Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold400
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2847997
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
File 15 of 17
Found at i:2391819 original size:22 final size:22
Alignment explanation
Indices: 2391789--2391861 Score: 87
Period size: 22 Copynumber: 3.4 Consensus size: 22
2391779 GGCTCAATGT
2391789 ACAGTGATGTATCGATACATGA
1 ACAGTGATGTATCGATACATGA
* * * *
2391811 ATAGTGATGAATAG-T-GATGA
1 ACAGTGATGTATCGATACATGA
*
2391831 ACAATGATGTATCGATACATGA
1 ACAGTGATGTATCGATACATGA
2391853 ACAGTGATG
1 ACAGTGATG
2391862 AATAGTGATG
Statistics
Matches: 39, Mismatches: 10, Indels: 4
0.74 0.19 0.08
Matches are distributed among these distances:
20 14 0.36
21 2 0.05
22 23 0.59
ACGTcount: A:0.38, C:0.10, G:0.25, T:0.27
Consensus pattern (22 bp):
ACAGTGATGTATCGATACATGA
Found at i:2391822 original size:10 final size:10
Alignment explanation
Indices: 2391807--2391879 Score: 74
Period size: 10 Copynumber: 7.1 Consensus size: 10
2391797 GTATCGATAC
2391807 ATGAATAGTG
1 ATGAATAGTG
2391817 ATGAATAGTG
1 ATGAATAGTG
* *
2391827 ATGAACAATG
1 ATGAATAGTG
* * *
2391837 ATGTATCGATAC
1 ATGAATAG-T-G
*
2391849 ATGAACAGTG
1 ATGAATAGTG
2391859 ATGAATAGTG
1 ATGAATAGTG
2391869 ATGAATAGTG
1 ATGAATAGTG
2391879 A
1 A
2391880 AAATGAGATT
Statistics
Matches: 49, Mismatches: 12, Indels: 4
0.75 0.18 0.06
Matches are distributed among these distances:
10 42 0.86
11 2 0.04
12 5 0.10
ACGTcount: A:0.41, C:0.05, G:0.26, T:0.27
Consensus pattern (10 bp):
ATGAATAGTG
Found at i:2391852 original size:42 final size:42
Alignment explanation
Indices: 2391793--2391873 Score: 153
Period size: 42 Copynumber: 1.9 Consensus size: 42
2391783 CAATGTACAG
*
2391793 TGATGTATCGATACATGAATAGTGATGAATAGTGATGAACAA
1 TGATGTATCGATACATGAACAGTGATGAATAGTGATGAACAA
2391835 TGATGTATCGATACATGAACAGTGATGAATAGTGATGAA
1 TGATGTATCGATACATGAACAGTGATGAATAGTGATGAA
2391874 TAGTGAAAAT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.40, C:0.07, G:0.25, T:0.28
Consensus pattern (42 bp):
TGATGTATCGATACATGAACAGTGATGAATAGTGATGAACAA
Found at i:2391925 original size:13 final size:13
Alignment explanation
Indices: 2391907--2391931 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2391897 TGCCAATGCT
2391907 ATGTATCGATACA
1 ATGTATCGATACA
2391920 ATGTATCGATAC
1 ATGTATCGATAC
2391932 TTAGCAAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2392052 original size:21 final size:21
Alignment explanation
Indices: 2392012--2392052 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
2392002 GTCAACCTTG
*
2392012 TGTATTGATACCAATAGTATA
1 TGTATTGATACCAACAGTATA
2392033 TGTATTGATA-CAACACGTAT
1 TGTATTGATACCAACA-GTAT
2392053 TTTTACTTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.37
Consensus pattern (21 bp):
TGTATTGATACCAACAGTATA
Found at i:2393909 original size:475 final size:472
Alignment explanation
Indices: 2392258--2394284 Score: 2280
Period size: 474 Copynumber: 4.3 Consensus size: 472
2392248 CTAATAGTCA
* * * * * *
2392258 TCTTTAAGGGACGAATTTTGATTTAGAGGAAAACAGGGCAAATAAAAGATTTCCAAGCAAAAGAA
1 TCTTTAAGGGATGAACTTTGATTTA-AAGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAA
* ** * * *
2392323 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTGTAGCGCCTGATTACAAAATAAATT
65 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAATGCCTAATCACAAAATGAA-T
* ** * *
2392388 AA-GATCATTACTAGAA-TCAATATTTGTCTGTTTTGAAGCACAAACTTAGACTTTACAAAAAAT
129 AACGATCATTACTAGAATTCAA-GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAAT
* ** *
2392451 GGTGGGAAAAAGCCTTTATTGTGAAACGAAAGCATCAATGTGATGTATCCTAATA-AGAAGACAA
193 GGTGGGAAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATGATGTATCCTAA-AGAGAAGACAA
* * *
2392515 TGATTATGGTGCCTAATTTGGAAAAGAATGGGGATTAGTATGAGCATTCATGTTTGTCATATTTA
257 TGTTTATGGTGCCTAATCT-GAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCATATTTA
*
2392580 AGAGACAAACTTTGATTCTATCAAAAACGGT-AGAAGGAAAAGTTTTTCTTG-AGATC-CCAAAG
321 AGAGACAAACTTTGATTCTATCAAAAACGATGA-AAGGAAAAGTTTTTCTTGCA-A-CACCAAAG
* * * *
2392642 CATCAA-TTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCGTAGTTTTGAAAAGAATAGAG
383 CATCAATTTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTCCG-AATCTCGAAAAGAATAGAG
*
2392706 ACAGTTATAAGAATCGATGCTTGTCT
447 ACAGTTACAAGAATCGATGCTTGTCT
* * * * *
2392732 TATTTAAAGGATGAACTTTGATTTAAATGAAAATAAGGCAAAGAAATGATATT-CAAGCACAAA-
1 TCTTTAAGGGATGAACTTTGATTTAAA-GAAAATAGGGCAAAGAAAAGAT-TTCCATGCA-AAAG
** * * * *
2392795 AAAATTGTCAACATCAATTATCCTAATTAGGAGAATGTGTTTACAATGCCTAATCACAAAATGAA
63 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAATGCCTAATCACAAAATGAA
* * **
2392860 -AGAAGATCATTACTAGAATTTAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAATT
128 TA-ACGATCATTACTAGAATTCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAA
* * *
2392924 TGG-GGGAAGAAAGCCTCTCTTGCAAAACGAAAGCATCAATATGATGTATCCTAAAGGGAAGATA
192 TGGTGGGAA-AAAGCCTTTCTTGCAAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACA
* * * * *
2392988 ATGTTTGTGTTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATCCATGTTTGTCTTATTT
256 ATGTTTATGGTGCCTAAT-CTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCATATTT
* ** * * * * *
2393053 ATGAGACAAACTTTGATTCTAAAAAAAACTATGGAAGGAAAAGTTTTTCTTACGACATCAAAGCA
320 AAGAGACAAACTTTGATTCTATCAAAAACGATGAAAGGAAAAGTTTTTCTTGCAACACCAAAGCA
* * * *
2393118 TCAGTGTCATGTATCCTAATGAAGGGAATGTGTTTTGCCTTCC-AATCTTGAAAAGAATAGAGAC
385 TCAATTTCATGTATCCTAATGAAGGGAATGTGTTTTGGC-TCCGAATCTCGAAAAGAATAGAGAC
* ** *
2393182 AATTATGAGAATCGATTCTTGTCT
449 AGTTACAAGAATCGATGCTTGTCT
* * * * **
2393206 TATTTAAGGTATGAAC-ATCATTTTCAAAGAAAATA-GGCAAAGAAAAGATTTAAATGCAAAAGA
1 TCTTTAAGGGATGAACTTTGA-TTT-AAAGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
* * * * *
2393269 AAATCAACAATATCATTTATCCCAGTGAGGAGAATGTGTTTATAATGGCTAACCACAAAATGAAT
64 AAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAATGCCTAATCACAAAATGAAT
* * * * *
2393334 GACGATCATTACTAGAATTCATGTTTATCTCATTTGAGACACGAACTTAGACTTTA-AAAAATTT
129 AACGATCATTACTAGAATTCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAA-AT
* * * *
2393398 GGTGGGAAAAAGCCTTTCTTGTAAAAATGAAAGCATCAATACGATGTATCCTAAAGAGAAGACTA
193 GGTGGGAAAAAGCCTTTCTTG-CAAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACAA
** * *
2393463 TGTTTATATTGCCTTATGCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCATATTTT
257 TGTTTATGGTGCCTAAT-CTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCATATTTA
* * * * *
2393528 AGAGATAAACTTTCATTCTATCAAAAGCAATGAAAGGAAAAGTTTTTCTTGCAACACCAAAGAAT
321 AGAGACAAACTTTGATTCTATCAAAAACGATGAAAGGAAAAGTTTTTCTTGCAACACCAAAGCAT
* * * * * * * * **
2393593 CAATTTCATGTCTGCTAATGAAGGGAATATGTTTTGGGTCCGATTCTCGTAAAGATTGGAGATTG
386 CAATTTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTCCGAATCTCGAAAAGAATAGAGACAG
* *
2393658 TTACAAGAAAT-GATGCTTTTCA
451 TTACAAG-AATCGATGCTTGTCT
*
2393680 TCTTTAAGGGATGAACTTTGATTTAAAGCAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAAAA
1 TCTTTAAGGGATGAACTTTGATTTAAAG-AAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAA
** **
2393745 AATCATCAATATCATTTATAATAATGAGGAGAATGTGTTTATAATATCTAATCACAAAATGAATA
65 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAATGCCTAATCACAAAATGAATA
* * * *
2393810 ACGATCACTGCTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACTTAGATTTTACAAAAAATGG
130 ACGATCATTACTAGAATTCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAATGG
* *
2393875 TGGGAAAAAAGCCTTTCTTGCGAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGCCAATG
195 TGGG-AAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACAATG
* * * * * *
2393940 TTTATGGTGCCAAATTTGAAAAAGAATCGGGAGTAGTATGAGTATTCATTTTTGT-TTCATTTAA
259 TTTATGGTGCCTAATCTG-AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCAT-ATTTAA
* * * * * *
2394004 GAGATC-AACTTTGATTCTATCAAAAACGGTGGAAGGAAAAATATTTCTTGCGACCCCAAAGCAT
322 GAGA-CAAACTTTGATTCTATCAAAAACGATGAAAGGAAAAGTTTTTCTTGCAACACCAAAGCAT
* * *
2394068 CAATTTCATGTATCCTAATGAAGGGAATGTG-TTTGTCTCCTAATCTC-ATAAAGAA-AGGAGAT
386 CAATTTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTCCGAATCTCGA-AAAGAATA-GAGAC
* * *
2394130 TGTTACGAGAATTGATGCTTGTCT
449 AGTTACAAGAATCGATGCTTGTCT
* * * * *
2394154 TCTTTATGGGAAGAACTTTGATTTTAAGGAAAATAGTGCAAAGAAAAGATTCCCATGCAAAAGAA
1 TCTTTAAGGGATGAACTTTGA-TTTAAAGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAA
* * * * *
2394219 AATCATCAATATCATTTATTCTAATGAGGAGAATATGTTTACT-GTTCCTAATCACAACATGAAT
65 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA-TAATGCCTAATCACAAAATGAAT
2394283 AA
129 AA
2394285 AGACCAATAC
Statistics
Matches: 1307, Mismatches: 209, Indels: 74
0.82 0.13 0.05
Matches are distributed among these distances:
472 10 0.01
473 158 0.12
474 756 0.58
475 361 0.28
476 22 0.02
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.31
Consensus pattern (472 bp):
TCTTTAAGGGATGAACTTTGATTTAAAGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
ATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAATGCCTAATCACAAAATGAATAA
CGATCATTACTAGAATTCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAATGGT
GGGAAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACAATGTT
TATGGTGCCTAATCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCATATTTAAGAGA
CAAACTTTGATTCTATCAAAAACGATGAAAGGAAAAGTTTTTCTTGCAACACCAAAGCATCAATT
TCATGTATCCTAATGAAGGGAATGTGTTTTGGCTCCGAATCTCGAAAAGAATAGAGACAGTTACA
AGAATCGATGCTTGTCT
Found at i:2395780 original size:15 final size:15
Alignment explanation
Indices: 2395759--2395799 Score: 64
Period size: 16 Copynumber: 2.7 Consensus size: 15
2395749 AAAAGTAAAC
2395759 ACAAAAAAAAAACAAA
1 ACAAAAAAAAAAC-AA
*
2395775 ACAAAAAAAAAACAC
1 ACAAAAAAAAAACAA
2395790 ACAAAAAAAA
1 ACAAAAAAAA
2395800 GTGCAAAGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 11 0.46
16 13 0.54
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (15 bp):
ACAAAAAAAAAACAA
Found at i:2397156 original size:61 final size:61
Alignment explanation
Indices: 2397081--2397254 Score: 287
Period size: 61 Copynumber: 2.9 Consensus size: 61
2397071 ATACCTTCTT
*
2397081 AAAGTCCACGACTCAGTGGCAATCTCTTC-TCAAAGTCCACGACTCAGTGGCATCTCTTTCC
1 AAAGTCCACGACTCAGTGGC-ATCTTTTCTTCAAAGTCCACGACTCAGTGGCATCTCTTTCC
*
2397142 AAAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGTCCACGACACAGTGGCATCTCTTTCC
1 AAAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGTCCACGACTCAGTGGCATCTCTTTCC
* * *
2397203 AAAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGCCCACAACTCTGTGGCA
1 AAAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGTCCACGACTCAGTGGCA
2397255 CCTTTTTCTT
Statistics
Matches: 106, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
60 7 0.07
61 99 0.93
ACGTcount: A:0.25, C:0.32, G:0.17, T:0.26
Consensus pattern (61 bp):
AAAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGTCCACGACTCAGTGGCATCTCTTTCC
Found at i:2397260 original size:31 final size:31
Alignment explanation
Indices: 2397076--2397260 Score: 247
Period size: 31 Copynumber: 6.1 Consensus size: 31
2397066 TTCAAATACC
*
2397076 TTCTT-AAAGTCCACGACTCAGTGGCAATCTC
1 TTCTTCAAAGTCCACGACTCAGTGGC-ATCTT
2397107 TTC-TCAAAGTCCACGACTCAGTGGCATCTCT
1 TTCTTCAAAGTCCACGACTCAGTGGCATCT-T
2397138 TTC--CAAAGTCCACGACTCAGTGGCATCTT
1 TTCTTCAAAGTCCACGACTCAGTGGCATCTT
*
2397167 TTCTTCAAAGTCCACGACACAGTGGCATCTCT
1 TTCTTCAAAGTCCACGACTCAGTGGCATCT-T
2397199 TTC--CAAAGTCCACGACTCAGTGGCATCTT
1 TTCTTCAAAGTCCACGACTCAGTGGCATCTT
* * * *
2397228 TTCTTCAAAGCCCACAACTCTGTGGCACCTT
1 TTCTTCAAAGTCCACGACTCAGTGGCATCTT
2397259 TT
1 TT
2397261 TCTTTTCTTC
Statistics
Matches: 140, Mismatches: 7, Indels: 14
0.87 0.04 0.09
Matches are distributed among these distances:
29 8 0.06
30 54 0.39
31 74 0.53
32 4 0.03
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.29
Consensus pattern (31 bp):
TTCTTCAAAGTCCACGACTCAGTGGCATCTT
Found at i:2397274 original size:37 final size:37
Alignment explanation
Indices: 2397224--2397327 Score: 169
Period size: 37 Copynumber: 2.9 Consensus size: 37
2397214 CTCAGTGGCA
2397224 TCTTTTCTTCAAAGCCCACAACTCTGTGGCACCTTTT
1 TCTTTTCTTCAAAGCCCACAACTCTGTGGCACCTTTT
2397261 TCTTTTCTTCAAAGCCCACAACTCTGTGGCACCTTTT
1 TCTTTTCTTCAAAGCCCACAACTCTGTGGCACCTTTT
* *
2397298 TC--TT-TTCAAAGCCCACCACTCCGTGGCACC
1 TCTTTTCTTCAAAGCCCACAACTCTGTGGCACC
2397328 AGTTTCCCTT
Statistics
Matches: 65, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
34 24 0.37
35 2 0.03
37 39 0.60
ACGTcount: A:0.19, C:0.36, G:0.12, T:0.34
Consensus pattern (37 bp):
TCTTTTCTTCAAAGCCCACAACTCTGTGGCACCTTTT
Found at i:2397311 original size:34 final size:34
Alignment explanation
Indices: 2397196--2397327 Score: 153
Period size: 37 Copynumber: 3.9 Consensus size: 34
2397186 CAGTGGCATC
* * * * *
2397196 TCTTTCCAAAGTCCACGACTCAGTGGCATC-TTT
1 TCTTTTCAAAGCCCACAACTCTGTGGCACCTTTT
2397229 TC--TTCAAAGCCCACAACTCTGTGGCACCTTTT
1 TCTTTTCAAAGCCCACAACTCTGTGGCACCTTTT
2397261 TCTTTTCTTCAAAGCCCACAACTCTGTGGCACCTTTT
1 TC--TT-TTCAAAGCCCACAACTCTGTGGCACCTTTT
* *
2397298 TCTTTTCAAAGCCCACCACTCCGTGGCACC
1 TCTTTTCAAAGCCCACAACTCTGTGGCACC
2397328 AGTTTCCCTT
Statistics
Matches: 86, Mismatches: 7, Indels: 11
0.83 0.07 0.11
Matches are distributed among these distances:
31 21 0.24
32 5 0.06
33 2 0.02
34 24 0.28
35 2 0.02
37 32 0.37
ACGTcount: A:0.20, C:0.35, G:0.13, T:0.32
Consensus pattern (34 bp):
TCTTTTCAAAGCCCACAACTCTGTGGCACCTTTT
Found at i:2397404 original size:33 final size:33
Alignment explanation
Indices: 2397366--2397432 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
2397356 GGCACGCCCT
2397366 TCTAAAGCCCACACAAGTCGGTGGCAACCATTC
1 TCTAAAGCCCACACAAGTCGGTGGCAACCATTC
*
2397399 TCTAAAGCCCACACAAGTCGGTGGCAACCCTTC
1 TCTAAAGCCCACACAAGTCGGTGGCAACCATTC
2397432 T
1 T
2397433 AAGCCCAATA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.28, C:0.34, G:0.18, T:0.19
Consensus pattern (33 bp):
TCTAAAGCCCACACAAGTCGGTGGCAACCATTC
Found at i:2397542 original size:43 final size:44
Alignment explanation
Indices: 2397481--2397903 Score: 368
Period size: 43 Copynumber: 8.9 Consensus size: 44
2397471 CCTTTTCCAT
* * * *
2397481 CTTTAAGACCGATGTCGCTGGCCTTGAATCAGCACATTGGCA-C
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC
*
2397524 CTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCA-C
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC
* *
2397567 CTTTAAG-CCTAATATCACTGGCCTTGAATTAGCATATTGGCACC
1 CTTTAAGTCC-AATATCGCTGGCCTTGAATCAGCATATTGGCACC
*
2397611 TTTGTCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCA-C
1 -----CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC
*
2397659 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGTCACC
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC
* * *
2397703 TTTGTCATATTTTAAGTCCAATGTTGCTGGCCTTGAATCAGCACATTGGCACCTTC
1 -----C----TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA-C--C
*
2397759 ATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTC
1 --CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGC-AC-----C
* * *
2397811 ATCTTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTC
1 --C-TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA-C--C
2397861 ATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGC
1 --CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGC
2397904 TCCTTCGTCA
Statistics
Matches: 324, Mismatches: 29, Indels: 48
0.81 0.07 0.12
Matches are distributed among these distances:
42 2 0.01
43 116 0.36
44 2 0.01
48 1 0.00
49 112 0.35
50 7 0.02
52 5 0.02
53 77 0.24
54 1 0.00
56 1 0.00
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (44 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC
Found at i:2397639 original size:49 final size:48
Alignment explanation
Indices: 2397432--2397957 Score: 490
Period size: 49 Copynumber: 10.8 Consensus size: 48
2397422 GCAACCCTTC
* * *
2397432 TAAGCCCAATATTGCTAGCCTTGAATCAGCATATTGGCACCTTTTCCATCTT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC-TTT---TCTT
* * * *
2397484 TAAGACCGATGTCGCTGGCCTTGAATCAGCACATTGGCA-C----CTT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTTCTT
*
2397527 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCA-C----CTT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTTCTT
* *
2397570 TAAG-CCTAATATCACTGGCCTTGAATTAGCATATTGGCACCTTTGTCTT
1 TAAGTCC-AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTT-TCTT
*
2397619 TAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCA-C----CTT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTTCTT
*
2397662 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGTCACCTTTGTCATATTT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTT-TC----TT
* * * *
2397715 TAAGTCCAATGTTGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-TTCTT
*
2397764 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC-TT-T--TC-TT
* * * *
2397817 TAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-TTCTT
*
2397866 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCTCCTTCGTCATCTT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT--T--TCTT
** * * *
2397918 TAAAACCCAATGTTGCTGGCCTTGAATCAGCACATTGGCA
1 T-AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
2397958 TTCTTCTCAT
Statistics
Matches: 401, Mismatches: 46, Indels: 53
0.80 0.09 0.11
Matches are distributed among these distances:
42 2 0.00
43 116 0.29
44 2 0.00
48 1 0.00
49 117 0.29
50 6 0.01
51 1 0.00
52 42 0.10
53 114 0.28
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (48 bp):
TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTTCTT
Found at i:2397683 original size:22 final size:22
Alignment explanation
Indices: 2397616--2397683 Score: 54
Period size: 22 Copynumber: 3.1 Consensus size: 22
2397606 GCACCTTTGT
2397616 CTTTAAGTCCAATATCGCTGGC
1 CTTTAAGTCCAATATCGCTGGC
* * *
2397638 CTTGAA-TCAGCACAT-TGGC--AC
1 CTTTAAGTC--CA-ATATCGCTGGC
2397659 CTTTAAGTCCAATATCGCTGGC
1 CTTTAAGTCCAATATCGCTGGC
2397681 CTT
1 CTT
2397684 GAATCAGCAT
Statistics
Matches: 33, Mismatches: 6, Indels: 14
0.62 0.11 0.26
Matches are distributed among these distances:
19 2 0.06
20 5 0.15
21 8 0.24
22 11 0.33
23 5 0.15
24 2 0.06
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.31
Consensus pattern (22 bp):
CTTTAAGTCCAATATCGCTGGC
Found at i:2397740 original size:53 final size:52
Alignment explanation
Indices: 2397660--2398053 Score: 370
Period size: 53 Copynumber: 7.6 Consensus size: 52
2397650 CATTGGCACC
* *
2397660 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGTCACCTTTGTCATAT
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTGTCAT-T
* * *
2397713 TTTAAGTCCAATGTTGCTGGCCTTGAATCAGCACATTGGCACC--T-TCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTGTCATT
* *
2397762 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCT
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTGTCAT-T
* * *
2397815 TTTAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCACC--T-TCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTGTCATT
* * *
2397864 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCTCCTTCGTCATCT
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTGTCAT-T
* ** * * * * *
2397917 TTAAAACCCAATGTTGCTGGCCTTGAATCAGCACATTGGCA-TTCTTCTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCT-TTGTCATT
* * * ** * * * *
2397969 TTCAAGTCTAATGTCGCTAACCGTGAATCAGCACATTGACATCCTTTTTCTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCA-CC--TTTGTCATT
** * *
2398024 TTTAAACCCAATATCGTTGGCCGTGAATCA
1 TTTAAGTCCAATATCGCTGGCCTTGAATCA
2398054 ACGTATTGGT
Statistics
Matches: 278, Mismatches: 50, Indels: 24
0.79 0.14 0.07
Matches are distributed among these distances:
49 78 0.28
50 8 0.03
51 3 0.01
52 41 0.15
53 117 0.42
55 30 0.11
56 1 0.00
ACGTcount: A:0.24, C:0.26, G:0.16, T:0.34
Consensus pattern (52 bp):
TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTGTCATT
Found at i:2397807 original size:102 final size:96
Alignment explanation
Indices: 2397761--2397957 Score: 268
Period size: 102 Copynumber: 2.0 Consensus size: 96
2397751 GCACCTTCAT
*
2397761 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTTAAGTCCAA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCATCTTTTAAGTCCAA
*
2397826 TGTCGTTGGCCTTGAATCAGCACATTGGCACCTTC
66 TGTCGCTGGCCTTGAATCAGCACATTGGCA----C
* * * **
2397861 ATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCTCCTTCGTCATCTTTAAAACCC
1 --CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCATCTTTTAAGTCC
*
2397926 AATGTTGCTGGCCTTGAATCAGCACATTGGCA
64 AATGTCGCTGGCCTTGAATCAGCACATTGGCA
2397958 TTCTTCTCAT
Statistics
Matches: 88, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
102 88 1.00
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.33
Consensus pattern (96 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCATCTTTTAAGTCCAA
TGTCGCTGGCCTTGAATCAGCACATTGGCAC
Found at i:2398750 original size:19 final size:18
Alignment explanation
Indices: 2398725--2398821 Score: 97
Period size: 19 Copynumber: 5.8 Consensus size: 18
2398715 ATTTCAACTA
2398725 TTTGTATCGATACATAAG
1 TTTGTATCGATACATAAG
2398743 TGTTGTATCGATAC--AA-
1 T-TTGTATCGATACATAAG
2398759 --TGTATCGATACATAAG
1 TTTGTATCGATACATAAG
2398775 TGTTGTATCGATAC--AA-
1 T-TTGTATCGATACATAAG
2398791 --TGTATCGATACATAAG
1 TTTGTATCGATACATAAG
2398807 TTTTGTATCGATACA
1 -TTTGTATCGATACA
2398822 ATGTATCGCT
Statistics
Matches: 66, Mismatches: 0, Indels: 25
0.73 0.00 0.27
Matches are distributed among these distances:
13 22 0.33
15 4 0.06
17 4 0.06
18 1 0.02
19 35 0.53
ACGTcount: A:0.33, C:0.12, G:0.18, T:0.37
Consensus pattern (18 bp):
TTTGTATCGATACATAAG
Found at i:2398764 original size:13 final size:13
Alignment explanation
Indices: 2398746--2398802 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
2398736 ACATAAGTGT
2398746 TGTATCGATACAA
1 TGTATCGATACAA
2398759 TGTATCGATACATAA
1 TGTATCGATAC--AA
2398774 GTGTTGTATCGATACAA
1 ----TGTATCGATACAA
2398791 TGTATCGATACA
1 TGTATCGATACA
2398803 TAAGTTTTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 23 0.61
15 2 0.05
17 2 0.05
19 11 0.29
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2398768 original size:32 final size:32
Alignment explanation
Indices: 2398727--2398829 Score: 197
Period size: 32 Copynumber: 3.2 Consensus size: 32
2398717 TTCAACTATT
2398727 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
2398759 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
*
2398791 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
2398823 TGTATCG
1 TGTATCG
2398830 CTACGAAGCT
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
32 70 1.00
ACGTcount: A:0.33, C:0.13, G:0.18, T:0.36
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTATCGATACAA
Found at i:2398950 original size:52 final size:52
Alignment explanation
Indices: 2398907--2399032 Score: 225
Period size: 52 Copynumber: 2.4 Consensus size: 52
2398897 CACTGATCTT
2398907 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
**
2398959 TGTATCGATACATATAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
*
2399011 TGTATTGATACATGCAGGCAAA
1 TGTATCGATACATGCAGGCAAA
2399033 ATTTCATATT
Statistics
Matches: 69, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
52 69 1.00
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.28
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
Found at i:2404057 original size:159 final size:156
Alignment explanation
Indices: 2402474--2405012 Score: 848
Period size: 158 Copynumber: 16.0 Consensus size: 156
2402464 TTGCATCTTC
** *
2402474 AAGGGATAAACTTTGATTTAAAAGAAAATAGGGCAAAGAAAAGATTTTCACGCAAAAGAAAATCA
1 AAGGGATAAACTTTGATTT-AAAGAAAAT-GGGCAAAGAAAAGATTTTCTTGCAAAAGAAAAGCA
* * * **
2402539 TCAATATCATTTATCCTAATAAGGAGAATATATTTATAATGCCTAATCACAAAATGAATGAAGAT
64 TCAATATCATGTATCCTAATGAGGAGAATATGTTTATGGTGCCTAATCACAAAA-GAATGAAGAT
* **
2402604 CATTACTAGAATCCAAGTTTGTCTCCTTT
128 CATTACTAGAATCCATGTTTGTCTTATTT
* * * * * ** **
2402633 GAGGCAGAAACTTAGACTTTACAA-AAAGTGATCTAAA-AAAAGCCTTTCTTG-AGAAATG-AAA
1 AAGGGATAAACTTTGA-TTTA-AAGAAAATGGGC-AAAGAAAAGATTTTCTTGCA-AAA-GAAAA
* * * * * * *
2402694 GCATCAATATGATGCATCCTAATGAGAAGACTATGTTTATGGTACCTATTTCAGAAAAGAATTG-
61 GCATCAATATCATGTATCCTAATGAGGAGAATATGTTTATGGTGCCTA-ATCACAAAAGAA-TGA
* * * *
2402758 AGATTAGTA-TGAGTATTCATGTTTGTCTTATTT
124 AGATCATTACT-AGAATCCATGTTTGTCTTATTT
** * * ** ****
2402791 AAGATACAAACATTGATTTTATCGAAAAT-GGCAAAAGGAAAAG-TGTTTCTTGCATCCCCAAAA
1 AAGGGATAAACTTTGA-TTTAAAGAAAATGGGC-AAA-GAAAAGAT-TTTCTTGCA-AAAGAAAA
* * * * * ** * * *
2402854 -CATCAATTTCATGTATCCTACTAAAGG-GAATGTGTTTGTCCCCCAATCTCCTAAAATCTCCTA
61 GCATCAATATCATGTATCCTAAT-GAGGAGAATATGTTTAT-----GGT-GCCT--AATC-ACAA
* ** * ** *
2402917 AAGAA-AAGAGATTGTTACGAGAATTGATGCTTGTCTTATTT
116 AAGAATGA-AGATCATTACTAGAATCCATGTTTGTCTTATTT
* * * * ** *
2402958 ATGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCACGCAAAAGAAAATCA
1 AAGGGATAAACTTTGA-TTTAAAGAAAAT-GGGCAAAGAAAAGATTTTCTTGCAAAAGAAAAGCA
* * * * * * * *
2403023 TCTATTTCTTTTATCCTAATGAGGGGAATGTGTTATATAGTGCCTAATCACAAAATGAAAGAAGA
64 TCAATATCATGTATCCTAATGAGGAGAATATGTT-TATGGTGCCTAATCACAAAA-GAATGAAGA
* * *
2403088 TCGTTACTAGAATCCAAGTTTGTCTCATTT
127 TCATTACTAGAATCCATGTTTGTCTTATTT
* * * * **
2403118 AAGGCAAAAACTTAGACTTTATAAAAAAACCGTGGG--AA-AAAAGCCTTTCTTGCAAAACG-AA
1 AAGGGATAAACTTTGA-TTTA-AAGAAAA---TGGGCAAAGAAAAGATTTTCTTGCAAAA-GAAA
* * *
2403179 AGCATCAATATGATGTATCCTAATGAGAAGACA-ATGTTTATGGTGCCTAATCCAAAAAAGAATG
60 AGCATCAATATCATGTATCCTAATGAGGAGA-ATATGTTTATGGTGCCTAAT-CACAAAAGAATG
** * * * * *
2403243 GGGATTAGTA-TGAGTATTCATGTTTATCTTATTT
123 AAGATCATTACT-AGAATCCATGTTTGTCTTATTT
* * * * * *** * ** *
2403277 AAGAGATAAACTTTGATTCTATCA-AAAACGGTGGAAAGAAAAGTTTTTCTTATGACATCAAATC
1 AAGGGATAAACTTTGATT-TA-AAGAAAATGG-GCAAAGAAAAGATTTTCTTGCAAAAGAAAAGC
* * * * * * * * *
2403341 ATCACTGTTATGTATCCTAAGGAAGG-GAATGTGTTT-TGGCT-CCGATTCTCATAAAGAATGGA
63 ATCAATATCATGTATCCTAATG-AGGAGAATATGTTTATGG-TGCCTAATCACA-AAAGAATGAA
** * * * * * *
2403403 GATTGTTA-TGAGAAACGATGCTTGTCATCTTC
125 GATCATTACT-AGAATCCATGTTTGTCTTATTT
* * * *
2403435 AAGGGATGAACTTTGATTTAAAAGAAAATAGGGCAAAGAAAAGA-TTCCAATGCAAAAGAAAATC
1 AAGGGATAAACTTTGATTT-AAAGAAAAT-GGGCAAAGAAAAGATTTTC-TTGCAAAAGAAAAGC
* * * * *
2403499 ATCAATATCACT-TATCGTAATGAGGAAAATATGTTTATAGAGCCTAATCGCAAAATGAATGAAG
63 ATCAATATCA-TGTATCCTAATGAGGAGAATATGTTTATGGTGCCTAATCACAAAA-GAATGAAG
* * *
2403563 ATCATTGCTAGAATCCAAGTTTGTCTCATTT
126 ATCATTACTAGAATCCATGTTTGTCTTATTT
* ** * ** ** * *
2403594 GAA-GCACGAACTTAGACTTTATCAA-AAAATGGTGGGAA-AAAAGCCTTTCTTGTGAAACG-AA
1 -AAGGGATAAACTTTGA-TTTA--AAGAAAATGG-GCAAAGAAAAGATTTTCTTG-CAAAAGAAA
* * * * * * *
2403655 AGCTTCAATATGATGTATCCTAAAGA-GAGGATTATGTTTATGGTGCGTTATC-CTGAAAGAATG
60 AGCATCAATATCATGTATCCTAATGAGGA-GAATATGTTTATGGTGCCTAATCAC-AAAAGAATG
* * * *
2403718 --GGT-A-T--GAGTATCCACGTTTGTCTTATTT
123 AAGATCATTACTAGAATCCATGTTTGTCTTATTT
* * * * * * * **
2403746 AAGAGACAAACTTTGATTCTATCA-AAAATGGTGGAAGGAAAAGTTTTTCTTGCAACATCAAAGC
1 AAGGGATAAACTTTGATT-TA-AAGAAAATGG-GCAAAGAAAAGATTTTCTTGCAAAAGAAAAGC
* * * * * * * * **
2403810 ATTAATTTCATATCTCCTAGTGAAGG-GAATGTGTTT-TGACTTCAC-AATCTTGAAAAGAACTG
63 ATCAATATCATGTATCCTAATG-AGGAGAATATGTTTATG-GTGC-CTAATC-ACAAAAGAA-TG
* * *
2403872 -AGA-CAGTTA-TGAGAATCGATGCTTGTCTTTTTT
123 AAGATCA-TTACT-AGAATCCATGTTTGTCTTATTT
* *
2403905 AAGGGATAAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCA
1 AAGGGATAAACTTTGATTTAAA-GAAAAT-GGGCAAAGAAAAGATTTTCTTGCAAAAGAAAAGCA
* * * *
2403970 TCAATATAATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAACGAATGAAGAT
64 TCAATATCATGTATCCTAATGAGGAGAATATGTTTATGGTGCCTAATCACAAAA-GAATGAAGAT
* *
2404035 CATTACTAGAATCCACGTTTGTCTCATTT
128 CATTACTAGAATCCATGTTTGTCTTATTT
* ** * * ** ** *
2404064 AAGGCACGAACTTAGACTTTAAA-AAATTTGGTGGGAA-AAAAGCGTTTCTTGCGAAATG-AAAG
1 AAGGGATAAACTTTGA-TTTAAAGAAA-ATGG-GCAAAGAAAAGATTTTCTTGC-AAAAGAAAAG
* * * * * *
2404126 CATCAATA-CGATGTATCGTAAAGAGAAGACTATGTTTATGGTACCTTATC-CTGAAAAGAATG-
62 CATCAATATC-ATGTATCCTAATGAGGAGAATATGTTTATGGTGCCTAATCAC--AAAAGAATGA
* * * * * *
2404188 GGGTTAGTA-TGAGTATTCATGTTTGTCTTATTT
124 AGATCATTACT-AGAATCCATGTTTGTCTTATTT
* * ** * * * * * **
2404221 AAGAGACAAACTTTGATTCTATCGAAAATGGTGGAAGGAAAAG-TTCTTCTTACGACATCAAAGC
1 AAGGGATAAACTTTGATT-TAAAGAAAATGG-GCAAAGAAAAGATT-TTCTTGCAAAAGAAAAGC
* * * * **
2404285 ATCAATGTCATGTATCCTAACGAAGG-GAATGTGTCTT-TGGTTCAC-AATCTTGAAAAGAACT-
63 ATCAATATCATGTATCCTAATG-AGGAGAATATGT-TTATGGTGC-CTAATC-ACAAAAGAA-TG
* *
2404346 AAGA-CAGTTACGAGAATCGAT-TCTTGTCTTATTT
123 AAGATCA-TTACTAGAATCCATGT-TTGTCTTATTT
* * * * * *
2404380 AAGGGTTTAACTTTGATTTAAAGGAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCAT
1 AAGGGATAAACTTTGATTTAAAGAAAAT-GGGCAAAGAAAAGATTTTCTTGCAAAAGAAAAGCAT
* ** * *
2404445 CAATATCATTTATCCTAATGAGGAGAATGCGCTTATTGTGCCTAATCACAAAATGAATGAAGATC
65 CAATATCATGTATCCTAATGAGGAGAATATGTTTATGGTGCCTAATCACAAAA-GAATGAAGATC
* * ** *
2404510 ATTTCTAGAATCTACATTTGTCTCATTT
129 ATTACTAGAATCCATGTTTGTCTTATTT
* * * * * * ** *
2404538 GA-GGTTCGAACCTAGACTTTAAA-AAATTTGGTGGGAA-AAAAGCTTTTCTTGCAAAATG-AAA
1 AAGGGAT-AAACTTTGA-TTTAAAGAAA-ATGG-GCAAAGAAAAGATTTTCTTGCAAAA-GAAAA
* * *
2404599 GCATCAATA-CAATGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTAATTCACAAAAGAAT-A
61 GCATCAATATC-ATGTATCCTAATGAGGAGAATATGTTTATGGTGCCTAA-TCACAAAAGAATGA
* * * * * * *
2404662 GGGATTAGTA-TGAGTATTCATGTTTGCCTTATTC
124 -AGATCATTACT-AGAATCCATGTTTGTCTTATTT
** * * * * * * * * **
2404696 AAGAAACAAACTTTGATTCTATCA-AAGATGGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGC
1 AAGGGATAAACTTTGATT-TA-AAGAAAATGG-GCAAAGAAAAGATTTTCTTGCAAAAGAAAAGC
* * * * * * * ***
2404760 ATCAATTTCATGTATCCTAAGGAAGG-GAGTGTGCTT-TGGCTTCATAATGTTGAAAAGAACTG-
63 ATCAATATCATGTATCCTAATG-AGGAGAATATGTTTATGG-TGCCTAAT-CACAAAAGAA-TGA
* * *
2404822 AGA-CAGTTACGAGAATCGAT-TCTTGTCGTATTT
124 AGATCA-TTACTAGAATCCATGT-TTGTCTTATTT
* * * * * * *
2404855 AAGGTA-AGAACATTGTTTTAAAGGAAAATAGGCAAAGAAAAGA-TTCCAATGCAAAAGAAAATC
1 AAGGGATA-AACTTTGATTTAAA-GAAAATGGGCAAAGAAAAGATTTTC-TTGCAAAAGAAAAGC
* * * * *
2404918 ATCGATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCGCAAAATGAAAGAAGA
63 ATCAATATCATGTATCCTAATGAGGAGAATATGTTTATGGTGCCTAATCACAAAA-GAATGAAGA
* *
2404983 TCATTACTAGAATCCAAGTTTGTCTCATTT
127 TCATTACTAGAATCCATGTTTGTCTTATTT
2405013 GAAGCACAAA
Statistics
Matches: 1709, Mismatches: 505, Indels: 333
0.67 0.20 0.13
Matches are distributed among these distances:
151 20 0.01
152 74 0.04
153 7 0.00
154 4 0.00
155 5 0.00
156 6 0.00
157 97 0.06
158 633 0.37
159 580 0.34
160 147 0.09
161 12 0.01
162 3 0.00
163 5 0.00
164 2 0.00
165 3 0.00
166 9 0.01
167 93 0.05
168 6 0.00
169 3 0.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (156 bp):
AAGGGATAAACTTTGATTTAAAGAAAATGGGCAAAGAAAAGATTTTCTTGCAAAAGAAAAGCATC
AATATCATGTATCCTAATGAGGAGAATATGTTTATGGTGCCTAATCACAAAAGAATGAAGATCAT
TACTAGAATCCATGTTTGTCTTATTT
Found at i:2404394 original size:475 final size:473
Alignment explanation
Indices: 2402132--2405171 Score: 3684
Period size: 475 Copynumber: 6.4 Consensus size: 473
2402122 CGACAAATAT
* * * * *
2402132 TTACTAGAATCCACGTTTGTCTCATTCAAGGCACGAACCTAGACTTTAACAAATTTGGTGGGAAA
1 TTACTAGAATCCAAGTTTGTCTCATTTAAGGCACGAACTTAGACTTTAAAAAATATGGTGGGAAA
*
2402197 AAAGCCTTTCTTGCGAAATGAAAGCATCAATACGATGTATCCTAAAGAGAGGACTATGTTTATGG
66 AAAGCCTTTCTTGCGAAATGAAAGCATCAATACGATGTATCCTAAAGAGAAGACTATGTTTATGG
* * * *
2402262 TACCTAATTC-GCAAAAGAATGGGGATTAGTATGGGTATTCATGTTTGTCTTATTTAAGAAACAA
131 TACCTTATCCAG-AAAAGAATGGGG-TTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
*
2402326 ACTTTGATTCTATCAAAAATGGTGGAAGGAAAAGTTTTTCTTGTGACACCAAAGCATCAATTTCA
194 ACTTTGATTCTATCAAAAATGGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCA
* * * * ** *
2402391 TGTATCCTAAGGAAGGGACTGTGTTTTGGCTC-CGATTCTTGTAAAGAATGGAGATTGTTATGAG
259 TGTATCCTAAGGAAGGGAATGTGTTTTGGTTCAC-AATCTTGAAAAGAAT-GAGACAGTTACGAG
* * * * * *
2402455 AAACGATGCTTG-CATCTTCAAGGGATAAACTTTGATTTAAAAGAAAATAGGGCAAAGAAAAGAT
322 AATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGAT
* * * * *
2402519 TTTCACGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATATATTTATAATGCCTA
387 TTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTA
2402584 ATCACAAAATGAATGAAGATCA
452 ATCACAAAATGAATGAAGATCA
* * * * ***
2402606 TTACTAGAATCCAAGTTTGTCTCCTTTGAGGCA-GAAACTTAGACTTTACAAAAA-GTGATCTAA
1 TTACTAGAATCCAAGTTTGTCTCATTTAAGGCACG-AACTTAGACTTTA-AAAAATATGGTGGGA
* * * *
2402669 AAAAAGCCTTTCTTGAGAAATGAAAGCATCAATATGATGCATCCTAATGAGAAGACTATGTTTAT
64 AAAAAGCCTTTCTTGCGAAATGAAAGCATCAATACGATGTATCCTAAAGAGAAGACTATGTTTAT
* * * *
2402734 GGTACC-TATTTCAGAAAAGAATTGAGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGATAC
129 GGTACCTTA-TCCAGAAAAGAA-TGGGGTTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAC
* * * *** * * *
2402798 AAACATTGATTTTATCGAAAATGGCAAAAGGAAAAGTGTTTCTTGC-ATCCCCAAAACATCAATT
192 AAACTTTGATTCTATCAAAAATGGTGGAAGGAAAAGTTTTTCTTGCGA-CACCAAAGCATCAATT
*** ** * *** *
2402862 TCATGTATCCTACTAAAGGGAATGTGTTTGTCCCCCAATCTCCTAAAATCTCCTAAAGAAAAGAG
256 TCATGTATCCTAAGGAAGGGAATGTGTTT-T-----GGT-T-C-ACAATCTTGAAAAG-AATGAG
** * * *
2402927 ATTGTTACGAGAATTGATGCTTGTCTTATTTATGGGATGAACTTTGATTTTAAGGAAAATAGGGC
311 ACAGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGC
* * * * * *
2402992 AAAGAAAAGATTTCCACGCAAAAGAAAATCATCTATTTCTTTTATCCTAATGAGGGGAATGTGTT
376 AAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTT
* *
2403057 ATATAGTGCCTAATCACAAAATGAAAGAAGATCG
441 -TATAGTGCCTAATCACAAAATGAATGAAGATCA
** * **
2403091 TTACTAGAATCCAAGTTTGTCTCATTTAAGGCAAAAACTTAGACTTTATAAAAAAACCGTGGGAA
1 TTACTAGAATCCAAGTTTGTCTCATTTAAGGCACGAACTTAGACTTTA-AAAAATATGGTGGGAA
* * * * *
2403156 AAAAGCCTTTCTTGCAAAACGAAAGCATCAATATGATGTATCCTAATGAGAAGACAATGTTTATG
65 AAAAGCCTTTCTTGCGAAATGAAAGCATCAATACGATGTATCCTAAAGAGAAGACTATGTTTATG
* * * * *
2403221 GTGCCTAATCCAAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTATCTTATTTAAGAGATAA
130 GTACCTTATCCAGAAAAGAATGGGG-TTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* * ** * * *
2403286 ACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGTTTTTCTTATGACATCAAATCATCACTGTT-
194 ACTTTGATTCTATCAAAAATGGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAAT-TTC
* * * ** *
2403350 ATGTATCCTAAGGAAGGGAATGTGTTTTGGCTC-CGAT-TCTCATAAAGAATGGAGATTGTTATG
258 ATGTATCCTAAGGAAGGGAATGTGTTTTGGTTCACAATCT-TGA-AAAGAAT-GAGACAGTTACG
* * * * *
2403413 AGAAACGATGCTTGTCATCTTCAAGGGATGAACTTTGATTTAAAAGAAAATAGGGCAAAGAAAAG
320 AGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAG
* * * *
2403478 A-TTCCAATGCAAAAGAAAATCATCAATATCACTTATCGTAATGAGGAAAATATGTTTATAGAGC
385 ATTTCC-ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGC
*
2403542 CTAATCGCAAAATGAATGAAGATCA
449 CTAATCACAAAATGAATGAAGATCA
*
2403567 TTGCTAGAATCCAAGTTTGTCTCATTTGAA-GCACGAACTTAGACTTTATCAAAAA-ATGGTGGG
1 TTACTAGAATCCAAGTTTGTCTCATTT-AAGGCACGAACTTAGACTTTA--AAAAATATGGTGGG
* * * * * *
2403630 AAAAAAGCCTTTCTTGTGAAACGAAAGCTTCAATATGATGTATCCTAAAGAGAGGATTATGTTTA
63 AAAAAAGCCTTTCTTGCGAAATGAAAGCATCAATACGATGTATCCTAAAGAGAAGACTATGTTTA
* * * * *
2403695 TGGTGCGTTATCCTG-AAAGAAT--GG---GTATGAGTATCCACGTTTGTCTTATTTAAGAGACA
128 TGGTACCTTATCCAGAAAAGAATGGGGTTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACA
* * *
2403754 AACTTTGATTCTATCAAAAATGGTGGAAGGAAAAGTTTTTCTTGCAACATCAAAGCATTAATTTC
193 AACTTTGATTCTATCAAAAATGGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTC
* * * *
2403819 ATATCTCCT-AGTGAAGGGAATGTGTTTTGACTTCACAATCTTGAAAAGAACTGAGACAGTTATG
258 ATGTATCCTAAG-GAAGGGAATGTGTTTTG-GTTCACAATCTTGAAAAGAA-TGAGACAGTTACG
* *
2403883 AGAATCGATGCTTGTCTTTTTTAAGGGATAAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAG
320 AGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAG
* * *
2403948 ATTTTCATGCAAAAGAAAATCATCAATATAATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
385 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCC
*
2404013 TAATCACAAAACGAATGAAGATCA
450 TAATCACAAAATGAATGAAGATCA
* *
2404037 TTACTAGAATCCACGTTTGTCTCATTTAAGGCACGAACTTAGACTTTAAAAAATTTGGTGGGAAA
1 TTACTAGAATCCAAGTTTGTCTCATTTAAGGCACGAACTTAGACTTTAAAAAATATGGTGGGAAA
* *
2404102 AAAGCGTTTCTTGCGAAATGAAAGCATCAATACGATGTATCGTAAAGAGAAGACTATGTTTATGG
66 AAAGCCTTTCTTGCGAAATGAAAGCATCAATACGATGTATCCTAAAGAGAAGACTATGTTTATGG
*
2404167 TACCTTATCCTGAAAAGAATGGGGTTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAAC
131 TACCTTATCCAGAAAAGAATGGGGTTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAAC
* * * * *
2404232 TTTGATTCTATCGAAAATGGTGGAAGGAAAAGTTCTTCTTACGACATCAAAGCATCAATGTCATG
196 TTTGATTCTATCAAAAATGGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCATG
* *
2404297 TATCCTAACGAAGGGAATGTGTCTTTGGTTCACAATCTTGAAAAGAACTAAGACAGTTACGAGAA
261 TATCCTAAGGAAGGGAATGTGT-TTTGGTTCACAATCTTGAAAAGAA-TGAGACAGTTACGAGAA
* * *
2404362 TCGATTCTTGTCTTATTTAAGGGTTTAACTTTGATTTAAAGG-AAATAGGGCAAAGAAAAGATTT
324 TCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTT
** * *
2404426 CCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGCGCTTATTGTGCCTAAT
389 CCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAAT
2404491 CACAAAATGAATGAAGATCA
454 CACAAAATGAATGAAGATCA
* * * ** * *
2404511 TTTCTAGAATCTACA-TTTGTCTCATTTGAGGTTCGAACCTAGACTTTAAAAAATTTGGTGGGAA
1 TTACTAGAATCCA-AGTTTGTCTCATTTAAGGCACGAACTTAGACTTTAAAAAATATGGTGGGAA
* * *
2404575 AAAAGCTTTTCTTGCAAAATGAAAGCATCAATACAATGTATCCTAAAGAGAAGACTATGTTTATG
65 AAAAGCCTTTCTTGCGAAATGAAAGCATCAATACGATGTATCCTAAAGAGAAGACTATGTTTATG
* * * * * * * *
2404640 GTGCCTAATTCACAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGCCTTATTCAAGAAACAA
130 GTACCTTATCCAGAAAAGAAT-GGGGTTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
*
2404705 ACTTTGATTCTATCAAAGATGGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCA
194 ACTTTGATTCTATCAAAAATGGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCA
* * * *
2404770 TGTATCCTAAGGAAGGGAGTGTGCTTTGGCTTCATAATGTTGAAAAGAACTGAGACAGTTACGAG
259 TGTATCCTAAGGAAGGGAATGTGTTTTGG-TTCACAATCTTGAAAAGAA-TGAGACAGTTACGAG
* * * * * *
2404835 AATCGATTCTTGTCGTATTTAAGGTAAGAACATTGTTTTAAAGGAAAATA-GGCAAAGAAAAGA-
322 AATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGAT
*
2404898 TTCCAATGCAAAAGAAAATCATCGATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCT
387 TTCC-ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCT
* *
2404963 AATCGCAAAATGAAAGAAGATCA
451 AATCACAAAATGAATGAAGATCA
* * * * * *
2404986 TTACTAGAATCCAAGTTTGTCTCATTTGAA-GCACAAACTTAGAATTAAAAAAAAATAGTGAGAA
1 TTACTAGAATCCAAGTTTGTCTCATTT-AAGGCACGAACTTAGACTTTAAAAAATATGGTGGGAA
* * * * * *
2405050 AAAAGCCTTTCTTGCTAAACGAAAACATCAATACGATGTATCCTAAAGAGAAAACTATGATTATA
65 AAAAGCCTTTCTTGCGAAATGAAAGCATCAATACGATGTATCCTAAAGAGAAGACTATGTTTATG
*
2405115 GTACCTTATCCTA-AAAAGAGTGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTA
130 GTACCTTATCC-AGAAAAGAATGGGG-TTAGTATGAGTATTCATGTTTGTCTTATTTA
2405172 TGGGAAAAAA
Statistics
Matches: 2209, Mismatches: 300, Indels: 113
0.84 0.11 0.04
Matches are distributed among these distances:
468 9 0.00
469 188 0.09
470 203 0.09
471 9 0.00
472 3 0.00
473 5 0.00
474 480 0.22
475 627 0.28
476 167 0.08
477 121 0.05
478 1 0.00
479 1 0.00
481 1 0.00
482 1 0.00
483 32 0.01
484 93 0.04
485 83 0.04
486 181 0.08
487 4 0.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (473 bp):
TTACTAGAATCCAAGTTTGTCTCATTTAAGGCACGAACTTAGACTTTAAAAAATATGGTGGGAAA
AAAGCCTTTCTTGCGAAATGAAAGCATCAATACGATGTATCCTAAAGAGAAGACTATGTTTATGG
TACCTTATCCAGAAAAGAATGGGGTTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAAC
TTTGATTCTATCAAAAATGGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCATG
TATCCTAAGGAAGGGAATGTGTTTTGGTTCACAATCTTGAAAAGAATGAGACAGTTACGAGAATC
GATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCC
ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCA
CAAAATGAATGAAGATCA
Found at i:2405276 original size:128 final size:128
Alignment explanation
Indices: 2405047--2405299 Score: 337
Period size: 128 Copynumber: 2.0 Consensus size: 128
2405037 AAAATAGTGA
*
2405047 GAAAAAAGCCTTTCTTGCTAAACGAAAACATCAATACGATGTATCCTAAAGAGAAAACTATGATT
1 GAAAAAAGCCTTTCTTGCAAAACGAAAACATCAATACGATGTATCCTAAAGAGAAAACTATGATT
* * * * **
2405112 ATAGTACCTTATCCTAAAAAGAGTGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTATGG
66 ACAGTACCTAATCCTAAAAAGAATGGGGATCAGTATGAGTATTCATGTTTACCTTATTTATGG
* * * * *
2405175 GAAAAAAGCCTTTCTTGCAAAATGAAAGCATCAATATGATGTATCCTAAAGAGAAGACTATGTTT
1 GAAAAAAGCCTTTCTTGCAAAACGAAAACATCAATACGATGTATCCTAAAGAGAAAACTATGATT
* * * * *
2405240 ACGGTGCCTAAT-TTGCAAAAGAATGGGGATCGGTATGAGTATTCATGTTTACCTTATTTA
66 ACAGTACCTAATCCT-AAAAAGAATGGGGATCAGTATGAGTATTCATGTTTACCTTATTTA
2405300 AGAAACAAAC
Statistics
Matches: 107, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
127 1 0.01
128 106 0.99
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (128 bp):
GAAAAAAGCCTTTCTTGCAAAACGAAAACATCAATACGATGTATCCTAAAGAGAAAACTATGATT
ACAGTACCTAATCCTAAAAAGAATGGGGATCAGTATGAGTATTCATGTTTACCTTATTTATGG
Found at i:2406235 original size:158 final size:156
Alignment explanation
Indices: 2405599--2406243 Score: 372
Period size: 158 Copynumber: 4.1 Consensus size: 156
2405589 TAGAAACCAA
* * *
2405599 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTATAAAAAATGGTGGGAAAAAAGCCTTTTTTGC
1 GTTTGTCTTATTTGAGGCATGAACTTAGA-TTTATAAAAAATGGTGGGAAAAAAGCCTTTCTTGC
* * * * * **
2405664 AAAACGAAAGCATCAATATGATGTATCCTGAA-GAGAGGACTATATTTATGGTGCCTAATTCGGA
65 AAAGCAAAAGCATCAATATCATGTATCCT-AATGAGAAGACAATATTTATGGTGCCTAA-TCCAA
* * *
2405728 AAAGAATGGGGATTAGTATGAGTATTCAT
128 AAAGAAAGGAGATTAGTATGAGAATTCAT
* * * **
2405757 GTTTGT-TATATTTAAGAGACA--AACTTTGATTCTATCAAAAATGGT-GGAAGGAAAAGTGTTT
1 GTTTGTCT-TATTT--GAGGCATGAACTTAGATT-TATAAAAAATGGTGGGAA--AAAAGCCTTT
** * * * * ** *
2405818 CTTGCAACCCCAAAGTATCAATTTCTTGTATCCTAAT--GAAGGGAATGTGTT-T-GT-CTCTCA
60 CTTGCAAAGCAAAAGCATCAATATCATGTATCCTAATGAGAAGACAATAT-TTATGGTGC-CT-A
* * * * * *
2405878 ATCTCATACAGAAAGCATATT-GTTACGAGAATTGAT
122 ATC-CAAAAAGAAAGGAGATTAG-TATGAGAATTCAT
* * * * * * * *
2405914 GCTTGTCTTATTTAAGGGATGAACTTTGATATTA-AGGAAAATAG-GGTAAAGGAAAG-ATTTCC
1 GTTTGTCTTATTTGAGGCATGAACTTAGAT-TTATA-AAAAATGGTGGGAAA--AAAGCCTTT-C
* * * * * ** * * *
2405976 ATGCAAAAG-AAAATCATCAATTTCTTTTATCCTAATGAGGGGA-ATGTGTTTATAGTGCCTAAT
61 TTGC-AAAGCAAAAGCATCAATATCATGTATCCTAATGAGAAGACA-ATATTTATGGTGCCTAA-
* * * * *
2406039 TGCAAAATA-AAAGAAGATTATTACT-AGAATCCAA
123 TCCAAAA-AGAAAGGAGATTAGTA-TGAGAATTCAT
*
2406073 GTTTGTCTCATTTGAGGCATGAACTTAGACTTTATAAAAAATGGTGGGAAAAAAGCCTTTCTTGC
1 GTTTGTCTTATTTGAGGCATGAACTTAGA-TTTATAAAAAATGGTGGGAAAAAAGCCTTTCTTGC
*
2406138 AAAGCAAAAGCATCAATATGATGTATCCTAATGAGAAGACAATATTTATGGTGCCTAATCCACAA
65 AAAGCAAAAGCATCAATATCATGTATCCTAATGAGAAGACAATATTTATGGTGCCTAATCCA-AA
* * * *
2406203 AAGAATGGGGATTAGTATGAGTATTCTT
129 AAGAAAGGAGATTAGTATGAGAATTCAT
2406231 GTTTGTCTTATTT
1 GTTTGTCTTATTT
2406244 AAGAGACAAA
Statistics
Matches: 356, Mismatches: 90, Indels: 82
0.67 0.17 0.16
Matches are distributed among these distances:
155 5 0.01
156 10 0.03
157 105 0.29
158 119 0.33
159 98 0.28
160 18 0.05
161 1 0.00
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.32
Consensus pattern (156 bp):
GTTTGTCTTATTTGAGGCATGAACTTAGATTTATAAAAAATGGTGGGAAAAAAGCCTTTCTTGCA
AAGCAAAAGCATCAATATCATGTATCCTAATGAGAAGACAATATTTATGGTGCCTAATCCAAAAA
GAAAGGAGATTAGTATGAGAATTCAT
Found at i:2406271 original size:158 final size:156
Alignment explanation
Indices: 2405172--2406331 Score: 421
Period size: 157 Copynumber: 7.4 Consensus size: 156
2405162 GTCTTATTTA
*** * * * *
2405172 TGGGAAAAAAGCCTTTCTTGCAAAATGAAAGCATCAATATGATGTATCCTAAAGAGAAGACTATG
1 TGGGAAAAAAGCCTTTCTTGCAAAGCAAAAGCATCAATATCATGTATCCTAATGAGAAGACAATA
* * * * ** * **
2405237 TTTACGGTGCCTAATTTGC-AAAAGAATGGGGATCGGTATGAGTATTCATGTTTACCTTATTTAA
