Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold407
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4418299
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 127125 characters in sequence are not A, C, G, or T
File 13 of 28
Found at i:1806804 original size:49 final size:49
Alignment explanation
Indices: 1806535--1806919 Score: 418
Period size: 49 Copynumber: 8.0 Consensus size: 49
1806525 GTTGAAAATG
*
1806535 AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAAGATGACA
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTT-AAAG--G-TA
* * *
1806588 AAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGGCA
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTT-AA-A-GGTA
* * *
1806640 AAGGCGCCAATATGCTGATTCAAGGCCAGTGATATTGGAC-T-----TA
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGGTA
* * *
1806683 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGGTA
* **
1806731 GAGGTGCCAATATGCTGATTCAAGGCCAGTTACATTGGACTTAAAGGTA
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGGTA
*
1806780 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC-T-----TA
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGGTA
* * * *
1806823 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGGTA
* * *
1806872 AAGGTGCCAATATGCTGATTCAAGGCTAGCGATATTGGGCTTAGAAGG
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTA-AAGG
1806920 GTTGCCACCG
Statistics
Matches: 289, Mismatches: 27, Indels: 35
0.82 0.08 0.10
Matches are distributed among these distances:
43 75 0.26
44 2 0.01
48 45 0.16
49 76 0.26
50 3 0.01
51 1 0.00
52 41 0.14
53 44 0.15
54 1 0.00
55 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.24
Consensus pattern (49 bp):
AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGGTA
Found at i:1806823 original size:140 final size:144
Alignment explanation
Indices: 1806535--1806914 Score: 588
Period size: 140 Copynumber: 2.6 Consensus size: 144
1806525 GTTGAAAATG
* * *
1806535 AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAAGATGACAAAGGCGCCAATA
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT-AAAGATG---AAGGTGCCAATA
*
1806600 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGGCAAAGGCGCCAATATGCTGATTCAAGG
62 TGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGGCAAAGGCGCCAATATGCTGATTCAAGG
*
1806665 CCAGTGATATTGGACTTA
127 CCAGCGATATTGGACTTA
1806683 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG-AGGTGCCAATATGCT
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCT
** * *
1806747 GATTCAAGGCCAGTTACATTGGACTT-AA-A-GGTAAAGGTGCCAATATGCTGATTCAAGGCCAG
66 GATTCAAGGCCAGCGACATTGGACTTAAAGATGGCAAAGGCGCCAATATGCTGATTCAAGGCCAG
1806809 CGATATTGGACTTA
131 CGATATTGGACTTA
1806823 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCT
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCT
* * *
1806888 GATTCAAGGCTAGCGATATTGGGCTTA
66 GATTCAAGGCCAGCGACATTGGACTTA
1806915 GAAGGGTTGC
Statistics
Matches: 216, Mismatches: 14, Indels: 10
0.90 0.06 0.04
Matches are distributed among these distances:
140 93 0.43
141 37 0.17
142 2 0.01
143 37 0.17
147 7 0.03
148 40 0.19
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.24
Consensus pattern (144 bp):
AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCT
GATTCAAGGCCAGCGACATTGGACTTAAAGATGGCAAAGGCGCCAATATGCTGATTCAAGGCCAG
CGATATTGGACTTA
Found at i:1806955 original size:32 final size:32
Alignment explanation
Indices: 1806907--1807183 Score: 382
Period size: 32 Copynumber: 8.5 Consensus size: 32
1806897 CTAGCGATAT
1806907 TGGGC-TTAG-AAGGGTTGCCACCGACTTGTG
1 TGGGCTTTAGAAAGGGTTGCCACCGACTTGTG
* **
1806937 TGGGCTTTAGAGAGGGTTGCCACCGACACGTG
1 TGGGCTTTAGAAAGGGTTGCCACCGACTTGTG
* *
1806969 TGGGCTTTGGAAGAAGGTTGCCACCGACTTGTG
1 TGGGCTTTAGAA-AGGGTTGCCACCGACTTGTG
1807002 TGGGCTTTTTAGAAAAGGGTTGCCACCGACTTGTG
1 TGGGC--TTTAG-AAAGGGTTGCCACCGACTTGTG
1807037 TGGGCTTTAGAGAAGGGTTGCCACCGACTTGTG
1 TGGGCTTTAGA-AAGGGTTGCCACCGACTTGTG
*
1807070 TGGGCTTTAGAAAAAGGTTGCCACCGACTTGTG
1 TGGGCTTTAG-AAAGGGTTGCCACCGACTTGTG
*
1807103 TGGGCTTT-GAAAAAGGTTGCCACCGACTTGTG
1 TGGGCTTTAG-AAAGGGTTGCCACCGACTTGTG
*
1807135 TGGGCTTTAGAAAGGGTTGCCACCGACTTATG
1 TGGGCTTTAGAAAGGGTTGCCACCGACTTGTG
1807167 TGGGCTTT-GAGAAGGGT
1 TGGGCTTTAGA-AAGGGT
1807184 GAAAGATGCC
Statistics
Matches: 224, Mismatches: 13, Indels: 18
0.88 0.05 0.07
Matches are distributed among these distances:
30 5 0.02
31 6 0.03
32 95 0.42
33 87 0.39
34 1 0.00
35 28 0.12
36 2 0.01
ACGTcount: A:0.20, C:0.18, G:0.35, T:0.27
Consensus pattern (32 bp):
TGGGCTTTAGAAAGGGTTGCCACCGACTTGTG
Found at i:1806993 original size:33 final size:33
Alignment explanation
Indices: 1806907--1807180 Score: 375
Period size: 33 Copynumber: 8.4 Consensus size: 33
1806897 CTAGCGATAT
1806907 TGGGC-TTAGAAG--GGTTGCCACCGACTTGTG
1 TGGGCTTTAGAAGAAGGTTGCCACCGACTTGTG
* **
1806937 TGGGCTTTAG-AGAGGGTTGCCACCGACACGTG
1 TGGGCTTTAGAAGAAGGTTGCCACCGACTTGTG
*
1806969 TGGGCTTTGGAAGAAGGTTGCCACCGACTTGTG
1 TGGGCTTTAGAAGAAGGTTGCCACCGACTTGTG
1807002 TGGGCTTTTTAGAA-AAGGGTTGCCACCGACTTGTG
1 TGGGC--TTTAGAAGAA-GGTTGCCACCGACTTGTG
1807037 TGGGCTTTAG-AGAAGGGTTGCCACCGACTTGTG
1 TGGGCTTTAGAAGAA-GGTTGCCACCGACTTGTG
*
1807070 TGGGCTTTAGAAAAAGGTTGCCACCGACTTGTG
1 TGGGCTTTAGAAGAAGGTTGCCACCGACTTGTG
*
1807103 TGGGCTTT-GAAAAAGGTTGCCACCGACTTGTG
1 TGGGCTTTAGAAGAAGGTTGCCACCGACTTGTG
* *
1807135 TGGGCTTTAGAA-AGGGTTGCCACCGACTTATG
1 TGGGCTTTAGAAGAAGGTTGCCACCGACTTGTG
1807167 TGGGCTTTGAGAAG
1 TGGGCTTT-AGAAG
1807181 GGTGAAAGAT
Statistics
Matches: 222, Mismatches: 10, Indels: 20
0.88 0.04 0.08
Matches are distributed among these distances:
30 7 0.03
31 4 0.02
32 84 0.38
33 93 0.42
34 5 0.02
35 29 0.13
ACGTcount: A:0.20, C:0.18, G:0.34, T:0.27
Consensus pattern (33 bp):
TGGGCTTTAGAAGAAGGTTGCCACCGACTTGTG
Found at i:1806994 original size:65 final size:67
Alignment explanation
Indices: 1806914--1807183 Score: 403
Period size: 65 Copynumber: 4.1 Consensus size: 67
1806904 TATTGGGCTT
* **
1806914 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG-AGAGGGTTGCCACCGACACGTGTGGGCTTTG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAAAAGGGTTGCCACCGACTTGTGTGGGCTTTG
1806978 GA
66 GA
1806980 AGAA-GGTTGCCACCGACTTGTGTGGGCTTTTTAGAAAAGGGTTGCCACCGACTTGTGTGGGCTT
1 AGAAGGGTTGCCACCGACTTGTGTGGGC--TTTAGAAAAGGGTTGCCACCGACTTGTGTGGGCTT
*
1807044 TAG-
64 TGGA
*
1807047 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAAAAAGGTTGCCACCGACTTGTGTGGGCTTT-
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAAAAGGGTTGCCACCGACTTGTGTGGGCTTTG
1807111 GA
66 GA
* *
1807113 A-AAAGGTTGCCACCGACTTGTGTGGGCTTTAG-AAAGGGTTGCCACCGACTTATGTGGGCTTT-
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAAAAGGGTTGCCACCGACTTGTGTGGGCTTTG
1807175 G-
66 GA
1807176 AGAAGGGT
1 AGAAGGGT
1807184 GAAAGATGCC
Statistics
Matches: 189, Mismatches: 9, Indels: 14
0.89 0.04 0.07
Matches are distributed among these distances:
63 1 0.01
64 34 0.18
65 54 0.29
66 40 0.21
67 9 0.05
68 51 0.27
ACGTcount: A:0.20, C:0.18, G:0.34, T:0.27
Consensus pattern (67 bp):
AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAAAAGGGTTGCCACCGACTTGTGTGGGCTTTG
GA
Found at i:1807232 original size:33 final size:33
Alignment explanation
Indices: 1807190--1807892 Score: 364
Period size: 33 Copynumber: 21.7 Consensus size: 33
1807180 GGGTGAAAGA
* *
1807190 TGCCACGAAGTTGTGAACTTAAAAGGAACAAGG
1 TGCCACGGAGTTGTGGACTTAAAAGGAACAAGG
* *
1807223 TGCCACGAAGTTGTGGACTTTAAAAGGGAAAAAGAG
1 TGCCACGGAGTTGTGGAC-TTAAAA-GGAACAAG-G
* * ** *
1807259 TGGCACGGAGTTGTGGGCTTTGAA--AAGAAGG
1 TGCCACGGAGTTGTGGACTTAAAAGGAACAAGG
*
1807290 TGCCACGGAGTCGTGGACTTAAAAGGAACAAGG
1 TGCCACGGAGTTGTGGACTTAAAAGGAACAAGG
*
1807323 TGCCACGGGGTTGTGGACTTTAAAAGGGGAA-AAGAG
1 TGCCACGGAGTTGTGGAC-TTAAAA--GGAACAAG-G
* * *
1807359 TGCTATGGAGTTGTGGGCTTTAAAA-G-----GG
1 TGCCACGGAGTTGTGGAC-TTAAAAGGAACAAGG
* * *
1807387 TGCCACAGAGTTGTGGACTTAGAAGGAAAAAGAG
1 TGCCACGGAGTTGTGGACTTAAAAGGAACAAG-G
*
1807421 TGCCACGGAGTTGTGGGCTTAAAA-G-----GG
1 TGCCACGGAGTTGTGGACTTAAAAGGAACAAGG
* *
1807448 TGCCACAGAGTTGTGGACTTAAAAGGAAAAAGAG
1 TGCCACGGAGTTGTGGACTTAAAAGGAACAAG-G
* ** *
1807482 TGCCACGGAGTTGTGGGCTTTGAA--AAGAAGG
1 TGCCACGGAGTTGTGGACTTAAAAGGAACAAGG
* * * *
1807513 TGCCACGGAGTCGGGGACTTAGAAGGAA-AATAG
1 TGCCACGGAGTTGTGGACTTAAAAGGAACAA-GG
** * **
1807546 TGCCACATAGTTGTGGGCTTTACCA--AA-AAGG
1 TGCCACGGAGTTGTGGAC-TTAAAAGGAACAAGG
** * *
1807577 ATGCCACTAAGTCGTGGACTTTAAGAAGGAAAAAGAG
1 -TGCCACGGAGTTGTGGAC-TTAA-AAGGAACAAG-G
* * *
1807614 TGCCACGGAGTTGTGGGCTTAGAAGGAAAAAGAG
1 TGCCACGGAGTTGTGGACTTAAAAGGAACAAG-G
* *
1807648 TGCCACGGAGTTGTGGGCTT---A--AA-ATGG
1 TGCCACGGAGTTGTGGACTTAAAAGGAACAAGG
* *
1807675 TGCCACAGAGTTGTGGACTTAAAAGGAA-AATAG
1 TGCCACGGAGTTGTGGACTTAAAAGGAACAA-GG
* * ** *
1807708 TGCCACGTAGTTGTGGGCTTTGAA--AATAAGG
1 TGCCACGGAGTTGTGGACTTAAAAGGAACAAGG
* **
1807739 TGCTACGGAGTCATGGACTTTGAAAA-GAA-AAGG
1 TGCCACGGAGTTGTGGAC-TT-AAAAGGAACAAGG
* ** *
1807772 TGCCACGGAGTCGTGGACTT-TGA-G-ACAAGA
1 TGCCACGGAGTTGTGGACTTAAAAGGAACAAGG
** *
1807802 TGCCACTAAGTCGTGGACTTAAAAGGAACAAAGAG
1 TGCCACGGAGTTGTGGACTTAAAAGGAAC-AAG-G
* ** *
1807837 TGCCACGGAGTTGTGGGCTTTGAA--AATAAGG
1 TGCCACGGAGTTGTGGACTTAAAAGGAACAAGG
*
1807868 TGCCACGGAGTCGTGGACTTTAAAA
1 TGCCACGGAGTTGTGGAC-TTAAAA
1807893 AGGTATTTGA
Statistics
Matches: 522, Mismatches: 98, Indels: 101
0.72 0.14 0.14
Matches are distributed among these distances:
27 47 0.09
28 20 0.04
29 4 0.01
30 24 0.05
31 77 0.15
32 51 0.10
33 106 0.20
34 96 0.18
35 37 0.07
36 59 0.11
37 1 0.00
ACGTcount: A:0.32, C:0.14, G:0.33, T:0.21
Consensus pattern (33 bp):
TGCCACGGAGTTGTGGACTTAAAAGGAACAAGG
Found at i:1807306 original size:67 final size:63
Alignment explanation
Indices: 1807219--1807892 Score: 266
Period size: 64 Copynumber: 10.4 Consensus size: 63
1807209 TAAAAGGAAC
* * *
1807219 AAGGTGCCACGAAGTTGTGGACTTTAAAAGGGAAAAAGAGTGGCACGGAGTTGTGGGCTTTGAAA
1 AAGGTGCCACGAAGTCGTGGAC-TTAAAA-GGAAAAAG-GTGCCACGGAGTTGTGGACTTT-AAA
1807284 AG
62 AG
* * *
1807286 AAGGTGCCACGGAGTCGTGGACTTAAAAGGAACAAGGTGCCACGGGGTTGTGGACTTTAAAAGGG
1 AAGGTGCCACGAAGTCGTGGACTTAAAAGGAAAAAGGTGCCACGGAGTTGTGGACTTTAAAA---
1807351 G
63 G
* * * * * * *
1807352 AAAAGAGTGCTATGGAGTTGTGGGCTTTAAAA-G-----GGTGCCACAGAGTTGTGGACTTAGAA
1 --AAG-GTGCCACGAAGTCGTGGAC-TTAAAAGGAAAAAGGTGCCACGGAGTTGTGGACTT-TAA
*
1807411 GGAAA
61 --AAG
* * * *
1807416 AAGAGTGCCACGGAGTTGTGGGCTTAAAA-G-----GGTGCCACAGAGTTGTGGAC-TTAAAAGG
1 AAG-GTGCCACGAAGTCGTGGACTTAAAAGGAAAAAGGTGCCACGGAGTTGTGGACTTTAAAA-G
* * * ** * * *
1807474 AAAAAGAGTGCCACGGAGTTGTGGGCTTTGAA--AAGAAGGTGCCACGGAGTCGGGGAC-TTAGA
1 ---AAG-GTGCCACGAAGTCGTGGACTTAAAAGGAAAAAGGTGCCACGGAGTTGTGGACTTTA-A
*
1807536 AGGAA
61 A--AG
* * * * ** ** *
1807541 AATAGTGCCAC-ATAGTTGTGGGCTT--TACCAAAAAGGATGCCACTAAGTCGTGGACTTTAAGA
1 AA-GGTGCCACGA-AGTCGTGGACTTAAAAGGAAAAAGG-TGCCACGGAGTTGTGGACTTTAA-A
1807603 AGG
62 A-G
* * * * *
1807606 AAAAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGGC-TT-A
1 ---AAG-GTGCCACGAAGTCGTGGACTTAAAAGGAAAAAG-GTGCCACGGAGTTGTGGACTTTAA
1807669 AA-
61 AAG
* * * *
1807671 ATGGTGCCAC-AGAGTTGTGGACTTAAAAGGAAAATA-GTGCCACGTAGTTGTGGGCTTTGAAAA
1 AAGGTGCCACGA-AGTCGTGGACTTAAAAGGAAAA-AGGTGCCACGGAGTTGTGGACTTT-AAAA
*
1807734 T
63 G
* * * * * * *
1807735 AAGGTGCTACGGAGTCATGGACTTTGAAAA-G-AAAAGGTGCCACGGAGTCGTGGACTTTGAGAC
1 AAGGTGCCACGAAGTCGTGGAC-TT-AAAAGGAAAAAGGTGCCACGGAGTTGTGGACTTTAAAAG
* * *
1807798 AAGATGCCACTAAGTCGTGGACTTAAAAGGAACAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAA
1 AAGGTGCCACGAAGTCGTGGACTTAAAAGGAA-AAAG-GTGCCACGGAGTTGTGGACTTT-AAAA
*
1807863 T
63 G
*
1807864 AAGGTGCCACGGAGTCGTGGACTTTAAAA
1 AAGGTGCCACGAAGTCGTGGAC-TTAAAA
1807893 AGGTATTTGA
Statistics
Matches: 483, Mismatches: 70, Indels: 108
0.73 0.11 0.16
Matches are distributed among these distances:
57 2 0.00
59 2 0.00
60 19 0.04
61 87 0.18
62 28 0.06
63 28 0.06
64 109 0.23
65 68 0.14
66 38 0.08
67 30 0.06
68 26 0.05
69 18 0.04
70 27 0.06
71 1 0.00
ACGTcount: A:0.32, C:0.14, G:0.33, T:0.21
Consensus pattern (63 bp):
AAGGTGCCACGAAGTCGTGGACTTAAAAGGAAAAAGGTGCCACGGAGTTGTGGACTTTAAAAG
Found at i:1807452 original size:27 final size:28
Alignment explanation
Indices: 1807414--1807523 Score: 107
Period size: 27 Copynumber: 3.7 Consensus size: 28
1807404 CTTAGAAGGA
1807414 AAAAGA-GTGCCACGGAGTTGTGGGCTT
1 AAAAGAGGTGCCACGGAGTTGTGGGCTT
* *
1807441 AAAAG-GGTGCCACAGAGTTGTGGACTT
1 AAAAGAGGTGCCACGGAGTTGTGGGCTT
1807468 AAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT
1 AAAA-G----AG-GTGCCACGGAGTTGTGGGC-TT
1807503 GAAAAGAAGGTGCCACGGAGT
1 -AAAAG-AGGTGCCACGGAGT
1807524 CGGGGACTTA
Statistics
Matches: 69, Mismatches: 4, Indels: 16
0.78 0.04 0.18
Matches are distributed among these distances:
27 28 0.41
28 1 0.01
31 12 0.17
32 3 0.04
33 1 0.01
34 17 0.25
35 3 0.04
36 4 0.06
ACGTcount: A:0.32, C:0.14, G:0.35, T:0.19
Consensus pattern (28 bp):
AAAAGAGGTGCCACGGAGTTGTGGGCTT
Found at i:1807452 original size:61 final size:62
Alignment explanation
Indices: 1807321--1807633 Score: 362
Period size: 61 Copynumber: 4.9 Consensus size: 62
1807311 AAAGGAACAA
* * * * * *
1807321 GGTGCCACGGGGTTGTGGACTTTAAAAGGGGAAAAGAGTGCTATGGAGTTGTGGGCTTTAAAAG
1 GGTGCCACAGAGTTGTGGAC-TTAGAA-GGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAG
1807385 GGTGCCACAGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGGC-TTAAAAG
1 GGTGCCACAGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAG
*
1807446 GGTGCCACAGAGTTGTGGACTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAG
1 GGTGCCACAGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAAAG
* * * * **
1807509 AAGGTGCCACGGAGTCGGGGACTTAGAAGG-AAAATAGTGCCACATAGTTGTGGGCTTTACCAAA
1 --GGTGCCACAGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT----AA
1807573 AAG
60 AAG
* *
1807576 GATGCCACTA-AGTCGTGGACTTTAAGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTT
1 GGTGCCAC-AGAGTTGTGGAC-TT-AGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTT
