Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold407
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4418299
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 127125 characters in sequence are not A, C, G, or T
File 17 of 28
Found at i:2417739 original size:15 final size:16
Alignment explanation
Indices: 2417711--2417741 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
2417701 GGGGGCTTGA
2417711 AAAAAAAAGAGGGAAG
1 AAAAAAAAGAGGGAAG
2417727 AAAAAAAAG-GGGAAG
1 AAAAAAAAGAGGGAAG
2417742 CTTTCAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (16 bp):
AAAAAAAAGAGGGAAG
Found at i:2418079 original size:3 final size:3
Alignment explanation
Indices: 2418071--2418119 Score: 64
Period size: 3 Copynumber: 16.3 Consensus size: 3
2418061 GTTTTCGGGT
* *
2418071 GAA GAA GAAA GAA GAA -AG GAA GAA GAA TAA GAA GAA GAA GAA GAA
1 GAA GAA G-AA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
2418116 GAA G
1 GAA G
2418120 GAAAAAAATA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
2 1 0.03
3 36 0.90
4 3 0.08
ACGTcount: A:0.65, C:0.00, G:0.33, T:0.02
Consensus pattern (3 bp):
GAA
Found at i:2425758 original size:235 final size:234
Alignment explanation
Indices: 2425341--2425792 Score: 755
Period size: 235 Copynumber: 1.9 Consensus size: 234
2425331 AATTATTAGT
2425341 TTTTGAGAAACTTGAATATCACATCTTTTTAACCTAAAAGCTTACAAAAAATATATTTTTTTAAT
1 TTTTGAGAAACTTGAATATCACATCTTTTTAACCTAAAAGCTTACAAAAAATATATTTTTTTAAT
*
2425406 AAAGCAATTGTTTTGAGAAACTTAAAAAGGTGTCATGAAAAGAGATAAGGGTTTTCAAATTAAAG
66 AAAGCAATTGTTTTGAGAAACTTAAAAAGGTGTCATAAAAAGAGATAAGGGTTTTCAAATTAAAG
*
2425471 GGCACCAAATTGGGATTAGATGACATTGGCATTTACATCATTTCATATGCATTTGCTAC-TTTAT
131 GGCACCAAATTGGGATTAGATGACATTGGCATTTACATCATTTCACATGCATTTGC-ACATTTAT
*
2425535 TAATGCTTACATTTGCATCATTTATGTATATTTGCATTTG
195 TAATGCTTACAATTGCATCATTTATGTATATTTGCATTTG
*
2425575 TTTTGAGAAACTTGAATATCACATCTTTTTAACCTAGAAGCTTACAAAAAA-ATATGGTTTTTTA
1 TTTTGAGAAACTTGAATATCACATCTTTTTAACCTAAAAGCTTACAAAAAATATAT--TTTTTTA
* * * *
2425639 ATAAAGCAATTGTTTTGAGAAACTTGAAAAGGTGTTATAAAAAGAGATAAGGGTTTTTAGATTAA
64 ATAAAGCAATTGTTTTGAGAAACTTAAAAAGGTGTCATAAAAAGAGATAAGGGTTTTCAAATTAA
* * *
2425704 AGGGCACCAAATTGGGATTAGATGACATTGGCATTTGCATTATTTCACATGCATTTGCCCATTTA
129 AGGGCACCAAATTGGGATTAGATGACATTGGCATTTACATCATTTCACATGCATTTGCACATTTA
*
2425769 TTTATGCTTACAATTGCATCATTT
194 TTAATGCTTACAATTGCATCATTT
2425793 CACGCACATT
Statistics
Matches: 203, Mismatches: 12, Indels: 5
0.92 0.05 0.02
Matches are distributed among these distances:
233 4 0.02
234 51 0.25
235 148 0.73
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.37
Consensus pattern (234 bp):
TTTTGAGAAACTTGAATATCACATCTTTTTAACCTAAAAGCTTACAAAAAATATATTTTTTTAAT
AAAGCAATTGTTTTGAGAAACTTAAAAAGGTGTCATAAAAAGAGATAAGGGTTTTCAAATTAAAG
GGCACCAAATTGGGATTAGATGACATTGGCATTTACATCATTTCACATGCATTTGCACATTTATT
AATGCTTACAATTGCATCATTTATGTATATTTGCATTTG
Found at i:2425890 original size:44 final size:43
Alignment explanation
Indices: 2425721--2425891 Score: 141
Period size: 44 Copynumber: 3.9 Consensus size: 43
2425711 CAAATTGGGA
* *
2425721 TTAGATGACATTGGCATTTGCATTATTTCACATGCATTTGCCCAT
1 TTAGATGACATTGGCATTTGCATCATTTCACACGCATTTG--CAT
* * * * * *
2425766 TTATTTATG-C-TT-ACAATTGCATCATTTCACGCACATTTTCACT
1 TTA--GATGACATTGGCATTTGCATCATTTCACACGCATTTGCA-T
* * *
2425809 TTAGATAACATTAGCATTTGCATCATTTCATACGCATTTGCATT
1 TTAGATGACATTGGCATTTGCATCATTTCACACGCATTTGCA-T
* * *
2425853 TTAGTTGACATTGGCATTTGCATCATTTAACATGCATTT
1 TTAGATGACATTGGCATTTGCATCATTTCACACGCATTT
2425892 TCCCTTTTAT
Statistics
Matches: 97, Mismatches: 23, Indels: 13
0.73 0.17 0.10
Matches are distributed among these distances:
41 2 0.02
42 3 0.03
43 6 0.06
44 77 0.79
45 5 0.05
46 1 0.01
47 3 0.03
ACGTcount: A:0.26, C:0.19, G:0.12, T:0.42
Consensus pattern (43 bp):
TTAGATGACATTGGCATTTGCATCATTTCACACGCATTTGCAT
Found at i:2425968 original size:132 final size:132
Alignment explanation
Indices: 2425721--2425970 Score: 376
Period size: 132 Copynumber: 1.9 Consensus size: 132
2425711 CAAATTGGGA
* *
2425721 TTAGATGACATTGGCATTTGCATTATTTCACATGCATTTGCCCATTTATTTATGCTTACAATTGC
1 TTAGATGACATTGGCATTTGCATCATTTAACATGCATTTGCCCATTTATTTATGCTTACAATTGC
* * *
2425786 ATCATTTCACGCACATTTTCACTTTAGATAACATTAGCATTTGCATCATTTCATACGCATTTGCA
66 ATCATTTCACGAACATTTGCACTTTAGATAACATTAGCATTTGCACCATTTCATACGCATTTGCA
2425851 TT
131 TT
* * *
2425853 TTAGTTGACATTGGCATTTGCATCATTTAACATGCATTTTCCCTTTTATTTATGCTTGA-AATTG
1 TTAGATGACATTGGCATTTGCATCATTTAACATGCATTTGCCCATTTATTTATGCTT-ACAATTG
* * * *
2425917 CATCGTTTCATGAACATTTGCACTTTAGATAACATTGGCATTTGCGCCATTTCA
65 CATCATTTCACGAACATTTGCACTTTAGATAACATTAGCATTTGCACCATTTCA
2425971 CGTGTGAAAG
Statistics
Matches: 105, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
132 104 0.99
133 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.13, T:0.42
Consensus pattern (132 bp):
TTAGATGACATTGGCATTTGCATCATTTAACATGCATTTGCCCATTTATTTATGCTTACAATTGC
ATCATTTCACGAACATTTGCACTTTAGATAACATTAGCATTTGCACCATTTCATACGCATTTGCA
TT
Found at i:2426757 original size:13 final size:13
Alignment explanation
Indices: 2426739--2426764 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2426729 AATTTTTTTG
2426739 TGTATCGATACAT
1 TGTATCGATACAT
2426752 TGTATCGATACAT
1 TGTATCGATACAT
2426765 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2429357 original size:13 final size:13
Alignment explanation
Indices: 2429339--2429376 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
2429329 ATAATCCCCC
2429339 TGTATCGATACAG
1 TGTATCGATACAG
*
2429352 TGTATCGATACAT
1 TGTATCGATACAG
2429365 TGTATCGATACA
1 TGTATCGATACA
2429377 AAGAAAAATG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:2435571 original size:13 final size:13
Alignment explanation
Indices: 2435553--2435578 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2435543 AATTTTTTTG
2435553 TGTATCGATACAT
1 TGTATCGATACAT
2435566 TGTATCGATACAT
1 TGTATCGATACAT
2435579 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2436104 original size:88 final size:87
Alignment explanation
Indices: 2435982--2436151 Score: 241
Period size: 88 Copynumber: 1.9 Consensus size: 87
2435972 GATACTTGAA
* * * * *
2435982 TTGCATCGTTTCACGCACATGTTCATTTTAGATAACATTAGTATTTGCATTATTTTAAATGCATT
1 TTGCATCGTTTCACGCACATCTACACTTTAGATAACATTAGTATTTGCATCATTTCAAATGCATT
**
2436047 TGCCTTTTTATTGATGCTCACAT
66 T-CCACTTTATTGATGCTCACAT
* * *
2436070 TTGCATCGTTTCATGCACATCTACACTTTGGATAACATTAGTATTTGCATCATTTCATATGCATT
1 TTGCATCGTTTCACGCACATCTACACTTTAGATAACATTAGTATTTGCATCATTTCAAATGCATT
2436135 TCCACTTTATTGATGCT
66 TCCACTTTATTGATGCT
2436152 TAAATTTACA
Statistics
Matches: 72, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
87 14 0.19
88 58 0.81
ACGTcount: A:0.25, C:0.19, G:0.12, T:0.44
Consensus pattern (87 bp):
TTGCATCGTTTCACGCACATCTACACTTTAGATAACATTAGTATTTGCATCATTTCAAATGCATT
TCCACTTTATTGATGCTCACAT
Found at i:2436884 original size:62 final size:62
Alignment explanation
Indices: 2436815--2436959 Score: 272
Period size: 62 Copynumber: 2.3 Consensus size: 62
2436805 ATTACTTTCA
*
2436815 TTAGTTTGTTTTGGTTATTGATGGGAAATTTTAGAAACCATATATTTTCCATTAGTTGTTTT
1 TTAGTTTGTTTTGGTTATTGATGGGAAATTTTAGAAACCATATATTTTCCATTAGTTGTTCT
*
2436877 TTAGTTTGTTTTGGTTATTGATGGGAAATTTTAGAAACCATATATTTTCCATTGGTTGTTCT
1 TTAGTTTGTTTTGGTTATTGATGGGAAATTTTAGAAACCATATATTTTCCATTAGTTGTTCT
2436939 TTAGTTTGTTTTGGTTATTGA
1 TTAGTTTGTTTTGGTTATTGA
2436960 AACAACATAT
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 81 1.00
ACGTcount: A:0.22, C:0.06, G:0.19, T:0.52
Consensus pattern (62 bp):
TTAGTTTGTTTTGGTTATTGATGGGAAATTTTAGAAACCATATATTTTCCATTAGTTGTTCT
Found at i:2437058 original size:76 final size:76
Alignment explanation
Indices: 2436959--2437166 Score: 229
Period size: 76 Copynumber: 2.7 Consensus size: 76
2436949 TTGGTTATTG
*
2436959 AAACAACATATTCCCTATCATGTTCTTCTTCTTCAACTTATTTTCAGTTTGTTTCAGTTGTTAAT
1 AAACAACATATTCCCTATCATGTTCTTCTTCTTCAACTTATTATCAGTTTGTTTCAGTTGTTAAT
2437024 AAAAATTAAAA
66 AAAAATTAAAA
* * * * * ** *
2437035 AAACAACATATTTCGC-ATTATGTTCTTTTTCTTCAATTTGTTATCAGTTTGTTTTGGTTGTTGA
1 AAACAACATA-TTCCCTATCATGTTCTTCTTCTTCAACTTATTATCAGTTTGTTTCAGTTGTTAA
* ** *
2437099 TAAATATTTTAG
65 TAAAAATTAAAA
* * ** * *
2437111 AAACAATATATTCCCTATCATGTTCTTCTTCTTTAGGTCATTATTAGTTTGTTTCA
1 AAACAACATATTCCCTATCATGTTCTTCTTCTTCAACTTATTATCAGTTTGTTTCA
2437167 ACTGTTGATG
Statistics
Matches: 105, Mismatches: 25, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
75 4 0.04
76 97 0.92
77 4 0.04
ACGTcount: A:0.28, C:0.15, G:0.10, T:0.48
Consensus pattern (76 bp):
AAACAACATATTCCCTATCATGTTCTTCTTCTTCAACTTATTATCAGTTTGTTTCAGTTGTTAAT
AAAAATTAAAA
Found at i:2437173 original size:76 final size:75
Alignment explanation
Indices: 2436958--2437189 Score: 225
Period size: 76 Copynumber: 3.1 Consensus size: 75
2436948 TTTGGTTATT
*
2436958 GAAACAACATATTCCCTATCATGTTCTTCTTCTTCAACTTATT-TTCAGTTTGTTTCAGTTGTTA
1 GAAACAACATATTCCCTATCATGTTCTTCTTCTTCAACTTATTATT-AGTTTGTTTCAGTTGTTG
**
2437022 ATAAAAATTAAA
65 AT-AAAATTTTA
* * * * * * * **
2437034 AAAACAACATATTTCGC-ATTATGTTCTTTTTCTTCAATTTGTTATCAGTTTGTTTTGGTTGTTG
1 GAAACAACATA-TTCCCTATCATGTTCTTCTTCTTCAACTTATTATTAGTTTGTTTCAGTTGTTG
2437098 ATAAATATTTTA
65 ATAAA-ATTTTA
* * ** * **
2437110 GAAACAATATATTCCCTATCATGTTCTTCTTCTTTAGGTCATTATTAGTTTGTTTCAACTGTTGA
1 GAAACAACATATTCCCTATCATGTTCTTCTTCTTCAACTTATTATTAGTTTGTTTCAGTTGTTGA
*
2437175 TGGAAATTTTA
66 T-AAAATTTTA
2437186 GAAA
1 GAAA
2437190 TCGCATATTA
Statistics
Matches: 123, Mismatches: 28, Indels: 10
0.76 0.17 0.06
Matches are distributed among these distances:
75 7 0.06
76 109 0.89
77 7 0.06
ACGTcount: A:0.29, C:0.14, G:0.11, T:0.46
Consensus pattern (75 bp):
GAAACAACATATTCCCTATCATGTTCTTCTTCTTCAACTTATTATTAGTTTGTTTCAGTTGTTGA
TAAAATTTTA
Found at i:2440594 original size:50 final size:51
Alignment explanation
Indices: 2440540--2440649 Score: 168
Period size: 51 Copynumber: 2.2 Consensus size: 51
2440530 ATTTGCCTGC
* *
2440540 ATGTATCGATACATCTGGG-TAAAATCCAAAATGTATCGATACAATGAATA
1 ATGTATCGATACATCTGGGAAAAAACCCAAAATGTATCGATACAATGAATA
* *
2440590 ATGTATCAATACATCTGGGAAAAAACCCAGAATGTATCGATACAATGAATA
1 ATGTATCGATACATCTGGGAAAAAACCCAAAATGTATCGATACAATGAATA
*
2440641 GTGTATCGA
1 ATGTATCGA
2440650 CACAAACAGT
Statistics
Matches: 53, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
50 18 0.34
51 35 0.66
ACGTcount: A:0.42, C:0.15, G:0.17, T:0.26
Consensus pattern (51 bp):
ATGTATCGATACATCTGGGAAAAAACCCAAAATGTATCGATACAATGAATA
Found at i:2441735 original size:32 final size:31
Alignment explanation
Indices: 2441699--2441812 Score: 106
Period size: 32 Copynumber: 3.5 Consensus size: 31
2441689 TTGACGTGAT
2441699 GGTTTTG-CCTCGGTCAACTTCTTTTCAACTTA
1 GGTTTTGCCCT-GGTC-ACTTCTTTTCAACTTA
* * * *
2441731 GGTTTTGCCCTAGTCAC-CCTTTATTAACATGA
1 GGTTTTGCCCTGGTCACTTCTTT-TCAAC-TTA
*
2441763 TGGTTTTGCCCTGGTCTACTTCTTTTCCACTTA
1 -GGTTTTGCCCTGGTC-ACTTCTTTTCAACTTA
*
2441796 GGTTTTGCCCTAGTCAC
1 GGTTTTGCCCTGGTCAC
2441813 CCGTTGTTGA
Statistics
Matches: 66, Mismatches: 10, Indels: 13
0.74 0.11 0.15
Matches are distributed among these distances:
30 4 0.06
31 8 0.12
32 26 0.39
33 19 0.29
34 5 0.08
35 4 0.06
ACGTcount: A:0.15, C:0.26, G:0.17, T:0.42
Consensus pattern (31 bp):
GGTTTTGCCCTGGTCACTTCTTTTCAACTTA
Found at i:2441773 original size:33 final size:32
Alignment explanation
Indices: 2441731--2441844 Score: 97
Period size: 33 Copynumber: 3.5 Consensus size: 32
2441721 TTTCAACTTA
2441731 GGTTTTGCCCTAGTCACCCTTTATTAACATGAT
1 GGTTTTGCCCTAGTCACCCTTT-TTAACATGAT
* * ** *
2441764 GGTTTTGCCCTGGTCTACTTCTTTTCCAC-TTA-
1 GGTTTTGCCCTAGTC-AC-CCTTTTTAACATGAT
* *
2441796 GGTTTTGCCCTAGTCACCCGTTGTTGACATGAT
1 GGTTTTGCCCTAGTCACCC-TTTTTAACATGAT
**
2441829 GGTTTCACCCTAGTCA
1 GGTTTTGCCCTAGTCA
2441845 ACTTTTTTTG
Statistics
Matches: 63, Mismatches: 13, Indels: 10
0.73 0.15 0.12
Matches are distributed among these distances:
30 1 0.02
31 7 0.11
32 16 0.25
33 30 0.48
34 5 0.08
35 4 0.06
ACGTcount: A:0.16, C:0.26, G:0.18, T:0.39
Consensus pattern (32 bp):
GGTTTTGCCCTAGTCACCCTTTTTAACATGAT
Found at i:2441884 original size:64 final size:65
Alignment explanation
Indices: 2441685--2442003 Score: 324
Period size: 65 Copynumber: 4.9 Consensus size: 65
2441675 ATTTTTACCT
* * *
2441685 TTTGTTGACGTGATGGTTTT-GCCTCGGTCAACTTCTTTTCAACTTAGGTTTTGCCCTAGTCACC
1 TTTGTTGACATGATGGTTTTACCCT-GGTCAACTTCTTTTCGACTTAGGTTTTGCCCTAGTCACC
2441749 C
65 C
* * * * *
2441750 TTTATTAACATGATGGTTTTGCCCTGGTCTACTTCTTTTCCACTTAGGTTTTGCCCTAGTCACCC
1 TTTGTTGACATGATGGTTTTACCCTGGTCAACTTCTTTTCGACTTAGGTTTTGCCCTAGTCACCC
* * * * * ** *
2441815 GTTGTTGACATGATGGTTTCACCCTAGTCAACTT-TTTTTGACTTAGGTTTTGCCCCAGTTGCCT
1 TTTGTTGACATGATGGTTTTACCCTGGTCAACTTCTTTTCGACTTAGGTTTTGCCCTAGTCACCC