66 TTTATGGTGCCTAA--TCCAAAAAGAAAGGAGATTAGTATGAGAATTCATGTTTGTCTTATTTAA
* * * **
2405301 GAAACAAACTTTGTTTCTATAAAAAACAG
129 GAGACAAACTTTGATT-TATCAAAAATGG
* ** * * * * **
2405330 TGGAAGAAAAAGTGTTTCTTGCGACGCCAAAGCATCAATTTCATGTATCCTAAT--GAAGGGAAT
1 TGGGA-AAAAAGCCTTTCTTGCAAAGCAAAAGCATCAATATCATGTATCCTAATGAGAAGACAAT
* * * * * *
2405393 GTGTT-T-GT-CTCTCAATCTCATAAAGAAAGGAGATT-GTTACGAGGATTGATGATTGTCTTAT
65 AT-TTATGGTGC-CT-AATC-CAAAAAGAAAGGAGATTAG-TATGAGAATTCATGTTTGTCTTAT
* * * *
2405454 TTACGGGATAAACTTTGATTT-TAAGGAAAATAGG
125 TTAAGAGACAAACTTTGATTTATCA--AAAAT-GG
** * * * * * * * **
2405488 -GCAAAGAAAAG-ATTTCCATGCAAAAG-AAAATCATTAATTTCTTTTATCCTAATGAGGGGA-A
1 TGGGAA-AAAAGCCTTT-CTTGC-AAAGCAAAAGCATCAATATCATGTATCCTAATGAGAAGACA
* * * * * * * * * *
2405549 TGTGTTTATAGTGGCTAATCACAAAATGAAA-GATCATTACTA-GA-AA-CCAAGTTTGTCTCAT
63 -ATATTTATGGTGCCTAATC-CAAAAAGAAAGGA-GATTAGTATGAGAATTCATGTTTGTCTTAT
* * * *
2405610 TTGAG-GCACGAACTTAGACTTTATAAAAAATGG
125 TTAAGAG-ACAAACTTTGA-TTTATCAAAAATGG
* * * * * *
2405643 TGGGAAAAAAGCCTTTTTTGCAAAACGAAAGCATCAATATGATGTATCCTGAA-GAGAGGACTAT
1 TGGGAAAAAAGCCTTTCTTGCAAAGCAAAAGCATCAATATCATGTATCCT-AATGAGAAGACAAT
** * * *
2405707 ATTTATGGTGCCTAATTCGGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGT-TATATTTA
65 ATTTATGGTGCCTAA-TCCAAAAAGAAAGGAGATTAGTATGAGAATTCATGTTTGTCT-TATTTA
2405771 AGAGACAAACTTTGATTCTATCAAAAATGG
128 AGAGACAAACTTTGATT-TATCAAAAATGG
** ** * * * * **
2405801 T-GGAAGGAAAAGTGTTTCTTGCAACCCCAAAGTATCAATTTCTTGTATCCTAAT--GAAGGGAA
1 TGGGAA--AAAAGCCTTTCTTGCAAAGCAAAAGCATCAATATCATGTATCCTAATGAGAAGACAA
* * * * * * * *
2405863 TGTGTT-T-GT-CTCTCAATCTCATACAGAAAGCATATT-GTTACGAGAATTGATGCTTGTCTTA
64 TAT-TTATGGTGC-CT-AATC-CAAAAAGAAAGGAGATTAG-TATGAGAATTCATGTTTGTCTTA
* ** *** *
2405924 TTTAAGGGATGAACTTTGATATTAAGGAAAATAG
124 TTTAAGAGACAAACTTTGAT-TTATCAAAAATGG
* * * * * * * **
2405958 -GGTAAAGGAAAG-ATTTCCATGCAAAAG-AAAATCATCAATTTCTTTTATCCTAATGAGGGGA-
1 TGGGAAA--AAAGCCTTT-CTTGC-AAAGCAAAAGCATCAATATCATGTATCCTAATGAGAAGAC
* * * * * * * * *
2406019 ATGTGTTTATAGTGCCTAATTGCAAAATA-AAAGAAGATTATTACT-AGAATCCAAGTTTGTCTC
62 A-ATATTTATGGTGCCTAA-TCCAAAA-AGAAAGGAGATTAGTA-TGAGAATTCATGTTTGTCTT
* * *
2406082 ATTT--GAGGCATGAACTTAGACTTTATAAAAAATGG
123 ATTTAAGAGACA--AACTTTGA-TTTATCAAAAATGG
*
2406117 TGGGAAAAAAGCCTTTCTTGCAAAGCAAAAGCATCAATATGATGTATCCTAATGAGAAGACAATA
1 TGGGAAAAAAGCCTTTCTTGCAAAGCAAAAGCATCAATATCATGTATCCTAATGAGAAGACAATA
* * * *
2406182 TTTATGGTGCCTAATCCACAAAAGAATGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAG
66 TTTATGGTGCCTAATCCA-AAAAGAAAGGAGATTAGTATGAGAATTCATGTTTGTCTTATTTAAG
*
2406247 AGACAAACTTTGATTCTATCAAAAACGG
130 AGACAAACTTTGATT-TATCAAAAATGG
* * * * * *
2406275 T-GGAAGGAAAAACTTTTTCTTGCGACATC-AAAGCATCAATGTCATGTATCTTAATGA
1 TGGGAA--AAAAGC-CTTTCTTGC-AAAGCAAAAGCATCAATATCATGTATCCTAATGA
2406332 ATGGAATGTG
Statistics
Matches: 723, Mismatches: 200, Indels: 156
0.67 0.19 0.14
Matches are distributed among these distances:
154 3 0.00
155 66 0.09
156 60 0.08
157 215 0.30
158 162 0.22
159 159 0.22
160 54 0.07
161 4 0.01
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (156 bp):
TGGGAAAAAAGCCTTTCTTGCAAAGCAAAAGCATCAATATCATGTATCCTAATGAGAAGACAATA
TTTATGGTGCCTAATCCAAAAAGAAAGGAGATTAGTATGAGAATTCATGTTTGTCTTATTTAAGA
GACAAACTTTGATTTATCAAAAATGG
Found at i:2407002 original size:948 final size:942
Alignment explanation
Indices: 2405172--2407633 Score: 3308
Period size: 948 Copynumber: 2.6 Consensus size: 942
2405162 GTCTTATTTA
* * *
2405172 TGGGAAAAAAGCCTTTCTTGCAAAATGAAAGCATCAATATGATGTATCCTAAAGAGAAGACTATG
1 TGGGAAAAAAGCCTTTCTTGC-AAACGAAAGCATCAATATGATGTATCCTAATGAGAAGACAATG
* *** ** **
2405237 TTTACGGTGCCTAATTTGCAAAAGAATGGGGATCGGTATGAGTATTCATGTTTACCTTATTTAAG
65 TTTATGGTGCCTAATCCACAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAG
* * * * * * **
2405302 AAACAAACTTTGTTTCTATAAAAAACAGTGGAA-GAAAAAGTGTTTCTTGCGACGCCAAAGCATC
130 AGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAACTTTTTCTTGCGACATCAAAGCATC
* * * *
2405366 AATTTCATGTATCCTAATGAAGGGAATGTG-TTTGTC-TCTCAATC-TCATAAAGAA-AGGAGAT
195 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCACAATCTTGA-AAAGAATA-GAGA-
* * * * *
2405427 TGTTACGAGGATTGATGATTGTCTTATTTACGGGATAAACTTTGATTTTAAGGAAAATAGGGCAA
257 AGTTACGAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGA-TTTAAGGAAAATAGGGCAA
*
2405492 AGAAAAGATTTCCATGCAAAAGAAAATCATTAATTTCTTTTATCCTAATGAGGGGAATGTGTTTA
321 AGAAAAGATTTCCATGCAAAAGAAAATCATCAATTTC-TTTATCCTAATGAGGGGAATGTGTTTA
* *
2405557 TAGTGGCTAATCACAAAATGA-AAGATCATTACTAGAAA-CCAAGTTTGTCTCATTTGAGGCACG
385 TAGTGCCTAATCACAAAATGAGAAGATCATTACTA-AAATCTAAGTTTGTCTCATTTGAGGCACG
2405620 AACTTAGACTTTATAAAAAATGGTGGGAAAAAAGCCTTTTTTGCAAAACGAAAGCATCAATATGA
449 AACTTAGACTTTATAAAAAATGGTGGGAAAAAAGCCTTTTTTGCAAAACGAAAGCATCAATATGA
* * *
2405685 TGTATCCTGAAGAGAGGACTATATTTATGGTGCCTAATTCGGAAAAGAATGGGGATTAGTATGAG
514 TGTATCCTGAAGAGAAGACTATGTTTATGGTGCCTAATTCAGAAAAGAAT---GATTAGTATGAG
* *
2405750 TATTCATGTTTGTTATATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAGGAAAAGTG
576 TATTCAAGTTTGTTATATTTAAGAGACAAACTTTGAATCTATCAAAAATGGTGGAAGGAAAAGTG
* * * *
2405815 TTTCTTGCAACCCCAAAGTATCAATTTCTTGTATCCTAATGAAGGGAATGTGTTTGTCTCTCAAT
641 TTTCTTGCAACACCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGTGTTTGGCTCTCAAT
* * * *
2405880 CTCATACAGAAAGCATATTGTTACGAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATA
706 CTCATAAAGAAAGCAGATTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATA
** * * *
2405945 TTAAGGAAAATAGGGTAAAGGAAAGATTTCCATGCAAAAGAAAATCATCAATTTCTTTTATCCTA
771 TTAAGGAAAATAGGACAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATGTCATTTATCCTA
* * * * *** *
2406010 ATGAGGGGAATGTGTTTATAGTGCCTAATTGCAAAATAAAAGAAGATTATTACTAGAATCCAAGT
836 ATGAGGAGAATGAGTTTATAGTACCAAACCACAAAATAAAAGAAGATCATTACTAGAATCCAAGT
2406075 TTGTCTCATTTG-AG-GCATGAACTTAGACTTTATAAAAAATGG
901 TTGTCTCATTTGAAGCGCA--AACTTAGACTTTATAAAAAATGG
* *
2406117 TGGGAAAAAAGCCTTTCTTGCAAAGCAAAAGCATCAATATGATGTATCCTAATGAGAAGACAATA
1 TGGGAAAAAAGCCTTTCTTGCAAA-CGAAAGCATCAATATGATGTATCCTAATGAGAAGACAATG
*
2406182 TTTATGGTGCCTAATCCACAAAAGAATGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAG
65 TTTATGGTGCCTAATCCACAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAG
2406247 AGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAACTTTTTCTTGCGACATCAAAGCATC
130 AGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAACTTTTTCTTGCGACATCAAAGCATC
* *
2406312 AATGTCATGTATCTTAATGAATGGAATGTGTTTTGGCTTCACAATCTTGAAAAGAATAGAGACAG
195 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCACAATCTTGAAAAGAATAGAGA-AG
* * * * *
2406377 TTACGAGAATCGATTCTTGTCTTATTTAAGGTATGAACATTGATTTAAAGGAAAAAAAGGGCAAA
259 TTACGAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTT-AAGG-AAAATAGGGCAAA
* * *
2406442 GAAAAGATTCCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGTGAATGTGTTTAT
322 GAAAAGATTTCCATGCAAAAGAAAATCATCAATTTC-TTTATCCTAATGAGGGGAATGTGTTTAT
* * * * *
2406507 AGTGCCTAATCCCAAAATGAGTGAAGATCTTTACTAAAATCTATGTTTGTCTCTTTTGGGGCACG
386 AGTGCCTAATCACAAAATGA--GAAGATCATTACTAAAATCTAAGTTTGTCTCATTTGAGGCACG
* * * * ** * *
2406572 AACTTAGACTTTACAAAAAATGATAGGAAAAAAGCCTTTCTTGTGAAATGAAAGCCTCAATATGA
449 AACTTAGACTTTATAAAAAATGGTGGGAAAAAAGCCTTTTTTGCAAAACGAAAGCATCAATATGA
* *
2406637 TGTATCATGAAGAGAAGACTATGTTTATGGTACCTAA-TCTAG-AAAGAAT-ATTAGTAT-AGGT
514 TGTATCCTGAAGAGAAGACTATGTTTATGGTGCCTAATTC-AGAAAAGAATGATTAGTATGA-GT
* * *
2406698 ATTCAAGTTTGTCT-TTTTTAAGAGTCAAACTTTGAATCTATCAAAAATGGTGGAAGGAAAAGTT
577 ATTCAAGTTTGT-TATATTTAAGAGACAAACTTTGAATCTATCAAAAATGGTGGAAGGAAAAGTG
* * * *
2406762 TTTCTTGCAACACCAAAGCGTCAATTTCATGTATCCTAATGAATGGAATGTGTTTTGGCTCTGAT
641 TTTCTTGCAACACCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGTG-TTTGGCTCTCAA
* * *
2406827 TCTCATAAAGAATGGAGATTATTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGAT
705 TCTCATAAAGAAAGCAGATTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGAT
*
2406892 -TTAAAGGAAAATAGGACAAAGAAAAGATTTCCATGCAAAAGAAAATCATCACTGTCATTTATCC
770 ATT-AAGGAAAATAGGACAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATGTCATTTATCC
* * *
2406956 TAATGTGGAGAATGAGTTTATAGTACCAAACCACAAAATTAAAGAAGATCATTACTAGAATCCAT
834 TAATGAGGAGAATGAGTTTATAGTACCAAACCACAAAATAAAAGAAGATCATTACTAGAATCCAA
* * *
2407021 GTTTGTTTCTTTTGAAGCGCAAACTTAGACTTTGTAAAAAATGG
899 GTTTGTCTCATTTGAAGCGCAAACTTAGACTTTATAAAAAATGG
* * *
2407065 TGAGAAAAAAGCCTTTCTTGCGAAACGAAAGCGTCAATATGATGTATCCTAATGAGAAGACATTG
1 TGGGAAAAAAGCCTTTCTTGC-AAACGAAAGCATCAATATGATGTATCCTAATGAGAAGACAATG
** * * * *
2407130 TTTATGGCACCTAATCCAAAAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTTTTATTTATG
65 TTTATGGTGCCTAATCCACAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAG
*
2407195 AGACAAAACTTTGATTCTATCAAAAACGGTGGAAGG-AAAATTTTTTCTTGCGACATCAAAGCAT
130 AGAC-AAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAACTTTTTCTTGCGACATCAAAGCAT
* * *
2407259 CAATGTCATGTATCCTAAAGAAGGGAATGTGTTTTGGCTTCACAAT-TTGAATAGAACTA-ACAA
194 CAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCACAATCTTGAAAAGAA-TAGAGAA
* *
2407322 TGTTACGAGAATTGATGCTCGTCTTATTTAAGGGATGAACTTTGATATTAAGGAAGATAGGGCAA
258 -GTTACGAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGAT-TTAAGGAAAATAGGGCAA
* * *
2407387 AGGAAAGATTTCCATGCGAAAGCAAATCATCAATTTCTATTATCCTAATGAGGGGAATGTGTTTA
321 AGAAAAGATTTCCATGCAAAAGAAAATCATCAATTTCT-TTATCCTAATGAGGGGAATGTGTTTA
* ** * * *
2407452 TAGTGCCCAATTGCAAAATGAAAGAAGATCATTACTAGAAT-TCAAGTTTATCTCATTTGAGACA
385 TAGTGCCTAATCACAAAATG--AGAAGATCATTACTAAAATCT-AAGTTTGTCTCATTTGAGGCA
2407516 CGAACTTAGACTTTATAAAAAATGGTGGGAAAAAAGCCTTTTTTGCAAAACGAAAGCATCAATAT
447 CGAACTTAGACTTTATAAAAAATGGTGGGAAAAAAGCCTTTTTTGCAAAACGAAAGCATCAATAT
* * * *
2407581 GTTGTATCCT-AATGAGAAGACAATGTTTTTGGTGCCTAATTCGGAAAAGAATG
512 GATGTATCCTGAA-GAGAAGACTATGTTTATGGTGCCTAATTCAGAAAAGAATG
2407634 GGGATTAGTA
Statistics
Matches: 1326, Mismatches: 159, Indels: 61
0.86 0.10 0.04
Matches are distributed among these distances:
944 3 0.00
945 145 0.11
946 261 0.20
947 188 0.14
948 461 0.35
949 129 0.10
950 3 0.00
951 12 0.01
952 124 0.09
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.31
Consensus pattern (942 bp):
TGGGAAAAAAGCCTTTCTTGCAAACGAAAGCATCAATATGATGTATCCTAATGAGAAGACAATGT
TTATGGTGCCTAATCCACAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGA
GACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAACTTTTTCTTGCGACATCAAAGCATCA
ATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCACAATCTTGAAAAGAATAGAGAAGTT
ACGAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAGGAAAATAGGGCAAAGAAA
AGATTTCCATGCAAAAGAAAATCATCAATTTCTTTATCCTAATGAGGGGAATGTGTTTATAGTGC
CTAATCACAAAATGAGAAGATCATTACTAAAATCTAAGTTTGTCTCATTTGAGGCACGAACTTAG
ACTTTATAAAAAATGGTGGGAAAAAAGCCTTTTTTGCAAAACGAAAGCATCAATATGATGTATCC
TGAAGAGAAGACTATGTTTATGGTGCCTAATTCAGAAAAGAATGATTAGTATGAGTATTCAAGTT
TGTTATATTTAAGAGACAAACTTTGAATCTATCAAAAATGGTGGAAGGAAAAGTGTTTCTTGCAA
CACCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGTGTTTGGCTCTCAATCTCATAAAGA
AAGCAGATTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATATTAAGGAAAA
TAGGACAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATGTCATTTATCCTAATGAGGAGAA
TGAGTTTATAGTACCAAACCACAAAATAAAAGAAGATCATTACTAGAATCCAAGTTTGTCTCATT
TGAAGCGCAAACTTAGACTTTATAAAAAATGG
Found at i:2409330 original size:12 final size:11
Alignment explanation
Indices: 2409308--2409383 Score: 61
Period size: 12 Copynumber: 6.9 Consensus size: 11
2409298 AGAGAAAGAA
*
2409308 GAGAGAGGAGG
1 GAGATAGGAGG
2409319 GATGATAGGAGG
1 GA-GATAGGAGG
*
2409331 AGAGACAGGA--
1 -GAGATAGGAGG
*
2409341 GAGATAGTA--
1 GAGATAGGAGG
2409350 GAGATAGGAGG
1 GAGATAGGAGG
2409361 GATGATAGGAGG
1 GA-GATAGGAGG
2409373 AGAGATAGGAG
1 -GAGATAGGAG
2409384 AGATAATAAA
Statistics
Matches: 54, Mismatches: 5, Indels: 11
0.77 0.07 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.07
12 31 0.57
13 4 0.07
ACGTcount: A:0.39, C:0.01, G:0.49, T:0.11
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:2409342 original size:9 final size:9
Alignment explanation
Indices: 2409328--2409388 Score: 56
Period size: 9 Copynumber: 7.1 Consensus size: 9
2409318 GGATGATAGG
*
2409328 AGGAGAGAC
1 AGGAGAGAT
2409337 AGGAGAGAT
1 AGGAGAGAT
*
2409346 AGTAGAGAT
1 AGGAGAGAT
*
2409355 AGGAGGGAT
1 AGGAGAGAT
* *
2409364 --GATAG-G
1 AGGAGAGAT
2409370 AGGAGAGAT
1 AGGAGAGAT
2409379 AGGAGAGAT
1 AGGAGAGAT
2409388 A
1 A
2409389 ATAAAGAGAG
Statistics
Matches: 40, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
7 3 0.08
8 4 0.10
9 33 0.82
ACGTcount: A:0.43, C:0.02, G:0.44, T:0.11
Consensus pattern (9 bp):
AGGAGAGAT
Found at i:2409359 original size:42 final size:42
Alignment explanation
Indices: 2409298--2409417 Score: 177
Period size: 42 Copynumber: 2.9 Consensus size: 42
2409288 TAGCCCTCAA
* *
2409298 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
2409340 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGATAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* * *
2409382 AGAGATAATAAAGAGAGGAGGGATGACAGGAGGAGA
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGA
2409418 AGAGAAGAAG
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.44, C:0.02, G:0.45, T:0.09
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:2418546 original size:42 final size:42
Alignment explanation
Indices: 2418491--2418609 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
2418481 TTCTTCTCTC
* *
2418491 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
2418533 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
2418575 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
2418610 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:2418550 original size:12 final size:11
Alignment explanation
Indices: 2418524--2418599 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
2418514 TCTATTATCT
*
2418524 CTCCTGTCTCTC
1 CTCCTATCTC-C
2418536 CTCCTATCATCC
1 CTCCTATC-TCC
2418548 CTCCTATCT--
1 CTCCTATCTCC
*
2418557 CTACTATCT--
1 CTCCTATCTCC
*
2418566 CTCCTGTCTCTC
1 CTCCTATCTC-C
2418578 CTCCTATCATCC
1 CTCCTATC-TCC
*
2418590 CTCCTCTCTC
1 CTCCTATCTC
2418600 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:2418551 original size:24 final size:24
Alignment explanation
Indices: 2418515--2418600 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
2418505 CCTCCTCTCT
* *
2418515 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
2418539 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
2418560 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
2418581 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
2418601 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:2418575 original size:18 final size:18
Alignment explanation
Indices: 2418506--2418576 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
2418496 CCTGTCATCC
* *
2418506 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
2418524 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
2418546 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
2418566 CTCCTGTCTCT
1 CTCCTGTCTCT
2418577 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:2421191 original size:42 final size:42
Alignment explanation
Indices: 2421136--2421254 Score: 186
Period size: 42 Copynumber: 2.8 Consensus size: 42
2421126 TTCTTCTCTC
* *
2421136 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
2421178 CTCCTCCTATCATCCCTCCTAC-CTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCT-CTCTCTACTATCTCTCCTGTCT
* *
2421220 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
2421255 TTGCGGGCTA
Statistics
Matches: 71, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
41 1 0.01
42 69 0.97
43 1 0.01
ACGTcount: A:0.08, C:0.47, G:0.03, T:0.42
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:2421196 original size:24 final size:24
Alignment explanation
Indices: 2421160--2421245 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
2421150 CCTCCTCTCT
* *
2421160 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
2421184 CTATCATCCCTCCT-AC-CT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
2421205 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
2421226 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
2421246 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 5 0.10
19 1 0.02
20 3 0.06
21 14 0.29
22 3 0.06
23 1 0.02
24 22 0.45
ACGTcount: A:0.10, C:0.47, G:0.02, T:0.41
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:2421229 original size:21 final size:21
Alignment explanation
Indices: 2421164--2421230 Score: 70
Period size: 21 Copynumber: 3.2 Consensus size: 21
2421154 CTCTCTCTAT
2421164 TATCTCTCCTGTCTCTCCTCC
1 TATCTCTCCTGTCTCTCCTCC
2421185 TATCATC-CC--TC-CTACCTCTAC
1 TATC-TCTCCTGTCTCT-CCTC--C
2421206 TATCTCTCCTGTCTCTCCTCC
1 TATCTCTCCTGTCTCTCCTCC
2421227 TATC
1 TATC
2421231 ATCCCTCCTC
Statistics
Matches: 38, Mismatches: 0, Indels: 16
0.70 0.00 0.30
Matches are distributed among these distances:
18 2 0.05
19 6 0.16
20 2 0.05
21 18 0.47
22 2 0.05
23 6 0.16
24 2 0.05
ACGTcount: A:0.10, C:0.46, G:0.03, T:0.40
Consensus pattern (21 bp):
TATCTCTCCTGTCTCTCCTCC
Found at i:2429061 original size:449 final size:460
Alignment explanation
Indices: 2427731--2429352 Score: 1644
Period size: 474 Copynumber: 3.5 Consensus size: 460
2427721 GATGAACTTT
* * * * * *
2427731 GATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC-TTGCAAAAGAAAATCATTAATTTCTTTTA
1 GATTTAAAGGAAAATAGGGCAAAGAAAATA-TTCCAATGCAAAAGAAAATCATCAATATC-ATTA
* * * * * * *
2427795 TCCTAATGAGGGGAATGTGTTTATTGTGGCCAATCGCAAAATGAAAGAAGATCATTACTAGAAAC
64 TCCTAATGAGGAGAATGTGTTTATAGT-GCCATTCACAAAATGAATGAAGATCATTGCTAGAATC
* * ** * *
2427860 CAAGTTTGTCTCATTTGAGGCATGAACTTAGACTTTATAAAAAATGGTGGGAAAAAAGCCTTTTT
128 TAAGTTTGTCTCATTTGAAGCACAAACTTAGACTTTA-CAAAAATGGTGGGAAAAAAGCCTTTCT
* * *
2427925 TGCAAAACGAAAGCATCAATATGATGTATCCTAAAGAGAGGACTATATTTATGGTGCCTAAT-TC
192 TGCAAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACAATATTTACGGTGCCTAATCT-
* * * **
2427989 GGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTAATATTTAAGAGACAAACTTTGATTCT
256 GAAAAAGAATGGGGATTAGTATGAGTATCCATATTTGTCTTATTTAAGAGACAAACTTTGATTCT
* * * * * *
2428054 ATCAAAAAATGGTGGAAGG-AAAAGTGTTTCTTGCAACCTCAAAGTATCAATTTCATGTACCCTA
321 ATC-AAAAACGGTGGAAGGAAAAAGTTTTTCTTGCAACATCAAAGCATCAATGTCATGTATCCTA
* * * * * * * *
2428118 ATGAAGGGAATGTGTTTGTCTGT--CAATCTCATAAAGAAAGGAGATTGTTACGAGAATTGATGC
385 ATGAAGGGAAAGTGTTTGGCT-TCACAATAT--TGAAG-AACGAGA-----A-TATAA-CGATG-
* * * *
2428181 TCGTCTTATTTAAGGGATGAACTTT
438 T-GTC-TAATTAAGGGATAAACATC
* * *
2428206 GATATT-AAGGAAAATAGGGCAAAGCAAAGAT-TTCC-ATGCGAAAGCAAATCATCAATTTCTAT
1 GAT-TTAAAGGAAAATAGGGCAAAG-AAA-ATATTCCAATGCAAAAGAAAATCATCAATATC-AT
* * * *
2428268 TATCCTAATGAGGGGAATGTGTTTATAGTGCCCAATT-ACAAAATAAAAGAAGATCATTACTAGA
62 TATCCTAATGAGGAGAATGTGTTTATAGTG-CC-ATTCACAAAATGAATGAAGATCATTGCTAGA
* * *
2428332 AT-TCAAGTTTATCTCATTTG-AGACACGAACTTAGACTTTATAAAAAATGGTGGG-AAAAAGCC
125 ATCT-AAGTTTGTCTCATTTGAAG-CACAAACTTAGACTTTA-CAAAAATGGTGGGAAAAAAGCC
* * * *
2428394 TTTTTTGCAAAACGAAAGCATCAATATGTTGTATCCTAATGAGAAGACAATGTTTACGGTGCCTA
187 TTTCTTGCAAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACAATATTTACGGTGCCTA
* * * *
2428459 ATCTGCAAAAGAATGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGA
252 ATCTGAAAAAGAATGGGGATTAGTATGAGTATCCATATTTGTCTTATTTAAGAGACAAACTTTGA
2428524 TTCTATCAAAAACGGTGGAAGGAAAAAGTTTTTCTTGCAACATCAAAGCATCAATGTCATGTATC
317 TTCTATCAAAAACGGTGGAAGGAAAAAGTTTTTCTTGCAACATCAAAGCATCAATGTCATGTATC
* *
2428589 CTAATGAAGGGAATGTGTTTGGCTTCACAATCTTG-A-AA-G-G-A-AT-A-GA-G-G-C-AATT
382 CTAATGAAGGGAAAGTGTTTGGCTTCACAATATTGAAGAACGAGAATATAACGATGTGTCTAATT
* *
2428642 AAGGTATGAACATC
447 AAGGGATAAACATC
*
2428656 GTTTTAAAGGAAAATA-GGCAAAGAAAATATTCCAATGCAAAAGAAAATCATCAATATCATTCAT
1 GATTTAAAGGAAAATAGGGCAAAGAAAATATTCCAATGCAAAAGAAAATCATCAATATCATT-AT
* * * * * *
2428720 CCTAACGAGGAGAATATTTTTACAGAGCCTATTCGCAAAATGAATGAAGATCATTGCTAGAATCT
65 CCTAATGAGGAGAATGTGTTTATAGTGCC-ATTCACAAAATGAATGAAGATCATTGCTAGAATCT
* *
2428785 AAGTTTGTCTCATTTGAAGCACAAACATAGACTTTACCAAAATGGTGGGAAAAAAGCCTTTCTTG
129 AAGTTTGTCTCATTTGAAGCACAAACTTAGACTTTACAAAAATGGTGGGAAAAAAGCCTTTCTTG
* * * * ** * * * *
2428850 CTAAATGAAGGCATCAAAATGATGTATCCTAAAGAGAAGATTATATTTATGGTTCGTTATCCT-A
194 CAAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACAATATTTACGGTGCCTAAT-CTGA
* *
2428914 AAAAGAATGGGGGTTAGTATGAGTATCCATATTTGTCTTGTTTAAGAGACAAACTTTGATTCTAT
258 AAAAGAATGGGGATTAGTATGAGTATCCATATTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * *
2428979 CAAAATCGGTGGAAGG-AAAAGTTTTTCTTG-ATACATCAAAGCATCAATTTCATGTCTCCTAAT
323 CAAAAACGGTGGAAGGAAAAAGTTTTTCTTGCA-ACATCAAAGCATCAATGTCATGTATCCTAAT
2429042 GAAGGGAAAGTGTTTTGGCTTCACAATATTGAAAAGAACTGAGACAGTTATGAGAATCGATGCTT
387 GAAGGGAAAGTG-TTTGGCTTCACAATATTG--AAGAAC-GAGA-A--TAT---AA-CGATG--T
** * *
2429107 GTCTTTTTTAAGGGATAAACTTT
439 GTC-TAATTAAGGGATAAACATC
* * * *
2429130 GATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCAACGCAAAAGAAAATCACCAATATCATTTAT
1 GATTTAAAGGAAAATAGGGCAAAGAAAATATTCCAATGCAAAAGAAAATCATCAATATCA-TTAT
* * *
2429195 CCTAATGAGGAGAATGCGTTTATAGTGCCGTTCACAAAATGAATGAAGATCATTGCTAGAATCCA
65 CCTAATGAGGAGAATGTGTTTATAGTGCCATTCACAAAATGAATGAAGATCATTGCTAGAATCTA
* * *
2429260 AGTTTGTCTCATTTGAAGCAAAAACTTAGACTTTACAAAAAAATGGTAGGAAAAAAGCTTTTCTT
130 AGTTTGTCTCATTTGAAGCACAAACTTAGACTTTAC--AAAAATGGTGGGAAAAAAGCCTTTCTT
*
2429325 GCGAAACGAAAGCATCAATATGATGTAT
193 GCAAAACGAAAGCATCAATATGATGTAT
2429353 TCGAAAGCAT
Statistics
Matches: 984, Mismatches: 112, Indels: 101
0.82 0.09 0.08
Matches are distributed among these distances:
447 3 0.00
448 80 0.08
449 261 0.27
450 31 0.03
452 2 0.00
453 3 0.00
455 1 0.00
456 2 0.00
457 2 0.00
458 1 0.00
459 1 0.00
460 1 0.00
461 2 0.00
462 1 0.00
465 1 0.00
467 2 0.00
468 2 0.00
469 1 0.00
470 2 0.00
471 1 0.00
472 2 0.00
473 16 0.02
474 289 0.29
475 219 0.22
476 57 0.06
477 1 0.00
ACGTcount: A:0.38, C:0.13, G:0.19, T:0.30
Consensus pattern (460 bp):
GATTTAAAGGAAAATAGGGCAAAGAAAATATTCCAATGCAAAAGAAAATCATCAATATCATTATC
CTAATGAGGAGAATGTGTTTATAGTGCCATTCACAAAATGAATGAAGATCATTGCTAGAATCTAA
GTTTGTCTCATTTGAAGCACAAACTTAGACTTTACAAAAATGGTGGGAAAAAAGCCTTTCTTGCA
AAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACAATATTTACGGTGCCTAATCTGAAAA
AGAATGGGGATTAGTATGAGTATCCATATTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAA
AAACGGTGGAAGGAAAAAGTTTTTCTTGCAACATCAAAGCATCAATGTCATGTATCCTAATGAAG
GGAAAGTGTTTGGCTTCACAATATTGAAGAACGAGAATATAACGATGTGTCTAATTAAGGGATAA
ACATC
Found at i:2430188 original size:33 final size:33
Alignment explanation
Indices: 2430135--2430197 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
2430125 AGAAGCAATG
*
2430135 TATCGATACAATTCATCATGTATCAATACATTA
1 TATCGATACAATTCACCATGTATCAATACATTA
* *
2430168 TATCGATACAATGT-ACCATGTCTCGATACA
1 TATCGATACAAT-TCACCATGTATCAATACA
2430198 AACAGTGGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
33 25 0.96
34 1 0.04
ACGTcount: A:0.37, C:0.21, G:0.10, T:0.33
Consensus pattern (33 bp):
TATCGATACAATTCACCATGTATCAATACATTA
Found at i:2430252 original size:20 final size:20
Alignment explanation
Indices: 2430227--2430301 Score: 64
Period size: 19 Copynumber: 3.7 Consensus size: 20
2430217 CTACCAGTTT
* **
2430227 CATGTATCGATACAATTGTC
1 CATGTATCGATACAAATGAA
*
2430247 CATGTATCAATA-AAATGAA
1 CATGTATCGATACAAATGAA
*
2430266 CATGTATCGATACACAAAGCATA
1 CATGTATCGATACA-AATG-A-A
2430289 -ATGTATCGATACA
1 CATGTATCGATACA
2430302 TTTGGGTGTG
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
19 15 0.33
20 12 0.27
21 3 0.07
22 14 0.31
23 1 0.02
ACGTcount: A:0.41, C:0.17, G:0.13, T:0.28
Consensus pattern (20 bp):
CATGTATCGATACAAATGAA
Found at i:2439731 original size:416 final size:415
Alignment explanation
Indices: 2438984--2439773 Score: 1258
Period size: 416 Copynumber: 1.9 Consensus size: 415
2438974 GCTTAAATTG
* *
2438984 GAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTA
1 GAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCATATTTAAAAGACAAACTTTGACTCTA
** * * * *
2439049 TCAAAAACGGTGGAAGGAAAAGTGTTTCTTATGACCCCAAAGCATCAATTTCATGTATTCTAATG
66 TCAAAAACGGTGGAAGGAAAAGTGTTTCTTACAACACCAAAGAATCAATTTCATGTATCCTAAGG
* * ** *
2439114 AAAGGAATGTGTTTGTCTCCCAATCTCATAAAGAAAGGAGATTGTTATGAGAATTGATGCTTGTT
131 AAAGGAATGTGTTTGGCTCCCAATCTCATAAAGAAAGGAGATTGTTACGAGAAACGATGCTTGTC
* *
2439179 ATCTTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAATTATTTCCATGCAAAAGA
196 ATCTTCAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAATATTTCCATGCAAAAGA
* * * *
2439244 AAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAGTGAAT
261 AAATCATCAATATCATTTATCCTAATGAGGAGAATGTATTTATAATGCCTAATCACAAAATGAAA
2439309 GAAGATCATTACTAAAATCCAAGTTTATCTCATTTGAGGCACGAACTTAGACCTTACAAAGAGAA
326 GAAGATCATTACTAAAATCCAAGTTTATCTCATTTGAGGCACGAACTTAGACCTTACAAAGAGAA
2439374 GGCTATGTTTATATTGCCTTATCCT
391 GGCTATGTTTATATTGCCTTATCCT
2439399 GAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCATA-TTAAAGAGACAAACTTTGACTCT
1 GAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCATATTTAAA-AGACAAACTTTGACTCT
* * *
2439463 ATCAAAAACGGTGGAAGGAAATGTTTTTCTTGCAACACCAAAGAATCAATTTCATGTATCCTAAG
65 ATCAAAAACGGTGGAAGGAAAAGTGTTTCTTACAACACCAAAGAATCAATTTCATGTATCCTAAG
* ** * * *
2439528 GAAGGGAATGTGTTTTGGCTCTGATTCTCGTAAAGAATGGAGATTGTTACGAGAAACGATGCTTG
130 GAAAGGAATGTG-TTTGGCTCCCAATCTCATAAAGAAAGGAGATTGTTACGAGAAACGATGCTTG
*
2439593 TCATCTTCAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAATATTTCCATGCAAAA
194 TCATCTTCAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAATATTTCCATGCAAAA
* * *
2439658 GAAAATCATCAATTTCTTTTATCCTAATGAGGGGAATGTATTTATAATGCCTAATCACAAAATGA
259 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTATTTATAATGCCTAATCACAAAATGA
*
2439723 AAGAAGATCATTACTAGAATCCAAGTTTATCTCATTTGAGGCACGAACTTA
324 AAGAAGATCATTACTAAAATCCAAGTTTATCTCATTTGAGGCACGAACTTA
2439774 AACTTTATAA
Statistics
Matches: 340, Mismatches: 33, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
414 5 0.01
415 123 0.36
416 212 0.62
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.31
Consensus pattern (415 bp):
GAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCATATTTAAAAGACAAACTTTGACTCTA
TCAAAAACGGTGGAAGGAAAAGTGTTTCTTACAACACCAAAGAATCAATTTCATGTATCCTAAGG
AAAGGAATGTGTTTGGCTCCCAATCTCATAAAGAAAGGAGATTGTTACGAGAAACGATGCTTGTC
ATCTTCAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAATATTTCCATGCAAAAGA
AAATCATCAATATCATTTATCCTAATGAGGAGAATGTATTTATAATGCCTAATCACAAAATGAAA
GAAGATCATTACTAAAATCCAAGTTTATCTCATTTGAGGCACGAACTTAGACCTTACAAAGAGAA
GGCTATGTTTATATTGCCTTATCCT
Found at i:2440748 original size:475 final size:476
Alignment explanation
Indices: 2439366--2446455 Score: 8606
Period size: 475 Copynumber: 15.0 Consensus size: 476
2439356 TAGACCTTAC
* * ** * *
2439366 AAAGAGAAGGCTATGTTTATATTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATG
1 AAAGAGAAGACAATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATG
* * * *
2439431 TTTGTCATATTAAAGAGACAAACTTTGACTCTATCAAAAACGGTGGAAGGAAATGTTTTTCTTGC
66 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGC
* * * * * ** * * *
2439496 AACACCAAAGAATCAATTTCATGTATCCTAAGGAAGGGAATGTGTTTTGGC-TCTGATTCTCGTA
131 GACATCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCACAATCTTGAA
** * * * * *
2439560 AAGAA-TGGAGATTGTTACGAGAAACGATGCTTGTCATCTTCAAGGGATGAACTTTGATTTTAAG
196 AAGAACT-GAGACAGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAG
* * * *
2439624 GAAAATAGGGCAAAGAAAATATTTCCATGCAAAAGAAAATCATCAATTTCTTTTATCCTAATGAG
260 GAAAATA-GGCAAAGAAAAGATTTCAATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAG
* * * * * *
2439689 GGGAATG-TATTTATAATGCCTAATCACAAAATGAAAGAAGATCATTACTAGAATCCAAGTTTAT
324 GAGAATGCTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACGTTTGT
* * * *
2439753 CTCATTTGAGGCACGAACTTAAACTTTATAAAAAATGGTGGGAAAAAAGCCTGTT-TTGCAAAAC
389 CTCATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCCT-TTCTTGCGAAAT
2439817 GAAAGCATCAAT-TGATGTATCCT
453 GAAAGCATCAATATGATGTATCCT
* * ** *
2439840 AATGAGAAGACAATATTTATGGTGCCTAATCCGGAAAAGAATAGGGATTAGTATGAGTATTCATG
1 AAAGAGAAGACAATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATG
* * *
2439905 TTTGTCTTATTTAAGAGTCAAACTTTGATTCTATCAAAAATGGTGGAAGGAAAAGTTATTCTTGC
66 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGC
*
2439970 GACATCAAAGCATCAATGTCATGCATCCTAATGAA-GGAAT-TGTGTTTGGCTTCA-AATCTTGA
131 GACATCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGT-TTTGGCTTCACAATCTTGA
* * * * * * *
2440032 AAAGAA-TAGAGGCAGTTATGAGAATCGATTCTTGTCTTGTTTAAGGTATGAAC-ATCATTTTAA
195 AAAGAACT-GAGACAGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGA-TTTAA
* *
2440095 AGGAAAATAGGCAAAGAAAAGATTCCAATGCAAAAGAAAATCATTAATATCATTTATCCTAATGA
258 AGGAAAATAGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA
* * * * * * *
2440160 GGAGAAT-ATGTTTATAGTGCCTATTCATAAAATGAATGAAGATCTTTGCTAGAGTCCAAGTTTG
323 GGAGAATGCTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACGTTTG
* * * * * *
2440224 TCTCTTTTGAAGCGCAAACTTAGACTTTATAAAAAATGGTGGGAAAAAAGCCTTTCTTGCGAAAG
388 TCTCATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTGCGAAAT
*
2440289 GAAAGCATTAATATGATGTATCCT
453 GAAAGCATCAATATGATGTATCCT
** ** * * * *
2440313 AAAGAGAAGATTATGTTTA-GGTGTGTTATCCTAAAAAGAATGGGGGTTAGTATGAGTATCCATA
1 AAAGAGAAGACAATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATG
* * * * * *
2440377 TATGTCTTGTTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAATGAAAGGTATTTCTTAC
66 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGC
* * * * * * *
2440442 GGCATCAAAGCATCAATTTCATGTCTCCTAATGAAGAGAATGTATTTTGGCTTCACAATTTTCAA
131 GACATCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCACAATCTTGAA
*
2440507 AAGAACTGAGACAGTTACGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTAAAGG
196 AAGAACTGAGACAGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGG
* *
2440572 AAAATAGAGCAAAGAAAAGATTTCAATCCAAAAGAAAATCATCAATATCATTTATCCTAATAAGG
261 AAAATAG-GCAAAGAAAAGATTTCAATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGG
* * * *
2440637 AGAATGCT-TTTATAGTACCAAATCACAAAATGAATGAAGATCATTTCTAGAATCCACGTTTGTT
325 AGAATGCTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACGTTTGTC
* ** **
2440701 TCATTTGAGGCACGAACCTAGACTTTGA-AAAATTTGGTGGGAAAAAAGCCTTTCTTTTGAAATG
390 TCATTTGAGGCACGAACTTAGACTTT-ACAAAAAATGGTGGGAAAAAAGCCTTTCTTGCGAAATG
*
2440765 AAAGCATCAATACGATGTATCCT
454 AAAGCATCAATATGATGTATCCT
* * * * * *
2440788 AAAGAGAAGACTATGATTATGTTGCCTTATCCTGAAAAGAATGTGGATTAGTATGAGTATTCATG
1 AAAGAGAAGACAATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATG
* * * * *
2440853 TTTGTCATATTAAAGAGAGAAACTTTGATTCTATAAAAAACGGTGGAAGGAAAAGTATTTT-TTA
66 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGT-TTTTCTTG
* * * * * *
2440917 CGACAACAAAGAATCAATTTCATGTATCCTAAGGAAGGGAATGTGTTTTGGC-TC-CGAT-TCTC
130 CGACATCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCACAATCT-TG
** * * * *
2440979 ATAAAGAA-TAGAGATTGTTATGAGAAAT-GATGCTTGTCATCTTTAAGGGATGAGCTTTGATTT
194 A-AAAGAACT-GAGACAGTTACGAG-AATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTT
* * *
2441042 AAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAAACATTAATATCATTTATCCTAA
256 AAAGGAAAATA-GGCAAAGAAAAGATTTCAATGCAAAAGAAAATCATCAATATCATTTATCCTAA
* * *
2441107 AGAGGAGAATG-TGTTTATAGTACC-ATATCACAAAATGAATGAAGATCATTACTAGAATCCAAG
320 TGAGGAGAATGCTGTTTATAGTGCCTA-ATCACAAAATGAATGAAGATCATTACTAGAATCCACG
* * * *
2441170 TTTGTCTCATTTGGGGCACGAACTTAGACTATACAAAAAATGGTAGGAAAAAAGCCTTTTTTGCG
384 TTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTGCG
*
2441235 AAATGAAAGCATCAATATTATGTATCCT
449 AAATGAAAGCATCAATATGATGTATCCT
* * * *
2441263 AAAGAGAAGACTAT-TTTATGGTGCCTAAT-TTGGAAAAGAATGGGGATTAGTATGAGTATTAAT
1 AAAGAGAAGACAATGTTTATGGTGCCTAATCCT-AAAAAGAATGGGGATTAGTATGAGTATTCAT
* * *
2441326 GTTTATCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAGGAAAAGTGTTTCTTG
65 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTG
* ** * * * * *
2441391 TGACCCCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGTG-TTTGTC-TCCCTATC-TCA
130 CGACATCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCACAATCTTGA
** * ** * * * * * * * * *
2441453 TAAAGAAAGGATATTGGTACGAGGATTGATGCTTGTCTTATTCAAGGTATGATCATCGTTTTAAA
195 -AAAGAACTGAGACAGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAA
* *
2441518 GGAAAATAGGCAAAGAAAAGATTCCAATGCAAATGAAAATCATCAATATCATTTATCCTAATGAG
259 GGAAAATAGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAG
* * * * * *
2441583 GAGAAT-ATGTTTATATTGCCTATTCACAAAATGAATGAAGGTCATTACTAGAATCCAAGTTTCT
324 GAGAATGCTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACGTTTGT
* * * * *
2441647 CTCATTTGAAGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCTTTTCCTGTGAAACG
389 CTCATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTGCGAAATG
2441712 AAAGCATCAATATGATGTATCCT
454 AAAGCATCAATATGATGTATCCT
* ** * * * *
2441735 AAAGAGAGGATTATGTTTATGGTGCATTATCCTGAAAAGAATGGGGATTAGTATGAGTATCCATG
1 AAAGAGAAGACAATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATG
* * *
2441800 TTTGTCTTGTTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAA-G----G-------TGT
66 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGC
** * * * * *
2441853 GACCCCAAAGCATCAATTTCATGTATCCTAATGAGGGGAATGTG-TTTGTCTCCA-AATC-TCAT
131 GACATCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCACAATCTTGA-
** *** * * * * * *
2441915 AAAGAAAGGAGATTTTTACGAGAATTGATGCTTATCTTATTTGAGGGATAAATTTTGATTTTAAG
195 AAAGAACTGAGACAGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAG
* *
2441980 GAAAATAGGGAAAAGAAAAGATTTCAATGCATAAGAAAATCATCAATATCATTTATCCTAATGAG
260 GAAAATA-GGCAAAGAAAAGATTTCAATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAG
* * *
2442045 GAGAATG-TGTTGATAGTGCCTAATCACAAAATGAATGGAGATCATTACTAGAATCCAAGTTTGT
324 GAGAATGCTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACGTTTGT
* * * * *
2442109 CTCATTTGAGACACGAACTTAGACTTGACAAAAAATGGTGGGAAAAATGCGTTTCTTGTGAAATG
389 CTCATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTGCGAAATG
2442174 AAAGCATCAATATGATGTATCCT
454 AAAGCATCAATATGATGTATCCT
* * * *
2442197 AAAGAGAAGACTATGTTTATGGTGCCTTATCCTGAAAAGAATGGTGATTAGTATGAGTATTCATG
1 AAAGAGAAGACAATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATG
* ** * * * *
2442262 TTTGCCTCGTTTAAGAGACAAACTTTGATTCTATCAAAAATGATAGAACGAAAAGTTTTTCTTGC
66 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGC
* **
2442327 AACATCAAAGCATCAATGTTGTGTATCCTAATGAAGGGAATGGGTTTTGGGTTTTGGCTTCACAA
131 GACATCAAAGCATCAATGTCATGTATCCTAATGAAGGGAAT--G---T--GTTTTGGCTTCACAA
* * *
2442392 TCTTGAAAAGAACTGAGACAGTTACAAGAATTGATGCTTGTCTTTTTTAAGGGATGAACTTTGAT
189 TCTTGAAAAGAACTGAGACAGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGAT
*
2442457 TTAAAAGAAAATAAGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCATCAATATCATTTATCCT
254 TTAAAGGAAAAT-AGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCATCAATATCATTTATCCT
* *
2442522 AATAAGGAGAATGC-GTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTTCTAGAATCCAC
318 AATGAGGAGAATGCTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAC
* * * * *
2442586 GTTTGTCTCATTTGAGGCACGGACTTAGACTTTA-AAAAATTTAGTGAGAAAAAAGCCTTACTTG
383 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAA-ATGGTGGGAAAAAAGCCTTTCTTG
* * * *
2442650 CAAAACGAAAGAATCAATACGATGTATCCT
447 CGAAATGAAAGCATCAATATGATGTATCCT
* *
2442680 AAAGAGAAAACAATGTTTATGTTGCCTAATCC-AGAAAAGAATAGGGG-TTAGTATGAGTATTCA
1 AAAGAGAAGACAATGTTTATGGTGCCTAATCCTA-AAAAGAAT-GGGGATTAGTATGAGTATTCA
* *
2442743 TGTTTGTCTTATTTAAGAGTCAAACTTTGATTCTACCAAAAACGGTGGAAGGAAAAGTTTTTCTT
64 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTT
** *
2442808 GCGATGTCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTATCTTTGG-TTCACAATCTT
129 GCGACATCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGT-TTTGGCTTCACAATCTT
* * *
2442872 GAAAAGAACTG-GACAGTTACGAGAATCAATGCTTATCTTATTTAAGGGATGAACTCTGATTTAA
193 GAAAAGAACTGAGACAGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAA
* * *
2442936 AGGAAAATAGGGCAAAGAAAAGATTCCCATGCAAAAGAAAATCATCAATATCATTTATCCTAGTG
258 AGGAAAATA-GGCAAAGAAAAGATTTCAATGCAAAAGAAAATCATCAATATCATTTATCCTAATG
* * * * * * * *
2443001 AGGGGAAT-ATGTTTGTAGTGCCTAATCACAAAATAAATAAAGATCATTGCGAGATTCC-CAGTT
322 AGGAGAATGCTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAC-GTT
* * * * * ** *
2443064 TGCCTTAATTGAGGCACGAACTTAGACTTTAGAAAAAATGGTGAGAAAAAAGTTTTTCTTGCAAA
386 TGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTGCGAA
* * *
2443129 ACGAAAGCATGAATATGATGTATCGT
451 ATGAAAGCATCAATATGATGTATCCT
* *
2443155 AATGAGAAGACAATGTTTATGGTGCCTAATCC-AGAAAAGAATGGGAATTAGTATGAGTATTCAT
1 AAAGAGAAGACAATGTTTATGGTGCCTAATCCTA-AAAAGAATGGGGATTAGTATGAGTATTCAT
* *
2443219 GTTTATCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGTTTTTCTTG
65 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTG
* * * * * * *
2443284 TGACCTCAAAGCATCAGTGTCATGCATCCTAATGGAGGGAATGTGTTTTAGCTT-ATAATCTTGA
130 CGACATCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCACAATCTTGA
* * * *
2443348 AAAGAACTGAGACAGTTACGAGAATCGATTG-TTGTCTTATTTAAGGTATGAACATCGTTTTAAA
195 AAAGAACTGAGACAGTTACGAGAATCGA-TGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAA
* *
2443412 GGAAAATAGGCAAAGAAAAGATTCCAATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAG
259 GGAAAATAGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAG
** * * ** *
2443477 GAG-ATTATGTTTATAGTGCTTAATCACAAAATGAATGAAGATCATTGCTAGAATCCTTGATTGT
324 GAGAATGCTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACGTTTGT
* * * *
2443541 CTCATTTGAAGCACGTACTTAGACTTTACAAAAAATGATGGGAAAAAAGCCTTTCTTACGAAATG
389 CTCATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTGCGAAATG
2443606 AAAGCATCAATATGATGTATCCT
454 AAAGCATCAATATGATGTATCCT
* ** * * * * *
2443629 AAAGAGAGGATTATGTTTATGGTGCGTTATCCTCAAAAGAATGGGGGTTAGTATGAGTATCCATG
1 AAAGAGAAGACAATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATG
* * *
2443694 TTTGTTTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAGAAAAAGTTTTT-TTGG
66 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTT-G
* * * *
2443758 TGACATCAAAGCATCAACGTCATGTCTCCTAATGAAGGGAATGTGTTTTGGCTTCACAATCTTAA
130 CGACATCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCACAATCTTGA
* * * * * * **
2443823 AAAGAACTGAGACAATTACAAGAGTCAATGCTTGTCTTTTTTAAGGGATGAACATCAATTTAAAG
195 AAAGAACTGAGACAGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAG
*
2443888 GAAAATAGGGCAAAGAAAAGATTTCTATGCAAAA-AAAATCATCAATATCATTTATCCTAATGAG
260 GAAAATA-GGCAAAGAAAAGATTTCAATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAG
* * *
2443952 GAGAATGC-GCTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAAAATCCACGTTTGT
324 GAGAATGCTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACGTTTGT
* * * * * *
2444016 CTCATTTAAGGCACGCACCTAGACTTTA-AAAAATTTAGTGGGAAAAAAGCCTTTCTTGTGAAAT
389 CTCATTTGAGGCACGAACTTAGACTTTACAAAAA-ATGGTGGGAAAAAAGCCTTTCTTGCGAAAT
* *
2444080 GAAAGCATCAATACGATCTATCCT
453 GAAAGCATCAATATGATGTATCCT
* * * * *
2444104 AAAGTGAAGACTATGTTTATGGTACCAAATTC-AGAAAAGAATGGGGATTAGTATGAGTATTCAT
1 AAAGAGAAGACAATGTTTATGGTGCCTAATCCTA-AAAAGAATGGGGATTAGTATGAGTATTCAT
* * *
2444168 GTTTGTCTTATTTAAGACACAAATTTTGATTCTATCAAAAACGGTGGAAAGAAAAGTTTTTCTTG
65 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTG
* * * ** * *
2444233 CGACACCAAAGAATTAAT-TCCATGTATCCTAATGAAGGGAATGTGTTTTGG-TTCTGATTCTTC
130 CGACATCAAAGCATCAATGT-CATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCACAATCTTG
* ** * * *
2444296 TAAAGAA-TGGAGATTGTTACCAGAAAT-GATGCTTGTCATCTTTAAGGGATGAACTTTGATTTA
194 AAAAGAACT-GAGACAGTTACGAG-AATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTA
* * *
2444359 AAGGAAAATAGGGCAAAGAAATGATTTCCATGCAAAAGAAAATCATCAGTATCATTTATCCTAAT
257 AAGGAAAATA-GGCAAAGAAAAGATTTCAATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
*
2444424 GAGGAGAATG-TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTT
321 GAGGAGAATGCTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACGTT
* * * *
2444488 TGTCTCAATTGAGGCACGAACTTAGACTTTATAAAAAATGGTGGGAAAAAAGCCTTTTTTGCAAA
386 TGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTGCGAA
*
2444553 ACGAAAGCATCAAT-TGATGTATCCT
451 ATGAAAGCATCAATATGATGTATCCT
* *
2444578 AATGAGAAGACAATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATG
1 AAAGAGAAGACAATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATG
* * * *
2444643 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGATAGAAGGAAAAATTTTTCTTGC
66 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGC
* *
2444708 GACATCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATAG-GTTTTGGCTTCATAATCCTGA
131 GACATCAAAGCATCAATGTCATGTATCCTAATGAAGGGAAT-GTGTTTTGGCTTCACAATCTTGA
* * * * * *
2444772 AAAGAACAGAGACAGTTACGAGAATCGATTCTTGTCTTATTTAAGGTATGAACATCGTTTTAAAG
195 AAAGAACTGAGACAGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAG
* * *
2444837 GAAAATAGGCAAAGAAAAGATTCCAATGCAAAAGAAATTCATCAATATCATTTCTCCTAATGAGG
260 GAAAATAGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGG
* * *
2444902 AGAATGC-GATTATAGTGCCTAGTCACAAAATGAATAAAGATCATTACTAGAATCCACGTTTGTC
325 AGAATGCTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACGTTTGTC
* * * **
2444966 TCATTTGAGGCACGAACCTAGACTTTA-AAAAATTTGGTGAGAAAAAAAACTTTCTTGCGAAATG
390 TCATTTGAGGCACGAACTTAGACTTTACAAAAA-ATGGTGGGAAAAAAGCCTTTCTTGCGAAATG
*
2445030 AAAGCATTAATATGATGTATCCT
454 AAAGCATCAATATGATGTATCCT
* * *
2445053 AATGAGAAGACAATGTTTATGGTGCCTAATCC-AGAAAAGAATGGGGATTAGTACGAGTATTCTT
1 AAAGAGAAGACAATGTTTATGGTGCCTAATCCTA-AAAAGAATGGGGATTAGTATGAGTATTCAT
* *
2445117 GATTGTCTTATTTAAGAGAGAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTG
65 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTG
* * *
2445182 TGACATCAAAGCATCAATGTCATGTATCCTGATGAAGGGAATGTGTTTTGGCTTCATAATCTTGA
130 CGACATCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCACAATCTTGA
* * * * * * * * *
2445247 AAAGTGA-TGAGTCAATTATGAGAATTGATTCTTGTCTTATTTAAGGAATGAACATTGTTTTAAA
195 AAAG-AACTGAGACAGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAA
* * * * *
2445311 GGAAAATAGGCAAAGAAAAAATTCCAATGCAAAAGAAAATCATTAATATTATTTATCCTAAAGAG
259 GGAAAATAGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAG
* * * *
2445376 AAGAATGC-GTTTATAATGCCTAATCACAAAATGAATAAATATCATTACTAGAATCCACGTTTGT
324 GAGAATGCTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACGTTTGT
* * * *
2445440 GTCATTTGAGGCAC-AAATCCAGACTTTA-AAAAATTTGGTGGGAAAAAAGCCTTTCTTGCGAAA
389 CTCATTTGAGGCACGAACT-TAGACTTTACAAAAA-ATGGTGGGAAAAAAGCCTTTCTTGCGAAA
** *
2445503 TGAAAGCATCAATACCATATATCCT
452 TGAAAGCATCAATATGATGTATCCT
*
2445528 AATGAGAAGACAATGTTTATGGTGCCTAATCC-AGAAAAGAATGGGGATTAGTATGAGTATTCAT
1 AAAGAGAAGACAATGTTTATGGTGCCTAATCCTA-AAAAGAATGGGGATTAGTATGAGTATTCAT
* * ** * *
2445592 GTTTGTCTTATTTAAGAGACAAACTTTAATTCTATCATAAATAGTGGAAGGAAAAATGTTTCTTG
65 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTG
* * *
2445657 TGACGTCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATAG-GTTTTGGCTTCATAATCTTG
130 CGACATCAAAGCATCAATGTCATGTATCCTAATGAAGGGAAT-GTGTTTTGGCTTCACAATCTTG
* * * * * *
2445721 AAAAGAACAGAGACAGTTACGAGAATCGATTCTTGTCTTATTTAAGGTATGAACATCGTTTTAAA
194 AAAAGAACTGAGACAGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAA
* * * * *
2445786 GGAAAATAGGCAAAGAAAAGATTCCAATTCAAAAGAAATTCATCAATATCATTTCTCCTATTGAG
259 GGAAAATAGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAG
*
2445851 GAGAATGC-GTTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCACGTTTGT
324 GAGAATGCTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACGTTTGT
* * * ** *
2445915 GTTATTTGAGGCACAAACCCAGACTTTA-AAAAATTTGGTGGGAAAAAAGCCTTTCTTGCGAAAT