1807634 AGAAGGAAAA
Statistics
Matches: 217, Mismatches: 21, Indels: 18
0.85 0.08 0.07
Matches are distributed among these distances:
61 60 0.28
62 27 0.12
63 10 0.05
64 43 0.20
65 40 0.18
66 2 0.01
67 11 0.05
68 24 0.11
ACGTcount: A:0.30, C:0.13, G:0.35, T:0.21
Consensus pattern (62 bp):
GGTGCCACAGAGTTGTGGACTTAGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAG
Found at i:1807671 original size:27 final size:26
Alignment explanation
Indices: 1807641--1807700 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 26
1807631 CTTAGAAGGA
* *
1807641 AAAAGAGTGCCACGGAGTTGTGGGCTT
1 AAAAG-GTGCCACAGAGTTGTGGACTT
1807668 AAAATGGTGCCACAGAGTTGTGGACTT
1 AAAA-GGTGCCACAGAGTTGTGGACTT
1807695 AAAAGG
1 AAAAGG
1807701 AAAATAGTGC
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
26 2 0.07
27 27 0.90
28 1 0.03
ACGTcount: A:0.32, C:0.13, G:0.33, T:0.22
Consensus pattern (26 bp):
AAAAGGTGCCACAGAGTTGTGGACTT
Found at i:1807689 original size:227 final size:222
Alignment explanation
Indices: 1807221--1807892 Score: 796
Period size: 223 Copynumber: 3.0 Consensus size: 222
1807211 AAAGGAACAA
*
1807221 GGTGCCAC-GAAGTTGTGGACTTTAAAAGGGAAAAAGAGTGGCACGGAGTTGTGGGCTTTGAAAA
1 GGTGCCACAG-AGTTGTGGAC-TTAAAA-GGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAA
* *
1807285 GAAGGTGCCACGGAGTCGTGGACTTAAAAGGAACAAGGTGCCACGGGGTTGTGGACTTTAAAAGG
63 GAAGGTGCCACGGAGTCGTGGACTTAGAAGGAA-AAGGTGCCACGGAGTTGTGGACTTT--AA--
* * * * * *
1807350 GGAAAAGAGTGCTA-TGGAGTTGTGGGCTTTAAAA-G-----G-GTGCCACAGAGTTGTGGACTT
123 --AAAAGA-TGCCACT-AAGTCGTGGACTTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTT
1807407 AGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAAAAG
184 AGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAAAAG
1807446 GGTGCCACAGAGTTGTGGACTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAGAA
1 GGTGCCACAGAGTTGTGGACTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAGAA
* * ** *
1807511 GGTGCCACGGAGTCGGGGACTTAGAAGGAAAATAGTGCCACATAGTTGTGGGCTTTACCAAAAAG
66 GGTGCCACGGAGTCGTGGACTTAGAAGGAAAA-GGTGCCACGGAGTTGTGGACTTTA--AAAAA-
1807576 GATGCCACTAAGTCGTGGACTTTAAGAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGA
127 GATGCCACTAAGTCGTGGACTTTAA-AAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGA
*
1807641 AAAAGAGTGCCACGGAGTTGTGGGCTTAAAAT
191 AAAAGAGTGCCACGGAGTTGTGGGCTTAAAAG
* * *
1807673 GGTGCCACAGAGTTGTGGACTTAAAAGG-AAAATAGTGCCACGTAGTTGTGGGCTTTGAAAATAA
1 GGTGCCACAGAGTTGTGGACTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAGAA
* * * * * * *
1807737 GGTGCTACGGAGTCATGGACTTTGAAAAGAAAAGGTGCCACGGAGTCGTGGACTTTGAGACAAGA
66 GGTGCCACGGAGTCGTGGACTTAG-AAGGAAAAGGTGCCACGGAGTTGTGGACTTT-AAAAAAGA
* *
1807802 TGCCACTAAGTCGTGGAC-TTAAAAGGAACAAAGAGTGCCACGGAGTTGTGGGCTTTGAA--AAT
129 TGCCACTAAGTCGTGGACTTTAAAAGGAA-AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAAA
* *
1807864 AAG-GTGCCACGGAGTCGTGGACTTTAAAA
193 AAGAGTGCCACGGAGTTGTGGGC-TTAAAA
1807893 AGGTATTTGA
Statistics
Matches: 395, Mismatches: 34, Indels: 40
0.84 0.07 0.09
Matches are distributed among these distances:
219 21 0.05
220 22 0.06
221 13 0.03
222 8 0.02
223 118 0.30
224 26 0.07
225 21 0.05
226 73 0.18
227 93 0.24
ACGTcount: A:0.32, C:0.14, G:0.33, T:0.21
Consensus pattern (222 bp):
GGTGCCACAGAGTTGTGGACTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAGAA
GGTGCCACGGAGTCGTGGACTTAGAAGGAAAAGGTGCCACGGAGTTGTGGACTTTAAAAAAGATG
CCACTAAGTCGTGGACTTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAAAAAG
AGTGCCACGGAGTTGTGGGCTTAAAAG
Found at i:1808860 original size:9 final size:9
Alignment explanation
Indices: 1808846--1808880 Score: 54
Period size: 9 Copynumber: 3.9 Consensus size: 9
1808836 TCCTTTTCTC
1808846 TTTTTTTT-
1 TTTTTTTTG
1808854 TTGTTTTTTG
1 TT-TTTTTTG
1808864 TTTTTTTTG
1 TTTTTTTTG
1808873 TTTTTTTT
1 TTTTTTTT
1808881 TGTGAAGATT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
8 2 0.08
9 21 0.84
10 2 0.08
ACGTcount: A:0.00, C:0.00, G:0.09, T:0.91
Consensus pattern (9 bp):
TTTTTTTTG
Found at i:1808867 original size:16 final size:16
Alignment explanation
Indices: 1808848--1808878 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
1808838 CTTTTCTCTT
1808848 TTTTTTTTGTTTTTTG
1 TTTTTTTTGTTTTTTG
1808864 TTTTTTTTGTTTTTT
1 TTTTTTTTGTTTTTT
1808879 TTTGTGAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.00, C:0.00, G:0.10, T:0.90
Consensus pattern (16 bp):
TTTTTTTTGTTTTTTG
Found at i:1808879 original size:19 final size:18
Alignment explanation
Indices: 1808846--1808883 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
1808836 TCCTTTTCTC
1808846 TTTTTTTTTTGTTTTTTG
1 TTTTTTTTTTGTTTTTTG
*
1808864 TTTTTTTTGTTTTTTTTTG
1 TTTTTTTT-TTGTTTTTTG
1808883 T
1 T
1808884 GAAGATTAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.00, C:0.00, G:0.11, T:0.89
Consensus pattern (18 bp):
TTTTTTTTTTGTTTTTTG
Found at i:1816195 original size:32 final size:32
Alignment explanation
Indices: 1816154--1816230 Score: 136
Period size: 32 Copynumber: 2.4 Consensus size: 32
1816144 CATTTCATAG
1816154 TGTATCGATACATCTAGGCAAATTTGCCTGCA
1 TGTATCGATACATCTAGGCAAATTTGCCTGCA
* *
1816186 TGTATCGATACATCTGGGCAAATTTGCTTGCA
1 TGTATCGATACATCTAGGCAAATTTGCCTGCA
1816218 TGTATCGATACAT
1 TGTATCGATACAT
1816231 TTTATAGTGT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
32 43 1.00
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.34
Consensus pattern (32 bp):
TGTATCGATACATCTAGGCAAATTTGCCTGCA
Found at i:1816262 original size:84 final size:84
Alignment explanation
Indices: 1816121--1816281 Score: 295
Period size: 84 Copynumber: 1.9 Consensus size: 84
1816111 CGAAATATGA
1816121 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTAGGCAAATTTGCCTGCA
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTAGGCAAATTTGCCTGCA
1816186 TGTATCGATACATCTGGGC
66 TGTATCGATACATCTGGGC
* * *
1816205 AAATTTGCTTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGCAAATTTGCCTGCA
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTAGGCAAATTTGCCTGCA
1816270 TGTATCGATACA
66 TGTATCGATACA
1816282 AAGATCAGTG
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
84 74 1.00
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.35
Consensus pattern (84 bp):
AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTAGGCAAATTTGCCTGCA
TGTATCGATACATCTGGGC
Found at i:1816292 original size:52 final size:52
Alignment explanation
Indices: 1816186--1816302 Score: 182
Period size: 52 Copynumber: 2.2 Consensus size: 52
1816176 TTTGCCTGCA
* ***
1816186 TGTATCGATACATCTGGGCAAATTTGCTTGCATGTATCGATACATTTTATAG
1 TGTATCGATACATCTGGGCAAATTTGCCTGCATGTATCGATACATAAGATAG
1816238 TGTATCGATACATCTGGGCAAATTTGCCTGCATGTATCGATACA-AAGATCAG
1 TGTATCGATACATCTGGGCAAATTTGCCTGCATGTATCGATACATAAGAT-AG
1816290 TGTATCGATACAT
1 TGTATCGATACAT
1816303 TTTTTGGCAG
Statistics
Matches: 60, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
51 2 0.03
52 58 0.97
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (52 bp):
TGTATCGATACATCTGGGCAAATTTGCCTGCATGTATCGATACATAAGATAG
Found at i:1816360 original size:13 final size:13
Alignment explanation
Indices: 1816342--1816462 Score: 80
Period size: 13 Copynumber: 7.9 Consensus size: 13
1816332 ACAAAACTTA
1816342 TGTATCGATACAT
1 TGTATCGATACAT
1816355 TGTATCGATACAACACTT
1 TGTATCGAT---ACA--T
1816373 ATGTATCGATACAT
1 -TGTATCGATACAT
1816387 TGTATCGATACAACACTT
1 TGTATCGAT---ACA--T
1816405 ATGTATCGATACAT
1 -TGTATCGATACAT
1816419 TGTATCGATACAACACTT
1 TGTATCGAT---ACA--T
1816437 ATGTATCGATACAT
1 -TGTATCGATACAT
1816451 TGTATCGATACA
1 TGTATCGATACA
1816463 ACACTTTATG
Statistics
Matches: 90, Mismatches: 0, Indels: 36
0.71 0.00 0.29
Matches are distributed among these distances:
13 39 0.43
14 3 0.03
16 18 0.20
18 3 0.03
19 27 0.30
ACGTcount: A:0.34, C:0.18, G:0.13, T:0.35
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1816366 original size:32 final size:32
Alignment explanation
Indices: 1816325--1816482 Score: 298
Period size: 32 Copynumber: 4.9 Consensus size: 32
1816315 GCTTAAATCA
*
1816325 TATCGATACAAAACTTATGTATCGATACATTG
1 TATCGATACAACACTTATGTATCGATACATTG
1816357 TATCGATACAACACTTATGTATCGATACATTG
1 TATCGATACAACACTTATGTATCGATACATTG
1816389 TATCGATACAACACTTATGTATCGATACATTG
1 TATCGATACAACACTTATGTATCGATACATTG
1816421 TATCGATACAACACTTATGTATCGATACATTG
1 TATCGATACAACACTTATGTATCGATACATTG
1816453 TATCGATACAACACTTTATGTATCGATACA
1 TATCGATACAACAC-TTATGTATCGATACA
1816483 AATCGTTGAA
Statistics
Matches: 124, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
32 109 0.88
33 15 0.12
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.34
Consensus pattern (32 bp):
TATCGATACAACACTTATGTATCGATACATTG
Found at i:1825045 original size:21 final size:21
Alignment explanation
Indices: 1824994--1825052 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 21
1824984 TAATATTCTT
* *
1824994 GAAAAGAAATTAAGTGAATTA
1 GAAAAGAAAATAAATGAATTA
*
1825015 GAAAAAAAAATAAATGAATTA
1 GAAAAGAAAATAAATGAATTA
** *
1825036 GAGGAGAAAAGAAATGA
1 GAAAAGAAAATAAATGA
1825053 GTTGCAAGTG
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.63, C:0.00, G:0.20, T:0.17
Consensus pattern (21 bp):
GAAAAGAAAATAAATGAATTA
Found at i:1826218 original size:13 final size:13
Alignment explanation
Indices: 1826200--1826225 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1826190 CATATGACAC
1826200 TTGTTAAATGATT
1 TTGTTAAATGATT
1826213 TTGTTAAATGATT
1 TTGTTAAATGATT
1826226 GTTAATTCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (13 bp):
TTGTTAAATGATT
Found at i:1829127 original size:36 final size:32
Alignment explanation
Indices: 1829080--1829175 Score: 108
Period size: 36 Copynumber: 2.9 Consensus size: 32
1829070 AAGTGATTGT
1829080 AAGGTTCTATCTTAGCCTTTGTAAAAGATAGAGAG
1 AAGGTTCTATCTTAGCCTTTG-AAAAGATAG-G-G
**
1829115 AAAGGTTCTATCTTAGCCCGTGAAAAGATAGGG
1 -AAGGTTCTATCTTAGCCTTTGAAAAGATAGGG
1829148 -AGGTTTCTATCTTAGCC-TTG-AAAGATAG
1 AAGG-TTCTATCTTAGCCTTTGAAAAGATAG
1829176 TGTTGTAAAG
Statistics
Matches: 56, Mismatches: 3, Indels: 8
0.84 0.04 0.12
Matches are distributed among these distances:
30 8 0.14
31 5 0.09
32 13 0.23
33 1 0.02
34 1 0.02
35 9 0.16
36 19 0.34
ACGTcount: A:0.32, C:0.14, G:0.24, T:0.30
Consensus pattern (32 bp):
AAGGTTCTATCTTAGCCTTTGAAAAGATAGGG
Found at i:1833828 original size:19 final size:20
Alignment explanation
Indices: 1833804--1833854 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
1833794 CGATATATTG
*
1833804 TATCGATACATGTTC-ATTA
1 TATCGATACATGCTCAATTA
* *
1833823 TATCGATACATACTCAATTG
1 TATCGATACATGCTCAATTA
1833843 TATCGATACATG
1 TATCGATACATG
1833855 AAAGTGGTAG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
19 13 0.48
20 14 0.52
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.37
Consensus pattern (20 bp):
TATCGATACATGCTCAATTA
Found at i:1833848 original size:20 final size:19
Alignment explanation
Indices: 1833800--1833853 Score: 72
Period size: 19 Copynumber: 2.8 Consensus size: 19
1833790 GTATCGATAT
**
1833800 ATTGTATCGATACATGTTC
1 ATTGTATCGATACATACTC
*
1833819 ATTATATCGATACATACTC
1 ATTGTATCGATACATACTC
1833838 AATTGTATCGATACAT
1 -ATTGTATCGATACAT
1833854 GAAAGTGGTA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 16 0.53
20 14 0.47
ACGTcount: A:0.33, C:0.17, G:0.11, T:0.39
Consensus pattern (19 bp):
ATTGTATCGATACATACTC
Found at i:1837289 original size:20 final size:21
Alignment explanation
Indices: 1837266--1837319 Score: 83
Period size: 20 Copynumber: 2.6 Consensus size: 21
1837256 TATTTCAAAC
1837266 ATGTATCGATACATTCACTT-
1 ATGTATCGATACATTCACTTG
1837286 ATGTATCGATACATTCACTTG
1 ATGTATCGATACATTCACTTG
* *
1837307 TTGTATCAATACA
1 ATGTATCGATACA
1837320 AATTGTAGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
20 20 0.65
21 11 0.35
ACGTcount: A:0.31, C:0.19, G:0.11, T:0.39
Consensus pattern (21 bp):
ATGTATCGATACATTCACTTG
Found at i:1840677 original size:13 final size:13
Alignment explanation
Indices: 1840659--1840685 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1840649 ACATTATGCT
1840659 TTGTATCGATACA
1 TTGTATCGATACA
1840672 TTGTATCGATACA
1 TTGTATCGATACA
1840685 T
1 T
1840686 ATTCATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:1840700 original size:32 final size:33
Alignment explanation
Indices: 1840640--1840704 Score: 105
Period size: 32 Copynumber: 2.0 Consensus size: 33
1840630 CATATCCAGA
*
1840640 TGTATCGATACATTATGCTTTGTATCGATACAT
1 TGTATCGATACATTATGCATTGTATCGATACAT
*
1840673 TGTATCGATACA-TATTCATTGTATCGATACAT
1 TGTATCGATACATTATGCATTGTATCGATACAT
1840705 GAACAATTGT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.60
33 12 0.40
ACGTcount: A:0.29, C:0.15, G:0.14, T:0.42
Consensus pattern (33 bp):
TGTATCGATACATTATGCATTGTATCGATACAT
Found at i:1840715 original size:20 final size:19
Alignment explanation
Indices: 1840669--1840731 Score: 85
Period size: 20 Copynumber: 3.3 Consensus size: 19
1840659 TTGTATCGAT
1840669 ACATTGTATCGATACAT-A
1 ACATTGTATCGATACATGA
*
1840687 TTCATTGTATCGATACATGA
1 -ACATTGTATCGATACATGA
1840707 ACAATTGTATCGATACATGA
1 AC-ATTGTATCGATACATGA
1840727 A-ATTG
1 ACATTG
1840732 GCAGTAGCTA
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
18 4 0.10
19 17 0.43
20 19 0.47
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.35
Consensus pattern (19 bp):
ACATTGTATCGATACATGA
Found at i:1840797 original size:33 final size:33
Alignment explanation
Indices: 1840755--1840819 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 33
1840745 TATCACTGTT
** * *
1840755 TGTATCGATACATGGCGCATTGTATTGATACAA
1 TGTATCGATACATGAAGAATTGTATCGATACAA
1840788 TGTATCGATACATGAAGAATTGTATCGATACA
1 TGTATCGATACATGAAGAATTGTATCGATACA
1840820 TTGTCCCAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.32
Consensus pattern (33 bp):
TGTATCGATACATGAAGAATTGTATCGATACAA
Found at i:1842882 original size:20 final size:19
Alignment explanation
