Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold400
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2847997
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
File 14 of 17
Found at i:2180889 original size:476 final size:473
Alignment explanation
Indices: 2179519--2185999 Score: 5863
Period size: 460 Copynumber: 13.8 Consensus size: 473
2179509 GATCCTAACA
* * * * *
2179519 CTTGCCTTATTTAAGGGATGAA-TTTGGATTTTAAGG-AAATAAGGCAATGAAAAGATTTTCAAG
1 CTTGTCTTATTTAAGGGATGAACTTT-GATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATG
* * *
2179582 CAAAAGAAAATCATCAAAAT-ATTTATTCTAATGAGGAGAATGTGTTTATAGTGCCTATTCA-AG
65 CAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACA-
* * * * * *
2179645 GAATGAATGAAGATCATTACTAGAATCCATATTTGTCTCACTTGAGACACGAGCTTAGACTTCAC
129 AAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAC
* ** ** ** * *
2179710 AAAAATTGGTGGAAAGAAAGCCTTTCTTGCAAAACCATTGCATCAATAACATGTATCTTAATGCG
194 AAAAATTGGTGGGAA-AAAGCCTTTCTTGTGAAACCAAAGCATCAATATGATGTATCCTAATGAG
* * * * * *
2179775 AAAATTAGGTTTATGGTGCCTAATCCTCAAAAGAATGGGGATTAGTATGACTATTTATGTTTGTC
258 AAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTC
* * * * *
2179840 TTATATAAGAGATAAACTTTTATTCTATCAAAAACGATTGAAAGAAAAGCTTTTC-T-TG----C
323 TTATTTAA-AGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGACACC
* * * * *
2179899 GAA-TATC-ATG-CAT-T--TTAAT-AAAGGGAATGTGTTTTTGG-TTCCTAA-C-TGAAAAGAA
387 AAAGCATCAATGTCATGTACCTAATGAAA-GGAATGT-ATTTTGGCTTCCCAATCTTGAAAAGAA
* * * * * *
2179954 TGGAAACTGTTATGTA-AATCAATA
450 TTGAGACTATTACG-AGAATCGATG
* * *
2179978 CTT-TCCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGCAAAAAAAAAATTT-CATG
1 CTTGT-CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATG
* * * *
2180041 CAAAAAAAAATCATCAATATCATTTATCCTAAAGAGGAGAATGTATTTATAGTCCCTAATCACAA
65 CAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAA
* *
2180106 AATGAATGAAGATGATTCCTAGAATCCATGTTTGTCTCATTTGAGGCAC-AGACTTAGACTTTAC
130 AATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGA-ACTTAGACTTTAC
* * * * *
2180170 GAAAATTGGTGGGAAAAAATCCTTTCTTGCGAAACCAAAGTATCAATATGATGTATCCTATTGAG
194 AAAAATTGGTGGG-AAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATGATGTATCCTAATGAG
* ** * *
2180235 AAGACTATGTTTATGGTACCTAATCCTGAAAAGAACAGGGATTAGTATGAGTGTTCATGTTTATC
258 AAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTC
* * * * *
2180300 ATT-TTAAAGAGATAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACAT
323 -TTATTTAA-AGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGACAC
* * * *
2180364 CAAAGGATCAATGTCATGTATCCTAATG-AAGAAAATGTGTTTTGGCTTCCTAATCTTGAAAAGA
386 CAAAGCATCAATGTCATGTA-CCTAATGAAAG-GAATGTATTTTGGCTTCCCAATCTTGAAAAGA
* *
2180428 ATTGAGATTGTTACGAGAATCGATG
449 ATTGAGACTATTACGAGAATCGATG
** * *
2180453 CTTGTCTTATTTAAGGGACAAACTTTGATTTTAAGAAAAATAGGGCACAGAAAAGATTTCCATGC
1 CTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGC
* * * * *
2180518 AAATGAAAATTACCAATATCATTTATCTTAATGAGGAGAAAGTGTTTATAGTGCCTAATCACAAA
66 AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAA
* * * * * * *
2180583 ATAAATAAAAATCATTACTAGAATCCATGTTTGTATCATTTGAGGCACGAACCTAGTCTTTAAAA
131 ATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAA
2180648 AAATTGGTGGGAAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAG
196 AAATTGGTGGGAAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAG
** * * *
2180713 ACTACATTTGTGGTGCCTAATCCTGAAAGGAATGGGGATTAGCATGAGTATTCATGTTTGT-TAT
261 ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCT-T
* * * * * *
2180777 ATTTAAATGACAAAATTTGATTCTATTAAAAACGATTGGAAAGTACAGC-TTTCTTTGTGGCACC
325 ATTTAAA-GACAAACTTTGATTCTATCAAAAACG-GTGGAAAGAAAAGCTTTTC-TTGTGACACC
* * *
2180841 AATGCATCAATGTCATGTACCTTAATGAAAGGAATGCATTTTGGCTTCCCAATCTTGAAAAG-AG
387 AAAGCATCAATGTCATGTACC-TAATGAAAGGAATGTATTTTGGCTTCCCAATCTTGAAAAGAAT
*
2180905 TGAAGACTATTACGAGAATCGAAG
451 TG-AGACTATTACGAGAATCGATG
* * * * *
2180929 CTTGTCTTATTTAAGGGATGAACTTTGATTTTAGGGAAAATAAGGCGAAGAAAGGTTTTCCATGC
1 CTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGC
* *
2180994 AAAAGAAAATCACCAATATCATTTATCCTAATGTGGAGAATGTG-TTATAGTGCCTAATCACAAA
66 AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAA
* * * * ** * *
2181058 ATGACTGAAGATCATTACTAAAATCCTTATTTGTCTCATTTGAGATACGGACTTAGATTTTATC-
131 ATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTA-CA
*
2181122 AAAATTGGTGGGAAAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATGATATATCCTAATGAGA
195 AAAATTGGTGGG-AAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATGATGTATCCTAATGAGA
** * * *
2181187 AGACTAAATTTATGGTGCCTAATCCTAAAAAGAACGGGGATTAGTATGAGTATTCATGTTTGTCA
259 AGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCT
* * * *
2181252 TATTTAAAAGACAAACTTTGATTATATCAAAAATGGTGGAAAGTAAAGTTTTTCTTGTG-----A
324 TATTT-AAAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGACACCA
* * *** * * * * * *** * **
2181312 ATG-TTTTTTGAC-T-T-CCAAATCTTGAAAAGAAGGAAGACT-G-TT-ACAA----GAATCGAT
388 AAGCATCAATGTCATGTACCTAA---TGAAAGGAATGTATTTTGGCTTCCCAATCTTGAAAAGA-
* **** * * *
2181366 GCTTGTCTTTTTTAAG-GAAT-GA-A
449 -ATTGAGACTATTACGAGAATCGATG
** * **** * *** * * **
2181389 CTT-TGAT-TTTAA-GGA--AA--AT-AAGGCAAGGAAAAGATTTCTAAGCAAAAAAAAAT-CAT
1 CTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG--AAAAGATTTCCAT
* ** * * * * *** * * ** * ***
2181445 -C-AATGTCATTTATC-CTAACGAGGCGGAT-GT-GTTTGTA-ATGC------------CTAATC
64 GCAAAAGAAAATCATCAATATC-A--TTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC
* * **
2181492 ACAAAATAAATGAAGATTATTACTAGAATCCATGTTTGTCTCATTTGAAACACGAACTTAGACTT
126 ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTT
* * * * * *
2181557 TACAAAATTTGGTGGTAAAAAAGCCTTTCTTTTAAAACCAAAGCATCAATATGATGCATCCTAAA
191 TACAAAAATTGGTGG-GAAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATGATGTATCCTAAT
* * * * * * * * *
2181622 GAGAAGACTATGTTTTTGGTCCCTTATCATTAAAAAAAAGGGGATTAGTATGAGTATTCAAGCTT
255 GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTT
* * * * *
2181687 GTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAGGAATAGTTTTTCTTGCGAC
320 GTCTTATTTAA-AGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGAC
* * * * *
2181752 ACCAAAGCATCAATGTTATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCTAATC-TAATAAA
384 ACCAAAGCATCAATGTCATGTA-CCTAATGAAAGGAATGTATTTTGGCTTCCCAATCTTGA-AAA
* * * * *
2181816 GAATGGAGGCTGTTACGAGAATCAATA
447 GAATTGAGACTATTACGAGAATCGATG
* * **
2181843 CTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATATGACAAAGAAAAAAGATTTCTGT
1 CTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG--AAAAGATTTCCAT
* * * * * * *
2181908 TCAAAAGAAAATCATCAATATCTTTTATCCT-GTGAGGATAATGTGTTTACAGTGCCTAACCATA
64 GCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACA
* * *
2181972 AAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACATTAT
129 AAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAC
* * * *
2182037 GAAAATTAGTGGGAAAAAAGCCTTACTTGTGAAACCAAAGCATCAATATGATGTACCCTAATGAG
194 AAAAATTGGTGGG-AAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATGATGTATCCTAATGAG
* * ** * * *
2182102 AAGACTATGTTTATGGTGCCTAATCTTGTAAAGAACAGGGATTTGTATGAATATTCAT-TCTTAT
258 AAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGT-TTGT
* * * * * *
2182166 CGTATTTAGGAGACAAACTTTGATTCTATCAAAAATGGAGGAAAAAAAAGCTTTTCTTGCGACAC
322 CTTATTTA-AAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGACAC
* ** * * *
2182231 CAAAGCAAT-AATGTCTTACATCCTAACG-AGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGA
386 CAAAGC-ATCAATGTCATGTA-CCTAATGAAAGGAATGTATTTTGGCTTCCCAATCTTGAAAAGA
* *
2182294 ATGGAGACTATTACGAGAATCGATT
449 ATTGAGACTATTACGAGAATCGATG
* * * * * *
2182319 CTTGTCTTTTTTATGGAATGAACTTTTATTTTAAGGAAAATAAGGCAAAGAAAAGATTT-TATGC
1 CTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGC
* * *
2182383 AAAATAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGCGCCTAATTACAAA
66 AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAA
* *
2182448 ATGAATGAAGATCTTTACTAGAATCCATGTTTGTCTCTTTTGAGGCACGAACTTAGACTTTACAA
131 ATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAA
* *
2182513 AAAATGCTGGGAAAAAAGCCTTTCTTGTGAAATGAAAGCATCAATCCTTTCTTGTGAAATGAGAG
196 AAATTGGTGGG-AAAAAGCCTTTC-T-TG---T----G-A--AA--C---C-------A--A-AG
* *
2182578 CATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAATAATGGGG
233 CATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGG
* * * *
2182643 ATTAGTATGAGCATTCAAGTTTATCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGG
298 ATTAGTATGAGTATTCATGTTTGTCTTATTTAA-AGACAAACTTTGATTCTATCAAAAACGGTGG
* * * * * *
2182708 AAAG-AAAGGTTTTCTTGTGACATCAAAGCATCAATGTCATGTATCTTAATGAAGGGAATATTTT
362 AAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTA-CCTAATGAAAGGAATGTATT
* * *
2182772 TTGGCTTCACAATCTTGAAAAGAACTGAGAC-AGTTACGAGAATCGATT
426 TTGGCTTCCCAATCTTGAAAAGAATTGAGACTA-TTACGAGAATCGATG
* * * * * *
2182820 CTTCTTTTGTTTGAGGGATGAACATTG-TTTTAAAGGAAAATA-GGCAAAGAAAAGATTTTCATG
1 CTTGTCTTATTTAAGGGATGAACTTTGATTTT-AAGGAAAATAGGGCAAAGAAAAGATTTCCATG
* * *
2182883 CAAAAAAAAAT-ATTCAATATCATTTATCCTGA-GAAGGAGAATGTGTTTATGGTGCCTAATCAC
65 CAAAAGAAAATCA-TCAATATCATTTATCCTAATG-AGGAGAATGTGTTTATAGTGCCTAATCAC
* * * * * * *
2182946 AAAAATGGATGAAGATAATTACTATAATCAATGTTTATCTCA-TTGAGGCACAAACTCAGACTTT
128 -AAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT
* * * * *
2183010 ACAAAAATTAGG-GGGAAAAAAGCCTTTCCTGCGAAACAAAACCATCAATATGATGTATTCTAAT
192 ACAAAAATT-GGTGGG-AAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATGATGTATCCTAAT
* * ** * **
2183074 GAGAAGACAATATTTATGGTGCCTAATATTGAAAAGAATTGGGATTAGTATGAGTATTTTTGTTT
255 GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTT
* * * *
2183139 GTCTTATTTAAGAAACAATCTTTGATTCTATCAAAAACGGTTGAAAAAAAAGCTTTT-TT-TG--
320 GTCTTATTTAA-AGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGAC
* **
2183200 --C---G----AATGTCATGTATCATAAT-AAAGGGAAAATATTTTTGG-TTCCCAATCTTGAAA
384 ACCAAAGCATCAATGTCATGTA-CCTAATGAAA-GGAATGTA-TTTTGGCTTCCCAATCTTGAAA
** * *
2183254 AGAATAAAGACTATTA--TGAATTGATG
446 AGAATTGAGACTATTACGAGAATCGATG
* * * ** *
2183280 CTTTTCTTTTTTAGGGGATGAACTTTGATTTTAAGGAAAATATAGCAAAGAAAAGATTTTCATGC
1 CTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGC
* *
2183345 AAAA-AAAATCATTAATATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTGCCTAATC-CGAA
66 AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC-AA
* ** * * * * **
2183408 AATGAATAAAGATCATTACGGGAATCAATGTTTATCTCATTTTAGGCACAAACTTAGACTTTAGG
130 AATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA
* * * * *
2183473 AAAATTGGTGGGGAAAAAGCCTTTCTTGTAAAACCAAAACATCAGTATTATGTATCCTATTGAGA
195 AAAATTGGT-GGGAAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATGATGTATCCTAATGAGA
* * ** * *
2183538 AGACTATGTTTACGATGCCTCTTCCTGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCG
259 AGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCT
* * * *
2183603 TATTTAAGAGGCAAACTTTGATTCTAT-AAAAATGGTGGAAGGAAAAGGTTTTCTTGTGACACCA
324 TATTTAA-AGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGACACCA
*
2183667 AAGCATCAATGTCATGTATCCTAAT-AAAGGGAATGTGTTTTGGC-TCTCCAATCTTGAAAAGAA
388 AAGCATCAATGTCATGTA-CCTAATGAAA-GGAATGTATTTTGGCTTC-CCAATCTTGAAAAGAA
* * * * *
2183730 TAGTGACTTTTATGAGAATCAATG
450 TTGAGACTATTACGAGAATCGATG
* * *
2183754 TTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGGCATAGAAAAGATTTCCATGC
1 CTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGC
* *
2183819 AAAAGAAATTCATCAATATCATTGATCCTAATGAGGAGAATGTGTTTAT-GTTGCCTAATCACAA
66 AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAG-TGCCTAATCACAA
* * * * * *
2183883 AATGAATGAAGATCATTACTATAATCTATGCTTGTCTCATTTGAGGTAAGAAGTTAGACTTTACA
130 AATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA
* * * * * * * * *
2183948 AAAATTGGTGAGAAAAATACCTTTCTTGCGAATCCAAAGCATCAATATCATGTGTTCTAATAAAA
195 AAAATTGGTGGGAAAAA-GCCTTTCTTGTGAAACCAAAGCATCAATATGATGTATCCTAATGAGA
* * *
2184013 AGTCTA--TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATATTTATCT
259 AGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCT
** * ** * * *
2184076 TATTTTGGAGATAAACTTTGATTCTATCAAAATTGGTTGACAGAAAAACTTTTCTT-TG-----A
324 TA-TTTAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGACACCA
* * ** * *
2184135 ATG--TC-ATGT-A--T-CCTAAT-AAACGGAATGTGTTTTGGCTTCTTAATCTCGTAAAGAA-T
388 AAGCATCAATGTCATGTACCTAATGAAA-GGAATGTATTTTGGCTTCCCAATCTTGAAAAGAATT
*
2184191 GAAGACTATTACGAGAATCAATG
452 G-AGACTATTACGAGAATCGATG
* * * *
2184214 CTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGGTAAAGAAAAGATTTTCATGC
1 CTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGC
* * *
2184279 AAAA-AAAGTGATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATGGTGCCTAATCACAAA
66 AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAA
* * * * *
2184343 ATGAATGAAGATCATCACCATAATCCATGTTTGTCTCATTTGAGGCAAGAACTTATACTTTA-AA
131 ATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAA
* * *
2184407 GAAATTTGTGGGAAAAATGCCTTTCTTATGAAACCAAAGCATCAATATCG-TGTATCCTGATGAG
196 -AAATTGGTGGGAAAAA-GCCTTTCTTGTGAAACCAAAGCATCAATAT-GATGTATCCTAATGAG
*
2184471 AAGAC--TGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTTATGTTTGTC
258 AAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTC
* * * *
2184534 TTTTTTAAGAGACAAACTTTGATTTTATC-AAAACGGTTGAAAGAAAAGCTTTTCTT-T--TA--
323 TTATTTAA-AGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGACACC
* * * **
2184593 AATG--TC-ATGT-A--T-CCTAAT-AAAGGAAAAGTTTTTTTTGG-TTCCCAATCTTGAAATTA
387 AAAGCATCAATGTCATGTACCTAATGAAAGG--AA-TGTATTTTGGCTTCCCAATCTTGAAAAGA
* * *
2184649 ATGGAGACTATTATGAAAATCGATG
449 ATTGAGACTATTACGAGAATCGATG
* * * * *
2184674 CTTTTCTTTATTTATGGGATGAACTTTGATTTTTAGGAAAATAGGGTAAAGAAAAGATTTCAATG
1 CTTGTC-TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATG
* * * * *
2184739 CAAAAGAAAATAATCAATATCATTTATCCTAAAGAGGAGAATGTGCTTAGAGTGCATAATCACAA
65 CAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAA
* *
2184804 AATGAATGAAGATCATTACTAGAAT-CATGTTTGTCTCATTTGAGGCACGAGCTTAGACTTTACG
130 AATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA
* ** * * * * *
2184868 AAAATTGGTGGGAAAAAAGCTTTTCTTACGAAATCGATGCATCAATACGATGTATCCTAAAGAGA
195 AAAATTGGTGGG-AAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATGATGTATCCTAATGAGA
* * * *
2184933 AAACTATGTTTATAGTGTCCTAA-CCTGAAAAGATTGGGGAATAGTATGAGTATTCA----TGT-
259 AGACTATGTTTATGGTG-CCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTC
* * * * *
2184992 TTA---AGAGACAAACTTTGATTTTATCAAAAACGGT-GAAAGGAAAAGGTTTTCATATGACACC
323 TTATTTAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAA-GAAAAGCTTTTCTTGTGACACC
* * *
2185053 AAAGCATCAATGTCATGTATCCTAACT--AAGAGAATGTATTTTGGCTTCCCAGTCTAGAAAAAA
387 AAAGCATCAATGTCATGTA-CCTAA-TGAAAG-GAATGTATTTTGGCTTCCCAATCTTGAAAAGA
* *
2185116 ATAGAGACTGTTACGAGAATCGATG
449 ATTGAGACTATTACGAGAATCGATG
* * * * * * * *
2185141 CTTGTATTATTTAAGGGATGAACTTTCATTTTAAGAAAAATAAGACAAAAAAAAAAGATTTTCAC
1 CTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGC--AAAGAAAAGATTTCCAT
* * *
2185206 GCAAAAGAAAATCATCAATATCATTTATCCTAATGAAGA-ATATGTGCTTGTAGTGCCTAA-CTA
64 GCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA-ATGTGTTTATAGTGCCTAATC-A
* * *
2185269 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTATTTATTTGAGGCATGAACTTAGACTT
127 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGT-CTCATTTGAGGCACGAACTTAGACTT
* * * * ** * *
2185334 CACAAAAAATGGTGTGAAAAAAGCTTTTCTTGCAAAACAAAAGCATCAATATGATGTGTCCTAAT
191 TACAAAAATTGGTG-GGAAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATGATGTATCCTAAT
* * * ** *
2185399 GAGAAGATTACT-TTTATGGTGCCTAATCTTGAAAAAAATGACGATTAGTATGAGTATTTATGTT
255 GAGAAGACTA-TGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTT
* * * *
2185463 TGTCGTATTTTAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCCTCTGA
319 TGTCTTA-TTTAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGA
* * *
2185528 CACCAAAGCATCAATGTCACGCATCCTAATG-AAGGAA-ATATGCTTTGGCTTCCCAATCTTGAA
383 CACCAAAGCATCAATGTCATGTA-CCTAATGAAAGGAATGTAT--TTTGGCTTCCCAATCTTGAA
* * *
2185591 AAGAATGGAGA-TATTAC-ACAAATTGATG
445 AAGAATTGAGACTATTACGA-GAATCGATG
* ** * *
2185619 CTTTTCTTATTTAATTGATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTTCATGC
1 CTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGC
*
2185684 AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTGTAGTGCCTAATCACAAA
66 AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAA
* * * *
2185749 ATGAATGAAGATCATTACTAAAATTCATGTTTGTCTAATTTGAGGCACGAACCTAGACTTTACAA
131 ATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAA
* * * * *
2185814 AAATTTGTCAGAAAAAAGCCTTTCTT-TCGAAACCAATGCATCAATATGATATATCCTAATGAGA
196 AAATTGGT-GGGAAAAAGCCTTTCTTGT-GAAACCAAAGCATCAATATGATGTATCCTAATGAGA
* * * *** *
2185878 AAACTACGTTTATGGTGCCTAATCTTGAAAAGAACAAGGATTAGTATGAGTATTCATGTTTGTCG
259 AGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCT
* * * *
2185943 AATTTAAGAGACAAACTTTGATTCTATAAAAAATGGTGGAAAGTAAAGCTTTTCTTG
324 TATTTAA-AGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTG
2186000 CGAATGTGTT
Statistics
Matches: 4938, Mismatches: 834, Indels: 484
0.79 0.13 0.08
Matches are distributed among these distances:
438 3 0.00
439 222 0.04
444 3 0.00
445 3 0.00
446 10 0.00
447 2 0.00
448 2 0.00
449 6 0.00
450 4 0.00
451 19 0.00
452 20 0.00
453 10 0.00
454 32 0.01
455 25 0.01
456 6 0.00
457 6 0.00
458 39 0.01
459 375 0.08
460 661 0.13
461 203 0.04
462 158 0.03
463 59 0.01
464 15 0.00
465 19 0.00
466 55 0.01
467 48 0.01
468 121 0.02
469 24 0.00
470 119 0.02
471 10 0.00
472 58 0.01
473 121 0.02
474 346 0.07
475 649 0.13
476 651 0.13
477 259 0.05
478 55 0.01
479 103 0.02
480 4 0.00
483 1 0.00
484 1 0.00
486 2 0.00
487 1 0.00
488 1 0.00
489 2 0.00
491 2 0.00
492 1 0.00
498 1 0.00
499 4 0.00
500 60 0.01
501 301 0.06
502 36 0.01
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (473 bp):
CTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGC
AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAA
ATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAA
AAATTGGTGGGAAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAG
ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTA
TTTAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAG
CATCAATGTCATGTACCTAATGAAAGGAATGTATTTTGGCTTCCCAATCTTGAAAAGAATTGAGA
CTATTACGAGAATCGATG
Found at i:2182561 original size:27 final size:27
Alignment explanation
Indices: 2182531--2182584 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
2182521 GGGAAAAAAG
2182531 CCTTTCTTGTGAAATGAAAGCATCAAT
1 CCTTTCTTGTGAAATGAAAGCATCAAT
*
2182558 CCTTTCTTGTGAAATGAGAGCATCAAT
1 CCTTTCTTGTGAAATGAAAGCATCAAT
2182585 ATGATGTATC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (27 bp):
CCTTTCTTGTGAAATGAAAGCATCAAT
Found at i:2187268 original size:476 final size:474
Alignment explanation
Indices: 2186009--2187270 Score: 1468
Period size: 476 Copynumber: 2.7 Consensus size: 474
2185999 GCGAATGTGT
* * * * * * *
2186009 TTTGCCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGTATCGTTACTGGTCTTTTTTATGG
1 TTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCATTGCTTGTCTTATTTAAGG
* * *
2186074 GTTGAACTTTGATTTTAAGGAAAATAAGGCAAA-AAAATATTTCCATGCAAAAGAAAATCATCAA
66 GATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAA
*** * * *
2186138 TATCATTTATCCTAATGGGGAG-ATATGTTTATAGTACTTAATCACAAAATGAATGAAGATCATT
131 TATCATTTATCCTAAAAAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAAAGAAGATCATT
* * * *
2186202 AAC-ATAATCCATGTTTATCTCATTTGAGGAAAGAACTTAGA-TTTATGAATATTAGTGGGAAAA
196 -ACTAGAATCCATGTTTATCTCATTTGAGGAAAGAACTTAGACTTTACGAAAATTGGTGGGAAAA
* ** * * * ** * *
2186265 AAGCCTCACTTGTGAAACCAAAGCATCAATATGATGTATCTTGTTGAGAAGAATATGTTGATGGT
260 GATTCTTACTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTGATGGA
* * * * * *
2186330 GCCTAATCCTGCAAAGAATGGGGATTAGTATGAGTATTATTTTTTGTCATATTTAGGGGACAAAC
325 GCCTAATCATGAAAAGAATGGAGATTAGTAAGAGTATTATTGTTTGTCATATTTAAGGGACAAAC
* * * * * * *
2186395 TTTGTTTCAATCAAAAATGGAGGAAAGAAATGTTTTTCTTGTGAGATCAAAGCATCAATGTCATG
390 TTTGATTCAATCAAAAACGGAGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATG
** *
2186460 TTTCTTAAAGAGGGAATATG
455 TACCTTAAAGAGGGAACATG
* * * * * * *
2186480 TTTGGCTTCCTAATCTTGAAAAGAATGAAGACTATTACGAGAATTGA-TGTTTGTTTTAATTAAG
1 TTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAA-TCATTGCTTGTCTTATTTAAG
* * * *
2186544 GGATGAACTTTGATTTTATGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATAATTA
65 GGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCA
** * *
2186609 ATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAT-AAATGAAGATAA
130 ATATCATTTATCCTAAAAAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAAA-GAAGATCA
* * * * *
2186673 TTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTCAAACTTTACGAAAATTGGTGGGAAA
194 TTACTAGAATCCATGTTTATCTCATTTGAGGAAAGAACTTAGACTTTACGAAAATTGGTGGG--A
* * * *
2186738 AAAGCTT-TT-CTTGC-AGAACCAAAGCATCAATATGATGCAT-CTAAAAGAGAAGACTATGTTT
257 AAAGATTCTTACTTGCGA-AACCAAAGCATCAATATGATGTATCCT-AATGAGAAGACTATGTTG
* * * *
2186799 ATGGAGCGTTATCATGAAAAGAATGGAGATTTGTAAGAGTATT-TATGTTTGTCTTATTTAAGGG
320 ATGGAGCCTAATCATGAAAAGAATGGAGATTAGTAAGAGTATTAT-TGTTTGTCATATTTAAGGG
* *
2186863 ACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAAT
384 ACAAACTTTGATTCAATCAAAAACGGAGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAAT
* *
2186928 GTCATGTACCTTAATGAAGGGAACGTG
449 GTCATGTACCTTAAAG-AGGGAACATG
* * * * *
2186955 ATTTGGCTTCCCAATCTAGTAAAGAATGGATACTGTTAC-AGGAATCATTGCTTGTCATCTTTAA
1 -TTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGA-GAATCATTGCTTGTCTTATTTAA
* ** * *
2187019 GGGATGAACTTTGTTTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCAAACAAAAAAAAATCGTC
64 GGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATC
* * * *
2187084 AATATCTTTTATCCTAAAAAGGTGAATGTGTTTATAGTACCTAACCACAAAATGAAAAAAGATCA
129 AATATCATTTATCCTAAAAAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAAAGAAGATCA
*** *
2187149 TTACTAGAATCCATGTTTATCTCATTTGAGGTGCGAACTTAGACATTACGAAAATTGGTGGGAAA
194 TTACTAGAATCCATGTTTATCTCATTTGAGGAAAGAACTTAGACTTTACGAAAATTGGTGGGAAA
*
2187214 AGATTCTTACTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGGGAAGACTAT
259 AGATTCTTACTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTAT
2187271 CTTTCGGGTG
Statistics
Matches: 657, Mismatches: 114, Indels: 35
0.82 0.14 0.04
Matches are distributed among these distances:
471 78 0.12
472 54 0.08
473 69 0.11
474 182 0.28
475 14 0.02
476 254 0.39
477 6 0.01
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (474 bp):
TTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCATTGCTTGTCTTATTTAAGG
GATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAA
TATCATTTATCCTAAAAAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAAAGAAGATCATT
ACTAGAATCCATGTTTATCTCATTTGAGGAAAGAACTTAGACTTTACGAAAATTGGTGGGAAAAG
ATTCTTACTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTGATGGAG
CCTAATCATGAAAAGAATGGAGATTAGTAAGAGTATTATTGTTTGTCATATTTAAGGGACAAACT
TTGATTCAATCAAAAACGGAGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGT
ACCTTAAAGAGGGAACATG
Found at i:2187465 original size:221 final size:221
Alignment explanation
Indices: 2187082--2187508 Score: 538
Period size: 221 Copynumber: 1.9 Consensus size: 221
2187072 AAAAAAATCG
* * *
2187082 TCAATATCTTTTATCCTAAAAAGGTGAATGTGTTTATAGTACCTAACCACAAAATGAAAAAAGAT
1 TCAATATCATTTATCCTAAAAAGGAGAATGTGTTTATAGTACCTAACCAAAAAATGAAAAAAGAT
* ** * *
2187147 CATTACTAGAATCCATGTTTATCTCATTTGAGGTGCGAACTTAGACATTACGAAAATTGGTGGGA
66 CATTACTAGAATCCATGTTTATCTCAATTGAGGCACGAACTTAGACATTACAAAAAATGGTGGGA
* * * * ** *
2187212 AAAGATTCTTACTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGGGAAGACTATCTTTCG
131 AAAAACTCTTACTTGCGAAACCAAAGCATCAATACGATATATCCTAATGAAAAGACTATCTTTAG
2187277 GGTGCCTAATCCTGCAAAGAAAATAA
196 GGTGCCTAATCCTGCAAAGAAAATAA
** * **
2187303 TCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATTAAAAAAT-AAAATAAGA
1 TCAATATCATTTATCCTAAAAAGGAGAATGTGTTTATAGTACCTAACCAAAAAATGAAAA-AAGA
* * *
2187367 TTATTACTAGAATCCGTGTTTGTCTCAATT-ACGGCACGAACTTAGAC-TTCACAAAAAATGGTG
65 TCATTACTAGAATCCATGTTTATCTCAATTGA-GGCACGAACTTAGACATT-ACAAAAAATGGTG
* * * *
2187430 GGAAAAAAGCTCTT-CTTGCGAAACGAGAGCATCAATACGATATATCCTAATGAAAAGATTATTT
128 GGAAAAAA-CTCTTACTTGCGAAACCAAAGCATCAATACGATATATCCTAATGAAAAGACTATCT
*
2187494 TTATGGTGCCTAATC
192 TTAGGGTGCCTAATC
2187509 TTGAAATAAA
Statistics
Matches: 174, Mismatches: 28, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
220 7 0.04
221 163 0.94
222 4 0.02
ACGTcount: A:0.37, C:0.16, G:0.17, T:0.30
Consensus pattern (221 bp):
TCAATATCATTTATCCTAAAAAGGAGAATGTGTTTATAGTACCTAACCAAAAAATGAAAAAAGAT
CATTACTAGAATCCATGTTTATCTCAATTGAGGCACGAACTTAGACATTACAAAAAATGGTGGGA
AAAAACTCTTACTTGCGAAACCAAAGCATCAATACGATATATCCTAATGAAAAGACTATCTTTAG
GGTGCCTAATCCTGCAAAGAAAATAA
Found at i:2187930 original size:697 final size:696
Alignment explanation
Indices: 2186595--2187955 Score: 1693
Period size: 697 Copynumber: 2.0 Consensus size: 696
2186585 TTTCCATGCA
* *
2186595 AAAGAAAATAATTAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAA
1 AAAGAAAATAATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAAAAAA
* * * *
2186660 TAAATGAAGATAATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTCAAACTTTACGAA
66 TAAATGAAGATAATTACTAGAATCCATGTTTGTCTCAATTGAGGCACGAACTCAAACTTCACAAA
* * * * *
2186725 AATTGGTGGGAAAAAAGCTTTTCTTGCAGAACCAAAGCATCAATATGATGCATCTAAAAGAGAAG
131 AAATGGTGGGAAAAAAGCTCTTCTTGCAGAACCAAAGCATCAATACGATACATCTAAAAGAAAAG
* * * * * * *
2186790 ACTATGTTTATGGAGCGTTATCATGAAAAGAATGGAGATTTGTAAGAGTATTTATGTTTGTCTTA
196 ACTATGTTTATGGAGCCTAATCATGAAAAGAACGGAGATTAGTAAGAGTATTCATGTTAGTCGTA
* *
2186855 TTTAAGGGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAA
261 TTTAAGAGACAAACTTGGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAA
* ** ** * * *
2186920 GCATCAATGTCATGTACCTTAATGAAGGGAACGTGATTTGGCTTCCCAATCTAGTAAAGAATGGA
326 GCATAAATGTCATGTACCTTAACAAAGAAAACGGGATTTGGCTTCCCAATCTAGAAAAGAATGCA
* * * * *
2186985 TACTGTTACAGGAATCATTGCTTGTCATCTTTAAGGGATGAACTTTGTTTTTAAGGAAAATAGGG
391 GACTGTTACAGGAATCATCGCTTGTCATATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGG
* * *
2187050 CAAAGAAAAGATTTCCAAACAAAAAAAAATCGTCAATATCTTTTATCCTAAAAAGGTGAATGTGT
456 CAAAGAAAAGATTTCCAAACAAAAAAAAATCATCAATATCATTTATCCTAAAAAGGAGAATGTGT
*
2187115 TTATAGTACCTAACCACAAAATGAAAAAAGATCATTACTAGAATCCATGTTTATCTCATTTGAGG
521 TTATAGTACCTAACCACAAAATGAAAAAAGATCATTACTAAAATCCATGTTTATCTCATTTGA-G
* ** * * **
2187180 TGCGAACTTAGACATTACGAAAATTGGTGGGAAAAGATTCTTACTTGCGAAACCAAAGCATCAAT
585 TGCGAACCTAGACATTACGAAAATTGGACGAAAAACAGCCTTACTTGCGAAACCAAAGCATCAAT
*
2187245 ATGATGTATCCTAATGGGAAGACTATCTTTCGGGTGCCTAATCCTGC
650 ATGATATATCCTAATGGGAAGACTATCTTTCGGGTGCCTAATCCTGC
*
2187292 AAAGAAAATAATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATTAAAAAA
1 AAAGAAAATAATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAAAAAA
* * * *
2187357 TAAAAT-AAGATTATTACTAGAATCCGTGTTTGTCTCAATT-ACGGCACGAACTTAGACTTCACA
66 T-AAATGAAGATAATTACTAGAATCCATGTTTGTCTCAATTGA-GGCACGAACTCAAACTTCACA
* * * *
2187420 AAAAATGGTGGGAAAAAAGCTCTTCTTGC-GAAACGAGAGCATCAATACGATATATCCT-AATGA
129 AAAAATGGTGGGAAAAAAGCTCTTCTTGCAG-AACCAAAGCATCAATACGATACAT-CTAAAAGA
* * * *
2187483 AAAGATTATTTTTATGGTGCCTAATCTTGAAATA-AAC-GAGGATTAGTATA-AGTATTCATGTT
192 AAAGACTATGTTTATGGAGCCTAATCATGAAA-AGAACGGA-GATTAGTA-AGAGTATTCATGTT
* *
2187545 AGTCGTATTTTAGAGACAAACTTGGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCTA
254 AGTCGTATTTAAGAGACAAACTTGGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGA
* * ** * * * *
2187610 TACCAAAGCATAAATGTTATGT-TTTCTAACAAAGAAAATGGGCTTTGGCTTCCTAATCTTGAAA
319 CACCAAAGCATAAATGTCATGTACCT-TAACAAAGAAAACGGGATTTGGCTTCCCAATCTAGAAA
** * * * *
2187674 AGAATGCAGACTGTT-GTGTGAATTGA-CGCTTTTCTTATTTAAGGGATGAACTTTGATTTTGAG
383 AGAATGCAGACTGTTACAG-GAA-TCATCGCTTGTCATATTTAAGGGATGAACTTTGATTTTAAG
* ** * *
2187737 AAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAA
446 AAAAATAGGGCAAAGAAAAGATTTCCAAACAAAAAAAAATCATCAATATCATTTATCCTAA-AAA
* * * ** * *
2187802 -GAGAATGTGTTTGTAGTGCCTAATCACAAAATGAATGAAGATCATTACTAAAATCCGTGTTTGT
510 GGAGAATGTGTTTATAGTACCTAACCACAAAATGAAAAAAGATCATTACTAAAATCCATGTTTAT
* * *
2187866 CTCATTTGA-TGCATGAACCTAGACATTACTAAAATTGGACGAAAAACAGCCTTTCTTTCGAAAC
575 CTCATTTGAGTGC--GAACCTAGACATTACGAAAATTGGACGAAAAACAGCCTTACTTGCGAAAC
**
2187930 CACTGCATCAATATGATATATCCTAA
638 CAAAGCATCAATATGATATATCCTAA
2187956 AGAGAAGATT
Statistics
Matches: 560, Mismatches: 91, Indels: 26
0.83 0.13 0.04
Matches are distributed among these distances:
695 3 0.01
696 6 0.01
697 539 0.96
698 12 0.02
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (696 bp):
AAAGAAAATAATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAAAAAA
TAAATGAAGATAATTACTAGAATCCATGTTTGTCTCAATTGAGGCACGAACTCAAACTTCACAAA
AAATGGTGGGAAAAAAGCTCTTCTTGCAGAACCAAAGCATCAATACGATACATCTAAAAGAAAAG
ACTATGTTTATGGAGCCTAATCATGAAAAGAACGGAGATTAGTAAGAGTATTCATGTTAGTCGTA
TTTAAGAGACAAACTTGGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAA
GCATAAATGTCATGTACCTTAACAAAGAAAACGGGATTTGGCTTCCCAATCTAGAAAAGAATGCA
GACTGTTACAGGAATCATCGCTTGTCATATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGG
CAAAGAAAAGATTTCCAAACAAAAAAAAATCATCAATATCATTTATCCTAAAAAGGAGAATGTGT
TTATAGTACCTAACCACAAAATGAAAAAAGATCATTACTAAAATCCATGTTTATCTCATTTGAGT
GCGAACCTAGACATTACGAAAATTGGACGAAAAACAGCCTTACTTGCGAAACCAAAGCATCAATA
TGATATATCCTAATGGGAAGACTATCTTTCGGGTGCCTAATCCTGC
Found at i:2189414 original size:438 final size:438
Alignment explanation
Indices: 2188565--2189423 Score: 1104
Period size: 438 Copynumber: 2.0 Consensus size: 438
2188555 GGGAATATGG
* * * * *
2188565 TTGGCTTCCCAATCCTGAAAAGAATGGAGACTGTTACGACAATTGATGTTTGTCTTAATTAAGGG
1 TTGGATTCCCAATCCTGAAAAAAATGGAGACTGTTACGACAATCGATGCTTATCTTAATTAAGGG
* *
2188630 ATAAACTTTGATTTTATGAAAAATAGGGCAAAGAAAAGATTTCCAAGCATAAAAAAATAATTAAT
66 ATAAACTTTGATTTTAAGAAAAATAAGGCAAAGAAAAGATTTCCAAGCATAAAAAAATAATTAAT
* * * * * * * *
2188695 ACCATTTATTCTAGTGAGGAGAATGTGATTATAGTGCCTAATCACAAAATGAATGAAGATAATTA
131 ACCATGTATCCCAATGAAGAGAATGTGATTATAGTACCTAATCACAAAATAAAAGAAGATAATTA
* *
2188760 CTAGAATCCATGTTTGTCTCATTTGGGGCATGAACTCAGACTTTGCGAAAATAGGTGGGAAAAAA
196 CTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTCAGACTTTACGAAAATAGGTGGGAAAAAA
* * * *
2188825 GCTTTTCTTGCAAAACCAAAGCATCAATATGATGCATCTAAAAGAGAAGACTATGTTTATGGAGC
261 GCCTTACTTCCAAAACCAAAGCATCAACATGATGCATCTAAAAGAGAAGACTATGTTTATGGAGC
* * * **
2188890 CTTATCCTGAAAAGAATGGGGATTTGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTT
326 CTAATCCTAAAAAGAATAGGGATTTGTATGAGTATTCATGTTTGTCGAATTTAAGAGACAAACTT
* *
2188955 TGATTCTATCTAAAAGGTGGAAAGAAAAGCTCTTCTTGCGAATTTGTT
391 TGATTCCATCAAAAAGGTGGAAAGAAAAGCTCTTCTTGCGAATTTGTT
* * *
2189003 TTGGATTCCCAATCTTGAAAAAAATGGAGACTGTTACGAGAATCGATGCTTATCTGT-TTTAAGG
1 TTGGATTCCCAATCCTGAAAAAAATGGAGACTGTTACGACAATCGATGCTTATCT-TAATTAAGG
* * * * *
2189067 GATGAACTTTGATTTTAAGGAAAATAAGGTAAAGAAAAGATTTCTATGCA-AAAAAAA-AATCTT
65 GATAAACTTTGATTTTAAGAAAAATAAGGCAAAGAAAAGATTTCCAAGCATAAAAAAATAA--TT
* * * * *
2189130 AAATATCATGTATCCCAATGAAGCGAATGTGTTTATGGTACCTAATCACAAAATAAAAGAAGATC
128 -AATACCATGTATCCCAATGAAGAGAATGTGATTATAGTACCTAATCACAAAATAAAAGAAGATA
* * * *
2189195 ATTACTAGAATCCATGTTTGTCTCATTTGAGGCA-GAACTTAGACTTTATGAATATTGGTGGGAA
192 ATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTCAGACTTTACGAAAATAGGTGGGAA
* * **
2189259 AAAAGCCTTACTTCCAAAACCAAAGCTTCAACATGATGTATCCT-ATTGAGAAGAGC-ATGTTTA
257 AAAAGCCTTACTTCCAAAACCAAAGCATCAACATGATGCAT-CTAAAAGAGAAGA-CTATGTTTA
* * * * *
2189322 TGGTGCCTAATCC-AACAAAGAATAGGGATTTGTATGAGTATTCTTTTTTGTCGAATTT-AGGGG
320 TGGAGCCTAATCCTAA-AAAGAATAGGGATTTGTATGAGTATTCATGTTTGTCGAATTTAAGAGA
2189385 CAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCT
384 CAAACTTTGATTCCATCAAAAA-GGTGGAAAGAAAAGCT
2189424 TTTGTTGTGA
Statistics
Matches: 359, Mismatches: 54, Indels: 16
0.84 0.13 0.04
Matches are distributed among these distances:
436 2 0.01
437 31 0.09
438 238 0.66
439 88 0.25
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (438 bp):
TTGGATTCCCAATCCTGAAAAAAATGGAGACTGTTACGACAATCGATGCTTATCTTAATTAAGGG
ATAAACTTTGATTTTAAGAAAAATAAGGCAAAGAAAAGATTTCCAAGCATAAAAAAATAATTAAT
ACCATGTATCCCAATGAAGAGAATGTGATTATAGTACCTAATCACAAAATAAAAGAAGATAATTA
CTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTCAGACTTTACGAAAATAGGTGGGAAAAAA
GCCTTACTTCCAAAACCAAAGCATCAACATGATGCATCTAAAAGAGAAGACTATGTTTATGGAGC
CTAATCCTAAAAAGAATAGGGATTTGTATGAGTATTCATGTTTGTCGAATTTAAGAGACAAACTT
TGATTCCATCAAAAAGGTGGAAAGAAAAGCTCTTCTTGCGAATTTGTT
Found at i:2194216 original size:474 final size:474
Alignment explanation
Indices: 2192595--2195314 Score: 3085
Period size: 474 Copynumber: 5.7 Consensus size: 474
2192585 CTTTTCTTAC
* * *
2192595 GAATGTGTTCTGGCTTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGAT-ATTGATCT
1 GAATGTGTTTTGGCTTCCCAATCTTGAAAA-AATGGAGACTGTTACGAGAATCGATGCTTG-TCT
* ** * *
2192659 TTTTTAAGGGTTGAA-TTTCAATTTTAAGGAAAATA-AGCAAAGAAAAGATTTCAATGCAAAAGA
64 TTTTTAAGGGATGAACTTTGTATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAA-A
* * *
2192722 AAATCATCAATACCATTTATCCTAATGAGGAG-ATGTGTTTATAGTACCTAATCACAAAATGAAT
128 AAATCATCAATATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
* * * * * * * * *
2192786 GAAGATCATTACCAAAATCCATGTTTGTCTTACTTGAGACAAGAACTTAGACTTTACGAATATTA
193 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTG
* * * * * *
2192851 GTGGGAAAAAAGCCTTACTTGTGAAACCAAAGCATCAATATGATGTATCTTATTGAGAAGAATAA
258 GTGGGAAAAAAGCTTTACTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTAT
* * * * * * *
2192916 GTTGATGGTGCTTAATCTTGCAAAGAATGGGGATTAGTATGAGTATTCTTTTTTGTCGTATTTAG
323 CTTTATGGTGCCTAATCCTGCAAAGAATGAGGATTAGTATGAGTATTCATTTTTGTCATATTTAG
* * * * *
2192981 GAGACAAACTTTGTTTTTATCAAAAATGGTGGAAAGAAAAGCTTTTCCTACGACACCAAAGCATC
388 GAGACAAACTTTGATTCTATCAAAAATGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
* * * * *
2193046 ACTGTCACGTTTCCTCAGGAGG
453 AATGTCATGTATCCTAATGAGG
* * * * *
2193068 GAATATG-TTTGGCTTCCCAATCATGAAAAGAAT-TAGGACTGTTACGAGAATTGATGTTTGT-T
1 GAATGTGTTTTGGCTTCCCAATCTTGAAAA-AATGGA-GACTGTTACGAGAATCGATGCTTGTCT
* * * * *
2193130 TTAATTAAGAGATGAACTTTG-ATTTTATGAAAAATAGGGCAAAAAAAAGATTTCCATGCAAAAG
64 TT-TTTAAGGGATGAACTTTGTATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAA-
* * * * *
2193194 AAAATAATTAATATCATTTATCCCAATGAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAA
127 AAAATCATCAATATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * *
2193259 TGAAGA-CAATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTCAGACTTTACGAAAAT
192 TGAAGATC-ATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAT
* * * * *
2193323 TAGTGAGAAAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATGATGCAT-CTAAATGAGAAGAC
256 TGGTGGGAAAAAAGCTTTACTTGCGAAACCAAAGCATCAATATGATGTATCCT-AATGAGAAGAC
* * * * * * * * *
2193387 TATGTTTATGGAGCCTTATCCTGAAAAGAATGGGGATTTGTATGAGTACTCATGTTTGTCTTATT
320 TATCTTTATGGTGCCTAATCCTGCAAAGAATGAGGATTAGTATGAGTATTCATTTTTGTCATATT
* * * * * *
2193452 TAAGAGATAAACTTTGATTCTATCAAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAATACTAAAG
385 TAGGAGACAAACTTTGATTCTATC-AAAAATGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAG
*
2193517 CATCAATGTCATGTA-CTTTAATGAAGG
449 CATCAATGTCATGTATC-CTAATG-AGG
* * * * * * * * *
2193544 GAACGTGCTTTGGCTTGCCAATCTAGTAAAGAATGGATACTGTTATGGGAATCGTTGCTTGTCTT
1 GAATGTGTTTTGGCTTCCCAATCTTG-AAAAAATGGAGACTGTTACGAGAATCGATGCTTGTCTT
* * *
2193609 CTTTAAGGGATGAACTTTGT-TTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCAAGCAAAAAAA
65 TTTTAAGGGATGAACTTTGTATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAAAA
* * * * * * * * *
2193673 AGCATCAATATCTTTTATCCTAAAAAGGCA-AATATGTTTATAGTGCCTTAGCCCAAATTGAAAG
130 ATCATCAATATCATTTATCCTAAAGAGG-AGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
* * * * *
2193737 AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCGCGAAGTTAGACATTACGAAACTTGG
194 AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG
** *
2193802 TGGGAAAAATTC-TTACTTGCGAAACCAAAGCATCAATATGATGTATCCTAACGAGAAGACTATC
259 TGGGAAAAAAGCTTTACTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATC
* * *
2193866 TTTATGGTGCTTAATCCTGCAAAGAATGAGGATTAGTTTGAGTATTCATTTTTGTCATATTTTGG
324 TTTATGGTGCCTAATCCTGCAAAGAATGAGGATTAGTATGAGTATTCATTTTTGTCATATTTAGG
* * * * *
2193931 AGATAAACTTTGATTCTATTAAAAACGGTGAAAAGAAATGCTTTTCTTGCGACACCAAAGCAACA
389 AGACAAACTTTGATTCTATCAAAAATGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCA
*
2193996 ATATCATGTATCCTAATGAGG
454 ATGTCATGTATCCTAATGAGG
* * * * *
2194017 GAATGTTTTTTGGCTTCCTAATCTTGAAAAAATGGAGATTGTTATGAGAATCGATGCTTGTTTTT
1 GAATGTGTTTTGGCTTCCCAATCTTGAAAAAATGGAGACTGTTACGAGAATCGATGCTTG-TCTT
*
2194082 TTTTAAGGGATGAACTTT-TATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGAAAAATAA
65 TTTTAAGGGATGAACTTTGTATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAA-AA
* * * * *
2194146 AATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTTTAGTGCCTAATTACAACATGAATG
129 AATCATCAATATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
* * * * *
2194211 AAGATCTTTACTAGAATCCATGTTTGTCTCTTTTGAGGCACGAAGTTAGACTTTGCAAAAAATGG
194 AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG
* * ** *
2194276 TGGGAAAAAAGCTTTTCTTGTGAAATGAAAGCATCAATATGATGTATCCTAATGAGAAGAGTATC
259 TGGGAAAAAAGCTTTACTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATC
* * * * *
2194341 TTTATGGTGCCTAATCTTGCAAAGAACG-GGATTAGTTTGAGTATTCGTTTTTGTCATATTTTGG
324 TTTATGGTGCCTAATCCTGCAAAGAATGAGGATTAGTATGAGTATTCATTTTTGTCATATTTAGG
* * *
2194405 AGACAAAACTTTGATTCTATC-AAAACGATGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCAAC
389 AGAC-AAACTTTGATTCTATCAAAAATGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
* ** * *
2194469 AATATGTTGTATCTTAATGAAG
453 AATGTCATGTATCCTAATGAGG
* * *
2194491 GAATGTTTTTTGGCTTCCCAATCTTAAAAAAATGGAGACTGTTATGAGAATCGATGCTTGT-TTT
1 GAATGTGTTTTGGCTTCCCAATCTTGAAAAAATGGAGACTGTTACGAGAATCGATGCTTGTCTTT
* * *
2194555 TTTAAGGGATGAACTTT-TATTTTAAGGAAAATAGGGCCAAAAAAAAAATTTTCATGCAAAATAA
66 TTTAAGGGATGAACTTTGTATTTTAAGGAAAATAGGG-CAAAGAAAAGATTTCCATGCAAAA-AA
* ** * * *
2194619 AATCATCAATACCATTTATCCTAAAGAGGAGAATGCATTTTTAGTGCCTAATTACAACATGAATG
129 AATCATCAATATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
* * * * * *
2194684 AAGATCTTTACTAAAATCCATGTTTGTCTCTTTTGAGGCACGAAGTTAGACTTTGCAAAAAATGG
194 AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG
* * ** * *
2194749 TGGGAAAAAAGCTTTTCTTGTGAAATGAAAGCATCAATATGATGTATCCTAATGAGAAGAGTATG
259 TGGGAAAAAAGCTTTACTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATC
* * * * * ** * * *
2194814 TTTCTAGTGCCTAATCTTG-AAAGGAT-AGGGATTTGTATGAGTATTCAAGTTTATCTTATTTAA
324 TTTATGGTGCCTAATCCTGCAAAGAATGA-GGATTAGTATGAGTATTCATTTTTGTCATATTTAG
2194877 GAGACAAACTTTGATTCTATCAAAAATGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
388 GAGACAAACTTTGATTCTATCAAAAATGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
2194942 AATGTCATGTA-CCTTAATGAAGG
453 AATGTCATGTATCC-TAATG-AGG
* * * * ** * * * *
2194965 GAACGTGCTTTGGCTTCCTAATCTAGTAAGGAATGGATACTGTTACGGGAATAGTTGCTTGTCTT
1 GAATGTGTTTTGGCTTCCCAATCTTG-AAAAAATGGAGACTGTTACGAGAATCGATGCTTGTCTT
* * * * *
2195030 TTTTAAGGGATAAACTTTGT-TTTTAAGGAAAATTGGGCAAATAAAGGATTTCCAAGCAAAAAAA
65 TTTTAAGGGATGAACTTTGTATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAAAA
* * * * *
2195094 ATCATCAATATCTTTTATCCTAAAAAGGTGAATGTGTGTTATAGTGCCTAACCACAAAATGAAAG
130 ATCATCAATATCATTTATCCTAAAGAGGAGAATGTGT-TTATAGTGCCTAATCACAAAATGAATG
* ** * *
2195159 AAAATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCGTGAACCTAGACATTACAAAAATTGG
194 AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG
* * * * *
2195224 TGGGAAAAAA-TTCTTACTTGCAAAACCAAAGAAACAATATGATGTATCCTAATTAGAAGACTAT
259 TGGGAAAAAAGCT-TTACTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTAT
2195288 CTTTATGGTGCCTAATCCTGCAAAGAA
323 CTTTATGGTGCCTAATCCTGCAAAGAA
2195315 AATAATCAAT
Statistics
Matches: 1924, Mismatches: 285, Indels: 73
0.84 0.12 0.03
Matches are distributed among these distances:
471 4 0.00
472 156 0.08
473 462 0.24
474 594 0.31
475 444 0.23
476 166 0.09
477 92 0.05
478 6 0.00
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (474 bp):
GAATGTGTTTTGGCTTCCCAATCTTGAAAAAATGGAGACTGTTACGAGAATCGATGCTTGTCTTT
TTTAAGGGATGAACTTTGTATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAAAAA
TCATCAATATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAA
GATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTG
GGAAAAAAGCTTTACTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATCTT
TATGGTGCCTAATCCTGCAAAGAATGAGGATTAGTATGAGTATTCATTTTTGTCATATTTAGGAG
ACAAACTTTGATTCTATCAAAAATGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAAT
GTCATGTATCCTAATGAGG
Found at i:2194331 original size:158 final size:157
Alignment explanation
Indices: 2194140--2194828 Score: 420
Period size: 158 Copynumber: 4.4 Consensus size: 157
2194130 TTTCCATGAA
* * *
2194140 AAATAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTTTAGTGCCTAATTACAACA
1 AAATAAAAGCATCAATATGATGTATCCTAATGAGGAGAATATGTTTTTAGTGCCTAATTACAA-A
*
2194205 TGAATGAAGATCT-TTACT-AGAATCCATGTTTGTCTCTTTTGAGGCACGAAGTTAGACTTTGCA
65 -GAATGAAGATCTGTTA-TGAGAATCCATGTTTGTCTCTTTTGAGGCACGAACTTAGACTTTGCA
** *
2194268 AAAAATGGTGGGAAAAAAGCTTTTCTTGTG
128 AAAAATGGTGAAAAAAAAGCTTTTCTTGCG
* * * * * * *
2194298 AAATGAAAGCATCAATATGATGTATCCTAATGAGAAGAGTATCTTTATGGTGCCTAATCTTGCAA
1 AAATAAAAGCATCAATATGATGTATCCTAATGAGGAGAATATGTTTTTAGTGCCTAA--TTACAA
* * * * * * * * * *
2194363 AGAACG-GGAT-TAGTT-TGAGTATTCGTTTTTGTCATATTTTGGAGACA-AAACTTTGA--TT-
64 AGAATGAAGATCT-GTTATGAGAATCCATGTTTGTC-TCTTTT-GAGGCACGAACTTAGACTTTG
* * *
2194421 CTATCAAAACGATGAAAAGAAAAGCTTTTCTTGCG
126 C-A-AAAAATGGTGAAAA-AAAAGCTTTTCTTGCG
* ** * * * * * * * *
2194456 ACACCAAAGCAACAATATGTTGTATCTTAATGAAG-GAATGT-TTTTTGGCTTCCCAATCTTA-A
1 AAATAAAAGCATCAATATGATGTATCCTAATGAGGAGAATATGTTTTTAG-TGCCTAA--TTACA
* * * * * * * * ** *
2194518 AAAAATGGAGA-CTGTTATGAGAATCGATGCTTGT-TTTTTTAAGGGATGAACTTTTATTTTAAG
63 AAGAATGAAGATCTGTTATGAGAATCCATGTTTGTCTCTTTTGAGGCACGAACTTAGACTTT--G
* * * ** ** * *
2194581 GAAAATAGGGCCAAAAAAAAAATTTTCATGCA
126 CAAAAAATGGTGAAAAAAAAGCTTTTCTTGCG
* ** * * ***
2194613 AAATAAAATCATCAATACCATTTATCCTAAAGAGGAGAATGCATTTTTAGTGCCTAATTACAACA
1 AAATAAAAGCATCAATATGATGTATCCTAATGAGGAGAATATGTTTTTAGTGCCTAATTACAA-A
* *
2194678 TGAATGAAGATCT-TTACT-AAAATCCATGTTTGTCTCTTTTGAGGCACGAAGTTAGACTTTGCA
65 -GAATGAAGATCTGTTA-TGAGAATCCATGTTTGTCTCTTTTGAGGCACGAACTTAGACTTTGCA
** *
2194741 AAAAATGGTGGGAAAAAAGCTTTTCTTGTG
128 AAAAATGGTGAAAAAAAAGCTTTTCTTGCG
* * * *
2194771 AAATGAAAGCATCAATATGATGTATCCTAATGAGAAGAGTATGTTTCTAGTGCCTAAT
1 AAATAAAAGCATCAATATGATGTATCCTAATGAGGAGAATATGTTTTTAGTGCCTAAT
2194829 CTTGAAAGGA
Statistics
Matches: 383, Mismatches: 120, Indels: 56
0.69 0.21 0.10
Matches are distributed among these distances:
154 3 0.01
155 13 0.03
156 23 0.06
157 90 0.23
158 193 0.50
159 35 0.09
160 26 0.07
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.33
Consensus pattern (157 bp):
AAATAAAAGCATCAATATGATGTATCCTAATGAGGAGAATATGTTTTTAGTGCCTAATTACAAAG
AATGAAGATCTGTTATGAGAATCCATGTTTGTCTCTTTTGAGGCACGAACTTAGACTTTGCAAAA
AATGGTGAAAAAAAAGCTTTTCTTGCG
Found at i:2195491 original size:221 final size:222
Alignment explanation
Indices: 2195085--2195524 Score: 570
Period size: 221 Copynumber: 2.0 Consensus size: 222
2195075 GGATTTCCAA
* * *
2195085 GCAAAAAAAATCATCAATATCTTTTATCCTAAAAAGGTGAATGTGTGTTATAGTGCCTAACCACA
1 GCAAAAAAAATAATCAATATCATTTATCCTAAAAAGGAGAATGTGTGTTATAGTGCCTAACCACA
* * * * **
2195150 AAATGAAAGAAAATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCGTGAACCTAGACATTAC
66 AAATGAAAAAAAATCATTACTAGAATCCATATTTCTCTCAATTGAGGCACGAACCTAGACATTAC
* * *
2195215 AAAAATTGGTGGGAAAAAATTCTTACTTGCAAAACCAAAGAAACAATATGATGTATCCTAATTAG
131 AAAAAATGGTGGGAAAAAATTCTTACTTGCAAAACCAAAGAAACAATACGATGTATCCTAATGAG
2195280 AAGACTA-TCTTTATGGTGCCTAATCCT
196 AAGACTACT-TTTATGGTGCCTAATCCT
* *** *
2195307 GCAAAGAAAATAATCAATATCATTTATCCTAATGTGGAGAATGTGT-TTATAGTGCCTAATCACA
1 GCAAAAAAAATAATCAATATCATTTATCCTAAAAAGGAGAATGTGTGTTATAGTGCCTAACCACA
*
2195371 AAAT-AAAAAAAGATTATTACTAGAATCCATATTTCTCTCAATTGAGGCACGAA-CTCAGAC-TT
66 AAATGAAAAAAA-ATCATTACTAGAATCCATATTTCTCTCAATTGAGGCACGAACCT-AGACATT
* * * *
2195433 CACAAAAAATGGTGGGAAAAAAGCTT-TT-CTTGCGAAACGAAAGTATCAATACGATGTATCCTA
129 -ACAAAAAATGGTGGGAAAAAA--TTCTTACTTGCAAAACCAAAGAAACAATACGATGTATCCTA
*
2195496 ATGAGAAGATTACTTTTATGGTGCCTAAT
191 ATGAGAAGACTACTTTTATGGTGCCTAAT
2195525 GTTGAAAAGA
Statistics
Matches: 189, Mismatches: 23, Indels: 13
0.84 0.10 0.06
Matches are distributed among these distances:
220 10 0.05
221 135 0.71
222 42 0.22
223 2 0.01
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.29
Consensus pattern (222 bp):
GCAAAAAAAATAATCAATATCATTTATCCTAAAAAGGAGAATGTGTGTTATAGTGCCTAACCACA
AAATGAAAAAAAATCATTACTAGAATCCATATTTCTCTCAATTGAGGCACGAACCTAGACATTAC
AAAAAATGGTGGGAAAAAATTCTTACTTGCAAAACCAAAGAAACAATACGATGTATCCTAATGAG
AAGACTACTTTTATGGTGCCTAATCCT
Found at i:2197411 original size:443 final size:439
Alignment explanation
Indices: 2196585--2197434 Score: 1107
Period size: 443 Copynumber: 1.9 Consensus size: 439
2196575 TGTGTCTAAC
* * * * *
2196585 TTCCCAATCTTGAAAAAAATGGAGACTGTTGCGAGAATTGATGTTTGTCTTAATTAGGGGATGAA
1 TTCCCAATCTTGAAAAAAATGGAGACTGTTACGAGAATCGATGCTTATCTTAATTAAGGGATGAA
** * * * * * *
2196650 CTTTGATTTTATTGAAAATAGGACAAAGAAATGATTTCCAGGCAAAAGAAAATAATTAATATCAT
66 CTTTGATTTTAAGGAAAATAGGACAAACAAAAGATTTCCAGGAAAAAGAAAATAATCAAAAACAT
* * ** * *
2196715 TTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATAATTACTAGA
131 TTATCCCAATGAGGAAAATGCATTTATACTACCTAATCACAAAATGAATGAAGATAATTACTAGA
* * * * *
2196780 ATCGATGTTTGTCTCATTTGAGATACGAACTCAGACTTTAAGAAAATTGGTGGGGAAAAAGCTTT
196 ATCCATATTTGTCTCATTTGAGACACGAACTCAGACTTTAAGAAAATTGGTGGGAAAAAAGCCTT
* * * *
2196845 TCTTGCGAAACCAAAGCATCAATATGATGCATCTAAAAGAGAAGACTATGTTTATGGAGCTTTAT
261 ACTTGCAAAACCAAAGCATCAATATGATGCATCTAAAAGAGAAGACTATGTTTATGGAGCCTAAT
* * *
2196910 CCTGAAAAAAATGGGGATTTGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGACT
326 CCTGAAAAAAATAGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGA-T
*
2196975 TGACTTATCAAAAATGGTGGAGAAAAAAGCTTAACTTGCGAATGTGTTTTGGA
390 T--C-TATCAAAAACGGTGGAGAAAAAAGCTTAACTTGCGAATGTGTTTTGGA
** *
2197028 TTCCCAATCTTGAAAAAAATGGAGACTGTTACGAGAATCGATGCTTATCTTTTTTAAGGGATTAA
1 TTCCCAATCTTGAAAAAAATGGAGACTGTTACGAGAATCGATGCTTATCTTAATTAAGGGATGAA
* *
2197093 CTTTGATTTTAAGGAAAATAAGGA-AAACAAAAGATTTCCATGAAAAAGAAAATCATCAAAAAC-
66 CTTTGATTTTAAGGAAAAT-AGGACAAACAAAAGATTTCCAGGAAAAAGAAAATAATCAAAAACA
*
2197156 TTGTATCCCAATGAGGAAAATGCATTTATTACTACCTAATCACAAAATGAATGAAGATCATTACT
130 TT-TATCCCAATGAGGAAAATGCATTTA-TACTACCTAATCACAAAATGAATGAAGATAATTACT
* * * *
2197221 AGAATCCATATTTGTCTCATTTGAGGCA-GAACTTAGACTTTATGAATATTGGTGGGAAAAAAGC
193 AGAATCCATATTTGTCTCATTTGAGACACGAACTCAGACTTTAAGAAAATTGGTGGGAAAAAAGC
* * * ** * * *
2197285 CTTAGTTGCAAAACCAAAGCTTCAATATGATGTATCCT-ATTGAGAATAGTATGTTTATGGCGCC
258 CTTACTTGCAAAACCAAAGCATCAATATGATGCAT-CTAAAAGAGAAGACTATGTTTATGGAGCC
* * *
2197349 TAATCCT-ACAAAGAATAGGGATTAGTATGAGTATTCTTTTTTGTCGTATTTAAGAGACAAACTT
322 TAATCCTGA-AAAAAATAGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAACTT
2197413 TGATTCTATCAAAAACGGTGGA
386 TGATTCTATCAAAAACGGTGGA
2197435 AAGAATAGCT
Statistics
Matches: 349, Mismatches: 53, Indels: 14
0.84 0.13 0.03
Matches are distributed among these distances:
439 15 0.04
440 1 0.00
442 5 0.01
443 265 0.76
444 63 0.18
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.32
Consensus pattern (439 bp):
TTCCCAATCTTGAAAAAAATGGAGACTGTTACGAGAATCGATGCTTATCTTAATTAAGGGATGAA
CTTTGATTTTAAGGAAAATAGGACAAACAAAAGATTTCCAGGAAAAAGAAAATAATCAAAAACAT
TTATCCCAATGAGGAAAATGCATTTATACTACCTAATCACAAAATGAATGAAGATAATTACTAGA
ATCCATATTTGTCTCATTTGAGACACGAACTCAGACTTTAAGAAAATTGGTGGGAAAAAAGCCTT
ACTTGCAAAACCAAAGCATCAATATGATGCATCTAAAAGAGAAGACTATGTTTATGGAGCCTAAT
CCTGAAAAAAATAGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATT
CTATCAAAAACGGTGGAGAAAAAAGCTTAACTTGCGAATGTGTTTTGGA
Found at i:2197906 original size:158 final size:153
Alignment explanation
Indices: 2197743--2198433 Score: 401
Period size: 159 Copynumber: 4.4 Consensus size: 153
2197733 TTACAAATAT
*
2197743 TGGTGGGAA-AAAAGCCTTTCTTGC-AAAGCCAAAGCATCAATATCGTGTATCCTAATGGGAAGA
1 TGGTGGGAAGAAAAGCCTTTCTTGCGAAA-CCAAAGCATCAATATCATGTATCCTAATGGG-AGA
2197806 CTATGTTTATGGTTCCTAATCCTGAAAAGAATGGGGATTGGCATGAGTATTCATGTTTGTCATAT
64 -TATGTTTATGGTTCCTAATCCTGAAAAGAATGGGGATT-G-ATGAGTATTCATGTTTGTC-TAT
2197871 TTAAGAGACAAACTGTGATTCTATCAAAAA
125 TTAAGAGACAAACT-TGATTCTATCAAAAA
* * * *
2197901 CGGT-GGAATGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATAAAGGGA
1 TGGTGGGAA-GAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAAT---GGGA
* * * * * *
2197965 -ATGTGTTT-TAGCTTCCTAATCTTTAAAAGAATGGAGACGATT-ATGAG-AATCGATGCTTGTC
62 GATATGTTTAT-GGTTCCTAATCCTGAAAAGAATGG-G--GATTGATGAGTATTC-ATGTTTGTC
* ** * ****
2198026 TTATTTAAGGGATGAACTTTGATTTTAAGGGAAA
122 -TATTTAAGAGACAAAC-TTGATTCTATCAAAAA
* * * * * ** * * *
2198060 TAG-GGAAAGAAAAG-ATTTCCATGCAAAAGAAAATCATCAACATCATTTATCCTAATGAGGAGA
1 TGGTGGGAAGAAAAGCCTTT-CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG-GGAGA
* * * ** ** * * *
2198123 AAGTGTTTGTAGTGGCTAATCAC--AAAATGAATGAAGATCATTAAT-AGAATCCATGTTTGTCT
64 TA-TGTTTATGGTTCCTAATC-CTGAAAA-GAATG--G-GGATTGATGAGTATTCATGTTTGTCT
* * *
2198185 CCTTT--GAGGCATGAACTTAGACAT-TA-CAAAAA
123 -ATTTAAGAGACA--AACTT-GA-TTCTATCAAAAA
* * * * **
2198217 TTGGTGGGAA-AAAAGCCTTTCTTGCAAAACCAAAGCTTTAATATCGTGTATCCTAATGAAAAGA
1 -TGGTGGGAAGAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG-GGAGA
* * * *
2198281 CTATGTTTATGGTTCGTAATCTTGAAAAGAACGGGGATTAGTATGAGTATTCATATTTGTCGTAT
64 -TATGTTTATGGTTCCTAATCCTGAAAAGAATGGGGATT-G-ATGAGTATTCATGTTTGTC-TAT
*
2198346 TTAAGAGACAAACTATGATTCTATTAAAAA
125 TTAAGAGACAAACT-TGATTCTATCAAAAA
* * *
2198376 TGG-GGGAATGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATG
1 TGGTGGGAA-GAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG
2198434 AAGGGAATGT
Statistics
Matches: 394, Mismatches: 93, Indels: 91
0.68 0.16 0.16
Matches are distributed among these distances:
155 4 0.01
156 6 0.02
157 26 0.07
158 165 0.42
159 173 0.44
160 12 0.03
161 1 0.00
162 7 0.02
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.31
Consensus pattern (153 bp):
TGGTGGGAAGAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGGGAGATA
TGTTTATGGTTCCTAATCCTGAAAAGAATGGGGATTGATGAGTATTCATGTTTGTCTATTTAAGA
GACAAACTTGATTCTATCAAAAA
Found at i:2197957 original size:159 final size:153
Alignment explanation
Indices: 2197290--2198910 Score: 418
Period size: 158 Copynumber: 10.2 Consensus size: 153
2197280 AAAGCCTTAG
* * * * * **
2197290 TTGCAAAACCAAAGCTTCAATATGATGTATCCTATTGAGAATAGTATGTTTATGGCGCCTAATCC
1 TTGCAAAACCAAAGCATCAATATCATGTATCCTAATG-GGAGA-TATGTTTATGGTTCCTAATCC
* * *
2197355 T-ACAAAGAATAGGGATTAGTATGAGTATTCTTTTTTGTCGTATTTAAGAGACAAACTTTGATTC
64 TGA-AAAGAATGGGGATT-G-ATGAGTATTCATGTTTGTC-TATTTAAGAGACAAAC-TTGATTC
* * *
2197419 TATCAAAAACGGTGGAAAGAATAGCTTTTC
124 TATCAAAAATGGTGGAATGAAAAGCTTTTC
* * * * * *
2197449 TTACAACAA-TAAAGCATTAATGTCATGTTTCCTTAA-GAGG-GA-ATGTGTT-TGGCTTCCCAA
1 TTGCAA-AACCAAAGCATCAATATCATGTATCC-TAATG-GGAGATATGT-TTATGG-TTCCTAA
* *** * ** * * * * **
2197509 TCTTGAAAAGAATAAAGATTGTTACGACAATTGATGCTTGTCCTAATTAAGGGATGAACTTTGAT
61 TCCTGAAAAGAATGGGGATTG--ATGAGTATTCATGTTTGT-CTATTTAAGAGACAAAC-TTGAT
* * * ** *
2197574 TTTATGAAAAATTG-GGAAAAAAAAGATTTTC
122 TCTATCAAAAATGGTGGAATGAAAAGCTTTTC
* ** ** * * * * ** *
2197605 ATGCAAAAGAAAATAATCAGTATCTTTTATCCTAATGAGGAGAAAGTGTTTATAATGCCTAATCA
1 TTGCAAAACCAAAGCATCAATATCATGTATCCTAATG-GGAGATA-TGTTTATGGTTCCTAATC-
** * * * * * *
2197670 C--AAAATGAATGAAGATTGTTACT-AGAATCCATGTTTTTCTCA-TT-GGAGGCATGATCTTAG
63 CTGAAAA-GAATGGGGATTG--A-TGAGTATTCATGTTTGTCT-ATTTAAGAGACA--AACTT-G
* * *
2197730 ACAT-TA-CAAATATTGGTGGGAA--AAAAGCCTTTC
120 A-TTCTATCAAA-AATGGT-GGAATGAAAAGCTTTTC
* *
2197763 TTGCAAAGCCAAAGCATCAATATCGTGTATCCTAATGGGAAGACTATGTTTATGGTTCCTAATCC
1 TTGCAAAACCAAAGCATCAATATCATGTATCCTAATGGG-AGA-TATGTTTATGGTTCCTAATCC
2197828 TGAAAAGAATGGGGATTGGCATGAGTATTCATGTTTGTCATATTTAAGAGACAAACTGTGATTCT
64 TGAAAAGAATGGGGATT-G-ATGAGTATTCATGTTTGTC-TATTTAAGAGACAAACT-TGATTCT
*
2197893 ATCAAAAACGGTGGAATGAAAAGCTTTTC
125 ATCAAAAATGGTGGAATGAAAAGCTTTTC
* * * * *
2197922 TTGCGACACCAAAGCATCAATGTCATGTATCCTAATAAAGGGA-ATGTGTTT-TAGCTTCCTAAT
1 TTGCAAAACCAAAGCATCAATATCATGTATCCTAAT---GGGAGATATGTTTAT-GGTTCCTAAT
* * * * * **
2197985 CTTTAAAAGAATGGAGACGATT-ATGAG-AATCGATGCTTGTCTTATTTAAGGGATGAACTTTGA
62 CCTGAAAAGAATGG-G--GATTGATGAGTATTC-ATGTTTGTC-TATTTAAGAGACAAAC-TTGA
* **** * * * *
2198048 TTTTAAGGGAAATAG-GGAAAGAAAAGATTTCC
121 TTCTATCAAAAATGGTGGAATGAAAAGCTTTTC
* ** * * * * * * **
2198080 ATGCAAAAGAAAATCATCAACATCATTTATCCTAATGAGGAGAAAGTGTTTGTAGTGGCTAATCA
1 TTGCAAAACCAAAGCATCAATATCATGTATCCTAATG-GGAGATA-TGTTTATGGTTCCTAATC-
** * * * * *
2198145 C--AAAATGAATGAAGATCATTAAT-AGAATCCATGTTTGTCTCCTTT--GAGGCATGAACTTAG
63 CTGAAAA-GAATG--G-GGATTGATGAGTATTCATGTTTGTCT-ATTTAAGAGACA--AACTT-G
* *
2198205 ACAT-TA-CAAAAATTGGTGGGAA--AAAAGCCTTTC
120 A-TTCTATCAAAAA-TGGT-GGAATGAAAAGCTTTTC
* * * ** * *
2198238 TTGCAAAACCAAAGCTTTAATATCGTGTATCCTAATGAAAAGACTATGTTTATGGTTCGTAATCT
1 TTGCAAAACCAAAGCATCAATATCATGTATCCTAATG-GGAGA-TATGTTTATGGTTCCTAATCC
* *
2198303 TGAAAAGAACGGGGATTAGTATGAGTATTCATATTTGTCGTATTTAAGAGACAAACTATGATTCT
64 TGAAAAGAATGGGGATT-G-ATGAGTATTCATGTTTGTC-TATTTAAGAGACAAACT-TGATTCT
* *
2198368 ATTAAAAATGGGGGAATGAAAAGCTTTTC
125 ATCAAAAATGGTGGAATGAAAAGCTTTTC
* * * * * *
2198397 TTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGG-GA-ATGTGTTTTAGCTTCCCAAT
1 TTGCAAAACCAAAGCATCAATATCATGTATCCTAATG--GGAGATATGT-TTAT-GGTTCCTAAT
* * * * * * * * **
2198460 CTTGAAAAGAATGGAAACGA-TAACGAG-AATCAATGCTTGTCGTATTTTAGGGATTAACTTTGA
62 CCTGAAAAGAATGG---GGATTGATGAGTATTC-ATGTTTGTC-TATTTAAGAGACAAAC-TTGA
* **** * * *
2198523 TTTTAAGGGAAATAAG-GCAAAGAAAAGAC-TTTC
121 TTCTATCAAAAAT-GGTGGAATGAAAAG-CTTTTC
* ** * * * * *
2198556 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA-ACGTGTTTGTAGTACCTAATC
1 TTGCAAAACCAAAGCATCAATATCATGTATCCTAATG-GGAGATA--TGTTTATGGTTCCTAATC
* * * * * ** ** * *
2198620 AC--AAAATGAATGGAGATCATTACT-AGAATCCATTTTTGTCTCGTTCGGGGCACGAACTTAGA
63 -CTGAAAA-GAATGGGGAT--TGA-TGAGTATTCATGTTTGTCTATTTAAGAG-ACAAACTT-GA
* * *
2198682 CAT-TA-CAAAAATTGGTTGGAA--AAAACCCTTTC
121 -TTCTATCAAAAA-TGG-TGGAATGAAAAGCTTTTC
* * * *
2198714 TTGCAAAACCAAAGCATCCATATCGTGTATCCTAATGAGAAGACTATGTTTAGGGTTCCTAAT-C
1 TTGCAAAACCAAAGCATCAATATCATGTATCCTAATG-GGAGA-TATGTTTATGGTTCCTAATCC
* * * * * *
2198778 TGGAAAAGAAATAGGGATTAAT-ATGGCTATTCATGTTTGTTTCATTTAGGAGACTAACTTTGTT
64 T-GAAAAG-AATGGGGATTGATGA--G-TATTCATGTTTGTCT-ATTTAAGAGACAAAC-TTGAT
*
2198842 TCTATCAAAAATGGTGGAAAGAAAAGCTTTTC
122 TCTATCAAAAATGGTGGAATGAAAAGCTTTTC
* ** * *
2198874 TTACAACCCCAACGCATCAATGTCATGTATCCTAATG
1 TTGCAAAACCAAAGCATCAATATCATGTATCCTAATG
2198911 AAGGGAATGC
Statistics
Matches: 1056, Mismatches: 285, Indels: 241
0.67 0.18 0.15
Matches are distributed among these distances:
155 9 0.01
156 57 0.05
157 110 0.10
158 397 0.38
159 376 0.36
160 93 0.09
161 5 0.00
162 9 0.01
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (153 bp):
TTGCAAAACCAAAGCATCAATATCATGTATCCTAATGGGAGATATGTTTATGGTTCCTAATCCTG
AAAAGAATGGGGATTGATGAGTATTCATGTTTGTCTATTTAAGAGACAAACTTGATTCTATCAAA
AATGGTGGAATGAAAAGCTTTTC
Found at i:2198222 original size:475 final size:475
Alignment explanation
Indices: 2197014--2199325 Score: 2829
Period size: 475 Copynumber: 4.9 Consensus size: 475
2197004 CTTAACTTGC
* * * *
2197014 GAATGTGTTTTGGATTCCCAATCTTGAAAAAAATGGAGACTG-TTACGAGAATCGATGCTTATCT
1 GAATGTGTTTTAGCTTCCCAATCTTGAAAAGAATGGAGAC-GATTACGAGAATCGATGCTTGTCT
* * *
2197078 TTTTTAAGGGATTAACTTTGATTTTAAGGAAAATAAGG-AAAACAAAAGATTTCCATGAAAAAGA
65 TATTTAAGGGATGAACTTTGATTTTAAGGAAAAT-AGGCAAAA-AAAAGATTTCCATGCAAAAGA
* * * *
2197142 AAATCATCAAAAAC-TTGTATCCCAATGAGGA-AAA-TGCATTTATTACTACCTAATCACAAAAT
128 AAATCATCAATATCATT-TATCCTAATGAGGAGAAAGTG--TTTA-TAGTACCTAATCACAAAAT
* * ** *
2197204 GAATGAAGATCATTACTAGAATCCATATTTGTCTCATTTGAGGCA-GAACTTAGACTTTATGAAT
189 GAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACATTACAAAA
** * * *
2197268 ATTGGTGGGAAAAAAGCCTTAGTTGCAAAACCAAAGCTTCAATAT-GATGTATCCTATTGAGAAT
254 ATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCG-TGTATCCTAATGAGAAG
* ** * *
2197332 AGTATGTTTATGGCGCCTAATCCT-ACAAAGAATAGGGATTAGTATGAGTATTCTTTTTTGTCGT
318 ACTATGTTTATGGTTCCTAATCCTGA-AAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCGT
* * **
2197396 ATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAATAGCTTTTCTTACAACAATAA
382 ATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTACAACACCAA
* *
2197461 AGCATTAATGTCATGTTTCCT--TAAGAGG
447 AGCATCAATGTCATGTATCCTAATAA-AGG
* ** * * * *
2197489 GAATGTG-TTTGGCTTCCCAATCTTGAAAAGAATAAAGATTG-TTACGACAATTGATGCTTGTCC
1 GAATGTGTTTTAGCTTCCCAATCTTGAAAAGAATGGAGA-CGATTACGAGAATCGATGCTTGTCT
* * * * * *
2197552 TAATTAAGGGATGAACTTTGATTTTATGAAAAATTGGGAAAAAAAAGATTTTCATGCAAAAGAAA
65 TATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGCAAAAAAAAGATTTCCATGCAAAAGAAA
* * * * *
2197617 ATAATCAGTATCTTTTATCCTAATGAGGAGAAAGTGTTTATAATGCCTAATCACAAAATGAATGA
130 ATCATCAATATCATTTATCCTAATGAGGAGAAAGTGTTTATAGTACCTAATCACAAAATGAATGA
** * * * *
2197682 AGATTGTTACTAGAATCCATGTTTTTCTCATTGGAGGCATGATCTTAGACATTACAAATATTGGT
195 AGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACATTACAAAAATTGGT
* *
2197747 GGGAAAAAAGCCTTTCTTGCAAAGCCAAAGCATCAATATCGTGTATCCTAATGGGAAGACTATGT
260 GGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGT
* * * *
2197812 TTATGGTTCCTAATCCTGAAAAGAATGGGGATTGGCATGAGTATTCATGTTTGTCATATTTAAGA
325 TTATGGTTCCTAATCCTGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGA
* * * * *
2197877 GACAAACTGTGATTCTATCAAAAACGGTGGAATGAAAAGCTTTTCTTGCGACACCAAAGCATCAA
390 GACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTACAACACCAAAGCATCAA
2197942 TGTCATGTATCCTAATAAAGG
455 TGTCATGTATCCTAATAAAGG
* * *
2197963 GAATGTGTTTTAGCTTCCTAATCTTTAAAAGAATGGAGACGATTATGAGAATCGATGCTTGTCTT
1 GAATGTGTTTTAGCTTCCCAATCTTGAAAAGAATGGAGACGATTACGAGAATCGATGCTTGTCTT
* * *
2198028 ATTTAAGGGATGAACTTTGATTTTAAGGGAAATAGGGAAAGAAAAGATTTCCATGCAAAAGAAAA
66 ATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGCAAAAAAAAGATTTCCATGCAAAAGAAAA
* * **
2198093 TCATCAACATCATTTATCCTAATGAGGAGAAAGTGTTTGTAGTGGCTAATCACAAAATGAATGAA
131 TCATCAATATCATTTATCCTAATGAGGAGAAAGTGTTTATAGTACCTAATCACAAAATGAATGAA
* *
2198158 GATCATTAATAGAATCCATGTTTGTCTCCTTTGAGGCATGAACTTAGACATTACAAAAATTGGTG
196 GATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACATTACAAAAATTGGTG
* * *
2198223 GGAAAAAAGCCTTTCTTGCAAAACCAAAGCTTTAATATCGTGTATCCTAATGAAAAGACTATGTT
261 GGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTT
* * ** *
2198288 TATGGTTCGTAATCTTGAAAAGAACGGGGATTAGTATGAGTATTCATATTTGTCGTATTTAAGAG
326 TATGGTTCCTAATCCTGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAG
* * * * * *
2198353 ACAAACTATGATTCTATTAAAAATGGGGGAATGAAAAGCTTTTCTTGCGACACCAAAGCATCAAT
391 ACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTACAACACCAAAGCATCAAT
*
2198418 GTCATGTATCCTAATGAAGG
456 GTCATGTATCCTAATAAAGG
* * * *
2198438 GAATGTGTTTTAGCTTCCCAATCTTGAAAAGAATGGAAACGATAACGAGAATCAATGCTTGTCGT
1 GAATGTGTTTTAGCTTCCCAATCTTGAAAAGAATGGAGACGATTACGAGAATCGATGCTTGTCTT
* * * *
2198503 ATTTTAGGGATTAACTTTGATTTTAAGGGAAATAAGGCAAAGAAAAGACTTT-CATGCAAAAGAA
66 ATTTAAGGGATGAACTTTGATTTTAAGGAAAAT-AGGCAAAAAAAAGA-TTTCCATGCAAAAGAA
* *
2198567 AATCATCAATATCATTTATCCTAATGAGGAGAACGTGTTTGTAGTACCTAATCACAAAATGAATG
129 AATCATCAATATCATTTATCCTAATGAGGAGAAAGTGTTTATAGTACCTAATCACAAAATGAATG
* * * * * *
2198632 GAGATCATTACTAGAATCCATTTTTGTCTCGTTCGGGGCACGAACTTAGACATTACAAAAATTGG
194 AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACATTACAAAAATTGG
* * *
2198697 TTGGAAAAAACCCTTTCTTGCAAAACCAAAGCATCCATATCGTGTATCCTAATGAGAAGACTATG
259 TGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATG
* * *
2198762 TTTAGGGTTCCTAAT-CTGGAAAAGAAATAGGGATTAATATG-GCTATTCATGTTTGT-TTCATT
324 TTTATGGTTCCTAATCCT-GAAAAG-AATAGGGATTAGTATGAG-TATTCATGTTTGTCGT-ATT
* * * * *
2198824 TAGGAGACTAACTTTGTTTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTACAACCCCAACGC
385 TAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTACAACACCAAAGC
*
2198889 ATCAATGTCATGTATCCTAATGAAGG
450 ATCAATGTCATGTATCCTAATAAAGG
* * * **
2198915 GAA-------T-GCGT---AATCTTGAAAAGAATGGAGGCTATTACGAGAATCGATTATTGTCTT
1 GAATGTGTTTTAGCTTCCCAATCTTGAAAAGAATGGAGACGATTACGAGAATCGATGCTTGTCTT
* * * *
2198969 ATTTAAGGTATGAACATT-ATTTTAAAGGAAAATTGGCAAAAAAAAGATTTCCATGCAAAGAAAA
66 ATTTAAGGGATGAACTTTGATTTT-AAGGAAAATAGGCAAAAAAAAGATTTCCATGCAAA-AGAA
* * * *
2199033 AATCATCAATATCATTTATCTTAATGAGAAGAATGTGTTTATAGTACCTAATCAGAAAATGAAT-
129 AATCATCAATATCATTTATCCTAATGAGGAGAAAGTGTTTATAGTACCTAATCACAAAATGAATG
* * *
2199097 AA-A-GATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAATTTGG
194 AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACATTACAAAAATTGG
* * * *
2199160 TGGGATAAAAGCCTTTCTTGCGAAAA-CAAAGCATCAATATGGTGTATCCTAATGAGGAGACTGT
259 TGGGAAAAAAGCCTTTCTTGC-AAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTAT
** * * * * *
2199224 GTTTATTATGT-CTAATCCT-AAAAGGATCAAGGATTGGTATGAGTATTCATGTTTGTTGTTTTT
323 GTTTATGGT-TCCTAATCCTGAAAAGAAT-AGGGATTAGTATGAGTATTCATGTTTGTCGTATTT
* *
2199287 AAGAGATAAACTTTGATTTTATCAAAAATGGTGGAAAGA
386 AAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGA
2199326 GTGACACCAA
Statistics
Matches: 1605, Mismatches: 205, Indels: 67
0.86 0.11 0.04
Matches are distributed among these distances:
461 2 0.00
462 65 0.04
463 117 0.07
464 11 0.01
465 26 0.02
466 122 0.08
469 3 0.00
470 1 0.00
472 57 0.04
473 248 0.15
474 97 0.06
475 518 0.32
476 224 0.14
477 114 0.07
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.31
Consensus pattern (475 bp):
GAATGTGTTTTAGCTTCCCAATCTTGAAAAGAATGGAGACGATTACGAGAATCGATGCTTGTCTT
ATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGCAAAAAAAAGATTTCCATGCAAAAGAAAA
TCATCAATATCATTTATCCTAATGAGGAGAAAGTGTTTATAGTACCTAATCACAAAATGAATGAA
GATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACATTACAAAAATTGGTG
GGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTT
TATGGTTCCTAATCCTGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCGTATTTAAGAG
ACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTACAACACCAAAGCATCAAT
GTCATGTATCCTAATAAAGG
Found at i:2200799 original size:21 final size:21
Alignment explanation
Indices: 2200773--2200816 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
2200763 TCGAGCATCC
*
2200773 ATTGTGTCAAGGCACTGATCT
1 ATTGTGTCAAAGCACTGATCT
*
2200794 ATTGTGTCAAAGCATTGATCT
1 ATTGTGTCAAAGCACTGATCT
2200815 AT
1 AT
2200817 GTGCTGAGAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.36
Consensus pattern (21 bp):
ATTGTGTCAAAGCACTGATCT
Found at i:2208327 original size:13 final size:13
Alignment explanation
Indices: 2208309--2208346 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
2208299 ACATTTCACC
2208309 ATGTATCGATACA
1 ATGTATCGATACA
2208322 ATGTATCGATACA
1 ATGTATCGATACA
* *
2208335 TTGTATTGATAC
1 ATGTATCGATAC
2208347 TGAGTGAGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.34, C:0.13, G:0.16, T:0.37
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2212992 original size:159 final size:157
Alignment explanation
Indices: 2212401--2212993 Score: 408
Period size: 159 Copynumber: 3.7 Consensus size: 157
2212391 CTTATGAATG
* * *
2212401 TCATGTATCCTAATAAAGGGA-ATGTACTTTTGGTTCCCAATCTTGAAAAGAAAAGAGACTATTA
1 TCATGTATCCTAA-AAAAGGACATGTA-TTTTGGTTGCCAATCTTGAAAAGAATAGAGACTATTA
* * * * * * ** *
2212465 TGAAAATCGATGCTTT-TCTTTTTTAGGGGATGAACTTTGATTTTAAGGAAAAT-ACAGCAAAGA
64 CGAGAATC-ATG-TTTGTCTTATTTAAGGGACGAACTTTGATTTTAAGAAAAATGGTAG-GAAGA
* * ** *
2212528 AAAGATTTTCATGCAAAAGAAAATCATCAATA
126 AAAGCTTTTCTTGCAAAACCAAAGCATCAATA
* * * ** ** *
2212560 TCATTTACCCT-AAAAAGGACA-ATATGTTTATTGTGCCTAATCACGAAATGAAT-GAAGA-TCA
1 TCATGTATCCTAAAAAAGGACATGTAT-TTTGGT-TGCC-AATCTTGAAAAGAATAG-AGACT-A
* * * * * * * *
2212621 TTACTAGAATCCATGTTGGTCTTATTTAAGGCACGAACTTAGACTTTAGGAAAATTGGTGGGAA-
61 TTACGAGAAT-CATGTTTGTCTTATTTAAGGGACGAACTTTGATTTTAAGAAAAATGGTAGGAAG
2212685 AAAAGCTTTTCTTGCAAAACCAAAGCATCAATA
125 AAAAGCTTTTCTTGCAAAACCAAAGCATCAATA
* * * * * * *
2212718 TTATGTATCCTATTGAGAA-GACTATGT-TTATGG-TGCC--TCTTCCTAAAGAGAA-CGAGGAT
1 TCATGTATCCTA--AAAAAGGAC-ATGTATTTTGGTTGCCAATCTT--GAAA-AGAATAGA-GAC
* * * * * * *
2212777 TAGTATGAGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATA-AAAAATGGTAGG
59 TATTACGAG-AATCATGTTTGTCTTATTTAAGGGACGAACTTTGATTTTA-AGAAAAATGGTAGG
* *
2212841 AAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATG
122 AAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATA
*
2212877 TCATGTATCCTAAAGAAAGGA-ATGTATTTTGGCTTGCCAATCTTGAAAAGAATAGTGACTATTA
1 TCATGTATCCTAAA-AAAGGACATGTATTTTGG-TTGCCAATCTTGAAAAGAATAGAGACTATTA
*
2212941 CGAGAATCAATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAAT
64 CGAGAATC-ATGTTTGTCTTATTTAAGGGACGAACTTTGATTTTAAGAAAAAT
2212994 AGAGCATATA
Statistics
Matches: 322, Mismatches: 79, Indels: 66
0.69 0.17 0.14
Matches are distributed among these distances:
155 2 0.01
156 1 0.00
157 21 0.07
158 112 0.35
159 161 0.50
160 15 0.05
161 5 0.02
162 5 0.02
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (157 bp):
TCATGTATCCTAAAAAAGGACATGTATTTTGGTTGCCAATCTTGAAAAGAATAGAGACTATTACG
AGAATCATGTTTGTCTTATTTAAGGGACGAACTTTGATTTTAAGAAAAATGGTAGGAAGAAAAGC
TTTTCTTGCAAAACCAAAGCATCAATA
Found at i:2216088 original size:474 final size:474
Alignment explanation
Indices: 2215201--2216107 Score: 1190
Period size: 474 Copynumber: 1.9 Consensus size: 474
2215191 CTTTTCTTAT
* * * *
2215201 GAATGTGTTTTGGCTTCCCAATCTTGAAAATAATGGAGACTGTTACGAGAATCGATGCTGATCTT
1 GAATGTGTTTTGGCTTCACAATCTTGAAAAGAATAGAGACTGTTACGAGAATCGATGCTGATCTC
* * * ** *
2215266 TTTTAAGGGATGAACTTTCATTTTAAGGAAAATAAGGCAAAGAAAAGATTCCCATGCAAAAGAAA
66 ATATAAGGGATAAACACTAATTTTAAGGAAAATAAGGCAAAGAAAAGATTCCCATGCAAAAGAAA
* * * *
2215331 ATTATCAGTATCATTTATCCCAATGAGGAAATGTGTTTATAGTACCAAATCACAAAATTAATAAA
131 ATCATCAATATCATTTATCCCAATGAGGAAATGTGTCTATAGTACCAAATCACAAAATGAATAAA