389 CTCATTTGAGGCACGAACTTAGACTTTACAAAAA-ATGGTGGGAAAAAAGCCTTTCTTGCGAAAT
** *
2445979 GAAAGCATCAATACCATATATCCT
453 GAAAGCATCAATATGATGTATCCT
* *
2446003 AATGAGAAGACAATGTTTATGGTGCCTAATCC-AGAAAAGAATGGGGATTAGTATGGGTATTCAT
1 AAAGAGAAGACAATGTTTATGGTGCCTAATCCTA-AAAAGAATGGGGATTAGTATGAGTATTCAT
* * ** * *
2446067 GTTTGTCTTATTTAAGAGACAAACTTTAATTCTATCATAAATAGTGGAAGGAAAAATGTTTCTTG
65 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTG
* * * *
2446132 TGACGTCAAAGCATCAATGTCATGCATCCTAATGGAGGGAATGTGTTTTGGCTTCACAATCTTGA
130 CGACATCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCACAATCTTGA
* * * * * * * *
2446197 AAGGAACTAAGACAGTTACGAGAAGCAATTCTTGTCTTATTTAAGGTATGAAC-ATCATTTTAAA
195 AAAGAACTGAGACAGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGA-TTTAAA
* *
2446261 GGAAAATAGGCAAAGAAAAGATTTAAATGCAAAAGAAAATCATCAATATTATTTATCCTAATGAG
259 GGAAAATAGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAG
* * * * * * *
2446326 GTGAAT-ATGTTTATAGTGGCTAATCACAAAATAAATGAAGATCATTATTA-AATCTATGTTTGT
324 GAGAATGCTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACGTTTGT
* * * * *
2446389 CTCATTTGAGGCGCGAACTTAGACTTTATAAGAATTGGTAGGAAAAAAGCCTTTCTT-CTGAAAT
389 CTCATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTGC-GAAAT
2446453 GAA
453 GAA
2446456 GAGAAGACTA
Statistics
Matches: 5783, Mismatches: 722, Indels: 222
0.86 0.11 0.03
Matches are distributed among these distances:
461 116 0.02
462 294 0.05
463 1 0.00
467 1 0.00
468 1 0.00
471 2 0.00
472 497 0.09
473 281 0.05
474 1265 0.22
475 2698 0.47
476 207 0.04
477 8 0.00
478 1 0.00
479 1 0.00
481 2 0.00
482 13 0.00
483 389 0.07
484 6 0.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (476 bp):
AAAGAGAAGACAATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATG
TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGC
GACATCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCACAATCTTGAA
AAGAACTGAGACAGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGG
AAAATAGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGA
GAATGCTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACGTTTGTCT
CATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTGCGAAATGAA
AGCATCAATATGATGTATCCT
Found at i:2443792 original size:949 final size:948
Alignment explanation
Indices: 2439366--2446445 Score: 8686
Period size: 949 Copynumber: 7.5 Consensus size: 948
2439356 TAGACCTTAC
* ** * *
2439366 AAAGAGAAGGCTATGTTTATATTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATG
1 AAAGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATGGGGATTAGTATGAGTATTCATG
* * * *
2439431 TTTGTCATATTAAAGAGACAAACTTTGACTCTATCAAAAACGGTGGAAGGAAATGTTTTTCTTGC
66 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGC
* * * * * *
2439496 AACAC-CAAAGAATCAATTTCATGTATCCTAAGGAAGGGAATGTGTTTTGGC-TC-TGATTCTCG
131 GAC-CTCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCAT-AATCTTG
* ** * * * * *
2439558 TAAAGAA-TGGAGATTGTTACGAGAAACGATGCTTGTCATCTTCAAGGGATGAACTTTGATTTT-
194 AAAAGAACT-GAGACAGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACATTG-TTTTA
* * *
2439621 AAGGAAAATAGGGCAAAGAAAATATTTCC-ATGCAAAAGAAAATCATCAATTTCTTTTATCCTAA
257 AAGGAAAATA-GGCAAAGAAAAGA-TTCCAATGCAAAAGAAAATCATCAATATCATTTATCCTAA
* * * * * *
2439685 TGAGGGGAATGTATTTATAATGCCTAATCACAAAATGAAAGAAGATCATTACTAGAATCCAAGTT
320 TAAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTT
* * *
2439750 TATCTCATTTGAGGCACGAACTTAAACTTTATAAAAAATGGTGGGAAAAAAGCCTGTT-TTGCAA
385 TGTCTCATTTGAGGCACGAACTTAGACTTTA-AAAAAATGGTGGGAAAAAAGCCT-TTCTTGCGA
* * *
2439814 AACGAAAGCATCAAT-TGATGTATCCTAATGAGAAGACAATATTTATGGTGCCTAATCCGGAAAA
448 AACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTAATCCTGAAAA
* *
2439878 GAATAGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGTCAAACTTTGATTCTATCAAA
513 GAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAA
** * * *
2439943 AATGGTGGAAGGAAAAGTTATTCTTGCGACATCAAAGCATCAATGTCATGCATCCTAATGAA-GG
578 AACAGTGGAAGAAAAAGTT-TTTTTGCGACATCAAAGCATCAATGTCATGTATCCTAATGAAGGG
* * *
2440007 AAT-TGTGTTTGGCTTCA-AATCTTGAAAAGAA-TAGAGGCAGTTATGAGAATCGATTCTTGTCT
642 AATGTGT-TTTGGCTTCACAATCTTGAAAAGAACT-GAGACAGTTACGAGAATCGATGCTTGTCT
* *
2440069 TGTTTAAGGTATGAACATC-ATTTTAAAGGAAAATA-GGCAAAGAAAAGATTCCAATGCAAAAGA
705 TATTTAAGGGATGAACATCGA-TTTAAAGGAAAATAGGGCAAAGAAAAGATTCCAATGCAAAAGA
* * * *
2440132 AAATCATTAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTATTCATAAAATGAAT
769 AAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
* * * * * * * * *
2440197 GAAGATCTTTGCTAGAGTCCAAGTTTGTCTCTTTTGAAGCGCAAACTTAGACTTTATAAAAAATG
834 AAAGATCATTACTAGAATCCCAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTA-AAAAAATG
* *
2440262 GTGGGAAAAAAGCCTTTCTTGCGAAAGGAAAGCATTAATATGATGTATCCT
898 GTGGGAAAAAAGCCTTTCTTGCGAAATGAAAGCATCAATATGATGTATCCT
* ** * * *
2440313 AAAGAGAAGATTATGTTTA-GGTGTGTTATCCTA-AAAAGAATGGGGGTTAGTATGAGTATCCAT
1 AAAGAGAAGACTATGTTTATGGTGCCTAATCC-AGAAAAGAATGGGGATTAGTATGAGTATTCAT
* * * * * * *
2440376 ATATGTCTTGTTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAATGAAAGGTATTTCTTA
65 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTG
* * * * * * * * *
2440441 CGGCATCAAAGCATCAATTTCATGTCTCCTAATGAAGAGAATGTATTTTGGCTTCACAATTTTCA
130 CGACCTCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCATAATCTTGA
* * *
2440506 AAAGAACTGAGACAGTTACGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTAAAG
195 AAAGAACTGAGACAGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACATTGTTTTAAAG
* *
2440571 GAAAATAGAGCAAAGAAAAGATTTCAATCCAAAAGAAAATCATCAATATCATTTATCCTAATAAG
260 GAAAATAG-GCAAAGAAAAGATTCCAATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAG
* * * * *
2440636 GAGAATGCT-TTTATAGTACCAAATCACAAAATGAATGAAGATCATTTCTAGAATCCACGTTTGT
324 GAGAAT-ATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGT
* * ** ** *
2440700 TTCATTTGAGGCACGAACCTAGACTTTGAAAAATTTGGTGGGAAAAAAGCCTTTCTTTTGAAATG
388 CTCATTTGAGGCACGAACTTAGACTTT-AAAAAAATGGTGGGAAAAAAGCCTTTCTTGCGAAACG
* * * * *
2440765 AAAGCATCAATACGATGTATCCTAAAGAGAAGACTATGATTATGTTGCCTTATCCTGAAAAGAAT
452 AAAGCATCAATATGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTAATCCTGAAAAGAAT
* * * * * *
2440830 GTGGATTAGTATGAGTATTCATGTTTGTCATATTAAAGAGAGAAACTTTGATTCTATAAAAAACG
517 GGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACA
* * * * * *
2440895 GTGGAAGGAAAAGTATTTTTTACGACAACAAAGAATCAATTTCATGTATCCTAAGGAAGGGAATG
582 GTGGAAGAAAAAGT-TTTTTTGCGACATCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATG
* * ** * * *
2440960 TGTTTTGGC-TC-CGAT-TCTCATAAAGAA-TAGAGATTGTTATGAGAAAT-GATGCTTGTCATC
646 TGTTTTGGCTTCACAATCT-TGA-AAAGAACT-GAGACAGTTACGAG-AATCGATGCTTGTCTTA
* * *
2441020 TTTAAGGGATGAGCTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCC-ATGCAAAAGAAA
707 TTTAAGGGATGAACATCGATTTAAAGGAAAATAGGGCAAAGAAAAGA-TTCCAATGCAAAAGAAA
* * * * *
2441084 AACATTAATATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTACC-ATATCACAAAATGAATG
771 ATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA-ATCACAAAATGAATA
* * *
2441148 AAGATCATTACTAGAATCCAAGTTTGTCTCATTTGGGGCACGAACTTAGACTATACAAAAAATGG
835 AAGATCATTACTAGAATCCCAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTA-AAAAAATGG
* * *
2441213 TAGGAAAAAAGCCTTTTTTGCGAAATGAAAGCATCAATATTATGTATCCT
899 TGGGAAAAAAGCCTTTCTTGCGAAATGAAAGCATCAATATGATGTATCCT
*** *
2441263 AAAGAGAAGACTAT-TTTATGGTGCCTAATTTGGAAAAGAATGGGGATTAGTATGAGTATTAATG
1 AAAGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATGGGGATTAGTATGAGTATTCATG
* * * *
2441327 TTTATCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAGGAAAAGTGTTTCTTGT
66 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGC
* * * * * *
2441392 GACCCCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGTG-TTTGTCTCCCT-ATC-TCAT
131 GACCTCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCATAATCTTGA-
** * ** * * * * * * *
2441454 AAAGAAAGGATATTGGTACGAGGATTGATGCTTGTCTTATTCAAGGTATGATCATCGTTTTAAAG
195 AAAGAACTGAGACAGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACATTGTTTTAAAG
* *
2441519 GAAAATAGGCAAAGAAAAGATTCCAATGCAAATGAAAATCATCAATATCATTTATCCTAATGAGG
260 GAAAATAGGCAAAGAAAAGATTCCAATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGG
* * * *
2441584 AGAATATGTTTATATTGCCTATTCACAAAATGAATGAAGGTCATTACTAGAATCCAAGTTTCTCT
325 AGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCT
* * * *
2441649 CATTTGAAGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCTTTTCCTGTGAAACGAA
390 CATTTGAGGCACGAACTTAGACTTTA-AAAAAATGGTGGGAAAAAAGCCTTTCTTGCGAAACGAA
* ** * *
2441714 AGCATCAATATGATGTATCCTAAAGAGAGGATTATGTTTATGGTGCATTATCCTGAAAAGAATGG
454 AGCATCAATATGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTAATCCTGAAAAGAATGG
* *
2441779 GGATTAGTATGAGTATCCATGTTTGTCTTGTTTAAGAGACAAACTTTGATTCTATCAAAAACAGT
519 GGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGT
* ** * *
2441844 GGAAG-----G------TGTGACCCCAAAGCATCAATTTCATGTATCCTAATGAGGGGAATGTG-
584 GGAAGAAAAAGTTTTTTTGCGACATCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGT
* * * ** *** * * *
2441897 TTTGTCTCCA-AATC-TCATAAAGAAAGGAGATTTTTACGAGAATTGATGCTTATCTTATTTGAG
649 TTTGGCTTCACAATCTTGA-AAAGAACTGAGACAGTTACGAGAATCGATGCTTGTCTTATTTAAG
* ** * * * * *
2441960 GGATAAATTTTGATTTTAAGGAAAATAGGGAAAAGAAAAGATTTCAATGCATAAGAAAATCATCA
713 GGATGAACATCGATTTAAAGGAAAATAGGGCAAAGAAAAGATTCCAATGCAAAAGAAAATCATCA
* **
2442025 ATATCATTTATCCTAATGAGGAGAATGTGTTGATAGTGCCTAATCACAAAATGAATGGAGATCAT
778 ATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCAT
* * *
2442090 TACTAGAATCCAAGTTTGTCTCATTTGAGACACGAACTTAGACTTGACAAAAAATGGTGGGAAAA
843 TACTAGAATCCCAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTA-AAAAAATGGTGGGAAAA
* * *
2442155 ATGCGTTTCTTGTGAAATGAAAGCATCAATATGATGTATCCT
907 AAGCCTTTCTTGCGAAATGAAAGCATCAATATGATGTATCCT
* * *
2442197 AAAGAGAAGACTATGTTTATGGTGCCTTATCCTGAAAAGAATGGTGATTAGTATGAGTATTCATG
1 AAAGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATGGGGATTAGTATGAGTATTCATG
* ** * * * *
2442262 TTTGCCTCGTTTAAGAGACAAACTTTGATTCTATCAAAAATGATAGAACGAAAAGTTTTTCTTGC
66 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGC
* * ** *
2442327 AACATCAAAGCATCAATGTTGTGTATCCTAATGAAGGGAATGGGTTTTGGGTTTTGGCTTCACAA
131 GACCTCAAAGCATCAATGTCATGTATCCTAATGAAGGGAAT--G---T--GTTTTGGCTTCATAA
* * * * *
2442392 TCTTGAAAAGAACTGAGACAGTTACAAGAATTGATGCTTGTCTTTTTTAAGGGATGAACTTTGAT
189 TCTTGAAAAGAACTGAGACAGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACATTGTT
* *
2442457 TTAAAAGAAAATAAGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCATCAATATCATTTATCCT
254 TTAAAGGAAAAT-AGGCAAAGAAAAGATTCCAATGCAAAAGAAAATCATCAATATCATTTATCCT
** * *
2442522 AATAAGGAGAATGCGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTTCTAGAATCCACG
318 AATAAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAG
* * * * * *
2442587 TTTGTCTCATTTGAGGCACGGACTTAGACTTTAAAAAATTTAGTGAGAAAAAAGCCTTACTTGCA
383 TTTGTCTCATTTGAGGCACGAACTTAGACTTTAAAAAA-ATGGTGGGAAAAAAGCCTTTCTTGCG
* * * * *
2442652 AAACGAAAGAATCAATACGATGTATCCTAAAGAGAAAACAATGTTTATGTTGCCTAATCCAGAAA
447 AAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTAATCCTGAAA
* *
2442717 AGAATAGGGG-TTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGTCAAACTTTGATTCTACCA
512 AGAAT-GGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
* * **
2442781 AAAACGGTGGAAGGAAAAGTTTTTCTTGCGATGTCAAAGCATCAATGTCATGTATCCTAATGAAG
576 AAAACAGTGGAAGAAAAAGTTTTT-TTGCGACATCAAAGCATCAATGTCATGTATCCTAATGAAG
* * *
2442846 GGAATGTATCTTTGG-TTCACAATCTTGAAAAGAACTG-GACAGTTACGAGAATCAATGCTTATC
640 GGAATGTGT-TTTGGCTTCACAATCTTGAAAAGAACTGAGACAGTTACGAGAATCGATGCTTGTC
*
2442909 TTATTTAAGGGATGAAC-TCTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTCCCATGCAAAAG
704 TTATTTAAGGGATGAACATC-GATTTAAAGGAAAATAGGGCAAAGAAAAGATTCCAATGCAAAAG
* * * * *
2442973 AAAATCATCAATATCATTTATCCTAGTGAGGGGAATATGTTTGTAGTGCCTAATCACAAAATAAA
768 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * * * * *
2443038 TAAAGATCATTGCGAGATTCCCAGTTTGCCTTAATTGAGGCACGAACTTAGACTTTAGAAAAAAT
833 TAAAGATCATTACTAGAATCCCAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTA-AAAAAAT
* ** * * * *
2443103 GGTGAGAAAAAAGTTTTTCTTGCAAAACGAAAGCATGAATATGATGTATCGT
897 GGTGGGAAAAAAGCCTTTCTTGCGAAATGAAAGCATCAATATGATGTATCCT
* * *
2443155 AATGAGAAGACAATGTTTATGGTGCCTAATCCAGAAAAGAATGGGAATTAGTATGAGTATTCATG
1 AAAGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATGGGGATTAGTATGAGTATTCATG
* * *
2443220 TTTATCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGTTTTTCTTGT
66 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGC
* * * *
2443285 GACCTCAAAGCATCAGTGTCATGCATCCTAATGGAGGGAATGTGTTTTAGCTT-ATAATCTTGAA
131 GACCTCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCATAATCTTGAA
* *
2443349 AAGAACTGAGACAGTTACGAGAATCGATTG-TTGTCTTATTTAAGGTATGAACATCGTTTTAAAG
196 AAGAACTGAGACAGTTACGAGAATCGA-TGCTTGTCTTATTTAAGGGATGAACATTGTTTTAAAG
2443413 GAAAATAGGCAAAGAAAAGATTCCAATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGG
260 GAAAATAGGCAAAGAAAAGATTCCAATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGG
* * * ** *
2443478 AGATTATGTTTATAGTGCTTAATCACAAAATGAATGAAGATCATTGCTAGAATCCTTGATTGTCT
325 AGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCT
* * * * *
2443543 CATTTGAAGCACGTACTTAGACTTTACAAAAAATGATGGGAAAAAAGCCTTTCTTACGAAATGAA
390 CATTTGAGGCACGAACTTAGACTTTA-AAAAAATGGTGGGAAAAAAGCCTTTCTTGCGAAACGAA
* ** * * *
2443608 AGCATCAATATGATGTATCCTAAAGAGAGGATTATGTTTATGGTGCGTTATCCTCAAAAGAATGG
454 AGCATCAATATGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTAATCCTGAAAAGAATGG
* * *
2443673 GGGTTAGTATGAGTATCCATGTTTGTTTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGT
519 GGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGT
* * *
2443738 GGAAGAAAAAGTTTTTTTGGTGACATCAAAGCATCAACGTCATGTCTCCTAATGAAGGGAATGTG
584 GGAAGAAAAAGTTTTTTT-GCGACATCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG
* * * * * *
2443803 TTTTGGCTTCACAATCTTAAAAAGAACTGAGACAATTACAAGAGTCAATGCTTGTCTTTTTTAAG
648 TTTTGGCTTCACAATCTTGAAAAGAACTGAGACAGTTACGAGAATCGATGCTTGTCTTATTTAAG
* * *
2443868 GGATGAACATCAATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCTATGCAAAA-AAAATCATCA
713 GGATGAACATCGATTTAAAGGAAAATAGGGCAAAGAAAAGATTCCAATGCAAAAGAAAATCATCA
* *
2443932 ATATCATTTATCCTAATGAGGAGAATGCGCTTATAGTGCCTAATCACAAAATGAATAAAGATCAT
778 ATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCAT
* * * * * *
2443997 TACTAAAAT-CCACGTTTGTCTCATTTAAGGCACGCACCTAGACTTTAAAAAATTTAGTGGGAAA
843 TACTAGAATCCCA-GTTTGTCTCATTTGAGGCACGAACTTAGACTTTAAAAAA-ATGGTGGGAAA
* * *
2444061 AAAGCCTTTCTTGTGAAATGAAAGCATCAATACGATCTATCCT
906 AAAGCCTTTCTTGCGAAATGAAAGCATCAATATGATGTATCCT
* * * *
2444104 AAAGTGAAGACTATGTTTATGGTACCAAATTCAGAAAAGAATGGGGATTAGTATGAGTATTCATG
1 AAAGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATGGGGATTAGTATGAGTATTCATG
* * *
2444169 TTTGTCTTATTTAAGACACAAATTTTGATTCTATCAAAAACGGTGGAAAGAAAAGTTTTTCTTGC
66 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGC
* * *
2444234 GACAC-CAAAGAATTAAT-TCCATGTATCCTAATGAAGGGAATGTGTTTTGG-TTC-TGATTCTT
131 GAC-CTCAAAGCATCAATGT-CATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCAT-AATCTT
** ** * * * * *
2444295 CTAAAGAA-TGGAGATTGTTACCAGAAAT-GATGCTTGTCATCTTTAAGGGATGAACTTTGATTT
193 GAAAAGAACT-GAGACAGTTACGAG-AATCGATGCTTGTCTTATTTAAGGGATGAACATTGTTTT
* *
2444358 AAAGGAAAATAGGGCAAAGAAATGATTTCC-ATGCAAAAGAAAATCATCAGTATCATTTATCCTA
256 AAAGGAAAATA-GGCAAAGAAAAGA-TTCCAATGCAAAAGAAAATCATCAATATCATTTATCCTA
* *
2444422 ATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGT
319 ATAAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGT
* * *
2444487 TTGTCTCAATTGAGGCACGAACTTAGACTTTATAAAAAATGGTGGGAAAAAAGCCTTTTTTGCAA
384 TTGTCTCATTTGAGGCACGAACTTAGACTTTA-AAAAAATGGTGGGAAAAAAGCCTTTCTTGCGA
*
2444552 AACGAAAGCATCAAT-TGATGTATCCTAATGAGAAGACAATGTTTATGGTGCCTAATCCTGAAAA
448 AACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTAATCCTGAAAA
2444616 GAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAA
513 GAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAA
* *
2444681 AA-TGATAGAAGGAAAAA-TTTTTCTTGCGACATCAAAGCATCAATGTCATGTATCCTAATGAAG
578 AACAG-TGGAA-GAAAAAGTTTTT-TTGCGACATCAAAGCATCAATGTCATGTATCCTAATGAAG
* * * *
2444744 GGAATAG-GTTTTGGCTTCATAATCCTGAAAAGAACAGAGACAGTTACGAGAATCGATTCTTGTC
640 GGAAT-GTGTTTTGGCTTCACAATCTTGAAAAGAACTGAGACAGTTACGAGAATCGATGCTTGTC
* *
2444808 TTATTTAAGGTATGAACATCGTTTTAAAGGAAAATA-GGCAAAGAAAAGATTCCAATGCAAAAGA
704 TTATTTAAGGGATGAACATCGATTTAAAGGAAAATAGGGCAAAGAAAAGATTCCAATGCAAAAGA
* * * * *
2444872 AATTCATCAATATCATTTCTCCTAATGAGGAGAATGCGATTATAGTGCCTAGTCACAAAATGAAT
769 AAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
* *
2444937 AAAGATCATTACTAGAAT-CCACGTTTGTCTCATTTGAGGCACGAACCTAGACTTTAAAAAATTT
834 AAAGATCATTACTAGAATCCCA-GTTTGTCTCATTTGAGGCACGAACTTAGACTTTAAAAAA-AT
* ** *
2445001 GGTGAGAAAAAAAACTTTCTTGCGAAATGAAAGCATTAATATGATGTATCCT
897 GGTGGGAAAAAAGCCTTTCTTGCGAAATGAAAGCATCAATATGATGTATCCT
* * * *
2445053 AATGAGAAGACAATGTTTATGGTGCCTAATCCAGAAAAGAATGGGGATTAGTACGAGTATTCTTG
1 AAAGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATGGGGATTAGTATGAGTATTCATG
* * *
2445118 ATTGTCTTATTTAAGAGAGAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGT
66 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGC
* *
2445183 GACATCAAAGCATCAATGTCATGTATCCTGATGAAGGGAATGTGTTTTGGCTTCATAATCTTGAA
131 GACCTCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCATAATCTTGAA
* * * * * * *
2445248 AAGTGA-TGAGTCAATTATGAGAATTGATTCTTGTCTTATTTAAGGAATGAACATTGTTTTAAAG
196 AAG-AACTGAGACAGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACATTGTTTTAAAG
* * *
2445312 GAAAATAGGCAAAGAAAAAATTCCAATGCAAAAGAAAATCATTAATATTATTTATCCTAA-AGAG
260 GAAAATAGGCAAAGAAAAGATTCCAATGCAAAAGAAAATCATCAATATCATTTATCCTAATA-AG
* ** * * * * *
2445376 AAGAATGCGTTTATAATGCCTAATCACAAAATGAATAAATATCATTACTAGAATCCACGTTTGTG
324 GAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTC
* * * *
2445441 TCATTTGAGGCAC-AAATCCAGACTTTAAAAAATTTGGTGGGAAAAAAGCCTTTCTTGCGAAATG
389 TCATTTGAGGCACGAACT-TAGACTTTAAAAAA-ATGGTGGGAAAAAAGCCTTTCTTGCGAAACG
** * * *
2445505 AAAGCATCAATACCATATATCCTAATGAGAAGACAATGTTTATGGTGCCTAATCCAGAAAAGAAT
452 AAAGCATCAATATGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTAATCCTGAAAAGAAT
* * *
2445570 GGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTAATTCTATCATAAATA
517 GGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACA
* * *
2445635 GTGGAAGGAAAAA-TGTTTCTTGTGACGTCAAAGCATCAATGTCATGTATCCTAATGAAGGGAAT
582 GTGGAA-GAAAAAGT-TTTTTTGCGACATCAAAGCATCAATGTCATGTATCCTAATGAAGGGAAT
* * *
2445699 AG-GTTTTGGCTTCATAATCTTGAAAAGAACAGAGACAGTTACGAGAATCGATTCTTGTCTTATT
645 -GTGTTTTGGCTTCACAATCTTGAAAAGAACTGAGACAGTTACGAGAATCGATGCTTGTCTTATT
* * * *
2445763 TAAGGTATGAACATCGTTTTAAAGGAAAATA-GGCAAAGAAAAGATTCCAATTCAAAAGAAATTC
709 TAAGGGATGAACATCGATTTAAAGGAAAATAGGGCAAAGAAAAGATTCCAATGCAAAAGAAAATC
* * *
2445827 ATCAATATCATTTCTCCTATTGAGGAGAATGCGTTTATAGTGCCTAATCACAAAATGAATAAAGA
774 ATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGA
* * * ** *
2445892 TCATTACTAGAAT-CCACGTTTGTGTTATTTGAGGCACAAACCCAGACTTTAAAAAATTTGGTGG
839 TCATTACTAGAATCCCA-GTTTGTCTCATTTGAGGCACGAACTTAGACTTTAAAAAA-ATGGTGG
** *
2445956 GAAAAAAGCCTTTCTTGCGAAATGAAAGCATCAATACCATATATCCT
902 GAAAAAAGCCTTTCTTGCGAAATGAAAGCATCAATATGATGTATCCT
* * *
2446003 AATGAGAAGACAATGTTTATGGTGCCTAATCCAGAAAAGAATGGGGATTAGTATGGGTATTCATG
1 AAAGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATGGGGATTAGTATGAGTATTCATG
* * ** * * *
2446068 TTTGTCTTATTTAAGAGACAAACTTTAATTCTATCATAAATAGTGGAAGGAAAAATGTTTCTTGT
66 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGC
* * * *
2446133 GACGTCAAAGCATCAATGTCATGCATCCTAATGGAGGGAATGTGTTTTGGCTTCACAATCTTGAA
131 GACCTCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCATAATCTTGAA
* * * * * * **
2446198 AGGAACTAAGACAGTTACGAGAAGCAATTCTTGTCTTATTTAAGGTATGAACATCATTTTAAAGG
196 AAGAACTGAGACAGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACATTGTTTTAAAGG
** * * *
2446263 AAAATAGGCAAAGAAAAGATTTAAATGCAAAAGAAAATCATCAATATTATTTATCCTAATGAGGT
261 AAAATAGGCAAAGAAAAGATTCCAATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGA
* * * * *
2446328 GAATATGTTTATAGTGGCTAATCACAAAATAAATGAAGATCATTATTA-AATCTATGTTTGTCTC
326 GAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTC
* * * *
2446392 ATTTGAGGCGCGAACTTAGACTTTATAAGAATTGGTAGGAAAAAAGCCTTTCTT
391 ATTTGAGGCACGAACTTAGACTTTA-AAAAAATGGTGGGAAAAAAGCCTTTCTT
2446446 CTGAAATGAA
Statistics
Matches: 5317, Mismatches: 710, Indels: 210
0.85 0.11 0.03
Matches are distributed among these distances:
933 6 0.00
934 264 0.05
935 179 0.03
937 1 0.00
940 1 0.00
942 2 0.00
943 7 0.00
944 63 0.01
945 279 0.05
946 149 0.03
947 528 0.10
948 283 0.05
949 1570 0.30
950 1516 0.29
951 28 0.01
953 1 0.00
956 1 0.00
957 41 0.01
958 381 0.07
959 15 0.00
960 2 0.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (948 bp):
AAAGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATGGGGATTAGTATGAGTATTCATG
TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGC
GACCTCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCATAATCTTGAA
AAGAACTGAGACAGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACATTGTTTTAAAGG
AAAATAGGCAAAGAAAAGATTCCAATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGA
GAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTC
ATTTGAGGCACGAACTTAGACTTTAAAAAAATGGTGGGAAAAAAGCCTTTCTTGCGAAACGAAAG
CATCAATATGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTAATCCTGAAAAGAATGGGG
ATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGG
AAGAAAAAGTTTTTTTGCGACATCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTT
TGGCTTCACAATCTTGAAAAGAACTGAGACAGTTACGAGAATCGATGCTTGTCTTATTTAAGGGA
TGAACATCGATTTAAAGGAAAATAGGGCAAAGAAAAGATTCCAATGCAAAAGAAAATCATCAATA
TCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCATTAC
TAGAATCCCAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAAAAAAATGGTGGGAAAAAAGC
CTTTCTTGCGAAATGAAAGCATCAATATGATGTATCCT
Found at i:2447551 original size:476 final size:475
Alignment explanation
Indices: 2446515--2448171 Score: 2120
Period size: 476 Copynumber: 3.5 Consensus size: 475
2446505 ATGAGAATTG
2446515 CAAAATGAATGAAGATCATTACTAGAATCC-TAGTTTGTCTCATTTGAAGCACGAACTTAGACTT
1 CAAAATGAATGAAGATCATTACTAGAATCCAT-GTTTGTCTCATTTGAAGCACGAACTTAGACTT
* * *
2446579 TACAAAAAAT-AGTGAGAAAAAAGCCTTTCTTGTGAAACCAAAGCATCAATACGATGTATCCTAA
65 TACAAAAAATGA-TGAGAAAAAAGCCTTTCTTGCGAAACTAAAGCATCAATACGATGTATCATAA
* * *
2446643 TGAGAAGACAATGTTTAGGGTGCCTAATCCGGAAAAGAATGGGGATTAGTATTAGTATTCTTGTT
129 TGAGAAGACAATGTTTATGGTGCCTAATCCGGAAAAGAATGGGGATTAGTATGAGTATTCATGTT
* * * *
2446708 TGTCTTATTTGAGAGATAAACTTTGATTCTATCAAAAATGGTGGAAGGAAAAGTTTTTCTTGTGA
194 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGA
* * * *
2446773 CATCAAAGCGTCAATGTCATGTATCTTAATGAAGGGAATGTGTTTTGGCTTCACAATATTGAAAA
259 CATCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTTTTTTGGCTTCACAATCTTGAAAA
*
2446838 GAACTGAGACAGTTACGAGAATGGATTCTTGTCTTATTTAAGGTATGAACATTTATTTAAAGGAA
324 GAACTGAGACAGTTACGAGAATCGATTCTTGTCTTATTTAAGGTATGAAC-TTTATTTAAAGGAA
* * * *
2446903 AATAGGGCAAACAAAAGATTCCCATGCAAAAAAAAAATCATCAATATCATTTATCCTAATGAGGT
388 AATAGGGCAAAGAAAAGATTTCCATGC-AAAAGAAAATCATCAATATCATTTATCCTAATGAGGA
* *
2446968 GAATGTGTTTATAGTGCCTAATTA
452 GAATATGTTTATAGTGCCTAATCA
* * * * * * * * * * * *
2446992 CAAAATAAATGAATATCATTACTAAAATCCATGCTCGTCTTACTTGAGGCGCGGATTTAGAGTTT
1 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAAGCACGAACTTAGACTTT
* * * * *
2447057 ACAAAAACTGGT-AGAAAAAAAGCCTTTCTTGCGAAA-TAAGGCATCAATATGATGTATCATGGA
66 ACAAAAAATGATGAG-AAAAAAGCCTTTCTTGCGAAACTAAAGCATCAATACGATGTATCAT-AA
* * * *
2447120 -GAGAAGACTATGTTTATGGTGCGTAATCTGGAAAAGAATGGGGAATAGTATGAGTATTCATGTT
129 TGAGAAGACAATGTTTATGGTGCCTAATCCGGAAAAGAATGGGGATTAGTATGAGTATTCATGTT
** * * * * * *
2447184 TACCTTATTTAAGTGATAAACTTTGATTCTATCAGAAGCGATGGAAGGAAAAGTTTTTCTTGGGA
194 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGA
* * * * ** * ** *
2447249 CACCAAAGCATCAATTTCATGTATCCTGAGGAAGGGAATGTTTTTTGGC-TCTGATTCCCGTAAA
259 CATCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTTTTTTGGCTTCACAATCTTGAAAA
* ** * * *
2447313 GGA-TGGAGATTGTTACGAGAATCAATTTCCTGTCTTATTTAATGG-ATAAACTTTGATTTAAAG
324 GAACT-GAGACAGTTACGAGAATCGA-TTCTTGTCTTATTTAA-GGTATGAACTTT-ATTTAAAG
2447376 GAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAG
385 GAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAG
*
2447441 GAGAATATGTTTACAGTGCCTAATCA
450 GAGAATATGTTTATAGTGCCTAATCA
* * * *
2447467 CAAAATGAAGGAAGATCATTACTAGAATCCATGTTTATCTCTTTTGAAGCACGAACTTAGGCTTT
1 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAAGCACGAACTTAGACTTT
* * *
2447532 ACAAAAAATGATGAGAAAAAAGCCTTTCTTGC-AAAATGAAAGCATCAATATGATGTATCGTAAT
66 ACAAAAAATGATGAGAAAAAAGCCTTTCTTGCGAAACT-AAAGCATCAATACGATGTATCATAAT
*
2447596 GAGAAGACAATGTTTATGGTGCCTAATCCAGAAAAGAATGGGGATTAGTATGAGTATTCATGTTT
130 GAGAAGACAATGTTTATGGTGCCTAATCCGGAAAAGAATGGGGATTAGTATGAGTATTCATGTTT
*
2447661 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCAAC
195 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGAC
*
2447726 ATCAAAGCATCAATGTCATGTATCCTAATGAAGGGAAT-TTGTATTGGCTTCACAATCTTGAAAA
260 ATCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTT-TTTTGGCTTCACAATCTTGAAAA
* * * *
2447790 GAACTAAGACAGTTACGA-AATCGATACTTGTCTTATTTAAGGTATGAACATCATTTTAAAGGAA
324 GAACTGAGACAGTTACGAGAATCGATTCTTGTCTTATTTAAGGTATGAACTTTA-TTTAAAGGAA
** *
2447854 AATA-GGCAAAGAAAAGA-TTCCTATGCAAAAGAAAATCATCAATATCATTTATCCTTGTGAGGC
388 AATAGGGCAAAGAAAAGATTTCC-ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGA
*
2447917 GAATATGTTTATAGTACCTAATCA
452 GAATATGTTTATAGTGCCTAATCA
* * * * **
2447941 CAAAATGAATAAAGATCATTACTAGAATCCAGGTTTCTCTCATTTGAGGTGCGAACTTAGACTTT
1 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAAGCACGAACTTAGACTTT
* * * * * * * * *
2448006 ACAAAAAATGGTG-GGAAAATGCGTTTCTTGTGAAACGAAAGCATCATTACAATGTAT-ACTAAA
66 ACAAAAAATGATGAGAAAAAAGCCTTTCTTGCGAAACTAAAGCATCAATACGATGTATCA-TAAT
* * *
2448069 GAGAAGACAATGTTTATGTTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTT
130 GAGAAGACAATGTTTATGGTGCCTAATCCGGAAAAGAATGGGGATTAGTATGAGTATTCATGTTT
* * *
2448134 GTCATATTTAAGAGACAAACTTTGATTTTATCCAAAAC
195 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAC
2448172 TGATGACAAC
Statistics
Matches: 1008, Mismatches: 152, Indels: 44
0.84 0.13 0.04
Matches are distributed among these distances:
473 135 0.13
474 151 0.15
475 199 0.20
476 417 0.41
477 104 0.10
478 2 0.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (475 bp):
CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAAGCACGAACTTAGACTTT
ACAAAAAATGATGAGAAAAAAGCCTTTCTTGCGAAACTAAAGCATCAATACGATGTATCATAATG
AGAAGACAATGTTTATGGTGCCTAATCCGGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTG
TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACA
TCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTTTTTTGGCTTCACAATCTTGAAAAGA
ACTGAGACAGTTACGAGAATCGATTCTTGTCTTATTTAAGGTATGAACTTTATTTAAAGGAAAAT
AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
ATGTTTATAGTGCCTAATCA
Found at i:2447755 original size:159 final size:156
Alignment explanation
Indices: 2442160--2447756 Score: 450
Period size: 158 Copynumber: 35.3 Consensus size: 156
2442150 GAAAAATGCG
** * * * * *
2442160 TTTCTTGTGAAATGAAAGCATCAATATGATGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTT
1 TTTCTTGCAAAATCAAAGCATCAATATCATGTATCCTAATGAGAAGACAATGTTTATGGTGCCTA
* * ** **
2442225 ATCCTGAAAAGAATGGTGATTAGTATGAGTATTCATGTTTGCCTCGTTTAAGAGACAAACTTTGA
66 ATCCAGAAAAGAATGGAGATTAGTATGAGTATTCATGTTTATCTTATTTAAG-GACAAACTTTGA
* * *
2442290 TTCTATCAAAAATGATAGAACGAAAAGTT
130 TT-TA-CAAAAACGATGGAAGGAAAAGTT
* * ** **
2442319 TTTCTTGCAACATCAAAGCATCAATGTTGTGTATCCTAAT--GAAGGGAATGGGTTT-TGGGTTT
1 TTTCTTGCAAAATCAAAGCATCAATATCATGTATCCTAATGAGAAGACAAT--GTTTAT-GG---
* ** * ** * * * * *
2442381 TGGCTTCACAATCTTGAAAAGAACT-GAGA-CAGTTACAAGAATTGATGCTTGTCTTTTTTAAGG
60 T-GC--C-TAATCCAGAAAAGAA-TGGAGATTAG-TATGAGTATTCATGTTTATCTTATTTAA-G
** * ** * * *
2442444 GATGAACTTTGATTTAAAAGAAAATAAGGCAAAGAAAAG-A
118 GACAAACTTTGATTTACAA-AAACGATGG-AAGGAAAAGTT
* ** * * * * *
2442484 TTTCAATGCAAAAGAAAATCATCAATATCATTTATCCTAAT-A-AGGAGAATGCGTTTATAGTGC
1 TTTC-TTGCAAAATCAAAGCATCAATATCATGTATCCTAATGAGAAGACAAT--GTTTATGGTGC
* * * * * * * * * * * **
2442547 CTAATCACA-AAATGAATGAAGATCA-TTTCTAGAATCCACGTTTGTCTCATTTGAGGCACGGAC
63 CTAATC-CAGAAAAGAATGGAGATTAGTAT-GAGTATTCATGTTTATCTTATTTAAGG-ACAAAC
* ** **
2442610 TTAGACTTTA-AAAAATTTAGTGAGAA--AAAAGCC
125 TTTGA-TTTACAAAAA-CGA-TG-GAAGGAAAAGTT
* * * * *
2442643 TTACTTGCAAAA-CGAAAGAATCAATA-CGATGTATCCTAAAGAGAAAACAATGTTTATGTTGCC
1 TTTCTTGCAAAATC-AAAGCATCAATATC-ATGTATCCTAATGAGAAGACAATGTTTATGGTGCC
* * *
2442706 TAATCCAGAAAAGAATAGG-GGTTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGTCAAACTT
64 TAATCCAGAAAAGAAT-GGAGATTAGTATGAGTATTCATGTTTATCTTATTTAAG-GACAAACTT
*
2442770 TGATTCTACCAAAAACGGTGGAAGGAAAAGTT
127 TGATT-TA-CAAAAACGATGGAAGGAAAAGTT
* ** * ** * *
2442802 TTTCTTGCGATGTCAAAGCATCAATGTCATGTATCCTAAT--GAAGGGAATGTATCTTTGGTTCA
1 TTTCTTGCAAAATCAAAGCATCAATATCATGTATCCTAATGAGAAGACAATGT-T-TATGGTGC-
** * * * * * **
2442865 C-AATCTTGAAAAGAACTGGACAGT--TACGAG-AATCAATGCTTATCTTATTTAAGGGATGAAC
63 CTAATCCAGAAAAGAA-TGGAGATTAGTATGAGTATTC-ATGTTTATCTTATTTAA-GGACAAAC
* ** * * *
2442926 TCTGATTTA-AAGGAAAATAGGGCAAAGAAAAGAT
125 TTTGATTTACAA--AAACGATGG-AAGGAAAAGTT
** * ** * * * ** * *
2442960 TCCCATGCAAAAGAAAATCATCAATATCATTTATCCTAGTGAGGGGA-ATATGTTTGTAGTGCCT
1 TTTCTTGCAAAATCAAAGCATCAATATCATGTATCCTAATGAGAAGACA-ATGTTTATGGTGCCT
** * * ** ** * * *
2443024 AATCACA-AAATA-AATAAAGATCATTGCGAG-ATTCCCA-GTTTGCCTTAATTGAGGCACGAAC
65 AATC-CAGAAA-AGAATGGAGATTAGTATGAGTATT--CATGTTTATCTTATTTAAGG-ACAAAC
* * * *
2443085 TTAGACTTTAGAAAAA--ATGGTGAGAAAAAAGTT
125 TTTGA-TTTACAAAAACGATGG-AAG-GAAAAGTT
* * *
2443118 TTTCTTGCAAAA-CGAAAGCATGAATATGATGTATCGTAATGAGAAGACAATGTTTATGGTGCCT
1 TTTCTTGCAAAATC-AAAGCATCAATATCATGTATCCTAATGAGAAGACAATGTTTATGGTGCCT
2443182 AATCCAGAAAAGAATGG-GAATTAGTATGAGTATTCATGTTTATCTTATTTAAGAGACAAACTTT
65 AATCCAGAAAAGAATGGAG-ATTAGTATGAGTATTCATGTTTATCTTATTTAAG-GACAAACTTT
* *
2443246 GATTCTATCAAAAACGGTGGAAAGAAAAGTT
128 GATT-TA-CAAAAACGATGGAAGGAAAAGTT
** ** * * * ** * * **
2443277 TTTCTTGTGACCTCAAAGCATCAGTGTCATGCATCCTAATG-G-AGGGAATGTGTTTTAGCT-TA
1 TTTCTTGCAAAATCAAAGCATCAATATCATGTATCCTAATGAGAAGACAATGT-TTAT-GGTGCC
** * * * * **
2443339 TAATCTTGAAAAGAACT-GAGA-CAGTTACGAG-AATCGAT-TGTTGTCTTATTTAAGGTATGAA
64 TAATCCAGAAAAGAA-TGGAGATTAG-TATGAGTATTC-ATGT-TTATCTTATTTAAGG-ACAAA
* * * * *
2443400 CATCGTTTTA-AAGGAAA--ATAGGCAAAGAAAAG-A
124 CTTTGATTTACAA--AAACGAT-GG-AAGGAAAAGTT
* * ** * * * * ** * *
2443433 TTCCAATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGATTATGTTTATAGTGCTT
1 TTTC-TTGCAAAATCAAAGCATCAATATCATGTATCCTAATGAGAAGACAATGTTTATGGTGCCT
* * * * * * * * * * **
2443498 AATCACA-AAATGAATGAAGATCA-T-TGCTAGAATCCTTGATTGTCTCATTTGAAGCACGTACT
65 AATC-CAGAAAAGAATGGAGATTAGTATG--AGTATTCATGTTTATCTTATTT-AAGGACAAACT
* * **
2443560 TAGACTTTACAAAAAATGATGGGAA--AAAAGCC
126 TTGA-TTTAC-AAAAACGAT-GGAAGGAAAAGTT
* * * * * * ** * *
2443592 TTTCTTACGAAATGAAAGCATCAATATGATGTATCCTAAAGAGAGGATTATGTTTATGGTGCGTT
1 TTTCTTGCAAAATCAAAGCATCAATATCATGTATCCTAATGAGAAGACAATGTTTATGGTGCCTA
** * * * * *
2443657 ATCCTCAAAAGAATGGGGGTTAGTATGAGTATCCATGTTTGTTTTATTTAAGAGACAAACTTTGA
66 ATCCAGAAAAGAATGGAGATTAGTATGAGTATTCATGTTTATCTTATTTAAG-GACAAACTTTGA
*
2443722 TTCTATCAAAAAC-AGTGGAAGAAAAAGTT
130 TT-TA-CAAAAACGA-TGGAAGGAAAAGTT
** * ** * ** * *
2443751 TTT-TTGGTGACATCAAAGCATCAACGTCATGTCTCCTAAT--GAAGGGAATGTGTTTTGGCTTC
1 TTTCTT-GCAAAATCAAAGCATCAATATCATGTATCCTAATGAGAAGACAATGT-TTATGG-TGC
* ** * ** * * * * **
2443813 AC-AATCTTA-AAAAGAACT-GAGACAATTACAAG-AGTCAATGCTTGTCTTTTTTAAGGGATGA
63 -CTAATC-CAGAAAAGAA-TGGAGATTAGTATGAGTATTC-ATGTTTATCTTATTTAA-GGACAA
* ** ** * * *
2443874 ACATCAATTTA-AAGGAAAATAGGGCAAAGAAAAG-A
123 ACTTTGATTTACAA--AAACGATGG-AAGGAAAAGTT
* * * * * *
2443909 TTTCTATGCAAAA-AAAATCATCAATATCATTTATCCTAATGAG--GAGAATGCGCTTATAGTGC
1 TTTCT-TGCAAAATCAAAGCATCAATATCATGTATCCTAATGAGAAGACAAT--GTTTATGGTGC
* ** * * ** * * * * **
2443971 CTAATCACA-AAATGAATAAAGATCATTACT-AAAATCCACGTTTGTCTCATTTAAGGCACGCAC
63 CTAATC-CAGAAAAGAATGGAGATTAGTA-TGAGTATTCATGTTTATCTTATTTAAGG-ACAAAC
* * ** **
2444034 CTAGACTTTA-AAAAATTTAGTGGGAA--AAAAGCC
125 TTTGA-TTTACAAAAA-CGA-T-GGAAGGAAAAGTT
** * * * * * * *
2444067 TTTCTTGTGAAATGAAAGCATCAATA-CGATCTATCCTAAAGTGAAGACTATGTTTATGGTACCA
1 TTTCTTGCAAAATCAAAGCATCAATATC-ATGTATCCTAATGAGAAGACAATGTTTATGGTGCCT
* * * * *
2444131 AATTCAGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGACACAAATTTTG
65 AATCCAGAAAAGAATGGAGATTAGTATGAGTATTCATGTTTATCTTATTTAAG-GACAAACTTTG
* *
2444196 ATTCTATCAAAAACGGTGGAAAGAAAAGTT
129 ATT-TA-CAAAAACGATGGAAGGAAAAGTT
* * * * * ** * *
2444226 TTTCTTGCGACACCAAAGAATTAAT-TCCATGTATCCTAAT--GAAGGGAATGTGTTTTGGT-TC
1 TTTCTTGCAAAATCAAAGCATCAATAT-CATGTATCCTAATGAGAAGACAATGT-TTATGGTGCC
* **** ** * * * * * * * **
2444287 TGATTCTTCTAAAGAATGGAGATT-GTTACCAGAAATGATGCTTGTCATCTTTAAGGGATGAACT
64 T-AATCCAGAAAAGAATGGAGATTAG-TATGAGTATTCATGTTTATCTTATTTAA-GGACAAACT
** * * * *
2444351 TTGATTTA-AAGGAAAATAGGGCAAAGAAATGAT
126 TTGATTTACAA--AAACGATGG-AAGGAAAAGTT
* * ** * * * * * *
2444384 TTCCATGCAAAAGAAAATCATCAGTATCATTTATCCTAATGAGGAGA-ATGTGTTTATAGTGCCT
1 TTTCTTGCAAAATCAAAGCATCAATATCATGTATCCTAATGAGAAGACA-ATGTTTATGGTGCCT
* * * * * * * * * * * *
2444448 AATCACA-AAATGAATGAAGATCATTACT-AGAATCCAAGTTTGTCTCAATTGAGGCACGAACTT
65 AATC-CAGAAAAGAATGGAGATTAGTA-TGAGTATTCATGTTTATCTTATTTAAGG-ACAAACTT
* * ** *
2444511 AGACTTTATAAAAA--ATGGTGGGAAAAAAGCCT
127 TGA-TTTACAAAAACGATGGAAGG--AAAAG-TT
*
2444543 TTT-TTGCAAAA-CGAAAGCATCAAT-TGATGTATCCTAATGAGAAGACAATGTTTATGGTGCCT
1 TTTCTTGCAAAATC-AAAGCATCAATATCATGTATCCTAATGAGAAGACAATGTTTATGGTGCCT
* * *
2444605 AATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
65 AATCCAGAAAAGAATGGAGATTAGTATGAGTATTCATGTTTATCTTATTTAAG-GACAAACTTTG
* * *
2444670 ATTCTATCAAAAATGATAGAAGGAAAAATT
129 ATT-TA-CAAAAACGATGGAAGGAAAAGTT
* * * * * *
2444700 TTTCTTGCGACATCAAAGCATCAATGTCATGTATCCTAATGA-AGGGA-ATAGGTTT-TGGCTTC
1 TTTCTTGCAAAATCAAAGCATCAATATCATGTATCCTAATGAGA-AGACA-ATGTTTATGG-TGC
* * ** * * * * **
2444762 ATAATCCTGAAAAGAACAGAGA-CAGTTACGAG-AATCGAT-TCTTGTCTTATTTAAGGTATGAA
63 CTAATCCAGAAAAGAATGGAGATTAG-TATGAGTATTC-ATGT-TTATCTTATTTAAGG-ACAAA
* * * * *
2444824 CATCGTTTTA-AAGGAAA--ATAGGCAAAGAAAAG-A
124 CTTTGATTTACAA--AAACGAT-GG-AAGGAAAAGTT
* * * * * * * * *
2444857 TTCCAATGCAAAA-GAAATTCATCAATATCATTTCTCCTAATGAG--GAGAATGCGATTATAGTG
1 TTTC-TTGCAAAATCAAA-GCATCAATATCATGTATCCTAATGAGAAGACAAT--GTTTATGGTG
* * ** * * * * * * * * *
2444919 CCTAGTCACA-AAATGAATAAAGATCATTACT-AGAATCCACGTTTGTCTCATTTGAGGCACGAA
62 CCTAATC-CAGAAAAGAATGGAGATTAGTA-TGAGTATTCATGTTTATCTTATTTAAGG-ACAAA
* * * * ***
2444982 CCTAGACTTTA-AAAAATTTGGTGAGAA--AAAAAAC
124 CTTTGA-TTTACAAAAA--CGATG-GAAGGAAAAGTT
* * * *
2445016 TTTCTTGCGAAATGAAAGCATTAATATGATGTATCCTAATGAGAAGACAATGTTTATGGTGCCTA
1 TTTCTTGCAAAATCAAAGCATCAATATCATGTATCCTAATGAGAAGACAATGTTTATGGTGCCTA
* * * * * *
2445081 ATCCAGAAAAGAATGGGGATTAGTACGAGTATTCTTGATTGTCTTATTTAAGAGAGAAACTTTGA
66 ATCCAGAAAAGAATGGAGATTAGTATGAGTATTCATGTTTATCTTATTTAAG-GACAAACTTTGA
*
2445146 TTCTATCAAAAACGGTGGAAGGAAAAGTT
130 TT-TA-CAAAAACGATGGAAGGAAAAGTT
** * * * ** * * *
2445175 TTTCTTGTGACATCAAAGCATCAATGTCATGTATCCTGAT--GAAGGGAATGTGTTTTGGCTTCA
1 TTTCTTGCAAAATCAAAGCATCAATATCATGTATCCTAATGAGAAGACAATGT-TTATGG-TGCC
** * * * * * *
2445238 TAATCTTGAAAAGTGAT-GAG-TCAATTATGAGAATTGAT-TCTTGTCTTATTTAAGGA-ATGAA
64 TAATCCAGAAAAG-AATGGAGAT-TAGTATGAGTATTCATGT-TTATCTTATTTAAGGACA--AA
* * * **
2445299 CATTGTTTTA-AAGGAAA--ATAGGCAAAGAAAA-AA
124 CTTTGATTTACAA--AAACGAT-GG-AAGGAAAAGTT
* * ** * * * * * **
2445332 TTCCAATGCAAAAGAAAATCATTAATATTATTTATCCTAAAGAGAAG--AATGCGTTTATAATGC
1 TTTC-TTGCAAAATCAAAGCATCAATATCATGTATCCTAATGAGAAGACAAT--GTTTATGGTGC
* ** * * * * * * * * * *
2445395 CTAATCACA-AAATGAATAAATATCATTACT-AGAATCCACGTTTGTGTCATTTGAGGCACAAA-
63 CTAATC-CAGAAAAGAATGGAGATTAGTA-TGAGTATTCATGTTTATCTTATTTAAGG-ACAAAC
** * * **
2445457 TCCAGACTTTA-AAAAATTTGGTGGGAA--AAAAGCC
125 T-TTGA-TTTACAAAAA--CGAT-GGAAGGAAAAGTT
* * * *
2445491 TTTCTTGCGAAATGAAAGCATCAATACCATATATCCTAATGAGAAGACAATGTTTATGGTGCCTA
1 TTTCTTGCAAAATCAAAGCATCAATATCATGTATCCTAATGAGAAGACAATGTTTATGGTGCCTA
* * *
2445556 ATCCAGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTAA
66 ATCCAGAAAAGAATGGAGATTAGTATGAGTATTCATGTTTATCTTATTTAAG-GACAAACTTTGA
* *
2445621 TTCTATCATAAATA-G-TGGAAGGAAAAATG
130 TT-TA-CA-AAA-ACGATGGAAGGAAAAGTT
** ** * * * *
2445650 TTTCTTGTGACGTCAAAGCATCAATGTCATGTATCCTAATGA-AGGGA-ATAGGTTT-TGGCTTC
1 TTTCTTGCAAAATCAAAGCATCAATATCATGTATCCTAATGAGA-AGACA-ATGTTTATGG-TGC
* ** ** * * * * **
2445712 ATAATCTTGAAAAGAACAGAGA-CAGTTACGAG-AATCGAT-TCTTGTCTTATTTAAGGTATGAA
63 CTAATCCAGAAAAGAATGGAGATTAG-TATGAGTATTC-ATGT-TTATCTTATTTAAGG-ACAAA
* * * * *
2445774 CATCGTTTTA-AAGGAAA--ATAGGCAAAGAAAAG-A
124 CTTTGATTTACAA--AAACGAT-GG-AAGGAAAAGTT
* * * * * * * *
2445807 TTCCAATT-CAAAA-GAAATTCATCAATATCATTTCTCCTATTGAG--GAGAATGCGTTTATAGT
1 TTTC--TTGCAAAATCAAA-GCATCAATATCATGTATCCTAATGAGAAGACAAT--GTTTATGGT
* ** * * * * * * * *
2445868 GCCTAATCACA-AAATGAATAAAGATCATTACT-AGAATCCACGTTTGTGTTATTTGAGGCACAA
61 GCCTAATC-CAGAAAAGAATGGAGATTAGTA-TGAGTATTCATGTTTATCTTATTTAAGG-ACAA
*** * * **
2445931 ACCCAGACTTTA-AAAAATTTGGTGGGAA--AAAAGCC
123 ACTTTGA-TTTACAAAAA--CGAT-GGAAGGAAAAGTT
* * * *
2445966 TTTCTTGCGAAATGAAAGCATCAATACCATATATCCTAATGAGAAGACAATGTTTATGGTGCCTA
1 TTTCTTGCAAAATCAAAGCATCAATATCATGTATCCTAATGAGAAGACAATGTTTATGGTGCCTA
* * * *
2446031 ATCCAGAAAAGAATGGGGATTAGTATGGGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTAA
66 ATCCAGAAAAGAATGGAGATTAGTATGAGTATTCATGTTTATCTTATTTAAG-GACAAACTTTGA
* *
2446096 TTCTATCATAAATA-G-TGGAAGGAAAAATG
130 TT-TA-CA-AAA-ACGATGGAAGGAAAAGTT
** ** * * ** * *
2446125 TTTCTTGTGACGTCAAAGCATCAATGTCATGCATCCTAATG-G-AGGGAATGTGTTTTGGCTTCA
1 TTTCTTGCAAAATCAAAGCATCAATATCATGTATCCTAATGAGAAGACAATGT-TTATGG-TGC-
** * * * * ** * **
2446188 C-AATCTTGAAAGGAACT-AAGA-CAGTTACGAG-AAGCAAT-TCTTGTCTTATTTAAGGTATGA
63 CTAATCCAGAAAAGAA-TGGAGATTAG-TATGAGTATTC-ATGT-TTATCTTATTTAAGG-ACAA
* * * *
2446248 AC-ATCATTTTA-AAGGAAA--ATAGGCAAAGAAAAGAT
123 ACTTTGA-TTTACAA--AAACGAT-GG-AAGGAAAAGTT
*** ** * * * ** * *
2446283 TTAAATGCAAAAGAAAATCATCAATATTATTTATCCTAATGAGGTGA-ATATGTTTATAGTGGCT
1 TTTCTTGCAAAATCAAAGCATCAATATCATGTATCCTAATGAGAAGACA-ATGTTTATGGTGCCT
* * * * * * * * * *
2446347 AATCACA-AAATA-AATGAAGATCATTATTA--AATCTATGTTTGTCTCATTTGAGGCGCGAACT
65 AATC-CAGAAA-AGAATGGAGATTAGTATGAGTATTC-ATGTTTATCTTATTTAAGG-ACAAACT
* * * * * **
2446408 TAGACTTTATAAGAA--TTGGTAGGAAAAAAGCC
126 TTGA-TTTACAAAAACGATGGAAGG--AAAAGTT
* * * * * * * * * * *
2446440 TTTCTT-CTGAAATGAAGAGAAGACTATGTTTATGGTGA--CTAATCCAGAAAAGAATGGGGATT
1 TTTCTTGC-AAAATCAA-AGCA-TCAAT-ATCAT-GT-ATCCTAAT-GAGAAGACAAT---GTTT
* ** * * * * * * * * *
2446502 A-GTATG-AGAATTGCA-AAATGAATGAAGATCATTACT-AG-AATCCTAGTTTGTCTCATTTGA
56 ATG-GTGCCTAA-TCCAGAAAAGAATGGAGATTAGTA-TGAGTATTCAT-GTTTATCTTATTT-A
* * * ** **
2446562 AGCACGAACTTAGACTTTACAAAAAATAGTGAGAA--AAAAGCC
116 AGGACAAACTTTGA-TTTACAAAAACGA-TG-GAAGGAAAAGTT
** * *
2446604 TTTCTTGTGAAACCAAAGCATCAATA-CGATGTATCCTAATGAGAAGACAATGTTTAGGGTGCCT
1 TTTCTTGCAAAATCAAAGCATCAATATC-ATGTATCCTAATGAGAAGACAATGTTTATGGTGCCT
* * * * * * *
2446668 AATCCGGAAAAGAATGGGGATTAGTATTAGTATTCTTGTTTGTCTTATTTGAGAGATAAACTTTG
65 AATCCAGAAAAGAATGGAGATTAGTATGAGTATTCATGTTTATCTTATTTAAG-GACAAACTTTG
* *
2446733 ATTCTATCAAAAATGGTGGAAGGAAAAGTT
129 ATT-TA-CAAAAACGATGGAAGGAAAAGTT
** * * * * ** * *
2446763 TTTCTTGTGACATCAAAGCGTCAATGTCATGTATCTTAAT--GAAGGGAATGTGTTTTGGCTTCA
1 TTTCTTGCAAAATCAAAGCATCAATATCATGTATCCTAATGAGAAGACAATGT-TTATGG-TGC-
*** * * * ** * **
2446826 C-AATATTGAAAAGAACT-GAGA-CAGTTACGAGAATGGAT-TCTTGTCTTATTTAAGGTATGAA
63 CTAATCCAGAAAAGAA-TGGAGATTAG-TATGAGTATTCATGT-TTATCTTATTTAAGG-ACAAA
** * ** *
2446887 CATTT-ATTTA-AAGGAAAATAGGGCAAACAAAAGAT
124 C-TTTGATTTACAA--AAACGATGG-AAGGAAAAGTT
** * ** * * ** * *
2446922 TCCCATGCAAAAAAAAAATCATCAATATCATTTATCCTAATGAGGTGA-ATGTGTTTATAGTGCC
1 TTTCTTGC-AAAATCAAAGCATCAATATCATGTATCCTAATGAGAAGACA-ATGTTTATGGTGCC
* * * * * ** * * ** * * * **
2446986 TAATTACA-AAATA-AATGAATATCATTACT-AAAATCCATGCTCGTCTTACTTGAGGCGCGGA-
64 TAA-TCCAGAAA-AGAATGGAGATTAGTA-TGAGTATTCATGTTTATCTTATTTAAGG-ACAAAC
* * * **
2447047 TTTAGAGTTTACAAAAACTGGTAGAA-AAAAAGCC
125 TTT-GA-TTTACAAAAAC-GATGGAAGGAAAAGTT
* * * * * * *
2447081 TTTCTTGCGAAAT-AAGGCATCAATATGATGTATCATGGA-GAGAAGACTATGTTTATGGTGCGT
1 TTTCTTGCAAAATCAAAGCATCAATATCATGTATCCT-AATGAGAAGACAATGTTTATGGTGCCT
** * * * *
2447144 AATCTGGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTACCTTATTTAAGTGATAAACTTTG
65 AATCCAGAAAAGAATGGAGATTAGTATGAGTATTCATGTTTATCTTATTTAAG-GACAAACTTTG
* *
2447209 ATTCTATCAGAAGCGATGGAAGGAAAAGTT
129 ATT-TA-CAAAAACGATGGAAGGAAAAGTT
** * * * * ** * *
2447239 TTTCTTGGGACACCAAAGCATCAATTTCATGTATCCTGA-G-GAAGGGAATGTTTTTTG-GCTCT
1 TTTCTTGCAAAATCAAAGCATCAATATCATGTATCCTAATGAGAAGACAATGTTTATGGTGC-CT
* * * * * * * *
2447301 GATTCCCGTAAAGGATGGAGATT-GTTACGAG-AATCAAT-TTCCTGTCTTATTTAATGGATAAA
65 -AATCCAGAAAAGAATGGAGATTAG-TATGAGTATTC-ATGTT--TATCTTATTTAA-GGACAAA
** * * *
2447363 CTTTGATTTA-AAGGAAAATAGGGCAAAGAAAAGAT
124 CTTTGATTTACAA--AAACGATGG-AAGGAAAAGTT
* * ** * * * **
2447398 TTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA-ATATGTTTACAGTGCCT
1 TTTCTTGCAAAATCAAAGCATCAATATCATGTATCCTAATGAGAAGACA-ATGTTTATGGTGCCT
* * * * * * *
2447462 AATCACA-AAATGAA-GGAAGATCATTACT-AGAATCCATGTTTATCTCT-TTTGAAGCACGAAC
65 AATC-CAGAAAAGAATGG-AGATTAGTA-TGAGTATTCATGTTTATCT-TATTT-AAGGACAAAC
* * * **
2447523 TTAGGCTTTACAAAAAATGATGAGAA--AAAAGCC
125 TT-TGATTTAC-AAAAACGATG-GAAGGAAAAGTT
* * *
2447556 TTTCTTGCAAAATGAAAGCATCAATATGATGTATCGTAATGAGAAGACAATGTTTATGGTGCCTA
1 TTTCTTGCAAAATCAAAGCATCAATATCATGTATCCTAATGAGAAGACAATGTTTATGGTGCCTA
* *
2447621 ATCCAGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
66 ATCCAGAAAAGAATGGAGATTAGTATGAGTATTCATGTTTATCTTATTTAAG-GACAAACTTTGA
*
2447686 TTCTATCAAAAACGGTGGAAGGAAAAGTT
130 TT-TA-CAAAAACGATGGAAGGAAAAGTT
* *
2447715 TTTCTTGCAACATCAAAGCATCAATGTCATGTATCCTAATGA
1 TTTCTTGCAAAATCAAAGCATCAATATCATGTATCCTAATGA
2447757 AGGGAATTTG
Statistics
Matches: 3802, Mismatches: 1175, Indels: 922
0.64 0.20 0.16
Matches are distributed among these distances:
155 11 0.00
156 45 0.01
157 505 0.13
158 1594 0.42
159 1099 0.29
160 241 0.06
161 75 0.02
162 21 0.01
163 29 0.01
164 65 0.02
165 16 0.00
166 94 0.02
167 5 0.00
168 2 0.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (156 bp):
TTTCTTGCAAAATCAAAGCATCAATATCATGTATCCTAATGAGAAGACAATGTTTATGGTGCCTA
ATCCAGAAAAGAATGGAGATTAGTATGAGTATTCATGTTTATCTTATTTAAGGACAAACTTTGAT
TTACAAAAACGATGGAAGGAAAAGTT
Found at i:2453199 original size:42 final size:42
Alignment explanation
Indices: 2453144--2453262 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
2453134 TTCTTCTCTC
* *
2453144 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
2453186 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
2453228 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
2453263 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:2453203 original size:12 final size:11
Alignment explanation
Indices: 2453177--2453252 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
2453167 TCTATTATCT
*
2453177 CTCCTGTCTCTC
1 CTCCTATCTC-C
2453189 CTCCTATCATCC
1 CTCCTATC-TCC
2453201 CTCCTATCT--
1 CTCCTATCTCC
*
2453210 CTACTATCT--
1 CTCCTATCTCC
*
2453219 CTCCTGTCTCTC
1 CTCCTATCTC-C
2453231 CTCCTATCATCC
1 CTCCTATC-TCC
*
2453243 CTCCTCTCTC
1 CTCCTATCTC
