAAGAATGGAG
*
2134102 AC-AGTTATGTGAAA-CGATGCTTGT
451 ACTA-TTATGAGAAATCGATGCTTGT
* ** *
2134126 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAGGGAAAGACGTCCATGCAAAAG
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAA-AGAAAGATTTTCATGCAAAAG
* ** *
2134191 AAAATCTTCAATATCATTTATCCTAATGAGGAGAATGTGTTTGGAGTGCGTAATC-CTAAAATGA
65 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC-AAAATGA
* * * * ** * * * * * * ** * *
2134255 ATTATGATTAGTA-T-GACTATTTATGTCATGTATCCTAATGA--AATGAA-TGT-GTTTTTGCT
129 ATGAAGATCATTACTAGA--ATCAATGT-TTGTCTCAT-TTGAGGCACGAACT-TAGACTTTACA
**** ** * ** * * * * * *
2134314 TCCCTTTCTGGAAAAGAATGGAGATTGT-TATG-AAAATCGAAGC-T---TCT-CT-TAT-TTAA
189 AAAATTGGTGGGAAA-AA---ACCTT-TCT-TGCGAAACCAAAGCATCAATATGATGTATCCTAA
* * **** *** **** * *
2134370 GTGATG-A-ACTCTGATTTCAAGGAAAATAGGGC-AAAGAA-AA-GATTTTTA-TATAAAAGAAA
248 -TGA-GAAGACTATG-TTT-ATGGTGCCTAATCCTAAA-AAGAATGGGGATTAGTAT--GAG-TA
* ** * * * * * * * * * ****
2134429 ATCATCATTATCATTTATCCTAAAAAGGA-GAA-TGTGTTTAC-AGCACATAAT-CACAAAATGA
305 TTCATGTTTGTC--GTAT--TTAAGA-GACAAACTTTGATT-CTATCA-AAAATGGTGGAAA-GA
* * * * * * * * ** *
2134490 ATAAAC--ATCATT-----TCTAAA--ATCAATGT-TTGTCTCGT-TTG-A--GACATGTACTTA
362 A-AAGCTTTTC-TTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGA-ATGTGTTTT
* * * ** * **** *** * * * * * * *
2134541 GACTTTACAAAAATTGGTGGGAAAAAAGCCT-TTCGTGCGAAACCAAAGCATCAATAT
424 GGC-TTCCCAATCTAGAAAAGAATGGAGACTATT-ATGAGAAATCGATGC-T---TGT
* * * * * ** * * *
2134598 GATGCATCCTAATGAGAAGACT-AAGTTT-ATGGTGCCTAATCCTAAAAGGAACGGTG-ATTAGT
1 -CT-TAT-TTAA-G-G--GA-TGAACTTTGAT--T--TTAA--GGAAAA--TA-GG-GCA-AAGA
* * *** * * * ** **
2134660 ATGAGTATTCATGTTTGTCATATTTAAAA-GA-CAAGCTTTGATTCTATCAAAAACAATGGAAAG
47 AAGA-TTTTCA----TG-CA-AAAGAAAATCATCAA--TATCATT-TATC-CTAATGA-GG--AG
* * * * * * ** * * *
2134723 AAAAGCTTTTCTTATGACT-CCAAAGCATC-AATTTTATG--TATC-CTAATGAGGGAAT--ATG
98 -AATG--TGT-TTAT-AGTGCCTAATCA-CAAAATGAATGAAGATCATTACT-A--GAATCAATG
* * * * * * ***
2134781 TTTTGGCTTCCTAATGTTTAAGAATCAAGACTATTATGA-TAATCGATGCATTTTTATT--TAGG
154 -TTT-G--T-CTCAT-TTGAGGCA-CGA-AC--TTA-GACT--T---TACA--AAAATTGGT-GG
* ** * *
2134843 GGATGAA-CTTTATTGGCAAGAAGAAAGCCTTTCTTGCAAATCCAAACCATCAATATGATGTATC
200 GAAAAAACCTTTCTT------------G-----C--G-AAA-CCAAAGCATCAATATGATGTATC
* * * ** * *
2134907 CTAAAGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAACGATGATTAGCATGAGCATTCA
244 CTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCA
* * * * * *
2134972 TGTTTGTCGAATTTAGGAGACAAACTTTAATTCTATCAAAAAAT-GTGGAAGGAAAAGATTTTTT
309 TGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATC-AAAAATGGTGGAAAGAAAAGCTTTTCT
** * * ** * * * * *
2135036 TATGACATCAAAGCATCAACGTCACATATCTTGATGAA-GGAATGTGTTTTTGCTTTCAAATCTA
373 TGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTA
* *
2135100 GAAAAGAATGGAGATTGTTATGAGAAA-CGATGCTTGT
438 GAAAAGAATGGAGACTATTATGAGAAATCGATGCTTGT
* * * * *
2135137 CTTATTTAAGGGATGAACTTTGGTTTTAAAGAAAATAGGGCAAAGGAAAGACCTTCCACGCAAAA
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAA-GAAAGA-TTTTCATGC--AA
* * * *
2135202 AAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTAGAGTGCGTAATCATAAAAT
62 AAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAT
* * * * *
2135267 GAATGAAGATCATTACTAGAATGATTGTTTGTTTCATTTGAAGCACGAACTTAGACTTTACCAAA
127 GAATGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAA
* * * * *
2135332 ATT-GTCAGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCGATATCG-TGTATCCGAATAAGAA
192 ATTGGT-GGGAA-AAAACCTTTCTTGCGAAACCAAAGCATCAATAT-GATGTATCCTAATGAGAA
* * * *
2135395 GACTATGTTTATGGTGCCTAATCCT-TAAAGAATGGGAATTAGTATGACTATTCTTGTTTGTCGT
254 GACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGT
* * * *
2135459 ATTTAAGAGACAGACTTTGATTCTATCTAAAACGGTGGAAAGAAAAGCTTTTAC-TGTGACACCA
319 ATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTT-CTTGCGACACCA
* * * * *
2135523 AAGAATCAGTGTCATGTATCCTAATGAGGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAAAATA
383 AAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTAGAAAAGAAT-
** *
2135588 GG-GACTGCTACGAG-AATCGATGCTTGT
447 GGAGACTATTATGAGAAATCGATGCTTGT
* * * **
2135615 CTTATTTAAGGGATGAACTTTGATTTTGAGCAAAATAGGGCAAAGAAAAGA-TTTCTATACAATG
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG-AAAGATTTTC-ATGCAAAA
** **
2135679 GAAAATCATCAATATCATTTATCCTAATGACAAGAATGTGTTTATAGTGCCTAATCACAACTTGA
64 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
** * * * * * * * *
2135744 AT-AACGGCCATTACTAGAATCCATGTTTCTCCCTTTTGATGCTCGAACATAGACTTTACGAAAA
129 ATGAA-GATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAA
* *
2135808 TTGGTGGGAAAAAAACCTTTCTTGC-ATGACCAAAGCATCAATATGATGCATCCTAATGAG-AGC
193 TTGGTGGG-AAAAAACCTTTCTTGCGA-AACCAAAGCATCAATATGATGTATCCTAATGAGAAG-
* * *
2135871 ACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTAT-AGCTATTCATGTTTGTTGT
255 ACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAG-TATTCATGTTTGTCGT
* * * *
2135935 ATTTAAGAGTCAAACTTTGATTTTATCAGAAACT-GTGGAAAGAAAAGCTTTTCTTGTGACACCA
319 ATTTAAGAGACAAACTTTGATTCTATCA-AAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCA
* * * * **
2135999 AAGCATTAATGTCACGTATCCTAATGAAGGGAATATGTTTTGGCTT-CCAATTGTTTAAAA-AAT
383 AAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAA-TCTAGAAAAGAAT
* * * **
2136062 CGAGACTGTTACGAG-AATCGATGCAAGT
447 GGAGACTATTATGAGAAATCGATGCTTGT
*
2136090 ATTATTT-AGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAG
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG-AAAGATTTTCATGCAAAAG
* ** * * *
2136154 AAAATCATCAATATCATTTTTTATAATGAGGAAAATGTGTTTATAGTGCCTAAACACGAAATGAA
65 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * * * * *
2136219 TGAAGATAATTACTAGAATCCATATTTGTCTCATTTGAGACACGAGCGTAGACTTTACAAAAATT
130 TGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATT
* * * ** * * *
2136284 TGTGGAAAAAAAAAGCCTTTCTTACGAAACCATTGCGTCAATATCG-TGTATCTTAATGAGAAAA
195 GGTGG--GAAAAAA-CCTTTCTTGCGAAACCAAAGCATCAATAT-GATGTATCCTAATGAGAAGA
* * * * * *
2136348 TTAAGTTTATGGCGCCTAATCCTTAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTAT
256 CTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTAT
* * * * * *
2136413 ATAAGAGACAAATTTTGATTCTATCAAAAACGATTGAAA-AAAAGCTTTTCTT--G-CA--AATG
321 TTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAG
* * *
2136472 C--C-ATG-C----ATCTTAATTAAGGGAATATGTTTTTGG-TTCCCAAT-T-GAAAAGAATGGA
386 CATCAATGTCATGTATCCTAATGAAGGGAATGTG-TTTTGGCTTCCCAATCTAGAAAAGAATGGA
* * * *
2136526 GACTGTTATGA-AAATCAATACTTTT
450 GACTATTATGAGAAATCGATGCTTGT
* * * *
2136551 CTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGCAAAAAAGAGAATTTCATGCAAAAA
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAA-AGATTTTCATGCAAAAG
*
2136616 AAAATCATCAATATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
65 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * * **
2136681 TGAAGATCATTACTAGAATCCA------TCTCATTTAAGGCATGAACTTAGACTTTATGAAAATT
130 TGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATT
* * * * *
2136740 GGCGAGAAAAAATCCTTTCTTGCGAAACCAAAGCATTAATATAATGTATCCTATTGAGAAGACTA
195 GGTGGGAAAAAA-CCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTA
* ** * * *
2136805 TGTTTATGGTACCTAATCCTAAAAAGAA-CAGGATTAGTA--AGTGTTCATGTTTGTCATTTTTA
259 TGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTA
* * * *
2136867 AGAGACAAACTTTGATTCTATAAAAAACGGTGGAAAGAAAAGCTTTACTTGCAACACCAAAGCAT
324 AGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAT
* * ** * *
2136932 CAATGTCATGTATCCTAATGAAGGAAATGTGTTTTGGCTTCCCAAACTTCAAAAAAATTGAGACT
389 CAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTAGAAAAGAATGGAGACT
* *
2136997 GTTATGAG-AATCGATGCTTAT
454 ATTATGAGAAATCGATGCTTGT
* * * * * *
2137018 CTTATTTAAGGGACGAACTTTGATTTTAA-GAAAATGGGGCATAGAAAAGATTTTTATGTAAATG
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG-AAAGATTTTCATGCAAAAG
* * * * *
2137082 AAAATTACCAATATCATTTATCCTAATGAGGAGAAAGTGTTTATAGTACCTAATTACAAAAT
65 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAT
2137144 AAATAAGGTG
Statistics
Matches: 19921, Mismatches: 3314, Indels: 1258
0.81 0.14 0.05
Matches are distributed among these distances:
451 50 0.00
452 12 0.00
453 9 0.00
454 71 0.00
455 2 0.00
456 195 0.01
457 203 0.01
458 4 0.00
459 1 0.00
460 7 0.00
461 33 0.00
462 150 0.01
463 10 0.00
464 6 0.00
465 28 0.00
466 92 0.00
467 95 0.00
468 160 0.01
469 410 0.02
470 479 0.02
471 764 0.04
472 1535 0.08
473 3678 0.18
474 2256 0.11
475 3998 0.20
476 3581 0.18
477 1170 0.06
478 494 0.02
479 21 0.00
480 5 0.00
482 4 0.00
484 4 0.00
486 1 0.00
487 8 0.00
488 4 0.00
492 5 0.00
493 2 0.00
494 10 0.00
495 4 0.00
496 6 0.00
497 6 0.00
498 3 0.00
499 8 0.00
500 5 0.00
501 8 0.00
502 6 0.00
503 17 0.00
504 3 0.00
505 9 0.00
506 2 0.00
507 8 0.00
508 4 0.00
509 2 0.00
510 2 0.00
511 20 0.00
512 9 0.00
513 10 0.00
514 8 0.00
515 2 0.00
517 7 0.00
518 6 0.00
519 8 0.00
520 11 0.00
521 2 0.00
522 3 0.00
523 2 0.00
524 11 0.00
525 1 0.00
527 4 0.00
529 3 0.00
531 2 0.00
532 7 0.00
533 4 0.00
534 9 0.00
535 13 0.00
536 16 0.00
537 5 0.00
538 3 0.00
539 21 0.00
540 18 0.00
541 14 0.00
542 10 0.00
543 8 0.00
544 22 0.00
545 10 0.00
546 2 0.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.31
Consensus pattern (475 bp):
CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAGATTTTCATGCAAAAGA
AAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
GAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTG
GTGGGAAAAAACCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATG
TTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAG
AGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCA
ATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTAGAAAAGAATGGAGACTAT
TATGAGAAATCGATGCTTGT
Found at i:2116318 original size:475 final size:476
Alignment explanation
Indices: 2112809--2126135 Score: 14311
Period size: 476 Copynumber: 28.1 Consensus size: 476
2112799 GGAGTCTACA
* * * * * * *
2112809 CTTATTTATGGGATGAACTTCGATTTTAAGGAGAATAGGGCAAAAAAAATATTTCCCTGTAAAAG
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG
* * *
2112874 AAAATCATCAATTTCATTTATCCTAATGAGGAGAATGTGTTTATAATACCTAATCACAAAATGAA
66 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * * * * *
2112939 TGAAGACCATTACTAGAATCGATGTTCGTCTCCTTCGAGACACGAACTTAGACTTTACAAAAATT
131 TGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATT
* * * * * * ** * * *
2113004 GGTAGGAAGAAAGCTTTTCTAGCAAAACCAAAGCATCTATACCATGTGTCATAATAAGAAGACTA
196 GGTGGGAA-AAAACCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTA
* * * *
2113069 TGTTTATGGTTCTTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCCTATTTA
260 TGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTA
* * * * * * * * * *
2113134 AGTGTCAAATTTTGATTGTAACCAAAACGGTGGAAAAAAAAGCTTTTTTTGCAACACCAAAGCAT
325 AGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAT
* * * ** * *
2113199 CAATGTCATGTACCCTAATG-AGCAGAATGTGTTTAGGCTTCCTGATCTTGAAAAGAATGGAGAG
390 CAATGTCATGTATCCTAATGAAG-GGAATGTGTTTTGGCTTCCCAATCTAGAAAAGAATGGAGAC
* *
2113263 TGTTACT-AG-AATCAATGCTTGT
454 TATTA-TGAGAAATCGATGCTTGT
* *
2113285 CTTATTTAGGGGATGAACTTTGATTTTAAGGAAAATAAGGCAGAAG-AAAGATTTCCATGCAAAA
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCA-AAGAAAAGATTTCCATGCAAAA
*
2113349 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAACATGA
65 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
* * ** * * * * *
2113414 AAGAAGATCGTTGTTAGAATCAATGTTTGTTTCATTTAAGACACAAACTTAGATTTTACAAAAAT
130 ATGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAT
* * * * *
2113479 TGGTGGGGAAAAAGCTTTTCTTGTGAAACCAAAGCATTAATATGATGTATCCTAATGAAAAGACT
195 TGGT-GGGAAAAAACCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACT
* * * *
2113544 ATGTTTATGATGCCTAATCC-AGAAAAGAATTGGGATTAGCATGAGTATTCATGTTTGTCGAATT
259 ATGTTTATGGTGCCTAATCCTA-AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATT
* * * * **
2113608 TAAGAGACAAACTTTGATTCTATCAAAAATGGTAGAAAGAAAGGCTTTTGTTGCAACACCAAAAT
323 TAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC
* * * *
2113673 ATCAATGTCATGTATCCTAAT-AAGAGTAATGTGTTTTGGCTTCCCAATCTTGAAAACAAGGGAG
388 ATCAATGTCATGTATCCTAATGAAG-GGAATGTGTTTTGGCTTCCCAATCTAGAAAAGAATGGAG
* *
2113737 ACTATTA-CAAAAATCGATGCTTGT
452 ACTATTATGAGAAATCGATGCTTGT
* * *
2113761 CTTATTTAGGGGATGAACTTTGATTTTAAGGAAAGTAGGGCGAAGAAAAGATTTCCATGACAAAA
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATG-CAAAA
* * * * *
2113826 -AAAATCATCAATATTATTTATCCTAATGAGAAAAATGTGTTTATAGTGCTTAATCATAAAATGA
65 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
* * * * *
2113890 ATGAAGATCATTACTAGAATCAATGTTTATCTCGTTTGAGGCACAAACTTAGACTTTTCCAAAAT
130 ATGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAT
*** * *
2113955 TGGCAAGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCG-TGTATCCTAATGAGAAGAC
195 TGGTGGGAA-AAAACCTTTCTTGCGAAACCAAAGCATCAATAT-GATGTATCCTAATGAGAAGAC
* * *
2114019 TATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGCCATATT
258 TATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATT
* *
2114084 TAAGAGA-AAACTTTGATTCTATAAAAAATGGTGTAAAGAAAAGCTTTTCTTGCGACACCAAAGC
323 TAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC
* * * *
2114148 ATCAATGTCATGTATCCTAAGGAGGGGGATGTGTTTTGGCTTCCCAATCTTGAAATAG-A---A-
388 ATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTAGAAA-AGAATGGAG
* * *
2114208 ACTGTTATG-GGAATCGATGCTTAT
452 ACTATTATGAGAAATCGATGCTTGT
* * * * *
2114232 CTTATTTAAGTGATGAGCTTTGATTTTAAGGAAAATAGTGCAAAAAAAAGATTTTCATGCAAAAG
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG
* * * *
2114297 AAAATCATCAATATCGTTTATCCTAATGAGAAGAATGTGATTATAGTGCCTAATCACAACATGAA
66 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * *
2114362 TGAAGATTATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATT
131 TGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATT
* * * *
2114427 GGTGGGAAAAAAGCTTTTCTCGCAAAACCAAAGCATTAATATGATGTATCCTAATGAGAAGACTA
196 GGTGGGAAAAAA-CCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTA
* * * * *
2114492 TGTTTATGGTGCCTAATCCTTAAATGAATAGGCATTAGTATG-GCTATTCTTGTTTGTCGTATTT
260 TGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAG-TATTCATGTTTGTCGTATTT
* * * * * ** *
2114556 AATAGTCAAACTTTGATTCTATCAAAAATGGTTGAAGGAAAGGCTTTTCTCACAACACCAAAGCA
324 AAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
* * ** * * * *
2114621 TCAATATCATGTATCCTAATGAGGGGAATGCATTTTGGCTTCCCAATCTTGAAAACAATAGAGAT
389 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTAGAAAAGAATGGAGAC
* * *
2114686 TGTTACGAG-AATCGATGCTAGT
454 TATTATGAGAAATCGATGCTTGT
* * **
2114708 CTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGC-AA-AAACGATTTGTATGCAAAAG
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG
* * * * *
2114771 AAAATAATTAATATCATTTATTCGAATGAGGAGAATTTGTTTATAGTGCCTAATCACAAAATGAA
66 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
** * * *
2114836 TGAAGATCATTACTAGAATCCCTGTTTGTCTCATTAGAGTCACGAACGTAGACTTTACAAAAATT
131 TGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATT
* * * * *
2114901 GGTGGGAAAAAAGCCTTGCTAGTGAAACCAAAGCATCAATATGATATATCCTAATAAGAAGACTA
196 GGTGGGAAAAAA-CCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTA
* ** * * *
2114966 TGTTTATGGTGCCTAATCCTAGAAAGAATAAGGATTAGTATAAGTATTCATGTTTATCTTATTTA
260 TGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTA
* ** ** * *
2115031 AGAGATAAGTTTTGATTCTATCAAAAACAGTGGAAAGAAAAGATTTTCTTGCGACACCGAAGCAT
325 AGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAT
* * * * *
2115096 TAATGTCATGTATCCTGATGAAGGGAATATGTTTTTGCTTCCCAATCTAGAAAAGTATGGAGACT
390 CAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTAGAAAAGAATGGAGACT
*
2115161 ATTATGAGAAA-CGATGCTTAT
