Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold400
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2847997
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
File 17 of 17
Found at i:2789795 original size:48 final size:46
Alignment explanation
Indices: 2789724--2789838 Score: 149
Period size: 48 Copynumber: 2.5 Consensus size: 46
2789714 CACCATTTGT
* * * *
2789724 GACCTGGTCAAACTTTTTTCACCATTTGTTTAACTATATTGGGATTAA
1 GACCTAGTTAAACTCTTTTCACCA-TTGTTTAACTATATTGGCATT-A
*
2789772 GACCTAGTTAAACTCTTTTCACCATTGTTTAACTGTATTGGCATTA
1 GACCTAGTTAAACTCTTTTCACCATTGTTTAACTATATTGGCATTA
* *
2789818 GTCCTAGTTAAACTCCTTTCA
1 GACCTAGTTAAACTCTTTTCA
2789839 TCTCTACTTG
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
46 20 0.33
47 19 0.32
48 21 0.35
ACGTcount: A:0.26, C:0.20, G:0.13, T:0.41
Consensus pattern (46 bp):
GACCTAGTTAAACTCTTTTCACCATTGTTTAACTATATTGGCATTA
Found at i:2789838 original size:46 final size:48
Alignment explanation
Indices: 2789740--2789838 Score: 148
Period size: 46 Copynumber: 2.1 Consensus size: 48
2789730 GTCAAACTTT
* *
2789740 TTTCACCATTTGTTTAACTATATTGGGATTAAGACCTAGTTAAACTCT
1 TTTCACCATTTGTTTAACTATATTGGCATTAAGACCTAGTTAAACTCC
* *
2789788 TTTCACCA-TTGTTTAACTGTATTGGCATT-AGTCCTAGTTAAACTCC
1 TTTCACCATTTGTTTAACTATATTGGCATTAAGACCTAGTTAAACTCC
2789834 TTTCA
1 TTTCA
2789839 TCTCTACTTG
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
46 20 0.43
47 19 0.40
48 8 0.17
ACGTcount: A:0.26, C:0.19, G:0.12, T:0.42
Consensus pattern (48 bp):
TTTCACCATTTGTTTAACTATATTGGCATTAAGACCTAGTTAAACTCC
Found at i:2790114 original size:42 final size:42
Alignment explanation
Indices: 2790046--2790191 Score: 150
Period size: 42 Copynumber: 3.5 Consensus size: 42
2790036 TTATCAATCG
* * * *
2790046 TCTGCCTATCAGCTCAAACCTGGGAGACTTCTTCATCTTTCA
1 TCTGCCTGTCGGCTCAGACCTAGGAGACTTCTTCATCTTTCA
* * * * *
2790088 TCTGCCCGTTGGCTCAGTCCTAGGAGACTTCTTTAT-TAATCA
1 TCTGCCTGTCGGCTCAGACCTAGGAGACTTCTTCATCT-TTCA
* * * *
2790130 TCTGCCTGTCAGCTCAAACCTGGGAGACTTCTTCATCTTTCG
1 TCTGCCTGTCGGCTCAGACCTAGGAGACTTCTTCATCTTTCA
*
2790172 TCTACCTGTCGGCTCAGACC
1 TCTGCCTGTCGGCTCAGACC
2790192 CAAGAAACTC
Statistics
Matches: 81, Mismatches: 21, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
41 1 0.01
42 79 0.98
43 1 0.01
ACGTcount: A:0.18, C:0.31, G:0.18, T:0.33
Consensus pattern (42 bp):
TCTGCCTGTCGGCTCAGACCTAGGAGACTTCTTCATCTTTCA
Found at i:2790149 original size:84 final size:84
Alignment explanation
Indices: 2790002--2790216 Score: 295
Period size: 84 Copynumber: 2.5 Consensus size: 84
2789992 CATCTTTTTT
* * *
2790002 ATCTACCCGTTGGCTCTGTCCTGGGAGACTTCCTTTATCAATCGTCTGCCTATCAGCTCAAACCT
1 ATCTACCCGTTGGCTCAGTCCTAGGAGACTT-CTTTATCAATCATCTGCCTATCAGCTCAAACCT
2790067 GGGAGACTTCTTCATCTTTC
65 GGGAGACTTCTTCATCTTTC
* * *
2790087 ATCTGCCCGTTGGCTCAGTCCTAGGAGACTTCTTTATTAATCATCTGCCTGTCAGCTCAAACCTG
1 ATCTACCCGTTGGCTCAGTCCTAGGAGACTTCTTTATCAATCATCTGCCTATCAGCTCAAACCTG
2790152 GGAGACTTCTTCATCTTTC
66 GGAGACTTCTTCATCTTTC
* * * * * * * *
2790171 GTCTACCTGTCGGCTCAGACCCAAGAAACTCCTTTATCAATCATCT
1 ATCTACCCGTTGGCTCAGTCCTAGGAGACTTCTTTATCAATCATCT
2790217 ACTCATCGGC
Statistics
Matches: 114, Mismatches: 16, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
84 86 0.75
85 28 0.25
ACGTcount: A:0.20, C:0.30, G:0.17, T:0.33
Consensus pattern (84 bp):
ATCTACCCGTTGGCTCAGTCCTAGGAGACTTCTTTATCAATCATCTGCCTATCAGCTCAAACCTG
GGAGACTTCTTCATCTTTC
Found at i:2790267 original size:43 final size:43
Alignment explanation
Indices: 2790180--2790443 Score: 207
Period size: 43 Copynumber: 6.2 Consensus size: 43
2790170 CGTCTACCTG
* * * *
2790180 TCGGCTCAGACCCAAGAA-AC-TCCTTTATCAATCATCTACTCA
1 TCGGCTTAGACCC-AGAAGACTTCCTTTATCAATCGTCTGCCCA
* * *
2790222 TCGGCTTAGACCCAGAAGACTTTCTTTATCAATTGTTTGCCCA
1 TCGGCTTAGACCCAGAAGACTTCCTTTATCAATCGTCTGCCCA
* * *
2790265 TCGGCTTAGACCTATG-AGACTT-CTTCATCAATCGTCTGCCCG
1 TCGGCTTAGACCCA-GAAGACTTCCTTTATCAATCGTCTGCCCA
* * * * *
2790307 TCGGTTTAAACCCA-AGAGACTTCCTTTATCAATCATCTACCCG
1 TCGGCTTAGACCCAGA-AGACTTCCTTTATCAATCGTCTGCCCA
* * *
2790350 TCGGCTTAGACCCAGGAGACTTCCTTTATCAACCGTCTCCCCA
1 TCGGCTTAGACCCAGAAGACTTCCTTTATCAATCGTCTGCCCA
** * * * * * * *
2790393 TTAG-TTCAGTCCCGGGAGACGTCCTTTATTAATCGTCCGCTCA
1 TCGGCTT-AGACCCAGAAGACTTCCTTTATCAATCGTCTGCCCA
2790436 TCGGCTTA
1 TCGGCTTA
2790444 AGCCCAGGGG
Statistics
Matches: 176, Mismatches: 37, Indels: 17
0.77 0.16 0.07
Matches are distributed among these distances:
41 4 0.02
42 49 0.28
43 120 0.68
44 3 0.02
ACGTcount: A:0.23, C:0.31, G:0.16, T:0.30
Consensus pattern (43 bp):
TCGGCTTAGACCCAGAAGACTTCCTTTATCAATCGTCTGCCCA
Found at i:2790295 original size:85 final size:86
Alignment explanation
Indices: 2790180--2790381 Score: 203
Period size: 85 Copynumber: 2.4 Consensus size: 86
2790170 CGTCTACCTG
* * * * * *
2790180 TCGGCTCAGACCCAAGAAAC-TCCTTTATCAATCATCTACTCATCGGCTTAGACCC-AGAAGACT
1 TCGGCTTAGACCCAGGAGACTTCCTTCATCAATCATCTACCCATCGGCTTAAACCCAAG-AGACT
* ** * *
2790243 TTCTTTATCAATTGTTTGCCCA
65 TCCTTTATCAATCATCTACCCA
* * * * * *
2790265 TCGGCTTAGACCTATGAGACTT-CTTCATCAATCGTCTGCCCGTCGGTTTAAACCCAAGAGACTT
1 TCGGCTTAGACCCAGGAGACTTCCTTCATCAATCATCTACCCATCGGCTTAAACCCAAGAGACTT
*
2790329 CCTTTATCAATCATCTACCCG
66 CCTTTATCAATCATCTACCCA
*
2790350 TCGGCTTAGACCCAGGAGACTTCCTTTATCAA
1 TCGGCTTAGACCCAGGAGACTTCCTTCATCAA
2790382 CCGTCTCCCC
Statistics
Matches: 94, Mismatches: 20, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
85 83 0.88
86 11 0.12
ACGTcount: A:0.25, C:0.30, G:0.15, T:0.30
Consensus pattern (86 bp):
TCGGCTTAGACCCAGGAGACTTCCTTCATCAATCATCTACCCATCGGCTTAAACCCAAGAGACTT
CCTTTATCAATCATCTACCCA
Found at i:2791922 original size:163 final size:164
Alignment explanation
Indices: 2791573--2791941 Score: 406
Period size: 163 Copynumber: 2.2 Consensus size: 164
2791563 TACACTATGA
* * * ** *
2791573 ATTTTTTTAAGGGGATTTTTCTTGGTTTTTCATTTTTAAAAGTCATCAAATATTATTATTTCTCT
1 ATTTTTTTGAGGGGATTTTTCTTGGTTTTTAATTTTTAAAAGTCATCAAACACCATTATTTATCT
* * *
2791638 CATATTAATTCAGTTTTAAAAAAATAAATTCATTTTCATGAGTTTTGGATTTTTTTCCTTGAAAT
66 CATATTAATTCAGTTTTAAAAAAATAAATTCATTTTCATGAATTTTGGAATTTTTTCCTTGAAAA
* * *** * ** * *
2791703 TTACCTTTTTTTGAAATATGGTGTTTTCTACTTC
131 TCACCTTTCTCCAAAAAACCGAGTTTTCTACTCC
* * *
2791737 ATTTTTTTTAGGGGATTTTTCTT-GTTTTTAATTTTTAAAATTCATCAAACACCATTATTTATTT
1 ATTTTTTTGAGGGGATTTTTCTTGGTTTTTAATTTTTAAAAGTCATCAAACACCATTATTTATCT
* *
2791801 TATATTAATTTAGTTTT-AAAAAATAAATTCATTTTCATGAATTTT-GAATTTTTTCCTT-AAAA
66 CATATTAATTCAGTTTTAAAAAAATAAATTCATTTTCATGAATTTTGGAATTTTTTCCTTGAAAA
*
2791863 TCCCCTTTCTCCAAAAAACCGAGTTTTCTACTCC
131 TCACCTTTCTCCAAAAAACCGAGTTTTCTACTCC
* **
2791897 ATAATTATTTTCGAGGGGA-TTTTCTTTGGTCTAAAATTTTTAAAA
1 AT--TT-TTTT-GAGGGGATTTTTC-TTGGTTTTTAATTTTTAAAA
2791942 TGAATCTAAT
Statistics
Matches: 171, Mismatches: 28, Indels: 11
0.81 0.13 0.05
Matches are distributed among these distances:
160 28 0.16
161 12 0.07
162 29 0.17
163 58 0.34
164 30 0.18
165 14 0.08
ACGTcount: A:0.29, C:0.12, G:0.09, T:0.50
Consensus pattern (164 bp):
ATTTTTTTGAGGGGATTTTTCTTGGTTTTTAATTTTTAAAAGTCATCAAACACCATTATTTATCT
CATATTAATTCAGTTTTAAAAAAATAAATTCATTTTCATGAATTTTGGAATTTTTTCCTTGAAAA
TCACCTTTCTCCAAAAAACCGAGTTTTCTACTCC
Found at i:2793127 original size:51 final size:51
Alignment explanation
Indices: 2793086--2793200 Score: 169
Period size: 51 Copynumber: 2.3 Consensus size: 51
2793076 AAGTCCGGGC
*
2793086 TTGGAGTATCCCCGATTGT-GAGAAATTGGTGTTTTGGAAATAAAATCGGAG
1 TTGGAGTATCCCCGATTGTGGA-AAATTGGTATTTTGGAAATAAAATCGGAG
** *
2793137 TTGGAGTATCCCCGATTGTGGAAAATTGGTATTTTAAAAATAAAATCGGGG
1 TTGGAGTATCCCCGATTGTGGAAAATTGGTATTTTGGAAATAAAATCGGAG
*
2793188 TTGAAGTATCCCC
1 TTGGAGTATCCCC
2793201 TCGAAAATAA
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
51 56 0.97
52 2 0.03
ACGTcount: A:0.30, C:0.12, G:0.26, T:0.31
Consensus pattern (51 bp):
TTGGAGTATCCCCGATTGTGGAAAATTGGTATTTTGGAAATAAAATCGGAG
Found at i:2793277 original size:107 final size:108
Alignment explanation
Indices: 2793136--2793363 Score: 284
Period size: 107 Copynumber: 2.1 Consensus size: 108
2793126 TAAAATCGGA
* * ***
2793136 GTTGGAGTATCCCC-GATTGTGGAAAATTGGTATTTTAAAAATAAAATCGGGGTT-GAAGTATCC
1 GTTGGAGTATCCCCTGATTATGAAAAATCAATATTTTAAAAATAAAATCGGGGTTAG-AGTATCC
* * * *
2793199 CCTCGAAAATAAC-GGGATTGGAGTATCCTCGATGACATAATGGG
65 CCTCGAAAATAACAGAG-TTGGAGTATCCCCGATGAAATAACGGG
* * *
2793243 GTTGGAGTA-CCCCTGATTATGAAAAATCAATATTTTAGATATAAAATTGGGGTTAGAGTATCCC
1 GTTGGAGTATCCCCTGATTATGAAAAATCAATATTTTAAAAATAAAATCGGGGTTAGAGTATCCC
* *
2793307 CTTGGAAATAACAGAGTTGGAGTATCCCCGATGAAATAACGGG
66 CTCGAAAATAACAGAGTTGGAGTATCCCCGATGAAATAACGGG
2793350 GTTGGAGTATCCCC
1 GTTGGAGTATCCCC
2793364 AGTTGAGAAA
Statistics
Matches: 103, Mismatches: 14, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
106 4 0.04
107 92 0.89
108 7 0.07
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28
Consensus pattern (108 bp):
GTTGGAGTATCCCCTGATTATGAAAAATCAATATTTTAAAAATAAAATCGGGGTTAGAGTATCCC
CTCGAAAATAACAGAGTTGGAGTATCCCCGATGAAATAACGGG