Indices: 1842857--1842929 Score: 74
Period size: 20 Copynumber: 3.7 Consensus size: 19
1842847 AAACCCTTGT
1842857 ATGTATCGATACATATCCA
1 ATGTATCGATACATATCCA
* *
1842876 GATGTATCGATACATTATGCT
1 -ATGTATCGATACA-TATCCA
* * *
1842897 TTGTATCGATACATGTTCA
1 ATGTATCGATACATATCCA
*
1842916 TTGTATCGATACAT
1 ATGTATCGATACAT
1842930 GCACAATTTT
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
19 17 0.37
20 25 0.54
21 4 0.09
ACGTcount: A:0.30, C:0.16, G:0.15, T:0.38
Consensus pattern (19 bp):
ATGTATCGATACATATCCA
Found at i:1842944 original size:20 final size:19
Alignment explanation
Indices: 1842897--1842950 Score: 72
Period size: 19 Copynumber: 2.8 Consensus size: 19
1842887 ACATTATGCT
**
1842897 TTGTATCGATACATGTTCA
1 TTGTATCGATACATGCACA
1842916 TTGTATCGATACATGCACAA
1 TTGTATCGATACATGCAC-A
*
1842936 TTTTATCGATACATG
1 TTGTATCGATACATG
1842951 AAATTGGCAG
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
19 16 0.52
20 15 0.48
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.39
Consensus pattern (19 bp):
TTGTATCGATACATGCACA
Found at i:1843018 original size:13 final size:13
Alignment explanation
Indices: 1843000--1843024 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1842990 CATGGCACAT
1843000 TGTATCGATACAA
1 TGTATCGATACAA
1843013 TGTATCGATACA
1 TGTATCGATACA
1843025 TGAAGAATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1843035 original size:33 final size:33
Alignment explanation
Indices: 1842982--1843044 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
1842972 CCACTGTTTA
*
1842982 TATCGATACATGGCACATTGTATCGATACAATG
1 TATCGATACATGGCACATTGTATCAATACAATG
1843015 TATCGATACATGAAG-A-ATTGTATCAATACA
1 TATCGATACATG--GCACATTGTATCAATACA
1843045 TTGTCCTAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
33 25 0.93
34 1 0.04
35 1 0.04
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.30
Consensus pattern (33 bp):
TATCGATACATGGCACATTGTATCAATACAATG
Found at i:1846222 original size:23 final size:23
Alignment explanation
Indices: 1846196--1846241 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
1846186 AGATCTTTAG
*
1846196 CATATTAACATAGCATAGCATGC
1 CATATTAACATAGCATAACATGC
1846219 CATATTAACATAGCATAACATGC
1 CATATTAACATAGCATAACATGC
1846242 ATAAGAGACA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.41, C:0.22, G:0.11, T:0.26
Consensus pattern (23 bp):
CATATTAACATAGCATAACATGC
Found at i:1846252 original size:23 final size:23
Alignment explanation
Indices: 1846202--1846252 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
1846192 TTAGCATATT
* **
1846202 AACATAGCATAGCATGCCATATT
1 AACATAGCATAACATGCCATAAG
1846225 AACATAGCATAACATG-CATAAG
1 AACATAGCATAACATGCCATAAG
1846247 AGACAT
1 A-ACAT
1846253 TTCATTAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 5 0.21
23 19 0.79
ACGTcount: A:0.45, C:0.20, G:0.14, T:0.22
Consensus pattern (23 bp):
AACATAGCATAACATGCCATAAG
Found at i:1846659 original size:21 final size:22
Alignment explanation
Indices: 1846634--1846694 Score: 63
Period size: 20 Copynumber: 2.8 Consensus size: 22
1846624 TTCTTACTCT
1846634 TTTTTTTTTCTTTTTTTTG-CC
1 TTTTTTTTTCTTTTTTTTGCCC
***
1846655 -TTTTTTTTGAATTTTTTGCCC
1 TTTTTTTTTCTTTTTTTTGCCC
*
1846676 TTTTTCTTCTCTTTTTTTT
1 TTTTT-TTTTCTTTTTTTT
1846695 TTTATGTTGG
Statistics
Matches: 30, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
20 15 0.50
21 2 0.07
22 4 0.13
23 9 0.30
ACGTcount: A:0.03, C:0.15, G:0.05, T:0.77
Consensus pattern (22 bp):
TTTTTTTTTCTTTTTTTTGCCC
Found at i:1847299 original size:21 final size:21
Alignment explanation
Indices: 1847273--1847313 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
1847263 CATCAAGATA
*
1847273 TCGATACATTGTCATAATGTT
1 TCGATACATTGCCATAATGTT
1847294 TCGATACATTGCCATAATGT
1 TCGATACATTGCCATAATGT
1847314 ATCAAAACCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.39
Consensus pattern (21 bp):
TCGATACATTGCCATAATGTT
Found at i:1847347 original size:21 final size:22
Alignment explanation
Indices: 1847270--1847347 Score: 54
Period size: 21 Copynumber: 3.7 Consensus size: 22
1847260 TAGCATCAAG
* *
1847270 ATATCGATACATT-GTCATAAT
1 ATATCAATACATTGGCCATAAT
* * *
1847291 GTTTCGATACATT-GCCATAAT
1 ATATCAATACATTGGCCATAAT
* * *
1847312 GTATCAAAACCTTGGCC-TAAT
1 ATATCAATACATTGGCCATAAT
*
1847333 ATATTAATACATTGG
1 ATATCAATACATTGG
1847348 TGCCTCAAAA
Statistics
Matches: 45, Mismatches: 11, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
21 42 0.93
22 3 0.07
ACGTcount: A:0.35, C:0.17, G:0.13, T:0.36
Consensus pattern (22 bp):
ATATCAATACATTGGCCATAAT
Found at i:1847741 original size:58 final size:58
Alignment explanation
Indices: 1847676--1847794 Score: 220
Period size: 58 Copynumber: 2.1 Consensus size: 58
1847666 TTGAAAATAA
*
1847676 AATATCAAGAAAAACAAGTTTGCTATAAATTAATCAATTCGAATTAGGTTAATGGAAG
1 AATATCAAGAAAAACAAGTTTGCTATAAATTAATCAATTAGAATTAGGTTAATGGAAG
*
1847734 AATATCAAGAAAAACAGGTTTGCTATAAATTAATCAATTAGAATTAGGTTAATGGAAG
1 AATATCAAGAAAAACAAGTTTGCTATAAATTAATCAATTAGAATTAGGTTAATGGAAG
1847792 AAT
1 AAT
1847795 TGAATTCACA
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
58 59 1.00
ACGTcount: A:0.47, C:0.08, G:0.16, T:0.29
Consensus pattern (58 bp):
AATATCAAGAAAAACAAGTTTGCTATAAATTAATCAATTAGAATTAGGTTAATGGAAG
Found at i:1848842 original size:16 final size:16
Alignment explanation
Indices: 1848821--1848851 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
1848811 GGATATCTAG
1848821 AAAATCAGGAAATTTC
1 AAAATCAGGAAATTTC
*
1848837 AAAATCAGTAAATTT
1 AAAATCAGGAAATTT
1848852 GTAGATCTAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.10, G:0.10, T:0.29
Consensus pattern (16 bp):
AAAATCAGGAAATTTC
Found at i:1848883 original size:18 final size:19
Alignment explanation
Indices: 1848860--1848902 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
1848850 TTGTAGATCT
1848860 AGAAATCTGC-AGAAATCA
1 AGAAATCTGCTAGAAATCA
*
1848878 AGAAATCTGCTAGAATTCA
1 AGAAATCTGCTAGAAATCA
*
1848897 GGAAAT
1 AGAAAT
1848903 TTGGAAATCT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 10 0.45
19 12 0.55
ACGTcount: A:0.47, C:0.14, G:0.19, T:0.21
Consensus pattern (19 bp):
AGAAATCTGCTAGAAATCA
Found at i:1858145 original size:19 final size:19
Alignment explanation
Indices: 1858123--1858159 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
1858113 AAAAAATAGG
1858123 AAATAAAA-AGAATTAAAAT
1 AAATAAAACA-AATTAAAAT
1858142 AAATAAAACAAATTAAAA
1 AAATAAAACAAATTAAAA
1858160 AGGAAAATTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 16 0.94
20 1 0.06
ACGTcount: A:0.76, C:0.03, G:0.03, T:0.19
Consensus pattern (19 bp):
AAATAAAACAAATTAAAAT
Found at i:1864562 original size:51 final size:52
Alignment explanation
Indices: 1864466--1864585 Score: 224
Period size: 51 Copynumber: 2.3 Consensus size: 52
1864456 TGAAAAGTTA
*
1864466 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
1864518 CTGCATGTATCGATACATTT-ATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
1864569 CTGCATGTATCGATACA
1 CTGCATGTATCGATACA
1864586 AAAATCAGTG
Statistics
Matches: 67, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
51 47 0.70
52 20 0.30
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.34
Consensus pattern (52 bp):
CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
Found at i:1864612 original size:13 final size:13
Alignment explanation
Indices: 1864594--1864618 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1864584 CAAAAATCAG
1864594 TGTATCGATACAA
1 TGTATCGATACAA
1864607 TGTATCGATACA
1 TGTATCGATACA
1864619 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1864702 original size:13 final size:13
Alignment explanation
Indices: 1864684--1864708 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1864674 AAAAAAAATA
1864684 TGTATCGATACAT
1 TGTATCGATACAT
1864697 TGTATCGATACA
1 TGTATCGATACA
1864709 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1865696 original size:55 final size:52
Alignment explanation
Indices: 1865636--1867762 Score: 1062
Period size: 49 Copynumber: 43.3 Consensus size: 52
1865626 CGATATTGGG
* *
1865636 CTTAAAGATGAGAAAAAGGATGTCAACGTGCTGATTCAAGGCCAGCTACATTGAA
1 CTTAAAGATG-G-AAAAGG-TGCCAACATGCTGATTCAAGGCCAGCTACATTGAA
* * * *
1865691 CTTAAAGATGGAAAATGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGA
1 CTTAAAGATGGAAAAGGTGCCAACATGCTGATTCAAGGCCAGCTACATTGAA
** * * *
1865743 C-T-----T---AAAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGA
1 CTTAAAGATGGAAAAGGTGCCAACATGCTGATTCAAGGCCAGCTACATTGAA
** * *
1865786 C-T-----T---AAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGA
1 CTTAAAGATGGAAAAGGTGCCAACATGCTGATTCAAGGCCAGCTACATTGAA
* * * *
1865829 CTTAAAGATGGAAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGA
1 CTTAAAGATGGAAAAGGTGCCAACATGCTGATTCAAGGCCAGCTACATTGAA
* ** * * * * *
1865881 CTTAAAAATGATGATGAGAAAAGTGATAAAGATGCCAATATGTTGATTCATGGCCAACGATATTG
1 CTT--AAA-GATG--GA-AAAGGTG--CCA-A---C---ATGCTGATTCAAGGCCAGCTACATTG
**
1865946 GG
51 AA
** *
1865948 C-T-----T---AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGA
1 CTTAAAGATGGAAAAGGTGCCAACATGCTGATTCAAGGCCAGCTACATTGAA
* * * * * *
1865991 CTTAAAGAT-G--AAGATGCCAATATGCTGATTCAAGGCCAACGATATTGGA
1 CTTAAAGATGGAAAAGGTGCCAACATGCTGATTCAAGGCCAGCTACATTGAA
** *
1866040 C-T-----T---AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGA
1 CTTAAAGATGGAAAAGGTGCCAACATGCTGATTCAAGGCCAGCTACATTGAA
* * * * *
1866083 CTTAAAGAT-G--AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGA
1 CTTAAAGATGGAAAAGGTGCCAACATGCTGATTCAAGGCCAGCTACATTGAA
** * *
1866132 CTTAAAGAT-G--AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGA
1 CTTAAAGATGGAAAAGGTGCCAACATGCTGATTCAAGGCCAGCTACATTGAA
* * * *
1866181 CTTAAAGATGG---AGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGA
1 CTTAAAGATGGAAAAGGTGCCAACATGCTGATTCAAGGCCAGCTACATTGAA
** * * *
1866230 C-T-----T---AAAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGA
1 CTTAAAGATGGAAAAGGTGCCAACATGCTGATTCAAGGCCAGCTACATTGAA
** * *
1866273 C-T-----T---AAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGA
1 CTTAAAGATGGAAAAGGTGCCAACATGCTGATTCAAGGCCAGCTACATTGAA
* * * *
1866316 CTTAAAGATGGAAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGA
1 CTTAAAGATGGAAAAGGTGCCAACATGCTGATTCAAGGCCAGCTACATTGAA
* ** * * * * *
1866368 CTTAAAAATGATGATGAGAAAAGTGATAAAGATGCCAATATGTTGATTCATGGCCAACGATATTG
1 CTT--AAA-GATG--GA-AAAGGTG--CCA-A---C---ATGCTGATTCAAGGCCAGCTACATTG
**
1866433 GG
51 AA
** *
1866435 C-T-----T---AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGA
1 CTTAAAGATGGAAAAGGTGCCAACATGCTGATTCAAGGCCAGCTACATTGAA
* * * * * *
1866478 CTTAAAGAT-G--AAGATGCCAATATGCTGATTCAAGGCCAACGATATTGGA
1 CTTAAAGATGGAAAAGGTGCCAACATGCTGATTCAAGGCCAGCTACATTGAA
** *
1866527 C-T-----T---AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGA
1 CTTAAAGATGGAAAAGGTGCCAACATGCTGATTCAAGGCCAGCTACATTGAA
* * * * *
1866570 CTTAAAGAT-G--AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGA
1 CTTAAAGATGGAAAAGGTGCCAACATGCTGATTCAAGGCCAGCTACATTGAA
** * * *
1866619 CTTAAAGAT-G--AAGGTGCCAATGTTCTGAGTCAAGGCCAGCTACATTGGA
1 CTTAAAGATGGAAAAGGTGCCAACATGCTGATTCAAGGCCAGCTACATTGAA
* * * * *
1866668 CTTAAAGATGG---AGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGA
1 CTTAAAGATGGAAAAGGTGCCAACATGCTGATTCAAGGCCAGCTACATTGAA
** * *
1866717 CTTAAAGAT-G--AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGA
1 CTTAAAGATGGAAAAGGTGCCAACATGCTGATTCAAGGCCAGCTACATTGAA
* * * * *
1866766 CTTAAAGAT-G--AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGA
1 CTTAAAGATGGAAAAGGTGCCAACATGCTGATTCAAGGCCAGCTACATTGAA
** * *
1866815 CTTAAAGAT-G--AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGA
1 CTTAAAGATGGAAAAGGTGCCAACATGCTGATTCAAGGCCAGCTACATTGAA
* * * * *
1866864 CTTAAAGAT-G--AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGA
1 CTTAAAGATGGAAAAGGTGCCAACATGCTGATTCAAGGCCAGCTACATTGAA
** * *
1866913 CTTAAAGAT-G--AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGA
1 CTTAAAGATGGAAAAGGTGCCAACATGCTGATTCAAGGCCAGCTACATTGAA
* * * * *
1866962 CTTAAAGAT-G--AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGA
1 CTTAAAGATGGAAAAGGTGCCAACATGCTGATTCAAGGCCAGCTACATTGAA
** * *
1867011 CTTAAAGAT-G--AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGA
1 CTTAAAGATGGAAAAGGTGCCAACATGCTGATTCAAGGCCAGCTACATTGAA
* * * * *
1867060 CTTAAAGATGG---AGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGA
1 CTTAAAGATGGAAAAGGTGCCAACATGCTGATTCAAGGCCAGCTACATTGAA
** * *
1867109 CTTAAAGAT-G--AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGA
1 CTTAAAGATGGAAAAGGTGCCAACATGCTGATTCAAGGCCAGCTACATTGAA
* * * * *
1867158 CTTAAAGAT-G--AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGA
1 CTTAAAGATGGAAAAGGTGCCAACATGCTGATTCAAGGCCAGCTACATTGAA
** * *
1867207 CTTAAAGAT-G--AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGA
1 CTTAAAGATGGAAAAGGTGCCAACATGCTGATTCAAGGCCAGCTACATTGAA
* * * * *
1867256 CTTAAAGAT-G--AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGA
1 CTTAAAGATGGAAAAGGTGCCAACATGCTGATTCAAGGCCAGCTACATTGAA
** * *
1867305 CTTAAAGAT-G--AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGA
1 CTTAAAGATGGAAAAGGTGCCAACATGCTGATTCAAGGCCAGCTACATTGAA
* * * * *
1867354 CTTAAAGATGG---AGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGA
1 CTTAAAGATGGAAAAGGTGCCAACATGCTGATTCAAGGCCAGCTACATTGAA
** * *
1867403 CTTAAAGAT-G--AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGA
1 CTTAAAGATGGAAAAGGTGCCAACATGCTGATTCAAGGCCAGCTACATTGAA
* * * * *
1867452 CTTAAAGAT-G--AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGA
1 CTTAAAGATGGAAAAGGTGCCAACATGCTGATTCAAGGCCAGCTACATTGAA
** * *
1867501 CTTAAAGAT-G--AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGA
1 CTTAAAGATGGAAAAGGTGCCAACATGCTGATTCAAGGCCAGCTACATTGAA
* * * * *
1867550 CTTAAAGAT-G--AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGA
1 CTTAAAGATGGAAAAGGTGCCAACATGCTGATTCAAGGCCAGCTACATTGAA