2453253 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:2453204 original size:24 final size:24
Alignment explanation
Indices: 2453168--2453253 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
2453158 CCTCCTCTCT
* *
2453168 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
2453192 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
2453213 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
2453234 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
2453254 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:2453228 original size:18 final size:18
Alignment explanation
Indices: 2453159--2453229 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
2453149 CCTGTCATCC
* *
2453159 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
2453177 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
2453199 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
2453219 CTCCTGTCTCT
1 CTCCTGTCTCT
2453230 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:2455753 original size:470 final size:471
Alignment explanation
Indices: 2454843--2456084 Score: 1569
Period size: 470 Copynumber: 2.6 Consensus size: 471
2454833 CTTTGTTTTC
*
2454843 ATCAAAAACGGTGGAAGGAAAAGTGTTTCTTGTGACCACAAAGCATCAATTTCATGTATCTTAAT
1 ATCAAAAACGGTGGAAGGAAAAGTGTTTCTTGTGACC-CAAAGCATCAATTTCATGTATCCTAAT
* * * * **
2454908 GAAGGGAATGTGTTTTGGCTTCACAATAT-TGA-AAAGAACT-AAGACAGTTACGAGAATGGATT
65 GAAGGGAATGTTTTTTGGC-TC-TAAT-TCTCATAAAGAA-TGGAGATTGTTACGAGAATGGATT
* *
2454970 CTTGTCTTATTTAAGGTATGAACACTTATTTAAAGGAAAATAGGGCAAACAAAGGATTCCCATGC
126 CTTGTCTTATTTAAGGTATGAACATTTATTTAAAGGAAAATAGGGCAAACAAAAGATTCCCATGC
* *
2455035 AAAAAAAAAATCATCAATATCATTTATCCTAATGAGGTGAATGTGTTTATAGTGCCTAATTACAA
191 -AAAAGAAAATCATCAATATCATTTATCCTAATGAGGTGAATGTGTTTAAAGTGCCTAA-TACAA
* * * * * * ** *
2455100 AATGAATGAATATCATTACTAAAATCCATGCTCGTCT-TATTTGAGGCGCGATTTTAGAGTTTAC
254 AATG-A-GAAGATCATTACTAGAATCCATGTTTGTCTCTATTTGAAGCACGAGCTTAGACTTTAC
* * * * **
2455164 AAAAACTGGTAGAAAAAAAGCCTTTCTTGCGAAATAAGGCATCAATATGATGTATCATGGAGAGA
317 AAAAAATGGTAGAAAAAAAGCCTTTCTTGCAAAAGAAAGCATCAATATGATGTATCATAAAGAGA
* **
2455229 AGACTATGTTTATGGTGCCTAATCTGGAAAAGAATGGGGAATAGTATGAGTATTCATGTTTGCCT
382 AGACTATGTTTATGGTGCCTAATCTGGAAAAGAATAGGGAATAGTACAAGTATTCATGTTTGCCT
* * *
2455294 TATTTAAGACATAAACTTTGATTCT
447 TATTTAAGAAACAAACTTTGACTCT
* * * * * *
2455319 ATCAAAAACGATGGAAAGAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCAAAA
1 ATCAAAAACGGTGGAAGGAAAAGTGTTTCTTGTGAC-CCAAAGCATCAATTTCATGTATCCTAAT
* * *
2455384 GAAGGGAATGTTTTTTGGCTCTAATTCTCTTAAAGAATGGAGATTGTTACGAGAATCGATGCTTG
65 GAAGGGAATGTTTTTTGGCTCTAATTCTCATAAAGAATGGAGATTGTTACGAGAATGGATTCTTG
* * * * *
2455449 TCTTATTTATGGGATGAAC-TTTGATTTAAAGGAAAATAGGGCAGAGAAAAGATTTCCATGCAAA
130 TCTTATTTAAGGTATGAACATTT-ATTTAAAGGAAAATAGGGCAAACAAAAGATTCCCATGCAAA
* * * *
2455513 AGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGCGTTTACAGTGCCTAAT-C-AAA-G-
194 AGAAAATCATCAATATCATTTATCCTAATGAGGTGAATGTGTTTAAAGTGCCTAATACAAAATGA
2455574 GAAGATCATTACTAGAATCCATGTTTGTCTCT-TTTGAAGCACGAGCTTAGACTTTACAAAAAAA
259 GAAGATCATTACTAGAATCCATGTTTGTCTCTATTTGAAGCACGAGCTTAGACTTTAC--AAAAA
*
2455638 ATGGTGGGAAAAAAA-CCTTTCTTGCAAAAAGAAAGCATCAATATGATGTATTC-TAAAGAGAAG
322 ATGGT-AGAAAAAAAGCCTTTCTTGC-AAAAGAAAGCATCAATATGATGTA-TCATAAAGAGAAG
* * *
2455701 ACTATGTTTATGGTGCCTAATTTGGAAAAGAATAGGGATTAGTACAAGTATTCATGTTTGTCTTA
384 ACTATGTTTATGGTGCCTAATCTGGAAAAGAATAGGGAATAGTACAAGTATTCATGTTTGCCTTA
2455766 TTTAAGAAACAAACTTTGACTCT
449 TTTAAGAAACAAACTTTGACTCT
* * * *
2455789 ATAAAAAATGGTGGAAGGAAAAGTGTTTCTTTTGACCCCAGAGCATCAATTTCATGTATCCTAAT
1 ATCAAAAACGGTGGAAGGAAAAGTGTTTCTTGTGA-CCCAAAGCATCAATTTCATGTATCCTAAT
* * * *
2455854 GAAGGAAATG-TGTTTGTCTCCTAA-TCTCATAAAGAAAGGAGATTGTTACGAGAATGGATTCTT
65 GAAGGGAATGTTTTTTGGCT-CTAATTCTCATAAAGAATGGAGATTGTTACGAGAATGGATTCTT
* * *
2455917 GTATTGTTTAAGGTATGAACATTTATTTAAAGGAAAATAGGGCAAACAAAAGATTCCCACGCAAA
129 GTCTTATTTAAGGTATGAACATTTATTTAAAGGAAAATAGGGCAAACAAAAGATTCCCATGCAAA
* * *
2455982 AGAAAATCATCAATATCGTTTATCCTAAAGAGGTGAATGTGTTTAAAGTGTCTAATCACAAAATG
194 AGAAAATCATCAATATCATTTATCCTAATGAGGTGAATGTGTTTAAAGTGCCTAAT-ACAAAATG
*
2456047 AATGAAGATCATTACTAGAATCCAAGTTTGTCTC-ATTT
258 -A-GAAGATCATTACTAGAATCCATGTTTGTCTCTATTT
2456085 AAGACGCAAC
Statistics
Matches: 658, Mismatches: 86, Indels: 44
0.84 0.11 0.06
Matches are distributed among these distances:
467 46 0.07
468 1 0.00
469 163 0.25
470 186 0.28
471 7 0.01
472 4 0.01
473 3 0.00
474 60 0.09
475 80 0.12
476 107 0.16
477 1 0.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (471 bp):
ATCAAAAACGGTGGAAGGAAAAGTGTTTCTTGTGACCCAAAGCATCAATTTCATGTATCCTAATG
AAGGGAATGTTTTTTGGCTCTAATTCTCATAAAGAATGGAGATTGTTACGAGAATGGATTCTTGT
CTTATTTAAGGTATGAACATTTATTTAAAGGAAAATAGGGCAAACAAAAGATTCCCATGCAAAAG
AAAATCATCAATATCATTTATCCTAATGAGGTGAATGTGTTTAAAGTGCCTAATACAAAATGAGA
AGATCATTACTAGAATCCATGTTTGTCTCTATTTGAAGCACGAGCTTAGACTTTACAAAAAATGG
TAGAAAAAAAGCCTTTCTTGCAAAAGAAAGCATCAATATGATGTATCATAAAGAGAAGACTATGT
TTATGGTGCCTAATCTGGAAAAGAATAGGGAATAGTACAAGTATTCATGTTTGCCTTATTTAAGA
AACAAACTTTGACTCT
Found at i:2457485 original size:475 final size:476
Alignment explanation
Indices: 2456098--2460878 Score: 5596
Period size: 475 Copynumber: 10.2 Consensus size: 476
2456088 ACGCAACCCA
2456098 AAAGCATCAATATGATGTATCCTAATGAGAAGACAATGTTTATGGTGCCTAATCCGGAAAAGAAT
1 AAAGCATCAATATGATGTATCCTAATGAGAAGACAATGTTTATGGTGCCTAATCCGGAAAAGAAT
* *
2456163 GGGGATTAGTATGAGTATTCATATTTGTCTTATATAAGAGACAAACTTTGATTCTATCAAAAACG
66 GGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACG
* * * * * * *
2456228 GTGGAAGGAAAAGTTTTTCTTGCAACATCAAGGCATCAATATCATGTATCCTAATAAAGGGAATT
131 ATGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATG
* * *
2456293 TGTTTTGGCTTCACAATCTTGAAAAGAACTAAGACTGTTACGAGAATCAATTCTTGTCTTATTTA
196 TGTTTTGGCTTCACAATCTTGAAAAGAACTGAGACAGTTACGAGAATCGATTCTTGTCTTATTTA
* * *
2456358 AGGTATGAAC-ATCATTTTAAAGGAAAATA-GGCAAAGAAAAGATTCCCATGCAAAAGAAAATCA
261 AGGTATGAACTTTGA-TTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCA
* * * *
2456421 TCAATATCATTTATCCTAGTGAGGCGAATATGTTTATAGTACCTAATCACAAAATGAGTGAAGAT
325 TCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGAT
2456486 CATTACTAGAATCCAAGTTTGTCTCATTTGAGACGC--GAACTTAGACTTTACAAAAAATGGTGG
390 CATTACTAGAATCCAAGTTTGTCTCATTTGA-A-GCATGAACTTAGACTTTACAAAAAATGGTGG
* ** *
2456549 GAAAAATGTGTTTCTTGCGAAACG
453 GAAAAAAGCCTTTCTTGCAAAACG
* * ** * * * * * *
2456573 AAAGCATCATTTTTTTGTATCCTAAAGAGAAGCCTATGTTTATGGTGCCTTATCCTGAAAAAAAT
1 AAAGCATCAATATGATGTATCCTAATGAGAAGACAATGTTTATGGTGCCTAATCCGGAAAAGAAT
* * *
2456638 GGGGATTAGTATGAGTATTCATGTTTATCTTATTTAAGAGAAAAACTTTGATTCTATCTAAAACG
66 GGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACG
* * * * *
2456703 ATGGAAAGAAAAGTTTTTTTTTGCAACACCAAAG---C-A--TCA-GTATCCTAATAAAGAGAAT
131 ATGGAAGGAAAAG-TTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAAT
* * * * *
2456761 GTGTTTTGGCTTCACAATCTTGAAAAGAACTGAGAAAATTATGAGAATCGATGCTTGTCTTTTTT
195 GTGTTTTGGCTTCACAATCTTGAAAAGAACTGAGACAGTTACGAGAATCGATTCTTGTCTTATTT
* * * **
2456826 AAGGGATGAACTTTTATTTAAAGAAAAATAGGGCAAAGAAAAGATTTTTATGCAAAA-AAAATCA
260 AAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCA
* * * * *
2456890 TTAATATCATTTATCCTAATAAGGGGAATATGTTTGTAGTGCCTAATCCCAAAATGAATGAAGAT
325 TCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGAT
* * *
2456955 CATTACCAGAATCCAAGTTTGTCTTATTT-AAGGCATGAACTTAGACTTTACAAAAAATGGTGAG
390 CATTACTAGAATCCAAGTTTGTCTCATTTGAA-GCATGAACTTAGACTTTACAAAAAATGGTGGG
*
2457019 AAAAAAGCCTTTCTTGCAAAACA
454 AAAAAAGCCTTTCTTGCAAAACG
*
2457042 AAAGCATCAATATGATGTATCGTAATGAGAAGACAATGTTTATGGTGCCTAATCCGGAAAAGAAT
1 AAAGCATCAATATGATGTATCCTAATGAGAAGACAATGTTTATGGTGCCTAATCCGGAAAAGAAT
* * * *
2457107 GGGAATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAGAAGCG
66 GGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACG
* *
2457172 ATGGAAGGAAAAGTTTTTCTTAG-GACACCAAAGCATCAATTTCATGTATCCTAAGGAAGGGAAT
131 ATGGAAGGAAAAGTTTTTCTT-GCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAAT
* * ** * * ** *
2457236 GTTTTTTGGC-TC-CGATTCCCGTAAAGGA-TGGAGATTGTTACGAGAATCAATGTC-TGTCTTA
195 GTGTTTTGGCTTCAC-AATCTTGAAAAGAACT-GAGACAGTTACGAGAATCGAT-TCTTGTCTTA
* *
2457297 TTTAAGGGATAAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
257 TTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
* *
2457362 TCATCAATATCATTTATCCTAATGAGGAGAATATATTTATAGTGCCTAATCACAAAATGAAGGAA
322 TCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAA
* * * * *
2457427 GATCATTACTAGAATCCATGTTTATCTCTTTTGAAGCATGAACTTAGGCTTTACAAAAAATGATG
387 GATCATTACTAGAATCCAAGTTTGTCTCATTTGAAGCATGAACTTAGACTTTACAAAAAATGGTG
* * * * *
2457492 AGAAGAAAGCTTTTCTTGCGAAATG
452 GGAAAAAAGCCTTTCTTGCAAAACG
* *
2457517 AAAGCATCAATATGATGTATCGTAATGAGAAGACAATGTTTATGGTGCCTAATCCAGAAAAGAAT
1 AAAGCATCAATATGATGTATCCTAATGAGAAGACAATGTTTATGGTGCCTAATCCGGAAAAGAAT
*
2457582 GGGGATTAGTATGAGTATTCATGTTTTTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACG
66 GGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACG
* * *
2457647 GTGGAAGGAAAAGTTTTTCTTGCGACATCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATT
131 ATGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATG
* * *
2457712 TGTATTGGCTTCACAATCTTGAAAAGAACTAAGACAGTTACGA-AATCGATACTTGTCTTATTTA
196 TGTTTTGGCTTCACAATCTTGAAAAGAACTGAGACAGTTACGAGAATCGATTCTTGTCTTATTTA
* *
2457776 AGGTATGAAC-ATCATTTTAAAGGAAAATA-GGC-------A-A-----A-G-AAAAG---AT--
261 AGGTATGAACTTTGA-TTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCA
** * *
2457819 TCAATATCATTTATCCTTGTGAGGCGAATATGTTTATAGTACCTAATCACAAAATGAATGAAGAT
325 TCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGAT
* * * * * ** *
2457884 TATTACTAGAATCTAGGTTTCTCTCATTTGAGGCGCGAACTTAGACTTTACAAAAAATTGTGGG-
390 CATTACTAGAATCCAAGTTTGTCTCATTTGAAGCATGAACTTAGACTTTACAAAAAATGGTGGGA
* * **
2457948 AAAATGCGTTTCTTGTGAAACG
455 AAAAAGCCTTTCTTGCAAAACG
* ** * * * * *
2457970 AAAGCATCATTACAATGTATACTAAAGAGAAGACAATGTTTATGTTGCCTTATCCTGAAAAGAAT
1 AAAGCATCAATATGATGTATCCTAATGAGAAGACAATGTTTATGGTGCCTAATCCGGAAAAGAAT
* *
2458035 GGGGATTAGTATGAGTATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTTTATCAAAAACG
66 GGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACG
* * * * * *
2458100 GTGGAAGGAAAAGTGTTTCTTGTGAC-CACAAAGCATCAATTTCATGTATCCTATTGAGGGGAAT
131 ATGGAAGGAAAAGTTTTTCTTGCGACAC-CAAAGCATCAATGTCATGTATCCTAATGAAGGGAAT
* * * ** ** **
2458164 GTG-TTT-GCCTCGCAATC-TCATAAAGAAAGGAGATTGTTACGAGAATTAATTCTTGTCTTATT
195 GTGTTTTGGCTTCACAATCTTGA-AAAGAACTGAGACAGTTACGAGAATCGATTCTTGTCTTATT
* * * *
2458226 TAAGGGATGAGCTTTGATTTTAAGGAAAATAGGGCAAAG-AAA-ATTTCCATGCAAAAGAAAATT
259 TAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATC
* * * *
2458289 ATCAATTTCATTTATCCTAATGAGGGGAATGTGTTTATAGTGCCTAATCACAAAATGAAAGAAGA
324 ATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGA
* * * *
2458354 TCATTACTAGAATCCAAGTTTGCCTCATTTGAGGTACGAACTTAGACTTTATC-AAAAATGGTGG
389 TCATTACTAGAATCCAAGTTTGTCTCATTTGAAGCATGAACTTAGACTTTA-CAAAAAATGGTGG
2458418 GAAAAAAGCCTTTCTTGCAAAACG
453 GAAAAAAGCCTTTCTTGCAAAACG
* * ** *
2458442 AAAGCATCGATATGATGTATCCTACTGAGAAGACAATGTTTATAATGCCTAATCCGAAAAAGAAT
1 AAAGCATCAATATGATGTATCCTAATGAGAAGACAATGTTTATGGTGCCTAATCCGGAAAAGAAT
* *
2458507 GGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAAAAACTTTGATTCTATCGAAAAC-
66 GGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACG
* * *
2458571 AGTGGAAAGAAAAGTTTTTCTTGGGACACCAAAGCATCAATTTCATGTATCCTAAT-AACGGGAA
131 A-TGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAA-GGGAA
* * * * * * * *
2458635 AGTGTTTTGGCTTCACAATCTTTAAAAGAATTGAAACAATTGCGAGAATCGATGCTTGTCTTTTT
194 TGTGTTTTGGCTTCACAATCTTGAAAAGAACTGAGACAGTTACGAGAATCGATTCTTGTCTTATT
* * *** * *
2458700 TAAGGGATGAACTTTAATTTAAAGGAAAATAGGGCAAAGAAAAGATTTTTGTGCAGAAGAAAATT
259 TAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATC
* * ** * *
2458765 ATTAATATCATTTATCTTAATGAGGAGAATGCGTTTATATTGCCTAATCGCAAAATGAATGAAGA
324 ATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGA
* * * *
2458830 TTATTACTAGAATCCACGTTTGTCTCATCTG-AGACATGAACTTAGACTTTA-AAAAATTTGGTG
389 TCATTACTAGAATCCAAGTTTGTCTCATTTGAAG-CATGAACTTAGACTTTACAAAAA-ATGGTG
*
2458893 GGAAAAAA-CCTTTCTTGCAAAATG
452 GGAAAAAAGCCTTTCTTGCAAAACG
** * * *
2458917 AAAGCATCAATACT-ATGTATCCTAAAAAGAAGACAATGTTTATGTTGCCTTATCCCGAAAAGAA
1 AAAGCATCAATA-TGATGTATCCTAATGAGAAGACAATGTTTATGGTGCCTAATCCGGAAAAGAA
* * * * * *
2458981 TGGGGATTAGTACGTGTATTCATGTTTGTCTTATTTAAGAAACAAACTTTGACTCTATAAAAAAT
65 TGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAC
* * * **
2459046 GATGGAAGGAAAAGTGTTTCTT-CTGACCCCAAAGCATCAATTTCATGTATCCTAATGAAGAAAA
130 GATGGAAGGAAAAGTTTTTCTTGC-GACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAA
* * * ** ** * *
2459110 TGTG-TTTGTC-TCCCAATC-TCATAAAGAAAGGAGATTGTTACGAGAATGGATTCTTGTATTAT
194 TGTGTTTTGGCTTCACAATCTTGA-AAAGAACTGAGACAGTTACGAGAATCGATTCTTGTCTTAT
* * *
2459172 TTAAGGTATGAACATTT-ATTTAAAGGAAAATAGGGCAAACAAAAGATTCCCACGCAAAAGAAAA
258 TTAAGGTATGAAC-TTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
* * * * * *
2459236 TCATCAATAGCGTTTATCCTAAAGAGGTGAATGTGTTTAAAGTGCCTAATCACAAAATGAATGAA
322 TCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAA
* *
2459301 GATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTATC-AAAAATGGT
387 GATCATTACTAGAATCCAAGTTTGTCTCATTTGAAGCATGAACTTAGACTTTA-CAAAAAATGGT
2459365 GGGAAAAAAGCCTTTCTTGCAAAACG
451 GGGAAAAAAGCCTTTCTTGCAAAACG
* * *
2459391 AAAGCATCAAGATGATGTATCCTAATGAGAAGACAATGTTTATAGTGCCTAATCC-GAAAAAAAT
1 AAAGCATCAATATGATGTATCCTAATGAGAAGACAATGTTTATGGTGCCTAATCCGGAAAAGAAT
* * *
2459455 GAGGG-TTTGTATGAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAAT
66 G-GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAC
* * *
2459519 GGTGGAAGGAAAAGTTTTTCTTGCGACATC-AAGCATCAATGTCATGTATCCTAAGGAAGGGAAT
130 GATGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAAT
* * * * *
2459583 GTGGTTTGGCTTCATAATCTTGAAAAGAACTGAGACAATTACGAGGATCGATTCTTGTCTTATCT
195 GTGTTTTGGCTTCACAATCTTGAAAAGAACTGAGACAGTTACGAGAATCGATTCTTGTCTTATTT
* *
2459648 AAGGTATGAA-TATCGTTTTAAAGGAAAATAGGG-AAAGAAAAGA-TTCCAATGCAAAA-AAAAT
260 AAGGTATGAACT-TTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCC-ATGCAAAAGAAAAT
* ** *
2459709 CATCAATATGATTTATCCTAATGAGGAGAATGCGTTTATAGTGCCTAATCATAAAATGAATGAAG
323 CATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAG
* * * * *
2459774 ATCATTACTAGAATCCACGTTTGTCTCATTTGAGGCATGAACCTAGACTTTA-AAAAATTTAGTG
388 ATCATTACTAGAATCCAAGTTTGTCTCATTTGAAGCATGAACTTAGACTTTACAAAAA-ATGGTG
* *
2459838 GGAAAAAAGCCTTTCTTGCGAAATG
452 GGAAAAAAGCCTTTCTTGCAAAACG
* *
2459863 AAAGCATCAATACGATGTATCCTAATGAGAAGACAATGTTTATGATGCC---T----------A-
1 AAAGCATCAATATGATGTATCCTAATGAGAAGACAATGTTTATGGTGCCTAATCCGGAAAAGAAT
* * *
2459914 ----ATTAGTATGAGTATTCGTGTTTGTCTTATTTAAGAGAAAAACTTTGATTCTATCAAAAATG
66 GGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACG
* * * *
2459975 GTGGAAGGAAAAGTGTTTCTTGTGACATCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATG
131 ATGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATG
* * * *
2460040 TGTTTTGGCCTCACAATCTTGAAAAGAATTGAGACAGTTACAAGAATCGATTCTTGTCTTA-TGA
196 TGTTTTGGCTTCACAATCTTGAAAAGAACTGAGACAGTTACGAGAATCGATTCTTGTCTTATTTA
* *
2460104 A--CAT---C-AT--TTTAAAGGAAAATA-GGCAAAGAAAAGA-TTCCAATGCAAAAGAAAATCA
261 AGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCC-ATGCAAAAGAAAATCA
* * * *** *
2460159 TCAATATCATTTATCCTAATGAGTAGAACATGTTCATAGTGCCTAATCGTGAAATGAAGGAAGAT
325 TCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGAT
* * *
2460224 CATTACTAGAATCCAAGTTTTTCTCATTTGAAGCATGAACTTAGACTTTACAAAAAAATAGTGAG
390 CATTACTAGAATCCAAGTTTGTCTCATTTGAAGCATGAACTTAGACTTTAC-AAAAAATGGTGGG
*
2460289 AAAAAAGCCATTCTTGCAAAACG
454 AAAAAAGCCTTTCTTGCAAAACG
* * * * * * * * * * *
2460312 AAAGCATCAATACGTTGTATCCGGAA-GAGAAAACTATGATTGTAGTACCTTATCCTGAAAAGAA
1 AAAGCATCAATATGATGTATCC-TAATGAGAAGACAATGTTTATGGTGCCTAATCCGGAAAAGAA
* *
2460376 TGGGGATTAGTATGAGTATTCATGTTTATCTTATTTAAGAGACAAACTTTGACTCTATCAAAAAC
65 TGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAC
* * * *
2460441 GGA-AGAAGGAAAAGTTTTTCTTGTGACATCAAAGCATCAATGTCAT-TATCTTAATGAAGGGAA
130 -GATGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAA
* * *
2460504 TGTGTTTTGACTTCACAATCTTGAGAAGAACTGAGACAGTTTACGAGAATCGATACTTGTCTTAT
194 TGTGTTTTGGCTTCACAATCTTGAAAAGAACTGAGACAG-TTACGAGAATCGATTCTTGTCTTAT
* * * * *
2460569 TTAAGGTATGAACATTGA-TTGAGGGAAAATAGGGCAAACAAAAGATTCCCATGCAAAAGAAAAT
258 TTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAAT
* * *
2460633 CATCAATATCAATTATCCTAATGAGGTGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
323 CATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAG
* * * *** * * *
2460698 ATCATTACTAGAATCCATGTTTGTCAT-TTTTGAGGCGCAAACTTAGACTTTACGAAAACTGGTA
388 ATCATTACTAGAATCCAAGTTTGTC-TCATTTGAAGCATGAACTTAGACTTTACAAAAAATGGTG
** *
2460762 GGAAAAAAGCCTTTCTTGTGAAA-T
452 GGAAAAAAGCCTTTCTTGCAAAACG
* * * * *
2460786 AAAGCATCAACATGATGTATCATGAA-GAGAAGACTATGTTTATGGTGCCTAATCTGAAAAAGAA
1 AAAGCATCAATATGATGTATCCT-AATGAGAAGACAATGTTTATGGTGCCTAATCCGGAAAAGAA
* *
2460850 TAGGGATTAGTATGAGTATTAATGTTTGT
65 TGGGGATTAGTATGAGTATTCATGTTTGT
2460879 ATTTGATGAG
Statistics
Matches: 3670, Mismatches: 514, Indels: 245
0.83 0.12 0.06
Matches are distributed among these distances:
446 2 0.00
447 37 0.01
448 109 0.03
449 63 0.02
450 9 0.00
451 25 0.01
452 42 0.01
453 201 0.05
454 111 0.03
455 85 0.02
456 90 0.02
459 7 0.00
460 2 0.00
461 1 0.00
462 1 0.00
464 1 0.00
465 1 0.00
466 57 0.02
467 122 0.03
468 21 0.01
469 362 0.10
470 30 0.01
471 118 0.03
472 412 0.11
473 317 0.09
474 394 0.11
475 746 0.20
476 298 0.08
477 6 0.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (476 bp):
AAAGCATCAATATGATGTATCCTAATGAGAAGACAATGTTTATGGTGCCTAATCCGGAAAAGAAT
GGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACG
ATGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATG
TGTTTTGGCTTCACAATCTTGAAAAGAACTGAGACAGTTACGAGAATCGATTCTTGTCTTATTTA
AGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCAT
CAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATC
ATTACTAGAATCCAAGTTTGTCTCATTTGAAGCATGAACTTAGACTTTACAAAAAATGGTGGGAA
AAAAGCCTTTCTTGCAAAACG
Found at i:2457644 original size:158 final size:156
Alignment explanation
Indices: 2456098--2457703 Score: 633
Period size: 158 Copynumber: 10.2 Consensus size: 156
2456088 ACGCAACCCA
* *
2456098 AAAGCATCAATATGATGTATCCTAATGAGAAGACAATGTTTATGGTGCCTAATCCGGAAAAGAAT
1 AAAGCATCAATATCATGTATCCTAATGAGAAGACAATGTTTATGGTGCCTAATCCAGAAAAGAAT
* * * *
2456163 GGGGATTAGTATGAGTATTCATATTTGTCTTATATAAGAGACAAACTTTGATTCTATCAAAAACG
66 GGAGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT-TA-CAAAAATG
* * *
2456228 GTGGAAGGAAAAGTTTTTCTTGC-AACATC
129 ATGGAA-GAAAAGCTTTTCTTGCGAA-ACC
* ** * **
2456257 AAGGCATCAATATCATGTATCCTAAT-A-AAGGGAATTTGTTT-TGGCTTCAC-AATCTTGAAAA
1 AAAGCATCAATATCATGTATCCTAATGAGAAGACAA--TGTTTATGG-TGC-CTAATCCAGAAAA
* * * * ** * *
2456318 GAACT-AAGACT-GTTACGAG-AATCAAT-TCTTGTCTTATTTAAG-GTATGAAC-ATCATTTTA
62 GAA-TGGAGATTAG-TATGAGTATTC-ATGT-TTGTCTTATTTAAGAG-ACAAACTTTGA-TTTA
* * ** * * **
2456377 AAGGAAAAT-A-GGCAAAGAAAAGATTCCCATGCAAAAGA
121 CA--AAAATGATGG--AAGAAAAGCTTTTCTTGCGAAACC
* * * ** * * *
2456415 AAATCATCAATATCATTTATCCTAGTGAGGCGA-ATATGTTTATAGTACCTAATCACA-AAATGA
1 AAAGCATCAATATCATGTATCCTAATGAGAAGACA-ATGTTTATGGTGCCTAATC-CAGAAAAGA
* * * * * * * * * * *
2456478 GTGAAGATCATTACT-AGAATCCAAGTTTGTCTCATTTGAGACG-CGAACTTAGACTTTACAAAA
64 ATGGAGATTAGTA-TGAGTATTCATGTTTGTCTTATTTAAGA-GACAAACTTTGA-TTTAC-AAA
* * *
2456541 AATGGTGGGAA-AAATG-TGTTTCTTGCGAAACG
125 AATGAT-GGAAGAAAAGCT-TTTCTTGCGAAACC
* * ** * * * * * *
2456573 AAAGCATCATTTTTTTGTATCCTAAAGAGAAGCCTATGTTTATGGTGCCTTATCCTGAAAAAAAT
1 AAAGCATCAATATCATGTATCCTAATGAGAAGACAATGTTTATGGTGCCTAATCCAGAAAAGAAT
* * * * *
2456638 GGGGATTAGTATGAGTATTCATGTTTATCTTATTTAAGAGAAAAACTTTGATTCTATCTAAAACG
66 GGAGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT-TA-CAAAAATG
* *
2456703 ATGGAAAGAAAAGTTTTTTTTTGC-AACACC
129 ATGG-AAGAAAAG-CTTTTCTTGCGAA-ACC
* * * **
2456733 AAAG---C---ATCA-GTATCCTAAT-A-AAGAGAATGTGTTTTGGCTTCAC-AATCTTGAAAAG
1 AAAGCATCAATATCATGTATCCTAATGAGAAGACAATGT-TTATGG-TGC-CTAATCCAGAAAAG
** * * * * * ** * *
2456788 AACT-GAGAAAATTATGAG-AATCGATGCTTGTCTTTTTTAAGGGATGAACTTTTATTTAAAGAA
63 AA-TGGAGATTAGTATGAGTATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGATTT--ACAA
* * **
2456851 AAAT-AGGGCAAAGAAAAGATTTT-TATGC-AAAAA
124 AAATGATGG--AAGAAAAGCTTTTCT-TGCGAAACC
* * * * ** * * *
2456884 AAATCATTAATATCATTTATCCTAATAAGGGGA-ATATGTTTGTAGTGCCTAATCCCA-AAATGA
1 AAAGCATCAATATCATGTATCCTAATGAGAAGACA-ATGTTTATGGTGCCTAAT-CCAGAAAAGA
* * * ** * * * *
2456947 ATGAAGATCATTACCAGAATCCAAGTTTGTCTTATTTAAG-G-CATGAACTTAGACTTTACAAAA
64 ATGGAGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACA--AACTTTGA-TTTAC-AAA
* * * *
2457010 AATGGTGAGAA-AAAAGCCTTTCTTGCAAAACA
125 AATGATG-GAAGAAAAGCTTTTCTTGCGAAACC
* * *
2457042 AAAGCATCAATATGATGTATCGTAATGAGAAGACAATGTTTATGGTGCCTAATCCGGAAAAGAAT
1 AAAGCATCAATATCATGTATCCTAATGAGAAGACAATGTTTATGGTGCCTAATCCAGAAAAGAAT
* * **
2457107 GG-GAATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAGAAGC
66 GGAG-ATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT-TA-CAAAAAT
* *
2457171 GATGGAAGGAAAAGTTTTTCTTAG-GACACC
128 GATGGAA-GAAAAGCTTTTCTT-GCGAAACC
* ** * * * * * *
2457201 AAAGCATCAATTTCATGTATCCTAA-G-GAAGGGAATGTTTTTTGGCT-CCGATTCCCGTAAAGG
1 AAAGCATCAATATCATGTATCCTAATGAGAAGACAATG-TTTATGG-TGCCTAATCCAGAAAAGA
* * * * * *
2457263 ATGGAGATT-GTTACGAG-AATCAATGTCTGTCTTATTTAAGGGATAAACTTTGATTTAAAGGAA
64 ATGGAGATTAG-TATGAGTATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGATTTACA--AA
* * * * * **
2457326 AAT-AGGGCAAAGAAAAGATTTCCATGCAAAAGA
125 AATGATGG--AAGAAAAGCTTTTCTTGCGAAACC
* * * * * *
2457359 AAATCATCAATATCATTTATCCTAATGAGGAGA-ATATATTTATAGTGCCTAATCACA-AAATGA
1 AAAGCATCAATATCATGTATCCTAATGAGAAGACA-ATGTTTATGGTGCCTAATC-CAGAAAAGA
* * * * * * * *
2457422 A-GGAAGATCATTACT-AGAATCCATGTTTATCTCT-TTTGA-AG-CATGAACTTAGGCTTTACA
64 ATGG-AGATTAGTA-TGAGTATTCATGTTTGTCT-TATTTAAGAGACA--AACTT-TGATTTAC-
**
2457482 AAAAATGATGAGAAG-AAAGCTTTTCTTGCGAAATG
122 AAAAATGATG-GAAGAAAAGCTTTTCTTGCGAAACC
* *
2457517 AAAGCATCAATATGATGTATCGTAATGAGAAGACAATGTTTATGGTGCCTAATCCAGAAAAGAAT
1 AAAGCATCAATATCATGTATCCTAATGAGAAGACAATGTTTATGGTGCCTAATCCAGAAAAGAAT
* * *
2457582 GGGGATTAGTATGAGTATTCATGTTTTTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACG
66 GGAGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT-TA-CAAAAATG
* * * *
2457647 GTGGAAGGAAAAGTTTTTCTTGCGACATC
129 ATGGAA-GAAAAGCTTTTCTTGCGAAACC
*
2457676 AAAGCATCAATGTCATGTATCCTAATGA
1 AAAGCATCAATATCATGTATCCTAATGA
2457704 AGGGAATTTG
Statistics
Matches: 1045, Mismatches: 279, Indels: 246
0.67 0.18 0.16
Matches are distributed among these distances:
151 12 0.01
152 22 0.02
153 71 0.07
154 4 0.00
156 1 0.00
157 75 0.07
158 555 0.53
159 254 0.24
160 46 0.04
161 5 0.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (156 bp):
AAAGCATCAATATCATGTATCCTAATGAGAAGACAATGTTTATGGTGCCTAATCCAGAAAAGAAT
GGAGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTACAAAAATGAT
GGAAGAAAAGCTTTTCTTGCGAAACC
Found at i:2461459 original size:13 final size:13
Alignment explanation
Indices: 2461441--2461481 Score: 73
Period size: 13 Copynumber: 3.2 Consensus size: 13
2461431 TGGCGCCATC
*
2461441 CTTCATCTCTTAT
1 CTTCATCTCTAAT
2461454 CTTCATCTCTAAT
1 CTTCATCTCTAAT
2461467 CTTCATCTCTAAT
1 CTTCATCTCTAAT
2461480 CT
1 CT
2461482 ATTCCAGTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.20, C:0.32, G:0.00, T:0.49
Consensus pattern (13 bp):
CTTCATCTCTAAT
Found at i:2462706 original size:475 final size:473
Alignment explanation
Indices: 2461599--2463122 Score: 2005
Period size: 475 Copynumber: 3.2 Consensus size: 473
2461589 GTTGTTATCA
* *
2461599 GTCTTATTTAAGAGACAAACTTTGATTCTATCAGAAACGGTGGAAAGAAAAGTTTTTCTTGTGAC
1 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGTTTTTCTTGCGAC
* * * *
2461664 ATCAAAGCATCAATGTCATGTATCCTAATTAAGAGAATGTGTTCTGGCTTCATAATCTTGAAAAG
66 ATCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCACAATCTTGAAAAG
* * *
2461729 AACTGAGACAGTTTACGAGTATCGATTCTTGTCTTATCTAAGGTATGAACATCATTTTAAAGGAA
131 AACTGAGACAG-TTACGAGAATCGATTCTTGTCTTATTTAAGGTATGAACATCGTTTTAAAGGAA
* *
2461794 AATAGGCAAAGAAAAGATTCCAATGCAAAACAAAATCATCAATATCATTTATCCTAATGGGGAGA
195 AATAGGCAAAGAAAAGATTCCAATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA
** * ** * *
2461859 ATGCGATTACAGTACCTAATCATGAAATGAATGAAGATCAATACTAGAAT-TCACGTTTGTCTCA
260 ATATG-TTACAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCT-AAGTTTGTCTCA
* * * *
2461923 TTTGAGGCATGAACCTAGACTTTA-AAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAATGAAAG
323 TTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGAGAAAAAAGCCTTTCTTGCGAAA-GAAAG
* * *
2461987 CATCAATAC-----AT-CGTAATGAGAAGACAATGTTTATGGTGCCTAATCCGAAAAAGAATTGG
387 CATCAATACGATGTATCCG-AAAGAGAAGACTATGTTTATGGTGCCTAATCCGAAAAAGAATAGG
2462046 GATTAGTATGAGTATTCATGTTT
451 GATTAGTATGAGTATTCATGTTT
* * * * * * * *
2462069 GTCTTATTTTAGGGACAAACTTTAATTCTATCAAAAATGGTGGAAGGAAAAGTGTTTCTTGTGAT
1 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGTTTTTCTTGCGAC
* * *
2462134 GTCAAAGCATCAATGTCATGTATCCTACTGAAGGGAATGTGTTTTGGCTTCACAATCTTAAAAAG
66 ATCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCACAATCTTGAAAAG
* * * *
2462199 AATTGAGACAGTTACGAGAATCGATTCTTGTCTTATTTACGGCATGAACACCGTTTTAAAGGAAA
131 AACTGAGACAGTTACGAGAATCGATTCTTGTCTTATTTAAGGTATGAACATCGTTTTAAAGGAAA
* *
2462264 ATAGGCAAAGAAAAGATTCCAATGCAAAAGAAAGTCATCAATATTATTTATCCTAATGAGGAGAA
196 ATAGGCAAAGAAAAGATTCCAATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
* *
2462329 TATGTTCATAGTGCCTAATCGCAAAATGAATGAAGATCATTACTAGAATCTAAGTTTGTCTCATT
261 TATGTT-ACAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCTAAGTTTGTCTCATT
* * * *
2462394 TAAAGCACGAACTTAGACTTTACAAAAAATAGTGAGAAAAAAGGCTTTCTTGCGAAACGAAAGCA
325 TGAGGCACGAACTTAGACTTTACAAAAAATGGTGAGAAAAAAGCCTTTCTTGCGAAA-GAAAGCA
* * * * * * *
2462459 TCAATACGATGTATCCGAAAGAGAAAACTATGATTATAGTACCTTATCCTG-AGAAGAATGGGGA
389 TCAATACGATGTATCCGAAAGAGAAGACTATGTTTATGGTGCCTAATCC-GAAAAAGAATAGGGA
2462523 TTAGTATGAGTATTCATGTTT
453 TTAGTATGAGTATTCATGTTT
* * * * *
2462544 ATCTTATTTAAGAGATAAACTTTGATTCTATCAAAAACGGAGGAAGGACAAGTTTTTCTTGCGAC
1 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGTTTTTCTTGCGAC
* * * *
2462609 ATCAAAGCGTCAATGTCATTTATCTTAATGAAGGGAATGTGTTTTAGCTTCACAATCTTGAAAAG
66 ATCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCACAATCTTGAAAAG
* * * * *
2462674 AACTAAGACAGTTACGAGAATCGATGCTTGTCTTATTTAAGGTATGAACATTGATTGAAAGGAAA
131 AACTGAGACAGTTACGAGAATCGATTCTTGTCTTATTTAAGGTATGAACATCGTTTTAAAGGAAA
* * * * *
2462739 ATATGGCAAACAAAAGATTCCCATGTAAAAGAAAATCGTCAATATCATTTATCCTAATGAGGTGA
196 ATA-GGCAAAGAAAAGATTCCAATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA
* *
2462804 ATATGTTTACAGTGCCTAATCACAAAATGAATGAAGATCATTACTA-ATATCCATGTTTGTCTCA
260 ATATG-TTACAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGA-ATCTAAGTTTGTCTCA
** * * * *
2462868 TTTGAGGTGCAAACTTAGACTTTACAAAAACTGGT-AGGAAAAAAGCCTTTCTAGCGAAATAAAG
323 TTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGA-GAAAAAAGCCTTTCTTGCGAAAGAAAG
* *
2462932 CATCAATATGATGTATCATG-AAGAGAAGACTATGTTTATGGTGCCTAATCCGAAAAAGAATAGG
387 CATCAATACGATGTATC-CGAAAGAGAAGACTATGTTTATGGTGCCTAATCCGAAAAAGAATAGG
2462996 GATTAGTATGAGTATTCATGTTT
451 GATTAGTATGAGTATTCATGTTT
* * *
2463019 GTCTTATTTAAGAGATAAACTATGATTCTATCAAAAACGGTGGAAAGAAAAG-TTTTCTTGC-AA
1 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGTTTTTCTTGCGAC
* * * *
2463082 AACAAAAGCATCAATTTCATGTATCCGAAAGAAGGGAATGT
66 ATC-AAAGCATCAATGTCATGTATCCTAATGAAGGGAATGT
2463123 TTGTCTCTTT
Statistics
Matches: 914, Mismatches: 123, Indels: 30
0.86 0.12 0.03
Matches are distributed among these distances:
468 2 0.00
469 178 0.19
470 170 0.19
473 3 0.00
474 41 0.04
475 357 0.39
476 161 0.18
477 2 0.00
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.30
Consensus pattern (473 bp):
GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGTTTTTCTTGCGAC
ATCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCACAATCTTGAAAAG
AACTGAGACAGTTACGAGAATCGATTCTTGTCTTATTTAAGGTATGAACATCGTTTTAAAGGAAA
ATAGGCAAAGAAAAGATTCCAATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
TATGTTACAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCTAAGTTTGTCTCATTT
GAGGCACGAACTTAGACTTTACAAAAAATGGTGAGAAAAAAGCCTTTCTTGCGAAAGAAAGCATC
AATACGATGTATCCGAAAGAGAAGACTATGTTTATGGTGCCTAATCCGAAAAAGAATAGGGATTA
GTATGAGTATTCATGTTT
Found at i:2468552 original size:12 final size:12
Alignment explanation
Indices: 2468532--2468608 Score: 62
Period size: 12 Copynumber: 6.9 Consensus size: 12
2468522 AAGAGAAAGA
2468532 AGAGATAGGAGG
1 AGAGATAGGAGG
2468544 -GATGATAGGAGG
1 AGA-GATAGGAGG
2468556 AGAGAT---AGG
1 AGAGATAGGAGG
*
2468565 AGAGATAGTA--
1 AGAGATAGGAGG
*
2468575 A-AGATGGGAGG
1 AGAGATAGGAGG
2468586 -GATGATAGGAGG
1 AGA-GATAGGAGG
2468598 AGAGATAGGAG
1 AGAGATAGGAG
2468609 AGATAATAAA
Statistics
Matches: 52, Mismatches: 3, Indels: 20
0.69 0.04 0.27
Matches are distributed among these distances:
9 15 0.29
10 1 0.02
11 3 0.06
12 29 0.56
13 4 0.08
ACGTcount: A:0.40, C:0.00, G:0.47, T:0.13
Consensus pattern (12 bp):
AGAGATAGGAGG
Found at i:2468586 original size:42 final size:42
Alignment explanation
Indices: 2468534--2468641 Score: 173
Period size: 42 Copynumber: 2.6 Consensus size: 42
2468524 GAGAAAGAAG
* *
2468534 AGATAGGAGGGATGATAGGAGGAGAGATAGGAGAGATAGTAA
1 AGATGGGAGGGATGATAGGAGGAGAGATAGGAGAGATAATAA
2468576 AGATGGGAGGGATGATAGGAGGAGAGATAGGAGAGATAATAA
1 AGATGGGAGGGATGATAGGAGGAGAGATAGGAGAGATAATAA
*
2468618 AGA-GAGGAGGGATGACAGGAGGAG
1 AGATG-GGAGGGATGATAGGAGGAG
2468642 GAGAGAAGAA
Statistics
Matches: 62, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
41 1 0.02
42 61 0.98
ACGTcount: A:0.42, C:0.01, G:0.45, T:0.12
Consensus pattern (42 bp):
AGATGGGAGGGATGATAGGAGGAGAGATAGGAGAGATAATAA
Found at i:2479828 original size:18 final size:18
Alignment explanation
Indices: 2479787--2479829 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
2479777 CCATCTTCTC
2479787 CTCTCCTCCTCTTATCAT
1 CTCTCCTCCTCTTATCAT
* *
2479805 CCCTCCT-CTCTTTATTAT
1 CTCTCCTCCTC-TTATCAT
2479823 CTCTCCT
1 CTCTCCT
2479830 ATCTCTCCTC
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 3 0.14
18 18 0.86
ACGTcount: A:0.09, C:0.44, G:0.00, T:0.47
Consensus pattern (18 bp):
CTCTCCTCCTCTTATCAT
Found at i:2479842 original size:12 final size:12
Alignment explanation
Indices: 2479825--2479884 Score: 79
Period size: 12 Copynumber: 5.0 Consensus size: 12
2479815 TTTATTATCT
2479825 CTCCTATCTCTC
1 CTCCTATCTCTC
2479837 CTCCTATCATCT-
1 CTCCTATC-TCTC
2479849 CTCCTATCTCTC
1 CTCCTATCTCTC
*
2479861 TTCCTATCATCT-
1 CTCCTATC-TCTC
2479873 CTCCTATCTCTC
1 CTCCTATCTCTC
2479885 TATGGGTAGG
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
11 6 0.14
12 30 0.71
13 6 0.14
ACGTcount: A:0.12, C:0.45, G:0.00, T:0.43
Consensus pattern (12 bp):
CTCCTATCTCTC
Found at i:2479885 original size:24 final size:24
Alignment explanation
Indices: 2479821--2479885 Score: 121
Period size: 24 Copynumber: 2.7 Consensus size: 24
2479811 TCTCTTTATT
*
2479821 ATCTCTCCTATCTCTCCTCCTATC
1 ATCTCTCCTATCTCTCTTCCTATC
2479845 ATCTCTCCTATCTCTCTTCCTATC
1 ATCTCTCCTATCTCTCTTCCTATC
2479869 ATCTCTCCTATCTCTCT
1 ATCTCTCCTATCTCTCT
2479886 ATGGGTAGGT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 40 1.00
ACGTcount: A:0.12, C:0.43, G:0.00, T:0.45
Consensus pattern (24 bp):
ATCTCTCCTATCTCTCTTCCTATC
Found at i:2482058 original size:159 final size:157
Alignment explanation
Indices: 2481895--2482719 Score: 461
Period size: 159 Copynumber: 5.2 Consensus size: 157
2481885 GTATCCATGT
*
2481895 TTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCG
1 TTGTCTTATTTAAG-GACGAACTTTGATTTTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCG
* * * *
2481960 ACATCAAAGCATCAATTTCATATCTCCTAATGAAGGGAATGTGTTTTAGCTTTACAATCTTGAAA
65 AAATCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGTGTTTTAGCTTCACAATC-TGAAA
* *
2482025 AGAACTGAGACAGTTACGAGAATTGATGC
129 AGAAATGAGACAGTTATGAGAATTGATGC
* * * ** * ** * *
2482054 TTGTCTTTTTTAAGGGATGAACTTTGATTTAAAGGAAAATA-GG-GCAAAAAAAAGATTTTCATG
1 TTGTCTTATTTAA-GGACGAACTTTGATTT-TATCAAAA-ACGGTGGAAGGAAAAGTTTTTCTTG
* ** * * * * ** *
2482117 CAAAAGAAAACCATCAATATCATTTATCTTAATG-AGGAGAATGCATTTATAG-TGTC-TAATCT
63 CGAAATCAAAGCATCAATTTCATGTATCCTAATGAAGG-GAATGTGTTT-TAGCT-TCACAATCT
* * * *
2482179 CAAAATAAATGCAGATCA-TTACT-AGAATCT-ACGT
125 GAAAAGAAATG-AGA-CAGTTA-TGAGAAT-TGATGC
** * * * *** ***
2482213 TTGTCTCGTTTGAGGCACGAACCTAGACTTTTA-CAAATTTGGTGGGAA--AAAAACCTTTCTTG
1 TTGTCTTATTTAAGG-ACGAACTTTGA-TTTTATCAAAAACGGT-GGAAGGAAAAGTTTTTCTTG
* * * * * *
2482275 CGAAATGAAAGCATCAA-TACGATGTACCCTAAATAGAA--GACTATG-TTTATG-TTGC-CTTA
63 CGAAATCAAAGCATCAATTTC-ATGTATCCT-AAT-GAAGGGAATGTGTTTTA-GCTT-CAC-AA
* * * * *
2482334 TCCTGAAAAG-AATGGGGATTAG-TATGAGTATTCATGT
122 T-CTGAAAAGAAAT-GAGA-CAGTTATGAGAATTGATGC
* * * * *
2482371 TTGTCATATTTAAGAGACAAACTTTGAATCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTACG
1 TTGTCTTATTTAAG-GACGAACTTTGATTTTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCG
* ** * *
2482436 ATATCAAAGTGTCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGCTTCAAAATCTTGAAA
65 AAATCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGTGTTTTAGCTTCACAATC-TGAAA
** * * *
2482501 AGATCTTAGACAGTTATGAGAATCGATTC
129 AGAAATGAGACAGTTATGAGAATTGATGC
* * ** * **
2482530 TTGTCTTATTTAAGGTACGAACATCG-TTTTAAAAGAAAATGGTGGAAGGAAAAGTTTTTCTTAT
1 TTGTCTTATTTAAGG-ACGAACTTTGATTTTATCA-AAAACGGTGGAAGGAAAAGTTTTTCTTGC
*** * * *
2482594 GACCCCAAAGAATCAATTTCATGTATCCTAATGAAGGGAATGTGTTTTAGC-TCCCAATCTCATA
64 GAAATCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGTGTTTTAGCTTCACAATCTGA-A
* **
2482658 AAGAAAGGAGATTGTTATGAGAATTGATGC
128 AAGAAATGAGACAGTTATGAGAATTGATGC
2482688 TTGTCTTATTTAAGGGATC-AACTTTGATTTTA
1 TTGTCTTATTTAA-GGA-CGAACTTTGATTTTA
2482720 AGGAAAATAG
Statistics
Matches: 488, Mismatches: 132, Indels: 92
0.69 0.19 0.13
Matches are distributed among these distances:
156 3 0.01
157 20 0.04
158 153 0.31
159 280 0.57
160 30 0.06
161 2 0.00
ACGTcount: A:0.35, C:0.13, G:0.19, T:0.33
Consensus pattern (157 bp):
TTGTCTTATTTAAGGACGAACTTTGATTTTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGA
AATCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGTGTTTTAGCTTCACAATCTGAAAAG
AAATGAGACAGTTATGAGAATTGATGC
Found at i:2482466 original size:476 final size:476
Alignment explanation
Indices: 2481454--2482544 Score: 1459
Period size: 476 Copynumber: 2.3 Consensus size: 476
2481444 GGTTCTCATA
* * ** ** * * **
2481454 AAAAATGGTGGAAAGAAAAGTTTTTCTTGTGACCCCAAAGAATCAATTTCAGGTATCCTAATGAA
1 AAAAACGGTGGAAGGAAAAGTTTTTCTTACGACATCAAAGCATCAATGTCATATATCCTAATGAA
** * ** ** ** **
2481519 AAGAATGTGTTTTGGC-TCCCAATC-CCATAAAGAAAGGAGATTGTTACGAGAATTGATGCTTGT
66 GGGAATGTGTTTTAGCTTCAAAATCTTGA-AAAGAACTGAGACAGTTACGAGAATTGATGCTTGT
** *
2481582 CTTATTTAAGGGATGAACTATGATTTTTAGGAAAATAGGGCAAAGAAAAGATTTTCAAACAAAAG
130 CTTATTTAAGGGATGAACTATGATTTAAAGGAAAATAGGGCAAAAAAAAGATTTTCAAACAAAAG
* * ** *
2481647 AAAATCATCAATATCTTTTATCCAAATGAGGAGAATGTGTTTATAGTGCCAAATCACAAAATGAA
195 AAAACCATCAATATCATTTATCCAAATGAGGAGAATGCATTTATAGTGCCAAATCACAAAATAAA
* *
2481712 TGAAGATCATTACTAGAATCCAAGTTTGTCTCAATTGAAGCATGAACTTAGACTTTACAAAAAAT
260 TGAAGATCATTACTAGAATCCAAGTTTGTCTCAATTGAAGCACGAACCTAGACTTTACAAAAAAT
* * * *
2481777 GGTGGGAAAAAAGCCTTTCTTGCGAAACGAAAGCATCAATATGATGTATCCTAAAGAGAGGACAA
325 GGTGGGAAAAAAACCTTTCTTGCGAAACGAAAGCATCAATACGATGTACCCTAAAGAGAAGACAA
* *
2481842 TGTTTATGGTGCCATATCCTGAAAAGAATGGGGGTTAGTATGAGTATCCATGTTTGTCTTATTTA
390 TGTTTATGGTGCCATATCCTGAAAAGAATGGGGATTAGTATGAGTATCCATGTTTGTCATATTTA
* *
2481907 AGAGACAAACTTTGATTTTATC
455 AGAGACAAACTTTGAATCTATC
* * *
2481929 AAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACATCAAAGCATCAATTTCATATCTCCTAATGAA
1 AAAAACGGTGGAAGGAAAAGTTTTTCTTACGACATCAAAGCATCAATGTCATATATCCTAATGAA
* *
2481994 GGGAATGTGTTTTAGCTTTACAATCTTGAAAAGAACTGAGACAGTTACGAGAATTGATGCTTGTC
66 GGGAATGTGTTTTAGCTTCAAAATCTTGAAAAGAACTGAGACAGTTACGAGAATTGATGCTTGTC
* * **
2482059 TTTTTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAAAAAAGATTTTCATGCAAAAGA
131 TTATTTAAGGGATGAACTATGATTTAAAGGAAAATAGGGCAAAAAAAAGATTTTCAAACAAAAGA
** * * *
2482124 AAACCATCAATATCATTTATCTTAATGAGGAGAATGCATTTATAGTGTCTAATCTCAAAATAAAT
196 AAACCATCAATATCATTTATCCAAATGAGGAGAATGCATTTATAGTGCCAAATCACAAAATAAAT
* * * ** * **
2482189 GCAGATCATTACTAGAATCTACGTTTGTCTCGTTTGAGGCACGAACCTAGACTTTTAC-AAATTT
261 GAAGATCATTACTAGAATCCAAGTTTGTCTCAATTGAAGCACGAACCTAGAC-TTTACAAAAAAT
* * *
2482253 GGTGGGAAAAAAACCTTTCTTGCGAAATGAAAGCATCAATACGATGTACCCTAAATAGAAGACTA
325 GGTGGGAAAAAAACCTTTCTTGCGAAACGAAAGCATCAATACGATGTACCCTAAAGAGAAGACAA
* * *
2482318 TGTTTATGTTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCATATTTA
390 TGTTTATGGTGCCATATCCTGAAAAGAATGGGGATTAGTATGAGTATCCATGTTTGTCATATTTA
2482383 AGAGACAAACTTTGAATCTATC
455 AGAGACAAACTTTGAATCTATC
* ** *
2482405 AAAAACGGTGGAAGGAAAAGTTTTTCTTACGATATCAAAGTGTCAATGTCATGTATCCTAATGAA
1 AAAAACGGTGGAAGGAAAAGTTTTTCTTACGACATCAAAGCATCAATGTCATATATCCTAATGAA
* * * * *
2482470 GGGAATGTGTTTTAGCTTCAAAATCTTGAAAAGATCTTAGACAGTTATGAGAATCGATTCTTGTC
66 GGGAATGTGTTTTAGCTTCAAAATCTTGAAAAGAACTGAGACAGTTACGAGAATTGATGCTTGTC
2482535 TTATTTAAGG
131 TTATTTAAGG
2482545 TACGAACATC
Statistics
Matches: 537, Mismatches: 76, Indels: 5
0.87 0.12 0.01
Matches are distributed among these distances:
475 69 0.13
476 462 0.86
477 6 0.01
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (476 bp):
AAAAACGGTGGAAGGAAAAGTTTTTCTTACGACATCAAAGCATCAATGTCATATATCCTAATGAA
GGGAATGTGTTTTAGCTTCAAAATCTTGAAAAGAACTGAGACAGTTACGAGAATTGATGCTTGTC
TTATTTAAGGGATGAACTATGATTTAAAGGAAAATAGGGCAAAAAAAAGATTTTCAAACAAAAGA
AAACCATCAATATCATTTATCCAAATGAGGAGAATGCATTTATAGTGCCAAATCACAAAATAAAT
GAAGATCATTACTAGAATCCAAGTTTGTCTCAATTGAAGCACGAACCTAGACTTTACAAAAAATG
GTGGGAAAAAAACCTTTCTTGCGAAACGAAAGCATCAATACGATGTACCCTAAAGAGAAGACAAT
GTTTATGGTGCCATATCCTGAAAAGAATGGGGATTAGTATGAGTATCCATGTTTGTCATATTTAA
GAGACAAACTTTGAATCTATC
Found at i:2483351 original size:472 final size:475
Alignment explanation
Indices: 2482565--2484669 Score: 2631
Period size: 472 Copynumber: 4.5 Consensus size: 475
2482555 GTTTTAAAAG
** * * *
2482565 AAAATGGTGGAAGGAAAAGTTTTTCTTATGACCCCAAAGAATCAATTTCATGTATCCTAATGAAG
1 AAAATGGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAAGGAAG
* * * * *
2482630 GGAATGTGTTTTAGCTCCCAATCTCATAAAGAA-AGGAGATTGTTATGAGAATTGATGCTTGTCT
66 GGAATGTGTTTTGGCTCCGATTCTCGTAAAGAATA-GAGATTGTTATGAGAATCGATGCTTGTCT
* * * * *
2482694 TATTTAAGGGATCAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATGCAAAAGAG
130 TATTTAAGGGATGAACTTTCATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAA
* * * *
2482759 AATCATCAATATCTTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCAAATCATAAAATGAATG
195 AATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATG
* * * *
2482824 AAGATCATTACTAAAATCCAAGTTTGTCTCATTTAAAGCATGGACTTAGACTTTACAAAAAATGG
260 AAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAAGCACGAACTTAGACTTTACAAAAAATGG
*
2482889 TGGGAAAAAAGCCTTTCTTACGAAACG-AA-ATCAATATGATGTATCCTAAAGAG-AGAACTATG
325 TGGGAAAAAAGCCTTTCTTACGAAACGAAAGATCAATATGATGTATCCTAAAGAGAAG-ACAATG
* * * *
2482951 TTTGTGGTGCCTTATCCTGAAAAGAATGGTGG-TTAGTATGAGTATCCATGTTTGTCTTATTTAA
389 TTTATGGTGCCTAATCCAGAAAAGAATGGTGGATTAGTATGAGTATTCATGTTTGTCTTATTTAA
*
2483015 GAGACAAGCTTTGATTCTATCA
454 GAGACAAACTTTGATTCTATCA
* * * * * *
2483037 AAAACGGTGGAAGGAAAAGTTTTTCTTGCGACATCAATGTATAAATTTCATGTATCCTAAGGAAA
1 AAAATGGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAAGGAAG
* * *
2483102 GGAATGTGTTTCGGCTCCGATTCTCGTAAAGAATAGAGATTGTTACGAGAAGCGATGCTTGTCTT
66 GGAATGTGTTTTGGCTCCGATTCTCGTAAAGAATAGAGATTGTTATGAGAATCGATGCTTGTCTT
* * * *
2483167 ATTTAAGGGATGGACTTTCATTTAAAGGACAATAGGGCAAAGAAAAGATTTTCTTGCAAAAGAAA
131 ATTTAAGGGATGAACTTTCATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
** * * * *
2483232 ATTGTCAATATCATTTGTCCTAGTGAGGAGAATATGTTTACAGTGACTAATCACAAAATGAATGA
196 ATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGA
* * * *
2483297 AGATCATTACTAGAATCAAAGTTTGTCTCATTTGAGGCACAAACTTAAACTTTACAAAAAATGGT
261 AGATCATTACTAGAATCCAAGTTTGTCTCATTTGAAGCACGAACTTAGACTTTACAAAAAATGGT
* * ***
2483362 GGGAAAAAAGACTTTCTTACGAAACGAAAGCATCAATATGATGTATCTTATTTAGAAGACAATGT
326 GGGAAAAAAGCCTTTCTTACGAAACGAAAG-ATCAATATGATGTATCCTAAAGAGAAGACAATGT
* * * * * * *
2483427 TTATGGTGCCGAATCCAGAGAAGAATGG-AGATTACTATGAGTATTCATGCTTGTTTTATTTAAA
390 TTATGGTGCCTAATCCAGAAAAGAATGGTGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAG
*
2483491 AGACAAACTTTGATTCTATAAA
455 AGACAAACTTTGATTCTAT-CA
* * *
2483513 AAAATGATGGAAGGAAAAGTTTTTCTTGCGACAGCAAAGCGTCAATTTCATGTATCCTAAGGAAG
1 AAAATGGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAAGGAAG
* * * * ** *
2483578 GAAATGTGTTTTGGCTTCAC-AATCTTGAAAAGAACT-GAGACAGTTATGAGAATCGATGCCTGT
66 GGAATGTGTTTTGGC-TC-CGATTCTCGTAAAGAA-TAGAGATTGTTATGAGAATCGATGCTTGT
* *
2483641 CTTATATAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG
128 CTTATTTAAGGGATGAACTTTCATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG
* * * *
2483706 AAAATCATCAATATTAGTTATCCT-ATGAGGAGAATATGTTAATAGTGCCTAATCTCAAAATGAA
193 AAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAA
* * * *
2483770 TGAAGATCATTACTAGAATCCACGTTTGTCTCATTTGAGGCATGAACTTAGACTTTA-AAAAATT
258 TGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAAGCACGAACTTAGACTTTACAAAAA-A
* * * *
2483834 TGGTGGGAAAAAAGCC-TTCTTGCAAAACAAAAGCATCAATACGATGTATCCTAAAGAGAAGACA
322 TGGTGGGAAAAAAGCCTTTCTTACGAAACGAAAG-ATCAATATGATGTATCCTAAAGAGAAGACA
* * * * * * **
2483898 ATTTTTATGTTGCCTTATCCTGAAAAGAAT-GTGGATTTGTATGAGAATTCATGTTTGTCAAATT
386 ATGTTTATGGTGCCTAATCCAGAAAAGAATGGTGGATTAGTATGAGTATTCATGTTTGTCTTATT
* *
2483962 TAAGAGATAAACTTTGATTATATCA
451 TAAGAGACAAACTTTGATTCTATCA
* * *
2483987 AAAACGTTGGAAGGAAAAGTTTTTCTTACGACACCAAAGCATCAATTTCATGTATCCTAAGGAAG
1 AAAATGGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAAGGAAG
* * * * *
2484052 GGAATGTGTTTTGGGTCTGATTCTCGTAAAGAATGGAGATTGTTATGAGAAACAATGCTTGTCTT
66 GGAATGTGTTTTGGCTCCGATTCTCGTAAAGAATAGAGATTGTTATGAGAATCGATGCTTGTCTT
* *
2484117 ATTTAAGGGATGAACTTTTATTTAAAGGAAGATAGGGCAAAGAAAAGATTTCCATGCAAAAG--A
131 ATTTAAGGGATGAACTTTCATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
* * *
2484180 A--ATC---AT--TTTATCCTAATGAGGAGAATGTGATTATAGTGCCCAATCACAAAATGAATGA
196 ATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGA
** ** * * *
2484238 AGATCATTACTAGAATCCTTGTTTCACTC-TTTTACAGCACGAACCTAGACTTTGCAAAAAATGG
261 AGATCATTACTAGAATCCAAGTTTGTCTCATTTGA-AGCACGAACTTAGACTTTACAAAAAATGG
* *
2484302 TGAGAAAAAAGCCTTTCTTACGAAACGAAAGTATCAATATGATATATCC-AAATGAGAAGACAAT
325 TGGGAAAAAAGCCTTTCTTACGAAACGAAAG-ATCAATATGATGTATCCTAAA-GAGAAGACAAT
* *
2484366 GTTTATGGTGCCTAATCCAAAAAAGAATGG-GGATTAGTTTGAGTATTCATGTTTGTCTTATTTA
388 GTTTATGGTGCCTAATCCAGAAAAGAATGGTGGATTAGTATGAGTATTCATGTTTGTCTTATTTA
2484430 AGAGA-AAACTTTGATTCTATCA
453 AGAGACAAACTTTGATTCTATCA
** * * * *
2484452 AAAATGGTGGAAGGAAAAGTTTACCTTGTGACCCCAAAGCATCGATTTCATGTATCCTAATGAAG
1 AAAATGGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAAGGAAG
** * * * * *
2484517 GGAATGTGTTTTGGCTCTAATTCTCATGAAGAATGGAGATTGTTACGAGAATCAATGCTTGTCTT
66 GGAATGTGTTTTGGCTCCGATTCTCGTAAAGAATAGAGATTGTTATGAGAATCGATGCTTGTCTT
* * * **
2484582 ATTTAAGGGATGAACTTTCATTTAAAAGAAAATAGGTCAAAGAAAATATTTCTTTGCAAAAGAAA
131 ATTTAAGGGATGAACTTTCATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
** *
2484647 AAAATCAATATCATATATCCTAA