** * * * *
2441879 TTTGTTGATGTGATGGTTTTACCCTGGTCAATTTCTTTTTAGACTTAGG-TTTGCCTTGGTCACC
1 TTTGTTGACATGATGGTTTTACCCTGGTCAACTTC-TTTTCGACTTAGGTTTTGCCCTAGTCACC
*
2441943 T
65 C
* * * *
2441944 TTTCTTAACGTGATGGCTTTT-CCCTGGTCAACTTCTTTATAGACTTA-GTTTTGCCCTAGT
1 TTTGTTGACATGATGG-TTTTACCCTGGTCAACTTCTTT-TCGACTTAGGTTTTGCCCTAGT
2442004 TAATTTTTTT
Statistics
Matches: 211, Mismatches: 37, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
64 56 0.27
65 136 0.64
66 19 0.09
ACGTcount: A:0.15, C:0.22, G:0.19, T:0.44
Consensus pattern (65 bp):
TTTGTTGACATGATGGTTTTACCCTGGTCAACTTCTTTTCGACTTAGGTTTTGCCCTAGTCACCC
Found at i:2441917 original size:129 final size:130
Alignment explanation
Indices: 2441760--2442004 Score: 291
Period size: 129 Copynumber: 1.9 Consensus size: 130
2441750 TTTATTAACA
* * * * *
2441760 TGATGGTTTTGCCCTGGTCTACTTC-TTTTCCACTTAGGTTTTGCCCTAGTCACCCGTTGTTGAC
1 TGATGGTTTTACCCTGGTCAACTTCTTTTTACACTTAGG-TTTGCCCTAGTCACCCGTTCTTAAC
*
2441824 ATGATGG-TTTCACCCTAGTCAACTT-TTT-TTGACTTAGGTTTTGCCCCAGTTGCCTTTTGTTG
65 ATGATGGCTTT-ACCCTAGTCAACTTCTTTATAGACTTA-GTTTTGCCCCAGTTGCCTTTTGTTG
2441886 ATG
128 ATG
* * * * ** *
2441889 TGATGGTTTTACCCTGGTCAATTTCTTTTTAGACTTAGGTTTGCCTTGGTCACCTTTTCTTAACG
1 TGATGGTTTTACCCTGGTCAACTTCTTTTTACACTTAGGTTTGCCCTAGTCACCCGTTCTTAACA
* * *
2441954 TGATGGCTTTTCCCTGGTCAACTTCTTTATAGACTTAGTTTTGCCCTAGTT
66 TGATGGCTTTACCCTAGTCAACTTCTTTATAGACTTAGTTTTGCCCCAGTT
2442005 AATTTTTTTG
Statistics
Matches: 96, Mismatches: 16, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
129 59 0.61
130 30 0.31
131 7 0.07
ACGTcount: A:0.14, C:0.22, G:0.19, T:0.44
Consensus pattern (130 bp):
TGATGGTTTTACCCTGGTCAACTTCTTTTTACACTTAGGTTTGCCCTAGTCACCCGTTCTTAACA
TGATGGCTTTACCCTAGTCAACTTCTTTATAGACTTAGTTTTGCCCCAGTTGCCTTTTGTTGATG
Found at i:2442072 original size:62 final size:63
Alignment explanation
Indices: 2442000--2442120 Score: 156
Period size: 63 Copynumber: 1.9 Consensus size: 63
2441990 AGTTTTGCCC
* * * * *
2442000 TAGTTAATTTTTTTGC-CTT-GAGTTTTACCCTGGTCACCTTTTGTTGACGTGATGGTTTGCTT
1 TAGTCAATTTTTTTCCACTTAG-GTTTCACCCTAGTCACCTTTTGTTGACGTGATAGTTTGCTT
* *
2442062 TAGTCAATTTTTTTCCACTTAGGTTTCATCCTAGTCACCTTTTGTTGATGTGATAGTTT
1 TAGTCAATTTTTTTCCACTTAGGTTTCACCCTAGTCACCTTTTGTTGACGTGATAGTTT
2442121 CACCCTGGTT
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
62 14 0.28
63 35 0.70
64 1 0.02
ACGTcount: A:0.16, C:0.17, G:0.18, T:0.50
Consensus pattern (63 bp):
TAGTCAATTTTTTTCCACTTAGGTTTCACCCTAGTCACCTTTTGTTGACGTGATAGTTTGCTT
Found at i:2442265 original size:128 final size:126
Alignment explanation
Indices: 2442023--2442303 Score: 289
Period size: 128 Copynumber: 2.2 Consensus size: 126
2442013 TGCCTTGAGT
* * **
2442023 TTTACCCTGGTCACCTTTTGTTGACGTGATGGTTTGCTTTAGTCAATTTTTTTCCACTTAGGTTT
1 TTTACCTTGGTCACCTTTTGTTGACATGATGGTTTGCCCTAGTCAATTTTTTT-CACTTAGGTTT
* * * ** * * * *
2442088 CATCCTAGTCACCTTTTGTTGATGTGATAGTTTCACCCTGGTTAACTTCTTTTCGACTTAGG
65 CAGCCTAGCCACCCTTTGTTGACATGATAGTTTCACCCTAGTCAACTTCTTTTCAACTTAAG
*
2442150 TATTACCTTGGTTACCTTTTGTTGACATGATGGTTT-CACCTAGTCAACTTCTTTTT-ACTTAGG
1 T-TTACCTTGGTCACCTTTTGTTGACATGATGGTTTGC-CCTAGTCAA-TT-TTTTTCACTTAGG
* * ** *
2442213 TTT-GGCCTTAGCCACCCTTTGTTGACATGATGGTTTTGCCCTAGTCAGCTTCTTTTCAACTTAA
62 TTTCAGCC-TAGCCACCCTTTGTTGACATGATAGTTTCACCCTAGTCAACTTCTTTTCAACTTAA
2442277 G
126 G
* *
2442278 TTGTACCTTGGTCAACTTTTTTTGAC
1 TT-TACCTTGGTCACCTTTTGTTGAC
2442304 TTAGGTTTCG
Statistics
Matches: 126, Mismatches: 22, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
127 5 0.04
128 114 0.90
129 2 0.02
130 5 0.04
ACGTcount: A:0.17, C:0.21, G:0.17, T:0.45
Consensus pattern (126 bp):
TTTACCTTGGTCACCTTTTGTTGACATGATGGTTTGCCCTAGTCAATTTTTTTCACTTAGGTTTC
AGCCTAGCCACCCTTTGTTGACATGATAGTTTCACCCTAGTCAACTTCTTTTCAACTTAAG
Found at i:2448978 original size:13 final size:13
Alignment explanation
Indices: 2448960--2448986 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
2448950 TACCAAGAAC
2448960 ATGTATCGATACA
1 ATGTATCGATACA
2448973 ATGTATCGATACA
1 ATGTATCGATACA
2448986 A
1 A
2448987 AGCAATATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2449002 original size:33 final size:32
Alignment explanation
Indices: 2448943--2449005 Score: 99
Period size: 33 Copynumber: 1.9 Consensus size: 32
2448933 AATTCAGTGA
*
2448943 GTATCGATACCAAGAACATGTATCGATACAAT
1 GTATCGATACAAAGAACATGTATCGATACAAT
*
2448975 GTATCGATACAAAGCAATATGTATCGATACA
1 GTATCGATACAAAG-AACATGTATCGATACA
2449006 TCTAGGTGTG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
32 13 0.46
33 15 0.54
ACGTcount: A:0.41, C:0.17, G:0.16, T:0.25
Consensus pattern (32 bp):
GTATCGATACAAAGAACATGTATCGATACAAT
Found at i:2451434 original size:22 final size:22
Alignment explanation
Indices: 2451383--2451435 Score: 67
Period size: 20 Copynumber: 2.5 Consensus size: 22
2451373 AACTGTTTTT
2451383 GATGAAGATTTTGATGGAAAATA
1 GATGAA-ATTTTGATGGAAAATA
2451406 GAT--AATTTTGATGTGAAAA-A
1 GATGAAATTTTGATG-GAAAATA
2451426 GATGAAATTT
1 GATGAAATTT
2451436 GAGAAGGATT
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
20 13 0.48
21 6 0.22
22 5 0.19
23 3 0.11
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.34
Consensus pattern (22 bp):
GATGAAATTTTGATGGAAAATA
Found at i:2451436 original size:21 final size:21
Alignment explanation
Indices: 2451383--2451437 Score: 60
Period size: 21 Copynumber: 2.6 Consensus size: 21
2451373 AACTGTTTTT
2451383 GATGAAGATTTTGATGGAAAATA
1 GATGAA-A-TTTGATGGAAAATA
*
2451406 GAT-AATTTTGATGTGAAAA-A
1 GATGAAATTTGATG-GAAAATA
2451426 GATGAAATTTGA
1 GATGAAATTTGA
2451438 GAAGGATTTG
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
20 11 0.39
21 12 0.43
22 2 0.07
23 3 0.11
ACGTcount: A:0.44, C:0.00, G:0.24, T:0.33
Consensus pattern (21 bp):
GATGAAATTTGATGGAAAATA
Found at i:2455894 original size:52 final size:52
Alignment explanation
Indices: 2455746--2455874 Score: 231
Period size: 52 Copynumber: 2.5 Consensus size: 52
2455736 CGAGATATGA
*
2455746 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATTGATACATCTAGGC
1 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTAGGC
* *
2455798 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGT
1 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTAGGC
2455850 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
2455875 AAGATCAGTG
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 74 1.00
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.37
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTAGGC
Found at i:2455901 original size:13 final size:13
Alignment explanation
Indices: 2455883--2455907 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2455873 CAAAGATCAG
2455883 TGTATCGATACAA
1 TGTATCGATACAA
2455896 TGTATCGATACA
1 TGTATCGATACA
2455908 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2455974 original size:19 final size:19
Alignment explanation
Indices: 2455950--2456033 Score: 108
Period size: 19 Copynumber: 4.7 Consensus size: 19
2455940 TAGCTTAAAT
2455950 TGTATCGATACAAAATTTA
1 TGTATCGATACAAAATTTA
2455969 TGTATCGATACAAAATTTA
1 TGTATCGATACAAAATTTA
2455988 TGTATCGATAC---A---A
1 TGTATCGATACAAAATTTA
*
2456001 TGTATCGATACAATATTTTA
1 TGTATCGATACAA-AATTTA
2456021 TGTATCGATACAA
1 TGTATCGATACAA
2456034 TGTATCGGTA
Statistics
Matches: 57, Mismatches: 1, Indels: 13
0.80 0.01 0.18
Matches are distributed among these distances:
13 12 0.21
16 1 0.02
19 30 0.53
20 14 0.25
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.37
Consensus pattern (19 bp):
TGTATCGATACAAAATTTA
Found at i:2456005 original size:13 final size:13
Alignment explanation
Indices: 2455987--2456014 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
2455977 TACAAAATTT
2455987 ATGTATCGATACA
1 ATGTATCGATACA
2456000 ATGTATCGATACA
1 ATGTATCGATACA
2456013 AT
1 AT
2456015 ATTTTATGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2456025 original size:20 final size:18
Alignment explanation
Indices: 2455950--2456068 Score: 105
Period size: 19 Copynumber: 6.8 Consensus size: 18
2455940 TAGCTTAAAT
2455950 TGTATCGATACAAAATTTA
1 TGTATCGATAC-AAATTTA
2455969 TGTATCGATACAAAATTTA
1 TGTATCGATAC-AAATTTA
2455988 TGTATCGATAC--A---A
1 TGTATCGATACAAATTTA
2456001 TGTATCGATACAATATTTTA
1 TGTATCGATACAA-A-TTTA
2456021 TGTATCGATAC--A---A
1 TGTATCGATACAAATTTA
*
2456034 TGTATCGGTACAATATTTTA
1 TGTATCGATACAA-A-TTTA
2456054 TGTATCGATACAAAT
1 TGTATCGATACAAAT
2456069 CGTTGAAATT
Statistics
Matches: 84, Mismatches: 2, Indels: 29
0.73 0.02 0.25
Matches are distributed among these distances:
13 23 0.27
16 3 0.04
17 1 0.01
18 1 0.01
19 31 0.37
20 25 0.30
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.38
Consensus pattern (18 bp):
TGTATCGATACAAATTTA
Found at i:2456026 original size:33 final size:33
Alignment explanation
Indices: 2455968--2456066 Score: 173
Period size: 33 Copynumber: 3.0 Consensus size: 33
2455958 TACAAAATTT
*
2455968 ATGTATCGATACAA-AATTTATGTATCGATACA
1 ATGTATCGATACAATATTTTATGTATCGATACA
2456000 ATGTATCGATACAATATTTTATGTATCGATACA
1 ATGTATCGATACAATATTTTATGTATCGATACA
*
2456033 ATGTATCGGTACAATATTTTATGTATCGATACA
1 ATGTATCGATACAATATTTTATGTATCGATACA
2456066 A
1 A
2456067 ATCGTTGAAA
Statistics
Matches: 64, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
32 14 0.22
33 50 0.78
ACGTcount: A:0.37, C:0.12, G:0.13, T:0.37
Consensus pattern (33 bp):
ATGTATCGATACAATATTTTATGTATCGATACA
Found at i:2456648 original size:13 final size:13
Alignment explanation
Indices: 2456630--2456654 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2456620 CAAAGATCAG
2456630 TGTATCGATACAA
1 TGTATCGATACAA
2456643 TGTATCGATACA
1 TGTATCGATACA
2456655 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2456721 original size:19 final size:19
Alignment explanation
Indices: 2456697--2456814 Score: 107
Period size: 19 Copynumber: 6.7 Consensus size: 19
2456687 TAGCTTAAAT
2456697 TGTATCGATACAAAATTTA
1 TGTATCGATACAAAATTTA
2456716 TGTATCGATACAAAATTTA
1 TGTATCGATACAAAATTTA
2456735 TGTATCGATAC---A---A
1 TGTATCGATACAAAATTTA
* *
2456748 TGTATCGATATAATATTTTA
1 TGTATCGATACAA-AATTTA
2456768 TGTATCGATAC---A---A
1 TGTATCGATACAAAATTTA
*
2456781 TGTATCGATACAATATTTTA
1 TGTATCGATACAA-AATTTA
2456801 TGTATCGATACAAA
1 TGTATCGATACAAA
2456815 TCGTTGAAAT
Statistics
Matches: 80, Mismatches: 5, Indels: 28
0.71 0.04 0.25
Matches are distributed among these distances:
13 23 0.29
16 1 0.01
19 31 0.39
20 25 0.31
ACGTcount: A:0.39, C:0.11, G:0.12, T:0.38
Consensus pattern (19 bp):
TGTATCGATACAAAATTTA
Found at i:2456773 original size:33 final size:33
Alignment explanation
Indices: 2456715--2456813 Score: 173
Period size: 33 Copynumber: 3.0 Consensus size: 33
2456705 TACAAAATTT
*
2456715 ATGTATCGATACAA-AATTTATGTATCGATACA
1 ATGTATCGATACAATATTTTATGTATCGATACA
*
2456747 ATGTATCGATATAATATTTTATGTATCGATACA
1 ATGTATCGATACAATATTTTATGTATCGATACA
2456780 ATGTATCGATACAATATTTTATGTATCGATACA
1 ATGTATCGATACAATATTTTATGTATCGATACA
2456813 A
1 A
2456814 ATCGTTGAAA
Statistics
Matches: 63, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
32 13 0.21
33 50 0.79
ACGTcount: A:0.38, C:0.11, G:0.12, T:0.38
Consensus pattern (33 bp):
ATGTATCGATACAATATTTTATGTATCGATACA
Found at i:2456785 original size:13 final size:13
Alignment explanation
Indices: 2456767--2456794 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
2456757 ATAATATTTT
2456767 ATGTATCGATACA
1 ATGTATCGATACA
2456780 ATGTATCGATACA
1 ATGTATCGATACA
2456793 AT
1 AT
2456795 ATTTTATGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2457723 original size:67 final size:68
Alignment explanation
Indices: 2457601--2457727 Score: 184
Period size: 67 Copynumber: 1.9 Consensus size: 68
2457591 CGTCATTTTT
* * *
2457601 AAAGATGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGAAGATG
1 AAAGATGATAAAGATGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGAAGATG
2457666 AGA
66 AGA
* * * *
2457669 AAAG-TGATAAAGATGCCAATATGTTGATTCACGGCCAACGATATTGGGCTTAAAGATGA
1 AAAGATGATAAAGATGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGA
2457728 GAAAAAGGAT
Statistics
Matches: 52, Mismatches: 7, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
67 48 0.92
68 4 0.08
ACGTcount: A:0.39, C:0.13, G:0.25, T:0.24
Consensus pattern (68 bp):
AAAGATGATAAAGATGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGAAGATG
AGA
Found at i:2457777 original size:55 final size:52
Alignment explanation
Indices: 2457677--2458014 Score: 265
Period size: 49 Copynumber: 6.9 Consensus size: 52
2457667 GAAAAGTGAT
* * * * * * **
2457677 AAAGATGCCAATATGTTGATTCACGGCCAACGATATTGGGCTTAAAGATGAGAA
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATG-G-A
* *