** * *
1867599 CTTAAAGAT-G--AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGA
1 CTTAAAGATGGAAAAGGTGCCAACATGCTGATTCAAGGCCAGCTACATTGAA
* * * * *
1867648 CTTAAAGATGG---AGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGA
1 CTTAAAGATGGAAAAGGTGCCAACATGCTGATTCAAGGCCAGCTACATTGAA
** * *
1867697 CTTAAAGAT-G--AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGA
1 CTTAAAGATGGAAAAGGTGCCAACATGCTGATTCAAGGCCAGCTACATTGAA
1867746 CTTAAAGATGGAAAAGG
1 CTTAAAGATGGAAAAGG
1867763 CCAGCTATAT
Statistics
Matches: 1762, Mismatches: 218, Indels: 187
0.81 0.10 0.09
Matches are distributed among these distances:
43 271 0.15
44 6 0.00
46 1 0.00
48 7 0.00
49 1239 0.70
50 8 0.00
51 1 0.00
52 125 0.07
53 5 0.00
54 7 0.00
55 18 0.01
57 4 0.00
58 14 0.01
60 2 0.00
61 2 0.00
66 2 0.00
67 50 0.03
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (52 bp):
CTTAAAGATGGAAAAGGTGCCAACATGCTGATTCAAGGCCAGCTACATTGAA
Found at i:1865768 original size:43 final size:43
Alignment explanation
Indices: 1865707--1865886 Score: 225
Period size: 43 Copynumber: 4.0 Consensus size: 43
1865697 GATGGAAAAT
*
1865707 GTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAG
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAG
*
1865750 GTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAG
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAG
* * * *
1865793 GTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAG
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC-T-----T---AAAG
1865845 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAA
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAA
1865887 AATGATGATG
Statistics
Matches: 119, Mismatches: 9, Indels: 18
0.82 0.06 0.12
Matches are distributed among these distances:
43 78 0.66
44 1 0.01
46 1 0.01
49 1 0.01
51 1 0.01
52 37 0.31
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (43 bp):
GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAG
Found at i:1865971 original size:43 final size:43
Alignment explanation
Indices: 1865907--1866373 Score: 439
Period size: 43 Copynumber: 10.1 Consensus size: 43
1865897 AGAAAAGTGA
* * * * * * *
1865907 TAAAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCT
1 TAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACT
*
1865950 TAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACT
1 TAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACT
* * *
1865993 TAAAGATGAAGATGCCAATATGCTGATTCAAGGCCAACGATATTGGACT
1 T-AA-A-G--G-TGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACT
*
1866042 TAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACT
1 TAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACT
* *
1866085 TAAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
1 T-AA-A-G--G-TGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACT
* *
1866134 TAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACT
1 T----A--AAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACT
*
1866183 TAAAGATGGAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACT
1 T-AA-A--G-G-TGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACT
*
1866232 TAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACT
1 TAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACT
* *
1866275 TAAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTT
1 TAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGAC-T
* *
1866319 AAAGATGGAAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT
1 -----T---AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACT
1866370 TAAA
1 TAAA
1866374 AATGATGATG
Statistics
Matches: 356, Mismatches: 37, Indels: 62
0.78 0.08 0.14
Matches are distributed among these distances:
43 147 0.41
44 8 0.02
45 4 0.01
46 5 0.01
47 3 0.01
48 7 0.02
49 139 0.39
50 1 0.00
51 1 0.00
52 39 0.11
53 1 0.00
54 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (43 bp):
TAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACT
Found at i:1866028 original size:49 final size:49
Alignment explanation
Indices: 1865909--1867755 Score: 2126
Period size: 49 Copynumber: 38.0 Consensus size: 49
1865899 AAAAGTGATA
* * * * *
1865909 AAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCTT-AA-A-G
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
* *
1865955 --G-TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
* *
1866001 AAGATGCCAATATGCTGATTCAAGGCCAACGATATTGGACTT-AA-A-G
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
* *
1866047 --G-TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
*
1866093 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
* * * *
1866142 AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
*
1866191 GAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT-AA-A-G
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
* *
1866237 --G-TGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTT-AA-A-G
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
* * *
1866280 --G-TGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAT-G
* * *
1866327 AAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAAATG
1 --AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
* ** * * * * * * ***
1866378 ATGATGAGAA-AAG-TGA-TAAAGATGCCA-ATATGTT-GA-TTCATGGCC
1 AAGATGCCAATATGCTGATTCAAG--GCCAGCTATATTGGACTTAAAGATG
* * * * *
1866423 AACGAT----AT-TG-GGCTTAAAGGTGCCAATGTGCTGAT-TCAAGGCCAGC-TACATTGGACT
1 AA-GATGCCAATATGCTGATTCAA-G-GCC-A---GCT-ATAT--TGG--A-CTTA-A--AGA--
1866480 TAAAG
48 T---G
* *
1866485 ATGAAGATGCCAATATGCTGATTCAAGGCCAACGATATTGGACTT-AA-A-G
1 A---AGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
* *
1866534 --G-TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
*
1866580 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
* * * * *
1866629 AAGGTGCCAATGTTCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
* *
1866678 GAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
* * * *
1866727 AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
*
1866776 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
* * * *
1866825 AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
*
1866874 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
* * * *
1866923 AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
*
1866972 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
* * * *
1867021 AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
* *
1867070 GAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
* * * *
1867119 AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
*
1867168 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
* * * *
1867217 AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
*
1867266 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
* * * *
1867315 AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
* *
1867364 GAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
* * * *
1867413 AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
*
1867462 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
* * * *
1867511 AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
*
1867560 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
* * * *
1867609 AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
* *
1867658 GAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
* * * *
1867707 AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
1867756 GAAAAGGCCA
Statistics
Matches: 1533, Mismatches: 203, Indels: 127
0.82 0.11 0.07
Matches are distributed among these distances:
42 3 0.00
43 183 0.12
44 14 0.01
45 8 0.01
46 14 0.01
47 10 0.01
48 15 0.01
49 1210 0.79
51 3 0.00
52 39 0.03
53 1 0.00
54 1 0.00
55 2 0.00
57 1 0.00
58 1 0.00
59 1 0.00
60 2 0.00
62 3 0.00
63 2 0.00
64 5 0.00
65 1 0.00
67 1 0.00
68 5 0.00
69 3 0.00
70 5 0.00
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.24
Consensus pattern (49 bp):
AAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
Found at i:1866066 original size:92 final size:92
Alignment explanation
Indices: 1865909--1866279 Score: 598
Period size: 92 Copynumber: 4.0 Consensus size: 92
1865899 AAAAGTGATA
* * *
1865909 AAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCTTAAAGGTGCCAATGTGCTGATTCA
1 AAGATGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGGTGCCAATGTGCTGATTCA
1865974 AGGCCAGCTACATTGGACTTAAAGATG
66 AGGCCAGCTACATTGGACTTAAAGATG
1866001 AAGATGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGGTGCCAATGTGCTGATTCA
1 AAGATGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGGTGCCAATGTGCTGATTCA
1866066 AGGCCAGCTACATTGGACTTAAAGATG
66 AGGCCAGCTACATTGGACTTAAAGATG
*
1866093 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
1 AAGATGCCAATATGCTGATTCAAGGCCAACGATATTGGACTT----A--AAGGTGCCAATGTGCT
*
1866158 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
60 GATTCAAGGCCAGCTACATTGGACTTAAAGATG
* * *
1866191 GAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTCA
1 AAGATGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGGTGCCAATGTGCTGATTCA
* *
1866256 AGGCCAGCGATATTGGACTTAAAG
66 AGGCCAGCTACATTGGACTTAAAG
1866280 GTGCCAATGT
Statistics
Matches: 263, Mismatches: 10, Indels: 12
0.92 0.04 0.04
Matches are distributed among these distances:
92 173 0.66
94 1 0.00
96 1 0.00
98 88 0.33
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (92 bp):
AAGATGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGGTGCCAATGTGCTGATTCA
AGGCCAGCTACATTGGACTTAAAGATG
Found at i:1867757 original size:98 final size:98
Alignment explanation
Indices: 1865909--1867755 Score: 2925
Period size: 98 Copynumber: 19.0 Consensus size: 98
1865899 AAAAGTGATA
* * * *
1865909 AAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCTT----A--AAGGTGCCAATGTGCT
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
*
1865968 GATTCAAGGCCAGCTACATTGGACTTAAAGATG
66 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
*
1866001 AAGATGCCAATATGCTGATTCAAGGCCAACGATATTGGACTT----A--AAGGTGCCAATGTGCT
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
*
1866060 GATTCAAGGCCAGCTACATTGGACTTAAAGATG
66 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
1866093 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
1866158 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
66 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
* *
1866191 GAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT----A--AAGGTGCCAATGTGCT
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
* * *
1866250 GATTCAAGGCCAGCGATATTGGACTT-AA-A-G
66 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
* * * * *
1866280 --G-TGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCAATAT
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAT-G--AAGGTGCCAATGT
* * * *
1866342 GCTGATTCAAGGCCAGCGATATTGGACTTAAAAATG
63 GCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATG
* ** * * * *** * *
1866378 ATGATGAGAA-AAG-TGA-TAAAGATGCCAATATGTTGAT-TCATGGCCAACGATATTGGGCTTA
1 AAGATGCCAATATGCTGATTCAAG--GCC---A-G-CGATAT--TGG---AC--T-TAAAG-ATG
*
1866439 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG
50 AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATG
*
1866488 AAGATGCCAATATGCTGATTCAAGGCCAACGATATTGGACTT----A--AAGGTGCCAATGTGCT
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
*
1866547 GATTCAAGGCCAGCTACATTGGACTTAAAGATG
66 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
*
1866580 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTTCT
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
1866645 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
66 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
*
1866678 GAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
1866743 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
66 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
1866776 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
1866841 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
66 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
1866874 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
1866939 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
66 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
1866972 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
1867037 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
66 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
*
1867070 GAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
1867135 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
66 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
1867168 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
1867233 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
66 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
1867266 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
1867331 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
66 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
*
1867364 GAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
1867429 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
66 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
1867462 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
1867527 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
66 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
1867560 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
1867625 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
66 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
*
1867658 GAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
1867723 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
66 GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
1867756 GAAAAGGCCA
Statistics
Matches: 1658, Mismatches: 50, Indels: 88
0.92 0.03 0.05
Matches are distributed among these distances:
86 35 0.02
87 1 0.00
89 1 0.00
90 2 0.00
91 2 0.00
92 259 0.16
94 1 0.00
95 41 0.02
96 4 0.00
97 1 0.00
98 1210 0.73
99 4 0.00
100 6 0.00
101 4 0.00
102 2 0.00
103 1 0.00
104 2 0.00
105 4 0.00
106 6 0.00
107 1 0.00
108 1 0.00
109 2 0.00
110 52 0.03
111 6 0.00
112 5 0.00
113 5 0.00
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.24
Consensus pattern (98 bp):
AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
GAGTCAAGGCCAGCTACATTGGACTTAAAGATG
Found at i:1867923 original size:34 final size:34
Alignment explanation
Indices: 1867852--1868443 Score: 603
Period size: 34 Copynumber: 18.1 Consensus size: 34
1867842 TTGGGAAGGA
* *
1867852 AAAAAGA-TGCCACAGAGTTGTGGAC-TTAAAAGGG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAA--G
*
1867886 AAAAAGAGTGCCACAGAGTTGTGGGCTTTAAAAG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAG
1867920 AAAAA-AGTGCCACGGAGTTGTGGGCTTT-----
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAG
*
1867948 --AAAGAGTGCCACGGAGTCGTGGGCTTTAAAAGG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAA-G
* * *
1867981 AAAAAGGGTGCCACGGAGTTATGGGC-TTAGAAGG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTTA-AAAG
* *
1868015 AAAAAGAGTGCCACAGAGTTGTGGGCTTT--TA-
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAG
1868046 AAAAA-AGTGCCACGGAGTTGTGGGCTTTGAAAAG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAAAG
*
1868080 AAGAAG-GTGCCACGGAGTTGTGGGCTTTAAAAAG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAAAG
*
1868114 AAGAAG-GTGCCACGGAGTTGTGGGCTTT-AAAG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAG
* *
1868146 GAAAAG-GTGCCACGGAGTTGTGGAC-TTAAAGATG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAA-A-G
*
1868180 AAAAA-AGTGCCACGGAATTGTGGGCTTTAAAAGG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAA-G
* *
1868214 AAAAAGAGTGCCACAGAGTTGTGGGCTTT--TA-
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAG
1868245 AAAAA-AGTGCCACGGAGTTGTGGGCTTTGAAAAG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAAAG
*
1868279 AAGAAG-GTGCCACGGAGTTGTGGGCTTTAAAAAG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAAAG
*
1868313 AAGAAG-GTGCCACGGAGTTGTGGGCTTT-AAAG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAG
* *
1868345 GAAAAG-GTGCCACGGAGTTGTGGAC-TTAAAGATG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAA-A-G
*
1868379 AAAAA-AGTGCCACGGAATTGTGGGCTTTAAAAG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAG
*
1868412 -----G-GTGCCACGGAGTTGTGGGCTTT-GAAG
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAG
1868439 AAAAA
1 AAAAA
1868444 ATGCCATTGA
Statistics
Matches: 480, Mismatches: 38, Indels: 82
0.80 0.06 0.14
Matches are distributed among these distances:
26 3 0.01
27 25 0.05
28 21 0.04
30 44 0.09
31 14 0.03
32 56 0.12
33 28 0.06
34 210 0.44
35 73 0.15
36 6 0.01
ACGTcount: A:0.33, C:0.12, G:0.33, T:0.21
Consensus pattern (34 bp):
AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAG
Found at i:1868205 original size:233 final size:225
Alignment explanation
Indices: 1867859--1868434 Score: 707
Period size: 233 Copynumber: 2.5 Consensus size: 225
1867849 GGAAAAAAGA
* * * *
1867859 TGCCACAGAGTTGTGGAC-TTAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTAAAAGAAA
1 TGCCACGGAGTTGTGGGCTTTAAAA-GG-AAAAG-GTGCCACGGAGTTGTGGGCTTT-AAAGGAA
* * * *
1867923 AAAGTGCCACGGAGTTGTGGGCTTTAAAGAGTGCCACGGAGTCGTGGGCTTTAAAAGGAAAAAGG
62 AAAGTGCCACGGAGTTGTGGACTTTAAAAAGTGCCACGGAATCGTGGGCTTTAAAAGGAAAAAGA
* *
1867988 GTGCCACGGAGTTATGGGCTTAGAAGGAAAAAGAGTGCCACAGAGTTGTGGGCTTT-TAAA-AA-
127 GTGCCACAGAGTTATGGGCTT-GAA--AAAAA-AGTGCCACAGAGTTGTGGGCTTTGAAAAGAAG
*
1868050 AA-GTGCCACGGAGTTGTGGGCTTTGAAAAGAAGAAGG
188 AAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAGAAGG
* *
1868087 TGCCACGGAGTTGTGGGCTTTAAAAAGAAGAAGGTGCCACGGAGTTGTGGGCTTTAAAGGAAAAG
1 TGCCACGGAGTTGTGGGCTTTAAAAGGAA-AAGGTGCCACGGAGTTGTGGGCTTTAAAGGAAAAA
*
1868152 GTGCCACGGAGTTGTGGACTTAAAGATGAAAAAAGTGCCACGGAATTGTGGGCTTTAAAAGGAAA
65 GTGCCACGGAGTTGTGGACTT-----T--AAAAAGTGCCACGGAATCGTGGGCTTTAAAAGGAAA
* ** *
1868217 AAGAGTGCCACAGAGTTGTGGGCTTTTAAAAAAAGTGCCACGGAGTTGTGGGCTTTGAAAAGAAG
123 AAGAGTGCCACAGAGTTATGGGCTTGAAAAAAAAGTGCCACAGAGTTGTGGGCTTTGAAAAGAAG
1868282 AAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAGAAGG
188 AAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAGAAGG
*
1868320 TGCCACGGAGTTGTGGGCTTT-AAAGGAAAAGGTGCCACGGAGTTGTGGAC-TTAAAGATGAAAA
1 TGCCACGGAGTTGTGGGCTTTAAAAGGAAAAGGTGCCACGGAGTTGTGGGCTTTAAAG--G-AAA
* * * * *
1868383 AAGTGCCACGGAATTGTGGGCTTTAAAAGGGTGCCACGGAGTTGTGGGCTTT
63 AAGTGCCACGGAGTTGTGGACTTTAAAA-AGTGCCACGGAATCGTGGGCTTT
1868435 GAAGAAAAAA
Statistics
Matches: 306, Mismatches: 25, Indels: 35
0.84 0.07 0.10
Matches are distributed among these distances:
226 32 0.10
227 44 0.14
228 21 0.07
229 28 0.09
230 14 0.05
231 24 0.08
232 10 0.03
233 133 0.43
ACGTcount: A:0.32, C:0.13, G:0.34, T:0.22
Consensus pattern (225 bp):
TGCCACGGAGTTGTGGGCTTTAAAAGGAAAAGGTGCCACGGAGTTGTGGGCTTTAAAGGAAAAAG
TGCCACGGAGTTGTGGACTTTAAAAAGTGCCACGGAATCGTGGGCTTTAAAAGGAAAAAGAGTGC
CACAGAGTTATGGGCTTGAAAAAAAAGTGCCACAGAGTTGTGGGCTTTGAAAAGAAGAAGGTGCC
ACGGAGTTGTGGGCTTTAAAAAGAAGAAGG
Found at i:1868239 original size:199 final size:199
Alignment explanation
Indices: 1867851--1868412 Score: 883
Period size: 199 Copynumber: 2.8 Consensus size: 199
1867841 TTTGGGAAGG
* * * *
1867851 AAAAAAGATGCCACAGAGTTGTGGAC-TT-AAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTT
1 AAAAAAG-TGCCACGGAGTTGTGGGCTTTGAAAA--GAAGAAG-GTGCCACGGAGTTGTGGGCTT
* * * *
1867914 T-AAAAGAAAAAAGTGCCACGGAGTTGTGGGCTTTAAA-G---A-GTGCCACGGAGTCGTGGGCT
62 TAAAAAGAAGAAGGTGCCACGGAGTTGTGGGCTTTAAAGGAAAAGGTGCCACGGAGTTGTGGAC-
* * * * *
1867973 TTAAA-AGGAAAAAGGGTGCCACGGAGTTATGGGC-TTAGAAGGAAAAAGAGTGCCACAGAGTTG
126 TTAAAGATGAAAAA-AGTGCCACGGAATTGTGGGCTTTAAAAGGAAAAAGAGTGCCACAGAGTTG
1868036 TGGGCTTTTA
190 TGGGCTTTTA
1868046 AAAAAAGTGCCACGGAGTTGTGGGCTTTGAAAAGAAGAAGGTGCCACGGAGTTGTGGGCTTTAAA
1 AAAAAAGTGCCACGGAGTTGTGGGCTTTGAAAAGAAGAAGGTGCCACGGAGTTGTGGGCTTTAAA
1868111 AAGAAGAAGGTGCCACGGAGTTGTGGGCTTTAAAGGAAAAGGTGCCACGGAGTTGTGGACTTAAA
66 AAGAAGAAGGTGCCACGGAGTTGTGGGCTTTAAAGGAAAAGGTGCCACGGAGTTGTGGACTTAAA
1868176 GATGAAAAAAGTGCCACGGAATTGTGGGCTTTAAAAGGAAAAAGAGTGCCACAGAGTTGTGGGCT
131 GATGAAAAAAGTGCCACGGAATTGTGGGCTTTAAAAGGAAAAAGAGTGCCACAGAGTTGTGGGCT
1868241 TTTA
196 TTTA
1868245 AAAAAAGTGCCACGGAGTTGTGGGCTTTGAAAAGAAGAAGGTGCCACGGAGTTGTGGGCTTTAAA
1 AAAAAAGTGCCACGGAGTTGTGGGCTTTGAAAAGAAGAAGGTGCCACGGAGTTGTGGGCTTTAAA
1868310 AAGAAGAAGGTGCCACGGAGTTGTGGGCTTTAAAGGAAAAGGTGCCACGGAGTTGTGGACTTAAA
66 AAGAAGAAGGTGCCACGGAGTTGTGGGCTTTAAAGGAAAAGGTGCCACGGAGTTGTGGACTTAAA
1868375 GATGAAAAAAGTGCCACGGAATTGTGGGCTTTAAAAGG
131 GATGAAAAAAGTGCCACGGAATTGTGGGCTTTAAAAGG
1868413 GTGCCACGGA
Statistics
Matches: 344, Mismatches: 13, Indels: 16
0.92 0.03 0.04
Matches are distributed among these distances:
193 21 0.06
194 56 0.16
195 10 0.03
196 4 0.01
198 23 0.07
199 230 0.67
ACGTcount: A:0.34, C:0.12, G:0.33, T:0.21
Consensus pattern (199 bp):
AAAAAAGTGCCACGGAGTTGTGGGCTTTGAAAAGAAGAAGGTGCCACGGAGTTGTGGGCTTTAAA
AAGAAGAAGGTGCCACGGAGTTGTGGGCTTTAAAGGAAAAGGTGCCACGGAGTTGTGGACTTAAA
GATGAAAAAAGTGCCACGGAATTGTGGGCTTTAAAAGGAAAAAGAGTGCCACAGAGTTGTGGGCT
TTTA
Found at i:1868475 original size:30 final size:30
Alignment explanation
Indices: 1868414--1868558 Score: 157
Period size: 31 Copynumber: 4.7 Consensus size: 30
1868404 TTTAAAAGGG
* * * *
1868414 TGCCACGGAGTTGTGGGCTTTGAAGAAAAAA
1 TGCCACTGAGTCGTGGACTTTG-AGACAAAA
* *
1868445 TGCCATTGAGTCGTGGACCTTGAGACAAAA
1 TGCCACTGAGTCGTGGACTTTGAGACAAAA
* *
1868475 TGCCACTGAGTCGTGGACTTTAAAGAAAAAGA
1 TGCCACTGAGTCGTGGACTTT-GAGACAAA-A
*
1868507 TGCCACTGAGTCGTGGACTTTGAG-CAGAGAT
1 TGCCACTGAGTCGTGGACTTTGAGACA-A-AA
1868538 TGCCACTGAGTCGTGGACTTT
1 TGCCACTGAGTCGTGGACTTT
1868559 TTTTTTTTTT
Statistics
Matches: 97, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
30 27 0.28
31 47 0.48
32 23 0.24
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (30 bp):
TGCCACTGAGTCGTGGACTTTGAGACAAAA
Found at i:1868562 original size:1 final size:1
Alignment explanation
Indices: 1868556--1868581 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
1868546 AGTCGTGGAC
1868556 TTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTT
1868582 AAAAAGGTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:1869569 original size:1 final size:1
Alignment explanation
Indices: 1869526--1869552 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
1869516 GGGTTTTTCC
1869526 TTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTT
1869553 GCATCTTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:1876909 original size:51 final size:52
Alignment explanation
Indices: 1876812--1876931 Score: 215
Period size: 51 Copynumber: 2.3 Consensus size: 52
1876802 TGAAAAGTTA
*
1876812 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTAGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTAGGCAAATTTGC
*
1876864 CTGCATGTATCGATACATTT-ATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTAGGCAAATTTGC
1876915 CTGCATGTATCGATACA
1 CTGCATGTATCGATACA
1876932 AAAATCAGTG
Statistics
Matches: 66, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
51 46 0.70
52 20 0.30
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.34
Consensus pattern (52 bp):
CTGCATGTATCGATACATTTAATAATGTATCGATACATCTAGGCAAATTTGC
Found at i:1876958 original size:13 final size:13
Alignment explanation
Indices: 1876940--1876964 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1876930 CAAAAATCAG
1876940 TGTATCGATACAA
1 TGTATCGATACAA
1876953 TGTATCGATACA
1 TGTATCGATACA
1876965 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1877048 original size:13 final size:13
Alignment explanation
Indices: 1877030--1877054 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1877020 AAAAAAAATA
1877030 TGTATCGATACAT
1 TGTATCGATACAT
1877043 TGTATCGATACA
1 TGTATCGATACA
1877055 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1877553 original size:12 final size:12
Alignment explanation
Indices: 1877536--1877577 Score: 59
Period size: 12 Copynumber: 3.6 Consensus size: 12
1877526 AAATCTTCAC
*
1877536 TTTTTTT-TTTC
1 TTTTTTTCTTTT
1877547 TTTTTTTCTTTT
1 TTTTTTTCTTTT
*
1877559 TTTTTTACTTTT
1 TTTTTTTCTTTT
1877571 TTTTTTT
1 TTTTTTT
1877578 ACAATTGCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
11 7 0.26
12 20 0.74
ACGTcount: A:0.02, C:0.07, G:0.00, T:0.90
Consensus pattern (12 bp):
TTTTTTTCTTTT
Found at i:1877559 original size:19 final size:20
Alignment explanation
Indices: 1877535--1877577 Score: 72
Period size: 19 Copynumber: 2.2 Consensus size: 20
1877525 CAAATCTTCA
1877535 CTTTTTTTTTT-CTTTTTTT
1 CTTTTTTTTTTACTTTTTTT
1877554 CTTTTTTTTTTACTTTTTTT
1 CTTTTTTTTTTACTTTTTTT
1877574 -TTTT
1 CTTTT
1877578 ACAATTGCCA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 15 0.65
20 8 0.35
ACGTcount: A:0.02, C:0.09, G:0.00, T:0.88
Consensus pattern (20 bp):
CTTTTTTTTTTACTTTTTTT
Found at i:1877578 original size:13 final size:13
Alignment explanation
Indices: 1877541--1877579 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
1877531 TTCACTTTTT
*
1877541 TTTTTCTTTTTTTC
1 TTTTT-TTTTTTAC
1877555 -TTTTTTTTTTAC
1 TTTTTTTTTTTAC
1877567 TTTTTTTTTTTAC
1 TTTTTTTTTTTAC
1877580 AATTGCCATG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
12 7 0.30
13 16 0.70
ACGTcount: A:0.05, C:0.10, G:0.00, T:0.85
Consensus pattern (13 bp):
TTTTTTTTTTTAC
Found at i:1888416 original size:97 final size:95
Alignment explanation
Indices: 1888234--1888463 Score: 307
Period size: 97 Copynumber: 2.4 Consensus size: 95
1888224 CCTCGAGGAT
* * *
1888234 ACTCCAACCCCATTCTTCCGAAGGGATATTCCAAACCCGCTTTTAAATTGTCAAGATTCAAATCT
1 ACTCCAACCCCATTCCTCCGAGGGGATACTCC-AACCCGCTTTTAAATTGTCAAGATTCAAATCT
*
1888299 TATTCTCCCTTAAATTGTCATCATCGGGGAC
65 TATTCTCACTTAAATTGTCATCATCGGGGAC
* *
1888330 ACTCCAACCCCATTCCTCCGAGGGGATACTACAACCTCGCTTTTAAACTTGTCAAGATTCAAATT
1 ACTCCAACCCCATTCCTCCGAGGGGATACTCCAACC-CGCTTTTAAA-TTGTCAAGATTCAAATC
* **
1888395 TTATTCTCATTTAAATTGTCATCATTTGGGAC
64 TTATTCTCACTTAAATTGTCATCATCGGGGAC
* * ** *
1888427 ATTTCAACCTTATTCCTCCGAGGGGATGCTCCAACCC
1 ACTCCAACCCCATTCCTCCGAGGGGATACTCCAACCC
1888464 CGTTTTTTTT
Statistics
Matches: 117, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
95 4 0.03
96 39 0.33
97 74 0.63
ACGTcount: A:0.27, C:0.28, G:0.13, T:0.32
Consensus pattern (95 bp):
ACTCCAACCCCATTCCTCCGAGGGGATACTCCAACCCGCTTTTAAATTGTCAAGATTCAAATCTT
ATTCTCACTTAAATTGTCATCATCGGGGAC
Found at i:1892849 original size:44 final size:44
Alignment explanation
Indices: 1892786--1892870 Score: 152
Period size: 44 Copynumber: 1.9 Consensus size: 44
1892776 TCTAGCAAAG
*
1892786 CCAATGACAATTAACTTGAAATTTTCATTTTATTTTTAGATAAA
1 CCAATAACAATTAACTTGAAATTTTCATTTTATTTTTAGATAAA
*
1892830 CCAATAACAATTAACTTGAAATTTTGATTTTATTTTTAGAT
1 CCAATAACAATTAACTTGAAATTTTCATTTTATTTTTAGAT
1892871 GAAAATAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.38, C:0.11, G:0.07, T:0.45
Consensus pattern (44 bp):
CCAATAACAATTAACTTGAAATTTTCATTTTATTTTTAGATAAA
Found at i:1893102 original size:18 final size:19
Alignment explanation
Indices: 1893065--1893103 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
1893055 GTCACAAAAG
*
1893065 TTTTAAAAGAAAATTCTCC
1 TTTTAAAAGAAAATTATCC
*
1893084 TTTTAAAA-AGAATTATCC
1 TTTTAAAAGAAAATTATCC
1893102 TT
1 TT
1893104 CACCAAGGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.41, C:0.13, G:0.05, T:0.41
Consensus pattern (19 bp):
TTTTAAAAGAAAATTATCC
Found at i:1893116 original size:28 final size:29
Alignment explanation
Indices: 1893085--1893150 Score: 82
Period size: 30 Copynumber: 2.3 Consensus size: 29
1893075 AAATTCTCCT
*
1893085 TTTAAAAAGAATTATCCT-T-CACCAAGGA
1 TTTAAAAAGAA-GATCCTATCCACCAAGGA
*
1893113 TTTAAAAAGAAGATCTTAATCCACCAAGGA
1 TTTAAAAAGAAGATCCT-ATCCACCAAGGA