196 ATCATCAATATCATTTATCCTAA
2484670 AGTGATGACA
Statistics
Matches: 1397, Mismatches: 207, Indels: 56
0.84 0.12 0.03
Matches are distributed among these distances:
464 11 0.01
465 282 0.20
466 104 0.07
467 3 0.00
469 6 0.00
471 2 0.00
472 306 0.22
473 100 0.07
474 85 0.06
475 208 0.15
476 175 0.13
477 113 0.08
478 2 0.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (475 bp):
AAAATGGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAAGGAAG
GGAATGTGTTTTGGCTCCGATTCTCGTAAAGAATAGAGATTGTTATGAGAATCGATGCTTGTCTT
ATTTAAGGGATGAACTTTCATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
ATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGA
AGATCATTACTAGAATCCAAGTTTGTCTCATTTGAAGCACGAACTTAGACTTTACAAAAAATGGT
GGGAAAAAAGCCTTTCTTACGAAACGAAAGATCAATATGATGTATCCTAAAGAGAAGACAATGTT
TATGGTGCCTAATCCAGAAAAGAATGGTGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGA
GACAAACTTTGATTCTATCA
Found at i:2484112 original size:950 final size:936
Alignment explanation
Indices: 2482565--2484658 Score: 2792
Period size: 950 Copynumber: 2.2 Consensus size: 936
2482555 GTTTTAAAAG
* *
2482565 AAAATGGTGGAAGGAAAAGTTTTTCTTATGACCCCAAAGAATCAATTTCATGTATCCTAATGAAG
1 AAAATGGTGGAAGGAAAAGTTTTTCTTGTGACCCCAAAGCATCAATTTCATGTATCCTAATGAAG
* * * * *
2482630 GGAATGTGTTTTAGCTCCCAATC-TCATAAAGAAAGGAGATTGTTATGAGAATTGATGCTTGTCT
66 GGAATGTGTTTTGGCTCACAATCTTGA-AAAG-AATGAGATTGTTATGAGAATCGATGCTTGTCT
* * * *
2482694 TATTTAAGGGATCAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATGCAAAAGAG
129 TATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAA
* * *
2482759 AATCATCAATATCTTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCAAATCATAAAATGAATG
194 AATCATCAATATCTGTTATCCTAATGAGGAGAATATGTTAATAGTGCCAAATCATAAAATGAATG
*
2482824 AAGATCATTACTAAAATCCAAGTTTGTCTCATTTAAAGCATGGACTTAGACTTTACAAAAAATGG
259 AAGATCATTACTAAAATCCAAGTTTGTCTCATTTAAAGCATGAACTTAGACTTTACAAAAAATGG
* * * *
2482889 TGGGAAAAAAGCCTTTCTTACGAAACGAAATCAATATGATGTATCCTAAAGAGAGAACTATGTTT
324 TGGGAAAAAAGCCTTTCTTACAAAACAAAATCAATACGATGTATCCTAAAGAGAGAACAATGTTT
* * **
2482954 GTGGTGCCTTATCCTGAAAAGAATGGTGGTTAGTATGAGTATCCATGTTTGTCTTATTTAAGAGA
389 ATGGTGCCTTATCCTGAAAAGAATGGTGGTTAGTATGAGAATCCATGTTTGTCAAATTTAAGAGA
* * * * * *
2483019 CAAGCTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACATCAATGTATAAATT
454 CAAACTTTGATTATATCAAAAACGGTGGAAGGAAAAGTTTTTCTTACGACACCAAAGCATAAATT
2483084 TCATGTATCCTAAGGAAAGGAATGTGTTTCGGCTCCGATTCTCGTAAAGAATAGAGATTGTTACG
519 TCATGTATCCTAAGGAAAGGAATGTGTTTCGGCTCCGATTCTCGTAAAGAATAGAGATTGTTACG
* * *
2483149 AGAAGCGATGCTTGTCTTATTTAAGGGATGGACTTTCATTTAAAGGACA-ATAGGGCAAAGAAAA
584 AGAAACAATGCTTGTCTTATTTAAGGGATGAACTTTCATTTAAAGGA-AGATAGGGCAAAGAAAA
* * * * *
2483213 GATTTTCTTGCAAAAGAAAATTGTCAATATCATTTGTCCTAGTGAGGAGAATATGTTTACAGTGA
648 GATTTCCATGCAAAAG-AAA---TC---AT--TTTATCCTAATGAGGAGAATATGATTACAGTGA
* ** * *
2483278 CTAATCACAAAATGAATGAAGATCATTACTAGAATCAAAGTTTGTCTCATTTGA-GGCACAAACT
704 CCAATCACAAAATGAATGAAGATCATTACTAGAATCAAAGTTTCACTC-TTTGACAGCACAAACC
* *
2483342 TAAACTTTACAAAAAATGGTGGGAAAAAAGACTTTCTTACGAAACGAAAGCATCAATATGATGTA
768 TAAACTTTACAAAAAATGGTGAGAAAAAAGACTTTCTTACGAAACGAAAGCATCAATATGATATA
** * * * *
2483407 TCTTATTTAGAAGACAATGTTTATGGTGCCGAATCCAGAGAAGAATGGAGATTACTATGAGTATT
833 TCCAAATGAGAAGACAATGTTTATGGTGCCGAATCCAAAAAAGAATGGAGATTACTATGAGTATT
*
2483472 CATGCTTGTTTTATTTAAAAGACAAACTTTGATTCTATAAA
898 CATGCTTGTCTTATTTAAAAGA-AAACTTTGATTCTAT-AA
* * ** * *
2483513 AAAATGATGGAAGGAAAAGTTTTTCTTGCGACAGCAAAGCGTCAATTTCATGTATCCTAAGGAAG
1 AAAATGGTGGAAGGAAAAGTTTTTCTTGTGACCCCAAAGCATCAATTTCATGTATCCTAATGAAG
* ** *
2483578 GAAATGTGTTTTGGCTTCACAATCTTGAAAAGAACTGAGACAGTTATGAGAATCGATGCCTGTCT
66 GGAATGTGTTTTGGC-TCACAATCTTGAAAAGAA-TGAGATTGTTATGAGAATCGATGCTTGTCT
*
2483643 TATATAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAA
129 TATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAA
*
2483708 AATCATCAATAT-TAGTTATCCT-ATGAGGAGAATATGTTAATAGTGCCTAATC-TCAAAATGAA
194 AATCATCAATATCT-GTTATCCTAATGAGGAGAATATGTTAATAGTGCCAAATCAT-AAAATGAA
* * * * *
2483770 TGAAGATCATTACTAGAATCCACGTTTGTCTCATTTGAGGCATGAACTTAGACTTTA-AAAAATT
257 TGAAGATCATTACTAAAATCCAAGTTTGTCTCATTTAAAGCATGAACTTAGACTTTACAAAAA-A
*
2483834 TGGTGGGAAAAAAGCC-TTCTTGCAAAACAAAAGCATCAATACGATGTATCCTAAAGAGA-AGAC
321 TGGTGGGAAAAAAGCCTTTCTTACAAAAC-AAA--ATCAATACGATGTATCCTAAAGAGAGA-AC
* * * *
2483897 AATTTTTATGTTGCCTTATCCTGAAAAGAAT-GTGGATTTGTATGAGAATTCATGTTTGTCAAAT
382 AATGTTTATGGTGCCTTATCCTGAAAAGAATGGTGG-TTAGTATGAGAATCCATGTTTGTCAAAT
* *
2483961 TTAAGAGATAAACTTTGATTATATCAAAAACGTTGGAAGGAAAAGTTTTTCTTACGACACCAAAG
446 TTAAGAGACAAACTTTGATTATATCAAAAACGGTGGAAGGAAAAGTTTTTCTTACGACACCAAAG
* * * * * *
2484026 CATCAATTTCATGTATCCTAAGGAAGGGAATGTGTTTTGGGTCTGATTCTCGTAAAGAATGGAGA
511 CATAAATTTCATGTATCCTAAGGAAAGGAATGTGTTTCGGCTCCGATTCTCGTAAAGAATAGAGA
* *
2484091 TTGTTATGAGAAACAATGCTTGTCTTATTTAAGGGATGAACTTTTATTTAAAGGAAGATAGGGCA
576 TTGTTACGAGAAACAATGCTTGTCTTATTTAAGGGATGAACTTTCATTTAAAGGAAGATAGGGCA
* * *
2484156 AAGAAAAGATTTCCATGCAAAAGAAATCATTTTATCCTAATGAGGAGAATGTGATTATAGTGCCC
641 AAGAAAAGATTTCCATGCAAAAGAAATCATTTTATCCTAATGAGGAGAATATGATTACAGTGACC
*** * * *
2484221 AATCACAAAATGAATGAAGATCATTACTAGAATCCTTGTTTCACTCTTTTACAGCACGAACCTAG
706 AATCACAAAATGAATGAAGATCATTACTAGAATCAAAGTTTCACTCTTTGACAGCACAAACCTAA
* * *
2484286 ACTTTGCAAAAAATGGTGAGAAAAAAGCCTTTCTTACGAAACGAAAGTATCAATATGATATATCC
771 ACTTTACAAAAAATGGTGAGAAAAAAGACTTTCTTACGAAACGAAAGCATCAATATGATATATCC
* * * *
2484351 AAATGAGAAGACAATGTTTATGGTGCCTAATCCAAAAAAGAATGGGGATTAGTTTGAGTATTCAT
836 AAATGAGAAGACAATGTTTATGGTGCCGAATCCAAAAAAGAATGGAGATTACTATGAGTATTCAT
* * *
2484416 GTTTGTCTTATTTAAGAGAAAACTTTGATTCTATCA
901 GCTTGTCTTATTTAAAAGAAAACTTTGATTCTATAA
** *
2484452 AAAATGGTGGAAGGAAAAGTTTACCTTGTGACCCCAAAGCATCGATTTCATGTATCCTAATGAAG
1 AAAATGGTGGAAGGAAAAGTTTTTCTTGTGACCCCAAAGCATCAATTTCATGTATCCTAATGAAG
* * *
2484517 GGAATGTGTTTTGGCTCTA-ATTCTCATG--AAGAATGGAGATTGTTACGAGAATCAATGCTTGT
66 GGAATGTGTTTTGGCTC-ACAATCT--TGAAAAGAAT-GAGATTGTTATGAGAATCGATGCTTGT
* * * * **
2484579 CTTATTTAAGGGATGAACTTTCATTTAAAAGAAAATAGGTCAAAGAAAATATTTCTTTGCAAAAG
127 CTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG
**
2484644 AAAAAAATCAATATC
192 AAAATCATCAATATC
2484659 ATATATCCTA
Statistics
Matches: 1001, Mismatches: 127, Indels: 45
0.85 0.11 0.04
Matches are distributed among these distances:
937 1 0.00
938 103 0.10
939 72 0.07
940 21 0.02
941 209 0.21
943 2 0.00
946 2 0.00
947 16 0.02
948 178 0.18
949 124 0.12
950 273 0.27
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (936 bp):
AAAATGGTGGAAGGAAAAGTTTTTCTTGTGACCCCAAAGCATCAATTTCATGTATCCTAATGAAG
GGAATGTGTTTTGGCTCACAATCTTGAAAAGAATGAGATTGTTATGAGAATCGATGCTTGTCTTA
TTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
TCATCAATATCTGTTATCCTAATGAGGAGAATATGTTAATAGTGCCAAATCATAAAATGAATGAA
GATCATTACTAAAATCCAAGTTTGTCTCATTTAAAGCATGAACTTAGACTTTACAAAAAATGGTG
GGAAAAAAGCCTTTCTTACAAAACAAAATCAATACGATGTATCCTAAAGAGAGAACAATGTTTAT
GGTGCCTTATCCTGAAAAGAATGGTGGTTAGTATGAGAATCCATGTTTGTCAAATTTAAGAGACA
AACTTTGATTATATCAAAAACGGTGGAAGGAAAAGTTTTTCTTACGACACCAAAGCATAAATTTC
ATGTATCCTAAGGAAAGGAATGTGTTTCGGCTCCGATTCTCGTAAAGAATAGAGATTGTTACGAG
AAACAATGCTTGTCTTATTTAAGGGATGAACTTTCATTTAAAGGAAGATAGGGCAAAGAAAAGAT
TTCCATGCAAAAGAAATCATTTTATCCTAATGAGGAGAATATGATTACAGTGACCAATCACAAAA
TGAATGAAGATCATTACTAGAATCAAAGTTTCACTCTTTGACAGCACAAACCTAAACTTTACAAA
AAATGGTGAGAAAAAAGACTTTCTTACGAAACGAAAGCATCAATATGATATATCCAAATGAGAAG
ACAATGTTTATGGTGCCGAATCCAAAAAAGAATGGAGATTACTATGAGTATTCATGCTTGTCTTA
TTTAAAAGAAAACTTTGATTCTATAA
Found at i:2489667 original size:30 final size:30
Alignment explanation
Indices: 2489633--2489742 Score: 168
Period size: 30 Copynumber: 3.7 Consensus size: 30
2489623 TTCTCTCCTC
* *
2489633 CTCCTGTCATC-CCTCCTCTCTCTATTATCT
1 CTCCTGTC-TCTCCTCCTATCTCTACTATCT
2489663 CTCCTGTCTCTCCTCCTATCTCTACTATCT
1 CTCCTGTCTCTCCTCCTATCTCTACTATCT
*
2489693 CTCCTATCTCTCCTCCTATCTCTACTATCT
1 CTCCTGTCTCTCCTCCTATCTCTACTATCT
*
2489723 CTCATGTCTCTCCTCCTATC
1 CTCCTGTCTCTCCTCCTATC
2489743 ATCCCTCCTC
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
29 2 0.03
30 72 0.97
ACGTcount: A:0.11, C:0.44, G:0.03, T:0.43
Consensus pattern (30 bp):
CTCCTGTCTCTCCTCCTATCTCTACTATCT
Found at i:2489684 original size:21 final size:20
Alignment explanation
Indices: 2489658--2489742 Score: 75
Period size: 21 Copynumber: 4.2 Consensus size: 20
2489648 CTCTCTCTAT
2489658 TATCTCTCCTGTCTCTCCTCC
1 TATCTCTCCT-TCTCTCCTCC
* *
2489679 TATCTCTAC-TATCT-CTCC
1 TATCTCTCCTTCTCTCCTCC
* * *
2489697 TATCTCTCCTCCTATCTCTAC
1 TATCTCTCCTTCTCTC-CTCC
*
2489718 TATCTCTCATGTCTCTCCTCC
1 TATCTCTCCT-TCTCTCCTCC
2489739 TATC
1 TATC
2489743 ATCCCTCCTC
Statistics
Matches: 49, Mismatches: 11, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
18 12 0.24
19 6 0.12
21 27 0.55
22 4 0.08
ACGTcount: A:0.12, C:0.42, G:0.02, T:0.44
Consensus pattern (20 bp):
TATCTCTCCTTCTCTCCTCC
Found at i:2490542 original size:15 final size:15
Alignment explanation
Indices: 2490503--2490542 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
2490493 CAAATACTGG
*
2490503 TTTTTTTTTCCTCTC
1 TTTTTTTTTTCTCTC
* *
2490518 TTTTTGTTTTCTTTC
1 TTTTTTTTTTCTCTC
2490533 TTTTTTTTTT
1 TTTTTTTTTT
2490543 GTATTCTTGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.00, C:0.15, G:0.03, T:0.82
Consensus pattern (15 bp):
TTTTTTTTTTCTCTC
Found at i:2491138 original size:240 final size:240
Alignment explanation
Indices: 2490715--2491177 Score: 872
Period size: 240 Copynumber: 1.9 Consensus size: 240
2490705 AGGTTGCCTA
2490715 AATAATGATCTTGAGATGGATTTCTAACAATAAACAGAATTATTGATGCAAGAACAGAAATTGAA
1 AATAATGATCTTGAGATGGATTTCTAACAATAAACAGAATTATTGATGCAAGAACAGAAATTGAA
*
2490780 AGAAGTAGAAAAAAATAACAAAATGGAATAGATTAGAGATGAATGATGGCACCACAATCACAAGA
66 AGAAGCAGAAAAAAATAACAAAATGGAATAGATTAGAGATGAATGATGGCACCACAATCACAAGA
* *
2490845 TTGATAAGCCAAAAGGAATGATTGCCACAAAAGTCTTGGCCTCTTGATAAGATCTAGAAAAATTG
131 TTGATAAGCCAAAAGGAATGATCGCCACAAAAGTCTTGGCCTCTTGATAAGATCCAGAAAAATTG
2490910 GCTCACTCAAGAACCTAAGAATCACTCTTGGCCATGGTTGTCATC
196 GCTCACTCAAGAACCTAAGAATCACTCTTGGCCATGGTTGTCATC
2490955 AATAATGATCTTGAGATGGATTTCTAACAATAAACAGAATTATTGATGCAAGAACAGAAATTGAA
1 AATAATGATCTTGAGATGGATTTCTAACAATAAACAGAATTATTGATGCAAGAACAGAAATTGAA
*
2491020 AGAAGCAGAAAAAAATAACAAAATGGAATAGATTAGAGATGAATGATGGCGCCACAATCACAAGA
66 AGAAGCAGAAAAAAATAACAAAATGGAATAGATTAGAGATGAATGATGGCACCACAATCACAAGA
**
2491085 TTGATAAGCCAAAAGGAATGATCGCCACAAGTGTCTTGGCCTCTTGATAAGATCCAGAAAAATTG
131 TTGATAAGCCAAAAGGAATGATCGCCACAAAAGTCTTGGCCTCTTGATAAGATCCAGAAAAATTG
2491150 GCTCACTCAAGAACCTAAGAATCACTCT
196 GCTCACTCAAGAACCTAAGAATCACTCT
2491178 CACACAAAAA
Statistics
Matches: 217, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
240 217 1.00
ACGTcount: A:0.43, C:0.15, G:0.19, T:0.23
Consensus pattern (240 bp):
AATAATGATCTTGAGATGGATTTCTAACAATAAACAGAATTATTGATGCAAGAACAGAAATTGAA
AGAAGCAGAAAAAAATAACAAAATGGAATAGATTAGAGATGAATGATGGCACCACAATCACAAGA
TTGATAAGCCAAAAGGAATGATCGCCACAAAAGTCTTGGCCTCTTGATAAGATCCAGAAAAATTG
GCTCACTCAAGAACCTAAGAATCACTCTTGGCCATGGTTGTCATC
Found at i:2492222 original size:158 final size:157
Alignment explanation
Indices: 2492013--2492677 Score: 399
Period size: 158 Copynumber: 4.2 Consensus size: 157
2492003 TTCATGCAAA
* * * ** *
2492013 AAAAACATTAATATCATTTATCCTAATGAGGGGAATATGTTTGTAGTGCCTAATCACAAAATGAA
1 AAAAGCATCAATATCATGTATCCTAATGAGAAGAATATGTTTATAGTGCCTAATCACAAAATGAA
* * * *
2492078 TGAAGATCACTACTAGAATCCAAGTTTATCTAATTTAAGGCACGAACTTAGATTTTACAAGAAAT
66 TGAAGATCATTACTAGAATCCATGTTTATCTTATTTAAGGCACAAACTTAGATTTTACAAGAAAT
*
2492143 ATGGAGAAAAAAGCCTTTCTTGCGAAAC
131 AGGGA-AAAAAAGCCTTTCTTGCGAAAC
* * *
2492171 AAAAGCATCAATATGATGTATCCTAATGAGAAG-ATAATGTTTATGGTGCCTAATC-CGAAAAAG
1 AAAAGCATCAATATCATGTATCCTAATGAGAAGAAT-ATGTTTATAGTGCCTAATCAC-AAAATG
* ** * * * * * * * * * *
2492234 ACTGGGGATTAGTA-TGAGTATTCATGTTTGTCTTATTTAACAG-ACAAACTTTGATTCTATAAA
64 AATGAAGATCATTACT-AGAATCCATGTTTATCTTATTTAA-GGCACAAACTTAGATTTTACAAG
* * ** *
2492297 AAATGATGGAAGGAAAAGTTTTTCTTGCGACAC
127 AAAT-AGGGAA-AAAAAGCCTTTCTTGCGAAAC
* * * * * * * * * * *
2492330 CAAAGCTTCAATTTCATGTAT--TTA-G-GAAGGGA-ATGTTTTTTG-GCTTTGATTCTCCTAAA
1 AAAAGCATCAATATCATGTATCCTAATGAGAA-GAATATGTTTATAGTGC-CT-AATC-ACAAAA
* * ** * * ** * * * *
2492389 -GAGTGGAGATTGTTACGAGAATCGATGCCTATCTTATTTAAGGGATAAACTTTGA-TTTAAAAG
62 TGAATGAAGATCATTACTAGAATCCATGTTTATCTTATTTAAGGCACAAACTTAGATTTTACAAG
** * * *
2492452 AAAATAGGGCAAAGAAAAGATTTTCATGCAAAAG
127 -AAATAGGG-AAA-AAAAGCCTTTCTTGCGAAAC
* * * *
2492486 AAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTACAGTGCCTAATCACAAAATGAA
1 AAAAGCATCAATATCATGTATCCTAATGAGAAGAATATGTTTATAGTGCCTAATCACAAAATGAA
* * * **
2492551 GGAAGATCATTACTAGAATCCATGTTTGTCTCT-TTTGAA-GCACGAACTTAGGCTTTACAA-AA
66 TGAAGATCATTACTAGAATCCATGTTTATCT-TATTT-AAGGCACAAACTTAGATTTTACAAGAA
2492613 A-AGGGTGAGAAAAAAGCCTTTCTTGCGAAAC
129 ATA-GG-GA-AAAAAAGCCTTTCTTGCGAAAC
* * *
2492644 GAAAGCATCAATATGATGTATCGTAATGAGAAGA
1 AAAAGCATCAATATCATGTATCCTAATGAGAAGA
2492678 TATTTATGAG
Statistics
Matches: 373, Mismatches: 104, Indels: 60
0.69 0.19 0.11
Matches are distributed among these distances:
154 2 0.01
155 21 0.06
156 81 0.22
157 11 0.03
158 153 0.41
159 84 0.23
160 19 0.05
161 2 0.01
ACGTcount: A:0.38, C:0.13, G:0.19, T:0.30
Consensus pattern (157 bp):
AAAAGCATCAATATCATGTATCCTAATGAGAAGAATATGTTTATAGTGCCTAATCACAAAATGAA
TGAAGATCATTACTAGAATCCATGTTTATCTTATTTAAGGCACAAACTTAGATTTTACAAGAAAT
AGGGAAAAAAAGCCTTTCTTGCGAAAC
Found at i:2495428 original size:475 final size:474
Alignment explanation
Indices: 2492917--2501382 Score: 8108
Period size: 475 Copynumber: 17.6 Consensus size: 474
2492907 TATCATTTGT
* *
2492917 CCTAATCCGAAAAAGAATGGGGATTAGTATGAATATTCATGTTTGTTTTATTTAAGAGACAAACT
1 CCTAATCCGAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACT
* * *
2492982 TTGATTCTATCAAAAACGGTGGAAGGAAAAGTGTTTCTTGTGACGTCAAAGCATCAATGTCATGT
66 TTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACATCAAAGCATCAATGTCATGT
* *
2493047 ATCCTACCTAATGAAGGGAATGTGTTTTGGCTTCATAATCTTGAAAAGAACTAAGATAGTTACGA
131 A---T-CCTAATGAAGGGAATGTGTTTTGGCTTCATAATCTTGAAAAGAACTGAGACAGTTACGA
* * * * *
2493112 GAATCAATTCCTATCTTATTTAAGTTGTGAACATCGTTTTAAAGGAAAATAGGCAAAGAAAAGAT
192 GAATCGATTCTTGTCTTATTTAAGGTATGAACATCGTTTTAAAGGAAAATAGGCAAAGAAAAGAT
* * * *
2493177 TTTCATGCAAAAGAAAATCATCAATATCATTTCTCCTAGTGAGGCGAATATGTTTATAGTGCCTA
257 TTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTA
* * **
2493242 ATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTCTGTCTCATTTGAGACGCGAACTTAGA
322 ATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCATGAACTTAGA
* ** ** * * * *
2493307 CTTTACAAAAAATGGTGGGAAAATTGTGTATCTTGCAAAACGAAAGCATCAAT-T-TTATATCCT
387 CTTTAC-AAAAATGATGGGAAAAAAGCCTTTCTTGCGAAACGAAAGCATCAATATGATGTATCCT
2493370 ACA-GAGAAGA-ATATGTTTATGGTG
451 A-ATGAGAAGACA-ATGTTTATGGTG
* * * * * * * *
2493394 CCTTATCCTAAAAACAATGGGGATTACTATGAGTATTTATGTTTATTTTATTTAAGAGAAAAACT
1 CCTAATCCGAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACT
* * * * *
2493459 TTGATTCTATCGAAAACGGTGGAAAGAAAAGTTTTTCTTGGGACACCAAAGCATCAATTTCATGT
66 TTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACATCAAAGCATCAATGTCATGT
* * * * *
2493524 ATCCTAATAAAGGGAACGTGTTTTGGCTTCACAATCTTGAAAAGATCTGAGACAATTACGAGAAT
131 ATCCTAATGAAGGGAATGTGTTTTGGCTTCATAATCTTGAAAAGAACTGAGACAGTTACGAGAAT
* * * * * * * * *
2493589 CGATACTTGTCTTTTTTAAGGGATGGACTTTGATTTAAAGGCAAATAAGGCAAAGAAAAGATTTT
196 CGATTCTTGTCTTATTTAAGGTATGAACATCGTTTTAAAGGAAAAT-AGGCAAAGAAAAGATTTC
* * * * * *
2493654 CATGCAAAAAAAAAACATTAATATCATTAATCCTAATGAGGGGAATATGTTTGTAGTGCCTAATC
260 CATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATC
* * * * **
2493719 ACAAAATGAATGAAGATCACTACTAGAATCCAAGTTTATCTAATTTAAGGCACAAACTTAGACTT
325 ACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCATGAACTTAGACTT
* *
2493784 TACAAAAAAATG-GGGAGAAAAAAGCCTTTCTTGCGAAACAAAAGCATCAATATGATGTATCCTA
390 TAC--AAAAATGATGG-GAAAAAAGCCTTTCTTGCGAAACGAAAGCATCAATATGATGTATCCTA
2493848 ATGAGAAGACAATGTTTATGGTG
452 ATGAGAAGACAATGTTTATGGTG
*
2493871 CCTAATCC-AGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAACAGACAAAC
1 CCTAATCCGA-AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAAC
* * * * * * * * *
2493935 TTTGATTCTATAAAAAATGATAGAAGGAAAAGTTTTTCTTGCAACACCAAAGCTTCAATTTCGTG
65 TTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACATCAAAGCATCAATGTCATG
* * * *** * **
2494000 TATCCTAAGGAAGGGAATGTTTTTTGGCTCCGAT--TCTCCTAAAGAATTGAGATTGTTACGAGA
130 TATCCTAATGAAGGGAATGTGTTTTGGCTTC-ATAATCTTGAAAAGAACTGAGACAGTTACGAGA
* * * * * * * *
2494063 ATCGATGCCTATCTTATTTAAGGGATAAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATT
194 ATCGATTCTTGTCTTATTTAAGGTATGAACATCGTTTTAAAGGAAAATA-GGCAAAGAAAAGATT
* *
2494128 TTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCTTAA
258 TCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAA
* * * * * *
2494193 TCACAAAATGAAGGAAGATTATTACTAGAATCCATGTTTGTCTCTTTTGAAGCATGAACTTAGGC
323 TCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCATGAACTTAGAC
* * * *
2494258 TTTACAAAAAAGGGTGGGAAAAAAGCCTTTCTTGTGAAACAAAAGCATCAA-ATGATGTA-CCGT
388 TTTAC-AAAAATGATGGGAAAAAAGCCTTTCTTGCGAAACGAAAGCATCAATATGATGTATCC-T
2494321 AATGAGAAGACAATGTTTATGGTG
451 AATGAGAAGACAATGTTTATGGTG
* * *
2494345 CCTAATCTGGAAAAGAATGGGGATTAGTATGAGTATTCATATTTGTCTTATTTAAGAGACAAACT
1 CCTAATCCGAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACT
* *
2494410 TTGATTCAATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCAACATCAAAGCATCAATGTCATGT
66 TTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACATCAAAGCATCAATGTCATGT
* * * * * *
2494475 ATCCTAATGAAGGGAATTTATTTTGGCTTCACAATCTTGAAAAGAACTAAGATACTTACGAGAAT
131 ATCCTAATGAAGGGAATGTGTTTTGGCTTCATAATCTTGAAAAGAACTGAGACAGTTACGAGAAT
* * *
2494540 CAATTCTTGTCTTATTTAAGGTGTGAACATCGTTTTAAAGGAAAATAGGCAAAGAAAAGATTCCC
196 CGATTCTTGTCTTATTTAAGGTATGAACATCGTTTTAAAGGAAAATAGGCAAAGAAAAGATTTCC
* * *** *
2494605 CTGCAAAAGAAAATCATTAATATCATTTATCCTAATGAGGAGAATGCATTTACAGTGCCTAATCA
261 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCA
* * * * * * * *
2494670 CAAAATGAAGGAAGATCATTGCTGGAATTCATGCTTGTCTCTTTTGAAGCATGAACTTAGACTTT
326 CAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCATGAACTTAGACTTT
*
2494735 ACAAAAA--ATGGTG--AAAAGCCTTTCTTGC-AAAGCGAAAGCATCAAGATGATGTATCCTAAT
391 ACAAAAATGATGG-GAAAAAAGCCTTTCTTGCGAAA-CGAAAGCATCAATATGATGTATCCTAAT
* *
2494795 GAGAAGACAACGTTTATAGTG
454 GAGAAGACAATGTTTATGGTG
* * * * *
2494816 CCTAATCCAAAAAAGAATTGGTATTAGTATGAGTATTCATGTTTGTCTTATTTAAAAGGCAAACT
1 CCTAATCCGAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACT
*
2494881 TTGATTCTATCAAAAACGGTGAAAGGAAAAGTTTTTCTTGCGACATCAAAGCATCAATGTCATGT
66 TTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACATCAAAGCATCAATGTCATGT
* * * *
2494946 ATCCTAATGAAGAGAATGTGTTTTGGCTTCATAATCTTGAAAAGAACTGAGACAATTATGAGGAT
131 ATCCTAATGAAGGGAATGTGTTTTGGCTTCATAATCTTGAAAAGAACTGAGACAGTTACGAGAAT
* * **
2495011 CGATTCTTGTCTTATCTAAGGTATGAACATCGTTTTAAAGGAAAATAGGCAAGGAATGGA-TTCC
196 CGATTCTTGTCTTATTTAAGGTATGAACATCGTTTTAAAGGAAAATAGGCAAAGAAAAGATTTCC
* *
2495075 AATGCAAAAGAAAATCATCAATATCATTTATGCTAATGAGGAGAATGTGTTTATAGTGCCTAATC
261 -ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATC
* * * *
2495140 ACAAAATGAATGAAGGTCATTACTAGAAACCACGTTTGTCTCATTTGAGGCATGAACCTAGACTT
325 ACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCATGAACTTAGACTT
** * ** *
2495205 TAACAAATTTGATGGGAAAAAAGCCTTTCTTGCGAAATGAAAGCATCAATACAAGGTATCCTAAT
390 T-ACAAAAATGATGGGAAAAAAGCCTTTCTTGCGAAACGAAAGCATCAATATGATGTATCCTAAT
*
2495270 GAGAAGAAAATGTTTATGGTG
454 GAGAAGACAATGTTTATGGTG
* * * *
2495291 CCTAATCCGAAAAAGAATGGGGATTAGTAAGAGAATTCATGCTTGTTTTATTTAAGAGACAAACT
1 CCTAATCCGAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACT
* * * *
2495356 TTGATTCTATCAAAAATGGTGGAAGGAAAAGTGTTTCTTGTGACGTCAAAGCATCAATGTCATGT
66 TTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACATCAAAGCATCAATGTCATGT
* *
2495421 ATCCTAATGAAGGGAATGTGTTTTGGCTTCATAATCTTGAAAAGAACTGAGCCAGTTATGAGAAT
131 ATCCTAATGAAGGGAATGTGTTTTGGCTTCATAATCTTGAAAAGAACTGAGACAGTTACGAGAAT
* *
2495486 CGATTCTTGTCTTATTTAAGATATGAACATCGTTTTAAAGGAAAATAGGCAAAGAGAAGA-TTCC
196 CGATTCTTGTCTTATTTAAGGTATGAACATCGTTTTAAAGGAAAATAGGCAAAGAAAAGATTTCC
* ** * * * *
2495550 AATGCAAAAAAAAATCATCAATATCATTTAAGGGATTATTACGAGAAGTAATGCTTGTTTTATTT
261 -ATGCAAAAGAAAATCATCAATATCATTT-----ATCCTAATGAGGAG-AAT--ATG-TTTA--T
* ** * * *** ** * * * *** * *** *
2495615 AGGGGATGAGCTTTGATTTTAAGGAAAAT-AGGGCAAAGAA---AA-TATT-TC-CATGCAAAAG
314 AGTGCCTAATC-ACAAAATGAATGAAGATCATTAC-TAGAATCCAAGT-TTGTCTCAT-TTGAGG
* ** * ** * * *
2495673 -A-AAATCATTA-ATTTCTTTTATC-CTAATGAGGGGAATGTGTTTATAGTGCCTAATC--ACAA
375 CATGAA-C-TTAGA---C-TTTA-CAAAAATGATGGGAA-------A-AAAGCCT-TTCTTGCGA
* * * * * * ** * *
2495732 AAAGAAAGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTATC
424 AACGAAAG--CATCAATA-T-G-AT----GTAT-CCTAATGAGAAG-AC-AA--T-G--TTTATG
***
2495797 AAA
472 GTG
** ** ** ** *** ** * * * * **
2495800 AATGGTTGGAAAAAAGCCT--TTCTTGCAAAATGAAAGCA-TCA-ATATGAT-GTATCCAAAGGA
1 CCTAATCCG-AAAAAGAATGGGGATT--AGTATG--AGTATTCATGTTTG-TCTTAT-TTAA-GA
* * *
2495860 GA-AAACTATGATTATAGTACCTTATCTTGAAAGAACGG-GGATTAGTATAAGTATTCATGT-TT
58 GACAAACT-T--TGAT--T--C-TATC---AAA-AACGGTGGA--AGGAAAAGT-TT--T-TCTT
* * * * * * ** * * *
2495922 GTCTTA-TTTAAGAG-A-CAAACTTTGATTCTATCAAAAACGATGGAAGGAAAAGTTTTTCTTGC
105 G-C-GACATCAA-AGCATC-AA-TGTCA-TGTATC--CTA--AT-GAAGGGAATG-TGTT-TTG-
** * * * **** ** * * * * * *
2495984 GACACCA-AAGCATCAATTTCA-TGTATCCTAAG-GAAGGGAAT-GTTTTTTGGCTCCGATTCTC
156 G-CTTCATAATCTTGAAAAGAACTG-AGAC--AGTTACGAGAATCGATTCTT-G-T-C--TTAT-
* * * * * * *
2496045 CTAAAGAATGGAGAT--TGTT-ACGAGAATCAAT-GCCTGTCTTATTTAAGGGATAAACTTTGAT
211 TTAAGGTATGAACATCGTTTTAAAG-GAA--AATAG---G-C--A---AA--GA-AAA----GAT
** *
2496106 TTAAAGGAAAATAAGGC-AAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATTAT--TTAT
257 TT-----CCA-T---GCAAAAG-AAA-A--T-CAT-C-------AAT-ATC-AT-TTATCCTAAT
* * * * * *
2496168 CCTAATGAGGAGAATATGTTTACAGTGCCTAATCGCAAAGTGAAGGAAGATCATTACTAGAATCC
297 --GAG----GAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
** * * * * * * *
2496233 GTGTTTGTCTCTTTTGAAGCACGAACTTAGGCTTTACAAAAAAGGGTGAGAAAAAAGCCTTTCTT
356 AAGTTTGTCTCATTTGAGGCATGAACTTAGACTTTAC-AAAAATGATGGGAAAAAAGCCTTTCTT
* * * *
2496298 GCGAATCGAAAGCATCATTATGATGTATCGTAATAAGAAGACAATGTTTATGGTG
420 GCGAAACGAAAGCATCAATATGATGTATCCTAATGAGAAGACAATGTTTATGGTG
* * * *
2496353 CCTAATGCGGAAAAGAATGGGGATTAGTATGAGTATTCATATTTGTCTTATTTAAGAGTCAAACT
1 CCTAATCCGAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACT
*
2496418 TTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCAACATCAAAGCATCAATGTCATGT
66 TTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACATCAAAGCATCAATGTCATGT
* * * * * *
2496483 ATCCTAATGAAGGGAATTTGTTTTGACTTCACAATCTTGAAAAAAACTAAGATAGTTACGAGAAT
131 ATCCTAATGAAGGGAATGTGTTTTGGCTTCATAATCTTGAAAAGAACTGAGACAGTTACGAGAAT
* * * * * * * *
2496548 CAAGTCTTGTCTTATTTAAGGTGTGAACATTGTTTTAAATGAGAACAGGCAAAGAAAA-AGTTCC
196 CGATTCTTGTCTTATTTAAGGTATGAACATCGTTTTAAAGGAAAATAGGCAAAGAAAAGA-TTTC
* * **
2496612 CATGTAAAAGAAAATCATCAATATCATTTATCCTAGTGA-GACGAATATGTTTATAGCACCTAAT
260 CATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGA-GAATATGTTTATAGTGCCTAAT
* * ** * *
2496676 CACAAAATGAATGAAGATCGTTACTAGAATTCAAGTCCGTCTCATTTGAGACACGAACTTAGACT
324 CACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCATGAACTTAGACT
* * * * * * ** *
2496741 TTACAAAAAAT-AGGGGGAAAAATGCGTATCTTGCAAAACGAAAGCATCATTATTTTATATCCT-
389 TTAC-AAAAATGA-TGGGAAAAAAGCCTTTCTTGCGAAACGAAAGCATCAATATGATGTATCCTA
2496804 ATAGAGAAGA-ATATGTTTATGGTG
452 AT-GAGAAGACA-ATGTTTATGGTG
* * * * *
2496828 CCTTATCCTG-AAAAGAATGGGGATTAGTATGTGTATTTATGTTTATCTTATTTAAGAGAAAAAC
1 CCTAATCC-GAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAAC
* * * * * *
2496892 TTTGATTCTATCGAAAACAGTGGAAAGAAAAGTTCTTCTTGCGACACCAAAGCATCAATTTCATG
65 TTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACATCAAAGCATCAATGTCATG
* * * *
2496957 TATCCTAATAAAGGGAATGTGTTTTGGCTTCACAATCTTGAAAAGATCTGAGACAATTACGAGAA
130 TATCCTAATGAAGGGAATGTGTTTTGGCTTCATAATCTTGAAAAGAACTGAGACAGTTACGAGAA
* * * * * * *
2497022 TCGATGCTTGTCTT-TTTAAAGGGATGAACTTTGATTTAAAGGCAAATAAGGCAAAGAAAAAATT
195 TCGATTCTTGTCTTATTT-AAGGTATGAACATCGTTTTAAAGGAAAAT-AGGCAAAGAAAAGATT
* * * * * * *
2497086 TTCATGCAAAAAAAAACCATTAATATCATTTATCCTAATGCGGGGAATATGTTTGTAGTGCCTAA
258 TCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAA
* * * * * *
2497151 TCACAAAATGAATGAATATCACTACTAGAATCCAAGTTTATCTAATTTAAGGCACGAA-TTAGAC
323 TCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCATGAACTTAGAC
* * * * *
2497215 TTTACAAAAAATG-GGGAGAAAAAAG-CTTTCTTGTGAAACAAAAGCATCAATACGATGTATCCG
388 TTTAC-AAAAATGATGG-GAAAAAAGCCTTTCTTGCGAAACGAAAGCATCAATATGATGTATCCT
* * * * * *
2497278 AAAGAGAAAACTATGATTATAGTA
451 AATGAGAAGACAATGTTTATGGTG
* * *
2497302 CCTTATCTTG-AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTGAGAGACAAAC
1 CCTAATC-CGAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAAC
* * * *
2497366 TTTGATTCTATCAAAAACGATGGAAGGAAAAGTTTTTCTTGCAACACCAAAGCATCAATTTCATG
65 TTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACATCAAAGCATCAATGTCATG
* * * * *** **
2497431 TATGCTAAGGAAGGGAATGTTTTTTGGC-TC-TGATTCTCCTAAAGAA-TGGAGATTGTTACGAG
130 TATCCTAATGAAGGGAATGTGTTTTGGCTTCAT-AATCTTGAAAAGAACT-GAGACAGTTACGAG
* * * * * * *
2497493 AATCGATGCTTGTCTTATTTAGGGGATAAACTTTGATTTAAAGGAAAATAGGCCAAAGAAAAGAT
193 AATCGATTCTTGTCTTATTTAAGGTATGAACATCGTTTTAAAGGAAAATAGG-CAAAGAAAAGAT
* *
2497558 TTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTACAGTGTCTA
257 TTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTA
* * * * * *
2497623 ATCACAAAATGAAGGAAGATCATTACTAGAATCCATGTTTGTCTCTTTTGAAGCACGAACTTAGG
322 ATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCATGAACTTAGA
* * * * * **
2497688 CTTTACAAAAAGGGGTGAGAAAAAAGCATTTCTTGTGAAACGAAAGCATCAATATGATGTATTGT
387 CTTTACAAAAA-TGATGGGAAAAAAGCCTTTCTTGCGAAACGAAAGCATCAATATGATGTATCCT
2497753 AATGAGAAGACAATGTTTATGGTG
451 AATGAGAAGACAATGTTTATGGTG
* * * * *
2497777 CCTAAT-CTAGAAAAGAGTGGGGATTAGTATGAGTATTCATGTTTCTCTTATTTATGAGAC--AG
1 CCTAATCCGA-AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAAC
* * *
2497839 TTTGATTTTATCAAAAACGGTGGAAGGAAAAGTATTTCTTGCGACCA-CAAAGCATCAATTTCAT
65 TTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGA-CATCAAAGCATCAATGTCAT
* * * ** * **
2497903 GTATCCTATTGAGGGGAATGTG-TTTGTC-TCCCAATC-TCATAAAGAA-TGGAGATTGTTACGA
129 GTATCCTAATGAAGGGAATGTGTTTTGGCTTCATAATCTTGA-AAAGAACT-GAGACAGTTACGA
* * * ** * * * * * *
2497964 GAATCAATGCCTACCTTATTTATGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAAAAAAGA
192 GAATCGATTCTTGTCTTATTTAAGGTATGAACATCGTTTTAAAGGAAAATA-GGCAAAGAAAAGA
* * * ** * *
2498029 TTTCCATGCAAAAGAAAACCGTCAATATTATTTATCCTAATGAGGAGAATGCGTTTACAATGCCT
256 TTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCT
* * * * * * *
2498094 AATCACAAAATAAAGGAAGATCA-TAGCTAGAATCCATGCTTGTCGCTTTTGAAGCATGAACTTA
321 AATCACAAAATGAATGAAGATCATTA-CTAGAATCCAAGTTTGTCTCATTTGAGGCATGAACTTA
*
2498158 GACTTTACAAAAA--ATGGTG--AAAAGCCTTTCTTGCGAAACGAAAGCATCAAGATGATGTATC
385 GACTTTACAAAAATGATGG-GAAAAAAGCCTTTCTTGCGAAACGAAAGCATCAATATGATGTATC
* *
2498219 CTAATGAGAAGACAACGTTTATAGTG
449 CTAATGAGAAGACAATGTTTATGGTG
* * * *
2498245 CCTAATCCAAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAAAGGCAAACA
1 CCTAATCCGAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACT
* *
2498310 TTAATTCTATCAAAAACGGTGAAAGGAAAAGTTTTTCTTGCGACATCAAAGCATCAATGTCATGT
66 TTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACATCAAAGCATCAATGTCATGT
* * * * *
2498375 ATCCTAATGAAGAGAATGTGTTTTGGCTTCATAATCTTGAAAAGAACTAAGACAATTACAAGGAT
131 ATCCTAATGAAGGGAATGTGTTTTGGCTTCATAATCTTGAAAAGAACTGAGACAGTTACGAGAAT
* * * *
2498440 CAATTCTTGTCTTATCTAACGTATGAACATCGTTTTAAAGGAAAATAGGCAAAGAATAGA-TTCC
196 CGATTCTTGTCTTATTTAAGGTATGAACATCGTTTTAAAGGAAAATAGGCAAAGAAAAGATTTCC
*** *** *
2498504 AATGCAAAAGAAAATCATCAATATCATTTATGGAAATGAGGAGAATGCATTTATAGTACCTAATC
261 -ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATC
* * * *
2498569 ACAAAATGAATGAGGGTCATTACTAGAATCCACGTTTGTCTCATTTGAGGCATGAACCTAGACTT
325 ACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCATGAACTTAGACTT
** * * * * * * *
2498634 TAACAAATTTGGTGGGAAAAAAGCCTTTCTTGTGAAATGAAAGCATCTATACGAGGTATCCTATT
390 T-ACAAAAATGATGGGAAAAAAGCCTTTCTTGCGAAACGAAAGCATCAATATGATGTATCCTAAT
*
2498699 GAGAAGAAAATGTTTATGGTG
454 GAGAAGACAATGTTTATGGTG
* * * *
2498720 CCTAATTCGAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTTTTATTTAATAGGCAAACT
1 CCTAATCCGAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACT
* * * *
2498785 TTGATTCTATCAAAAAAGGTGGAAGGAAAAGTGTTTCTTGTGACGTCAAAGCATCAATGTCATGT
66 TTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACATCAAAGCATCAATGTCATGT
* * *
2498850 ATCCTAATGAAAGGAATGTGTTTTGGCTTCATAATCTTTAAAAGAACTGAGCCAGTTACGAGAAT
131 ATCCTAATGAAGGGAATGTGTTTTGGCTTCATAATCTTGAAAAGAACTGAGACAGTTACGAGAAT
* *
2498915 TGATTCTTGTCTTATTTAAGGTATGAACGTCGTTTTAAAGGAAAATAGGCAAA-AAATAGA-TTC
196 CGATTCTTGTCTTATTTAAGGTATGAACATCGTTTTAAAGGAAAATAGGCAAAGAAA-AGATTTC
* * **
2498978 CAATGCAAAAAAAAAAAATCATCAATATCATTTATGC-AATGAGGAGAATGCGTTTATAGTGCCT
260 C-ATGC---AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCT
* *
2499042 AATCACAAAATGAATAAAGATCATTACTAGAATCCACA-TTTGTCTCATTTGAGGCAT-AACCTA
321 AATCACAAAATGAATGAAGATCATTACTAGAATCCA-AGTTTGTCTCATTTGAGGCATGAACTTA
** * * * * * *
2499105 GACTTTAACAAATTTGGTGGGAAAAAAGCCTTTCTTGTGAAATGAAAGCATCTATACGAGGTATC
385 GACTTT-ACAAAAATGATGGGAAAAAAGCCTTTCTTGCGAAACGAAAGCATCAATATGATGTATC
*
2499170 CTAATGAGAAGAAAATGTTTATGGTG
449 CTAATGAGAAGACAATGTTTATGGTG
* * **
2499196 CCTAATTCGAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTTTTATTTAAGAGGTAAACT
1 CCTAATCCGAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACT
* * * *
2499261 TTGATTCTATCAAAAAAGGTGGAAGGAAAAGTGTTTCTTGTGACGTCAAAGCATCAATGTCATGT
66 TTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACATCAAAGCATCAATGTCATGT
* * *
2499326 ATCCTAATGAAAGGAATGTGTTTTGGCTTCATAATCTTGAAATGAACTGAGCCAGTTACGAGAAT
131 ATCCTAATGAAGGGAATGTGTTTTGGCTTCATAATCTTGAAAAGAACTGAGACAGTTACGAGAAT
* * * *
2499391 CGATTTTTGTCTCATTTAAAGTATGAACATCGTTTTAAAGGAAAATAGGCAAAGAATAGA-TTCC
196 CGATTCTTGTCTTATTTAAGGTATGAACATCGTTTTAAAGGAAAATAGGCAAAGAAAAGATTTCC
* **
2499455 AATGCAAAAGAAAATCATCAATATCATTTATGC-AATGAGGAGAATGCGTTTATAGTGCCTAATC
261 -ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATC
* * *
2499519 ACAAAATGAATAAAGATCATTACTAGAATCCACGTTTGTCTCATTTGAGGCATTAA-TCTAGACT
325 ACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCATGAACT-TAGACT
* * * * *
2499583 TTA-AAAAATTTGGTTGGAAAAAAGCCTTTCTTGCGAAATGAAAGCATCAACACGATGTATCCTA
389 TTACAAAAA--TGATGGGAAAAAAGCCTTTCTTGCGAAACGAAAGCATCAATATGATGTATCCTA
* **
2499647 ATGAGAAGAAAATGTTTATTTTG
452 ATGAGAAGACAATGTTTATGGTG
** *
2499670 CCTAATTTGAAAAGGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACT
1 CCTAATCCGAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACT
* ** **
2499735 TTGATTCTATCAAAAACGGTGGAAGGAAAAGTGTTTCTTATGATGTCAAAGCATCAATGTCATGT
66 TTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACATCAAAGCATCAATGTCATGT
* *
2499800 ATCCTAATGAAAGGAATGTGTTTTGGCTTTATAATCTTGAAAAGAACTGAG-CTAGTTACGAGAA
131 ATCCTAATGAAGGGAATGTGTTTTGGCTTCATAATCTTGAAAAGAACTGAGAC-AGTTACGAGAA
*
2499864 TCGATTCTTGTCTTATTTAAGGTATGAACATCGTTTTAAAGGAAAATAGGCAAAGAATAGA-TTC
195 TCGATTCTTGTCTTATTTAAGGTATGAACATCGTTTTAAAGGAAAATAGGCAAAGAAAAGATTTC
* **
2499928 CAATGCAAAAGAAAATCATCAATATCATTTATGC-AATGAGGAGAATGCGTTTATAGTGCCTAAT
260 C-ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAAT
* * * *
2499992 CACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGACACGACCTTAGACT
324 CACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCATGAACTTAGACT
* * * *
2500057 TTA-AAAAATTTGGTGGGAAAAAAAACCTTTCTTGCAAAATGAAAGCATCAATACT-ATGTATCC
389 TTACAAAAA--TGATGGG-AAAAAAGCCTTTCTTGCGAAACGAAAGCATCAATA-TGATGTATCC
** * *
2500120 TAAAAAGAAGGCAATGTTTATGTTG
450 TAATGAGAAGACAATGTTTATGGTG
* * ** *
2500145 CCTTATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTGATATTTAAGAGATAAACT
1 CCTAATCCGAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACT
* * * * * *
2500210 TTGATTTTATCAAAAACGGTGGAAAGAAATGTGTTTCTTGCTAC-TCCAAAGCATCAATTTCATG
66 TTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACAT-CAAAGCATCAATGTCATG
* * ** * ** **
2500274 TATCCTATTGAAGGGAATGTG-TTTGTC-TCCCAATC-TCATAAAGAAAGGAGATTGTTACGAGA
130 TATCCTAATGAAGGGAATGTGTTTTGGCTTCATAATCTTGA-AAAGAACTGAGACAGTTACGAGA
** * * * * *
2500336 ATTAATGCTTGTCTTATTTAAGAG-ATGAACTTTGATTTAAAGGAAACTAAGGCAAAGAAAAGAT
194 ATCGATTCTTGTCTTATTTAAG-GTATGAACATCGTTTTAAAGGAAAAT-AGGCAAAGAAAAGAT
* * * * * *
2500400 TTCCAAGGAAAAAGAAAATCATCAATTTCTTTTATCCTAATGAGGGGAATGTGTTTATAGTGCCT
257 TTCC-ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCT
* *
2500465 AATCACAAAATAGAA-GAAGATCATTACTAAAATCCAAGTTTGTCTCATTTGAGGCACGAACTTA
321 AATCACAAAAT-GAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCATGAACTTA
* * *
2500529 GACTTGATCAAAAATGGTGGGAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAA-ATGATGTATC
385 GACTTTA-CAAAAATGATGGGAAAAAAGCCTTTCTTGCGAAACGAAAGCATCAATATGATGTATC
* *
2500593 CTAATGAGAAGACAACGTTTATAGTG
449 CTAATGAGAAGACAATGTTTATGGTG
* * * * *
2500619 CCTAATCCAAAAAAGAATGCGGATTAGTATGAGTATTTATGTTTGTTTTATTTAAAAGGA-AAAC
1 CCTAATCCGAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGA-GACAAAC
* *
2500683 TTTGATTCTATCAAAAATGGTGGAAGGAAAAGTTTTTCTTACGACATCAAAGCATCAATGTCATG
65 TTTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACATCAAAGCATCAATGTCATG
* * *
2500748 TATCCTAATGAAGAGAATGTGTTTTGGCTTCATAATCTTGAAAAGAACTGAGACAATTACGAGGA
130 TATCCTAATGAAGGGAATGTGTTTTGGCTTCATAATCTTGAAAAGAACTGAGACAGTTACGAGAA
* * *
2500813 TCGATTCTTGTCTTATCTAAGGTATGAACATCATTTTAAAGGAAAATAGGCAAAGAATAGA-TTC
195 TCGATTCTTGTCTTATTTAAGGTATGAACATCGTTTTAAAGGAAAATAGGCAAAGAAAAGATTTC
* **
2500877 CAATGCAAAAGAAAATCATCAATATCATTTATGCTAATGAGGAGAATGGGTTTATAGTGCCTAAT
260 C-ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAAT
* * *
2500942 CACAAAATGAATGAAGGTCATTACTAGAATCCACGTTTGTCTCATTTGAGGCATGAACCTAGACT
324 CACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCATGAACTTAGACT
* * * * *
2501007 TTA-ACAAATTTAGTGGGAAAAAAGCCTTTCTTGCGAAATGAAAGCATCAATACGAGGTATCCTA
389 TTACA-AAAATGA-TGGGAAAAAAGCCTTTCTTGCGAAACGAAAGCATCAATATGATGTATCCTA
*
2501071 ATGAGAAGAAAATGTTTATGGTG
452 ATGAGAAGACAATGTTTATGGTG
* * * *
2501094 CCTAATCTGAAAAAGAATGGGGATTAGTTTGAGTATTCATGTTTGTTTTATTTAAGAGAAAAACT
1 CCTAATCCGAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACT
* * *
2501159 TTGATTCTATCAAAAACGGTGGAAGGAAAAGTGTTTCTTGTGACGTCAAAGCATCAATGTCATGT
66 TTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACATCAAAGCATCAATGTCATGT
* * *
2501224 ATCCTAATGAAGGGAATGTGTTTTGGCTTCATAATCTTGAAAAGAACTGAGCCAGTTGCGAGAGT
131 ATCCTAATGAAGGGAATGTGTTTTGGCTTCATAATCTTGAAAAGAACTGAGACAGTTACGAGAAT
* * * *
2501289 TGATTCTTGTCTTATTTAAGGTATGAACAT--TGTTAAAGGAAAATAGGCAAAGAGAAGATTCCC
196 CGATTCTTGTCTTATTTAAGGTATGAACATCGTTTTAAAGGAAAATAGGCAAAGAAAAGATTTCC
*
2501352 ATGCAAAAAAAAAAATCATCAATATCATTTA
261 ATGC--AAAAGAAAATCATCAATATCATTTA
2501383 AGGGATTGTT
Statistics
Matches: 6669, Mismatches: 1023, Indels: 596
0.80 0.12 0.07
Matches are distributed among these distances:
468 112 0.02
469 9 0.00
470 108 0.02
471 502 0.08
472 297 0.04
473 575 0.09
474 1469 0.22
475 1752 0.26
476 816 0.12
477 364 0.05
478 33 0.00
479 5 0.00
480 11 0.00
481 10 0.00
482 9 0.00
483 9 0.00
484 7 0.00
485 10 0.00
486 13 0.00
487 12 0.00
489 1 0.00
490 3 0.00
491 1 0.00
492 10 0.00
493 6 0.00
494 12 0.00
495 4 0.00
497 2 0.00
498 1 0.00
501 3 0.00
502 8 0.00
503 3 0.00
504 2 0.00
506 1 0.00
507 4 0.00
508 4 0.00
509 8 0.00
510 17 0.00
511 11 0.00
512 8 0.00
513 1 0.00
514 3 0.00
515 1 0.00
516 2 0.00
518 12 0.00
519 8 0.00
520 5 0.00
521 2 0.00
522 9 0.00
523 14 0.00
524 18 0.00
525 5 0.00
526 3 0.00
527 12 0.00
528 9 0.00
529 6 0.00
530 6 0.00
532 6 0.00
533 6 0.00
534 10 0.00
535 13 0.00
536 3 0.00
537 7 0.00
538 23 0.00
539 15 0.00
540 9 0.00
541 3 0.00
542 6 0.00
543 8 0.00
544 13 0.00
546 2 0.00
547 1 0.00
548 3 0.00
549 1 0.00
550 7 0.00
551 11 0.00
552 19 0.00
553 8 0.00
554 4 0.00
555 3 0.00
556 1 0.00
558 2 0.00
559 4 0.00
560 8 0.00
561 3 0.00
564 1 0.00
565 3 0.00
566 1 0.00
567 4 0.00
568 14 0.00
569 6 0.00
570 9 0.00
571 1 0.00
572 3 0.00
573 1 0.00
575 15 0.00
576 15 0.00
577 8 0.00
578 9 0.00
579 11 0.00
580 7 0.00
581 8 0.00
582 4 0.00
583 2 0.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (474 bp):
CCTAATCCGAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACT
TTGATTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCGACATCAAAGCATCAATGTCATGT
ATCCTAATGAAGGGAATGTGTTTTGGCTTCATAATCTTGAAAAGAACTGAGACAGTTACGAGAAT
CGATTCTTGTCTTATTTAAGGTATGAACATCGTTTTAAAGGAAAATAGGCAAAGAAAAGATTTCC
ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCA
CAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCATGAACTTAGACTTT
ACAAAAATGATGGGAAAAAAGCCTTTCTTGCGAAACGAAAGCATCAATATGATGTATCCTAATGA
GAAGACAATGTTTATGGTG
Found at i:2497432 original size:949 final size:946
Alignment explanation
Indices: 2495588--2506524 Score: 9726
Period size: 950 Copynumber: 11.3 Consensus size: 946
2495578 TAAGGGATTA
* * * * * *
2495588 TTACGAGAAGT-AATGCTTGTTTTATTTAGGGGATGAGCTTTGATTTT-AAGGAAAATAGGGCAA
1 TTACGAGAA-TCAATTCTTGTCTTATTTAAGGTATGAACATTG-TTTTAAAGGAAAATA-GGCAA
* * * * * *
2495651 AGAAAATATTTCCATGCAAAAGAAAATCATTAATTTCTTTTATCCTAATGAGGGGAATGTGTTTA
63 AGAAAAGATTCCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
* *
2495716 TAGTGCCTAATCACAAAAAGAAAGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCAC
128 TAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCAC
* *
2495781 GAACTTAGACTTTATCAAAAATGGTTGGAAAAAAGCCTTTCTTGCAAAATGAAAGCATCAATATG
193 GAACTTAGACTTTA-CAAAAATGGTGGGAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATG
* * * * * * * * *
2495846 ATGTATCCAAAGGAGAA-AACTATGATTATAGTACCTTATCTTG-AAAGAACGGGGATTAGTATA
257 ATGTATCCTAATGAGAAGAA--ATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATG
*
2495909 AGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAAGGAAAAG
320 AGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAG
* * ** *
2495974 TTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAAGGAAGGGAATGTTTTTTGGC-TC-
385 TGTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTTTTGGCTTCA
* *** ** * * *
2496037 CGATTCTCCTAAAGAA-TGGAGATTGTTACGAGAATCAATGCCTGTCTTATTTAAGGGATAAACT
450 C-AATCTTGAAAAGAACT-GAGACAGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACT
*
2496101 TTGATTTAAAGGAAAATAAGGCAAAGAAAAGATTTCC-ATGCAAAAGAAAATCATCAATATTATT
513 TTGATTTAAAGGAAAAT-AGGCAAAGAAAAGA-TTCCAATGCAAAAGAAAATCATCAATATCATT
** * * * *
2496165 TATCCTAATGAGGAGAATATGTTTACAGTGCCTAATCGCAAAGTGAAGGAAGATCATTACTAGAA
576 TATCCTAATGAGGAGAATGCGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAA
* * *
2496230 TCCGTGTTTGTCTCTTTTGAA-GCACGAACTTAGGCTTTACAAAAAA-GGGTGAGAAAAAAGCCT
641 TCCATGTTTGTCTCATTT-AAGGCACGAACTTAGACTTTA-AAAAAATGGG-GAGAAAAAAGCCT
* * * * *
2496293 TTCTTGCGAATCGAAAGCATCATTATGATGTATCGTAATA-AGAAGACAATGTTTATGGTGCCTA
703 TTCTTGCGAAACGAAAGCATCAATACGATGTATCCTAA-AGAGAAAACAATGTTTATGGTGCCTA
* * *
2496357 ATGCGGAAAAGAATGGGGATTAGTATGAGTATTCATATTTGTCTTATTTAAGAGTCAAACTTTGA
767 AT-CTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* *
2496422 TTCTATCAAAAACGGTGGAAGGAAAAGTTTTTCTTGCAACATCAAAGCATCAATGTCATGTATCC
831 TTCTATCAAAAACGGTGGAAGGAAAAGTGTTTCTTGCGACATCAAAGCATCAATGTCATGTATCC
* * * * * *
2496487 TAATGAAGGGAATTTGTTTTGACTTCACAATCTTGAAAAAAACTAAGATAG
896 TAATGAAGGGAATGTGTTTTGGCTTCATAATCTTGAAAAGAACTGAGACAG
* * * * *
2496538 TTACGAGAATCAAGTCTTGTCTTATTTAAGGTGTGAACATTGTTTTAAATGAGAACAGGCAAAGA
1 TTACGAGAATCAATTCTTGTCTTATTTAAGGTATGAACATTGTTTTAAAGGAAAATAGGCAAAGA
* * *
2496603 AAA-AGTTCCCATGTAAAAGAAAATCATCAATATCATTTATCCTAGTGA-GACGAATATGTTTAT
66 AAAGA-TTCCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGA-GAATGTGTTTAT
** * * ** *
2496666 AGCACCTAATCACAAAATGAATGAAGATCGTTACTAGAATTCAAGTCCGTCTCATTTGAGACACG
129 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCACG
* * * * *
2496731 AACTTAGACTTTACAAAAAATAGG-GGGAAAAATGCGTATCTTGCAAAACGAAAGCATCATTATT
194 AACTTAGACTTTAC-AAAAAT-GGTGGGAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATG
* * *
2496795 TTATATCCT-ATAGAGAAGAATATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATG
257 ATGTATCCTAAT-GAGAAGAA-ATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATG
* * * * * * *
2496859 TGTATTTATGTTTATCTTATTTAAGAGAAAAACTTTGATTCTATCGAAAACAGTGGAAAGAAAAG
320 AGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAG
*
2496924 T-TCTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAATAAAGGGAATGTGTTTTGGCTTC
385 TGT-TTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTTTTGGCTTC
* *
2496988 ACAATCTTGAAAAGATCTGAGACAATTACGAGAATCGATGCTTGTCTT-TTTAAAGGGATGAACT
449 ACAATCTTGAAAAGAACTGAGACAGTTACGAGAATCGATGCTTGTCTTATTT-AAGGGATGAACT
* * * * * *
2497052 TTGATTTAAAGGCAAATAAGGCAAAGAAAAAATTTTC-ATGCAAAAAAAAACCATTAATATCATT
513 TTGATTTAAAGGAAAAT-AGGCAAAGAAAAGA-TTCCAATGCAAAAGAAAATCATCAATATCATT
* * ** * * *
2497116 TATCCTAATGCGGGGAATATGTTTGTAGTGCCTAATCACAAAATGAATGAATATCACTACTAGAA
576 TATCCTAATGAGGAGAATGCGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAA
* * *
2497181 TCCAAGTTTATCTAATTTAAGGCACGAA-TTAGACTTTACAAAAAATGGGGAGAAAAAAG-CTTT
641 TCCATGTTTGTCTCATTTAAGGCACGAACTTAGACTTTA-AAAAAATGGGGAGAAAAAAGCCTTT
* * * * * * * *
2497244 CTTGTGAAACAAAAGCATCAATACGATGTATCCGAAAGAGAAAACTATGATTATAGTACCTTATC
705 CTTGCGAAACGAAAGCATCAATACGATGTATCCTAAAGAGAAAACAATGTTTATGGTGCCTAATC
*
2497309 TTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTGAGAGACAAACTTTGATTC
770 -TGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
* * * * * *
2497374 TATCAAAAACGATGGAAGGAAAAGTTTTTCTTGCAACACCAAAGCATCAATTTCATGTATGCTAA
834 TATCAAAAACGGTGGAAGGAAAAGTGTTTCTTGCGACATCAAAGCATCAATGTCATGTATCCTAA
* * * *** **
2497439 GGAAGGGAATGTTTTTTGGC-TC-TGATTCTCCTAAAGAA-TGGAGATTG
899 TGAAGGGAATGTGTTTTGGCTTCAT-AATCTTGAAAAGAACT-GAGACAG
* * * * * * *
2497486 TTACGAGAATCGATGCTTGTCTTATTTAGGGGATAAACTTTGATTTAAAGGAAAATAGGCCAAAG
1 TTACGAGAATCAATTCTTGTCTTATTTAAGGTATGAACATTGTTTTAAAGGAAAATAGG-CAAAG
* * *
2497551 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTACA
65 AAAAGATTCCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* * * * *
2497616 GTGTCTAATCACAAAATGAAGGAAGATCATTACTAGAATCCATGTTTGTCTCTTTTGAAGCACGA
130 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCACGA
* * * * **
2497681 ACTTAGGCTTTACAAAAAGGGGTGAGAAAAAAGCATTTCTTGTGAAACGAAAGCATCAATATGAT
195 ACTTAGACTTTACAAAAA-TGGTGGGAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATGAT
** *
2497746 GTATTGTAATGAGAAGACAATGTTTATGGTGCCTAAT-CTAGAAAAGAGTGGGGATTAGTATGAG
259 GTATCCTAATGAGAAGA-AATGTTTATGGTGCCTAATCCT-GAAAAGAATGGGGATTAGTATGAG
* * * * *
2497810 TATTCATGTTTCTCTTATTTATGAGAC--AGTTTGATTTTATCAAAAACGGTGGAAGGAAAAGTA
322 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTG
* * * * * *
2497873 TTTCTTGCGAC-CACAAAGCATCAATTTCATGTATCCTATTGAGGGGAATGTG-TTTGTC-TCCC
387 TTTCTTGCGACAC-CAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTTTTGGCTTCAC
* ** * * ** *
2497935 AATC-TCATAAAGAA-TGGAGATTGTTACGAGAATCAATGCCTACCTTATTTATGGGATGAACTT
451 AATCTTGA-AAAGAACT-GAGACAGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTT
* * * *
2497998 TGATTTAAAGGAAAATAGGGCAAAAAAAAGATTTCC-ATGCAAAAGAAAACCGTCAATATTATTT
514 TGATTTAAAGGAAAATA-GGCAAAGAAAAGA-TTCCAATGCAAAAGAAAATCATCAATATCATTT
* * * *
2498062 ATCCTAATGAGGAGAATGCGTTTACAATGCCTAATCACAAAATAAAGGAAGATCA-TAGCTAGAA
577 ATCCTAATGAGGAGAATGCGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA-CTAGAA
* * * * *
2498126 TCCATGCTTGTCGCTTTTGAA-GCATGAACTTAGACTTTACAAAAAAT--GGTG--AAAAGCCTT
641 TCCATGTTTGTCTCATTT-AAGGCACGAACTTAGACTTTA-AAAAAATGGGGAGAAAAAAGCCTT
* * * * * *
2498186 TCTTGCGAAACGAAAGCATCAAGATGATGTATCCTAATGAGAAGACAACGTTTATAGTGCCTAAT
704 TCTTGCGAAACGAAAGCATCAATACGATGTATCCTAAAGAGAAAACAATGTTTATGGTGCCTAAT
** * * * *
2498251 CCAAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAAAGGCAAACATTAATT
769 -CTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
* *
2498316 CTATCAAAAACGGTGAAAGGAAAAGTTTTTCTTGCGACATCAAAGCATCAATGTCATGTATCCTA
833 CTATCAAAAACGGTGGAAGGAAAAGTGTTTCTTGCGACATCAAAGCATCAATGTCATGTATCCTA
* * *
2498381 ATGAAGAGAATGTGTTTTGGCTTCATAATCTTGAAAAGAACTAAGACAA
898 ATGAAGGGAATGTGTTTTGGCTTCATAATCTTGAAAAGAACTGAGACAG
* * * * *
2498430 TTACAAGGATCAATTCTTGTCTTATCTAACGTATGAACATCGTTTTAAAGGAAAATAGGCAAAGA
1 TTACGAGAATCAATTCTTGTCTTATTTAAGGTATGAACATTGTTTTAAAGGAAAATAGGCAAAGA
* * *** **
2498495 ATAGATTCCAATGCAAAAGAAAATCATCAATATCATTTATGGAAATGAGGAGAATGCATTTATAG
66 AAAGATTCCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAG
* * * * *
2498560 TACCTAATCACAAAATGAATGAGGGTCATTACTAGAATCCACGTTTGTCTCATTTGAGGCATGAA
131 TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCACGAA
* ** ** * * * *
2498625 CCTAGACTTTAACAAATTTGGTGGGAAAAAAGCCTTTCTTGTGAAATGAAAGCATCTATACGAGG
196 CTTAGACTTT-ACAAAAATGGTGGGAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATGATG
* *
2498690 TATCCTATTGAGAAGAAAATGTTTATGGTGCCTAATTC-GAAAAAGAATGGGGATTAGTATGAGT
260 TATCCTAATGAGAAG-AAATGTTTATGGTGCCTAATCCTG-AAAAGAATGGGGATTAGTATGAGT
* * * *
2498754 ATTCATGTTTGTTTTATTTAATAGGCAAACTTTGATTCTATCAAAAAAGGTGGAAGGAAAAGTGT
323 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTGT
* ** *
2498819 TTCTTGTGACGTCAAAGCATCAATGTCATGTATCCTAATGAAA-GGAATGTGTTTTGGCTTCATA
388 TTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT-AAAGGGAATGTGTTTTGGCTTCACA
* * * * * * * *
2498883 ATCTTTAAAAGAACTGAGCCAGTTACGAGAATTGATTCTTGTCTTATTTAAGGTATGAACGTCGT
452 ATCTTGAAAAGAACTGAGACAGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGA
*
2498948 TTTAAAGGAAAATAGGCAAA-AAATAGATTCCAATGCAAAAAAAAAAAATCATCAATATCATTTA
517 TTTAAAGGAAAATAGGCAAAGAAA-AGATTCCAATGC---AAAAGAAAATCATCAATATCATTTA
* *
2499012 TGC-AATGAGGAGAATGCGTTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATC
578 TCCTAATGAGGAGAATGCGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC
** * * * **
2499076 CACATTTGTCTCATTTGAGGCA-TAACCTAGACTTTAACAAATTTGGTGG-GAAAAAAGCCTTTC
643 CATGTTTGTCTCATTTAAGGCACGAACTTAGACTTTAA-AAAAATGG-GGAGAAAAAAGCCTTTC
* * * * *
2499139 TTGTGAAATGAAAGCATCTATACGAGGTATCCTAATGAGAAGAA-AATGTTTATGGTGCCTAAT-
706 TTGCGAAACGAAAGCATCAATACGATGTATCCTAAAGAGAA-AACAATGTTTATGGTGCCTAATC
* **
2499202 TCGAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTTTTATTTAAGAGGTAAACTTTGATT
770 T-G-AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
* * *
2499267 CTATCAAAAAAGGTGGAAGGAAAAGTGTTTCTTGTGACGTCAAAGCATCAATGTCATGTATCCTA
833 CTATCAAAAACGGTGGAAGGAAAAGTGTTTCTTGCGACATCAAAGCATCAATGTCATGTATCCTA
* * *
2499332 ATGAAAGGAATGTGTTTTGGCTTCATAATCTTGAAATGAACTGAGCCAG
898 ATGAAGGGAATGTGTTTTGGCTTCATAATCTTGAAAAGAACTGAGACAG
* * * * *
2499381 TTACGAGAATCGATTTTTGTCTCATTTAAAGTATGAACATCGTTTTAAAGGAAAATAGGCAAAGA
1 TTACGAGAATCAATTCTTGTCTTATTTAAGGTATGAACATTGTTTTAAAGGAAAATAGGCAAAGA
* * * *
2499446 ATAGATTCCAATGCAAAAGAAAATCATCAATATCATTTATGC-AATGAGGAGAATGCGTTTATAG
66 AAAGATTCCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAG
* * **
2499510 TGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCACGTTTGTCTCATTTGAGGCATTAA
131 TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCACGAA
* * * * *
2499575 -TCTAGACTTTA-AAAAATTTGGTTGGAAAAAAGCCTTTCTTGCGAAATGAAAGCATCAACACGA
196 CT-TAGACTTTACAAAAA--TGGTGGGAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATGA
** *
2499638 TGTATCCTAATGAGAAGAAAATGTTTATTTTGCCTAAT-TTGAAAAGGAATGGGGATTAGTATGA
258 TGTATCCTAATGAGAAG-AAATGTTTATGGTGCCTAATCCTGAAAA-GAATGGGGATTAGTATGA
2499702 GTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGT
321 GTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGT
** *** *
2499767 GTTTCTTATGATGTCAAAGCATCAATGTCATGTATCCTAATGAAA-GGAATGTGTTTTGGCTTTA
386 GTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT-AAAGGGAATGTGTTTTGGCTTCA
* * * *
2499831 TAATCTTGAAAAGAACTGAG-CTAGTTACGAGAATCGATTCTTGTCTTATTTAAGGTATGAACAT
450 CAATCTTGAAAAGAACTGAGAC-AGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTT
* * *
2499895 CGTTTTAAAGGAAAATAGGCAAAGAATAGATTCCAATGCAAAAGAAAATCATCAATATCATTTAT
514 TGATTTAAAGGAAAATAGGCAAAGAAAAGATTCCAATGCAAAAGAAAATCATCAATATCATTTAT
*
2499960 GC-AATGAGGAGAATGCGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
579 CCTAATGAGGAGAATGCGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
* * * * *
2500024 ATGTTTGTCTCATTTGAGACACGACCTTAGACTTTAAAAAATTTGGTGG-GAAAAAAAACCTTTC
644 ATGTTTGTCTCATTTAAGGCACGAACTTAGACTTTAAAAAA-ATGG-GGAG-AAAAAAGCCTTTC
* * * * ** * *
2500088 TTGCAAAATGAAAGCATCAATACTATGTATCCTAAAAAGAAGGCAATGTTTATGTTGCCTTATCC
706 TTGCGAAACGAAAGCATCAATACGATGTATCCTAAAGAGAAAACAATGTTTATGGTGCCTAAT-C
* ** * *
2500153 TAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTGATATTTAAGAGATAAACTTTGATTTT
770 TGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
* * * * *
2500218 ATCAAAAACGGTGGAAAGAAATGTGTTTCTTGCTAC-TCCAAAGCATCAATTTCATGTATCCTAT
835 ATCAAAAACGGTGGAAGGAAAAGTGTTTCTTGCGACAT-CAAAGCATCAATGTCATGTATCCTAA
* ** * ** **
2500282 TGAAGGGAATGTG-TTTGTC-TCCCAATC-TCATAAAGAAAGGAGATTG
899 TGAAGGGAATGTGTTTTGGCTTCATAATCTTGA-AAAGAACTGAGACAG
* * * * *
2500328 TTACGAGAATTAATGCTTGTCTTATTTAAGAG-ATGAACTTTGATTTAAAGGAAACTAAGGCAAA
1 TTACGAGAATCAATTCTTGTCTTATTTAAG-GTATGAACATTGTTTTAAAGGAAAAT-AGGCAAA
* * * * * *
2500392 GAAAAGATTTCCAAGGAAAAAGAAAATCATCAATTTCTTTTATCCTAATGAGGGGAATGTGTTTA
64 GAAAAGA-TTCCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
*
2500457 TAGTGCCTAATCACAAAATAGAA-GAAGATCATTACTAAAATCCAAGTTTGTCTCATTTGAGGCA
128 TAGTGCCTAATCACAAAAT-GAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCA
*
2500521 CGAACTTAGACTTGATCAAAAATGGTGGGAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAA-AT
192 CGAACTTAGACTTTA-CAAAAATGGTGGGAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAATAT
* * ** *
2500585 GATGTATCCTAATGAGAAGACAACGTTTATAGTGCCTAATCCAAAAAAGAATGCGGATTAGTATG
256 GATGTATCCTAATGAGAAGA-AATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATG
* * * *
2500650 AGTATTTATGTTTGTTTTATTTAAAAGGA-AAACTTTGATTCTATCAAAAATGGTGGAAGGAAAA
320 AGTATTCATGTTTGTCTTATTTAAGA-GACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAA
* * * * *
2500714 GTTTTTCTTACGACATCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTGGCTTC
384 GTGTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTTTTGGCTTC
* * * * * * *
2500779 ATAATCTTGAAAAGAACTGAGACAATTACGAGGATCGATTCTTGTCTTATCTAAGGTATGAAC-A
449 ACAATCTTGAAAAGAACTGAGACAGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTT
* *
2500843 TCATTTTAAAGGAAAATAGGCAAAGAATAGATTCCAATGCAAAAGAAAATCATCAATATCATTTA
514 TGA-TTTAAAGGAAAATAGGCAAAGAAAAGATTCCAATGCAAAAGAAAATCATCAATATCATTTA
* * *
2500908 TGCTAATGAGGAGAATGGGTTTATAGTGCCTAATCACAAAATGAATGAAGGTCATTACTAGAATC
578 TCCTAATGAGGAGAATGCGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC
* * * * ** *
2500973 CACGTTTGTCTCATTTGAGGCATGAACCTAGACTTTAACAAATTTAGTGG-GAAAAAAGCCTTTC
643 CATGTTTGTCTCATTTAAGGCACGAACTTAGACTTTAA-AAAAAT-GGGGAGAAAAAAGCCTTTC
* * *
2501037 TTGCGAAATGAAAGCATCAATACGAGGTATCCTAATGAGAAGAA-AATGTTTATGGTGCCTAATC
706 TTGCGAAACGAAAGCATCAATACGATGTATCCTAAAGAGAA-AACAATGTTTATGGTGCCTAATC
* * *
2501101 TGAAAAAGAATGGGGATTAGTTTGAGTATTCATGTTTGTTTTATTTAAGAGAAAAACTTTGATTC
770 TG-AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
* *
2501166 TATCAAAAACGGTGGAAGGAAAAGTGTTTCTTGTGACGTCAAAGCATCAATGTCATGTATCCTAA
834 TATCAAAAACGGTGGAAGGAAAAGTGTTTCTTGCGACATCAAAGCATCAATGTCATGTATCCTAA
*
2501231 TGAAGGGAATGTGTTTTGGCTTCATAATCTTGAAAAGAACTGAGCCAG
899 TGAAGGGAATGTGTTTTGGCTTCATAATCTTGAAAAGAACTGAGACAG
* * **
2501279 TTGCGAGAGTTGATTCTTGTCTTATTTAAGGTATGAACATTG--TTAAAGGAAAATAGGCAAAGA
1 TTACGAGAATCAATTCTTGTCTTATTTAAGGTATGAACATTGTTTTAAAGGAAAATAGGCAAAGA
* * ** * *
2501342 GAAGATTCCCATGCAAAAAAAAAAATCATCAATATCATTTAAGGGATTGTTATGAGAAGTAATGC
66 AAAGATTCCCATGC--AAAAGAAAATCATCAATATCATTT-----ATCCTAATGAGGAG-AATG-
* * * * * *
2501407 TTGTCTTATTTAAGGGATGAGCTTTGATTTTA-AGGACAATAGGGCAAAGAAAAATTTCCATGCA
122 -TGT-TTA--T-A--G-T--GC-CT-A-ATCACA--A-AAT---G-AATG-AAGA--T-CAT-TA
** * * * * * * * *
2501471 AAAGAAAAT-CATTAATTTCTTTTATCCTAATGAGG-A-GAATGGGTTTATAGTGCCTAATCACA
162 CTAG--AATCCA--AGTTTGTCTCAT--T--TGAGGCACGAA-----CT-TAG-ACTTTA-CA-A
* ** * **
2501533 AAATGAATGAAGGTCATTACTAGAATCCACGTTTGTCTCATTTGAGGCATGAAC-CTAGACTTTA
210 AAATG-GTG--GG--A--A--A-AA---A-GCCT-T-TC--TT---GCA-AAACGAAAG-C---A
* *** * ** * * * *
2501597 ACAAATTTAGTGGGAAAAAAGCCTTTCTTGCGAAATGAAA-GCATCAATACGAGGTATCCTAATG
249 TC-AA--TA-T--G-ATGTATCC--TAATGAG-AA-GAAATG--T--TTA--TGGT-GCCTAAT-
*** * * * * * *
2501661 AGAAGAAAATGTTTATGGTGCCTAATCTGAAAAAGAATGGGGATTAGTTTGAGTATTCATGT-TT
295 -CCTGAAAA-GA--ATGG-G---GAT-T-----AGTAT---GAGTA--TTCA-TGTT--TGTCTT
* ** * * *
2501725 GTTTTATTTAAGAGAAAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTGTTTCTTGTGAC
338 -ATTTA--AGAGACAAAC--TTTGATTCTATCAAAAACGGTGGAAGGAAAAGTGTTTCTTGCGAC
** * *
2501790 GTCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCATAATCTTGAAAAG
398 ACCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTTTTGGCTTCACAATCTTGAAAAG
* * * * * * * *
2501855 AATTGAGCCAGTTGCGAGAGTTGATTCTTGTCTTATTTAAGGTATGAACATTG--TTAAAGGAAA
463 AACTGAGACAGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAA
* * * ** *
2501918 ATAGGCAAAGAGAAGATTCCCATGCAAAAAAAAAAATCATCAATATCATTTAAGGGATTGTTATG
528 ATAGGCAAAGAAAAGATTCCAATGC--AAAAGAAAATCATCAATATCATTT-----ATCCTAATG
* * * * * *
2501983 AGAAGTAATGCTTGTCTTATTTAAGGGATGAGCTTTGATTTTA-AGGACAATAGGGCAAAGAAAA
586 AGGAG-AATGC--GT-TTA--T-A--G-T--GC-CT-A-ATCACA--A-AAT---G-AATG-AAG
* ** * * * * * ** * * *
2502047 ATTTCCATGCAAAAGAAAAT-CATTAATTTCTTTTATCCTAATGAG-GGGAATGTGTTTATAGTG
628 A--T-CAT-TACTAG--AATCCA-T-GTTTGTCTCAT-TTAA-G-GCACGAA----CTTAGACT-
* * * * * * *
2502110 CCTAATCACAAAAAGAAAGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGACACGAACT
677 -TTAA--A-AAAATG--GGGAGA--A--A--A-AAGCC-----T-T-TC--TTGCGAAACGAA--
** * * * *
2502175 TAGACTTTATCAAAAATGGTGGGAAAAAAGCCTTTCTTGCAAA-ACGAAAGCATCAATATGATGT
718 -AG-C---ATC---AA---T----ACGATG--TATCCT--AAAGA-GAAA--A-C-A-ATG-TTT
*** *** * * * *
2502239 ATCCAAAAGAGAAAACTACGATTATAGTACCTTATCTTGAAAGAATGGGGATTAGTATAAGTATT
757 AT---GGTGCCTAATCT--GA--AAAG-A--AT-------------GGGGATTAGTATGAGTATT
* * *
2502304 CATGTTTGCCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAAGGAAAAGTTTTTC
799 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTGTTTC
* * * * * *
2502369 TTACGACACCAAAGCATCATTTTCATGTATCCTAATGAAGGGAATGTATTTTGGCTCCGAT--TC
864 TTGCGACATCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTC-ATAATC
*** * *
2502432 TCCTAAAGAACGGAGATTA-
928 TTGAAAAGAACTGAGA-CAG
* * * * * * * *
2502451 TTATGAGAATCGATTCCTGTGTTATTTAAGGGATAAACTTTGATTTAAAGGAAAATAGGGCAAAG
1 TTACGAGAATCAATTCTTGTCTTATTTAAGGTATGAACATTGTTTTAAAGGAAAATA-GGCAAAG
* * * *
2502516 AAAAGATT-TCATGCAAAAGAAAATCACCAATATCATTTATCCTAATGAGGAGAATATGTTTACA
65 AAAAGATTCCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* * * * ** *
2502580 GTGCCTAATCACTAAATGAAGGAAGATCATTGCTAGAATCCATGTTTGTCTTTTTTGAAGCACGA
130 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCACGA
* * * * *
2502645 ACTTAGGCTTTACAAAAAATGGTGAGAAAAAAGCCTTTCTTGCGAAATGAAAGGATCAATATGAT
195 ACTTAGACTTTAC-AAAAATGGTGGGAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATGAT
* * *
2502710 GTATCGTAATGAGAAGACAATATTTATGGTGCCTAATCCTGAAAATAATGGGGATTAGTATGAGT
259 GTATCCTAATGAGAAGA-AATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGT
* * * *
2502775 ATTCATGTTTGTCTTCTTTATGAGACAAACTTTGATTTTATCAAAAATGGTGGAAGGAAAAGTGT
323 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTGT
* ** *
2502840 TTCTTGCGAC-CACAAAGCATCAATTTCATGTATCCT-ATTGAGGCGAATGTG-TTT-G-TGTCC
388 TTCTTGCGACAC-CAAAGCATCAATGTCATGTATCCTAATAAAGG-GAATGTGTTTTGGCT-TCA
* * ** * * ** * *
2502900 CAATC-TCATAAAGAA-AGAGATTGTTATGGGAATTAATGCTT-TCTTATTTATGGGATGAGCTT
450 CAATCTTGA-AAAGAACTGAGACAGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTT
* * * * * * *
2502962 TGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTCTATGCAAAAGAAAATTATCAATTTCTTTTA
514 TGATTTAAAGGAAAATA-GGCAAAGAAAAGATTCCAATGCAAAAGAAAATCATCAATATCATTTA
* * *
2503027 TCCTAATGAGGGGAATGTGTTTATAGTGCCTAATCACAAAATGAAAGAAGATCATTACTAGAATC
578 TCCTAATGAGGAGAATGCGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC
* * * *
2503092 CAAGTTTGTCTCATTTAAGGCACGAACTTAGACTTTATCAAAAATGGTGG-GAAAAATGCGTTTC
643 CATGTTTGTCTCATTTAAGGCACGAACTTAGACTTTA-AAAAAATGG-GGAGAAAAAAGCCTTTC
* * * * * * * *
2503156 TTGCAAAACAAAAGCATCGATATGATGTATCCTAATGAGAAGACAATGTTTATAGTGCCTAATCC
706 TTGCGAAACGAAAGCATCAATACGATGTATCCTAAAGAGAAAACAATGTTTATGGTGCCTAATCT
*
2503221 GAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCATATTTAAGAGACAAACTTTGATT-T
771 G-AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
* * * * * *
2503285 CATCAAAAACAGTTGAAGGAAAAGTGTTTCTTGTGACCA-CAAAGCATCAATTTCATCTGTCCTA
835 -ATCAAAAACGGTGGAAGGAAAAGTGTTTCTTGCGA-CATCAAAGCATCAATGTCATGTATCCTA
* * * ** * * ** **
2503349 TTGAGGGGAATGTG-TTTGTC-TCCCAATC-TCATAGAGAAAGGAGATTG
898 ATGAAGGGAATGTGTTTTGGCTTCATAATCTTGA-AAAGAACTGAGACAG
* * * * * *
2503396 TTATGAGAATTAATGCTTGTCTTATTTAAGGGATGAGCTTTGATTTT-AAGGAAAATAGGGCAAA
1 TTACGAGAATCAATTCTTGTCTTATTTAAGGTATGAACATTG-TTTTAAAGGAAAATA-GGCAAA
* * * *
2503460 GAAAAGATTTCCATGCAAAAGAAAATCATCAATTTCTTTTATCCTAATGAGGGGAATGTGTTTAT
64 GAAAAGATTCCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTAT
* ** *
2503525 AGTGCCTAATCACAAAAAGAAAAAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCATG
129 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCACG
*
2503590 AACTTAGACTTTATCAAAAATGGTGAGAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATGA
194 AACTTAGACTTTA-CAAAAATGGTGGGAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATGA
* * * * * * * * *
2503655 TGTATCCGAAAGAGAA-AACTTTGATTATAGTACCTTATCTTGAAAAGAATGGGGATTAGTATAA
258 TGTATCCTAATGAGAAGAA--ATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGA
* *
2503719 GTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATTAAAAACGATGGAAGGAAAAGT
321 GTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGT
* * * *** * *
2503784 TTTTCTTGCGATACCAAAGCATCAATTTCATGTATCCTAGGGAAGGGAATATTTTTTCGGC-TC-
386 GTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTTTT-GGCTTCA
* *** ** * * * * * *
2503847 CGATTCTCCTAAAGAA-TGGAGATTGTTATGAGAATCGATGCCTGCCTTATGTAAAGGATAAACT
450 C-AATCTTGAAAAGAACT-GAGACAGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACT
*
2503911 TTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCC-ATACAAAAGAAAATCATCAATATCATT
513 TTGATTTAAAGGAAAATA-GGCAAAGAAAAGA-TTCCAATGCAAAAGAAAATCATCAATATCATT
* ** ** *
2503975 TATCCTAATGTGGAGAATATGTTTACCGTGCCTAATCACAAAATGAAGGAAGATCATTACTAGAA
576 TATCCTAATGAGGAGAATGCGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAA
* * * *
2504040 TCCATGTTTGTTTCTTTTGAA-GCACGAACTTAGGCTTTACAAAAAATGGTGAGAAAAAAGCCTT
641 TCCATGTTTGTCTCATTT-AAGGCACGAACTTAGACTTTA-AAAAAATGGGGAGAAAAAAGCCTT
* * * * * *
2504104 TCTTGCGAAACGAAAGCATCAATATGATGTATCGTAATGAGAAGACAATATTTGTGGTGCCTAAT
704 TCTTGCGAAACGAAAGCATCAATACGATGTATCCTAAAGAGAAAACAATGTTTATGGTGCCTAAT
* * ** **
2504169 CCTAAAAAGAATGGGGATTAGTATGAGTACTCATGTTTGTCTTATTTTTGAGGTAAACTTTGATT
769 -CTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
* * *
2504234 TTATCAAAAACAGTGGAAGGAAAAGTGTTTCTTGCGACCA-CAAAGCATCAATTTCATGTATCCT
833 CTATCAAAAACGGTGGAAGGAAAAGTGTTTCTTGCGA-CATCAAAGCATCAATGTCATGTATCCT
** * * * ** * **
2504298 CTTG-AGGCGAATGTG-TTTGTCTTC-CAATC-TCATAAAGAAAGGATATTG
897 AATGAAGG-GAATGTGTTTTGGCTTCATAATCTTGA-AAAGAACTGAGACAG
* * * * *
2504346 TTACGAGAATTAATGCTTGTCTTATTTAAGGGATGAGCTTTGATTTT-AAGGAAAATAGGGCAAA
1 TTACGAGAATCAATTCTTGTCTTATTTAAGGTATGAACATTG-TTTTAAAGGAAAATA-GGCAAA
* * * * * * *
2504410 GAAAAGATTTCCATGAAAAAGAAAATCATCAATTTCTTTTATCTTAATAAGGGGAATGTGTTTAT
64 GAAAAGATTCCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTAT
* *
2504475 AGTGCCTAATCACAAAAAGAAAGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCACG
129 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCACG
* * *
2504540 AACTTAAACTTTATCAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACGAAAGCATCGATATGA
194 AACTTAGACTTTA-CAAAAATGGTGGGAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATGA
* * * * * * * * *
2504605 TGTATCCGAAAGAGAA-AACTTTGATTATAGTACCTTATCTTGAAAAGAATGGGGATTAGTATAA
258 TGTATCCTAATGAGAAGAA--ATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGA
*
2504669 GTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAAGGAAAAGT
321 GTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGT
* * ** *
2504734 TTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAAGGAAGGGAATGTTTTTTTGGC-TC-
386 GTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATG-TGTTTTGGCTTCA
* *** ** * * * **
2504797 CGATTCTCCTAAAGAA-TGGAGATTGTTATGAGAATCGATGCCTATCTTATTTAACAGATGAACT
450 C-AATCTTGAAAAGAACT-GAGACAGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACT
*
2504861 TTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCAA-GCAAAAGAAAACCATC---ATCATT
513 TTGATTTAAAGGAAAATA-GGCAAAGAAAAGA-TTCCAATGCAAAAGAAAATCATCAATATCATT
* * * *
2504922 TATCCTAATGAGGAGAATGCGTTTATAGTACCTAATCACAAAATGAAGGAAGACCATTATTAGAA
576 TATCCTAATGAGGAGAATGCGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAA
* * **
2504987 TCCATGTTTGTCTCTTTTGAA-GCATGAACTTAGACTTTACAAAAAATGCTGAGAAAAAAGCCTT
641 TCCATGTTTGTCTCATTT-AAGGCACGAACTTAGACTTTA-AAAAAATGGGGAGAAAAAAGCCTT
* * * *
2505051 TCTTGCGAAACAAAAGCATCAATACGATGTATCGTAATGAGAAGACAATGTTTATGGTGCCTAAT
704 TCTTGCGAAACGAAAGCATCAATACGATGTATCCTAAAGAGAAAACAATGTTTATGGTGCCTAAT
* * * *
2505116 CCGGAAAAGAATGGGGATTAGTATGAGTATTTATATTTGTCTTATTTAAGAGACAAATTTTGATT
769 -CTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
* * * *
2505181 -TATCAAAAATGGTGGAAGGAAAAGTTTTTTTTGCAACATCAAAGCATCAATGTCATGTATCCTA
833 CTATCAAAAACGGTGGAAGGAAAAGTGTTTCTTGCGACATCAAAGCATCAATGTCATGTATCCTA
* * * *
2505245 ATGATGGGAATTTGTTTTGGCTTCACAATCTTGAAAAGAACTGAGATAG
898 ATGAAGGGAATGTGTTTTGGCTTCATAATCTTGAAAAGAACTGAGACAG
* * *
2505294 TTACGAGAATCAATTCTTGTCTTTTTTAAGGTATGAACACTGTTTTAAAGGAAAAAAGGCAAAGA
1 TTACGAGAATCAATTCTTGTCTTATTTAAGGTATGAACATTGTTTTAAAGGAAAATAGGCAAAGA
* * *
2505359 AAAGATTCCCATGCAGAAGAAAATCATCAATATCATTTATCCTAGTGAGGCG-A-------ATA-
66 AAAGATTCCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAG
*
2505415 TG--TAATTACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGATGCA--
131 TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAG--GCACG
* * * * *
2505476 AACTTAGACTTTACAAAAAATGGTGAGAAAAATA-CGTTTCTTGCAAAATGAAAGCATCATTATT
194 AACTTAGACTTTAC-AAAAATGGTGGGAAAAA-AGCCTTTCTTGCAAAACGAAAGCATCAATATG
* * * *
2505540 ATGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTTATCCTGAAAAGAATAGGGATTAGTATGA
257 ATGTATCCTAATGAGAAGA-AATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGA
* ** *
2505605 GTATTCATGTTTGTCTTATTTAAGAGAAAAACTTTGATTCTATTGAAAACGGTGGAAAGAAAAGT
321 GTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGT
* * *
2505670 TTTTCTTGCGACACCAAAGCATCAATTTCGTGTATCCTAATAAAGGGAATGTGTTTTGGCTTCAC
386 GTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTTTTGGCTTCAC
* * *
2505735 AATCTTGAAAAGAACTGAGACAATTACGAGAATCAATGCTTGTCTTTTTTAAGGGATGAACTTTG
451 AATCTTGAAAAGAACTGAGACAGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTG
* * * * *
2505800 ATTTAAAGGAAAATAGGGCAAAGAAAAGATTTTC-GTGCAAAGGAAAATCATTAAGATCA--T-T
516 ATTTAAAGGAAAATA-GGCAAAGAAAAGA-TTCCAATGCAAAAGAAAATCATCAATATCATTTAT
* ** * *
2505861 --T-ATGAGGGGAATATGTTTGTAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCT
579 CCTAATGAGGAGAATGCGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
* * * * * *
2505923 AAGTTTGTTTTATTTGAGGCACGAACTTAGACTTTACAAAAAATAGTGAGAAAAAAGCCTTTCTT
644 ATGTTTGTCTCATTTAAGGCACGAACTTAGACTTTA-AAAAAATGGGGAGAAAAAAGCCTTTCTT
* * * * * ** * *
2505988 GCAAAACAAAAGCATCAGTATGATATATTGTAATGAGAAGACAATGTTTATGGTGCCTAATCTAG
708 GCGAAACGAAAGCATCAATACGATGTATCCTAAAGAGAAAACAATGTTTATGGTGCCTAATCT-G
*
2506053 AAAAGAATTGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
772 AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * * * * *
2506118 CAAAAACGATGGAAGGAAAAGTTTTTCTTGCAACACCAAAGCATCAATTTCATGTATCCTAAGGA
837 CAAAAACGGTGGAAGGAAAAGTGTTTCTTGCGACATCAAAGCATCAATGTCATGTATCCTAATGA
* * * * * **
2506183 AGGGAATGTTTTTTGGCTCCGAT--TCTCGTAAAG-AGTGGAGATTG
902 AGGGAATGTGTTTTGGCTTC-ATAATCTTGAAAAGAACT-GAGACAG
** * * * * * *
2506227 TTACGAGAATTGATCCTTGTCTTATTTAGGGGATAAACTTTGATTTAAAGGAAAATAGGGCAAAG
1 TTACGAGAATCAATTCTTGTCTTATTTAAGGTATGAACATTGTTTTAAAGGAAAATA-GGCAAAG
** * *
2506292 AAAAGATTTTCATGCAAATGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATA
65 AAAAGATTCCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* * * * * * *
2506357 GTGCCTAATTACAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCTTTTAAAGCAGGA
130 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCACGA
* * **
2506422 ACTTAGGCTTTACAAAAAATGGTGAGAAAAAAGCCTTTCTTGTGAAACGAAAGCATCAATATGAT
195 ACTTAGACTTTAC-AAAAATGGTGGGAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATGAT
*
2506487 GTATCATAATGAGAAGACAATGTTTATGGTGCCTAATC
259 GTATCCTAATGAGAAGA-AATGTTTATGGTGCCTAATC
2506525 TAGAATAAGA
Statistics
Matches: 8319, Mismatches: 1217, Indels: 907
0.80 0.12 0.09
Matches are distributed among these distances:
932 4 0.00
933 281 0.03
934 133 0.02
935 11 0.00
936 362 0.04
937 5 0.00
938 5 0.00
939 7 0.00
942 9 0.00
943 434 0.05
944 84 0.01
945 476 0.06
946 537 0.06
947 645 0.08
948 281 0.03
949 1416 0.17
950 1768 0.21
951 582 0.07
952 10 0.00
954 9 0.00
955 4 0.00
957 3 0.00
958 3 0.00
959 1 0.00
960 1 0.00
961 2 0.00
962 3 0.00
963 2 0.00
964 2 0.00
965 5 0.00
966 2 0.00
967 1 0.00
968 6 0.00
969 5 0.00
970 2 0.00
971 4 0.00
972 1 0.00
973 1 0.00
974 7 0.00
975 2 0.00
976 7 0.00
978 4 0.00
979 3 0.00
980 2 0.00
981 2 0.00
982 4 0.00
983 8 0.00
985 5 0.00
986 1 0.00
987 5 0.00
988 3 0.00
990 1 0.00
991 4 0.00
992 8 0.00
993 6 0.00
994 2 0.00
995 8 0.00
996 2 0.00
997 2 0.00
998 2 0.00
999 1 0.00
1000 1 0.00
1002 1 0.00
1003 2 0.00
1004 2 0.00
1005 1 0.00
1006 1 0.00
1007 3 0.00
1008 1 0.00
1009 3 0.00
1011 4 0.00
1012 1 0.00
1013 5 0.00
1014 6 0.00
1015 6 0.00
1017 5 0.00
1018 2 0.00
1019 2 0.00
1020 1 0.00
1021 4 0.00
1022 4 0.00
1023 8 0.00
1024 6 0.00
1025 4 0.00
1026 9 0.00
1027 5 0.00
1028 6 0.00
1029 6 0.00
1030 8 0.00
1031 6 0.00
1032 7 0.00
1034 2 0.00
1035 12 0.00
1036 1 0.00
1037 14 0.00
1038 209 0.03
1039 8 0.00
1040 5 0.00
1041 1 0.00
1042 1 0.00
1043 1 0.00
1044 2 0.00
1045 2 0.00
1046 1 0.00
1048 3 0.00
1049 2 0.00
1050 4 0.00
1051 4 0.00
1052 9 0.00
1053 4 0.00
1055 3 0.00
1056 22 0.00
1057 41 0.00
1058 31 0.00
1059 29 0.00
1060 109 0.01
1062 175 0.02
1063 1 0.00
1064 7 0.00
1065 2 0.00
1066 3 0.00
1067 13 0.00
1068 4 0.00
1069 4 0.00
1070 2 0.00
1071 3 0.00
1072 4 0.00
1073 1 0.00
1074 1 0.00
1076 1 0.00
1077 2 0.00
1078 2 0.00
1079 2 0.00
1080 1 0.00
1081 3 0.00
1082 6 0.00
1083 1 0.00
1084 3 0.00
1085 5 0.00
1087 7 0.00
1088 6 0.00
1089 2 0.00
1090 2 0.00
1091 1 0.00
1092 6 0.00
1093 7 0.00
1094 6 0.00
1095 3 0.00
1096 10 0.00
1097 3 0.00
1098 4 0.00
1099 2 0.00
1100 2 0.00
1102 6 0.00
1103 2 0.00
1104 3 0.00
1105 3 0.00
1106 4 0.00
1107 5 0.00
1108 2 0.00
1110 3 0.00
1112 3 0.00
1113 1 0.00
1114 3 0.00
1115 5 0.00
1118 2 0.00
1119 1 0.00
1120 1 0.00
1121 2 0.00
1122 2 0.00
1123 1 0.00
1124 9 0.00
1125 1 0.00
1127 4 0.00
1128 8 0.00
1129 5 0.00
1130 3 0.00
1131 4 0.00
1134 6 0.00
1135 1 0.00
1136 4 0.00
1137 1 0.00
1138 7 0.00
1139 3 0.00
1140 2 0.00
1141 5 0.00
1142 3 0.00
1143 5 0.00
1144 2 0.00
1145 8 0.00
1146 4 0.00
1147 1 0.00
1149 1 0.00
1150 6 0.00
1151 5 0.00
1152 2 0.00
1153 1 0.00
1154 6 0.00
1155 3 0.00
1156 1 0.00
1157 4 0.00
1158 2 0.00
1160 2 0.00
1163 3 0.00
1164 3 0.00
1166 3 0.00
1167 10 0.00
1172 68 0.01
1173 128 0.02
1174 20 0.00
1175 14 0.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (946 bp):
TTACGAGAATCAATTCTTGTCTTATTTAAGGTATGAACATTGTTTTAAAGGAAAATAGGCAAAGA
AAAGATTCCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAG
TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCACGAA
CTTAGACTTTACAAAAATGGTGGGAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATGATGT
ATCCTAATGAGAAGAAATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATT
CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTGTTTC
TTGCGACACCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTTTTGGCTTCACAATCT
TGAAAAGAACTGAGACAGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTA
AAGGAAAATAGGCAAAGAAAAGATTCCAATGCAAAAGAAAATCATCAATATCATTTATCCTAATG
AGGAGAATGCGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG
TCTCATTTAAGGCACGAACTTAGACTTTAAAAAAATGGGGAGAAAAAAGCCTTTCTTGCGAAACG
AAAGCATCAATACGATGTATCCTAAAGAGAAAACAATGTTTATGGTGCCTAATCTGAAAAGAATG
GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGG
TGGAAGGAAAAGTGTTTCTTGCGACATCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGT
GTTTTGGCTTCATAATCTTGAAAAGAACTGAGACAG
Found at i:2501931 original size:587 final size:587
Alignment explanation
Indices: 2500819--2502424 Score: 2666
Period size: 587 Copynumber: 2.7 Consensus size: 587
2500809 AGGATCGATT
* * * * * * *
2500819 CTTGTCTTATCTAAGGTATGAAC-ATCATTTTAAAGGAAAATA-GGCAAAGAATAGA-TTCCAAT
1 CTTGTCTTATTTAAGGGATGAGCTTTGATTTT-AAGGACAATAGGGCAAAGAA-AAATTTCC-AT
* * * *
2500881 GCAAAAGAAAATCATCAATATCATTTATGCTAATGAGGAGAATGGGTTTATAGTGCCTAATCACA
63 GCAAAAGAAAATCATTAATTTCTTTTATCCTAATGAGGAGAATGGGTTTATAGTGCCTAATCACA
2500946 AAATGAATGAAGGTCATTACTAGAATCCACGTTTGTCTCATTTGAGGCATGAACCTAGACTTTAA
128 AAATGAATGAAGGTCATTACTAGAATCCACGTTTGTCTCATTTGAGGCATGAACCTAGACTTTAA
2501011 CAAATTTAGTGGGAAAAAAGCCTTTCTTGCGAAATGAAAGCATCAATACGAGGTATCCTAATGAG
193 CAAATTTAGTGGGAAAAAAGCCTTTCTTGCGAAATGAAAGCATCAATACGAGGTATCCTAATGAG
2501076 AAGAAAATGTTTATGGTGCCTAATCTGAAAAAGAATGGGGATTAGTTTGAGTATTCATGTTTGTT
258 AAGAAAATGTTTATGGTGCCTAATCTGAAAAAGAATGGGGATTAGTTTGAGTATTCATGTTTGTT
2501141 TTATTTAAGAGAAAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTGTTTCTTGTGACGTC
323 TTATTTAAGAGAAAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTGTTTCTTGTGACGTC
2501206 AAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCATAATCTTGAAAAGAAC
388 AAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCATAATCTTGAAAAGAAC
2501271 TGAGCCAGTTGCGAGAGTTGATTCTTGTCTTATTTAAGGTATGAACATTGTTAAAGGAAAATAGG
453 TGAGCCAGTTGCGAGAGTTGATTCTTGTCTTATTTAAGGTATGAACATTGTTAAAGGAAAATAGG
2501336 CAAAGAGAAGATTCCCATGCAAAAAAAAAAATCATCAATATCATTTAAGGGATTGTTATGAGAAG
518 CAAAGAGAAGATTCCCATGCAAAAAAAAAAATCATCAATATCATTTAAGGGATTGTTATGAGAAG
2501401 TAATG
583 TAATG
2501406 CTTGTCTTATTTAAGGGATGAGCTTTGATTTTAAGGACAATAGGGCAAAGAAAAATTTCCATGCA
1 CTTGTCTTATTTAAGGGATGAGCTTTGATTTTAAGGACAATAGGGCAAAGAAAAATTTCCATGCA
2501471 AAAGAAAATCATTAATTTCTTTTATCCTAATGAGGAGAATGGGTTTATAGTGCCTAATCACAAAA
66 AAAGAAAATCATTAATTTCTTTTATCCTAATGAGGAGAATGGGTTTATAGTGCCTAATCACAAAA
2501536 TGAATGAAGGTCATTACTAGAATCCACGTTTGTCTCATTTGAGGCATGAACCTAGACTTTAACAA
131 TGAATGAAGGTCATTACTAGAATCCACGTTTGTCTCATTTGAGGCATGAACCTAGACTTTAACAA
2501601 ATTTAGTGGGAAAAAAGCCTTTCTTGCGAAATGAAAGCATCAATACGAGGTATCCTAATGAGAAG
196 ATTTAGTGGGAAAAAAGCCTTTCTTGCGAAATGAAAGCATCAATACGAGGTATCCTAATGAGAAG
2501666 AAAATGTTTATGGTGCCTAATCTGAAAAAGAATGGGGATTAGTTTGAGTATTCATGTTTGTTTTA
261 AAAATGTTTATGGTGCCTAATCTGAAAAAGAATGGGGATTAGTTTGAGTATTCATGTTTGTTTTA
2501731 TTTAAGAGAAAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTGTTTCTTGTGACGTCAAA
326 TTTAAGAGAAAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTGTTTCTTGTGACGTCAAA
*
2501796 GCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCATAATCTTGAAAAGAATTGA
391 GCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCATAATCTTGAAAAGAACTGA
2501861 GCCAGTTGCGAGAGTTGATTCTTGTCTTATTTAAGGTATGAACATTGTTAAAGGAAAATAGGCAA
456 GCCAGTTGCGAGAGTTGATTCTTGTCTTATTTAAGGTATGAACATTGTTAAAGGAAAATAGGCAA
2501926 AGAGAAGATTCCCATGCAAAAAAAAAAATCATCAATATCATTTAAGGGATTGTTATGAGAAGTAA
521 AGAGAAGATTCCCATGCAAAAAAAAAAATCATCAATATCATTTAAGGGATTGTTATGAGAAGTAA
2501991 TG
586 TG
2501993 CTTGTCTTATTTAAGGGATGAGCTTTGATTTTAAGGACAATAGGGCAAAGAAAAATTTCCATGCA
1 CTTGTCTTATTTAAGGGATGAGCTTTGATTTTAAGGACAATAGGGCAAAGAAAAATTTCCATGCA
* *
2502058 AAAGAAAATCATTAATTTCTTTTATCCTAATGAGGGGAATGTGTTTATAGTGCCTAATCACAAAA
66 AAAGAAAATCATTAATTTCTTTTATCCTAATGAGGAGAATGGGTTTATAGTGCCTAATCACAAAA
* * * * * * * *
2502123 AGAAAGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGACACGAACTTAGACTTTATCAA
131 TGAATGAAGGTCATTACTAGAATCCACGTTTGTCTCATTTGAGGCATGAACCTAGACTTTAACAA
** * * * * * * *
2502188 AAATGGTGGGAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATGATGTATCCAAAAGAGAA-
196 ATTTAGTGGGAAAAAAGCCTTTCTTGCGAAATGAAAGCATCAATACGAGGTATCCTAATGAGAAG
* * * * * * * * **
2502252 AACTACGATTATAGTACCTTATCTTG--AAAGAATGGGGATTAGTATAAGTATTCATGTTTGCCT
261 AA-AATGTTTATGGTGCCTAATC-TGAAAAAGAATGGGGATTAGTTTGAGTATTCATGTTTGTTT
* * * ** **
2502315 TATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAAGGAAAAGTTTTTCTTACGACACCA
324 TATTTAAGAGAAAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTGTTTCTTGTGACGTCA
* * *
2502380 AAGCATCATTTTCATGTATCCTAATGAAGGGAATGTATTTTGGCT
389 AAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCT
2502425 CCGATTCTCC
Statistics
Matches: 963, Mismatches: 51, Indels: 11
0.94 0.05 0.01
Matches are distributed among these distances:
586 135 0.14
587 807 0.84
588 21 0.02
ACGTcount: A:0.37, C:0.13, G:0.20, T:0.31
Consensus pattern (587 bp):
CTTGTCTTATTTAAGGGATGAGCTTTGATTTTAAGGACAATAGGGCAAAGAAAAATTTCCATGCA
AAAGAAAATCATTAATTTCTTTTATCCTAATGAGGAGAATGGGTTTATAGTGCCTAATCACAAAA
TGAATGAAGGTCATTACTAGAATCCACGTTTGTCTCATTTGAGGCATGAACCTAGACTTTAACAA
ATTTAGTGGGAAAAAAGCCTTTCTTGCGAAATGAAAGCATCAATACGAGGTATCCTAATGAGAAG
AAAATGTTTATGGTGCCTAATCTGAAAAAGAATGGGGATTAGTTTGAGTATTCATGTTTGTTTTA
TTTAAGAGAAAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTGTTTCTTGTGACGTCAAA
GCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCATAATCTTGAAAAGAACTGA
GCCAGTTGCGAGAGTTGATTCTTGTCTTATTTAAGGTATGAACATTGTTAAAGGAAAATAGGCAA
AGAGAAGATTCCCATGCAAAAAAAAAAATCATCAATATCATTTAAGGGATTGTTATGAGAAGTAA
TG
Found at i:2503257 original size:158 final size:158
Alignment explanation
Indices: 2502099--2507915 Score: 1345
Period size: 158 Copynumber: 36.9 Consensus size: 158
2502089 GAGGGGAATG
* * * * * *
2502099 TGTTTATAGTGCCTAATCACAAAAAGAAAGAAGATCATTACT-AGAATCCAAGTTTGTCTCATTT
1 TGTTTATAGTGCCTAATCACAAAAAGAATGGAGATTAGTA-TGAGAATTCATGTTTGTCTCATTT
* * * * *
2502163 GAGACACGAACTTAGACTTTATCAAAAATGGTGGGAA-AAAAGCCTTTCTTGCAAAACGAAAGCA
65 AAG-GACGAACTTTGACTTTATCAAAAATGGTGGGAAGAAAAGCGTTTCTTGCAAAACAAAAGCA
* * * * *
2502227 TCAATATGATGTATCCAAAAGAGAAAACTA
129 TCAATATCATGTATCCTAATGAGAAGACAA
* * * * *** * * * * *
2502257 CGATTATAGTACCTTATC-TTGAAAGAATGGGGATTAGTATAAGTATTCATGTTTGCCTTATTTA
1 TGTTTATAGTGCCTAATCACAAAAAGAATGGAGATTAGTATGAGAATTCATGTTTGTCTCATTTA
* * * ** * * * *
2502321 AGAGACAAACTTTGA-TTCTATCAAAAACGAT-GGAAGGAAAAGTTTTTCTTACGACACCAAAGC
66 AG-GACGAACTTTGACTT-TATCAAAAATGGTGGGAA-GAAAAGCGTTTCTTGCAAAACAAAAGC
* * **
2502384 ATCATTTTCATGTATCCTAAT--GAAGGGAA
128 ATCAATATCATGTATCCTAATGAGAAGACAA
* * * * * ** * * * * *
2502413 TGTATTTTGGCT-CCGATTCTCCTAAAGAACGGAGATTATTATGAGAA-TCGAT-TCCTGTGTTA
1 TGT-TTATAG-TGCCTAATCACAAAAAGAATGGAGATTAGTATGAGAATTC-ATGT-TTGTCTCA
** * ** * * *
2502475 TTTAAGGGATAAACTTTGA-TTTA-AAGGAAAATAGG-GCAAAGAAAAG-ATTTCATGCAAAAGA
62 TTTAA-GGACGAACTTTGACTTTATCA--AAAAT-GGTGGGAAGAAAAGCGTTTCTTGCAAAACA
* * * *
2502536 AAATCACCAATATCATTTATCCTAATGAGGAGA-ATA
123 AAAGCATCAATATCATGTATCCTAATGAGAAGACA-A
* * * * * **
2502572 TGTTTACAGTGCCTAATCACTAAATGAA-GGAAGATCA-T-TGCTAGAATCCATGTTTGTCTTTT
1 TGTTTATAGTGCCTAATCACAAAAAGAATGG-AGATTAGTATG--AGAATTCATGTTTGTCTCAT
* * * * * * **
2502634 TTGAAGCACGAACTTAGGCTTTA-CAAAAAATGGTGAGAA-AAAAGCCTTTCTTGCGAAATGAAA
63 TT-AAGGACGAACTTTGACTTTATC-AAAAATGGTGGGAAGAAAAGCGTTTCTTGCAAAACAAAA
* * *
2502697 GGATCAATATGATGTATCGTAATGAGAAGACAA
126 GCATCAATATCATGTATCCTAATGAGAAGACAA
* * * * * *
2502730 TATTTATGGTGCCTAATC-CTGAAAATAATGGGGATTAGTATGAGTATTCATGTTTGTCTTC-TT
1 TGTTTATAGTGCCTAATCAC-AAAAAGAATGGAGATTAGTATGAGAATTCATGTTTGTC-TCATT
* * * * * *
2502793 TATGAGACAAACTTTGATTTTATCAAAAATGGT-GGAAGGAAAAGTGTTTCTTGC-GACCACAAA
64 TAAG-GACGAACTTTGACTTTATCAAAAATGGTGGGAA-GAAAAGCGTTTCTTGCAAAACA-AAA
* *
2502856 GCATCAATTTCATGTATCCTATTGAG--G-CGAA
126 GCATCAATATCATGTATCCTAATGAGAAGAC-AA
* * * * * * * *
2502887 TGTGTT-T-GTGTCCCAATCTCATAAAGAA-AGAGATT-GTTATGGGAATTAATGCTT-TCTTAT
1 TGT-TTATAGTG-CCTAATCACAAAAAGAATGGAGATTAG-TATGAGAATTCATGTTTGTCTCAT
* * * * ** ** * *
2502947 TTATGGGATGAGCTTTGATTTTAAGAAAAATAGG-GCAAAGAAAAG-ATTTCTATGCAAAAGAAA
63 TTA-AGGACGAACTTTGACTTTATCAAAAAT-GGTGGGAAGAAAAGCGTTTCT-TGCAAAACAAA
** * * * ** *
2503010 ATTATCAATTTCTTTTATCCTAATGAGGGGA-ATG
125 AGCATCAATATCATGTATCCTAATGAGAAGACA-A
* * * * * * *
2503044 TGTTTATAGTGCCTAATCACAAAATGAAAGAAGATCATTACT-AGAATCCAAGTTTGTCTCATTT
1 TGTTTATAGTGCCTAATCACAAAAAGAATGGAGATTAGTA-TGAGAATTCATGTTTGTCTCATTT
* *
2503108 AAGGCACGAACTTAGACTTTATCAAAAATGGTGGGAA-AAATGCGTTTCTTGCAAAACAAAAGCA
65 AAGG-ACGAACTTTGACTTTATCAAAAATGGTGGGAAGAAAAGCGTTTCTTGCAAAACAAAAGCA
* *
2503172 TCGATATGATGTATCCTAATGAGAAGACAA
129 TCAATATCATGTATCCTAATGAGAAGACAA
* *
2503202 TGTTTATAGTGCCTAATC-CGAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCAT-ATT
1 TGTTTATAGTGCCTAATCAC-AAAAAGAATGGAGATTAGTATGAGAATTCATGTTTGTC-TCATT
* ** * * ** *
2503265 TAAGAGACAAACTTTGA-TTTCATCAAAAACAGT-TGAAGGAAAAGTGTTTCTTG-TGACCACAA
64 TAAG-GACGAACTTTGACTTT-ATCAAAAATGGTGGGAA-GAAAAGCGTTTCTTGCAAAACA-AA
* * * * **
2503327 AGCATCAATTTCATCTGTCCTATTGAG--GGGAA
125 AGCATCAATATCATGTATCCTAATGAGAAGACAA
* * * * * * * * *
2503359 TGTGTT-T-GTCTCCCAATCTCATAGAGAAAGGAGATT-GTTATGAGAATTAATGCTTGTCTTAT
1 TGT-TTATAGT-GCCTAATCACAAAAAGAATGGAGATTAG-TATGAGAATTCATGTTTGTCTCAT
* * * *** ** * * *
2503421 TTAAGGGATGAGCTTTGATTTTAAGGAAAATAGG-GCAAAGAAAAG-ATTTCCATGCAAAAGAAA
63 TTAA-GGACGAACTTTGACTTTATCAAAAAT-GGTGGGAAGAAAAGCGTTT-CTTGCAAAACAAA
* * * * ** *
2503484 ATCATCAATTTCTTTTATCCTAATGAGGGGA-ATG
125 AGCATCAATATCATGTATCCTAATGAGAAGACA-A
*** * * * *
2503518 TGTTTATAGTGCCTAATCACAAAAAGAAAAAAGATCATTACT-AGAATCCAAGTTTGTCTCATTT
1 TGTTTATAGTGCCTAATCACAAAAAGAATGGAGATTAGTA-TGAGAATTCATGTTTGTCTCATTT
* * * * * *
2503582 GAGGCATGAACTTAGACTTTATCAAAAATGGTGAGAA-AAAAGCCTTTCTTGCAAAACGAAAGCA
65 AAGG-ACGAACTTTGACTTTATCAAAAATGGTGGGAAGAAAAGCGTTTCTTGCAAAACAAAAGCA
* * * * **
2503646 TCAATATGATGTATCCGAAAGAGAAAACTT
129 TCAATATCATGTATCCTAATGAGAAGACAA
* * * *** * * * *
2503676 TGATTATAGTACCTTATCTTGAAAAGAATGGGGATTAGTATAAGTATTCATGTTTGTCTTATTTA
1 TGTTTATAGTGCCTAATCACAAAAAGAATGGAGATTAGTATGAGAATTCATGTTTGTCTCATTTA
* * * * ** * * *
2503741 AGAGACAAACTTTGA-TTCTATTAAAAACGAT-GGAAGGAAAAGTTTTTCTTGCGATACCAAAGC
66 AG-GACGAACTTTGACTT-TATCAAAAATGGTGGGAA-GAAAAGCGTTTCTTGCAAAACAAAAGC
* * **
2503804 ATCAATTTCATGTATCCT-A-GGGAAGGGAA
128 ATCAATATCATGTATCCTAATGAGAAGACAA
* * * * * * ** ** * *
2503833 TATTTTTTCG-GCTCCGATTCTCCTAAAGAATGGAGATT-GTTATGAGAA-TCGATGCCTGCCTT
1 T-GTTTATAGTG--CCTAATCACAAAAAGAATGGAGATTAG-TATGAGAATTC-ATGTTTGTCTC
* ** * ** * * *
2503895 ATGTAAAGGATAAACTTTGA-TTTA-AAGGAAAATAGG-GCAAAGAAAAG-ATTTCCATACAAAA
61 AT-TTAAGGACGAACTTTGACTTTATCA--AAAAT-GGTGGGAAGAAAAGCGTTT-CTTGCAAAA
* * * * *
2503956 GAAAATCATCAATATCATTTATCCTAATGTGGAGA-ATA
121 CAAAAGCATCAATATCATGTATCCTAATGAGAAGACA-A
** * * * * * *
2503994 TGTTTACCGTGCCTAATCACAAAATGAA-GGAAGATCATTACT-AGAATCCATGTTTGTTTCTTT
1 TGTTTATAGTGCCTAATCACAAAAAGAATGG-AGATTAGTA-TGAGAATTCATGTTTGTCTCATT
* * * * * * *
2504057 TGAAGCACGAACTTAGGCTTTA-CAAAAAATGGTGAGAA-AAAAGCCTTTCTTGCGAAACGAAAG
64 T-AAGGACGAACTTTGACTTTATC-AAAAATGGTGGGAAGAAAAGCGTTTCTTGCAAAACAAAAG
* *
2504120 CATCAATATGATGTATCGTAATGAGAAGACAA
127 CATCAATATCATGTATCCTAATGAGAAGACAA
* * * * * * *
2504152 TATTTGTGGTGCCTAATC-CTAAAAAGAATGGGGATTAGTATGAGTACTCATGTTTGTCTTATTT
1 TGTTTATAGTGCCTAATCAC-AAAAAGAATGGAGATTAGTATGAGAATTCATGTTTGTCTCA--T
* * ** * * *
2504216 TTGAGGTA--AACTTTGATTTTATCAAAAACAGT-GGAAGGAAAAGTGTTTCTTGC-GACCACAA
63 TTAAGG-ACGAACTTTGACTTTATCAAAAATGGTGGGAA-GAAAAGCGTTTCTTGCAAAACA-AA
* ** ** *
2504277 AGCATCAATTTCATGTATCCTCTTGAGGCGA-ATG
125 AGCATCAATATCATGTATCCTAATGAGAAGACA-A
* * * * * * * * * * *
2504311 TGTTTGT-CTTCC-AATCTCATAAAGAAAGGATATT-GTTACGAGAATTAATGCTTGTCTTATTT
1 TGTTTATAGTGCCTAATCACAAAAAGAATGGAGATTAG-TATGAGAATTCATGTTTGTCTCATTT
* * * *** ** * * * * *
2504373 AAGGGATGAGCTTTGATTTTAAGGAAAATAGG-GCAAAGAAAAG-ATTTCCATGAAAAAGAAAAT
65 AA-GGACGAACTTTGACTTTATCAAAAAT-GGTGGGAAGAAAAGCGTTT-CTTGCAAAACAAAAG
* * * * * ** *
2504436 CATCAATTTCTTTTATCTTAATAAGGGGA-ATG
127 CATCAATATCATGTATCCTAATGAGAAGACA-A
* * * * * *
2504468 TGTTTATAGTGCCTAATCACAAAAAGAAAGAAGATCATTACT-AGAATCCAAGTTTGTCTCATTT
1 TGTTTATAGTGCCTAATCACAAAAAGAATGGAGATTAGTA-TGAGAATTCATGTTTGTCTCATTT
* ** * * *
2504532 GAGGCACGAACTTAAACTTTATCAAAATTGGTGGGAA-AAAAGCCTTTCTTGCAAAACGAAAGCA
65 AAGG-ACGAACTTTGACTTTATCAAAAATGGTGGGAAGAAAAGCGTTTCTTGCAAAACAAAAGCA
* * * * * **
2504596 TCGATATGATGTATCCGAAAGAGAAAACTT
129 TCAATATCATGTATCCTAATGAGAAGACAA
* * * *** * * * *
2504626 TGATTATAGTACCTTATCTTGAAAAGAATGGGGATTAGTATAAGTATTCATGTTTGTCTTATTTA
1 TGTTTATAGTGCCTAATCACAAAAAGAATGGAGATTAGTATGAGAATTCATGTTTGTCTCATTTA
* * * ** * * *
2504691 AGAGACAAACTTTGA-TTCTATCAAAAACGAT-GGAAGGAAAAGTTTTTCTTGCGACACCAAAGC
66 AG-GACGAACTTTGACTT-TATCAAAAATGGTGGGAA-GAAAAGCGTTTCTTGCAAAACAAAAGC
* **
2504754 ATCAATTTCATGTATCCTAA-G-GAAGGGAA
128 ATCAATATCATGTATCCTAATGAGAAGACAA
** * * * ** ** * *
2504783 TGTTT-TTTTGGCTCCGATTCTCCTAAAGAATGGAGATT-GTTATGAGAA-TCGATGCCTATCTT
1 TGTTTATAGT-G--CCTAATCACAAAAAGAATGGAGATTAG-TATGAGAATTC-ATGTTTGTCTC
* * * ** * **
2504845 ATTTAACAGATGAACTTTGA-TTTA-AAGGAAAATAGG-GCAAAGAAAAG-ATTTCCAAGCAAAA
61 ATTTAA-GGACGAACTTTGACTTTATCA--AAAAT-GGTGGGAAGAAAAGCGTTT-CTTGCAAAA
* * * *
2504906 GAAAACCATC---ATCATTTATCCTAATGAG--GAGAA
121 CAAAAGCATCAATATCATGTATCCTAATGAGAAGACAA
* * ** * * * *
2504939 TGCGTTTATAGTACCTAATCACAAAATGAA-GGAAGACCATTATTAGAATCCATGTTTGTCTCTT
1 T--GTTTATAGTGCCTAATCACAAAAAGAATGG-AGATTAGTATGAGAATTCATGTTTGTCTCAT
* * * * * * *
2505003 TTGAAGCATGAACTTAGACTTTA-CAAAAAATGCTGAGAA-AAAAGCCTTTCTTGCGAAACAAAA
63 TT-AAGGACGAACTTTGACTTTATC-AAAAATGGTGGGAAGAAAAGCGTTTCTTGCAAAACAAAA
*
2505066 GCATCAATA-CGATGTATCGTAATGAGAAGACAA
126 GCATCAATATC-ATGTATCCTAATGAGAAGACAA
* * * * * * *
2505099 TGTTTATGGTGCCTAATC-CGGAAAAGAATGGGGATTAGTATGAGTATTTATATTTGTCTTATTT
1 TGTTTATAGTGCCTAATCAC-AAAAAGAATGGAGATTAGTATGAGAATTCATGTTTGTCTCATTT
* * ** * *
2505163 AAGAGACAAATTTTGA-TTTATCAAAAATGGT-GGAAGGAAAAGTTTTTTTTGCAACATC-AAAG
65 AAG-GACGAACTTTGACTTTATCAAAAATGGTGGGAA-GAAAAGCGTTTCTTGCAA-AACAAAAG
* * *
2505225 CATCAATGTCATGTATCCTAATGATG-GGA-ATT
127 CATCAATATCATGTATCCTAATGA-GAAGACA-A
* * *** *
2505257 TGTTT-TGGCTTCAC-AATCTTGAAAAGAACT-GAGA-TAGTTACGAGAA-TCAAT-TCTTGTCT
1 TGTTTATAG-TGC-CTAATCACAAAAAGAA-TGGAGATTAG-TATGAGAATTC-ATGT-TTGTCT
** * ** * * ** ** * * * *
2505316 TTTTTAAGGTATGAACACTG-TTTTA-AAGGAAAAAAG-GCAAAGAAAAG-ATTCCCATGCAGAA
60 CATTTAAGG-ACGAACTTTGACTTTATCA--AAAATGGTGGGAAGAAAAGCGTT-TCTTGCAAAA
* * * *
2505377 GAAAATCATCAATATCATTTATCCTAGTGAG--G-C--
121 CAAAAGCATCAATATCATGTATCCTAATGAGAAGACAA
* * * * * * * *
2505410 -G--AATA-TG--TAATTACAAAATGAATGAAGATCATTACT-AGAATCCAAGTTTGTCTCATTT
1 TGTTTATAGTGCCTAATCACAAAAAGAATGGAGATTAGTA-TGAGAATTCATGTTTGTCTCATTT
* * * * **
2505468 GA-GATGCAAACTTAGACTTTA-CAAAAAATGGTGAGAA-AAATA-CGTTTCTTGCAAAATGAAA
65 AAGGA--CGAACTTTGACTTTATC-AAAAATGGTGGGAAGAAA-AGCGTTTCTTGCAAAACAAAA
* * * *
2505529 GCATCATTATTATGTATCCTAAAGAGAAGACTA
126 GCATCAATATCATGTATCCTAATGAGAAGACAA
* * * * *
2505562 TGTTTATGGTGCCTTATC-CTGAAAAGAATAGG-GATTAGTATGAGTATTCATGTTTGTCTTATT
1 TGTTTATAGTGCCTAATCAC-AAAAAGAAT-GGAGATTAGTATGAGAATTCATGTTTGTCTCATT
** ** * * ** * * *
2505625 TAAGAGAAAAACTTTGA-TTCTATTGAAAACGGTGGAAAGAAAAGTTTTTCTTGCGACACCAAAG
64 TAAG-GACGAACTTTGACTT-TATCAAAAATGGTGGGAAGAAAAGCGTTTCTTGCAAAACAAAAG
* * **
2505689 CATCAATTTCGTGTATCCTAAT-A-AAGGGAA
127 CATCAATATCATGTATCCTAATGAGAAGACAA
* * * *** ** * * * *
2505719 TGTGTTTTGGCTTCAC-AATCTTGAAAAGAACT-GAGACAATTACGAGAA-TCAATGCTTGTCTT
1 TGT-TTATAG-TGC-CTAATCACAAAAAGAA-TGGAGATTAGTATGAGAATTC-ATGTTTGTCTC
* * * ** ** * **
2505781 TTTTAAGGGATGAACTTTGA-TTTA-AAGGAAAATAGG-GCAAAGAAAAGATTTTCGTGCAAAGG
61 ATTTAA-GGACGAACTTTGACTTTATCA--AAAAT-GGTGGGAAGAAAAGCGTTTCTTGCAAAAC
* * * **
2505843 AAAATCATTAAGATCA--T-T--T-ATGAGGGGA-ATA
122 AAAAGCATCAATATCATGTATCCTAATGAGAAGACA-A
* * * * * * * *
2505874 TGTTTGTAGTGCCTAATCACAAAATGAATGAAGATCATTACT-AGAA-TCTAAGTTTGTTTTATT
1 TGTTTATAGTGCCTAATCACAAAAAGAATGGAGATTAGTA-TGAGAATTC-ATGTTTGTCTCATT
* * * * *
2505937 TGAGGCACGAACTTAGACTTTA-CAAAAAATAGTGAGAA-AAAAGCCTTTCTTGCAAAACAAAAG
64 TAAGG-ACGAACTTTGACTTTATC-AAAAATGGTGGGAAGAAAAGCGTTTCTTGCAAAACAAAAG
* * * **
2506000 CATCAGTATGATATATTGTAATGAGAAGACAA
127 CATCAATATCATGTATCCTAATGAGAAGACAA
* * * *
2506032 TGTTTATGGTGCCTAATCTA-GAAAAGAATTGG-GATTAGTATGAGTATTCATGTTTGTCTTATT
1 TGTTTATAGTGCCTAATC-ACAAAAAGAA-TGGAGATTAGTATGAGAATTCATGTTTGTCTCATT
* * * ** * *
2506095 TAAGAGACAAACTTTGA-TTCTATCAAAAACGAT-GGAAGGAAAAGTTTTTCTTGCAACACCAAA
64 TAAG-GACGAACTTTGACTT-TATCAAAAATGGTGGGAA-GAAAAGCGTTTCTTGCAAAACAAAA
* **
2506158 GCATCAATTTCATGTATCCTAA-G-GAAGGGAA
126 GCATCAATATCATGTATCCTAATGAGAAGACAA
* * * * * ** * * * ** *
2506189 TGTTTTTTG-GCTCCGATTCTCGTAAAGAGTGGAGATT-GTTACGAGAATTGATCCTTGTCTTAT
1 TGTTTATAGTG--CCTAATCACAAAAAGAATGGAGATTAG-TATGAGAATTCATGTTTGTCTCAT
* ** * ** ** * **
2506252 TTAGGGGATAAACTTTGA-TTTA-AAGGAAAATAGG-GCAAAGAAAAGATTTTCATGCAAATGAA
63 TTA-AGGACGAACTTTGACTTTATCA--AAAAT-GGTGGGAAGAAAAGCGTTTCTTGCAAAACAA
* * *
2506314 AATCATCAATATCATTTATCCTAATGAGGAGA-ATA
124 AAGCATCAATATCATGTATCCTAATGAGAAGACA-A
* * * * * * * *
2506349 TGTTTATAGTGCCTAATTACAAAATGAAAGAAGATCATTACT-AGAATCCATGTTTGTCTCTTTT
1 TGTTTATAGTGCCTAATCACAAAAAGAATGGAGATTAGTA-TGAGAATTCATGTTTGTCTCATTT
* * * * * * ** *
2506413 AAAGCAGGAACTTAGGCTTTA-CAAAAAATGGTGAGAA-AAAAGCCTTTCTTGTGAAACGAAAGC
65 -AAGGACGAACTTTGACTTTATC-AAAAATGGTGGGAAGAAAAGCGTTTCTTGCAAAACAAAAGC
* *
2506476 ATCAATATGATGTATCATAATGAGAAGACAA
128 ATCAATATCATGTATCCTAATGAGAAGACAA
* * * * ** *
2506507 TGTTTATGGTGCCTAAT--C---TAGAAT-AAGA-TAGTTACGAGAA-TCGATACTTGTCTTATT
1 TGTTTATAGTGCCTAATCACAAAAAGAATGGAGATTAG-TATGAGAATTC-ATGTTTGTCTCATT
* * * * ** * * * *
2506564 TAAGGTA-TAACATCG--TTT-TAAAGGAACAT--CAGCAAGAAAAG-ATTCCTATGCAAAAGAA
64 TAAGG-ACGAACTTTGACTTTATCAA--AA-ATGGTGGGAAGAAAAGCGTTTCT-TGCAAAACAA
* * * **
2506622 AATCATCAATATCATTTATCCTAGTGAGGCGA-ATA
124 AAGCATCAATATCATGTATCCTAATGAGAAGACA-A
* * * ** * ** * * *
2506657 TGTTTATAGTACCTAATCACAAAATGAATGAAGACCATTACAAGAATCCAAGTTTGTCTCATTTG
1 TGTTTATAGTGCCTAATCACAAAAAGAATGGAGATTAGTATGAGAATTCATGTTTGTCTCATTTA
* * * *
2506722 A-GATGCGAACTTAGACTTTA-CAAAAAATGGTGGGAA-AAATGCGTTTCTTGCGAAACGAAAGC
66 AGGA--CGAACTTTGACTTTATC-AAAAATGGTGGGAAGAAAAGCGTTTCTTGCAAAACAAAAGC
* * * *
2506784 ATCATTATTATGTATCCTAAAGAGAAGACTA
128 ATCAATATCATGTATCCTAATGAGAAGACAA
* * *** * * * *
2506815 TGTTTATGGTGCCTTATCTTGAAAAGAAAGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTA
1 TGTTTATAGTGCCTAATCACAAAAAGAATGGAGATTAGTATGAGAATTCATGTTTGTCTCATTTA
** * ** * * * *
2506880 AGAGAAAAACTTTGA-TTCTATCAAAAATGGTGGAAAGAAAAGTTTTTCTGGCGACACCAAAGCA
66 AG-GACGAACTTTGACTT-TATCAAAAATGGTGGGAAGAAAAGCGTTTCTTGCAAAACAAAAGCA