* ** * *
2215396 GATCATTACCAGAATCCATGTTTGTCTTATTTGGGCACAAACCTAGAATTTATGAATATTGGTGG
196 GATCATTACCAGAATCCATGTTTGTCTCATTTGGGCACAAACCTAGAATTTACCAAAATTGATGG
* * * *
2215461 GAAAAAAGCCTTACTTGCCAAACCAAAGCATCAATGTGATGTATCCTATTGAGAAGAATATGTTG
261 GAAAAAAGCCTTACTTGCCAAACCAAAGCATCAATATGATATATCCTAATGAGAAGAATACGTTG
* * * * * * * *
2215526 ATGGTGCCTAATCTTGCAAAGAATGGGGATTAGTATGAGTATTCTTTTTTGTCGTATTTAGGAGA
326 ATGCTGCCTAATCTTGAAAAGAACGGGGATTAGTATGAGTATTCATGTTTGTCATAATTAAGAGA
* * * * *
2215591 TAAACTTTCTTTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCATACGACACCAAAGCATCAATG
391 CAAACTTTCATTCTATAAAAAATGGTGAAAAGAAAAGCATTTCATACGACACCAAAGCATCAATG
2215656 TCTTGTACCTTAATAAAGG
456 TCTTGTACCTTAATAAAGG
* * *
2215675 GAATGTGTTTTGGCTTCACAGTCTTGAAAAGAATAGAGATTGTTACGAGAATTGATGCTTG-TCT
1 GAATGTGTTTTGGCTTCACAATCTTGAAAAGAATAGAGACTGTTACGAGAATCGATGC-TGATCT
* * * *
2215739 CATATAAGGGATAAACACTAATTTTAAGGAAAATAGGGCGAAGAAAAGATTTCTATGCAAAAGAA
65 CATATAAGGGATAAACACTAATTTTAAGGAAAATAAGGCAAAGAAAAGATTCCCATGCAAAAGAA
* * * * * *
2215804 AATCATCAATATCATTTATCCTAATGTGGAGAATGTG-CTATAGTGCCTAATCCCAAAATGAATG
130 AATCATCAATATCATTTATCCCAATGAGGA-AATGTGTCTATAGTACCAAATCACAAAATGAATA
* * * *
2215868 AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAGTTTACCAAAATTGA
194 AAGATCATTACCAGAATCCATGTTTGTCTCATTTG-GGCACAAACCTAGAATTTACCAAAATTGA
* * * * * * *
2215933 TGGGAAAAAAGCTTTTCTTGCGAATCC-CAGCATCAATATGATATATCCTAATGAGATGACTACG
258 TGGGAAAAAAGCCTTACTTGCCAAACCAAAGCATCAATATGATATATCCTAATGAGAAGAATACG
* *
2215997 TTTATGCTTCCTAATCTTGAAAAGAACGGGGATTAGTATGAGTATTCATGTTTGTCATAATTAAG
323 TTGATGCTGCCTAATCTTGAAAAGAACGGGGATTAGTATGAGTATTCATGTTTGTCATAATTAAG
* *
2216062 AGACAAACTTTGATTCTATAAAAAATGGTGAAAAGTAAAGCATTTC
388 AGACAAACTTTCATTCTATAAAAAATGGTGAAAAGAAAAGCATTTC
2216108 TTGTGAATGT
Statistics
Matches: 366, Mismatches: 64, Indels: 6
0.84 0.15 0.01
Matches are distributed among these distances:
474 313 0.86
475 53 0.14
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (474 bp):
GAATGTGTTTTGGCTTCACAATCTTGAAAAGAATAGAGACTGTTACGAGAATCGATGCTGATCTC
ATATAAGGGATAAACACTAATTTTAAGGAAAATAAGGCAAAGAAAAGATTCCCATGCAAAAGAAA
ATCATCAATATCATTTATCCCAATGAGGAAATGTGTCTATAGTACCAAATCACAAAATGAATAAA
GATCATTACCAGAATCCATGTTTGTCTCATTTGGGCACAAACCTAGAATTTACCAAAATTGATGG
GAAAAAAGCCTTACTTGCCAAACCAAAGCATCAATATGATATATCCTAATGAGAAGAATACGTTG
ATGCTGCCTAATCTTGAAAAGAACGGGGATTAGTATGAGTATTCATGTTTGTCATAATTAAGAGA
CAAACTTTCATTCTATAAAAAATGGTGAAAAGAAAAGCATTTCATACGACACCAAAGCATCAATG
TCTTGTACCTTAATAAAGG
Found at i:2217161 original size:13 final size:13
Alignment explanation
Indices: 2217143--2217167 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2217133 ATATTGCACA
2217143 GTATCGATACATT
1 GTATCGATACATT
2217156 GTATCGATACAT
1 GTATCGATACAT
2217168 GACCAAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:2217309 original size:33 final size:32
Alignment explanation
Indices: 2217251--2217312 Score: 97
Period size: 33 Copynumber: 1.9 Consensus size: 32
2217241 TAACTGTTTT
*
2217251 TATTGATACACACAAGATGTATCGATACAATG
1 TATTGATACACACAAAATGTATCGATACAATG
*
2217283 TATTGATACATCCCAAAATGTATCGATACA
1 TATTGATACA-CACAAAATGTATCGATACA
2217313 TTGGCTTGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
32 10 0.37
33 17 0.63
ACGTcount: A:0.40, C:0.18, G:0.13, T:0.29
Consensus pattern (32 bp):
TATTGATACACACAAAATGTATCGATACAATG
Found at i:2219982 original size:437 final size:435
Alignment explanation
Indices: 2219205--2219995 Score: 1097
Period size: 437 Copynumber: 1.8 Consensus size: 435
2219195 GGTTGTCTCA
* *
2219205 TTTAAGGGATGAACATTGATTTTAAGGAAAATAGGGCGAAGAAAAGATTTTCATGCGAAAGAAAA
1 TTTAAGGGATGAACATTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCGAAAAAAAA
* * *
2219270 TCGTCAATATCATTTATCCTAATGTGGAGAATGTGCTATAGTGCCTAATCACAAAATGAATGAAG
66 TCATCAATATCATTTATCCTAATGTGGAGAATGTGCTATACTACCTAATCACAAAATGAATGAAG
* * *
2219335 ATTATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACCAAAATTGGTGG
131 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAAACTTTACCAAAATTGGTGG
* * * ** * * *
2219400 GATAAAAGTCTTTCTTGCGAATCCCAGCATCTATATGATATATCCTAAAGAGATGACTACGCTTA
196 GATAAAAGCCTTTCTTGCAAAACAAAGCACCAATATGATATATCCTAAAGAGAAGACTACGCTTA
* *
2219465 TGCTGCCTAATCCTGAAAAGAACAGGGATTAGTATGAGTATTCATGTTTGTCATATTTAAGAGAC
261 TGCAGCCTAATCCTAAAAAGAACAGGGATTAGTATGAGTATTCATGTTTGTCATATTTAAGAGAC
*
2219530 AAACTTTGATTCTATCAAAAATGGTGGAAACTAAAGCATTTCTTGCGAACGTATTTTGGCTTCCC
326 AAACTTTGATTCTATCAAAAACGGTGGAAACTAAAGCATTTCTTGCGAACGTATTTTGGCTTCCC
2219595 AATTTTGAAAAAAAAGACTGTTACGAGAATTGATTCTTATCTTTT
391 AATTTTGAAAAAAAAGACTGTTACGAGAATTGATTCTTATCTTTT
* * * * * *
2219640 TTTAGGGGATGAACTTTGATTTTGAGGAAAATAGGGTAAAGATAAGATTTTCGTGCGAAAAAAAA
1 TTTAAGGGATGAACATTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCGAAAAAAAA
* * * * *
2219705 TCATCAATATCATTTATCCTAAT-TAGGCGAATGTGTTTATACTATCTAATCACAAAATGACTGT
66 TCATCAATATCATTTATCCTAATGT-GGAGAATGTG-CTATACTACCTAATCACAAAATGAATGA
*
2219769 AGATCATTACTGGAATCCATGTTTGTCTCATTTGAGGC-CTAAACTTAAACTTTA-CAAAATTTG
129 AGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAC-AAACTTAAACTTTACCAAAA-TTG
* * * *
2219832 GTGGTA-AAAATGCCTTTCTTGCAAAACGAAAGCACCAATATGATGTATCCTTAAGTGAAGACTA
192 GTGGGATAAAA-GCCTTTCTTGCAAAAC-AAAGCACCAATATGATATATCCTAAAGAGAAGACTA
* * * * * * **
2219896 TGTTTATAG-AGCCTTATGCTAAAAAGAATAGGGATTAGTGTGAGTATTCATGTTTGTTGTATTT
255 CGCTTAT-GCAGCCTAATCCTAAAAAGAACAGGGATTAGTATGAGTATTCATGTTTGTCATATTT
2219960 AAGAGACAAACTTTGATTCTATCAAAAACGGTGGAA
319 AAGAGACAAACTTTGATTCTATCAAAAACGGTGGAA
2219996 GGAATAGTTT
Statistics
Matches: 306, Mismatches: 43, Indels: 12
0.85 0.12 0.03
Matches are distributed among these distances:
434 1 0.00
435 98 0.32
436 91 0.30
437 115 0.38
438 1 0.00
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.33
Consensus pattern (435 bp):
TTTAAGGGATGAACATTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCGAAAAAAAA
TCATCAATATCATTTATCCTAATGTGGAGAATGTGCTATACTACCTAATCACAAAATGAATGAAG
ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAAACTTTACCAAAATTGGTGG
GATAAAAGCCTTTCTTGCAAAACAAAGCACCAATATGATATATCCTAAAGAGAAGACTACGCTTA
TGCAGCCTAATCCTAAAAAGAACAGGGATTAGTATGAGTATTCATGTTTGTCATATTTAAGAGAC
AAACTTTGATTCTATCAAAAACGGTGGAAACTAAAGCATTTCTTGCGAACGTATTTTGGCTTCCC
AATTTTGAAAAAAAAGACTGTTACGAGAATTGATTCTTATCTTTT
Found at i:2221399 original size:158 final size:156
Alignment explanation
Indices: 2220327--2222873 Score: 483
Period size: 158 Copynumber: 16.2 Consensus size: 156
2220317 GCCTTTAAAT
* * * *
2220327 GAAAGCATCAATATGATGTATCCTAA-AGAGAAGACTATGTTTATGGAGCCTTATCCTAAAAAGA
1 GAAAGCATCAATATCATGTATCCTAATA-AGAA-AATATGTTTATGGTGCCTAATCCTAAAAAGA
* * ** *
2220391 ATAGGG-ATTAGTATAAGTATTCATGCTTGTCAAATTTAAGAGACAAACTTTGATTCTATCAAAA
64 AT-GGGAATTA-TATGAGTATTCATGTTTGTCTTATTTAAGAGACGAACTTTGATTCTATCAAAA
* * *
2220455 ATGGTGGAAAGAAAAGCTTTTCTTGCGATAT
127 ATGGTGGGAA-AAAAGCTTTTCTTGCGAAAC
* * * * * * * * * *
2220486 TAGAGCATCAATGTCATGTATCTTAAAGAAGGAAATGTGTTT-TGGCTTCCCAAT-CTAGTAAAG
1 GAAAGCATCAATATCATGTATCCT-AATAAGAAAATATGTTTATGG-TGCCTAATCCTA-AAAAG
* * * * * * ** * * * ***
2220549 AATGGAGACTGT-TACGAG-AATCATTGCTTGTCTTA-TTAGGGGATAAACATTAATTTTAAGGA
63 AATGG-GAAT-TATATGAGTATTCA-TGTTTGTCTTATTTAAGAGACGAACTTTGATTCTATCAA
* * * * * * * * *
2220611 AAATAG-GGCAAGGCAATGATTTCCAT-CCAAAA
125 AAATGGTGGGAA--AAAAGCTTTTCTTGCGAAAC
* * * * * * * *
2220643 GTAAATCATCAAAATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC-AAAATG
1 G-AAAGCATCAATATCATGTATCCTAAT-AAGAAAATATGTTTATGGTGCCTAATC-CTAAAAAG
* * * * * *
2220707 AGTGAAGATCATTACTA-GA--ATCCATGTCTGTCTCT-TTTAAG-GCATGAACTTAGACTT-TA
63 AATG-GGA--ATTA-TATGAGTATTCATGTTTGTCT-TATTTAAGAG-ACGAACTTTGA-TTCTA
* *
2220766 -CAAAAATTGGT-GGAAAAAAGCCTTTCTTGCGAAAT
121 TCAAAAA-TGGTGGGAAAAAAGCTTTTCTTGCGAAAC
* *
2220801 GAAAGCATCAATA-CGATGTATCCTAA-AGAGGAGACTATGTTTAT-GTGCCTAATCCTAAAAAG
1 GAAAGCATCAATATC-ATGTATCCTAATA-A-GAAAATATGTTTATGGTGCCTAATCCTAAAAAG
* * * * **
2220863 AATGGGGATTAGCATGAGTGTTCATGTTTTTCTTATTTAAGAGATAAACTTTGATTCTATCAAAA
63 AATGGGAATTA-TATGAGTATTCATGTTTGTCTTATTTAAGAGACGAACTTTGATTCTATCAAAA
* * *
2220928 ATGGT-GAAAAGAAATG-TAATTCTTGCGGAATC
127 ATGGTGGGAAA-AAA-GCT-TTTCTTGC-GAAAC
* * * * * * * * *
2220960 -AAAGAATGAATGTCATGTATCCAAATAAAGGAAATGTGTTT-TGGCTTCAC-AATCTTGAAAAG
1 GAAAGCATCAATATCATGTATCCTAAT-AAGAAAATATGTTTATGG-TGC-CTAATCCTAAAAAG
** * * * * *
2221022 AACTAAGACAGTTACA--A-AAATCGAT-TCTTGTCTTATTTAAG-GTATGAACATTG-TT-T-T
63 AA-TGGGA-A-TTATATGAGTATTC-ATGT-TTGTCTTATTTAAGAG-ACGAACTTTGATTCTAT
** * * ** *
2221079 -AAAGGAA-AATGGCAAGAAAA--TATTCTTATGAAAAA
122 CAAA--AATGGTGGGAA-AAAAGCTTTTCTTGCG-AAAC
* * * * * * * *
2221114 GAAAATCATCAATGTTAT-T-TCCTAATGAGGAGAATGTGTTTATAGCGCCTAATCAC-AAAATA
1 G-AAAGCATCAATATCATGTATCCTAAT-AAGAAAATATGTTTATGGTGCCTAATC-CTAAAA-A
* * * * * * *
2221176 -AATGAAGATCATTA-CTG-GAATCCATGTTTGTCTCATTTGAG-GCACGAACTTAGACTT-TA-
62 GAATG-GGA--ATTATATGAGTATTCATGTTTGTCTTATTTAAGAG-ACGAACTTTGA-TTCTAT
*
2221235 CAAAAAATGGTGGGAAAAAAGCCTTTCTTGCGAAAC
122 C-AAAAATGGTGGGAAAAAAGCTTTTCTTGCGAAAC
* * * *
2221271 GAAAGCATCAATATGATGTATCTTAATGAGAAAACTATGTTTATGGTTCCTAATCCTAAAAAGAA
1 GAAAGCATCAATATCATGTATCCTAATAAGAAAA-TATGTTTATGGTGCCTAATCCTAAAAAGAA
*
2221336 TGGGAATTAATATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAT
65 TGGGAATT-ATATGAGTATTCATGTTTGTCTTATTTAAGAGACGAACTTTGATTCTATCAAAAAT
* * * *
2221401 GGT-AGAAGGAAAAGTTTTTCTTG-TAGCAC
129 GGTGGGAA--AAAAGCTTTTCTTGCGA-AAC
* * * * ** * * * * *
2221430 CAAAGCTTCAATTTCATGTATCCTAACGAAGGGAATGTGTTT-TGGCTTCCCAAT-CTCATAAAT
1 GAAAGCATCAATATCATGTATCCTAA-TAAGAAAATATGTTTATGG-TGCCTAATCCT-AAAAAG
* * * * ** * * * * ***
2221493 AATGGAGACTGT-TACGAGAATTGATACTTGTCTTATTTAAGGGATGAACTTTGTTTTTAAGGAA
63 AATGG-GAAT-TATATGAGTATTCATGTTTGTCTTATTTAAGAGACGAACTTTGATTCTATCAAA
* * * * *
2221557 AATAG-GGCATAGAAAAGATTTTCATGC-AAAA
126 AATGGTGGGA-A-AAAAGCTTTTCTTGCGAAAC
* * * * *
2221588 GAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCAC-AAAATA
1 G-AAAGCATCAATATCATGTATCCTAATAA-GAAAATATGTTTATGGTGCCTAATC-CTAAAA-A
** * * * *
2221652 -AATAAAGATCATTACTA-GA--ATCCATGTTTGTCTCATTTGAG-GCACGAACTTAGACTT-TA
62 GAAT-GGGA--ATTA-TATGAGTATTCATGTTTGTCTTATTTAAGAG-ACGAACTTTGA-TTCTA
* *
2221711 -CAAAAAGTGGTGGGAAAAAAGCCTTTCTTGCGAAGC
121 TCAAAAA-TGGTGGGAAAAAAGCTTTTCTTGCGAAAC
* * * *
2221747 GAAAGCATCAATATGATGTATCTTAATAACAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAA
1 GAAAGCATCAATATCATGTATCCTAATAAGAAAA-TATGTTTATGGTGCCTAATCCTAAAAAGAA
* * * * *
2221812 TGGGGATTAGTATAAGTATTCATGTTTGTCTTATTTAAGAGACCAACTTTGATTCTATTAAAAAC
65 TGGGAATTA-TATGAGTATTCATGTTTGTCTTATTTAAGAGACGAACTTTGATTCTATCAAAAAT
* * *
2221877 AGTGGAAAAAAAGCTTTTCTTGCGACATC
129 GGTGGGAAAAAAGCTTTTCTTGCGA-AAC
* * * ** * * *
2221906 -AAAGCGTCAATGTCATGTATCCTATTAAAGGGAATGTGTTT-TGGCTTCAC-AATCTTGAAATA
1 GAAAGCATCAATATCATGTATCCTAAT-AAGAAAATATGTTTATGG-TGC-CTAATCCT-AAA-A
* * * * * * * *
2221968 A-ACTGCGACAGTT-T-CGAGAATTGAT-TCTTGTCTTATTT-AGGGTATGAACATTG-TT-T-T
61 AGAATGGGA-A-TTATATGAGTATTCATGT-TTGTCTTATTTAAGAG-ACGAACTTTGATTCTAT
*** * * * * * *
2222025 -AAAAGAAAATAGG---CAAGATTTCCATGC-AAAA
122 CAAAA-ATGGTGGGAAAAAAGCTTTTCTTGCGAAAC
* * * * * *
2222056 GAAAATCATGAATATCAT-T-TCCTAATAAGGAGAATGTGTTTATAGTACCTAATCAC-AAAATA
1 G-AAAGCATCAATATCATGTATCCTAATAA-GAAAATATGTTTATGGTGCCTAATC-CTAAAA-A
* * * * * * *
2222118 -AATGAAGATCATTACTA-GA--ATCCATGCTTGTCTCATTTGAG-GCATGAACTTAGACTT-TA
62 GAATG-GGA--ATTA-TATGAGTATTCATGTTTGTCTTATTTAAGAG-ACGAACTTTGA-TTCTA
* * * * *
2222177 CCAAAAGTGGTGGGAAAAAAGCCTTTCGTGCGAAGC
121 TCAAAAATGGTGGGAAAAAAGCTTTTCTTGCGAAAC
* * * * * * *
2222213 GAAAGGATCAATATGATGTATCTTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAA
1 GAAAGCATCAATATCATGTATCCTAATAAGAA-AATATGTTTATGGTGCCTAATCCTAAAAAGAA
* * * *
2222278 TAGGG-ATTAGTATAAGTATTCATGTTTGTTTTATTTAAGACACCAACTTTGATTCTATCAAAAA
65 T-GGGAATTA-TATGAGTATTCATGTTTGTCTTATTTAAGAGACGAACTTTGATTCTATCAAAAA
* * * * *
2222342 CGGTGGAAAGAAAAGCTTTTCTTACGACAT
128 TGGTGGGAA-AAAAGCTTTTCTTGCGAAAC
* * * * * * * *
2222372 TAAAGCCTCAATGTCATGTATCCTATTAA-AAGGAATGTGGTTT-TGGCTTCAC-AATCTTGAAA
1 GAAAGCATCAATATCATGTATCCTAATAAGAA--AATAT-GTTTATGG-TGC-CTAATCCTAAAA
* ** * * * *
2222434 TGAACTACGACAGTT-TCA--AGAATTGAT-TCTTGTCTTATTTATG-GTACGAA-TATTG-TTT
61 AGAA-TGGGA-A-TTAT-ATGAGTATTCATGT-TTGTCTTATTTAAGAG-ACGAACT-TTGATTC
* *** * * *
2222492 TA-AAGGAAAATAGGCAAAGAAAAAA--TTTTCATGCAAAAG
119 TATCA--AAAAT-GG-TGGGAAAAAAGCTTTTCTTGCGAAAC
* * * ** * * *
2222531 GAAATCATCAATATCATTTATCCTAATGAGGTGAATGTGTTTATAGTGCCTAAT-C-ACAAAATA
1 GAAAGCATCAATATCATGTATCCTAAT-AAGAAAATATGTTTATGGTGCCTAATCCTA-AAAAGA
* * * * * * *
2222594 A-GTGAACATCATTACT-AGAATCCGA-GTTTGTCTCATTTGAG-GCACGAACTTAGACTT-TA-
64 ATG-GGA-ATTA-TA-TGAGTATTC-ATGTTTGTCTTATTTAAGAG-ACGAACTTTGA-TTCTAT
* *
2222653 CAAAAAGTGGTTGGAAAAAAGCCTTTCTTGC-AAAGC
122 CAAAAA-TGGTGGGAAAAAAGCTTTTCTTGCGAAA-C
* * * * * * * *
2222689 GAAAGCATCAATATGATATATCTTAATGAGAAGACTATGTTTATGGTGGCTAATCCTGAAAACAA
1 GAAAGCATCAATATCATGTATCCTAATAAGAA-AATATGTTTATGGTGCCTAATCCTAAAAAGAA
* * *
2222754 TGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACCAACTTTGATTCTATAAAAAAC
65 TGGGAATTA-TATGAGTATTCATGTTTGTCTTATTTAAGAGACGAACTTTGATTCTATCAAAAA-
** * * *
2222819 CAGTGGAAAGAAAAGTTTTTCTTGCGACATC
128 TGGTGGGAA-AAAAGCTTTTCTTGCGA-AAC
*
2222850 -AAAGCATCAATGTCATGTATCCTA
1 GAAAGCATCAATATCATGTATCCTA
2222874 TTAAAGGGAA
Statistics
Matches: 1695, Mismatches: 476, Indels: 433
0.65 0.18 0.17
Matches are distributed among these distances:
148 1 0.00
149 10 0.01
150 51 0.03
151 8 0.00
152 28 0.02
153 11 0.01
154 73 0.04
155 41 0.02
156 126 0.07
157 140 0.08
158 600 0.35
159 446 0.26
160 123 0.07
161 25 0.01
162 10 0.01
163 2 0.00
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (156 bp):
GAAAGCATCAATATCATGTATCCTAATAAGAAAATATGTTTATGGTGCCTAATCCTAAAAAGAAT
GGGAATTATATGAGTATTCATGTTTGTCTTATTTAAGAGACGAACTTTGATTCTATCAAAAATGG
TGGGAAAAAAGCTTTTCTTGCGAAAC
Found at i:2221740 original size:476 final size:474
Alignment explanation
Indices: 2219609--2223686 Score: 4769
Period size: 476 Copynumber: 8.6 Consensus size: 474
2219599 TTGAAAAAAA
* * * * * *
2219609 AGACTGTTACGAGAATTGATTCTTATCTTTTTTTAGGGGATGAACTTTGATTTTGAGGAAAATAG
1 AGACTGTTACGAGAATTGATTCTTGTC-TTATTTAAGGGATGAACATTGTTTTTAAGGAAAATAG
* * * * *
2219674 GGTAAAGATAAGATTTTCGTGCGAAAA-AAAATCATCAATATCATTTATCCTAATTAGGCGAATG
65 GG-CAAGAAAAGATTTTCATGC-AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATG
* ** * * * *
2219738 TGTTTATACTATCTAATCACAAAATGACTGTAGATCATTACTGGAATCCATGTTTGTCTCATTTG
128 TGTTTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG
* * ** * * * *
2219803 AGGC-CTAAACTTAAACTTTACAAAATTTGGTGGTAAAAATGCCTTTCTTGCAAAACGAAAGCAC
193 AGGCAC-GAACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTGCGAAACGAAAGCAT
* * * * * *
2219867 CAATATGATGTATCCTTAA-GTGAAGACTATGTTTATAGAGCCTTATGCTAAAAAGAATAGGGAT
257 CAATATGATGTAT-CTTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGAT
*
2219931 TAGTGTGAGTATTCATGTTTGT-TGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGA
321 TAGTATGAGTATTCATGTTTGTCT-TATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGA
* * * * * * * *
2219995 AGGAATAGTTTGTT-ATGCA-TCACCAAAGCATCAATGTCATGTATCTTAATGAATGGAATGTGT
385 AAGAAAAGTTT-TTCTTG-AGACATCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGT
* *
2220058 TTTGGCTTTC-TAATCTAGAAA-AACAATGG
448 TTTGGC-TTCACAATCTATAAATAAC--T-G
* * * * * *
2220087 AAACTATTAAGAGAATCGATGCTTGTCTTATTTAAGGGATGAACCTTG-TTTTAAGGAAAATAGG
1 AGACTGTTACGAGAATTGATTCTTGTCTTATTTAAGGGATGAACATTGTTTTTAAGGAAAATAGG
*
2220151 GCGAAGAAAAG-GTTTCTATGCAAAA-AAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
66 GC-AAGAAAAGATTTTC-ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
* * * **
2220214 ATTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACCAGAATCCACATTTGTCTCATTTGA
129 GTTTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA
** * * *
2220279 GGCACGAACTTAGACTTTACAAAATTTAGT-GAAAAAAAGCC--T-TT---AAATGAAAGCATCA
194 GGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTGCGAAACGAAAGCATCA
* * * * *
2220337 ATATGATGTATCCTAAAGAGAAGACTATGTTTATGGAGCCTTATCCTAAAAAGAATAGGGATTAG
259 ATATGATGTATCTTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAG
* * ** *
2220402 TATAAGTATTCATGCTTGTCAAATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGA
324 TATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGA
* * * * * * *
2220467 AAAGCTTTTCTTGCGATATTAGAGCATCAATGTCATGTATCTTAA-AGAAGGAAATGTGTTTTGG
389 AAAGTTTTTCTTGAGACATCAAAGCATCAATGTCATGTATCCTAATA-AAGGGAATGTGTTTTGG
* *
2220531 CTTCCCAATCTAGTAAAGAA-TGG
453 CTTCACAATCTA-TAAATAACT-G
* * * **
2220554 AGACTGTTACGAGAA-TCATTGCTTGTCTTA-TTAGGGGATAAACATTAATTTTAAGGAAAATAG
1 AGACTGTTACGAGAATTGATT-CTTGTCTTATTTAAGGGATGAACATTGTTTTTAAGGAAAATAG
* * * * * *
2220617 GGCAAGGCAATGATTTCCATCCAAAAGTAAATCATCAAAATCATTTATCCTAATGAGGAGAATGT
65 GGCAA-GAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
* * * * *
2220682 GTTTATAGTGCCTAATCACAAAATGAGTGAAGATCATTACTAGAATCCATGTCTGTCTCTTTTAA
129 GTTTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA
* * *
2220747 GGCATGAACTTAGACTTTACAAAAATTGGT-GGAAAAAAGCCTTTCTTGCGAAATGAAAGCATCA
194 GGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTGCGAAACGAAAGCATCA
* * * *
2220811 ATACGATGTATCCTAAAGAGGAGACTATGTTTAT-GTGCCTAATCCTAAAAAGAATGGGGATTAG
259 ATATGATGTATCTTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAG
* * * * * *
2220875 CATGAGTGTTCATGTTTTTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAATGGTGAAAAGA
324 TATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGA
* ** * * * * *
2220940 AATGTAATTCTTGCGGA-ATCAAAGAATGAATGTCATGTATCCAAATAAAGGAAATGTGTTTTGG
389 AAAGTTTTTCTTG-AGACATCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTTTTGG
* *
2221004 CTTCACAATCT-TGAAAAGAACTA
453 CTTCACAATCTAT--AAATAACTG
* * * * * *
2221027 AGACAGTTACAAAAATCGATTCTTGTCTTATTTAAGGTATGAACATTGTTTTAAAGGAAAAT--G
1 AGACTGTTACGAGAATTGATTCTTGTCTTATTTAAGGGATGAACATTGTTTTTAAGGAAAATAGG
* * * *
2221090 GCAAGAAAATATTCTT-ATGAAAAAGAAAATCATCAATGTTA-TT-TCCTAATGAGGAGAATGTG
66 GCAAGAAAAGATT-TTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG
* *
2221152 TTTATAGCGCCTAATCACAAAATAAATGAAGATCATTACTGGAATCCATGTTTGTCTCATTTGAG
130 TTTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAG
2221217 GCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTGCGAAACGAAAGCATCAA
195 GCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTGCGAAACGAAAGCATCAA
* * * *
2221282 TATGATGTATCTTAATGAGAAAACTATGTTTATGGTTCCTAATCCTAAAAAGAATGGGAATTAAT
260 TATGATGTATCTTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGT
* * *
2221347 ATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTAGAAGGAA
325 ATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAA
* * * **
2221412 AAGTTTTTCTTGTAG-CACCAAAGCTTCAATTTCATGTATCCTAACGAAGGGAATGTGTTTTGGC
390 AAGTTTTTCTTG-AGACATCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTTTTGGC
*
2221476 TTCCCAATCTCATAAATAA-TGG
454 TTCACAATCT-ATAAATAACT-G
* *
2221498 AGACTGTTACGAGAATTGATACTTGTCTTATTTAAGGGATGAACTTTGTTTTTAAGGAAAATAGG
1 AGACTGTTACGAGAATTGATTCTTGTCTTATTTAAGGGATGAACATTGTTTTTAAGGAAAATAGG
*
2221563 GCATAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTG
66 GCA-AGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG
*
2221628 TTTATAGTGCCTAATCACAAAATAAATAAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAG
130 TTTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAG
* *
2221693 GCACGAACTTAGACTTTACAAAAAGTGGTGGGAAAAAAGCCTTTCTTGCGAAGCGAAAGCATCAA
195 GCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTGCGAAACGAAAGCATCAA
* * * *
2221758 TATGATGTATCTTAATAACAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGT
260 TATGATGTATCTTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGT
* * * *
2221823 ATAAGTATTCATGTTTGTCTTATTTAAGAGACCAACTTTGATTCTATTAAAAACAGTGGAAA-AA
325 ATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAA
* * * *
2221887 AAGCTTTTCTTGCGACATCAAAGCGTCAATGTCATGTATCCTATTAAAGGGAATGTGTTTTGGCT
390 AAGTTTTTCTTGAGACATCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTTTTGGCT
2221952 TCACAATCT-TGAAATAAACTG
455 TCACAATCTAT-AAAT-AACTG
* * * * *
2221973 CGACAGTTTCGAGAATTGATTCTTGTCTTATTT-AGGGTATGAACATTGTTTTAAAAGAAAATA-
1 AGACTGTTACGAGAATTGATTCTTGTCTTATTTAAGGG-ATGAACATTGTTTTTAAGGAAAATAG
* * *
2222036 GGC-----AAGATTTCCATGCAAAAGAAAATCATGAATATCA-TT-TCCTAATAAGGAGAATGTG
65 GGCAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG
* *
2222094 TTTATAGTACCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGCTTGTCTCATTTGAG
130 TTTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAG
* * * * * *
2222159 GCATGAACTTAGACTTTACCAAAAGTGGTGGGAAAAAAGCCTTTCGTGCGAAGCGAAAGGATCAA
195 GCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTGCGAAACGAAAGCATCAA
* * *
2222224 TATGATGTATCTTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATAGGGATTAGT
260 TATGATGTATCTTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGT
* * * *
2222289 ATAAGTATTCATGTTTGTTTTATTTAAGACACCAACTTTGATTCTATCAAAAACGGTGGAAAGAA
325 ATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAA
* * * * *
2222354 AAGCTTTTCTT-ACGACATTAAAGCCTCAATGTCATGTATCCTATTAAAAGGAATGTGGTTTTGG
390 AAGTTTTTCTTGA-GACATCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGT-GTTTTGG
2222418 CTTCACAATCT-TGAAATGAACT-
453 CTTCACAATCTAT-AAAT-AACTG
* * * * * * * *
2222440 ACGACAGTTTCAAGAATTGATTCTTGTCTTATTTATGGTACGAATATTGTTTTAAAGGAAAATA-
1 A-GACTGTTACGAGAATTGATTCTTGTCTTATTTAAGGGATGAACATTGTTTTTAAGGAAAATAG
* * *
2222504 GGCAAAGAAAAAATTTTCATGCAAAAGGAAATCATCAATATCATTTATCCTAATGAGGTGAATGT
65 GGC-AAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
* *
2222569 GTTTATAGTGCCTAATCACAAAATAAGTGAACATCATTACTAGAATCCGA-GTTTGTCTCATTTG
129 GTTTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCC-ATGTTTGTCTCATTTG
* *
2222633 AGGCACGAACTTAGACTTTACAAAAAGTGGTTGGAAAAAAGCCTTTCTTGC-AAAGCGAAAGCAT
193 AGGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTGCGAAA-CGAAAGCAT
* * * *
2222697 CAATATGATATATCTTAATGAGAAGACTATGTTTATGGTGGCTAATCCTGAAAACAATGGGGATT
257 CAATATGATGTATCTTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATT
* * *
2222762 AGTATGAGTATTCATGTTTGTCTTATTTAAGAGACCAACTTTGATTCTATAAAAAACCAGTGGAA
322 AGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA-CGGTGGAA
* *
2222827 AGAAAAGTTTTTCTTGCGACATCAAAGCATCAATGTCATGTATCCTATTAAAGGGAATGTGTTTT
386 AGAAAAGTTTTTCTTGAGACATCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTTTT
*
2222892 GG-TTGCACTATCT-TGAAATGAACT-
451 GGCTT-CACAATCTAT-AAAT-AACTG
* * * * * *
2222916 ACGACAGTTTCGAGAAGTGAATCTTGTCTTATTT-AGGGTAGGAACATTG-TTTTAAGGGAAGAT
1 A-GACTGTTACGAGAATTGATTCTTGTCTTATTTAAGGG-ATGAACATTGTTTTTAA-GGAAAAT
* * * * **
2222979 A-GGCAAAGAATAGATTTCCTATGCAAAAGAAACTCATCAATATC-TTT-TCCTAATAAAAAGAA
63 AGGGC-AAGAAAAGATTTTC-ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
* * * * *
2223041 TGTGGTTATAGTTCTTAATCACAAAATAAATAAAGTAT-ATTACTAGAATCCATGTTTGTCTCAC
126 TGTGTTTATAGTGCCTAATCACAAAATAAATGAAG-ATCATTACTAGAATCCATGTTTGTCTCAT
* * * *
2223105 TTGAAGCACAAACTTAGCCTTTACAAAAAATGGTGGG-AAAAAGCCTTTCTTGCAAAACGAAAGC
190 TTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTGCGAAACGAAAGC
* *
2223169 ATCAATATGATGTATCTTAACGAGAAGACTATGTTTGTGGTGCCTAATCCTAAAAAGAATGGGGA
255 ATCAATATGATGTATCTTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGA
* * * *
2223234 TTAATATGAGTATTGATGTTTGTCTTATTTAAGAG---AACTTTGATTCTATCAAAAATGGTAGA
320 TTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGA
* * * * * **
2223296 AGGAAAAGTTTTTCTTGCA-ACACCAAAGCTTCAATTTCATTTATCCTAACGAAGGGAATGTGTT
385 AAGAAAAGTTTTTCTTG-AGACATCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTT
* * **
2223360 TTGGCTTCCCAATCTCGTAAGCAA-TGG
449 TTGGCTTCACAATCT-ATAAATAACT-G
* * * * *
2223387 AGACTGTTATGAGAATTGGTGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGG
1 AGACTGTTACGAGAATTGATTCTTGTCTTATTTAAGGGATGAACATTGTTTTTAAGGAAAATAGG
*
2223452 GTAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG
66 G-CAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG
* *
2223517 TTTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTAAG
130 TTTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAG
* * * * * * * *
2223582 GCATGAACTCAGGCTTTATAAAAAATGGTGGGAGAAAAGCCTTTCTTGTGAAACCAACGCATCAA
195 GCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTGCGAAACGAAAGCATCAA
* * * *
2223647 TATGATGTATCCTAGA-GAGAAGATTGTGTTTATAGTGCCT
260 TATGATGTATCTTA-ATGAGAAGACTATGTTTATGGTGCCT
2223687 TATACATCTA
Statistics
Matches: 3133, Mismatches: 381, Indels: 177
0.85 0.10 0.05
Matches are distributed among these distances:
466 277 0.09
467 117 0.04
468 428 0.14
469 110 0.04
470 201 0.06
471 286 0.09
472 105 0.03
473 236 0.08
474 277 0.09
475 356 0.11
476 617 0.20
477 102 0.03
478 21 0.01
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (474 bp):
AGACTGTTACGAGAATTGATTCTTGTCTTATTTAAGGGATGAACATTGTTTTTAAGGAAAATAGG
GCAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGT
TTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGG
CACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTGCGAAACGAAAGCATCAAT
ATGATGTATCTTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTA
TGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAA
AGTTTTTCTTGAGACATCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTTTTGGCTT
CACAATCTATAAATAACTG
Found at i:2222241 original size:942 final size:942
Alignment explanation
Indices: 2219609--2223657 Score: 5039
Period size: 942 Copynumber: 4.3 Consensus size: 942
2219599 TTGAAAAAAA
* * * * *
2219609 AGACTGTTACGAGAATTGATTCTTATCTTTTTTTAGGGGATGAACTTTGATTTTGAGGAAAATAG
1 AGACTGTTACGAGAATTGATGCTTGTC-TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAG
* * * * *
2219674 GGTAAAGATAAGATTTTCGTGCGAAAA-AAAATCATCAATATCATTTATCCTAATTAGGCGAATG
65 GGCAAAGAAAAGATTTTCATGC-AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATG
* ** * * * *
2219738 TGTTTATACTATCTAATCACAAAATGACTGTAGATCATTACTGGAATCCATGTTTGTCTCATTTG
129 TGTTTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG
* * ** * * * *
2219803 AGGC-CTAAACTTAAACTTTACAAAATTTGGTGGTAAAAATGCCTTTCTTGCAAAACGAAAGCAC
194 AGGCAC-GAACTTAGACTTTACAAAAAGTGGTGGGAAAAAAGCCTTTCTTGCGAAACGAAAGCAT
* * * * *
2219867 CAATATGATGTATCCTTAAGT--GAAGACTATGTTTATAGAGCCTTATGCTAAAAAGAATAGGGA
258 CAATATGATGTAT-CTTAA-TAAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGA
* *
2219930 TTAGTGTGAGTATTCATGTTTGT-TGTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGG
321 TTAGTATGAGTATTCATGTTTGTCT-TATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGG
* * * * * *
2219994 AAGGAATAGTTTGT-TATGC-ATCACCAAAGCATCAATGTCATGTATCTTAATGAATGGAATGTG
385 AA-AAAAAGTTT-TCT-TGCGA-CATCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTG
* * * * * * * *
2220057 TTTTGGCTTTC-TAATCTAG-AAAAACAATGGAAACTATTAAGAGAATCGATGCTTGTCTTATTT
446 TTTTGGC-TTCACAATCTTGAAAAAACTA-CGACAGT-TT-CGAGAATCGATTCTTGTCTTATTT
* * *
2220120 AAGGG-ATGAACCTTGTTTT-AAGGAAAATAGGGCGAAGAAAAGGTTTCTATGCAAAA-AAAATC
507 -AGGGTATGAACATTGTTTTAAAGGAAAATA-GGC-AA-AGAA--TTTCCATGCAAAAGAAAATC
* * *
2220182 ATCAATATCATTTATCCTAATGAGGAGAATGTATTTATAGTGCCTAATCACAAAATGAATGAAGA
566 ATCAATATCA-TT-TCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATAAATGAAGA
* ** ** * *
2220247 TCATTACCAGAATCCACATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAATTTAGT-GA
629 TCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGG
* * *
2220311 AAAAAAGCC--T-TT---AAATGAAAGCATCAATATGATGTATCCTAAAGAGAAGACTATGTTTA
694 AAAAAAGCCTTTCTTGCGAAACGAAAGCATCAATATGATGTATCTTAATGAGAAGACTATGTTTA
* * * * **
2220370 TGGAGCCTTATCCTAAAAAGAATAGGGATTAGTATAAGTATTCATGCTTGTCAAATTTAAGAGAC
759 TGGTGCCTAATCCTAAAAAGAATAGGGATTAATATAAGTATTCATGTTTGTCTTATTTAAGAGAC
* * * ** * *
2220435 AAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTG-CGATATTAGAGCATCAATG
824 AAACTTTGATTCTATCAAAAATGGTAGAAAGAAAAGCTTTTCTTGTAGACACCAAAGCTTCAATG
* * * *
2220499 TCATGTATCTTAAAGAAGGAAATGTGTTTTGGCTTCCCAATCTAGTAAAGAATGG
889 TCATGTATCCTAACGAAGGGAATGTGTTTTGGCTTCCCAATCTA-TAAATAATGG
* * * * *
2220554 AGACTGTTACGAGAA-TCATTGCTTGTCTTA-TTAGGGGATAAACATTAATTTTAAGGAAAATAG
1 AGACTGTTACGAGAATTGA-TGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAG
* * * * * * *
2220617 GGCAAGGCAATGATTTCCATCCAAAAGTAAATCATCAAAATCATTTATCCTAATGAGGAGAATGT
65 GGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
* * * * *
2220682 GTTTATAGTGCCTAATCACAAAATGAGTGAAGATCATTACTAGAATCCATGTCTGTCTCTTTTAA
130 GTTTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA
* * *
2220747 GGCATGAACTTAGACTTTACAAAAATTGGT-GGAAAAAAGCCTTTCTTGCGAAATGAAAGCATCA
195 GGCACGAACTTAGACTTTACAAAAAGTGGTGGGAAAAAAGCCTTTCTTGCGAAACGAAAGCATCA
* * *
2220811 ATACGATGTATCCTAA-AGAGGAGACTATGTTTAT-GTGCCTAATCCTAAAAAGAATGGGGATTA
260 ATATGATGTATCTTAATA-AGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTA
* * * * **
2220874 GCATGAGTGTTCATGTTTTTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAATGGT-GAAAA
324 GTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAAA
* * * * *
2220938 GAAATGTAATTCTTGCGGA-ATCAAAGAATGAATGTCATGTATCCAAATAAAGGAAATGTGTTTT
389 -AAA-GT-TTTCTTGC-GACATCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTTTT
* * * * *
2221002 GGCTTCACAATCTTGAAAAGAACTAAGACAGTTACAAAAATCGATTCTTGTCTTATTTAAGGTAT
450 GGCTTCACAATCTTGAAAA-AACTACGACAGTTTCGAGAATCGATTCTTGTCTTATTTAGGGTAT
* * * * *
2221067 GAACATTGTTTTAAAGGAAAAT-GGCAAGAAAATATTCTTATGAAAAAGAAAATCATCAATGTTA
514 GAACATTGTTTTAAAGGAAAATAGGCAA-AGAAT-TTC-CATGCAAAAGAAAATCATCAATATCA
* * *
2221131 TTTCCTAATGAGGAGAATGTGTTTATAGCGCCTAATCACAAAATAAATGAAGATCATTACTGGAA
576 TTTCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAA
2221196 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCCTTT
641 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCCTTT
* *
2221261 CTTGCGAAACGAAAGCATCAATATGATGTATCTTAATGAGAAAACTATGTTTATGGTTCCTAATC
706 CTTGCGAAACGAAAGCATCAATATGATGTATCTTAATGAGAAGACTATGTTTATGGTGCCTAATC
*
2221326 CTAAAAAGAAT-GGGAATTAATATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
771 CTAAAAAGAATAGGG-ATTAATATAAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
* * *
2221390 CTATCAAAAATGGTAGAAGGAAAAGTTTTTCTTGTAG-CACCAAAGCTTCAATTTCATGTATCCT
835 CTATCAAAAATGGTAGAAAGAAAAGCTTTTCTTGTAGACACCAAAGCTTCAATGTCATGTATCCT
2221454 AACGAAGGGAATGTGTTTTGGCTTCCCAATCTCATAAATAATGG
900 AACGAAGGGAATGTGTTTTGGCTTCCCAATCT-ATAAATAATGG
* *
2221498 AGACTGTTACGAGAATTGATACTTGTCTTATTTAAGGGATGAACTTTGTTTTTAAGGAAAATAGG
1 AGACTGTTACGAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGG
* *
2221563 GCATAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTG
66 GCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG
*
2221628 TTTATAGTGCCTAATCACAAAATAAATAAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAG
131 TTTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAG
*
2221693 GCACGAACTTAGACTTTACAAAAAGTGGTGGGAAAAAAGCCTTTCTTGCGAAGCGAAAGCATCAA
196 GCACGAACTTAGACTTTACAAAAAGTGGTGGGAAAAAAGCCTTTCTTGCGAAACGAAAGCATCAA
* * *
2221758 TATGATGTATCTTAATAACAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGT
261 TATGATGTATCTTAATAAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGT
* * *
2221823 ATAAGTATTCATGTTTGTCTTATTTAAGAGACCAACTTTGATTCTATTAAAAACAGTGGAAAAAA
326 ATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAAAAA
* *
2221888 AGCTTTTCTTGCGACATCAAAGCGTCAATGTCATGTATCCTATTAAAGGGAATGTGTTTTGGCTT
391 AG-TTTTCTTGCGACATCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTTTTGGCTT
* *
2221953 CACAATCTTGAAATAAACTGCGACAGTTTCGAGAATTGATTCTTGTCTTATTTAGGGTATGAACA
455 CACAATCTTGAAA-AAACTACGACAGTTTCGAGAATCGATTCTTGTCTTATTTAGGGTATGAACA
* *
2222018 TTGTTTTAAAAGAAAATAGGC-AAG-ATTTCCATGCAAAAGAAAATCATGAATATCATTTCCTAA
519 TTGTTTTAAAGGAAAATAGGCAAAGAATTTCCATGCAAAAGAAAATCATCAATATCATTTCCTAA
* *
2222081 TAAGGAGAATGTGTTTATAGTACCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGCT
584 TAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTT
* * * *
2222146 TGTCTCATTTGAGGCATGAACTTAGACTTTACCAAAAGTGGTGGGAAAAAAGCCTTTCGTGCGAA
649 TGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTGCGAA
* * * *
2222211 GCGAAAGGATCAATATGATGTATCTTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAG
714 ACGAAAGCATCAATATGATGTATCTTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAG
* * * *
2222276 AATAGGGATTAGTATAAGTATTCATGTTTGTTTTATTTAAGACACCAACTTTGATTCTATCAAAA
779 AATAGGGATTAATATAAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAA
* * ** * *** *
2222341 ACGGTGGAAAGAAAAGCTTTTC-T-TACGACATTAAAGCCTCAATGTCATGTATCCTATTAAAAG
844 ATGGTAGAAAGAAAAGCTTTTCTTGTA-GACACCAAAGCTTCAATGTCATGTATCCTAACGAAGG
*
2222404 GAATGTGGTTTTGGCTTCACAATCT-TGAAATGAACT--
908 GAATGT-GTTTTGGCTTCCCAATCTAT-AAAT-AA-TGG
* * * * * * *
2222440 ACGACAGTTTCAAGAATTGATTCTTGTCTTATTTATGGTACGAA-TATTG-TTTTAAAGGAAAAT
1 A-GACTGTTACGAGAATTGATGCTTGTCTTATTTAAGGGATGAACT-TTGATTTT-AAGGAAAAT
* * *
2222503 A-GGCAAAGAAAAAATTTTCATGCAAAAGGAAATCATCAATATCATTTATCCTAATGAGGTGAAT
63 AGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
* *
2222567 GTGTTTATAGTGCCTAATCACAAAATAAGTGAACATCATTACTAGAATCCGA-GTTTGTCTCATT
128 GTGTTTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCC-ATGTTTGTCTCATT
*
2222631 TGAGGCACGAACTTAGACTTTACAAAAAGTGGTTGGAAAAAAGCCTTTCTTGC-AAAGCGAAAGC
192 TGAGGCACGAACTTAGACTTTACAAAAAGTGGTGGGAAAAAAGCCTTTCTTGCGAAA-CGAAAGC
* * * * *
2222695 ATCAATATGATATATCTTAATGAGAAGACTATGTTTATGGTGGCTAATCCTGAAAACAATGGGGA
256 ATCAATATGATGTATCTTAATAAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGA
* *
2222760 TTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACCAACTTTGATTCTATAAAAAACCAGTGG
321 TTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA-CAGTGG
*
2222825 AAAGAAAAGTTTTTCTTGCGACATCAAAGCATCAATGTCATGTATCCTATTAAAGGGAATGTGTT
385 AAA-AAAAG-TTTTCTTGCGACATCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTT
* * *
2222890 TTGG-TTGCACTATCTTGAAATGAACTACGACAGTTTCGAGAAGT-GAATCTTGTCTTATTTAGG
448 TTGGCTT-CACAATCTTGAAA-AAACTACGACAGTTTCGAGAA-TCGATTCTTGTCTTATTTAGG
* * * *
2222953 GTAGGAACATTGTTTTAAGGGAAGATAGGCAAAGAATAGATTTCCTATGCAAAAGAAACTCATCA
510 GTATGAACATTGTTTTAAAGGAAAATAGGCAAAG---A-ATTTCC-ATGCAAAAGAAAATCATCA
* ** * * * *
2223018 ATATCTTTTCCTAATAAAAAGAATGTGGTTATAGTTCTTAATCACAAAATAAATAAAGTAT-ATT
570 ATATCATTTCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATAAATGAAG-ATCATT
* * * *
2223082 ACTAGAATCCATGTTTGTCTCACTTGAAGCACAAACTTAGCCTTTACAAAAAATGGTGGG-AAAA
634 ACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAA
* * *
2223146 AGCCTTTCTTGCAAAACGAAAGCATCAATATGATGTATCTTAACGAGAAGACTATGTTTGTGGTG
699 AGCCTTTCTTGCGAAACGAAAGCATCAATATGATGTATCTTAATGAGAAGACTATGTTTATGGTG
* * *
2223211 CCTAATCCTAAAAAGAATGGGGATTAATATGAGTATTGATGTTTGTCTTATTTAAGAG---AACT
764 CCTAATCCTAAAAAGAATAGGGATTAATATAAGTATTCATGTTTGTCTTATTTAAGAGACAAACT
* * * * *
2223273 TTGATTCTATCAAAAATGGTAGAAGGAAAAGTTTTTCTTGCA-ACACCAAAGCTTCAATTTCATT
829 TTGATTCTATCAAAAATGGTAGAAAGAAAAGCTTTTCTTGTAGACACCAAAGCTTCAATGTCATG
* **
2223337 TATCCTAACGAAGGGAATGTGTTTTGGCTTCCCAATCTCGTAAGCAATGG
894 TATCCTAACGAAGGGAATGTGTTTTGGCTTCCCAATCT-ATAAATAATGG
* *
2223387 AGACTGTTATGAGAATTGGTGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGG
1 AGACTGTTACGAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGG
*
2223452 GTAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG
66 GCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG
* *
2223517 TTTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTAAG
131 TTTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAG
* * * * * * * * *
2223582 GCATGAACTCAGGCTTTATAAAAAATGGTGGGAGAAAAGCCTTTCTTGTGAAACCAACGCATCAA
196 GCACGAACTTAGACTTTACAAAAAGTGGTGGGAAAAAAGCCTTTCTTGCGAAACGAAAGCATCAA
2223647 TATGATGTATC
261 TATGATGTATC
2223658 CTAGAGAGAA
Statistics
Matches: 2707, Mismatches: 321, Indels: 150
0.85 0.10 0.05
Matches are distributed among these distances:
936 1 0.00
937 106 0.04
938 27 0.01
939 21 0.01
940 44 0.02
941 149 0.06
942 684 0.25
943 251 0.09
944 368 0.14
945 204 0.08
946 250 0.09
947 347 0.13
948 10 0.00
949 1 0.00
950 119 0.04
951 123 0.05
952 2 0.00
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.32
Consensus pattern (942 bp):
AGACTGTTACGAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGG
GCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG
TTTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAG
GCACGAACTTAGACTTTACAAAAAGTGGTGGGAAAAAAGCCTTTCTTGCGAAACGAAAGCATCAA
TATGATGTATCTTAATAAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGT
ATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAAAAA
AGTTTTCTTGCGACATCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTTTTGGCTTC
ACAATCTTGAAAAAACTACGACAGTTTCGAGAATCGATTCTTGTCTTATTTAGGGTATGAACATT
GTTTTAAAGGAAAATAGGCAAAGAATTTCCATGCAAAAGAAAATCATCAATATCATTTCCTAATA
AGGAGAATGTGTTTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTG
TCTCATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTGCGAAAC
GAAAGCATCAATATGATGTATCTTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAA
TAGGGATTAATATAAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAT
GGTAGAAAGAAAAGCTTTTCTTGTAGACACCAAAGCTTCAATGTCATGTATCCTAACGAAGGGAA
TGTGTTTTGGCTTCCCAATCTATAAATAATGG
Found at i:2226109 original size:13 final size:13
Alignment explanation
Indices: 2226090--2226131 Score: 66
Period size: 13 Copynumber: 3.2 Consensus size: 13
2226080 ATAGTAACCC
2226090 ATGTATCGATACA
1 ATGTATCGATACA
* *
2226103 TTGTATCGATATA
1 ATGTATCGATACA
2226116 ATGTATCGATACA
1 ATGTATCGATACA
2226129 ATG
1 ATG
2226132 AACATTGCCT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.12, G:0.17, T:0.36
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2232420 original size:19 final size:20
Alignment explanation
Indices: 2232375--2232424 Score: 66
Period size: 19 Copynumber: 2.5 Consensus size: 20
2232365 CTACCACTTT
* *
2232375 CATGTATCAATACAATTGAG
1 CATGTATCGATACAATTGAA
*
2232395 TATGTATCGATACAA-TGAA
1 CATGTATCGATACAATTGAA
2232414 CATGTATCGAT
1 CATGTATCGAT
2232425 TCATTATATC
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
19 13 0.50
20 13 0.50
ACGTcount: A:0.38, C:0.14, G:0.16, T:0.32
Consensus pattern (20 bp):
CATGTATCGATACAATTGAA
Found at i:2233738 original size:475 final size:474
Alignment explanation
Indices: 2232739--2237665 Score: 5035
Period size: 475 Copynumber: 10.5 Consensus size: 474
2232729 CAAAACCAAG
* * * *
2232739 ATCCTAACAGAGGAGAATGTGTTTATAGTGCCTAGTCACAAAATGAATGAAGAT-ATTTACTAAA
1 ATCCTAA-TGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA-TTACTAGA
** * * * *
2232803 ATCCATTTTTGTCTCATTTGAGGCACAAACTTAGACTTCACAAAATTTGGT-AGCAAAAAAGCCT
64 ATCCAAGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAATTTGGTGAGGAAAAAAGCCT
* * * * *
2232867 TTCTTGCGAAACCAAAGCATCAATGTGATTTTTCCTATAA-AGAAGACTATGTTTTTGGT-CCTT
129 TTCTTGCGAAACGAAAGCATCAATATGATGTATCCTA-AAGAGAAGACTATGTTTATGGTGCCTT
* * * * *
2232930 ATCGTGAAAAGAATGGAGACTAGTATGAGTATTCATGTTTGTCTCATTTAAGAGACAAATTTTGA
193 ATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* * *
2232995 TTCTATTAAAAACAGTAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCC
258 TTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCC
* *
2233060 TAATG-AGGGAATGTGTTTTGGTTTCACAATCTTGAAAAGAACTAAGACAGTTATGAGAATCGAT
323 TAATGAAGGGAATGTGTTTTGGCTTCACAATCTTGAAAAGAACTAAGACTGTT-TGAGAATCGAT
* * * * * * *
2233124 TCTTATCTTATTTAAGGTATAAACATTGTTTTAAAGGAAAACAGGCAAAGAAAAAACTCTCATGC
387 TCTTGTCTTATTTAAGGTATGAATATTGTTTTAAAGG-AAATAGGCAAAGAAAAGATTTTCATGC
*
2233189 CAAAGAAAATCATCAATATCATTT
451 AAAAGAAAATCATCAATATCATTT
* * *
2233213 ATCCTAAAGTGGAGAATATGTTTATGGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
1 ATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
*
2233278 CCAAGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAATTTGGTGAGAAAAAAAGCCTTT
66 CCAAGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAATTTGGTGAGGAAAAAAGCCTTT
* * * * * *
2233343 CTGGCAAAATGAAAGCATCAAAATGATGCATCGTAAAGAGAAGACTATGTTT-TGGTGCCTTATC
131 CTTGCGAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTTATC
*
2233407 CTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTT
196 CTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
* * ** * *
2233472 TATCAAAAACGGTGGAAAAAAAAGCTTTTCTTACGACATTAAAGCATAAATCTCATGTAT-CTCA
261 TATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT-A
** * *
2233536 ATGAAAAGAATGTGTTTTGGCCTCACAATCTTGAAAAGAAGTAAGACAT-TTTGGAGAATCGATT
325 ATGAAGGGAATGTGTTTTGGCTTCACAATCTTGAAAAGAACTAAGAC-TGTTT-GAGAATCGATT
* * *
2233600 CTTGTCTTATTTAAGTTATGAATATTGTTTTAAAAGGAAAGAGGCAATA-AAAAGATTTTTATGC
388 CTTGTCTTATTTAAGGTATGAATATTGTTTT-AAAGGAAATAGGCAA-AGAAAAGATTTTCATGC
2233664 AAAAGAAAATCATCAATATCATTT
451 AAAAGAAAATCATCAATATCATTT
* * * *
2233688 ATCCTAATGAGGAGAATGTGTTTATAGTGCTTAATCGCAAAATGAATGAAGATCGTTACTAGAAT
1 ATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* * * * *
2233753 CCAAGTTTGTCTCATTTGTGGCACGAACTTAAAATTTACAAAATTTGGT-AGGCAAAAAGGCCTT
66 CCAAGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAATTTGGTGAGG-AAAAAAGCCTT
* * * * *
2233817 TCCTACGAAACGAAAGCATCAATATGATGTATCTTAAAAAGAAGACTATGTTTATGTTGCCTTAT
130 TCTTGCGAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTTAT
* * *
2233882 CTTGAAAAGAATGGGGATTAGCATGAGTATTTATGTTTGTCTTATTTAAGAGACAAACTTTGATT
195 CCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
* ** *
2233947 CCATCAAAAATAGTGGAAAGAAAAACTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTA
260 CTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTA
* * * * * *
2234012 ATG-AGGGAATGTGTTTTGGCTTCCCAAACACT-AAAA-AAATGGAGACTGTTATGAGAATAGAT
325 ATGAAGGGAATGTGTTTTGGCTTCACAATC-TTGAAAAGAACT-AAGACTGTT-TGAGAATCGAT
* * * * *
2234074 AC-T-T-TGATTT----TATG---A-------AAA--ATAT-GGTAAAAAAAAGATTTTCATGCA
387 TCTTGTCTTATTTAAGGTATGAATATTGTTTTAAAGGAAATAGGCAAAGAAAAGATTTTCATGCA
*
2234119 AAA-AAAATCATTAATATCATTT
452 AAAGAAAATCATCAATATCATTT
* * *
2234141 ATCCTAATGAGGTGAATGTGTTTATAGTGCCAAATCACAAAATGAATGAAGATCATTACTAGAAT
1 ATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* * * * * *
2234206 CCAAGTTTGCCTCT-TTTGAGGCATGAACTTAGACTTCATAGAATATGGTG-GGAAAAAAGCCTT
66 CCAAGTTTGTCT-TATTTGAGGCACGAACTTAGACTTTACAAAATTTGGTGAGGAAAAAAGCCTT
* * * * *
2234269 TCTTGCGACATGAAAGCGTCAATACGATGTATCGTAAAGAGAAGACTATGTTTATGGTGCCTTAT
130 TCTTGCGAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTTAT
* * * * * * *
2234334 CTTGAAAAGAATAGAGATTAGTATGAGTATTCATGTTTGCCTTATTCAAAAGA-AAGACATTGAT
195 CCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA-ACTTTGAT
* * * ** * * *
2234398 TTTATCAAAAATGGT-GAAAGGAAAAG-TCTTTCATATGACCCCAAAGTATCAATTTCATGTATC
259 TCTATCAAAAACGGTGGAAA-GAAAAGCT-TTTCTTGCGACACCAAAGCATCAATGTCATGTATC
* * * * * * ** * *
2234461 CTAATGAAGGCACTGTGTTTTGGC-TCCCAATCTCGTAAAGAGCGGAGATTGTTAGGAGAATCGA
322 CTAATGAAGGGAATGTGTTTTGGCTTCACAATCTTGAAAAGAACTAAGACTGTT-TGAGAATCGA
* * * * * * *
2234525 TGCTTGTCTTATTTAAGGGATGAACT-TTGATATT-AAGGAAAATAAGGTAAAGAAAAGGTCTCC
386 TTCTTGTCTTATTTAAGGTATGAA-TATTG-TTTTAAAGG-AAAT-AGGCAAAGAAAAGATTTTC
*
2234588 ATTG-AAAAGAAAATCTTTC-ATATCATTT
447 A-TGCAAAAGAAAATC-ATCAATATCATTT
* * *
2234616 ATCTTAATGAGGAGAATATGTTTATAGTGCCTAATGACAAAATGAATGAGGATCATTACTAGAAT
1 ATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* * * ** *
2234681 CCATGTTTGTCTCT-CTTGAGGCACAAACTTAGACTTTACAAAAAATGGTG-GGAAAAAGGCCTT
66 CCAAGTTTGTCT-TATTTGAGGCACGAACTTAGACTTTACAAAATTTGGTGAGGAAAAAAGCCTT
** * * * *
2234744 TCTTGCGAAACGAAAGTGTCAATATGATGCATCCTAATGAGAAAACTATGTTTATGTTGCCTTAT
130 TCTTGCGAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTTAT
* *
2234809 CCTAAAAAGAATGGGGATT-GTTATGAGTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGAT
195 CCTGAAAAGAATGGGGATTAG-TATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
* * * * * *
2234873 TCTATCAAAAATGGTGGAAGGAAAAGTTTTTCTTGTGACATCAAAGCATCAATGTCATTTATCCT
259 TCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT
* * * * * *
2234938 AACGAAGGGAATGTGTTTTGGCTTCACAATCTTGAAAAAAAACTAACACAGTTACGAGAATTGAT
324 AATGAAGGGAATGTGTTTTGGCTTCACAATCTTG-AAAAGAACTAAGACTGTT-TGAGAATCGAT
** **
2235003 TCTTGTCTTATTTAAGGTATGAGCATTGTTTTAAAGGAAAATAGGCAAAGAAAAGATTACCATGC
387 TCTTGTCTTATTTAAGGTATGAATATTGTTTTAAAGG-AAATAGGCAAAGAAAAGATTTTCATGC
* **
2235068 AAAAGAAAATCATGAATATTGTTT
451 AAAAGAAAATCATCAATATCATTT
* *
2235092 ATCCTAATGAGAAGAATATGTTTATAGTGCCTAAGCACAAAATGAATGAAGATCATTACTAGAAT
1 ATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* ** * *
2235157 CCAAGTGTGTCTCGTTTGAGACACGAACTTAGACTTTACAAAATTTGGT-AGGGAAAAA-CCTTT
66 CCAAGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAATTTGGTGAGGAAAAAAGCCTTT
* * *
2235220 CTTGCGAAACCAAAGCATTAATATGATGTATCATAAAGAGAAGACTATGTTTATGGTGCCTTATC
131 CTTGCGAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTTATC
* * * * *
2235285 CTAAAAAGAATGGCGATTAGTATGAGTATTCATGTTTGTCTTATTTTAGAGGCAAACATTGATTC
196 CTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
* * * * *
2235350 TATCAAAAACAGTGGAAAAAAAAGCTTTTCTTGCCACACCAAAGCATTAATGTCATGCATCCTAA
261 TATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAA
* * ** ** * * **
2235415 AG-AGGGAATGTGTTTTGGCTTCCCAAAGTTTCAAAG-ATTGGAGACTGTTACAAGAATCGATTC
326 TGAAGGGAATGTGTTTTGGCTTCACAATCTTGAAAAGAACT-AAGACTGTT-TGAGAATCGATTC
* *
2235478 TTGTCTTATTT-A---AT---T-TTG---TGAA--AAATAAGGCAAAGAAAAGATTTCCATGC-A
389 TTGTCTTATTTAAGGTATGAATATTGTTTTAAAGGAAAT-AGGCAAAGAAAAGATTTTCATGCAA
* *
2235529 AA-AAAATCATTAATATCGTTT
453 AAGAAAATCATCAATATCATTT
*
2235550 ATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCAAAAAATGAATGAAGATCATTA-TAAGAA
1 ATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACT-AGAA
* * * * * ** * * *
2235614 TCCATGTTTGTCATATTTAAGGCGCAAACTTAGACTTTACAAAAACTGG-AAGGAAGAAAGTCTT
65 TCCAAGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAATTTGGTGAGGAAAAAAGCCTT
* * * * *
2235678 TCTTGAGAAATC-AAAGTATCGATATCATATATCC-AAATGAGAAGACTATGTTTATGGTGCCTT
130 TCTTGCGAAA-CGAAAGCATCAATATGATGTATCCTAAA-GAGAAGACTATGTTTATGGTGCCTT
* * * *
2235741 ATCCTGAAAAGAATGGGGATTAGTATAAGTATTTATGTTTATCTTA-TTAAGGGACAAACTTTGA
193 ATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* ** * * * * *
2235805 TTATATCAAAAACAATAGAAGGAAAAG-TTTATCGTGTGACACCAAAGCATCAATTTCATGTATC
258 TTCTATCAAAAACGGTGGAAAGAAAAGCTTT-TCTTGCGACACCAAAGCATCAATGTCATGTATC
* * * * ** * * *
2235869 CTAATAAAGAGAATGTGTTTTGGC-TCCCAATCTCGTGAAGAA-TGGAGATTGTTACGAGAATCG
322 CTAATGAAGGGAATGTGTTTTGGCTTCACAATCTTGAAAAGAACT-AAGACTGTT-TGAGAATCG
* * * * * *
2235932 ATGCTTGTTTTATTTAAGAG-ATTAACTTTTATTTT-AAGAAAAATAGGGCAAAGAAAAGATTTT
385 ATTCTTGTCTTATTTAAG-GTATGAA-TATTGTTTTAAAG-GAAATA-GGCAAAGAAAAGATTTT
*
2235995 CATGCAAAACAAAATCATCAATATCATTT
446 CATGCAAAAGAAAATCATCAATATCATTT
* * * *
2236024 ATCCTAATGAGGAGAATTTATTTATAGTGCCTAATCACAAAATGAATAAAGATAATTACTAGAAT
1 ATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* * * * * * *
2236089 CCATGTTTGTCTCACTTGAGGCACAAACTCAAACTTTACGAAAA-TTGGTG-GGAAAAACA-CTT
66 CCAAGTTTGTCTTATTTGAGGCACGAACTTAGACTTTAC-AAAATTTGGTGAGGAAAAA-AGCCT
* * * * *
2236151 TTCTTGCGAAACGAAAGCATTAATATGATGCATCCAAAAGAGAAAACTATGTTTATGGAGCCTTA
129 TTCTTGCGAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTTA
* * * **
2236216 TCCTAAAAAGAATGGGG-TTTGCATGAGTATTCATGTTTGTCTTATTTAAGAGACCCACTTTGAT
194 TCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
* * * *
2236280 TCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACATCAAATCATCAATTTCGT-TATCCT
259 TCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT
* * * * *
2236344 AATGAAGCGAATGTGTTTTGGCCTC-CTAAATATTGAAAAG-A-T-AGACTATTACGAGAATCGA
324 AATGAAGGGAATGTGTTTTGGCTTCAC--AATCTTGAAAAGAACTAAGACTGTT-TGAGAATCGA
* * * * * * *
2236405 TACTTCTCTCATTTAAGGGATAAACT-TTGATTTTATGAA--AAATAAGGTAAAAAAAAGATTTT
386 TTCTTGTCTTATTTAAGGTATGAA-TATTG-TTTTA--AAGGAAAT-AGGCAAAGAAAAGATTTT
*
2236467 CATGC-AAA-AAAATCATTAATATCATTT
446 CATGCAAAAGAAAATCATCAATATCATTT
* * * * * * *
2236494 ATCCTAATGA-GTGAATGTATTTATAGAGCCTAATCACAAAATGAATGAAGACCTTTACTAGAAA
1 ATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* * * * *
2236558 CCATA-TTTCTC-T-TTTAAGGCATGAACTTAGACTTTACATAAA-ATGGTGA-GAAAAAAGCTT
66 CCA-AGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACA-AAATTTGGTGAGGAAAAAAGCCT
** * * * * *
2236618 TTCTTGCGAAATAAAAGCATCAGTATGATATTTCCTAATGAAAAGACTATGTTTATGGTGCCTTA
129 TTCTTGCGAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTTA
* *
2236683 TCCTGAAAAGAATGGGGATTAGTATGAATATTCAAGTTTGT-TTATTTAAGAGACAAACTTTGAT
194 TCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
* * * * * * *
2236747 TCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGTGACATCAAAACATCAATATTATGTATCCT
259 TCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT
* *
2236812 AATGAAGGGAATGTGTTTTGGCTTCACAATCTTAAAAAGAACTGAA-ACTGTTATGAGAATTGAT
324 AATGAAGGGAATGTGTTTTGGCTTCACAATCTTGAAAAGAACT-AAGACTGTT-TGAGAATCGAT
* * * * * ** *
2236876 TCTTATCTTATTTAAGATATGAACATTATTTTAAAGGAAAATACGCAAAGAAAAGATTCCCATGA
387 TCTTGTCTTATTTAAGGTATGAATATTGTTTTAAAGG-AAATAGGCAAAGAAAAGATTTTCATGC
*
2236941 AAAAGAAAATCATCCATATCATTT
451 AAAAGAAAATCATCAATATCATTT
* * * *
2236965 ATCCTAATGATGAGAATATGTTTATAGTGCCTAGTCACAAAATGAATGAAGATTATTACTAAAAT
1 ATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* * ** * **
2237030 CCATA-TTTGTCTCATTTGTA-GCACTATTTTCGACTACACAAAATTTGGTG-GGAAAAAAGCCT
66 CCA-AGTTTGTCTTATTTG-AGGCACGAACTTAGACTTTACAAAATTTGGTGAGGAAAAAAGCCT
** * * *
2237092 TTCTTGCGAAATAAAAGCATCAATATGATGTATCCTAAAGGGAAGACTTTGTTTAAGGTGCCTTA
129 TTCTTGCGAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTTA
* * * * *
2237157 TCTTGAAAAGAATGAGGATTAGCATGAGTATTCATGTTTGTCTTATTTTGAGAGACAAATTTTGA
194 TCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTA-TTTAAGAGACAAACTTTGA
* * * *
2237222 TTCTATCAAAAACGGTAGAAGGAAAAG-TTTTCTTGTGACATCAAAGCATCAATGTCATGTATCC
258 TTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCC
* * * * * *
2237286 TAAGGAACGGGAATGTGTTTTGGCTTCACATTCTTGAAAAAAACTGAGTCTGTTATGAGAATAGA
323 TAATGAA-GGGAATGTGTTTTGGCTTCACAATCTTGAAAAGAACTAAGACTGTT-TGAGAATCGA
* * * * * * *
2237351 TTCCTGTCTTATTTTAGGTTTGAACATTGTTTTAAAGGAAAATTGGCAAAGAAAATATTCAT-AT
386 TTCTTGTCTTATTTAAGGTATGAATATTGTTTTAAAGG-AAATAGGCAAAGAAAAGATT-TTCAT
2237415 GCAAAAGAAAATCATCAATATCATTT
449 GCAAAAGAAAATCATCAATATCATTT
* * *
2237441 ATCCTAATGAGGAGAATGTGTTTACAGTGCCAAATCACAAAATGAATGAAGATCATTACTAGAAT
1 ATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* * * * * * ** *
2237506 CCAAGTTTGCCGCT-TTTGAGACATGAACTAAGACGTTACAAAAAATAGTG-GGAAAAAAGCCTT
66 CCAAGTTTGTC-TTATTTGAGGCACGAACTTAGACTTTACAAAATTTGGTGAGGAAAAAAGCCTT
* * * * *
2237569 TCTTGCGAAACGAAAGCATCAAAATAATGAATCC-AAATGAGAAGACTAAGTTTATGTTGCCTTA
130 TCTTGCGAAACGAAAGCATCAATATGATGTATCCTAAA-GAGAAGACTATGTTTATGGTGCCTTA
* * *
2237633 TCTTAAAAAGATTGGGGATTAGTATGAGTATTC
194 TCCTGAAAAGAATGGGGATTAGTATGAGTATTC
2237666 TTCAACAACT
Statistics
Matches: 3724, Mismatches: 586, Indels: 284
0.81 0.13 0.06
Matches are distributed among these distances:
451 7 0.00
452 200 0.05
453 136 0.04
454 23 0.01
455 7 0.00
457 7 0.00
458 233 0.06
459 122 0.03
460 23 0.01
462 5 0.00
465 4 0.00
466 3 0.00
467 191 0.05
468 53 0.01
469 84 0.02
470 70 0.02
471 35 0.01
472 154 0.04
473 193 0.05
474 606 0.16
475 873 0.23
476 641 0.17
477 54 0.01
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (474 bp):
ATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
CCAAGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAATTTGGTGAGGAAAAAAGCCTTT
CTTGCGAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTTATC
CTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
TATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAA
TGAAGGGAATGTGTTTTGGCTTCACAATCTTGAAAAGAACTAAGACTGTTTGAGAATCGATTCTT
GTCTTATTTAAGGTATGAATATTGTTTTAAAGGAAATAGGCAAAGAAAAGATTTTCATGCAAAAG
AAAATCATCAATATCATTT
Found at i:2241717 original size:19 final size:20
Alignment explanation
Indices: 2241672--2241727 Score: 80
Period size: 19 Copynumber: 2.9 Consensus size: 20
2241662 CTACCACTTT
*
2241672 CATGTATCGATACAATTGAG
1 CATGTATCGATACAATTGAA
*
2241692 TATGTATCGATACAA-TGAA
1 CATGTATCGATACAATTGAA
2241711 CATGTATCGATA-AATTG
1 CATGTATCGATACAATTG
2241728 TATCGATACA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
18 2 0.06
19 16 0.50
20 14 0.44
ACGTcount: A:0.38, C:0.12, G:0.18, T:0.32
Consensus pattern (20 bp):
CATGTATCGATACAATTGAA
Found at i:2243052 original size:475 final size:474
Alignment explanation
Indices: 2242036--2250858 Score: 8957
Period size: 475 Copynumber: 18.6 Consensus size: 474
2242026 CAAAACCAAG
* * * * *
2242036 ATCCTAACAGAGGAGAATGTGTTTATAGTGTCTAGTCACAAAATGAATGAAGATCTTTACTAAAA
1 ATCCTAA-TGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAA
* * * * *
2242101 TCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTCACAAAATTTGGT-AGCAAAAAAGCCTT
65 TCCAAGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAATTTGGTGAGGAAAAAAGCCTT
* * *
2242165 TCTTGCGAAACCAAAGCATCAATGTGATGTATCCTATAA-AGAAGACTATGTTTTTGGT-CCTTA
130 TCTTGCGAAACGAAAGCATCAATATGATGTATCCTA-AAGAGAAGACTATGTTTATGGTGCCTTA
* * * * *
2242228 TCGTGAAAAGAATGGAGACTAGTATGAGTATTCATGTTTGTCTCATTTAAGAGACAAATTTTGAT
194 TCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
** * * * *
2242293 TCTATCAAAAATAGTAGAAAGAAAGGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT
259 TCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT
* * * * * * *
2242358 AATG-AGGGAATGTGTTTTGGCTTCACAATCTTGAAAAGAACTAAGACAGTTACAAGAATCGATT
324 AATGAAAGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAA-TGAGACATTTTCGAGAATCGATG
* * * * **
2242422 CTTATCTTATTTAAGGTATGAACATTGTTTTAAAGGAAAACAGGCAAAGAAAA-AACTCTCATGC
388 CTTGTCTTATTTAAGGGATGAA-TTTGTTTTAAAGGAAAATAGGCAAAGAAAAGATTTC-CATGC
*
2242486 GAAAGAAAATCAT-AAGTATCATTT
451 AAAAGAAAATCATCAA-TATCATTT
* * * * * * *
2242510 ATCGTAAAGTGGAGAATATGTTTATGGTGTCTAATCACAAAATGAATGAAAATCATTACTAGAAT
1 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* * *
2242575 CCAAGTTTGTCTTATTTGAGGCACGAACTTAGACATTACAAAATTTAGTGAGAAAAAAAGCCTTT
66 CCAAGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAATTTGGTGAGGAAAAAAGCCTTT
* * * *
2242640 CTTGCAAAACGAAAGCATCAAAATGATGCATCGTAAAGAGAAGACTATGTTT-TGGTGCCTTATC
131 CTTGCGAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTTATC
* * * *
2242704 CTAAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAGGAGACAAACTTTGATTT
196 CTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
* * ** * * *
2242769 TATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACATTAAAGCATCAATCTCATGTAT-ATCG
261 TATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT-A
* * * * * * *
2242833 ATGAAAAGAATGTGTTTTGGCCTCACAATCTTGAAAAGAAGTAAGACATTTTGGAGAATTGATTC
325 ATGAAAGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAA-TGAGACATTTTCGAGAATCGATGC
** * * * **
2242898 TTGTCTTATTTAAGTTATGAATATTGTTTTAAAGGGAAAGAGGCAAAGAAAAAATTTTTATGCAA
389 TTGTCTTATTTAAGGGATGAAT-TTGTTTTAAAGGAAAATAGGCAAAGAAAAGATTTCCATGCAA
2242963 AAGAAAATCATCAATATCATTT
453 AAGAAAATCATCAATATCATTT
* * *
2242985 ATCCTAATTAGGAGATTGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCGTTACTAGAAT
1 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* * * *
2243050 CCAAGTTTGTCTAATTTGTGGCACGAACTTAAAATTTACAAAATTTGGT-AGGCAAAAAAGCCTT
66 CCAAGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAATTTGGTGAGG-AAAAAAGCCTT
* * * * *
2243114 TCCTACGAAACGAAAGCATCAATATGATGTATCTTAAAGAGAAGACTATGTTTATGTTGCCTTTT
130 TCTTGCGAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTTAT
*
2243179 CCTGAAAAGAATGGGGATTAGTATGAGTATTTATGTTTGTCTTATTTAAGAGACAAACTTTGATT
195 CCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
* ** * **
2243244 CCATCAAAAATAGTGGAAAGAAAAACTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTA
260 CTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTA
* * * * *
2243309 ATG-AGGGAATGTGTTTTGGCTTCCCAAACACT-AAAAGAATGGAGAC-TGTTACGAGAATAGAT
325 ATGAAAGGAATGTGTTTTGGCTTCCCAATC-TTGAAAAGAAT-GAGACAT-TTTCGAGAATCGAT
* * * * * *
2243371 AC-T-T-TGATTT------T--A--TG----AAA--AATACA-GTAAAGAAAAGATTTCCACGCA
387 GCTTGTCTTATTTAAGGGATGAATTTGTTTTAAAGGAAAATAGGCAAAGAAAAGATTTCCATGCA
*
2243416 AAA-AAAATCATTAATATCATTT
452 AAAGAAAATCATCAATATCATTT
* * * *
2243438 ATCCTAATGAGGTGGATGTGTTTATAGTGTCAAATCACAAAATGAATGAAGATCATTACTAGAAT
1 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* * * * *
2243503 CCAAGATTGCCTCT-TTTGAGGCATGAACTTAGACTTTACAGAATATGGTG-GGAAAAAAGCCTT
66 CCAAGTTTGTCT-TATTTGAGGCACGAACTTAGACTTTACAAAATTTGGTGAGGAAAAAAGCCTT
* * * *
2243566 TCTTGCGACATGAAAGCATCAATACGATGTATCGTAAAGAGAAGACTATGTTTATGGTGCCTTAT
130 TCTTGCGAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTTAT
* * * * * *
2243631 CTTGAAAAGAATGGAGATTAGTATGAGTATTCATGTTTGCCTTATTCAAGAGTA-AGACATTGAT
195 CCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAG-ACAAACTTTGAT
* * * * * ** * * *
2243695 TTTATCAAAAGCGGTGAAAGGAAAAGTCTTTCATATGACCCCAAAGTATCAATTTCATGTATCCT
259 TCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT
* * *
2243760 AATG-AAGGCAATGTGTTTTGGC-TCCCAATCTTGTAAAGAGCTGAG--ATTGTTAGGAGAATCG
324 AATGAAAGG-AATGTGTTTTGGCTTCCCAATCTTGAAAAGA-ATGAGACATT-TT-CGAGAATCG
* * * *
2243821 ATGCTTGTCTTATTTAAGGGATGAACTTTGATATT-AAGGAAAATAAGGTAAAGAAAAGGTCTCC
385 ATGCTTGTCTTATTTAAGGGATGAA-TTTG-TTTTAAAGGAAAAT-AGGCAAAGAAAAGATTTCC
*
2243885 ATTG-AAAAGAAAATCTTTC-ATATCATTT
447 A-TGCAAAAGAAAATC-ATCAATATCATTT
* * *
2243913 ATCTTAATGAGGAGAATATGTTTATAGTGCCTAATGACAAAATGAATGAAGATCATTACTAGAAT
1 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* * * ** *
2243978 CCATGTTTGTCTCT-CTTGAGGCACAAACTTAGACTTTACAAAAAATGGTG-GGAAAAAGGCCTT
66 CCAAGTTTGTCT-TATTTGAGGCACGAACTTAGACTTTACAAAATTTGGTGAGGAAAAAAGCCTT
* * * * * * * * *
2244041 TCTTGCGAAACGAAAGCGTCAATATCATGCATCTTAATGAGAAAACAATGTTTATGTTGCCCTAT
130 TCTTGCGAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTTAT
*
2244106 CCTGAAAAGAATGGGGATT-GTTATGAGTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGAT
195 CCTGAAAAGAATGGGGATTAG-TATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
* * * *
2244170 TCTATCAAAAACAGTGGAAGGAAAAGTTTTTCTTGTGACATCAAAGCATCAATGTCATTTATCCT
259 TCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT
* * * * * * * *
2244235 AACG-AAGGAAATGTGTTTTGGCTTCACAATCTTGACAAAAAACTAAGATAGTTACGAGAATTGA
324 AATGAAAGG-AATGTGTTTTGGCTTCCCAATCTTGA-AAAGAA-TGAGACATTTTCGAGAATCGA
* * ** *
2244299 TTCTTGTCTTATTTAAGGTATGAGCGTTGTTTTAAAGGAAAATAGGCAAAGAAAAGATTACCATG
386 TGCTTGTCTTATTTAAGGGATGA-ATTTGTTTTAAAGGAAAATAGGCAAAGAAAAGATTTCCATG
* **
2244364 CAAAAGAAAATCATGAATATTGTTT
450 CAAAAGAAAATCATCAATATCATTT
* * * *
2244389 ATCCTAATGAGAAGAATATATTTATAGTGCCTAAGCACAAAATGAATGAAGATCATTACTAGAAT
1 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* ** * * *
2244454 CCAAGTGTGTCTCGTTTGAGACGCGAACTTAGACTTTACAAAATTTGGT-AGGGAAAAA-CCTTT
66 CCAAGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAATTTGGTGAGGAAAAAAGCCTTT
* * * * *
2244517 CTTGTGAAACCAAAGCATTAATATGATGTATCATAAGGGAGAAGACTATGTTTATGGTGCCTTAT
131 CTTGCGAAACGAAAGCATCAATATGATGTATCCTAA-AGAGAAGACTATGTTTATGGTGCCTTAT
* * * *
2244582 CCTAAAAAGAATGGCGATTAGTATGAGTATTCATGTTTGTCTTATTTTAGAGACAAACATTGATT
195 CCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
** ** * * * *
2244647 CTATCAAAAACAATGGAAAAAAAAAAGCTTTTCTTGCCACACCAAAGCATTAATGTCATGCATCC
260 CTATCAAAAACGGTGG--AAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCC
* ** ** * * *
2244712 TAATG-ATGGAATGTGTTTTGGCTTCCCAAAGTTTCAAAGATTGGAGAC-TGTTACAAGAATCGA
323 TAATGAAAGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAAT-GAGACAT-TTTCGAGAATCGA
*
2244775 TGCTTGTCTTATTT-A---AT---TTTG---T---GAAAAATAGGGCAAAGAAAAGATTTCCATG
386 TGCTTGTCTTATTTAAGGGATGAATTTGTTTTAAAGGAAAATA-GGCAAAGAAAAGATTTCCATG
*
2244827 C-AAA-AAAATCATTAATATCATTT
450 CAAAAGAAAATCATCAATATCATTT
* *
2244850 ATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCGA-AAAATAAATGAAGATCATTA-TAAGA
1 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC-ACAAAATGAATGAAGATCATTACT-AGA
* * * ** * * *
2244913 ATCCATGTTTGTCATATTTAAGGCAC-AACTTAGACTTTACAAAAACTGG-AAGGAAGAAAGTCT
64 ATCCAAGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAATTTGGTGAGGAAAAAAGCCT
* * * * *
2244976 TTCTTGTGAAATC-AAAGTA-CAATATCATATATCC-AAATGAGAAGACTATGTTTATAGTGCCT
129 TTCTTGCGAAA-CGAAAGCATCAATATGATGTATCCTAAA-GAGAAGACTATGTTTATGGTGCCT
* * * * * *
2245038 TATCTTGAAAAAAATGGGGATTAGTATAAGTATTTATGTTTATCTTA-TTAAGGGACAAACTTTG
192 TATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
* ** * * * * *
2245102 ATTATATCAAAAACAATAGAAGAAAAAGTTTTTCGTGTGACACCAAAGCATCAATTTCATGTATC
257 ATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
* * *
2245167 CTAAT-AAAGGGAATGTGTTTTGGC-TCCCAATCTCGTAAAGAATG-GAGATTGTTACGAGAATC
322 CTAATGAAA-GGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGAGACATT-TT-CGAGAATC
* * * *
2245229 GATGTTTGTTTTATTTAAGGGATGAACTTT-TATTTTAAGAAAAATAGGGCAAAGAAAAGATTTC
384 GATGCTTGTCTTATTTAAGGGATGAA-TTTGT-TTTAAAGGAAAATA-GGCAAAGAAAAGATTTC
*
2245293 CATGCAAAACAAAATCATCAATATCATTT
446 CATGCAAAAGAAAATCATCAATATCATTT
* * * * *
2245322 ATCCTAATCAGCAGAATTTGTTTATAGTGCCTAATCACAAAATGAATGAAGATAATTACTAAAAT
1 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* * * * * * *
2245387 CTATGTTTGTCTCACTTAAGGCACGAAC-TCGAACTTTACGAAAA-TTGGTG-GGAAAAATA-CT
66 CCAAGTTTGTCTTATTTGAGGCACGAACTTAG-ACTTTAC-AAAATTTGGTGAGGAAAAA-AGCC
* * * * *
2245448 TTTCTTGCGAAACGAAAGCATTAATATGATGCATCCAAAAGAGAAAACTATGTTTATGGAGCCTT
128 TTTCTTGCGAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTT
* * * * *
2245513 ATCCTAAAAATAATGGGGATTTGCATGAGTATTCATGTTTGTCTTATTTAAGAGACCAACTTTGA
193 ATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* * * * * *
2245578 TTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGACATCAAATCATCAATTTCAT-TATCC
258 TTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCC
* * * * *
2245642 TAATG-AAGCGAATGTGTTTTGGCTTCCTAAACATTAAAAAG-AT-AGAC-TATTACAAGAATCG
323 TAATGAAAG-GAATGTGTTTTGGCTTCCCAATC-TTGAAAAGAATGAGACAT-TTTCGAGAATCG
* * * * * * * * *
2245703 ATACTTCTCTCAATTAAGGGATAAACTTTGATTTT-ACGAAAAATAGGGTAAAAAAAAGATTTCC
385 ATGCTTGTCTTATTTAAGGGATGAA-TTTG-TTTTAAAGGAAAATA-GGCAAAGAAAAGATTTCC
*
2245767 ATGC-AAA-AAAATCATTAATATCATTT
447 ATGCAAAAGAAAATCATCAATATCATTT
* * * * * * *
2245793 ATCCTAATGA-GTGAATGTATTTATAGGGCGTAATCACAAAATGAATGAAGACCTTTACTAGAAA
1 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* * * * *
2245857 CCATA-TTT-CCCT-TTTAAGGCACGAACTTAGACTTTACATAAA-ATGGTGA-GAAAAAAGCTT
66 CCA-AGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACA-AAATTTGGTGAGGAAAAAAGCCT
** * * * * * *
2245917 TTCTTGCGAAATAAAAGCATCAGTATGATATTTCGTAATGAAAAGACTATGTTTATGGTGCCTTA
129 TTCTTGCGAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTTA
* * *
2245982 TCCTGAAAAGAATGGGGATTAGTATGAATATTCAAGTTTGTCTTATTTAGGAGACAAACTTTGAT
194 TCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
* * * *
2246047 TCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGTGACATCAAAACATCAATGTTATGTATCCT
259 TCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT
* * * * *
2246112 AATGAAGGGAATGTGTTTTGGCTTCACAATCTTAAAAAGAACTGAGAC-TGTTACGAGAATTGAT
324 AATGAAAGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAA-TGAGACAT-TTTCGAGAATCGAT
* * * * * * * * *
2246176 TCTTATCTTACTTAAGGTATGAACATTATTTTAAAGGAAAATAGGCAAAGACAAGATTCCCATGA
387 GCTTGTCTTATTTAAGGGATGAA-TTTGTTTTAAAGGAAAATAGGCAAAGAAAAGATTTCCATGC
*
2246241 AAAAGAAAATCATCCATATCATTT
451 AAAAGAAAATCATCAATATCATTT
* * * * * * *
2246265 ATCCTAATGATGAGAATATGTTTATAGTGCCTAGTTACAAAATGAATGAAGATTATTACTAAAAG
1 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* * * * *** *
2246330 CCATA-TTTGTCTCATTTGTGGCACGAATTTCGACAACACAAAATTTGGTG-GGAAAAAAACCTT
66 CCA-AGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAATTTGGTGAGGAAAAAAGCCTT
** *
2246393 TCTTGCGAAATAAAAGCATCAATATGATGTATCCTAAAGAGAAGACTATGTTTAAGGTGCCTTAT
130 TCTTGCGAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTTAT
* * * * *
2246458 CTTGAAAAGAATGAGGATTAGCATGAGTATTCATGTTTGTCTTATTTTGAGAGACAAATTTTGAT
195 CCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTA-TTTAAGAGACAAACTTTGAT
* * * * *
2246523 TTTATCAAAAATGGTAGAAGGAAAAGTTTTTCTTGTGACATCAAAGCATCAATGTCATGTATCCT
259 TCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT
* * * * * * * * * *
2246588 AAGGAAAGGAATTTGTTTTGGCTTCACATTCTT-AAAAAAAAGTAGGTCCGTTAT-GAGAATAGA
324 AATGAAAGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATG-A-G-ACATTTTCGAGAATCGA
* * * ** * * **
2246651 TTCTTGTTTTATTTTAGGTTTGAACATTGTTTTAAAGGAAAATTA-GCAAAGAAAATATTTATAT
386 TGCTTGTCTTATTTAAGGGATGAA-TTTGTTTTAAAGGAAAA-TAGGCAAAGAAAAGATTTCCAT
2246715 GCAAAAGAAAATCATCAATATCATTT
449 GCAAAAGAAAATCATCAATATCATTT
* * * *
2246741 ATCCTAATTAGGAGAAATGTG-TT-TA--GCCAAATCACAAAATTAATGAAGATTATTACTAGAA
1 ATCCTAATGAGGAG-AATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAA
* ** * * * **
2246802 TCCAAGTCTACCTCT-TTTGAGACACGAACTAAGACTTTATAAAAAATGGTG-GGAAAAAAGCCT
65 TCCAAGTTTGTCT-TATTTGAGGCACGAACTTAGACTTTACAAAATTTGGTGAGGAAAAAAGCCT
* * * * * * *
2246865 TTCTTTCGAAACGAAAGCATCAATATAATGAATCCGAATGAGAAGACTAAGTTTATGTTGCCTTA
129 TTCTTGCGAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTTA
* * *
2246930 TCTTAAAAAGATTGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
194 TCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
* * ** * * * * *
2246995 TCCAGT-AGAAATTGTGCAAAGAAAAGCTTTTCTTGCGACACTAAAGCAGCAATGTCATGTATCC
259 TCTA-TCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCC
* * * * * *
2247059 TAATG--AGGAAATGTATTTTGGCTTCCTAAACTTTAAAAGATTGGAGAC-TGTTAT-GAGAATT
323 TAATGAAAGG-AATGTGTTTTGGCTTCCCAATCTTGAAAAGAAT-GAGACAT-TT-TCGAGAATC
* * * *
2247120 GGTGCTTGTCGTATTTAAGGGATAAAATTTGGTTTTACAA--AAAATAGGGCAAATAAAAGATTT
384 GATGCTTGTCTTATTTAAGGGAT-GAATTT-GTTTTA-AAGGAAAATA-GGCAAAGAAAAGATTT
* ** *
2247183 TCATGC-AAA-AAAATTGTTAATATCATTT
445 CCATGCAAAAGAAAATCATCAATATCATTT
* * * *
2247211 ATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATAAAAAAATGAATGAAGATCATTACTAAAAT
1 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* ** *
2247276 CCAAGTGTGTCTCGTTTGAGGCACGAACTTAGACTTTACAAAATTTGGTG-GG-GAAAA-CCTTT
66 CCAAGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAATTTGGTGAGGAAAAAAGCCTTT
* * * * *
2247338 CTTGCGAAACCAAAGTATCAATATCG-TGTATCCTAAAGGGAAGATTATGTTCATGGTGCCTTAT
131 CTTGCGAAACGAAAGCATCAATAT-GATGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTTAT
* *
2247402 CCTGAAAAGAATGGGGATTTGTATGAGTATTCATGTTTATCTTATTTAAGAGACAAACTTTGATT