455 ATTATGAGAAATCGATGCTTGT
* *
2115182 CTTATTTAAAGGATGACCTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG
* * * * * *
2115247 TTAAATTATCAATTTTATTTATCGTAATGAGGAAAATGTGTTTACT-GTGCCTAATCACAAAATG
66 -AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA-TAGTGCCTAATCACAAAATG
** * * * *** * * ** **
2115311 GTTGAAGGTCATAACTAGAATCCATGTTCACCT-TTTTCTAGATAAAAACTTAGACTTTACAAAA
129 AATGAAGATCATTACTAGAATCAATGTTTGTCTCATTT-GAGGCACGAACTTAGACTTTACAAAA
* * *
2115375 ATTGGTGGAAAAAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATGATGTATCCTAATAAGAAG
193 ATTGGTGG-GAAAAAA-CCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAG
* * * * * * * ** *
2115440 ACTACGTTTATGCTACCTAATCCAGAAAAAAACAT--GGATTAGCATGAGTATTTACATTTGTCA
256 ACTATGTTTATGGTGCCTAATCC-TAAAAAGA-ATGGGGATTAGTATGAGTATTCATGTTTGTCG
* * * * * * * * * * *
2115503 AATTTAAAAGAAAAACTTTGATTCT-TTAAAAAAGGTAGAAAAAAAAGATTTTCTTGTGACATCG
319 TATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCA
* * * * *
2115567 AAGCACCAATGTCATATATCCTAATGAAAGGAATATGTTTTAGCTTCCCAATCTAGAAAAGAATG
384 AAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTAGAAAAGAATG
*
2115632 GAGGCTATTATGAGAAA-CGATGCTTGT
449 GAGACTATTATGAGAAATCGATGCTTGT
* * * * *
2115659 CTTATTTAAGGAATGAACTTTGATTTTAAGAAAAATCA-AGCAAAG--AAGATTTTCATGTAAAA
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT-AGGGCAAAGAAAAGATTTCCATGCAAAA
* * * * * * *
2115721 GAAAATCATTATTATCATTTACCCTAATGAGGAGAATTTGATTATAGTGCCTAATCCCAAAATGG
65 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
* * * *
2115786 GTGAAGATCATTACTAGAATCCATGTTTGTCTCATTAGAGGTACGAACTTAGACTTTACAAAAAT
130 ATGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAT
* *
2115851 TAGTGGGAAAAAACCTTTCTTACGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTA
195 TGGTGGGAAAAAACCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTA
* * *
2115916 TGTTTATGGTGCTTAATCCTAAAAAGAATGGGGATTAGTATAAGGATTCATGTTTGTCGTATTTA
260 TGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTA
* * *
2115981 AGAGACAAA-TATTGATTCCATCAAAAATGGTAGAAAGAAAAGTTTTTCTTGCGACACCGAAA-C
325 AGAGACAAACT-TTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACC-AAAGC
* * * ** * * * *
2116044 ATTAATGTCTTGTATCTTGGTGAAGGGAAAGTGTTTTGGCTTCCCAATCCAGAAAAGGATGGACA
388 ATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTAGAAAAGAATGGAGA
*
2116109 CTATTATGAGAAAT-GATGCTTAT
453 CTATTATGAGAAATCGATGCTTGT
*
2116132 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGGAAAGATTTCCATGCAAAAG
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG
* * * * ** * * ** *
2116197 AAAACCGTCAATATCATTTATTCTAATTAGGAGAATGCATTTAGACTGTGTAA-CAACCAAATGA
66 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC-ACAAAATGA
* *
2116261 ATGAAGATCATTACAAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACCAAAAT
130 ATGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAT
* *
2116326 TGGTGGGAAGAAAACCTTTCTTGCGAAACCAAAGCATCGATATCATGTATCCTAATGAGAAGACT
195 TGGTGGGAA-AAAACCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACT
* * * * * *
2116391 ATGTTTATGGTGCCTAGTCCTTAAAAGAATGGGGATTAGTATGACTATTCTTGTTTGTCATATTA
259 ATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTT
* * *** * * *
2116456 AAGAGACAAACCTTGATTTTATCAAAAACAATGAAAAGAAAAGCTTTTCTTGCTAGACCAAAGCA
324 AAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
* *** * * *
2116521 TCAATGTCCTGTATCCTGGGGAAGGGAATGTGTTTCGGCTTCCTAATCTAAAAAAGAATGGAGAC
389 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTAGAAAAGAATGGAGAC
*
2116586 TATTAAGAGAAA-CGATGCTTGT
454 TATTATGAGAAATCGATGCTTGT
* * * *
2116608 ATTATTTACGGGATAAACTTTGATTTTAAGGAAAATAGGGAAAAG-AAAGA-TTCCATGCAAAAG
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG
* * * *
2116671 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGCGTTTAGAGTGCGTAACCACAAAATGAA
66 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * * *
2116736 TGAAGATCATTACTAAAATCAATGTTTGTCTCATTTGAGGCACAAACATAGACTTTACCAAAATT
131 TGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATT
** * * * *
2116801 GGCAGGAAGAAAGCCTTTCTT-CGAAACTC-AAGCATCGATGTCG-TGTATCGTAATGAGAAGAC
196 GGTGGGAA-AAAACCTTTCTTGCGAAAC-CAAAGCATCAATAT-GATGTATCCTAATGAGAAGAC
* * * * *
2116863 TATGTTTATGGTGCCTAATCCTTAAAAGAATAGGGACTAGTATGACTATTCTTGTTTGTCGTATT
258 TATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATT
* * *
2116928 T-AGTAGATAAACTTTGAATCTATCAAAAATGGT-GTAAGAAAAGCTTTTCTTGCGACACCAAAG
323 TAAG-AGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAG
* * *
2116991 CATCAATGTCATGTATCCTAATGAGGGGAATGCGTTTTGGCTTCCCAATCTTGAAAAGAATGG-G
387 CATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTAGAAAAGAATGGAG
** *
2117055 ACTGCTATGAG-AATCGAGGCTTGT
452 ACTATTATGAGAAATCGATGCTTGT
* * * *
2117079 CTTTTTTAAGGGGTGAACTTTGATTTTAA-GAAAACTAGGGCAAAGAAAAGATTTCTATGCAAAG
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAA-TAGGGCAAAGAAAAGATTTCCATGCAAAA
*
2117143 GAAAATCATCAATATCATTTATCCTAATGACGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
65 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
* * * * * * *
2117208 ATAAATATCATTTCTAGAATCCA----TGTCTCTTTTGAGACACGTACTTAGACTTTACAAAAAT
130 ATGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAT
* *
2117269 TGGTGGGAAAAAAGCC-TTCTTGCGAAACCAAAGCATCAATATGATGCATCCTAATGAGAATACT
195 TGGTGGGAAAAAA-CCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACT
* * * * ** * * *
2117333 AAGTTTATGGTGCCTAATCCTTAAAGGAACGATGATTAGTGTGAGTATTCCTGTTTGTCATATTT
259 ATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTT
* * * * *
2117398 AA-AGGACAAACTTTGATTCTATCAAAAACGATAGAAAGAAAAGCTTTTCTTGTGACTCCAAAGC
324 AAGA-GACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC
* * * * ** * * ** **
2117462 ATAAATTTCATGTCTCCTAATG-AGGAAATACGTTTTGGCTTCCTAATGT--TTAAGAATCAAGA
388 ATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTAGAAAAGAATGGAGA
* * *
2117524 CTATTATGA-TAATCAATGCATGT
453 CTATTATGAGAAATCGATGCTTGT
* * *
2117547 TTTATTT-AGGGAATGAACTTTGATTTCAAGGAAAATAGGGCAAAGAAAAAAATTT-CATGCAAA
1 CTTATTTAAGGG-ATGAACTTTGATTTTAAGGAAAATAGGGCAAAG-AAAAGATTTCCATGCAAA
* * *
2117610 AGAAAATCATTAATATCATTTTTCCTAATGAGGAGAATGTGTTTATAGTGCCTAAGCACAAAATG
64 AGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG
* * * * **
2117675 AATGAAGAACATTACTAGAATTAATGTTTGTCTTATTTCAGGCGTGAACTTAGACTTTACAAAAA
129 AATGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAA
*** * * *
2117740 TT-GACAGAAAGAAAGCCTTTCTTAC-AAATCCAAGGCATCAATATGATGTATCCAAATGAGAAG
194 TTGGTGGGAAA-AAA-CCTTTCTTGCGAAA-CCAAAGCATCAATATGATGTATCCTAATGAGAAG
* * * ** * ** *
2117803 ACTATGTTTACGGT-CTCTAATCCTGAAAAGAACGATGATTAGCATGAACATTCATGTTTGTCGA
256 ACTATGTTTATGGTGC-CTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGT
* * * * * * *
2117867 ATTTAGGAGACAAACTTTAATTCTATCAAAAATGGTGGAAAGAAAAGATTTTTTTGCAACATCGA
320 ATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAA
* * ** * * ** * *
2117932 AGCATCAACGTCACGTATCCCGATGAA-GGAATATGCTTTCACTTTCCAATATAGAAAAGAATGG
385 AGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTAGAAAAGAATGG
*
2117996 AGACTGTTATGAGAAA-CGATGCTTGT
450 AGACTATTATGAGAAATCGATGCTTGT
* * *
2118022 ATTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGGAAAGACTTCCATGCAAAAG
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG
* * * *
2118087 AAAATCATCAATATAATTTATCCTAATGAGGAGAATGTGTTTAGAGTGCGTAATCATAAAATGAA
66 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * * * * *
2118152 TGAAGATCATTACTAGAATGATTGTTTGTTTCATTTGAAGCATGAACTTAGACTTTACCAAAATT
131 TGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATT
** * * * * * * *
2118217 GGCAGGAAGAAAGCCTTTTTTGCGAAATCAAAGGATCGATATCATGTATCCTAATAAGAAGACTA
196 GGTGGGAA-AAAACCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTA
* * * * * * *
2118282 TGTTTAT-GTGCCTAATCCTTAAAATAATGAGGACTAGTATGACTATTCTTGTTTGTTGTATTTA
260 TGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTA
* * * * * **
2118346 AGAGATAAACTTTGATTCTATCGAAAACGGTGGAAAGAAAAGTTTTTCCTATGACACCAAAGCAT
325 AGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAT
* * * ** *
2118411 CAATGTCATGTATCCTAATGAGGGGAATTTATTTTGGCTTCTTAATCTTGGAAAA-AATGGAGAC
390 CAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATC-TAGAAAAGAATGGAGAC
** * *
2118475 TGCTACGAG-AATCGATACTTGT
454 TATTATGAGAAATCGATGCTTGT
* * * * * ** *
2118497 CTTATTTAAGGGACGAACTTTGATTTTGAGCAAAATAAGGCATAGAAAAGATTTTTATGCAAAGG
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG
* * * **
2118562 AAAATCATCAATATCATTTATTCTAATGACGAGATTGTGTTTATAGTGCCTAATCACAACTTGAA
66 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* ** * * * * * *
2118627 TAAAGGCCATTACTAGAATCCATGTTTCTCTCATTTAATGCTCGAACTTAGACTTTACGAAAATT
131 TGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATT
* *
2118692 GGTTGGAAAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTA
196 GGTGGGAAAAAA-CCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTA
* * *
2118757 TGTTTATGGTGCCTAATCCTGAAAAGAATGAGGATTAGTAT-AGTCTATTCATGTTTGTTGTATT
260 TGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAG--TATTCATGTTTGTCGTATT
* * * *
2118821 TAAGAGTCAAA-TTTGATTCTATCAAAACT-ATGGAAAGAAAAGCTTTTCTTGTGACACCAAAGC
323 TAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC
* * * ** *
2118884 ATCAATGTCACGTATCCTAATGAAGGGAATATGTTTTGGCTTCCCAATGT--TTAAGAATCGAGA
388 ATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTAGAAAAGAATGGAGA
* * * *
2118947 TTGTTACGAG-AATCGATGCATGT
453 CTATTATGAGAAATCGATGCTTGT
* * *
2118970 CTTATTT-AGGGATGAACTTTGATTTTAAGAAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAG
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG
* * *
2119034 AAAATCATCAATATCATTTTTCCTATTGA-GAAAAGTGTGTTTATAGTGCCTAATCACAAAATGA
66 AAAATCATCAATATCATTTATCCTAATGAGGAGAA-TGTGTTTATAGTGCCTAATCACAAAATGA
* ** * * *
2119098 ATGATGAAAATTACTAAAATCAATGTTTGTCAT-ATTTGAGGCACGAACTTAAACTTGACAAAAA
130 ATGAAGATCATTACTAGAATCAATGTTTGTC-TCATTTGAGGCACGAACTTAGACTTTACAAAAA
*** ** * * * * * * *
2119162 TTGGCAAGAAGAAAGGCTTTCTTACAAAAACAAAGCGTCGATATCG-TATATCCTAATAAGAAGA
194 TTGGTGGGAA-AAAACCTTTCTTGCGAAACCAAAGCATCAATAT-GATGTATCCTAATGAGAAGA
* * * * * * *
2119226 C-AGTGTTTATAGTGCCTAATCCTAAATAGAATTGGGATTAGTATGACTATTTATGTTTGACTTA
257 CTA-TGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTA
* * * * * * * * *
2119290 TTTAGGAGACACACCTTGATTCTATCAACAATGGCGGAAAGAAAGGCTTTTCTTGTGACACTAAG
321 TTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAA
* * *
2119355 GCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTGGCTTCCTAATCTTAAAAAAGAATGG
386 GCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATC-TAGAAAAGAATGG
* * * *
2119420 AGATTGTTACGAG-AATCGAAGCTTGT
450 AGACTATTATGAGAAATCGATGCTTGT
* ** * * *
2119446 CTTATTTAATGGACAAACGTTGATTTTAAGGAAAATAGGGCAAAGAAAATATTTCCATGCCAAAG
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG
* * ** * *
2119511 AAAATCATCAAGATCATTTATCATAAAAAGGAGAATGTGTTTATAGCGCCTAATCACAAAACGAA
66 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * * * * * * *
2119576 TAAACATCATTTCTAGAATCCATATTTGTCTCTTTTGAGACATGAACTTAGACTTTACAAAAATT
131 TGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATT
* * * * *
2119641 GGTGAGGAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCGAAGGAGAATACAA
196 GGTG-GGAAAAAACCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTA
* * *
2119706 TGTTTATGGTGCCTAATCTTGAAAAGAAT-GGGATTAGTATAAGTATTCATGTTTGTCGTATTTA
260 TGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTA
* ** *
2119770 AGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGATTTTCTTGCGATGCCGAAGCAT
325 AGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAT
* ** * * *
2119835 CAATGTCATGTAAT-TTGTTGAAGGGAATGTGTATTT-GCTT-CTAGTCCAGAAAAGAATGGAGA
390 CAATGTCATGT-ATCCTAATGAAGGGAATGTGT-TTTGGCTTCCCAATCTAGAAAAGAATGGAGA
* * *
2119897 CGATTATGAGAAAT-GATGTTTAT
453 CTATTATGAGAAATCGATGCTTGT
* ** * *
2119920 CTTATTTAAAGGATGAACTTCAATTTTAAGGAATATAGGGCAAAGAAAAGATTTCCATTCAAAAG
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG
* *
2119985 AAAGTCATCAATTTCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
66 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * * * * * * * *
2120050 TGATG-GCATT-TTCAGAATCTAGGTTTATCTCATTTGCGGCACGAACTTAGACTTTACCAAACT
131 TGAAGATCATTACT-AGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAT
* * * * * * * * ** * *
2120113 CGGCGAGACGAAAGCCTTTCTTGCAAAACTAAAGCATCGATATCTTGTATCCTAATAAGAATACT
195 TGGTGGGA-AAAAACCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACT
* * * *
2120178 ATGTTTATGGTGCCTAATCCTAAAAAGAATAGGGATTAGTATCATTATTCATGTTTGTCTTATTT
259 ATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTT
* ** * * ** * * * *
2120243 AAGTGTTAAACTTTGATTCTAACCAAAACAGTAGAAA-AAAA-CTGTTCATGCAACACCAAAGCA
324 AAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
* * *
2120306 TTAATGTCATGTATCCTAATG-AGCGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATAGAGA
389 TCAATGTCATGTATCCTAATGAAG-GGAATGTGTTTTGGCTTCCCAATCTAGAAAAGAATGGAGA
* * ** *
2120370 GTGTTGCGAG-AATCAATGCTTGT
453 CTATTATGAGAAATCGATGCTTGT
* * *
2120393 CTTATTTAAGGGATGAACTTTGATTTTGAGGAAAGTAGGGCAAAGAAAAGATTTCCATGCAAAAT
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG
* ** * * *
2120458 AAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCATGACAGGAT
66 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * * * * *
2120523 TGAAGATCTTTATTGGAATCCATGCTTGTCTCATTTGAGACACGAACTTAGACTTT--AAAAATT
131 TGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATT
* * * *
2120586 GGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGAGGTATCTTAATGAGAACAATA
196 GGTGGGAAAAAA-CCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTA
* * *** * * **
2120651 TATTTATGGTGCCAAAT-CTAGAAAAGAACATGGATTAGCATGAGTATTCACGTTTGTCAAATTT
260 TGTTTATGGTGCCTAATCCTA-AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTT
* ** * * ** * *
2120715 AGGAGACAAACTTCAATTCTATCAAAAAAGAGAGGAAAGAAAATATTTTCTTGTGACACCGAAGC
324 AAGAGACAAACTTTGATTCTATCAAAAATG-GTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC
* * * * * * *
2120780 ATCAATGTCATGTATCTTGATGAAAGGAATGTGTTTTTGCTTCCCAGTCCAGAAAACAATGGAGA
388 ATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTAGAAAAGAATGGAGA
2120845 CTATTATGAGAAA-CGATGCTTGT
453 CTATTATGAGAAATCGATGCTTGT
* *
2120868 CTTATTTAAGGGATGAACATCGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG
* ** *
2120933 AAAATCATCAATTTTGTTTATCCTAATGAGGAGAATGTGTTTATAATGCCTAATCACAAAATGAA
66 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * *
2120998 TGAAGATCACTACTAGAATCAATGTTTGTCTCATTT-ATGGCACAAACTTAGACTTTTCAAAAAT
131 TGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGA-GGCACGAACTTAGACTTTACAAAAAT
* ** * * * *
2121062 TTGTGGGAAAAAGGTCTTTCTTGCGAAACAAAAGCATTAATATGGTGTATCCTAATGAGAAGACA
195 TGGTGGGAAAAA-ACCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACT
* * * *
2121127 ATGTTTATGGTGCCTAATCCTAGAAATAATGGGGATTAGTATAAGTATTCATGTTAGTCGTATTT
259 ATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTT
* * * * * *
2121192 AAGAGGCAAACTTTAATTCTATCAAAAACGGTAGAAAAAAAAACTTTTCTT-CTGACACCAAAGC
324 AAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGC-GACACCAAAGC
* * * *
2121256 ATCAATGCCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCTAATCTTGGAAAGAATGGAGA
388 ATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTAGAAAAGAATGGAGA
* * * * *
2121321 TTGTTATGAG-AATCAAAGCTTAT
453 CTATTATGAGAAATCGATGCTTGT
*
2121344 CTTATGTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAA-ATTTCCATGCAAAAG
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG
* * **
2121408 AAAAATCATCAATGTCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATTACAATTTGA
66 -AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
* * * * * *
