Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold407
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4418299
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 127125 characters in sequence are not A, C, G, or T
File 21 of 28
Found at i:3092935 original size:32 final size:32
Alignment explanation
Indices: 3092891--3093011 Score: 92
Period size: 32 Copynumber: 4.0 Consensus size: 32
3092881 GTTTTTTTTT
* * *
3092891 AAAAAAAG-TGCCACTAATTTGTGTGGGCTTC
1 AAAAAGAGTTGCCACTAACTCGTGTGGGCTTC
* * *
3092922 GAAAAGAGTTGCCACTGACTCGTGTGGGCTTT
1 AAAAAGAGTTGCCACTAACTCGTGTGGGCTTC
* * * *
3092954 AAAAAGAGTTACCACTAGCT--TATGGGCTTT
1 AAAAAGAGTTGCCACTAACTCGTGTGGGCTTC
* *
3092984 GAAAAGAG-TGCCCCTAACT--TGTGGGCTT
1 AAAAAGAGTTGCCACTAACTCGTGTGGGCTT
3093012 TGAAAGGGTG
Statistics
Matches: 73, Mismatches: 16, Indels: 4
0.78 0.17 0.04
Matches are distributed among these distances:
29 16 0.22
30 16 0.22
31 6 0.08
32 35 0.48
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (32 bp):
AAAAAGAGTTGCCACTAACTCGTGTGGGCTTC
Found at i:3093013 original size:29 final size:30
Alignment explanation
Indices: 3092912--3093016 Score: 122
Period size: 32 Copynumber: 3.5 Consensus size: 30
3092902 CACTAATTTG
* *
3092912 TGTGGGCTTCGAAAAGAGTTGCCACTGACT
1 TGTGGGCTTTGAAAAGAGTTGCCACTAACT
* * *
3092942 CGTGTGGGCTTTAAAAAGAGTTACCACTAGCT
1 --TGTGGGCTTTGAAAAGAGTTGCCACTAACT
* *
3092974 TATGGGCTTTGAAAAGAG-TGCCCCTAACT
1 TGTGGGCTTTGAAAAGAGTTGCCACTAACT
3093003 TGTGGGCTTTGAAA
1 TGTGGGCTTTGAAA
3093017 GGGTGCCACT
Statistics
Matches: 62, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
29 21 0.34
30 16 0.26
32 25 0.40
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.29
Consensus pattern (30 bp):
TGTGGGCTTTGAAAAGAGTTGCCACTAACT
Found at i:3093435 original size:145 final size:143
Alignment explanation
Indices: 3093032--3094011 Score: 1039
Period size: 145 Copynumber: 6.8 Consensus size: 143
3093022 CCACTGACTG
* * * **
3093032 AAAGGATGCTACTAACTTGTGGGCTTTGAAA-AGAATGCCATTGACTTGTGGTCTTT-AAAAAAG
1 AAAGGATGCCACTAACTTGTGGGCTTTGAAAGAG-ATGCCACTGACTTGTGGGCTTTGAAAGGA-
* * *
3093095 TGCCACTAACTTGTGGACTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTG
64 TGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGAGTGCCACTG
*
3093160 ACTTACGTAAGGCTTTG-
129 ACTT--GT-GGGCTTTGA
* *
3093177 AAAGGATGCCACTAACTTATGGGCTTTGAAA-AGAGTGCCACTGACTTGTGGGCTTTGAAAGGGT
1 AAAGGATGCCACTAACTTGTGGGCTTTGAAAGAGA-TGCCACTGACTTGTGGGCTTTGAAAGGAT
* * * *
3093241 ACCACTGACTTGCATGGGCTTTGAAAAGAGTGCCACTAACTTGTGGCCTTTGAAAGGGTGCCACT
65 GCCACTGACTTG--TGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGAGTGCCACT
*
3093306 AACTTGCGTGGGCTTTGA
128 GACTT--GTGGGCTTTGA
* * * *
3093324 AAAGG-TGCCACTGACTGGTGGGCTTTGAAAGAG-TGCCACTGACTCGTGGGCCTTGAAAGGATG
1 AAAGGATGCCACTAACTTGTGGGCTTTGAAAGAGATGCCACTGACTTGTGGGCTTTGAAAGGATG
* ** * *
3093387 CCACTAACTTGTGGGCTTTGAAAAGAGTTGCCACTGACTCATGTGCCTTGAAAG-GATGCCACTG
66 CCACTGACTTGTGGGCTTTGAAAAGAG-TGCCACTGACTTGTGGGCTTTGAAAGAG-TGCCACTG
* *
3093451 ACTTATGGGCTTTCA
129 ACTTGTGGGCTTTGA
* *
3093466 AAAGAGTTGCCA-TCGACTTGTGGGCTTTGAAA-AGATGCCACTGACTTGTGGGCTTTGAAAAGA
1 AAAG-GATGCCACT-AACTTGTGGGCTTTGAAAGAGATGCCACTGACTTGTGGGCTTTG-AAAG-
* * *
3093529 GTTGCCACCGACTCGTGTGGGCTTTGAAAAGA-TGCCACTGACTTGTGGGCTTTGAAAATAGTGC
62 GATGCCACTGACT--TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTG-AAAGAGTGC
*
3093593 CACTGACTTGTGGTCTTT-A
124 CACTGACTTGTGGGCTTTGA
* * *
3093612 AAAGGGTGCCACTAACTCGTGGGCTTTGAAA-AGATGCCACTGACTTGTGGGCTTTGAAAAGAAT
1 AAAGGATGCCACTAACTTGTGGGCTTTGAAAGAGATGCCACTGACTTGTGGGCTTTG-AAAGGA-
*
3093676 TGCCA-TCGACTCGTGTGGGCTTTGAAAAGA-TGCCACTAACTTGTGGGCTTTGAAAAGAGTGCC
64 TGCCACT-GACT--TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTG-AAAGAGTGCC
* *
3093739 ACTAACTTGTGGGTTTTG-
125 ACTGACTTGTGGGCTTTGA
* * * * *
3093757 AAAGGGTGCCACTAACTTGTGGGTTTTGAAAG-GATGCCACTAACTTATGGGCTTTGAAAGGGTG
1 AAAGGATGCCACTAACTTGTGGGCTTTGAAAGAGATGCCACTGACTTGTGGGCTTTGAAAGGATG
* * * *
3093821 CCA-TGACTTGTGGGCTTTG-AAAGGGTGCCACTGACTCGTGCGGGCTTTGAAAAAATGCCACTG
66 CCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACT--TGTGGGCTTTGAAAGAGTGCCACTG
*
3093884 ACTTATGGGCTTTG-
129 ACTTGTGGGCTTTGA
* * * *
3093898 AAAGGATGCCACTGACTTATGGGCTTTGAAAG-GATGCCACTGACTTATGGGCTTTGAAAAGAGT
1 AAAGGATGCCACTAACTTGTGGGCTTTGAAAGAGATGCCACTGACTTGTGGGCTTTGAAAGGA-T
* * * * *
3093962 GCCACTGACTTATGGGCTTTG-AAAGGGTGCCACTGATTTATGGGTTTTGA
65 GCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGA
3094012 TGAGATGAAC
Statistics
Matches: 725, Mismatches: 82, Indels: 60
0.84 0.09 0.07
Matches are distributed among these distances:
139 4 0.01
140 21 0.03
141 87 0.12
142 32 0.04
143 58 0.08
144 78 0.11
145 277 0.38
146 66 0.09
147 84 0.12
148 18 0.02
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.28
Consensus pattern (143 bp):
AAAGGATGCCACTAACTTGTGGGCTTTGAAAGAGATGCCACTGACTTGTGGGCTTTGAAAGGATG
CCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGAGTGCCACTGAC
TTGTGGGCTTTGA
Found at i:3094002 original size:28 final size:28
Alignment explanation
Indices: 3093030--3094011 Score: 953
Period size: 28 Copynumber: 34.1 Consensus size: 28
3093020 TGCCACTGAC
* * *
3093030 TGAAAGGATGCTACTAACTTGTGGGCTT
1 TGAAAGGGTGCCACTGACTTGTGGGCTT
** * *
3093058 TGAAAAGAATGCCATTGACTTGTGGTCTT
1 TG-AAAGGGTGCCACTGACTTGTGGGCTT
* ** * *
3093087 TAAAAAAGTGCCACTAACTTGTGGACTT
1 TGAAAGGGTGCCACTGACTTGTGGGCTT
*
3093115 TGAAAAGAGTGCCACTGACTTGTGGGCTT
1 TG-AAAGGGTGCCACTGACTTGTGGGCTT
*
3093144 TGAAAGGGTGCCACTGACTTACGTAAGGCTT
1 TGAAAGGGTGCCACTGACTT--GT-GGGCTT
* * *
3093175 TGAAAGGATGCCACTAACTTATGGGCTT
1 TGAAAGGGTGCCACTGACTTGTGGGCTT
*
3093203 TGAAAAGAGTGCCACTGACTTGTGGGCTT
1 TG-AAAGGGTGCCACTGACTTGTGGGCTT
*
3093232 TGAAAGGGTACCACTGACTTGCATGGGCTT
1 TGAAAGGGTGCCACTGACTTG--TGGGCTT
* * *
3093262 TGAAAAGAGTGCCACTAACTTGTGGCCTT
1 TG-AAAGGGTGCCACTGACTTGTGGGCTT
*
3093291 TGAAAGGGTGCCACTAACTTGCGTGGGCTT
1 TGAAAGGGTGCCACTGACTT--GTGGGCTT
* *
3093321 TGAAAAGGTGCCACTGACTGGTGGGCTT
1 TGAAAGGGTGCCACTGACTTGTGGGCTT
* * *
3093349 TGAAAGAGTGCCACTGACTCGTGGGCCT
1 TGAAAGGGTGCCACTGACTTGTGGGCTT
* *
3093377 TGAAAGGATGCCACTAACTTGTGGGCTT
1 TGAAAGGGTGCCACTGACTTGTGGGCTT
* ** * *
3093405 TGAAAAGAGTTGCCACTGACTCATGTGCCT
1 TG-AAAG-GGTGCCACTGACTTGTGGGCTT
* *
3093435 TGAAAGGATGCCACTGACTTATGGGCTT
1 TGAAAGGGTGCCACTGACTTGTGGGCTT
* *
3093463 TCAAAAGAGTTGCCA-TCGACTTGTGGGCTT
1 T-GAAAG-GGTGCCACT-GACTTGTGGGCTT
* *
3093493 TGAAAAGATGCCACTGACTTGTGGGCTT
1 TGAAAGGGTGCCACTGACTTGTGGGCTT
* *
3093521 TGAAAAGAGTTGCCACCGACTCGTGTGGGCTT
1 TG-AAAG-GGTGCCACTGACT--TGTGGGCTT
* *
3093553 TGAAAAGATGCCACTGACTTGTGGGCTT
1 TGAAAGGGTGCCACTGACTTGTGGGCTT
** *
3093581 TGAAAATAGTGCCACTGACTTGTGGTCTT
1 TG-AAAGGGTGCCACTGACTTGTGGGCTT
* * *
3093610 TAAAAGGGTGCCACTAACTCGTGGGCTT
1 TGAAAGGGTGCCACTGACTTGTGGGCTT
* *
3093638 TGAAAAGATGCCACTGACTTGTGGGCTT
1 TGAAAGGGTGCCACTGACTTGTGGGCTT
**
3093666 TGAAAAGAATTGCCA-TCGACTCGTGTGGGCTT
1 TG-AAAG-GGTGCCACT-GACT--TGTGGGCTT
* * *
3093698 TGAAAAGATGCCACTAACTTGTGGGCTT
1 TGAAAGGGTGCCACTGACTTGTGGGCTT
* * *
3093726 TGAAAAGAGTGCCACTAACTTGTGGGTTT
1 TG-AAAGGGTGCCACTGACTTGTGGGCTT
* *
3093755 TGAAAGGGTGCCACTAACTTGTGGGTTT
1 TGAAAGGGTGCCACTGACTTGTGGGCTT
* * *
3093783 TGAAAGGATGCCACTAACTTATGGGCTT
1 TGAAAGGGTGCCACTGACTTGTGGGCTT
3093811 TGAAAGGGTGCCA-TGACTTGTGGGCTT
1 TGAAAGGGTGCCACTGACTTGTGGGCTT
*
3093838 TGAAAGGGTGCCACTGACTCGTGCGGGCTT
1 TGAAAGGGTGCCACTGACT--TGTGGGCTT
*** *
3093868 TGAAAAAATGCCACTGACTTATGGGCTT
1 TGAAAGGGTGCCACTGACTTGTGGGCTT
* *
3093896 TGAAAGGATGCCACTGACTTATGGGCTT
1 TGAAAGGGTGCCACTGACTTGTGGGCTT
* *
3093924 TGAAAGGATGCCACTGACTTATGGGCTT
1 TGAAAGGGTGCCACTGACTTGTGGGCTT
* *
3093952 TGAAAAGAGTGCCACTGACTTATGGGCTT
1 TG-AAAGGGTGCCACTGACTTGTGGGCTT
* * *
3093981 TGAAAGGGTGCCACTGATTTATGGGTTT
1 TGAAAGGGTGCCACTGACTTGTGGGCTT
3094009 TGA
1 TGA
3094012 TGAGATGAAC
Statistics
Matches: 808, Mismatches: 113, Indels: 66
0.82 0.11 0.07
Matches are distributed among these distances:
27 25 0.03
28 403 0.50
29 177 0.22
30 135 0.17
31 46 0.06
32 22 0.03
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.28
Consensus pattern (28 bp):
TGAAAGGGTGCCACTGACTTGTGGGCTT
Found at i:3094003 original size:57 final size:57
Alignment explanation
Indices: 3093046--3094011 Score: 1006
Period size: 57 Copynumber: 16.8 Consensus size: 57
3093036 GATGCTACTA
** * * * *
3093046 ACTTGTGGGCTTTGAAAAGAATGCCATTGACTTGTGGTCTTT-AAAAAAGTGCCACTA
1 ACTTGTGGGCTTTG-AAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTG
* * *
3093103 ACTTGTGGACTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTG-AAAGGGTGCCACTG
1 ACTTGTGGGCTTTG-AAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTG
* * * *
3093160 ACTTACGTAAGGCTTTGAAAGGATGCCACTAACTTATGGGCTTTGAAAAGAGTGCCACTG
1 ACTT--GT-GGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTG
* *
3093220 ACTTGTGGGCTTTGAAAGGGTACCACTGACTTGCATGGGCTTTGAAAAGAGTGCCACTA
1 ACTTGTGGGCTTTGAAAGGGTGCCACTGACTTG--TGGGCTTTGAAAAGAGTGCCACTG
* *
3093279 ACTTGTGGCCTTTGAAAGGGTGCCACTAACTTGCGTGGGCTTTGAAAAG-GTGCCACTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTGACTT--GTGGGCTTTGAAAAGAGTGCCACTG
* * * * * *
3093337 ACTGGTGGGCTTTGAAAGAGTGCCACTGACTCGTGGGCCTTGAAAGGA-TGCCACTA
1 ACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTG
* ** * * *
3093393 ACTTGTGGGCTTTGAAAAGAGTTGCCACTGACTCATGTGCCTTGAAAGGA-TGCCACTG
1 ACTTGTGGGCTTTG-AAAG-GGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTG
* * *
3093451 ACTTATGGGCTTTCAAAAGAGTTGCCA-TCGACTTGTGGGCTTTGAAAAGA-TGCCACTG
1 ACTTGTGGGCTTT-GAAAG-GGTGCCACT-GACTTGTGGGCTTTGAAAAGAGTGCCACTG
* *
3093509 ACTTGTGGGCTTTGAAAAGAGTTGCCACCGACTCGTGTGGGCTTTGAAAAGA-TGCCACTG
1 ACTTGTGGGCTTTG-AAAG-GGTGCCACTGACT--TGTGGGCTTTGAAAAGAGTGCCACTG
** * * *
3093569 ACTTGTGGGCTTTGAAAATAGTGCCACTGACTTGTGGTCTTT-AAAAGGGTGCCACTA
1 ACTTGTGGGCTTTG-AAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTG
* * * *
3093626 ACTCGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAAGAATTGCCA-TCG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAG-AGTGCCACT-G
* * * *
3093684 ACTCGTGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAAAGAGTGCCACTA
1 ACT--TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTG
* * * * *
3093743 ACTTGTGGGTTTTGAAAGGGTGCCACTAACTTGTGGGTTTTGAAAGGA-TGCCACTA
1 ACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTG
* *
3093799 ACTTATGGGCTTTGAAAGGGTGCCA-TGACTTGTGGGCTTTG-AAAGGGTGCCACTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTG
* *** * *
3093854 ACTCGTGCGGGCTTTGAAAAAATGCCACTGACTTATGGGCTTTGAAAGGA-TGCCACTG
1 ACT--TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTG
* * *
3093912 ACTTATGGGCTTTGAAAGGATGCCACTGACTTATGGGCTTTGAAAAGAGTGCCACTG
1 ACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTG
* * * *
3093969 ACTTATGGGCTTTGAAAGGGTGCCACTGATTTATGGGTTTTGA
1 ACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGA
3094012 TGAGATGAAC
Statistics
Matches: 783, Mismatches: 95, Indels: 62
0.83 0.10 0.07
Matches are distributed among these distances:
54 3 0.00
55 24 0.03
56 132 0.17
57 220 0.28
58 180 0.23
59 114 0.15
60 109 0.14
61 1 0.00
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.28
Consensus pattern (57 bp):
ACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTG
Found at i:3095255 original size:1 final size:1
Alignment explanation
Indices: 3095251--3095309 Score: 64
Period size: 1 Copynumber: 59.0 Consensus size: 1
3095241 TTTTTCTTGG
* * * * * *
3095251 TTTTTTTTTGTTTTTTTATTTTTTTATTTTTTTATTTTTTTATTTTTTTGTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
3095310 GGGTATGAAG
Statistics
Matches: 46, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
1 46 1.00
ACGTcount: A:0.07, C:0.00, G:0.03, T:0.90
Consensus pattern (1 bp):
T
Found at i:3095264 original size:8 final size:8
Alignment explanation
Indices: 3095253--3095307 Score: 92
Period size: 8 Copynumber: 6.9 Consensus size: 8
3095243 TTTCTTGGTT
*
3095253 TTTTTTTG
1 TTTTTTTA
3095261 TTTTTTTA
1 TTTTTTTA
3095269 TTTTTTTA
1 TTTTTTTA
3095277 TTTTTTTA
1 TTTTTTTA
3095285 TTTTTTTA
1 TTTTTTTA
*
3095293 TTTTTTTG
1 TTTTTTTA
3095301 TTTTTTT
1 TTTTTTT
3095308 TTGGGTATGA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 45 1.00
ACGTcount: A:0.07, C:0.00, G:0.04, T:0.89
Consensus pattern (8 bp):
TTTTTTTA
Found at i:3102887 original size:20 final size:21
Alignment explanation
Indices: 3102844--3102898 Score: 76
Period size: 20 Copynumber: 2.6 Consensus size: 21
3102834 GTCAAGGAAA
3102844 TGTATCGATACATACTTATAAT
1 TGTATCGATACATA-TTATAAT
*
3102866 TGTATCGATACAT-TTATCAT
1 TGTATCGATACATATTATAAT
*
3102886 TGCATCGATACAT
1 TGTATCGATACAT
3102899 CTGGGTTTTG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 18 0.58
22 13 0.42
ACGTcount: A:0.33, C:0.16, G:0.11, T:0.40
Consensus pattern (21 bp):
TGTATCGATACATATTATAAT
Found at i:3105430 original size:79 final size:78
Alignment explanation
Indices: 3105297--3105661 Score: 355
Period size: 79 Copynumber: 4.6 Consensus size: 78
3105287 TCATTGATGT
* * * *** *
3105297 TTTTATTTCTAAAACATTAATTTTCCACCATCGGGGATACTCCAACCTTATTATTTTTAAG-GGA
1 TTTTATTTCCAAAACA-TAATTTTCCACCATCGGAGATACTCTAACCCCGTTATTTTCAAGAGG-
3105361 ATACTCCAACCCC-A
64 ATACTCCAACCCCGA
* * * * *
3105375 GTTTTATTTTCAAAACACTAATTTTTCACTATCGGAGATACTCTAACCCCGTTATTTTCGAGGGG
1 -TTTTATTTCCAAAACA-TAATTTTCCACCATCGGAGATACTCTAACCCCGTTATTTTCAAGAGG
* *
3105440 ATACTCTAACCCTGA
64 ATACTCCAACCCCGA
*
3105455 TTTTATTTCCAAAACATCGATTTTCCACCATCAGG-GATACT-TCAACCCCGTTATTTTCAAGAG
1 TTTTATTTCCAAAACAT-AATTTTCCACCATC-GGAGATACTCT-AACCCCGTTATTTTCAAGAG
3105518 GATACTCCAACCCCGA
63 GATACTCCAACCCCGA
* * **
3105534 TTTTATTTCCAAAACATCAATATTCCACCATC-AAGGATACTCTAACCCCGTTATTTTTGAGAGG
1 TTTTATTTCCAAAACAT-AATTTTCCACCATCGGA-GATACTCTAACCCCGTTATTTTCAAGAGG
* *
3105598 ATACTCTAACCTCGA
64 ATACTCCAACCCCGA
* * * * *
3105613 TTTTGTTTCCAAAATATTGACTTTT-CACCATCGGGGATACTCCAACCCC
1 TTTTATTTCCAAAACA-T-AATTTTCCACCATCGGAGATACTCTAACCCC
3105662 ATTTTTATTT
Statistics
Matches: 239, Mismatches: 37, Indels: 20
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.01
79 226 0.95
80 11 0.05
ACGTcount: A:0.29, C:0.26, G:0.11, T:0.34
Consensus pattern (78 bp):
TTTTATTTCCAAAACATAATTTTCCACCATCGGAGATACTCTAACCCCGTTATTTTCAAGAGGAT
ACTCCAACCCCGA
Found at i:3105585 original size:158 final size:158
Alignment explanation
Indices: 3105297--3105664 Score: 478
Period size: 158 Copynumber: 2.3 Consensus size: 158
3105287 TCATTGATGT
* * ** *
3105297 TTTTATTTCTAAAACATTAATTTTCCACCATCGGGGATACTCCAACCTTATTATTTTTAAGGGAA
1 TTTTATTTCCAAAACATTGATTTTCCACCATCGGGGATACTCCAACCCCATTATTTTCAAGGGAA
* * * * *
3105362 TACTCCAACCCCAGTTTTATTTTCAAAACACTAATTTTTCACTATCGGAGATACTCTAACCCCGT
66 TACTCCAACCCCAGTTTTATTTCCAAAACACTAATATTCCACCATCAGAGATACTCTAACCCCGT
*
3105427 TATTTTCGAGGGGATACTCTAACC-CTGA
131 TATTTTCGAGAGGATACTCTAACCTC-GA
* * * *
3105455 TTTTATTTCCAAAACATCGATTTTCCACCATCAGGGATACTTCAACCCCGTTATTTTCAAGAGG-
1 TTTTATTTCCAAAACATTGATTTTCCACCATCGGGGATACTCCAACCCCATTATTTTCAAG-GGA
3105519 ATACTCCAACCCC-GATTTTATTTCCAAAACA-TCAATATTCCACCATCA-AGGATACTCTAACC
65 ATACTCCAACCCCAG-TTTTATTTCCAAAACACT-AATATTCCACCATCAGA-GATACTCTAACC
*
3105581 CCGTTATTTTTGAGAGGATACTCTAACCTCGA
127 CCGTTATTTTCGAGAGGATACTCTAACCTCGA
* *
3105613 TTTTGTTTCCAAAATATTGACTTTT-CACCATCGGGGATACTCCAACCCCATT
1 TTTTATTTCCAAAACATTGA-TTTTCCACCATCGGGGATACTCCAACCCCATT
3105665 TTTATTTCCA
Statistics
Matches: 182, Mismatches: 22, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
157 3 0.02
158 172 0.95
159 7 0.04
ACGTcount: A:0.29, C:0.26, G:0.11, T:0.34
Consensus pattern (158 bp):
TTTTATTTCCAAAACATTGATTTTCCACCATCGGGGATACTCCAACCCCATTATTTTCAAGGGAA
TACTCCAACCCCAGTTTTATTTCCAAAACACTAATATTCCACCATCAGAGATACTCTAACCCCGT
TATTTTCGAGAGGATACTCTAACCTCGA
Found at i:3105673 original size:51 final size:51
Alignment explanation
Indices: 3105596--3105709 Score: 169
Period size: 51 Copynumber: 2.2 Consensus size: 51
3105586 ATTTTTGAGA
* * *
3105596 GGATACTCTAACCTCGATTTTGTTTCCAAAATATTGACTTT-TCACCATCGG
1 GGATACTCCAACCTCCATTTTATTTCCAAAATATTGA-TTTCTCACCATCGG
3105647 GGATACTCCAACC-CCATTTTTATTTCCAAAATATTGATTTCTCACCATCGG
1 GGATACTCCAACCTCCA-TTTTATTTCCAAAATATTGATTTCTCACCATCGG
3105698 GGATACTCCAAC
1 GGATACTCCAAC
3105710 TCCGTTGTTT
Statistics
Matches: 58, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
50 5 0.09
51 53 0.91
ACGTcount: A:0.27, C:0.26, G:0.12, T:0.34
Consensus pattern (51 bp):
GGATACTCCAACCTCCATTTTATTTCCAAAATATTGATTTCTCACCATCGG
Found at i:3108090 original size:15 final size:15
Alignment explanation
Indices: 3108070--3108099 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
3108060 ATGATTAGCA
3108070 GGATCTGGAGACCAT
1 GGATCTGGAGACCAT
3108085 GGATCTGGAGACCAT
1 GGATCTGGAGACCAT
3108100 ATGGGCCAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.20, G:0.33, T:0.20
Consensus pattern (15 bp):
GGATCTGGAGACCAT
Found at i:3116153 original size:20 final size:20
Alignment explanation
Indices: 3116130--3116204 Score: 87
Period size: 20 Copynumber: 3.8 Consensus size: 20
3116120 AAGTACCTAG
*
3116130 ATGTATCGATACATTTTTTA
1 ATGTATCGATACATTTTTCA
* * * * *
3116150 ATGTATCAATAAATGTATGA
1 ATGTATCGATACATTTTTCA
*
3116170 ATGTATCGATACATTCTTCA
1 ATGTATCGATACATTTTTCA
3116190 ATGTATCGATACATT
1 ATGTATCGATACATT
3116205 CTGTCTTTTT
Statistics
Matches: 44, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.41
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:3127135 original size:12 final size:11
Alignment explanation
Indices: 3127102--3127147 Score: 58
Period size: 11 Copynumber: 4.3 Consensus size: 11
3127092 TTTCATACCC
3127102 AAAAAACAAAA
1 AAAAAACAAAA
*
3127113 AAAAAA-GAAA
1 AAAAAACAAAA
*
3127123 AAAAACCAAAA
1 AAAAAACAAAA
*
3127134 AAGAAACAAAA
1 AAAAAACAAAA
3127145 AAA
1 AAA
3127148 CAAAAAACCA
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
10 8 0.29
11 20 0.71
ACGTcount: A:0.87, C:0.09, G:0.04, T:0.00
Consensus pattern (11 bp):
AAAAAACAAAA
Found at i:3127163 original size:29 final size:27
Alignment explanation
Indices: 3127100--3127182 Score: 89
Period size: 29 Copynumber: 3.0 Consensus size: 27
3127090 TCTTTCATAC
*
3127100 CCAAAAAACAAAA-AAAAAAGAAAAAAAA
1 CCAAAAAA-AAAACAAAAAA-ACAAAAAA
*
3127128 CCAAAAAAGAAACAAAAAAACAAAAAA
1 CCAAAAAAAAAACAAAAAAACAAAAAA
3127155 CCATGAAAAAAATAAC-AAAAAACAAAAA
1 CCA--AAAAAAA-AACAAAAAAACAAAAA
3127183 GGGGTCAAGA
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
27 13 0.27
28 14 0.29
29 18 0.38
30 3 0.06
ACGTcount: A:0.81, C:0.13, G:0.04, T:0.02
Consensus pattern (27 bp):
CCAAAAAAAAAACAAAAAAACAAAAAA
Found at i:3127166 original size:22 final size:20
Alignment explanation
Indices: 3127102--3127182 Score: 78
Period size: 20 Copynumber: 4.0 Consensus size: 20
3127092 TTTCATACCC
*
3127102 AAAAAACAAAAAA-AAAAGAA
1 AAAAAACAAAAAACAGAA-AA
*
3127122 AAAAAACCAAAAA-AGAAACA
1 AAAAAACAAAAAACAGAAA-A
3127142 AAAAAACAAAAAACCATGAAAA
1 AAAAAACAAAAAA-CA-GAAAA
*
3127164 AAATAACAAAAAACA-AAAA
1 AAAAAACAAAAAACAGAAAA
3127183 GGGGTCAAGA
Statistics
Matches: 53, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
19 5 0.09
20 28 0.53
21 2 0.04
22 14 0.26
23 4 0.08
ACGTcount: A:0.83, C:0.11, G:0.04, T:0.02
Consensus pattern (20 bp):
AAAAAACAAAAAACAGAAAA
Found at i:3127175 original size:11 final size:10
Alignment explanation
Indices: 3127102--3127147 Score: 58
Period size: 10 Copynumber: 4.4 Consensus size: 10
3127092 TTTCATACCC
3127102 AAAAAACAAA
1 AAAAAACAAA
3127112 AAAAAA-AGAA
1 AAAAAACA-AA
3127122 AAAAAACCAAA
1 AAAAAA-CAAA
3127133 AAAGAAACAAA
1 AAA-AAACAAA
3127144 AAAA
1 AAAA
3127148 CAAAAAACCA
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
9 1 0.03
10 15 0.47
11 12 0.38
12 4 0.12
ACGTcount: A:0.87, C:0.09, G:0.04, T:0.00
Consensus pattern (10 bp):
AAAAAACAAA
Found at i:3128418 original size:28 final size:28
Alignment explanation
Indices: 3128374--3128746 Score: 476
Period size: 28 Copynumber: 13.1 Consensus size: 28
3128364 CATTCATCAC
3128374 TTCAAAGCCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
** *
3128402 TTCAAAGCCCATGAGTCAGTGGCACTCTT
1 TTCAAAGCCCACAAGTCAGTGGCAC-CCT
*
3128431 TTCAAAGCCCATAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
3128459 TTCAAAGCCCACAAGTTAGTAGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
3128487 TTTAAAGCCCACAAGTCAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
*
3128515 TTCAAAGCCCATAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
*
3128543 TTCAAAGCCCATAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
** * * * *
3128571 TTCAAAGCTGAAAAGTTAATGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
3128599 TTCAAAGCCCACGCAAGTCAGTGGCACCCT
1 TTCAAAGCCCA--CAAGTCAGTGGCACCCT
* *
3128629 TTCAAAGCCCACGTAAGTCAATGGCATCCT
1 TTCAAAGCCCAC--AAGTCAGTGGCACCCT
* *
3128659 TTCAAAGCCCATAAGTCAGTGGCACCTT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
*
3128687 TTCAAAACCCACACAAGTCAGTGGCACCCT
1 TTC-AAAGCC-CACAAGTCAGTGGCACCCT
* *
3128717 TTCAAAGCCCACAAGTCATTGGCACTCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
3128745 TT
1 TT
3128747 TTAAAATCTT
Statistics
Matches: 299, Mismatches: 39, Indels: 14
0.85 0.11 0.04
Matches are distributed among these distances:
28 194 0.65
29 36 0.12
30 69 0.23
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.23
Consensus pattern (28 bp):
TTCAAAGCCCACAAGTCAGTGGCACCCT
Found at i:3132418 original size:185 final size:181
Alignment explanation
Indices: 3132176--3132788 Score: 568
Period size: 185 Copynumber: 3.3 Consensus size: 181
3132166 AACCTTTTAT
* *
3132176 CCTTTTAGTCCTCAAAAAGCAAGACACCTTTTCCTTTTAAAGCCCACACAGGTTGGTGGCACTTA
1 CCTTTTAGTCCTCAAAAAGCAAGA-GCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTA
* * **
3132241 CCTGTCCCCAAAAAGTGGACACCTTCTCTTTTCAAAGTCCACACAAGTTGGTAACACCTCTTAGT
65 TCTGTCCTCAAAAAGTGGACACCTTCTCTTTT-AAAGTCCACACAAGTTGGTGGCACCT-TTAGT
*
3132306 CTTCAAAGAGTAGGGCACTTTCCTTTTTTCTTTTAAAGCCCACACAAGTTTGTGGCA
128 CTTCAAAGAGTA-GGCACTTTCC--TTTTCTTTTAAAGCCCACACAAGTTGGTGGCA
* * * *
3132363 CCTTCTAGTCCTCAAAAAGTAAGA-CAC-TTTCCTTTTAAAGCCTACACAAGTTGGTGGCAC-CA
1 CCTTTTAGTCCTCAAAAAGCAAGAGC-CTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTA
* ** * * *
3132425 TTTAGTCCTCAAAAAGTAGGATGCCTTTTCTTTTTAAAGCCCACACAGGTTGGTGGCACCTTTTA
65 TCT-GTCCTCAAAAAGT-GGACACCTTCTC-TTTTAAAGTCCACACAAGTTGGTGGCACC-TTTA
* * * * * *
3132490 GT-TCTCAAAAAGTAGGAAC--ACCTTCTCCTTTCAAAGTCCACACAAGTTGGTGGCA
126 GTCT-TCAAAGAGTAGGCACTTTCCTT-TTCTTTTAAAGCCCACACAAGTTGGTGGCA
* * * * * *
3132545 CTTTTTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTCAAAGCGCACACAAGTTAGTGGCAGCT
1 C-CTTTTAGTCCTCAAAAAGCAAGA-GCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA-CT
* * * * *
3132610 T-TCAGTCCTTAAAGAGTTGGACATCTTTCCCTTTTAAAGTCCACACAAGTTGGTGGCACCTTTC
63 TATCTGTCCTCAAAAAG-TGGACA-CCTTCTCTTTTAAAGTCCACACAAGTTGGTGGCACCTTT-
* * * *
3132674 AGCCCTCAAAGAGCACGACACTTT-C---T-TTTTAAAGCCCACACAAGTTGGTGGCA
125 AGTCTTCAAAGAGTA-GGCACTTTCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCA
* * *
3132727 TCTTTTAGTCCTCAAAGAGCAGGATGCCTTTT-CTTTTCAAAGCCCACACAAGTTGGTGGCAC
1 CCTTTTAGTCCTCAAAAAGCAAGA-GCCTTTTCCTTTT-AAAGCCCACACAAGTTGGTGGCAC
3132789 CTTTTAGTCC
Statistics
Matches: 347, Mismatches: 58, Indels: 49
0.76 0.13 0.11
Matches are distributed among these distances:
180 5 0.01
181 53 0.15
182 52 0.15
183 20 0.06
184 6 0.02
185 128 0.37
186 55 0.16
187 28 0.08
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (181 bp):
CCTTTTAGTCCTCAAAAAGCAAGAGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTAT
CTGTCCTCAAAAAGTGGACACCTTCTCTTTTAAAGTCCACACAAGTTGGTGGCACCTTTAGTCTT
CAAAGAGTAGGCACTTTCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCA
Found at i:3132481 original size:61 final size:61
Alignment explanation
Indices: 3132176--3132870 Score: 605
Period size: 61 Copynumber: 11.3 Consensus size: 61
3132166 AACCTTTTAT
* * * * * *
3132176 CCTTTTAGTCCTCAAAAAGCAAGACACCTTTTCCTTTTAAAGCCCACACAGGTTGGTGGCA
1 CCTTTTAGTCCTCAAAGAGTAGGATACCTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCA
* * * * * * * **
3132237 -CTTACCT-GTCCCCAAAAAGT-GGACACCTTCTCTTTTCAAAGTCCACACAAGTTGGTAACA
1 CCTT--TTAGTCCTCAAAGAGTAGGATACCTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCA
* * * * *
3132297 CCTCTTAGTCTTCAAAGAGTAGGGCACTTTCCTTTTTTCTTTTAAAGCCCACACAAGTTTGTGGC
1 CCTTTTAGTCCTCAAAGAGTA-GG-A--TACCTTTTCT-TTTTAAAGCCCACACAAGTTGGTGGC
3132362 A
61 A
* * * * * *
3132363 CCTTCTAGTCCTCAAAAAGTAAGACA-C-TTTCCTTTTAAAGCCTACACAAGTTGGTGGCA
1 CCTTTTAGTCCTCAAAGAGTAGGATACCTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCA
* * * *
3132422 CCATTTAGTCCTCAAAAAGTAGGATGCCTTTTCTTTTTAAAGCCCACACAGGTTGGTGGCA
1 CCTTTTAGTCCTCAAAGAGTAGGATACCTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCA
* * * * * * *
3132483 CCTTTTAGTTCTCAAAAAGTAGGAACACCTTCTCCTTTCAAAGTCCACACAAGTTGGTGGCA
1 CCTTTTAGTCCTCAAAGAGTAGG-ATACCTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCA
* * * * * * *
3132545 CTTTTTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTCAAAGCGCACACAAGTTAGTGGCA
1 C-CTTTTAGTCCTCAAAGAGTAGGATACCTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCA
* * * * * * * * *
3132607 GCTTTCAGTCCTTAAAGAGTTGGACATCTTTCCCTTTTAAAGTCCACACAAGTTGGTGGCA
1 CCTTTTAGTCCTCAAAGAGTAGGATACCTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCA
* * * * *
3132668 CCTTTCAGCCCTCAAAGAGCACGACA-C-TTTCTTTTTAAAGCCCACACAAGTTGGTGGCA
1 CCTTTTAGTCCTCAAAGAGTAGGATACCTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCA
* * * *
3132727 TCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCA
1 CCTTTTAGTCCTCAAAGAGTAGGATACCTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCA
* * * * * *
3132788 CCTTTTAGTCCTCAAAGAGCAAGACACTTCCTTTT-TCTTTTAAAGCCCATACAAGCTGTTGGCA
1 CCTTTTAGTCCTCAAAGAG-TAG-GA-TACCTTTTCT-TTTTAAAGCCCACACAAGTTGGTGGCA
3132852 CCTTTTAGTCCTCAAAGAG
1 CCTTTTAGTCCTCAAAGAG
3132871 CAAGATGTCT
Statistics
Matches: 513, Mismatches: 101, Indels: 37
0.79 0.16 0.06
Matches are distributed among these distances:
59 96 0.19
60 51 0.10
61 180 0.35
62 69 0.13
63 21 0.04
64 50 0.10
65 7 0.01
66 39 0.08
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (61 bp):
CCTTTTAGTCCTCAAAGAGTAGGATACCTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCA
Found at i:3132500 original size:120 final size:119
Alignment explanation
Indices: 3132179--3132867 Score: 649
Period size: 120 Copynumber: 5.6 Consensus size: 119
3132169 CTTTTATCCT
* * ** * * *
3132179 TTTAGTCCTCAAAAAGCAAGACACCTTTTCCTTTTAAAGCCCACACAGGTTGGTGGCA-CTTACC
1 TTTAGTCCTCAAAGAGCAGGATGCCTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTT--T
* * **
3132243 T-GTCCCCAAAAAGT-GGACACCTTCTCTTTTCAAAGTCCACACAAGTTGGTAACACC
64 TAGTCCTCAAAAAGTAGGACACTTTC-CTTTT-AAAGTCCACACAAGTTGGTGGCACC
* * * * *
3132299 TCTTAGTCTTCAAAGAGTAGGGCACTTTCCTTTTTTCTTTTAAAGCCCACACAAGTTTGTGGCAC
1 T-TTAGTCCTCAAAGAGCA-GG-A--TGCCTTTTCT-TTTTAAAGCCCACACAAGTTGGTGGCAC
* *
3132364 CTTCTAGTCCTCAAAAAGTAAGACACTTTCCTTTTAAAG-CCTACACAAGTTGGTGGCACC
60 CTTTTAGTCCTCAAAAAGTAGGACACTTTCCTTTTAAAGTCC-ACACAAGTTGGTGGCACC
* * *
3132424 ATTTAGTCCTCAAAAAGTAGGATGCCTTTTCTTTTTAAAGCCCACACAGGTTGGTGGCACCTTTT
1 -TTTAGTCCTCAAAGAGCAGGATGCCTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTTT
* * *
3132489 AGTTCTCAAAAAGTAGGAACACCTTCTCCTTTCAAAGTCCACACAAGTTGGTGGCACTTT
65 AGTCCTCAAAAAGTAGG-ACA-CTT-TCCTTTTAAAGTCCACACAAGTTGGTGGCAC--C
* * * * * *
3132549 TTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTCAAAGCGCACACAAGTTAGTGGCAGCTTTCA
1 TTTAGTCCTCAAAGAGCAGGATGCCTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTA
* * *
3132614 GTCCTTAAAGAGTTGGACATCTTTCCCTTTTAAAGTCCACACAAGTTGGTGGCACC
66 GTCCTCAAAAAGTAGGACA-CTTT-CCTTTTAAAGTCCACACAAGTTGGTGGCACC
* * *
3132670 TTTCAGCCCTCAAAGAGCACGA--CAC-TTTCTTTTTAAAGCCCACACAAGTTGGTGGCATCTTT
1 TTT-AGTCCTCAAAGAGCAGGATGC-CTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
* * * *
3132732 TAGTCCTCAAAGAGCAGGATGC-CTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACC
64 TAGTCCTCAAAAAGTAGGA--CACTTTCCTTTT-AAAGTCCACACAAGTTGGTGGCACC
* * * * *
3132790 TTTTAGTCCTCAAAGAGCAAGACACTTCCTTTT-TCTTTTAAAGCCCATACAAGCTGTTGGCACC
1 -TTTAGTCCTCAAAGAGC-AG-GA-TGCCTTTTCT-TTTTAAAGCCCACACAAGTTGGTGGCACC
3132854 TTTTAGTCCTCAAA
61 TTTTAGTCCTCAAA
3132868 GAGCAAGATG
Statistics
Matches: 476, Mismatches: 62, Indels: 57
0.80 0.10 0.10
Matches are distributed among these distances:
119 5 0.01
120 135 0.28
121 33 0.07
122 23 0.05
123 64 0.13
124 76 0.16
125 86 0.18
126 43 0.09
127 11 0.02
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (119 bp):
TTTAGTCCTCAAAGAGCAGGATGCCTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTA
GTCCTCAAAAAGTAGGACACTTTCCTTTTAAAGTCCACACAAGTTGGTGGCACC
Found at i:3135749 original size:79 final size:79
Alignment explanation
Indices: 3135609--3136171 Score: 553
Period size: 79 Copynumber: 7.2 Consensus size: 79
3135599 TCATTAATGT
* * * * * *
3135609 TTTTATTTCCAAAACATTAATTTTCCACCATCAGAGATACTCCAACCCCGTTATTTCCGAGGGGA
1 TTTTATTTCCAAAACACTGATTTTCCACCATTAGGGATACTCCAACCCTGTTATTTTCGAGGGGA
*
3135674 TACTTCAACCCCAA
66 TACTCCAACCCCAA
* * * * *
3135688 TTTTGTTTCCAAAACATTGATTTTCCACCATTAAGGATATTCCAACCTTGTTATTTTCGAGGGGA
1 TTTTATTTCCAAAACACTGATTTTCCACCATTAGGGATACTCCAACCCTGTTATTTTCGAGGGGA
* * *
3135753 TACACTAACCCCGA
66 TACTCCAACCCCAA
* * * * *
3135767 TTTTATTTCCAAAACACCGATTTTCCACCA-TCGTGATACTCAAACCCTATTA-TTTCTGAGGGG
1 TTTTATTTCCAAAACACTGATTTTCCACCATTAGGGATACTCCAACCCTGTTATTTTC-GAGGGG
* * *
3135830 ATACTCTAACCTCGA
65 ATACTCCAACCCCAA
* * * * * * ** ** *
3135845 TTTTATTTCTAAAATACTAATTTTTCACCATTGGGGACACTCCAACCCCATTATTTTTAAGAGGA
1 TTTTATTTCCAAAACACTGATTTTCCACCATTAGGGATACTCCAACCCTGTTATTTTCGAGGGGA
* **
3135910 TACTCCAAACCTGA
66 TACTCCAACCCCAA
* * * *
3135924 TTTTATGTT-TAAAACACCGATTTT---CCATTAGGGATACTCCAACCATGTTATTTTCGAGGGA
1 TTTTAT-TTCCAAAACACTGATTTTCCACCATTAGGGATACTCCAACCCTGTTATTTTCGAGGGG
*
3135985 ATACTCCAACCCCGA
65 ATACTCCAACCCCAA
* * * **
3136000 TTTTATTTCCAAAACACTGATTTTTCACCATCAGGGATACTCCAACCCTGTTATTTTTGAAAGGA
1 TTTTATTTCCAAAACACTGATTTTCCACCATTAGGGATACTCCAACCCTGTTATTTTCGAGGGGA
*
3136065 TACTCCAACCCCAG
66 TACTCCAACCCCAA
* * * * * * * *
3136079 TTTTATTTCTAAAAAATTAATTTTTCACTATTAGGGATACTCCAACCCTATTATTTTCAAGGGGA
1 TTTTATTTCCAAAACACTGATTTTCCACCATTAGGGATACTCCAACCCTGTTATTTTCGAGGGGA
3136144 TACTCCAACCCCAA
66 TACTCCAACCCCAA
*
3136158 TTTTGTTTCCAAAA
1 TTTTATTTCCAAAA
3136172 TATCGACTTT
Statistics
Matches: 396, Mismatches: 80, Indels: 16
0.80 0.16 0.03
Matches are distributed among these distances:
75 2 0.01
76 60 0.15
77 4 0.01
78 59 0.15
79 266 0.67
80 5 0.01
ACGTcount: A:0.30, C:0.25, G:0.11, T:0.34
Consensus pattern (79 bp):
TTTTATTTCCAAAACACTGATTTTCCACCATTAGGGATACTCCAACCCTGTTATTTTCGAGGGGA
TACTCCAACCCCAA
Found at i:3136183 original size:158 final size:158
Alignment explanation
Indices: 3135609--3136205 Score: 584
Period size: 155 Copynumber: 3.8 Consensus size: 158
3135599 TCATTAATGT
** * * ** *
3135609 TTTTATTTCCAAAACATTAATTTTCCACCATCAGAGATACTCCAACCCCGTTATTTCCGAGGGGA
1 TTTTATTTCCAAAACACCAATTTTCCACCATTAGGGATACTCCAACCCTATTATTTTCGAGGGGA
* * * * * * *
3135674 TACTTCAACCCCAATTTTGTTTCCAAAACATTGATTTTCCACCATTAAGGATATTCCAACCTTGT
66 TACTCCAACCCCAATTTTATTTCCAAAACACTGATTTTTCACCATTAGGGATACTCCAACCCTGT
* ** * *
3135739 TATTTTCGAGGGGATACACTAACCCCGA
131 TATTTTTGAAAGGATACTCCAACCCCGA
* * * *
3135767 TTTTATTTCCAAAACACCGATTTTCCACCA-TCGTGATACTCAAACCCTATTA-TTTCTGAGGGG
1 TTTTATTTCCAAAACACCAATTTTCCACCATTAGGGATACTCCAACCCTATTATTTTC-GAGGGG
* * * * * * * * **
3135830 ATACTCTAACCTCGATTTTATTTCTAAAATACTAATTTTTCACCATTGGGGACACTCCAACCCCA
65 ATACTCCAACCCCAATTTTATTTCCAAAACACTGATTTTTCACCATTAGGGATACTCCAACCCTG
* *
3135895 TTATTTTT-AAGAGGATACTCCAAACCTGA
130 TTATTTTTGAA-AGGATACTCCAACCCCGA
* * * * *
3135924 TTTTATGTT-TAAAACACCGATTTT---CCATTAGGGATACTCCAACCATGTTATTTTCGAGGGA
1 TTTTAT-TTCCAAAACACCAATTTTCCACCATTAGGGATACTCCAACCCTATTATTTTCGAGGGG
* *
3135985 ATACTCCAACCCCGATTTTATTTCCAAAACACTGATTTTTCACCATCAGGGATACTCCAACCCTG
65 ATACTCCAACCCCAATTTTATTTCCAAAACACTGATTTTTCACCATTAGGGATACTCCAACCCTG
3136050 TTATTTTTGAAAGGATACTCCAACCCC-A
130 TTATTTTTGAAAGGATACTCCAACCCCGA
* * ** * * *
3136078 GTTTTATTTCTAAAAAATTAATTTTTCACTATTAGGGATACTCCAACCCTATTATTTTCAAGGGG
1 -TTTTATTTCCAAAACACCAATTTTCCACCATTAGGGATACTCCAACCCTATTATTTTCGAGGGG
* * * * *
3136143 ATACTCCAACCCCAATTTTGTTTCCAAAATA-TCGACTTTTCACCA-TGGGGAATACTCTAACCC
65 ATACTCCAACCCCAATTTTATTTCCAAAACACT-GATTTTTCACCATTAGGG-ATACTCCAACCC
3136206 CATTTTTATT
Statistics
Matches: 357, Mismatches: 69, Indels: 26
0.79 0.15 0.06
Matches are distributed among these distances:
154 6 0.02
155 116 0.32
156 10 0.03
157 114 0.32
158 111 0.31
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.34
Consensus pattern (158 bp):
TTTTATTTCCAAAACACCAATTTTCCACCATTAGGGATACTCCAACCCTATTATTTTCGAGGGGA
TACTCCAACCCCAATTTTATTTCCAAAACACTGATTTTTCACCATTAGGGATACTCCAACCCTGT
TATTTTTGAAAGGATACTCCAACCCCGA
Found at i:3136199 original size:51 final size:50
Alignment explanation
Indices: 3136139--3136239 Score: 132
Period size: 51 Copynumber: 2.0 Consensus size: 50
3136129 TTATTTTCAA
* *
3136139 GGGGATACTCCAACCCCAATTTTGTTTCCAAAATATCGACTTT-TCACCAT
1 GGGGATACTCCAACCCCAATTTTATTTCCAAAATATC-AATTTCTCACCAT
* * *
3136189 GGGGAATACTCTAACCCCATTTTTATTTTCAAAATATCAATTTCTCACCAT
1 GGGG-ATACTCCAACCCCAATTTTATTTCCAAAATATCAATTTCTCACCAT
3136240 TAACAATACT
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
50 8 0.18
51 36 0.82
ACGTcount: A:0.30, C:0.26, G:0.10, T:0.35
Consensus pattern (50 bp):
GGGGATACTCCAACCCCAATTTTATTTCCAAAATATCAATTTCTCACCAT
Found at i:3136205 original size:130 final size:130
Alignment explanation
Indices: 3136064--3136304 Score: 331