Found at i:2793330 original size:28 final size:28
Alignment explanation
Indices: 2793298--2793363 Score: 89
Period size: 28 Copynumber: 2.4 Consensus size: 28
2793288 ATTGGGGTTA
*
2793298 GAGTATCCCC-TTGGAAATAACAGAGTTG
1 GAGTATCCCCGAT-GAAATAACAGAGTTG
* *
2793326 GAGTATCCCCGATGAAATAACGGGGTTG
1 GAGTATCCCCGATGAAATAACAGAGTTG
2793354 GAGTATCCCC
1 GAGTATCCCC
2793364 AGTTGAGAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
28 33 0.97
29 1 0.03
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (28 bp):
GAGTATCCCCGATGAAATAACAGAGTTG
Found at i:2795586 original size:20 final size:19
Alignment explanation
Indices: 2795561--2795671 Score: 141
Period size: 20 Copynumber: 5.6 Consensus size: 19
2795551 TGCCTGAATA
*
2795561 TATCGATACATTGTAAAATG
1 TATCGATACAATG-AAAATG
* *
2795581 TATCGATACATTGAGCAATG
1 TATCGATACAATGA-AAATG
2795601 TATCGATACAATGCAAAATG
1 TATCGATACAATG-AAAATG
*
2795621 TATCGATACAATGGACAATG
1 TATCGATACAAT-GAAAATG
2795641 TATCGATACAATGAACAATG
1 TATCGATACAATGAA-AATG
2795661 TATCGATACAA
1 TATCGATACAA
2795672 ATTGTGAAAA
Statistics
Matches: 82, Mismatches: 5, Indels: 8
0.86 0.05 0.08
Matches are distributed among these distances:
19 3 0.04
20 77 0.94
21 2 0.02
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.28
Consensus pattern (19 bp):
TATCGATACAATGAAAATG
Found at i:2795619 original size:40 final size:39
Alignment explanation
Indices: 2795561--2795671 Score: 161
Period size: 40 Copynumber: 2.8 Consensus size: 39
2795551 TGCCTGAATA
* *
2795561 TATCGATACATTGTAAAATGTATCGATAC-ATTGAGCAATG
1 TATCGATACAATG-AAAATGTATCGATACAATGGA-CAATG
2795601 TATCGATACAATGCAAAATGTATCGATACAATGGACAATG
1 TATCGATACAATG-AAAATGTATCGATACAATGGACAATG
2795641 TATCGATACAATGAACAATGTATCGATACAA
1 TATCGATACAATGAA-AATGTATCGATACAA
2795672 ATTGTGAAAA
Statistics
Matches: 66, Mismatches: 3, Indels: 4
0.90 0.04 0.05
Matches are distributed among these distances:
39 2 0.03
40 60 0.91
41 4 0.06
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.28
Consensus pattern (39 bp):
TATCGATACAATGAAAATGTATCGATACAATGGACAATG
Found at i:2796478 original size:19 final size:18
Alignment explanation
Indices: 2796454--2796498 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
2796444 AAAGAGAGAA
2796454 AGAAAAA-AGAAAAAATAGG
1 AGAAAAATAGAAAAAA-A-G
2796473 AGAAAATATAGAAAAAAAG
1 AGAAAA-ATAGAAAAAAAG
2796492 AGAAAAA
1 AGAAAAA
2796499 CTAGGCTAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
18 1 0.04
19 13 0.54
20 2 0.08
21 8 0.33
ACGTcount: A:0.76, C:0.00, G:0.18, T:0.07
Consensus pattern (18 bp):
AGAAAAATAGAAAAAAAG
Found at i:2797673 original size:55 final size:55
Alignment explanation
Indices: 2797581--2797711 Score: 208
Period size: 55 Copynumber: 2.4 Consensus size: 55
2797571 AAAGGAGAGA
* * * *
2797581 GCATCCTCCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTGAAAG
1 GCATCCTACTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAG
* *
2797636 GCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAG
1 GCATCCTACTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAG
2797691 GCATCCTACTCTTTGAGGACT
1 GCATCCTACTCTTTGAGGACT
2797712 AAAAGGCGAA
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
55 69 1.00
ACGTcount: A:0.21, C:0.24, G:0.27, T:0.28
Consensus pattern (55 bp):
GCATCCTACTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAG
Found at i:2797726 original size:149 final size:150
Alignment explanation
Indices: 2797391--2797866 Score: 593
Period size: 149 Copynumber: 3.1 Consensus size: 150
2797381 AATGGAACGT
* * * * *
2797391 GTCCTGCTCTTTGAGGAC--AAAGGAGAAAAGGA-AAAGGCATCCTGCTCTTTGAGGACTAAAAA
1 GTCCTGCTCTTTGAGGACTAAAAGGCG-AAAGGAGAGA-GCATCCTACTCTTTGAGGACTGAGAA
* * * *
2797453 GTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCATCATGCTCTTTGAGGA-TGGGAAGTGC
64 GTGCCACCAACTTGTGTGGGCTTT----AG-AAAGGCATCCTGCTCTTTGAGGACTGGAAAATGC
* *
2797517 CACTAACTTGTGTGGGCTTTAAAAGGT
124 CACCAACTTGTGTGGGCTTTAAAAGGC
* * * *
2797544 GTCATGCTCTTTGAGGACTAAAGGGCGAAAGGAGAGAGCATCCTCCTCTTTGAGGACTGGGAAGT
1 GTCCTGCTCTTTGAGGACTAAAAGGCGAAAGGAGAGAGCATCCTACTCTTTGAGGACTGAGAAGT
*
2797609 GCCACCAACTTGTGTGGGCTTT-GAAAGGCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAAC
66 GCCACCAACTTGTGTGGGCTTTAGAAAGGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAAC
2797673 TTGTGTGGGCTTTAAAAGGC
131 TTGTGTGGGCTTTAAAAGGC
* * ** *
2797693 ATCCTACTCTTTGAGGACTAAAAGGCGAAAGGAGAGAGTGTCCTACTCTTTGAGGATTGAGAAGT
1 GTCCTGCTCTTTGAGGACTAAAAGGCGAAAGGAGAGAGCATCCTACTCTTTGAGGACTGAGAAGT
*
2797758 GCCACCAACTTGTGTGGGCTTTAAAAGGAGAAAGCATCCTGCTCTTTGAGGACTGGAAAATGCCA
66 GCCACCAACTTGTGTGGGCTTT---A-GA-AAGGCATCCTGCTCTTTGAGGACTGGAAAATGCCA
* *
2797823 CCAACTTGTATGGGCTTTGAAAGGC
126 CCAACTTGTGTGGGCTTTAAAAGGC
2797848 GTCCTGCTCTTTGAGGACT
1 GTCCTGCTCTTTGAGGACT
2797867 GGAAAATGCC
Statistics
Matches: 283, Mismatches: 30, Indels: 18
0.85 0.09 0.05
Matches are distributed among these distances:
148 21 0.07
149 112 0.40
153 17 0.06
154 53 0.19
155 80 0.28
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.25
Consensus pattern (150 bp):
GTCCTGCTCTTTGAGGACTAAAAGGCGAAAGGAGAGAGCATCCTACTCTTTGAGGACTGAGAAGT
GCCACCAACTTGTGTGGGCTTTAGAAAGGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAAC
TTGTGTGGGCTTTAAAAGGC
Found at i:2797747 original size:94 final size:94
Alignment explanation
Indices: 2797636--2798015 Score: 375
Period size: 94 Copynumber: 3.8 Consensus size: 94
2797626 GCTTTGAAAG
*
2797636 GCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTACT
1 GCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCT
2797701 CTTTGAGGACTAAAAGGCGAAAGGAGAGA
66 CTTTGAGGACTAAAAGGCGAAAGGAGAGA
* * * *
2797730 GTGTCCTACTCTTTGAGGA-TTGAGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAAGCA
1 GCGTCCTGCTCTTTGAGGACTGGA-AAATGCCACCAACTTGTGTGGGCTTT-AAA--AG---GCA
* * * *
2797794 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTATGGGCTTTGAAA
59 TCCTGCTCTTTGAGGACT--AAAA-G--GCGAA-----A--GG---AGAGA
* *
2797845 GGCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCTTGC
1 -GCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGC
*
2797910 TCTTTGAGGACTAAAGGGCGAAAGGAGAGA
65 TCTTTGAGGACTAAAAGGCGAAAGGAGAGA
* * * * * * *
2797940 GCGCCCTTCTTTTTGAGGACTGGGAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCTTGCT
1 GCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCT
2798005 CTTTGAGGACT
66 CTTTGAGGACT
2798016 GGAAAATGCC
Statistics
Matches: 237, Mismatches: 25, Indels: 48
0.76 0.08 0.15
Matches are distributed among these distances:
93 3 0.01
94 113 0.48
95 6 0.03
97 2 0.01
98 2 0.01
100 21 0.09
102 4 0.02
103 1 0.00
105 6 0.03
107 1 0.00
108 3 0.01
110 20 0.08
112 2 0.01
113 2 0.01
115 6 0.03
116 42 0.18
117 3 0.01
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (94 bp):
GCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCT
CTTTGAGGACTAAAAGGCGAAAGGAGAGA
Found at i:2797826 original size:210 final size:209
Alignment explanation
Indices: 2797571--2798070 Score: 776
Period size: 210 Copynumber: 2.4 Consensus size: 209
2797561 CTAAAGGGCG
* * * *
2797571 AAAGGAGAGAGCATCCTCCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTGAAAG
1 AAAGGAGAAAGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAG
2797636 GCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTACT
66 GCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTACT
* * * *
2797701 CTTTGAGGACTAAAAGGCGAAAGGAGAGAGTGTCCTACTCTTTGAGGATTGAGAAGTGCCACCAA
131 CTTTGAGGACTAAAAGGCGAAAGGAGAGAGCGCCCTACTCTTTGAGGACTGAGAAATGCCACCAA
2797766 CTTGTGTGGGCTTT
196 CTTGTGTGGGCTTT
*
2797780 AAAAGGAGAAAGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTATGGGCTTTGAAA
1 -AAAGGAGAAAGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAA
* * *
2797845 GGCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCTTGC
65 GGCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTAC
* * * *
2797910 TCTTTGAGGACTAAAGGGCGAAAGGAGAGAGCGCCCTTCTTTTTGAGGACTGGGAAATGCCACCA
130 TCTTTGAGGACTAAAAGGCGAAAGGAGAGAGCGCCCTACTCTTTGAGGACTGAGAAATGCCACCA
2797975 ACTTGTGTGGGCTTT
195 ACTTGTGTGGGCTTT
* * * *
2797990 ----GA-AAGGCGTCTTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAG
1 AAAGGAGAAAGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAG
2798050 GCGTCCTGCTCTTTGAGGACT
66 GCGTCCTGCTCTTTGAGGACT
2798071 ATAGGGTGAA
Statistics
Matches: 269, Mismatches: 21, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
204 74 0.28
205 2 0.01
210 193 0.72
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (209 bp):
AAAGGAGAAAGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAG
GCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTACT
CTTTGAGGACTAAAAGGCGAAAGGAGAGAGCGCCCTACTCTTTGAGGACTGAGAAATGCCACCAA
CTTGTGTGGGCTTT
Found at i:2797858 original size:55 final size:55
Alignment explanation
Indices: 2797732--2797921 Score: 238
Period size: 55 Copynumber: 3.3 Consensus size: 55
2797722 AGGAGAGAGT
* * * *