2121473 TTGAAGATCATTACCAGAATCCATGTTTGTCTCATTAGAGGCATGAACTTAGACTATACAAAAAT
130 ATGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAT
* *
2121538 TGGTGGGAAAAAAGCCTTTCTTGTGAAGCCAAAGCATCAATATGATGTATCCTAAT-----GA-T
195 TGGTGGGAAAAAA-CCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACT
** * ** * * * **
2121597 ATGTTTATTATGCCTAATCTTGGAAAGAACGGAGATTAGCATGAGTATTCATGTTTGTCAAATTT
259 ATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTT
* * * ** * * * *
2121662 AATAGACAACCTTTGATTCTATAAAAAACAGTGGAAAGCAAAGATTTTCTTGCAACACCGAAGCA
324 AAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
* * * * * ** ** * *
2121727 TAAATGTAATATATCTTGATGAAGGGAATGCATTTTTTCTTCCTAATCTAGAAAAGAATGAAGAC
389 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTAGAAAAGAATGGAGAC
** *
2121792 TATTGCGAGAAA-CGATGCATGT
454 TATTATGAGAAATCGATGCTTGT
** * * * *
2121814 CTTATTTGTGGGATGAACTTCGTTTTTAAGGAGAATAGGGCAAAGAAAAGATTTCTATGCAAAAG
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG
* * * * *
2121879 AAAATCATCAATTTCATTTATCCTAATGAGGAGAATGTGTTTGTAGTGCCTATTCAAAAAATGAG
66 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* *
2121944 TGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGACACAAACTTAGACTTTACAAAAATT
131 TGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATT
* *
2122009 GGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAAAATACTA
196 GGTGGGAAAAAA-CCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTA
* * * *
2122074 TGTTTATGGTGCCTAATCCAAAAAAGAACT-GGGATTAGCATAAGTATTCATGTTTGTCGAATTT
260 TGTTTATGGTGCCTAATCCTAAAAAGAA-TGGGGATTAGTATGAGTATTCATGTTTGTCGTATTT
* * * * * * *
2122138 AAGATACAAACTTTGATTCTGTCAAAAATAGTGGAAAGAAAGGCTTTTATTGCGACACTAAAGTA
324 AAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
* * * **
2122203 TCAATGTCATGTATCCTAAT-AAGAGTAATGTGTTTTGGCTTCCCAATCTTGAAAATAGGGGAGA
389 TCAATGTCATGTATCCTAATGAAG-GGAATGTGTTTTGGCTTCCCAATCTAGAAAAGAATGGAGA
* *
2122267 CTATTATGA-AAATCGATACATGT
453 CTATTATGAGAAATCGATGCTTGT
* * *
2122290 CTAATTT-AGGGATGAACTTTGATTTTAAGGAGAGTAGGGCAAAGAAAAGATTTCCATGACAAAA
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATG-CAAAA
* * * *
2122354 GAAAATCATCAATATCACTTATCCAAATGAGAAAAATGTGTTTATAGTGCCTAATCACAAAATGA
65 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
* * * * *
2122419 ATGAAGATCATTACTAGAGTCAATGTTTATCTCATTTGAGACACGAACTTAGACTTTTCCAAAAT
130 ATGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAT
*** * * * * * *
2122484 TGGCAAGAAGAAAGCCTTTCTTGTGAAACAAAAGCATCGATATCATGTATCCTAAGGAGAAGACT
195 TGGTGGGAA-AAAACCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACT
* * * * * *
2122549 ATGTTTACGGTGCATAATCCTGAAAA-AATGGGGATTAGTATAACTATTCATGTTTGTCATATTT
259 ATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTT
* * * * * *
2122613 AAAAG-GAAACTTTGATTCTATAAAAAATGGTGGAAAAAAAAGCTTTTCTTGCAACACAAAAGCA
324 AAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
* *
2122677 TCAATGTCATGTATCCTAATG-AGGGAAATTTGTTTTGGCTTCCCAATCTTA-AAAAAAATGGAG
389 TCAATGTCATGTATCCTAATGAAGGG-AATGTGTTTTGGCTTCCCAATC-TAGAAAAGAATGGAG
* ** ** *
2122740 ATTGCTACAAG-AATCGACGCTTGT
452 ACTATTATGAGAAATCGATGCTTGT
* * * * *
2122764 CTTATTTAAGGGATGAACTTGGATTTTGAGCAAAATAGGGCAAAGAAAAGATTTCTATGCAAAGG
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG
* * **
2122829 AAAATCATCAATATCATTTAACCTAATGACGAGAATGTGTTTATAGTGCCTAATCACAACTTGAA
66 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * * * * *
2122894 T-AA-ATTCCATTACTAGAATCCATGTTTCTCTCATTTGATGCTCAAACTTAGACTTTACGAAAA
131 TGAAGA-T-CATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAA
* * ** ** *
2122957 TTAGTAGGAAAAAAGCCTTTCTTATGAGGCCAAAGCATCAATATGATGTATCCTAATGAGAGGAC
194 TTGGTGGGAAAAAA-CCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGAC
* * * *
2123022 TATGTTTATGGTGCCTAATCCTGAAATGAATGGGGATTAGTAT-AGCTATTCGTGTTTGTTGTAT
258 TATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAG-TATTCATGTTTGTCGTAT
* * * * **
2123086 TTAAGTGTCAAACTTTGATTCTATCAAAAACT-GTGGAGAGAAAAGTTTTTCTTGAAACACCAAA
322 TTAAGAGACAAACTTTGATTCTATCAAAAA-TGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAA
* * * * ** **
2123150 GCATCAATGTCATGTATCCTAATGAAGGGAATATGTTTTGCCTTCCTAATGT--TTAAGAATCTA
386 GCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTAGAAAAGAATGGA
* *
2123213 GACTGTTATGAG-AATCGATGCATGT
451 GACTATTATGAGAAATCGATGCTTGT
* * * * *
2123238 TTTATTTAA-GGATGAACTTTGATTTTAAGGAAAATAAGGTAAAGAAAAGATTTTCATTCAAAAG
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG
* * * *
2123302 AAAATCATCAATATCATTTTTCCTAATGAGGAAAATGTGTTTGTAGTGCCTAATCACGAAATGAA
66 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * ** **
2123367 TGATGAACATTACTAGAATCAATGTTTGTGGCATTTGAGGTGCGAACTTAGAC-TTACAAAAATT
131 TGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATT
** * * * * * *
2123431 GGTAAGAAGAAAGCCTTTCTTGC-AAGAGCAAAGCATCGATATCATATATCCTAATAAGAAGACT
196 GGTGGGAA-AAAACCTTTCTTGCGAA-ACCAAAGCATCAATATGATGTATCCTAATGAGAAGACT
* * * * * * *
2123495 ATGTTTATAGTCCCTAATCCTAAACAGAATTGGGATTAGTATGACTATTTATGTTTGTCTTATTT
259 ATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTT
* * * * *
2123560 AGGAGACAAACTTTGATTCTATCAACAACGGTGGAAAG-AAAGACTTTTCTTGCGACACCAAGGA
324 AAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAG-CTTTTCTTGCGACACCAAAGC
* * * * *
2123624 ATCAATGTCATGCATCCTAATGAA-AGAATTGTGTTTTGGTTTCCCAAACTTGAAAAGAATGGAG
388 ATCAATGTCATGTATCCTAATGAAGGGAA-TGTGTTTTGGCTTCCCAATCTAGAAAAGAATGGAG
* * ** *
2123688 ATTGTTACAAG-AATCGAAGCTTGT
452 ACTATTATGAGAAATCGATGCTTGT
* * *
2123712 CTTATTTAAGGGATGAACTATGATTTTAAGGAAAACAGGGCAAAGAAAAAATTTCCATGCAAAAG
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG
* * * * * *
2123777 AAAATCATCAATATCGTTTATCTTAAAGAGGAGAATGTGTTTACAGCGTCTAATCACAAAATGAA
66 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * * * * * * * * *
2123842 TAAACATCATTTCTAGAATCCATGTTTGTCTCCTTTAAGACATGAACTTAGACTTTATAGAAATT
131 TGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATT
* * * *
2123907 GGTGGGGAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATTCGAATGAGAAGACTA
196 GGT-GGGAAAAAACCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTA
* * * * *
2123972 TGTTTATGGTGCCTAACCCTGAAAAGAATGGGGATTAGCATAAGTATTCATGTTTGTCGTATTTG
260 TGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTA
* * *
2124037 AGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGATTTTCTTGCGACACCAAAGCAA
325 AGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAT
* ** * ** *
2124102 CAATGTCATGTATCTTGTTGAAGGGAATGTGCTTTT-GCTTCCTAGGCCAGAAAAGAATGGAGAC
390 CAATGTCATGTATCCTAATGAAGGGAATGTG-TTTTGGCTTCCCAATCTAGAAAAGAATGGAGAC
* *
2124166 TATTATGAGAAA-CAATGTTTGT
454 TATTATGAGAAATCGATGCTTGT
*
2124188 CTTATTTAAGGGATGAACTTCGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAA-
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG
* *
2124252 AAAAGTCACCAATTTCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
66 AAAA-TCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
* * * * * * * *
2124317 ATGATGA-CATT-TTCAGAATCTAGGTTTATCTCATTTGCGGCAGGAACTTAGACTTTACCAAAA
130 ATGAAGATCATTACT-AGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAA
* * * * * * *
2124380 TTGGCGAGAAGAAAGCCTTTCTTGC-AAAACATAAGCATCGATATCATGTATCCTAATAAGAAGA
194 TTGGTGGGAA-AAAACCTTTCTTGCGAAACCA-AAGCATCAATATGATGTATCCTAATGAGAAGA
* * * *
2124444 CTATGTTTATGGTGCCTAATCCTAAAAAGAATAGGGATTAGTATCACTATTCATGTTTGTCTTAT
257 CTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTAT
** * * * * * *
2124509 TTAACTGTCAAACTTTGATTC-ATGCCAAAACGGTGGAAA-AAAA-CTGTTCATGCAACACCAAA
322 TTAAGAGACAAACTTTGATTCTAT-CAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAA
* * * *
2124571 GTATCAATGTCATGTATCCTAACG-AGCGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATTG
386 GCATCAATGTCATGTATCCTAATGAAG-GGAATGTGTTTTGGCTTCCCAATCTAGAAAAGAATGG
* * * * * *
2124635 AAAGTGTTGTGAG-AATCAAT-CTTGC
450 AGACTATTATGAGAAATCGATGCTTGT
* *
2124660 CTTATTTAAAGGATGAACTTTGATTTTAAGGAAAGTAGGGCAAAGAAAAGATTTCCATGCAAAAG
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG
* * * * * * *
2124725 AAAATCATCAATATCGTTTATCCTACTGAGGAGAATATGTTTATCGTGCCTAATCACGACATGAT
66 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* *
2124790 TGAAGATCATTACTAGAAT--ATGTTTGTCTCATTTGAGACATGAACTTAGACTTTACAAAAATT
131 TGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATT
* * *
2124853 GGTGGGATAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCCTAATGACAAGACTA
196 GGTGGGA-AAAAACCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTA
* * * * ** * * * *
2124918 TATTTATGGTGCCAAATCCAAAAAATAACAGGGATTAGCATGAGTGTTCACGTTTGTCGAATTTA
260 TGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTA
* ** * **
2124983 AGAGACAAACTTCGATTCTATCAAAAAATGGTGGAAAGAAAATATTTTCTTGTGACACCGTAGCA
325 AGAGACAAACTTTGATTCTATC-AAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
* *
2125048 TCAATGTCATGTATCC-AGATGAAGGGAATGTGCTTTT-TCTTCCCAGTCTAGAAAAGAATGGAG
389 TCAATGTCATGTATCCTA-ATGAAGGGAATGTG-TTTTGGCTTCCCAATCTAGAAAAGAATGGAG
* *
2125111 ACTATTACGAGAAA-CGATGATTGT
452 ACTATTATGAGAAATCGATGCTTGT
* * * *
2125135 CTTATTTAAGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTTC-TCCGAAA
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGA-TTTCCATGCAAAA
* * * * *
2125199 GAAAATCATCAATTTCGTTTATCCTAGTGAAGAGAATGTGTTTATAGTGCCTAATCACAAAATCA
65 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
* * *
2125264 ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT-ATGGCACAAACTTAGACTTTTCAAAAA
130 ATGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGA-GGCACGAACTTAGACTTTACAAAAA
* * * * *
2125328 TTTGTGGGAAAAAAGCCTTTCTTGTGAAACCAAAGCATTAATATGGTGCATCCTAATGAGAAGAC
194 TTGGTGGGAAAAAA-CCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGAC
* * * * *
2125393 AATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATAAGTATTCATGTTAGTCGTATT
258 TATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATT
* * * *
2125458 TAAGAGACAAACTTTAATTCTATCAAAAACGGTGGAAA-AAAAGCTTTTCGTGTGACACCAAAGC
323 TAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC
* * ** * *
2125522 ATCGATGCCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCATAATCTTGAAAAGAGTGGAGA
388 ATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTAGAAAAGAATGGAGA
* * * * *
2125587 TTGTTACGAG-AATCGATACATGT
453 CTATTATGAGAAATCGATGCTTGT
* * * * * * *
2125610 CCTATTT-AGAGGATGAACTTTGATTTTAAAGAAAATAGGGTAAAGGAAAGATTTTCATACCAAA
1 CTTATTTAAG-GGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAA
* * * * * ***
2125674 GAAAATCATCAATGTCATTTATCTTAATGAGAAGAATGTGTTTATAGTGCTTAATTACAGCTTGA
65 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
* * * ** *
2125739 ATGAAGATCATTACCAAAAT-ACATGTTTGTCTCATTAGAGGCGTGAACTTAGACTATACAAAAA
130 ATGAAGATCATTACTAGAATCA-ATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAA
* * * *
2125803 TTGGTGAGAAAAATGCCTTTTTTGTGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGAC
194 TTGGTGGGAAAAA-ACCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGAC
* * * * * * *
2125868 TACGTTTATTGTGCCTACTCCTAGAAAGAATGGGGATTAGCATGAGTATTCATGTTT-ACTGAAT
258 TATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTC-GTAT
* *** ** *
2125932 TTAAGAGACAAACTTTGATTCTATAAAAAACAATGGAAAGAAAATATTTTCTTGCGACACCGAAG
322 TTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAG
** * * * ** * *
2125997 CATCAATGTCACATATCCTGATGAAGAGAATGCGTTTTTTCTTCCTAATC-CGAAAAAGAATGGA
387 CATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTAG-AAAAGAATGGA
* * *
2126061 GATTATTGTGAGAAAT-GATGCATGT
451 GACTATTATGAGAAATCGATGCTTGT
** * *
2126086 CTTATTTGTGGGATGAACTTCGATTTTAAGGAGAATAGGGCAAAAGAAAA
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGC-AAAGAAAA
2126136 TCATCAATTT
Statistics
Matches: 10703, Mismatches: 1915, Indels: 465
0.82 0.15 0.04
Matches are distributed among these distances:
467 10 0.00
468 145 0.01
469 187 0.02
470 443 0.04
471 580 0.05
472 1096 0.10
473 1161 0.11
474 1504 0.14
475 2120 0.20
476 2471 0.23
477 853 0.08
478 126 0.01
479 5 0.00
480 2 0.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.31
Consensus pattern (476 bp):
CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG
AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
TGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATT
GGTGGGAAAAAACCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTAT
GTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAA
GAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
AATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTAGAAAAGAATGGAGACTA
TTATGAGAAATCGATGCTTGT
Found at i:2127384 original size:158 final size:158
Alignment explanation
Indices: 2126254--2134043 Score: 971
Period size: 158 Copynumber: 49.3 Consensus size: 158
2126244 TAGGCTTTAC
* * * * *
2126254 AAAAATTGGTAGG-AAG-AAAGCTTTTCTAGCAAAACCAAAGCATCAGTACCATGTATCCTAATG
1 AAAAAATGGT-GGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG
***
2126317 AGAAGACTATGTTTATGGTTTTTAATCCTGAAAAGAATGG-GAATTAGTATGACTATTCATGTTT
65 AGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGAG-ATTAGTATG-CTATTCATGTTT
* * * *
2126381 GTCCTATTTTAGTGTCA-AACTTTTGATTCTA-
128 GTCTTATTTAAGAG-GATAAC-TTTGATTCTAT
* * * * *
2126412 AGCAAAACGGTGGAAAAAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATG
1 A-AAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG
* * * * * * * * * * **
2126477 AGCAGAATGTGTTTA-GGCTTCCCAATCTTGAAAAAAATGGAGAGT-GTTACTG-GAATCGATAC
65 AGAAGACTATGTTTATGG-TGCCTAATCCTGAAAAGAATGGAGATTAG-TA-TGCTATTC-ATGT
*
2126539 TTGTCTTATTT-AGGGGATGAACTTTGATT-T-T
126 TTGTCTTATTTAAGAGGAT-AACTTTGATTCTAT
* * * * * ** * *
2126570 AAGGAAA--GTAAGGCAAA-AGAAAGATTTCCATGCAAAAGAAAATCAT-AATATCATTTATCCT
1 AA-AAAATGGT--GG-AAAGA-AAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCT
* * * * * * * * * * *
2126631 AATGAGGAGAATGTTTTTATAGTGCCTAATCAC--AACATGAAAGAAGATCA-T-TACTAGAATC
61 AATGAGAAGACTATGTTTATGGTGCCTAATC-CTGAA-AAGAATGGAGATTAGTATGCT--ATTC
* * * * * ** * *
2126692 AAGGTTTGTCTCATTTGAGA-CACAAAGATAGACTT-TAC
122 -ATGTTTGTCTTATTTAAGAGGA-TAACTTTGA-TTCTAT
* * * * ** *
2126730 AAAAATTGGTGGGAA-AAAAGCCTTTCTTGTGAAACCAAAGCATCAATATGTTGTAT-CTAATAA
1 AAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA
* * * * * *
2126793 AAAGACTATATTTATGGTGCCTAAT-CTGGAAAAGAATGGGGATTAGCATGAGTATTCGTGTTTG
66 GAAGACTATGTTTATGGTGCCTAATCCT-GAAAAGAATGGAGATTAGTATG-CTATTCATGTTTG
** *
2126857 TCGAATTTAAGA-GACAAACTTTGATTCTAT
129 TCTTATTTAAGAGGA-TAACTTTGATTCTAT
* * * * * * * * * * *
2126887 CAAAGACGGTGGAAAGAAAGGCTTTTGTTGCGACACCAAAGTATTAATGTCACGTATCCTAATAA
1 AAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA
* * * * * * * * * * *
2126952 G-AGTAATGTGTTT-TGGCTTCCCAATCTTGAAAACAAGGGAGACT-GT-TGCGAAAATTGATGC
66 GAAG-ACTATGTTTATGG-TGCCTAATCCTGAAAAGAATGGAGATTAGTATGC---TATTCATGT
* * *
2127013 ATGTCTTATTT-AGGGGATGAAATTTGATT-T-T
126 TTGTCTTATTTAAGAGGAT-AACTTTGATTCTAT
* * * * * * * ** * *
2127044 AAGGAAAGTAGG-GCAAAAAAAAGGTTTCCATGACAAAAGAAAATCATCAATATCATTTATCCTA
1 AA--AAAAT-GGTGGAAAGAAAAGCTTTTCTTG-CGAAACCAAAGCATCAATATCATGTATCCTA
* * * * * * * * *
2127108 ATTAGAAAAATGTGTTTATAGTGCCTAATCAC--AAAATGAATGAAGATCA-T-TACTAGAATCA
62 ATGAGAAGACTATGTTTATGGTGCCTAATC-CTGAAAA-GAATGGAGATTAGTATGCT--ATTC-
* ** *
2127169 ATGTTTATCTCGTTT--GAGGCATGAACTTAGACTT-T-T
122 ATGTTTGTCTTATTTAAGAGG-AT-AACTTTGA-TTCTAT
** * * * * * *
2127205 CCAAGAT--TGGTAAGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCGATATCGTGTATCCTAAT
1 AAAAAATGGTGGAAAG-A-AAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAAT
*
2127268 GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTT
64 GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATG-CTATTCATGTTT
2127333 GTCTTATTTAAGAGGA-AACTTTGATTCTAT
128 GTCTTATTTAAGAGGATAACTTTGATTCTAT
