Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold407
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4418299
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 127125 characters in sequence are not A, C, G, or T
File 22 of 28
Found at i:3253374 original size:158 final size:155
Alignment explanation
Indices: 3252586--3253375 Score: 411
Period size: 159 Copynumber: 5.0 Consensus size: 155
3252576 TCACAAAATT
* ** *
3252586 AATGAAGATCATTACTAGAATCCATGTTTGTCTTATATGAGGCATAAACTTAGACTATACAAAAA
1 AATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGG-ACGAACTTA-ACTTTACAAAAA
* * * *
3252651 TTGGTGGGAAAAAAGCCTTTCTTGCGAATCCAAAGCATCAATA-CATGTATCCTAATGAGAAGAT
64 TTGGTGGGAAAAAAGCATTTCTTGC-AAACTAAAGCATCAATATCATGTATCCTAATGAGAAGAC
* * *
3252715 TATGTTTACGATGCCTAATCCTTTAAAA-
128 TATGTTTATGGTGCCTAATCC-TAAAAAG
** * * * *
3252743 AATGGGGAT-TTGTA-TGAGTATTCTTGTTTGTCTTATTT-A--ACAGAAC--AACTTTACAAAA
1 AATGAAGATCAT-TACT-AGAATCCATGTTTGTCTTATTTGAGGAC-GAACTTAACTTTACAAAA
* * * * * * *
3252801 ATTGGGGGGAAGAAAGCTTTTCTTGCAAAACCAAAGCCTCAATATCGTGTATCCTTATGAGAAGA
63 ATTGGTGGGAAAAAAGCATTTCTTGC-AAACTAAAGCATCAATATCATGTATCCTAATGAGAAGA
* * *
3252866 CTATGTTGATGGTACCTAATCCTGAAAAG
127 CTATGTTTATGGTGCCTAATCCTAAAAAG
** * ** * *
3252895 AAT--AG-GGATTAGTATGACTATTTATGTTTGTCTTATTTAAGGGACAAACATTAA-TTCTATC
1 AATGAAGATCATTACTA-GA--ATCCATGTTTGTCTTATTTGA-GGACGAAC-TTAACTT-TA-C
* * * * * * * *
3252956 AAAAA-CGGTGGAAAGAAAAGCATATCTTGCAGCATTAAAGAATCAATGTCATGCATCCTAATGA
59 AAAAATTGGTGGGAA-AAAAGCATTTCTTGCA-AACTAAAGCATCAATATCATGTATCCTAATGA
* * ** * * * * *
3253020 -ATGGAATGCGTTTTTGGT-TCTCATTCTTGAAAAG
122 GA-AGACTATGTTTATGGTGCCT-AATCCTAAAAAG
* * * * * * * * * * *
3253054 ATTGGAGA-CTGTTACGAGAATCAATGCTTGTCTTATTTATAGGATGAACTTTTATTTTAGGAAA
1 AATGAAGATC-ATTACTAGAATCCATGTTTGTCTTATTT-GAGGACGAAC-TTAACTTTA-CAAA
** * * * ** * *
3253118 AATAT-G-GCAAAGAAAAG-ATTTCTATGCAAAATAAAATCATTAGCATCATTTATCCTAGTG-G
62 AAT-TGGTGGGAA-AAAAGCATTTCT-TGCAAACT-AAAGCATCAATATCATGTATCCTAATGAG
* * *
3253179 AGAGA-AAGTGTTTATAGTGCCTAATCAC-AAAATG
123 A-AGACTA-TGTTTATGGTGCCTAATC-CTAAAAAG
*
3253213 AATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGTACGAACTTAGACTTTACAAAAA
1 AATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGG-ACGAACTTA-ACTTTACAAAAA
* * *
3253278 TTGGTGGGAAAAAAGCCTTTCTTGCGAAACTAAAGCATCAGTATCTTGTATCCTAATGAGAAGAC
64 TTGGTGGGAAAAAAGCATTTCTTGC-AAACTAAAGCATCAATATCATGTATCCTAATGAGAAGAC
*
3253343 TATGTTTATGGTGCCAAATCCTAAAAAG
128 TATGTTTATGGTGCCTAATCCTAAAAAG
3253371 AATGA
1 AATGA
3253376 GGATTTGCAT
Statistics
Matches: 464, Mismatches: 122, Indels: 93
0.68 0.18 0.14
Matches are distributed among these distances:
149 3 0.01
150 4 0.01
151 53 0.11
152 56 0.12
153 2 0.00
154 3 0.01
155 3 0.01
156 5 0.01
157 31 0.07
158 91 0.20
159 198 0.43
160 7 0.02
161 4 0.01
162 4 0.01
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (155 bp):
AATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGACGAACTTAACTTTACAAAAATT
GGTGGGAAAAAAGCATTTCTTGCAAACTAAAGCATCAATATCATGTATCCTAATGAGAAGACTAT
GTTTATGGTGCCTAATCCTAAAAAG
Found at i:3253822 original size:475 final size:473
Alignment explanation
Indices: 3252790--3256636 Score: 4049
Period size: 475 Copynumber: 8.1 Consensus size: 473
3252780 TAACAGAACA
* * * * * *
3252790 ACTTTACAAAAATTGGGGGGAAGAAAGCTTTTCTTGCAAAACCAAAGCCTCAATATCGTGTATCC
1 ACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCC
* * * * * *
3252855 TTATGAGAAGACTATGTTGATGGTACCTAATCCTGAAAAGAAT-AGGGATTAGTATGACTATTTA
66 TTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGA-GGATTTGTATGAGTATTCA
* * * *
3252919 TGTTTGTCTTATTTAAGGGACAAACATTAATTCTATCAAAAACGGTGGAAAGAAAAGCATATCTT
130 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGC-TTTCTT
* ** * * * * *
3252984 G-CAGCATTAAAGAATCAATGTCATGCATCCTAATGAATGGAATGCGTTTTTGGTTCTCATTCTT
194 GTGA-CACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTC-CAATCTT
* *
3253048 GAAAAGATTGGAGACTGTTACGAGAATCAATGCTTGTCTTATTTATA-GGATGAACTTTTATTTT
257 GAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGTCTTATTTA-AGGGATGAACTTTGATTTT
* * * * ** *
3253112 AGGA-AAAATATGGCAAAGAAAAGATTTCTATGCAAAATAAAATCATTAGCATCATTTATCCTAG
321 A--ACAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAA
*
3253176 TG-GAGAGAAAGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
384 TGAG-GAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
* *
3253240 TTGTCTCATTTGAGGTACGAACTTAG
448 TTGTCTTATTTGAGGCACGAACTTAG
* * *
3253266 ACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACTAAAGCATCAGTATCTTGTATCC
1 ACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCC
* * *
3253331 TAATGAGAAGACTATGTTTATGGTGCCAAATCCTAAAAAGAATGAGGATTTGCATGAGTATTCAT
66 TTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGAGGATTTGTATGAGTATTCAT
* * * * ***
3253396 ATTTATCTCATTTAAGAGGCAAACTTTGATTCTATCAAAAATTTTGGAAA-ACAAAGCATTTCTT
131 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGA-AAAGC-TTTCTT
* * * * * *
3253460 GTGACACCAAAGCATCGACGACATGTATCCTAAAGAAGGGAATGAGTTTTTGGTTACCATTCTTG
194 GTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTT-CCAATCTTG
* * * * *
3253525 GAATGAATGGAGACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGGTTTTAA
258 AAAAGAATGGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAA
* * *
3253590 CAAAATAGGGCAGAGAAAACATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAA-GAA
323 CAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATG-A
* * * * * * ** * *
3253654 AGAGAATGTGCTTATTGTGCATAATCACAAAATGAATAAAGATCTTTACTAGAAAACATGGTAGT
387 GGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGT
3253719 CTTATTTGAGGCACGAACTTAG
452 CTTATTTGAGGCACGAACTTAG
* * * * *
3253741 ACTTTACGAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAATCCAAAGCGTTAATATCATGTATTC
1 ACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCC
* *** * *
3253806 TTATGAGAATACTATGTTTACATTGCCTAATCTTTAAAAA-AATGGGGATTTGTATGAGTATTCA
66 TTATGAGAAGACTATGTTTATGGTGCCTAATC-CTAAAAAGAATGAGGATTTGTATGAGTATTCA
* * ** * * *
3253870 TGTTTTTCTTATTTAACAGACAAACTTTGATTCGGTCAAAAATGTTGGAAAGAAAAACTTTTCTT
130 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGC-TTTCTT
* * * *
3253935 GCGACACCAAAGCATCAATGTCATGTATCATAATGAAGGGAATGTGTTTTTCGTTCCAAATCTTT
194 GTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCC-AATCTTG
* * *
3254000 AAATGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTTATTTAGGGGATGAACTTTGATTTTA
258 AAAAGAATGGAGACTGTTACGAGAATCAATGCTTGTC-TTATTTAAGGGATGAACTTTGATTTTA
* * ** *
3254065 AGGAAAATATGGCAAAGAAAAGATTTCCATGCAATCGAAAATCATCAATATCGTTTATCCTAATG
322 A-CAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATG
* * * * *
3254130 AAGAGAATATG-TTATAGTGCCTAATCACATAATGAATGAAGATCACTACTAGAATCTATGTTTG
386 AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG
* *
3254194 GCTTATTTGATGCACGAACTTAG
451 TCTTATTTGAGGCACGAACTTAG
** * * * * *
3254217 ACTTTACATGAATTGG-GGGAAGAAAGCCTCTCTCGCGAAACCAAAGCATCAATATCGTATATCC
1 ACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCC
* *
3254281 TTATGAGGAA-ACTATGTTTATGGTGCCTAATCCCGAAAAA-AATGAGGATTTGTATGAGCATTC
66 TTATGA-GAAGACTATGTTTATGGTGCCTAAT-CCTAAAAAGAATGAGGATTTGTATGAGTATTC
* * *
3254344 ATGTTT-TCTTATTTACGAGACAAACTTTGATTCTATCAAAAACGGTGGAAA-AGAAATCTTTTT
129 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGA-AAAGCTTTCT
* * *
3254407 TGTGACACCAAAGCAT-GA--TCATGTATCCTAATGAAGAGAATGGGTTTTTGGTTCCCAATCTT
193 TGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTT-CCAATCTT
* * * ** * * ** **
3254469 GAAAGGAATGAAAACTGTTACGAGAATTGACGCTTGTTTTATTTAAATGATGAACTTCAATTTTA
257 GAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA
* * * * * * * *
3254534 AGGAAAATAGGGCAAAGAAATGATTTCCATGCAGAACAAAATCGTTAATATCGTTTATCCTAATA
322 A-CAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATG
* *
3254599 AGGTGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATTTTTG
386 AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG
*
3254664 TCTTAATTGAGGCACGAAC-TAGG
451 TCTTATTTGAGGCACGAACTTA-G
* *
3254687 ACTTTACAAAAATTGGTGGG-AAAAAGCCTTTCTTGCGAAACCAAAGCATTAATATCATTTATCC
1 ACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCC
* * * * * * * * ***
3254751 TAATGTGAAAACTATGTTTATGGGGCTTGATCCTGAAAAGAGTG-GGAATTACAATGAGTATTCA
66 TTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGAGG-ATTTGTATGAGTATTCA
* * * * * * *
3254815 TGTTTGTCTTATTTAGGAGAAAAACTTTTATT-TTTCCAAAAATGGGGGAAAGAAAAACTTT-TT
130 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT-CAAAAACGGTGGAAAGAAAAGCTTTCTT
* *
3254878 TTACGACACCAAAGCATCAATGTCATGTATTCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCT
194 GT--GACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTT-CCAATCT
* * * * ** * *
3254943 TGAAAAGATTGGATATTGTTATGAGAATTGATGCTTGTCTTATTTATGGGATGAACTTTGGTTTT
256 TGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT
* *
3255008 AACAAAATAGGGCAAA-AAAAGATTTCCATGCAAAAGAAAATCATTAATATCATTTATCCTAACG
321 AACAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATG
* * * *
3255072 AGGACAATGTGTTTATAGTGCCAAATCACAAAATGAATGAAGGTCATTACTAGAATCCATGCTTG
386 AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG
* * * * *
3255137 GCTCATTTCAGGGATGAACTTAG
451 TCTTATTTGAGGCACGAACTTAG
* * * *** * *
3255160 ACTTTACAAAAATTGGGGGGAAGAAAGTCGC-TT-TTGCGAAATCAAAGGGCCAATATCGTGCAT
1 ACTTTACAAAAATTGGTGGGAAAAAAG-C-CTTTCTTGCGAAACCAAAGCATCAATATCATGTAT
* * * * * *
3255223 CCTTATGAGGAGACTATGTTTATGGTGCCTAATCTTGAAACGAAT-AGGGATTTGTATAACTATT
64 CCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGA-GGATTTGTATGAGTATT
** * * * * * * *
3255287 CATGCCTATGTTATTTTAGAGATAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAATCTCTTT
128 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCT-TTC
** ** *
3255352 TTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGATAATGGGTTTTTGGTTCCTAATCT
192 TTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCC-AATCT
* * * *
3255417 TGAAAAGATTGGAGACTGTTTCGAGAATCAATGCTTTTCTTATTTATAGGG-TGAGCTTTGATTT
256 TGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGTCTTATTTA-AGGGATGAACTTTGATTT
* * * * *
3255481 TAATCAAAATA-GTCAAAGAAAAGATTTCCATGCAGAAGAAAATCATCAGTATAATTGATCCTAA
320 TAA-CAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAA
* * * * * * ***
3255545 TGACGAGAATATGTTTATAATGCCTAATCGCAAAATGAATAAAGATCATTACTGGAATTTGTGTT
384 TGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTT
* * *
3255610 TGTCTTATTTGAGGCACAAATTTAA
449 TGTCTTATTTGAGGCACGAACTTAG
* ** * * *
3255635 ACTTT-CTTAAAATTTATGGG-AAAAAGCCTTTTTTGTGAAATCAAAGCATCAATATCATGTATC
1 ACTTTAC-AAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATC
* * * * *
3255698 C-TATTAAGAAGACTATGATTATGGTGCCTAATCTTAAAAAGAGT-AGGGATTTGTATGACTATT
65 CTTA-TGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGA-GGATTTGTATGAGTATT
*
3255761 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGTTGGACAA-AAAAGCTTTG
128 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGA-AAGAAAAGCTTT-
*
3255825 CTTGTGACACCAAAGCATCAATGTCATGTATCGTAATGAAGGGAATGTGTTTTT-GTTCCCAATC
191 CTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTT-CCAATC
* * * * ***
3255889 TTGAAAAGATTGGAGACTATTATGAGAATCAATGCTTGTCTTATTTATGGGGCAAACTTTGATTT
255 TTGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTT
** * ** *
3255954 TATGGAAAATAGGGCAAA-AAAAGTTTTCTGTGCAAAA-AAAATCATCAGTATCATTTATCCTAA
320 TA-ACAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAA
*
3256017 TGAGGAGAATGTGTTTGTAGTGCCTAATCACAAAAT-AATTGAAGATCATTACTAGAATCCATGT
384 TGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA-TGAAGATCATTACTAGAATCCATGT
* *
3256081 TTGTCTT-TTTAGAGGTACGAACATAG
448 TTGTCTTATTT-GAGGCACGAACTTAG
** * * * *
3256107 ACTTTGTAAAAATTGGTGGGAAAAAAGCTTTTCTTGCGAAACTAAAGCATAAATATTACT-TATC
1 ACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCA-TGTATC
** * * * * * * *
3256171 CAAATAAGAAGACTATGTTT-TCGGGGCCTAATCCTAAAAAGATTGAGAATTAGTATAAGTATTA
65 CTTATGAGAAGACTATGTTTAT-GGTGCCTAATCCTAAAAAGAATGAGGATTTGTATGAGTATTC
* * * * * * *
3256235 ATGTTTGTCTTACTTAAGAGACACACTTTGGTTCTACCAAAAATGATGGAAAAAAAAAGC-TTCT
129 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGG-AAAGAAAAGCTTTCT
* * * * * * * *
3256299 TTTGCAACACCAAGGCATTAATGACATGTGTCCTAAAGAAGGGAATGTGTTTTTCGTTCCTATTC
193 TGTG--ACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCC-AATC
* * *
3256364 TTGAAAAGAATGGAGACTGTTACGAGAAACAATGCTTGGCTTATTTAAGGGATGAACTTTGGTTT
255 TTGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTT
* *** * *
3256429 TAACAAAATAGGGCAAAGAAAAAATTTTTGTCCAAAAGAAATTCATCAATATCATTTATCC-AAC
320 TAACAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAA-
* * *
3256493 TGAGGAGAATGTGTTTATAATGCCAAATCAAAAAATGAATGAAGATCATTACTAGAATCCATGTT
384 TGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTT
* * *
3256558 TAG-CTCATTTGAGGGATGAACTTAG
449 T-GTCTTATTTGAGGCACGAACTTAG
* * * * *
3256583 GCTTGT-CAAAAATTTAG-GGGAAGAAAGCCTCTCTTACGAAACCAAAGCATCAAT
1 ACTT-TACAAAAA-TTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAAT
3256637 GCCATGTAAC
Statistics
Matches: 2813, Mismatches: 481, Indels: 154
0.82 0.14 0.04
Matches are distributed among these distances:
469 99 0.04
470 234 0.08
471 53 0.02
472 132 0.05
473 375 0.13
474 544 0.19
475 783 0.28
476 516 0.18
477 76 0.03
478 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (473 bp):
ACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCC
TTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGAGGATTTGTATGAGTATTCAT
GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTCTTGT
GACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCAATCTTGAAA
AGAATGGAGACTGTTACGAGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAACAA
AATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAG
AATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTTA
TTTGAGGCACGAACTTAG
Found at i:3256865 original size:317 final size:315
Alignment explanation
Indices: 3256362--3256968 Score: 752
Period size: 317 Copynumber: 1.9 Consensus size: 315
3256352 TCGTTCCTAT
*
3256362 TCTTGAAAAGAATGGAGACTGTTACGAGAAACAATGCTTGGCTTATTTAAGGGATGAACTTTGGT
1 TCTTGAAAAGAATGGAGACTGTTACGAGAAACAATGCTTGGCTTATTTAAGGGATGAACTTTGAT
* * * * *
3256427 TTTAACAAAATAGGGCAAAGAAAAAATTTTTGTCCAAAAGAAATTCATCAATATCATTTATCCAA
66 TTTAACAAAACAAGGCAAACAAAAAATTTATGT-CAAAAGAAAATCATCAATATCATTTATCCAA
* *
3256492 CTGAGGAGAATGTGTTTATAATGCCAAATCAAAAAATGAATGAAGATCATTACTAGAATCCATGT
130 CTAAGGAGAATGTGTTTATAATGCCAAATCAAAAAACGAATGAAGATCATTACTAGAATCCATGT
* * * *
3256557 TTAGCTCATTTGAGGGATGAACTTAGGCTTGT-CAAAAATTTAG-GGGAAGAAAGCCTCTCTTAC
195 TTAGCTCATTTGAGGCACGAACTTAGACTT-TACAAAAATTT-GTGGGAAAAAAGCCTCTCTTAC
* *
3256620 GAAACCAAAGCATCAATGCCATGTAACCTAATGAAGAGAATGGGTTTTTGGCTCTCAA
258 AAAACCAAAGCATCAATACCATGTAACCTAATGAAGAGAATGGGTTTTTGGCTCTCAA
* * ** * * * *
3256678 TCTTGAAAAGATTGGAGACTGTTATGAGAGTCGATGCTTGTCTTATTTATGGGGTGAACTTTGAT
1 TCTTGAAAAGAATGGAGACTGTTACGAGAAACAATGCTTGGCTTATTTAAGGGATGAACTTTGAT
* * * **
3256743 TTTAAGGAAAACAAGGCAAACAAAAGATTTCCATGT-AAAAGAAAATCATCTATATCATTTATTT
66 TTTAA-CAAAACAAGGCAAACAAAAAATTT--ATGTCAAAAGAAAATCATCAATATCATTTATCC
* * * * * * ***
3256807 TATTAAGGAGAATGTTTTTATACTGCCTAATCACAAAACGAATGAAGATCATTACTAGAATTTGT
128 AACTAAGGAGAATGTGTTTATAATGCCAAATCAAAAAACGAATGAAGATCATTACTAGAATCCAT
** * * *
3256872 GTTTTTCTCTTTTGAGGCACGAACTTAGACTTTACAAAAATTTGTGGGAAAAAAGCCTTTCTTGC
193 GTTTAGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTTGTGGGAAAAAAGCCTCTCTTAC
* *
3256937 AAAACCAAAGCATCAATATCATGTATCCTAAT
258 AAAACCAAAGCATCAATACCATGTAACCTAAT
3256969 AACAAGACTA
Statistics
Matches: 243, Mismatches: 43, Indels: 9
0.82 0.15 0.03
Matches are distributed among these distances:
316 63 0.26
317 177 0.73
319 3 0.01
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (315 bp):
TCTTGAAAAGAATGGAGACTGTTACGAGAAACAATGCTTGGCTTATTTAAGGGATGAACTTTGAT
TTTAACAAAACAAGGCAAACAAAAAATTTATGTCAAAAGAAAATCATCAATATCATTTATCCAAC
TAAGGAGAATGTGTTTATAATGCCAAATCAAAAAACGAATGAAGATCATTACTAGAATCCATGTT
TAGCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTTGTGGGAAAAAAGCCTCTCTTACAAA
ACCAAAGCATCAATACCATGTAACCTAATGAAGAGAATGGGTTTTTGGCTCTCAA
Found at i:3257665 original size:470 final size:471
Alignment explanation
Indices: 3256614--3258359 Score: 1953
Period size: 470 Copynumber: 3.7 Consensus size: 471
3256604 AGAAAGCCTC
* * * * * *
3256614 TCTTACGAAACCAAAGCATCAATGCCATGTAACCTAATGAAG--AGAATGGGTTTTTGGCTCTCA
1 TCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAAAGAA--GGTTTTTGGTTCCCA
* * * ** *
3256677 ATCTTGAAAAGATTGGAGACTGTTATGAGAGTCGATGCTTGTCTTATTTATGGGGTGAACTTTGA
64 ATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAAGGATGAACTTTGA
* * * * * *
3256742 TTTTAAGGAAAACAAGGCAAACAAAAGATTTCCATGTAAAAGAAAATCATCTATATCATTTAT-T
129 TTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCAAGCAAAAGAAAATCATCAATATCATTTATCC
* * * * * ***
3256806 TTATTAAGGAGAATGTTTTTATACTGCCTAATCACAAAACGAATGAAGATCATTACTAGAATTTG
194 TTA-TGAGGAGAATGTGTTTATAGTGCCTAATCACAAAA-AAATGAAGATTATTACTAGAATCCA
* * *
3256871 TGTTTTTCTCTTTTGAGGCACGAACTTAGACTTTACAAAAATTTGTGGGAAAAAAGCCTTTCTTG
257 TGTTTGTCTCATTTGAGGCAC--A--GAGACTTTACAAAAATTTGTGGGAAAAAAGCCTTTCTTG
* * *
3256936 CAAAACCAAAGCATCAATATCATGTATCCTAATAACAAGACTATGTTTGTGGTGCCTAAACCTAA
318 CAAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTAA
** * * * *
3257001 AAAG-ATTAGGATTTGTATGAGTATTCATGTTTGTCTCAATTATGAGACGAACTTTGGTTCTGTC
383 AAAGAATGGGGATTTGTATGAGTATTCATGTTTGTCTCATTTAAGAGACAAACTTTGATTCTGTC
*
3257065 AAAAACATTGGAAAGAAAAGCTTT
448 AAAAACATTGGAAAAAAAAGCTTT
* *
3257089 TCTTACGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAA-TAGGTTTTTGGTTCCCAA
1 TCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGA-AAGAAGGTTTTTGGTTCCCAA
* * * * * * *
3257153 TCTTGAAAGGAATAGAGACTGTTGCAAGAATTGGTGCTTGTCTTATTTAAAGGATGAGCTTTGAT
65 TCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAAGGATGAACTTTGAT
* *
3257218 TTTAAGGAAAATAAGGCAAAGAAAAGATTTCCAAGCAGAAGGAAATCATCAATATCATTTATCCT
130 TTTAAGGAAAATAAGGCAAAGAAAAGATTTCCAAGCAAAAGAAAATCATCAATATCATTTATCCT
* *
3257283 TATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAAGGATGAAGATTATTACTATAATCCATG
195 TATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAA-AATGAAGATTATTACTAGAATCCATG
* **
3257348 TTTATCTCATTTGAGGCAC-GA-ACTTTACAAAAATTTGTGGGAAAAAAGCCTTTCTTGTGAAAC
259 TTTGTCTCATTTGAGGCACAGAGACTTTACAAAAATTTGTGGGAAAAAAGCCTTTCTTGCAAAAC
*
3257411 CAAAGCATCAATATCATTTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAA
324 CAAAGCATCAATATCATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAA
* **
3257476 TGGGGATTTGTATGAGTATTCATGTTTGTCTCATTTAAGAGACAAACATTGATTAGGTCAAAAAC
389 TGGGGATTTGTATGAGTATTCATGTTTGTCTCATTTAAGAGACAAACTTTGATTCTGTCAAAAAC
* *
3257541 GTTGGAAATAAAAGCTTT
454 ATTGGAAAAAAAAGCTTT
* ** * *
3257559 TCTTGTGATGCCAAAGCATCAATGTCATGCATCTTAATGAAGAAAGAAGGTTTTTGGTTCCCAAT
1 TCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAAAGAAGGTTTTTGGTTCCCAAT
* * * * * *
3257624 CTTGAAAGGAATGGAGCCTGTTATGAGAATTGATTCTTGTCTTATTTAAAGGATGAACTTTGACT
66 CTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAAGGATGAACTTTGATT
* * * * * *
3257689 ATAAGGAAAATAGGGCAAAGAAAAGATTTCAAAGCAGAAGAAAATCATTAATATCATTTATCTTT
131 TTAAGGAAAATAAGGCAAAGAAAAGATTTCCAAGCAAAAGAAAATCATCAATATCATTTATCCTT
* * * * * * *
3257754 ATGAGAAGAATATGTTTATAGCGCCTAATCAC--AAAAA-GAACA-AATTACAAGAATCCATGTC
196 ATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAAAATGAAGATTATTACTAGAATCCATGTT
* * * * * * * *
3257815 TGCCTTATTTAAGGCACAAATTTAGACTTTTCAAACATTTATGGG-AAAAAGCCTTTC-TGGAGA
261 TGTCTCATTTGAGGCAC--A--GAGACTTTACAAAAATTTGTGGGAAAAAAGCCTTTCTTGCA-A
* * ** * * *
3257878 AACTAAAGCATCAGTATCATGTATCCTGTTAAGAAGACTATGTTTATAGTGCCTAATCTTGAAAA
321 AACCAAAGCATCAATATCATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTAAAAA
* * * * *
3257943 GAATGGGGATTTGTATGACTATTCATGTTTGTTTTATTTAAGAGACAAACTTTGATTCTATCAGA
386 GAATGGGGATTTGTATGAGTATTCATGTTTGTCTCATTTAAGAGACAAACTTTGATTCTGTCAAA
*
3258008 AACATTGAAAAAAAAAGCTTT
451 AACATTGGAAAAAAAAGCTTT
* ** *
3258029 TCTTGCGACACCAAAGCTTCAATGTCATGTATCCTAAT-AA-AGGGAATGTGTTTTGGTTCCCAA
1 TCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAAAGAAGGT-TTTTGGTTCCCAA
* * * * * * * *
3258092 TCTTGAAAAGATTGGAGACTATTACGAGAATCGAGGCTTGCCATATTTACAGGATAAACTTAGAT
65 TCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAAGGATGAACTTTGAT
* * * * ** *
3258157 TTTAA-GAAAAT-AGAGTAAAGAAAATATTTCCATGTAAAAGAAAATCATCAGCATCATTTATTC
130 TTTAAGGAAAATAAG-GCAAAGAAAAGATTTCCAAGCAAAAGAAAATCATCAATATCATTTATCC
* * *
3258220 TAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATAAATGAATATCT-TTACTAAAATCCA
194 TTATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAA-AAATGAAGAT-TATTACTAGAATCCA
* * ** * *
3258284 TGTTTGTCTCATATGAGACATAAACTTAGACTATACAAAAATTGGTGGGAAAAAAGCCTTTCTTG
257 TGTTTGTCTCATTTGAGGC----ACAGAGACTTTACAAAAATTTGTGGGAAAAAAGCCTTTCTTG
3258349 CAAAACCAAAG
318 CAAAACCAAAG
3258360 TGTAGACACC
Statistics
Matches: 1068, Mismatches: 175, Indels: 57
0.82 0.13 0.04
Matches are distributed among these distances:
465 28 0.03
466 4 0.00
467 2 0.00
468 83 0.08
469 173 0.16
470 453 0.42
471 20 0.02
472 4 0.00
473 42 0.04
474 20 0.02
475 232 0.22
476 3 0.00
477 3 0.00
478 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.32
Consensus pattern (471 bp):
TCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAAAGAAGGTTTTTGGTTCCCAAT
CTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAAGGATGAACTTTGATT
TTAAGGAAAATAAGGCAAAGAAAAGATTTCCAAGCAAAAGAAAATCATCAATATCATTTATCCTT
ATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAAAATGAAGATTATTACTAGAATCCATGTT
TGTCTCATTTGAGGCACAGAGACTTTACAAAAATTTGTGGGAAAAAAGCCTTTCTTGCAAAACCA
AAGCATCAATATCATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATG
GGGATTTGTATGAGTATTCATGTTTGTCTCATTTAAGAGACAAACTTTGATTCTGTCAAAAACAT
TGGAAAAAAAAGCTTT
Found at i:3258593 original size:21 final size:21
Alignment explanation
Indices: 3258553--3258593 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
3258543 TTTTGTCAAA
*
3258553 ATGTATCGATACATGCCCTTG
1 ATGTATCGATACAAGCCCTTG
*
3258574 ATGTATCGATACAAGGCCTT
1 ATGTATCGATACAAGCCCTT
3258594 AACGGTCAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.32
Consensus pattern (21 bp):
ATGTATCGATACAAGCCCTTG
Found at i:3258648 original size:20 final size:20
Alignment explanation
Indices: 3258623--3258679 Score: 96
Period size: 20 Copynumber: 2.9 Consensus size: 20
3258613 TTTTCACAAT
*
3258623 TTGTATCAATACATTGTTCG
1 TTGTATCGATACATTGTTCG
*
3258643 TTGTATTGATACATTGTTCG
1 TTGTATCGATACATTGTTCG
3258663 TTGTATCGATACATTGT
1 TTGTATCGATACATTGT
3258680 ATCGATACAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.23, C:0.12, G:0.18, T:0.47
Consensus pattern (20 bp):
TTGTATCGATACATTGTTCG
Found at i:3258681 original size:13 final size:13
Alignment explanation
Indices: 3258663--3258690 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
3258653 ACATTGTTCG
3258663 TTGTATCGATACA
1 TTGTATCGATACA
3258676 TTGTATCGATACA
1 TTGTATCGATACA
3258689 TT
1 TT
3258691 CTGGGTTTAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.14, G:0.14, T:0.43
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:3258731 original size:20 final size:20
Alignment explanation
Indices: 3258706--3258799 Score: 106
Period size: 20 Copynumber: 4.7 Consensus size: 20
3258696 TTTACCCAGA
3258706 TGTATCGATACATTTTGCAT
1 TGTATCGATACATTTTGCAT
3258726 TGTATCGATAC--TTTGCTCAT
1 TGTATCGATACATTTTG--CAT
3258746 TGTATCGATACA--TTGCTTAT
1 TGTATCGATACATTTTGC--AT
* *
3258766 TGTATCGATACATTTTACAA
1 TGTATCGATACATTTTGCAT
3258786 TGTATCGATACATT
1 TGTATCGATACATT
3258800 CGGGCATTTT
Statistics
Matches: 65, Mismatches: 2, Indels: 14
0.80 0.02 0.17
Matches are distributed among these distances:
18 5 0.08
20 57 0.88
22 3 0.05
ACGTcount: A:0.27, C:0.16, G:0.14, T:0.44
Consensus pattern (20 bp):
TGTATCGATACATTTTGCAT
Found at i:3258759 original size:40 final size:41
Alignment explanation
Indices: 3258705--3258799 Score: 119
Period size: 40 Copynumber: 2.4 Consensus size: 41
3258695 GTTTACCCAG
3258705 ATGTATCGATACATTTTGC-ATTGTATCGATAC-TTTGCT-CA
1 ATGTATCGATACATTTTGCTATTGTATCGATACATTT--TACA
*
3258745 TTGTATCGATACA--TTGCTTATTGTATCGATACATTTTACA
1 ATGTATCGATACATTTTGC-TATTGTATCGATACATTTTACA
3258785 ATGTATCGATACATT
1 ATGTATCGATACATT
3258800 CGGGCATTTT
Statistics
Matches: 47, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
38 4 0.09
39 1 0.02
40 39 0.83
41 3 0.06
ACGTcount: A:0.27, C:0.16, G:0.14, T:0.43
Consensus pattern (41 bp):
ATGTATCGATACATTTTGCTATTGTATCGATACATTTTACA
Found at i:3259610 original size:61 final size:61
Alignment explanation
Indices: 3259436--3259707 Score: 318
Period size: 61 Copynumber: 4.4 Consensus size: 61
3259426 TAGCCCTTCC
* *
3259436 AGTCCTCAAAGAGCAGGACGTCTTTTTTCTTTTTAAAGCCCACACAAA-TTGGTGGCACCTTT
1 AGTCCTCAAAGAGCAGGACG-CTCTTTTCCTTTTAAAGCCCACA-AAAGTTGGTGGCACCTTT
* * * * *
3259498 AGTCCTTAAAGAGCAGGACGCATTTTTTCTTTTTAAAGCCCACACAGGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGC-TCTTTTCCTTTTAAAGCCCACAAAAGTTGGTGGCA-CCTTT
*
3259561 AGTCCTCAAAGAGCAAGACGC-CTTTTCCTTTTAAAGCCCACAAAAGTTGGTGGCACCTTTT
1 AGTCCTCAAAGAGCAGGACGCTCTTTTCCTTTTAAAGCCCACAAAAGTTGGTGGCACC-TTT
* * * * *
3259622 AGTCCTCAAAGAGTAGGACGC-CTTCTCC-TTCAAAGCCCACACAAGTTGGTGGCACCTCCT
1 AGTCCTCAAAGAGCAGGACGCTCTTTTCCTTTTAAAGCCCACAAAAGTTGGTGGCACCT-TT
* * *
3259682 AGTTCTCAAAGAGCAGGGCGCACTTT
1 AGTCCTCAAAGAGCAGGACGCTCTTT
3259708 ATTTTCCTCC
Statistics
Matches: 185, Mismatches: 19, Indels: 13
0.85 0.09 0.06
Matches are distributed among these distances:
59 1 0.01
60 47 0.25
61 63 0.34
62 50 0.27
63 24 0.13
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (61 bp):
AGTCCTCAAAGAGCAGGACGCTCTTTTCCTTTTAAAGCCCACAAAAGTTGGTGGCACCTTT
Found at i:3259734 original size:43 final size:44
Alignment explanation
Indices: 3259679--3259794 Score: 121
Period size: 43 Copynumber: 2.7 Consensus size: 44
3259669 GGTGGCACCT
* * *
3259679 CCTAGTTCTCAAAGAGCAGGGCGCACTTTATTTTCC-TC-CTCCC
1 CCTAGTCCTCAAAGAGCAGGACGCACTTCA-TTTCCTTCTCTCCC
* * * *
3259722 CCTTGTCCTCAAATAGTAGGACGCACTTCATTTCCTTCTTTTCCC
1 CCTAGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTC-TCTCCC
*
3259767 TCTAGTCCTCAAAGAGCAGGACGC-CTTC
1 CCTAGTCCTCAAAGAGCAGGACGCACTTC
3259795 TCCTTCAAGG
Statistics
Matches: 59, Mismatches: 11, Indels: 5
0.79 0.15 0.07
Matches are distributed among these distances:
42 5 0.08
43 26 0.44
44 4 0.07
45 24 0.41
ACGTcount: A:0.20, C:0.34, G:0.16, T:0.31
Consensus pattern (44 bp):
CCTAGTCCTCAAAGAGCAGGACGCACTTCATTTCCTTCTCTCCC
Found at i:3259893 original size:148 final size:148
Alignment explanation
Indices: 3259621--3259913 Score: 505
Period size: 148 Copynumber: 2.0 Consensus size: 148
3259611 TGGCACCTTT
* *
3259621 TAGTCCTCAAAGAGTAGGACGCCTTCTCCTTCAAAGCCCACACAAGTTGGTGGCACCTCCTAGTT
1 TAGTCCTCAAAGAGCAGGACGCCTTCTCCTTCAAAGCCCACACAAGTTGGTGGCACCTCCTAGTC
* * * *
3259686 CTCAAAGAGCAGGGCGCACTTTATTTTCCTCCTCCCCCTTGTCCTCAAATAGTAGGACGCACTTC
66 CTCAAAGAGCAGGACGCACTTTATTTTCCTCCTCCCCCTTGTCCTCAAAGAGCAAGACGCACTTC
3259751 ATTTCCTTCTTTTCCCTC
131 ATTTCCTTCTTTTCCCTC
*
3259769 TAGTCCTCAAAGAGCAGGACGCCTTCTCCTTCAAGGCCCACACAAGTTGGTGGCACCTCCTAGTC
1 TAGTCCTCAAAGAGCAGGACGCCTTCTCCTTCAAAGCCCACACAAGTTGGTGGCACCTCCTAGTC
* *
3259834 CTCAAAGAGTAGGACGCACTTTATTTTCCTCTTCCCCCTTGTCCTCAAAGAGCAAGACGCACTTC
66 CTCAAAGAGCAGGACGCACTTTATTTTCCTCCTCCCCCTTGTCCTCAAAGAGCAAGACGCACTTC
3259899 ATTTCCTTCTTTTCC
131 ATTTCCTTCTTTTCC
3259914 ATTTCAAAGC
Statistics
Matches: 136, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
148 136 1.00
ACGTcount: A:0.22, C:0.33, G:0.16, T:0.29
Consensus pattern (148 bp):
TAGTCCTCAAAGAGCAGGACGCCTTCTCCTTCAAAGCCCACACAAGTTGGTGGCACCTCCTAGTC
CTCAAAGAGCAGGACGCACTTTATTTTCCTCCTCCCCCTTGTCCTCAAAGAGCAAGACGCACTTC
ATTTCCTTCTTTTCCCTC
Found at i:3260014 original size:61 final size:60
Alignment explanation
Indices: 3259918--3260091 Score: 235
Period size: 62 Copynumber: 2.8 Consensus size: 60
3259908 TTTTCCATTT
* *
3259918 CAAAGCCCACACAAGTTGGTGGCA-TTTTCCGGTCCTCAAAGAGCAGGACGC-TTTCTCTTTG
1 CAAAGCCCACACAAGTTGGTGGCACCTTT--AGTCCTCAAAGAGCAGGACGCTTTTCT-TTTG
* *
3259979 CAAAGCCCACGCAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTT
1 CAAAGCCCACACAAGTTGGTGGCA-CCTTTAGTCCTCAAAGAGCAGGACG-CTTTTCTTTTG
*
3260041 CAAAGCCCACACAAGTTGGTGGCACCTCCTAGTCCTCAAAGAGCAGGACGC
1 CAAAGCCCACACAAGTTGGTGGCACCT-TTAGTCCTCAAAGAGCAGGACGC
3260092 ACTTTATTTT
Statistics
Matches: 102, Mismatches: 6, Indels: 10
0.86 0.05 0.08
Matches are distributed among these distances:
61 46 0.45
62 48 0.47
63 8 0.08
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.23
Consensus pattern (60 bp):
CAAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACGCTTTTCTTTTG
Found at i:3260066 original size:62 final size:62
Alignment explanation
Indices: 3259907--3260096 Score: 246
Period size: 61 Copynumber: 3.1 Consensus size: 62
3259897 TCATTTCCTT
* * *
3259907 CTTTTC-CATTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCCGGTCCTCAAAGAGCAGGACG-
1 CTTTTCTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTT--AGTCCTCAAAGAGCAGGACGC
* *
3259968 C-TTTCTCTTTGCAAAGCCCACGCAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGC
1 CTTTTCTCTTTTCAAAGCCCACACAAGTTGGTGGCA-CCTTTAGTCCTCAAAGAGCAGGACGC
*
3260030 CTTTTCT-TTTTCAAAGCCCACACAAGTTGGTGGCACCTCCTAGTCCTCAAAGAGCAGGACGC
1 CTTTTCTCTTTTCAAAGCCCACACAAGTTGGTGGCACCT-TTAGTCCTCAAAGAGCAGGACGC
3260092 ACTTT
1 -CTTT
3260097 ATTTTCCTTT
Statistics
Matches: 114, Mismatches: 8, Indels: 12
0.85 0.06 0.09
Matches are distributed among these distances:
60 4 0.04
61 49 0.43
62 49 0.43
63 12 0.11
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (62 bp):
CTTTTCTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACGC
Found at i:3260138 original size:43 final size:43
Alignment explanation
Indices: 3260072--3260347 Score: 260
Period size: 43 Copynumber: 6.3 Consensus size: 43
3260062 GCACCTCCTA
* *
3260072 GTCCTCAAAGAGCAGGACGCACTTTATTTTCCTTTTCTACTTT
1 GTCCTCAAAGAGCAGGACACACTTTATTTTCCTTTTCTCCTTT
*
3260115 GTCCTCAAAGAGCAAGACACACTTTATTTTCCTTTTCTCCTTT
1 GTCCTCAAAGAGCAGGACACACTTTATTTTCCTTTTCTCCTTT
* * * *
3260158 GTCCTCAAATAGCAAGACAC-GTTCCATTCCCTT-CTTTTCTCCTTTT
1 GTCCTCAAAGAGCAGGACACACTT-TATT---TTCCTTTTCTCC-TTT
* * *
3260204 GTCCTCAAAGAGCAGGACACACTTCATTCCCTT-CTTTTGTCTTTT
1 GTCCTCAAAGAGCAGGACACACTTTATT---TTCCTTTTCTCCTTT
* *
3260249 GTCCTCAAAGTGCAGGACGCACTTTATTTTCCTCTTTCT--TTT
1 GTCCTCAAAGAGCAGGACACACTTTATTTTCCT-TTTCTCCTTT
* * *
3260291 GTCCTCAAAGAGCAGGACGCA-TTTCGTTTTCCTTTTTTCCTTT
1 GTCCTCAAAGAGCAGGACACACTTT-ATTTTCCTTTTCTCCTTT
*
3260334 ATCCTCGAAA-AGCA
1 GTCCTC-AAAGAGCA
3260348 AGACGTACAC
Statistics
Matches: 202, Mismatches: 19, Indels: 24
0.82 0.08 0.10
Matches are distributed among these distances:
41 7 0.03
42 34 0.17
43 76 0.38
44 7 0.03
45 37 0.18
46 39 0.19
47 2 0.01
ACGTcount: A:0.21, C:0.28, G:0.13, T:0.39
Consensus pattern (43 bp):
GTCCTCAAAGAGCAGGACACACTTTATTTTCCTTTTCTCCTTT
Found at i:3262731 original size:184 final size:184
Alignment explanation
Indices: 3262422--3262797 Score: 745
Period size: 184 Copynumber: 2.0 Consensus size: 184
3262412 TTCAGATCTG
3262422 GATTCATGGTGGGATAATCTCCAAAATGATGTTTTTCAACAAAAAGTCTCCTTTGTCCAATAGAT
1 GATTCATGGTGGGATAATCTCCAAAATGATGTTTTTCAACAAAAAGTCTCCTTTGTCCAATAGAT
3262487 GTAGGTTAGCCTTGGCCTAGAGTCCAAAATTCTTGTTGGTGACATGGTCAACGGGTTGTTCCGTC
66 GTAGGTTAGCCTTGGCCTAGAGTCCAAAATTCTTGTTGGTGACATGGTCAACGGGTTGTTCCGTC
3262552 ATCCTAAACTACTATGGGATCATGGAATGAACACGTGATGCCCATCCCCTTTTT
131 ATCCTAAACTACTATGGGATCATGGAATGAACACGTGATGCCCATCCCCTTTTT
3262606 GATTCATGGTGGGATAATCTCCAAAATGATGTTTTTCAACAAAAAGTCTCCTTTGTCCAATAGAT
1 GATTCATGGTGGGATAATCTCCAAAATGATGTTTTTCAACAAAAAGTCTCCTTTGTCCAATAGAT
3262671 GTAGGTTAGCCTTGGCCTAGAGTCCAAAATTCTTGTTGGTGACATGGTCAACGGGTTGTTCCGTC
66 GTAGGTTAGCCTTGGCCTAGAGTCCAAAATTCTTGTTGGTGACATGGTCAACGGGTTGTTCCGTC
3262736 ATCCTAAACTACTATGGGATCATGGAATGAACACGTGATGCCCATCCCCTTTTT
131 ATCCTAAACTACTATGGGATCATGGAATGAACACGTGATGCCCATCCCCTTTTT
3262790 GATT-ATGG
1 GATTCATGG
3262798 ACGTTGGAAT
Statistics
Matches: 192, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
183 4 0.02
184 188 0.98
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (184 bp):
GATTCATGGTGGGATAATCTCCAAAATGATGTTTTTCAACAAAAAGTCTCCTTTGTCCAATAGAT
GTAGGTTAGCCTTGGCCTAGAGTCCAAAATTCTTGTTGGTGACATGGTCAACGGGTTGTTCCGTC
ATCCTAAACTACTATGGGATCATGGAATGAACACGTGATGCCCATCCCCTTTTT
Found at i:3263668 original size:79 final size:79
Alignment explanation
Indices: 3263568--3263901 Score: 336
Period size: 79 Copynumber: 4.2 Consensus size: 79
3263558 TTTTCATCTC
* * *
3263568 GGGATACTCCAATCCCGTTATTTCTGAGGGGATACTCTAACCCTAATTTTATTTCTAAAATATCA
1 GGGATACTCCAACCCCGTTATTTCTGAGGGGATACTCCAACCCCAATTTTATTTCTAAAATATCA
*
3263633 ATTTTTCACAATAG
66 ATTTTTCATAATAG
* ** * ***
3263647 GGGATACTCCAACCCCATTATTTCCAAGGGGATACTTCAACCCCAGCCTTATTTCT-AAATCATC
1 GGGATACTCCAACCCCGTTATTTCTGAGGGGATACTCCAACCCCAATTTTATTTCTAAAAT-ATC
*
3263711 AATTTTTCATAATCG
65 AATTTTTCATAATAG
* * * * * *
3263726 GAGATACTCCAACCCTGTTATTTTTGAGGGGATACTCCAACCCCGATTTCATTT-TCAAAATACC
1 GGGATACTCCAACCCCGTTATTTCTGAGGGGATACTCCAACCCCAATTTTATTTCT-AAAATATC
3263790 AATTTTT-ATAATCA-
65 AATTTTTCATAAT-AG
* * * *** * *
3263804 GGGATACTCCAACCCTGTTATTTTCGGA-GGGATACTCCAACCCCGATTTTATTTCTGGGACACC
1 GGGATACTCCAACCCCGTTA-TTTCTGAGGGGATACTCCAACCCCAATTTTATTTCTAAAATATC
* *
3263868 AATTTTCCATAATTG
65 AATTTTTCATAATAG
*
3263883 GGGATACTCCAGCCCCGTT
1 GGGATACTCCAACCCCGTT
3263902 GTTATCTCCA
Statistics
Matches: 209, Mismatches: 38, Indels: 16
0.79 0.14 0.06
Matches are distributed among these distances:
78 64 0.31
79 141 0.67
80 4 0.02
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (79 bp):
GGGATACTCCAACCCCGTTATTTCTGAGGGGATACTCCAACCCCAATTTTATTTCTAAAATATCA
ATTTTTCATAATAG
Found at i:3263824 original size:26 final size:27
Alignment explanation
Indices: 3263795--3263846 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 27
3263785 ATACCAATTT
3263795 TTATAATC-AGGGATACTCCAACCCTG
1 TTATAATCGAGGGATACTCCAACCCTG
**
3263821 TTATTTTCGGAGGGATACTCCAACCC
1 TTATAATC-GAGGGATACTCCAACCC
3263847 CGATTTTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 6 0.27
28 16 0.73
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (27 bp):
TTATAATCGAGGGATACTCCAACCCTG
Found at i:3263873 original size:157 final size:157
Alignment explanation
Indices: 3263556--3263847 Score: 371
Period size: 158 Copynumber: 1.9 Consensus size: 157
3263546 AAATTTTTAT
* * * *
3263556 ATTTTTCAT-CTCGGGATACTCCAATCCCGTTATTTCTGAGGGGATACTCTAACCCTAATTTTAT
1 ATTTTTCATAATCGGGATACTCCAATCCCGTTATTTCTGAGGGGATACTCCAACCCCAATTTCAT
* *
3263620 TTCTAAAATATCAATTTTTCACAATAGGGGATACTCCAACCCCATTATTTCCAAGGGGATACTTC
66 TTCTAAAATACCAATTTTTCACAATAGGGGATACTCCAACCCCATTATTTCCAAGGGGATACTCC
*
3263685 AACCCCAGCCTTATTTCTAAATCATCA
131 AACCCCAGCCTTATTTCTAAATCACCA
* *
3263712 ATTTTTCATAATCGGAGATACTCCAA-CCCTGTTATTTTTGAGGGGATACTCCAACCCCGATTTC
1 ATTTTTCATAATCGG-GATACTCCAATCCC-GTTATTTCTGAGGGGATACTCCAACCCCAATTTC
* ** * *
3263776 ATTT-TCAAAATACCAATTTTT-ATAATCA-GGGATACTCCAACCCTGTTATTTTC-GGAGGGAT
64 ATTTCT-AAAATACCAATTTTTCACAAT-AGGGGATACTCCAACCCCATTATTTCCAAG-GGGAT
3263837 ACTCCAACCCC
126 ACTCCAACCCC
3263848 GATTTTATTT
Statistics
Matches: 117, Mismatches: 13, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
156 10 0.09
157 49 0.42
158 58 0.50
