Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold403
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 416698
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.33
File 1 of 4
Found at i:808 original size:20 final size:20
Alignment explanation
Indices: 785--878 Score: 170
Period size: 20 Copynumber: 4.7 Consensus size: 20
775 CACATCTAGA
785 TGTATCGATACATTATGCTT
1 TGTATCGATACATTATGCTT
805 TGTATCGATACATTATGCTT
1 TGTATCGATACATTATGCTT
*
825 TGTATCGATACAATATGCTT
1 TGTATCGATACATTATGCTT
*
845 TGTATCGATACAATATGCTT
1 TGTATCGATACATTATGCTT
865 TGTATCGATACATT
1 TGTATCGATACATT
879 GTATCGATAC
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 72 1.00
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.43
Consensus pattern (20 bp):
TGTATCGATACATTATGCTT
Found at i:882 original size:13 final size:13
Alignment explanation
Indices: 864--890 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
854 ACAATATGCT
864 TTGTATCGATACA
1 TTGTATCGATACA
877 TTGTATCGATACA
1 TTGTATCGATACA
890 T
1 T
891 GTTCATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:899 original size:19 final size:19
Alignment explanation
Indices: 875--930 Score: 85
Period size: 19 Copynumber: 2.9 Consensus size: 19
865 TGTATCGATA
875 CATTGTATCGATACATGTT
1 CATTGTATCGATACATGTT
**
894 CATTGTATCGATACACATT
1 CATTGTATCGATACATGTT
913 CAATTGTATCGATACATG
1 C-ATTGTATCGATACATG
931 AAACTGGCAG
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 18 0.56
20 14 0.44
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (19 bp):
CATTGTATCGATACATGTT
Found at i:908 original size:52 final size:53
Alignment explanation
Indices: 824--929 Score: 137
Period size: 52 Copynumber: 2.0 Consensus size: 53
814 ACATTATGCT
* *
824 TTGTATCGATACAATATGCTTTGTATCGATACA-ATATGC-TTTGTATCGATACA
1 TTGTATCGATACAATATGCATTGTATCGATACACAT-T-CAATTGTATCGATACA
* *
877 TTGTATCGATAC-ATGTTCATTGTATCGATACACATTCAATTGTATCGATACA
1 TTGTATCGATACAATATGCATTGTATCGATACACATTCAATTGTATCGATACA
929 T
1 T
930 GAAACTGGCA
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
51 1 0.02
52 32 0.68
53 14 0.30
ACGTcount: A:0.30, C:0.16, G:0.14, T:0.40
Consensus pattern (53 bp):
TTGTATCGATACAATATGCATTGTATCGATACACATTCAATTGTATCGATACA
Found at i:920 original size:20 final size:19
Alignment explanation
Indices: 766--928 Score: 83
Period size: 20 Copynumber: 8.6 Consensus size: 19
756 ATCCTATAAA
*
766 GTATCGATACACA-TCTAGAT
1 GTATCGATACACATTC-A-TT
* * *
786 GTATCGATACATTATGCTTT
1 GTATCGATACA-CATTCATT
* * *
806 GTATCGATACATTATGCTTT
1 GTATCGATACA-CATTCATT
*
826 GTATCGATACA-ATATGCTTT
1 GTATCGATACACAT-T-CATT
*
846 GTATCGATACA-ATATGCTTT
1 GTATCGATACACAT-T-CATT
866 GTATCGAT----A--CATT
1 GTATCGATACACATTCATT
**
879 GTATCGATACATGTTCATT
1 GTATCGATACACATTCATT
898 GTATCGATACACATTCAATT
1 GTATCGATACACATTC-ATT
918 GTATCGATACA
1 GTATCGATACA
929 TGAAACTGGC
Statistics
Matches: 123, Mismatches: 9, Indels: 22
0.80 0.06 0.14
Matches are distributed among these distances:
13 11 0.09
17 1 0.01
18 2 0.02
19 18 0.15
20 89 0.72
21 1 0.01
22 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.39
Consensus pattern (19 bp):
GTATCGATACACATTCATT
Found at i:3281 original size:20 final size:20
Alignment explanation
Indices: 3248--3293 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
3238 ATTTTTTTTC
*
3248 TTGA-ATCTCTATGTTCTTA
1 TTGATATCTCCATGTTCTTA
3267 TTGATATCTCCATGTTCTTA
1 TTGATATCTCCATGTTCTTA
3287 TTGATAT
1 TTGATAT
3294 TTCCTTTGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
19 4 0.16
20 21 0.84
ACGTcount: A:0.22, C:0.15, G:0.11, T:0.52
Consensus pattern (20 bp):
TTGATATCTCCATGTTCTTA
Found at i:4621 original size:2 final size:2
Alignment explanation
Indices: 4614--4654 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
4604 GGGTTTTAAG
4614 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
4655 TAAGGATAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:4964 original size:20 final size:19
Alignment explanation
Indices: 4930--4968 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
4920 TTAAAAAATA
*
4930 ATTTTATATATAAATATAT
1 ATTTTATAAATAAATATAT
4949 ATTTTAATAAATAAATATAT
1 ATTTT-ATAAATAAATATAT
4969 TAAAAATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
ATTTTATAAATAAATATAT
Found at i:4968 original size:18 final size:17
Alignment explanation
Indices: 4899--5019 Score: 61
Period size: 16 Copynumber: 7.7 Consensus size: 17
4889 TCAATATATA
4899 ATATTATAAT-AATAA-
1 ATATTATAATAAATAAT
* *
4914 ATTATTTTAAAAAATAAT
1 A-TATTATAATAAATAAT
4932 -T-TTATATATAAAT-AT
1 ATATTATA-ATAAATAAT
*
4947 ATATTTTAATAAATAAAT
1 ATATTATAATAAAT-AAT
*
4965 ATATTA-AA-AATTAA-
1 ATATTATAATAAATAAT
*
4979 ATATTATAAGAAA-AAT
1 ATATTATAATAAATAAT
* *
4995 TTACT-TAA-AAATAAT
1 ATATTATAATAAATAAT
5010 A-ATT-TAATAA
1 ATATTATAATAA
5020 TTTACTTTTT
Statistics
Matches: 81, Mismatches: 12, Indels: 26
0.68 0.10 0.22
Matches are distributed among these distances:
14 14 0.17
15 21 0.26
16 28 0.35
17 11 0.14
18 7 0.09
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.41
Consensus pattern (17 bp):
ATATTATAATAAATAAT
Found at i:4983 original size:32 final size:32
Alignment explanation
Indices: 4898--4992 Score: 86
Period size: 32 Copynumber: 2.9 Consensus size: 32
4888 ATCAATATAT
*
4898 AATAT-TATAATAATAAATTATTTTAAAAAATA
1 AATATATATAAAAATAAA-TATTTTAAAAAATA
* * * * *
4930 ATTTTATATATAAATATATATTTTAATAAATA
1 AATATATATAAAAATAAATATTTTAAAAAATA
*
4962 AATATAT-TAAAAATTAAATATTATAAGAAAA
1 AATATATATAAAAA-TAAATATTTTAA-AAAA
4993 ATTTACTTAA
Statistics
Matches: 48, Mismatches: 12, Indels: 5
0.74 0.18 0.08
Matches are distributed among these distances:
31 5 0.10
32 31 0.65
33 12 0.25
ACGTcount: A:0.58, C:0.00, G:0.01, T:0.41
Consensus pattern (32 bp):
AATATATATAAAAATAAATATTTTAAAAAATA
Found at i:4986 original size:49 final size:51
Alignment explanation
Indices: 4880--4986 Score: 123
Period size: 48 Copynumber: 2.1 Consensus size: 51
4870 ACATGTCAAT
* *
4880 TATTAAATATCAATATATAATATTATAATAATAAATTATTTTAAAAAATAA
1 TATTATATATCAATATATAATATTATAATAATAAATTATATTAAAAAATAA
* * *
4931 TTTTATATAT-AA-ATAT-ATATTTTAATAAATAAA-TATATTAAAAATTAAA
1 TATTATATATCAATATATAATATTATAAT-AATAAATTATATTAAAAAAT-AA
4980 TATTATA
1 TATTATA
4987 AGAAAAATTT
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
48 20 0.42
49 18 0.38
50 2 0.04
51 8 0.17
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.44
Consensus pattern (51 bp):
TATTATATATCAATATATAATATTATAATAATAAATTATATTAAAAAATAA
Found at i:5216 original size:16 final size:16
Alignment explanation
Indices: 5197--5263 Score: 71
Period size: 16 Copynumber: 4.2 Consensus size: 16
5187 GAACCTAAAA
5197 AGGCTTAAACCCGAAT
1 AGGCTTAAACCCGAAT
* *
5213 AGGCCTGAACCCGAAT
1 AGGCTTAAACCCGAAT
* ** *
5229 AAGCTCGAACTCGAAT
1 AGGCTTAAACCCGAAT
*
5245 AGGCTTAAACTCGAAT
1 AGGCTTAAACCCGAAT
5261 AGG
1 AGG
5264 TCAGAACCCG
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
16 42 1.00
ACGTcount: A:0.36, C:0.24, G:0.22, T:0.18
Consensus pattern (16 bp):
AGGCTTAAACCCGAAT
Found at i:5275 original size:16 final size:16
Alignment explanation
Indices: 5204--5275 Score: 58
Period size: 16 Copynumber: 4.5 Consensus size: 16
5194 AAAAGGCTTA
* *
5204 AACCCGAATAGGCCTG
1 AACCCGAATAGGTCAG
*
5220 AACCCGAATAAGCTC-G
1 AACCCGAAT-AGGTCAG
* *
5236 AACTCGAATAGGCTTA-
1 AACCCGAATAGG-TCAG
*
5252 AACTCGAATAGGTCAG
1 AACCCGAATAGGTCAG
5268 AACCCGAA
1 AACCCGAA
5276 ATAATTCGAA
Statistics
Matches: 45, Mismatches: 7, Indels: 8
0.75 0.12 0.13
Matches are distributed among these distances:
15 4 0.09
16 38 0.84
17 3 0.07
ACGTcount: A:0.38, C:0.26, G:0.21, T:0.15
Consensus pattern (16 bp):
AACCCGAATAGGTCAG
Found at i:6191 original size:17 final size:17
Alignment explanation
Indices: 6169--6204 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
6159 ACTAAGTTCA
6169 CATTTTCAACAACTAAT
1 CATTTTCAACAACTAAT
*
6186 CATTTTCAATAACTAAT
1 CATTTTCAACAACTAAT
6203 CA
1 CA
6205 ATCTCCATAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.42, C:0.22, G:0.00, T:0.36
Consensus pattern (17 bp):
CATTTTCAACAACTAAT
Found at i:11294 original size:2 final size:2
Alignment explanation
Indices: 11287--11333 Score: 50
Period size: 2 Copynumber: 26.0 Consensus size: 2
11277 CATTGTTCTG
*
11287 TA TA TA TA TA TA TA TA TA TA -A AA TA TA -A TA TA -A TA TA -A
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
11325 TA TA -A TA TA
1 TA TA TA TA TA
11334 AATTTTTGTT
Statistics
Matches: 39, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
1 5 0.13
2 34 0.87
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (2 bp):
TA
Found at i:11302 original size:10 final size:10
Alignment explanation
Indices: 11287--11333 Score: 50
Period size: 9 Copynumber: 5.2 Consensus size: 10
11277 CATTGTTCTG
11287 TATATATATA
1 TATATATATA
11297 TATATATATA
1 TATATATATA
*
11307 -AAATATA-A
1 TATATATATA
11315 TATA-ATATA
1 TATATATATA
11324 -ATATA-ATA
1 TATATATATA
11332 TA
1 TA
11334 AATTTTTGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
8 10 0.32
9 11 0.35
10 10 0.32
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (10 bp):
TATATATATA
Found at i:11318 original size:5 final size:5
Alignment explanation
Indices: 11287--11334 Score: 60
Period size: 5 Copynumber: 9.0 Consensus size: 5
11277 CATTGTTCTG
*
11287 TATATA TATATA TATATA TAAAA TATAA TATAA TATAA TATAA TATAA
1 TATA-A TATA-A TATA-A TATAA TATAA TATAA TATAA TATAA TATAA
11335 ATTTTTGTTA
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
5 25 0.62
6 15 0.38
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
TATAA
Found at i:13524 original size:2 final size:2
Alignment explanation
Indices: 13517--13544 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
13507 GATCGTGTTC
13517 AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG
13545 CTATAATTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:16985 original size:16 final size:16
Alignment explanation
Indices: 16964--16994 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
16954 TTTTACCCAG
16964 ATGTATCGATACATTA
1 ATGTATCGATACATTA
16980 ATGTATCGATACATT
1 ATGTATCGATACATT
16995 CTGTCTTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.39
Consensus pattern (16 bp):
ATGTATCGATACATTA
Found at i:17040 original size:20 final size:20
Alignment explanation
Indices: 17013--17064 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
17003 TACCCAGATA
* *
17013 TATCGATACATTTTTTAATG
1 TATCGATACATTTATGAATG
* *
17033 TGTCGATACATGTATGAATG
1 TATCGATACATTTATGAATG
17053 TATCGATACATT
1 TATCGATACATT
17065 CTGTCTTTTT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.31, C:0.12, G:0.15, T:0.42
Consensus pattern (20 bp):
TATCGATACATTTATGAATG
Found at i:17063 original size:70 final size:71
Alignment explanation
Indices: 16964--17114 Score: 233
Period size: 71 Copynumber: 2.2 Consensus size: 71
16954 TTTTACCCAG
16964 ATGTATCGATACA--T-T-AATGTATCGATACATTCTGTC-TTTTACCCAGATATATCGATACAT
1 ATGTATCGATACATGTATGAATGTATCGATACATTCTGTCTTTTTACCCAGATATATCGATAC-T
17024 TTTTT-A
65 TTTTTCA
* *
17030 ATGTGTCGATACATGTATGAATGTATCGATACATTCTGTCTTTTTACCCAGATGTATCGATACTT
1 ATGTATCGATACATGTATGAATGTATCGATACATTCTGTCTTTTTACCCAGATATATCGATACTT
17095 TTTTCA
66 TTTTCA
17101 ATGTATCGATACAT
1 ATGTATCGATACAT
17115 CTAGTTAAAA
Statistics
Matches: 76, Mismatches: 3, Indels: 7
0.88 0.03 0.08
Matches are distributed among these distances:
66 12 0.16
68 1 0.01
69 1 0.01
70 27 0.36
71 35 0.46
ACGTcount: A:0.28, C:0.17, G:0.13, T:0.42
Consensus pattern (71 bp):
ATGTATCGATACATGTATGAATGTATCGATACATTCTGTCTTTTTACCCAGATATATCGATACTT
TTTTCA
Found at i:18395 original size:20 final size:22
Alignment explanation
Indices: 18355--18395 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
18345 TAGCCTTTGA
*
18355 CCATGCATTTTTTTACTATGTT
1 CCATGCATTTTTTAACTATGTT
18377 CCATGCA-TTTTTAAC-ATGT
1 CCATGCATTTTTTAACTATGT
18396 CTAGCATCTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 7 0.39
22 7 0.39
ACGTcount: A:0.22, C:0.20, G:0.10, T:0.49
Consensus pattern (22 bp):
CCATGCATTTTTTAACTATGTT
Found at i:18464 original size:382 final size:382
Alignment explanation
Indices: 17758--18513 Score: 1296
Period size: 382 Copynumber: 2.0 Consensus size: 382
17748 CCAACAAATT
17758 GGATTTCCATATCATTGGTATATTTTCTAATCTTTTCACTTTCACTTGCTGTTTTTGTTATACTC
1 GGATTTCCATATCATTGGTATATTTTCTAATCTTTTCACTTTCACTTGCTGTTTTTGTTATACTC
17823 ATCATTCTAATGAGCTTATCATGCTTCCATGACCCTTTTAAGAACATCATGCATTATAATGGCCT
66 ATCATTCTAATGAGCTTATCATGCTTCCATGACCCTTTTAAGAACATCATGCATTATAATGGCCT
17888 TAAATGTGGTAGTTTTAGGATTGTCTTGATGTTTTGATGCCATCTTTTGCAACTAAAATGCCATG
131 TAAATGTGGTAGTTTTAGGATTGTCTTGATGTTTTGATGCCATCTTTTGCAACTAAAATGCCATG
* * *
17953 TTCATCCTAGTAGCCTTTGACCATGCATTTTTTTACTGTGTTCCATGCATTTTTAACATTTTTAG
196 TTCATCCTAGTAGCCTTTGACCATGCATTTTTTTACTATGTTCCATGCATTTTTAACATGTCTAG
* ** * * *
18018 CATCTCATTGAATCTTATCTGTCAGTTCATTATATGATTATCACATTTTCCATGTCAAGATGCAT
261 CATCTCATTAAATCTTATCCATCAATTCATTATATGATCATCACATTTTCCATATCAAGATGCAT
* *
18083 GCTTATTTGCATTTGAAAATCGATTTTCCAAAACATCTCCCAAGTTAAAAACAGATC
326 GCTTATTTGCATTTGAAAATCAATTTTCCAAAACATCCCCCAAGTTAAAAACAGATC
* * * *
18140 GGATTTCCATCTCGTTGGTATATTTTTTAATCTTTTCACTTTCACTTGCTGTTTTTGTTATTCTC
1 GGATTTCCATATCATTGGTATATTTTCTAATCTTTTCACTTTCACTTGCTGTTTTTGTTATACTC
* **