Period size: 130 Copynumber: 1.9 Consensus size: 130
3136054 TTTTGAAAGG
* * * ***
3136064 ATACTCCAACCCCAGTTTTA-TTTCTAAAAAATTAATTTTTCACTATTAGGGATACTCCAACCCT
1 ATACTCCAACCCCAGTTTTATTTTC-AAAAAATCAATTTCTCACCATTAACAATACTCCAACCCT
* *
3136128 ATTATTTTCAAGGGGATACTCCAACCCCAATTTTGTTTCCAAAATATCGACTTTTCACCATGGGG
65 ATTATTTTCAAGGGGATACTCCAACCCCAATTTTATCTCCAAAATATCGACTTTTCACCATGGGG
3136193 A
130 A
* * * *
3136194 ATACTCTAACCCCATTTTTATTTTCAAAATATCAATTTCTCACCATTAACAATACTTCAACCCTA
1 ATACTCCAACCCCAGTTTTATTTTCAAAAAATCAATTTCTCACCATTAACAATACTCCAACCCTA
* * *
3136259 TTGTTTTCAAGGGGATACTCCAACCTCATTTTTATCTCCAAAATAT
66 TTATTTTCAAGGGGATACTCCAACCCCAATTTTATCTCCAAAATAT
3136305 TAAATTTTTC
Statistics
Matches: 95, Mismatches: 15, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
130 91 0.96
131 4 0.04
ACGTcount: A:0.32, C:0.24, G:0.08, T:0.36
Consensus pattern (130 bp):
ATACTCCAACCCCAGTTTTATTTTCAAAAAATCAATTTCTCACCATTAACAATACTCCAACCCTA
TTATTTTCAAGGGGATACTCCAACCCCAATTTTATCTCCAAAATATCGACTTTTCACCATGGGGA
Found at i:3136248 original size:51 final size:51
Alignment explanation
Indices: 3136143--3136256 Score: 122
Period size: 51 Copynumber: 2.2 Consensus size: 51
3136133 TTTCAAGGGG
* * ***
3136143 ATACTCCAACCCCAATTTTGTTTCCAAAATATCGACTTTTCACCATGGGGA
1 ATACTCCAACCCCAATTTTATTTCCAAAATATCGAATTTTCACCATGAACA
* * * *
3136194 ATACTCTAACCCCATTTTTATTTTCAAAATATC-AATTTCTCACCATTAACA
1 ATACTCCAACCCCAATTTTATTTCCAAAATATCGAATTT-TCACCATGAACA
*
3136245 ATACTTCAACCC
1 ATACTCCAACCC
3136257 TATTGTTTTC
Statistics
Matches: 51, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
50 4 0.08
51 47 0.92
ACGTcount: A:0.32, C:0.28, G:0.05, T:0.34
Consensus pattern (51 bp):
ATACTCCAACCCCAATTTTATTTCCAAAATATCGAATTTTCACCATGAACA
Found at i:3138705 original size:19 final size:21
Alignment explanation
Indices: 3138681--3138728 Score: 75
Period size: 19 Copynumber: 2.4 Consensus size: 21
3138671 TTACATTTTC
3138681 TATCGATACG-TTGTTCATT-
1 TATCGATACGATTGTTCATTG
3138700 TATCGATA-GATTGTTCATTG
1 TATCGATACGATTGTTCATTG
3138720 TATCGATAC
1 TATCGATAC
3138729 ATTTTTTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
18 1 0.04
19 17 0.65
20 8 0.31
ACGTcount: A:0.25, C:0.15, G:0.17, T:0.44
Consensus pattern (21 bp):
TATCGATACGATTGTTCATTG
Found at i:3141159 original size:79 final size:78
Alignment explanation
Indices: 3141064--3141426 Score: 379
Period size: 79 Copynumber: 4.6 Consensus size: 78
3141054 ATTCATGTTT
* * * * *
3141064 TTATTTCCGAGGGGATACTCCAATCCCGATTTTATTCCGAAAAAAGTAATTTTTCACAATCAGGG
1 TTATTTTCGAGAGGATACTCCAACCCCGATTTTATTCC-AAAATACTAATTTTTCACAATCAGGG
3141129 ATACTCCAACCCCA
65 ATACTCCAACCCCA
* * * * * *
3141143 TTATTTT-TATGAGGATACTCCAACCCCGATTTTATTTCTAAAATATTAATTTTTTACCATCTGG
1 TTATTTTCGA-GAGGATACTCCAACCCCGATTTTA-TTCCAAAATACTAATTTTTCACAATCAGG
3141207 GAATACTCCAACCCCA
64 G-ATACTCCAACCCCA
* * * * *
3141223 TTATTTTCGAAAGGATACTCCAACCCCGGTTTTATTTCCAAAACACTAATTTTCCATAATCAGGG
1 TTATTTTCGAGAGGATACTCCAACCCCGATTTTA-TTCCAAAATACTAATTTTTCACAATCAGGG
3141288 ATACTCCAACCCCA
65 ATACTCCAACCCCA
* **
3141302 TTATTTTCGAG-GAGATACTCCAACCCCGATTTTATATTCAAAATACTAATTTTTCACAATTGGG
1 TTATTTTCGAGAG-GATACTCCAACCCCGATTTTAT-TCCAAAATACTAATTTTTCACAATCAGG
***
3141366 GATACTTTGACCCCA
64 GATACTCCAACCCCA
* * * ** *
3141381 TTATTCTCGAGGGGATACCCTCAACCTTGGTTTTATCTCCAAAATA
1 TTATTTTCGAGAGGATACTC-CAACCCCGATTTTAT-TCCAAAATA
3141427 TTAAACTTTT
Statistics
Matches: 237, Mismatches: 39, Indels: 15
0.81 0.13 0.05
Matches are distributed among these distances:
78 3 0.01
79 143 0.60
80 90 0.38
81 1 0.00
ACGTcount: A:0.30, C:0.24, G:0.12, T:0.34
Consensus pattern (78 bp):
TTATTTTCGAGAGGATACTCCAACCCCGATTTTATTCCAAAATACTAATTTTTCACAATCAGGGA
TACTCCAACCCCA
Found at i:3141300 original size:159 final size:158
Alignment explanation
Indices: 3141076--3141424 Score: 434
Period size: 159 Copynumber: 2.2 Consensus size: 158
3141066 ATTTCCGAGG
* * * *
3141076 GGATACTCCAATCCCGATTTTA-TTCCGAAAAAAGTAATTTTTCACAATCAGGGATACTCCAACC
1 GGATACTCCAACCCCGGTTTTATTTCC-AAAAAACTAATTTTCCACAATCAGGGATACTCCAACC
* * * * *
3141140 CCATTATTTT-TATGAGGATACTCCAACCCCGATTTTAT-TTCTAAAATATTAATTTTTTACCAT
65 CCATTATTTTCGAGGA-GATACTCCAACCCCGATTTTATATTC-AAAATACTAATTTTTCACAAT
*
3141203 CTGGGAATACTCCAACCCCATTATTTTCGAAA
128 -TGGGAATACTCCAACCCCATTATTCTCGAAA
* *
3141235 GGATACTCCAACCCCGGTTTTATTTCCAAAACACTAATTTTCCATAATCAGGGATACTCCAACCC
1 GGATACTCCAACCCCGGTTTTATTTCCAAAAAACTAATTTTCCACAATCAGGGATACTCCAACCC
3141300 CATTATTTTCGAGGAGATACTCCAACCCCGATTTTATATTCAAAATACTAATTTTTCACAATTGG
66 CATTATTTTCGAGGAGATACTCCAACCCCGATTTTATATTCAAAATACTAATTTTTCACAATTGG
* *** **
3141365 GGATACTTTGACCCCATTATTCTCGAGG
131 GAATACTCCAACCCCATTATTCTCGAAA
* ** *
3141393 GGATACCCTCAACCTTGGTTTTATCTCCAAAA
1 GGATACTC-CAACCCCGGTTTTATTTCCAAAA
3141425 TATTAAACTT
Statistics
Matches: 164, Mismatches: 22, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
158 31 0.19
159 123 0.75
160 10 0.06
ACGTcount: A:0.31, C:0.25, G:0.11, T:0.33
Consensus pattern (158 bp):
GGATACTCCAACCCCGGTTTTATTTCCAAAAAACTAATTTTCCACAATCAGGGATACTCCAACCC
CATTATTTTCGAGGAGATACTCCAACCCCGATTTTATATTCAAAATACTAATTTTTCACAATTGG
GAATACTCCAACCCCATTATTCTCGAAA
Found at i:3144487 original size:474 final size:471
Alignment explanation
Indices: 3143469--3144788 Score: 1738
Period size: 474 Copynumber: 2.8 Consensus size: 471
3143459 TAAAGATCAT
* * * * * *
3143469 TATCATTTATCCTAATAAGGCGAAGACTATATTTATGGTGCCTAATCCTAAAAAGAATGAGGATA
1 TATCATCTATCCTAATAA---GAAGACTATGTTTATGGTGACTAATCCTGAAAAGAATGGGGATT
* * * *
3143534 AGTATGACTATTCATGTTTCTCTTACTTAAGAGACAAACTTTGATTCTATCAAAAACGGTAAGAA
63 AGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAC-GT-TGAA
* * * * *
3143599 GAAAAGCTTTTTTTGTGACACTAAAGCATCAATGTTATGTATCCTAATGAAGGGAATGTGTTTTT
126 AAAAAGCTTTTCTTGCGACACT-AAGCATCAATGTCATGTATCCTAATGAAGGGAATATGTTTTT
* *
3143664 GGTTCTCAATCTTGAAAAGCTTAGAGACTAT-TAC-GAGAATTAATGCTTGTTTTATTTAAGGGA
190 GGTTC-CAATCTTGAAAAGATTAGAGA-T-TGTACTGAGAATTAATGCTTGTCTTATTTAAGGGA
* * *
3143727 TGAACTTTGATTTTAAGGAAAATATGGCAAAGAAAATATTTTAATGCAAAAGAAAATCATCAGTA
252 TGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAGTA
*
3143792 TCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC-CAAAAATGAATGAAGATCATTA
317 TCATTTAACCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC-AAAATGAATGAAGATCATTA
* *
3143856 CTAGAATCCATGTTTAGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTTGTAGGAAAAAG
381 CTAGAATCCATGTTTAGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTAGGAAAAAC
* *
3143921 CCTTTCTGGGTAAACCAAAACATCAA
446 CCTTTCTGCGTAAACCAAAACAACAA
* * * * *
3143947 TATCATCTATCCTAATAAGAAAACTATGCTTATGGTGA-TGTATCTTGAAAAGAGTGGGGATTAG
1 TATCATCTATCCTAATAAGAAGACTATGTTTATGGTGACT-AATCCTGAAAAGAATGGGGATTAG
*
3144011 TATGAGTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCCAAAAA-GTTGGAAAA
65 TATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT-CAAAAACGTT-GAAAA
*
3144075 AAAGCTGTTCTTGCGACAGCTAAGCATCAATGTCATGTATCCTAATGAAGGGAATATGTTTTTGG
128 AAAGCTTTTCTTGCGACA-CTAAGCATCAATGTCATGTATCCTAATGAAGGGAATATGTTTTTGG
* * * * * *
3144140 TTGCCAATCTTGAAAGGATTGGAGATTGTGCTGAGAATTGATGGTTGTCTTATTTAGGGGATGAA
192 TT-CCAATCTTGAAAAGATTAGAGATTGTACTGAGAATTAATGCTTGTCTTATTTAAGGGATGAA
*
3144205 CTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAGTATCAT
256 CTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAGTATCAT
* * *
3144270 TTACCCAAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGA
321 TTAACCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGA
* *
3144335 ATCCATGTTT-GCCTCATTTGAGGTACGAACTTAGACTTTACAAAAATTGGTGGGAAAAACCCTT
386 ATCCATGTTTAG-CTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTAGGAAAAACCCTT
*
3144399 TCTTGCG-AAACCAAAGCAACAA
450 TC-TGCGTAAACCAAAACAACAA
* * * *
3144421 TATCTTGTATCCTAATGAGAAGACTATGTTTATGGTGACTAATCCTGAAAATAATGGGGATTAGT
1 TATCATCTATCCTAATAAGAAGACTATGTTTATGGTGACTAATCCTGAAAAGAATGGGGATTAGT
* * * * *
3144486 ATGAGTGTTCATGTTTGTTTTATTTGAGAGACAAACTTTGATTCCATCAAAAATGTTGAAAGAAA
66 ATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGTTGAAA-AAA
* * * * * * *
3144551 AGATTTTCCTGCAACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATCTATTTTTGGTT
130 AGCTTTTCTTGCGACA-CTAAGCATCAATGTCATGTATCCTAATGAAGGGAATATGTTTTTGGTT
* * * *
3144616 CCTAATCTTGAAACGATTAGAGACTGTTA-TGAGAATCAATGCTTGTCTTATTTAAGGGATGAAA
194 CC-AATCTTGAAAAGATTAGAGATTG-TACTGAGAATTAATGCTTGTCTTATTTAAGGGATGAAC
* * * * * *
3144680 TATGATTTTAAGGAAAATAGGGCAATGAAAAGATTTCCATGCAAAAGAAAATCTTCAGCATCATT
257 TTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAGTATCATT
* *
3144745 TAACCTAATAAGGAGAATGTGTTTGTAGTGCCTAATCACAAAAT
322 TAACCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAT
3144789 AGGGCAATGA
Statistics
Matches: 739, Mismatches: 88, Indels: 34
0.86 0.10 0.04
Matches are distributed among these distances:
472 1 0.00
473 16 0.02
474 612 0.83
475 87 0.12
476 6 0.01
478 17 0.02
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (471 bp):
TATCATCTATCCTAATAAGAAGACTATGTTTATGGTGACTAATCCTGAAAAGAATGGGGATTAGT
ATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGTTGAAAAAAA
GCTTTTCTTGCGACACTAAGCATCAATGTCATGTATCCTAATGAAGGGAATATGTTTTTGGTTCC
AATCTTGAAAAGATTAGAGATTGTACTGAGAATTAATGCTTGTCTTATTTAAGGGATGAACTTTG
ATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAGTATCATTTAAC
CTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA
TGTTTAGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTAGGAAAAACCCTTTCTGCG
TAAACCAAAACAACAA
Found at i:3144848 original size:91 final size:91
Alignment explanation
Indices: 3144693--3144879 Score: 347
Period size: 91 Copynumber: 2.1 Consensus size: 91
3144683 GATTTTAAGG
3144693 AAAATAGGGCAATGAAAAGATTTCCATGCAAAAGAAAATCTTCAGCATCATTTAACCTAATAAGG
1 AAAATAGGGCAATGAAAAGATTTCCATGCAAAAGAAAATCTTCAGCATCATTTAACCTAATAAGG
3144758 AGAATGTGTTTGTAGTGCCTAATCAC
66 AGAATGTGTTTGTAGTGCCTAATCAC
** *
3144784 AAAATAGGGCAATGAAAAGATTTCCATGCAAAAGAAAATCTTTTGCATCATTTATCCTAATAAGG
1 AAAATAGGGCAATGAAAAGATTTCCATGCAAAAGAAAATCTTCAGCATCATTTAACCTAATAAGG
3144849 AGAATGTGTTTGTAGTGCCTAATCAC
66 AGAATGTGTTTGTAGTGCCTAATCAC
3144875 AAAAT
1 AAAAT
3144880 GAATGAAGAT
Statistics
Matches: 93, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
91 93 1.00
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (91 bp):
AAAATAGGGCAATGAAAAGATTTCCATGCAAAAGAAAATCTTCAGCATCATTTAACCTAATAAGG
AGAATGTGTTTGTAGTGCCTAATCAC
Found at i:3146622 original size:159 final size:158
Alignment explanation
Indices: 3145031--3148529 Score: 724
Period size: 159 Copynumber: 22.1 Consensus size: 158
3145021 TGCCTAATTC
* * **
3145031 TGAAAAGAATAGGGGATTAGTATGACTATTCAAT-TTTGTCATT-TTTAAGAGACAAACTTTGAT
1 TGAAAAGAAT-GGAGATTAGTAAGAGAATTC-ATGTTTGTC-TTATTTAAGAGACAAACTTTGAT
* * * * * * *
3145094 TCAATAAAAAATGTTGGAAGGAAAAGCTTTTCTTGTGACACCAAAGCATCAACATCATGTATCTT
63 TCTATCAAAAA-GTTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCT
* * * * * *
3145159 AATGAAGGGGATGTGTTTTTGGTTCCTAATCT
127 AATAAAGAGAATGTGCTTTTGGTGCCCAATCT
* * * * * * ** *
3145191 TGAAAAGAATGGAAACTATTACGAGAA-TCGACGCTTGTCTTATTTAAGCA-ATGAGCTTTGATT
1 TGAAAAGAATGGAGATTAGTAAGAGAATTC-ATGTTTGTCTTATTTAAG-AGACAAACTTTGATT
* *** * * * ** * * * *
3145254 TTAAGGAAAA-TAAGGCAAAGAAATGATTTT-TATGC-AATAGAAAATCATCAATAACATTTACC
64 CTATCAAAAAGT-TGG-AAAGAAAAGCTTTTCT-TGCGAA-ACCAAAGCATCAATATCATGTATC
* * * * ***
3145316 CTAA-AGAGGAGAATGAG-TTTATTGCGCTTGATC-
125 CTAATA-AAGAGAATGTGCTTT-TGGTGCCCAATCT
** * * * ** * * * * *
3145349 ACAAAATGAATGAAGATCATTATTAGAATCCATGTTTGTCTCATTTGAG-GCACGAACTTAGACT
1 TGAAAA-GAATGGAGATTAGTAAGAGAATTCATGTTTGTCTTATTTAAGAG-ACAAACTTTGA-T
* * ** * * * * *
3145413 T-TA-CAAAAATTTGTAGGGAAAAAGCCTTTCTTGTGAAGCCGAAGCATCAATATCGTGTATCCT
63 TCTATCAAAAAGTTGGAAAG-AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCT
** * * *
3145476 AATGAGAAGACTATGT--TTATGGTGTCTAATCT
127 AAT-A-AAGAGAATGTGCTTTTGGTGCCCAATCT
* * * *
3145508 TGAAAAGAA-GTAGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGA-ACCAAACTTTAATT
1 TGAAAAGAATGGA-GATTAGTAAGAGAATTCATGTTTGTCTTATTTAAGAGA-CAAACTTTGATT
* * * *
3145571 CTATCAAAATCA-TTGGAAAGGAAAGCTTTTCTTGCGACACCAAAGCATCATTATCATATATCCT
64 CTATCAAAA--AGTTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCT
** * * * * * * *
3145635 GTTGAAGGGAATGAGTTTTTAGTTCCCAGTCT
127 AATAAAGAGAATGTGCTTTTGGTGCCCAATCT
* * * * * * * **
3145667 TAAAAATATTGGAGACTATTACGAGAA-TCAATGCTTGTCTTATTTAACGA-TTAAACTTTGATT
1 TGAAAAGAATGGAGATTAGTAAGAGAATTC-ATGTTTGTCTTATTTAA-GAGACAAACTTTGATT
* *** * * * * * ** * * * * *
3145730 TTAAGGAAAA-TAAGGCAAAGAAAAGGTTTCCATGCAAAAAGAAAATCATTAGTATTATTTATCC
64 CTATCAAAAAGT-TGG-AAAGAAAAGCTTTTCTTGC-GAAACCAAAGCATCAATATCATGTATCC
* * * *
3145794 TATTAAGGAGAATGTG-TTTGTAGTGCCTAATC-
126 TAATAAAGAGAATGTGCTTT-TGGTGCCCAATCT
** ** * * ** ** * *
3145826 ACAAAATGAATAAAGTATCA-TCACA-AGAATCCATGTTTCACAGATTT--GAGGCATGAACTTA
1 TGAAAA-GAATGGAG-ATTAGT-A-AGAGAATTCATGTTTGTCTTATTTAAGAGACA--AACTTT
* * * * *
3145887 GACTT-TA-CAAAAA-TTAGGTAAAG-AAAGCCTTTCTTGCAAAACTAGAGCATCAATATCGTGT
60 GA-TTCTATCAAAAAGTT-GG-AAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGT
* * * * *
3145948 ATCCTTATGAGAAGAG--TATGATTATGGTGCCTAATCT
122 ATCCTAAT-A-AAGAGAATGTGCTTTTGGTGCCCAATCT
* * * ** * * *
3145985 TGAAAATAATAGG-GATTGGTATGACTATTCATGTTTGTCTTATTTAAAAGATAAATTTTGATTC
1 TGAAAAGAAT-GGAGATTAGTAAGAGAATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
* * * * * *
3146049 TACCAAAAATGTTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCCTGAATGTCATGTATCCTAA
65 TATCAAAAA-GTTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAA
* * *
3146114 TAAAGAGATTGTGTTTTTGGTTCCCAATCT
129 TAAAGAGAATGTGCTTTTGGTGCCCAATCT
* * * * * * *
3146144 TGAAAAGAATGGAGACTA-TTAGAAGAATTTATG-TTGTCTT-TGTTAAGGGATAAACCTTAATT
1 TGAAAAGAATGGAGATTAGTAAG-AGAATTCATGTTTGTCTTAT-TTAAGAGACAAACTTTGATT
* * * * * * * * * ** * *
3146206 TTAACGAAAA-TAAGGCAATGAAAAGATTTTCATACAAAAGAAAATCATCAATATCATTTATCCT
64 CTATCAAAAAGT-TGG-AAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCT
* * * *
3146270 AATAAGGAGAATGTGCTTATAGTGCCTAATC-
127 AATAAAGAGAATGTGCTTTTGGTGCCCAATCT
** * * ** * * ** * *
3146301 ACAAAATGAATGAAGATCT-TTATTAGAATCCATGCTTGTCTTATTTGTG-GCACGAACTTAGAC
1 TGAAAA-GAATGGAGAT-TAGTAAGAGAATTCATGTTTGTCTTATTTAAGAG-ACAAACTTTGA-
* * * *
3146364 TT-TAT-AAAAA-TTTGAAGGAAAAAGCCTTTCTTGTGAATA-CAAAGCATCAATATCATGTATC
62 TTCTATCAAAAAGTTGGAAAG-AAAAGCTTTTCTTGCGAA-ACCAAAGCATCAATATCATGTATC
* * * *
3146425 CTAAT-AAGAAAACTATG-TTTATGGTGCCTAATCC
125 CTAATAAAGAGAA-TGTGCTTT-TGGTGCCCAATCT
* *
3146459 TGAAAAGAATGGGGATTAGTAAGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
1 TGAAAAGAATGGAGATTAGTAAGAGAATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
* * ** *
3146524 ATCAAAAACGTTGGAAAGAGAAGTTTTTCTTGCGACTCCAAAGCATCAATGTCATGTATCCTAAT
66 ATCAAAAA-GTTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAAT
*
3146589 GAAAG-GAATGTGCTTTTGGTTCCCAATCT
130 -AAAGAGAATGTGCTTTTGGTGCCCAATCT
* * * * * ** * ** *
3146618 TGAAAAGAATAGAGATT-GTTATGAGAATTGATGCTTATCTTATTTGGGGGATGAACTTTGATTT
1 TGAAAAGAATGGAGATTAG-TAAGAGAATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
** * * * * * ** * * *
3146682 TAAGGAAAATAG--GGCAAATAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCA
65 T-ATCAAAA-AGTTGG-AAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCT
* * *
3146745 AATAAGGAGAATGTG-TTTATAGTGCCTAATC-
127 AATAAAGAGAATGTGCTTT-TGGTGCCCAATCT
** * * * * ** * * * * * * * * *
3146776 ACAAAATAAATGAAGATCATTACTA-AAGTCTAGGATTGGCTCATTTATCG-CACGAACTTAGAT
1 TGAAAA-GAATGGAGATTAGTAAGAGAATTC-ATGTTTGTCTTATTTA-AGAGACAAACTTTGAT
* * * * * * ** *
3146839 TTTA-CAAACTTAAG--GGGATG-AAAGCCTTTCTGGAGAAAATAAAGCATCAATATCATCTATC
63 TCTATCAAA---AAGTTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATC
* * ** ** *
3146900 CTAACAAGAAGACAATGT--TTACGGTGCCTTATTT
125 CTAA-TA-AAGAGAATGTGCTTTTGGTGCCCAATCT
* * * * *
3146934 TGAAAAGAATAGG-GATTAGTATGAGCATTCTTGTTTGTTTTATTTAAGAGACAAACTTTAATTC
1 TGAAAAGAAT-GGAGATTAGTAAGAGAATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
** * * * * * * *
3146998 TATCCAAAACTTTGAAAAGAAAAGCTTTTCTTGTGACACTAAAGCATCAATTTCCTGTATACTAA
65 TAT-CAAAAAGTTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAA
* * *
3147063 TGAAAG-GAATG-CCTTTTTGGTTCCTAATCT
129 T-AAAGAGAATGTGC-TTTTGGTGCCCAATCT
* * * * * * * **
3147093 AGAAAGGAATGGAGACT-GTTACGAGAATTGATGCTTGTCATATTTAATG-GATGAACTTTGATT
1 TGAAAAGAATGGAGATTAG-TAAGAGAATTCATGTTTGTCTTATTTAA-GAGACAAACTTTGATT
* * * * * ** * * *
3147156 -T-TCAAAAAAATAGGGCAAAGAAAAGATTTGCATGC-AAAAAAAATG-ATCAATACCTTTTATC
64 CTATC-AAAAAGT-TGG-AAAGAAAAGCTTTTCTTGCGAAACCAAA-GCATCAATATCATGTATC
* * * * *
3147217 ATAATGAAGAGAATGT-ATTTATAGTGCCTAATC-
125 CTAATAAAGAGAATGTGCTTT-TGGTGCCCAATCT
** * ** ** * * * * *
3147250 ACAAAATGAATGAAGA-CGGTTACTAGAATCCATGTTTGTCTCATTTGAG-GCACGAACTTAGAC
1 TGAAAA-GAATGGAGATTAG-TAAGAGAATTCATGTTTGTCTTATTTAAGAG-ACAAACTTTGA-
* * *
3147313 TTC-A-CAAAAATTGGTGGGAAAG--AAGCTTTTGTTACGAAACCAAAGCATCAATATCATGTAT
62 TTCTATCAAAAA---GTTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTAT
* * * *
3147374 CCTAATAGAA-AGACTATG-TTTAAGGTGCCTAATCT
124 CCTAATA-AAGAGAATGTGCTTT-TGGTGCCCAATCT
* *
3147409 TGAAAAGAATAGG-GATTAGTATGAGAATTCATGTTTGTCTTATTTAGGAGACAAACTTTGATTC
1 TGAAAAGAAT-GGAGATTAGTAAGAGAATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
* * *
3147473 TATCAAAAACGTTGGAAAGAAAAGCTTTTCTTGC-AACACCAAAGCATAAATGTCATGTATCCTG
65 TATCAAAAA-GTTGGAAAGAAAAGCTTTTCTTGCGAA-ACCAAAGCATCAATATCATGTATCCTA
** * * ** * *
3147537 AGGAAGGGAATGTGTTTTTTCTTCCTAATCT
128 ATAAAGAGAATGTGCTTTTGGTGCCCAATCT
* * * * * * * * ***
3147568 TGGAAAGATTTGAGACTATTATGAGAA-TCGATGCTTGTCTTATTTAAGGGATGGACTTTGATTT
1 TGAAAAGAATGGAGATTAGTAAGAGAATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGA-TT
** * * * * * * * *
3147632 CTAGGAAAATAG--GGCAAAGAAATGATTTACTTGCAAAACAAAATCATCAGTATCATTTA-CC-
64 CTATCAAAA-AGTTGG-AAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCT
* * *
3147693 -A-AAA-A-AATGTG-TTCATAGTGCCTAATC-
127 AATAAAGAGAATGTGCTT-TTGGTGCCCAATCT
** * * * ** ** * * * *
3147720 ACAAAATAAATGAAGA-TCGTTACTAGAAACCATGTTTGGCTTATTTGAG-GCACGAACTTAGAC
1 TGAAAA-GAATGGAGATTAG-TAAGAGAATTCATGTTTGTCTTATTTAAGAG-ACAAACTTTGA-
* * * * *
3147783 TT-T-GCAAAAA-TTAGGGGGAAG-AAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTAT
62 TTCTATCAAAAAGTT---GGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTAT
* ** * * * * * *
3147844 CCTTATGAGAAGACTATGTTCTTCTAGTACCTAATCC
124 CCTAAT-A-AAGAGAATGTGCTTTTGGTGCCCAATCT
* * * *
3147881 TGAAGAA-AATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTTAGAGACAAACTTTGATTC
1 TGAA-AAGAATGGAGATTAGTAAGAGAATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
* *
3147945 TATCAAAAACGTTGGAAAGAAAAGCTTTTCTTGCGACAACAAAATG--TCAATGTCATGTATCCT
65 TATCAAAAA-GTTGGAAAGAAAAGCTTTTCTTGCGA-AACCAAA-GCATCAATATCATGTATCCT
* * * * * *
3148008 AATGATGGGAATGTGTTTTTGGTTCCCAATCC
127 AATAAAGAGAATGTGCTTTTGGTGCCCAATCT
* * * * * * * * * **
3148040 TAAAAAGATTGGAGACTT-TTATGACAA-TCAAT-TCTTGTCATCTTCAAGGGATGAACTTTGAT
1 TGAAAAGAATGGAGA-TTAGTAAGAGAATTC-ATGT-TTGTCTTATTTAAGAGACAAACTTTGAT
* ** * * * ** * * * *
3148102 TTTAAGGAAAATAG--GGCAAAGAAAAGATTTCCATGC-AAAGAAAATCATCAGTATAATTTATC
63 TCT-ATCAAAA-AGTTGG-AAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATC
* * * * * **
3148164 CTAGTGAGGAGAATGTG-TATATAGTGCCTTATAC-
125 CTAATAAAGAGAATGTGCT-TTTGGTGCCCAAT-CT
* * * ** * * * * * *
3148198 --AAAATGAATGAAGATCATTACCAGAATCCATGTTTGACTCATTTGAAG-CACGAACTTAGACT
1 TGAAAA-GAATGGAGATTAGTAAGAGAATTCATGTTTGTCTTATTT-AAGAGACAAACTTTGA-T
* * *
3148260 T-TA-CAAAAA-TTGACGAGAAGAAAA-CCTTTCTTACGAAACCAAAGCATCAATATCGTGTATC
63 TCTATCAAAAAGTTG--GA-AAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATC
* * * * * *
3148321 CTTAT-GAGAAAACTATG-TTTATGGTGCCTAATCC
125 CTAATAAAGAGAA-TGTGCTTT-TGGTGCCCAATCT
* * * * ** * * *
3148355 TAAAAAGAATAGTGATTAGTATGATTATTCTTATTTGTCTTATTCAAGAGACAAACTTTGATTCT
1 TGAAAAGAATGGAGATTAGTAAGAGAATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
* * * * * * * * *
3148420 ATCAAAAATGGTGGAAAGAAAAGTTTTTTTTACGACACC-AAGCATCGATGTCATGTCTTCTAAT
66 ATCAAAAA-GTTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAAT
* * * *
3148484 GAAGATAATGTGTTTTTGGTTCCCAATCT
130 AAAGAGAATGTGCTTTTGGTGCCCAATCT
3148513 TGAAATA-AATGGAGATT
1 TGAAA-AGAATGGAGATT
3148530 GTTAGGAGAA
Statistics
Matches: 2356, Mismatches: 758, Indels: 452
0.66 0.21 0.13
Matches are distributed among these distances:
150 1 0.00
151 5 0.00
152 38 0.02
153 56 0.02
154 4 0.00
155 8 0.00
156 38 0.02
157 352 0.15
158 625 0.27
159 936 0.40
160 199 0.08
161 80 0.03
162 11 0.00
163 3 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (158 bp):
TGAAAAGAATGGAGATTAGTAAGAGAATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
ATCAAAAAGTTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATA
AAGAGAATGTGCTTTTGGTGCCCAATCT
Found at i:3146891 original size:475 final size:475
Alignment explanation
Indices: 3144784--3149884 Score: 5421
Period size: 475 Copynumber: 10.7 Consensus size: 475
3144774 GCCTAATCAC
* * ** *
3144784 AAAATAGGGCAATGAAAAGATTTCCATGCAAAAGAAAATCTTTTGCATCATTTATCCTAATAAGG
1 AAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAGTATCATTTATCCTAATAAGG
* * *
3144849 AGAATGTGTTTGTAGTGCCTAATCACAAAATGAATGAAGATCATTACTAAAATCCATGCTTGGCT
66 AGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGGCT
* * ** * * *
3144914 CTTTTGAGGCATGAAAATAGACTTTACAAAAATTGGGGTGAAGAAAGCCTTTCTTGTGAAATCAA
131 CATTTGAGGCACGAACTTAGACTTTACAAAAATTGGGG-GAAGAAAGCCTTTCTGGAGAAACCAA
* * * * * *
3144979 AGCATCAATATTATGTATCTTTATGA-AAAACTATATTTATGATGCCTAATTCTGAAAAGAATAG
195 AGCATCAATATCATGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAATA-
* * * *
3145043 GGGATTAGTATGACTATTCAAT-TTTGTCATT-TTTAAGAGACAAACTTTGATTCAATAAAAAAT
259 GGGATTAGTATGAGTATTC-ATGTTTGTC-TTATTTAAGAGACAAACTTTGATTCTATCAAAAAC
* * ** * *
3145106 GTTGGAAGGAAAAGCTTTTCTTGTGACACCAAAGCATCAACATCATGTATCTTAATGAAGGGGAT
322 GTTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAAT
* * *
3145171 GTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAAACTATTACGAGAATCGACGCTTGTCTTATTT
387 GTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTT
** *
3145236 AAGCAATGAGCTTTGATTTTAAGG
452 AAGGGATGAACTTTGATTTTAAGG
* * ** * * * *
3145260 AAAATAAGGCAAAGAAATGATTTTTATGCAATAGAAAATCATCAATAACATTTACCCTAA-AGAG
1 AAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAGTATCATTTATCCTAATA-AG
* * * * * * *
3145324 GAGAATGAGTTTATTGCGCTTGATCACAAAATGAATGAAGATCATTATTAGAATCCATGTTTGTC
65 GAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGGC
* * * *
3145389 TCATTTGAGGCACGAACTTAGACTTTACAAAAATTTGTAGGGAA-AAAGCCTTTCTTGTGAAGCC
130 TCATTTGAGGCACGAACTTAGACTTTACAAAAA-TTG-GGGGAAGAAAGCCTTTCTGGAGAAACC
* * * * *
3145453 GAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGTCTAATCTTGAAAAGAAG
193 AAAGCATCAATATCATGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAA-
* *
3145518 TA-GGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGA-ACCAAACTTTAATTCTATCAAAAT
257 TAGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGA-CAAACTTTGATTCTATCAAAAA
* * * * * **
3145581 CATTGGAAAGGAAAGCTTTTCTTGCGACACCAAAGCATCATTATCATATATCCTGTTGAAGGGAA
321 CGTTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAA
* * * * * * *
3145646 TGAGTTTTTAGTTCCCAGTCTTAAAAATATTGGAGACTATTACGAGAATCAATGCTTGTCTTATT
386 TGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATT
* *
3145711 TAA-CGATTAAACTTTGATTTTAAGG
451 TAAGGGA-TGAACTTTGATTTTAAGG
* * * * *
3145736 AAAATAAGGCAAAGAAAAGGTTTCCATGCAAAAAGAAAATCATTAGTATTATTTATCCTATTAAG
1 AAAATAGGGCAAAGAAAAGATTTCCATGC-AAAAGAAAATCATCAGTATCATTTATCCTAATAAG
* * * * **
3145801 GAGAATGTGTTTGTAGTGCCTAATCACAAAATGAATAAAGTATCATCACAAGAATCCATGTTTCA
65 GAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG-ATCATTACTAGAATCCATGTTTGG
** * * ** * *
3145866 CAGATTTGAGGCATGAACTTAGACTTTACAAAAATTAGGTAAAGAAAGCCTTTCTTGCA-AAACT
129 CTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGGGGAAGAAAGCCTTTC-TGGAGAAACC
* * * * * * * *
3145930 AGAGCATCAATATCGTGTATCCTTATGAGAAGAGTATGATTATGGTGCCTAATCTTGAAAATAAT
193 AAAGCATCAATATCATGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAAT
* * * * * * *
3145995 AGGGATTGGTATGACTATTCATGTTTGTCTTATTTAAAAGATAAATTTTGATTCTACCAAAAATG
258 AGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACG
* * * * * *
3146060 TTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCCTGAATGTCATGTATCCTAATAAAGAGATTG
323 TTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATG
**
3146125 TGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTA-GAAGAATTTATG-TTGTCTT-TGT
388 TGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACG-AGAATCGATGCTTGTCTTAT-T
* * * *
3146187 TAAGGGATAAACCTTAATTTTAACG
451 TAAGGGATGAACTTTGATTTTAAGG
* * * * *
3146212 AAAATAAGGCAATGAAAAGATTTTCATACAAAAGAAAATCATCAATATCATTTATCCTAATAAGG
1 AAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAGTATCATTTATCCTAATAAGG
* * * * *
3146277 AGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCTTTATTAGAATCCATGCTTGTCT
66 AGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGGCT
* * * ** * *
3146342 TATTTGTGGCACGAACTTAGACTTTATAAAAATTTGAAGGAA-AAAGCCTTTCTTGTGAATA-CA
131 CATTTGAGGCACGAACTTAGACTTTACAAAAA-TTGGGGGAAGAAAGCCTTTCTGGAGAA-ACCA
* *
3146405 AAGCATCAATATCATGTATCCTAATAAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAATG
194 AAGCATCAATATCATGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAATA
*
3146470 GGGATTAGTAAGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGT
259 GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGT
* * * *
3146535 TGGAAAGAGAAGTTTTTCTTGCGACTCCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGT
324 TGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGT
* * * * * * * **
3146600 GCTTTTGGTTCCCAATCTTGAAAAGAATAGAGATTGTTATGAGAATTGATGCTTATCTTATTTGG
389 GTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAA
3146665 GGGATGAACTTTGATTTTAAGG
454 GGGATGAACTTTGATTTTAAGG
* * *
3146687 AAAATAGGGCAAATAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCAAATAAGG
1 AAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAGTATCATTTATCCTAATAAGG
* * * *
3146752 AGAATGTGTTTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTA-AAGTCTAGGATTGGC
66 AGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAA-TCCATGTTTGGC
* * * * * **
3146816 TCATTT-ATCGCACGAACTTAGATTTTAC-AAACTTAAGGGGATGAAAGCCTTTCTGGAGAAAAT
130 TCATTTGA-GGCACGAACTTAGACTTTACAAAAATT-GGGGGAAGAAAGCCTTTCTGGAGAAACC
* ** * * * * **
3146879 AAAGCATCAATATCATCTATCCTAACAAGAAGACAATGTTTACGGTGCCTTATTTTGAAAAGAAT
193 AAAGCATCAATATCATGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAAT
* * * * * *
3146944 AGGGATTAGTATGAGCATTCTTGTTTGTTTTATTTAAGAGACAAACTTTAATTCTATCCAAAACT
258 AGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACG
* * * * * * *
3147009 TTGAAAAGAAAAGCTTTTCTTGTGACACTAAAGCATCAATTTCCTGTATACTAATGAAAGGAATG
323 TTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATG
** * * * * * *
3147074 CCTTTTTGGTTCCTAATCTAGAAAGGAATGGAGACTGTTACGAGAATTGATGCTTGTCATATTTA
388 TGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTA
* *
3147139 ATGGATGAACTTTGATTTTCAA-A
453 AGGGATGAACTTTGATTTT-AAGG
* * * * * *
3147162 AAAATAGGGCAAAGAAAAGATTTGCATGCAAAA-AAAATGATCAATACCTTTTATCATAATGAA-
1 AAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAGTATCATTTATCCTAAT-AAG
* * *
3147225 GAGAATGTATTTATAGTGCCTAATCACAAAATGAATGAAGA-CGGTTACTAGAATCCATGTTTGT
65 GAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATC-ATTACTAGAATCCATGTTTGG
* *
3147289 CTCATTTGAGGCACGAACTTAGACTTCACAAAAATTGGTGGGAA-AGAAG-CTTT-TGTTACGAA
129 CTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG-GGGAAGA-AAGCCTTTCTG-GA-GAA
* *
3147351 ACCAAAGCATCAATATCATGTATCCTAAT-AGAAAGACTATGTTTAAGGTGCCTAATCTTGAAAA
190 ACCAAAGCATCAATATCATGTATCCTAATGAGAAA-ACTATGTTTATGGTGCCTAATCCTGAAAA
* *
3147415 GAATAGGGATTAGTATGAGAATTCATGTTTGTCTTATTTAGGAGACAAACTTTGATTCTATCAAA
254 GAATAGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAA
* * * *
3147480 AACGTTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATAAATGTCATGTATCCTGAGGAAGGG
319 AACGTTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGG
** * * * * *
3147545 AATGTGTTTTTTCTTCCTAATCTTGGAAAGATTTGAGACTATTATGAGAATCGATGCTTGTCTTA
384 AATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTA
*
3147610 TTTAAGGGATGGACTTTGATTTCT-AGG
449 TTTAAGGGATGAACTTTGATTT-TAAGG
* * * *
3147637 AAAATAGGGCAAAGAAATGATTTACTTGCAAAACAAAATCATCAGTATCATTTA-CC-AA-AA--
1 AAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAGTATCATTTATCCTAATAAGG
* * * *
3147697 A-AATGTGTTCATAGTGCCTAATCACAAAATAAATGAAGATCGTTACTAGAAACCATGTTTGGCT
66 AGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGGCT
* * *
3147761 TATTTGAGGCACGAACTTAGACTTTGCAAAAATTAGGGGGAAGAAAGCCTTTCTTGCA-AAACCA
131 CATTTGAGGCACGAACTTAGACTTTACAAAAATT-GGGGGAAGAAAGCCTTTC-TGGAGAAACCA
* * * * * *
3147825 AAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTCTTCTAGTACCTAATCCTGAAGAA-A
194 AAGCATCAATATCATGTATCCTAATGAGAAAACTATG-T-TTATGGTGCCTAATCCTGAA-AAGA
* *
3147889 ATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTTAGAGACAAACTTTGATTCTATCAAAAA
256 ATAGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA
* *** *
3147954 CGTTGGAAAGAAAAGCTTTTCTTGCGACAACAAAATGTCAATGTCATGTATCCTAATGATGGGAA
321 CGTTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAA
* * * * * * * * * *
3148019 TGTGTTTTTGGTTCCCAATCCTAAAAAGATTGGAGACTTTTATGACAATCAATTCTTGTCATCTT
386 TGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATT
*
3148084 CAAGGGATGAACTTTGATTTTAAGG
451 TAAGGGATGAACTTTGATTTTAAGG
* * *
3148109 AAAATAGGGCAAAGAAAAGATTTCCATGC-AAAGAAAATCATCAGTATAATTTATCCTAGTGAGG
1 AAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAGTATCATTTATCCTAATAAGG
* * * *
3148173 AGAATGTGTATATAGTGCCTTAT-ACAAAATGAATGAAGATCATTACCAGAATCCATGTTTGACT
66 AGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGGCT
* * * * *
3148237 CATTTGAAGCACGAACTTAGACTTTACAAAAATTGACGAGAAGAAAACCTTTCT-TACGAAACCA
131 CATTTGAGGCACGAACTTAGACTTTACAAAAATTG-GGGGAAGAAAGCCTTTCTGGA-GAAACCA
* * *
3148301 AAGCATCAATATCGTGTATCCTTATGAGAAAACTATGTTTATGGTGCCTAATCCTAAAAAGAATA
194 AAGCATCAATATCATGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAATA
* * * * * * *
3148366 GTGATTAGTATGATTATTCTTATTTGTCTTATTCAAGAGACAAACTTTGATTCTATCAAAAATGG
259 GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGT
* * * * * * **
3148431 TGGAAAGAAAAGTTTTTTTTACGACACC-AAGCATCGATGTCATGTCTTCTAATGAAGATAATGT
324 TGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGT
* * * *
3148495 GTTTTTGGTTCCCAATCTTGAAATA-AATGGAGATTGTTAGGAGAATCGATGCTTGTTTTATTTA
389 GTTTTTGGTTCCCAATCTTGAAA-AGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTA
* * * *
3148559 GGGGTTGAACTTTGGTTTTTAGG
453 AGGGATGAACTTTGATTTTAAGG
* *
3148582 AAAATAGGGCAAAGAAAATATTTCCATTCAAAAGAAAATATTTCCATTCAAAAGAAAATCATCAA
1 AAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG-AAA-A--T-CA-TC---AG----T-ATC--
* * * * *
3148647 TATCCTTTACCCTAATAAGGAGATTGTGTTTCTAGTACCTAAT-A-AGAAAT---TAAAGATCAT
50 -A---TTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCACA-AAATGAATGAAGATCAT
* * * * * * *
3148707 TA-TAAGAATCTATGTTTGTCTTATTTTAGGAACGAACCTAGACTTTACAAAAATTGGTGGGAAA
110 TACT-AGAATCCATGTTTGGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG-GGGAAG
* * * * * *
3148771 AAAGCCTTTCTTGTGAATCCAAAGCATCAA-ATTATGTATCTTAATGAGAAAACTATGTTTATGC
173 AAAGCCTTTCTGGAGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAAACTATGTTTATGG
* * * * *
3148835 TGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTATCATACTTAAGGGACAAA
238 TGCCTAATCCTGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAA
* * * *
3148900 CTTTAATTCTATCAAAAACGTTAGG-GAGAAAAAGCTTTTC-TGTCAACACCAAAGCATTAATGT
303 CTTTGATTCTATCAAAAACGTT-GGAAAG-AAAAGCTTTTCTTG-CGACACCAAAGCATCAATGT
* * * * ** * * *
3148963 CATGTATCCTAATGAACGAAAAGTGTTTTTGGTTCCCAATCTTGAAATGTTTGTAGACTGTTATG
365 CATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACG
* * *
3149028 AGAATCGAAGCTTGTCTTATTTAAGGGATGAACTTTGATTTCAAAG
430 AGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGG
* *
3149074 AAAATAGGGCAAAGAAAATATTTCCATGCAAAAAAAAAATCATCAGTA-CTATTTATCCTGAA-A
1 AAAATAGGGCAAAGAAAAGATTTCCATGC-AAAAGAAAATCATCAGTATC-ATTTATCCT-AATA
* * *
3149137 GGGAAAATATGTTTATAGTGCCTAATCACAGAAA-GAATGAAGATCATTACTAGAATCCATGTTT
63 AGGAGAATGTGTTTATAGTGCCTAATCACA-AAATGAATGAAGATCATTACTAGAATCCATGTTT
* * * * * *
3149201 GGCTCATTTAAGGCATGAACTTAGACTTTACAATAATTGGGGGGAAGAATGCCTTCCTTGCA-AA
127 GGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATT-GGGGGAAGAAAGCCTTTC-TGGAGAA
* * * * *
3149265 ACAAAAG-A-CAAATATAATGTATCCTTATGAGAAGACTATGTTTATGGAGCCTAATCCTGAAAA
190 ACCAAAGCATC-AATATCATGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAA
* * * * * * *
3149328 GAACATGGATTTGTATGACTATTCATGTTGGTTTTATATAAGAGACAAACTTTGATTCTATCAAA
254 GAATAGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAA
* * * *
3149393 AATGGTGGAAAAAAAAGCTTTTCTTGCGACACCTAAA-CATGAATGT-ATGTA-CCTTAATGAAG
319 AACGTTGGAAAGAAAAGCTTTTCTTGCGACACC-AAAGCATCAATGTCATGTATCC-TAATGAAG
* * *
3149455 GGAATGTGTTTTTTTGTTCCCAATCTTGAAAAGATTGGAGACCT-TTACGAGAATTGATGCTTGT
382 GGAATGTG-TTTTTGGTTCCCAATCTTGAAAAGAATGGAGA-CTATTACGAGAATCGATGCTTGT
* *
3149519 CTTATTTAAGAGATGAACTTTGATTTTAAGA
445 CTTATTTAAGGGATGAACTTTGATTTTAAGG
* ** * * **
3149550 AAAATAAGAAAAAGAAAAGATTTACATGCAAAAGAAAATC-TCTAGTATCATTTATCCAAAGGAG
1 AAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATC-AGTATCATTTATCCTAATAAG
* *
3149614 GAGAATGTGTTTAT-GCTGCCTAATCAGAAAATGAATGAAGATCACTACTAGAATCCATGTTTGG