2457731 AAAGGATGTCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
1 AAAGG-TGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
* *
2457784 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGAC-T-----T---
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
* *
2457827 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGA---A
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
* * * *
2457876 GAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC-T-----T---
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
* * *
2457919 AAAGGTGCCAATGTGCTGATTCAAGGCTAGCTACATTGGACTTAAAGAT-G-
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
* * *
2457969 -AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAG
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAG
2458015 GTAGATGCCA
Statistics
Matches: 239, Mismatches: 29, Indels: 37
0.78 0.10 0.12
Matches are distributed among these distances:
43 75 0.31
44 2 0.01
46 1 0.00
48 1 0.00
49 80 0.33
51 1 0.00
52 32 0.13
53 6 0.03
54 5 0.02
55 36 0.15
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (52 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
Found at i:2457845 original size:43 final size:43
Alignment explanation
Indices: 2457784--2458016 Score: 295
Period size: 43 Copynumber: 5.1 Consensus size: 43
2457774 TAAAGATGGA
2457784 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* *
2457827 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
*
2457870 AAAGAAGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1 -----A-AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* * *
2457919 AAAGGTGCCAATGTGCTGATTCAAGGCTAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
*
2457962 AAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1 ----A--AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
2458011 AAAGGT
1 AAAGGT
2458017 AGATGCCACC
Statistics
Matches: 165, Mismatches: 13, Indels: 24
0.82 0.06 0.12
Matches are distributed among these distances:
43 84 0.51
44 1 0.01
45 1 0.01
47 1 0.01
48 1 0.01
49 77 0.47
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (43 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
Found at i:2457900 original size:49 final size:48
Alignment explanation
Indices: 2457730--2458014 Score: 329
Period size: 49 Copynumber: 6.0 Consensus size: 48
2457720 AAAGATGAGA
* * *
2457730 AAAAGGATGTCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGG
1 AAAAGG-TGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTT-AA-A--G
*
2457783 AAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT----
1 AAAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAG
*
2457827 -AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAG
1 AAAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAG
* *
2457874 AAGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT----
1 AA-AAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAG
* *
2457919 -AAAGGTGCCAATGTGCTGATTCAAGGCTAGCTACATTGGACTTAAAG
1 AAAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAG
* * *
2457966 ATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAG
1 A-AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAG
2458015 GTAGATGCCA
Statistics
Matches: 202, Mismatches: 18, Indels: 28
0.81 0.07 0.11
Matches are distributed among these distances:
43 79 0.39
44 1 0.00
48 1 0.00
49 81 0.40
52 34 0.17
53 6 0.03
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (48 bp):
AAAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAG
Found at i:2457916 original size:92 final size:92
Alignment explanation
Indices: 2457731--2458016 Score: 482
Period size: 92 Copynumber: 3.1 Consensus size: 92
2457721 AAGATGAGAA
* * *
2457731 AAAGGATGTCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGCCAAT
1 AAAGG-TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGA---AGAAGGTGCCAAT
*
2457796 ATGCTGATTCAAGGCCAGCTATATTGGACTT
62 ATGCTGATTCAAGGCCAGCGATATTGGACTT
2457827 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGC
2457892 TGATTCAAGGCCAGCGATATTGGACTT
66 TGATTCAAGGCCAGCGATATTGGACTT
* *
2457919 AAAGGTGCCAATGTGCTGATTCAAGGCTAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGC
2457984 TGATTCAAGGCCAGCGATATTGGACTT
66 TGATTCAAGGCCAGCGATATTGGACTT
2458011 AAAGGT
1 AAAGGT
2458017 AGATGCCACC
Statistics
Matches: 184, Mismatches: 6, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
92 138 0.75
95 41 0.22
96 5 0.03
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (92 bp):
AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGC
TGATTCAAGGCCAGCGATATTGGACTT
Found at i:2458057 original size:33 final size:33
Alignment explanation
Indices: 2458020--2458291 Score: 397
Period size: 33 Copynumber: 8.3 Consensus size: 33
2458010 TAAAGGTAGA
* * *
2458020 TGCCACCAACTTGTGTGGCCTTTTGAAGAAGG-T
1 TGCCACCGACTTGTGTGGGCTTTAG-AGAAGGTT
* * *
2458053 TGCCACCGACTTGTGTGGCCTTTAGAG-GGGGT
1 TGCCACCGACTTGTGTGGGCTTTAGAGAAGGTT
2458085 TGCCACC-ACTTGTGTGGGCTTTAGAGAAGGTT
1 TGCCACCGACTTGTGTGGGCTTTAGAGAAGGTT
*
2458117 TGCCACCGACTTGTGTGGGCTTTAGAGACGGTT
1 TGCCACCGACTTGTGTGGGCTTTAGAGAAGGTT
** *
2458150 TGCCATTGACTTGTGTGGGCTTTAGAGAATGTT
1 TGCCACCGACTTGTGTGGGCTTTAGAGAAGGTT
*
2458183 TGCCACCGACTTGTGTGGGCTTTAGAAAAGGTT
1 TGCCACCGACTTGTGTGGGCTTTAGAGAAGGTT
* *
2458216 TGCCACCGACTTATGAGGGCTTTAGAGAAGGTT
1 TGCCACCGACTTGTGTGGGCTTTAGAGAAGGTT
2458249 TGCCACCGACTTGTGTGGGCTTTAGAGAAGGTT
1 TGCCACCGACTTGTGTGGGCTTTAGAGAAGGTT
2458282 TGCCACCGAC
1 TGCCACCGAC
2458292 CCAATGCACT
Statistics
Matches: 216, Mismatches: 20, Indels: 6
0.89 0.08 0.02
Matches are distributed among these distances:
31 20 0.09
32 20 0.09
33 176 0.81
ACGTcount: A:0.19, C:0.20, G:0.31, T:0.30
Consensus pattern (33 bp):
TGCCACCGACTTGTGTGGGCTTTAGAGAAGGTT
Found at i:2463550 original size:13 final size:13
Alignment explanation
Indices: 2463532--2463556 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2463522 CAAAGATCAG
2463532 TGTATCGATACAA
1 TGTATCGATACAA
2463545 TGTATCGATACA
1 TGTATCGATACA
2463557 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2463662 original size:33 final size:32
Alignment explanation
Indices: 2463599--2463663 Score: 85
Period size: 33 Copynumber: 2.0 Consensus size: 32
2463589 TAGCTTAAAT
* *
2463599 TGTATTGATACAAAATTTATGTATTAATACAA
1 TGTATCGATACAAAATTTATGTATCAATACAA
* *
2463631 TGTATCGATACAATATTTTATGTATCGATACAA
1 TGTATCGATACAA-AATTTATGTATCAATACAA
2463664 ATCGTTGAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
32 12 0.43
33 16 0.57
ACGTcount: A:0.40, C:0.09, G:0.11, T:0.40
Consensus pattern (32 bp):
TGTATCGATACAAAATTTATGTATCAATACAA
Found at i:2467616 original size:13 final size:13
Alignment explanation
Indices: 2467598--2467622 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2467588 CATAAAGTGT
2467598 TGTATCGATACAA
1 TGTATCGATACAA
2467611 TGTATCGATACA
1 TGTATCGATACA
2467623 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2467620 original size:33 final size:33
Alignment explanation
Indices: 2467578--2467644 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
2467568 TTCAACGATT
2467578 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
*** *
2467611 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
2467644 T
1 T
2467645 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAGTGTTGTATCGATACAA
Found at i:2467703 original size:13 final size:13
Alignment explanation
Indices: 2467685--2467709 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2467675 ATTACTCAAA
2467685 TGTATCGATACAT
1 TGTATCGATACAT
2467698 TGTATCGATACA
1 TGTATCGATACA
2467710 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2467774 original size:52 final size:52
Alignment explanation
Indices: 2467718--2467846 Score: 231
Period size: 52 Copynumber: 2.5 Consensus size: 52
2467708 CACTGATCTT
* *
2467718 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCAATACACTATAAAA
*
2467770 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCAATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCAATACACTATAAAA
2467822 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
2467847 TCATATTTCG
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 74 1.00
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCAATACACTATAAAA
Found at i:2472032 original size:20 final size:20
Alignment explanation
Indices: 2472007--2472077 Score: 72
Period size: 20 Copynumber: 3.5 Consensus size: 20
2471997 TCCAGTTTTA
2472007 TGTATCGATACAATTCAGTG
1 TGTATCGATACAATTCAGTG
** * *
2472027 TGTATCGATACAAAGCAATA
1 TGTATCGATACAATTCAGTG
**
2472047 TGTATCGATAC-ATCTGTGTG
1 TGTATCGATACAAT-TCAGTG
2472067 TGTATCGATAC
1 TGTATCGATAC
2472078 TTTTTAGGGT
Statistics
Matches: 40, Mismatches: 10, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
19 1 0.03
20 39 0.98
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.34
Consensus pattern (20 bp):
TGTATCGATACAATTCAGTG
Found at i:2475467 original size:20 final size:21
Alignment explanation
Indices: 2475428--2475469 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 21
2475418 TTAAGTATAG
2475428 ATGTTTTTCAAGCATAAAAATA
1 ATGTTTTTCAAG-ATAAAAATA
2475450 ATGTTTTTCAAG-TAAAAATA
1 ATGTTTTTCAAGATAAAAATA
2475470 TTTCAAAGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 8 0.40
22 12 0.60
ACGTcount: A:0.45, C:0.07, G:0.10, T:0.38
Consensus pattern (21 bp):
ATGTTTTTCAAGATAAAAATA
Found at i:2476229 original size:30 final size:31
Alignment explanation
Indices: 2476171--2476229 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 31
2476161 GATAGGGAGA
*
2476171 GAGGTTCTATCTTAGCTTGTGAAAAGATAAG
1 GAGGTTCTATCTTAGCCTGTGAAAAGATAAG
2476202 GAGGTTTCTATCTTAGCCT-TG-AAAGATA
1 GAGG-TTCTATCTTAGCCTGTGAAAAGATA
2476230 GTGTTGTAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 7 0.27
31 6 0.23
32 13 0.50
ACGTcount: A:0.31, C:0.12, G:0.24, T:0.34
Consensus pattern (31 bp):
GAGGTTCTATCTTAGCCTGTGAAAAGATAAG
Found at i:2477397 original size:329 final size:324
Alignment explanation
Indices: 2476795--2477696 Score: 1151
Period size: 332 Copynumber: 2.7 Consensus size: 324
2476785 TCCATATTTC
* * ***
2476795 GAAATAAATAATAATATTTTATTAA-TTTAAAATTAAAAACCAAGAAAAATCCTCTTGAAAAAAT
1 GAAATAAATAATAATATTTTATGAATTTTAAAAATAAAAA-CAAGAAAAATCCTCCCAAAAAAAT
* * * *
2476859 TTATGGAGTCGAAAACTCCATATTTCGAAAAAAAGAGAATTTCAAGGAAAAATTCAAAATTTATG
65 TTATAGAGTAGAAAACTCCGTATTTCGAAAAAAAGAGAATTTCAAGGAAAAATTCAAAATTAATG
* * *
2476924 AAAATGAATGGATTTTTAAAATCTAA-T-ATT-AAATAATTAACAATATTTTATGAATTTTAAAA
130 AAAATGAATGAATTTTTAAAA-CTAATTAATTGAAATAAATAATAATATTTTATGAATTTTAAAA
** * * * *
2476986 ATTAAAAACCAAGACGAATCCTCCT-AAAAAAATTTATGGAGTAGAAAGCTTCGTATTTAGAAAA
194 ATTAAAAA-CAAGAAAAATCC-CCTCAAAAAAATTTACGGAGTAAAAAACTTCGTATTTACAAAA
* *
2477050 AAAGAGAATTTCAAGG-AAATATTCAAAATTTATGGAAATGAATGAAATTTTGAAAA-TGAAATT
257 AAAGAGAATTTCAAGGAAAAAATTCAAAATTCATGGAAATGAATGAAATTTTGAAAACT--AATT
2477113 AATAT
320 AATAT
2477118 GAAATAAATAATAATATTTTATGAATTTTAAAAATAAAAA-AAGAAAAATCCTCCCAAAAAAATT
1 GAAATAAATAATAATATTTTATGAATTTTAAAAATAAAAACAAGAAAAATCCTCCCAAAAAAATT
* * *
2477182 TACAAAGTAGAAAACTCCGTATGTCGAAAAAAAGGAGAATTTCAAGGAAAAAGTTCAAAATTAAT
66 TATAGAGTAGAAAACTCCGTATTTCGAAAAAAA-GAGAATTTCAAGGAAAAA-TTCAAAATTAAT
** *
2477247 GGGAATGAATGAATTTTTGAAAACTGAATTAATGTGAAATAAATAATAATATTTTATAAATTTTA
129 GAAAATGAATGAATTTTT-AAAACT-AATTAAT-TGAAATAAATAATAATATTTTATGAATTTTA
* *
2477312 AAAATTAAAATACAAGAAAAATCCCCTCAAAAAATTTTACGGAGTAAAAAAC-TCTGTATTTCCA
191 AAAATTAAAA-ACAAGAAAAATCCCCTCAAAAAAATTTACGGAGTAAAAAACTTC-GTATTTACA
*
2477376 AAAAAAGAGAATTTCAAGGAAAAAATTCAAAATTCATGGAAATGAATGAATTTTTGAAAACTAAT
254 AAAAAAGAGAATTTCAAGGAAAAAATTCAAAATTCATGGAAATGAATGAAATTTTGAAAACTAAT
2477441 TAATAT
319 TAATAT
*
2477447 GAAATAAATAATAATATTTTATGAATTTTAAGAATCAAAATACAAGAAAAATCC-CTCCAAAAAA
1 GAAATAAATAATAATATTTTATGAATTTTAAAAAT-AAAA-ACAAGAAAAATCCTC-CCAAAAAA
*
2477511 ATTTATAGAGTAGAAAACTCCGTATTTCAAAAAAAAGAGAATTTCAAGGAAAAAAATTCAAAATT
63 ATTTATAGAGTAGAAAACTCCGTATTTCGAAAAAAAGAGAATTTCAAGG--AAAAATTCAAAATT
* * * * *
2477576 CATGAAAATGAATGAATTTTTAAAAATTAAATTAATATGAATTAAATAATAAGATTTGATGAATT
126 AATGAAAATGAATGAATTTTT-AAAACT-AATTAAT-TGAAATAAATAATAATATTTTATGAATT
* * * *
2477641 TTAAAACTTAAAAACTAAAAAAAATCCTCTCAAAAAAAATTTATGGAG-AAGAAAAC
188 TTAAAAATTAAAAAC-AAGAAAAATCCCCTC-AAAAAAATTTACGGAGTAA-AAAAC
2477697 CTTGTAATTT
Statistics
Matches: 506, Mismatches: 50, Indels: 36
0.85 0.08 0.06
Matches are distributed among these distances:
322 48 0.09
323 42 0.08
324 41 0.08
325 6 0.01
326 1 0.00
327 2 0.00
328 6 0.01
329 135 0.27
330 42 0.08
331 18 0.04
332 141 0.28
333 24 0.05
ACGTcount: A:0.52, C:0.08, G:0.11, T:0.29
Consensus pattern (324 bp):
