Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold402
Parameters: 2 7 7 80 10 50 1000
Length:  85460

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
449--493
22
2.1
22
84
15
60
51
0
11
37
1.38
2764--2816
16
3.2
16
78
2
52
43
0
0
56
0.99
2757--2817
25
2.5
23
80
15
61
44
0
0
55
0.99
2775--2833
13
4.5
13
76
6
57
47
0
0
52
1.00
6088--6141
26
2.1
25
80
16
58
59
1
3
35
1.26
6791--6819
15
2.0
15
93
6
51
58
0
0
41
0.98
6848--6897
18
2.8
18
74
14
50
58
0
0
42
0.98
7196--7284
27
3.4
27
71
12
69
41
1
1
56
1.14
7228--7285
21
2.8
20
73
17
55
41
1
0
56
1.09
7243--7292
27
1.9
25
84
15
66
42
2
0
56
1.11
8228--8270
3
14.0
3
95
4
77
32
2
0
65
1.06
9195--9240
20
2.3
20
81
7
58
32
2
0
65
1.05
9609--9654
8
6.1
8
75
14
53
47
0
0
52
1.00
9628--9683
18
3.1
18
73
21
62
39
1
0
58
1.08
10887--10920
11
3.2
11
91
4
52
32
0
0
67
0.91
11339--11390
20
2.5
22
87
6
72
38
1
0
59
1.08
12877--12940
32
2.0
32
84
0
83
42
1
1
54
1.19
12898--12959
26
2.2
28
78
13
67
41
4
1
51
1.33
14758--14797
21
1.9
21
90
10
64
45
0
0
55
0.99
14750--14832
30
3.0
26
68
20
60
37
2
0
60
1.10
15308--15360
21
2.5
21
88
8
81
39
0
0
60
0.97
15302--15429
18
7.0
18
67
24
65
45
0
0
54
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15604--15642
19
2.1
19
85
9
53
20
0
0
79
0.73
15604--15653
18
2.7
18
81
9
57
24
2
0
74
0.93
16147--16201
26
2.2
25
84
12
69
61
0
1
36
1.06
16493--16544
16
3.5
15
78
17
63
50
0
0
50
1.00
16501--16550
18
3.1
18
73
26
58
46
0
0
54
1.00
16872--16925
18
3.2
18
75
17
53
50
0
0
50
1.00
18158--18182
3
8.3
3
100
0
50
68
0
0
32
0.90
19860--19889
6
5.0
6
100
0
60
50
0
0
50
1.00
21265--21292
2
14.0
2
100
0
56
50
0
0
50
1.00
24668--24746
38
2.1
38
87
0
113
22
11
18
46
1.81
32186--32247
20
3.0
21
75
17
58
41
0
1
56
1.09
34038--34090
18
2.8
18
83
16
63
62
0
0
37
0.96
36503--36545
22
2.0
22
85
0
59
53
0
0
46
1.00
37043--37077
17
2.0
18
88
5
54
65
0
0
34
0.93
37032--37079
17
2.8
17
78
15
53
62
0
0
37
0.95
38657--38714
20
2.8
20
75
19
57
44
1
0
53
1.10
38726--38808
28
2.9
29
73
10
80
32
2
1
63
1.15
39190--39226
18
2.0
19
89
5
58
54
0
0
45
1.00
40285--40333
22
2.1
22
85
11
62
40
0
10
48
1.37
48957--48990
2
17.0
2
100
0
68
50
0
0
50
1.00
49130--49168
18
2.1
19
85
4
53
17
5
0
76
0.96
49965--50005
21
2.0
21
85
9
57
48
7
2
41
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50305--50330
5
5.2
5
100
0
52
42
0
0
57
0.98
50340--50387
15
3.2
14
80
11
51
43
0
0
56
0.99
50377--50410
18
1.9
17
94
5
59
35
0
0
64
0.94
52473--52519
25
1.9
24
86
4
67
40
0
0
59
0.97
52504--52576
18
3.7
19
73
20
62
50
0
0
49
1.00
52808--52872
20
3.3
21
73
16
59
52
0
1
46
1.10
52804--52875
10
7.4
10
72
16
53
55
0
1
43
1.08
52801--52872
29
2.4
29
82
13
85
54
0
1
44
1.08
52847--52880
18
1.9
18
88
5
52
58
0
0
41
0.98
54065--54098
2
17.0
2
93
0
59
50
2
0
47
1.16
56544--56568
2
12.5
2
100
0
50
52
48
0
0
1.00
57095--57120
2
13.0
2
100
0
52
50
0
0
50
1.00
57527--57563
19
1.9
19
88
0
56
45
5
0
48
1.25
58676--58711
2
18.0
2
100
0
72
50
0
0
50
1.00
58728--58760
13
2.7
13
86
13
52
72
0
0
27
0.85
59738--59808
14
5.0
14
76
11
56
47
0
0
52
1.00
60440--60489
26
1.9
26
83
0
64
34
12
14
40
1.82
65454--65490
2
18.5
2
100
0
74
51
0
0
48
1.00
65967--65998
14
2.4
14
94
5
57
28
0
0
71
0.86
68682--68794
57
1.9
58
92
5
192
41
13
21
23
1.88
71674--71796
64
1.9
64
81
9
151
41
19
14
24
1.89
72985--73028
22
2.0
21
83
12
54
61
6
4
27
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
73614--74050
170
2.6
170
83
0
552
40
18
15
25
1.90
75031--75080
3
16.7
3
100
0
100
34
0
0
66
0.92
77692--77806
55
2.1
54
88
4
178
39
13
22
25
1.90

Tables:   1

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