65 GAGAATGTGTTTATAG-TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGG
* * * * *
3149678 CTCATTTGAGGCAAGAACGTAGACTTTAAAAAAATTGGGAGGGAAAAAAGCCTTTCCT-GCGAAA
129 CTCATTTGAGGCACGAACTTAGACTTTACAAAAATT-GG-GGGAAGAAAGCCTTT-CTGGAGAAA
* * * * * *
3149742 CCACAGAATCAATATCATGTATCTTGATGAGAATACTATGTTTATGGTGGCTAATCCTGAACAA-
191 CCAAAGCATCAATATCATGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCTGAA-AAG
* * * *
3149806 AATAGGGATTAGTTTAACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAATCTATCAAAA
255 AATAGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAA
* *
3149871 ACATTGGAATGAAA
320 ACGTTGGAAAGAAA
3149885 TGTGAAAGCT
Statistics
Matches: 3848, Mismatches: 652, Indels: 249
0.81 0.14 0.05
Matches are distributed among these distances:
470 130 0.03
471 37 0.01
472 237 0.06
473 163 0.04
474 511 0.13
475 955 0.25
476 725 0.19
477 626 0.16
478 66 0.02
479 3 0.00
480 3 0.00
483 2 0.00
484 2 0.00
487 3 0.00
488 4 0.00
489 1 0.00
490 105 0.03
491 104 0.03
492 131 0.03
493 5 0.00
494 35 0.01
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (475 bp):
AAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAGTATCATTTATCCTAATAAGG
AGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGGCT
CATTTGAGGCACGAACTTAGACTTTACAAAAATTGGGGGAAGAAAGCCTTTCTGGAGAAACCAAA
GCATCAATATCATGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGG
GATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGTTG
GAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGT
TTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGG
GATGAACTTTGATTTTAAGG
Found at i:3148617 original size:20 final size:20
Alignment explanation
Indices: 3148592--3148640 Score: 98
Period size: 20 Copynumber: 2.5 Consensus size: 20
3148582 AAAATAGGGC
3148592 AAAGAAAATATTTCCATTCA
1 AAAGAAAATATTTCCATTCA
3148612 AAAGAAAATATTTCCATTCA
1 AAAGAAAATATTTCCATTCA
3148632 AAAGAAAAT
1 AAAGAAAAT
3148641 CATCAATATC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.55, C:0.12, G:0.06, T:0.27
Consensus pattern (20 bp):
AAAGAAAATATTTCCATTCA
Found at i:3151234 original size:13 final size:13
Alignment explanation
Indices: 3151216--3151241 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3151206 CAATTTTTTG
3151216 TGTATCGATACAT
1 TGTATCGATACAT
3151229 TGTATCGATACAT
1 TGTATCGATACAT
3151242 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3151980 original size:21 final size:21
Alignment explanation
Indices: 3151939--3151982 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
3151929 CTCTCTTTTA
* *
3151939 TCTCCCCCATTTATTAATAAT
1 TCTCCCCCATTAATCAATAAT
3151960 TCTCCCCC-TTAATCAAGTAAT
1 TCTCCCCCATTAATCAA-TAAT
3151981 TC
1 TC
3151983 ATATCAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.27, C:0.32, G:0.02, T:0.39
Consensus pattern (21 bp):
TCTCCCCCATTAATCAATAAT
Found at i:3153808 original size:13 final size:13
Alignment explanation
Indices: 3153790--3153814 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3153780 ATAATCACCC
3153790 TGTATCGATACAG
1 TGTATCGATACAG
3153803 TGTATCGATACA
1 TGTATCGATACA
3153815 AAGAAAAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:3153828 original size:20 final size:20
Alignment explanation
Indices: 3153803--3153879 Score: 73
Period size: 20 Copynumber: 3.6 Consensus size: 20
3153793 ATCGATACAG
3153803 TGTATCGATACAAAGAAAAA
1 TGTATCGATACAAAGAAAAA
* *
3153823 TGTATCGATACATAGAATTTCCAGA
1 TGTATCGATACAAAGAA-----AAA
* *
3153848 TGTATCGATACACAGAAACA
1 TGTATCGATACAAAGAAAAA
3153868 TGTATCGATACA
1 TGTATCGATACA
3153880 TTTTGGACAA
Statistics
Matches: 48, Mismatches: 4, Indels: 10
0.77 0.06 0.16
Matches are distributed among these distances:
20 30 0.62
25 18 0.38
ACGTcount: A:0.43, C:0.16, G:0.16, T:0.26
Consensus pattern (20 bp):
TGTATCGATACAAAGAAAAA
Found at i:3155912 original size:15 final size:15
Alignment explanation
Indices: 3155892--3155922 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
3155882 ATTTCGTTTA
*
3155892 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
3155907 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
3155922 G
1 G
3155923 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:3157384 original size:13 final size:13
Alignment explanation
Indices: 3157366--3157391 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3157356 CAATTTTTTG
3157366 TGTATCGATACAT
1 TGTATCGATACAT
3157379 TGTATCGATACAT
1 TGTATCGATACAT
3157392 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3157456 original size:21 final size:21
Alignment explanation
Indices: 3157430--3157505 Score: 91
Period size: 21 Copynumber: 3.7 Consensus size: 21
3157420 CTGCCAAGAA
* *
3157430 ATGTATTGATACATCTTTTTT
1 ATGTATCGATACATCTTTTTC
****
3157451 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
3157471 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
3157492 ATGTATCGATACAT
1 ATGTATCGATACAT
3157506 TGCAACATGT
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
20 15 0.34
21 29 0.66
ACGTcount: A:0.29, C:0.16, G:0.12, T:0.43
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:3157476 original size:20 final size:20
Alignment explanation
Indices: 3157451--3157523 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
3157441 CATCTTTTTT
3157451 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
3157471 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
3157492 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
3157512 ATGTATCGATAC
1 ATGTATCGATAC
3157524 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:3157487 original size:41 final size:41
Alignment explanation
Indices: 3157430--3157523 Score: 170
Period size: 41 Copynumber: 2.3 Consensus size: 41
3157420 CTGCCAAGAA
* *
3157430 ATGTATTGATACATCTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
3157471 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
3157512 ATGTATCGATAC
1 ATGTATCGATAC
3157524 TTTGAATTGT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.40
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:3158179 original size:31 final size:31
Alignment explanation
Indices: 3158141--3158203 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
3158131 TCCCCCGTTT
3158141 AAAAAAAATCTCCCCCTTAATCAAGTAATTC
1 AAAAAAAATCTCCCCCTTAATCAAGTAATTC
3158172 AAAAAAAATCTCCCCCTTAATCAAGTAATTC
1 AAAAAAAATCTCCCCCTTAATCAAGTAATTC
3158203 A
1 A
3158204 TATCAAAATT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.46, C:0.25, G:0.03, T:0.25
Consensus pattern (31 bp):
AAAAAAAATCTCCCCCTTAATCAAGTAATTC
Found at i:3159854 original size:21 final size:21
Alignment explanation
Indices: 3159830--3159876 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
3159820 TTTGATGCTG
3159830 ATTTTG-A-TGAAGAACGAAGT
1 ATTTTGAAGTGAAGAAC-AAGT
3159850 -TATTTGAAGTGAAGAACAAGT
1 AT-TTTGAAGTGAAGAACAAGT
3159871 ATTTTG
1 ATTTTG
3159877 CAAAAGATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
19 1 0.04
20 4 0.17
21 9 0.39
22 9 0.39
ACGTcount: A:0.38, C:0.04, G:0.23, T:0.34
Consensus pattern (21 bp):
ATTTTGAAGTGAAGAACAAGT
Found at i:3160015 original size:13 final size:13
Alignment explanation
Indices: 3159997--3160035 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
3159987 ATAATCACCC
*
3159997 TGTATCGATACAG
1 TGTATCGATACAA
3160010 TGTATCGATACAA
1 TGTATCGATACAA
3160023 TGTATCGATACAA
1 TGTATCGATACAA
3160036 CAAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3160046 original size:20 final size:20
Alignment explanation
Indices: 3160021--3160099 Score: 70
Period size: 20 Copynumber: 3.7 Consensus size: 20
3160011 GTATCGATAC
3160021 AATGTATCGATACAACAAAA
1 AATGTATCGATACAACAAAA
* *
3160041 AATGTATCGATACATAGAATTTCCA
1 AATGTATCGATACA-ACAA----AA
*
3160066 GATGTATCGATAC-ACAAAA
1 AATGTATCGATACAACAAAA
3160085 ACATGTATCGATACA
1 A-ATGTATCGATACA
3160100 TTTTGGACAT
Statistics
Matches: 46, Mismatches: 6, Indels: 13
0.71 0.09 0.20
Matches are distributed among these distances:
19 1 0.02
20 26 0.57
21 3 0.07
23 3 0.07
25 13 0.28
ACGTcount: A:0.46, C:0.16, G:0.13, T:0.25
Consensus pattern (20 bp):
AATGTATCGATACAACAAAA
Found at i:3162134 original size:15 final size:15
Alignment explanation
Indices: 3162114--3162144 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
3162104 ATTTCGTTTG
*
3162114 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
3162129 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
3162144 G
1 G
3162145 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:3166225 original size:13 final size:13
Alignment explanation
Indices: 3166207--3166232 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3166197 CAATTTTTTG
3166207 TGTATCGATACAT
1 TGTATCGATACAT
3166220 TGTATCGATACAT
1 TGTATCGATACAT
3166233 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3166297 original size:21 final size:21
Alignment explanation
Indices: 3166271--3166346 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
3166261 CTGCCAAGAA
*
3166271 ATGTATCGATACATCTTTTTT
1 ATGTATCGATACATCTTTTTC
****
3166292 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
3166312 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
3166333 ATGTATCGATACAT
1 ATGTATCGATACAT
3166347 TGCAACATGT
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.42
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:3166317 original size:20 final size:20
Alignment explanation
Indices: 3166292--3166364 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
3166282 CATCTTTTTT
3166292 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
3166312 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
3166333 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
3166353 ATGTATCGATAC
1 ATGTATCGATAC
3166365 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:3166328 original size:41 final size:41
Alignment explanation
Indices: 3166271--3166364 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
3166261 CTGCCAAGAA
*
3166271 ATGTATCGATACATCTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
3166312 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
3166353 ATGTATCGATAC
1 ATGTATCGATAC
3166365 TTTGAATTGT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:3167798 original size:21 final size:21
Alignment explanation
Indices: 3167769--3167813 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
3167759 AAGTTTTCAT
*
3167769 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
3167789 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
3167811 TTT
1 TTT
3167814 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:3174026 original size:20 final size:20
Alignment explanation
Indices: 3174000--3174052 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
3173990 TCTCGTGGCC
**
3174000 ATGTATCGATACAATTCATA
1 ATGTATCGATACAAAGCATA
* *
3174020 GTGTATCAATACAAAGCATA
1 ATGTATCGATACAAAGCATA
3174040 ATGTATCGATACA
1 ATGTATCGATACA
3174053 TCTGGGTGAG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.42, C:0.15, G:0.13, T:0.30
Consensus pattern (20 bp):
ATGTATCGATACAAAGCATA
Found at i:3176694 original size:475 final size:475
Alignment explanation
Indices: 3174908--3177960 Score: 3149
Period size: 475 Copynumber: 6.4 Consensus size: 475
3174898 TCCCAATCTT
* * * * *
3174908 GAAAATCAT-TATAATCATATATTCTAATGTGGAGAATGTGTTTATTA-TGCCTAATCGCAAAAT
1 GAAAATCATCAAT-ATCATTTATCCTAATGAGGAGAATGTGTTTA-TAGTGCCTAATCACAAAAT
* * *
3174971 CAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGACATGAACTTAGACTTTACAAAA
64 GAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAA
* * * *
3175036 ATAGGTGGGAAAAAAGCCTTTC-ATGTGAAACCAAAGCATCAATAACATGTATCCTAATGAGAAG
129 ATTGGTGGG-AAAAAGCCTTTCTA-GCGAAACCAAAGCATCAATATCATGTATCTTAATGAGAAG
* * * * * * ** * *
3175100 GCTATGTTT-TGGTTGCTTAATCATAAAAAGAATTGTGATTTGTATGAGTATTTTTATTTGTTTT
192 ACTATGTTTATGG-TGCCTAATCCTGAAAAGAATAGGGATTTGTATGAGTATTCATGTTTGTCTT
* * * * * * * *
3175164 ATTTAAGGGACAAACTTCGAATCTATCAAAAA-ATTGGAAAGAAATGCTTTTCTTACAAAACCAA
256 ATTTAAGAGACAAACTTTGATTCTATCAAAAACGTTGGAAAGAAAAGCTTTTCTTGCGACACCAA
* * * * ** * *
3175228 AGCATCAATGTTAGGTATCCTAATTAGGGGAATGCATTTTTGGTTCCCAGTCCT-AAAAAGATTG
321 AGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAA-ATTG
* * * * *
3175292 GAGACTGTTACGAGAATTGATGATTGTCTTATTTAAAGGATGAACTTTGATTTTAAGGGAAATAG
385 GAGACTGTTTCGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAG
*
3175357 GGC-GAGCAAAAGATTTCCATGCAAAA
450 GGCAAAG-AAAAGATTTCCATGCAAAA
* * *
3175383 GAAAATCATCAGTATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTCATTACAAAATGA
1 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
* * * *
3175448 ATGAAGATTATTACTAGAATTCATATTTGTCTCATTTGAGGCACGAACCTAGACTTTACAAAAAT
66 ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAT
* * * * * * * * * *
3175513 TGGTGGGAAAAAAGTCTTTGTTGCAAAAACAAAGCGTTAATATTATGTATCCTT-TTGAGAGGAC
131 TGGTGGG-AAAAAGCCTTTCTAGCGAAACCAAAGCATCAATATCATGTAT-CTTAATGAGAAGAC
* * * * *
3175577 TAAGTTTATAGTGCCTAATCCT-AAAAGGAATAGGGATTAGTATGACTACTCATGTTTGTCTTAT
194 TATGTTTATGGTGCCTAATCCTGAAAA-GAATAGGGATTTGTATGAGTATTCATGTTTGTCTTAT
* * * * *
3175641 TTAAGAGGCAAACTTTGATTCTATC-AAAACTGTTGGAAATAAATGCTTTTCTTACTACACCAAA
258 TTAAGAGACAAACTTTGATTCTATCAAAAAC-GTTGGAAAGAAAAGCTTTTCTTGCGACACCAAA
** *** * * * * *
3175705 GTGTCAATGTTGGGTATCCTAATGAGGGGAATGTGTTTTTGGTTCCCATTCTTCAAAAGATTAGA
322 GCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAAATTGGA
* * *
3175770 GACTGTGGT-GGGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGG
387 GACTGT-TTCGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGG
* * *
3175834 GCAAACAAAAGATTTTCGTGCAAAA
451 GCAAAGAAAAGATTTCCATGCAAAA
* *
3175859 GAAAATCATCAGTATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCTTAATCACAAAATGA
1 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
* * * ** *
3175924 ATGAAGATTACTACTAAAATCCATGTTTGTCTCATTCAAGGCACGAACTGAGACTTTACAAAAAT
66 ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAT
*** * * * *
3175989 TGGTAAAAAAAAAAGCCTTTCTTGTGAATCCAAAGCATCAATATCATGTAT-TCCAATGAGAAGA
131 TGGT--GGGAAAAAGCCTTTCTAGCGAAACCAAAGCATCAATATCATGTATCT-TAATGAGAAGA
* * *
3176053 CTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGGTTTGTATGAGTATTCATGTTTGTCTTAT
193 CTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTTGTATGAGTATTCATGTTTGTCTTAT
* * * * * * *
3176118 TTAAGAGACAAACTTTGATTCTATCAAAAATGTTAGAAGGAAAAGCTTTTCCTGCAACAACAAAC
258 TTAAGAGACAAACTTTGATTCTATCAAAAACGTTGGAAAGAAAAGCTTTTCTTGCGACACCAAAG
* * * * *
3176183 CATCATTGCCATGTATCCTAATAAAGGGAATGTGTTTTTGGTTCTCAATCTTGAAAAAATTGTAG
323 CATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAAATTGGAG
* * * * * ** *
3176248 ACTGTTTCAAGAATCAATTCTTATCTTATTTAGGGGATGAACTTTCTTTTTAAGGAAAATAGAGC
388 ACTGTTTCGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGC
* *
3176313 AAAGAAAAGATTTTCTTGCAAAA
453 AAAGAAAAGATTTCCATGCAAAA
* * * *
3176336 GAAAATCATCAATTTCATTTATCCTAATGAGGAGAATGTGTTCATAATGCCTAATCGCAAAATGG
1 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAT-G
* * * * * * *
3176401 AA-AAAGATCGTTTCTAGAATCCATGTTTGTCTCATTCGAGGCGCGAGCTTAGACTTCACAAAAA
65 AATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAA
** * *
3176465 TTTATGGGAAAAAGCCTTTCTAGGGAAACCAAAGCATCAATATCATGTATCTTAATGAGAAGACA
130 TTGGTGGGAAAAAGCCTTTCTAGCGAAACCAAAGCATCAATATCATGTATCTTAATGAGAAGACT
* * * * *
3176530 AGGTTTATGGCAT-CC-AATCTTGAAAAGAATAGGGATTTGTATAAGTATTCTTGTTTGTATTAT
195 ATGTTTATGG--TGCCTAATCCTGAAAAGAATAGGGATTTGTATGAGTATTCATGTTTGTCTTAT
* *
3176593 TTAAGAGACAAACTTTGATTCTATCAAAAATGTTGGAAAGAAAAGCTTGTCTTGCGACACCAAAG
258 TTAAGAGACAAACTTTGATTCTATCAAAAACGTTGGAAAGAAAAGCTTTTCTTGCGACACCAAAG
** * * * *
3176658 CATCGTTCTCATGTATCCTAATGAGGGGACTGTGTTTTTGGTTCCCAATCTTGAAAAGAA-TAGA
323 CATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAA-AATTGGA
* * *
3176722 GACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATAAACTTTGATTTTAAGGAAAATAGGG
387 GACTGTTTCGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGG
*
3176787 CTAAGAAAAGATTTCCATGCAAAA
452 CAAAGAAAAGATTTCCATGCAAAA
* **
3176811 GAAAATCATCAATATCATTTATCCTAATGAGGAAAATGTAATTATAGTGCCTAATCACAAAATGA
1 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
* * * * *
3176876 ATCAAGACCATTACTAGAATCCATGTTTTTCTCAATTGTGGCA-GAAACTTAGACTTTACAAAAA
66 ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACG-AACTTAGACTTTACAAAAA
* * * ** * *
3176940 TTGGTGGGAAAAAAGCATTTCTTGC-AAATCCAAAGCGTCAATATGGTGTATCCTT--TTAGAGG
130 TTGGTGGG-AAAAAGCCTTTCTAGCGAAA-CCAAAGCATCAATATCATGTAT-CTTAATGAGAAG
* * * * * ** *
3177002 ACTAAGTTTATGGTTCCTAAACCTGAAAGGAATAGGGATTAGTATGACCACTCATGTTTGTCTTA
192 ACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTTGTATGAGTATTCATGTTTGTCTTA
* * * * ** * *
3177067 TTTAATAGACAAACTTTTATTTTATCAAATACGTTGGAAAGTGAAGCTTTTCTTGCGGCACGAAA
257 TTTAAGAGACAAACTTTGATTCTATCAAAAACGTTGGAAAGAAAAGCTTTTCTTGCGACACCAAA
* * * * * * * *
3177132 GCATTAATATCATGTGTCCGAATGAAGGGATTGTGTTTTTGGTTCCCAATATTGAAAAGATTAGA
322 GCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAAATTGGA
* * * * * * * *
3177197 GACTATTAT-GAGAATTGAGGCCTGTCTTATTTAGGGGTTGAACTTTAATTTTAAGAAAAATAGG
387 GACTGTT-TCGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGG
* *
3177261 GCCAAGAAAAGATTTCCTTGCAAAA
451 GCAAAGAAAAGATTTCCATGCAAAA
* * * * * * * * *
3177286 GAAAATCATCAGTACCATTTATCCTAATGAAGAGAATATGTCTATAGTTCCAAATAAAAAAATGA
1 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
* * * * *
3177351 ATAAAGATCATTACTATAATCCAAGTTTGCCTCATTTGAGGCATGAACTTTA-ACTTTACAAAAA
66 ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAAC-TTAGACTTTACAAAAA
* * * * * * *
3177415 TTGGGGGGAAGAAAGCCTTTCTTGTGACACCAAAGCATCAATGTCGTGTATC-CATATGCA-AAG
130 TTGGTGGGAA-AAAGCCTTTCTAGCGAAACCAAAGCATCAATATCATGTATCTTA-ATG-AGAAG
* * * * *
3177478 ACTATGTTTATAGTGCCTATTACTGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTCTTA
192 ACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTTGTATGAGTATTCATGTTTGTCTTA
* * * * **** *
3177543 TTTAAGAGATATATTTTGATTCTATCAAAAACGGTGGAAAGAAAAAAAATT-TTGTGACACCAAA
257 TTTAAGAGACAAACTTTGATTCTATCAAAAACGTTGGAAAGAAAAGCTTTTCTTGCGACACCAAA
* * * *
3177607 GCATCAATGCCATGTATCCTAATGAAGGGAATGCGTTTTTGGCTCCCAATCTT-AAAAAGAATGG
322 GCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAA-ATTGG
* * * * **
3177671 AGACTGTTACGAGAATCGATGCTTATATTTTTTAAAAGATGAACTTTGATTTTAAGGAAAATAGG
386 AGACTGTTTCGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGG
* * * *
3177736 GGAAAGAAAGGATTTTCATACAAAA
451 GCAAAGAAAAGATTTCCATGCAAAA
* * *
3177761 GAAAATCATTATTATCATTTATTCTAA-GAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG
1 GAAAATCATCAATATCATTTATCCTAATG-AGGAGAATGTGTTTATAGTGCCTAATCACAAAATG
* * * * * *
3177825 AATAAAGATCATTACTAGAATCCAAGTTTGCCTCATTTGAGGCACAAACATAAACTTTACAAAAA
65 AATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAA
* * * ** * *
3177890 TTAGG-GGGAAGAAAGTCTTTCTTGCAAAACCAAAGCATCAATATTGTGTATCCTT-ATGTGAGG
130 TT-GGTGGGAA-AAAGCCTTTCTAGCGAAACCAAAGCATCAATATCATGTAT-CTTAATGAGAAG
3177953 ACTATGTT
192 ACTATGTT
3177961 AGTATAAATA
Statistics
Matches: 2137, Mismatches: 393, Indels: 96
0.81 0.15 0.04
Matches are distributed among these distances:
473 1 0.00
474 27 0.01
475 1288 0.60
476 424 0.20
477 386 0.18
478 11 0.01
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (475 bp):
GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAT
TGGTGGGAAAAAGCCTTTCTAGCGAAACCAAAGCATCAATATCATGTATCTTAATGAGAAGACTA
TGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTTGTATGAGTATTCATGTTTGTCTTATTTA
AGAGACAAACTTTGATTCTATCAAAAACGTTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAT
CAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAAATTGGAGACT
GTTTCGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAA
GAAAAGATTTCCATGCAAAA
Found at i:3181830 original size:17 final size:17
Alignment explanation
Indices: 3181808--3181842 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
3181798 TACTTGCGAC
3181808 ACCAAAGCATCAATGTT
1 ACCAAAGCATCAATGTT
3181825 ACCAAAGCATCAATGTT
1 ACCAAAGCATCAATGTT
3181842 A
1 A
3181843 GGCATCCTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.43, C:0.23, G:0.11, T:0.23
Consensus pattern (17 bp):
ACCAAAGCATCAATGTT
Found at i:3182729 original size:476 final size:474
Alignment explanation
Indices: 3179511--3182932 Score: 3397
Period size: 476 Copynumber: 7.2 Consensus size: 474
3179501 ATTGTGTTTT
* * * * * * *
3179511 TGGAGACTGTTACGAGAATTGA-GCCCTATCTTATTTAGGGGTTTAACTTTGATTTTAAGAAAAA
1 TGGAGACTGTTACGAGAATCGATG-CTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAA
* * * * *
3179575 TAGGGCAAG-GAA-A-TTCCTTGCAAAAGAAAATCATCAATATCTTTTATCCTAATGAGGAGAAC
65 TAGGGTAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
* * * * * *
3179637 GTGTCTATAGTGCCTAATCACAAAATGAATGAAGATCAGTACTATAGTCCAAGTTTGCCTCATTT
130 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT
* * * * *
3179702 GAGGCACGAACTTAAACTTTACAAAAATTGG-GGGAAAGAAAGCCTTTCTTGCGAAACCAAATCA
195 GAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAA-AAAGCCTTTATTAC-AAACCAAAGCA
** ** * * * * *
3179766 GGAATATTGTGTATCTTTATGCGAAGACTATGTTTATGGTGCCTATTCCTGAAAAGAATGGGGAT
258 TCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGAGGAT
* * * * ** *
3179831 TAGTATGACTATTCATGTTTGTCCTATTT-AGTAGACATACTTTGATTTTATTGAAAACGGTGGA
323 TTGTATGAGTATTCATGTTTGTCTTATTTAAG-AGACAAACTTTGATTTTATCAAAAACGTTGGA
* * * **
3179895 AAGAAAAACTTTTTTTGTGACACCAAAGCATCAATGTCATGTGTCCTAATGAAGCAAATGTGTTT
387 AAGAAAAGCTTTTTTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTT
*
3179960 TTGGTTCCCAATCTT-AAAAGAT
452 TTGGTTCCCAATCTTGAAAAGAA
* * * *
3179982 TGGAGATTGTTATGAGAATTGACGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT
1 TGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT
* * * * *
3180047 AGGGTGAGCAAAAGATTTCCATGCAAAAAAAAACCATCAATA-CATTTATCCTAATAAGGAGAAC
66 AGGGTAAG-AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
* * * * * *
3180111 GTGTTTATAGTACCTAATCGCAAAATGAGTGAGGATCATTACTAGAATCCGTGTATGTCTCATTT
130 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT
* ** *
3180176 GAGGCATGAACTTAGACTTCACAAAAATTTATGGG-AAAAAGCCTTT-TTAAGGAAACCAAAGCA
195 GAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTATT-A-CAAACCAAAGCA
* * * * *
3180239 TCAATATCATGTATCCTAATGAGAAGACAAGGTTTATGGTGCCTAATCATGAAAAGAACGGGGAT
258 TCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGAGGAT
* * * *
3180304 TTGTATAAGTATTCATGTTTGTATTATTTAAGAGACAAACTTTGATTCTATCAAAAATGTTGGAA
323 TTGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAACGTTGGAA
* * * * *
3180369 ACAAAAGCTTTTCTTGCGACGCCAAAGCATCATTGTCATGTATCCTAATGAAGGG-ATGGTTTTT
388 AGAAAAGCTTTTTTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAAT-GTGTTT
*
3180433 TTGGTTCTCAATCTTGAAAAGAA
452 TTGGTTCCCAATCTTGAAAAGAA
** ** * * *
3180456 TAAAGACTACTACGA-AAGTCGATGCTTGT-TTGATTTGAGGGATAAACTTTGATTTTAATGAAA
1 TGGAGACTGTTACGAGAA-TCGATGCTTGTCTT-ATTTAAGGGATGAACTTTGATTTTAAGGAAA
* * ** *
3180519 ATAGGGCTAAGAATAGATGTCCATGCAAGTGAAAATCATCAATATTATTTATCCTAATGAGGAGA
64 ATAGGG-TAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA
* * *
3180584 ATGTGTTTATAGTGCCTAATCACAAAATGAAGGAAGATCATTACTAGAATCCAAGTTTGCCTCAT
128 ATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCAT
* * * *
3180649 TTGAGGCATGAACTTAGACTTTAGAAAAATTGG-GCAGAAGAAAGCCTTTACTGT-GAAACCAAA
193 TTGAGGCATGAACTTAGACTTTACAAAAATTGGTG-GGAAAAAAGCCTTTA-T-TACAAACCAAA
* * ** * * *
3180712 GCATCAATATCATGTATCCTTATGCGAAGACTATGGCTACGGTGCCAAATCTTGAAAAGAAT-AG
255 GCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGA-
* * * * * * *
3180776 GGATTAGTATGACT-TGCCATGTTTGTATTATTTAAGAGAC--ATTTTGATTATATCAAAAACGA
319 GGATTTGTATGAGTAT-TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAACGT
* * * * *
3180838 TGGAAAGAAAAACTTTTTTTGCAACAACAAAGCATCAATGTCATCTATCCTAATGAAGGGATTGT
383 TGGAAAGAAAAGCTTTTTTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGT
* *
3180903 GTTTTTGGTTCCTAATCTGGAAAAGAA
448 GTTTTTGGTTCCCAATCTTGAAAAGAA
* * ** ** * * *
3180930 TGGCGACTATTGTGAGAATTAATGCTTGTCTT-TTTGAA-AGATAAACTTTTATTTTAAGGAAAA
1 TGGAGACTGTTACGAGAATCGATGCTTGTCTTATTT-AAGGGATGAACTTTGATTTTAAGGAAAA
* * * * * * * *
3180993 TAAGGTAAAGAAAA-TTTTCCATACAAAAGAAAATCATTAGTACCATTTATTCTAGTGAGGAGAA
65 TAGGGT-AAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
* * * ** * * * *
3181057 TGTGTTTATAGTACATAGTTGCAAAATGAATGACGATCAATATTAGAATCTATGTTTGTCTCATT
129 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATT
* * * * * *
3181122 TGAGGCAACGAAGTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTAACGAAACCAAGGT
194 TGAGGC-ATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTATTAC-AAACCAAAGC
* * * * * * * *
3181187 GTCAATATCATTTATGCTAATGAGAAAATTATGCTTATGGTGCATAATCCTGAAAAAGAATGGGG
257 ATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTG-AAAAGAATGAGG
* * * * * *
3181252 ATTAGTATAAGTATTCATATTTGTCTTATTTAAAAGGCAAACTTTGATTTTATTAAAAACAG-TG
321 ATTTGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAAC-GTTG
* ** * * * * * *
3181316 GAAAGAATGGAGAC-CGTTAT--G--A--GAA--ATGAATG---TGTATTCTAAAGAAAGGAATG
385 GAAAGAA--AAG-CTTTTTTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATG
*
3181369 TGTTTTTGGTTCCCATTCTTGAAAAGAA
447 TGTTTTTGGTTCCCAATCTTGAAAAGAA
** * * *
3181397 TGGAGACTGTTATC-AGAATCGACACTTGTCTTTTTTAAGAGATGAACTTTGGTTTTAAGGAAAA
1 TGGAGACTGTTA-CGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAA
** * * * * *
3181461 TAACGTAAAGAAAAGATTTTGCATGCAAAAAAAAAAT-ATTAATGTCATTTATCCTAATGAAGAG
65 TAGGGT-AAGAAAAGA-TTTCCATGC-AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAG
* * **
3181525 AATGTGATTATAGTGCCTAATCACAAAATGAATGTAGATTTTTACTAGAATCCATGTTTGTCTCA
127 AATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCA
* * * *
3181590 TTTCAGGCATGAACTTAAACTTTACAAAAATTGGTGGGAAAAAAAACCTTTCATGT-GAAACCAA
192 TTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGG-AAAAAAGCCTTT-AT-TACAAACCAA
* * * * **
3181654 AGCATCAATACCATGTATCCTAATCAGAAGGCTATGCTTATAATGCCTAATCCT-AAAATGAATG
254 AGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAA-GAATG
* * * * * * *
3181718 -GTGATTTGTATGAGTATTTATATTTTTCTTATTTGAGAGATAAACTTTGATTGTATCAAAAACA
318 AG-GATTTGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAACG
* **
3181782 TTGGAAAGAAATGCTTTACTTGCGACACCAAAGCATCAATGTTACCAAAGCATCAATGTTAGGCA
382 TTGGAAAGAAAAGCTTTTTTTGCGACACCAAAGCATCAA---T------G--TC-ATG-T----A
* * *
3181847 TCCTAATAAAGGGAATGTGTTTTTGGTTCCCAATCTTGAACAGAT
430 TCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAA
* * * *
3181892 TGGAAACTATTATGAGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT
1 TGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT
* * * * * *
3181957 AGGGCGAGGAAAAGATTTTCCATGCAAAAAAAAATCATTAGTATCATTTATCCTAATGAGAAGAA
66 AGGG-TAAGAAAAGA-TTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
* * * * *
3182022 AGTGTTTATAGTGCCTAATCAGAAAATGAATGAAGATTATTACTAGAATCCATGCTTATCTCATT
129 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATT
* * * * * * *
3182087 TGAGGCTTGAACATT-GACTTTACAAAAATTAGTGGGAAAATAGCCTTTCTTGCGAATCCAAAGT
194 TGAGGCATGAAC-TTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTATTAC-AAACCAAAGC
* * *
3182151 GTCAATATCATGTATCCCAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAAT-AGGG
257 ATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGA-GG
* * * *
3182215 ATTTGTATCAGTATTAATGTTTGTGTTATTTTAGAGACAAACTTTGATTTTATCAAAAACGTTGG
321 ATTTGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAACGTTGG
* ** * *
3182280 AAAGAAAAGCTTTTTTTGCGACATCC-AAGCATCATTGTCATGTATCCTCTTGAAGGGACTATGT
386 AAAGAAAAGCTTTTTTTGCGACA-CCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGT
*
3182344 TTTTGGTTCCCAAACTTGAAAAGAA
450 TTTTGGTTCCCAATCTTGAAAAGAA
* * * * * * * *
3182369 TAGAGACTGTGACAAGAATGGACGCTTTTCTTATTTAAGGGATGAACTTTTATTTTAAGGAAAAC
1 TGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT
* * * *
3182434 AGGGCTAAGAAAATATTTTCATGCAAGAGAAAATCATCAATATCATTTATCCTAATTAGGAGAAT
66 AGGG-TAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
* *
3182499 GTGTTTATAGTGCCTAATCACAAAACGAATGAAGATCATTACTAGAATCCATGTTTATCTCATTT
130 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT
* * * *
3182564 GAGGAACGAGCTTAGACTTAACAAAAATTGGTGGGAAAAAAGCCTTTATTACAAATCCAAAGCAT
195 GAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTATTACAAA-CCAAAGCAT
3182629 CAATATCATGTTAT-CTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGAGGAT
259 CAATATCATG-TATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGAGGAT
* * * * *
3182693 TTGTATGAGTATTGATGTTTTTCTTATTTCAGAGACAAACTTT-CTTTCTATCAAAAATGTTGGA
323 TTGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTT-TATCAAAAACGTTGGA
* * * * * **
3182757 AAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCTTGTATCCTAATGAATGGAATATGAGT
387 AAGAAAAGCTTTTTTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTT
* *
3182822 TTGATTCCCAATCTTGAAAAGAT
452 TTGGTTCCCAATCTTGAAAAGAA
* * * *
3182845 TGGAGAATGTTACGAGAATCTATGATTGTCTTATTTAAGGGATGAACTTCGATTTTAAGGAAAAT
1 TGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT
*
3182910 AAGGTTAAGAAAAGATTTCCATG
66 -AGGGTAAGAAAAGATTTCCATG
3182933 TGTTAAGATT
Statistics
Matches: 2404, Mismatches: 449, Indels: 191
0.79 0.15 0.06
Matches are distributed among these distances:
466 1 0.00
467 68 0.03
468 43 0.02
469 93 0.04
470 152 0.06
471 72 0.03
472 107 0.04
473 313 0.13
474 345 0.14
475 152 0.06
476 531 0.22
477 111 0.05
478 6 0.00
479 2 0.00
481 1 0.00
482 3 0.00
483 2 0.00
484 1 0.00
485 1 0.00
490 2 0.00
491 2 0.00
492 1 0.00
493 1 0.00
494 160 0.07
495 232 0.10
496 2 0.00
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (474 bp):
TGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT
AGGGTAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATG
TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG
AGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTATTACAAACCAAAGCATCA
ATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGAGGATTTG
TATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAACGTTGGAAAGA
AAAGCTTTTTTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGG
TTCCCAATCTTGAAAAGAA
Found at i:3183252 original size:19 final size:19
Alignment explanation
Indices: 3183228--3183270 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
3183218 AAATGTGTCA
3183228 ATACATATTGC-TTATATCG
1 ATACATATT-CTTTATATCG
* *
3183247 ATACATGTTCTTTGTATCG
1 ATACATATTCTTTATATCG
3183266 ATACA
1 ATACA
3183271 CCATAAAATG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 1 0.05
19 20 0.95
ACGTcount: A:0.30, C:0.16, G:0.12, T:0.42
Consensus pattern (19 bp):
ATACATATTCTTTATATCG
Found at i:3183891 original size:35 final size:36
Alignment explanation
Indices: 3183821--3183892 Score: 119
Period size: 36 Copynumber: 2.0 Consensus size: 36
3183811 CGAAGTGTTT
**
3183821 GAAAGGTTCTATCTTAGCCTTTGAAAAAGATAGGGA
1 GAAAGGTTCTATCTTAGCCCATGAAAAAGATAGGGA
3183857 GAAAGGTTCTATCTTAGCCCATG-AAAAGATAGGGA
1 GAAAGGTTCTATCTTAGCCCATGAAAAAGATAGGGA
3183892 G
1 G
3183893 GTTCTATTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
35 13 0.38
36 21 0.62
ACGTcount: A:0.36, C:0.12, G:0.26, T:0.25
Consensus pattern (36 bp):
GAAAGGTTCTATCTTAGCCCATGAAAAAGATAGGGA
Found at i:3183898 original size:31 final size:31
Alignment explanation
Indices: 3183824--3183949 Score: 128
Period size: 31 Copynumber: 3.9 Consensus size: 31
3183814 AGTGTTTGAA
*
3183824 AGGTTCTATCTTAGCCTTTGAAAAAGATAGGGAG
1 AGGTTCTATCTTAGCCTATG-AAAAGATA-GG-G
*
3183858 AAAGGTTCTATCTTAGCCCATGAAAAGATAGGG
1 --AGGTTCTATCTTAGCCTATGAAAAGATAGGG
* * * *
3183891 AGGTTCTATTTTAGCTTGTGAAAAGAGAGGG
1 AGGTTCTATCTTAGCCTATGAAAAGATAGGG
* *
3183922 AGGTTCTATTTTAGCCT-TCAAAAGATAG
1 AGGTTCTATCTTAGCCTATGAAAAGATAG
3183950 TGTTGTAAGG
Statistics
Matches: 80, Mismatches: 10, Indels: 6
0.83 0.10 0.06
Matches are distributed among these distances:
30 9 0.11
31 42 0.52
33 1 0.01
34 2 0.03
35 8 0.10
36 18 0.22
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (31 bp):
AGGTTCTATCTTAGCCTATGAAAAGATAGGG
Found at i:3185589 original size:21 final size:22
Alignment explanation
Indices: 3185565--3185613 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 22
3185555 GAACTAGAGG
3185565 AGAAAATG-AATGAGTTG-AAAA
1 AGAAAA-GAAATGAGTTGCAAAA
*
3185586 AGAAAAGAAATGAGTTGCAAGA
1 AGAAAAGAAATGAGTTGCAAAA
3185608 AGAAAA
1 AGAAAA
3185614 CGATGAATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
20 1 0.04
21 15 0.60
22 9 0.36
ACGTcount: A:0.59, C:0.02, G:0.24, T:0.14
Consensus pattern (22 bp):
AGAAAAGAAATGAGTTGCAAAA
Found at i:3188278 original size:13 final size:13
Alignment explanation
Indices: 3188260--3188284 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3188250 AATAGACCAG
3188260 CAGCTAGAGTCAA
1 CAGCTAGAGTCAA
3188273 CAGCTAGAGTCA
1 CAGCTAGAGTCA
3188285 CAAAACACTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.24, G:0.24, T:0.16
Consensus pattern (13 bp):
CAGCTAGAGTCAA
Found at i:3189476 original size:20 final size:20
Alignment explanation
Indices: 3189448--3189485 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
3189438 CAATGACTAT
*
3189448 AATTTTATCGATAAATTGTG
1 AATTATATCGATAAATTGTG
*
3189468 AATTATATCGATACATTG
1 AATTATATCGATAAATTG
3189486 AGCCCAATGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.08, G:0.13, T:0.42
Consensus pattern (20 bp):
AATTATATCGATAAATTGTG
Found at i:3190016 original size:34 final size:33
Alignment explanation
Indices: 3189921--3190052 Score: 121
Period size: 34 Copynumber: 3.9 Consensus size: 33
3189911 CGAAGTGATT
* *
3189921 AAGAGGTTTTATCTTAGCCTTTGAAAAATATAGCGAG
1 AAGAGGTTCTATCTTAGCC-TTG-AAAAGATAG-G-G
*