GAAATAAATAATAATATTTTATGAATTTTAAAAATAAAAACAAGAAAAATCCTCCCAAAAAAATT
TATAGAGTAGAAAACTCCGTATTTCGAAAAAAAGAGAATTTCAAGGAAAAATTCAAAATTAATGA
AAATGAATGAATTTTTAAAACTAATTAATTGAAATAAATAATAATATTTTATGAATTTTAAAAAT
TAAAAACAAGAAAAATCCCCTCAAAAAAATTTACGGAGTAAAAAACTTCGTATTTACAAAAAAAG
AGAATTTCAAGGAAAAAATTCAAAATTCATGGAAATGAATGAAATTTTGAAAACTAATTAATAT
Found at i:2477430 original size:166 final size:165
Alignment explanation
Indices: 2476795--2477696 Score: 1140
Period size: 165 Copynumber: 5.5 Consensus size: 165
2476785 TCCATATTTC
* **
2476795 GAAATAAATAATAATATTTTATTAA-TTT-AAAATTAAAAACCAAGAAAAATCCT-CTTGAAAAA
1 GAAATAAATAATAATATTTTATGAATTTTAAAAATTAAAAA-CAAGAAAAATCCTCCTCAAAAAA
* * *
2476857 ATTTATGGAGTCGAAAACTCCATATTTCGAAAAAAAGAGAATTTCAAGG-AAAAATTCAAAATTT
65 ATTTATGGAGTAGAAAACTCCGTATTTCGAAAAAAAGAGAATTTCAAGGAAAAAATTCAAAATTC
* *
2476921 ATGAAAATGAATGGATTTTT-AAAATCTAA-T-AT-T
130 ATGGAAATGAATGAATTTTTGAAAA-CTAATTAATAT
* * **
2476954 -AAATAATTAACAATATTTTATGAATTTTAAAAATTAAAAACCAAGACGAATCCTCCT-AAAAAA
1 GAAATAAATAATAATATTTTATGAATTTTAAAAATTAAAAA-CAAGAAAAATCCTCCTCAAAAAA
* * * * *
2477017 ATTTATGGAGTAGAAAGCTTCGTATTTAGAAAAAAAGAGAATTTCAAGG-AAATATTCAAAATTT
65 ATTTATGGAGTAGAAAACTCCGTATTTCGAAAAAAAGAGAATTTCAAGGAAAAAATTCAAAATTC
*
2477081 ATGGAAATGAATGAAATTTTGAAAA-TGAAATTAATAT
130 ATGGAAATGAATGAATTTTTGAAAACT--AATTAATAT
2477118 GAAATAAATAATAATATTTTATGAATTTTAAAAA-TAAAAA-AAGAAAAATCCTCC-CAAAAAAA
1 GAAATAAATAATAATATTTTATGAATTTTAAAAATTAAAAACAAGAAAAATCCTCCTCAAAAAAA
*** * * *
2477180 TTTACAAAGTAGAAAACTCCGTATGTCGAAAAAAAGGAGAATTTCAAGGAAAAAGTTCAAAATTA
66 TTTATGGAGTAGAAAACTCCGTATTTCGAAAAAAA-GAGAATTTCAAGGAAAAAATTCAAAATTC
* *
2477245 ATGGGAATGAATGAATTTTTGAAAACTGAATTAATGT
130 ATGGAAATGAATGAATTTTTGAAAACT-AATTAATAT
*
2477282 GAAATAAATAATAATATTTTATAAATTTTAAAAATTAAAATACAAGAAAAATCC-CCTCAAAAAA
1 GAAATAAATAATAATATTTTATGAATTTTAAAAATTAAAA-ACAAGAAAAATCCTCCTCAAAAAA
* * * * *
2477346 TTTTACGGAGTAAAAAACTCTGTATTTCCAAAAAAAGAGAATTTCAAGGAAAAAATTCAAAATTC
65 ATTTATGGAGTAGAAAACTCCGTATTTCGAAAAAAAGAGAATTTCAAGGAAAAAATTCAAAATTC
2477411 ATGGAAATGAATGAATTTTTGAAAACTAATTAATAT
130 ATGGAAATGAATGAATTTTTGAAAACTAATTAATAT
* *
2477447 GAAATAAATAATAATATTTTATGAATTTTAAGAATCAAAATACAAGAAAAAT-C-CCTCCAAAAA
1 GAAATAAATAATAATATTTTATGAATTTTAAAAATTAAAA-ACAAGAAAAATCCTCCT-CAAAAA
* *
2477510 AATTTATAGAGTAGAAAACTCCGTATTTCAAAAAAAAGAGAATTTCAAGGAAAAAAATTCAAAAT
64 AATTTATGGAGTAGAAAACTCCGTATTTCGAAAAAAAGAGAATTTCAAGG-AAAAAATTCAAAAT
* * *
2477575 TCATGAAAATGAATGAATTTTTAAAAATTAAATTAATAT
128 TCATGGAAATGAATGAATTTTTGAAAACT-AATTAATAT
* * * * *
2477614 GAATTAAATAATAAGATTTGATGAATTTTAAAACTTAAAAACTAAAAAAAATCCT-CTCAAAAAA
1 GAAATAAATAATAATATTTTATGAATTTTAAAAATTAAAAAC-AAGAAAAATCCTCCTC-AAAAA
*
2477678 AATTTATGGAGAAGAAAAC
64 AATTTATGGAGTAGAAAAC
2477697 CTTGTAATTT
Statistics
Matches: 652, Mismatches: 66, Indels: 41
0.86 0.09 0.05
Matches are distributed among these distances:
158 21 0.03
159 4 0.01
160 103 0.16
161 8 0.01
162 48 0.07
163 15 0.02
164 87 0.13
165 144 0.22
166 98 0.15
167 99 0.15
168 25 0.04
ACGTcount: A:0.52, C:0.08, G:0.11, T:0.29
Consensus pattern (165 bp):
GAAATAAATAATAATATTTTATGAATTTTAAAAATTAAAAACAAGAAAAATCCTCCTCAAAAAAA
TTTATGGAGTAGAAAACTCCGTATTTCGAAAAAAAGAGAATTTCAAGGAAAAAATTCAAAATTCA
TGGAAATGAATGAATTTTTGAAAACTAATTAATAT
Found at i:2477807 original size:332 final size:319
Alignment explanation
Indices: 2476797--2477807 Score: 1021
Period size: 332 Copynumber: 3.1 Consensus size: 319
2476787 CATATTTCGA
* * **
2476797 AATAAATAATAATATTTTATTAA-TTTAAAATTAAAAACCAAGAAAAATCCTCTTGAAAAAATTT
1 AATAAATAATAATATTTTATGAATTTTAAAAATAAAAA-CAAGAAAAATCCTC-CAAAAAAATTT
* * * * *
2476861 ATGGAGTCGAAAACTCCATATTTCGAAAAAAAGAGAATTTCAAGG-AAAAATTCAAAATTTATGA
64 ATAGAGTAGAAAACTCCGTATTTCAAAAAAAAGAGAATTTCAAGGAAAAAATTCAAAATTAATGA
* *
2476925 AAATGAATGGATTTTTAAAATCTAATATTAA-AT-AATT-AACAAT--ATTTTATGAATTTTAAA
129 AAATGAATGAATTTTTAAAAT-TAA-ATTAATATGAATTAAATAATAAATTTTATGAATTTTAAA
** * *
2476985 AATTAAAAACCAAGACGAATCCTC-CTAAAAAAATTTATGGAGTAGAAAGCTTCGTATTTAGAAA
192 AATTAAAAA-CAAGAAAAATCCTCTC-AAAAAAATTTATGGAGAAGAAAACTT-GTATTTAGAAA
* * * * *
2477049 AAAAGAGAATTT-CAAGGAAATATTCAAAATTTATGGAAATGAATGAAATTTTGAAAATGAAATT
254 AAAAGAGAATTTAGAAAGAAA-A-TCAAAATTCA-GGAAATGAATG-AATTTTGAAACT-AATTT
2477113 AAT-ATG
314 AATGA-G
2477119 AAATAAATAATAATATTTTATGAATTTTAAAAATAAAAA-AAGAAAAATCCTCCCAAAAAAATTT
1 -AATAAATAATAATATTTTATGAATTTTAAAAATAAAAACAAGAAAAATCCT-CCAAAAAAATTT
* * * * *
2477183 ACAAAGTAGAAAACTCCGTATGTCGAAAAAAAGGAGAATTTCAAGGAAAAAGTTCAAAATTAATG
64 ATAGAGTAGAAAACTCCGTATTTC-AAAAAAAAGAGAATTTCAAGGAAAAAATTCAAAATTAATG
** * * * * *
2477248 GGAATGAATGAATTTTTGAAAACTGAATTAATGTGAAATAAATAATAATATTTTATAAATTTTAA
128 AAAATGAATGAATTTTT-AAAATTAAATTAATATGAATTAAATAATAA-ATTTTATGAATTTTAA
* * * **
2477313 AAATTAAAATACAAGAAAAATCCCCTCAAAAAATTTTACGGAGTAA-AAAACTCTGTATTTCCAA
191 AAATTAAAA-ACAAGAAAAATCCTCTCAAAAAAATTTATGGAG-AAGAAAACT-TGTATTTAGAA
*
2477377 AAAAAGAGAATTTCAAGGAAA-AAATTCAAAATTCATGGAAATGAATGAATTTTTGAAAACTAAT
253 AAAAAGAGAATTT--A-GAAAGAAAATCAAAATTCA-GGAAATGAATGAA-TTTTG-AAACTAAT
*
2477441 TAATATGA-
312 TTA-ATGAG
*
2477449 AATAAATAATAATATTTTATGAATTTTAAGAATCAAAATACAAGAAAAATCCCTCCAAAAAAATT
1 AATAAATAATAATATTTTATGAATTTTAAAAAT-AAAA-ACAAGAAAAAT-CCTCCAAAAAAATT
*
2477514 TATAGAGTAGAAAACTCCGTATTTCAAAAAAAAGAGAATTTCAAGGAAAAAAATTCAAAATTCAT
63 TATAGAGTAGAAAACTCCGTATTTCAAAAAAAAGAGAATTTCAAGG-AAAAAATTCAAAATTAAT
*
2477579 GAAAATGAATGAATTTTTAAAAATTAAATTAATATGAATTAAATAATAAGATTTGATGAATTTTA
127 GAAAATGAATGAATTTTT-AAAATTAAATTAATATGAATTAAATAATAA-ATTTTATGAATTTTA
* *
2477644 AAACTTAAAAACTAAAAAAAATCCTCTCAAAAAAAATTTATGGAGAAGAAAACCTTGTAATTT-G
190 AAAATTAAAAAC-AAGAAAAATCCTCTC-AAAAAAATTTATGGAGAAGAAAA-CTTGT-ATTTAG
* * * * * **
2477708 AAAATAAGAGGAATTTAGAAAGAAAATCAATAACTCCA-AAAATAAAGGAGATTTCCCATAACTA
251 AAAAAAAGA-GAATTTAGAAAGAAAATCAA-AA-TTCAGGAAATGAATGA-ATTT-TGA-AACTA
2477772 ATTTAATGAG
310 ATTTAATGAG
* * *
2477782 AATTAATGATAATA-TTTAGGAATTTT
1 AATAAATAATAATATTTTATGAATTTT
2477808 GATATAAGAA
Statistics
Matches: 573, Mismatches: 74, Indels: 73
0.80 0.10 0.10
Matches are distributed among these distances:
322 39 0.07
323 47 0.08
324 46 0.08
325 7 0.01
326 5 0.01
329 109 0.19
330 38 0.07
331 33 0.06
332 176 0.31
333 58 0.10
334 15 0.03
ACGTcount: A:0.51, C:0.08, G:0.11, T:0.29
Consensus pattern (319 bp):
AATAAATAATAATATTTTATGAATTTTAAAAATAAAAACAAGAAAAATCCTCCAAAAAAATTTAT
AGAGTAGAAAACTCCGTATTTCAAAAAAAAGAGAATTTCAAGGAAAAAATTCAAAATTAATGAAA
ATGAATGAATTTTTAAAATTAAATTAATATGAATTAAATAATAAATTTTATGAATTTTAAAAATT
AAAAACAAGAAAAATCCTCTCAAAAAAATTTATGGAGAAGAAAACTTGTATTTAGAAAAAAAGAG
AATTTAGAAAGAAAATCAAAATTCAGGAAATGAATGAATTTTGAAACTAATTTAATGAG
Found at i:2483179 original size:17 final size:18
Alignment explanation
Indices: 2483112--2483176 Score: 50
Period size: 17 Copynumber: 3.7 Consensus size: 18
2483102 ATGAAAAGTC
2483112 AAAAGCAAAAGCACAAAA
1 AAAAGCAAAAGCACAAAA
*
2483130 AAATG-AATAA-CACAAAA
1 AAAAGCAA-AAGCACAAAA
*
2483147 GAAA-CAAAAATG-A-AAAA
1 AAAAGC-AAAA-GCACAAAA
2483164 AAAAGCAAAAGCA
1 AAAAGCAAAAGCA
2483177 AAATCAGAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 15
0.65 0.07 0.27
Matches are distributed among these distances:
16 1 0.03
17 25 0.69
18 10 0.28
ACGTcount: A:0.72, C:0.12, G:0.11, T:0.05
Consensus pattern (18 bp):
AAAAGCAAAAGCACAAAA
Found at i:2484499 original size:66 final size:66
Alignment explanation
Indices: 2484407--2484532 Score: 182
Period size: 66 Copynumber: 1.9 Consensus size: 66
2484397 GCACCCTTTT
* *
2484407 AAGTCTACAACTCCGTGGCA-CTTTTTTTTTTTTAAAGTCCACAACTCCATGGCACCTTTTTCTT
1 AAGTCCACAACTCCGTGGCACCTTTTTTCTTTTT-AAGTCCACAACTCCATGGCACCTTTTTCTT
2484471 CA
65 CA
* * * *
2484473 AAGTCCACAACTTCGTGGCACCTTTTTTCTTTTTGAGTCCATAACTCTATGGCACCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTTCTTTTTAAGTCCACAACTCCATGGCACCTTTT
2484533 AGTCCTCAAA
Statistics
Matches: 53, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
66 41 0.77
67 12 0.23
ACGTcount: A:0.21, C:0.27, G:0.12, T:0.40
Consensus pattern (66 bp):
AAGTCCACAACTCCGTGGCACCTTTTTTCTTTTTAAGTCCACAACTCCATGGCACCTTTTTCTTC
A
Found at i:2484526 original size:34 final size:34
Alignment explanation
Indices: 2484403--2484532 Score: 124
Period size: 34 Copynumber: 3.9 Consensus size: 34
2484393 TGTGGCACCC
* ** *
2484403 TTTTAAGTCTACAACTCCGTGGCA-CTTTTTTTT
1 TTTTAAGTCCACAACTCTATGGCACCTTTTTTCT
*
2484436 TTTTAAAGTCCACAACTCCATGGCACC-TTTTTC-
1 TTTT-AAGTCCACAACTCTATGGCACCTTTTTTCT
** *
2484469 TTCAAAGTCCACAACT-TCGTGGCACCTTTTTTCT
1 TTTTAAGTCCACAACTCT-ATGGCACCTTTTTTCT
* *
2484503 TTTTGAGTCCATAACTCTATGGCACCTTTT
1 TTTTAAGTCCACAACTCTATGGCACCTTTT
2484533 AGTCCTCAAA
Statistics
Matches: 79, Mismatches: 12, Indels: 11
0.77 0.12 0.11
Matches are distributed among these distances:
32 19 0.24
33 12 0.15
34 46 0.58
35 2 0.03
ACGTcount: A:0.21, C:0.26, G:0.12, T:0.42
Consensus pattern (34 bp):
TTTTAAGTCCACAACTCTATGGCACCTTTTTTCT
Found at i:2484677 original size:34 final size:34
Alignment explanation
Indices: 2484633--2484776 Score: 99
Period size: 34 Copynumber: 4.0 Consensus size: 34
2484623 TCCCCTTTTA
* *
2484633 TCCTTAAAGAGCAAGATGCACTTCATTTCCTTTG
1 TCCTCAAAGAGCAAGACGCACTTCATTTCCTTTG
* *
2484667 TCCTCAAAGAGCAGGACGCACTTTATTTCTTTTTCTCTTTTG
1 TCCTCAAAGAGCAAGACGCAC-----TTC-ATTTC-C-TTTG
* * ** *
2484709 TCCTTAAAGAGCATGACATACTTCATTTTCTTTTG
1 TCCTCAAAGAGCAAGACGCACTTCA-TTTCCTTTG
* * *
2484744 TCCTCAAAGAGCAAGATGTACGTCATTTCCTTT
1 TCCTCAAAGAGCAAGACGCACTTCATTTCCTTT
2484777 TTTTTCCTTT
Statistics
Matches: 85, Mismatches: 16, Indels: 18
0.71 0.13 0.15
Matches are distributed among these distances:
34 25 0.29
35 24 0.28
37 7 0.08
39 3 0.04
40 4 0.05
41 1 0.01
42 21 0.25
ACGTcount: A:0.24, C:0.23, G:0.14, T:0.39
Consensus pattern (34 bp):
TCCTCAAAGAGCAAGACGCACTTCATTTCCTTTG
Found at i:2484770 original size:35 final size:35
Alignment explanation
Indices: 2484702--2484777 Score: 98
Period size: 35 Copynumber: 2.2 Consensus size: 35
2484692 TTTCTTTTTC
* * *
2484702 TCTTTTGTCCTTAAAGAGCATGACATACTTCATTT
1 TCTTTTGTCCTCAAAGAGCAAGACATACGTCATTT
**
2484737 TCTTTTGTCCTCAAAGAGCAAGATGTACGTCATTT
1 TCTTTTGTCCTCAAAGAGCAAGACATACGTCATTT
*
2484772 CCTTTT
1 TCTTTT
2484778 TTTTCCTTTG
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.24, C:0.21, G:0.13, T:0.42
Consensus pattern (35 bp):
TCTTTTGTCCTCAAAGAGCAAGACATACGTCATTT
Found at i:2484853 original size:34 final size:35
Alignment explanation
Indices: 2484779--2484856 Score: 95
Period size: 36 Copynumber: 2.2 Consensus size: 35
2484769 TTTCCTTTTT
* *
2484779 TTTCCTTTGTCCTAAAAGAGCAAGACACCCACTTCC
1 TTTCTTTTGTCCTAAAAGAGCAAGACA-CCACTTCA
* * *
2484815 TTTCTTTTGTCCTCAAGGAGCAGGACA-CACTTCA
1 TTTCTTTTGTCCTAAAAGAGCAAGACACCACTTCA
2484849 TTTCTTTT
1 TTTCTTTT
2484857 TTTCCTTTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
34 14 0.38
36 23 0.62
ACGTcount: A:0.23, C:0.28, G:0.13, T:0.36
Consensus pattern (35 bp):
TTTCTTTTGTCCTAAAAGAGCAAGACACCACTTCA
Found at i:2484931 original size:82 final size:82
Alignment explanation
Indices: 2484812--2485007 Score: 225
Period size: 82 Copynumber: 2.4 Consensus size: 82
2484802 GACACCCACT
* *
2484812 TCCTTTCTTTTGTCCTCAAGGAGCAGGACACACTTCATTT-CTTTTTTTCCTTTATCCTCAAAAA
1 TCCTTTTTTTTGTCCTCAAAGAGCAGGACACACTTCATTTGC-TTTTTTCCTTTATCCTCAAAAA
*
2484876 GTAGAACGCACTTCA-TC
65 GCAGAACGCACTTCATTC
* * * *
2484893 TCCTTTTTTTCTGTCTTCAAAGAGCAGGACACACTTCATTTGCTTTTTTCCTTTGTCTTCAAAGA
1 TCCTTTTTTT-TGTCCTCAAAGAGCAGGACACACTTCATTTGCTTTTTTCCTTTATCCTCAAAAA
* * *
2484958 GCAGTATGCATTTCATTC
65 GCAGAACGCACTTCATTC
* *
2484976 TCCTTTTTCCTTTTGTCCTTAACGAGCAGGAC
1 TCC-TTTT--TTTTGTCCTCAAAGAGCAGGAC
2485008 GCTTTCTTTT
Statistics
Matches: 96, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
81 9 0.09
82 58 0.60
83 6 0.06
84 4 0.04
85 16 0.17
86 3 0.03
ACGTcount: A:0.21, C:0.26, G:0.13, T:0.41
Consensus pattern (82 bp):
TCCTTTTTTTTGTCCTCAAAGAGCAGGACACACTTCATTTGCTTTTTTCCTTTATCCTCAAAAAG
CAGAACGCACTTCATTC
Found at i:2484960 original size:42 final size:41
Alignment explanation
Indices: 2484658--2485007 Score: 222
Period size: 42 Copynumber: 8.6 Consensus size: 41
2484648 ATGCACTTCA
* *
2484658 TTTCCTTTGTCCTCAAAGAGCAGGACGCACTTTATTTCTTT
1 TTTCCTTTGTCCTCAAAGAGCAGGACACACTTCATTTCTTT
* * * *
2484699 TTCTCTTTTGTCCTTAAAGAGCATGACATACTTCA------T
1 TT-TCCTTTGTCCTCAAAGAGCAGGACACACTTCATTTCTTT
* * *** *
2484735 TTTCTTTTGTCCTCAAAGAGCAAGATGTACGTCATTTCCTTTTT
1 TTTCCTTTGTCCTCAAAGAGCAGGACACACTTCATTT-C--TTT
* * * *
2484779 TTTCCTTTGTCCTAAAAGAGCAAGACAC-C--CACTTC--C
1 TTTCCTTTGTCCTCAAAGAGCAGGACACACTTCATTTCTTT
* *
2484815 TTTCTTTTGTCCTCAAGGAGCAGGACACACTTCATTTCTTTT
1 TTTCCTTTGTCCTCAAAGAGCAGGACACACTTCATTTC-TTT
* * * * * *
2484857 TTTCCTTTATCCTCAAAAAGTAGAACGCACTTCATCTCCTTT