* * *
2127363 AAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAGTATCATGCATCCTAATGA
1 AAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA
** * * * * * * * * ** * *
2127428 GGGGGA-TGTGTTT-TGGCTTCCCAATCTTGAAAATAATAGAAACT-GTTATGGGAATCGATGCT
66 -GAAGACTATGTTTATGG-TGCCTAATCCTGAAAAGAATGGAGATTAG-TATGCTATTC-ATGTT
** * *
2127490 CATCTTATTTAA-ATGATAAGCTTTGATTTTA-
127 TGTCTTATTTAAGAGGATAA-CTTTGATTCTAT
* * * * * ** * *
2127521 AGAAAAATAGTGCAAAGAAAAGGTTTCCATGC-AAAAGAAAGTCATCTATATCATTTATCCTAAT
1 A-AAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAG-CATCAATATCATGTATCCTAAT
* * * * * * * *
2127585 GAGAAGAATGTATTTATAGTGCCTAAT-CAGAACATGAATGAAGATTA-T-TGCTAGAATCCATG
64 GAGAAGACTATGTTTATGGTGCCTAATCCTGAA-AAGAATGGAGATTAGTATGCT---ATTCATG
* * *
2127647 TTTGTCTCATTT--GAGGCATGAACTTAGACTT-TAC
125 TTTGTCTTATTTAAGAGG-AT-AACTTTGA-TTCTAT
* * * * * *
2127681 AAAAATTGGTGGGAA-AAAAGCTTTTCTTGCGAAACCTAAGCATCAATATGATGTATCTTAATAA
1 AAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA
*
2127745 GAAGACTATGTTTATGGTGCCTAATCCTCAAAAGAATGG-GCATTAGTAAT--T-TT--TGTTTG
66 GAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGAG-ATTAGT-ATGCTATTCATGTTTG
* * * *
2127804 TCATATTTAATAGTAAAACTTTGATTCTAT
129 TCTTATTTAAGAGGATAACTTTGATTCTAT
* * ** *
2127834 CAAAAATGATGGAAAGAAAAGCTTTTCTCAC-AGCACCAAAGCATCAATATCATGTATCCTAATG
1 AAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGA-AACCAAAGCATCAATATCATGTATCCTAATG
** * * ** * * * ** **
2127898 AGGGGA--ATGCATTT-CGGCTTCCCCATCTTGAAAACAATGGAGATT-GTTACGAGAACCGATG
65 AGAAGACTATG--TTTATGG-TGCCTAATCCTGAAAAGAATGGAGATTAG-TATGCTATTC-ATG
* **
2127959 GTAATCTTATTTAA-AGGATGAACTTTGATT-T-T
125 TTTGTCTTATTTAAGAGGAT-AACTTTGATTCTAT
* * * ** * ** ** * * *
2127991 AAGGAAAATAG-AGCAA-AAAA--TATTTCTACACAAAAGAAAATAATTAATATCATTTATCCGA
1 AA--AAAATGGTGGAAAGAAAAGCT-TTTCT-TGCGAAACCAAAGCATCAATATCATGTATCCTA
* * * * * * * * * *
2128052 ATGGGGAGAATTTGTTTATAGTGCCTAATCAC--AAAATGAATGAAGATCATTACTAG-AATCCA
62 ATGAGAAGACTATGTTTATGGTGCCTAATC-CTGAAAA-GAATGGAGATTAGTA-T-GCTATTCA
* * * * *
2128114 TGTTTGTCTCA-TT-AGAGTCACGAACTTAGACTT-TAC
123 TGTTTGTCTTATTTAAGAG-GA-TAACTTTGA-TTCTAT
* * * * * * * * *
2128150 AAAAATTGATGGGAA-AAAAGCCTTTCTTGTGAAACCAAAGCGTCAATATGATATATCCTAATAA
1 AAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA
* *
2128214 GAAGACTATGTTTATGGTGCCTAATCCTAGAAAA-AATGGGGATTAATATAAG-TATTCATGTTT
66 GAAGACTATGTTTATGGTGCCTAATCCT-GAAAAGAATGGAGATTAGTAT--GCTATTCATGTTT
* * * * *
2128277 ATCATGTTTAA-AGAGACAAATTTTGATTCTAT
128 GTCTTATTTAAGAG-GA-TAACTTTGATTCTAT
* * * * * ** * *
2128309 CAAAAATGGTAGAAAGAAATGATTTTCTTGCGACACTGAAGCATCAATGTCATGTATCCTGATGA
1 AAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA
* * * * * * * * * * * * ** * * *
2128374 -AGGGAATGTGTTTTTGCTTCCCAATCCAGAAAAGTATGGAGACTATTACGAGAAATGATGCTTG
66 GA-AGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATG-CTATTCATGTTTG
*
2128438 TCTTATTTAAG-GGATGAACTTTGATTTTA-
129 TCTTATTTAAGAGGAT-AACTTTGATTCTAT
* * * * * ** * * * * *
2128467 AGAAAAATAAG-GCAAAGAAAAGATTTCCATGC-AATAGTTAAATCATCAATTTTATTTATCGTA
1 A-AAAAAT-GGTGGAAAGAAAAGCTTTTCTTGCGAA-A-CCAAAGCATCAATATCATGTATCCTA
* * * * * ** * * * * *
2128530 ATGAGGAGAATGTGTTTACT-GTGGCTAATCAC-AAAAAGGTTGAAAATCA-TAACTAG-AATCC
62 ATGAGAAGACTATGTTTA-TGGTGCCTAATC-CTGAAAAGAATGGAGATTAGT-A-T-GCTATTC
*** ** * * *
2128591 ATGTTCAACTCCTTCAAG-GTAGA-AACATAGACTT-TA-
122 ATGTTTGTCTTATTTAAGAG--GATAACTTTGA-TTCTAT
* ****
2128627 CAAAAATTCACGAGAA-AAAAGCTTTTCTTGCGAAACCAAAGCATCAAT-TCCATGTATCCTAAT
1 AAAAAATGGTGGA-AAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATAT-CATGTATCCTAAT
* * * * * * *
2128690 GACAAGACTGTGTTTATGGTGCTTAATCCTGAAAAAAATGGGGAATAGCT-TGACTATTTATGTT
64 GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAG-TATG-CTATTCATGTT
* * *
2128754 TGTCTTATTTAAGTGTCA-AACTTTGGTTCTA-
127 TGTCTTATTTAAGAG-GATAACTTTGATTCTAT
* *** * * * *
2128785 ACCAAAACAATGGAACA-AAAA-CTTTT-TATGCGACACCAAAGCATCAATGTCATGAAGCCTAA
1 A-AAAAATGGTGGAA-AGAAAAGCTTTTCT-TGCGAAACCAAAGCATCAATATCATGTATCCTAA
* *** * * * * * * * * * * ** *
2128847 TAACCGGAATTTATTT-TGGCTTCCCAAT-CTCGAAAAAAATAGAAAGT-GTTACGAGAATCAAT
63 TGAGAAGACTATGTTTATGG-TGCCTAATCCT-GAAAAGAATGGAGATTAG-TATGCTATTC-AT
** *
2128909 ACTTGTCTTATTTAAG-GGATGAACTTTAATT-T-T
124 GTTTGTCTTATTTAAGAGGAT-AACTTTGATTCTAT
* * * ** ** * *
2128942 AAGGAAAATAGG-GCAAAGAAAAGATTTTCATGTAAAAGAAAATCATCAATATCATTTATCCTAA
1 AA--AAAAT-GGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAA
* * * * * * * * *
2129006 TGAGAAGAATATATTTATAGTTCCTAATCAC--AACATG-ATTGAGGATCA-T-TACTAGAATCT
63 TGAGAAGACTATGTTTATGGTGCCTAATC-CTGAA-AAGAATGGA-GATTAGTATGCT--ATTC-
* * * * * * *
2129066 ATGTTCGTCTCATTTGAGA-CACGAACTTGGACTT-TAC
122 ATGTTTGTCTTATTTAAGAGGA-TAACTTTGA-TTCTAT
* * * * * *
2129103 AAAAATTGCG-GGGAA-AAAAGCCTTTCTTGCAAAACCAAAGCATCAATATTATGTATCCGAATG
1 AAAAAATG-GTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG
* * * * **
2129166 AGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAACAGG-GATTAGCATGAGTATTCACATTT
65 AGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAA-TGGAGATTAGTATG-CTATTCATGTTT
** * *
2129230 GTCGAATTTAAGA-GACAAACTTTAATTCTAT
128 GTCTTATTTAAGAGGA-TAACTTTGATTCTAT
* * * * ** * * * * * *
2129261 AAAAAACGGTGGAAAAAAAAAGATTTTTTTGCGACCCCGAAGCAACAATGTCATATATCTTGATG
1 AAAAAATGGTGG-AAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG
* * * * * * * ** ** *
2129326 A-AAGGAATGTGTTT-TAGCTTCCCAAT-CTAGAAAAGAATGGAGACTATTATGAGAAACGAT-C
65 AGAA-GACTATGTTTAT-GGTGCCTAATCCT-GAAAAGAATGGAGATTAGTATGCTATTC-ATGT
2129387 TTGTCTTATTTAAG-GGATGAACTTTGATT-T-T
126 TTGTCTTATTTAAGAGGAT-AACTTTGATTCTAT
* * * * * * ** * * * *
2129418 AAGGAAAATCG-GGCAA-AAAAGATTTCCATGCAAAAGAAAATCATTATTATCATTTATCCTAAT
1 AA--AAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAAT
* * * * * ** * * * * *
2129481 GAGGAGAATTTGATTATAGTGCCTAATCAC--AAAATGGGTGAAGATCATTACTAG-AATCCATG
64 GAGAAGACTATGTTTATGGTGCCTAATC-CTGAAAA-GAATGGAGATTAGTA-T-GCTATTCATG
* ** * * *
2129543 TTTGTCTCA-TT-AGACACACAAACTTAGACTT-TAC
125 TTTGTCTTATTTAAGA-GGA-TAACTTTGA-TTCTAT
* * * * * *
2129577 AAAAATTAGTGGGAAA-AAAA-CCTTTCTTACGAAACCAAAGCATCAATATGATGCATCCTAATG
1 AAAAAATGGT-GGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG
* * *
2129640 AGAAGAC-ATGTTCATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATAAG-TATTCATGTTT
65 AGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTAT--GCTATTCATGTTT
* * *
2129703 GTCGTATTTAAGAGGCA-AACATTAATTCTAT
128 GTCTTATTTAAGAGG-ATAACTTTGATTCTAT
* ** * * * * ** * * *
2129734 CAAAAACAGTGGAAAGAAAAGCTTTTCTTGTGACACCGAAGCATTAAGGTCTTGTATCTTAGTGA
1 AAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA
* * * * ** ** ** *
2129799 -AGGGAATATGTTT-TGGCTTCCGAAT-CTAGAAAAGAATGGAGGCT-GTTATGAGAAACGATGC
66 GA-AGACTATGTTTATGG-TGCCTAATCCT-GAAAAGAATGGAGATTAG-TATGCTATTC-ATGT
2129860 TTGTCTTATTTAAG-GGATAAACTTTGATT-T-T
126 TTGTCTTATTTAAGAGGAT-AACTTTGATTCTAT
* * * * ** ** * * *
2129891 AAGGAAAACAGG-GAAAAGGAAA--TATTTCTATGCAAAAGAAAATTATCAGTATCATTTATCCG
1 AA--AAAA-TGGTGGAAAGAAAAGCT-TTTCT-TGCGAAACCAAAGCATCAATATCATGTATCCT
* * * ** * * * * *
2129953 AATTAGGAGAATGCGTTTA-GAGT-CTGTAA-CC-GCAAAATGAATGAAGATCA-T-TACTAGAA
61 AATGAGAAGACTATGTTTATG-GTGC-CTAATCCTG-AAAA-GAATGGAGATTAGTATGCT--AT
* * * * *
2130012 TCAATGTCTGTCTCATTT--GAGGCACGAACTTAGACTT-TAC
120 TC-ATGTTTGTCTTATTTAAGAGG-A-TAACTTTGA-TTCTAT
* * * *
2130052 CAAAATTGGTTGG-AAG-AAAGCCTTTT-TTGCGAAACCAAAGCATCGATATCGTGTATCCTAAT
1 AAAAAATGG-TGGAAAGAAAAG-CTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAAT
* ** * * *
2130114 GAGAAAACTATGTTTATGGTGCCTAATCCTTTAAAGAATGGGGATTAGTATGACTATCCTTGTTT
64 GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATG-CTATTCATGTTT
* * * * *
2130179 TTCGTATTTGAGA-GACAAACTTTGATTTTAT
128 GTCTTATTTAAGAGGA-TAACTTTGATTCTAT
* * * ** * * **
2130210 CAAAAATAGTGGAAATG-AAAGCTTTTCTTGCGACACTGAAGCATCAATGTCTTGTATCCTGGTG
1 AAAAAATGGTGGAAA-GAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG
* * * * * * ** * * * ** * * *
2130274 A-AGGGAATGTGTTT-TGGCTTCCCAGTCCAAAAAAGAATGGAAACTATTATGAGAAATGATGCT
65 AGA-AGACTATGTTTATGG-TGCCTAATCCTGAAAAGAATGGAGATTAGTATG-CTATTCATGTT
*
2130337 TGTATTATTTAAG-GGATGAACTTTGACTT-TA-
127 TGTCTTATTTAAGAGGAT-AACTTTGA-TTCTAT
* * * * * * * ** * * *
2130368 AGGAAAATAGG-GCAAAGGAAAG-ATTCCATGCAAAAGAAAATCATCAATATCATTTATTCTAAT
1 A-AAAAAT-GGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAAT
* * ** * ** * *
2130431 GAGGAGAATGCGTTTA-GAGTGCGTAA-CCACAAAATGAAT-GA-A--AATCATGACTAGAATCA
64 GAGAAGACTATGTTTATG-GTGCCTAATCCTGAAAA-GAATGGAGATTAGT-ATG-CT--ATTC-
* * * * * *
2130490 ATGTCTGTCTCATTT--GAGGCACGAACATAGACTT-TAC
122 ATGTTTGTCTTATTTAAGAGG-A-TAACTTTGA-TTCTAT
* * ** * * * *
2130527 CAAAATTCGCAGG-AAG-AAAGCCTTTCTTGCAAAACCAAAGCATCGATATCATGTATCATAATG
1 AAAAAAT-GGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG
* * * *
2130590 AGAAGACTATGTTTATGGTGCCTAATCCTTAAAGGAATCGG-GATTAGTATGACTTTTCTTGTTT
65 AGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAT-GGAGATTAGTATG-CTATTCATGTTT
* *
2130654 GTCGTATTTAAGA-GACAAACTTTGATTCTAT
128 GTCTTATTTAAGAGGA-TAACTTTGATTCTAT
* * * * * *
2130685 CAAAAATGGTGCAAAGAAAACCTTTTGTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGA
1 AAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA
* * * * * * * * * * *
2130750 GAGGAATGTGTTT-TGGCTTCCCAAT-CTAGAGAAGAATGG-GACT-GCAATGATAATCGATGCT
66 GAAGACTATGTTTATGG-TGCCTAATCCT-GAAAAGAATGGAGATTAG-TATGCTATTC-ATGTT
* *
2130811 TGTCTTATTTAAG-GGATGAGCTTTGATTTTA-
127 TGTCTTATTTAAGAGGAT-AACTTTGATTCTAT
* ** * *
2130842 AGAAAAATAGG-GCAAAGAAAA-CATTTT-TATGC-AAAGGAAAATCATCAATATCATTTATCCT
1 A-AAAAAT-GGTGGAAAGAAAAGC-TTTTCT-TGCGAAA-CCAAAGCATCAATATCATGTATCCT
* * * * * * *
2130903 AATGACG-AGAATGTGTTTATAGTGCCTTATCACAACTTAAATA-AA--GACCATTACTA-G--A
61 AATGA-GAAGACTATGTTTATGGTGCCTAAT--C--CTGAAA-AGAATGGA-GATTAGTATGCTA
* * * * * * * *
2130961 ATCTATGTTTCTCTCATTT--GATGCTCGAGCTTAGACTT-TAC
119 TTC-ATGTTTGTCTTATTTAAGAGGAT--AACTTTGA-TTCTAT
* * * * * * *
2131002 AAAAATTGGTGGGAA-AAAAGCCTTCCTTACGAGACCAAAGCATCAATATGATGTATCCTAATGA
1 AAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA
* * * * * * *
2131066 GAAGTCTATGCTTATGGTGCCTAATCTTGAAAGGAACGGTGATTAGTATGAGTATTCATGTTTGT
66 GAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATG-CTATTCATGTTTGT
* * *
2131131 CGTACTTAA-ATGATAAACTTTGATTCTAT
130 CTTATTTAAGAGGAT-AACTTTGATTCTAT
* * * * ** * **
2131160 CAAAAATGATGGAAAGGAATGCTTTTCTTATGACACCAAAGCATCAACGTCATGTATCCTAATGA
1 AAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA
* * * * * * ** * * * * * **
2131225 G-GGAATGTGTTT-TGGCTTCCCAA-CGT-TTAAGAATGGAGACTATTACGATAATCGATGCATG
66 GAAGACTATGTTTATGG-TGCCTAATCCTGAAAAGAATGGAGATTAGTATGCTATTC-ATGTTTG
*
2131286 TCTTATTT-AGGGGATGAACTTTGATTCTAT
129 TCTTATTTAAGAGGAT-AACTTTGATTCTAT
* * * * * ** * *
2131316 GGAAAACA-GG-GCAAAGAAAAGATTTTCCTAC-AAAAGAAAGTCATCAATATCATTTTTCCTAA
1 --AAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAG-CATCAATATCATGTATCCTAA
* * * * ** * ** * *
2131378 TGAGGAGAATGTGTTTATAGTGCCTAATCAC--AAAATGAATAAAAAACA-T-TACTAAAGTCAA
63 TGAGAAGACTATGTTTATGGTGCCTAATC-CTGAAAA-GAATGGAGATTAGTATGCT--ATTC-A
** * * * * *
2131439 TGTTTGTCGCATTT--GAGGCGTGAACCTAGACAT-TAC
123 TGTTTGTCTTATTTAAGAGG-AT-AACTTTGA-TTCTAT
* * * *
2131475 AAAAATTGG-GGAGAAGAAAA-CCTTTCTTACGAAACCAAAGCATCAATATGATGTATCCTAATG
1 AAAAAATGGTGGA-AAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG
* * * * *
2131538 AGAAGACTATGTTTATGGTGCCTAATCTTGAAAGGAACGGTGATTAGTATGAGTATTCATGTTTG
65 AGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATG-CTATTCATGTTTG
* * *
2131603 TCGTATTTAA-AAGATAAACTTTGATTCGAT
129 TCTTATTTAAGAGGAT-AACTTTGATTCTAT
* * * ** * ** * **
2131633 CAAAAATGATGGAAAGGAAAGCTTTTCTTATGACACCAAAGCATCAACGTCATATATCCTAACAA
1 AAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA
* * * * * ** * * * * * **
2131698 G-GGAATGTGTTT-TGGCTTCCTAA-CGT-TTAAGAATTGAGACTATTATGATAATCGATGCATG
66 GAAGACTATGTTTATGG-TGCCTAATCCTGAAAAGAATGGAGATTAGTATGCTATTC-ATGTTTG
* *
2131759 TCTTATTT-AGGGGAAGAACTTTGATTCTA-
129 TCTTATTTAAGAGG-ATAACTTTGATTCTAT
* * * ** * *
2131788 AGGAAAACA-GG-GCAAAGAAAAGATTTTCCTGC-AAAAGAAAGTCATCAATATCATTTTTCCTA
1 A--AAAA-ATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAG-CATCAATATCATGTATCCTA
* * * ** * ** * *
2131850 ATGA-AGAGAATGTGTTTATAGTGCCTAATCAC--AAAATGAATAAAAAACA-TA-ACTAAAGTC
62 ATGAGA-AGACTATGTTTATGGTGCCTAATC-CTGAAAA-GAATGGAGATTAGTATGCT--ATTC
** * * * * *
2131910 AATGTTTGTCGCATTT--GAGGCGTGAACCTAGACAT-TAC
122 -ATGTTTGTCTTATTTAAGAGG-AT-AACTTTGA-TTCTAT
* * * *
2131948 AAAAATTGG-GGAGAAGAAAA-CCTTTCTTACGAAACCAAAGCATCAATATGATGTATCCTAATG
1 AAAAAATGGTGGA-AAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG
* * * ** * *
2132011 AGAAGACTATGTTTATGGTGCATAATCTTGAAAGGAACAGTGATTAGTATGAGTATTCATGTTTG
65 AGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATG-CTATTCATGTTTG
* * *
2132076 TCGTATTTAA-AAGATAAACTTTGATTCGAT
129 TCTTATTTAAGAGGAT-AACTTTGATTCTAT
* * ** * ** * *
2132106 CAAAAATGATGGAAAGAAAAGCTTTTCTTATGACACCAAAGCATCAACGTCATATATCCTAACGA
1 AAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA
* * * * * ** * * * * * **
2132171 G-GGAATGTGTTT-TGGCTTCCTAA-CGT-TTAAGAATTGAGACTATTATGATAATCGATGCATG
66 GAAGACTATGTTTATGG-TGCCTAATCCTGAAAAGAATGGAGATTAGTATGCTATTC-ATGTTTG
* *
2132232 TCTTATTT-AGGGGAAGAACTTTGATTCTA-
129 TCTTATTTAAGAGG-ATAACTTTGATTCTAT
* * * * ** * *
2132261 AGGAAAACA-GG-GCAAAGAAAAGATTTTCCT-CCAAAAGAAAGTCATCAATATCATTTTTCCTA
1 A--AAAA-ATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAG-CATCAATATCATGTATCCTA
* * * ** * ** * *
2132323 ATGA-AGAGAATGTGTTTATAGTGCCTAATCAC--AAAATGAATAAAAAACA-TA-ACTAAAGTC
62 ATGAGA-AGACTATGTTTATGGTGCCTAATC-CTGAAAA-GAATGGAGATTAGTATGCT--ATTC
** * * * * *
2132383 AATGTTTGTCGCATTT--GAGGCGTGAACCTAGACAT-TAC
122 -ATGTTTGTCTTATTTAAGAGG-AT-AACTTTGA-TTCTAT
* * * *
2132421 AAAAATTGG-GGAGAAGAAAA-CCTTTCTTACGAAACCAAAGCATCAATATGATGTATCCTAATG
1 AAAAAATGGTGGA-AAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG
* * * ** * *
2132484 AGAAGACTATGTTTATGGTGCATAATCTTGAAAGGAACAGTGATTAGTATGAGTATTCATGTTTG
65 AGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATG-CTATTCATGTTTG
* * *
2132549 TCGTATTTAA-AAGATAAACTTTGATTCGAT
129 TCTTATTTAAGAGGAT-AACTTTGATTCTAT
* * ** * ** * *
2132579 CAAAAATGATGGAAAGAAAAGCTTTTCTTATGACACCAAAGCATCAACGTCATATATCCTAACGA
1 AAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA
* * * * *** ** * * * * **
2132644 G-GGAATGTGTTT-TGGCTTCCTAA--CTTTTAAGAATTAAGACTATTATGATAATCGATGCATG
66 GAAGACTATGTTTATGG-TGCCTAATCCTGAAAAGAATGGAGATTAGTATGCTATTC-ATGTTTG
* *
2132705 TCTTATTT-AGGGGAAGAACTTTGATTCTA-
129 TCTTATTTAAGAGG-ATAACTTTGATTCTAT
* * * ** * *
2132734 AGGAAAACA-GG-GCAAAGAAAAGATTTTCCTGC-AAAAGAAAGTCATCAATATCATTTTTCCTA
1 A--AAAA-ATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAG-CATCAATATCATGTATCCTA
* * * ** * ** * *
2132796 ATGA-AGAGAATGTGTTTATAGTGCCTAATCAC--AAAATGAATAAAAAACA-T-TACTAAAGTC
62 ATGAGA-AGACTATGTTTATGGTGCCTAATC-CTGAAAA-GAATGGAGATTAGTATGCT--ATTC
*** * * * * *
2132856 AATGTTTGTGGCATTT--GAGGCGTGAACCTAGACAT-TAC
122 -ATGTTTGTCTTATTTAAGAGG-AT-AACTTTGA-TTCTAT
* * * *
2132894 AAAAATTGG-GGAGAAGAAAA-CCTTTCTTACGAAACCAAAGCATCAATATGATGTATCCTAATG
1 AAAAAATGGTGGA-AAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG
* * * * *
2132957 AGAAGACTATGTTTATGGTGCCTAATCTTGGAAGGAACGGTGATTAGTATAAG-TATTCATGTTT
65 AGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTAT--GCTATTCATGTTT
* * *
2133021 GTCGTATTTAA-AAGATAAACTTTGATTCGAT
128 GTCTTATTTAAGAGGAT-AACTTTGATTCTAT
* ** * ** * ** *
2133052 CAAAAATAATGGAAAGGAAAGCTTTTCTTATGACACCAAAGCATCAACGTCATATATCCTAATGA
1 AAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA
* * * * * ** * * * * * **