ACGTcount: A:0.28, C:0.25, G:0.13, T:0.34
Consensus pattern (157 bp):
ATTTTTCATAATCGGGATACTCCAATCCCGTTATTTCTGAGGGGATACTCCAACCCCAATTTCAT
TTCTAAAATACCAATTTTTCACAATAGGGGATACTCCAACCCCATTATTTCCAAGGGGATACTCC
AACCCCAGCCTTATTTCTAAATCACCA
Found at i:3263879 original size:157 final size:157
Alignment explanation
Indices: 3263566--3263893 Score: 364
Period size: 157 Copynumber: 2.1 Consensus size: 157
3263556 ATTTTTCATC
* * * *
3263566 TCGGGATACTCCAATCCCGTTATTTCTGAGGGGATACTCTAACCCTAATTTTATTTCTAAAATAT
1 TCGGGATACTCCAATCCCGTTATTTCTGAGGGGATACTCCAACCCCAATTTCATTTCTAAAATAC
*
3263631 CAATTTTTCACAATAGGGGATACTCCAACCCCATTATTTCCAAGGGGATACTTCAACCCCAGCCT
66 CAATTTTTCACAATAGGGGATACTCCAACCCCATTATTTCCAAGGGGATACTCCAACCCCAGCCT
* *
3263696 TATTTCTAAATCATCAATTTTTCATAA
131 TATTTCTAAATCACCAATTTTCCATAA
* *
3263723 TCGGAGATACTCCAA-CCCTGTTATTTTTGAGGGGATACTCCAACCCCGATTTCATTT-TCAAAA
1 TCGG-GATACTCCAATCCC-GTTATTTCTGAGGGGATACTCCAACCCCAATTTCATTTCT-AAAA
* ** * *
3263786 TACCAATTTTT-ATAATCA-GGGATACTCCAACCCTGTTATTTTC-GGAGGGATACTCCAACCCC
63 TACCAATTTTTCACAAT-AGGGGATACTCCAACCCCATTATTTCCAAG-GGGATACTCCAACCCC
** **
3263848 -GATTTTATTTCTGGGA-CACCAATTTTCCATAA
126 AG-CCTTATTTCT-AAATCACCAATTTTCCATAA
*
3263880 TTGGGGATACTCCA
1 -TCGGGATACTCCA
3263894 GCCCCGTTGT
Statistics
Matches: 144, Mismatches: 19, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
156 2 0.01
157 80 0.56
158 62 0.43
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.34
Consensus pattern (157 bp):
TCGGGATACTCCAATCCCGTTATTTCTGAGGGGATACTCCAACCCCAATTTCATTTCTAAAATAC
CAATTTTTCACAATAGGGGATACTCCAACCCCATTATTTCCAAGGGGATACTCCAACCCCAGCCT
TATTTCTAAATCACCAATTTTCCATAA
Found at i:3265679 original size:20 final size:20
Alignment explanation
Indices: 3265654--3265706 Score: 106
Period size: 20 Copynumber: 2.6 Consensus size: 20
3265644 AAACCCTTGA
3265654 ATGTATCGATACACTCCTAG
1 ATGTATCGATACACTCCTAG
3265674 ATGTATCGATACACTCCTAG
1 ATGTATCGATACACTCCTAG
3265694 ATGTATCGATACA
1 ATGTATCGATACA
3265707 TGCTCATTGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (20 bp):
ATGTATCGATACACTCCTAG
Found at i:3265719 original size:19 final size:20
Alignment explanation
Indices: 3265695--3265747 Score: 81
Period size: 19 Copynumber: 2.7 Consensus size: 20
3265685 CACTCCTAGA
3265695 TGTATCGATACATGCTC-AT
1 TGTATCGATACATGCTCAAT
*
3265714 TGTATCGATACATGGTCAAT
1 TGTATCGATACATGCTCAAT
*
3265734 TTTATCGATACATG
1 TGTATCGATACATG
3265748 AGATTGGCAG
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 16 0.52
20 15 0.48
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (20 bp):
TGTATCGATACATGCTCAAT
Found at i:3265816 original size:13 final size:13
Alignment explanation
Indices: 3265798--3265822 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3265788 ATAAGATAAT
3265798 GTATCGATACATC
1 GTATCGATACATC
3265811 GTATCGATACAT
1 GTATCGATACAT
3265823 GATGGAATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
GTATCGATACATC
Found at i:3281241 original size:20 final size:20
Alignment explanation
Indices: 3281194--3281245 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
3281184 AAAACCCAGA
*
3281194 TGTATCAATACAACATTCCT
1 TGTATCGATACAACATTCCT
3281214 TGTATCGATACAACATTCCT
1 TGTATCGATACAACATTCCT
*
3281234 TGTCTCGATACA
1 TGTATCGATACA
3281246 TTGGGTACTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.31, C:0.25, G:0.10, T:0.35
Consensus pattern (20 bp):
TGTATCGATACAACATTCCT
Found at i:3283702 original size:13 final size:13
Alignment explanation
Indices: 3283684--3283733 Score: 65
Period size: 13 Copynumber: 4.2 Consensus size: 13
3283674 ACATACTACT
3283684 TTGTATCGATACA
1 TTGTATCGATACA
3283697 TTGTATCGATACA
1 TTGTATCGATACA
3283710 -TG-AT-GA-A-A
1 TTGTATCGATACA
3283718 TTGTATCGATACA
1 TTGTATCGATACA
3283731 TTG
1 TTG
3283734 CTTGTAACGG
Statistics
Matches: 32, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
8 1 0.03
9 3 0.09
10 4 0.12
11 4 0.12
12 3 0.09
13 17 0.53
ACGTcount: A:0.32, C:0.12, G:0.18, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:3286134 original size:475 final size:475
Alignment explanation
Indices: 3284465--3286257 Score: 1966
Period size: 475 Copynumber: 3.8 Consensus size: 475
3284455 TGAGCTTTCA
* * * * * ** *
3284465 TTTATGGTGCCTAATCCTGAAAGGAATGGGGATTTA-TATGACTATTCATGCTTGTCTTATTTTA
1 TTTACGGTGCCTAATCCTAAAAAGAATAGGGA-TTAGTATGAGTATTCATATTTGTCTTATTTAA
* * * *
3284529 GAGACAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAATCTTTTTTTGCGACACTAAAGCGTC
65 GAGACAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
* * * * * *
3284594 AATGCCTTGTATCCTAATGAAGAGAACAGGGTTTTGGTTCTCAATCTTGAAAAGATTGGAAACTG
130 AATGTCATGTATCCTAATGAAGAGAATATGTTTTTGGTTCCCAATCTTGAAAAGATTGGAAACTG
* * * *
3284659 TTGCGAGAATCGATAG-TTGTCTTATTTATGGGGA-GAACTTTGATTTTATGGAAAATAGGGCAA
195 TTACAAGAATCGAT-GCTTGTCTTATTTA-AGGGATGAACTTTGATTTTAAGGAAAATAGGGCAA
* * * *
3284722 AGAAAAGATTTCCATGCAAAATAAAATCATCAGTATCATTTATCCTAATGAGGAGAATATGTTTG
258 AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
* * **** * *
3284787 TAGTGTCTAATCACAAAATGATTGAAGATCATTACTAGAATTTGTGTTTGTCTC-ATTTAAGCAC
323 TAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAACCCATGTTTGTCTCAATTGAGGCAC
* * ** * *
3284851 GAACTTAAACTTTAAAAAAAATTGTGGGAAAAAAGCCTTTCTTGTGAAACCAAAGCTTTAATATC
388 GAACTTAGACTTT-ACAAAAATTGTGGGAAAAAAGCCTTTCTTGACAAACCAAAGCATCAATATC
3284916 ATGTATCCTAATAAGAAGACTATG
452 ATGTATCCTAATAAGAAGACTATG
* * *
3284940 TTTACAGTGCCTAATCCTAAAAAGAATGGGGATTTA-TATGAGTATTCATATTTGTCTCATTTAA
1 TTTACGGTGCCTAATCCTAAAAAGAATAGGGA-TTAGTATGAGTATTCATATTTGTCTTATTTAA
** * **
3285004 GAGACAAAAATTGACTT-TGTCAAAAAC-GTTGGAAAGAAAAGCTTTTCTTATGACACCAAAGCA
65 GAGACAAACTTTGA-TTCTATCAAAAACAG-TGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
* * * * *
3285067 TTAATGTCATGTATCCTAATGAAGAGAATGA-ATTTTTGGTTCCCAATCTTGAAAGGATTAGAGA
128 TCAATGTCATGTATCCTAATGAAGAGAAT-ATGTTTTTGGTTCCCAATCTTGAAAAGATTGGAAA
* ** * * *
3285131 TTGTTATGAGAATTGATGCTTGTCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGACA
192 CTGTTACAAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCA
* * * * *
3285196 AAGAAAAGATTTCCAGGCAGAAGAAAATCATCAATATCATTTATCCTTATTAGAAGAATGTGTTT
257 AAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTT
* * * * * * * * *
3285261 AGAGTACCTAATAACAAAATGAAT---GA--ATTACAACAACCCATGTCTGTATTATTTGAGGCA
322 ATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAACCCATGTTTGTCTCAATTGAGGCA
* * * * * ** * * *
3285321 CAAATTTAGATTTTTCAAAAAATTATGGG-AAAAAGCCTTT-TTGGTGAAGCCAAAGTATCAGTA
387 CGAACTTAGACTTTAC-AAAAATTGTGGGAAAAAAGCCTTTCTT-GACAAACCAAAGCATCAATA
* *
3285384 T-ATGTATCCTATTAAGAAGATTATG
450 TCATGTATCCTAATAAGAAGACTATG
* * * * * * * *
3285409 TTCATGGTGCCTGATCCTGAAAAGAATAGGGATCT-GTATGACTTTTCGTGTTTGTCTTATTTAA
1 TTTACGGTGCCTAATCCTAAAAAGAATAGGGAT-TAGTATGAGTATTCATATTTGTCTTATTTAA
* * * *
3285473 GAGACAAATTTTGATTCTATCAAAAACATTGGACAA-AAAAGCTTTACTTGCGACCCCAAAGCAT
65 GAGACAAACTTTGATTCTATCAAAAACAGTGGA-AAGAAAAGCTTTTCTTGCGACACCAAAGCAT
* * * * *
3285537 TAATGTCATGTATCCTAATGAAGGGAATGTG-TTTTGGTTCCCAATCTTGAAAAGTTTGGAGACT
129 CAATGTCATGTATCCTAATGAAGAGAATATGTTTTTGGTTCCCAATCTTGAAAAGATTGGAAACT
** *
3285601 GTTACAAGAATTAATGCTTGTCTTA-TTAATGGGATGAACTTTGATTTTAAGGAAAATAGGTCAA
194 GTTACAAGAATCGATGCTTGTCTTATTTAA-GGGATGAACTTTGATTTTAAGGAAAATAGGGCAA
* * * *
3285665 AGAAAAGATTTCCATGCAAAAGAAATTCATTAGTATCATTTATCCTATTGAGGAGAATGTGTTTA
258 AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
*
3285730 TAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAACCCATGTTTGTCTCAATTGAGGCAT
323 TAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAACCCATGTTTGTCTCAATTGAGGCAC
*
3285795 GAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCAT-ACAAATCCAAAGCATCAATAT
388 GAACTTAGACTTTACAAAAATT-GTGGGAAAAAAGCCTTTCTTGACAAA-CCAAAGCATCAATAT
* * *
3285859 CATTTATCTTAATGAGAAGACTATG
451 CATGTATCCTAATAAGAAGACTATG
* *
3285884 TTTACGGGGCCTAATCCTAAAAAG-ATCAGGGATTAGTATAAGTATTCATATTTGTCTTATTTAA
1 TTTACGGTGCCTAATCCTAAAAAGAAT-AGGGATTAGTATGAGTATTCATATTTGTCTTATTTAA
* ** * * *
3285948 GAGACAGACTTTGATTCTAAT-AAAAATGGTGGAAA-AAGAAACTTTTTTTGCGACACAAAAGCA
65 GAGACAAACTTTGATTCT-ATCAAAAACAGTGGAAAGAA-AAGCTTTTCTTGCGACACCAAAGCA
* * * * *
3286011 TCAATGACATGTATCCTAAAGAAAAGAATATGTTTTTGGTTCCCATTCTT-AGAAAGAATGGAAA
128 TCAATGTCATGTATCCTAATGAAGAGAATATGTTTTTGGTTCCCAATCTTGA-AAAGATTGGAAA
* * *
3286075 CTGTTACAAGAATCGATGCTTGTCTAATTTAAGGGATGAACTTTGGTTTTAA-CAAAATAGGGCA
192 CTGTTACAAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCA
* * * *
3286139 AAGAAAAGGTTTCCATACAAAA-AAAAGTCATCAATATCATTTATCCTAATAAGGATAATGTGTT
257 AAGAAAAGATTTCCATGCAAAAGAAAA-TCATCAATATCATTTATCCTAATGAGGAGAATGTGTT
* * * * *
3286203 CATAGTGCCAAATCACAAAATAAATGAAGATCATTACTAGTATCCATGTTTGTCT
321 TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAACCCATGTTTGTCT
3286258 ATAGCCTCTC
Statistics
Matches: 1094, Mismatches: 191, Indels: 66
0.81 0.14 0.05
Matches are distributed among these distances:
467 4 0.00
468 162 0.15
469 150 0.14
470 44 0.04
471 29 0.03
472 9 0.01
473 45 0.04
474 39 0.04
475 535 0.49
476 73 0.07
477 4 0.00
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (475 bp):
TTTACGGTGCCTAATCCTAAAAAGAATAGGGATTAGTATGAGTATTCATATTTGTCTTATTTAAG
AGACAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCA
ATGTCATGTATCCTAATGAAGAGAATATGTTTTTGGTTCCCAATCTTGAAAAGATTGGAAACTGT
TACAAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGA
AAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAG
TGCCTAATCACAAAATGAATGAAGATCATTACTAGAACCCATGTTTGTCTCAATTGAGGCACGAA
CTTAGACTTTACAAAAATTGTGGGAAAAAAGCCTTTCTTGACAAACCAAAGCATCAATATCATGT
ATCCTAATAAGAAGACTATG
Found at i:3286651 original size:432 final size:432
Alignment explanation
Indices: 3285844--3286674 Score: 1021
Period size: 432 Copynumber: 1.9 Consensus size: 432
3285834 TCATACAAAT
*
3285844 CCAAAGCATCAATATCATTTATCTTAATGAGAAGACTATGTTTACGGGGCCTAATCCTAAAAAGA
1 CCAAAGCATCAATATCATGTATCTTAATGAGAAGACTATGTTTACGGGGCCTAATCCTAAAAAGA
* * * *
3285909 TCAGGGATTAGTATAAGTATTCATATTTGTCTTATTTAAGAGACAGACTTTGATTCTAATAAAAA
66 TCAGGGATTAGTATAACTATTCATACTTATCTTATTTAAGAGACAAACTTTGATTCTAATAAAAA
** ** *
3285974 TGGTGGAAAAAGAAACTTTTTTTGCGACACAAAAGCATCAATGACATGTATCCTAAAGAAAAGAA
131 CAGAAGAAAAAGAAACTTTTTTTGCAACACAAAAGCATCAATGACATGTATCCTAAAGAAAAGAA
* * *
3286039 TATGTTTTTGGTTCCCATTCTTAGAAAGAATGGAAACTGTTACAAGAATCGATGCTTGTCTAATT
196 TAGGTTTTTGGTTCCCAATCTTAGAAAGAATGGAAACTGTTACAAGAATCGATGCTTGCCTAATT
* * * *
3286104 TAAGGGATGAACTTTGGTTTTAACAAAATAGGGCAAAGAAAAGGTTTCCATACAAAAAAAAGTCA
261 TAAGGGATGAACTTTGATTTTAACAAAATACGACAAAGAAAAGATTTCCATACAAAAAAAAGTCA
* * * * *
3286169 TCAATATCATTTATCCTAATAAGGATAATGTGTTCATAGTGCCAAATCACAAAATAAATGAAGAT
326 TCAATATCATTTATCCCAATAAGGAGAATGTCTTCATAGTGACAAATCACAAAATAAATCAAGAT
*
3286234 CATTACTAGTATCCATGTTTGTCTATAGCCTCTCTTGCGAAA
391 CACTACTAGTATCCATGTTTGTCTATAGCCTCTCTTGCGAAA
* * * * *
3286276 CCAAAGCATCAATATCGTGTATCCTT-ATTAGGAA-ACTATGTTTATGGTGCCTAATTCTAAAAA
1 CCAAAGCATCAATATCATGTAT-CTTAATGA-GAAGACTATGTTTACGGGGCCTAATCCTAAAAA
* * * * * *
3286339 GAAT-GGGGATTTGTATGACTATTCATGCTTATCTTATTTTAGAGACAAACTTTGATTC-CATCA
64 G-ATCAGGGATTAGTATAACTATTCATACTTATCTTATTTAAGAGACAAACTTTGATTCTAAT-A
* * * * * *
3286402 AAAACAGAAGAAAGAA-AATCTTTTTTTGTAACACTAAAGCATTAATGCCATGTATCCTAATGAA
127 AAAACAGAAGAAA-AAGAAACTTTTTTTGCAACACAAAAGCATCAATGACATGTATCCTAAAGAA
* * * * *
3286466 GAGAATGGGTTTTTGGTTCCCAATCTT-GAAAAGATTGGAGACTGTTACGAGAATCGATGCTTGC
191 AAGAATAGGTTTTTGGTTCCCAATCTTAG-AAAGAATGGAAACTGTTACAAGAATCGATGCTTGC
* * ** * * *
3286530 CTTA-TTAATGGGGTGAACTTTGATTTTATGGAAAATACGACAAAGAAAAGATTTCTATGCAAAC
255 CTAATTTAA-GGGATGAACTTTGATTTTA-ACAAAATACGACAAAGAAAAGATTTCCATACAAAA
* ** * *
3286594 AAAA-TCATCACTATCATTTATCCCAATAAGGAGAATGTCTTTGTAGTGACTAATCACAAAATGA
318 AAAAGTCATCAATATCATTTATCCCAATAAGGAGAATGTCTTCATAGTGACAAATCACAAAATAA
3286658 ATCAAGATCACTACTAG
383 ATCAAGATCACTACTAG
3286675 AATTTCTGCT
Statistics
Matches: 334, Mismatches: 57, Indels: 16
0.82 0.14 0.04
Matches are distributed among these distances:
431 7 0.02
432 286 0.86
433 41 0.12
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.31
Consensus pattern (432 bp):
CCAAAGCATCAATATCATGTATCTTAATGAGAAGACTATGTTTACGGGGCCTAATCCTAAAAAGA
TCAGGGATTAGTATAACTATTCATACTTATCTTATTTAAGAGACAAACTTTGATTCTAATAAAAA
CAGAAGAAAAAGAAACTTTTTTTGCAACACAAAAGCATCAATGACATGTATCCTAAAGAAAAGAA
TAGGTTTTTGGTTCCCAATCTTAGAAAGAATGGAAACTGTTACAAGAATCGATGCTTGCCTAATT
TAAGGGATGAACTTTGATTTTAACAAAATACGACAAAGAAAAGATTTCCATACAAAAAAAAGTCA
TCAATATCATTTATCCCAATAAGGAGAATGTCTTCATAGTGACAAATCACAAAATAAATCAAGAT
CACTACTAGTATCCATGTTTGTCTATAGCCTCTCTTGCGAAA
Found at i:3288768 original size:938 final size:933
Alignment explanation
Indices: 3286260--3289212 Score: 3490
Period size: 938 Copynumber: 3.1 Consensus size: 933
3286250 GTTTGTCTAT
* * * *
3286260 AGCCTCTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATTAGGAA-ACTATGTTTATGGT
1 AGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA-GAAGACTATGTTTATGGT
* * * * * * *
3286324 GCCTAATTCTAAAAAGAATGGGGATTTGTATGACTATTCATGCTTATCTTATTTTAGAGACAAAC
65 GCCTAATCCTTAAAAGAATAGGGATTTGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAAC
* * * * ** * *
3286389 TTTGATTCCATCAAAAACAGAAGAAAGAAAATC-TTTTTTTGTAACACTAAAGCATTAATGCCAT
130 TTTCATT-C-T--AAAA-AGTAGAAA-AATA-CATTTTCTTGCGACACCAAAGCATTAATGACAT
* * *
3286453 GTATCCTAATGAAGAGAATGGGTTTTTGGTTCCCAATCTTGAAAAGATTGGAGACTGTTACGAGA
188 GTATCATAATGAA-AGGATGTGTTTTTGGTTCCCAATCTTGAAAAGATTGGAGACTGTTACGAGA
* *
3286518 ATCGATGCTTGCCTTA-TTAATGGGGTGAACTTTGATTTTATGGAAAATACGACAAAGAAAAGA-
252 ATCGATGCTTGCCTTATTTAA-GGGATGAACTTTGATTTTATGGAAAATA-GGCAAAGAAAAGAT
* * * *
3286581 TTTCTATGCAAACAAAATCATCACTATCATTTATCCCAATAAGGAGAATGTCTTTGTAGTGA-CT
315 TTTC-ATGCAAAGAAAATCATCAC-ATCATTTATCCTAATAAAGAGAATGTCTTTATAGT-ACCT
* * * *
3286645 AATCACAAAATGAATCAAGATCACTACTAGAATTTCTGCTTGTCTTATTTGAGGCACAAACTTAG
377 AATCACAAAATG-AT-AAGAT-ATTACTAGAATTTATGTTTGTCTCATTTGAGGCACAAACTTAG
* * * * *
3286710 ACTTTACAAAAATTTATGGAAAAAAAACTTTTCTTGTA-AAACTAAAGTATCAATATTATGTATC
439 ACTTTACAAAAATTTGTGGGAAAAAAGCTTTTCTTG-AGAAACCAAAGTATCAATATCATGTATC
* * * *
3286774 TTAATAAGAAGACTATGTTTGTGGTGCCTAATCCTAAAAAGACTGGGGATTTCTATGAGTATTCA
503 CTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGACTGGGGATTTGTATGAGTATTCA
* * * *
3286839 TGTTTGTCCCATTTAAGAGACAAATTTTGATTCTATCAGAAATATTGGAAA-AAAAACTTTTCTT
568 TGTTTGTCTCATTTAAGAGACAAACTTTGATTCTATCAAAAATATTGGAAAGAAAAGCTTTTCTT
*
3286903 CCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGAATGTGTTTTGGTTCCCAATCTTGAA
633 GC-ACACCAAAGCATCAATGTCATGTATCCTAATGAAGGAATGTGTTTTGGTTCCCAATCTTGAA
* * * * *
3286968 AAGATAGGAGATTGTTACAAGAATCGATGTTTTTCTTATTTATGGGCTAAACTTTGATTTTAAGG
697 AAGATTGGAGATTGTTACAAGAATCGATGCTTGTCTTATTTA-GGGATGAACTTTGATTTTAAGG
** * * *
3287033 AAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATTGTTAGTATCATTTATCCTAATAAGG
761 AAAATAGGGC-AAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGG
* * *
3287098 AGAATGTGTTTATAGTGCCTAACCACAAAATGAATAAAGATCACTACTAGAATCCATGTTTGTCT
825 AGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCT
* * * *
3287163 CATTTAAGGCACGAACCTAGACTTTACGAAAATTTGTTGGAAAAA
890 CATTTAAGGCATGAACTTAGACTTTAC-AAAAATAGTTGGAAAAA
* * * * * *
3287208 AGCCTTTCTTACGAAACCAAAGCATCAATATCATTTATCGTAGTGAGAGGACTATGTTTATGGGG
1 AGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTG
* * * * * *
3287273 CCTAATCC-TAAATG---A-GGATTAGTGTAAGTATT-ATTGTTTGTCTTATTTAAGAGATAGAC
66 CCTAATCCTTAAAAGAATAGGGATTTGTATGAGTATTCA-TGTTTGTCTTATTTAAGAGACAAAC
* * * * *
3287332 TTTGATTCTACAAAAAACGGTAGAAAAAATAGATTTTTTTGCTACACCAAAGCATCAATGACATG
130 TTTCATTCT---AAAAA--GTAG-AAAAATACATTTTCTTGCGACACCAAAGCATTAATGACATG
* * * ** * * *
3287397 TATCTTAAAGAAGGGAATGTGTTTTTGGTTCATATTCTTGAAAAGATTGGAGACTATTACGTGAA
189 TATCATAATGAAAGG-ATGTGTTTTTGGTTCCCAATCTTGAAAAGATTGGAGACTGTTACGAGAA
* *
3287462 TTGATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAGGCAAAGAAAAGATTTC
253 TCGATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAGGCAAAGAAAAGATTTT
* * * * * * *
3287527 CATGTAAA-AGAAATCATTAATATCATTTATCCT-AGAGAGAAGAATGTGTTTATAGTGCCTAAT
318 CATGCAAAGA-AAATCA-TCACATCATTTATCCTAATAAAG-AGAATGTCTTTATAGTACCTAAT
** * *
3287590 CAC-AAA--AT--GA-ATTACTAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTA
380 CACAAAATGATAAGATATTACTAGAATTTATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTA
* * * * *
3287649 -AAGAAATTGGTGGGAAAAAAGCTTTTCTTGAGAATCCAAAGTGTCAATATCATGTTTCCTGATG
445 CAA-AAATTTGTGGGAAAAAAGCTTTTCTTGAGAAACCAAAGTATCAATATCATGTATCCTAATG
* * * *
3287713 AGAAGACTATATTTATGGTGCCTAATCCTTAAAATATTGGGGATTTGTATGAGTATTCATGTTTG
509 AGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGACTGGGGATTTGTATGAGTATTCATGTTTG
* * *
3287778 TCTTATTTAAGAGACAAACTTTGAATCTATCAAAAATGTTGGAAAGAAAAGCTTTTCTTGCATCA
574 TCTCATTTAAGAGACAAACTTTGATTCTATCAAAAATATTGGAAAGAAAAGCTTTTCTTGCA-CA
* * *
3287843 CCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATCTGTTTTTAGTTCCCAATCTTGAAAGGA
638 CCAAAGCATCAATGTCATGTATCCTAATGAA-GGAATGTG-TTTTGGTTCCCAATCTTGAAAAGA
* ** *
3287908 TTGGAGATTATTAGGAGAATCGATGCTTGTCTTATTTGAGGGATGAACTTTAATTTTAAGGAAAA
701 TTGGAGATTGTTACAAGAATCGATGCTTGTCTTATTT-AGGGATGAACTTTGATTTTAAGGAAAA
* *
3287973 TAGGGCAGAGAAAAGATTTCCACGCAAAAGAAAATCATCAATTTCATTTATCCT-ATGGAGGAGA
765 TAGGGCA-AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT-GAGGAGA
**
3288037 ATGTGTTTATAGTGCCCGATCACAAAATGAATGAAGATCATTACTAGAA-CCATGTTTGTCTCAT
828 ATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCAT
* * * *
3288101 TTGAGGCATGAACTTAGACTGTGCAAAAATCAGTGGGAAAAA
893 TTAAGGCATGAACTTAGACTTTACAAAAAT-AGTTGGAAAAA
* * * * * * *
3288143 TGCCTTTCTTGTGAATCCAAAGCATCGATATCATGTCTCTTAATGAGAAGACTATGTTTATGGTT
1 AGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTG
* *
3288208 CATAATCCTTAAAAGAATAGGGATTTGTATGAGTATTCATGTTTGTCTTATTTAAGAGAGAAACT
66 CCTAATCCTTAAAAGAATAGGGATTTGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACT
** * *
3288273 TTCATGT-T-GGAA-T-G-AAAA-ACA-TTTCTTGCGACACCAAAGCATTAGTGTCATGTATCAT
131 TTCAT-TCTAAAAAGTAGAAAAATACATTTTCTTGCGACACCAAAGCATTAATGACATGTATCAT
* * *
3288331 AATGAAAGGATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGAAAACTGTTACGAGAATCGATGC
195 AATGAAAGGATGTGTTTTTGGTTCCCAATCTTGAAAAGATTGGAGACTGTTACGAGAATCGATGC
** * * * *
3288396 TTGTTTTATTTAAGGGATGAACTTTGATTTTAGGGTAAATAGGGCAAAAAAAAGATTTTCGTGCA
260 TTGCCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATA-GGCAAAGAAAAGATTTTCATGCA
* * *
3288461 AGAGAAAATCATCAGCATCATTTATCCTAATAAAGAGAATGTTTTTATACTACCGAATCACAAAA
324 A-AGAAAATCATCA-CATCATTTATCCTAATAAAGAGAATGTCTTTATAGTACCTAATCACAAAA
3288526 TGATTAAAGATTATTACTAGAATTTATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAA
387 TGA-T-AAGA-TATTACTAGAATTTATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAA
* * * * * *
3288591 AATTTGTGGGAAAAAAGCCTTTCTTGCGAAACCAGAGCATCAATATCATATATCCTAATGAGAAT
449 AATTTGTGGGAAAAAAGCTTTTCTTGAGAAACCAAAGTATCAATATCATGTATCCTAATGAGAAG
* * * *
3288656 AGTATGTTTATGGTGCCTAATCCTAAAAAGAGTGGGGATTTGTATGAATATTCATGTCTGTCTC-
514 ACTATGTTTATGGTGCCTAATCCTAAAAAGACTGGGGATTTGTATGAGTATTCATGTTTGTCTCA
* * *
3288720 GTTATAGAGACAAACTTTGATTTTGTCAAAAATATTGGAAAGAAAAGCTTTTCTTGCAACACCAA
579 TTTA-AGAGACAAACTTTGATTCTATCAAAAATATTGGAAAGAAAAGCTTTTCTTGC-ACACCAA
3288785 AGCATCAATGTCATGTATCCTAATGGAAGGAATGTGATTTTGGTTCCCAATCTTGAAAAGATTGG
642 AGCATCAATGTCATGTATCCTAAT-GAAGGAATGTG-TTTTGGTTCCCAATCTTGAAAAGATTGG
* *
3288850 AGACTGTTACAAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGG
705 AGATTGTTACAAGAATCGATGCTTGTCTTATTT-AGGGATGAACTTTGATTTTAAGGAAAATAGG
* * * * * *
3288915 GCAAGGAAAAGATTTCTATGTAAATGAAAAGCAACAATATCATTTATCTTAATGAGGAGAATGTG
769 GCAA-GAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG
** *
3288980 TTTATAGTGCCTAATCACAAAATGAATGAAGATTGTTACTAGAATCTATGTTTGTCTCATTTAAG
833 TTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAG
* *
3289045 GC-TCGAACTTAGACTTTACAAAAAGTGGTTGAAAAAA
898 GCAT-GAACTTAGACTTTACAAAAA-TAGTTGGAAAAA
* * *
3289082 AGCCTTTCTTGCAAAACAAAAGCATCAATATCATGTATCCTAACGAGAAGACTATGTTTATGGTG
1 AGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTG
* * * *
3289147 CCTAAACCTAAAAAAAAT-GGGATTTGTATGAGTATTCATGTTTGTTTTATTTAAGAGACAAACT
66 CCTAATCCTTAAAAGAATAGGGATTTGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACT
3289211 TT
131 TT
3289213 GGTTCTATCA
Statistics
Matches: 1700, Mismatches: 251, Indels: 118
0.82 0.12 0.06
Matches are distributed among these distances:
927 84 0.05
928 60 0.04
929 43 0.03
930 12 0.01
932 5 0.00
933 189 0.11
934 51 0.03
935 115 0.07
936 181 0.11
937 5 0.00
938 466 0.27
939 124 0.07
940 44 0.03
941 11 0.01
942 66 0.04
943 172 0.10
944 7 0.00
947 6 0.00
948 59 0.03
ACGTcount: A:0.35, C:0.13, G:0.18, T:0.33
Consensus pattern (933 bp):
AGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTG
CCTAATCCTTAAAAGAATAGGGATTTGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACT
TTCATTCTAAAAAGTAGAAAAATACATTTTCTTGCGACACCAAAGCATTAATGACATGTATCATA
ATGAAAGGATGTGTTTTTGGTTCCCAATCTTGAAAAGATTGGAGACTGTTACGAGAATCGATGCT
TGCCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAGGCAAAGAAAAGATTTTCATGCAAA
GAAAATCATCACATCATTTATCCTAATAAAGAGAATGTCTTTATAGTACCTAATCACAAAATGAT
AAGATATTACTAGAATTTATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTTGT
GGGAAAAAAGCTTTTCTTGAGAAACCAAAGTATCAATATCATGTATCCTAATGAGAAGACTATGT
TTATGGTGCCTAATCCTAAAAAGACTGGGGATTTGTATGAGTATTCATGTTTGTCTCATTTAAGA
GACAAACTTTGATTCTATCAAAAATATTGGAAAGAAAAGCTTTTCTTGCACACCAAAGCATCAAT
GTCATGTATCCTAATGAAGGAATGTGTTTTGGTTCCCAATCTTGAAAAGATTGGAGATTGTTACA
AGAATCGATGCTTGTCTTATTTAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAGAAAAGAT
TTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
ATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGA
CTTTACAAAAATAGTTGGAAAAA
Found at i:3289151 original size:158 final size:158
Alignment explanation
Indices: 3288516--3289151 Score: 451
Period size: 159 Copynumber: 4.0 Consensus size: 158
3288506 TATACTACCG
* * *
3288516 AATCACAAAATGATTAAAGATTATTACTAGAATTT-ATGTTTGTCTCATTTGAGGCACAAACTTA
1 AATCACAAAATGATTGAAGATTGTTACTAGAATTTCATGTTTGTCTCATTTAAGGCACAAACTTA
* * * * * * *
3288580 GACTTTACAAAAATTTGTGGGAAAAAAGCCTTTCTTGCGAAACCAGAGCATCAATATCATATATC
66 GACTTTACAAAAA-TGGTTGAAAAAAAGCCTTTCTTGCAAAACAAAAGCATCAATATCATGTATC
* *
3288645 CTAATGAGAATAGTATGTTTATGGTGCCT
130 CTAATGAGAAGAATATGTTTATGGTGCCT
* * ** * *
3288674 AATC-CTAAAAAGAGTGGGGATT-TGTA-T-GAATATTCATGTCTGTCTC-GTTATAGAG-ACAA
1 AATCAC-AAAATGATTGAAGATTGT-TACTAGAAT-TTCATGTTTGTCTCATTTA-AG-GCACAA
* * * * * * * *
3288733 ACTTTGATTTTGTCAAAAAT-ATTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTC
61 ACTTAGACTTT-ACAAAAATGGTT-GAAA-AAAAGCCTTTCTTGCAAAACAAAAGCATCAATATC
* * *
3288797 ATGTATCCTAATG-GAAGGAATGTGATTT-TGGTTCCC
123 ATGTATCCTAATGAGAA-GAATATG-TTTATGGTGCCT
** * * * * * * * **
3288833 AATCTTGAAAA-GATTGGAGACTGTTACAAGAA-TTGATGCTTGTCTTATTTAAGGGATGAACTT
1 AATC-ACAAAATGATTGAAGATTGTTACTAGAATTTCATGTTTGTCTCATTTAAGGCACAAACTT
* * * * * ** *
3288896 TGATTTTA-AGGAAAATAGG--GCAAGGAAAAG-ATTTCTATGTAAATGAAAAGCAACAATATCA
65 AGACTTTACA--AAAAT-GGTTG-AA-AAAAAGCCTTTCT-TGCAAAACAAAAGCATCAATATCA
* * * * *
3288957 TTTATCTTAATGAGGAGAATGTGTTTATAGTGCCT
124 TGTATCCTAATGAGAAGAATATGTTTATGGTGCCT
* * * *
3288992 AATCACAAAATGAATGAAGATTGTTACTAGAATCT-ATGTTTGTCTCATTTAAGGCTCGAACTTA
1 AATCACAAAATGATTGAAGATTGTTACTAGAATTTCATGTTTGTCTCATTTAAGGCACAAACTTA
3289056 GACTTTACAAAAAGTGGTTGAAAAAAAGCCTTTCTTGCAAAACAAAAGCATCAATATCATGTATC
66 GACTTTACAAAAA-TGGTTGAAAAAAAGCCTTTCTTGCAAAACAAAAGCATCAATATCATGTATC
* *
3289121 CTAACGAGAAGACTATGTTTATGGTGCCT
130 CTAATGAGAAGAATATGTTTATGGTGCCT
3289150 AA
1 AA
3289152 ACCTAAAAAA
Statistics
Matches: 363, Mismatches: 81, Indels: 68
0.71 0.16 0.13
Matches are distributed among these distances:
156 4 0.01
157 9 0.02
158 124 0.34
159 207 0.57
160 16 0.04
161 3 0.01
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.32
Consensus pattern (158 bp):
AATCACAAAATGATTGAAGATTGTTACTAGAATTTCATGTTTGTCTCATTTAAGGCACAAACTTA
GACTTTACAAAAATGGTTGAAAAAAAGCCTTTCTTGCAAAACAAAAGCATCAATATCATGTATCC
TAATGAGAAGAATATGTTTATGGTGCCT
Found at i:3289395 original size:62 final size:62
Alignment explanation
Indices: 3289246--3290054 Score: 971
Period size: 62 Copynumber: 13.1 Consensus size: 62
3289236 GAAAAGCTTT
* * * *
3289246 TCTTTAAGGAGTAAAGGGTGCCACCAACTCGTGTGGGCTTTAAAAAG-AAAAGGTGTCCTAT
1 TCTTTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAAGGCGTCCTAC
* * * *
3289307 TCTTTGAGGACTAAAGGGTGCCACCAATTTGTGTGAGCTTTAAAAAGAAAAAGGCGTCCTGC
1 TCTTTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAAGGCGTCCTAC
* * * * ** *
3289369 TCTTTGAGGACTAAAGGGTGCTACCAACTCATGTGGGCTTTAAAAAGGAAATGGTATCCTGC
1 TCTTTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAAGGCGTCCTAC
* * * * * * * *
3289431 TTTTTGAGGACTAAAGGGTACCACCAACTTC-TATGGGCTTTGAAAAGGAAAAAAGCATCATGC
1 TCTTTGAGGACTAAAGGGTGCCACCAAC-TCGTGTGGGCTTT-AAAAAGAAAAAGGCGTCCTAC
* * *
3289494 TCTTTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTAAGAAGAAAAAGGCATCTTAC
1 TCTTTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAAGGCGTCCTAC
* * * * * * * * * *
3289556 TTTTTGATGACTAAAAGGTGCCACTAACTAGTGGGGGCTTTGAAAAGAAAAAGGCATCGTGC
1 TCTTTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAAGGCGTCCTAC
* * *
3289618 TCTTTGGGGACTAAAGGGTGCCACCAACTCATGTGGGCTTTAAAAAGAAAAAGTCGTCCTAC
1 TCTTTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAAGGCGTCCTAC
* * * * *
3289680 TCTTTGAGGACTAAAAGGTGCCACCAACTCATATGGGC-TTAAAACGAAAAAGGCATCCTAC
1 TCTTTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAAGGCGTCCTAC
* * * *
3289741 TCTTTGAGGACTAAAAGATGCCACCAACTCGTGTGAGCTTTAAAAAGAAAAAGGCGTCCTGC
1 TCTTTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAAGGCGTCCTAC
* * ** *
3289803 TTTTTGAGGACTAAAGGGTGCCACCAACTCGTCTAAGCTTTAAAAAGAAAAAGGCGTCCTAT
1 TCTTTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAAGGCGTCCTAC
* * * * * *
3289865 TCTTTAAGGACTAAAGGGTGCCACTAACTCATGTAGGCTTT-AAAAGAAAAATGCATCCTAC
1 TCTTTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAAGGCGTCCTAC
* * *
3289926 TCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTT-AAAAGAAAAAAGCGTCCTGC
1 TCTTTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAAGGCGTCCTAC
** * *
3289987 TCTTTGAGGACTAAAAAGTGCCACTAACTCGTGTGGGCTTTAAAAAGAAAAAGGTGTCCTAC
1 TCTTTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAAGGCGTCCTAC
3290049 TCTTTG
1 TCTTTG
3290055 TTGTATGTAA
Statistics
Matches: 642, Mismatches: 100, Indels: 11
0.85 0.13 0.01
Matches are distributed among these distances:
61 205 0.32
62 385 0.60
63 52 0.08
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.25
Consensus pattern (62 bp):
TCTTTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAAGGCGTCCTAC
Found at i:3289816 original size:185 final size:185
Alignment explanation
Indices: 3289246--3290054 Score: 1027
Period size: 185 Copynumber: 4.4 Consensus size: 185
3289236 GAAAAGCTTT
* * * *
3289246 TCTTTAAGGAGTAAAGGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAGGT-GTCCTATTCT
1 TCTTTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAAGTCGTCCTACTCT
* ** * * *
3289310 TTGAGGACTAAAGGGTGCCACCAATTTGTGTGAGCTTTAAAAAGAAAAAGGCGTCCTGCTCTTTG
66 TTGAGGACTAAAGGGTGCCACCAACTCATGTGGGCTTT-AAAAGAAAAAGGCATCCTACTCTTTG
* * * * * *
3289375 AGGACTAAAGGGTGCTACCAACTCATGTGGGCTTTAAAAAGGAAATGGTATCCTGC
130 AGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAAGGCATCCTGC
* * * * * * *
3289431 TTTTTGAGGACTAAAGGGTACCACCAACTTC-TATGGGCTTTGAAAAGGAAAAAAG-CATCATGC
1 TCTTTGAGGACTAAAGGGTGCCACCAAC-TCGTGTGGGCTTT-AAAAAG-AAAAAGTCGTCCTAC
* * *
3289494 TCTTTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTAAGAAGAAAAAGGCATCTTACTTT
63 TCTTTGAGGACTAAAGGGTGCCACCAACTCATGTGGGCTTTAA-AAGAAAAAGGCATCCTACTCT
* * * * * *
3289559 TTGATGACTAAAAGGTGCCACTAACTAGTGGGGGCTTTGAAAAGAAAAAGGCATCGTGC
127 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAAGGCATCCTGC
* *
3289618 TCTTTGGGGACTAAAGGGTGCCACCAACTCATGTGGGCTTTAAAAAGAAAAAGTCGTCCTACTCT
1 TCTTTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAAGTCGTCCTACTCT
* *
3289683 TTGAGGACTAAAAGGTGCCACCAACTCATATGGGC-TTAAAACGAAAAAGGCATCCTACTCTTTG
66 TTGAGGACTAAAGGGTGCCACCAACTCATGTGGGCTTTAAAA-GAAAAAGGCATCCTACTCTTTG
* * *
3289747 AGGACTAAAAGATGCCACCAACTCGTGTGAGCTTTAAAAAGAAAAAGGCGTCCTGC
130 AGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAAGGCATCCTGC
* * ** * *
3289803 TTTTTGAGGACTAAAGGGTGCCACCAACTCGTCTAAGCTTTAAAAAGAAAAAGGCGTCCTATTCT
1 TCTTTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAAGTCGTCCTACTCT
* * * *
3289868 TTAAGGACTAAAGGGTGCCACTAACTCATGTAGGCTTTAAAAGAAAAATGCATCCTACTCTTTGA
66 TTGAGGACTAAAGGGTGCCACCAACTCATGTGGGCTTTAAAAGAAAAAGGCATCCTACTCTTTGA
* *
3289933 GGACTAAAAGGTGCCACCAACTCGTGTGGGCTTT-AAAAGAAAAAAGCGTCCTGC
131 GGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAAGGCATCCTGC
** *
3289987 TCTTTGAGGACTAAAAAGTGCCACTAACTCGTGTGGGCTTTAAAAAGAAAAAGGT-GTCCTACTC
1 TCTTTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAA-GTCGTCCTACTC
3290051 TTTG
65 TTTG
3290055 TTGTATGTAA
Statistics
Matches: 535, Mismatches: 79, Indels: 21
0.84 0.12 0.03
Matches are distributed among these distances:
184 77 0.14
185 252 0.47
186 62 0.12
187 144 0.27
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.25
Consensus pattern (185 bp):
TCTTTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAAGTCGTCCTACTCT
TTGAGGACTAAAGGGTGCCACCAACTCATGTGGGCTTTAAAAGAAAAAGGCATCCTACTCTTTGA
GGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAAGAAAAAGGCATCCTGC
Found at i:3296375 original size:51 final size:51
Alignment explanation
Indices: 3296314--3296421 Score: 153
Period size: 51 Copynumber: 2.1 Consensus size: 51
3296304 GGGTTAGAGC
* *
3296314 ATCCCCGATGGTGAAAAATTGGTGCTTTAGAAATAAAATAGGGATTGGAGT
1 ATCCCCGATGGTGAAAAATTGATGCTTTAGAAATAAAATAGGGATTGGAAT
* * * * *
3296365 ATCCTCGATGGTGGAAAATTGATGTTTTAGAAATAAAATCGGGTTTGGAAT
1 ATCCCCGATGGTGAAAAATTGATGCTTTAGAAATAAAATAGGGATTGGAAT
3296416 ATCCCC
1 ATCCCC
3296422 TCAAAAATAA
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (51 bp):
ATCCCCGATGGTGAAAAATTGATGCTTTAGAAATAAAATAGGGATTGGAAT
Found at i:3296413 original size:130 final size:127
Alignment explanation
Indices: 3296176--3296499 Score: 366
Period size: 130 Copynumber: 2.5 Consensus size: 127
3296166 AAAACAACAA
* * * * * *
3296176 GGTTAGAGTATCCCTGATGGTAAGAAATTGATATTTGGAAATAAAAATATGGTTGAAGTATCCTC
1 GGTTAGAGCATCCCCGATGGTAA-AAATTGGTATTTAGAAAT-AAAATAGGGTTGGAGTATCCTC
* * * *
3296241 GGTGGTGAAAAGTCGATATTTTGGAAATAAAATCGAGGTTGGAGTATTCCCTCAAAAATAACGG
64 GATGGTGAAAAGTCGATATTTTAGAAATAAAATCGAGGTTGGAATATCCCCTCAAAAATAACGG
*
3296305 GGTTAGAGCATCCCCGATGGTGAAAAATTGGTGCTTTAGAAATAAAATAGGGATTGGAGTATCCT
1 GGTTAGAGCATCCCCGATGGT-AAAAATTGGT-ATTTAGAAATAAAATAGGG-TTGGAGTATCCT
* *
3296370 CGATGGTGGAAAA-TTGATGTTTTAGAAATAAAATCG-GGTTTGGAATATCCCCTCAAAAATAAC
63 CGATGGT-GAAAAGTCGATATTTTAGAAATAAAATCGAGG-TTGGAATATCCCCTCAAAAATAAC
3296433 GG
126 GG
* * ** * *
3296435 GGTTGGA-CTATCCTCGATGGTAGAAAATCAGTATTTTAAAAATAAAATCGGGTTGGAGTATCCT
1 GGTTAGAGC-ATCCCCGATGGTA-AAAATTGGTA-TTTAGAAATAAAATAGGGTTGGAGTATCCT
3296499 C
63 C
3296500 TCGGAAACAA
Statistics
Matches: 167, Mismatches: 20, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
129 51 0.31
130 111 0.66
131 5 0.03
ACGTcount: A:0.35, C:0.12, G:0.25, T:0.29
Consensus pattern (127 bp):
GGTTAGAGCATCCCCGATGGTAAAAATTGGTATTTAGAAATAAAATAGGGTTGGAGTATCCTCGA
TGGTGAAAAGTCGATATTTTAGAAATAAAATCGAGGTTGGAATATCCCCTCAAAAATAACGG
Found at i:3296635 original size:79 final size:78
Alignment explanation
Indices: 3296358--3296637 Score: 312
Period size: 79 Copynumber: 3.6 Consensus size: 78
3296348 AAAATAGGGA
* * * * *
3296358 TTGGAGTATCCTCGATGGTGGAAAAT-TGATGTTTTAGAAATAAAATCGGGTTTGGAATATCCCC
1 TTGGAGTATCCCCGATGGTAGAAAATCAG-TATTTTAGAAATAAAATCGGG-TTGGAGTATCCCC
* *
3296422 TCAAAAATAACGGGG
64 TCGAAAATAATGGGG
* * * *
3296437 TTGGACTATCCTCGATGGTAGAAAATCAGTATTTTAAAAATAAAATCGGGTTGGAGTATCCTCTC
1 TTGGAGTATCCCCGATGGTAGAAAATCAGTATTTTAGAAATAAAATCGGGTTGGAGTATCCCCTC
* * **
3296502 GGAAACAATAAGG
66 GAAAATAATGGGG
* * * *
3296515 TTGGAGTATCCCCGATGATAGAAAGTGAGTATTTTAGAAATAAAATTGAGGTTGGAGTATCCCCT
1 TTGGAGTATCCCCGATGGTAGAAAATCAGTATTTTAGAAATAAAATCG-GGTTGGAGTATCCCCT
3296580 CGAAAATAATGGGG
65 CGAAAATAATGGGG
* * *
3296594 TTGGCGTATCCCCGATGGTGGAAAATCAGT-TTTTTGAAAATAAA
1 TTGGAGTATCCCCGATGGTAGAAAATCAGTATTTTAG-AAATAAA
3296638 CCGGGGTTTG
Statistics
Matches: 167, Mismatches: 31, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
78 66 0.40
79 100 0.60
80 1 0.01
ACGTcount: A:0.34, C:0.13, G:0.24, T:0.29
Consensus pattern (78 bp):
TTGGAGTATCCCCGATGGTAGAAAATCAGTATTTTAGAAATAAAATCGGGTTGGAGTATCCCCTC
GAAAATAATGGGG
Found at i:3296645 original size:157 final size:156
Alignment explanation
Indices: 3296358--3296653 Score: 384
Period size: 157 Copynumber: 1.9 Consensus size: 156
3296348 AAAATAGGGA
* * * * *
3296358 TTGGAGTATCCTCGATGGTGGAAAATTGATGTTTTAGAAATAAAATCGGGTTTGGAATATCCCCT
1 TTGGAGTATCCCCGATGATAGAAAAGTGATATTTTAGAAATAAAATCGGGTTTGGAATATCCCCT
* *
3296423 CAAAAATAACGGGGTTGGACTATCCTCGATGGTAGAAAATCAGTATTTTAAAAATAAAATCGGGT
66 CAAAAATAACGGGGTTGGACTATCCCCGATGGTAGAAAATCAGTATTTTAAAAATAAAACCGGGT
3296488 TGGAGTATCCTCTCGGAAACAATAAGG
131 TGG-GTATCCTCTCGGAAACAATAAGG
* *
3296515 TTGGAGTATCCCCGATGATAG-AAAGTGAGTATTTTAGAAATAAAATTGAGG-TTGGAGTATCCC
1 TTGGAGTATCCCCGATGATAGAAAAGTGA-TATTTTAGAAATAAAATCG-GGTTTGGAATATCCC
* * * * *
3296578 CTCGAAAATAATGGGGTTGG-CGTATCCCCGATGGTGGAAAATCAGTTTTTTGAAAAT-AAACCG
64 CTCAAAAATAACGGGGTTGGAC-TATCCCCGATGGTAGAAAATCAGTATTTTAAAAATAAAACC-
*
3296641 GGGTTTGGTATCC
127 GGGTTGGGTATCC
3296654 CCGATGGTGG
Statistics
Matches: 120, Mismatches: 15, Indels: 9
0.83 0.10 0.06
Matches are distributed among these distances:
156 17 0.14
157 101 0.84
158 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (156 bp):
TTGGAGTATCCCCGATGATAGAAAAGTGATATTTTAGAAATAAAATCGGGTTTGGAATATCCCCT
CAAAAATAACGGGGTTGGACTATCCCCGATGGTAGAAAATCAGTATTTTAAAAATAAAACCGGGT
TGGGTATCCTCTCGGAAACAATAAGG
Found at i:3297909 original size:158 final size:156
Alignment explanation
Indices: 3297746--3302661 Score: 489
Period size: 159 Copynumber: 31.2 Consensus size: 156
3297736 AATTGGTTGG
* *
3297746 AAAAAAGCCTTTCTTGCGAAATCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTG
1 AAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTA
* *
3297811 TAGTGCCTAATCCTAAAAAGAATGGGGA-TGTATGAAAATTCATGTTTATCTCATTTAAGAGACA
66 TAGTGCCTAATCCTAAAAAGAATGGAGATTGTATGAGAATTCATGTTTATCTCATTTAAGAGACA
*
3297875 AATATTGATTTTGTTAAAAATGTTGGAA
131 AAT-TTGATTTT-TCAAAAATGTTGGAA
* * *
3297903 AGAAAAA-CTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGA-AGAGA--ATGGC
1 A-AAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGA-AGACTAT-G-
* * * * * * * * * ** *
3297964 TTT-TGGTTCCCAATCTTGAAAAGATTGGAGACTGTTACGAGAA-TCGATGCTCGTCTTATTTAT
62 TTTATAGTGCCTAATCCTAAAAAGAATGGAGATTG-TATGAGAATTC-ATGTTTATCTCATTTA-
* * * * *
3298027 GGTGTGC-ACTTTGA-TTTTAAGAAAATAG--GGCAA
124 AGAG-ACAAATTTGATTTTTCA-AAAAT-GTTGG-AA
* ** ** * * * * *
3298060 AGAAAATACTTT-TATGCGAAAGAAAAATCATCAGTATCAT-TGATCATAATGAGAAGAATGTGT
1 AAAAAAGCCTTTCT-TGCGAAA-CCAAAGCATCAATATCATGT-ATCCTAATGAGAAGACTATGT
* * * ** * * *
3298123 TTATAGTGCCTAATCAC-AAAATGAATGAAAATCACTACT-AGAATTTATGTTTATCTTATTTGA
63 TTATAGTGCCTAATC-CTAAAAAGAATGGAGAT-TGTA-TGAGAATTCATGTTTATCTCATTTAA
* * * * **
3298186 G-GCATAAACTTAGACTTTACAAAAAT-TTGTGGG
125 GAG-ACAAA-TTTGATTTTTCAAAAATGTTG-GAA