1 TTTCCTTTGTCCTCAAAGAGCAGGACACACTTCAT-TTCTTT
* *
2484899 TTT--TCTGTCTTCAAAGAGCAGGACACACTTCATTTGCTTT
1 TTTCCTTTGTCCTCAAAGAGCAGGACACACTTCATTT-CTTT
* * ** * *
2484939 TTTCCTTTGTCTTCAAAGAGCAGTATGCATTTCATTCTCCTT
1 TTTCCTTTGTCCTCAAAGAGCAGGACACACTTCATT-TCTTT
* *
2484981 TTTCCTTTTGTCCTTAACGAGCAGGAC
1 TTTCC-TTTGTCCTCAAAGAGCAGGAC
2485008 GCTTTCTTTT
Statistics
Matches: 236, Mismatches: 51, Indels: 42
0.72 0.16 0.13
Matches are distributed among these distances:
35 27 0.11
36 27 0.11
37 1 0.00
39 6 0.03
40 31 0.13
41 6 0.03
42 94 0.40
43 20 0.08
44 24 0.10
ACGTcount: A:0.22, C:0.25, G:0.13, T:0.40
Consensus pattern (41 bp):
TTTCCTTTGTCCTCAAAGAGCAGGACACACTTCATTTCTTT
Found at i:2485003 original size:43 final size:42
Alignment explanation
Indices: 2484815--2485073 Score: 165
Period size: 42 Copynumber: 6.2 Consensus size: 42
2484805 ACCCACTTCC
* * * * * *
2484815 TTTCTTTTGTCCTCAAGGAGCAGGACACACTTCATT-TCTTTT
1 TTTCCTTTGTCCTTAAAGAGCAGGACGCATTTCATTCTC-CTT
* * * * * *
2484857 TTTCCTTTATCCTCAAAAAGTAGAACGCACTTCA-TCTCCTT
1 TTTCCTTTGTCCTTAAAGAGCAGGACGCATTTCATTCTCCTT
* * *
2484898 TTT--TTCTGT-CTTCAAAGAGCAGGACACACTTCATT-TGCTTT
1 TTTCCTT-TGTCCTT-AAAGAGCAGGACGCATTTCATTCT-CCTT
* *
2484939 TTTCCTTTGT-CTTCAAAGAGCAGTATGCATTTCATTCTCCTT
1 TTTCCTTTGTCCTT-AAAGAGCAGGACGCATTTCATTCTCCTT
* * *
2484981 TTTCCTTTTGTCCTTAACGAGCAGGACGC-TTTCTTTTTTCCCTT
1 TTTCC-TTTGTCCTTAAAGAGCAGGACGCATTTC-ATTCT-CCTT
* * * *
2485025 TTTCCTTTGTCCTTAAGGAGTAGGACCCATTTCATTCTTCTT
1 TTTCCTTTGTCCTTAAAGAGCAGGACGCATTTCATTCTCCTT
*
2485067 TGTCCTT
1 TTTCCTT
2485074 GAAGAGTAGG
Statistics
Matches: 172, Mismatches: 32, Indels: 26
0.75 0.14 0.11
Matches are distributed among these distances:
39 4 0.02
40 19 0.11
41 13 0.08
42 75 0.44
43 45 0.26
44 16 0.09
ACGTcount: A:0.19, C:0.25, G:0.13, T:0.44
Consensus pattern (42 bp):
TTTCCTTTGTCCTTAAAGAGCAGGACGCATTTCATTCTCCTT
Found at i:2485207 original size:31 final size:30
Alignment explanation
Indices: 2485172--2485246 Score: 89
Period size: 31 Copynumber: 2.4 Consensus size: 30
2485162 AGCCCATAAG
*
2485172 AGTTGGTGGCACCCTAGTCAAAGCTCGCACA-
1 AGTTGGTGGCACCCGAGTCAAAG-TC-CACAC
**
2485203 AGTTGACGGCACCCGAGTCAAAGTCCACAC
1 AGTTGGTGGCACCCGAGTCAAAGTCCACAC
2485233 GAGTTGGTGGCACC
1 -AGTTGGTGGCACC
2485247 TAAGTTCGAG
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
29 4 0.11
30 2 0.05
31 31 0.84
ACGTcount: A:0.25, C:0.29, G:0.28, T:0.17
Consensus pattern (30 bp):
AGTTGGTGGCACCCGAGTCAAAGTCCACAC
Found at i:2485429 original size:149 final size:149
Alignment explanation
Indices: 2485145--2485429 Score: 383
Period size: 149 Copynumber: 1.9 Consensus size: 149
2485135 AACCCTTTCA
* * * *
2485145 AAGCTTTAGAATGCCAAAGCCCATAAGAGTTGGTGGCACCCTAGTCAAAGCTCGCACAAGTTGAC
1 AAGCCTTAAAATGCCAAAGCCCACAAGAGTTGGTGGCACCCTAGTCAAAGCTCACACAAGTTGAC
* ** * * *
2485210 GGCACCCGAGTCAAAGTCCACACGAGTTGGTGGCACCTAAGTTCGAGTCAAGTCTACATTAGTTG
66 AGCACCCGAGTCAAACCCCACACGAGTTAGTGGCACCTAAGTCCGAGTCAAGTCCACATTAGTTG
2485275 GCACCTATCTAAGGAGGTT
131 GCACCTATCTAAGGAGGTT
* * *** * *
2485294 AAGCCTTAAAATGGCAAAGCCCACACGAGTTGGTGGCATTTTAGTCAAAGC-CTACATAAGTTGG
1 AAGCCTTAAAATGCCAAAGCCCACAAGAGTTGGTGGCACCCTAGTCAAAGCTC-ACACAAGTTGA
* *
2485358 CAGCACCCGAGTCAAACCCCACATGAGTTAGTGGCACCTAAGTCCGAGTCATGTCCACATTAGTT
65 CAGCACCCGAGTCAAACCCCACACGAGTTAGTGGCACCTAAGTCCGAGTCAAGTCCACATTAGTT
2485423 GGCACCT
130 GGCACCT
2485430 GGCTAAGAAA
Statistics
Matches: 116, Mismatches: 19, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
148 1 0.01
149 115 0.99
ACGTcount: A:0.29, C:0.25, G:0.24, T:0.22
Consensus pattern (149 bp):
AAGCCTTAAAATGCCAAAGCCCACAAGAGTTGGTGGCACCCTAGTCAAAGCTCACACAAGTTGAC
AGCACCCGAGTCAAACCCCACACGAGTTAGTGGCACCTAAGTCCGAGTCAAGTCCACATTAGTTG
GCACCTATCTAAGGAGGTT
Found at i:2485976 original size:20 final size:20
Alignment explanation
Indices: 2485951--2485990 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
2485941 AAATTCAATT
2485951 AGTGAATGTATCGATACATG
1 AGTGAATGTATCGATACATG
2485971 AGTGAATGTATCGATACATG
1 AGTGAATGTATCGATACATG
2485991 TCTCAAATGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.10, G:0.25, T:0.30
Consensus pattern (20 bp):
AGTGAATGTATCGATACATG
Found at i:2486069 original size:20 final size:20
Alignment explanation
Indices: 2486044--2486089 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
2486034 AAATTATATT
**
2486044 GATACATAAGTAAATGTATC
1 GATACATAACCAAATGTATC
**
2486064 GATACATTCCCAAATGTATC
1 GATACATAACCAAATGTATC
2486084 GATACA
1 GATACA
2486090 GTTTGCTTTG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.41, C:0.17, G:0.13, T:0.28
Consensus pattern (20 bp):
GATACATAACCAAATGTATC
Found at i:2493471 original size:77 final size:77
Alignment explanation
Indices: 2493384--2493536 Score: 200
Period size: 77 Copynumber: 2.0 Consensus size: 77
2493374 TTAAAAAACG
* * * **
2493384 AAAAAATTCCAAAATGGACTGTAGTTT-AACAGAAAAATTAACCAAATCCAAAATATTTATCTAA
1 AAAAAATTCCAAAATGGACTCTAATTTGAA-AGAAAAAATAACCAAATCCAAAATATTTATAAAA
*
2493448 AATATTTAAAGAT
65 AAAATTTAAAGAT
* * **
2493461 AAAAAATTCCAAAGTGGATTCTAATTTGAAAGAAAAAATAACTGAATCCAAAATATTTATAAAAA
1 AAAAAATTCCAAAATGGACTCTAATTTGAAAGAAAAAATAACCAAATCCAAAATATTTATAAAAA
2493526 AAATTTAAAGA
66 AAATTTAAAGA
2493537 GAATAAGAAA
Statistics
Matches: 65, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
77 63 0.97
78 2 0.03
ACGTcount: A:0.54, C:0.10, G:0.08, T:0.27
Consensus pattern (77 bp):
AAAAAATTCCAAAATGGACTCTAATTTGAAAGAAAAAATAACCAAATCCAAAATATTTATAAAAA
AAATTTAAAGAT
Found at i:2494425 original size:61 final size:60
Alignment explanation
Indices: 2494271--2494484 Score: 170
Period size: 60 Copynumber: 3.5 Consensus size: 60
2494261 AATTACAGCA
* * * *
2494271 AAACCTTTAGTCAAAAAGGTGACCAAAGTGAAACATTTAGTTAAAACGATGACTAGGATG
1 AAACCTTTAGTCAAAAAGGTGACTAAGGTGAAACATTTAGTCAAAACGATGACTAGGACG
*
2494331 AAA-CTTTAAGTCAAAAAGGTG-GTAAGGGTGAAAC-TTTAGGTCAAAACTGATGACCTA-GACG
1 AAACCTTT-AGTCAAAAAGGTGACTAA-GGTGAAACATTTA-GTCAAAAC-GATGA-CTAGGACG
* * * * * * * * *
2494392 AAACCTTTAGTCAAAATA-GTGACTAAGGCGAAACCTTAAATTGAAAA-TATGACCAAGATG
1 AAACCTTTAGTCAAAA-AGGTGACTAAGGTGAAACATT-TAGTCAAAACGATGACTAGGACG
* * *
2494452 AAACCTTAAGTCAAAAAGATGACCAAGGTGAAA
1 AAACCTTTAGTCAAAAAGGTGACTAAGGTGAAA
2494485 TCTTAAGTTG
Statistics
Matches: 125, Mismatches: 17, Indels: 24
0.75 0.10 0.14
Matches are distributed among these distances:
59 13 0.10
60 64 0.51
61 29 0.23
62 18 0.14
63 1 0.01
ACGTcount: A:0.44, C:0.14, G:0.20, T:0.22
Consensus pattern (60 bp):
AAACCTTTAGTCAAAAAGGTGACTAAGGTGAAACATTTAGTCAAAACGATGACTAGGACG
Found at i:2494455 original size:30 final size:30
Alignment explanation
Indices: 2494421--2494497 Score: 100
Period size: 30 Copynumber: 2.6 Consensus size: 30
2494411 TGACTAAGGC
* *
2494421 GAAACCTTAAATTGAAAATATGACCAAGAT
1 GAAACCTTAAGTTGAAAAGATGACCAAGAT
** *
2494451 GAAACCTTAAGTCAAAAAGATGACCAAGGT
1 GAAACCTTAAGTTGAAAAGATGACCAAGAT
*
2494481 GAAATCTTAAGTTGAAA
1 GAAACCTTAAGTTGAAA
2494498 CAGTGGCTAA
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.48, C:0.13, G:0.17, T:0.22
Consensus pattern (30 bp):
GAAACCTTAAGTTGAAAAGATGACCAAGAT
Found at i:2494777 original size:32 final size:31
Alignment explanation
Indices: 2494672--2494794 Score: 85
Period size: 32 Copynumber: 4.0 Consensus size: 31
2494662 CAATTAGTCT
* * *
2494672 AAAAAGAT-ACTAGGACAAAAACTAATAA-TC
1 AAAAAGATGACTAGGATAAAACCT-ATAATTA
* * *
2494702 AAAAGGATGACTAGGTTAAAACCTAAAAGTTA
1 AAAAAGATGACTAGGATAAAACCTATAA-TTA
* *
2494734 AAAGATG-TGACTAGGATGAAACCTATTAATTA
1 AAA-AAGATGACTAGGATAAAACCTA-TAATTA
*
2494766 AAAAAGATGACTAAGG-CAAAACCT-TAATT
1 AAAAAGATGACT-AGGATAAAACCTATAATT
2494795 GGAAATAATG
Statistics
Matches: 73, Mismatches: 13, Indels: 14
0.73 0.13 0.14
Matches are distributed among these distances:
30 15 0.21
31 14 0.19
32 37 0.51
33 7 0.10
ACGTcount: A:0.51, C:0.11, G:0.15, T:0.22
Consensus pattern (31 bp):
AAAAAGATGACTAGGATAAAACCTATAATTA
Found at i:2495822 original size:39 final size:39
Alignment explanation
Indices: 2495768--2495844 Score: 145
Period size: 39 Copynumber: 2.0 Consensus size: 39
2495758 GTATCGATAC
2495768 ATAGGTAGTTGTATCAATACATAAAGGTTGACTTAAGCA
1 ATAGGTAGTTGTATCAATACATAAAGGTTGACTTAAGCA
*
2495807 ATAGGTATTTGTATCAATACATAAAGGTTGACTTAAGC
1 ATAGGTAGTTGTATCAATACATAAAGGTTGACTTAAGC
2495845 TACTAAGGTC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.38, C:0.10, G:0.19, T:0.32
Consensus pattern (39 bp):
ATAGGTAGTTGTATCAATACATAAAGGTTGACTTAAGCA
Found at i:2495926 original size:13 final size:13
Alignment explanation
Indices: 2495908--2495932 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2495898 ATATTGCTGA
2495908 GTATCGATACATT
1 GTATCGATACATT
2495921 GTATCGATACAT
1 GTATCGATACAT
2495933 ATTGCTTAGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:2495929 original size:33 final size:33
Alignment explanation
Indices: 2495887--2495962 Score: 134
Period size: 33 Copynumber: 2.3 Consensus size: 33
2495877 CACACCTAGA
*
2495887 TGTATCGATACATATTGCTGAGTATCGATACAT
1 TGTATCGATACATATTGCTGAGCATCGATACAT
*
2495920 TGTATCGATACATATTGCTTAGCATCGATACAT
1 TGTATCGATACATATTGCTGAGCATCGATACAT
2495953 TGTATCGATA
1 TGTATCGATA
2495963 TATGTTCATA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 41 1.00
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.37
Consensus pattern (33 bp):
TGTATCGATACATATTGCTGAGCATCGATACAT
Found at i:2497217 original size:89 final size:89
Alignment explanation
Indices: 2496939--2497360 Score: 316
Period size: 89 Copynumber: 4.8 Consensus size: 89
2496929 CAAATGCTTG
* ** * *
2496939 TGAAATAATGCTAATGCAAGTATCAATGAAAAA-GCAAATGCATAAGAAATGATGCAAATGCCAA
1 TGAAATAATGCAAATGCAAGTATCAAT-AAAAAGGCAAATGCATGTGAAACGATGTAAATGCCAA
*
2497003 --T-ATCACATAATGATATAGATGCACA
65 TGTAATCAAATAATG-TA-A-ATGCACA
* * * * ** * * * * *
2497028 TGAAACAATGCAAATGAAAGTATCAATAAAGAGGAAAACACACGTG-AACAACGTAAATGCTACT
1 TGAAATAATGCAAATGCAAGTATCAATAAAAAGGCAAATGCATGTGAAACGATGTAAATGCCAAT
** ** *
2497092 GTAATCAAATGTTGTGGATGCATA
66 GTAATCAAATAATGTAAATGCACA
* * * *
2497116 TAAAATGATGCAAATGCAAGTATCAATAAAAAGGCAAATGCATGTGAAACAATGTAGATGCCAAT
1 TGAAATAATGCAAATGCAAGTATCAATAAAAAGGCAAATGCATGTGAAACGATGTAAATGCCAAT
*
2497181 GTAATCAAATAATGTAAATGCACG
66 GTAATCAAATAATGTAAATGCACA
* * * * * * * *
2497205 CGAAACAATGCAAATACAAATATCAACAAAAAGACAAATGCACT-TCAAATGATGTAAATGCCAA
1 TGAAATAATGCAAATGCAAGTATCAATAAAAAGGCAAATGCA-TGTGAAACGATGTAAATGCCAA
* * ** * *
2497269 TGTCATCTAATGGTGCAGATGCACA
65 TGTAATCAAATAATGTAAATGCACA
* * * * * * * *
2497294 TAAAATGATACAAATGCAAGTGTAAATAAAAAGGCAAATACAAGTGAAACGATGCAAATGCCAAT
1 TGAAATAATGCAAATGCAAGTATCAATAAAAAGGCAAATGCATGTGAAACGATGTAAATGCCAAT
2497359 GT
66 GT
2497361 TGTCTAATGG
Statistics
Matches: 250, Mismatches: 76, Indels: 14
0.74 0.22 0.04
Matches are distributed among these distances:
88 58 0.23
89 181 0.72
90 3 0.01
91 8 0.03
ACGTcount: A:0.47, C:0.14, G:0.17, T:0.21
Consensus pattern (89 bp):
TGAAATAATGCAAATGCAAGTATCAATAAAAAGGCAAATGCATGTGAAACGATGTAAATGCCAAT
GTAATCAAATAATGTAAATGCACA
Found at i:2498614 original size:21 final size:22
Alignment explanation
Indices: 2498571--2498623 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 22
2498561 TTATTTGCAC
* *
2498571 TTTTTCTTTTCATTTTGTGCTT
1 TTTTTCCTTTCATTTTCTGCTT
*
2498593 TTTTTCCTTTCTTTTTCT-CTT
1 TTTTTCCTTTCATTTTCTGCTT
* *
2498614 TCTCTCCTTT
1 TTTTTCCTTT
2498624 TGTTTTTGTC
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
21 11 0.42
22 15 0.58
ACGTcount: A:0.02, C:0.23, G:0.04, T:0.72
Consensus pattern (22 bp):
TTTTTCCTTTCATTTTCTGCTT
Found at i:2501702 original size:20 final size:19
Alignment explanation
Indices: 2501679--2501730 Score: 77
Period size: 19 Copynumber: 2.7 Consensus size: 19
2501669 AAGCCCAGAA
* *
2501679 GTATCGATACATGTTGCTTT
1 GTATCGATACATGCT-CATT
2501699 GTATCGATACATGCTCATT
1 GTATCGATACATGCTCATT
2501718 GTATCGATACATG
1 GTATCGATACATG
2501731 AAGAATTGTA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 16 0.53
20 14 0.47
ACGTcount: A:0.25, C:0.17, G:0.19, T:0.38
Consensus pattern (19 bp):
GTATCGATACATGCTCATT
Found at i:2501721 original size:19 final size:20
Alignment explanation
Indices: 2501679--2501750 Score: 83
Period size: 20 Copynumber: 3.6 Consensus size: 20
2501669 AAGCCCAGAA
* *
2501679 GTATCGATACATGTTGCTTT
1 GTATCGATACATGCTGCATT
2501699 GTATCGATACATGCT-CATT
1 GTATCGATACATGCTGCATT
** *
2501718 GTATCGATACATGAAGAATT
1 GTATCGATACATGCTGCATT
*
2501738 GTATTGATACATG
1 GTATCGATACATG
2501751 AAACTGGAAG
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
19 16 0.36
20 29 0.64
ACGTcount: A:0.29, C:0.14, G:0.19, T:0.38
Consensus pattern (20 bp):
GTATCGATACATGCTGCATT
Found at i:2503890 original size:15 final size:15
Alignment explanation