1893143 TTTAAAAA
1 TTTAAAAA
1893151 AAAAAATCTC
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
27 4 0.12
28 11 0.33
29 1 0.03
30 17 0.52
ACGTcount: A:0.47, C:0.15, G:0.11, T:0.27
Consensus pattern (29 bp):
TTTAAAAAGAAGATCCTATCCACCAAGGA
Found at i:1895974 original size:17 final size:19
Alignment explanation
Indices: 1895952--1895989 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
1895942 AATGGCTTGG
1895952 AAAATA-GAAAAA-GAAAA
1 AAAATACGAAAAATGAAAA
*
1895969 AAAATACTAAAAATGAAAA
1 AAAATACGAAAAATGAAAA
1895988 AA
1 AA
1895990 TAAAGGGGCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 5 0.28
19 7 0.39
ACGTcount: A:0.79, C:0.03, G:0.08, T:0.11
Consensus pattern (19 bp):
AAAATACGAAAAATGAAAA
Found at i:1896132 original size:19 final size:19
Alignment explanation
Indices: 1896108--1896150 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
1896098 AAATGAGTAA
1896108 AAAAAGA-AAGAAAAGAAAG
1 AAAAAGAGAAGAAAA-AAAG
*
1896127 AAAAAGAGAGGAAAAAAAG
1 AAAAAGAGAAGAAAAAAAG
1896146 AAAAA
1 AAAAA
1896151 CTATGAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 16 0.73
20 6 0.27
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (19 bp):
AAAAAGAGAAGAAAAAAAG
Found at i:1897117 original size:20 final size:21
Alignment explanation
Indices: 1897092--1897143 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 21
1897082 CGCCAGTTTC
* *
1897092 ATGTATCAATACA-ATTCTTT
1 ATGTATCGATACATATTATTT
1897112 ATGTATCGATACATATTATTT
1 ATGTATCGATACATATTATTT
1897133 -TGTATCGATAC
1 ATGTATCGATAC
1897144 TTCTGGACTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 23 0.79
21 6 0.21
ACGTcount: A:0.33, C:0.13, G:0.10, T:0.44
Consensus pattern (21 bp):
ATGTATCGATACATATTATTT
Found at i:1899797 original size:33 final size:33
Alignment explanation
Indices: 1899760--1899824 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 33
1899750 AATAGTACCC
*
1899760 ATGTATCGATACAAAGAACTCAGTATCGATACT
1 ATGTATCGATACAAAGAACACAGTATCGATACT
* *
1899793 ATGTATCGATACTAAGAACACAGTGTCGATAC
1 ATGTATCGATACAAAGAACACAGTATCGATAC
1899825 ATCTAGGTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.26
Consensus pattern (33 bp):
ATGTATCGATACAAAGAACACAGTATCGATACT
Found at i:1899800 original size:13 final size:13
Alignment explanation
Indices: 1899782--1899806 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1899772 AAAGAACTCA
1899782 GTATCGATACTAT
1 GTATCGATACTAT
1899795 GTATCGATACTA
1 GTATCGATACTA
1899807 AGAACACAGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACTAT
Found at i:1903891 original size:15 final size:16
Alignment explanation
Indices: 1903867--1903908 Score: 61
Period size: 15 Copynumber: 2.8 Consensus size: 16
1903857 CTTTTTCCAG
1903867 TTCAACAATTTTC-TT
1 TTCAACAATTTTCATT
*
1903882 TTCAAGAA-TTTCATT
1 TTCAACAATTTTCATT
1903897 TTCAACAATTTT
1 TTCAACAATTTT
1903909 TTATTTATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
14 4 0.17
15 16 0.70
16 3 0.13
ACGTcount: A:0.31, C:0.17, G:0.02, T:0.50
Consensus pattern (16 bp):
TTCAACAATTTTCATT
Found at i:1904345 original size:3 final size:3
Alignment explanation
Indices: 1904339--1904375 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
1904329 GTCAACTTCT
*
1904339 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCT TCA TCA T
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA T
1904376 TTTTGATGGT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.30, C:0.32, G:0.00, T:0.38
Consensus pattern (3 bp):
TCA
Found at i:1920791 original size:10 final size:10
Alignment explanation
Indices: 1920778--1920849 Score: 76
Period size: 10 Copynumber: 7.1 Consensus size: 10
1920768 AAAAAAACCC
1920778 AAAACAAAAA
1 AAAACAAAAA
1920788 AAAACAAAAA
1 AAAACAAAAA
*
1920798 AAACCAAAAA
1 AAAACAAAAA
1920808 AAAGAC--AAA
1 AAA-ACAAAAA
1920817 AAAACAAAAA
1 AAAACAAAAA
* *
1920827 ACCAAGAAAAA
1 A-AAACAAAAA
1920838 AATAACAAAAA
1 AA-AACAAAAA
1920849 A
1 A
1920850 CAGAAAGGGG
Statistics
Matches: 51, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
8 2 0.04
9 6 0.12
10 26 0.51
11 17 0.33
ACGTcount: A:0.83, C:0.12, G:0.03, T:0.01
Consensus pattern (10 bp):
AAAACAAAAA
Found at i:1920799 original size:11 final size:11
Alignment explanation
Indices: 1920778--1920849 Score: 55
Period size: 11 Copynumber: 7.0 Consensus size: 11
1920768 AAAAAAACCC
1920778 AAAAC-AAAAA
1 AAAACAAAAAA
1920788 AAAAC-AAAAA
1 AAAACAAAAAA
*
1920798 AAACCAAAAAA
1 AAAACAAAAAA
*
1920809 AAGAC---AAA
1 AAAACAAAAAA
1920817 AAAACAAAAAA
1 AAAACAAAAAA
** *
1920828 CCAAGAAAAAA
1 AAAACAAAAAA
*
1920839 ATAACAAAAAA
1 AAAACAAAAAA
1920850 CAGAAAGGGG
Statistics
Matches: 48, Mismatches: 10, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
8 7 0.15
10 14 0.29
11 27 0.56
ACGTcount: A:0.83, C:0.12, G:0.03, T:0.01
Consensus pattern (11 bp):
AAAACAAAAAA
Found at i:1920836 original size:29 final size:29
Alignment explanation
Indices: 1920785--1920849 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 29
1920775 CCCAAAACAA
*
1920785 AAAAAAACAAAAAAAACCAAAAAAAA-GAC
1 AAAAAAAC-AAAAAAACCAAAAAAAATAAC
1920814 AAAAAAAC-AAAAAACCAAGAAAAAAATAAC
1 AAAAAAACAAAAAAACC-A-AAAAAAATAAC
1920844 AAAAAA
1 AAAAAA
1920850 CAGAAAGGGG
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
27 8 0.25
28 1 0.03
29 15 0.47
30 8 0.25
ACGTcount: A:0.83, C:0.12, G:0.03, T:0.02
Consensus pattern (29 bp):
AAAAAAACAAAAAAACCAAAAAAAATAAC
Found at i:1920851 original size:29 final size:27
Alignment explanation
Indices: 1920769--1920849 Score: 85
Period size: 26 Copynumber: 2.9 Consensus size: 27
1920759 TTTATACCTA
* *
1920769 AAAAAACCCAAAACAAAAA-AAAACAA-
1 AAAAAA-CCAAAAAAAAAACAAAAAAAC
*
1920795 AAAAAACCAAAAAAAAGACAAAAAAAC
1 AAAAAACCAAAAAAAAAACAAAAAAAC
1920822 AAAAAACCAAGAAAAAAATAACAAAAAA
1 AAAAAACC-A-AAAAAAA-AACAAAAAA
1920850 CAGAAAGGGG
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
25 10 0.22
26 12 0.26
27 8 0.17
28 1 0.02
29 7 0.15
30 8 0.17
ACGTcount: A:0.81, C:0.15, G:0.02, T:0.01
Consensus pattern (27 bp):
AAAAAACCAAAAAAAAAACAAAAAAAC
Found at i:1922133 original size:28 final size:28
Alignment explanation
Indices: 1922062--1922887 Score: 771
Period size: 28 Copynumber: 28.7 Consensus size: 28
1922052 CTAGAATGTT
* *
1922062 CATCTCTTCAAAGCTCACAAGTCAGTGG
1 CATCTTTTCAAAGCCCACAAGTCAGTGG
*
1922090 CACTCTTTTCAAAGCCCACAAGTCAGTAG
1 CA-TCTTTTCAAAGCCCACAAGTCAGTGG
*
1922119 CATCTTTTTAAAGCCCACAAGTCAGTGG
1 CATCTTTTCAAAGCCCACAAGTCAGTGG
*
1922147 CA-CTCTTTCTAAGCCCACAAGTCAGTGG
1 CATCT-TTTCAAAGCCCACAAGTCAGTGG
*
1922175 CACTCTTTTCAAAGCCCACAATTCAGTGG
1 CA-TCTTTTCAAAGCCCACAAGTCAGTGG
* * *
1922204 CATCCTTTCAAAGCCCATAAGTTAGTGG
1 CATCTTTTCAAAGCCCACAAGTCAGTGG
* * *
1922232 CACCCTTTCAAAGCCCATAAGTCAGTGG
1 CATCTTTTCAAAGCCCACAAGTCAGTGG
* **
1922260 CACTTTTTTCAAAGCCCACACGAGTTGGTGG
1 CA-TCTTTTCAAAGCCCACA--AGTCAGTGG
* **
1922291 CAACTCTTTTCAAAGCCTACAAGTTTGTGG
1 C-A-TCTTTTCAAAGCCCACAAGTCAGTGG
* * *
1922321 CACCCTTTCAAAGCCCACAAGTCAATGG
1 CATCTTTTCAAAGCCCACAAGTCAGTGG
* * *
1922349 CACTATTTTCAAAGCCCACACGAATCGGTGG
1 CA-TCTTTTCAAAGCCCACA--AGTCAGTGG
*
1922380 CAACTCTTTTCATAGCCCACAAGTCAGTGG
1 C-A-TCTTTTCAAAGCCCACAAGTCAGTGG
* ** *
1922410 CATCCTTTCAAAGCCCATGAGTCAATGG
1 CATCTTTTCAAAGCCCACAAGTCAGTGG
*
1922438 CAACTCTTTTCAAAGCCCACCAGTCAGTGG
1 C-A-TCTTTTCAAAGCCCACAAGTCAGTGG
* * *
1922468 CACCCTTTCAAAGCCCACAAGTTAGTGG
1 CATCTTTTCAAAGCCCACAAGTCAGTGG
* * * *
1922496 CACCCTTTCAAAGCCCGCAAGTCAGTCG
1 CATCTTTTCAAAGCCCACAAGTCAGTGG
* *
1922524 CACCTTTTCAAAGCCTACAAGTCAGTGG
1 CATCTTTTCAAAGCCCACAAGTCAGTGG
* * * *
1922552 CACCCTTTCAAAACCCACAAGTCAATGG
1 CATCTTTTCAAAGCCCACAAGTCAGTGG
** **
1922580 CACTCTTTTCAAAGCCCATGAGTCAACGG
1 CA-TCTTTTCAAAGCCCACAAGTCAGTGG
* *
1922609 CACCCTTTCAAAGCCCACAAGTCAGTGG
1 CATCTTTTCAAAGCCCACAAGTCAGTGG
*
1922637 CA-CTCTTTCAAAGCCCACAAGTTAGTGG
1 CATCT-TTTCAAAGCCCACAAGTCAGTGG
* * * *
1922665 CACCCTTTCAAAGGCCACAAATCAGTGG
1 CATCTTTTCAAAGCCCACAAGTCAGTGG
*
1922693 CACTCTTTTCAAAGCCCACAAGTTAGTGG
1 CA-TCTTTTCAAAGCCCACAAGTCAGTGG
1922722 CATTCTTTT-AAAGCCCACAAGTCAGTGG
1 CA-TCTTTTCAAAGCCCACAAGTCAGTGG
* *
1922750 CACCCTTTCAAAGCCCACAAGTCAGTGG
1 CATCTTTTCAAAGCCCACAAGTCAGTGG
** * ** *
1922778 CCCCCTTTCAAAATCGACAAGTCAGTGG
1 CATCTTTTCAAAGCCCACAAGTCAGTGG
*
1922806 CACTCTTTTCAAAGTCCACAAG-CTAGTGG
1 CA-TCTTTTCAAAGCCCACAAGTC-AGTGG
*
1922835 CAACTATATTCAAAGCCCACACGAGTC-GATGG
1 CATCT-T-TTCAAAGCCCACA--AGTCAG-TGG
*
1922867 CAACACTTTTCAAAGCCCACA
1 C-A-TCTTTTCAAAGCCCACA
1922888 TAAGTTAGTG
Statistics
Matches: 667, Mismatches: 102, Indels: 54
0.81 0.12 0.07
Matches are distributed among these distances:
27 7 0.01
28 377 0.57
29 154 0.23
30 54 0.08
31 16 0.02
32 53 0.08
33 3 0.00
34 3 0.00
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.24
Consensus pattern (28 bp):
CATCTTTTCAAAGCCCACAAGTCAGTGG
Found at i:1922220 original size:85 final size:85
Alignment explanation
Indices: 1922068--1922887 Score: 905
Period size: 85 Copynumber: 9.5 Consensus size: 85
1922058 TGTTCATCTC
* * * *
1922068 TTCAAAGCTCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTAGCATCTTTTTAAAGC
1 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGC
*
1922133 CCACAAGTCAGTGGCACTCT
66 CCACAAGTCAGTGGCACCCT
* *
1922153 TTCTAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAATTCAGTGGCATCCTTTCAAAGC
1 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGC
* *
1922218 CCATAAGTTAGTGGCACCCT
66 CCACAAGTCAGTGGCACCCT
* * ** *
1922238 TTCAAAGCCCATAAGTCAGTGGCACTTTTTTCAAAGCCCACACGAGTTGGTGGCAACTCTTTTCA
1 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACA--AGTCAGTGGC-A-TCCTTTCA
* **
1922303 AAGCCTACAAGTTTGTGGCACCCT
62 AAGCCCACAAGTCAGTGGCACCCT
* * * * *
1922327 TTCAAAGCCCACAAGTCAATGGCACTATTTTCAAAGCCCACACGAATCGGTGGCAACTCTTTTCA
1 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACA--AGTCAGTGGC-A-TCCTTTCA
* *
1922392 TAGCCCACAAGTCAGTGGCATCCT
62 AAGCCCACAAGTCAGTGGCACCCT
** * * *
1922416 TTCAAAGCCCATGAGTCAATGGCAACTCTTTTCAAAGCCCACCAGTCAGTGGCACCCTTTCAAAG
1 TTCAAAGCCCACAAGTCAGTGGC-ACTCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAG
*
1922481 CCCACAAGTTAGTGGCACCCT
65 CCCACAAGTCAGTGGCACCCT
* * * * *
1922502 TTCAAAGCCCGCAAGTCAGTCGCAC-CTTTTCAAAGCCTACAAGTCAGTGGCACCCTTTCAAAAC
1 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGC
* *
1922566 CCACAAGTCAATGGCACTCTT
66 CCACAAGTCAGTGGCAC-CCT
** ** *
1922587 TTCAAAGCCCATGAGTCAACGGCAC-CCTTTCAAAGCCCACAAGTCAGTGGCA-CTCTTTCAAAG
1 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCATC-CTTTCAAAG
*
1922650 CCCACAAGTTAGTGGCACCCT
65 CCCACAAGTCAGTGGCACCCT
* * * * *
1922671 TTCAAAGGCCACAAATCAGTGGCACTCTTTTCAAAGCCCACAAGTTAGTGGCATTCTTTTAAAGC
1 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGC
1922736 CCACAAGTCAGTGGCACCCT
66 CCACAAGTCAGTGGCACCCT
* * ** * *
1922756 TTCAAAGCCCACAAGTCAGTGGC-CCCCTTTCAAAATCGACAAGTCAGTGGCACTCTTTTCAAAG
1 TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCA-TCCTTTCAAAG
* **
1922820 TCCACAAG-CTAGTGGCAACTAT
65 CCCACAAGTC-AGTGGC-ACCCT
*
1922842 ATTCAAAGCCCACACGAGTC-GATGGCAACACTTTTCAAAGCCCACA
1 -TTCAAAGCCCACA--AGTCAG-TGGC-ACTCTTTTCAAAGCCCACA
1922888 TAAGTTAGTG
Statistics
Matches: 624, Mismatches: 93, Indels: 30
0.84 0.12 0.04
Matches are distributed among these distances:
84 97 0.16
85 282 0.45
86 48 0.08
87 21 0.03
88 10 0.02
89 136 0.22
90 17 0.03
91 13 0.02
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.24
Consensus pattern (85 bp):
TTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGC
CCACAAGTCAGTGGCACCCT
Found at i:1922623 original size:113 final size:113
Alignment explanation
Indices: 1922068--1922887 Score: 880
Period size: 113 Copynumber: 7.1 Consensus size: 113
1922058 TGTTCATCTC
* * * *
1922068 TTCAAAGCTCACAAGTCAGTGGCACTCTTTTCAAAGCCCACAAGTCAGTAGCA-TCTTTTTAAAG
1 TTCAAAGCCCACAAGTCAGTGGCAC-CCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAG
* *
1922132 CCCACAAGTCAGTGGCACTCTTTCTAAGCCCACAAGTCAGTGGCACTCTT
65 CCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCAC-CTT
* * * * *
1922182 TTCAAAGCCCACAATTCAGTGGCATCCTTTCAAAGCCCATAAGTTAGTGGCAC-CCTTTCAAAGC
1 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGC
* ** **
1922246 CCATAAGTCAGTGGCACTTTTTTCAAAGCCCACACGAGTTGGTGGCAACTCTT
66 CCACAAGTCAGTGGCAC-CCTTTCAAAGCCCACA--AGTCAGTGGC-AC-CTT
* ** * *
1922299 TTCAAAGCCTACAAGTTTGTGGCACCCTTTCAAAGCCCACAAGTCAATGGCACTATTTTCAAAGC
1 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGC
* * * *
1922364 CCACACGAATCGGTGGCAACTCTTTTCATAGCCCACAAGTCAGTGGCATCC-T
66 CCACA--AGTCAGTGGC-AC-CCTTTCAAAGCCCACAAGTCAGTGGCA-CCTT
** * * * *
1922416 TTCAAAGCCCATGAGTCAATGGCAACTCTTTTCAAAGCCCACCAGTCAGTGGCAC-CCTTTCAAA
1 TTCAAAGCCCACAAGTCAGTGGC-AC-CCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAA
* * *
1922480 GCCCACAAGTTAGTGGCACCCTTTCAAAGCCCGCAAGTCAGTCGCACCTT
64 GCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCTT
* * *
1922530 TTCAAAGCCTACAAGTCAGTGGCACCCTTTCAAAACCCACAAGTCAATGGCACTCTTTTCAAAGC
1 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGC
** **
1922595 CCATGAGTCAACGGCACCCTTTCAAAGCCCACAAGTCAGTGGCA-CTCT
66 CCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCT-T
* * *
1922643 TTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGGCCACAAATCAGTGGCACTCTTTTCAAAGC
1 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGC
* ** * *
1922708 CCACAAGTTAGTGGCATTCTTTTAAAGCCCACAAGTCAGTGGCACCCT
66 CCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCTT
* ** * *
1922756 TTCAAAGCCCACAAGTCAGTGGCCCCCTTTCAAAATCGACAAGTCAGTGGCACTCTTTTCAAAGT
1 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGC
**
1922821 CCACAAG-CTAGTGGCAACTATATTCAAAGCCCACACGAGTC-GATGGCAACACTT
66 CCACAAGTC-AGTGGC-ACCCT-TTCAAAGCCCACA--AGTCAG-TGGC-AC-CTT
1922875 TTCAAAGCCCACA
1 TTCAAAGCCCACA
1922888 TAAGTTAGTG
Statistics
Matches: 590, Mismatches: 92, Indels: 43
0.81 0.13 0.06
Matches are distributed among these distances:
112 26 0.04
113 267 0.45
114 83 0.14