* * * *
3298219 AAAAAAGCCTTTCTTGTGAAATCAAAGCATCAATATCATGTATCTTAGTGAGAAGACTATGTTTA
1 AAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTA
* * * *
3298284 TCA-TGCCTAATCCTAAAAAGAAAGGGGATTTGTATGAGTATTCATGTTTGTCTCATTTAAGAGA
66 T-AGTGCCTAATCCTAAAAAGAATGGAGA-TTGTATGAGAATTCATGTTTATCTCATTTAAGAGA
*
3298348 CAAACTTTGATTTTGTCAAAAACGTTGGAA
129 CAAA-TTTGATTTT-TCAAAAATGTTGGAA
* * * * * * **
3298378 AAAAAAGCTTTTTTTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGTAG-AGAATGGGTT
1 AAAAAAGC-CTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG-AGAAGACTATGTT
* * * * * ** * * * * ** * * *
3298442 TTTGGTTCCCACTATTGAAAGGAATAGAGACTGTTATGAGAATTGGTGCTTGTCTTATTTAA-AG
64 TATAGTGCCTAATCCTAAAAAGAATGGAGATTG-TATGAGAATTCATGTTTATCTCATTTAAGA-
* * ** *
3298506 GATGAATTTTGATTTTATGGAAAAT-AT-GACA
127 GA-CAAATTTGATTTT-TCAAAAATGTTGGA-A
* * ** * **** * * * * * * *
3298537 AAGAAAAGACTTCCAAGTAGAAGA--AATTTGTCAAAATCATTTATCC-ATTTAAGGAGAATGTG
1 AA-AAAAGCCTTTCTTG-CGAA-ACCAAAGCATCAATATCATGTATCCTA-ATGAGAAGACTATG
* * * ** * * * * * *
3298599 TTTATAGAGCCTAAACAC-AAAATA-AAT-GA-A-T-AACAATAATCCATATTTGTCTTATTTGA
62 TTTATAGTGCCTAATC-CTAAAA-AGAATGGAGATTGTATGAGAATTCATGTTTATCTCATTTAA
* *
3298658 G-GCACAAACTTAGACTTTTCAAAAAT-TT--AA
125 GAG-ACAAA-TTTGATTTTTCAAAAATGTTGGAA
* * * **
3298688 GGGAAAAAG-CTTTTTTGTTGAAACCAAAGCATCAATATCATGTATCCTTTTGAGAAGACTATGT
1 --AAAAAAGCCTTTCTTG-CGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGT
* * ** * * * *
3298752 TTATAGTGCCTAGTCCTGAAAAGAATGTG-GATTTGT-TGACTATTCAGGCTTATCTTATTTATG
63 TTATAGTGCCTAATCCTAAAAAGAATG-GAGA-TTGTATGAGAATTCATGTTTATCTCATTTAAG
* * * * *
3298815 -GCCTAAACTTTGGTTCTACTAAAAACGTTGGAA
126 AGAC-AAA-TTTGATTTTTC-AAAAATGTTGGAA
* ** * ** * * * **
3298848 AGAAAAGATTTTTTTGCGACGCTAAAGCATCAATGTCATGTATCCTAATGA-AGAGAATGGGTTT
1 AAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGA-AGACTATGTTT
* * * * * ** * * * * * * *
3298912 TTGGTTCCCAATCTTGGAAGGAGTGGAGACTGTTATGAGAATTGATGCTTGTCTTATTTAA-AGG
65 ATAGTGCCTAATCCTAAAAAGAATGGAGATTG-TATGAGAATTCATGTTTATCTCATTTAAGA-G
* * * *
3298976 ATGAACTTTGA-TTTTAAGGAAAATAG--GCCAA
128 A-CAAATTTGATTTTTCA--AAAAT-GTTG-GAA
* * * *** ** * * * * * * *
3299007 AGAAAAG-ATTTCCATATAAAAGAAAATCGTCAATATCATTTATCCTAATGGGGAGAATGTGTTT
1 AAAAAAGCCTTT-CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTT
* * * * * * *
3299071 ATAGTGCCTAATCAC-AAAATGAGTGAAAATCAT-TACT-AGAATCCATGTTTGTCTCATTTTAG
65 ATAGTGCCTAATC-CTAAAAAGAATGGAGAT--TGTA-TGAGAATTCATGTTTATCTCATTTAAG
* * * * * * *
3299133 -GCACGAACTTAGACTTTACAAAAGTTGGTGG-G
126 AG-AC-AAATTTGATTTTTCAAAA-ATGTTGGAA
* * * * * *
3299165 AAAAAAGCCTTTCTTTG-AAAACTAAAGAATCAATATCACT-TATCATAATGAGAAGATTATATT
1 AAAAAAGCCTTTC-TTGCGAAACCAAAGCATCAATATCA-TGTATCCTAATGAGAAGACTATGTT
* * * * * * * *
3299228 TATGGTGACTAATCCTGAAAAGAACGGGGATTAGTAAGAGTATTCATGTTTGTCTTC-TTTAAGA
64 TATAGTGCCTAATCCTAAAAAGAATGGAGATT-GTATGAGAATTCATGTTTATC-TCATTTAAGA
*** * * *
3299292 GACAAACTTTGATTCCACCAAAAAAAGTGGGGA
127 GACAAA-TTTGATT-TTTC-AAAAATGTTGGAA
* * * * *
3299325 AAAAAAG-CTTTTTTGCGACACCAAAGCAT-AATGA-CATGCATCCTAA--AGAAGGAATGTGTT
1 AAAAAAGCCTTTCTTGCGAAACCAAAGCATCAAT-ATCATGTATCCTAATGAGAA-GACTATGTT
* * * * * * * * * * *
3299385 TTTGGTTCC-ATTCTTGAAAAA-AA-GAAGACTGTTACGAGAA-TCGATGCTTGTCTTATTTAAG
64 TATAGTGCCTAATCCT-AAAAAGAATGGAGATTG-TATGAGAATTC-ATGTTTATCTCATTTAAG
* * * *
3299446 GGATAAACTTTG-GTTTTAACAAAATAG--GGCAA
126 AGACAAA-TTTGATTTTTCA-AAAAT-GTTGG-AA
** * * ** * *
3299478 AAAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA-AGAGA--ATGCAT
1 AAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGA-AGACTATG--T
* * * * *
3299540 TTATAATGCCAAATCAC-AAAATA-AATGAAGATCAT-TACT-AGAATCCATGTTTGTCTCATTT
63 TTATAGTGCCTAATC-CTAAAA-AGAATGGAGAT--TGTA-TGAGAATTCATGTTTATCTCATTT
* * * * * *
3299601 GAGACACGAAGTTAGACTTTAT-AAAAATTGGTGG--
123 AAGAGAC-AAATTTGA-TTTTTCAAAAA-TGTTGGAA
* ** * * * *
3299635 GAAAAAGCCTTTCTTGTAAAACCAAAGCATCAACATCATGTATCCTAATGAGAAAACAATTTTTA
1 AAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTA
* * * * * * * * *
3299700 TGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATAAGTATTCATATTTGTCTTATTTAAAAGAT
66 TAGTGCCTAATCCTAAAAAGAATGGAGATT-GTATGAGAATTCATGTTTATCTCATTTAAGAGAC
* * **
3299765 AAACTGTGATTCTATCAAAAACATTGGAA
130 AAA-TTTGATT-TTTCAAAAATGTTGGAA
* * * * * * *
3299794 AGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAATGA-AAGGCATGTGTTT
1 AAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAC-TATGTTT
* * * * * * * * * *
3299858 TTGGTTTCC-AATCTTGAAAAGATTGGAGATTGTTATGAG-ATTCGATGTTTGTTTTATTTTAG-
65 ATAG-TGCCTAATCCTAAAAAGAATGGAGATTG-TATGAGAATTC-ATGTTTATCTCATTTAAGA
* * *** *
3299920 GGCTGAACTTTGATTTTAGGGAAAAT-ATGGTAA
127 GAC--AAATTTGATTTT-TCAAAAATGTTGG-AA
* ** * ** * * * * * * * *
3299953 AGAAAAGATTTTCATGC-AAATGAAAATCTTCAGTATGATTTATCCTAATGAGGAGAATGTGTTT
1 AAAAAAGCCTTTCTTGCGAAA-CCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTT
* * * * * ***
3300017 ATAATGCCTAATCAC-AAAATGATTGAAGACCTT-CACT-AGAA-TCTATGTTTGGGTCATTT--
65 ATAGTGCCTAATC-CTAAAAAGAATGGAGA--TTGTA-TGAGAATTC-ATGTTTATCTCATTTAA
* ** * * * *
3300076 GAGGCAAGAACTCAGACTTTACAAAAAT-TAGGGAC
125 GAGAC-A-AA-TTTGATTTTTCAAAAATGT-TGGAA
** * * * * ** * * *
3300111 AAGCAAGCCTTTCCTACAAAACCAAAGCCTCAATATTGTGTATTCTTATGAAAAGACTATGTTTA
1 AAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTA
* ** * ** * * * *
3300176 TGGTTACTAATCCTGAAAAGAATAGG-GATTAGTATGACTATTTATGTTTGTCTTATTTAAGGGA
66 TAGTGCCTAATCCTAAAAAGAAT-GGAGATT-GTATGAGAATTCATGTTTATCTCATTTAAGAGA
* * *
3300240 CAAACTTTCATTCTATCAAAAATGGTGGAA
129 CAAA-TTTGATT-TTTCAAAAATGTTGGAA
* * * * * * * *
3300270 ACAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTTTCCTATTGA-AAGGAATGTGCTT
1 AAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAA-GACTATG-TT
* * * * * * * * * *
3300334 T-TGGTTCCCAATCTTGAAAAGATTGGAGATTGTTATGAG-ATTCGATGTTTGTCTTATTTTAGG
64 TATAGTGCCTAATCCTAAAAAGAATGGAGATTG-TATGAGAATTC-ATGTTTATCTCATTTAAGA
* * * ***
3300397 GCCGAACTTCGATTTTAGGGAAAATAG--GGCAA
127 GAC-AAATTTGATTTT-TCAAAAAT-GTTGG-AA
** ** * ** * * * * * * * *
3300429 CGAAAAGATTTTCATGC-AAATGAAAATCTTCAGTATTATTTATCCTAATGAGGAGAATGTGTTT
1 AAAAAAGCCTTTCTTGCGAAA-CCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTT
* * * ** * * * *
3300493 ATAATGCCTAATCAC-AAAATGAATGAAGATCACTACT-AGAATTTATATTTGTCTCATTTGAG-
65 ATAGTGCCTAATC-CTAAAAAGAATGGAGAT-TGTA-TGAGAATTCATGTTTATCTCATTTAAGA
* *
3300555 GCACAAACTTG-------------G-T-GAG
127 G-ACAAATTTGATTTTTCAAAAATGTTGGAA
* * * * *
3300571 AAAAAAGCCTTTCTTGCTAAACCAAACCATTAATATCATGTATTCTAATGAGAAGACTATGCTTA
1 AAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTA
* * * * * * * *
3300636 TGGTGCCTAATCCTAAAAGGAATGGGGATTTGTATGAGTATTCTTGTTTGTCTAATTTAATAGAC
66 TAGTGCCTAATCCTAAAAAGAATGGAGA-TTGTATGAGAATTCATGTTTATCTCATTTAAGAGAC
* *
3300701 AAACTTTGATTATTTCAAAAAAGCT--AA
130 AAA-TTTGATT-TTTCAAAAATGTTGGAA
* * * * ** * * *
3300728 AAGAAAAGCTTTTCTTGCGACACGAAAGCATCAATGTCATGTATTTTAATGA-AGGGAATGTGCT
1 AA-AAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGA-AGACTATG--
* * * * * * * *
3300792 TTTCTGGTTCCCAATCAC-AAAAA-AATGGAGACTGTTATGAGAA-TCAATGCTTGTCTAATTTA
62 TTTATAGTGCCTAATC-CTAAAAAGAATGGAGATTG-TATGAGAATTC-ATGTTTATCTCATTTA
* ** * * **
3300854 AGGGTTGAACTTTGA-TTTTAAGGAAAAT-AAGGCAA
124 AGAG-ACAAATTTGATTTTTCA--AAAATGTTGG-AA
** ** * * * ** * * * *
3300889 GGAAAAGATTTTCATCCAAAAGAAAACCATCAATATCATTTATCCTAATGA-AGAGAATTGTGTT
1 AAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGA-AG-ACTATGTT
* * * * *
3300953 TATAGTGCCTAATCAC-AAAATGAATGAAGATCAT-TACT-AGAATTTATGTTTGTCTCATTTGA
64 TATAGTGCCTAATC-CTAAAAAGAATGGAGAT--TGTA-TGAGAATTCATGTTTATCTCATTTAA
** * * * * * *
3301015 GCCATAAACTTAGACTTTAC-AATATTTAATGG--
125 GAGACAAA-TTTGATTTTTCAAAAATGT--TGGAA
* * * * * * *
3301047 GAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATTATGTACCCTAATGAGAATACAATGTTTG
1 AAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTA
* * * * * * *
3301112 TGGTGCCTAATCCTAAAAGGAATGGGGATTTGTATGA-ATTTTCATGATTGTCTTATTTAAGAGA
66 TAGTGCCTAATCCTAAAAAGAATGGAGA-TTGTATGAGA-ATTCATGTTTATCTCATTTAAGAGA
* * *
3301176 CAAACTTTGATTCTATCAAAAATATTAGAA
129 CAAA-TTTGATT-TTTCAAAAATGTTGGAA
* * * ** * * * * *
3301206 AGAAAAGCTTTTCCTATGACACCAAAGCATCACTATCATGTACCCAAATGAAGCAA-A-TGTGTT
1 AAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG-AG-AAGACTATGTT
* * * * * * ** * * * *
3301269 TTTAGTTCCCAATCTTTAAAAA-ACTAGAGATTGTTACAAGAA-TCGATGCTTGTTTTATTTAAG
64 TATAGTGCCTAATC-CTAAAAAGAATGGAGATTG-TATGAGAATTC-ATGTTTATCTCATTTAAG
* * * ** * *
3301332 GGATGAACTTTGATTTTAAAGAAAATAGGT-CAA
126 AGA-CAAATTTGATTTTTCA-AAAAT-GTTGGAA
** * * ** * * * * * *
3301365 GGAAAAG-ATTTCTTTGCAAAAGAAAATCATCCATATTA-GTTATCCTAATGAGGAGAATGTGTT
1 AAAAAAGCCTTTC-TTGCGAAACCAAAGCATCAATATCATG-TATCCTAATGAGAAGACTATGTT
* * * * ** * * *
3301428 TATAGTGCCTAATGAC-AAAATGAATGAAGATTATTACAAGAATTTATGTATGTCTCATTT--GA
64 TATAGTGCCTAAT-CCTAAAAAGAATGGAGATT-GTATGAGAATTCATGTTTATCTCATTTAAGA
* * * * * *
3301490 GGCATGAACTTAGACTTTACAAAAATTGGTGGGA
127 GACA--AA-TTTGATTTTTCAAAAA-TGTTGGAA
* * *
3301524 AAAAAA-CGTTTCTTGCTAAACCAAAGCATCAATATCATGTATCCTATTGAGAAGA-T-TGCATT
1 AAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATG--TT
* * * * * ** *
3301586 TATGGT-CCTTAATCCTAAAAAGAATGGGGATTTGTATGAGTATTCATGATTGTCTTGTTTAAAA
64 TATAGTGCC-TAATCCTAAAAAGAATGGAGA-TTGTATGAGAATTCATGTTTATCTCATTTAAGA
* *
3301650 GACAAACTTTGATTCTATCAAAAAAGTT--AA
127 GACAAA-TTTGATT-TTTCAAAAATGTTGGAA
* * * * * * * *
3301680 AAGAAAAGCTTTTCTTGCGACACCAAAGCGTCAATCTTATGTAT-CTAATGA-AGGCAATGTGTT
1 AA-AAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAG-ACTATG--
* * * * * * * * * * * *
3301743 TTTTTGGTTCCCAGTCTTGAAAAGAATAGAGACTGTTATGAGAA-TCGATGCTTGTCTAATTTAA
62 TTTATAGTGCCTAATCCTAAAAAGAATGGAGATTG-TATGAGAATTC-ATGTTTATCTCATTTAA
* * * * **
3301807 GGGATGAACTTTGA-TTTTAAGGAAAAT-AAGGCAA
125 GAGA-CAAATTTGATTTTTCA--AAAATGTTGG-AA
** * ** * ** * * * * * *
3301841 TGAAAAG-ATTTCCACGCAAAAAAAAATCATTAAATATCATTTATCCTAATGAGGAGAATGTGTT
1 AAAAAAGCCTTT-CTTGCGAAACCAAAGCA-TCAATATCATGTATCCTAATGAGAAGACTATGTT
* * * * * *
3301905 TATAATGCCTAATCAC-AAAATGAATGAAGATCAT-TACT-AGAATTTATGTTTGTCTCATTTGA
64 TATAGTGCCTAATC-CTAAAAAGAATGGAGAT--TGTA-TGAGAATTCATGTTTATCTCATTTAA
** * * * * *
3301967 GCCACAAACTTAGACTTTAC-AATAT-TTAGTG-G
125 GAGACAAA-TTTGATTTTTCAAAAATGTT-G-GAA
* * * *
3301999 GAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCTTAATGAGAATACAATGTTTA
1 AAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTA
* * * * *
3302064 TGGTGCCTAATCCTAAAAAGAA-GAGGGATTTCTTTGA-ATATTCATGTTTGTCTCATTTAAGAG
66 TAGTGCCTAATCCTAAAAAGAATG-GAGA-TTGTATGAGA-ATTCATGTTTATCTCATTTAAGAG
* * *
3302127 AAAAACTTTGATTGTATCAAAAATGTTAGAA
128 ACAAA-TTTGATT-TTTCAAAAATGTTGGAA
* * * * *
3302158 AGAAAAGCTTTTCTTGC-AACACCAAAGCATCAATTTCATGTATCTTAATGAAGGAA-A-TGTGT
1 AAAAAAGCCTTTCTTGCGAA-ACCAAAGCATCAATATCATGTATCCTAATG-A-GAAGACTATGT
* * * * * * * * * ** * *
3302220 TTTTGGTTCCCAATCTTTAAAAGACTGGAGACTGTTATGAGAA-TCGATGCTTGCCTTACTTAAG
63 TTATAGTGCCTAATCCTAAAAAGAATGGAGATTG-TATGAGAATTC-ATGTTTATCTCATTTAAG
* * * **
3302284 GGATGAACTTTGATTTTAAGAAAAATAG--GGCAA
126 AGA-CAAATTTGATTTT-TCAAAAAT-GTTGG-AA
** ** * ** * * * * * *
3302317 GGAAAA-TATTTCTATGCAAAAGAAAATCATCAATATC-GGTTGTCCTAATGAGGAGAATGTGTT
1 AAAAAAGCCTTTCT-TGCGAAACCAAAGCATCAATATCATG-TATCCTAATGAGAAGACTATGTT
* * * ** * * *
3302380 TATAGTGCCTGAT-GTCAAAATGAAT-GAGGA-T-TACAAGAATTTATGTTTATCTTATTTGAG-
64 TATAGTGCCTAATCCT-AAAAAGAATGGA-GATTGTATGAGAATTCATGTTTATCTCATTTAAGA
* ** * * * *
3302440 GCACGAACTTAAACTTTACAAAAATTGGTGG-G
127 G-AC-AAATTTGATTTTTCAAAAA-TGTTGGAA
* * * *
3302472 AAAAAAGCCTTTCTTGCTAAACCAAAGCATCAGTATCATGTATCCTATTGGGAAGACTATGTTTA
1 AAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTA
* * * * * * * *
3302537 TAGTCCCTAATCCTAAAAGGAATGGGGATTTGTCTGAGTATTCTTGTTTGTCTCATTTAGGAGAC
66 TAGTGCCTAATCCTAAAAAGAATGGAGA-TTGTATGAGAATTCATGTTTATCTCATTTAAGAGAC
*
3302602 AAACTTTGATTTTGTCAAAAAAGTT--AA
130 AAA-TTTGATTTT-TCAAAAATGTTGGAA
* *
3302629 AAGAAAAGCTTTTCTTGCGACACCAAAGCATCA
1 AA-AAAAGCCTTTCTTGCGAAACCAAAGCATCA
3302662 TCGTCATGTG
Statistics
Matches: 3318, Mismatches: 1073, Indels: 735
0.65 0.21 0.14
Matches are distributed among these distances:
141 2 0.00
142 90 0.03
143 10 0.00
150 1 0.00
151 11 0.00
152 54 0.02
153 23 0.01
154 51 0.02
155 119 0.04
156 150 0.05
157 396 0.12
158 839 0.25
159 1159 0.35
160 352 0.11
161 45 0.01
162 15 0.00
163 1 0.00
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.33
Consensus pattern (156 bp):
AAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTA
TAGTGCCTAATCCTAAAAAGAATGGAGATTGTATGAGAATTCATGTTTATCTCATTTAAGAGACA
AATTTGATTTTTCAAAAATGTTGGAA
Found at i:3300371 original size:476 final size:472
Alignment explanation
Indices: 3297501--3303019 Score: 6048
Period size: 476 Copynumber: 11.7 Consensus size: 472
3297491 GGTGTTTACA
* * ** * **
3297501 CCAATTTTGAAAGGAATGGAGACAATTACGAGAATC-AGTGCTTGTCTTATTTAAAAGATGAACT
1 CCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGA-TGCTTGTCTTATTTAAGGGATGAACT
* *
3297565 TTGATTTTAAGGAAAAGAGGGCAAAGAAAAGATTTCCATGCAAAA-AAAATCATT-AATATCATT
65 TTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATC-TTCAATATCATT
* * * * * *
3297628 TATCCTAAGGAGTAGAATGTGTTTATAGTGCGTAATCACAGAATGAATAAAGATCATTACTGGAA
129 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAA
* * * * *
3297693 TTTATATTTATCTCATTTGAGGCACGAACTTAGA-TTATACCAAAATTGGTTGGAAAAAAGCCTT
194 TTTATGTTTGTCTCATTTGAGGCA-AAACTTAGACTT-TACAAAAATT-GTGGGAAAAAAGCCTT
* * * * *
3297757 TCTTGCGAAATCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTGTAGTGCCTAAT
256 TCTTGCAAAACCAAAGCATCAATATCATGTAT-CTTATGAGAAGACTATGTTTATGGTGCCTAAT
** * *
3297822 CCTAAAAAGAATGGGGA--TGTATGAAAATTCATGTTTATCTCATTTAAGAGACAAA-TATTGAT
320 CCTAAAAAGAATGGGGATTTGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACT-TTGAT
* * * *
3297884 TTTGTTAAAAATGTTGGAAAGAAAAACTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT
384 TCTATCAAAAATGTTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT
*
3297949 AATGAAGAGAATG-GCTTTTGGTTC
449 AATGAAG-GAATGTGTTTTTGGTTC
* * * * *
3297973 CCAATCTTGAAAAGATTGGAGACTGTTACGAGAATCGATGCTCGTCTTATTTATGGTG-TGCACT
1 CCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTGTCTTATTTAAGG-GATGAACT
* * * *
3298037 TTGATTTTAA-GAAAATAGGGCAAAGAAAATACTTTT-ATGCGAAAGAAAAATCATCAGTATCAT
65 TTGATTTTAAGGAAAATAGGGCAAAGAAAAGA-TTTTCATGCAAAAG-AAAATCTTCAATATCAT
* * * * *
3298100 TGATCATAATGAGAAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAAATCACTACTAGA
128 TTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGA
* *
3298165 ATTTATGTTTATCTTATTTGAGGCATAAACTTAGACTTTACAAAAATTTGTGGGAAAAAAGCCTT
193 ATTTATGTTTGTCTCATTTGAGGCA-AAACTTAGACTTTACAAAAA-TTGTGGGAAAAAAGCCTT
** * **
3298230 TCTTGTGAAATCAAAGCATCAATATCATGTATCTTAGTGAGAAGACTATGTTTATCATGCCTAAT
256 TCTTGCAAAACCAAAGCATCAATATCATGTATCTTA-TGAGAAGACTATGTTTATGGTGCCTAAT
* *
3298295 CCTAAAAAGAAAGGGGATTTGTATGAGTATTCATGTTTGTCTCATTTAAGAGACAAACTTTGATT
320 CCTAAAAAGAATGGGGATTTGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
* * * * * *
3298360 TTGTCAAAAACGTTGGAAAAAAAAGCTTTTTTTTGTGACACCAAAGCATCAATGTCATGTATCCT
385 CTATCAAAAATGTTGGAAAGAAAAGC-TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT
* *
3298425 AATGTAGAGAATGGGTTTTTGGTTC
449 AATGAAG-GAATGTGTTTTTGGTTC
* * * * * * * *
3298450 CCACTATTGAAAGGAATAGAGACTGTTATGAGAATTGGTGCTTGTCTTATTTAAAGGATGAATTT
1 CCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTT
* * * * * * * * * *
3298515 TGATTTTATGGAAAATATGACAAAGAAAAGACTTCCAAGTAGAAG-AAATTTGTCAAAATCATTT
66 TGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCT-TCAATATCATTT
* * * * * * *
3298579 ATCC-ATTTAAGGAGAATGTGTTTATAGAGCCTAAACACAAAATAAATG-A-AT-A--ACAATAA
130 ATCCTA-ATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAA
** * * *
3298638 TCCATATTTGTCTTATTTGAGGCACAAACTTAGACTTTTCAAAAATT-TAAGGG-AAAAAG-CTT
194 TTTATGTTTGTCTCATTTGAGGCA-AAACTTAGACTTTACAAAAATTGT--GGGAAAAAAGCCTT
* ** * * *
3298700 TTTTGTTGAAACCAAAGCATCAATATCATGTATCCTTTTGAGAAGACTATGTTTATAGTGCCTAG
256 TCTTG-CAAAACCAAAGCATCAATATCATGTAT-CTTATGAGAAGACTATGTTTATGGTGCCTAA
* * * * * * * * *
3298765 TCCTGAAAAGAATGTGGATTTGT-TGACTATTCAGGCTTATCTTATTTATG-GCCTAAACTTTGG
319 TCCTAAAAAGAATGGGGATTTGTATGAGTATTCATGTTTGTCTTATTTAAGAGAC-AAACTTTGA
* * * * *
3298828 TTCTA-CTAAAAACGTTGGAAAGAAAAGATTTTTTTGCGACGCTAAAGCATCAATGTCATGTATC
383 TTCTATC-AAAAATGTTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
*
3298892 CTAATGAAGAGAATGGGTTTTTGGTTC
447 CTAATGAAG-GAATGTGTTTTTGGTTC
* * * * *
3298919 CCAATCTTGGAAGGAGTGGAGACTGTTATGAGAATTGATGCTTGTCTTATTTAAAGGATGAACTT
1 CCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTT
* * ** *
3298984 TGATTTTAAGGAAAATAGGCCAAAGAAAAGATTTCCATATAAAAGAAAATCGTCAATATCATTTA
66 TGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCTTCAATATCATTTA
* * * *
3299049 TCCTAATGGGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAGTGAAAATCATTACTAGAATC
131 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATT
* * * *
3299114 CATGTTTGTCTCATTTTAGGCACGAACTTAGACTTTACAAAAGTTGGTGGGAAAAAAGCCTTTCT
196 TATGTTTGTCTCATTTGAGGCA-AAACTTAGACTTTACAAAAATT-GTGGGAAAAAAGCCTTTC-
* * * * * *
3299179 TTG-AAAACTAAAGAATCAATATCACT-TATCATAATGAGAAGATTATATTTATGGTGACTAATC
258 TTGCAAAACCAAAGCATCAATATCA-TGTATC-TTATGAGAAGACTATGTTTATGGTGCCTAATC
* * * * *
3299242 CTGAAAAGAACGGGGATTAGTAAGAGTATTCATGTTTGTCTTCTTTAAGAGACAAACTTTGATTC
321 CTAAAAAGAATGGGGATTTGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
* * * * * *
3299307 CACCAAAAAAAGTGGGGAAA-AAAAGCTTTT-TTGCGACACCAAAGCAT-AATGACATGCATCCT
386 TATC-AAAAATGT-TGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT
*
3299369 AAAGAAGGAATGTGTTTTTGGTT-
449 AATGAAGGAATGTGTTTTTGGTTC
* * * * *
3299392 CCATTCTTGAAAA-AAAGAAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATAAACTT
1 CCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTT
* * * *
3299456 TGGTTTTAA-CAAAATAGGGCAAAAAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTA
66 TGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCTTCAATATCATTTA
* ** * * * *
3299520 TCCTAATGAAGAGAATGCATTTATAATGCCAAATCACAAAATAAATGAAGATCATTACTAGAATC
131 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATT
* * * * *
3299585 CATGTTTGTCTCATTTGAGACACGAAGTTAGACTTTATAAAAATTGGTGGG-AAAAAGCCTTTCT
196 TATGTTTGTCTCATTTGAGGCA-AAACTTAGACTTTACAAAAATT-GTGGGAAAAAAGCCTTTCT
* * * * * *
3299649 TGTAAAACCAAAGCATCAACATCATGTATCCTAATGAGAAAACAATTTTTATGGTGCCTAATCCT
259 TGCAAAACCAAAGCATCAATATCATGTAT-CTTATGAGAAGACTATGTTTATGGTGCCTAATCCT
* * * * * *
3299714 AAAAAGAATGGGGATTAGTATAAGTATTCATATTTGTCTTATTTAAAAGATAAACTGTGATTCTA
323 AAAAAGAATGGGGATTTGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
** *
3299779 TCAAAAACATTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAATG
388 TCAAAAATGTTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATG
* *
3299844 AAAGGCATGTGTTTTTGGTTT
453 -AAGGAATGTGTTTTTGGTTC
* * * * * * *
3299865 CCAATCTTGAAAAGATTGGAGATTGTTATGAGATTCGATGTTTGTTTTATTTTAGGGCTGAACTT
1 CCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTT
* * * * * *
3299930 TGATTTTAGGGAAAATATGGTAAAGAAAAGATTTTCATGCAAATGAAAATCTTCAGTATGATTTA
66 TGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCTTCAATATCATTTA
* * *
3299995 TCCTAATGAGGAGAATGTGTTTATAATGCCTAATCACAAAATGATTGAAGA-CCTTCACTAGAAT
131 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATT-ACTAGAAT
* ** * * *
3300059 CTATGTTTGGGTCATTTGAGGCAAGAACTCAGACTTTACAAAAATT-AGGGACAAGCAAGCCTTT
195 TTATGTTTGTCTCATTTGAGGCAA-AACTTAGACTTTACAAAAATTGTGGGA-AA-AAAGCCTTT
* * * ** * **
3300123 CCTACAAAACCAAAGCCTCAATATTGTGTATTCTTATGAAAAGACTATGTTTATGGTTACTAATC
257 CTTGCAAAACCAAAGCATCAATATCATGTA-TCTTATGAGAAGACTATGTTTATGGTGCCTAATC
* * * * * * *
3300188 CTGAAAAGAATAGGGATTAGTATGACTATTTATGTTTGTCTTATTTAAGGGACAAACTTTCATTC
321 CTAAAAAGAATGGGGATTTGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
* * * *
3300253 TATCAAAAATGGTGGAAACAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTTTCCTAT
386 TATCAAAAATGTTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAA
*
3300318 TGAAAGGAATGTGCTTTTGGTTC
451 TG-AAGGAATGTGTTTTTGGTTC
* * * * * **
3300341 CCAATCTTGAAAAGATTGGAGATTGTTATGAGATTCGATGTTTGTCTTATTTTAGGGCCGAACTT
1 CCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTT
* * * * * *
3300406 CGATTTTAGGGAAAATAGGGCAACGAAAAGATTTTCATGCAAATGAAAATCTTCAGTATTATTTA
66 TGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCTTCAATATCATTTA
* *
3300471 TCCTAATGAGGAGAATGTGTTTATAATGCCTAATCACAAAATGAATGAAGATCACTACTAGAATT
131 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATT
* *
3300536 TATATTTGTCTCATTTGAGGC---AC--A-A----AC-----TTGGTGAGAAAAAAGCCTTTCTT
196 TATGTTTGTCTCATTTGAGGCAAAACTTAGACTTTACAAAAATT-GTGGGAAAAAAGCCTTTCTT
* * * * *
3300586 GCTAAACCAAACCATTAATATCATGTATTCTAATGAGAAGACTATGCTTATGGTGCCTAATCCTA
260 GCAAAACCAAAGCATCAATATCATGTA-TCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTA
* * * * * *
3300651 AAAGGAATGGGGATTTGTATGAGTATTCTTGTTTGTCTAATTTAATAGACAAACTTTGATTATTT
324 AAAAGAATGGGGATTTGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * * * **
3300716 CAAAAAAGCT-AAAAGAAAAGCTTTTCTTGCGACACGAAAGCATCAATGTCATGTATTTTAATGA
389 CAAAAATGTTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGA
3300780 AGGGAATGTGCTTTTCTGGTTC
454 A-GGAATGTG-TTTT-TGGTTC
** * * * *
3300802 CCAATC-ACAAAAAAATGGAGACTGTTATGAGAATCAATGCTTGTCTAATTTAAGGGTTGAACTT
1 CCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTT
* * * * *
3300866 TGATTTTAAGGAAAATAAGGCAAGGAAAAGATTTTCATCCAAAAGAAAACCATCAATATCATTTA
66 TGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCTTCAATATCATTTA
*
3300931 TCCTAATGAAGAGAATTGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
131 TCCTAATGAGGAGAA-TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* * * *
3300996 TTATGTTTGTCTCATTTGAGCCATAAACTTAGACTTTACAATATTTAATGGG-AAAAAGCCTTTC
195 TTATGTTTGTCTCATTTGAGGCA-AAACTTAGACTTTACAAAAATT-GTGGGAAAAAAGCCTTTC
* * * * * *
3301060 TTGCAAAACCAAAGCATCAATATTATGTACCCTAATGAGAATACAATGTTTGTGGTGCCTAATCC
258 TTGCAAAACCAAAGCATCAATATCATGTA-TCTTATGAGAAGACTATGTTTATGGTGCCTAATCC
* * * *
3301125 TAAAAGGAATGGGGATTTGTATGAATTTTCATGATTGTCTTATTTAAGAGACAAACTTTGATTCT
322 TAAAAAGAATGGGGATTTGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
* * * ** * * * *
3301190 ATCAAAAATATTAGAAAGAAAAGCTTTTCCTATGACACCAAAGCATCACTATCATGTACCCAAAT
387 ATCAAAAATGTTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT
* *
3301255 GAAGCAAATGTGTTTTTAGTTC
452 GAAG-GAATGTGTTTTTGGTTC
* * * ** *
3301277 CCAATCTTTAAAA-AACTAGAGATTGTTACAAGAATCGATGCTTGTTTTATTTAAGGGATGAACT
1 CCAATCTTGAAAAGAA-TGGAGACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACT
* * * * * * * *
3301341 TTGATTTTAAAGAAAATAGGTCAAGGAAAAGA-TTTCTTTGCAAAAGAAAATCATCCATATTAGT
65 TTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTC-ATGCAAAAGAAAATCTTCAATATCATT
* * *
3301405 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATGACAAAATGAATGAAGATTATTACAAGAA
129 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAA
* * * *
3301470 TTTATGTATGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAACGTTT
194 TTTATGTTTGTCTCATTTGAGGCA-AAACTTAGACTTTACAAAAATT-GTGGGAAAAAAGCCTTT
* *
3301535 CTTGCTAAACCAAAGCATCAATATCATGTATCCTATTGAGAAGA-T-TGCATTTATGGT-CCTTA
257 CTTGCAAAACCAAAGCATCAATATCATGTATCTTA-TGAGAAGACTATG--TTTATGGTGCC-TA
* * *
3301597 ATCCTAAAAAGAATGGGGATTTGTATGAGTATTCATGATTGTCTTGTTTAAAAGACAAACTTTGA
318 ATCCTAAAAAGAATGGGGATTTGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* * * * *
3301662 TTCTATCAAAAAAGTT-AAAAGAAAAGCTTTTCTTGCGACACCAAAGCGTCAATCTTATGTAT-C
383 TTCTATCAAAAATGTTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCC
3301725 TAATGAAGGCAATGTGTTTTTTTGGTTC
448 TAATGAAGG-AATGTG--TTTTTGGTTC
* * *
3301753 CCAGTCTTGAAAAGAATAGAGACTGTTATGAGAATCGATGCTTGTCTAATTTAAGGGATGAACTT
1 CCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTT
* * * * * *
3301818 TGATTTTAAGGAAAATAAGGCAATGAAAAGATTTCCACGCAAAAAAAAATCATTAAATATCATTT
66 TGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATC-TTCAATATCATTT
*
3301883 ATCCTAATGAGGAGAATGTGTTTATAATGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
130 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* * *
3301948 TTATGTTTGTCTCATTTGAGCCACAAACTTAGACTTTACAATATTTAGTGGG-AAAAAGCCTTTC
195 TTATGTTTGTCTCATTTGAGGCA-AAACTTAGACTTTACAAAAATT-GTGGGAAAAAAGCCTTTC
* * *
3302012 TTGCGAAACCAAAGCATCAATATCATGTATCTTAATGAGAATACAATGTTTATGGTGCCTAATCC
258 TTGCAAAACCAAAGCATCAATATCATGTATCTT-ATGAGAAGACTATGTTTATGGTGCCTAATCC
* * * * * *
3302077 TAAAAAGAA-GAGGGATTTCTTTGAATATTCATGTTTGTCTCATTTAAGAGAAAAACTTTGATTG
322 TAAAAAGAATG-GGGATTTGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
* * * *
3302141 TATCAAAAATGTTAGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATTTCATGTATCTTAA
386 TATCAAAAATGTTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAA
3302206 TGAAGGAAATGTGTTTTTGGTTC
451 TGAAGG-AATGTGTTTTTGGTTC
* * * *
3302229 CCAATCTTTAAAAGACTGGAGACTGTTATGAGAATCGATGCTTGCCTTACTTAAGGGATGAACTT
1 CCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTT
* * * * **
3302294 TGATTTTAAGAAAAATAGGGCAAGGAAAATA-TTTCTATGCAAAAGAAAATCATCAATATCGGTT
66 TGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTC-ATGCAAAAGAAAATCTTCAATATCATTT
* * ** * *
3302358 GTCCTAATGAGGAGAATGTGTTTATAGTGCCTGATGTCAAAATGAATG-AG--GATTACAAGAAT
130 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* * * *
3302420 TTATGTTTATCTTATTTGAGGCACGAACTTAAACTTTACAAAAATTGGTGGGAAAAAAGCCTTTC
195 TTATGTTTGTCTCATTTGAGGCA-AAACTTAGACTTTACAAAAATT-GTGGGAAAAAAGCCTTTC
* * * * * *
3302485 TTGCTAAACCAAAGCATCAGTATCATGTATCCTATTGGGAAGACTATGTTTATAGTCCCTAATCC
258 TTGCAAAACCAAAGCATCAATATCATGTATCTTA-TGAGAAGACTATGTTTATGGTGCCTAATCC
* * * * * *
3302550 TAAAAGGAATGGGGATTTGTCTGAGTATTCTTGTTTGTCTCATTTAGGAGACAAACTTTGATTTT
322 TAAAAAGAATGGGGATTTGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
* * * * *
3302615 GTCAAAAAAGTT-AAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC-ATCGTCATGTGTTCTAA
387 ATCAAAAATGTTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAAT-GTCATGTATCCTAA
*
3302678 TTAAGGGAATGTGTTTTTTTGGTTC
451 TGAA-GGAATGTG--TTTTTGGTTC
** * * * * *
3302703 CCAATCAAGAAAAGAATGGAGACTATTATGAGAATTGATGCTTATCTAATTTAAGGGATGAAATT
1 CCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTT
* * * *
3302768 TGATTATAAGGAAAATAGGGTAAGGAAAAGATTTTCATGCAAAA-AAAATCATCAATATCATTTA
66 TGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCTTCAATATCATTTA
3302832 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATT
131 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATT
* * *
3302897 TATGTTTGTCTCATTTGAGCCACAAACTTAGACTTTACAATATTTAGTGGG-AAAAAGCCTTTCT
196 TATGTTTGTCTCATTTGAGGCA-AAACTTAGACTTTACAAAAATT-GTGGGAAAAAAGCCTTTCT
** * * * * *
3302961 TGTGAAACTAAAGCATCAATATCATGTATCCTAATCAGAATACAATGTTTATGGTGCCT
259 TGCAAAACCAAAGCATCAATATCATGTAT-CTTATGAGAAGACTATGTTTATGGTGCCT
3303020 GTAGACACCT
Statistics
Matches: 4282, Mismatches: 647, Indels: 233
0.83 0.13 0.05
Matches are distributed among these distances:
458 2 0.00
459 54 0.01
460 243 0.06
461 81 0.02
462 3 0.00
465 4 0.00
467 1 0.00
468 6 0.00
469 229 0.05
470 201 0.05
471 274 0.06
472 298 0.07
473 415 0.10
474 240 0.06
475 559 0.13
476 1266 0.30
477 361 0.08
478 45 0.01
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.33
Consensus pattern (472 bp):
CCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTT
TGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCTTCAATATCATTTA
TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATT
TATGTTTGTCTCATTTGAGGCAAAACTTAGACTTTACAAAAATTGTGGGAAAAAAGCCTTTCTTG
CAAAACCAAAGCATCAATATCATGTATCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAA
AAGAATGGGGATTTGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
AAAATGTTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAG
GAATGTGTTTTTGGTTC
Found at i:3303385 original size:17 final size:18
Alignment explanation
Indices: 3303345--3303390 Score: 67
Period size: 19 Copynumber: 2.6 Consensus size: 18
3303335 ATTCAGTAAA
3303345 TGTATCGATACATAAGTTT
1 TGTATCGATACATAAG-TT
*
3303364 TGTATCGATACATCAG-T
1 TGTATCGATACATAAGTT
3303381 TGTATCGATA
1 TGTATCGATA
3303391 TAATGTATTG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
17 11 0.42
19 15 0.58
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.39
Consensus pattern (18 bp):
TGTATCGATACATAAGTT
Found at i:3303463 original size:13 final size:13
Alignment explanation
Indices: 3303445--3303470 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3303435 ATTAAGAAAA
3303445 TGTATCGATACAT
1 TGTATCGATACAT
3303458 TGTATCGATACAT
1 TGTATCGATACAT
3303471 CGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3303482 original size:20 final size:20
Alignment explanation
Indices: 3303457--3303511 Score: 110
Period size: 20 Copynumber: 2.8 Consensus size: 20
3303447 TATCGATACA
3303457 TTGTATCGATACATCGATCT
1 TTGTATCGATACATCGATCT
3303477 TTGTATCGATACATCGATCT
1 TTGTATCGATACATCGATCT
3303497 TTGTATCGATACATC
1 TTGTATCGATACATC
3303512 TAGGAAGTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.25, C:0.20, G:0.15, T:0.40
Consensus pattern (20 bp):
TTGTATCGATACATCGATCT
Found at i:3305919 original size:52 final size:52
Alignment explanation
Indices: 3305846--3305982 Score: 159
Period size: 52 Copynumber: 2.6 Consensus size: 52
3305836 TTAAGTTTCT
* * * *
3305846 CAATTTTTCATAATCGAGGATACTCCAACCCCGGTTTTATTTTC-AAAACAC
1 CAATTTTCCATAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAAACAC
* * *
3305897 CAATTTTCCTTTAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAATAC
1 CAATTTTCC-ATAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAAACAC
* * * *
3305950 TAATTTTTCACAATTGGGGATACTCCAACCCCG
1 CAATTTTCCATAATCGGGGATACTCCAACCCCG
3305983 TTATTTTTGA
Statistics
Matches: 71, Mismatches: 13, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
51 8 0.11
52 50 0.70
53 13 0.18
ACGTcount: A:0.30, C:0.26, G:0.11, T:0.34
Consensus pattern (52 bp):
CAATTTTCCATAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAAACAC
Found at i:3306028 original size:80 final size:80
Alignment explanation
Indices: 3305913--3306248 Score: 378
Period size: 79 Copynumber: 4.2 Consensus size: 80
3305903 TCCTTTAATC
* * * *
3305913 GGGGATACTCCAACTCCGATTTTATTTCCAAAAATACTAATTTTTCACAATTGGGGATACTCCAA
1 GGGGATACTCCAACCCCGACTTTATTTCCTAAAATACTAATTTTTCACAATCGGGGATACTCCAA
**
3305978 CCCCGTTATTTTTGA
66 CCCCGTTATTTCCGA
* * * * * * * *
3305993 GGAGATACTCAAACCCCCGACTTTA-TTCCTAAAATATTGATTTCTCATAATCAGGGATGCTCCA
1 GGGGATACTCCAA-CCCCGACTTTATTTCCTAAAATACTAATTTTTCACAATCGGGGATACTCCA
* *
3306057 ACCCCATTATTTCTGA
65 ACCCCGTTATTTCCGA
* * *
3306073 GGGGATACTCCAACCCTGGCTTTATTT-CTAAAATACTAATTTCTT-ATAATCGGGGATACTCCA
1 GGGGATACTCCAACCCCGACTTTATTTCCTAAAATACTAATTT-TTCACAATCGGGGATACTCCA
*
3306136 ACCCCGTTATCTCCGA
65 ACCCCGTTATTTCCGA
*
3306152 GGGGATACTCCAACCCCGATTTTATTTCC--AAAT-CATCAATTTTTCACAATCGGGGATACTCC
1 GGGGATACTCCAACCCCGACTTTATTTCCTAAAATAC-T-AATTTTTCACAATCGGGGATACTCC
* * *
3306214 AACCCTGTTATTTTCAA
64 AACCCCGTTATTTCCGA
3306231 GGGGATACTCCAACCCCG
1 GGGGATACTCCAACCCCG
3306249 TTACTATCTC
Statistics
Matches: 215, Mismatches: 34, Indels: 15
0.81 0.13 0.06
Matches are distributed among these distances:
77 1 0.00
78 7 0.03
79 127 0.59
80 71 0.33
81 9 0.04
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (80 bp):
GGGGATACTCCAACCCCGACTTTATTTCCTAAAATACTAATTTTTCACAATCGGGGATACTCCAA
CCCCGTTATTTCCGA
Found at i:3306134 original size:159 final size:158
Alignment explanation
Indices: 3305913--3306246 Score: 390
Period size: 159 Copynumber: 2.1 Consensus size: 158
3305903 TCCTTTAATC
* *
3305913 GGGGATACTCCAACTCCGATTTTATTTCCAAAAATACTAATTTTTCACAATTGGGGATACTCCAA
1 GGGGATACTCCAAC-CCGACTTTATTTCCAAAAATACTAATTTTTCACAATCGGGGATACTCCAA
* ** ** *
3305978 CCCCGTTATTTTTGAGGAGATACTCAAACCCCCGACTTTA-TTCCTAAAAT-ATTGATTTCTCAT
65 CCCCGTTATCTCCGAGGAGATACTCAAA-CCCCGACTTTATTTCC--AAATCATCAATTTCTCAC
* *
3306041 AATCAGGGATGCTCCAACCCCATTA-TTTCTGA
127 AATCAGGGATACTCCAACCCCATTATTTTC-AA
* * *
3306073 GGGGATACTCCAACCCTGGCTTTATTT-CTAAAATACTAATTTCTT-ATAATCGGGGATACTCCA
1 GGGGATACTCCAACCC-GACTTTATTTCCAAAAATACTAATTT-TTCACAATCGGGGATACTCCA
* * * *
3306136 ACCCCGTTATCTCCGAGGGGATACTCCAACCCCGATTTTATTTCCAAATCATCAATTTTTCACAA
64 ACCCCGTTATCTCCGAGGAGATACTCAAACCCCGACTTTATTTCCAAATCATCAATTTCTCACAA
* **
3306201 TCGGGGATACTCCAACCCTGTTATTTTCAA
129 TCAGGGATACTCCAACCCCATTATTTTCAA
3306231 GGGGATACTCCAACCC
1 GGGGATACTCCAACCC
3306247 CGTTACTATC
Statistics
Matches: 149, Mismatches: 20, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
157 4 0.03
158 57 0.38
159 64 0.43
160 24 0.16
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (158 bp):
GGGGATACTCCAACCCGACTTTATTTCCAAAAATACTAATTTTTCACAATCGGGGATACTCCAAC
CCCGTTATCTCCGAGGAGATACTCAAACCCCGACTTTATTTCCAAATCATCAATTTCTCACAATC
AGGGATACTCCAACCCCATTATTTTCAA
Found at i:3309716 original size:944 final size:944
Alignment explanation
Indices: 3307216--3312225 Score: 5145
Period size: 944 Copynumber: 5.3 Consensus size: 944
3307206 CATTGCGACA
* * * * * * *
3307216 GTGCCTAATGCTAAAAAGAATAGGGATTTGTTTGAATATTCATGTTTGTCTCATTTAAGAGACAA
1 GTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATATTTGTCTTATTTAAGAGACAA
* * * *
3307281 ACTTTGATTGTATCAAAAAC-GTTAGAAAGAAAAGCTTTTCTTGCAACACCAAAGCGTCAATGTC
66 ACTTTGATTCTATCTAAAACTG-TGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTC
* * * * *
3307345 ATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTCAAAAGACTAGAGACTGTTACGA
130 ATGTATCCTAATGAAGGGAATGTATTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGA
** * * * * *
3307410 GAATCCCTGCTTGCCCTATTTAAGGGATGAACTTTGATTTTAAGAAAAAT-AGGACAAGGAAAAT
195 GAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGG-CAAAGAAAAG
* * ** * * *
3307474 ATTTCTATGCAAAAGAAAATCATTAATATCGGTTGTCCTAATGA-GTAGAATGTATTTATAGTAC
259 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGT-GAATGTGTTTATAGTGC
** * * ** *
3307538 CTAATGTCAAAATGAATGAAGATTATTACAAGAATTTATGTTTGTCTCATTTGAGGCATGAACTT
323 CTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGCCATGAACTT
* **
3307603 AGACTTTATAAAAATTGGTGGGAAAAAAGCCTTTCTT-GCT-AAACCAAAGCATCGGTATCATGT
388 AGACTTTACAAAAATTGGTGGGAAAAAA-CCTTTCTTCG-TGAAACCAAAGCATCAATATCATGT
* * *
3307666 ATCCTATTGAGAAGACTATGTTTATGGTC-CTTAATCCT-AAAAGGAATGGGGATTTGTATGAGA
451 ATCCTAATGAGAAGACTATGTTTATGG-CGCCTAATCCTGAAAA-GAATGGGGATTAGTATGAG-
* * * ** **
3307729 TATGT-TTGTCTCAT-TTAGGAGACAAACTTTGATTTTGTCAAAAA-AATTAAAAGAAAAGCTTT
513 TAT-TCATGT-T--TGTTA--AGACAAACTTTGATTCTATCAAAAATGCTGGAAAGAAAAGCTTT
* ** * * *
3307791 TCTTGCGACACCAAAGCATCAATGTCATGTATTTTAAAGAAGAGAATGTGTTTTTTTGGTTCACA
572 TCTTGCGACACAAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG--TTTTTGGTTCCCA
* * * * * * * * *
3307856 ATCATGAAAAG-ATTAGAGACTATTACGAGAATCGATGTTTGACTTATTTATGTGACGCACTTTG
635 ATCTTGAAAAGAATT-GAGACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTG
* ** * * *
3307920 ATTTTAGGGAAAATAAAGCAAAGAAAAGATTTCCATGC-AAACAAAATCGTCAATATCATTTATG
699 ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATC
* * * * *
3307984 CTAATGAGAAGAAAGTGTTTATAGTGACTAATCACAAAATGTATGAAGATCATTACTAGAATCCA
764 CTAATGAGAAGAATGTGTTTATAGTGCCTAATCACAAAATGAACGAAGATCATTACTAGAATCAA
* *
3308049 TGTTTGGCACATGTGAGGCACAAACTTAGACTTTACAAAAATT-GGTGGG-AAAAAGCCTTTCTT
829 TGTTTGGCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTAGG-GGGAAAAAAGCCTTTCTT