2797732 GTCCTACTCTTTGAGGA-TTGAGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAAGC
1 GTCCTGCTCTTTGAGGACTGGA-AAATGCCACCAACTTGTATGGGCTTT-AAA--AG---GC
* *
2797793 ATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTATGGGCTTTGAAAGGC
1 GTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTATGGGCTTTAAAAGGC
*
2797848 GTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGC
1 GTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTATGGGCTTTAAAAGGC
*
2797903 GTCTTGCTCTTTGAGGACT
1 GTCCTGCTCTTTGAGGACT
2797922 AAAGGGCGAA
Statistics
Matches: 118, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
55 72 0.61
58 2 0.02
60 2 0.02
61 39 0.33
62 3 0.03
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (55 bp):
GTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTATGGGCTTTAAAAGGC
Found at i:2797986 original size:149 final size:149
Alignment explanation
Indices: 2797795--2798172 Score: 560
Period size: 149 Copynumber: 2.5 Consensus size: 149
2797785 GAGAAAGCAT
* *
2797795 CCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTATGGGCTTTGAAAGGCGTCCTGCTCTTT
1 CCTGCTCTTTGAGGACTGGGAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTT
*
2797860 GAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCTTGCTCTTTGAGGACTAAA
66 GAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGACTAAA
*
2797925 GGGCGAAAGGAGAGAGCGC
131 GGGCGAAAAGAGAGAGCGC
* * *
2797944 CCTTCTTTTTGAGGACTGGGAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCTTGCTCTTT
1 CCTGCTCTTTGAGGACTGGGAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTT
*
2798009 GAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGACTATA
66 GAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGACTAAA
* *
2798074 GGGTGAAAAGAGAGAGCGT
131 GGGCGAAAAGAGAGAGCGC
* * * *
2798093 CCTGCTCTTTGAAGACT-AGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAGAAGGCATCCT
1 CCTGCTCTTTGAGGACTGGGAA-ATGCCACCAACTTGTGTGGGCTTT----G-A-AAGGCGTCCT
2798157 GCTCTTTGAGGACTGG
59 GCTCTTTGAGGACTGG
2798173 GAAAGTGAAA
Statistics
Matches: 205, Mismatches: 17, Indels: 8
0.89 0.07 0.03
Matches are distributed among these distances:
148 3 0.01
149 176 0.86
153 1 0.00
154 1 0.00
155 24 0.12
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.26
Consensus pattern (149 bp):
CCTGCTCTTTGAGGACTGGGAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTT
GAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGACTAAA
GGGCGAAAAGAGAGAGCGC
Found at i:2798033 original size:55 final size:55
Alignment explanation
Indices: 2797951--2798070 Score: 213
Period size: 55 Copynumber: 2.2 Consensus size: 55
2797941 CGCCCTTCTT
* * *
2797951 TTTGAGGACTGGGAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCTTGCTC
1 TTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTC
2798006 TTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTC
1 TTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTC
2798061 TTTGAGGACT
1 TTTGAGGACT
2798071 ATAGGGTGAA
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 62 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (55 bp):
TTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTC
Found at i:2798089 original size:359 final size:361
Alignment explanation
Indices: 2797416--2798179 Score: 1162
Period size: 359 Copynumber: 2.1 Consensus size: 361
2797406 GACAAAGGAG
* *
2797416 AAAAGGA-AAAGGCATCCTGCTCTTTGAGGACT-AAAAAGTGCCACCAACTCGTGTGGGCTTTGA
1 AAAAGGAGAAA-GCATCCTGCTCTTTGAGGACTGGAAAAGTGCCACCAACTCGTATGGGCTTT--
* * * *
2797479 AAAGAAAAGGCATCATGCTCTTTGAGGATGGGAAGTGCCACTAACTTGTGTGGGCTTTAAAAGGT
63 --AGAAAAGGCATCATGCTCTTTGAGGATGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGC
* *
2797544 GTCATGCTCTTTGAGGACTAAAGGGCGAAAGGAGAGAGCATCCTCCTCTTTGAGGACTGGGAAGT
126 GTCATGCTCTTTGAGGACTAAAGGGCGAAAGGAGAGAGCACCCTCCTCTTTGAGGACTGGGAAAT
2797609 GCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACT
191 GCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACT
* *
2797674 TGTGTGGGCTTTAAAAGGCATCCTACTCTTTGAGGACTAAAAGGCGAAAGGAGAGAGTGTCCTAC
256 TGTGTGGGCTTTAAAAGGCATCCTACTCTTTGAGGACTAAAAGGCGAAAAGAGAGAGCGTCCTAC
* *
2797739 TCTTTGAGGATTGAGAA-GTGCCACCAACTTGTGTGGGCTTT
321 TCTTTGAAGACT-AGAAGGTGCCACCAACTTGTGTGGGCTTT
*
2797780 AAAAGGAGAAAGCATCCTGCTCTTTGAGGACTGGAAAA-TGCCACCAACTTGTATGGGCTTT-G-
1 AAAAGGAGAAAGCATCCTGCTCTTTGAGGACTGGAAAAGTGCCACCAACTCGTATGGGCTTTAGA
* * *
2797842 AAAGGCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCT
66 AAAGGCATCATGCTCTTTGAGGA-TGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCA
* * *
2797907 TGCTCTTTGAGGACTAAAGGGCGAAAGGAGAGAGCGCCCTTCTTTTTGAGGACTGGGAAATGCCA
130 TGCTCTTTGAGGACTAAAGGGCGAAAGGAGAGAGCACCCTCCTCTTTGAGGACTGGGAAATGCCA
*
2797972 CCAACTTGTGTGGGCTTTGAAAGGCGTCTTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTG
195 CCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTG
* * * * * *
2798037 TGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGACTATAGGGTGAAAAGAGAGAGCGTCCTGCTCTT
260 TGGGCTTTAAAAGGCATCCTACTCTTTGAGGACTAAAAGGCGAAAAGAGAGAGCGTCCTACTCTT
2798102 TGAAGACTAGAAGGTGCCACCAACTTGTGTGGGCTTT
325 TGAAGACTAGAAGGTGCCACCAACTTGTGTGGGCTTT
* * *
2798139 AAAAGAAGAAGGCATCCTGCTCTTTGAGGACTGGGAAAGTG
1 AAAAGGAGAAAGCATCCTGCTCTTTGAGGACTGGAAAAGTG
2798180 AAAGGAGAAA
Statistics
Matches: 366, Mismatches: 29, Indels: 14
0.89 0.07 0.03
Matches are distributed among these distances:
358 25 0.07
359 283 0.77
360 2 0.01
364 49 0.13
365 7 0.02
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (361 bp):
AAAAGGAGAAAGCATCCTGCTCTTTGAGGACTGGAAAAGTGCCACCAACTCGTATGGGCTTTAGA
AAAGGCATCATGCTCTTTGAGGATGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCAT
GCTCTTTGAGGACTAAAGGGCGAAAGGAGAGAGCACCCTCCTCTTTGAGGACTGGGAAATGCCAC
CAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGT
GGGCTTTAAAAGGCATCCTACTCTTTGAGGACTAAAAGGCGAAAAGAGAGAGCGTCCTACTCTTT
GAAGACTAGAAGGTGCCACCAACTTGTGTGGGCTTT
Found at i:2799165 original size:9 final size:9
Alignment explanation
Indices: 2799152--2799210 Score: 81
Period size: 9 Copynumber: 6.9 Consensus size: 9
2799142 TTTTCTCTCT
2799152 TTTTTCTTTG
1 TTTTT-TTTG
2799162 TTTTTTTTG
1 TTTTTTTTG
2799171 TTTTTTTTG
1 TTTTTTTTG
2799180 -TTTTTTTG
1 TTTTTTTTG
2799188 ---TTTTTG
1 TTTTTTTTG
2799194 TTTTTTTTG
1 TTTTTTTTG
2799203 TTTTTTTT
1 TTTTTTTT
2799211 TAAAAAAGGT
Statistics
Matches: 46, Mismatches: 0, Indels: 7
0.87 0.00 0.13
Matches are distributed among these distances:
6 6 0.13
8 8 0.17
9 27 0.59
10 5 0.11
ACGTcount: A:0.00, C:0.02, G:0.10, T:0.88
Consensus pattern (9 bp):
TTTTTTTTG
Found at i:2799166 original size:1 final size:1
Alignment explanation
Indices: 2799151--2799211 Score: 59
Period size: 1 Copynumber: 61.0 Consensus size: 1
2799141 CTTTTCTCTC
* * * * * * *
2799151 TTTTTTCTTTGTTTTTTTTGTTTTTTTTGTTTTTTTGTTTTTGTTTTTTTTGTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
2799212 AAAAAAGGTG
Statistics
Matches: 46, Mismatches: 14, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 46 1.00
ACGTcount: A:0.00, C:0.02, G:0.10, T:0.89
Consensus pattern (1 bp):
T
Found at i:2799177 original size:23 final size:23
Alignment explanation
Indices: 2799165--2799209 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
2799155 TTCTTTGTTT
2799165 TTTTTGTTTTTTTTGTTTTTTTG
1 TTTTTGTTTTTTTTGTTTTTTTG
2799188 TTTTTGTTTTTTTTGTTTTTTT
1 TTTTTGTTTTTTTTGTTTTTTT
2799210 TTAAAAAAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.00, C:0.00, G:0.11, T:0.89
Consensus pattern (23 bp):
TTTTTGTTTTTTTTGTTTTTTTG
Found at i:2803277 original size:21 final size:21
Alignment explanation
Indices: 2803247--2803306 Score: 113
Period size: 21 Copynumber: 2.9 Consensus size: 21
2803237 CACATTTTTG
2803247 TCTA-AATGTATCGATACATT
1 TCTAGAATGTATCGATACATT
2803267 TCTAGAATGTATCGATACATT
1 TCTAGAATGTATCGATACATT
2803288 TCTAGAATGTATCGATACA
1 TCTAGAATGTATCGATACA
2803307 AGGTCCCAAC
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
20 4 0.10
21 35 0.90
ACGTcount: A:0.35, C:0.15, G:0.13, T:0.37
Consensus pattern (21 bp):
TCTAGAATGTATCGATACATT
Found at i:2810380 original size:12 final size:12
Alignment explanation
Indices: 2810365--2810432 Score: 61
Period size: 13 Copynumber: 5.5 Consensus size: 12
2810355 CAAACACAAA
2810365 AAAAAACAACAC
1 AAAAAACAACAC
*
2810377 AAAAAAACAAAAAC
1 -AAAAAAC-AACAC
2810391 AAAAAAACAACA-
1 -AAAAAACAACAC
2810403 AGAAAAAC-A-AC
1 A-AAAAACAACAC
2810414 AAAAAACACACAC
1 AAAAAACA-ACAC
2810427 AAAAAA
1 AAAAAA
2810433 AAAAAGAGTG
Statistics
Matches: 47, Mismatches: 2, Indels: 12
0.77 0.03 0.20
Matches are distributed among these distances:
10 7 0.15
11 3 0.06
12 7 0.15
13 18 0.38
14 12 0.26
ACGTcount: A:0.79, C:0.19, G:0.01, T:0.00
Consensus pattern (12 bp):
AAAAAACAACAC
Found at i:2810392 original size:29 final size:29
Alignment explanation
Indices: 2810354--2810418 Score: 87
Period size: 29 Copynumber: 2.2 Consensus size: 29
2810344 CCTCAAAAGT
*
2810354 ACAAACACAAAAAAA-AACAACACAAAAAA
1 ACAAAAACAAAAAAACAACAACA-AAAAAA