Indices: 2503865--2503907 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
2503855 AAATAAATAA
2503865 AAAATTGTTGAAAATG
1 AAAATTGTTGAAAA-G
*
2503881 -AAATTCTTGAAAAG
1 AAAATTGTTGAAAAG
2503895 AAAATTGTTGAAA
1 AAAATTGTTGAAA
2503908 TGGAAAAAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 1 0.04
15 23 0.96
ACGTcount: A:0.51, C:0.02, G:0.16, T:0.30
Consensus pattern (15 bp):
AAAATTGTTGAAAAG
Found at i:2507380 original size:33 final size:33
Alignment explanation
Indices: 2507337--2507403 Score: 80
Period size: 33 Copynumber: 2.0 Consensus size: 33
2507327 TTCAACGATT
2507337 TGTATCGATACATAGAGTGTTGTATCGATACAA
1 TGTATCGATACATAGAGTGTTGTATCGATACAA
* * *** *
2507370 TGTATTGATACGTATTTTTTTGTATCGATACAA
1 TGTATCGATACATAGAGTGTTGTATCGATACAA
2507403 T
1 T
2507404 TTAAGCTACT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.30, C:0.10, G:0.18, T:0.42
Consensus pattern (33 bp):
TGTATCGATACATAGAGTGTTGTATCGATACAA
Found at i:2507462 original size:13 final size:13
Alignment explanation
Indices: 2507444--2507468 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2507434 ATTACTCAAA
2507444 TGTATCGATACAT
1 TGTATCGATACAT
2507457 TGTATCGATACA
1 TGTATCGATACA
2507469 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2507518 original size:52 final size:51
Alignment explanation
Indices: 2507457--2507603 Score: 206
Period size: 51 Copynumber: 2.9 Consensus size: 51
2507447 ATCGATACAT
*** *
2507457 TGTATCGATACACTGATCTTTGTATCGATACATGCAGGCAAATTTGCCTAGA
1 TGTATCGATACACT-ATAAATGTATCGATACATGCAGGCAAATTTGCCCAGA
*
2507509 TGTATCGATACATTATAAAATGTATCGATACATGCAGGC-AATTTGCCCAGA
1 TGTATCGATACACTAT-AAATGTATCGATACATGCAGGCAAATTTGCCCAGA
* *
2507560 TGTATCGATACACTTTAAATGTATCGATACATGCAGGTAAATTT
1 TGTATCGATACACTATAAATGTATCGATACATGCAGGCAAATTT
2507604 TCATATTTCG
Statistics
Matches: 85, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
50 21 0.25
51 32 0.38
52 32 0.38
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.33
Consensus pattern (51 bp):
TGTATCGATACACTATAAATGTATCGATACATGCAGGCAAATTTGCCCAGA
Found at i:2524455 original size:23 final size:23
Alignment explanation
Indices: 2524436--2524491 Score: 78
Period size: 22 Copynumber: 2.5 Consensus size: 23
2524426 AAAAAAAAGA
2524436 AAAAAAACAAACAAACAAAAAAT
1 AAAAAAACAAACAAACAAAAAAT
* *
2524459 AACAAAATAAACAAAC-AAAAAT
1 AAAAAAACAAACAAACAAAAAAT
*
2524481 AAACAAACAAA
1 AAAAAAACAAA
2524492 AAAAGTAAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
22 14 0.50
23 14 0.50
ACGTcount: A:0.80, C:0.14, G:0.00, T:0.05
Consensus pattern (23 bp):
AAAAAAACAAACAAACAAAAAAT
Found at i:2524462 original size:14 final size:13
Alignment explanation
Indices: 2524410--2524495 Score: 86
Period size: 13 Copynumber: 6.5 Consensus size: 13
2524400 GTCCTCCGCA
* *
2524410 AAAAAAAATAAAG
1 AAAAAAAACAAAC
* *
2524423 AAGAAAAA-AAAG
1 AAAAAAAACAAAC
2524435 AAAAAAAACAAAC
1 AAAAAAAACAAAC
2524448 AAACAAAAA-ATAAC
1 AAA-AAAAACA-AAC
*
2524462 AAAATAAACAAAC
1 AAAAAAAACAAAC
2524475 AAAAATAAACAAAC
1 AAAAA-AAACAAAC
2524489 AAAAAAA
1 AAAAAAA
2524496 GTAAAAAGGG
Statistics
Matches: 63, Mismatches: 5, Indels: 10
0.81 0.06 0.13
Matches are distributed among these distances:
12 11 0.17
13 27 0.43
14 25 0.40
ACGTcount: A:0.83, C:0.09, G:0.03, T:0.05
Consensus pattern (13 bp):
AAAAAAAACAAAC
Found at i:2525961 original size:29 final size:29
Alignment explanation
Indices: 2525921--2526064 Score: 186
Period size: 28 Copynumber: 5.1 Consensus size: 29
2525911 ATTCCTCACT
2525921 TTTTC-AAAGCCCACAAGTTAGTGGCATC
1 TTTTCAAAAGCCCACAAGTTAGTGGCATC
* * *
2525949 TTTTCCAAAGCCCACAAGTCAGTGGCAAC
1 TTTTCAAAAGCCCACAAGTTAGTGGCATC
*
2525978 -CTTCAAAAGCCCACAAGTTAGTGGCATC
1 TTTTCAAAAGCCCACAAGTTAGTGGCATC
* *
2526006 TTTTCAAAAGCCCACAAGTCAGTGGCAAC
1 TTTTCAAAAGCCCACAAGTTAGTGGCATC
* * *
2526035 -CTTCAAAAGCACACAAGTTGGTGGCATC
1 TTTTCAAAAGCCCACAAGTTAGTGGCATC
2526063 TT
1 TT
2526065 CTTCTAAGTC
Statistics
Matches: 98, Mismatches: 15, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
28 52 0.53
29 46 0.47
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (29 bp):
TTTTCAAAAGCCCACAAGTTAGTGGCATC
Found at i:2525995 original size:28 final size:29
Alignment explanation
Indices: 2525926--2526052 Score: 168
Period size: 29 Copynumber: 4.4 Consensus size: 29
2525916 TCACTTTTTC
* * * *
2525926 AAAGCCCACAAGTTAGTGGCATCTTTTCC
1 AAAGCCCACAAGTCAGTGGCAACTCTTCA
2525955 AAAGCCCACAAGTCAGTGGCAAC-CTTCA
1 AAAGCCCACAAGTCAGTGGCAACTCTTCA
* * *
2525983 AAAGCCCACAAGTTAGTGGCATCTTTTCA
1 AAAGCCCACAAGTCAGTGGCAACTCTTCA
2526012 AAAGCCCACAAGTCAGTGGCAAC-CTTCA
1 AAAGCCCACAAGTCAGTGGCAACTCTTCA
*
2526040 AAAGCACACAAGT
1 AAAGCCCACAAGT
2526053 TGGTGGCATC
Statistics
Matches: 86, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
28 40 0.47
29 46 0.53
ACGTcount: A:0.35, C:0.28, G:0.17, T:0.20
Consensus pattern (29 bp):
AAAGCCCACAAGTCAGTGGCAACTCTTCA
Found at i:2526010 original size:57 final size:57
Alignment explanation
Indices: 2525926--2526064 Score: 251
Period size: 57 Copynumber: 2.4 Consensus size: 57
2525916 TCACTTTTTC
*
2525926 AAAGCCCACAAGTTAGTGGCATCTTTTCCAAAGCCCACAAGTCAGTGGCAACCTTCA
1 AAAGCCCACAAGTTAGTGGCATCTTTTCAAAAGCCCACAAGTCAGTGGCAACCTTCA
2525983 AAAGCCCACAAGTTAGTGGCATCTTTTCAAAAGCCCACAAGTCAGTGGCAACCTTCA
1 AAAGCCCACAAGTTAGTGGCATCTTTTCAAAAGCCCACAAGTCAGTGGCAACCTTCA
* *
2526040 AAAGCACACAAGTTGGTGGCATCTT
1 AAAGCCCACAAGTTAGTGGCATCTT
2526065 CTTCTAAGTC
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
57 79 1.00
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.22
Consensus pattern (57 bp):
AAAGCCCACAAGTTAGTGGCATCTTTTCAAAAGCCCACAAGTCAGTGGCAACCTTCA
Found at i:2526283 original size:48 final size:49
Alignment explanation
Indices: 2526199--2526334 Score: 148
Period size: 49 Copynumber: 2.8 Consensus size: 49
2526189 CACATTGGCA
* * * * *
2526199 TAAGCCCAATATCGCTAGCTTTGAATCGGCATATTGGCACCTT-GTCTT
1 TAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * * **
2526247 TAAGACCAATGTCGCTGGCCTTGAATCAGTACATTGGCATTTTCATCTT
1 TAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * *
2526296 TAAGTCCGATATCGTTGGCCTTGAATCAGCATATTGGCA
1 TAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCA
2526335 TCTTTAACAT
Statistics
Matches: 71, Mismatches: 16, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
48 34 0.48
49 37 0.52
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.33
Consensus pattern (49 bp):
TAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
Found at i:2535683 original size:32 final size:33
Alignment explanation
Indices: 2535609--2535686 Score: 131
Period size: 34 Copynumber: 2.4 Consensus size: 33
2535599 CATTTAATAG
2535609 TGTATCGATACATCTCGGCAAATTTGCCTGCATA
1 TGTATCGATACATCTCGGCAAATTTGCCTGCA-A
*
2535643 TGTATCGATACATCTGGGCAAATTTGCCTGC-A
1 TGTATCGATACATCTCGGCAAATTTGCCTGCAA
2535675 TGTATCGATACA
1 TGTATCGATACA
2535687 AAGATCAGTG
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
32 13 0.30
34 30 0.70
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (33 bp):
TGTATCGATACATCTCGGCAAATTTGCCTGCAA
Found at i:2535713 original size:13 final size:13
Alignment explanation
Indices: 2535695--2535719 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2535685 CAAAGATCAG
2535695 TGTATCGATACAA
1 TGTATCGATACAA
2535708 TGTATCGATACA
1 TGTATCGATACA
2535720 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2535799 original size:13 final size:13
Alignment explanation
Indices: 2535781--2535805 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2535771 ACAAAACTTA
2535781 TGTATCGATACAT
1 TGTATCGATACAT
2535794 TGTATCGATACA
1 TGTATCGATACA
2535806 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2535801 original size:32 final size:33
Alignment explanation
Indices: 2535760--2535825 Score: 116
Period size: 32 Copynumber: 2.0 Consensus size: 33
2535750 AGTAGCTTAA
2535760 ATTGTATCGATACAAAAC-TTATGTATCGATAC
1 ATTGTATCGATACAAAACTTTATGTATCGATAC
*
2535792 ATTGTATCGATACAACACTTTATGTATCGATAC
1 ATTGTATCGATACAAAACTTTATGTATCGATAC
2535825 A
1 A
2535826 AATCGTTGAA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 17 0.53
33 15 0.47
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.35
Consensus pattern (33 bp):
ATTGTATCGATACAAAACTTTATGTATCGATAC
Found at i:2542693 original size:32 final size:32
Alignment explanation
Indices: 2542652--2542727 Score: 125
Period size: 32 Copynumber: 2.4 Consensus size: 32
2542642 AAACAGTAAC
2542652 TGTATCGATACATAAGTGTTGTAGCGATACAA
1 TGTATCGATACATAAGTGTTGTAGCGATACAA
* *
2542684 TGTATCGATAAATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTAGCGATACAA
*
2542716 TGTATCGCTACA
1 TGTATCGATACA
2542728 AAGCTACTGC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 40 1.00
ACGTcount: A:0.34, C:0.13, G:0.20, T:0.33
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTAGCGATACAA
Found at i:2542784 original size:13 final size:13
Alignment explanation
Indices: 2542766--2542796 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
2542756 CATTATTCAA
2542766 TGTATCGATACAT
1 TGTATCGATACAT
2542779 TGTATCGATACAT
1 TGTATCGATACAT
2542792 T-TATC
1 TGTATC
2542797 TTTGTATGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 4 0.22
13 14 0.78
ACGTcount: A:0.29, C:0.16, G:0.13, T:0.42
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2549810 original size:12 final size:12
Alignment explanation
Indices: 2549793--2549828 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
2549783 GAGTTCCCTT
*
2549793 AAAAAAAAGAAC
1 AAAAAAAAAAAC
2549805 AAAAAAAAAAAC
1 AAAAAAAAAAAC
2549817 AAAACAAAAAAA
1 AAAA-AAAAAAA
2549829 AACACACAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 15 0.68
13 7 0.32
ACGTcount: A:0.89, C:0.08, G:0.03, T:0.00
Consensus pattern (12 bp):
AAAAAAAAAAAC
Found at i:2549813 original size:15 final size:15
Alignment explanation
Indices: 2549793--2549842 Score: 66
Period size: 15 Copynumber: 3.3 Consensus size: 15
2549783 GAGTTCCCTT
*
2549793 AAAAAAAAGAACAAA
1 AAAAAAAACAACAAA
2549808 AAAAAAAACAA-AACA
1 AAAAAAAACAACAA-A
2549823 AAAAAAAACACACAAA
1 AAAAAAAACA-ACAAA
2549839 AAAA
1 AAAA
2549843 GAGTGCAAAG
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
14 2 0.06
15 21 0.68
16 6 0.19
17 2 0.06
ACGTcount: A:0.86, C:0.12, G:0.02, T:0.00
Consensus pattern (15 bp):
AAAAAAAACAACAAA
Found at i:2549815 original size:17 final size:17
Alignment explanation
Indices: 2549793--2549830 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
2549783 GAGTTCCCTT
*
2549793 AAAAAAA-AGAACAAAA
1 AAAAAAACAAAACAAAA
2549809 AAAAAAACAAAACAAAA
1 AAAAAAACAAAACAAAA
2549826 AAAAA
1 AAAAA
2549831 CACACAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 7 0.35
17 13 0.65
ACGTcount: A:0.89, C:0.08, G:0.03, T:0.00
Consensus pattern (17 bp):
AAAAAAACAAAACAAAA
Found at i:2551168 original size:32 final size:31
Alignment explanation
Indices: 2551127--2551438 Score: 222
Period size: 32 Copynumber: 9.9 Consensus size: 31
2551117 TCTCTTCTCC
2551127 AAGTCCACGACTCAGTGGCATCTTTTTTTCCA
1 AAGTCCACGACTCAGTGGCATCTTTTTTT-CA
* * * *
2551159 AAGTTCACGAATCAGTGGCATC-TCTTTTCT
1 AAGTCCACGACTCAGTGGCATCTTTTTTTCA
* * * *
2551189 AAGTCCATGACTTAGTGGCATCCTTTTCTTCC
1 AAGTCCACGACTCAGTGGCAT-CTTTTTTTCA
* * **
2551221 GAGTCCACAACTCAGTGGCATCTTTTTCCTTTT
1 AAGTCCACGACTCAGTGGCATCTTTTT--TTCA
* * *
2551254 AAGTCCACGGCTCAGTGGCATC-TCTTTTCT
1 AAGTCCACGACTCAGTGGCATCTTTTTTTCA
*
2551284 AAGTCCACGACTCAGTGGCATCTTTTCTTCA
1 AAGTCCACGACTCAGTGGCATCTTTTTTTCA
* * *
2551315 AAGTCTATGACTTAGTGGCATCTTTTTTCTTCAA
1 AAGTCCACGACTCAGTGGCATC-TTTTT-TTC-A
* * * *
2551349 AAATCCATGACTCAGTAGCATC--TTTTCCAA
1 AAGTCCACGACTCAGTGGCATCTTTTTTTC-A
* **
2551379 AAGTCCATGACTCCA-TGGCA-CTTTTTCCTTTT
1 AAGTCCACGACT-CAGTGGCATCTTTTT--TTCA
* *
2551411 AAGTCCACAACTCCGTGGCACTCTTTTT
1 AAGTCCACGACTCAGTGGCA-TCTTTTT
2551439 CCTTTTAAGT
Statistics
Matches: 220, Mismatches: 44, Indels: 30
0.75 0.15 0.10
Matches are distributed among these distances:
29 1 0.00
30 61 0.28
31 44 0.20
32 64 0.29
33 25 0.11
34 25 0.11
ACGTcount: A:0.22, C:0.27, G:0.15, T:0.36
Consensus pattern (31 bp):
AAGTCCACGACTCAGTGGCATCTTTTTTTCA
Found at i:2551236 original size:62 final size:63
Alignment explanation
Indices: 2551117--2551437 Score: 227
Period size: 62 Copynumber: 5.1 Consensus size: 63
2551107 TCTTCAAATC
* * *
2551117 TCTCTTCTCCAAGTCCACGACTCAGTGGCATCT-TTTT-TTCCAAAGTTCACGAA-TCAGTGGCA
1 TCTCTTTTCTAAGTCCACGACTCAGTGGCATCTCTTTTCTTCC-AAGTCCAC-AACTCAGTGGCA
* * *
2551179 TCTCTTTTCTAAGTCCATGACTTAGTGGCATC-CTTTTCTTCCGAGTCCACAACTCAGTGGCA
1 TCTCTTTTCTAAGTCCACGACTCAGTGGCATCTCTTTTCTTCCAAGTCCACAACTCAGTGGCA
* *
2551241 TCT-TTTTCCTTTTAAGTCCACGGCTCAGTGGCATCTCTTTTC-T--AAGTCCACGACTCAGTGG