18205 ATCATTCTAGTGAGCTTATCATGCTTCCATGACCCTTTTAAGAACATCATGCATTATTGTGGCCT
66 ATCATTCTAATGAGCTTATCATGCTTCCATGACCCTTTTAAGAACATCATGCATTATAATGGCCT
**
18270 TGGATGTGGTAGTTTTAGGATTGTCTTGATGTTTTGATGCCATCTTTTGCAACTAAAATGCCATG
131 TAAATGTGGTAGTTTTAGGATTGTCTTGATGTTTTGATGCCATCTTTTGCAACTAAAATGCCATG
18335 TTCATCCTAGTAGCCTTTGACCATGCATTTTTTTACTATGTTCCATGCATTTTTAACATGTCTAG
196 TTCATCCTAGTAGCCTTTGACCATGCATTTTTTTACTATGTTCCATGCATTTTTAACATGTCTAG
* *
18400 CATCTCATTAAATGTTATCCATCAATTCATTATATGATCATCACATTTTTCATATCAAGATGCAT
261 CATCTCATTAAATCTTATCCATCAATTCATTATATGATCATCACATTTTCCATATCAAGATGCAT
* *
18465 GCTTGTTTGCGTTTGAAAATCAATTTTCCAAAACATCCCCCAAGTTAAA
326 GCTTATTTGCATTTGAAAATCAATTTTCCAAAACATCCCCCAAGTTAAA
18514 CATGTTAGCC
Statistics
Matches: 350, Mismatches: 24, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
382 350 1.00
ACGTcount: A:0.25, C:0.19, G:0.13, T:0.42
Consensus pattern (382 bp):
GGATTTCCATATCATTGGTATATTTTCTAATCTTTTCACTTTCACTTGCTGTTTTTGTTATACTC
ATCATTCTAATGAGCTTATCATGCTTCCATGACCCTTTTAAGAACATCATGCATTATAATGGCCT
TAAATGTGGTAGTTTTAGGATTGTCTTGATGTTTTGATGCCATCTTTTGCAACTAAAATGCCATG
TTCATCCTAGTAGCCTTTGACCATGCATTTTTTTACTATGTTCCATGCATTTTTAACATGTCTAG
CATCTCATTAAATCTTATCCATCAATTCATTATATGATCATCACATTTTCCATATCAAGATGCAT
GCTTATTTGCATTTGAAAATCAATTTTCCAAAACATCCCCCAAGTTAAAAACAGATC
Found at i:24840 original size:12 final size:12
Alignment explanation
Indices: 24823--24866 Score: 52
Period size: 12 Copynumber: 3.4 Consensus size: 12
24813 TTACTTTTAG
24823 TTTTTTTTCTTT
1 TTTTTTTTCTTT
*
24835 TTTTTTTTGTTT
1 TTTTTTTTCTTT
24847 TTGTTTTTATCTTT
1 TT-TTTTT-TCTTT
24861 TCTTTT
1 T-TTTT
24867 GATTTTCCGA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
12 13 0.48
13 5 0.19
14 8 0.30
15 1 0.04
ACGTcount: A:0.02, C:0.07, G:0.05, T:0.86
Consensus pattern (12 bp):
TTTTTTTTCTTT
Found at i:25061 original size:7 final size:7
Alignment explanation
Indices: 25024--25059 Score: 54
Period size: 7 Copynumber: 4.9 Consensus size: 7
25014 ACTCCTACTC
25024 AAATAAAA
1 AAAT-AAA
25032 AAATAAA
1 AAATAAA
25039 AAATAAA
1 AAATAAA
25046 AAATAAA
1 AAATAAA
25053 GAAATAA
1 -AAATAA
25060 GATCACACAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
7 17 0.63
8 10 0.37
ACGTcount: A:0.83, C:0.00, G:0.03, T:0.14
Consensus pattern (7 bp):
AAATAAA
Found at i:25474 original size:2 final size:2
Alignment explanation
Indices: 25467--25513 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
25457 TATATTGATG
25467 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
25509 TA TA T
1 TA TA T
25514 TTAGCGTTTT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:27559 original size:21 final size:21
Alignment explanation
Indices: 27518--27561 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
27508 TTTGTTTCGG
* *
27518 TTTCGTTTTCTTCTTTTCTTT
1 TTTCGTTTTCTACTTTGCTTT
27539 TTTCG-TTTCTACTATTGCTTT
1 TTTCGTTTTCTACT-TTGCTTT
27560 TT
1 TT
27562 CTTCTTGCTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.05, C:0.18, G:0.07, T:0.70
Consensus pattern (21 bp):
TTTCGTTTTCTACTTTGCTTT
Found at i:27949 original size:33 final size:35
Alignment explanation
Indices: 27909--27992 Score: 113
Period size: 33 Copynumber: 2.5 Consensus size: 35
27899 TTGCAGCAGC
*
27909 TTCGATTGCATTCATTTGC-CT-TTGAATTGCTGT
1 TTCGATTGCATTCATTTGCTCTCTTGAACTGCTGT
*
27942 TTCGATTGCGTTCA-TT-CTCTCTTGAACTGCTGT
1 TTCGATTGCATTCATTTGCTCTCTTGAACTGCTGT
*
27975 TTCAATTGCATTCATTTG
1 TTCGATTGCATTCATTTG
27993 TAGCAGCAGT
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
31 1 0.02
32 4 0.09
33 36 0.84
34 2 0.05
ACGTcount: A:0.15, C:0.20, G:0.17, T:0.48
Consensus pattern (35 bp):
TTCGATTGCATTCATTTGCTCTCTTGAACTGCTGT
Found at i:29571 original size:79 final size:80
Alignment explanation
Indices: 29476--29629 Score: 208
Period size: 79 Copynumber: 1.9 Consensus size: 80
29466 TATATTTCCG
* * *
29476 ATGAGAAATTTAATATTTT-GGAGATAATA-ACGGGGTTGGAGTGTTCCCTC-GAAAATAACGGG
1 ATGAGAAATTCAATATTTTGGGA-ATAA-AGACGGGGTTGGAGTATCCCCTCAG-AAATAACGGG
29538 GTTGGAGTATCCCTAATT
63 GTTGGAGTATCCCTAATT
* *
29556 ATGAGAAA-TCAATATTTTGGGAATAAAGTCGGGGTTGGAGTATCCCCTCAGAAGTAACGGGGTT
1 ATGAGAAATTCAATATTTTGGGAATAAAGACGGGGTTGGAGTATCCCCTCAGAAATAACGGGGTT
29620 GGAGTATCCC
66 GGAGTATCCC
29630 CAATGAAAGA
Statistics
Matches: 66, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
78 1 0.02
79 53 0.80
80 12 0.18
ACGTcount: A:0.31, C:0.13, G:0.28, T:0.29
Consensus pattern (80 bp):
ATGAGAAATTCAATATTTTGGGAATAAAGACGGGGTTGGAGTATCCCCTCAGAAATAACGGGGTT
GGAGTATCCCTAATT
Found at i:29619 original size:28 final size:28
Alignment explanation
Indices: 29585--29656 Score: 94
Period size: 28 Copynumber: 2.6 Consensus size: 28
29575 GGAATAAAGT
*
29585 CGGGGTTGGAGTATCCCC--TCAGAAGTAA
1 CGGGGTTGGAGTATCCCCAATGA-AAG-AA
29613 CGGGGTTGGAGTATCCCCAATGAAAGAA
1 CGGGGTTGGAGTATCCCCAATGAAAGAA
*
29641 CGAGGTTGGAGTATCC
1 CGGGGTTGGAGTATCC
29657 TCGATTGTGA
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
28 35 0.88
29 3 0.08
30 2 0.05
ACGTcount: A:0.26, C:0.19, G:0.33, T:0.21
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCAATGAAAGAA
Found at i:31598 original size:14 final size:14
Alignment explanation
Indices: 31572--31609 Score: 51
Period size: 13 Copynumber: 2.7 Consensus size: 14
31562 TGGAATAGTG
*
31572 TTTTTCTTT-GTTT
1 TTTTTTTTTGGTTT
31585 TTTTTTTTTGGTTT
1 TTTTTTTTTGGTTT
31599 TTTCTTTTTTG
1 TTT-TTTTTTG
31610 CTAAAAGATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 8 0.36
14 7 0.32
15 7 0.32
ACGTcount: A:0.00, C:0.05, G:0.11, T:0.84
Consensus pattern (14 bp):
TTTTTTTTTGGTTT
Found at i:32158 original size:13 final size:13
Alignment explanation
Indices: 32140--32165 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32130 ACAAAGATCC
32140 ATGTATCGATACA
1 ATGTATCGATACA
32153 ATGTATCGATACA
1 ATGTATCGATACA
32166 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:32161 original size:33 final size:33
Alignment explanation
Indices: 32119--32185 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
32109 AAAATTTCCA
***
32119 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
32152 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
32185 A
1 A
32186 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:32229 original size:19 final size:18
Alignment explanation
Indices: 32205--32272 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
32195 CAGTAGCTAA
32205 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
32224 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
32239 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
32256 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
32273 TTGTTGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 4 0.09
19 25 0.58
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:32245 original size:13 final size:13
Alignment explanation
Indices: 32227--32251 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32217 ACAATACTTA
32227 TGTATCGATACAT
1 TGTATCGATACAT
32240 TGTATCGATACA
1 TGTATCGATACA
32252 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:32249 original size:32 final size:32
Alignment explanation
Indices: 32208--32270 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
32198 TAGCTAATTA
*
32208 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
32240 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
32271 AATTGTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:32334 original size:21 final size:21
Alignment explanation
Indices: 32308--32384 Score: 111
Period size: 21 Copynumber: 3.7 Consensus size: 21
32298 GTTGGGACCC
* *
32308 TGTATCGATACATTTGTA-GAA
1 TGTATCGATACA-TTCTACAAA
*
32329 TGTATCGATACATTCCACAAA
1 TGTATCGATACATTCTACAAA
32350 TGTATCGATACATTCTACAAA
1 TGTATCGATACATTCTACAAA
32371 TGTATCGATACATT
1 TGTATCGATACATT
32385 TGGAATTTTT
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
20 3 0.06
21 48 0.94
ACGTcount: A:0.35, C:0.17, G:0.13, T:0.35
Consensus pattern (21 bp):
TGTATCGATACATTCTACAAA
Found at i:32662 original size:42 final size:42
Alignment explanation
Indices: 32616--33585 Score: 252
Period size: 42 Copynumber: 23.0 Consensus size: 42
32606 GGTAGACAAA
*
32616 AGGTGAAAAAGTCTCCAAGGTCAAAGTCGACAGGCAGACTTG
1 AGGTGAAAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTG
** * **
32658 AGGTGAGGAAGTCTCCAGGGTCAAAATCGACAGGCAGAC-TG
1 AGGTGAAAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTG
* * *
32699 AGG-GTAAGAAAGTCTCCAGGGTCAAAGCCGACAAGCAGACTTT
1 AGGTG-AA-AAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTG
* *** * **
32742 AGATGAGGCAGTCTCC-AGAGTCAAAGCCGACAGACAGACTAA
1 AGGTGAAAAAGTCTCCAAG-GTCAAAGCCGACAGGCAGACTTG
* * * *
32784 AAGT-AGAAAAGTCTCCAAGGTTAAAACCGACAGGCAGACTTT
1 AGGTGA-AAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTG
* *** * *
32826 AGATGAGGCAGTCTCTAGGGTCAAAGCCGACAGGCAGAC-TG
1 AGGTGAAAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTG
* * ** * * * *
32867 AAAGTTG-GAAAGTCTTTAGGGTCAAAGCCGACAGGTAAACTTT
1 --AGGTGAAAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTG
* ** * * **
32910 AGATGAGGCAA-TCTCTAGGGTCAAAGCTAACAGGCAGA-TTG
1 AGGTGA-AAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTG
* * * * * * *
32951 AAAGT-AGGAAAGTCTGCACGGTCAAAACTGACAGGCAGACTTT
1 -AGGTGA-AAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTG
* * ** * * **
32994 AGATGAAGCAA-TCTTTAGGGTCAAAGCTGACAGGCAGACTAA
1 AGGTGAA-AAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTG
** * *
33036 AGG-GTAAGAAAGTCTCCAAGGTCAAAGTTGATAGGCAGACTTT
1 AGGTG-AA-AAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTG
** *** * *
33079 AAATGAGGCAGTCT-CAAGGGTCACAGTCGACAGGCAGAC-TG
1 AGGTGAAAAAGTCTCCAA-GGTCAAAGCCGACAGGCAGACTTG
* * * * * * * *
33120 AAAGT-AGGAAAGTTTCCAAGGTCAAAGTCGACAAGAAAACTTT
1 -AGGTGA-AAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTG
** *** ** * * **
33163 AAATGAGGTAGTCTATAAGGTCAAAGCCAACAGGTAGACTAA
1 AGGTGAAAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTG
* * *
33205 AGG-GTAAGAAAATCTCCAAAGTTAAAGCCGACAGGCAGACTTG
1 AGGTG-AA-AAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTG
* ** ** * *
33248 AGATGAGGCAA-TCTCCAAGGTCAAAGCTAATAAGCAGAC-TG
1 AGGTGA-AAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTG
* * ** * * * *
33289 AAAGT-AGGAAAGTCTAGAAGGTCAAAGCTGATAGGCAAACTTT
1 -AGGTGA-AAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTG
* * * * *
33332 AGAT-AAGGCAAGTCTCTAGGGTCAAAGCTGACAGGCAGAC-TG
1 AGGTGAA--AAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTG
* * *
33374 AAGG-GTAAGAAAGTCTCCAAGGTCAAAGCCGACAGACAGATTTT
1 -AGGTG-AA-AAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTG
* ** * * *
33418 AGAT-AAGGCAGTCTCTAGGGTCAAAGCCAAC-GAGCAGA-TTG
1 AGGTGAA-AAAGTCTCCAAGGTCAAAGCCGACAG-GCAGACTTG
* * ** * *
33459 AAAGT-AGAGAAGTCTCC-AGAGTCAAAGTAGACAAGCAGACTTT
1 -AGGTGA-AAAAGTCTCCAAG-GTCAAAGCCGACAGGCAGACTTG
* ** *
33502 AGAT-AAGGTAGTCTCCAAGGTCAAAGCTGACAGGCAGAC-TG
1 AGGTGAA-AAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTG
* * *
33543 AAGG-GTAAGAAAGTCTCCAGGGTTAAAGCCGACAGGCGGACTT
1 -AGGTG-AA-AAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTT
33586 AAAGTAAGAA
Statistics
Matches: 680, Mismatches: 195, Indels: 104
0.69 0.20 0.11
Matches are distributed among these distances:
40 1 0.00
41 40 0.06
42 460 0.68
43 172 0.25
44 7 0.01
ACGTcount: A:0.37, C:0.18, G:0.27, T:0.18
Consensus pattern (42 bp):
AGGTGAAAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTG
Found at i:32716 original size:84 final size:84
Alignment explanation
Indices: 32623--33585 Score: 803
Period size: 84 Copynumber: 11.4 Consensus size: 84
32613 AAAAGGTGAA
* * * * *
32623 AAAGTCTCCAAGGTCAAAGTCGACAGGCAGACTTGAGGTGAGGAAGTCTCCAGGGTCAAAATCGA
1 AAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTTAGATGAGGAAGTCTCTAGGGTCAAAAGCGA
**
32688 CAGGCAGACTGAGGGTAAG
66 CAGGCAGACTGAAAGTAAG
* * * * *
32707 AAAGTCTCCAGGGTCAAAGCCGACAAGCAGACTTTAGATGAGGCAGTCTCCAGAGTC-AAAGCCG
1 AAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTTAGATGAGGAAGTCTCTAGGGTCAAAAG-CG
* *
32771 ACAGACAGACTAAAAGT-AG
65 ACAGGCAGACTGAAAGTAAG
* * *
32790 AAAAGTCTCCAAGGTTAAAACCGACAGGCAGACTTTAGATGAGGCAGTCTCTAGGGTC-AAAGCC
1 -AAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTTAGATGAGGAAGTCTCTAGGGTCAAAAG-C
**
32854 GACAGGCAGACTGAAAGTTGG
64 GACAGGCAGACTGAAAGTAAG
** * * *
32875 AAAGTCTTTAGGGTCAAAGCCGACAGGTAAACTTTAGATGAGGCAA-TCTCTAGGGTC-AAAGCT
1 AAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTTAGATGAGG-AAGTCTCTAGGGTCAAAAGC-
* * *
32938 AACAGGCAGATTGAAAGTAGG
64 GACAGGCAGACTGAAAGTAAG
* * * * * *
32959 AAAGTCTGCACGGTCAAAACTGACAGGCAGACTTTAGATGAAGCAA-TCTTTAGGGTC-AAAGCT
1 AAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTTAGATG-AGGAAGTCTCTAGGGTCAAAAGC-
33022 GACAGGCAGACT-AAAGGGTAAG
64 GACAGGCAGACTGAAA--GTAAG
** * * * * *
33044 AAAGTCTCCAAGGTCAAAGTTGATAGGCAGACTTTAAATGAGGCAGTCTCAAGGGTC-ACAGTCG
1 AAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTTAGATGAGGAAGTCTCTAGGGTCAAAAG-CG
*
33108 ACAGGCAGACTGAAAGTAGG
65 ACAGGCAGACTGAAAGTAAG
* * * * * * * * * *
33128 AAAGTTTCCAAGGTCAAAGTCGACAAGAAAACTTTAAATGAGGTAGTCTATAAGGTC-AAAGCCA
1 AAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTTAGATGAGGAAGTCTCTAGGGTCAAAAG-CG
*
33192 ACAGGTAGACT-AAAGGGTAAG
65 ACAGGCAGACTGAAA--GTAAG
* * * * * *