* *
2810383 ACAAAAACAAAAAAACAACAAGAAAAACA
1 ACAAAAACAAAAAAACAACAACAAAAAAA
2810412 ACAAAAA
1 ACAAAAA
2810419 ACACACACAA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
29 26 0.81
30 6 0.19
ACGTcount: A:0.80, C:0.18, G:0.02, T:0.00
Consensus pattern (29 bp):
ACAAAAACAAAAAAACAACAACAAAAAAA
Found at i:2810399 original size:39 final size:40
Alignment explanation
Indices: 2810363--2810437 Score: 102
Period size: 39 Copynumber: 1.9 Consensus size: 40
2810353 TACAAACACA
2810363 AAAAAAAACAACACAAAAA-A-ACA-AAAACAAAAAAACAAC
1 AAAAAAAACAACA-AAAAACACACACAAAA-AAAAAAACAAC
*
2810402 AAGAAAAACAACAAAAAACACACACAAAAAAAAAAA
1 AAAAAAAACAACAAAAAACACACACAAAAAAAAAAA
2810438 GAGTGCAAAG
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
38 5 0.16
39 13 0.41
40 10 0.31
41 4 0.12
ACGTcount: A:0.81, C:0.17, G:0.01, T:0.00
Consensus pattern (40 bp):
AAAAAAAACAACAAAAAACACACACAAAAAAAAAAACAAC
Found at i:2811762 original size:31 final size:30
Alignment explanation
Indices: 2811716--2811803 Score: 106
Period size: 31 Copynumber: 2.9 Consensus size: 30
2811706 CTTTAAATAC
*
2811716 CTTCTTAAAGTCCACGACTCAGTGGCAATCT
1 CTTCTCAAAGTCCACGACTCAGTGGCAAT-T
*
2811747 CTTCTCAAAGCCCACGACTCAGTGGC-ATT
1 CTTCTCAAAGTCCACGACTCAGTGGCAATT
* * *
2811776 TTGTCCCAAAGTCCACGACTCCGTGGCA
1 CT-TCTCAAAGTCCACGACTCAGTGGCA
2811804 TCCTTTTAAG
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
29 2 0.04
30 23 0.47
31 24 0.49
ACGTcount: A:0.24, C:0.33, G:0.18, T:0.25
Consensus pattern (30 bp):
CTTCTCAAAGTCCACGACTCAGTGGCAATT
Found at i:2811792 original size:30 final size:30
Alignment explanation
Indices: 2811722--2811805 Score: 107
Period size: 30 Copynumber: 2.8 Consensus size: 30
2811712 ATACCTTCTT
*
2811722 AAAGTCCACGACTCAGTGGCAATCTCTTCTC
1 AAAGTCCACGACTCAGTGGC-ATCTCTTCCC
* *
2811753 AAAGCCCACGACTCAGTGGCAT-TTTGTCCC
1 AAAGTCCACGACTCAGTGGCATCTCT-TCCC
*
2811783 AAAGTCCACGACTCCGTGGCATC
1 AAAGTCCACGACTCAGTGGCATC
2811806 CTTTTAAGTC
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
29 2 0.04
30 25 0.54
31 19 0.41
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.23
Consensus pattern (30 bp):
AAAGTCCACGACTCAGTGGCATCTCTTCCC
Found at i:2811846 original size:33 final size:33
Alignment explanation
Indices: 2811804--2812211 Score: 375
Period size: 33 Copynumber: 12.8 Consensus size: 33
2811794 CTCCGTGGCA
** * *
2811804 TCCTTTTAAGTCCACAACTTTGTGGCACCTTGT
1 TCCTTTTAAGTCCACAACTCCGTGGCATCTTTT
***
2811837 TCCTTTTAAGTCCACAACTTTATGGCATCTTTT
1 TCCTTTTAAGTCCACAACTCCGTGGCATCTTTT
2811870 TCCTTTTAAGTCCACAACTCCGTGGCA-C----
1 TCCTTTTAAGTCCACAACTCCGTGGCATCTTTT
* * *
2811898 T-CTTTTAAAGCCCATAACTCTGTGGCA-C----
1 TCCTTTT-AAGTCCACAACTCCGTGGCATCTTTT
** **
2811926 -CCTTTTAAAGTCCATGACTTTGTGGCA------
1 TCCTTTT-AAGTCCACAACTCCGTGGCATCTTTT
* * * *
2811953 TCCTTTTAAGTCCACAACTCTGTTGCACCTTGT
1 TCCTTTTAAGTCCACAACTCCGTGGCATCTTTT
*
2811986 TCCTTTTAAATCCACAACTCCGTGGCATCTTTT
1 TCCTTTTAAGTCCACAACTCCGTGGCATCTTTT
** *
2812019 TCCTTTTAAGTCCATGACTTCGTGGCATCTTTT
1 TCCTTTTAAGTCCACAACTCCGTGGCATCTTTT
** *
2812052 TCCTTTTAAGTCCATGACTTCGTGGCATCTTTT
1 TCCTTTTAAGTCCACAACTCCGTGGCATCTTTT
2812085 TCCTTTTAAGTCCACAACTCCGTGGCATCTTTT
1 TCCTTTTAAGTCCACAACTCCGTGGCATCTTTT
* * *
2812118 TCTTTTTAAAGTCCACAACTCCGTGGCACCTTGT
1 TCCTTTT-AAGTCCACAACTCCGTGGCATCTTTT
2812152 TCCTTTTAAGTCCACAACTCCGTGGCATCTTTT
1 TCCTTTTAAGTCCACAACTCCGTGGCATCTTTT
* * * *
2812185 TTCTTTTAAGCCCACAAGTCAGTGGCA
1 TCCTTTTAAGTCCACAACTCCGTGGCA
2812212 ACCTTCAAAA
Statistics
Matches: 327, Mismatches: 38, Indels: 20
0.85 0.10 0.05
Matches are distributed among these distances:
27 21 0.06
28 48 0.15
32 1 0.00
33 227 0.69
34 30 0.09
ACGTcount: A:0.20, C:0.28, G:0.14, T:0.38
Consensus pattern (33 bp):
TCCTTTTAAGTCCACAACTCCGTGGCATCTTTT
Found at i:2811925 original size:28 final size:27
Alignment explanation
Indices: 2811784--2811980 Score: 119
Period size: 33 Copynumber: 6.8 Consensus size: 27
2811774 TTTTGTCCCA
* *
2811784 AAGTCCACGACTCCGTGGCA-TCCTTTT
1 AAGTCCACAACTCTGTGGCACT-CTTTT
*
2811811 AAGTCCACAACTTTGTGGCACCTTGTTCCTTTT
1 AAGTCCACAACTCTGTGGCA-C----T-CTTTT
* *
2811844 AAGTCCACAACTTTATGGCATCTTTTTCCTTTT
1 AAGTCCACAACTCTGTGGCA-C----T-CTTTT
*
2811877 AAGTCCACAACTCCGTGGCACTCTTTT
1 AAGTCCACAACTCTGTGGCACTCTTTT
* * *
2811904 AAAGCCCATAACTCTGTGGCACCCTTTT
1 -AAGTCCACAACTCTGTGGCACTCTTTT
** *
2811932 AAAGTCCATGACTTTGTGGCA-TCCTTTT
1 -AAGTCCACAACTCTGTGGCACT-CTTTT
*
2811960 AAGTCCACAACTCTGTTGCAC
1 AAGTCCACAACTCTGTGGCAC
2811981 CTTGTTCCTT
Statistics
Matches: 140, Mismatches: 21, Indels: 17
0.79 0.12 0.10
Matches are distributed among these distances:
27 38 0.27
28 47 0.34
32 1 0.01
33 54 0.39
ACGTcount: A:0.22, C:0.29, G:0.15, T:0.35
Consensus pattern (27 bp):
AAGTCCACAACTCTGTGGCACTCTTTT
Found at i:2811959 original size:149 final size:148
Alignment explanation
Indices: 2811783--2812211 Score: 448
Period size: 149 Copynumber: 2.8 Consensus size: 148
2811773 ATTTTGTCCC
* *
2811783 AAAGTCCACGACTCCGTGGCATCCTTTTAAGTCCACAACTTTGTGGCACCTTGTTCCTTTTAAGT
1 AAAGTCCACGACTCCGTGGCATCCTTTTAAGTCCACAACTCTGTGGCACCTTGTTCCTTTTAAAT
**
2811848 CCACAACTTTATGGCATCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACTCTTTTAAAGCCCAT
66 CCACAACTCCATGGCATCTTTTTCCTTTTAAGTCCACAACTCCGTGGCA-TCTTTTAAAGCCCAT
2811913 AACTCTGTGGCACCCTTTT
130 AACTCTGTGGCACCCTTTT
* ** *
2811932 AAAGTCCATGACTTTGTGGCATCCTTTTAAGTCCACAACTCTGTTGCACCTTGTTCCTTTTAAAT
1 AAAGTCCACGACTCCGTGGCATCCTTTTAAGTCCACAACTCTGTGGCACCTTGTTCCTTTTAAAT
* ** * *
2811997 CCACAACTCCGTGGCATCTTTTTCCTTTTAAGTCCATGACTTCGTGGCATCTTTTTCCTTTTAAG
66 CCACAACTCCATGGCATCTTTTTCCTTTTAAGTCCACAACTCCGTGGCATC----T--TTTAAAG
* *
2812062 TCCATGACT-TCGTGGCATCTTTTTCCTTTT
125 CCCATAACTCT-GTGGCA-C-----CCTTTT
* *
2812092 -AAGTCCACAACTCCGTGGCATCTTTTTCTTTTTAAAGTCCACAACTCCGTGGCACCTTGTTCCT
1 AAAGTCCACGACTCCGTGGCATC-----C-TTTT-AAGTCCACAACTCTGTGGCACCTTGTTCCT
* * * * * *
2812156 TTTAAGTCCACAACTCCGTGGCATCTTTTTTCTTTTAAGCCCACAAGTCAGTGGCA
59 TTTAAATCCACAACTCCATGGCATCTTTTTCCTTTTAAGTCCACAACTCCGTGGCA
2812212 ACCTTCAAAA
Statistics
Matches: 231, Mismatches: 29, Indels: 23
0.82 0.10 0.08
Matches are distributed among these distances:
148 2 0.01
149 102 0.44
152 1 0.00
153 1 0.00
154 19 0.08
155 1 0.00
159 18 0.08
160 6 0.03
164 1 0.00
165 4 0.02
166 76 0.33
ACGTcount: A:0.20, C:0.28, G:0.14, T:0.37
Consensus pattern (148 bp):
AAAGTCCACGACTCCGTGGCATCCTTTTAAGTCCACAACTCTGTGGCACCTTGTTCCTTTTAAAT
CCACAACTCCATGGCATCTTTTTCCTTTTAAGTCCACAACTCCGTGGCATCTTTTAAAGCCCATA
ACTCTGTGGCACCCTTTT
Found at i:2812443 original size:49 final size:49
Alignment explanation
Indices: 2812366--2812747 Score: 316
Period size: 49 Copynumber: 7.8 Consensus size: 49
2812356 CACATTGGCA
* * * *
2812366 TAAGCCCAATATCGCTGACCTTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* *
2812415 TAAGTCCAATGTCGTTAGCCTTGAATCAGCACATTGG------CA-C--
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * * * * * **
2812455 -AAGCCCAGTATTGCTGGCCTTGAATAAACAAATTGGTGCCTTCGTCATCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC-T--TCATCTT
*
2812506 TAAGTCCAATGTTGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * * *
2812555 TAAGTCCACTATCGCTGGCCTTCAATCAGCATATTGGCGCCTTCGTCATCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC-T--TCATCTT
*
2812607 TAAGTCTAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * * *
2812656 TAAGTCCAATATCGTTGGCCTTGAATCAACATATTGGCGCCTTCGTCATCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC-T--TCATCTT
** * **
2812708 TAAAACCCATTGTCATTGGCCTTGAATCAGCACATTGGCA
1 T-AAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
2812748 TTCTTCTCAT
Statistics
Matches: 264, Mismatches: 49, Indels: 36
0.76 0.14 0.10
Matches are distributed among these distances:
39 27 0.10
42 1 0.00
43 2 0.01
48 2 0.01
49 116 0.44
50 2 0.01
51 2 0.01
52 82 0.31
53 30 0.11
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.31
Consensus pattern (49 bp):
TAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
Found at i:2812549 original size:52 final size:51
Alignment explanation
Indices: 2812467--2812822 Score: 317
Period size: 52 Copynumber: 6.9 Consensus size: 51
2812457 GCCCAGTATT
* * * ** *
2812467 GCTGGCCTTGAATAAACAAATTGGTGCCTTCGTCATCTTTAAGTCCAATGTT
1 GCTGGCCTTGAATCAGCACATTGGCACCTTC-TCATCTTTAAGTCCAATGTC
* *
2812519 GCTGGCCTTGAATCAGCACATTGGCACC-T-TCATCTTTAAGTCCACTATC
1 GCTGGCCTTGAATCAGCACATTGGCACCTTCTCATCTTTAAGTCCAATGTC
* * * *
2812568 GCTGGCCTTCAATCAGCATATTGGCGCCTTCGTCATCTTTAAGTCTAATGTC
1 GCTGGCCTTGAATCAGCACATTGGCACCTTC-TCATCTTTAAGTCCAATGTC
*
2812620 GCTGGCCTTGAATCAGCACATTGGCACC-T-TCATCTTTAAGTCCAATATC
1 GCTGGCCTTGAATCAGCACATTGGCACCTTCTCATCTTTAAGTCCAATGTC
* * * * ** *
2812669 GTTGGCCTTGAATCAACATATTGGCGCCTTCGTCATCTTTAAAACCCATTGTC
1 GCTGGCCTTGAATCAGCACATTGGCACCTTC-TCATCTTT-AAGTCCAATGTC
** * * * *
2812722 ATTGGCCTTGAATCAGCACATTGGCATTCTTCTCATCTTCAAGACTAATGTC
1 GCTGGCCTTGAATCAGCACATTGGCA-CCTTCTCATCTTTAAGTCCAATGTC
* * * * * * *