195 CCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
* * *
2247467 CTATCAAAAATGGTGGAAGGAAAAGTTTTTCTTGTGACACCAAATCATCAATGTCATGTATCCTA
260 CTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTA
* * * * * * * * *
2247532 A-CAAGGGAATGTGTTTTGGCATCCTAAACTTTAAAAGATTGGAGAC-TACTACGAGAATCGATG
325 ATGAAAGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAAT-GAGACAT-TTTCGAGAATCGATG
* * * * * *
2247595 CTTATCTTTTTTAAGGGATGAACTTCGATTTT--ACGAAAAGTCAAGCAAAGAAAAGATTTTCAT
388 CTTGTCTTATTTAAGGGATGAA-TTTG-TTTTAAAGGAAAA-T-AGGCAAAGAAAAGATTTCCAT
* * *
2247658 G--AAA-AAAATCATTAATATTAGTT
449 GCAAAAGAAAATCATCAATATCATTT
*
2247681 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAAAAAATGAATGAAGATCATTACTAGAAT
1 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* *
2247746 CCAAGTTTGTCTTATTTGAGGCA-TAGACTTAGACTTTACAAAATTTGGTG-GG-AAAAAGGCTT
66 CCAAGTTTGTCTTATTTGAGGCACGA-ACTTAGACTTTACAAAATTTGGTGAGGAAAAAAGCCTT
* *
2247808 TCTTG-TAAAGCCAAAGCATCAATATGATGTATCGC-AAAGAGAAGACTATGTTTATGGTGCCTT
130 TCTTGCGAAA-CGAAAGCATCAATATGATGTATC-CTAAAGAGAAGACTATGTTTATGGTGCCTT
* * * *
2247871 ATCCAGAAAAAAATAGAGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
193 ATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* * *
2247936 TTTTATCAAAAACGGTGAAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAAGGTCATGTATCC
258 TTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCC
* * * * *
2248001 TAAT-AAGGGAATGTGTTTTGGCTTCCCAACCTTTAAAAGATTGGAGAC-TGCTAT-GAGAATCG
323 TAATGAAAGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAAT-GAGACAT--TTTCGAGAATCG
* * *
2248063 ATGCTTGTCTTATATAAAGGATGAACTTTGATTTTGCAA--AAAATAGGGCAAAGAAAAGATTTC
385 ATGCTTGTCTTATTTAAGGGATGAA-TTTG-TTTT-AAAGGAAAATA-GGCAAAGAAAAGATTTC
* * *
2248126 TATGTAAAA-AAAATCATTAATATCATTT
446 CATGCAAAAGAAAATCATCAATATCATTT
* *
2248154 ATCCTAATGAAGAGAATGTGTTTATAGTGCCTAATCAAAAAATGAATGCAA-ATCATTACTAGAA
1 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG-AAGATCATTACTAGAA
* * * * *
2248218 TCCATGTTTGTCGTATTTGAGGCACGAACTTAGACTTTACAAAAATTGG-CAGGAAGAAAGCCTT
65 TCCAAGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAATTTGGTGAGGAAAAAAGCCTT
* * * * * * *
2248282 TCTTGTGAAACCAAAGTATTAATATCG-TATATCCTAATGAGAAGACTATATTTATGGTGCCTTA
130 TCTTGCGAAACGAAAGCATCAATAT-GATGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTTA
* * * * * *
2248346 TCCTAAAAAAAATGGGGAATAGTATGAGTATTCATGTTTGTCTTGTTTAAGAGATAAACTTTAAT
194 TCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
* * *
2248411 TCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGATAGCAAAGCATCAATTTCATGTATCCT
259 TCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT
* * * * *
2248476 AATGAAAGGAAGGTGTTTTGGC-TCCCAATCTCGTAAAGAATG-GAGATTGTTACGAGAATTGAT
324 AATGAAAGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGAGACATT-TT-CGAGAATCGAT
* * *
2248539 GCTTGTCTTATTTAAGGGATGAACTTTGACTTT-AAGGAATATAGGGCAAAGAAAAGATTTTCAT
387 GCTTGTCTTATTTAAGGGATGAA-TTTG-TTTTAAAGGAAAATA-GGCAAAGAAAAGATTTCCAT
* *
2248603 GCAAAAGGAAATCATCAATATTATTT
449 GCAAAAGAAAATCATCAATATCATTT
* * * *
2248629 ATCCTAATGA-GAAAATGTTTTTATTGTGCCTAATCACAAAATGAATGAAAATCATTACTAGAAT
1 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* * * * *
2248693 CCAAGTTTGTCTCT-TTTAAGGCACAAACTTAGACCTTACAAAA-CTGGTG-GGAAAAAAACCTT
66 CCAAGTTTGTCT-TATTTGAGGCACGAACTTAGACTTTACAAAATTTGGTGAGGAAAAAAGCCTT
* * * *
2248755 TCATGCGAAACGAAAGCATCAATATGATGTATACTAATGAGAAGACTATGTTTATGTTGCCTTAT
130 TCTTGCGAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTTAT
* *
2248820 CCTAAAAAGAATGGGGATTAGTATGAGTATTAATGTTTGTCTTATTTAAGAGACAAACTTTGATT
195 CCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
* * * ** *
2248885 CTATCAAAAATGGTGGAGGGAAAAGTTTTTCCTGTAACATCAAAGCATCAATGTCATGTATCCTA
260 CTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTA
* * * * *
2248950 ATGAAGGGAATGTGTTTTGGCTTCACAATCTTGAAAAGAACTGAGACAGTTACGAGAATCGATTC
325 ATGAAAGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAA-TGAGACATTTTCGAGAATCGATGC
* * *
2249015 TTGTCTTATTTAAGAGATGAACTTTCATTTT-AAGGAAAATAGGGCAAAGAAAAGATTTCAATGC
389 TTGTCTTATTTAAGGGATGAA-TTT-GTTTTAAAGGAAAATA-GGCAAAGAAAAGATTTCCATGC
*
2249079 TAAAGAAAATCATCAATATCATTT
451 AAAAGAAAATCATCAATATCATTT
2249103 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
1 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* * **
2249168 CCATGTTCGTCTCT-TTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGA-GAAAAAA-CCTT
66 CCAAGTTTGTCT-TATTTGAGGCACGAACTTAGACTTTACAAAATTTGGTGAGGAAAAAAGCC-T
* * * * * * *
2249230 TTCTTG-TATAAAGAACA-CATGAGTATGATGTATCCTAATGAGAAGACTATGTTCATGGTGCAT
129 TTCTTGCGA-AACGAA-AGCATCAATATGATGTATCCTAAAGAGAAGACTATGTTTATGGTGCCT
*
2249293 TATCCTGAAAAGAATGGGGATTAGTTTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
192 TATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
* ** ** * * *
2249358 ACTCTATCAAAAACAATGGAAGGAAAAGTTTACCTTGCCACACCAAAGCATAAATTTCATGTATC
257 ATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
* * * * *
2249423 CTAGT-AAAGGGAATGTGTTTTGGC-TCCCAATCTCGTAAAGAATG-GAGATTGTTACAAGAATT
322 CTAATGAAA-GGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGAGACATT-TT-CGAG-A--
* * *
2249485 GATGCTTGAAAAGAACTAAGTTAGTTACGAGAATCAATTCTTGTCTTATTTAAGGTATGAACATT
381 -AT-C-------G-A-T--G---CTT----G-------T-----CTTATTTAAGGGATGAA-TTT
* * * * *
2249550 ATTTTAAAGGAAAATAGGCAAAGAATAGATTCCCATGCAAAAGAAATTCATCCATATCATTT
413 GTTTTAAAGGAAAATAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTT
* * * *
2249612 ATCTTAATGAGGAGAATATGTTTATAGTGCCTAATAACAAAATGAATGAAAATCATTACTAGAAT
1 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* * * *
2249677 CCATGTTTGCCTCATTTGAGGCACGAACTTAGACTTTACAAAATTTGGT-AGCAAAAAAGCCTTT
66 CCAAGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAATTTGGTGAGGAAAAAAGCCTTT
* * *
2249741 CTTGCGAAACGAAAGCATCAAGATGATGTATGCTAAAGAGAAGACTATGTTTATGATGCCTTATC
131 CTTGCGAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTTATC
* * * *
2249806 CTGAATAGAATGGGGATTAGTAGGAGTATTCATGTTTATCTTATTTAAGAGACAAACTTTGATTT
196 CTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
* * * * *
2249871 TATCAAAAATGGTGGAAGGAAATGTTTTTCTTGCGACCCCAAAGCATTAATTTCATGTATCCTAA
261 TATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAA
* * * * * *
2249936 TG-AAGGAACTGTGTTTTGGC-TCCCAATCTCGTAAAGAATG-GAGATTGTTATGAGCATTGATG
326 TGAAAGGAA-TGTGTTTTGGCTTCCCAATCTTGAAAAGAATGAGACATT-TT-CGAGAATCGATG
*
2249998 CTTGTCTTATTTAAGGGATGAACTTTGATTTT-AAGGAAAATAGGGCAAAGAAAAGATTTCTATG
388 CTTGTCTTATTTAAGGGATGAA-TTTG-TTTTAAAGGAAAATA-GGCAAAGAAAAGATTTCCATG
*
2250062 CAAAAGAAAGTCATCAATATCATTT
450 CAAAAGAAAATCATCAATATCATTT
* * *
2250087 ATACTAATGAGGAGATTGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTATTACTAGAAT
1 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* * * * * ** *
2250152 CCATGTTTGTCTCT-TTTGAAGAACGAACTTAAAATTTACAAAAAATGGTG-GGAAAAAAGCTTT
66 CCAAGTTTGTCT-TATTTGAGGCACGAACTTAGACTTTACAAAATTTGGTGAGGAAAAAAGCCTT
* * * * * * ** *
2250215 TCTTGCGAAAAGAAAGCATCAGTATGATGCATCCTAATGAGAAGATTGTGTTTATATTACCTTAT
130 TCTTGCGAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTTAT
* * * *
2250280 CCTGAAATGAATGGGGATTAGTATAAGTATTAATATTTGTCTTATTTAAGAGACAAACTTTGATT
195 CCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
* * * * *
2250345 CTATCAAAAATGGAGGAAGGAAAAGTTTTTCTTACGACATCAAAGCGTCAATGTCATGTATCCTA
260 CTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTA
* * * * * *
2250410 ATGAAAGGAATGTGTTTTGGCTTCACAATCTTGAAAAGAACTGAGATAGTTGCGAGAATCAATTC
325 ATGAAAGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAA-TGAGACATTTTCGAGAATCGATGC
* * * * * * *
2250475 TTATCTTATTTAAGGTATGAACATTGCTTTAAAGGAAAATAGGCATAGAAAATATTCCCATGCAA
389 TTGTCTTATTTAAGGGATGAA-TTTGTTTTAAAGGAAAATAGGCAAAGAAAAGATTTCCATGCAA
2250540 AAGAAAATCATCAATATCATTT
453 AAGAAAATCATCAATATCATTT
* *
2250562 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATTAATGAAGATCATTACTAGAAT
1 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* ** **
2250627 CCAAGTTTGGCTCT-TTTGAGGTGCGAACTTAGACTTTACAAAACATGGT-AGGAAAAAAGCCTT
66 CCAAGTTTGTCT-TATTTGAGGCACGAACTTAGACTTTACAAAATTTGGTGAGGAAAAAAGCCTT
* * * *
2250690 TCCTGCGAAACGAGAGCATCAATATGATGTATCATAAAGAGAACACTATGTTTAT-GTGGCCTTA
130 TCTTGCGAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACTATGTTTATGGT-GCCTTA
*
2250754 TCCTGAAAAGAATGAGGATTAGTATGAGTATTCATGTTTGTCTCT-TTTAAGAGACAAACTTTGA
194 TCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCT-TATTTAAGAGACAAACTTTGA
2250818 TTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACA
258 TTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACA
2250859 TTGTTGCAAC
Statistics
Matches: 7010, Mismatches: 1069, Indels: 539
0.81 0.12 0.06
Matches are distributed among these distances:
450 1 0.00
451 3 0.00
452 204 0.03
453 133 0.02
454 24 0.00
455 11 0.00
456 78 0.01
457 19 0.00
458 31 0.00
459 65 0.01
460 42 0.01
461 110 0.02
462 12 0.00
463 22 0.00
464 4 0.00
465 1 0.00
466 3 0.00
467 3 0.00
468 211 0.03
469 42 0.01
470 286 0.04
471 666 0.10
472 258 0.04
473 834 0.12
474 813 0.12
475 1688 0.24
476 883 0.13
477 84 0.01
478 51 0.01
479 5 0.00
480 1 0.00
486 1 0.00
487 1 0.00
488 1 0.00
489 1 0.00
490 2 0.00
493 1 0.00
494 2 0.00
495 1 0.00
496 1 0.00
497 1 0.00
498 1 0.00
505 3 0.00
508 6 0.00
509 369 0.05
510 31 0.00
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (474 bp):
ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
CCAAGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAATTTGGTGAGGAAAAAAGCCTTT
CTTGCGAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTTATC
CTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
TATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAA
TGAAAGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGAGACATTTTCGAGAATCGATGCTT
GTCTTATTTAAGGGATGAATTTGTTTTAAAGGAAAATAGGCAAAGAAAAGATTTCCATGCAAAAG
AAAATCATCAATATCATTT
Found at i:2250354 original size:158 final size:159
Alignment explanation
Indices: 2249731--2250856 Score: 520
Period size: 158 Copynumber: 7.1 Consensus size: 159
2249721 TTGGTAGCAA
* * * * * * *
2249731 AAAAGCCTTTCTTGCGAAACGAAAGCATCAAGATGATGTATGCTAAAGAGAAGACTATGTTTATG
1 AAAAGCTTTTCTTGCGAAAAGAAAGCATCAATATCATGTATCCTAATGAGAAGACTGTGTTTATG
* * * *
2249796 ATGCCTTATCCTG-AATAGAATGGGGATTAGTAGGAGTATTCATGTTTATCTTATTTAAGAGACA
66 ATGCCTAATCCTGAAAT-GAATGGAGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACA
2249860 AACTTTGATTTTATCAAAAATGGT-GGAAGG
130 AACTTTGATTTTATCAAAAATGGTGGGAA-G
* * **** * * *
2249890 AAATGTTTTTCTTGCGACCCCAAAGCATTAATTTCATGTATCCTAATGA-AGGAACTGTGTTT-T
1 AAAAGCTTTTCTTGCGAAAAGAAAGCATCAATATCATGTATCCTAATGAGAAG-ACTGTGTTTAT
* * * * * *
2249953 GGCT-CCCAAT-CTCGTAAA-GAATGGAGATT-GTTATGAGCATTGATGCTTGTCTTATTTAAGG
65 -GATGCCTAATCCT-G-AAATGAATGGAGATTAG-TATGAGTATTCATGTTTGTCTTATTTAAGA
** *** **
2250014 GATGAACTTTGATTTTAAGGAAAATAGG-GCAAAG
126 GACAAACTTTGATTTTATCAAAAAT-GGTGGGAAG
* * * * *
2250048 AAAAG-ATTTCTATGC-AAAAGAAAGTCATCAATATCATTTATACTAATGAGGAGATTGTGTTTA
1 AAAAGCTTTTCT-TGCGAAAAGAAAG-CATCAATATCATGTATCCTAATGAGAAGACTGTGTTTA
* * * * *
2250111 T-AGTGCCTAATCAC-AAAATGAATGAAGATTATTACT-AGAATCCATGTTTGTCTCT-TTTGAA
64 TGA-TGCCTAATC-CTGAAATGAATGGAGATTAGTA-TGAGTATTCATGTTTGTCT-TATTT-AA
* ** *
2250172 GA-ACGAACTTAAAATTTA-CAAAAAATGGTGGGAA-
124 GAGACAAACTTTGATTTTATC-AAAAATGGTGGGAAG
* * * *
2250206 AAAAGCTTTTCTTGCGAAAAGAAAGCATCAGTATGATGCATCCTAATGAGAAGATTGTGTTTAT-
1 AAAAGCTTTTCTTGCGAAAAGAAAGCATCAATATCATGTATCCTAATGAGAAGACTGTGTTTATG
* * * * * *
2250270 ATTACCTTATCCTGAAATGAATGGGGATTAGTATAAGTATTAATATTTGTCTTATTTAAGAGACA
66 A-TGCCTAATCCTGAAATGAATGGAGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACA
* *
2250335 AACTTTGATTCTATCAAAAATGG-AGGAAGG
130 AACTTTGATTTTATCAAAAATGGTGGGAA-G
* * * ** * * *
2250365 AAAAGTTTTTCTTACGACATCAAAGCGTCAATGTCATGTATCCTAATGA-AAGGAATGTGTTT-T
1 AAAAGCTTTTCTTGCGAAAAGAAAGCATCAATATCATGTATCCTAATGAGAA-GACTGTGTTTAT
* * * * * *
2250428 GGCTTCAC-AATCTTGAAAAGAACT-GAGA-TAGT-TGCGAG-AATCAAT-TCTTATCTTATTTA
65 -GATGC-CTAATCCTGAAATGAA-TGGAGATTAGTAT--GAGTATTC-ATGT-TTGTCTTATTTA
** * * * *** * *
2250487 AG-GTATGAACATTGCTTTAAAGGAAAAT--AGGCATAG
123 AGAG-ACAAACTTTGATTTTATCAAAAATGGTGGGA-AG
** ** * * * * *
2250523 AAAATATTCCCATGC-AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTAT
1 AAAAGCTTTTCTTGCGAAAAG-AAAGCATCAATATCATGTATCCTAATGAGAAGACTGTGTTTAT
* * * * * * * * *
2250587 -AGTGCCTAATCAC-GAAATTAATGAAGATCATTACT-AGAATCCAAGTTTGGCTCT-TTTGAG-
65 GA-TGCCTAATC-CTGAAATGAATGGAGATTAGTA-TGAGTATTCATGTTTGTCT-TATTTAAGA
* * * * *
2250647 GTGCGAACTTAGACTTTA-CAAAACATGGTAGGAA-
126 G-ACAAACTTTGATTTTATCAAAA-ATGGTGGGAAG
* * * * * * * * *
2250681 AAAAGCCTTTCCTGCGAAACGAGAGCATCAATATGATGTATCATAAAGAGAACACTATGTTTATG
1 AAAAGCTTTTCTTGCGAAAAGAAAGCATCAATATCATGTATCCTAATGAGAAGACTGTGTTTATG
* *
2250746 -TGGCCTTATCCTGAAAAGAAT-GAGGATTAGTATGAGTATTCATGTTTGTCTCT-TTTAAGAGA
66 AT-GCCTAATCCTGAAATGAATGGA-GATTAGTATGAGTATTCATGTTTGTCT-TATTTAAGAGA
* *
2250808 CAAACTTTGATTCTATCAAAAACGGT-GGAAGG
128 CAAACTTTGATTTTATCAAAAATGGTGGGAA-G
*
2250840 AAAAGTTTTTCTTGCGA
1 AAAAGCTTTTCTTGCGA
2250857 CATTGTTGCA
Statistics
Matches: 702, Mismatches: 195, Indels: 140
0.68 0.19 0.14
Matches are distributed among these distances:
157 40 0.06
158 398 0.57
159 251 0.36
160 11 0.02
161 2 0.00
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (159 bp):
AAAAGCTTTTCTTGCGAAAAGAAAGCATCAATATCATGTATCCTAATGAGAAGACTGTGTTTATG
ATGCCTAATCCTGAAATGAATGGAGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
ACTTTGATTTTATCAAAAATGGTGGGAAG
Found at i:2251997 original size:79 final size:79
Alignment explanation
Indices: 2251849--2252080 Score: 288
Period size: 79 Copynumber: 2.9 Consensus size: 79
2251839 ATCCCTTCGG
* * **
2251849 AAATAATAGGGTTGGAGTAT-CCCGATTGTGAAAAATTGGTGTTTTGGAAAAAAAATTAGGGTTG
1 AAATAATAGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTAGAAATAAAACCAGGGTTG
*
2251913 CAGTATCCCCTAAA
66 AAGTATCCCCTAAA
* * * * ** **
2251927 AAATAATAAGGTTAGAGTATCCCCGATTATGGAAAATCAGTGTTTTAGAAATAAAACCCCGGTTG
1 AAATAATAGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTAGAAATAAAACCAGGGTTG
* *
2251992 GAGTATCCCCTAGA
66 AAGTATCCCCTAAA
* *
2252006 AAATAACT-GGGTTGGAGTATCTCCGATGGTGAAAAATTGGTGTTTTAGAAATAAAACCAGGGTT
1 AAATAA-TAGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTAGAAATAAAACCAGGGTT
2252070 GAAGTATCCCC
65 GAAGTATCCCC
2252081 GATGGTGAAA
Statistics
Matches: 127, Mismatches: 25, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
78 18 0.14
79 108 0.85
80 1 0.01
ACGTcount: A:0.35, C:0.13, G:0.23, T:0.28
Consensus pattern (79 bp):
AAATAATAGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTAGAAATAAAACCAGGGTTG
AAGTATCCCCTAAA
Found at i:2252120 original size:51 final size:51
Alignment explanation
Indices: 2252014--2252112 Score: 153
Period size: 51 Copynumber: 1.9 Consensus size: 51
2252004 GAAAATAACT
* * * * *
2252014 GGGTTGGAGTATCTCCGATGGTGAAAAATTGGTGTTTTAGAAATAAAACCA
1 GGGTTGAAGTATCCCCGATGGTGAAAAAGTAGTATTTTAGAAATAAAACCA
2252065 GGGTTGAAGTATCCCCGATGGTGAAAAAGTAGTATTTTAGAAATAAAA
1 GGGTTGAAGTATCCCCGATGGTGAAAAAGTAGTATTTTAGAAATAAAA
2252113 TCGGGGTTAG
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 43 1.00
ACGTcount: A:0.36, C:0.09, G:0.26, T:0.28
Consensus pattern (51 bp):
GGGTTGAAGTATCCCCGATGGTGAAAAAGTAGTATTTTAGAAATAAAACCA
Found at i:2252131 original size:51 final size:50
Alignment explanation
Indices: 2252014--2252131 Score: 146
Period size: 51 Copynumber: 2.3 Consensus size: 50
2252004 GAAAATAACT
* * * *
2252014 GGGTTGGAGTATCTCCGATGGTGAAAAATTGGTGTTTTAGAAATAAAACCA
1 GGGTT-GAGTATCCCCGATGGTGAAAAAGTAGTATTTTAGAAATAAAACCA
* *
2252065 GGGTTGAAGTATCCCCGATGGTGAAAAAGTAGTATTTTAGAAATAAAATCG
1 GGGTTG-AGTATCCCCGATGGTGAAAAAGTAGTATTTTAGAAATAAAACCA
*
2252116 GGGTTAGAGTGTCCCC
1 GGGTT-GAGTATCCCC
2252132 TCGAAAATAA
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
50 1 0.02
51 56 0.97
52 1 0.02
ACGTcount: A:0.32, C:0.12, G:0.28, T:0.28
Consensus pattern (50 bp):
GGGTTGAGTATCCCCGATGGTGAAAAAGTAGTATTTTAGAAATAAAACCA
Found at i:2252192 original size:130 final size:130
Alignment explanation
Indices: 2251942--2252190 Score: 297
Period size: 130 Copynumber: 1.9 Consensus size: 130
2251932 ATAAGGTTAG
* * * *
2251942 AGTATCCCCGATTATGGAAAATCAGTGTTTTAGAAATAAAACCCCGGTTGGAGTATCCCCTAGAA
1 AGTATCCCCGATGATGAAAAATCAGTATTTTAGAAATAAAACCCCGGTTAGAGTATCCCCTAGAA
* * * *
2252007 AATAACTGGGTTGGAGTATCTCCGATGGTGAAAAATTGGTGTTTTAGAAATAAAACCAGGGTTGA
66 AATAACGGGGTTGGAGTATCTCCAATGGTGAAAAATTGATATTTTAGAAATAAAACCAGGGTTGA
* * ** * *
2252072 AGTATCCCCGATGGTGAAAAAGT-AGTATTTTAGAAATAAAATCGGGGTTAGAGTGTCCCCTCGA
1 AGTATCCCCGATGATGAAAAA-TCAGTATTTTAGAAATAAAACCCCGGTTAGAGTATCCCCTAGA
* * * *
2252136 AAATAACGGGGTTTGAGTGT-TCCCAATGGTGGAAAATT-ATATTTTGGAAATAAAA
65 AAATAACGGGGTTGGAGTATCT-CCAATGGTGAAAAATTGATATTTTAGAAATAAAA
2252191 ACATCGATAA
Statistics
Matches: 99, Mismatches: 18, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
129 15 0.15
130 83 0.84
131 1 0.01
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.28
Consensus pattern (130 bp):
AGTATCCCCGATGATGAAAAATCAGTATTTTAGAAATAAAACCCCGGTTAGAGTATCCCCTAGAA
AATAACGGGGTTGGAGTATCTCCAATGGTGAAAAATTGATATTTTAGAAATAAAACCAGGGTTGA
Found at i:2263575 original size:79 final size:78
Alignment explanation
Indices: 2263408--2263717 Score: 340
Period size: 79 Copynumber: 4.0 Consensus size: 78
2263398 ATAAAAAGAA
* * ** *
2263408 GGTTGGAGTATCCCCTTGAAAATAATAGGGTTGGAGTATCCT-GATTATGGAAAATTGGTATTTT
1 GGTTGGAGTATCCCCTCGAAAATAATAGGGTTGGAGTATCCTCAATGGTGGAAAATTAGTATTTT
*
2263472 GGAAATAAAATCGG
66 AGAAATAAAAT-GG
* * * *
2263486 GGTTAGAGTATCTCCTCGAAAATAATAGGGTTGGAGTATCCTCAATTGTGGAAAATTAGTGTTTT
1 GGTTGGAGTATCCCCTCGAAAATAATAGGGTTGGAGTATCCTCAATGGTGGAAAATTAGTATTTT
2263551 AGAAATAAAACTGG
66 AGAAATAAAA-TGG
* * * ** * * *
2263565 GGTTGGAGTATCCCTTTGGAAATAACGGGGTTGGAGTATCCCCAATGGTGAAAAATT-GCTGTTT
1 GGTTGGAGTATCCCCTCGAAAATAATAGGGTTGGAGTATCCTCAATGGTGGAAAATTAG-TATTT
2263629 TAGAAATAAAATTGG
65 TAGAAATAAAA-TGG
* * * *
2263644 GGTTGGAGTATCCCCTCAAAAATAATGGGGTTGGAGTGTTCC-CGATGGTGGAAAATTA-TATTT
1 GGTTGGAGTATCCCCTCGAAAATAATAGGGTTGGAGT-ATCCTCAATGGTGGAAAATTAGTATTT
*
2263707 TGGAAATAAAA
65 TAGAAATAAAA
2263718 ACATCGATAA
Statistics
Matches: 198, Mismatches: 29, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
78 54 0.27
79 140 0.71
80 4 0.02
ACGTcount: A:0.32, C:0.10, G:0.26, T:0.31
Consensus pattern (78 bp):
GGTTGGAGTATCCCCTCGAAAATAATAGGGTTGGAGTATCCTCAATGGTGGAAAATTAGTATTTT
AGAAATAAAATGG
Found at i:2263719 original size:158 final size:157
Alignment explanation
Indices: 2263408--2263717 Score: 390
Period size: 158 Copynumber: 2.0 Consensus size: 157
2263398 ATAAAAAGAA
* ** * * * *
2263408 GGTTGGAGTATCCCCTTGAAAATAATAGGGTTGGAGTATCCTGATTATGGAAAATTGGTATTTTG
1 GGTTGGAGTATCCCCTTGAAAATAACAGGGTTGGAGTATCCCAATGATGAAAAATTGCTATTTTA
* * *
2263473 GAAATAAAATCGGGGTTAGAGTATCTCCTCGAAAATAATAGGGTTGGAGTATCCTCAATTGTGGA
66 GAAATAAAATCGGGGTTAGAGTATCCCCTCAAAAATAATAGGGTTGGAGTATCCTCAATGGTGGA
*
2263538 AAATTAGTGTTTTAGAAATAAAACTGG
131 AAATTAGTATTTTAGAAATAAAACTGG
* * * * *
2263565 GGTTGGAGTATCCCTTTGGAAATAACGGGGTTGGAGTATCCCCAATGGTGAAAAATTGCTGTTTT
1 GGTTGGAGTATCCCCTTGAAAATAACAGGGTTGGAGTAT-CCCAATGATGAAAAATTGCTATTTT
* * * * *
2263630 AGAAATAAAATTGGGGTTGGAGTATCCCCTCAAAAATAATGGGGTTGGAGTGTTCC-CGATGGTG
65 AGAAATAAAATCGGGGTTAGAGTATCCCCTCAAAAATAATAGGGTTGGAGT-ATCCTCAATGGTG
*
2263694 GAAAATTA-TATTTTGGAAATAAAA
129 GAAAATTAGTATTTTAGAAATAAAA
2263718 ACATCGATAA
Statistics
Matches: 129, Mismatches: 22, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
157 49 0.38
158 77 0.60
159 3 0.02
ACGTcount: A:0.32, C:0.10, G:0.26, T:0.31
Consensus pattern (157 bp):
GGTTGGAGTATCCCCTTGAAAATAACAGGGTTGGAGTATCCCAATGATGAAAAATTGCTATTTTA
GAAATAAAATCGGGGTTAGAGTATCCCCTCAAAAATAATAGGGTTGGAGTATCCTCAATGGTGGA
AAATTAGTATTTTAGAAATAAAACTGG
Found at i:2268552 original size:473 final size:472
Alignment explanation
Indices: 2267109--2270307 Score: 3615
Period size: 473 Copynumber: 6.8 Consensus size: 472
2267099 TTGGCTTCCT
* * * *
2267109 AAAA-TGGTGGGAAAAAAGCTTTTCTTGCGAAACAAAAGTATGAATATGATGTATCCTAAACAGA
1 AAAATTGGTGGGAAAAAAGCTTTTCTTGCGAAACGAAAGCATCAATATGATGTATCCTAAAGAGA
* *
2267173 AGACTATGTTTATGGTGCATTATCCTGAAAAGAATGGGGATTAGTATGAGTATTAATGTTTGTCT
66 AGACTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCT
* * *
2267238 TATTTAAGAGACAAACTTTGATTCTATAAAAAAT-GATGGAACGAAAAGTTTTTCTTGTGACACC
131 TATTTAAGAGACAAACTTTGATTCTATCAAAAATAG-TGGAAAGAAAAGTTTTTCTTATGACACC
* * *
2267302 AAAGCATCAATTTCATGTATCCTAATGAAGGGATTGTGTTTTGGC-TCCCAATCTCGTAAAGAGT
195 AAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCT-GTAAAGAAT
* *
2267366 GGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA-AGGTAAAT
259 GGAGATTGTTACGAGAATCGATCCTTGTCTTATTTAAGGGATGAACTTTGA-TTTAGA-GAAAAT
* * * * * *
2267430 AGGGCGAAGAAAAGGTTTCCAAATATAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATG
322 AGGGCAAAGAAAAGATTTCCATACA-AAAAAATCATTAATATCATTTATCCTAAAGAGGAGAATG
* * * *
2267495 TGTTTATAGTGCCTAATCACAAAATAAATGAAGATCATTTCTAGAATCTATGTTTGTCTCATTTT
386 TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG
2267560 AGGCACGAACTTAGACTTTACA
451 AGGCACGAACTTAGACTTTACA
* * * ** *
2267582 AAATTTGGTGGG-AAAAAGAC-CTTCTTGTGAAA-GTAAAAAATCAATATGATGTATCGTAAAGA
1 AAAATTGGTGGGAAAAAAG-CTTTTCTTGCGAAACG-AAAGCATCAATATGATGTATCCTAAAGA
* * *
2267644 GAACACTATGTTTGTGGTGCCTTATCCCGAAAAGAATGGGGATTAGTAT-A--A---ATGTTTGT
64 GAAGACTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGT
*
2267703 CTTATTTAAGAGACAAACTTTGATTCTATCAGAAATAGTGGAAAGAAAA-TCTTTTCTTATGACA
129 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAATAGTGGAAAGAAAAGT-TTTTCTTATGACA
* * * * *
2267767 CCAAAGCGTCAATGTCATGTTTCCTAATG-AGAGAATGTGTTTTGGCTTCCCAAACTTTAAAAGA
193 CCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTGT-AAAGA
* * * *
2267831 TTGGAGACTATTACAAGAATCGATCCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGA-AAA
257 ATGGAGATTGTTACGAGAATCGATCCTTGTCTTATTTAAGGGATGAACTTTGA-TTTA-GAGAAA
* * *
2267895 AAAGGGCAAAGAAAGGATTTCCATGCAAAAAAATCATTAATATCATTTATCCTAAAGAGGAGAAT
320 ATAGGGCAAAGAAAAGATTTCCATACAAAAAAATCATTAATATCATTTATCCTAAAGAGGAGAAT
* * *
2267960 GTGTTTACAGTGCCTAATCGA-AAAATGAATGAAGATCATTACAAGAATCCATGTTTGACGT-AT
385 GTGTTTATAGTGCCTAATC-ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTC-TCAT
* *
2268023 TTAAGGCATGAACTTAGACTTTACA
448 TTGAGGCACGAACTTAGACTTTACA
** *
2268048 AAAATTGGTGAAAAAAAAGCCTTTCTTGCGAAACGAAAGCATCAATATGATGTATCCTAAAGAGA
1 AAAATTGGTGGGAAAAAAGCTTTTCTTGCGAAACGAAAGCATCAATATGATGTATCCTAAAGAGA
* * * * * * * *
2268113 AGACTATGTTTATGGGGCGTTATCATGAAAAGAATAGAGATTAGTACGAGTATTCTTGTTTATCT
66 AGACTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCT
* * * ** *
2268178 TATTTACGAGACAAACTTTGATTCTATCAAAAATGGTGGAAGGAAAAGTTTTTCTTGCGACCCCA
131 TATTTAAGAGACAAACTTTGATTCTATCAAAAATAGTGGAAAGAAAAGTTTTTCTTATGACACCA
* * * * * *
2268243 AAGCATCAATTTCGTGTATCCTAAAGAAAGGAATGCGTTTTAGC-TCCCAATCTCGTAAAGAATG
196 AAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCT-GTAAAGAATG
*
2268307 GAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGA-TTAGAGAAAATAGG
260 GAGATTGTTACGAGAATCGATCCTTGTCTTATTTAAGGGATGAACTTTGATTTAGAGAAAATAGG
* *
2268371 GC-AAGAAAAGATTTCCATACAAAAAAGTCATTATTATCATTTATCCTAAAGATGAGAGAATGTG
325 GCAAAGAAAAGATTTCCATACAAAAAAATCATTAATATCATTTATCCTAAAGA-G-GAGAATGTG
* * * * *
2268435 TTTATAGTGCCTAAAT-ACAAAATGAATGGAGATCATTACTACAATTCAAGTTTGTCTCATTCGA
388 TTTATAGTGCCT-AATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA
*
2268499 GGCACGAACTTAAACTTTACA
452 GGCACGAACTTAGACTTTACA
* *
2268520 AAAATTGGTGGGAAAAAAGCGTTTTTTTGCGAAACGAAAGCATCAATATGATATATCCTAAAGAG
1 AAAATTGGTGGGAAAAAAGC-TTTTCTTGCGAAACGAAAGCATCAATATGATGTATCCTAAAGAG
* * *
2268585 AAGTCTATGTTTATGGTGCCGTATCCTAAAAAGAATGGGGATTAGTATGAGTATTCACT-TTTGT
65 AAGACTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCA-TGTTTGT
** * * * * *
2268649 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTAGAAGGAAAAGTTTTTCTCACGACAT
129 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAATAGTGGAAAGAAAAGTTTTTCTTATGACAC
* * * * * * ** * *
2268714 CAAAGCTTCAATATCTTGTATTCTAATGAAGGGAATGTGTTTTTGCTTGACCTTTTTGAAAAGAA
194 CAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTT-CCCAATCTGTAAAGAA
* * ** * * *
2268779 CTAAGAGA--GTTACGAGAATTGATTTTTGTCTTATTTAAGGTG-TGAACATTGTTTTAAAGGAA
258 -T-GGAGATTGTTACGAGAATCGATCCTTGTCTTATTTAAGG-GATGAACTTTGATTTAGA-GAA
* * * * * * *
2268841 AAT-CGGTAAAGAAAAGTTTTCCGTGCAAAAGAAAATCATCAATTTCATTTATCCTAATA-AGGA
319 AATAGGGCAAAGAAAAGATTTCCATAC-AAA-AAAATCATTAATATCATTTATCCTAA-AGAGGA
* * *
2268904 GAATATGTTTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTATCTC
381 GAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTC
*
2268969 ATTTGAGGTACGAACTTAGACTTTACA
446 ATTTGAGGCACGAACTTAGACTTTACA
* * * * **
2268996 AAATTTGGTGGGAAAAAAAGATTCTT-ATG-AAAAC-AAAAAATCAATATGATGTATCGC-AAAG
1 AAAATTGGTGGG-AAAAAAGCTT-TTCTTGCGAAACGAAAGCATCAATATGATGTATC-CTAAAG
* * * *
2269057 AGAAGATTATGTTTGTGGTGCCTTATCCTAAAAAGAATGGGGATTAGTATGAGTATTTATGTTTG
63 AGAAGACTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTG
* * * * **
2269122 TCTTATTTATGATACAAACTTTGATTCTGTCAAAAACAGTGGAAAGAAAACCTTTTCTTATGACA
128 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATAGTGGAAAGAAAAGTTTTTCTTATGACA
* * *
2269187 CCAAAGCATCAATGTCATGTTTCCTAATG-AGGGAATGTGTTTTGGCTTCCCAAACTTTAAAAGA
193 CCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTGT-AAAGA
* * * * * *
2269251 TTGAAGACTATTATGAGAATCAATCCTTGTCTTATTTAAGGGATGAAC-TTGATTTTATGA-AAA
257 ATGGAGATTGTTACGAGAATCGATCCTTGTCTTATTTAAGGGATGAACTTTGA-TTTA-GAGAAA
* * * *
2269314 ATAGGGCAAAG-AAAGTATTTCCATGCAAAAGAAAAACATTAATATCATTTATCCTAATGAGGAA
320 ATAGGGCAAAGAAAAG-ATTTCCATAC-AAA-AAAATCATTAATATCATTTATCCTAAAGAGGAG
* * * * *
2269378 AATGTGTTTACAGTGCCTAATGAAAAAAATGAATGATGATCATTACAAGAATCCATGTTTGT-TG
382 AATGTGTTTATAGTGCCTAAT-CACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCT-
** * * *
2269442 TGTTTAAGGCATGAACTTAGACTTTGCA
445 CATTTGAGGCACGAACTTAGACTTTACA
* *
2269470 AAAAATGGTGGGAAAAAAGCTTTTGC-TGCAAAACGAAAGCATCAATATGATGTATCCTAAAGAG
1 AAAATTGGTGGGAAAAAAGCTTTT-CTTGCGAAACGAAAGCATCAATATGATGTATCCTAAAGAG
** * * * *
2269534 AAGACTATGTTTATGGTGTGTTATCTTGAAAAGAATGGGGATTAGTATGTGTATACATATTTGTC
65 AAGACTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTC
* *
2269599 TTATTTAAGAGTCAAACTTTGATTCCATCAAAAATAGTGGAAAGAAAA-TCTTTT-TTATGACAC
130 TTATTTAAGAGACAAACTTTGATTCTATCAAAAATAGTGGAAAGAAAAGT-TTTTCTTATGACAC
* * * * *
2269662 CAAAGCATCAATGTCATGTTTCCTAAT-AAGAGAATGTGTTTTGGCTTCCCAAACTTTAAAAGAT
194 CAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTGT-AAAGAA
* * *
2269726 TAGAGATTGTTACAAGAATTGATCCTTGTCTTATTTAAGGGATGAACTTTGATTTTACGA-AAAA
258 TGGAGATTGTTACGAGAATCGATCCTTGTCTTATTTAAGGGATGAACTTTGA-TTTA-GAGAAAA
* * * *
2269790 TAGGGCAAAGAAAAGATTTTCATGCAAAAAAAAAATCATTTATATTATTTATCCTAATA-AGGAG
321 TAGGGCAAAGAAAAGATTTCCAT---ACAAAAAAATCATTAATATCATTTATCCTAA-AGAGGAG
* *
2269854 AATGTGTTTATTGTGCCTAATCGA-AAAATGAATGAAGATCATTACTAGAGTCCATGTTTGTCGT
382 AATGTGTTTATAGTGCCTAATC-ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTC-T
*
2269918 -ATTTGAGGCATGAACTTAGACTTTACA
445 CATTTGAGGCACGAACTTAGACTTTACA
* * * *
2269945 AAAATTGGTGGGAATAAAGCTTTTCTTG-AAAACCAAAGTATCAATATCG-TG-ATCCTAATA-A
1 AAAATTGGTGGGAAAAAAGCTTTTCTTGCGAAACGAAAGCATCAATAT-GATGTATCCTAA-AGA
* * *
2270006 GAAAACTAGGTTTATGGTGCCTTATCCTGAAAAGAATGGAGATTAGTATGAGTATTCATGTTTGT
64 GAAGACTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGT
* * **
2270071 CTTATTTAAGAGACAAAATTTGATTCTATCAAAAACAGTGG-AAGAAAAAGTTTTTCTTGCGACA
129 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAATAGTGGAAAG-AAAAGTTTTTCTTATGACA
* * * *
2270135 CCAAAGTATCAATTTCATGTATCCTAATAAAGGGAATGTGTTTTGGC-TCCCAATCTCGCACAA-
193 CCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCT-GTA-AAG
* * * * *
2270198 AATTGAGATCGTTACGAGAATCGATGCTTGTCTTATTTATGAGATGAACTTTGATTTTA-AGGAA
256 AATGGAGATTGTTACGAGAATCGATCCTTGTCTTATTTAAGGGATGAACTTTGA-TTTAGA-GAA
** * *
2270262 AGGAGGGCAAAAAAAAGATTTCTATACAAAAAAAGTCATTAATATC
319 AATAGGGCAAAGAAAAGATTTCCATACAAAAAAA-TCATTAATATC
2270308 TTAAAGCTCA
Statistics
Matches: 2312, Mismatches: 328, Indels: 173
0.82 0.12 0.06
Matches are distributed among these distances:
466 139 0.06
467 261 0.11
468 3 0.00
469 1 0.00
470 50 0.02
471 26 0.01
472 126 0.05
473 669 0.29
474 545 0.24
475 280 0.12
476 171 0.07
477 17 0.01
478 23 0.01
479 1 0.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (472 bp):
AAAATTGGTGGGAAAAAAGCTTTTCTTGCGAAACGAAAGCATCAATATGATGTATCCTAAAGAGA
AGACTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCT
TATTTAAGAGACAAACTTTGATTCTATCAAAAATAGTGGAAAGAAAAGTTTTTCTTATGACACCA
AAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTGTAAAGAATGG
AGATTGTTACGAGAATCGATCCTTGTCTTATTTAAGGGATGAACTTTGATTTAGAGAAAATAGGG
CAAAGAAAAGATTTCCATACAAAAAAATCATTAATATCATTTATCCTAAAGAGGAGAATGTGTTT
ATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCA
CGAACTTAGACTTTACA
Found at i:2271185 original size:19 final size:20
Alignment explanation
Indices: 2271141--2271193 Score: 81
Period size: 19 Copynumber: 2.7 Consensus size: 20
2271131 CTACCAGTTT
**
2271141 CATGTATCGATACAATTGTG
1 CATGTATCGATACAATTGAA
2271161 CATGTATCGATACAA-TGAA
1 CATGTATCGATACAATTGAA
2271180 CATGTATCGATACA
1 CATGTATCGATACA
2271194 CTGTATCAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 16 0.52
20 15 0.48
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.30
Consensus pattern (20 bp):
CATGTATCGATACAATTGAA
Found at i:2273730 original size:13 final size:13
Alignment explanation
Indices: 2273707--2273746 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
2273697 ATAGTAACCC
2273707 ATGTATCGATACA
1 ATGTATCGATACA
* *
2273720 TTGTATTGATACA
1 ATGTATCGATACA
2273733 ATGTATCGATACA
1 ATGTATCGATACA
2273746 A
1 A
2273747 AGAATATTGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2273764 original size:33 final size:33
Alignment explanation
Indices: 2273719--2273798 Score: 106
Period size: 33 Copynumber: 2.4 Consensus size: 33
2273709 GTATCGATAC
* *
2273719 ATTGTATTGATACAATGTATCGATACAAAGAAT
1 ATTGTATCGATACAATGTATCAATACAAAGAAT
* *
2273752 ATTGTATCGATACAATTTATCAATAGAAAGAAT
1 ATTGTATCGATACAATGTATCAATACAAAGAAT
* *
2273785 ATTGCATCAATACA
1 ATTGTATCGATACA
2273799 TCTGAGTTTT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 41 1.00
ACGTcount: A:0.44, C:0.11, G:0.12, T:0.33
Consensus pattern (33 bp):
ATTGTATCGATACAATGTATCAATACAAAGAAT
Found at i:2278104 original size:20 final size:19
Alignment explanation
Indices: 2278058--2278106 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 19
2278048 ATGTATCGAT
* *
2278058 ACATTGTATTGATACATGT
1 ACATTGTATCGATACATGG
*
2278077 TCATTGTATCGATACATGG
1 ACATTGTATCGATACATGG
2278096 ACAATTGTATC
1 AC-ATTGTATC
2278107 AAAACATAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
19 17 0.68
20 8 0.32
ACGTcount: A:0.31, C:0.14, G:0.16, T:0.39
Consensus pattern (19 bp):
ACATTGTATCGATACATGG
Found at i:2280317 original size:19 final size:19
Alignment explanation
Indices: 2280293--2280357 Score: 70
Period size: 21 Copynumber: 3.6 Consensus size: 19
2280283 TAGCCAAACT
2280293 TGTATCGATACACAAAATA
1 TGTATCGATACACAAAATA
2280312 TGTATCGAT--AC---A-A
1 TGTATCGATACACAAAATA
2280325 TGTATCGATACACAAAAAATA
1 TGTATCGATACAC--AAAATA
2280346 TGTATCGATACA
1 TGTATCGATACA
2280358 TTGGCTTGTA
Statistics
Matches: 38, Mismatches: 0, Indels: 14
0.73 0.00 0.27
Matches are distributed among these distances:
13 10 0.26
14 1 0.03
15 2 0.05
17 2 0.05
19 9 0.24
20 1 0.03
21 13 0.34
ACGTcount: A:0.45, C:0.15, G:0.12, T:0.28
Consensus pattern (19 bp):
TGTATCGATACACAAAATA
Found at i:2280329 original size:13 final size:13
Alignment explanation
Indices: 2280311--2280336 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2280301 TACACAAAAT
2280311 ATGTATCGATACA
1 ATGTATCGATACA
2280324 ATGTATCGATACA
1 ATGTATCGATACA
2280337 CAAAAAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2280334 original size:32 final size:33
Alignment explanation
Indices: 2280293--2280357 Score: 114
Period size: 34 Copynumber: 2.0 Consensus size: 33
2280283 TAGCCAAACT
2280293 TGTATCGATACAC-AAAATATGTATCGATACAA
1 TGTATCGATACACAAAAATATGTATCGATACAA
2280325 TGTATCGATACACAAAAAATATGTATCGATACA
1 TGTATCGATACAC-AAAAATATGTATCGATACA
2280358 TTGGCTTGTA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
32 13 0.42
34 18 0.58
ACGTcount: A:0.45, C:0.15, G:0.12, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAATATGTATCGATACAA
Found at i:2282393 original size:21 final size:21
Alignment explanation
Indices: 2282355--2282399 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
2282345 TTGCAAGTTG
* *
2282355 AAATAATGAATTTGGCTAATGA
1 AAATAATGAAGTTAGCTAA-GA
2282377 AAATAATG-AGTTAGCTAAGA
1 AAATAATGAAGTTAGCTAAGA
2282397 AAA
1 AAA
2282400 ATAAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.51, C:0.04, G:0.18, T:0.27
Consensus pattern (21 bp):
AAATAATGAAGTTAGCTAAGA
Found at i:2286311 original size:13 final size:13
Alignment explanation
Indices: 2286293--2286317 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2286283 CATTTTTCTT
2286293 TGTATCGATACAA
1 TGTATCGATACAA
2286306 TGTATCGATACA
1 TGTATCGATACA
2286318 GGGTGATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2286472 original size:20 final size:20
Alignment explanation
Indices: 2286429--2286474 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
2286419 AAATCTTTTG
2286429 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
2286450 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
2286470 CAAAA
1 CAAAA
2286475 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:2291116 original size:473 final size:473
Alignment explanation
Indices: 2289310--2292384 Score: 3420
Period size: 473 Copynumber: 6.6 Consensus size: 473
2289300 AGATCCTAAC
* * * * *
2289310 AATATCATTTATCCTAAAGAAGAGAAAGTGTTGATAGTGCCTAATTACAAAATGAATGAAGATCA
1 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
* * *
2289375 TTACTAGAATCCAAGTTTGTCTCATTCGAGGCATGAACTTAGACTTTACAAAAATTGGT-GGAAA
66 TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAA
* * *
2289439 AAAAGCGTTTCTTGAGAAACG-AAAGCATCAATATGATGTATCCTAAAGAGAAGTCTATGTTTAT
131 AAGA-C-TTTCTTGCGAAA-GTAAAGCATCAATATGATGTATCCTAAAGAGAAGACTATGTTTAT
* * * * * *
2289503 GATGTCTTATCC-AAAAATGAATGGAGATTAGTATGAGTATTCACGTTTATCTTATTTAAGAGAC
193 GGTGCCTTATCCTGAAAA-GAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAC
* * * * * *
2289567 AAACTTTGATTCTATCAAAAACGGTGGGAGGAAAAGTTTTTCTCGCGACATCAAAGCTTCAATGT
257 AAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGTTTTTCTTGCGACACCAAAGCATCAATGT
* * * * ** * *
2289632 CTTGTATCCTAACGAAGGGAATGTGTTTTTGCTTGACAATCTTGAAAAGAACT-AAGAC-AGTTA
322 CATGTATCCTAATGAAGAGAATGTGTTTTGGC-TCCCAATCTTTAAAAGAA-TGGAGACTA-TTA
* * * *
2289695 CGAGAATTGATTCTTGTCTTATTTAAG-GTATGAACATTG-TTTTAAAGGAAAATA-GGCAAAAA
384 CGAGAATCGATGCTTGTCTTATTTAAGAG-ATGAACTTTGATTTT-AAGGAAAATAGGGCAAAGA
* *
2289757 AAAGATTCT-CATGCAAAAAAAAATCATC
447 AAAGATT-TACATAC-AAAAAAAATCATT
* * *
2289785 AATATCATTTATCCTAATGAGGAGAATATATTTATAGTGCCTAATCACAAAATGAATAAAGATCA
1 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
** *
2289850 TTACTAGAATCCATGCATGTCTCATTTGAGGCATGAACTTAGACTTTAC-AAAATTGGTGGGAAA
66 TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAA
* ** *
2289914 AAGACTTTCTTGCGAAAGCAAAAAATCAATATGATGTATCGTAAAGAGAAGACTATGTTTATGGT
131 AAGACTTTCTTGCGAAAGTAAAGCATCAATATGATGTATCCTAAAGAGAAGACTATGTTTATGGT
* * * * *
2289979 GCCTTATCCTGAAAAGAAT-GGGATTAGTATAAGTATTTATATTTGTCTTATTTATGAGATAAAC
196 GCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAAC
* ** * *
2290043 TTTGATTCTATCAAAAACAGTGGAAAGAAAA-TCTTTTTTTATGAGACTAAAGCATCAATGTCAT
261 TTTGATTCTATCAAAAACAGTGGAAAGAAAAGT-TTTTCTTGCGACACCAAAGCATCAATGTCAT
* * * * *
2290107 GTTTCCAAATG-AGAGAATGTGTTTTGGCTTCCCAAACTTTAAAAGATTAGAGACTATTACGAGA
325 GTATCCTAATGAAGAGAATGTGTTTTGGC-TCCCAATCTTTAAAAGAATGGAGACTATTACGAGA
* * * *
2290171 ATCGATTCTTGTCTTATTTGAGAGATGAACTTTGATTTTACA-AAAAATAGGGCAGAGAAAAGAT
389 ATCGATGCTTGTCTTATTTAAGAGATGAACTTTGATTTTA-AGGAAAATAGGGCAAAGAAAAGAT
* *
2290235 TTCCATGCAAAAAAAATCATT
453 TTACATACAAAAAAAATCATT
* * ** *
2290256 AATATCATTTATCCTAATGAGGAGAATATGTTTATGGCACCTAATTGA-AAAATGAATGAAGATC
1 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA-TCACAAAATGAATGAAGATC
* *
2290320 ATTACTAGAATCCATGTTTGTCGT-ATTTGAGGCACGAACTCAGACTTT----AAATTGGCGGGA
65 ATTACTAGAATCCATGTTTGTC-TCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGA
* * *
2290380 AAAAAACCTTTCTTGCGAAACG-AAAGCATCAATATGATGTATCCTAAAAAGAAGACTACGTTTA
129 AAAAGA-CTTTCTTGCGAAA-GTAAAGCATCAATATGATGTATCCTAAAGAGAAGACTATGTTTA
* * * * *
2290444 TGGTGCGTGATCCTGAAATGAATGGGGATTATTATGAGTATTCATGTTTGTCTTATTTACGAGAC
192 TGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAC
** * * *
2290509 AAACTTTGATTCTATCAAAAATGGAGGAAAGAAAAGTTTTTCTTGGGACACCAAAGCATCAATTT
257 AAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGTTTTTCTTGCGACACCAAAGCATCAATGT
* * * *
2290574 CATATATCCTAATGAAG-GAAATGTGTTTTGGCTCCCAATCTCGT-AAAGAATGGAGATTGTTAC
322 CATGTATCCTAATGAAGAG-AATGTGTTTTGGCTCCCAATCT-TTAAAAGAATGGAGACTATTAC
* *
2290637 GAGAATCGATGCTTGTCTTGTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
385 GAGAATCGATGCTTGTCTTATTTAAGAGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
* *
2290702 GATTTACAAACAAAAAAAATCATC
450 GATTTACATACAAAAAAAATCATT
* *
2290726 AATATCATTTATCCTAATGAGAAGAATGTCTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
1 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
* * * * * *
2290791 TTACTAGAATCTATGTTTATCTCATTTTAGGCACAAACTTAGACTTTACAAAATTTGGTGGGACA
66 TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAA
* ** * * ** * *
2290856 AAGACTTTCTTGTGAAAGTAAAAAACCAATGTGATGTATTGTAAAAAGAACACTATGTTTATGGT
131 AAGACTTTCTTGCGAAAGTAAAGCATCAATATGATGTATCCTAAAGAGAAGACTATGTTTATGGT
2290921 GCCTTAT-CTCGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAA
196 GCCTTATCCT-GAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAA
* * * * * **
2290985 CTTTGGTTCTATAAAAAATAGTGAAAAGAAAA-TCTTTTATTATGACACCAAAGCATCAATGTCA
260 CTTTGATTCTATCAAAAACAGTGGAAAGAAAAGT-TTTTCTTGCGACACCAAAGCATCAATGTCA
* * * *
2291049 TGTTTCCTATTGAA-AGAATGTGTTTTGGCTTCCCAAACTTTAAAAGATTGGAGACTATTACGAG
324 TGTATCCTAATGAAGAGAATGTGTTTTGGC-TCCCAATCTTTAAAAGAATGGAGACTATTACGAG
* *
2291113 AATCGAT-CTTTGTCTTATTTAAGAGATGAACTTTGATTTTACGAAAAATAGGGCAAAGAAAAGA
388 AATCGATGC-TTGTCTTATTTAAGAGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGA
* **
2291177 TTTCCATGTAAAAAAAATCATT
452 TTTACATACAAAAAAAATCATT
*
2291199 AATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCGA-AAAATGAATGAAGATC
1 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC-ACAAAATGAATGAAGATC
* *
2291263 ATTACTAGAATCCATGTTTGTCGT-ATTTGAGGCACAAACTTAGACTTTACAAAAATTGGCGGGA
65 ATTACTAGAATCCATGTTTGTC-TCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGA
* * ** * * * *
2291327 AGAAAGCCTTTCTTGCAAAACCAAAGTATCAATATCG-TGTATCCTAATGAGAAAACTTTGTTTA
129 A-AAAGACTTTCTTGCGAAAGTAAAGCATCAATAT-GATGTATCCTAAAGAGAAGACTATGTTTA
* * * * * *
2291391 TGGTGCCTAATTCTGAAAAGAATGGGGATTAGCATGAGTATTCAGGTTTGTCTTATATAAAAGAC
192 TGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAC
* * * * * *
2291456 AAACTTTGATTATAGCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGTATCAATTT
257 AAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGTTTTTCTTGCGACACCAAAGCATCAATGT
* * * * * *
2291521 CATGTATACTAATGAAGGGAATGTTTTTTGGCTCCCAATCTCGTAAAA-AATGGAGATTGTTACG
322 CATGTATCCTAATGAAGAGAATGTGTTTTGGCTCCCAATCT-TTAAAAGAATGGAGACTATTACG
* * *
2291585 AGAATTC-ATGCTTGTCTTATTTATGAGATAAACTTTGATTTTAAAGAAAATAGGG-AAA-AAAA
386 AGAA-TCGATGCTTGTCTTATTTAAGAGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
* *
2291647 GATTTAGATAC-AAAAAACTCATT
450 GATTTACATACAAAAAAAATCATT
* * * *
2291670 AATATCATTT-TCGCTAAAGTGGATAATGTGTTTATAGTGCCTAATTACAAAATGAATGAAGATC
1 AATATCATTTATC-CTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATC
* * * * * *
2291734 AATACTAGAATCCAAGTTTGTCTCATTCGAGGCACGAACTCAGACTTCACAAAAATTGGTGGAAA
65 ATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG-GA
* * *
2291799 AAAAGCCTTTCTTGC-AAAATGAAAGCATCAATATGATGTATCCTAAAGAGAAGTCTATGTTTAT
129 AAAAGACTTTCTTGCGAAAGT-AAAGCATCAATATGATGTATCCTAAAGAGAAGACTATGTTTAT
*
2291863 GATGCCTTATCCTG--AA-AA----G---A--ATG-G--TT-A------TCTTATTTAAGAGACA
193 GGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACA
* *
2291906 AACTTTGATTCTATCAAAAACAGTGG-AAGCAAAAGTTTTTCTTGCGAGACCAAAGCATCAATTT
258 AACTTTGATTCTATCAAAAACAGTGGAAAG-AAAAGTTTTTCTTGCGACACCAAAGCATCAATGT
* * **
2291970 CATGTATCCTAAT-AAGAGGAATGTGTTTTGGCTCCCAATC-TCATAAAGAATGGAGATTGGTAC
322 CATGTATCCTAATGAAGA-GAATGTGTTTTGGCTCCCAATCTTTA-AAAGAATGGAGACTATTAC
* * *
2292033 GAGAATCGATGCTTGTCTTATTTATGAGATGAACTTTTATTTTAAGGAAAATAGGGCAAAGAGAA
385 GAGAATCGATGCTTGTCTTATTTAAGAGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
* *
2292098 GATTTTCATAAAAAAAAAACTCATT
450 GATTTACATACAAAAAAAA-TCATT
* * * * * * * *
2292123 AACAACATTTATCCCAAAGAGGAGAATATGTTTACAGTG-CTACAT-ATAGAATGAATGAAGATC
1 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA-ATCACAAAATGAATGAAGATC
* * * ** * *
2292186 ATTACTAGAATCCAGGTTTGTCTCATTCGAGACACGAGTTTATATTTTACAAAAATTGGTGGGAA
65 ATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGG-A
* * * *
2292251 AAAAGCCTTTCTTCCGAAA-TGAAAGCATCAATATGATGTATCCTAAAGAAAAGTCTATGTTTAT
129 AAAAGACTTTCTTGCGAAAGT-AAAGCATCAATATGATGTATCCTAAAGAGAAGACTATGTTTAT
* * * * *
2292315 GGTGCCTTATCCTGAAAAGAAT-GGGATTAGTAAGAGTATTAACGTTTGCCTTATTTAAGAGATA
193 GGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACA
2292379 AACTTT
258 AACTTT
2292385 AAAAAGAGAA
Statistics
Matches: 2215, Mismatches: 301, Indels: 170
0.82 0.11 0.06
Matches are distributed among these distances:
447 1 0.00
448 11 0.00
449 165 0.07
450 3 0.00
451 11 0.00
452 150 0.07
453 39 0.02
454 4 0.00
455 3 0.00
456 2 0.00
458 2 0.00
459 3 0.00
461 2 0.00
463 2 0.00
464 2 0.00
466 2 0.00
467 1 0.00
468 18 0.01
469 76 0.03
470 306 0.14
471 384 0.17
472 156 0.07
473 476 0.21
474 262 0.12
475 134 0.06
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (473 bp):
AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAA
AAGACTTTCTTGCGAAAGTAAAGCATCAATATGATGTATCCTAAAGAGAAGACTATGTTTATGGT
GCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAAC
TTTGATTCTATCAAAAACAGTGGAAAGAAAAGTTTTTCTTGCGACACCAAAGCATCAATGTCATG
TATCCTAATGAAGAGAATGTGTTTTGGCTCCCAATCTTTAAAAGAATGGAGACTATTACGAGAAT
CGATGCTTGTCTTATTTAAGAGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTA
CATACAAAAAAAATCATT
Found at i:2291267 original size:158 final size:156
Alignment explanation
Indices: 2290162--2291756 Score: 538
Period size: 158 Copynumber: 10.1 Consensus size: 156
2290152 ATTAGAGACT
* * *
2290162 ATTACGAGAATCGAT-TCTTGTCTTATTTGAGAGATGAACTTTGATTTTACAAAAAATAGGGCAG
1 ATTACGAGAATCGATGT-TTGTCTTATTTAAGAGACGAACTTTGATTTTAC-AAAAATAGGGCAA
* * * * * *
2290226 AGAAAAGATTTCCATGCAAAAAAAATCATTAATATCATTTATCCTAATGAGGAGAATATGTTTAT
64 AGAAAAGATTT-CATGTAAAAAAAAGCATCAATATCATTTATCCTAATAAGAAGAATGTGTTTAT
** * *
2290291 GGCACCTAATTGAAAAATGAATGAAGATC
128 GGTGCCTAATCGAAAAATGAATGGAGATC
* * * * ** * * * *
2290320 ATTACTAGAATCCATGTTTGTCGTATTTGAG-GCACGAACTCAGACTTT---AAATTGGCGGGAA
1 ATTACGAGAATCGATGTTTGTCTTATTTAAGAG-ACGAACTTTGATTTTACAAAAATAG-GGCAA
** * * ** * * * * **
2290381 A-AAAACCTTTCTTGCGAAACGAAAGCATCAATATGATGTATCCTAAAAAGAAGACTACGTTTAT
64 AGAAAAGATTTCATG-TAAAAAAAAGCATCAATATCATTTATCCTAATAAGAAGAATGTGTTTAT
* * *** * *
2290445 GGTGCGTGATCCTGAAATGAATGGGGATT
128 GGTGCCTAATCGAAAAATGAATGGAGATC
* * * * * *
2290474 ATTATGAGTATTC-ATGTTTGTCTTATTTACGAGACAAACTTTGATTCTATCAAAAAT-GGAGGA
1 ATTACGAG-AATCGATGTTTGTCTTATTTAAGAGACGAACTTTGATTTTA-CAAAAATAGG-GCA
* * * * ** * * *
2290537 AAGAAAAGTTTTTCTTGGGACACCAAAGCATCAATTTCATATATCCTAATGAAGGA-AATGTGTT
63 AAGAAAAG-ATTTCAT-GTAAAAAAAAGCATCAATATCATTTATCCTAAT-AAGAAGAATGTGTT
* * *
2290601 T-TGGCT-CCCAATCTCG-TAAA-GAATGGAGATT
125 TATGG-TGCCTAA--TCGAAAAATGAATGGAGATC
* * * * *
2290632 GTTACGAGAATCGATGCTTGTCTTGTTTAAGGGATGAACTTTGATTTTA-AGGAAAATAGGGCAA
1 ATTACGAGAATCGATGTTTGTCTTATTTAAGAGACGAACTTTGATTTTACA--AAAATAGGGCAA
*** * * *
2290696 AGAAAAGATTTACAAACAAAAAAAATCATCAATATCATTTATCCTAATGAGAAGAATGTCTTTAT
64 AGAAAAGATTT-CATGTAAAAAAAAGCATCAATATCATTTATCCTAATAAGAAGAATGTGTTTAT
* *
2290761 AGTGCCTAATC-ACAAAATGAATGAAGATC
128 GGTGCCTAATCGA-AAAATGAATGGAGATC
* * * * * * * * * *
2290790 ATTACTAGAATCTATGTTTATCTCATTTTAG-GCACAAACTTAGACTTTACAAAATTTGGTG---
1 ATTACGAGAATCGATGTTTGTCTTATTTAAGAG-ACGAACTTTGATTTTACAAAAATAGG-GCAA
* * * * * * ** * * * *
2290851 GGACAAAGACTTTCTTGTGAAAGTAAAAA--ACCAATGTGATGTATTGTAAAAAGAACACTATGT
64 AGA-AAAGA-TTTCATGT-AAA--AAAAAGCATCAATATCATTTATCCTAATAAGAAGAATGTGT
* * *
2290914 TTATGGTGCCTTATCTCG-AAAA-GAATGGGGATT
124 TTATGGTGCC-TA-ATCGAAAAATGAATGGAGATC
* * * * * * *
2290947 AGTATGAGTATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGGTTCTATA-AAAAATAGTGAA
1 ATTACGAG-AATCGATGTTTGTCTTATTTAAGAGACGAACTTTGATT-T-TACAAAAATAGGGCA
** * ** * * *
2291010 AAGAAAATCTTTTAT-TATGACACCAAAGCATCAATGTCATGTT-TCCTATTGA-AAGAATGTGT
63 AAGAAAAGATTTCATGTA--A-AAAAAAGCATCAATATCAT-TTATCCTAATAAGAAGAATGTGT
* * * ** *
2291072 TT-TGGCTTCCCAAACTTTAAAA-GATTGGAGA-C
124 TTATGG-TGCCTAATC-GAAAAATGAATGGAGATC
* *
2291104 TATTACGAGAATCGATCTTTGTCTTATTTAAGAGATGAACTTTGATTTTACGAAAAATAGGGCAA
1 -ATTACGAGAATCGATGTTTGTCTTATTTAAGAGACGAACTTTGATTTTAC-AAAAATAGGGCAA
* * *
2291169 AGAAAAGATTTCCATGTAAAAAAAATCATTAATATCATTTATCCTAATAAGGAGAATGTGTTTAT
64 AGAAAAGATTT-CATGTAAAAAAAAGCATCAATATCATTTATCCTAATAAGAAGAATGTGTTTAT
* *
2291234 AGTGCCTAATCGAAAAATGAATGAAGATC
128 GGTGCCTAATCGAAAAATGAATGGAGATC
* * * * * * * * **
2291263 ATTACTAGAATCCATGTTTGTCGTATTTGAG-GCACAAACTTAGACTTTACAAAAATTGGCGGGA
1 ATTACGAGAATCGATGTTTGTCTTATTTAAGAG-ACGAACTTTGATTTTACAAAAATAGG-GCAA
* * * * * * * * *
2291327 AG-AAAGCCTTTCTTGCAAAACCAAAGTATCAATATCGTGTATCCTAATGAGAA-AACTTTGTTT
64 AGAAAAG-ATTTCATGTAAAA-AAAAGCATCAATATCATTTATCCTAATAAGAAGAA-TGTGTTT
* *
2291390 ATGGTGCCTAATTCTG-AAAA-GAATGGGGATT
126 ATGGTGCCTAA-TC-GAAAAATGAATGGAGATC
** * * * * * * * * *
2291421 AGCATGAGTATTC-AGGTTTGTCTTATATAAAAGACAAACTTTGATTATAGCAAAAA-CGGTGGA
1 ATTACGAG-AATCGATGTTTGTCTTATTTAAGAGACGAACTTTGATTTTA-CAAAAATAGG-GCA
* * * * ** * * * * *
2291484 AAGAAAAGCTTTTCTTGCGACACCAAAGTATCAATTTCATGTATACTAATGAAG-GGAATGT-TT
63 AAGAAAAG-ATTTCATG-TAAAAAAAAGCATCAATATCATTTATCCTAAT-AAGAAGAATGTGTT
* * * *
2291547 TTTGGCT-CCCAATCTCGTAAAA--AATGGAGATT
125 TATGG-TGCCTAA--TCGAAAAATGAATGGAGATC
* * * ** *
2291579 GTTACGAGAATTC-ATGCTTGTCTTATTTATGAGATAAACTTTGATTTTAAAGAAAATAGGG-AA
1 ATTACGAGAA-TCGATGTTTGTCTTATTTAAGAGACGAACTTTGATTTTACA-AAAATAGGGCAA
** * * * *
2291642 A-AAAAGATTT-A-GATACAAAAAACTCATTAATATCATTT-TCGCTAA-AGTGGATAATGTGTT
64 AGAAAAGATTTCATG-TA-AAAAAAAGCATCAATATCATTTATC-CTAATA-AGAAGAATGTGTT
* * *
2291702 TATAGTGCCTAAT-TACAAAATGAATGAAGATC
125 TATGGTGCCTAATCGA-AAAATGAATGGAGATC
* * * *
2291734 AATACTAGAATCCAAGTTTGTCT
1 ATTACGAGAATCGATGTTTGTCT
2291757 CATTCGAGGC
Statistics
Matches: 1039, Mismatches: 301, Indels: 197
0.68 0.20 0.13
Matches are distributed among these distances:
152 1 0.00
153 12 0.01
154 123 0.12
155 45 0.04
156 24 0.02
157 197 0.19
158 478 0.46
159 140 0.13
160 19 0.02
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (156 bp):
ATTACGAGAATCGATGTTTGTCTTATTTAAGAGACGAACTTTGATTTTACAAAAATAGGGCAAAG
AAAAGATTTCATGTAAAAAAAAGCATCAATATCATTTATCCTAATAAGAAGAATGTGTTTATGGT
GCCTAATCGAAAAATGAATGGAGATC
Found at i:2293313 original size:474 final size:472
Alignment explanation
Indices: 2292387--2294852 Score: 2836
Period size: 474 Copynumber: 5.2 Consensus size: 472
2292377 TAAACTTTAA
* * * *
2292387 AAAGAGAAGTCTATGTTTATGGTGCCTTATCATAAAAAGAATGGGGATTAGTATGAGTATTCACG
1 AAAGAGAAGACTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATG
* * * *
2292452 TTTATCTTATCTAAGAGACAAACTATGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGC
66 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAGGAAAAGTTTTTCTTGC
* * *
2292517 AACATCAAAGCTTCAATGTCATGTATCCTAGA-GAAGGGAATGCGTTTTTGCTTCACATTCTTGA
131 GACATCAAAGCTTCAATGTCGTGTATCCTA-ATGAAGGGAATGTGTTTTTGCTTCACATTCTTGA
* * * *
2292581 AAAGAACTAAGACAGTTACGAGAATCGATTCTCGTTTTATATATGGTATGAACATTATTTTAAAG
195 AAAGAACTAAGATAGTTACGAGAATCGATTCTTGTCTTATTTAT-GTATGAACATTATTTTAAAG
* *
2292646 GAAAATAGGCAAAGAAAAGATTCCCATGCAAAAGAAAATCATCCATATCATTTATCCTAATGAGG
259 GAAAATAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCTATATCATTTAT-CTAATGAGG
*
2292711 AGATTATGTTTATAGTTCCTAATCACAAAATGAATGAAGATCATTACTAGAATTCAAGTTTGTCT
323 AGATTATGTTTATAGTTCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCT
* *
2292776 CATCCAAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCTTTTCTTGCGAAACGAA
388 CATTCGAGGCACGAACTTAGACTTTAC-AAAATTGGTGGGAAAAAAGCTTTTCTTGCGAAACGAA
*
2292841 AGCATCAATATGATGTATCAT
452 AGCATCAATATGATGTATCCT
* * * * *
2292862 ACAGAGAAGACTACGTTTATGTTGCCTTATCTTGAAAAGAATAGGGATTAGTAT-ACGTATTCAT
1 AAAGAGAAGACTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGA-GTATTCAT
* * * * **
2292926 GCTTGTCTTATTTAAGAGACAAACTTTGATTCCACCCAAAATGGTGGAAGGAAAAGTTTTTCTTG
65 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAGGAAAAGTTTTTCTTG
* * *
2292991 CGGCATCAAAGCTTCAATGTCGTGTATCCTAATGAAGGGAATATATTTTTGCTTCACATTCTTGA
130 CGACATCAAAGCTTCAATGTCGTGTATCCTAATGAAGGGAATGTGTTTTTGCTTCACATTCTTGA
2293056 AAAGAACTAAGATAGTTACGAGAATCGATTCTTGTCTTATTTATGTATGAACATTATTTTAAAGG
195 AAAGAACTAAGATAGTTACGAGAATCGATTCTTGTCTTATTTATGTATGAACATTATTTTAAAGG
* *
2293121 AAAATAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCTATATCATTTATCTTGATAAGGA
260 AAAATAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCTATATCATTTATC-TAATGAGGA
* * * * * * *
2293186 GATTATGTTTATAGTTCTTAATCACAAAATGATTGAAGATCATTATTAAAATCCATGTTTATCGC
324 GATTATGTTTATAGTTCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTC
* * *
2293251 ATTTGAGGCACGAACTTAGACTTTACAAAATCTGGTGGGAAAAAAGCCTTTCTTGTGAAACGAAA
389 ATTCGAGGCACGAACTTAGACTTTACAAAAT-TGGTGGGAAAAAAGCTTTTCTTGCGAAACGAAA
* *
2293316 GCATTAATATGATGTATGCT
453 GCATCAATATGATGTATCCT
* * ** *
2293336 AAAGAGAAAACTATGTTTTTGGAACCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATA
1 AAAGAGAAGACTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATG
* * * * ** *
2293401 TTTGTCTTACTTAAGAGACAAACTTTAATTCTATCAAAAAAAGTGAAAAGGAAATCTTTTTCTTA
66 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTG-GAAGGAAAAGTTTTTCTTG
* * * * * * * * ** *
2293466 TGACACCAAAGCATCAATGTCATGTTTCCTAATGAA-GGAATGTCTTTTGGCTTCCCAAACTTTA
130 CGACATCAAAGCTTCAATGTCGTGTATCCTAATGAAGGGAATGTGTTTTTGCTTCACATTCTTGA
* * * * * *
2293530 AAAG-ATTGAAGACT-TTTATGAGAATCGA-TCTTTGTCTTATTTAAGGGATGAACTTTGATTTT
195 AAAGAACT-AAGA-TAGTTACGAGAATCGATTC-TTGTCTTATTT-ATGTATGAACATT-ATTTT
* * * * * * ** *
2293592 -ACGAAAAATAGGGCAAAGAAAGGTTTTCCACGCAAAAAAAAAAAATCTTTAACATCATTTATAC
255 AAAGGAAAATA-GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATC--T-ATATCATTTAT-C
* * ** *
2293656 TAATGAGGAGAGTGTGTTTACGGTAT-CTGAA-CGA-AAAATGAATGAAGATCATTACAAGAATC
315 TAATGAGGAGATTATGTTTATAGT-TCCT-AATC-ACAAAATGAATGAAGATCATTACTAGAATC
* ** * * *
2293718 CATGTTTGTCGT-ATTTAAGGCACAAACTTAGACTTTACAAAAAATGGTGGGAAAAACGCTTTTC
377 CAAGTTTGTC-TCATTCGAGGCACGAACTTAGACTTTAC-AAAATTGGTGGGAAAAAAGCTTTTC
* * * * *
2293782 TTGTGAAACAAAAGCATTAAAATGATGTATCCC
440 TTGCGAAACGAAAGCATCAATATGATGTATCCT
* * * *
2293815 AAAGAGATGACTATGTTTATGTTGCCTTATCCTGAAAAAAATGGGGATTAGTATAAGTATTCATG
1 AAAGAGAAGACTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATG
* * * * * *
2293880 TTTGTCTTATTTAGGTGACAAACTTTGATTCCATCAAAAACTGTGGAAGGAAAAGTTTTTCATAC
66 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAGGAAAAGTTTTTCTTGC
* *
2293945 GACATCAAAGCTTCAATGTCAG-GTATCCTAATGAAGGAAATGTGTTTTTTCTTCACATTCTTGA
131 GACATCAAAGCTTCAATGTC-GTGTATCCTAATGAAGGGAATGTGTTTTTGCTTCACATTCTTGA
* * ** * * *
2294009 AAAAAACAAAGGCAATTACGAGAATCGATTCATGTCTTATTTATGGTATGAACATTATTTTAATG
195 AAAGAACTAAGATAGTTACGAGAATCGATTCTTGTCTTATTTAT-GTATGAACATTATTTTAAAG
* * * *
2294074 GAAAATAGGCAAAGAAAAGATTCCCATGCAAAAGAAAATCATCAATATCAGTTATCCAAATGAGG
259 GAAAATAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCTATATCATTTAT-CTAATGAGG
*
2294139 AGATTATGTTTATAGTTCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCAAGTTTGTCT
323 AGATTATGTTTATAGTTCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCT
* *
2294204 CATTCGAGGCACGAGCTTAGACTTTACAAAATTTGGTGGG-AAAAAGCCTTTCTTGCGAAACGAA
388 CATTCGAGGCACGAACTTAGACTTTACAAAA-TTGGTGGGAAAAAAGCTTTTCTTGCGAAACGAA
* *
2294268 TGCATCAATACGATGTATCCT
452 AGCATCAATATGATGTATCCT
* * *
2294289 AAATAGAAGTCTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTGTGAGTATTCATG
1 AAAGAGAAGACTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATG
* *
2294354 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAATGGAAGCAAAAGTTTTTCTTGC
66 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAGGAAAAGTTTTTCTTGC
* * * * * * * * *
2294419 AACACCAAAGCATCACTGTCGTGTATCCTAATGAAAGGAATGTGTTTTGGC-TCCCAATC-TCAT
131 GACATCAAAGCTTCAATGTCGTGTATCCTAATGAAGGGAATGTGTTTTTGCTTCACATTCTTGA-
* * * * * *
2294482 AAAGAA-TGGAGATTGGTACGAGAATCGATGCTTGTCTTATTTATGAGATGAACTTTGATTTT-A
195 AAAGAACT-AAGATAGTTACGAGAATCGATTCTTGTCTTATTTATG-TATGAACATT-ATTTTAA
* * * * * *
2294545 GGGAAAATAGGGCAAAGAGAAGATTTTCAT--AAAAAAAAAGTCAT-TAATAGCATTTATCCCAA
257 AGGAAAATA-GGCAAAGAAAAGATTTCCATGCAAAAGAAAA-TCATCT-ATATCATTTAT-CTAA
* * * * * *
2294607 AGAGGAGAATATGTTTATAG-TGCTACAT-ACAGAATGAATGAAGATCATTACTAGAATTCAGGT
318 TGAGGAGATTATGTTTATAGTTCCTA-ATCACAAAATGAATGAAGATCATTACTAGAATCCAAGT
* * * * **
2294670 TTGTCTCATTCGAGACACGAGCTTATATTTTACAAAAATTGGTGGGAAAAAAGCTTTTTCTACCG
382 TTGTCTCATTCGAGGCACGAACTTAGACTTTAC-AAAATTGGTGGGAAAAAAGC-TTTTCTTGCG
*
2294735 AAATGAAAGCATCAATATGATGTATCCT
445 AAACGAAAGCATCAATATGATGTATCCT
* * * * *
2294763 AAAGAGAAGTCTATGTTTATGGTGCCTTATCCTGAAAAGAGT-GGGATTAGTAAGAGTATTAACG
1 AAAGAGAAGACTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATG
* *
2294827 CTTGTCTTATTTAAGAGATAAACTTT
66 TTTGTCTTATTTAAGAGACAAACTTT
2294853 AAAAAGAGAA
Statistics
Matches: 1678, Mismatches: 268, Indels: 92
0.82 0.13 0.05
Matches are distributed among these distances:
472 84 0.05
473 157 0.09
474 647 0.39
475 369 0.22
476 35 0.02
478 81 0.05
479 293 0.17
480 12 0.01
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (472 bp):
AAAGAGAAGACTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATG
TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAGGAAAAGTTTTTCTTGC
GACATCAAAGCTTCAATGTCGTGTATCCTAATGAAGGGAATGTGTTTTTGCTTCACATTCTTGAA
AAGAACTAAGATAGTTACGAGAATCGATTCTTGTCTTATTTATGTATGAACATTATTTTAAAGGA
AAATAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCTATATCATTTATCTAATGAGGAGA
TTATGTTTATAGTTCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCAT
TCGAGGCACGAACTTAGACTTTACAAAATTGGTGGGAAAAAAGCTTTTCTTGCGAAACGAAAGCA
TCAATATGATGTATCCT
Found at i:2294883 original size:92 final size:93
Alignment explanation
Indices: 2294763--2294945 Score: 296
Period size: 93 Copynumber: 2.0 Consensus size: 93
2294753 GATGTATCCT
* *
2294763 AAAGAGAAGTCTATGTTTATGGTGCCTTATCCTGAAAAGAGT-GGGATTAGTAAGAGTATTAACG
1 AAAGAGAAGTCAATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTAAGAGTATTAACG
*
2294827 CTTGTCTTATTTAAGAGATAAACTTTAA
66 CTTGTCTTATTTAAGAGACAAACTTTAA
* * *
2294855 AAAGAGAAGTCAATGTTTATGGTTCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCACG
1 AAAGAGAAGTCAATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTAAGAGTATTAACG
*
2294920 TTTGTCTTATTTAAGAGACAAACTTT
66 CTTGTCTTATTTAAGAGACAAACTTT
2294946 GATTCTATCA
Statistics
Matches: 83, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
92 39 0.47
93 44 0.53
ACGTcount: A:0.34, C:0.10, G:0.21, T:0.34
Consensus pattern (93 bp):
AAAGAGAAGTCAATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTAAGAGTATTAACG
CTTGTCTTATTTAAGAGACAAACTTTAA
Found at i:2295368 original size:566 final size:567
Alignment explanation
Indices: 2294293--2295419 Score: 1509
Period size: 566 Copynumber: 2.0 Consensus size: 567
2294283 TATCCTAAAT
* * *
2294293 AGAAGTCTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTG
1 AGAAGTCAATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCACGTTTG
2294358 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAATGGAAGCAAAAGTTTTTCTTGCAACA
66 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAATGGAAGCAAAAGTTTTTCTTGCAACA
* * * *
2294423 CCAAAGCATCACTGTCGTGTATCCTAATGAAAGGAATGTGTTTTGGCTCCCAATCTCATAAAGAA
131 CCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGCGTTTTGGCTCACAATCTCATAAAGAA
* * * ** * *
2294488 TGGAGATTGGTACGAGAATCGATGCTTGTCTTATTTATGAGATGAACTTTGATTTTAGGGAAAAT
196 TGAAGATAGGTACGAGAATCGATGCTCGTCTTAGATATGAGATGAACATTGATTTTAAGGAAAAT
* ** *
2294553 AGGGCAAAGAGAAGATTTTCATAAAAAAAAAGTCATTAATAGCATTTATCCCAAAGAGGAGAATA
261 AGGGCAAAGAAAAGATTCCCATAAAAAAAAAGTCATCAATAGCATTTATCCCAAAGAGGAGAATA
* * * * *
2294618 TGTTTATAGTGCTACATACAGAATGAATGAAGATCATTACTAGAATTCAGGTTTGTCTCATTCGA
326 TGTTTATAGTCCTACATACAAAACGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTCGA
* * * * *
2294683 GACACGAGCTTATATTTTACAAAAATTGGTGGGAAAAAAGCTTTTTCTACCGAAATGAAAGCATC
391 GACACAAGCTTAGACTTTACAAAAATTGGTGGGAAAAAAGCTCTTTCTACCGAAACGAAAGCATC
* * *
2294748 AATATGATGTATCCTAAAGAGAAGTCTATGTTTATGGTGCCTTATCCTGAAAAGAGT-GGGATTA
456 AATACGATGTATCCTAAAGAGAAGTCTATGTTTATGGTGCCTTATCCAGAAAAGAATGGGGATTA
*
2294812 GTAAGAGTATTAACGCTTGTCTTATTTAAGAGATAAACTTTAAAAAG
521 GTAAGAGTATTAACGCTTGTCTTATTTAAGAGACAAACTTTAAAAAG
*
2294859 AGAAGTCAATGTTTATGGTTCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCACGTTTG
1 AGAAGTCAATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCACGTTTG
* * *
2294924 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAGGAAAAGTTTTTCTTGCGACA
66 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAATGGAAGCAAAAGTTTTTCTTGCAACA
* * * * * * * *
2294989 TCAAGGCTTCAATGTCATGTATCCTAGTGAAGGGAATGCGTTTTTGCTTCACATTCTTGA-AAAG
131 CCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGCGTTTTGGC-TCACAATC-TCATAAAG
* * *
2295053 AACT-AAGATAGTTACGAGAATCGATTCTCGTTTTAGATATG-GTATGAACATT-ATTTTAAAGG
194 AA-TGAAGATAGGTACGAGAATCGATGCTCGTCTTAGATATGAG-ATGAACATTGATTTT-AAGG
* * * *
2295115 AAAATA-GGCAAAGAAAAGATTCCCATGCAAAAGAAAA-TCATCCATATCATTTATCCTAAAGAG
256 AAAATAGGGCAAAGAAAAGATTCCCAT--AAAAAAAAAGTCATCAATAGCATTTATCCCAAAGAG
* * *
2295178 GAGATTATGTTTATAGTTCCTA-ATCCCAAAACGAATGAAGATCCTTACTAGAATCCAAGTTTGT
319 GAGAATATGTTTATAG-TCCTACAT-ACAAAACGAATGAAGATCATTACTAGAATCCAAGTTTGT
* * * **
2295242 CTTATTCGAGGCACAAGCTTAGGCTTTACAAAAATTGGTGGG-AAAAAGC-CTTTCTTGCGAAAC
382 CTCATTCGAGACACAAGCTTAGACTTTACAAAAATTGGTGGGAAAAAAGCTCTTTCTACCGAAAC
* * *
2295305 GAATGCATCAATACGATGTATCCTAAATAGAAGTCTATGTTTATGGTGCCTTATTCAGAAAAGAA
447 GAAAGCATCAATACGATGTATCCTAAAGAGAAGTCTATGTTTATGGTGCCTTATCCAGAAAAGAA
** * *
2295370 TGGGGATTAGTGTGAGTATTCACGTTTGTCTTATTTAAGAGACAAACTTT
512 TGGGGATTAGTAAGAGTATTAACGCTTGTCTTATTTAAGAGACAAACTTT
2295420 GATTCGATCA
Statistics
Matches: 485, Mismatches: 66, Indels: 19
0.85 0.12 0.03
Matches are distributed among these distances:
566 254 0.52
567 147 0.30
568 84 0.17
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.32
Consensus pattern (567 bp):
AGAAGTCAATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCACGTTTG
TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAATGGAAGCAAAAGTTTTTCTTGCAACA
CCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGCGTTTTGGCTCACAATCTCATAAAGAA
TGAAGATAGGTACGAGAATCGATGCTCGTCTTAGATATGAGATGAACATTGATTTTAAGGAAAAT
AGGGCAAAGAAAAGATTCCCATAAAAAAAAAGTCATCAATAGCATTTATCCCAAAGAGGAGAATA
TGTTTATAGTCCTACATACAAAACGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTCGA
GACACAAGCTTAGACTTTACAAAAATTGGTGGGAAAAAAGCTCTTTCTACCGAAACGAAAGCATC
AATACGATGTATCCTAAAGAGAAGTCTATGTTTATGGTGCCTTATCCAGAAAAGAATGGGGATTA
GTAAGAGTATTAACGCTTGTCTTATTTAAGAGACAAACTTTAAAAAG
Found at i:2295971 original size:93 final size:92
Alignment explanation
Indices: 2295802--2295984 Score: 276
Period size: 93 Copynumber: 2.0 Consensus size: 92
2295792 GATGTATCTT
* *
2295802 AAAGAGAAGTCTATGTTTATGGTGCCTTATCCTGAACAGAAAGGGATTAGTAAGAGTATTAACGT
1 AAAGAGAAGTCTATGTTTATGATGCCTTATCCTGAAAAGAAAGGGATTAGTAAGAGTATTAACGT
*
2295867 TTGTCTTATTTAAGAGATAAACTTTAA
66 TTGTCTTATTTAAGAGACAAACTTTAA
* ** * **
2295894 AAAGAGAAGTCTATGTTTGTGATGCCTTATCCTGAAAAGCATGGGGATTAGTATGAGTATTCTCG
1 AAAGAGAAGTCTATGTTTATGATGCCTTATCCTGAAAAG-AAAGGGATTAGTAAGAGTATTAACG
2295959 TTTGTCTTATTTAAGAGACAAACTTT
65 TTTGTCTTATTTAAGAGACAAACTTT
2295985 GATTTTATCA
Statistics
Matches: 81, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
92 36 0.44
93 45 0.56
ACGTcount: A:0.33, C:0.11, G:0.21, T:0.35
Consensus pattern (92 bp):
AAAGAGAAGTCTATGTTTATGATGCCTTATCCTGAAAAGAAAGGGATTAGTAAGAGTATTAACGT
TTGTCTTATTTAAGAGACAAACTTTAA
Found at i:2296943 original size:92 final size:93
Alignment explanation
Indices: 2296841--2297025 Score: 300
Period size: 93 Copynumber: 2.0 Consensus size: 93
2296831 GATGTATCCT
*
2296841 AAAGAGAAGTCTATGTTTATGGTGCCTTATCCTGAAAAAAAT-GGGATTAGTAAGAGTATTAACG
1 AAAGAGAAGTCTATGTTTATGATGCCTTATCCTGAAAAAAATGGGGATTAGTAAGAGTATTAACG
*
2296905 TTTGGCTCATTTAAGAGATAAACTTTGA
66 TTTGGCTCATTTAAGAGACAAACTTTGA
* * *
2296933 AAAGAGAAGTCTATGTTTATGATGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCACG
1 AAAGAGAAGTCTATGTTTATGATGCCTTATCCTGAAAAAAATGGGGATTAGTAAGAGTATTAACG
* *
2296998 TTTGTCTTATTTAAGAGACAAACTTTGA
66 TTTGGCTCATTTAAGAGACAAACTTTGA
2297026 TTCTATCAAA
Statistics
Matches: 85, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
92 40 0.47
93 45 0.53
ACGTcount: A:0.35, C:0.10, G:0.22, T:0.34
Consensus pattern (93 bp):
AAAGAGAAGTCTATGTTTATGATGCCTTATCCTGAAAAAAATGGGGATTAGTAAGAGTATTAACG
TTTGGCTCATTTAAGAGACAAACTTTGA
Found at i:2298062 original size:93 final size:92
Alignment explanation
Indices: 2297880--2298062 Score: 294
Period size: 93 Copynumber: 2.0 Consensus size: 92
2297870 GATGTATCCT
* *
2297880 AAAGAGAAGTCTACGATTATGGTGCCTTATCCTGAAAAGAATGGGATTAGTAAGATTATTAACGT
1 AAAGAGAAGTCTACGATTATGATGCCTTATCCTGAAAAGAATGGGATTAGTAAGAGTATTAACGT
*
2297945 TTGTCTTATTTAAGAGATAAACTTTAA
66 TTGTCTTATTTAAGAGACAAACTTTAA
* * * *
2297972 AAAGAGAAGTCTATGTTTATGATGCCTTATCCTGAAAAGAATAGGGATTAGTATGAGTATTCACG
1 AAAGAGAAGTCTACGATTATGATGCCTTATCCTGAAAAGAAT-GGGATTAGTAAGAGTATTAACG
2298037 TTTGTCTTATTTAAGAGACAAACTTT
65 TTTGTCTTATTTAAGAGACAAACTTT
2298063 GATTCTATCA
Statistics
Matches: 83, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
92 39 0.47
93 44 0.53
ACGTcount: A:0.36, C:0.10, G:0.20, T:0.34
Consensus pattern (92 bp):
AAAGAGAAGTCTACGATTATGATGCCTTATCCTGAAAAGAATGGGATTAGTAAGAGTATTAACGT
TTGTCTTATTTAAGAGACAAACTTTAA
Found at i:2298881 original size:474 final size:472
Alignment explanation
Indices: 2297972--2300422 Score: 2640
Period size: 474 Copynumber: 5.2 Consensus size: 472
2297962 TAAACTTTAA
* * *
2297972 AAAGAGAAGTCTATGTTTATGATGCCTTATCCTGAAAAGAATAGGGATTAGTATGAGTATTCACG
1 AAAGAGAAGACTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCACG
2298037 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAGGAAAAGTTTTTCTTGC
66 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAGGAAAAGTTTTTCTTGC
* * * *
2298102 GACATCAAAGCTTCAATGTCATTTATCCTAGTGAAGGGAATGCGTTTTTGCTTCACATTCTTGAA
131 GACATCAAAGCTTCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCACAATCTTGAA
* * * *
2298167 AAGAACTAAGATAGTTACGAGAATCGATTCTCGTTTTATATATGGTATGAACATTATTTTAAAGG
196 AAGAACTGAGATAGTTACGAGAATCGATTCTTGTCTTATTTAT-GTATGAACATTATTTTAAAGG
* * *
2298232 AAAATAGGCAAAGAAAAGATTCCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAAGAGGA
260 AAAATAGGGAAAGAAAAGATTCCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGA
* * * * *
2298297 GATTATGTTTATAGTTCCTAATCCCAAAACGAATGAAGATCCTTACTAGAATCCAAGTTTGTCTT
325 GATTATGTTTATAGTT-CTAAACACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTC
*
2298362 ATTCGAGGCAC-AAGCTTAGGCTTTACAAAAATTGGTGGG-AAAAAGCCTTTCTTGCGAAACGAA
389 ATTCGAGGCACGAA-CTTAGACTTTAC-AAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACGAA
* * *
2298425 TGCATCAATACGATGTATCAT
452 AGCATCAATATGATGTATCCT
* ** * * * *
2298446 ACAGAGAAGACTCCGTTTATGTTGCCTTATCTTGAAAAGAATAGGGATTAGTAT-ATGTATTCAT
1 AAAGAGAAGACTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGA-GTATTCAC
* * *
2298510 GTTTGTCTTATTTAAGAGACAAACTTTGATT-TCACCCAAAACGGTGGAAGGAAAAGTTTTTCTT
65 GTTTGTCTTATTTAAGAGACAAACTTTGATTCT-ATCAAAAACAGTGGAAGGAAAAGTTTTTCTT
* * * * * * *
2298574 GCGGCATCAAAGCTTTAATGTCGTGTATCCTAATGAAGGGATTATATTTTTGCTTCACACTCTTG
129 GCGACATCAAAGCTTCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCACAATCTTG
*
2298639 AAAAGAACTGAGATAGTTACGAGAATCGATTCATGTCTTATTTATGTATGAACATTATTTTAAAG
194 AAAAGAACTGAGATAGTTACGAGAATCGATTCTTGTCTTATTTATGTATGAACATTATTTTAAAG
* * * *
2298704 GAAAATAGGGAAAGAAAAGATTCCCATGCAAAAGAAAATCATCCATATCATTTATCTTGATTAGG
259 GAAAATAGGGAAAGAAAAGATTCCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGG
* * *
2298769 AGATTATGTTTATAGTTCTTAAACACAAAATGAATGAAAATCATTACTAGAATCGATGTTTGTCT
324 AGATTATGTTTATAGTTC-TAAACACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCT
* *
2298834 CATTTGAGGCACGAACTTAGACTTTACAAAATCTGGTGGGAAAAAAGCCTTTCTTGTGAAACGAA
388 CATTCGAGGCACGAACTTAGACTTTACAAAAT-TGGTGGGAAAAAAGCCTTTCTTGCGAAACGAA
* *
2298899 AGCATTAATATGATGTATGCT
452 AGCATCAATATGATGTATCCT
* * ** * **
2298920 AAAGAGAAAACTATGTTTTTGGAACCTTATCCGGAAAAGAATGGGGATTAGTATGAGTATTCATA
1 AAAGAGAAGACTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCACG
* * * * * *
2298985 TTTGTCTTACTCAAGAGACAAACTTTAATTCTATCAAAAAAAGTGGAAAGAAAATCTTTTTCTTG
66 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAGGAAAA-GTTTTTCTTG
* * * * * * * * * *
2299050 TGGCACCAAAGCATCAATGTCATGTTTCCTAATG-AGGGAATGTCTTTTGGCTTCCCAAACTTTA
130 CGACATCAAAGCTTCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCACAATCTTGA
* * * * * * *
2299114 AATG-ATTGAAGACT-GCTATGAGAATCGA-TCTTTGTCTTATTTAAGGGATGAACTTTGATTTT
195 AAAGAACTG-AGA-TAGTTACGAGAATCGATTC-TTGTCTTATTT-ATGTATGAACATT-ATTTT
* * * * * * * * * * * *
2299176 -ACGAAAAATAGGGCAAAGAAAGGTTTTCGACGCAAAAAAAAATCTTTAACATCATTTATACTAA
255 AAAGGAAAATAGGG-AAAGAAAAGATTCCCATGCAAAAGAAAATCATCAATATCATTTATCCTAA
* * ** * * *
2299240 TGAGGAGAGTGTGTTTACGGTATCT-AA-ACGAAA--AATGAAGATCATTACAAGAATCCATGTT