* * * ** ***
2506944 TCAATTTCGTGTATCCTAATAAGCGGATTG
129 TCAATATCATGTATCCTAATGAGAAGACAA
* * *** * ** * * * * **
2506974 TGTTT-TGGCTTCAC-AATCTTGAAAAGAATTGAGACAATTACGAGAATTGATGCTTGTCTTTTT
1 TGTTTATAG-TGC-CTAATCACAAAAAGAATGGAGATTAGTATGAGAATTCATGTTTGTCTCATT
* * ** ** * *
2507037 TAAGGGATGAACTTTGA-TTTA-AAGGAAAATAGG-GCAAAGAAAAGATTTTCATGCAAAAGAAA
64 TAA-GGACGAACTTTGACTTTATCA--AAAAT-GGTGGGAAGAAAAGCGTTTCTTGCAAAACAAA
* * * * *
2507099 ATCATCACTATTATTTATCCTAATGAG--GAGAA
125 AGCATCAATATCATGTATCCTAATGAGAAGACAA
* ** * * *
2507131 TGCATTTATAGTGCCTAATCACAAAATGAATAAAAATCA-T-TGCTAGAA-TCTACGTTTGTCTC
1 TG--TTTATAGTGCCTAATCACAAAAAGAATGGAGATTAGTATG--AGAATTC-ATGTTTGTCTC
* * * * * * * **
2507193 ATTTGAGACACGAACTTAGACTTTA--AAAAATTTGATGGGAA-AAAAACTTTTCTAGCAAAATG
61 ATTTAAG-GACGAACTTTGACTTTATCAAAAA--TGGTGGGAAGAAAAGCGTTTCTTGCAAAACA
* ** *
2507255 AAAGCATCAATA-CTACGTATCCTAAAAAGAAGATAA
123 AAAGCATCAATATC-ATGTATCCTAATGAGAAGACAA
* * * *
2507291 TGTTTAT-GTTGCCTTATC-CTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCAT-AT
1 TGTTTATAG-TGCCTAATCAC-AAAAAGAATGGAGATTAGTATGAGAATTCATGTTTGTC-TCAT
* * * * * ** *
2507353 TTAAGAGACAAACTTTGATTTTATCAAAAACGGT-GGAAGGAAAAGTGTTTCTTGCGACCCCAAA
63 TTAAG-GACGAACTTTGACTTTATCAAAAATGGTGGGAA-GAAAAGCGTTTCTTGCAAAACAAAA
* * **
2507417 GCATCAATTTCATGTATCCT-AT-TGAAGGGAA
126 GCATCAATATCATGTATCCTAATGAGAAGACAA
* * * * ** * * * *
2507448 TGTGTT-T-GTCTCCCAATCTCATAAAGAAAAGAGATT-GTTACGAGAATTAATGCTTGTCTTAT
1 TGT-TTATAGT-GCCTAATCACAAAAAGAATGGAGATTAG-TATGAGAATTCATGTTTGTCTCAT
* *** ** * * * *
2507510 TTAAGGAATGAACTTTGA-TTTCAAGGAAAATAGG-GCAAAGAAAAG-ATTTCCATGCAGAAGAA
63 TTAAGG-ACGAACTTTGACTTT-ATCAAAAAT-GGTGGGAAGAAAAGCGTTT-CTTGCAAAACAA
* * * * **
2507572 AATCATCAATTTCTTTTATCCTAATGAG--GGGAA
124 AAGCATCAATATCATGTATCCTAATGAGAAGACAA
* * * * * * * *
2507605 TGCGCTTATAGTGCCTAATCACAAAATGAAAGAAGATCATTAAT-AGAATCCAAGTTTGTCTCAT
1 T--GTTTATAGTGCCTAATCACAAAAAGAATGGAGATTAGT-ATGAGAATTCATGTTTGTCTCAT
* * * * * * * *
2507669 TTGAGGCATGAACTTAGACTTGATCGAAAATGGTTGGAA-AAAAGCCTTTCTTGCAAAACGAAAG
63 TTAAGG-ACGAACTTTGACTTTATCAAAAATGGTGGGAAGAAAAGCGTTTCTTGCAAAACAAAAG
* *
2507733 CATCAATTTGATGTATCCTAATGAGAAGACAA
127 CATCAATATCATGTATCCTAATGAGAAGACAA
* ** * * *
2507765 TGTTTATAGTGCATAATCTGAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTA
1 TGTTTATAGTGCCTAATCACAAAAAGAATGGAGATTAGTATGAGAATTCATGTTTGTCTCATTT-
* * * * ** * * *
2507830 AAAGACAAACTTTGA-TTCTATCAAAAACGAT-GGAAGGAAAAGTATTTCTTACGACATC-AAAG
65 AAGGACGAACTTTGACTT-TATCAAAAATGGTGGGAA-GAAAAGCGTTTCTTGC-AAAACAAAAG
*
2507892 CATCAATGTCATGTATCCTAATGA
127 CATCAATATCATGTATCCTAATGA
2507916 AGTAAATGTG
Statistics
Matches: 4005, Mismatches: 1254, Indels: 799
0.66 0.21 0.13
Matches are distributed among these distances:
145 1 0.00
146 2 0.00
147 71 0.02
148 15 0.00
149 13 0.00
150 55 0.01
151 13 0.00
152 55 0.01
153 60 0.01
154 19 0.00
155 101 0.03
156 174 0.04
157 588 0.15
158 1560 0.39
159 1167 0.29
160 101 0.03
161 10 0.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (158 bp):
TGTTTATAGTGCCTAATCACAAAAAGAATGGAGATTAGTATGAGAATTCATGTTTGTCTCATTTA
AGGACGAACTTTGACTTTATCAAAAATGGTGGGAAGAAAAGCGTTTCTTGCAAAACAAAAGCATC
AATATCATGTATCCTAATGAGAAGACAA
Found at i:2503612 original size:474 final size:472
Alignment explanation
Indices: 2501969--2506524 Score: 5683
Period size: 474 Copynumber: 9.7 Consensus size: 472
2501959 AATATCATTT
* * *
2501969 AAGG-GATTGTTATGAGAAGT-AATGCTTGTCTTATTTAAGGGATGAGCTTTGATTTTAAGGACA
1 AAGGAGATTGTTATGAGAA-TCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAA
* * *
2502032 ATAGGGCAAAGAAAA-ATTTCCATGCAAAAGAAAATCATTAATTTCTTTTATCCTAATGAGGGGA
65 ATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGGGA
*
2502096 ATGTGTTTATAGTGCCTAATCACAAAAAGAAAGAAGATCATTACTAGAATCCAAGTTTGTCTCAT
130 ATGTGTTTATAGTGCCTAATCACAAAATGAAAGAAGATCATTACTAGAATCCAAGTTTGTCTCAT
* *
2502161 TTGAGACACGAACTTAGACTTTATC-AAAAATGGTGGGAAAAAAGCCTTTCTTGCAAAACGAAAG
195 TTGAGGCACGAACTTAGACTTTA-CAAAAAATGGTGAGAAAAAAGCCTTTCTTGCAAAACGAAAG
* * * * * * * * * *
2502225 CATCAATATGATGTATCCAAAAGAGAAAACTACGATTATAGTACCTTATCTTG-AAAGAATGGGG
259 CATCAATATGATGTATCCTAATGAGAAGACAATGTTTATGGTGCCTAATC-CGAAAAGAATGGGG
* *
2502289 ATTAGTATAAGTATTCATGTTTGCCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGG
323 ATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACG-TGG
* * *
2502354 AAGGAAAAGTTTTTCTTACGACACCAAAGCATCATTTTCATGTATCCTAATGAAGGGAATGTATT
387 AAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGT-GT
* * *
2502419 TTGGCTCCGATTCTCCTAAAGA
451 TTGGCTCCCAATCTCATAAAGA
* * * * * * *
2502441 ACGGAGATTATTATGAGAATCGATTCCTGTGTTATTTAAGGGATAAACTTTGATTTAAAGGAAAA
1 AAGGAGATTGTTATGAGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAA
* *
2502506 TAGGGCAAAGAAAAGATTT-CATGCAAAAGAAAATCACCAATATCATTTATCCTAATGAGGAGAA
66 TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGGGAA
* * * * * * **
2502570 TATGTTTACAGTGCCTAATCACTAAATGAAGGAAGATCATTGCTAGAATCCATGTTTGTCTTTTT
131 TGTGTTTATAGTGCCTAATCACAAAATGAAAGAAGATCATTACTAGAATCCAAGTTTGTCTCATT
* * * * *
2502635 TGAAGCACGAACTTAGGCTTTACAAAAAATGGTGAGAAAAAAGCCTTTCTTGCGAAATGAAAGGA
196 TGAGGCACGAACTTAGACTTTACAAAAAATGGTGAGAAAAAAGCCTTTCTTGCAAAACGAAAGCA
* * *
2502700 TCAATATGATGTATCGTAATGAGAAGACAATATTTATGGTGCCTAATCCTGAAAATAATGGGGAT
261 TCAATATGATGTATCCTAATGAGAAGACAATGTTTATGGTGCCTAATCC-GAAAAGAATGGGGAT
* * * *
2502765 TAGTATGAGTATTCATGTTTGTCTTCTTTATGAGACAAACTTTGATTTTATCAAAAATGGTGGAA
325 TAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA-CGTGGAA
* *
2502830 GGAAAAGTGTTTCTTGCGAC-CACAAAGCATCAATTTCATGTATCCTATTG-AGGCGAATGTGTT
389 GGAAAAGTTTTTCTTGCGACAC-CAAAGCATCAATTTCATGTATCCTAATGAAGG-GAATGTGTT
2502893 TGTG-TCCCAATCTCATAAAGA
452 TG-GCTCCCAATCTCATAAAGA
* * * * * *
2502914 AA-GAGATTGTTATGGGAATTAATGCTT-TCTTATTTATGGGATGAGCTTTGATTTTAAGAAAAA
1 AAGGAGATTGTTATGAGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAA
* * * *
2502977 TAGGGCAAAGAAAAGATTTCTATGCAAAAGAAAATTATCAATTTCTTTTATCCTAATGAGGGGAA
66 TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGGGAA
2503042 TGTGTTTATAGTGCCTAATCACAAAATGAAAGAAGATCATTACTAGAATCCAAGTTTGTCTCATT
131 TGTGTTTATAGTGCCTAATCACAAAATGAAAGAAGATCATTACTAGAATCCAAGTTTGTCTCATT
* * * * *
2503107 TAAGGCACGAACTTAGACTTTATC-AAAAATGGTGGGAAAAATGCGTTTCTTGCAAAACAAAAGC
196 TGAGGCACGAACTTAGACTTTA-CAAAAAATGGTGAGAAAAAAGCCTTTCTTGCAAAACGAAAGC
* *
2503171 ATCGATATGATGTATCCTAATGAGAAGACAATGTTTATAGTGCCTAATCCGAAAAAGAATGGGGA
260 ATCAATATGATGTATCCTAATGAGAAGACAATGTTTATGGTGCCTAATCCG-AAAAGAATGGGGA
* *
2503236 TTAGTATGAGTATTCATGTTTGTCATATTTAAGAGACAAACTTTGATT-TCATCAAAAACAGTTG
324 TTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT-ATCAAAAAC-GTGG
* * * * * *
2503300 AAGGAAAAGTGTTTCTTGTGAC-CACAAAGCATCAATTTCATCTGTCCTATTGAGGGGAATGTGT
387 AAGGAAAAGTTTTTCTTGCGACAC-CAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGTGT
* *
2503364 TTGTCTCCCAATCTCATAGAGA
451 TTGGCTCCCAATCTCATAAAGA
* * *
2503386 AAGGAGATTGTTATGAGAATTAATGCTTGTCTTATTTAAGGGATGAGCTTTGATTTTAAGGAAAA
1 AAGGAGATTGTTATGAGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAA
* *
2503451 TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATTTCTTTTATCCTAATGAGGGGAA
66 TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGGGAA
* *
2503516 TGTGTTTATAGTGCCTAATCACAAAAAGAAAAAAGATCATTACTAGAATCCAAGTTTGTCTCATT
131 TGTGTTTATAGTGCCTAATCACAAAATGAAAGAAGATCATTACTAGAATCCAAGTTTGTCTCATT
*
2503581 TGAGGCATGAACTTAGACTTTATC-AAAAATGGTGAGAAAAAAGCCTTTCTTGCAAAACGAAAGC
196 TGAGGCACGAACTTAGACTTTA-CAAAAAATGGTGAGAAAAAAGCCTTTCTTGCAAAACGAAAGC
* * * ** * * * * *
2503645 ATCAATATGATGTATCCGAAAGAGAAAACTTTGATTATAGTACCTTATCTTGAAAAGAATGGGGA
260 ATCAATATGATGTATCCTAATGAGAAGACAATGTTTATGGTGCCTAATC-CGAAAAGAATGGGGA
* *
2503710 TTAGTATAAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATTAAAAACGATGGA
324 TTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACG-TGGA
* ** * *
2503775 AGGAAAAGTTTTTCTTGCGATACCAAAGCATCAATTTCATGTATCCTAGGGAAGGGAATATTTTT
388 AGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAATGAAGGGAAT-GTGTT
* * *
2503840 TCGGCTCCGATTCTCCTAAAGA
452 T-GGCTCCCAATCTCATAAAGA
* * * * * * *
2503862 ATGGAGATTGTTATGAGAATCGATGCCTGCCTTATGTAAAGGATAAACTTTGATTTAAAGGAAAA
1 AAGGAGATTGTTATGAGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAA
* * *
2503927 TAGGGCAAAGAAAAGATTTCCATACAAAAGAAAATCATCAATATCATTTATCCTAATGTGGAGAA
66 TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGGGAA
* ** * * * *
2503992 TATGTTTACCGTGCCTAATCACAAAATGAAGGAAGATCATTACTAGAATCCATGTTTGTTTCTTT
131 TGTGTTTATAGTGCCTAATCACAAAATGAAAGAAGATCATTACTAGAATCCAAGTTTGTCTCATT
* * *
2504057 TGAAGCACGAACTTAGGCTTTACAAAAAATGGTGAGAAAAAAGCCTTTCTTGCGAAACGAAAGCA
196 TGAGGCACGAACTTAGACTTTACAAAAAATGGTGAGAAAAAAGCCTTTCTTGCAAAACGAAAGCA
* * * *
2504122 TCAATATGATGTATCGTAATGAGAAGACAATATTTGTGGTGCCTAATCCTAAAAAGAATGGGGAT
261 TCAATATGATGTATCCTAATGAGAAGACAATGTTTATGGTGCCTAATCC-GAAAAGAATGGGGAT
* ** ** *
2504187 TAGTATGAGTACTCATGTTTGTCTTATTTTTGAGGTAAACTTTGATTTTATCAAAAACAGTGGAA
325 TAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAC-GTGGAA
* **
2504252 GGAAAAGTGTTTCTTGCGAC-CACAAAGCATCAATTTCATGTATCCTCTTG-AGGCGAATGTGTT
389 GGAAAAGTTTTTCTTGCGACAC-CAAAGCATCAATTTCATGTATCCTAATGAAGG-GAATGTGTT
* *
2504315 TGTCTTCCAATCTCATAAAGA
452 TGGCTCCCAATCTCATAAAGA
* * * * *
2504336 AAGGATATTGTTACGAGAATTAATGCTTGTCTTATTTAAGGGATGAGCTTTGATTTTAAGGAAAA
1 AAGGAGATTGTTATGAGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAA
* * * * *
2504401 TAGGGCAAAGAAAAGATTTCCATGAAAAAGAAAATCATCAATTTCTTTTATCTTAATAAGGGGAA
66 TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGGGAA
*
2504466 TGTGTTTATAGTGCCTAATCACAAAAAGAAAGAAGATCATTACTAGAATCCAAGTTTGTCTCATT
131 TGTGTTTATAGTGCCTAATCACAAAATGAAAGAAGATCATTACTAGAATCCAAGTTTGTCTCATT
* * *
2504531 TGAGGCACGAACTTAAACTTTATC-AAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACGAAAGC
196 TGAGGCACGAACTTAGACTTTA-CAAAAAATGGTGAGAAAAAAGCCTTTCTTGCAAAACGAAAGC
* * * * ** * * * * *
2504595 ATCGATATGATGTATCCGAAAGAGAAAACTTTGATTATAGTACCTTATCTTGAAAAGAATGGGGA
260 ATCAATATGATGTATCCTAATGAGAAGACAATGTTTATGGTGCCTAATC-CGAAAAGAATGGGGA
*
2504660 TTAGTATAAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGA
324 TTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACG-TGGA
* *
2504725 AGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAAGGAAGGGAATGTTTTT
388 AGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATG--TGT
* * *
2504790 TTGGCTCCGATTCTCCTAAAGA
451 TTGGCTCCCAATCTCATAAAGA
* * * * **
2504812 ATGGAGATTGTTATGAGAATCGATGCCTATCTTATTTAACAGATGAACTTTGATTTAAAGGAAAA
1 AAGGAGATTGTTATGAGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAA
* * *
2504877 TAGGGCAAAGAAAAGATTTCCAAGCAAAAGAAAACCATC---ATCATTTATCCTAATGAGGAGAA
66 TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGGGAA
* * * * * * *
2504939 TGCGTTTATAGTACCTAATCACAAAATGAAGGAAGACCATTATTAGAATCCATGTTTGTCTCTTT
131 TGTGTTTATAGTGCCTAATCACAAAATGAAAGAAGATCATTACTAGAATCCAAGTTTGTCTCATT
* * * * *
2505004 TGAAGCATGAACTTAGACTTTACAAAAAATGCTGAGAAAAAAGCCTTTCTTGCGAAACAAAAGCA
196 TGAGGCACGAACTTAGACTTTACAAAAAATGGTGAGAAAAAAGCCTTTCTTGCAAAACGAAAGCA
* *
2505069 TCAATACGATGTATCGTAATGAGAAGACAATGTTTATGGTGCCTAATCCGGAAAAGAATGGGGAT
261 TCAATATGATGTATCCTAATGAGAAGACAATGTTTATGGTGCCTAATCC-GAAAAGAATGGGGAT
* * * *
2505134 TAGTATGAGTATTTATATTTGTCTTATTTAAGAGACAAATTTTGATT-TATCAAAAATGGTGGAA
325 TAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA-CGTGGAA
* * * * * *
2505198 GGAAAAGTTTTTTTTGCAACATCAAAGCATCAATGTCATGTATCCTAATGATGGGAATTTGTTTT
389 GGAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGTG-TTT
* *
2505263 GGCTTCACAATCTTGA-AAAGA
453 GGC-TCCCAATC-TCATAAAGA
** * * * * * ** *
2505284 ACTGAGATAGTTACGAGAATCAATTCTTGTCTTTTTTAAGGTATGAACACTGTTTTAAAGGAAAA
1 AAGGAGATTGTTATGAGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAA
* * * * *
2505349 -AAGGCAAAGAAAAGATTCCCATGCAGAAGAAAATCATCAATATCATTTATCCTAGTGAGGCG-A
66 TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGGGAA
* *
2505412 -------ATA-TG--TAATTACAAAATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATT
131 TGTGTTTATAGTGCCTAATCACAAAATGAAAGAAGATCATTACTAGAATCCAAGTTTGTCTCATT
* *
2505467 TGAGATGCA--AACTTAGACTTTACAAAAAATGGTGAGAAAAATA-CGTTTCTTGCAAAATGAAA
196 TGAG--GCACGAACTTAGACTTTACAAAAAATGGTGAGAAAAA-AGCCTTTCTTGCAAAACGAAA
* * * * * *
2505529 GCATCATTATTATGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTTATCCTGAAAAGAATAGG
258 GCATCAATATGATGTATCCTAATGAGAAGACAATGTTTATGGTGCCTAATCC-GAAAAGAATGGG
* **
2505594 GATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAAAAACTTTGATTCTATTGAAAACGGTG
322 GATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAC-GTG
* * *
2505659 GAAAGAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCGTGTATCCTAATAAAGGGAATGTGT
386 GAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGTG-
* *
2505724 TTTGGCTTCACAATCTTGA-AAAGA
450 TTTGGC-TCCCAATC-TCATAAAGA
** *** * *
2505748 ACTGAGACAATTACGAGAATCAATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTAAAGGAAAA
1 AAGGAGATTGTTATGAGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAA
* * * * *
2505813 TAGGGCAAAGAAAAGATTTTCGTGCAAAGGAAAATCATTAAGATCA--T-T--T-ATGAGGGGAA
66 TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGGGAA
* * * * * *
2505872 TATGTTTGTAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCTAAGTTTGTTTTATT
131 TGTGTTTATAGTGCCTAATCACAAAATGAAAGAAGATCATTACTAGAATCCAAGTTTGTCTCATT
* *
2505937 TGAGGCACGAACTTAGACTTTACAAAAAATAGTGAGAAAAAAGCCTTTCTTGCAAAACAAAAGCA
196 TGAGGCACGAACTTAGACTTTACAAAAAATGGTGAGAAAAAAGCCTTTCTTGCAAAACGAAAGCA
* * ** * *
2506002 TCAGTATGATATATTGTAATGAGAAGACAATGTTTATGGTGCCTAATCTAGAAAAGAATTGGGAT
261 TCAATATGATGTATCCTAATGAGAAGACAATGTTTATGGTGCCTAATC-CGAAAAGAATGGGGAT
2506067 TAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAA
325 TAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACG-TGGAA
* * *
2506132 GGAAAAGTTTTTCTTGCAACACCAAAGCATCAATTTCATGTATCCTAAGGAAGGGAATGTTTTTT
389 GGAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATG-TGTTT
* * *
2506197 GGCTCCGATTCTCGTAAAGA
453 GGCTCCCAATCTCATAAAGA
** * ** * * *
2506217 GTGGAGATTGTTACGAGAATTGATCCTTGTCTTATTTAGGGGATAAACTTTGATTTAAAGGAAAA
1 AAGGAGATTGTTATGAGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAA
* * *
2506282 TAGGGCAAAGAAAAGATTTTCATGCAAATGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
66 TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGGGAA
* * * *
2506347 TATGTTTATAGTGCCTAATTACAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCTTT
131 TGTGTTTATAGTGCCTAATCACAAAATGAAAGAAGATCATTACTAGAATCCAAGTTTGTCTCATT
* * * * **
2506412 TAAAGCAGGAACTTAGGCTTTACAAAAAATGGTGAGAAAAAAGCCTTTCTTGTGAAACGAAAGCA
196 TGAGGCACGAACTTAGACTTTACAAAAAATGGTGAGAAAAAAGCCTTTCTTGCAAAACGAAAGCA
*
2506477 TCAATATGATGTATCATAATGAGAAGACAATGTTTATGGTGCCTAATC
261 TCAATATGATGTATCCTAATGAGAAGACAATGTTTATGGTGCCTAATC
2506525 TAGAATAAGA
Statistics
Matches: 3514, Mismatches: 494, Indels: 149
0.85 0.12 0.04
Matches are distributed among these distances:
459 6 0.00
460 2 0.00
462 1 0.00
463 196 0.06
464 149 0.04
465 41 0.01
466 3 0.00
467 2 0.00
468 6 0.00
469 107 0.03
470 275 0.08
471 92 0.03
472 492 0.14
473 532 0.15
474 914 0.26
475 189 0.05
476 506 0.14
477 1 0.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (472 bp):
AAGGAGATTGTTATGAGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAA
TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGGGAA
TGTGTTTATAGTGCCTAATCACAAAATGAAAGAAGATCATTACTAGAATCCAAGTTTGTCTCATT
TGAGGCACGAACTTAGACTTTACAAAAAATGGTGAGAAAAAAGCCTTTCTTGCAAAACGAAAGCA
TCAATATGATGTATCCTAATGAGAAGACAATGTTTATGGTGCCTAATCCGAAAAGAATGGGGATT
AGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGTGGAAGG
AAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGTGTTTGGC
TCCCAATCTCATAAAGA
Found at i:2506635 original size:308 final size:309
Alignment explanation
Indices: 2506221--2506841 Score: 849
Period size: 308 Copynumber: 2.0 Consensus size: 309
2506211 TAAAGAGTGG
* * * * * *
2506221 AGATTGTTACGAGAATTGATCCTTGTCTTATTTAGGGGATAAACTTTGATTTAAAGGAAAATAGG
1 AGATAGTTACGAGAATCGATACTTGTCTTATTTAAGGGATAAACATCGATTTAAAGGAAAATA-G
* *
2506286 GCAAAGAAAAGATTTTCATGCAAATGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATG
65 GCAAAGAAAAGATTCTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATG
* * * * * *
2506351 TTTATAGTGCCTAATTACAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCTTTTAA-
130 TTTATAGTACCTAATCACAAAATGAAAGAAGACCATTACAAGAATCCAAGTTTGTCTCATTTAAG
* *
2506415 A-GCAGGAACTTAGGCTTTACAAAAAATGGTGAGAAAAAAGCCTTTCTTGTGAAACGAAAGCATC
195 ATGC--GAACTTAGACTTTACAAAAAATGGTGAGAAAAAAGCCTTTCTTGCGAAACGAAAGCATC
*
2506479 AATATGATGTATCATAATGAGAAGACAATGTTTATGGTGCCTAATCTAGAATA
258 AATATGATGTATCATAAAGAGAAGACAATGTTTATGGTGCCTAATCTAGAA-A
* * *
2506532 AGATAGTTACGAGAATCGATACTTGTCTTATTTAAGGTAT-AACATCGTTTTAAAGGAACATCA-
1 AGATAGTTACGAGAATCGATACTTGTCTTATTTAAGGGATAAACATCGATTTAAAGGAAAAT-AG
* *
2506595 GC-AAGAAAAGATTC-CTATGCAAAAGAAAATCATCAATATCATTTATCCTAGTGAGGCGAATAT
65 GCAAAGAAAAGATTCTC-ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATAT
* *
2506658 GTTTATAGTACCTAATCACAAAATGAATGAAGACCATTACAAGAATCCAAGTTTGTCTCATTTGA
129 GTTTATAGTACCTAATCACAAAATGAAAGAAGACCATTACAAGAATCCAAGTTTGTCTCATTTAA
* * *
2506723 GATGCGAACTTAGACTTTACAAAAAATGGTGGGAAAAATGCGTTTCTTGCGAAACGAAAGCATCA
194 GATGCGAACTTAGACTTTACAAAAAATGGTGAGAAAAAAGCCTTTCTTGCGAAACGAAAGCATCA
* * * * * *
2506788 TTATTATGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTTATCTTGAAA
259 ATATGATGTATCATAAAGAGAAGACAATGTTTATGGTGCCTAATCTAGAAA
2506839 AGA
1 AGA
2506842 AAGGGGATTA
Statistics
Matches: 273, Mismatches: 33, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
307 5 0.02
308 210 0.77
309 3 0.01
310 19 0.07
311 36 0.13
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.30
Consensus pattern (309 bp):
AGATAGTTACGAGAATCGATACTTGTCTTATTTAAGGGATAAACATCGATTTAAAGGAAAATAGG
CAAAGAAAAGATTCTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGT
TTATAGTACCTAATCACAAAATGAAAGAAGACCATTACAAGAATCCAAGTTTGTCTCATTTAAGA
TGCGAACTTAGACTTTACAAAAAATGGTGAGAAAAAAGCCTTTCTTGCGAAACGAAAGCATCAAT
ATGATGTATCATAAAGAGAAGACAATGTTTATGGTGCCTAATCTAGAAA
Found at i:2507710 original size:474 final size:471
Alignment explanation
Indices: 2506536--2508317 Score: 2128
Period size: 474 Copynumber: 3.8 Consensus size: 471
2506526 AGAATAAGAT
* * *
2506536 AGTTACGAGAATCGATACTTGTCTTATTTAAGGTAT-AACATCGTTTTAAAGGAACATCA-GC-A
1 AGTTACGAGAATCGATGCTTGTCTTATTTAAGGTATGAACATCGATTTAAAGGAAAAT-AGGCAA
* * * * **
2506598 AGAAAAGATTCCTATGCAAAAGAAAATCATCAATATCATTTATCCTAGTGAGGCGAATATGTTTA
65 AGAAAAGATTCCAATGCAAAAGAAAATCATCAAT-TTATTTATCCTAATGAGGAGAATGCGTTTA
* * *
2506663 TAGTACCTAATCACAAAATGAATGAAGACCATTACA-AGAATCCAAGTTTGTCTCATTTGA-G-A
129 TAGTGCCTAATCACAAAATGAAAGAAGATCATTA-ATAGAATCCAAGTTTGTCTCATTTGAGGCA
* * * * *
2506725 TGCGAACTTAGACTTTACAAAAAATGGTGGGAAAAATGCGTTTCTTGCGAAACGAAAGCATCATT
193 T--GAACTTAGACTTTA-AAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAAT
* * * *
2506790 ATTATGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTTATCTTGAAAAGAAAGGGGATTAGTA
255 ACTATGTATCCTAAAGAGAAGACTATGTTTATGTTGCCTTATCCTGAAAAGAATGGGGATTAGTA
* * * *
2506855 TGAGTATTCATGTTTGTCTTATTTAAGAGAAAAACTTTGATTCTATCAAAAATGGTGGAAAGAAA
320 TGAGTATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAA
* * * * *
2506920 AGTTTTTCTGGCGACACCAAAGCATCAATTTCGTGTATCCTAAT-AAGCGGATTGTGTTTTGGCT
385 AGTATTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAATGAAG-GGAATGTG-TTT-GCC
**
2506984 TCACAATCTTGAAAAGAATTGAGAC
447 TCACAATCTTGAAAAGAAAAGAGAC
* * * * * *
2507009 AATTACGAGAATTGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAA
1 AGTTACGAGAATCGATGCTTGTCTTATTTAAGGTATGAACATCGATTTAAAGGAAAATA-GGCAA
* * *
2507074 AGAAAAGATTTTC-ATGCAAAAGAAAATCATCACTATTATTTATCCTAATGAGGAGAATGCATTT
65 AGAAAAGA-TTCCAATGCAAAAGAAAATCATCAAT-TTATTTATCCTAATGAGGAGAATGCGTTT
* ** * * *
2507138 ATAGTGCCTAATCACAAAATGAATA-AAAATCATTGCTAGAATCTACGTTTGTCTCATTTGAGAC
128 ATAGTGCCTAATCACAAAATGAA-AGAAGATCATTAATAGAATCCAAGTTTGTCTCATTTGAGGC
* * * * * *
2507202 ACGAACTTAGACTTTAAAAAATTTGATGGGAAAAAAACTTTTCTAGCAAAATGAAAGCATCAATA
192 ATGAACTTAGACTTTAAAAAA-TTGGTGGGAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAATA
* *
2507267 CTACGTATCCTAAAAAGAAGA-TAATGTTTATGTTGCCTTATCCTGAAAAGAATGGGGATTAGTA
256 CTATGTATCCTAAAGAGAAGACT-ATGTTTATGTTGCCTTATCCTGAAAAGAATGGGGATTAGTA
*
2507331 TGAGTATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTTTATCAAAAACGGTGGAAGGAAA
320 TGAGTATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAA
* * * * *
2507396 AGTGTTTCTTGCGACCCCAAAGCATCAATTTCATGTATCCTATTGAAGGGAATGTGTTTGTCTCC
385 AGTATTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGTGTTTGCCTCA
* *
2507461 CAATC-TCATAAAGAAAAGAGAT
450 CAATCTTGA-AAAGAAAAGAGAC
* ** * * * *
2507483 TGTTACGAGAATTAATGCTTGTCTTATTTAAGGAATGAACTTTGATTTCAAGGAAAATAGGGCAA
1 AGTTACGAGAATCGATGCTTGTCTTATTTAAGGTATGAACATCGATTTAAAGGAAAATA-GGCAA
* * * *
2507548 AGAAAAGATTTCC-ATGCAGAAGAAAATCATCAATTTCTTTTATCCTAATGAGGGGAATGCGCTT
65 AGAAAAGA-TTCCAATGCAAAAGAAAATCATCAATTT-ATTTATCCTAATGAGGAGAATGCGTTT
2507612 ATAGTGCCTAATCACAAAATGAAAGAAGATCATTAATAGAATCCAAGTTTGTCTCATTTGAGGCA
128 ATAGTGCCTAATCACAAAATGAAAGAAGATCATTAATAGAATCCAAGTTTGTCTCATTTGAGGCA
** *
2507677 TGAACTTAGACTTGATCGAAAA-TGGTTGGAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAAT-
193 TGAACTTAGACTT--TAAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAATA
* * * * *
2507740 TTGATGTATCCTAATGAGAAGACAATGTTTATAG-TGCATAAT-CTGAAAAAGAATGGGGATTAG
256 CT-ATGTATCCTAAAGAGAAGACTATGTTTAT-GTTGCCTTATCCTG-AAAAGAATGGGGATTAG
* * *
2507803 TATGAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGATGGAAGGA
318 TATGAGTATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGA
* * * ** *
2507868 AAAGTATTTCTTACGACATCAAAGCATCAATGTCATGTATCCTAATGAAGTAAATGTG-TAGCCT
383 AAAGTATTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGTGTTTGCCT
* *
2507932 CATAATCTTGAAAAGAACAGAGAC
448 CACAATCTTGAAAAGAAAAGAGAC
* * * * * *
2507956 AGTTATGATG-ATCGATTCTTGTCTTATCTAAGGTTTGAACATCGTTTTAAGGGAAAATAGGCAA
1 AGTTACGA-GAATCGATGCTTGTCTTATTTAAGGTATGAACATCGATTTAAAGGAAAATAGGCAA
2508020 AGAAAAGATTCCAATGC----G-AAAT-ATC-----ATTTATCCTAATGAGGAGAATGCGTTTAT
65 AGAAAAGATTCCAATGCAAAAGAAAATCATCAATTTATTTATCCTAATGAGGAGAATGCGTTTAT
* * * *
2508074 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACGTTTGTCTCATTTCAGGCATG
130 AGTGCCTAATCACAAAATGAAAGAAGATCATTAATAGAATCCAAGTTTGTCTCATTTGAGGCATG
* * * *
2508139 AACCTAGACTTTAAAAAATTTGGTGGGAAAAAAGCCTTTCTTGCGAAATGAAAGCATCAATACGA
195 AACTTAGACTTTAAAAAA-TTGGTGGGAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAATACTA
*
2508204 TGTATCCTAAAGAGAAGACTATGTTAATGTTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAG
259 TGTATCCTAAAGAGAAGACTATGTTTATGTTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAG
* * *
2508269 TATTCATGTCTGTCATATTTAGGAGGCAAACTTTGATTCTATCAAAAAC
324 TATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAAC
2508318 TGATGACAAC
Statistics
Matches: 1128, Mismatches: 152, Indels: 71
0.83 0.11 0.05
Matches are distributed among these distances:
458 5 0.00
459 1 0.00
460 234 0.21
461 3 0.00
466 3 0.00
467 4 0.00
468 1 0.00
471 4 0.00
472 17 0.02
473 105 0.09
474 413 0.37
475 12 0.01
476 319 0.28
477 6 0.01
478 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.31
Consensus pattern (471 bp):
AGTTACGAGAATCGATGCTTGTCTTATTTAAGGTATGAACATCGATTTAAAGGAAAATAGGCAAA
GAAAAGATTCCAATGCAAAAGAAAATCATCAATTTATTTATCCTAATGAGGAGAATGCGTTTATA
GTGCCTAATCACAAAATGAAAGAAGATCATTAATAGAATCCAAGTTTGTCTCATTTGAGGCATGA
ACTTAGACTTTAAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAATACTATG
TATCCTAAAGAGAAGACTATGTTTATGTTGCCTTATCCTGAAAAGAATGGGGATTAGTATGAGTA
TTCATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGTATT
TCTTGCGACACCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGTGTTTGCCTCACAATCT
TGAAAAGAAAAGAGAC
Found at i:2507842 original size:950 final size:930
Alignment explanation
Indices: 2506532--2508317 Score: 2415
Period size: 950 Copynumber: 1.9 Consensus size: 930
2506522 ATCTAGAATA
* * * *
2506532 AGATAGTTACGAGAATCGATACTTGTCTTATTTAAGGTATAACATCGTTTTAAAGGAACATCAGC
1 AGATAGTTACGAGAATCAATACTTGTCTTATTTAAGGAATAACATCGATTTAAAGGAAAATCAGC
* * *
2506597 AAGAAAAGATTCCTATGCAAAAGAAAATCATCAATATCATTTATCCTAGTGAGGCGAATATGTTT
66 AAGAAAAGATTCCTATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGCGAATACGCTT
*
2506662 ATAGTACCTAATCACAAAATGAATGAAGACCATTACAAGAATCCAAGTTTGTCTCATTTGAGATG
131 ATAGTACCTAATCACAAAATGAAAGAAGACCATTACAAGAATCCAAGTTTGTCTCATTTGAGAT-
* * * *
2506727 CGAACTTAGACTTTACAAAAAATGGTGGGAAAAATGCGTTTCTTGCGAAACGAAAGCATCATTAT
195 CGAACTTAGACTTGACAAAAAATGGTGGGAAAAAAGCCTTTCTTGCAAAACGAAAGCATCATTAT
* * * * *
2506792 TATGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTTATCTTGAAAAGAAAGGGGATTAGTATG
260 GATGTATCCTAAAGAGAAGACAATGTTTATAGTGCATAATCTTGAAAAGAAAGGGGATTAGTATG
* * *
2506857 AGTATTCATGTTTGTCTTATTTAAGAGAAAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAG
325 AGTATTCATGTTTGTCTTATTTAAAAGAAAAACTTTGATTCTATCAAAAACGATGGAAAGAAAAG
* * * * * * * *
2506922 TTTTTCTGGCGACACCAAAGCATCAATTTCGTGTATCCTAAT-AAGCGGATTGTGTTTTGGCTTC
390 TATTTCTGACGACACCAAAGCATCAATGTCATGTATCCTAATGAAG-GAAATGTG---TAGCCTC
** * * * *
2506986 ACAATCTTGAAAAGAATTGAGACAATTACGA-GAATTGATGCTTGTCTTTTTTAAGGGATGAACT
451 ACAATCTTGAAAAGAACAGAGACAATTACGATG-ATCGATGCTTGTCTTATCTAAGGGATGAACA
* *
2507050 TTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTTC-ATGCAAAAGAAAATCATCACTATTATT
515 TCGATTTAAAGGAAAATA-GGCAAAGAAAAGA-TTCCAATGC----G-AAAT-AT--C----ATT
*
2507114 TATCCTAATGAGGAGAATGCATTTATAGTGCCTAATCACAAAATGAATAAAAATCATTGCTAGAA
566 TATCCTAATGAGGAGAATGCATTTATAGTGCCTAATCACAAAATGAATAAAAATCATTACTAGAA
* * * *
2507179 TCTACGTTTGTCTCATTTGAGACACGAACTTAGACTTTAAAAAATTTGATGGGAAAAAAACTTTT
631 TCCACGTTTGTCTCATTTCAGACACGAACCTAGACTTTAAAAAATTTGATGGGAAAAAAACCTTT
* *
2507244 CTAGCAAAATGAAAGCATCAATACTACGTATCCTAAAAAGAAGA-TAATGTTTATGTTGCCTTAT
696 CTAGCAAAATGAAAGCATCAATACGACGTATCCTAAAAAGAAGACT-ATGTTAATGTTGCCTTAT
*
2507308 CCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCATATTTAAGAGACAAACTTTGATT
760 CCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTCTGTCATATTTAAGAGACAAACTTTGATT
*
2507373 TTATCAAAAACGGTGGAAGGAAAAGTGTTTCTTGCGACCCCAAAGCATCAATTTCATGTATCCTA
825 CTATCAAAAACGGTGGAAGGAAAAGTGTTTCTTGCGACCCCAAAGCATCAATTTCATGTATCCTA
2507438 TTGAAGGGAATGTGTTTGTCTCCCAATCTCATAAAGAAAAG
890 TTGAAGGGAATGTGTTTGTCTCCCAATCTCATAAAGAAAAG
* * * * * *
2507479 AGATTGTTACGAGAATTAATGCTTGTCTTATTTAAGGAATGAACTTTGATTTCAAGGAAAAT-AG
1 AGATAGTTACGAGAATCAATACTTGTCTTATTTAAGGAAT-AACATCGATTTAAAGGAAAATCA-
* * * * *
2507543 GGCAAAGAAAAGATTTCC-ATGCAGAAGAAAATCATCAATTTCTTTTATCCTAATGAGGGGAATG
64 -GC-AAGAAAAGA-TTCCTATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGCGAATA
* *
2507607 CGCTTATAGTGCCTAATCACAAAATGAAAGAAGATCATTA-ATAGAATCCAAGTTTGTCTCATTT
126 CGCTTATAGTACCTAATCACAAAATGAAAGAAGACCATTACA-AGAATCCAAGTTTGTCTCATTT
* *
2507671 GAGGCAT-GAACTTAGACTTGATC-GAAAATGGTTGGAAAAAAGCCTTTCTTGCAAAACGAAAGC
190 GA-G-ATCGAACTTAGACTTGA-CAAAAAATGGTGGGAAAAAAGCCTTTCTTGCAAAACGAAAGC
* *
2507734 ATCAATT-TGATGTATCCTAATGAGAAGACAATGTTTATAGTGCATAATC-TGAAAAAGAATGGG
252 ATC-ATTATGATGTATCCTAAAGAGAAGACAATGTTTATAGTGCATAATCTTG-AAAAGAAAGGG
*
2507797 GATTAGTATGAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGATG
315 GATTAGTATGAGTATTCATGTTTGTCTTATTTAAAAGAAAAACTTTGATTCTATCAAAAACGATG
* * * *
2507862 GAAGGAAAAGTATTTCTTACGACATCAAAGCATCAATGTCATGTATCCTAATGAAGTAAATGTGT
380 GAAAGAAAAGTATTTCTGACGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGAAATGTGT
* * * * **
2507927 AGCCTCATAATCTTGAAAAGAACAGAGACAGTTATGATGATCGATTCTTGTCTTATCTAAGGTTT
445 AGCCTCACAATCTTGAAAAGAACAGAGACAATTACGATGATCGATGCTTGTCTTATCTAAGGGAT
* *
2507992 GAACATCGTTTTAAGGGAAAATAGGCAAAGAAAAGATTCCAATGCGAAATATCATTTATCCTAAT
510 GAACATCGATTTAAAGGAAAATAGGCAAAGAAAAGATTCCAATGCGAAATATCATTTATCCTAAT
* * *
2508057 GAGGAGAATGCGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACGTTT
575 GAGGAGAATGCATTTATAGTGCCTAATCACAAAATGAATAAAAATCATTACTAGAATCCACGTTT
* * * * * *
2508122 GTCTCATTTCAGGCATGAACCTAGACTTTAAAAAATTTGGTGGGAAAAAAGCCTTTCTTGCGAAA
640 GTCTCATTTCAGACACGAACCTAGACTTTAAAAAATTTGATGGGAAAAAAACCTTTCTAGCAAAA
* *
2508187 TGAAAGCATCAATACGATGTATCCTAAAGAGAAGACTATGTTAATGTTGCCTTATCCTGAAAAGA
705 TGAAAGCATCAATACGACGTATCCTAAAAAGAAGACTATGTTAATGTTGCCTTATCCTGAAAAGA
* *
2508252 ATGGGGATTAGTATGAGTATTCATGTCTGTCATATTTAGGAGGCAAACTTTGATTCTATCAAAAA
770 ATGGGGATTAGTATGAGTATTCATGTCTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAA
2508317 C
835 C
2508318 TGATGACAAC
Statistics
Matches: 736, Mismatches: 88, Indels: 43
0.85 0.10 0.05
Matches are distributed among these distances:
934 249 0.34
935 1 0.00
938 1 0.00
940 2 0.00
941 4 0.01
942 1 0.00
945 3 0.00
946 17 0.02
947 106 0.14
948 17 0.02
949 5 0.01
950 316 0.43
951 12 0.02
952 2 0.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.31
Consensus pattern (930 bp):
AGATAGTTACGAGAATCAATACTTGTCTTATTTAAGGAATAACATCGATTTAAAGGAAAATCAGC
AAGAAAAGATTCCTATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGCGAATACGCTT
ATAGTACCTAATCACAAAATGAAAGAAGACCATTACAAGAATCCAAGTTTGTCTCATTTGAGATC
GAACTTAGACTTGACAAAAAATGGTGGGAAAAAAGCCTTTCTTGCAAAACGAAAGCATCATTATG
ATGTATCCTAAAGAGAAGACAATGTTTATAGTGCATAATCTTGAAAAGAAAGGGGATTAGTATGA
GTATTCATGTTTGTCTTATTTAAAAGAAAAACTTTGATTCTATCAAAAACGATGGAAAGAAAAGT
ATTTCTGACGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGAAATGTGTAGCCTCACAAT
CTTGAAAAGAACAGAGACAATTACGATGATCGATGCTTGTCTTATCTAAGGGATGAACATCGATT
TAAAGGAAAATAGGCAAAGAAAAGATTCCAATGCGAAATATCATTTATCCTAATGAGGAGAATGC
ATTTATAGTGCCTAATCACAAAATGAATAAAAATCATTACTAGAATCCACGTTTGTCTCATTTCA
GACACGAACCTAGACTTTAAAAAATTTGATGGGAAAAAAACCTTTCTAGCAAAATGAAAGCATCA
ATACGACGTATCCTAAAAAGAAGACTATGTTAATGTTGCCTTATCCTGAAAAGAATGGGGATTAG
TATGAGTATTCATGTCTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGA
AAAGTGTTTCTTGCGACCCCAAAGCATCAATTTCATGTATCCTATTGAAGGGAATGTGTTTGTCT
CCCAATCTCATAAAGAAAAG
Found at i:2509281 original size:18 final size:18
Alignment explanation
Indices: 2509258--2509365 Score: 58
Period size: 21 Copynumber: 5.3 Consensus size: 18
2509248 ATCTTCTTCT
2509258 CTCCTCCTCCTATCATCC
1 CTCCTCCTCCTATCATCC
*
2509276 CTCCT-CTCTCTATTATCTCTC
1 CTCCTCCTC-CTATCA--TC-C
2509297 CTGTCTCTCCTCCTATCATCC
1 C--TC-CTCCTCCTATCATCC
*
2509318 CTCCTATCTCTACTATC-TCTC
1 CTCC--TC-CTCCTATCATC-C
2509339 CTATCTCTCCTCCTATCATCC
1 C--TC-CTCCTCCTATCATCC
2509360 CTCCTC
1 CTCCTC
2509366 TCTCTTCTTT
Statistics
Matches: 70, Mismatches: 4, Indels: 32
0.66 0.04 0.30
Matches are distributed among these distances:
17 3 0.04
18 14 0.20
19 4 0.06
20 6 0.09
21 22 0.31
22 6 0.09
23 4 0.06
24 8 0.11
25 3 0.04
ACGTcount: A:0.11, C:0.48, G:0.01, T:0.40
Consensus pattern (18 bp):
CTCCTCCTCCTATCATCC
Found at i:2509313 original size:42 final size:42
Alignment explanation
Indices: 2509261--2509379 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
2509251 TTCTTCTCTC
* *
2509261 CTCCTCCTATCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTATCT
*
2509303 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTATCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTATCT
* *
2509345 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
2509380 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.10, C:0.46, G:0.01, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTATCT
Found at i:2509320 original size:12 final size:11
Alignment explanation
Indices: 2509294--2509369 Score: 61
Period size: 12 Copynumber: 6.9 Consensus size: 11
2509284 TCTATTATCT
*
2509294 CTCCTGTCTCTC
1 CTCCTATCTC-C
2509306 CTCCTATCATCC
1 CTCCTATC-TCC
2509318 CTCCTATCT--
1 CTCCTATCTCC
*
2509327 CTACTATCT--
1 CTCCTATCTCC
2509336 CTCCTATCTCTC
1 CTCCTATCTC-C
2509348 CTCCTATCATCC
1 CTCCTATC-TCC
*
2509360 CTCCTCTCTC
1 CTCCTATCTC
2509370 TTCTTTCTCT
Statistics
Matches: 55, Mismatches: 4, Indels: 11
0.79 0.06 0.16
Matches are distributed among these distances:
9 16 0.29
11 3 0.05
12 32 0.58
13 4 0.07
ACGTcount: A:0.11, C:0.49, G:0.01, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:2509347 original size:9 final size:9
Alignment explanation
Indices: 2509289--2509349 Score: 56
Period size: 9 Copynumber: 7.1 Consensus size: 9
2509279 CTCTCTCTAT
2509289 TATCTCTCC
1 TATCTCTCC
*
2509298 TGTCTCTCC
1 TATCTCTCC
* *
2509307 T-CCTAT-C
1 TATCTCTCC
*
2509314 -ATCCCTCC
1 TATCTCTCC
*
2509322 TATCTCTAC
1 TATCTCTCC
2509331 TATCTCTCC
1 TATCTCTCC
2509340 TATCTCTCC
1 TATCTCTCC
2509349 T
1 T
2509350 CCTATCATCC
Statistics
Matches: 40, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
7 3 0.08
8 4 0.10
9 33 0.82
ACGTcount: A:0.11, C:0.44, G:0.02, T:0.43
Consensus pattern (9 bp):
TATCTCTCC
Found at i:2513112 original size:42 final size:42
Alignment explanation
Indices: 2513057--2513175 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
2513047 TTCTTCTCTC
* *
2513057 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
2513099 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
2513141 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
2513176 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:2513116 original size:12 final size:11
Alignment explanation
Indices: 2513090--2513165 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
2513080 TCTATTATCT
*
2513090 CTCCTGTCTCTC
1 CTCCTATCTC-C
2513102 CTCCTATCATCC
1 CTCCTATC-TCC
2513114 CTCCTATCT--
1 CTCCTATCTCC
*
2513123 CTACTATCT--
1 CTCCTATCTCC
*
2513132 CTCCTGTCTCTC
1 CTCCTATCTC-C
2513144 CTCCTATCATCC
1 CTCCTATC-TCC
*
2513156 CTCCTCTCTC
1 CTCCTATCTC
2513166 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:2513117 original size:24 final size:24
Alignment explanation
Indices: 2513081--2513166 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
2513071 CCTCCTCTCT
* *
2513081 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
2513105 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
2513126 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
2513147 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
2513167 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:2513141 original size:18 final size:18
Alignment explanation
Indices: 2513072--2513142 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
2513062 CCTGTCATCC
* *
2513072 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
2513090 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
2513112 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
2513132 CTCCTGTCTCT
1 CTCCTGTCTCT
2513143 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:2515470 original size:42 final size:42
Alignment explanation
Indices: 2515418--2515536 Score: 141
Period size: 42 Copynumber: 2.8 Consensus size: 42
2515408 TTCTTCCCTC
* * * *
2515418 CTCCTCCTATCATCCCTCCACTCTCTATTATCTCTTCTATCT
1 CTCCTTCTATCATCCCTCCAATCTCTACTATCTCTCCTATCT
* *
2515460 CTCCTTCTATCATCCCTTCAATCTCTACTGTCTCTCCTATCT
1 CTCCTTCTATCATCCCTCCAATCTCTACTATCTCTCCTATCT
* * *
2515502 CTCC-TCATATCATCCCTCCTATCTCTTCTTTCTCT
1 CTCCTTC-TATCATCCCTCCAATCTCTACTATCTCT
2515537 TTGAGGGCTA
Statistics
Matches: 66, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
41 2 0.03
42 64 0.97
ACGTcount: A:0.13, C:0.42, G:0.01, T:0.44
Consensus pattern (42 bp):
CTCCTTCTATCATCCCTCCAATCTCTACTATCTCTCCTATCT
Found at i:2518289 original size:9 final size:9
Alignment explanation
Indices: 2518277--2518337 Score: 50
Period size: 9 Copynumber: 6.1 Consensus size: 9
2518267 CTCTCTCTAT
2518277 TATCTCTCC
1 TATCTCTCC
2518286 TATCTCTCC
1 TATCTCTCC
2518295 TCCAATCATCCCTCC
1 T---ATC-T--CTCC
*
2518310 TATCTCTAC
1 TATCTCTCC
*
2518319 GATCTCTCC
1 TATCTCTCC
2518328 TATCTCTCC
1 TATCTCTCC
2518337 T
1 T
2518338 CTTACCATCC
Statistics
Matches: 42, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
9 29 0.69
11 1 0.02
12 6 0.14
13 1 0.02
15 5 0.12
ACGTcount: A:0.15, C:0.44, G:0.02, T:0.39
Consensus pattern (9 bp):
TATCTCTCC
Found at i:2518308 original size:42 final size:42
Alignment explanation
Indices: 2518262--2518358 Score: 140
Period size: 42 Copynumber: 2.3 Consensus size: 42
2518252 CTCCTGTCAA
* ** *
2518262 CCCTCCTCTCTCTATTATCTCTCCTATCTCTCCTCCAATCAT
1 CCCTCCTATCTCTACGATCTCTCCTATCTCTCCTCCAACCAT
**
2518304 CCCTCCTATCTCTACGATCTCTCCTATCTCTCCTCTTACCAT
1 CCCTCCTATCTCTACGATCTCTCCTATCTCTCCTCCAACCAT
2518346 CCCTCCTATCTCT
1 CCCTCCTATCTCT
2518359 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.13, C:0.46, G:0.01, T:0.39
Consensus pattern (42 bp):
CCCTCCTATCTCTACGATCTCTCCTATCTCTCCTCCAACCAT
Found at i:2521231 original size:316 final size:317
Alignment explanation
Indices: 2520648--2521280 Score: 1015
Period size: 316 Copynumber: 2.0 Consensus size: 317
2520638 TGATACCAAT
* * *
2520648 TGATGACAAACATAATCCAAGGTTGTCTAAATAATGATTTTGAGATGGATTTCTAATAACAAACA
1 TGATGACAAACATAATCCAAGGTTGCCTAAATAATGATCTTGAGATGGATTTCTAACAACAAACA
2520713 GAATTATTAATGCAAGAACAGAAATTGAAAGAAGCAAAAAAAAAAAAACAAAACTAGAATAGATT
66 GAATTATTAATGCAAGAACAGAAATTGAAAGAAGCAAAAAAAAAAAAACAAAACTAGAATAGATT
* * *
2520778 AGAGATGAAGGATGGTGCCACAATCACAAGATTGATAAGCCAAAAGGAATTATTGCCACAAGAGT
131 AGAGATGAAGGATGGCGCCACAATCACAAGATTGATAAGCCAAAAGGAATGATCGCCACAAGAGT
*
2520843 CTTGGCCTCTTGATAAGATCCAGAAAAATTGGCTCACTCAAGAACCTAAGAATCATACTCTCACA
196 CTTGGCCTCTTGATAAGATCCAGAAAAATTGGCTCACTCAAGAACCTAAGAATCACACTCTCACA
* * *
2520908 TAAAATGTGTTTAATCT-ATAAATATCAATGTTTGCCCCCTTCCAAATCTGTTTACAAG
261 AAAAATGTGTTTAATCTGA-AAATATCAATGTCTACCCCC-TCCAAATCTGTTTACAAG
* **
2520966 TGATGACAACCATGAA-CCAAGGTTGCCTAAATAATGATCTTGAGATGGATTTCTAACATTAAAC
1 TGATGACAAACAT-AATCCAAGGTTGCCTAAATAATGATCTTGAGATGGATTTCTAACAACAAAC
** * * *
2521030 AGAATTATTAATGCAAGAACAGAAATTGAAAGAAGC-CGAAAAAAATAACAAAA-TGGAATCGAT
65 AGAATTATTAATGCAAGAACAGAAATTGAAAGAAGCAAAAAAAAAAAAACAAAACTAGAATAGAT
2521093 TAGAGATGAAGGATGGCGCCACAATCACAAGATTGATAAGCCAAAAGGAATGATCGCCACAAGAG
130 TAGAGATGAAGGATGGCGCCACAATCACAAGATTGATAAGCCAAAAGGAATGATCGCCACAAGAG
*
2521158 TCTTGGCCTCTTGATAAGATCCAG-AAAATTGGCTCACTCAAGAACTTAAGAATCACACTCTCAC
195 TCTTGGCCTCTTGATAAGATCCAGAAAAATTGGCTCACTCAAGAACCTAAGAATCACACTCTCAC
*
2521222 ACAAAAATGTGTTTAATCTGAAAATATGAATGTCTACCCCCTCCAAATCTGTTTACAAG
260 A-AAAAATGTGTTTAATCTGAAAATATCAATGTCTACCCCCTCCAAATCTGTTTACAAG
2521281 AGCTTATATA
Statistics
Matches: 292, Mismatches: 20, Indels: 9
0.91 0.06 0.03
Matches are distributed among these distances:
315 57 0.20
316 127 0.43
317 15 0.05
318 91 0.31
319 2 0.01
ACGTcount: A:0.42, C:0.17, G:0.17, T:0.24
Consensus pattern (317 bp):
TGATGACAAACATAATCCAAGGTTGCCTAAATAATGATCTTGAGATGGATTTCTAACAACAAACA
GAATTATTAATGCAAGAACAGAAATTGAAAGAAGCAAAAAAAAAAAAACAAAACTAGAATAGATT
AGAGATGAAGGATGGCGCCACAATCACAAGATTGATAAGCCAAAAGGAATGATCGCCACAAGAGT
CTTGGCCTCTTGATAAGATCCAGAAAAATTGGCTCACTCAAGAACCTAAGAATCACACTCTCACA
AAAAATGTGTTTAATCTGAAAATATCAATGTCTACCCCCTCCAAATCTGTTTACAAG
Found at i:2525981 original size:9 final size:9
Alignment explanation
Indices: 2525969--2526029 Score: 56
Period size: 9 Copynumber: 7.1 Consensus size: 9
2525959 CTCTCTCTAT
2525969 TATCTCTCC
1 TATCTCTCC
2525978 TATCTCTCC
1 TATCTCTCC
* *
2525987 T-CCTAT-C
1 TATCTCTCC
*
2525994 -ATCCCTCC
1 TATCTCTCC
*
2526002 TATCTCTAC
1 TATCTCTCC
2526011 TATCTCTCC
1 TATCTCTCC
*
2526020 TGTCTCTCC
1 TATCTCTCC
2526029 T
1 T
2526030 CCTATCATCC
Statistics
Matches: 40, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
7 3 0.08
8 4 0.10
9 33 0.82
ACGTcount: A:0.11, C:0.44, G:0.02, T:0.43
Consensus pattern (9 bp):
TATCTCTCC
Found at i:2525989 original size:12 final size:12
Alignment explanation
Indices: 2525974--2526008 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
2525964 TCTATTATCT
2525974 CTCCTATCTCTC
1 CTCCTATCTCTC
2525986 CTCCTATCATC-C
1 CTCCTATC-TCTC
2525998 CTCCTATCTCT
1 CTCCTATCTCT
2526009 ACTATCTCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
11 2 0.10
12 17 0.81
13 2 0.10
ACGTcount: A:0.11, C:0.49, G:0.00, T:0.40
Consensus pattern (12 bp):
CTCCTATCTCTC
Found at i:2525996 original size:42 final size:42
Alignment explanation
Indices: 2525941--2526059 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
2525931 TTCTTCTCTC
* *
2525941 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTATCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTATCT
* *
2525983 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTATCT
* *
2526025 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
2526060 TTGGGGGCTA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.09, C:0.46, G:0.02, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTATCT
Found at i:2526001 original size:24 final size:24
Alignment explanation
Indices: 2525965--2526050 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
2525955 CCTCCTCTCT
* *
2525965 CTATTATCTCTCCTATCTCTCCTC
1 CTATCATCCCTCCTATCTCTCCTC
*
2525989 CTATCATCCCTCCTA--TCT-CTA
1 CTATCATCCCTCCTATCTCTCCTC
*
2526010 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTATCTCTCCTC
*
2526031 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTATCTCT
2526051 TCTTTCTCTT
Statistics
Matches: 50, Mismatches: 6, Indels: 12
0.74 0.09 0.18
Matches are distributed among these distances:
18 5 0.10
20 4 0.08
21 14 0.28
22 4 0.08
24 23 0.46
ACGTcount: A:0.12, C:0.45, G:0.01, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTATCTCTCCTC
Found at i:2528017 original size:386 final size:385
Alignment explanation
Indices: 2527301--2528063 Score: 1269
Period size: 386 Copynumber: 2.0 Consensus size: 385
2527291 TACAAGAGCT
* * *
2527301 TATATATGCCCTCATAAGCTATAGTTAACATAAACCCTAAGGGGCTTATTATGCTAACAAGCCCA
1 TATATATGCCCTCATAAGCCATAGTTAACACAAACCCTAAGGGGCTTATTATGCTAAAAAGCCCA
* *
2527366 ACTCTTACTTAAACCCAAATAACAAGTTTTTATGCTAAATAAAGCCCAAAGCAAGTCACAACCAG
66 ACTCTTACTTAAACCCAAATAACAAGTTTTTATGCTAAATAAAGCCCAAAGCAAGCCACAAACAG
* *
2527431 CAGGCCCTTATTACAAAATAACCCAAGTCCTAATTCAATCCATTGGAGCCCATATCTTCAAAATA
131 CAAGCCCTTATTACAAAATAACCCAAGTCCTAATTCAATCCATTGGAGCCAATATCTTCAAAATA
* *
2527496 TATGCAATTAACTAGCTTGGGCTCTTCTAACTCCAAATTGGGTCTACTTTCAAATAGGCCAGCAA
196 TATGCAATTAACTAGCTTAGGCTCTTCTAACTCCAAATTGAGTCTACTTTCAAATAGGCCAGCAA
*
2527561 CCATCTTCTCTAGGTCTTCCTCTATCCTCGTTGCCTTTGCCCTCGTTATTGGTCCTTGAAATCCT
261 CCATCTTCTCTAGGTCTTCCTCTATCCTCGTTGCCTTTGCCCTCGTCATTGGTCCTTGAAATCCT
* *
2527626 TCCAACGCCTTCAGGTCTTTGTCTTCAATGGACCTTCCTTGGTTTTCATCAACAAGTGTG
326 TCCAACGCCTTCAGGTCGTTGTCTTCAATGGACCTTCCTTGGTTCTCATCAACAAGTGTG
* *
2527686 TATATATGCCCTTATAAGCCATAGTTAACACAAACCCTAAGGGGCTTATTGTGCTAAAAAGCCCA
1 TATATATGCCCTCATAAGCCATAGTTAACACAAACCCTAAGGGGCTTATTATGCTAAAAAGCCCA
* * *
2527751 ACTTTTAGTT-AACCCAAATAACAAGTTCTTTATGCTAAATAAAGCCCAAAGTAAGCCACAAACA
66 ACTCTTACTTAAACCCAAATAACAAGTT-TTTATGCTAAATAAAGCCCAAAGCAAGCCACAAACA
*
2527815 GCAAGCCCTTTATTACAAAATAACCCAAGTCCTAATTCAATCCATTGGAGCCAATATCTTCCAAA
130 GCAAGCCC-TTATTACAAAATAACCCAAGTCCTAATTCAATCCATTGGAGCCAATATCTTCAAAA
* *
2527880 TATATGCAATTGACTAGCTTAGGCTCTTCTAACTCCAAATTGAGTCTACTTTCAAATAGGGCAGC
194 TATATGCAATTAACTAGCTTAGGCTCTTCTAACTCCAAATTGAGTCTACTTTCAAATAGGCCAGC
* *
2527945 AACCATCTTCTCTAGGTCTTCCTTTATCCTCTTTGCCTTTGCCCTCGTCATTGGTCCTTGAAA-C
259 AACCATCTTCTCTAGGTCTTCCTCTATCCTCGTTGCCTTTGCCCTCGTCATTGGTCCTTGAAATC
* *
2528009 TTTTCCAACGCCTTTAGGTCGTTGTCTTCAATGGACCTTCCTTGGTTCTCATCAA
324 -CTTCCAACGCCTTCAGGTCGTTGTCTTCAATGGACCTTCCTTGGTTCTCATCAA
2528064 ATACGATGTA
Statistics
Matches: 351, Mismatches: 24, Indels: 5
0.92 0.06 0.01
Matches are distributed among these distances:
384 17 0.05
385 109 0.31
386 225 0.64
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.31
Consensus pattern (385 bp):
TATATATGCCCTCATAAGCCATAGTTAACACAAACCCTAAGGGGCTTATTATGCTAAAAAGCCCA
ACTCTTACTTAAACCCAAATAACAAGTTTTTATGCTAAATAAAGCCCAAAGCAAGCCACAAACAG