2133117 G-GGAATGTGTTT-TGGCTTCCTAA-CGT-TTAAGAATTGAGACTATTATGATAATCGATGCATG
66 GAAGACTATGTTTATGG-TGCCTAATCCTGAAAAGAATGGAGATTAGTATGCTATTC-ATGTTTG
* *
2133178 TCTTATTT-AGGGGAAGAACTTTGATTCTA-
129 TCTTATTTAAGAGG-ATAACTTTGATTCTAT
* * * ** * *
2133207 AGGAAAACA-GG-GCAAAGAAAAGATTTTCCTGC-AAAAGAAAGTCATCAATATCATTTTTCCTA
1 A--AAAA-ATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAG-CATCAATATCATGTATCCTA
* * * * * * * *
2133269 ATGA-AGAGAATGTGTTTATAGTGCCTAAACAC--AAAATGAATAAAGAACATTACTA-G--AAT
62 ATGAGA-AGACTATGTTTATGGTGCCTAATC-CTGAAAA-GAAT---GGAGATTAGTATGCTATT
** * * * *
2133328 CAATGTTTGTCGCATTT--GAGGCATGAACCTAGACAT-TAC
121 C-ATGTTTGTCTTATTTAAGAGG-AT-AACTTTGA-TTCTAT
* * * * *
2133367 AAAAATTGGGGGGAAA-AAAA-CCTTTCTTACGAAACCAAAGCATCAATATGATGTATCCTAATG
1 AAAAAAT-GGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG
* * * * *
2133430 AGAATACTATGTTTATGGTGCCTAATCTTGAAAGGAACGGTGATTAGTATAAG-TATTCATGTTT
65 AGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTAT--GCTATTCATGTTT
* *
2133494 GTCGTATTTAA-AAGATAAACTTTGATTCTAT
128 GTCTTATTTAAGAGGAT-AACTTTGATTCTAT
* * * ** * * ** *
2133525 CAAAAATGATGGAAAGGAAAGCTTTTCTTATGACACCAAAGCATTAACGTCATGTATCCTAACGA
1 AAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA
* * * * * ** * * * * * * **
2133590 G-GGAATGTGTTT-TGGCTTCCTAA-CGT-TTAAGAATCGAGACTATTACGATAATTGATGCATG
66 GAAGACTATGTTTATGG-TGCCTAATCCTGAAAAGAATGGAGATTAGTATGCT-ATTCATGTTTG
*
2133651 TCTTATTT-AGGGGATGAACTTTGATTCTA-
129 TCTTATTTAAGAGGAT-AACTTTGATTCTAT
* * * ** *
2133680 AGGAAAACA-GG-GCAAAGAAAAGATTTTCCTGC-AAAAGAAAGTCATCAATATCAT-TTTCCTA
1 A--AAAA-ATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAG-CATCAATATCATGTATCCTA
* * * * * * * * * * *
2133741 ATGAGGATAATGTGTTTATAGTGCCTAATCACAAT-ATAAATAAAGAATATTACTA-G--AATCA
62 ATGAGAAGACTATGTTTATGGTGCCTAATC-C--TGA-AAAGAATGGAGATTAGTATGCTATTC-
** * * * *
2133802 ATGTTTGTCGCATTT--GAGGCATGAACCTAGACAT-TAC
122 ATGTTTGTCTTATTTAAGAGG-AT-AACTTTGA-TTCTAT
* * * * * * *
2133839 AAAAATTGGGGGGAAGAAAA-CCTTTCTTACAAAACCAAAGCATCAATATGATGTATCCTAATGA
1 AAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA
* * ** *
2133903 GAAGACTATGTTTATGGTGCCTAACCCTAAAAAGAACTGG-GATTAACATGAGTATTCATGTTTG
66 GAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAA-TGGAGATTAGTATG-CTATTCATGTTTG
** * * *
2133967 TCGAATTTAGGA-GACAAACTTTGAATCTAT
129 TCTTATTTAAGAGGA-TAACTTTGATTCTAT
* * * * *
2133997 CAAAAATGGTAGAAAGAAAAGACTTTT-TTACGACACCAATGCATCAA
1 AAAAAATGGTGGAAAGAAAAG-CTTTTCTTGCGAAACCAAAGCATCAA
2134044 CGTCACATAT
Statistics
Matches: 5292, Mismatches: 1764, Indels: 1151
0.64 0.21 0.14
Matches are distributed among these distances:
152 5 0.00
153 37 0.01
154 77 0.01
155 115 0.02
156 545 0.10
157 544 0.10
158 1988 0.38
159 1445 0.27
160 466 0.09
161 49 0.01
162 18 0.00
163 3 0.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (158 bp):
AAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA
GAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATGCTATTCATGTTTGTC
TTATTTAAGAGGATAACTTTGATTCTAT
Found at i:2136343 original size:476 final size:473
Alignment explanation
Indices: 2134866--2137143 Score: 2392
Period size: 476 Copynumber: 4.8 Consensus size: 473
2134856 TGGCAAGAAG
* *
2134866 AAAGCCTTTCTTGC-AAATCCAAACCATCAATATGATGTATCCTAAAGAGAAGACTATGTTTATG
1 AAAGCCTTTCTTGCGAAA-CCAAAGCATCAATATG-TGTATCCTAATGAGAAGACTATGTTTATG
* * * * *
2134930 GTGCCTAATCCTGAAAAGAA-CGATGATTAGCATGAGC-ATTCATGTTTGTCGAATTTAGGAGAC
64 GTGCCTAATCCTGAAAAGAATAG-GGATTAGTAT-AGCTATTCATGTTTGTCGTATTTAAGAGAC
* ** * * * * * *
2134993 AAACTTTAATTCTATCAAAAAATGTGGAAGGAAAAGATTTTTTTATGACATCAAAGCATCAACGT
127 AAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGT
* * * * * * * *
2135058 CACATATCTTGATGAA-GGAATGTGTTTTTGCTTTCAAATCTAGAAAAGAATGGAGATTGTTATG
192 CACGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATTTA-AAAA-AATGGAGACTGTTATG
* * *
2135122 AGAAACGATGCTTGTCTTATTTAAGGGATGAACTTTGGTTTTAAAGAAAATAGGGCAAAGGAAAG
255 AGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGCAAAGAAAAG
* * * * * *
2135187 ACCTTCCACGCAAAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTAGAGT
320 A-TTTTCATGC--AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAAAATGTGTTTATAGT
* * * * *
2135252 GCGTAATCATAAAATGAATGAAGATCATTACTAGAAT-GATTGTTTGTTTCATTTGA-AGCACGA
382 GCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA-TATTTGTCTCATTTGAGA-CACGA
* *
2135315 ACTTAGACTTTACCAAAATTGTCAGG--AAG
445 ACTTAGACTTTACGAAAATTGT--GGAAAAA
* * *
2135344 AAAGCCTTTCTTGCGAAACCAAAGCATCGATATCGTGTATCCGAATAAGAAGACTATGTTTATGG
1 AAAGCCTTTCTTGCGAAACCAAAGCATCAATAT-GTGTATCCTAATGAGAAGACTATGTTTATGG
* *
2135409 TGCCTAATCCT-TAAAGAAT-GGGAATTAGTAT-GACTATTCTTGTTTGTCGTATTTAAGAGACA
65 TGCCTAATCCTGAAAAGAATAGGG-ATTAGTATAG-CTATTCATGTTTGTCGTATTTAAGAGACA
* * * *
2135471 GACTTTGATTCTATCTAAAACGGTGGAAAGAAAAGCTTTTAC-TGTGACACCAAAGAATCAGTGT
128 AACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTT-CTTGTGACACCAAAGCATCAATGT
* * * *
2135535 CATGTATCCTAATGAGGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAAAATAGG-GACTGCTAC
192 CACGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAAT-TT-AAAAAAAT-GGAGACTGTTAT
*
2135599 GAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT-GAGCAAAATAGGGCAAAGAAA
254 GAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAG-AAAATAGGGCAAAGAAA
* ** *
2135663 AGA-TTTCTATACAATGGAAAATCATCAATATCATTTATCCTAATGA-CAAGAATGTGTTTATAG
318 AGATTTTC-ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAA-AATGTGTTTATAG
** ** * * * * *
2135726 TGCCTAATCACAACTTGAAT-AACGGCCATTACTAGAATCCATGTTTCTCCCTTTTGATG-CTCG
381 TGCCTAATCACAAAATGAATGAA-GATCATTACTAGAATCCATATTTGTCTCATTTGA-GACACG
* *
2135789 AACATAGACTTTACGAAAATTGGTGGGAAAA
444 AACTTAGACTTTACGAAAATT-GTGGAAAAA
* *
2135820 AAA-CCTTTCTTGC-ATGACCAAAGCATCAATATGATGCATCCTAATGAG-AGCACTATGTTTAT
1 AAAGCCTTTCTTGCGA-AACCAAAGCATCAATATG-TGTATCCTAATGAGAAG-ACTATGTTTAT
* *
2135882 GGTGCCTAATCCTGAAAAGAATAGGGATTAGTATAGCTATTCATGTTTGTTGTATTTAAGAGTCA
63 GGTGCCTAATCCTGAAAAGAATAGGGATTAGTATAGCTATTCATGTTTGTCGTATTTAAGAGACA
* * * *
2135947 AACTTTGATTTTATCAGAAACTGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATTAATGTC
128 AACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTC
* * * *
2136012 ACGTATCCTAATGAAGGGAATATGTTTTGGCTT-CCAATTGTTTAAAAAATCGAGACTGTTACGA
193 ACGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAA-T-TTAAAAAAATGGAGACTGTTATGA
** * *
2136076 GAATCGATGCAAGTATTATTT-AGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGA
256 GAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGCAAAGAAAAGA
* **
2136140 TTTTCATGCAAAAGAAAATCATCAATATCATTTTTTATAATGAGGAAAATGTGTTTATAGTGCCT
321 TTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAAAATGTGTTTATAGTGCCT
* * * * *
2136205 AAACACGAAATGAATGAAGATAATTACTAGAATCCATATTTGTCTCATTTGAGACACGAGCGTAG
386 AATCACAAAATGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTTGAGACACGAACTTAG
*
2136270 ACTTTACAAAAATTTGTGGAAAAAA
451 ACTTTACGAAAA-TTGTGG-AAAAA
* ** * * * * *
2136295 AAAGCCTTTCTTACGAAACCATTGCGTCAATATCGTGTATCTTAATGAGAAAATTAAGTTTATGG
1 AAAGCCTTTCTTGCGAAACCAAAGCATCAATAT-GTGTATCCTAATGAGAAGACTATGTTTATGG
* * * * *
2136360 CGCCTAATCCTTAAAAGAATGGGGATTAGTAT-GACTATTCATGTTTGTCTTATATAAGAGACAA
65 TGCCTAATCCTGAAAAGAATAGGGATTAGTATAG-CTATTCATGTTTGTCGTATTTAAGAGACAA
* * * *
2136424 ATTTTGATTCTATCAAAAACGATTGAAA-AAAAGCTTTTC-T-TG-CA--AATGC--C-ATG---
129 ACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCA
* * * * * *
2136477 C--ATCTTAATTAAGGGAATATGTTTTTGG-TTCCCAATTGAAAAGAATGGAGACTGTTATGAAA
194 CGTATCCTAATGAAGGGAATGTG-TTTTGGCTTCCCAATTTAAAAAAATGGAGACTGTTATGAGA
* * * *
2136539 ATCAATACTTTTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGCAAA-AAAGAGAA
258 ATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGCAAAGAAA-AGAT
* * *
2136603 TTTCATGCAAAAAAAAATCATCAATATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTGCCTA
322 TTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAAAATGTGTTTATAGTGCCTA
* * *
2136668 ATCACAAAATGAATGAAGATCATTACTAGAATCC--A----TCTCATTTAAGGCATGAACTTAGA
387 ATCACAAAATGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTTGAGACACGAACTTAGA
* *
2136727 CTTTATGAAAATTG-GCGAGAAA
452 CTTTACGAAAATTGTG-GAAAAA
* * * *
2136749 AAATCCTTTCTTGCGAAACCAAAGCATTAATATAATGTATCCTATTGAGAAGACTATGTTTATGG
1 AAAGCCTTTCTTGCGAAACCAAAGCATCAATAT-GTGTATCCTAATGAGAAGACTATGTTTATGG
* * * * * *
2136814 TACCTAATCCTAAAAAGAACA-GGATTAGTA-AG-TGTTCATGTTTGTCATTTTTAAGAGACAAA
65 TGCCTAATCCTGAAAAGAATAGGGATTAGTATAGCTATTCATGTTTGTCGTATTTAAGAGACAAA
* * ** *
2136876 CTTTGATTCTATAAAAAACGGTGGAAAGAAAAGCTTTACTTGCAACACCAAAGCATCAATGTCAT
130 CTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCAC
* * *
2136941 GTATCCTAATGAAGGAAATGTGTTTTGGCTTCCCAAACTTCAAAAAAATTGAGACTGTTATGAGA
195 GTATCCTAATGAAGGGAATGTGTTTTGGCTTCCC-AA-TTTAAAAAAATGGAGACTGTTATGAGA
* * * *
2137006 ATCGATGCTTATCTTATTTAAGGGACGAACTTTGATTTT-AAGAAAATGGGGCATAGAAAAGATT
258 ATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGCAAAGAAAAGATT
* * * * * *
2137070 TTTATGTAAATGAAAATTACCAATATCATTTATCCTAATGAGGAGAAA-GTGTTTATAGTACCTA
323 TTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGA-AAATGTGTTTATAGTGCCTA
*
2137134 ATTACAAAAT
387 ATCACAAAAT
2137144 AAATAAGGTG
Statistics
Matches: 1503, Mismatches: 230, Indels: 146
0.80 0.12 0.08
Matches are distributed among these distances:
451 49 0.03
452 10 0.01
453 11 0.01
454 73 0.05
455 6 0.00
456 28 0.02
457 4 0.00
459 1 0.00
460 4 0.00
461 36 0.02
462 149 0.10
463 10 0.01
464 7 0.00
465 21 0.01
466 81 0.05
467 66 0.04
470 4 0.00
472 2 0.00
473 3 0.00
474 161 0.11
475 237 0.16
476 264 0.18
477 110 0.07
478 154 0.10
479 11 0.01
480 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (473 bp):
AAAGCCTTTCTTGCGAAACCAAAGCATCAATATGTGTATCCTAATGAGAAGACTATGTTTATGGT
GCCTAATCCTGAAAAGAATAGGGATTAGTATAGCTATTCATGTTTGTCGTATTTAAGAGACAAAC
TTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCACG
TATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATTTAAAAAAATGGAGACTGTTATGAGAATC
GATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGCAAAGAAAAGATTTTC
ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAAAATGTGTTTATAGTGCCTAATCA
CAAAATGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTTGAGACACGAACTTAGACTTT
ACGAAAATTGTGGAAAAA
Found at i:2150020 original size:13 final size:13
Alignment explanation
Indices: 2149991--2150029 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
2149981 TCTTCCGTAA
2149991 AAAAAAAACAAAAAC
1 AAAAAAAAC--AAAC
*
2150006 AATAAAAACAAAC
1 AAAAAAAACAAAC
2150019 AAAAAAAACAA
1 AAAAAAAACAA
2150030 TAACAACAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
13 14 0.64
15 8 0.36
ACGTcount: A:0.85, C:0.13, G:0.00, T:0.03
Consensus pattern (13 bp):
AAAAAAAACAAAC
Found at i:2150028 original size:22 final size:22
Alignment explanation
Indices: 2149988--2150044 Score: 75
Period size: 22 Copynumber: 2.7 Consensus size: 22
2149978 GCGTCTTCCG
*
2149988 TAAAAA-AAA-AACAAAAACAA
1 TAAAAACAAACAAAAAAAACAA
2150008 TAAAAACAAACAAAAAAAACAA
1 TAAAAACAAACAAAAAAAACAA
*
2150030 TAACAAC-AACAAAAA
1 TAAAAACAAACAAAAA
2150045 GGGTCCGGAT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
20 6 0.18
21 11 0.33
22 16 0.48
ACGTcount: A:0.81, C:0.14, G:0.00, T:0.05
Consensus pattern (22 bp):
TAAAAACAAACAAAAAAAACAA
Found at i:2150034 original size:19 final size:19
Alignment explanation
Indices: 2149990--2150044 Score: 58
Period size: 19 Copynumber: 2.9 Consensus size: 19
2149980 GTCTTCCGTA
* * *
2149990 AAAAAAAAACAAAAACAAT
1 AAAAACAAACAAAAAAAAC
2150009 AAAAACAAACAAAAAAAAC
1 AAAAACAAACAAAAAAAAC
*
2150028 AATAAC-AACAACAAAAA
1 AAAAACAAACAA-AAAAA
2150045 GGGTCCGGAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
18 5 0.16
19 26 0.84
ACGTcount: A:0.82, C:0.15, G:0.00, T:0.04
Consensus pattern (19 bp):
AAAAACAAACAAAAAAAAC
Found at i:2150037 original size:9 final size:9
Alignment explanation
Indices: 2149991--2150038 Score: 51
Period size: 9 Copynumber: 5.2 Consensus size: 9
2149981 TCTTCCGTAA
*
2149991 AAAAAAAAC
1 AAAAACAAC
*
2150000 AAAAACAAT
1 AAAAACAAC
2150009 AAAAACAAAC
1 AAAAAC-AAC
*
2150019 AAAAAAAAC
1 AAAAACAAC
*
2150028 AATAACAAC
1 AAAAACAAC
2150037 AA
1 AA
2150039 CAAAAAGGGT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
9 25 0.78
10 7 0.22
ACGTcount: A:0.81, C:0.15, G:0.00, T:0.04
Consensus pattern (9 bp):
AAAAACAAC
Found at i:2151519 original size:34 final size:34
Alignment explanation
Indices: 2151476--2151699 Score: 243
Period size: 34 Copynumber: 6.8 Consensus size: 34
2151466 ATTCCTCACC
2151476 CTTTT-AAAGCCCACAACTCCGTGGCACCTTTTT
1 CTTTTCAAAGCCCACAACTCCGTGGCACCTTTTT
* * *
2151509 CTTTTCAAAGCCCACAACTCCATGGTAGCTTTTT
1 CTTTTCAAAGCCCACAACTCCGTGGCACCTTTTT
*
2151543 CTTTTCAAAGCCCATAACTCCGTGGCACCTTTTT
1 CTTTTCAAAGCCCACAACTCCGTGGCACCTTTTT
* * *
2151577 CTTTTCAAAGCCTACAACTCTGTGACACCTTTTT
1 CTTTTCAAAGCCCACAACTCCGTGGCACCTTTTT
* ** *
2151611 CTTTTCAAAGTCCGTAACTTCGTGGCACC-----
1 CTTTTCAAAGCCCACAACTCCGTGGCACCTTTTT
*
2151640 CTTTT--AAGCCCACAACTCTGTGGCACTCTTTTT
1 CTTTTCAAAGCCCACAACTCCGTGGCAC-CTTTTT
*
2151673 CCTTTT--AAGCCCACAACTCCATGGCAC
1 -CTTTTCAAAGCCCACAACTCCGTGGCAC
2151700 TCTTCTTCCT
Statistics
Matches: 158, Mismatches: 25, Indels: 15
0.80 0.13 0.08
Matches are distributed among these distances:
27 16 0.10
28 1 0.01
29 5 0.03
33 5 0.03
34 131 0.83
ACGTcount: A:0.22, C:0.32, G:0.12, T:0.34
Consensus pattern (34 bp):
CTTTTCAAAGCCCACAACTCCGTGGCACCTTTTT
Found at i:2151700 original size:34 final size:34
Alignment explanation
Indices: 2151475--2151783 Score: 212
Period size: 34 Copynumber: 9.5 Consensus size: 34
2151465 CATTCCTCAC
2151475 CCTTTTAAAGCCCACAACTCCGTGGCAC-CTTTTT
1 CCTTTT-AAGCCCACAACTCCGTGGCACTCTTTTT
* * *
2151509 -CTTTTCAAAGCCCACAACTCCATGGTA-GCTTTTT
1 CCTTTT--AAGCCCACAACTCCGTGGCACTCTTTTT
*
2151543 -CTTTTCAAAGCCCATAACTCCGTGGCAC-CTTTTT
1 CCTTTT--AAGCCCACAACTCCGTGGCACTCTTTTT
* * *
2151577 -CTTTTCAAAGCCTACAACTCTGTGACAC-CTTTTT
1 CCTTTT--AAGCCCACAACTCCGTGGCACTCTTTTT
* ** *
2151611 -CTTTTCAAAGTCCGTAACTTCGTGGCA--C-----
1 CCTTTT--AAGCCCACAACTCCGTGGCACTCTTTTT
*
2151639 CCTTTTAAGCCCACAACTCTGTGGCACTCTTTTT
1 CCTTTTAAGCCCACAACTCCGTGGCACTCTTTTT
* *
2151673 CCTTTTAAGCCCACAACTCCATGGCACTCTTCTT
1 CCTTTTAAGCCCACAACTCCGTGGCACTCTTTTT
* * *
2151707 CCTTTTAAGTCCATAACTTCGTGGCA-------T
1 CCTTTTAAGCCCACAACTCCGTGGCACTCTTTTT
*
2151734 CGTTTTAAGCCCACAACTCCGTGGCACTCTTTTT
1 CCTTTTAAGCCCACAACTCCGTGGCACTCTTTTT
*
2151768 CCTTTTAAGCCTACAA
1 CCTTTTAAGCCCACAA
2151784 GTTAGTGGCA
Statistics
Matches: 223, Mismatches: 34, Indels: 36
0.76 0.12 0.12
Matches are distributed among these distances:
27 38 0.17
29 6 0.03
33 6 0.03
34 173 0.78
ACGTcount: A:0.21, C:0.32, G:0.12, T:0.35
Consensus pattern (34 bp):
CCTTTTAAGCCCACAACTCCGTGGCACTCTTTTT
Found at i:2151766 original size:27 final size:26
Alignment explanation
Indices: 2151708--2151766 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
2151698 ACTCTTCTTC
* * *
2151708 CTTTTAAGTCCATAACTTCGTGGCAT
1 CTTTTAAGCCCACAACTCCGTGGCAT
2151734 CGTTTTAAGCCCACAACTCCGTGGCACT
1 C-TTTTAAGCCCACAACTCCGTGGCA-T
2151762 CTTTT
1 CTTTT
2151767 TCCTTTTAAG
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 1 0.04
27 25 0.89
28 2 0.07
ACGTcount: A:0.20, C:0.29, G:0.15, T:0.36
Consensus pattern (26 bp):
CTTTTAAGCCCACAACTCCGTGGCAT
Found at i:2151792 original size:34 final size:34
Alignment explanation
Indices: 2151736--2151800 Score: 85
Period size: 34 Copynumber: 1.9 Consensus size: 34
2151726 CGTGGCATCG
* *
2151736 TTTTAAGCCCACAACTCCGTGGCACTCTTTTTCC
1 TTTTAAGCCCACAACTCAGTGGCACCCTTTTTCC
* * *
2151770 TTTTAAGCCTACAAGTTAGTGGCACCCTTTT
1 TTTTAAGCCCACAACTCAGTGGCACCCTTTT
2151801 CAAAAGCCCA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 26 1.00