319 TGAGGAGATTATGTTTATAGT-TCTAAACACAAAATGAATGAAGATCATTACTAGAATCCAAGTT
** * * * * *
2299301 TGTCGT-ATTTAAGGCACAAACTTAGACTTTACAAAAAATGGTGGGAAAAACGCTTTTCTTGTGA
383 TGTC-TCATTCGAGGCACGAACTTAGACTTTAC-AAAATTGGTGGGAAAAAAGCCTTTCTTGCGA
* * *
2299365 AACAAAAGCATTAAAATGATGTATCCT
446 AACGAAAGCATCAATATGATGTATCCT
* * ** *
2299392 AAAGAGAAAACTATGTTTATGTTGCCTTATCCTGAGAAA-AATGGGGATTAGTAAAAGTATTCAT
1 AAAGAGAAGACTATGTTTATGGTGCCTTATCCTGA-AAAGAATGGGGATTAGTATGAGTATTCAC
* * * * *
2299456 GTTTGTCTTATTTAGGAGACAAACTTTGATTCCATCAAAAACTGTGGAAGGAAAAGTTTTTCATA
65 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAGGAAAAGTTTTTCTTG
* * * * *
2299521 CGACATCAAAGCTTCAATGTCATATATCCTAATAAAGGAAATGTGTTTTTTCTTCACATTCTTGA
130 CGACATCAAAGCTTCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCACAATCTTGA
* ** ** * ** *
2299586 AAAAAACAAAGGCAATTGTGGGAATCGATTCTTGTCTTATTTATGGTATGAACATTATTTTAAAG
195 AAAGAACTGAGATAGTTACGAGAATCGATTCTTGTCTTATTTAT-GTATGAACATTATTTTAAAG
* * * *
2299651 GAAAATAGGCAAAGAAAAGATTCCCACGCAAAAGAAAATCATCAATATCAGTTATCCAAATGAGG
259 GAAAATAGGGAAAGAAAAGATTCCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGG
* * * *
2299716 AGATTATGTTTATAGCTCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCTAAGTTTGTCT
324 AGATTATGTTTATAG-TTCTAAACACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCT
* * * *
2299781 CATTCGAGGCAGGAGCTTAGACTTTACAAAAATTGGTGAG-AAAAAGCCTTTCTTGCAAAACGAA
388 CATTCGAGGCACGAACTTAGACTTTAC-AAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACGAA
* *
2299845 TGCATCAATACGATGTATCCT
452 AGCATCAATATGATGTATCCT
* * *
2299866 AAATAGAAGTCTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTGTGAGTATTCACG
1 AAAGAGAAGACTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCACG
* *
2299931 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAATGGAAGCAAAAGTTTTTCTTGC
66 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAGGAAAAGTTTTTCTTGC
* * ** * * * * *
2299996 GACACCAAAGCATT-AATTTCATGTATCAAAATGAAAGGAACGTGTTTTGGC-TCCCAATC-TCA
131 GACATCAAAGC-TTCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCACAATCTTGA
* * * * *
2300058 TAAACAA-TGGAGATTGGTACGAGAATCGATGCTTGTCTTATTTATG-AGTTGAACTTTTATTTT
195 -AAAGAACT-GAGATAGTTACGAGAATCGATTCTTGTCTTATTTATGTA--TGAAC-ATTATTTT
* *** * * * * *
2300121 -AAGGAAAATAGGGCAAAGAGAAGATTTTTAT-AAAAAAAAAATCATTAATGTCATTTATCCCAA
255 AAAGGAAAATAGGG-AAAGAAAAGATTCCCATGCAAAAGAAAATCATCAATATCATTTATCCTAA
* * * * * * *
2300184 AGAGGAGAATATGTTTATAGTGCTACATACAGAATGATTGAAGATCATT--T---ATCCAAGTTT
319 TGAGGAGATTATGTTTATAGTTCTAAACACAAAATGAATGAAGATCATTACTAGAATCCAAGTTT
* ** * ** *
2300244 GTCTCATTCGAGGCCCGGGCTTATACTTTACAAAATTGGCCGGAAAAAGGCCTTTCTT-CTGAAA
384 GTCTCATTCGAGGCACGAACTTAGACTTTACAAAATTGGTGGGAAAAAAGCCTTTCTTGC-GAAA
*
2300308 TGAAAGCATCAATATGATGTATCCT
448 CGAAAGCATCAATATGATGTATCCT
* *
2300333 AAAGAGAAGTCTATGTTTATGGTGCCTTATCCTGAAAAGAAT-GGGATTAGTAAGAGTATTCACG
1 AAAGAGAAGACTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCACG
* * * *
2300397 TATGCCTTATTTAAAAGATAAACTTT
66 TTTGTCTTATTTAAGAGACAAACTTT
2300423 AAAAATAAAA
Statistics
Matches: 1643, Mismatches: 293, Indels: 90
0.81 0.14 0.04
Matches are distributed among these distances:
466 52 0.03
467 115 0.07
470 1 0.00
471 98 0.06
472 299 0.18
473 288 0.18
474 604 0.37
475 125 0.08
476 59 0.04
477 2 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (472 bp):
AAAGAGAAGACTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCACG
TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAGGAAAAGTTTTTCTTGC
GACATCAAAGCTTCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCACAATCTTGAA
AAGAACTGAGATAGTTACGAGAATCGATTCTTGTCTTATTTATGTATGAACATTATTTTAAAGGA
AAATAGGGAAAGAAAAGATTCCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAG
ATTATGTTTATAGTTCTAAACACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCAT
TCGAGGCACGAACTTAGACTTTACAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACGAAAGCA
TCAATATGATGTATCCT
Found at i:2300515 original size:93 final size:92
Alignment explanation
Indices: 2300342--2300515 Score: 267
Period size: 93 Copynumber: 1.9 Consensus size: 92
2300332 TAAAGAGAAG
*
2300342 TCTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGATTAGTAAGAGTATTCACGTATGCCTTAT
1 TCTATGTTTATGGTGCCTTAACCTGAAAAGAATGGGATTAGTAAGAGTATTCACGTATGCCTTAT
*
2300407 TTAAAAGATAAACTTTAAAAATAAAAC
66 TTAAAAGACAAACTTTAAAAATAAAAC
* * * *
2300434 TCTATGTTTATGGTGCCTTAACCTGAAAAGAATGGGGATTAGTATGAGTATTCACTTTTGTCTTA
1 TCTATGTTTATGGTGCCTTAACCTGAAAAGAAT-GGGATTAGTAAGAGTATTCACGTATGCCTTA
**
2300499 TTTATGAGACAAACTTT
65 TTTAAAAGACAAACTTT
2300516 GATTCTATCA
Statistics
Matches: 73, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
92 32 0.44
93 41 0.56
ACGTcount: A:0.33, C:0.12, G:0.18, T:0.37
Consensus pattern (92 bp):
TCTATGTTTATGGTGCCTTAACCTGAAAAGAATGGGATTAGTAAGAGTATTCACGTATGCCTTAT
TTAAAAGACAAACTTTAAAAATAAAAC
Found at i:2301326 original size:474 final size:471
Alignment explanation
Indices: 2300435--2302851 Score: 2718
Period size: 474 Copynumber: 5.1 Consensus size: 471
2300425 AAATAAAACT
*
2300435 CTATGTTTATGGTGCCTTAACCTGAAAAGAATGGGGATTAGTATGAGTATTCACT-TTTGTCTTA
1 CTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCA-TGTTTGTCTTA
* * * ** *
2300499 TTTATGAGACAAACTTTGATTCTATCAAAAATGGTGGAAGGAAAAGTTTTTTTTGCGACATCAAA
65 TTTAAGAGACAAACTTTGATTCCACCAAAAACAGTGGAAGGAAAAGTTTTTCTTGCGACATCAAA
* *
2300564 GCTTCAATG-TCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCACATTCTTGAAAAGAACTA
130 GCTTCAATGCT-GTGTATCCTAATGAAGGGAATGTGTTTTTGCTTCACATTCTTGAAAAGAA-TG
* * * * * *
2300628 AGATAGTTACGAGAATCGATTCTTGTTTTATATATGGTAAGAACATTATTTTGAAGGAAAATAGG
193 AGACAGTTACGAGAATCGATTCTTGTCTTATTTAT-GTATGAACATTATTTTAAAGGAAAATGGG
* *
2300693 CAAAGAAAAGATTCCCATGCAAAAGAAAATCATCCATATCATTTATCCTAATGAGGAGATTATGT
257 CAAAGAAAAGATTCCCATGCAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGATTATGT
* * *
2300758 TTATAGTTCCTAATCACAAAATGAATGAAGATCATTACTAGAATTCAAGTTTGTCTCATCCAAGG
322 TTATAGTT-CTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTCGAGG
* * * *
2300823 CACAAACTTAGACTTTACAAAAATTGGTGGGAAAAAGGCTTTTCTTGCGAAATGAAAGAATCAAT
386 CACGAACTTAGACTTTACAAAAATTGGTGGGAAAAA-GCCTTTCTTGCGAAACGAAAGCATCAAT
*
2300888 ATGATGTATCCTACAGAGAAGA
450 ATGATGTATCCTAAAGAGAAGA
* * * * * * *
2300910 CTATGTTTATGTTGCCTTATCTTGAAAAAAATAGGGATCAGTATAAGTATTTATGTTTGTCTTAT
1 CTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTAT
* * * * * *
2300975 TTAAGAGACAAAGTTTGATTCCACCAAGAACGGTGGGAGGAAAAGTTTTTCTTGTGACATCAAAC
66 TTAAGAGACAAACTTTGATTCCACCAAAAACAGTGGAAGGAAAAGTTTTTCTTGCGACATCAAAG
* * *
2301040 CTTTAATGCTGTGTATCCTAATGAATGGAATATGTTTTTGCTTCACATTCTTGAAAAGAACTGAG
131 CTTCAATGCTGTGTATCCTAATGAAGGGAATGTGTTTTTGCTTCACATTCTTGAAAAGAA-TGAG
2301105 ACAGTTACGAGAATCGATTCTTGTCTTATTTATGTATGAACATTATTTTAAAGGAAAATGGGCAA
195 ACAGTTACGAGAATCGATTCTTGTCTTATTTATGTATGAACATTATTTTAAAGGAAAATGGGCAA
* * * *
2301170 AGAAAAGATTCCCATGCAAAACAAAATCGTCCATATCATTTATCCTGATGAGGAGATTATGTTTA
260 AGAAAAGATTCCCATGCAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGATTATGTTTA
* * *
2301235 TAGTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCTCATTTGAGGCAC
325 TAGTTC-TAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTCGAGGCAC
* * * *
2301300 GAACTTAGACTTTACATAATTTGGTGGGCAAAAAGCCTTTCTTGTGAAACGAAAGCATCAGTATG
389 GAACTTAGACTTTACAAAAATTGGTGGG-AAAAAGCCTTTCTTGCGAAACGAAAGCATCAATATG
*
2301365 ATGTATGCTAAAGAGAAGA
453 ATGTATCCTAAAGAGAAGA
* ** * *
2301384 CTATGTTTTTGGAACCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATATTTGTCTTAC
1 CTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTAT
* * * * * * *
2301449 TTAAGAGACAAACTTTAATTCTATCGAAAAA-AGTGGAAAGAAAACCTTTTTCTTGTGACACCAA
66 TTAAGAGACAAACTTTGATTCCA-CCAAAAACAGTGGAAGGAAAA-GTTTTTCTTGCGACATCAA
* * * * ** *
2301513 AGCATCAATGTCATGT-T-TCCTAATG-AGGGAATGTCTTTTGGCTTCCCAAACTTTAAAAGAAT
129 AGCTTCAATG-C-TGTGTATCCTAATGAAGGGAATGTGTTTTTGCTTCACATTCTTGAAAAGAAT
* * * * * *
2301575 GAAGACTGTTATGAGAATCGA-TCTTTGTCTTATTTAAGGGATGAACTTTGATTTTGCAA--AAA
192 G-AGACAGTTACGAGAATCGATTC-TTGTCTTATTT-ATGTATGAACATT-ATTTT-AAAGGAAA
* * * * * * * *
2301637 ATAGGGCAAAGAAAGGTTTTCCACGCAAAAAAAAAAATCTTTAACATCATTTATACTAATGAGGA
252 AT-GGGCAAAGAAAAGATTCCCATGC--AAAAAAAAATCATCAATATCATTTATCCTAATGAGGA
* * ** * * *
2301702 GAGTGTGTTTACGGTATCTAAACGA-AAAATGAATGAAGATCATTACAAGAATCCATGTTTGTCG
314 GATTATGTTTATAGT-TCTAATC-ACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTC-
** * * * * *
2301766 T-ATTTAAGGCACAAACTTAGACTTTACAAAAAATGGTGGGAAAAACGCATTTCTTGTGAAACAA
376 TCATTCGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAA-GCCTTTCTTGCGAAACGA
* * *
2301830 AAGCATTAAAATGATGTATCCTAAAGAGATGA
440 AAGCATCAATATGATGTATCCTAAAGAGAAGA
* * *
2301862 CTATGTTTATGTTGCCTTATCCTGAAAA-AATGGGGATTAGTATAAGTATTCAAGTTTGTCTTAT
1 CTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTAT
* * * * *
2301926 TTAGGTGACAAACTTTGATTCCACCAAAAACTGTGGAAGGAAAAGTTTTTCATACGACATCAAAG
66 TTAAGAGACAAACTTTGATTCCACCAAAAACAGTGGAAGGAAAAGTTTTTCTTGCGACATCAAAG
* * * * *
2301991 CTTCAATGTCAG-GTATCCTAATGAAGGAAATGTGTTTTTTCTTCACATTCTTGAAAAAAATAAA
131 CTTCAATG-CTGTGTATCCTAATGAAGGGAATGTGTTTTTGCTTCACATTCTTGAAAAGAAT-GA
* * * ** *
2302055 GGCAATTACGAGAATCGATTCATGTCTTATTTATGGTATGAACATTATTTTAGTGGAAAATAGGC
194 GACAGTTACGAGAATCGATTCTTGTCTTATTTAT-GTATGAACATTATTTTAAAGGAAAATGGGC
* * *
2302120 AAAGAAAAGATTCCCATGCAAAAGAAAATCATCAATATCAGTTATCCAAATGAGGAGATTATGTT
258 AAAGAAAAGATTCCCATGCAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGATTATGTT
*
2302185 TATAGTTCCTAATCACAAAATGAATGAAGATGC-TTACCAGAATCCAAGTTTGTCTCATTCGAGG
323 TATAGTT-CTAATCACAAAATGAATGAAGAT-CATTACTAGAATCCAAGTTTGTCTCATTCGAGG
* *
2302249 CACGAGA-TTAGACTTTACAAAATTTGGTGGGAAAAAGCCTTTCTTGCGAAACGAATGCATCAAT
386 CACGA-ACTTAGACTTTACAAAAATTGGTGGGAAAAAGCCTTTCTTGCGAAACGAAAGCATCAAT
* * *
2302313 ACGATGTATCCTAAATAGAAGT
450 ATGATGTATCCTAAAGAGAAGA
* * *
2302335 CTATGTTTATGGTGCCTTATCTTGAAAAGAATGGGGATTAGTGTGAGTATTCACGTTTGTCTTAT
1 CTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTAT
* * * * *
2302400 TTAAGAGAAAAACTTTGATTCGATCAAAAACAGTGGAAGAAAAAGTTTTTCTTGCGACACCAAAG
66 TTAAGAGACAAACTTTGATTCCACCAAAAACAGTGGAAGGAAAAGTTTTTCTTGCGACATCAAAG
* * * * * * * *
2302465 CATCAAT-TTCATGTATCCTAATGAAAGGAATGTGTTTTGGC-TCCCAATC-TCATAAAGAATGG
131 CTTCAATGCT-GTGTATCCTAATGAAGGGAATGTGTTTTTGCTTCACATTCTTGA-AAAGAAT-G
** * * * *
2302527 AGATTGGTACGAGAATCGATGCTTGTCTTATTTATGAGATGAACTTTGATTTT-AAGGAAAATAG
193 AGACAGTTACGAGAATCGATTCTTGTCTTATTTATG-TATGAACATT-ATTTTAAAGGAAAAT-G
* * * ** * * * * * *
2302591 GACAAGGAGAAGATTTTCAT-AAAAAAAAAAGTCATTAATAGCATTTATCCCAAAGAGGAGAATA
255 GGCAAAGAAAAGATTCCCATGCAAAAAAAAA-TCATCAATATCATTTATCCTAATGAGGAGATTA
* * * *
2302655 TGTTTATAGTGCTACAT-ACAGAATGAATGAAGATCATTACTAGAATCCAGGTTTATCTCATTCG
319 TGTTTATAGTTCTA-ATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTCG
* * * * * *
2302719 AGACACGAGCTTATATTTTACAAAAATTGGTGGGAAAAAAGCCTTTTCTTCCGAAATGAAAGCAT
383 AGGCACGAACTTAGACTTTACAAAAATTGGTGGG-AAAAAGCC-TTTCTTGCGAAACGAAAGCAT
* *
2302784 CAATATGATGTATGCTAAAGAGAAGT
446 CAATATGATGTATCCTAAAGAGAAGA
*
2302810 CTATGTTTATGGTGCCTTATCCTGAAAAGAAT-AGGATTAGTA
1 CTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTA
2302852 ACGCTTGTCT
Statistics
Matches: 1628, Mismatches: 267, Indels: 95
0.82 0.13 0.05
Matches are distributed among these distances:
472 4 0.00
473 209 0.13
474 667 0.41
475 331 0.20
476 90 0.06
477 139 0.09
478 184 0.11
479 4 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (471 bp):
CTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTAT
TTAAGAGACAAACTTTGATTCCACCAAAAACAGTGGAAGGAAAAGTTTTTCTTGCGACATCAAAG
CTTCAATGCTGTGTATCCTAATGAAGGGAATGTGTTTTTGCTTCACATTCTTGAAAAGAATGAGA
CAGTTACGAGAATCGATTCTTGTCTTATTTATGTATGAACATTATTTTAAAGGAAAATGGGCAAA
GAAAAGATTCCCATGCAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGATTATGTTTAT
AGTTCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTCGAGGCACGA
ACTTAGACTTTACAAAAATTGGTGGGAAAAAGCCTTTCTTGCGAAACGAAAGCATCAATATGATG
TATCCTAAAGAGAAGA
Found at i:2303774 original size:474 final size:475
Alignment explanation
Indices: 2302895--2305343 Score: 2807
Period size: 474 Copynumber: 5.2 Consensus size: 475
2302885 AGAGAAGTTA
* * *
2302895 ATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCACGTTTATCTTATTT
1 ATGTTTATGTTGCCTTATCCTGAAAAGAATGGGGATTAGTATAAGTATTCACGTTTGTCTTATTT
* *
2302960 AAGAGGCAAACTTTGATTCTATCAAAAATAGTGGAAGGAAAAGTTTTTCTTGCGACATCAAAGCT
66 AAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAGGAAAAGTTTTTCTTGCGACATCAAAGCT
* * * * * *
2303025 TCAATGTCATGTATCCTAGTGAACGGAATGCGTTTTTGCTTCACATTCTTGAAAAGAACTAAGAC
131 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCACATTCTTGAAAAAAACTGAGAT
* * * * *
2303090 AGTTACGAGAATTGATTCTCGTTTTATATATGGTATGAGCATTATTTTAAAGGAAAATAGGCAAA
196 AGTTACGAGAATCGATTCTTGTCTTATTTAT-GTATGAACATTATTTTAAAGGAAAATAGGCAAA
*
2303155 GAAAAGATTCCCATGCAAAAGAAAATCATCCATATCATTTATCCT-AAAGAGGAGATTATGTTTA
260 GAAAAGATTCCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAAAGAGGAGATTATGTTTA
* * *
2303219 TAGTACCTAATCACAAAATAAATGAAGATCATTACTAGAAAT-CAAGTTTGTCTCATCCATGGCA
325 TAGTACCTAATCACAAAATGAATGAAGATCATTACTAG-AATCCAAGTTTGTCTCATTCAAGGCA
*
2303283 CGAACTTAGACTTTACAAAAATTGGTGGGGAAAAAGCTTTTCTTGCGAAACGAAAGCATCAATAT
389 CGAACTTAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTGCGAAACGAAAGCATCAATAT
* *
2303348 GATGTATCATACAGAGAAGACT
454 GATGTATCCTAAAGAGAAGACT
* * * * * *
2303370 ACGTTTATCTTGCCTTATCTTGAAAAGAATAGGGATTAGTATACGTATTCATGTTTGTCTTATTT
1 ATGTTTATGTTGCCTTATCCTGAAAAGAATGGGGATTAGTATAAGTATTCACGTTTGTCTTATTT
* * * *
2303435 AAGAGACAAACTTTGATT-TCACCCAAAACGGTGGAAGGAAAAGTTTTTCTTGCGGCATCAAAGC
66 AAGAGACAAACTTTGATTCT-ATCAAAAACAGTGGAAGGAAAAGTTTTTCTTGCGACATCAAAGC
* * *
2303499 TTTAATGTCATGTATCCTAATGAAGGGAATATATTTTTGCTTCACATTCTTGAAAAAAACTGAGA
130 TTCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCACATTCTTGAAAAAAACTGAGA
*
2303564 TAGTTACGAGAATCGATTCATGTCTTATTTATGTATGAACATTATTTTAAAGGAAAATAGGCAAA
195 TAGTTACGAGAATCGATTCTTGTCTTATTTATGTATGAACATTATTTTAAAGGAAAATAGGCAAA
* * *
2303629 GAAAAGATTCCCATGCAAAAGAAAATCATCCATATCATTTATCCTGATA-AGGAGATTATGTTTA
260 GAAAAGATTCCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAAAGAGGAGATTATGTTTA
* * * **
2303693 TAGTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAC
325 TAGTACCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTCAAGGCAC
* * * * *
2303758 GAACTTAGACTTTAC-AAAATCTGGTGGGAAAAAAGCCTTTCTCGTGAAACGAAATCATTAATAT
390 GAACTTAGACTTTACAAAAAT-TGGTGGGGAAAAAGCCTTTCTTGCGAAACGAAAGCATCAATAT
* * *
2303822 GATGTATGCTAAAGAGAAAACA
454 GATGTATCCTAAAGAGAAGACT
* *** * ** *
2303844 ATGTTTTTGGAACCTTATCCTGAAAAAGAATGGGGATTAGTATGAGTATTCATATTTGTCTTACT
1 ATGTTTATGTTGCCTTATCCTG-AAAAGAATGGGGATTAGTATAAGTATTCACGTTTGTCTTATT
* * * * * *
2303909 TAAGAGACAAACTTTAATTCTATCAAAAAAAGTGGAAAGAAAATCTTTTTCTTGTGACACCAAAG
65 TAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAGGAAAA-GTTTTTCTTGCGACATCAAAG
* * * * * ** * * *
2303974 CATCAATGTCATGTTTCCTAATG-AGGGAATGTCTTTTGGCTTCCCAAACTT-TAAAAGATTGAA
129 CTTCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCACATTCTTGAAAAAAACTG-A
* * * * * *
2304037 GACT-GTTATGAGAATCGA-TCTTTGTCTTATTTAAGGGATGAACTTTGATTTT-ACGAAAAATA
193 GA-TAGTTACGAGAATCGATTC-TTGTCTTATTT-ATGTATGAACATT-ATTTTAAAGGAAAATA
* * * * * * * * * * *
2304099 GGACAAAGAAAGGTTTTCCACG-AAAAAAAAATCTTTAACATCATTTATACT-AATGAGGAGAGT
254 GG-CAAAGAAAAGATTCCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAAAGAGGAGATT
* ** * *
2304162 ATGTTCACGGTACCTAATCGA-AAAATGAATGAAGATCATTACAAGAATCCATGTTTGTCAT-AT
318 ATGTTTATAGTACCTAATC-ACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTC-TCAT
* * * * * ** * *
2304225 TTAAGGCACAAACATAGACTTTAGAAAAAATGGT-GGGAAAAATGTTTTTCTTGTGAAACAAAAG
381 TCAAGGCACGAACTTAGACTTTACAAAAATTGGTGGGGAAAAA-GCCTTTCTTGCGAAACGAAAG
* * *
2304289 CATTAAAATGATGTACCCTAAAGAGAAGACT
445 CATCAATATGATGTATCCTAAAGAGAAGACT
* *
2304320 ATGTTTATGTTGCCTTATCCTGAAAA-AATGAGGATTAGTATAAGTATTCATGTTTGTCTTATTT
1 ATGTTTATGTTGCCTTATCCTGAAAAGAATGGGGATTAGTATAAGTATTCACGTTTGTCTTATTT
* * * * *
2304384 AGGAGACAAACTTTGATTCCATCAAAAACTGTGGAAGGAAAAGTTTTTCATACGACATCAAAGCT
66 AAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAGGAAAAGTTTTTCTTGCGACATCAAAGCT
* * ** **
2304449 TCAATGTCATGTATCCTAATGAAGGAAATGTGTTTTTTCTTCACATTCTTGAAAAAAACAAAGGC
131 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCACATTCTTGAAAAAAACTGAGAT
*
2304514 AATTACGAGAATCGATTCTTGTCTTATTTATGGTATGAACATTATTTTAAAGGAAAATAGGCAAA
196 AGTTACGAGAATCGATTCTTGTCTTATTTAT-GTATGAACATTATTTTAAAGGAAAATAGGCAAA
* * *
2304579 AAAAAGATTCCCATGCAAAAGAAAATCATCAATATCAGTTA-CCCAAAAGAGGAGATTATGTTTA
260 GAAAAGATTCCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAAAGAGGAGATTATGTTTA
* * * *
2304643 TAGTTCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCAAGTTTGTCTTATTCGAGGCAC
325 TAGTACCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTCAAGGCAC
* * * *** *
2304708 GAGCTTAGAATTTACAAAAATTGGT-GGGAAAAAGCCTTTCTTGCGAAATGAATTTATCAATACG
390 GAACTTAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTGCGAAACGAAAGCATCAATATG
* *
2304772 ATGTATCCTAAATAGAAGTCT
455 ATGTATCCTAAAGAGAAGACT
* *
2304793 ATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTGTAAGTATTCACGTTTGTCTTATTT
1 ATGTTTATGTTGCCTTATCCTGAAAAGAATGGGGATTAGTATAAGTATTCACGTTTGTCTTATTT
* * * * *
2304858 AAGAGACAAACTTTGATTCTATAAAAAATAGTGGAAGCAAAAGTTTTTCTTGCGACACCAAAGCA
66 AAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAGGAAAAGTTTTTCTTGCGACATCAAAGCT
* * * * * *
2304923 TCAATTTCATGTATCCTAATGAAAGGAATGTG-TTTTGAC-TCCCAATC-TCATAAAGAA-TGGA
131 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTG-CTTCACATTCTTGA-AAAAAACT-GA
* * * * * *
2304984 GATTGGTACTAGAATCGATGCTTGTCTTATTTATGAGATGAACTTTTATTTT-AAGGAAAATAGG
193 GATAGTTACGAGAATCGATTCTTGTCTTATTTATG-TATGAAC-ATTATTTTAAAGGAAAATA-G
* ** * * * * *
2305048 GCAAAGAGAAGATTTTCAT--AAAAAAAAAGTCATTAATAACATTTATCC-CAAAGAGGAGAATA
255 GCAAAGAAAAGATTCCCATGCAAAAGAAAA-TCATCAATATCATTTATCCTAAAAGAGGAGATTA
* * *
2305110 TGTTTATAGT-GCTACAT-ACAGAATGAATGAAGATCATTACTAGAATCCAGGTTTGTCTCATTC
319 TGTTTATAGTACCTA-ATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTC
* * * * * * * *
2305173 AAGACACGAGCTTATATTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTCCGAAATGAAAGCTT
383 AAGGCACGAACTTAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTGCGAAACGAAAGCAT
*
2305238 CAATATGATGTATCCTAAAGAGAAGTCT
448 CAATATGATGTATCCTAAAGAGAAGACT
* * *
2305266 ATGTTTATGGTGCCTTATCCTGAACAGAAT-GGGATTAGTA-AGAGTATTAACGTTTGTCTTATT
1 ATGTTTATGTTGCCTTATCCTGAAAAGAATGGGGATTAGTATA-AGTATTCACGTTTGTCTTATT
*
2305329 TAAGAGATAAACTTT
65 TAAGAGACAAACTTT
2305344 AAAAAGAGAA
Statistics
Matches: 1659, Mismatches: 275, Indels: 83
0.82 0.14 0.04
Matches are distributed among these distances:
471 1 0.00
472 127 0.08
473 308 0.19
474 635 0.38
475 336 0.20
476 226 0.14
477 26 0.02
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.32
Consensus pattern (475 bp):
ATGTTTATGTTGCCTTATCCTGAAAAGAATGGGGATTAGTATAAGTATTCACGTTTGTCTTATTT
AAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAGGAAAAGTTTTTCTTGCGACATCAAAGCT
TCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCACATTCTTGAAAAAAACTGAGAT
AGTTACGAGAATCGATTCTTGTCTTATTTATGTATGAACATTATTTTAAAGGAAAATAGGCAAAG
AAAAGATTCCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAAAGAGGAGATTATGTTTAT
AGTACCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTCAAGGCACG
AACTTAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTGCGAAACGAAAGCATCAATATGA
TGTATCCTAAAGAGAAGACT
Found at i:2304736 original size:950 final size:943
Alignment explanation
Indices: 2302894--2305343 Score: 3072
Period size: 950 Copynumber: 2.6 Consensus size: 943
2302884 AAGAGAAGTT
** *
2302894 AATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCACGTTTATCTTATT
1 AATGTTTATGGAACCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCACGTTTGTCTTATT
* * * *
2302959 TAAGAGGCAAACTTTGATTCTATCAAAAATAGTGGAAGGAAAAGTTTTTCTTGCGACATCAAAGC
66 TAAGAGACAAACTTTGATTCTATCAAAAAAAGTGGAAAGAAAAGTTTTTCTTGCGACACCAAAGC
* * * * * * *
2303024 TTCAATGTCATGTATCCTAGTGAACGGAATG-CGTTTTTGCTTCACATTCTTGAAAAGAACT-AA
131 ATCAATGTCATGTATCCTAATGAAAGGAATGTC-TTTTGGCTTCCCAATCTTCAAAAGAA-TGAA
* * * * * * * * *
2303087 GACAGTTACGAGAATTGAT-TCTCGTTTTATATATGGTATGAGCATTATTTTAAAGGAAAATAGG
194 GACTGTTATGAGAATCGATCT-TTGTCTTATTTATGGGATGAACTTTATTTT-AAGGAAAATAGG
* * * * ** *
2303151 CAAAGAAAAGATTCCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAAGAGGAGATTATGT
257 CAAAGAAAGGTTTTCCA-G-AAAAAAAAATCATTAATATCATTTATCCTAAAGAGGAGAATATGT
* * *
2303216 TTATAGTACCTAATCACAAAATAAATGAAGATCATTACTAGAAAT-CAAGTTTGTCTCATCCATG
320 TTATAGTACCTAATCACAAAATGAATGAAGATCATTACTAG-AATCCAAGTTTGTCTCATTCAAG
*
2303280 GCACGAACTTAGACTTTACAAAAATTGGTGGGGAAAAAGCTTTTCTTGCGAAACGAAAGCATCAA
384 GCACGAACTTAGACTTTACAAAAATTGGT-GGGAAAAAGCTTTTCTTGCGAAACGAAAGCATTAA
* * * * *
2303345 TATGATGTATCATACAGAGAAGACTACGTTTATCTTGCCTTATCTTGAAAAGAAT-AGGGATTAG
448 TATGATGTATCCTAAAGAGAAGACTATGTTTATGTTGCCTTATCCTGAAAA-AATGA-GGATTAG
* * *
2303409 TATACGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTCACCCAAAACGGTGGAAGGA
511 TATAAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCACCAAAAACGGTGGAAGGA
* * * * *
2303474 AAAGTTTTTCTTGCGGCATCAAAGCTTTAATGTCATGTATCCTAATGAAGGGAATATATTTTTGC
576 AAAGTTTTTCATACGACATCAAAGCTTCAATGTCATGTATCCTAATGAAGGAAATATATTTTTGC
** * *
2303539 TTCACATTCTTGAAAAAAACTGAGATAGTTACGAGAATCGATTCATGTCTTATTTATGTATGAAC
641 TTCACATTCTTGAAAAAAACAAAGACAATTACGAGAATCGATTCATGTCTTATTTATGTATGAAC
* * *
2303604 ATTATTTTAAAGGAAAATAGGCAAAGAAAAGATTCCCATGCAAAAGAAAATCATCCATATCATTT
706 ATTATTTTAAAGGAAAATAGGCAAAAAAAAGATTCCCATGCAAAAGAAAATCATCAATATCAGTT
** * *
2303669 ATCCTGATAAGGAGATTATGTTTATAGTTCTTAATCACAAAATGAATGAAGATCATTACTAGAAT
771 ATCCCAAAAAGGAGATTATGTTTATAGTTCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* * *
2303734 CCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAATCTGGTGGGAAAAAAGCCTTTC
836 CCAAGTTTGTCTCATTCGAGGCACGAACTTAGAATTTACAAAATCTGGTGGG-AAAAAGCCTTTC
* * * *
2303799 TCGTGAAACGAAATCATTAATATGATGTATGCTAAAGAGAAAAC
900 TCGCGAAACGAAATCATCAATACGATGTATCCTAAAGAGAAAAC
* ** *
2303843 AATGTTTTTGGAACCTTATCCTGAAAAAGAATGGGGATTAGTATGAGTATTCATATTTGTCTTAC
1 AATGTTTATGGAACCTTATCCTG-AAAAGAATGGGGATTAGTATGAGTATTCACGTTTGTCTTAT
* * *
2303908 TTAAGAGACAAACTTTAATTCTATCAAAAAAAGTGGAAAGAAAATCTTTTTCTTGTGACACCAAA
65 TTAAGAGACAAACTTTGATTCTATCAAAAAAAGTGGAAAGAAAA-GTTTTTCTTGCGACACCAAA
* * * * *
2303973 GCATCAATGTCATGTTTCCTAATG-AGGGAATGTCTTTTGGCTTCCCAAACTTTAAAAGATTGAA
129 GCATCAATGTCATGTATCCTAATGAAAGGAATGTCTTTTGGCTTCCCAATCTTCAAAAGAATGAA
* * *
2304037 GACTGTTATGAGAATCGATCTTTGTCTTATTTAAGGGATGAACTTTGATTTTACGAAAAATAGGA
194 GACTGTTATGAGAATCGATCTTTGTCTTATTTATGGGATGAACTTT-ATTTTAAGGAAAATAGG-
* * * * *
2304102 CAAAGAAAGGTTTTCCACGAAAAAAAAATCTTTAACATCATTTATACTAATGAGGAGAGTATGTT
257 CAAAGAAAGGTTTTCCA-GAAAAAAAAATCATTAATATCATTTATCCTAAAGAGGAGAATATGTT
* ** * * *
2304167 CACGGTACCTAATCGA-AAAATGAATGAAGATCATTACAAGAATCCATGTTTGTCAT-ATTTAAG
321 TATAGTACCTAATC-ACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTC-TCATTCAAG
* * * * * * *
2304230 GCACAAACATAGACTTTAGAAAAAATGGTGGGAAAAATGTTTTTCTTGTGAAACAAAAGCATTAA
384 GCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAA-GCTTTTCTTGCGAAACGAAAGCATTAA
* *
2304295 AATGATGTACCCTAAAGAGAAGACTATGTTTATGTTGCCTTATCCTGAAAAAATGAGGATTAGTA
448 TATGATGTATCCTAAAGAGAAGACTATGTTTATGTTGCCTTATCCTGAAAAAATGAGGATTAGTA
* * *
2304360 TAAGTATTCATGTTTGTCTTATTTAGGAGACAAACTTTGATTCCATCAAAAACTGTGGAAGGAAA
513 TAAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCACCAAAAACGGTGGAAGGAAA
* * *
2304425 AGTTTTTCATACGACATCAAAGCTTCAATGTCATGTATCCTAATGAAGGAAATGTGTTTTTTCTT
578 AGTTTTTCATACGACATCAAAGCTTCAATGTCATGTATCCTAATGAAGGAAATATATTTTTGCTT
* *
2304490 CACATTCTTGAAAAAAACAAAGGCAATTACGAGAATCGATTCTTGTCTTATTTATGGTATGAACA
643 CACATTCTTGAAAAAAACAAAGACAATTACGAGAATCGATTCATGTCTTATTTAT-GTATGAACA
2304555 TTATTTTAAAGGAAAATAGGCAAAAAAAAGATTCCCATGCAAAAGAAAATCATCAATATCAGTTA
707 TTATTTTAAAGGAAAATAGGCAAAAAAAAGATTCCCATGCAAAAGAAAATCATCAATATCAGTTA
*
2304620 -CCCAAAAGAGGAGATTATGTTTATAGTTCCTAATCACAAAATGAATGAAGATCCTTACTAGAAT
772 TCCCAAAA-AGGAGATTATGTTTATAGTTCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* *
2304684 CCAAGTTTGTCTTATTCGAGGCACGAGCTTAGAATTTACAAAAAT-TGGTGGGAAAAAGCCTTTC
836 CCAAGTTTGTCTCATTCGAGGCACGAACTTAGAATTTAC-AAAATCTGGTGGGAAAAAGCCTTTC
* * * * * **
2304748 TTGCGAAATGAATTTATCAATACGATGTATCCTAAATAGAAGTC
900 TCGCGAAACGAAATCATCAATACGATGTATCCTAAAGAGAAAAC
* ** * *
2304792 TATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTGTAAGTATTCACGTTTGTCTTATT
1 AATGTTTATGGAACCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCACGTTTGTCTTATT
2304857 TAAGAGACAAACTTTGATTCTAT-AAAAAATAGTGG-AAGCAAAAGTTTTTCTTGCGACACCAAA
66 TAAGAGACAAACTTTGATTCTATCAAAAAA-AGTGGAAAG-AAAAGTTTTTCTTGCGACACCAAA
* * * *
2304920 GCATCAATTTCATGTATCCTAATGAAAGGAATGTGTTTTGAC-TCCCAATC-TCATAAAGAATGG
129 GCATCAATGTCATGTATCCTAATGAAAGGAATGTCTTTTGGCTTCCCAATCTTCA-AAAGAATGA
* * *
2304983 AGATTGGTACT-AGAATCGATGC-TTGTCTTATTTATGAGATGAACTTTTATTTTAAGGAAAATA
193 AGACTGTTA-TGAGAATCGAT-CTTTGTCTTATTTATGGGATGAAC-TTTATTTTAAGGAAAATA
* * * *
2305046 GGGCAAAGAGAAGATTTT-CATAAAAAAAAAGTCATTAATAACATTTATCCCAAAGAGGAGAATA
255 -GGCAAAGA-AAGGTTTTCCAGAAAAAAAAA-TCATTAATATCATTTATCCTAAAGAGGAGAATA
* * *
2305110 TGTTTATAGT-GCTACAT-ACAGAATGAATGAAGATCATTACTAGAATCCAGGTTTGTCTCATTC
317 TGTTTATAGTACCTA-ATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTC
* * * * * * *
2305173 AAGACACGAGCTTATATTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTCCGAAATGAAAGC-T
381 AAGGCACGAACTTAGACTTTACAAAAATTGGTGGG-AAAAAGCTTTTCTTGCGAAACGAAAGCAT
* * *
2305237 TCAATATGATGTATCCTAAAGAGAAGTCTATGTTTATGGTGCCTTATCCTGAACAGAATG-GGAT
445 T-AATATGATGTATCCTAAAGAGAAGACTATGTTTATGTTGCCTTATCCTGAA-AAAATGAGGAT
* * *
2305301 TAGTA-AGAGTATTAACGTTTGTCTTATTTAAGAGATAAACTTT
508 TAGTATA-AGTATTCATGTTTGTCTTATTTAAGAGACAAACTTT
2305344 AAAAAGAGAA
Statistics
Matches: 1286, Mismatches: 183, Indels: 67
0.84 0.12 0.04
Matches are distributed among these distances:
945 5 0.00
946 183 0.14
947 165 0.13
948 96 0.07
949 277 0.22
950 493 0.38
951 67 0.05
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.32
Consensus pattern (943 bp):
AATGTTTATGGAACCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCACGTTTGTCTTATT
TAAGAGACAAACTTTGATTCTATCAAAAAAAGTGGAAAGAAAAGTTTTTCTTGCGACACCAAAGC
ATCAATGTCATGTATCCTAATGAAAGGAATGTCTTTTGGCTTCCCAATCTTCAAAAGAATGAAGA
CTGTTATGAGAATCGATCTTTGTCTTATTTATGGGATGAACTTTATTTTAAGGAAAATAGGCAAA
GAAAGGTTTTCCAGAAAAAAAAATCATTAATATCATTTATCCTAAAGAGGAGAATATGTTTATAG
TACCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTCAAGGCACGAA
CTTAGACTTTACAAAAATTGGTGGGAAAAAGCTTTTCTTGCGAAACGAAAGCATTAATATGATGT
ATCCTAAAGAGAAGACTATGTTTATGTTGCCTTATCCTGAAAAAATGAGGATTAGTATAAGTATT
CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCACCAAAAACGGTGGAAGGAAAAGTTTTTC
ATACGACATCAAAGCTTCAATGTCATGTATCCTAATGAAGGAAATATATTTTTGCTTCACATTCT
TGAAAAAAACAAAGACAATTACGAGAATCGATTCATGTCTTATTTATGTATGAACATTATTTTAA
AGGAAAATAGGCAAAAAAAAGATTCCCATGCAAAAGAAAATCATCAATATCAGTTATCCCAAAAA
GGAGATTATGTTTATAGTTCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGT
CTCATTCGAGGCACGAACTTAGAATTTACAAAATCTGGTGGGAAAAAGCCTTTCTCGCGAAACGA
AATCATCAATACGATGTATCCTAAAGAGAAAAC
Found at i:2305425 original size:93 final size:92
Alignment explanation
Indices: 2305254--2305436 Score: 294
Period size: 93 Copynumber: 2.0 Consensus size: 92
2305244 GATGTATCCT
* *
2305254 AAAGAGAAGTCTATGTTTATGGTGCCTTATCCTGAACAGAATGGGATTAGTAAGAGTATTAACGT
1 AAAGAGAAGTCTATGTTTATGATGCCTTATCCTGAAAAGAATGGGATTAGTAAGAGTATTAACGT
*
2305319 TTGTCTTATTTAAGAGATAAACTTTAA
66 TTGTCTTATTTAAGAGACAAACTTTAA
* * * *
2305346 AAAGAGAAGTCTATGTTTGTGATGCCTTATCTTGAAAAGAATGGGGATTAGTATGAGTATTCACG
1 AAAGAGAAGTCTATGTTTATGATGCCTTATCCTGAAAAGAAT-GGGATTAGTAAGAGTATTAACG
2305411 TTTGTCTTATTTAAGAGACAAACTTT
65 TTTGTCTTATTTAAGAGACAAACTTT
2305437 GATTCTATCA
Statistics
Matches: 83, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
92 38 0.46
93 45 0.54
ACGTcount: A:0.33, C:0.10, G:0.21, T:0.36
Consensus pattern (92 bp):
AAAGAGAAGTCTATGTTTATGATGCCTTATCCTGAAAAGAATGGGATTAGTAAGAGTATTAACGT
TTGTCTTATTTAAGAGACAAACTTTAA
Found at i:2306472 original size:93 final size:92
Alignment explanation
Indices: 2306296--2306474 Score: 277
Period size: 93 Copynumber: 1.9 Consensus size: 92
2306286 TATCCTAAAT
* *
2306296 AGAAGTCTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGATTAGTAAGAGTATTAACGTTTGT
1 AGAAGTCTATATTTATGGTGCCTTATCCTGAAAAGAATGGGATTACTAAGAGTATTAACGTTTGT
*
2306361 CATATTTAAGAGATAAACTTTAAAAAG
66 CATATTTAAGAGACAAACTTTAAAAAG
* ** *
2306388 AGAAGTCTATATTTATGGTGCCTTATCCTGAAATGAATGGGGATTACTGTGAGTATTCACGTTTG
1 AGAAGTCTATATTTATGGTGCCTTATCCTGAAAAGAAT-GGGATTACTAAGAGTATTAACGTTTG
*
2306453 TCTTATTTAAGAGACAAACTTT
65 TCATATTTAAGAGACAAACTTT
2306475 GATTCTATCA
Statistics
Matches: 78, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
92 36 0.46
93 42 0.54
ACGTcount: A:0.33, C:0.11, G:0.21, T:0.36
Consensus pattern (92 bp):
AGAAGTCTATATTTATGGTGCCTTATCCTGAAAAGAATGGGATTACTAAGAGTATTAACGTTTGT
CATATTTAAGAGACAAACTTTAAAAAG
Found at i:2306955 original size:566 final size:566
Alignment explanation
Indices: 2305820--2307514 Score: 2587
Period size: 566 Copynumber: 3.0 Consensus size: 566
2305810 GATGTATCCT
* * *
2305820 AAAA-AGAAGTCTATTTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTGCGAGTATTCAC
1 AAAAGAGAAGTCTATATTTATGGTGCCTTATCCTGAAAAGAATGGGGATTACTGTGAGTATTCAC
* * * *
2305884 GTTTGTCTTACTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAGCAAAAGTTTTTCATG
66 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTG
* * * * ** * *
2305949 CGACACCAAAGCATCAATTTCATGTATCCTAATGAAAGGAA-TGTGTTTTGGC-TCCCAATC-T-
131 CGACATCAACGCTTCAATGTCATGTATCCTAATG-AAGGAAGTGTGTTTTTTCTTCACATTCTTG
* * * * * * *
2306010 -CATAAAGAATGG-AGATTGGTACGAGAATCGATGCTTGTCTTTTTTATGAG-ATGAACTTTATT
195 AAAAAAACAAAGGCA-A-T--TACGAGAATCGATTCTTGTCTTATTTATG-GTATGAACATTATT
* ** * * * *
2306072 TT-AAGGAAAATAGGGCAAAGAGAAGATTTTCAT--AAAAAAAAAGTCATTAATAACATTTATCC
255 TTAAAGGAAAATA-GGCAAAGAAAAGATTCCCATGCAAAAGAAAA-TCATCAATATCAGTTAT-C
* * * * *
2306134 CAA-AGAGGAGAATATGTTTATAG-TGCTACAT-ACAGAATGAATGAAGATCATTACTAGAATCC
317 CAACTGAGGAGATTATGTTTATAGTTCCTA-ATCACAAAATGAATGAAGATCCTTACTAGAATCC
* * * * * * *
2306196 AGGTTTGTCTCATTTGAGACACGAGCTTATATTTTACAAAAATTGGTGGGAAAAAAACTTTTCTT
381 AAGTTTGTCTCATTCGAGGCACGAGCTTAGACTTTACAAAAATTGGTGGG-AAAAAGCCTTTCTT
* *
2306261 TCGAAATGAAA-GCATCAATATGAA-GTATCCTAAATAGAAGTCTATGTTTATGGTGCCTTATCC
445 GCGAAAT-AAATGCATCAATA-CAATGTATCCTAAATAGAAGTCTATGTTTATGGTGCCTTATCC
2306324 TGAAAAGAATGGGATTAGTAAGAGTATTAACGTTTGTCATATTTAAGAGATAAACTTTA
508 TGAAAAGAATGGGATTAGTAAGAGTATTAACGTTTGTCATATTTAAGAGATAAACTTTA
*
2306383 AAAAGAGAAGTCTATATTTATGGTGCCTTATCCTGAAATGAATGGGGATTACTGTGAGTATTCAC
1 AAAAGAGAAGTCTATATTTATGGTGCCTTATCCTGAAAAGAATGGGGATTACTGTGAGTATTCAC
2306448 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTG
66 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTG
2306513 CGACATCAACGCTTCAATGTCATGTATCCTAATGAAGGAAGTGTGTTTTTTCTTCACATTCTTGA
131 CGACATCAACGCTTCAATGTCATGTATCCTAATGAAGGAAGTGTGTTTTTTCTTCACATTCTTGA
2306578 AAAAAACAAAGGCAATTACGAGAATCGATTCTTGTCTTATTTATGGTATGAACATTATTTTAAAG
196 AAAAAACAAAGGCAATTACGAGAATCGATTCTTGTCTTATTTATGGTATGAACATTATTTTAAAG
2306643 GAAAATAGGCAAAGAAAAGATTCCCATGCAAAAGAAAATCATCAATATCAGTTATCCAACTGAGG
261 GAAAATAGGCAAAGAAAAGATTCCCATGCAAAAGAAAATCATCAATATCAGTTATCCAACTGAGG
*
2306708 AGATTATGTTTATAGTTCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCAAATTTGTCT
326 AGATTATGTTTATAGTTCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCAAGTTTGTCT
* *
2306773 TATTCGAGGCACGAGCTTAGAGTTTACAAAAATTGGTGGGAAAAAGCCTTTCTTGCGAAATAAAT
391 CATTCGAGGCACGAGCTTAGACTTTACAAAAATTGGTGGGAAAAAGCCTTTCTTGCGAAATAAAT
2306838 GCATCAATACAATGTATCCTAAATAGAAGTCTATGTTTATGGTGCCTTATCCTGAAAAGAATGGG
456 GCATCAATACAATGTATCCTAAATAGAAGTCTATGTTTATGGTGCCTTATCCTGAAAAGAATGGG
2306903 ATTAGTAAGAGTATTAACGTTTGTCATATTTAAGAGATAAACTTTA
521 ATTAGTAAGAGTATTAACGTTTGTCATATTTAAGAGATAAACTTTA
* *
2306949 AAAAGAGAAGTCTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTACTATGAGTATTCAC
1 AAAAGAGAAGTCTATATTTATGGTGCCTTATCCTGAAAAGAATGGGGATTACTGTGAGTATTCAC
* *
2307014 ATTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTG
66 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTG
2307079 CGACATCAACGCTTCAATGTCATGTATCCTAATGAAGGAAGTGTGTTTTTTCTTCACATTCTTGA
131 CGACATCAACGCTTCAATGTCATGTATCCTAATGAAGGAAGTGTGTTTTTTCTTCACATTCTTGA
2307144 AAAAAACAAAGGCAATTACGAGAATCGATTCTTGTCTTATTTATGGTATGAACATTATTTTAAAG
196 AAAAAACAAAGGCAATTACGAGAATCGATTCTTGTCTTATTTATGGTATGAACATTATTTTAAAG
2307209 GAAAATAGGCAAAGAAAAGATTCCCATGCAAAAGAAAATCATCAATATCAGTTATCCAACTGAGG
261 GAAAATAGGCAAAGAAAAGATTCCCATGCAAAAGAAAATCATCAATATCAGTTATCCAACTGAGG
*
2307274 AGATTATGTTTATAGTTCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCTAAGTTTGTCT
326 AGATTATGTTTATAGTTCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCAAGTTTGTCT
* * **
2307339 CATTCGAGGCAGGAGCTTAGACTTTACAAAAATTGGTGGGAAAAAGCCTTTCTTGCAAAACGAAT
391 CATTCGAGGCACGAGCTTAGACTTTACAAAAATTGGTGGGAAAAAGCCTTTCTTGCGAAATAAAT
*
2307404 GCATCAATACGATGTATCCTAAATAGAAGTCTATGTTTATGGTGCCTTATCCTGAAAAGAATAGG
456 GCATCAATACAATGTATCCTAAATAGAAGTCTATGTTTATGGTGCCTTATCCTGAAAAGAAT-GG
** * *
2307469 GATTAGTGTGAGTATTCACGTTTGT-ATTATTTAAGAGACAAACTTT
520 GATTAGTAAGAGTATTAACGTTTGTCA-TATTTAAGAGATAAACTTT
2307515 GATTCGATCA
Statistics
Matches: 1050, Mismatches: 64, Indels: 32
0.92 0.06 0.03
Matches are distributed among these distances:
563 10 0.01
564 157 0.15
565 72 0.07
566 674 0.64
567 127 0.12
568 9 0.01
569 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (566 bp):
AAAAGAGAAGTCTATATTTATGGTGCCTTATCCTGAAAAGAATGGGGATTACTGTGAGTATTCAC
GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTG
CGACATCAACGCTTCAATGTCATGTATCCTAATGAAGGAAGTGTGTTTTTTCTTCACATTCTTGA
AAAAAACAAAGGCAATTACGAGAATCGATTCTTGTCTTATTTATGGTATGAACATTATTTTAAAG
GAAAATAGGCAAAGAAAAGATTCCCATGCAAAAGAAAATCATCAATATCAGTTATCCAACTGAGG
AGATTATGTTTATAGTTCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCAAGTTTGTCT
CATTCGAGGCACGAGCTTAGACTTTACAAAAATTGGTGGGAAAAAGCCTTTCTTGCGAAATAAAT
GCATCAATACAATGTATCCTAAATAGAAGTCTATGTTTATGGTGCCTTATCCTGAAAAGAATGGG
ATTAGTAAGAGTATTAACGTTTGTCATATTTAAGAGATAAACTTTA
Found at i:2307907 original size:473 final size:473
Alignment explanation
Indices: 2306950--2307986 Score: 1372
Period size: 473 Copynumber: 2.2 Consensus size: 473
2306940 TAAACTTTAA
* *
2306950 AAAGAGAAGTCTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTACTATGAGTATTCACA
1 AAAGAGAAGTCTATGTTTATGGTGCCTTATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCACG
* * *
2307015 TTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGC
65 TTTGTCTTATTTAAGAGACAAACTTTGATTCGATCAAAAACGGTGGAAGCAAAAGTTTTTCTTGC
* * * * * * *
2307080 GACATCAACGCTTCAATGTCATGTATCCTAATGAAGGAAGTGTGTTTTTTCTTCACATTCTTGAA
130 AACACCAAAGCATCAATGTCATGTATCCTAATGAAGGAAGTGTGTTTTTGCTTCACAATCTCGAA
* * *
2307145 AAAAACAAAGGCAATTACGAGAATCGATTCTTGTCTTATTTATGGTATGAACATTATTTTAAAGG
195 AAAAACAAAGACAATTACGAGAATCAATGCTTGTCTTATTTATGGTATGAACATTATTTTAAAGG
* *
2307210 AAAATAGGCAAAGAAAAGATTCCCATGCAAAAGAAAATCATCAATATCAGTTATCCAACTGAGGA
260 AAAATAGGCAAAGAAAAGATTCCCATACAAAAGAAAATCATCAATATCAGTTATCCAACAGAGGA
* * * * ** *
2307275 GATTATGTTTATAGTTCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCTAAGTTTGTCTC
325 AAATATATTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCAAGTTTGTCTC
* * *
2307340 ATTCGAGGCAGGAGCTTAGACTTTACAAAAATTGGTGGGAAAAAGCCTTTCTTGCAAAACGAATG
390 ATTCGAGGCACGAGCTTAGACTTTACAAAAATTGGCGGGAAAAAGCCTTTCTTGCAAAACGAAAG
2307405 CATCAATACGATGTATCCT
455 CATCAATACGATGTATCCT
* *
2307424 AAATAGAAGTCTATGTTTATGGTGCCTTATCCTGAAAAGAATAGGGATTAGTGTGAGTATTCACG
1 AAAGAGAAGTCTATGTTTATGGTGCCTTATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCACG
*
2307489 TTTGTATTATTTAAGAGACAAACTTTGATTCGATCAAAAACGGTGGAAGCAAAAGTTTTTCTTGC
65 TTTGTCTTATTTAAGAGACAAACTTTGATTCGATCAAAAACGGTGGAAGCAAAAGTTTTTCTTGC
* * * *
2307554 AACACCAAAGCATCAATTTCATGTATCCTAATGAAAGGAA-TGTG-TTTTGGTTCCCAATCTCGT
130 AACACCAAAGCATCAATGTCATGTATCCTAATG-AAGGAAGTGTGTTTTTGCTTCACAATCTCGA
* *** *** * *
2307617 AAAGAATGGAGATTGTTACGAGAATCAATGCTTGTCTTATTTATGAG-ATGAACTTTGATTTTGA
194 AAAAAACAAAGACAATTACGAGAATCAATGCTTGTCTTATTTATG-GTATGAACATT-ATTTTAA
** ** * * *
2307681 A-GAAAATAGGGCAAAGGGAAGATTGTCATACAAAA-AAAGTCATTAATATCATTTATCCCAA-A
257 AGGAAAATA-GGCAAAGAAAAGATTCCCATACAAAAGAAAATCATCAATATCAGTTAT-CCAACA
* * *
2307743 GAGGAAAATATATTTATAGTGCCTAAAT-ACAGAATGAATGAAGATTAATACTAGAATCCACGTT
320 GAGGAAAATATATTTATAGTGCCT-AATCACAAAATGAATGAAGATCAATACTAGAATCCAAGTT
* *
2307807 TGTCTCATTCGAGGCACGAGCTTATACTTTAC-AAAATTGGCGGGAAAAAGGCCTTTCTT-CTGA
384 TGTCTCATTCGAGGCACGAGCTTAGACTTTACAAAAATTGGCGGGAAAAA-GCCTTTCTTGC-AA
* *
2307870 AATGAAAGCATCAATATGATGTATCCT
447 AACGAAAGCATCAATACGATGTATCCT
*
2307897 AAAGAGAAGTCTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGATTAGTAAGAGTATTCACGT
1 AAAGAGAAGTCTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGATTAGTATGAGTATTCACGT
** *
2307962 TTCCCTTATTTAAGAGATAAACTTT
66 TTGTCTTATTTAAGAGACAAACTTT
2307987 AAAAATAAAA
Statistics
Matches: 490, Mismatches: 65, Indels: 18
0.86 0.11 0.03
Matches are distributed among these distances:
472 59 0.12
473 236 0.48
474 189 0.39
475 6 0.01
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (473 bp):
AAAGAGAAGTCTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGATTAGTATGAGTATTCACGT
TTGTCTTATTTAAGAGACAAACTTTGATTCGATCAAAAACGGTGGAAGCAAAAGTTTTTCTTGCA
ACACCAAAGCATCAATGTCATGTATCCTAATGAAGGAAGTGTGTTTTTGCTTCACAATCTCGAAA
AAAACAAAGACAATTACGAGAATCAATGCTTGTCTTATTTATGGTATGAACATTATTTTAAAGGA
AAATAGGCAAAGAAAAGATTCCCATACAAAAGAAAATCATCAATATCAGTTATCCAACAGAGGAA
AATATATTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCAAGTTTGTCTCA
TTCGAGGCACGAGCTTAGACTTTACAAAAATTGGCGGGAAAAAGCCTTTCTTGCAAAACGAAAGC
ATCAATACGATGTATCCT
Found at i:2308079 original size:93 final size:92
Alignment explanation
Indices: 2307903--2308079 Score: 273
Period size: 93 Copynumber: 1.9 Consensus size: 92
2307893 TCCTAAAGAG
* *
2307903 AAGTCTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGATTAGTAAGAGTATTCACGTTTCCCT
1 AAGTCTATGTTTATGGTGCCTTAACCTGAAAAGAATGGGATTAGTAAGAGTATTCACGTTTACCT
*
2307968 TATTTAAGAGATAAACTTTAAAAATAA
66 TATTTAAGAGACAAACTTTAAAAATAA
* * *
2307995 AAGTCTTTGTTTATGGTGCCTTAACCTGAAAAGAATGAGGATTAGTATGAGTATTCACGTTTATC
1 AAGTCTATGTTTATGGTGCCTTAACCTGAAAAGAATG-GGATTAGTAAGAGTATTCACGTTTACC
* *
2308060 TTATTTATGAGACAGACTTT
65 TTATTTAAGAGACAAACTTT
2308080 GATTCTATCA
Statistics
Matches: 76, Mismatches: 8, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
92 35 0.46
93 41 0.54
ACGTcount: A:0.33, C:0.12, G:0.19, T:0.37
Consensus pattern (92 bp):
AAGTCTATGTTTATGGTGCCTTAACCTGAAAAGAATGGGATTAGTAAGAGTATTCACGTTTACCT
TATTTAAGAGACAAACTTTAAAAATAA
Found at i:2308892 original size:474 final size:475
Alignment explanation
Indices: 2308002--2311018 Score: 3769
Period size: 474 Copynumber: 6.4 Consensus size: 475
2307992 TAAAAGTCTT
* * * *
2308002 TGTTTATGGTGCCTTAACCTGAAAAGAATGAGGATTAGTATGAGTATTCACGTTTATCTTATTTA
1 TGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTA
* * *
2308067 TGAGACAGACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTTTTTGCGACATCAAAGCT
66 AGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAG-TTTTTCTTGCGACATCAAAGCT
*
2308132 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCACATTCTTGAAAAGAACTAAGAC
130 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCACATTCTTGAAAAGAACTGAGAC
* * *
2308197 AGTTACGAGAATCGATTCTTGTTTTATATATGGTAAGAACATTATTTTAAAGGAAAATAGGCAAA
195 AGTTACGAGAATCGATTCTTGTCTTATTTATGGTATGAACATTATTTTAAAGGAAAATAGGCAAA
* *
2308262 GAAAAGATTCCCATGCAAAAGAAAATCATCCATATCATTTATCCTAATGAGGAGATTATATTTAT
260 GAAAAGATTCCCATGCAAAAGAAAATCATCCATATCATTTATCCTAATGAGGAGAATATGTTTAT
* * * *
2308327 AGTTCCTAATCACAAAATGAATGAAGATCATTACTAGAATTCAAGTTTGTCTCATCCAAGGCATG
325 AGTTCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTCGAGGCACG
* * * *
2308392 AACTTAAACTTTACAAAAATTGGTGGGAAAAAGGCTTTTCTTGCGAAATGAAAGAATCAATATGA
390 AACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAATGAAAGCATCAATATGA
*
2308457 TGTATCCTATAGAGAAGACTA
455 TGTATCCTAAAGAGAAGACTA
* * * * * *
2308478 CGTTTATGTTGCCTTATCTTGAAAAGAATAGGGATTAGTATAAGTATTTATGTTTGTCTTATTTA
1 TGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTA
* * *
2308543 AGAGACAAACTTTGATTCCT-CCAAAAATGGTGGAAGGAAAAGTTTTTCTTGCGACATCAAACCT
66 AGAGACAAACTTTGATT-CTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACATCAAAGCT
* *
2308607 TCAATG-CTGTGTATCCTAATGAAGGGAATATGTTTTTGCTTCACATTCTTGAAAAGAACTGAGA
130 TCAATGTC-ATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCACATTCTTGAAAAGAACTGAGA
* *
2308671 CAATTACGAGAATCGATTCTTGTCTTATTTAT-GTATGAACATTATTTTAAAGGAAAATGGGCAA
194 CAGTTACGAGAATCGATTCTTGTCTTATTTATGGTATGAACATTATTTTAAAGGAAAATAGGCAA
* * * * *
2308735 AGAAAAGATTCCCACGCAAAAGAAAATCGTCCATATCATTTATCCTGATGAGGAGATTATGCTTA
259 AGAAAAGATTCCCATGCAAAAGAAAATCATCCATATCATTTATCCTAATGAGGAGAATATGTTTA
* * * * *
2308800 TAGTTCTTAATCACAAAATGAATGAAGATCATTACTAGAGTCCATGTTTATCTCATTTGAGGCAC
324 TAGTTCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTCGAGGCAC
* * * * * * *
2308865 GAACTTAGACTTTACATAATTTGGTGGGCAAAAAGCCATTCTTGTGAAACGAAAGCATCAGTATG
389 GAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAATGAAAGCATCAATATG
* *
2308930 ATGTATGCTAAAGAGAAGACGA
454 ATGTATCCTAAAGAGAAGACTA
* ** *
2308952 TGTTTTTGGAACCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATATTTGTCTTATTTA
1 TGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTA
* ** * * * * * *
2309017 ATAGACAAACTTTGATTCTATCAAAAAAAGTGGAAAGAAAACCTTTTTCCTGTGACACCAAAGCA
66 AGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAA-GTTTTTCTTGCGACATCAAAGCT
* * * * ** * *
2309082 TCAATGTCAT-TTTCCTAATG-AGGGAATGTCTTTTGGCTTCCCAAACTTTAAAAG-ATTGGAGA
130 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCACATTCTTGAAAAGAACT-GAGA
* * * * * * * * * *
2309144 CTGTTACGAGAATCGATCCTTATCTTATTTAAGGGATGAACTTTGA-TTTCACGAAAAATAGGGT
194 CAGTTACGAGAATCGATTCTTGTCTTATTTATGGTATGAACATT-ATTTTAAAGGAAAATA-GGC
* * * ** * * * *
2309208 AAAGAAAGGTTTTCCACAT--AAAAAAAAATCATTAACATCATTTATACTAATGAGAAGAATGTG
257 AAAGAAAAG-ATTCC-CATGCAAAAGAAAATCATCCATATCATTTATCCTAATGAGGAGAATATG
* * * * * **
2309271 TTTACAGTACCGAATCGA-AAAATGAATGAAGATCATTACAAGAATCCATGTTTGTCAT-ATTTA
320 TTTATAGTTCCTAATC-ACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTC-TCATTCG
* * **
2309334 AGGCACGAACTTAGAATTTACAAAAA-TGGTGGGAAAAAAGCTTTTCTTGCGAAACAAAAGCATC
383 AGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAATGAAAGCATC
*
2309398 AATATGATGTATCCTAAGGAGAAGACTA
448 AATATGATGTATCCTAAAGAGAAGACTA
* * * *
2309426 TGTTTATGTTGCCTTATCTTGGAAAA-AATGGGGATTAGTATAAGTATTCTTGTTTGTCTTATTT
1 TGTTTATGGTGCCTTATCCT-GAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTT
* * * *
2309490 AGGAGACAAACTTTGATTCCATCAAAAAAGGTGAAAGGAAAAGTTTTTCTTGCGACATCAAAGCT
65 AAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACATCAAAGCT
* * * * *
2309555 TCAATGTCATGTATCCTAGTGAAGGAAATGTGTTTTTGCTTCACAATCTTGAAAAAAACTGAGGC
130 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCACATTCTTGAAAAGAACTGAGAC
* *
2309620 GGTTACGAGAATCGATTCTTGTCTTATTCATGGTATGAACATTATTTTAAAGGAAAATAGGCAAA
195 AGTTACGAGAATCGATTCTTGTCTTATTTATGGTATGAACATTATTTTAAAGGAAAATAGGCAAA
* * * * *
2309685 GAAAATATTCCCATGCAAAAGAAAATCATCCATATCAGTTATCCAAATGAAGAGATTATGTTTAT
260 GAAAAGATTCCCATGCAAAAGAAAATCATCCATATCATTTATCCTAATGAGGAGAATATGTTTAT
* *
2309750 CGTTCCTAATCACAAAATGAATGAAGTTCATTACTAGAATCCAAGTTTGTCTCATTCGAGGCACG
325 AGTTCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTCGAGGCACG
* * * *
2309815 AGCTTAGACTTTACAAAAATTGGTGGGAAAAAA-CCTTTCTTGCAAAATGAATGCATCAATACGA
390 AACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAATGAAAGCATCAATATGA
* *
2309879 TGTATCCTAAATAGAAGTCTA
455 TGTATCCTAAAGAGAAGACTA
*
2309900 TGTTTATGGTGCCTTATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCACGTTTGTCTTACTTT
1 TGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTA-TTT
* *
2309964 -AGAGACAAACATTGATTCTATCAAAAACGGTGGAAGGAAAAATTTTTCTTGCGACATCAAAGCT
65 AAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACATCAAAGCT
* * *
2310028 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTACTTCACATCCTTGAAAAGAACTGAGAT
130 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCACATTCTTGAAAAGAACTGAGAC
* * * ** *
2310093 ATTTACGGGAATCGATTTTTACACTTATTTCA-GGTATGAACATGT-TTTTAAAAGAAAATAGGC
195 AGTTACGAGAATCGATTCTT-GTCTTATTT-ATGGTATGAACAT-TATTTTAAAGGAAAATAGGC
* * * ** *
2310156 AAAGAAAAGTTTCCTATGCAAAAAAAAATCATCCATATCATTTATCCTAAACAAGAGAATATGTT
257 AAAGAAAAGATTCCCATGCAAAAGAAAATCATCCATATCATTTATCCTAATGAGGAGAATATGTT
* * * *
2310221 TATTGTTCCTAATCACAAAATGAATGAAGATCATTACTAGAAACCAAATTTATCTCATTCG-GGA
322 TATAGTTCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTCGAGG-
* * * * *
2310285 TACGAACTTAGACTTTATAAAAATTGGTGGGAAAAAAGCCTTTCTTACGAAATGAAAGCGTGAAT
386 CACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAATGAAAGCATCAAT
* *
2310350 ATGATGTATCCTAAAGAAAAGTCTA
451 ATGATGTATCCTAAAGAGAAGACTA
* * *
2310375 TGTTTATGGTGCCTTATCCTCAAAAGAATGGGGATTAGTATGAGTATTCAAGTTTCTCTTATTTA
1 TGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTA
* * *
2310440 AGAGACAAACTTTGATTCTAT-ATAAATGGTGGAAAGAAAAGTTTTTCTTGCGACATCAAAGCTT
66 AGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACATCAAAGCTT
* * * * *
2310504 GAATGTCGTGTATCCTAACGAAGGGAATGTGTTTTTGCTTGACATTCTTGAAAAGAACTGAGATA
131 CAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCACATTCTTGAAAAGAACTGAGACA
* * * * * *
2310569 GTCACAAGAATTGATTCTTGTCTTACTTGTGGTAGGAACATTATTTTAAAGGAAAATAGGCAAAG
196 GTTACGAGAATCGATTCTTGTCTTATTTATGGTATGAACATTATTTTAAAGGAAAATAGGCAAAG
* * * **
2310634 AAAAGATTCCCATGTAAAAGAAATTCATCCATATCATTTATCCAAAACAGGAGAATATGTTTATA
261 AAAAGATTCCCATGCAAAAGAAAATCATCCATATCATTTATCCTAATGAGGAGAATATGTTTATA
* * * * * *
2310699 CTTCCTAATCATC-AAATGAATTAAGATCATTACTAGAAACTAAGTTTGCCTCATTTGAGGCACG
326 GTTCCTAATCA-CAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTCGAGGCACG
* * * * * ** *
2310763 AGCTTAGACTTTGCAAAATTTGGTAGTAAAAAAGCCTTTCTTGCGAAATGAAAAAATCAGTATGA
390 AACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAATGAAAGCATCAATATGA
2310828 TGTA-CGCTAAAGAGAAGACTA
455 TGTATC-CTAAAGAGAAGACTA
** * * * *
2310849 TGTTTATGGAACCTTATTCTAAAAACAATAGGGATTAGTATGAGTATTCATGTTTGTCTTATTTA
1 TGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTA
* * * * * *
2310914 AGAGGCAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAA-TATTTTCTTGTGACACCAAAGCA
66 AGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGT-TTTTCTTGCGACATCAAAGCT
* *
2310978 TCAATGTCATGTTTCCTAATG-AGGGAATGTGTTTTGGCTTC
130 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTC
2311019 CCAAACTGTA
Statistics
Matches: 2169, Mismatches: 333, Indels: 80
0.84 0.13 0.03
Matches are distributed among these distances:
472 5 0.00
473 262 0.12
474 1162 0.54
475 588 0.27
476 148 0.07
477 4 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (475 bp):
TGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTA
AGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACATCAAAGCTT
CAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCACATTCTTGAAAAGAACTGAGACA
GTTACGAGAATCGATTCTTGTCTTATTTATGGTATGAACATTATTTTAAAGGAAAATAGGCAAAG
AAAAGATTCCCATGCAAAAGAAAATCATCCATATCATTTATCCTAATGAGGAGAATATGTTTATA
GTTCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTCGAGGCACGA
ACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAATGAAAGCATCAATATGAT
GTATCCTAAAGAGAAGACTA
Found at i:2311817 original size:13 final size:13
Alignment explanation
Indices: 2311799--2311824 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2311789 CAATTTTTGG
2311799 TGTATCGATACAT
1 TGTATCGATACAT
2311812 TGTATCGATACAT
1 TGTATCGATACAT
2311825 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2311836 original size:32 final size:33
Alignment explanation
Indices: 2311779--2311843 Score: 105
Period size: 32 Copynumber: 2.0 Consensus size: 33
2311769 TACAAGCCAA
**
2311779 TGTATCGATACAATTTTTGGTGTATCGATACAT
1 TGTATCGATACAATACTTGGTGTATCGATACAT
2311812 TGTATCGATAC-ATACTTGGTGTATCGATACAT
1 TGTATCGATACAATACTTGGTGTATCGATACAT
2311844 GTTTGGCTAC
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 19 0.63
33 11 0.37
ACGTcount: A:0.28, C:0.14, G:0.18, T:0.40
Consensus pattern (33 bp):
TGTATCGATACAATACTTGGTGTATCGATACAT
Found at i:2311849 original size:19 final size:18
Alignment explanation
Indices: 2311779--2311849 Score: 62
Period size: 19 Copynumber: 4.0 Consensus size: 18
2311769 TACAAGCCAA
2311779 TGTATCGATACAATTTTTGG
1 TGTATCGATAC-A-TTTTGG
2311799 TGTATCGATACA---T--
1 TGTATCGATACATTTTGG
*
2311812 TGTATCGATACATACTTGG
1 TGTATCGATACAT-TTTGG
2311831 TGTATCGATACATGTTTGG
1 TGTATCGATACAT-TTTGG
2311850 CTACTGCCAA
Statistics
Matches: 43, Mismatches: 2, Indels: 13
0.74 0.03 0.22
Matches are distributed among these distances:
13 12 0.28
15 1 0.02
17 1 0.02
19 18 0.42
20 11 0.26
ACGTcount: A:0.25, C:0.13, G:0.21, T:0.41
Consensus pattern (18 bp):
TGTATCGATACATTTTGG
Found at i:2313931 original size:21 final size:20
Alignment explanation
Indices: 2313902--2313944 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
2313892 GGCTAGTGTG
* *
2313902 GGGACTGCCCGGTTGTGACCT
1 GGGACTG-CCGGTCGCGACCT
*
2313923 GGGAGTGCCGGTCGCGACCT
1 GGGACTGCCGGTCGCGACCT
2313943 GG
1 GG
2313945 TGGTGCTACC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.09, C:0.28, G:0.44, T:0.19
Consensus pattern (20 bp):
GGGACTGCCGGTCGCGACCT
Found at i:2314405 original size:13 final size:13
Alignment explanation
Indices: 2314387--2314412 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2314377 ATAATCACCC
2314387 TGTATCGATACAA
1 TGTATCGATACAA
2314400 TGTATCGATACAA
1 TGTATCGATACAA
2314413 AGAAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2316513 original size:15 final size:15
Alignment explanation
Indices: 2316493--2316523 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
2316483 ATTTCGTTTG
*
2316493 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
2316508 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
2316523 G
1 G
2316524 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:2320600 original size:13 final size:13
Alignment explanation
Indices: 2320582--2320607 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2320572 CAATTTTGGG
2320582 TGTATCGATACAT
1 TGTATCGATACAT
2320595 TGTATCGATACAT
1 TGTATCGATACAT
2320608 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2320621 original size:32 final size:33
Alignment explanation
Indices: 2320562--2320626 Score: 98
Period size: 32 Copynumber: 2.0 Consensus size: 33
2320552 TACAAGCCAA
*
2320562 TGTATCGATACAATTTTGGGTGTATCGATACAT
1 TGTATCGATACAATCTTGGGTGTATCGATACAT
2320595 TGTATCGATAC-ATACTT-GGTGTATCGATACAT
1 TGTATCGATACAAT-CTTGGGTGTATCGATACAT
2320627 GTTTGGCTAC
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 17 0.57
33 13 0.43
ACGTcount: A:0.28, C:0.14, G:0.20, T:0.38
Consensus pattern (33 bp):
TGTATCGATACAATCTTGGGTGTATCGATACAT
Found at i:2322157 original size:471 final size:473
Alignment explanation
Indices: 2321274--2322290 Score: 1270
Period size: 471 Copynumber: 2.2 Consensus size: 473
2321264 CTAAAGACCT
** *
2321274 TGAAAAGAATGGGGATTAGTATAAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCC
1 TGAAAAGAATGGGGATTAGTAGGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
* *** * * ** * *
2321339 ATAAAAAATGGTGGAAGAAAATCTTGTTCTTGCGACATCAAAGGTTCAATGTCACGTATCCTAAT
66 ATCAAAAACAATGGAAGAAAATCTTGTTCTTGAGACACCAAAGCATCAACGTCACGTATCCAAAT
* * ** * *
2321404 GAAGGGAATGTGTTTTTGCTTCACATTCTTGAAAAGAATTGAGACAGTTACGAGAATGATTCTTG
131 GAAGAGAATGTGTTTTGGCTTCACAAACTTGAAAAGAATTGAGACAGTTACGAGAATAATCCTTG
* *
2321469 TCTTATTTATAGTGTGAACATTATTTAAAAGGAAAATAAGCAAAGAAAAGATTTCCATACAAAAA
196 TCTTATTTATAGGGTGAACATTATTTAAAAGAAAAATAAGCAAAGAAAAGATTTCCATACAAAAA
* **
2321534 AAGTCATTGATATCATTTATCCTAAAGAGGAGAATATGTTTATAGTGCCTAATTACAAAATAAAT
261 AAGTCATTCATATCATTTATCCTAAAGAGGAGAATATGTTTATAGTGCCTAAGGACAAAATAAAT
* * *
2321599 GAGGATCATTACTAGAATCCAAATTTGTCTCATTCGAGGCGCGAACTTAGACTTTACAAAATTTG
326 GAAGATCATTACTAGAATCCAAATTTGTCTCATTCGAGGCACGAACTTAGACTTTACAAAAATTG
* * * *
2321664 GTGGGAAAAAAGCCTTTCTTGCGAAACGAAAGTGTCAATAT-GATGTATGCTAAAGAG-AGACTA
391 GTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGTATCAATATCG-TGTATCCTAAAGAGAAAACTA
2321727 TGTTTATGGTGCCTTATCA
455 TGTTTATGGTGCCTTATCA
* * *
2321746 TGAAAAGAATGGGGATTAATAGGAGTATTTATGTTTGTCTTATTTATGAGACAAA-TTTGATTCT
1 TGAAAAGAATGGGGATTAGTAGGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
* * *
2321810 ATCAAAAACAATGGAAAGAAAATCTT-TTCTT-ATAGCACCAAAGCATCAACGTCATGTTTCCAA
66 ATCAAAAACAATGG-AAGAAAATCTTGTTCTTGAGA-CACCAAAGCATCAACGTCACGTATCCAA
* * *
2321873 ATG-AGAGAATGTGTTTTGGCTTCCCAAACTTTAAAAG-ATTGGAGACTA-TTATGAGAATCAAT
129 ATGAAGAGAATGTGTTTTGGCTTCACAAACTTGAAAAGAATT-GAGAC-AGTTACGAGAAT-AAT
* * * *
2321935 CCTTGTCTTATTTA-AGGGATGAACTTTGATTT-TACGAAAAATAGGGCAAAGAAAAGATTTCCA
191 CCTTGTCTTATTTATAGGG-TGAACATT-ATTTAAAAGAAAAATA-AGCAAAGAAAAGATTTCCA
** ** * *
2321998 TGTAAAAAAA-TCATTCATATCATTTATCCTAATTAGGAGAATGTGTTTATGGTGCCTAAAGGA-
253 TACAAAAAAAGTCATTCATATCATTTATCCTAAAGAGGAGAATATGTTTATAGTGCCT-AAGGAC
* ** * * *
2322061 AAAATGAATGAAGATCATTACTAGAATCCATGTTTTTCGT-ATTTGAGGCATGAACTTAGACTTT
317 AAAATAAATGAAGATCATTACTAGAATCCAAATTTGTC-TCATTCGAGGCACGAACTTAGACTTT
* * *
2322125 TCAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGTATCAATATCGTGTATCCTAATG
381 ACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGTATCAATATCGTGTATCCTAAAG
*
2322190 AGAAAACTATGTTTATGGTGCCTTATCC
446 AGAAAACTATGTTTATGGTGCCTTATCA
* *
2322218 TGAAAAGAATAGAGATTAGT-GTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
1 TGAAAAGAATGGGGATTAGTAG-GAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
2322282 TATCAAAAA
65 TATCAAAAA
2322291 TGGTGGATGG
Statistics
Matches: 466, Mismatches: 65, Indels: 27
0.84 0.12 0.05
Matches are distributed among these distances:
469 3 0.01
470 46 0.10
471 233 0.50
472 167 0.36
473 17 0.04
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (473 bp):
TGAAAAGAATGGGGATTAGTAGGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
ATCAAAAACAATGGAAGAAAATCTTGTTCTTGAGACACCAAAGCATCAACGTCACGTATCCAAAT
GAAGAGAATGTGTTTTGGCTTCACAAACTTGAAAAGAATTGAGACAGTTACGAGAATAATCCTTG
TCTTATTTATAGGGTGAACATTATTTAAAAGAAAAATAAGCAAAGAAAAGATTTCCATACAAAAA
AAGTCATTCATATCATTTATCCTAAAGAGGAGAATATGTTTATAGTGCCTAAGGACAAAATAAAT
GAAGATCATTACTAGAATCCAAATTTGTCTCATTCGAGGCACGAACTTAGACTTTACAAAAATTG
GTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGTATCAATATCGTGTATCCTAAAGAGAAAACTAT
GTTTATGGTGCCTTATCA
Found at i:2322251 original size:158 final size:157
Alignment explanation
Indices: 2322089--2322568 Score: 397
Period size: 158 Copynumber: 3.1 Consensus size: 157
2322079 TACTAGAATC
* *
2322089 CATGTTTTTCGTATTTGAGGCATGAACTTAGACTTTTCAAAAATTGGTGGGAAGAAAGCCTTTCT
1 CATGTTTGTCTTATTTGAGGCATGAACTTAGACTTTTCAAAAATTGGTGGGAAGAAAGCCTTTCT
2322154 TGCGAAACCAAAGTATCAATATCGTGTATCCTAATGAGAAAACTATGTTTATGGTGCCTTATCCT
66 TGCGAAACCAAAGTATCAATAT-GTGTATCCTAATGAGAAAACTATGTTTATGGTGCCTTATCCT
*
2322219 GAAAAGAATAGAGATTAGTGTGAGTATT
130 GAAAAGAATAGAGATTAGTATGAGTATT
* * * *
2322247 CATGTTTGTCTTATTTAAGAGACA--AACTTTGA-TTCTATCAAAAA-TGGT-GGATGGAAAAGT
1 CATGTTTGTCTTATTT--GAGGCATGAACTTAGACTT-T-TCAAAAATTGGTGGGA-AG-AAAGC
* * * * * * * * *
2322307 TTTTCTTGCGACACC--A-TAGCAA-ATATG-ATTCT-AT---CAAA-TATGTTTATAGTCCCTA
60 CTTTCTTGCGAAACCAAAGTATCAATATGTGTATCCTAATGAGAAAACTATGTTTATGGTGCCTT
* * * *
2322362 ATCAC--AAAATGAAT-GAAGATCATTACT-AGAATC
125 ATC-CTGAAAA-GAATAG-AGATTAGTA-TGAGTATT
* * * * *
2322395 CAAGTTTGTCTCATTCGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCT
1 CATGTTTGTCTTATTTGAGGCATGAACTTAGACTTTTCAAAAATTGGTGGGAAGAAAGCCTTTCT
* * * ** * **
2322460 TGAGAAACGAATGCCTCAATATGATGTATCCTAAAGAGAAGTCTATGTTTATGGTGCCTTATCCT
66 TGCGAAACCAAAGTATCAATATG-TGTATCCTAATGAGAAAACTATGTTTATGGTGCCTTATCCT
2322525 GAAAAGAATAG-GTATTAGTATGAGTATT
130 GAAAAGAATAGAG-ATTAGTATGAGTATT
*
2322553 CACGTTTGTCTTATTT
1 CATGTTTGTCTTATTT
2322569 AAGAGACAAA
Statistics
Matches: 238, Mismatches: 53, Indels: 62
0.67 0.15 0.18
Matches are distributed among these distances:
146 5 0.02
147 26 0.11
148 56 0.24
149 10 0.04
150 3 0.01
151 2 0.01
152 4 0.02
153 8 0.03
154 3 0.01
155 2 0.01
156 5 0.02
157 10 0.04
158 70 0.29
159 29 0.12
160 5 0.02
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.34
Consensus pattern (157 bp):
CATGTTTGTCTTATTTGAGGCATGAACTTAGACTTTTCAAAAATTGGTGGGAAGAAAGCCTTTCT
TGCGAAACCAAAGTATCAATATGTGTATCCTAATGAGAAAACTATGTTTATGGTGCCTTATCCTG
AAAAGAATAGAGATTAGTATGAGTATT
Found at i:2322427 original size:306 final size:306
Alignment explanation
Indices: 2322061--2322622 Score: 914
Period size: 306 Copynumber: 1.8 Consensus size: 306
2322051 GCCTAAAGGA
* * * *
2322061 AAAATGAATGAAGATCATTACTAGAATCCATGTTTTTCGTATTTGAGGCATGAACTTAGACTTTT
1 AAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCGTATTCGAGGCATGAACTTAGACTTTA
* * * *
2322126 CAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGTATCAATATCG-TGTATCCTAATG
66 CAAAAATTGGTGGGAAAAAAGCCTTTCTTGAGAAACCAAAGCATCAATAT-GATGTATCCTAAAG
* *
2322190 AGAAAACTATGTTTATGGTGCCTTATCCTGAAAAGAATAGAG-ATTAGTGTGAGTATTCATGTTT
130 AGAAAACTATGTTTATGGTGCCTTATCCTGAAAAGAATAG-GTATTAGTATGAGTATTCACGTTT
** *
2322254 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGATGGAAAAGTTTTTCTTGCGAC
194 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAGGAAAAGTTTTTCTTGCGAC
2322319 ACCATAGCAAATATGATTCTATCAAATATGTTTATAGTCCCTAATCAC
259 ACCATAGCAAATATGATTCTATCAAATATGTTTATAGTCCCTAATCAC
2322367 AAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTC-TCATTCGAGGCATGAACTTAGACTTT
1 AAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCGT-ATTCGAGGCATGAACTTAGACTTT
* * *
2322431 ACAAAAATTGGTGGGAAAAAAGCCTTTCTTGAGAAACGAATGCCTCAATATGATGTATCCTAAAG
65 ACAAAAATTGGTGGGAAAAAAGCCTTTCTTGAGAAACCAAAGCATCAATATGATGTATCCTAAAG
**
2322496 AGAAGTCTATGTTTATGGTGCCTTATCCTGAAAAGAATAGGTATTAGTATGAGTATTCACGTTTG
130 AGAAAACTATGTTTATGGTGCCTTATCCTGAAAAGAATAGGTATTAGTATGAGTATTCACGTTTG
2322561 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAGGAAAAGTTTTTCTTGCG
195 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAGGAAAAGTTTTTCTTGCG
2322623 GCATCAAAGC
Statistics
Matches: 235, Mismatches: 18, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
305 3 0.01
306 232 0.99
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.33
Consensus pattern (306 bp):
AAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCGTATTCGAGGCATGAACTTAGACTTTA
CAAAAATTGGTGGGAAAAAAGCCTTTCTTGAGAAACCAAAGCATCAATATGATGTATCCTAAAGA
GAAAACTATGTTTATGGTGCCTTATCCTGAAAAGAATAGGTATTAGTATGAGTATTCACGTTTGT
CTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAGGAAAAGTTTTTCTTGCGACAC
CATAGCAAATATGATTCTATCAAATATGTTTATAGTCCCTAATCAC
Found at i:2323230 original size:474 final size:474
Alignment explanation
Indices: 2322343--2323805 Score: 2157
Period size: 474 Copynumber: 3.1 Consensus size: 474
2322333 GATTCTATCA
*
2322343 AATATGTTTATAGTCCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCA
1 AATATGTTTATAATCCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCA
* * *
2322408 TTCGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGAGAAACGAATG
66 TTCGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACGAAAG
* * *
2322473 CCTCAATATGATGTATCCTAAAGAGAAGTCTATGTTTATGGTGCCTTATCCTGAAAAGAATAGGT
131 CATCAATATGATGTATCCTAAAGAGAAGTCTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGG
* *
2322538 ATTAGTATGAGTATTCACGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGG
196 ATTAGTATGAGTATTTACGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGG
* *
2322603 AAGGAAAAGTTTTTCTTGCGGCATCAAAGCTTCAATGTCATGTATCCTAATGAAGGGAATTTGTT
261 AAGGAAAAGTTTTTCTTGCGACATCAAAGCTTCAATGTCATGTATCCTAATGAAGGGAATGTGTT
* * *
2322668 TTACTTTACATTATTGAAAAGAACTAAGAGAGTTACGAGAATCGATTCTTATCTTTTTTAAGGTA
326 TTGCTTCACATTATTGAAAAGAACTAAGAGAGTTACGAGAATCGATTCTTGTCTTTTTTAAGGTA
* *
2322733 TGAACATTGTTTTAAAGGAAAATAGGCAAAGAAAATATTCCAATGCAAAAGAAAATCATCCTTAC
391 TGAACATTGTTTTAAAGGAAAATAGGCAAAGAAAAGATTCCCATGCAAAAGAAAATCATCCTTAC
*
2322798 CACTCACCCTAACGAGGAG
456 CACTAACCCTAACGAGGAG
* * * * * *
2322817 AATATGTTTATAATGCCTAATCACAAAATGGAA-GAAGGTCATTGCTAGAATCTATGTTTGTATC
1 AATATGTTTATAATCCCTAATCACAAAAT-GAATGAAGATCATTACTAGAATCCAAGTTTGTCTC
* * * * *
2322881 ATTTGAGACACGAACTTAGACTGTA-TAAAATTCGGTGAGAAAAAAGCCTTTCTTGCGAAACGAA
65 ATTCGAGGCACGAACTTAGACTTTACAAAAATT-GGTGGGAAAAAAGCCTTTCTTGCGAAACGAA
* * * **
2322945 AGCATCAATATGATGTATGCTAAAGAGAAGACTATGTTTA-CGAACCTTATCCTGAAAAGAATGG
129 AGCATCAATATGATGTATCCTAAAGAGAAGTCTATGTTTATGGTGCCTTATCCTGAAAAGAATGG
* *** *
2323009 GGATTATTATGAGTATTTATAATTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAACGGT
194 GGATTAGTATGAGTATTTACGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGT
*
2323074 GGAAGGAAAAGTTTTTCTTGCGACATCAAAGCTTCAATGTCATGTATCCGAAT-AAGGGGAATGT
259 GGAAGGAAAAGTTTTTCTTGCGACATCAAAGCTTCAATGTCATGTATCCTAATGAA-GGGAATGT
* * * * *
2323138 GTTTTTGCTTCACATTCTTGAAACGAACTAAGATAATTACGAGAATCGATTCTTGTCTTATTTAA
323 G-TTTTGCTTCACATTATTGAAAAGAACTAAGAGAGTTACGAGAATCGATTCTTGTCTTTTTTAA
* * *
2323203 GTTATAAACATTATTTTAAAGGAAAATAGGCAAAGAAAAGATTCCCATGCAAAA-AAAATTCAT-
387 GGTATGAACATTGTTTTAAAGGAAAATAGGCAAAGAAAAGATTCCCATGCAAAAGAAAA-TCATC
**** * * *
2323266 CTATATTTTTAATCCTAATGTGGAG
451 CT-TACCACTAACCCTAACGAGGAG
* *
2323291 AATATGTTTATAGTCCCTAATCACAAAATGAATGAAGATCATTACTAAAATCCAAGTTTGTCTCA
1 AATATGTTTATAATCCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCA
2323356 TTCGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAAC-AAAT
66 TTCGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACGAAA-
* * *
2323420 GCATTAATATGATGTATCCTAAAGAGAAGTCTATGTCTATGGTGCCTTATCCTAAAAAGAATGGG
130 GCATCAATATGATGTATCCTAAAGAGAAGTCTATGTTTATGGTGCCTTATCCTGAAAAGAATGGG
* * * *
2323485 GATTAGTATGAGTATTTACGTTTTTCTTATTTAAGAGAAAAACTTTGATTCTATCAAAAATGGTA
195 GATTAGTATGAGTATTTACGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTG
* * *
2323550 GAAGAAAAAGTTTTTGTTACGACATCAAAGCTTCAATGTCATGTATCCTAATGAAGGGAATGTGT
260 GAAGGAAAAGTTTTTCTTGCGACATCAAAGCTTCAATGTCATGTATCCTAATGAAGGGAATGTGT
* *
2323615 TTTGCTTCACATTATTGAAAAGAACTGAGAGAGTTATGAGAATCGATTCTTGTCTTTTTTAAGGT
325 TTTGCTTCACATTATTGAAAAGAACTAAGAGAGTTACGAGAATCGATTCTTGTCTTTTTTAAGGT
* *
2323680 ATGAACATTGTGTTAAAGGAAAATAGGCAAAGAAAAGATTCCCATGCAAACGAAAATCATCCTTA
390 ATGAACATTGTTTTAAAGGAAAATAGGCAAAGAAAAGATTCCCATGCAAAAGAAAATCATCCTTA
*
2323745 CCACTTACCCTAACGAGGAG
455 CCACTAACCCTAACGAGGAG
* *
2323765 AATATGTTTATAATGCCTAATCAAAAAATGAATGAAGATCA
1 AATATGTTTATAATCCCTAATCACAAAATGAATGAAGATCA
2323806 AAACCTTTCT
Statistics
Matches: 865, Mismatches: 111, Indels: 26
0.86 0.11 0.03
Matches are distributed among these distances:
472 2 0.00
473 154 0.18
474 558 0.65
475 149 0.17
476 2 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (474 bp):
AATATGTTTATAATCCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCA
TTCGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACGAAAG
CATCAATATGATGTATCCTAAAGAGAAGTCTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGG
ATTAGTATGAGTATTTACGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGG
AAGGAAAAGTTTTTCTTGCGACATCAAAGCTTCAATGTCATGTATCCTAATGAAGGGAATGTGTT
TTGCTTCACATTATTGAAAAGAACTAAGAGAGTTACGAGAATCGATTCTTGTCTTTTTTAAGGTA
TGAACATTGTTTTAAAGGAAAATAGGCAAAGAAAAGATTCCCATGCAAAAGAAAATCATCCTTAC
CACTAACCCTAACGAGGAG
Found at i:2324173 original size:408 final size:407
Alignment explanation
Indices: 2323396--2324213 Score: 958
Period size: 408 Copynumber: 2.0 Consensus size: 407
2323386 TTGGTGGGAA
* * *
2323396 AAAAGCCTTTCTTGCGAAACAAATGCATTAATATGATGTATCCTAAAGAGAAGTCTATGTCTATG
1 AAAAGCCTTTCTTGCGAAACAAATGCATCAATATGATGTATCCTAAAGAGAAGACTATGTCTACG
** * *
2323461 GTGCCTTATCCTAAAAAGAATGGGGATTAGTATGAGTATTTACGTTTTTCTTATTTAAGAGAAAA
66 GAACCTTATCCTAAAAAGAATGGAGATTAGTATGAGTATTTACGTTTGTCTTATTTAAGAGAAAA
* ** * * * * *
2323526 ACTTTGATTCTATCAAAAATGGTAGAAGAAAAAGTTTTTGTTACGACATCAAAGCTTCAATGTCA
131 ACTTTGACTCTATCAAAAAAAGCAGAAGAAAAACTTTTTCTTACGACACCAAAGCATCAATGTCA
* * * *
2323591 TGTATCCTAATGAAGGGAATGTGTTTTGCTTCACATTATTGAAAAGAACTGAGAGAGTTATGAGA
196 CGTATCCTAATGAAGGGAATGTCTTTGGCTTCACATAATTGAAAAGAACTGAGAGAGTTATGAGA
* * * *
2323656 ATCGATTCTTGTCTTTTTTAAGGTATGAACATTGTGTTAAAGGAAAATAGGCAAAGAAAAGATTC
261 ATCGAATCGTGTCTTTTTTAAGGTATGAACATTATATTAAA-GAAAATAGGCAAAGAAAAGATTC
* * *
2323721 CCATGCAAACGAAAATCATCCTTACCACTTACCCTAACGAGGAGAATATGTTTATAATGCCTAAT
325 CCATGCAAACAAAAATCAT-CTAACCACTTACCCTAACGAGGAGAATACGTTTATAATGCCTAAT
2323786 CAAAAAATGAATGAAGATC
389 CAAAAAATGAATGAAGATC
* *
2323805 AAAA-CCTTTCTTGCGAAACGAAA-GCATCAATATGATGTATGCTAAAGAGAAGACTATGTTTAC
1 AAAAGCCTTTCTTGCGAAAC-AAATGCATCAATATGATGTATCCTAAAGAGAAGACTATGTCTAC
* * * *
2323868 GGAACCTTATCCTGAAAAGAATGGAGATTAGTGTGAGTATTTATGTTTGTCTTATTTAAGAGACA
65 GGAACCTTATCCTAAAAAGAATGGAGATTAGTATGAGTATTTACGTTTGTCTTATTTAAGAGAAA
* * **
2323933 AACTTTGACTCTATCAAAAAAAGCGGATAGAAAATCTTTTTCTTGTGACACCAAAGCATCAATGT
130 AACTTTGACTCTATCAAAAAAAGCAGA-AGAAAAACTTTTTCTTACGACACCAAAGCATCAATGT
* * * * *
2323998 CACGTTTCCTAATG-GGGGAATGTCTTTGGCTTCCCA-AACTTTAAAAG-ATTG-GAGACTGTTA
194 CACGTATCCTAATGAAGGGAATGTCTTTGGCTTCACATAA-TTGAAAAGAACTGAGAGA--GTTA
* *
2324059 TGAGAGTC-AATCAGTGT-TTTATTTAAGGGT-TGAACTTTAATATTACAA-AAAATAAGGCAAA
256 TGAGAATCGAATC-GTGTCTTT-TTTAA-GGTATGAACATT-ATATTA-AAGAAAAT-AGGCAAA
* * * * * *
2324120 GAAAGGTTTTCCATGCAAA-AAAAATCAT-TAACATCATTTATCCTAATGAGGAGAATACGTTTA
315 GAAAAGATTCCCATGCAAACAAAAATCATCTAAC--CACTTACCCTAACGAGGAGAATACGTTTA
* *
2324183 TAGTGCCTAATCGAAAAATGAATGAAGATC
378 TAATGCCTAATCAAAAAATGAATGAAGATC
2324213 A
1 A
2324214 TTATAAGAAT
Statistics
Matches: 345, Mismatches: 51, Indels: 27
0.82 0.12 0.06
Matches are distributed among these distances:
406 7 0.02
407 10 0.03
408 247 0.72
409 79 0.23
410 2 0.01
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (407 bp):
AAAAGCCTTTCTTGCGAAACAAATGCATCAATATGATGTATCCTAAAGAGAAGACTATGTCTACG
GAACCTTATCCTAAAAAGAATGGAGATTAGTATGAGTATTTACGTTTGTCTTATTTAAGAGAAAA
ACTTTGACTCTATCAAAAAAAGCAGAAGAAAAACTTTTTCTTACGACACCAAAGCATCAATGTCA