33213 AAAATCTCCAAAGTTAAAGCCGACAGGCAGACTTGAGATGAGGCAA-TCTCCAAGGTC-AAAGCT
1 AAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTTAGATGAGG-AAGTCTCTAGGGTCAAAAGC-
* * * *
33276 AATAAGCAGACTGAAAGTAGG
64 GACAGGCAGACTGAAAGTAAG
** * * * *
33297 AAAGTCTAGAAGGTCAAAGCTGATAGGCAAACTTTAGATAAGGCAAGTCTCTAGGGTC-AAAGCT
1 AAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTTAGATGAGG-AAGTCTCTAGGGTCAAAAGC-
*
33361 GACAGGCAGACTGAAGGGTAAG
64 GACAGGCAGACTGAA-AGTAAG
* * * * *
33383 AAAGTCTCCAAGGTCAAAGCCGACAGACAGATTTTAGATAAGGCAGTCTCTAGGGTC-AAAGCCA
1 AAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTTAGATGAGGAAGTCTCTAGGGTCAAAAGCGA
*
33447 -ACGAGCAGATTGAAAGT-AG
66 CA-G-GCAGACTGAAAGTAAG
** * * * * *
33466 AGAAGTCTCC-AGAGTCAAAGTAGACAAGCAGACTTTAGATAAGGTAGTCTCCAAGGTC-AAAGC
1 A-AAGTCTCCAAG-GTCAAAGCCGACAGGCAGACTTTAGATGAGGAAGTCTCTAGGGTCAAAAGC
*
33529 TGACAGGCAGACTGAAGGGTAAG
64 -GACAGGCAGACTGAA-AGTAAG
* * *
33552 AAAGTCTCCAGGGTTAAAGCCGACAGGCGGACTT
1 AAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTT
33586 AAAGTAAGAA
Statistics
Matches: 719, Mismatches: 133, Indels: 53
0.79 0.15 0.06
Matches are distributed among these distances:
83 18 0.03
84 440 0.61
85 208 0.29
86 53 0.07
ACGTcount: A:0.37, C:0.18, G:0.27, T:0.18
Consensus pattern (84 bp):
AAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTTAGATGAGGAAGTCTCTAGGGTCAAAAGCGA
CAGGCAGACTGAAAGTAAG
Found at i:33128 original size:169 final size:168
Alignment explanation
Indices: 32623--33585 Score: 962
Period size: 169 Copynumber: 5.7 Consensus size: 168
32613 AAAAGGTGAA
* * * * * * *
32623 AAAGTCTCCAAGGTC-AAAGTCGACAGGCAGACTTGAGGTGAGGAAGTCTCCAGGGTCAAA-ATC
1 AAAGTCTCCAAGGTCAAAACT-GACAGGCAGACTTTAGATGAAGCAGTCTCTAGGGTCAAAGCT-
* * *
32686 GACAGGCAGACT-GAGGGTAAGAAAGTCTCCAGGGTCAAAGCCGACAAGCAGACTTTAGATGAGG
64 GACAGGCAGACTAAAGGGTAAGAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTTAGATGAGG
* * * * * *
32750 CAGTCTCCAGAGTCAAAGCCGACAGACAGACTAAAAGTAGA
129 CAGTCTCAAGGGTCAAAG-CAACAGGCAGACTGAAAGTAGG
* * * *
32791 AAAGTCTCCAAGGTTAAAACCGACAGGCAGACTTTAGATGAGGCAGTCTCTAGGGTCAAAGCCGA
1 AAAGTCTCCAAGGTCAAAACTGACAGGCAGACTTTAGATGAAGCAGTCTCTAGGGTCAAAGCTGA
** ** * * *
32856 CAGGCAGACTGAAA--GTTGGAAAGTCTTTAGGGTCAAAGCCGACAGGTAAACTTTAGATGAGGC
66 CAGGCAGACT-AAAGGGTAAGAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTTAGATGAGGC
* * *
32919 AATCTCTAGGGTCAAAGCTAACAGGCAGATTGAAAGTAGG
130 AGTCTCAAGGGTCAAAGC-AACAGGCAGACTGAAAGTAGG
* * * *
32959 AAAGTCTGCACGGTCAAAACTGACAGGCAGACTTTAGATGAAGCAATCTTTAGGGTCAAAGCTGA
1 AAAGTCTCCAAGGTCAAAACTGACAGGCAGACTTTAGATGAAGCAGTCTCTAGGGTCAAAGCTGA
** * *
33024 CAGGCAGACTAAAGGGTAAGAAAGTCTCCAAGGTCAAAGTTGATAGGCAGACTTTAAATGAGGCA
66 CAGGCAGACTAAAGGGTAAGAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTTAGATGAGGCA
* *
33089 GTCTCAAGGGTCACAGTCGACAGGCAGACTGAAAGTAGG
131 GTCTCAAGGGTCAAAG-CAACAGGCAGACTGAAAGTAGG
* * * * * * * * * * **
33128 AAAGTTTCCAAGGTC-AAAGTCGACAAGAAAACTTTAAATGAGGTAGTCTATAAGGTCAAAGCCA
1 AAAGTCTCCAAGGTCAAAACT-GACAGGCAGACTTTAGATGAAGCAGTCTCTAGGGTCAAAGCTG
* * * * *
33192 ACAGGTAGACTAAAGGGTAAGAAAATCTCCAAAGTTAAAGCCGACAGGCAGACTTGAGATGAGGC
65 ACAGGCAGACTAAAGGGTAAGAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTTAGATGAGGC
* * *
33257 AATCTCCAA-GGTCAAAGCTAATAAGCAGACTGAAAGTAGG
130 AGTCT-CAAGGGTCAAAGC-AACAGGCAGACTGAAAGTAGG
** * * *
33297 AAAGTCTAGAAGGTCAAAGCTGATAGGCAAACTTTAGAT-AAGGCAAGTCTCTAGGGTCAAAGCT
1 AAAGTCTCCAAGGTCAAAACTGACAGGCAGACTTTAGATGAA-GC-AGTCTCTAGGGTCAAAGCT
* * * *
33361 GACAGGCAGACTGAAGGGTAAGAAAGTCTCCAAGGTCAAAGCCGACAGACAGATTTTAGATAAGG
64 GACAGGCAGACTAAAGGGTAAGAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTTAGATGAGG
* *
33426 CAGTCTCTAGGGTCAAAGCCAAC-GAGCAGATTGAAAGTA-G
129 CAGTCTCAAGGGTCAAAG-CAACAG-GCAGACTGAAAGTAGG
* * * * *
33466 AGAAGTCTCC-AGAGTC-AAAGTAGACAAGCAGACTTTAGAT-AAGGTAGTCTCCAAGGTCAAAG
1 A-AAGTCTCCAAG-GTCAAAACT-GACAGGCAGACTTTAGATGAA-GCAGTCTCTAGGGTCAAAG
* * * *
33528 CTGACAGGCAGACTGAAGGGTAAGAAAGTCTCCAGGGTTAAAGCCGACAGGCGGACTT
62 CTGACAGGCAGACTAAAGGGTAAGAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTT
33586 AAAGTAAGAA
Statistics
Matches: 653, Mismatches: 122, Indels: 39
0.80 0.15 0.05
Matches are distributed among these distances:
167 4 0.01
168 206 0.32
169 307 0.47
170 135 0.21
171 1 0.00
ACGTcount: A:0.37, C:0.18, G:0.27, T:0.18
Consensus pattern (168 bp):
AAAGTCTCCAAGGTCAAAACTGACAGGCAGACTTTAGATGAAGCAGTCTCTAGGGTCAAAGCTGA
CAGGCAGACTAAAGGGTAAGAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTTAGATGAGGCA
GTCTCAAGGGTCAAAGCAACAGGCAGACTGAAAGTAGG
Found at i:42178 original size:15 final size:15
Alignment explanation
Indices: 42158--42195 Score: 76
Period size: 15 Copynumber: 2.5 Consensus size: 15
42148 TGAAAATGTG
42158 TATGAATGTCATGAA
1 TATGAATGTCATGAA
42173 TATGAATGTCATGAA
1 TATGAATGTCATGAA
42188 TATGAATG
1 TATGAATG
42196 CCATTAAGCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.39, C:0.05, G:0.21, T:0.34
Consensus pattern (15 bp):
TATGAATGTCATGAA
Found at i:47309 original size:20 final size:21
Alignment explanation
Indices: 47268--47310 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
47258 TATTGATTGT
47268 TTGTTGCTCGTGTTGCTTCGG
1 TTGTTGCTCGTGTTGCTTCGG
* *
47289 TTGTTGCT-GTTTTGTTTCGG
1 TTGTTGCTCGTGTTGCTTCGG
47309 TT
1 TT
47311 TCATTCTCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.00, C:0.14, G:0.30, T:0.56
Consensus pattern (21 bp):
TTGTTGCTCGTGTTGCTTCGG
Found at i:47745 original size:33 final size:32
Alignment explanation
Indices: 47706--47789 Score: 105
Period size: 33 Copynumber: 2.6 Consensus size: 32
47696 ATTGTAGCAG
* * *
47706 TTTCGATGGCATTCATTTACCTTTGAATTGCTA
1 TTTCGATTGCATTCATTT-CCCTTGAACTGCTA
*
47739 TTTCGATTGCATTCATTCTCCCTTGAACTGCTG
1 TTTCGATTGCATTCATT-TCCCTTGAACTGCTA
*
47772 TTTCAATTGCATTCATTT
1 TTTCGATTGCATTCATTT
47790 GCAGCAGTGT
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
32 1 0.02
33 43 0.96
34 1 0.02
ACGTcount: A:0.19, C:0.21, G:0.13, T:0.46
Consensus pattern (32 bp):
TTTCGATTGCATTCATTTCCCTTGAACTGCTA
Found at i:48110 original size:20 final size:20
Alignment explanation
Indices: 48085--48141 Score: 96
Period size: 20 Copynumber: 2.9 Consensus size: 20
48075 TTTCCATAAT
48085 TTGTATCGATACATTCTTCA
1 TTGTATCGATACATTCTTCA
48105 TTGTATCGATACATTCTTCA
1 TTGTATCGATACATTCTTCA
* *
48125 TTATATCTATACATTCT
1 TTGTATCGATACATTCT
48142 AGGTTTTACC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.26, C:0.19, G:0.07, T:0.47
Consensus pattern (20 bp):
TTGTATCGATACATTCTTCA
Found at i:50505 original size:28 final size:28
Alignment explanation
Indices: 50462--50533 Score: 108
Period size: 28 Copynumber: 2.6 Consensus size: 28
50452 CCACTATTGT
*
50462 GGATACTCCAACCCCGTTATTTCTGATG
1 GGATACTCCAACCCCGTTATTTCTGAGG
* * *
50490 GGATACTTCAATCCCGTTATTTTTGAGG
1 GGATACTCCAACCCCGTTATTTCTGAGG
50518 GGATACTCCAACCCCG
1 GGATACTCCAACCCCG
50534 GCTTTGTTTC
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.22, C:0.28, G:0.19, T:0.31
Consensus pattern (28 bp):
GGATACTCCAACCCCGTTATTTCTGAGG
Found at i:50651 original size:79 final size:79
Alignment explanation
Indices: 50488--50691 Score: 248
Period size: 79 Copynumber: 2.6 Consensus size: 79
50478 TTATTTCTGA
* * * * * *
50488 TGGGATACTTCAATCCCGTTATTTTTGAGGGGATACTCCAACCCCGGCTTTGTTTCTAAAATATC
1 TGGGATACTTCAACCCCATTATTTTTGAGGGGATACTCCAACCTCGGCTTTATTTCCAAAACATC
* *
50553 GATTTTTCATAATC
66 AATTTTTCACAATC
* * *
50567 GGGGATACTTCAACCCCCTTATTTTTGAGGGGATACTCCAACCTCGGTTTTATTTCCAAAACATC
1 TGGGATACTTCAACCCCATTATTTTTGAGGGGATACTCCAACCTCGGCTTTATTTCCAAAACATC
* *
50632 AATATTTT-ACCATT
66 AAT-TTTTCACAATC
* * *
50646 TGGGATACTCCAACCCCATTATTTCTAAGGGGATACTCCAACCTCG
1 TGGGATACTTCAACCCCATTATTTTTGAGGGGATACTCCAACCTCG
50692 TTATTTCTGA
Statistics
Matches: 107, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
79 103 0.96
80 4 0.04
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.34
Consensus pattern (79 bp):
TGGGATACTTCAACCCCATTATTTTTGAGGGGATACTCCAACCTCGGCTTTATTTCCAAAACATC
AATTTTTCACAATC
Found at i:50679 original size:28 final size:29
Alignment explanation
Indices: 50647--50717 Score: 101
Period size: 28 Copynumber: 2.5 Consensus size: 29
50637 TTTACCATTT
50647 GGGATACTCCAACCCCATTATTTCT-AAG
1 GGGATACTCCAACCCCATTATTTCTGAAG
* *
50675 GGGATACTCCAACCTCGTTATTTCTGAAG
1 GGGATACTCCAACCCCATTATTTCTGAAG
*
50704 AGG-TACTCCAACCC
1 GGGATACTCCAACCC
50718 TATTTTTATC
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
28 33 0.87
29 5 0.13
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.27
Consensus pattern (29 bp):
GGGATACTCCAACCCCATTATTTCTGAAG
Found at i:51691 original size:19 final size:19
Alignment explanation
Indices: 51645--51718 Score: 78
Period size: 20 Copynumber: 3.8 Consensus size: 19
51635 ACTGCCAGTT
*
51645 TCATGTATTGATACAATTG-
1 TCATGTATCGATACAA-TGA
*
51664 TGTATGTATCGATACAATGA
1 T-CATGTATCGATACAATGA
*
51684 TCATGTATCGATACAAAGCA
1 TCATGTATCGATACAATG-A
*
51704 TAATGTATCGATACA
1 TCATGTATCGATACA
51719 TCTGGATGTG
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
19 18 0.38
20 29 0.62
ACGTcount: A:0.36, C:0.14, G:0.16, T:0.34
Consensus pattern (19 bp):
TCATGTATCGATACAATGA
Found at i:51711 original size:20 final size:19
Alignment explanation
Indices: 51667--51718 Score: 77
Period size: 19 Copynumber: 2.7 Consensus size: 19
51657 ACAATTGTGT
* *
51667 ATGTATCGATACAATGATC
1 ATGTATCGATACAAAGATA
51686 ATGTATCGATACAAAGCATA
1 ATGTATCGATACAAAG-ATA
51706 ATGTATCGATACA
1 ATGTATCGATACA
51719 TCTGGATGTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 15 0.50
20 15 0.50
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.29
Consensus pattern (19 bp):
ATGTATCGATACAAAGATA
Found at i:56490 original size:15 final size:15
Alignment explanation
Indices: 56472--56503 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
56462 CGAGTCAACT
56472 TCATCATCATCATTA
1 TCATCATCATCATTA
*
56487 TCATCATCTTCATTA
1 TCATCATCATCATTA
56502 TC
1 TC
56504 TTTAATGGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.28, C:0.28, G:0.00, T:0.44
Consensus pattern (15 bp):
TCATCATCATCATTA
Found at i:58233 original size:19 final size:19
Alignment explanation
Indices: 58209--58278 Score: 88
Period size: 19 Copynumber: 3.7 Consensus size: 19
58199 ACAATTGTGT
*
58209 ATGTATCGAAACAAGGATC
1 ATGTATCGATACAAGGATC
*
58228 ATGTATCGATACAATGATC
1 ATGTATCGATACAAGGATC
* *
58247 -TGTATCGATACAAAGCATA
1 ATGTATCGATAC-AAGGATC
58266 ATGTATCGATACA
1 ATGTATCGATACA
58279 TCTAGATGTG
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
18 11 0.25
19 22 0.50
20 11 0.25
ACGTcount: A:0.40, C:0.16, G:0.17, T:0.27
Consensus pattern (19 bp):
ATGTATCGATACAAGGATC
Found at i:59864 original size:23 final size:23
Alignment explanation
Indices: 59838--59927 Score: 74
Period size: 23 Copynumber: 3.7 Consensus size: 23
59828 GAAAGAAAAC
*
59838 ATGCATGAAATGTAACGTATGAA
1 ATGCATGAAATGTAAAGTATGAA
* *
59861 ATGCATGAAATGAAAATTATGTGAA
1 ATGCATGAAATGTAAAGTA--TGAA
*
59886 CTGCATGCATGAAATGTAATGTATGAA
1 ----ATGCATGAAATGTAAAGTATGAA
*
59913 TTGCATGAAA-GTAAA
1 ATGCATGAAATGTAAA
59928 AGAATGCAAT
Statistics
Matches: 53, Mismatches: 8, Indels: 13
0.72 0.11 0.18
Matches are distributed among these distances:
22 4 0.08
23 25 0.47
25 4 0.08
27 4 0.08
29 16 0.30
ACGTcount: A:0.43, C:0.08, G:0.21, T:0.28
Consensus pattern (23 bp):
ATGCATGAAATGTAAAGTATGAA
Found at i:60167 original size:11 final size:11
Alignment explanation
Indices: 60153--60201 Score: 53
Period size: 11 Copynumber: 4.2 Consensus size: 11
60143 AATTAATTAA
*
60153 TTATTACTATT
1 TTATTATTATT
60164 TTATTATTATTAT
1 TTATTATTA-T-T
*
60177 ATTATTAATATT
1 -TTATTATTATT
60189 TTATTATTATT
1 TTATTATTATT
60200 TT
1 TT
60202 TTTGTTTTTG
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
11 20 0.62
12 2 0.06
13 2 0.06
14 8 0.25
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (11 bp):
TTATTATTATT
Found at i:60180 original size:25 final size:24
Alignment explanation
Indices: 60148--60199 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 24
60138 TTGTTAATTA
*
60148 ATTAATTATTACTATTTTATTATT
1 ATTAATTATTAATATTTTATTATT
60172 ATTATATTATTAATATTTTATTATT
1 ATTA-ATTATTAATATTTTATTATT
60197 ATT
1 ATT
60200 TTTTTGTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
24 4 0.15
25 22 0.85
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (24 bp):
ATTAATTATTAATATTTTATTATT
Found at i:60204 original size:14 final size:14
Alignment explanation
Indices: 60152--60203 Score: 58
Period size: 14 Copynumber: 4.0 Consensus size: 14
60142 TAATTAATTA
*
60152 ATTATTACTATTTT
1 ATTATTATTATTTT
60166 ATTATTATTA---T
1 ATTATTATTATTTT
*
60177 ATTATTAATATTTT
1 ATTATTATTATTTT
60191 ATTATTATT-TTTT
1 ATTATTATTATTTT
60204 TGTTTTTGTT
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
11 10 0.31
13 4 0.12
14 18 0.56
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (14 bp):
ATTATTATTATTTT
Found at i:61845 original size:62 final size:63
Alignment explanation
Indices: 61747--61875 Score: 181
Period size: 62 Copynumber: 2.1 Consensus size: 63
61737 ATACATTATT
* * * * *
61747 CATTGTATCAATACATTCTGAGTTTTACCCAGATGTATCGATACATTATTT-ATTGTATCGATA
1 CATTGCATCAATACATTCCGAGATTTACCCAGATGTATCAATACATT-TTTCAATGTATCGATA
*
61810 CATTGCATCGATACATTCCG-GATTTACCCAGATGTATCAATACATTTTTCAATGTATCGATA