ACGTcount: A:0.20, C:0.29, G:0.14, T:0.37
Consensus pattern (34 bp):
TTTTAAGCCCACAACTCAGTGGCACCCTTTTTCC
Found at i:2151792 original size:61 final size:61
Alignment explanation
Indices: 2151675--2151793 Score: 177
Period size: 61 Copynumber: 2.0 Consensus size: 61
2151665 CTCTTTTTCC
* *
2151675 TTTTAAGCCCACAACTCCATGGCACTCTTCTTCCTTTTAAGTCCATAACTTCGTGGCATCG
1 TTTTAAGCCCACAACTCCATGGCACTCTTCTTCCTTTTAAGTCCACAACTTAGTGGCATCG
* * *
2151736 TTTTAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTAAG-CCTACAAGTTAGTGGCA
1 TTTTAAGCCCACAACTCCATGGCACTCTTCTTCCTTTTAAGTCC-ACAACTTAGTGGCA
2151794 CCCTTTTCAA
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
60 2 0.04
61 50 0.96
ACGTcount: A:0.22, C:0.29, G:0.14, T:0.34
Consensus pattern (61 bp):
TTTTAAGCCCACAACTCCATGGCACTCTTCTTCCTTTTAAGTCCACAACTTAGTGGCATCG
Found at i:2151793 original size:95 final size:95
Alignment explanation
Indices: 2151550--2151801 Score: 318
Period size: 95 Copynumber: 2.7 Consensus size: 95
2151540 TTTCTTTTCA
* * *
2151550 AAGCCCATAACTCCGTGGCAC-CTTTTT-CTTTTCAAAGCCTACAACTCT-GTGACACCTTTTTC
1 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTTT--AAGCCTACAACTCTAGTGGCACCTTTTCC
*
2151612 TTTTCAAAGTCCGTAACTTCGTGGCACCCTTTT
64 TTTT-AAAGTCCATAACTTCGTGGCACCCTTTT
* * *
2151645 AAGCCCACAACTCTGTGGCACTCTTTTTCCTTTTAAGCCCACAACTCCA-TGGCACTCTTCTTCC
1 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGCCTACAACTCTAGTGGCAC-CTT-TTCC
* *
2151709 TTTT-AAGTCCATAACTTCGTGGCATCGTTTT
64 TTTTAAAGTCCATAACTTCGTGGCACCCTTTT
*
2151740 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGCCTACAAGT-TAGTGGCACCCTTTTC
1 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGCCTACAACTCTAGTGGCA-CCTTTTC
2151802 AAAAGCCCAT
Statistics
Matches: 137, Mismatches: 13, Indels: 15
0.83 0.08 0.09
Matches are distributed among these distances:
94 4 0.03
95 111 0.81
96 10 0.07
97 12 0.09
ACGTcount: A:0.21, C:0.31, G:0.13, T:0.35
Consensus pattern (95 bp):
AAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGCCTACAACTCTAGTGGCACCTTTTCCTT
TTAAAGTCCATAACTTCGTGGCACCCTTTT
Found at i:2151881 original size:30 final size:28
Alignment explanation
Indices: 2151774--2151868 Score: 136
Period size: 28 Copynumber: 3.3 Consensus size: 28
2151764 TTTTCCTTTT
* *
2151774 AAGCCTACAAGTTAGTGGCACCCTTTTCAA
1 AAGCCCACAAGTTAGTGGCAACC--TTCAA
* *
2151804 AAGCCCATAAGTCAGTGGCAACCTTCAA
1 AAGCCCACAAGTTAGTGGCAACCTTCAA
2151832 AAGCCCACAAGTTAGTGGCAACCTTCAA
1 AAGCCCACAAGTTAGTGGCAACCTTCAA
2151860 AAGCCCACA
1 AAGCCCACA
2151869 CAAGTTGGTG
Statistics
Matches: 59, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
28 40 0.68
30 19 0.32
ACGTcount: A:0.35, C:0.29, G:0.17, T:0.19
Consensus pattern (28 bp):
AAGCCCACAAGTTAGTGGCAACCTTCAA
Found at i:2151961 original size:49 final size:49
Alignment explanation
Indices: 2151885--2152617 Score: 630
Period size: 52 Copynumber: 14.8 Consensus size: 49
2151875 GGTGGCATCT
* * * * *
2151885 TCTTCTAAGTCCAATATCGCTGTCCTTGAATTAGCATATTAGCACCTTTA
1 TCTT-TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTA
* ** *
2151935 TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCATATTCA
1 TCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTA
* * * * * *
2151984 TCTTTAAGTCTAATATCGTTGGCTTTGAATCAGCATATTGGCATCTTTAACA
1 TCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTT---A
* * *
2152036 TTCCTTAA-TCCAATGTCGTTGGCCTTGAATCAGCACATTGGCATTCTTCTCA
1 -TCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-CCTT-T-A
* * * * * * * *
2152088 TCTTCAAGTCTAATGTCGTTGACCGTGAATCAGTACATTGACATTCTTTACA
1 TCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-CCTTT--A
* * * * * *
2152140 TCTTTAAGCCCAATATCACTGGTCTTGAATCAGCATATTGGCACC-TTG
1 TCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTA
* *
2152188 TCTCTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGG---C---A
1 TCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTA
* * *
2152231 ----TAAG-CCTAATATCGCTGGCCTTGAATCAGCATATTGGCACC-TTG
1 TCTTTAAGTCC-AATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTA
* *
2152275 TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCA
1 TCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC-TT-T-A
* * *
2152327 TCTTTAAGTCCAATGTCGCTAGCCTTGAATCAGTACATTGGCACCTTCA
1 TCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTA
* * *
2152376 TCTTTAAGTCCAATGTCGCTAGCCTTGAATCAGTACATTGGCACCTTCA
1 TCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTA
* * *
2152425 TCTTTAAGTCCAATATCGCTGGCCTTGAATCAACACATTGGCACCTTAACCA
1 TCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTT---TA
* * * *
2152477 TCTTTAAGACCAATGTCGCTAGCCTTGAATCAGCATATTGGCACCTTCA
1 TCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTA
* * * * *
2152526 TCTTTAAGTCCAATATTGTTGGCCTTGAATCAGCATATTGGCATCTTTA
1 TCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTA
* * * *
2152575 ACATTCCTAAGCCCAATGTTGCTGGCCATGAATCAGCACATTG
1 TC-TT--TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTG
2152618 TCATTCTTCG
Statistics
Matches: 572, Mismatches: 82, Indels: 56
0.81 0.12 0.08
Matches are distributed among these distances:
38 2 0.00
39 32 0.06
42 1 0.00
45 1 0.00
48 72 0.13
49 216 0.38
50 9 0.02
51 10 0.02
52 218 0.38
53 10 0.02
54 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.33
Consensus pattern (49 bp):
TCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTA
Found at i:2152153 original size:104 final size:101
Alignment explanation
Indices: 2151934--2152467 Score: 295
Period size: 87 Copynumber: 5.4 Consensus size: 101
2151924 TAGCACCTTT
*
2151934 ATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCATATTCATCTTTAAGTCTAATA
1 ATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCATATTCATCTTCAAGTCTAATA
* ** * *
2151999 TCGTTGGCTTTGAATCAGCATATTGGCATCTTTAAC
66 TCGTTGACCGTGAATCAGCACATTGACATCTTTAAC
* * * *
2152035 ATTCCTTAA-TCCAATGTCGTTGGCCTTGAATCAGCACATTGGCATTCTTCTCATCTTCAAGTCT
1 A-TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-T-AT-TCATCTTCAAGTCT
* *
2152099 AATGTCGTTGACCGTGAATCAGTACATTGACATTCTTT-AC
62 AATATCGTTGACCGTGAATCAGCACATTGACA-TCTTTAAC
* * * * * ** * * *
2152139 ATCTTTAAGCCCAATATCACTGGTCTTGAATCAGCATATTGGCACCTT-GTC-TCTAAGACCAAT
1 ATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCATATTCATCTTC-AAGTCTAAT
* * * * *
2152202 GTCGCTGGCCTTGAATCAGCACATTG---------GC
65 ATCGTTGACCGTGAATCAGCACATTGACATCTTTAAC
* * ** * * * *
2152230 A----TAAG-CCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-GTCTTTAAGACCAAT
1 ATCTTTAAGACC-AATGTCGCTGGCCTTGAATCAGCACATTGGCATATTCATCTTCAAGTCTAAT
* * * * * * * **
2152289 GTCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTC
65 ATCGTTGACCGTGAATCAGCACATTGACATCTTTAAC
* * * ** * * *
2152326 ATCTTTAAGTCCAATGTCGCTAGCCTTGAATCAGTACATTGGCACCTTCATCTTTAAGTCCAATG
1 ATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCATATTCATCTTCAAGTCTAATA
* * * * *
2152391 TCGCT-AGCCTTGAATCAGTACATTGGCA-CCTT--C
66 TCGTTGA-CCGTGAATCAGCACATTGACATCTTTAAC
* * *
2152424 ATCTTTAAGTCCAATATCGCTGGCCTTGAATCAACACATTGGCA
1 ATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
2152468 CCTTAACCAT
Statistics
Matches: 360, Mismatches: 48, Indels: 53
0.78 0.10 0.11
Matches are distributed among these distances:
86 2 0.01
87 75 0.21
88 1 0.00
91 2 0.01
96 2 0.01
98 41 0.11
99 2 0.01
100 70 0.19
101 75 0.21
102 8 0.02
103 7 0.02
104 70 0.19
105 5 0.01
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.33
Consensus pattern (101 bp):
ATCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCATATTCATCTTCAAGTCTAATA
TCGTTGACCGTGAATCAGCACATTGACATCTTTAAC
Found at i:2152290 original size:87 final size:87
Alignment explanation
Indices: 2152144--2152317 Score: 303
Period size: 87 Copynumber: 2.0 Consensus size: 87
2152134 TTTACATCTT
*
2152144 TAAGCCCAATATCACTGGTCTTGAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTCGCTG
1 TAAGCCCAATATCACTGGCCTTGAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTCGCTG
2152209 GCCTTGAATCAGCACATTGGCA
66 GCCTTGAATCAGCACATTGGCA
* * *
2152231 TAAGCCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTG
1 TAAGCCCAATATCACTGGCCTTGAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTCGCTG
*
2152296 GCCTTGAATCAGCATATTGGCA
66 GCCTTGAATCAGCACATTGGCA
2152318 CCTTTGTCAT
Statistics
Matches: 82, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
87 82 1.00
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (87 bp):
TAAGCCCAATATCACTGGCCTTGAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTCGCTG
GCCTTGAATCAGCACATTGGCA
Found at i:2152416 original size:101 final size:98
Alignment explanation
Indices: 2152238--2152568 Score: 484
Period size: 101 Copynumber: 3.3 Consensus size: 98
2152228 GCATAAGCCT
* * *
2152238 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-GTCTTTAAGACCAATGTCGCTGGCCTTG
1 AATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCAATGTCGCTAGCCTTG
2152302 AATCAGCATATTGGCACCTTTGTCATCTTTAAGTCC
66 AATCAGCATATTGGCACC--T-TCATCTTTAAGTCC
* * * *
2152338 AATGTCGCTAGCCTTGAATCAGTACATTGGCACCTTCATCTTTAAGTCCAATGTCGCTAGCCTTG
1 AATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCAATGTCGCTAGCCTTG
* *
2152403 AATCAGTACATTGGCACCTTCATCTTTAAGTCC
66 AATCAGCATATTGGCACCTTCATCTTTAAGTCC
*
2152436 AATATCGCTGGCCTTGAATCAACACATTGGCACCTTAACCATCTTTAAGACCAATGTCGCTAGCC
1 AATATCGCTGGCCTTGAATCAGCACATTGGCACCTT---CATCTTTAAGACCAATGTCGCTAGCC
2152501 TTGAATCAGCATATTGGCACCTTCATCTTTAAGTCC
63 TTGAATCAGCATATTGGCACCTTCATCTTTAAGTCC
* * *
2152537 AATATTGTTGGCCTTGAATCAGCATATTGGCA
1 AATATCGCTGGCCTTGAATCAGCACATTGGCA
2152569 TCTTTAACAT
Statistics
Matches: 207, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
98 46 0.22
99 1 0.00
100 32 0.15
101 128 0.62
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.32
Consensus pattern (98 bp):
AATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCAATGTCGCTAGCCTTG
AATCAGCATATTGGCACCTTCATCTTTAAGTCC
Found at i:2152517 original size:150 final size:149
Alignment explanation
Indices: 2152238--2152568 Score: 500
Period size: 150 Copynumber: 2.2 Consensus size: 149
2152228 GCATAAGCCT
* *
2152238 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGA
1 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTATCTTTAAGACCAATATCGCTGGCCTTGA
* * *** * *
2152303 ATCAGCATATTGGCACCTTTGTCATCTTTAAGTCCAATGTCGCTAGCCTTGAATCAGTACATTGG
66 ATCAACACATTGGCACCTTAACCATCTTTAAGACCAATGTCGCTAGCCTTGAATCAGCACATTGG
2152368 CACCTTCATCTTTAAGTCC
131 CACCTTCATCTTTAAGTCC
* * * * *
2152387 AATGTCGCTAGCCTTGAATCAGTACATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTG
1 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-ATCTTTAAGACCAATATCGCTGGCCTTG
*
2152452 AATCAACACATTGGCACCTTAACCATCTTTAAGACCAATGTCGCTAGCCTTGAATCAGCATATTG
65 AATCAACACATTGGCACCTTAACCATCTTTAAGACCAATGTCGCTAGCCTTGAATCAGCACATTG
2152517 GCACCTTCATCTTTAAGTCC
130 GCACCTTCATCTTTAAGTCC
* *
2152537 AATATTGTTGGCCTTGAATCAGCATATTGGCA
1 AATATCGCTGGCCTTGAATCAGCATATTGGCA
2152569 TCTTTAACAT
Statistics
Matches: 160, Mismatches: 21, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
149 32 0.20
150 128 0.80
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.32
Consensus pattern (149 bp):
AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTATCTTTAAGACCAATATCGCTGGCCTTGA
ATCAACACATTGGCACCTTAACCATCTTTAAGACCAATGTCGCTAGCCTTGAATCAGCACATTGG
CACCTTCATCTTTAAGTCC
Found at i:2152591 original size:101 final size:98
Alignment explanation
Indices: 2152238--2152617 Score: 467
Period size: 101 Copynumber: 3.8 Consensus size: 98
2152228 GCATAAGCCT
* *
2152238 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGT--CTTTAAGACCAATGTCGCTGGCCTT
1 AATATCGCTGGCCTTGAATCAGCACATTGGCACCTT-TAACTTTAAGACCAATGTCGCTAGCCTT
*
2152301 GAATCAGCATATTGGCACCTTTGTCATCTTTAAGTCC
65 GAATCAGCACATTGGCACC--T-TCATCTTTAAGTCC
* * * * * *
2152338 AATGTCGCTAGCCTTGAATCAGTACATTGGCACCTTCATCTTTAAGTCCAATGTCGCTAGCCTTG
1 AATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTAACTTTAAGACCAATGTCGCTAGCCTTG
*
2152403 AATCAGTACATTGGCACCTTCATCTTTAAGTCC
66 AATCAGCACATTGGCACCTTCATCTTTAAGTCC
* *
2152436 AATATCGCTGGCCTTGAATCAACACATTGGCACCTTAACCATCTTTAAGACCAATGTCGCTAGCC
1 AATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTA--A-CTTTAAGACCAATGTCGCTAGCC
*
2152501 TTGAATCAGCATATTGGCACCTTCATCTTTAAGTCC
63 TTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
* * * * * * *
2152537 AATATTGTTGGCCTTGAATCAGCATATTGGCATCTTTAACATTCCTAAGCCCAATGTTGCTGGCC
1 AATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAC-TT--TAAGACCAATGTCGCTAGCC
*
2152602 ATGAATCAGCACATTG
63 TTGAATCAGCACATTG
2152618 TCATTCTTCG
Statistics
Matches: 243, Mismatches: 29, Indels: 15
0.85 0.10 0.05
Matches are distributed among these distances:
98 48 0.20
99 4 0.02
100 32 0.13
101 159 0.65
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.32
Consensus pattern (98 bp):
AATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTAACTTTAAGACCAATGTCGCTAGCCTTG
AATCAGCACATTGGCACCTTCATCTTTAAGTCC
Found at i:2155291 original size:13 final size:13
Alignment explanation
Indices: 2155273--2155300 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
2155263 CATTACTCAA
2155273 TGTATCGATACAT
1 TGTATCGATACAT
2155286 TGTATCGATACAT
1 TGTATCGATACAT
2155299 TG
1 TG
2155301 ATCTTCGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2159284 original size:425 final size:432
Alignment explanation
Indices: 2158454--2159299 Score: 1030
Period size: 425 Copynumber: 2.0 Consensus size: 432
2158444 ACGATAAAGG
* * * *
2158454 GAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGGGACTATTACGGGAATCGATGCTTGTCTT
1 GAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATAGAGACTATTACGAGAAACGATGCTTGTCTT
* ** * * *
2158519 ATTTAAGTGATGAACTTTGATTTTAAGGAAAATAAGGTGAAGAAAAGGCTTCCATGCAAAAGAAA
66 ATTTAAGTAATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGACTTCCAAGCAAAAAAAA
* * * * *
2158584 ATCACCAATATCCTTTATCCTAATGTGGAGAATGTGTTATAGTGCTTAATCACAAAATGAATGAA
131 ATCACCAATATCATTTATCCTAATGTAGAGAATATGTTATAGTACCTAATCACAAAATGAAT-AA
* *
2158649 GATCATTACTAAAATCCTTATTTGTCTCATTTAAGATACGAACTTAGATTTTACCAAAATTGGTG
195 GA-CATTACTAAAAT-CTTA--T-TCTCATTTAAGACACGAACTTAGACTTTACCAAAATTGGTG
* * * * *
2158714 GGAAAAAAACCTTTCATACGAAACCAAAGCATCAATATGATATATCCTAATGAGAAGACAATGTT
255 GGAAAAAAACCTTTCATACAAAACCAAAGCATCAATATGATACAACCTAAAGAGAAGACAATGTC
* ** * *
2158779 TATGGTGCCTAATCCTAAAAACAATGGGGATTAGTATGAGTATTCATGCTTGTCGTATTTAAGAG
320 TATAGCCCCTAATCCTAAAAACAATGGGGATTAGTATGAGTATTCAAGCTTGTCGTATTTAAAAG
2158844 ACAAACTTTGATTCTATCAAAAACGGTGGAAAGTAAAGCTTTTCTTGC
385 ACAAACTTTGATTCTATCAAAAACGGTGGAAAGTAAAGCTTTTCTTGC
* *
2158892 GAATGTGTTTTGGCTTCCCAATCTTGAAGAGAATAGAGACTATTATGAGAAACGATGCTTGTCTT
1 GAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATAGAGACTATTACGAGAAACGATGCTTGTCTT
* * **
2158957 TTTTATAG-AATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTGAAGCAAAAAAA
66 ATTTA-AGTAATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGACTTCCAAGC-AAAAAA
* * *
2159021 AAATCATCAATATCATTTATCCTAATG-AGACGAATATGTTTATAGTACCTAATCAC-AAATTAC
129 AAATCACCAATATCATTTATCCTAATGTAGA-GAATATG-TTATAGTACCTAATCACAAAATGAA
* * * * *
2159084 T-AGA-A-T-C-CAAGT-TTA-TCTCATTTGAGGCACGAACTTAGACTTTA-CAAAATTGGTGGT
192 TAAGACATTACTAAAATCTTATTCTCATTTAAGACACGAACTTAGACTTTACCAAAATTGGTGGG
* * ** * *
2159141 AAAAAAGCCTTTCTTTTAAAACCAAAGCATCAATATGATACAACCTAAAGAGAAGACTATGTCTC
257 AAAAAAACCTTTCATACAAAACCAAAGCATCAATATGATACAACCTAAAGAGAAGACAATGTCTA
* * * * * * * *
2159206 TAGCCCCTTATCCTGAGAAGAATGGGGATTAGTATGAGTATTTAAGTTTGTCTTATTTAAAAGAT
322 TAGCCCCTAATCCTAAAAACAATGGGGATTAGTATGAGTATTCAAGCTTGTCGTATTTAAAAGAC
2159271 AAACTTTGATTCTATCAAAAACGGTGGAA
387 AAACTTTGATTCTATCAAAAACGGTGGAA
2159300 GGAATACTTT
Statistics