2812774 ACTGACCGTGAATCAGGACATTGACATTCTT-TACATCTTTAAGCCCAAT
1 GCTGGCCTTGAATCAGCACATTGGCA-CCTTCT-CATCTTTAAGTCCAAT
2812823 ATCACTAGTC
Statistics
Matches: 250, Mismatches: 45, Indels: 18
0.80 0.14 0.06
Matches are distributed among these distances:
49 84 0.34
50 2 0.01
51 3 0.01
52 120 0.48
53 37 0.15
54 4 0.02
ACGTcount: A:0.24, C:0.26, G:0.17, T:0.33
Consensus pattern (51 bp):
GCTGGCCTTGAATCAGCACATTGGCACCTTCTCATCTTTAAGTCCAATGTC
Found at i:2812642 original size:101 final size:101
Alignment explanation
Indices: 2812467--2812747 Score: 427
Period size: 101 Copynumber: 2.8 Consensus size: 101
2812457 GCCCAGTATT
* * * *
2812467 GCTGGCCTTGAATAAACAAATTGGTGCCTTCGTCATCTTTAAGTCCAATGTTGCTGGCCTTGAAT
1 GCTGGCCTTGAATCAACATATTGGCGCCTTCGTCATCTTTAAGTCCAATGTCGCTGGCCTTGAAT
*
2812532 CAGCACATTGGCACCTTCATCTTTAAGTCCACTATC
66 CAGCACATTGGCACCTTCATCTTTAAGTCCAATATC
* * *
2812568 GCTGGCCTTCAATCAGCATATTGGCGCCTTCGTCATCTTTAAGTCTAATGTCGCTGGCCTTGAAT
1 GCTGGCCTTGAATCAACATATTGGCGCCTTCGTCATCTTTAAGTCCAATGTCGCTGGCCTTGAAT
2812633 CAGCACATTGGCACCTTCATCTTTAAGTCCAATATC
66 CAGCACATTGGCACCTTCATCTTTAAGTCCAATATC
* ** * **
2812669 GTTGGCCTTGAATCAACATATTGGCGCCTTCGTCATCTTTAAAACCCATTGTCATTGGCCTTGAA
1 GCTGGCCTTGAATCAACATATTGGCGCCTTCGTCATCTTT-AAGTCCAATGTCGCTGGCCTTGAA
2812734 TCAGCACATTGGCA
65 TCAGCACATTGGCA
2812748 TTCTTCTCAT
Statistics
Matches: 162, Mismatches: 17, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
101 130 0.80
102 32 0.20
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.32
Consensus pattern (101 bp):
GCTGGCCTTGAATCAACATATTGGCGCCTTCGTCATCTTTAAGTCCAATGTCGCTGGCCTTGAAT
CAGCACATTGGCACCTTCATCTTTAAGTCCAATATC
Found at i:2816292 original size:419 final size:419
Alignment explanation
Indices: 2815514--2816305 Score: 1408
Period size: 419 Copynumber: 1.9 Consensus size: 419
2815504 CTTGTTTTGG
*
2815514 TCTTGGTCAAACTTGGTTTATCCTTCTCGGGTTTCACCTCGAGGTACTCGGATATCTCCGCGCAA
1 TCTTGGTCAAACTTGGTTTATCCTTCTCGGGTTTCACCTCAAGGTACTCGGATATCTCCGCGCAA
*
2815579 TCCCGATCAGTCTCAAAACCTTTTTTGAACCTCATTTAGAGCATGTCAAGGCGTAAATGCTTTTA
66 TCCCGATCAGTCTCAAAACCTTTTTTGAACCTCATTTAGAGCATGTCAAGGCATAAATGCTTTTA
2815644 CATCTTTAGCGTCTTCATTCACATCATTTCTCACATCAAAAATATAAAAAATTTATTCATCGGGG
131 CATCTTTAGCGTCTTCATTCACATCATTTCTCACATCAAAAATATAAAAAATTTATTCATCGGGG
2815709 ACACTCCAACCCCATTCCTCCGAGGAGACACTCCAACCTCATTTTCAACCAAAAATTAAATTCCA
196 ACACTCCAACCCCATTCCTCCGAGGAGACACTCCAACCTCATTTTCAACCAAAAATTAAATTCCA
**
2815774 TTTTCTCTCCCACATTTCGAGTCAAACTCGTTTTCGAACTTCAGTGAATCAAAGAATCCAGATAA
261 TTTTCTCTCCCACATTTCGAGTCAAACTCGTTTTCGAACTTCAACGAATCAAAGAATCCAGATAA
* *
2815839 ATCTCTAAATTGTCTATCCGATTATTTCAAGATAATTGGTGGCAATTAGGGTCACCTCGAGGTAC
326 ATCTCTAAATTATCTATCCGATTATTTCAAGATAATCGGTGGCAATTAGGGTCACCTCGAGGTAC
2815904 TCGGATATCCTTCTCGGATATCTCGGATA
391 TCGGATATCCTTCTCGGATATCTCGGATA
* *
2815933 TCTTGGTTAAACTTGGTTTATCCTTCTCGGGTTTCACCTCAAGGTACTCGGATATCTCCGTGCAA
1 TCTTGGTCAAACTTGGTTTATCCTTCTCGGGTTTCACCTCAAGGTACTCGGATATCTCCGCGCAA
* **
2815998 TCCCGATCAGTCTCCAAACCTTTTTTGAACCTCATTTAGAGCATGTCAAGTTATAAATGCTTTTA
66 TCCCGATCAGTCTCAAAACCTTTTTTGAACCTCATTTAGAGCATGTCAAGGCATAAATGCTTTTA
2816063 CATCTTTAGCGTCTTCATTCACATCATTTCTCACATCAAAAATATAAAAAATTTATTCATCGGGG
131 CATCTTTAGCGTCTTCATTCACATCATTTCTCACATCAAAAATATAAAAAATTTATTCATCGGGG
* * * *
2816128 ACACTGCAACCCCGTTCCTCCGAGGGGACACTCCAACCTTATTTTCAACCAAAAATTAAATTCCA
196 ACACTCCAACCCCATTCCTCCGAGGAGACACTCCAACCTCATTTTCAACCAAAAATTAAATTCCA
*
2816193 TTTTCTCTCCCACATTTCGAGTCAAACTCGTTTTC-AGACTTCAACGAATCAAAGAATTC-GAAT
261 TTTTCTCTCCCACATTTCGAGTCAAACTCGTTTTCGA-ACTTCAACGAATCAAAGAATCCAG-AT
2816256 AAATCTCTAAATTATCTATCCGATTATTTCAAGATAATCGGTGGCAATTA
324 AAATCTCTAAATTATCTATCCGATTATTTCAAGATAATCGGTGGCAATTA
2816306 CGAGATACAT
Statistics
Matches: 355, Mismatches: 16, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
418 2 0.01
419 353 0.99
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.33
Consensus pattern (419 bp):
TCTTGGTCAAACTTGGTTTATCCTTCTCGGGTTTCACCTCAAGGTACTCGGATATCTCCGCGCAA
TCCCGATCAGTCTCAAAACCTTTTTTGAACCTCATTTAGAGCATGTCAAGGCATAAATGCTTTTA
CATCTTTAGCGTCTTCATTCACATCATTTCTCACATCAAAAATATAAAAAATTTATTCATCGGGG
ACACTCCAACCCCATTCCTCCGAGGAGACACTCCAACCTCATTTTCAACCAAAAATTAAATTCCA
TTTTCTCTCCCACATTTCGAGTCAAACTCGTTTTCGAACTTCAACGAATCAAAGAATCCAGATAA
ATCTCTAAATTATCTATCCGATTATTTCAAGATAATCGGTGGCAATTAGGGTCACCTCGAGGTAC
TCGGATATCCTTCTCGGATATCTCGGATA
Found at i:2823544 original size:4 final size:4
Alignment explanation
Indices: 2823537--2823563 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
2823527 CAAAACAAAC
2823537 AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAA
2823564 CACCTCAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:2825723 original size:51 final size:51
Alignment explanation
Indices: 2825655--2825819 Score: 206
Period size: 51 Copynumber: 3.2 Consensus size: 51
2825645 ATAACAGGGC
* * * * * ***
2825655 TGGAGTATCTCCAATTGTGGAAAATCGATGCTTTAGAAATAAGGCCGGGGT
1 TGGAGTATCCCCGATTGTGGAAAATTGGTGTTTTAGAAATAAAATCGGGGT
* *
2825706 TGGAGTATCCCCGATTGT-GAGAAATTGGTGTTTTGGAAATAAAATCGGAGT
1 TGGAGTATCCCCGATTGTGGA-AAATTGGTGTTTTAGAAATAAAATCGGGGT
* *
2825757 TGGAGTATCCCCGATTGTGGGAAATTGGTATTTTAGAAATAAAATCGGGGT
1 TGGAGTATCCCCGATTGTGGAAAATTGGTGTTTTAGAAATAAAATCGGGGT
2825808 TGGAGTATCCCC
1 TGGAGTATCCCC
2825820 TCGAAAATAA
Statistics
Matches: 98, Mismatches: 14, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
50 2 0.02
51 95 0.97
52 1 0.01
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (51 bp):
TGGAGTATCCCCGATTGTGGAAAATTGGTGTTTTAGAAATAAAATCGGGGT
Found at i:2825838 original size:28 final size:29
Alignment explanation
Indices: 2825802--2825875 Score: 91
Period size: 28 Copynumber: 2.6 Consensus size: 29
2825792 GAAATAAAAT
2825802 CGGGGTTGGAGTATCCCCTCGA-AAATAA
1 CGGGGTTGGAGTATCCCCTCGAGAAATAA
* *
2825830 CGGGATTGGAGTAT--CCTCGATGACATAA
1 CGGGGTTGGAGTATCCCCTCGA-GAAATAA
*
2825858 CGGGGTTGGAGTACCCCC
1 CGGGGTTGGAGTATCCCC
2825876 GATTATGAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
26 6 0.16
28 30 0.79
30 2 0.05
ACGTcount: A:0.24, C:0.23, G:0.31, T:0.22
Consensus pattern (29 bp):
CGGGGTTGGAGTATCCCCTCGAGAAATAA
Found at i:2825900 original size:107 final size:107
Alignment explanation
Indices: 2825785--2825995 Score: 309
Period size: 107 Copynumber: 2.0 Consensus size: 107
2825775 GGGAAATTGG
* * *
2825785 TATTTTAGAAATAAAATCGGGGTTGGAGTATCCCCTCGAAAATAAC-GGGATTGGAGTATCCTCG
1 TATTTTAGAAATAAAATCGGGGTTAGAGTATCCCCTCGAAAATAACAGGG-TTAGAGTATCCCCG
* *
2825849 ATGACATAACGGGGTTGGAGTACCCCC-GATTATGAAAAATCAA
65 ATGAAATAACGAGGTTGGAGTACCCCCAG-TTATGAAAAATCAA
* *
2825892 TATTTTAGATATAAAGTCGGGGTTAGAGTATCCCCTCGAAAATAACAGGGTTAGAGTATCCCCGA
1 TATTTTAGAAATAAAATCGGGGTTAGAGTATCCCCTCGAAAATAACAGGGTTAGAGTATCCCCGA
* *
2825957 TGAAATAACGAGGTTGGAGTATCCCCAGTTGTGAAAAAT
66 TGAAATAACGAGGTTGGAGTACCCCCAGTTATGAAAAAT
2825996 TTAGAAATTT
Statistics
Matches: 93, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
107 89 0.96
108 4 0.04
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.26
Consensus pattern (107 bp):
TATTTTAGAAATAAAATCGGGGTTAGAGTATCCCCTCGAAAATAACAGGGTTAGAGTATCCCCGA
TGAAATAACGAGGTTGGAGTACCCCCAGTTATGAAAAATCAA
Found at i:2825962 original size:28 final size:27
Alignment explanation
Indices: 2825911--2825982 Score: 85
Period size: 28 Copynumber: 2.6 Consensus size: 27
2825901 TATAAAGTCG
2825911 GGGTTAGAGTATCCCCTCGAAAATAAC
1 GGGTTAGAGTATCCCCTCGAAAATAAC
2825938 AGGGTTAGAGTAT-CCC-CGATGAAATAAC
1 -GGGTTAGAGTATCCCCTCGA--AAATAAC
*
2825966 GAGGTTGGAGTATCCCC
1 G-GGTTAGAGTATCCCC
2825983 AGTTGTGAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
26 3 0.08
27 4 0.10
28 29 0.74
29 3 0.08
ACGTcount: A:0.31, C:0.21, G:0.26, T:0.22
Consensus pattern (27 bp):
GGGTTAGAGTATCCCCTCGAAAATAAC
Found at i:2827099 original size:20 final size:20
Alignment explanation
Indices: 2827074--2827121 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
2827064 AAATCTGATT
2827074 TTGGCACACAAATAAGCATC
1 TTGGCACACAAATAAGCATC
* *
2827094 TTGGCACATAAATAAGCATG
1 TTGGCACACAAATAAGCATC
2827114 TTGGCACA
1 TTGGCACA
2827122 AACAACATGC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.38, C:0.21, G:0.19, T:0.23
Consensus pattern (20 bp):
TTGGCACACAAATAAGCATC
Found at i:2828323 original size:20 final size:20
Alignment explanation
Indices: 2828298--2828352 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 20
2828288 AAAATGCCTG
*
2828298 AATATATCGATACATTGTAA
1 AATATATCGATACATTGCAA
*
2828318 AATATATCGATACAATGCAA
1 AATATATCGATACATTGCAA
* *
2828338 AATGTATTGATACAT
1 AATATATCGATACAT
2828353 CTGGGTAAAC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.45, C:0.11, G:0.11, T:0.33
Consensus pattern (20 bp):
AATATATCGATACATTGCAA
Found at i:2828392 original size:12 final size:13
Alignment explanation
Indices: 2828367--2828395 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
2828357 GTAAACCTAG
2828367 AATGTATCGATAC
1 AATGTATCGATAC
2828380 AATGTAT-GATAC
1 AATGTATCGATAC
2828392 AATG
1 AATG