115 14 0.02
116 16 0.03
117 77 0.13
118 33 0.06
119 49 0.08
120 8 0.01
121 17 0.03
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.24
Consensus pattern (113 bp):
TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGC
CCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCTT
Found at i:1923033 original size:45 final size:47
Alignment explanation
Indices: 1922981--1923089 Score: 141
Period size: 49 Copynumber: 2.3 Consensus size: 47
1922971 GCTAGCATTA
*
1922981 AATCAGCATATTGG-CACCTTT-ATTAGCCCAATGTCGCTGGCCTTG
1 AATCAGCACATTGGCCACCTTTCATTAGCCCAATGTCGCTGGCCTTG
* *
1923026 AATCAGCACATTGGTCCACTTTTCCTTTAGCCCAATGTCGCTGGCCTTG
1 AATCAGCACATTGG-CCACCTTT-CATTAGCCCAATGTCGCTGGCCTTG
**
1923075 AATTGGCACATTGGC
1 AATCAGCACATTGGC
1923090 ATTCCTCTCA
Statistics
Matches: 55, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
45 13 0.24
47 6 0.11
48 1 0.02
49 35 0.64
ACGTcount: A:0.21, C:0.28, G:0.20, T:0.31
Consensus pattern (47 bp):
AATCAGCACATTGGCCACCTTTCATTAGCCCAATGTCGCTGGCCTTG
Found at i:1923188 original size:52 final size:52
Alignment explanation
Indices: 1923068--1923181 Score: 228
Period size: 52 Copynumber: 2.2 Consensus size: 52
1923058 CAATGTCGCT
1923068 GGCCTTGAATTGGCACATTGGCATTCCTCTCATCTCTAAGTCTAGTGTTATA
1 GGCCTTGAATTGGCACATTGGCATTCCTCTCATCTCTAAGTCTAGTGTTATA
1923120 GGCCTTGAATTGGCACATTGGCATTCCTCTCATCTCTAAGTCTAGTGTTATA
1 GGCCTTGAATTGGCACATTGGCATTCCTCTCATCTCTAAGTCTAGTGTTATA
1923172 GGCCTTGAAT
1 GGCCTTGAAT
1923182 CTGCACACGA
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 62 1.00
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.36
Consensus pattern (52 bp):
GGCCTTGAATTGGCACATTGGCATTCCTCTCATCTCTAAGTCTAGTGTTATA
Found at i:1923857 original size:20 final size:20
Alignment explanation
Indices: 1923832--1923903 Score: 92
Period size: 20 Copynumber: 3.6 Consensus size: 20
1923822 TACCTAGATT
1923832 TATCGATACATTTTTCAATG
1 TATCGATACATTTTTCAATG
* * *
1923852 TATCGATACATGTATGAATG
1 TATCGATACATTTTTCAATG
*
1923872 TATCGATACATTCTTCAA-G
1 TATCGATACATTTTTCAATG
1923891 TTATCGATACATT
1 -TATCGATACATT
1923904 CTGTCTTTTT
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
19 1 0.02
20 43 0.98
ACGTcount: A:0.32, C:0.15, G:0.12, T:0.40
Consensus pattern (20 bp):
TATCGATACATTTTTCAATG
Found at i:1927969 original size:155 final size:154
Alignment explanation
Indices: 1927687--1928004 Score: 388
Period size: 155 Copynumber: 2.1 Consensus size: 154
1927677 ACCAGGTCTA
* * * * *
1927687 CTTTTATGCCGAATGTGGGTATTTAGGACAGGTTTATCTCATCTACAATCCTTTTTAAGTCTTTT
1 CTTTTATGCCGAATGTGAGCATTTAGGACAGGTTCATCCCATCTAAAATCCTTTTTAAGTCTTTT
** * * * *
1927752 AGGGGTATCGAGCACTTTTACGTTGAAGGTATCCCCTACGGACATTTTCATAATTTTTTAGAACT
66 AGGGGTATCGAGCACTTTTACGTCAAAGGTATCCCCAAAGGACATTTTCATAATTTTCTAGAACC
* *
1927817 GAGTCTTAGGTTGTCACCGGGTCCG
131 AACTC-TAGGTTGTCACCGGGTCCG
* * *
1927842 CTTTTATGCCGAATGTGAGCATTTAGGATAGGTTCATCCCTTTTAAAATCCTTTTTAAGT-TGTT
1 CTTTTATGCCGAATGTGAGCATTTAGGACAGGTTCATCCCATCTAAAATCCTTTTTAAGTCT-TT
* * * *
1927906 TAGGGGTATCGGGTACTTTTACGTCAAAGGTATCCCCCAAAGG-TATTTTCGTAATTTTCTAGAA
65 TAGGGGTATCGAGCACTTTTACGTCAAAGGTAT-CCCCAAAGGACATTTTCATAATTTTCTAGAA
* *
1927970 CCAACTCTAGGTTGTTACCGGGTCTG
129 CCAACTCTAGGTTGTCACCGGGTCCG
*
1927996 CTTCTATGC
1 CTTTTATGC
1928005 TGAGGGTATA
Statistics
Matches: 138, Mismatches: 23, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
154 26 0.19
155 105 0.76
156 7 0.05
ACGTcount: A:0.22, C:0.19, G:0.21, T:0.38
Consensus pattern (154 bp):
CTTTTATGCCGAATGTGAGCATTTAGGACAGGTTCATCCCATCTAAAATCCTTTTTAAGTCTTTT
AGGGGTATCGAGCACTTTTACGTCAAAGGTATCCCCAAAGGACATTTTCATAATTTTCTAGAACC
AACTCTAGGTTGTCACCGGGTCCG
Found at i:1932502 original size:21 final size:21
Alignment explanation
Indices: 1932476--1932532 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
1932466 AAATTATCCA
1932476 AATGTATCGATACATTTGTAG
1 AATGTATCGATACATTTGTAG
*
1932497 AATGTATCGATACATTTGTGG
1 AATGTATCGATACATTTGTAG
1932518 AATGTATCGATACAT
1 AATGTATCGATACAT
1932533 CCTACAAATG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (21 bp):
AATGTATCGATACATTTGTAG
Found at i:1932612 original size:19 final size:19
Alignment explanation
Indices: 1932588--1932655 Score: 85
Period size: 19 Copynumber: 3.9 Consensus size: 19
1932578 AATTCAACAA
1932588 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
1932607 TTTGTATCGATAC--AA--
1 TTTGTATCGATACATAAGT
1932622 --TGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
*
1932639 ATTGTATCGATACATAA
1 TTTGTATCGATACATAA
1932656 TTAGCTACTG
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 2 0.05
19 28 0.65
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:1932627 original size:13 final size:13
Alignment explanation
Indices: 1932609--1932633 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1932599 ACATAAGTTT
1932609 TGTATCGATACAA
1 TGTATCGATACAA
1932622 TGTATCGATACA
1 TGTATCGATACA
1932634 TAAGTATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1932631 original size:32 final size:32
Alignment explanation
Indices: 1932590--1932652 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
1932580 TTCAACAATT
*
1932590 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
1932622 TGTATCGATACATAAGTATTGTATCGATACA
1 TGTATCGATACATAAGTATTGTATCGATACA
1932653 TAATTAGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCGATACAA
Found at i:1932713 original size:13 final size:13
Alignment explanation
Indices: 1932695--1932720 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1932685 CATTTTTCTG
1932695 TGTATCGATACAT
1 TGTATCGATACAT
1932708 TGTATCGATACAT
1 TGTATCGATACAT
1932721 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1932717 original size:33 final size:33
Alignment explanation
Indices: 1932675--1932741 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
1932665 GCCAAGGAAA
***
1932675 TGTATCGATACATTTTTCTGTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
*
1932708 TGTATCGATACATGGATCTTTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
1932741 T
1 T
1932742 TGGAAATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.25, C:0.15, G:0.16, T:0.43
Consensus pattern (33 bp):
TGTATCGATACATGGATCTGTGTATCGATACAT
Found at i:1935072 original size:28 final size:28
Alignment explanation
Indices: 1935036--1935112 Score: 91
Period size: 28 Copynumber: 2.8 Consensus size: 28
1935026 TTTCTTCACA
* * *
1935036 ATCGAGGATACTCCAACCTCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
1935064 ATCGGGGATACTCCAACCCCGTTACTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
*** *
1935092 CGAGGGGATACTCCAATCCCG
1 ATCGGGGATACTCCAACCCCG
1935113 ATTTTTTTTT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.23, C:0.32, G:0.19, T:0.25
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTACTTC
Found at i:1947611 original size:9 final size:9
Alignment explanation
Indices: 1947597--1947679 Score: 62
Period size: 9 Copynumber: 8.9 Consensus size: 9
1947587 TCTCTTCAAA
1947597 AAAAAAAAG
1 AAAAAAAAG
1947606 AAAAAAAAAG
1 -AAAAAAAAG
1947616 CAAAAAAAA-
1 -AAAAAAAAG
1947625 AGAAAAAAA-
1 A-AAAAAAAG
* *
1947634 AAACAAAAC
1 AAAAAAAAG
*
1947643 AAAAAAAAC
1 AAAAAAAAG
*
1947652 AAAACAAAG
1 AAAAAAAAG
*
1947661 AAAAAGAGAG
1 AAAAA-AAAG
1947671 AAAAGAAAA
1 AAAA-AAAA
1947680 AGAACCTGCT
Statistics
Matches: 61, Mismatches: 8, Indels: 8
0.79 0.10 0.10
Matches are distributed among these distances:
8 7 0.11
9 27 0.44
10 26 0.43
11 1 0.02
ACGTcount: A:0.84, C:0.06, G:0.10, T:0.00
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:1947611 original size:10 final size:10
Alignment explanation
Indices: 1947596--1947683 Score: 86
Period size: 11 Copynumber: 8.2 Consensus size: 10
1947586 TTCTCTTCAA
1947596 AAAAAAAAAG
1 AAAAAAAAAG
1947606 AAAAAAAAAG
1 AAAAAAAAAG
1947616 CAAAAAAAAAG
1 -AAAAAAAAAG
*
1947627 AAAAAAAAAAC
1 -AAAAAAAAAG
*
1947638 AAAACAAAAAA
1 AAAA-AAAAAG
1947649 AACAAAACAAAG
1 AA-AAAA-AAAG
* *
1947661 AAAAAGAGAG
1 AAAAAAAAAG
1947671 AAAAGAAAAAG
1 AAAA-AAAAAG
1947682 AA
1 AA
1947684 CCTGCTTAAG
Statistics
Matches: 65, Mismatches: 8, Indels: 9
0.79 0.10 0.11
Matches are distributed among these distances:
10 21 0.32
11 37 0.57
12 7 0.11
ACGTcount: A:0.84, C:0.06, G:0.10, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:1947614 original size:15 final size:15
Alignment explanation
Indices: 1947594--1947683 Score: 67
Period size: 15 Copynumber: 5.9 Consensus size: 15
1947584 CCTTCTCTTC
1947594 AAAAAAAAAAAGAAA
1 AAAAAAAAAAAGAAA
1947609 AAAAAAGCAAAAA-AAA
1 AAAAAA--AAAAAGAAA
*
1947625 AGAAAAAAAAAA-CAA
1 A-AAAAAAAAAAGAAA
* *
1947640 AACAAAAAAAACAAA
1 AAAAAAAAAAAGAAA
* * *
1947655 ACAAAGAAAAAGAGA
1 AAAAAAAAAAAGAAA
* *
1947670 GAAAAGAAAAAGAA
1 AAAAAAAAAAAGAA
1947684 CCTGCTTAAG
Statistics
Matches: 60, Mismatches: 11, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
14 9 0.15
15 37 0.62
16 4 0.07
17 10 0.17
ACGTcount: A:0.84, C:0.06, G:0.10, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAAAGAAA
Found at i:1947621 original size:21 final size:20
Alignment explanation
Indices: 1947596--1947667 Score: 92
Period size: 21 Copynumber: 3.5 Consensus size: 20
1947586 TTCTCTTCAA
1947596 AAAAAAAAAGAAAAAAAAAGC
1 AAAAAAAAAGAAAAAAAAA-C
1947617 AAAAAAAAAGAAAAAAAAAAC
1 AAAAAAAAAG-AAAAAAAAAC
* *
1947638 AAAACAAAA-AAAACAAAAC
1 AAAAAAAAAGAAAAAAAAAC
*
1947657 AAAGAAAAAGA
1 AAAAAAAAAGA
1947668 GAGAAAAGAA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
19 16 0.36
20 1 0.02
21 19 0.42
22 9 0.20
ACGTcount: A:0.86, C:0.07, G:0.07, T:0.00
Consensus pattern (20 bp):
AAAAAAAAAGAAAAAAAAAC
Found at i:1947680 original size:1 final size:1
Alignment explanation
Indices: 1947594--1947665 Score: 63
Period size: 1 Copynumber: 72.0 Consensus size: 1
1947584 CCTTCTCTTC
* ** * * * * *
1947594 AAAAAAAAAAAGAAAAAAAAAGCAAAAAAAAAGAAAAAAAAAACAAAACAAAAAAAACAAAACAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
*
1947659 AGAAAAA
1 AAAAAAA
1947666 GAGAGAAAAG
Statistics
Matches: 54, Mismatches: 17, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
1 54 1.00
ACGTcount: A:0.88, C:0.07, G:0.06, T:0.00
Consensus pattern (1 bp):
A
Found at i:1948734 original size:55 final size:55
Alignment explanation
Indices: 1948649--1949433 Score: 1298
Period size: 55 Copynumber: 14.3 Consensus size: 55
1948639 TCCGCTTTTT
*
1948649 AGTCCTCAAAGAGCAGGACACCTCTT-AAAGCCCACACAAGTTGGTGGCACCTTT-C
1 AGTCCTCAAAGAGCAGGACACCT-TTCAAAGCCCACACAAGTTGGTGGCA-TTTTCC
* **
1948704 GGTCCTCAAAGAGCAGGACACCTCTT-AAAGCCCACACAAGTTGGTGGCACCCTT-C
1 AGTCCTCAAAGAGCAGGACACCT-TTCAAAGCCCACACAAGTTGGTGGCA-TTTTCC
* *
1948759 AGTCCCCGAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
1948814 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
1948869 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
*
1948924 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGAATTTTCC
1 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
*
1948979 AGTCCTCAAAGAGCAGGACACCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
*
1949034 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCTACACAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
*
1949089 AGTCCTCAAAGAGCAGGACACCTCTCAAAGCCCACACAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
*
1949144 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCTACACAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
* *
1949199 AGTCCTCAAAGAGCAGGACACCTCTCAAAGCCCACACAAGTTGGTGGCATTTTCT
1 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
1949254 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
*
1949309 AGTCCTCAAAGAGCAGGACACCTCTT-AAAGCCCACACAAGTTGGTGGCACCTTT-C
1 AGTCCTCAAAGAGCAGGACACCT-TTCAAAGCCCACACAAGTTGGTGGCA-TTTTCC
* * *
1949364 AGTCCTCAAAGAG-AGGACGCCTTTCAAAGCCCACACGAGTTGGTGGCACTTTT-T
1 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCC
1949418 AGTCCTCAAAGAGCAG
1 AGTCCTCAAAGAGCAG
1949434 AATACACTTT
Statistics
Matches: 696, Mismatches: 28, Indels: 12
0.95 0.04 0.02
Matches are distributed among these distances:
53 2 0.00
54 51 0.07
55 638 0.92
56 5 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (55 bp):
AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
Found at i:1950192 original size:21 final size:21
Alignment explanation
Indices: 1950166--1950222 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
1950156 AAATTATCCA
1950166 AATGTATCGATACATTTGTAG
1 AATGTATCGATACATTTGTAG
*
1950187 AATGTATCGATACATTTGTGG
1 AATGTATCGATACATTTGTAG
1950208 AATGTATCGATACAT
1 AATGTATCGATACAT
1950223 CCTACAAATG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (21 bp):
AATGTATCGATACATTTGTAG
Found at i:1950302 original size:19 final size:19
Alignment explanation
Indices: 1950278--1950345 Score: 76
Period size: 19 Copynumber: 3.9 Consensus size: 19
1950268 AATTCAACAA
1950278 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
1950297 TTTGTATCGATAC--AA--
1 TTTGTATCGATACATAAGT
1950312 --TGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
* *
1950329 ATTGTTTCGATACATAA
1 TTTGTATCGATACATAA
1950346 TTAGCTACTG
Statistics
Matches: 42, Mismatches: 1, Indels: 12
0.76 0.02 0.22
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 2 0.05
19 27 0.64
ACGTcount: A:0.34, C:0.12, G:0.15, T:0.40
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:1950317 original size:13 final size:13
Alignment explanation
Indices: 1950299--1950323 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1950289 ACATAAGTTT
1950299 TGTATCGATACAA
1 TGTATCGATACAA
1950312 TGTATCGATACA
1 TGTATCGATACA
1950324 TAAGTATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1950321 original size:32 final size:32
Alignment explanation
Indices: 1950280--1950342 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
1950270 TTCAACAATT
*
1950280 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
*
1950312 TGTATCGATACATAAGTATTGTTTCGATACA