3189958 AA-AGATTCTATCTTCA-CCTGTGAAAAGATAGGG
1 AAGAGGTTCTATCTT-AGCCT-TGAAAAGATAGGG
*
3189991 AAGAGGTTTTATCTTAGCCTATGAAAAGATAGGG
1 AAGAGGTTCTATCTTAGCCT-TGAAAAGATAGGG
*
3190025 -AGA--TTCTATCTTAGCCTTCAAAAGATAG
1 AAGAGGTTCTATCTTAGCCTTGAAAAGATAG
3190053 TATTGTAAGG
Statistics
Matches: 83, Mismatches: 8, Indels: 15
0.78 0.08 0.14
Matches are distributed among these distances:
30 10 0.12
31 13 0.16
33 7 0.08
34 27 0.33
35 9 0.11
36 14 0.17
37 3 0.04
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.30
Consensus pattern (33 bp):
AAGAGGTTCTATCTTAGCCTTGAAAAGATAGGG
Found at i:3191215 original size:475 final size:474
Alignment explanation
Indices: 3190325--3205255 Score: 16036
Period size: 475 Copynumber: 31.4 Consensus size: 474
3190315 ATGTAAAAAG
*
3190325 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATTAATG
1 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
* ** * * *
3190390 AAGATTATTACTAGAATCCATGTTTACCTCATTTGAGGCATGAACTTAGACTTTACAAAAAATAG
66 AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG
* * * *
3190455 TGGGAAAAAGCCTTTCTTGTGAAACCAAAGCATCAACATCATGTATCCTAATGAGAAAATTATGT
131 TGGGAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGT
* * * *
3190520 TTATGGAGCCTAATCCCAAAAAGAATGGGGATTTGTATGAGTATTT-ATGTTTATCTTATTTGAA
196 TTATGGTGCCTAATCCTAAAAAGAATAGGGATTTGTATGAGT-TTTCATGTTTGTCTTATTT-AA
* * *
3190584 -AGACAAACTTTTATTCTAT-ACAAAACTTTGGAAAGAAAAGCTTTTCTTGAGACACCAAAGCAT
259 GAGACAAACTTTGATTCTATCA-AAAACGTTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCAT
* * * ** * **
3190647 CATTGTCATGTATCCTAATGAAGGTAATATGTTTTTATTTCTCAATCTTGAAAAGAATTAAGACT
323 CAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACT
* * * *
3190712 ATTATGAAAATCAAAGCTTGTCTTATTTAAGGGATGAACTTTGACTTTTAAGGAAAATAGGGCAA
388 GTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGA-TTTTAAGGAAAATAGGGCAA
*
3190777 AGAAAAGATTTTCACTTCAAA-AA
452 AGAAAAGATTTTCA-TGCAAAGAA
*
3190800 AATCATCAATATCATTTATCCT-ATGGAGGAGAATGTGTTTATAGTGCCTAAACACAAAATGAAT
1 AATCATCAATATCATTTATCCTAAT-GAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
* * * * * * * * *
3190864 GAAGATCAGTACTAGAATCAATGTTTATTTAATTTTAGGCACGAACTTAGATTTTACAAAACTTT
65 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTG
* * * * *
3190929 GTGGGAAAAAGCCTTTCTTGCAAAACCAAAACATCAATGTCAAGTATCCTAATGAGAATACTATG
130 GTGGGAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATG
* * * *
3190994 TTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTTGCATGAGTTTTCTTGTTTTTCTCT-TTTA
195 -TTTATGGTGCCTAATCCTAAAAAGAATAGGGATTTGTATGAGTTTTCATGTTTGTCT-TATTTA
* * * * *
3191058 AGAGACAAACTTTGATTCTATCAAGAACATTGGAAAGCAACA-CTTTTCTTGCGACAACAAAGCA
258 AGAGACAAACTTTGATTCTATCAAAAACGTTGGAAAG-AAAAGCTTTTCTTGTGACACCAAAGCA
** * *
3191122 TCAATGTCACATATCATAATGAA-AGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGAC
322 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGAC
* * * * * ** * * ***
3191186 TATTACGGGAATCAAAGCTTCCCTTATTTAAAGGATGAACTTTGATATTAAGGATTTTAGGGCAA
387 TGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAA
* *
3191251 AGAAAAAATTTCCATGCGAAAGAA
452 AGAAAAGATTTTCATGC-AAAGAA
* ** ** * * *
3191275 AATCATCAATATCATTTATCTTAATGACAAGAATGCATTTATAGTGCTTAATCACATAGTGAATG
1 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
** * * *
3191340 TGGATTATTACTAGAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTACAAAAATTGG
66 AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG
* * *
3191405 TGGGAAAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCATATATCCTAATGAGAAGATTATG
131 TGGG-AAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATG
* * * * * *
3191470 TTTATGGTGCCTAATCCAAAAAAGAAT-GGTGATTTGCAAGAGTTTTTATATTTGACTTATTTAA
195 TTTATGGTGCCTAATCCTAAAAAGAATAGG-GATTTGTATGAGTTTTCATGTTTGTCTTATTTAA
** * * * *
3191534 GAGACAAACTTTGATTCTATCAAAAATATTGGATAGAAATGCTTTTCTTGTGACACCAAAGTATT
259 GAGACAAACTTTGATTCTATCAAAAACGTTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATC
* * * * *
3191599 AATCTCATGTATCCTAATAAAGGAAATGTGTTTTTGGTTCCCAATCTTGAAAGGATTGGAGACTG
324 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTG
* * * * * *
3191664 TTATGAGAATTGATGCTTGTCTTATTTATGAGACGAACTTTGATTTTAAGGAAAATAAGGCAAAC
389 TTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
* *** *
3191729 AAAAAATTTTTGGGCAAATGGA
454 AAAAGATTTTCATGCAAA-GAA
* * * **
3191751 AATCGTTAGTATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATTGCAAAATGAATG
1 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
* * * *
3191816 AAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTACAAAATTTTG
66 AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG
* * * * * * *
3191881 TAGGG-AAAAGCCTTTCTTGAGAATCCAAGGCATCAATGTCGTGTGTCCCAATGAGAAGACTATG
131 T-GGGAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATG
* *
3191945 TTT-TGGTGCCTAATCTTAAAAAGAAT-GAGGATTTGTATGAGTATTCATGTTTGTCTTATTTAA
195 TTTATGGTGCCTAATCCTAAAAAGAATAG-GGATTTGTATGAGTTTTCATGTTTGTCTTATTTAA
* * * * * * * * * *
3192008 GACATAAAATTTGATTCTATGAAAGATGGTGGAAAGAAAAGCTTTTTTTGTGACACAAAAGCATT
259 GAGACAAACTTTGATTCTATCAAAAACGTTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATC
* ** * * * *
3192073 AATGTCATGTATCCTGATGAACAGAATGTGTTTTTCGTTCCCAATCATGAAAAAAAATGAAGACT
324 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTG-AAAAGAATGGAGACT
* *
3192138 ATTATGAGAATCGATGCTTGTCTTATTT-AGGAGATGAACTTTGATATTAAGGAAAATAGGGCAA
388 GTTATGAGAATCGATGCTTGTCTTATTTAAGG-GATGAACTTTGATTTTAAGGAAAATAGGGCAA
3192202 AGAAAAGATTTTCACATG-AAAGAA
452 AGAAAAGATTTT--CATGCAAAGAA
* * * * *
3192226 AATCATCAATATCATTTATCCTATTGAGAAGAATGTGTTTATAGTGCATAAACACAAAATGGATG
1 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
* * * * * *
3192291 AAGATTAGTACTAGAATCCATGTTGGTCTTATTTAAGGCACGAACTTAGACTTTACAAAAATTTA
66 AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAA-TTG
* * *
3192356 G-GGGAAAAAGCCTTTCTTGTGAAACCAAAGCTTCAATATCATGTATCCTAATAAGAAGACTATG
130 GTGGGAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATG
* * * *
3192420 TTTATGGTGCCTAATCCTAAAATGAATAGGGATTTGTATGAGTTTTCGTGTTTTTCTCATTTAA-
195 TTTATGGTGCCTAATCCTAAAAAGAATAGGGATTTGTATGAGTTTTCATGTTTGTCTTATTTAAG
* * * * * * *
3192484 AGGACAAACTTTGATTCT-TCCAAGAATGTTGTAAATAAAAGCTTTTATTGCGACACCAAAGTAT
260 A-GACAAACTTTGATTCTAT-CAAAAACGTTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCAT
** * *
3192548 CAATGTCACCTATCCTAATGAAGGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATTGAGACT
323 CAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACT
* ** * * * * *
3192613 ATTACAAGAATCGAAGCTTATCTTATTTAAGGGAAGAACTTTGATTTTAAGGAAACTAGGGCCAA
388 GTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAA
* *
3192678 GAAAAGATTTCCATGTAAAAGAA
453 GAAAAGATTTTCATG-CAAAGAA
* *
3192701 AATTATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAACACAAAATGAATG
1 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
* ** * * * * * *
3192766 AAGATCAGTACTCCAATCTAGGTTTGTCTAATTTGAGGCACAAACTTAGAATTTACAAAAATTTG
66 AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG
** * *
3192831 TGGGAAAAAGCCTTTCTTGTAAAACCAAAGCATCAATATCGTGTATCTTAATGAGAAGACTATGT
131 TGGGAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATG-
* * * **
3192896 TTTATGGTTCCTAATCTTATAAAGAATAGGGATTTGTATGAGTTTTCATGCTTT-TCCCATTTAA
195 TTTATGGTGCCTAATCCTAAAAAGAATAGGGATTTGTATGAGTTTTCATG-TTTGTCTTATTTAA
* * ** *
3192960 GAGACCAACTTTGATTCTATCAAAAACGTTAGAAAGAAAAGCTTTTCTTGCAATACCAAAGCATC
259 GAGACAAACTTTGATTCTATCAAAAACGTTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATC
* *
3193025 AATGTCAAGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAAATCCTGAAAAGAATGGAGACT
324 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCC-AATCTTGAAAAGAATGGAGACT
* * ** * *
3193090 TTTACGAGAATCGATGCTTGTCTTATTTAAGCAATGCACTTTGATTTTAAAGAAAATAGGGCAAA
388 GTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAA
3193155 GAAAAGATTTTCATGCAAAAGAA
453 GAAAAGATTTTCATGC-AAAGAA
* * *
3193178 AATCATCAATATCATTTATACTAGTGAGGAGAATGTGTTTATAGTGCCTAAACACAAAATGAATG
1 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
** * * * * * * *
3193243 AAGATCAGCATTACAATCCAGGTTTGTCTAAATTGAGGCACGAACTTAGAATTTACAAAAATTTG
66 AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG
* *
3193308 TGGGAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAAACAATGT
131 TGGGAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGT
* * * * *
3193373 TTATGTTGTCTAATCCTGAAAAGAATGGGGATTTGTATGAGTATTCATGTTTGTCTTATTTAAGA
196 TTATGGTGCCTAATCCTAAAAAGAATAGGGATTTGTATGAGTTTTCATGTTTGTCTTATTTAAGA
* * * * **
3193438 GACAAACTTTGATTCTATGAAAAACGGTGGAAAGAAAAGGTTATCTTGTGACATAAAAGCATCAA
261 GACAAACTTTGATTCTATCAAAAACGTTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAA
* * * * * * * *
3193503 TGTCTTGCATCCTAATGAAAGGAATGCGTTTTTGGTTCCCAATCATAAAAAAAATGGAGACTGCT
326 TGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTT
* * * * * * * *
3193568 ATGACAATCGATGCTTGCCTTTTTTAAGGGACGAATTTTGACTTTAAAGAAAATAGGGCAAAAAA
391 ATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAA
* *
3193633 AAGATTTCCATGCGAAAGAT
456 AAGATTTTCATGC-AAAGAA
* *
3193653 AATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTT-TAGTGCCTAAACA-AAAATGAATG
1 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
* ** ** * * * * ** * *
3193716 AAGATTAGGACTAGAATCGGTGCTTGTTTAATTTGAGGC-CTAAAAATAGACTTTACTAAAATTT
66 AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAC-GAACTTAGACTTTACAAAAATTG
* * * *
3193780 ATGGGAAAAAGCCATTCTTGCGAAACCAAAGCATCGATATCATGTATCCTAATGAGAATACTATG
130 GTGGGAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATG
* * * ** *
3193845 TTTTATGGTGCCTAATCCAAAAAAGAATAGGGATTTGTATGAGTTTTAATGTTTTTCTCCTTTAG
195 -TTTATGGTGCCTAATCCTAAAAAGAATAGGGATTTGTATGAGTTTTCATGTTTGTCTTATTTAA
* * * * *
3193910 GAGATAAACTTTGATTTTATC-AAGACTGTTGGAAAGAAAAGCTTTTCTTGCGACAACAAAGCAT
259 GAGACAAACTTTGATTCTATCAAAAAC-GTTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCAT
* * *
3193974 CAATGTCATATATTCTAACGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACT
323 CAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACT
* * ** * * *
3194039 TTTATGAGAATCGAAGCTTGTCTTATTTAACAGATAAACTTTGGTTTTAAGGAAATTAGGGCAAA
388 GTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAA
* *
3194104 GAAAATATTTCCATGCAAATGAA
453 GAAAAGATTTTCATGCAAA-GAA
* * * * * *
3194127 TATCATCAATATC-TTTTTCCCTAATGAAGAGAATGTGTTCATAGT-CTCTTATCAAAAAATGAA
1 AATCATCAATATCATTTAT-CCTAATGAGGAGAATGTGTTTATAGTGC-CTAATCACAAAATGAA
* * * * *
3194190 TGAAGAT-ATTTTCTAGAATCCATGTTTGTCTAATTTTAGGTACGAACTTAGACTTTCCAAAAAT
64 TGAAGATCA-TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAT
** * * *
3194254 TGGCAGGAGAAAAGCCTTTCTTGTGAAACCAAAGCATCAATTTCATGTATCCTAATGAGAAAACT
128 TGGTGGGA-AAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACT
*
3194319 -TGTTTATGGTGCCTAATACTAGAAAA-AATAGGGATTTGTATGAGTATTT-ATGTTTGTCTTAT
192 ATGTTTATGGTGCCTAATCCTA-AAAAGAATAGGGATTTGTATGAGT-TTTCATGTTTGTCTTAT
* * * * * * ** **
3194381 TTAGGAGACAAACTTTAATTCTATGAAAAATGGTGAAAAAGGTAAGCTTTT-TTGTGACATAAAA
255 TTAAGAGACAAACTTTGATTCTATCAAAAACGTTG-GAAAGAAAAGCTTTTCTTGTGACACCAAA
* *
3194445 GCATTAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTTTGTTCCCAATCTTGAAAAGAAT-G
319 GCATCAATGTCATGTATCCTAATGAAGGGAATGTG-TTTTTGGTTCCCAATCTTGAAAAGAATGG
* ** * **
3194509 AGACTATTATGATTATCGATGCTTGTCTTACTTAAGGGATGAAGGTTGATTTTAAGGAAAATAGG
383 AGACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGG
*
3194574 G-AAA-AAATGATTTTCATGCGAAAGAA
448 GCAAAGAAAAGATTTTCATGC-AAAGAA
* * * *
3194600 AATCATTAATATCATTTATCCT-ATTATGGAGAATGTGTTTATAGTGCCTAAGCATAAAATGAAT
1 AATCATCAATATCATTTATCCTAATGA-GGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
* * * * *
3194664 GAAGATTAGTACTAGAATCAATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTT
65 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTG
* * * * * *
3194729 GTAGGAAAAAGCCTTTCTTACGAACCCGAAGCATCAATATAATGTATCCTAATGAGAAGACAATG
130 GTGGGAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATG
* * * * * *
3194794 TTTTTGGTGCCTAAACATGAAAAGAAT-GAGGATTTGTTTGAGTATTCATGTTTGTCTTATTTAA
195 TTTATGGTGCCTAATCCTAAAAAGAATAG-GGATTTGTATGAGTTTTCATGTTTGTCTTATTTAA
* * * * *
3194858 GAGACAAACATTT-TTTCTATCAAAAATGTTGGAAAGAAAAGCTTTTCTTGCGATACCAAGGCAT
259 GAGACAAAC-TTTGATTCTATCAAAAACGTTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCAT
* * *
3194922 CAATGTCATGCATCCTAATAAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAGAA-AATGGTGAC
323 CAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAA-AAGAATGGAGAC
* * * * * * * *
3194986 TGTTACT-AGATTTGAAGCTTGTCTTTTTTAAAGGATGAAATTTGAATTTAAGGAAATTAGGGCA
387 TGTTA-TGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCA
* *
3195050 AAGAAAAGATTTCCATGGAAAAGAA
451 AAGAAAAGATTTTCAT-GCAAAGAA
** * *
3195075 AATCATCAATATCATTTATCCTAAAAAGGAGAATGTGTTTATAGTGCCTAAACACAAAATAAATG
1 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
* * ** * *** * *
3195140 AAGATCAGTACTAGTATTAATATTTGTCTCATTTGAGGCTTAAACTTAGAATTTACAAAAATTTG
66 AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG
* * * * *
3195205 TAGGAAAAAACCTTTCTTACGAAACCAAAGCATCAATATCATGTATCCTAATG-GAAAGGCTGTG
131 TGGGAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAG-AAGACTATG
* ** * * * * * * *
3195269 TTTTTCTTACCTCAT-CTAAAGAAAAAAAAAAGGGATTTGTATGAGTTTTCATATTTTTCTCATT
195 TTTATGGTGCCTAATCCT----AAAAAGAATAGGGATTTGTATGAGTTTTCATGTTTGTCTTATT
* * * * *
3195333 TAAGAGACAAACTTTGTTTCTATAAAAAATGTTGGAAAAAAAAGCATTTCTTGTGACACCAAAGC
256 TAAGAGACAAACTTTGATTCTATCAAAAACGTTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGC
* * *
3195398 ATTAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTAGTTCCCAATCTTGAAAAGAATTGAGA
321 ATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGA
* * * * * * *
3195463 CTGTTATGAGAATTGAAGCTTGTCTTATTTACGAGATGAACTTTTATTTTAAAGAAAATAGGGTA
386 CTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCA
* *
3195528 AAGAAAAGATTTTAATGTAAAAGAA
451 AAGAAAAGATTTTCATG-CAAAGAA
* * * * * * *
3195553 AATCATTAGTATTATTTATCCTAATGAGAAGAATGGGTTTATAGTGCCTAATAACAAAATGAATA
1 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
** ** * *
3195618 AAGATCATTACTAGAATCCATGTTTAACTCATTTGACACACGAACTTAGACTTTAGAAGAATTGG
66 AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG
* * * *
3195683 GGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATG
131 TGGGAA-AAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATG
* *
3195748 TTTATGGTGCCT-ATCCT-AAAAGAATACGGATTTGTATGAGCATTT-ATGTTTGTCTTATTTAA
195 TTTATGGTGCCTAATCCTAAAAAGAATAGGGATTTGTATGAG-TTTTCATGTTTGTCTTATTTAA
* * * ** * ** * *
3195810 GTA-ATAAACTTTGATTCTAT--GAAA-GATGG-TGGAACATTTTTTTTTGTGACACAAAAGCAT
259 G-AGACAAACTTTGATTCTATCAAAAACGTTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCAT
* * * *
3195870 CAATGTAATGTATCCTAAAGAAGGGAATATGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGGCT
323 CAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACT
* * * *
3195935 GTTATGAGAATCGATGCTTGTCTTATTTTAGAGATGAACTTTTATTTTAAAGAAAATTA-GGCAA
388 GTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAA-TAGGGCAA
* * *
3195999 AGGAAAGA-TTTCTACGCGAATGAA
452 AGAAAAGATTTTC-ATGC-AAAGAA
* *
3196023 AATCATCAATATCATTTATCCTAATGAAGG-GAATATGTTTGTAGTGCCTAATCACAAAATGAAT
1 AATCATCAATATCATTTATCCTAATG-AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
* * * *
3196087 GAGGATCATTACAAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCTAAAATTG
65 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTG
* * * * * *
3196152 GTGGGAAAATAGCCCTTCTTGCGAAACCAAAGCATCAATCTCTTTTATCCTAATTAGAAAACTAT
130 GTGGGAAAA-AGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTAT
* * * *
3196217 GTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGAGTATTCACGTTTGTCTTATTTAA
194 GTTTATGGTGCCTAATCCTAAAAAGAATAGGGATTTGTATGAGTTTTCATGTTTGTCTTATTTAA
* * ** ** * * *
3196282 AAGGCAAACTTTGATTCTATCAAACGCGGCGGAAAGAAAAGCTTTTTTTATGACACCATAGCATC
259 GAGACAAACTTTGATTCTATCAAAAACGTTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATC
* * * *
3196347 AATGTCATGTATCCTAAAGAAGGG-ATGTGCTTTTGGTTCTCAATCTTGAAAAGAATGGAGACAG
324 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTG
* * * * *
3196411 TTATGAGAATCAATTG-TTGTCTTTTTTAAGGGATGAACTTTGAATGTAAGGAAAACAGGGCAAA
389 TTATGAGAATCGA-TGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAA
** *
3196475 GAAAAGATTACCACGCTAAA-AA
453 GAAAAGATTTTCATGC-AAAGAA
* * * *
3196497 AATCATTAATATCATTTATCATAATGAGGAGAATGTGTTTATTGTGCCTAATCTCAAAATGCAA-
1 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG-AAT
* * * * *
3196561 GAAGATTATTACTAGAATCCTTGTTTGTCTCATTTGAGGCATGAACTTAGATTTTACAAATATTG
65 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTG
* * ** * * *
3196626 GTCGGAAAAAAGCTCTTT-TTGCAAAACCAAAGTGTTAATATCATGTATTCTAATGAGACGACTA
130 GT-GGGAAAAAGC-CTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTA
* * * * * * * *
3196690 TGTTTATAGTACCTAATCCTAAAAAGAATTGTGATTCGTATGAGTATTT-ATATTTTTCTTACTT
193 TGTTTATGGTGCCTAATCCTAAAAAGAATAGGGATTTGTATGAGT-TTTCATGTTTGTCTTATTT
* *
3196754 AAGAGACAAACTTTGATTCTACCAAAAACGTTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
257 AAGAGACAAACTTTGATTCTATCAAAAACGTTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCA
* * * *
3196819 TCAATGTCATGTATTCTAATGAAGGGACTGTGTTTTTAGTTCCAAATCTTGAAAAGAATGGAGAC
322 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGAC
* * * * * * *
3196884 CGCTATGAGAA-CTAATGCTTGTCATATTTAAGGGATGAACTTTGATTTTAAAGAAAATATGACA
387 TGTTATGAGAATC-GATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCA
* *
3196948 AAGAAAAGATTTCCATGTAAAAGAA
451 AAGAAAAGATTTTCATG-CAAAGAA
* ** *
3196973 AATCATCAGTATCATTTATCCTAAAAAGGAGATTGTGTTTATAGTGCCTAATCACAAAATGAATG
1 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
* * * * * *
3197038 AAGAACATTACTAGAATCTATGTTTGGCTCATTTGACGCACGAACTTACATTTTACAAAAATTGG
66 AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG
* * * *
3197103 GGGAGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAACATCATATATCCTTATGAGAAGACTAT
131 TGG-GAA-AAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTAT
* * ** *
3197168 GTTTATGGTGCTTAATCCT-AAAAGAAT-GGAGATTTGTATGACTACTCATCTTTGTCTTATTTA
194 GTTTATGGTGCCTAATCCTAAAAAGAATAGG-GATTTGTATGAGTTTTCATGTTTGTCTTATTTA
* * * ** * ** *
3197231 AGGGAGAAACTTTGAGTCTAAAAAAAATGAGGGAATA-AAAAGCTTTTTTTGTGACACCAAAGCA
258 AGAGACAAACTTTGATTCTATCAAAAACGTTGGAA-AGAAAAGCTTTTCTTGTGACACCAAAGCA
* * * * * *
3197295 TCAATGTCATGTATCCTAATAAAGAGAATGGGATTTTGGTTCCTAATCTTGAAAGGAATGGAGAC
322 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGAC
* * * * * ** * *
3197360 TGTTACGAGATTTGATGCTTGTCCTATTTAAGGGATAAACTTTGATTTTAAGGAAAGCAAGGCAG
387 TGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAA
*
3197425 AGAAAAGATTTTCATGCGAAAGAT
452 AGAAAAGATTTTCATGC-AAAGAA
* *
3197449 AATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTT-TAGTGCCTAAACA-AAAATGAATG
1 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
* ** ** * * ** *
3197512 AAGATTAGGACTAGAATCGGTGCTTGT-TGAATTTGAGGC-CTGAAAATAGACTTTACTAAAATT
66 AAGATCATTACTAGAATCCATGTTTGTCT-CATTTGAGGCAC-GAACTTAGACTTTACAAAAATT
** * * *
3197575 TATGGGAAAAAGCCATTCTTGCGAAACCAAAGCATCGATATCATGTATCCTAATGAGAATACTAT
129 GGTGGGAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTAT
* * * **
3197640 GTTTTATGGTGCCTAATCCAAAAAAGAATAGGGATTTGTATGAGTTTTAATGTTTTTCTCCTTTA
194 G-TTTATGGTGCCTAATCCTAAAAAGAATAGGGATTTGTATGAGTTTTCATGTTTGTCTTATTTA
* * * * * *
3197705 GGAGATAAACTTTGATTTTATC-AAGACTGTTGGAAAGAAAAGCTTTTCTTGCGACAACAAAGCA
258 AGAGACAAACTTTGATTCTATCAAAAAC-GTTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCA
* * *
3197769 TCAATGTCATATATTCTAACGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGAC
322 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGAC
* * ** * * *
3197834 TTTTATGAGAATCGAAGCTTGTCTTATTTAACAGATAAACTTTGGTTTTAAGGAAATTAGGGCAA
387 TGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAA
* *
3197899 AGAAAATATTTCCATGCAAATGAA
452 AGAAAAGATTTTCATGCAAA-GAA
* * * * * *
3197923 TATCATCAATATC-TTTTTCCCTAATGAAGAGAATGTGTTCATAGT-CTCTTATCAAAAAATGAA
1 AATCATCAATATCATTTAT-CCTAATGAGGAGAATGTGTTTATAGTGC-CTAATCACAAAATGAA
* * * * *
3197986 TGAAGAT-ATTTTCTAGAATCCATGTTTGTCTAATTTTAGGTACGAACTTAGACTTTCCAAAAAT
64 TGAAGATCA-TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAT
** * * *
3198050 TGGCAGGAGAAAAGCCTTTCTTGTGAAACCAAAGCATCAATTTCATGTATCCTAATGAGAAAACT
128 TGGTGGGA-AAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACT
*
3198115 -TGTTTATGGTGCCTAATACTAGAAAA-AATAGGGATTTGTATGAGTATTT-ATGTTTGTCTTAT
192 ATGTTTATGGTGCCTAATCCTA-AAAAGAATAGGGATTTGTATGAGT-TTTCATGTTTGTCTTAT
* * * * * ** **
3198177 TTAGGAGACAAACTTTAATTCTATGAAAAACGGTGAAAAAGGTAAGCTTTT-TTGTGACATAAAA
255 TTAAGAGACAAACTTTGATTCTATCAAAAACGTTG-GAAAGAAAAGCTTTTCTTGTGACACCAAA
* * *
3198241 GCATTAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTTTGTTCCCAATCTTGAAAAGAATAG
319 GCATCAATGTCATGTATCCTAATGAAGGGAATGTG-TTTTTGGTTCCCAATCTTGAAAAGAATGG
* ** * **
3198306 AGACTATTATGATTATCGATGCTTGTCTTACTTAAGGGATGAAGGTTGATTTTAAGGAAAATAGG
383 AGACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGG
*
3198371 G-AAA-AAATGATTTTCATGCGAAAGAA
448 GCAAAGAAAAGATTTTCATGC-AAAGAA
* * * *
3198397 AATCATTAATATCATTTATCCT-ATTATGGAGAATGTGTTTATAGTGCCTAAGCATAAAATGAAT
1 AATCATCAATATCATTTATCCTAATGA-GGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
* * * * *
3198461 GAAGATTAGTACTAGAATCAATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTT
65 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTG
* * * * * *
3198526 GTAGGAAAAAGCCTTTCTTACGAACCCGAAGCATCAATATAATGTATCCTAATGAGAAGACAATG
130 GTGGGAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATG
* * * * * *
3198591 TTTTTGGTGCCTAAACATGAAAAGAAT-GAGGATTTGTTTGAGTATTCATGTTTGTCTTATTTAA
195 TTTATGGTGCCTAATCCTAAAAAGAATAG-GGATTTGTATGAGTTTTCATGTTTGTCTTATTTAA
* * * * *
3198655 GAGACAAACGTTT-TTTCTATCAAAAATGTTGGAAAGAAAAGCTTTTCTTGCGATACCAAGGCAT
259 GAGACAAAC-TTTGATTCTATCAAAAACGTTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCAT
* * *
3198719 CAATGTCATGCATCCTAATAAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAGAA-AATGGTGAC
323 CAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAA-AAGAATGGAGAC
* * * * * * * *
3198783 TGTTACT-AGATTTGAAGCTTGTCTTTTTTAAAGGATGAAATTTGAATTTAAGGAAATTAGGGCA
387 TGTTA-TGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCA
* * *
3198847 GAGAAAAGATTTCCATGGAAAAGAA
451 AAGAAAAGATTTTCAT-GCAAAGAA
** * *
3198872 AATCATCAATATCATTTATCCTAAAAAGGAGAATGTGTTTATAGTGCCTAAACACAAAATAAATG
1 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
* * ** * *** * *
3198937 AAGATCAGTACTAGTATTAATATTTGTCTCATTTGAGGCTTAAACTTAGAATTTACAAAAATTTG
66 AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG
* * * * *
3199002 TAGGAAAAAACCTTTCTTACGAAACCAAAGCATCAATATCATGTATCCTAATG-GAAAGGCTGTG
131 TGGGAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAG-AAGACTATG
* ** * * * * * * * *
3199066 TTTTTCTTACCTCAT-CTAAAGAAAAAAAAAAGGATTTGTATGAGTTTTCATATTTTTCTCATTT
195 TTTATGGTGCCTAATCCT--A-AAAAGAATAGGGATTTGTATGAGTTTTCATGTTTGTCTTATTT
* * * * *
3199130 AAGAGACAAACTTTGTTTCTATAAAAAATGTTGGAAAAAAAAGCATTTCTTGTGACACCAAAGCA
257 AAGAGACAAACTTTGATTCTATCAAAAACGTTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCA
* * *
3199195 TTAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTAGTTCCCAATCTTGAAAAGAATTGAGAC
322 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGAC
* * * * * * *
3199260 TGTTATGAGAATTGAAGCTTGTCTTATTTACGAGATGAACTTTTATTTTAAAGAAAATAGGGTAA
387 TGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAA
* *
3199325 AGAAAAGATTTTAATGTAAAAGAA
452 AGAAAAGATTTTCATG-CAAAGAA
* * * * * * *
3199349 AATCATTAGTATTATTTATCCTAATGAGAAGAATGGGTTTATAGTGCCTAATAACAAAATGAATA
1 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
** ** * *
3199414 AAGATCATTACTAGAATCCATGTTTAACTCATTTGACACACGAACTTAGACTTTAGAAGAATTGG
66 AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG
* * * *
3199479 GGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATG
131 TGGGAA-AAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATG
* *
3199544 TTTATGGTGCCT-ATCCTAAAAAGAATACGGATTTGTATGAGCATTT-ATGTTTGTCTTATTTAA
195 TTTATGGTGCCTAATCCTAAAAAGAATAGGGATTTGTATGAG-TTTTCATGTTTGTCTTATTTAA
* * * ** * ** * *
3199607 GTA-ATAAACTTTGATTCTAT--GAAA-GATGG-TGGAACATTTTTTTTTGTGACACAAAAGCAT
259 G-AGACAAACTTTGATTCTATCAAAAACGTTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCAT
* * * *
3199667 CAATGTAATGTATCCTAAAGAAGGGAATATGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGGCT
323 CAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACT
* * * *
3199732 GTTATGAGAATCGATGCTTGTCTTATTTTAGAGATGAACTTTTATTTTAAAGAAAATTA-GGCAA
388 GTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAA-TAGGGCAA
* * *
3199796 AGGAAAGA-TTTCTACGCGAATGAA
452 AGAAAAGATTTTC-ATGC-AAAGAA
* *
3199820 AATCATCAATATCATTTATCCTAATGAAGG-GAATATGTTTGTAGTGCCTAATCACAAAATGAAT
1 AATCATCAATATCATTTATCCTAATG-AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
* * * *
3199884 GAGGATCATTACAAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCTAAAATTG
65 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTG
* * * * * *
3199949 GTGGGAAAATAGCCCTTCTTGCGAAACCAAAGCATCAATCTCTTTTATCCTAATTAGAAAACTAT
130 GTGGGAAAA-AGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTAT
* * * *
3200014 GTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGAGTATTCACGTTTGTCTTATTTAA
194 GTTTATGGTGCCTAATCCTAAAAAGAATAGGGATTTGTATGAGTTTTCATGTTTGTCTTATTTAA
* * ** ** * * *
3200079 AAGGCAAACTTTGATTCTATCAAACGCGGCGGAAAGAAAAGCTTTTTTTATGACACCATAGCATC
259 GAGACAAACTTTGATTCTATCAAAAACGTTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATC
* * * *
3200144 AATGTCATGTATCCTAAAGAAGGG-ATGTGCTTTTGGTTCTCAATCTTGAAAAGAATGGAGACAG
324 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTG
* * * * *
3200208 TTATGAGAATCAATTG-TTGTCTTTTTTAAGGGATGAACTTTGAATGTAAGGAAAACAGGGCAAA
389 TTATGAGAATCGA-TGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAA
** *
3200272 GAAAAGATTACCACGCTAAA-AA
453 GAAAAGATTTTCATGC-AAAGAA
* * * *
3200294 AATCATTAATATCATTTATCATAATGAGGAGAATGTGTTTATTGTGCCTAATCTCAAAATGCAA-
1 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG-AAT
* * * * *
3200358 GAAGATTATTACTAGAATCCTTGTTTGTCTCATTTGAGGCATGAACTTAGATTTTACAAATATTG
65 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTG
* * ** * * *
3200423 GTCGGAAAAAAGCTCTTT-TTGCAAAACCAAAGTGTTAATATCATGTATTCTAATGAGACGACTA
130 GT-GGGAAAAAGC-CTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTA
* * * * * * * *
3200487 TGTTTATAGTACCTAATCCTAAAAAGAATTGTGATTCGTATGAGTATTT-ATATTTTTCTTACTT
193 TGTTTATGGTGCCTAATCCTAAAAAGAATAGGGATTTGTATGAGT-TTTCATGTTTGTCTTATTT
* *
3200551 AAGAGACAAACTTTGATTCTACCAAAAACGTTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
257 AAGAGACAAACTTTGATTCTATCAAAAACGTTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCA
* * * *
3200616 TCAATGTCATGTATTCTAATGAAGGGACTGTGTTTTTAGTTCCAAATCTTGAAAAGAATGGAGAC
322 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGAC
* * * * * * *
3200681 CGCTATGAGAA-CTAATGCTTGTCATATTTAAGGGATGAACTTTGATTTTAAAGAAAATATGACA
387 TGTTATGAGAATC-GATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCA
* *
3200745 AAGAAAAGATTTCCATGTAAAAGAA
451 AAGAAAAGATTTTCATG-CAAAGAA
* ** *
3200770 AATCATCAGTATCATTTATCCTAAAAAGGAGATTGTGTTTATAGTGCCTAATCACAAAATGAATG
1 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
* * * * * *
3200835 AAGAACATTACTAGAATCTATGTTTGGCTCATTTGACGCACGAACTTACATTTTACAAAAATTGG
66 AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG
* * * *
3200900 GGGAGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAACATCATATATCCTTATGAGAAGACTAT
131 TGG-GAA-AAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTAT
* * ** *
3200965 GTTTATGGTGCTTAATCCT-AAAAGAAT-GGAGATTTGTATGACTACTCATCTTTGTCTTATTTA
194 GTTTATGGTGCCTAATCCTAAAAAGAATAGG-GATTTGTATGAGTTTTCATGTTTGTCTTATTTA
* * * ** * ** *
3201028 AGGGAGAAACTTTGAGTCTAAAAAAAATGAGGGAATA-AAAAGCTTTTTTTGTGACACCAAAGCA
258 AGAGACAAACTTTGATTCTATCAAAAACGTTGGAA-AGAAAAGCTTTTCTTGTGACACCAAAGCA
* * * * * *
3201092 TCAATGTCATGTATCCTAATAAAGAGAATGGGATTTTGGTTCCTAATCTTGAAAGGAATGGAGAC
322 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGAC
* * * * * ** * *
3201157 TGTTACGAGATTTGATGCTTGTCCTATTTAAGGGATAAACTTTGATTTTAAGGAAAGCAAGGCAG
387 TGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAA
*
3201222 AGAAAAGATTTTCATGCGAAAGAT
452 AGAAAAGATTTTCATGC-AAAGAA
* *
3201246 AATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTT-TAGTGCCTAAACA-AAAATGAATG
1 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
* ** ** * * ** *
3201309 AAGATTAGGACTAGAATCGGTGCTTGT-TGAATTTGAGGC-CTGAAAATAGACTTTACTAAAATT
66 AAGATCATTACTAGAATCCATGTTTGTCT-CATTTGAGGCAC-GAACTTAGACTTTACAAAAATT
** * * *
3201372 TATGGGAAAAAGCCATTCTTGCGAAACCAAAGCATCGATATCATGTATCCTAATGAGAATACTAT
129 GGTGGGAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTAT
* * * **
3201437 GTTTTATGGTGCCTAATCCAAAAAAGAATAGGGATTTGTATGAGTTTTAATGTTTTTCTCCTTTA
194 G-TTTATGGTGCCTAATCCTAAAAAGAATAGGGATTTGTATGAGTTTTCATGTTTGTCTTATTTA
* * * * * *
3201502 GGAGATAAACTTTGATTTTATC-AAGACTGTTGGAAAGAAAAGCTTTTCTTGCGACAACAAAGCA
258 AGAGACAAACTTTGATTCTATCAAAAAC-GTTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCA
* * *
3201566 TCAATGTCATATATTCTAACGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGAC
322 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGAC
* * ** * * *
3201631 TTTTATGAGAATCGAAGCTTGTCTTATTTAACAGATAAACTTTGGTTTTAAGGAAATTAGGGCAA
387 TGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAA
* *
3201696 AGAAAATATTTCCATGCAAATGAA
452 AGAAAAGATTTTCATGCAAA-GAA
* * * * * *
3201720 TATCATCAATATC-TTTTTCCCTAATGAAGAGAATGTGTTCATAGT-CTCTTATCAAAAAATGAA
1 AATCATCAATATCATTTAT-CCTAATGAGGAGAATGTGTTTATAGTGC-CTAATCACAAAATGAA
* * * * *
3201783 TGAAGAT-ATTTTCTAGAATCCATGTTTGTCTAATTTTAGGTACGAACTTAGACTTTCCAAAAAT
64 TGAAGATCA-TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAT
** * * *
3201847 TGGCAGGAGAAAAGCCTTTCTTGTGAAACCAAAGCATCAATTTCATGTATCCTAATGAGAAAACT
128 TGGTGGGA-AAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACT
*
3201912 -TGTTTATGGTGCCTAATACTAGAAAA-AATAGGGATTTGTATGAGTATTT-ATGTTTGTCTTAT
192 ATGTTTATGGTGCCTAATCCTA-AAAAGAATAGGGATTTGTATGAGT-TTTCATGTTTGTCTTAT
* * * * * ** **
3201974 TTAGGAGACAAACTTTAATTCTATGAAAAACGGTGAAAAAGGTAAGCTTTT-TTGTGACATAAAA
255 TTAAGAGACAAACTTTGATTCTATCAAAAACGTTG-GAAAGAAAAGCTTTTCTTGTGACACCAAA
* * * *
3202038 GCATTAATGTCATGTACCCTAATGAAGGGAATGTGTTTTTCTGTTCCCAATCTTGAAAAGAATAG
319 GCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTT-GGTTCCCAATCTTGAAAAGAATGG
* ** * **
3202103 AGACTATTATGATTATCGATGCTTGTCTTACTTAAGGGATGAAGGTTGATTTTAAGGAAAATAGG
383 AGACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGG
*
3202168 G-AAA-AAATGATTTTCATGCGAAAGAA
448 GCAAAGAAAAGATTTTCATGC-AAAGAA
* * * *
3202194 AATCATTAATATCATTTATCCT-ATTATGGAGAATGTGTTTATAGTGCCTAAGCATAAAATGAAT
1 AATCATCAATATCATTTATCCTAATGA-GGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
* * * * *
3202258 GAAGATTAGTACTAGAATCAATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTT
65 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTG
* * * * * *
3202323 GTAGGAAAAAGCCTTTCTTACGAACCCGAAGCATCAATATAATGTATCCTAATGAGAAGACAATG
130 GTGGGAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATG
* * * * * *
3202388 TTTTTGGTGCCTAAACATGAAAAGAAT-GAGGATTTGTTTGAGTATTCATGTTTGTCTTATTTAA
195 TTTATGGTGCCTAATCCTAAAAAGAATAG-GGATTTGTATGAGTTTTCATGTTTGTCTTATTTAA
* * * * *
3202452 GAGACAAACGTTT-TTTCTATCAAAAATGTTGGAAAGAAAAGCTTTTCTTGCGATACCAAGGCAT
259 GAGACAAAC-TTTGATTCTATCAAAAACGTTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCAT
* * *
3202516 CAATGTCATGCATCCTAATAAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAGAA-AATGGTGAC
323 CAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAA-AAGAATGGAGAC
* * * * * * * *
3202580 TGTTACT-AGATTTGAAGCTTGTCTTTTTTAAAGGATGAAATTTGAATTTAAGGAAATTAGGGCA
387 TGTTA-TGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCA
* *
3202644 AAGAAAAGATTTCCATGGAAAAGAA
451 AAGAAAAGATTTTCAT-GCAAAGAA
** * *
3202669 AATCATCAATATCATTTATCCTAAAAAGGAGAATGTGTTTATAGTGCCTAAACACAAAATAAATG
1 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
* * ** * *** * *
3202734 AAGATCAGTACTAGTATTAATATTTGTCTCATTTGAGGCTTAAACTTAGAATTTACAAAAATTTG
66 AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG
* * * * *
3202799 TAGGAAAAAACCTTTCTTACGAAACCAAAGCATCAATATCATGTATCCTAATG-GAAAGGCTGTG
131 TGGGAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAG-AAGACTATG
* ** * * * * * * *
3202863 TTTTTCTTACCTCAT-CTAAAGAAAAAAAAAAGGGATTTGTATGAGTTTTCATATTTTTCTCATT
195 TTTATGGTGCCTAATCCT----AAAAAGAATAGGGATTTGTATGAGTTTTCATGTTTGTCTTATT
* * * * *
3202927 TAAGAGACAAACTTTGTTTCTATAAAAAATGTTGGAAAAAAAAGCATTTCTTGTGACACCAAAGC
256 TAAGAGACAAACTTTGATTCTATCAAAAACGTTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGC
* * *
3202992 ATTAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTAGTTCCCAATCTTGAAAAGAATTGAGA
321 ATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGA
* * * * * *
3203057 CTGTTATGAGAATTGAAGCTTGTCTTATTTACGGGATGAACTTTTATTTTAAAGAAAATAGGGTA
386 CTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCA
* *
3203122 AAGAAAAGATTTTAATGTAAAAGAA
451 AAGAAAAGATTTTCATG-CAAAGAA
* * * * * * *
3203147 AATCATTAGTATTATTTATCCTAATGAGAAGAATGGGTTTATAGTGCCTAATAACAAAATGAATA
1 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
** ** * *
3203212 AAGATCATTACTAGAATCCATGTTTAACTCATTTGACACACGAACTTAGACTTTAGAAGAATTGG
66 AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG
* * * *