2828396 GACAATGTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.56
13 7 0.44
ACGTcount: A:0.41, C:0.10, G:0.17, T:0.31
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:2828415 original size:20 final size:20
Alignment explanation
Indices: 2828378--2828433 Score: 87
Period size: 20 Copynumber: 2.9 Consensus size: 20
2828368 ATGTATCGAT
*
2828378 ACAATGTAT-GATACAATGG
1 ACAATGTATCGATACAATGA
*
2828397 ACAATGTATCGATATAATGA
1 ACAATGTATCGATACAATGA
2828417 ACAATGTATCGATACAA
1 ACAATGTATCGATACAA
2828434 ATTGTGAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 9 0.27
20 24 0.73
ACGTcount: A:0.45, C:0.12, G:0.16, T:0.27
Consensus pattern (20 bp):
ACAATGTATCGATACAATGA
Found at i:2828641 original size:13 final size:13
Alignment explanation
Indices: 2828623--2828649 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
2828613 GTCCTTTTTT
2828623 GCATCCCGAACAC
1 GCATCCCGAACAC
2828636 GCATCCCGAACAC
1 GCATCCCGAACAC
2828649 G
1 G
2828650 TCCCCATACC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.44, G:0.19, T:0.07
Consensus pattern (13 bp):
GCATCCCGAACAC
Found at i:2829116 original size:53 final size:53
Alignment explanation
Indices: 2829058--2829164 Score: 196
Period size: 53 Copynumber: 2.0 Consensus size: 53
2829048 TTAATTTAAG
* *
2829058 AAAGACAATGGAGAAAGAAATCGCCATATTCTACCAACAAGTTTCCTTTCCCT
1 AAAGACAATGGAAAAAGAAATCGCCATATTCGACCAACAAGTTTCCTTTCCCT
2829111 AAAGACAATGGAAAAAGAAATCGCCATATTCGACCAACAAGTTTCCTTTCCCT
1 AAAGACAATGGAAAAAGAAATCGCCATATTCGACCAACAAGTTTCCTTTCCCT
2829164 A
1 A
2829165 TTTAGTATTG
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.39, C:0.24, G:0.13, T:0.23
Consensus pattern (53 bp):
AAAGACAATGGAAAAAGAAATCGCCATATTCGACCAACAAGTTTCCTTTCCCT
Found at i:2829316 original size:31 final size:32
Alignment explanation
Indices: 2829247--2829323 Score: 88
Period size: 31 Copynumber: 2.5 Consensus size: 32
2829237 GGAGTTCAGC
*
2829247 AAAAA-AAAAAAGA-GAGAAAAGAGAGAAAGA
1 AAAAAGAAAAAATAGGAGAAAAGAGAGAAAGA
* *
2829277 AAAAAGAAAAAATAGGAGAAAATATAGAAA-A
1 AAAAAGAAAAAATAGGAGAAAAGAGAGAAAGA
* *
2829308 AAATAGAAAAACTAGG
1 AAAAAGAAAAAATAGG
2829324 CTAGTTTTCT
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
30 5 0.12
31 22 0.55
32 13 0.32
ACGTcount: A:0.73, C:0.01, G:0.19, T:0.06
Consensus pattern (32 bp):
AAAAAGAAAAAATAGGAGAAAAGAGAGAAAGA
Found at i:2829763 original size:31 final size:31
Alignment explanation
Indices: 2829728--2829789 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
2829718 GTCGAAACTT
2829728 GTTGAATCATTGTCTTGCTTGCTTAAACAGG
1 GTTGAATCATTGTCTTGCTTGCTTAAACAGG
2829759 GTTGAATCATTGTCTTGCTTGCTTAAACAGG
1 GTTGAATCATTGTCTTGCTTGCTTAAACAGG
2829790 CTGGTTGGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.16, G:0.23, T:0.39
Consensus pattern (31 bp):
GTTGAATCATTGTCTTGCTTGCTTAAACAGG
Found at i:2834124 original size:13 final size:13
Alignment explanation
Indices: 2834106--2834132 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
2834096 ACATTATGCT
2834106 TTGTATCGATACA
1 TTGTATCGATACA
2834119 TTGTATCGATACA
1 TTGTATCGATACA
2834132 T
1 T
2834133 GATCATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:2834129 original size:33 final size:32
Alignment explanation
Indices: 2834087--2834151 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 32
2834077 CACACCAAGA
* * *
2834087 TGTATCGATACATTATGCTTTGTATCGATACAT
1 TGTATCGATACATGAT-CATTGTATCAATACAT
2834120 TGTATCGATACATGATCATTGTATCAATACAT
1 TGTATCGATACATGATCATTGTATCAATACAT
2834152 GGACCATTGT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 14 0.48
33 15 0.52
ACGTcount: A:0.31, C:0.15, G:0.14, T:0.40
Consensus pattern (32 bp):
TGTATCGATACATGATCATTGTATCAATACAT
Found at i:2834161 original size:20 final size:20
Alignment explanation
Indices: 2834116--2834192 Score: 111
Period size: 20 Copynumber: 3.9 Consensus size: 20
2834106 TTGTATCGAT
2834116 ACATTGTATCGATACAT-GA
1 ACATTGTATCGATACATGGA
* *
2834135 TCATTGTATCAATACATGGA
1 ACATTGTATCGATACATGGA
*
2834155 CCATTGTATCGATACATGGA
1 ACATTGTATCGATACATGGA
*
2834175 AAATTGTATCGATACATG
1 ACATTGTATCGATACATG
2834193 AAACTAGCAG
Statistics
Matches: 51, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
19 15 0.29
20 36 0.71
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.32
Consensus pattern (20 bp):
ACATTGTATCGATACATGGA
Found at i:2834258 original size:13 final size:13
Alignment explanation
Indices: 2834237--2834267 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
2834227 CGATACATGG
*
2834237 TACAATGTATCGA
1 TACATTGTATCGA
2834250 TACATTGTATCGA
1 TACATTGTATCGA
2834263 TACAT
1 TACAT
2834268 GATGAAATGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.35
Consensus pattern (13 bp):
TACATTGTATCGA
Found at i:2842388 original size:475 final size:474
Alignment explanation
Indices: 2839183--2844507 Score: 5581
Period size: 475 Copynumber: 11.3 Consensus size: 474
2839173 AGGAATCAAA
* * * * *
2839183 GTTTGTCCCATTTTGAGGTACGAACTTAAACTTTACAAAACATTGTGGGAAAAAAGCCTTTCTTG
1 GTTTGTCTCA-TTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTG
* * ** ** *
2839248 -TGAAACGAAAGCATCAATGTTATGTATCCTATTGAGAAGACAATGTTTATGGTGCCGAAT-CTA
65 CT-AAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTTATCCTG
*
2839311 AAAAGAATGGGGAATTAGTATGAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTA
129 AAAAGAATGGGG-ATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
* *** * *
2839376 TCAAAAATGGTGG--GAAAAAGTTTTTCTAATGACCCCAAAGCATCAATTTCATGTATCATAATG
193 TCAAAAA-GGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAATG
* * *
2839439 AAGGGAATGTGTTTTGGCTCCGATTCTTGTAAAGAATGGAG-TGTGATTGCAAGAATCGATGCTT
257 AAGGGAATGTGTTTTGGCTCCAATTCTTGTAAAGAATGGAGAT-TG-TTACGAGAATCGATGCTT
2839503 GTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAA
320 GTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAA
* * *
2839568 AGCAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATACTGCCTAACCACAAAATG
385 AGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG
*
2839633 AAAGAAGATCATTACTAGAATCCAT
450 AATGAAGATCATTACTAGAATCCAT
* * * * * * * *
2839658 GTGTTGCTTTGTGCTTTTGATGCATGAACTTAGGCTTTGCATAAAATGGTGGGAAAAAAACCTTT
1 GT-TTG---TCT-CATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCCTTT
* * * ** *
2839723 TTTG-TGAAACGAAAGCATCGATATAATGTATTGTAAAGAGAAGACTATGTTTAT-GTGCCTTAT
61 CTTGCT-AAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTTAT
* * **
2839786 CCT-AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTACTTAGGAGACATGCTTTGATT
125 CCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
* *
2839850 CTA-CAACAAAATGGTGGAAGGAAAAGTTTTTCTTGCGACACC-ATGCATCAATTTTCA-G-AAC
190 CTATC-A-AAAA-GGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAA-TTTCATGTATC
* * * ** *
2839911 CTAATGAAGGGAATGTG---TGGCTTCACAA-GCTTGGAAAGAACT-GATACCGTGACGAGAATC
251 CTAATGAAGGGAATGTGTTTTGGC-TC-CAATTCTTGTAAAGAA-TGGAGATTGTTACGAGAATC
* * *
2839971 GATGCTTGT-TTCTTTAAGGGATGGAACTTTGATTTAAAGGAAAAGAGGGCAAAGAAAAGATTTT
313 GATGCTTGTCTTATTTAAGGGAT-GAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTC
* *
2840035 CACGC-AAA-AAAATCATC-ATATTATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC
377 CATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC
*
2840097 AC-AAATGAATGATGATCA-TACTAG-ATCCAT
442 ACAAAATGAATGAAGATCATTACTAGAATCCAT
* * ** *
2840127 G-TTCTCT-ATTTAAGGCACGAACTTAGACTTTA-AAAATTTGGTGGG-AAAAAGCCTTTTTTGC
1 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTGC
* * * * * *
2840188 GAAATGAAAAGCACCAATACGATGTATCCTAAAGAGAAGACAATGTTTATTTGTG--TTATCTTG
66 TAAACG-AAAGCATCAATATGATGTATCCTAAAGAGAAGACAATGTTTA-TGGTGCCTTATCCTG
* * *
2840251 AAAAGAAT--GG-TTAGTATGAGTATT-ATGTTTGTCTTAATTAAAAGACAAACTTTGATTTTAT
129 AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * *
2840312 CAGAACGGTGGAA-GAAAATGTTTTTCTTGCGACCCCAAAGCATCAATTTCA--TAT--TAA--A
194 CAAAAAGGTGGAAGGAAAA-GTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAATGA
* * *** * *
2840370 AGGGAATGTGTTTTGGCTTTACAA-TCTTGAAAAGAACT-GAGGCAGTTATGAGAATTGATGCTT
258 AGGGAATGTGTTTTGGC--TCCAATTCTTGTAAAGAA-TGGAGATTGTTACGAGAATCGATGCTT
* * *
2840433 GTCTTATTTAGGGGATGAACTTTGAATTT-AGGGAAAAT--GGCAAAGAAATGATTTCCATGCAA
320 GTCTTATTTAAGGGATGAACTTTG-ATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAA
* * * *
2840495 AAGAAAATCATCAATTTCATTTATGCTAAT-AGGGGGAA--TG-TTCTAGTGCCTAATCACAAAA
384 AAGAAAATCATCAATATCATTTATCCTAATGA-GGAGAATGTGTTTATAGTGCCTAATCACAAAA
* * * *
2840556 TG-ATGAAGATTATTACCAGAATCTAA
448 TGAATGAAGATCATTACTAGAATCCAT
* * * * *
2840582 ATTTGT-TCATATGAGGCACGTACTGAAGACTTTACAAAAAATGGTTGGAAAAAAGCCTTTCTT-
1 GTTTGTCTCATTTGAGGCACGAACT-TAGACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTG
* * * * *
2840645 ATGAAATGAAAAGTATCAATATGATGTATCCTAAAGAGAAAACTATGTTTATGGTGCCTTATCCT
65 CT-AAACG-AAAGCATCAATATGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTTATCCT
* * * *
2840710 GAAAAGACT-AGGATTAGTATGAGT-TTCATGTTTGTCTT-TTTGAGAGA-AAGAGTTTGATTCT