1 CATTGCATCAATACATTCCGAGATTTACCCAGATGTATCAATACATTTTTCAATGTATCGATA
61872 CATT
1 CATT
61876 CAGGCATTTT
Statistics
Matches: 59, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
61 3 0.05
62 39 0.66
63 17 0.29
ACGTcount: A:0.30, C:0.19, G:0.12, T:0.39
Consensus pattern (63 bp):
CATTGCATCAATACATTCCGAGATTTACCCAGATGTATCAATACATTTTTCAATGTATCGATA
Found at i:64367 original size:79 final size:78
Alignment explanation
Indices: 64158--64376 Score: 255
Period size: 79 Copynumber: 2.8 Consensus size: 78
64148 TCATCTCGGA
* * * *
64158 GATACTCCAACCCCGGTTTTATTTCCAAACATCAATTTT-TATAATCGGGGATACTCCAACCCCA
1 GATACTCCAACCCCGGCTTTATTTCTAAACATCGATTTTCCATAATCGGGGATACTCCAACCCCA
*
64222 TTATTTTCGAGGG
66 TTATTTTCGAGAG
* * *
64235 GATACTCCAACCCCGGCTTTATTTATAAA-ATACTGA-TTTCTCACAATCAGGGATACTCCAACC
1 GATACTCCAACCCCGGCTTTATTTCTAAACAT-C-GATTTTC-CATAATCGGGGATACTCCAACC
*
64298 CCATTATTTTCGCGAG
63 CCATTATTTTCGAGAG
* * * * *
64314 GATACTCCAACCCTGACCTTATTTCTAAAGCATCGATTTTCCATAATCGGGGATGCTCTAACC
1 GATACTCCAACCCCGGCTTTATTTCTAAA-CATCGATTTTCCATAATCGGGGATACTCCAACC
64377 TCGGTTTTAT
Statistics
Matches: 118, Mismatches: 17, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
76 2 0.02
77 30 0.25
78 1 0.01
79 78 0.66
80 5 0.04
81 2 0.02
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.31
Consensus pattern (78 bp):
GATACTCCAACCCCGGCTTTATTTCTAAACATCGATTTTCCATAATCGGGGATACTCCAACCCCA
TTATTTTCGAGAG
Found at i:64394 original size:130 final size:130
Alignment explanation
Indices: 64232--64507 Score: 428
Period size: 130 Copynumber: 2.1 Consensus size: 130
64222 TTATTTTCGA
64232 GGGGATACTCCAACCCCGGCTTTATTTATAAAATACTGATTTCTCACAATCAGGGATACTCCAAC
1 GGGGATACTCCAACCCCGGCTTTATTTATAAAATACTGATTTCTCACAATCAGGGATACTCCAAC
* *
64297 CCCATTATTTTCGC-GAGGATACTCCAACCCTGACCTTATTTCTAAAGCATCGATTTTCCATAAT
66 CCCATTATTTTCGCAG-GGATACTCCAACCCCGACCTTATTTCTAAAGCATCGATTTTCCACAAT
64361 C
130 C
* * * * * * *
64362 GGGGATGCTCTAACCTCGGTTTTATTTCTAAAATATTGATTTCTCACAATCGGGGATACTCCAAC
1 GGGGATACTCCAACCCCGGCTTTATTTATAAAATACTGATTTCTCACAATCAGGGATACTCCAAC
* *
64427 CCCATTATTTTCGCAGGGATACTCCAACCCCGGCCTTATTTCTGAAGCATCGATTTTCCACAATC
66 CCCATTATTTTCGCAGGGATACTCCAACCCCGACCTTATTTCTAAAGCATCGATTTTCCACAATC
*
64492 AGGGATACTCCAACCC
1 GGGGATACTCCAACCC
64508 TGTTATTTTC
Statistics
Matches: 130, Mismatches: 15, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
130 129 0.99
131 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.30
Consensus pattern (130 bp):
GGGGATACTCCAACCCCGGCTTTATTTATAAAATACTGATTTCTCACAATCAGGGATACTCCAAC
CCCATTATTTTCGCAGGGATACTCCAACCCCGACCTTATTTCTAAAGCATCGATTTTCCACAATC
Found at i:64560 original size:209 final size:209
Alignment explanation
Indices: 64158--64585 Score: 564
Period size: 209 Copynumber: 2.1 Consensus size: 209
64148 TCATCTCGGA
* * * ** * *
64158 GATACTCCAACCCCGGTTTTATTTC-CAAACATCAATTT-TTATAATCGGGGATACTCCAACCCC
1 GATACTCCAACCTCGGTTTTATTTCTAAAATATTGATTTCTCACAATCGGGGATACTCCAACCCC
*
64221 ATTATTTTCGAGGGGATACTCCAACCCCGGCTTTATTTATAAAATACTGATTTCTCACAATCAGG
66 ATTATTTTCGAGGGGATACTCCAACCCCGGCCTTATTTATAAAATACTGATTTCTCACAATCAGG
* * *
64286 GATACTCCAACCCCATTATTTTCGCGAGGATACTCCAACCCTGACCTTATTTCTAAAGCATCGAT
131 GATACTCCAACCCCATTATTTTCGAGAGGATACTCCAACCCCGACCTTATTTCTAAAACATCGAT
*
64351 TTTCCATAATCGGG
196 TTTCCATAATCAGG
* *
64365 GATGCTCTAACCTCGGTTTTATTTCTAAAATATTGATTTCTCACAATCGGGGATACTCCAACCCC
1 GATACTCCAACCTCGGTTTTATTTCTAAAATATTGATTTCTCACAATCGGGGATACTCCAACCCC
* *
64430 ATTATTTTCGCA-GGGATACTCCAACCCCGGCCTTATTTCTGAAGCAT-C-GATTT-TCCACAAT
66 ATTATTTTCG-AGGGGATACTCCAACCCCGGCCTTATTTAT-AA-AATACTGATTTCT-CACAAT
** * **
64491 CAGGGATACTCCAACCCTGTTATTTTCGAGGGGATACTCCAACCCCGATTTTATTT-TCAAAACA
127 CAGGGATACTCCAACCCCATTATTTTCGAGAGGATACTCCAACCCCGACCTTATTTCT-AAAACA
*
64555 TCGATTTTCTATAATCAGG
191 TCGATTTTCCATAATCAGG
64574 GATACTCCAACC
1 GATACTCCAACC
64586 CTGTTATTTC
Statistics
Matches: 190, Mismatches: 24, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
207 22 0.12
208 11 0.06
209 151 0.79
210 4 0.02
211 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.14, T:0.32
Consensus pattern (209 bp):
GATACTCCAACCTCGGTTTTATTTCTAAAATATTGATTTCTCACAATCGGGGATACTCCAACCCC
ATTATTTTCGAGGGGATACTCCAACCCCGGCCTTATTTATAAAATACTGATTTCTCACAATCAGG
GATACTCCAACCCCATTATTTTCGAGAGGATACTCCAACCCCGACCTTATTTCTAAAACATCGAT
TTTCCATAATCAGG
Found at i:64620 original size:79 final size:79
Alignment explanation
Indices: 64362--64641 Score: 294
Period size: 79 Copynumber: 3.5 Consensus size: 79
64352 TTCCATAATC
* * * * * * * *
64362 GGGGATGCTCTAACCTCGGTTTTATTTCTAAAATATTGA-TTTCTCACAATCGGGGATACTCCAA
1 GGGGATACTCCAACCCCGATTTTATTTCCAAAACATCGATTTTC-CACAATCAGGGATACTCCAA
** *
64426 CCCCATTATTTTCGCA
65 CCCTGTTATTTCCG-A
*** ** *
64442 -GGGATACTCCAACCCCGGCCTTATTTCTGAAGCATCGATTTTCCACAATCAGGGATACTCCAAC
1 GGGGATACTCCAACCCCGATTTTATTTCCAAAACATCGATTTTCCACAATCAGGGATACTCCAAC
*
64506 CCTGTTATTTTCGA
66 CCTGTTATTTCCGA
* * *
64520 GGGGATACTCCAACCCCGATTTTATTTTCAAAACATCGATTTTCTATAATCAGGGATACTCCAAC
1 GGGGATACTCCAACCCCGATTTTATTTCCAAAACATCGATTTTCCACAATCAGGGATACTCCAAC
64585 CCTGTTATTTCCGA
66 CCTGTTATTTCCGA
*** * *
64599 GGGGATACTCCAACTTTGATTTTATTTCCAGAACACCGATTTT
1 GGGGATACTCCAACCCCGATTTTATTTCCAAAACATCGATTTT
64642 TCATAATGGA
Statistics
Matches: 170, Mismatches: 28, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
78 1 0.01
79 165 0.97
80 4 0.02
ACGTcount: A:0.26, C:0.25, G:0.16, T:0.33
Consensus pattern (79 bp):
GGGGATACTCCAACCCCGATTTTATTTCCAAAACATCGATTTTCCACAATCAGGGATACTCCAAC
CCTGTTATTTCCGA
Found at i:66800 original size:21 final size:22
Alignment explanation
Indices: 66770--66816 Score: 87
Period size: 21 Copynumber: 2.2 Consensus size: 22
66760 TTTGTTTTGT
66770 TTTTTGTACAATCACTAATTCA
1 TTTTTGTACAATCACTAATTCA
66792 TTTTT-TACAATCACTAATTCA
1 TTTTTGTACAATCACTAATTCA
66813 TTTT
1 TTTT
66817 CCTTTTTGCT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 20 0.80
22 5 0.20
ACGTcount: A:0.30, C:0.17, G:0.02, T:0.51
Consensus pattern (22 bp):
TTTTTGTACAATCACTAATTCA
Found at i:72786 original size:13 final size:13
Alignment explanation
Indices: 72768--72792 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
72758 CAAAGATCAG
72768 TGTATCGATACAA
1 TGTATCGATACAA
72781 TGTATCGATACA
1 TGTATCGATACA
72793 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:72860 original size:19 final size:19
Alignment explanation
Indices: 72836--72885 Score: 91
Period size: 19 Copynumber: 2.6 Consensus size: 19
72826 TAGCTTACAT
72836 TGTATCGATACAAAACTTA
1 TGTATCGATACAAAACTTA
*
72855 TGTATCGATACAACACTTA
1 TGTATCGATACAAAACTTA
72874 TGTATCGATACA
1 TGTATCGATACA
72886 TTGTATCGAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.38, C:0.18, G:0.12, T:0.32
Consensus pattern (19 bp):
TGTATCGATACAAAACTTA
Found at i:73680 original size:120 final size:120
Alignment explanation
Indices: 73499--73753 Score: 338
Period size: 120 Copynumber: 2.1 Consensus size: 120
73489 TGTCACACTA
* *
73499 GACTTAAAGATGATGAGGATGAAGAGTGATAAAAGGACCAATACGTTGATTCACGGCCAACGATA
1 GACTTAAAGATGAAGAGGATGAAAAGTGATAAAAGGACCAATACGTTGATTCACGGCCAACGATA
*
73564 TTGGGTTTTAAAGATGATG-AGGATGCCAATATGCTGATTCAAGGCCAGCAATATTG
66 TTGGG-TTTAAAGATGA-GAAGGATGCCAATATGCTGATTCAAGGCCAGCAACATTG
* *
73620 GACTTAAAGATGAAG-GTGA-GAAAAGTGATAAAGATG-CCAATATGTTGATTCACGGCCAACGA
1 GACTTAAAGATGAAGAG-GATGAAAAGTGATAAA-AGGACCAATACGTTGATTCACGGCCAACGA
* * *
73682 TATTGGGTTTAAAGATGAGAAAAAGGATGTCAATGTGCTGATTCAAGGCCAGCTACATTG
64 TATTGGGTTTAAAGATGAG---AAGGATGCCAATATGCTGATTCAAGGCCAGCAACATTG
*
73742 AACTTAAAGATG
1 GACTTAAAGATG
73754 GAACAGGTGC
Statistics
Matches: 119, Mismatches: 9, Indels: 11
0.86 0.06 0.08
Matches are distributed among these distances:
118 1 0.01
119 11 0.09
120 45 0.38
121 18 0.15
122 44 0.37
ACGTcount: A:0.37, C:0.13, G:0.26, T:0.25
Consensus pattern (120 bp):
GACTTAAAGATGAAGAGGATGAAAAGTGATAAAAGGACCAATACGTTGATTCACGGCCAACGATA
TTGGGTTTAAAGATGAGAAGGATGCCAATATGCTGATTCAAGGCCAGCAACATTG
Found at i:73803 original size:22 final size:22
Alignment explanation
Indices: 73778--73845 Score: 54
Period size: 22 Copynumber: 3.1 Consensus size: 22
73768 ATGCTGATTC
73778 AAGGCCAGCTATATTGGACTTA
1 AAGGCCAGCTATATTGGACTTA
* * *
73800 AAGG--TGCCA-ATGTGCTGA-TTC
1 AAGGCCAGCTATAT-TG--GACTTA
73821 AAGGCCAGCTATATTGGACTTA
1 AAGGCCAGCTATATTGGACTTA
73843 AAG
1 AAG
73846 AAGAAAATGC
Statistics
Matches: 33, Mismatches: 6, Indels: 14
0.62 0.11 0.26
Matches are distributed among these distances:
19 2 0.06
20 5 0.15
21 8 0.24
22 11 0.33
23 5 0.15
24 2 0.06
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (22 bp):
AAGGCCAGCTATATTGGACTTA
Found at i:73890 original size:92 final size:92
Alignment explanation
Indices: 73703--74445 Score: 1207
Period size: 92 Copynumber: 8.0 Consensus size: 92
73693 AAGATGAGAA
* *
73703 AAAGGATGTCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAACAGGTGCCAAT
1 AAAGG-TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G-A-AGGTGCCAAT
*
73768 ATGCTGATTCAAGGCCAGCTATATTGGACTT
62 ATGCTGATTCAAGGCCAGCGATATTGGACTT
* * **
73799 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAAGAAAATGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
* * *
73864 TGATTTAAGGCCAGCTATATTAGACTT
66 TGATTCAAGGCCAGCGATATTGGACTT
*
73891 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
73956 TGATTCAAGGCCAGCGATATTGGACTT
66 TGATTCAAGGCCAGCGATATTGGACTT
* *
73983 GAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGATGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
*
74048 AGATTCAAGGCCAGCGATATTGGACTT
66 TGATTCAAGGCCAGCGATATTGGACTT
*
74075 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGATGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
**
74140 TGATTCAAGAACAGCGATATTGGACTT
66 TGATTCAAGGCCAGCGATATTGGACTT
* *
74167 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTAGACTTAAAGATGATGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
*
74232 TGATTTAAGGCCAGCGATATTGGACTT
66 TGATTCAAGGCCAGCGATATTGGACTT
* *
74259 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTAGACTTAAAGATGATGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
*
74324 TGATTCAAGGCCAACGATATTGGACTT
66 TGATTCAAGGCCAGCGATATTGGACTT
* * *
74351 AAAGGTGCCAATGTACTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGATGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
*
74416 TGGTTCAAGGCCAGCGATATTGGACTT
66 TGATTCAAGGCCAGCGATATTGGACTT
74443 AAA
1 AAA
74446 AGAAGATGCC
Statistics
Matches: 610, Mismatches: 37, Indels: 4
0.94 0.06 0.01
Matches are distributed among these distances:
92 563 0.92
93 1 0.00
94 1 0.00
95 40 0.07
96 5 0.01
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (92 bp):
AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
TGATTCAAGGCCAGCGATATTGGACTT
Found at i:74489 original size:33 final size:33
Alignment explanation
Indices: 74452--74571 Score: 179
Period size: 33 Copynumber: 3.7 Consensus size: 33
74442 TAAAAGAAGA
74452 TGCCACCAACTTGTGTGGGCTTTTGAAAAAGGT
1 TGCCACCAACTTGTGTGGGCTTTTGAAAAAGGT
* * *
74485 TGCCATCGACTTGTGTGGGCTTTAGAAAAAGGT
1 TGCCACCAACTTGTGTGGGCTTTTGAAAAAGGT
* *
74518 TGCCACCAACTTGTGTGGGC-TTTGAGAAGGGT
1 TGCCACCAACTTGTGTGGGCTTTTGAAAAAGGT
*
74550 TGCCACCGACTTGTGTGGGCTT
1 TGCCACCAACTTGTGTGGGCTT
74572 AAAAGGGTGC
Statistics
Matches: 77, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
32 28 0.36
33 49 0.64
ACGTcount: A:0.20, C:0.19, G:0.31, T:0.30
Consensus pattern (33 bp):
TGCCACCAACTTGTGTGGGCTTTTGAAAAAGGT
Found at i:74604 original size:27 final size:27
Alignment explanation
Indices: 74563--74787 Score: 198
Period size: 27 Copynumber: 7.6 Consensus size: 27
74553 CACCGACTTG
*
74563 TGTGGGCTTAAAAGGGTGCCACGGAGT
1 TGTGGACTTAAAAGGGTGCCACGGAGT
*
74590 TGTGGACTTAGAAGGAAAAGAGTGCCACGGAGT
1 TGTGGACTT------AAAAGGGTGCCACGGAGT
*
74623 TGTGGGCTTAAAAGGGTGCCACGGAGT
1 TGTGGACTTAAAAGGGTGCCACGGAGT
*
74650 TGTGGACTTAGAAGGAAAAAGAGTGCCACGGAGT
1 TGTGGACTT-------AAAAGGGTGCCACGGAGT
*
74684 TGTGGGCTTAAAAGGGTGCCACGGAGT
1 TGTGGACTTAAAAGGGTGCCACGGAGT
*
74711 TGTGGACTTAGAAGGAAAAAGAGTGCCACGGAGT
1 TGTGGACTT-------AAAAGGGTGCCACGGAGT
**
74745 TGTGGGTTTAAAAGGGTGCCACGGAGT
1 TGTGGACTTAAAAGGGTGCCACGGAGT
74772 TGTGGACTTAAAAGGG
1 TGTGGACTTAAAAGGG
74788 AAAAGAGTGC
Statistics
Matches: 163, Mismatches: 15, Indels: 40
0.75 0.07 0.18
Matches are distributed among these distances:
27 89 0.55
33 25 0.15
34 49 0.30
ACGTcount: A:0.28, C:0.12, G:0.38, T:0.21
Consensus pattern (27 bp):
TGTGGACTTAAAAGGGTGCCACGGAGT
Found at i:74676 original size:34 final size:33
Alignment explanation
Indices: 74572--75008 Score: 358
Period size: 34 Copynumber: 13.8 Consensus size: 33
74562 GTGTGGGCTT
*
74572 AAAAGGGTGCCACGGAGTTGTGGACTTAGAAGG-
1 AAAAGAGTGCCACGGAGTTGTGGACTTA-AAGGA
*
74605 AAAAGAGTGCCACGGAGTTGTGGGCTT------
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAGGA
*
74632 AAAAGGGTGCCACGGAGTTGTGGACTTAGAAGGA
1 AAAAGAGTGCCACGGAGTTGTGGACTTA-AAGGA
*
74666 AAAAGAGTGCCACGGAGTTGTGGGCTT------
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAGGA
*
74693 AAAAGGGTGCCACGGAGTTGTGGACTTAGAAGGA
1 AAAAGAGTGCCACGGAGTTGTGGACTTA-AAGGA
* *
74727 AAAAGAGTGCCACGGAGTTGTGG-GTT-----T
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAGGA
* *
74754 AAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGG
1 AAAAGAGTGCCACGGAGTTGTGGACTT-AAAGGA