3203277 GGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATG
131 TGGGAA-AAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATG
* *
3203342 TTTATGGTGCCT-ATCCTAAAAAGAATACGGATTTGTATGAGCATTT-ATGTTTGTCTTATTTAA
195 TTTATGGTGCCTAATCCTAAAAAGAATAGGGATTTGTATGAG-TTTTCATGTTTGTCTTATTTAA
* * * ** * ** * *
3203405 GTA-ATAAACTTTGATTCTAT--GAAA-GATGG-TGGAACATTTTTTTTTGTGACACAAAAGCAT
259 G-AGACAAACTTTGATTCTATCAAAAACGTTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCAT
* * * *
3203465 CAATGTAATGTATCCTAAAGAAGGGAATATGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGGCT
323 CAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACT
* * * *
3203530 GTTATGAGAATCGATGCTTGTCTTATTTTAGAGATGAACTTTTATTTTAAAGAAAATTA-GGCAA
388 GTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAA-TAGGGCAA
* * *
3203594 AGGAAAGA-TTTCTACGCGAATGAA
452 AGAAAAGATTTTC-ATGC-AAAGAA
* *
3203618 AATCATCAATATCATTTATCCTAATGAAGG-GAATATGTTTGTAGTGCCTAATCACAAAATGAAT
1 AATCATCAATATCATTTATCCTAATG-AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
* * * *
3203682 GAGGATCATTACAAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTGCTAAAATTG
65 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTG
* * * * * *
3203747 GTGGGAAAATAGCCCTTCTTGCGAAACCAAAGCATCAATCTCTTTTATCCTAATTAGAAAACTAT
130 GTGGGAAAA-AGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTAT
* * * * *
3203812 GTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGTGTATTCACGTTTGTCTTATTTAA
194 GTTTATGGTGCCTAATCCTAAAAAGAATAGGGATTTGTATGAGTTTTCATGTTTGTCTTATTTAA
* * * ** ** * * *
3203877 AAGGCAAACTTTGATTCTATCCAATGCGGCGGAAAGAAAAGCTTTTTTTATGACACCATAGCATC
259 GAGACAAACTTTGATTCTATCAAAAACGTTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATC
* * * *
3203942 AATGTCATGTATCCTAAAGAAGGG-ATGTGCTTTTGGTTCTCAATCTTGAAAAGAATGGAGACAG
324 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTG
* * * * *
3204006 TTATGAGAATCAATTG-TTGTCTTTTTTAAGGGATGAACTTTGAATGTAAGGAAAACAGGGCAAA
389 TTATGAGAATCGA-TGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAA
** *
3204070 GAAAAGATTACCACGCTAAA-AA
453 GAAAAGATTTTCATGC-AAAGAA
* * * *
3204092 AATCATTAATATCATTTATCATAATGAGGAGAATGTGTTTATTGTGCCTAATCTCAAAATGCAA-
1 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG-AAT
* * * * *
3204156 GAAGATTATTACTAGAATCCTTGTTTGTCTCATTTGAGGCATGAACTTAGATTTTACAAATATTG
65 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTG
* * ** * * *
3204221 GTCGGAAAAAAAGCTCTTT-TTGCAAAACCAAAGTGTTAATATCATGTATTCTAATGAGACGACT
130 GT-GG-GAAAAAGC-CTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACT
* * * * * * * *
3204285 ATGTTTATAGTACCTAATCCTAAAAAGAATTGTGATTCGTATGAGTATTT-ATATTTTTCTTACT
192 ATGTTTATGGTGCCTAATCCTAAAAAGAATAGGGATTTGTATGAGT-TTTCATGTTTGTCTTATT
* *
3204349 TAAGAGACAAACTTTGATTCTACCAAAAACGTTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC
256 TAAGAGACAAACTTTGATTCTATCAAAAACGTTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGC
* * * *
3204414 ATCAATGTCATGTATTCTAATGAAGGGACTGTGTTTTTAGTTCCAAATCTTGAAAAGAATGGAGA
321 ATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGA
* * * * * * *
3204479 CCGCTATGAGAA-CTAATGCTTGTCATATTTAAGGGATGAACTTTGATTTTAAAGAAAATAAGAC
386 CTGTTATGAGAATC-GATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGC
* *
3204543 AAAGAAAAGATTTCCATGTAAAAGAA
450 AAAGAAAAGATTTTCATG-CAAAGAA
* ** *
3204569 AATCATCAGTATCATTTATCCTAAAAAGGAGATTGTGTTTATAGTGCCTAATCACAAAATGAATG
1 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
* * * * * *
3204634 AAGAACATTACTAGAATCTATGTTTGGCTCATTTGACGCACGAACTTACATTTTACAAAAATTGG
66 AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG
* * * *
3204699 GGGAGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAACATCATATATCCTTATGAGAAGACTAT
131 TGG-GAA-AAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTAT
* * ** *
3204764 GTTTATGGTGCTTAATCCT-AAAAGAAT-GGAGATTTGTATGACTACTCATCTTTGTCTTATTTA
194 GTTTATGGTGCCTAATCCTAAAAAGAATAGG-GATTTGTATGAGTTTTCATGTTTGTCTTATTTA
* * * ** * ** *
3204827 AGGGAGAAACTTTGAGTCTAAAAAAAATGAGGGAATA-AAAAGCTTTTTTTGTGACACCAAAGCA
258 AGAGACAAACTTTGATTCTATCAAAAACGTTGGAA-AGAAAAGCTTTTCTTGTGACACCAAAGCA
* * * * * *
3204891 TCAATGTCATGTATCCTAATAAAGAGAATGGGATTTTGGTTCCTAATCTTGAAAGGAATGGAGAC
322 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGAC
* * * * * ** * *
3204956 TGTTACGAGATTTGATGCTTGTCCTATTTAAGGGATAAACTTTGATTTTAAGGAAAGCAAGGCAG
387 TGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAA
3205021 AGAAAAGATTTTCATGCGAAAGAA
452 AGAAAAGATTTTCATGC-AAAGAA
* * * *
3205045 AATCATCAATATCATTTATCCTAATGAGGAGAATGTATTTATATTGCCTAATCGCAAAAAGAATG
1 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
* * * *
3205110 AAAATTATTACTAGAATCCATTTTTGTCTCATTTGGGGCACGAACTTAGACTTTACAAAAATTGG
66 AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG
* * * * * * * *
3205175 TTAGCAAAAAGCCTTTCTTGTGAAACTAAAGCATCGATGTCATGTACCCTAATGAAGAGGA-TAT
131 -TGGGAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG-AGAAGACTAT
* *
3205239 GTTTTTGGTTCCTAATC
194 GTTTATGGTGCCTAATC
3205256 TTGAAAAAAT
Statistics
Matches: 12044, Mismatches: 2114, Indels: 596
0.82 0.14 0.04
Matches are distributed among these distances:
469 5 0.00
470 333 0.03
471 667 0.06
472 382 0.03
473 779 0.06
474 2259 0.19
475 3100 0.26
476 2606 0.22
477 1078 0.09
478 712 0.06
479 121 0.01
480 2 0.00
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.33
Consensus pattern (474 bp):
AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG
TGGGAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGT
TTATGGTGCCTAATCCTAAAAAGAATAGGGATTTGTATGAGTTTTCATGTTTGTCTTATTTAAGA
GACAAACTTTGATTCTATCAAAAACGTTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAA
TGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTT
ATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAA
AAGATTTTCATGCAAAGAA
Found at i:3205437 original size:315 final size:313
Alignment explanation
Indices: 3204863--3205556 Score: 828
Period size: 315 Copynumber: 2.2 Consensus size: 313
3204853 ATGAGGGAAT
* * * * ** *
3204863 AAAAAGCTTTTTTTGTGACACCAAAGCATCAATGTCATGTATCCTAATAAAGAGAATGGGATTTT
1 AAAAAGC-CTTTTTGTGAAACCAAAGCATCAATGTCATGTATCCTAATGAAGAGGATATGTTTTT
* * * * ** *
3204928 GGTTCCTAATCTTGAAAGGAATGGAGACTGTTACGAGATTTGATGCTTGTCCTATTTAAGGGATA
65 GGTTCCTAATCTTGAAAGAAATGGAGACTATTACGAGAATCGATGCTAATCCTATTTAA-GAATA
* *
3204993 AACTTTGATTTTAAGGAAAGCAAGGCAGAGAAAAGATTTTCATGCGAAAGAAAATCATCAATATC
129 AACTTTGATTTTAAGGAAAACAAGGCAAAGAAAAGA-TTTCATGCGAAAGAAAATCATCAATATC
* * *
3205058 ATTTATCCTAATGAGGAGAATGTATTTATATTGCCTAATCGCAAAAAGAATGAAAATTATTACTA
193 ATTTATCCTAATGAGGAGAAAGTATTTATAGTGCCTAATCGCAAAAAGAATGAAAATCATTACTA
*
3205123 GAATCCAT-TTT-TGTCTCATTTGGGGCACGAACTTAGACTTTACAAAAATTGGTTAGC
258 GAATCCATGTTTATGT-T-ATTTGAGGCACGAACTTAGACTTTACAAAAATTGG-TAGC
* * *
3205180 AAAAAGCCTTTCTTGTGAAACTAAAGCATCGATGTCATGTACCCTAATGAAGAGGATATGTTTTT
1 AAAAAGCCTTT-TTGTGAAACCAAAGCATCAATGTCATGTATCCTAATGAAGAGGATATGTTTTT
* *
3205245 GGTTCCTAATCTTGAAA-AAATTGGAGACTATTTCGAGAATCGATGCTAATCTTATTTACA-AAT
65 GGTTCCTAATCTTGAAAGAAA-TGGAGACTATTACGAGAATCGATGCTAATCCTATTTA-AGAAT
* * *
3205308 AAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGA-TTC-TGCGCAAAAGAAAATCATCAGTA
128 AAACTTTGATTTTAAGGAAAACAAGGCAAAGAAAAGATTTCATGCG--AAAGAAAATCATCAATA
* * *
3205371 TCATTT-TCCCTAATGAGGAGAAAGTGTTTATAGTGCCTAATCGCAAAAAGAATTAAGATCATTA
191 TCATTTAT-CCTAATGAGGAGAAAGTATTTATAGTGCCTAATCGCAAAAAGAATGAAAATCATTA
** * * * *
3205435 CTAGAATCCATGTTTATGTTATTTGAGGTGCGAACTTAGACTTTTCAAAAATTTGTGGG
255 CTAGAATCCATGTTTATGTTATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTAGC
* ** * *
3205494 AAAAAGCCCTTAGGATGAAACCAAAGCATCAATATCATGTATCCTAATG-AGAAGACTATGTTT
1 AAAAAGCCTTTTTG-TGAAACCAAAGCATCAATGTCATGTATCCTAATGAAGAGGA-TATGTTT
3205557 ATGGAGCCTA
Statistics
Matches: 322, Mismatches: 45, Indels: 23
0.83 0.12 0.06
Matches are distributed among these distances:
313 10 0.03
314 53 0.16
315 113 0.35
316 44 0.14
317 101 0.31
318 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (313 bp):
AAAAAGCCTTTTTGTGAAACCAAAGCATCAATGTCATGTATCCTAATGAAGAGGATATGTTTTTG
GTTCCTAATCTTGAAAGAAATGGAGACTATTACGAGAATCGATGCTAATCCTATTTAAGAATAAA
CTTTGATTTTAAGGAAAACAAGGCAAAGAAAAGATTTCATGCGAAAGAAAATCATCAATATCATT
TATCCTAATGAGGAGAAAGTATTTATAGTGCCTAATCGCAAAAAGAATGAAAATCATTACTAGAA
TCCATGTTTATGTTATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTAGC
Found at i:3205627 original size:315 final size:315
Alignment explanation
Indices: 3204877--3205633 Score: 750
Period size: 315 Copynumber: 2.4 Consensus size: 315
3204867 AGCTTTTTTT
* * * * **
3204877 GTGACACCAAAGCATCAATGTCATGTATCCTAATAAAG-AGA-ATGGGATTT-TGGTTCCTAATC
1 GTGAAACCAAAGCATCAATATCATGTACCCTAATGAAGAAGATAT--G-TTTATGGAGCCTAATC
** ** * * * * * * *
3204939 TTGAAAGGAATGGAGACTGTTACGAGATTTGATGCTTGTCCTATTTAAGGGATAAACTTTGATTT
63 TACAAAAAAATGGAGACTATTTCAAGAATCGATGCTTGTCTTATTT-AGAGATAAACTTTGATTT
* *
3205004 TAAGGAAAGCAAGGCAGAGAAAAGATTTTCATGCGAAAGAAAATCATCAATATCATTTATCCTAA
127 TAAGGAAAACAAGGCAAAGAAAAGA-TTTCATGCGAAAGAAAATCATCAATATCATTTATCCTAA
* * *
3205069 TGAGGAGAATGTATTTATATTGCCTAATCGCAAAAAGAATGAAAATTATTACTAGAATCCATTTT
191 TGAGGAGAAAGTATTTATAGTGCCTAATCGCAAAAAGAATGAAAATCATTACTAGAATCCATTTT
* * **
3205134 TGTCTCATTTGGGGCACGAACTTAGACTTTACAAAAATTGGTTAGCAAAAAGCCTTTCTT
256 TGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTTAGCAAAAAGCCCTTCAG
* * * * * ** **
3205194 GTGAAACTAAAGCATCGATGTCATGTACCCTAATGAAGAGGATATGTTTTTGGTTCCTAATCTTG
1 GTGAAACCAAAGCATCAATATCATGTACCCTAATGAAGAAGATATGTTTATGGAGCCTAATCTAC
* * ** * *
3205259 AAAAAATTGGAGACTATTTCGAGAATCGATGCTAATCTTATTTACAAATAAACTTTGATTTTAAG
66 AAAAAAATGGAGACTATTTCAAGAATCGATGCTTGTCTTATTTAGAGATAAACTTTGATTTTAAG
* * *
3205324 GAAAATAGGGCAAAGAAAAGA-TTC-TGCGCAAAAGAAAATCATCAGTATCATTT-TCCCTAATG
131 GAAAACAAGGCAAAGAAAAGATTTCATGCG--AAAGAAAATCATCAATATCATTTAT-CCTAATG
* * *
3205386 AGGAGAAAGTGTTTATAGTGCCTAATCGCAAAAAGAATTAAGATCATTACTAGAATCCATGTTTA
193 AGGAGAAAGTATTTATAGTGCCTAATCGCAAAAAGAATGAAAATCATTACTAGAATCCAT-TTT-
** * * * *
3205451 TGT-T-ATTTGAGGTGCGAACTTAGACTTTTCAAAAATTTG-TGGGAAAAAGCCCTT-AG
256 TGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTTAGCAAAAAGCCCTTCAG
*
3205507 GATGAAACCAAAGCATCAATATCATGTATCCTAATG-AGAAGACTATGTTTATGGAGCCTAATC-
1 G-TGAAACCAAAGCATCAATATCATGTACCCTAATGAAGAAGA-TATGTTTATGGAGCCTAATCT
* * * *
3205570 ACAAAAAGAATGGAGA-TTTTTATAAGTATTC-ATGTTTGTCTTATTTGAGAGATAAACTTTGAT
64 ACAAAAA-AATGGAGACTATTT-CAAG-AATCGATGCTTGTCTTATTT-AGAGATAAACTTTGAT
3205633 T
125 T
3205634 CGATTAGAAA
Statistics
Matches: 366, Mismatches: 60, Indels: 30
0.80 0.13 0.07
Matches are distributed among these distances:
313 19 0.05
314 84 0.23
315 131 0.36
316 43 0.12
317 85 0.23
318 2 0.01
319 2 0.01
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (315 bp):
GTGAAACCAAAGCATCAATATCATGTACCCTAATGAAGAAGATATGTTTATGGAGCCTAATCTAC
AAAAAAATGGAGACTATTTCAAGAATCGATGCTTGTCTTATTTAGAGATAAACTTTGATTTTAAG
GAAAACAAGGCAAAGAAAAGATTTCATGCGAAAGAAAATCATCAATATCATTTATCCTAATGAGG
AGAAAGTATTTATAGTGCCTAATCGCAAAAAGAATGAAAATCATTACTAGAATCCATTTTTGTCT
CATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTTAGCAAAAAGCCCTTCAG
Found at i:3205948 original size:476 final size:470
Alignment explanation
Indices: 3205202--3207300 Score: 2180
Period size: 476 Copynumber: 4.4 Consensus size: 470
3205192 TTGTGAAACT
* * *
3205202 AAAGCATCGATGTCATGTACCCTAATGAAGAGGATATG--TTTTTGGTTCCTAATCTTGAAAA-A
1 AAAGCATCAATGTCATGTATCCTAATAAAG-GGA-ATGTATTTTTGGTTCC-AATCTTGAAAAGA
* ** *
3205264 ATTGGAGACTATT-TCGAGAATCGATGCTAATCTTATTTACA--AATAAACTTTGATTTTAAGGA
63 A-TGGAGACTGTTAT-GAGAATCGATGCTTGTCTTATTTA-AGGAATGAACTTTGATTTTAAGGA
* * *
3205326 AAATAGGGCAAAGAAAAGATTCTGC--GCAAAAGAAAATCATCAGTATCATTT-TCCCTAATGAG
125 AAATAGGGCAAAGAAAAGATT-TCCATGCAAAAAAAAATCATCAGTATCATTTAT-CCTAATGAA
* * * * *
3205388 GAGAAAGTGTTTATAGTGCCTAATCGCAAAAAGAATTAAGATCATTACTAGAATCCATGTTTATG
188 GAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT-GG
* * * *
3205453 TTATTTGAGGTGC-GAACTTAGACTTTTCAAAAATTTGTGGGAAAAAGCCCTTAGGATGAAACCA
252 TCATTTGA-G-GCAGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGCCCTTAGGACGAAACCA
*
3205517 AAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGG-AGCCTAATCAC-AAAAAGAA
315 AAGCATCAACATCATGTATCCTAATGAGAAGACTATGTTTATGGTA-CCTAATC-CTAAAAAGAA
* * * * * * *
3205580 TGGAGATTTTTATAAGTATTCATGTTTGTCTTATTTGAGAGATAAACTTTGATTCGATTAGAAAC
378 TGG-GATTTGTATGAGTATTCATGTTTGTCTTATTT-AGAGACAAACTTTGATTCTATCAAAAAT
** * *
3205645 GTTGGAAAGAAAAG-TTTTTCTTATGATACC
441 GGGGGAAAGAAAAGCTTTTT-TTACGACACC
*** * * * * *
3205675 AAAATGTCACTGTCATGTATCCTAATGAAGGGACTATATTTTTGGGTTCCAATCTTGAAAATAAT
1 AAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTATTTTT-GGTTCCAATCTTGAAAAGAAT
**
3205740 GGAGACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGTTGAACTTTGATTTTAAGGAAAATA
65 GGAGACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAATA
** * * *
3205805 GGATAAAGAAAAGATTTCCATGCAAAAAAAAAATGATTATTATCATTTATCCTAATGAAGAGAAT
130 GGGCAAAGAAAAGATTTCCATGC-AAAAAAAAATCATCAGTATCATTTATCCTAATGAAGAGAAT
*
3205870 GTGTTTATAGTGCCTAATCACAAAATGAAT-AATGATCATTACTAGAATCCATGTTTGGCTTATT
194 GTGTTTATAGTGCCTAATCACAAAATGAATGAA-GATCATTACTAGAATCCATGTTTGG-TCATT
* * * * ** *
3205934 TGATGCATGAACTTAGATTTTAAAAAAATTAGG-GGGAAGAAAGCCTTTCTTG-CAAAACCAAAG
257 TGAGGCA-GAACTTAGACTTTACAAAAATT-GGTGGGAA-AAAGCCCTT-AGGACGAAACCAAAG
* * * * * *
3205997 CATCAACATCGTGTATCCTTATAAGAAGACTATGTTTATGGTGCTTAATCCTGAAAAGAATGGGG
318 CATCAACATCATGTATCCTAATGAGAAGACTATGTTTATGGTACCTAATCCTAAAAAGAAT-GGG
* * * * * *
3206062 ATTTGTATGACTACTCATCTTTGTCTTATTTAGGGGAGAAACTTTGAATCTATCAAAAATGGGGG
382 ATTTGTATGAGTATTCATGTTTGTCTTATTTA-GAGACAAACTTTGATTCTATCAAAAATGGGGG
*
3206127 AAAGAAAAGCTTTTTTTGCGACACC
446 AAAGAAAAGCTTTTTTTACGACACC
* * * * * *
3206152 AAAGCATCAATATCATGTATCCTAATTAAGAGAATGGTA-TTTTGTTTCCTAATCTTGAAAGGAG
1 AAAGCATCAATGTCATGTATCCTAATAAAGGGAAT-GTATTTTTGGTTCC-AATCTTGAAAAGAA
* * * * * * * **
3206216 TAGAGACTGTTACGAGATTTGATGCTTGTCCTATTTAAGGGATAAACTTTGATTTTAAGGAAGGT
64 TGGAGACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAAT
* * * * * * *
3206281 AGGGCAGAGAAAAGATTTCAATTCAAAAGAAAATCATCAATATCATTTA-CTCTAGTGAGGAGAA
129 AGGGCAAAGAAAAGATTTCCATGCAAAAAAAAATCATCAGTATCATTTATC-CTAATGAAGAGAA
* * ** *
3206345 TGTGTTTATACTGCTTAATCACAAAATGAATGAAGATTTTTATTAGAATCCATGTTTGTGTCATT
193 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG-GTCATT
* * * * * **
3206410 GGAGGCGGGAACTTCGAATTTACGAAAATTGGTGGGAAAGAAGCCCTTCTTG-CGAAACCAAAGC
257 TGAGGC-AGAACTTAGACTTTACAAAAATTGGTGGGAAA-AAGCCCTT-AGGACGAAACCAAAGC
* * * * * * *
3206474 ATTAGCATCTTTTATCCTAATGAGAAGACTAT-TTTCTGGTACCTAACCCTAAAAAGAATGGGGT
319 ATCAACATCATGTATCCTAATGAGAAGACTATGTTTATGGTACCTAATCCTAAAAAGAATGGGAT
* * **
3206538 TAGTATGAGTATTCATGTTTGTCTTATTTTAGAGACAAATTTTGATTCTATCAAAAATGGTAGAA
384 TTGTATGAGTATTCATGTTTGTCTTA-TTTAGAGACAAACTTTGATTCTATCAAAAATGGGGGAA
3206603 AGAAAAGCTTTTTTTACGACACC
448 AGAAAAGCTTTTTTTACGACACC
* * * * *
3206626 AAAGCATCAATGTCATGTATCCTAAAAAAGGGAATGTATTATTGGTTCATAATTTTGAAAAGAGT
1 AAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTATTTTTGGTTC-CAATCTTGAAAAGAAT
* * * * *
3206691 GGAGACTATTACGAAAATCGATGCTTGTCTTATTTAAGGCATGAACTTTGGTTTTAAGGAAAATA
65 GGAGACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAATA
* ** * * *
3206756 GGGCAAAGAAAATATTTCTGTGC-AAAAGAAATAATCAATATCATTTATCCTAAT-AAGGAGAAT
130 GGGCAAAGAAAAGATTTCCATGCAAAAAAAAATCATCAGTATCATTTATCCTAATGAA-GAGAAT
* * * *
3206819 GTGTTTATAGTGCTTAATCACAAAATGAATGAAGATTATTACTACAATCCA-ATTTGGTCTCATT
194 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGG--TCATT
* ** *
3206883 TGAGGCACGAACTTAGACTTTACAAAAATTGGTTGGCAAAAAG-CCTTACTTACGAAACTAAAGC
257 TGAGGCA-GAACTTAGACTTTACAAAAATTGG-TGGGAAAAAGCCCTTA-GGACGAAACCAAAGC
* * * *
3206947 AGCAATATCATGTATCCTAATGAGAAGACTATGCTTATGGTACCTAATCCTAAAAAGAAAGGTGA
319 ATCAACATCATGTATCCTAATGAGAAGACTATGTTTATGGTACCTAATCCTAAAAAGAATGG-GA
* * * * *
3207012 TTTGCATGAGTATTTATATTTGTCTTATTTAAGAAACAAACTTTGATTCTATTAAAAATGGGGGA
383 TTTGTATGAGTATTCATGTTTGTCTTATTT-AGAGACAAACTTTGATTCTATCAAAAATGGGGGA
* * *
3207077 AAGAAAAGCTTATCTTGCGACACC
447 AAGAAAAGCTTTTTTTACGACACC
*
3207101 AAAGCATCAATGTCATGAATCCTAATAAAGGGAATGTA-TTTTGGCTTCCCAATCTTGAAAAGAA
1 AAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTATTTTTGG-TT-CCAATCTTGAAAAGAA
** * * *
3207165 TACAGACTGTTATGGGAATCTATGCTTGTCTTATTTAAGGAATGAACTTTAATTTTAAGGAAAAT
64 TGGAGACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAAT
* * * *
3207230 AGGGCCAAGAAAAGATTTTCATGCAAACAAAAATCATCAGTACCATTTATCCTAAT-AAGCAGAA
129 AGGGCAAAGAAAAGATTTCCATGCAAAAAAAAATCATCAGTATCATTTATCCTAATGAAG-AGAA
3207294 TGTGTTT
193 TGTGTTT
3207301 GTTAGGATCT
Statistics
Matches: 1353, Mismatches: 224, Indels: 95
0.81 0.13 0.06
Matches are distributed among these distances:
471 2 0.00
472 14 0.01
473 226 0.17
474 287 0.21
475 234 0.17
476 324 0.24
477 256 0.19
478 10 0.01
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (470 bp):
AAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTATTTTTGGTTCCAATCTTGAAAAGAATG
GAGACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAATAG
GGCAAAGAAAAGATTTCCATGCAAAAAAAAATCATCAGTATCATTTATCCTAATGAAGAGAATGT
GTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGGTCATTTGAG
GCAGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGCCCTTAGGACGAAACCAAAGCATCAACA
TCATGTATCCTAATGAGAAGACTATGTTTATGGTACCTAATCCTAAAAAGAATGGGATTTGTATG
AGTATTCATGTTTGTCTTATTTAGAGACAAACTTTGATTCTATCAAAAATGGGGGAAAGAAAAGC
TTTTTTTACGACACC
Found at i:3206093 original size:791 final size:789
Alignment explanation
Indices: 3204517--3206053 Score: 1835
Period size: 791 Copynumber: 1.9 Consensus size: 789
3204507 TTAAGGGATG
*
3204517 AACTTTGATTTTAAAGAAAATAAGACAAAGAAAAGATTTCCATGTAAAAGAAAATCATCAGTATC
1 AACTTTGATTTTAAAGAAAATAAGACAAAGAAAAGATTTCCA-GCAAAAGAAAATCATCAGTATC
** *
3204582 ATTTATCCTAAAAAGGAGATTGTGTTTATAGTGCCTAATCACAAAATGAATGAAGAACATTACTA
65 ATTTATCCTAAAAAGGAGAAAGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGAACATTACTA
*
3204647 GAATCTATGTTTGGCTCATTTGACGCACGAACTTACATTTTACAAAAATTGGGGGAGAAGAAAGC
130 GAATCCATGTTTGGCTCATTTGACGCACGAACTTACATTTTACAAAAATTGGGGGAGAAGAAAGC
* ** * * *
3204712 CTTTCTTGCGAAACCAAAGCATCAACATCATATATCCTTATGAGAAGACTATGTTTATGGTGCTT
195 CCTTCAGGCGAAACCAAAGCATCAACATCATATATCCTAATGAGAAGACTATGTTTATGGAGCCT
* * *
3204777 AATCCTAAAAGAATGGAGATTTGTATGACTACTCATCTTTGTCTTATTTAAGGGAGAAACTTTGA
260 AATCCAAAAAGAATGGAGATTTGTATAACTACTCATCTTTGTCTTATTTAAGAGAGAAACTTTGA
* * * *
3204842 GTCTAAAAAAAATGAGGGAATAAAAAGCTTTTTTTGTGACACCAAAGCATCAATGTCATGTATCC
325 GTCGAAAAAAAACGAGGGAATAAAAAGCTTTTTTTATGACACCAAAACATCAATGTCATGTATCC
* * * *
3204907 TAATAAAGAGAATGGGATTTTGGTTCCTAATCTTGAAAGGAATGGAGACTGTTACGAGATTTGAT
390 TAATAAAGAGAATGAGATTTTGGTTCCTAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGAT
* *
3204972 GCTTGTCCTATTTAAGGGATAAACTTTGATTTTAAGGAAAGCAAGGCAGAGAAAAGATTTTCATG
455 GCTTGTCCTATTTAAGGGATAAACTTTGATTTTAAGGAAA-CAAGGCAAAGAAAAGATTTCCATG
* * * * *
3205037 CGAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTATTTATATTGCCTAATCGCAA
519 CAAAAAAAAATCATCAATATCATTTATCCTAATGAAGAGAATGTATTTATAGTGCCTAATCACAA
* * * * *
3205102 AAAGAATGAAAATTATTACTAGAATCCATTTTTGTCTCATTTGGGGCACGAACTTAGACTTTACA
584 AAAGAATGAAAATCATTACTAGAATCCATGTTTGGCTCATTTGAGGCACGAACTTAGACTTTAAA
** * * **
3205167 AAAATTGGTTAGCAAAAAGCCTTTCTTGTGAAACTAAAGCATCGATGTCATGTACCCTAATGAAG
649 AAAATTGG-TAGCAAAAAGCCTTTCTTGCAAAACCAAAGCATCAACATCATGTACCCTAATGAAG
* * * *
3205232 AGGATATGTTTTTGGTTCCTAATCTTGAAAAAATTGGAGACTATTTCGAGAATCGATGCTAATCT
713 AAGATATGTTTATGGTGCCTAATCCTGAAAAAATTGGAGACTATTTCGAGAATCGATGCTAATCT
3205297 TATTTACAAATA
778 TATTTACAAATA
* * * *
3205309 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTCTGC-GCAAAAGAAAATCATCAGTATC
1 AACTTTGATTTTAAAGAAAATAAGACAAAGAAAAGATT-TCCAGCAAAAGAAAATCATCAGTATC
** * * *
3205373 ATTT-TCCCTAATGAGGAGAAAGTGTTTATAGTGCCTAATCGCAAAAAGAATTAAGATCATTACT
65 ATTTAT-CCTAAAAAGGAGAAAGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGAACATTACT
* * * ** * * *
3205437 AGAATCCATGTTTATG-TTATTTGAGGTGCGAACTTAGACTTTT-CAAAAATTTGTGG-GAA-AA
129 AGAATCCATGTTT-GGCTCATTTGACGCACGAACTTACA-TTTTACAAAAATTGGGGGAGAAGAA
* * *
3205498 AGCCCTT-AGGATGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGA
192 AGCCCTTCAGG-CGAAACCAAAGCATCAACATCATATATCCTAATGAGAAGACTATGTTTATGGA
* * * * * *
3205562 GCCTAATCACAAAAAGAATGGAGATTTTTATAAGTATTCATGTTTGTCTTATTTGAGAGATAAAC
256 GCCTAATC-CAAAAAGAATGGAGATTTGTATAACTACTCATCTTTGTCTTATTTAAGAGAGAAAC
* ** * ** * ** *
3205627 TTTGATTCGATTAGAAACGTTGGAA-AGAAAAG-TTTTTCTTATGATACCAAAATGTCACTGTCA
320 TTTGAGTCGAAAAAAAACGAGGGAATA-AAAAGCTTTTT-TTATGACACCAAAACATCAATGTCA
* * * * * *
3205690 TGTATCCTAATGAAGGGACT-ATATTTTTGGGTTCC-AATCTTGAAAATAATGGAGACTGTTATG
383 TGTATCCTAATAAAGAGAATGAGA-TTTT-GGTTCCTAATCTTGAAAAGAATGGAGACTGTTACG
* * * *
3205753 AGAATCGATGCTTGTCTTATTTAAGGGTTGAACTTTGATTTTAAGGAAA-ATAGGATAAAGAAAA
446 AGAATCGATGCTTGTCCTATTTAAGGGATAAACTTTGATTTTAAGGAAACA-AGG-CAAAGAAAA
* * * *
3205817 GATTTCCATGCAAAAAAAAAATGATTATTATCATTTATCCTAATGAAGAGAATGTGTTTATAGTG
509 GATTTCCATGC-AAAAAAAAATCATCAATATCATTTATCCTAATGAAGAGAATGTATTTATAGTG
* * * * *
3205882 CCTAATCACAAAATGAAT-AATGATCATTACTAGAATCCATGTTTGGCTTATTTGATGCATGAAC
573 CCTAATCACAAAAAGAATGAA-AATCATTACTAGAATCCATGTTTGGCTCATTTGAGGCACGAAC
* * * *
3205946 TTAGATTTTAAAAAAATTAGG-GGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAACATCGTG
637 TTAGACTTTAAAAAAATT-GGTAGCAA-AAAGCCTTTCTTGCAAAACCAAAGCATCAACATCATG
* * *
3206010 TATCCTTAT-AAGAAGACTATGTTTATGGTGCTTAATCCTGAAAA
700 TACCCTAATGAAGAAGA-TATGTTTATGGTGCCTAATCCTGAAAA
3206054 GAATGGGGAT
Statistics
Matches: 622, Mismatches: 106, Indels: 35
0.82 0.14 0.05
Matches are distributed among these distances:
788 2 0.00
789 73 0.12
790 210 0.34
791 293 0.47
792 42 0.07
793 2 0.00
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (789 bp):
AACTTTGATTTTAAAGAAAATAAGACAAAGAAAAGATTTCCAGCAAAAGAAAATCATCAGTATCA
TTTATCCTAAAAAGGAGAAAGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGAACATTACTAG
AATCCATGTTTGGCTCATTTGACGCACGAACTTACATTTTACAAAAATTGGGGGAGAAGAAAGCC
CTTCAGGCGAAACCAAAGCATCAACATCATATATCCTAATGAGAAGACTATGTTTATGGAGCCTA
ATCCAAAAAGAATGGAGATTTGTATAACTACTCATCTTTGTCTTATTTAAGAGAGAAACTTTGAG
TCGAAAAAAAACGAGGGAATAAAAAGCTTTTTTTATGACACCAAAACATCAATGTCATGTATCCT
AATAAAGAGAATGAGATTTTGGTTCCTAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATG
CTTGTCCTATTTAAGGGATAAACTTTGATTTTAAGGAAACAAGGCAAAGAAAAGATTTCCATGCA
AAAAAAAATCATCAATATCATTTATCCTAATGAAGAGAATGTATTTATAGTGCCTAATCACAAAA
AGAATGAAAATCATTACTAGAATCCATGTTTGGCTCATTTGAGGCACGAACTTAGACTTTAAAAA
AATTGGTAGCAAAAAGCCTTTCTTGCAAAACCAAAGCATCAACATCATGTACCCTAATGAAGAAG
ATATGTTTATGGTGCCTAATCCTGAAAAAATTGGAGACTATTTCGAGAATCGATGCTAATCTTAT
TTACAAATA
Found at i:3207157 original size:949 final size:948
Alignment explanation
Indices: 3205202--3207300 Score: 2480
Period size: 949 Copynumber: 2.2 Consensus size: 948
3205192 TTGTGAAACT
* * *
3205202 AAAGCATCGATGTCATGTACCCTAATGAAGAGGATATGT-TTTTGGTTCCTAATCTTGAAAA-AA
1 AAAGCATCAATGTCATGTATCCTAATAAAG-GGA-ATGTATTTTGGTTCCTAATCTTGAAAAGAA
* * * * * **
3205265 TTGGAGACTATTTCGAGAATCGATGCTAATCTTATTTACA--AATAAACTTTGATTTTAAGGAAA
64 -TAGAGACTGTTACGAGATTTGATGCTTGTCTTATTTA-AGGAATAAACTTTGATTTTAAGGAAA
* *
3205328 ATAGGGCAAAGAAAAGA-TTC-TGCGCAAAAGAAAATCATCAGTATCATTTTCCCTAATGAGGAG
127 ATAGGGC-AAGAAAAGATTTCAT--GCAAAAGAAAATCATCAGTATCATTTACTCTAATGAGGAG
* * * * *
3205391 AAAGTGTTTATAGTGCCTAATCGCAAAAAGAATTAAGATCATTACTAGAATCCATGTTTATGTTA
189 AATGTGTTTATACTGCCTAATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTATGTCA
* * * * * *
3205456 TTTGAGGTGCGAACTTAGACTTTTCAAAAATTTGTGGGAAAAAGCCCTTAGGATGAAACCAAAGC
254 TTGGAGGCGCGAACTTAGAATTTACAAAAATTGGTGGGAAAAAGCCCTTAGGACGAAACCAAAGC
*
3205521 ATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGAGCCTAATCACAAAAAGAATGGAGA
319 ATCAACATCATGTATCCTAATGAGAAGACTATGTTTATGGAGCCTAATCACAAAAAGAATGGAGA
** * * * * *
3205586 TTTTTATAAGTATTCATGTTTGTCTTATTTGAGAGATAAACTTTGATTCGATTAGAAACGTTGGA
384 TTAGTATAAGTATTCATGTTTGTCTTATTTGAGAGACAAACTTTGATTCGATCAAAAACGGTAGA
* * ** * ** * *
3205651 AAGAAAAGTTTTTCTTATGATACCAAAATGTCACTGTCATGTATCCTAATGAAGGGACTATATTT
449 AAGAAAAGTTTTTCTTACGACACCAAAACATCAATGTCATGTATCCTAAAAAAGGGAATATATTA
* * * * **
3205716 TTGGGTTCCAATCTTGAAAATAATGGAGACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGT
514 TTGGGTTCCAATCTTGAAAAGAATGGAGACTATTACGAAAATCGATGCTTGTCTTATTTAAGGCA
* *
3205781 TGAACTTTGATTTTAAGGAAAATAGGATAAAGAAAAGATTTCCATGCAAAAAAAAAATGATTATT
579 TGAACTTTGATTTTAAGGAAAATAGGACAAAGAAAAGATTTCCATGCAAAAAAAAAATCA-TATT
3205846 ATCATTTATCCTAATGAAGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAATGATCATTA
643 ATCATTTATCCTAATGAAGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAATGATCATTA
* * * * * * *
3205911 CTAGAATCCATGTTTGGCTTATTTGATGCATGAACTTAGATTTTAAAAAAATTAGGGGGAAGAAA
708 CTACAATCCATATTTGGCTCATTTGAGGCACGAACTTAGACTTTAAAAAAATTAGGGGCAAGAAA
* * * * * * *
3205976 GCCTTTCTTGCAAAACCAAAGCATCAACATCGTGTATCCTTATAAGAAGACTATGTTTATGGTGC
773 GCCTTACTTACAAAACCAAAGCAGCAACATCATGTATCCTAATAAGAAGACTATGCTTATGGTAC
* * * * * * ** *
3206041 TTAATCCTGAAAAGAATGGGGATTTGTATGACTACTCATCTTTGTCTTATTTAGGGGAGAAACTT
838 CTAATCCTAAAAAGAAAGGGGATTTGCATGACTACTCATATTTGTCTTATTTAAGAAACAAACTT
* *
3206106 TGAATCTATCAAAAATGGGGGAAAGAAAAGCTTTTTTTGCGACACC
903 TGAATCTATCAAAAATGGGGGAAAGAAAAGCTTATCTTGCGACACC
* * * * * *
3206152 AAAGCATCAATATCATGTATCCTAATTAAGAGAATGGTATTTTGTTTCCTAATCTTGAAAGGAGT
1 AAAGCATCAATGTCATGTATCCTAATAAAGGGAAT-GTATTTTGGTTCCTAATCTTGAAAAGAAT
* * **
3206217 AGAGACTGTTACGAGATTTGATGCTTGTCCTATTTAAGGGATAAACTTTGATTTTAAGGAAGGTA
65 AGAGACTGTTACGAGATTTGATGCTTGTCTTATTTAAGGAATAAACTTTGATTTTAAGGAAAATA
* * *
3206282 GGGCAGAGAAAAGATTTCAATTCAAAAGAAAATCATCAATATCATTTACTCTAGTGAGGAGAATG
130 GGGCA-AGAAAAGATTTC-ATGCAAAAGAAAATCATCAGTATCATTTACTCTAATGAGGAGAATG
* * ** * *
3206347 TGTTTATACTGCTTAATCACAAAATGAATGAAGATTTTTATTAGAATCCATGTTTGTGTCATTGG
193 TGTTTATACTGCCTAATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTATGTCATTGG
* * * **
3206412 AGGCGGGAACTTCGAATTTACGAAAATTGGTGGGAAAGAAGCCCTTCTTG-CGAAACCAAAGCAT
258 AGGCGCGAACTTAGAATTTACAAAAATTGGTGGGAAA-AAGCCCTT-AGGACGAAACCAAAGCAT
* * * * * * *
3206476 TAGCATCTTTTATCCTAATGAGAAGACTAT-TTTCTGGTA-CCTAA-CCCTAAAAAGAATGG-GG
321 CAACATCATGTATCCTAATGAGAAGACTATGTTTATGG-AGCCTAATCAC-AAAAAGAATGGAGA
* * * * *
3206537 TTAGTATGAGTATTCATGTTTGTCTTATTTTAGAGACAAATTTTGATTCTATCAAAAATGGTAGA
384 TTAGTATAAGTATTCATGTTTGTCTTATTTGAGAGACAAACTTTGATTCGATCAAAAACGGTAGA
* *
3206602 AAGAAAAGCTTTTT-TTACGACACCAAAGCATCAATGTCATGTATCCTAAAAAAGGGAATGTATT
449 AAGAAAAG-TTTTTCTTACGACACCAAAACATCAATGTCATGTATCCTAAAAAAGGGAATATATT
* * *
3206666 ATT-GGTTCATAATTTTGAAAAGAGTGGAGACTATTACGAAAATCGATGCTTGTCTTATTTAAGG
513 ATTGGGTTC-CAATCTTGAAAAGAATGGAGACTATTACGAAAATCGATGCTTGTCTTATTTAAGG
* * * ** *
3206730 CATGAACTTTGGTTTTAAGGAAAATAGGGCAAAGAAAATATTTCTGTGCAAAAGAAATAATCA-A
577 CATGAACTTTGATTTTAAGGAAAATAGGACAAAGAAAAGATTTCCATGCAAAA-AAAAAATCATA
* *
3206794 -TATCATTTATCCTAAT-AAGGAGAATGTGTTTATAGTGCTTAATCACAAAATGAATGAA-GATT
641 TTATCATTTATCCTAATGAA-GAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT-AATGATC
*
3206856 ATTACTACAATCCA-ATTTGGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATT-GGTTGG
704 ATTACTACAATCCATATTTGG-CTCATTTGAGGCACGAACTTAGACTTTAAAAAAATTAGG--GG
* * * *
3206919 CAA-AAAGCCTTACTTACGAAACTAAAGCAGCAATATCATGTATCCTAATGAGAAGACTATGCTT
766 CAAGAAAGCCTTACTTACAAAACCAAAGCAGCAACATCATGTATCCTAATAAGAAGACTATGCTT
* * * *
3206983 ATGGTACCTAATCCTAAAAAGAAAGGTGATTTGCATGAGTATTTATATTTGTCTTATTTAAGAAA
831 ATGGTACCTAATCCTAAAAAGAAAGGGGATTTGCATGACTACTCATATTTGTCTTATTTAAGAAA
* *
3207048 CAAACTTTGATTCTATTAAAAATGGGGGAAAGAAAAGCTTATCTTGCGACACC
896 CAAACTTTGAATCTATCAAAAATGGGGGAAAGAAAAGCTTATCTTGCGACACC
* *
3207101 AAAGCATCAATGTCATGAATCCTAATAAAGGGAATGTATTTTGGCTTCCCAATCTTGAAAAGAAT
1 AAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTATTTTGG-TTCCTAATCTTGAAAAGAAT
* * * * * *
3207166 ACAGACTGTTATGGGAATCT-ATGCTTGTCTTATTTAAGGAATGAACTTTAATTTTAAGGAAAAT
65 AGAGACTGTTACGAG-ATTTGATGCTTGTCTTATTTAAGGAATAAACTTTGATTTTAAGGAAAAT
* * *
3207230 AGGGCCAAGAAAAGATTTTCATGCAAACA-AAAATCATCAGTACCATTTA-TCCTAATAAGCAGA
129 AGGG-CAAGAAAAGA-TTTCATGCAAA-AGAAAATCATCAGTATCATTTACT-CTAATGAGGAGA
3207293 ATGTGTTT
190 ATGTGTTT
3207301 GTTAGGATCT
Statistics
Matches: 966, Mismatches: 156, Indels: 55
0.82 0.13 0.05
Matches are distributed among these distances:
948 20 0.02
949 405 0.42
950 98 0.10
951 235 0.24
952 159 0.16
953 47 0.05
954 2 0.00
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (948 bp):
AAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTATTTTGGTTCCTAATCTTGAAAAGAATA
GAGACTGTTACGAGATTTGATGCTTGTCTTATTTAAGGAATAAACTTTGATTTTAAGGAAAATAG
GGCAAGAAAAGATTTCATGCAAAAGAAAATCATCAGTATCATTTACTCTAATGAGGAGAATGTGT
TTATACTGCCTAATCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTATGTCATTGGAGG
CGCGAACTTAGAATTTACAAAAATTGGTGGGAAAAAGCCCTTAGGACGAAACCAAAGCATCAACA
TCATGTATCCTAATGAGAAGACTATGTTTATGGAGCCTAATCACAAAAAGAATGGAGATTAGTAT
AAGTATTCATGTTTGTCTTATTTGAGAGACAAACTTTGATTCGATCAAAAACGGTAGAAAGAAAA
GTTTTTCTTACGACACCAAAACATCAATGTCATGTATCCTAAAAAAGGGAATATATTATTGGGTT
CCAATCTTGAAAAGAATGGAGACTATTACGAAAATCGATGCTTGTCTTATTTAAGGCATGAACTT
TGATTTTAAGGAAAATAGGACAAAGAAAAGATTTCCATGCAAAAAAAAAATCATATTATCATTTA
TCCTAATGAAGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAATGATCATTACTACAATC
CATATTTGGCTCATTTGAGGCACGAACTTAGACTTTAAAAAAATTAGGGGCAAGAAAGCCTTACT
TACAAAACCAAAGCAGCAACATCATGTATCCTAATAAGAAGACTATGCTTATGGTACCTAATCCT
AAAAAGAAAGGGGATTTGCATGACTACTCATATTTGTCTTATTTAAGAAACAAACTTTGAATCTA
TCAAAAATGGGGGAAAGAAAAGCTTATCTTGCGACACC
Found at i:3209366 original size:476 final size:475
Alignment explanation
Indices: 3208448--3209402 Score: 1292
Period size: 476 Copynumber: 2.0 Consensus size: 475
3208438 GCTTACAATA
3208448 TTTATAGTGCCCAATCACAAAATGAATGAAAATTATTACTAGAATCAATGCTTGTCTCATTTGAG
1 TTTATAGTGCCCAATCACAAAATGAATGAAAATTATTACTAGAATCAAT-CTTGTCTCATTTGAG
* ** * *
3208513 GCACGAACTTATACTTTATGAAAATTGGTGGGAAAAAAGCCTTTCCTGCGAATCCAAAGCATCAA
65 GCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTACCTGCGAAACCAAAGCATCAA
* * * *
3208578 TCTCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATTCTGAAAAGAATGGGGATTAGC
130 TATCATGTATCCTAACGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGC
* ** * *
3208643 ATGAGCATTTATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACATTGGAAAATA
195 ATGAGCATTTATATTCCTCTTATTTAAGAAACAAACTTTGATTCTATAAAAAACATGGGAAAATA
* ** * * *
3208708 AAAAGCTTTTTTTGTAACACCAAATCATCAATGTCATGTATCCTAGTGAAGGGAATGTGTTTTTG
260 AAAAGCTTTTCTTACAACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTG
* *
3208773 GTTCCCAATCTTGAAAAGAATGGAGATTGTAAGAAGAATTGAAGCTTGTCTTATTTAAAGGATGA
325 GTTCCCAATCTTGAAAAGAATGGAGACTGTAAGAAGAATCGAAGCTTGTCTTATTTAAAGGATGA
* *
3208838 ACTTTGAGTTTAAGGAATTAGGGCAAAGAAAAGACTTCTATGAAAAAAAAATCATCAATATCATT
390 ACTTTGAGTTTAAGGAAATAGGGCAAAGAAAAGACTTCCATGAAAAAAAAATCATCAATATCATT
*
3208903 TATCCTAATGAGGAGAATGTG
455 TATCCTAATGAGGAGAACGTG
* * **
3208924 TTTATAGTGCCTAATTACAAAATGAATGAGGATTATTACTAGAATCCAAT-TTAGTCTCATTTGA
1 TTTATAGTGCCCAATCACAAAATGAATGAAAATTATTACTAGAAT-CAATCTT-GTCTCATTTGA
* * * * *
3208988 GGCACGAACTTAGACTTTACAAAAATTGGTTGGCAAAAAGCCTTACTTGCTAAACTAAAGCATCA
64 GGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTACCTGCGAAACCAAAGCATCA
* * *
3209053 ATATCATGTATTCTAACGAGAAGACTATGTTTGTGGTGCCTAATCCTAAAAAGAATGGTGATTAG
129 ATATCATGTATCCTAACGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAG
* * * * *
3209118 TATGAGTATTTATATTCCTCTTATTTAAGAAATAAACTTTGATTCTAT-TAAAA-ATGGTGTAAA
194 CATGAGCATTTATATTCCTCTTATTTAAGAAACAAACTTTGATTCTATAAAAAACATGG-GAAAA
* * *
3209181 -GAAAAGCTTTTCTTACAATACCAAAGCATTAATGTCATGTATCCTAATGAAAGGAATGTG-TTT
258 TAAAAAGCTTTTCTTACAACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTT
* * * * * * *
3209244 TGGTTTCTCAATTTTGAAAAGAATGGAGGCTGTTACG-GGAATCGATGCTTGTCTTATTTAAGGG
323 TGG-TTCCCAATCTTGAAAAGAATGGAGACTG-TAAGAAGAATCGAAGCTTGTCTTATTTAAAGG
* * * *
3209308 ATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAACAAAAATCATCAGT
386 ATGAACTTTGAGTTTAAGG-AAATAGGGCAAAGAAAAGACTTCCATG-AAAAAAAAATCATCAAT
3209373 ATCATTTATCCTAATGAGGAGAACGTG
449 ATCATTTATCCTAATGAGGAGAACGTG
3209400 TTT
1 TTT
3209403 GTTAGGATCT
Statistics
Matches: 416, Mismatches: 56, Indels: 14
0.86 0.12 0.03
Matches are distributed among these distances:
473 6 0.01
474 119 0.29
475 37 0.09
476 250 0.60
477 4 0.01
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.32
Consensus pattern (475 bp):
TTTATAGTGCCCAATCACAAAATGAATGAAAATTATTACTAGAATCAATCTTGTCTCATTTGAGG
CACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTACCTGCGAAACCAAAGCATCAAT
ATCATGTATCCTAACGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGCA
TGAGCATTTATATTCCTCTTATTTAAGAAACAAACTTTGATTCTATAAAAAACATGGGAAAATAA
AAAGCTTTTCTTACAACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGG
TTCCCAATCTTGAAAAGAATGGAGACTGTAAGAAGAATCGAAGCTTGTCTTATTTAAAGGATGAA
CTTTGAGTTTAAGGAAATAGGGCAAAGAAAAGACTTCCATGAAAAAAAAATCATCAATATCATTT
ATCCTAATGAGGAGAACGTG
Found at i:3217507 original size:21 final size:21
Alignment explanation
Indices: 3217481--3217521 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
3217471 CTCTCAGTGC
*
3217481 ATAGATCAATGCTTTGACACA
1 ATAGATCAATGCCTTGACACA
3217502 ATAGATCAATGCCTTGACAC
1 ATAGATCAATGCCTTGACAC
3217522 GATGGATGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.37, C:0.22, G:0.15, T:0.27
Consensus pattern (21 bp):
ATAGATCAATGCCTTGACACA
Found at i:3217889 original size:42 final size:42
Alignment explanation
Indices: 3217843--3217933 Score: 173
Period size: 42 Copynumber: 2.2 Consensus size: 42