Matches: 349, Mismatches: 55, Indels: 21
0.82 0.13 0.05
Matches are distributed among these distances:
425 147 0.42
426 25 0.07
430 3 0.01
432 3 0.01
433 1 0.00
434 1 0.00
435 1 0.00
437 3 0.01
438 106 0.30
439 44 0.13
440 15 0.04
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (432 bp):
GAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATAGAGACTATTACGAGAAACGATGCTTGTCTT
ATTTAAGTAATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGACTTCCAAGCAAAAAAAA
ATCACCAATATCATTTATCCTAATGTAGAGAATATGTTATAGTACCTAATCACAAAATGAATAAG
ACATTACTAAAATCTTATTCTCATTTAAGACACGAACTTAGACTTTACCAAAATTGGTGGGAAAA
AAACCTTTCATACAAAACCAAAGCATCAATATGATACAACCTAAAGAGAAGACAATGTCTATAGC
CCCTAATCCTAAAAACAATGGGGATTAGTATGAGTATTCAAGCTTGTCGTATTTAAAAGACAAAC
TTTGATTCTATCAAAAACGGTGGAAAGTAAAGCTTTTCTTGC
Found at i:2159797 original size:475 final size:476
Alignment explanation
Indices: 2158892--2164943 Score: 4791
Period size: 476 Copynumber: 12.9 Consensus size: 476
2158882 CTTTTCTTGC
* * * * * * *
2158892 GAATGTGTTTTGGCTTCCCAATCTTGAAGAGAATAGAGACTATTATGAGAAAC-GATGCTTGTCT
1 GAATGTGTTTTGGCTTTCCAATCTAGAAAAGAATGGAGACTGTTACGAGAATCAG-TGCTTGTCT
* * * ** * *
2158956 TTTTTATA-GAATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTGAAGCAAAAAA
65 TATTTA-AGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGC-AAAAG
* *
2159020 AAAATCATCAATATCATTTATCCTAATGA-GACGAATATGTTTATAGTACCTAATCAC-------
128 AAAATCATCAATATCATTTATCCTAATGAGGA-GAATGTGTTTATAGTGCCTAATCACAAAATGA
* *
2159077 ----A-A--ATTACTAGAATCCAAGTTTATCTCATTTGAGGCACGAACTTAGACTTTAC-AAAAT
192 ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAT
* * * ** * *
2159134 TGGTGGTAAAAAAGCCTTTCTTTTAAAACCAAAGCATCAATATGATACAACCTAAAGAGAAGACT
257 TGGTGGGAAAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACT
* * * ** * * * * * * *
2159199 ATGTCTCTAGCCCCTTATCCTGAGAAGAATGGGGATTAGTATGAGTATTTAAGTTTGTCTTATTT
322 ATGTTTATGGTGCCTAATCCTGAAAAGAATGAGGATTAGTATGAGTATTCATGTTTATCGTATTT
* * * * * *
2159264 AAAAGATAAACTTTGATTCTATCAAAAACGGTGGAAGGAATA-CTTTTTCTTGCGACACCAAAGC
387 AAGAGACAAACTTTGATTCTATAAAAAACGGTGGAAAGAAAAGC-TTTTCTTACGACACCAAAGC
*
2159328 ATCAATGTCATGTATCCTAATGAATG
451 ATCAATGTCATGTATCCTAATGAAGG
* * *
2159354 GAATGTGTTTTGGCTTTCCAATCTAGTAAAGAATGGAGACTGCTACGAGAATCAGTACTTGTCTT
1 GAATGTGTTTTGGCTTTCCAATCTAGAAAAGAATGGAGACTGTTACGAGAATCAGTGCTTGTCTT
* * *
2159419 ATTTAAGGGATTAACTTTGATTTTAAGGAAAATATGGCAAAGAAAAGATTTCCATGTAAAAGAAA
66 ATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
* * * *
2159484 ATCATCAATATCTTTTATCCTAGTGAGGAGAAT-TGTTTATAGTGCCTAACCATAAAATGAATGA
131 ATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
* * * * *
2159548 AGATCATTACTAGAATCAATATTTGTCTCATTTGAGGCACAAACTTAGACTTTACGAAAATTAGT
196 AGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT
* * *
2159613 GAGAAAAAAGCCTTACTTGTGAAACCAAAGCATCAATATGATTTATCCTAATGAGAAGACTATGT
261 GGGAAAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGT
* * * * * * * *
2159678 TTATGGTGCCTAATCCTGCAAAGAACGAAGATTTGTATGAATATTCTTTTTTATCGTATTTAGGA
326 TTATGGTGCCTAATCCTGAAAAGAATGAGGATTAGTATGAGTATTCATGTTTATCGTATTTAAGA
* * *
2159743 GACAAACTTTGATTCTATAAAAAATGGGGGAAAGAAAAGCTTTTCTTACGACACCAAAGCAACAA
391 GACAAACTTTGATTCTATAAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAA
* *
2159808 TGTCTTGTATCCTAA-CAAGG
456 TGTCATGTATCCTAATGAAGG
* * * * * *
2159828 GAATGTGTTTTGGCTTCCCAATCTTGAAAAGATTTGAAACTGTTACGAGAATC-GATGCTTGTTT
1 GAATGTGTTTTGGCTTTCCAATCTAGAAAAGAATGGAGACTGTTACGAGAATCAG-TGCTTGTCT
* * * * *
2159892 TTTTTAAAGGATGAACTTTTATTTTAAGGAAAATAGGGCAAAGAAATGA--T---TG-AAGAATA
65 TATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAA-AAGA
* * * * * *
2159951 AAATTATCAATATCATTTATCCTAATGAGGAAAATGTATTTATAGTGCTTAATTACAAAATGATT
129 AAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
* * * * *
2160016 GAAGATCTTTACTAGAATCCATGTTTGTCTCTTTTGAGGCACGAACTTAGACTTCATAAAAAATG
194 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTG
* **
2160081 CTGGGAAAAAAGCCTTTCTTGTGAAATGAAAGCATCAATATGATGTATCCTAATGAGAAGAC-AT
259 GTGGGAAAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTA-
* * * * * * *
2160145 TGTTTATGGTGCCTAATCCTAAAAATAATGGGGATGAGCATGAGTATTCAAGTTTATCTTATTTA
323 TGTTTATGGTGCCTAATCCTGAAAAGAATGAGGATTAGTATGAGTATTCATGTTTATCGTATTTA
* * * * * * *
2160210 AGAGATAAACTTTGATTCTATCAAAAATGGTGAAAAGAAAATCTTTTCTTACGACATCAAAGCAA
388 AGAGACAAACTTTGATTCTATAAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCAT
* * * * ** *
2160275 AAATGGTGGAAAGAAAATCTTTTCTTGTGACA-A
453 CAAT-GT--CATG--TATC----CTAATGA-AGG
* * * * ** **** ** * ** *
2160308 CAAAGCATCAATTTCAT-G-TATCCTAATGAAGGGAATATTTTTTGGCTTAC-ATT-CTTGAA-A
1 GAATG--T--GTTT--TGGCTTTCC-AATCTA--GAA-A-AGAATGG-AGACTGTTACGAGAATC
** * * * * * * **
2160368 AGAACTGAGAC--AATTACGAGAATCGATTCTTGTCTTATTTAAGGTATAAATATTATTTTAAAG
54 AGTGCT-TGTCTTATTTAAG-GGAT-GA-ACTT-TGAT-TTTAAGG----AA-A--A---T--AG
* * * *
2160431 GAAAATAAGCAAAGAAAAGATTTCAATGCAAAAGAAAATCTTCAATATCATTTATCCCAAAGAGG
101 G-------GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGG
* * * * * * * *
2160496 AAAATGTGTTTATGGTGCCTAATCAGAAAAATGGATGAAGATAATTACTATAATTCATGTTAGTC
159 AGAATGTGTTTATAGTGCCTAATCA-CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTC
* * * * * *
2160561 TCATTTGAGGCA--AACTCAAACTTTACGAAAATTGG-GGGGAAAAAGCTTTTCTTGTGAAACAA
223 TCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGTGAAACCA
* * * * *
2160623 AAGCATTAATATGATGTATTCTAATGAGAAGACAATGTTTATGGTGCCTAATCCTAAAAATAATT
288 AAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAA-T
* * * * *
2160688 G-GGATTAGTATAAGTATTTATGTTTATCTTATTTAAGAGACAAATTTTGATTCTA-ACAAAAAT
352 GAGGATTAGTATGAGTATTCATGTTTATCGTATTTAAGAGACAAACTTTGATTCTATA-AAAAAC
* * * *
2160751 GATTGAAAGAAAAGCTTTTCTT--G----C---G----AATGTCATGTATCCTAATAAATG
416 GGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTATCCTAATGAAGG
* * * * * * *
2160799 GAATGTATTTTTGG--TTCCTAATC-ATGAAAAGAATAGAGACTATTATGAAAATC-GATGTTTT
1 GAATGT-GTTTTGGCTTTCC-AATCTA-GAAAAGAATGGAGACTGTTACGAGAATCAG-TGCTTG
* **
2160860 TCTT-TTATAGGGGATGAACTTTGATTTTAAGGAAAATATAGCAAAGAAAAGATTTCCATGCAAA
62 TCTTATT-TAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAA
* ** * *
2160924 AGAAAATCATCAAAATCATTTATCCTAAACAAGAGAATGTGTTTATGGTGCCT-ATCACAAAATG
126 AGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG
* *** *
2160988 AATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGACACGAACTTAGACTTTGGGAAAC
191 AATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAA
* *
2161053 TTGGTGGGAAAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATTATGTATCCTATTGAGAAGAC
256 TTGGTGGGAAAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGAC
** * *
2161118 TATGTTTATGGTGCCTCTTCCTGAAAAGAACGAGGATTAGTATGAGTATTCATGTTCATCGTATT
321 TATGTTTATGGTGCCTAATCCTGAAAAGAATGAGGATTAGTATGAGTATTCATGTTTATCGTATT
* * ***
2161183 TAAGAGACAAACTTTGATTCTATGAAAAACGGTGGAAAGAAAAGTTTTTCTTGTAACACCAAAGC
386 TAAGAGACAAACTTTGATTCTATAAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGC
* * *
2161248 ATCAATGTCATGAATCTTAATGAAGC
451 ATCAATGTCATGTATCCTAATGAAGG
* * * * * *
2161274 CAATGTGTTTTGGCTTCCCATTCTGGAAAAGAAT-TAGGACTGTTATGAGAATCAGTG-TCTGTC
1 GAATGTGTTTTGGCTTTCCAATCTAGAAAAGAATGGA-GACTGTTACGAGAATCAGTGCT-TGTC
* * *
2161337 TTATTTAAGGGATAAACTTTGATTTTAAGAAAAATAGGGCATAGAAAAGATTTCCATGCAAAAGA
64 TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
* * * * *
2161402 AATTCATCAATATCATTTATCCTAATGAGGAGAATGTGTTCATGGTGCCTAATCACAAAAAGGAT
129 AAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
* * * * * * *
2161467 GAAGATCATTACTATAATTCATGTTTCTCTAATTTGAGACAAGAACTTTGACTTTACAAAAATTG
194 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTG
* ** * * *
2161532 GTGGGAAAAATGCCTTTCTTACGAAACCAAAGCATCAATGTCG-TGTATCCTAATAAGAAG--TC
259 GTGGGAAAAAAGCCTTTCTTGTGAAACCAAAGCATCAATAT-GATGTATCCTAATGAGAAGACTA
* * * * * *
2161594 TGTTTATGGTTCCTAATCTTGAAAATAATGGGGATTAGTATGAGTATTCATATTTATCTTATTTA
323 TGTTTATGGTGCCTAATCCTGAAAAGAATGAGGATTAGTATGAGTATTCATGTTTATCGTATTTA
* * * *
2161659 GGAGACAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAACTTTTCTT-----------G--T
388 AGAGACAAACTTTGATTCTATAAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCAT
*
2161711 GAATGTCATG-----T-AT-----
453 CAATGTCATGTATCCTAATGAAGG
* * * *
2161724 --A-G-GTTTTGGC-TTCCTAATCTCGTAAAGAATGGAGACTATTACGAGAATCAATGCTTGTCT
1 GAATGTGTTTTGGCTTTCC-AATCTAGAAAAGAATGGAGACTGTTACGAGAATCAGTGCTTGTCT
* * *
2161784 TTTTTAAGGGATGAACTTTGATTTTAA-GAAAAAATTGGCAAAGAAAAGATTTCCATGC-AAA-A
65 TATTTAAGGGATGAACTTTGATTTTAAGGAAAATA-GGGCAAAGAAAAGATTTCCATGCAAAAGA
* * * *
2161846 AAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATGGTTCCTGATCACAAAATGAAT
129 AAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
* * * * * * *
2161911 GAAGCTCATTACCATAATCCATGTTTGCCTCATTTAAGGCAAGAACTTAAACTTTACAAAAATTG
194 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTG
* * * * * *
2161976 GTGGGAAAAATGCCTTTCTTGTGAAACTAAAGCATCAGTATCG-TGTATCTTGATGAG-A-AC-C
259 GTGGGAAAAAAGCCTTTCTTGTGAAACCAAAGCATCAATAT-GATGTATCCTAATGAGAAGACTA
* * * * *
2162037 TGTTTATGGTG-CTAATCCTGAAAGGAATGGGGATTAGTATGTGTATTCATGTTTGTTTGT-TTT
323 TGTTTATGGTGCCTAATCCTGAAAAGAATGAGGATTAGTATGAGTATTCATGTTT-ATCGTATTT
* * * ** *
2162100 AAGAGACAAACTTTGATTTTATCAAAAACGGTTGAAAGAAAAGCTTTTCTTTTG-----AATG--
387 AAGAGACAAACTTTGATTCTATAAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCA
* * **
2162158 TCACT-T--T-TCT-C-AACAAAGG
452 TCAATGTCATGTATCCTAATGAAGG
* * ** ** * * * *
2162177 GAAAGTGTTTTTGG-TTTCCAATCTTGAAATTAATGGAGACAATTATGAAAATC-GATGTTTTTC
1 GAATGTG-TTTTGGCTTTCCAATCTAGAAAAGAATGGAGACTGTTACGAGAATCAG-TGCTTGTC
** *
2162240 TTTATTTTGGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGCAAAAG
64 -TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG
* * * *
2162305 AAAATCATTAATATCATTTATCCTAAAGAGGAGAATGTGCTTATAGTGCCTAATCGCAAAATGAA
128 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * * * *
2162370 TGAAGATCATTACTAAAAT-CTTATTTGTCTCATTTGAGGCACGAGCTTAGACTTCACAAAAATT
193 TGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATT
* * * * * ** **
2162434 GGTGAGAAAAAAGCTTTTCTTGCGAAGCCGAAGCATCAATATGATGTATTATAAAAAGAAGACTA
258 GGTGGGAAAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTA
* * * *
2162499 TGTTTATGGTGTCTTAA-CCAGAAAAGAATGAGGATTAGCATAAGTATTC------AT-G--TTT
323 TGTTTATGGTG-CCTAATCCTGAAAAGAATGAGGATTAGTATGAGTATTCATGTTTATCGTATTT
* * * * * * * *
2162554 AAGAGACAAACTTTGATTTTATAAAAAATGCTGG-AAGCAAAAGGTTTTCCTAAGACATCGAAGC
387 AAGAGACAAACTTTGATTCTATAAAAAACGGTGGAAAG-AAAAGCTTTTCTTACGACACCAAAGC
2162618 ATCAATGTCATGTATCCTAATGAAGG
451 ATCAATGTCATGTATCCTAATGAAGG
* * * *
2162644 GAATGTCTTTTGGC-TTCCTAGTCTAGAAAAGAATAGAGACTGTTACAAAGAATC-GATGCTTGT
1 GAATGTGTTTTGGCTTTCC-AATCTAGAAAAGAATGGAGACTGTTAC-GAGAATCAG-TGCTTGT
* * * * * * * *
2162707 ATTATTTAAGGAATGAACTTTGATTTTAAGAAAAATAGGACAAAAAAAAGATTTACACGTAAAAG
63 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG
* * * * *
2162772 AAAATCATTAATATCATTTATCCTAATGAAGAGAATGCG-TTGTAGTACCTAATCACAAAATGAA
128 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * * * * *
2162836 TGAAAATCATTACTAGAATCCATGTTTATCTTTATTTGAGGCACAAACTTAGACTTCACAAAAAA
193 TGAAGATCATTACTAGAATCCATGTTTGTC-TCATTTGAGGCACGAACTTAGACTTTACAAAAAT
* * * * * * *
2162901 TGGTGTGAAGAAAGCTTTTCTTGCGAAACGAAAGCATCAATATGATGTGTCCTAATGAGAAGATT
257 TGGTGGGAAAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACT
* * * * * * * * * *
2162966 GTTTTTATGGTGCCTAATCTTGAAAAAAAAAGAAGATTAGTATAAGTATTCACGTTTGTCATATT
322 ATGTTTATGGTGCCTAATCCTG-AAAAGAATGAGGATTAGTATGAGTATTCATGTTTATCGTATT
* * * * * *
2163031 TTAGAGACAAAATTTGATTAC-ATCAAAAACAGTGAAAAGAAAAGCTTTTCTTATGACACCAAAG
386 TAAGAGACAAACTTTGATT-CTATAAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAG
* * *
2163095 CATCAATGTCACGTATCCTAGTAAAGG
450 CATCAATGTCATGTATCCTAATGAAGG
* * * * * *
2163122 AAATGTGCTTT-GCCTTCCAATCTAGAAAAGAATGGAGACTGTTAC-ACGAATCAATGTTTTTCT
1 GAATGTGTTTTGGCTTTCCAATCTAGAAAAGAATGGAGACTGTTACGA-GAATCAGTGCTTGTCT
* * * * * *
2163185 TAGTTAAGGGAAGAACTTTGATTTTAAGGAAAATAGGGGAAAGAAAATATTTTCATGCAAAACAA
65 TATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAA
* * * * *
2163250 AATCATCAATATCATTTATCCTAATGAAGAGAATGTGTTTGTAGTGCCTATTCACAAACTAAATG
130 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
* * * *
2163315 AAGATCATTACAAAAATCCATGTTTGTCTCATTTAAGGCACGAACCTAGACTTTACAAAAATTGG
195 AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG
* *
2163380 TGGGAAAAAAGCCTTTCTT-TCGAAACCAATA-CATCAATATGATGTATCTTAATGAGAGGACTA
260 TGGGAAAAAAGCCTTTCTTGT-GAAACCAA-AGCATCAATATGATGTATCCTAATGAGAAGACTA
* * * * * *
2163443 TGTTTATAGTGCCTAATCTTGAAAAAAACGGGGATTAGTATGAGTATTCATGTTTGTCGTATTTA
323 TGTTTATGGTGCCTAATCCTGAAAAGAATGAGGATTAGTATGAGTATTCATGTTTATCGTATTTA
* * * * **
2163508 AGAGACAAACTTTGATTCTATAAAAAATGGTGAAAAGTAAAGCTTTTCTT--G-CA--AATGTGT
388 AGAGACAAACTTTGATTCTATAAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCAT
** * * **
2163568 -TTTGGC---T-TCCCAATCTTGAAAA
453 CAATGTCATGTATCCTAA---TGAAGG
* * ** * ** *** * * **
2163590 AAATGGGGATT-G--TT---A-CGAGAATCG-ATGCTTATCTTTTTTAAGAG-AT--GAAC-T-T
1 GAATGTGTTTTGGCTTTCCAATCTAGAAAAGAATGGAGA-C--TGTTACGAGAATCAGTGCTTGT
* * **** * * * *
2163642 -TTATTTTAA-GGA--AA-----A---TAAGG-CAA-A--GAAAAGATTTCCA-TGCAAAGGAAA
63 CTTA-TTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGA-AAAGATTTCCATGCAAA
* * * * ** * *
2163690 AT-----CATCAATATCATATATCCCAATAAGGAGAATGCATTTATAGTACATAATCACAAAATG
126 AGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG
* * * * *
2163750 AATTAAGATCATTACTGGAATCCATGTTTGTCTCATTTGAGGCACGAACTTGGACTTTGCAAATA
191 AATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAA
* ** * * *
2163815 TTGGTGGGAAAAAAGCCTTACTTGCAAAACCAAAGCATCAATATGATGTATCCTATTAAGAAGAG
256 TTGGTGGGAAAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGAC
** * * * *
2163880 TATGTTTATGGCACCTAAT-CTTATAAAGAATG-GAGATTAGTATGAGTATTCTTTTTTGTCGTA
321 TATGTTTATGGTGCCTAATCCTGA-AAAGAATGAG-GATTAGTATGAGTATTCATGTTTATCGTA
* ** *
2163943 TTTAGGAGACAAACTTTGATTCTATAAAAAAATAGTGGAAAGAAAAGCTTTTCTTACGACACTAA
384 TTTAAGAGACAAACTTTGATTCTAT-AAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAA
* *
2164008 AGCATCAATGTCATGTTTCCTAAAG-AGG
448 AGCATCAATGTCATGTATCCTAATGAAGG
* * * * ** * *
2164036 GAATGTGTTTT-TCTTCCCAATCTTGAAAAGAATGGAGAATGTTACGACCATCAATGCTTGTCCT
1 GAATGTGTTTTGGCTTTCCAATCTAGAAAAGAATGGAGACTGTTACGAGAATCAGTGCTTGTCTT
* * *
2164100 AATTAAGGGATGAACTTTGATTTTATGGAAAATAGGGCAAAGAAAAGATTTCAATGCAAAAGAAA
66 ATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
* * *
2164165 A-CAATGAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGAGCCTAATCACAAAATGAAAG
131 ATC-ATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
* * * *
2164229 AAGATTATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTCACAAAAAATGG
195 AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG
* ** * * * * *
2164294 TGGGAAAAAAGCTTTTCTTGCAAAACGAAAGCATCAATACGATGTATCCTAATGAGAAAATTATT
260 TGGGAAAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATG
* * * * ** * *
2164359 TTTACGGTGCCTAATCATGAAAAGAACGAGGATTAGTATGAGTATTCACGTTGGTCGCATTTTAG
325 TTTATGGTGCCTAATCCTGAAAAGAATGAGGATTAGTATGAGTATTCATGTTTATCGTATTTAAG
* ** * *
2164424 AGACAAACTTGGATTCTATAAAAAACAATGGAAATAAAAGCTTTTCTTGCGACACCAAAGCATCA
390 AGACAAACTTTGATTCTATAAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCA
* * *
2164489 CTATCATGTATTCTAATGAAGG
455 ATGTCATGTATCCTAATGAAGG
* * * * * * * ** * * ** * *
2164511 AAATGGGCTTTGGCTTCCCAATCTTGAAAATAATAGAGACTGTTGTGCGAATTAACGTTTTTCTT
1 GAATGTGTTTTGGCTTTCCAATCTAGAAAAGAATGGAGACTGTTACGAGAATCAGTGCTTGTCTT
* * * * * *
2164576 ATGTAATGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAAAAAAGATTTCCATACAAAAGGAA
66 ATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