CGTATCCTAATGAAGGGAATGTCTTTGGCTTCACATAATTGAAAAGAACTGAGAGAGTTATGAGA
ATCGAATCGTGTCTTTTTTAAGGTATGAACATTATATTAAAGAAAATAGGCAAAGAAAAGATTCC
CATGCAAACAAAAATCATCTAACCACTTACCCTAACGAGGAGAATACGTTTATAATGCCTAATCA
AAAAATGAATGAAGATC
Found at i:2324646 original size:880 final size:882
Alignment explanation
Indices: 2322922--2324685 Score: 2115
Period size: 880 Copynumber: 2.0 Consensus size: 882
2322912 TCGGTGAGAA
2322922 AAAAGCCTTTCTTGCGAAACGAAAGCATCAATATGATGTATGCTAAAGAGAAGACTATGTTTACG
1 AAAAGCCTTTCTTGCGAAACGAAAGCATCAATATGATGTATGCTAAAGAGAAGACTATGTTTACG
* * *
2322987 AACCTTATCCTGAAAAGAATGGGGATTATTATGAGTATTTATAATTGTCTTATTTAAGAGGCAAA
66 AACCTTATCCTGAAAAGAATGGAGATTAGTATGAGTATTTATAATTGTCTTATTTAAGAGACAAA
* ** * * * * *
2323052 CTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACATCAAAGCTTCAATGTCAT
131 CTTTGACTCTATCAAAAAAAGCGGAAGGAAAACTTTTTCTTGCGACACCAAAGCATCAATGTCAC
* * ** *
2323117 GTATCCGAATAAGGGGAATGTGTTTTTGCTTCACATTCTTGAAACGAACTAAGATAATTACGAGA
196 GTATCCGAATAAGGGGAATGTGCTTTGGCTTCACAAACTTGAAAAGAACTAAGATAATTACGAGA
* * * *
2323182 ATCGATTCTTGTCTTATTTAAGTTATAAACATTATTTTAAAGGAAAATAGGCAAAGAAAAGATTC
261 ATCGAATCGTGTCTTATTTAAGGTATAAACATTATATTAAA-GAAAATAGGCAAAGAAAAGATTC
* * * *
2323247 CCATGCAAAAAAAATTCATCTATATTTTTAATCCTAATGTGGAGAATATGTTTATAGTCCCTAAT
325 CCATGCAAAAAAAATTCATCTACATATTTAATCCTAATGAGGAGAATACGTTTATAGTCCCTAAT
*
2323312 CACAAAATGAATGAAGATCATTACTAAAATCCAAGTTTGTCTCATTCGAGGCACGAACTTAGACT
390 CACAAAATGAATGAAGATCATTACTAAAATCCAAGTTTGTCTCATTCAAGGCACGAACTTAGACT
** *** * *
2323377 TTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACAAATGCATTAATATGATGTATCCTAA
455 TTACAAAAATAAGCAAGAAAAAAGCCTTTCTTGCAAAACAAATGCATCAATATGATGTATCCTAA
* ** *
2323442 AGAGAAGTCTATGTCTATGGTGCCTTATCCTAAAAAGAATGGGGATTAGTATGAGTATTTACGTT
520 AGAGAAGACTATGTCTATGGTGCCTTATCCTAAAAAGAATGAAGATTAGTATGAGTATTCACGTT
* * * * *
2323507 TTTCTTATTTAAGAGAAAAACTTTGATTCTATCAAAAATGGTAGAAGAAAAAGTTTTTGTTACGA
585 TATCTTATTTAAAAGAAAAACTTTGACTCTATCAAAAACGGTAGAAGAAAAAGTTTTTCTTACGA
* * * *
2323572 CATCAAAGCTTCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGCTTCACATTATTGAAAAG
650 CACCAAAGCTTCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTGCTTCACAATATCGAAAAG
* * * *
2323637 AACTGAGAGAGTTATGAGAATCGATTCTTGTCTTTTTTAAGGTATGAACATTGTGTTAAAGGAAA
715 AACTGAGAGAGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACATTGTGTTAAAGGAAA
** * **
2323702 ATAGGCAAAGAAAAGATTCCCATGCAAACGAAAATCATCCTTACCACTTACCCTAACGAGGAGAA
780 ATAGGCAAAGAAAAGATTCCCAAACAAACAAAAATCATCAATACCACTTACCCTAACGAGGAGAA
*
2323767 TATGTTTATAATGCCTAATCAAAAAATGAATGAAGATC
845 TAGGTTTATAATGCCTAATCAAAAAATGAATGAAGATC
2323805 AAAA-CCTTTCTTGCGAAACGAAAGCATCAATATGATGTATGCTAAAGAGAAGACTATGTTTACG
1 AAAAGCCTTTCTTGCGAAACGAAAGCATCAATATGATGTATGCTAAAGAGAAGACTATGTTTAC-
* **
2323869 GAACCTTATCCTGAAAAGAATGGAGATTAGTGTGAGTATTTATGTTTGTCTTATTTAAGAGACAA
65 GAACCTTATCCTGAAAAGAATGGAGATTAGTATGAGTATTTATAATTGTCTTATTTAAGAGACAA
*
2323934 ACTTTGACTCTATCAAAAAAAGCGGATA-GAAAATCTTTTTCTTGTGACACCAAAGCATCAATGT
130 ACTTTGACTCTATCAAAAAAAGCGGA-AGGAAAA-CTTTTTCTTGCGACACCAAAGCATCAATGT
* * * * * * * *
2323998 CACGTTTCCTAAT-GGGGGAATGT-CTTTGGCTTCCCAAACTTTAAAAG-ATTGGAGACT-GTTA
193 CACGTATCCGAATAAGGGGAATGTGCTTTGGCTTCACAAACTTGAAAAGAACT-AAGA-TAATTA
* * * * *
2324059 TGAGAGTC-AATCAGTGTTTTATTTAAGGGT-TGAACTTTAATATTACAA-AAAATAAGGCAAAG
256 CGAGAATCGAATC-GTGTCTTATTTAA-GGTATAAACATT-ATATTA-AAGAAAAT-AGGCAAAG
* * *
2324121 AAAGGTTTTCCATGCAAAAAAAA-TCAT-TAACATCATTT-ATCCTAATGAGGAGAATACGTTTA
316 AAAAGATTCCCATGCAAAAAAAATTCATCT-ACAT-ATTTAATCCTAATGAGGAGAATACGTTTA
* * *
2324183 TAGTGCCTAATCGA-AAAATGAATGAAGATCATTA-TAAGAATCCATG-TTGTCAT-ATTTAAGG
379 TAGTCCCTAATC-ACAAAATGAATGAAGATCATTACTAA-AATCCAAGTTTGTC-TCATTCAAGG
* * * *
2324244 CACGAACTTAGACTTTA-AAAAATAAGCAAGAAGAAATCCTTTCTTGTAAAACCAAA-GTATCAA
441 CACGAACTTAGACTTTACAAAAATAAGCAAGAAAAAAGCCTTTCTTGCAAAA-CAAATGCATCAA
* * * *
2324307 TATCG-TGTATCC-AAATGATAAGACTATGTTTATGGTGCCTTATCCTGAAAGGAATGAAGATTA
505 TAT-GATGTATCCTAAA-GAGAAGACTATGTCTATGGTGCCTTATCCTAAAAAGAATGAAGATTA
* * * *
2324370 GTATGAGTATTCATGTTTATCTTATTTAAAAGACAAACTTTGACTCTATCAAAAACGGTGGAAGG
568 GTATGAGTATTCACGTTTATCTTATTTAAAAGAAAAACTTTGACTCTATCAAAAACGGTAGAAGA
* * * *
2324435 GAAAGTTTTTCTTGCGGCACCAAAG-TATCAATTTCATGTATCCTAATGAAAGGAATGTGTTTTG
633 AAAAGTTTTTCTTACGACACCAAAGCT-TCAATGTCATGTATCCTAATGAAAGGAATGTGTTTT-
* * * *
2324499 GC-TCCCAATCTCGTAAAGAA-TG-GAGATTGTTACGAGAATTGATGCTTGTCTTATTTAAGGGA
696 GCTTCACAATATCGAAAAGAACTGAGAGA--GTTACGAGAATCGATGCTTGTCTTATTTAAGGGA
* * ** *
2324561 TGAACTTTGAT-TTTAAGGAAAATAGGGCAAAGAAAAGATTTTCAAACAAA-AAAAATCATTAAT
759 TGAACATTG-TGTTAAAGGAAAATA-GGCAAAGAAAAGATTCCCAAACAAACAAAAATCATCAAT
* * * * * **
2324624 ATCATTTATCCTAA-GAAGGAGAATGGGTTTATAGTGCCTAATCCCAAAATGAATGAAGATC
822 ACCACTTACCCTAACG-AGGAGAATAGGTTTATAATGCCTAATCAAAAAATGAATGAAGATC
2324685 A
1 A
2324686 TTACTAGAAT
Statistics
Matches: 746, Mismatches: 110, Indels: 53
0.82 0.12 0.06
Matches are distributed among these distances:
878 4 0.01
879 7 0.01
880 313 0.42
881 66 0.09
882 178 0.24
883 139 0.19
884 39 0.05
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (882 bp):
AAAAGCCTTTCTTGCGAAACGAAAGCATCAATATGATGTATGCTAAAGAGAAGACTATGTTTACG
AACCTTATCCTGAAAAGAATGGAGATTAGTATGAGTATTTATAATTGTCTTATTTAAGAGACAAA
CTTTGACTCTATCAAAAAAAGCGGAAGGAAAACTTTTTCTTGCGACACCAAAGCATCAATGTCAC
GTATCCGAATAAGGGGAATGTGCTTTGGCTTCACAAACTTGAAAAGAACTAAGATAATTACGAGA
ATCGAATCGTGTCTTATTTAAGGTATAAACATTATATTAAAGAAAATAGGCAAAGAAAAGATTCC
CATGCAAAAAAAATTCATCTACATATTTAATCCTAATGAGGAGAATACGTTTATAGTCCCTAATC
ACAAAATGAATGAAGATCATTACTAAAATCCAAGTTTGTCTCATTCAAGGCACGAACTTAGACTT
TACAAAAATAAGCAAGAAAAAAGCCTTTCTTGCAAAACAAATGCATCAATATGATGTATCCTAAA
GAGAAGACTATGTCTATGGTGCCTTATCCTAAAAAGAATGAAGATTAGTATGAGTATTCACGTTT
ATCTTATTTAAAAGAAAAACTTTGACTCTATCAAAAACGGTAGAAGAAAAAGTTTTTCTTACGAC
ACCAAAGCTTCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTGCTTCACAATATCGAAAAGA
ACTGAGAGAGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACATTGTGTTAAAGGAAAA
TAGGCAAAGAAAAGATTCCCAAACAAACAAAAATCATCAATACCACTTACCCTAACGAGGAGAAT
AGGTTTATAATGCCTAATCAAAAAATGAATGAAGATC
Found at i:2324905 original size:473 final size:472
Alignment explanation
Indices: 2323805--2327459 Score: 3856
Period size: 473 Copynumber: 7.7 Consensus size: 472
2323795 AATGAAGATC
* * * * *
2323805 AAAA-CCTTTCTTGCGAAACGAAAGCATCAATATGATGTATGCTAAAGAGAAGACTATGTTTACG
1 AAAAGCCTTTCTTGCAAAACGAAAGTATCAATATGATGTATCCTAATGAGAAGACTATGTTTATG
** * *
2323869 GAACCTTATCCTGAAAAGAATG-GAGATTAGTGTGAGTATTTATGTTTGTCTTATTTAAGAGACA
66 GTGCCTTATCCTGAAAAGAATGAG-GATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACA
* ** * * *
2323933 AACTTTGACTCTATCAAAAAAAGCGGATA-GAAAATCTTTTTCTTGTGACACCAAAGCATCAATG
130 AACTTTGATTCTATCAAAAATGGTGGA-AGGAAAA-GTTTTTCTTGCGACACCAAAGCATCAATG
* * * * * * *
2323997 TCACGTTTCCTAATG-GGGGAATGT-CTTTGGCTTCCCAAACTTTAAAAGATTGGAGACTGTTAT
193 TCATGTTTCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTGT-AAAGAATGGAGACTGTTAC
* * * * * * *
2324060 GAGAGTC-AATCAGTGTTTTATTTAAGGGTTGAACTTTAATATTACA-AAAAATAAGGCAAAGAA
257 GAGAATCGATTC-TTGTCTTATTTAAGGGATGAACTTTGATTTTA-AGAAAAAT-AGGCAAAGAA
* * * *
2324123 AGGTTTTCCATGCAAAAAAAATCATTAACATCATTTATCCTAATG-AGGAGAATACGTTTATAGT
319 AAGATTTCCATGCAAAAAAAATCATTAATATCATTTATCCTAA-GAAGGAGAATAGGTTTATAGT
*
2324187 GCCTAATCGA-AAAATGAATGAAGATCATTA-TAAGAATCCATG-TTGTC-ATATTTAAGGCACG
383 GCCTAATC-ACAAAATGAATGAAGATCATTACT-AGAATCCATGTTTGTCTA-ATTTGAGGCACG
* * ***
2324248 AACTTAGACTTTA-AAAAATAAGCAAGAA
445 AACTTAGACTTTACAAATAT-GGTGGGAA
* * * * * *
2324276 GAAATCCTTTCTTGTAAAACCAAAGTATCAATATCG-TGTATCCAAATGATAAGACTATGTTTAT
1 AAAAGCCTTTCTTGCAAAACGAAAGTATCAATAT-GATGTATCCTAATGAGAAGACTATGTTTAT
* * * *
2324340 GGTGCCTTATCCTGAAAGGAATGAAGATTAGTATGAGTATTCATGTTTATCTTATTTAAAAGACA
65 GGTGCCTTATCCTGAAAAGAATGAGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACA
* * * * * *
2324405 AACTTTGACTCTATCAAAAACGGTGGAAGGGAAAGTTTTTCTTGCGGCACCAAAGTATCAATTTC
130 AACTTTGATTCTATCAAAAATGGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATGTC
* * *
2324470 ATGTATCCTAATGAAAGGAATGTGTTTTGGC-TCCCAATCTCGTAAAGAATGGAGATTGTTACGA
195 ATGTTTCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCT-GTAAAGAATGGAGACTGTTACGA
* * *
2324534 GAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGA
259 GAATCGATTCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATA-GGCAAAGAAAAGA
* ** *
2324599 TTTTCAAACAAAAAAAATCATTAATATCATTTATCCTAAGAAGGAGAATGGGTTTATAGTGCCTA
323 TTTCCATGCAAAAAAAATCATTAATATCATTTATCCTAAGAAGGAGAATAGGTTTATAGTGCCTA
* * *
2324664 ATCCCAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTAATTTGAGGCATGAACTTAGA
388 ATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTAATTTGAGGCACGAACTTAGA
*
2324729 CTTTACAAATATGGTAGGAA
453 CTTTACAAATATGGTGGGAA
* * *
2324749 AAAAGCCTTTCTTGCAAAACGAAATTATCAATATGATCTAACCTAATGAGAAGACTATGTTTATG
1 AAAAGCCTTTCTTGCAAAACGAAAGTATCAATATGATGTATCCTAATGAGAAGACTATGTTTATG
* * *
2324814 TTGCCTTATCCTGAAAAGAATGAGGCTTAGTATGAGTATTCATGCTTGTCTTATTTAAGAGACAA
66 GTGCCTTATCCTGAAAAGAATGAGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* * * *
2324879 ACTTTGATTCTATCAAAAATGGTGGAAGGAAAAGTTTTTCCTGCAACATCAAAGTATCAATGTCA
131 ACTTTGATTCTATCAAAAATGGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATGTCA
* * * * * * **
2324944 TGTTTCCTAATGAAGGG-ATGGTCTTTTAGCTTCACAATCTTGAAAATAACT-AAGACACTTACG
196 TGTTTCCTAATGAAGGGAAT-GTGTTTTGGCTTCCCAATC-TGTAAAGAA-TGGAGACTGTTACG
** ** * *
2325007 AGAATTAATTCTTGTCTTATTTAAGGTTTGAACATT-ATTTTAAAGGAAAATAGGCAAAGAAAAG
258 AGAATCGATTCTTGTCTTATTTAAGGGATGAACTTTGATTTT-AAGAAAAATAGGCAAAGAAAAG
* * * * *
2325071 ATTCCCATGC-AAAAGAATCCTCAATATCATTTATCCTATCCTA-ATCAGGAGAATAAGTTTATA
322 ATTTCCATGCAAAAAAAATCATTAATATCATTTATCCTA----AGA--AGGAGAATAGGTTTATA
* *
2325134 GTGCCTAATCACAAAATGAATGAAGATCATGACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
381 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTAATTTGAGGCACGA
*
2325199 ACTTAGACTTTACAAAATTTGGTGGGAA
446 ACTTAGACTTTAC-AAATATGGTGGGAA
* * ** * * * **
2325227 AAAA-ACTTTCTTGCCAAA-GTAAAAAATCAATATGATTTATCATAAAGAGAAGACTGCGTTTAT
1 AAAAGCCTTTCTTGCAAAACG-AAAGTATCAATATGATGTATCCTAATGAGAAGACTATGTTTAT
* *
2325290 GGTGCCTTATCCTGAAAAGAAT-AGGGATTAGTATGAGTATTTATGTTCGTCTTATTTAAGAGAC
65 GGTGCCTTATCCTGAAAAGAATGA-GGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAC
* * ** * * * * *
2325354 AAATTTTGATTCTATTAAAAAAAGTGGAAAGAAAATTTTTTTCTTGTGGCACCAAAGCATCGATG
129 AAACTTTGATTCTATCAAAAATGGTGGAAGGAAAA-GTTTTTCTTGCGACACCAAAGCATCAATG
* * * * *
2325419 TCATGTTTCCTAAT-AAGGGAATGTATTTTGGCTTCCCAAACTTTAAAAGATTGGAGACTGTTAT
193 TCATGTTTCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTGT-AAAGAATGGAGACTGTTAC
* *
2325483 GAGAATCGA-TCATTGTCTTATTTAAGGGATAAACTTTGATTTTATGAAAAATAGGGCAAAGAAA
257 GAGAATCGATTC-TTGTCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATA-GGCAAAGAAA
* * * * * * ** * *
2325547 GGTTTTCCACGCAAAAAAAATCATTAACATCGTTTCTCCTAATCAGGAGAATATGTTTACAGTGC
320 AGATTTCCATGCAAAAAAAATCATTAATATCATTTATCCTAAGAAGGAGAATAGGTTTATAGTGC
* * * * * *
2325612 CGAATTGA-AAAATGAATGAAGATCATTACAAGAATCCATGTTCGTC-ATATTTAAGGCAGGAAC
385 CTAA-TCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTA-ATTTGAGGCACGAAC
* *
2325675 TTAGACTTTA-AAAAATTAGTGGGAA
448 TTAGACTTTACAAATA-TGGTGGGAA
* * * *
2325700 GAAATCCTTTCTTACGAAAAC-AAAGTATCAATATCG-TGTATCCAAATGAGAAGACTATGTTTA
1 AAAAGCCTTTCTTGC-AAAACGAAAGTATCAATAT-GATGTATCCTAATGAGAAGACTATGTTTA
* * *
2325763 TTGTGCCTTAT-CTCGAAAAGAAAGAAGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGA
64 TGGTGCCTTATCCT-GAAAAGAATGAGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGA
* ** * * *
2325827 CAAACTTTGATTCTATCAAAAACGGTAAAAGGAAAAGTTTTTCTTGCGACACCAAAGCCTAAATT
128 CAAACTTTGATTCTATCAAAAATGGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATG
* * * * *
2325892 TCGTGTATCCTGATGGAGGGAATGTGTTTTGGC-TCCCAATCTCGTAAAGAATGGAGATTGTTAC
193 TCATGTTTCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCT-GTAAAGAATGGAGACTGTTAC
* *
2325956 GAGAATCGATGCTTGTCTTATTTTAGGGATGAACTTTGATTTTAAG-AAAATAAGGCAAAGAAAA
257 GAGAATCGATTCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAAT-AGGCAAAGAAAA
** * *
2326020 GATTTCCAAACAAAAAAAAATCATTAATATCATTTATCCTAAGAAGGAGAATGGGTTTATAGTAC
321 GATTTCCATGC-AAAAAAAATCATTAATATCATTTATCCTAAGAAGGAGAATAGGTTTATAGTGC
* * *
2326085 CTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTAATTTGAGGTATGAACTT
385 CTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTAATTTGAGGCACGAACTT
2326150 AGACTTTACAAAATATGGTGGGAA
450 AGACTTTAC-AAATATGGTGGGAA
* ** * * * ** *
2326174 AAAAGCCTTTCTTGTAAAATAAAAGCATCAATTTCATCAAACCTAATGAGAAGACTATGTTTATG
1 AAAAGCCTTTCTTGCAAAACGAAAGTATCAATATGATGTATCCTAATGAGAAGACTATGTTTATG
* * * * *
2326239 TTGCCTTATCCTGAAAAGAATGAGGCTTAATATGAGTCTTCATGCTTGTCTTATTTAAGAGACAA
66 GTGCCTTATCCTGAAAAGAATGAGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* * *
2326304 ACTTTGATTCTATCAAAAATGGTGGAAGGAAAAGTTTTTAC-TGCAACATCAAAGCATCAACGTC
131 ACTTTGATTCTATCAAAAATGGTGGAAGGAAAAGTTTTT-CTTGCGACACCAAAGCATCAATGTC
* * * * * * **
2326368 ATGTCTCCTAATGAAGGGATTGTCTTTTAGCTTCACAATCT-TGAAACGAACT-AAGACACTTAC
195 ATGTTTCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTGT-AAA-GAA-TGGAGACTGTTAC
* * * *
2326431 AAGAATTGATTCTTGTCTTATTTAAGGTATGAACATTG-TTTTAAAGAAAAATAGGCAAAGAAAA
257 GAGAATCGATTCTTGTCTTATTTAAGGGATGAACTTTGATTTT-AAGAAAAATAGGCAAAGAAAA
* * * ** * * * *
2326495 GATTCCCATGC-AAAAGAATCCTCCATATCAATTATCCTAATG-AGGAGAATAAGTTTACAATGC
321 GATTTCCATGCAAAAAAAATCATTAATATCATTTATCCTAA-GAAGGAGAATAGGTTTATAGTGC
* * **
2326558 CTAATCACAAAATGAATGAAGACCATTACTAGAATCCATATTTGTCTTTTTTGAGGCACGAACTT
385 CTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTAATTTGAGGCACGAACTT
* * *
2326623 AAACTTTACAAAATTTGATGGG-A
450 AGACTTTAC-AAATATGGTGGGAA
* * * * * * *
2326646 AAAAGACTTTCTTGCGAAA-GCAAAATATCAATATGACGTATCATAAAGAGAAGACTGTGTTTAT
1 AAAAGCCTTTCTTGCAAAACG-AAAGTATCAATATGATGTATCCTAATGAGAAGACTATGTTTAT
* * * * *
2326710 GGTGCCTTATCCTAAAAAGAATGGGGATTAGTATGAGTATTTATGTTTGTCTTACTTATGAGACA
65 GGTGCCTTATCCTGAAAAGAATGAGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACA
* * * * *** * *
2326775 AACTTTGATTCTATAAAAAATAGTTGAAAGAAATCCTTTTCTCGTGACACCAAAGCATCAATGTC
130 AACTTTGATTCTATCAAAAATGGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATGTC
* * * *
2326840 ATGTTTCCTAATG-AGGGAATGTGTTTTGGCTTCCCAAACTTTAAAAGATTTGGAGATTGTTACG
195 ATGTTTCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTGT-AAAGA-ATGGAGACTGTTACG
* * ** * *
2326904 AGAATCGATCCTTGCCTTATTTATCGGATAAACTTTGATTTTACGAAAAATAGGGCAAAGAAAAG
258 AGAATCGATTCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATA-GGCAAAGAAAAG
* *
2326969 ATTTCCATGCAAAAAAAATCATTAATATCATTTATCCTGATAAGGAGAAT-GTGTTTATTATAGT
322 ATTTCCATGCAAAAAAAATCATTAATATCATTTATCCTAAGAAGGAGAATAG-G--T-TTATAGT
* * * * * *
2327033 GCCTAATCAAAAAATGAATGAAGATAATAACAAGAATCCATGTTTGTCGAATTTGAGGCACAAAC
383 GCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTAATTTGAGGCACGAAC
* * * *
2327098 ATAGACTTTACAAAAATTTGCGGGAA
448 TTAGACTTTACAAATA-TGGTGGGAA
* * *
2327124 GAAAGCCTTTCTTGCAAAACCAAAGTATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
1 AAAAGCCTTTCTTGCAAAACGAAAGTATCAATATGATGTATCCTAATGAGAAGACTATGTTTATG
* * * *
2327189 TTGCCTTATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGCTTGTCTTATTTAAGAGACAA
66 GTGCCTTATCCTGAAAAGAATGAGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* * * * *
2327254 ACTTTGATGCTATCAAAAATGGTGGAAGTAAAAGTTTTTCCTACGACATCAAAGCATCAATGTCA
131 ACTTTGATTCTATCAAAAATGGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATGTCA
* * * * * * * **
2327319 TGTCTCCTAATGAAGGGATTGTTTTTTAGCTTCACAATCTTGAAAAGAACT-AAGACACTTACGA
196 TGTTTCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATC-TGTAAAGAA-TGGAGACTGTTACGA
* * * *
2327383 GAATTGATTCTTGTCTTATTTAAGGTATGAACATTG-TTTTAAAAGAAAATAGGCAAAGAAAAGA
259 GAATCGATTCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGA-AAAATAGGCAAAGAAAAGA
*
2327447 TTCCCATG-AAAAA
323 TTTCCATGCAAAAA
2327460 TGAAAGCTTA
Statistics
Matches: 2626, Mismatches: 469, Indels: 173
0.80 0.14 0.05
Matches are distributed among these distances:
471 70 0.03
472 572 0.22
473 621 0.24
474 516 0.20
475 91 0.03
476 22 0.01
477 388 0.15
478 296 0.11
479 49 0.02
480 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (472 bp):
AAAAGCCTTTCTTGCAAAACGAAAGTATCAATATGATGTATCCTAATGAGAAGACTATGTTTATG
GTGCCTTATCCTGAAAAGAATGAGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
ACTTTGATTCTATCAAAAATGGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATGTCA
TGTTTCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTGTAAAGAATGGAGACTGTTACGAGA
ATCGATTCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGCAAAGAAAAGATTT
CCATGCAAAAAAAATCATTAATATCATTTATCCTAAGAAGGAGAATAGGTTTATAGTGCCTAATC
ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTAATTTGAGGCACGAACTTAGACTT
TACAAATATGGTGGGAA
Found at i:2327261 original size:950 final size:947
Alignment explanation
Indices: 2323805--2327459 Score: 3979
Period size: 950 Copynumber: 3.9 Consensus size: 947
2323795 AATGAAGATC
* * *
2323805 AAAA-CCTTTCTTGCG-AAACGAAAGCATCAATATGATGTATGC-TAAAGAGAAGACTATGTTTA
1 AAAAGCCTTTCTTGCGAAAACGAAAGTATCAATATGACGTATCCATAAAGAGAAGACTATGTTTA
* ** * * *
2323867 CGGAACCTTATCCTGAAAAGAATGGAGATTAGTGTGAGTATTTATGTTTGTCTTATTTAAGAGAC
66 TGGTGCCTTATCCTGAAAAGAATGAAGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAC
* * * *
2323932 AAACTTTGACTCTATCAAAAAAAGCGGATAGAAAATCTTTTTCTTGTGACACCAAAGCATCAATG
131 AAACTTTGATTCTAT-AAAAAAAGTGGAAAG-AAATCTTTTTCTCGTGACACCAAAGCATCAATG
* * * *
2323997 TCACGTTTCCTAATGGGGGAATGT-CTTTGGCTTCCCAAACTTTAAAAGATTGGAGACTGTTATG
194 TCATGTTTCCTAATGAGGGAATGTGTTTTGGCTTCCCAAACTTTAAAAGATTGGAGACTGTTACG
* ** * * * * * *
2324061 AGAGTCAATCAGTGTTTTATTTAAGGGTTGAACTTTAATATTACA-AAAAATAAGGCAAAGAAAG
259 AGAATCAATCCTTGTCTTATTTATGGGATGAACTTTGATTTTA-AGAAAAATAAGGCAAAGAAAA
* * *
2324125 GTTTTCCATGCAAAAAAAATCATTAACATCATTTATCCTAATGAGGAGAATACGTTTATAGTGCC
323 GATTTCCATGCAAAAAAAATCATTAATATCATTTATCCTAATAAGGAGAATA-GTTTATAGTGCC
* * *
2324190 TAATCGAAAAATGAATGAAGATCATTATAAGAATCCATG-TTGTC-ATATTTAAGGCACGAACTT
387 TAATCAAAAAATGAATGAAGATCATTACAAGAATCCATGTTTGTCTA-ATTTGAGGCACGAACTT
* ** ** * * *
2324253 AGACTTTAAAAAATAAGCAAGAAGAAATCCTTTCTTGTAAAACCAAAGTATCAATATCGTGTATC
451 AGACTTTACAAAATTTGCGGGAAGAAAGCCTTTCTTGCAAAACCAAAGTATCAATATCATGTATC
* * * *
2324318 CAAATGATAAGACTATGTTTATGGTGCCTTATCCTGAAAGGAATGAAGATTAGTATGAGTATTCA
516 CTAATGAGAAGACTATGTTTATGGTGCCTTATCCTGAAAAGAATGAGGATTAGTATGAGTATTCA
* * * * * *
2324383 TGTTTATCTTATTTAAAAGACAAACTTTGACTCTATCAAAAACGGTGGAAGGGAAAGTTTTTCTT
581 TGCTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAGGAAAAGTTTTTCTT
* * * * * * * * *
2324448 GCGGCACCAAAGTATCAATTTCATGTATCCTAATGAAAGGAATGTGTTTTGGC-TCCCAATCTCG
646 GCGACACCAAAGCATCAATGTCATGTCTCCTAATGAAGGGAATGTATTTTAGCTTCACAATCTTG
* * *** * *
2324512 TAAAGAA-TGGAGATTGTTACGAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA
711 AAAAGAACTGAAGACACTTACGAGAATTGATTCTTGTCTTATTTAAGGGATGAACATTGATTTTA
* ** **
2324576 AGGAAAATAGGGCAAAGAAAAGATTTTCAAACAAAAAAAATCATTAATATCATTTATCCTAA-GA
776 AGAAAAATAGGGCAAAGAAAAGATTCCCATGCAAAAAAAATCATTAATATCATTTATCCTAATG-
** * *
2324640 AGGAGAATGGGTTTATAGTGCCTAATCCCAAAATGAATGAAGATCATTACTAGAATCCA-AGTTT
840 AGGAGAATAAGTTTACAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATA-TTT
* * * *
2324704 GTCTAATTTGAGGCATGAACTTAGACTTTAC-AAATATGGTAGGAA
904 GTCTTATTTGAGGCACGAACTTAGACTTTACAAAAT-TTGT-GGGA
* * *
2324749 AAAAGCCTTTCTTGC-AAAACGAAATTATCAATATGATC-TAACC-TAATGAGAAGACTATGTTT
1 AAAAGCCTTTCTTGCGAAAACGAAAGTATCAATATGA-CGTATCCATAAAGAGAAGACTATGTTT
* * * *
2324811 ATGTTGCCTTATCCTGAAAAGAATGAGGCTTAGTATGAGTATTCATGCTTGTCTTATTTAAGAGA
65 ATGGTGCCTTATCCTGAAAAGAATGAAGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGA
** * ** * *
2324876 CAAACTTTGATTCTATCAAAAATGGTGGAAGGAAAAGTTTTTC-C-TGCAACATCAAAGTATCAA
130 CAAACTTTGATTCTAT-AAAAAAAGTGGAAAGAAATCTTTTTCTCGTG--ACACCAAAGCATCAA
* * * * * * * * **
2324939 TGTCATGTTTCCTAATGAAGGG-ATGGTCTTTTAGCTTCACAATCTTGAAAATAACT-AAGACAC
192 TGTCATGTTTCCTAATG-AGGGAAT-GTGTTTTGGCTTCCCAAACTTTAAAA-GATTGGAGACTG
* * * ** * *
2325002 TTACGAGAATTAATTCTTGTCTTATTTAAGGTTTGAACATT-ATTTTAAAGGAAAAT-AGGCAAA
254 TTACGAGAATCAATCCTTGTCTTATTTATGGGATGAACTTTGATTTT-AAGAAAAATAAGGCAAA
* * * * *
2325065 GAAAAGATTCCCATGC-AAAAGAATCCTCAATATCATTTATCCTATCCTAATCAGGAGAATAAGT
318 GAAAAGATTTCCATGCAAAAAAAATCATTAATATCA--T-T--TATCCTAATAAGGAGAAT-AGT
* * * *
2325129 TTATAGTGCCTAATCACAAAATGAATGAAGATCATGACTAGAATCCATGTTTGTCTCATTTGAGG
377 TTATAGTGCCTAATCAAAAAATGAATGAAGATCATTACAAGAATCCATGTTTGTCTAATTTGAGG
* ** * ** **
2325194 CACGAACTTAGACTTTACAAAATTTGGTGGGAA-AAAAACTTTCTTGCCAAAGTAAAAAATCAAT
442 CACGAACTTAGACTTTACAAAATTT-GCGGGAAGAAAGCCTTTCTTGCAAAACCAAAGTATCAAT
* * * * **
2325258 ATGATTTATCATAAAGAGAAGACTGCGTTTATGGTGCCTTATCCTGAAAAGAAT-AGGGATTAGT
506 ATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTTATCCTGAAAAGAATGA-GGATTAGT
* * * ** *
2325322 ATGAGTATTTATG-TTCGTCTTATTTAAGAGACAAATTTTGATTCTATTAAAAAAAGTGGAAAGA
570 ATGAGTATTCATGCTT-GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAGGA
* * * * * *
2325386 AAATTTTTTTCTTGTGGCACCAAAGCATCGATGTCATGTTTCCTAAT-AAGGGAATGTATTTTGG
634 AAA-GTTTTTCTTGCGACACCAAAGCATCAATGTCATGTCTCCTAATGAAGGGAATGTATTTTAG
* * * * * ** * *
2325450 CTTCCCAAACTTTAAAAG-ATTGGAGACTGTTATGAGAATCGA-TCATTGTCTTATTTAAGGGAT
698 CTTCACAATCTTGAAAAGAACTGAAGACACTTACGAGAATTGATTC-TTGTCTTATTTAAGGGAT
* * * * * * * *
2325513 AAACTTTGATTTTATGAAAAATAGGGCAAAGAAAGGTTTTCCACGCAAAAAAAATCATTAACATC
762 GAACATTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTCCCATGCAAAAAAAATCATTAATATC
* * * * * * *
2325578 GTTTCTCCTAATCAGGAGAATATGTTTACAGTGCCGAATTGA-AAAATGAATGAAGATCATTACA
827 ATTTATCCTAATGAGGAGAATAAGTTTACAGTGCCTAA-TCACAAAATGAATGAAGATCATTACT
* * * * * * *
2325642 AGAATCCATGTTCGTCATATTTAAGGCAGGAACTTAGACTTTAAAAAATTAGTGGGA
891 AGAATCCATATTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAATTTGTGGGA
* * * *
2325699 AGAAATCCTTTCTTACGAAAAC-AAAGTATCAATATCG-TGTATCCA-AATGAGAAGACTATGTT
1 A-AAAGCCTTTCTTGCGAAAACGAAAGTATCAATAT-GACGTATCCATAAAGAGAAGACTATGTT
* *
2325761 TATTGTGCCTTAT-CTCGAAAAGAAAGAAGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGA
64 TATGGTGCCTTATCCT-GAAAAGAATGAAGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGA
* * * ** * * * *
2325825 GACAAACTTTGATTCTATCAAAAACG-GTAAAAGGAAAAGTTTTTCTTGCGACACCAAAGCCTAA
128 GACAAACTTTGATTCTATAAAAAAAGTG-GAAA-GAAATCTTTTTCTCGTGACACCAAAGCATCA
* * * * * * * *
2325889 ATTTCGTGTATCCTGATGGAGGGAATGTGTTTTGGC-TCCCAATCTCGT-AAAGAATGGAGATTG
191 ATGTCATGTTTCCTAAT-GAGGGAATGTGTTTTGGCTTCCCAAACT-TTAAAAGATTGGAGACTG
* *
2325952 TTACGAGAATCGATGCTTGTCTTATTT-TAGGGATGAACTTTGATTTTAAG-AAAATAAGGCAAA
254 TTACGAGAATCAATCCTTGTCTTATTTAT-GGGATGAACTTTGATTTTAAGAAAAATAAGGCAAA
** * *
2326015 GAAAAGATTTCCAAACAAAAAAAAATCATTAATATCATTTATCCTAAGAAGGAGAATGGGTTTAT
318 GAAAAGATTTCCATGC-AAAAAAAATCATTAATATCATTTATCCTAATAAGGAGAAT-AGTTTAT
* * * * * *
2326080 AGTACCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTAATTTGAGGTATG
381 AGTGCCTAATCAAAAAATGAATGAAGATCATTACAAGAATCCATGTTTGTCTAATTTGAGGCACG
* * * * ** * *
2326145 AACTTAGACTTTACAAAATATGGTGGGAAAAAAGCCTTTCTTGTAAAATAAAAGCATCAATTTCA
446 AACTTAGACTTTACAAAAT-TTGCGGGAAGAAAGCCTTTCTTGCAAAACCAAAGTATCAATATCA
** * * * *
2326210 TCAAACCTAATGAGAAGACTATGTTTATGTTGCCTTATCCTGAAAAGAATGAGGCTTAATATGAG
510 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTTATCCTGAAAAGAATGAGGATTAGTATGAG
*
2326275 TCTTCATGCTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAGGAAAAGTT
575 TATTCATGCTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAGGAAAAGTT
* * * * *
2326340 TTTAC-TGCAACATCAAAGCATCAACGTCATGTCTCCTAATGAAGGGATTGTCTTTTAGCTTCAC
640 TTT-CTTGCGACACCAAAGCATCAATGTCATGTCTCCTAATGAAGGGAATGTATTTTAGCTTCAC
* * *
2326404 AATCTTGAAACGAACT-AAGACACTTACAAGAATTGATTCTTGTCTTATTTAAGGTATGAACATT
704 AATCTTGAAAAGAACTGAAGACACTTACGAGAATTGATTCTTGTCTTATTTAAGGGATGAACATT
* * ** *
2326468 G-TTTTAAAGAAAAATA-GGCAAAGAAAAGATTCCCATGC-AAAAGAATCCTCCATATCAATTAT
769 GATTTT-AAGAAAAATAGGGCAAAGAAAAGATTCCCATGCAAAAAAAATCATTAATATCATTTAT
* *
2326530 CCTAATGAGGAGAATAAGTTTACAATGCCTAATCACAAAATGAATGAAGACCATTACTAGAATCC
833 CCTAATGAGGAGAATAAGTTTACAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
* *
2326595 ATATTTGTCTTTTTTGAGGCACGAACTTAAACTTTACAAAATTTGATGGGA
898 ATATTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAATTTG-TGGGA
* * * *
2326646 AAAAGACTTTCTTGCGAAAGC-AAAATATCAATATGACGTAT-CATAAAGAGAAGACTGTGTTTA
1 AAAAGCCTTTCTTGCGAAAACGAAAGTATCAATATGACGTATCCATAAAGAGAAGACTATGTTTA
* ** * * *
2326709 TGGTGCCTTATCCTAAAAAGAATGGGGATTAGTATGAGTATTTATGTTTGTCTTACTTATGAGAC
66 TGGTGCCTTATCCTGAAAAGAATGAAGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAC
* *
2326774 AAACTTTGATTCTATAAAAAATAGTTGAAAGAAATCCTTTTCTCGTGACACCAAAGCATCAATGT
131 AAACTTTGATTCTATAAAAAA-AGTGGAAAGAAATCTTTTTCTCGTGACACCAAAGCATCAATGT
*
2326839 CATGTTTCCTAATGAGGGAATGTGTTTTGGCTTCCCAAACTTTAAAAGATTTGGAGATTGTTACG
195 CATGTTTCCTAATGAGGGAATGTGTTTTGGCTTCCCAAACTTTAAAAGA-TTGGAGACTGTTACG
* * * * * *
2326904 AGAATCGATCCTTGCCTTATTTATCGGATAAACTTTGATTTTACGAAAAATAGGGCAAAGAAAAG
259 AGAATCAATCCTTGTCTTATTTATGGGATGAACTTTGATTTTAAGAAAAATAAGGCAAAGAAAAG
* *
2326969 ATTTCCATGCAAAAAAAATCATTAATATCATTTATCCTGATAAGGAGAATGTGTTTATTATAGTG
324 ATTTCCATGCAAAAAAAATCATTAATATCATTTATCCTAATAAGGAGAAT-AG--T-TTATAGTG
* * * * *
2327034 CCTAATCAAAAAATGAATGAAGATAATAACAAGAATCCATGTTTGTCGAATTTGAGGCACAAACA
385 CCTAATCAAAAAATGAATGAAGATCATTACAAGAATCCATGTTTGTCTAATTTGAGGCACGAACT
2327099 TAGACTTTACAAAAATTTGCGGGAAGAAAGCCTTTCTTGCAAAACCAAAGTATCAATATCATGTA
450 TAGACTTTAC-AAAATTTGCGGGAAGAAAGCCTTTCTTGCAAAACCAAAGTATCAATATCATGTA
* * *
2327164 TCCTAATGAGAAGACTATGTTTATGTTGCCTTATCCTAAAAAGAATGGGGATTAGTATGAGTATT
514 TCCTAATGAGAAGACTATGTTTATGGTGCCTTATCCTGAAAAGAATGAGGATTAGTATGAGTATT
* *
2327229 CATGCTTGTCTTATTTAAGAGACAAACTTTGATGCTATCAAAAATGGTGGAAGTAAAAGTTTTTC
579 CATGCTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAGGAAAAGTTTTTC
* * * * *
2327294 CTACGACATCAAAGCATCAATGTCATGTCTCCTAATGAAGGGATTGTTTTTTAGCTTCACAATCT
644 TTGCGACACCAAAGCATCAATGTCATGTCTCCTAATGAAGGGAATGTATTTTAGCTTCACAATCT
*
2327359 TGAAAAGAACT-AAGACACTTACGAGAATTGATTCTTGTCTTATTTAAGGTATGAACATTG-TTT
709 TGAAAAGAACTGAAGACACTTACGAGAATTGATTCTTGTCTTATTTAAGGGATGAACATTGATTT
*
2327422 TAAAAGAAAATA-GGCAAAGAAAAGATTCCCATG-AAAAA
774 TAAGA-AAAATAGGGCAAAGAAAAGATTCCCATGCAAAAA
2327460 TGAAAGCTTA
Statistics
Matches: 2267, Mismatches: 367, Indels: 148
0.81 0.13 0.05
Matches are distributed among these distances:
942 2 0.00
944 59 0.03
945 184 0.08
946 341 0.15
947 269 0.12
948 233 0.10
949 87 0.04
950 650 0.29
951 411 0.18
952 30 0.01
953 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (947 bp):
AAAAGCCTTTCTTGCGAAAACGAAAGTATCAATATGACGTATCCATAAAGAGAAGACTATGTTTA
TGGTGCCTTATCCTGAAAAGAATGAAGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAC
AAACTTTGATTCTATAAAAAAAGTGGAAAGAAATCTTTTTCTCGTGACACCAAAGCATCAATGTC
ATGTTTCCTAATGAGGGAATGTGTTTTGGCTTCCCAAACTTTAAAAGATTGGAGACTGTTACGAG
AATCAATCCTTGTCTTATTTATGGGATGAACTTTGATTTTAAGAAAAATAAGGCAAAGAAAAGAT
TTCCATGCAAAAAAAATCATTAATATCATTTATCCTAATAAGGAGAATAGTTTATAGTGCCTAAT
CAAAAAATGAATGAAGATCATTACAAGAATCCATGTTTGTCTAATTTGAGGCACGAACTTAGACT
TTACAAAATTTGCGGGAAGAAAGCCTTTCTTGCAAAACCAAAGTATCAATATCATGTATCCTAAT
GAGAAGACTATGTTTATGGTGCCTTATCCTGAAAAGAATGAGGATTAGTATGAGTATTCATGCTT
GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAGGAAAAGTTTTTCTTGCGAC
ACCAAAGCATCAATGTCATGTCTCCTAATGAAGGGAATGTATTTTAGCTTCACAATCTTGAAAAG
AACTGAAGACACTTACGAGAATTGATTCTTGTCTTATTTAAGGGATGAACATTGATTTTAAGAAA
AATAGGGCAAAGAAAAGATTCCCATGCAAAAAAAATCATTAATATCATTTATCCTAATGAGGAGA
ATAAGTTTACAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATATTTGTCTTAT
TTGAGGCACGAACTTAGACTTTACAAAATTTGTGGGA
Found at i:2328241 original size:13 final size:13
Alignment explanation
Indices: 2328223--2328248 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2328213 ATATTTTTTG
2328223 TGTATCGATACAT
1 TGTATCGATACAT
2328236 TGTATCGATACAT
1 TGTATCGATACAT
2328249 ATTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2328259 original size:32 final size:33
Alignment explanation
Indices: 2328202--2328266 Score: 114
Period size: 32 Copynumber: 2.0 Consensus size: 33
2328192 TACAAGCCAA
2328202 TGTATCGATACATATTTTTTGTGTATCGATACAT
1 TGTATCGATACATA-TTTTTGTGTATCGATACAT
2328236 TGTATCGATACATA-TTTTGTGTATCGATACA
1 TGTATCGATACATATTTTTGTGTATCGATACA
2328267 AGTTTGGCTA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
32 17 0.55
34 14 0.45
ACGTcount: A:0.28, C:0.12, G:0.15, T:0.45
Consensus pattern (33 bp):
TGTATCGATACATATTTTTGTGTATCGATACAT
Found at i:2328260 original size:19 final size:19
Alignment explanation
Indices: 2328202--2328266 Score: 70
Period size: 19 Copynumber: 3.6 Consensus size: 19
2328192 TACAAGCCAA
2328202 TGTATCGATACATATTTTTTG
1 TGTATCGATACATA--TTTTG
2328223 TGTATCGATAC--A---T-
1 TGTATCGATACATATTTTG
2328236 TGTATCGATACATATTTTG
1 TGTATCGATACATATTTTG
2328255 TGTATCGATACA
1 TGTATCGATACA
2328267 AGTTTGGCTA
Statistics
Matches: 38, Mismatches: 0, Indels: 14
0.73 0.00 0.27
Matches are distributed among these distances:
13 11 0.29
14 1 0.03
15 1 0.03
18 1 0.03
19 13 0.34
21 11 0.29
ACGTcount: A:0.28, C:0.12, G:0.15, T:0.45
Consensus pattern (19 bp):
TGTATCGATACATATTTTG
Found at i:2328371 original size:20 final size:20
Alignment explanation
Indices: 2328318--2328373 Score: 78
Period size: 20 Copynumber: 2.8 Consensus size: 20
2328308 ACATCTTTTT
*
2328318 CATGTATCGATACATTGCAA
1 CATGTATCGATACTTTGCAA
2328338 CATGTATCGATACTTTG-AA
1 CATGTATCGATACTTTGCAA
*
2328357 CTGTGTATCGATACTTT
1 C-ATGTATCGATACTTT
2328374 TAAGGGTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
19 3 0.09
20 30 0.91
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.38
Consensus pattern (20 bp):
CATGTATCGATACTTTGCAA
Found at i:2330341 original size:473 final size:472
Alignment explanation
Indices: 2328760--2337056 Score: 3047
Period size: 474 Copynumber: 17.2 Consensus size: 472
2328750 GCACGAACTT
* * * * * *
2328760 AGACTGTGTTTATGGTGCCTTATCGTGAAAAGAATGGGGATTACTATAAGTATATATGTTTGTTT
1 AGACTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATACATGTTTGTCT
* * * * * *** ** *
2328825 TATTTATGGGACAAACTTTGATTCTATCAAAAATAGTTGAAAGAAATCCTTTTC-CCCTAACACC
66 TATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAGGAAAAGTTTTTCTTGC-GACACC
* * * *
2328889 AAAGCATCAATGTCATGTTTCCTAATG-AGGGAATGTGTTTTGGCTTCCCAAACTTTGAAGGATT
130 AAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTTAAAGAATT
* * * * * ** *
2328953 GGAGACCGTTATGAGAATTGATCTATGTCTTATTTATGGGATAAACTTTGATTTTACAAAAAACA
195 -GAGACTGTTACGAGAATCGATCT-TGTCTTATTTAAGGGATGAACTTTGATTTTACGGAAAATA
*
2329018 GGGCAAAGAAAAGATTTCCATGC-AAAAAAAATCATTAATATCATTTATCCTAAAGAGGAGAATG
258 GGGCAAAGAAAAGATTTCCATGCAAAAAAAAATCATTAATATCATTTATCCTAATGAGGAGAATG
* * * ** * *
2329082 TGTTTATAGTGCGTAATCGA-AAAATGAATAAAGATAATTAGAAGAATCCATGTTTGTTGTACTT
323 TGTTTATAGTGCCTAATC-ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG-TATATTT
* * * * * *
2329146 AAGGCATGAA-TATAGGCTTTACAAAAATTGGCGAGAAGAAAGCCTTTCTTGTAAAACCAAAGTA
386 GAGGCATGAACT-TAGACTTTACAAAAATTGGTGAGAAAAAAGCCTTTCTTGCAAAA-CAAAGCA
2329210 TCAATATCG-TGTATCCTAATGAGA
449 TCAATAT-GATGTATCCTAATGAGA
2329234 AGACTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTA-ATGTTTGTC
1 AGACTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTA-TACATGTTTGTC
*
2329298 TTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTAG-GACAC
65 TTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAGGAAAAGTTTTTCTT-GCGACAC
* * * * * *
2329362 CAAAGCTTCAATTTCATGTATCCTAATAAAGGGAATGTGTTTTGGC-TCCTAATCTCGTAGAGAA
129 CAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCT-TTAAAGAA
* * * * * * *
2329426 TTAAAATTGTTACGAGAATCAATGTTGTCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAATA
193 TTGAGACTGTTACGAGAATCGATCTTGTCTTATTTAAGGGATGAACTTTGATTTTACGGAAAATA
* * * * *
2329491 GGGTAAAAAAAAGATTTCCA---AATGAAAAAATCATTAATATCATTAATCCTAATTAGGAGAAT
258 GGGCAAAGAAAAGATTTCCATGCAA-AAAAAAATCATTAATATCATTTATCCTAATGAGGAGAAT
* * ** * * *
2329553 GTGTTTATAGTGCCTAATCACAAAATGAATGATGATCATTACTAGAATCTATAATTATCACACTT
322 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGT-ATATTT
* * * * ** **
2329618 GAGGCATGAACTTAGACTTTCCAAAATTTGGTG-GGAAAAA-CACTTTCTTGTGAAAGTAAAAAA
386 GAGGCATGAACTTAGACTTTACAAAAATTGGTGAGAAAAAAGC-CTTTCTTG-CAAAACAAAGCA
* * *
2329681 TCCATATGATGTATCGTAAAGAGA
449 TCAATATGATGTATCCTAATGAGA
* ** * * *
2329705 ACACTATGTTTATGGTGCCTTATCCCAAAAAGAATGAGGATTAGAATGAGTATTCATGTTTGTCT
1 AGACTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATACATGTTTGTCT
* * * *
2329770 TA--TAAGAGACAAACTTTGATTCTATCAAAAATAGTGGAAAGAAAA-TCTTTTCTTGTGGCACC
66 TATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAGGAAAAGT-TTTTCTTGCGACACC
* * * *
2329832 AATGCATCAATGTCATGTTTCCTAATG-AGAGAATGTGTTTTGGCTTCCCAAACTTTAAA-AGAT
130 AAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTTAAAGA-AT
* *
2329895 TGGAGACTGTTACGAGAATCGATCCTTGTCTTATTTAAGGGATGAACTATGATTTTACGAAAAAT
194 T-GAGACTGTTACGAGAATCGAT-CTTGTCTTATTTAAGGGATGAACTTTGATTTTACGGAAAAT
* *
2329960 AAGGCAAAGAAAAGATTTCCATGCAAAAAAAAATCATTAATATCATTTATTCTAATGAGGAGAAT
257 AGGGCAAAGAAAAGATTTCCATGCAAAAAAAAATCATTAATATCATTTATCCTAATGAGGAGAAT
2330025 GTGTTTATAGTGCCTAATCGA-AAAATGAATGAAGATCATTTACTAGAATCCATG-TT-TATATT
322 GTGTTTATAGTGCCTAATC-ACAAAATGAATGAAGATCA-TTACTAGAATCCATGTTTGTATATT
* ** * *** *
2330087 TGAGGCACGAACTTAGACTTTACAAAAATTGGCAAGAAGAAAGCCTTTCTTGCGAGGTCAAAGTA
385 TGAGGCATGAACTTAGACTTTACAAAAATTGGTGAGAAAAAAGCCTTTCTTGC-AAAACAAAGCA
2330152 TCAATATTG-TGTATCCTAATGAGA
449 TCAATA-TGATGTATCCTAATGAGA
* * * * * *
2330176 AAACTTTTTTTATGGTACCTTATCCTGAAAAGAATAGGGATTAGTATGAGTATACGTGTTTGTCT
1 AGACTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATACATGTTTGTCT
* * * *
2330241 TATTTAAGAGACAAACTTTGATTCTACCAAAAACGGTGGATGGAAAAGTTTTTCTTGCAACACCA
66 TATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAGGAAAAGTTTTTCTTGCGACACCA
* *
2330306 AAGCATCAATATCATGTATCCTAATGAA-GGAATGTGTTTTGGC-TCCCAATCTTGTAAAGAATA
131 AAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTT-TAAAGAATT
* * * * *
2330369 GAGATTGTTATGAGAATCGATGCTTGTCTTATTTATGAGATGAACTTTGATTTTACGGATAATAG
195 GAGACTGTTACGAGAATCGAT-CTTGTCTTATTTAAGGGATGAACTTTGATTTTACGGAAAATAG
* * * * *
2330434 GGCAAAGAAAATATTT-C-TGTATAAAAAAAGTCATTAATATCATTTATCTTAAAGAGGAGAATG
259 GGCAAAGAAAAGATTTCCATGCA-AAAAAAAATCATTAATATCATTTATCCTAATGAGGAGAATG
* * * * * * * *
2330497 TATTTATAGTGCCTAATTACAAAATGAATGAAGATCATTTCTGGAATCAAAGTTTGTCTAATTCG
323 TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTAT-ATTTG
* *
2330562 AGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAG-CTTATCTTGCAAAACAAAAGCAT
387 AGGCATGAACTTAGACTTTACAAAAATTGGTGAGAAAAAAGCCTT-TCTTGCAAAAC-AAAGCAT
*
2330626 CAATATGATGTATCCTAAAGAGA
450 CAATATGATGTATCCTAATGAGA
* * *
2330649 AGTCTATGTTTATGGTGCCTTATCCTGAAAAGAATGGAGATTAGTATGAGTATTCATGTTTGTCT
1 AGACTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATACATGTTTGTCT
*
2330714 TATTTAA-ATGACAAACTTTGATTCTATCAAAAACAGTGGAAGGAAAAGTTTTTCTTGCGACATC
66 TATTTAAGA-GACAAACTTTGATTCTATCAAAAACAGTGGAAGGAAAAGTTTTTCTTGCGACACC
* * * * *
2330778 AAAGCATCAATGTCATGTATCCTAATAAAGGGAATGCGTATTT-GCTTCACATTCTTGAAAAGAA
130 AAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGT-TTTGGCTTCCCAATCTT-TAAAGAA
* * * * * *
2330842 CTGAGACAGTTACGAGAATCGATTCTTGTCTTATTTATGGTATGAACATT-ATTTTAAAGGAAAA
193 TTGAGACTGTTACGAGAATCGA-TCTTGTCTTATTTAAGGGATGAACTTTGATTTT-ACGGAAAA
* * **
2330906 TA-GGCAAAAAAAAAGATTCCCATGCAAAAAAAAATCATCCATATCATTTATCCTAATGAGGAGA
256 TAGGGC-AAAGAAAAGATTTCCATGCAAAAAAAAATCATTAATATCATTTATCCTAATGAGGAGA
* * * * * * *
2330970 ATATGTTTATAGTTG-CTAATCACAAAATGAAAGAAGATCATTACTACAGTCCAAGATTGTCTCA
320 ATGTGTTTATAG-TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTAT-A
* * **
2331034 TTTGAGGGATAAACTTAGACTTTACAAAAAACGGTGAGAAAAAAGCCTTTCTTGCAAAACAAAAG
383 TTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGAGAAAAAAGCCTTTCTTGCAAAAC-AAAG
* *
2331099 CATCAATATGACGTATCATAATGAGA
447 CATCAATATGATGTATCCTAATGAGA
* * * * *
2331125 AGACTATGTTTATGTTGCCTTATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTATTT
1 AGACTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATACATGTTTGTCT
* * *
2331190 TATTTAAGAGACAAACTTTGATTCTCTCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACATCA
66 TATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAGGAAAAGTTTTTCTTGCGACACCA
* * * * * *
2331255 AAGCTTTAATGTCATGTATCCTAATGAAGGGAATGTGTTTT-GCTTCACATTCTTGGAAAGAACT
131 AAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTT-TAAAGAATT
* * * * * * * * ** * *
2331319 GAGACAGTTATGAGAATCGATTCTTATCTTATTTAAGGTA-CATC-CT-AATGAAGGGAAAGT-G
195 GAGACTGTTACGAGAATCGA-TCTTGTCTTATTTAAGGGATGAACTTTGATTTTACGGAAAATAG
* * * *** * * ** * * * ** * *
2331380 TTTTTGCTTCACATTCTTGAAAAGAACTGAGAGAGCTACGAGAATTGATTCTTGTC--TTAT-TT
259 -----G--GCA-A----AGAAAAG-ATTTCCA-TGCAAAAAAAAATCATTAATATCATTTATCCT
* * * *** * ** * * *
2331442 AAGGTATGAACAAT-TAAACGAAAACAG-G--TAAAGAAAATATTCCCATGCAAAAGAAAATCA-
310 AATG-A-GGAGAATGT----GTTTATAGTGCCTAATCACAA-A-----ATG--AATGAAGATCAT
* * * * *** * *** * * *
2331502 T-CCA-TAT-CAT-TTATCCTAAAGAGGA-GAATGTGTTTATAGTTCCTAATCACAAA-T--TGA
361 TACTAGAATCCATGTT-T-GTATATTTGAGGCATGAACTTAGACTT--T-A-CAAAAATTGGTGA
* * * * * * ** * * * * * * * * *
2331559 -ATGAAGATCATTACTAG-AATTC-ATGTTTATCTCATTTGAGGCATGAACTTAGACTTTATA
420 GA-AAAAAGCCTTTCTTGCAAAACAAAG--CATC-AATATGATG--T-ATCCTA-A--TGAGA
* * ** **** * * * * * * * * * *
2331619 A-AATTTGGTGGGAAAAAAGCATT-TCTTGCGAAATGAA--AGCATCAATATGA-TACAACCTAA
1 AGACTAT-GT--TTATGGTGCCTTATCCT--GAAAAGAATGGGGATTAGTATGAGTA-TACAT-G
* * * * * * * * **
2331679 TTAGAATAC-TACGTTTATG-GTGC---C--T-AATCT-TGAAAAGA-ATGGGGATTTGTATGAG
59 TTTG--T-CTTA--TTTAAGAG-ACAAACTTTGATTCTATCAAAA-ACA-GTGGA--AGGAAAAG
* *** * * * * * ** *
2331734 TATTCATGT-TTGTCTTA-TTTAAGGGA-CAAACTTTGAT-TCCAT-CAAAAAAAGTGGAAAGAA
114 T-TT--T-TCTTG-C-GACACCAAAGCATC-AA-TGTCATGT--ATCCTAATGAAG-GGAATG--
* *** * * ** * * * * *** *
2331794 AATCTTTT--CTTGTGACA-C--CAAAGCATCAATGCCATGTTTCCA-AATGAGAGAATGT-GT-
166 --TGTTTTGGCTTCCCA-ATCTTTAAAGAATTGA-GAC-TGTTACGAGAAT-CGATCTTGTCTTA
* * **** * * * * ** ** * **
2331851 TTT---GGCT--TCCCAAACTTTA--AAAGAATAGAGACTATTACGAGAATTGATCCTTGTCTTA
225 TTTAAGGGATGAACTTTGATTTTACGGAA-AATAG-GGCAAAGAAAAG-ATT--TCCATG-CAAA
*** *** * * **** * ** ** * *
2331909 TTTAAGGAATTAACTTTGATTTTAAGAAAAAT-AGGGTAAACAAATGATTTCCA-CG-C-AA-AA
284 AAAAAATCATTAA-TATCA-TTT-ATCCTAATGA-GG-AGA-ATGTG-TTTATAGTGCCTAATCA
* * * * * * * * *** * *
2331969 AAAAAT-CATCAATATCATT--T---ATCCTAATG--AGGAGAATGTG-TTTATAGTACCTA-A-
342 CAAAATGAATGAAGATCATTACTAGAATCC--ATGTTTGTA-TATTTGAGGCAT-GAACTTAGAC
* * * * * * * ******
2332023 -TCACAAAATGAATGAAGATCATTACTAAAATCCATT-TTGTCTCTTTTGAAGCA-CGAACT-TA
403 TTTACAAAA--ATTG--G-TGA-GA-AAAAAGCCTTTCTTG-C-AAAACAAAGCATC-AA-TAT-
* ***
2332084 GACTTTACTAAAAATGGTAGGA
456 GA-TGTA-TCCTAAT-G-A-GA
* ** ** * ** *** * * * * * * *
2332106 AAAAAACCTTTCTTGCGAAACAAAAGCATCAAAATG-AT--GCATT-CTAATGAGAAGACTATGT
1 AGACTATGTTT-ATG-G-TGCCTTATCCTGAAAA-GAATGGGGATTAGT-ATGAGTATAC-ATG-
* * *
2332167 TTATGGTGCCTTATCTTGAAAAGAATCGGGATTAGTATCAGTATTCATGTTTGTCTTATTTAAGA
59 TT-T-GT--CTTAT-TT-AAGAG-A-C---A--A--A-C----TT--TG-AT-TC-TA-TCAA-A
* * * * *
2332232 GACAAACTTTGATTCTATCAAAAATAGTGGAAAAAAAAGCTTTTCTTGCGACATCAAAGCATCAA
97 -A-ACA-GTGGA-------------A--GG----AAAAGTTTTTCTTGCGACACCAAAGCATCAA
* * * * * **
2332297 TGTCATGTATTCTAATGAAGGGAATGTGTTTTGGCTTCACAATCTTGAAAGAAACTAAGACAATT
140 TGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTTAAAG-AATTGAGACTGTT
** * * * ** * *
2332362 TTGAGAATCGATTCCTGTCTTATTTAAGGTAAGAAAATTG-TTTTAAAGGAAAATA-GGAAAAGA
204 ACGAGAATCGA-TCTTGTCTTATTTAAGGGATGAACTTTGATTTT-ACGGAAAATAGGGCAAAGA
* * * * *
2332425 AAAGA-TTCTCATGCAAAAGAAAATCATCAATATCATTTATCCTAAAGAAGAGGACT-TGTTTAT
267 AAAGATTTC-CATGCAAAAAAAAATCATTAATATCATTTATCCTAATGAGGA-GAATGTGTTTAT
* * * * *
2332488 AGTGCCTAATCATAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTTTTTTGAGGCTTG
330 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGT-ATATTTGAGGCATG
* * * *
2332553 AACTTAGACTTCACCAAAAA-TGATG-GAAAAAAAGCCCTTT-TTGCAAAACAAATACATCAGTA
394 AACTTAGACTTTA-CAAAAATTGGTGAG-AAAAAAG-CCTTTCTTGCAAAACAAA-GCATCAATA
*
2332615 TGATGTATCCTAAAGAGA
455 TGATGTATCCTAATGAGA
* * *
2332633 AGACTATGTTTATGGTGCCTTATCTTGAAAAAAATGGGGATTAGTATGAGTATTCATGTTTGTCT
1 AGACTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATACATGTTTGTCT
* * * *
2332698 TATTTAAGAGACAAACTTTTATTCTATCAAAAACGGTAGAAGGAAAAGTTTTTCTTGCGACATCA
66 TATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAGGAAAAGTTTTTCTTGCGACACCA
* * * * * * * * *
2332763 AAGCATCAATTTCATGTATCCTAATAAAGGGAAAGTATATTT-GCTTCACATTCTTGAAAAAAAC
131 AAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGT-TTTGGCTTCCCAATCTT-TAAAGAAT
* * * * **
2332827 TGAGACAGTTACGAGAATCGATTCTTGTCTTATTTATGGTATGAACATT-ATTTTTAAAGAAAAT
194 TGAGACTGTTACGAGAATCGA-TCTTGTCTTATTTAAGGGATGAACTTTGA-TTTTACGGAAAAT
* * * * * * ** *
2332891 A-GGCAATGAAAAGATTCCCACGCAGAAGAAAATTATCCATATCGTTTATCCTAATGAGGAGAAT
257 AGGGCAAAGAAAAGATTTCCATGCAAAAAAAAATCATTAATATCATTTATCCTAATGAGGAGAAT
* * * * * * * **
2332955 ATGTTTATAGTTCCTAATCACAAAATGATTGAAGATCATTACTACAGTCCAAGATTGTCCCATTT
322 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGT-ATATTT
* * ** * * *
2333020 GAGGCATAAATTTAGACTTTACAAAAAAGGGCGGGAAAAAAGCCTTCCTTGCGAAATA-AAAGCA
386 GAGGCATGAACTTAGACTTTACAAAAATTGGTGAGAAAAAAGCCTTTCTTGC-AAA-ACAAAGCA
2333084 TCAATATGATGTATCCTAATGAGA
449 TCAATATGATGTATCCTAATGAGA
* * * * *
2333108 AGACTATGTTTATGTTGCCTTATCCTGAAAAGAATGGGGATTAGTATAAGTATTCTTGTTTGTTT
1 AGACTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATACATGTTTGTCT
* * * * * **
2333173 TATTTAAGACACAAACTTTAATTCTATTAAAAACGGTGAAAGGAAAAGTTTTTCTTGCGACATTA
66 TATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAGGAAAAGTTTTTCTTGCGACACCA
* * * * * * *
2333238 AAGCTTCAATGTCATGTATCCTAATGAAGGGAATGTATTTTTGCTTCACATTCTTGAAAAGAACT
131 AAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTT-TAAAGAATT
* * * ** * * **
2333303 GAGACAGTTACAAGAATCGATTCTTGTCTTATTTATGCTATGAACATT-ATTTCAAAAGAAAATA
195 GAGACTGTTACGAGAATCGA-TCTTGTCTTATTTAAGGGATGAACTTTGATTT-TACGGAAAATA
* ** ** *
2333367 -GGCAAAGAAAAGATTCCCATGCAAATGAAAATCATCCATATCATTTATCCTAATGAGGAGAATA
258 GGGCAAAGAAAAGATTTCCATGCAAAAAAAAATCATTAATATCATTTATCCTAATGAGGAGAATG
* * * * * *
2333431 TCTTTATAGTTCCTAATCACAAAATGAATGAATATCAATACTAGAATCCAAGTTTGTCTCATTTG
323 TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTAT-ATTTG
* * *
2333496 AGGCACGGACTTAGACTTTAC--GAATT-GT--G---AAA------C--G------AAAGCATCA
387 AGGCATGAACTTAGACTTTACAAAAATTGGTGAGAAAAAAGCCTTTCTTGCAAAACAAAGCATCA
* * **
2333539 ATATGGTATATCCTAAAAAGA
452 ATATGATGTATCCTAATGAGA
* * * * * *
2333560 AGTCTATGTTTCTGATGCCTTATCCTGAAAAGAGTGGGGATTAGTATGAGTATTCATGTTTGCCT
1 AGACTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATACATGTTTGTCT
* * * * *
2333625 TATTTAAGACACAAACTTTGATTCTATCAAAAACGGTGGAA-GCAAAGTTTTTCTTGCAACATCA
66 TATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAGGAAAAGTTTTTCTTGCGACACCA
* * * * * * *
2333689 AAGCTTCAATGTCATGCATCCTAATGAAGGGAATGTGTTTTCGCTTCACATTCTTGAAAAGAACT
131 AAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTT-TAAAGAATT
** * * * * * * * ** *
2333754 GAGAGAGTTGCGAGAATCGATTCTTATCTTATTTAAGGTA-CATC-CT-AATGAAAGG--AAT-G
195 GAGACTGTTACGAGAATCGA-TCTTGTCTTATTTAAGGGATGAACTTTGATTTTACGGAAAATAG
***** *** * * * * * * *
2333813 TGTTTTTGCCTCACA-TT-CTTG-AAAAGAATTGAGA-GAGTTACGAGAATCGATTCTTGTCTTA
259 -GGCAAAG-AAAAGATTTCCATGCAAAA-AA---AAATCA-TTA--A-TATC-A-T-TTATCCTA
* * * * *** * * * * **
2333874 TTTAAG-GCATGAACATTAT--T--TTAAACA-AAAATAGGCAAAGAAAAGATTCCCATGCAAAA
311 ATGAGGAGAATG-TGTTTATAGTGCCTAATCACAAAAT--G-AATG--AAGA-T--CAT-TACTA
* * ** * *** * * *
2333933 GAAAATCATCCATATCATT-TATCCTAAAGAGGAGAATGTTTTTATAGTTCCTAATCACAAATT-
366 G---A--ATCCATGT--TTGTAT-AT-TTGA-G-GCATGAACTTAGACTT--T-A-CAAAAATTG
* * ** * * ** * * * * * * *
2333996 G-AATGAAGATTG--TTACTAG-AATTC-ATGCTTATCTCATTTGAGGCATGAACTTAGACTTTA
416 GTGA-GAAAAAAGCCTTTCTTGCAAAACAAAGC--ATC-AATATGATG--T-ATCCTA-A--TGA
*
2334056 TA
471 GA
* ** **** * * * * * * * * *
2334058 A-AATATGGTGGGAAAAAAGCATT-TCTTGCAAAATGAA--AGCATCAATATGATGCAT-CCTAA
1 AGACTAT-GT--TTATGGTGCCTTATCCTG-AAAA-GAATGGGGATTAGTATGA-GTATACAT-G
* * * * * * * **** **** ** * * * *
2334118 TTAGAATACTATGTTTATGGCGCCTAA-TCCTGAAGAGAATGGGGATTAGTATG-AGTATTCATG
59 TTTG--T-CT-TATTTA-AGAGACAAACT-TTG-ATTCTATCAAAAACAGT-GGAAGGA--AAAG
* *** * * * * ** * ** * *
2334181 TTTGTCTTATTTA-AGGGACAAA-CTTTAAT-TCCATCATAAAC-AGTGGAAAGAAAATCTTTTC
114 TTTTTCTT-GCGACA---CCAAAGCATCAATGT-CAT-GTATCCTAAT-G-AAGGGAATGTGTT-
* * * * * * * *** * * *
2334242 TTGTGAC-ACCGAAGCATCAATGTCA-TGTTTCT-TAATGA-GAGAAT-GTGTTTTGGCTTCCCA
170 TTG-G-CTTCCCAATCTTTAAAG-AATTGAGACTGT--T-ACGAGAATCG-ATCTTGTCTT----
* * * *
2334302 AACTTTAAAAGATTAGAGACTATTACGAGAATCGATCATTGTCTTATTTAAGGGATGAACTTTGA
224 -A-TTT--AAG----G-G---A-T----GAA-C--T--TTG----ATTTTACGGA--AA-ATAG-
**** ** *
2334367 TTTTAAGAAAA-ATAAGGCAAACAAATGATTTACATGCAAAAGAAAATCATCAATATCATTTATC
259 GGCAAAGAAAAGAT--TTC---C--ATG-----CA---AAAA-AAAATCATTAATATCATTTATC
* *
2334431 CTAAT-ATGGAGAATGTGTTTATAGTACCTAATCACAAAATGAATGAAGATCATTACTAAAATCC
308 CTAATGA-GGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
* * * *
2334495 ATGTTTGTTTCTTTTGAGGCATGAACTTAGACTTTACAAAAAATGGT-AGGAAAAAAACCTTTCT
372 ATGTTTGTAT-ATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGA-GAAAAAAGCCTTTCT
*
2334559 TGCAAAACGAAAGCATCAATATGATGCATCCTAATGAGA
435 TGCAAAAC-AAAGCATCAATATGATGTATCCTAATGAGA
* * *
2334598 AGACTATGCTTATGGTG-CTTAATCCTGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTC
1 AGACTATGTTTATGGTGCCTT-ATCCTGAAAAGAATGGGGATTAGTATGAGTATACATGTTTGTC
** * * *
2334662 TTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAA-AAAAAGCCTTTT-TTGCGACAT
65 TTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAGGAAAAG-TTTTTCTTGCGACAC
* * *
2334725 CAAAGCATCAATATCATGTATCCTAATAAAGGGAATGTGTTTTGGCTTCACAAT-TTTGAAAGAA
129 CAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTT-AAAG-A
* * ** ** * * * * * *
2334789 ACTAAGACAATTTTGAGAATCAATTCTTATCTTATTTAAGGTAAGAACATTG-TTTTAAAGGAAA
192 ATTGAGACTGTTACGAGAATCGA-TCTTGTCTTATTTAAGGGATGAACTTTGATTTT-ACGGAAA
* * * * *
2334853 ATA-GGCAAAGAAAAGATTCCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAAGAAGAGA
255 ATAGGGCAAAGAAAAGATTTCCATGCAAAAAAAAATCATTAATATCATTTATCCTAATGAGGAGA
** * * *
2334917 ACATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCTT
320 ATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTAT-AT
* * *
2334982 TTGAGGCATGAACTTAGACTTTGCCGAAAA-TGGTG-GAAAAAAATCCATTT-TTGCAAAACGAA
384 TTGAGGCATGAACTTAGACTTT-ACAAAAATTGGTGAG-AAAAAAGCC-TTTCTTGCAAAAC-AA
* *
2335044 TGCATCAATATGATGTATCCTAAAGAGA
445 AGCATCAATATGATGTATCCTAATGAGA
* ** * *
2335072 AGACTACGTTTATGGTGTGTTATCCTGAAAAGAATGTGGATTAGTATGAGTATTCATGTTTGTCT
1 AGACTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATACATGTTTGTCT
* * ** *
2335137 TATTTATGAGACAAACTTTGATACTATCAAAAATGGTGGAAGGAAAAGTTTTTCTTGGGACACCA
66 TATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAGGAAAAGTTTTTCTTGCGACACCA
* * * * *
2335202 AAGCATCAATTTCATGTA-CCTGAATCAAGGGAATGTG-TTTGTC-TCCCAGTCTCATAAAGAAT
131 AAGCATCAATGTCATGTATCCT-AATGAAGGGAATGTGTTTTGGCTTCCCAATCT-TTAAAGAAT
* * * * ** * * *
2335264 GGACATTGTTACGAGAATAGATGCTTACCTTATTTAGGGGATGAACTTTGATTTTAAGAAAAATA
194 TGAGACTGTTACGAGAATCGAT-CTTGTCTTATTTAAGGGATGAACTTTGATTTTACGGAAAATA
* * * * * * * *
2335329 GGGCAAAGAAAATATTTCCAGGCAAAAGAAAATAATAAATATCATTTATACTAATGAGAAAAATG
258 GGGCAAAGAAAAGATTTCCATGCAAAAAAAAATCATTAATATCATTTATCCTAATGAGGAGAATG
* * * * * *
2335394 TGTTTATAGTGCCTAATCACAAAGTTAACGAAAATCATTACTAGAATCCATGTTTGTCTCTTTTG
323 TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTAT-ATTTG
* * * * * * ** *
2335459 AGGCATGAACTTAGACTTTA-AAAAAATCGTGGGAAAAGAGCTTTTCTTGTGAAATGAAAGCGTC
387 AGGCATGAACTTAGACTTTACAAAAATTGGTGAGAAAAAAGCCTTTCTTG-CAAAACAAAGCATC
*
2335523 AATATGATGTATCCTAAAGAGA
451 AATATGATGTATCCTAATGAGA
* * * * *
2335545 AGACTATGTTTATGTTGCCTCATCCGGAAAAGAATGGGGATTAGTATGAATATTCATGTTTGTCT
1 AGACTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATACATGTTTGTCT
* * *
2335610 TATTTAATAGACAAACTTTGATTCTATCAGAAACTGTGGAAGGAAAAGTTTTTCTTGCGAC-CTC
66 TATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAGGAAAAGTTTTTCTTGCGACAC-C
* *
2335674 GAAA-CATCAATTTCATGTATCC---T-------A----TTTTGGC-TCCAAATCTTGTAAAGAA
130 -AAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTT-TAAAGAA
* * * * * * * *
2335723 TAGAGA-TGTTGCGAGAATTGAAGCTTATTTTATTTAAGGGGTGAACTTTGATTTTAAGGAAAAT
193 TTGAGACTGTTACGAGAATCG-ATCTTGTCTTATTTAAGGGATGAACTTTGATTTTACGGAAAAT
* * * ** *
2335787 AGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATGATCGATATCTTTTATCCTAATGAGGAGAAT
257 AGGGCAAAGAAAAGATTTCCATGCAAAAAAAAATCATTAATATCATTTATCCTAATGAGGAGAAT
* * * *
2335852 GTGTTTATTGTGCCTAATCACAAAATGAATGAAGATCATTACTACAATCCATGTTTGTCTCTTTT
322 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTAT-ATTT
* * *
2335917 GAGGCACGAACTTAGACTTTACAAAAAATGGTG-GGAAAAAGCCTTTCTTGCAAAACAAAAGCAT
386 GAGGCATGAACTTAGACTTTACAAAAATTGGTGAGAAAAAAGCCTTTCTTGCAAAAC-AAAGCAT
*
2335981 CAATATGATGCATCCTAATGAGA
450 CAATATGATGTATCCTAATGAGA
** * * * *
2336004 AGACTACATTTATGGTGCCTTATCTTGAAAGGAATGGGGATTTGTATGAGCT-TTCATGTTTGTC
1 AGACTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAG-TATACATGTTTGTC
* *
2336068 TTATTTAAGAGACAAACTTTGATTCTATCAAAAAC-GATGGAAGGAAGAGTTTTTCTTGCAAC-C
65 TTATTTAAGAGACAAACTTTGATTCTATCAAAAACAG-TGGAAGGAAAAGTTTTTCTTGCGACAC
* * * * *
2336131 TCAAAGCATCAATTTCATGTATCCGAATGAAGGGAATGTGTTTT-TC-TCCCAATCTAGTAAAAA
129 -CAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCT-TTAAAGA
* * * * * * * *
2336194 ATGGAGATTGTTATGAGAATTGATGCTTCTCTTATTTACGGCATGAACTTTGATTTTAAGGAAAA
192 ATTGAGACTGTTACGAGAATCGAT-CTTGTCTTATTTAAGGGATGAACTTTGATTTTACGGAAAA
* * * * *
2336259 AAGGGAAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCATAATGAGGAGAA
256 TAGGGCAAAGAAAAGATTTCCATGCAAAAAAAAATCATTAATATCATTTATCCTAATGAGGAGAA
* * * *
2336324 TGTGTTTATGGTGCCTAATCACAAAATGAATGAAGATCATTACAAGAATCCATGTTTGTCTCTTT
321 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTAT-ATT
* *** * * * * *
2336389 TGATGCCCAAACTTCGAATTT-CTAAAAAATGGTG-GAAAAAAAGCCTTCCTTGCGAAACGAAAG
385 TGAGGCATGAACTTAGACTTTAC-AAAAATTGGTGAG-AAAAAAGCCTTTCTTGCAAAAC-AAAG
2336452 CATCAATATGATGTATCCTAATGAGA
447 CATCAATATGATGTATCCTAATGAGA
* * * * *
2336478 AGACTATGTTTATGTTGCCTTATCCTAAAAAGAATAGAGATTAGTATGAGTATTCATGTTTGTCT
1 AGACTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATACATGTTTGTCT
* * * * * *
2336543 TATTTAAGAGACAAACTTTGATTCTAACAAAAA-TGAAGGAAGGAAAAATTTTTCATGCGACATC
66 TATTTAAGAGACAAACTTTGATTCTATCAAAAACAG-TGGAAGGAAAAGTTTTTCTTGCGACACC
* * * * *
2336607 AAAGCATCAATGTCATGTATCCTAATGAAGGGGATGTGCTTTGGGTTCACAATCTTGAAAAGAAT
130 AAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTT-TAAAGAAT
* * * * * *
2336672 TAAGA-TAGTTACAAGAATCAATTCTTGTCTTATTTAAGGTATGAACATT-ATTTTAAAGGAAAA
194 TGAGACT-GTTACGAGAATCGA-TCTTGTCTTATTTAAGGGATGAACTTTGATTTT-ACGGAAAA
** * * * *
2336735 TA-GGCAAAGAAAA-AAGTCTAACGCAAAAGAAAATC-TTCAATA-CATTTATCCTAATAAGGAG
256 TAGGGCAAAGAAAAGATTTC-CATGCAAAAAAAAATCATT-AATATCATTTATCCTAATGAGGAG
* * * * * * * * *
2336796 AATATATTTGTAGTGCCTAATCACAAAAGGAATGAAGACCATTAGTATAATCCAAGTTTGTCTCA
319 AATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTAT-A
* * * **
2336861 TTTGAGGTACGAACTTAGACTTTACAAAACTTGGTGAGAAAAAAGCCTTTCTTGTGAAACGAAAG
383 TTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGAGAAAAAAGCCTTTCTTGCAAAAC-AAAG
* * *
2336926 CATCAGTATGACGTATCCTAAAGAGA
447 CATCAATATGATGTATCCTAATGAGA
* * * *
2336952 AGACTATGTTTATGGTGCCCTATCCT-AAAAAAATTGGGGATTAGTATGAGTATTCATGATTGTC
1 AGACTATGTTTATGGTGCCTTATCCTGAAAAGAA-TGGGGATTAGTATGAGTATACATGTTTGTC
* * *
2337016 TTATTTAAAAGACAAACTTTGATT-TCATCAGAAACAATGGA
65 TTATTTAAGAGACAAACTTTGATTCT-ATCAAAAACAGTGGA
2337057 GATTGTTACG
Statistics
Matches: 5895, Mismatches: 1352, Indels: 1152
0.70 0.16 0.14
Matches are distributed among these distances:
445 3 0.00
446 7 0.00
447 3 0.00
448 7 0.00
449 6 0.00
450 7 0.00
451 122 0.02
452 125 0.02
453 5 0.00
454 4 0.00
455 17 0.00
456 1 0.00
458 9 0.00
459 357 0.06
460 35 0.01
461 1 0.00
462 2 0.00
463 1 0.00
464 6 0.00
465 4 0.00
466 4 0.00
467 5 0.00
468 33 0.01
469 99 0.02
470 107 0.02
471 265 0.04
472 318 0.05
473 804 0.14
474 1044 0.18
475 894 0.15
476 394 0.07
477 16 0.00
478 4 0.00
479 6 0.00
480 1 0.00
481 2 0.00
482 7 0.00
483 22 0.00
484 26 0.00
485 24 0.00
486 6 0.00
487 52 0.01
488 48 0.01
489 21 0.00
490 22 0.00
491 17 0.00
492 20 0.00
493 17 0.00
494 34 0.01
495 24 0.00
496 17 0.00
497 18 0.00
498 18 0.00
499 26 0.00
500 32 0.01
501 17 0.00
502 16 0.00
503 13 0.00
504 14 0.00
505 11 0.00
506 12 0.00
507 1 0.00
508 2 0.00
509 11 0.00
510 2 0.00
511 13 0.00
512 8 0.00
513 11 0.00
514 16 0.00
515 14 0.00
516 5 0.00
517 4 0.00
518 8 0.00
519 6 0.00
520 11 0.00
522 7 0.00
523 16 0.00
524 23 0.00
525 14 0.00
526 21 0.00
527 28 0.00
528 7 0.00
529 13 0.00
530 20 0.00
531 35 0.01
532 41 0.01
533 40 0.01
534 24 0.00
535 6 0.00
536 6 0.00
537 30 0.01
538 17 0.00
539 20 0.00
540 10 0.00
541 9 0.00
542 2 0.00
543 10 0.00
544 7 0.00
545 1 0.00
546 11 0.00
547 22 0.00
548 1 0.00
549 7 0.00
550 4 0.00
551 9 0.00
552 2 0.00
553 6 0.00
556 2 0.00
557 3 0.00
558 1 0.00
559 2 0.00
560 18 0.00
561 5 0.00
562 5 0.00
563 4 0.00
564 6 0.00
565 5 0.00
566 5 0.00
567 1 0.00
568 1 0.00
569 4 0.00
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (472 bp):
AGACTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATACATGTTTGTCT
TATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAGGAAAAGTTTTTCTTGCGACACCA
AAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTTAAAGAATTG
AGACTGTTACGAGAATCGATCTTGTCTTATTTAAGGGATGAACTTTGATTTTACGGAAAATAGGG
CAAAGAAAAGATTTCCATGCAAAAAAAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGT
TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTATATTTGAGGC
ATGAACTTAGACTTTACAAAAATTGGTGAGAAAAAAGCCTTTCTTGCAAAACAAAGCATCAATAT
GATGTATCCTAATGAGA
Found at i:2331423 original size:89 final size:88
Alignment explanation
Indices: 2331272--2331447 Score: 280
Period size: 89 Copynumber: 2.0 Consensus size: 88
2331262 AATGTCATGT
* * * *
2331272 ATCCTAATGAAGGGAATGTGTTTTGCTTCACATTCTTGGAAAGAACTGAGACAGTTATGAGAATC
1 ATCCTAATGAAGGGAAAGTGTTTTGCTTCACATTCTTGAAAAGAACTGAGACAGCTACGAGAATC
2331337 GATTCTTATCTTATTTAAGGTAC
66 GATTCTTATCTTATTTAAGGTAC
*
2331360 ATCCTAATGAAGGGAAAGTGTTTTTGCTTCACATTCTTGAAAAGAACTGAGAGAGCTACGAGAAT
1 ATCCTAATGAAGGGAAAGTG-TTTTGCTTCACATTCTTGAAAAGAACTGAGACAGCTACGAGAAT
* *
2331425 TGATTCTTGTCTTATTTAAGGTA
65 CGATTCTTATCTTATTTAAGGTA
2331448 TGAACAATTA
Statistics
Matches: 80, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
88 19 0.24
89 61 0.76
ACGTcount: A:0.31, C:0.13, G:0.21, T:0.35
Consensus pattern (88 bp):
ATCCTAATGAAGGGAAAGTGTTTTGCTTCACATTCTTGAAAAGAACTGAGACAGCTACGAGAATC
GATTCTTATCTTATTTAAGGTAC
Found at i:2331910 original size:559 final size:562
Alignment explanation
Indices: 2330796--2331915 Score: 1473
Period size: 559 Copynumber: 2.0 Consensus size: 562
2330786 AATGTCATGT
* *
2330796 ATCCTAATAAAGGGAATGCGTATTTGCTTCACATTCTTGAAAAGAACTGAGACAGTTACGAGAAT
1 ATCCTAATAAAGGGAAAGCGTATTTGCTTCACATTCTTGAAAAGAACTGAGACAGCTACGAGAAT
* * *
2330861 CGATTCTTGTCTTATTTATGGTATGAACATTATTTTAAAGGAAAATAGGCAAAAAAAAAGATTCC
66 CGATTCTTGTCTTATTTAAGGTATGAACA-TA-TTTAAACGAAAACAGGCAAAAAAAAAGATTCC
* *
2330926 CATGCAAAAAAAAATCATCCATATCATTTATCCTAATGAGGAGAATATGTTTATAGTTGCTAATC
129 CATGCAAAAAAAAATCATCCATATCATTTATCCTAAAGAGGAGAATATGTTTATAGTTCCTAATC
* * *
2330991 ACAAAATGAAAGAAGATCATTACTACAGTCCAAGATTGTCTCATTTGAGGGATAAACTTAGACTT
194 ACAAAATGAAAGAAGATCATTACTACAATCCAAGATTATCTCATTTGAGGCATAAACTTAGACTT
* ** *
2331056 TACAAAAAACGGTGAGAAAAAAGCCTTTCTTGCAAAACAAAAGCATCAATATGACGTATCATAAT
259 TACAAAAAACGGTGAGAAAAAAGCATTTCTTGCAAAACAAAAGCATCAATATGACACAACATAAT
* * *
2331121 GAGAAGACTATGTTTATGTTGCCTTATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTT
324 GAGAAGACTACGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTT
* ** *
2331186 ATTTTATTTAAGAGACAAACTTTGATTCTCTCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGAC
389 ATCTTATTTAAGAGACAAACTTTGATTCTCTCAAAAAAAGTGGAAAGAAAAGTTTTTCTTGCGAC
* * * * * * ** *
2331251 ATCAAAGCTTTAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGCTTCACATTCTTGGAAAGA
454 ACCAAAGCATCAATGCCATGTATCCAAATGAAGAGAATGTGTTTTGCTTCACAAACTTGAAAAGA
* *
2331316 ACTGAGACAGTTATGAGAATCGATTCTTATCTTATTTAAGGTAC
519 ACTGAGACAGTTACGAGAATCGATCCTTATCTTATTTAAGGTAC
* * * *
2331360 ATCCTAATGAAGGGAAAGTGTTTTTGCTTCACATTCTTGAAAAGAACTGAGAGAGCTACGAGAAT
1 ATCCTAATAAAGGGAAAGCGTATTTGCTTCACATTCTTGAAAAGAACTGAGACAGCTACGAGAAT
* * * *
2331425 TGATTCTTGTCTTATTTAAGGTATGAACA-A-TTAAACGAAAACAGG-TAAAGAAAATATTCCCA
66 CGATTCTTGTCTTATTTAAGGTATGAACATATTTAAACGAAAACAGGCAAAAAAAAAGATTCCCA
* *
2331487 TGCAAAAGAAAATCATCCATATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTTCCTAATCAC
131 TGCAAAAAAAAATCATCCATATCATTTATCCTAAAGAGGAGAATATGTTTATAGTTCCTAATCAC
* * * * * * *
2331552 AAATTGAATGAAGATCATTACTAGAATTCATGTTTATCTCATTTGAGGCATGAACTTAGACTTTA
196 AAAATGAAAGAAGATCATTACTACAATCCAAGATTATCTCATTTGAGGCATAAACTTAGACTTTA
* *** * * ** * * *
2331617 TAAAATTTGGTGGGAAAAAAGCATTTCTTGCGAAATGAAAGCATCAATATGATACAACCTAATTA
261 CAAAAAACGGTGAGAAAAAAGCATTTCTTGCAAAACAAAAGCATCAATATGACACAACATAATGA
* * * * *
2331682 GAATACTACGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTTGTATGAGTATTCATGTTTGT
326 GAAGACTACGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTAT
* *
2331747 CTTATTTAAGGGACAAACTTTGATTC-CATCAAAAAAAGTGGAAAGAAAA-TCTTTTCTTGTGAC
391 CTTATTTAAGAGACAAACTTTGATTCTC-TCAAAAAAAGTGGAAAGAAAAGT-TTTTCTTGCGAC
* * *
2331810 ACCAAAGCATCAATGCCATGTTTCCAAATG-AGAGAATGTGTTTTGGCTTCCCAAACTTTAAAAG
454 ACCAAAGCATCAATGCCATGTATCCAAATGAAGAGAATGTGTTTT-GCTTCACAAACTTGAAAAG
* *
2331874 AA-TAGAGACTA-TTACGAGAATTGATCCTTGTCTTATTTAAGG
518 AACT-GAGAC-AGTTACGAGAATCGATCCTTATCTTATTTAAGG
2331916 AATTAACTTT
Statistics
Matches: 479, Mismatches: 72, Indels: 15
0.85 0.13 0.03
Matches are distributed among these distances:
558 16 0.03
559 362 0.76
560 14 0.03
562 1 0.00
564 86 0.18
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.32
Consensus pattern (562 bp):
ATCCTAATAAAGGGAAAGCGTATTTGCTTCACATTCTTGAAAAGAACTGAGACAGCTACGAGAAT
CGATTCTTGTCTTATTTAAGGTATGAACATATTTAAACGAAAACAGGCAAAAAAAAAGATTCCCA
TGCAAAAAAAAATCATCCATATCATTTATCCTAAAGAGGAGAATATGTTTATAGTTCCTAATCAC
AAAATGAAAGAAGATCATTACTACAATCCAAGATTATCTCATTTGAGGCATAAACTTAGACTTTA
CAAAAAACGGTGAGAAAAAAGCATTTCTTGCAAAACAAAAGCATCAATATGACACAACATAATGA
GAAGACTACGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTAT
CTTATTTAAGAGACAAACTTTGATTCTCTCAAAAAAAGTGGAAAGAAAAGTTTTTCTTGCGACAC
CAAAGCATCAATGCCATGTATCCAAATGAAGAGAATGTGTTTTGCTTCACAAACTTGAAAAGAAC
TGAGACAGTTACGAGAATCGATCCTTATCTTATTTAAGGTAC
Found at i:2332295 original size:159 final size:157
Alignment explanation
Indices: 2331631--2332772 Score: 426
Period size: 158 Copynumber: 7.2 Consensus size: 157
2331621 ATTTGGTGGG
* ** * ** * * * *
2331631 AAAAAAGCATTTCTTGCGAAATGAAAGCATCAATATGATACAACCTAATTAGAATACTACGTTTA
1 AAAAAAGCTTTTCTTGCGAAAACAAAGCATCAATATGATGCATTCTAATGAGAAGAATATGTTTA
* * * *
2331696 TGGTGCCTAATCTTGAAAAGAATGGGGATTTGTATGAGTATTCATGTTTGTCTTATTTAAGGGAC
66 TGGTGCCTAATCTTGAAAAGAAT-GAGATTAGTACGAGAATTCATGTTTGTCTTATTTAA-GGAC
* *
2331761 AAACTTTGATTCCATCAAAAAAAGTGGAA
129 AAACTTTGATTCTATCAAAAATAGTGGAA
* * * * * *** * * *
2331790 AGAAAATCTTTTCTTGTGACACCAAAGCATCAATGCCATG-TTTCCAAATGAG-AGAATGTGTTT
1 AAAAAAGCTTTTCTTGCGAAAACAAAGCATCAATATGATGCATT-CTAATGAGAAGAATATGTTT
* * * * * * * **
2331853 -TGGCTTCCCAAACTTTAAAAGAATAGAGACTATTACGAGAATTGATCCTTGTCTTATTTAAGGA
65 ATGG-TGCCTAATCTTGAAAAGAAT-GAGATTAGTACGAGAATTCATGTTTGTCTTATTTAAGGA
* **
2331917 -ATTAACTTTGATTTTAAGAAAAATAG-GGTAA
128 CA--AACTTTGATTCTATCAAAAATAGTGG-AA
* * * * ** * * * * ** * * *
2331948 ACAAATGATTTCCACGCAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
1 AAAAAAGCTTTTCTTGCGAAAACAAAGCATCAATATGATGCATTCTAATGAGAAGAATATGTTTA
* * ** * * * * * *
2332013 TAGTACCTAATC-ACAAAATGAATGAAGATCATTACTAAAATCCAT-TTTGTCTCT-TTTGAAGC
66 TGGTGCCTAATCTTGAAAA-GAATG-AGATTAGTACGAGAATTCATGTTTGTCT-TATTT-AAGG
* * *
2332075 ACGAACTTAGACTT-TA-CTAAAAATGGTAGG-A
127 ACAAACTTTGA-TTCTATC-AAAAATAGT-GGAA
* * *
2332106 AAAAAA-CCTTTCTTGCG-AAACAAAAGCATCAAAATGATGCATTCTAATGAGAAGACTATGTTT
1 AAAAAAGCTTTTCTTGCGAAAAC-AAAGCATCAATATGATGCATTCTAATGAGAAGAATATGTTT
* * *
2332169 ATGGTGCCTTATCTTGAAAAGAATCGGGATTAGTATC-AGTATTCATGTTTGTCTTATTTAAGAG
65 ATGGTGCCTAATCTTGAAAAGAAT-GAGATTAGTA-CGAGAATTCATGTTTGTCTTATTTAAG-G
2332233 ACAAACTTTGATTCTATCAAAAATAGTGGAA
127 ACAAACTTTGATTCTATCAAAAATAGTGGAA
* * * * * * *
2332264 AAAAAAGCTTTTCTTGCGACATCAAAGCATCAATGTCATGTATTCTAATGA-AGGGAATGTGTTT
1 AAAAAAGCTTTTCTTGCGAAAACAAAGCATCAATATGATGCATTCTAATGAGA-AGAATATGTTT
* * ** * ** *
2332328 -TGGCTTCAC-AATCTTG-AAAGAAACTAAGACAATTTTGAGAA-TCGAT-TCCTGTCTTATTTA
65 ATGG-TGC-CTAATCTTGAAAAG-AA-TGAGATTAGTACGAGAATTC-ATGT-TTGTCTTATTTA
** * *
2332388 AGGTA-AGAAAATTG-TTTTA-AAGGAAAATA--GGAA
124 AGG-ACA-AACTTTGATTCTATCA--AAAATAGTGGAA
* * * * * * ** * * * *
2332421 AAGAAAAGATTCTCATGC-AAAAGAAAATCATCAATATCATTTATCCTAAAGAAGAGGACT-TGT
1 AA-AAAAGCTTTTCTTGCGAAAA-CAAAGCATCAATATGATGCATTCTAATG-AGAAGAATATGT
* * * * * * * * *
2332484 TTATAGTGCCTAATCAT-AAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTTTTTTGAG
63 TTATGGTGCCTAATCTTGAAAA-GAATG-AGATTAGTACGAGAATTCATGTTTGTCTTATTTAAG
* * *
2332548 G-CTTGAACTTAGACTTC-ACCAAAAAT-GATGG-A
126 GAC--AAACTTTGA-TTCTATCAAAAATAG-TGGAA
* * * * * * *
2332580 AAAAAAGCCCTTT-TTGC-AAAACAAATACATCAGTATGATGTATCCTAAAGAGAAGACTATGTT
1 AAAAAAG-CTTTTCTTGCGAAAACAAA-GCATCAATATGATGCATTCTAATGAGAAGAATATGTT
* * * * *
2332643 TATGGTGCCTTATCTTGAAAAAAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAG
64 TATGGTGCCTAATCTTGAAAAGAAT-GAGATTAGTACGAGAATTCATGTTTGTCTTATTTAAG-G
* ** *
2332708 ACAAACTTTTATTCTATCAAAAACGGTAGAA
127 ACAAACTTTGATTCTATCAAAAATAGTGGAA
** * * *
2332739 GGAAAAGTTTTTCTTGCGACATCAAAGCATCAAT
1 AAAAAAGCTTTTCTTGCGAAAACAAAGCATCAAT
2332773 TTCATGTATC
Statistics
Matches: 706, Mismatches: 204, Indels: 146
0.67 0.19 0.14
Matches are distributed among these distances:
156 4 0.01
157 103 0.15
158 374 0.53
159 204 0.29
160 21 0.03
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.32
Consensus pattern (157 bp):
AAAAAAGCTTTTCTTGCGAAAACAAAGCATCAATATGATGCATTCTAATGAGAAGAATATGTTTA
TGGTGCCTAATCTTGAAAAGAATGAGATTAGTACGAGAATTCATGTTTGTCTTATTTAAGGACAA
ACTTTGATTCTATCAAAAATAGTGGAA
Found at i:2332704 original size:475 final size:473
Alignment explanation
Indices: 2331360--2337039 Score: 4012
Period size: 474 Copynumber: 11.9 Consensus size: 473
2331350 TTTAAGGTAC
* * * *
2331360 ATCCTAATGAAGGGAAAGTGTTTTTGCTTCACATTCTTGAAAAGAACTGAGAGAGCTACGAGAAT
1 ATCCTAATGAAGGGAATGTGTTTTGGCTTCACATTCTTGAAAAGAACTGAGACAGTTACGAGAAT
* * * * * *
2331425 TGATTCTTGTCTTATTTAAGGTATGAACA----ATTAAACGAAAACAGGTAAAGAAAATATTCCC
66 CGATTCTTGTCTTATTTAAGGTATGAACATTGTTTTAAAGGAAAATAGGCAAAGAAAAGATTCCC
* *
2331486 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTTCCTAATCA
131 ATGCAAAAGAAAATCATCCATATCATTTATCCTAATGAGGAGAATATGTTTATAGTTCCTAATCA
* * * *
2331551 CAAATTGAATGAAGATCATTACTAGAATTCATGTTTATCTCATTTGAGGCATGAACTTAGACTTT
196 CAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCATGAACTTAGACTTT
* * * * ** * ** *
2331616 A-TAAAATTTGGTGGGAAAAAAGCATTTCTTGCGAAATGAAAGCATCAATATGATACAACCTAAT
261 ACCAAAA-ATGGTGGAAAAAAAGCCTTT-TTGC-AAAACAAAACATCAATATGATGTATCCTAAT
* * * * *
2331680 TAGAATACTACGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTTGTATGAGTATTCATGTTT
323 GAGAAGACTATGTTTATGGTGCCTTATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTT
* * ** *
2331745 GTCTTATTTAAGGGACAAACTTTGATTCCATCAAAAAAAGTGGAAAGAAAA-TCTTTTCTTGTGA
388 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGT-TTTTCTTGCGA
* *
2331809 CACCAAAGCATCAATGCCATGT
452 CATCAAAGCATCAATGTCATGT
* * * * ** *
2331831 TTCCAAATG-AGAGAATGTGTTTTGGCTTCCCAAACTTTAAAAGAA-TAGAGACTA-TTACGAGA
1 ATCCTAATGAAGGGAATGTGTTTTGGCTTCACATTCTTGAAAAGAACT-GAGAC-AGTTACGAGA
* * * * * * * * *
2331893 ATTGATCCTTGTCTTATTTAAGGAATTAACTTTGATTTT-AAGAAAAATAGGGTAAACAAATGAT
64 ATCGATTCTTGTCTTATTTAAGGTATGAACATTG-TTTTAAAGGAAAATA-GGCAAAGAAAAGAT
* * * * * *
2331957 TTCCACGCAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTACCTA
127 TCCCATGCAAAAGAAAATCATCCATATCATTTATCCTAATGAGGAGAATATGTTTATAGTTCCTA
* * * * *
2332022 ATCACAAAATGAATGAAGATCATTACTAAAATCC-ATTTTGTCTCTTTTGAAGCACGAACTTAGA
192 ATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCATGAACTTAGA
* * * * *
2332086 CTTTACTAAAAATGGTAGGAAAAAAA-CCTTTCTTGCGAAACAAAAGCATCAAAATGATGCATTC
257 CTTTACCAAAAATGGT-GGAAAAAAAGCCTTT-TTGCAAAACAAAA-CATCAATATGATGTATCC
* *
2332150 TAATGAGAAGACTATGTTTATGGTGCCTTATCTTGAAAAGAATCGGGATTAGTATCAGTATTCAT
319 TAATGAGAAGACTATGTTTATGGTGCCTTATCTTGAAAAGAATGGGGATTAGTATGAGTATTCAT
** * *
2332215 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATAGTGGAAAAAAAAGCTTTTCTTG
384 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGTTTTTCTTG
2332280 CGACATCAAAGCATCAATGTCATGT
449 CGACATCAAAGCATCAATGTCATGT
* * * * **
2332305 ATTCTAATGAAGGGAATGTGTTTTGGCTTCACAATCTTG-AAAGAAACTAAGACAATTTTGAGAA
1 ATCCTAATGAAGGGAATGTGTTTTGGCTTCACATTCTTGAAAAG-AACTGAGACAGTTACGAGAA
* * * * *
2332369 TCGATTCCTGTCTTATTTAAGGTAAGAAAATTGTTTTAAAGGAAAATAGGAAAAGAAAAGATTCT
65 TCGATTCTTGTCTTATTTAAGGTATGAACATTGTTTTAAAGGAAAATAGGCAAAGAAAAGATTCC
* * * * *
2332434 CATGCAAAAGAAAATCATCAATATCATTTATCCTAAAGAAGAGGACT-TGTTTATAGTGCCTAAT
130 CATGCAAAAGAAAATCATCCATATCATTTATCCTAATGAGGA-GAATATGTTTATAGTTCCTAAT
* ** *
2332498 CATAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTTTTTTGAGGCTTGAACTTAGACT
194 CACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCATGAACTTAGACT
* * *
2332563 TCACCAAAAATGATGGAAAAAAAGCCCTTTTTGCAAAACAAATACATCAGTATGATGTATCCTAA
259 TTACCAAAAATGGTGGAAAAAAAG-CCTTTTTGCAAAACAAA-ACATCAATATGATGTATCCTAA
* *
2332628 AGAGAAGACTATGTTTATGGTGCCTTATCTTGAAAAAAATGGGGATTAGTATGAGTATTCATGTT
322 TGAGAAGACTATGTTTATGGTGCCTTATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGTT
* * *
2332693 TGTCTTATTTAAGAGACAAACTTTTATTCTATCAAAAACGGTAGAAGGAAAAGTTTTTCTTGCGA