74788 AAAAGAGTGCCACGGAGTTGTGGACTTAAAAAGG-
1 AAAAGAGTGCCACGGAGTTGTGGACTT--AAAGGA
* *
74822 AAAAGAGTGCCATGGAGTTGTGGGCTTAAAAGGGA
1 AAAAGAGTGCCACGGAGTTGTGGACTT-AAA-GGA
**
74857 AAAA-AGTGCCACGGAG-TGTGGACTTTGA-GA
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAGGA
* * * *
74887 CAAA-A-TGCCACTGAGTTGTGGGCTT----TA
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAGGA
* *
74914 AAAAGAGGGCCACGGAGTTGTGGACTTTTAAAAGA
1 AAAAGAGTGCCACGGAGTTGTGGAC--TTAAAGGA
* *
74949 AAAA-AGTGCCACGGAGTCGTGGACTTTGAAGGA
1 AAAAGAGTGCCACGGAGTTGTGGAC-TTAAAGGA
* *
74982 AAAAGAGTGCCACGAAGTCGTGGACTT
1 AAAAGAGTGCCACGGAGTTGTGGACTT
75009 TGAGAAAGTA
Statistics
Matches: 335, Mismatches: 35, Indels: 68
0.76 0.08 0.16
Matches are distributed among these distances:
27 76 0.23
28 3 0.01
29 24 0.07
30 14 0.04
31 2 0.01
32 1 0.00
33 52 0.16
34 148 0.44
35 15 0.04
ACGTcount: A:0.32, C:0.13, G:0.35, T:0.20
Consensus pattern (33 bp):
AAAAGAGTGCCACGGAGTTGTGGACTTAAAGGA
Found at i:74700 original size:61 final size:61
Alignment explanation
Indices: 74563--74877 Score: 474
Period size: 61 Copynumber: 5.1 Consensus size: 61
74553 CACCGACTTG
74563 TGTGGGCTTAAAAGGGTGCCACGGAGTTGTGGACTTAGAAGG-AAAAGAGTGCCACGGAGT
1 TGTGGGCTTAAAAGGGTGCCACGGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGGAGT
74623 TGTGGGCTTAAAAGGGTGCCACGGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTTAAAAGGGTGCCACGGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGGAGT
74684 TGTGGGCTTAAAAGGGTGCCACGGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTTAAAAGGGTGCCACGGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGGAGT
* * *
74745 TGTGGGTTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGAAAAGAGTGCCACGGAGT
1 TGTGGGCTTAAAAGGGTGCCACGGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGGAGT
* * * *
74806 TGTGGACTTAAAAAGGAAAAGAGTGCCATGGAGTTGTGGGCTTAAAAGGGAAAAA-AGTGCCACG
1 TGTGGGCTT-AAAA-G----G-GTGCCACGGAGTTGTGGACTTAGAA-GGAAAAAGAGTGCCACG
74870 GAG-
58 GAGT
74873 TGTGG
1 TGTGG
74878 ACTTTGAGAC
Statistics
Matches: 238, Mismatches: 8, Indels: 11
0.93 0.03 0.04
Matches are distributed among these distances:
60 42 0.18
61 144 0.61
62 4 0.02
63 1 0.00
67 6 0.03
68 35 0.15
69 6 0.03
ACGTcount: A:0.30, C:0.12, G:0.37, T:0.20
Consensus pattern (61 bp):
TGTGGGCTTAAAAGGGTGCCACGGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGGAGT
Found at i:74749 original size:95 final size:96
Alignment explanation
Indices: 74572--74974 Score: 300
Period size: 95 Copynumber: 4.3 Consensus size: 96
74562 GTGTGGGCTT
* * *
74572 AAAAGGGTGCCACGGAGTTGTGGACTTAGAAGGAAAAGAGTGCCACGGAGTTGTGGGCTT-AAAA
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAAGG---AGAGTGCCACGGAGTTGTGGACTTAAAAA
74636 -G----G-GTGCCACGGAGTTGTGGACTTAGAAGGA
63 GGAAAAGAGTGCCACGGAGTTGTGG-CTTA-AAGGA
* *
74666 AAAAGAGTGCCACGGAGTTGTGGGCTTAAAA-G-G-GTGCCACGGAGTTGTGGACTT-AGAAGGA
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGAGAGTGCCACGGAGTTGTGGACTTAAAAAGG-
* *
74727 AAAAGAGTGCCACGGAGTTGTGGGTT-----T
65 AAAAGAGTGCCACGGAGTTGTGGCTTAAAGGA
*
74754 AAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGAAAAGAGTGCCACGGAGTTGTGGACTTAAAA
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAA-GG---AGAGTGCCACGGAGTTGTGGACTTAAAA
*
74819 AGGAAAAGAGTGCCATGGAGTTGTGGGCTTAAAAGGGA
62 AGGAAAAGAGTGCCACGGAGTTGT-GGCTT-AAA-GGA
** * * * * *
74857 AAAA-AGTGCCACGGAG-TGTGGACTT-TGAGACAAAATGCCACTGAGTTGTGGGCTTTAAAAA-
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAAG-GAGAGTGCCACGGAGTTGTGGAC-TTAAAAAG
*
74918 G---AG-G-GCCACGGAGTTGTGGACTTTTAAAAGA
64 GAAAAGAGTGCCACGGAGTTGTGG-C--TTAAAGGA
*
74949 AAAA-AGTGCCACGGAGTCGTGGACTT
1 AAAAGAGTGCCACGGAGTTGTGGACTT
74975 TGAAGGAAAA
Statistics
Matches: 256, Mismatches: 24, Indels: 59
0.76 0.07 0.17
Matches are distributed among these distances:
88 52 0.20
89 2 0.01
90 1 0.00
91 2 0.01
92 31 0.12
93 13 0.05
94 36 0.14
95 58 0.23
96 9 0.04
97 19 0.07
98 7 0.03
99 1 0.00
100 1 0.00
101 9 0.04
102 11 0.04
103 4 0.02
ACGTcount: A:0.32, C:0.13, G:0.35, T:0.20
Consensus pattern (96 bp):
AAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGAGAGTGCCACGGAGTTGTGGACTTAAAAAGGA
AAAGAGTGCCACGGAGTTGTGGCTTAAAGGA
Found at i:74865 original size:68 final size:65
Alignment explanation
Indices: 74572--75008 Score: 398
Period size: 61 Copynumber: 6.9 Consensus size: 65
74562 GTGTGGGCTT
* * * *
74572 AAAAGGGTGCCACGGAGTTGTGGACTTAGAAGGAAAAGAGTGCCACGGAGTTGTGGGCTTAAAAG
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAAGTGCCACGGAGTTGTGGACTTAAAAG
* *
74637 ----G-GTGCCACGGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAAAA
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGAAAAA-AGTGCCACGGAGTTGTGGACTTAAAA
74697 G
65 G
* **
74698 ----G-GTGCCACGGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGGTTTAAAA
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGAAAAA-AGTGCCACGGAGTTGTGGACTTAAAA
74758 G
65 G
*
74759 ----G-GTGCCACGGAGTTGTGGACTTAAAAGGGAAAAGAGTGCCACGGAGTTGTGGACTTAAAA
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAA-GGAAAAAAGTGCCACGGAGTTGTGGACTT-AAA
74819 AGG
64 A-G
* * **
74822 AAAAGAGTGCCATGGAGTTGTGGGCTTAAAAGGGAAAAAAGTGCCACGGAG-TGTGGACTT-TGA
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAA-GGAAAAAAGTGCCACGGAGTTGTGGACTTAAAA
74885 G
65 G
* * * * *
74886 ACAAA-A-TGCCACTGAGTTGTGGGCTT--TA--AAAAGAGGGCCACGGAGTTGTGGACTTTTAA
1 A-AAAGAGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAAGTGCCACGGAGTTGTGGAC--TTAA
74945 AAG
63 AAG
* * ** * *
74948 AAAAAAGTGCCACGGAGTCGTGGACTTTGAAGGAAAAAGAGTGCCACGAAGTCGTGGACTT
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGAAAAA-AGTGCCACGGAGTTGTGGACTT
75009 TGAGAAAGTA
Statistics
Matches: 325, Mismatches: 26, Indels: 41
0.83 0.07 0.10
Matches are distributed among these distances:
58 15 0.05
59 7 0.02
60 31 0.10
61 139 0.43
62 14 0.04
63 36 0.11
64 3 0.01
65 5 0.02
66 2 0.01
67 14 0.04
68 59 0.18
ACGTcount: A:0.32, C:0.13, G:0.35, T:0.20
Consensus pattern (65 bp):
AAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAAGTGCCACGGAGTTGTGGACTTAAAAG
Found at i:74925 original size:29 final size:29
Alignment explanation
Indices: 74856--74948 Score: 86
Period size: 29 Copynumber: 3.2 Consensus size: 29
74846 CTTAAAAGGG
*
74856 AAAAA-AGTGCCACGGAG-TGTGGACTTT
1 AAAAAGAGGGCCACGGAGTTGTGGACTTT
* * *
74883 GAGACAAA-A-TGCCACTGAGTTGTGGGCTTT
1 -A-A-AAAGAGGGCCACGGAGTTGTGGACTTT
74913 AAAAAGAGGGCCACGGAGTTGTGGACTTT
1 AAAAAGAGGGCCACGGAGTTGTGGACTTT
*
74942 TAAAAGA
1 AAAAAGA
74949 AAAAAGTGCC
Statistics
Matches: 54, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
27 3 0.06
28 3 0.06
29 35 0.65
30 13 0.24
ACGTcount: A:0.33, C:0.14, G:0.30, T:0.23
Consensus pattern (29 bp):
AAAAAGAGGGCCACGGAGTTGTGGACTTT
Found at i:75975 original size:13 final size:13
Alignment explanation
Indices: 75959--76001 Score: 61
Period size: 13 Copynumber: 3.3 Consensus size: 13
75949 TTTTTCCCCT
75959 TTTTTTTTGTTTG
1 TTTTTTTTGTTTG
75972 TTTTTTTTGTTT-
1 TTTTTTTTGTTTG
*
75984 TTTTTTCTTTTTTG
1 TTTTTT-TTGTTTG
75998 TTTT
1 TTTT
76002 GTTTCTTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
12 6 0.22
13 17 0.63
14 4 0.15
ACGTcount: A:0.00, C:0.02, G:0.09, T:0.88
Consensus pattern (13 bp):
TTTTTTTTGTTTG
Found at i:75987 original size:26 final size:26
Alignment explanation
Indices: 75958--76012 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
75948 GTTTTTCCCC
* * *
75958 TTTTTTT-TTGTTTGTTTTTTTTGTT
1 TTTTTTTCTTTTTTGTTTTGTTTCTT
75983 TTTTTTTCTTTTTTGTTTTGTTTCTT
1 TTTTTTTCTTTTTTGTTTTGTTTCTT
76009 TTTT
1 TTTT
76013 GGAAAAGAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.00, C:0.04, G:0.09, T:0.87
Consensus pattern (26 bp):
TTTTTTTCTTTTTTGTTTTGTTTCTT
Found at i:76013 original size:16 final size:16
Alignment explanation
Indices: 75961--76013 Score: 67
Period size: 16 Copynumber: 3.4 Consensus size: 16
75951 TTTCCCCTTT
75961 TTTTTTG-TTTG-TT-
1 TTTTTTGTTTTGTTTC
*
75974 TTTTTTGTTTTTTTTTC
1 TTTTTTG-TTTTGTTTC
75991 TTTTTTGTTTTGTTTC
1 TTTTTTGTTTTGTTTC
76007 TTTTTTG
1 TTTTTTG
76014 GAAAAGAACA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
13 7 0.21
15 3 0.09
16 17 0.50
17 7 0.21
ACGTcount: A:0.00, C:0.04, G:0.11, T:0.85
Consensus pattern (16 bp):
TTTTTTGTTTTGTTTC
Found at i:83284 original size:52 final size:52
Alignment explanation
Indices: 83136--83264 Score: 222
Period size: 52 Copynumber: 2.5 Consensus size: 52
83126 CGAAATATGA
* *
83136 AAATTTGTCTGCTTGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
* *
83188 AAATTTGCCTGCATGTATCAATACATTTTATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
83240 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
83265 AAGATCAGTG
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 72 1.00
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
Found at i:83291 original size:13 final size:13
Alignment explanation
Indices: 83273--83297 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
83263 CAAAGATCAG
83273 TGTATCGATACAA
1 TGTATCGATACAA
83286 TGTATCGATACA
1 TGTATCGATACA
83298 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:83365 original size:19 final size:18
Alignment explanation
Indices: 83341--83438 Score: 81
Period size: 19 Copynumber: 5.8 Consensus size: 18
83331 TAGCTTACAT
83341 TGTATCGATACAAAACTTA
1 TGTATCGATAC-AAACTTA
83360 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
*
83373 TGTATCGATGCAACACTTA
1 TGTATCGATACAA-ACTTA
83392 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
83405 TGTATCGATACAACACTTTA
1 TGTATCGATACAA-AC-TTA
83425 TGTATCGATACAAA
1 TGTATCGATACAAA
83439 TCGTTGAAAT
Statistics
Matches: 64, Mismatches: 2, Indels: 26
0.70 0.02 0.28
Matches are distributed among these distances:
13 21 0.33
14 2 0.03
16 4 0.06
18 1 0.02
19 23 0.36
20 13 0.20
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.34
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:83377 original size:32 final size:32
Alignment explanation
Indices: 83336--83436 Score: 175
Period size: 32 Copynumber: 3.1 Consensus size: 32
83326 GGCAGTAGCT
*
83336 TACATTGTATCGATACAAAACTTATGTATCGA
1 TACATTGTATCGATACAACACTTATGTATCGA
*
83368 TACATTGTATCGATGCAACACTTATGTATCGA
1 TACATTGTATCGATACAACACTTATGTATCGA
83400 TACATTGTATCGATACAACACTTTATGTATCGA
1 TACATTGTATCGATACAACAC-TTATGTATCGA
83433 TACA
1 TACA
83437 AATCGTTGAA
Statistics
Matches: 65, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
32 50 0.77
33 15 0.23
ACGTcount: A:0.35, C:0.18, G:0.13, T:0.35
Consensus pattern (32 bp):
TACATTGTATCGATACAACACTTATGTATCGA
Found at i:83378 original size:13 final size:13
Alignment explanation
Indices: 83360--83416 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
83350 ACAAAACTTA
83360 TGTATCGATACAT
1 TGTATCGATACAT
83373 TGTATCGATGCAACACTT
1 TGTATCGAT---ACA--T
83391 ATGTATCGATACAT
1 -TGTATCGATACAT
83405 TGTATCGATACA
1 TGTATCGATACA
83417 ACACTTTATG
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 21 0.55
14 1 0.03
16 6 0.16
18 1 0.03
19 9 0.24
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.35
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:91180 original size:23 final size:23
Alignment explanation
Indices: 91154--91225 Score: 101
Period size: 23 Copynumber: 3.1 Consensus size: 23
91144 CTTCCTTTAA
*
91154 AAAAAACAACAAAAAAACAAACC
1 AAAAAACAACAAAAAAACAAAAC
* *
91177 AAAAAA-AGCAAAAAAAACAAAAA
1 AAAAAACAAC-AAAAAAACAAAAC
91200 AAAAAACAACAAAAAAACAAAAC
1 AAAAAACAACAAAAAAACAAAAC
91223 AAA
1 AAA
91226 GAAAAAAGAG
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
22 2 0.05
23 38 0.90
24 2 0.05
ACGTcount: A:0.83, C:0.15, G:0.01, T:0.00
Consensus pattern (23 bp):
AAAAAACAACAAAAAAACAAAAC
Found at i:91181 original size:14 final size:13
Alignment explanation
Indices: 91152--91231 Score: 68
Period size: 11 Copynumber: 6.6 Consensus size: 13
91142 ACCTTCCTTT
91152 AAAAAAAAC-AAC
1 AAAAAAAACAAAC
91164 -AAAAAAACAAAC
1 AAAAAAAACAAAC
* *
91176 --CAAAAA-AAGC
1 AAAAAAAACAAAC
91186 AAAAAAAACAAA-
1 AAAAAAAACAAAC
91198 AAAAAAAAC-AAC
1 AAAAAAAACAAAC
91210 -AAAAAAACAAAAC
1 AAAAAAAAC-AAAC
91223 AAAGAAAAA
1 AAA-AAAAA
91232 AGAGAGAAAA
Statistics
Matches: 55, Mismatches: 4, Indels: 15
0.74 0.05 0.20
Matches are distributed among these distances:
10 3 0.05
11 23 0.42
12 17 0.31
13 5 0.09
14 2 0.04
15 5 0.09
ACGTcount: A:0.84, C:0.14, G:0.03, T:0.00
Consensus pattern (13 bp):
AAAAAAAACAAAC
Found at i:91190 original size:9 final size:8
Alignment explanation
Indices: 91153--91232 Score: 74
Period size: 8 Copynumber: 9.8 Consensus size: 8
91143 CCTTCCTTTA
91153 AAAAAAAC
1 AAAAAAAC
91161 AACAAAAA-
1 AA-AAAAAC
* *
91169 AACAAACC
1 AAAAAAAC
91177 AAAAAAAGC
1 AAAAAAA-C
91186 AAAAAAAAC
1 -AAAAAAAC
91195 AAAAAAA-
1 AAAAAAAC
*
91202 AAAACAAC
1 AAAAAAAC
91210 AAAAAAAC
1 AAAAAAAC
*
91218 AAAACAAAG
1 AAAA-AAAC
91227 AAAAAA
1 AAAAAA
91233 GAGAGAAAAA
Statistics
Matches: 59, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
7 9 0.15
8 29 0.49
9 14 0.24
10 7 0.12
ACGTcount: A:0.84, C:0.14, G:0.03, T:0.00
Consensus pattern (8 bp):
AAAAAAAC
Found at i:91231 original size:32 final size:35
Alignment explanation
Indices: 91152--91232 Score: 107
Period size: 32 Copynumber: 2.4 Consensus size: 35
91142 ACCTTCCTTT
*
91152 AAAAAAAAC-AACAAAAAAACAAACCAAAAAAAGC