3217833 ATTTTTAAAT
3217843 AAATTTGTTTTATAAAAAGGGAGACTTTGTGGTAGTTTTGTA
1 AAATTTGTTTTATAAAAAGGGAGACTTTGTGGTAGTTTTGTA
*
3217885 AAATTTGTTTTATAAAAAGGGAGATTTTGTGGTAGTTTTGTA
1 AAATTTGTTTTATAAAAAGGGAGACTTTGTGGTAGTTTTGTA
3217927 AAATTTG
1 AAATTTG
3217934 GGAGATAACA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.32, C:0.01, G:0.23, T:0.44
Consensus pattern (42 bp):
AAATTTGTTTTATAAAAAGGGAGACTTTGTGGTAGTTTTGTA
Found at i:3218030 original size:21 final size:21
Alignment explanation
Indices: 3217989--3218030 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
3217979 AGAGAGCATT
* *
3217989 AAATATTTTATTAATGGGGAG
1 AAATATTTTATTAAAGAGGAG
3218010 AAATATTTTATTAAAGAGGAG
1 AAATATTTTATTAAAGAGGAG
3218031 CTATAAATTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.43, C:0.00, G:0.21, T:0.36
Consensus pattern (21 bp):
AAATATTTTATTAAAGAGGAG
Found at i:3220598 original size:475 final size:473
Alignment explanation
Indices: 3219533--3223128 Score: 4228
Period size: 475 Copynumber: 7.6 Consensus size: 473
3219523 TGAGCTTATA
* * *
3219533 GTGTTTATAGTGCCCAATCATAAAA-AAATGAAGATTATTACTAGAAT-CTATGTTTGTCTCATT
1 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTATTACTAGAATAC-ATGTTTGTCTCATT
* * **
3219596 TGAGGCACGAACTTAGACTATACAAAAATTGGTGGGAAAAAAGCCGCTCTTGC-AAATCCAAAGC
65 TGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAACCTTTCTTGCGAAA-CCAAAGC
* * * *
3219660 ATCAATCTCATGTATGCTAATTAGAAGACTATGTTTATAGTGCCTAATCCTGAAAAGAATGGGGA
129 ATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT-AAAAGAAT-GGGA
* * * ** *
3219725 TTAGTATGAGCATTTATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACATTAGA
192 TTTGTATGAGTATTTATATTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGTTGGA
* ** *
3219790 AAGAAAAGCTTTT-TATGCAACACCAAAGCATCAATGTCATGTACCCTAATGAAAAGAATGTGTT
257 AAGAAAAGCTTTTCT-TGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAACGTGTT
* * * * * * *
3219854 TTTAGTTCCTAATCTTGAAAAGAATGGAGACTATTATGAGAATCGAAGCTTGCCTTAATTAAGGA
321 TTTGGTTCCCAATCTTGAAAAGATTGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGA
* *
3219919 TTGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAA-AGTTTCCACGCAAAAGAAAATCATCAG
386 -TGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGA-TTTCCATGCAAAAGAAAATCATCAA
* * * *
3219983 TGTTATTTATCCTAA-CAAGGAGAAC
449 TATCATTTATCCTAATGAA-GAGAAT
* * * * * * *
3220008 GTGTTTATAATGCCCAATCACAAAATTAATGAAGCTTATTACGAGAATTCATATTTGTCTCATTT
1 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTATTACTAGAATACATGTTTGTCTCATTT
* *
3220073 GAGGAACAAACTTAGACTTTACAAAAATTGGTGGGAAAAAAACCTTTCTTGCGAAACCAAAGCAT
66 GAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAACCTTTCTTGCGAAACCAAAGCAT
* *
3220138 CAATATCATGTATCTTAAAGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAGGAATGGTGATT
131 CAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAA-GAATGG-GATT
* *
3220203 TGTATAAGTATTTATATTTGTCTTATTTAAGAGAAAAACTTTGATTCTATCAAAAATGTTGGAAA
194 TGTATGAGTATTTATATTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGTTGGAAA
* * * * * * * * *
3220268 GAAAAGCTTTTCTTGCGATACTAAAGAATAAATTTCATGTATACTAATGCAGGGAACGTGCTTTT
259 GAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAACGTGTTTTT
* * * *
3220333 GGTTCCCAATATTGAAAAGATTTGAGACTGTTACGAGAATCGATGCTTATCTTATTTAAGGATGA
324 GGTTCCCAATCTTGAAAAGATTGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGATGA
* *
3220398 ACTTTGATTTTAAGGAAAATATGGTAAAGAAAAG-TTCTCCATGCAAAAGAAAATCATCAATATC
389 ACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT-TCCATGCAAAAGAAAATCATCAATATC
3220462 ATTTATCCTAATGAAGAGAAT
453 ATTTATCCTAATGAAGAGAAT
* * * * *
3220483 ATGTTTATAGTGCCGAATCACAAAATGAATGGATATCATTACTAGAATACATGTTTGTCTCATTT
1 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTATTACTAGAATACATGTTTGTCTCATTT
* * * *
3220548 GAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAACGTTTCTTGCGAATCCAAAGCGT
66 GAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAACCTTTCTTGCGAAACCAAAGCAT
* * *
3220613 CAATATCATATATCCTGACGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATAGGGATT
131 CAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT-AAAAGAAT-GGGATT
* * * * * * *
3220678 TGTATGACTATTCATGTTTGTCTTATTTAAGAGAGAAACTTTGATTCTGTTAAAAAATGGTGGAA
194 TGTATGAGTATTTATATTTGTCTTATTTAAGAGACAAACTTTGATTCT-ATCAAAAATGTTGGAA
* * * * * *
3220743 ATAAAAG-ATTTCTTGCAACACCAATGCGTCAATGTCATGTATCCTAAGGAAGGGAACATGTTTT
258 AGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAACGTGTTTT
* * * * *
3220807 TGGTTCCCAATATTGAAAAGATTGGAGACTGTTACGAGATTTGTTGCTTGAT-TTATTTAAGGAT
323 TGGTTCCCAATCTTGAAAAGATTGGAGACTATTACGAGAATCGATGCTTG-TCTTATTTAAGGAT
*
3220871 GAACTTTGATTTTAAGGAAAATATGGCAAAGAAAAG-TCTTCCATGCAAAAGAAAATCATCAATA
387 GAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT-TTCCATGCAAAAGAAAATCATCAATA
* *
3220935 TCATTTATCTTAATGAGGAGAA-
451 TCATTTATCCTAATGAAGAGAAT
* * * * *
3220957 -TG-TAATAGTGCCTAATCATAAAATAAATGAAGATCATTACTAGAATACATGTTTATCTCATTT
1 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTATTACTAGAATACATGTTTGTCTCATTT
* * * * * * * * *
3221020 GAGGCACAAACCTAAACATTACAAAAATTGGTGGGAACAAAAGCCTTTCTTACGAATCCGAAGCG
66 GAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAA-AAAAACCTTTCTTGCGAAACCAAAGCA
* * * *
3221085 TCAATACCATGTATCATAATAAGAAGACTATGTTTATGGTGCCTAATCTTAAAAAGAATGGGATT
130 TCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT-AAAAGAATGGGATT
* * * * * *
3221150 TGTATGACTATTCATGTTTGTCTTATTTAAGATACAAACTTTGATTCTGTCAAAAATGGTGGAAA
194 TGTATGAGTATTTATATTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGTTGGAAA
* * ** * *
3221215 AAAAAGGTTTTCTTGGGACACCAAAGTATCAATGTCATGTATCTTAATGAAGGGAACGTGTTTTT
259 GAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAACGTGTTTTT
* * * *
3221280 GGTTCCCAATCTTGAAAAAATTGGAGACTATTACGAGAATCGAAGGTTGTCTTATTTAAAGGATT
324 GGTTCCCAATCTTGAAAAGATTGGAGACTATTACGAGAATCGATGCTTGTCTTATTT-AAGGATG
* * * * * *
3221345 AACTTTGCTTTAAAGCAAATTAGGGTAAAGAAAAGATTTCCATGTAAAAGAAAATCATCAATATC
388 AACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
*
3221410 ATTTATCCTAATGAGGAGAAT
453 ATTTATCCTAATGAAGAGAAT
* * *
3221431 GTGTTTATAGTGCCTAATCACAAAATGAATGAAAATTATTACTAGAATGCATTTTTGTCTCATTT
1 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTATTACTAGAATACATGTTTGTCTCATTT
* * * * * *
3221496 GAGGCCCGAACTTAGACTTTACAAAAATTGGAT-GGCAAAAAGCCTTTTTTGCGAAACTAAAGCT
66 GAGGCACGAACTTAGACTTTACAAAAATTGG-TGGGAAAAAAACCTTTCTTGCGAAACCAAAGCA
3221560 TCAATATCATGTATCCTAATGAGAAGACTATG-TTATGGTGCCTAATCCTATAAAGAATGGTGAT
130 TCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTA-AAAGAATGG-GAT
* * *
3221624 TTGTATGAGTATTTATATTTGTGTTATTTAAGAGACAAACTTTGGTTCTATCAAAAATGTTAGAA
193 TTGTATGAGTATTTATATTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGTTGGAA
* ** * * * * *
3221689 AGAAAAGCTTTTTTTGTGACACCAAAGTATCAATGTCATGAATCCTAATGAAGTGAAAGT-ATTT
258 AGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAACGTGTTTT
** * *
3221753 TCATTCCAAATCTTGAAAAGATTGGAGACTATTTA-TAGAATCGATGCTTGTCTTATTTAAGGGA
323 TGGTTCCCAATCTTGAAAAGATTGGAGACTA-TTACGAGAATCGATGCTTGTCTTATTTAA-GGA
* * * * *
3221817 TGAACTTTGATTTTAAGGAAAATAAGACAAAGAAAAGATTTCTAAGCAAAAGAAAGTCATC-ATA
386 TGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAAT-
3221881 ATCATTTA-CTCTAA-GAAGGAGAAT
450 ATCATTTATC-CTAATGAA-GAGAAT
* * *
3221905 GTGTTTATAGTACCTAATCATGAAAA-GAATGAAGATTATTACTAGAATCCATGTTTGTCTCATT
1 GTGTTTATAGTGCCTAATCA-CAAAATGAATGAAGATTATTACTAGAATACATGTTTGTCTCATT
* * *
3221969 TGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAACCTTTCTTGCGAATCCAAATCA
65 TGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAACCTTTCTTGCGAAACCAAAGCA
* * * *
3222034 TCAATATCATGTATTCTAATGAGAAGACAATGTTTATAGTGCCTACTCCTGAAAAGAATGGGGAT
130 TCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT-AAAAGAAT-GGGAT
* * * * * *
3222099 TAGAATGAGTATTAATGTTTGTCTTATTTAAGAGACAAAATTTGATTCTAACAAAAATGTTGGAA
193 TTGTATGAGTATTTATATTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGTTGGAA
* ** * * *
3222164 AGAAAAGCTTTTCATGCAATGCCAAAGCATCAATGTCATGTATCCTAACGAAGGAAATGTGTTTT
258 AGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAACGTGTTTT
* * * * * * * *
3222229 T-GCTCCCAATCTTGAAAAGAATAGAGACTATTACAAGAATCGAAGCTGGTTTTATTTAAGGGTT
323 TGGTTCCCAATCTTGAAAAGATTGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAA-GGAT
* *
3222293 GAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAGTAT
387 GAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATAT
* * *
3222358 CATTGATCCTAACGAGGAGAAT
452 CATTTATCCTAATGAAGAGAAT
* * * * *
3222380 GTGTTTGTAGTGCCCAATCACAAAATGAATGAGGATTATTACTAGAATGCAT-TTTAGTCTCGTT
1 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTATTACTAGAATACATGTTT-GTCTCATT
* * ** * * * * *
3222444 TAAGACATAAACTTAGACTTTACAAAAATTGGT-TGACAAAGAGCCTTTCTTGTGAAACTAAAGC
65 TGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGA-AAAAAACCTTTCTTGCGAAACCAAAGC
* * * * *
3222508 TTCACTATCATGCATCCTAATGAGAAGACTATG-TTACGGTGCATAATCCTAAAAAGAATGGTGA
129 ATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT-AAAAGAATGG-GA
* * * * *
3222572 TTTGTATGAGTATCTACATTTGTGTTATTTAAGAGACAAACATTGATTCTATCAAAAAAGTTGGA
192 TTTGTATGAGTATTTATATTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGTTGGA
* ** *
3222637 AAGAAAAGCTTATT-TTGCAACACCGAAGTGTCAATGTCATGTATCCTAATGAAAGGAATC-TGT
257 AAGAAAAGCTT-TTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAA-CGTGT
* * * * *
3222700 TTTTTGTTCCCAATCTTGAAAAGATTAGAGACTGTTACGAGAATTGATGCTTATCTTATTT-AGG
320 TTTTGGTTCCCAATCTTGAAAAGATTGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGG
* * * * *
3222764 AAAGAACTTTGATTTTAAGAAAAATATGGCAAAGAAAAGATTTCCATGCAAAAGTAACTCATCAA
385 -ATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAA
*
3222829 TAACATTTATCCTAAT-AAG-GACATT
449 TATCATTTATCCTAATGAAGAGA-A-T
* * * * *
3222854 ATGTTTACAGTGCCTAATCATAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT
1 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTATTACTAGAATACATGTTTGTCTCATTT
* * * ***
3222919 GAGGCACGAACTTAGACCTTAACAAAAATTGGTGGGAAAAAATCCTTTCTTACGAGTTCAAAGCA
66 GAGGCACGAACTTAGA-CTTTACAAAAATTGGTGGGAAAAAAACCTTTCTTGCGAAACCAAAGCA
** ** *
3222984 TCAATATCATGTATCCTAAACAGAAGACTATGTTTATGGTATCTAATCCTGAAACGAATAGGGAT
130 TCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT-AAAAGAAT-GGGAT
* * * * * * *
3223049 TAGTATGGGTATTCATATTTGTCTTATTTAAGAGACAAACATTGATTCTATCAGAAACGTTAGAA
193 TTGTATGAGTATTTATATTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGTTGGAA
*
3223114 AGAAAAGTTTTTCTT
258 AGAAAAGCTTTTCTT
3223129 ACAGCACTGT
Statistics
Matches: 2667, Mismatches: 398, Indels: 111
0.84 0.13 0.03
Matches are distributed among these distances:
471 21 0.01
472 236 0.09
473 174 0.07
474 563 0.21
475 1154 0.43
476 511 0.19
477 8 0.00
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (473 bp):
GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTATTACTAGAATACATGTTTGTCTCATTT
GAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAACCTTTCTTGCGAAACCAAAGCAT
CAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAGAATGGGATTTG
TATGAGTATTTATATTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGTTGGAAAGA
AAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAACGTGTTTTTGG
TTCCCAATCTTGAAAAGATTGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGATGAAC
TTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATT
TATCCTAATGAAGAGAAT
Found at i:3222087 original size:158 final size:159
Alignment explanation
Indices: 3219534--3223080 Score: 1000
Period size: 158 Copynumber: 22.4 Consensus size: 159
3219524 GAGCTTATAG
* * * * *
3219534 TGTTTATAGTGCCCAATCAT-AAAAAAATGAAGATTATTACTAGAA-TCTATGTTTGTCTCATTT
1 TGTTTATAGTGCCTAATCCTGAAAAGAATGGAGATTATTACTAGAATTC-ATGTTTGTCTTATTT
* * * * * ** *
3219597 GAGGCACGAACTTAGACTATACAAAAATTGGTGGGAAA-AAAGCCGCTCTTGC-AAATCCAAAGC
65 AAGGCATGAACTTTGACTTTACAAAAATTGGTGGGAAAGAAAACCTTTCTTGCGAAA-CCAAATC
* * *
3219660 ATCAATCTCATGTATGCTAATTAGAAG-ACTA
129 ATCAATATCATGTATCCTAATGAGAAGAAC-A
* * * *
3219691 TGTTTATAGTGCCTAATCCTGAAAAGAATGGGGATTAGTA-TGAGCATTTATGTTTGTCTTATTT
1 TGTTTATAGTGCCTAATCCTGAAAAGAATGGAGATTATTACT-AGAATTCATGTTTGTCTTATTT
* * * *
3219755 AAGAGACA--AACTTTGA-TTCTATCAAAAACAT--T-AGAAAGAAAAGCTTTTTATGC-AACAC
65 AAG-G-CATGAACTTTGACTT-TA-CAAAAA-TTGGTGGGAAAGAAAACCTTTCT-TGCGAA-AC
* * * * **
3219813 CAAAGCATCAATGTCATGTACCCTAATGAAAAGAATG
123 CAAATCATCAATATCATGTATCCTAATGAGAAGAACA
* * * * * * * *
3219850 TGTTTTTAGTTCCTAATCTTGAAAAGAATGGAGACTATTA-TGAGAA-TCGAAGCTTGCCTTAAT
1 TGTTTATAGTGCCTAATCCTGAAAAGAATGGAGATTATTACT-AGAATTC-ATGTTTGTCTTATT
* * * ** ** * **
3219913 TAAGG-ATTGAACTTTGATTTTA-AGGAAAA-TAG-GGCAAAGAAAAAGTTTCCACGCAAAAGAA
64 TAAGGCA-TGAACTTTGACTTTACA--AAAATTGGTGGGAAAGAAAACCTTT-CTTGCGAAACCA
* * * * ** * *
3219974 AATCATCAGTGTTATTTATCCTAACAAGGAGAACG
125 AATCATCAATATCATGTATCCTAATGAGAAGAACA
* * * * * * * *
3220009 TGTTTATAATGCCCAATCAC--AAAATTAATGAAGCTTATTACGAGAATTCATATTTGTCTCATT
1 TGTTTATAGTGCCTAATC-CTGAAAA-GAATGGAGATTATTACTAGAATTCATGTTTGTCTTATT
* * ** * *
3220072 TGAGGAACAAACTTAGACTTTACAAAAATTGGTGGGAAA-AAAACCTTTCTTGCGAAACCAAAGC
64 TAAGGCATGAACTTTGACTTTACAAAAATTGGTGGGAAAGAAAACCTTTCTTGCGAAACCAAATC
* *
3220136 ATCAATATCATGTATCTTAAAGAGAAG-ACTA
129 ATCAATATCATGTATCCTAATGAGAAGAAC-A
* * * * *
3220167 TGTTTATGGTGCCTAATCCT-AAAAGGAATGGTGATT-TGTA-TAAGTATTTATATTTGTCTTAT
1 TGTTTATAGTGCCTAATCCTGAAAA-GAATGGAGATTAT-TACT-AGAATTCATGTTTGTCTTAT
** * * * *
3220229 TTAAGAG-AAAAACTTTGA-TTCTATCAAAAA-T-GTTGGAAAGAAAAGCTTTTCTTGCGATACT
63 TTAAG-GCATGAACTTTGACTT-TA-CAAAAATTGGTGGGAAAGAAAA-CCTTTCTTGCGAAACC
** * * * * *
3220290 AAAGAATAAATTTCATGTATACTAATGCAG-GGAACG
124 AAATCATCAATATCATGTATCCTAATG-AGAAGAACA
* * * ** * * * * * * *
3220326 TGCTTT-TGGTTCCCAATATTGAAAAGATTTGAGACTGTTACGAGAA-TCGATGCTTATCTTATT
1 TG-TTTATAGTGCCTAATCCTGAAAAGAATGGAGATTATTACTAGAATTC-ATGTTTGTCTTATT
* * * * **
3220389 TAAGG-ATGAACTTTGATTTTA-AGGAAAATATGGT---AAAGAAAA-GTTCTCCATGCAAAAGA
64 TAAGGCATGAACTTTGACTTTACA--AAAAT-TGGTGGGAAAGAAAACCTT-T-CTTGCGAAACC
* *
3220448 AAATCATCAATATCATTTATCCTAATGA-AGAGAATA
124 AAATCATCAATATCATGTATCCTAATGAGA-AGAACA
* * * * *
3220484 TGTTTATAGTGCCGAATCAC--AAAATGAATGGATATCATTACTAGAATACATGTTTGTCTCATT
1 TGTTTATAGTGCCTAATC-CTGAAAA-GAATGGAGATTATTACTAGAATTCATGTTTGTCTTATT
* * * * *
3220547 TGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAA-AAAACGTTTCTTGCGAATCCAAAGC
64 TAAGGCATGAACTTTGACTTTACAAAAATTGGTGGGAAAGAAAACCTTTCTTGCGAAACCAAATC
* * * *
3220611 GTCAATATCATATATCCTGACGAGAAG-ACTA
129 ATCAATATCATGTATCCTAATGAGAAGAAC-A
* *
3220642 TGTTTATGGTGCCTAATCCTAAAAAGAATAGG-GATT-TGTA-T-GACTATTCATGTTTGTCTTA
1 TGTTTATAGTGCCTAATCCTGAAAAGAAT-GGAGATTAT-TACTAGA--ATTCATGTTTGTCTTA
* **
3220703 TTTAAGAG-A-GAAACTTTGATTCTGTTA-AAAAA-TGGT-GGAAATAAAAGATTTCTTGC-AAC
62 TTTAAG-GCATG-AACTTTGA--CT-TTACAAAAATTGGTGGGAAAGAAAACCTTTCTTGCGAA-
* *
3220762 ACC-AATGCGTCAATGTCATGTATCCTAA-G-GAAGGGAACA
121 ACCAAAT-CATCAATATCATGTATCCTAATGAGAA--GAACA
* * * * ** * * * * * ** *
3220801 TGTTTTTGGTTCCCAATATTGAAAAGATTGGAGACTGTTACGAGATTTGTTGCTTGAT-TTATTT
1 TGTTTATAGTGCCTAATCCTGAAAAGAATGGAGATTATTACTAGAATTCATGTTTG-TCTTATTT
* * * * * * * **
3220865 AAGG-ATGAACTTTGATTTTA-AGGAAAA-T-ATGGCAAAGAAAAGTCTTCCATGCAAAAGAAAA
65 AAGGCATGAACTTTGACTTTACA--AAAATTGGTGGGAAAGAAAA-CCTTTCTTGCGAAACCAAA
* * *
3220926 TCATCAATATCATTTATCTTAATGAGGAG-A-A
127 TCATCAATATCATGTATCCTAATGAGAAGAACA
* * * * * * * *
3220957 TG-TAATAGTGCCTAATCAT-AAAATAAATGAAGATCATTACTAGAATACATGTTTATCTCATTT
1 TGTTTATAGTGCCTAATCCTGAAAA-GAATGGAGATTATTACTAGAATTCATGTTTGTCTTATTT
* ** * ** * * * * * *
3221020 GAGGCACAAACCTAAACATTACAAAAATTGGTGGGAACA-AAAGCCTTTCTTACGAATCCGAAGC
65 AAGGCATGAACTTTGACTTTACAAAAATTGGTGGGAA-AGAAAACCTTTCTTGCGAAACCAAATC
* * * *
3221084 GTCAATACCATGTATCATAATAAGAAG-ACTA
129 ATCAATATCATGTATCCTAATGAGAAGAAC-A
* * *
3221115 TGTTTATGGTGCCTAATCTTAAAAAGAATGG-GATT-TGTA-T-GACTATTCATGTTTGTCTTAT
1 TGTTTATAGTGCCTAATCCTGAAAAGAATGGAGATTAT-TACTAGA--ATTCATGTTTGTCTTAT
** ** * * ** * *
3221176 TTAAGATACAAACTTTGA-TTCTGTCAAAAA-TGGT-GGAAAAAAAAGGTTTTCTTGGGACACCA
63 TTAAGGCATGAACTTTGACTT-T-ACAAAAATTGGTGGGAAAGAAAA-CCTTTCTTGCGAAACCA
* * * *
3221238 AAGT-ATCAATGTCATGTATCTTAATGA-AGGGAACG
125 AA-TCATCAATATCATGTATCCTAATGAGA-AGAACA
* * * * * * * * *
3221273 TGTTTTTGGTTCCCAATCTTGAAAA-AATTGGAGACTATTACGAGAA-TCGAAGGTTGTCTTATT
1 TGTTTATAGTGCCTAATCCTGAAAAGAA-TGGAGATTATTACTAGAATTC-ATGTTTGTCTTATT
* * * ** * ** **
3221336 TAAAGG-ATTAACTTTG-CTTTA-AAGCAAATTAG-GGTAAAGAAAAGATTTCCATGTAAAAGAA
64 T-AAGGCATGAACTTTGACTTTACAA--AAATTGGTGGGAAAGAAAACCTTT-CTTGCGAAACCA
* * **
3221397 AATCATCAATATCATTTATCCTAATGAGGAGAATG
125 AATCATCAATATCATGTATCCTAATGAGAAGAACA
* * * * *
3221432 TGTTTATAGTGCCTAATCAC--AAAATGAATGAAAATTATTACTAGAATGCATTTTTGTCTCATT
1 TGTTTATAGTGCCTAATC-CTGAAAA-GAATGGAGATTATTACTAGAATTCATGTTTGTCTTATT
* ** * * * * * *
3221495 TGAGGCCCGAACTTAGACTTTACAAAAATTGGAT-GGCAA-AAAGCCTTTTTTGCGAAACTAAAG
64 TAAGGCATGAACTTTGACTTTACAAAAATTGG-TGGGAAAGAAAACCTTTCTTGCGAAACCAAAT
*
3221558 CTTCAATATCATGTATCCTAATGAGAAG-ACTA
128 CATCAATATCATGTATCCTAATGAGAAGAAC-A
* * * * * *
3221590 TG-TTATGGTGCCTAATCCT-ATAAAGAATGGTGATT-TGTA-TGAGTATTTATATTTGTGTTAT
1 TGTTTATAGTGCCTAATCCTGA-AAAGAATGGAGATTAT-TACT-AGAATTCATGTTTGTCTTAT
* ** * * * *
3221651 TTAAGAGACA--AACTTTG-GTTCTATCAAAAA-T-GTTAGAAAGAAAAGCTTTTTTTGTGACAC
63 TTAAG-G-CATGAACTTTGACTT-TA-CAAAAATTGGTGGGAAAGAAAA-CCTTTCTTGCGAAAC
* * *
3221711 CAAAGT-ATCAATGTCATGAATCCTAATGA-AGTGAA-A
123 CAAA-TCATCAATATCATGTATCCTAATGAGA-AGAACA
* * * * * * *
3221747 -GTATTTTCA-TTCCAAATCTTGAAAAGATTGGAGACTATTTA-TAGAA-TCGATGCTTGTCTTA
1 TGT-TTAT-AGTGCCTAATCCTGAAAAGAATGGAGATTA-TTACTAGAATTC-ATGTTTGTCTTA
* * ** ** ** * **
3221808 TTTAAGGGATGAACTTTGATTTTA-AGGAAAA-T-AAGACAAAGAAAAGATTTCTAAGC-AAAAG
62 TTTAAGGCATGAACTTTGACTTTACA--AAAATTGGTGGGAAAGAAAACCTTTCT-TGCGAAACC
* * **
3221869 AAAGTCATC-ATAATCATTTA-CTCTAA-GAAGGAGAATG
124 AAA-TCATCAAT-ATCATGTATC-CTAATG-AGAAGAACA
* * * * * *
3221906 TGTTTATAGTACCTAATCATGAAAAGAATGAAGATTATTACTAGAATCCATGTTTGTCTCATTTG
1 TGTTTATAGTGCCTAATCCTGAAAAGAATGGAGATTATTACTAGAATTCATGTTTGTCTTATTTA
* *
3221971 AGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAA-AAAACCTTTCTTGCGAATCCAAATCAT
66 AGGCATGAACTTTGACTTTACAAAAATTGGTGGGAAAGAAAACCTTTCTTGCGAAACCAAATCAT
*
3222035 CAATATCATGTATTCTAATGAGAAG-ACAA
131 CAATATCATGTATCCTAATGAGAAGAAC-A
* * * * * *
3222064 TGTTTATAGTGCCTACTCCTGAAAAGAATGGGGATTA-GAATGAGTATTAATGTTTGTCTTATTT
1 TGTTTATAGTGCCTAATCCTGAAAAGAATGGAGATTATTACT-AGAATTCATGTTTGTCTTATTT
* * * * *
3222128 AAGAGACA--AAATTTGA-TTCTAACAAAAA-T-GTTGGAAAGAAAAGCTTTTCATGC-AATGCC
65 AAG-G-CATGAACTTTGACTT-T-ACAAAAATTGGTGGGAAAGAAAA-CCTTTCTTGCGAA-ACC
* * * *
3222187 AAAGCATCAATGTCATGTATCCTAACGA-AGGAA-A
124 AAATCATCAATATCATGTATCCTAATGAGAAGAACA
* * * * * * * * * * *
3222221 TGTGTTTTTGCT-CCCAATCTTGAAAAGAATAGAGACTATTACAAGAA-TCGAAGCTGGTTTTAT
1 TGT-TTATAG-TGCCTAATCCTGAAAAGAATGGAGATTATTACTAGAATTC-ATGTTTGTCTTAT
** * * * ** * * **
3222284 TTAAGGGTTGAACTTTGATTTTA-AGGAAAA-TAG-GGCAAAGAAAAGATTTTCATGCAAAAGAA
63 TTAAGGCATGAACTTTGACTTTACA--AAAATTGGTGGGAAAGAAAA-CCTTTCTTGCGAAACCA
* * * **
3222346 AATCATCAGTATCAT-TGATCCTAACGAGGAGAATG
125 AATCATCAATATCATGT-ATCCTAATGAGAAGAACA
* * * **
3222381 TGTTTGTAGTGCCCAATCAC--AAAATGAAT-GAGGATTATTACTAGAATGCAT-TTTAGTCTCG
1 TGTTTATAGTGCCTAATC-CTGAAAA-GAATGGA-GATTATTACTAGAATTCATGTTT-GTCTTA
* * * * * * * *
3222442 TTTAAGACATAAACTTAGACTTTACAAAAATTGGT-TGACAA-AGAGCCTTTCTTGTGAAACTAA
62 TTTAAGGCATGAACTTTGACTTTACAAAAATTGGTGGGA-AAGAAAACCTTTCTTGCGAAACCAA
* * * *
3222505 AGCTTCACTATCATGCATCCTAATGAGAAG-ACTA
126 ATCATCAATATCATGTATCCTAATGAGAAGAAC-A
** * * * * *
3222539 TG-TTACGGTGCATAATCCTAAAAAGAATGGTGATT-TGTA-TGAGTATCTACA--TTTGTGTTA
1 TGTTTATAGTGCCTAATCCTGAAAAGAATGGAGATTAT-TACT-AGAAT-T-CATGTTTGTCTTA
* * * * *
3222599 TTTAAGAGACA--AACATTGA-TTCTATCAAAAA--AGTTGGAAAGAAAAGCTTATTTTGC-AAC
62 TTTAAG-G-CATGAACTTTGACTT-TA-CAAAAATTGGTGGGAAAGAAAACCTT-TCTTGCGAA-
* * *
3222658 ACCGAAGT-GTCAATGTCATGTATCCTAATGA-AAGGAATC-
121 ACC-AAATCATCAATATCATGTATCCTAATGAGAA-GAA-CA
* * * * * * * * * * * * *
3222697 TGTTTTTTGTTCCCAATCTTGAAAAGATTAGAGACTGTTACGAGAATTGATGCTTATCTTATTT-
1 TGTTTATAGTGCCTAATCCTGAAAAGAATGGAGATTATTACTAGAATTCATGTTTGTCTTATTTA
* * * * * * ** * * ** *
3222761 AGGAAAGAACTTTGATTTTA-AGAAAAAT-ATGGCAAAGAAAAGATTTCCATGCAAAAGTAACTC
66 AGGCATGAACTTTGACTTTACA-AAAATTGGTGGGAAAGAAAACCTTT-CTTGCGAAACCAAATC
* * * * * **
3222824 ATCAATAACATTTATCCTAATAAGGACATTA
129 ATCAATATCATGTATCCTAATGAGAAGAACA
* * * * * *
3222855 TGTTTACAGTGCCTAATCAT-AAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT
1 TGTTTATAGTGCCTAATCCTGAAAA-GAATGGAGATTATTACTAGAATTCATGTTTGTCTTATTT
* * * * * * *** *
3222919 GAGGCACGAACTTAGACCTTAACAAAAATTGGTGGGAAA-AAATCCTTTCTTACGAGTTCAAAGC
65 AAGGCATGAACTTTGA-CTTTACAAAAATTGGTGGGAAAGAAAACCTTTCTTGCGAAACCAAATC
**
3222983 ATCAATATCATGTATCCTAAACAGAAG-ACTA
129 ATCAATATCATGTATCCTAATGAGAAGAAC-A
* ** * * * * *
3223014 TGTTTATGGTATCTAATCCTGAAACGAATAGG-GATTAGTA-TGGGTATTCATATTTGTCTTATT
1 TGTTTATAGTGCCTAATCCTGAAAAGAAT-GGAGATTATTACT-AGAATTCATGTTTGTCTTATT
3223077 TAAG
64 TAAG
3223081 AGACAAACAT
Statistics
Matches: 2437, Mismatches: 682, Indels: 540
0.67 0.19 0.15
Matches are distributed among these distances:
154 5 0.00
155 45 0.02
156 83 0.03
157 258 0.11
158 1031 0.42
159 889 0.36
160 108 0.04
161 18 0.01
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (159 bp):
TGTTTATAGTGCCTAATCCTGAAAAGAATGGAGATTATTACTAGAATTCATGTTTGTCTTATTTA
AGGCATGAACTTTGACTTTACAAAAATTGGTGGGAAAGAAAACCTTTCTTGCGAAACCAAATCAT
CAATATCATGTATCCTAATGAGAAGAACA
Found at i:3224313 original size:28 final size:26
Alignment explanation
Indices: 3224257--3224330 Score: 67
Period size: 28 Copynumber: 2.7 Consensus size: 26
3224247 GGAATAAAGC
**
3224257 CGGGGTTGGAGTATCCCCTCGGAGGTAA
1 CGGGGTTGGAGTAT--CCTCGGAAATAA
3224285 CGGGGTTGGAGTATCCTCGATGAAATAA
1 CGGGGTTGGAGTATCCTCG--GAAATAA
** *
3224313 CGAAGTTGAAGTATCCTC
1 CGGGGTTGGAGTATCCTC
3224331 AATTGTGAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
26 5 0.13
28 34 0.87
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.24
Consensus pattern (26 bp):
CGGGGTTGGAGTATCCTCGGAAATAA
Found at i:3224377 original size:51 final size:49
Alignment explanation
Indices: 3224311--3224482 Score: 157
Period size: 51 Copynumber: 3.4 Consensus size: 49
3224301 TCGATGAAAT
* * *
3224311 AACGAAGTTGAAGTATCCTCAATTGTGAAAATTGGTGTTTTTGGAAATAA
1 AACGGAGTTGGAGTATCCTCGATTGTGAAAATTGGTG-TTTTGGAAATAA
* *
3224361 AATCGGAGTTGGAGTATCCCCGATTAAAG-GAAAATTGGTGTTTTGAAAATAA
1 AA-CGGAGTTGGAGTATCCTCGATT---GTGAAAATTGGTGTTTTGGAAATAA
* * * * * *
3224413 AGCCGGGGCTGGAGTATCCTCGATTGTGGAAAATCGATGATTTGGAAATAA
1 A-ACGGAGTTGGAGTATCCTCGATTGT-GAAAATTGGTGTTTTGGAAATAA
*
3224464 AACTGGGGTTGGAGTATCC
1 AAC-GGAGTTGGAGTATCC
3224483 CCTCGGAGAT
Statistics
Matches: 99, Mismatches: 15, Indels: 15
0.77 0.12 0.12
Matches are distributed among these distances:
49 1 0.01
50 3 0.03
51 52 0.53
52 31 0.31
53 11 0.11
54 1 0.01
ACGTcount: A:0.33, C:0.11, G:0.27, T:0.29
Consensus pattern (49 bp):
AACGGAGTTGGAGTATCCTCGATTGTGAAAATTGGTGTTTTGGAAATAA
Found at i:3224426 original size:52 final size:51
Alignment explanation
Indices: 3224337--3224484 Score: 170
Period size: 51 Copynumber: 2.9 Consensus size: 51
3224327 CCTCAATTGT
* *
3224337 GAAAATTGGTGTTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTAAAG
1 GAAAATTGGTG-TTTTGGAAATAAAACCGGGGTTGGAGTATCCCCGATT-AAG
* * * * **
3224390 GAAAATTGGTGTTTTGAAAATAAAGCCGGGGCTGGAGTATCCTCGATTGTG
1 GAAAATTGGTGTTTTGGAAATAAAACCGGGGTTGGAGTATCCCCGATTAAG
* * * *
3224441 GAAAATCGATGATTTGGAAATAAAACTGGGGTTGGAGTATCCCC
1 GAAAATTGGTGTTTTGGAAATAAAACCGGGGTTGGAGTATCCCC
3224485 TCGGAGATAA
Statistics
Matches: 79, Mismatches: 16, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
51 37 0.47
52 31 0.39
53 11 0.14
ACGTcount: A:0.32, C:0.11, G:0.28, T:0.28
Consensus pattern (51 bp):
GAAAATTGGTGTTTTGGAAATAAAACCGGGGTTGGAGTATCCCCGATTAAG
Found at i:3224516 original size:79 final size:80
Alignment explanation
Indices: 3224416--3224595 Score: 222
Period size: 80 Copynumber: 2.3 Consensus size: 80
3224406 AAAATAAAGC
* * * * * *
3224416 CGGGGCTGGAGTATCCTCGATTGTG-GAAAATCGATGA-TTTGGAAATAAA-ACTGGGGTTGGAG
1 CGGGGTTGGAGTATCCCCGATTATGAG-AAATCAAT-ATTTTAGAAATAAAGACAGGGGTTGGAG
* *
3224478 TATCCCCTCGGAGATAA
64 TATCCCCTCGAAAATAA
* *
3224495 CGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTAGAAATAAAGCCAGGGGTTGGAGTA
1 CGGGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTTAGAAATAAAGACAGGGGTTGGAGTA
3224560 TCCCCTCGAAAATAA
66 TCCCCTCGAAAATAA
*
3224575 CGGGGTTGGAGAATCCCCGAT
1 CGGGGTTGGAGTATCCCCGAT
3224596 AATTAATTGA
Statistics
Matches: 87, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
78 1 0.01
79 39 0.45
80 47 0.54
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.25
Consensus pattern (80 bp):
CGGGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTTAGAAATAAAGACAGGGGTTGGAGTA
TCCCCTCGAAAATAA
Found at i:3227062 original size:21 final size:21
Alignment explanation
Indices: 3227037--3227086 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
3227027 GTAAACTTCC
3227037 TAGATGTATCGATACAAAGAA
1 TAGATGTATCGATACAAAGAA
*
3227058 TAGATGTATCGATACACAGAA
1 TAGATGTATCGATACAAAGAA
*
3227079 -AAATGTAT
1 TAGATGTAT
3227087 TGGTACATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 7 0.26
21 20 0.74
ACGTcount: A:0.46, C:0.10, G:0.18, T:0.26
Consensus pattern (21 bp):
TAGATGTATCGATACAAAGAA
Found at i:3227135 original size:13 final size:13
Alignment explanation
Indices: 3227117--3227168 Score: 50
Period size: 13 Copynumber: 3.5 Consensus size: 13
3227107 AGCTTCCTAG
3227117 CGATACATTGTAT
1 CGATACATTGTAT
3227130 CGATACAAAACTTATGTAT
1 CGATAC---A-TT--GTAT
3227149 CGATACATTGTAT
1 CGATACATTGTAT
3227162 CGATACA
1 CGATACA
3227169 ACACTTATGT
Statistics
Matches: 33, Mismatches: 0, Indels: 12
0.73 0.00 0.27
Matches are distributed among these distances:
13 17 0.52
15 2 0.06
16 2 0.06
17 2 0.06
19 10 0.30
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (13 bp):
CGATACATTGTAT
Found at i:3227149 original size:19 final size:19
Alignment explanation
Indices: 3227125--3227189 Score: 79
Period size: 19 Copynumber: 3.7 Consensus size: 19
3227115 AGCGATACAT
3227125 TGTATCGATACAAAACTTA
1 TGTATCGATACAAAACTTA
3227144 TGTATCGATAC---A--T-
1 TGTATCGATACAAAACTTA
*
3227157 TGTATCGATACAACACTTA
1 TGTATCGATACAAAACTTA
3227176 TGTATCGATACAAA
1 TGTATCGATACAAA
3227190 TCGCTGAAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 12
0.75 0.02 0.23
Matches are distributed among these distances:
13 11 0.28
14 1 0.03
16 2 0.05
18 1 0.03
19 24 0.62
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.32
Consensus pattern (19 bp):
TGTATCGATACAAAACTTA
Found at i:3227154 original size:32 final size:32
Alignment explanation
Indices: 3227117--3227187 Score: 133
Period size: 32 Copynumber: 2.2 Consensus size: 32
3227107 AGCTTCCTAG
3227117 CGATACATTGTATCGATACAAAACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
*
3227149 CGATACATTGTATCGATACAACACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
3227181 CGATACA
1 CGATACA
3227188 AATCGCTGAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.37, C:0.18, G:0.13, T:0.32
Consensus pattern (32 bp):
CGATACATTGTATCGATACAAAACTTATGTAT
Found at i:3227268 original size:21 final size:21
Alignment explanation
Indices: 3227244--3227301 Score: 107
Period size: 21 Copynumber: 2.8 Consensus size: 21
3227234 ACATTTGTAG
3227244 AATGTATCGATACATTCCACA
1 AATGTATCGATACATTCCACA
*
3227265 AATGTATTGATACATTCCACA
1 AATGTATCGATACATTCCACA
3227286 AATGTATCGATACATT
1 AATGTATCGATACATT
3227302 TGGATAAATT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.33
Consensus pattern (21 bp):
AATGTATCGATACATTCCACA
Found at i:3231224 original size:473 final size:473
Alignment explanation
Indices: 3228947--3231279 Score: 2663
Period size: 473 Copynumber: 4.9 Consensus size: 473
3228937 TTATTTAAGG
* * *
3228947 GATGCTTAACTTATTTAAGGGATCAACTTTGATTTTAAGGAAAATAGGGCATAGAAAAGATTTTC
1 GATGCTTATCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTC
*
3229012 ATGCAAAATAAAATCCTCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
66 ATGCAAAATAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * *
3229077 CAAAATGAATGAAGATCAGTACTAGAATCCATCTTTGTCTCATTTGAGGCTTGAACTTAGACTTT
131 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGC-CGAACTTAGACTTT
* * * * * *
3229142 ACAACAATTTGTGGGAAAAAGCCTTTCATGTGAAACAAAAGCATCAATATCATGTATCCTAATTA
195 ACAACAA-TTGGGGGAAAAAGCCTTTCTTGCGAAACAAAAGCGTCAATATCATGTATCCTTATGA
* * * * *
3229207 GAAGAATATGTTTGTGGTGCCTAATCCTAAAAAGAATAGGGATTTATATGAGTATTCATGTTTGT
259 GAAGACTATGTTTATGGTGCCTAATCTTAAAAAGAATGGGGATTTGTATGAGTATTCATGTTTGT
* * * * * * *
3229272 CTTATTTAAGAGACAAATTTTGATTCTATTAGAAACT-TTGGAAAGAACAGCTTTACATCCGATA
324 CTTATTTAAGAGACAAACTTTGATTCTATCA-AAAATGTTGGAAAGAAAAGCTTTTCTTGCGATA
* * *
3229336 CTAAAGCATCAA-GTCATGTATCATAATGAAGGGAATGTG-TTTTGGTTCCTAATCTTTAAAAGA
388 CCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGA
* ** * * *
3229399 ATGG-GAACCGTTTCAAGAATT
453 AAGGAG-ACTATTACGAGAATC
* *
3229420 GATGCTTATCTTATTTAAGGGATGAACTTTGATTTTAAGGTAAATAAGGCAAAGAAAAGATTTTC
1 GATGCTTATCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTC
* * * *
3229485 GTGCAAAATAAAATCGTTAATATCATTTATCCGAATGAGGAGAATGTGTTTATAGTGCCTAATCA
66 ATGCAAAATAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * * * *
3229550 CAAAATAAATTAAGATCAGTAGTAGAAT-C--------CTCATTTGAGGCCTGAACTTAAACTTT
131 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCC-GAACTTAGACTTT
* * * * * * * *
3229606 ATAATAATTTGTGGCAAAAGCCTTTCTTGCGAAACCAAAGCGTCAATATCATTTATCCTAATGAG
195 ACAACAATTGGGGGAAAAAGCCTTTCTTGCGAAACAAAAGCGTCAATATCATGTATCCTTATGAG
* * * *
3229671 AAGATTATGTTT-TGGGTGCTTAATCCTT-AAAAGAATGGGGATTTGTATGCGTGTTCATGTTTG
260 AAGACTATGTTTAT-GGTGCCTAAT-CTTAAAAAGAATGGGGATTTGTATGAGTATTCATGTTTG
* * * * * *
3229734 TCTTATTTAAAAGAAAAACTTTGATTTTATCAAAAATGTTAGAAAGAAAAGCTTTTCTTACGACA
323 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGTTGGAAAGAAAAGCTTTTCTTGCGATA
* * * *
3229799 TCGATGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCTAATCTTGAAAAAA
388 CCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGA
*
3229864 AAAGAGACTATTACGAGAATC
453 AAGGAGACTATTACGAGAATC
* * * * * *
3229885 GATGTTTGTATTATTTAAAGGAAT-AACTTTGATTTTAAGGTAAATAGAGCAAAGAAAAGATTTT
1 GATGCTTATCTTATTT-AAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTT
* * *
3229949 CATGCAAAAGAAAATCATCAATACCATTTATCCTAATGAGGAAAATGTGTTTATAGTGCCTAATC
65 CATGCAAAATAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC
* *
3230014 ACAAAATGAATGAAGAT-ATTTACCAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACT
130 ACAAAATGAATGAAGATCA-TTACTAGAATCCATGTTTGTCTCATTTGAGGC-CGAACTTAGACT
* * * * * * * *
3230078 TTACAAAAATTGGTTAGAAAAAAGCCTTTCTTGC-AAATCCAATG-ATCAATATCGTGTATTCTT
193 TTACAACAATTGG--GGGAAAAAGCCTTTCTTGCGAAA-CAAAAGCGTCAATATCATGTATCCTT
* * * * * * * *
3230141 ATGAGAAGACTATGTTTATGGTGCCTAATCTTCAAAGGATTAGGGATTAGTGTGGGTATTCAAGT
255 ATGAGAAGACTATGTTTATGGTGCCTAATCTTAAAAAGAATGGGGATTTGTATGAGTATTCATGT
* **
3230206 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCTAAAACCTTGGAAAGAAAAGCTTTTCTTGCG
320 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGTTGGAAAGAAAAGCTTTTCTTGCG
* * * * *
3230271 ACACTAAAGCATCAATGCCATGTATCGTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAA
385 ATACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCTAATCTTGAAA
* * * *
3230336 AGAATGGGGACTGTTATGAGAATC
450 AGAAAGGAGACTATTACGAGAATC
* * * *
3230360 GATGCTTATATTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGGCAAGGAAACGA---TC
1 GATGCTTATCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTC
* ** *
3230422 GTAAAAAATAAAATCATCAATATCATTTATCCTAATGAGGAGAATCTGTTTATAGTGCCTAATCA
66 ATGCAAAATAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * * *
3230487 CAAAATGGATGAAGATC-TGTACTAGAATCCATGTTTATCTCATTTGAGGCCTGAACATAAACTT
131 CAAAATGAATGAAGATCAT-TACTAGAATCCATGTTTGTCTCATTTGAGGCC-GAACTTAGACTT
** * * *
3230551 TACAACAATTTATGGGAAAAAGCCTTTCTT-AGAAACCAAAGCATCAATATCATGTATCCTTATG
194 TACAACAA-TTGGGGGAAAAAGCCTTTCTTGCGAAACAAAAGCGTCAATATCATGTATCCTTATG
* * * * ** * *
3230615 AGAAAACTATGTTTTTGGTGCTTAATCCTAAAAATTATGGGGATCTATATGAGTATTCATGTTTG
258 AGAAGACTATGTTTATGGTGCCTAATCTTAAAAAGAATGGGGATTTGTATGAGTATTCATGTTTG
* * * * * * * *
3230680 TCCTATTTAACAGACAAACTTTGCTTCTATCAAAAACGATGGAAAGAAATGCTTTTTTTGCGACA
323 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGTTGGAAAGAAAAGCTTTTCTTGCGATA
* * * * *
3230745 CCAAAGCATCAATGTCATGTATCCTATTAAAGGGAATGTGTTTTTGGTTACC-AAGCATGAAAAC
388 CCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTT-CCTAATCTTGAAAAG
*
3230809 AAAGGACACTATTACGAGAATC
452 AAAGGAGACTATTACGAGAATC
* * *
3230831 CATGCTTGTCTTATTTAAAGGATGAACTTTTG-TTTTAAGGAAAATAGGGCAAAGAAAAGATTTT
1 GATGCTTATCTTATTTAAGGGATGAAC-TTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTT
* * * *
3230895 CATG-AAAAGAAAATCATCAAT-TCCATTTATCCTAATGAGGGGATTGTGTTTATATTGCCTAAT
65 CATGCAAAATAAAATCATCAATAT-CATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT
* * * * *
3230958 CATAAAATGAATGAAGATCATTACCAGAATCCTTGTTTGGCTCATTTGACGCACGAACTTAGACT
129 CACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGC-CGAACTTAGACT
* * *
3231023 TTACAACAATTAGGGGGAAAAAGTCTTTCTTGCGAAACAAAAGTGTCAATATCGTGTATCCTTAT
193 TTACAACAATT-GGGGGAAAAAGCCTTTCTTGCGAAACAAAAGCGTCAATATCATGTATCCTTAT
* * *
3231088 GAGAAGACTATGTTTATGCTGCCTAATCTTGAAAAGAATGGGGATTTGTATGACTATTCATGTTT
257 GAGAAGACTATGTTTATGGTGCCTAATCTTAAAAAGAATGGGGATTTGTATGAGTATTCATGTTT
* * * * * * * **