387 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGTTTTTCTTGCGA
*
2332758 CATCAAAGCATCAATTTCATGT
452 CATCAAAGCATCAATGTCATGT
* * * *
2332780 ATCCTAATAAAGGGAAAGTATATTT-GCTTCACATTCTTGAAAAAAACTGAGACAGTTACGAGAA
1 ATCCTAATGAAGGGAATGTGT-TTTGGCTTCACATTCTTGAAAAGAACTGAGACAGTTACGAGAA
* * *
2332844 TCGATTCTTGTCTTATTTATGGTATGAACATTATTTTTAAA-GAAAATAGGCAATGAAAAGATTC
65 TCGATTCTTGTCTTATTTAAGGTATGAACATT-GTTTTAAAGGAAAATAGGCAAAGAAAAGATTC
* * * *
2332908 CCACGCAGAAGAAAATTATCCATATCGTTTATCCTAATGAGGAGAATATGTTTATAGTTCCTAAT
129 CCATGCAAAAGAAAATCATCCATATCATTTATCCTAATGAGGAGAATATGTTTATAGTTCCTAAT
* * * * * * *
2332973 CACAAAATGATTGAAGATCATTACTACAGTCCAAGATTGTCCCATTTGAGGCATAAATTTAGACT
194 CACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCATGAACTTAGACT
* * * * * * *
2333038 TTACAAAAAAGGGCGGGAAAAAAGCCTTCCTTGCGAAATAAAAGCATCAATATGATGTATCCTAA
259 TTACCAAAAATGGTGGAAAAAAAGCCTT-TTTGCAAAACAAAA-CATCAATATGATGTATCCTAA
* * * *
2333103 TGAGAAGACTATGTTTATGTTGCCTTATCCTGAAAAGAATGGGGATTAGTATAAGTATTCTTGTT
322 TGAGAAGACTATGTTTATGGTGCCTTATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGTT
* * * *
2333168 TGTTTTATTTAAGACACAAACTTTAATTCTATTAAAAACGGT-GAAAGGAAAAGTTTTTCTTGCG
387 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAA-GAAAAGTTTTTCTTGCG
* *
2333232 ACATTAAAGCTTCAATGTCATGT
451 ACATCAAAGCATCAATGTCATGT
* * *
2333255 ATCCTAATGAAGGGAATGTATTTTTGCTTCACATTCTTGAAAAGAACTGAGACAGTTACAAGAAT
1 ATCCTAATGAAGGGAATGTGTTTTGGCTTCACATTCTTGAAAAGAACTGAGACAGTTACGAGAAT
* * * * *
2333320 CGATTCTTGTCTTATTTATGCTATGAACATTATTTCAAAAGAAAATAGGCAAAGAAAAGATTCCC
66 CGATTCTTGTCTTATTTAAGGTATGAACATTGTTTTAAAGGAAAATAGGCAAAGAAAAGATTCCC
* *
2333385 ATGCAAATGAAAATCATCCATATCATTTATCCTAATGAGGAGAATATCTTTATAGTTCCTAATCA
131 ATGCAAAAGAAAATCATCCATATCATTTATCCTAATGAGGAGAATATGTTTATAGTTCCTAATCA
* * * *
2333450 CAAAATGAATGAATATCAATACTAGAATCCAAGTTTGTCTCATTTGAGGCACGGACTTAGACTTT
196 CAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCATGAACTTAGACTTT
* * * * * **
2333515 A-C--GAATTGT-G----AAA--C-----G------AAAGCATCAATATGGTATATCCTAAAAAG
261 ACCAAAAATGGTGGAAAAAAAGCCTTTTTGCAAAACAAAACATCAATATGATGTATCCTAATGAG
* * * * * *
2333559 AAGTCTATGTTTCTGATGCCTTATCCTGAAAAGAGTGGGGATTAGTATGAGTATTCATGTTTGCC
326 AAGACTATGTTTATGGTGCCTTATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTC
* * *
2333624 TTATTTAAGACACAAACTTTGATTCTATCAAAAACGGTGG-AAGCAAAGTTTTTCTTGCAACATC
391 TTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGTTTTTCTTGCGACATC
* *
2333688 AAAGCTTCAATGTCATGC
456 AAAGCATCAATGTCATGT
* * *
2333706 ATCCTAATGAAGGGAATGTGTTTTCGCTTCACATTCTTGAAAAGAACTGAGAGAGTTGCGAGAAT
1 ATCCTAATGAAGGGAATGTGTTTTGGCTTCACATTCTTGAAAAGAACTGAGACAGTTACGAGAAT
* ** * * ** ***** *** *
2333771 CGATTCTTATCTTATTTAAGG--T--ACATCCTAATGAAAGGAATGT-GTTTTTGCCTCACATT-
66 CGATTCTTGTCTTATTTAAGGTATGAACATTGT-TTTAAAGGAAAATAGGCAAAG-AAAAGATTC
* * * * * * * * *
2333830 -CTTG-AAAAGAATTGAGA-GAGTTACGAGAATCGATTCTTGTCTTATTTAAGGCATGAACA---
129 CCATGCAAAAGAA---A-ATCA--T-CCA-TATC-A-T-TTATCCTA-ATGAGG-A-GAATATGT
* * * **
2333889 TTAT--TT--TAAACA-AAAATAGGCAAAGAAAAGATTCCCATGCAAAAGAAAATCATCCATA-T
180 TTATAGTTCCTAATCACAAAAT--G-AATG--AAGA-T--CAT-TACTAG---A--ATCCA-AGT
* * ** * *** * * * * ** *
2333948 CATT-TATCCTAAAGAGGAGAATGTTTTTATAGTTCCTAATCACAAAT--T-G-AATGAAG-ATT
230 --TTGTCTCAT-TTGA-G-GCATGAACTTAGACTT--T-ACCAAAAATGGTGGAAAAAAAGCCTT
* * * ** * * * * * * * * *
2334007 GTTACTAGAATTC-ATGCTTATCTCATTTGAGGCATGAACTTAGACTTTATAA-AATATGGTGGG
287 TTTGC-A-AA-ACAAAAC--ATC-AATATGATG--T-ATCCTA-A--TGAGAAGACTAT-GT--T
* **** * * * * * * * * * *
2334070 AAAAAAGCATT-TCTTGCAAAATGAA--AGCATCAATATGATGCA-TCCTAATTAGAATACTATG
337 TATGGTGCCTTATCTTG-AAAA-GAATGGGGATTAGTATGA-GTATTCAT-GTTTG--T-CT-TA
* * * * * * * * **
2334131 TTTATG-G-C--GC-CTAATCCTGA--AGAGAATGG-GGATTAGTATGAGTATTCATGT-TTGTC
394 TTTAAGAGACAAACTTTGATTCT-ATCA-AAAACGGTGGA-AAG-AAAAGT-TT--T-TCTTG-C
* * * * * * *
2334187 TTA-TTTAAGGGA-CAAACTTTAAT-T
450 -GACATCAAAGCATC-AA-TGTCATGT
* ** * * *
2334211 CCATCATAAACAGTGGAAAGAAAATCTTTTCTTGTGACACCGAAGCATCAATGTCATGTTTCTT-
1 --ATCCT--A-A-T-G-AAGGGAAT-GTGT-TT-T------G--GCTTC-A---CA---TTCTTG
* *** * * ** *** * * *
2334275 AATGAGAGAA-TGTGTTTTGGCTTCCCA-AACTTTAAAAGATTAGAGAC-TA-TTACGAGAATCG
40 AA--A-AGAACTGAG--ACAG-TTACGAGAA---TCG---ATTCTTGTCTTATTTAAG-GTAT-G
* * * ** **
2334336 ATCATTGTCTTATTTAAGGGATGAACTTTG-ATTTTAAGAAAAATAAGGCAAACAAATGATTTAC
91 AACATTG---T-TTTAAAGGA--AAATAGGCA----AAG-------------A-AAA-GATTCCC
* * *
2334400 ATGCAAAAGAAAATCATCAATATCATTTATCCTAAT-ATGGAGAATGTGTTTATAGTACCTAATC
131 ATGCAAAAGAAAATCATCCATATCATTTATCCTAATGA-GGAGAATATGTTTATAGTTCCTAATC
* * * *
2334464 ACAAAATGAATGAAGATCATTACTAAAATCCATGTTTGTTTCTTTTGAGGCATGAACTTAGACTT
195 ACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCATGAACTTAGACTT
* * *
2334529 TACAAAAAATGGTAGGAAAAAAA-CCTTTCTTGCAAAACGAAAGCATCAATATGATGCATCCTAA
260 TACCAAAAATGGT-GGAAAAAAAGCCTTT-TTGCAAAAC-AAAACATCAATATGATGTATCCTAA
* * *
2334593 TGAGAAGACTATGCTTATGGTG-CTTAATCCTGAAAAGAATAGGGATTAGTATGAGTATTCATGT
322 TGAGAAGACTATGTTTATGGTGCCTT-ATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGT
* *
2334657 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAA-AAAAGCCTTTT-TTGC
386 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAG-TTTTTCTTGC
*
2334720 GACATCAAAGCATCAATATCATGT
450 GACATCAAAGCATCAATGTCATGT
* * * **
2334744 ATCCTAATAAAGGGAATGTGTTTTGGCTTCACAATT-TTG-AAAGAAACTAAGACAATTTTGAGA
1 ATCCTAATGAAGGGAATGTGTTTTGGCTTCAC-ATTCTTGAAAAG-AACTGAGACAGTTACGAGA
* * *
2334807 ATCAATTCTTATCTTATTTAAGGTAAGAACATTGTTTTAAAGGAAAATAGGCAAAGAAAAGATTC
64 ATCGATTCTTGTCTTATTTAAGGTATGAACATTGTTTTAAAGGAAAATAGGCAAAGAAAAGATTC
* * * * *
2334872 CCATGCAAAAGAAAATCATCAATATCATTTATCCTAAAGAAGAGAACATGTTTATAGTGCCTAAT
129 CCATGCAAAAGAAAATCATCCATATCATTTATCCTAATGAGGAGAATATGTTTATAGTTCCTAAT
*
2334937 CACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCTTTTGAGGCATGAACTTAGACT
194 CACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCATGAACTTAGACT
* * * **
2335002 TTGCCGAAAATGGTGGAAAAAAATCCATTTTTGCAAAACGAATGCATCAATATGATGTATCCTAA
259 TTACCAAAAATGGTGGAAAAAAAGCC-TTTTTGCAAAAC-AAAACATCAATATGATGTATCCTAA
* * ** * *
2335067 AGAGAAGACTACGTTTATGGTGTGTTATCCTGAAAAGAATGTGGATTAGTATGAGTATTCATGTT
322 TGAGAAGACTATGTTTATGGTGCCTTATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGTT
* * * * *
2335132 TGTCTTATTTATGAGACAAACTTTGATACTATCAAAAATGGTGGAAGGAAAAGTTTTTCTTGGGA
387 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGTTTTTCTTGCGA
* *
2335197 CACCAAAGCATCAATTTCATGT
452 CATCAAAGCATCAATGTCATGT
* * * * *
2335219 A-CCTGAATCAAGGGAATGTG-TTTGTC-TCCCAGTC-TCATAAAGAA-TG-GACATTGTTACGA
1 ATCCT-AATGAAGGGAATGTGTTTTGGCTTCACATTCTTGA-AAAGAACTGAGACA--GTTACGA
* * ** * * * * *
2335278 GAATAGATGCTTACCTTATTTAGGGGATGAACTTTGATTTT-AAGAAAAATAGGGCAAAGAAAAT
62 GAATCGATTCTTGTCTTATTTAAGGTATGAACATTG-TTTTAAAGGAAAATA-GGCAAAGAAAAG
* * * ** * * * * *
2335342 ATTTCCAGGCAAAAGAAAATAATAAATATCATTTATACTAATGAGAAAAATGTGTTTATAGTGCC
125 ATTCCCATGCAAAAGAAAATCATCCATATCATTTATCCTAATGAGGAGAATATGTTTATAGTTCC
* * * * * *
2335407 TAATCACAAAGTTAACGAAAATCATTACTAGAATCCATGTTTGTCTCTTTTGAGGCATGAACTTA
190 TAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCATGAACTTA
* * * * * * ** * *
2335472 GACTTTA-AAAAAATCGTGGGAAAAGAGCTTTTCTTGTGAAATGAAAGCGTCAATATGATGTATC
255 GACTTTACCAAAAATGGTGGAAAAAAAGCCTTT-TTG-CAAAACAAAACATCAATATGATGTATC
* * * ** *
2335536 CTAAAGAGAAGACTATGTTTATGTTGCCTCATCCGGAAAAGAATGGGGATTAGTATGAATATTCA
318 CTAATGAGAAGACTATGTTTATGGTGCCTTATCTTGAAAAGAATGGGGATTAGTATGAGTATTCA
* * * *
2335601 TGTTTGTCTTATTTAATAGACAAACTTTGATTCTATCAGAAACTGTGGAAGGAAAAGTTTTTCTT
383 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGTTTTTCTT
* *
2335666 GCGACCTCGAAA-CATCAATTTCATGT
448 GCGACATC-AAAGCATCAATGTCATGT
* * * * *
2335692 ATCC---T-------A----TTTTGGCTCCA-AATCTTGTAAAGAA-TAGAGA-TGTTGCGAGAA
1 ATCCTAATGAAGGGAATGTGTTTTGGCTTCACATTCTTGAAAAGAACT-GAGACAGTTACGAGAA
* ** * * ** *
2335740 TTGAAGCTTATTTTATTTAAGGGGTGAACTTTGATTTT-AAGGAAAATAGGGCAAAGAAAAGATT
65 TCGATTCTTGTCTTATTTAAGGTATGAACATTG-TTTTAAAGGAAAATA-GGCAAAGAAAAGATT
* * * * * * * *
2335804 TCAATGCAAAAGAAAATGATCGATATCTTTTATCCTAATGAGGAGAATGTGTTTATTGTGCCTAA
128 CCCATGCAAAAGAAAATCATCCATATCATTTATCCTAATGAGGAGAATATGTTTATAGTTCCTAA
* * * *
2335869 TCACAAAATGAATGAAGATCATTACTACAATCCATGTTTGTCTCTTTTGAGGCACGAACTTAGAC
193 TCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCATGAACTTAGAC
* * *
2335934 TTTACAAAAAATGGTGG-GAAAAAGCCTTTCTTGCAAAACAAAAGCATCAATATGATGCATCCTA
258 TTTACCAAAAATGGTGGAAAAAAAGCCTTT-TTGCAAAACAAAA-CATCAATATGATGTATCCTA
** * *
2335998 ATGAGAAGACTACATTTATGGTGCCTTATCTTGAAAGGAATGGGGATTTGTATGAGCT-TTCATG
321 ATGAGAAGACTATGTTTATGGTGCCTTATCTTGAAAAGAATGGGGATTAGTATGAG-TATTCATG
* * *
2336062 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAAGGAAGAGTTTTTCTTGC
385 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGTTTTTCTTGC
* * *
2336127 AACCTCAAAGCATCAATTTCATGT
450 GACATCAAAGCATCAATGTCATGT
* * * * * ** *
2336151 ATCCGAATGAAGGGAATGTGTTTT-TC-TCCCAATCTAGTAAAA-AA-TGGAGATTGTTATGAGA
1 ATCCTAATGAAGGGAATGTGTTTTGGCTTCACATTCTTG-AAAAGAACT-GAGACAGTTACGAGA
* * * * * * * *
2336212 ATTGATGCTTCTCTTATTTACGGCATGAACTTTGATTTT-AAGGAAAAAAGGGAAAAGAAAAGAT
64 ATCGATTCTTGTCTTATTTAAGGTATGAACATTG-TTTTAAAGGAAAATA-GGCAAAGAAAAGAT
* * * * * *
2336276 TTCCATGCAAAAGAAAATCATCAATATCATTTATCATAATGAGGAGAATGTGTTTATGGTGCCTA
127 TCCCATGCAAAAGAAAATCATCCATATCATTTATCCTAATGAGGAGAATATGTTTATAGTTCCTA
* * * * *** *
2336341 ATCACAAAATGAATGAAGATCATTACAAGAATCCATGTTTGTCTCTTTTGATGCCCAAACTTCGA
192 ATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCATGAACTTAGA
* * * * *
2336406 ATTT-CTAAAAAATGGTGGAAAAAAAGCCTTCCTTGCGAAACGAAAGCATCAATATGATGTATCC
257 CTTTAC-CAAAAATGGTGGAAAAAAAGCCTT-TTTGCAAAAC-AAAACATCAATATGATGTATCC
* * * * *
2336470 TAATGAGAAGACTATGTTTATGTTGCCTTATCCTAAAAAGAATAGAGATTAGTATGAGTATTCAT
319 TAATGAGAAGACTATGTTTATGGTGCCTTATCTTGAAAAGAATGGGGATTAGTATGAGTATTCAT
* * ** * * *
2336535 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTAACAAAAATGAAGGAAGGAAAAATTTTTCATG
384 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGTTTTTCTTG
2336600 CGACATCAAAGCATCAATGTCATGT
449 CGACATCAAAGCATCAATGTCATGT
* * * * * * * *
2336625 ATCCTAATGAAGGGGATGTGCTTTGGGTTCACAATCTTGAAAAGAATTAAGATAGTTACAAGAAT
1 ATCCTAATGAAGGGAATGTGTTTTGGCTTCACATTCTTGAAAAGAACTGAGACAGTTACGAGAAT
* * * * **
2336690 CAATTCTTGTCTTATTTAAGGTATGAACATTATTTTAAAGGAAAATAGGCAAAGAAAAAAGTCTA
66 CGATTCTTGTCTTATTTAAGGTATGAACATTGTTTTAAAGGAAAATAGGCAAAGAAAAGATTCCC
* * * * * * *
2336755 ACGCAAAAGAAAATCTTCAATA-CATTTATCCTAATAAGGAGAATATATTTGTAGTGCCTAATCA
131 ATGCAAAAGAAAATCATCCATATCATTTATCCTAATGAGGAGAATATGTTTATAGTTCCTAATCA
* * * * * *
2336819 CAAAAGGAATGAAGACCATTAGTATAATCCAAGTTTGTCTCATTTGAGGTACGAACTTAGACTTT
196 CAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCATGAACTTAGACTTT
* ** * * *
2336884 A-CAAAACTTGGT-GAGAAAAAAGCCTTTCTTGTGAAACGAAAGCATCAGTATGACGTATCCTAA
261 ACCAAAA-ATGGTGGA-AAAAAAGCCTTT-TTGCAAAAC-AAAACATCAATATGATGTATCCTAA
* * * * *
2336947 AGAGAAGACTATGTTTATGGTGCCCTATCCT-AAAAAAATTGGGGATTAGTATGAGTATTCATGA
322 TGAGAAGACTATGTTTATGGTGCCTTATCTTGAAAAGAA-TGGGGATTAGTATGAGTATTCATGT
*
2337011 TTGTCTTATTTAAAAGACAAACTTTGATT
386 TTGTCTTATTTAAGAGACAAACTTTGATT
2337040 TCATCAGAAA
Statistics
Matches: 4153, Mismatches: 754, Indels: 601
0.75 0.14 0.11
Matches are distributed among these distances:
445 6 0.00
446 3 0.00
447 7 0.00
448 14 0.00
449 2 0.00
450 6 0.00
451 121 0.03
452 120 0.03
453 10 0.00
454 1 0.00
455 13 0.00
456 5 0.00
457 1 0.00
458 15 0.00
459 353 0.08
460 27 0.01
461 3 0.00
462 4 0.00
463 1 0.00
464 6 0.00
465 6 0.00
466 4 0.00
467 4 0.00
468 9 0.00
469 2 0.00
470 69 0.02
471 15 0.00
472 28 0.01
473 450 0.11
474 1177 0.28
475 1103 0.27
476 78 0.02
477 1 0.00
489 6 0.00
491 3 0.00
492 8 0.00
493 1 0.00
494 9 0.00
495 5 0.00
496 1 0.00
497 3 0.00
498 19 0.00
499 30 0.01
500 22 0.01
501 7 0.00
502 3 0.00
503 5 0.00
504 15 0.00
505 11 0.00
506 7 0.00
507 7 0.00
508 2 0.00
509 1 0.00
510 2 0.00
511 2 0.00
512 1 0.00
513 7 0.00
514 6 0.00
515 2 0.00
516 2 0.00
522 1 0.00
523 2 0.00
524 6 0.00
525 7 0.00
527 1 0.00
528 3 0.00
529 1 0.00
530 2 0.00
531 9 0.00
532 9 0.00
533 13 0.00
534 14 0.00
535 8 0.00
536 2 0.00
537 11 0.00
538 17 0.00
539 31 0.01
540 13 0.00
541 5 0.00
542 1 0.00
543 4 0.00
544 9 0.00
545 1 0.00
546 7 0.00
547 22 0.01
548 4 0.00
549 16 0.00
550 7 0.00
551 6 0.00
553 2 0.00
556 2 0.00
557 6 0.00
558 2 0.00
559 4 0.00
560 14 0.00
561 1 0.00
562 5 0.00
563 4 0.00
564 7 0.00
565 6 0.00
566 2 0.00
567 5 0.00
569 3 0.00
570 7 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.32
Consensus pattern (473 bp):
ATCCTAATGAAGGGAATGTGTTTTGGCTTCACATTCTTGAAAAGAACTGAGACAGTTACGAGAAT
CGATTCTTGTCTTATTTAAGGTATGAACATTGTTTTAAAGGAAAATAGGCAAAGAAAAGATTCCC
ATGCAAAAGAAAATCATCCATATCATTTATCCTAATGAGGAGAATATGTTTATAGTTCCTAATCA
CAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCATGAACTTAGACTTT
ACCAAAAATGGTGGAAAAAAAGCCTTTTTGCAAAACAAAACATCAATATGATGTATCCTAATGAG
AAGACTATGTTTATGGTGCCTTATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTC
TTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGTTTTTCTTGCGACATC
AAAGCATCAATGTCATGT
Found at i:2333399 original size:950 final size:941
Alignment explanation
Indices: 2331360--2337035 Score: 4340
Period size: 949 Copynumber: 5.9 Consensus size: 941
2331350 TTTAAGGTAC
* * *
2331360 ATCCTAATGAAGGGAAAGTGTTTTTGCTTCACATTCTTGAAAAGAACTGAGAGAGCTACGAGAAT
1 ATCCTAATGAAGGGAATGTGTTTTTGCTTCACATTCTTGAAAAGAACTGAGACAGTTACGAGAAT
* * * * *
2331425 TGATTCTTGTCTTATTTAAGGTATGAACA--A-TTAAACGAAAACAGGTAAAGAAAATATTCCCA
66 CGATTCTTGTCTTATTTAAGGTATGAACATTATTTAAAAGAAAATAGGAAAAGAAAAGATTCCCA
*
2331487 TGCAAAAGAAAATCATCCATATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTTCCTAATCAC
131 TGCAAAAGAAAATCATCCATATCATTTATCCTAAAGAGGAGAATATGTTTATAGTTCCTAATCAC
* * * *
2331552 AAATTGAATGAAGATCATTACTAGAATTCATGTTTATCTCATTTGAGGCATGAACTTAGACTTTA
196 AAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCATGAACTTAGACTTTA
* * ** * * * **
2331617 TAAAATTTGGTGGGAAAAAAGCATTTCTTGCGAAATGAAAGCATCAATATGATACAACCTAATTA
261 CAAAA-TT-GT-GGAAAAAAGCCTTT-TTGC-AAAACAAATCATC-ATATGATATATCCTAAAAA
* * * *
2331682 GAATACTACGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTTGTATGAGTATTCATGTTTGT
320 GAAGACTATGTTTATGGTGCCTTATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGT
* * ** *
2331747 CTTATTTAAGGGACAAACTTTGATTCCATCAAAAAAAGTGGAAAGAAAA-TCTTTTCTTGTGACA
385 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGG-AAGAAAAGT-TTTTCTTGCGACA
* * * * * * * * ** *
2331811 CCAAAGCATCAATGCCATGTTTCCAAATGAGAGAATGTGTTTTGGCTTCCCAAACTTTAAAAGAA
448 TCAAAGCATCAATGTCATGTATCCTAATAAGGGAATGTGTTTTCGCTTCACATTCTTGAAAAGAA
* * * * *
2331876 -TAGAGACTA-TTACGAGAATTGATCCTTGTCTTATTTAAGGAATTAACTTTGATTTTAAGAAAA
513 CT-GAGAC-AGTTACGAGAATCGATTCTTGTCTTATTTAAGGTATGAACATTGATTTTAAGAAAA
* * *
2331939 ATAGGGTAAACAAATGATTTCCACGCAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGA
576 ATAGGGCAAACAAAAGATTCCCACGCAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGA
* ** * *
2332004 ATGTGTTTATAGTACCTAATCACAAAATGAATGAAGATCATTACTAAAATCCATTTTGTCTCTTT
641 ATATGTTTATAGTACCTAATCACAAAATGAATGAAGATCATTACTAAAATCCAGATTGTCCCATT
* * * * *
2332069 TGAAGCACGAACTTAGACTTTACTAAAAATGGTAGGAAAAAAACCTTTCTTGCGAAACAAAAGCA
706 TGAAGCACAAACTTAGACTTTACAAAAAAGGGCAGGAAAAAAACCTTCCTTGCGAAACAAAAGCA
* *
2332134 TCAAAATGATGCATTCTAATGAGAAGACTATGTTTATGGTGCCTTATCTTGAAAAGAATCGGGAT
771 TCAAAATGATGCATCCTAATGAGAAGACTATGTTTATGGTGCCTTATCCTGAAAAGAATCGGGAT
* * * *
2332199 TAGTATCAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATAGTGGAA
836 TAGTATAAGTATTCATGTTTGTCTTATTTAAGACACAAACTTTAATTCTATCAAAAACAGTGGAA
2332264 AAAAAAGCTTTTCTTGCGACATCAAAGCATCAATGTCATGT
901 AAAAAAGCTTTTCTTGCGACATCAAAGCATCAATGTCATGT
* * * * * **
2332305 ATTCTAATGAAGGGAATGTGTTTTGGCTTCACAATCTTG-AAAGAAACTAAGACAATTTTGAGAA
1 ATCCTAATGAAGGGAATGTGTTTTTGCTTCACATTCTTGAAAAG-AACTGAGACAGTTACGAGAA
* * * * * *
2332369 TCGATTCCTGTCTTATTTAAGGTAAGAAAATTGTTTTAAAGGAAAATAGGAAAAGAAAAGATTCT
65 TCGATTCTTGTCTTATTTAAGGTATGAACATT-ATTTAAAAGAAAATAGGAAAAGAAAAGATTCC
* * * *
2332434 CATGCAAAAGAAAATCATCAATATCATTTATCCTAAAGAAGAGGACT-TGTTTATAGTGCCTAAT
129 CATGCAAAAGAAAATCATCCATATCATTTATCCTAAAGAGGA-GAATATGTTTATAGTTCCTAAT
* ** *
2332498 CATAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTTTTTTGAGGCTTGAACTTAGACT
193 CACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCATGAACTTAGACT
* * *
2332563 TCACCAAAAATGATGGAAAAAAAGCCCTTTTTGCAAAACAAATACATCAGTATGATGTATCCTAA
258 TTA-CAAAATTG-TGG-AAAAAAG-CCTTTTTGCAAAACAAAT-CATCA-TATGATATATCCTAA
* *
2332628 AGAGAAGACTATGTTTATGGTGCCTTATCTTGAAAAAAATGGGGATTAGTATGAGTATTCATGTT
317 AAAGAAGACTATGTTTATGGTGCCTTATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGTT
* *
2332693 TGTCTTATTTAAGAGACAAACTTTTATTCTATCAAAAACGGTAGAAGGAAAAGTTTTTCTTGCGA
382 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAA-GAAAAGTTTTTCTTGCGA
* * *
2332758 CATCAAAGCATCAATTTCATGTATCCTAATAAAGGGAAAGTATATTT-GCTTCACATTCTTGAAA
446 CATCAAAGCATCAATGTCATGTATCCTAAT-AAGGGAATGTGT-TTTCGCTTCACATTCTTGAAA
* *
2332822 AAAACTGAGACAGTTACGAGAATCGATTCTTGTCTTATTTATGGTATGAACATT-ATTTTTAA-A
509 AGAACTGAGACAGTTACGAGAATCGATTCTTGTCTTATTTAAGGTATGAACATTGA-TTTTAAGA
** * * * * *
2332885 GAAAATA-GGCAATGAAAAGATTCCCACGCAGAAGAAAATTATCCATATCGTTTATCCTAATGAG
573 -AAAATAGGGCAAACAAAAGATTCCCACGCAAAAAAAAATCATCAATATCATTTATCCTAATGAG
* * * *
2332949 GAGAATATGTTTATAGTTCCTAATCACAAAATGATTGAAGATCATTACTACAGTCCAAGATTGTC
637 GAGAATATGTTTATAGTACCTAATCACAAAATGAATGAAGATCATTACTAAAATCC-AGATTGTC
* * * * * *
2333014 CCATTTGAGGCATAAATTTAGACTTTACAAAAAAGGGCGGGAAAAAAGCCTTCCTTGCGAAATAA
701 CCATTTGAAGCACAAACTTAGACTTTACAAAAAAGGGCAGGAAAAAAACCTTCCTTGCGAAACAA
* * * *
2333079 AAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGTTGCCTTATCCTGAAAAGAATG
766 AAGCATCAAAATGATGCATCCTAATGAGAAGACTATGTTTATGGTGCCTTATCCTGAAAAGAATC
* * * *
2333144 GGGATTAGTATAAGTATTCTTGTTTGTTTTATTTAAGACACAAACTTTAATTCTATTAAAAACGG
831 GGGATTAGTATAAGTATTCATGTTTGTCTTATTTAAGACACAAACTTTAATTCTATCAAAAACAG
* * * *
2333209 T-GAAAGGAAAAGTTTTTCTTGCGACATTAAAGCTTCAATGTCATGT
896 TGGAAA-AAAAAGCTTTTCTTGCGACATCAAAGCATCAATGTCATGT
* *
2333255 ATCCTAATGAAGGGAATGTATTTTTGCTTCACATTCTTGAAAAGAACTGAGACAGTTACAAGAAT
1 ATCCTAATGAAGGGAATGTGTTTTTGCTTCACATTCTTGAAAAGAACTGAGACAGTTACGAGAAT
* * *
2333320 CGATTCTTGTCTTATTTATGCTATGAACATTATTTCAAAAGAAAATAGGCAAAGAAAAGATTCCC
66 CGATTCTTGTCTTATTTAAGGTATGAACATTATTT-AAAAGAAAATAGGAAAAGAAAAGATTCCC
* * *
2333385 ATGCAAATGAAAATCATCCATATCATTTATCCTAATGAGGAGAATATCTTTATAGTTCCTAATCA
130 ATGCAAAAGAAAATCATCCATATCATTTATCCTAAAGAGGAGAATATGTTTATAGTTCCTAATCA
* * * *
2333450 CAAAATGAATGAATATCAATACTAGAATCCAAGTTTGTCTCATTTGAGGCACGGACTTAGACTTT
195 CAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCATGAACTTAGACTTT
* * * *
2333515 AC-GAATTGT-G---AAA--C-----G-AAAGC--ATCA--ATATGGTATATCCTAAAAAGAAGT
260 ACAAAATTGTGGAAAAAAGCCTTTTTGCAAAACAAATCATCATATGATATATCCTAAAAAGAAGA
* * * * *
2333563 CTATGTTTCTGATGCCTTATCCTGAAAAGAGTGGGGATTAGTATGAGTATTCATGTTTGCCTTAT
325 CTATGTTTATGGTGCCTTATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTAT
* * *
2333628 TTAAGACACAAACTTTGATTCTATCAAAAACGGTGGAAGCAAAGTTTTTCTTGCAACATCAAAGC
390 TTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGAAAAGTTTTTCTTGCGACATCAAAGC
* *
2333693 TTCAATGTCATGCATCCTAATGAAGGGAATGTGTTTTCGCTTCACATTCTTGAAAAGAACTGAGA
455 ATCAATGTCATGTATCCTAAT-AAGGGAATGTGTTTTCGCTTCACATTCTTGAAAAGAACTGAGA
* * * * *
2333758 GAGTTGCGAGAATCGATTCTTATCTTATTTAAGGTACATCCTAATGAAAGGAATGTGTTTTTGCC
519 CAGTTACGAGAATCGATTCTTGTCTTATTTAAGG-------T-ATG-AA--CAT-TG-ATTT---
** * ** ** *** ** *
2333823 TCACATTCTTGAAAAGAATTGAGAGAG-TTACGAGAATCGATT--CTTGTCTTATTTAAGGCATG
568 T-A-A-----G-AAA-AA-T-AG-G-GCAAAC-A-AA-AGATTCCCACG-CAAAAAAAAATCATC
* * * ** * *** * * * * *
2333885 AACATTATTTTAAACAAAAAT-AGGCAAAGAA-AAGATTCCCA-T-GC-AA-AAGAAAAT-CATC
616 AATATCA-TTT-ATC-CTAATGAGG---AGAATATG-TTTATAGTACCTAATCACAAAATGAATG
* * ** * *** * * * *
2333943 CATATCATTTATCCTAAAGA-GGAGAATGTTTTTATAGTTCCTAATCACAAATTGAATGAAGATT
674 AAGATCA-TTA--CTAAA-ATCCAGATTG-TCCCAT--TT--GAAGCACAAACT---T--AGACT
* ** ** *
2334007 GTTACTAGAATTCATGCTTATCTCATTTGAGGCATGAACTTAGACTTTATAAAATAT-GGTGGGA
725 -TTAC-A-AA---A-----A----A---G-GGCAGGAA---A-A----A-AACCT-TCCTTGCG-
* * *
2334071 AAAAAGCATTTCTTGCAAAATGAAAGCATCAATATGATGCATCCTAATTAGAATACTATGTTTAT
760 ---AA--A-------C---A--AAAGCATCAAAATGATGCATCCTAATGAGAAGACTATGTTTAT
* * * * * **
2334136 GGCGCCTAATCCTGAAGAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGGGACA
808 GGTGCCTTATCCTGAAAAGAATCGGGATTAGTATAAGTATTCATGTTTGTCTTATTTAAGACACA
* * * * * * *
2334201 AACTTTAATTCCATCATAAACAGTGGAAAGAAAATCTTTTCTTGTGACACCGAAGCATCAATGTC
873 AACTTTAATTCTATCAAAAACAGTGGAAAAAAAAGCTTTTCTTGCGACATCAAAGCATCAATGTC
2334266 ATGT
938 ATGT
* * * * * ** * *
2334270 TTCTTAATG-AGAGAATGTGTTTTGGCTTCCCAAACTTTAAAAG-ATTAGAGACTA-TTACGAGA
1 ATCCTAATGAAGGGAATGTGTTTTTGCTTCACATTCTTGAAAAGAACT-GAGAC-AGTTACGAGA
* * * * * *
2334332 ATCGA-TCATTGTCTTATTTAAGGGATGAACTTTGATTT-TAAGAAAAATAAGGCAAACAAATGA
64 ATCGATTC-TTGTCTTATTTAAGGTATGAACATT-ATTTAAAAG-AAAAT-AGGAAAAGAAAAGA
** * * * *
2334395 TTTACATGCAAAAGAAAATCATCAATATCATTTATCCTAATA-TGGAGAATGTGTTTATAGTACC
125 TTCCCATGCAAAAGAAAATCATCCATATCATTTATCCTAA-AGAGGAGAATATGTTTATAGTTCC
* * * *
2334459 TAATCACAAAATGAATGAAGATCATTACTAAAATCCATGTTTGTTTCTTTTGAGGCATGAACTTA
189 TAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCATGAACTTA
* * * **
2334524 GACTTTACAAAAAATGGTAGGAAAAAAACCTTTCTTGCAAAACGAAAGCATCAATATGATGCATC
254 GACTTTAC--AAAATTGT-GGAAAAAAGCCTTT-TTGCAAAAC-AAATCATC-ATATGATATATC
** * * *
2334589 CTAATGAGAAGACTATGCTTATGGTG-CTTAATCCTGAAAAGAATAGGGATTAGTATGAGTATTC
313 CTAAAAAGAAGACTATGTTTATGGTGCCTT-ATCTTGAAAAGAATGGGGATTAGTATGAGTATTC
* * *
2334653 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAAAAAGCCTTTT-T
377 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGAAAAG-TTTTTCT
* *
2334717 TGCGACATCAAAGCATCAATATCATGTATCCTAATAAAGGGAATGTGTTTTGGCTTCACAATT-T
441 TGCGACATCAAAGCATCAATGTCATGTATCCTAAT-AAGGGAATGTGTTTTCGCTTCAC-ATTCT
* * ** * * *
2334781 TG-AAAGAAACTAAGACAATTTTGAGAATCAATTCTTATCTTATTTAAGGTAAGAACATTG-TTT
504 TGAAAAG-AACTGAGACAGTTACGAGAATCGATTCTTGTCTTATTTAAGGTATGAACATTGATTT
* * * *
2334844 TAAAGGAAAATA-GGCAAAGAAAAGATTCCCATGCAAAAGAAAATCATCAATATCATTTATCCTA
568 T-AAGAAAAATAGGGCAAACAAAAGATTCCCACGCAAAAAAAAATCATCAATATCATTTATCCTA
* * * * * *
2334908 AAGAAGAGAACATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGT
632 ATGAGGAGAATATGTTTATAGTACCTAATCACAAAATGAATGAAGATCATTACTAAAATCC-AGA
* * * ** * ** * * *
2334973 TTGTCTCTTTTGAGGCATGAACTTAGACTTTGCCGAAAATGG-TGGAAAAAAATCCATT-TTTGC
696 TTGTCCCATTTGAAGCACAAACTTAGACTTTACAAAAAAGGGCAGGAAAAAAA-CC-TTCCTTGC
* * * * * * * **
2335036 AAAACGAATGCATCAATATGATGTATCCTAAAGAGAAGACTACGTTTATGGTGTGTTATCCTGAA
759 GAAACAAAAGCATCAAAATGATGCATCCTAATGAGAAGACTATGTTTATGGTGCCTTATCCTGAA
* * * * *
2335101 AAGAAT-GTGGATTAGTATGAGTATTCATGTTTGTCTTATTTATGAGACAAACTTTGATACTATC
824 AAGAATCG-GGATTAGTATAAGTATTCATGTTTGTCTTATTTAAGACACAAACTTTAATTCTATC
** ** * * * *
2335165 AAAAATGGTGGAAGGAAAAGTTTTTCTTGGGACACCAAAGCATCAATTTCATGT
888 AAAAACAGTGGAAAAAAAAGCTTTTCTTGCGACATCAAAGCATCAATGTCATGT
* * * * *
2335219 A-CCTGAATCAAGGGAATGTGTTTGT-C-TCCCAGTC-TCATAAAGAA-TG-GACATTGTTACGA
1 ATCCT-AATGAAGGGAATGTGTTTTTGCTTCACATTCTTGA-AAAGAACTGAGACA--GTTACGA
* * ** * * * * * *
2335278 GAATAGATGCTTACCTTATTTAGGGGATGAACTTTGATTT-TAAGAAAAATAGGGCAAAGAAAAT
62 GAATCGATTCTTGTCTTATTTAAGGTATGAACATT-ATTTAAAAG-AAAATA-GGAAAAGAAAAG
* * * ** * * * * * *
2335342 ATTTCCAGGCAAAAGAAAATAATAAATATCATTTATACTAATGAGAAAAATGTGTTTATAGTGCC
124 ATTCCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAAGAGGAGAATATGTTTATAGTTCC
* * * * * *
2335407 TAATCACAAAGTTAACGAAAATCATTACTAGAATCCATGTTTGTCTCTTTTGAGGCATGAACTTA
189 TAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCATGAACTTA
* * * * * ** * * *
2335472 GACTTTAAAAAAATCGTGGGAAAAGAGCTTTTCTTGTGAAATGAAAGCGTCAATATGATGTATCC
254 GACTTT-ACAAAATTGT-GGAAAAAAGCCTTT-TTG-CAAAACAAATCATC-ATATGATATATCC
* * * ** *
2335537 TAAAGAGAAGACTATGTTTATGTTGCCTCATCCGGAAAAGAATGGGGATTAGTATGAATATTCAT
314 TAAAAAGAAGACTATGTTTATGGTGCCTTATCTTGAAAAGAATGGGGATTAGTATGAGTATTCAT
* * *
2335602 GTTTGTCTTATTTAATAGACAAACTTTGATTCTATCAGAAACTGTGGAAGGAAAAGTTTTTCTTG
379 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAA-GAAAAGTTTTTCTTG
* * * * * *
2335667 CGACCTCGAAA-CATCAATTTCATGTATCC---T------A----TTTTGGCTCCA-AATCTTGT
443 CGACATC-AAAGCATCAATGTCATGTATCCTAATAAGGGAATGTGTTTTCGCTTCACATTCTTGA
* * * ** * * ** *
2335717 AAAGAA-TAGAGA-TGTTGCGAGAATTGAAGCTTATTTTATTTAAGGGGTGAACTTTGATTTTAA
507 AAAGAACT-GAGACAGTTACGAGAATCGATTCTTGTCTTATTTAAGGTATGAACATTGATTTTAA
* * * * * * * * *
2335780 GGAAAATAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATGATCGATATCTTTTATCCTAATGA
571 GAAAAATAGGGCAAACAAAAGATTCCCACGCAAAAAAAAATCATCAATATCATTTATCCTAATGA
* * * * *
2335845 GGAGAATGTGTTTATTGTGCCTAATCACAAAATGAATGAAGATCATTACTACAATCCATGTTTGT
636 GGAGAATATGTTTATAGTACCTAATCACAAAATGAATGAAGATCATTACTAAAATCCA-GATTGT
* * * * * * * * * *
2335910 CTCTTTTGAGGCACGAACTTAGACTTTACAAAAAATGG-TGGGAAAAAGCCTTTCTTGCAAAACA
700 CCCATTTGAAGCACAAACTTAGACTTTACAAAAAAGGGCAGGAAAAAAACCTTCCTTGCGAAACA
* ** * *
2335974 AAAGCATCAATATGATGCATCCTAATGAGAAGACTACATTTATGGTGCCTTATCTTGAAAGGAAT
765 AAAGCATCAAAATGATGCATCCTAATGAGAAGACTATGTTTATGGTGCCTTATCCTGAAAAGAAT
* * * * *
2336039 GGGGATTTGTATGAGCT-TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAC
830 CGGGATTAGTATAAG-TATTCATGTTTGTCTTATTTAAGACACAAACTTTAATTCTATCAAAAAC
** * * * * *
2336103 -GATGGAAGGAAGAGTTTTTCTTGCAACCTCAAAGCATCAATTTCATGT
894 AG-TGGAAAAAAAAGCTTTTCTTGCGACATCAAAGCATCAATGTCATGT
* * * * ** *
2336151 ATCCGAATGAAGGGAATGTGTTTTT-C-TCCCAATCTAGTAAAA-AA-TGGAGATTGTTATGAGA
1 ATCCTAATGAAGGGAATGTGTTTTTGCTTCACATTCTTG-AAAAGAACT-GAGACAGTTACGAGA
* * * * * * * * *
2336212 ATTGATGCTTCTCTTATTTACGGCATGAACTTTGATTTTAAGGAAAAAAGGGAAAAGAAAAGATT
64 ATCGATTCTTGTCTTATTTAAGGTATGAACATT-ATTTAAAAGAAAATA-GGAAAAGAAAAGATT
* * * * * * *
2336277 TCCATGCAAAAGAAAATCATCAATATCATTTATCATAATGAGGAGAATGTGTTTATGGTGCCTAA
127 CCCATGCAAAAGAAAATCATCCATATCATTTATCCTAAAGAGGAGAATATGTTTATAGTTCCTAA
* * * * *** *
2336342 TCACAAAATGAATGAAGATCATTACAAGAATCCATGTTTGTCTCTTTTGATGCCCAAACTTCGAA
192 TCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCATGAACTTAG-A
* * * * * * *
2336407 TTTCTAAAAAATGGTGGAAAAAAAGCCTTCCTTGCGAAACGAAAGCATCAATATGATGTATCCTA
256 CTT-TACAAAATTGTGG-AAAAAAGCCTT-TTTGCAAAAC-AAATCATC-ATATGATATATCCTA
** * * * * *
2336472 ATGAGAAGACTATGTTTATGTTGCCTTATCCTAAAAAGAATAGAGATTAGTATGAGTATTCATGT
316 AAAAGAAGACTATGTTTATGGTGCCTTATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGT
* * ** * *
2336537 TTGTCTTATTTAAGAGACAAACTTTGATTCTAACAAAAATGAAGGAAGGAAAAATTTTTCATGCG
381 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAA-GAAAAGTTTTTCTTGCG
* * * * *
2336602 ACATCAAAGCATCAATGTCATGTATCCTAATGAAGGGGATGTGCTTTGGGTTCACAATCTTGAAA
445 ACATCAAAGCATCAATGTCATGTATCCTAAT-AAGGGAATGTGTTTTCGCTTCACATTCTTGAAA
* * * * * *
2336667 AGAATTAAGATAGTTACAAGAATCAATTCTTGTCTTATTTAAGGTATGAACATT-ATTTTAAAGG
509 AGAACTGAGACAGTTACGAGAATCGATTCTTGTCTTATTTAAGGTATGAACATTGATTTT-AAGA
* * * ** * * *
2336731 AAAATA-GGCAAAGAAAAAAGTCTAACGCAAAAGAAAATCTTCAATA-CATTTATCCTAATAAGG
573 AAAATAGGGCAAACAAAAGATTCCCACGCAAAAAAAAATCATCAATATCATTTATCCTAATGAGG
* * * * * * * * *
2336794 AGAATATATTTGTAGTGCCTAATCACAAAAGGAATGAAGACCATTAGTATAATCCAAGTTTGTCT
638 AGAATATGTTTATAGTACCTAATCACAAAATGAATGAAGATCATTACTAAAATCC-AGATTGTCC
* * * ** * * * *
2336859 CATTTGAGGTACGAACTTAGACTTTACAAAACTTGGTG-A-GAAAAAAGCCTTTCTTGTGAAACG
702 CATTTGAAGCACAAACTTAGACTTTACAAAA-AAGG-GCAGGAAAAAAACCTTCCTTGCGAAACA
** * * * * *
2336922 AAAGCATCAGTATGACGTATCCTAAAGAGAAGACTATGTTTATGGTGCCCTATCCT-AAAAAAAT
765 AAAGCATCAAAATGATGCATCCTAATGAGAAGACTATGTTTATGGTGCCTTATCCTGAAAAGAA-
* * * * *
2336986 TGGGGATTAGTATGAGTATTCATGATTGTCTTATTTAAAAGACAAACTTT
829 TCGGGATTAGTATAAGTATTCATGTTTGTCTTATTTAAGACACAAACTTT
2337036 GATTTCATCA
Statistics
Matches: 3831, Mismatches: 659, Indels: 479
0.77 0.13 0.10
Matches are distributed among these distances:
925 3 0.00
926 109 0.03
927 113 0.03
928 1 0.00
930 2 0.00
931 5 0.00
932 417 0.11
933 359 0.09
934 22 0.01
935 2 0.00
936 1 0.00
937 2 0.00
938 2 0.00
939 4 0.00
942 4 0.00
943 2 0.00
944 5 0.00
945 77 0.02
946 4 0.00
947 264 0.07
948 411 0.11
949 620 0.16
950 527 0.14
951 11 0.00
952 1 0.00
953 1 0.00
954 1 0.00
955 1 0.00
956 4 0.00
957 17 0.00
958 16 0.00
959 12 0.00
960 11 0.00
961 4 0.00
962 9 0.00
963 2 0.00
964 8 0.00
966 2 0.00
967 5 0.00
968 1 0.00
969 4 0.00
970 4 0.00
971 2 0.00
972 3 0.00
975 4 0.00
976 2 0.00
980 2 0.00
984 2 0.00
987 1 0.00
988 6 0.00
989 1 0.00
991 1 0.00
992 2 0.00
994 3 0.00
995 4 0.00
996 1 0.00
997 6 0.00
998 1 0.00
1000 6 0.00
1001 2 0.00
1002 9 0.00
1003 5 0.00
1004 10 0.00
1005 10 0.00
1006 16 0.00
1007 21 0.01
1008 5 0.00
1009 2 0.00
1011 1 0.00
1012 1 0.00
1013 10 0.00
1014 72 0.02
1015 293 0.08
1016 4 0.00
1018 5 0.00
1020 2 0.00
1021 2 0.00
1023 3 0.00
1024 3 0.00
1025 1 0.00
1026 2 0.00
1027 2 0.00
1029 2 0.00
1030 2 0.00
1031 2 0.00
1032 4 0.00
1035 3 0.00
1037 7 0.00
1038 206 0.05
1039 7 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.32
Consensus pattern (941 bp):
ATCCTAATGAAGGGAATGTGTTTTTGCTTCACATTCTTGAAAAGAACTGAGACAGTTACGAGAAT
CGATTCTTGTCTTATTTAAGGTATGAACATTATTTAAAAGAAAATAGGAAAAGAAAAGATTCCCA
TGCAAAAGAAAATCATCCATATCATTTATCCTAAAGAGGAGAATATGTTTATAGTTCCTAATCAC
AAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCATGAACTTAGACTTTA
CAAAATTGTGGAAAAAAGCCTTTTTGCAAAACAAATCATCATATGATATATCCTAAAAAGAAGAC
TATGTTTATGGTGCCTTATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATT
TAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGAAAAGTTTTTCTTGCGACATCAAAGCA
TCAATGTCATGTATCCTAATAAGGGAATGTGTTTTCGCTTCACATTCTTGAAAAGAACTGAGACA
GTTACGAGAATCGATTCTTGTCTTATTTAAGGTATGAACATTGATTTTAAGAAAAATAGGGCAAA
CAAAAGATTCCCACGCAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTAT
AGTACCTAATCACAAAATGAATGAAGATCATTACTAAAATCCAGATTGTCCCATTTGAAGCACAA
ACTTAGACTTTACAAAAAAGGGCAGGAAAAAAACCTTCCTTGCGAAACAAAAGCATCAAAATGAT
GCATCCTAATGAGAAGACTATGTTTATGGTGCCTTATCCTGAAAAGAATCGGGATTAGTATAAGT
ATTCATGTTTGTCTTATTTAAGACACAAACTTTAATTCTATCAAAAACAGTGGAAAAAAAAGCTT
TTCTTGCGACATCAAAGCATCAATGTCATGT
Found at i:2333857 original size:89 final size:89
Alignment explanation
Indices: 2333705--2333880 Score: 298
Period size: 89 Copynumber: 2.0 Consensus size: 89
2333695 CAATGTCATG
* * *
2333705 CATCCTAATGAAGGGAATGTGTTTTCGCTTCACATTCTTGAAAAGAACTGAGAGAGTTGCGAGAA
1 CATCCTAATGAAAGGAATGTGTTTTCGCCTCACATTCTTGAAAAGAACTGAGAGAGTTACGAGAA
2333770 TCGATTCTTATCTTATTTAAGGTA
66 TCGATTCTTATCTTATTTAAGGTA
* *
2333794 CATCCTAATGAAAGGAATGTGTTTTTGCCTCACATTCTTGAAAAGAATTGAGAGAGTTACGAGAA
1 CATCCTAATGAAAGGAATGTGTTTTCGCCTCACATTCTTGAAAAGAACTGAGAGAGTTACGAGAA
*
2333859 TCGATTCTTGTCTTATTTAAGG
66 TCGATTCTTATCTTATTTAAGG
2333881 CATGAACATT
Statistics
Matches: 81, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
89 81 1.00
ACGTcount: A:0.31, C:0.14, G:0.21, T:0.34
Consensus pattern (89 bp):
CATCCTAATGAAAGGAATGTGTTTTCGCCTCACATTCTTGAAAAGAACTGAGAGAGTTACGAGAA
TCGATTCTTATCTTATTTAAGGTA
Found at i:2336575 original size:158 final size:157
Alignment explanation
Indices: 2335834--2336577 Score: 416
Period size: 157 Copynumber: 4.7 Consensus size: 157
2335824 CGATATCTTT
* * * * * * * *
2335834 TATCCTAATGAGGAGAATGTGTTTATTGTGCCTAATCAC-AAAATGAATGAAGATCATTACT-AC
1 TATCCTAATGAGAAGAATATGTTTATGGTGCCTAATC-CTAAAAAGAATGGAGATTAGTA-TGAG
* * * * *
2335897 AATCCATGTTTGTCTCT-TTTGAG-GCACGAACTTAGACTT-T-ACAAAAAATGGTGG-GAAAAA
64 AATTCATGTTTGTCT-TATTTAAGAG-ACAAACTTTGA-TTCTAAC-AAAAATGGTGGAAAAAAA
* * *
2335957 GCCTTTCTTGCAAAACAAAAGCATCAATATGATG
125 GCCTTCCTTGC-AAACGAAAGCATCAATATCATG
* * ** * * * * * * **
2335991 CATCCTAATGAGAAGACTACATTTATGGTGCCTTATCTTGAAAGGAATGGGGATTTGTATGAGCT
1 TATCCTAATGAGAAGAATATGTTTATGGTGCCTAATCCTAAAAAGAATGGAGATTAGTATGAGAA
* * * * * **
2336056 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAAGGAAGAGTTTT
66 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAACAAAAATGGTGGAA-AAAAAGCCTT
* * * *
2336121 TCTTGCAACCTCAAAGCATCAATTTCATG
130 CCTTGCAAAC-GAAAGCATCAATATCATG
* * * ** *
2336150 TATCCGAATGA-AGGGAATGTGTTT-TTCT-CCCAAT-CTAGTAAAA-AATGGAGATT-GTTATG
1 TATCCTAATGAGA-AGAATATGTTTATGGTGCCTAATCCTA--AAAAGAATGGAGATTAG-TATG
* * * * * * * *
2336209 AGAATTGATGCTTCTCTTATTTACG-G-CATGAACTTTGATTTTAAGGAAAAAAGG-GAAAAGAA
62 AGAATTCATGTTTGTCTTATTTAAGAGACA--AACTTTGATTCTAA-CAAAAATGGTGGAAA-AA
** * * * *
2336271 AAGATTTCCATGCAAAAGAAAATCATCAATATCATT
123 AAGCCTTCCTTGCAAACG-AAAGCATCAATATCATG
* * * * * * * **
2336307 TATCATAATGAGGAGAATGTGTTTATGGTGCCTAATCAC-AAAATGAATGAAGATCATTACAAGA
1 TATCCTAATGAGAAGAATATGTTTATGGTGCCTAATC-CTAAAAAGAATGGAGATTAGTATGAGA
* * *
2336371 ATCCATGTTTGTCTCT-TTT--GATGCCCAAACTTCGAATTTCT-A-AAAAATGGTGGAAAAAAA
65 ATTCATGTTTGTCT-TATTTAAGA-G-ACAAACTTTG-A-TTCTAACAAAAATGGTGGAAAAAAA
*
2336431 GCCTTCCTTGCGAAACGAAAGCATCAATATGATG
125 GCCTTCCTTGC-AAACGAAAGCATCAATATCATG
* * * * *
2336465 TATCCTAATGAGAAGACTATGTTTATGTTGCCTTATCCTAAAAAGAATAGAGATTAGTATGAGTA
1 TATCCTAATGAGAAGAATATGTTTATGGTGCCTAATCCTAAAAAGAATGGAGATTAGTATGAGAA
2336530 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAACAAAAATG
66 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAACAAAAATG
2336578 AAGGAAGGAA
Statistics
Matches: 429, Mismatches: 118, Indels: 79
0.69 0.19 0.13
Matches are distributed among these distances:
155 2 0.00
156 11 0.03
157 181 0.42
158 134 0.31
159 89 0.21
160 6 0.01
161 6 0.01
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (157 bp):
TATCCTAATGAGAAGAATATGTTTATGGTGCCTAATCCTAAAAAGAATGGAGATTAGTATGAGAA
TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAACAAAAATGGTGGAAAAAAAGCCTTC
CTTGCAAACGAAAGCATCAATATCATG
Found at i:2338845 original size:12 final size:11
Alignment explanation
Indices: 2338823--2338898 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
2338813 AGAGAAAGAA
*
2338823 GAGAGAGGAGG
1 GAGATAGGAGG
2338834 GATGATAGGAGG
1 GA-GATAGGAGG
*
2338846 AGAGACAGGA--
1 -GAGATAGGAGG
*
2338856 GAGATAGTA--
1 GAGATAGGAGG
2338865 GAGATAGGAGG
1 GAGATAGGAGG
2338876 GATGATAGGAGG
1 GA-GATAGGAGG
*
2338888 AGAGACAGGAG
1 -GAGATAGGAG
2338899 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:2338855 original size:24 final size:24
Alignment explanation
Indices: 2338822--2338907 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
2338812 AAGAGAAAGA
*
2338822 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
2338846 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
2338864 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
2338888 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
2338908 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:2338874 original size:42 final size:42
Alignment explanation
Indices: 2338813--2338931 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
2338803 TAGCCCTCAA
* *
2338813 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
2338855 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
2338897 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
2338932 GAGAGAAGAA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.43, C:0.03, G:0.46, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:2345571 original size:947 final size:943
Alignment explanation
Indices: 2343906--2348740 Score: 5558
Period size: 947 Copynumber: 5.1 Consensus size: 943
2343896 GGTTGTCATC
* * ** * * *
2343906 AGTGCCTAATCATAAAATGAATGAAGATCTTTACTAGAATCCGTGTTTGTCACATTTAAGACACG
1 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCACG
* * * * *
2343971 AACTTAGAGTTTGCAAAAATTGGTGTGAAAAAAGCGTTTCTT--G---C----G--TCAATATGA
66 AACTTAGACTTTACAAAAAATGGTG-GGAAAAAGCCTTTCTTGCGAAACGAAAGCATCAATATGA
* * * * * * *
2344025 TGTATCCTAATGAGAAGACTTTGTTTATATTGCCTTTTTCCTGAAAAGAATTGGGATTAGTATGA
130 TGTATCTTAATAAGAAGACTATGTTTATGTGGCC-TTATCCTGAAAAGAATAGGGATTAGTATGA
* * ** *
2344090 GTATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAATGGTGGAAGGAAAAG-
194 GTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGC
* ** *
2344154 TTTCTCTTGCGAC-CCCAAAGCATCAATTTCATGTATTTTAATGAAGGGAATGTGTTTTGG-TTC
259 TTT-TCTTGTGACACCC-AAGCATCAATTTCATGTATCCTAATAAAGGGAATGTGTTTTGGCTTC
* * * * * **
2344217 CCAATCTCGTAAAA-AATGGAGATTATTACGAGAATTGATGCTTATCTTATTTAAGGGAAAAACT
322 CCAATCT--TAAAAGAATGGAGAATGTTACGAGAATCGATGCATGTCTTATTTAAGGGATGAACT
* *
2344281 TTGATTTTAA-GAAAAAAGGGGTAAAGAAATGATTTCCATGCAAAAGAAAATCATCAATATCATT
385 TT-ATTTTAAGGAAAATA--GGTAAAGAAAAGATTTCCATGCAAAA-AAAATCATCAATATCATT
* * * * * *
2344345 TATCCTAATAAGGAGAATGTGTTTGTAGTGCCTTACCATAAAATAAATGAAGATCATTACTAGAA
446 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAGAAAATGAATGAAGATCATTACTAGAA
*
2344410 TCCATGTTTGTCTCTTTTGAGGCAC-AGACTTAGACTTTACAAAAAATGGTGGGAAAAAAAGCCT
511 TCCATGTTTGTCT-ATTTGAGGCACGA-ACTTAGACTTTACAAAAAATGGTGGGAAAAAAA--CT
** * * * * *
2344474 TTCTCACGAAATGAAAGCATCGATATGATGTATCTTTTTAAGAAGACTATGTTTATGGTGCCTTA
572 TTCTTGCGAAACGAAAGCATCAATATGATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTTA
* * * * *
2344539 TCCTGAAAAAAATGGGGAGTAGTATGAATATTCTTGTTTGTCTTATTTAAGATACAAACTTTGAT
637 TCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
* * * * * *
2344604 TCTATCAAAAATGGTGGAAGGAAAAGTTTTTATGGCGACATCAAAGTATCAATGACTTGTAGCCT
702 TCTATCAAAAAAGATGGAAGGAAAAGTTTTTCT-GCGACATCAAAGTATCAATGTCATGTATCCT
* * *
2344669 AATGAAGGGAATTTGTTTTGGCTTCACAATATTGAAAAGAACTAAGACGGTTACGAGAATCGATT
766 AATGAAGGGAATGTGTTTTGGCTTCACAATCTTGAAAAGAACTAAGACAGTTACGAGAATCGATT
* * *
2344734 CTTGTCTTATTTAAGGTGTAAACATTGTTTTAAAGGAAAATAGGCAAAGAAAAGATTCCCACGCA
831 CTTGTCTTATTTAAGGTATGAACATTGTTTTAAAGGAAAATAGGCAAAGAAAAGATTCCCATGCA
* * * * *
2344799 AAAGAAAATCATCCATATCTTTTATCCTAATGATGAGAATGTCTTTAT
896 AAAGAAAATCATCAATATCATTTATCCTAATGAAGAGAATATGTTTAT
** * * * *
2344847 AGTGTATAATCACAAAATGAATGAAGATCATTAC-AGGAATCCATGTTTGTCTCTTTTGAGGTAT
1 AGTGCCTAATCACAAAATGAATGAAGATCATTACTA-GAATCCAAGTTTGTCTCATTTGAGGCAC
*
2344911 GAACTTAGACTTTACAAAAAATGGTGGGAAAAAGGCCTTTCTTGCGAAACGAAAGCATAAATATG
65 GAACTTAGACTTTACAAAAAATGGTGGGAAAAA-GCCTTTCTTGCGAAACGAAAGCATCAATATG
*
2344976 ATGTATCTTAATAAGAAGACTATGTTTATGTGGCCTTATCCTGAAAAGAATAGGGATTAGTCTGA
129 ATGTATCTTAATAAGAAGACTATGTTTATGTGGCCTTATCCTGAAAAGAATAGGGATTAGTATGA
* *
2345041 GTATTCATGTTTGTTTTATTTAAGAGACAAACTTTGATTCTATCAGAAACAGTGGAAAGAAAAGC
194 GTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGC
* * * *
2345106 TTTTCTTGTGATACCCAAGCATCAATGTCTTGTATCGTAA-AAAGGGAATGTGTTTTGGCTTCCC
259 TTTTCTTGTGACACCCAAGCATCAATTTCATGTATCCTAATAAAGGGAATGTGTTTTGGCTTCCC
* * * * * * *
2345170 AAACATTAAAAGAATAGAGACTATTACAAGAATCGATGCGTGTCATATTTAAGGGATGAACATTT
324 AATC-TTAAAAGAATGGAGAATGTTACGAGAATCGATGCATGTCTTATTTAAGGGATGAAC-TTT
* * *
2345235 -TTTTAAGGGAAAATACGTAAAGAAAAGATTCCCATGCAAAAGAAAATCATCCATATCATTTATC
387 ATTTTAA-GGAAAATAGGTAAAGAAAAGATTTCCATGCAAAA-AAAATCATCAATATCATTTATC
* *
2345299 CTAATGAGGAGAATATGTTTATAGTTCCTAATCAGAAAA-GAAATGAAGATCA-TACTAGAATCC
450 CTAATGAGGAGAATGTGTTTATAGTGCCTAATCAGAAAATG-AATGAAGATCATTACTAGAATCC
*
2345362 ATGTTTGTCTATTTTGAGGCACGAACTTAGACTTTACAAAAAACGGTGGGAAAAAAACTTTCTTG
514 ATGTTTGTCTA-TTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAACTTTCTTG
* * * *
2345427 CGAAACGAAAGCAACAATATGATGTATCCTTATGGGAAGACTATGTTTTTGTTGCCTTATCCTGA
578 CGAAACGAAAGCATCAATATGATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTTATCCTGA
* *
2345492 AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAAAGATAAACTTTGATTCTATC
643 AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
* * * *
2345557 AAAAAAGATGGAAGGAAAAGTTTTTCCTGTGACATTAAAGCT-TCAATATCATATATCCTAATGA
708 AAAAAAGATGGAAGGAAAAGTTTTT-CTGCGACATCAAAG-TATCAATGTCATGTATCCTAATGA
* * * * * *
2345621 AGGGAATATGTTTTTGCTTCATATTCTAGAAAAGAACTGAA-ACAGTTACAAGAATCGATTCTTG
771 AGGGAATGTGTTTTGGCTTCACAATCTTGAAAAGAACT-AAGACAGTTACGAGAATCGATTCTTG
* * *
2345685 TCTTATTTATGGTATGAACATTATTTTAAAGGAAAATAGGCAAAGAAAAAATTCCCATGCAAAAG
835 TCTTATTTAAGGTATGAACATTGTTTTAAAGGAAAATAGGCAAAGAAAAGATTCCCATGCAAAAG
* *
2345750 AACATCATCAATATCATTTATCCCAATGAAGAGAATATGTTTAT
900 AAAATCATCAATATCATTTATCCTAATGAAGAGAATATGTTTAT
* * * *
2345794 AGTGCCTAATCGCAAAGTGAATAAAGATCATTACTAGAATCTAAGTTTGTCTCATTTGAGGCACG
1 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCACG
** * * * **
2345859 AACTTAGACTTTACAAAATTTAGTAGGAAAAAGACTTTCTTGCGAAAAC-AAAAAATCAATATGA
66 AACTTAGACTTTACAAAAAATGGTGGGAAAAAGCCTTTCTTGCG-AAACGAAAGCATCAATATGA
* * *
2345923 TATAT-TGTAA-AGAGAAGACTATGTTTATG-GTGCCTTATCCCGAAAAGAATAGGGATT-GTGT
130 TGTATCT-TAATA-AGAAGACTATGTTTATGTG-GCCTTATCCTGAAAAGAATAGGGATTAGTAT
* *
2345984 GAGTATTCATGTTTGTCTTATTTAAGAGACAAACCTTGATTCTATCAAAAAAAGTGGAAAG-AAA
192 GAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAA
* * * * *
2346048 GTCTTTTCTTGTGACACCAAAGCATCAATGTCATGTTTTCTAAT-GAGGGAATGTGTTTTGGCTT
257 G-CTTTTCTTGTGACACCCAAGCATCAATTTCATGTATCCTAATAAAGGGAATGTGTTTTGGCTT
* * * * * *
2346112 CCCAAACTTTAAGAGATTGGAGACTGTTACGAGAATC-AGTCCATGTCTTATTTAAGGGATGAGC
321 CCCAATC-TTAAAAGAATGGAGAATGTTACGAGAATCGA-TGCATGTCTTATTTAAGGGATGAAC
* * * * * *
2346176 TTTGATTTTATGAAAAATAGGGCAAAGAAAAGATTTCCTTGCAAAAAAAACCATTAATATCATTT
384 TTT-ATTTTAAGGAAAATA-GGTAAAGAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTT
*
2346241 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTATTC-GAATAATGGAA-GAAGATCATTACTAGA
447 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAGAA-AAT-GAATGAAGATCATTACTAGA
* * * * * * *
2346304 ATCCACAT-TTTTTGTATTTGAGGCACGAACTTAAACTTTACAAAAATTGGCGAGAAAAAAGGCT
510 AT-C-CATGTTTGTCTATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAA-ACT
* * * * *
2346368 TTCTTACAAAACCAAAGTATCAATATCG-TGTATCCTAATGAGAAGA-TAATGTTTATGGTGCCT
572 TTCTTGCGAAACGAAAGCATCAATAT-GATGTATCCTTATGAGAAGACT-ATGTTTATGGTGCCT
* ** *
2346431 TATCCTGAGAAGAATAAGGATTAGTATGAGTATTCATGTTTATCTTATTTAAGAGAC-AACTTTG
635 TATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
* * * * * *
2346495 ATTCTATCAAAAACGGTAGAAGGAAAGGTTTTTCTTGCGACATCAAAGCATCAATTTCATGTATC
700 ATTCTATCAAAAAAGATGGAAGGAAAAGTTTTTC-TGCGACATCAAAGTATCAATGTCATGTATC
* * * * *
2346560 CTAATGAGGGGAATGTGTTTTGAC-TCCCAATCTTGTAAAGAA-TGGAGA-ATGTTACGAGAATC
764 CTAATGAAGGGAATGTGTTTTGGCTTCACAATCTTGAAAAGAACT-AAGACA-GTTACGAGAATC
* * * * * *
2346622 GATGCATGTCTTATTTAAGGTAAGAACATTGTTTTAAAGGAAAATAAGTAAAGAAAAGATTCTCA
827 GATTCTTGTCTTATTTAAGGTATGAACATTGTTTTAAAGGAAAATAGGCAAAGAAAAGATTCCCA
* *
2346687 TGCAAAAGAAAATCATCAATATCATTTATCCTAAAGAAGAGAACATGTTTAT
892 TGCAAAAGAAAATCATCAATATCATTTATCCTAATGAAGAGAATATGTTTAT
* * * * *
2346739 AGTGCCTAATCCCAAAATGCATGAAGATCATTACTTGAATCTAAGTTTGTCTCTTTTGAGGCACG
1 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCACG
*
2346804 AACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTGCGAAATGAAAGCATCAATATGA
66 AACTTAGACTTTACAAAAAATGGTGGG-AAAAAGCCTTTCTTGCGAAACGAAAGCATCAATATGA
*
2346869 TGTATCCTAATAAGAAGACTATGTTTATGAT-GCCTTATCCTGAAAAGAAT-GGGTATTAGTATG
130 TGTATCTTAATAAGAAGACTATGTTTATG-TGGCCTTATCCTGAAAAGAATAGGG-ATTAGTATG
* * ** * *
2346932 AGTAGTCATGTTTGTTTTATTTATTAGAC-AACTTTGATTCTATCAAAAACGGTGGAAGGAAAAG
193 AGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAG
* *
2346996 TTTTTCTTGTGACA-CCAGAGCATCAATTTCATGTATCCTAATAAAGGGAATGT-TTTTGAC-TC
258 CTTTTCTTGTGACACCCA-AGCATCAATTTCATGTATCCTAATAAAGGGAATGTGTTTTGGCTTC
** * * * *
2347058 CCAATCTCGT-AAAGAATGGAGAATGTTGTGGGAATCGATGCATGTCTTATTTAAGAGATAAATT
322 CCAATCT--TAAAAGAATGGAGAATGTTACGAGAATCGATGCATGTCTTATTTAAGGGATGAACT
* * * * * *
2347122 TTGATTTTAAGGAAAATTGGATGAAGAAAATATTTACATACCAAAAAAAATCATTAATATCATTT
385 TT-ATTTTAAGGAAAATAGG-TAAAGAAAAGATTTCCAT-GCAAAAAAAATCATCAATATCATTT
* * * * * * *
2347187 ATCATAATGAGGATAATGTGTTTATAGTGCTTAATCATAAAATGAACGATGATCAATACTAGAAT
447 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAGAAAATGAATGAAGATCATTACTAGAAT
* * ** *
2347252 CCGTGTTTGTCTCATTTGAGGCACGAACTTAGACCTTACAAAATTTGGTGGGAAAAAAGCCTTTC
512 CCATGTTTGTCT-ATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAA-ACTTTC
* * * *
2347317 TTGC-AAATCGAAAGCATCAATATGATGTATCCTAAAGATAAGACTATGTTTATGGTGCATTATC
575 TTGCGAAA-CGAAAGCATCAATATGATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTTATC
* * * * *
2347381 CT-AAAAGGAATGAGTATTACTAT-ATGTATTCATGTTGGTCTTATTTAAGAGACAAACTATGAT
639 CTGAAAA-GAATGGGGATTAGTATGA-GTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
** * * *
2347444 TCTATCAAAAACA-ATGGAAGGAAAAGTTTTTCCTATGACATCAGAGTATCAATGTCTTGTCTCC
702 TCTATCAAAAA-AGATGGAAGGAAAAGTTTTT-CTGCGACATCAAAGTATCAATGTCATGTATCC
* * * * *
2347508 TAATGGAGGGAATGTGTTTTGGCTTCGCAATCTTGAAAAGAACTAAGGCAATTATGAGAATCGAT
765 TAATGAAGGGAATGTGTTTTGGCTTCACAATCTTGAAAAGAACTAAGACAGTTACGAGAATCGAT
* * *
2347573 TCTTGTCTTATTTAAGGTATGAACATTCTTTTAAAGGAAAATAGGCAAAGAAAAGATTCCTAAGC
830 TCTTGTCTTATTTAAGGTATGAACATTGTTTTAAAGGAAAATAGGCAAAGAAAAGATTCCCATGC
* * * *
2347638 AAAAGAAAATCATTAGTTTCATTTATCGTAAT-AAGGAGAATATGTTTAT
895 AAAAGAAAATCATCAATATCATTTATCCTAATGAA-GAGAATATGTTTAT
* *
2347687 AGTGCCTGATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACG
1 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCACG
* * * * * * *
2347752 AACTTAGAGTTTTCAATAATTGGTGGGAAAAAACCTTTCTTACGAAACGAAAGCATCAAGATGAT
66 AACTTAGACTTTACAAAAAATGGTGGGAAAAAGCCTTTCTTGCGAAACGAAAGCATCAATATGAT
* * * *
2347817 GTATACTGAA-GAGAAGACTATGTTTATG-GTGCCTTATCCTGAAAAATAATGGGGATTAGTATG
131 GTAT-CTTAATAAGAAGACTATGTTTATGTG-GCCTTATCCTG-AAAAGAATAGGGATTAGTATG
* *
2347880 AGTATTCATGTTTGTCTTATTTATGAGACAAACTTTAATTCTATCAAAAAC-G-GCGAAAGGAAA
193 AGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTG-GAAA-GAAA
* * * * * * *
2347943 AGTTTTTCTTGCGACACCAAAGCATCAATTTCAGGTATCCTAATGAGGGGAATGTGTTTTGAC-T
256 AGCTTTTCTTGTGACACCCAAGCATCAATTTCATGTATCCTAATAAAGGGAATGTGTTTTGGCTT
* * ** * * *
2348007 CCCAATC-T---CGTAATGGAGAATGTCATAATAATCAATGCATGTCTTATTTAGGGGATGAACT
321 CCCAATCTTAAAAG-AATGGAGAATGTTACGAGAATCGATGCATGTCTTATTTAAGGGATGAACT
* * * * *
2348068 TTGATTTTAAGGAAAATAGGACAAAGAAAAGATTTCCATAC-AAAAAAATCATTAGTATCTTTTA
385 TT-ATTTTAAGGAAAATAGG-TAAAGAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTTA
* * * *
2348132 TCCTAATGAGGATAATGTGTTTATAGTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATC
448 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAGAAAATGAATGAAGATCATTACTAGAATC
* * * * * *
2348197 TAAGATTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAAACGGTGGGAAAAAAACCTTTTT
513 CATGTTTGTCT-ATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAA-CTTTCT
* * * * *
2348262 TGCGAAACAAAAGCAACAACATGATGTATCCTTATGAGAAGACTATGTTTATGTTACCTTATCCT
576 TGCGAAACGAAAGCATCAATATGATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTTATCCT
* * *
2348327 GAAAAGAATAGGGATTAGTATGAGCATTCATGTTTGTTTTATTT-A-AGACAAACTTTGATTCTA
641 GAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
*
2348390 TCAAAAATGATGGAAGGAAAAGTTTTTCTTGCGACATCAAAGCT-TCAATGTCATGTATCCTAAT
706 TCAAAAAAGATGGAAGGAAAAGTTTTTC-TGCGACATCAAAG-TATCAATGTCATGTATCCTAAT
* ** ** * * *
2348454 AAAGGGAATGCATTTTTACTTCACATTCTTGAAAAGAACTGAGACAGTTACGAGAATCAATTCTT
769 GAAGGGAATGTGTTTTGGCTTCACAATCTTGAAAAGAACTAAGACAGTTACGAGAATCGATTCTT
**
2348519 GTCTTATTTAAGGTATGAATGTTGTTTTAAAGGAAAATAGGCAAAGAAAAGATTCCCATGCAAAA
834 GTCTTATTTAAGGTATGAACATTGTTTTAAAGGAAAATAGGCAAAGAAAAGATTCCCATGCAAAA
* * **
2348584 TAAAATCACCAATATCATTTATCCTAAT-AAGGAGAATGCGTTTAT
899 GAAAATCATCAATATCATTTATCCTAATGAA-GAGAATATGTTTAT
* * * *
2348629 AGTGCCTAATCAC-AAATGAAAGATGATCATTACTAGAATCCAAGATTGTCTCATTTGAGGCATG
1 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCACG
* *
2348693 AACTTAGACTTTACAAAAAACGGTGGGAAAAAAGCCTTTCCTGCGAAA
66 AACTTAGACTTTACAAAAAATGGTGGG-AAAAAGCCTTTCTTGCGAAA
2348741 TGAATATCAT
Statistics
Matches: 3322, Mismatches: 470, Indels: 203
0.83 0.12 0.05
Matches are distributed among these distances:
940 7 0.00
941 151 0.05
942 248 0.07
943 3 0.00
944 235 0.07
945 558 0.17
946 658 0.20
947 709 0.21
948 267 0.08
949 139 0.04
950 135 0.04
951 159 0.05
952 53 0.02
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (943 bp):
AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCACG
AACTTAGACTTTACAAAAAATGGTGGGAAAAAGCCTTTCTTGCGAAACGAAAGCATCAATATGAT
GTATCTTAATAAGAAGACTATGTTTATGTGGCCTTATCCTGAAAAGAATAGGGATTAGTATGAGT
ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTT
TTCTTGTGACACCCAAGCATCAATTTCATGTATCCTAATAAAGGGAATGTGTTTTGGCTTCCCAA
TCTTAAAAGAATGGAGAATGTTACGAGAATCGATGCATGTCTTATTTAAGGGATGAACTTTATTT
TAAGGAAAATAGGTAAAGAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTTATCCTAATG
AGGAGAATGTGTTTATAGTGCCTAATCAGAAAATGAATGAAGATCATTACTAGAATCCATGTTTG
TCTATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAACTTTCTTGCGAAACGA
AAGCATCAATATGATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTTATCCTGAAAAGAATG
GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAAGA
TGGAAGGAAAAGTTTTTCTGCGACATCAAAGTATCAATGTCATGTATCCTAATGAAGGGAATGTG
TTTTGGCTTCACAATCTTGAAAAGAACTAAGACAGTTACGAGAATCGATTCTTGTCTTATTTAAG
GTATGAACATTGTTTTAAAGGAAAATAGGCAAAGAAAAGATTCCCATGCAAAAGAAAATCATCAA
TATCATTTATCCTAATGAAGAGAATATGTTTAT
Found at i:2345741 original size:473 final size:474
Alignment explanation
Indices: 2343906--2348740 Score: 5128
Period size: 473 Copynumber: 10.2 Consensus size: 474
2343896 GGTTGTCATC
* * * * * *
2343906 AGTGCCTAATCATAAAATGAATGAAGATCTTTACTAGAATCCGTGTTTGTCACATTTAAGACACG
1 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACG
* * * * *
2343971 AACTTAGAGTTTGCAAAAATTGGTGTGAAAAAAGCGTTTCTT--G---C----G--TCAATATGA
66 AACTTAGACTTTACAAAAAATGGTGGGAAAAAA-CCTTTCTTGCGAAACGAAAGCATCAATATGA
* ** * *
2344025 TGTATCCTAATGAGAAGACTTTGTTTATATTGCCTTTTTCCTGAAAAGAATTGGGATTAGTATGA
130 TGTATCCTAATGAGAAGACTATGTTTATGGTGCC-TTATCCTGAAAAGAATGGGGATTAGTATGA
*
2344090 GTATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT-AAAAAATGGTGGAAGGAAAAG
194 GTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAA-GGTGGAAGGAAAAG
* * * ** * *
2344154 TTTCTCTTGCGACCCCAAAGCATCAATTTCATGTATTTTAATGAAGGGAATGTG-TTTTGGTTCC
258 TTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCA
* ** * * * ** *
2344218 CAATCTCGTAAAA-AATGGAGATTA-TTACGAGAATTGATGCTTATCTTATTTAAGGGAAAAACT
323 CAATCTTG-AAAAGAATGGA-AACAGTTACGAGAATCGATGCTTGTCTTATTTAAGGTATGAACA
* * * *
2344281 TTGATTTT-AA-GAAAAAAGGGGTAAAGAAATGATTTCCATGCAAAAGAAAATCATCAATATCAT
386 TT-ATTTTAAAGGAAAATA--GGCAAAGAAAAGATTCCCATGCAAAAGAAAATCATCAATATCAT
* *
2344344 TTATCCTAATAAGGAGAATGTGTTTGT
448 TTATCCTAATGAGGAGAATGTGTTTAT
* * * * *
2344371 AGTGCCTTACCATAAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCTTTTGAGGCAC-
1 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACG
** * *
2344435 AGACTTAGACTTTACAAAAAATGGTGGGAAAAAAAGCCTTTCTCACGAAATGAAAGCATCGATAT
66 A-ACTTAGACTTTACAAAAAATGGTGGG-AAAAAA-CCTTTCTTGCGAAACGAAAGCATCAATAT
* ** * * *
2344500 GATGTATCTTTTTAAGAAGACTATGTTTATGGTGCCTTATCCTGAAAAAAATGGGGAGTAGTATG
128 GATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATG
* * * *
2344565 AATATTCTTGTTTGTCTTATTTAAGATACAAACTTTGATTCTATCAAAAATGGTGGAAGGAAAAG
193 AGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAAGGTGGAAGGAAAAG
* * * * * * * * *
2344630 TTTTTATGGCGACATCAAAGTATCAATGACTTGTAGCCTAATGAAGGGAATTTGTTTTGGCTTCA
258 TTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCA
* * * * *
2344695 CAATATTGAAAAGAACT--AAGACGGTTACGAGAATCGATTCTTGTCTTATTTAAGGTGTAAACA
323 CAATCTTGAAAAGAA-TGGAA-ACAGTTACGAGAATCGATGCTTGTCTTATTTAAGGTATGAACA
* * * *
2344758 TTGTTTTAAAGGAAAATAGGCAAAGAAAAGATTCCCACGCAAAAGAAAATCATCCATATCTTTTA
386 TTATTTTAAAGGAAAATAGGCAAAGAAAAGATTCCCATGCAAAAGAAAATCATCAATATCATTTA
* *
2344823 TCCTAATGATGAGAATGTCTTTAT
451 TCCTAATGAGGAGAATGTGTTTAT
** * * *
2344847 AGTGTATAATCACAAAATGAATGAAGATCATTAC-AGGAATCCATGTTTGTCTCTTTTGAGGTAT
1 AGTGCCTAATCACAAAATGAATGAAGATCATTACTA-GAATCCATGTTTGTCTCATTTGAGGCAC
* *
2344911 GAACTTAGACTTTACAAAAAATGGTGGGAAAAAGGCCTTTCTTGCGAAACGAAAGCATAAATATG
65 GAACTTAGACTTTACAAAAAATGGTGGGAAAAA-ACCTTTCTTGCGAAACGAAAGCATCAATATG
* * * *
2344976 ATGTATCTTAATAAGAAGACTATGTTTAT-GTGGCCTTATCCTGAAAAGAATAGGGATTAGTCTG
129 ATGTATCCTAATGAGAAGACTATGTTTATGGT-GCCTTATCCTGAAAAGAATGGGGATTAGTATG
* * *
2345040 AGTATTCATGTTTGTTTTATTTAAGAGACAAACTTTGATTCTATCAGAAACA-GTGGAAAGAAAA
193 AGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA-AAAAAGGTGGAAGGAAAA
* * * * * * * *
2345104 GCTTTTCTTGTGATACCCAAGCATCAATGTCTTGTATCGTAA-AAAGGGAATGTGTTTTGGCTTC
257 GTTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTC
* * * * * * * *
2345168 CCAAACATT-AAAAGAATAGAGACTA-TTACAAGAATCGATGCGTGTCATATTTAAGGGATGAAC
322 ACAATC-TTGAAAAGAATGGAAAC-AGTTACGAGAATCGATGCTTGTCTTATTTAAGGTATGAAC
* * * * *
2345231 ATTTTTTTAAGGGAAAATACGTAAAGAAAAGATTCCCATGCAAAAGAAAATCATCCATATCATTT
385 ATTATTTTAAAGGAAAATAGGCAAAGAAAAGATTCCCATGCAAAAGAAAATCATCAATATCATTT
*
2345296 ATCCTAATGAGGAGAATATGTTTAT
450 ATCCTAATGAGGAGAATGTGTTTAT
* *
2345321 AGTTCCTAATCAGAAAA-GAAATGAAGATCA-TACTAGAATCCATGTTTGTCT-ATTTTGAGGCA
1 AGTGCCTAATCACAAAATG-AATGAAGATCATTACTAGAATCCATGTTTGTCTCA-TTTGAGGCA
* * *
2345383 CGAACTTAGACTTTACAAAAAACGGTGGGAAAAAAACTTTCTTGCGAAACGAAAGCAACAATATG
64 CGAACTTAGACTTTACAAAAAATGGTGGGAAAAAACCTTTCTTGCGAAACGAAAGCATCAATATG
* * * *
2345448 ATGTATCCTTATGGGAAGACTATGTTTTTGTTGCCTTATCCTGAAAAGAATGGGGATTAGTATGA
129 ATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGA
* * *
2345513 GTATTCATGTTTGTCTTATTTAAAAGATAAACTTTGATTCTATCAAAAAAGATGGAAGGAAAAGT
194 GTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAAGGTGGAAGGAAAAGT
* * ** * * * * *
2345578 TTTTCCTGTGACATTAAAGCTTCAATATCATATATCCTAATGAAGGGAATATGTTTTTGCTTCAT
259 TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCAC
* * * * *
2345643 ATTCTAGAAAAGAACT-GAAACAGTTACAAGAATCGATTCTTGTCTTATTTATGGTATGAACATT
324 AATCTTGAAAAGAA-TGGAAACAGTTACGAGAATCGATGCTTGTCTTATTTAAGGTATGAACATT
* *
2345707 ATTTTAAAGGAAAATAGGCAAAGAAAAAATTCCCATGCAAAAGAACATCATCAATATCATTTATC
388 ATTTTAAAGGAAAATAGGCAAAGAAAAGATTCCCATGCAAAAGAAAATCATCAATATCATTTATC
* * *
2345772 CCAATGAAGAGAATATGTTTAT
453 CTAATGAGGAGAATGTGTTTAT
* * * * *
2345794 AGTGCCTAATCGCAAAGTGAATAAAGATCATTACTAGAATCTAAGTTTGTCTCATTTGAGGCACG
1 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACG
** * * **
2345859 AACTTAGACTTTACAAAATTTAGTAGGAAAAAGA-CTTTCTTGCGAAAAC-AAAAAATCAATATG
66 AACTTAGACTTTACAAAAAATGGTGGGAAAAA-ACCTTTCTTGCG-AAACGAAAGCATCAATATG
* ** * * * *
2345922 ATATATTGTAAAGAGAAGACTATGTTTATGGTGCCTTATCCCGAAAAGAATAGGGATT-GTGTGA
129 ATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGA
* * *
2345986 GTATTCATGTTTGTCTTATTTAAGAGACAAACCTTGATTCTATCAAAAAAAGTGGAAAG-AAAGT
194 GTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAAGGTGGAAGGAAAAGT
* * * * *
2346050 CTTTTCTTGTGACACCAAAGCATCAATGTCATGTTTTCTAATG-AGGGAATGTGTTTTGGCTTCC
259 -TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCA
* * * * * * * * * * *
2346114 CAAACTTTAAGAGATTGGAGACTGTTACGAGAATC-AGTCCATGTCTTATTTAAGGGATGAGCTT
323 CAATCTTGAAAAGAATGGAAACAGTTACGAGAATCGA-TGCTTGTCTTATTTAAGGTATGAACAT
* * * * * *
2346178 TGATTTT-ATGAAAAATAGGGCAAAGAAAAGATTTCCTTGCAAAA-AAAACCATTAATATCATTT
387 T-ATTTTAAAGGAAAATA-GGCAAAGAAAAGATTCCCATGCAAAAGAAAATCATCAATATCATTT
2346241 ATCCTAATGAGGAGAATGTGTTTAT
450 ATCCTAATGAGGAGAATGTGTTTAT
* * * *
2346266 AGTGCCTATTCGA-ATAATGGAA-GAAGATCATTACTAGAATCCACAT-TTTTTGT-ATTTGAGG
1 AGTGCCTAATC-ACAAAAT-GAATGAAGATCATTACTAGAAT-C-CATGTTTGTCTCATTTGAGG
* * * * * * * * *
2346327 CACGAACTTAAACTTTACAAAAATTGGCGAGAAAAAAGGCTTTCTTACAAAACCAAAGTATCAAT
62 CACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAA-CCTTTCTTGCGAAACGAAAGCATCAAT
* **
2346392 ATCG-TGTATCCTAATGAGAAGA-TAATGTTTATGGTGCCTTATCCTGAGAAGAATAAGGATTAG
126 AT-GATGTATCCTAATGAGAAGACT-ATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAG
* * *
2346455 TATGAGTATTCATGTTTATCTTATTTAAGAGAC-AACTTTGATTCTATCAAAAACGGTAGAAGGA
189 TATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAAGGTGGAAGGA
* * * *
2346519 AAGGTTTTTCTTGCGACATCAAAGCATCAATTTCATGTATCCTAATGAGGGGAATGTG-TTTTGA
254 AAAGTTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTG-
* * * * *
2346583 C-TCCCAATCTTGTAAAGAATGGAGAA-TGTTACGAGAATCGATGCATGTCTTATTTAAGGTAAG
318 CTTCACAATCTTGAAAAGAATGGA-AACAGTTACGAGAATCGATGCTTGTCTTATTTAAGGTATG
* * * *
2346646 AACATTGTTTTAAAGGAAAATAAGTAAAGAAAAGATTCTCATGCAAAAGAAAATCATCAATATCA
382 AACATTATTTTAAAGGAAAATAGGCAAAGAAAAGATTCCCATGCAAAAGAAAATCATCAATATCA
* * **
2346711 TTTATCCTAAAGAAGAGAACATGTTTAT
447 TTTATCCTAATGAGGAGAATGTGTTTAT
* * * * * *
2346739 AGTGCCTAATCCCAAAATGCATGAAGATCATTACTTGAATCTAAGTTTGTCTCTTTTGAGGCACG
1 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACG
*
2346804 AACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTGCGAAATGAAAGCATCAATATGA
66 AACTTAGACTTTACAAAAAATGGTGGGAAAAAA-CCTTTCTTGCGAAACGAAAGCATCAATATGA
* * *
2346869 TGTATCCTAATAAGAAGACTATGTTTATGATGCCTTATCCTGAAAAGAATGGGTATTAGTATGAG
130 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAG
* * ** *
2346934 TAGTCATGTTTGTTTTATTTATTAGAC-AACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTT
195 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAAGGTGGAAGGAAAAGTT
* * * * *
2346998 TTTCTTGTGACACCAGAGCATCAATTTCATGTATCCTAATAAAGGGAA--TGTTTTTGAC-TCCC
260 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTG-CTTCAC
* * * ** * * * **
2347060 AATCTCGTAAAGAATGGAGAA-TGTTGTGGGAATCGATGCATGTCTTATTTAAGAG-ATAAATTT
324 AATCTTGAAAAGAATGGA-AACAGTTACGAGAATCGATGCTTGTCTTATTTAAG-GTATGAACAT
* * ** * *
2347123 TGATTTT-AAGGAAAATTGG-ATGAAGAAAATATTTACATACCAAAA-AAAATCATTAATATCAT
387 T-ATTTTAAAGGAAAATAGGCA--AAGAAAAGATTCCCAT-GCAAAAGAAAATCATCAATATCAT
* *
2347185 TTATCATAATGAGGATAATGTGTTTAT
448 TTATCCTAATGAGGAGAATGTGTTTAT
* * * * * *
2347212 AGTGCTTAATCATAAAATGAACGATGATCAATACTAGAATCCGTGTTTGTCTCATTTGAGGCACG
1 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACG
* **
2347277 AACTTAGACCTTACAAAATTTGGTGGGAAAAAAGCCTTTCTTGC-AAATCGAAAGCATCAATATG
66 AACTTAGACTTTACAAAAAATGGTGGGAAAAAA-CCTTTCTTGCGAAA-CGAAAGCATCAATATG
* * * * * *
2347341 ATGTATCCTAAAGATAAGACTATGTTTATGGTGCATTATCCT-AAAAGGAATGAGTATTACTAT-
129 ATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTTATCCTGAAAA-GAATGGGGATTAGTATG
* * *
2347404 ATGTATTCATGTTGGTCTTATTTAAGAGACAAACTATGATTCTATCAAAAACA-ATGGAAGGAAA
193 A-GTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA-AGGTGGAAGGAAA
* ** * * * * * * *
2347468 AGTTTTTCCTATGACATCAGAGTATCAATGTCTTGTCTCCTAATGGAGGGAATGTGTTTTGGCTT
256 AGTTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTT
* * * * *
2347533 CGCAATCTTGAAAAGAACT--AAGGCAATTATGAGAATCGATTCTTGTCTTATTTAAGGTATGAA
321 CACAATCTTGAAAAGAA-TGGAA-ACAGTTACGAGAATCGATGCTTGTCTTATTTAAGGTATGAA
* * * * * *
2347596 CATTCTTTTAAAGGAAAATAGGCAAAGAAAAGATTCCTAAGCAAAAGAAAATCATTAGTTTCATT
384 CATTATTTTAAAGGAAAATAGGCAAAGAAAAGATTCCCATGCAAAAGAAAATCATCAATATCATT
* * *
2347661 TATCGTAATAAGGAGAATATGTTTAT
449 TATCCTAATGAGGAGAATGTGTTTAT
*
2347687 AGTGCCTGATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACG
1 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACG
* * * * * *
2347752 AACTTAGAGTTTTCAATAATTGGTGGGAAAAAACCTTTCTTACGAAACGAAAGCATCAAGATGAT
66 AACTTAGACTTTACAAAAAATGGTGGGAAAAAACCTTTCTTGCGAAACGAAAGCATCAATATGAT
* *
2347817 GTATACTGAA-GAGAAGACTATGTTTATGGTGCCTTATCCTGAAAAATAATGGGGATTAGTATGA
131 GTATCCT-AATGAGAAGACTATGTTTATGGTGCCTTATCCTG-AAAAGAATGGGGATTAGTATGA
* * * * *
2347881 GTATTCATGTTTGTCTTATTTATGAGACAAACTTTAATTCTATCAAAAACGGCGAAAGGAAAAGT
194 GTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAAGGTGGAAGGAAAAGT
* * * *
2347946 TTTTCTTGCGACACCAAAGCATCAATTTCAGGTATCCTAATGAGGGGAATGTG-TTTTGAC-TCC
259 TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTG-CTTCA
* * * * ** * * * * * *
2348009 CAATCTCG----TAATGGAGAA-TGTCATAATAATCAATGCATGTCTTATTTAGGGGATGAACTT
323 CAATCTTGAAAAGAATGGA-AACAGTTACGAGAATCGATGCTTGTCTTATTTAAGGTATGAACAT
* * * * *
2348069 TGATTTT-AAGGAAAATAGGACAAAGAAAAGATTTCCATAC-AAA-AAAATCATTAGTATCTTTT
387 T-ATTTTAAAGGAAAATAGG-CAAAGAAAAGATTCCCATGCAAAAGAAAATCATCAATATCATTT
*
2348131 ATCCTAATGAGGATAATGTGTTTAT
450 ATCCTAATGAGGAGAATGTGTTTAT
* * * * * *
2348156 AGTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCTAAGATTGTCTCATTTGAGGCATG
1 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACG
* * * * *
2348221 AACTTAGACTTTACAAAAAACGGTGGGAAAAAAACCTTTTTTGCGAAACAAAAGCAACAACATGA
66 AACTTAGACTTTACAAAAAATGGTGGG-AAAAAACCTTTCTTGCGAAACGAAAGCATCAATATGA
* * * *
2348286 TGTATCCTTATGAGAAGACTATGTTTATGTTACCTTATCCTGAAAAGAATAGGGATTAGTATGAG
130 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAG
* * * *
2348351 CATTCATGTTTGTTTTATTT-A-AGACAAACTTTGATTCTATCAAAAATGATGGAAGGAAAAGTT
195 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAAGGTGGAAGGAAAAGTT
* * * ** *
2348414 TTTCTTGCGACATCAAAGCTTCAATGTCATGTATCCTAATAAAGGGAATGCATTTTTACTTCACA
260 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCACA
* * * * ** *
2348479 TTCTTGAAAAGAACT-GAGACAGTTACGAGAATCAATTCTTGTCTTATTTAAGGTATGAATGTTG
325 ATCTTGAAAAGAA-TGGAAACAGTTACGAGAATCGATGCTTGTCTTATTTAAGGTATGAACATTA
* *
2348543 TTTTAAAGGAAAATAGGCAAAGAAAAGATTCCCATGCAAAATAAAATCACCAATATCATTTATCC
389 TTTTAAAGGAAAATAGGCAAAGAAAAGATTCCCATGCAAAAGAAAATCATCAATATCATTTATCC
* *
2348608 TAATAAGGAGAATGCGTTTAT
454 TAATGAGGAGAATGTGTTTAT
* * * * *
2348629 AGTGCCTAATCAC-AAATGAAAGATGATCATTACTAGAATCCAAGATTGTCTCATTTGAGGCATG
1 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACG
* *
2348693 AACTTAGACTTTACAAAAAACGGTGGGAAAAAAGCCTTTCCTGCGAAA
66 AACTTAGACTTTACAAAAAATGGTGGGAAAAAA-CCTTTCTTGCGAAA
2348741 TGAATATCAT
Statistics
Matches: 3652, Mismatches: 599, Indels: 231
0.81 0.13 0.05
Matches are distributed among these distances:
464 1 0.00
465 77 0.02
466 13 0.00
467 82 0.02
468 13 0.00
469 159 0.04
470 117 0.03
471 61 0.02
472 610 0.17
473 1131 0.31
474 506 0.14
475 438 0.12
476 343 0.09
477 94 0.03
478 7 0.00
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (474 bp):
AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACG
AACTTAGACTTTACAAAAAATGGTGGGAAAAAACCTTTCTTGCGAAACGAAAGCATCAATATGAT
GTATCCTAATGAGAAGACTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGT
ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAAGGTGGAAGGAAAAGTTT
TTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCACAA
TCTTGAAAAGAATGGAAACAGTTACGAGAATCGATGCTTGTCTTATTTAAGGTATGAACATTATT
TTAAAGGAAAATAGGCAAAGAAAAGATTCCCATGCAAAAGAAAATCATCAATATCATTTATCCTA
ATGAGGAGAATGTGTTTAT
Found at i:2348791 original size:149 final size:150
Alignment explanation
Indices: 2348594--2348894 Score: 401
Period size: 150 Copynumber: 2.0 Consensus size: 150
2348584 TAAAATCACC
* * *
2348594 AATATCATTTATCCTAATAAGGAGAATGCGTTTATAGTGCCTAATCACAAA-TGAAAGATGATCA
1 AATATCATTTATCCTAATAAGGAGAATACGTTTATAGTGCCCAATCACAAATTGAAAGAAGATCA
* * *
2348658 TTACTAGAATCCAAGATTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAAACGGTGGGAAA
66 TTACTAGAATCCAAGATTATCTCATTTAAGGCATGAACTTAGACTTCACAAAAAACGGT-GGAAA
2348723 AAA-GCCTTTCCTGCGAAATG
130 AAAGGCCTTTCCTGCGAAATG
* * * *
2348743 AATATCATTTATCTTAA-AGAGGAGAATATGTTTATAGTTCCCAATCACAAATTGAATGAAGATC
1 AATATCATTTATCCTAATA-AGGAGAATACGTTTATAGTGCCCAATCACAAATTGAAAGAAGATC
* * * * ***
2348807 ATTACTAGAATCCATGTTTATCTCATTTAAGGCATGAACTTAGGCTTCATAAAATTTGGTGGAAA
65 ATTACTAGAATCCAAGATTATCTCATTTAAGGCATGAACTTAGACTTCACAAAAAACGGTGGAAA
*
2348872 AAAGGCCTTTCTTGCGAAATG
130 AAAGGCCTTTCCTGCGAAATG
2348893 AA
1 AA
2348895 AGCATCAATA
Statistics
Matches: 131, Mismatches: 18, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
148 1 0.01
149 52 0.40
150 78 0.60
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.31
Consensus pattern (150 bp):
AATATCATTTATCCTAATAAGGAGAATACGTTTATAGTGCCCAATCACAAATTGAAAGAAGATCA
TTACTAGAATCCAAGATTATCTCATTTAAGGCATGAACTTAGACTTCACAAAAAACGGTGGAAAA
AAGGCCTTTCCTGCGAAATG
Found at i:2349647 original size:475 final size:476
Alignment explanation
Indices: 2348743--2356214 Score: 8139
Period size: 475 Copynumber: 15.8 Consensus size: 476
2348733 CTGCGAAATG
* * * *
2348743 AATATCATTTATCTTAAAGAGGAGAATATGTTTATAGTTCCCAATCACAAATTGAATGAAGATCA
1 AATATCATTTATCCTAAAGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
* * * * * * * *
2348808 TTACTAGAATCCATGTTTATCTCATTTAAGGCATGAACTTAGGCTTCATAAAATTTGGT-GGAAA
66 TTACTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAA
* * * *
2348872 AAAGGCCTTTCTTGCGAAATGAAAGCATCAATATGATGCATCCTAATGAGAATACTATTTTTATG
131 AAA-GCCTTTCTTGCGAAACGAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATG
* * *
2348937 GTGCCTAAT-CTAGAAAAGAATGGGGATAAGTATGAGTATTCATGTTTGTCTTTTTTAAGAGACA
195 GTGCCTTATCCT-GAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACA
* * * * * *
2349001 AACTTTAATTCTATCAAAAACAGTGAAAAGAAAAGCTTTTCTTGCAACATCAAAGCATCAATGTC
259 AACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACATCAAAGCATCAATGTC
* * * * *
2349066 ATGTATGCAAATGAAGGGAATGTGTTTTGTCTTCATAATCTTG-AAAGGAATTGAGATAAT-TT-
324 ATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCACAATCTTGTAAA-GAA-TG-GAGAATGTTA
* * * * *
2349128 TGAGAATCAATTCCTGTCTTATTTAAGGTAAGAACATT-ATTTTAAAGGAAAATAGGCAAAGAAA
386 CGAGAATCGATTCTTGTCTTATTTAAGGGATGAACATTGATTTTAAAGGAAAATAGGCAAAGAAA
*
2349192 AGATTCCCATGCAAAAAAAAATCATC
451 AGATTCCCATGCAAAAGAAAATCATC
* * * * * *
2349218 AATACCATTTATCCTAAAGAAGATAACATATTTATAGTGCCTAATCACAAAATGAATGAATATCA
1 AATATCATTTATCCTAAAGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
* *
2349283 TTACTTA-AATCCAAGTTTGTCTCCTTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGGAA
66 TTAC-TAGAATCCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAA
* *
2349347 AAAAGCCTTTCTTGCGAAACGAAAGCATCAATGTGATGTATCCTAATGAGAAGAGTATGTTTATG
130 AAAAGCCTTTCTTGCGAAACGAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATG
* * *
2349412 GTGCCTTATCATGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTATGAGATAA
195 GTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* * * * * *
2349477 ACTTTGATTTTATCAAAAACAGTGGAAGGAAAAGTTTTTCTTGTGATACCAAAGCATCAATTTCA
260 ACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACATCAAAGCATCAATGTCA
* * *
2349542 TGTATCCTAATGAAGGGAATGTGTTTTGAC-ACCCAATCTTGTAAAGAATGGAGAATGTTACGAG
325 TGTATCCTAATGAAGGGAATGTGTTTTGGCTTCACAATCTTGTAAAGAATGGAGAATGTTACGAG
* * * * * *
2349606 AATCGATACATGTCTTATTTAGGGGATAAACTTTGATTTT-AAGAAAAATAGGACAAAGAAAAGA
390 AATCGATTCTTGTCTTATTTAAGGGATGAACATTGATTTTAAAGGAAAATAGG-CAAAGAAAAGA
** * * *
2349670 TTTTCATACCAAA-AAAATCATT
454 TTCCCATGCAAAAGAAAATCATC
* * * * *
2349692 AATATCATTTATCCTACAGAGGAGAATGTTTTTATAATGCCTAATTACAAAATGAATGAAGATCA
1 AATATCATTTATCCTAAAGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
* * * *
2349757 TTTCTAGAATCCAAGTTTGTCTCATTCGAGGCACGAACGTAGACTTTATAAAAATTGGTGGGAAA
66 TTACTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAA
* * * * *
2349822 AAAGCTTTTCTTGCAAAACCAAAGCATCAATATGATGTATCCTAAAGACAAGTA-TATGTTTATG
131 AAAGCCTTTCTTGCGAAACGAAAGCATCAATATGATGTATCCTAATGAGAAG-ACTATGTTTATG
* * *
2349886 GTGCGTTATCCTGAAAAGAATGGAGATTAGTATGAGTATTCATGTTTGCCTTATTTAAGAGACAA
195 GTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* *
2349951 ACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTGCTTGCGACATCAAAGCTTCAATGTCA
260 ACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACATCAAAGCATCAATGTCA
* * ** * ** * *
2350016 TGTATCCTAATAAAGGGAATGTATTTTTCCTTCACATTCTTG-AGAAGAATTAAGACA-ATTATG
325 TGTATCCTAATGAAGGGAATGTGTTTTGGCTTCACAATCTTGTA-AAGAATGGAGA-ATGTTACG
* * * **
2350079 AGAATCGATTCTTGTCTTATTTATGGTATGAACATT-AATTTAAAGGAAAATACACAAAGAAAAG
388 AGAATCGATTCTTGTCTTATTTAAGGGATGAACATTGATTTTAAAGGAAAATAGGCAAAGAAAAG
2350143 ATTCCCATGCAAAAGAAAATCATC
453 ATTCCCATGCAAAAGAAAATCATC
* * * * * * *
2350167 CATATCATTTATTCTCAGGAGGAGAATAAGTTTATAGTTCCCAATCACAAAATGAATGAAGATCA
1 AATATCATTTATCCTAAAGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
* * * **
2350232 TTACTAGAATCCAAGATTGTCTCATTTGAGGCATGAACATTAGACTATACAAAAAACGGTGGG-A
66 TTACTAGAATCCAAGTTTGTCTCATTTGAGGCACGAAC-TTAGACTTTACAAAAATTGGTGGGAA
* * * * * * * *
2350296 AAAAGCCTTTCCTGCAAAACGGATGTATCAATATGATGCATCCTAATGAGAAGACTATGTCTGTG
130 AAAAGCCTTTCTTGCGAAACGAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATG
* * *
2350361 TTGCCTTATCCTGAAAAGAATAGGCG-TTAGTATAAGTATTCATGTTTGTCTTATTTAAGAGACA
195 GTGCCTTATCCTGAAAAGAAT-GGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACA
* * *
2350425 AACTTTGATTCTATCAAAAATGGTGGAAGGAAAAGTTTTTCTTGCGACATCGAAGCTTCAATGAT
259 AACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACATCAAAGCATCAATG-T
* ** * ** * * *
2350490 GATGTATCCTAATGAAGACATTGCATTTTTGCTTCACATTCTTGAAAAGAACT-GAGACA-GTTA
323 CATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCACAATCTTGTAAAGAA-TGGAGA-ATGTTA
* * * *
2350553 CAAGAATCGATTCTTGTCTTATTTATGGTATGAACATT-ATTTTAAAGG-AAATTGGCAAAGAAA
386 CGAGAATCGATTCTTGTCTTATTTAAGGGATGAACATTGATTTTAAAGGAAAATAGGCAAAGAAA
2350616 AGATTCCCATGCAAAAGAAAATCATC
451 AGATTCCCATGCAAAAGAAAATCATC
* * * * *
2350642 CATATCATTTATCCTAATGAGGAGAATATGTTCATTGTTCCTAATCACAAAATGAATGAAGATCA
1 AATATCATTTATCCTAAAGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
* *
2350707 TTACTTGAATCCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGTTGGGAAA
66 TTACTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGG-AA
* * * * * *
2350772 AAAAGCCTTTCTTGCAAAAGGAAAGCATCAATGTGGTGTATCCTAAAGAGAA-ATCTATGTTTAC
130 AAAAGCCTTTCTTGCGAAACGAAAGCATCAATATGATGTATCCTAATGAGAAGA-CTATGTTTAT
* * * *
2350836 GGTGCCTTATCCTGAAAAGAGTGGGGATTAGTTTGAGTATTCATGTTTGCCTTATTTGAGAGACA
194 GGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACA
* * * * ** * *
2350901 AACTTTGATTCTATCAAAAACCAGTGAAAAGAAAA-TCTTTTCTTGTGACGCCAAACCATCAATT
259 AACTTTGATTCTATCAAAAA-CGGTGGAAGGAAAAGT-TTTTCTTGCGACATCAAAGCATCAATG
* * * * * *
2350965 TCATGTTTCCTAAT-AAGGGAATGTG-TTTGGCTTCCCAAACTT-TAAAAGATTGGAGACTATTA
322 TCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCACAATCTTGT-AAAGAATGGAGAATGTTA
* * * * * * *
2351027 TGAGAATCGA-TCTTTGTTTTATTTAAAGGATCAGCTTTGATTTT-AAGAAAAATAGGGCAAAGA
386 CGAGAATCGATTC-TTGTCTTATTTAAGGGATGAACATTGATTTTAAAGGAAAATA-GGCAAAGA
* *
2351090 AATGATTTCCATGCAAAAGAAAATCATC
449 AAAGATTCCCATGCAAAAGAAAATCATC
* * * * *
2351118 AATATTATTTATCATAACA-AGGAAAATGTGTTTATAGTGCTTAATCACAAAATGAATGAAGATC
1 AATATCATTTATCCTAA-AGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATC
* * * * * * **
2351182 ATTACGAGAATCCATGTTTGTCTCTTTTGATGCCCGAACTTAGACTTTATGAAAAA-TGGTGCAA
65 ATTACTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTA-CAAAAATTGGTGGGA
* * *
2351246 AAAAAGCCTTTCTTGCGAAAAGAAAGCATCAATATGATATATCTTAATGAGAAGACTATGTTTAT
129 AAAAAGCCTTTCTTGCGAAACGAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTAT
** * * * *
2351311 ATTGCCTTATCCTGAAAA-AAAGAGAGATTAGTATGAGTATTCAAGTTTGCCTTATTTAAGAGAC
194 GGTGCCTTATCCTGAAAAGAATG-GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAC
* ** * * *
2351375 AAACTTTGATTCTAACAAAAACGAAGGAAGGAAAAGTTTTTTTTGCAACAACAAAGCATCAATGT
258 AAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACATCAAAGCATCAATGT
* *
2351440 CATGTATCCTAATGAAGGGAATGTGTTTTGGGTTCACAATCTTGAAAAGAACT-GAG-ATAGTTA
323 CATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCACAATCTTGTAAAGAA-TGGAGAAT-GTTA
* *
2351503 CGAGAATCGATTCTTGTCTTATTTAAGGTATGAACATTG-TTTTAAAGGAAAATAGGCAAAAAAA
386 CGAGAATCGATTCTTGTCTTATTTAAGGGATGAACATTGATTTTAAAGGAAAATAGGCAAAGAAA
*
2351567 AGATTCCAATGCAAAAGAAAATCATC
451 AGATTCCCATGCAAAAGAAAATCATC
* * * * *
2351593 AATATCAATTATCCTAATGAGGAGAATATGTTTATTA-TGCCCAATCACAAAATGATTGAAGACC
1 AATATCATTTATCCTAAAGAGGAGAATATGTTTA-TAGTGCCTAATCACAAAATGAATGAAGATC
* * * * **
2351657 ATTACTAGAATCCAAGTTTGTCTTATTTAAAGCACGAACTTAGTA-TTTACAAAACTTGGTTAGA
65 ATTACTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACTTAG-ACTTTACAAAAATTGGTGGGA
* * *
2351721 AAAAAGCCTTTCTTGTGAAACGAAAGCATCAATATGACGTATCCTAAAGAGAAGACTATGTTTAT
129 AAAAAGCCTTTCTTGCGAAACGAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTAT
* * * * * *
2351786 GGTGCCCTATCCAGAAAAGAATGGAGATAAGTTTGAGTATTCATGTTTGTCTTATTTAAGGGACA
194 GGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACA
* * * *
2351851 CAA-TTTGGTTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGTGACACCAAAGCATCAATTT
259 -AACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACATCAAAGCATCAATGT
* ** ** * *
2351915 CATGTATCCTAATGAAGGGAATATGTTTTGGC-TCTGAATCTCATAAAGAATGGAGATTGTTATG
323 CATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCACAATCTTGTAAAGAATGGAGAATGTTACG
* * * * *
2351979 AGAATCGATGCTTGCCTTGTTTAAGGGATGAACTTTCATTTT-AAGGAAAATAGGGCAAAGAAAA
388 AGAATCGATTCTTGTCTTATTTAAGGGATGAACATTGATTTTAAAGGAAAATA-GGCAAAGAAAA
*
2352043 GATTTCCATGCAAAAGAAAATCATC
452 GATTCCCATGCAAAAGAAAATCATC
* * * * *
2352068 AATATCACTTATCCTAATGAGGAGAATGTGTTTATTA-TGCCTAATTACGAAATGAATGAAGATC
1 AATATCATTTATCCTAAAGAGGAGAATATGTTTA-TAGTGCCTAATCACAAAATGAATGAAGATC
* * ** ** ** **
2352132 ATTACTAGAATCCATGTTTGTTTTTTTTGAACCAAAAACTTAGACTTTACCAAAAA-TGGAAGGA
65 ATTACTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTA-CAAAAATTGGTGGGA
* * * * *
2352196 AACAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCGTAATGAGAAGACAAAGTTTAT
129 AAAAAGCCTTTCTTGCGAAACGAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTAT
* * * * *
2352261 GGTGCCTAATCCGGAAAAGAATAGGGATTAGTGA-GAGTATTTATGTTTGTCTTATTTGAGAGAC
194 GGTGCCTTATCCTGAAAAGAATGGGGATTAGT-ATGAGTATTCATGTTTGTCTTATTTAAGAGAC
* * * *
2352325 AAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTATTCTTGCGACATCAAAGCATCAATGT
258 AAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACATCAAAGCATCAATGT
* * * ** * *
2352390 CTTGTATCCTAATAAAGGGAATGCGTTTCAGCTTCACAATCTTGAAAAGAACT-GAGACA-ATTA
323 CATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCACAATCTTGTAAAGAA-TGGAGA-ATGTTA
* *** * ** * * *
2352453 CGAGAATTGATTCCCATCCTT-TTTAAGGTACAAACATT-ATTTTAAAGAAAAATAAGCAAATAA
386 CGAGAATCGATTCTTGT-CTTATTTAAGGGATGAACATTGATTTTAAAGGAAAATAGGCAAAGAA
*
2352516 AAGATTCCTATGCAAAAGAAAATCATC
450 AAGATTCCCATGCAAAAGAAAATCATC
* *
2352543 AATATCATTTATCTTAATA-AGGATAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATC
1 AATATCATTTATCCTAA-AGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATC
* * * * *
2352607 ATTACTAGAATCCAAGTTTATCACTTTTGAGGCACGAACTTAGACTTTATGAAAAA-TAGT-GGA
65 ATTACTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTA-CAAAAATTGGTGGGA
* *
2352670 AAAAAGCCTTTCTTGTGAAATGAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTAT
129 AAAAAGCCTTTCTTGCGAAACGAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTAT
** * *
2352735 ATTGCCTTATCCT-AACAA-AATGGGGATTAGTTTGAGTATTCATGATTGTCTTATTTAAGAGAC
194 GGTGCCTTATCCTGAA-AAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAC
* ** * * * * *
2352798 AAACTTTGATT-TCATCAGAAATAGTGGAAAGAAAAGCTTTTCTTGCGACACCGATGCATCAATG
258 AAACTTTGATTCT-ATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACATCAAAGCATCAATG
* * * *
2352862 TTATGTATCCTAATG-AGGGAATGTGTTTTGGCTTTC-CAAACATT-AAAAGAATGCA-AACTGT
322 TCATGTATCCTAATGAAGGGAATGTGTTTTGGC-TTCACAATC-TTGTAAAGAATGGAGAA-TGT
* * * * * *
2352923 TACGATAATCGATGCTTATCTTATTTAAGGGATGAGCTTTGATTTTACAA--AAGATAGGGCAAA
384 TACGAGAATCGATTCTTGTCTTATTTAAGGGATGAACATTGATTTTA-AAGGAAAATA-GGCAAA
* * ** *
2352986 GAATAGATTTCCAAAC-AAA-AAAATCATT
447 GAAAAGATTCCCATGCAAAAGAAAATCATC
* * * *
2353014 AATATCTTTTATCCTAATA-AGGTGAATGTGTTTATAGTGCCTAACCACAAAATGAATGAAGATC
1 AATATCATTTATCCTAA-AGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATC
* * * * * * *
2353078 TTTACTAGAATCCATA-TTTGTCACTTTTAAGGCACGAACTTAGACTTTACAAAAATTTGTCGAA
65 ATTACTAGAATCCA-AGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGA
* *
2353142 AAAAAGTCTTTCTT-----------GCATTAATATGATGTATCCTAATGAGAAGACTATGTTTAT
129 AAAAAGCCTTTCTTGCGAAACGAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTAT
* * * * * *
2353196 GTTGCCTTATCTTGAAAAGAATAGGGATTAGTATGAGTATTCAAGTTTGTCTGATTTAAGAGGCA
194 GGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACA
* * * ** * *
2353261 AACTTTGATTCTATCAAAAATGGTGGAAGGAAAAGTTTCTCATGCGACCCCAAAGCACCAATTTC
259 AACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACATCAAAGCATCAATGTC
* * ** * * * *
2353326 ATGTATCCTAATGAAGGGAATGTGTCTTGGC-TCCCAATCTCATAAAAAATGGAGATTATTATGA
324 ATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCACAATCTTGTAAAGAATGGAGAATGTTACGA
* * * * * * * *
2353390 GAATTGATGCTTGTCTTCTTTAAGGAATGAACTTTGATTTT-AAGAAAAATGGGGCAATGAAAAG
389 GAATCGATTCTTGTCTTATTTAAGGGATGAACATTGATTTTAAAGGAAAAT-AGGCAAAGAAAAG
*
2353454 ATTTCCATGCAAAAGAAAATCATC
453 ATTCCCATGCAAAAGAAAATCATC
* * * * * *
2353478 TATATCATTTATCCTAGTA-AGGAGAATGTGTTTGTAGTACTTAA-CAACAAAATGAATGAAGAT
1 AATATCATTTATCCTA-AAGAGGAGAATATGTTTATAGTGCCTAATC-ACAAAATGAATGAAGAT
* * *
2353541 CATTACTAGAATCCATGTTTGTCTCTTTTAAGGCACGAACTTAGACTTTACAAAGAA-TGGTGGG
64 CATTACTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAA-AATTGGTGGG
* * * * * *
2353605 AAAAAATCCTTTCTTACGAAACGAAAGCATCGATATGATGTAT-CTTATAGAAAAGATTATGTTT
128 AAAAAAGCCTTTCTTGCGAAACGAAAGCATCAATATGATGTATCCTAAT-GAGAAGACTATGTTT
* ** * *
2353669 ATGGTGCCTTATCCTAAAAAGAATAAGGATTAGTATGAATATTCATGTTTGTCTTATTTAAGACA
192 ATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGA
* * * * * *
2353734 CAAACTTTCATTCTATCATAAATGGTGGAAGGAAAAGTTTTTCTGGCAACATCAAAGTATCAATG
257 CAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACATCAAAGCATCAATG
* * * * * * * * * *
2353799 TCTTGTAGCCTAATAAAGGGAATGTGTTTTGGCTTCGCATTATTGAAAAGAATTGAGATTGTTAT
322 TCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCACAATCTTGTAAAGAATGGAGAATGTTAC
*
2353864 GAGAATCGATTCTTGTCTTATTTAAGGTG-TAAACATTG-TTTTAAAGGAAAATAGGCAAAGAAA
387 GAGAATCGATTCTTGTCTTATTTAAGG-GATGAACATTGATTTTAAAGGAAAATAGGCAAAGAAA
2353927 AGATT--C---C--------ATC--C
451 AGATTCCCATGCAAAAGAAAATCATC
* * *
2353938 -ATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATAAAATGAATGAAGATCA
1 AATATCATTTATCCTAAAGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
* * * * * *
2354002 TTACTAGAATCCATGTTTGTCTCTTTTAAAGTACGAACTTAGACTTTACAAAAAATGGTGGGAAA
66 TTACTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAA
* * * * * *
2354067 AAGGCCTTCCTTGCAAAATGAAAGCATCAATATGATGTATCCTAATAAGAAGACTATGTTTATGT
131 AAAGCCTTTCTTGCGAAACGAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGG
* * * * *
2354132 TGTCTTCTCCTGAAAAGAATAGGGATTAGTATGAGTGTTCATGTTTGTCTTATTTATGAGACAAA
196 TGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAA
* * * * * * * * * * *
2354197 CTTTGATTCCATCAAAAACAGTGGAAAGAAACGCTTTTCTGGTGACAGCCAAGCATTAATGTCTT
261 CTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACATCAAAGCATCAATGTCAT
* * * ** * * *
2354262 GCATCCTAA-CAAGGGAATGTGTTTTGGCTTCCCAAAGATT-AAAAGAATAGA-AACCGTTACGA
326 GTATCCTAATGAAGGGAATGTGTTTTGGCTTCAC-AATCTTGTAAAGAATGGAGAA-TGTTACGA
* * * * *
2354324 GAATCGATGCCTGTCATATTTAAGGGATGAACATT-CTTTTAAAGGAAAATAGGCGAAGAAAAGA
389 GAATCGATTCTTGTCTTATTTAAGGGATGAACATTGATTTTAAAGGAAAATAGGCAAAGAAAAGA
* * *
2354388 TTTCCAAGCAAAAAAAAATCATC
454 TTCCCATGCAAAAGAAAATCATC
* * * * * *
2354411 AATATCATTTATCCTAAAGAAGAGATTGTATTTATTA-TGCCTAATCATAAAGTGAATGAAGATC
1 AATATCATTTATCCTAAAGAGGAGAATATGTTTA-TAGTGCCTAATCACAAAATGAATGAAGATC
* **
2354475 ATTACTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTATACAAAAATTCAT-GGAA
65 ATTACTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAA
* *
2354539 AAAAGCCTTTCTTGCGAAACGAATGCATCAATATGATGTATCATAATGAGAAGACTATGTTTATG
130 AAAAGCCTTTCTTGCGAAACGAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATG
* *
2354604 GTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTATCTTATTTAAAAGACAA
195 GTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* *
2354669 ACTTTGATTCTATCAAAAATGGTGGAAGGAAAAGTTTTTCTTGCGACATCAAAGCATCAGTGTCA
260 ACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACATCAAAGCATCAATGTCA
* * * *
2354734 TGTATCCTAAAGACGGGAATGTGTTTTGGCATCACAA-CTT-TGAAAGGAATTGAGACAAT-TT-
325 TGTATCCTAATGAAGGGAATGTGTTTTGGCTTCACAATCTTGT-AAA-GAA-TG-GAGAATGTTA
* * *
2354795 TGAGAATCGATTCTTGTCTTATTTAAGGTATGAACATTG-TTTTAAAGGAAAATTGGCAAAGAAA
386 CGAGAATCGATTCTTGTCTTATTTAAGGGATGAACATTGATTTTAAAGGAAAATAGGCAAAGAAA
* * *
2354859 ATATTCCTATGCAAAAGAAAATTATC
451 AGATTCCCATGCAAAAGAAAATCATC
* * * *
2354885 AATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCGTAATCACAAAGTAAATGAAGATCA
1 AATATCATTTATCCTAAAGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
* * *
2354950 TTACTAGAATCCAAGTTTGTCTCATTTGAGGTACGAACTTAGACTCTACAAAAATTGGTGAGAAA
66 TTACTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAA
* * * * * *
2355015 CAAGCCTTTCTTGCGAAACGAATGCATCAATAAGATGCATCCTAATGAGAAGACTATATTTTTGG
131 AAAGCCTTTCTTGCGAAACGAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGG
* * ** * * * *
2355080 TGACTAATCCAAAAAAGAATGGGGATTAGTATAAGTTTTCATGTTTGTGTTATTTAAGA-ATTAA
196 TGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGA-CAA
** * ** * *
2355144 ACTTTGATTCTATCAAAAACAATGGAAAGAAAAACTTTTCTTGTGACATCAAAGCATCAATGTAA
260 ACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACATCAAAGCATCAATGTCA
* * ** *
2355209 TGTATCCTAAAGAAGGGAATGTGTTTTGGC-TCCCAATCTCATAAAGAATGGAGATTGTTACGAG
325 TGTATCCTAATGAAGGGAATGTGTTTTGGCTTCACAATCTTGTAAAGAATGGAGAATGTTACGAG
* * * * * *
2355273 AATTGATGCTTGTTTTTTTTAAGGGATGAACTTTGATTTT-GAGGAAAATAGGGCAAAGAAAAGA
390 AATCGATTCTTGTCTTATTTAAGGGATGAACATTGATTTTAAAGGAAAATA-GGCAAAGAAAAGA
* *
2355337 TTTCCATGCAAAAAAAAAATCATC
454 TTCCCATGC-AAAAGAAAATCATC
* * ** *
2355361 AATATCATTTATCCTAAAGAGGAGAATGTGTTTGTAACGCCTAATCATAAAATGAATGAAGATCA
1 AATATCATTTATCCTAAAGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
* * * *
2355426 TTGCTAAAATCCAAGTTTGTCTCATTTGAGGCATGAACTTAGACTTTA-AAAAATTTGGTAGGAA
66 TTACTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAA-TTGGTGGGAA
* * * * *
2355490 AATAGCCTTTCCTGCAAAACGAAAGCATCAATATGATGTATCCTAAAT-AGAAGGCAATGTTTAT
130 AAAAGCCTTTCTTGCGAAACGAAAGCATCAATATGATGTATCCT-AATGAGAAGACTATGTTTAT
* * * * *
2355554 GGTGCC-AAGT-TTGGAAAAGAATGGGGAATAGTATGAGTTTTTTATGTTTGTCTTATTTAAGAG
194 GGTGCCTTA-TCCT-GAAAAGAATGGGGATTAGTATGAG-TATTCATGTTTGTCTTATTTAAGAG
* * * *
2355617 ACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTTTTACGACGTCAAAGTATCAAT
256 ACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACATCAAAGCATCAAT
* *
2355682 GTCATGTTTCCTAATGAAGGGAATGTGTTTTGGCATCACAATCTTG-AAACGAACT-GAG-ATAG
321 GTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCACAATCTTGTAAA-GAA-TGGAGAAT-G
* **
2355744 TTACGAGAATCGAATCTTGTCTTATTTAAGATATGAACATTG-TTTTAAAGGAAAATAGGCAAAG
383 TTACGAGAATCGATTCTTGTCTTATTTAAGGGATGAACATTGATTTTAAAGGAAAATAGGCAAAG
*
2355808 AAAAGATTCCCATACAAAAGAAAATCATC
448 AAAAGATTCCCATGCAAAAGAAAATCATC
* * * **
2355837 AATATTATTTATCGTAATGAGGAGAATATGTTTATAGTGTTTAATCACAAAATGAATGAAGATCA
1 AATATCATTTATCCTAAAGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
* * * * ** * *
2355902 TTACTAAAATCCATGTTTGTCTAATTTGAGGTACGAACTTAGAAATTACAAAATTTGGTGAGAAA
66 TTACTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTG-GGAA
* * * * * * *
2355967 AAAATCCTTTTTTGCGAAATGAAAGCATCAATACGATTTATCCTAAAGAGAAGACT-TGTTAATG
130 AAAAGCCTTTCTTGCGAAACGAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATG
* * * * *
2356031 GCGCCTTATCCTGAAAAGAATGAGGATTAATATCAGTATTCATGTTTGTCTAATTTAAGAGACAA
195 GTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* * * *
2356096 ACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGTGATACCAAAGCATCAATTTCA
260 ACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACATCAAAGCATCAATGTCA
* * *
2356161 TGTGTCCTAATGAAGGGAATGTGTTTTGGC-TCTA-ATTCTCGTAAAGAATGGAGA
325 TGTATCCTAATGAAGGGAATGTGTTTTGGCTTC-ACAATCTTGTAAAGAATGGAGA
2356215 CTGTGATGAG
Statistics
Matches: 5878, Mismatches: 944, Indels: 350
0.82 0.13 0.05
Matches are distributed among these distances:
457 2 0.00
458 98 0.02
459 282 0.05
460 9 0.00
461 55 0.01
462 184 0.03
463 23 0.00
464 128 0.02
465 2 0.00
470 7 0.00
471 121 0.02
472 89 0.02
473 339 0.06
474 1037 0.18
475 2270 0.39
476 938 0.16
477 234 0.04
478 59 0.01
479 1 0.00
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (476 bp):
AATATCATTTATCCTAAAGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
TTACTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAA
AAAGCCTTTCTTGCGAAACGAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGG
TGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAA
CTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACATCAAAGCATCAATGTCAT
GTATCCTAATGAAGGGAATGTGTTTTGGCTTCACAATCTTGTAAAGAATGGAGAATGTTACGAGA
ATCGATTCTTGTCTTATTTAAGGGATGAACATTGATTTTAAAGGAAAATAGGCAAAGAAAAGATT
CCCATGCAAAAGAAAATCATC
Found at i:2356693 original size:789 final size:791
Alignment explanation
Indices: 2355481--2356911 Score: 1884
Period size: 789 Copynumber: 1.8 Consensus size: 791
2355471 TTAAAAAATT
* * *
2355481 TGGTAGGAAAATAGCCTTTCCTGCAAAACGAAAGCATCAATATGATGTATCCTAAATAGAAGGCA
1 TGGTAGGAAAAAAGCCTTTCCTGCAAAACGAAAGCATCAATATGAAGTATCCTAAATAGAAGACA
* *** * *
2355546 ATGTTTATGGTGCCAAGTTTGGAAAAGAATGGGGAATAGTATGAGTTTTTTATGTTTGTCTTATT
66 ATGTTTATGGTGCCAAATCCAGAAAAGAATGGGGAATAGTATGAGTTATTCATGTTTGTCTTATT
* * ** *
2355611 TAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTTTTACGACGTCAAAGT
131 TAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAGGAAAAGTTTTTCTTACGACCCCAAAGC
* * * *
2355676 ATCAATGTCATGTTTCCTAATGAAGGGAATGTGTTTTGGCATCACAATCTTGAAACGAACTGAGA
196 ATCAATGTCATGTATCCTAATAAAGGGAATGTGTTTTGGCATCACAATCTTCAAAAGAACTGAGA
* *
2355741 TAGTTACGAGAATCGAATCTTGTCTTATTTAAGATATGAACATTGTTTTAAAGGAAAATAGGCAA
261 GAGTT-----AATCG-A-CTTGTCTTATTTAAGATATGAACATTGATTTAAAGGAAAATAGGCAA
* * *
2355806 AGAAAAGATTCCCATACAAAAGAAAATCATCAATATTATTTATCGTAATGAGGAGAATATGTTTA
319 AAAAAAGATTCCCATACAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTA
** * * * * *
2355871 TAGTGTTTAATCACAAAATGAATGAAGATCATTACTAAAATCCATGTTTGTCTAATTT-GAGGTA
384 TAGTGCCTAATCAAAAAATGAAAGAAGATCATTACTAAAATCCATGTTTATCT-ATTTCGAAGCA
* * * * *
2355935 CGAACTTAGAAATTACAAAATTTGGTGAGAAAAAAATCCTTTTTTGCGAAATGAAAGCATCAATA
448 CGAACTTAGAAATTACAAAATATAGTG-GAAAAAAAGCCTTTCTTGCGAAACGAAAGCATCAATA
* * * * * *
2356000 CGATTTATCCTAAAGAGAAGA-CTTGTTAATGG-CGCCTTATCCTGAAAAGAAT-GAGGATTAAT
512 CGATGTATCCTAAAGAGAAGACCATGTTAATGGTC-CATAATAC-GAAAAAAATGGA-GATTAAT
*
2356062 ATCAGTATTCATGTTTGTCTAATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAA
574 ATCAGTATTCATGTTTGTCT--TATAAG-GA-AAACTTTGATTCTATCAAAAACGGTGGAAGGAA
2356127 AAGTTTTTCTTGTGATACCAAAGCATCAATTTCATGTGTCCTAATGAAGGGAATGTGTTTTGGCT
635 AAGTTTTTCTTGTGATACCAAAGCATCAATTTCATGTGTCCTAATGAAGGGAATGTGTTTTGGCT
2356192 CTAATTCTCGTAAAGAATGGAGACTGTGATGAGAAATAATGCACGAATCCATGGCTGTCCCTTTT
700 CTAATTCTCGTAAAGAATGGAGACTGTGATGAGAAATAATGCACGAATCCATGGCTGTCCCTTTT
2356257 GAAGCATGAACATATTTTGAAGAAAAA
765 GAAGCATGAACATATTTTGAAGAAAAA
* * * *
2356284 TGGTGGGAAAAAAGCCTTTCTTGCGAAACGAAAGGATCAATATGAAGTATCCT-AATGAGAAGAC
1 TGGTAGGAAAAAAGCCTTTCCTGCAAAACGAAAGCATCAATATGAAGTATCCTAAAT-AGAAGAC
* * *
2356348 AATGTTTATGGTGCTAAATCCAGAAAAGATTGGGGATTAGTATGAG-TATTCATGTTTGTCTTAT
65 AATGTTTATGGTGCCAAATCCAGAAAAGAATGGGGAATAGTATGAGTTATTCATGTTTGTCTTAT
* * **
2356412 TTAAGAGACAAACTTTGATTCTATTAAAAACATTGGAAGGAAAAGTTTTTCTTGTGACCCCAAAG
130 TTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAGGAAAAGTTTTTCTTACGACCCCAAAG
* * *
2356477 CATCAATTTCATGTATCGTAATAAAGGGAATGTGTTTTGGC-TCCCAATC-TCACAAAGAA-TG-
195 CATCAATGTCATGTATCCTAATAAAGGGAATGTGTTTTGGCATCACAATCTTCA-AAAGAACTGA
* * *
2356538 GAGA-TT-AT-G-CTTGTTTTATTTAAGGGT-TGAACTTTGATTTAAAGGAAAATAGGGCAAAAA
259 GAGAGTTAATCGACTTGTCTTATTTAA-GATATGAACATTGATTTAAAGGAAAATA-GGCAAAAA
* * * *
2356598 AAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGTAGAATGTGTTTATAG
322 AAAGATTCCCATACAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAG
* * *
2356663 TGCCTAATCAAAAAATGAAAGAAGATCATTACTAGAATCCATGTTTATCTCTTTCGAAGCATGAA
387 TGCCTAATCAAAAAATGAAAGAAGATCATTACTAAAATCCATGTTTATCTATTTCGAAGCACGAA
** * *
2356728 CTTAGACTTTACAAAATATAGTGGGAAAAAAGCCTTTCTTGCGAAACGAAAGCATCAATATGATG
452 CTTAGAAATTACAAAATATAGTGGAAAAAAAGCCTTTCTTGCGAAACGAAAGCATCAATACGATG
* * * * *
2356793 TATCCTAATGAGAAGACCATGTTTATGGTCCATAATACGAAAAAAATGGAGATTAGTGTGAGTAT
517 TATCCTAAAGAGAAGACCATGTTAATGGTCCATAATACGAAAAAAATGGAGATTAATATCAGTAT
* *
2356858 TCATGTTTGTCTTATGAGGAAAACTTTGATTCTATCAAAAATGGTGGAAGGAAA
582 TCATGTTTGTCTTATAAGGAAAACTTTGATTCTATCAAAAACGGTGGAAGGAAA
2356912 TTGATTCTAT
Statistics
Matches: 543, Mismatches: 77, Indels: 35
0.83 0.12 0.05
Matches are distributed among these distances:
784 33 0.06
785 2 0.00
786 4 0.01
788 121 0.22
789 154 0.28
790 1 0.00
791 1 0.00
792 2 0.00
798 2 0.00
799 3 0.01
800 4 0.01
801 12 0.02
802 112 0.21
803 92 0.17
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.31
Consensus pattern (791 bp):
TGGTAGGAAAAAAGCCTTTCCTGCAAAACGAAAGCATCAATATGAAGTATCCTAAATAGAAGACA
ATGTTTATGGTGCCAAATCCAGAAAAGAATGGGGAATAGTATGAGTTATTCATGTTTGTCTTATT
TAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAGGAAAAGTTTTTCTTACGACCCCAAAGC
ATCAATGTCATGTATCCTAATAAAGGGAATGTGTTTTGGCATCACAATCTTCAAAAGAACTGAGA
GAGTTAATCGACTTGTCTTATTTAAGATATGAACATTGATTTAAAGGAAAATAGGCAAAAAAAAG
ATTCCCATACAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCC
TAATCAAAAAATGAAAGAAGATCATTACTAAAATCCATGTTTATCTATTTCGAAGCACGAACTTA
GAAATTACAAAATATAGTGGAAAAAAAGCCTTTCTTGCGAAACGAAAGCATCAATACGATGTATC
CTAAAGAGAAGACCATGTTAATGGTCCATAATACGAAAAAAATGGAGATTAATATCAGTATTCAT
GTTTGTCTTATAAGGAAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGTGAT
ACCAAAGCATCAATTTCATGTGTCCTAATGAAGGGAATGTGTTTTGGCTCTAATTCTCGTAAAGA
ATGGAGACTGTGATGAGAAATAATGCACGAATCCATGGCTGTCCCTTTTGAAGCATGAACATATT
TTGAAGAAAAA
Found at i:2356917 original size:29 final size:29
Alignment explanation
Indices: 2356883--2356940 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
2356873 GAGGAAAACT
2356883 TTGATTCTATCAAAAATGGTGGAAGGAAA
1 TTGATTCTATCAAAAATGGTGGAAGGAAA
2356912 TTGATTCTATCAAAAATGGTGGAAGGAAA
1 TTGATTCTATCAAAAATGGTGGAAGGAAA
2356941 AGTTTTTCTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.41, C:0.07, G:0.24, T:0.28
Consensus pattern (29 bp):
TTGATTCTATCAAAAATGGTGGAAGGAAA
Found at i:2357905 original size:476 final size:475
Alignment explanation
Indices: 2356279--2362328 Score: 7081
Period size: 475 Copynumber: 12.7 Consensus size: 475
2356269 TATTTTGAAG
* * * * *
2356279 AAAAATGGTGGGAAAAAAGCCTTTCTTGCGAAACGAAAGGATCAATATGAAGTATCCTAATGAGA
1 AAAAATGGTAGGAAAAAAGCCTTTCTTGCGAAACGAAAGCATCAATATGATGTATCGTAAAGAGA
* * * *
2356344 AGACAATGTTTATGGTG-CTAAATCCAGAAAAGATTGGGGATTAGTATGAGTATTCATGTTTGTC
66 AGACTATGTTTATGGTGCCT-TATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTC
* ** * **
2356408 TTATTTAAGAGACAAACTTTGATTCTATTAAAAACATTGGAAGGAAAAGTTTTTCTTGTGACCCC
130 TTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACATC
* * * * *
2356473 AAAGCATCAATTTCATGTATCGTAATAAAGGGAATGTGTTTTGGC-TCCCAATC-TCACAAAGAA
195 AAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCACAATCTTGA-AAAGAA
* * * *
2356536 -T------G----GAG-AT-TATGCTTGTTTTATTTAAGGGTTGAACTTTGATTTAAAGGAAAAT
259 CTGAGACAGTTACGAGAATCGATGCTTGTCTTATTTAATGGATGAACTTTGATTTAAAGGAAAAT
* *
2356588 AGGGCAAAAAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGTAGAAT
324 A-GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
* * * *
2356653 GTGTTTATAGTGCCTAATCAAAAAATGAAAGAAGATCATTACTAGAATCCATGTTTATCTCTTTC
388 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCTTTT
* *
2356718 GAAGCATGAACTTAGACTTTACA
453 GAGGCACGAACTTAGACTTTACA
* * * * *
2356741 AAATATAGTGGGAAAAAAGCCTTTCTTGCGAAACGAAAGCATCAATATGATGTATCCTAATGAGA
1 AAAAATGGTAGGAAAAAAGCCTTTCTTGCGAAACGAAAGCATCAATATGATGTATCGTAAAGAGA
* * * * * *
2356806 AGACCATGTTTATGGT-CCATAATAC-GAAAAAAATGGAGATTAGTGTGAGTATTCATGTTTGTC
66 AGACTATGTTTATGGTGCC-TTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTC
** * * *
2356869 TTATGAGGAAAACTTTGATTCTATCAAAAATGGTGGAAGGAAATTGATTCTATCAAAAATGGTGG
130 TTAT----TTAA----GA---GA-C--AAA--CT---------TTGATTCTATCAAAAACGGTGG
*
2356934 AAGGAAAAGTTTTTCTTGCGACATCAAAGCATCAATGCCATGTATCCTAATGAAGGGAATGTGTT
170 AAGGAAAAGTTTTTCTTGCGACATCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTT
* * * * * * *
2356999 TCGGCTTCACAATCTTGAAAAGAACTAAAACATTTAGGAGAATCGATTCTTATCTTATTTAA-GG
235 TTGGCTTCACAATCTTGAAAAGAACTGAGACAGTTACGAGAATCGATGCTTGTCTTATTTAATGG
* * * *
2357063 TATGAACATT-ATTTTAAAGGAAAATAGGAAAAGAAAAGATTCCCATGTAAAAGAAAATCATCAA
300 -ATGAACTTTGA-TTTAAAGGAAAATAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAA
* * *
2357127 TATCATTTATCCTAATGAGGAGAATAT-TTTACT-GTGCCTAATCACAACATGAATGAAGACCAT
363 TATCATTTATCCTAATGAGGAGAATGTGTTTA-TAGTGCCTAATCACAAAATGAATGAAGATCAT
* * * * *
2357190 TACTAAAATCCAAGTTTGTCTCGTTTGAAGCATGAACTTAGACTTTACA
427 TACTAGAATCCATGTTTGTCTCTTTTGAGGCACGAACTTAGACTTTACA
* * *
2357239 AAAAATGGTGGGAAAAAAGCCTTTCTTGCAAAAC-AAAGCATCAATATGATGTATCCG-AATGAG
1 AAAAATGGTAGGAAAAAAGCCTTTCTTGCGAAACGAAAGCATCAATATGATGTAT-CGTAAAGAG
* * * * *
2357302 AAGACAATGTTTATGGTGCC-TAGTCCGGAAAAGAATGTGGATTAGTATGACTATTCATGTTTAT
65 AAGACTATGTTTATGGTGCCTTA-TCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGT
* * *
2357366 CTTATTTAAAAGTCAAACTTTGATTCTATCAAAAATGGTGGAAGGAAAAGTTTTTCTTGCGACAT
129 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACAT
* * * *
2357431 CAAAGCATCAATGGCATGTATCCTAATGAAGGGAATATGTTTTGGCTTCCCAATCTAGAAAAGAA
194 CAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCACAATCTTGAAAAGAA
* * *
2357496 CTGAGACAGTTATGAGGATCGATGCTTGTCATATTTAATGGATGAACTTTGATTTAAAGGAAAAT
259 CTGAGACAGTTACGAGAATCGATGCTTGTCTTATTTAATGGATGAACTTTGATTTAAAGGAAAAT
* * *
2357561 AGGGCAAAAAAAAGATTTCCATGCAAAAGAAAATCATCAATATCAATTATCCTGATGAGGAGAAT
324 A-GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
* * *
2357626 GTGTTTATAGTGCCTAATCACAAAATGAATGAACAGCATTACTAGAATTCATGTTTGTCTCTTTT
388 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCTTTT
2357691 GAGGCACGAACTTAGACTTTACA
453 GAGGCACGAACTTAGACTTTACA
* * * *
2357714 AAAAATGGTAGGAAAAAAGTCTTTCTTGCAAAATGAAAGCATCAATATAATGTATCGTAAAGAGA
1 AAAAATGGTAGGAAAAAAGCCTTTCTTGCGAAACGAAAGCATCAATATGATGTATCGTAAAGAGA
* * * * *
2357779 AGACTATGTTTATAGTGCTTTATCTTGAAAAGAATGGGGATTGGTATGAGTATTCATGTTTATCT
66 AGACTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCT
* *
2357844 TATTTGAGAGACAAACTTTGATTCTATCAAAAACGATGGAAGGAAAAGTTTTTCTTGCGACATCA
131 TATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACATCA
* * * * * *
2357909 AAGCGTCAACGTCATGTATCCTAATAAATGGAATGTGTTTTGGCTTCACAATCTAGACAAGAACT
196 AAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCACAATCTTGAAAAGAACT
* * *
2357974 GAGACAGTTACGAGAATTGATGCTTGTCTTATTTAGTGGATGAACATTGATTTAAAGGAAAATAG
261 GAGACAGTTACGAGAATCGATGCTTGTCTTATTTAATGGATGAACTTTGATTTAAAGGAAAATA-
* * * * *
2358039 GGCAAAAAAAAGATTTCCATGCAAAAGAAAATCATCAATATTATTTATCCAAAAGAGGAGAATTT
325 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
* * * *
2358104 ATTTACAGTGCCTAATCACAAAATGAATGACGATCATTACTAGAATCTATGTTTGTCTCTTTTGA
390 GTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCTTTTGA
2358169 GGCACGAACTTAGACTTTACA
455 GGCACGAACTTAGACTTTACA
* * * * * * * *
2358190 AAAAGTGGTAGGAAAAATGCCTTTCTTGTGTAATGAAAACATCAACATGATGTATTGTAAAGAGA
1 AAAAATGGTAGGAAAAAAGCCTTTCTTGCGAAACGAAAGCATCAATATGATGTATCGTAAAGAGA
* * * * *
2358255 AGACAATGTTTATGGTGCCTAATCCTGAGAAA-AATGGGGATTAGTATAACTATTCATATTTGTC
66 AGACTATGTTTATGGTGCCTTATCCTGA-AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTC
* * * *
2358319 TTATTTGAGTA-ACAAACTTTGATTCTATCAAAAAGGGTGGAAGGAAAGGTTTTTCTTGTGACAT
130 TTATTTAAG-AGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACAT
* * *
2358383 CAAAACATCAATGTCATGTACCCTAATGAAGGGAATGTGTTTTGGCTTCATAATCTTGAAAAGAA
194 CAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCACAATCTTGAAAAG--
* * * * * * *
2358448 AACCATCA-ATA-TTACGAGAATTGATTCTTATCTTATTTAA-GGTACGAACGTT-ATTTTAAAG
257 AA-C-TGAGACAGTTACGAGAATCGATGCTTGTCTTATTTAATGG-ATGAACTTTGA-TTTAAAG
* * *
2358509 GAAAATAGGCGAAGAAAAGA-TTCTCATGCAAAAGAAAACCATCAATATCATTTATCCTAAAGAG
318 GAAAATAGGCAAAGAAAAGATTTC-CATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAG
** ** * *
2358573 TTGAATGTGTTTATAAAGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCAAGTTTGTC
382 GAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTC
* * * **
2358638 TCCTTCGAGGCATGAACTTAGACAGTACAA
447 TCTTTTGAGGCACGAACTTAGACTTTAC-A
* * *
2358668 AAAAATGGTAGGAAAAAAGCCTTTCTTGCAAAATGAAAGCATCAATATGATGTATCGTAATGAGA
1 AAAAATGGTAGGAAAAAAGCCTTTCTTGCGAAACGAAAGCATCAATATGATGTATCGTAAAGAGA
* * * * *
2358733 AGACAATGTTTATGGTGCCTTATCCTGAAAAATAATGAGGATTAGTAT-AGGCACTCATGTTTGT
66 AGACTATGTTTATGGTGCCTTATCCTG-AAAAGAATGGGGATTAGTATGA-GTATTCATGTTTGT
* * * *
2358797 CTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTGAAAGAAAAAGTTTTTCTTGCAACAT
129 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACAT
* * * * *
2358862 GAAAGCATCAATGTCATGTATCTTAATAAAGAGAAAGTGTTTTGGCTTCACAATCTTGAGAAA-A
194 CAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCACAATCTTGA-AAAGA
* * * * * *
2358926 ACTGAGACAATTATGAGAATCGATTCTTATCTCATTT--T-GA--ACACTAT--TTTAAAGGAAA
258 ACTGAGACAGTTACGAGAATCGATGCTTGTCTTATTTAATGGATGA-ACTTTGATTTAAAGGAAA
* * *
2358984 ATAGGCAAAGAAAAGATTCCCAAGCAAAAGAAAAACATCAATATCATTTATCCT-ATGAGGAGAA
322 ATAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
*
2359048 TGTTTTTATAGTGCCTAATC-CTAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCTT
387 TGTGTTTATAGTGCCTAATCAC-AAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCTT
* * * *
2359112 TTGATGCCCGAACTTAGTCTTTATA
451 TTGAGGCACGAACTTAGACTTTACA
* * * **
2359137 AAAAATGGTGGGAAAAAAGCCTTTCTTGCGAAACGAAAGCATCAACATGATGTATCCTAATTAGA
1 AAAAATGGTAGGAAAAAAGCCTTTCTTGCGAAACGAAAGCATCAATATGATGTATCGTAAAGAGA
* * * * *
2359202 AGACTAGGTTTATGGTG-CTTAATCCGGAAAAGAATGGGGATTAGTATGAGTTTTCAAGTTTGCC
66 AGACTATGTTTATGGTGCCTT-ATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTC
* * * *
2359266 TTATTTAAGACACAAACTTTGATTCTATTAAAAACGGTGGAAGGAAAAGTTTTTCTTGCAACATA
130 TTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACATC
* * *
2359331 AAAGCATCAATGTCATGTATCCTAATG-GGAGGAATTTGTTTTGGCTTCACAATCTTGAAAAGAG
195 AAAGCATCAATGTCATGTATCCTAATGAAG-GGAATGTGTTTTGGCTTCACAATCTTGAAAAGAA
* ** * * * *
2359395 TTGAGGTAGTTTCGAGAATTGATGCTTGTCTTATTT-ATGGGATGAACTTTGAATTATAGGAAAA
259 CTGAGACAGTTACGAGAATCGATGCTTGTCTTATTTAAT-GGATGAACTTTGATTTAAAGGAAAA
* *
2359459 TAGGGCAAAGAAAAGATTTCCTTGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAT
323 TA-GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
* *
2359524 TGTGTTTATAGTGCCTAATCAAAAAATGAAGGAAGATCATTACTAGAATCCATGTTTGTCTCTTT
387 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCTTT
* *
2359589 TGAAGCATGAACTTAGACTTTACA
452 TGAGGCACGAACTTAGACTTTACA
* * * *
2359613 TAAAATGGT-GAGAAAAAAGCCTTTCTTGCGAAACAAAAGCATCAATATGATTTATCGTAATGAG
1 AAAAATGGTAG-GAAAAAAGCCTTTCTTGCGAAACGAAAGCATCAATATGATGTATCGTAAAGAG
* * * * * *
2359677 AAAACAATGCTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATAAGTATTCATGTTTATC
65 AAGACTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTC
* * *
2359742 TTATTTAAGACACAAACTTTGATTCCATGAAAAACGGTGGAAGGAAAAGTTTTTCTTGC-AGCAT
130 TTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGA-CAT
* * * * * * * *
2359806 CAAAGCATTAGTGTCATGTGTCCTAGTGAATGGAATTTGTTCT-GCTTCATAATCTT-AAAGAGA
194 CAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCACAATCTTGAAA-AGA
** * * *
2359869 GTTGAGACAGTTACGAGAATTGATGCTTGTCTTATTT-ATGGGTTGAACTTTGATTTTAAGGAAA
258 ACTGAGACAGTTACGAGAATCGATGCTTGTCTTATTTAAT-GGATGAACTTTGATTTAAAGGAAA
* * *
2359933 ATAAGGCAAAGAAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTACCCTAATAAGGAGA
322 AT-AGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA
* ** * * * *
2359998 ATGTGTTTAGAGTGGATAATCACAAAATCAATGAAGATCATTTCTAGAATCCAAGTTTGTCTCAT
386 ATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCTT
2360063 TTGAGGCACGAACTTACG-CTTTACA
451 TTGAGGCACGAACTTA-GACTTTACA
** * * * *
2360088 AAATTTGGTGGGAAAAAAGCCTTTC-TGTGAAACGAAAGCTTCAATATGATGTATCGTAAAGTGA
1 AAAAATGGTAGGAAAAAAGCCTTTCTTGCGAAACGAAAGCATCAATATGATGTATCGTAAAGAGA
* * * *
2360152 AAACAATGTTTATGGTGCCTTATCCT-ACAAAGAATGGGGATTAGTCTGAGTATTCATGCTTGTC
66 AGACTATGTTTATGGTGCCTTATCCTGA-AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTC
*
2360216 TTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAGGAAAAGTTTTTCTTGCGACATC
130 TTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACATC
* *
2360281 AAAGTATCAATGTCATGTATCCTAATGAAGGGTATGTGTTTTGGCTTCACAATCTTGAAAAGAAC
195 AAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCACAATCTTGAAAAGAAC
* * * * ** * * * *
2360346 TAAGACACTTACAAGAATCGATTCTTACCTCA-TTAAAGGTACGAACATT-ATTTTAAAGGAAAA
260 TGAGACAGTTACGAGAATCGATGCTTGTCTTATTTAATGG-ATGAACTTTGA-TTTAAAGGAAAA
* * * * *
2360409 TAGGCAAAGAAAAGATTCCCATGTAGAAGAAAATCATCACTATCATTTATCCTAATGAGGAGATT
323 TAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
* * * *
2360474 GTTTTTATAGTGCCTAATC-CTAAAATGAATGATGATAATTACTAGAATCCATGTTTGTCTCTTC
388 GTGTTTATAGTGCCTAATCAC-AAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCTTT
* *
2360538 TAAGGC-CTGAACTTAGACTTTACC
452 TGAGGCAC-GAACTTAGACTTTACA
* * * *
2360562 AATAATGGT-GCAAAAAATGCATTTCTTGCGAAACGAAAGCATCAATATGATGTATCCTAAAGAG
1 AAAAATGGTAGGAAAAAA-GCCTTTCTTGCGAAACGAAAGCATCAATATGATGTATCGTAAAGAG
* * * * *
2360626 AAGACTATGTTTATAGTGCCTTAT-CTAAAAAAGAATAGGGATTAGTGTGCA-TATTCAAGTTTG
65 AAGACTATGTTTATGGTGCCTTATCCT-GAAAAGAATGGGGATTAGTATG-AGTATTCATGTTTG
* * *
2360689 CCTTATTTAAGAGATAAACTTTGATTCTATCAAAAATGGTGGAAGGAAAAGTTTTTCTTGCGACA
128 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACA
* * * * * * *
2360754 CCAAAGCATCAATTTTATGCATCCTAATGAAGGGAATGTGTTTTGGC-TC-CTAATCTCGTAATG
193 TCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCAC-AATCTTGAAAAG
** *
2360817 AA-TGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATATT-AAGGA
257 AACT-GAGACAGTTACGAGAATCGATGCTTGTCTTATTTAATGGATGAACTTTGAT-TTAAAGGA
* *** * *
2360880 AAATAGGGCTAAGAAAAGATTTTTGTGCAAAAAAAAATCATTAATATCATTTATCCTAATGAGGA
320 AAATA-GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGA
* * *
2360945 GAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAAATCATCACTAGAATCCACGTTTGTCTC
384 GAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTC
* *
2361010 TTTTGAGGCACAAACTTAGACTATACA
449 TTTTGAGGCACGAACTTAGACTTTACA
* * **
2361037 AAAAATGG-AGGGAAAAAAGCCTTTCTTACGAAACGAAAGCATCAATATGATGTATCCTATCGAG
1 AAAAATGGTA-GGAAAAAAGCCTTTCTTGCGAAACGAAAGCATCAATATGATGTATCGTAAAGAG
** *
2361101 AAGACTATAATTATGGTGCCTTAT-CTAGAAAAGAATTGGGATTAGTATGAGTATTCATGTTTGT
65 AAGACTATGTTTATGGTGCCTTATCCT-GAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGT
*
2361165 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGGGACAT
129 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACAT
* * * * * *
2361230 CAAAGCACCAAAGTCTTGTATCCTAACGAAGGGAATGTGTTTTGGCTTTACATTCTTGAAAAGAA
194 CAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCACAATCTTGAAAAGAA
* * * * * *
2361295 CTGAGATAGTTATGAGAATCGATTCTTATCTCATTTAA-GGTACGAA-TATT-ACTTTAAAGGAA
259 CTGAGACAGTTACGAGAATCGATGCTTGTCTTATTTAATGG-ATGAACT-TTGA-TTTAAAGGAA
*
2361357 AATAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGA
321 AATAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA
* * * * * *
2361422 ATGTGTTTGTAATACCTAACCATAAAATGAATGAAGATCATTACTAGAATCCTTGTTTGTCTCTT
386 ATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCTT
* *
2361487 TTAAGGCACGAACTGAGACTTTACA
451 TTGAGGCACGAACTTAGACTTTACA
* * *
2361512 AAAAATGGTAGGAAAAAAGCCTTTCTTGTGAAATGAATGCATCAATATGATGTATCGTAAAGAGA
1 AAAAATGGTAGGAAAAAAGCCTTTCTTGCGAAACGAAAGCATCAATATGATGTATCGTAAAGAGA
* * *
2361577 AGACTATGTTTATGGTGCCTTATCCTGAAATGAATGAGGATTAGTATAAGTATTCATGTTTGTCT
66 AGACTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCT
* * * * *
2361642 TGTTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGAAAGCAAAAGTTTTTCTTGGGAC-CCT
131 TATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACATC-
* *
2361706 AAAGCATCAATTTCATATATCCTAATGAAGGGAATGTGTTTTGGCTTCACAATCTTGAAAAGAAC
195 AAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCACAATCTTGAAAAGAAC
* * * * *
2361771 TAAAACAGTTACGAGAATCGATTCTTGTCTTATTTAA-GGTATGAAC-ATCATTCTAAA-GAAAG
260 TGAGACAGTTACGAGAATCGATGCTTGTCTTATTTAATGG-ATGAACTTTGATT-TAAAGGAAA-
* *
2361833 ATAGGAAAAGAAAAGA-TTCCAATGCAAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAG
322 ATAGGCAAAGAAAAGATTTCC-ATGC-AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAG
* * * * * *
2361897 AATATGTTTATAGTGCCTAATCGCAAAATGAATGAAGATCATTGCTGGAATCCAAGTTTGTCTCA
385 AATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCT
* * *
2361962 TTTGAAGCATGAACTTAGACTTTCCA
450 TTTGAGGCACGAACTTAGACTTTACA
* * * *
2361988 AAAAATGGTGGGAAAAAAGCCTTTCTTGCGAAACGAAAGCATCAATATAATGTATCCTGAAGAGA
1 AAAAATGGTAGGAAAAAAGCCTTTCTTGCGAAACGAAAGCATCAATATGATGTATCGTAAAGAGA
* *
2362053 AGACTATGTTTATGGTGCCTTATCCTGAAAATAATGGGGATTAGTAAGAGTATTCATGTTTGTCT
66 AGACTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCT
* * ** * * *
2362118 TATTTAAGAGACAAACTTTGATTCGATAAAAAATAGTAGAAGGAAAAAGTTTATCTTGCAACATC
131 TATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGG-AAAAGTTTTTCTTGCGACATC
* * * *
2362183 AAAGCATCTATGCCATGTATCCTTATGAAGGGAATGTGTCTTTGG-TTCGCAATCTTGAAAA-AA
195 AAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGT-TTTGGCTTCACAATCTTGAAAAGAA
* * * * * * *
2362246 ATGGAGACCGTTACGAGAATAGATGCCTGTCTTATTT-ATGGGTTGAAATTTGATTTGAAGGAAA
259 CT-GAGACAGTTACGAGAATCGATGCTTGTCTTATTTAAT-GGATGAACTTTGATTTAAAGGAAA
2362310 ATAGGGCAAAGAAAAGATT
322 ATA-GGCAAAGAAAAGATT
2362329 ATAGTGCCTA
Statistics
Matches: 4789, Mismatches: 647, Indels: 287
0.84 0.11 0.05
Matches are distributed among these distances:
461 38 0.01
462 81 0.02
463 1 0.00
465 2 0.00
467 4 0.00
468 168 0.04
469 85 0.02
470 79 0.02
471 60 0.01
472 8 0.00
473 176 0.04
474 469 0.10
475 1398 0.29
476 1252 0.26
477 267 0.06
478 165 0.03
479 135 0.03
480 5 0.00
482 1 0.00
484 3 0.00
486 81 0.02
487 13 0.00
488 3 0.00
490 1 0.00
494 2 0.00
496 1 0.00
497 44 0.01
498 147 0.03
499 65 0.01
500 35 0.01
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (475 bp):
AAAAATGGTAGGAAAAAAGCCTTTCTTGCGAAACGAAAGCATCAATATGATGTATCGTAAAGAGA
AGACTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCT
TATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACATCA
AAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCACAATCTTGAAAAGAACT
GAGACAGTTACGAGAATCGATGCTTGTCTTATTTAATGGATGAACTTTGATTTAAAGGAAAATAG
GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG
TTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCTTTTGAG
GCACGAACTTAGACTTTACA
Found at i:2363220 original size:476 final size:475
Alignment explanation
Indices: 2362327--2366068 Score: 4525
Period size: 476 Copynumber: 7.9 Consensus size: 475
2362317 AAAGAAAAGA
* * * * * * *
2362327 TTATAGTGCCTAATCGCAAAAAGAATGAAGATCATTGCAAAAATCCAAGTTTGTCTCATTTGAAG
1 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACGTTTGTCTCATTTGAGG
* ** * *
2362392 CACGAACTTAGACTTTACAAAAAATGGTGGGAAAAATGCGTTTCTTGTGAAATGAAAGAATCAAT
66 CACGAACTTAGACTTTACAAAAAATGGTGGGAAAAA-GCCTTTCTTGCAAAACGAAAGCATCAAT
* *
2362457 ATGATGTATCCTAAAGAGAAGAC-TTGTTTATGGTGCCTTATCCT-AAAATGAATGGGGATTAGT
130 ACGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTTATCCTGAAAA-GAATGGGGATTAGT
* *
2362520 ATGAGTATTCATGTTTATCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTGGAA--AA
194 ATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAA
** * * * * * * * *
2362583 ATTTTTTTTGTTACAACCCCAAAATATCAATTTCATCTATCCTAATAAAAGGAATTTGTTTTGGC
259 A-AGTTTTTCTTGCGACACCAAAACATCAATTTCATGTATCCTAATAAAGGGAATGTGTTTTGGC
*
2362648 TTCACAATCTTGAAAAGAACTGAGACAGTTACGAGAATCGATGCCTGTCTTATATAGGGGATGAA
323 TTCACAATCTTGAAAAGAACTGAGACAGTTACGAGAATCGATGCCTGTCTTATATAAGGGATGAA
* * *
2362713 TTTTGATTTAAAGGAAAACAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCAT
388 CTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCAT
* * *
2362778 TTATCCTAATAAGGGGAATGCAT
453 TTATCCTAATGAGGAGAATGCGT
* * * *
2362801 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTATAATTCATGTTTGTCTCGTTTGAGG
1 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACGTTTGTCTCATTTGAGG
* *
2362866 CACGAACTTAGACTTTA-AAAAATTTGGTTGGGAAAAAGCCTTTCTTGCAAAATGAAAGCATCAA
66 CACGAACTTAGACTTTACAAAAA-ATGG-TGGGAAAAAGCCTTTCTTGCAAAACGAAAGCATCAA
* * * * *
2362930 TACGAT-AAGTCTTAAAGAGAAGACAATGATTATGTTGCCTTATCCTAAAAAGAATGGGGATTAG
129 TACGATGTA-TCCTAAAGAGAAGACAATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAG
* * * * *
2362994 TATGACTATTCAGGTTTGTCTTATTCATA-AGACAAACTTTGATTCTATCAAATATGGTGGAAGG
193 TATGAGTATTCATGTTTGTCTTATTTA-AGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGG
* * * * * *
2363058 AAAAGTTTTTCTTGTGATATCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGG
257 AAAAGTTTTTCTTGCGACACCAAAACATCAATTTCATGTATCCTAATAAAGGGAATGTGTTTTGG
* *
2363123 CTTCACAATCTTGAAAGGAACTGAGATAGTTACGAGAATCGATG-CTCGTCTTATATAAGGGATG
322 CTTCACAATCTTGAAAAGAACTGAGACAGTTACGAGAATCGATGCCT-GTCTTATATAAGGGATG
* * *
2363187 AACTTTGATTTAAAGGAAAATAGGGCCAAGAAAAGATTTCCACGCAAAAGAAAATCATCAATAGC
386 AACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
** *
2363252 ATTTATCCTAATGAAAAGAATGCGC
451 ATTTATCCTAATGAGGAGAATGCGT
* * * * * * * * *
2363277 TTATAGTGCTTAATAAAAAAATAAATTAAGATTATTACTAGAATCCACGTTTGTCTCTTTTAAAG
1 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACGTTTGTCTCATTTGAGG
* * * * *
2363342 CATGTACTTAGACTTTACAAAAAATGGCGAGAAAAAAGCCTTTCTTACAAAACGAAAGCATCAAT
66 CACGAACTTAGACTTTACAAAAAATGGTG-GGAAAAAGCCTTTCTTGCAAAACGAAAGCATCAAT
* * * *
2363407 ACGATATATCCTAAAGAGAAGACAAAGTTTATGATGCCTTATCCTGAAAAGAATGGGTATTAGTA
130 ACGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTA
* * * *
2363472 TGAGTATTTATGTTTATCTTATTAAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAA
195 TGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAA
* * * * *
2363537 AGTTTTTCTTACAACCCCAAAATATCAATTTCATGTATCCTAATAAAAGGAATGTGTTTTGGCTT
260 AGTTTTTCTTGCGACACCAAAACATCAATTTCATGTATCCTAATAAAGGGAATGTGTTTTGGCTT
* * * *
2363602 CACAATCTTGAAAAGAACTGAGACAATTACGAGAATTGATGTCTGTCTTATACAAGGGATGAACT
325 CACAATCTTGAAAAGAACTGAGACAGTTACGAGAATCGATGCCTGTCTTATATAAGGGATGAACT
* *
2363667 TTGATTTAAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCGTCAATATCATTT
390 TTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTT
*
2363732 ATCCTAATGAAGAGAATGCGT
455 ATCCTAATGAGGAGAATGCGT
* * * *
2363753 TTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTATAATTCATGTTTGTCTCATTTGAGG
1 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACGTTTGTCTCATTTGAGG
*
2363818 CACGAACTTAGACTTTA-AAAAATTTGGTGGGAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAA
66 CACGAACTTAGACTTTACAAAAA-ATGGTGGG-AAAAAGCCTTTCTTGCAAAACGAAAGCATCAA
* *
2363882 TACGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTAAT-CTGGAAAAGAATGGGGTTTAG
129 TACGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTTATCCT-GAAAAGAATGGGGATTAG
* * * *
2363946 GATGAGTATTCATGCTTATCTTATTTAAGAGA-AGGACTTTGATTCTATCAAAAACGGTGGACA-
193 TATGAGTATTCATGTTTGTCTTATTTAAGAGACA-AACTTTGATTCTATCAAAAACGGTGGA-AG
* *
2364009 GAAAAGTTTTTCTTGCGAC-CCTAAAACATCAATTTCATGTATCCTAATAAAGGGAAGGGGTTTT
256 GAAAAGTTTTTCTTGCGACACC-AAAACATCAATTTCATGTATCCTAATAAAGGGAATGTGTTTT
* *
2364073 GGCTTCACAATCTTGAAAAGAACTGAGACAATTACGAGAATCGATGCTTGTCTTATATAAGGGAT
320 GGCTTCACAATCTTGAAAAGAACTGAGACAGTTACGAGAATCGATGCCTGTCTTATATAAGGGAT
* ** * *
2364138 AAACACTGATTTAAAGGAAAATAGGGCAAAGAAAATATTTCCGTGCAAAAGAAAATCATCAATAT
385 GAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATAT
*
2364203 CATTTA-CTCTAATGAGGAGAATACGT
450 CATTTATC-CTAATGAGGAGAATGCGT
* *
2364229 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGA
1 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACGTTTGTCTCATTTGAGG
* ** *
2364294 CATGAACTTAGACTTTACAAAAAATGGTGGGAAAAATGAATTTCTTGCGAAACGAAAGCATCAAT
66 CACGAACTTAGACTTTACAAAAAATGGTGGGAAAAA-GCCTTTCTTGCAAAACGAAAGCATCAAT
* * *
2364359 ATGATGTATCCTAAAGAGAAGACTATGTTTATGGTTCCTTAT-CTAGAAAAGAATGGGGATTAGT
130 ACGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTTATCCT-GAAAAGAATGGGGATTAGT
* * * * *
2364423 GTGCA-TATTCATTTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGATAGAAAGA
194 ATG-AGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGA
* *
2364487 AAAGTTTTTCTTGCGACCCCAAAACATCAATTTCATGTATCTTAATAAAGGGAATGTGTTTTGGC
258 AAAGTTTTTCTTGCGACACCAAAACATCAATTTCATGTATCCTAATAAAGGGAATGTGTTTTGGC
*
2364552 TTCACAATCTTGAAAAGAACTGAGACAATTAC-AGGAATCGATGCCTGTCTTATATAAGGGATGA
323 TTCACAATCTTGAAAAGAACTGAGACAGTTACGA-GAATCGATGCCTGTCTTATATAAGGGATGA
* * * **
2364616 ACTTTGATTTAAAAGAAAATAGGGCAAAGAAAAGATTTCCATGTAAAAGAAAATCATCAGTATTG
387 ACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCA
*
2364681 TTTATCCTAATGAGCAGAATGCGT
452 TTTATCCTAATGAGGAGAATGCGT
* **
2364705 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACGTTTGTCTTATTTGTTG
1 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACGTTTGTCTCATTTGAGG
** **
2364770 CACGAACTTAGAC--T--------TGGTGGGAAAAAAGCCTTTCTTGCAAAATAAAAATATCAAT
66 CACGAACTTAGACTTTACAAAAAATGGTGGG-AAAAAGCCTTTCTTGCAAAACGAAAGCATCAAT
* * * * * * * *
2364825 ACAATGTATCCTAAAGAGAAGGCAATTTTTATGTTGGCTTATCCCGAAAAGAATGTGGATTTGTA
130 ACGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTA
* * ** * *
2364890 TGAGAATTCTTGTTTGTCAAATTTAAGAGACAAACTTTGATTATATCAAAAACGTTGGAAGGAAA
195 TGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAA
* * * * * ** *
2364955 AGTTTTTCTTACGACAACAAAGCATCAAATTAATGTATCCTAAGGAAGGGAATGTGATTTGGC-T
260 AGTTTTTCTTGCGACACCAAAACATCAATTTCATGTATCCTAATAAAGGGAATGTGTTTTGGCTT
* * * ** *
2365019 C-CGATTCTTGTAAAGAA-TGGAGATTA-TTGTGAGAATCGATGCCTGTCTTATTTAAGGGATGA
325 CAC-AATCTTGAAAAGAACT-GAGA-CAGTTACGAGAATCGATGCCTGTCTTATATAAGGGATGA
* * * *
2365081 ACTTTGATTTAAAGGAAAATAGGGTAAAGAAAATATTTCCATGCAAAAGAAAATCATCAGTATTA
387 ACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCA
* * *
2365146 TTTATCCTGAGGAGGAGAATGTGT
452 TTTATCCTAATGAGGAGAATGCGT
*
2365170 TCATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACGTTTGTCTCATTTGAGG
1 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACGTTTGTCTCATTTGAGG
* * * * * * * * *
2365235 TACGAACCTAGACTTTA-AAAAATTTGGCAGGAAAAAAGCTTTTCTTGCGAAATGAAAGAATCAA
66 CACGAACTTAGACTTTACAAAAA-ATGG-TGGGAAAAAGCCTTTCTTGCAAAACGAAAGCATCAA
* * * * * *
2365299 TACAATGTATCCTAAAGAGAAGACTATGTTTATAGTGCCTAATTCGGAAAAGAATGGGGATTAGT
129 TACGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGT
* * *
2365364 ATGAGTATTCATGTTTGTCTTATTTAATAGATAAACTTTGATTCTATCAAAAATGGTGGAAGGAA
194 ATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAA
* * * ** * *
2365429 AAGTTTTTCTTACGACAACAAAGCATCAATTTCATGTATCCTAAGGAAGGGAATATGTTTTGAC-
259 AAGTTTTTCTTGCGACACCAAAACATCAATTTCATGTATCCTAATAAAGGGAATGTGTTTTGGCT
** * * * ** ** * * *
2365493 TCTTATTCTCGTAAAGAA-TGGAGATTGTTGTGAGAATCGATGCCTTTCTTATTTAAAGGATGAA
324 TCACAATCTTGAAAAGAACT-GAGACAGTTACGAGAATCGATGCCTGTCTTATATAAGGGATGAA
* * *
2365557 CTTTCATTTAATGGAAAGTAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCAT
388 CTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCAT
* **
2365622 TTATCCTAATGAGCAGAATATGT
453 TTATCCTAATGAGGAGAATGCGT
* * * * * ** * *
2365645 TTATAGTGCCTTATCACAAAATGAATAAAGATCATTACTACAAACAATATTTGTC-CTTTTTGAA
1 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACGTTTGTCTC-ATTTGAG
* * * * * ** *
2365709 GCATGAACTTAGACTTTATAAAAAATGGTAGGAAAAAAGCTTTTCTCGTGAAACGAAAGCATTAA
65 GCACGAACTTAGACTTTACAAAAAATGGT-GGGAAAAAGCCTTTCTTGCAAAACGAAAGCATCAA
* * * * * * * *
2365774 TATGATGTATCCTAATGAGAAGATAATGATTATGGTGACTAAT-TTGGAAAAGGATGGGGATTAG
129 TACGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTTATCCT-GAAAAGAATGGGGATTAG
* * *
2365838 TATGAGTATTCATGTTTCTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAAGGA
193 TATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGA
* * * * *
2365903 AATGTTTTTCTTGTC-ACCCCAAAGCATTAATTTCATGTATCCTAATAAAGGGAATATGTTTTGG
258 AAAGTTTTTCTTG-CGACACCAAAACATCAATTTCATGTATCCTAATAAAGGGAATGTGTTTTGG
* * * * * * * *
2365967 TTTCACAATCTGGAAAAGAACAGAGACAGGTACGAGAATCAATGCTTCTCTTATTTAAGGGATGA
322 CTTCACAATCTTGAAAAGAACTGAGACAGTTACGAGAATCGATGCCTGTCTTATATAAGGGATGA
*
2366032 ACTTTGACTTAAAGGAAAATAGGGCAAAGAAAAGATT
387 ACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATT
2366069 ATACTACCTA
Statistics
Matches: 2831, Mismatches: 381, Indels: 110
0.85 0.11 0.03
Matches are distributed among these distances:
464 2 0.00
465 202 0.07
466 188 0.07
467 7 0.00
473 6 0.00
474 121 0.04
475 713 0.25
476 1570 0.55
477 22 0.01
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.31
Consensus pattern (475 bp):
TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACGTTTGTCTCATTTGAGG
CACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAGCCTTTCTTGCAAAACGAAAGCATCAATA
CGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTAT
GAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAA
GTTTTTCTTGCGACACCAAAACATCAATTTCATGTATCCTAATAAAGGGAATGTGTTTTGGCTTC
ACAATCTTGAAAAGAACTGAGACAGTTACGAGAATCGATGCCTGTCTTATATAAGGGATGAACTT
TGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTA
TCCTAATGAGGAGAATGCGT
Found at i:2366442 original size:420 final size:421
Alignment explanation
Indices: 2365703--2366484 Score: 1088
Period size: 420 Copynumber: 1.9 Consensus size: 421
2365693 ATTTGTCCTT
* * *
2365703 TTTGAAGCATGAACTTAGACTTTATAAAAAATGGTAGGAAAAAAGCTTTTCTCGTGAAACGAAAG
1 TTTGAAGCACGAACTTAGACTTTACAAAAAATGGTAGGAAAAAAGCTTTTCTCGCGAAACGAAAG
* * * ** * *
2365768 CATTAATATGATGTATCCTAATGAGAAGATAATGATTATGGTGACTAATTTGGAAAAGGATGGGG
66 CATCAATATGATGTATCCTAAAGAGAAGACAATGATTATGGTGACTAATCCGAAAAAGAATGGGG
*
2365833 ATTAGTATGAGTATTCATGTTTCTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGG
131 ATTAGTATGAGTATTCAGGTTTCT-ATATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGG
* * * * *
2365898 AAGGAAATGTTTTTCTTGTCACCCCAAAGCATTAATTTCATGTATCCTAATAAAGGGAATATGTT
195 AAGGAAAAGTTTTTCTTGTCACACCAAAGCATCAATGTCATGTATCCTAATAAAGAGAATATGTT
* *
2365963 TTGGTTTCACAATCTGGAAAAGAACAGAGACAGGTACGAGAATCAATGCTTCTCTTATTTAAGGG
260 TTGGCTTCACAATCTAGAAAAGAACAGAGACAGGTACGAGAATCAATGCTTCTCTTATTTAAGGG
* * *
2366028 ATGAACTTTGACTT-AAAGGAAAATAGGGCAAAGAAAAGATTATACTACCTAATCGCAAAATGAA
325 ATAAACATTGACTTAAAAGGAAAATA-GACAAAGAAAAGATTATACTACCTAATCGCAAAATGAA
2366092 TAAAGATCTTTGGTAGAATCCAAGTTTGTCTCA
389 TAAAGATCTTTGGTAGAATCCAAGTTTGTCTCA
* * * *
2366125 TTTGAAGCACGAATTTAGACTTTACAAAAAATGGTGGGAAAAATG-TGTTTCTTGCGAAACGAAA
1 TTTGAAGCACGAACTTAGACTTTACAAAAAATGGTAGGAAAAAAGCT-TTTCTCGCGAAACGAAA
* * * *
2366189 GCATCAATGTGATGTCTCCTAAAGAGAAGACAATGTTTATGGTGCCTAATCCGAAAAAGAATGGG
65 GCATCAATATGATGTATCCTAAAGAGAAGACAATGATTATGGTGACTAATCCGAAAAAGAATGGG
* * *
2366254 GATTGGTATGAGTATTCAGGTTTCT-TATTTAGGAGACAAACTTTGATTCTATCAAAAACGGTGG
130 GATTAGTATGAGTATTCAGGTTTCTATATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGG
* * * *
2366318 AAGGAAAAGTTTTTCTTG-CAACATCAAAGCATCAATGTCATGTATCCTACTGAAGAGAATTTGT
195 AAGGAAAAGTTTTTCTTGTC-ACACCAAAGCATCAATGTCATGTATCCTAATAAAGAGAATATGT
* * * * *
2366382 TTTGGCTTCACAATCTAGAAAA-ATACTGAGACAGTTACGAGAATCGATTCTTGTCTTATTTAAG
259 TTTGGCTTCACAATCTAGAAAAGA-ACAGAGACAGGTACGAGAATCAATGCTTCTCTTATTTAAG
* **
2366446 GTATAAACATTGTTTTAAAAGGAAAATAGACAAAGAAAA
323 GGATAAACATTGACTTAAAAGGAAAATAGACAAAGAAAA
2366485 AATTCCCATG
Statistics
Matches: 312, Mismatches: 44, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
419 2 0.01
420 166 0.53
421 12 0.04
422 132 0.42
ACGTcount: A:0.37, C:0.13, G:0.20, T:0.30
Consensus pattern (421 bp):
TTTGAAGCACGAACTTAGACTTTACAAAAAATGGTAGGAAAAAAGCTTTTCTCGCGAAACGAAAG
CATCAATATGATGTATCCTAAAGAGAAGACAATGATTATGGTGACTAATCCGAAAAAGAATGGGG
ATTAGTATGAGTATTCAGGTTTCTATATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGA
AGGAAAAGTTTTTCTTGTCACACCAAAGCATCAATGTCATGTATCCTAATAAAGAGAATATGTTT
TGGCTTCACAATCTAGAAAAGAACAGAGACAGGTACGAGAATCAATGCTTCTCTTATTTAAGGGA
TAAACATTGACTTAAAAGGAAAATAGACAAAGAAAAGATTATACTACCTAATCGCAAAATGAATA
AAGATCTTTGGTAGAATCCAAGTTTGTCTCA
Found at i:2367102 original size:473 final size:468
Alignment explanation
Indices: 2366075--2368374 Score: 2747
Period size: 473 Copynumber: 4.9 Consensus size: 468
2366065 GATTATACTA
* * * ** *
2366075 CCTAATCGCAAAATGAATAAAGATCTTTGGTAGAATCCAAGTTTGTCTCATTTGAAGCACGAATT
1 CCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAAGCACGAACT
* * * *
2366140 TAGACTTTACAAAAAATGGTGGGAAAAATGTGTTTCTTGCGAAACGAAAGCATCAATGTGATGTC
66 TAGACTTTACAAAAAATGGTGGGAAAAATGCGTTTCTTGCAAAACGAAAGCATCAATATGATGTA
* * *
2366205 TCCTAAAGAGAAGACAATGTTTATGGTGCCTAATCCGAAAAAGAATGGGGATTGGTATGAGTATT
131 TCCTAATGAGAAGACAATGTTTATGGTGCCTAATCAG-AAAAGAATGGGGATTAGTATGAGTATT
* * *
2366270 CA-GGTT-TCTTATTTAGGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTC
195 CATGTTTGTCTCATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGG-AAAGTTTTTC
* * * * * * *
2366333 TTGCAACATCAAAGCATCAATGTCATGTATCCTACTGAAGAGAATTTGTTTTGGCTTCACAATCT
259 TTGCGACACCAAAGCATCAATTTCATGTATCCTA-AGAAGGGAATGTGTTTTGGCTTCACATTCT
* * * * * * *
2366398 AGAAAAATACTGAGACAGTTACGAGAATCGATTCTTGTCTTATTTAAGGTATAAACATTGTTTTA
323 CG-AAAAGACTG-GACAGTTACGAGAATCGATACTTGTCTTATTTAAGGAATGAACTTTGATTT-
** * *
2366463 AAAGGAAAATAGACAAAGAAAAAATTCCCATGCAAAAGAGAATCATCAAT-TCATTTATCCTAAT
385 AAAGGAAAATAG-GGAA-AAAAAATTCTCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
**
2366527 GAGGCGAATATGTTTATAGTG
448 GAGATGAATATGTTTATAGTG
*
2366548 CCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCAATTG-AGACACGAAC
1 CCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAAG-CACGAAC
* *
2366612 TTAGACTTTACAAAAAATGGTGGGAAAAATGCATTTCTTGCAAAACGAAAGCATCAATATGACGT
65 TTAGACTTTACAAAAAATGGTGGGAAAAATGCGTTTCTTGCAAAACGAAAGCATCAATATGATGT
* *
2366677 ATCGTAATGAGAAGACAATGTTTATGGTGCCTAATCAGGAAAAGAATGAGGATTAGTATGAGTAT
130 ATCCTAATGAGAAGACAATGTTTATGGTGCCTAATCA-GAAAAGAATGGGGATTAGTATGAGTAT
* *
2366742 TAATGTTTGTCTCATTTAAGAGACAAACTTTGATTCTATCAAACACGGTGGAAGGATAAGTTTTT
194 TCATGTTTGTCTCATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGA-AAGTTTTT
* * **
2366807 CTTGCGACACCAAAGCATCAATTTCATGTATCTTAAGCAAGGGAATGTTTTTTGGCTT-TGATTC
258 CTTGCGACACCAAAGCATCAATTTCATGTATCCTAAG-AAGGGAATGTGTTTTGGCTTCACATTC
* ** *
2366871 TCGTAAAGTTTGGATATTGTTACGAGAATCGATACTTGTCTTATTTAAGGAATGAACTTTGATTT
322 TCGAAAAGACTGGACA--GTTACGAGAATCGATACTTGTCTTATTTAAGGAATGAACTTTGATTT
* * *
2366936 AAAGGAAAATAGGGTAAAAAAATTCTCAAGCAAAAGAAAATCATCAGTATCATTTATCCTAATGA
385 AAAGGAAAATAGGGAAAAAAAATTCTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA
* **
2367001 GGTGAATGCGTTTATAGTG
450 GATGAATATGTTTATAGTG
* * * * *
2367020 CCTAATCACAAAATAAATGAAGATCATTACTAAAATCCATGTTTGTCTCTTTTGAAGCATGAACT
1 CCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAAGCACGAACT
** * * *
2367085 TAGACTTTACAAAAAAATGGTAAGAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATGTTGT
66 TAGACTTTAC-AAAAAATGGTGGGAAAAATGCGTTTCTTGCAAAACGAAAGCATCAATATGATGT
* * * *
2367150 ATCATAATGAGGAGACAATGTTTATGGTGCCTAATCCAGAAAAAAATGGGGATTAGTGTGAGTAT
130 ATCCTAATGAGAAGACAATGTTTATGGTGCCTAAT-CAGAAAAGAATGGGGATTAGTATGAGTAT
*
2367215 TCATGTTTGTCTCATTTAAGAGACAAACTTTGATTCTATCAAACACGGT-GAAGGAATAGTTTTT
194 TCATGTTTGTCTCATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAA-AGTTTTT
* *
2367279 CTTGTGACACCAAAGCATCAATTTCATGTATCCTAAGGAAGGGAATGTGTTTTGGCTTC-GATTC
258 CTTGCGACACCAAAGCATCAATTTCATGTATCCTAA-GAAGGGAATGTGTTTTGGCTTCACATTC
* * * * * *
2367343 TCGTAAAGATTGGAGATTATAACGAGAATCGATACTTGTTTTATTTAA-AAGATGAACTTTGATT
322 TCGAAAAGACTGGACAGT-T-ACGAGAATCGATACTTGTCTTATTTAAGGA-ATGAACTTTGATT
* * * * *
2367407 TAAAGGAAAATAACGCAAAGAAAAGATTCTCACGCAAAATAAAATCATCATTATCATTTATCCTA
384 TAAAGGAAAAT-AGGGAAA-AAAA-ATTCTCATGCAAAAGAAAATCATCAATATCATTTATCCTA
* *
2367472 ATGACATGAATGTGTTTATAGTG
446 ATGAGATGAATATGTTTATAGTG
2367495 CCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTG-AGACACG-A-
1 CCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAAG-CACGAAC
* * * **
2367557 -T-GACTTTGCAAAAAATGGTGGGAGAAATGCGTTTCTTGCGAAACGAAAGCATCGTTATGATGT
65 TTAGACTTTACAAAAAATGGTGGGAAAAATGCGTTTCTTGCAAAACGAAAGCATCAATATGATGT
* * * *
2367620 ATCCTAAGGACAAGACTATGTTTATGGTGCCTTATCTAGAAAAGAATGGGGATTAGTATGAGTAT
130 ATCCTAATGAGAAGACAATGTTTATGGTGCCTAATC-AGAAAAGAATGGGGATTAGTATGAGTAT
* * * * * * *
2367685 TCATGTTTGTATTATTTCAATA-ACAAACTTTGATTCCATTAAAAACTGTGGAAAGAAAAGTTTT
194 TCATGTTTGTCTCATTT-AAGAGACAAACTTTGATTCTATCAAAAACGGTGG-AAGGAAAGTTTT
* * * * *
2367749 TCTTGTGACA--AAA-CATGAATTTCATGTATCCTAATAAAAGGAATGTGTTTTGGCTTCACAAT
257 TCTTGCGACACCAAAGCATCAATTTCATGTATCCTAA-GAAGGGAATGTGTTTTGGCTTCACATT
* * * * * *
2367811 CTTGAAAAGAACTGAGACAGTTATGAGAATCGATGCCTGTCTTATATAAGGGATGAACTTTGATT
321 CTCGAAAAG-ACTG-GACAGTTACGAGAATCGATACTTGTCTTATTTAAGGAATGAACTTTGATT
*
2367876 CAAAGGAAAATAGGGCAAAGAAAAGATT-TCCATGCAAAAGAAAATCATCAATATCATTTATCCT
384 TAAAGGAAAATAGGG-AAA-AAAA-ATTCT-CATGCAAAAGAAAATCATCAATATCATTTATCCT
* * *
2367940 AATGAGAAGATTATGTTTGTAGTG
445 AATGAGATGAATATGTTTATAGTG
* ** *
2367964 CCTAATCACAAAATGAATGAAGATCATTACTAGAAT-CAATATTTGTCTTTTTTGAAGCATGAAC
1 CCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAA-GTTTGTCTCATTTGAAGCACGAAC
* * *
2368028 TTAGACTTTACAAAAAATGGTGGGAAAAA-GCTTTTCTTGTGAAAA-AAAAGCATCAATATGATG
65 TTAGACTTTACAAAAAATGGTGGGAAAAATGCGTTTCTTG-CAAAACGAAAGCATCAATATGATG
* * * * *
2368091 TATCCTAATAAGAAGACAGTGATTGTGGTGCCTAAACCAGAAAAGAATGGGGATTAGTATGAGTA
129 TATCCTAATGAGAAGACAATGTTTATGGTGCCT-AATCAGAAAAGAATGGGGATTAGTATGAGTA
* *
2368156 TTCATGCTTCTCAT-ATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAATGTTT
193 TTCATGTTTGTC-TCATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAA-GTTT
* * * * *
2368220 TTCTTGCAACCCCAAAGCATCAATTTCATGTATCCCAATGAAAGGAATATGTTTTGGCTTCACAA
256 TTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAA-GAAGGGAATGTGTTTTGGCTTCAC-A
* * * * *
2368285 TT-TTGAAAAGAATAGAGACAGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTAA
319 TTCTCGAAAAGACT-G-GACAGTTACGAGAATCGATACTTGTCTTATTTAAGGAATGAACTTTGA
*
2368349 TTTAAAGGAAAATAGGGCAAAGAAAA
382 TTTAAAGGAAAATAGGG-AAAAAAAA
2368375 GATTATGGTG
Statistics
Matches: 1585, Mismatches: 194, Indels: 96
0.85 0.10 0.05
Matches are distributed among these distances:
468 46 0.03
469 170 0.11
470 146 0.09
471 71 0.04
472 374 0.24
473 381 0.24
474 70 0.04
475 325 0.21
476 2 0.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (468 bp):
CCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAAGCACGAACT
TAGACTTTACAAAAAATGGTGGGAAAAATGCGTTTCTTGCAAAACGAAAGCATCAATATGATGTA
TCCTAATGAGAAGACAATGTTTATGGTGCCTAATCAGAAAAGAATGGGGATTAGTATGAGTATTC
ATGTTTGTCTCATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAGTTTTTCTT
GCGACACCAAAGCATCAATTTCATGTATCCTAAGAAGGGAATGTGTTTTGGCTTCACATTCTCGA
AAAGACTGGACAGTTACGAGAATCGATACTTGTCTTATTTAAGGAATGAACTTTGATTTAAAGGA
AAATAGGGAAAAAAAATTCTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGATGAA
TATGTTTATAGTG
Found at i:2367348 original size:472 final size:470
Alignment explanation
Indices: 2366075--2368374 Score: 2785
Period size: 472 Copynumber: 4.9 Consensus size: 470
2366065 GATTATACTA
* * * ** *
2366075 CCTAATCGCAAAATGAATAAAGATCTTTGGTAGAATCCAAGTTTGTCTCATTTGAAGCACGAATT
1 CCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAAGCACGAACT
* * * *
2366140 TAGACTTTACAAAAAATGGTGGGAAAAATGTGTTTCTTGCGAAACGAAAGCATCAATGTGATGTC
66 TAGACTTTACAAAAAATGGTGGGAAAAATGCGTTTCTTGCAAAACGAAAGCATCAATATGATGTA
* *
2366205 TCCTAAAGAGAAGACAATGTTTATGGTGCCTAATCC-GAAAAAGAATGGGGATTGGTATGAGTAT
131 TCCTAATGAGAAGACAATGTTTATGGTGCCTAATCCAG-AAAAGAATGGGGATTAGTATGAGTAT
* * *
2366269 TCA-GGTT-TCTTATTTAGGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTT
195 TCATGTTTGTCTCATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTT
* * * * * * *
2366332 CTTGCAACATCAAAGCATCAATGTCATGTATCCTACTGAAGAGAATTTGTTTTGGCTTCACAATC
260 CTTGCGACACCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTC-CATTC
* * * * * * *
2366397 TAGAAAAATACTGAGACAGTTACGAGAATCGATTCTTGTCTTATTTAAGGTATAAACATTGTTTT
324 TCG-AAAAGACTG-GACAGTTACGAGAATCGATACTTGTCTTATTTAAGGAATGAACTTTGATTT
** * *
2366462 AAAAGGAAAATAGACAAAGAAAAAATTCCCATGCAAAAGAGAATCATCAAT-TCATTTATCCTAA
387 -AAAGGAAAATAG-GGAA-AAAAAATTCTCATGCAAAAGAAAATCATCAATATCATTTATCCTAA
**
2366526 TGAGGCGAATATGTTTATAGTG
449 TGAGATGAATATGTTTATAGTG
*
2366548 CCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCAATTG-AGACACGAAC
1 CCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAAG-CACGAAC
* *
2366612 TTAGACTTTACAAAAAATGGTGGGAAAAATGCATTTCTTGCAAAACGAAAGCATCAATATGACGT
65 TTAGACTTTACAAAAAATGGTGGGAAAAATGCGTTTCTTGCAAAACGAAAGCATCAATATGATGT
* *
2366677 ATCGTAATGAGAAGACAATGTTTATGGTGCCTAAT-CAGGAAAAGAATGAGGATTAGTATGAGTA
130 ATCCTAATGAGAAGACAATGTTTATGGTGCCTAATCCA-GAAAAGAATGGGGATTAGTATGAGTA
* * *
2366741 TTAATGTTTGTCTCATTTAAGAGACAAACTTTGATTCTATCAAACACGGTGGAAGGATAAGTTTT
194 TTCATGTTTGTCTCATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTT
* * **
2366806 TCTTGCGACACCAAAGCATCAATTTCATGTATCTTAA-GCAAGGGAATGTTTTTTGGCTTTGATT
259 TCTTGCGACACCAAAGCATCAATTTCATGTATCCTAATG-AAGGGAATGTGTTTTGGCTTCCATT
* ** *
2366870 CTCGTAAAGTTTGGATATTGTTACGAGAATCGATACTTGTCTTATTTAAGGAATGAACTTTGATT
323 CTCGAAAAGACTGGACA--GTTACGAGAATCGATACTTGTCTTATTTAAGGAATGAACTTTGATT
* * *
2366935 TAAAGGAAAATAGGGTAAAAAAATTCTCAAGCAAAAGAAAATCATCAGTATCATTTATCCTAATG
386 TAAAGGAAAATAGGGAAAAAAAATTCTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATG
* **
2367000 AGGTGAATGCGTTTATAGTG
451 AGATGAATATGTTTATAGTG
* * * * *
2367020 CCTAATCACAAAATAAATGAAGATCATTACTAAAATCCATGTTTGTCTCTTTTGAAGCATGAACT
1 CCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAAGCACGAACT
** * * *
2367085 TAGACTTTACAAAAAAATGGTAAGAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATGTTGT
66 TAGACTTTAC-AAAAAATGGTGGGAAAAATGCGTTTCTTGCAAAACGAAAGCATCAATATGATGT
* * * *
2367150 ATCATAATGAGGAGACAATGTTTATGGTGCCTAATCCAGAAAAAAATGGGGATTAGTGTGAGTAT
130 ATCCTAATGAGAAGACAATGTTTATGGTGCCTAATCCAGAAAAGAATGGGGATTAGTATGAGTAT
* *
2367215 TCATGTTTGTCTCATTTAAGAGACAAACTTTGATTCTATCAAACACGGT-GAAGGAATAGTTTTT
195 TCATGTTTGTCTCATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTT
* * *
2367279 CTTGTGACACCAAAGCATCAATTTCATGTATCCTAAGGAAGGGAATGTGTTTTGGCTTCGATTCT
260 CTTGCGACACCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCATTCT
* * * * * *
2367344 CGTAAAGATTGGAGATTATAACGAGAATCGATACTTGTTTTATTTAA-AAGATGAACTTTGATTT
325 CGAAAAGACTGGACAGT-T-ACGAGAATCGATACTTGTCTTATTTAAGGA-ATGAACTTTGATTT
* * * * *
2367408 AAAGGAAAATAACGCAAAGAAAAGATTCTCACGCAAAATAAAATCATCATTATCATTTATCCTAA
387 AAAGGAAAAT-AGGGAAA-AAAA-ATTCTCATGCAAAAGAAAATCATCAATATCATTTATCCTAA
* *
2367473 TGACATGAATGTGTTTATAGTG
449 TGAGATGAATATGTTTATAGTG
2367495 CCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTG-AGACACG-A-
1 CCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAAG-CACGAAC
* * * **
2367557 -T-GACTTTGCAAAAAATGGTGGGAGAAATGCGTTTCTTGCGAAACGAAAGCATCGTTATGATGT
65 TTAGACTTTACAAAAAATGGTGGGAAAAATGCGTTTCTTGCAAAACGAAAGCATCAATATGATGT
* * * * *
2367620 ATCCTAAGGACAAGACTATGTTTATGGTGCCTTATCTAGAAAAGAATGGGGATTAGTATGAGTAT
130 ATCCTAATGAGAAGACAATGTTTATGGTGCCTAATCCAGAAAAGAATGGGGATTAGTATGAGTAT
* * * * * * *
2367685 TCATGTTTGTATTATTTCAATA-ACAAACTTTGATTCCATTAAAAACTGTGGAAAGAAAAGTTTT
195 TCATGTTTGTCTCATTT-AAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTT
* * * * *
2367749 TCTTGTGACA--AAA-CATGAATTTCATGTATCCTAATAAAAGGAATGTGTTTTGGCTTCACAAT
259 TCTTGCGACACCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTC-CATT
* * * * * *
2367811 CTTGAAAAGAACTGAGACAGTTATGAGAATCGATGCCTGTCTTATATAAGGGATGAACTTTGATT
323 CTCGAAAAG-ACTG-GACAGTTACGAGAATCGATACTTGTCTTATTTAAGGAATGAACTTTGATT
*
2367876 CAAAGGAAAATAGGGCAAAGAAAAGATT-TCCATGCAAAAGAAAATCATCAATATCATTTATCCT
386 TAAAGGAAAATAGGG-AAA-AAAA-ATTCT-CATGCAAAAGAAAATCATCAATATCATTTATCCT
* * *
2367940 AATGAGAAGATTATGTTTGTAGTG
447 AATGAGATGAATATGTTTATAGTG
* ** *
2367964 CCTAATCACAAAATGAATGAAGATCATTACTAGAAT-CAATATTTGTCTTTTTTGAAGCATGAAC
1 CCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAA-GTTTGTCTCATTTGAAGCACGAAC
* * *
2368028 TTAGACTTTACAAAAAATGGTGGGAAAAA-GCTTTTCTTGTGAAAA-AAAAGCATCAATATGATG
65 TTAGACTTTACAAAAAATGGTGGGAAAAATGCGTTTCTTG-CAAAACGAAAGCATCAATATGATG
* * * * *
2368091 TATCCTAATAAGAAGACAGTGATTGTGGTGCCTAAACCAGAAAAGAATGGGGATTAGTATGAGTA
129 TATCCTAATGAGAAGACAATGTTTATGGTGCCTAATCCAGAAAAGAATGGGGATTAGTATGAGTA
* * *
2368156 TTCATGCTTCTCAT-ATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAATGTTT
194 TTCATGTTTGTC-TCATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTT
* * * * *
2368220 TTCTTGCAACCCCAAAGCATCAATTTCATGTATCCCAATGAAAGGAATATGTTTTGGCTTCACAA
258 TTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTC-C-A
* * * * *
2368285 TT-TTGAAAAGAATAGAGACAGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTAA
321 TTCTCGAAAAGACT-G-GACAGTTACGAGAATCGATACTTGTCTTATTTAAGGAATGAACTTTGA
*
2368349 TTTAAAGGAAAATAGGGCAAAGAAAA
384 TTTAAAGGAAAATAGGG-AAAAAAAA
2368375 GATTATGGTG
Statistics
Matches: 1584, Mismatches: 201, Indels: 84
0.85 0.11 0.04
Matches are distributed among these distances:
468 46 0.03
469 169 0.11
470 147 0.09
471 69 0.04