1 AAAAAAAACAAAAAAAAAAACAAACCAAAAAAAGC
91186 AAAAAAAACAAAAAAAAAAAC-AA-CAAAAAAA-C
1 AAAAAAAACAAAAAAAAAAACAAACCAAAAAAAGC
* *
91218 AAAACAAAGAAAAAA
1 AAAAAAAACAAAAAA
91233 GAGAGAAAAA
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
32 14 0.33
33 8 0.19
34 11 0.26
35 10 0.23
ACGTcount: A:0.84, C:0.14, G:0.02, T:0.00
Consensus pattern (35 bp):
AAAAAAAACAAAAAAAAAAACAAACCAAAAAAAGC
Found at i:91232 original size:11 final size:11
Alignment explanation
Indices: 91152--91221 Score: 79
Period size: 11 Copynumber: 6.2 Consensus size: 11
91142 ACCTTCCTTT
91152 AAAAAAAACAA
1 AAAAAAAACAA
*
91163 CAAAAAAACAA
1 AAAAAAAACAA
91174 ACCAAAAAAAGCAA
1 A--AAAAAAA-CAA
*
91188 AAAAAACA-AA
1 AAAAAAAACAA
91198 AAAAAAAACAA
1 AAAAAAAACAA
*
91209 CAAAAAAACAA
1 AAAAAAAACAA
91220 AA
1 AA
91222 CAAAGAAAAA
Statistics
Matches: 49, Mismatches: 6, Indels: 8
0.78 0.10 0.13
Matches are distributed among these distances:
10 9 0.18
11 23 0.47
12 6 0.12
13 7 0.14
14 4 0.08
ACGTcount: A:0.84, C:0.14, G:0.01, T:0.00
Consensus pattern (11 bp):
AAAAAAAACAA
Found at i:92858 original size:61 final size:61
Alignment explanation
Indices: 92332--93085 Score: 841
Period size: 61 Copynumber: 12.8 Consensus size: 61
92322 GAGCAGGATG
* * * * *
92332 CCTTTCAAAGCGCACACAAGCTGGTGGCACCTTC-AGTCCTCAAAGAGCGGGATGCCTTTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGACGCCTTTT
*
92392 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC-AGTCCTCAAAGAGCAGGACGCCTTCT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGACGCCTTTT
* * ** *
92452 CCTTTCAAAGCCCACACAAGTT-GTTGCATTTTCCAGTCCTCAAAGAGCAGGACG-----T
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGACGCCTTTT
*
92507 -CTTTCAAAGCCCACACAAGTTGGTGGCACCTTC-AGTCCTCAAAGAGCAGGACGCCTTTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGACGCCTTTT
*
92566 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACG-----T
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGACGCCTTTT
* * ** *
92622 -CTTTCAAAGCCCAGACAAGTTGGTGGCATTTTCTAGTCCTCAAAGAGTAGGACGCC-TTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGACGCCTTTT
** * *
92681 -C----AAAGCCCACACAAGTTGGTGGCATTTTATAGTCCTCAAAGAGGAGGACGCC-TTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGACGCCTTTT
* * * *
92736 -C----AAAGCCCACACAAGCTAGTGGCACCTTC-AGTCCTCAAAGAGCGGGACGTCTTTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGACGCCTTTT
* * *
92791 CTTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCGGGATGCCTTTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGACGCCTTTT
* * * *
92852 CCTTTTAAAGCTCATACAAGTTGGTGGCA-CTTTTCAGTCCTCAAGGAGCAGGACGCCTTTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCT-AGTCCTCAAAGAGCAGGACGCCTTTT
* * * * * *
92913 CCTTTTAAAGCCCAAACAAGTTGGTGGCACTTTTTAGTCCTCAAGGAACAGGATGCCTTTTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGACGCC-TTTT
* *
92975 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAAGATG-CTTTCT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGACGCCTTT-T
** * * * *
93036 CCTTGCAAAGCCCATACAAGTTGGTGGCAGCTTCTAGTCCCCAAGGAGCA
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCA
93086 AGACCCATTT
Statistics
Matches: 609, Mismatches: 61, Indels: 47
0.85 0.09 0.07
Matches are distributed among these distances:
54 60 0.10
55 135 0.22
56 1 0.00
59 11 0.02
60 159 0.26
61 186 0.31
62 57 0.09
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (61 bp):
CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGACGCCTTTT
Found at i:93760 original size:30 final size:29
Alignment explanation
Indices: 93724--93815 Score: 94
Period size: 30 Copynumber: 3.4 Consensus size: 29
93714 TTATTTATTA
93724 TATCGATACATTCTGAGTTTTACCTAGATG
1 TATCGATACATTCTGAGTTTTACC-AGATG
*
93754 TATCGATACA-T-T--G--TT--CA-TTG
1 TATCGATACATTCTGAGTTTTACCAGATG
93774 TATCGATACATTCTGAGTTTTACCCAGATG
1 TATCGATACATTCTGAGTTTTA-CCAGATG
93804 TATCGATACATT
1 TATCGATACATT
93816 GTTCATTGTA
Statistics
Matches: 50, Mismatches: 2, Indels: 20
0.69 0.03 0.28
Matches are distributed among these distances:
20 12 0.24
21 2 0.04
22 2 0.04
24 3 0.06
26 3 0.06
28 1 0.02
29 3 0.06
30 24 0.48
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.40
Consensus pattern (29 bp):
TATCGATACATTCTGAGTTTTACCAGATG
Found at i:93761 original size:50 final size:50
Alignment explanation
Indices: 93702--93885 Score: 271
Period size: 50 Copynumber: 3.7 Consensus size: 50
93692 TTTCACAATT
* * * *
93702 TGTATCGATACATTATTTATTATATCGATACATTCTGAGTTTTACCTAGA
1 TGTATCGATACATTGTTCATTGTATCGATACATTCTGAGTTTTACCCAGA
93752 TGTATCGATACATTGTTCATTGTATCGATACATTCTGAGTTTTACCCAGA
1 TGTATCGATACATTGTTCATTGTATCGATACATTCTGAGTTTTACCCAGA
* * *
93802 TGTATCGATACATTGTTCATTGTATTGATACATTC-CAGATTTACCCAGA
1 TGTATCGATACATTGTTCATTGTATCGATACATTCTGAGTTTTACCCAGA
* * *
93851 TGTATCGATATATTTTTCAATGTATCGATACATTC
1 TGTATCGATACATTGTTCATTGTATCGATACATTC
93886 AGGCATTTTT
Statistics
Matches: 123, Mismatches: 11, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
49 43 0.35
50 80 0.65
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.42
Consensus pattern (50 bp):
TGTATCGATACATTGTTCATTGTATCGATACATTCTGAGTTTTACCCAGA
Found at i:93852 original size:99 final size:100
Alignment explanation
Indices: 93702--93885 Score: 271
Period size: 99 Copynumber: 1.9 Consensus size: 100
93692 TTTCACAATT
* * * *
93702 TGTATCGATACATTATTTATTATATCGATACATTCTGAGTTTTACCTAGATGTATCGATACATTG
1 TGTATCGATACATTATTCATTATATCGATACATTCTCAGATTTACCCAGATGTATCGATACATTG
*
93767 TTCATTGTATCGATACATTCTGAGTTTTACCCAGA
66 TTCAATGTATCGATACATTCTGAGTTTTACCCAGA
* * * * *
93802 TGTATCGATACATTGTTCATTGTATTGATACATTC-CAGATTTACCCAGATGTATCGATATATTT
1 TGTATCGATACATTATTCATTATATCGATACATTCTCAGATTTACCCAGATGTATCGATACATTG
93866 TTCAATGTATCGATACATTC
66 TTCAATGTATCGATACATTC
93886 AGGCATTTTT
Statistics
Matches: 74, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
99 43 0.58
100 31 0.42
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.42
Consensus pattern (100 bp):
TGTATCGATACATTATTCATTATATCGATACATTCTCAGATTTACCCAGATGTATCGATACATTG
TTCAATGTATCGATACATTCTGAGTTTTACCCAGA
Found at i:96327 original size:78 final size:79
Alignment explanation
Indices: 96222--96400 Score: 211
Period size: 78 Copynumber: 2.3 Consensus size: 79
96212 AATTTTTTAT
* * * * * * *
96222 AATCGGGGATACTCCAAACTCGTTATTTCCGAGGGGATACTCTAACCCCGGCTTTATTTCTGAA-
1 AATCAGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGACCTTATTTCTAAAG
*
96286 -ATACTAATTTCTCAC
66 CAT-CGAATTTC-CAC
* *
96301 AATCAGGGATACTCCAACCCCG-TATTTTCGCGGGGATACTCCAACCCCGACCTTATTTCTAAAG
1 AATCAGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGACCTTATTTCTAAAG
*
96365 CATCGATTTTCCAC
66 CATCGAATTTCCAC
*
96379 AATTAGGGATACTCCAACCCCG
1 AATCAGGGATACTCCAACCCCG
96401 ACTTTATTTC
Statistics
Matches: 86, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
78 59 0.69
79 25 0.29
80 2 0.02
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.28
Consensus pattern (79 bp):
AATCAGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGACCTTATTTCTAAAG
CATCGAATTTCCAC
Found at i:96389 original size:51 final size:51
Alignment explanation
Indices: 96333--96451 Score: 159
Period size: 51 Copynumber: 2.3 Consensus size: 51
96323 TATTTTCGCG
* *
96333 GGGATACTCCAACCCCGACCTTATTTCTAAAGCATCGATTT-TCCACAATTA
1 GGGATACTCCAACCCCGACCTTATTTCTAAAACATCGATTTCT-CACAATCA
* * * *
96384 GGGATACTCCAACCCCGACTTTATTTCTAAAATATTGATTTCTCACAATCG
1 GGGATACTCCAACCCCGACCTTATTTCTAAAACATCGATTTCTCACAATCA
*
96435 GGGATATTCCAACCCCG
1 GGGATACTCCAACCCCG
96452 TTATTTTCAC
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
51 59 0.98
52 1 0.02
ACGTcount: A:0.29, C:0.29, G:0.13, T:0.29
Consensus pattern (51 bp):
GGGATACTCCAACCCCGACCTTATTTCTAAAACATCGATTTCTCACAATCA
Found at i:96478 original size:79 final size:79
Alignment explanation
Indices: 96383--96687 Score: 296
Period size: 79 Copynumber: 3.9 Consensus size: 79
96373 TTCCACAATT
* ** * *
96383 AGGGATACTCCAACCCCGACTTTATTTCTAAAATATTGATTTCTCACAATCGGGGATATTCCAAC
1 AGGGATACTCCAACCCCGACTTTATTTCTAAAACACCGATTTTTCACAATCGAGGATATTCCAAC
*
96448 CCCGTTA-TTTTCA
66 CCCGTTATTTTTGA
* * * * *
96461 CAGGGATACTCCAACCCCGGCCTTATTTCTAAAGCATCGATTTTTCACAATCGAGGATACTCCAA
1 -AGGGATACTCCAACCCCGACTTTATTTCTAAAACACCGATTTTTCACAATCGAGGATATTCCAA
**
96526 CCTTGTTATTTTTGA
65 CCCCGTTATTTTTGA
* * * *
96541 GGGGATACTCCAACCCCGATTTTATTT-TCAAAACACCGA-TTTTCTATAATCAAGGATACTT-C
1 AGGGATACTCCAACCCCGACTTTATTTCT-AAAACACCGATTTTTC-ACAATCGAGGATA-TTCC
*
96603 AACCCTGTTATTTTTGA
63 AACCCCGTTATTTTTGA
* * * * * * * *
96620 GGGGATACTCCAACCTCGATTTTATTTCCAGAACACTGATTTTTCATAATCG-GAGATATTCCAG
1 AGGGATACTCCAACCCCGACTTTATTTCTAAAACACCGATTTTTCACAATCGAG-GATATTCCAA
96684 CCCC
65 CCCC
96688 ATTGTCATCT
Statistics
Matches: 190, Mismatches: 28, Indels: 16
0.81 0.12 0.07
Matches are distributed among these distances:
78 9 0.05
79 170 0.89
80 11 0.06
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (79 bp):
AGGGATACTCCAACCCCGACTTTATTTCTAAAACACCGATTTTTCACAATCGAGGATATTCCAAC
CCCGTTATTTTTGA
Found at i:96521 original size:130 final size:129
Alignment explanation
Indices: 96255--96527 Score: 413
Period size: 130 Copynumber: 2.1 Consensus size: 129
96245 TATTTCCGAG
* * *
96255 GGGATACTCTAACCCCGGCTTTATTTCTGAAATACTAATTTCTCACAATCAGGGATACTCCAACC
1 GGGATACTCCAACCCCGACTTTATTTCTAAAATACTAATTTCTCACAATCAGGGATACTCCAACC
* * *
96320 CCGTATTTTCGCGGGGATACTCCAACCCCGACCTTATTTCTAAAGCATCGATTTTCCACAATTA
66 CCGTATTTTCACAGGGATACTCCAACCCCGACCTTATTTCTAAAGCATCGATTTTCCACAATGA
* * * *
96384 GGGATACTCCAACCCCGACTTTATTTCTAAAATATTGATTTCTCACAATCGGGGATATTCCAACC
1 GGGATACTCCAACCCCGACTTTATTTCTAAAATACTAATTTCTCACAATCAGGGATACTCCAACC
* *
96449 CCGTTATTTTCACAGGGATACTCCAACCCCGGCCTTATTTCTAAAGCATCGATTTTTCACAATCG
66 CCG-TATTTTCACAGGGATACTCCAACCCCGACCTTATTTCTAAAGCATCGATTTTCCACAAT-G
96514 A
129 A
96515 -GGATACTCCAACC
1 GGGATACTCCAACC
96528 TTGTTATTTT
Statistics
Matches: 130, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
129 61 0.47
130 68 0.52
131 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.14, T:0.30
Consensus pattern (129 bp):
GGGATACTCCAACCCCGACTTTATTTCTAAAATACTAATTTCTCACAATCAGGGATACTCCAACC
CCGTATTTTCACAGGGATACTCCAACCCCGACCTTATTTCTAAAGCATCGATTTTCCACAATGA
Found at i:99697 original size:14 final size:15
Alignment explanation
Indices: 99674--99712 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
99664 TTTAAATTTA
*
99674 TTAAATTTAATTATT
1 TTAAATTTAATCATT
99689 TTAAA-TTAATCATT
1 TTAAATTTAATCATT
*
99703 TTAATTTTAA
1 TTAAATTTAA
99713 ATTTAATTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 12 0.57
15 9 0.43
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (15 bp):
TTAAATTTAATCATT
Found at i:99709 original size:37 final size:35
Alignment explanation
Indices: 99652--99731 Score: 99
Period size: 37 Copynumber: 2.2 Consensus size: 35
99642 TTTGAGTCAA
99652 TTAAATTTAATATTTAAATTTATTAAATTTAA-TTATT
1 TTAAA-TTAATATTTAAA-TT-TTAAATTTAATTTATT
*
99689 TTAAATTAATCATTTTAATTTTAAATTTAATTTATT
1 TTAAATTAAT-ATTTAAATTTTAAATTTAATTTATT
99725 TTGAAAT
1 TT-AAAT
99732 GATGTAAAGA
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
35 10 0.26
36 14 0.36
37 15 0.38
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.56
Consensus pattern (35 bp):
TTAAATTAATATTTAAATTTTAAATTTAATTTATT
Found at i:99858 original size:17 final size:14
Alignment explanation
Indices: 99803--99850 Score: 51
Period size: 14 Copynumber: 3.1 Consensus size: 14
99793 TATATTTCAT
99803 AAAAGAAAAAAATAGA
1 AAAAGAAAAAAA-A-A
*
99819 AGCAAGCAAAAAAAAA
1 A-AAAG-AAAAAAAAA
99835 AAAAGAAAAAAAAA
1 AAAAGAAAAAAAAA
99849 AA
1 AA
99851 GGGAAGAACA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
14 11 0.39
15 3 0.11
16 3 0.11
17 4 0.14
18 7 0.25
ACGTcount: A:0.83, C:0.04, G:0.10, T:0.02
Consensus pattern (14 bp):
AAAAGAAAAAAAAA
Found at i:100843 original size:2 final size:2
Alignment explanation
Indices: 100830--100862 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
100820 TGTTTGTATG
*
100830 TA TA TA TT TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
100863 GTAAGTCATT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (2 bp):
TA
Found at i:101144 original size:2 final size:2
Alignment explanation
Indices: 101137--101182 Score: 83
Period size: 2 Copynumber: 23.0 Consensus size: 2
101127 CTCGAGCTTA
*
101137 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
101179 AT AT
1 AT AT
101183 TTAGAATGGG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:107595 original size:2 final size:2
Alignment explanation
Indices: 107588--107614 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
107578 CTAAAACCAT
107588 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
107615 GTATTGTGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:108504 original size:8 final size:8
Alignment explanation
Indices: 108473--108523 Score: 61
Period size: 8 Copynumber: 6.4 Consensus size: 8
108463 TTCATAAAAA
108473 TTAATA-T
1 TTAATATT
108480 TTAATAATT
1 TTAAT-ATT
108489 TTAA-ATT
1 TTAATATT
108496 TTAATATT
1 TTAATATT
108504 TTAATATT
1 TTAATATT
*
108512 TATAATTTT
1 T-TAATATT
108521 TTA
1 TTA
108524 TTCTCAAATT
Statistics
Matches: 39, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
7 12 0.31
8 15 0.38
9 12 0.31
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (8 bp):