CAAGCCCTTATTACAAAATAACCCAAGTCCTAATTCAATCCATTGGAGCCAATATCTTCAAAATA
TATGCAATTAACTAGCTTAGGCTCTTCTAACTCCAAATTGAGTCTACTTTCAAATAGGCCAGCAA
CCATCTTCTCTAGGTCTTCCTCTATCCTCGTTGCCTTTGCCCTCGTCATTGGTCCTTGAAATCCT
TCCAACGCCTTCAGGTCGTTGTCTTCAATGGACCTTCCTTGGTTCTCATCAACAAGTGTG
Found at i:2530027 original size:477 final size:475
Alignment explanation
Indices: 2528058--2530157 Score: 2597
Period size: 475 Copynumber: 4.4 Consensus size: 475
2528048 CCTTGGTTCT
* * * *
2528058 CATCAAATACGATGTATCCTAAAGAAAAGACTATGTTTATGTTGCCTTATCCT-GAAAAGAATGG
1 CATC-AATATGATGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTAAT-CTAGAAAAGAATGG
* * * * * *
2528122 GGATTAGTGTGAGTATTCATGTTTGTCATATTTGAGAGACAAACTTTAATTCTATCAAAAGCGGC
64 GGATTAGTATGAGTATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACAGT
* * ** *
2528187 GGAAGGAAAAGTTTTTCTTACGACACCAAAGAATCAATTTCATGTATCCTAATGAAGAAAATGTG
129 GGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGAG
* ** * * * * *
2528252 TTCTGGC-TCTGATTCTTGTAAAGAA-TAGAGATCGTTACGAGAAAT-GATGCTTGTCATATTTA
194 TTTTGGCTTCACAATCTCGAAAAGAACT-GAGATAGTTACGAG-AATCGATGCTTGTCTTATTTA
* * *
2528314 AGGGATGAACTTTGATTCAAAGGAAAATATGCCAAAGAAAAGATTTCCATGCAAAAAAAAAATCA
257 AGGGATGAACTTTGATTTAAAGGAAAATA-GGCAAAGAAAAGATTTCCATGC-AAAAGAAAATCA
* * *
2528379 TCAGTATCATTTATCCAAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGAT
320 TCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGAT
*
2528444 CATTACTAGAATCCAAGTTTGTCTCATTTG-AG-ACGTGAACTTAGACTTTACAAAAAATAGTGG
385 CATTACTAGAATCCAAGTTTGTCTCATTTGAAGCAC--GAACTTAGACTTTACAAAAAATGGTGG
* * *
2528507 GAAAAAAACCTTTCTTACAAAACGAAAG
448 GAAAAAAGCCTTTCCTGCAAAACGAAAG
** *
2528535 CATCAATATGATGTATCCTAAAGAGAAGAGAATGTTTATGGTGGCTAAT-TCAGAAAAGAAT-GG
1 CATCAATATGATGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTAATCT-AGAAAAGAATGGG
*
2528598 GATTAGTATGAGTATTCATGTCTT-TCATATTTAAGAGACAAACTTTGATTCTATCAAACACAGT
65 GATTAGTATGAGTATTCATGT-TTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACAGT
* *
2528662 GGAAGAAAAAGTGTTTCTTGCGAC-CCTAAAGCATCAATTTCATGTATCCTAATGAAGGGAATG-
129 GGAAGGAAAAGTTTTTCTTGCGACACC-AAAGCATCAATTTCATGTATCCTAATGAAGGGAATGA
* * * ** * * * *
2528725 GGTTTGTC-TCCCAATCTC-ATAAAGAAGGGAGATTGTTACAAGCATTGATGCTTGTCTTATTTA
193 GTTTTGGCTTCACAATCTCGA-AAAGAACTGAGATAGTTACGAGAATCGATGCTTGTCTTATTTA
* * **
2528788 AGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAATTAAATCAT
257 AGGGATGAACTTTGATTTAAAGGAAAATA-GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCAT
* * * ***
2528853 CAATTTCTTTTATCCTAATGAGGGGAATGCATTTATAGTGCCTAATCACAAAATGAGA-GAAGAT
321 CAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGA-ATGAAGAT
* * * *
2528917 CATTACTAGAATCCAAGTTTGTCTCGTTTGAGGCACGAACTTAAACTTTATAAAAAATGGTGGGA
385 CATTACTAGAATCCAAGTTTGTCTCATTTGAAGCACGAACTTAGACTTTACAAAAAATGGTGGGA
*
2528982 AAAAAGCCTTTCCTGCAAAATGAAAG
450 AAAAAGCCTTTCCTGCAAAACGAAAG
* * * *
2529008 CATCAATATGATGTATCCT-AA-TG-AGACAATGTTCATGGTGCCTAATCTGGAAAAGAATGGGG
1 CATCAATATGATGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTAATCTAGAAAAGAATGGGG
* * * * *
2529070 ATTAGTATAAGTATTCATGTTTGTCTTATTTAAGAGACTAACTTTGATTCTATTAAAAACGGTGG
66 ATTAGTATGAGTATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGG
* * * * *
2529135 AAGGAAAAGTTTTTCTTGTGACATCAAATCATCAATGTCATGTATCCTAATAAAGGGAAT-ATGT
131 AAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGA-GT
* * * * *
2529199 TTTGGCTTCATAATCTTGAAAAGAACTGAGACAATTACGAGAATCGATTCTTGTCTTATTTAAGG
195 TTTGGCTTCACAATCTCGAAAAGAACTGAGATAGTTACGAGAATCGATGCTTGTCTTATTTAAGG
* * * * * *
2529264 TATGAACATCGTTTTAAAGGAAAATAGGCAAAGAAAAGA-TTCTAATGCAAAAGGAAATCATCAA
260 GATGAACTTTGATTTAAAGGAAAATAGGCAAAGAAAAGATTTC-CATGCAAAAGAAAATCATCAA
* * *
2529328 TATCATTTATCCTAATAAGGAGAATATGTTTATAGTGCATATTCACAAAATGAATGAAGATCATT
324 TATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATT
* ** * * *
2529393 GCTAGAATCCAAGTTCATTTCATTTGAAGCACGAGCTTAGACTTTACCAAAAATGGTGGGAAAAA
389 ACTAGAATCCAAGTTTGTCTCATTTGAAGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAA
* **
2529458 AGCCTTTCTTGTGAAACGAAAG
454 AGCCTTTCCTGCAAAACGAAAG
* * * * *
2529480 CCTTAATATGATGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTTATCCAGAAAACAATGGGG
1 CATCAATATGATGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTAATCTAGAAAAGAATGGGG
* ** * * *
2529545 ATTAGTATGAGTATTTATGTTTGTTTTATTTAAGAGATAAACTTTAATTCTGTCAAAAACAGTGG
66 ATTAGTATGAGTATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGG
* * * * *
2529610 AAGGAAAATTTTTTCTTGCGACATCAATGCAAT-AATTTCATATCTCCTAATGAAGGGAATGAGT
131 AAGGAAAAGTTTTTCTTGCGACACCAAAGC-ATCAATTTCATGTATCCTAATGAAGGGAATGAGT
* * *
2529674 TTTGGCTTCACAATGC-CGAAAAGAACTGAGATAGTTACGAGAATCGATTCTTGTTTTTTTTAAG
195 TTTGGCTTCACAAT-CTCGAAAAGAACTGAGATAGTTACGAGAATCGATGCTTGTCTTATTTAAG
* *
2529738 GGATGAACTTTGATTTAAAGGAAAATAGAGCAAAGAAAAGATTTCCATTGCAAAAGAAAATTATA
259 GGATGAACTTTGATTTAAAGGAAAATAG-GCAAAGAAAAGATTTCCA-TGCAAAAGAAAATCATC
* * *
2529803 AATATTATTTATCCTAATGAGGAGAATATGTTTATATTGCCTAATCACAAAATGAATGAATATCA
322 AATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
* * * * * *
2529868 TTACTAAAATCCATGTTTGTCTCTTTTGAAGTACGAACTTAGACTTTGCAAAAAATGGTAGGAAA
387 TTACTAGAATCCAAGTTTGTCTCATTTGAAGCACGAACTTAGACTTTACAAAAAATGGTGGGAAA
*
2529933 AAAGCCTTTCCTGCAAAATGAAAG
452 AAAGCCTTTCCTGCAAAACGAAAG
* * * * *
2529957 CATCAATATGATCTATCATGAAGAGAAGACTATGTTTATGGTGCCTAATCTGGAAATGAATGGGG
1 CATCAATATGATGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTAATCTAGAAAAGAATGGGG
*
2530022 ATTAGTATGAGTATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTATATCAAAAAC-GTTG
66 ATTAGTATGAGTATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACAG-TG
* * *
2530086 GAAGGAAAAGTTTTTCTTACGACACCAAAGCATCAATTTCATGTATCCTAAGGAAGGGAATGTGT
130 GAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGAGT
2530151 TTTGGCT
195 TTTGGCT
2530158 CCGATGCTTG
Statistics
Matches: 1385, Mismatches: 207, Indels: 62
0.84 0.13 0.04
Matches are distributed among these distances:
470 31 0.02
471 115 0.08
472 184 0.13
473 231 0.17
474 99 0.07
475 332 0.24
476 69 0.05
477 324 0.23
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (475 bp):
CATCAATATGATGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTAATCTAGAAAAGAATGGGG
ATTAGTATGAGTATTCATGTTTGTCATATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGG
AAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAATGAAGGGAATGAGTT
TTGGCTTCACAATCTCGAAAAGAACTGAGATAGTTACGAGAATCGATGCTTGTCTTATTTAAGGG
ATGAACTTTGATTTAAAGGAAAATAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATA
TCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC
TAGAATCCAAGTTTGTCTCATTTGAAGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAG
CCTTTCCTGCAAAACGAAAG
Found at i:2531412 original size:478 final size:474
Alignment explanation
Indices: 2530426--2531725 Score: 1679
Period size: 478 Copynumber: 2.7 Consensus size: 474
2530416 AAAGAGAAGA
* * *
2530426 CTATCAAAAACAATGGAAGAAAAAGTTTTTCTTGCGACATCAAAGCATCAATGTCATGTATCCTA
1 CTATCAAAAACGATGGAAGGAAAAGTTTTTCTTGCGACATCAAAGCATCAATTTCATGTATCCTA
* *
2530491 ATGAAGGGATTGTGATTTGGCTTCACAATCTTGAAAAGAATAGAGATAGTTACGAGAATCGATTC
66 ATGAAGGGAATGTG-TTTGGCTTCACAATCTTGAAAAGAAT-GAGATAGTTACGAGAATCGATGC
* * * * *
2530556 TTGTCTTATTT-AAGGTATGAACATCGTTTTAAAGGAAAATA-GGCAAAGAAAAGA-TTCTAATG
129 TTGTCTTATTTAAAAG-ATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTC-CATG
* * *
2530618 CAAAAGGAAATCATCAATATCATTTATCCTAATAAGGAGAATATGTTTATAGTGCCTATTCACAA
192 CAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCACAA
* * *
2530683 AATGAATGAAGATCATTGCTAGAATCCAAGTTTGTCTCATTTGAAGCATGAACATAGACTTTACA
257 AATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACATAGACTTTACA
* * *
2530748 AAAAATGGTGGGAAAAAAGCCTTTCTTGCAATACGAAAGCATCAATATGATGTATCCTAAAGAGA
322 AAAAATGATGGGAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAATACGATGTATCCTAAAGAGA
* * * * * *
2530813 GGACTATGTTTATGGTGCCTTATCTGGAAAATAATGGGAGTTAGTATGAGTATCCATGTTTGTCT
387 AGACTACGTTTATAGTGCCTTATCTGGAAAAGAATGGGAGTTAGTATGAGTATCCATGTTTATCA
*
2530878 TATTTAAGAGACAAACTTTGATT
452 TATTTAAGAGAAAAACTTTGATT
* * *
2530901 CTATAAAAAACGATGGAAGGGAAAGTTTTTCTTGCGACATCAAAGCATCAATTTCATGTCTCCTA
1 CTATCAAAAACGATGGAAGGAAAAGTTTTTCTTGCGACATCAAAGCATCAATTTCATGTATCCTA
* *
2530966 ATGAAGGGAATGTGTTTTGGCTTCACAATCTTGAAAAGCACTGAGACAGTTACGAGAATCGATGC
66 ATGAAGGGAATGTG-TTTGGCTTCACAATCTTGAAAAG-AATGAGATAGTTACGAGAATCGATGC
* *
2531031 TTGTATTTTTTAAAAGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCA
129 TTGTCTTATTTAAAAGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGC-
* * * * * *
2531096 AAAAAAAAATCATCAATACCTTTTATCCTAATGAGAAGAATGCGTTTATAGTGCCTAATCACAAA
193 AAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCACAAA
* * * * *
2531161 ATAAATGAAGATCATTACTAGAATCCACGTTTATCTCATTTGAGGCACGAACCTAGGCTTTA-AA
258 ATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACATAGACTTTACAA
** * * *
2531225 ACATTTGATGGGAAAAAAGCCTTTTCTTGCAAAATGAAAGTATCAATGCGATGTATCCTAAAGAG
323 A-AAATGATGGGAAAAAAGCC-TTTCTTGCAAAACGAAAGCATCAATACGATGTATCCTAAAGAG
* * *
2531290 AAGACTACGTTTATATTGCCTTATCTTGAAAAGAATGGG-GATTAGTATGAGTATTCATGTTTAT
386 AAGACTACGTTTATAGTGCCTTATCTGGAAAAGAATGGGAG-TTAGTATGAGTATCCATGTTTAT
2531354 CATATTTAAGAGAAAAACTTTGATT
450 CATATTTAAGAGAAAAACTTTGATT
* * * * *
2531379 TTATCAAAAACGGTGGAAGGAAAAGTGTTTCTTGCGACCTCAAAGCATCAATTTCTTGTATCCTA
1 CTATCAAAAACGATGGAAGGAAAAGTTTTTCTTGCGACATCAAAGCATCAATTTCATGTATCCTA
* * * * * * * *
2531444 TTGAAGGAAATGTGTTTGTC-TCCCAATC-TCATAAAGAAAGGAGATTGTTACGAGAATTGATGC
66 ATGAAGGGAATGTGTTTGGCTTCACAATCTTGA-AAAG-AATGAGATAGTTACGAGAATCGATGC
** * * *
2531507 TTGTCTTATTTAAGTGATGAACTTTGATTTTTAAGGAAATTAGGGCAAAGAAAAGATTTTCATGC
129 TTGTCTTATTTAAAAGATGAACTTTGA-TTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGC
* * * *
2531572 AAAAGAAAATCATCAATATCATTCATCCTAATCAGGAGAATGTGTTCATAGTACCTAATC-CAAA
193 AAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCAC-AA
** * *
2531636 AATGAATGAAG---ATTACTAGAATCCAAGTTTGTCTCATTTGAGGCTTGAACTTAAACTTTACA
257 AATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACATAGACTTTACA
2531698 AAAAAT-AGTGGGAAAAAAGCCTTTCTTG
322 AAAAATGA-TGGGAAAAAAGCCTTTCTTG
2531726 TGAAATGAAG
Statistics
Matches: 714, Mismatches: 98, Indels: 29
0.85 0.12 0.03
Matches are distributed among these distances:
472 8 0.01
473 57 0.08
474 3 0.00
475 150 0.21
476 143 0.20
477 169 0.24
478 184 0.26
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (474 bp):
CTATCAAAAACGATGGAAGGAAAAGTTTTTCTTGCGACATCAAAGCATCAATTTCATGTATCCTA
ATGAAGGGAATGTGTTTGGCTTCACAATCTTGAAAAGAATGAGATAGTTACGAGAATCGATGCTT
GTCTTATTTAAAAGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAA
AGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG
AATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACATAGACTTTACAAAAA
ATGATGGGAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAATACGATGTATCCTAAAGAGAAGAC
TACGTTTATAGTGCCTTATCTGGAAAAGAATGGGAGTTAGTATGAGTATCCATGTTTATCATATT
TAAGAGAAAAACTTTGATT
Found at i:2533415 original size:42 final size:42
Alignment explanation
Indices: 2533356--2533478 Score: 194
Period size: 42 Copynumber: 2.9 Consensus size: 42
2533346 AAAAGAAAGA
*
2533356 AGAGAGAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAGT
1 AGAGAGAGGAGGGATGATAGGAGGAGAGACAAGAGAGATAGT
*
2533398 AGAGATAGGAGGGATGATAGGAGGAGAGACAAGAGAGATAGT
1 AGAGAGAGGAGGGATGATAGGAGGAGAGACAAGAGAGATAGT
* *
2533440 AGAGAGAGGAGGGATGACAGGAGGAGGAGAGAAGA-AGAT
1 AGAGAGAGGAGGGATGATAGGAGGA-GAGACAAGAGAGAT
2533479 GGAAGAGTGA
Statistics
Matches: 75, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
42 67 0.89
43 8 0.11
ACGTcount: A:0.42, C:0.02, G:0.46, T:0.09
Consensus pattern (42 bp):
AGAGAGAGGAGGGATGATAGGAGGAGAGACAAGAGAGATAGT
Found at i:2537236 original size:79 final size:79
Alignment explanation
Indices: 2537069--2537272 Score: 223
Period size: 79 Copynumber: 2.6 Consensus size: 79
2537059 GAGATAATAA
* * ** * * *
2537069 CGGGGTTGGAGTGTTCCCTT-GAAAATAACGGGGCTGGAGTATCCCCGGTTGTGAGGAATCGATG
1 CGGGGTTGGAGT-ATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATG
*
2537133 ATTAGAAAAAAAAAT
65 ATTAGAAAAAAAAAC
*
2537148 CGGGATTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAAT-A
1 CGGGGTTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATGA
* ** * *
2537212 TTTTGGGAATAAAGC
66 -TTAGAAAAAAAAAC
* * *
2537227 CGGGGTTGGAGTATCCCCTCGGAAGTAACGGGGTTGGAGTATCCCC
1 CGGGGTTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCC
2537273 GATGAAATAA
Statistics
Matches: 105, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
78 7 0.07
79 98 0.93
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (79 bp):
CGGGGTTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATGA
TTAGAAAAAAAAAC
Found at i:2537267 original size:28 final size:28
Alignment explanation
Indices: 2537227--2537298 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
2537217 GGAATAAAGC
** *
2537227 CGGGGTTGGAGTATCCCCTCGGAAGTAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
2537255 CGGGGTTGGAGTATCCCCGATGAAATAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
2537283 CGAGGTTGGAGTATCC
1 CGGGGTTGGAGTATCC
2537299 TCGATTGTGA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.24, C:0.19, G:0.35, T:0.22
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGAGGAAATAA
Found at i:2540177 original size:55 final size:55
Alignment explanation
Indices: 2540044--2543330 Score: 3407
Period size: 55 Copynumber: 58.0 Consensus size: 55
2540034 TGGGAAGGTT
* * *
2540044 TGCCACTAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGAGGACTGGAA-A
1 TGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGAAAGA
* *
2540098 TGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCTTGCTCTTTGAGGACTGAAAGG
1 TGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGAAAGA
** *
2540153 TGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTGAAAAA
1 TGCCACCAACTTGTGTGGGCTTTG-AAAG-----GTGTCCTGCTCTTTGAGGACTGAAAGA
* * * * *
2540214 TGCCACCAACCTGTGTGGGCTTTAAAAGGTGTCCTACTCTTTGAGGATTGAAAAA
1 TGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGAAAGA
* *
2540269 TGCCACCAACTTGTGTGGGCTTT-AAGAGGTGAT-CTGCTCTTTGGGGACTGAAAAA
1 TGCCACCAACTTGTGTGGGCTTTGAA-AGGTG-TCCTGCTCTTTGAGGACTGAAAGA
* * *
2540324 TGCCACCAACTTGGGTGGGCTTTGAAAGGTGTCCTGCTCTTTGGGGACTG-AAGG
1 TGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGAAAGA
* * * *
2540378 TGCCACCACCTTTTGTGGGCTTT-AAGAGGTGTCCTGCTCTTTGAGGACTGGAAGG
1 TGCCACCAACTTGTGTGGGCTTTGAA-AGGTGTCCTGCTCTTTGAGGACTGAAAGA
* ** *
2540433 CGCCACCAACTTGTGTGGGCTTTGAAAAGACAAAGCATCCTGCTCTTTGAGGACTGAAAGG
1 TGCCACCAACTTGTGTGGGCTTTG-AAAG-----GTGTCCTGCTCTTTGAGGACTGAAAGA
** *
2540494 TGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTGAAAAA
1 TGCCACCAACTTGTGTGGGCTTTG-AAAG-----GTGTCCTGCTCTTTGAGGACTGAAAGA
* * *
2540555 TGCCACCAACCTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGAGGATTGGAAA-A
1 TGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACT-GAAAGA
* *
2540610 TGCCACCAACTTGTGTGGGCTTT-AAGAGGTGAT-CTGCTCTTTGGGGACTGAAAAA
1 TGCCACCAACTTGTGTGGGCTTTGAA-AGGTG-TCCTGCTCTTTGAGGACTGAAAGA
* * *
2540665 TGCCACCAACTTGGGTGGGCTTTGAAAGGTGTCCTGCTCTTTGGGGACTGAAAGG
1 TGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGAAAGA
* * *
2540720 TGCCACCAACTTTTGTGGGCTTT-AAGAGGTGTCCTGCTCTTTGAGGACTGGAAGG
1 TGCCACCAACTTGTGTGGGCTTTGAA-AGGTGTCCTGCTCTTTGAGGACTGAAAGA
* ** *
2540775 CGCCACCAACTTGTGTGGGCTTTGAAAAGACAAAGCATCCTGCTCTTTGAGGACTGAAAGG
1 TGCCACCAACTTGTGTGGGCTTTG-AAAG-----GTGTCCTGCTCTTTGAGGACTGAAAGA
** *
2540836 TGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTGAAAAA
1 TGCCACCAACTTGTGTGGGCTTTG-AAAG-----GTGTCCTGCTCTTTGAGGACTGAAAGA
* * *
2540897 TGCCACCAACCTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGAGGATTGGAAA-A
1 TGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACT-GAAAGA
* *
2540952 TGCCACCAACTTGTGTGGGCTTT-AAGAGGTGAT-CTGCTCTTTGGGGACTGAAAAA
1 TGCCACCAACTTGTGTGGGCTTTGAA-AGGTG-TCCTGCTCTTTGAGGACTGAAAGA
* * *
2541007 TGCCACCAACTTGGGTGGGCTTTGAAAGGTGTCCTGCTCTTTGGGGACTGAAAGG
1 TGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGAAAGA
* * *
2541062 TGCCACCAACTTTTGTGGGCTTT-AAGAGGTGTCCTGCTCTTTGAGGACTGGAAGG
1 TGCCACCAACTTGTGTGGGCTTTGAA-AGGTGTCCTGCTCTTTGAGGACTGAAAGA
* ** *
2541117 CGCCACCAACTTGTGTGGGCTTTGAAAAGACAAAGCATCCTGCTCTTTGAGGACTGAAAGG
1 TGCCACCAACTTGTGTGGGCTTTG-AAAG-----GTGTCCTGCTCTTTGAGGACTGAAAGA
** *
2541178 TGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTGAAAAA
1 TGCCACCAACTTGTGTGGGCTTTG-AAAG-----GTGTCCTGCTCTTTGAGGACTGAAAGA
* * *
2541239 TGCCACCAACCTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGAGGATTGGAAA-A
1 TGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACT-GAAAGA
* *
2541294 TGCCACCAACTTGTGTGGGCTTT-AAGAGGTGAT-CTGCTCTTTGGGGACTGAAAAA
1 TGCCACCAACTTGTGTGGGCTTTGAA-AGGTG-TCCTGCTCTTTGAGGACTGAAAGA
* * * *
2541349 TACCACCAACTTGGGTGGGCTTTGAAAGGTGTCCTGCTCTTTGGGGACTGAAAGG
1 TGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGAAAGA
* * *
2541404 TGCCACCAACTTTTGTGGGCTTT-AAGAGGTGTCCTGCTCTTTGAGGACTGGAAGG
1 TGCCACCAACTTGTGTGGGCTTTGAA-AGGTGTCCTGCTCTTTGAGGACTGAAAGA
* ** *
2541459 CGCCACCAACTTGTGTGGGCTTTGAAAAGACAAAGCATCCTGCTCTTTGAGGACTGAAAGG
1 TGCCACCAACTTGTGTGGGCTTTG-AAAG-----GTGTCCTGCTCTTTGAGGACTGAAAGA
* ** *
2541520 TACCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTGAAAAA
1 TGCCACCAACTTGTGTGGGCTTTG-AAAG-----GTGTCCTGCTCTTTGAGGACTGAAAGA
* * *
2541581 TGCCACCAACCTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGAGGATTGGAAA-A
1 TGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACT-GAAAGA
* * *
2541636 TGCCACCAACTTGTGTGGGCTTT-AAGAGGTGAT-CTGCTCTTTGGGGAATGAAAAA
1 TGCCACCAACTTGTGTGGGCTTTGAA-AGGTG-TCCTGCTCTTTGAGGACTGAAAGA
* * *
2541691 TGCCACCAACTTGGGTGGGCTTTGAAAGGTGTCCTGCTCTTTGGGGACTGAAAGG
1 TGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGAAAGA
* * *
2541746 TGCCACCAACTTTTGTGGGCTTT-AAGAGGTGTCCTGCTCTTTGAGGACTGGAAGG
1 TGCCACCAACTTGTGTGGGCTTTGAA-AGGTGTCCTGCTCTTTGAGGACTGAAAGA
* ** *
2541801 CGCCACCAACTTGTGTGGGCTTTGAAAAGACAAAGCATCCTGCTCTTTGAGGACTGAAAGG
1 TGCCACCAACTTGTGTGGGCTTTG-AAAG-----GTGTCCTGCTCTTTGAGGACTGAAAGA
** *
2541862 TGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTGAAAAA
1 TGCCACCAACTTGTGTGGGCTTTG-AAAG-----GTGTCCTGCTCTTTGAGGACTGAAAGA
* * *
2541923 TGCCACCAACCTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGAGGATTGGAAA-A
1 TGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACT-GAAAGA
* *
2541978 TGCCACCAACTTGTGTGGGCTTT-AAGAGGTGAT-CTGCTCTTTGGGGACTGAAAAA
1 TGCCACCAACTTGTGTGGGCTTTGAA-AGGTG-TCCTGCTCTTTGAGGACTGAAAGA
* * *
2542033 TGCCACCAACTTGGGTGGGCTTTGAAAGGTGTCCTGCTCTTTGGGGACTGAAAGG
1 TGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGAAAGA
* * *
2542088 TGCCACCAACTTTTGTGGGCTTT-AAGAGGTGTCCTGCTCTTTGAGGACTGGAAGG
1 TGCCACCAACTTGTGTGGGCTTTGAA-AGGTGTCCTGCTCTTTGAGGACTGAAAGA
* ** *
2542143 CGCCACCAACTTGTGTGGGCTTTGAAAAGACAAAGCATCCTGCTCTTTGAGGACTGAAAGG
1 TGCCACCAACTTGTGTGGGCTTTG-AAAG-----GTGTCCTGCTCTTTGAGGACTGAAAGA
** *
2542204 TGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTGAAAAA
1 TGCCACCAACTTGTGTGGGCTTTG-AAAG-----GTGTCCTGCTCTTTGAGGACTGAAAGA
* * *
2542265 TGCCACCAACCTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGAGGATTGGAAA-A
1 TGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACT-GAAAGA
* *
2542320 TGCCACCAACTTGTGTGGGCTTT-AAGAGGTGAT-CTGCTCTTTGGGGACTGAAAAA
1 TGCCACCAACTTGTGTGGGCTTTGAA-AGGTG-TCCTGCTCTTTGAGGACTGAAAGA
* * *
2542375 TGCCACCAACTTGGGTGGGCTTTGAAAGGTGTCCTGCTCTTTGGGGACTGAAAGG
1 TGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGAAAGA
* * *
2542430 TGCCACCAACTTTTGTGGGCTTT-AAGAGGTGTCCTGCTCTTTGAGGACTGGAAGG
1 TGCCACCAACTTGTGTGGGCTTTGAA-AGGTGTCCTGCTCTTTGAGGACTGAAAGA
* ** *
2542485 CGCCACCAACTTGTGTGGGCTTTGAAAAGACAAAGCATCCTGCTCTTTGAGGACTGAAAGG
1 TGCCACCAACTTGTGTGGGCTTTG-AAAG-----GTGTCCTGCTCTTTGAGGACTGAAAGA
** *
2542546 TGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTGAAAAA
1 TGCCACCAACTTGTGTGGGCTTTG-AAAG-----GTGTCCTGCTCTTTGAGGACTGAAAGA
* * *
2542607 TGCCACCAACCTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGAGGATTGGAAA-A
1 TGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACT-GAAAGA
* *
2542662 TGCCACCAACTTGTGTGGGCTTT-AAGAGGTGAT-CTGCTCTTTGGGGACTGAAAAA
1 TGCCACCAACTTGTGTGGGCTTTGAA-AGGTG-TCCTGCTCTTTGAGGACTGAAAGA
* * *
2542717 TGCCACCAACTTGGGTGGGCTTTGAAAGGTGTCCTGCTCTTTGGGGACTGAAAGG
1 TGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGAAAGA
* * *
2542772 TGCCACCAACTTTTGTGGGCTTT-AAGAGGTGTCCTGCT-TTTGAGGACTGGAAGG
1 TGCCACCAACTTGTGTGGGCTTTGAA-AGGTGTCCTGCTCTTTGAGGACTGAAAGA
* ** *
2542826 CGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTGAAAAA
1 TGCCACCAACTTGTGTGGGCTTTG-AAAG-----GTGTCCTGCTCTTTGAGGACTGAAAGA
* * *
2542887 TGCCACCAACCTGTGTGGGCTTT-AAGAGGTGAT-CTGCTCTTTGGGGACTGAAAAA
1 TGCCACCAACTTGTGTGGGCTTTGAA-AGGTG-TCCTGCTCTTTGAGGACTGAAAGA
* * * *
2542942 TACCACCAACTTGGGTGGGCTTTGAAAGGTGTCCTGCTCTTTGGGGACTGAAAGG
1 TGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGAAAGA
* * *
2542997 TGCCACCAACTTTTGTGGGCTTT-AAGAGGTGTCCTGCT-TTTGAGGACTGGAAGG
1 TGCCACCAACTTGTGTGGGCTTTGAA-AGGTGTCCTGCTCTTTGAGGACTGAAAGA
* ** * *
2543051 CGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGAACTGAAAAA
1 TGCCACCAACTTGTGTGGGCTTTG-AAAG-----GTGTCCTGCTCTTTGAGGACTGAAAGA
* * *
2543112 TGCCACCAACCTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGAGGATTGGAAA-A
1 TGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACT-GAAAGA
* *
2543167 TGCCACCGACTTGGGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGGAAA-A
1 TGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACT-GAAAGA
* * *
2543222 TGCCACCAACTTATGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGGAAGG
1 TGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGAAAGA
* * *
2543277 CGCCACCAACTTGTGTGTGCTTT-AAGAGGTGTCCTGCTCTTTGGGGACTGAAAG
1 TGCCACCAACTTGTGTGGGCTTTGAA-AGGTGTCCTGCTCTTTGAGGACTGAAAG
2543331 GTGGAAAGAG
Statistics
Matches: 2845, Mismatches: 253, Indels: 269
0.84 0.08 0.08
Matches are distributed among these distances:
53 2 0.00
54 238 0.08
55 1624 0.57
56 81 0.03
57 14 0.00
59 2 0.00
60 54 0.02
61 830 0.29
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (55 bp):
TGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGAAAGA
Found at i:2540732 original size:26 final size:26
Alignment explanation
Indices: 2540648--2540732 Score: 64
Period size: 26 Copynumber: 3.2 Consensus size: 26
2540638 GTGATCTGCT
**
2540648 CTTTGGGGACTGAAAAATGCCACCAA
1 CTTTGGGGACTGAAAGGTGCCACCAA
* * ** *
2540674 CTTGGGTGGGCTTTGAAAGGTGTCCTGC-T
1 CTTTGG-GGAC--TGAAAGGTG-CCACCAA
2540703 CTTTGGGGACTGAAAGGTGCCACCAA
1 CTTTGGGGACTGAAAGGTGCCACCAA
2540729 CTTT
1 CTTT
2540733 TGTGGGCTTT
Statistics
Matches: 42, Mismatches: 12, Indels: 10
0.66 0.19 0.16
Matches are distributed among these distances:
25 3 0.07
26 18 0.43
27 3 0.07
28 3 0.07
29 12 0.29
30 3 0.07
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.27
Consensus pattern (26 bp):
CTTTGGGGACTGAAAGGTGCCACCAA
Found at i:2540930 original size:342 final size:342
Alignment explanation
Indices: 2540044--2543319 Score: 5678
Period size: 342 Copynumber: 9.6 Consensus size: 342
2540034 TGGGAAGGTT
* * * **
2540044 TGCCACTAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGAGGACTGGAA-ATGCCACCAAC
1 TGCCACCAACTTTTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAGGCGCCACCAAC
** *
2540108 TTGTGTGGGCTTTG-AAAG-----GTGTCTTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGT
66 TTGTGTGGGCTTTGAAAAGACAAAGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGT
2540167 GTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGG
131 GTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGG
* *
2540232 GCTTTAAAAGGTGTCCTACTCTTTGAGGATTGAAAAATGCCACCAACTTGTGTGGGCTTTAAGAG
196 GCTTTAAAAGGTGTCCTGCTCTTTGAGGATTGGAAAATGCCACCAACTTGTGTGGGCTTTAAGAG
2540297 GTGATCTGCTCTTTGGGGACTGAAAAATGCCACCAACTTGGGTGGGCTTTGAAAGGTGTCCTGCT
261 GTGATCTGCTCTTTGGGGACTGAAAAATGCCACCAACTTGGGTGGGCTTTGAAAGGTGTCCTGCT
2540362 CTTTGGGGACTG-AAGG
326 CTTTGGGGACTGAAAGG
*
2540378 TGCCACCACCTTTTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAGGCGCCACCAAC
1 TGCCACCAACTTTTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAGGCGCCACCAAC
2540443 TTGTGTGGGCTTTGAAAAGACAAAGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGT
66 TTGTGTGGGCTTTGAAAAGACAAAGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGT
2540508 GTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGG
131 GTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGG
2540573 GCTTTAAAAGGTGTCCTGCTCTTTGAGGATTGGAAAATGCCACCAACTTGTGTGGGCTTTAAGAG
196 GCTTTAAAAGGTGTCCTGCTCTTTGAGGATTGGAAAATGCCACCAACTTGTGTGGGCTTTAAGAG
2540638 GTGATCTGCTCTTTGGGGACTGAAAAATGCCACCAACTTGGGTGGGCTTTGAAAGGTGTCCTGCT
261 GTGATCTGCTCTTTGGGGACTGAAAAATGCCACCAACTTGGGTGGGCTTTGAAAGGTGTCCTGCT
2540703 CTTTGGGGACTGAAAGG
326 CTTTGGGGACTGAAAGG
2540720 TGCCACCAACTTTTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAGGCGCCACCAAC
1 TGCCACCAACTTTTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAGGCGCCACCAAC
2540785 TTGTGTGGGCTTTGAAAAGACAAAGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGT
66 TTGTGTGGGCTTTGAAAAGACAAAGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGT
2540850 GTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGG
131 GTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGG
2540915 GCTTTAAAAGGTGTCCTGCTCTTTGAGGATTGGAAAATGCCACCAACTTGTGTGGGCTTTAAGAG
196 GCTTTAAAAGGTGTCCTGCTCTTTGAGGATTGGAAAATGCCACCAACTTGTGTGGGCTTTAAGAG
2540980 GTGATCTGCTCTTTGGGGACTGAAAAATGCCACCAACTTGGGTGGGCTTTGAAAGGTGTCCTGCT
261 GTGATCTGCTCTTTGGGGACTGAAAAATGCCACCAACTTGGGTGGGCTTTGAAAGGTGTCCTGCT
2541045 CTTTGGGGACTGAAAGG
326 CTTTGGGGACTGAAAGG
2541062 TGCCACCAACTTTTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAGGCGCCACCAAC
1 TGCCACCAACTTTTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAGGCGCCACCAAC
2541127 TTGTGTGGGCTTTGAAAAGACAAAGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGT
66 TTGTGTGGGCTTTGAAAAGACAAAGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGT
2541192 GTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGG
131 GTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGG
2541257 GCTTTAAAAGGTGTCCTGCTCTTTGAGGATTGGAAAATGCCACCAACTTGTGTGGGCTTTAAGAG
196 GCTTTAAAAGGTGTCCTGCTCTTTGAGGATTGGAAAATGCCACCAACTTGTGTGGGCTTTAAGAG
*
2541322 GTGATCTGCTCTTTGGGGACTGAAAAATACCACCAACTTGGGTGGGCTTTGAAAGGTGTCCTGCT
261 GTGATCTGCTCTTTGGGGACTGAAAAATGCCACCAACTTGGGTGGGCTTTGAAAGGTGTCCTGCT
2541387 CTTTGGGGACTGAAAGG
326 CTTTGGGGACTGAAAGG
2541404 TGCCACCAACTTTTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAGGCGCCACCAAC
1 TGCCACCAACTTTTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAGGCGCCACCAAC
*
2541469 TTGTGTGGGCTTTGAAAAGACAAAGCATCCTGCTCTTTGAGGACTGAAAGGTACCACCAACTTGT
66 TTGTGTGGGCTTTGAAAAGACAAAGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGT
2541534 GTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGG
131 GTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGG
2541599 GCTTTAAAAGGTGTCCTGCTCTTTGAGGATTGGAAAATGCCACCAACTTGTGTGGGCTTTAAGAG
196 GCTTTAAAAGGTGTCCTGCTCTTTGAGGATTGGAAAATGCCACCAACTTGTGTGGGCTTTAAGAG
*
2541664 GTGATCTGCTCTTTGGGGAATGAAAAATGCCACCAACTTGGGTGGGCTTTGAAAGGTGTCCTGCT
261 GTGATCTGCTCTTTGGGGACTGAAAAATGCCACCAACTTGGGTGGGCTTTGAAAGGTGTCCTGCT
2541729 CTTTGGGGACTGAAAGG
326 CTTTGGGGACTGAAAGG
2541746 TGCCACCAACTTTTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAGGCGCCACCAAC
1 TGCCACCAACTTTTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAGGCGCCACCAAC
2541811 TTGTGTGGGCTTTGAAAAGACAAAGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGT
66 TTGTGTGGGCTTTGAAAAGACAAAGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGT
2541876 GTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGG
131 GTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGG
2541941 GCTTTAAAAGGTGTCCTGCTCTTTGAGGATTGGAAAATGCCACCAACTTGTGTGGGCTTTAAGAG
196 GCTTTAAAAGGTGTCCTGCTCTTTGAGGATTGGAAAATGCCACCAACTTGTGTGGGCTTTAAGAG
2542006 GTGATCTGCTCTTTGGGGACTGAAAAATGCCACCAACTTGGGTGGGCTTTGAAAGGTGTCCTGCT
261 GTGATCTGCTCTTTGGGGACTGAAAAATGCCACCAACTTGGGTGGGCTTTGAAAGGTGTCCTGCT
2542071 CTTTGGGGACTGAAAGG
326 CTTTGGGGACTGAAAGG
2542088 TGCCACCAACTTTTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAGGCGCCACCAAC
1 TGCCACCAACTTTTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAGGCGCCACCAAC
2542153 TTGTGTGGGCTTTGAAAAGACAAAGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGT
66 TTGTGTGGGCTTTGAAAAGACAAAGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGT
2542218 GTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGG
131 GTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGG
2542283 GCTTTAAAAGGTGTCCTGCTCTTTGAGGATTGGAAAATGCCACCAACTTGTGTGGGCTTTAAGAG
196 GCTTTAAAAGGTGTCCTGCTCTTTGAGGATTGGAAAATGCCACCAACTTGTGTGGGCTTTAAGAG
2542348 GTGATCTGCTCTTTGGGGACTGAAAAATGCCACCAACTTGGGTGGGCTTTGAAAGGTGTCCTGCT
261 GTGATCTGCTCTTTGGGGACTGAAAAATGCCACCAACTTGGGTGGGCTTTGAAAGGTGTCCTGCT
2542413 CTTTGGGGACTGAAAGG
326 CTTTGGGGACTGAAAGG
2542430 TGCCACCAACTTTTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAGGCGCCACCAAC
1 TGCCACCAACTTTTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAGGCGCCACCAAC
2542495 TTGTGTGGGCTTTGAAAAGACAAAGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGT
66 TTGTGTGGGCTTTGAAAAGACAAAGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGT
2542560 GTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGG
131 GTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGG
2542625 GCTTTAAAAGGTGTCCTGCTCTTTGAGGATTGGAAAATGCCACCAACTTGTGTGGGCTTTAAGAG
196 GCTTTAAAAGGTGTCCTGCTCTTTGAGGATTGGAAAATGCCACCAACTTGTGTGGGCTTTAAGAG
2542690 GTGATCTGCTCTTTGGGGACTGAAAAATGCCACCAACTTGGGTGGGCTTTGAAAGGTGTCCTGCT
261 GTGATCTGCTCTTTGGGGACTGAAAAATGCCACCAACTTGGGTGGGCTTTGAAAGGTGTCCTGCT
2542755 CTTTGGGGACTGAAAGG
326 CTTTGGGGACTGAAAGG
2542772 TGCCACCAACTTTTGTGGGCTTTAAGAGGTGTCCTGCT-TTTGAGGACTGGAAGGCGCCACCAAC
1 TGCCACCAACTTTTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAGGCGCCACCAAC
* ** *
2542836 TTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGT
66 TTGTGTGGGCTTTGAAAAGACAAAGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGT
*** * * * *
2542901 GTGGGCTTT---AAG-AGGTG-AT-CTGCTCTTTGGGGACTGAAAAATACCACCAACTTGGGTGG
131 GTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGG
* * * * *
2542960 GCTTTGAAAGGTGTCCTGCTCTTTGGGGACT-GAAAGGTGCCACCAACTTTTGTGGGCTTTAAGA
196 GCTTTAAAAGGTGTCCTGCTCTTTGAGGATTGGAAA-ATGCCACCAACTTGTGTGGGCTTTAAGA
* * *** * *
2543024 GGTG-TCCTGCT-TTTGAGGACTGGAAGGCGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGC
260 GGTGAT-CTGCTCTTTGGGGACTGAAAAATGCCACCAACTTGGGTGGGCTTTG-AAAG-----GT
* * * **
2543087 ATCCTGCTCTTTGAGAACTGAAAAA
318 GTCCTGCTCTTTGGGGACTGAAAGG
* * * * *** *
2543112 TGCCACCAACCTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGAGGATTGGAAAATGCCACCGAC
1 TGCCACCAACTTTTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAGGCGCCACCAAC
* ** * *
2543177 TTGGGTGGGCTTTG-AAAG-----GTGTCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTA
66 TTGTGTGGGCTTTGAAAAGACAAAGCATCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTG
** * *** *
2543235 TGTGGGCTTTG-AAAG-----GTGTCCTGCTCTTTGAGGACTGGAAGGCGCCACCAACTTGTGTG
130 TGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTG
* *
2543294 TGCTTTAAGAGGTGTCCTGCTCTTTG
195 GGCTTTAAAAGGTGTCCTGCTCTTTG
2543320 GGGACTGAAA
Statistics
Matches: 2850, Mismatches: 70, Indels: 43
0.96 0.02 0.01
Matches are distributed among these distances:
333 1 0.00
334 89 0.03
335 222 0.08
336 10 0.00
337 5 0.00
338 3 0.00
340 60 0.02
341 373 0.13
342 2087 0.73
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (342 bp):
TGCCACCAACTTTTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGAAGGCGCCACCAAC
TTGTGTGGGCTTTGAAAAGACAAAGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGT
GTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGG
GCTTTAAAAGGTGTCCTGCTCTTTGAGGATTGGAAAATGCCACCAACTTGTGTGGGCTTTAAGAG
GTGATCTGCTCTTTGGGGACTGAAAAATGCCACCAACTTGGGTGGGCTTTGAAAGGTGTCCTGCT
CTTTGGGGACTGAAAGG
Found at i:2541074 original size:26 final size:26
Alignment explanation
Indices: 2540990--2541074 Score: 64
Period size: 26 Copynumber: 3.2 Consensus size: 26
2540980 GTGATCTGCT
**
2540990 CTTTGGGGACTGAAAAATGCCACCAA
1 CTTTGGGGACTGAAAGGTGCCACCAA
* * ** *
2541016 CTTGGGTGGGCTTTGAAAGGTGTCCTGC-T
1 CTTTGG-GGAC--TGAAAGGTG-CCACCAA
2541045 CTTTGGGGACTGAAAGGTGCCACCAA
1 CTTTGGGGACTGAAAGGTGCCACCAA
2541071 CTTT
1 CTTT
2541075 TGTGGGCTTT
Statistics
Matches: 42, Mismatches: 12, Indels: 10
0.66 0.19 0.16
Matches are distributed among these distances:
25 3 0.07
26 18 0.43
27 3 0.07
28 3 0.07
29 12 0.29
30 3 0.07
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.27
Consensus pattern (26 bp):
CTTTGGGGACTGAAAGGTGCCACCAA
Found at i:2542100 original size:26 final size:26
Alignment explanation
Indices: 2542016--2542100 Score: 64
Period size: 26 Copynumber: 3.2 Consensus size: 26
2542006 GTGATCTGCT
**
2542016 CTTTGGGGACTGAAAAATGCCACCAA
1 CTTTGGGGACTGAAAGGTGCCACCAA
* * ** *
2542042 CTTGGGTGGGCTTTGAAAGGTGTCCTGC-T
1 CTTTGG-GGAC--TGAAAGGTG-CCACCAA
2542071 CTTTGGGGACTGAAAGGTGCCACCAA
1 CTTTGGGGACTGAAAGGTGCCACCAA
2542097 CTTT
1 CTTT
2542101 TGTGGGCTTT
Statistics
Matches: 42, Mismatches: 12, Indels: 10
0.66 0.19 0.16
Matches are distributed among these distances:
25 3 0.07
26 18 0.43
27 3 0.07
28 3 0.07
29 12 0.29
30 3 0.07
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.27
Consensus pattern (26 bp):
CTTTGGGGACTGAAAGGTGCCACCAA
Found at i:2542442 original size:26 final size:26
Alignment explanation
Indices: 2542358--2542442 Score: 64
Period size: 26 Copynumber: 3.2 Consensus size: 26
2542348 GTGATCTGCT
**
2542358 CTTTGGGGACTGAAAAATGCCACCAA
1 CTTTGGGGACTGAAAGGTGCCACCAA
* * ** *
2542384 CTTGGGTGGGCTTTGAAAGGTGTCCTGC-T
1 CTTTGG-GGAC--TGAAAGGTG-CCACCAA
2542413 CTTTGGGGACTGAAAGGTGCCACCAA
1 CTTTGGGGACTGAAAGGTGCCACCAA
2542439 CTTT
1 CTTT
2542443 TGTGGGCTTT
Statistics
Matches: 42, Mismatches: 12, Indels: 10
0.66 0.19 0.16
Matches are distributed among these distances:
25 3 0.07
26 18 0.43
27 3 0.07
28 3 0.07
29 12 0.29
30 3 0.07
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.27
Consensus pattern (26 bp):
CTTTGGGGACTGAAAGGTGCCACCAA
Found at i:2542784 original size:26 final size:26
Alignment explanation
Indices: 2542700--2542784 Score: 64
Period size: 26 Copynumber: 3.2 Consensus size: 26
2542690 GTGATCTGCT
**
2542700 CTTTGGGGACTGAAAAATGCCACCAA
1 CTTTGGGGACTGAAAGGTGCCACCAA
* * ** *
2542726 CTTGGGTGGGCTTTGAAAGGTGTCCTGC-T
1 CTTTGG-GGAC--TGAAAGGTG-CCACCAA
2542755 CTTTGGGGACTGAAAGGTGCCACCAA
1 CTTTGGGGACTGAAAGGTGCCACCAA
2542781 CTTT
1 CTTT
2542785 TGTGGGCTTT
Statistics
Matches: 42, Mismatches: 12, Indels: 10
0.66 0.19 0.16
Matches are distributed among these distances:
25 3 0.07
26 18 0.43
27 3 0.07
28 3 0.07
29 12 0.29
30 3 0.07
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.27
Consensus pattern (26 bp):
CTTTGGGGACTGAAAGGTGCCACCAA
Found at i:2543220 original size:27 final size:27
Alignment explanation
Indices: 2543190--2543274 Score: 66
Period size: 27 Copynumber: 3.1 Consensus size: 27
2543180 GGTGGGCTTT
2543190 GAAAGGTGTCCTGCTCTTTGAGGACTG
1 GAAAGGTGTCCTGCTCTTTGAGGACTG
* ** * * * *
2543217 GAAA-ATG-CCACCAACTTATGTGGGCTTT
1 GAAAGGTGTCCTGC-TCTT-TGAGGAC-TG
2543245 GAAAGGTGTCCTGCTCTTTGAGGACTG
1 GAAAGGTGTCCTGCTCTTTGAGGACTG
2543272 GAA
1 GAA
2543275 GGCGCCACCA
Statistics
Matches: 39, Mismatches: 14, Indels: 10
0.62 0.22 0.16
Matches are distributed among these distances:
25 3 0.08
26 5 0.13
27 13 0.33
28 10 0.26
29 5 0.13
30 3 0.08
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (27 bp):
GAAAGGTGTCCTGCTCTTTGAGGACTG
Found at i:2544299 original size:1 final size:1
Alignment explanation
Indices: 2544293--2544381 Score: 97
Period size: 1 Copynumber: 89.0 Consensus size: 1
2544283 CTTAAGCAAA
** * * * * *
2544293 TTTTTTTTTTTTTTGGTTTTGTTTTTTTGTTTTTTTTTTGTTTTTTTGTTTTTTTTGTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* *
2544358 TGTTTTTTTTTTTGTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTT
2544382 GAAGAGAAGG
Statistics
Matches: 72, Mismatches: 16, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
1 72 1.00
ACGTcount: A:0.00, C:0.00, G:0.10, T:0.90
Consensus pattern (1 bp):
T
Found at i:2544317 original size:19 final size:18
Alignment explanation
Indices: 2544294--2544381 Score: 113
Period size: 19 Copynumber: 4.6 Consensus size: 18
2544284 TTAAGCAAAT
2544294 TTTTTTTTTTTTTGGTTTTG
1 TTTTTTTTTTTTT--TTTTG
2544314 TTTTTTTGTTTTTTTTTTG
1 TTTTTTT-TTTTTTTTTTG
*
2544333 TTTTTTTGTTTTTTTTGTTT
1 TTTTTTT-TTTTTTTT-TTG
2544353 TTTTTTGTTTTTTTTTTTG
1 TTTTTT-TTTTTTTTTTTG
2544372 TTTTTTTTTT
1 TTTTTTTTTT
2544382 GAAGAGAAGG
Statistics
Matches: 63, Mismatches: 2, Indels: 8
0.86 0.03 0.11
Matches are distributed among these distances:
18 4 0.06
19 29 0.46
20 23 0.37
21 7 0.11
ACGTcount: A:0.00, C:0.00, G:0.10, T:0.90
Consensus pattern (18 bp):
TTTTTTTTTTTTTTTTTG
Found at i:2544325 original size:27 final size:26
Alignment explanation
Indices: 2544295--2544381 Score: 117
Period size: 25 Copynumber: 3.4 Consensus size: 26
2544285 TAAGCAAATT
2544295 TTTTTTTTTTTTGGTTTTGTTTTTTTG
1 TTTTTTTTTTTT-GTTTTGTTTTTTTG
*
2544322 TTTTTTTTTTGTTTTTTTG-TTTTTT-
1 TTTTTTTTTT-TTGTTTTGTTTTTTTG
*
2544347 TTGTTTTTTTTTGTTTT-TTTTTTTG
1 TTTTTTTTTTTTGTTTTGTTTTTTTG
2544372 TTTTTTTTTT
1 TTTTTTTTTT
2544382 GAAGAGAAGG
Statistics
Matches: 53, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
24 12 0.23
25 18 0.34
26 6 0.11
27 15 0.28
28 2 0.04
ACGTcount: A:0.00, C:0.00, G:0.10, T:0.90
Consensus pattern (26 bp):
TTTTTTTTTTTTGTTTTGTTTTTTTG
Found at i:2551187 original size:13 final size:13
Alignment explanation
Indices: 2551169--2551194 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2551159 CAATTTTTTG
2551169 TGTATCGATACAT
1 TGTATCGATACAT
2551182 TGTATCGATACAT
1 TGTATCGATACAT
2551195 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2551280 original size:20 final size:20
Alignment explanation
Indices: 2551255--2551327 Score: 96
Period size: 20 Copynumber: 3.6 Consensus size: 20
2551245 ATCTTTTTTT
2551255 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
*
2551275 ATGTATCGATACA-T-CATTTTC
1 ATGTATCGATACATTGCA---AC
2551296 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
2551316 ATGTATCGATAC
1 ATGTATCGATAC
2551328 TTTGAATTGT
Statistics
Matches: 46, Mismatches: 2, Indels: 10
0.79 0.03 0.17
Matches are distributed among these distances:
18 2 0.04
19 1 0.02
20 26 0.57
21 14 0.30
22 1 0.02
23 2 0.04
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.34
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:2551310 original size:41 final size:42
Alignment explanation
Indices: 2551233--2551327 Score: 165
Period size: 41 Copynumber: 2.3 Consensus size: 42
2551223 CTACCAAGAA
* *
2551233 ATGTATCGATACATCTTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTATTTTCATGTATCGATACATTGCAAC
2551275 ATGTATCGATACATC-ATTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTATTTTCATGTATCGATACATTGCAAC
2551316 ATGTATCGATAC
1 ATGTATCGATAC
2551328 TTTGAATTGT
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
41 36 0.71
42 15 0.29
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.39
Consensus pattern (42 bp):
ATGTATCGATACATCTATTTTCATGTATCGATACATTGCAAC
Found at i:2553798 original size:13 final size:13
Alignment explanation
Indices: 2553780--2553817 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
2553770 ATAATCACCC
*
2553780 TGTATCGATATAG
1 TGTATCGATACAG
*
2553793 TGTATCGATACAT
1 TGTATCGATACAG
2553806 TGTATCGATACA
1 TGTATCGATACA
2553818 AAGAAAAATG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.37
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:2553831 original size:20 final size:20
Alignment explanation
Indices: 2553806--2553882 Score: 66
Period size: 20 Copynumber: 3.6 Consensus size: 20
2553796 ATCGATACAT
2553806 TGTATCGATACAAAGAAAAA
1 TGTATCGATACAAAGAAAAA
* *
2553826 TGTATCGATACATAGAATTTCCAGA
1 TGTATCGATACAAAGAA-----AAA
*
2553851 TGTATCGATACACAA-AAACA
1 TGTATCGATACA-AAGAAAAA
2553871 TGTATCGATACA
1 TGTATCGATACA
2553883 TTTTGGACAT
Statistics
Matches: 47, Mismatches: 4, Indels: 12
0.75 0.06 0.19
Matches are distributed among these distances:
20 30 0.64
25 16 0.34
26 1 0.02
ACGTcount: A:0.44, C:0.16, G:0.14, T:0.26
Consensus pattern (20 bp):
TGTATCGATACAAAGAAAAA
Found at i:2557038 original size:21 final size:21
Alignment explanation
Indices: 2557009--2557053 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
2556999 AAGTTTTCAT
*
2557009 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
2557029 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
2557051 TTT
1 TTT
2557054 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:2557541 original size:16 final size:17
Alignment explanation
Indices: 2557520--2557552 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
2557510 AGCATATTAC
*
2557520 TTGCTC-ATTGTCCTTT
1 TTGCTCGATTCTCCTTT
2557536 TTGCTCGATTCTCCTTT
1 TTGCTCGATTCTCCTTT
2557553 GAGCAAAGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.06, C:0.27, G:0.12, T:0.55
Consensus pattern (17 bp):
TTGCTCGATTCTCCTTT
Found at i:2559289 original size:13 final size:13
Alignment explanation
Indices: 2559271--2559296 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2559261 CAATTTTTTG
2559271 TGTATCGATACAT
1 TGTATCGATACAT
2559284 TGTATCGATACAT
1 TGTATCGATACAT
2559297 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2559382 original size:20 final size:20
Alignment explanation
Indices: 2559357--2559429 Score: 96
Period size: 20 Copynumber: 3.6 Consensus size: 20
2559347 ATCTTTTTTT
2559357 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
*
2559377 ATGTATCGATACA-T-CATTTTC
1 ATGTATCGATACATTGCA---AC
2559398 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
2559418 ATGTATCGATAC
1 ATGTATCGATAC
2559430 TTTGAATTGT
Statistics
Matches: 46, Mismatches: 2, Indels: 10
0.79 0.03 0.17
Matches are distributed among these distances:
18 2 0.04
19 1 0.02
20 26 0.57
21 14 0.30
22 1 0.02
23 2 0.04
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.34
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:2559412 original size:41 final size:42
Alignment explanation
Indices: 2559335--2559429 Score: 165
Period size: 41 Copynumber: 2.3 Consensus size: 42
2559325 CTACCAAGAA
* *
2559335 ATGTATCGATACATCTTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTATTTTCATGTATCGATACATTGCAAC
2559377 ATGTATCGATACATC-ATTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTATTTTCATGTATCGATACATTGCAAC
2559418 ATGTATCGATAC
1 ATGTATCGATAC
2559430 TTTGAATTGT
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
41 36 0.71
42 15 0.29
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.39
Consensus pattern (42 bp):
ATGTATCGATACATCTATTTTCATGTATCGATACATTGCAAC
Found at i:2566080 original size:28 final size:28
Alignment explanation
Indices: 2566040--2566111 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
2566030 GGAATAAAGC
** *
2566040 CGGGGTTGGAGTATCCCCTCGGAAGTAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
2566068 CGGGGTTGGAGTATCCCCGATGAAATAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
2566096 CGAGGTTGGAGTATCC
1 CGGGGTTGGAGTATCC
2566112 TCGATTGTGA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.24, C:0.19, G:0.35, T:0.22
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGAGGAAATAA
Done.