128 GAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA-ACTTTGATTCT
* *
2840771 ATCAAAAACGATGGAAGG-AAAGTTTTTCTTGCGA-ACCCAAAGAATCAATTTCATGTATCCTAA
192 ATCAAAAA-GGTGGAAGGAAAAGTTTTTCTTGCGACA-CCAAAGCATCAATTTCATGTATCCTAA
* *
2840834 TGAAGGGAATGTGTTTTGGCTCCGATTCTCGTAAAGAATGGAGATTGTTACGAGAAT-GATTGCT
255 TGAAGGGAATGTGTTTTGGCTCCAATTCTTGTAAAGAATGGAGATTGTTACGAGAATCGA-TGCT
* * * * * *
2840898 TATCTTATTTAAGGTATGAACATTGATTTAAAGGAAAAT-TGGC-AAGAAAAGATTCCCATCCAA
319 TGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAA
* * *
2840961 AAGAAAAAAATCATCAATATCATTTATCCTAATGAGGTGAATGTGTTTATCGTGCCTAA-C-CTA
384 AAG---AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAA
* * * *
2841024 ATTGAAAGAAGATCGTTACTA-AATTCAT
446 AATGAATGAAGATCATTACTAGAATCCAT
* * * * *
2841052 GTTTGTCTCTTTTGAAGCA-GAACTTAGATTTTAC-AAAAATGGTGGG--AGAAG-CTTTCTTGG
1 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTGC
* ** * * * * * *
2841112 GAATA-GAGCGCACCAATATGGTGTATCCTAAAGAGAAGAC-TTGTTTAT-GTGCCTAATTCAGA
66 TAA-ACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTTATCCTG-
* * *
2841174 AAAATAAT-GGGATTAGTAGACTTAGTATCCATGTTTGTCTTATTTAACGAGACAAA-TTTGATT
129 AAAAGAATGGGGATTAGT--A-TGAGTATTCATGTTTGTCTTATTTAA-GAGACAAACTTTGATT
* *
2841237 CTAACAGAAACGGTGG-AGGAAAAGTTTTTTCTTGCGACACCAAAGCATCAATTT--TGTATCTC
190 CTATCA-AAAAGGTGGAAGGAAAAG-TTTTTCTTGCGACACCAAAGCATCAATTTCATGTA--TC
* ** * ** * *
2841299 CTAATGATGGGTCTGTGTTTTGTCTCCAATTCTCATAAAGAAATGGAGATTGTT-TGAGCAAACG
251 CTAATGAAGGGAATGTGTTTTGGCTCCAATTCTTGTAAAG-AATGGAGATTGTTACGAG-AATCG
* * * * *
2841363 ATGCTTTTGTTATTTAAAGGTTGAACTTTGATTTAAAGGAAAGGAAAATTAGGG---AGAAAAGG
314 ATGCTTGTCTTATTTAAGGGATGAACTTTGATTT-----AAAGGAAAA-TAGGGCAAAGAAAAGA
* * *
2841425 TTTCCAAGCAAAAGAAATTCATC-A-ATCATTTATCTTAATGAGGAGAA--TGTTTATCA-T-CC
373 TTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTAT-AGTGCC
* * *
2841484 TAATCCACGAAATAAATGAAGATCGTTACTAGAATCCAT
437 TAAT-CACAAAATGAATGAAGATCATTACTAGAATCCAT
* * * * *
2841523 GTTTATCTCTTTTGAGGCATGAACTTAGACTTATA-AAACAATGGT-GGAAAAAAGCCTTTCTTA
1 GTTTGTCTCATTTGAGGCACGAACTTAGACTT-TACAAAAAATGGTGGGAAAAAAGCCTTTCTTG
* * * * *
2841586 CGAAATGAAAGCATCAATATGATGTATCC-AAATGAGAAGAAAATGTTTATGGTGCCTAATCCGG
65 CTAAACGAAAGCATCAATATGATGTATCCTAAA-GAGAAGACAATGTTTATGGTGCCTTATCCTG
* * *
2841650 AAAACGAAT-GGGATT-GT-TGAGTGTTCATGTTCGTCTTATTTAAGAGA-AAACTTTTA-TCTA
129 AAAA-GAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
* * * * * *
2841710 TTAAAATGGTGGAAGGAAAAGTTTTTCTTGCGACCCCCAAGACGCATTAATTTCCTGTAAACCTA
193 TCAAAAAGGTGGAAGGAAAAGTTTTTCTTGCGA-CACCAA-A-GCATCAATTTCATGT-ATCCTA
** * * * * * * * * *
2841775 ATGAAAAGATTGTGTTTTGGCT-CGATTCTCGTGAGGAGTGGAGCTTGTTACGAGGAATTGCTGC
254 ATGAAGGGAATGTGTTTTGGCTCCAATTCTTGTAAAGAATGGAGATTGTTACGA-GAATCGATGC
* * *
2841839 TTGTTTTATTT-AGGGAATGACACTTTGATTT-AAGGAAAA-AGGTCAAAGAAAAGATTTCCGTG
318 TTGTCTTATTTAAGGG-ATGA-ACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATG
* * * * *
2841901 CAAAACAAAATCATCAATATCAATAATCCTAATGAGGAGAATGCGTTTATAGTGCC-AAGTGACA
381 CAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA-TCACA
*
2841965 AAATGAATGAAGATCATTACTAGAATCCAC
445 AAATGAATGAAGATCATTACTAGAATCCAT
* * *
2841995 GTTTGTCTCATTTGAGGCACGAACTTAGACCTTA-AAAAATTTGGTGGGAAAAATGCCTTTCTTG
1 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAA-ATGGTGGGAAAAAAGCCTTTCTTG
* * * * **
2842059 CTAAACGAAAGCACCAATACGATGTATCCTAAAGAGAAGACAATGTTCATGTTGTGTTATCCTGA
65 CTAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTTATCCTGA
* *
2842124 AAAGAATGGGGATTAGTATGAGTTTTCATGTTTGTCTTATTTATGAGACAAACTTTGATTCTATC
130 AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
* * *
2842189 AAAAAGTGTGGAAGGAAAAGTTTTTCTTCCAACACCAAAGCATCAATTTCCTGTATCCTAATGAA
195 AAAAAG-GTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAATGAA
* * * * *
2842254 GGAAATGTGTTTTGGCTCCAATTCTTGTAAAGAATAGAGATTGTTACGAGAAACAATGCTTATCT
259 GGGAATGTGTTTTGGCTCCAATTCTTGTAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCT
* * *
2842319 TATTTAGGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAATGAA
324 TATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAA
* * *
2842384 AATCATCAATATCATTTATCCTAATGAGGAGAATGCGTTTATAGTGCCTAACCACAAAATGAAAG
389 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
2842449 AAGATCATTACTAGAATCCAT
454 AAGATCATTACTAGAATCCAT
* ** *
2842470 GTTTGTCAT-TTTTGAAACACGAACTTAGACTTTACAAAAAATGGTAGGAAAAAAGCCTTTCTTG
1 GTTTGTC-TCATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTG
* * * *
2842534 CAAAACGAAAGCATCAATATGATGTATCATAAAGAGAAGACTATGTTTATGGTGCCTTATCCTAA
65 CTAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTTATCCTGA
2842599 AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
130 AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
* *** * * * *
2842664 AAAAACGGTGGAA-AAAAAGTTTTTCTAATGACCCCAAAGCATAAATTTCATGTAACCTAAAGAA
195 AAAAA-GGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAATGAA
* * * * * * *
2842728 GGAAATGTGTTTTGGGTTCACAA-TCTTGGAAAGAACT-GACACAT-TTACGAGAATCGGTGTTT
259 GGGAATGTGTTTT-GGCTC-CAATTCTTGTAAAGAA-TGGAGA-TTGTTACGAGAATCGATGCTT
*
2842790 GTCTTATTTAAGAGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAA
320 GTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAA
*
2842855 AGAAAATTATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG
385 AGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG
** * *
2842920 AATGAAGATTGTTACTAGAATCAAC
450 AATGAAGATCATTACTAGAATCCAT
* * *
2842945 GTTTGTCTCATTTGAGGTACGAACTTAAACTTTACAAAAAATGGTGGGAAAAAAGCTTTTCTTG-
1 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTGC
* ** * ** *
2843009 TGAAACGAAAGCATCAATGTGATGTATCCTATTGAGAAGACAATGTTTATGGTGTCGAATCCAGA
66 T-AAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTTATCCTGA
* *
2843074 AAAG-ATGGGGATTAGCATGAGTATTCATGTTTGTCTTATTTAAGAGATAAACTTT-ATTCTATC
130 AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
***
2843137 AAAAACGGTGGAA--AAAAGTTTTTCTAATGAC-CACAAAGCATCAATTTCATGTATCCTAATGA
195 AAAAA-GGTGGAAGGAAAAGTTTTTCTTGCGACAC-CAAAGCATCAATTTCATGTATCCTAATGA
* * * * *
2843199 AGGGAATGTGTTTTAGCTCCAATTCTTGTAAATAATGGAGTTTGATACAAGAATCGATGCTTGTC
258 AGGGAATGTGTTTTGGCTCCAATTCTTGTAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTC
2843264 TTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
323 TTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
* * *
2843329 AAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAACCACAAAATGAAA
388 AAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
2843394 GAAGATCATTACTAGAATCCAT
453 GAAGATCATTACTAGAATCCAT
* * * *
2843416 GTTTGT-TGCTTTTGATGCACGAACTTAGACTTTACATAAAATGGTGGGGAAAAAAAGCTTTTCT
1 GTTTGTCT-CATTTGAGGCACGAACTTAGACTTTACAAAAAATGGT-GGG-AAAAAAGCCTTTCT
* ** ** *
2843480 TG-TGAAACGAAAGCATCAATATAACATATTGTAAAGAGAAGACTATGTTTATGGTGCCTTATCC
63 TGCT-AAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTTATCC
* * * * * ***
2843544 TAAAAAAAATGGGGGATTAGTATGAGTATTCATGTTTGTCTTACTTAGGAGATTAGGTTTTGATT
127 TGAAAAGAAT-GGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGA-CAAACTTTGATT
* * *
2843609 CTAACAAAAATGGTGGAAGGAAAAG-TTTTCTTGCGACACCAAAGCATCAATTTAATGTAACCTA
190 CTATCAAAAA-GGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTA
* * * ** *
2843673 ATGAAGGGAATGTGTATTGGCTTCACAA-TCTTGGAAAGAACT-GACACAGTTACAAGAATCGAT
254 ATGAAGGGAATGTGTTTTGGC-TC-CAATTCTTGTAAAGAA-TGGAGATTGTTACGAGAATCGAT
* * * *
2843736 GCTTGTTTTCTTTAAAGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTTCATG
316 GCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATG
*
2843801 CAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGCGTTTATAGTGCCTAATCACAA
381 CAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAA
*
2843866 AATGAATGATGATCATTACTAGAATCCAT
446 AATGAATGAAGATCATTACTAGAATCCAT
* * * *
2843895 GTTTCTCTCATTTAAGGCACGAGCTTAGACTTTA-AAAAATTTGGTGGGAAAAAAGCCCTTTCTT
1 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAA-ATGGTGGGAAAAAAG-CCTTTCTT
* * * * ** *
2843959 GCGAAACGAAAAGCAACAATACGATGTATCCTAAAGAGAAGACAATGTTTATGTTTGTGTTATGC
64 GCTAAACG-AAAGCATCAATATGATGTATCCTAAAGAGAAGACAATGTTTATG-GTGCCTTATCC
2844024 TGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
127 TGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
* * *
2844089 ATCAGAAACGGTGGAAGGAAATG-TTTTCTTGCGACACCAAAGCATCAATTTCA--TAT-AT-AT
192 ATCA-AAAAGGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAAT
* * * * * *
2844149 AAAGGGAATGTGTTTTGGCTTTACAA-TCTTG-AAAGAACTGAGGGGGTAGTTACGAGAATTGAT
256 GAAGGGAATGTGTTTTGGC--TCCAATTCTTGTAAAGAA-T--GGAGATTGTTACGAGAATCGAT
* * * * *
2844212 GGTTGTCTTAATTTAGGGGATAAACTTTGAATTT-AGGGAAAATAGGGCAAAGAAATGATTTCCA
316 GCTTGTCTT-ATTTAAGGGATGAACTTTG-ATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCA
* * * * *
2844276 TGAAAAAGAAAATCATCAATTTCATTTATGCTAATGTGG-GAA--TGTTCATAGTGCCTAATCAC
379 TGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC
* *
2844338 -AAATGAATGAAGATTATTACTAGAATCCAG
444 AAAATGAATGAAGATCATTACTAGAATCCAT