3231153 GTTTTATTTAAGAGAAAAACTTTTATTCTATCATAAATGTCGGAAGGAAAAGC-GTTCTTGTAAT
322 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGTTGGAAAGAAAAGCTTTTCTTGCGAT
* * ** * *
3231217 GCCAAAGCATCAATGTCATGTATCTTAATGAAGAAAATGTGTTTGTGGTTCCCAATCTTGAAA
387 ACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCTAATCTTGAAA
3231280 CGAAGGGTTC
Statistics
Matches: 1561, Mismatches: 257, Indels: 84
0.82 0.14 0.04
Matches are distributed among these distances:
462 5 0.00
463 155 0.10
464 58 0.04
465 165 0.11
466 8 0.01
470 5 0.00
471 263 0.17
472 133 0.09
473 334 0.21
474 169 0.11
475 244 0.16
476 22 0.01
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.33
Consensus pattern (473 bp):
GATGCTTATCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTC
ATGCAAAATAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCCGAACTTAGACTTTA
CAACAATTGGGGGAAAAAGCCTTTCTTGCGAAACAAAAGCGTCAATATCATGTATCCTTATGAGA
AGACTATGTTTATGGTGCCTAATCTTAAAAAGAATGGGGATTTGTATGAGTATTCATGTTTGTCT
TATTTAAGAGACAAACTTTGATTCTATCAAAAATGTTGGAAAGAAAAGCTTTTCTTGCGATACCA
AAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAAAG
GAGACTATTACGAGAATC
Found at i:3233184 original size:475 final size:476
Alignment explanation
Indices: 3232150--3234699 Score: 2656
Period size: 475 Copynumber: 5.4 Consensus size: 476
3232140 TGTATCCTAA
** * * * *
3232150 CTTGAAAACTATGGAGAATATTATGAGAATCGATGCTTGTTTTATTTAAGGGATGAACTTTGATT
1 CTTGAAAAGAATGGAGACTATTACGAGAATCGAAGCTTGTCTTATTTAAGGGATGAACTTTGATT
* ** * * * ***
3232215 TGAAAAAAAATAAGACAAAGACAAGATTTCCTTGCAAAAGAAAATCAT-TGGATCATTTATCCTA
66 TTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTA
* * ** * * * *
3232279 ATGAGGTGAA-----ACACAGTGCCTAATCACAAAATAAATGCAGATCATTACTAGAATCCATGT
131 AAGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAACCATGT
* * * ** * *
3232339 TTAG-CTCATTTGACACACGAACTTAGGCTTTACAAAAATTGGGGGGAAGAAAGAGTTTCATGTA
196 TTAGTCTCATTTGACGCACGAACTTAGACTTTACAAAAATTGGGGGGAAAAAAGCCTTTCTTGCA
* * * * *
3232403 GAACCAAAGTATCAATATCGTGTATCCTTATGAGAAGA-TATGTTTATGGTGCCTAATCCTAAAA
261 AAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAA
** * * * * *
3232467 AG-A-GTCGGATAGGTATGAGTGTTCAT-TTTGTCTTGTCTAAAAGACAAAC-TTGATTCTATCA
326 AGAATGGGGGTTA-GTATGAGTATTCATATTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
*
3232528 AAAACGTTGGAAAGAAAAGCTATTT-TTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAA
390 AAAAAGTTGGAAAGAAAAGCT-TTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAAT-AA
* *
3232592 A-GGAATCTGTTTTTGGTCCCCAAT
453 AGGGAATGTG-TTTTGGTTCCCAAT
* * * * * * * *
3232616 CTTGAAAAAAACGTAGAATTTTATGAGAATCGATA-CTTGTTTTATTTTAGGGATGAACTTTGAT
1 CTTGAAAAGAATGGAGACTATTACGAGAATCGA-AGCTTGTCTTATTTAAGGGATGAACTTTGAT
* * * * **
3232680 TTTAAGGAAAATAAGTCAAA-AACAAGATTTCCTTGCAAAAGAAAAACATTAGGATCATTTATCC
65 TTTAAGGAAAATAAGGCAAAGAA-AAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCC
* * * * * *
3232744 TAATGAGGTGAATGTGTTTATAGTGCCTAGTCACAAAATGAAGGTAGATCATTAATAGAAACCAT
129 TAAAGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAACCAT
* * * * *
3232809 GTTTAG-CTCATTTAACGCACAAACATAGACTTTACCAAAATTGGGGGGAAGAAAGCCTTTCTTG
194 GTTTAGTCTCATTTGACGCACGAACTTAGACTTTACAAAAATTGGGGGGAAAAAAGCCTTTCTTG
* * * * * *
3232873 CAAAACCAAAGCATCAATGTCGTGTATCCTTATGAAAATACTATGTTTATGGTGCCTAAACCTGA
259 CAAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGA
* * * * * **
3232938 AAATAGTGGGGGTTAGTATGAGTGTTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTAAA
324 AAAGAATGGGGGTTAGTATGAGTATTCATATTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
* *
3233003 AAAAAAGTTGGAAA-AAAAACTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATAAA
389 AAAAAAGTTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATAAA
*
3233067 GGGAATGTGTTTTAGGTTCTCAAT
454 GGGAATGTGTTTT-GGTTCCCAAT
* * *
3233091 CTTGACAAA-AATGGAGACTATTACGAGAATCGAAGCTTATTTTATTTAAGGG-TGGAACTTTTA
1 CTTGA-AAAGAATGGAGACTATTACGAGAATCGAAGCTTGTCTTATTTAAGGGAT-GAACTTTGA
* * *
3233154 TTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAGTCATCAGTATCATTTATCC
64 TTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCC
* * * * * *
3233219 TAATGAGAAGAATGTGTTTATAGTG-CTCAATCACAAAATGGATGAAGATTATTACTAGAATCTA
129 TAAAGAGGAGAATGTGTTTATAGTGCCT-AATCACAAAATGAATGAAGATCATTACTAGAAACCA
* * * * * *
3233283 TGTGT-GTCTCATTTGA-GCCATGAACATAGACTTTACAAAAATTAGGGGGAAAAAAACTTTTCT
193 TGTTTAGTCTCATTTGACG-CACGAACTTAGACTTTACAAAAATTGGGGGGAAAAAAGCCTTTCT
** * * * * ** *
3233346 TGTGAAACCAAAGCATCAGTATCATTTATCCTAATGGGAA-AGCTACGTTTAAAGTGCATAATCC
257 TGCAAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGA-CTATGTTTATGGTGCCTAATCC
* * * * * *
3233410 TGAAAAGAATAGGGATTAGAATGAGTATTCATGTTTGTCTTATTAAAGAGAC-AGCTTTGATTCT
321 TGAAAAGAATGGGGGTTAGTATGAGTATTCATATTTGTCTTATTTAAGAGACAAACTTTGATTCT
* * * * *
3233474 ATCAAAAATGGTAGAAAGAAAAGCTTTTTTTGTAACACCAAAGCATCAATGTCATGTATCCTAA-
386 ATCAAAAAAGTTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAAT
*
3233538 AGAAGGGAAAGTGCTTTTGGTTCCCAAT
451 A-AAGGGAATGTG-TTTTGGTTCCCAAT
* * * * * * *
3233566 CCTGAAAAGAATAGAAATTATTATGAGAATC-AATACTTGTCTTATTTAAGGGATGAACTTTGTT
1 CTTGAAAAGAATGGAGACTATTACGAGAATCGAA-GCTTGTCTTATTTAAGGGATGAACTTTGAT
* * * * **
3233630 TTTAAGGAAAAT-AGGACAAAGAAAAGATTTCCAAGTAGAAGAAAATCATCAATATCTTTTGCCC
65 TTTAAGGAAAATAAGG-CAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCC
* * * * * * * *
3233694 TAAAGTGGAGAACGTGTTTATAATGCTTAATCACAAAATAAATGAAGATCAATCCTA-AAATCAA
129 TAAAGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAA-CCA
* * * * *
3233758 TG-TTAGTCTCATTTGAGGGACGAACTTAGACTATATAAAAATTGGTGGGAAAAAAGCCTTTCTT
193 TGTTTAGTCTCATTTGACGCACGAACTTAGACTTTACAAAAATTGGGGGGAAAAAAGCCTTTCTT
* * *
3233822 GCGAATCCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGATGCCTAATCCTG
258 GCAAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTG
* * *
3233887 AAAAGAATGGGGATTAGGATGAGTATTCATATTTGTCTTAGTTAAGAGACAAACTTTGATTCTAT
323 AAAAGAATGGGGGTTAGTATGAGTATTCATATTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * *
3233952 CAAAAAAGTTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCAACAATGTCATGTATCCTAGTGA
388 CAAAAAAGTTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATAA
* *
3234017 AGGGAATGGGTTTTTGGTTCCCATT
453 AGGGAATGTG-TTTTGGTTCCCAAT
* * * * * *
3234042 CTTGAAAAGAATGGAGACTGTTACAAGAATCGATGCTTGTCTTACTTAAGGGATGAACATTAATT
1 CTTGAAAAGAATGGAGACTATTACGAGAATCGAAGCTTGTCTTATTTAAGGGATGAACTTTGATT
* *
3234107 TTAAGGAAAATATGGCAAAGAAAAGATTTCCATGCCGAAA-AAAATCATCAATATCATTTATCCT
66 TTAAGGAAAATAAGGCAAAGAAAAGATTTCCATG-CAAAAGAAAATCATCAATATCATTTATCCT
* ** * * *
3234171 AAAGATGAGAATGTGTTTATA--G-----T----AAATGAACAAAGATCATTTCTAGAATCCTTG
130 AAAGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAACCATG
* * * * *
3234225 TTT-GTCTCATTTGAGGCACGAACTTAGACTTTACCAAAATTGGTGGGAAAAATGACTTT-TATG
195 TTTAGTCTCATTTGACGCACGAACTTAGACTTTACAAAAATTGGGGGGAAAAAAGCCTTTCT-TG
* * * *
3234288 CAAATCCAGAGTATACAA-ATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTG
259 CAAAACCAAAGCAT-CAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTG
* * * * * *
3234352 AAAAGAATCGGGGTTAGTTTGAGAATTCATATTTGTCTTATTAAAGAGACAAACATTGATTATAT
323 AAAAGAATGGGGGTTAGTATGAGTATTCATATTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * * *
3234417 CAAAAACGTTGGAAAGAAAAGCTTTT-TT-TACAGCACCAAAGCATCAATGTTATGTATCCTAAA
388 CAAAAAAGTTGGAAAGAAAAGCTTTTCTTGT-GA-CACCAAAGCATCAATGTCATGTATCCTAAT
*
3234480 AAAGGGAATGTGCTTTTGGTTCCTAAT
451 AAAGGGAATGTG-TTTTGGTTCCCAAT
* * * * * * ** *
3234507 CTTGAAAAGAATAGAGACTGTTACAAGAATCGATGCTGGTCTCACATAAGGGATGAACTTAGATT
1 CTTGAAAAGAATGGAGACTATTACGAGAATCGAAGCTTGTCTTATTTAAGGGATGAACTTTGATT
** * *
3234572 TTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCTGAAGAAAATCTTCAATATCATTTGTCCTA
66 TTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTA
*
3234637 AAGATGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAACACCA
131 AAGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAA-ACCA
3234700 AAGCATCAAT
Statistics
Matches: 1749, Mismatches: 275, Indels: 109
0.82 0.13 0.05
Matches are distributed among these distances:
463 1 0.00
464 7 0.00
465 391 0.22
466 104 0.06
467 26 0.01
469 1 0.00
472 129 0.07
473 25 0.01
474 66 0.04
475 727 0.42
476 265 0.15
477 7 0.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (476 bp):
CTTGAAAAGAATGGAGACTATTACGAGAATCGAAGCTTGTCTTATTTAAGGGATGAACTTTGATT
TTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTA
AAGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAACCATGT
TTAGTCTCATTTGACGCACGAACTTAGACTTTACAAAAATTGGGGGGAAAAAAGCCTTTCTTGCA
AAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAA
AGAATGGGGGTTAGTATGAGTATTCATATTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAA
AAAAGTTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATAAAGG
GAATGTGTTTTGGTTCCCAAT
Found at i:3234819 original size:245 final size:244
Alignment explanation
Indices: 3234450--3234938 Score: 658
Period size: 245 Copynumber: 2.0 Consensus size: 244
3234440 TTTTTTACAG
* * ** *
3234450 CACCAAAGCATCAATGTTATGTATCCTAAAAAAGGGAATGTGCTTTTGGTTCCTAATCTTGAAAA
1 CACCAAAGCATCAATGTCATGTATCCTAAAAAAGAGAATGCACTTTTGGTTCCTAATCTTCAAAA
* * *
3234515 GAATAGAGACTGTTACAAGAATCGATGCTGGTCTCACATAAGGGATGAACTTAGATTTTAAGGAA
66 GAATAGAGACTATTACAAGAATCGATGCTGGTCTCACATAAGAGATGAACTTAGATTTTAAAGAA
* * ** ** * * *
3234580 AATAAGGCAAAGAAAAGATTTCCATGCTGAAGAAAATCTTCAATATCATTTGTCCTAAAGATGAG
131 AACAAGGCAAAGAAAAGATTT-AATGCAAAAGAAAATCACCAATATCATTTATCCCAAAGAGGAG
3234645 AATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAA
195 AATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAA
** *
3234695 CACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGCATTTTTGGTTCCTAATCTTCAAAA
1 CACCAAAGCATCAATGTCATGTATCCTAAAAAAGAGAATGCACTTTTGGTTCCTAATCTTCAAAA
* * *** *
3234760 GAAT-GAGCACTATTACGAGAATCGATGCTTGTCT-TGTTCAAGAGATGAACTTTGATTTTAAAG
66 GAATAGAG-ACTATTACAAGAATCGATGCTGGTCTCACAT-AAGAGATGAACTTAGATTTTAAAG
* * *
3234823 AAAACAAGGCAAAGAAAAGATTTAATGGAAAAGAGAATCACCAATATCATTTATCCCAATGAGGA
129 AAAACAAGGCAAAGAAAAGATTTAATGCAAAAGAAAATCACCAATATCATTTATCCCAAAGAGGA
* *
3234888 GAATTTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCTTTACTAGAA
194 GAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAA
3234939 TCAATCTTTG
Statistics
Matches: 211, Mismatches: 31, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
244 84 0.40
245 127 0.60
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.28
Consensus pattern (244 bp):
CACCAAAGCATCAATGTCATGTATCCTAAAAAAGAGAATGCACTTTTGGTTCCTAATCTTCAAAA
GAATAGAGACTATTACAAGAATCGATGCTGGTCTCACATAAGAGATGAACTTAGATTTTAAAGAA
AACAAGGCAAAGAAAAGATTTAATGCAAAAGAAAATCACCAATATCATTTATCCCAAAGAGGAGA
ATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAA
Found at i:3235284 original size:718 final size:708
Alignment explanation
Indices: 3233984--3235394 Score: 1802
Period size: 718 Copynumber: 2.0 Consensus size: 708
3233974 TTTTCTTGTG
* * ** * *
3233984 ACACCAAAGCAACAATGTCATGTATCCTAGTGAAGGGAATGGGTTTTTGGTTCCCATTCTTGAAA
1 ACACCAAAGCAACAATGTCATGTATCCTAATGAAGAGAATGCATTTTTGGTTCCCAATCTTCAAA
* * *
3234049 AGAATGGAGACTGTTACAAGAATCGATGCTTGTCTTACTTAAGGGATGAACATTAATTTTAAGGA
66 AGAATGGAGACTATTACAAGAATCGATGCTTGTCTTACTTAAGAGATGAACATTAATTTTAAAGA
* * * * * *
3234114 AAATATGGCAAAGAAAAGATTTCCATGCCGAAAAAAATCATCAATATCATTTATCCTAAAGATGA
131 AAACAAGGCAAAGAAAAGATTTCAATG-CGAAAAAAATCACCAATATCATTTATCCCAAAGAGGA
** *
3234179 GAATGTGTTTATAGTAAATGAACAAAGATCATTTCTAGAATCCTTGTTTGTCTCATTTGAGGCAC
195 GAATGTGTTTATAGTAAATGAACAAAGATCATTTCTAGAATCAATCTTTGTCTCATTTGAGGCAC
* ** * * *
3234244 GAACTTAGACTTTACCAAAATTGGTGGGAAAAATGACTTTTATGCAAATCCAGAGTATACAAATC
260 GAACTTAGACTTTACAAAAATTAATGGGAAAAATAACTTTTATGCAAATCCAAAGCATACAAATC
* * *
3234309 ATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATCGGGGTTAGTTTGA
325 ATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATCGGGGTTAGTATGA
*
3234374 GAATTCATATTTGTCTTATTAAAGAGACAAACATTGATTATATCAAAAACGTTGGAAAGAAAAGC
390 GAATTCATATTTGTCTTATTAAAGAGACAAACATTGATTATATCAAAAACATTGGAAAGAAAAGC
* * * * *
3234439 TTTTTTTACAGCACCAAAGCATCAATGTTATGTATCCTAAAAAAGGGAATGTGCTTTTGGTTCCT
455 TTTTCTTACAACACCAAAGCATCAATGTCATCTATCCTAAAAAAGGGAATGTGCTTTTGGTTCCC
* *
3234504 AATCTTGAAAAGAATAGAGACTGTTACAAGAATCGATGCTGGTCTCACATAAGGGATGAACTTAG
520 AATCTTGAAAAGAATAGAGACTATCACAAGAATCGATGCTGGTCTCACATAAGGGATGAACTTAG
* * * *
3234569 ATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCTGAAGAAAATC-TTCAATATCATTTGT
585 ATTTTAAGGAAAATAAGGCAAACAAAAGATTTCCATGC-AAAAAAAATCATT-AATATCATTTAT
*
3234633 CCTAAAGATGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGA
648 CCTAAAGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGA
* *
3234694 ACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGCATTTTTGGTTCCTAATCTTCAAA
1 ACACCAAAGCAACAATGTCATGTATCCTAATGAAGAGAATGCATTTTTGGTTCCCAATCTTCAAA
* * * *
3234759 AGAAT-GAGCACTATTACGAGAATCGATGCTTGTCTT-GTTCAAGAGATGAACTTTGATTTTAAA
66 AGAATGGAG-ACTATTACAAGAATCGATGCTTGTCTTACTT-AAGAGATGAACATTAATTTTAAA
*
3234822 GAAAACAAGGCAAAGAAAAGATTT-AATG-GAAAAGAGAATCACCAATATCATTTATCCCAATGA
129 GAAAACAAGGCAAAGAAAAGATTTCAATGCGAAAA-A-AATCACCAATATCATTTATCCCAAAGA
* **
3234885 GGAGAATTTGTTTATAGTGCCTAATCACAAAATGAATGAAGATC-TTTACTAGAATCAATCTTTG
192 GGAGAATGTGTTTATA--G-----T----AAATGAACAAAGATCATTT-CTAGAATCAATCTTTG
*
3234949 TCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTAAT-GGAAAAA-AACTTTTCTTGCGAAA
245 TCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTAATGGGAAAAATAACTTTT-ATGC-AAA
* * *
3235012 -CCAAAGCAT-CGATATCATTTATCTTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAA
308 TCCAAAGCATAC-AAATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAA
* * * * * * * * *
3235075 GAAT-GGGTTTAGTATGAGTATTCATGTTTTTCTTATTTAAGAGACAAACTTTGGTTCTATCAAT
372 GAATCGGGGTTAGTATGAGAATTCATATTTGTCTTATTAAAGAGACAAACATTGATTATATCAAA
* * *
3235139 AACATTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATGAATGTCATCTATCCTAAATAAGGG
437 AACATTGGAAAGAAAAGCTTTTCTTACAACACCAAAGCATCAATGTCATCTATCCTAAAAAAGGG
* * * * * *
3235204 AATGTGCTTTTGGTTCCCAATCTTGAAAATAATGGA-ATCTATCACGAGAATTGATGCTTGTCTT
502 AATGTGCTTTTGGTTCCCAATCTTGAAAAGAATAGAGA-CTATCACAAGAATCGATGCTGGTCTC
** * * * *
3235268 ATTTAAGGGATGAACTTCGATTTTAAGGAAAATAGGGCCAACAAAAGATTTTCATGCAAAAAAAA
566 ACATAAGGGATGAACTTAGATTTTAAGGAAAATAAGGCAAACAAAAGATTTCCATGCAAAAAAAA
* **
3235333 TCATTAGTATCATTTATCCTAGTGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
631 TCATTAATATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
3235395 TTAGACTTTA
Statistics
Matches: 599, Mismatches: 81, Indels: 35
0.84 0.11 0.05
Matches are distributed among these distances:
707 5 0.01
708 1 0.00
709 46 0.08
710 128 0.21
711 1 0.00
716 1 0.00
717 61 0.10
718 219 0.37
719 71 0.12
720 66 0.11
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (708 bp):
ACACCAAAGCAACAATGTCATGTATCCTAATGAAGAGAATGCATTTTTGGTTCCCAATCTTCAAA
AGAATGGAGACTATTACAAGAATCGATGCTTGTCTTACTTAAGAGATGAACATTAATTTTAAAGA
AAACAAGGCAAAGAAAAGATTTCAATGCGAAAAAAATCACCAATATCATTTATCCCAAAGAGGAG
AATGTGTTTATAGTAAATGAACAAAGATCATTTCTAGAATCAATCTTTGTCTCATTTGAGGCACG
AACTTAGACTTTACAAAAATTAATGGGAAAAATAACTTTTATGCAAATCCAAAGCATACAAATCA
TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATCGGGGTTAGTATGAG
AATTCATATTTGTCTTATTAAAGAGACAAACATTGATTATATCAAAAACATTGGAAAGAAAAGCT
TTTCTTACAACACCAAAGCATCAATGTCATCTATCCTAAAAAAGGGAATGTGCTTTTGGTTCCCA
ATCTTGAAAAGAATAGAGACTATCACAAGAATCGATGCTGGTCTCACATAAGGGATGAACTTAGA
TTTTAAGGAAAATAAGGCAAACAAAAGATTTCCATGCAAAAAAAATCATTAATATCATTTATCCT
AAAGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGA
Found at i:3236641 original size:20 final size:20
Alignment explanation
Indices: 3236616--3236701 Score: 123
Period size: 20 Copynumber: 4.7 Consensus size: 20
3236606 TTTCAACGAT
3236616 TTGTATCGATACATAAAATG
1 TTGTATCGATACATAAAATG
3236636 TTGTATCGATAC----AA--
1 TTGTATCGATACATAAAATG
3236650 -TGTATCGATACATAAAATG
1 TTGTATCGATACATAAAATG
3236669 TTGTATCGATACATAAAATG
1 TTGTATCGATACATAAAATG
3236689 TTGTATCGATACA
1 TTGTATCGATACA
3236702 ATGTATCGAT
Statistics
Matches: 59, Mismatches: 0, Indels: 14
0.81 0.00 0.19
Matches are distributed among these distances:
13 11 0.19
16 2 0.03
17 2 0.03
20 44 0.75
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (20 bp):
TTGTATCGATACATAAAATG
Found at i:3236654 original size:33 final size:33
Alignment explanation
Indices: 3236617--3236681 Score: 130
Period size: 33 Copynumber: 2.0 Consensus size: 33
3236607 TTCAACGATT
3236617 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
3236650 TGTATCGATACATAAAATGTTGTATCGATACA
1 TGTATCGATACATAAAATGTTGTATCGATACA
3236682 TAAAATGTTG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.34
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:3236655 original size:13 final size:13
Alignment explanation
Indices: 3236637--3236661 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3236627 CATAAAATGT
3236637 TGTATCGATACAA
1 TGTATCGATACAA
3236650 TGTATCGATACA
1 TGTATCGATACA
3236662 TAAAATGTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3236696 original size:53 final size:53
Alignment explanation
Indices: 3236616--3236734 Score: 202
Period size: 53 Copynumber: 2.2 Consensus size: 53
3236606 TTTCAACGAT
3236616 TTGTATCGATACATAAAATGTTGTATCGATACAATGTATCGATACATAAAATG
1 TTGTATCGATACATAAAATGTTGTATCGATACAATGTATCGATACATAAAATG
*** *
3236669 TTGTATCGATACATAAAATGTTGTATCGATACAATGTATCGATACATATTTTT
1 TTGTATCGATACATAAAATGTTGTATCGATACAATGTATCGATACATAAAATG
3236722 TTGTATCGATACA
1 TTGTATCGATACA
3236735 ATTTAAGCTA
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
53 62 1.00
ACGTcount: A:0.36, C:0.12, G:0.14, T:0.38
Consensus pattern (53 bp):
TTGTATCGATACATAAAATGTTGTATCGATACAATGTATCGATACATAAAATG
Found at i:3236707 original size:33 final size:33
Alignment explanation
Indices: 3236670--3236736 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
3236660 CATAAAATGT
3236670 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
3236703 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
3236736 T
1 T
3236737 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:3236708 original size:13 final size:13
Alignment explanation
Indices: 3236690--3236714 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3236680 CATAAAATGT
3236690 TGTATCGATACAA
1 TGTATCGATACAA
3236703 TGTATCGATACA
1 TGTATCGATACA
3236715 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3236796 original size:13 final size:13
Alignment explanation
Indices: 3236778--3236802 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3236768 ATTACTCAAA
3236778 TGTATCGATACAT
1 TGTATCGATACAT
3236791 TGTATCGATACA
1 TGTATCGATACA
3236803 CCGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3236867 original size:52 final size:52
Alignment explanation
Indices: 3236811--3236931 Score: 215
Period size: 52 Copynumber: 2.3 Consensus size: 52
3236801 CACCGATCTT
*
3236811 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
* *
3236863 TGTATCGATACATGCAAGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
3236915 TGTATCGATACATGCAG
1 TGTATCGATACATGCAG
3236932 ATAAATTTTC
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 65 1.00
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:3243614 original size:31 final size:31
Alignment explanation
Indices: 3243573--3244164 Score: 239
Period size: 34 Copynumber: 18.9 Consensus size: 31
3243563 CTTCAAATAC
* *
3243573 CTTCTTAAAGTCCATGACTCCGTGGCACCTT
1 CTTCTCAAAGTCCACGACTCCGTGGCACCTT
* *
3243604 CTTCTCAAAGTCCACGACTCAGTGGCATCATT
1 CTTCTCAAAGTCCACGACTCCGTGGCA-CCTT
* * *
3243636 -TTCTTCAAAGTCCATGACTCAGTGGCA-ATCT
1 CTTC-TCAAAGTCCACGACTCCGTGGCACCT-T
*
3243667 CTGCTCAAAGTCCACGACTCCGTGGCACCTT
1 CTTCTCAAAGTCCACGACTCCGTGGCACCTT
* *
3243698 CCTT-TCAAAGCCCACAACTCCGTGGCACTCTT
1 -CTTCTCAAAGTCCACGACTCCGTGGCAC-CTT
* *
3243730 TTTCCCTTTTAAAGTCCACGACTCCGTGGCACCTT
1 CTT--C--TCAAAGTCCACGACTCCGTGGCACCTT
* * * *
3243765 CTTTTCAAAGCCCACAACTCCGTGGCACTTT
1 CTTCTCAAAGTCCACGACTCCGTGGCACCTT
* * *
3243796 TTTCATCTTTAAGTCCACAACTCCGTGGCACC--
1 CTTC-TC--AAAGTCCACGACTCCGTGGCACCTT
* * *
3243828 CTTCT--AAGCCCACAACTCCGTGGCACTTT
1 CTTCTCAAAGTCCACGACTCCGTGGCACCTT
* * *
3243857 TTTCATCTTTAAGTCCACAACTCCGTGGCACCTTTTT
1 CTTC-TC--AAAGTCCACGACTCCGTGGCACC---TT
* * * * * *
3243894 CTTTTTAAAGCCCACAACTCCATGGCACATTTTT
1 CTTCTCAAAGTCCACGACTCCGTGGCAC---CTT
* * *
3243928 CTTTTTAAAGCCCAC-AGCTCCGTGGCACTCTT
1 CTTCTCAAAGTCCACGA-CTCCGTGGCAC-CTT
** * *
3243960 -TTCCCGTTTAAGCCCACAACTCCGTGGCACC--
1 CTT--C-TCAAAGTCCACGACTCCGTGGCACCTT
* * *
3243991 CTT-T-TAAGTCCACAACTCAGTGGCACCTT
1 CTTCTCAAAGTCCACGACTCCGTGGCACCTT
* *
3244020 C-TCATCAAAGTCCACAACTTCGTGGCACC--
1 CTTC-TCAAAGTCCACGACTCCGTGGCACCTT
* * * *
3244049 CTT-TTAAAGCCCACAACTTCGTGGCACTCGTT
1 CTTCTCAAAGTCCACGACTCCGTGGCAC-C-TT
* *
3244081 -TTCCTTCTAAGTCCACAACTCCGTGGCACC--
1 CTT-C-TCAAAGTCCACGACTCCGTGGCACCTT
* *
3244111 CGTT-T--AAGCCCACAACTCCGTGGCACC--
1 C-TTCTCAAAGTCCACGACTCCGTGGCACCTT
*
3244138 CTT-T-TAAGTCCACGACTCCGTGGCACC
1 CTTCTCAAAGTCCACGACTCCGTGGCACC
3244165 CTTTTTTCCT
Statistics
Matches: 453, Mismatches: 58, Indels: 104
0.74 0.09 0.17
Matches are distributed among these distances:
26 3 0.01
27 83 0.18
28 24 0.05
29 7 0.02
30 5 0.01
31 124 0.27
32 45 0.10
33 3 0.01
34 127 0.28
35 6 0.01
36 22 0.05
37 4 0.01
ACGTcount: A:0.22, C:0.35, G:0.15, T:0.29
Consensus pattern (31 bp):
CTTCTCAAAGTCCACGACTCCGTGGCACCTT
Found at i:3243678 original size:63 final size:62
Alignment explanation
Indices: 3243574--3243693 Score: 179
Period size: 63 Copynumber: 1.9 Consensus size: 62
3243564 TTCAAATACC
* *
3243574 TTCTTAAAGTCCATGACTCCGTGGCACCTTCTTCTCAAAGTCCACGACTCAGTGGCATCATT
1 TTCTTAAAGTCCATGACTCAGTGGCACCTTCTGCTCAAAGTCCACGACTCAGTGGCATCATT
* *
3243636 TTCTTCAAAGTCCATGACTCAGTGGCA-ATCTCTGCTCAAAGTCCACGACTCCGTGGCA
1 TTCTT-AAAGTCCATGACTCAGTGGCACCT-TCTGCTCAAAGTCCACGACTCAGTGGCA
3243694 CCTTCCTTTC
Statistics
Matches: 52, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
62 6 0.12
63 46 0.88
ACGTcount: A:0.23, C:0.31, G:0.17, T:0.28
Consensus pattern (62 bp):
TTCTTAAAGTCCATGACTCAGTGGCACCTTCTGCTCAAAGTCCACGACTCAGTGGCATCATT
Found at i:3243752 original size:67 final size:66
Alignment explanation
Indices: 3243673--3243989 Score: 366
Period size: 68 Copynumber: 4.8 Consensus size: 66
3243663 ATCTCTGCTC
* *
3243673 AAAGTCCACGACTCCGTGGCACCTTCCTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTC-CCT
1 AAAGTCCACAACTCCGTGGCACCTTCCTTTCAAAGCCCACAACTCCGTGGCACT-TTTTTCATC-
3243737 TTT
64 TTT
* *
3243740 AAAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTTTTTTCATCTT
1 AAAGTCCACAACTCCGTGGCACCTTCCTTTCAAAGCCCACAACTCCGTGGCACTTTTTTCATCTT
3243805 T
66 T
*
3243806 -AAGTCCACAACTCCGTGGCA-C--CC-TTCTAAGCCCACAACTCCGTGGCACTTTTTTCATCTT
1 AAAGTCCACAACTCCGTGGCACCTTCCTTTCAAAGCCCACAACTCCGTGGCACTTTTTTCATCTT
3243866 T
66 T
* * * *
3243867 -AAGTCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCATGGCACATTTTTC-T
1 AAAGTCCACAACTCCGTGGCACC---TTCCTTTCAAAGCCCACAACTCCGTGGCACTTTTTTCAT
*
3243930 TTTT
63 CTTT
* *
3243934 AAAGCCCACAGCTCCGTGGCACTCTTTTCCCGTTT--AAGCCCACAACTCCGTGGCAC
1 AAAGTCCACAACTCCGTGGCAC-C--TT-CC-TTTCAAAGCCCACAACTCCGTGGCAC
3243990 CCTTTTAAGT
Statistics
Matches: 223, Mismatches: 15, Indels: 23
0.85 0.06 0.09
Matches are distributed among these distances:
61 57 0.26
62 2 0.01
64 1 0.00
65 19 0.09
66 9 0.04
67 59 0.26
68 71 0.32
69 2 0.01
70 3 0.01
ACGTcount: A:0.21, C:0.35, G:0.14, T:0.30
Consensus pattern (66 bp):
AAAGTCCACAACTCCGTGGCACCTTCCTTTCAAAGCCCACAACTCCGTGGCACTTTTTTCATCTT
T
Found at i:3243814 original size:34 final size:33
Alignment explanation
Indices: 3243705--3244230 Score: 279
Period size: 34 Copynumber: 16.6 Consensus size: 33
3243695 CTTCCTTTCA
*
3243705 AAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
1 AAGCCCACAACTCCGTGGCACT-TTTTTCTC-TTT
* * * *
3243740 AAAGTCCACGACTCCGTGGCACCTTCTTT-TC--A
1 -AAGCCCACAACTCCGTGGCA-CTTTTTTCTCTTT
3243772 AAGCCCACAACTCCGTGGCACTTTTTTCATCTTT
1 AAGCCCACAACTCCGTGGCACTTTTTTC-TCTTT
*
3243806 AAGTCCACAACTCCGTGGCAC------C-CTTCT
1 AAGCCCACAACTCCGTGGCACTTTTTTCTCTT-T
3243833 AAGCCCACAACTCCGTGGCACTTTTTTCATCTTT
1 AAGCCCACAACTCCGTGGCACTTTTTTC-TCTTT
* * *
3243867 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTT
1 AAGCCCACAACTCCGTGGCACTTTTTTCTCTTT
* * *
3243900 AAAGCCCACAACTCCATGGCACATTTTTCTTTTT
1 -AAGCCCACAACTCCGTGGCACTTTTTTCTCTTT
* * *
3243934 AAAGCCCACAGCTCCGTGGCACTCTTTTCCCGTTT
1 -AAGCCCACAACTCCGTGGCACTTTTTTCTC-TTT
*
3243969 AAGCCCACAACTCCGTGGCAC-----CCT-TTT
1 AAGCCCACAACTCCGTGGCACTTTTTTCTCTTT
* * * **
3243996 AAGTCCACAACTCAGTGGCAC---CTTCTCATCA
1 AAGCCCACAACTCCGTGGCACTTTTTTCTC-TTT
* * *
3244027 AAGTCCACAACTTCGTGGCAC-----CCT-TTT
1 AAGCCCACAACTCCGTGGCACTTTTTTCTCTTT
* *
3244054 AAAGCCCACAACTTCGTGGCACTCGTTTTC-CTTCT
1 -AAGCCCACAACTCCGTGGCACT-TTTTTCTCTT-T
*
3244089 AAGTCCACAACTCCGTGGCAC------C-CGTTT
1 AAGCCCACAACTCCGTGGCACTTTTTTCTC-TTT
*
3244116 AAGCCCACAACTCCGTGGCAC-----CCT-TTT
1 AAGCCCACAACTCCGTGGCACTTTTTTCTCTTT
* *
3244143 AAGTCCACGACTCCGTGGCACCCTTTTTTC-CTTT
1 AAGCCCACAACTCCGTGGCA--CTTTTTTCTCTTT
* *
3244177 AAAGCCCACAACTACGTGGCACTCTTTTC-CTTTT
1 -AAGCCCACAACTCCGTGGCACTTTTTTCTC-TTT
* * *
3244211 AAGTCCACAAGTCGGTGGCA
1 AAGCCCACAACTCCGTGGCA
3244231 ACCTTCTTCT
Statistics
Matches: 396, Mismatches: 52, Indels: 87
0.74 0.10 0.16
Matches are distributed among these distances:
26 3 0.01
27 88 0.22
28 24 0.06
29 6 0.02
30 6 0.02
31 38 0.10
32 2 0.01
33 29 0.07
34 151 0.38
35 25 0.06
36 22 0.06
37 2 0.01
ACGTcount: A:0.21, C:0.35, G:0.14, T:0.30
Consensus pattern (33 bp):
AAGCCCACAACTCCGTGGCACTTTTTTCTCTTT
Found at i:3243859 original size:61 final size:63
Alignment explanation
Indices: 3243673--3244203 Score: 339
Period size: 61 Copynumber: 8.4 Consensus size: 63
3243663 ATCTCTGCTC
* *
3243673 AAAGTCCACGACTCCGTGGCACCTTCCTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTT
1 AAAGTCCACAACTCCGTGGCACC-T-CTTTCAAAGCCCACAACTCCGTGGCACT-TTTTTCTC-T
3243738 TT
62 TT
*
3243740 AAAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCGTGGCACTTTTTTCATCTT
1 AAAGTCCACAACTCCGTGGCACC-TC-TTTCAAAGCCCACAACTCCGTGGCACTTTTTTC-TCTT
3243805 T
63 T
*
3243806 -AAGTCCACAACTCCGTGGCACC-C-TTCTAAGCCCACAACTCCGTGGCACTTTTTTCATCTTT
1 AAAGTCCACAACTCCGTGGCACCTCTTTCAAAGCCCACAACTCCGTGGCACTTTTTTC-TCTTT
* * * *
3243867 -AAGTCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCATGGCACATTTTTCTT
1 AAAGTCCACAACTCCGTGGCACC----TC-TTTCAAAGCCCACAACTCCGTGGCACTTTTTTCTC
3243931 TTT
61 TTT
* * *
3243934 AAAGCCCACAGCTCCGTGGCA-CTCTTTTCCCGTTTAAGCCCACAACTCCGTGGCAC------C-
1 AAAGTCCACAACTCCGTGGCACCTC-TTT--C---AAAGCCCACAACTCCGTGGCACTTTTTTCT
3243991 CTTT
60 CTTT
* * * * * *
3243995 TAAGTCCACAACTCAGTGGCACCTTCTCATCAAAGTCCACAACTTCGTGGCAC-----CCT-TTT
1 AAAGTCCACAACTCCGTGGCACC-TCT-TTCAAAGCCCACAACTCCGTGGCACTTTTTTCTCTTT
* * * * *
3244054 AAAGCCCACAACTTCGTGGCACTCGTTTTCCTTCTAAGTCCACAACTCCGTGGCAC------C-C
1 AAAGTCCACAACTCCGTGGCAC-C----TCTTTCAAAGCCCACAACTCCGTGGCACTTTTTTCTC
3244112 GTTT
61 -TTT
* * * *
3244116 -AAGCCCACAACTCCGTGGCACC-CTTT-TAAGTCCACGACTCCGTGGCACCCTTTTTTC-CTTT
1 AAAGTCCACAACTCCGTGGCACCTCTTTCAAAGCCCACAACTCCGTGGCA--CTTTTTTCTCTTT
* *
3244177 AAAGCCCACAACTACGTGGCA-CTCTTT
1 AAAGTCCACAACTCCGTGGCACCTCTTT
3244204 TCCTTTTAAG
Statistics
Matches: 394, Mismatches: 34, Indels: 77
0.78 0.07 0.15
Matches are distributed among these distances:
54 20 0.05
55 3 0.01
56 1 0.00
58 19 0.05
59 22 0.06
60 2 0.01
61 105 0.27
62 53 0.13
63 13 0.03
65 21 0.05
66 11 0.03
67 58 0.15
68 66 0.17
ACGTcount: A:0.21, C:0.35, G:0.14, T:0.29
Consensus pattern (63 bp):
AAAGTCCACAACTCCGTGGCACCTCTTTCAAAGCCCACAACTCCGTGGCACTTTTTTCTCTTT
Found at i:3243996 original size:27 final size:27
Alignment explanation
Indices: 3243966--3244169 Score: 203
Period size: 27 Copynumber: 7.1 Consensus size: 27
3243956 TCTTTTCCCG
*
3243966 TTTAAGCCCACAACTCCGTGGCACCCT
1 TTTAAGTCCACAACTCCGTGGCACCCT
*
3243993 TTTAAGTCCACAACTCAGTGGCA-CCT
1 TTTAAGTCCACAACTCCGTGGCACCCT
*
3244019 TCTCATCAAAGTCCACAACTTCGTGGCACCCT
1 T-T--T--AAGTCCACAACTCCGTGGCACCCT
* *
3244051 TTTAAAGCCCACAACTTCGTGGCACTCGTTTTCCT
1 TTT-AAGTCCACAACTCCGTGGCA--C-----CCT
* *
3244086 TCTAAGTCCACAACTCCGTGGCACCCG
1 TTTAAGTCCACAACTCCGTGGCACCCT
*
3244113 TTTAAGCCCACAACTCCGTGGCACCCT
1 TTTAAGTCCACAACTCCGTGGCACCCT
*
3244140 TTTAAGTCCACGACTCCGTGGCACCCT
1 TTTAAGTCCACAACTCCGTGGCACCCT
3244167 TTT
1 TTT
3244170 TTCCTTTAAA
Statistics
Matches: 150, Mismatches: 14, Indels: 26
0.79 0.07 0.14
Matches are distributed among these distances:
26 4 0.03
27 76 0.51
28 20 0.13
29 2 0.01
30 1 0.01
31 19 0.13
32 5 0.03
34 18 0.12
35 5 0.03
ACGTcount: A:0.22, C:0.36, G:0.15, T:0.26
Consensus pattern (27 bp):
TTTAAGTCCACAACTCCGTGGCACCCT
Found at i:3244106 original size:62 final size:61
Alignment explanation
Indices: 3243930--3244250 Score: 295
Period size: 62 Copynumber: 5.2 Consensus size: 61
3243920 ACATTTTTCT
* *
3243930 TTTTAAAGCCCACAGCTCCGTGGCACTCTTTTCCCGTT-TAAGCCCACAACTCCGTGGCACCC
1 TTTTAAAGCCCACAACTCCGTGGCACTCTTTT-CC-TTCTAAGTCCACAACTCCGTGGCACCC
* * * * * *
3243992 TTTT-AAGTCCACAACTCAGTGGCAC-CTTCT-CATCAAAGTCCACAACTTCGTGGCACCC
1 TTTTAAAGCCCACAACTCCGTGGCACTCTTTTCCTTCTAAGTCCACAACTCCGTGGCACCC
*
3244050 TTTTAAAGCCCACAACTTCGTGGCACTCGTTTTCCTTCTAAGTCCACAACTCCGTGGCACCC
1 TTTTAAAGCCCACAACTCCGTGGCACTC-TTTTCCTTCTAAGTCCACAACTCCGTGGCACCC
* * *
3244112 GTTT-AAGCCCACAACTCCGTGGCA--C----CCTTTTAAGTCCACGACTCCGTGGCACCC
1 TTTTAAAGCCCACAACTCCGTGGCACTCTTTTCCTTCTAAGTCCACAACTCCGTGGCACCC
* * * *
3244166 TTTTTTCCTTTAAAGCCCACAACTACGTGGCACTCTTTTCCTTTTAAGTCCACAAGTCGGTGGCA
1 -----T--TTTAAAGCCCACAACTCCGTGGCACTCTTTTCCTTCTAAGTCCACAACTCCGTGGC-
3244231 ACCTTC
58 ACC--C
*
3244237 TTCTAAAGCCCACA
1 TTTTAAAGCCCACA
3244251 CAAGTCGGTG
Statistics
Matches: 212, Mismatches: 25, Indels: 42
0.76 0.09 0.15
Matches are distributed among these distances:
54 27 0.13
57 1 0.00
58 26 0.12
59 19 0.09
60 5 0.02
61 43 0.20
62 51 0.24
64 13 0.06
66 1 0.00
68 22 0.10
69 3 0.01
71 1 0.00
ACGTcount: A:0.22, C:0.35, G:0.15, T:0.28
Consensus pattern (61 bp):
TTTTAAAGCCCACAACTCCGTGGCACTCTTTTCCTTCTAAGTCCACAACTCCGTGGCACCC
Found at i:3244142 original size:89 final size:89
Alignment explanation
Indices: 3244031--3244198 Score: 232
Period size: 89 Copynumber: 1.9 Consensus size: 89
3244021 TCATCAAAGT
* * * *
3244031 CCACAACTTCGTGGCACCCTTTTAAAGCCCACAACTTCGTGGCACTC-GTTTTCCTTCT-AAGTC
1 CCACAACTCCGTGGCACCCTTTT-AAGCCCACAACTCCGTGGCACCCTGTTTTCCTT-TAAAGCC
*
3244094 CACAACTCCGTGGCACCCGTTTAAGC
64 CACAACTACGTGGCACCCGTTTAAGC
* * *
3244120 CCACAACTCCGTGGCACCCTTTTAAGTCCACGACTCCGTGGCACCCTTTTTTCCTTTAAAGCCCA
1 CCACAACTCCGTGGCACCCTTTTAAGCCCACAACTCCGTGGCACCCTGTTTTCCTTTAAAGCCCA
3244185 CAACTACGTGGCAC
66 CAACTACGTGGCAC
3244199 TCTTTTCCTT
Statistics
Matches: 69, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
88 20 0.29
89 49 0.71
ACGTcount: A:0.21, C:0.37, G:0.15, T:0.26
Consensus pattern (89 bp):
CCACAACTCCGTGGCACCCTTTTAAGCCCACAACTCCGTGGCACCCTGTTTTCCTTTAAAGCCCA
CAACTACGTGGCACCCGTTTAAGC
Found at i:3244195 original size:35 final size:33
Alignment explanation
Indices: 3244137--3244220 Score: 105
Period size: 35 Copynumber: 2.5 Consensus size: 33
3244127 TCCGTGGCAC
* * *
3244137 CCTTTTAAGTCCACGACTCCGTGGCACCCTTTTTT
1 CCTTTTAAGTCCACAACTACGTGGCA--CTCTTTT
* *
3244172 CCTTTAAAGCCCACAACTACGTGGCACTCTTTT
1 CCTTTTAAGTCCACAACTACGTGGCACTCTTTT
3244205 CCTTTTAAGTCCACAA
1 CCTTTTAAGTCCACAA
3244221 GTCGGTGGCA
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
33 20 0.48
35 22 0.52
ACGTcount: A:0.21, C:0.33, G:0.12, T:0.33
Consensus pattern (33 bp):
CCTTTTAAGTCCACAACTACGTGGCACTCTTTT
Found at i:3244229 original size:33 final size:33
Alignment explanation
Indices: 3244137--3244230 Score: 100
Period size: 33 Copynumber: 2.8 Consensus size: 33
3244127 TCCGTGGCAC
* *
3244137 CCTTTTAAGTCCACGACTCCGTGGCACCCTTTTTT
1 CCTTTTAAGTCCACAACT-CGTGGCA-CCTCTTTT
* *
3244172 CCTTTAAAGCCCACAACTACGTGGCA-CTCTTTT
1 CCTTTTAAGTCCACAACT-CGTGGCACCTCTTTT
*
3244205 CCTTTTAAGTCCACAAGTCGGTGGCA
1 CCTTTTAAGTCCACAACTC-GTGGCA
3244231 ACCTTCTTCT
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
32 1 0.02
33 27 0.54
35 22 0.44
ACGTcount: A:0.20, C:0.32, G:0.16, T:0.32
Consensus pattern (33 bp):
CCTTTTAAGTCCACAACTCGTGGCACCTCTTTT
Found at i:3244282 original size:32 final size:33
Alignment explanation
Indices: 3244216--3244336 Score: 210
Period size: 33 Copynumber: 3.7 Consensus size: 33
3244206 CTTTTAAGTC
3244216 CACAAGTCGGTGGCAA-CCTTCTTCTAAAGCCCA
1 CACAAGTCGGTGGCAACCCTTC-TCTAAAGCCCA
3244249 CACAAGTCGGTGGCAACCCTTCTC-AAAGCCCA
1 CACAAGTCGGTGGCAACCCTTCTCTAAAGCCCA
*
3244281 CACAAGTCGGTGGCAACCATTCTCTAAAGCCCA
1 CACAAGTCGGTGGCAACCCTTCTCTAAAGCCCA
3244314 CACAAGTCGGTGGCAACCCTTCT
1 CACAAGTCGGTGGCAACCCTTCT
3244337 AAGCCCAATA
Statistics
Matches: 84, Mismatches: 2, Indels: 4
0.93 0.02 0.04
Matches are distributed among these distances:
32 31 0.37
33 48 0.57
34 5 0.06
ACGTcount: A:0.27, C:0.35, G:0.19, T:0.19
Consensus pattern (33 bp):
CACAAGTCGGTGGCAACCCTTCTCTAAAGCCCA
Found at i:3244291 original size:65 final size:63
Alignment explanation
Indices: 3244216--3244343 Score: 222
Period size: 65 Copynumber: 2.0 Consensus size: 63
3244206 CTTTTAAGTC
3244216 CACAAGTCGGTGGCAACC-TTCTTCTAAAGCCCACACAAGTCGGTGGCAACCCTTCTCAAAGCCC
1 CACAAGTCGGTGGCAACCATTC-TCTAAAGCCCACACAAGTCGGTGGCAACCCTTCT--AAGCCC
3244280 A
63 A
3244281 CACAAGTCGGTGGCAACCATTCTCTAAAGCCCACACAAGTCGGTGGCAACCCTTCTAAGCCCA
1 CACAAGTCGGTGGCAACCATTCTCTAAAGCCCACACAAGTCGGTGGCAACCCTTCTAAGCCCA
3244344 ATATAGCTGG
Statistics
Matches: 62, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