1 TCTCTTTT-C---TAAGTCCACGACTCAGTGGCATCTCTTTTCTTCCAAGTCCACAACTCAGTGG
2551302 CA
62 CA
* * * * * * * * ** *
2551304 TCTTTTCTTCAAAGTCTATGACTTAGTGGCATCTTTTTTCTTCAAAAATCCATGACTCAGTAGCA
1 TCTCTT-TTCTAAGTCCACGACTCAGTGGCATCTCTTTTCTTC-CAAGTCCACAACTCAGTGGCA
* * * ** *
2551369 TCT-TTTCCAAAAGTCCATGACTCCA-TGGCA-CT-TTTTCCTTTTAAGTCCACAACTCCGTGGC
1 TCTCTTTTC-TAAGTCCACGACT-CAGTGGCATCTCTTTT-CTTCCAAGTCCACAACTCAGTGGC
2551430 A
63 A
2551431 -CTCTTTT
1 TCTCTTTT
2551438 TCCTTTTAAG
Statistics
Matches: 210, Mismatches: 31, Indels: 36
0.76 0.11 0.13
Matches are distributed among these distances:
61 32 0.15
62 74 0.35
63 32 0.15
64 22 0.10
65 44 0.21
66 6 0.03
ACGTcount: A:0.21, C:0.28, G:0.15, T:0.36
Consensus pattern (63 bp):
TCTCTTTTCTAAGTCCACGACTCAGTGGCATCTCTTTTCTTCCAAGTCCACAACTCAGTGGCA
Found at i:2551290 original size:95 final size:96
Alignment explanation
Indices: 2551127--2551451 Score: 324
Period size: 95 Copynumber: 3.4 Consensus size: 96
2551117 TCTCTTCTCC
* * * *
2551127 AAGTCCACGACTCAGTGGCATCTTTTT--TTCCAAAGTTCACGAATCAGTGGCATCTCTTTTCTA
1 AAGTCCACAACTCAGTGGCATCTTTTTCCTTCTAAAGTCCACGACTCAGTGGCATCTCTTTTCTA
* *
2551190 AGTCCATGACTTAGTGGCATCCTTTTCTTCC
66 AGTCCATGACTCAGTGGCATCCTTTTCTTCA
* * *
2551221 GAGTCCACAACTCAGTGGCATCTTTTTCCTT-TTAAGTCCACGGCTCAGTGGCATCTCTTTTCTA
1 AAGTCCACAACTCAGTGGCATCTTTTTCCTTCTAAAGTCCACGACTCAGTGGCATCTCTTTTCTA
*
2551285 AGTCCACGACTCAGTGGCAT-CTTTTCTTCA
66 AGTCCATGACTCAGTGGCATCCTTTTCTTCA
* ** * * * * * * * *
2551315 AAGTCTATGACTTAGTGGCATCTTTTTTCTTCAAAAATCCATGACTCAGTAGCATCT-TTTCCAA
1 AAGTCCACAACTCAGTGGCATCTTTTTCCTTCTAAAGTCCACGACTCAGTGGCATCTCTTTTC-T
* **
2551379 AAGTCCATGACTCCA-TGGCA-CTTTTTCCTTTT
65 AAGTCCATGACT-CAGTGGCATCCTTTT-CTTCA
* *
2551411 AAGTCCACAACTCCGTGGCACTCTTTTTCCTT-TTAAGTCCA
1 AAGTCCACAACTCAGTGGCA-TCTTTTTCCTTCTAAAGTCCA
2551452 AAACTCCGTG
Statistics
Matches: 186, Mismatches: 37, Indels: 14
0.78 0.16 0.06
Matches are distributed among these distances:
94 63 0.34
95 85 0.46
96 28 0.15
97 10 0.05
ACGTcount: A:0.22, C:0.27, G:0.15, T:0.36
Consensus pattern (96 bp):
AAGTCCACAACTCAGTGGCATCTTTTTCCTTCTAAAGTCCACGACTCAGTGGCATCTCTTTTCTA
AGTCCATGACTCAGTGGCATCCTTTTCTTCA
Found at i:2551370 original size:34 final size:33
Alignment explanation
Indices: 2551130--2551404 Score: 159
Period size: 30 Copynumber: 8.7 Consensus size: 33
2551120 CTTCTCCAAG
* * *
2551130 TCCACGACTCAGTGGCATCTTTTTT-TCCAAAG
1 TCCATGACTCAGTGGCATCTTTTTTCTTCAAAA
* * * * *
2551162 TTCACGAATCAGTGGCATCTCTTTTC-T--AAG
1 TCCATGACTCAGTGGCATCTTTTTTCTTCAAAA
* * ** *
2551192 TCCATGACTTAGTGGCATC-CTTTTCTTCCGAG
1 TCCATGACTCAGTGGCATCTTTTTTCTTCAAAA
** * ** *
2551224 TCCACAACTCAGTGGCATCTTTTTCCTTTTAAG
1 TCCATGACTCAGTGGCATCTTTTTTCTTCAAAA
* * * *
2551257 TCCACGGCTCAGTGGCATCTCTTTTC-T--AAG
1 TCCATGACTCAGTGGCATCTTTTTTCTTCAAAA
* *
2551287 TCCACGACTCAGTGGCATC--TTTTCTTCAAAG
1 TCCATGACTCAGTGGCATCTTTTTTCTTCAAAA
* *
2551318 TCTATGACTTAGTGGCATCTTTTTTCTTCAAAAA
1 TCCATGACTCAGTGGCATCTTTTTTCTTC-AAAA
*
2551352 TCCATGACTCAGTAGCATC--TTTTC--CAAAA
1 TCCATGACTCAGTGGCATCTTTTTTCTTCAAAA
2551381 GTCCATGACTCCA-TGGCA-CTTTTT
1 -TCCATGACT-CAGTGGCATCTTTTT
2551405 CCTTTTAAGT
Statistics
Matches: 198, Mismatches: 30, Indels: 31
0.76 0.12 0.12
Matches are distributed among these distances:
28 5 0.03
29 12 0.06
30 54 0.27
31 24 0.12
32 46 0.23
33 38 0.19
34 19 0.10
ACGTcount: A:0.22, C:0.27, G:0.15, T:0.36
Consensus pattern (33 bp):
TCCATGACTCAGTGGCATCTTTTTTCTTCAAAA
Found at i:2551406 original size:30 final size:30
Alignment explanation
Indices: 2551287--2551391 Score: 86
Period size: 34 Copynumber: 3.3 Consensus size: 30
2551277 CTTTTCTAAG
* * *
2551287 TCCACGACTCAGTGGCATCTTTTCTTC-AAAG
1 TCCATGACTCAGTAGCATCTTTTC--CAAAAA
* * *
2551318 TCTATGACTTAGTGGCATCTTTTTTCTTCAAAAA
1 TCCATGACTCAGTAGCATC--TTTTC--CAAAAA
*
2551352 TCCATGACTCAGTAGCATCTTTTCCAAAAG
1 TCCATGACTCAGTAGCATCTTTTCCAAAAA
2551382 TCCATGACTC
1 TCCATGACTC
2551392 CATGGCACTT
Statistics
Matches: 63, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
30 15 0.24
31 16 0.25
32 5 0.08
33 8 0.13
34 19 0.30
ACGTcount: A:0.26, C:0.26, G:0.13, T:0.35
Consensus pattern (30 bp):
TCCATGACTCAGTAGCATCTTTTCCAAAAA
Found at i:2551437 original size:34 final size:33
Alignment explanation
Indices: 2551379--2551469 Score: 130
Period size: 34 Copynumber: 2.8 Consensus size: 33
2551369 TCTTTTCCAA
** *
2551379 AAGTCCATGACTCCATGGCA-CTTTTTCCTTTT
1 AAGTCCAAAACTCCGTGGCACCTTTTTCCTTTT
*
2551411 AAGTCCACAACTCCGTGGCACTCTTTTTCCTTTT
1 AAGTCCAAAACTCCGTGGCAC-CTTTTTCCTTTT
2551445 AAGTCCAAAACTCCGTGGCACCTTT
1 AAGTCCAAAACTCCGTGGCACCTTT
2551470 AAGTCCAATA
Statistics
Matches: 53, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
32 17 0.32
33 4 0.08
34 32 0.60
ACGTcount: A:0.21, C:0.31, G:0.13, T:0.35
Consensus pattern (33 bp):
AAGTCCAAAACTCCGTGGCACCTTTTTCCTTTT
Found at i:2551439 original size:157 final size:156
Alignment explanation
Indices: 2551117--2551437 Score: 368
Period size: 157 Copynumber: 2.1 Consensus size: 156
2551107 TCTTCAAATC
* * *
2551117 TCTCTTCTCCAAGTCCACGACTCAGTGGCATCTTTTTTTCCAAAGTTCACGAATCAGTGGCATCT
1 TCTCTTTTCTAAGTCCACGACTCAGTGGCATCTTTTCTTCCAAAGTTCACGAATCAGTGGCATCT
* * * **
2551182 CTTTTCTAAGTCCATGACTTAGTGGCATCCTTTTCTTCCGAGTCCACAACTCAGTGGCATCTTTT
66 CTTTTCTAAATCCATGACTCAGTAGCATCCTTTTC-TCAAAGTCCACAACTCAGTGGCATCTTTT
**
2551247 TCCTTTTAAGTCCACGGCTCAGTGGCA
130 TCCTTTTAAGTCCACAACTCAGTGGCA
* * *
2551274 TCTCTTTTCTAAGTCCACGACTCAGTGGCATCTTTTCTT-CAAAG-TCTATGACTTAGTGGCATC
1 TCTCTTTTCTAAGTCCACGACTCAGTGGCATCTTTTCTTCCAAAGTTC-ACGAATCAGTGGCATC
* **
2551337 TTTTTTCTTCAAAAATCCATGACTCAGTAGCAT-CTTTTC-CAAAAGTCCATGACTCCA-TGGCA
65 TCTTTTC-T---AAATCCATGACTCAGTAGCATCCTTTTCTC-AAAGTCCACAACT-CAGTGGCA
*
2551399 -CTTTTTCCTTTTAAGTCCACAACTCCGTGGCA
124 TCTTTTTCCTTTTAAGTCCACAACTCAGTGGCA
2551431 -CTCTTTT
1 TCTCTTTT
2551438 TCCTTTTAAG
Statistics
Matches: 140, Mismatches: 17, Indels: 15
0.81 0.10 0.09
Matches are distributed among these distances:
155 2 0.01
156 31 0.22
157 67 0.48
158 14 0.10
159 8 0.06
160 18 0.13
ACGTcount: A:0.21, C:0.28, G:0.15, T:0.36
Consensus pattern (156 bp):
TCTCTTTTCTAAGTCCACGACTCAGTGGCATCTTTTCTTCCAAAGTTCACGAATCAGTGGCATCT
CTTTTCTAAATCCATGACTCAGTAGCATCCTTTTCTCAAAGTCCACAACTCAGTGGCATCTTTTT
CCTTTTAAGTCCACAACTCAGTGGCA
Found at i:2551556 original size:49 final size:49
Alignment explanation
Indices: 2551466--2552212 Score: 536
Period size: 49 Copynumber: 15.8 Consensus size: 49
2551456 TCCGTGGCAC
* * * *
2551466 CTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCACCTTCAT
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCAT
* *
2551515 CTTTGAGACCGATGTCGCTGGCCTTGAATCAGCACATTGGCA----C--
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCAT
* * * * *
2551558 CTTTAAGTCCAATATTGCTGGCCTTGAATTAGCATATTGGCACCTTTTCCAT
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC--TT-CAT
* * * *
2551610 C-TTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-GT
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCAT
*
2551657 CTTTAAGACCAATGTTG-TGGGCCTTGAATCAGCACATTGG------CA-
1 CTTTAAGACCAATGTCGCT-GGCCTTGAATCAGCACATTGGCACCTTCAT
* * * * *
2551699 C---AAGCCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTTAT
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCAT
* *
2551745 CTTTAAGACCAATGTCGTTGGCCTTGAATCAGCACATTAGCA---T-A-
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCAT
* * * *
2551789 ----AA-CCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-GT
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCAT
*
2551832 CTTTAAGACCAATGTCGTTGGCCTTGAATCAGCACATTGG------CA-
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCAT
* * * * *
2551874 C---AAG-CCGAGTATCGCTGGCCTTGAATCAACATATT-G-ACATATCAT
1 CTTTAAGACC-AATGTCGCTGGCCTTGAATCAGCACATTGGCACCT-TCAT
* * * *
2551919 CTTTAAGTCTAATGTCCCTGGCCTTGAATCAGCACATCGGCACCTTCAT
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCAT
* * * *
2551968 CTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCATATTGGCGCCTTCGTCAT
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC-T--TCAT
* * * *
2552020 CTTTAAGTCCAATGTCGTTGGCCTTAAATCAACACATTGGCACCTTCAT
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCAT
* * * *
2552069 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCGTCAT
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-C--CTTCAT
* * * *
2552121 CTTTAAAACCTAATGTCGTTTGCCTTGAATCAGCACATTGGCATTCTTCTCAT
1 CTTTAAGACC-AATGTCGCTGGCCTTGAATCAGCACATTGGCA--CCT-TCAT
* ** *
2552174 CTTCAAGACCAATGTCGCTGATCGTGAATCAGCACATTG
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTG
2552213 ACATTCTTTA
Statistics
Matches: 554, Mismatches: 88, Indels: 109
0.74 0.12 0.15
Matches are distributed among these distances:
38 3 0.01
39 85 0.15
40 3 0.01
42 3 0.01
43 35 0.06
44 2 0.00
45 4 0.01
46 2 0.00
47 5 0.01
48 86 0.16
49 155 0.28
50 6 0.01
51 41 0.07
52 82 0.15
53 40 0.07
54 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.31
Consensus pattern (49 bp):
CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCAT
Found at i:2551720 original size:39 final size:39
Alignment explanation
Indices: 2551676--2551901 Score: 155
Period size: 39 Copynumber: 5.3 Consensus size: 39
2551666 CAATGTTGTG
2551676 GGCCTTGAATCAGCACATTGGCACAAGCCCAATATCGCT
1 GGCCTTGAATCAGCACATTGGCACAAGCCCAATATCGCT
* * * * *
2551715 AGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTCGTT
1 GGCCTTGAATCAGCACATTGG---C---A-C---AAGCCCAATATCGCT
* * *
2551764 GGCCTTGAATCAGCACATTAGCATAAACCCAATATCGCT
1 GGCCTTGAATCAGCACATTGGCACAAGCCCAATATCGCT
* * * *
2551803 GGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGTT
1 GGCCTTGAATCAGCACATTGGCA------C---AAGCCCAATATCGCT
* *
2551851 GGCCTTGAATCAGCACATTGGCACAAGCCGAGTATCGCT
1 GGCCTTGAATCAGCACATTGGCACAAGCCCAATATCGCT
2551890 GGCCTTGAATCA
1 GGCCTTGAATCA
2551902 ACATATTGAC
Statistics
Matches: 142, Mismatches: 26, Indels: 38
0.69 0.13 0.18
Matches are distributed among these distances:
39 73 0.51
42 2 0.01
43 1 0.01
45 1 0.01
46 2 0.01
48 33 0.23
49 30 0.21
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (39 bp):
GGCCTTGAATCAGCACATTGGCACAAGCCCAATATCGCT
Found at i:2551832 original size:175 final size:178
Alignment explanation
Indices: 2551607--2552164 Score: 604
Period size: 175 Copynumber: 3.0 Consensus size: 178
2551597 GCACCTTTTC
* *
2551607 CATCTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGT
1 CATCATAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGT
* * *
2551672 TGTGGGCCTTGAATCAGCACATTGGCACAAGCCCAATATCGCTAGCCTTGAATCAGCATATTGGC
66 CGTTGGCCTTGAATCAGCACATTGGCACAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGC
*
2551737 ACCTTTATCTTTAAGACCAATGTCGTTGGCCTTGAATCAGCACATTAG
131 ACCTTTATCTTTAAGACCAATGTCGTTGGCCTTGAATCAGCACATTGG
2551785 CAT-A-AA-CCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGT
1 CATCATAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGT
* * *
2551847 CGTTGGCCTTGAATCAGCACATTGGCACAAGCCGAGTATCGCTGGCCTTGAATCAACATATT-G-
66 CGTTGGCCTTGAATCAGCACATTGGCACAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGC
* * * * ** *
2551910 ACATATCATCTTTAAGTCTAATGTCCCTGGCCTTGAATCAGCACATCGG
131 ACCT-TTATCTTTAAGACCAATGTCGTTGGCCTTGAATCAGCACATTGG
* * * *
2551959 CACCTTCATCTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTT
1 CA---TCA----TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-G---TCTTT
* * * *
2552024 AAGTCCAATGTCGTTGGCCTTAAATCAACACATTGGCACCTTCATCTTTAAGTCCAATATCGCTG
55 AAGACCAATGTCGTTGGCCTTGAATCAGCACATTGG------CA-C---AAGCCCAATATCGCTG
* * *
2552089 GCCTTGAATCAGCATATTGGCATCTTCGTCATCTTTAAAACCTAATGTCGTTTGCCTTGAATCAG
110 GCCTTGAATCAGCATATTGGCACCTT--T-ATCTTTAAGACC-AATGTCGTTGGCCTTGAATCAG
2552154 CACATTGG
171 CACATTGG
2552162 CAT
1 CAT
2552165 TCTTCTCATC
Statistics
Matches: 312, Mismatches: 37, Indels: 40
0.80 0.10 0.10
Matches are distributed among these distances:
173 3 0.01
174 40 0.13
175 111 0.36
176 2 0.01
177 1 0.00
178 4 0.01
183 2 0.01
184 35 0.11
185 1 0.00
188 38 0.12
194 2 0.01
195 1 0.00
198 30 0.10
199 2 0.01
200 3 0.01
202 9 0.03
203 28 0.09
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (178 bp):
CATCATAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGT
CGTTGGCCTTGAATCAGCACATTGGCACAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGC
ACCTTTATCTTTAAGACCAATGTCGTTGGCCTTGAATCAGCACATTGG
Found at i:2551887 original size:87 final size:86
Alignment explanation
Indices: 2551617--2552163 Score: 527
Period size: 87 Copynumber: 6.0 Consensus size: 86
2551607 CATCTTAAGT
* *
2551617 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTTGTGGGCCTT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGTTGGCCTT
2551682 GAATCAGCACATTGGCACAAG
66 GAATCAGCACATTGGCACAAG