TTAATATT
Found at i:108753 original size:2 final size:2
Alignment explanation
Indices: 108746--108774 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
108736 AATGAACGAT
108746 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
108775 GATGAAATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:108962 original size:25 final size:24
Alignment explanation
Indices: 108934--109006 Score: 66
Period size: 24 Copynumber: 3.2 Consensus size: 24
108924 TAATTTTTTC
108934 CTTTTTCTTTTCTCTTTACTCATTT
1 CTTTTTCTTTTCTCTTTACTC-TTT
* *
108959 CTTTCT-TTTTCTATATTACTCTTT
1 CTTTTTCTTTTCTCT-TTACTCTTT
*
108983 C-ATTTC-TTTCTCTTT--TCTTT
1 CTTTTTCTTTTCTCTTTACTCTTT
109003 CTTT
1 CTTT
109007 CTTAAAATAA
Statistics
Matches: 39, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
20 6 0.15
21 1 0.03
22 2 0.05
23 8 0.21
24 11 0.28
25 11 0.28
ACGTcount: A:0.08, C:0.23, G:0.00, T:0.68
Consensus pattern (24 bp):
CTTTTTCTTTTCTCTTTACTCTTT
Found at i:108966 original size:29 final size:27
Alignment explanation
Indices: 108926--109002 Score: 77
Period size: 29 Copynumber: 2.7 Consensus size: 27
108916 CAAATATTTA
108926 ATTT-TTTCCTTTTTCTTTT-CTCTTTACTC
1 ATTTCTTT-CTTTTTCTTTTACTC-TT--TC
108955 ATTTCTTTCTTTTTCTATATTACTCTTTC
1 ATTTCTTTCTTTTTCT-T-TTACTCTTTC
108984 ATTTCTTTCTCTTTTCTTT
1 ATTTCTTTCT-TTTTCTTT
109003 CTTTCTTAAA
Statistics
Matches: 43, Mismatches: 0, Indels: 11
0.80 0.00 0.20
Matches are distributed among these distances:
28 1 0.02
29 25 0.58
30 10 0.23
31 4 0.09
32 3 0.07
ACGTcount: A:0.09, C:0.22, G:0.00, T:0.69
Consensus pattern (27 bp):
ATTTCTTTCTTTTTCTTTTACTCTTTC
Found at i:108983 original size:24 final size:25
Alignment explanation
Indices: 108937--108991 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
108927 TTTTTTCCTT
*
108937 TTTC-TTTTCTCTTTACTCATTTC-
1 TTTCTTTTTCTATTTACTCATTTCA
108960 TTTCTTTTTCTATATTACTC-TTTCA
1 TTTCTTTTTCTAT-TTACTCATTTCA
108985 TTTCTTT
1 TTTCTTT
108992 CTCTTTTCTT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
23 4 0.14
24 11 0.39
25 13 0.46
ACGTcount: A:0.11, C:0.22, G:0.00, T:0.67
Consensus pattern (25 bp):
TTTCTTTTTCTATTTACTCATTTCA
Found at i:108997 original size:15 final size:14
Alignment explanation
Indices: 108956--109008 Score: 52
Period size: 15 Copynumber: 3.6 Consensus size: 14
108946 TCTTTACTCA
*
108956 TTTCTTTCTTTTTC
1 TTTCTTTCTCTTTC
* * *
108970 TATATTACTCTTTC
1 TTTCTTTCTCTTTC
108984 ATTTCTTTCTCTTTTC
1 -TTTCTTTCTC-TTTC
109000 TTTCTTTCT
1 TTTCTTTCT
109009 TAAAATAATT
Statistics
Matches: 30, Mismatches: 7, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
14 10 0.33
15 16 0.53
16 4 0.13
ACGTcount: A:0.08, C:0.23, G:0.00, T:0.70
Consensus pattern (14 bp):
TTTCTTTCTCTTTC
Found at i:112163 original size:51 final size:51
Alignment explanation
Indices: 112098--112235 Score: 204
Period size: 51 Copynumber: 2.7 Consensus size: 51
112088 TATTTTGGAG
*
112098 ATAAAAATGGGGTTGGAGTATCCCCGATGGTGAAAAATCGATATTTTAAAA
1 ATAAAAATGGGGTTGGAGTATCCCCGATGGTGAAAAATCGATATATTAAAA
* * *
112149 ATAAAAAAGGGGTTGGAGTATCCCCGATGGTGAAAAGTCGATATATTGAAA
1 ATAAAAATGGGGTTGGAGTATCCCCGATGGTGAAAAATCGATATATTAAAA
* * * *
112200 ACAAAATTGGGGTTAGAGTATCCCTGATGGTGAAAA
1 ATAAAAATGGGGTTGGAGTATCCCCGATGGTGAAAA
112236 TGGGGTTGGA
Statistics
Matches: 78, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 78 1.00
ACGTcount: A:0.38, C:0.10, G:0.26, T:0.25
Consensus pattern (51 bp):
ATAAAAATGGGGTTGGAGTATCCCCGATGGTGAAAAATCGATATATTAAAA
Found at i:112247 original size:29 final size:30
Alignment explanation
Indices: 112202--112266 Score: 96
Period size: 29 Copynumber: 2.2 Consensus size: 30
112192 TATTGAAAAC
*
112202 AAAATTGGGGTTAGAGTATCCCTGATGGT-G
1 AAAA-TGGGGTTAGAGTATCCCCGATGGTGG
*
112232 AAAATGGGGTTGGAGTATCCCCGATGGTGG
1 AAAATGGGGTTAGAGTATCCCCGATGGTGG
112262 AAAAT
1 AAAAT
112267 CGATGTTTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
29 22 0.69
30 10 0.31
ACGTcount: A:0.29, C:0.11, G:0.34, T:0.26
Consensus pattern (30 bp):
AAAATGGGGTTAGAGTATCCCCGATGGTGG
Found at i:112294 original size:80 final size:80
Alignment explanation
Indices: 112153--112411 Score: 253
Period size: 79 Copynumber: 3.3 Consensus size: 80
112143 TTAAAAATAA
* * ***
112153 AAAAGGGGTTGGAGTATCCCCGATGGT-GAAAAGTCGATATATT-GAAAACAAAATTGGGGTTAG
1 AAAAGGGGTTGGAGTATCCCCGATGGTGGAAAA-TCGATATTTTAG-AAATAAAATCAAGGTTAG
***
112216 AGTAT-CCCT-GATGGT
64 AGTATCCCCTCGAAAAT
*
112231 GAAAATGGGGTTGGAGTATCCCCGATGGTGGAAAATCGATGTTTTAGAAATAAAATCAAGGTTAG
1 -AAAA-GGGGTTGGAGTATCCCCGATGGTGGAAAATCGATATTTTAGAAATAAAATCAAGGTTAG
112296 AGTATCCCCTCGAAAAT
64 AGTATCCCCTCGAAAAT
* * * * * *
112313 AACA-GGGTTAGAGTATCCCCGATGGTGAAAAATTGATATTTTAGAAATAAAATC-GGGATTAAA
1 AAAAGGGGTTGGAGTATCCCCGATGGTGGAAAATCGATATTTTAGAAATAAAATCAAGG-TTAGA
* * *
112376 ATATCCCCTTGGAAAT
65 GTATCCCCTCGAAAAT
*
112392 -AACGGGGTTGGAGTATCCCC
1 AAAAGGGGTTGGAGTATCCCC
112412 TCGGAATTGA
Statistics
Matches: 151, Mismatches: 22, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
78 3 0.02
79 82 0.54
80 50 0.33
81 13 0.09
82 3 0.02
ACGTcount: A:0.35, C:0.14, G:0.26, T:0.26
Consensus pattern (80 bp):
AAAAGGGGTTGGAGTATCCCCGATGGTGGAAAATCGATATTTTAGAAATAAAATCAAGGTTAGAG
TATCCCCTCGAAAAT
Found at i:112436 original size:28 final size:28
Alignment explanation
Indices: 112374--112437 Score: 74
Period size: 28 Copynumber: 2.3 Consensus size: 28
112364 ATCGGGATTA
*
112374 AAATATCCCCTTGGAAATAACGGGGTTG
1 AAATATCCCCTCGGAAATAACGGGGTTG
* * * * *
112402 GAGTATCCCCTCGGAATTGATGGGGTTG
1 AAATATCCCCTCGGAAATAACGGGGTTG
112430 AAATATCC
1 AAATATCC
112438 TCGAGATGAA
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.27
Consensus pattern (28 bp):
AAATATCCCCTCGGAAATAACGGGGTTG
Found at i:112607 original size:78 final size:78
Alignment explanation
Indices: 112392--112608 Score: 193
Period size: 78 Copynumber: 2.8 Consensus size: 78
112382 CCTTGGAAAT
* * * * * * * *
112392 AACGGGGTTGGAGTATCCCCTCGGAATTGATGGGGTTGAAATATCCTCGAGATGAAAATTTTAAT
1 AACGGGGTTGGAGTATCCCCTCGAAAATGATAGGGTTGGAATATCCCCAAGATGAAAA-ATCAAT
*
112457 ATTTTTGAAATAAA
65 ATTTTGGAAATAAA
* ** * ** * * * * *
112471 AATGGGGTTAAAGTAT-CTCTAAAAAATAATAGGGTTAGAATATCCCCAAAATAAAAAAATCGAT
1 AACGGGGTTGGAGTATCCCCTCGAAAATGATAGGGTTGGAATATCCCCAAGAT-GAAAAATCAAT
*
112535 ATTTTGGAAGTAAA
65 ATTTTGGAAATAAA
* * *
112549 AACGGGGTTGGAGTATCCCCTCGAAAGTGATTGGGTTGGAGTATCCCCAAGATGAAAAAT
1 AACGGGGTTGGAGTATCCCCTCGAAAATGATAGGGTTGGAATATCCCCAAGATGAAAAAT
112609 TTAGAAATTT
Statistics
Matches: 102, Mismatches: 34, Indels: 5
0.72 0.24 0.04
Matches are distributed among these distances:
78 58 0.57
79 44 0.43
ACGTcount: A:0.37, C:0.12, G:0.23, T:0.28
Consensus pattern (78 bp):
AACGGGGTTGGAGTATCCCCTCGAAAATGATAGGGTTGGAATATCCCCAAGATGAAAAATCAATA
TTTTGGAAATAAA
Found at i:115860 original size:77 final size:78
Alignment explanation
Indices: 115717--115865 Score: 198
Period size: 77 Copynumber: 1.9 Consensus size: 78
115707 AATGAAATAG
115717 GTCCTGCTCCTTGAGGACAAAAGAAAAAAAGAAAAAGGAAAGTGTCCTACTCCTTGAAGACAAAG
1 GTCCTGCTCCTTGAGGACAAAAGAAAAAAAGAAAAAGGAAAGTGTCCTACTCCTTGAAGACAAAG
115782 GGAAAAGGAGTAC
66 GGAAAAGGAGTAC
* * * * *
115795 GTCCTGCT-CTTCGAGGAC-AAAGGAAAAAAG-GAAATG-AAGTGCATCCTATTCTTTGAAGACA
1 GTCCTGCTCCTT-GAGGACAAAAGAAAAAAAGAAAAAGGAAAGTG--TCCTACTCCTTGAAGACA
115856 AAGGGAAAAG
63 AAGGGAAAAG
115866 AAGGAAATGA
Statistics
Matches: 63, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
75 5 0.08
76 4 0.06
77 40 0.63
78 14 0.22
ACGTcount: A:0.42, C:0.16, G:0.25, T:0.17
Consensus pattern (78 bp):
GTCCTGCTCCTTGAGGACAAAAGAAAAAAAGAAAAAGGAAAGTGTCCTACTCCTTGAAGACAAAG
GGAAAAGGAGTAC
Found at i:115953 original size:41 final size:42
Alignment explanation
Indices: 115794--116167 Score: 306
Period size: 42 Copynumber: 8.9 Consensus size: 42
115784 AAAAGGAGTA
* *
115794 CGTCCTGCTCTTCGAGGACAAAGGAAAAAAGGAAATGAAGTG
1 CGTCCTGCTCTTCGAGGACAAAGGAGAAAAGGAAATAAAGTG
* ** * * * *
115836 CATCCTATTCTTTGAAGACAAAGGGAAAAGAAGGAAATGAAGTG
1 CGTCCTGCTCTTCGAGGACAAA-GGAGAA-AAGGAAATAAAGTG
** ** * * * * *
115880 TTTCCTATTTTTTTGAGGATAAA-AAGAAAAAGAAATAAAGTG
1 CGTCCT-GCTCTTCGAGGACAAAGGAGAAAAGGAAATAAAGTG
* * * *
115922 CATCCTGCCCTTCAAGGACAAAGAAGAAAA-GAAATAAAGTG
1 CGTCCTGCTCTTCGAGGACAAAGGAGAAAAGGAAATAAAGTG
* *
115963 TGTCCTACTCTAT-GAGGACAAAGGAGAAAAGGAAATAAAGTG
1 CGTCCTGCTCT-TCGAGGACAAAGGAGAAAAGGAAATAAAGTG
* * * *
116005 TGTCCTGTTCTTCGAGGACAAAGGAG-AAAGAAAATAAAATG
1 CGTCCTGCTCTTCGAGGACAAAGGAGAAAAGGAAATAAAGTG
* * * *
116046 CATCCTGCTTTTTGAGGATAAAGGAGAAAAGGAAATAAAGTG
1 CGTCCTGCTCTTCGAGGACAAAGGAGAAAAGGAAATAAAGTG
* *
116088 CGTTCTGCTCTTTGAGGACAAAGGAGAAAAGGAAATAAAGTGTG
1 CGTCCTGCTCTTCGAGGACAAAGGAGAAAAGGAAATAAA--GTG
* * * * * *
116132 TGTCCTACTTTTTGAGGACAAATGAGAAAAAGAAAT
1 CGTCCTGCTCTTCGAGGACAAAGGAGAAAAGGAAAT
116168 GCATCCTGTT
Statistics
Matches: 270, Mismatches: 52, Indels: 18
0.79 0.15 0.05
Matches are distributed among these distances:
41 76 0.28
42 122 0.45
43 9 0.03
44 51 0.19
45 12 0.04
ACGTcount: A:0.42, C:0.12, G:0.24, T:0.22
Consensus pattern (42 bp):
CGTCCTGCTCTTCGAGGACAAAGGAGAAAAGGAAATAAAGTG
Found at i:115985 original size:169 final size:168
Alignment explanation
Indices: 115807--116168 Score: 410
Period size: 169 Copynumber: 2.1 Consensus size: 168
115797 CCTGCTCTTC
*
115807 GAGGACAAAGGAAAAAAGGAAATGAAGTGCATCCTATTCTTTGAAGACAAAGG-GAAAAGAAGGA
1 GAGGACAAAGGAAAAAAGGAAATGAAGTGCATCCTATTCTTCGAAGACAAAGGAG-AAAG-A--A
* * ** **
115871 AATGAAGTGTTTCCTATTTTTTTGAGGATAAA-AAGAAAAAGAAATAAAGTGCATCCTGCCCTTC
62 AATAAAATGCATCCT-GCTTTTTGAGGATAAAGAAGAAAAAGAAATAAAGTGCATCCTGCCCTTC
115935 AAGGACAAAGAAGAAAA-GAAATAAA-GTGTGTCCTACTCTAT
126 AAGGACAAAGAAGAAAAGGAAATAAAGGTGTGTCCTACTCTAT
* * ** * *
115976 GAGGACAAAGGAGAAAAGGAAATAAAGTGTGTCCTGTTCTTCGAGGACAAAGGAGAAAGAAAATA
1 GAGGACAAAGGAAAAAAGGAAATGAAGTGCATCCTATTCTTCGAAGACAAAGGAGAAAGAAAATA
* * * * * **
116041 AAATGCATCCTGCTTTTTGAGGATAAAGGAGAAAAGGAAATAAAGTGCGTTCTGCTCTTTGAGGA
66 AAATGCATCCTGCTTTTTGAGGATAAAGAAGAAAAAGAAATAAAGTGCATCCTGCCCTTCAAGGA
* * *
116106 CAAAGGAGAAAAGGAAATAAAGTGTGTGTCCTACTTTTT
131 CAAAGAAGAAAAGGAAATAAAG-GTGTGTCCTACTCTAT
*
116145 GAGGACAAATGAGAAAAA-GAAATG
1 GAGGACAAAGGA-AAAAAGGAAATG
116169 CATCCTGTTT
Statistics
Matches: 161, Mismatches: 26, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
165 14 0.09
166 53 0.33
167 8 0.05
168 1 0.01
169 80 0.50
170 5 0.03
ACGTcount: A:0.43, C:0.11, G:0.25, T:0.22
Consensus pattern (168 bp):
GAGGACAAAGGAAAAAAGGAAATGAAGTGCATCCTATTCTTCGAAGACAAAGGAGAAAGAAAATA
AAATGCATCCTGCTTTTTGAGGATAAAGAAGAAAAAGAAATAAAGTGCATCCTGCCCTTCAAGGA
CAAAGAAGAAAAGGAAATAAAGGTGTGTCCTACTCTAT
Found at i:115998 original size:83 final size:84
Alignment explanation
Indices: 115807--116167 Score: 318
Period size: 83 Copynumber: 4.3 Consensus size: 84
115797 CCTGCTCTTC
* * ** * *
115807 GAGGACAAAGGAAAAAAGGAAATGAAGTGCATCCTATTCTTTGAA-GACAAAGGGAA-AAGAAGG
1 GAGGACAAAGGAGAAAAGGAAATAAAGTGCATCCT-GCCCTTCAAGGACAAA--GAAGAA-AAGG
* * *
115870 AAATGAAGTGTTTCCTATTTTTTT
62 AAATAAAGTGTGTCCTA-CTTTTT
* * *
115894 GAGGATAAA-AAGAAAAAGAAATAAAGTGCATCCTGCCCTTCAAGGACAAAGAAGAAAA-GAAAT
1 GAGGACAAAGGAGAAAAGGAAATAAAGTGCATCCTGCCCTTCAAGGACAAAGAAGAAAAGGAAAT
* *
115957 AAAGTGTGTCCTACTCTAT
66 AAAGTGTGTCCTACTTTTT
** ** * * *
115976 GAGGACAAAGGAGAAAAGGAAATAAAGTGTGTCCTGTTCTTCGAGGACAAAGGAG-AAAGAAAAT
1 GAGGACAAAGGAGAAAAGGAAATAAAGTGCATCCTGCCCTTCAAGGACAAAGAAGAAAAGGAAAT
* ** *
116040 AAAATGCATCCTGCTTTTT
66 AAAGTGTGTCCTACTTTTT
* * * * ** *
116059 GAGGATAAAGGAGAAAAGGAAATAAAGTGCGTTCTGCTCTTTGAGGACAAAGGAGAAAAGGAAAT
1 GAGGACAAAGGAGAAAAGGAAATAAAGTGCATCCTGCCCTTCAAGGACAAAGAAGAAAAGGAAAT
116124 AAAGTGTGTGTCCTACTTTTT
66 AAA--GTGTGTCCTACTTTTT
* *
116145 GAGGACAAATGAGAAAAAGAAAT
1 GAGGACAAAGGAGAAAAGGAAAT
116168 GCATCCTGTT
Statistics
Matches: 224, Mismatches: 43, Indels: 15
0.79 0.15 0.05
Matches are distributed among these distances:
82 14 0.06
83 120 0.54
84 16 0.07
85 7 0.03
86 59 0.26
87 8 0.04
ACGTcount: A:0.43, C:0.11, G:0.24, T:0.22
Consensus pattern (84 bp):
GAGGACAAAGGAGAAAAGGAAATAAAGTGCATCCTGCCCTTCAAGGACAAAGAAGAAAAGGAAAT
AAAGTGTGTCCTACTTTTT
Found at i:116307 original size:62 final size:61
Alignment explanation
Indices: 116179--117472 Score: 1160
Period size: 62 Copynumber: 21.3 Consensus size: 61
116169 CATCCTGTTT
* * * * * * *
116179 TTTGAGGATTAAAGGGTACCACCAATTCGTGAGGGCTTT----GAAAAAAGGCATCTTGCTC
1 TTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAGAAAAAA-GCATCCTACTC
* * *
116237 TTTAAGGACTAAAAGGTGCCACCAACTCCTGTAGGCTTTGAAAAGAAAAAAGCATCCTACTC
1 TTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTT-AAAAGAAAAAAGCATCCTACTC
* *** * **
116299 TTTGAGGACTAAAGGGTGTTGCCAACTCGTGTGGGCTTTGAAAAGAAAAAGGTGTCCTACTC
1 TTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTT-AAAAGAAAAAAGCATCCTACTC
* * * * **
116361 TTTGAGGACTGAAGGGTGCCACCAACTCATGTGGGCTTTAAAA-AAAAAGGTGTCCTACTC
1 TTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAGAAAAAAGCATCCTACTC
* * * * * * * **
116421 TTTGAGGACT-AAAGAGTGGCAGCAACTCATGCGGGCTTT--TA-AAAAAGGCATCTTGTTC
1 TTTGAGGACTAAAAG-GTGCCACCAACTCGTGTGGGCTTTAAAAGAAAAAAGCATCCTACTC
* * * * ** *
116479 TTTGAGGACT-AAAGAGTACCACCAACTCGTGTGAGCTTT---TG-AAAAAGACATCTTGTTT
1 TTTGAGGACTAAAAG-GTGCCACCAACTCGTGTGGGCTTTAAAAGAAAAAAG-CATCCTACTC
* * * *
116537 TTTAAGGACTAAAGGGTGCCACCAACTCATGTGGGCTTTAAAAGAAAAAAG-AGTCTTACTC