* * * * *
2164641 ACCA-CTAAAATCATTTATCCTAATGAGAAGAATGTGTTTGTAGTGCCTAATCACTAAATGAATG
131 ATCATC-AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
* * * * **
2164705 AAGATCATTGCTAAAATCCATGTTTGTCTCACTTGAGGCACGAACCTAGACTTTATGAAAATTGG
195 AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG
* * * *
2164770 TGGGAAAAAAACCTTTCTTGTGAAACCAATGCATCAATAGGATGTATCCTAATGAGAAGACTATA
260 TGGGAAAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATG
* * **
2164835 TTTATAGTGCCTAATCCTGAAAAGAACGAGGATTAGCT-TGAGTATTCATGTTTGCCGTATTTAA
325 TTTATGGTGCCTAATCCTGAAAAGAATGAGGATTAG-TATGAGTATTCATGTTTATCGTATTTAA
* * * ** *
2164899 GAAACAAACTTTAATTCTATCAAAAACTCTGGAAAGTAAAGCTTT
389 GAGACAAACTTTGATTCTATAAAAAACGGTGGAAAGAAAAGCTTT
2164944 CCTTGCGAGT
Statistics
Matches: 4455, Mismatches: 873, Indels: 510
0.76 0.15 0.09
Matches are distributed among these distances:
438 4 0.00
439 229 0.05
440 26 0.01
442 88 0.02
443 16 0.00
444 176 0.04
445 17 0.00
446 100 0.02
447 7 0.00
448 12 0.00
449 1 0.00
450 11 0.00
451 4 0.00
452 5 0.00
453 8 0.00
454 46 0.01
455 9 0.00
456 10 0.00
457 34 0.01
458 65 0.01
459 140 0.03
460 96 0.02
461 145 0.03
462 272 0.06
463 32 0.01
464 9 0.00
465 7 0.00
466 57 0.01
467 133 0.03
468 125 0.03
469 65 0.01
470 266 0.06
471 4 0.00
472 4 0.00
473 4 0.00
474 309 0.07
475 656 0.15
476 680 0.15
477 77 0.02
478 84 0.02
479 5 0.00
480 11 0.00
481 5 0.00
482 9 0.00
483 7 0.00
484 14 0.00
485 8 0.00
486 12 0.00
487 9 0.00
488 13 0.00
489 9 0.00
490 5 0.00
491 14 0.00
495 5 0.00
496 1 0.00
497 2 0.00
498 1 0.00
499 2 0.00
500 3 0.00
501 1 0.00
503 3 0.00
504 1 0.00
507 1 0.00
510 11 0.00
511 1 0.00
512 1 0.00
513 153 0.03
514 19 0.00
515 52 0.01
516 44 0.01
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (476 bp):
GAATGTGTTTTGGCTTTCCAATCTAGAAAAGAATGGAGACTGTTACGAGAATCAGTGCTTGTCTT
ATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
ATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
AGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT
GGGAAAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGT
TTATGGTGCCTAATCCTGAAAAGAATGAGGATTAGTATGAGTATTCATGTTTATCGTATTTAAGA
GACAAACTTTGATTCTATAAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAA
TGTCATGTATCCTAATGAAGG
Found at i:2160288 original size:41 final size:41
Alignment explanation
Indices: 2160231--2160314 Score: 132
Period size: 41 Copynumber: 2.0 Consensus size: 41
2160221 TTGATTCTAT
*
2160231 CAAAAATGGTGAAAAGAAAATCTTTTCTTACGACATCAAAG
1 CAAAAATGGTGAAAAGAAAATCTTTTCTTACGACAACAAAG
* **
2160272 CAAAAATGGTGGAAAGAAAATCTTTTCTTGTGACAACAAAG
1 CAAAAATGGTGAAAAGAAAATCTTTTCTTACGACAACAAAG
2160313 CA
1 CA
2160315 TCAATTTCAT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.45, C:0.14, G:0.17, T:0.24
Consensus pattern (41 bp):
CAAAAATGGTGAAAAGAAAATCTTTTCTTACGACAACAAAG
Found at i:2165778 original size:13 final size:13
Alignment explanation
Indices: 2165760--2165785 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2165750 CAATTTTTTG
2165760 TGTATCGATACAT
1 TGTATCGATACAT
2165773 TGTATCGATACAT
1 TGTATCGATACAT
2165786 ACTTACTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2165870 original size:20 final size:20
Alignment explanation
Indices: 2165845--2165917 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
2165835 CAACTTTTTT
2165845 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
2165865 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
2165886 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
2165906 ATGTATCGATAC
1 ATGTATCGATAC
2165918 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:2165883 original size:41 final size:41
Alignment explanation
Indices: 2165824--2165917 Score: 170
Period size: 41 Copynumber: 2.3 Consensus size: 41
2165814 CTGCCAAGAA
*
2165824 ATGTATCGATACAACTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACAACTTTTTCATGTATCGATACATTGCAAC
*
2165865 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACAACTTTTTCATGTATCGATACATTGCAAC
2165906 ATGTATCGATAC
1 ATGTATCGATAC
2165918 TTTGAATTGT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (41 bp):
ATGTATCGATACAACTTTTTCATGTATCGATACATTGCAAC
Found at i:2165899 original size:21 final size:21
Alignment explanation
Indices: 2165824--2165899 Score: 91
Period size: 21 Copynumber: 3.7 Consensus size: 21
2165814 CTGCCAAGAA
* *
2165824 ATGTATCGATACAACTTTTTT
1 ATGTATCGATACATCTTTTTC
****
2165845 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
2165865 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
2165886 ATGTATCGATACAT
1 ATGTATCGATACAT
2165900 TGCAACATGT
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
20 15 0.34
21 29 0.66
ACGTcount: A:0.30, C:0.17, G:0.12, T:0.41
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:2168251 original size:473 final size:472
Alignment explanation
Indices: 2166433--2168798 Score: 2663
Period size: 474 Copynumber: 5.0 Consensus size: 472
2166423 TACTTGTGAA
* * *
2166433 ACCAAAGCATCAATGTCATGTTTCCTAAAGAGGGAATGTG-TTTGGCTTCCCAATCCTAAAAAGA
1 ACCAAAGCATCAATGTCATGTATCCTAAAGAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGA
* * * * ** *
2166497 ATGAAGACTATTACGAGAATCGATGTTTGTCTTAATTAAAAGATGAACTTTGATTTTATGGAAAA
66 ATG-AGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTT-ATTTTAAGGAAAA
* * * *
2166562 TAGGGCAAATAAAAGATTTCCACGCAAAAGAAAATAATTAATATCATTTATCCTAATGAGGAGAA
129 TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
** * *
2166627 TACGTTTATAGTGCCTAAACACAAAATGAATGAAGATAATTACTAGAATCCATGTTTGTCTCATT
194 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATT
* * * *
2166692 TGAGGCACGAACTGAGACTT-TACGAAATTGGTGGGAAAAAAGCTTTTCTTG-TAGAACGAAAGC
259 TGAGGCACGAACTTAGACTTATA-AAAATTGGTGGGAAAAAAGCCTTTCTTGCTA-AACCAAAGC
* * * * * * * *
2166755 ATCAATATGATGCATCCAAAAGAGAAGAATATGTTTATGGAGCCTTATCCTAAAAAGAATGAGGA
322 ATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGA
* * *
2166820 TTTGTATGAGTAGTT-ATGTTTATCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGG
387 TTAGTATGAGTA-TTCATGTTTATCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGG
*
2166884 AAAGAAAAGCTTTTCTTGCGAC
451 AAAGAAAAGCTTTTCTTGCAAC
* * * * * * *
2166906 ACCAATGCATCAATGTCATGTA-CCTTAATGAAGGGAACGTGCTTTGCCTTCCCAATCTAGTAAA
1 ACCAAAGCATCAATGTCATGTATCC-TAAAG-AGGGAATGTGTTTTGGCTTCCCAATCTTGAAAA
* * * * *
2166970 GAATG-GATACTATTACGAGAATCGTTGCTTGTCTTCTTTAAGGGATAAACTTTGTTTTTAAGGA
64 GAATGAGAT--TGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTT-ATTTTAAGGA
* * * * * * * *
2167034 AAATCGGGCAAAGAAAATATTTCCAAGAAAAAAAAAATCATCTATATCTTTTATCCAAATGA-GA
126 AAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGA
* * * *
2167098 TGAATGCGTTTATCGTGCCTAACCACAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCT
191 -GAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCT
** * ** * *
2167163 TGTTTGAGGCACGAACTTAGACATTATGAAAATTGGTGGGAAAAAATTCTTCCTTGCGAAACCAA
255 CATTTGAGGCACGAACTTAGAC-TTATAAAAATTGGTGGGAAAAAAGCCTTTCTTGCTAAACCAA
* *
2167228 AACATCAATATGATGTATCCTAATGAGAAGACTATCTTTATGGTGCCTAATCCT-ACAAAGAATG
319 AGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGA-AAAGAATG
* * * * **
2167292 GGGATTAGTTTGAGTATTCATTTTTGTCATATTTTGGAGACAAAACTTTGATTCTATCAAAAATG
383 GGGATTAGTATGAGTATTCATGTTTATCTTATTTAAGAGAC-AAACTTTGATTCTATCAAAAATG
* **
2167357 GTGAAAAGAAAAGCTTTTCTTGTGAC
447 GTGGAAAGAAAAGCTTTTCTTGCAAC
* * * * *
2167383 ACCAAAGCAACAATATTATGTATCCTAATGAGGGAATGTTTTTTGGCTTCCCAATCTTGAAAA-A
1 ACCAAAGCATCAATGTCATGTATCCTAAAGAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGA
* * * *
2167447 ATAGAGACTGTTATGAGAATCGATACTTGTCTTTTTTAAGGGATGAACTTTTATTTTAAGGAAAA
66 AT-GAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAAC-TTTATTTTAAGGAAAA
* * * *
2167512 TAGGGTAAAGAAAAGATTTTCATGGAAAA-AAAATCATCAATATCATTTATCCTAATGAGGAAAA
129 TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
* * * * *
2167576 TGTGTTTTTAGTGCCTAATTACAAAATGAATGAAGATCTTTACTAGAATCCATATTTGTCTCTTT
194 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATT
* * * * * *
2167641 TGAGGCATGAAGTTAGACTTTACAAAAAATGGTGGGAAAAAAGCTTTTCTTG-TGAAACAAAAGC
259 TGAGGCACGAACTTAGAC-TTATAAAAATTGGTGGGAAAAAAGCCTTTCTTGCT-AAACCAAAGC
* * ** * *
2167705 ATCAATATGATGTATCTTAATGAGAAGAGTATGTTTATGGTGTGTAATCCTG-AAAGCATGGAGA
322 ATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGA
* * * *
2167769 TTTGTATGAGTATTCAAGTTTATCTTATTTAAAAGACAAACTTTGATTCAATCAAAAATGGTGGA
387 TTAGTATGAGTATTCATGTTTATCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGA
*
2167834 AAGAAAAGCTTTTATTGCAAC
452 AAGAAAAGCTTTTCTTGCAAC
* * * * * *
2167855 ATCAAAGCATCAACGTCATGTATCATAACAGAGGGAATGTGTTTTGGCTTCACAATCGTGTAAAG
1 ACCAAAGCATCAATGTCATGTATCCTAA-AGAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAG
* ** * *
2167920 AACTGAGATTGTTACAAGAATCGATTTTTGTCTTATTTAAGGTACGAA-TATTATTTTAAAGGAA
65 AA-TGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACT-TTATTTT-AAGGAA
* * * *
2167984 AATA-TGCAAAGAAAA-ATTTTCATGCAAAAGAAAATCTTCAATATCATTTATCCTTATGAGGAG
127 AATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAG
* * * *
2168047 AATATGTTTATAGTGCCTAATCACAAATTGAATGATA-ATCATTACTAGAATCTATGTTTGCCTC
192 AATGTGTTTATAGTGCCTAATCACAAAATGAATGA-AGATCATTACTAGAATCCATGTTTGTCTC
* *
2168111 ATTTCAGGCA-GAACTTAGACTTATAAAAATTGGTGGGAAAAACGCCTTTCTTGCTAAACCAAAG
256 ATTTGAGGCACGAACTTAGACTTATAAAAATTGGTGGGAAAAAAGCCTTTCTTGCTAAACCAAAG
* * * ** *
2168175 CATCAATATGATGCATCCTAAAGGGGAAGACTATGTTTATGGTGCCTTCTCCTGAAAAAAATGGG
321 CATCAATATGATGTATCCT-AATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGG
* * * * *
2168240 GATTAGTATGAGTATTCATGTTTGTCTTTTTTAAGAGACAAACTTTGATTTTGTC-AAAATCGAT
385 GATTAGTATGAGTATTCATGTTTATCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAT-GGT
2168304 GGAAAGAAAAGCTTTTCTTGCAAC
449 GGAAAGAAAAGCTTTTCTTGCAAC
* * * * * *
2168328 AACAAAGCATCAGTGTCTTGTATCCTAACGAAGAGAATGTGTTTGGGCTTCCCAATCTTGAAAAG
1 ACCAAAGCATCAATGTCATGTATCCTAAAG-AGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAG
* * *
2168393 AGTGGAGATTGTTACGAGAAAT-AATGCTTGTCTTCTTTAAGGGATGAACTTTGATTTTAAGGAA
65 AAT-GAGATTGTTACGAG-AATCGATGCTTGTCTTATTTAAGGGATGAACTTT-ATTTTAAGGAA
* * * *
2168457 AATAGGGCGAAGAAAAGATTCCCATGCAAAAGAAAATCATCAATATCAATTATCCTAAT-ATGAA
127 AATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA-GGA
* * * *
2168521 GAATGTG-TTATAATGCCTAATCAAAAAATGAAAGAAGATCATTGCTAGAATCCATGTTTGTCTC
191 GAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTC
* * * *
2168585 ATTTGAGGCACGAATTTAGACTT-TACCAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAATCCCA
256 ATTTGAGGCACGAACTTAGACTTATA--AAAATTGGTGGGAAAAAAGCCTTTCTTGCTAAACCAA
* * ** * * * * *
2168649 A-CATCAATATGATATATCCTAATGAGATGACTACATTTACGCTACCTAATCTTGAAGAGAATGG
319 AGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGG
* * * *
2168713 AGATTACTATGAGTATTCATGTTTATCGTATTTAAGAGACAAACTTTGATTCTATGAAAAATGGT
384 GGATTAGTATGAGTATTCATGTTTATCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGT
* **
2168778 GGAAAGTAAAGCACTTCTTGC
449 GGAAAGAAAAGCTTTTCTTGC
2168799 GAATGTGTTT
Statistics
Matches: 1581, Mismatches: 269, Indels: 85
0.82 0.14 0.04
Matches are distributed among these distances:
471 54 0.03
472 126 0.08
473 380 0.24
474 416 0.26
475 352 0.22
476 179 0.11
477 72 0.05
478 2 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.32
Consensus pattern (472 bp):
ACCAAAGCATCAATGTCATGTATCCTAAAGAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGA
ATGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTATTTTAAGGAAAATA
GGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATG
TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG
AGGCACGAACTTAGACTTATAAAAATTGGTGGGAAAAAAGCCTTTCTTGCTAAACCAAAGCATCA
ATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAG
TATGAGTATTCATGTTTATCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGA
AAAGCTTTTCTTGCAAC
Found at i:2169220 original size:437 final size:436
Alignment explanation
Indices: 2168435--2169226 Score: 1015
Period size: 437 Copynumber: 1.8 Consensus size: 436
2168425 TTCTTTAAGG
* * * *
2168435 GATGAACTTTGATTTTAAGGAAAATAGGGCGAAGAAAAGATTCCCATGCAAAAGAAAATCATCAA
1 GATGAACATTGATTTTAAAGAAAATAGGGCAAAGAAAAGATTCCCACGCAAAAGAAAATCATCAA
* * *
2168500 TATCAATTATCCTAATATGAAGAATGTGTTATAATGCCTAATCAAAAAATGAAAGAAGATCATTG
66 TATCAATTATCCTAATATGAAGAATGTATTATAATGCCTAATCAAAAAATGAAAGAAGAACATTA
* * *
2168565 CTAGAATCCATGTTTGTCTCATTTGAGGCACGAATTTAGACTTTACCAAAATTGGTGGGAAAAAA
131 CTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACATTACCAAAATTGGTGGGAAAAAA
* * * * *
2168630 GCCTTTCTTGCGAATCCCAACATCAATATGATATATCCTAATGAGATGACTACATTTACGCTACC
196 GCCTTTCTTGAGAAGCCAAACATCAATATGATATATCCTAATGAAAAGACTACATTTACGCTACC
* *
2168695 TAATCTTGAAGAGAATGGAGATTACTATGAGTATTCATGTTTATCGTATTTAAGAGACAAACTTT
261 TAATCTTGAAGAAAATGGAGATTACTATGAATATTCATGTTTATCGTATTTAAGAGACAAACTTT
* *** *
2168760 GATTCTATGAAAAATGGTGGAAAGTAAAGCACTTCTTGCGAATGTGTTTTGGCTTCCAAATTTTG
326 GATTCTATCAAAAACAATGGAAAGAAAAGCACTTCTTGCGAATGTGTTTTGGCTTCCAAATTTTG
2168825 AGAAAAAAAAGACTGTTACGAGAATCGATTCTTATCTTTTTTACGA
391 AGAAAAAAAAGACTGTTACGAGAATCGATTCTTATCTTTTTTACGA
**
2168871 GATGAACATTGATTTTAAAGAAAATAGGGCAAAGAAAAGATTTTCACGCAAAAGAAAATCATCAA
1 GATGAACATTGATTTTAAAGAAAATAGGGCAAAGAAAAGATTCCCACGCAAAAGAAAATCATCAA
* ** * * * *
2168936 TATCATTTATCCTAATGA-GGCGAATGTATTAATAGTGTCTAATCACAAAATGAATA-AGGAACA
66 TATCAATTATCCTAAT-ATGAAGAATGTATT-ATAATGCCTAATCAAAAAATGAA-AGAAGAACA
* *
2168999 TTACTAGAATCCATGTTTGTCTCATTTGAGGCATAAACTTAGACATTA-CAACAATTTGTGGGAA
128 TTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACATTACCAA-AATTGGTGGGAA
* * * **
2169063 AAAAGCCTTTCTTGTAG-AGCCAAAGCGTTAATATTG-TGTATCCTAATGAAAAGACTATGTTTA
192 AAAAGCCTTTCTTG-AGAAGCCAAA-CATCAATA-TGATATATCCTAATGAAAAGACTACATTTA
* * * * * ** * *
2169126 TGGTTCCTAATCTTGAA-AAAATAGG-GATTAGTATGAATATTCATGTTTGTTTTATTTAGGGGA
254 CGCTACCTAATCTTGAAGAAAAT-GGAGATTACTATGAATATTCATGTTTATCGTATTTAAGAGA
*
2169189 CAAA-TTTTATTTCTATCAAAAACAATGGAAAGAAAAGC
318 CAAACTTTGA-TTCTATCAAAAACAATGGAAAGAAAAGC
2169227 TTTTCTTACG
Statistics
Matches: 299, Mismatches: 48, Indels: 17
0.82 0.13 0.05
Matches are distributed among these distances:
436 90 0.30
437 161 0.54
438 46 0.15
439 2 0.01
ACGTcount: A:0.38, C:0.13, G:0.17, T:0.31
Consensus pattern (436 bp):
GATGAACATTGATTTTAAAGAAAATAGGGCAAAGAAAAGATTCCCACGCAAAAGAAAATCATCAA
TATCAATTATCCTAATATGAAGAATGTATTATAATGCCTAATCAAAAAATGAAAGAAGAACATTA
CTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACATTACCAAAATTGGTGGGAAAAAA
GCCTTTCTTGAGAAGCCAAACATCAATATGATATATCCTAATGAAAAGACTACATTTACGCTACC
TAATCTTGAAGAAAATGGAGATTACTATGAATATTCATGTTTATCGTATTTAAGAGACAAACTTT
GATTCTATCAAAAACAATGGAAAGAAAAGCACTTCTTGCGAATGTGTTTTGGCTTCCAAATTTTG
AGAAAAAAAAGACTGTTACGAGAATCGATTCTTATCTTTTTTACGA
Found at i:2170626 original size:20 final size:21
Alignment explanation
Indices: 2170581--2170634 Score: 58
Period size: 20 Copynumber: 2.7 Consensus size: 21
2170571 CTGCCAATTT
* *
2170581 TATGTATCGATAC-AATTCAG
1 TATGTATCGATACAAAGTCAA
*
2170601 TGTGTATCGATACAAAGT-AA
1 TATGTATCGATACAAAGTCAA
*
2170621 TATGTATTGATACA
1 TATGTATCGATACA
2170635 TCTGGGTGTG
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
20 25 0.89
21 3 0.11
ACGTcount: A:0.37, C:0.11, G:0.17, T:0.35
Consensus pattern (21 bp):
TATGTATCGATACAAAGTCAA
Found at i:2171247 original size:21 final size:22
Alignment explanation
Indices: 2171212--2171254 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
2171202 AGAAATTTTC
2171212 AATTTTGTACTCCCCCTTAATA
1 AATTTTGTACTCCCCCTTAATA
*
2171234 AATTTT-TTCTCCCCCTTAATA
1 AATTTTGTACTCCCCCTTAATA
2171255 GATTCTTACA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.26, C:0.28, G:0.02, T:0.44
Consensus pattern (22 bp):
AATTTTGTACTCCCCCTTAATA
Done.