* * * * *
3308112 GTGAAACCAAAGTATTAATATCATGTATCCTAATGAGAAGGCTATATTTATG
893 GCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
* * * * *
3308164 GTGCCTAATCCTGAAAA-AATGGGTATTAGTAAGAGTATTCATATTGGTCTTATTTAAGAGACAG
1 GTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATATTTGTCTTATTTAAGAGACAA
* * *
3308228 ACTTTGATTCTATCAAAAAC-GATGGAAAGAAAAGCTTTT-TTGCAACACTAAAGCATTAATGTC
66 ACTTTGATTCTATCTAAAACTG-TGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTC
* * ** * **
3308291 ATGTATCGTAATGAAGGGAACGCGTTTTTGGTTCCCAATCTTAAAAAGAATGGAGACTATTATAA
130 ATGTATCCTAATGAAGGGAATGTATTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGA
* * * * *
3308356 GAATCAATGCTTGTCTT-TTTAAAGTATGAACTTTGATTTCAAGGAAAATAGGGCAAAGAAAAGA
195 GAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGA
* * * * *
3308420 TTTTCATGCAAAAGAAAATCATCAGTATCTTTTATCCTAAT-ACAGTCAATGTGTTTATAGTGCC
260 TTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA-GGTGAATGTGTTTATAGTGCC
** * * *
3308484 TAATCACAAAATGAAACAAGATCATTACTATAATCTATGTTTAG-CTCATTTTA-CACATGAACT
324 TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT-GTCTCATTTGAGC-CATGAACT
* * * ** * * * **
3308547 TACACTTTACATAATTTGG-GAGGAAGAAAGGCTTTCTT-GCGAAACCAAAGAATCAGTATTGTG
387 TAGACTTTACAAAAATTGGTG-GGAA-AAAACCTTTCTTCGTGAAACCAAAGCATCAATATCATG
* * * * * **
3308610 TATCCTTATGA-ATAGACTATGTTTATGGTGCAT-ATCCTG-AAAGAAT-GGCATTTGTATGTCT
450 TATCCTAATGAGA-AGACTATGTTTATGGCGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGT
* * * **
3308671 ATTCATGTTTCTCTTATTTAAGAGTCAAACTTTCATTTTATCAAAAACACTGGAAAGAAAAGCTT
514 ATTCATG----T-TT-GTTAAGA--CAAACTTTGATTCTATCAAAAATGCTGGAAAGAAAAGCTT
* * ** * * * *
3308736 TTTTTACGACA-AAAGAGTGTCATTGTCATTTATCCTAATGAAGGGAAAGTGATTTTGGTTCCCA
571 TTCTTGCGACACAAA-AGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCA
** * *
3308800 ATCTTGAAAAGAACCGAGACTGTTATGAGAATTGATGCTTATCTTATTTAAGGGATGAACTTTGA
635 ATCTTGAAAAGAATTGAGACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGA
* * * *
3308865 TTTTAAGGAAAATAGGGTAAAGAAAATATTTCCATGCAAAAAAAAAATCATCAATATCATTTGTC
700 TTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGC-AAAAGAAAATCATCAATATCATTTATC
* *
3308930 CTAATGAGAAGAATGTGTTTATAGTGCCTAGTCACAAAATAAACGAAGATCATTACTAGAATCAA
764 CTAATGAGAAGAATGTGTTTATAGTGCCTAATCACAAAATGAACGAAGATCATTACTAGAATCAA
* * * * * * * * *
3308995 TGTTTGTCTCATTTGAAGCCCGAACTTATACTTCACAAAAACTAGTGGGAAAAAAGCCTTTGTTG
829 TGTTTGGCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTAGGGGGAAAAAAGCCTTTCTTG
* *
3309060 CGAAATCAAAGCATCAAATATCATGTATCCTAATGAGAAAACTATGTTTATG
894 CGAAACCAAAGCATC-AATATCATGTATCCTAATGAGAAGACTATGTTTATG
* * *
3309112 GTACCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATT-ATTATTTGTCTTACTTAGGAGACA
1 GTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCA-TATTTGTCTTATTTAAGAGACA
* ** * *
3309176 AACTTTGATTCTACCTAAAACTGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCCATATC
65 AACTTTGATTCTATCTAAAACTGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTC
** * * *
3309241 ATGTATCCTAATGTGGGGAATGTATTTTTGGTTCCCAATCTTGAAAGGAGTGGAGACTATTGCGA
130 ATGTATCCTAATGAAGGGAATGTATTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGA
* * *
3309306 GAATCGATGCTTGTCTTATTTAGGGGATGAACTTTGATTTTAAGGCAAATAAGGCAAAAAAAAGA
195 GAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGA
* * * * *
3309371 TTTCCATGTAAAAGAAAATCTTCCATATCATTTATCCTAATGAGGTCAATGTGTTTATAATGCCT
260 TTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGTGAATGTGTTTATAGTGCCT
* * * * *
3309436 AATCATAAAATGAATGAAGATCTTTACTAGAATCCATATTTGTCTCATTTGAGCCATAAACGTAG
325 AATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGCCATGAACTTAG
* * * * *
3309501 ACTCTACAAAAATTGGCGGGAAAAAACCTTT-TTCGTGAATCCAAAGCATCAATATCTTGTACCC
390 ACTTTACAAAAATTGGTGGGAAAAAACCTTTCTTCGTGAAACCAAAGCATCAATATCATGTATCC
* * * * *
3309565 TAAAGAGAAGACTATATTTATGGCACCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTCAA
455 TAATGAGAAGACTATGTTTATGGCGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCAT
* * *
3309630 GTTTGTT-AGACAAACTTTGATTCTATCAAAAATGTTAGAAAGAAAAGCTTTTCTTGCAACACAA
520 GTTTGTTAAGACAAACTTTGATTCTATCAAAAATGCTGGAAAGAAAAGCTTTTCTTGCGACACAA
* *
3309694 AAGAAGT-AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAGAA-
585 AAGCA-TCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAAT
* * * *
3309757 TGTAAACTGTTATGAGAATCGATGCTTGTCTT-TTATAAGAGATGAATTTTGATTTTATGGAAAA
649 TG-AGACTGTTATGAGAATCGATGCTTGTCTTATT-TAAGGGATGAACTTTGATTTTAAGG--AA
* * *
3309821 AATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAGTTTCATTTATCCTAATGAGGAG
710 AATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAG
* * * * **
3309886 AATGTGTTTATAGCGCCTAATCACAAAATGAGCGAATATCATTACTAGAACCAATGTTCAGCTCA
775 AATGTGTTTATAGTGCCTAATCACAAAATGAACGAAGATCATTACTAGAATCAATGTTTGGCTCA
* * *
3309951 TTTGAGGCACAAACTTAGACTTTACGAAAATTGGGGGGAAGAAAGCCTTTCTTGC-AAAGCCAAA
840 TTTGAGGCACAAACTTAGACTTTACAAAAATTAGGGGGAAAAAAGCCTTTCTTGCGAAA-CCAAA
* * *
3310015 GCTTCAATATCATGTTTTC-AAGTGAGAAGACTATGTTTATG
904 GCATCAATATCATGTATCCTAA-TGAGAAGACTATGTTTATG
* * * * *
3310056 GTGCCTAATCCTGAAAAGAATGGGGATTAGTAAGAGTATTAATGTTTGTCTTATTTAAGGGACAA
1 GTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATATTTGTCTTATTTAAGAGACAA
* * * * *
3310121 ACTTTCATTCTATCTAAAACTGTGGAAAAAAAAGCTTTTCTTGCGAGACCAAAGCATCAATAT-A
66 ACTTTGATTCTATCTAAAACTGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCA
* * * * * **
3310185 GTGTATCCTAAAGAAGGGAATGTGTTTTTGGTTCCTAATCTTCAAACGAATGGAGACTATTTTGA
131 -TGTATCCTAATGAAGGGAATGTATTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGA
* * *
3310250 GAGTTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT-AGGAGAAAGAAAAG
195 GAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGG-CAAAGAAAAG
* * *
3310314 ATTTCAATGCAAAAGAAAATCATCAATATCTTTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
259 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGTGAATGTGTTTATAGTGCC
* * * * * * *
3310379 TAATCACAAAATAAATGAAAATCATTGCTAGAATCCTTGTTTGGCTCGTTTGATG-CACGAACTT
324 TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA-GCCATGAACTT
* *
3310443 AGACTTTACAAAAATTGATGGGAAAAAACGTTTCTTC-TGAAACCAAAGCATCAATATCATGTAT
388 AGACTTTACAAAAATTGGTGGGAAAAAACCTTTCTTCGTGAAACCAAAGCATCAATATCATGTAT
* * * * *
3310507 CCTAATGAAAAGACTATGTCTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGCAAGAGTATTC
453 CCTAATGAGAAGACTATGTTTATGGCGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTC
* * * *
3310572 ATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTACCTAAAACTG-TGGAAAAAAAAGCTTTTC
518 ATGTTTG------TT-A-AGACAAACTTTGATTCTATC-AAAAATGCTGGAAAGAAAAGCTTTTC
* ** * * *
3310636 TTGCGACACCAAAGCATTGATATCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTTCGAATCT
574 TTGCGACACAAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCT
* * * *
3310701 TGAAAAGAATGGAGACTATTATGAGAATTGATGCTTGTTTTATTTAAGGGATGAACTTTGA-TTT
639 TGAAAAGAATTGAGACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT
* * ** * *
3310765 AAGGCAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGTAAATCATCTGTGTCATTTACCCTAAT
704 AAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
* *** *
3310830 GTGGTCAATGTGTTTATAGTGCCTAATCA-AGAAA-GAAC----ATCGTTACTAGAATTC-ATGT
769 GAGAAGAATGTGTTTATAGTGCCTAATCACA-AAATGAACGAAGATCATTACTAGAA-TCAATGT
* * * * * *
3310888 TTGGCTCATTT-A-GTAAATGAACTTAAACTTTACAAAAATTAGGGGGGAGAAAGCTTTTCTTGC
832 TTGGCTCATTTGAGGCACA--AACTTAGACTTTACAAAAATTAGGGGGAAAAAAGCCTTTCTTGC
* * * * * *
3310951 GGAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGATTACGTTTATA
895 GAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
* * * * * *
3311001 ATGCCTAATCCTAAAAAGAATGGGCATTTGTATGACTATT-AT-TTT-TCTTATTTAAAAGATAA
1 GTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATATTTGTCTTATTTAAGAGACAA
** * * * *
3311063 ACTTTGATTCTGCCTAAAACTGTGGAAAGAAAAGCTTTTCTTACAACACCAGAGCATCTACGTCA
66 ACTTTGATTCTATCTAAAACTGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCA
*
3311128 TGTAT-ATAA--AAGGGAATGTATTTTTGGTTCCCAATCTTG---A-AA---AGA--ATT----G
131 TGTATCCTAATGAAGGGAATGTATTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGAG
*
3311177 -A--GA--C-TG--TTA--T--GGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
196 AATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGAT
* * * * * **
3311230 TTCCAAGCAAAAAAAAAAAATCATCAATATTATTTATCCTAATGAGGAGAATGTGTTTATAATTT
261 TTCCATGC---AAAAGAAAATCATCAATATCATTTATCCTAATGAGGTGAATGTGTTTATAGTGC
* * * * * * * *
3311295 TTAATTACAAAATGAATGAAGATCATAACTAGAATGCATGGTTGTCTCATTTGAGGCATCAACAT
323 CTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGCCATGAACTT
* * * *
3311360 AGACTTTACAAAAATTAGTAGGAAAAAACTTTTCTT-G-CAAATCCAAAGCATCAATATCATGTA
388 AGACTTTACAAAAATTGGTGGGAAAAAACCTTTCTTCGTGAAA-CCAAAGCATCAATATCATGTA
* * * *
3311423 TCCTAACGAGAAGACTATGCTTAT-GCTGCCTAATCTTGAAAAGAAT-GGGATTAGTATGACTAT
452 TCCTAATGAGAAGACTATGTTTATGGC-GCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTAT
* * * * * * *
3311486 GCATGTTTGTCTTATTTGAAAGAGAAACTTCGATT-TCTCTTAGAGTCGCTGGAAA-AAAAGCTT
516 TCATGTTTG------TT--AAGACAAACTTTGATTCTATC-AAAAAT-GCTGGAAAGAAAAGCTT
* * * * * *
3311549 TT-TCTACGACACTAGAGCATCTATGTCATGTATCCTAACGAAGGGAATGTGTTTTTGGTTCCTA
571 TTCT-TGCGACACAAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCA
* * ** *
3311613 ATCTTGAAAAGAATTGAAACTGTTACGAGAATCGATGCTTGTCTTATTTAA-TCATTAAACTTTG
635 ATCTTGAAAAGAATTGAGACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGA-TGAACTTTG
* **
3311677 ATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTTATGCAAAAGAAAATCATCAATATCATTTATC
699 ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATC
* * *
3311742 CTAAAGA-AGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCT
764 CTAATGAGA-AGAATGTGTTTATAGTGCCTAATCACAAAATGAACGAAGATCATTACTAGAATCA
* * * **
3311806 ATGTTTGTCTCATTTGAGGCACAAACATAGACTTTA-AAGCAATTAGCAGGAAAAAAGCCTTTCT
828 ATGTTTGGCTCATTTGAGGCACAAACTTAGACTTTACAA-AAATTAGGGGGAAAAAAGCCTTTCT
* *
3311870 TAC-AAATCCAAAGCATCAATATCATGTATCCTAACGAGAAGACTATGTTTATG
892 TGCGAAA-CCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
* * * *
3311923 GTGCCTAAACCTGAAAAGAATGGGGATTAGTATGGGTATTCATGA-TTATCTTATTTAAGAGACA
1 GTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCAT-ATTTGTCTTATTTAAGAGACA
* * *
3311987 AACTTTGATTCTATCTAAAACTGTAGAAAGAAATGCTTTTCTTGCGACACCAAAGCATCAATGTC
65 AACTTTGATTCTATCTAAAACTGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTC
* * * * *
3312052 ATGTATCCAAATGAAGGGAATGTATTTTTGGTTTCCTATCGTGAAAAGAATTGAGACTATTACGA
130 ATGTATCCTAATGAAGGGAATGTATTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGA
* * * *
3312117 GAATAGATGCTTGTCTTATTTAAAGGATG-ACTTTGATTTTGAA-GAAAATATGGCAACGAAAAG
195 GAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT-AAGGAAAATAAGGCAAAGAAAAG
* * *
3312180 ATTTCCACGCAAAATAAAATCATCAATATCATTTACCCTAATGAGG
259 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGG
3312226 AGAAAAGTTT
Statistics
Matches: 3378, Mismatches: 550, Indels: 267
0.81 0.13 0.06
Matches are distributed among these distances:
914 44 0.01
915 10 0.00
916 165 0.05
917 281 0.08
918 7 0.00
920 2 0.00
921 7 0.00
922 131 0.04
923 5 0.00
924 5 0.00
925 76 0.02
926 3 0.00
928 27 0.01
930 3 0.00
931 1 0.00
932 5 0.00
935 5 0.00
937 3 0.00
939 27 0.01
940 1 0.00
941 9 0.00
942 83 0.02
943 24 0.01
944 728 0.22
945 520 0.15
946 300 0.09
947 103 0.03
948 66 0.02
949 117 0.03
950 225 0.07
951 169 0.05
952 55 0.02
953 162 0.05
954 9 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (944 bp):
GTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATATTTGTCTTATTTAAGAGACAA
ACTTTGATTCTATCTAAAACTGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCA
TGTATCCTAATGAAGGGAATGTATTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGAG
AATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGAT
TTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGTGAATGTGTTTATAGTGCCTA
ATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGCCATGAACTTAGA
CTTTACAAAAATTGGTGGGAAAAAACCTTTCTTCGTGAAACCAAAGCATCAATATCATGTATCCT
AATGAGAAGACTATGTTTATGGCGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATG
TTTGTTAAGACAAACTTTGATTCTATCAAAAATGCTGGAAAGAAAAGCTTTTCTTGCGACACAAA
AGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATTG
AGACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGG
GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAGAATGTG
TTTATAGTGCCTAATCACAAAATGAACGAAGATCATTACTAGAATCAATGTTTGGCTCATTTGAG
GCACAAACTTAGACTTTACAAAAATTAGGGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAA
TATCATGTATCCTAATGAGAAGACTATGTTTATG
Found at i:3310211 original size:159 final size:158
Alignment explanation
Indices: 3307253--3310763 Score: 692
Period size: 159 Copynumber: 22.2 Consensus size: 158
3307243 TTGTTTGAAT
* * * * * *
3307253 ATTCATGTTTGTCTCATTTAAGAGACAAACTTTGATTGTATCAAAAAC-GTTAGAAAGAAAAGCT
1 ATTCATGTTTGTCTTATTTAAGGGACAAACTTTGATTCTA-CTAAAACTG-TGGAAAAAAAAGCT
* * * * *
3307317 TTTCTTGC-AACACCAAAGCGTCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCC
64 TTTCTTGCGAA-ACCAAAGCATCAATATCATGTATCCTAATGAAGGGAATGTGTTTATGGTGCCT
* * * * * * *
3307381 AATCTTCAAAAGACTAGAGACTGTTACGAGA
128 AATCCTGAAAAGAATGGAGATTATTAAGAGA
* * * * * ** * ** * * *
3307412 ATCCCTGCTTGCCCTATTTAAGGGATGAACTTTGATTTTAAGAAAAAT-AGGACAAGGAAAA--T
1 ATTCATGTTTGTCTTATTTAAGGGACAAACTTTGATTCTACTAAAACTGTGGA-AA-AAAAAGCT
* ** * * * * * * * *
3307474 ATTTCTATGCAAAAGAAAATCATTAATATC-GGTTGTCCTAATG-AGTAGAATGTATTTATAGTA
64 -TTTCT-TGCGAAACCAAAGCATCAATATCATG-TATCCTAATGAAG-GGAATGTGTTTATGGTG
* * *
3307537 CCTAAT-GTCAAAATGAATGAAGATTATTACA-AGA
125 CCTAATCCTGAAAA-GAATGGAGATTATTA-AGAGA
* * * * ** * * *
3307571 ATTTATGTTTGTCTCATTTGAGGCATGAACTTAGACTT-TA-TAAAAATTGGTGG-GAAAAAAGC
1 ATTCATGTTTGTCTTATTTAAGGGACAAACTTTGA-TTCTACT-AAAACT-GTGGAAAAAAAAGC
* * ** * * * *
3307633 CTTTCTTGCTAAACCAAAGCATCGGTATCATGTATCCTATTG-AGAAGACTATGTTTATGGT-CC
63 TTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAG-GGAATGTGTTTATGGTGCC
* *
3307696 TTAATCCT-AAAAGGAATGGGGATT-TGTATGAG-
127 -TAATCCTGAAAA-GAATGGAGATTAT-TAAGAGA
* * * * *
3307728 A-T-ATGTTTGTCTCATTT-AGGAGACAAACTTTGATTTTGTCAAAAAAAT-T--AAAAGAAAAG
1 ATTCATGTTTGTCTTATTTAAGG-GACAAACTTTGATTCT-AC-TAAAACTGTGGAAAA-AAAAG
* * ** * * * *
3307787 CTTTTCTTGCGACACCAAAGCATCAATGTCATGTATTTTAAAGAAGAGAATGTGTTTTTTTGGTT
62 CTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAGGGAATGTG--TTTATGGTG
* * * * *
3307852 CAC-AATCATGAAAAGATTAGAGACTATTACGAGA
125 C-CTAATCCTGAAAAGAATGGAGATTATTAAGAGA
* * * ** * ** ** * * *
3307886 A-TCGATGTTTGACTTATTTATGTGACGCACTTTGATTTTAGGGAAAA-TAAAGCAAAGAAAAGA
1 ATTC-ATGTTTGTCTTATTTAAGGGACAAACTTTGATTCTA-CTAAAACT-GTGGAAAAAAAAGC
* * * * * * * * * * *
3307949 TTTCCATGC-AAACAAAATCGTCAATATCATTTATGCTAATG-AGAAGAAAGTGTTTATAGTGAC
63 TTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAG-GGAATGTGTTTATGGTGCC
* * * **
3308012 TAATCAC--AAAATGTATGAAGATCATTACTAGA
127 TAATC-CTGAAAA-GAATGGAGATTATTAAGAGA
* * ** * * * * * * * *
3308044 ATCCATGTTTGGCACATGTGAGGCACAAACTTAGACTT-TACAAAAATTGGTGG--GAAAAAGCC
1 ATTCATGTTTGTCTTATTTAAGGGACAAACTTTGA-TTCTACTAAAACT-GTGGAAAAAAAAGCT
* * * * * * *
3308106 TTTCTTGTGAAACCAAAGTATTAATATCATGTATCCTAATGAGAAGG-CTATATTTATGGTGCCT
64 TTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA-AGGGAATGTGTTTATGGTGCCT
* *
3308170 AATCCTGAAAA-AATGG-GTATTAGTAAGAGT
128 AATCCTGAAAAGAATGGAG-ATTATTAAGAGA
* * * * * *
3308200 ATTCATATTGGTCTTATTTAAGAGACAGACTTTGATTCTATCAAAAAC-GATGGAAAGAAAAGCT
1 ATTCATGTTTGTCTTATTTAAGGGACAAACTTTGATTCTA-CTAAAACTG-TGGAAAAAAAAGCT
* * * * * * * * *
3308264 TTT-TTGC-AACACTAAAGCATTAATGTCATGTATCGTAATGAAGGGAACGCGTTTTTGGTTCCC
64 TTTCTTGCGAA-ACCAAAGCATCAATATCATGTATCCTAATGAAGGGAATGTGTTTATGGTGCCT
* * *
3308327 AATCTTAAAAAGAATGGAGACTATTATA-AGA
128 AATCCTGAAAAGAATGGAGATTATTA-AGAGA
* * * ** * ** *
3308358 A-TCAATGCTTGTCTT-TTTAAAGTATGAACTTTGATTTCAAGGAAAA-TAG-GGCAAAGAAAAG
1 ATTC-ATGTTTGTCTTATTTAAGGGACAAACTTTGA-TTCTACTAAAACT-GTGG-AAAAAAAAG
* * * ** * * * * ** *
3308419 ATTTTCATGCAAAAGAAAATCATCAGTATCTTTTATCCTAAT-ACAGTCAATGTGTTTATAGTGC
62 CTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA-AGGGAATGTGTTTATGGTGC
*** * ** *
3308483 CTAATCAC--AAAATGAAACAAGATCATTACTATA
126 CTAATC-CTGAAAA-GAATGGAGATTATTAAGAGA
* * * ** * * *
3308516 A-TCTATGTTTAG-CTCATTTTA--CACATGAACTTACACTT-TAC-ATAA-TTTGGGAGGAAGA
1 ATTC-ATGTTT-GTCTTATTTAAGGGACA--AACTTTGA-TTCTACTAAAACTGT-GGA--AAAA
* * * ** * ** * *
3308574 AAGGC-TTTCTTGCGAAACCAAAGAATCAGTATTGTGTATCCTTATGAATAGACTATGTTTATGG
58 AAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAGGGAATGTGTTTATGG
* * * ***
3308638 TGCAT-ATCCTG-AAAGAATGG-CATT-TGTATGTCT
123 TGCCTAATCCTGAAAAGAATGGAGATTAT-TAAGAGA
* * * * * * ** *
3308671 ATTCATGTTTCTCTTATTTAAGAGTCAAACTTTCATTTTATCAAAAACACTGGAAAGAAAAGCTT
1 ATTCATGTTTGTCTTATTTAAGGGACAAACTTTGATTCTA-CTAAAACTGTGGAAAAAAAAGCTT
* * ** * * * * *
3308736 TTTTTACGACAA--AAGAGTGTCATTGTCATTTATCCTAATGAAGGGAAAGTGATTT-TGGTTCC
65 TTCTTGCGA-AACCAA-AGCATCAATATCATGTATCCTAATGAAGGGAATGTG-TTTATGGTGCC
* * ** * * *
3308798 CAATCTTGAAAAGAACCGAGACTGTTATGAGA
127 TAATCCTGAAAAGAATGGAGATTATTAAGAGA
* * * ** * ** * **
3308830 ATTGATGCTTATCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAA-TAG-GGTAAAGAAAATA
1 ATTCATGTTTGTCTTATTTAAGGGACAAACTTTGATTCT-ACTAAAACT-GTGG-AAAAAAAAGC
* * * ** * * * * *
3308893 TTTCCATGCAAAAAAAAAATCATCAATATCATTTGTCCTAATG-AGAAGAATGTGTTTATAGTGC
63 TTTTCTTGC-GAAACCAAAGCATCAATATCATGTATCCTAATGAAG-GGAATGTGTTTATGGTGC
* * * * * **
3308957 CTAGTCAC--AAAATAAACGAAGATCATTACTAGA
126 CTAATC-CTGAAAA-GAATGGAGATTATTAAGAGA
* ** * * *
3308990 A-TCAATGTTTGTCTCATTTGAA-GCCCGAACTTAT-ACTTC-ACAAAAACTAGTGG-GAAAAAA
1 ATTC-ATGTTTGTCTTATTT-AAGGGACAAACTT-TGA-TTCTACTAAAACT-GTGGAAAAAAAA
* * * ** *
3309050 GCCTTTGTTGCGAAATCAAAGCATCAAATATCATGTATCCTAATG-AGAAAACTATGTTTATGGT
61 GCTTTTCTTGCGAAACCAAAGCATC-AATATCATGTATCCTAATGAAGGGAA-TGTGTTTATGGT
* * * * * *
3309114 ACCTAATCCTAAAAAGAATGGGGATTAGTATGAGT
124 GCCTAATCCTGAAAAGAATGGAGATTATTAAGAGA
* * *
3309149 ATT-ATTATTTGTCTTACTT-AGGAGACAAACTTTGATTCTACCTAAAACTGTGGAAAGAAAAGC
1 ATTCA-TGTTTGTCTTATTTAAGG-GACAAACTTTGATTCTA-CTAAAACTGTGGAAAAAAAAGC
* * * ** * * * *
3309212 TTTTCTTGTGACACCAAAGCATCCATATCATGTATCCTAATGTGGGGAATGTATTTTTGGTTCCC
63 TTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAGGGAATGTGTTTATGGTGCCT
* * * * **
3309277 AATCTTGAAAGGAGTGGAGACTATTGCGAGA
128 AATCCTGAAAAGAATGGAGATTATTAAGAGA
* * ** * *** ** *
3309308 A-TCGATGCTTGTCTTATTTAGGGGATGAACTTTGATTTTAAGGCAAA-TAAGGCAAAAAAAAGA
1 ATTC-ATGTTTGTCTTATTTAAGGGACAAACTTTGATTCT-ACTAAAACTGTGG-AAAAAAAAGC
* * ** ** * * * * * **
3309371 TTTCCATGTAAAAGAAAATCTTCCATATCATTTATCCTAATG-AGGTCAATGTGTTTATAATGCC
63 TTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAGG-GAATGTGTTTATGGTGCC
* * **
3309435 TAATCAT-AAAATGAATGAAGATCT-TTACTAGA
127 TAATCCTGAAAA-GAATGGAGAT-TATTAAGAGA
* * * * ** * * * * * * ** *
3309467 ATCCATATTTGTCTCATTTGAGCCATAAACGTAGACTCTACAAAAATTG-GCGGGAAAAAACCTT
1 ATTCATGTTTGTCTTATTTAAGGGACAAACTTTGATTCTACTAAAACTGTG-GAAAAAAAAGCTT
* * * * * * * * * * **
3309531 TT-TCGTGAATCCAAAGCATCAATATCTTGTACCCTAAAG-AGAAGACTATATTTATGGCACCTA
65 TTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAG-GGAATGTGTTTATGGTGCCTA
* * * * *
3309594 ATCTTGAAAAGAATGGGGATTAGTATGAGT
129 ATCCTGAAAAGAATGGAGATTATTAAGAGA
* * * *
3309624 ATTCAAGTTTG------TT-A--GACAAACTTTGATTCTA-TCAAAAATGTTAGAAAGAAAAGCT
1 ATTCATGTTTGTCTTATTTAAGGGACAAACTTTGATTCTACT-AAAACTG-TGGAAAAAAAAGCT
* * * *
3309679 TTTCTTGC-AACACAAAAGAAGT-AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGAT-C
64 TTTCTTGCGAA-ACCAAAGCA-TCAATATCATGTATCCTAATGAAGGGAATGTGTTTATGG-TGC
* * * * * * *
3309741 CCAATCTTGAAAAGAATGTAAACTGTTATGAGA
126 CTAATCCTGAAAAGAATGGAGATTATTAAGAGA
* * ** * * * *
3309774 A-TCGATGCTTGTCTT-TTATAAGAGATGAATTTTGATTTTA-TGGAAAAAATAG-GGCAAAGAA
1 ATTC-ATGTTTGTCTTATT-TAAGGGACAAACTTTGATTCTACT---AAAACT-GTGG-AAAAAA
* * * * ** * * * * *
3309835 AAGATTTCCATGCAAAAGAAAATCATCAGTTTCATTTATCCTAATG-AGGAGAATGTGTTTATAG
59 AAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAGG-GAATGTGTTTATGG
* ** * * * **
3309899 CGCCTAATCAC--AAAATGAGCGAATATCATTACTAGA
123 TGCCTAATC-CTGAAAA-GAATGGAGATTATTAAGAGA
* * * * * * * * * ** *
3309935 A-CCAATGTTCAG-CTCATTTGAGGCACAAACTTAGACTT-TACGAAAATTGGGGGGAAGAAAGC
1 ATTC-ATGTT-TGTCTTATTTAAGGGACAAACTTTGA-TTCTACTAAAACTGTGGAAAAAAAAGC
* * * * * * *
3309997 CTTTCTTGC-AAAGCCAAAGCTTCAATATCATGTTTTC-AAGTG-AGAAGACTATGTTTATGGTG
63 TTTTCTTGCGAAA-CCAAAGCATCAATATCATGTATCCTAA-TGAAG-GGAATGTGTTTATGGTG
* * *
3310059 CCTAATCCTGAAAAGAATGGGGATTAGTAAGAGT
125 CCTAATCCTGAAAAGAATGGAGATTATTAAGAGA
* *
3310093 ATTAATGTTTGTCTTATTTAAGGGACAAACTTTCATTCTATCTAAAACTGTGGAAAAAAAAGCTT
1 ATTCATGTTTGTCTTATTTAAGGGACAAACTTTGATTCTA-CTAAAACTGTGGAAAAAAAAGCTT
* * * *
3310158 TTCTTGCGAGACCAAAGCATCAATAT-AGTGTATCCTAAAGAAGGGAATGTGTTTTTGGTTCCTA
65 TTCTTGCGAAACCAAAGCATCAATATCA-TGTATCCTAATGAAGGGAATGTGTTTATGGTGCCTA
* * * * **
3310222 ATCTTCAAACGAATGGAGACTATTTTGAGA
129 ATCCTGAAAAGAATGGAGATTATTAAGAGA
* * * ** * ** *
3310252 GTTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAA-TAG-GAGAAAGAAAAG-
1 ATTCATGTTTGTCTTATTTAAGGGACAAACTTTGATTCT-ACTAAAACT-GTG-GAAAAAAAAGC
* * * ** * * * *
3310314 ATTTCAATGCAAAAGAAAATCATCAATATCTTTTATCCTAATG-AGGAGAATGTGTTTATAGTGC
63 TTTTC-TTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAGG-GAATGTGTTTATGGTGC
* * * * ***
3310378 CTAATCAC--AAAATAAATGAAAATCATTGCTAGA
126 CTAATC-CTGAAAA-GAATGGAGATTATTAAGAGA
* * * ** * * * * * * * * *
3310411 ATCCTTGTTTGGCTCGTTTGATGCACGAACTTAGACTT-TACAAAAATTGATGG-GAAAAAA-CG
1 ATTCATGTTTGTCTTATTTAAGGGACAAACTTTGA-TTCTACTAAAACTG-TGGAAAAAAAAGCT
** * * *
3310473 TTTCTT-CTGAAACCAAAGCATCAATATCATGTATCCTAATGAAAAGACTATGTCTATGGTGCCT
64 TTTCTTGC-GAAACCAAAGCATCAATATCATGTATCCTAATGAAGGGAATGTGTTTATGGTGCCT
* ** *
3310537 AATCCTGAAAAGAATGGGGATTAGCAAGAGT
128 AATCCTGAAAAGAATGGAGATTATTAAGAGA
* *
3310568 ATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTACCTAAAACTGTGGAAAAAAAAGCTT
1 ATTCATGTTTGTCTTATTTAAGGGACAAACTTTGATTCTA-CTAAAACTGTGGAAAAAAAAGCTT
* ** * ** *
3310633 TTCTTGCGACACCAAAGCATTGATATCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTTCGAA
65 TTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAGGGAATGTGTTTATGGTGCCTAA
* * *
3310698 TCTTGAAAAGAATGGAGACTATTATGAGA
130 TCCTGAAAAGAATGGAGATTATTAAGAGA
* * * **
3310727 ATTGATGCTTGTTTTATTTAAGGGATGAACTTTGATT
1 ATTCATGTTTGTCTTATTTAAGGGACAAACTTTGATT
3310764 TAAGGCAAAT
Statistics
Matches: 2336, Mismatches: 799, Indels: 434
0.65 0.22 0.12
Matches are distributed among these distances:
148 18 0.01
149 15 0.01
150 66 0.03
151 5 0.00
154 10 0.00
155 111 0.05
156 108 0.05
157 363 0.16
158 480 0.21
159 833 0.36
160 199 0.09
161 117 0.05
162 11 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (158 bp):
ATTCATGTTTGTCTTATTTAAGGGACAAACTTTGATTCTACTAAAACTGTGGAAAAAAAAGCTTT
TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAGGGAATGTGTTTATGGTGCCTAAT
CCTGAAAAGAATGGAGATTATTAAGAGA
Found at i:3314040 original size:476 final size:476
Alignment explanation
Indices: 3312235--3323058 Score: 11585
Period size: 476 Copynumber: 22.8 Consensus size: 476
3312225 GAGAAAAGTT
* * * *
3312235 TCCATTCTTTTCAAGATTGAGAAGCCAAAACGCATTCCCTTCATTACGATAAATGACATTGATAT
1 TCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATAAATGACATTGATAC
* * * * * * * *
3312300 TTTGTTGTCACAAGAAAAGCTTTTCTCTCCACTATTTTTGATAAATTCATAGATTGCCTCTTGAA
66 TTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAAAATCATAGTTTGTCTCTTAAA
* * * * *
3312365 TACAATAAACATGAATACTCATACTAATCCCCGTTCTGTCCAGGATTAGGTACCATAAACATAGT
131 TACGACAAACATGAATACTCATACTAATCCCCGTTCTTTTCAGGATTAGGCACCATAAACATAGT
* * * * * *
3312430 CTTCTCATTAGGATACAACATATTGATTCTTTGG-TTTCACTAGAAAGGCTTTTCTCTCACCAAT
196 CTTCTCATTAGGATACATCATATTGATGCTTTGGTTTTGA-AAGAAAGGCTTTTTTCCCACCAAT
* * * * *
3312494 TTTTGTAAGGTATAAGTTCGTGCCTCAAATGAGATAAACATGGATTCTAGTAGTGGTCTTCATTC
260 TTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTC
* * * * *
3312559 ATTTTGTTATTATGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATAATTTTATT
325 ATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGATAAATGATATTGATGATTTTCTT
* * * *
3312624 TTACATGCAAATCTTTTCTTTGCCTTATTTTCTTTAAAATCAAAGTTTC-TCCC-TAAATAAGAC
390 TTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAG-TTCATCCCTTAAATAAGAC
*
3312687 AAGCATCGATTCTCTTAATAGTC
454 AAGCATCGATTCTCGTAATAGTC
* * * * * *
3312710 TCCATTCTTTTCAAGATTGTGAACCCAAAACGCATTCCATTTATTAGGTTAAATGACATTGATAC
1 TCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATAAATGACATTGATAC
* * ** * * *
3312775 TTTGGCGTTGCAAGAAAAGCTTTT-TTTCCACTGTTTTTGATTCAATCATAGATTATCTCTAAAA
66 TTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAAAATCATAGTTTGTCTCTTAAA
* * *
3312839 TACGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCCCCATAAACATAGT
131 TACGACAAACATGAATACTCATACTAATCCCCGTTCTTTTCAGGATTAGGCACCATAAACATAGT
** *
3312904 CTTCTCATTTTGATACATCATATTGATGCTTTGG-TTTCACAAGAAAGGCTTTTTT-CCACCAAT
196 CTTCTCATTAGGATACATCATATTGATGCTTTGGTTTTGA-AAGAAAGGCTTTTTTCCCACCAAT
* * * * * *
3312967 TTTTATAAAGTCCAAGATT-GTGCCTTAAATGAGAC-AACTATTTGATTTTAGCAATGATCTTCA
260 TTTTGTAAAGTCTAAG-TTCGTGCCTCAAATGAGACAAAC-A-TGGATTCTAGTAATGATCTTCA
* *
3313030 TTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGATTAATAATATTGATGATTTT
322 TTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGATAAATGATATTGATGATTTT
* * * * * *
3313095 TTTTTGGATGGACATCTTTTCTTTGCCCTATTTTCCTTGAAATCAAAGTTCATCCCTTAAAGAAA
387 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAG
*
3313160 ACAAGCATCGATTCTCGTAGTAGTC
452 ACAAGCATCGATTCTCGTAATAGTC
* * * * *
3313185 TCCATTCTTTTCAAGATTAGGAAGCCAAAATACATTCCCTCCATTAAGATACAA-GACATTAAT-
1 TCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATA-AATGACATTGATA
* * * * * * ** * *
3313248 GTGTTGGAGTCGAAAAAAAAAGCTTTTCTTTACACAGTTTTTGATGGAATCAAAGTTTATCTCTT
65 CT-TTGGTGTCG-CAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAAAATCATAGTTTGTCTCTT
* * * * * *
3313313 AAATATGACAAAGATGAATACTCATACTAATCCACGTTCTTTTCAGGATTAGGCACTATAAATAG
128 AAATACGACAAACATGAATACTCATACTAATCCCCGTTCTTTTCAGGATTAGGCACCATAAACAT
* * * * *
3313378 AGTCTTTTCATTAGGATACATCATATTAATGCTTTGGTTTCGCAAAAAAAGGCTTTTTTCTCACC
193 AGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTTG-AAAGAAAGGCTTTTTTCCCACC
* * *
3313443 AATTTTTGTAAAGTTTAAGTTCATGCCTCAAATAAGACAAACATGGATTCTAGTAATGATCTTCA
257 AATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCA
* **
3313508 TTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGACAATTTT
322 TTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGATAAATGATATTGATGATTTT
* * ** * ** * *
3313573 ATTTTTCCCGGAAATCTTTTCTTTGCCCTATTTTTCTTAAAATCAAAGTTTGTCCTTTAAATAAA
387 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAG
* * * *
3313638 ACAAACATCGATTCTCGTAACAATA
452 ACAAGCATCGATTCTCGTAATAGTC
* * * * *
3313663 TCCATTCTTTTCATGATTAGAAAGCCAAAACGCATTCCCTTCTTTAGGATAAATGACATTGATAC
1 TCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATAAATGACATTGATAC
* * * *
3313728 TTTGGTATCGTAAGAAAAGCTTTTTTTTCCACTGTTTTTGATAAAATCATAGATTT-CCTCTTAA
66 TTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAAAATCATAG-TTTGTCTCTTAA
* * *
3313792 ATACGACAAACATGAATACTCATACTAATCCCCATTTTTTTTAGGATTAGGCACCATAAACATAG
130 ATACGACAAACATGAATACTCATACTAATCCCCGTTCTTTTCAGGATTAGGCACCATAAACATAG
** **
3313857 TCTTCTCATTAGGATACATCATAGGGATGCTTTGGTTTTGAAAGAAAGGCTTTTTTCCCATAAAT
195 TCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTTTTCCCACCAAT
* * * ** * *
3313922 TTTCT-TAAAGTGTAAGTTCATGCCTCAAATAAGATGAACATGGATTCTAGTAATGATTTTCTTT
260 TTT-TGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATT
* * * * * *
3313986 CATTTTGTAATTAAGCACTATTAACACATTCTCCTTATTAAGATAAACGATATTG-TGATTTTAT
324 CATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGATAAATGATATTGATGATTTTCT
* *
3314050 TTTGCAT-GAAA----ATCTTTGTCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGAC
389 TTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGAC
3314110 AAGCATCGATTCTCGTAATAGTC
454 AAGCATCGATTCTCGTAATAGTC
* * * * * *
3314133 TCCATTCTTTTCAAGATTAGGAAGTCAAAACGCATTCCCTTCATTATGATACATGACATTGATGC
1 TCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATAAATGACATTGATAC
* * * *
3314198 TTTGGTGTCACAAGACAAGCTTTTCTTTCCACTGTTTTTGTTAGAATCATAGTTTGTCTCTTAAA
66 TTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAAAATCATAGTTTGTCTCTTAAA
* * * * **
3314263 TAC-ATCAAACATGAATACTCATACTAATCCCCATTCTTTTGAGAACTAGATACCATAAACATAG
131 TACGA-CAAACATGAATACTCATACTAATCCCCGTTCTTTTCAGGATTAGGCACCATAAACATAG
* * * * * * * *
3314327 TCTTTTCATTAGCATACATCATATTGATTCTTTAG-TTTCATTAGAATGGCTTTTTTCCCACTAA
195 TCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTTGA-AAGAAAGGCTTTTTTCCCACCAA
* * * * *
3314391 TTTTTGTAAGGTCTAAGTCCGTGTCTCAAATGAGAAAAACATGGACTCTAGTAATGGA-CTTCAT
259 TTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAT-GATCTTCAT
* * *
3314455 TCATTTTGTGATTAGGCACTAGAAACACATTCACCTTATTAGGATAAATGATATTGATGATTTTG
323 TCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGATAAATGATATTGATGATTTTC
** * *
3314520 TTTTGCATAAAAATTTTTTCTTTGTCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGA
388 TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGA
3314585 CAAGCATCGATTCTCGTAATAGTC
453 CAAGCATCGATTCTCGTAATAGTC
* * * * * *
3314609 TCCATTCATTTCAAGATTGGGAAGACAAAATACATTCCTTTCACTAGGATACATGACATTGATAC
1 TCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATAAATGACATTGATAC
* ** * * * *
3314674 TTTAAG-GTCATAAGAGAAGCTTTTCCTTCCACTATTTTTGATAGAATCATAGTTTGTCTCTTAA
66 TTT-GGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAAAATCATAGTTTGTCTCTTAA
* ** * * *
3314738 ATACGACAAACATTAATACTCATACTAATCCAAGTTCTTTTCAAGATTAGGTACCATAAACATTG
130 ATACGACAAACATGAATACTCATACTAATCCCCGTTCTTTTCAGGATTAGGCACCATAAACATAG
* * * * * * *
3314803 TCTTCTCATTAGCATACATCATATTGATTCTTTAG-TTTCACTAGAATGGCTATTTTCCCACCAA
195 TCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTTGA-AAGAAAGGCTTTTTTCCCACCAA
** * * * * * * * * *
3314867 TTTTTGTATGGTCTAAGCTCATGTCTCAAATGAGACAAACATAGACTCTAGAAATGGTCATCAAT
259 TTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATT
* *
3314932 CATTTTGTGATTAGGTACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCT
324 CATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGATAAATGATATTGATGATTTTCT
* *
3314997 TTTGCATGGAAATCTTTTCTTTGCCTTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAAGA
389 TTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAT-AAGA
* * *
3315062 CAAGCATCGTTTC-CTATAATAGTT
453 CAAGCATCGATTCTC-GTAATAGTC
* * * *
3315086 TCCATTCTATTCAAGATTGGGAAGCCAAAACATATTCCCTTTAATAGGATAAATGACATTGATAC
1 TCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATAAATGACATTGATAC
* * *** * * * *
3315151 TTTGGTCTTGCAAGAAAAGCTTTTCTTTCCACCAATTTTGATAGAATTAAAGTTTGTCTCTAAAA
66 TTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAAAATCATAGTTTGTCTCTTAAA
* * *
3315216 TACGGCAAAGATGAATACTCATACTAATCCCCGTTCTTTTCAGGGTTAGGC-CCTATAAACATAG
131 TACGACAAACATGAATACTCATACTAATCCCCGTTCTTTTCAGGATTAGGCACC-ATAAACATAG
* * *
3315280 TCTTCTCATTAGGATACATCATATTGATGGTTTTG-TTTCATAAGAAAGGCTTTTTTCCCACCAA
195 TCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTTGA-AAGAAAGGCTTTTTTCCCACCAA
*** *
3315344 TTTTTGTAAAGTCTAAGTTCGTATTTCAAATGAGACAAACTTGGATTCTAGTAATGATCTTCATT
259 TTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATT
* * *
3315409 CATTTTGTGATTTGGCACTTTAAACACATTCTAC-TATTAGGATAAATGATATTGATGATTTTCT
324 CATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGATAAATGATATTGATGATTTTCT
* * * * * * ** * * * *
3315473 TTTGTATGGTAATGTTTTCTTTACCCTATTTTCCTTTAAATCAATGTTTGTACTTTAGATAAAAC
389 TTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGAC
* * *
3315538 AACCATCGATTCTCATAATAATC
454 AAGCATCGATTCTCGTAATAGTC
* ** *
3315561 TCAATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATGCATGACATTTA-AG
1 TCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATAAATGACATTGATA-
** * * * *
3315625 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTGGATAGAATCAAAGTTTATCTCTTAA
65 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAAAATCATAGTTTGTCTCTTAA
* * * * *
3315690 ATAAGACAAACATGAATACACATACTAATCCCCATTCTTTTCAGGATTAGGCAACATAAACATTG
130 ATACGACAAACATGAATACTCATACTAATCCCCGTTCTTTTCAGGATTAGGCACCATAAACATAG
* * * ** * * *
3315755 TCTTTTTATTATGATACATCATATTGATGCTTTGACTTTGCAAGAAAGG-TTTTTTTCCACAAAT
195 TCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTTTTCCCACCAAT
* * * * *
3315819 TTTCT-TATAGTCTAAGTTCATGCCTCAAATAAAACAAACATTGATTCTAGTAATGATCTTCATT
260 TTT-TGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATT
* * ** * * * * * *
3315883 CTTTTTGTAATTAGAAACTATAAATATAATCTCCTCAATAGGATAAATAATATTGATGATTTTCT
324 CATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGATAAATGATATTGATGATTTTCT
* * ** * * * *
3315948 TTTGCATGAAAATCTTCTT-TTTACCCTATTTTCCTTTCAATCAATGTTTATACCTTAAATAAAA
389 TTTGCATGGAAATCTT-TTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGA
*
3316012 CAA-CATCGATTCTCATAATAGTC
453 CAAGCATCGATTCTCGTAATAGTC
* * **
3316035 TCAATTCTTTTCAAGATTGGGAAGCCAAAACAAATTCCCTTCATTAGGATGCATGACATTGA-AG
1 TCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATAAATGACATTGATA-
* * * * * * *
3316099 CTTTGCTATTGCAAGAAAAGCTTTTCTTTCCACTATTTTTGATAGAACCATAGTTTGTCTCATAA
65 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAAAATCATAGTTTGTCTCTTAA
* * * * * *
3316164 ATAAGACGAACATGAATACTCATACTAATTCCCGTTCTTTTCGGGATTAGGCACAATGAACATAG
130 ATACGACAAACATGAATACTCATACTAATCCCCGTTCTTTTCAGGATTAGGCACCATAAACATAG
* ** * * * * *
3316229 TCTTCCCATTAGGATATGTCATGTTGATACTTTGGTTTCGCAAGAAAAGCTTTTTTCCCACCAAT
195 TCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTTTTCCCACCAAT
* * * * * ** * * *
3316294 TTTTGTAAAATCCAAGATCATGCCTTAAATGAGATGAACATTGATTCTAGTCATAATCTTCATTC
260 TTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTC
* * *
3316359 ATTTTGTGATTAGGCACTATAAACATATTCTCCTCATTAGGATGAATGATATTGATGATTTT-TT
325 ATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGATAAATGATATTGATGATTTTCTT
* *
3316423 TGGCATGGAAATCTTTTCTTTGCCCTATTTTCCATAAAATCAAAGTTCATCCCTTAAATAAGACA
390 TTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACA
* ** *
3316488 AGCATCAATTCTTATAATAGTT
455 AGCATCGATTCTCGTAATAGTC
* * * * * ***
3316510 TCCATTCTTTTAAAGATTAGGAAGCCAAAACACATTCCCTTCATTGGGATATAGGACATTGAGGT
1 TCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATAAATGACATTGATAC
* * * * * * *
3316575 TTTGGAGTTGCAA-AAAACGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTATCTCTTAA
66 TTTGGTGTCGCAAGAAAA-GCTTTTCTTTCCACTGTTTTTGATAAAATCATAGTTTGTCTCTTAA
* *** * *
3316639 ATACGACAAACATGAATACTTATACTAATCAATGTTCATTTT-AGGATTAGTCACCATAAATATA
130 ATACGACAAACATGAATACTCATACTAATCCCCGTTC-TTTTCAGGATTAGGCACCATAAACATA
* * * * * * *
3316703 GCCTTCTCATTCGCATGA-GTCATATTGATGCTTTGGTTTCTCAAA-AAAAGCTTTTTTGCCACC
194 GTCTTCTCATTAGGAT-ACATCATATTGATGCTTTGGTTT-TGAAAGAAAGGCTTTTTTCCCACC
* *
3316766 AATTTTTGTAAAGTTTAAGTTCGTGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCA
257 AATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCA
* * * *
3316831 CTCATTTTGTGATGAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATAATTTT
322 TTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGATAAATGATATTGATGATTTT
* * * * * ** * * *
3316896 ATTTTACGTGGAAATCATCTCTTAACCCTATTTTTCTTAAAATCAAGGTCCATCCCTTAAATAAG