1 TTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAGAAAAAAGCA-TCCTACTC
* * * * * * * * *
116598 TTTGAGGAATAAATGGTGCTACCAACTCATATGGGCTTTAAAAAGAAAAAGGCGTCTTACAC
1 TTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTT-AAAAGAAAAAAGCATCCTACTC
* * * *
116660 TTTAAGGACTAAAAGGTGCCACCAACTCGTATGGGTTTTAAAAGAAAAAGGCATCCTACTC
1 TTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAGAAAAAAGCATCCTACTC
* *
116721 TTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAAAAGCATCTTGCTC
1 TTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTT-AAAAG-AAAAAAGCATCCTACTC
* * *
116784 TTTGAGGACTAAAAGGTGCCACCAACTCGTGTGAGCTTTAAAAGAAAAAAAACGTCCTACTC
1 TTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAG-AAAAAAGCATCCTACTC
* * * * *** * * *
116846 TTTGAGGACTAAAAGGTGTCACTAACTCCTATTATCTTTAAAAGGAAAAAGGCTTTCTACTC
1 TTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAA-GAAAAAAGCATCCTACTC
* ** * *
116908 TTTGAGGACTAAAAGGTACCACCAACTCGTGTAAGCTTTAAAAGAAAAAGGCATCCTGCTC
1 TTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAGAAAAAAGCATCCTACTC
* * * * ** *
116969 TTTGAGGACTAAAGGGTGCCACCAACTTGTGTGAGCTTTAAAAAGAAAAAGGTGTCCTGCTC
1 TTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTT-AAAAGAAAAAAGCATCCTACTC
* * * ** * * ** * *
117031 TTTGAGGACTAAATA-CTGCCACTAACGCGTGTTAGCTTT--TA-AAAAAGGTGTCTTGCTC
1 TTTGAGGACTAAA-AGGTGCCACCAACTCGTGTGGGCTTTAAAAGAAAAAAGCATCCTACTC
* * *
117089 TTTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTAAAAGAAAAAAGGCATCTTATTC
1 TTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAGAAAAAA-GCATCCTACTC
* * * *
117151 TTTGAGGACTTAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAAGGCGTCTTACTC
1 TTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTT-AAAAGAAAAAAGCATCCTACTC
* * *
117213 TTTGAGGACTAAAAGGTGCCACCAACTCGTATGGGCTTTAAAAG-GAAAAGACATCCCACTC
1 TTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAGAAAAAAG-CATCCTACTC
* * * *
117274 -TTAATGGACTAAAATGTGCCACCAACTCGTGTGGGCTTTAAAA-AGAAAAAGACATCTTGCTC
1 TTTGA-GGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAGA-AAAAAG-CATCCTACTC
* * * * * *
117336 TTTGAGGACTAAAAAGTACCACCAACTAGTGTGGGCTTTAAAAGAAAAAAAGCGTCATGCTC
1 TTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAG-AAAAAAGCATCCTACTC
* ** *
117398 TTTGAGGACAAAAAGGTGCCACCAACTCGTGTAAGCTTT-AAA-AAAAAAGCTTCCTACTC
1 TTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAGAAAAAAGCATCCTACTC
*
117457 TTTGAGGATTAAAAGG
1 TTTGAGGACTAAAAGG
117473 ATAAAAAGGG
Statistics
Matches: 1039, Mismatches: 163, Indels: 67
0.82 0.13 0.05
Matches are distributed among these distances:
57 5 0.00
58 164 0.16
59 35 0.03
60 57 0.05
61 205 0.20
62 493 0.47
63 79 0.08
64 1 0.00
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.26
Consensus pattern (61 bp):
TTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAGAAAAAAGCATCCTACTC
Found at i:116681 original size:123 final size:122
Alignment explanation
Indices: 116179--117472 Score: 1189
Period size: 123 Copynumber: 10.6 Consensus size: 122
116169 CATCCTGTTT
* * * * * * *
116179 TTTGAGGATTAAAGGGTACCACCAATTCGTGAGGGCTTT--GA-AAAAAGGCA-TCTTGCTCTTT
1 TTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAGAAAAAGG-AGTCTTACTCTTT
* * * * *
116240 AAGGACTAAAAGGTGCCACCAACTCCTGTAGGCTTTGAAAAGAAAAAAGCATCCTACTC
65 GAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTT-AAAAGAAAAAGGCATCTTACTC
* *** * *
116299 TTTGAGGACTAAAGGGTGTTGCCAACTCGTGTGGGCTTTGAAAAGAAAAAGGTGTCCTACTCTTT
1 TTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTT-AAAAGAAAAAGGAGTCTTACTCTTT
* * * ** *
116364 GAGGACTGAAGGGTGCCACCAACTCATGTGGGCTTTAAAA-AAAAAGGTGTCCTACTC
65 GAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAGAAAAAGGCATCTTACTC
* * * * * **
116421 TTTGAGGACT-AAAGAGTGGCAGCAACTCATGCGGGCTTT--TA-AAAAAGGCA-TCTTGTTCTT
1 TTTGAGGACTAAAAG-GTGCCACCAACTCGTGTGGGCTTTAAAAGAAAAAGG-AGTCTTACTCTT
* * * * ** *
116481 TGAGGACT-AAAGAGTACCACCAACTCGTGTGAGCTTT---TGAAAAAGACATCTTGTTT
64 TGAGGACTAAAAG-GTGCCACCAACTCGTGTGGGCTTTAAAAGAAAAAGGCATCTTACTC
* * * *
116537 TTTAAGGACTAAAGGGTGCCACCAACTCATGTGGGCTTTAAAAGAAAAAAGAGTCTTACTCTTTG
1 TTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAGAAAAAGGAGTCTTACTCTTTG
* * * * * * *
116602 AGGAATAAATGGTGCTACCAACTCATATGGGCTTTAAAAAGAAAAAGGCGTCTTACAC
66 AGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTT-AAAAGAAAAAGGCATCTTACTC
* * * *
116660 TTTAAGGACTAAAAGGTGCCACCAACTCGTATGGGTTTTAAAAGAAAAAGGCA-TCCTACTCTTT
1 TTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAGAAAAAGG-AGTCTTACTCTTT
* *
116724 GAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAAAAGCATCTTGCTC
65 GAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTT-AAAAG-AAAAAGGCATCTTACTC
* ** *
116784 TTTGAGGACTAAAAGGTGCCACCAACTCGTGTGAGCTTTAAAAGAAAAAAAACGTCCTACTCTTT
1 TTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAGAAAAAGGA-GTCTTACTCTTT
* * * * *** *
116849 GAGGACTAAAAGGTGTCACTAACTCCTATTATCTTTAAAAGGAAAAAGGC-TTTCTACTC
65 GAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAA-GAAAAAGGCATCT-TACTC
* ** * *
116908 TTTGAGGACTAAAAGGTACCACCAACTCGTGTAAGCTTTAAAAGAAAAAGGCA-TCCTGCTCTTT
1 TTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAGAAAAAGG-AGTCTTACTCTTT
* * * ** * *
116972 GAGGACTAAAGGGTGCCACCAACTTGTGTGAGCTTTAAAAAGAAAAAGGTGTCCTGCTC
65 GAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTT-AAAAGAAAAAGGCATCTTACTC
* * * ** * * *
117031 TTTGAGGACTAAATA-CTGCCACTAACGCGTGTTAGCTTT--TA-AAAAAGGTGTCTTGCTCTTT
1 TTTGAGGACTAAA-AGGTGCCACCAACTCGTGTGGGCTTTAAAAGAAAAAGGAGTCTTACTCTTT
* *
117092 GAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTAAAAGAAAAAAGGCATCTTATTC
65 GAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAG-AAAAAGGCATCTTACTC
* *
117151 TTTGAGGACTTAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAAGGCGTCTTACTCTTT
1 TTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTT-AAAAGAAAAAGGAGTCTTACTCTTT
* * * **
117216 GAGGACTAAAAGGTGCCACCAACTCGTATGGGCTTTAAAAGGAAAAGACATCCCACTC
65 GAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAGAAAAAGGCATCTTACTC
* * * *
117274 -TTAATGGACTAAAATGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAA-GACATCTTGCTCT
1 TTTGA-GGACTAAAAGGTGCCACCAACTCGTGTGGGCTTT-AAAAGAAAAAGGA-GTCTTACTCT
* * * * * * *
117337 TTGAGGACTAAAAAGTACCACCAACTAGTGTGGGCTTTAAAAGAAAAAAAGCGTCATGCTC
63 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAG-AAAAAGGCATCTTACTC
* ** ** *
117398 TTTGAGGACAAAAAGGTGCCACCAACTCGTGTAAGCTTTAAAA-AAAAA-GCTTCCTACTCTTTG
1 TTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAGAAAAAGGAGTCTTACTCTTTG
*
117461 AGGATTAAAAGG
66 AGGACTAAAAGG
117473 ATAAAAAGGG
Statistics
Matches: 961, Mismatches: 173, Indels: 79
0.79 0.14 0.07
Matches are distributed among these distances:
116 40 0.04
117 6 0.01
118 45 0.05
119 47 0.05
120 129 0.13
121 24 0.02
122 52 0.05
123 302 0.31
124 271 0.28
125 45 0.05
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.26
Consensus pattern (122 bp):
TTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAGAAAAAGGAGTCTTACTCTTTG
AGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAGAAAAAGGCATCTTACTC
Found at i:117007 original size:185 final size:184
Alignment explanation
Indices: 116179--117472 Score: 1297
Period size: 185 Copynumber: 7.1 Consensus size: 184
116169 CATCCTGTTT
* * * * * * *
116179 TTTGAGGATTAAAGGGTACCACCAATTCGTGAGGGCTTT--GA-AAAAAGGCATCTTGCTCTTTA
1 TTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAGAAAAAGGCATCTTGCTCTTTG
* * * * *
116241 AGGACTAAAAGGTGCCACCAACTCCTGTAGGCTTTGAAAAGAAAAAAGCATCCTACTCTTTGAGG
66 AGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAAGGCGTCCTACTCTTTGAGG
* *** * *
116306 ACTAAAGGGTGTTGCCAACTCGTGTGGGCTTTGAAAAGAAAAAGG-TGTCCTACTC
131 ACTAAAAGGTGCCACCAACTCGTATGAGCTTT-AAAAGAAAAAGGCT-TCCTACTC
* * * ** * *
116361 TTTGAGGACTGAAGGGTGCCACCAACTCATGTGGGCTTTAAAA-AAAAAGGTGTCCTACTCTTTG
1 TTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAGAAAAAGGCATCTTGCTCTTTG
* * * * * * * **
116425 AGGACT-AAAGAGTGGCAGCAACTCATGCGGGCTTT---TA-AAAAAGGCATCTTGTTCTTTGAG
66 AGGACTAAAAG-GTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAAGGCGTCCTACTCTTTGAG
* * * * * * ** *
116485 GACT-AAAGAGTACCACCAACTCGTGTGAGCTTT---TGAAAAAGACATCTTGTTT
130 GACTAAAAG-GTGCCACCAACTCGTATGAGCTTTAAAAGAAAAAGGCTTCCTACTC
* * * * *
116537 TTTAAGGACTAAAGGGTGCCACCAACTCATGTGGGCTTTAAAAGAAAAAAG-AGTCTTACTCTTT
1 TTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAGAAAAAGGCA-TCTTGCTCTTT
* * * * * * * *
116601 GAGGAATAAATGGTGCTACCAACTCATATGGGCTTTAAAAAGAAAAAGGCGTCTTACACTTTAAG
65 GAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAAGGCGTCCTACTCTTTGAG
* * *
116666 GACTAAAAGGTGCCACCAACTCGTATGGGTTTTAAAAGAAAAAGGCATCCTACTC
130 GACTAAAAGGTGCCACCAACTCGTATGAGCTTTAAAAGAAAAAGGCTTCCTACTC
*
116721 TTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAAAAGCATCTTGCTCTT
1 TTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTT-AAAAG-AAAAAGGCATCTTGCTCTT
* **
116786 TGAGGACTAAAAGGTGCCACCAACTCGTGTGAGCTTT-AAAAGAAAAAAAACGTCCTACTCTTTG
64 TGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAAG-AAAAAGGCGTCCTACTCTTTG
* * * * * *
116850 AGGACTAAAAGGTGTCACTAACTCCTATTATCTTTAAAAGGAAAAAGGCTTTCTACTC
128 AGGACTAAAAGGTGCCACCAACTCGTATGAGCTTTAAAA-GAAAAAGGCTTCCTACTC
* ** *
116908 TTTGAGGACTAAAAGGTACCACCAACTCGTGTAAGCTTTAAAAGAAAAAGGCATCCTGCTCTTTG
1 TTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAGAAAAAGGCATCTTGCTCTTTG
* * * * *
116973 AGGACTAAAGGGTGCCACCAACTTGTGTGAGCTTTAAAAAGAAAAAGGTGTCCTGCTCTTTGAGG
66 AGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAAGGCGTCCTACTCTTTGAGG
* * * * * * * *
117038 ACTAAATA-CTGCCACTAACGCGTGTTAGCTTT--TA-AAAAAGG-TGTCTTGCTC
131 ACTAAA-AGGTGCCACCAACTCGTATGAGCTTTAAAAGAAAAAGGCT-TCCTACTC
* **
117089 TTTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTAAAAGAAAAAAGGCATCTTATTCTTT
1 TTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAG-AAAAAGGCATCTTGCTCTTT
* *
117154 GAGGACTTAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAAGGCGTCTTACTCTTTGAG
65 GAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAAGGCGTCCTACTCTTTGAG
* * * * *
117219 GACTAAAAGGTGCCACCAACTCGTATGGGCTTTAAAAGGAAAAGACATCCCACTC
130 GACTAAAAGGTGCCACCAACTCGTATGAGCTTTAAAAGAAAAAGGCTTCCTACTC
* * *
117274 -TTAATGGACTAAAATGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAAGACATCTTGCTCTT
1 TTTGA-GGACTAAAAGGTGCCACCAACTCGTGTGGGCTTT-AAAAGAAAAAGGCATCTTGCTCTT
* * * * * *
117338 TGAGGACTAAAAAGTACCACCAACTAGTGTGGGCTTT-AAAAGAAAAAAAGCGTCATGCTCTTTG
64 TGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAAG-AAAAAGGCGTCCTACTCTTTG
* * *
117402 AGGACAAAAAGGTGCCACCAACTCGTGTAAGCTTTAAAA-AAAAA-GCTTCCTACTC
128 AGGACTAAAAGGTGCCACCAACTCGTATGAGCTTTAAAAGAAAAAGGCTTCCTACTC
*
117457 TTTGAGGATTAAAAGG
1 TTTGAGGACTAAAAGG
117473 ATAAAAAGGG
Statistics
Matches: 919, Mismatches: 159, Indels: 67
0.80 0.14 0.06
Matches are distributed among these distances:
176 52 0.06
177 41 0.04
178 3 0.00
179 3 0.00
180 44 0.05
181 96 0.10
182 137 0.15
183 22 0.02
184 107 0.12
185 250 0.27
186 111 0.12
187 53 0.06
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.26
Consensus pattern (184 bp):
TTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAGAAAAAGGCATCTTGCTCTTTG
AGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAAGGCGTCCTACTCTTTGAGG
ACTAAAAGGTGCCACCAACTCGTATGAGCTTTAAAAGAAAAAGGCTTCCTACTC
Found at i:117576 original size:62 final size:64
Alignment explanation
Indices: 117483--117693 Score: 216
Period size: 64 Copynumber: 3.4 Consensus size: 64
117473 ATAAAAAGGG
* * * * *
117483 TGCCACGAAGTCATGAATTTTG-A-AAAGAGATGTCACTAAGTCGTGGACTTTG-A-AAAGAGA
1 TGCCACAAAGTCATGAACTTTGAAGAAAGAGATGCCACTGAGTCATGGACTTTGAAGAAAGAGA
* * * **
117543 TGCCCCAAAGTTATGGACTTTGAAGAAAGAGATGCCACTGAGTTTTGGACTTTGAAGAAAGAGA
1 TGCCACAAAGTCATGAACTTTGAAGAAAGAGATGCCACTGAGTCATGGACTTTGAAGAAAGAGA
*** * *
117607 TGCCATTGAGTCGTGAACTTTGAAGAAATAGATGCCACTGAGTCATGGAC-TTGAAGAAAGAGA
1 TGCCACAAAGTCATGAACTTTGAAGAAAGAGATGCCACTGAGTCATGGACTTTGAAGAAAGAGA
*** *
117670 TGCCATTGAGTCATGGACTTTGAA
1 TGCCACAAAGTCATGAACTTTGAA
117694 AAGGTTGCTT
Statistics
Matches: 126, Mismatches: 21, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
60 17 0.13
61 1 0.01
62 25 0.20
63 36 0.29
64 47 0.37
ACGTcount: A:0.34, C:0.14, G:0.26, T:0.26
Consensus pattern (64 bp):
TGCCACAAAGTCATGAACTTTGAAGAAAGAGATGCCACTGAGTCATGGACTTTGAAGAAAGAGA
Found at i:117577 original size:32 final size:32
Alignment explanation
Indices: 117506--117693 Score: 229
Period size: 32 Copynumber: 6.0 Consensus size: 32
117496 TGAATTTTGA
* * *
117506 AAAGAGATGTCACTAAGTCGTGGACTTTG-A-
1 AAAGAGATGCCACTGAGTCATGGACTTTGAAG
* ** *
117536 AAAGAGATGCCCCAAAGTTATGGACTTTGAAG
1 AAAGAGATGCCACTGAGTCATGGACTTTGAAG
**
117568 AAAGAGATGCCACTGAGTTTTGGACTTTGAAG
1 AAAGAGATGCCACTGAGTCATGGACTTTGAAG
* * *
117600 AAAGAGATGCCATTGAGTCGTGAACTTTGAAG
1 AAAGAGATGCCACTGAGTCATGGACTTTGAAG
*
117632 AAATAGATGCCACTGAGTCATGGAC-TTGAAG
1 AAAGAGATGCCACTGAGTCATGGACTTTGAAG
*
117663 AAAGAGATGCCATTGAGTCATGGACTTTGAA
1 AAAGAGATGCCACTGAGTCATGGACTTTGAA
117694 AAGGTTGCTT
Statistics
Matches: 136, Mismatches: 19, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
30 24 0.18
31 30 0.22
32 82 0.60
ACGTcount: A:0.35, C:0.14, G:0.27, T:0.25
Consensus pattern (32 bp):
AAAGAGATGCCACTGAGTCATGGACTTTGAAG
Done.