1 TGTATCGATACATAAGTATTGTATCGATACA
1950343 TAATTAGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.33, C:0.13, G:0.16, T:0.38
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCGATACAA
Found at i:1950403 original size:13 final size:13
Alignment explanation
Indices: 1950385--1950410 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1950375 CATTTTTCTG
1950385 TGTATCGATACAT
1 TGTATCGATACAT
1950398 TGTATCGATACAT
1 TGTATCGATACAT
1950411 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1950406 original size:33 final size:33
Alignment explanation
Indices: 1950365--1950431 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
1950355 GTCAAGGAAA
***
1950365 TGTATCGATACATTTTTCTGTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
*
1950398 TGTATCGATACATGGATCTTTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
1950431 T
1 T
1950432 TGGAAATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.25, C:0.15, G:0.16, T:0.43
Consensus pattern (33 bp):
TGTATCGATACATGGATCTGTGTATCGATACAT
Found at i:1952901 original size:28 final size:28
Alignment explanation
Indices: 1952865--1952941 Score: 91
Period size: 28 Copynumber: 2.8 Consensus size: 28
1952855 TTTCTTCACA
* * *
1952865 ATCGAGGATACTCCAACCTCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
1952893 ATCGGGGATACTCCAACCCCGTTACTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
*** *
1952921 CGAGGGGATACTCCAATCCCG
1 ATCGGGGATACTCCAACCCCG
1952942 ATTTTTTTTT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.23, C:0.32, G:0.19, T:0.25
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTACTTC
Found at i:1954341 original size:20 final size:20
Alignment explanation
Indices: 1954298--1954357 Score: 84
Period size: 20 Copynumber: 3.0 Consensus size: 20
1954288 GTCATGGTCC
***
1954298 TGTATCGATACATTTCAAACA
1 TGTATCGATACA-TTCACTTA
1954319 TGTATCGATACATTCACTTA
1 TGTATCGATACATTCACTTA
1954339 TGTATCGATACATTCACTT
1 TGTATCGATACATTCACTT
1954358 GTTGTATCAA
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
20 24 0.67
21 12 0.33
ACGTcount: A:0.32, C:0.20, G:0.10, T:0.38
Consensus pattern (20 bp):
TGTATCGATACATTCACTTA
Found at i:1955158 original size:48 final size:47
Alignment explanation
Indices: 1954992--1955173 Score: 141
Period size: 48 Copynumber: 3.8 Consensus size: 47
1954982 GTGAAGATCT
* * * * **
1954992 CAAAAGGAATATACTTCTCTATCT-AAACTTTAACTTTAAAAGCTTAA
1 CAAAAGTAAAATACTCCTCTAT-TGAAGCTTTAACTTTAAAAATTTAA
* * ** * * *
1955039 CAAATGTGAAAATACTCCTCCATCAAAGTTTTAACTTTAAAATTTTAC
1 CAAAAGT-AAAATACTCCTCTATTGAAGCTTTAACTTTAAAAATTTAA
** * * *
1955087 CAAACCTAAATTGCTCCTCTATTGAAGCTTTAACTTTAAAAATTTAT
1 CAAAAGTAAAATACTCCTCTATTGAAGCTTTAACTTTAAAAATTTAA
* * *
1955134 CAAAAGTAAAAATACTCCTTTATTGTAGCTTCAACTTTAA
1 CAAAAGT-AAAATACTCCTCTATTGAAGCTTTAACTTTAA
1955174 CAATAAACAT
Statistics
Matches: 104, Mismatches: 28, Indels: 5
0.76 0.20 0.04
Matches are distributed among these distances:
47 42 0.40
48 62 0.60
ACGTcount: A:0.40, C:0.18, G:0.07, T:0.36
Consensus pattern (47 bp):
CAAAAGTAAAATACTCCTCTATTGAAGCTTTAACTTTAAAAATTTAA
Found at i:1956392 original size:22 final size:22
Alignment explanation
Indices: 1956364--1956409 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
1956354 AATTAGCACA
1956364 ATTAACAATTCCAAGCCTTCAT
1 ATTAACAATTCCAAGCCTTCAT
1956386 ATTAACAATTCCAAGCCTTCAT
1 ATTAACAATTCCAAGCCTTCAT
1956408 AT
1 AT
1956410 GTTTATAGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.37, C:0.26, G:0.04, T:0.33
Consensus pattern (22 bp):
ATTAACAATTCCAAGCCTTCAT
Found at i:1957489 original size:18 final size:16
Alignment explanation
Indices: 1957458--1957493 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 16
1957448 CATAGCCAAC
1957458 AATTGAAAAAAAAAAT
1 AATTGAAAAAAAAAAT
1957474 AATTGAAAAAATAAAA-
1 AATTGAAAAAA-AAAAT
1957490 AATT
1 AATT
1957494 AAGAGTAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 15 0.79
17 4 0.21
ACGTcount: A:0.72, C:0.00, G:0.06, T:0.22
Consensus pattern (16 bp):
AATTGAAAAAAAAAAT
Found at i:1959249 original size:20 final size:20
Alignment explanation
Indices: 1959217--1959359 Score: 75
Period size: 20 Copynumber: 7.2 Consensus size: 20
1959207 AATTGATAAA
*
1959217 TAATTACATAATTTACCTTT
1 TAATTAAATAATTTACCTTT
* *
1959237 TAGTTAAATAATTTACTTTT
1 TAATTAAATAATTTACCTTT
1959257 TAATT--A-AA-TTACCTATT
1 TAATTAAATAATTTACCT-TT
*
1959274 AAATTATTAATTAATTTACCTTT
1 TAATTA--AA-TAATTTACCTTT
* * * * *
1959297 TAACTT-AAT-GTTGATGCATA
1 TAA-TTAAATAATTTA-CCTTT
*
1959317 TAATTAAA-AAATTACCATTT
1 TAATTAAATAATTTACC-TTT
*
1959337 TAATTAAATAATTTAGCTTT
1 TAATTAAATAATTTACCTTT
1959357 TAA
1 TAA
1959360 ATTATTAATT
Statistics
Matches: 89, Mismatches: 20, Indels: 28
0.65 0.15 0.20
Matches are distributed among these distances:
16 5 0.06
17 8 0.09
18 1 0.01
19 6 0.07
20 46 0.52
21 9 0.10
23 6 0.07
24 8 0.09
ACGTcount: A:0.40, C:0.09, G:0.03, T:0.48
Consensus pattern (20 bp):
TAATTAAATAATTTACCTTT
Found at i:1962622 original size:52 final size:52
Alignment explanation
Indices: 1962479--1962607 Score: 249
Period size: 52 Copynumber: 2.5 Consensus size: 52
1962469 CGAAATATGA
1962479 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
*
1962531 AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
1962583 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
1962608 AAGATCAGTG
Statistics
Matches: 76, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
52 76 1.00
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.35
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
Found at i:1962720 original size:13 final size:13
Alignment explanation
Indices: 1962702--1962726 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1962692 ACAAAACTTA
1962702 TGTATCGATACAT
1 TGTATCGATACAT
1962715 TGTATCGATACA
1 TGTATCGATACA
1962727 ATACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1962720 original size:32 final size:33
Alignment explanation
Indices: 1962681--1962746 Score: 116
Period size: 32 Copynumber: 2.0 Consensus size: 33
1962671 ATTAGCTTAT
1962681 ATTGTATCGATACAAAAC-TTATGTATCGATAC
1 ATTGTATCGATACAAAACTTTATGTATCGATAC
*
1962713 ATTGTATCGATACAATACTTTATGTATCGATAC
1 ATTGTATCGATACAAAACTTTATGTATCGATAC
1962746 A
1 A
1962747 AATCATTGAA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 17 0.53
33 15 0.47
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.36
Consensus pattern (33 bp):
ATTGTATCGATACAAAACTTTATGTATCGATAC
Found at i:1963567 original size:49 final size:49
Alignment explanation
Indices: 1963487--1963856 Score: 432
Period size: 49 Copynumber: 7.7 Consensus size: 49
1963477 AATGTGCTAC
* * *
1963487 TTCATGGCCAGCGACATT-GATCTCAAAGATGACGATGCCAATATGCTGA
1 TTCAAGGCCAGCGATATTGGA-CTTAAAGATGACGATGCCAATATGCTGA
* * ** * *
1963536 TTCAAAGCCAACGATACCGGACTTAAAGATGAAGATGCCAATGTGCTGA
1 TTCAAGGCCAGCGATATTGGACTTAAAGATGACGATGCCAATATGCTGA
* ** *
1963585 TTCAAGGCCAACGACGTTGGTCTTAAAGATGAC-AGTGCCAATATGCTGA
1 TTCAAGGCCAGCGATATTGGACTTAAAGATGACGA-TGCCAATATGCTGA
* * *
1963634 TTCAAGGCCAGCGATATTGGACTTAAAGGTGAAGATGCCAATGTGCTGA
1 TTCAAGGCCAGCGATATTGGACTTAAAGATGACGATGCCAATATGCTGA
* * *
1963683 TTCAAGGCCAGCGACATTGGTCTTAAAGATGACGGTGCCAATATGCTGA
1 TTCAAGGCCAGCGATATTGGACTTAAAGATGACGATGCCAATATGCTGA
* * *
1963732 TTCAAGGCCAGCGATATTGGACTT-AA-A-G--G-TGCCAATGTGTTGG
1 TTCAAGGCCAGCGATATTGGACTTAAAGATGACGATGCCAATATGCTGA
* *
1963775 TTCAAGGCCAGCGACATTGGACTTAAAGATGACGGTGCCAATATGCTGA
1 TTCAAGGCCAGCGATATTGGACTTAAAGATGACGATGCCAATATGCTGA
* *
1963824 TTCAAGGCCAGCGATATTGGATTTTAAGATGAC
1 TTCAAGGCCAGCGATATTGGACTTAAAGATGAC
1963857 AAAAGTGGTG
Statistics
Matches: 270, Mismatches: 42, Indels: 18
0.82 0.13 0.05
Matches are distributed among these distances:
43 34 0.13
44 3 0.01
45 1 0.00
46 2 0.01
47 1 0.00
48 4 0.01
49 222 0.82
50 3 0.01
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.25
Consensus pattern (49 bp):
TTCAAGGCCAGCGATATTGGACTTAAAGATGACGATGCCAATATGCTGA
Found at i:1963624 original size:98 final size:98
Alignment explanation
Indices: 1963444--1963855 Score: 550
Period size: 98 Copynumber: 4.2 Consensus size: 98
1963434 ATATGCGGCT
* ** * * *
1963444 AGCGATATTGGGCTCGAAGATGCGAAGAATGACAATGTGCT-ACTTCATGGCCAGCGACATTGAT
1 AGCGATATTGGACTTAAAGAT--GAAG-ATGCCAATGTGCTGA-TTCAAGGCCAGCGACATTGGT
* * *
1963508 CTCAAAGATGACGATGCCAATATGCTGATTCAAAGCC
62 CTTAAAGATGACGGTGCCAATATGCTGATTCAAGGCC
* ** * *
1963545 AACGATACCGGACTTAAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAACGACGTTGGTCTTA
1 AGCGATATTGGACTTAAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTA
*
1963610 AAGATGACAGTGCCAATATGCTGATTCAAGGCC
66 AAGATGACGGTGCCAATATGCTGATTCAAGGCC
*
1963643 AGCGATATTGGACTTAAAGGTGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTA
1 AGCGATATTGGACTTAAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTA
1963708 AAGATGACGGTGCCAATATGCTGATTCAAGGCC
66 AAGATGACGGTGCCAATATGCTGATTCAAGGCC
* * *
1963741 AGCGATATTGGACTT-AA-A-G--G-TGCCAATGTGTTGGTTCAAGGCCAGCGACATTGGACTTA
1 AGCGATATTGGACTTAAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTA
1963800 AAGATGACGGTGCCAATATGCTGATTCAAGGCC
66 AAGATGACGGTGCCAATATGCTGATTCAAGGCC
* *
1963833 AGCGATATTGGATTTTAAGATGA
1 AGCGATATTGGACTTAAAGATGA
1963856 CAAAAGTGGT
Statistics
Matches: 279, Mismatches: 27, Indels: 15
0.87 0.08 0.05
Matches are distributed among these distances:
92 83 0.30
93 3 0.01
94 1 0.00
95 2 0.01
97 2 0.01
98 168 0.60
99 5 0.02
101 15 0.05
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24
Consensus pattern (98 bp):
AGCGATATTGGACTTAAAGATGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTA
AAGATGACGGTGCCAATATGCTGATTCAAGGCC
Found at i:1963760 original size:22 final size:22
Alignment explanation
Indices: 1963735--1963802 Score: 52
Period size: 22 Copynumber: 3.1 Consensus size: 22
1963725 ATGCTGATTC
1963735 AAGGCCAGCGATATTGGACTTA
1 AAGGCCAGCGATATTGGACTTA
** * *
1963757 AAGGTGCCAATG-TGTTGG--TTC
1 AA-G-GCCAGCGATATTGGACTTA
*
1963778 AAGGCCAGCGACATTGGACTTA
1 AAGGCCAGCGATATTGGACTTA
1963800 AAG
1 AAG
1963803 ATGACGGTGC
Statistics
Matches: 32, Mismatches: 9, Indels: 10
0.63 0.18 0.20
Matches are distributed among these distances:
19 5 0.16
20 5 0.16
21 4 0.12
22 7 0.22
23 6 0.19
24 5 0.16
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (22 bp):
AAGGCCAGCGATATTGGACTTA
Found at i:1964026 original size:29 final size:29
Alignment explanation
Indices: 1963909--1964171 Score: 304
Period size: 29 Copynumber: 9.0 Consensus size: 29
1963899 CTTTTCAAAA
*
1963909 AAAAG-GTGCCACTAACTTGTGTTGGCTTTG
1 AAAAGAGTGCCACTGACTTGTG--GGCTTTG
* * * *
1963939 AATAGA-TGCCACT-A-ATATAGGCTTTG
1 AAAAGAGTGCCACTGACTTGTGGGCTTTG
* *
1963965 AAAAGGGTTGCCACCGACTCGTGTGGGCTTTG
1 AAAAGAG-TGCCACTGACT--TGTGGGCTTTG
1963997 AAAAGAGTGCCACTGACTTGTGGGCTTTG
1 AAAAGAGTGCCACTGACTTGTGGGCTTTG
*
1964026 -AAAGGGTGCCACTGACTTGTGGGCTTTG
1 AAAAGAGTGCCACTGACTTGTGGGCTTTG
* * *
1964054 GAAAGGGCTGCCACCGACTCGTGTGGGCTTTG
1 AAAAGAG-TGCCACTGACT--TGTGGGCTTTG
1964086 AAAAGAGTGCCACTGACTTGTGGGCTTTG
1 AAAAGAGTGCCACTGACTTGTGGGCTTTG
1964115 AAAAGAGTGCCACTGACTTGTGGGCTTTG
1 AAAAGAGTGCCACTGACTTGTGGGCTTTG
1964144 AAAA-AGATGCCACTGACTTGTGGGCTTT
1 AAAAGAG-TGCCACTGACTTGTGGGCTTT
1964172 TGAAGGGTGA
Statistics
Matches: 204, Mismatches: 17, Indels: 25
0.83 0.07 0.10
Matches are distributed among these distances:
26 11 0.05
28 37 0.18
29 84 0.41
30 21 0.10
31 20 0.10
32 31 0.15
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (29 bp):
AAAAGAGTGCCACTGACTTGTGGGCTTTG
Found at i:1964059 original size:89 final size:90
Alignment explanation
Indices: 1963909--1964171 Score: 353
Period size: 89 Copynumber: 3.0 Consensus size: 90
1963899 CTTTTCAAAA
* * * * *
1963909 AAAAG-GTGCCACTAACTTGTGTTGGCTTTGAATAGA-TGCCACT-A-ATATAGGCTTTGAAAAG
1 AAAAGAGTGCCACTGACTTGTG--GGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAG
*
1963970 GGTTGCCACCGACTCGTGTGGGCTTTG
64 GGCTGCCACCGACTCGTGTGGGCTTTG
* *
1963997 AAAAGAGTGCCACTGACTTGTGGGCTTTG-AAAGGGTGCCACTGACTTGTGGGCTTTGGAAAGGG
1 AAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGGG
1964061 CTGCCACCGACTCGTGTGGGCTTTG
66 CTGCCACCGACTCGTGTGGGCTTTG
*
1964086 AAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAA-AG
1 AAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGGG
* *
1964150 ATGCCACTGACT--TGTGGGCTTT
66 CTGCCACCGACTCGTGTGGGCTTT
1964172 TGAAGGGTGA
Statistics
Matches: 157, Mismatches: 13, Indels: 11
0.87 0.07 0.06
Matches are distributed among these distances:
86 3 0.02
87 24 0.15
88 6 0.04
89 94 0.60
90 30 0.19
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (90 bp):
AAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGGG
CTGCCACCGACTCGTGTGGGCTTTG
Found at i:1965629 original size:1 final size:1
Alignment explanation
Indices: 1965618--1965687 Score: 50
Period size: 1 Copynumber: 70.0 Consensus size: 1
1965608 GTTGTTGTTG
* * * * * * * * **
1965618 TTTTTTCTTTTTTTGTTTTTTTTTTGTTTTTTTCTTCTTTTCTTTTGTTTATTTCGTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1965683 TTTTT
1 TTTTT
1965688 GTGGAGGACG
Statistics
Matches: 50, Mismatches: 19, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
1 50 1.00
ACGTcount: A:0.01, C:0.07, G:0.06, T:0.86
Consensus pattern (1 bp):
T
Found at i:1965642 original size:21 final size:21
Alignment explanation
Indices: 1965594--1965685 Score: 71
Period size: 22 Copynumber: 4.4 Consensus size: 21
1965584 ATCCGGACCC
* * *
1965594 TTTTTGTTGTTGTTGTTGTTGT
1 TTTTTTTTGTT-TTTTTGTTTT
* *
1965616 TGTTTTTTCTTTTTTTGTTT-
1 TTTTTTTTGTTTTTTTGTTTT
* *
1965636 -TTTTTTTGTTTTTTTCTTCT
1 TTTTTTTTGTTTTTTTGTTTT
* *
1965656 TTTCTTTTGTTTATTTCGTTTT
1 TTTTTTTTGTTT-TTTTGTTTT
1965678 TTTTTTTT
1 TTTTTTTT
1965686 TTGTGGAGGA
Statistics
Matches: 53, Mismatches: 14, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
19 15 0.28
21 17 0.32
22 21 0.40
ACGTcount: A:0.01, C:0.05, G:0.12, T:0.82
Consensus pattern (21 bp):
TTTTTTTTGTTTTTTTGTTTT
Done.