387 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAG
* * * * *
3316961 ACAAGTATCGATTCCCATAACAATC
452 ACAAGCATCGATTCTCGTAATAGTC
* ** * * **
3316986 TCTATTCTTTTCAAGATTGGGAAGCCAAAAGGCATTCCCTTCTTTAGGACAAAAAACATTGATAC
1 TCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATAAATGACATTGATAC
* * * * *
3317051 TTTGGTGTCACAAGAAACGCTTTTCTTTCCACTATTTTTAATAAAATCACA-TATTGTCTCTTAA
66 TTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAAAATCATAGT-TTGTCTCTTAA
* * * * * * * * * *
3317115 ATACTATAAACATTAATACTCAAACTCATCCCTGCTCTTTTCAAGATTACGTACCATAAACATAG
130 ATACGACAAACATGAATACTCATACTAATCCCCGTTCTTTTCAGGATTAGGCACCATAAACATAG
* * ** ** * *
3317180 TCTTCTCATTAGGATACATTATATTGATTCTTCAG-TTACACTAGAAAGGCATTTTTCCCACCAA
195 TCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTTGA-AAGAAAGGCTTTTTTCCCACCAA
* * * * *
3317244 TTTTTGTAAGGTCTAAGTTCATGCCTCAAATGAGACAAACATGGACTCCAGTAATGGTCTTCATT
259 TTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATT
* * * * ** **
3317309 CATTTTGTGATTATGCACTATAAACACATT-TGCCTCATAAGGTTAAATGATACCGACAATTTGT
324 CATTTTGTGATTAGGCACTATAAACACATTCT-CCTTATTAGGATAAATGATATTGATGATTT-T
* * *
3317373 -TTTTGCATGGTAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATCCCTTAAATCAG
387 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAG
*
3317437 ACAACCATCGATTCTCGTAATAGTC
452 ACAAGCATCGATTCTCGTAATAGTC
* * * * *
3317462 TCCACTCTTTTCAAGATTGGGAAGCCAAAACAAATTCCCTTCAATAGGATGCAA-GGCATTGA-A
1 TCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGAT-AAATGACATTGATA
* * * * * * *
3317525 GCTTTGTTATCGCAAGCAAAGCTTTTCTTTCCA-TCATTTTTAATAAAATCAAAGTTTGTCTTTT
65 -CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACT-GTTTTTGATAAAATCATAGTTTGTCTCTT
* * * * * *
3317589 TAATAAGACAAACATGAATGCTCATACTAATCCCTGTTCCTTTC-GAGATTAGGCACCATAAGCA
128 AAATACGACAAACATGAATACTCATACTAATCCCCGTTCTTTTCAG-GATTAGGCACCATAAACA
* * ** * * * * *
3317653 TAGTCTTCTCATTATGATACATTATATTGGCGCTGTCGTTTCGCAAGAAAGGCTTCTTTCCCACC
192 TAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTTTTCCCACC
* * * * * *
3317718 AATTTTCT-TAAGGTCTAAGTTTGTGCCTTAAATGAGATAAACATGGATTCTAGTAACG-GCTTT
257 AATTTT-TGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATC-TT
* *
3317781 CATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTA-GACGGATAAATGATGTTGATGAT
320 CATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTA-GGATAAATGATATTGATGAT
* * * *
3317845 TTTGTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCACCCCTTAAAT
384 TTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAT
* * * * *
3317910 AAAACAGGCATCAATTCCCGTAACAGTC
449 AAGACAAGCATCGATTCTCGTAATAGTC
** ** * *
3317938 TCCATTCTTTTCAAGATTGGGAAGCCAAAATGCATTTGCTTCATTAGGATAAATAACATTGCTAC
1 TCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATAAATGACATTGATAC
* * * * *
3318003 TTTGGGGTCGCAATAAAAGCTTTTCTTTCCATTGATTTTGATAAAATTATAGTTTGTCTCTTAAA
66 TTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAAAATCATAGTTTGTCTCTTAAA
* * * * * *
3318068 TACCACAAACATGAATACTCATACAAATCCTCGTTCTTTTTAGGATTAGGCACCTTAAACAAAGT
131 TACGACAAACATGAATACTCATACTAATCCCCGTTCTTTTCAGGATTAGGCACCATAAACATAGT
* * * ** *
3318133 CTTCTCGTTAGGATACATCATATTCATGCTTTGGTTTTGCAAGAAAGGCTTTTACCCCACCAAAT
196 CTTCTCATTAGGATACATCATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTTTTCCCACCAATT
* * * *
3318198 TTTGTAAGGTTTAAGTTCGTGCCTCAAATAAGACAAACATAGATTCTAGTAATGATCTTCATTCA
261 TTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCA
** * *
3318263 TTTTGTGATTAGGCACTATAAACACATTCTCCTCGTTAGGATAAATGATATTGAAGATTTTTTTT
326 TTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGATAAATGATATTGATGATTTTCTTT
* *
3318328 TGCATGAAAATCTTTTCTTTGCCCTGTTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAA
391 TGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAA
* * * * *
3318393 GTATCTATTCCCGTAACAATC
456 GCATCGATTCTCGTAATAGTC
* * ** * ** **
3318414 TCCACTATTTTCAAGATTAAGAAGCCAAAACGCATTCCCTTTTTTAGGATAAAAAACATTGATAC
1 TCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATAAATGACATTGATAC
* * ** *
3318479 TTTGGTGTCGCAAAAAAAGCTTTTCATTCTGCTGTTTTTAATAAAATCATA-TATTGTCTCTTAA
66 TTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAAAATCATAGT-TTGTCTCTTAA
* * * * * * * * * *
3318543 ATACCATAAACATTAATACTCAAACTCATCCCTGCTCTTTTCAAGACTAGGTACCATAAACATAG
130 ATACGACAAACATGAATACTCATACTAATCCCCGTTCTTTTCAGGATTAGGCACCATAAACATAG
* * * * * * * *
3318608 TTTTCTCATTAGGATGCATCATATTGATTCTTCGG-TTTCACTAGAAAGGCATTTTTCCCACTAA
195 TCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTTGA-AAGAAAGGCTTTTTTCCCACCAA
* * ** *
3318672 TTTTTGTAAGGTCTAAGTTCATGCCTCAAATGAGACAAACATGGCCTCTAGTAATGGTCTTCATT
259 TTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATT
* * * * * *
3318737 CATTTTGTGATTACGCACTATAAACACATTCACCTCATAAGGTTAAATGATATCGA-GAATTTTC
324 CATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGATAAATGATATTGATG-ATTTTC
* *
3318801 TTTTGCATGGTAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATCCCTTAAATAAGA
388 TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGA
*
3318866 CAACCATTC-ATTCTCGTAATAGTC
453 CAAGCA-TCGATTCTCGTAATAGTC
* * ** * *
3318890 TCCATTCCTTTCAAGATTGGGAAGCCAAAACAAATTCCCTTCAACAAGATGCAA-GACATTGA-A
1 TCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGAT-AAATGACATTGATA
* * * * * * * * * * *
3318953 GCTTTGTTATGGCAAGCAAAGCTTTTCTTTCCA-TCATTTTTAATAGAATCAAAATTTTTCTTTT
65 -CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACT-GTTTTTGATAAAATCATAGTTTGTCTCTT
* ** * * * * *
3319017 TAATAAAACAAACATGAATACTTATACTTATCCCTGTTCCTTTC-GAGATTAGGCACCATAAGCA
128 AAATACGACAAACATGAATACTCATACTAATCCCCGTTCTTTTCAG-GATTAGGCACCATAAACA
* * * * * *
3319081 TAGTCTTCTCATTATGATACATTATATTGACGCTTTCGTTTCGCAAGAAAGGCTTTTTTCCCACC
192 TAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTTTTCCCACC
* * * * *
3319146 AATTTTCT-TAAGGTCTAAGTTTGTGCCTTAAATGAGACAAACATGGATTCTAGGAATG-GCTTT
257 AATTTT-TGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATC-TT
* * * *
3319209 CATTCATTTTGTGATTAGGCACTATAAACACATTCTCTTTA-GACAGATAAATGACATTGATGAT
320 CATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTA-GGATAAATGATATTGATGAT
* *
3319273 TTTCTTTTGCATGAAAATCTTTTGTTTGCCCTATTTTCCTTAAAATCAAAGTTCA-CCGCTTAAA
384 TTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCC-CTTAAA
*
3319337 TAAAACAAGCATCGATTCTCGTAATAGTC
448 TAAGACAAGCATCGATTCTCGTAATAGTC
** * *
3319366 TCCATTCTTTTCAAGATTGGGAAGCCAAAATGCATTCGCTTCATTAGGATAAATAACATTGATAC
1 TCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATAAATGACATTGATAC
* * * * * * *
3319431 TTTGGGGTCGCAATAAAAGCTTTTCTTTCTATTGATTTTGATAAAATTATAGTTTGCCTCTTAAA
66 TTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAAAATCATAGTTTGTCTCTTAAA
* *
3319496 TACCACAAACATGAATACTCATACTAATCCTCGTTCTTCTT-AGGATTAGGCACCATAAACATAG
131 TACGACAAACATGAATACTCATACTAATCCCCGTTCTT-TTCAGGATTAGGCACCATAAACATAG
* * * * * *
3319560 CCTTCTCGTTAGGATACATCATATTGATGATTTGGTTTTGCAAGAAAGGCTTTTTCCCCACCAAA
195 TCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTTTTCCCACCAAT
* * * * * *
3319625 TTTTGTAAAGTTTAAGTTTGTGCTTGAAATAAGACAAACATAGATTCTAGTAATGATCTTCATTC
260 TTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTC
* * * * *
3319690 ATTTGGTGATTAGGCACTATAAATACATTCTCCTCATTAGGATAAATGATATTGA-CATTTTTAT
325 ATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGATAAATGATATTGATGA-TTTTCT
* * *
3319754 TTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAGGTTCATCCCTTAAATAAAAG
389 TTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGAC
* * * * *
3319819 AAGTATCTATTCCCGTAACAATC
454 AAGCATCGATTCTCGTAATAGTC
*
3319842 TCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTT-ATTTAGGATGAAA-AACATTGAT
1 TCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCA-TTAGGAT-AAATGACATTGAT
* * *
3319905 ACTTTGGTGTCGCAAGAAAAGCTTTTCATTCCACTGTTTTTAATAAAATCATA-TATTGTCTTTT
64 ACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAAAATCATAGT-TTGTCTCTT
* * * * * * *
3319969 AAATACCATAAACAT-TATACTCAAACTAATCTCCGCTCTTTTCAGGATTAGGTACCATAAACAT
128 AAATACGACAAACATGAATACTCATACTAATCCCCGTTCTTTTCAGGATTAGGCACCATAAACAT
* * * * * * * * *
3320033 CGTTTTCTTATTAGGATACATCATATTGATTCTTCGG-TTTCACTAGAGAGGCATTTTTCCCACC
193 AGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTTGA-AAGAAAGGCTTTTTTCCCACC
* * *
3320097 AATTTTTGT-AAGTTCTAAGTTCATGCCTCAAATGAGACAAACATGGACTCTAGTAATGGTCTTC
257 AATTTTTGTAAAG-TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTC
** * * * * **
3320161 ATTCATTTTGTGATTACACACTATAAACACATT-TGCCTAATAAGGTTAAATGAT-TCTTACAAT
321 ATTCATTTTGTGATTAGGCACTATAAACACATTCT-CCTTATTAGGATAAATGATAT-TGATGAT
* *
3320224 TTTCTTTTGCATGGTAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATCCCTTAAAT
384 TTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAT
*
3320289 AAGACAACCATTC-ATTCTCGTAATAGTC
449 AAGACAAGCA-TCGATTCTCGTAATAGTC
* ** * *
3320317 TCCATTCTTTTCAAGATTGGGAAGCCAAAACAAATTCCCTTCAACAAGATGCAA-GACATTGA-A
1 TCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGAT-AAATGACATTGATA
* * * * * * * * *
3320380 GCTTTGTTATCGCAAGCAAAGCTTTTCTTTCCA-TCATTTTTAATAGAATCAAAATTTGTCTTTT
65 -CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACT-GTTTTTGATAAAATCATAGTTTGTCTCTT
* ** * * * * *
3320444 TAATAAAACAAACATGAATACTTATACTTATCCCTGTTCCTTTC-GAGATTAGGCACCATAAGCA
128 AAATACGACAAACATGAATACTCATACTAATCCCCGTTCTTTTCAG-GATTAGGCACCATAAACA
* * * * * * *
3320508 TAGTCTTCTCATTATGATACATTATATTGACGTTTTCGTTTCGCAAGAAAGGCTTTTTTCCCACC
192 TAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTTTTCCCACC
* * * *
3320573 AATTTTCT-TAAGGTCTAAGTTTGTGCCTTAAATGAGACAAACATGGATTCTAGTAATG-GCTTT
257 AATTTT-TGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATC-TT
* * * *
3320636 CATTCATTTTGTGATTAGGCACTATAAACACATTCTCTTTA-GACAGATAAATGACATTGATGAT
320 CATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTA-GGATAAATGATATTGATGAT
* *
3320700 TTTCTTTTGCATGAAAATCTTTTGTTTGCCCTATTTTCCTTAAAATCAAAGTTCA-CCGCTTAAA
384 TTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCC-CTTAAA
* * *
3320764 TAAGATAAGCATCAATTCCCGTAATAGTC
448 TAAGACAAGCATCGATTCTCGTAATAGTC
** *
3320793 TCCATTCTTTTCAAGATTGGGAAGCCAAAATGCATTCCCTTCTTTAGGATAAATGACATTGATAC
1 TCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATAAATGACATTGATAC
* * *
3320858 TTTGGGGTCGCAATAAAAG-TTTATCTTTCCGCT-TATTTTGATAAAATCATAGTTTGTCTCTTA
66 TTTGGTGTCGCAAGAAAAGCTTT-TCTTTCCACTGT-TTTTGATAAAATCATAGTTTGTCTCTTA
* * * * *
3320921 AATACCACAAACTTGAATACTCATACCAATCCTCGTTCTTTTTAGGATTAGGCACCATAAACATA
129 AATACGACAAACATGAATACTCATACTAATCCCCGTTCTTTTCAGGATTAGGCACCATAAACATA
** * * * * * * *
3320986 GTCTTCTCGCTATGATACATCATATTCATGCTTTGGTTTCGCAAGAAAAGCTTTTTCCCCAGCAA
194 GTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTTTTCCCACCAA
* * * * * *
3321051 ATTTTGTAATGTTTAAGTTCGTGCCTC-AATCAGACAAGCATAGATTCTAGTAATGATCTTCATT
259 TTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATT
* ** * * * *
3321115 CATTTTGTGAATT-GGAAAAATAAGCATATTCTCCTCATTAGGATAAATGATATTGATGGTTTTC
324 CATTTTGTG-ATTAGGCACTATAAACACATTCTCCTTATTAGGATAAATGATATTGATGATTTTC
** * * * * * *
3321179 TTTTGTGTGGAAATCTTTACTTTGCCCTATTTTCCTTTAAATCAATGTTCATACCTTGAATAAGG
388 TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGA
* *
3321244 CAACCATCGATTCTCGAAATAGTC
453 CAAGCATCGATTCTCGTAATAGTC
* * * * * * *
3321268 TCCATTCTTTTGAAGGTTAGGAAGCGAAAACAAATTCCCTTCATTAGGATGCAA-GTCATTGA-A
1 TCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGAT-AAATGACATTGATA
* * * ** * *
3321331 GCTTTTGTGTAC-CAAGCAAAGCTTTTCCTTCCA-TCGATTTTT-ATAGGATCAAAGTTTGTCTT
65 -CTTTGGTGT-CGCAAGAAAAGCTTTTCTTTCCACT-G-TTTTTGATAAAATCATAGTTTGTCTC
* * * ** * *
3321393 TTATATA-AAGCAAGCATGAATACTCATACTAATCCCTATTTTTTTTTCAGGATTAGGCAGCATA
126 TTAAATACGA-CAAACATGAATACTCATACTAATCCC--CGTTCTTTTCAGGATTAGGCACCATA
* * * * *
3321457 AACATAGTCTTCTAATTAAGATACATTATATTGATGCTTTGG-TTTCACAAGAAAGGTTTTTTTC
188 AACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTTGA-AAGAAAGGCTTTTTTC
* * * ** *
3321521 CCACCAATTTTCT-TGAAGTCTTAGTTCGTGCCTCAACTGAGATGAACATGGATTCTAATAATGA
252 CCACCAATTTT-TGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGA
* * * * *
3321585 TTTTCATTCATTTTGTGGTTTGGCACTATAAATACATTCTCCTTA-GACGGATAAATGATATTGA
316 TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTA-GGATAAATGATATTGA
* * * * * *
3321649 AGATTTTCTTCTACATGAAAATCTTTTCTTTGCCCTA-TTTCCTAAAAATCAAAATTCATCCCTT
380 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTT
* * *
3321713 AAATAAGATAAGCATCGATTCCTAG-AATAGTG
445 AAATAAGACAAGCATCGATT-CTCGTAATAGTC
* ** * ** * *
3321745 TTCATTCAATTCAGGATTGGGAAGCCAAAATGCATTCCCTTCTTTAGGATAAATGACATTGACAC
1 TCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATAAATGACATTGATAC
* * * * * *
3321810 TTTGGTGCCGCAAGAAAAGCTTTTCTTTCTACCGATTTTGATAAAATCATAATTTATCTCTTAAA
66 TTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAAAATCATAGTTTGTCTCTTAAA
* *
3321875 TACGACAAACATGAATACTCACACTAATCCCTGTTCTTTTCAGGATTAGGCACCATAAACATAGT
131 TACGACAAACATGAATACTCATACTAATCCCCGTTCTTTTCAGGATTAGGCACCATAAACATAGT
* * * * *
3321940 CTTCTCATTAGGATACATCATATTGATGCTTTAGTTTCGCAAGACAGGCTTTTTTCCC-CCCATT
196 CTTCTCATTAGGATACATCATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTTTTCCCACCAATT
** * * * * *
3322004 TAGGTAAAGTCCAAGATCATGCCTCAAATGAGACAAATATGGATTCAAGTAATGATCTTCATTCA
261 TTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCA
* * * *
3322069 TTTTGTGAATAGGAACTATAAACACATTC-CCTTCATTAAGATAAATGACATTGATGATTTTCTT
326 TTTTGTGATTAGGCACTATAAACACATTCTCCTT-ATTAGGATAAATGATATTGATGATTTTCTT
* * * * * *
3322133 TTGCGTGGAAATCTTTTTTTTGCCCTATGTTCCTTAAAATTAAAGTACATCCCTTAAATAAAACA
390 TTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACA
* *
3322198 AGCATCGATTC-CTATAACAGTC
455 AGCATCGATTCTC-GTAATAGTC
* ** *
3322220 TCCATTCTATTCAAGA-TGTGGAAGCCAAAATGCATTCCCTTCTTTAGGATAAATGACATTGATA
1 TCCATTCTTTTCAAGATTG-GGAAGCCAAAACACATTCCCTTCATTAGGATAAATGACATTGATA
* * * * * *
3322284 CATTGGTGTCGCATGAAAAGCTTTTCTTTCCA-TCGATTTTGATAAAATCATAATTTATCTGTTA
65 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACT-GTTTTTGATAAAATCATAGTTTGTCTCTTA
* * * * * *
3322348 AATTCAATAAACATGAATACTCATACTAGTCCCCGTTCTTTTCAGGACTAGGCACCGTAAACATA
129 AATACGACAAACATGAATACTCATACTAATCCCCGTTCTTTTCAGGATTAGGCACCATAAACATA
* * * * * **
3322413 GTCTTCTCCTCAGGATACACCATATTGATGCTTTGCTTTCGCTAGAAAGGCTTTTTTCCCACCAA
194 GTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTTTTCCCACCAA
* * * * * * *
3322478 TTTTTGTAAAGTCCAAGATCGTGCCTTAAATAAGACAAACATTTGATTCTAGAAATGGTCTTCAT
259 TTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACA-TGGATTCTAGTAATGATCTTCAT
* * *
3322543 TCATTTTGTGATTAGGCACTATAAACATATTCTCCTTAGATA-GATAAATGATATTAATGATTTT
323 TCATTTTGTGATTAGGCACTATAAACACATTCTCCTTA-TTAGGATAAATGATATTGATGATTTT
* * ** * *
3322607 CTTTTGCATGGAAATCTTTTCTTTACCCCATTTTCCTTAAAATCAAAGTTTTTTCCTTAAAAAAG
387 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAG
* *
3322672 ACAAGCATCGATTCTCATAACAGTC
452 ACAAGCATCGATTCTCGTAATAGTC
* * *
3322697 TCCATTCTTTTCAAGATTAGGAAGCCAAAACACATTCCCTTCATTAGGAT-ACTGGACATTGATG
1 TCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATAAAT-GACATTGATA
* * * * ** ** *
3322761 CTTTCGTGTGGCAAAAAAAACTTTTCTTTCTGCCATTTTTGA-AAGAATCATAGTTTATCTCTTA
65 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAA-AATCATAGTTTGTCTCTTA
* * * * * *
3322825 AATATGACAAACATGAATACTCATGCTAATCCCCGTTCTTTTTAAGATTAAGCACCATAAACACA
129 AATACGACAAACATGAATACTCATACTAATCCCCGTTCTTTTCAGGATTAGGCACCATAAACATA
* * * * * * * *
3322890 ATATTCTCATTAGGATACATCATATTGATGTTTTTGTTTTGCACGAAAAGCTTTCTTCCCACCAA
194 GTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTTTTCCCACCAA
* ** * **
3322955 TTTTTGTAAAGTCTAAGATCGCACCTCAAATGAGACAAACATGGATTCAAGCGATGATCTTCATT
259 TTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATT
* *
3323020 CATTTTGTGAATAGGAACTATAAACACATTCTCCTTATT
324 CATTTTGTGATTAGGCACTATAAACACATTCTCCTTATT
3323059 TCGTTAAACC
Statistics
Matches: 8645, Mismatches: 1523, Indels: 362
0.82 0.14 0.03
Matches are distributed among these distances:
469 9 0.00
470 373 0.04
471 17 0.00
472 6 0.00
473 43 0.00
474 790 0.09
475 1973 0.23
476 3782 0.44
477 1267 0.15
478 346 0.04
479 36 0.00
480 3 0.00
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.37
Consensus pattern (476 bp):
TCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATAAATGACATTGATAC
TTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAAAATCATAGTTTGTCTCTTAAA
TACGACAAACATGAATACTCATACTAATCCCCGTTCTTTTCAGGATTAGGCACCATAAACATAGT
CTTCTCATTAGGATACATCATATTGATGCTTTGGTTTTGAAAGAAAGGCTTTTTTCCCACCAATT
TTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCA
TTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGATAAATGATATTGATGATTTTCTTT
TGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAA
GCATCGATTCTCGTAATAGTC
Found at i:3316165 original size:158 final size:157
Alignment explanation
Indices: 3315531--3316176 Score: 410
Period size: 158 Copynumber: 4.1 Consensus size: 157
3315521 TGTACTTTAG
* *
3315531 ATAAAACAACCATCGATTCTCATAATAATCTCAATTCTTTTCAAGATTGGGAAGCCA-AAACACA
1 ATAAAACAAACATCGATTCTCATAATAATCTCAATTCTTTTCAAGATTGGGAAGCCATAAACAAA
* * * * *
3315595 TTCCCTTCATTAGGATGCATGACATTTAAGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCA
66 TTCCCTTCATTAGGATACATGACATTGAAGCTTTGCT-TTGCAAGAAAAGCTTTT-TTTCCACTA
* *
3315660 TTTTGGATAGAATCAAAGTTTATCTCTTAA
129 TTTTTGATAGAA-CCAAGTTTATCTCTTAA
* * * * * * * *
3315690 ATAAGACAAACAT-GAATACACATACTAATCCCCATTCTTTTCAGGATTAGGCAA--CATAAAC-
1 ATAAAACAAACATCG-ATTCTCATAATAATCTCAATTCTTTTCAAGATT-GGGAAGCCATAAACA
* ** * * * * * *
3315751 ATTGTCTTTTTATTATGATACATCATATTGATGCTTTGACTTTGCAAG-AAAGGTTTTTTTCCAC
64 AAT-TCCCTTCATTAGGATACATGACATTGAAGCTTTG-CTTTGCAAGAAAAGCTTTTTTTCCAC
* * * * * *
3315815 AAATTTTCTTATAG-TCTAAGTTCATGC-CTCAA
127 -TATTTT-TGATAGAACCAAGTTTAT-CTCTTAA
* * ** * * * *
3315847 ATAAAACAAACATTGATTCT-AGTAATGATCTTC-ATTCTTTTTGTA-ATT-AGAAACTATAAAT
1 ATAAAACAAACATCGATTCTCA-TAATAATC-TCAATTC-TTTTCAAGATTGGGAAGCCATAAAC
* * * * * * * * *
3315908 ATAA-TCTCC-TCAATAGGATAAATAATATTGATGATTTTCTTTTGCATGAAAATCTTCTTTTTA
63 A-AATTC-CCTTCATTAGGATACATGACATTGAAGCTTTGC-TTTGCAAGAAAAGCTT-TTTTT-
*** ** *
3315971 CC-CTATTTTCCTTTCAATCAATGTTTATAC-CTTAA
123 CCACTATTTTTGATAGAACCAA-GTTTAT-CTCTTAA
*
3316006 ATAAAAC-AACATCGATTCTCATAATAGTCTCAATTCTTTTCAAGATTGGGAAGCCA-AAACAAA
1 ATAAAACAAACATCGATTCTCATAATAATCTCAATTCTTTTCAAGATTGGGAAGCCATAAACAAA
*
3316069 TTCCCTTCATTAGGATGCATGACATTGAAGCTTTGCTATTGCAAGAAAAGCTTTTCTTTCCACTA
66 TTCCCTTCATTAGGATACATGACATTGAAGCTTTGCT-TTGCAAGAAAAGCTTTT-TTTCCACTA
* *
3316134 TTTTTGATAGAACCATAGTTTGTCTCATAA
129 TTTTTGATAGAACCA-AGTTTATCTCTTAA
* *
3316164 ATAAGACGAACAT
1 ATAAAACAAACAT
3316177 GAATACTCAT
Statistics
Matches: 356, Mismatches: 96, Indels: 70
0.68 0.18 0.13
Matches are distributed among these distances:
155 2 0.01
156 2 0.01
157 101 0.28
158 131 0.37
159 113 0.32
160 7 0.02
ACGTcount: A:0.34, C:0.18, G:0.11, T:0.36
Consensus pattern (157 bp):
ATAAAACAAACATCGATTCTCATAATAATCTCAATTCTTTTCAAGATTGGGAAGCCATAAACAAA
TTCCCTTCATTAGGATACATGACATTGAAGCTTTGCTTTGCAAGAAAAGCTTTTTTTCCACTATT
TTTGATAGAACCAAGTTTATCTCTTAA
Found at i:3323441 original size:418 final size:419
Alignment explanation
Indices: 3322661--3323472 Score: 1067
Period size: 418 Copynumber: 1.9 Consensus size: 419
3322651 AAAGTTTTTT
3322661 CCTTAAAAAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTAGGAAGCCAAA
1 CCTTAAAAAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTAGGAAGCCAAA
** * *
3322726 ACACATTCCCTTCATTAGGATACTGGACATTGATGCTTTCGTGTGGCAAAAAAAACTTTTCTTTC
66 ACACATTCCCTTCATTAGGATACAAGACATTGAAGCTTTCGTGTCGCAAAAAAAACTTTTCTTTC
** * * * * *
3322791 TGCCATTTTTGAAAGAATCATAGTTTATCTCTTAAATATGACAAACATGAATACTCATGCTAATC
131 CACCATTTTTGAAAGAATCAAAGTTTATCTCTTAAATAAGACAAACACGAATAATCATACTAATC
* * * *
3322856 CCCGTTCTTTTTAAGATTAAGCACCATAAACACAATATTCTCATTAGGATACATCATATTGATGT
196 CCCATTCTTTTCAAGATTAAGCAACATAAACACAATATTCTCATTAGGATACATCATATTGATGC
* ** *
3322921 TTTTGTTTTGCACGAAAAGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGATCGCACCTCAAAT
261 TTTGGTTTCACAAGAAAAGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGATCGCACCTCAAAT
** *
3322986 GAGACAAACATGGATTCAAGCGATGATCTTCATTCATTTTGTGAATAGGA-ACTATAAACACATT
326 GAGACAAACATAAATTCAAGCAATGATCTTCATTCATTTTGTGAATA-GACACTATAAACACATT
3323050 CTCCTTATTTCGTTAAACCCAAAGTTCATC
390 CTCCTTATTTCGTTAAACCCAAAGTTCATC
* * * * *
3323080 CCTTAAATAAGACATGCCTC-ATTTCTCGTAACTA-TCTCCATTCTTTTCAAGATTAGGAAGCTA
1 CCTTAAAAAAGACAAGCATCGA-TTCTCATAAC-AGTCTCCATTCTTTTCAAGATTAGGAAGCCA
* * * * *
3323143 AAATACATTCCCTTCATTAGGATGCAAGACATTGAAGCTTTGGTGTCGCAAGAAAAGCTTTTCTT
64 AAACACATTCCCTTCATTAGGATACAAGACATTGAAGCTTTCGTGTCGCAAAAAAAACTTTTCTT
** *
3323208 TCCACCATTTTTTGCTAGAATCAAAGTTTATCTC-TAAATAAGATAAACACGAATAATCATACTA
129 TCCACCA-TTTTTGAAAGAATCAAAGTTTATCTCTTAAATAAGACAAACACGAATAATCATACTA
* * ** * * * *
3323272 AT-CCCATTCTTTTCAGGATTAGGCAACATAAACGTAGTCTTCTCATTATGATACATCATTTTGA
193 ATCCCCATTCTTTTCAAGATTAAGCAACATAAACACAATATTCTCATTAGGATACATCATATTGA
* * * * **
3323336 TGCTTTGGTTTCACAAGAAAAGCTTTTTTCTCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCA
258 TGCTTTGGTTTCACAAGAAAAGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGATCGCACCTCA
* * * * *
3323401 AATGAGATAAACATAAATTCTAGTAATGATCTTCATTCATTTTGTGATTATACACTATAAACACA
323 AATGAGACAAACATAAATTCAAGCAATGATCTTCATTCATTTTGTGAATAGACACTATAAACACA
3323466 TTCTCCT
388 TTCTCCT
3323473 CATTAGGATA
Statistics
Matches: 335, Mismatches: 54, Indels: 9
0.84 0.14 0.02
Matches are distributed among these distances:
417 1 0.00
418 168 0.50
419 142 0.42
420 24 0.07
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (419 bp):
CCTTAAAAAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTAGGAAGCCAAA
ACACATTCCCTTCATTAGGATACAAGACATTGAAGCTTTCGTGTCGCAAAAAAAACTTTTCTTTC
CACCATTTTTGAAAGAATCAAAGTTTATCTCTTAAATAAGACAAACACGAATAATCATACTAATC
CCCATTCTTTTCAAGATTAAGCAACATAAACACAATATTCTCATTAGGATACATCATATTGATGC
TTTGGTTTCACAAGAAAAGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGATCGCACCTCAAAT
GAGACAAACATAAATTCAAGCAATGATCTTCATTCATTTTGTGAATAGACACTATAAACACATTC
TCCTTATTTCGTTAAACCCAAAGTTCATC
Found at i:3325687 original size:476 final size:473
Alignment explanation
Indices: 3323069--3327427 Score: 4311
Period size: 476 Copynumber: 9.2 Consensus size: 473
3323059 TCGTTAAACC
* *
3323069 CAAAGTTCATCCCTTAAATAAGACATGCC-TC-ATTTCTCG-TAACTA-TCTCCATTCTTTTCAA
1 CAAAGTTCATACCTTAAATAAGACA-ACCATCGA-TTCTCGATAA-TAGTCTCCATTCTTTTCAA
* * * *
3323130 GATTAGGAAGCTAAAATACATTCCCTTCATTAGGATGCAAGACATTGAAGCTTTGGTGTCGCAAG
63 GATTGGGAAGCCAAAACACATTCCCTTCATTAGGATGCAAGACATTGAAGCTTTGGTGTCGGAAG
* * * * * *
3323195 AAAAGCTTTTCTTTCCACCATTTTTTGCTAGAATCAAAGTTTATCTC-TAAATAAGATAAACACG
128 AAAAGCTTTTCTTTCCACC-GTTTTTGATAGAATCATAGTTTATCTCTTAAATAAAACAAACATG
* * * *
3323259 AATAATCATACTAATCCC-ATTCTTTTCAGGATTAGGCAACATAAACGTAGTCTTCTCATTATGA
192 AATACTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGA
* * * *
3323323 TACATCATTTTGATGCTTTGGTTTCACAAGAAAAGCTTTTTTCTCACCAATTTTTGTAAAGTCTA
257 TACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTA
* * * ** **
3323388 AGTTTGTGCCTCAAATGAGATAAACATAAATTCTAGTAATGATCTTCATTCATTTTGTGATTATA
322 AGATCGTGCCTCAAATGAGA-CAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGG
* * * *
3323453 CACTATAAACACATTCTCCTCATTAGGATAAATGATATTAATGATTTTCTTTTACATGGAAATCT
386 CACTATAAACACATTCTCCTCTTTAAGATAAATGATATT-GTGATTTTCTTTTGCATGGAAATCT
*
3323518 TTT-CTTTACCCTATTTTCCTTAAAAT
450 TTTCCTAT-CCC-A-TTTCCTTAAAAT
* * * * * * * *
3323544 CAAAGTTCATCCCCTAAATAAGATAAGCATCGATTC-CCATAACAGTCACCATTCTATTCAAGAT
1 CAAAGTTCATACCTTAAATAAGACAACCATCGATTCTCGATAATAGTCTCCATTCTTTTCAAGAT
* * * * *
3323608 TTGGAAGCCAAAACGCATTCCCCTCTTTAGGAT--AATTGACATTGATA-CTTTGGTGTCGCAAG
66 TGGGAAGCCAAAACACATTCCCTTCATTAGGATGCAA--GACATTGA-AGCTTTGGTGTCGGAAG
* * * * * *
3323670 AAAAGCTTTTTTTTCCACCGATTTTGAAAAAATCATAGTTTATCTCTTAAACATGAA-AAACATG
128 AAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCATAGTTTATCTCTTAAATA-AAACAAACATG
* * * *
3323734 AATACTCACACTAATCCCTGTTCTTTTCAGGATTAGGCACCATAAATATAGTCTTCTCATTCGGA
192 AATACTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGA
* * *
3323799 TATATCATATTGATGCTTTGCTTTCGCAAGAAAGGCATTTTTT-CCACCAATTTTTGTAAAGTCC
257 TACATCATATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTTTTCCCACCAATTTTTGTAAAGTCT
* * *
3323863 AAGATCGTGCCTAAAATGACACAACCATTTGATTCTAGTAATGATCTTCATTCATTTTGTGATTA
321 AAGATCGTGCCTCAAATGAGACAA-CA-TGGATTCTAGTAATGATCTTCATTCATTTTGTGATTA
* * **
3323928 GGCACTACAAACATATTCTCCT-TAGACAGATAAATGATATTGATGATTTTCTTTTGCATGGAAA
384 GGCACTATAAACACATTCTCCTCTTTA-AGATAAATGATATTG-TGATTTTCTTTTGCATGGAAA
* *
3323992 TCTTTTCTTTACCCCATTTTCCTTAAAAT
447 TCTTTTC-CTATCCCA-TTTCCTTAAAAT
* * * * *
3324021 CAAAGTTCATTCCTTAAATAAGACAAGCATTGATTCTC-ATAATAGCCTCCATTCTTGTCAAGAT
1 CAAAGTTCATACCTTAAATAAGACAACCATCGATTCTCGATAATAGTCTCCATTCTTTTCAAGAT
* * * ** * *
3324085 TAGGAAGCCAAAACACTTTCCCTTCATTAGGATACTTGACATTGATGCTTTGGTG-AGGCAAGAA
66 TGGGAAGCCAAAACACATTCCCTTCATTAGGATGCAAGACATTGAAGCTTTGGTGTCGG-AAGAA
**** * **
3324149 AAGCTTTTCTTTTTGTCGTTTTTGATAGAATCATAGTTTGTCTCTTAAATACGACAAACATGAAT
130 AAGCTTTTCTTTCCACCGTTTTTGATAGAATCATAGTTTATCTCTTAAATAAAACAAACATGAAT
* *
3324214 ACTCATACTAATCCCTGTTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATAC
195 ACTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATAC
*
3324279 ATCATATTGATGTTTTGGTTTTC-CAAGAAAGGCTTTTTTTCCCACCAATTTTTGTAAAGTCTAA
260 ATCATATTGATGCTTTGG-TTTCGCAAGAAAGGC-TTTTTTCCCACCAATTTTTGTAAAGTCTAA
* * * * * **
3324343 TATCGTACCTCAAATGCGACATACATGGATTCAAGTAATGATCTTCATTCATTTTGTGAATAGAA
323 GATCGTGCCTCAAATGAGACA-ACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGC
* ** * * * * *
3324408 ACTGTGGACACATTCTCCTCCTCAAGAAAAATGATATTGTCGATTTTCTTTTGCACGAAAATCTT
387 ACTATAAACACATTCTCCTCTTTAAGATAAATGATATTGT-GATTTTCTTTTGCATGGAAATCTT
* *
3324473 TTCCATATCGCATTTCCATTCAAAT
451 TTCC-TATCCCATTTCC-TTAAAAT
* * *
3324498 CAATGTTCATACCTTGAATAAGACAACCATCGATTCTCGA-AATAGTCTCCGTTCTTTTCAAGAT
1 CAAAGTTCATACCTTAAATAAGACAACCATCGATTCTCGATAATAGTCTCCATTCTTTTCAAGAT
* * * * ** *
3324562 GGGGAAGTCGAAAA-AAAGTCCCTTCATTAGGATGCAACTCATTGAAGCTTTGGTGTCGGAAGCA
66 TGGGAAG-CCAAAACACATTCCCTTCATTAGGATGCAAGACATTGAAGCTTTGGTGTCGGAAGAA
* * * * **
3324626 AAGCTTTTCTTTCCACTGTTTTTGATAGAATCAGT-GTTTCTCTATTATATAAAATGAACATGAA
130 AAGCTTTTCTTTCCACCGTTTTTGATAGAATCA-TAGTTTATCTCTTAAATAAAACAAACATGAA
* * * *
3324690 TACTCATACTAATCCCTATTTTTTTTCAGGATTAGGCAGCATAAATATAGTCTTCTCATTATGAT
194 TACTCATACTAATCCCTA-TTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGAT
* * * * * *
3324755 ACATTATATTAATGCTTTGGTTCCACAAGAAAGG-GTTTTTCCCACCAATTTTCT-TGAAGTC-A
258 ACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTT-TGTAAAGTCTA
* * * * * * * *
3324817 TAGTTCGTGCCTCAACTGAGATGAACATGGATTCAATTAATGATTTTCATTCATTTTGTGGTTTG
322 -AGATCGTGCCTCAAATGAGA-CAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAG
** * * * *
3324882 GCACTATAAACACATTCTCCT-TAGATGGATAAATGATATTGAAGATTTTCTTCTGCATGAAAAT
385 GCACTATAAACACATTCTCCTCTTTA-AGATAAATGATATTG-TGATTTTCTTTTGCATGGAAAT
* *
3324946 CTTTT-CTTTGCCCTATTTCCTAAAAAT
448 CTTTTCCTAT-CCC-ATTTCCTTAAAAT
* * * * * * **
3324973 CAAAATTCATCCCTTAAATAAAACAAGCATCGATTCCCGA-AACAGTCTCCATTCAATTCAAGAT
1 CAAAGTTCATACCTTAAATAAGACAACCATCGATTCTCGATAATAGTCTCCATTCTTTTCAAGAT
** * * * * *
3325037 TGGGAAGCCAAAATGCATTCCCTTCTTTAGGAT-AAATGACATTGACA-TTTTGGTGCCGTAAGA
66 TGGGAAGCCAAAACACATTCCCTTCATTAGGATGCAA-GACATTGA-AGCTTTGGTGTCGGAAGA
* * * * **
3325100 AAAGCTTTTCTTTCCACTGATTTTGATAAAATCATAATTTATCTCTTAAATACGACAAACATGAA
129 AAAGCTTTTCTTTCCACCGTTTTTGATAGAATCATAGTTTATCTCTTAAATAAAACAAACATGAA
* *
3325165 TACTCACACTAATCCCTATTCTTTTCAGGATTAGGCACCGTAAACATAGTCTTCTCATTAGGATA
194 TACTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATA
* * * ** *
3325230 CATCATATTGATGCTTTGGTTTTGCAAGACAGGCTTTTTTCCCCCCAATTTAGGTAAAGTCCAAG
259 CATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAG
* * * * **
3325295 ATCATGCCTCAAATAAGACATACATGGATTCAAGTAATGATCTTCATTCATTTTGTGAATAGAAA
324 ATCGTGCCTCAAATGAGACA-ACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCA
* ** * * *
3325360 CTGTGGACACATTCTCCTCTTTAAGAAAAATGATATTGTCGATTTTCTTTTGCACGAAAATCTTT
388 CTATAAACACATTCTCCTCTTTAAGATAAATGATATTGT-GATTTTCTTTTGCATGGAAATCTTT
* * *
3325425 TCCACATCGCATTTCCATTCAAAT
452 TCC-TATCCCATTTCC-TTAAAAT
* *
3325449 CAATGTTCATACCTTGAATAAGACAACCATCGATTCTCGA-AATAGTCTCCATTCTTTTCAAGAT
1 CAAAGTTCATACCTTAAATAAGACAACCATCGATTCTCGATAATAGTCTCCATTCTTTTCAAGAT
* * * * * ** * * *
3325513 GGGGAAGTCGAAAA-AAAGTCCCTTCTTTAGGATGCAACCCATTAAAGCTTTAGTGTCGGAAGCA
66 TGGGAAG-CCAAAACACATTCCCTTCATTAGGATGCAAGACATTGAAGCTTTGGTGTCGGAAGAA
* * * **
3325577 AAGCTTTTCTTTCCACCGTTTTTGATAGAATCAGT-GTTTGTCTTTTATATAAAATGAACATGAA
130 AAGCTTTTCTTTCCACCGTTTTTGATAGAATCA-TAGTTTATCTCTTAAATAAAACAAACATGAA
* * * * * * *
3325641 TACTCATACTAATCCCTGTTTTTTTCAAGATTAAGTAGCATAAACATAGTCTTCTCATTATGATA
194 TACTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATA
* * * *
3325706 CAACATATTGATGCTTTAGATTCGCAAGAAAGGCTTTTTTCCCACCAATTTTCT-TAAAATCTAA
259 CATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTT-TGTAAAGTCTAA
* * *
3325770 GTTCGTGCCTCAAATGAGATGAACATGGATTCTAGTAATGATTTTCATTCATTTTGTGATTAGGC
323 GATCGTGCCTCAAATGAGA-CAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGC
* *
3325835 ACTATAAACACATTGTCCT-TTTAAGGATAAATGATATTGATGA-------TT--AT-GAAATAT
387 ACTATAAACACATTCTCCTCTTTAA-GATAAATGATATTG-TGATTTTCTTTTGCATGGAAATCT
* ** * **
3325889 TTTCATCGCCCTATTTTCGTTAAAGC
450 TTTCCTATCCC-A-TTTCCTTAAAAT
* * ** *
3325915 CAAAGTTTATCCCTTAAATAAGACAAGCC-TCCTTTCTC-ATAACTA-TCTCCATTCTATTCAAG
1 CAAAGTTCATACCTTAAATAAGACAA-CCATCGATTCTCGATAA-TAGTCTCCATTCTTTTCAAG
* * ** * * *
3325977 ATTTGGAAGCCGAAATGCATTCCCTTCTTTAGGAT-AAATGACATTGATA-CTTTGGTGTCGCAA
64 ATTGGGAAGCCAAAACACATTCCCTTCATTAGGATGCAA-GACATTGA-AGCTTTGGTGTCGGAA
*** * * *
3326040 GAAAAGC-TTTCTTTTCCACTAATTTTGAAAAAATCATAGTTTATCTCTTAAACACAAA-AAACA
127 GAAAAGCTTTTC-TTTCCACCGTTTTTGATAGAATCATAGTTTATCTCTTAAATA-AAACAAACA
* * * * *
3326103 TGAATACTCACACTAATCCCCATTCTTTTCTA-GATTAGGCACCATAAATATAGTCTTTTCATTC
190 TGAATACTCATACTAATCCCTATTCTTTTC-AGGATTAGGCACCATAAACATAGTCTTCTCATTA
* **
3326167 GGATACATCATATTGATGCTTTGCTTTCGCAAGAAAGGCTTTTTTCCCATAAATTTTTGTAAAGT
254 GGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGT
* * * * *
3326232 CCAAGATCATGCCTTAAATGAGACAACCATTTGAATCTAGTAATGATCTTCATTCATTTTGTGAT
319 CTAAGATCGTGCCTCAAATGAGACAA-CA-TGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
* **
3326297 TAGGCACTATAAACATATTCTCCTC-AGATAGATAAATGATATTGATGATTTTCTTTTGCATGGA
382 TAGGCACTATAAACACATTCTCCTCTTTA-AGATAAATGATATTG-TGATTTTCTTTTGCATGGA
* *
3326361 AATCTTTTCTTTACCCCATTTTCCTTAAAAT
445 AATCTTTTC-CTATCCCA-TTTCCTTAAAAT
* ** *
3326392 CAAAGTTCATTCCTTAAAT-AGACAAGTATCGATTCTC-ATAATAGTCTCCATTCTTGTCAAGAT
1 CAAAGTTCATACCTTAAATAAGACAACCATCGATTCTCGATAATAGTCTCCATTCTTTTCAAGAT
* * * ** *
3326455 TGGGAACCCAAAACACTTTCCCTTCATTAGGATACTTGACATTGATGCTTTGGTGT-GGCAAGAA
66 TGGGAAGCCAAAACACATTCCCTTCATTAGGATGCAAGACATTGAAGCTTTGGTGTCGG-AAGAA
* ** * ** *
3326519 AAGCTTTTCTTTTCGTCGTTTTTGATAGAATCATAATTTATCTCTTAAATATGACAAACAAGAAT
130 AAGCTTTTCTTTCCACCGTTTTTGATAGAATCATAGTTTATCTCTTAAATAAAACAAACATGAAT
** * * * *
3326584 ACTCATACTAATCCCCGTTTTTTTCATGATTAAGCACCATAAACATAGTCTTCTCGTTAGGATAC
195 ACTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATAC
* * * *
3326649 TTCATATTGATGTTTTGGTTTCGCAAGAAAAGCTCTTTTCCCACCAATTTTTGTAAAGTCTAAGA
260 ATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGA
* * * *
3326714 TCGTGCCTCAAATGAGACATACATGGATTCAAGTAATGATCATCATTCATTTTGTGAATAGGAAC
325 TCGTGCCTCAAATGAGACA-ACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCAC
* * * * *
3326779 TGT-AACACATTCTCCTCTTTAGGATAAAT-ATATTGGCGATTTTTTTTTGCACGGAAATCTTTT
389 TATAAACACATTCTCCTCTTTAAGATAAATGATATT-GTGATTTTCTTTTGCATGGAAATCTTTT
* *
3326842 CTCTGTCGCATTTCCCTTAAAAT
453 C-CTATCCCATTT-CCTTAAAAT
* * *
3326865 CAATGTTCATACCTTGAATAAGACAACCATCGATTCTCGA-AATTGTCTCCATTCTTTTCAAGAT
1 CAAAGTTCATACCTTAAATAAGACAACCATCGATTCTCGATAATAGTCTCCATTCTTTTCAAGAT
* * * * * *
3326929 GGGGAAGTCGAAAA-AAATTCCCTTCATTAGGATGCATGTCATTGAAGCTTTGGTGTCGGAAGCA
66 TGGGAAG-CCAAAACACATTCCCTTCATTAGGATGCAAGACATTGAAGCTTTGGTGTCGGAAGAA
* * * * * *
3326993 AAGTTTTTCTTTTCACCTTTTTTGATAGAATCAGT-GTTTGTCTTTTATATAAAACAAACATGAA
130 AAGCTTTTCTTTCCACCGTTTTTGATAGAATCA-TAGTTTATCTCTTAAATAAAACAAACATGAA
* * * *
3327057 TACTCATACTAATCCCTATTGTTTTCAGGATTAAGCAACATAAACATAGTCTTCTCATT-GTCAT
194 TACTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAG-GAT
* * * ** *
3327121 ACATTATATTGATGCTTTAGATTCATAAGAAAGGCTTTTTTCCTACCAATTTTCT-TAAAGTCTA
258 ACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTT-TGTAAAGTCTA
* * * * * *
3327185 AGTTTGTGCCTCAAATGAGATGAACATGGATTCTAGTAATGATTTTCATTGATTTTGTAATTAGG
322 AGATCGTGCCTCAAATGAGA-CAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGG
* * * * *
3327250 CACTATAAACACATTGTCCT-TTTAAGGATAAATGATATTGATGATTTTATTTTGCTTTGAAA-A
386 CACTATAAACACATTCTCCTCTTTAA-GATAAATGATATTG-TGATTTTCTTTTGCATGGAAATC
** **
3327313 TTTT-C-ATCGCCATATTTTTGTTAAAGC
449 TTTTCCTATC-CC--A-TTTCCTTAAAAT
* * * * * * *
3327340 CAAAGTTTATCCCTTAAACAAGGCAAGCCTTC-TTTCTC-ATAACTA-TCTCCATTCTATTCAAG
1 CAAAGTTCATACCTTAAATAAGACAA-CCATCGATTCTCGATAA-TAGTCTCCATTCTTTTCAAG
* *
3327402 ATTTGGAAGCCAAAACGCATTCCCTT
64 ATTGGGAAGCCAAAACACATTCCCTT
3327428 TGTAGACACC
Statistics
Matches: 3181, Mismatches: 579, Indels: 248
0.79 0.14 0.06
Matches are distributed among these distances:
465 17 0.01
466 270 0.08
467 87 0.03
468 1 0.00
469 2 0.00
472 5 0.00
473 65 0.02
474 436 0.14
475 598 0.19
476 892 0.28
477 677 0.21
478 129 0.04
479 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (473 bp):
CAAAGTTCATACCTTAAATAAGACAACCATCGATTCTCGATAATAGTCTCCATTCTTTTCAAGAT
TGGGAAGCCAAAACACATTCCCTTCATTAGGATGCAAGACATTGAAGCTTTGGTGTCGGAAGAAA
AGCTTTTCTTTCCACCGTTTTTGATAGAATCATAGTTTATCTCTTAAATAAAACAAACATGAATA
CTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACA
TCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGAT
CGTGCCTCAAATGAGACAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTA
TAAACACATTCTCCTCTTTAAGATAAATGATATTGTGATTTTCTTTTGCATGGAAATCTTTTCCT
ATCCCATTTCCTTAAAAT
Found at i:3327678 original size:13 final size:13
Alignment explanation
Indices: 3327660--3327684 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3327650 TTCAACAAAT
3327660 TGTATCGATACAA
1 TGTATCGATACAA
3327673 TGTATCGATACA
1 TGTATCGATACA
3327685 TAAGTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3333021 original size:21 final size:22
Alignment explanation
Indices: 3332985--3333028 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 22
3332975 AATTTTGAAT
*
3332985 TTCACTAATTTGTATCGATACA
1 TTCACTAATATGTATCGATACA
3333007 TTCACTAA-ATGTATCGATACA
1 TTCACTAATATGTATCGATACA
3333028 T
1 T
3333029 AAGTTGTATC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 13 0.62
22 8 0.38
ACGTcount: A:0.34, C:0.18, G:0.09, T:0.39
Consensus pattern (22 bp):
TTCACTAATATGTATCGATACA
Found at i:3335534 original size:51 final size:51
Alignment explanation
Indices: 3335413--3335545 Score: 171
Period size: 52 Copynumber: 2.6 Consensus size: 51
3335403 TAAGTTTCTC
* * *
3335413 AATTTTTCATAATCGGGGGTATTCCAACCCCGATTTTATTTCTAAAAACACT
1 AATTTTTCACAATCGGGGATACTCCAACCCCGATTTTATTTC-AAAAACACT
* *
3335465 AATTTTTCACAATCGGGGATACTCCAACCCCGGTTTTATTTGC-AAATCA-T