* *
2551703 CCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTCGTTGGCC
1 -CCAATATCGCTGGCCTTGAATCAGCATATTGGCACC-TTGTCTTTAAGACCAATGTCGTTGGCC
* * *
2551768 TTGAATCAGCACATTAGCATAAAC
64 TTGAATCAGCACATTGGCA-CAAG
2551792 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGTTGGCCTT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGTTGGCCTT
2551857 GAATCAGCACATTGGCACAAG
66 GAATCAGCACATTGGCACAAG
* * * ** ** * * **
2551878 CCGAGTATCGCTGGCCTTGAATCAACATATTGACATATCATCTTTAAGTCTAATGTCCCTGGCCT
1 CC-AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGTTGGCCT
*
2551943 TGAATCAGCACATCGGCACCTTCATCTTTAAG
65 TGAATCAGCACATTGG------CA-C---AAG
* * * *
2551975 TCCAATGTCGTTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAAGTCCAATGTCGTTG
1 -CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-G---TCTTTAAGACCAATGTCGTTG
* *
2552040 GCCTTAAATCAACACATTGGCACCTTCATCTTTAAG
61 GCCTTGAATCAGCACATTGG------CA-C---AAG
* *
2552076 TCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCGTCATCTTTAAAACCTAATGTCGTT
1 -CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-G---TCTTTAAGACC-AATGTCGTT
*
2552141 TGCCTTGAATCAGCACATTGGCA
60 GGCCTTGAATCAGCACATTGGCA
2552164 TTCTTCTCAT
Statistics
Matches: 392, Mismatches: 49, Indels: 29
0.83 0.10 0.06
Matches are distributed among these distances:
86 4 0.01
87 145 0.37
88 77 0.20
89 2 0.01
93 2 0.01
94 1 0.00
96 2 0.01
97 30 0.08
98 2 0.01
101 100 0.26
102 27 0.07
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.31
Consensus pattern (86 bp):
CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGTTGGCCTT
GAATCAGCACATTGGCACAAG
Found at i:2552062 original size:101 final size:101
Alignment explanation
Indices: 2551885--2552212 Score: 385
Period size: 101 Copynumber: 3.2 Consensus size: 101
2551875 AAGCCGAGTA
* * * * **
2551885 TCGCTGGCCTTGAATCAACATATT-G-A-CAT-ATCATCTTTAAGTCTAATGTCCCTGGCCTTGA
1 TCGCTGGCCTTGAATCAGCATATTGGCACCTTCGTCATCTTTAAGTCCAATGTCGTTGGCCTTGA
*
2551946 ATCAGCACATCGGCACCTTCATCTTTAAGTCCAATG
66 ATCAGCACATTGGCACCTTCATCTTTAAGTCCAATG
* * *
2551982 TCGTTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAAGTCCAATGTCGTTGGCCTTAA
1 TCGCTGGCCTTGAATCAGCATATTGGCACCTTCGTCATCTTTAAGTCCAATGTCGTTGGCCTTGA
* *
2552047 ATCAACACATTGGCACCTTCATCTTTAAGTCCAATA
66 ATCAGCACATTGGCACCTTCATCTTTAAGTCCAATG
* ** *
2552083 TCGCTGGCCTTGAATCAGCATATTGGCATCTTCGTCATCTTTAAAACCTAATGTCGTTTGCCTTG
1 TCGCTGGCCTTGAATCAGCATATTGGCACCTTCGTCATCTTTAAGTCC-AATGTCGTTGGCCTTG
* * *
2552148 AATCAGCACATTGGCATTCTTCTCATCTTCAAGACCAATG
65 AATCAGCACATTGGCA--CCT-TCATCTTTAAGTCCAATG
** * *
2552188 TCGCTGATCGTGAATCAGCACATTG
1 TCGCTGGCCTTGAATCAGCATATTG
2552213 ACATTCTTTA
Statistics
Matches: 195, Mismatches: 28, Indels: 8
0.84 0.12 0.03
Matches are distributed among these distances:
97 22 0.11
98 1 0.01
100 2 0.01
101 103 0.53
102 29 0.15
104 2 0.01
105 36 0.18
ACGTcount: A:0.24, C:0.26, G:0.17, T:0.33
Consensus pattern (101 bp):
TCGCTGGCCTTGAATCAGCATATTGGCACCTTCGTCATCTTTAAGTCCAATGTCGTTGGCCTTGA
ATCAGCACATTGGCACCTTCATCTTTAAGTCCAATG
Found at i:2552218 original size:52 final size:51
Alignment explanation
Indices: 2551915--2552229 Score: 261
Period size: 52 Copynumber: 6.2 Consensus size: 51
2551905 TATTGACATA
* * * * *
2551915 TCATCTTTAAGTCTAATGTCCCTGGCCTTGAATCAGCACATCGGCA--CCT-
1 TCATCTTTAAGACCAATGTCGCT-GCCTTGAATCAGCACATTGGCATTCTTC
* * * **
2551964 TCATCTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCATATTGGC-GCCTTC
1 TCATCTTTAAGACCAATGTCGCT-GCCTTGAATCAGCACATTGGCATTCTTC
* * * * *
2552015 GTCATCTTTAAGTCCAATGTCGTTGGCCTTAAATCAACACATTGGCA--CCT-
1 -TCATCTTTAAGACCAATGTCGCT-GCCTTGAATCAGCACATTGGCATTCTTC
* * *
2552065 TCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA-TCTTC
1 TCATCTTTAAGACCAATGTCGCT-GCCTTGAATCAGCACATTGGCATTCTTC
* *
2552116 GTCATCTTTAAAACCTAATGTCGTTTGCCTTGAATCAGCACATTGGCATTCTTC
1 -TCATCTTTAAGACC-AATGTCG-CTGCCTTGAATCAGCACATTGGCATTCTTC
* * * *
2552170 TCATCTTCAAGACCAATGTCGCTGATCGTGAATCAGCACATTGACATTCTT-
1 TCATCTTTAAGACCAATGTCGCTG-CCTTGAATCAGCACATTGGCATTCTTC
2552221 TACATCTTT
1 T-CATCTTT
2552230 GAAACCCAAT
Statistics
Matches: 225, Mismatches: 28, Indels: 23
0.82 0.10 0.08
Matches are distributed among these distances:
49 81 0.36
50 4 0.02
51 5 0.02
52 90 0.40
53 39 0.17
54 6 0.03
ACGTcount: A:0.24, C:0.26, G:0.16, T:0.34
Consensus pattern (51 bp):
TCATCTTTAAGACCAATGTCGCTGCCTTGAATCAGCACATTGGCATTCTTC
Found at i:2553001 original size:19 final size:19
Alignment explanation
Indices: 2552977--2553037 Score: 80
Period size: 19 Copynumber: 3.5 Consensus size: 19
2552967 ACAGCAACTA
2552977 TATCGATACATAAGTGTTG
1 TATCGATACATAAGTGTTG
2552996 TATCGATAC--AA----TG
1 TATCGATACATAAGTGTTG
2553009 TATCGATACATAAGTGTTG
1 TATCGATACATAAGTGTTG
2553028 TATCGATACA
1 TATCGATACA
2553038 ATGTATCGTT
Statistics
Matches: 36, Mismatches: 0, Indels: 12
0.75 0.00 0.25
Matches are distributed among these distances:
13 11 0.31
15 2 0.06
17 2 0.06
19 21 0.58
ACGTcount: A:0.34, C:0.13, G:0.18, T:0.34
Consensus pattern (19 bp):
TATCGATACATAAGTGTTG
Found at i:2553012 original size:13 final size:13
Alignment explanation
Indices: 2552994--2553051 Score: 53
Period size: 13 Copynumber: 4.0 Consensus size: 13
2552984 ACATAAGTGT
2552994 TGTATCGATACAA
1 TGTATCGATACAA
2553007 TGTATCGATACATAA
1 TGTATCGATAC--AA
2553022 GTGTTGTATCGATACAA
1 ----TGTATCGATACAA
*
2553039 TGTATCGTTACAA
1 TGTATCGATACAA
2553052 AGCTACTGCC
Statistics
Matches: 38, Mismatches: 1, Indels: 12
0.75 0.02 0.24
Matches are distributed among these distances:
13 23 0.61
15 2 0.05
17 2 0.05
19 11 0.29
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.34
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2553018 original size:32 final size:32
Alignment explanation
Indices: 2552977--2553050 Score: 139
Period size: 32 Copynumber: 2.3 Consensus size: 32
2552967 ACAGCAACTA
2552977 TATCGATACATAAGTGTTGTATCGATACAATG
1 TATCGATACATAAGTGTTGTATCGATACAATG
2553009 TATCGATACATAAGTGTTGTATCGATACAATG
1 TATCGATACATAAGTGTTGTATCGATACAATG
*
2553041 TATCGTTACA
1 TATCGATACA
2553051 AAGCTACTGC
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 41 1.00
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.35
Consensus pattern (32 bp):
TATCGATACATAAGTGTTGTATCGATACAATG
Found at i:2556152 original size:21 final size:22
Alignment explanation
Indices: 2556128--2556174 Score: 55
Period size: 21 Copynumber: 2.2 Consensus size: 22
2556118 AAAGTGATCA
*
2556128 AATTAG-AA-AAGAAAATTAATG
1 AATTAGCAAGAAGAAAA-TAAAG
2556149 AATT-GCAAGAAGAAAATAAAG
1 AATTAGCAAGAAGAAAATAAAG
2556170 AATTA
1 AATTA
2556175 ACTAATAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
20 1 0.05
21 14 0.64
22 7 0.32
ACGTcount: A:0.62, C:0.02, G:0.15, T:0.21
Consensus pattern (22 bp):
AATTAGCAAGAAGAAAATAAAG
Found at i:2556185 original size:21 final size:21
Alignment explanation
Indices: 2556161--2556210 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
2556151 TTGCAAGAAG
* *
2556161 AAAATAAAGAATTAACTAATA
1 AAAACAAAGAATTAACTAAGA
* *
2556182 AAAACAATGAATTGACTAAGA
1 AAAACAAAGAATTAACTAAGA
2556203 AAAACAAA
1 AAAACAAA
2556211 ACTTGCATGA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.66, C:0.08, G:0.08, T:0.18
Consensus pattern (21 bp):
AAAACAAAGAATTAACTAAGA
Found at i:2562359 original size:13 final size:13
Alignment explanation
Indices: 2562341--2562371 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
2562331 TACAATCCAT
2562341 AATGTATCGATAC
1 AATGTATCGATAC
2562354 AATGTATCGATAC
1 AATGTATCGATAC
2562367 AATGT
1 AATGT
2562372 CCTATGTATC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.39, C:0.13, G:0.16, T:0.32
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:2562360 original size:33 final size:32
Alignment explanation
Indices: 2562320--2562388 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 32
2562310 CCGTTACAAG
2562320 CAATGTATCGATACAA-TCCATAATGTATCGATA
1 CAATGTATCGATACAAGTCC-T-ATGTATCGATA
2562353 CAATGTATCGATACAATGTCCTATGTATCGATA
1 CAATGTATCGATACAA-GTCCTATGTATCGATA
2562386 CAA
1 CAA
2562389 ACAGTGGTAG
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
33 30 0.88
34 1 0.03
35 3 0.09
ACGTcount: A:0.38, C:0.19, G:0.13, T:0.30
Consensus pattern (32 bp):
CAATGTATCGATACAAGTCCTATGTATCGATA
Found at i:2564297 original size:13 final size:13
Alignment explanation
Indices: 2564279--2564318 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
2564269 ATAGTAACCC
*
2564279 ATGTATCGATATA
1 ATGTATCGATACA
*
2564292 ATGTATTGATACA
1 ATGTATCGATACA
*
2564305 ATATATCGATACA
1 ATGTATCGATACA
2564318 A
1 A
2564319 GGAATGTTAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.42, C:0.10, G:0.12, T:0.35
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2569547 original size:19 final size:20
Alignment explanation
Indices: 2569503--2569575 Score: 87
Period size: 20 Copynumber: 3.7 Consensus size: 20
2569493 CTGCCAGTTT
* *
2569503 CATGTATCGATACAATTATC
1 CATGTATCGATACAATGATA
2569523 CATGTATCGATACAATGA-A
1 CATGTATCGATACAATGATA
*
2569542 CATGTATCGATACAAAGCATA
1 CATGTATCGATACAATG-ATA
*
2569563 -ATATATCGATACA
1 CATGTATCGATACA
2569576 TCTGGGTGTG
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
19 16 0.34
20 30 0.64
21 1 0.02
ACGTcount: A:0.41, C:0.18, G:0.12, T:0.29
Consensus pattern (20 bp):
CATGTATCGATACAATGATA
Found at i:2571112 original size:33 final size:33
Alignment explanation
Indices: 2571057--2571120 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
2571047 ACCTAGATAT
**
2571057 ATCAATACAAATTGTTAAGTATCAATACATTGG
1 ATCAATACAAATTACTAAGTATCAATACATTGG
** *
2571090 ATCAATACAAATTACTCTGTATCGATACATT
1 ATCAATACAAATTACTAAGTATCAATACATT
2571121 ATGAATTATA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.41, C:0.16, G:0.09, T:0.34
Consensus pattern (33 bp):
ATCAATACAAATTACTAAGTATCAATACATTGG
Found at i:2571198 original size:21 final size:21
Alignment explanation
Indices: 2571168--2571219 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 21
2571158 TCTTTGACTA
*
2571168 TATCGATACATTATTAAATTG
1 TATCGATACATTAATAAATTG
* *
2571189 TATTGATACA-TAATGAATTG
1 TATCGATACATTAATAAATTG
2571209 TATCGATACAT
1 TATCGATACAT
2571220 GTGGCCCAAC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
20 17 0.65
21 9 0.35
ACGTcount: A:0.38, C:0.10, G:0.12, T:0.40
Consensus pattern (21 bp):
TATCGATACATTAATAAATTG
Found at i:2579571 original size:58 final size:58
Alignment explanation
Indices: 2579448--2579731 Score: 186
Period size: 58 Copynumber: 4.9 Consensus size: 58
2579438 ACATAATTGG
* * *** * * * * **
2579448 CCCTAAATGATGAAAAATGATTAAAATGACCCAAAAAAATATGAACTTACATAAT-CG
1 CCCTAAATCATGAAAAATGACTAAAATGGTGCTAAAATACATGAAATTACATAATAAT
* * * *
2579505 CCCTTAAATCATGAAGAATTACTAAAATGGTGCTAACATGCATGAAATTACATAAT-A-
1 CCC-TAAATCATGAAAAATGACTAAAATGGTGCTAAAATACATGAAATTACATAATAAT
** * * * *
2579562 CCTTCTAAATTGTGAAAAATGACTATAATGGTTCTAAAATACATGGATTTACATAATAAT
1 CC--CTAAATCATGAAAAATGACTAAAATGGTGCTAAAATACATGAAATTACATAATAAT
* ** *
2579622 CCCTAAATCATAAAAAATGACTAAAATGGTTTTAAAA-AGCAT-AAATTACTTAA-AAGT
1 CCCTAAATCATGAAAAATGACTAAAATGGTGCTAAAATA-CATGAAATTACATAATAA-T
* * * * * *
2579679 CCTTAAAACATGAAAAATGCCTAAAATGAT-CTTAAAATGCATGAGATTACATA
1 CCCTAAATCATGAAAAATGACTAAAATGGTGC-TAAAATACATGAAATTACATA
2579732 TACGTTGAAA
Statistics
Matches: 176, Mismatches: 41, Indels: 19
0.75 0.17 0.08
Matches are distributed among these distances:
56 2 0.01
57 48 0.27
58 122 0.69
59 2 0.01
60 2 0.01
ACGTcount: A:0.47, C:0.14, G:0.11, T:0.28
Consensus pattern (58 bp):
CCCTAAATCATGAAAAATGACTAAAATGGTGCTAAAATACATGAAATTACATAATAAT
Found at i:2579867 original size:105 final size:102
Alignment explanation
Indices: 2579653--2579867 Score: 236
Period size: 105 Copynumber: 2.1 Consensus size: 102
2579643 TAAAATGGTT
* * * *
2579653 TTAAAAAGCATAAATTACTTAAAAGTCCTTAAAACATGAAAAATGCCTAAAATGATCTTAAAATG
1 TTAAAAAGCATAAATTACATAAAAGTCCCTAAAACATGAAAAATGACAAAAATGATCTTAAAATG
* * *
2579718 CATGAGATTACATATACGTTGAAAATAACCAATATGAA
66 CATAAAATTACATATACGTTGAAAATAA-CAAAATGAA
* * * *
2579756 TATAAAAAGCATAAAATTGCATAGAAGTCCCTAAAATATGAAAAATGACAAAAATGATCTTAAGA
1 T-TAAAAAGCAT-AAATTACATAAAAGTCCCTAAAACATGAAAAATGACAAAAATGATCTTAAAA
* *
2579821 TGCATAAAATTATATAATAGGCTTTGAAACATAA-AAAATG-A
64 TGCATAAAATTACAT-ATA--CGTTGAAA-ATAACAAAATGAA
2579862 TTAAAA
1 TTAAAA
2579868 TAGCCCTAAA
Statistics
Matches: 93, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
103 1 0.01
104 10 0.11
105 61 0.66
106 5 0.05
107 5 0.05
108 7 0.08
109 4 0.04
ACGTcount: A:0.52, C:0.11, G:0.11, T:0.27
Consensus pattern (102 bp):
TTAAAAAGCATAAATTACATAAAAGTCCCTAAAACATGAAAAATGACAAAAATGATCTTAAAATG
CATAAAATTACATATACGTTGAAAATAACAAAATGAA
Done.