* * * * **
2844368 GTTTGTCTGATATGAGGCATGGACTTAAGACTTTACAAAAAATGGTTAG-AAAAAGCCTTTCTT-
1 GTTTGTCTCATTTGAGGCACGAACTT-AGACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTG
* * * * * *
2844431 ATGAACGAAAGTATCAATATGATGTATCATAAAGAGAAAACTATGTTTATGGTGCCTTATCCTG-
65 CTAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTTATCCTGA
*
2844495 AAAGACTGGGGAT
130 AAAGAATGGGGAT
2844508 GAAAAAAAGA
Statistics
Matches: 4072, Mismatches: 586, Indels: 391
0.81 0.12 0.08
Matches are distributed among these distances:
452 11 0.00
453 43 0.01
454 18 0.00
455 75 0.02
456 81 0.02
457 18 0.00
458 45 0.01
459 71 0.02
460 36 0.01
461 105 0.03
462 69 0.02
463 28 0.01
464 30 0.01
465 27 0.01
466 85 0.02
467 56 0.01
468 81 0.02
469 149 0.04
470 196 0.05
471 312 0.08
472 279 0.07
473 288 0.07
474 245 0.06
475 811 0.20
476 88 0.02
477 191 0.05
478 200 0.05
479 390 0.10
480 44 0.01
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (474 bp):
GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTGC
TAAACGAAAGCATCAATATGATGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTTATCCTGAA
AAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
AAAAGGTGGAAGGAAAAGTTTTTCTTGCGACACCAAAGCATCAATTTCATGTATCCTAATGAAGG
GAATGTGTTTTGGCTCCAATTCTTGTAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTA
TTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
TCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAA
GATCATTACTAGAATCCAT
Found at i:2842681 original size:158 final size:154
Alignment explanation
Indices: 2842037--2844104 Score: 400
Period size: 158 Copynumber: 13.0 Consensus size: 154
2842027 TAAAAAATTT
* * * * *
2842037 GGTGGGAAAAATGCCTTTCTTGCTAAACGAAAGCACCAATA-CGATGTATCCTAAAGAGAAGACA
1 GGTGGAAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATC-ATGTATCCTAAAGAGAAGACT
* * * * *
2842101 ATGTTCATGTTGTG-TTATCCTGAAAAGAATGGGGATTAGTATGAGTTTTCATGTTTGTCTTATT
65 ATGTTTATG--GTGCCTATCCTAAAAAGAATGGAGATTAGTATGAGTATTCATGTTTGTCTTATT
*
2842165 TATGAGACAAACTTTGATTCTATCAAAAA
128 TAAGAGACAAACTTTGATT-TA-CAAAAA
* ** * * * * * *
2842194 GTGTGGAAGGAAAAGTTTTTCTTCCAACACCAAAGCATCAATTTCCTGTATCCTAATGAAGGAA-
1 G-GTGGAA-AAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATCATGTATCCTAAAG-A-GAAG
* * * ** * * ** * *
2842258 A-TGTGTTT-TGGCT-CCAATTCTTGTAAAGAATAGAGATT-GTTACGAG-AAACAATGCTTATC
62 ACTATGTTTATGG-TGCCTA-TCCTAAAAAGAATGGAGATTAG-TATGAGTATTC-ATGTTTGTC
* * ** *
2842318 TTATTTAGGGGATGAACTTTGATTTAAAGGAAAATA
123 TTATTTAAGAGACAAACTTTGATTT--A-CAAAA-A
* ** * * * * * * *
2842354 GG-GCAAAGAAAAGATTTTCATGC-AAATGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
1 GGTGGAAA-AAAAGCCTTTCTTGCAAAACG-AAAGCATCAATATCATGTATCCTAAAGAGAAGAC
** * * * * * * * *
2842417 TGCGTTTATAGTGCCTAACC-ACAAAATGAAAGAAGATCATTACT-AGAATCCATGTTTGTCATT
64 TATGTTTATGGTGCCTATCCTA-AAAA-GAATGGAGATTAGTA-TGAGTATTCATGTTTGTC-TT
* * *
2842480 -TTTGAA-ACACGAACTTAGACTTTACAAAAAA
125 ATTT-AAGAGACAAACTTTGA-TTTAC-AAAAA
* *
2842511 TGGTAGG-AAAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATGATGTATCATAAAGAGAAGAC
1 -GGT-GGAAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATCATGTATCCTAAAGAGAAGAC
*
2842575 TATGTTTATGGTGCCTTATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATT
64 TATGTTTATGGTGCC-TATCCTAAAAAGAATGGAGATTAGTATGAGTATTCATGTTTGTCTTATT
2842640 TAAGAGACAAACTTTGATTCTATCAAAAA
128 TAAGAGACAAACTTTGATT-TA-CAAAAA
** ** * * * *
2842669 CGGTGGAAAAAAAGTTTTTCTAATG--ACCCCAAAGCATAAATTTCATGTAACCTAAAGAAGGAA
1 -GGTGGAAAAAAAGCCTTTCT--TGCAAAACGAAAGCATCAATATCATGTATCCTAAAG-A-GAA
* * * * ** * * * * *
2842732 -A-TGTGTTT-TGGGTTCACAATCTTGGAAAGAACTGACACATT--TACGAG-AATCGGTGTTTG
61 GACTATGTTTAT-GGTGC-CTATCCTAAAAAGAA-TG-GAGATTAGTATGAGTATTC-ATGTTTG
** *
2842791 TCTTATTTAAGAGATGAACTTTGATTTAAAGGAAAATA
121 TCTTATTTAAGAGACAAACTTTGATTT--A-CAAAA-A
* * * ** * * *
2842829 GG-GCAAAGAAAAG-ATTTCCATGCAAAA-GAAAATTATCAATATCATTTATCCTAATGAGGAGA
1 GGTGGAAA-AAAAGCCTTT-CTTGCAAAACG-AAAGCATCAATATCATGTATCCTAAAGAGAAGA
* * * * * * *
2842891 ATGTGTTTATAGTGCCTAATCAC-AAAATGAATGAAGATT-GTTACT-AG-AATCAACGTTTGTC
63 CTATGTTTATGGTGCCT-ATC-CTAAAAAGAATGGAGATTAG-TA-TGAGTATTC-ATGTTTGTC
* * * **
2842952 TCATTTGAG-GTACGAACTTAAACTTTACAAAAAA
123 TTATTTAAGAG-ACAAACTTTGA-TTTAC-AAAAA
* * ** * * ** *
2842986 TGGTGGGAAAAAAGCTTTTCTTGTGAAACGAAAGCATCAATGTGATGTATCCTATTGAGAAGACA
1 -GGTGGAAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATCATGTATCCTAAAGAGAAGACT
** * *
2843051 ATGTTTATGGTGTCGAATCC-AGAAAAG-ATGGGGATTAGCATGAGTATTCATGTTTGTCTTATT
65 ATGTTTATGGTG-CCTATCCTA-AAAAGAATGGAGATTAGTATGAGTATTCATGTTTGTCTTATT
*
2843114 TAAGAGATAAACTTT-ATTCTATCAAAAA
128 TAAGAGACAAACTTTGATT-TA-CAAAAA
** ** * * *
2843142 CGGTGG-AAAAAAGTTTTTCTAATG-ACCAC-AAAGCATCAATTTCATGTATCCTAATGA-AGGG
1 -GGTGGAAAAAAAGCCTTTCT--TGCAAAACGAAAGCATCAATATCATGTATCCTAAAGAGA-AG
* * * * * ** * * ** * *
2843203 AATGTGTTT-TAGCT-CCAATTCTTGTAAATAATGGAG-TTTGATACAAG-AATCGATGCTTGTC
62 ACTATGTTTAT-GGTGCCTA-TCCTAAAAAGAATGGAGATTAG-TATGAGTATTC-ATGTTTGTC
* ** *
2843264 TTATTTAAGGGATGAACTTTGATTTAAAGGAAAATA
123 TTATTTAAGAGACAAACTTTGATTT--A-CAAAA-A
* * * * * *
2843300 GG-GCAAAGAAAAG-ATTTCCATGCAAAA-GAAAATCATCAATATCATTTATCCTAATA-AGGAG
1 GGTGGAAA-AAAAGCCTTT-CTTGCAAAACG-AAAGCATCAATATCATGTATCCTAA-AGAGAAG
* * * * * * * * * *
2843361 AATGTGTTTATAGTGCCTAACC-ACAAAATGAAAGAAGATCATTACT-AGAATCCATGTTTGTTG
62 ACTATGTTTATGGTGCCTATCCTA-AAAA-GAATGGAGATTAGTA-TGAGTATTCATGTTTG-T-
* * * * *
2843424 CTT-TTGATG-CACGAACTTAGACTTTACATAAAA
122 CTTATTTAAGAGACAAACTTTGA-TTTACA-AAAA
* ** * ** **
2843457 TGGTGGGGAAAAAAAGCTTTTCTTGTGAAACGAAAGCATCAATATAACATATTGTAAAGAGAAGA
1 -GGT--GGAAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATCATGTATCCTAAAGAGAAGA
* *
2843522 CTATGTTTATGGTGCCTTATCCTAAAAAAAATGGGGGATTAGTATGAGTATTCATGTTTGTCTTA
63 CTATGTTTATGGTGCC-TATCCTAAAAAGAAT-GGAGATTAGTATGAGTATTCATGTTTGTCTTA
* * * ***
2843587 CTTAGGAGATTAGGTTTTGATTCTAACAAAAA
126 TTTAAGAGA-CAAACTTTGATT-T-ACAAAAA
* * * * * * * * * *
2843619 TGGTGGAAGGAAAAG-TTTTCTTGCGACACCAAAGCATCAATTTAATGTAACCTAATGA-AGGGA
1 -GGTGGAA-AAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATCATGTATCCTAAAGAGA-AGA
* * * * ** * * ** * *
2843682 --ATGTGTATTGGCTTCACAATCTTGGAAAGAACT-GACA-CAGTTACAAG-AATCGATGCTTGT
63 CTATGTTTA-TGG-TGC-CTATCCTAAAAAGAA-TGGAGATTAG-TATGAGTATTC-ATGTTTGT
* * ** *
2843742 TTTCTTTAA-AGGATGAACTTTGATTTAAAGGAAAATA
122 CTTATTTAAGA-GACAAACTTTGATTT--A-CAAAA-A
* ** * * * * * *
2843779 GG-GCAAAGAAAAGATTTTCATGCAAAA-GAAAATCATCAATATCATTTATCCTAATGAGGAGAA
1 GGTGGAAA-AAAAGCCTTTCTTGCAAAACG-AAAGCATCAATATCATGTATCCTAAAGAGAAGAC
** * * * * * * * *
2843842 TGCGTTTATAGTGCCTAATCAC-AAAATGAAT-GATGATCATTACT-AGAATCCATGTTTCTCTC
64 TATGTTTATGGTGCCT-ATC-CTAAAAAGAATGGA-GATTAGTA-TGAGTATTCATGTTTGTCTT
* * *
2843904 ATTTAAG-GCACGAGCTTAGACTTTA-AAAAA
125 ATTTAAGAG-ACAAACTTTGA-TTTACAAAAA
* * *
2843934 TTTGGTGGGAAAAAAGCCCTTTCTTGCGAAACGAAAAGCAACAATA-CGATGTATCCTAAAGAGA
1 ---GGTGGAAAAAAAG-CCTTTCTTGCAAAACG-AAAGCATCAATATC-ATGTATCCTAAAGAGA
* * * * *
2843998 AGACAATGTTTATGTTTGTG-TTATGCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGT
60 AGACTATGTTTATG---GTGCCTATCCTAAAAAGAATGGAGATTAGTATGAGTATTCATGTTTGT
*
2844062 CTTATTTAAGAGACAAACTTTGATTCTATCAGAAAC
122 CTTATTTAAGAGACAAACTTTGATT-TA-CA-AAAA
2844098 GGTGGAA
1 GGTGGAA
2844105 GGAAATGTTT
Statistics
Matches: 1352, Mismatches: 386, Indels: 342
0.65 0.19 0.16
Matches are distributed among these distances:
153 3 0.00
154 13 0.01
155 85 0.06
156 29 0.02
157 87 0.06
158 473 0.35
159 336 0.25
160 192 0.14
161 107 0.08
162 17 0.01
163 7 0.01
164 3 0.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (154 bp):
GGTGGAAAAAAAGCCTTTCTTGCAAAACGAAAGCATCAATATCATGTATCCTAAAGAGAAGACTA
TGTTTATGGTGCCTATCCTAAAAAGAATGGAGATTAGTATGAGTATTCATGTTTGTCTTATTTAA
GAGACAAACTTTGATTTACAAAAA
Found at i:2847993 original size:142 final size:142
Alignment explanation
Indices: 2847728--2847990 Score: 501
Period size: 142 Copynumber: 1.8 Consensus size: 142
2847718 ATAACAAAAA
2847728 GGGGAGAAATATTGTTTTGAAAATAAATTTATATCTAGGGGGAGAAAATCTCTTTAACCAATTTT
1 GGGGAGAAATATTGTTTTGAAAATAAATTTATATCTAGGGGGAGAAAATCTCTTTAACCAATTTT
2847793 CAAGGGGGAGAAAAGTTTTTAAGAGGGAGAAAATCTTTTATTAAGGGGGAAAAAAATCTTTAACA
66 CAAGGGGGAGAAAAGTTTTTAAGAGGGAGAAAATCTTTTATTAAGGGGGAAAAAAATCTTTAACA
2847858 ACGATTTTCAAG
131 ACGATTTTCAAG
2847870 GGGGAGAAATATTGTTTTGAAAATAAATTTATATCTA-GGGGAGAAAATCTCTTTAACCAATTTT
1 GGGGAGAAATATTGTTTTGAAAATAAATTTATATCTAGGGGGAGAAAATCTCTTTAACCAATTTT
2847934 CAAAGGGGGAGAAAAGTTTTTAAGAGGGAGAAAAATCTTTTATTAAGGGGGAAAAAA
66 C-AAGGGGGAGAAAAGTTTTTAAGAGGGAG-AAAATCTTTTATTAAGGGGGAAAAAA
2847991 TCTCTTT
Statistics
Matches: 119, Mismatches: 0, Indels: 3
0.98 0.00 0.02
Matches are distributed among these distances:
141 28 0.24
142 65 0.55
143 26 0.22
ACGTcount: A:0.40, C:0.07, G:0.23, T:0.30
Consensus pattern (142 bp):
GGGGAGAAATATTGTTTTGAAAATAAATTTATATCTAGGGGGAGAAAATCTCTTTAACCAATTTT
CAAGGGGGAGAAAAGTTTTTAAGAGGGAGAAAATCTTTTATTAAGGGGGAAAAAAATCTTTAACA
ACGATTTTCAAG
Done.