1 AATTTTTCACAATCGGGGATACTCCAACCCCGATTTTATTT-CAAAAACACT
*
3335515 CGATTTTTCACAATCGGGGATACTCCAACCC
1 -AATTTTTCACAATCGGGGATACTCCAACCC
3335546 TGTTACTATC
Statistics
Matches: 73, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
50 1 0.01
51 34 0.47
52 37 0.51
53 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.33
Consensus pattern (51 bp):
AATTTTTCACAATCGGGGATACTCCAACCCCGATTTTATTTCAAAAACACT
Found at i:3339343 original size:21 final size:22
Alignment explanation
Indices: 3339318--3339373 Score: 64
Period size: 20 Copynumber: 2.6 Consensus size: 22
3339308 GATGATGATG
3339318 AAAAAGTCAAAAGTAAACACA-A
1 AAAAAGTCAAAAG-AAACACACA
*
3339340 AAAAA--CAAAAAAAACACACA
1 AAAAAGTCAAAAGAAACACACA
3339360 AAAAAGTGCAAAAG
1 AAAAAGT-CAAAAG
3339374 CAAAATCAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
19 7 0.25
20 11 0.39
22 5 0.18
23 5 0.18
ACGTcount: A:0.71, C:0.14, G:0.09, T:0.05
Consensus pattern (22 bp):
AAAAAGTCAAAAGAAACACACA
Found at i:3339352 original size:9 final size:10
Alignment explanation
Indices: 3339332--3339364 Score: 50
Period size: 9 Copynumber: 3.3 Consensus size: 10
3339322 AGTCAAAAGT
3339332 AAACACAAAA
1 AAACACAAAA
3339342 AAACA-AAAA
1 AAACACAAAA
3339351 AAACACACAAA
1 AAACACA-AAA
3339362 AAA
1 AAA
3339365 GTGCAAAAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 9 0.43
10 6 0.29
11 6 0.29
ACGTcount: A:0.82, C:0.18, G:0.00, T:0.00
Consensus pattern (10 bp):
AAACACAAAA
Found at i:3340633 original size:31 final size:33
Alignment explanation
Indices: 3340590--3340800 Score: 221
Period size: 34 Copynumber: 6.6 Consensus size: 33
3340580 ATACCTTATT
3340590 AAAGTCCACGACTCAGTGGCAATCTC-TTC-TC
1 AAAGTCCACGACTCAGTGGCAATCTCTTTCTTC
* *
3340621 AAAGCCCACGACTCAGTGG-GAT-T-TTTCTTC
1 AAAGTCCACGACTCAGTGGCAATCTCTTTCTTC
*
3340651 AAAGTCCACGACTTAGTGGC-ATCTCTTTCTT-
1 AAAGTCCACGACTCAGTGGCAATCTCTTTCTTC
3340682 AAAGTCCACGACTCAGTGGCAATCTCTTTCCTTC
1 AAAGTCCACGACTCAGTGGCAATCTCTTT-CTTC
* *
3340716 AAAGTCCACAACTCAGTGGC-ATCCCTTT-TTCC
1 AAAGTCCACGACTCAGTGGCAATCTCTTTCTT-C
* *
3340748 TGTAAGTCCACAACTCAGTGGC-ATCTC-TT-TTC
1 --AAAGTCCACGACTCAGTGGCAATCTCTTTCTTC
* *
3340780 TAAGTCCACGACTCTGTGGCA
1 AAAGTCCACGACTCAGTGGCA
3340801 CCTTTTTCTT
Statistics
Matches: 157, Mismatches: 11, Indels: 24
0.82 0.06 0.12
Matches are distributed among these distances:
29 4 0.03
30 41 0.26
31 40 0.25
32 16 0.10
33 14 0.09
34 42 0.27
ACGTcount: A:0.24, C:0.30, G:0.17, T:0.30
Consensus pattern (33 bp):
AAAGTCCACGACTCAGTGGCAATCTCTTTCTTC
Found at i:3340691 original size:61 final size:62
Alignment explanation
Indices: 3340590--3340810 Score: 225
Period size: 61 Copynumber: 3.5 Consensus size: 62
3340580 ATACCTTATT
* * *
3340590 AAAGTCCACGACTCAGTGGCAATCTC-TTCTCAAAGCCCACGACTCAGTGGGAT-TTTTCTTC
1 AAAGTCCACGACTCAGTGGC-ATCTCTTTCTTAAAGTCCACGACTCAGTGGAATCTTTTCTTC
*
3340651 AAAGTCCACGACTTAGTGGCATCTCTTTCTTAAAGTCCACGACTCAGTGGCAATCTCTTTCCTTC
1 AAAGTCCACGACTCAGTGGCATCTCTTTCTTAAAGTCCACGACTCAGTGG-AATCT-TTT-CTTC
* * * * *
3340716 AAAGTCCACAACTCAGTGGCATCCCTTTTTCCTGT-AAGTCCACAACTCAGTGGCATCTCTT-TT
1 AAAGTCCACGACTCAGTGGCAT--CTCTTT-CT-TAAAGTCCACGACTCAGTGGAATCTTTTCTT
3340779 C
62 C
* * * *
3340780 TAAGTCCACGACTCTGTGGCACCTTTTTCTT
1 AAAGTCCACGACTCAGTGGCATCTCTTTCTT
3340811 TTTAAAGCCC
Statistics
Matches: 137, Mismatches: 14, Indels: 19
0.81 0.08 0.11
Matches are distributed among these distances:
60 6 0.04
61 43 0.31
62 8 0.06
63 1 0.01
64 24 0.18
65 24 0.18
66 2 0.01
67 9 0.07
68 19 0.14
69 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.16, T:0.32
Consensus pattern (62 bp):
AAAGTCCACGACTCAGTGGCATCTCTTTCTTAAAGTCCACGACTCAGTGGAATCTTTTCTTC
Found at i:3340730 original size:34 final size:32
Alignment explanation
Indices: 3340590--3340810 Score: 233
Period size: 30 Copynumber: 7.0 Consensus size: 32
3340580 ATACCTTATT
3340590 AAAGTCCACGACTCAGTGGCAATCTC-TTC-TC
1 AAAGTCCACGACTCAGTGGC-ATCTCTTTCTTC
* *
3340621 AAAGCCCACGACTCAGTGGGAT-T-TTTCTTC
1 AAAGTCCACGACTCAGTGGCATCTCTTTCTTC
*
3340651 AAAGTCCACGACTTAGTGGCATCTCTTTCTT-
1 AAAGTCCACGACTCAGTGGCATCTCTTTCTTC
3340682 AAAGTCCACGACTCAGTGGCAATCTCTTTCCTTC
1 AAAGTCCACGACTCAGTGGC-ATCTCTTT-CTTC
* *
3340716 AAAGTCCACAACTCAGTGGCATCCCTTT-TTCC
1 AAAGTCCACGACTCAGTGGCATCTCTTTCTT-C
* *
3340748 TGTAAGTCCACAACTCAGTGGCATCTC-TT-TTC
1 --AAAGTCCACGACTCAGTGGCATCTCTTTCTTC
* * * *
3340780 TAAGTCCACGACTCTGTGGCACCTTTTTCTT
1 AAAGTCCACGACTCAGTGGCATCTCTTTCTT
3340811 TTTAAAGCCC
Statistics
Matches: 164, Mismatches: 14, Indels: 23
0.82 0.07 0.11
Matches are distributed among these distances:
29 4 0.02
30 44 0.27
31 42 0.26
32 18 0.11
33 14 0.09
34 42 0.26
ACGTcount: A:0.23, C:0.30, G:0.16, T:0.32
Consensus pattern (32 bp):
AAAGTCCACGACTCAGTGGCATCTCTTTCTTC
Found at i:3340811 original size:34 final size:33
Alignment explanation
Indices: 3340717--3340875 Score: 130
Period size: 34 Copynumber: 4.8 Consensus size: 33
3340707 CTTTCCTTCA
* * *
3340717 AAGTCCACAACTCAGTGGCATCCCTTTTTC-CTGT
1 AAGTCCACAACTCTGTGGCA--CCTTTTTCTTTTT
* *
3340751 AAGTCCACAACTCAGTGGCA----TCTCTTTTCT
1 AAGTCCACAACTCTGTGGCACCTTTTTCTTTT-T
*
3340781 AAGTCCACGACTCTGTGGCACCTTTTTCTTTTT
1 AAGTCCACAACTCTGTGGCACCTTTTTCTTTTT
* * *
3340814 AAAGCCCACAACTCCGTGGCACTCTATTTTCCCTTTT
1 -AAGTCCACAACTCTGTGGCAC-CT-TTTT-CTTTTT
*
3340851 AAGTCCACAACTCTGTGGCATCTTT
1 AAGTCCACAACTCTGTGGCACCTTT
3340876 CTCCTTTTCA
Statistics
Matches: 102, Mismatches: 13, Indels: 20
0.76 0.10 0.15
Matches are distributed among these distances:
28 3 0.03
29 1 0.01
30 19 0.19
33 1 0.01
34 47 0.46
35 4 0.04
36 22 0.22
37 5 0.05
ACGTcount: A:0.21, C:0.31, G:0.14, T:0.35
Consensus pattern (33 bp):
AAGTCCACAACTCTGTGGCACCTTTTTCTTTTT
Found at i:3340827 original size:98 final size:101
Alignment explanation
Indices: 3340588--3340873 Score: 287
Period size: 98 Copynumber: 3.0 Consensus size: 101
3340578 AAATACCTTA
* * *
3340588 TTAAAGTCCACGACTCAGTGGCAATCTC-TT-C-TCAAAGCCCACGACTCAGTGGGA---T-TTT
1 TTAAAGTCCACGACTCAGTGGCAACCTCTTTCCTTCAAAGCCCACAACTCAGTGGCACCCTATTT
** * *
3340646 T--CTTCAAAGTCCACGACTTAGTGGCATCTCTTTC
66 TCCCTTGTAAGTCCACAACTCAGTGGCATCTCTTTC
* *
3340680 TTAAAGTCCACGACTCAGTGGCAATCTCTTTCCTTCAAAGTCCACAACTCAGTGGCATCCCT-TT
1 TTAAAGTCCACGACTCAGTGGCAACCTCTTTCCTTCAAAGCCCACAACTCAGTGGCA-CCCTATT
3340744 TT-CC-TGTAAGTCCACAACTCAGTGGCATCTCTTT-
65 TTCCCTTGTAAGTCCACAACTCAGTGGCATCTCTTTC
* * * * * *
3340778 TCT-AAGTCCACGACTCTGTGGC-ACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTAT
1 T-TAAAGTCCACGACTCAGTGGCAACCTCTTTC-CTTCAAAGCCCACAACTCAGTGGCACCCTAT
* *
3340841 TTTCCCTTTTAAGTCCACAACTCTGTGGCATCT
64 TTTCCCTTGTAAGTCCACAACTCAGTGGCATCT
3340874 TTCTCCTTTT
Statistics
Matches: 164, Mismatches: 17, Indels: 18
0.82 0.09 0.09
Matches are distributed among these distances:
92 28 0.17
93 2 0.01
94 1 0.01
95 20 0.12
97 10 0.06
98 44 0.27
99 34 0.21
100 25 0.15
ACGTcount: A:0.22, C:0.30, G:0.15, T:0.33
Consensus pattern (101 bp):
TTAAAGTCCACGACTCAGTGGCAACCTCTTTCCTTCAAAGCCCACAACTCAGTGGCACCCTATTT
TCCCTTGTAAGTCCACAACTCAGTGGCATCTCTTTC
Found at i:3340895 original size:36 final size:33
Alignment explanation
Indices: 3340680--3340896 Score: 115
Period size: 34 Copynumber: 6.4 Consensus size: 33
3340670 CATCTCTTTC
* * *
3340680 TTAAAGTCCACGACTCAGTGGCAATCTCTTTCC-T
1 TTAAAGCCCACAACTCTGTGGC-ATCT-TTTCCTT
* * *
3340714 TCAAAGTCCACAACTCAGTGGCATCCCTTTTTCC-T
1 TTAAAGCCCACAACTCTGTGGCAT--C-TTTTCCTT
* * * *
3340749 GT-AAGTCCACAACTCAGTGGCATCTCTT--TT
1 TTAAAGCCCACAACTCTGTGGCATCTTTTCCTT
* * * * *
3340779 CT-AAGTCCACGACTCTGTGGCACCTTTTTCTTT
1 TTAAAGCCCACAACTCTGTGGCATC-TTTTCCTT
*
3340812 TTAAAGCCCACAACTCCGTGGCACTCTATTTTCCCTT
1 TTAAAGCCCACAACTCTGTGGCA-TC--TTTT-CCTT
*
3340849 TT-AAGTCCACAACTCTGTGGCATCTTTCTCCTT
1 TTAAAGCCCACAACTCTGTGGCATCTTT-TCCTT
3340882 TTCAAAAGCCCACAA
1 TT--AAAGCCCACAA
3340897 TTTAGTGGCA
Statistics
Matches: 148, Mismatches: 20, Indels: 28
0.76 0.10 0.14
Matches are distributed among these distances:
30 21 0.14
31 6 0.04
32 1 0.01
33 14 0.09
34 59 0.40
35 10 0.07
36 32 0.22
37 5 0.03
ACGTcount: A:0.23, C:0.31, G:0.13, T:0.33
Consensus pattern (33 bp):
TTAAAGCCCACAACTCTGTGGCATCTTTTCCTT
Found at i:3341003 original size:49 final size:49
Alignment explanation
Indices: 3340943--3342041 Score: 1183
Period size: 49 Copynumber: 22.9 Consensus size: 49
3340933 GGCATCTTCT
*
3340943 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTGTC
* * * *
3340992 TTTAAGACCAATGTCACTGGCCTTGAATCAACACATTGGCA-C-----C
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTGTC
3341035 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACC-TTGTC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTGTC
* * *
3341083 TTTAAGACCAATGTCGCTAGCCTTGAATCAGCACATTGGCA-C-----C
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTGTC
* *
3341126 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCC-TTGTC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTGTC
* * *
3341174 TTTCAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-C-----C
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTGTC
* * *
3341217 TTTAAGTCCAATATCGCTGGCCTTGAATTAGCATATTGGCGCC-TTGTC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTGTC
* * * *
3341265 TTTAAGACCAATGTCACTGGCCTTGAATCAGCATATTGG-AGCC-TTGTC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCA-CCTTTGTC
* *
3341313 TTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-C-----C
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTGTC
* **
3341356 TTTAA-TCCAATATCGCTGGCCTTGAATCAGCATATTGGTGCC-TTGTC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTGTC
* * *
3341403 TTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGG---C--T-CC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTGTC
**
3341446 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTGTC
* * *
3341495 TTTAAGTCCAATATCGCTGACCTTGAATCAGCATATTGGCGCCTTTGTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTG---TC
* * * *
3341547 TTTAAGTCAAATGTCGCTGGCCTTGAATCAACACATTGGCACCTTTATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTGTC
* ** * * *
3341596 TTTCAGTCCAATATCGCTGGCCTTGAATCAATATATTGGCGCTTTTGTC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTGTC
* ** **
3341645 ATATTTAAGTCCAATGTCGCTAACCTTGAATCAGCACATTGGCACCTTCATC
1 ---TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTGTC
* ** * *
3341697 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGTGTCTTTCTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGG-CACCTT-T-GTC
* * *
3341749 TTTAAGTCAAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTGTC
* * *
3341798 TTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCACTTTTGTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTG---TC
* * **
3341850 TTTAAGTCCAATGTCGCTGACCTTGAATCAGCACATTGGCACCTTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTGTC
**
3341899 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTGTC
* * **
3341948 TTTAAGTCCAATATCACTGGCCTTGAATCAGCACATTGGCACATTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTGTC
* *
3341997 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTT
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTT
3342042 CGTCATCTTT
Statistics
Matches: 895, Mismatches: 114, Indels: 82
0.82 0.10 0.08
Matches are distributed among these distances:
42 30 0.03
43 156 0.17
44 4 0.00
45 1 0.00
46 1 0.00
47 9 0.01
48 187 0.21
49 339 0.38
50 4 0.00
51 3 0.00
52 161 0.18
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (49 bp):
TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTGTC
Found at i:3341036 original size:21 final size:21
Alignment explanation
Indices: 3341012--3341080 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
3341002 ATGTCACTGG
3341012 CCTTGAATCAACACATTGGCA
1 CCTTGAATCAACACATTGGCA
* * **
3341033 CCTTTAAGTCCAATATCGCTGG--
1 CCTTGAA-T-CAACA-CATTGGCA
*
3341055 CCTTGAATCAGCACATTGGCA
1 CCTTGAATCAACACATTGGCA
3341076 CCTTG
1 CCTTG
3341081 TCTTTAAGAC
Statistics
Matches: 34, Mismatches: 9, Indels: 10
0.64 0.17 0.19
Matches are distributed among these distances:
19 4 0.12
20 3 0.09
21 12 0.35
22 7 0.21
23 4 0.12
24 4 0.12
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.28
Consensus pattern (21 bp):
CCTTGAATCAACACATTGGCA
Found at i:3341447 original size:21 final size:21
Alignment explanation
Indices: 3341423--3341490 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
3341413 ATGTCGCTGG
3341423 CCTTGAATCAGCACATTGGCT
1 CCTTGAATCAGCACATTGGCT
* *
3341444 CCTTTAAGTC--CA-ATATCGCT
1 CCTTGAA-TCAGCACAT-TGGCT
*
3341464 GGCCTTGAATCAGCACATTGGCA
1 --CCTTGAATCAGCACATTGGCT
3341487 CCTT
1 CCTT
3341491 CATCTTTAAG
Statistics
Matches: 35, Mismatches: 5, Indels: 14
0.65 0.09 0.26
Matches are distributed among these distances:
19 2 0.06
20 6 0.17
21 12 0.34
22 8 0.23
23 5 0.14
24 2 0.06
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (21 bp):
CCTTGAATCAGCACATTGGCT
Found at i:3341620 original size:101 final size:101
Alignment explanation
Indices: 3341445--3342138 Score: 991
Period size: 101 Copynumber: 6.9 Consensus size: 101
3341435 ACATTGGCTC
*
3341445 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATC
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATC
*
3341510 GCTGACCTTGAATCAGCATATTGGCGCCTTTGTCAT
66 GCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
* * * *
3341546 CTTTAAGTCAAATGTCGCTGGCCTTGAATCAACACATTGGCACCTTTATCTTTCAGTCCAATATC
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATC
** *
3341611 GCTGGCCTTGAATCAATATATTGGCGCTTTTGTCAT
66 GCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
* **
3341647 ATTTAAGTCCAATGTCGCTAACCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATC
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATC
* * *
3341712 GCTGGCCTTGAATCAGCATATTGGTGTCTTTCTCAT
66 GCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
* *
3341748 CTTTAAGTCAAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGTCCAATATC
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATC
* * *
3341813 GTTGGCCTTGAATCAGCATATTGGCACTTTTGTCAT
66 GCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
*
3341849 CTTTAAGTCCAATGTCGCTGACCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATC
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATC
* *
3341914 GCTGGCCTTGAATCAGCACATTGGCACC--T-TCAT
66 GCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
* * *
3341947 CTTTAAGTCCAATATCACTGGCCTTGAATCAGCACATTGGCACATTCATCTTTAAGTCCAATATC
1 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATC
*
3342012 GCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCAT
66 GCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
** * * * * *
3342048 CTTTAAAACCCAATGTCGTTGG-CTTGAATCAGGACATTGGCATTCTTCTCATCTTCAAGTCTAA
1 CTTT-AAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA--CCT-TCATCTTTAAGTCCAA
* * *
3342112 TGTCGCTGACCGTGAATCAGCATATTG
62 TATCGCTGGCCTTGAATCAGCATATTG
3342139 ACATCCTGTT
Statistics
Matches: 528, Mismatches: 58, Indels: 11
0.88 0.10 0.02
Matches are distributed among these distances:
98 91 0.17
99 1 0.00
101 384 0.73
102 12 0.02
103 2 0.00
104 38 0.07
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.33
Consensus pattern (101 bp):
CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATC
GCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
Found at i:3341704 original size:202 final size:197
Alignment explanation
Indices: 3340943--3342138 Score: 1353
Period size: 202 Copynumber: 6.2 Consensus size: 197
3340933 GGCATCTTCT
* *
3340943 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTG--TCTTTAAGACCAATGT
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCC-TTGCATCTTTAAGTCCAATGT
* *
3341006 CACTGGCCTTGAATCAACACATTGGCA-C-----CTTTAAGTCCAATATCGCTGGCCTTGAATCA
65 CGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGTCCAATATCGCTGGCCTTGAATCA
* * * * *
3341065 GCACATTGGCACCTTGT-CTTTAAGACCAATGTCGCTAGCCTTGAATCAGCACATTGGCA----C
130 GCATATTGGCGCTTTGTCCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTC
3341125 --C
195 ATC
* *
3341126 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTG--TCTTTCAGACCAATGTC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTGCATCTTTAAGTCCAATGTC
*
3341189 GCTGGCCTTGAATCAGCACATTGGCA-C-----CTTTAAGTCCAATATCGCTGGCCTTGAATTAG
66 GCTGGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGTCCAATATCGCTGGCCTTGAATCAG
* * * *
3341248 CATATTGGCGCCTTGT-CTTTAAGACCAATGTCACTGGCCTTGAATCAGCATATTGG-AGCCTT-
131 CATATTGGCGCTTTGTCCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-CCTTC
*
3341310 GTC
195 ATC
* * * * *
3341313 TTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATT---G----GCACCTTTAA-TCCAATATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTGCATCTTTAAGTCCAATGTC
* ** * * *
3341370 GCTGGCCTTGAATCAGCATATTGGTGCC-TTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAG
66 GCTGGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGTCCAATATCGCTGGCCTTGAATCAG
* *
3341434 CACATT-G-GC----TCCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCA
131 CATATTGGCGCTTTGTCCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCA
3341493 TC
196 TC
* *
3341495 TTTAAGTCCAATATCGCTGACCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCAAATG
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCC-TTG-CATCTTTAAGTCCAATG
* *
3341560 TCGCTGGCCTTGAATCAACACATTGGCACCTTTATCTTTCAGTCCAATATCGCTGGCCTTGAATC
64 TCGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGTCCAATATCGCTGGCCTTGAATC
** * **
3341625 AATATATTGGCGCTTTTGTCATATTTAAGTCCAATGTCGCTAACCTTGAATCAGCACATTGGCAC
129 AGCATATTGGCGC-TTTGTC--CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCAC
3341690 CTTCATC
191 CTTCATC
* * * *
3341697 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGTGTCTTTCTCATCTTTAAGTCAAATG
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCG-CCTT-GCATCTTTAAGTCCAATG
*
3341762 TCGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGTCCAATATCGTTGGCCTTGAATC
64 TCGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGTCCAATATCGCTGGCCTTGAATC
* *
3341827 AGCATATTGGCACTTTTGTCATCTTTAAGTCCAATGTCGCTGACCTTGAATCAGCACATTGGCAC
129 AGCATATTGGCGC-TTTGTC--CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCAC
3341892 CTTCATC
191 CTTCATC
* * *
3341899 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTT-CATCTTTAAGTCCAATATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTGCATCTTTAAGTCCAATGTC
* * *
3341963 ACTGGCCTTGAATCAGCACATTGGCACATTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAG
66 GCTGGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGTCCAATATCGCTGGCCTTGAATCAG
* ** * *
3342028 CATATTGGCGCCTTCGTCATCTTTAAAACCCAATGTCGTTGG-CTTGAATCAGGACATTGGCATT
131 CATATTGGCG-CTTTGTC--CTTT-AAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA--
*
3342092 CTTCTCATC
190 CCT-TCATC
* * * * *
3342101 TTCAAGTCTAATGTCGCTGACCGTGAATCAGCATATTG
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTG
3342139 ACATCCTGTT
Statistics
Matches: 882, Mismatches: 87, Indels: 69
0.85 0.08 0.07
Matches are distributed among these distances:
180 2 0.00
181 71 0.08
182 168 0.19
183 42 0.05
184 3 0.00
185 2 0.00
186 34 0.04
187 35 0.04
190 1 0.00
191 8 0.01
192 31 0.04
193 35 0.04
194 1 0.00
195 2 0.00
199 117 0.13
200 16 0.02
201 5 0.01
202 308 0.35
203 1 0.00
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (197 bp):
TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTGCATCTTTAAGTCCAATGTC
GCTGGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGTCCAATATCGCTGGCCTTGAATCAG
CATATTGGCGCTTTGTCCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCA
TC
Found at i:3342864 original size:13 final size:13
Alignment explanation
Indices: 3342846--3342870 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3342836 TTGTAAGTTT
3342846 TGTATCGATACAA
1 TGTATCGATACAA
3342859 TGTATCGATACA
1 TGTATCGATACA
3342871 TAAGTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3350452 original size:476 final size:476
Alignment explanation
Indices: 3347020--3353615 Score: 7749
Period size: 476 Copynumber: 13.9 Consensus size: 476
3347010 ACATTGATGA
* *
3347020 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCATAAATAAGATAAGCATCGATTCTC
1 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC
* * * * ** ** * *
3347085 GTAA-TAGTCTCTATTCTTCTCAAGATTGGGATGCTAAAACGTATTCTTTTCATTAGGATAAATA
66 GTAACT-GTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATG
** * * * * *
3347149 ACATTGACACTTTGGTGTCGTAAGAAAAGCTTTTCTTTCTACCGTTTTT-AGTAAAATTAAAGTT
130 ACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGA-TAGAATCAAAGTT
* * *
3347213 TGTCTCTTAAATACGACAAACACGAATACCCATACTAATCCCCATTCTTTTTCAGGATTAGGCAC
194 TGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTC-TTTTCAGGATTAGGCAC
* * * * * * *
3347278 CATAAACATAGCCTTCACAGTAAGATACATCATATTAATTCTTTGGTTTCGCAAGAAAGGATTGT
258 CATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTT-T
* * *
3347343 TTTC-CTCTAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAA
322 TTTCTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAA
* * * * *
3347407 TGATCTTCATTCAATTTGTGATTAGGAACTATAAACACATTATCCTCCTTAGGATAAGTGATATT
387 TGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATT
*
3347472 GACGATTTTCTTTTGCATGGAAATC
452 GATGATTTTCTTTTGCATGGAAATC
** * ** * * *
3347497 TTTTCTTT-ATCTATTTCCCTTAAAATCAATA-TTCAAACCTTGAATAAGGCAACCATCGATTCT
1 TTTTCTTTGCCCTATTTTCCTTAAAATCAA-AGTTCATCCCTTAAATAAGACAAGCATCGATTCT
* * * * * * *
3347560 CGAAAATACTCTTCATTCTTTTCAAGATTAGGAAGCCAAAACAAATTCCCTTCATTTA-GATGCA
65 CGTAACT-GTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCA-TTAGGATACA
* * ** * * * * *
3347624 AGTCATTGAACCTTTGGTGTCGTACGAAAAGCTTTTCTTTCCACTATTTTTTATAGAACCAAAGT
128 TGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGT
* ** * * * * *
3347689 TTGTCTCTTAAATATGACAAGTATGAATACTTATACTAATCTCCGTTCTTTTTAGTATTAGGCAC
193 TTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCAC
* * * *
3347754 AATAAATAAAGTCTTCTTATTAGGATACAT-ATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTT
258 CATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTT
* *
3347818 TTCTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGAATTTTAGTAAT
323 TTCTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAT
* * *
3347883 GATCTTCATTCATTTTGTGATTAGACACTATAAATACATTCT-CTTATTTAGGATAAATGATATT
388 GATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCA-TTAGGATAAATGATATT
*
3347947 GATGATTTACTTTTGCATGGAAATC
452 GATGATTTTCTTTTGCATGGAAATC
* *
3347972 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCACCCCTTAAATAAGATAAGCATC-AGTTCT
1 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGA-TTCT
* * * * * *
3348036 CGTAACAGTCACTACTT-TTTCCATGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACCT
65 CGTAACTGTCTCCA-TTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACAT
* ** * * * * * *
3348100 GACATTGATGCTTTGGTATCATAAGAAAAACTTTTCTTTCCATCGTTTTTTATAGAACCCAAGTT
129 GACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTT
* * * *
3348165 TGTCTCTTAAATACGATAAATATGAATACTCATACTAATTCCCATTCTTTTCAGGATTAGGCACC
194 TGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACC
* * * *
3348230 ATAAACAAAGTCTTTTCATTAGGATACAT-TTATTGATGCTTTGGTTTCGCAAAGAAAGGCTTGT
259 ATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGC-AAGAAAGGCTTTT
* * * *
3348294 TTC-CTACCAATTTTTGTAAAGTCTAAGTTCTTACCTCAAATGAGACAACCATAGATTCTAGTAA
323 TTCTC-ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAA
* ***
3348358 TGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCTCCTCATTCTAATAAATGATATT
387 TGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATT
*
3348423 GATGATTTTCTTTTGCATGAAAATC
452 GATGATTTTCTTTTGCATGGAAATC
* * * *
3348448 TTTT-TTTACCTTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACATGCCTCGATTCTC
1 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC
* * *
3348512 ATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAAGACATTCCCTTCATTAGGATACATGA
66 GTAACTGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGA
* ** * * * * * *
3348577 CATTGACGCTTTGGTGTCATAAGAAAAGCTTTTCTTTCAACCGTTTTTGGTACAATCGAAGTTTA
131 CATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTG
* * * * * * *
3348642 TCTCTTAAATGCA-ACAAACTTGAATACTTATACCAGTCCCCATTCTTCTCAGGCTTAGGTC-CC
196 TCTCTTAAAT-AAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGG-CACC
* * * * * *
3348705 ACAAATATGGTCTTTTCATTAGGATATATCATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTT
259 ATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTT
* * * *
3348770 CCTCACCAATTTTTGCAAAGTCTAACTT-ATGCCTCAAATGAGACAAACATGGATTCTAGTAATG
324 TCTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATG
* * **
3348834 ATCTTCATTCATTTTCTAAATT-GAAACTATAAACACATTCTCCTCATTAGGATAAATGATATTG
389 ATCTTCATTCATTTTGT-GATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTG
* *
3348898 ATGATTTTCTTTTGCGTAGAAATC
453 ATGATTTTCTTTTGCATGGAAATC
* * *
3348922 TTTTCTTTGCCCTATTTTCCTTTAAATCAATGTTCATCCCTTAAATAAGACAAGCATCGATTGTC
1 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC
* * * * *
3348987 GTAACAGTCTCCATTATTTTCAAGATTGAGAAGCCAAAACACATCCCCAT-ATTAGGATACATGA
66 GTAACTGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGA
* * ** * *
3349051 CGTTGATGCTTTAGTGTCATAAGAAAAGCTTTTCTTTCCATCATTTTTGATAGAATCATAGTTTG
131 CATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTG
* * * * * **
3349116 CCTCTTAAATACGATAAACATGAACACTCATACTAATCGCTGTTCTTTTCAGGATTAGGCACCAT
196 TCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCAT
* * * * * *
3349181 AAACATAGTCTTTTCATAAGGATATATCATATTGATGCTTTGGTTTTGCAAGAATGGCTTTTATC
261 AAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTC
* * * *
3349246 CCACCAATTTTCT-TAAAGTTTAAGTTCGTGCCTCATATGAGACGAACATGGATTCTAGTAATGA
326 TCACCAATTTT-TGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGA
* *
3349310 TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGATAAATAATATTGAT
390 TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGAT
*
3349375 GATTTTATTTTGCATGGAAATC
455 GATTTTCTTTTGCATGGAAATC
* * * *
3349397 TTTTCTTTGCCTTAATTTCCTTAAAATCAAAGTTCATCCTTTAAATAAGACAAGCATCGATTCCC
1 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC
* * * * * *
3349462 GTAACAGTCTCCATTCTTTTCAAGATTGGGAAGTCAAAACATATTTCCTTCATTGGGATAAATGA
66 GTAACTGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGA
* * * * * *
3349527 CATTGTTACTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACTATTTTTGATAAAATCATAGTTTG
131 CATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTG
* * ** * *
3349592 TCTCTTAAATATGACAAACTTGAATACTCATACTAATCCTCGTTTTTTTTTAGGATTAGGCACCA
196 TCTCTTAAATAAGACAAACATGAATACTCATACTAATCC-CCATTCTTTTCAGGATTAGGCACCA
* * * *
3349657 TAAACATAGTCTTCTCATTAAGATACACCATATTGATTCTTTGGTTTCGC----AAGGATTTTTT
260 TAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTT
* * * * * * * *
3349718 CCCACCAATTTTTGTAAAGTCTAAGTTTGTTCCTCAATTGAGGCAAGCATGGATTTTAGTCATGA
325 CTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGA
* * * *
3349783 TCTTCATTCATTTTGTGATTAGGCACTATAAAAACTTTCTCCTTATTAGGATAAATGATGTTGAT
390 TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGAT
* *
3349848 GA-TTTATTTTGCATGGGAATC
455 GATTTTCTTTTGCATGGAAATC
* * * * **
3349869 TTTTCTTTGCCCTATTTTCATTAAAATCGAAGTTCATCCCTTAAATAAGATAAGCCTCCTTTCTC
1 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC
* * *
3349934 GTAACTCTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATCCCCTTCATTAGGATGCATGA
66 GTAACTGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGA
* * *
3349999 CATTAAAGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCCACCATTTTTGATAGAATCAAAGTTTG
131 CATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTG
* * * * *
3350064 TCTTTTAAATAAGACAAACATGAATAATCATACTAATCCCTATTCTTTTCAAGATTAGGCAGCAT
196 TCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCAT
* * * ** * *
3350129 AAACGTAGTCTTCTCATTATGATACATCATTTTGATGCTTTGGTTTCATAATAAAAGCTTTTTTC
261 AAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTC
* * * * ** *
3350194 TCACCAATTTTTGTAAAGTCTAAGTCCATACCTTAAATTTGACAAACATGGATTCTAGTAATGAA
326 TCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGAT
* * * * * * * * *
3350259 ATTGACTCATTTTGTAATTAGACAATATAAACACATTCTCCTAATGAGGATAAATAATATTGATG
391 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATG
*
3350324 ATTTTATTTTGCATGGAAATC
456 ATTTTCTTTTGCATGGAAATC
* ** * * * *
3350345 TTTTCTTTGCCTTATTTTTATTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCCT-TATTTCT
1 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGA-TTCT
* * * * * * *
3350409 CGCAACTCTCTCCATTCTTTTCAAGATTGGGAAGCCGAAACACATTTCCTCCATTAGGATGCGTG
65 CGTAACTGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATG
* * * * *
3350474 ACATTGATGCTTTTGTGTCGCAAGAAAAGCTTTTCTTTCCACCATGTTTGGTATAATCAAGGTTT
130 ACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTT
* * * * **
3350539 ATCTCTTAAATAAGACAAACTTGAATAATCATACTAATCCCCATTTTTTTCAAAATTAGGCACCA
195 GTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCA
* * ** *
3350604 TAAACATAGTCTTCTCATTATGATACATCATTTTGATGCTTTGGTTTCATAAGAAAAGCTTTTTT
260 TAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTT
* * * * *
3350669 CTCTCCAATTTTTGTAAATTCTAAGTTTGTACCTCAAATGAGACAAACATGGATTCTAGTAAAGA
325 CTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGA
* ** *
3350734 TCTTGATTCATTTTGTGATTAAACACTATAAACACATTCTCCTAATTAGGATAAATGATATTGAT
390 TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGAT
*
3350799 GATTTACTTTTGCATGGAAATC
455 GATTTTCTTTTGCATGGAAATC
* *
3350821 TTTTCTTTGCCTTATTTTCCTAAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC
1 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC
** * * * *
3350886 GTAACAATGTCCATTCTTTTCAAGGTTGGAAAGCCAAAAGACATTCCCTTCATTAGGATACAT-A
66 GTAACTGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGA
** * * * *
3350950 GCATTGATGCTTTGGTGTCGCAAGAAAAGCTTAACTTTCCACTGA-TTTTGGTATAATCAAGGTT
131 -CATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAC-CATTTTTGATAGAATCAAAGTT
* * * * * * *
3351014 TATCTTTTAAATACGACAAACTTGAATACTCATACTAATCCCCGTTCTTTTCAAGATTAGGTACC
194 TGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACC
* * ** *
3351079 ATAAATATAGTCTTCTCATTAGGATACATCATATTGAAGCTTTGGTTTCATAAGAAAGGCTTTGT
259 ATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTT
* ** * * *
3351144 TCCCACCAATTTTT-TAAAGTCTAAGTTTATGCCTCAAATAAGACAAATATGGATTCTAGTAATA
324 TCTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATG
* * *
3351208 ACCTTCATTCATTTTTTTTGAATT-GGAACTATAAACACATTCTCCTCATTAGGATAAATGATAT
389 ATCTTCATTCA--TTTTGTG-ATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATAT
* * * *
3351272 TGATCATTTTTTTTTTGGCATTGAAAGC
451 TGATGA-TTTTCTTTT-GCATGGAAATC
* * * * *
3351300 TTTTCTTTGCCCTACTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGAGAGGCAAT-GATTCT
1 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGC-ATCGATTCT
** ** * * * *
3351364 CACAA-TAGTCATTTATTCTTTCCAAGATTGGGAAGCCAAAACACACATTCCTTTTATTAGGATC
65 CGTAACT-GTC-TCCATTCTTTTCAAGATTGGGAAGCC-AAA-ACACATTCCCTTCATTAGGATA
* ** * * * *
3351428 CATGACATTGATGCTTTGGTGTCGCAAAAAAAGCTTTAATTTCCACCGTTTCTGATAAAATGAAA
126 CATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAA
* * * * * * * * *
3351493 GTTTGACTCTTAAATACGACAAGCATAAATACTTATACTAATCCTCGTTCTTTTCGGGATTAGTC
191 GTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGC
* * * *
3351558 ACCATAAACATAGTCTTCTCATTAGGATACATTATATTGATTCTTTGGTTTCGCAAGAAGGGATT
256 ACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTT
* * *
3351623 TTTT-TCCACCAATTTTTGTAAAGTCTAAGCTCGTGCCTCAATTGAGACAAACATTGATTCTAGT
321 TTTTCT-CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGT
* * * *
3351687 CATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGATAAATAACA
385 AATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
* *
3351752 TTGATGATTTTCTTTTGTAAGGAAAT-
450 TTGATGATTTTCTTTTGCATGGAAATC
* * * * * *
3351778 TTGTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCCATTGAATAAGACAAGCCTTGATTTT
1 TT-TTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCT
* ** * * * * * * *
3351843 CATAAAAGGCTCTATTCTTTTCAAGATTGGGAAGCCAAAAGACATTCTCTTTATTGGGATACAAG
65 CGTAACTGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATG
* * * * * * *
3351908 ATATTGATGCTTTGCTATAGCAAGAAAAGCCTTTT-TTTCCTCCGCTTTTT-ATAGAATCAATGT
130 ACATTGATGCTTTGGTGTCGCAAGAAAAG-CTTTTCTTTCCACC-ATTTTTGATAGAATCAAAGT
* * *
3351971 TTGTCTCTTAAATAAGACAAGCATGAATGGC-CATACTAATCCCCATTCTTTTCAAGATTAGGCA
193 TTGTCTCTTAAATAAGACAAACATGAAT-ACTCATACTAATCCCCATTCTTTTCAGGATTAGGCA
** * * * * *
3352035 ATATAAACATAGTCTTCTCATTATGATACATCATTTTGATGTTTTGGTTTCACAAGAAAAGCTTT
257 CCATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTT
*
3352100 TTTCTCACTAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAA
322 TTTCTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAA
*
3352165 T-AGTCTTCATTCATTTTGTGATTAGGCACTATAAGCACATTCTCCTCATTAGGATAAATGATAT
387 TGA-TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATAT
* *
3352229 TGATGATTTTCTTTTGCATGAAAATA
451 TGATGATTTTCTTTTGCATGGAAATC
* * * * *
3352255 TTTTCTTTACCCTATTTTCCTTAAAATCAAGGCTCATCCCTTAAATAAGACCAGCCTCGATTCTC
1 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC
* * * * *
3352320 GTAA-TAGTCTCCATTCTTTTCAAGATTGGGAAACCAAAAGACA-TACCTTCTTTAGGATACAAG
66 GTAACT-GTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATG
* *
3352383 ACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATTAATA-TT
130 ACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAA-AGTT
* * ** * *
3352447 TGTCTCTTAAATAAAAGAAACATGAATGGTCATACTAATCCCCATTCTTTTCAGGATTAGGTA-G
194 TGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACC
* * *
3352511 AAAAACACAGTCTTCTCATTTGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTT
259 ATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTT
* *
3352576 TCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAACG
324 TCTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATG
* * *
3352641 GTCTTCATTCATTTTGTGATTAGGCACTATAAGCACATTCTCCTTATTAGGATAAATGATATTGA
389 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGA
3352706 TGATTTTCTTTTGCATGGAAATC
454 TGATTTTCTTTTGCATGGAAATC
* * * * *
3352729 TTTTATTTTCCTTATTTTCCTTAAAATCAAAGTTTA-CGCCTTAAATAAGACAAGCATCGATTCC
1 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC-CCTTAAATAAGACAAGCATCGATTCT
* * * ** *
3352793 CGTAACAGTCTCTATTCTATTCAAGATTGGGAAGCCAAAATGC-TTGCCCTTCATTAGGATAAAT
65 CGTAACTGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATT-CCCTTCATTAGGATACAT
* * ** *
3352857 GACATTGATACTTTGGTGTCCCAAGAAAAGCTTTTCTTTCCATTGA-TTTTGATAGAATTAAAGT
129 GACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA-CCATTTTTGATAGAATCAAAGT
* * * * *
3352921 TTGTCTCTTAAATATGACAAACATGAATACT-ATTAGTAATCCCCGTTGTTTTCAGGATTAGGCC
193 TTGTCTCTTAAATAAGACAAACATGAATACTCA-TACTAATCCCCATTCTTTTCAGGATTAGGCA
*
3352985 CCATGAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTT
257 CCATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTT
* * * * *
3353050 TTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGTCTCAAATAAGGCAAACATAGATTCTAGTAA
322 TTTCTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAA
* *
3353115 TGATCTTCATTCATTTTGTGATTAGGCACTTTAAACACATTCTCCTCATTAGGATAAATGATTTT
387 TGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATT
* *