472 378 0.24
473 378 0.24
474 69 0.04
475 326 0.21
476 2 0.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (470 bp):
CCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAAGCACGAACT
TAGACTTTACAAAAAATGGTGGGAAAAATGCGTTTCTTGCAAAACGAAAGCATCAATATGATGTA
TCCTAATGAGAAGACAATGTTTATGGTGCCTAATCCAGAAAAGAATGGGGATTAGTATGAGTATT
CATGTTTGTCTCATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTC
TTGCGACACCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCATTCTC
GAAAAGACTGGACAGTTACGAGAATCGATACTTGTCTTATTTAAGGAATGAACTTTGATTTAAAG
GAAAATAGGGAAAAAAAATTCTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGATG
AATATGTTTATAGTG
Found at i:2368913 original size:882 final size:880
Alignment explanation
Indices: 2367487--2369259 Score: 2290
Period size: 882 Copynumber: 2.0 Consensus size: 880
2367477 ATGAATGTGT
2367487 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGA
1 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGA
** * ** *
2367552 CACGATGACTTTGCAAAAAATGGTGGGAGAAATGCGTTTCTTGCGAAACGAAAGCATCGTTATGA
66 CAAAATGACTTT-CAAAAAAT-GTGGGAG--ATGCG--T-TTGCAAAACGAAAGCATCAATACGA
* *
2367617 TGTATCCTAAGGACAAGACTATGTTTATGGTGCCTTATCTAGAAAAGAATGGGGATTAGTATGAG
124 TGTATCCTAAGGA-AAGACAATGTTTATGGTGCCTTATCTAGAAAAGAATAGGGATTAGTATGAG
* * ** * *
2367682 TATTCATGTTTGTATTATTTCAATAACAAACTTTGATTCCATTAAAAACTGTGGAAAGAAAAGTT
188 TAGTCATGTTTATATTATTT-AATAACAAACTTAAATTCCATCAAAAACGGTGGAAAGAAAAGTT
** * * * *
2367747 TTTCTTGTGACAAAACATGAATTTCATGTATCCTAATAAAAGGAATGTGTTTTGGCTTCACAATC
252 TTTCTTGCAACAAAACATCAATCTCATGTATCCTAATAAAAGAAATGTGTTTTGGCCTCACAATC
* * * * *
2367812 TTGAAAAGAACTGAGACAGTTATGAGAATCGATGCCTGTCTTATATAAGGGATGAACTTTGATTC
317 ATGAAAAGAACTGAGACAGTTACGAGAATCGATGCCTCTCTTATATAAGGGATGAACATCGATTC
*
2367877 AAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAA
382 AAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCATAA
* * * * *
2367942 TGAGAAGATTATGTTTGTAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCAATATT
447 TGAGAAGAATACGTTTATAGTGCCTAATCACAAAATGAACGAAGATCATTACTAGAATCAACATT
* ** * * * *
2368007 TGTCTTTTTTGAAGCATGAACTTAGACTTTACAAAAA-ATGGTGGG-AAAAAGCTTTTCTTGTGA
512 TATCTCATTTGAAGCACGAACTTAGACTTTA-AAAAATATGGAGGGAAAAAAGCCTTTCTTG-CA
* *
2368070 AAA-AAAAGCATCAATATGATGTATCCTAATA-AGAAGACAGTGATTGTGGTGCCTAAACC-AGA
575 AAACAAAAGCATCAATACGATGTATCCTAA-AGAGAAGACAGTGATTATGGTGCCTAAACCTA-A
2368132 AAAGAATGGGGATTAGTATGAGTATTCATGCTTCTCATATTTAAGAGACAAACTTTGATTCTATC
638 AAAGAATGGGGATTAGTATGAGTATTCATGCTTCTCATATTTAAGAGACAAACTTTGATTCTATC
* *
2368197 AAAAACGGTGGAAGGAAATGTTTTTCTTGCAACCCCAAAGCATCAATTTCATGTATCCCAATGAA
703 AAAAACGGTGGAAGGAAA-GTTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCCAATGAA
*
2368262 AGGAATATGTTTTGGCTTCACAATTTTGAAAAGAA-TAGAGACAGTTACGAGAATCGATGCTTGT
767 AGGAATATGTTTTGGCTTCACAATCTTGAAAAGAACT-GAGACAGTTACGAGAATCGATGCTTGT
* * *
2368326 CTTATTTAAGGGATGAACTTTAATTTAAAGGAAAATAGGGCAAAGAAAAGA
831 CGTATTTAAGGGATGAACATCAATTTAAAGGAAAATA-GGCAAAGAAAAGA
* * *
2368377 TTATGGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACGTTTGTCTCATTTGAGG
1 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGA
*
2368442 CATAAACTTAGACTTT-AAAAAAT-T-TG-G-TG-G-TTGCAAAACGAAAGCATCAATACGATGT
66 CA-AAA--T-GACTTTCAAAAAATGTGGGAGATGCGTTTGCAAAACGAAAGCATCAATACGATGT
2368500 ATCCTAAAAGG-AAGACAATGTTTATGGTGCCTTATCCT-GAAAAGAATAGGGATTAGTATGAGT
127 ATCCT--AAGGAAAGACAATGTTTATGGTGCCTTAT-CTAGAAAAGAATAGGGATTAGTATGAGT
* * * *
2368563 AGTCATGTTTATCTTATTT-ATGAGACAAACTTAAATTCTATCAAAAACGGTGGAAGGAAAATTT
189 AGTCATGTTTATATTATTTAAT-A-ACAAACTTAAATTCCATCAAAAACGGTGGAAAGAAAAGTT
* * *
2368627 TTTCTTGCAACATCAAAGCATCAATCTCATGTATCCTAATGAACGAAATGTGTTTTGGCCTCCCA
252 TTTCTTGCAACA--AAA-CATCAATCTCATGTATCCTAATAAAAGAAATGTGTTTTGGCCTCACA
* * * *
2368692 ATCATGAAAAGAACTGAGACAGTTACGAGAATCGATTCTTCTCTTATTTATGGTG-TGAACATCG
314 ATCATGAAAAGAACTGAGACAGTTACGAGAATCGATGCCTCTCTTATATAAGG-GATGAACATCG
* *
2368756 TTTTAAAGGAAAATA-GGCAAAGAAAAGA-TTCCAATGCAAAAGAAAATCATCAATATCATTTAT
378 ATTCAAAGGAAAATAGGGCAAAGAAAAGATTTCC-ATGCAAAAGAAAATCATCAATATCATTTAT
*
2368819 CATAATGAGGAA-AATGCGTTTATAGTGCCTAATCACAAAATGAACGAAGATCATTACTAGAATC
442 CATAATGA-GAAGAATACGTTTATAGTGCCTAATCACAAAATGAACGAAGATCATTACTAGAATC
* * *
2368883 TACATTTATCTCATTTGAGGCACGAACTTAGACTTTAAAAAATTTGGAGGGAAAAAAGCCTTTCT
506 AACATTTATCTCATTTGAAGCACGAACTTAGACTTTAAAAAATATGGAGGGAAAAAAGCCTTTCT
* * * * * * *
2368948 TGCAAAACGAAAGCATGAATACGATGTATCCTAAAGAGAAGACATTGTTTATGTTGCCTTATCCT
571 TGCAAAACAAAAGCATCAATACGATGTATCCTAAAGAGAAGACAGTGATTATGGTGCCTAAACCT
* * * * * **
2369013 AAAGAGAATGGTGATTAGTATGAGTATTCATGTTTGTCTTATTTGTGAGACAAACTTTGATTCTA
636 AAAAAGAATGGGGATTAGTATGAGTATTCATGCTTCTCATATTTAAGAGACAAACTTTGATTCTA
* ** * *
2369078 TCAAAAACGGTGGAATGAAAGTTTTTCTTGGGACATCAAAGCATCAATGTCATGTATCCTAATGA
701 TCAAAAACGGTGGAAGGAAAGTTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCCAATGA
* * * *
2369143 AGGGAATGTGTTTTGGCTTCACAATCTTGAAAAGAACTGAGACAGTTACGAGAATTGATTCTTGT
766 AAGGAATATGTTTTGGCTTCACAATCTTGAAAAGAACTGAGACAGTTACGAGAATCGATGCTTGT
* **
2369208 CGTATTTAAGGTATGAACATCGTTTTAAAGGAAAATAGGCAAAGAAAAGA
831 CGTATTTAAGGGATGAACATCAATTTAAAGGAAAATAGGCAAAGAAAAGA
2369258 TT
1 TT
2369260 CCAATGCAAA
Statistics
Matches: 769, Mismatches: 93, Indels: 51
0.84 0.10 0.06
Matches are distributed among these distances:
878 2 0.00
879 1 0.00
880 135 0.18
881 26 0.03
882 273 0.36
883 245 0.32
884 3 0.00
885 2 0.00
888 1 0.00
889 1 0.00
890 65 0.08
891 1 0.00
892 7 0.01
893 1 0.00
894 6 0.01
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (880 bp):
TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGA
CAAAATGACTTTCAAAAAATGTGGGAGATGCGTTTGCAAAACGAAAGCATCAATACGATGTATCC
TAAGGAAAGACAATGTTTATGGTGCCTTATCTAGAAAAGAATAGGGATTAGTATGAGTAGTCATG
TTTATATTATTTAATAACAAACTTAAATTCCATCAAAAACGGTGGAAAGAAAAGTTTTTCTTGCA
ACAAAACATCAATCTCATGTATCCTAATAAAAGAAATGTGTTTTGGCCTCACAATCATGAAAAGA
ACTGAGACAGTTACGAGAATCGATGCCTCTCTTATATAAGGGATGAACATCGATTCAAAGGAAAA
TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCATAATGAGAAGAA
TACGTTTATAGTGCCTAATCACAAAATGAACGAAGATCATTACTAGAATCAACATTTATCTCATT
TGAAGCACGAACTTAGACTTTAAAAAATATGGAGGGAAAAAAGCCTTTCTTGCAAAACAAAAGCA
TCAATACGATGTATCCTAAAGAGAAGACAGTGATTATGGTGCCTAAACCTAAAAAGAATGGGGAT
TAGTATGAGTATTCATGCTTCTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAA
GGAAAGTTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCCAATGAAAGGAATATGTTTTG
GCTTCACAATCTTGAAAAGAACTGAGACAGTTACGAGAATCGATGCTTGTCGTATTTAAGGGATG
AACATCAATTTAAAGGAAAATAGGCAAAGAAAAGA
Found at i:2369260 original size:474 final size:471
Alignment explanation
Indices: 2368377--2378019 Score: 10211
Period size: 475 Copynumber: 20.3 Consensus size: 471
2368367 AAAGAAAAGA
* *
2368377 TTATGGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACGTTTGTCTCATTTGAGG
1 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGG
*
2368442 CATAAACTTAGACTTTAAAAAATT--TGGTG------G------TTGCAAAACGAAAGCATCAAT
66 CATGAACTTAGACTTTAAAAAATTGGTGG-GAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAAT
* *
2368493 ACGATGTATCCTAAA-AGGAAGACAATGTTTATGGTGCCTTATCCTGAAAAGAATAGGGATTAGT
130 ATGATGTATCCTAAAGA-GAAGACAATGTTTATGTTGCCTTATCCTGAAAAGAAT-GGGATTAGT
* * * **
2368557 ATGAGTAGTCATGTTTATCTTATTTATGAGACAAACTTAAATTCTATCAAAAACGGTGGAAGGAA
193 ATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAA
* * * * * *
2368622 AATTTTTTCTTGCAACATCAAAGCATCAATCTCATGTATCCTAATGAACGAAATGTGTTTTGGCC
258 AAGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGTGTTTTGG-C
* * * * *
2368687 TCCCAATCATGAAAAGAACTGAGACAGTTACGAGAATCGATTCTTCTCTTATTTATGGTG-TGAA
322 TTCCAATCTTGAAAAGAACTGAGACAGTTACGAGAATCGATGCTTGTCTTATTTAAGG-GATGAA
* * *
2368751 CATCGTTTTAAAGGAAAATAGGCAAAGAAAAGATTCCAATGCAAAAGAAAATCATCAATATCATT
386 CTTTGATTTAAAGGAAAATAGGCAAAGAAAAGATTCC-ATGCAAAAGAAAATCATCAATATCATT
* * *
2368816 TATCATAATGAGGAAAATGCGT
450 TATCCTAATGAGGAGAATGTGT
* * *
2368838 TTATAGTGCCTAATCACAAAATGAACGAAGATCATTACTAGAATCTACA-TTTATCTCATTTGAG
1 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA-AGTTTGTCTCATTTGAG
* * *
2368902 GCACGAACTTAGACTTTAAAAAATTTGGAGGGAAAAAAGCCTTTCTTGCAAAACGAAAGCATGAA
65 GCATGAACTTAGACTTTAAAAAA-TTGGTGGGAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAA
* *
2368967 TACGATGTATCCTAAAGAGAAGACATTGTTTATGTTGCCTTATCCT-AAAGAGAATGGTGATTAG
129 TATGATGTATCCTAAAGAGAAGACAATGTTTATGTTGCCTTATCCTGAAA-AGAATGG-GATTAG
** *
2369031 TATGAGTATTCATGTTTGTCTTATTTGTGAGACAAACTTTGATTCTATCAAAAACGGTGGAATG-
192 TATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGA
* * *
2369095 AAAGTTTTTCTTGGGACATCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGC
257 AAAGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGTGTTTTGGC
* * * *
2369160 TTCACAATCTTGAAAAGAACTGAGACAGTTACGAGAATTGATTCTTGTCGTATTTAAGGTATGAA
322 TTC-CAATCTTGAAAAGAACTGAGACAGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAA
* * * *
2369225 CATCGTTTTAAAGGAAAATAGGCAAAGAAAAGATTCCAATGCAAAAAAAAAAAAATTCATCAATA
386 CTTTGATTTAAAGGAAAATAGGCAAAGAAAAGATTCC-ATGC----AAAAGAAAA-TCATCAATA
* * *
2369290 TCATTTAT-CTAAATGAGGTGAATATGA
445 TCATTTATCCT-AATGAGGAGAATGTGT
* ** * * * *
2369317 TTGTAGTGCCTAATTGCAAAATGAATGAAGATCATTGCTAGAATCCAACTTTGTCTCATTTAAAG
1 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGG
* * *
2369382 CATAAACTTAGACTTTACAAAAAATGGTGGGAGAAAAGCCTTTCTTGCAAAACGAAAGCATCAAT
66 CATGAACTTAGACTTTA-AAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAAT
* * * * * *
2369447 TTGATGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTTATCCTAAAAAAAATAGGGTTTAGTA
130 ATGATGTATCCTAAAGAGAAGACAATGTTTATGTTGCCTTATCCTGAAAAGAAT-GGGATTAGTA
* * * * *
2369512 TGAGTATTCATATTTGTCATATTTAAGAGATAAACTTTGATTATATCAAAAACGTTGGAAGGAAA
194 TGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAA
* * * *
2369577 AGTTTTTCTTACGACACCAAAACATCAA--TCATGTATCCTAAGGAAGGGAATTTGTTTTGGC-T
259 AGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTT
* * * ** ** * *
2369639 CCGATTCTCGTAAAGAA-TAGAGATTGTTGTGAGAATCAATGCTTGTCTTATTTAAGGTATGAAC
324 CC-AATCTTGAAAAGAACT-GAGACAGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAAC
* *
2369703 TTTGATTTAAAGGAAAGTAGGGC-AAGTAAATGATTTCCATGCAAAAGAAAATCATCAATATCAT
387 TTTGATTTAAAGGAAAATA-GGCAAAG-AAAAGA-TTCCATGCAAAAGAAAATCATCAATATCAT
2369767 TTATCCTAATGAGGAGAATGTGT
449 TTATCCTAATGAGGAGAATGTGT
* * ** * * *
2369790 TTATTGTACCTAATCACAAAACAAATAAATATCATTGCTAGAAT-CAA-TATTCGTCTC-TTATG
1 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGT-TT-GTCTCATT-TG
* * * * * *
2369852 AAGCGTGAACTTATACTTTGCAAAAAAAATT-GTGGGAGAAAAGCCTTTCTTGCGAAACGTAAGC
63 AGGCATGAACTTAGACTTT----AAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACGAAAGC
* * * * **
2369916 GTCAATATGATGTATCCTAACGAGAAGACAATGATTAT-TGTGCCTAAT-CTGGAAAAGGACGGG
124 ATCAATATGATGTATCCTAAAGAGAAGACAATGTTTATGT-TGCCTTATCCT-GAAAA-GAATGG
* * * *
2369979 GATTAGTATGAGTATTCATGTTTCTCATATTTAAGAGACAAGCTTTGATTCTATCAAAAATGGTG
186 GATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTG
** * * * *
2370044 GAAGCCAAAGTTTTTCTTGCGACCCCAAAGCGTCAATTTCTTGTATCTTAATGAAGGGAATGTGT
251 GAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGTGT
* * * **
2370109 TTTGGCTTCGCAATCTTGAAAAGAACAGAGATAGTTACGAGAATTGATGCTTGTCTTATAAAAGG
316 TTTGGCTTC-CAATCTTGAAAAGAACTGAGACAGTTACGAGAATCGATGCTTGTCTTATTTAAGG
* *
2370174 GATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTTCAAGCAAAA-AAAATCATCAA
380 GATGAACTTTGATTTAAAGGAAAATA-GGCAAAGAAAAGA-TTCCATGCAAAAGAAAATCATCAA
* * *
2370238 TATCAATTATCCTACTAAGGAGAATGTGT
443 TATCATTTATCCTAATGAGGAGAATGTGT
* * * * *
2370267 TTATAATGCCTAATCACAAAATAAATTAAAATCATTACTAGAATCCAAGTTTGTCTCATTTAAGG
1 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGG
* * * * *
2370332 CGTGAACTTAGACTTTAAAAAA-TGAAGTGGGAAAAAAACCTTTTTTGCAAAATGAAAGCTTCAA
66 CATGAACTTAGACTTTAAAAAATTG--GTGGGAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAA
** * * * * * *
2370396 TATTTTGTATCTTAAAGAGAGGACTATGTTTATAG-TACCTTATCCTGAAAAGAATGGGAATAGC
129 TATGATGTATCCTAAAGAGAAGACAATGTTTAT-GTTGCCTTATCCTGAAAAGAATGGGATTAGT
* * * *
2370460 AAGAGTATTCATGTTTGTCTCT-TTTAAGGGAAAAACTTTGATTCTATC-AAAACAGTGGAAGGA
193 ATGAGTATTCATGTTTGTCT-TATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGA
* * * **
2370523 AAAGTTTTTCTTACGACACCAAAGCATCAATTTCAAGTATCCTAATGAAGGGAATTTGTTTTTCC
257 AAAGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGTGTTTTGGC
* * **
2370588 TTCCCAATCTTGAAAAGAATTGAGACAGTTACGAGAATCGATTCTTGTCTTATTTAAGCAATGAA
322 TT-CCAATCTTGAAAAGAACTGAGACAGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAA
* *
2370653 CTTTGATTTAAAGGAAAATAGGACAAAGAAAAGATTTTCATGCAAAAAAAAATCATCAATATCAT
386 CTTTGATTTAAAGGAAAATAGG-CAAAGAAAAGA-TTCCATGCAAAAGAAAATCATCAATATCAT
* * *
2370718 TTATCCTACTAAAGAGAATGTGT
449 TTATCCTAATGAGGAGAATGTGT
* * *
2370741 TTATAATGCCTAATCACAAAATAAATGAAAATCATTACTAGAATCCAAGTTTGTCTCATTTGAGG
1 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGG
* *
2370806 CATGAACTTAGACATTAAAAAATTTGGTGGGAAAAAAGCCTTTCTTG-AGAAATGAAAGCATCAA
66 CATGAACTTAGACTTTAAAAAA-TTGGTGGGAAAAAAGCCTTTCTTGCA-AAACGAAAGCATCAA
** *
2370870 TACAATGTATCATAAAGAGAAGACAATGTTTATGTTGCCTTA-CGCTGAAAAGAATGGGGATTAG
129 TATGATGTATCCTAAAGAGAAGACAATGTTTATGTTGCCTTATC-CTGAAAAGAAT-GGGATTAG
* * *
2370934 TATGAGTATTCATGTTTGTCATATTTAAGAGACACACTTTGATTCTATCAAAAACGGTGGAAGGG
192 TATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGA
* * **
2370999 AAAGTTTTCCTTGCGACACCAAAGAATCAATTTCATGTATCCTAATGAAGCAAATGTGTTTTGGC
257 AAAGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGTGTTTTGGC
* * ** * * * * *
2371064 -TCCGATTCTTGTAAAGAA-TGGAGATTGTTATGAGAAACGATGCTTCTCATCTTTGAA-GGATG
322 TTCC-AATCTTGAAAAGAACT-GAGACAGTTACGAGAATCGATGCTTGTCTTATTT-AAGGGATG
* ** ** *
2371126 AACTTTAAAATAAATAAAAATAGGTCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATC
384 AACTTTGATTTAAAGGAAAATAGG-CAAAGAAAAGA-TTCCATGCAAAAGAAAATCATCAATATC
*
2371191 ATTTATCCTAATTAGGAGAATGTGT
447 ATTTATCCTAATGAGGAGAATGTGT
* * * **
2371216 TTATAGTACCTAATCATAAAATTAATGAAGATCATTACTAGAATCCTCGTTTGTCTCATTTGAGG
1 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGG
** * * * *
2371281 CACAAACCTAGACATTAAAAAATTTGGTGGGAAAAAAGCCTTTCTTGCAAAATGAAAGCATCATT
66 CATGAACTTAGACTTTAAAAAA-TTGGTGGGAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAAT
* * * *
2371346 ACGATGTATTCTAAAGAGAAGACTATGTTTATGTTGCCTTATGCTGAAAAGAATGGGGATTAGTA
130 ATGATGTATCCTAAAGAGAAGACAATGTTTATGTTGCCTTATCCTGAAAAGAAT-GGGATTAGTA
* * * * * * *
2371411 TGAGTATTCATGTTTGCCATATTTAAGAGACAAACTTTAATTCTATCGAAAATGGGGGCAGGAAA
194 TGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAA
* * *
2371476 AGTTTTTCTTGGGACATCAAAGAATCAATTTCATGTATCCTAATGAAGGGAATGTGTTTTGGC-T
259 AGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTT
* * * * * * * * *
2371540 CCGATTCTCGTAAAGAA-TG-GAAATTGTTACGAGAAACGATGCTTATCATCTTTAGGGGATGAA
324 CC-AATCTTGAAAAGAACTGAGACA--GTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAA
* * ** *
2371603 CTTTGTTTTAAAGGAAAATAGGCCAAACAAAAGATTTTTATGCAAAAGAATATCATCAAATATCA
386 CTTTGATTTAAAGGAAAATAGG-CAAAGAAAAGA-TTCCATGCAAAAGAAAATCATC-AATATCA
2371668 TTTATCCTAATGAGGAGAATGTGT
448 TTTATCCTAATGAGGAGAATGTGT
* * *
2371692 TTATAGTGCCTAATCAC-AAATGATTGAAGATCACTACTAAAATCCAAGTTTGTCTCATTTGAGG
1 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGG
* * * ** *
2371756 CATGAACTTAGGCTTTACAAAAAATGGTGGGAAAAATGCCTTTCTTGTGAAATGAAAGCATCAAT
66 CATGAACTTAGACTTTA-AAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAAT
* *
2371821 ATGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTAATCC-GAAAAAGAATAGGGATTAGT
130 ATGATGTATCCTAAAGAGAAGACAATGTTTATGTTGCCTTATCCTG-AAAAGAAT-GGGATTAGT
* * * * *
2371885 ATGAGTATTCATGTTTGCCATATTTAAGAGACAAACTTTGATTCTATCAAAAATGGGGGCAGGAA
193 ATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAA
* *
2371950 AAGTTTTTCTTGCGACATCAAAGAATCAATTTCATGTATCCTAATGAAGGGAATGTGTTTTGGC-
258 AAGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGTGTTTTGGCT
* * * * * * * *
2372014 TCCGAT-TCTCATAAAGAA-TG-GAAATTGTTACGAGAAACGATGCTTATCATCTTTAGGGGATG
323 TCCAATCT-TGA-AAAGAACTGAGACA--GTTACGAGAATCGATGCTTGTCTTATTTAAGGGATG
* * ** * *
2372076 AACTTTGTTTTAAAGGAAAATAGGCCAAACAAAAGATTTTTATGCAAAAGAATATCATTAAATAT
384 AACTTTGATTTAAAGGAAAATAGG-CAAAGAAAAGA-TTCCATGCAAAAGAAAATCA-TCAATAT
2372141 CATTTATCCTAATGAGGAGAATGTGT
446 CATTTATCCTAATGAGGAGAATGTGT
* * *
2372167 TTATAGTGCCTAATCAC-AAATGATTGAAGATCACTACTAAAATCCAAGTTTGTCTCATTTGAGG
1 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGG
* * * ** *
2372231 CATGAACTTAGGCTTTACAAAAAATGGTGGG-AAAATGCCTTTCTTGTGAAATGAAAGCATCAAT
66 CATGAACTTAGACTTTA-AAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAAT
* *
2372295 ATGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTAATCC-GAAAAAGAATAGGGATTAGT
130 ATGATGTATCCTAAAGAGAAGACAATGTTTATGTTGCCTTATCCTG-AAAAGAAT-GGGATTAGT
* * * *
2372359 ATGAGTATTCATGTTTGTCTCATTTAAGAGATAAACTTTGACTCTATCAAAAATGGTGGAAGGAA
193 ATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAA
* * * * * * * * *
2372424 AAGTGTTTCTTGCGACCCCAAAGCATCAATTTAATGTGTCGTTATAAAGAGAATGTG-TTTGTCT
258 AAGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGTGTTTTGGCT
* * * ** * *
2372488 CCCAATC-TCATAAAGAAATGAGATTGTTACGAGAATTGATGCTTGTCTTATTTAAGGGATAAAC
323 TCCAATCTTGA-AAAGAACTGAGACAGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAAC
* * * ** * *
2372552 TTTGATTTTAAGGAAAATAGTGCAAAGCAAAGATTCTTAT-TTAAAGAACATCGTCAATATCATT
387 TTTGATTTAAAGGAAAATAG-GCAAAGAAAAGATTC-CATGCAAAAGAAAATCATCAATATCATT
* * * *
2372616 TATCGTAATGAGAAAAATATGT
450 TATCCTAATGAGGAGAATGTGT
* * * * ** *
2372638 TTATTGTGTCTAATCACAACATGAATAAAGGCCATTACTAGAACCCAAGTTTGTCTC-TTTCGCA
1 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTT-G-A
* * * * * *
2372702 -GCACGAACTTATACTTTACAAAAACTAGTGGGAAAAATGCCTTTCTTGCAAAACAAAAGCATCA
64 GGCATGAACTTAGACTTTA-AAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACGAAAGCATCA
* * ** * * *
2372766 GTATGATGTATCCTAATGAGAAGACAATGTTTATGGCGCCTAAT-TTGGAAAA-AATTAGGATTA
128 ATATGATGTATCCTAAAGAGAAGACAATGTTTATGTTGCCTTATCCT-GAAAAGAA-TGGGATTA
* * * * *
2372829 TTATGAGTATTCTTGTTTGTCTTATTTAAGAGACAAACTTTAATTCTATCAAAAACGATGAAAGG
191 GTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGG
* * * * *
2372894 AAAAGTTTTTCTTGTGACATCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGCGTTTTGG
256 AAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGTGTTTTGG
* * * *
2372959 CTTCATAATCTTGAAAAGAACTGAGACAGTTATGAGAATCGATTCTTGTCTTATTTAAGGTATGA
321 CTTC-CAATCTTGAAAAGAACTGAGACAGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
* * ** * *
2373024 AC-ATCATTTTAAAGGAAAATAGGCAAAGAAAAGATTCCAACCCAAAAGAAAGTCATCAATATAA
385 ACTTTGA-TTTAAAGGAAAATAGGCAAAGAAAAGATTCC-ATGCAAAAGAAAATCATCAATATCA
* **
2373088 TTTATCCGAATGAGGAGAATGCAT
448 TTTATCCTAATGAGGAGAATGTGT
* *
2373112 TTATAGTGCCTAATTAC-AAATGAATGAAGATCATTACTAGAATCCACGTTTGTCTCATTT-ATG
1 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGA-G
* * * * *
2373175 GTATGAACCTAGACTTTAAAAAATTTGCTGGGAAAAAAGCCTTTCTTGCAAAATGAAATCATCAA
65 GCATGAACTTAGACTTTAAAAAA-TTGGTGGGAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAA
* *
2373240 TATGATGTATCCTAAAGAGAAGACAATGTTTATGTTGCCTTATGCTAAAAAGAATAGGGATTAGT
129 TATGATGTATCCTAAAGAGAAGACAATGTTTATGTTGCCTTATCCTGAAAAGAAT-GGGATTAGT
* * * * *
2373305 ACGAGTATTCATGTTTGTCATATTTAAGAGACAAACTCTGGTTCTATCAAAAATGGTGGAAGGAA
193 ATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAA
* * * *
2373370 AAGTTTTTCTTACAACACCAAAGAATCAATTTCATGTATCCTAATGAAAGGAATGTG-TTTGGC-
258 AAGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGTGTTTTGGCT
* * ** * * * * *
2373433 TCCGAT-TCTCATAAAGAA-TGGAGATTGCTACGAGAAACGATGCTTGTCATCTGTAAGGGATGA
323 TCCAATCT-TGA-AAAGAACT-GAGACAGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
* *
2373496 ATTTTGATTTAAAGGAAAATAGGCCAAACAAAAGATTTCCATGCAAAAGAAAATCA-CTAATATC
385 ACTTTGATTTAAAGGAAAATAGG-CAAAGAAAAGA-TTCCATGCAAAAGAAAATCATC-AATATC
*
2373560 ATTTACCCTAATGAGGAGAATGTGT
447 ATTTATCCTAATGAGGAGAATGTGT
* *
2373585 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT-CAATATTTGTCGT-TTTTGA
1 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAA-GTTTGTC-TCATTTGA
* * * * ** * **
2373648 AGCACGAGCTTAGACTTCACAAAAAAGGGTAGGAAAAAAGCCTTTCTTGTGAAACGAAAGCATCA
64 GGCATGAACTTAGACTTTA-AAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACGAAAGCATCA
* * *
2373713 ATATGATGTATCCTAATA-AGAAGACAATGATTATGTTGCCTAAT-CTGGAAAAAAATTGGGATT
128 ATATGATGTATCCTAA-AGAGAAGACAATGTTTATGTTGCCTTATCCT-GAAAAGAA-TGGGATT
* * * *
2373776 AGTAT-ATGTATTCATGTTTCTCATATTTAACA-A-AAAGCTTTGATTCTATCAAAAACGATGGA
190 AGTATGA-GTATTCATGTTTGTCTTATTTAAGAGACAAA-CTTTGATTCTATCAAAAACGGTGGA
** * *
2373838 AAAAAAAGTTTTTCTTGTGACCCCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGTGTTT
253 AGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGTGTTT
* **
2373903 TGGCTTCGAAATCTTGAAAAGAA-T-----A---A--AGAATCGATGCTTGTCTTATTTAAAAGA
318 TGGCTTC-CAATCTTGAAAAGAACTGAGACAGTTACGAGAATCGATGCTTGTCTTATTTAAGGGA
* * * *
2373957 TGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAGGATTTTCAAGCAAAA-ACAAGTCATCAAT
382 TGAACTTTGATTTAAAGGAAAATA-GGCAAAGAAAAGA-TTCCATGCAAAAGA-AAATCATCAAT
* * *
2374021 ATCAATTATCCTGATGAAGAGAATGTGT
444 ATCATTTATCCTAATGAGGAGAATGTGT
* * *
2374049 TTATAATGCCTAACCAC-AAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCCCATTTGAGG
1 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGG
**** * * **
2374113 CATGAAC-TAGAATCCAAGTTTGTCCCATTTGAGGCATGAACTTGGACTTTAAAAA--ATTTAGG
66 CATGAACTTAG-A--C---TTT-AAAAAATT--GG--TG-----GGA----AAAAAGCCTTT-CT
* * * * * *
2374175 GGAAGAAAGCCTTTCTTGCAAAACGA--AAGCATCAATATGATGTATCTTAAAGAGAAGACAATG
110 TGCA-AAA------C--G-AAAGC-ATCAA-TAT-GA-----TGTATCCTAAAGAGAAGACAATG
* * *
2374238 TTTATGTTGCCTTATCTTGAAAAGAATAGGGATAAGTATGAGTATTCATGTTTGTCTTATTTATG
157 TTTATGTTGCCTTATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAG
* * *
2374303 AGACAAACTTTGATTCTATCAAAAACGGTGGACGAAAAAGTTTTTCTTGCGACCCCAAAGCATCA
221 AGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCA
* *
2374368 ATTTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCGCAATCATGAAAAGAACAGAGACAGT
286 ATTTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTC-CAATCTTGAAAAGAACTGAGACAGT
* * *
2374433 TAGGAGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGTGCAAAGA
350 TACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAG-GCAAAGA
* * **
2374498 AAAGATTCTCATGCAAAAGAAAATCATCAATATCATTTATGCTAATAAGGAGAACATGT
414 AAAGATTC-CATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGT
* * * *
2374557 TTATTGTGCCTAATCACAACATGAATAAAG-TCCATTACTAGAATCCAAGTTTGTCTCATTTGAA
1 TTATAGTGCCTAATCACAAAATGAATGAAGAT-CATTACTAGAATCCAAGTTTGTCTCATTTGAG
* * * * *
2374621 GCGTGAACTTAGACTTTACAAAAAATGGTGGG-AAAAAGCCTTTCTTGCGAAACAAAAGCATCAG
65 GCATGAACTTAGACTTTA-AAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAA
* * * * * *
2374685 TATGATGTATCCTAAAGAGAAGACTAGGTTTATGGTGCTTTACCCTGAAAAGAATGGGAGCTAGT
129 TATGATGTATCCTAAAGAGAAGACAATGTTTATGTTGCCTTATCCTGAAAAGAATGGGA-TTAGT
* * * * * *
2374750 ATGAGTATCCATGTTTGTCTTATTTTAGAGTCAAACTTTTATTCTATCAAAAATGGTGGAAGGAG
193 ATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAA
* * * *
2374815 AAGTTTTTCTTGTGACATCAAAGCATCAATTTCATGTTTCCTAAAGAAGGGAATGTG-TTTGGCT
258 AAGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGTGTTTTGGCT
* * * * * *
2374879 TCACAATCTTGAAAAGAACTTAAAGAGTTATGAGAATCGATGCTTGTCTTTTTTAAGAGATGAAC
323 TC-CAATCTTGAAAAGAACTGAGACAGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAAC
*
2374944 TTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAGTCATCAATATCATT
387 TTTGATTTAAAGGAAAATA-GGCAAAGAAAAGA-TTCCATGCAAAAGAAAATCATCAATATCATT
* * **
2375009 TATCCGAATAAGGAGAATGCAT
450 TATCCTAATGAGGAGAATGTGT
* *
2375031 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACGTTGGTCTCATTTGAGG
1 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGG
* * * * *
2375096 CAAGAACCTAGACTTTAAAAAATTTGCTGGGAAAAAAGCCTTTCTTACAAAAAGAAAGCATCAAT
66 CATGAACTTAGACTTTAAAAAA-TTGGTGGGAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAAT
* *
2375161 ATGATGTATCCTAAAAAGAAGACAATGTTTATGTTGCCTTATGCTGAAAA-AATGGGGATTAGTA
130 ATGATGTATCCTAAAGAGAAGACAATGTTTATGTTGCCTTATCCTGAAAAGAAT-GGGATTAGTA
* * * * * * * *
2375225 TGAGTATTCATGTTTGT-TATATTTTAGAGACGAACTCTGGTTTTGTCAAAAATGGGGGAAGGAA
194 TGAGTATTCATGTTTGTCT-TATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAA
* * * *
2375289 AAGTTTTTCTTACGACACCAAAGAATCAATTTCATGTATCCTAATGAAAGGAATGTGTTTTGGAT
258 AAGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGTGTTTTGGCT
* ** * * *
2375354 TCCCAATCATGAAAAGAACAAAGACAGTTACGAGAATCAATGCTTGTCTTATTTAAGAGATGAAT
323 T-CCAATCTTGAAAAGAACTGAGACAGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAAC
* * *
2375419 TTTGATTTTAAGGAAAATTGTGCAACGAAAAGATTCTCATGCAAAAGAAAATCATCAATATCATT
387 TTTGATTTAAAGGAAAATAG-GCAAAGAAAAGATTC-CATGCAAAAGAAAATCATCAATATCATT
** * **
2375484 TATGGTAATAAGGAGAACATGT
450 TATCCTAATGAGGAGAATGTGT
* * * *
2375506 TTATTGTGCCTAATCACAACATGAATAAAG-TCCATTACTAGAATCCAAGTTTGTCTCATTTGAA
1 TTATAGTGCCTAATCACAAAATGAATGAAGAT-CATTACTAGAATCCAAGTTTGTCTCATTTGAG
** * ** * **
2375570 GTGTTAACTTAGACTTTACAAAAAAAGGTGGG-AAAAAGCCTTTCTTGCGAAACGAAAGCATCGG
65 GCATGAACTTAGACTTTA-AAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAA
* * * *
2375634 TATGATGTATCCTAAAGAGAAGACAATGTTTATGTCGCCTAATCCAGAAAAGAATAGGGATAAGT
129 TATGATGTATCCTAAAGAGAAGACAATGTTTATGTTGCCTTATCCTGAAAAGAAT-GGGATTAGT
* *
2375699 ATGAGTATTCATGTTTGCCTTATTTATGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAA
193 ATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAA
* * * *
2375764 AAGTTCTTCTTGCGACCCCAAAGCATCAATTTCATGTATCCTAATAAAGGGAATGTGTTTTGGAT
258 AAGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGTGTTTTGGCT
* * * * * ** *
2375829 TCCCAATCATGAAAAGAACAGTGACAATTATGAGAATTAATGCTTGTCTTATTTAAGGGATAAAC
323 T-CCAATCTTGAAAAGAACTGAGACAGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAAC
* * * **
2375894 TTTGATTTTAAGGAAAATAGTGTAACGAAAAGATTCTCATGCAAAAGAAAATCATCAATATCAAA
387 TTTGATTTAAAGGAAAATAG-GCAAAGAAAAGATTC-CATGCAAAAGAAAATCATCAATATCATT
* * ** *
2375959 TATGCTAATAAGGAGAACATTT
450 TATCCTAATGAGGAGAATGTGT
* * * *
2375981 TTATTGTGCCTAATCACAACATGAATAAAG-TCCATTACTAGAATCCAAGTTTGTCTCATTTGAA
1 TTATAGTGCCTAATCACAAAATGAATGAAGAT-CATTACTAGAATCCAAGTTTGTCTCATTTGAG
* * * * *
2376045 GCGTGAACTTAGACTTTACAAAAAATGGTGGG-AAAAAGCCTTTCTTGCGAAACAAAAGCATCAG
65 GCATGAACTTAGACTTTA-AAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAA
* * *
2376109 TATGATGTATCCTAAAGAGAATACTATGTTTATGGTGCCTTATCCTGAAAAGAATGGGAGTTAGT
129 TATGATGTATCCTAAAGAGAAGACAATGTTTATGTTGCCTTATCCTGAAAAGAATGGGA-TTAGT
* * * *
2376174 ATGAGTATCCATGTTTGTCTTATTTTAGAGTCAAACTTTTATTCTATCAAAAACGGTGGAAGGAA
193 ATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAA
** * * *
2376239 AAGTTTTTCTTGTAACATCAAAGCATCAATTTCATGTTTCCTAATGAAGGGAATCTG-TTTGGCT
258 AAGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGTGTTTTGGCT
** * * *
2376303 TCACAATCTTGAAAAGAACTGAGGGAGTTATGAGAATCGATGCTTGTCTTTTTTAAGAGATGAAC
323 TC-CAATCTTGAAAAGAACTGAGACAGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAAC
* * ** *
2376368 TTTGATTTATAGGAAAATAGGGCAAAGAAAAGATTTCAATGCAAAATCAAGTCATCAATATCATT
387 TTTGATTTAAAGGAAAATA-GGCAAAGAAAAGA-TTCCATGCAAAAGAAAATCATCAATATCATT
* *
2376433 TATCCGAATGAGGAGAATGCAG-
450 TATCCTAATGAGGAGAATG-TGT
* * *
2376455 TTATAGTGCCTAATCAAAAAATGAATGAAGATCATTACTAGAATCCACGTTCGTCTCATTTGAGG
1 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGG
* * * * *
2376520 CACGAACCTAGACTTTAAAAAATTTGCTGGGAAAAAAAGCCTTTCTCGCAAAATGAAAGCATCAA
66 CATGAACTTAGACTTTAAAAAA-TTGGTGGG-AAAAAAGCCTTTCTTGCAAAACGAAAGCATCAA
* *
2376585 TATGATGTATCCTAAAGAGAAGACAATGTTTATGTTGCCTTATGCTGAAAGGAATGGGGATTAGT
129 TATGATGTATCCTAAAGAGAAGACAATGTTTATGTTGCCTTATCCTGAAAAGAAT-GGGATTAGT
* * * *
2376650 ATGAATATTCATGTTTGTCATATTTAAGAGACACACTTTGATTCTATCAAAAACGGTGGAAGGGA
193 ATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAA
* * **
2376715 AAGTTTTCCTTGCGACACCAAAGAATCAATTTCATGTATCCTAATGAAGCAAATGTGTTTTGGC-
258 AAGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGTGTTTTGGCT
* * * * * * * *
2376779 GCCGAT-TCTCATAAAGAA-TG-GA-GGTTGCAACGAGAAACGATGCTTGTCATCTTTAAAGGAT
323 TCCAATCT-TGA-AAAGAACTGAGACAGTT---ACGAGAATCGATGCTTGTCTTATTTAAGGGAT
* *
2376840 GAATTTTGATTTAAAGGAAAATAGGCCAAAGAAAAGATTGCCATGCAAAAGAAAATCACCAATAT
383 GAACTTTGATTTAAAGGAAAATAGG-CAAAGAAAAGATT-CCATGCAAAAGAAAATCATCAATAT
*
2376905 CATTTGTCCTAATGAGGAGAATGTGT
446 CATTTATCCTAATGAGGAGAATGTGT
* ** *
2376931 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT-CAATATTTGTCTTTTTTGAA
1 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAA-GTTTGTCTCATTTGAG
* * ** * ** *
2376995 GCACGAGCTTAGACTTTGCGAAAAGTGGTGGGAAAAAAGCCTTTCTTGTGAAACGAAAGCAACAA
65 GCATGAACTTAGACTTT-AAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAA
* * * * **
2377060 TATGATGTATCCTAATA-AGAAGATAATGATTATGGTGCCTAAT-AAGAAGATAATGATTATGGG
129 TATGATGTATCCTAA-AGAGAAGACAATGTTTATGTTGCCTTATCCTG-A-A-AA-GA--AT-GG
* * * * * *
2377123 GATCAGTATGAGTATTCATGTTTCTCATATTTAACAAAAAAACTTTGATTCTATCAAAAACGGTG
186 GATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTG
** ** * * * * *
2377188 GAAAAAAAAGTTTTTCTTGTAACTCTAAAGCATCAATTTCATGTGTCCTAATGAGGGGAATGTGC
251 GAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGTGT
* *
2377253 TTTGGCTTCATAATCTTGAAAAGAA-T-----A---A--AGAATCGATGCTTGTCTTATTTAAAG
316 TTTGGCTTC-CAATCTTGAAAAGAACTGAGACAGTTACGAGAATCGATGCTTGTCTTATTTAAGG
* * * *
2377307 GATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAGGATTTTCAAGCAAAA-ACAAGTCATCA
380 GATGAACTTTGATTTAAAGGAAAATA-GGCAAAGAAAAGA-TTCCATGCAAAAGA-AAATCATCA
* * *
2377371 ATATCAATTATCCTAATAAAGAGAATGTGT
442 ATATCATTTATCCTAATGAGGAGAATGTGT
* * *
2377401 TTATAATGCCTAATCAC-AAATGAATGAAGATCATTATTAGAATCCAAGTTTGTCTTATTTGAGG
1 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGG
* * * * * *
2377465 CACGAACTTGGACTTTACAAAATTTAG-GGGAAGAAAGCCTTTCTTGCAAAATGAAAGCATCAAT
66 CATGAACTTAGACTTTA-AAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAAT
* * * *
2377529 ACGATGTATCTTAAAGAGAAGACAATGTTTATGTTGCCTTATCCTGAAAAGAATAGGGATAAATA
130 ATGATGTATCCTAAAGAGAAGACAATGTTTATGTTGCCTTATCCTGAAAAGAAT-GGGATTAGTA
* * *
2377594 TGAGTATTCATGTTTGTCTTATTTATGAGACAAACTGTGATTCTATCAAAAATGGTAGG-AGGAA
194 TGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGT-GGAAGGAA
* *
2377658 AAGTTTTTCCTGCGACCCCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGTGTTTTGGCT
258 AAGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGTGTTTTGGC-
* * * * *
2377723 TTGCAATCATGAAAAGAACAGAGACAGTTACAAGAATCAATGCTTGTCTTATTTAAGGGATGAAC
322 TTCCAATCTTGAAAAGAACTGAGACAGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAAC
* * *
2377788 TTTGATTTTAAGGAAAATAATGCAAAGAAAAGATTCTTATGCAAAAGAAAATCATCAATATCATT
387 TTTGATTTAAAGGAAAAT-AGGCAAAGAAAAGATTC-CATGCAAAAGAAAATCATCAATATCATT
* * **
2377853 TATGCTAATAAGGAGAACATGT
450 TATCCTAATGAGGAGAATGTGT
* * * * *
2377875 TTATTGTTCCTAATCACAACATGAATAAAG-TCCATTACTAGAATCCAAGTTTGTCTCATTTGAA
1 TTATAGTGCCTAATCACAAAATGAATGAAGAT-CATTACTAGAATCCAAGTTTGTCTCATTTGAG
** * * * *
2377939 GTGTGAACTTAGACTTTATAAAAAATGGTGGG-AAAAAGCTTTTCTTGCGAAACGAAAGCATCAG
65 GCATGAACTTAGACTTTA-AAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAA
*
2378003 TATGATGTATTCTAAAG
129 TATGATGTATCCTAAAG
2378020 TGTTAGGATC
Statistics
Matches: 7793, Mismatches: 1108, Indels: 548
0.82 0.12 0.06
Matches are distributed among these distances:
461 79 0.01
462 5 0.00
463 176 0.02
464 121 0.02
465 6 0.00
466 3 0.00
467 2 0.00
468 70 0.01
469 62 0.01
470 121 0.02
471 57 0.01
472 262 0.03
473 736 0.09
474 1755 0.23
475 2621 0.34
476 521 0.07
477 214 0.03
478 150 0.02
479 252 0.03
480 159 0.02
481 22 0.00
482 5 0.00
483 1 0.00
484 1 0.00
487 1 0.00
489 3 0.00
490 14 0.00
491 3 0.00
492 3 0.00
495 4 0.00
496 71 0.01
497 110 0.01
498 3 0.00
500 2 0.00
502 2 0.00
503 1 0.00
504 5 0.00
506 1 0.00
507 4 0.00
508 113 0.01
509 49 0.01
510 3 0.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.31
Consensus pattern (471 bp):
TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGG
CATGAACTTAGACTTTAAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAATA
TGATGTATCCTAAAGAGAAGACAATGTTTATGTTGCCTTATCCTGAAAAGAATGGGATTAGTATG
AGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAG
TTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCC
AATCTTGAAAAGAACTGAGACAGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTG
ATTTAAAGGAAAATAGGCAAAGAAAAGATTCCATGCAAAAGAAAATCATCAATATCATTTATCCT
AATGAGGAGAATGTGT
Found at i:2372116 original size:159 final size:157
Alignment explanation
Indices: 2371473--2372116 Score: 331
Period size: 158 Copynumber: 4.1 Consensus size: 157
2371463 TGGGGGCAGG
* * *
2371473 AAAAGTTTTTCTTGGGACATCAAAGAATCAATTTCATGTATCCTAATGAAGGGAATGTGTTTTGG
1 AAAAGTTTTTCTTGCGAAATCAAAGAATCAATATCATGTATCCTAATGAAGGGAATGTGTTTTGG
* *
2371538 CT-CCGATTCTCGTAAAGAATGGAAATTGTTACGAGAAACGATGCTTATCATCTTTAGGGGATGA
66 -TGCCGAATCTCATAAAGAATGGAAATTGTTACGAGAAACGATGCTTATCATCTTTAGGGGATGA
2371602 ACTTTGTTTTA-AAGGAAAATAGGCCAAAC
130 ACTTTGTTTTACAA--AAAATAGGCCAAAC
* ** ** *
2371631 AAAAGATTTTT-ATGC-AAAAGAATATCATCAAATATCATTTATCCTAATG-AGGAGAATGTGTT
1 AAAAG-TTTTTCTTGCGAAATCAA-AGAATC-AATATCATGTATCCTAATGAAGG-GAATGTGTT
* * * * * *** * * * * *
2371693 TATAGTGCCTAATCACA-AATG-ATTGAAGATCACTACTA-AAATCCAAGTTTGTC-TCATTT-G
62 T-TGGTGCCGAATCTCATAAAGAATGGAA-ATTGTTACGAGAAA-CGATGCTTATCATC-TTTAG
* * * ***
2371753 AGGCATGAACTTAGGCTTTACAAAAAAT-GGTGGGAA-
123 -GGGATGAACTT-TGTTTTACAAAAAATAGG-CCAAAC
* ** * * * * * ** *
2371789 AAATGCCTTTCTTGTGAAATGAAAGCATCAATATGATGTATCCTAAAGAGAAGACAATGT-TTAT
1 AAAAGTTTTTCTTGCGAAATCAAAGAATCAATATCATGTATCCT-AA-TGAAGGGAATGTGTTTT
* * * * ** * ** * * *
2371853 GGTGCCTAATC-CGAAAAAGAATAGG-GATTAG-TATGAGTATTC-ATGTTTGCCATATTTAAGA
64 GGTGCCGAATCTC-ATAAAGAAT-GGAAATT-GTTACGAG-AAACGATGCTTATCATCTTTAGGG
** * * * **
2371914 GACAAACTTTGATTCTATC-AAAAATGGGGGC-AGG
125 GATGAACTTTG-TTTTA-CAAAAAAT-AGGCCAAAC
* *
2371948 AAAAGTTTTTCTTGCGACATCAAAGAATCAATTTCATGTATCCTAATGAAGGGAATGTGTTTTGG
1 AAAAGTTTTTCTTGCGAAATCAAAGAATCAATATCATGTATCCTAATGAAGGGAATGTGTTTTGG
*
2372013 CT-CCGATTCTCATAAAGAATGGAAATTGTTACGAGAAACGATGCTTATCATCTTTAGGGGATGA
66 -TGCCGAATCTCATAAAGAATGGAAATTGTTACGAGAAACGATGCTTATCATCTTTAGGGGATGA
2372077 ACTTTGTTTTA-AAGGAAAATAGGCCAAAC
130 ACTTTGTTTTACAA--AAAATAGGCCAAAC
2372106 AAAAGATTTTT
1 AAAAG-TTTTT
2372117 ATGCAAAAGA
Statistics
Matches: 344, Mismatches: 99, Indels: 85
0.65 0.19 0.16
Matches are distributed among these distances:
156 2 0.01
157 54 0.16
158 138 0.40
159 129 0.38
160 19 0.06
161 2 0.01
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (157 bp):
AAAAGTTTTTCTTGCGAAATCAAAGAATCAATATCATGTATCCTAATGAAGGGAATGTGTTTTGG
TGCCGAATCTCATAAAGAATGGAAATTGTTACGAGAAACGATGCTTATCATCTTTAGGGGATGAA
CTTTGTTTTACAAAAAATAGGCCAAAC
Found at i:2374127 original size:34 final size:34
Alignment explanation
Indices: 2374084--2374154 Score: 142
Period size: 34 Copynumber: 2.1 Consensus size: 34
2374074 GAAGATCATT
2374084 ACTAGAATCCAAGTTTGTCCCATTTGAGGCATGA
1 ACTAGAATCCAAGTTTGTCCCATTTGAGGCATGA
2374118 ACTAGAATCCAAGTTTGTCCCATTTGAGGCATGA
1 ACTAGAATCCAAGTTTGTCCCATTTGAGGCATGA
2374152 ACT
1 ACT
2374155 TGGACTTTAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.30
Consensus pattern (34 bp):
ACTAGAATCCAAGTTTGTCCCATTTGAGGCATGA
Found at i:2377101 original size:27 final size:27
Alignment explanation
Indices: 2377070--2377121 Score: 104
Period size: 27 Copynumber: 1.9 Consensus size: 27
2377060 TATGATGTAT
2377070 CCTAATAAGAAGATAATGATTATGGTG
1 CCTAATAAGAAGATAATGATTATGGTG
2377097 CCTAATAAGAAGATAATGATTATGG
1 CCTAATAAGAAGATAATGATTATGG
2377122 GGATCAGTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.42, C:0.08, G:0.21, T:0.29
Consensus pattern (27 bp):
CCTAATAAGAAGATAATGATTATGGTG
Found at i:2378347 original size:20 final size:22
Alignment explanation
Indices: 2378322--2378374 Score: 67
Period size: 21 Copynumber: 2.5 Consensus size: 22
2378312 ATCAATACAT
*
2378322 TGTATCGATACATGAC-CA-AA
1 TGTATCGATACATGACAAAGAA
*
2378342 TGTATCGATAC-TTACAAAGAA
1 TGTATCGATACATGACAAAGAA
2378363 TGTATCGATACA
1 TGTATCGATACA
2378375 GGTGATTGGC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
19 3 0.11
20 12 0.43
21 13 0.46
ACGTcount: A:0.40, C:0.17, G:0.15, T:0.28
Consensus pattern (22 bp):
TGTATCGATACATGACAAAGAA
Found at i:2378453 original size:13 final size:13
Alignment explanation
Indices: 2378435--2378460 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2378425 ACACACAAGA
2378435 TGTATCGATACAT
1 TGTATCGATACAT
2378448 TGTATCGATACAT
1 TGTATCGATACAT
2378461 CCCAAAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2378456 original size:32 final size:33
Alignment explanation
Indices: 2378415--2378482 Score: 102
Period size: 33 Copynumber: 2.1 Consensus size: 33
2378405 CCTTAACTAT
* *
2378415 TTGTATCGATACA-CACAAGATGTATCGATACA
1 TTGTATCGATACATCACAAAATATATCGATACA
*
2378447 TTGTATCGATACATCCCAAAATATATCGATACA
1 TTGTATCGATACATCACAAAATATATCGATACA
2378480 TTG
1 TTG
2378483 GCTTGTAACA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
32 13 0.41
33 19 0.59
ACGTcount: A:0.37, C:0.19, G:0.13, T:0.31
Consensus pattern (33 bp):
TTGTATCGATACATCACAAAATATATCGATACA
Found at i:2384428 original size:8 final size:8
Alignment explanation
Indices: 2384415--2384445 Score: 53
Period size: 8 Copynumber: 3.8 Consensus size: 8
2384405 ATTTGATTAA
2384415 ATTTTGTG
1 ATTTTGTG
2384423 ATTTTGTG
1 ATTTTGTG
2384431 ATTTTGTG
1 ATTTTGTG
2384439 ATGTTTG
1 AT-TTTG
2384446 ATGTTGAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 18 0.82
9 4 0.18
ACGTcount: A:0.13, C:0.00, G:0.26, T:0.61
Consensus pattern (8 bp):
ATTTTGTG
Found at i:2388991 original size:159 final size:157
Alignment explanation
Indices: 2388342--2390892 Score: 484
Period size: 158 Copynumber: 16.1 Consensus size: 157
2388332 ACAAAAGCTG
* * *
2388342 CAATATGATGTATCCTAA-AGAGAAGACAATGTTTATGGTGCCTAATTCAAAAAAGAATCGGGAT
1 CAATATCATGTATCCTAATA-AGAAGACAATGTTTATGGTGCCTAATCCAAAAAAGAATAGGGAT
* * * *
2388406 TAATATGAGTATTCATGTTTGTCTAATTTAAGAGATAAACTTTGATTCTATCAAAAACAGTGGAA
65 TAGTATGAGAATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAA
* *
2388471 GGAAAAGTGTCTCTTGCGACCGCAAAGCAT
130 -GAAAAGTTTC-CTTGCGACAGCAAAGCAT
* * ** * * *
2388501 CAATTTCATGTATCCTAGT--GAAGGGAATGTGTT-T-GTCTCCCAATCTC-ATAAAGAA-AGGA
1 CAATATCATGTATCCTAATAAGAAGACAATGT-TTATGGT-GCCTAATC-CAAAAAAGAATAGG-
* * * * ** * *** *
2388560 GATT-GTTACGAGAATTGATGCTTGTCTTCTTTAAGAGATGAACTTTGATTTTAAGGAAAATAGT
62 GATTAG-TATGAGAATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGT
** * * * * * *
2388624 ACAAAGAAAAGATTCCAGTGCAAAAGAAAATCAT
126 -GGAAGAAAAGTTTCC-TTGCGACAGCAAAGCAT
* * * * ** * * **
2388658 CAATATCCTTTATCCTAA-AGAGGAGA-ATATGTTTATTGTGTGTAAT-CACAACATGAATAAAG
1 CAATATCATGTATCCTAATA-AGAAGACA-ATGTTTATGGTGCCTAATCCA-AAAAAGAATAGGG
** * * * * * * *
2388720 ACCATTACT-AGAATCCAAGTTTGTCACTT-TTGAAG-CACGAACTTAGACTT-TA-CAAAAACT
63 ATTAGTA-TGAGAATTCATGTTTGT--CTTATTTAAGAGACAAACTTTGA-TTCTATCAAAAAC-
* * *
2388780 GGTGGGAA-AAAAGCCTTT-TTTGCGA-AACAAAAGCAT
123 AGT-GGAAGAAAAG--TTTCCTTGCGACAGC-AAAGCAT
*
2388816 CAATATGATGTATCCTAATAAGAAGACAATGTTTATGGTGCCTAATCCAAAAAAGAATAGGGATT
1 CAATATCATGTATCCTAATAAGAAGACAATGTTTATGGTGCCTAATCCAAAAAAGAATAGGGATT
* *
2388881 AGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGATA
66 AGTATGAGAATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGA-A
*
2388946 GAAAAGTTTTCCTTGCGACATCAAAGCAT
130 GAAAAG-TTTCCTTGCGACAGCAAAGCAT
* * * * * *** * *
2388975 CAATGTCATGTATCCTAAT--GAAGAAAATGTGTTTTGGCTTCATAATCTTGAAAAGAATTGAGA
1 CAATATCATGTATCCTAATAAGAAGACAATGT-TTATGG-TGCCTAATCCAAAAAAGAATAGGGA
* * * ** * * *
2389038 -CAGTCACGAGAA-TCGAT-TCTTGTCTTATTTATG-GTATGAACATTG-TTTTAT-AGGAAAAA
64 TTAGT-ATGAGAATTC-ATGT-TTGTCTTATTTAAGAG-ACAAACTTTGATTCTATCA--AAAAC
* * * * *
2389097 AG-GCAAAGAAAAGATT-CTAATGCAAAAG-AATATCAT
123 AGTG-GAAGAAAAGTTTCCT--TGCGACAGCAA-AGCAT
* * * * * * * *
2389133 CAATATCATTTATCCTAATGAGGAGA-ATACGCTTATAGTGCCTAAT-CACAAAATGAAT-GAAG
1 CAATATCATGTATCCTAATAAGAAGACA-ATGTTTATGGTGCCTAATCCA-AAAAAGAATAG-GG
* * ** * * *
2389195 ATCATTACT-AG-ATTCCGCGTTTATCTTATTT--GAGGCATGAA-TCTAGACTT-TA--AAAAA
63 ATTAGTA-TGAGAATT-CATGTTTGTCTTATTTAAGAGACA--AACT-TTGA-TTCTATCAAAAA
* * *
2389252 TTTAGTGGGAA-AAAAGCCTTT-CTTGCAAAATG-AAAGCAT
122 --CAGT-GGAAGAAAAG--TTTCCTTGCGACA-GCAAAGCAT
* * * ** *
2389291 CAATA-CGATGTATCCTAA-AGAGAAGACAATGTTTATGTTGCCTTATGCTGAAAAGAATGGGGA
1 CAATATC-ATGTATCCTAATA-AGAAGACAATGTTTATGGTGCCTAATCCAAAAAAGAATAGGGA
* * * *
2389354 TTAGTATGAGTATTCATCTTTGCCATATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGA
64 TTAGTATGAGAATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGA
* * * *
2389419 AGGAAAAGTATTTCTTACG-CACCAAAGAAT
129 A-GAAAAGT-TTCCTTGCGACAGCAAAGCAT
* * * * * * ****
2389449 CAATTTCATGTGTCCTAAT--GAACG-GAATGTGTTTTGGCT-CCGATTCTTGTAAAGAAT-GGA
1 CAATATCATGTATCCTAATAAGAA-GACAATGT-TTATGG-TGCCTAATCCAAAAAAGAATAGG-
* * * * * ** *
2389509 GATT-GTTACGAGAA-ACAATGCTTGTCATCA-TTAAGGGATGAACTTTGATT-TA-AAGGAAAA
62 GATTAG-TATGAGAATTC-ATGTTTGTC-TTATTTAAGAGACAAACTTTGATTCTATCA--AAAA
* ** * * * *
2389569 TAG-GGCAAAGAAAAGATTTCCAAGCAAAAGAAAATCAT
122 CAGTGG--AAGAAAAG-TTTCCTTGCGACAGCAAAGCAT
* ** * * * * * *
2389607 CAATATCATTTATCCTAACGAGGAGA-ATGTGTTTATAGTTCCTAAT-CACAAAATGAAT-GAAG
1 CAATATCATGTATCCTAATAAGAAGACA-ATGTTTATGGTGCCTAATCCA-AAAAAGAATAG-GG
* * * * * *
2389669 ATCATTACT-AG-ATTCCACGTTTGTCTCATTCAAG-GCACAAAGC-TAGACTT-TA--AAAAAT
63 ATTAGTA-TGAGAATT-CATGTTTGTCTTATTTAAGAG-ACAAA-CTTTGA-TTCTATCAAAAA-
* *
2389727 TTAGTGGGAA-AAAAGCCTTT-CTTGCGAAATG-AAAGCAT
122 -CAGT-GGAAGAAAAG--TTTCCTTGCGACA-GCAAAGCAT
* * *
2389765 CAATA-CGATGTATCCTAA-AGAGAAGACAATGATTATGGTGCCTAATCTAGAAAAGAATA-GGA
1 CAATATC-ATGTATCCTAATA-AGAAGACAATGTTTATGGTGCCTAATCCAAAAAAGAATAGGGA
* * * * * *
2389827 TTAGTAAGAGTATTCATGTTTCTCATATTTAAGAGGCAAACTTTGATTCTATCAAAAAAAGTGGA
64 TTAGTATGAGAATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGA
* *
2389892 AGGAAAAGTTTTTCTTGCGATC-CCAAAGCAT
129 A-GAAAAG-TTTCCTTGCGA-CAGCAAAGCAT
* * * ** * * * * * *
2389923 CAATTTCATGTTTGCTAATAA-AGAGATTATGCTT-TGGCTTCAC-AA-ACATGAAAAGAACAGA
1 CAATATCATGTATCCTAATAAGA-AGACAATGTTTATGG-TGC-CTAATCCA-AAAAAGAATAGG
* * * * * ** * *** *
2389984 GA-CAGTTATGAGAA-TCGACGCTTGTCTTATTGAAGGGATGAACTTTGATTTTAAGGAAAATAG
62 GATTAG-TATGAGAATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAG
* * * * * *
2390047 TGCGAAGAAAAGATTCCCATGCAAAAGAAAATCAT
125 TG-GAAGAAAAG-TTTCCTTGCGACAGCAAAGCAT
* ** * * * * * **
2390082 CAATATCATTTATCCTAATGGGGAGA-ATATGTTTATTGTGCCTAAT-CACGACATGAATAAAGA
1 CAATATCATGTATCCTAATAAGAAGACA-ATGTTTATGGTGCCTAATCCA-AAAAAGAATAGGGA
** * * * * * * * *
2390145 CCATTACTG-GAATCCAAGTTTATCTCATTTGAAG-CACGAACTTAGACTT-TA-CAAAAA-ATT
64 TTAGTA-TGAGAATTCATGTTTGTCTTATTT-AAGAGACAAACTTTGA-TTCTATCAAAAACA--
*
2390205 GTGGGAA-AAAAGCCTTT-CTTGCGAAAAG-AAAGCAT
124 GT-GGAAGAAAAG--TTTCCTTGCG-ACAGCAAAGCAT
* * * * *
2390240 CAATATGATGTATCCTAA-AGAGAAGACAATGATTATGGTGCCTCATCTAGAAAAGAAT-GGGAA
1 CAATATCATGTATCCTAATA-AGAAGACAATGTTTATGGTGCCTAATCCAAAAAAGAATAGGG-A
* * ** * *
2390303 TTAGTATGAGTATTCATGTTTCTAATATTTGAGAGACAAACTTTGATTCTATCAAAAACGGTGGA
64 TTAGTATGAGAATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGA
* ** **
2390368 AGGAAAAGTTTTTCTTGCGACCCCGTAGCAT
129 A-GAAAAG-TTTCCTTGCGACAGCAAAGCAT
* * * * *** *
2390399 CAATTTCATGTATCCTAAT-A-AAGAGAATGTGTTTTGGCTTCGC-AATCGTGAAAAGAATAGAG
1 CAATATCATGTATCCTAATAAGAAGACAATGT-TTATGG-TGC-CTAATCCAAAAAAGAATAGGG
* * * * * * * *** *
2390461 A-CATTATGAGAATTGATGCTTGTCTTATTTAAGGGACGAACTTTGATTTTAAGGAAAACACTGC
63 ATTAGTATGAGAATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTG-
* * * * * *
2390525 GAAGAAAAGATTCCAATGCAAAAGAAAATCAT
127 GAAGAAAAGTTTCC-TTGCGACAGCAAAGCAT
* * * * *
2390557 CAATATCAAT-TATCCTAAT--GAGGAGAATCCATTTATAGTGCCTAAT-CACAAAATGAAT-GA
1 CAATATC-ATGTATCCTAATAAGAAGACAAT--GTTTATGGTGCCTAATCCA-AAAAAGAATAG-
* * * * ** * * * * * *
2390617 AGATCAGTATTAGAATCCACATTTGTCTCATTT--GAGGCATGAAC-CT-ATACTTTAAAAAATT
61 GGATTAGTATGAGAATTCATGTTTGTCTTATTTAAGAGACA--AACTTTGATTCTATCAAAAA--
** * *
2390678 TTGTGGGAA-AATAGACTTT-CTTGCGAAATG-AAAGCAT
122 CAGT-GGAAGAA-A-AGTTTCCTTGCGACA-GCAAAGCAT
* * * ** *
2390715 CAATA-CGATGTATCCTAA-AGAGAAGACAATGTTTATGCTGCCTTATGCTGAAAAGAATGGGGA
1 CAATATC-ATGTATCCTAATA-AGAAGACAATGTTTATGGTGCCTAATCCAAAAAAGAATAGGGA
* * *
2390778 TTAGTATGAGTATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTCTACCAAAAAC-GATGG
64 TTAGTATGAGAATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAG-TGG
* * *
2390842 AAGGAAAAGTTTTTCTTGCGACAACAAAGAAT
128 AA-GAAAAG-TTTCCTTGCGACAGCAAAGCAT
*
2390874 CAATTTCATGTATCCTAAT
1 CAATATCATGTATCCTAAT
2390893 GAAGGGAATG
Statistics
Matches: 1689, Mismatches: 479, Indels: 447
0.65 0.18 0.17
Matches are distributed among these distances:
155 1 0.00
156 38 0.02
157 302 0.18
158 730 0.43
159 519 0.31
160 94 0.06
161 5 0.00
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.30
Consensus pattern (157 bp):
CAATATCATGTATCCTAATAAGAAGACAATGTTTATGGTGCCTAATCCAAAAAAGAATAGGGATT
AGTATGAGAATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAG
AAAAGTTTCCTTGCGACAGCAAAGCAT
Found at i:2389399 original size:949 final size:946
Alignment explanation
Indices: 2387403--2390912 Score: 4325
Period size: 949 Copynumber: 3.7 Consensus size: 946
2387393 TGAGCTTTCA
** *
2387403 TAAAGAGAAGACTGTGTTTA-GGTGCCTTATCCTGAAAAGAAT-GGGAGTTAGTATGAGTATCCA
1 TAAAGAGAAGACAATGTTTATGGTGCCTTAT-CTGAAAAGAATGGGGA-TTAGTATGAGTATTCA
** * * * *
2387466 TGTTTAACTTATTTTAGAGTCAAACTTTTATTCTATCAAAAA-AGGTGGAAGGAAAAGTTTTTCT
64 TGTTTGCCATATTTAAGAGACAAACTTTGATTCTATCAAAAACA-GTGGAAGGAAAAGTTTTTCT
* * * * *
2387530 TGTGACATCAAAGCATCAATTTCATGTTTCCTAATGAAGGGAATGTG-TTTGGCTTCACAATCTT
128 TGCGAC-CCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCGT
** * ** * *
2387594 GAAAAGAACTGACAGAGTTATGAGAATCGATGCTTGTCTTTTTTAAGAGATGAACTTTGATTTAA
192 GAAAAGAAAGGAGATTGTTACGAGAATCGATGCTTGTCTTCTTTAAGAGATGAACTTTGATTTAA
* * * *
2387659 AGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAAAAAATCATCGATATCATTTATCGTAATG
257 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATG
* * *
2387724 AGGAGAATGCATTTAGAGTGCCTAATCACAAATTGAATAAAGATCGTTACTAGAATCCACATTTG
322 AGGAGAATGCATTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCACATTTG
* * * *
2387789 TCTCATTTGAGGTACGAACCTAGATTTTAAAAAATTTGGTGGGAAAAAAGCCTTTCTTGTGAAAT
387 TCTCATTTGAAGCACGAACCTAGACTTTAAAAAATTTGGTGGGAAAAAAGCCTTTCTTGCGAAAT
* * * ** * *
2387854 GAAAGCATCAATACGATGTATTGATTCAGTGCAAGAGAAGA-ATATGTATATATTGCCTTATCCT
452 GAAAGCATCAATACGATG---T-A-TC-CT-AAAGAGAAGACA-ATGTTTATGGTGCCTAATCCA
*
2387918 GAAAAGAAT-GGAGATTAGTATGAGTATTCATGTTTGTCATATTTAAGACACAAACTTTGATTCT
509 GAAAAGAATAGG-GATTAGTATGAGTATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTCT
* *
2387982 ATCAAAAATGGTGGAAGGAAAAGTTTTTCTTACG-CACCAAAGAATCAATTTCATGTATCCTAAT
573 ATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGAATCAATTTCATGTATCCTAAT
* * * * * **
2388046 GAAGGGAATATGTTTTGGC-TC-TGATTCTCGTAAAGAATGGAGATTGTTACGAGAAAT-GATGC
638 GAAGAGAATATGTTTTGGCTTCAT-AATCTTGAAAAGAATAGAGACAGTTACGAG-AATCGATGC
* * * *
2388108 TTGTCATCTTTAAGGGATAAACATTGATTTAAGGGAAAATAGGCTAAAGAAAAGATT-TCCATGC
701 TTGTCTTATTTAAGGGATGAACATTGTTTTAA-GGAAAATAGGC-AAAGAAAAGATTCT-CATGC
* *
2388172 AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATAGGTTTATAGTGTCTAATCACAAA
763 AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATACGTTTATAGTGCCTAATCACAAA
* * *
2388237 A-GAATGAAGATCAGTACTAGAATCCAAGTTTGTCTCATTTTAGGCATGAACTTAGACTTTACAA
828 ATGAATGAAGATCATTACTAGAATCCAAGTTTATCTCATTTGAGGCATGAACTTAGACTTTAC-A
* * * *
2388301 AAAATGGTAGGAAAAAAACCTTTCTTGTGAAACA-AAAGC-TGCAATATGATGTATCC
892 AAAATTGTGGGAAAAAAGCCTTTCTTG-CAAA-AGAAAGCAT-CAATATGATGTATCC
* ** * *
2388357 TAAAGAGAAGACAATGTTTATGGTGCCTAATTCAAAAAAGAATCGGGATTAATATGAGTATTCAT
1 TAAAGAGAAGACAATGTTTATGGTGCCTTA-TCTGAAAAGAATGGGGATTAGTATGAGTATTCAT
* * * *
2388422 GTTTGTC-TAATTTAAGAGATAAACTTTGATTCTATCAAAAACAGTGGAAGGAAAAGTGTCTCTT
65 GTTTGCCAT-ATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAGGAAAAGTTTTTCTT
* * *
2388486 GCGACCGCAAAGCATCAATTTCATGTATCCTAGTGAAGGGAATGTG-TTTGTC-TCCCAATC-TC
129 GCGACC-CAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCGTG
* *
2388548 ATAAAGAAAGGAGATTGTTACGAGAATTGATGCTTGTCTTCTTTAAGAGATGAACTTTGATTTTA
193 A-AAAGAAAGGAGATTGTTACGAGAATCGATGCTTGTCTTCTTTAAGAGATGAACTTTGATTTAA
** * *
2388613 AGGAAAATAGTACAAAGAAAAGA-TTCCAGTGCAAAAGAAAATCATCAATATCCTTTATCCTAAA
257 AGGAAAATAGGGCAAAGAAAAGATTTCCA-TGCAAAAGAAAATCATCAATATCATTTATCCTAAT
*** * ** * *
2388677 GAGGAGAATATGTTTATTGTGTGTAATCACAACATGAATAAAGACCATTACTAGAATCCA-AGTT
321 GAGGAGAATGCATTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCACA-TT
* * * * *
2388741 TGTCACTTTTGAAGCACGAACTTAGACTTTACAAAAA-CTGGTGGGAAAAAAGCCTTTTTTGCGA
385 TGTCTCATTTGAAGCACGAACCTAGACTTTA-AAAAATTTGGTGGGAAAAAAGCCTTTCTTGCGA
** * *
2388805 AACAAAAGCATCAATATGATGTATCCTAATA-AGAAGACAATGTTTATGGTGCCTAATCCAAAAA
449 AATGAAAGCATCAATACGATGTATCCTAA-AGAGAAGACAATGTTTATGGTGCCTAATCCAGAAA
*
2388869 AGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAA
513 AGAATAGGGATTAGTATGAGTATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAA
* * * *
2388934 AAACGGTGGATA-GAAAAGTTTTCCTTGCGACATCAAAGCATCAATGTCATGTATCCTAATGAAG
578 AAACGGTGGA-AGGAAAAGTTTTTCTTGCGACACCAAAGAATCAATTTCATGTATCCTAATGAAG
* * * * *
2388998 AAAATGTGTTTTGGCTTCATAATCTTGAAAAGAATTGAGACAGTCACGAGAATCGATTCTTGTCT
642 AGAATATGTTTTGGCTTCATAATCTTGAAAAGAATAGAGACAGTTACGAGAATCGATGCTTGTCT
* * * * *
2389063 TATTTATGGTATGAACATTGTTTTATAGGAAAAAAGGCAAAGAAAAGATTCTAATGCAAAAGAAT
707 TATTTAAGGGATGAACATTGTTTTA-AGGAAAATAGGCAAAGAAAAGATTCTCATGCAAAAGAAA
*
2389128 ATCATCAATATCATTTATCCTAATGAGGAGAATACGCTTATAGTGCCTAATCACAAAATGAATGA
771 ATCATCAATATCATTTATCCTAATGAGGAGAATACGTTTATAGTGCCTAATCACAAAATGAATGA
* ** *
2389193 AGATCATTACTAGATTCCGCGTTTATCTTATTTGAGGCATGAA-TCTAGACTTTA-AAAAATTTA
836 AGATCATTACTAGAATCCAAGTTTATCTCATTTGAGGCATGAACT-TAGACTTTACAAAAA-TT-
*
2389256 GTGGGAAAAAAGCCTTTCTTGCAAAATGAAAGCATCAATACGATGTATCC
898 GTGGGAAAAAAGCCTTTCTTGCAAAA-GAAAGCATCAATATGATGTATCC
*
2389306 TAAAGAGAAGACAATGTTTATGTTGCCTTATGCTGAAAAGAATGGGGATTAGTATGAGTATTCAT
1 TAAAGAGAAGACAATGTTTATGGTGCCTTAT-CTGAAAAGAATGGGGATTAGTATGAGTATTCAT
* * *
2389371 CTTTGCCATATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAGGAAAAGTATTTCTTA
65 GTTTGCCATATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAGGAAAAGTTTTTCTTG
* * * * * * *
2389436 CG-CACCAAAGAATCAATTTCATGTGTCCTAATGAACGGAATGTGTTTTGGC-TCCGATTCTTGT
130 CGAC-CCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCGTGA
* * * * * *
2389499 AAAGAATGGAGATTGTTACGAGAAACAATGCTTGTCATCATTAAGGGATGAACTTTGATTTAAAG
194 AAAGAAAGGAGATTGTTACGAGAATCGATGCTTGTCTTCTTTAAGAGATGAACTTTGATTTAAAG
* *
2389564 GAAAATAGGGCAAAGAAAAGATTTCCAAGCAAAAGAAAATCATCAATATCATTTATCCTAACGAG
259 GAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAG
** * * * *
2389629 GAGAATGTGTTTATAGTTCCTAATCACAAAATGAATGAAGATCATTACTAGATTCCACGTTTGTC
324 GAGAATGCATTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCACATTTGTC
* * * *
2389694 TCA-TTCAAGGCACAAAGCTAGACTTTAAAAAATTTAGTGGGAAAAAAGCCTTTCTTGCGAAATG
389 TCATTTGAA-GCACGAACCTAGACTTTAAAAAATTTGGTGGGAAAAAAGCCTTTCTTGCGAAATG
* *
2389758 AAAGCATCAATACGATGTATCCTAAAGAGAAGACAATGATTATGGTGCCTAATCTAGAAAAGAAT
453 AAAGCATCAATACGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTAATCCAGAAAAGAAT
* * * **
2389823 A-GGATTAGTAAGAGTATTCATGTTTCTCATATTTAAGAGGCAAACTTTGATTCTATCAAAAAAA
518 AGGGATTAGTATGAGTATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACG
* * * * *
2389887 GTGGAAGGAAAAGTTTTTCTTGCGATC-CCAAAGCATCAATTTCATGTTTGCTAATAAAGAGATT
583 GTGGAAGGAAAAGTTTTTCTTGCGA-CACCAAAGAATCAATTTCATGTATCCTAATGAAGAGAAT
* * * * * * * *
2389951 ATGCTTTGGCTTCACAAACATGAAAAGAACAGAGACAGTTATGAGAATCGACGCTTGTCTTATTG
647 ATGTTTTGGCTTCATAATCTTGAAAAGAATAGAGACAGTTACGAGAATCGATGCTTGTCTTATTT
* * *
2390016 AAGGGATGAACTTTGATTTTAAGGAAAATAGTGCGAAGAAAAGATTCCCATGCAAAAGAAAATCA
712 AAGGGATGAACATTG-TTTTAAGGAAAATAG-GCAAAGAAAAGATTCTCATGCAAAAGAAAATCA
* * * * * * *
2390081 TCAATATCATTTATCCTAATGGGGAGAATATGTTTATTGTGCCTAATCACGACATGAATAAAGAC
775 TCAATATCATTTATCCTAATGAGGAGAATACGTTTATAGTGCCTAATCACAAAATGAATGAAGAT
* * *
2390146 CATTACTGGAATCCAAGTTTATCTCATTTGAAGCACGAACTTAGACTTTACAAAAAATTGTGGGA
840 CATTACTAGAATCCAAGTTTATCTCATTTGAGGCATGAACTTAGACTTTAC-AAAAATTGTGGGA
2390211 AAAAAGCCTTTCTTGCGAAAAGAAAGCATCAATATGATGTATCC
904 AAAAAGCCTTTCTTGC-AAAAGAAAGCATCAATATGATGTATCC
* * *
2390255 TAAAGAGAAGACAATGATTATGGTGCCTCATCTAGAAAAGAATGGGAATTAGTATGAGTATTCAT
1 TAAAGAGAAGACAATGTTTATGGTGCCTTATCT-GAAAAGAATGGGGATTAGTATGAGTATTCAT
* * *
2390320 GTTT-CTAATATTTGAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTT
65 GTTTGC-CATATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAGGAAAAGTTTTTCTT
** * * *
2390384 GCGACCCCGTAGCATCAATTTCATGTATCCTAATAAAGAGAATGTGTTTTGGCTTCGCAATCGTG
129 GCGA-CCCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCGTG
** * * * * * *
2390449 AAAAGAATA-GAGA-CATTATGAGAATTGATGCTTGTCTTATTTAAGGGACGAACTTTGATTTTA
193 AAAAGAA-AGGAGATTGTTACGAGAATCGATGCTTGTCTTCTTTAAGAGATGAACTTTGATTTAA
* ** * *
2390512 AGGAAAACACTGCGAAGAAAAGA-TTCCAATGCAAAAGAAAATCATCAATATCAATTATCCTAAT
257 AGGAAAATAGGGCAAAGAAAAGATTTCC-ATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
* * * *
2390576 GAGGAGAATCCATTTATAGTGCCTAATCACAAAATGAATGAAGATCAGTATTAGAATCCACATTT
321 GAGGAGAATGCATTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCACATTT
* * * * * *
2390641 GTCTCATTTGAGGCATGAACCTATACTTTAAAAAATTTTGTGGGAAAATAGACTTTCTTGCGAAA
386 GTCTCATTTGAAGCACGAACCTAGACTTTAAAAAATTTGGTGGGAAAAAAGCCTTTCTTGCGAAA
* * * *
2390706 TGAAAGCATCAATACGATGTATCCTAAAGAGAAGACAATGTTTATGCTGCCTTATGCTGAAAAGA
451 TGAAAGCATCAATACGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTAATCCAGAAAAGA
* *
2390771 ATGGGGATTAGTATGAGTATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTCTACCAAAAA
516 ATAGGGATTAGTATGAGTATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAA
* * *
2390836 CGATGGAAGGAAAAGTTTTTCTTGCGACAACAAAGAATCAATTTCATGTATCCTAATGAAGGGAA
581 CGGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGAATCAATTTCATGTATCCTAATGAAGAGAA
*
2390901 TGTGTTTTGGCT
646 TATGTTTTGGCT
2390913 CCGGTTCTTA
Statistics
Matches: 2198, Mismatches: 303, Indels: 113
0.84 0.12 0.04
Matches are distributed among these distances:
947 117 0.05
948 368 0.17
949 849 0.39
950 320 0.15
951 147 0.07
953 7 0.00
954 249 0.11
955 135 0.06
956 6 0.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (946 bp):
TAAAGAGAAGACAATGTTTATGGTGCCTTATCTGAAAAGAATGGGGATTAGTATGAGTATTCATG
TTTGCCATATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAGGAAAAGTTTTTCTTGC
GACCCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCGTGAAA
AGAAAGGAGATTGTTACGAGAATCGATGCTTGTCTTCTTTAAGAGATGAACTTTGATTTAAAGGA
AAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGA
GAATGCATTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCACATTTGTCTC
ATTTGAAGCACGAACCTAGACTTTAAAAAATTTGGTGGGAAAAAAGCCTTTCTTGCGAAATGAAA
GCATCAATACGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTAATCCAGAAAAGAATAGG
GATTAGTATGAGTATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTG
GAAGGAAAAGTTTTTCTTGCGACACCAAAGAATCAATTTCATGTATCCTAATGAAGAGAATATGT
TTTGGCTTCATAATCTTGAAAAGAATAGAGACAGTTACGAGAATCGATGCTTGTCTTATTTAAGG
GATGAACATTGTTTTAAGGAAAATAGGCAAAGAAAAGATTCTCATGCAAAAGAAAATCATCAATA
TCATTTATCCTAATGAGGAGAATACGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC
TAGAATCCAAGTTTATCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGTGGGAAAAAAGC
CTTTCTTGCAAAAGAAAGCATCAATATGATGTATCC
Found at i:2390956 original size:475 final size:475
Alignment explanation
Indices: 2387403--2390956 Score: 4195
Period size: 475 Copynumber: 7.5 Consensus size: 475
2387393 TGAGCTTTCA
** *
2387403 TAAAGAGAAGACTGTGTTTA-GGTGCCTTATCCTGAAAAGAAT-GGGAGTTAGTATGAGTATCCA
1 TAAAGAGAAGACAATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGA-TTAGTATGAGTATTCA
** * * * * * *
2387466 TGTTTAACTTATTTTAGAGTCAAACTTTTATTCTATCAAAAAAGGTGGAAGGAAAAGTTTTTCTT
65 TGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAAGGAAAAGTTTTTCTT
* * *
2387531 GTGACATCAAAGCATCAATTTCATGTTTCCTAATGAAGGGAATGTG-TTTGGCTTCAC-AATCTT
130 GCGACACCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGTGTTTTGGC-TC-CGAATCTT
* * * *
2387594 GAAAAGAACTGACAGA--GTTATGAGAATCGATGCTTGTCTTTTTTAAGAGATGAACTTTGATTT
193 GAAAAGAA-TG-GAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTT
* * * * *
2387657 AAAGGAAAATAGGGCAAAGAAAAGATTTTC-ATGCAAAAAAAAATCATCGATATCATTTATCGTA
256 TAAGGAAAATAGGGCAAAGAAAAGA-TTCCAATGCAAAAGAAAATCATCAATATCATTTATCCTA
* * * * * *
2387721 ATGAGGAGAATGCATTTAGAGTGCCTAATCACAAATTGAATAAAGATCGTTACTAGAATCCACAT
320 ATGAGGAGAATACGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACAT
* * *
2387786 TTGTCTCATTTGAGGTACGAACCTAGATTTTAAAAAATTTGGTGGGAAAAAAGCCTTTCTTGTGA
385 TTGTCTCATTTGAGGCACGAACCTAGACTTTAAAAAATTTGGTGGGAAAAAAGCCTTTCTTGCGA
*
2387851 AATGAAAGCATCAATACGATGTATTGATTCAG
450 AATGAAAGCATCAATACGATG---T-A-TC-C
* * ** *
2387883 TGCAAGAGAAGA-ATATGTATATATTGCCTTATCCTGAAAAGAATGGAGATTAGTATGAGTATTC
1 T-AAAGAGAAGACA-ATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTC
* * *
2387947 ATGTTTGTCATATTTAAGACACAAACTTTGATTCTATCAAAAATGGTGGAAGGAAAAGTTTTTCT
64 ATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAAGGAAAAGTTTTTCT
* * * * * *
2388012 TACG-CACCAAAGAATCAATTTCATGTATCCTAATGAAGGGAATATGTTTTGGCTCTGATTCTCG
129 TGCGACACCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTCCGAATCTTG
* * * * *
2388076 TAAAGAATGGAGATTGTTACGAGAAAT-GATGCTTGTCATCTTTAAGGGATAAACATTGA-TTTA
194 AAAAGAATGGAGATTGTTACGAG-AATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA
2388139 AGGGAAAATA-GGCTAAAGAAAAGATTTCC-ATGCAAAAGAAAATCATCAATATCATTTATCCTA
258 A-GGAAAATAGGGC-AAAGAAAAGA-TTCCAATGCAAAAGAAAATCATCAATATCATTTATCCTA
* * *
2388202 ATGAGGAGAATAGGTTTATAGTGTCTAATCACAAAA-GAATGAAGATCAGTACTAGAATCCA-AG
320 ATGAGGAGAATACGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACA-
* * * * * * *
2388265 TTTGTCTCATTTTAGGCATGAACTTAGACTTTACAAAAA-ATGGTAGGAAAAAAACCTTTCTTGT
384 TTTGTCTCATTTGAGGCACGAACCTAGACTTTA-AAAAATTTGGTGGGAAAAAAGCCTTTCTTGC
** *
2388329 GAAACAAAAGC-TGCAATATGATGTATCC
448 GAAATGAAAGCAT-CAATACGATGTATCC
* * ** * *
2388357 TAAAGAGAAGACAATGTTTATGGTGCCTAATTCAAAAAAGAATCGGGATTAATATGAGTATTCAT
1 TAAAGAGAAGACAATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCAT
* * *
2388422 GTTTGTC-TAATTTAAGAGATAAACTTTGATTCTATCAAAAAC-AGTGGAAGGAAAAGTGTCTCT
66 GTTTGTCAT-ATTTAAGAGACAAACTTTGATTCTATCAAAAACGA-TGGAAGGAAAAGTTTTTCT
* * *
2388485 TGCGAC-CGCAAAGCATCAATTTCATGTATCCTAGTGAAGGGAATGTG-TTTGTCTCCCAATC-T
129 TGCGACAC-CAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTCCGAATCTT
* * * * *
2388547 CATAAAGAAAGGAGATTGTTACGAGAATTGATGCTTGTCTTCTTTAAGAGATGAACTTTGATTTT
193 GA-AAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT
** * * *
2388612 AAGGAAAATAGTACAAAGAAAAGATTCCAGTGCAAAAGAAAATCATCAATATCCTTTATCCTAAA
257 AAGGAAAATAGGGCAAAGAAAAGATTCCAATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
* * ** * * *
2388677 GAGGAGAATATGTTTATTGTGTGTAATCACAACATGAATAAAGACCATTACTAGAATCCA-AGTT
322 GAGGAGAATACGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACA-TT
* * * * * *
2388741 TGTCACTTTTGAAGCACGAACTTAGACTTTACAAAAA-CTGGTGGGAAAAAAGCCTTTTTTGCGA
386 TGTCTCATTTGAGGCACGAACCTAGACTTTA-AAAAATTTGGTGGGAAAAAAGCCTTTCTTGCGA
** *
2388805 AACAAAAGCATCAATATGATGTATCC
450 AATGAAAGCATCAATACGATGTATCC
* ** *
2388831 TAATA-AGAAGACAATGTTTATGGTGCCTAATCCAAAAAAGAATAGGGATTAGTATGAGTATTCA
1 TAA-AGAGAAGACAATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCA
* * *
2388895 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGATA-GAAAAGTTTTCCT
65 TGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGA-AGGAAAAGTTTTTCT
* * ** **
2388959 TGCGACATCAAAGCATCAATGTCATGTATCCTAATGAAGAAAATGTGTTTTGGCTTCATAATCTT
129 TGCGACACCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGTGTTTTGGC-TCCGAATCTT
* ** * * * * *
2389024 GAAAAGAATTGAGACAGTCACGAGAATCGATTCTTGTCTTATTTATGGTATGAACATTG-TTTTA
193 GAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA
* * *
2389088 TAGGAAAA-AAGGCAAAGAAAAGATTCTAATGCAAAAGAATATCATCAATATCATTTATCCTAAT
258 -AGGAAAATAGGGCAAAGAAAAGATTCCAATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
* * * *
2389152 GAGGAGAATACGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGATTCCGCGTTT
322 GAGGAGAATACGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACATTT
* * * * * *
2389217 ATCTTATTTGAGGCATGAATCTAGACTTTAAAAAATTTAGTGGGAAAAAAGCCTTTCTTGCAAAA
387 GTCTCATTTGAGGCACGAACCTAGACTTTAAAAAATTTGGTGGGAAAAAAGCCTTTCTTGCGAAA
2389282 TGAAAGCATCAATACGATGTATCC
452 TGAAAGCATCAATACGATGTATCC
* *
2389306 TAAAGAGAAGACAATGTTTATGTTGCCTTATGCTGAAAAGAATGGGGATTAGTATGAGTATTCAT
1 TAAAGAGAAGACAATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCAT
* * *
2389371 CTTTGCCATATTTAAGAGACAAACTTTGATTCTATCAAAAAC-AGTGGAAGGAAAAGTATTTCTT
66 GTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGA-TGGAAGGAAAAGTTTTTCTT
* * * * * *
2389435 ACG-CACCAAAGAATCAATTTCATGTGTCCTAATGAACGGAATGTGTTTTGGCTCCGATTCTTGT
130 GCGACACCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTCCGAATCTTGA
* * * *
2389499 AAAGAATGGAGATTGTTACGAGAAACAATGCTTGTCATCA-TTAAGGGATGAACTTTGATTTAAA
195 AAAGAATGGAGATTGTTACGAGAATCGATGCTTGTC-TTATTTAAGGGATGAACTTTGATTTTAA
*
2389563 GGAAAATAGGGCAAAGAAAAGATTTCCAA-GCAAAAGAAAATCATCAATATCATTTATCCTAACG
259 GGAAAATAGGGCAAAGAAAAGA-TTCCAATGCAAAAGAAAATCATCAATATCATTTATCCTAATG
** * * *
2389627 AGGAGAATGTGTTTATAGTTCCTAATCACAAAATGAATGAAGATCATTACTAGATTCCACGTTTG
323 AGGAGAATACGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACATTTG
** * * *
2389692 TCTCATTCAAGGCACAAAGCTAGACTTTAAAAAATTTAGTGGGAAAAAAGCCTTTCTTGCGAAAT
388 TCTCATTTGAGGCACGAACCTAGACTTTAAAAAATTTGGTGGGAAAAAAGCCTTTCTTGCGAAAT
2389757 GAAAGCATCAATACGATGTATCC
453 GAAAGCATCAATACGATGTATCC
* * * *
2389780 TAAAGAGAAGACAATGATTATGGTGCCTAAT-CTAGAAAAGAAT-AGGATTAGTAAGAGTATTCA
1 TAAAGAGAAGACAATGTTTATGGTGCCTTATCCT-GAAAAGAATGGGGATTAGTATGAGTATTCA
* * *
2389843 TGTTTCTCATATTTAAGAGGCAAACTTTGATTCTATCAAAAA-AAGTGGAAGGAAAAGTTTTTCT
65 TGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGA-TGGAAGGAAAAGTTTTTCT
* * * * * * * *
2389907 TGCGATC-CCAAAGCATCAATTTCATGTTTGCTAATAAAGAGATTATGCTTTGGCTTCAC-AAAC
129 TGCGA-CACCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGTGTTTTGGC-TC-CGAATC
* ** ** * * *
2389970 ATGAAAAGAACAGAGACAGTTATGAGAATCGACGCTTGTCTTATTGAAGGGATGAACTTTGATTT
191 TTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTT
* * *
2390035 TAAGGAAAATAGTGCGAAGAAAAGATTCCCATGCAAAAGAAAATCATCAATATCATTTATCCTAA
256 TAAGGAAAATAGGGCAAAGAAAAGATTCCAATGCAAAAGAAAATCATCAATATCATTTATCCTAA
* * * * * * * *
2390100 TGGGGAGAATATGTTTATTGTGCCTAATCACGACATGAATAAAGACCATTACTGGAATCCA-AGT
321 TGAGGAGAATACGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACA-T
* * * *
2390164 TTATCTCATTTGAAGCACGAACTTAGACTTTACAAAAAATT-GTGGGAAAAAAGCCTTTCTTGCG
385 TTGTCTCATTTGAGGCACGAACCTAGACTTTA-AAAAATTTGGTGGGAAAAAAGCCTTTCTTGCG
* *
2390228 AAAAGAAAGCATCAATATGATGTATCC
449 AAATGAAAGCATCAATACGATGTATCC
* * *
2390255 TAAAGAGAAGACAATGATTATGGTGCCTCAT-CTAGAAAAGAATGGGAATTAGTATGAGTATTCA
1 TAAAGAGAAGACAATGTTTATGGTGCCTTATCCT-GAAAAGAATGGGGATTAGTATGAGTATTCA
* * * *
2390319 TGTTTCTAATATTTGAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTT
65 TGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAAGGAAAAGTTTTTCTT
* ** * * * *
2390384 GCGACCCCGTAGCATCAATTTCATGTATCCTAATAAAGAGAATGTGTTTTGGCTTCGCAATCGTG
130 GCGACACCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTCCG-AATCTTG
* ** * * *
2390449 AAAAGAATAGAGA-CATTATGAGAATTGATGCTTGTCTTATTTAAGGGACGAACTTTGATTTTAA
194 AAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAA
* ** * *
2390513 GGAAAACACTGCGAAGAAAAGATTCCAATGCAAAAGAAAATCATCAATATCAATTATCCTAATGA
259 GGAAAATAGGGCAAAGAAAAGATTCCAATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA
* * * *
2390578 GGAGAATCCATTTATAGTGCCTAATCACAAAATGAATGAAGATCAGTATTAGAATCCACATTTGT
324 GGAGAATACGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACATTTGT
* * * * *
2390643 CTCATTTGAGGCATGAACCTATACTTTAAAAAATTTTGTGGGAAAATAGACTTTCTTGCGAAATG
389 CTCATTTGAGGCACGAACCTAGACTTTAAAAAATTTGGTGGGAAAAAAGCCTTTCTTGCGAAATG
2390708 AAAGCATCAATACGATGTATCC
454 AAAGCATCAATACGATGTATCC
* *
2390730 TAAAGAGAAGACAATGTTTATGCTGCCTTATGCTGAAAAGAATGGGGATTAGTATGAGTATTCAT
1 TAAAGAGAAGACAATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCAT
*
2390795 GTTTGTCATATTTAAGAGACAAACTTTGATTCTACCAAAAACGATGGAAGGAAAAGTTTTTCTTG
66 GTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAAGGAAAAGTTTTTCTTG
* * **
2390860 CGACAACAAAGAATCAATTTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTCCGGTTCTT-AG
131 CGACACCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTCCGAATCTTGA-
* * *
2390924 AAATAATTGAGATTGTTACGAGAAACGATGCTT
195 AAAGAATGGAGATTGTTACGAGAATCGATGCTT
2390957 ATCATTGTGA
Statistics
Matches: 2641, Mismatches: 369, Indels: 133
0.84 0.12 0.04
Matches are distributed among these distances:
472 8 0.00
473 389 0.15
474 648 0.25
475 989 0.37
476 207 0.08
477 3 0.00
479 5 0.00
480 100 0.04
481 187 0.07
482 102 0.04
483 3 0.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (475 bp):
TAAAGAGAAGACAATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCAT
GTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAAGGAAAAGTTTTTCTTG
CGACACCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTCCGAATCTTGAA
AAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGG
AAAATAGGGCAAAGAAAAGATTCCAATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGG
AGAATACGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACATTTGTCT
CATTTGAGGCACGAACCTAGACTTTAAAAAATTTGGTGGGAAAAAAGCCTTTCTTGCGAAATGAA
AGCATCAATACGATGTATCC
Found at i:2391250 original size:34 final size:35
Alignment explanation
Indices: 2391212--2391278 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
2391202 CCTTACAACA
2391212 CTATC-TTTC-AAGGCTAAGATAGAAACCTCTCTCT
1 CTATCTTTTCAAAGGCTAAGATAG-AACCTCTCTCT
2391246 CTATCTTTTTCAAAGGCTAAGATAGAACCTCTC
1 CTATC-TTTTCAAAGGCTAAGATAGAACCTCTC
2391279 AATCACTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 5 0.17
36 12 0.40
37 13 0.43
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (35 bp):
CTATCTTTTCAAAGGCTAAGATAGAACCTCTCTCT
Done.