63 7 0.11
65 52 0.84
66 3 0.05
ACGTcount: A:0.28, C:0.35, G:0.19, T:0.18
Consensus pattern (63 bp):
CACAAGTCGGTGGCAACCATTCTCTAAAGCCCACACAAGTCGGTGGCAACCCTTCTAAGCCCA
Found at i:3244394 original size:49 final size:49
Alignment explanation
Indices: 3244336--3244943 Score: 777
Period size: 49 Copynumber: 12.7 Consensus size: 49
3244326 GCAACCCTTC
* *
3244336 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
*
3244385 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
3244428 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
3244477 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
*
3244526 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
3244569 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
3244618 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * * * *
3244667 TAAGTCCAATGTAGCTGGCCTTGACTCAACACATTGGCACCTTCACCAT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * * *
3244716 TAAGTCCAATGTAGCTAGCCTTGACTCAGCATATTGGCACCTTCACCAT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * * * *
3244765 TAAGTCCAATGTAGCTGGCCTTTAATCAGTACATTAGCACC-TCACCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* **
3244813 TAAGTCCAATGTAGCTGGCTTTGAATCAGCACCTTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
3244856 TAAGTCCAATATAGCTGGCCTTGAATTAGCATATTGGCACCTTTTCCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACC--TT-CATCTT
* *
3244908 TAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTG
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTG
3244944 ACATCCTTTT
Statistics
Matches: 493, Mismatches: 45, Indels: 39
0.85 0.08 0.07
Matches are distributed among these distances:
43 115 0.23
45 3 0.01
47 2 0.00
48 40 0.08
49 297 0.60
50 1 0.00
52 35 0.07
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.31
Consensus pattern (49 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
Found at i:3244493 original size:92 final size:92
Alignment explanation
Indices: 3244331--3244899 Score: 604
Period size: 92 Copynumber: 6.1 Consensus size: 92
3244321 CGGTGGCAAC
*
3244331 CCTTCTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATG
1 CCTT-TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATG
3244396 TAGCTGGCCTTGAATCAGCACATTGGCA
65 TAGCTGGCCTTGAATCAGCACATTGGCA
*
3244424 CCTTTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
*
3244489 AGCTGGCCTTGAATCAGCATATTGGCA
66 AGCTGGCCTTGAATCAGCACATTGGCA
* *
3244516 CCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTTTAAGTC
1 ----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTC
* * *
3244575 CAATATCGCTGGCCTTGAATCAGCATATTGGCA
60 CAATGTAGCTGGCCTTGAATCAGCACATTGGCA
*
3244608 CCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTC
1 ----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTC
* *
3244673 CAATGTAGCTGGCCTTGACTCAACACATTGGCA
60 CAATGTAGCTGGCCTTGAATCAGCACATTGGCA
* * * * *
3244706 CCTTCACCATTAAGTCCAATGTAGCTAGCCTTGACTCAGCATATTGGCACCTTCACCATTAAGTC
1 CC-T-----TTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTC
* * *
3244771 CAATGTAGCTGGCCTTTAATCAGTACATTAGCACCTCA
60 CAATGTAGCTGGCCTTGAATCAGCACATT-G----GCA
* * ** *
3244809 CCTTTAAGTCCAATGTAGCTGGCTTTGAATCAGCACCTTGGCA----C--CTTTAAGTCCAATAT
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
* *
3244868 AGCTGGCCTTGAATTAGCATATTGGCA
66 AGCTGGCCTTGAATCAGCACATTGGCA
3244895 CCTTT
1 CCTTT
3244900 TCCATCTTTA
Statistics
Matches: 416, Mismatches: 37, Indels: 53
0.82 0.07 0.10
Matches are distributed among these distances:
86 7 0.02
90 1 0.00
91 32 0.08
92 175 0.42
93 6 0.01
94 2 0.00
96 1 0.00
97 35 0.08
98 151 0.36
99 1 0.00
102 1 0.00
103 4 0.01
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (92 bp):
CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
AGCTGGCCTTGAATCAGCACATTGGCA
Found at i:3244595 original size:141 final size:141
Alignment explanation
Indices: 3244336--3244943 Score: 921
Period size: 141 Copynumber: 4.3 Consensus size: 141
3244326 GCAACCCTTC
* *
3244336 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
*
3244401 GGCCTTGAATCAGCACATTGGCACCTTTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGC
66 GGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGC
3244466 ACCTTCATCTT
131 ACCTTCATCTT
3244477 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
*
3244542 GGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGC
66 GGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGC
3244607 ACCTTCATCTT
131 ACCTTCATCTT
* *
3244618 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
* * * * *
3244683 GGCCTTGACTCAACACATTGGCACCTTCACCATTAAGTCCAATGTAGCTAGCCTTGACTCAGCAT
66 GGCCTTGAATCAGCACATTGGCACC-T-----TTAAGTCCAATATAGCTGGCCTTGAATCAGCAT
* *
3244748 ATTGGCACCTTCACCAT
125 ATTGGCACCTTCATCTT
* * * * *
3244765 TAAGTCCAATGTAGCTGGCCTTTAATCAGTACATTAGCACC-TCACCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
* * *
3244829 GGCTTTGAATCAGCACCTTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATTAGCATATTGGC
66 GGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGC
3244894 ACCTTTTCCATCTT
131 ACC--TT-CATCTT
* *
3244908 TAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTG
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTG
3244944 ACATCCTTTT
Statistics
Matches: 423, Mismatches: 35, Indels: 16
0.89 0.07 0.03
Matches are distributed among these distances:
140 38 0.09
141 223 0.53
142 3 0.01
143 36 0.09
145 1 0.00
146 42 0.10
147 80 0.19
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.31
Consensus pattern (141 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
GGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGC
ACCTTCATCTT
Found at i:3244923 original size:52 final size:55
Alignment explanation
Indices: 3244853--3245065 Score: 180
Period size: 52 Copynumber: 3.7 Consensus size: 55
3244843 ACCTTGGCAC
* * *
3244853 CTTTAAGTCCAATATAGCTGGCCTTGAATTAGCATATTGGCA-CC-TTTTC-CAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* *
3244905 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* * * * * *
3244960 CTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCACTTTTCTCATCTTC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATT-G-A-C---ATC-C-TTT-T--TC-TC
3245025 AT
54 AT
* *
3245027 CTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTG
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTG
3245066 GCACCTTCAT
Statistics
Matches: 128, Mismatches: 18, Indels: 16
0.79 0.11 0.10
Matches are distributed among these distances:
52 37 0.29
53 2 0.02
54 5 0.04
55 33 0.26
56 1 0.01
57 1 0.01
58 1 0.01
61 3 0.02
62 1 0.01
63 3 0.02
64 1 0.01
66 3 0.02
67 37 0.29
ACGTcount: A:0.24, C:0.23, G:0.15, T:0.38
Consensus pattern (55 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
Found at i:3245064 original size:67 final size:68
Alignment explanation
Indices: 3244956--3245082 Score: 184
Period size: 67 Copynumber: 1.9 Consensus size: 68
3244946 ATCCTTTTTC
* * *
3244956 TCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCA-CTTTTCTCA
1 TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
3245020 TCT
66 TCT
* * * *
3245023 TCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTCATCATCTTT
1 TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTT
3245083 AAAACCCAAT
Statistics
Matches: 52, Mismatches: 7, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
67 48 0.92
68 4 0.08
ACGTcount: A:0.24, C:0.25, G:0.13, T:0.39
Consensus pattern (68 bp):
TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
TCT
Found at i:3248177 original size:468 final size:461
Alignment explanation
Indices: 3247157--3248692 Score: 1798
Period size: 468 Copynumber: 3.3 Consensus size: 461
3247147 CGACACTTAC
* * * *
3247157 GAAACCAAAGCATCAATATCATTTATCCTAATAAAAAGACTATGTTTATGGTGCCTAATCCTGAA
1 GAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGAGCCTAATCCTGAA
* * * * * *
3247222 AAGAATGCGAAATAGTATGAGCATTCTTGTTTGTCTTATTAAAGAGACAAACATTGATTCTATCA
66 AAGAATGGGGATTAGTATGAGCATTCATGTTTGTCTTATTAAAGAGACAAACTTTGATTCTATTA
* * * *
3247287 AAAACGGTAGAAAAAAAGCTTTTTTTGCGACACCAAAGCATCAATGTCATGTATCCTAAAGAAAG
131 AAAAC-GTGGAAAAAAAGGTTTTTTCGTGACACCAAAGCATCAATGTCATGTATCCT-AAGAAAG
* * * **
3247352 GAATGCGCTTTTGGTTCCTAATTTTGAAATGAATGGAGACTGTTATGAGAATCGATGCTTGTCTT
194 GAATGTGCTTTTGGTTCCTAATCTTGAAA-AAATGGAGACTGTTACAAGAATCGATGCTTGTCTT
* * * *
3247417 ATTTAAGAGATGAACTTTGACTTTAAGGAAAATAGGTAAAGAAAAGATTTCCATATCGAAGAAAA
258 ATTTAAG-GATGAACTTTGATTTTAAGGAAAATAGGCAAAGAGAAGATTTCCAT-GCGAAGAAAA
* * **
3247482 TCATAAATATCATTTA-CCTAAAGACGAGAATGTATTTATAGTGCCTAATCACAAAATGAACAAA
321 TCATCAATATCATTTATCCTAAAGACGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAA
* *
3247546 GATCATTACTAGAATCCATGTTTGCCTCATTTGAGGCACAAACTTAAACTATACAAAAATTGGTG
386 GATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAC-GACTT----T-TACAAAAATTGGTG
*
3247611 GGAAAAAAGCCTTTCTTGT
445 GG--AAAAGCCTTTCTTGA
* * *
3247630 GAATA-CAAAGCATCAATATCATTTATCCTAATGAGAAGACTATGTTTACGGTGCCTAAT-CTAG
1 GAA-ACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGAGCCTAATCCT-G
* * * *
3247693 AAAAGAATGTGGATTAGTATGAGCATTCATGTTTGTCTTGTTAAAGATACAAACTTTTATTCTAT
64 AAAAGAATGGGGATTAGTATGAGCATTCATGTTTGTCTTATTAAAGAGACAAACTTTGATTCTAT
3247758 TAAAAACAGTGGAAAGAAAAGGTTTTTTCGTGACACCAAAGCATCAATGTCATGTATCCTACAG-
129 TAAAAAC-GTGGAAA-AAAAGGTTTTTTCGTGACACCAAAGCATCAATGTCATGTATCCTA-AGA
* * * *
3247822 AAGGAAATGTGCTTTTGGTTCTTAATCTTGAAAAAATGGAGACTGTTACAATAATCAATGCTGGT
191 AAGG-AATGTGCTTTTGGTTCCTAATCTTGAAAAAATGGAGACTGTTACAAGAATCGATGCTTGT
* * *
3247887 CTTACTTAATGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAGAACATTTTCATGCCGAAG
255 CTTATTTAA-GGATGAACTTTGATTTTAAGGAAAAT-AGGCAAAGAGAAGATTTCCATG-CGAAG
* * *
3247952 AAAATCATCAATATCATTTATCCTAAAGATGAGAATGTGTTTATAGTTCCTAATCACAAAAAGAA
317 AAAATCATCAATATCATTTATCCTAAAGACGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* ** *
3248017 TGAAGATCATTACTAGAATCCATGTTTGTCTAATTTGAGGCACGA-TTTTACAAAAATTTATGTG
382 TGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGACTTTTACAAAAATTGGTGGG
*
3248081 ATAAAGGCCTTTCTAGA
447 A-AAA-GCCTTTCTTGA
* *
3248098 GAAACCAAAGCATTAATATCATGTATCTTAATGAGAAGACTATGTTTATGGAGCCTAATCCTGAA
1 GAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGAGCCTAATCCTGAA
** * * *
3248163 AAGAATGGGGATTAGTATGAGTTTTCATGTTTTTCTTATTTAAGAGATAAACTTTGATTCTATTA
66 AAGAATGGGGATTAGTATGAGCATTCATGTTTGTCTTATTAAAGAGACAAACTTTGATTCTATTA
* * *
3248228 AAAACGTTGGAAATAAAA-G-TTTTTCTTG-CAACACGAAGCTTCAATGTCATGTATCCTAACGA
131 AAAACG-TGGAAA-AAAAGGTTTTTTCGTGAC-AC-CAAAGCATCAATGTCATGTATCCTAA-GA
* * * * * *
3248290 AAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGATTGGTA-ACTGTTACCAGCATCGATACTTG
191 AAGGAATGTGCTTTTGGTTCCTAATCTTGAAAA-AATGG-AGACTGTTACAAGAATCGATGCTTG
* * * *
3248354 TCTTATTTAAGGGATGAACTTTGGTTTTAAGAAAAATTAGGCAAAGAGAAGATTTCCAAGAGAAA
254 TCTTATTTAA-GGATGAACTTTGATTTTAAGGAAAA-TAGGCAAAGAGAAGATTTCCATGCG-AA
** * * *
3248419 GAAAATCATCAATATCATTTATCCTAGTGAGGAGAATGTGTTTATAGTGCCAAATCACAAAGTGA
316 GAAAATCATCAATATCATTTATCCTAAAGACGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
* * *
3248484 ATGAAGATTATTACAAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAAT
381 ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACG-AC-T----TTTACAAAAAT
*
3248549 TGGTGGGAAAAGCCTTTCTTGC
440 TGGTGGGAAAAGCCTTTCTTGA
* * *
3248571 GAATCCAAAGCATTAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTA-CCTAATCCTGA
1 GAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGG-AGCCTAATCCTGA
* ** * * * *
3248635 AAAAAATGGGGATTAGTATGAGTTTTCACGCTTT-TCTTCTTTAAGAGATAAACTTTGA
65 AAAGAATGGGGATTAGTATGAGCATTCATG-TTTGTCTTATTAAAGAGACAAACTTTGA
3248693 GGCATAAATT
Statistics
Matches: 926, Mismatches: 106, Indels: 62
0.85 0.10 0.06
Matches are distributed among these distances:
465 1 0.00
466 12 0.01
467 57 0.06
468 325 0.35
469 6 0.01
471 1 0.00
472 2 0.00
473 308 0.33
474 119 0.13
475 95 0.10
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.32
Consensus pattern (461 bp):
GAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGAGCCTAATCCTGAA
AAGAATGGGGATTAGTATGAGCATTCATGTTTGTCTTATTAAAGAGACAAACTTTGATTCTATTA
AAAACGTGGAAAAAAAGGTTTTTTCGTGACACCAAAGCATCAATGTCATGTATCCTAAGAAAGGA
ATGTGCTTTTGGTTCCTAATCTTGAAAAAATGGAGACTGTTACAAGAATCGATGCTTGTCTTATT
TAAGGATGAACTTTGATTTTAAGGAAAATAGGCAAAGAGAAGATTTCCATGCGAAGAAAATCATC
AATATCATTTATCCTAAAGACGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGACTTTTACAAAAATTGGTGGGAAAAGCCTT
TCTTGA
Found at i:3249435 original size:152 final size:151
Alignment explanation
Indices: 3249210--3249515 Score: 359
Period size: 152 Copynumber: 2.0 Consensus size: 151
3249200 ACAAACTTAG
* * * *
3249210 ACTTTACAAAAATTGGTAGGAAAAAGGCCTTTATTGTGAATCTAAAGTGTCAATATCATGTATCC
1 ACTTTACAAAAATTGG-AGGAAAAAAGCCTTTATTGTAAAACCAAAGTGTCAATATCATGTATCC
* * * * * *
3249275 TGACGAGAAAACTATGTTTACGATGCCTAATCCTTAAAAGAA-TGAGGATTTGTATGAGTATTCA
65 TGACGAGAAAACTATGTTTACGATACCTAATCCTAAAAAGAACAG-GGATTAGAATGACTATTCA
*
3249339 TGTTTGTCTTATTTAATAGACAA
129 TGTTTGTCTTATTTAAGAGACAA
* *
3249362 ACTTTACAAAAATTAGG-GGAAAAAAAGCCTTTCTTGTAAAACCAAAG-GCTCAATATCGTGTAT
1 ACTTTACAAAAATT-GGAGG-AAAAAAGCCTTTATTGTAAAACCAAAGTG-TCAATATCATGTAT
* * * *
3249425 CCTTG-TGAGAAGACTATGTTTATGGTACCTAATCCTAAAAAGAACAGGGATTAGAATGACTATT
63 CC-TGACGAGAAAACTATGTTTACGATACCTAATCCTAAAAAGAACAGGGATTAGAATGACTATT
* *
3249489 TATGTTTGTCTTATTTAAGGGACAA
127 CATGTTTGTCTTATTTAAGAGACAA
3249514 AC
1 AC
3249516 ATTAATTCTA
Statistics
Matches: 130, Mismatches: 19, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
151 3 0.02
152 122 0.94
153 5 0.04
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.32
Consensus pattern (151 bp):
ACTTTACAAAAATTGGAGGAAAAAAGCCTTTATTGTAAAACCAAAGTGTCAATATCATGTATCCT
GACGAGAAAACTATGTTTACGATACCTAATCCTAAAAAGAACAGGGATTAGAATGACTATTCATG
TTTGTCTTATTTAAGAGACAA
Found at i:3250309 original size:473 final size:473
Alignment explanation
Indices: 3249362--3250663 Score: 1681
Period size: 473 Copynumber: 2.7 Consensus size: 473
3249352 TAATAGACAA
* * *
3249362 ACTTTACAAAAATTAGG-GGAAAAAAAGCCTTTCTTGTAAAACCAAAGGC-TCAATATCGTGTAT
1 ACTTTACAAAAATT-GGTGGGAAAAAAGCCTTTCTTGTGAAACCAAA-GCATCAATATCATGTAT
** * * * * *
3249425 CCTTGTGAGAAGACTATGTTTATGGTACCTAATCCTAAAAAGAACA-GGGATTAGAATGACTATT
64 CCTAATGCGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAA-AGGGGATTTGTATGAGTATT
* * * * * * *
3249489 TATGTTTGTCTTATTTAAGGGACAAACATTAATTCTATCAAAAACGATGGAAAGAAACGCATTTC
128 CATGTTTATCTTATTTAAGAGACAAACTTTGATTCTGTCAAAAACGTTGGAAAGAAA-GCATTTC
* * * * * * *
3249554 CTAC-ACCACCAACGTATCAATGTCATGTATCCTAATGAATGGAATGCGTTTTTGGTTCTCAATC
192 TTGCGA-CACCAAAGCATCAATGACATGTATCCTAATGAAGGGAATGTGTTTTTGGTTC-CAATC
* ** * * * * *
3249618 TTGAAAAGTTTAGAGACTGTTACGAGAATCAATGCTTGTTTTTTTTATGGGATGAACTTTGATTT
255 TTGAAATGAATGGAGACTGTTATGAGAATCGATGCTTGGTTTTTTTAAGGGATGAACTTTGATTT
* ***
3249683 TAAGGAAAATAGGGCAAAGAAAAGATTTCTATGCAAAGTAAAATCATTGGTATCATTTATCCTAG
320 TAA-GAAAATAGGGCAAAGAAAAGATTTCCATGCAAAGTAAAATCATCAATATCATTTATCCTAG
* **
3249748 TGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTT
384 TGAAGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAAACATGTT
* *
3249813 TGTCTTATTTGAGGAACGAACTTAG
449 AGTCTCATTTGAGGAACGAACTTAG
* * *
3249838 ACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAGAGCATCAATATCTTGTATCC
1 ACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCATGTATCC
*
3249903 TAATGCGAAAACTATGTTTATGGTGCCTAATCCTAAAAAGAAAGGGGATTTGTATGAGTATTCAT
66 TAATGCGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAAAGGGGATTTGTATGAGTATTCAT
*
3249968 GTTTATCTTATTTAAGAGACAAACTTTGATTCTGT-AAAAACCGTTGGAAACAAAGCATTTCTTG
131 GTTTATCTTATTTAAGAGACAAACTTTGATTCTGTCAAAAA-CGTTGGAAAGAAAGCATTTCTTG
* * * *
3250032 CGACACCAAAGCATCGATGACATGTATCCTAAAGAAGGGAATGTGTTTTTGGTTACCATTCTTGG
195 CGACACCAAAGCATCAATGACATGTATCCTAATGAAGGGAATGTGTTTTTGGTT-CCAATCTTGA
*
3250097 AATGAATGGAGACTGTTATGAGAATCGATGCTTGGTTTATTTAAGGGATGAACTTT-AGTTTTAA
259 AATGAATGGAGACTGTTATGAGAATCGATGCTTGGTTTTTTTAAGGGATGAACTTTGA-TTTTAA
* * *
3250161 CATAATAGGGCAAAGAAAA-AGTTCCATGCAAAAG-AAAATCATCAATATCATTTATCCTACG-G
323 GAAAATAGGGCAAAGAAAAGATTTCCATGC-AAAGTAAAATCATCAATATCATTTATCCTA-GTG
3250223 AAGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAAACATGTTAG
386 AAGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAAACATGTTAG
* *
3250288 TCTCATTTGAGGCATGAACTTAG
451 TCTCATTTGAGGAACGAACTTAG
* *
3250311 ACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGTGAACCCAAAGCATCCATATCATGTATCC
1 ACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCATGTATCC
* * * *
3250376 TAATGCGAAGACTATGTTTACGATGCCTAATCCTTAAAAGAATGGGGATTTGTATGAGTATTCAT
66 TAATGCGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAAAGGGGATTTGTATGAGTATTCAT
* * * * * * *
3250441 GTTTATCTTTTTTAACACATAAACTTTGATTCGGTCAAAAATGTTGGAAAGAAAGACTTTTCTTG
131 GTTTATCTTATTTAAGAGACAAACTTTGATTCTGTCAAAAACGTTGGAAAGAAAG-CATTTCTTG
* * * * *
3250506 TGACACCAAAGCATCAATTA-ATGTATCTTAATGAAGGGAAAGTGTTTTTTGTTCCAAATCTTGA
195 CGACACCAAAGCATCAATGACATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCC-AATCTTGA
* *
3250570 AATGAATGGAGACTATTATGAGAATTGATGCTT-GTCTTTTTTAAGGGATGAACTTTGATTTTAA
259 AATGAATGGAGACTGTTATGAGAATCGATGCTTGGT-TTTTTTAAGGGATGAACTTTGATTTT-A
* *
3250634 AGAAAATAAGGCAAAGAAAATATTTCCATG
322 AGAAAATAGGGCAAAGAAAAGATTTCCATG
3250664 TAGAGAATGT
Statistics
Matches: 721, Mismatches: 89, Indels: 33
0.86 0.11 0.04
Matches are distributed among these distances:
472 4 0.01
473 363 0.50
474 72 0.10
475 131 0.18
476 151 0.21
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (473 bp):
ACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCATGTATCC
TAATGCGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAAAGGGGATTTGTATGAGTATTCAT
GTTTATCTTATTTAAGAGACAAACTTTGATTCTGTCAAAAACGTTGGAAAGAAAGCATTTCTTGC
GACACCAAAGCATCAATGACATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCAATCTTGAAA
TGAATGGAGACTGTTATGAGAATCGATGCTTGGTTTTTTTAAGGGATGAACTTTGATTTTAAGAA
AATAGGGCAAAGAAAAGATTTCCATGCAAAGTAAAATCATCAATATCATTTATCCTAGTGAAGAG
AATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAAACATGTTAGTCTCA
TTTGAGGAACGAACTTAG
Found at i:3251070 original size:440 final size:448
Alignment explanation
Indices: 3249752--3252025 Score: 1991
Period size: 473 Copynumber: 4.9 Consensus size: 448
3249742 TCCTAGTGAG
*
3249752 GAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTC
1 GAGAATGTG-TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGGC
* * * * * *
3249817 TTATTTGAGGAACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCA
65 TCATTTGATGCACGAACTTAGACTTTACAAGAATTGG-GGGGAAAAAGCCTCTCTTGCGAAACCA
* * *
3249882 GAGCATCAATATCTTGTATCC-TA-ATGCGAAAACTATGTTTATGGTGCCTAATCCTAAAAAGAA
129 AAGCATCAATATCTTGTATCCTTATAAG-GAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAA
* * *
3249945 -AGGGGATTTGTATGAGTATTCATGTTTATCTTATTTAAGAGACAAACTTTGATTCTGT-AAAAA
193 TA-GGGATTTGTATGAGTATTCATGTTTGTCTTATTTAACAGACAAACTTTGATTCTATCAAAAA
* * * * * * * * *
3250008 CCGTTGG-AAACAAAGCATTTCTTGCGACACCAAAGCATCGATGACATGTATCCTAAAGAAGGGA
257 -TGGTGGAAAAGAAATCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGA
* * * * * * * *
3250072 ATGTGTTTTTGGTTACC-ATTCTTGGAATGAATGGAGACTGTTATGAGAATCGATGCTTGGT-TT
321 ATGGGTTTTTGGTT-CCTAATCTTGAAAGGAATGGAGACTATTACGAGAATTGATGCTT-ATCTT
*
3250135 ATTTAAGGGATGAACTTT-AGTTTTAACATAATAGGGCAAAGAAAAAGTTCCATGCAAAAGAAAA
384 ATTTAAAGGATGAACTTTGA-TTTT---A-AA-A-GG--AA-AAAAAG-----TGCAAAAG----
* *
3250199 TCATCAATATCATTTATCCTACGGAA
430 --A--AA-ATCA-TTATCC-ATGTAA
** * *
3250225 GAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAAACATGTTAGTC
1 GAGAATGTG-TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGGC
* * * * * * *
3250290 TCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGTGAACCCA
65 TCATTTGATGCACGAACTTAGACTTTACAAGAATTGG-GGGGAAAAAGCCTCTCTTGCGAAACCA
* * * * * *
3250355 AAGCATCCATATCATGTATCC-TA-ATGCGAAGACTATGTTTACGATGCCTAATCCTTAAAAGAA
129 AAGCATCAATATCTTGTATCCTTATAAG-GAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAA
* * * * * **
3250418 TGGGGATTTGTATGAGTATTCATGTTTATCTTTTTTAACACATAAACTTTGATTCGGTCAAAAAT
193 TAGGGATTTGTATGAGTATTCATGTTTGTCTTATTTAACAGACAAACTTTGATTCTATCAAAAAT
* * * * * *
3250483 GTTGG-AAAGAAAGACTTTTCTTGTGACACCAAAGCATCAAT-TAATGTATCTTAATGAAGGGAA
258 GGTGGAAAAGAAA-TCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAA
* * * * * * * *
3250546 AGTGTTTTTTGTTCCAAATCTTGAAATGAATGGAGACTATTATGAGAATTGATGCTTGTCTTTTT
322 TGGGTTTTTGGTTCCTAATCTTGAAAGGAATGGAGACTATTACGAGAATTGATGCTTATCTTATT
* *
3250611 TAAGGGATGAACTTTGATTTT-AAA-GAAAATAAG-GC-AAAGAAAAT-ATT-TCCATGT-A
387 TAAAGGATGAACTTTGATTTTAAAAGGAAAAAAAGTGCAAAAGAAAATCATTATCCATGTAA
* *
3250666 GAGAATGTGTTATAGTGCCTAATAACATAATGAATGAAGATCATTACTAGAATCCATGTTTGGCT
1 GAGAATGTGTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGGCT
*
3250731 CATTTGATGCACAAACTTAGACTTTACAAGAATTGGGGGGAAAAAGCCTCTCTTGCGAAACCAAA
66 CATTTGATGCACGAACTTAGACTTTACAAGAATTGGGGGGAAAAAGCCTCTCTTGCGAAACCAAA
* *
3250796 GCATCAATATTTTGTATCCTTATAAGGAA-ACTATGTTTGTGGTGCCTAATCCTAAAAAGAATAG
131 GCATCAATATCTTGTATCCTTATAAGGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATAG
*
3250860 GGATTTGTCTGAGTATTCATGTTTGTCTTATTT-ACAAGACAAACTTTGATTCTATCAAAAATGG
196 GGATTTGTATGAGTATTCATGTTTGTCTTATTTAAC-AGACAAACTTTGATTCTATCAAAAATGG
* * *
3250924 TAGAAAAGAAATCTTTTCTTGCGACCCCAAACCATCAATGTCATGTATCCTAAAT-AAGAGAATG
260 TGGAAAAGAAATCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT-AATGAAGAGAATG
* * * * * *
3250988 GGCTTTTGGTTCCTAATCTTGAATGGAATGGAGACTGTTACAAGAATCGATTCTTATCTTATTTA
324 GGTTTTTGGTTCCTAATCTTGAAAGGAATGGAGACTATTACGAGAATTGATGCTTATCTTATTTA
** *
3251053 AAGGACAAACTTTGATTTTAAGGAAAATAGGGCAAAAAAAAGATTTTCATATAGAAGAAAATCAT
389 AAGGATGAACTTTGATTTT-----AAA-A-GG--AAAAAAAG---TGC--A-A-AAGAAAATCAT
*
3251118 TAATATCATTTGTCTTAATAA
438 T-AT-CCA--TG------TAA
* * * * *
3251139 GGAGAATGTTTTTATAGTACCTAATCACAAAATGAATGAAAATCATTACTAGAATCCATTTTTGT
1 -GAGAATG-TGTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGG
* * * * * * * * * *
3251204 CTTATTTAATACAGGAACATT-GACTTTATAA-AATTTGGTGAGAAAAACCCTTTCTTACGAAAC
64 CTCATTTGATGCACGAAC-TTAGACTTTACAAGAA-TTGGGGGGAAAAAGCCTCTCTTGCGAAAC
* * * *
3251267 AAAAGCATCAATATCTTTTATCCTAATGAA--AAGACTATCTTTATTGG-GCCTAATCCTAAAAA
127 CAAAGCATCAATATCTTGTATCCTTAT-AAGGAAGACTATGTTTA-TGGTGCCTAATCCTAAAAA
* * ** ** * * *
3251329 TAATAGGGATTATCAGTATGAGTATTCATGTTAGTCTTATTTAGGAGATGAACTTTCAATCTACC
190 GAATAGGGATT-T--GTATGAGTATTCATGTTTGTCTTATTTAACAGACAAACTTTGATTCTATC
* * * * * *
3251394 AAAAACGGGGGAAAAAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATATATCCTAATGAA
252 AAAAATGGTGGAAAAGAAATCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAA
* * * * * * * *
3251459 G-GAAATGTGG-TTTTGGTTCCTAATCTTAAAAAGATTGGAAACTGTTATGAGAATTGATGGTTG
317 GAG-AATG-GGTTTTTGGTTCCTAATCTTGAAAGGAATGGAGACTATTACGAGAATTGATGCTTA
**
3251522 TCTTATTTATGGGATGAACTTTGATTTTAAGGAAAATTGGGGAAAGAAAAGATTTCCATGCAAAA
380 TCTTATTTAAAGGATGAACTTTGATTTT----AAAA----GGAAA-AAAAG-------TGCAAAA
* *
3251587 GAAAATCATCAATATCATTTATCCTAA
429 GAAAATCAT---TATC---CAT-GTAA
* * *
3251614 TGACGAGAATGTGTTATAATGCCTAATCACATAATGAATGAAGACCATTACTAGAATCCATGTTT
1 ----GAGAATGTGTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
**
3251679 GGCTCATTTGATGCACG-ACTTAGACTTTACAAGAATTAAGGGGAAGAAAGCCTCTCTTGCGAAA
62 GGCTCATTTGATGCACGAACTTAGACTTTACAAGAATTGGGGGGAA-AAAGCCTCTCTTGCGAAA
* *
3251743 CCAAAGCATCAATATCGTGTATCCTTATAAGGAA-ACTATGTTTATGGTGCCTAATCCTGAAAAG
126 CCAAAGCATCAATATCTTGTATCCTTATAAGGAAGACTATGTTTATGGTGCCTAATCCTAAAAAG
** * * * * *
3251807 AATAGGGATTTGTATGAACATTCTTGTTTGTCTTATTTAAGAGACAAAATTTAATTCTATCCAAA
191 AATAGGGATTTGTATGAGTATTCATGTTTGTCTTATTTAACAGACAAACTTTGATTCTATCAAAA
* *
3251872 ATGGTGGAAAAGAAATCTTTTTTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGA
256 ATGGTGGAAAAGAAATCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGA
* *
3251937 ATGGGTTTTTGGTTCCTAATCTTGAAAGGAATGGAGTCTATTGCGAGAATTGATGCTTATCTTAT
321 ATGGGTTTTTGGTTCCTAATCTTGAAAGGAATGGAGACTATTACGAGAATTGATGCTTATCTTAT
3252002 TTAAAGGATGAACTTTGATTTTAA
386 TTAAAGGATGAACTTTGATTTTAA
3252026 GGAAAATAGG
Statistics
Matches: 1489, Mismatches: 227, Indels: 173
0.79 0.12 0.09
Matches are distributed among these distances:
438 2 0.00
439 150 0.10
440 178 0.12
441 15 0.01
442 2 0.00
443 3 0.00
444 2 0.00
445 1 0.00
446 4 0.00
447 3 0.00
449 2 0.00
451 7 0.00
455 5 0.00
456 2 0.00
459 1 0.00
460 8 0.01
461 3 0.00
462 5 0.00
463 3 0.00
464 2 0.00
465 1 0.00
466 2 0.00
467 1 0.00
468 2 0.00
470 2 0.00
472 5 0.00
473 332 0.22
474 210 0.14
475 157 0.11
476 32 0.02
477 145 0.10
478 188 0.13
479 6 0.00
480 4 0.00
481 1 0.00
482 3 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (448 bp):
GAGAATGTGTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGGCT
CATTTGATGCACGAACTTAGACTTTACAAGAATTGGGGGGAAAAAGCCTCTCTTGCGAAACCAAA
GCATCAATATCTTGTATCCTTATAAGGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATAG
GGATTTGTATGAGTATTCATGTTTGTCTTATTTAACAGACAAACTTTGATTCTATCAAAAATGGT
GGAAAAGAAATCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGGG
TTTTTGGTTCCTAATCTTGAAAGGAATGGAGACTATTACGAGAATTGATGCTTATCTTATTTAAA
GGATGAACTTTGATTTTAAAAGGAAAAAAAGTGCAAAAGAAAATCATTATCCATGTAA
Found at i:3251989 original size:474 final size:469
Alignment explanation
Indices: 3250666--3252855 Score: 2132
Period size: 474 Copynumber: 4.7 Consensus size: 469
3250656 TTTCCATGTA
* *
3250666 GAGAATGTGTTATAGTGCCTAATAACATAATGAATGAAGATCATTACTAGAATCCATGTTTGGCT
1 GAGAATGTGTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGGCT
* * *
3250731 CATTTGATGCACAAACTTAGACTTTACAAGAATTGGGGGGAAAAAGCCTCTCTTGCGAAACCAAA
66 TATTTGATGCAC-AACTTAGACTTTACAA-AATT-AGGGGAAAAAGCCTTTCTTGCGAAACCAAA
** *
3250796 GCATCAATATTTTGTATCCTTATAAGGAA-ACTATGTTTGTGGTGCCTAATCCTAAAAAGAATAG
128 GCATCAATATCATGTATCCTTATAA-GAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATAG
* *
3250860 GGATTTGTCTGAGTATTCATGTTTGTCTTATTTACA-AGACAAACTTTGATTCTATCAAAAATGG
192 GGATTTGTATGAGTATTCATGTTTGTCTTATTTA-AGAGACAAACTTTAATTCTATCAAAAATGG
* * * * *
3250924 TAGAAAAGAAATCTTTTCTTGCGACCCCAAACCATCAATGTCATGTATCCTAAATAAGAGAATGG
256 TGGAAAAGAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCT-AATAAGAGAATGG
** * * * *
3250989 GCTTTTGGTTCCTAATCTTGAATGGAATGGAGACTGTTACAAGAATCGATTCTTATCTTATTTAA
320 G-TTTTGGTTCCTAATCTTGAAAAGAATGGAGACTATTACGAGAATTGATGCTTATCTTATTTAA
* * * ** * *
3251054 AGGACAAACTTTGATTTTAAGGAAAATAGGGCAAAAAAAAGATTTTCATATAGAAGAAAATCATT
384 AGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATC
* * *
3251119 AATATCATTTGTCTTAATAAG
449 AATATCATTTATCCTAATGAG
* * * * *
3251140 GAGAATGTTTTTATAGTACCTAATCACAAAATGAATGAAAATCATTACTAGAATCCATTTTTGTC
1 GAGAATG-TGTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGGC
* * * * * * * *
3251205 TTATTTAATACAGGAACATT-GACTTTATAAAATTTGGTGAGAAAAACCCTTTCTTACGAAACAA
65 TTATTTGATGCA-CAAC-TTAGACTTTACAAAATTAGG-G-GAAAAAGCCTTTCTTGCGAAACCA
* * * * *
3251269 AAGCATCAATATCTTTTATCCTAATGAA-AAGACTATCTTTATTGG-GCCTAATCCTAAAAATAA
126 AAGCATCAATATCATGTATCCTTAT-AAGAAGACTATGTTTA-TGGTGCCTAATCCTAAAAAGAA
* * ** *
3251332 TAGGGATTATCAGTATGAGTATTCATGTTAGTCTTATTTAGGAGATGAACTTTCAA-TCTACCAA
189 TAGGGATT-T--GTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTT-AATTCTATCAA
* * * ** *
3251396 AAACGGGGGAAAAAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATATATCCTAATGAAG-
250 AAATGGTGGAAAAGAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAAT-AAGA
* * * * * * *
3251460 GAAATGTGGTTTTGGTTCCTAATCTTAAAAAGATTGGAAACTGTTATGAGAATTGATGGTTGTCT
314 G-AATG-GGTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTATTACGAGAATTGATGCTTATCT
** * * *
3251525 TATTTATGGGATGAACTTTGATTTTAAGGAAAATTGGGGAAAGAAAAGATTTCCATGCAAAAGAA
377 TATTTAAAGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAA
*
3251590 AATCATCAATATCATTTATCCTAATGAC
442 AATCATCAATATCATTTATCCTAATGAG
* * *
3251618 GAGAATGTGTTATAATGCCTAATCACATAATGAATGAAGACCATTACTAGAATCCATGTTTGGCT
1 GAGAATGTGTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGGCT
* * *
3251683 CATTTGATGCACGACTTAGACTTTACAAGAATTAAGGGGAAGAAAGCCTCTCTTGCGAAACCAAA
66 TATTTGATGCACAACTTAGACTTTACAA-AATT-AGGGGAA-AAAGCCTTTCTTGCGAAACCAAA
* *
3251748 GCATCAATATCGTGTATCCTTATAAGGAA-ACTATGTTTATGGTGCCTAATCCTGAAAAGAATAG
128 GCATCAATATCATGTATCCTTATAA-GAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATAG
** * * *
3251812 GGATTTGTATGAACATTCTTGTTTGTCTTATTTAAGAGACAAAATTTAATTCTATCCAAAATGGT
192 GGATTTGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTAATTCTATCAAAAATGGT
* *
3251877 GGAAAAGAAATCTTTTTTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGGG
257 GGAAAAGAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAAT-AAGAGAATGGG
* * *
3251942 TTTTTGGTTCCTAATCTTGAAAGGAATGGAGTCTATTGCGAGAATTGATGCTTATCTTATTTAAA
321 -TTTTGGTTCCTAATCTTGAAAAGAATGGAGACTATTACGAGAATTGATGCTTATCTTATTTAAA
* * * * *
3252007 GGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCAAAGCAAAAGGAAATCTTCA
385 GGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCA
*
3252072 ATATCATTTATCCTTATGAG
450 ATATCATTTATCCTAATGAG
* * * * *
3252092 GAGAATGTGCTTATAGTGCTTAATCAC-AAATTAA--ATGA--ATTACAAGAATCCATGTTTGCC
1 GAGAATGTG-TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGGC
* * * * * * * * * * *
3252152 TTACTTGAGGTACAAATTTA-AATATTTCAAATGTTTATGGGAAAAAG-ATTTCTGGTGAAACCA
65 TTATTTGATGCAC-AACTTAGACT-TTACAAA--ATTAGGGGAAAAAGCCTTTCTTGCGAAACCA
** *
3252215 AAGCATCAGCATCATGTATCC-TATTAAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAT
126 AAGCATCAATATCATGTATCCTTA-TAAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAAT
* * * * * * *
3252279 AGGGATTTGTGTGACTATTCATGTTTATTTTATTTAAGAGATAAACTTTGATTC-AGT-AAAAAA
190 AGGGATTTGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTAATTCTA-TCAAAAAT
* ** * *
3252342 CGTAAGG-AAA-AAAGCTTTTCTTATAACAACAAAGCATCAATGTCATGTA---T-A-AAGGGAA
254 GGT--GGAAAAGAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATAAGAGAA
* * * * * * * ** * *
3252400 TGTGCTTTGGTTCCCAATCTTGAAAAGATTGAAGGCTATTACGAGTATCAAGGCCTAT-TGTATT
317 TGGGTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTATTACGAGAATTGATGCTTATCT-TATT
** * * * * * *
3252464 TATGGGATAAACTTTGATTATATGGAAAATAGGTCAAAGAAAATATTTTCGTGCAAAAGAAAATC
381 TAAAGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATC
* *
3252529 ATCAGTATCATCTATCCTAATGAG
446 ATCAATATCATTTATCCTAATGAG
* * * * *
3252553 GAGAATTTATT-TAGAGCACCTAATCACAAAATTAATGAAGATCATTACTAGAATCCATGTTTGT
1 GAGAATGTGTTATAGTG--CCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGG
* * * * * *
3252617 CTTATATGAGGCATAAACTTAGACTATACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAATCC
64 CTTATTTGATGCA-CAACTTAGACTTTAC-AAAATTAG-GGG-AAAAAGCCTTTCTTGCGAAACC
* * * * * *
3252682 AAAGCATCAATA-CATGTATCCTAATGAGAAGATTATGTTTACGATGCCTAATCCTTTAAAA-AA
125 AAAGCATCAATATCATGTATCCTTATAAGAAGACTATGTTTATGGTGCCTAATCC-TAAAAAGAA
* * * *
3252745 TGGGGATTTGTATGAGTATTCTTGTTTGTCTTATTTAACAGA-ACAACTTT-A--C-A--AAAAT
189 TAGGGATTTGTATGAGTATTCATGTTTGTCTTATTTAAGAGACA-AACTTTAATTCTATCAAAAA
** * * * *
3252803 TGG-GGGGAAGAAAGCTTTTCTTGCAAAACCAAAGCCTCAATATCGTGTATCCT
253 TGGTGGAAAAGAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCT
3252856 TATGAGAAGA
Statistics
Matches: 1410, Mismatches: 248, Indels: 126
0.79 0.14 0.07
Matches are distributed among these distances:
459 6 0.00
460 5 0.00
461 166 0.12
462 21 0.01
464 7 0.00
465 3 0.00
466 41 0.03
467 89 0.06
468 73 0.05
469 115 0.08
470 38 0.03
471 15 0.01
472 5 0.00
473 6 0.00
474 256 0.18
475 164 0.12
476 28 0.02
477 139 0.10
478 230 0.16
479 3 0.00
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.32
Consensus pattern (469 bp):
GAGAATGTGTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGGCT
TATTTGATGCACAACTTAGACTTTACAAAATTAGGGGAAAAAGCCTTTCTTGCGAAACCAAAGCA
TCAATATCATGTATCCTTATAAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATAGGGAT
TTGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTAATTCTATCAAAAATGGTGGAA
AAGAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATAAGAGAATGGGTTTTG
GTTCCTAATCTTGAAAAGAATGGAGACTATTACGAGAATTGATGCTTATCTTATTTAAAGGATAA
ACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCA
TTTATCCTAATGAG
Found at i:3252836 original size:151 final size:152
Alignment explanation
Indices: 3252643--3252934 Score: 392
Period size: 152 Copynumber: 1.9 Consensus size: 152
3252633 ACTTAGACTA
* * *
3252643 TACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAATCCAAAGCATCAATA-CATGTATCCTAAT
1 TACAAAAATTGGGGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAAT
* * * * * * *
3252707 GAGAAGATTATGTTTACGATGCCTAATCCTTTAAAA-AATGGGGATTTGTATGAGTATTCT-TGT
66 GAGAAGACTATGTTGACGATACCTAATCC-TGAAAAGAATAGGGATTAGTATGACTATT-TATGT
3252770 TTGTCTTATTTAACAGAACAACTT
129 TTGTCTTATTTAACAGAACAACTT
* * * * *
3252794 TACAAAAATTGGGGGGAAGAAAGCTTTTCTTGCAAAACCAAAGCCTCAATATCGTGTATCCTTAT
1 TACAAAAATTGGGGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAAT
* *
3252859 GAGAAGACTATGTTGATGGTACCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTTATGTTT
66 GAGAAGACTATGTTGACGATACCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTTATGTTT
3252924 GTCTTATTTAA
131 GTCTTATTTAA
3252935 GGGACAAACA
Statistics
Matches: 121, Mismatches: 17, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
151 51 0.42
152 70 0.58
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.33
Consensus pattern (152 bp):
TACAAAAATTGGGGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAAT
GAGAAGACTATGTTGACGATACCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTTATGTTT
GTCTTATTTAACAGAACAACTT
Done.