3353180 GATGCTTTTCTTTTGCATGGTAATC
452 GATGATTTTCTTTTGCATGGAAATC
* * * * *
3353205 TTTTCTTTGCCCTA-TTTCCTT-AAATCAATGTTCATACCTTAAATAAAACAACCATTGATTCTC
1 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC
* ** * *
3353268 GTAA-TAGTCTCAATTC-TTTCAAGATTGGGAAGCCAAAACATGTTCCCTTCATTAGGATGCTTG
66 GTAACT-GTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATG
* * * * * * *
3353331 ACATTGAAGCTTTGCTATCGCAAGAAAGGCTTTT-TTTCCACCGTTTTGGATAGAATCAAAATTT
130 ACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTT
* * **
3353395 TTCTCTTAAGTAAGACAAACATGAATACTCATACTAATCCATATT-TTTTCAAGG-TTAGGCACC
195 GTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTC-AGGATTAGGCACC
* * * * * *
3353458 ATAAACTTAGTATTCTCATTATGATACATCATATTGATGCTTTTGTTTTGCAAGAACA-GTTTTT
259 ATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAA-AGGCTTTT
* * **
3353522 TTC-CTACCAATTTTCT-TAAAGTCTAAGTTTGTGCCTCAAATAAGATGAACATGGATTCTAGTA
323 TTCTC-ACCAATTTT-TGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTA
*
3353585 ATGATTTTCATTCATTTTGTGATTAGGCACT
386 ATGATCTTCATTCATTTTGTGATTAGGCACT
3353616 GTTAGGATCT
Statistics
Matches: 5241, Mismatches: 792, Indels: 178
0.84 0.13 0.03
Matches are distributed among these distances:
470 1 0.00
471 213 0.04
472 285 0.05
473 192 0.04
474 670 0.13
475 1357 0.26
476 1751 0.33
477 272 0.05
478 41 0.01
479 129 0.02
480 34 0.01
481 50 0.01
482 194 0.04
483 52 0.01
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (476 bp):
TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC
GTAACTGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGA
CATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTG
TCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCAT
AAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTC
TCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGAT
CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATG
ATTTTCTTTTGCATGGAAATC
Found at i:3352189 original size:158 final size:160
Alignment explanation
Indices: 3347728--3353187 Score: 695
Period size: 159 Copynumber: 34.4 Consensus size: 160
3347718 CTTATACTAA
* * * * *
3347728 TCTCCGTTCTTTTTAGT-ATTAGGCACA-ATAAATAAAGTCTTCTTATTAGGATACAT-ATATTG
1 TCTCCATTC-TTTTCGTGATTAGGCA-ATATAAACACAGTCTTCTCATTAGGATACATCATATTG
* *
3347790 ATGCTTTGGTTTCGCAAGAAAGGCTTTT-TTCT-CACCAATTTTTGTAAAGTCTAA-GTTCGTGC
64 ATGCTTTGGTTTCGCAAGAAAAGCTTTTCTT-TACACTAATTTTTGTAAAGTCTAAGGTTCGTGC
* * *
3347852 CTCAAATGAGACAAACATGAATTTTAGTAAT-G
128 CTCAAATAAGACAAACATGGATTCTAGTAATAG
* * * * * * * *
3347884 ATCTTCATTCATTTT-GTGATTAGACACTATAAATACATTC-TCTTATTTAGGATAAATGATATT
1 -TCTCCATTC-TTTTCGTGATTAGGCAATATAAACACAGTCTTCTCA-TTAGGATACATCATATT
* ** * * * * * * * * **
3347947 GATGATTTACTTTTGCATGGAAATCTTTTCTTTGCCCT-ATTTTCCT-TAAAATC-AAAGTTCAC
63 GATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTACACTAATTTT--TGTAAAGTCTAAGGTTCGT
* * * * * * *
3348009 CCCTTAAATAAGATAAGCAT-CAGTTCTCGTAACAG
126 GCCTCAAATAAGACAAACATGGA-TTCTAGTAATAG
* * * * * * * * * * *
3348044 TCACTACTT-TTTCCATGATT-GGGAAGCCA-AAACACATTC-CCTTCATTAGGATACCTGACAT
1 TCTCCA-TTCTTTTCGTGATTAGGCAA--TATAAACACAGTCTTC-TCATTAGGATACATCATAT
* ** * * * * * *
3348105 TGATGCTTTGGTATCATAAGAAAAACTTTTCTTTCCATCGT--TTTTTATAGAA-CCCAA-GTTT
62 TGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTACA-C-TAATTTTTGTA-AAGTCTAAGGTTC
* * * * * *
3348166 GT-CTCTTAAATACGATAAATATGAATACTCATACTAAT--
124 GTGC-CTCAAATAAGACAAACATGGAT--TC-TAGTAATAG
** * * *
3348204 TC-CCATTCTTTTCAG-GATTAGGCACCATAAACAAAGTCTTTTCATTAGGATACAT-TTATTGA
1 TCTCCATTCTTTTC-GTGATTAGGCAATATAAACACAGTCTTCTCATTAGGATACATCATATTGA
* * * *
3348266 TGCTTTGGTTTCGCAAAGAAAGGCTTGTT-TCCTAC-C-AATTTTTGTAAAGTCTAA-GTTCTTA
65 TGCTTTGGTTTCGC-AAGAAAAGCTT-TTCT-TTACACTAATTTTTGTAAAGTCTAAGGTTCGTG
* * *
3348327 CCTCAAATGAGACAACCATAGATTCTAGTAAT-G
127 CCTCAAATAAGACAAACATGGATTCTAGTAATAG
* * * * * *** * *
3348360 ATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCTCCTCATTCTAATAAATGATATTGA
1 -TCTCCATTCTTTTCGTGATTAGGCAATATAAACACAGTCTTCTCATTAGGATACATCATATTGA
* ** * * * * * * * *
3348425 TGATTTTCTTTTGCATGAAAATCTTTT-TTTAC-CTTATTTTCCT-TAAAATC-AAAGTTCATCC
65 TGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTACACTAATTTT--TGTAAAGTCTAAGGTTCGTGC
* ** * * *
3348486 CTTAAATAAGACATGCCTCGATTCTCA-TAACAG
128 CTCAAATAAGACAAACATGGATTCT-AGTAATAG
** * * * * * * *
3348519 TCTCCATTCTTTTCAAGATT-GGGAAGCCA-AAAGACATTC-CCTTCATTAGGATACATGACATT
1 TCTCCATTCTTTTCGTGATTAGGCAA--TATAAACACAGTCTTC-TCATTAGGATACATCATATT
* * ** ** * **
3348581 GACGCTTTGGTGTCATAAGAAAAGCTTTTCTTT-CAAC-CGTTTTTGGTACAA-TCGAA-GTTTA
63 GATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTAC-ACTAATTTTT-GTA-AAGTCTAAGGTTCG
* * * * * **
3348642 T-CTCTTAAATGCA-ACAAACTTGAATACTTA-TACCAG
125 TGC-CTCAAAT-AAGACAAACATGGATTC-TAGTAATAG
* * * ** * * ** * *
3348678 TCCCCATTCTTCTCAG-GCTTAGGTC-CCACAAATATGGTCTTTTCATTAGGATATATCATATTG
1 TCTCCATTCTTTTC-GTGATTAGG-CAATATAAACACAGTCTTCTCATTAGGATACATCATATTG
* * * * * * *
3348741 ATGCTTTGGTTTCACAAGAAAGGCTTTT-TCCT-CACCAATTTTTGCAAAGTCTAA-CTT-ATGC
64 ATGCTTTGGTTTCGCAAGAAAAGCTTTTCT-TTACACTAATTTTTGTAAAGTCTAAGGTTCGTGC
*
3348802 CTCAAATGAGACAAACATGGATTCTAGTAAT-G
128 CTCAAATAAGACAAACATGGATTCTAGTAATAG
* * * * * * *
3348834 ATCTTCATTCATTTTC-TAAATT--GAAACTATAAACACATTCTCCTCATTAGGATAAATGATAT
1 -TCTCCATTC-TTTTCGT-GATTAGGCAA-TATAAACACAGTCTTCTCATTAGGATACATCATAT
* ** * * * * * * *
3348896 TGATGATTTTCTTTTGCGTAG-AAATCTTTTCTTTGCCCT-ATTTTCCTTTAAA-TC-AATGTTC
62 TGATGCTTTGGTTTCGC-AAGAAAAGCTTTTCTTTACACTAATTTT--TGTAAAGTCTAAGGTTC
* * * * * * * *
3348957 ATCCCTTAAATAAGACAAGCATCGATTGTCGTAACAG
124 GTGCCTCAAATAAGACAAACATGGATTCTAGTAATAG
* ** * ** * **
3348994 TCTCCATTATTTTCAAGATT-GAG-AAGCCA-AAACACA-TCCCCAT-ATTAGGATACATGACGT
1 TCTCCATTCTTTTCGTGATTAG-GCAA--TATAAACACAGTCTTC-TCATTAGGATACATCATAT
* * ** * *
3349054 TGATGCTTTAGTGTCATAAGAAAAGCTTTTCTTTCCA-TCATTTTTGATAGAA-TC-ATA-GTT-
62 TGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTACACTAATTTTTG-TA-AAGTCTA-AGGTTC
* * * ** * *
3349114 -TGCCTCTTAAATACGATAAACATGAACACTCA-TACTAA
124 GTGCCTC--AAATAAGACAAACATGGATTCT-AGTAATAG
* ** ** * * * *
3349152 TCGCTGTTCTTTTCAG-GATTAGGCACCATAAACATAGTCTTTTCATAAGGATATATCATATTGA
1 TCTCCATTCTTTTC-GTGATTAGGCAATATAAACACAGTCTTCTCATTAGGATACATCATATTGA
* ** * ** * *
3349216 TGCTTTGGTTTTGCAAGAATGGCTTTT-ATCCCACCAATTTTCT-TAAAGTTTAA-GTTCGTGCC
65 TGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTACACTAATTTT-TGTAAAGTCTAAGGTTCGTGCC
* * *
3349278 TCATATGAGACGAACATGGATTCTAGTAAT-G
129 TCAAATAAGACAAACATGGATTCTAGTAATAG
* * * * * * *
3349309 ATCTTCATTCATTTT-GTGATTAGGCACTATAAACACATTCTCCTTATTAGGATAAATAATATTG
1 -TCTCCATTC-TTTTCGTGATTAGGCAATATAAACACAGTCTTCTCATTAGGATACATCATATTG
* ** * * * * * * * * *
3349373 ATGATTTTATTTTGCATGGAAATCTTTTCTTTGC-CTTAATTTCCT-TAAAATC-AAAGTTCAT-
64 ATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTACAC-TAATTT-TTGTAAAGTCTAAGGTTCGTG
* * * ** *
3349434 CCTTTAAATAAGACAAGCATCGATTCCCGTAACAG
127 CC-TCAAATAAGACAAACATGGATTCTAGTAATAG
** * * * * * *
3349469 TCTCCATTCTTTTCAAGATT-GGGAAGTCA-AAACATA-T-TTCCTTCATTGGGATAAATGACAT
1 TCTCCATTCTTTTCGTGATTAGGCAA-T-ATAAACACAGTCTT-C-TCATTAGGATACATCATAT
* * * * * * *
3349530 TGTTACTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACT-ATTTTTGATAAAATC-ATA-GTTTG
62 TGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTACACTAATTTTTG-TAAAGTCTA-AGGTTCG
* * * * * * *
3349592 T-CTCTTAAATATGACAAACTTGAATACTCA-TACTAA
125 TGC-CTCAAATAAGACAAACATGGATTCT-AGTAATAG
** * * ** * * *
3349628 TCCTCGTTTTTTTTTAG-GATTAGGCACCATAAACATAGTCTTCTCATTAAGATACACCATATTG
1 T-CTC-CATTCTTTTCGTGATTAGGCAATATAAACACAGTCTTCTCATTAGGATACATCATATTG
* * ** * * *
3349692 ATTCTTTGGTTTCGCAAG----GATTTT-TTCCCACCAATTTTTGTAAAGTCTAA-GTTTGTTCC
64 ATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTACACTAATTTTTGTAAAGTCTAAGGTTCGTGCC
* * * * * *
3349751 TCAATTGAGGCAAGCATGGATTTTAGTCAT-G
129 TCAAATAAGACAAACATGGATTCTAGTAATAG
* * * ** * * * * *
3349782 ATCTTCATTCATTTT-GTGATTAGGCACTATAAAAACTTTCTCCTTATTAGGATAAATGATGTTG
1 -TCTCCATTC-TTTTCGTGATTAGGCAATATAAACACAGTCTTCTCATTAGGATACATCATATTG
* * * * ** * * * * * * *
3349846 ATGATTT-ATTTTGCATGGGAATCTTTTCTTTGCCCT-ATTTTCAT-TAAAATCGAA-GTTCATC
64 ATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTACACTAATTTT--TGTAAAGTCTAAGGTTCGTG
* * * * *** * *
3349907 CCTTAAATAAGATAAGCCTCCTTTCTCGTAACT-C
127 CCTCAAATAAGACAAACATGGATTCTAGTAA-TAG
** * * ** * * *
3349941 TCTCCATTCTTTTCAAGATT-GGGAAGCCA-AAACACA-TCCCCTTCATTAGGATGCATGACATT
1 TCTCCATTCTTTTCGTGATTAGGCAA--TATAAACACAGTCTTC-TCATTAGGATACATCATATT
* * * * * * * *
3350003 AAAGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCCAC-CATTTTTGATAGAA-TC-AAAGTTTGT
63 GATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTACACTAATTTTTG-TA-AAGTCTAAGGTTCGT
* * * * *
3350065 -CTTTTAAATAAGACAAACATGAATAATC-A-TACTAA
126 GC-CTCAAATAAGACAAACATGGAT--TCTAGTAATAG
** ** ** * *
3350100 TC-CCTATTCTTTTCAAGATTAGGCAGCATAAACGTAGTCTTCTCATTATGATACATCATTTTGA
1 TCTCC-ATTCTTTTCGTGATTAGGCAATATAAACACAGTCTTCTCATTAGGATACATCATATTGA
** * * * * *
3350164 TGCTTTGGTTTCATAATAAAAGCTTTT-TTCT-CACCAATTTTTGTAAAGTCTAA-GTCCATACC
65 TGCTTTGGTTTCGCAAGAAAAGCTTTTCTT-TACACTAATTTTTGTAAAGTCTAAGGTTCGTGCC
* ** *
3350226 TTAAATTTGACAAACATGGATTCTAGTAATGAAA
129 TCAAATAAGACAAACATGGATTCTAGTAAT--AG
* * * * * * * * * *
3350260 T-T-GACTCATTTT-GTAATTAGACAATATAAACACATTCTCCTAATGAGGATAAATAATATTGA
1 TCTCCATTC-TTTTCGTGATTAGGCAATATAAACACAGTCTTCTCATTAGGATACATCATATTGA
* ** * * * * * * * * * *
3350322 TGATTTTATTTTGCATGGAAATCTTTTCTTTGC-CTTATTTTTATTAAAATC-AAAGTTCAT-CC
65 TGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTACACTAATTTTT-GTAAAGTCTAAGGTTCGTGCC
* * * * * * * *
3350384 TTTAAATAAGGCAAGCCT-TATTTCTCGCAACT-C
129 -TCAAATAAGACAAACATGGA-TTCTAGTAA-TAG
** * *** * * * *
3350417 TCTCCATTCTTTTCAAGATT-GGGAAGCCGAAACACA-T-TTCCTCCATTAGGATGCGTGACATT
1 TCTCCATTCTTTTCGTGATTAGGCAA-TATAAACACAGTCTT-CT-CATTAGGATACATCATATT
* * * * * **
3350479 GATGCTTTTGTGTCGCAAGAAAAGCTTTTCTTTCCAC-CATGTTTGGTATAA-TC-AAGGTTTAT
63 GATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTACACTAAT-TTTTGTA-AAGTCTAAGGTTCGT
* * * * *
3350541 -CTCTTAAATAAGACAAACTTGAATAATC-A-TACTAA
126 GC-CTCAAATAAGACAAACATGGAT--TCTAGTAATAG
* * *** ** * * *
3350576 TCCCCATTTTTTTCAAAATTAGGCACCATAAACATAGTCTTCTCATTATGATACATCATTTTGAT
1 TCTCCATTCTTTTCGTGATTAGGCAATATAAACACAGTCTTCTCATTAGGATACATCATATTGAT
** * * * * *
3350641 GCTTTGGTTTCATAAGAAAAGCTTTT-TTCT-CTCCAATTTTTGTAAATTCTAA-GTTTGTACCT
66 GCTTTGGTTTCGCAAGAAAAGCTTTTCTT-TACACTAATTTTTGTAAAGTCTAAGGTTCGTGCCT
*
3350703 CAAATGAGACAAACATGGATTCTAGTAA-AG
130 CAAATAAGACAAACATGGATTCTAGTAATAG
** ** * * * * * *
3350733 ATCTTGATTCATTTT-GTGATTAAACACTATAAACACATTCTCCTAATTAGGATAAATGATATTG
1 -TCTCCATTC-TTTTCGTGATTAGGCAATATAAACACAGTCTTCTCATTAGGATACATCATATTG
* ** * * * * * * ** * * * *
3350797 ATGATTTACTTTTGCATGGAAATCTTTTCTTTGC-CTTATTTTCCTAAAAATC-AAAGTTCATCC
64 ATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTACACTAATTTTTGT-AAAGTCTAAGGTTCGTGC
* * * * * *
3350860 CTTAAATAAGACAAGCATCGATTCTCGTAACAA
128 CTCAAATAAGACAAACATGGATTCTAGTAATAG
* ** * * * * * * *
3350893 TGTCCATTCTTTTCAAGGTT-GGAAAGCCA-AAAGACATTC-CCTTCATTAGGATACAT-AGCAT
1 TCTCCATTCTTTTCGTGATTAGGCAA--TATAAACACAGTCTTC-TCATTAGGATACATCA-TAT
* ** * * * **
3350954 TGATGCTTTGGTGTCGCAAGAAAAGCTTAACTTTCCACTGATTTTGGTATAA-TC-AAGGTTTAT
62 TGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTACACTAATTTTTGTA-AAGTCTAAGGTTCGT
* * * * * * * *
3351017 -CTTTTAAATACGACAAACTTGAATACTCA-TACTAA
126 GC-CTCAAATAAGACAAACATGGATTCT-AGTAATAG
* * ** * ** * * *
3351052 TCCCCGTTCTTTTCAAGATTAGGTACCATAAATATAGTCTTCTCATTAGGATACATCATATTGAA
1 TCTCCATTCTTTTCGTGATTAGGCAATATAAACACAGTCTTCTCATTAGGATACATCATATTGAT
** * * ** * **
3351117 GCTTTGGTTTCATAAGAAAGGC-TTTGTTCCCACCAATTTTT-TAAAGTCTAA-GTTTATGCCTC
66 GCTTTGGTTTCGCAAGAAAAGCTTTTCTTTACACTAATTTTTGTAAAGTCTAAGGTTCGTGCCTC
* *
3351179 AAATAAGACAAATATGGATTCTAGTAATAA
131 AAATAAGACAAACATGGATTCTAGTAATAG
* * ** * * * *
3351209 CCTTCATTCATTTTTTTTGAATT-GG-AACTATAAACACATTCTCCTCATTAGGATAAATGATAT
1 TCTCCATTC--TTTTCGTG-ATTAGGCAA-TATAAACACAGTCTTCTCATTAGGATACATCATAT
** * * * * * *
3351272 TGAT-CATTTTTTTTTTGGCATTG-AAAGCTTTTCTTTGCCCTACTTTCCTT-TAAA-TC-AAAG
62 TGATGC---TTTGGTTTCGCA-AGAAAAGCTTTTCTTTACACTAATTT--TTGTAAAGTCTAAGG
* * * * ** *
3351332 TTCATACCTTAAATAAGAGAGGCAAT-GATTCTCA-CAATAG
121 TTCGTGCCTCAAATAAGACAAAC-ATGGATTCT-AGTAATAG
** * ** * * * * * * * *
3351372 TCATTTATTCTTTCCAAGATT-GGGAAGCCAAAACACACATTCCTT-TTATTAGGATCCATGACA
1 TC-TCCATTCTTTTCGTGATTAGGCAA--TATAA-ACACAGT-CTTCTCATTAGGATACATCATA
* * ** * ** * * * *
3351435 TTGATGCTTTGGTGTCGCAAAAAAAGCTTTAATTTCCAC-CGTTTCTGATAAAAT-GAAAGTT--
61 TTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTACACTAATTTTTG-TAAAGTCTAAGGTTCG
* * * ** * * *
3351496 TGACTCTTAAATACGACAAGCATAAATACTTA-TACTAA
125 TG-C-CTCAAATAAGACAAACATGGATTC-TAGTAATAG
* * * ** * *
3351534 TC-CTCGTTCTTTTCGGGATTAGTCACCATAAACATAGTCTTCTCATTAGGATACATTATATTGA
1 TCTC-CATTCTTTTCGTGATTAGGCAATATAAACACAGTCTTCTCATTAGGATACATCATATTGA
* ** * * * *
3351598 TTCTTTGGTTTCGCAAGAAGGGATTTT-TTTCCACCAATTTTTGTAAAGTCTAA-GCTCGTGCCT
65 TGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTACACTAATTTTTGTAAAGTCTAAGGTTCGTGCCT
* * * *
3351661 CAATTGAGACAAACATTGATTCTAGTCAT-G
130 CAAATAAGACAAACATGGATTCTAGTAATAG
* * * * * * * *
3351691 ATCTTCATTCATTTT-GTGATTAGGCACTATAAACACATTCTCCTTATTAGGATAAATAACATTG
1 -TCTCCATTC-TTTTCGTGATTAGGCAATATAAACACAGTCTTCTCATTAGGATACATCATATTG
* ** * * * * * * * * * *
3351755 ATGATTTTCTTTTGTAAGGAAA-TTTGTTCTTTGCCCT-ATTTTCCT-TAAAATC-AAAGCTCAT
64 ATGCTTTGGTTTCGCAAGAAAAGCTT-TTCTTTACACTAATTTT--TGTAAAGTCTAAGGTTCGT
** * * * * *
3351816 -CCATTGAATAAGACAAGCCTTGATTTTCA-TAAAAG
126 GCC-TCAAATAAGACAAACATGGATTCT-AGTAATAG
* * ** * * * * * * **
3351851 GCTCTATTCTTTTCAAGATT-GGGAAGCCA-AAAGACATTC-TCTTTATTGGGATACAAGATATT
1 TCTCCATTCTTTTCGTGATTAGGCAA--TATAAACACAGTCTTC-TCATTAGGATACATCATATT
* * * * * *** * * *
3351913 GATGCTTTGCTATAGCAAGAAAAGCCTTTT-TTTCCTCCGCTTTTTATAGAA-TC-AATGTTTGT
63 GATGCTTTGGTTTCGCAAGAAAAG-CTTTTCTTTACACTAATTTTTGTA-AAGTCTAAGGTTCGT
* * * * * * *
3351975 -CTCTTAAATAAGACAAGCATGAATGGCCA-TACTAA
126 GC-CTCAAATAAGACAAACATGGAT-TCTAGTAATAG
* ** * * *
3352010 TCCCCATTCTTTTCAAGATTAGGCAATATAAACATAGTCTTCTCATTATGATACATCATTTTGAT
1 TCTCCATTCTTTTCGTGATTAGGCAATATAAACACAGTCTTCTCATTAGGATACATCATATTGAT
* *
3352075 GTTTTGGTTTCACAAGAAAAGCTTTT-TTCT-CACTAATTTTTGTAAAGTCTAA-GTTCGTGCCT
66 GCTTTGGTTTCGCAAGAAAAGCTTTTCTT-TACACTAATTTTTGTAAAGTCTAAGGTTCGTGCCT
*
3352137 CAAATGAGACAAACATGGATTCTAGTAATAG
130 CAAATAAGACAAACATGGATTCTAGTAATAG
* * * * * * *
3352168 TCTTCATTCATTTT-GTGATTAGGCACTATAAGCACATTCTCCTCATTAGGATAAATGATATTGA
1 TCTCCATTC-TTTTCGTGATTAGGCAATATAAACACAGTCTTCTCATTAGGATACATCATATTGA
* ** * * ** * * * * *
3352232 TGATTTTCTTTTGCATGAAAATATTTTCTTTACCCT-ATTTTCCT-TAAAATC-AAGGCTCATCC
65 TGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTACACTAATTTT--TGTAAAGTCTAAGGTTCGTGC
* * * * * *
3352294 CTTAAATAAGACCAGCCTCGATTCTCGTAATAG
128 CTCAAATAAGACAAACATGGATTCTAGTAATAG
** * * * * ** *
3352327 TCTCCATTCTTTTCAAGATTGGGAAACCA-AAAGACA-TACCTTCT--TTAGGATACAAGACATT
1 TCTCCATTCTTTTCGTGATTAGGCAA-TATAAACACAGT--CTTCTCATTAGGATACATCATATT
* * ** ** *
3352388 GATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAC-CGTTTTTGATAGAA-T-TAATATTTGT
63 GATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTACACTAATTTTTG-TA-AAGTCTAAGGTTCGT
* * * * * *
3352450 -CTCTTAAATAAAAGAAACATGAATGGTC-A-TACTAA
126 GC-CTCAAATAAGACAAACATGGAT--TCTAGTAATAG
* * *
3352485 TCCCCATTCTTTTCAG-GATTAGGTAGA-A-AAACACAGTCTTCTCATTTGGATACATCATATTG
1 TCTCCATTCTTTTC-GTGATTAGGCA-ATATAAACACAGTCTTCTCATTAGGATACATCATATTG
* ** *
3352547 ATGCTTTGGTTTCGCAAGAAAGGCTTTT-TTCCCACCAATTTTTGTAAAGTCTAA-GTTCGTGCC
64 ATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTACACTAATTTTTGTAAAGTCTAAGGTTCGTGCC
* **
3352610 TCAAATGAGACAAACATGGATTCTAGTAACGG
129 TCAAATAAGACAAACATGGATTCTAGTAATAG
* * * * * * * *
3352642 TCTTCATTCATTTT-GTGATTAGGCACTATAAGCACATTCTCCTTATTAGGATAAATGATATTGA
1 TCTCCATTC-TTTTCGTGATTAGGCAATATAAACACAGTCTTCTCATTAGGATACATCATATTGA
* ** * * * * * * * * * *
3352706 TGATTTTCTTTTGCATGGAAATCTTTTATTTTC-CTTATTTTCCT-TAAAATCAAAGTTTAC--G
65 TGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTACACTAATTTT--TGTAAAGTCTAAGGTT-CGTG
* * * ** *
3352767 CCTTAAATAAGACAAGCATCGATTCCCGTAACAG
127 CCTCAAATAAGACAAACATGGATTCTAGTAATAG
* * ** * *** * * * *
3352801 TCTCTATTCTATTCAAGATT-GGGAAGCCAAA-A-TG-CTTGCCCTTCATTAGGATAAATGACAT
1 TCTCCATTCTTTTCGTGATTAGGCAATATAAACACAGTCTT---C-TCATTAGGATACATCATAT
* * * * * * * *
3352862 TGATACTTTGGTGTCCCAAGAAAAGCTTTTCTTTCCATTGA-TTTTGATAGAA-T-TAAAGTTTG
62 TGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTACACTAATTTTTG-TA-AAGTCTAAGGTTCG
* * * * * * *
3352924 T-CTCTTAAATATGACAAACATGAATACTATTAGTAA
125 TGC-CTCAAATAAGACAAACATGGATTCTAGTAATAG
* * * *** * *
3352960 TCCCCGTTGTTTTCAG-GATTAGGCCCCATGAACATAGTCTTCTCATTAGGATACATCATATTGA
1 TCTCCATTCTTTTC-GTGATTAGGCAATATAAACACAGTCTTCTCATTAGGATACATCATATTGA
* ** * *
3353024 TGCTTTGGTTTCGCAAGAAAGGCTTTT-TTCCCACCAATTTTTGTAAAGTCTAA-GTTCGTGTCT
65 TGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTACACTAATTTTTGTAAAGTCTAAGGTTCGTGCCT
* *
3353087 CAAATAAGGCAAACATAGATTCTAGTAAT-G
130 CAAATAAGACAAACATGGATTCTAGTAATAG
* * * * * * * *
3353117 ATCTTCATTCATTTT-GTGATTAGGCACTTTAAACACATTCTCCTCATTAGGATAAATGATTTTG
1 -TCTCCATTC-TTTTCGTGATTAGGCAATATAAACACAGTCTTCTCATTAGGATACATCATATTG
3353181 ATGCTTT
64 ATGCTTT
3353188 TCTTTTGCAT
Statistics
Matches: 3738, Mismatches: 1198, Indels: 733
0.66 0.21 0.13
Matches are distributed among these distances:
153 10 0.00
154 47 0.01
155 47 0.01
156 54 0.01
157 291 0.08
158 1335 0.36
159 1546 0.41
160 186 0.05
161 61 0.02
162 79 0.02
163 38 0.01
164 41 0.01
165 3 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (160 bp):
TCTCCATTCTTTTCGTGATTAGGCAATATAAACACAGTCTTCTCATTAGGATACATCATATTGAT
GCTTTGGTTTCGCAAGAAAAGCTTTTCTTTACACTAATTTTTGTAAAGTCTAAGGTTCGTGCCTC
AAATAAGACAAACATGGATTCTAGTAATAG
Found at i:3353936 original size:13 final size:13
Alignment explanation
Indices: 3353918--3353944 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
3353908 ACATTATGCT
3353918 TTGTATCGATACA
1 TTGTATCGATACA
3353931 TTGTATCGATACA
1 TTGTATCGATACA
3353944 T
1 T
3353945 GGACAATTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:3354019 original size:20 final size:20
Alignment explanation
Indices: 3353994--3354047 Score: 83
Period size: 20 Copynumber: 2.7 Consensus size: 20
3353984 CTACCACTGT
*
3353994 TTGTATCGATACATGGT-ACA
1 TTGTATCGATACATGATCA-A
3354014 TTGTATCGATACATGATCAA
1 TTGTATCGATACATGATCAA
3354034 TTGTATCGATACAT
1 TTGTATCGATACAT
3354048 TGCTTCCAAC
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 31 0.97
21 1 0.03
ACGTcount: A:0.31, C:0.15, G:0.17, T:0.37
Consensus pattern (20 bp):
TTGTATCGATACATGATCAA
Found at i:3356244 original size:51 final size:51
Alignment explanation
Indices: 3356188--3356373 Score: 241
Period size: 51 Copynumber: 3.6 Consensus size: 51
3356178 TAACTTTCTC
* *
3356188 AATTTTTCATAATCGGGGATACTCAAACCCCGGTTTTATTTCTAAAACACT
1 AATTTTTCACAATCGGGGATACTCCAACCCCGGTTTTATTTCTAAAACACT
*
3356239 AATTTTCCACAATCGGGGATACTCCAACCCCGGTTTTATTT-TCAAAACACT
1 AATTTTTCACAATCGGGGATACTCCAACCCCGGTTTTATTTCT-AAAACACT
* * * * * *
3356290 AA-TTTTCTATAATTGGGGATACTCCAACTCCGATTTTATTTCCAAAAACACC
1 AATTTTTC-ACAATCGGGGATACTCCAACCCCGGTTTTATTT-CTAAAACACT
*
3356342 AATTTTTCACAATCGAGGATACTCCAACCCCG
1 AATTTTTCACAATCGGGGATACTCCAACCCCG
3356374 TTAATCATCG
Statistics
Matches: 116, Mismatches: 14, Indels: 9
0.83 0.10 0.06
Matches are distributed among these distances:
50 5 0.04
51 77 0.66
52 29 0.25
53 5 0.04
ACGTcount: A:0.31, C:0.25, G:0.11, T:0.32
Consensus pattern (51 bp):
AATTTTTCACAATCGGGGATACTCCAACCCCGGTTTTATTTCTAAAACACT
Found at i:3356425 original size:28 final size:28
Alignment explanation
Indices: 3356356--3356426 Score: 101
Period size: 27 Copynumber: 2.6 Consensus size: 28
3356346 TTTCACAATC
3356356 GAGGATACTCCAACCCCGTTAATCATCG
1 GAGGATACTCCAACCCCGTTAATCATCG
**
3356384 G-GGATACTCCAACCCCGTT-ATTTTCG
1 GAGGATACTCCAACCCCGTTAATCATCG
3356410 AGAGGATACTCCAACCC
1 -GAGGATACTCCAACCC
3356427 TAGCTTTATT
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
26 5 0.13
27 19 0.49
28 15 0.38
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.23
Consensus pattern (28 bp):
GAGGATACTCCAACCCCGTTAATCATCG
Found at i:3356463 original size:79 final size:79
Alignment explanation
Indices: 3356380--3357217 Score: 1101
Period size: 79 Copynumber: 10.6 Consensus size: 79
3356370 CCCGTTAATC
* *
3356380 ATCGGGGATACTCCAACCCCGTTATTTTCGAGAGGATACTCCAACCCTAGCTTTATTCCTAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCTGGCTTTATTCCTAAAAT
*
3356445 AATGATTTCTCATA
66 ATTGATTTCTCATA
*
3356459 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGCTTTATTCCTAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCTGGCTTTATTCCTAAAAT
3356524 ATTGATTTCTCATA
66 ATTGATTTCTCATA
* * * * *
3356538 ATCGAGGATACTCCAACCCCATTA-TTTCAGAGGAGATACTCCAACCCCGGCTTTATTTCTAAAA
1 ATCGGGGATACTCCAACCCCGTTATTTTC-GAGGGGATACTCCAACCCTGGCTTTATTCCTAAAA
*
3356602 TATTGATTTCTCAAA
65 TATTGATTTCTCATA
* * * * *
3356617 ATCGGGAATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCTGGTTTTTTTTCTAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCTGGCTTTATTCCTAAAAT
*
3356682 ATTGATTTCTCACA
66 ATTGATTTCTCATA
* * **
3356696 ATCGGGGATACTCCAACCCCGTTATTTTTGAGGGGATACTCCAACCCCGATTTTATTCCTAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCTGGCTTTATTCCTAAAAT
*
3356761 ATTGATTTCTCACA
66 ATTGATTTCTCATA
* * * * *
3356775 ATCGGGGATACTCCAACCCTGTTATTTCCGAGAGGATACTCCAACCCCGACTTTATTCCTAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCTGGCTTTATTCCTAAAAT
3356840 ATTGATTTCTCATA
66 ATTGATTTCTCATA
* * *
3356854 ATCGGGGATACTCCAACCTCGTTATTTCCGAGGGGATACTCCAACCCCGGCTTTATTCCTAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCTGGCTTTATTCCTAAAAT
3356919 ATTGATTTCTCATA
66 ATTGATTTCTCATA
* * * * *
3356933 ATCGAGGATACTCCAACCTCGTTACTTCCGAGGGGATACTCCAA-CCTCGGCTTTATTTCTAAAA
1 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCT-GGCTTTATTCCTAAAA
*
3356997 TATTGATTTCTCAAA
65 TATTGATTTCTCATA
** * * *
3357012 ATCGGAAATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCTGGCTTTATTCCTAAAAT
*
3357077 ATTGATTTCTCACA
66 ATTGATTTCTCATA
* * ** *
3357091 ATCGGGGATACTCCAACCCTGTTATTTTCGCA-AGGATACTCCAACCCTGATTTTATT-TTCAAA
1 ATCGGGGATACTCCAACCCCGTTATTTTCG-AGGGGATACTCCAACCCTGGCTTTATTCCT-AAA
* ***
3357154 ACACCAATTT-TCTATA
64 ATATTGATTTCTC-ATA
** * * *
3357170 ATTAGGGATACTCCAACCCTGTTATTTCCAAGGGGATACTCCAACCCT
1 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCT
3357218 AATTTTATTT
Statistics
Matches: 685, Mismatches: 66, Indels: 16
0.89 0.09 0.02
Matches are distributed among these distances:
78 10 0.01
79 669 0.98
80 6 0.01
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.32
Consensus pattern (79 bp):
ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCTGGCTTTATTCCTAAAAT
ATTGATTTCTCATA
Found at i:3364120 original size:476 final size:472
Alignment explanation
Indices: 3363163--3365692 Score: 3055
Period size: 476 Copynumber: 5.3 Consensus size: 472
3363153 CACCCAAAAT
* * *
3363163 ATAGTCTTCTCATTAGGATACATCATATTGAAGCTTTGGTTTCACAAGAAAGGCTTTGTTCCCAC
1 ATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAC
** * * *
3363228 CAATTTTT-TAAAGTCTAAGTTTATGCCTCAAATAAGACAAATATGGATTCTAGTAATAACCTTC
66 CAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATAAGACAAACATGGATTCTAGTAATGATCTTC
* * *
3363292 ATTCATTTTTTTTGAATT-GGAACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATCA
131 ATTCA--TTTTGTG-ATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGA
* * * * * *
3363356 TTTTTTTTTGGCATTGAAAGCTTTTCTTTGCCCTACTTTCCTTTAAATCAAAGTTTATACCTTAA
193 TTTTCTTTT-GCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT-CCTTAA
* * * ** * * *
3363421 ATAAGAGAGGCAAT-GATTCTCACAATAGTCATTTATTCTTTCCAAGATTGGGAAGCCAAAACAC
256 ATAAGACAAGC-CTCGATTCTCGTAATAGTC-TCTATTCTTTTCAAGATTGGGAAGCC-AAA-AG
* * * *
3363485 ACATTCCTTTTATTAGGATCCATGACATTGATGCTTTGGTGTCGCAAAAAAAGCTTTAATTTCCA
317 ACATTCCTTTTATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTT-TTTTCCA
* * * * * * * *
3363550 CCGTTTCTGATAAAATGAAAGTTTGACTCTTAAATACGACAAGCATAAATACTTATACTAATCCT
381 CCGTTT-TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAC-CATACTAATCCC
* * *
3363615 CGTTCTTTTCGGGATTAGTCACCATAAAC
444 CATTCTTTTCAGGATTAGGCACCATAAAC
* * * * *
3363644 ATAGTCTTCTCATTAGGATACATTATATTGATTCTTTGGTTTCGCAAGAAGGGATTTTTTTCCAC
1 ATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAC
* * * * * *
3363709 CAATATTTGTAAAGTCTAAGCTCGTGCCTCAATTGAGACAAACATTGATTCTAGTCATGATCTTC
66 CAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATAAGACAAACATGGATTCTAGTAATGATCTTC
* * *
3363774 ATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGATAAATAACATTGATGATTT
131 ATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTT
* * * *
3363839 TCTTTTGTAAGGAAAT-TTGTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCCATTGAATA
196 TCTTTTGCATGGAAATCTT-TTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCC-TTAAATA
* * * * *
3363903 AGACAAGCCTCGATTTTCATAAAAGGCTCTATTCTTTTCAAGATTGGGAAGCCAAAAGACATTCT
259 AGACAAGCCTCGATTCTCGTAATAGTCTCTATTCTTTTCAAGATTGGGAAGCCAAAAGACATTCC
* * * * * *
3363968 TTTTATTGGGATACAAGATATTGATGCTTTGCTATAGCAAGAAAAGCCTTTTTTTCCTCCGCTTT
324 TTTTATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAG-CTTTTTTTCCACCG-TTT
* * *
3364033 TTATAGAATCAATGTTTGTCTCTTAAATAAGACAAACATGAATGGCCATACTAATCCCCATTCTT
387 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT-ACCATACTAATCCCCATTCTT
* **
3364098 TTCAAGATTAGGCAATATAAAC
451 TTCAGGATTAGGCACCATAAAC
* * * * * * *
3364120 ATAGTCTTCTCATTATGATACATCATTTTGATGTTTTGGTTTCACAAGAAAAGCTTTTTTCTCAT
1 ATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAC
* *
3364185 TAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAT-AGTCTT
66 CAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATAAGACAAACATGGATTCTAGTAATGA-TCTT
* *
3364249 CATTCATTTTGTGGTTAGGCACTATAAGCACATTCTCCTCATTAGGATAAATGATATTGATGATT
130 CATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATT
* * * * *
3364314 TTCTTTTGCATGAAAATATTTTCTTTACCCTATTTTCCTTAAAATCAAGGCTCATCCCTTAAATA
195 TTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT-CCTTAAATA
* * * *
3364379 AGACCAGCCTCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAACCAAAAGACATACC
259 AGACAAGCCTCGATTCTCGTAATAGTCTCTATTCTTTTCAAGATTGGGAAGCCAAAAGACATTCC
*
3364444 TTCT-TTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTT
324 TTTTATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTT-TTTCCACCG-TTT
* * * **
3364508 TGATAGAATTAATA-TTTGTCTCTTAAATAAAAGAAACATGAATGGTCATACTAATCCCCATTCT
387 TGATAGAATCAA-AGTTTGTCTCTTAAATAAGACAAACATGAAT-ACCATACTAATCCCCATTCT
* * *
3364572 TTTCAGGATTAGGTA-GAAAAAC
450 TTTCAGGATTAGGCACCATAAAC
* * *
3364594 ACAGTCTTCTCATTTGGATACATCATATTGATGCTTTGATTTCGCAAGAAAGGCTTTTTTCCCAC
1 ATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAC
* * *
3364659 CAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAACGGTCTTC
66 CAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATAAGACAAACATGGATTCTAGTAATGATCTTC
* *
3364724 ATTCATTTTGTGATTAGGCACTATAAGCACATTCTCCTTATTAGGATAAATGATATTGATGATTT
131 ATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTT
* * * *
3364789 TCTTTTGCATGGAAATCTTTTATTTTCCCTATTTTCCTTAAAATCAAAGTTTACGCCTTAAATAA
196 TCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCA-TCCTTAAATAA
* * * *
3364854 GACAAGCATCGATTCCCGTAACAGTCTCTATTCTATTCAAGATTGGGAAGCCAAAATG-C-TTGC
260 GACAAGCCTCGATTCTCGTAATAGTCTCTATTCTTTTCAAGATTGGGAAGCCAAAA-GACATT-C
* * * * *
3364917 CTTTCATTAGGATA-AATGACATTGATACTTAGGTGTCCCAAGAAAAGCTTTTCTTTCCACTGAT
323 CTTTTATTAGGATACAA-GACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTT-TTTCCACCG-T
* * * * * *
3364981 TTTGATAGAATTAAAGTTTGTCTCTTAAATATGACAAACATGAATACTATTAGTAATCCCCGTTG
385 TTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACCA-TACTAATCCCCATTC
* *
3365046 TTTTCAGGATTAGGCCCCATGAAC
449 TTTTCAGGATTAGGCACCATAAAC
3365070 ATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAC
1 ATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAC
* * *
3365135 CAATTTTTGTAAAGTCTAAGTTCGTGTCTCAAATAAGGCAAACATAGATTCTAGTAATGATCTTC
66 CAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATAAGACAAACATGGATTCTAGTAATGATCTTC
* * *
3365200 ATTCATTTTGTGATTAGGCACTTTAAACACATTCTCCTCATTAGGATAAATGATTTTGATGCTTT
131 ATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTT
* *
3365265 TCTTTTGCATGGTAATCTTTTCTTTGCCCTA-TTTCCTT-AAATCAATGTTCATACCTTAAATAA
196 TCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT-CCTTAAATAA
* * * * **
3365328 AACAA-CCATTGATTCTCGTAATAGTCTCAATTC-TTTCAAGATTGGGAAGCCAAAACATGTTCC
260 GACAAGCC-TCGATTCTCGTAATAGTCTCTATTCTTTTCAAGATTGGGAAGCCAAAAGACATTCC
* * * ** * * * *
3365391 CTTCATTAGGATGCTTGACATTGAAGCTTTGCTATCGCAAGAAAGGCTTTTTTTCCACCGTTTTG
324 TTTTATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTCCACCGTTTT-
* * **
3365456 GATAGAATCAAAATTTGTCTCTTAAGTAAGACAAACATGAATACTCATACTAATCCATATT-TTT
388 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAC-CATACTAATCCCCATTCTTT
3365520 TCAAGG-TTAGGCACCATAAAC
452 TC-AGGATTAGGCACCATAAAC
* * * * * * *
3365541 TTAGTATTCTCATTATGATACATCATATTGATGCTTTTGTTTTGCAAGAACA-GTTTTTTTCCTA
1 ATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAA-AGGCTTTTTTCCCA
* ** *
3365605 CCAATTTTCT-TAAAGTCTAAGTTTGTGCCTCAAATAAGATGAACATGGATTCTAGTAATGATTT
65 CCAATTTT-TGTAAAGTCTAAGTTCGTGCCTCAAATAAGACAAACATGGATTCTAGTAATGATCT
3365669 TCATTCATTTTGTGATTAGGCACT
129 TCATTCATTTTGTGATTAGGCACT
3365693 GTTAGGATCT
Statistics
Matches: 1770, Mismatches: 247, Indels: 74
0.85 0.12 0.04
Matches are distributed among these distances:
471 156 0.09
472 63 0.04
473 65 0.04
474 351 0.20
475 242 0.14
476 615 0.35
477 15 0.01
478 29 0.02
479 64 0.04
480 55 0.03
481 64 0.04
482 51 0.03
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (472 bp):
ATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAC
CAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATAAGACAAACATGGATTCTAGTAATGATCTTC
ATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTT
TCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTTAAATAAG
ACAAGCCTCGATTCTCGTAATAGTCTCTATTCTTTTCAAGATTGGGAAGCCAAAAGACATTCCTT
TTATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTCCACCGTTTTGAT
AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACCATACTAATCCCCATTCTTTTCAG
GATTAGGCACCATAAAC
Found at i:3364329 original size:158 final size:159
Alignment explanation
Indices: 3363652--3365269 Score: 527
Period size: 158 Copynumber: 10.2 Consensus size: 159
3363642 ACATAGTCTT
* * ** * ** * * *
3363652 CTCATTAGGATACATTATATTGATTCTTTGGTTTCGCAAGAAGGGATTTT-TTTCCACCAATATT
1 CTCATTAGGATAAATGATATTGATGATTTGCTTTCGCAAGAAAAGCTTTTCTTTACACCAATTTT
* * * * * *
3363716 TGTAAAGTCTAA-GCTCGTGCCTCAATTGAGACAAACATTGATTCTAGTCAT-GATCTTCATTCA
66 TGTAAAGTCTAAGGTTCGTGCCTCAAATAAGACAAACATGGATTCTAGTAATAG-TCTCCATTC-
*
3363779 TTTTGTGATTAGGCACTATAAA-CACATTCTC
129 TTTTGAGATTAGGCACTA-AAAGCACATTCTC
* * * * * * * * * *
3363810 CTTATTAGGATAAATAACATTGATGATTTTCTTTTGTAAGGAAA-TTTGTTCTTTGC-CCTATTT
1 CTCATTAGGATAAATGATATTGATGATTTGCTTTCGCAAGAAAAGCTT-TTCTTTACACCAATTT
* * * * ** * * * * * * *
3363873 TCCT-TAAAATC-AAAGCTCAT-CCATTGAATAAGACAAGCCTCGATTTTCA-TAAAAGGCTCTA
65 T--TGTAAAGTCTAAGGTTCGTGCC-TCAAATAAGACAAACATGGATTCT-AGTAATAGTCTCCA
* * * * *
3363934 TTCTTTTCAAGATTGGGAAGCCAAAAG-ACATTCTT
126 TTCTTTT-GAGATTAGGCA-CTAAAAGCACATTCTC
* * * * * * * * **
3363969 TTTATTGGGATACAA-GATATTGATGCTTTGCTATAGCAAGAAAAGCCTTTT-TTTCCTCCGCTT
1 CTCATTAGGATA-AATGATATTGATGATTTGCTTTCGCAAGAAAAG-CTTTTCTTTACACCAATT
* * * * * * * * * *
3364032 TTTATAGAA-TC-AATGTTTGT-CTCTTAAATAAGACAAACATGAATGGCCA-TACTAATCCCCA
64 TTTGTA-AAGTCTAAGGTTCGTGC-CTCAAATAAGACAAACATGGAT-TCTAGTAATAGTCTCCA
* * * * *
3364093 TTCTTTTCAAGATTAGGCAATATAAA-CATAGTCTT
126 TTCTTTT-GAGATTAGGCACTA-AAAGCACATTCTC
* * * * * * * **
3364128 CTCATTATGATACATCATTTTGATGTTTTGGTTTCACAAGAAAAGCTTTT-TTCT-CATTAATTT
1 CTCATTAGGATAAATGATATTGATGATTTGCTTTCGCAAGAAAAGCTTTTCTT-TACACCAATTT
* *
3364191 TTGTAAAGTCTAA-GTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATAGTCTTCATTCA
65 TTGTAAAGTCTAAGGTTCGTGCCTCAAATAAGACAAACATGGATTCTAGTAATAGTCTCCATTC-
* * *
3364255 TTTTGTGGTTAGGCACTATAAGCACATTCTC
129 TTTTGAGATTAGGCACTAAAAGCACATTCTC
* * * ** *
3364286 CTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATATTTTCTTTAC-CCTATTTT
1 CTCATTAGGATAAATGATATTGATGATTTGCTTTCGCAAGAAAAGCTTTTCTTTACACCAATTTT
* * * * * * * * * *
3364350 CCT-TAAAATC-AAGGCTCATCCCTTAAATAAGACCAGCCTCGATTCTCGTAATAGTCTCCATTC
66 --TGTAAAGTCTAAGGTTCGTGCCTCAAATAAGACAAACATGGATTCTAGTAATAGTCTCCATTC
* * * * *
3364413 TTTTCAAGATTGGGAAACCAAAAG-ACATAC-C
129 TTTT-GAGATTAGG-CACTAAAAGCACATTCTC
* * * * * * * *
3364444 TTCTTTAGGATACAA-GACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACC-GTTT
1 CTCATTAGGATA-AATGATATTGATGATTTGCTTTCGCAAGAAAAGCTTTTCTTTACACCAATTT
** * * * * * * * *
3364507 TTGATAGAA-T-TAATATTTGT-CTCTTAAATAAAAGAAACATGAATGGTC-A-TACTAATCCCC
65 TTG-TA-AAGTCTAAGGTTCGTGC-CTCAAATAAGACAAACATGGAT--TCTAGTAATAGTCTCC
* * * * * *
3364567 ATTCTTTTCAGGATTAGGTA-GAAAAACACAGTCTT
125 ATTCTTTTGA-GATTAGGCACTAAAAGCACATTCTC
* * * * * * **
3364602 CTCATTTGGATACATCATATTGATGCTTTGATTTCGCAAGAAAGGCTTTT-TTCCCACCAATTTT
1 CTCATTAGGATAAATGATATTGATGATTTGCTTTCGCAAGAAAAGCTTTTCTTTACACCAATTTT
* ** *
3364666 TGTAAAGTCTAA-GTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAACGGTCTTCATTCAT
66 TGTAAAGTCTAAGGTTCGTGCCTCAAATAAGACAAACATGGATTCTAGTAATAGTCTCCATTC-T
* *
3364730 TTTGTGATTAGGCACTATAAGCACATTCTC
130 TTTGAGATTAGGCACTAAAAGCACATTCTC
* * * * * * * * *
3364760 CTTATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTATTTTC-CCTATTTT
1 CTCATTAGGATAAATGATATTGATGATTTGCTTTCGCAAGAAAAGCTTTTCTTTACACCAATTTT
* * * * * * ** * *
3364824 CCT-TAAAATCAAAGTTTAC--GCCTTAAATAAGACAAGCATCGATTCCCGTAACAGTCTCTATT
66 --TGTAAAGTCTAAGGTT-CGTGCCTCAAATAAGACAAACATGGATTCTAGTAATAGTCTCCATT
** * * *
3364886 CTATTCAAGATTGGGAAGCCAAAATG--C-TTGC-C
128 CT-TTTGAGATTAGGCA-CTAAAA-GCACATT-CTC
* * * * * * * **
3364918 TTTCATTAGGATAAATGACATTGAT-ACTTAGGTGTCCCAAGAAAAGCTTTTCTTTCCACTGA-T
1 -CTCATTAGGATAAATGATATTGATGA-TTTGCTTTCGCAAGAAAAGCTTTTCTTTACACCAATT
* * * * * * * * * * *
3364981 TTTGATAGAA-T-TAAAGTTTGT-CTCTTAAATATGACAAACATGAATACTATTAGTAATCCCCG
64 TTTG-TA-AAGTCTAAGGTTCGTGC-CTCAAATAAGACAAACATGGATTCTAGTAATAGTCTCCA
* * * * * * * *
3365043 TTGTTTTCAGGATTAGGCCCCATGAA-CATAGTCTT
126 TTCTTTTGA-GATTAGGCACTA-AAAGCACATTCTC
* * * * * **
3365078 CTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTT-TTCCCACCAATTTT
1 CTCATTAGGATAAATGATATTGATGATTTGCTTTCGCAAGAAAAGCTTTTCTTTACACCAATTTT
* * * *
3365142 TGTAAAGTCTAA-GTTCGTGTCTCAAATAAGGCAAACATAGATTCTAGTAAT-GATCTTCATTCA
66 TGTAAAGTCTAAGGTTCGTGCCTCAAATAAGACAAACATGGATTCTAGTAATAG-TCTCCATTC-
* *
3365205 TTTTGTGATTAGGCACTTTAAA-CACATTCTC
129 TTTTGAGATTAGGCAC-TAAAAGCACATTCTC
* * *
3365236 CTCATTAGGATAAATGATTTTGATGCTTTTCTTT
1 CTCATTAGGATAAATGATATTGATGATTTGCTTT
3365270 TGCATGGTAA
Statistics
Matches: 1036, Mismatches: 335, Indels: 178
0.67 0.22 0.11
Matches are distributed among these distances:
155 2 0.00
156 8 0.01
157 67 0.06
158 471 0.45
159 445 0.43
160 39 0.04
161 4 0.00
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (159 bp):
CTCATTAGGATAAATGATATTGATGATTTGCTTTCGCAAGAAAAGCTTTTCTTTACACCAATTTT
TGTAAAGTCTAAGGTTCGTGCCTCAAATAAGACAAACATGGATTCTAGTAATAGTCTCCATTCTT
TTGAGATTAGGCACTAAAAGCACATTCTC
Found at i:3366013 original size:13 final size:13
Alignment explanation
Indices: 3365995--3366021 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
3365985 ACATTATGCT
3365995 TTGTATCGATACA
1 TTGTATCGATACA
3366008 TTGTATCGATACA
1 TTGTATCGATACA
3366021 T
1 T
3366022 GGACAATTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:3366096 original size:20 final size:20
Alignment explanation
Indices: 3366071--3366124 Score: 83
Period size: 20 Copynumber: 2.7 Consensus size: 20
3366061 CTACCACTGT
*
3366071 TTGTATCGATACATGGT-ACA
1 TTGTATCGATACATGATCA-A
3366091 TTGTATCGATACATGATCAA
1 TTGTATCGATACATGATCAA
3366111 TTGTATCGATACAT
1 TTGTATCGATACAT
3366125 TACTTCCAAC
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 31 0.97
21 1 0.03
ACGTcount: A:0.31, C:0.15, G:0.17, T:0.37
Consensus pattern (20 bp):
TTGTATCGATACATGATCAA
Found at i:3368320 original size:51 final size:52
Alignment explanation
Indices: 3368264--3368399 Score: 204
Period size: 51 Copynumber: 2.6 Consensus size: 52
3368254 TTAAGTTTCT
* *
3368264 CAATTTTTCATAATCGGGGATACTCCAACCCCGGTTTTATTTTC-AAAACAC
1 CAATTTTTCATAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAAACAC
* *
3368315 CAA-TTTTCTATAATTGGGGATACTCCAACTCCGATTTTATTTCCAAAAACAC
1 CAATTTTTC-ATAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAAACAC
*
3368367 CAATTTTTCACAATCGGGGATACTCCAACCCCG
1 CAATTTTTCATAATCGGGGATACTCCAACCCCG
3368400 TTAATCATCG
Statistics
Matches: 75, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
50 5 0.07
51 34 0.45
52 31 0.41
53 5 0.07
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.32
Consensus pattern (52 bp):
CAATTTTTCATAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAAACAC
Found at i:3368451 original size:28 final size:27
Alignment explanation
Indices: 3368379--3368453 Score: 107
Period size: 27 Copynumber: 2.7 Consensus size: 27
3368369 ATTTTTCACA
3368379 ATCGGGGATACTCCAACCCCGTTAATC
1 ATCGGGGATACTCCAACCCCGTTAATC
*
3368406 ATCGGGGATACTCCAACCCCGTT-ATT
1 ATCGGGGATACTCCAACCCCGTTAATC
*
3368432 TTCGAGAGGATACTCCAACCCC
1 ATCG-G-GGATACTCCAACCCC
3368454 AGCTTTATTC
Statistics
Matches: 44, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
26 5 0.11
27 24 0.55
28 15 0.34
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.23
Consensus pattern (27 bp):
ATCGGGGATACTCCAACCCCGTTAATC
Found at i:3368489 original size:79 final size:79
Alignment explanation
Indices: 3368406--3369242 Score: 1140
Period size: 79 Copynumber: 10.6 Consensus size: 79
3368396 CCCGTTAATC
* * *
3368406 ATCGGGGATACTCCAACCCCGTTATTTTCGAGAGGATACTCCAACCCCAGCTTTATTCCTAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGCTTTATTCCTAAAAT
*
3368471 AATGATTTCTCATA
66 ATTGATTTCTCATA
*
3368485 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGCTTTATTCCTAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGCTTTATTCCTAAAAT
3368550 ATTGATTTCTCATA
66 ATTGATTTCTCATA
* * * * *
3368564 ATCGAGGATACTCCAACCCCATTATTTCTGAGGAGATACTCCAACCCCGGCTTTATTTCTAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGCTTTATTCCTAAAAT
*
3368629 ATTGATTTCTCAAA
66 ATTGATTTCTCATA
* * ** * * *
3368643 ATCGGGAATACTCCAACCCCGTTATTTCCGAAGGGATACTCCAACCCTAGTTTTTTTTCTAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGCTTTATTCCTAAAAT
*
3368708 ATTGATTTCTCACA
66 ATTGATTTCTCATA
* ** **
3368722 ATCAGGGATACTCCAACCCCGTTATTTTTGAGGGGATACTCCAACCCCGATTTTATTCCTAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGCTTTATTCCTAAAAT
*
3368787 ATTGATTTCTCACA
66 ATTGATTTCTCATA
* * *
3368801 ATCGGGGATACTCCAACCCTGTTATTTCCGAGAGGATACTCCAACCCCGACTTTATTCCTAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGCTTTATTCCTAAAAT
3368866 ATTGATTTCTCATA
66 ATTGATTTCTCATA
*
3368880 ATCGGGGATACTCCAACCTCGTTATTTCCGAGGGGATACTCCAACCCCGGCTTTATTCCTAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGCTTTATTCCTAAAAT
3368945 ATTGATTTCTCATA
66 ATTGATTTCTCATA
* * *
3368959 ATCGAGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGGCTTTATTTCTAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGCTTTATTCCTAAAAT
*
3369024 ATTGATTTCTCAAA
66 ATTGATTTCTCATA
** * *
3369038 ATCGGAAATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGCTTTATTCCTAAAAT
*
3369103 ATTGATTTCTCACA
66 ATTGATTTCTCATA
* * ** * ** *
3369117 ATCGGGGATACTCCAACCCTGTTATTTTCGCA-ACGATACTCCAACCCTGATTTTATT-TTCAAA
1 ATCGGGGATACTCCAACCCCGTTATTTCCG-AGGGGATACTCCAACCCCGGCTTTATTCCT-AAA
* ***
3369180 ACACCAATTT-TCTATA
64 ATATTGATTTCTC-ATA
** * *
3369196 ATTAGGGATACTCCAACCCTGTTATTTCCAAGGGGATACTCCAACCC
1 ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCC
3369243 TGATTTTATT
Statistics
Matches: 681, Mismatches: 73, Indels: 8
0.89 0.10 0.01
Matches are distributed among these distances:
78 4 0.01
79 676 0.99
80 1 0.00
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (79 bp):
ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGCTTTATTCCTAAAAT
ATTGATTTCTCATA
Found at i:3371365 original size:4 final size:4
Alignment explanation
Indices: 3371356--3371384 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
3371346 TATTTTGAGG
3371356 TATT TATT TATT TATT TATT TATT TATT T
1 TATT TATT TATT TATT TATT TATT TATT T
3371385 GTTTTGTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TATT
Found at i:3381676 original size:1 final size:1
Alignment explanation
Indices: 3381670--3381752 Score: 67
Period size: 1 Copynumber: 83.0 Consensus size: 1
3381660 CTTCTCTTCT
* * ** * * * *
3381670 AAAAAAAAAAAAACAAAAACAAAAGCAAAAAATAAAAATAAAAAAAAATAAAAAAAAACAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * *
3381735 AACAAAACAAAGAAAAAA
1 AAAAAAAAAAAAAAAAAA
3381753 GAGAGAAAAG
Statistics
Matches: 61, Mismatches: 21, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
1 61 1.00
ACGTcount: A:0.87, C:0.07, G:0.02, T:0.04
Consensus pattern (1 bp):
A
Found at i:3381750 original size:14 final size:14
Alignment explanation
Indices: 3381670--3381752 Score: 80
Period size: 14 Copynumber: 5.6 Consensus size: 14
3381660 CTTCTCTTCT
3381670 AAAAAAAAAAAAAC
1 AAAAAAAAAAAAAC
3381684 AAAAACAAAAGCAAAA-
1 AAAAA-AAAA--AAAAC
3381700 AATAAAAATAAAAAA-
1 AA-AAAAA-AAAAAAC
*
3381715 AAATAAAAAAAAAC
1 AAAAAAAAAAAAAC
*
3381729 AAAAAAAACAAAAC
1 AAAAAAAAAAAAAC
3381743 AAAGAAAAAA
1 AAA-AAAAAA
3381753 GAGAGAAAAG
Statistics
Matches: 58, Mismatches: 4, Indels: 13
0.77 0.05 0.17
Matches are distributed among these distances:
13 6 0.10
14 24 0.41
15 15 0.26
16 4 0.07
17 9 0.16
ACGTcount: A:0.87, C:0.07, G:0.02, T:0.04
Consensus pattern (14 bp):
AAAAAAAAAAAAAC
Found at i:3381752 original size:39 final size:37
Alignment explanation
Indices: 3381670--3381752 Score: 94
Period size: 39 Copynumber: 2.2 Consensus size: 37
3381660 CTTCTCTTCT
* ** *
3381670 AAAAAAAAAAAAACAAAAACAAAAGCAAAAAATAAAA
1 AAAAAAAAAAAAAAAAAAACAAAAAAAAAAAACAAAA
*
3381707 ATAAAAAAAAATAAAAAAAAACAAAAAAAACAAAACAAAG
1 A-AAAAAAAAA-AAAAAAAAACAAAAAAAA-AAAACAAAA
3381747 AAAAAA
1 AAAAAA
3381753 GAGAGAAAAG
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
37 1 0.03
38 9 0.24
39 20 0.53
40 8 0.21
ACGTcount: A:0.87, C:0.07, G:0.02, T:0.04
Consensus pattern (37 bp):
AAAAAAAAAAAAAAAAAAACAAAAAAAAAAAACAAAA
Found at i:3381769 original size:10 final size:9
Alignment explanation
Indices: 3381670--3381769 Score: 57
Period size: 8 Copynumber: 11.2 Consensus size: 9
3381660 CTTCTCTTCT
3381670 AAAAAAAA-
1 AAAAAAAAG
*
3381678 AAAAACAA-
1 AAAAAAAAG
*
3381686 AAACAAAAG
1 AAAAAAAAG
*
3381695 CAAAAAATA-
1 -AAAAAAAAG
*
3381704 AAAATAAA-
1 AAAAAAAAG
*
3381712 AAAAAATA-
1 AAAAAAAAG
*
3381720 AAAAAAAAC
1 AAAAAAAAG
*
3381729 AAAAAAAAC
1 AAAAAAAAG
*
3381738 AAAACAAAG
1 AAAAAAAAG
3381747 AAAAAAGAGAG
1 AAAAAA-A-AG
3381758 AAAAGAAAAG
1 AAAA-AAAAG
3381768 AA
1 AA
3381770 CCTGCTAAAG
Statistics
Matches: 73, Mismatches: 13, Indels: 10
0.76 0.14 0.10
Matches are distributed among these distances:
8 32 0.44
9 21 0.29
10 11 0.15
11 7 0.10
12 2 0.03
ACGTcount: A:0.84, C:0.06, G:0.07, T:0.03
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:3382808 original size:55 final size:55
Alignment explanation
Indices: 3382724--3383322 Score: 729
Period size: 55 Copynumber: 10.5 Consensus size: 55
3382714 CTCCTTCCGC
3382724 TTTT-CAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
1 TTTTCCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
* * * *
3382778 TTTTCTAGTCCTCAAAGAGCAGGACACCTTTTAAAGCACACACAAGTTGGTGGCA
1 TTTTCCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
*
3382833 TTTTCCAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCA
1 TTTTCCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
3382888 TTTTCCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCA
1 TTTTCCAGTCCTCAAAGAGCAGGACGCCTT-T-C----AAAGCCCACACAAGTTGGTGGCA
*
3382949 CTTTT-CAGTCTTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
1 -TTTTCCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
* * *
3383004 TTTTCCAGTCCTCAAAGAGCAGGACTCCTTTTAAAGCCCACACAAGTTTGTGGCA
1 TTTTCCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
* * * *
3383059 TTTTTCAATCCTTAAAGAGCAGGACGCCTCTT-AAAGCCCACACAAGTCGGTGGCA
1 TTTTCCAGTCCTCAAAGAGCAGGACGCCT-TTCAAAGCCCACACAAGTTGGTGGCA
* * *
3383114 TTTTCCAGTCCTCAAAGAGAAGGATGCTTTTTCTTTTCAAAGCCCACACAAGTGGGTGGCA
1 TTTTCCAGTCCTCAAAGAGCAGGACGC-----C-TTTCAAAGCCCACACAAGTTGGTGGCA
* *
3383175 TTTTCTAGTCTTCAAAGAGCAGGACGCCTTTTCTTTCAAAGCCCACACAAGTTGGTGGCA
1 TTTTCCAGTCCTCAAAGAGCAGGACG-C----CTTTCAAAGCCCACACAAGTTGGTGGCA
* *
3383235 TTTTCCAGTCCTCAAAAAGCAGGACGCCTTCTCCTTTTAAAGCCCACATAAGTTGGTGGCA
1 TTTTCCAGTCCTCAAAGAGCAGGACGCCTT-T-C----AAAGCCCACACAAGTTGGTGGCA
* * *
3383296 -CTTCCTAGTCCTCAAAAAGCAAGACGC
1 TTTTCC-AGTCCTCAAAGAGCAGGACGC
3383323 TCTCTCCTTT
Statistics
Matches: 484, Mismatches: 36, Indels: 43
0.86 0.06 0.08
Matches are distributed among these distances:
54 8 0.02
55 268 0.55
56 4 0.01
57 1 0.00
59 2 0.00
60 57 0.12
61 139 0.29
62 5 0.01
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (55 bp):
TTTTCCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
Found at i:3382891 original size:27 final size:27
Alignment explanation
Indices: 3382806--3382891 Score: 64
Period size: 27 Copynumber: 3.1 Consensus size: 27
3382796 GCAGGACACC
*
3382806 TTTTAAAGCACACACAAGTTGGTGGCA
1 TTTTAAAGCCCACACAAGTTGGTGGCA
** * * * ** ** *
3382833 TTTTCCAGTCCTCAAAGAGCAGGACGCC
1 TTTTAAAGCCCACACA-AGTTGGTGGCA
3382861 TTTTAAAGCCCACACAAGTTGGTGGCA
1 TTTTAAAGCCCACACAAGTTGGTGGCA
3382888 TTTT
1 TTTT
3382892 CCAGTCCTCA
Statistics
Matches: 37, Mismatches: 21, Indels: 2
0.62 0.35 0.03
Matches are distributed among these distances:
27 20 0.54
28 17 0.46
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (27 bp):
TTTTAAAGCCCACACAAGTTGGTGGCA
Found at i:3383500 original size:55 final size:54
Alignment explanation
Indices: 3383342--3383966 Score: 705
Period size: 55 Copynumber: 11.0 Consensus size: 54
3383332 TCGCCTTTTT
* * ** *
3383342 GTCCTCAAAGAGCAGGATGCCTTTTAAAGCCCACACAAGCCGGTGGCACTTTCA
1 GTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCA
3383396 GTCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCA
1 GTCCTCAAAGAGCAGGACGCCTT-T-C----AAAGCCCACACAAGTTGGTGGCA-TTTTCA
*
3383457 GTCTTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCA
1 GTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTT-CA
* *
3383512 GTCCTCAAAGAGCAGGATGCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTTCA
1 GTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCA
* * *
3383567 ATCCTCAAAGAGCAGGACGCCTCTT-GAAGCCCACACAAGTGGGTGGCATTTTCCA
1 GTCCTCAAAGAGCAGGACGCCT-TTCAAAGCCCACACAAGTTGGTGGCATTTT-CA
* *
3383622 GTCCTCAAAGAGCCGGACACCTTTTCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCA
1 GTCCTCAAAGAGCAGGAC-GC----CTTTCAAAGCCCACACAAGTTGGTGGCATTTT-CA
* *
3383682 ATCGTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCA
1 GTCCTCAAAGAGCAGGACGCCTT-T-C----AAAGCCCACACAAGTTGGTGGCA-TTTTCA
*
3383743 GTCTTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCA
1 GTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTT-CA
* *
3383798 GTCCTCAAAGAGCAGGACTCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTTCA
1 GTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCA
* * * *
3383853 ATCCTTAAAGAGCAGGACGCCTCTT-GAAGCCCACACAAGTCGGTGGCATTTTCCA
1 GTCCTCAAAGAGCAGGACGCCT-TTCAAAGCCCACACAAGTTGGTGGCATTTT-CA
* * *
3383908 GTCCTCAAAGAGAAGGATGCTTTTTCTTTTCAAAGCCCACACAAGTCGGTGGCATTTTC
1 GTCCTCAAAGAGCAGGACGC-----C-TTTCAAAGCCCACACAAGTTGGTGGCATTTTC
3383967 CTCTTTCTTT
Statistics
Matches: 499, Mismatches: 37, Indels: 64
0.83 0.06 0.11
Matches are distributed among these distances:
54 38 0.08
55 265 0.53
56 14 0.03
57 1 0.00
59 5 0.01
60 72 0.14
61 100 0.20
62 4 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (54 bp):
GTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCA
Found at i:3383563 original size:27 final size:27
Alignment explanation
Indices: 3383482--3383563 Score: 67
Period size: 27 Copynumber: 3.0 Consensus size: 27
3383472 GACGCCTTTC
3383482 AAAGCCCACACAAGTTGGTGGCATTTT
1 AAAGCCCACACAAGTTGGTGGCATTTT
** * * * ** *
3383509 CCAGTCCTCAAAGAGCAGGAT-GCCTTTT
1 AAAGCCCACACA-AGTTGG-TGGCATTTT
3383537 AAAGCCCACACAAGTTGGTGGCATTTT
1 AAAGCCCACACAAGTTGGTGGCATTTT
3383564 TCAATCCTCA
Statistics
Matches: 36, Mismatches: 16, Indels: 6
0.62 0.28 0.10
Matches are distributed among these distances:
26 1 0.03
27 17 0.47
28 17 0.47
29 1 0.03
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (27 bp):
AAAGCCCACACAAGTTGGTGGCATTTT
Found at i:3383912 original size:286 final size:286
Alignment explanation
Indices: 3383362--3383967 Score: 1063
Period size: 286 Copynumber: 2.1 Consensus size: 286
3383352 AGCAGGATGC
* * * *
3383362 CTTTTAAAGCCCACACAAGCCGGTGGCACTTT-CAGTCCTCAAAGAGCAGGACGCCTTCTCCTTT
1 CTTTCAAAGCCCACACAAGTCGGTGGCATTTTCCAATCCTCAAAGAGCAGGACGCCTTCTCCTTT
3383426 TAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCTTCAAAGAGCAGGACGCCTTTCAAAGCCCAC
66 TAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCTTCAAAGAGCAGGACGCCTTTCAAAGCCCAC
3383491 ACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGATGCCTTTTAAAGCCCACACAAGTTGGT
131 ACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGATGCCTTTTAAAGCCCACACAAGTTGGT
*
3383556 GGCATTTTTCAATCCTCAAAGAGCAGGACGCCTCTTGAAGCCCACACAAGTGGGTGGCATTTTCC
196 GGCATTTTTCAATCCTCAAAGAGCAGGACGCCTCTTGAAGCCCACACAAGTCGGTGGCATTTTCC
**
3383621 AGTCCTCAAAGAGCCGGACACCTTTT
261 AGTCCTCAAAGAGAAGGACACCTTTT
* *
3383647 CTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAATCGTCAAAGAGCAGGACGCCTTCTCCTTT
1 CTTTCAAAGCCCACACAAGTCGGTGGCATTTTCCAATCCTCAAAGAGCAGGACGCCTTCTCCTTT
3383712 TAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCTTCAAAGAGCAGGACGCCTTTCAAAGCCCAC
66 TAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCTTCAAAGAGCAGGACGCCTTTCAAAGCCCAC
3383777 ACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACT-CCTTTTAAAGCCCACACAAGTTGG
131 ACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGA-TGCCTTTTAAAGCCCACACAAGTTGG
*
3383841 TGGCATTTTTCAATCCTTAAAGAGCAGGACGCCTCTTGAAGCCCACACAAGTCGGTGGCATTTTC
195 TGGCATTTTTCAATCCTCAAAGAGCAGGACGCCTCTTGAAGCCCACACAAGTCGGTGGCATTTTC
** *
3383906 CAGTCCTCAAAGAGAAGGATGCTTTTT
260 CAGTCCTCAAAGAGAAGGACACCTTTT
3383933 CTTTTCAAAGCCCACACAAGTCGGTGGCATTTTCC
1 C-TTTCAAAGCCCACACAAGTCGGTGGCATTTTCC
3383968 TCTTTCTTTC
Statistics
Matches: 304, Mismatches: 14, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
285 28 0.09
286 243 0.80
287 33 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (286 bp):
CTTTCAAAGCCCACACAAGTCGGTGGCATTTTCCAATCCTCAAAGAGCAGGACGCCTTCTCCTTT
TAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCTTCAAAGAGCAGGACGCCTTTCAAAGCCCAC
ACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGATGCCTTTTAAAGCCCACACAAGTTGGT
GGCATTTTTCAATCCTCAAAGAGCAGGACGCCTCTTGAAGCCCACACAAGTCGGTGGCATTTTCC
AGTCCTCAAAGAGAAGGACACCTTTT
Found at i:3386670 original size:51 final size:51
Alignment explanation
Indices: 3386614--3386800 Score: 243
Period size: 51 Copynumber: 3.6 Consensus size: 51
3386604 TTAAGTTTCT
* * *
3386614 CAATTTTTCATAATCGGGGATACACCAACCCCGGTTTTATTTCTTAAACAC
1 CAATTTTTCACAATCGGGGATACTCCAACCCCGGTTTTATTTCTAAAACAC
* * *
3386665 TAATTTTCCACAATCGAGGATACTCCAACCCCGGTTTTATTT-TCAAAACAC
1 CAATTTTTCACAATCGGGGATACTCCAACCCCGGTTTTATTTCT-AAAACAC
* * * *
3386716 CAA-TTTTCTATAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACAC
1 CAATTTTTC-ACAATCGGGGATACTCCAACCCCGGTTTTATTT-CTAAAACAC
3386768 CAATTTTTCACAATCGGGGATACTCCAACCCCG
1 CAATTTTTCACAATCGGGGATACTCCAACCCCG
3386801 TTAATCATCG
Statistics
Matches: 116, Mismatches: 15, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
50 5 0.04
51 74 0.64
52 32 0.28
53 5 0.04
ACGTcount: A:0.30, C:0.27, G:0.11, T:0.31
Consensus pattern (51 bp):
CAATTTTTCACAATCGGGGATACTCCAACCCCGGTTTTATTTCTAAAACAC
Found at i:3386890 original size:79 final size:79
Alignment explanation
Indices: 3386807--3387408 Score: 821
Period size: 79 Copynumber: 7.6 Consensus size: 79
3386797 CCCGTTAATC
* * * * *
3386807 ATCGGGGATACTCCAACCTCGTTATTTCTAAGAGGATACTCCAACCCCAGCTTTATTCCAAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTCCAAGGGGATACTCCAACCCCGGCTTTATTCCTAAAAT
3386872 ATTGATTTCTCATA
66 ATTGATTTCTCATA
*
3386886 ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGCTTTATTCCTAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTCCAAGGGGATACTCCAACCCCGGCTTTATTCCTAAAAT
3386951 ATTGATTTCTCATA
66 ATTGATTTCTCATA
* * * *
3386965 ATCGGGGATACTCTAACCCCGTTATTTTCGAGGGGATACTCCAACCCTGGCTTTATTCCTAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTCCAAGGGGATACTCCAACCCCGGCTTTATTCCTAAAAT
3387030 ATTGATTTCTCATA
66 ATTGATTTCTCATA
* *
3387044 ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGCTTTATTTCTAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTCCAAGGGGATACTCCAACCCCGGCTTTATTCCTAAAAT
*
3387109 ATTGATTTCTCAAA
66 ATTGATTTCTCATA
* * ** * *
3387123 ATTGGGAATACTCCAACCCTATTATTTCCAAGGGGATACTCCAACCCCGGTTTTATTTCTAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTCCAAGGGGATACTCCAACCCCGGCTTTATTCCTAAAAT
3387188 ATTGATTTCTCATA
66 ATTGATTTCTCATA
* * **
3387202 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGATTTTATTCCTAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTCCAAGGGGATACTCCAACCCCGGCTTTATTCCTAAAAT
*
3387267 ATTGATTTCTCACA
66 ATTGATTTCTCATA
* * * * ** *
3387281 ATCAGGGATACTCCAACCCCGTTATTTTCACGGGGATACTCCAACCCTGATTTTATT-TTCAAAA
1 ATCGGGGATACTCCAACCCCGTTATTTCCAAGGGGATACTCCAACCCCGGCTTTATTCCT-AAAA
* ***
3387345 CACCAATTT-TCTATA
65 TATTGATTTCTC-ATA
** * *
3387360 ATTAGGGATACTCCAACCCTGTTATTTCCAAGAGGATACTCCAACCCCG
1 ATCGGGGATACTCCAACCCCGTTATTTCCAAGGGGATACTCCAACCCCG
3387409 ATTTTATTTC
Statistics
Matches: 475, Mismatches: 46, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
78 3 0.01
79 472 0.99
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.32
Consensus pattern (79 bp):
ATCGGGGATACTCCAACCCCGTTATTTCCAAGGGGATACTCCAACCCCGGCTTTATTCCTAAAAT
ATTGATTTCTCATA
Found at i:3389353 original size:13 final size:13
Alignment explanation
Indices: 3389335--3389384 Score: 55
Period size: 13 Copynumber: 3.5 Consensus size: 13
3389325 TTCAATGATT
3389335 TGTATCGATACAA
1 TGTATCGATACAA
3389348 TGTATCGATACATAA
1 TGTATCGATAC--AA
*
3389363 GTTGTATTGATACAA
1 --TGTATCGATACAA
3389378 TGTATCG
1 TGTATCG
3389385 CTACGAAGCT
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
13 17 0.55
15 4 0.13
17 10 0.32
ACGTcount: A:0.34, C:0.12, G:0.18, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3389447 original size:13 final size:13
Alignment explanation
Indices: 3389429--3389453 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3389419 ATTAGCCAAA
3389429 TGTATCGATACAT
1 TGTATCGATACAT
3389442 TGTATCGATACA
1 TGTATCGATACA
3389454 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3397109 original size:20 final size:20
Alignment explanation
Indices: 3397084--3397137 Score: 83
Period size: 20 Copynumber: 2.7 Consensus size: 20
3397074 TTACCACTAT
*
3397084 TTGTATCGATACATGGT-ACA
1 TTGTATCGATACATGATGA-A
3397104 TTGTATCGATACATGATGAA
1 TTGTATCGATACATGATGAA
3397124 TTGTATCGATACAT
1 TTGTATCGATACAT
3397138 TACTTCCAAC
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 31 0.97
21 1 0.03
ACGTcount: A:0.31, C:0.13, G:0.19, T:0.37
Consensus pattern (20 bp):
TTGTATCGATACATGATGAA
Found at i:3398872 original size:475 final size:476
Alignment explanation
Indices: 3397875--3398929 Score: 1429
Period size: 475 Copynumber: 2.2 Consensus size: 476
3397865 CTGAGCTTTC
* * * * *
3397875 AGGCACTATAAACATATTTTCCCTATA-AGGATAAATGATATTGATGATTTTATTTAGCATGGAA
1 AGGCACTATAAACACATTCTCCTTA-ACAGGATAAATGATATTGATGATTTTCTTTTGCATGGAA
* * * * ** * *
3397939 ATTTTTTCTTTGCCATATTTTCCTTAATATCAAAGTTCATCCTTTAAATAAGACAAGCATTGATT
65 ATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATCCCCTAAATAAAACAAGCATCGATT
* * * * *
3398004 CCCATAATAGTCTCCATTCTTTCCAAGAATGGGAAGCCACAACGCATTCCTTTCATTAGGATAAA
130 CCCATAACAGTCTCAATTCTTTCCAAGAATGGGAAGCCAAAACACATTCCCTTCATTAGGATAAA
* *
3398069 TGAAATTGATAATTTGGCGTTGCATGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATTATAGT
195 TGAAATTGATAATTTGGCGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCATAGT
3398134 TTATCTCTTAAATTACCACAAACATGAATACTCATACTAATCCCAATCCTTTTCAAGATTAGGCA
260 TTATCTCTTAAATTACCACAAACATGAATACTCATACTAATCCCAATCCTTTTCAAGATTAGGCA
* * * * *
3398199 TCATAAACATAGTCTTCTCATTAAGATGCATCATATTGATTCTTTGGCTTCGCAAGAGAGGCTTT
325 CCATAAACATAGACTTCTCATTAAGATACATCATATTGATTCTTTGGCTTCACAAGAAAGGCTTT
* * *
3398264 TTTCTACCCATTTTTGTAAAGTCTAAGTTCATGCCTCAATTGAGATAAAAATGGATTCTAGTAAT
390 TTTCTACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAAAATGGATTCTAGTAAT
* * *
3398329 TATCTTCATTCTTTTTGTGATT
455 GATCTTCATTCGTTTTGAGATT
** * * ** * *
3398351 AGGTTCTATATACACGTTCTCCTTATTATGATAAATGGTATTGATGATTTTCTTTTGCATGGAAA
1 AGGCACTATAAACACATTCTCCTTAACAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAA
* * *
3398416 TCTTTTCTTTACCCTATTTTCCTTAAAATCAAAATTCATCCCCTATATAAAACTAGCATCGATTC
66 TCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATCCCCTAAATAAAACAAGCATCGATTC
* * * *
3398481 TCGTAACAGTCTCAATTCCTTT-CAAGATTGGGAAGCCAAAACATATTCCCTTCATTAGGATAAA
131 CCATAACAGTCTCAATT-CTTTCCAAGAATGGGAAGCCAAAACACATTCCCTTCATTAGGATAAA
* ** * * *
3398545 TGACATTGATGCTTTGGTGTTGTAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCATAGT
195 TGAAATTGATAATTTGGCGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCATAGT
* * * * *
3398610 TTGTCTCTTAAA-TACGACAAACATGAATACTCATACTAATCCCTATTCTTTTCAGGATTAGGCA
260 TTATCTCTTAAATTACCACAAACATGAATACTCATACTAATCCCAATCCTTTTCAAGATTAGGCA
* * *
3398674 CCATAAACATAGACTTCTCATT-AGCATACAT-ATATTGATTCTTTGGTTTCATAAGAAAGGTTT
325 CCATAAACATAGACTTCTCATTAAG-ATACATCATATTGATTCTTTGGCTTCACAAGAAAGGCTT
* * *
3398737 TTTTCTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTTAAATGAGACAAACATGGATTCTAGTA
389 TTTTCT-ACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAAAATGGATTCTAGTA
*
3398802 ATGATCTTTATTCGTTTTGAGATT
453 ATGATCTTCATTCGTTTTGAGATT
* *
3398826 AGGCAGTATAAACACATTCT-CTTCAACAGGATAAATGATATTGATGATTTTCTTTTACATGGAA
1 AGGCACTATAAACACATTCTCCTT-AACAGGATAAATGATATTGATGATTTTCTTTTGCATGGAA
3398890 ATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCAT
65 ATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCAT
3398930 AACTTGAATA
Statistics
Matches: 500, Mismatches: 74, Indels: 11
0.85 0.13 0.02
Matches are distributed among these distances:
474 38 0.08
475 234 0.47
476 224 0.45
477 4 0.01
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (476 bp):
AGGCACTATAAACACATTCTCCTTAACAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAA
TCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATCCCCTAAATAAAACAAGCATCGATTC
CCATAACAGTCTCAATTCTTTCCAAGAATGGGAAGCCAAAACACATTCCCTTCATTAGGATAAAT
GAAATTGATAATTTGGCGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCATAGTT
TATCTCTTAAATTACCACAAACATGAATACTCATACTAATCCCAATCCTTTTCAAGATTAGGCAC
CATAAACATAGACTTCTCATTAAGATACATCATATTGATTCTTTGGCTTCACAAGAAAGGCTTTT
TTCTACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAAAATGGATTCTAGTAATG
ATCTTCATTCGTTTTGAGATT
Found at i:3399179 original size:266 final size:265
Alignment explanation
Indices: 3398688--3399223 Score: 786
Period size: 266 Copynumber: 2.0 Consensus size: 265
3398678 AAACATAGAC
* ** * *
3398688 TTCTCATTAGCATACATATATTGATTCTTTGGTTTCATAAGAAAGGTTTTTTTCTCACCAATTTT
1 TTCTCATTAGCATACATATATTGATTCTTTGGTTTCACAAGAAAGACTTTTTTCCCACCAATTTA
* * *
3398753 TGTAAAGTCTAAGTTCGTGCCTTAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCGTT
66 TGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTATAGTAATGATCTTTATTCCTT
* * * *
3398818 TTGAGATTAGGCAGTATAAACACATTCTCTTCAACAGGATAAATGATATTGATGATTTTCTTTTA
131 TTGAGATTAAGCAGTATAAACACATTCTCCTCAACAAGATAAATGATATTAATGATTTTCTTTTA
* * *
3398883 CATGGAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATAACTTGAATAAGACAAGC
196 CATGGAAATCTTTTCTTTACCCTATTTTCCTTAAAACCAAAGTTCATAACGTAAATAAGACAAGC
* *
3398948 CTCCA
261 ATCAA
* * *
3398953 TTCTCATTAGGATACATCATATTGATTCTTTGGTTTCGCAAGAAAGACTTTTTTCCCGCCAATTT
1 TTCTCATTAGCATACAT-ATATTGATTCTTTGGTTTCACAAGAAAGACTTTTTTCCCACCAATTT
*
3399018 ATGTATAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTATAGTAATGATCTTTATTCCT
65 ATGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTATAGTAATGATCTTTATTCCT
* **
3399083 TTTGTGATTAAGCA-TAATAAACACATTCTCCTCATTAAGATAAATGATATTAATGATTTTCTTT
130 TTTGAGATTAAGCAGT-ATAAACACATTCTCCTCAACAAGATAAATGATATTAATGATTTTCTTT
* * * **
3399147 TACGTGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAACCAAAGTTCATCCCGTAAATAAGACAA
194 TACATGGAAATCTTTTCTTTACCCTATTTTCCTTAAAACCAAAGTTCATAACGTAAATAAGACAA
3399212 GCATCAA
259 GCATCAA
3399219 TTCTC
1 TTCTC
3399224 GTAACAGTCT
Statistics
Matches: 240, Mismatches: 29, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
265 17 0.07
266 223 0.93
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.39
Consensus pattern (265 bp):
TTCTCATTAGCATACATATATTGATTCTTTGGTTTCACAAGAAAGACTTTTTTCCCACCAATTTA
TGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTATAGTAATGATCTTTATTCCTT
TTGAGATTAAGCAGTATAAACACATTCTCCTCAACAAGATAAATGATATTAATGATTTTCTTTTA
CATGGAAATCTTTTCTTTACCCTATTTTCCTTAAAACCAAAGTTCATAACGTAAATAAGACAAGC
ATCAA
Found at i:3400205 original size:476 final size:476
Alignment explanation
Indices: 3398953--3401592 Score: 3071
Period size: 476 Copynumber: 5.6 Consensus size: 476
3398943 CAAGCCTCCA
* * * * ** *
3398953 TTCTCATTAGGATACATCATATTGATTCTTTGGTTTCGCAAGAAAGACTTTTTTCCCGCCAATTT
1 TTCTCATTATGATACATCATATTGATGCTTTGGTTTCACAAGAATGGTTTTTTTCCCACCAATTT
* * * * *
3399018 ATGTATAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTATAGTAATGATCTTTATTCCT
66 TTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCAT
* * *
3399083 TTTGTGATTAAGCA-TAATAAACACATTCTCCTCATTAA-GATAAATGATATTAATGATTTTCTT
131 TTTGTGATTAGGCACT-ATAAACACATTCTCCT-AATAAGGATAAATGATATTGATGATTTTCTT
* * * * * *
3399146 TT-ACGTGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAACCAAAGTTCATCCCGTAAATAAGAC
194 TTGA-ATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACCTTAAATAAGAC
* *
3399210 AAGCATCAATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAAGACATTCCCTTC
258 AAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTC
* *
3399275 GTTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACC-ATTTTTGA
323 ATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGATTTTTGA
* * *
3399339 TAGAAT-TAATATTTGTCTCATAAATAAGACAAACATGAATAGC-CATACTAATCCCAATTCTTT
388 TAGAATCTAA-GTTTGTCTCTTAAATAAGACAAACATGAATA-CTCATACTAATCCCATTTCTTT
*
3399402 TCAA-GATTAGGTAGCATAAACATAGTC
451 T-AAGGATTAGGCA-CATAAACATAGTC
* * * * *
3399429 TTCTCGTTATAATACATTATTTTGATGCTTTGGTTTCACAAGAAAT-GTTTTTTTCTCACCAATT
1 TTCTCATTATGATACATCATATTGATGCTTTGGTTTCACAAG-AATGGTTTTTTTCCCACCAATT
3399493 TTTGTAAAGTCTAA----G-GCCTCAAATGAGACAAACATGGATTCTAG---T-A-----ATTCA
65 TTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCA
* * * * * ** * *
3399544 TTGTGAGAATAGGAACTATAAACCCATTCTCCTCCTTAGGATAAATGATATTGAAGATTTTCTTT
130 TTTTGTGATTAGGCACTATAAACACATTCTCCTAATAAGGATAAATGATATTGATGATTTTCTTT
* * * * * * *
3399609 T-ACACGAAAATCCTTTCTTTGCCCAATTTCCCTTTAAATCAATGTTCTTACCTTAAATAAGACA
195 TGA-ATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACCTTAAATAAGACA
* * * *
3399673 AGCATCGATTCTCGCAATAGTCTCCATTCTTTTCAAGATTGTGAAGCCAAAACACATTTCCTTCA
259 AGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCA
* * * * *
3399738 TTAAGATGCATGACAATGAAGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTTGAT
324 TTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGATTTTTGAT
* * * *
3399803 GGAATCGAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCAC-TTTTTTTTAA
389 AGAATCTAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCATTTCTTTT-A
*
3399867 AGG-TTAGGCACTATAAACTTAGTC
453 AGGATTAGGCAC-ATAAACATAGTC
* * * *
3399891 TTCTCATTATGATACCTTATATTGATGCTTTGGTTTCGCAAGAACGGTTTTTTTCCCACCAATTT
1 TTCTCATTATGATACATCATATTGATGCTTTGGTTTCACAAGAATGGTTTTTTTCCCACCAATTT
* * ** *
3399956 TCT-TAAAGTCTAAGCTCATGCCTCAAATGAGATGAACATGGATTCTAGTAATGATTTTCATTCA
66 T-TGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCA
* ** * * *
3400020 TTTTGTGATTAGGCACTATTAATGCATTCTCCTAATAATGATAAACGATATTGATGATTTTATTT
130 TTTTGTGATTAGGCACTATAAACACATTCTCCTAATAAGGATAAATGATATTGATGATTTTCTTT
* *
3400085 TGAATGAAAATTTTTTCTTTGCCCTATTTTTCTTAAAATCAAAGTTCATACCTTAAATAAGACAA
195 TGAATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACCTTAAATAAGACAA
* * * * *
3400150 ACATTGATTCCCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCTCTTCAT
260 GCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCAT
* * * * * * * * *
3400215 TACGATAAATGAAATTGATACTTTGGTGTCGGAGGAAAGGCTTTTCTTTCCTCC-ATTTTTCATA
325 TAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGATTTTTGATA
* ** *
3400279 AAAT-TATAGTTTGTCTCTTAAATACCACAAACATGAATACTCATACTAATCCCCA-TTCTTTTC
390 GAATCTA-AGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAAT-CCCATTTCTTTTA
*
3400342 AGGATTAGGCGCCAT-AACATAGTC
453 AGGATTAGGC-ACATAAACATAGTC
* * * * *
3400366 TTCTTATTAGGATAGATCATATTGATTCTTTGGTTTCACAAGAATGGCTTTTTTTCTCACCAATT
1 TTCTCATTATGATACATCATATTGATGCTTTGGTTTCACAAGAATGG-TTTTTTTCCCACCAATT
* * * *
3400431 TTTGTAAAGTCTATGTTCGTGCCTTAAATGAGACAAAAATGGATTCTAGTAATGATCTTCATTCT
65 TTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCA
* * * * * *
3400496 TTTTGTGATTAGGTACTATAAACACATTTTCCTTATTAGGATAAATGATATTGATTATTTTCTTC
130 TTTTGTGATTAGGCACTATAAACACATTCTCCTAATAAGGATAAATGATATTGATGATTTTCTTT
* ** ** *
3400561 TGCATGAAAATCTTTTCTTTAACCTATTTTTCCTTAAAATCAAAGTTCACCCCTTAAATAAAACA
195 TGAATGAAAATCTTTTCTTTGCCCTA-TTTTCCTTAAAATCAAAGTTCATACCTTAAATAAGACA
* * * * * *
3400626 AGCATCAATTCTCATAGCAGTCTCAATTCTTTTTAAGATTGGGAAGCTAAAACACATTCCCTTCA
259 AGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCA
* * * *
3400691 TTAGGATACATAATATTGATGCTTTGGTGTCGCAAGAAAAGCATTTCTTTCCACCG-TTTTTGGT
324 TTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGATTTTTGAT
* *
3400755 AGAATC-AATGTTTGTCTCTTAAATAAGACAAACTTGAATAGTCATACTAAT-CCATATTCTTTT
389 AGAATCTAA-GTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCAT-TTCTTTT
* * *
3400818 CAGGATTAGGCAACATAAACATAATG
452 AAGGATTAGGC-ACATAAACATAGTC
* * *
3400844 TTCTCATTATGATACATCATTTTGATGCTTTGGTTTCACAAGAAATGTTTTTTTTCTCACCAATT
1 TTCTCATTATGATACATCATATTGATGCTTTGGTTTCACAAG-AATGGTTTTTTTCCCACCAATT
* * * *
3400909 TTTGTAAAGTCTAAGTTCATGCCTCAAATGACACAAACATAGATTCTAGTAATAATCTTCATTCA
65 TTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCA
* * * * *
3400974 TTTTGTGATTAGGCACTATAACCACATTCTCCTAATTAGGTTAAATTATATTGATGATTTACTTT
130 TTTTGTGATTAGGCACTATAAACACATTCTCCTAATAAGGATAAATGATATTGATGATTTTCTTT
* * *
3401039 TGCATTG-AAATCTTTTCTTTGCCCTATTTTTCTTAAAATCAAAGTTC--A--TTAAATAAGATA
195 TG-AATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACCTTAAATAAGACA
* *
3401099 AGCATCGATTCTCGTAACAGTCTCTATTCTTTTCAAGATTGGGAAGCCAAAACATATTCCCTTCA
259 AGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCA
* ** * *
3401164 TTAGGATACATGGCATTGATGCTTTGGTGTCATAAGAAAAGCTTTTCTTTCAACCG-TTTTTTAT
324 TTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGATTTTTGAT
* * * * *
3401228 AGAA-CTAAATTTGTCTCTTAAATACGACAAACATGAATACTCCTACTAATTCCC-GTTCTTTTT
389 AGAATCTAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAA-TCCCATTTCTTTTA
*
3401291 TGGATTAGGCACCATAAACATAGTC
453 AGGATTAGGCA-CATAAACATAGTC
* * * * *
3401316 TTTTCATTAAGATACATCATATTGATTCTTTGGTTTCACAAGAAATGATTTTTTCCTACCACCAA
1 TTCTCATTATGATACATCATATTGATGCTTTGGTTTCACAAG-AATGGTTTTTT--TCCCACCAA
* * *
3401381 TTTTGGTAATGTCTAAGTGCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATT
63 TTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATT
* * * * *
3401446 CATATTGTGATTAGGCATTATAAACATATTCTCCTCATTAGTG-TAAATGATATTGATGATTTTC
128 CATTTTGTGATTAGGCACTATAAACACATTCTCCTAATAAG-GATAAATGATATTGATGATTTTC
** * * * **
3401510 TTTTGCTTGGAAAT-TTTTCTTTGCCCTATTTTCCTTTAAATCATAGTTCATACCTTAAATTGGA
192 TTTTGAATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACCTTAAATAAGA
3401574 CAAGCATCGATTCTCGTAA
257 CAAGCATCGATTCTCGTAA
3401593 TATGTTAGGA
Statistics
Matches: 1830, Mismatches: 281, Indels: 105
0.83 0.13 0.05
Matches are distributed among these distances:
461 5 0.00
462 304 0.17
463 55 0.03
464 2 0.00
467 28 0.02
468 1 0.00
470 1 0.00
471 30 0.02
472 114 0.06
473 165 0.09
474 132 0.07
475 107 0.06
476 432 0.24
477 255 0.14
478 193 0.11
479 6 0.00
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (476 bp):
TTCTCATTATGATACATCATATTGATGCTTTGGTTTCACAAGAATGGTTTTTTTCCCACCAATTT
TTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCAT
TTTGTGATTAGGCACTATAAACACATTCTCCTAATAAGGATAAATGATATTGATGATTTTCTTTT
GAATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACCTTAAATAAGACAAG
CATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATT
AGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGATTTTTGATAG
AATCTAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCATTTCTTTTAAGG
ATTAGGCACATAAACATAGTC
Found at i:3401922 original size:13 final size:13
Alignment explanation
Indices: 3401904--3401928 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3401894 ATATTGCTTA
3401904 GTATCGATACATT
1 GTATCGATACATT
3401917 GTATCGATACAT
1 GTATCGATACAT
3401929 GTTTGTAGAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:3402796 original size:123 final size:123
Alignment explanation
Indices: 3402611--3403129 Score: 661
Period size: 123 Copynumber: 4.2 Consensus size: 123
3402601 TTCTAGCCTT
* * *
3402611 TTTAGTCCTCAAAGAACAAGGCA--CCTTTTCCTTTTTAAAAGCCCACACGAGTTGGTGGCACCT
1 TTTAGTCCTCAAAGAGC-AGG-ATGCCTTTTCC-TTTTCAAAGCCCACACAAGTTGGTGGCACCT
* * * * *
3402674 TTTAGTCCTCAAAGAGCAAGACACCTTTTCCTTTT-AGAAGCCTATACGAGTTGGTGGCACC
63 TTTAGTCCTCAAAGAGTAGGACGCCTTTTCCTTTTCA-AAGCCCACACGAGTTGGTGGCACC
* * *
3402735 TTTAGTCCTTAAAGAGCAGGATGGCTTTTCCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTC
1 TTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTT
* * *
3402800 AGTCCTCAAAGAGTAGGATGCATTTTCCTTTTCAAAGCCCACACAAGTTGGTGGCACC
66 AGTCCTCAAAGAGTAGGACGCCTTTTCCTTTTCAAAGCCCACACGAGTTGGTGGCACC
* * * *
3402858 TTTCAGTCCTCAAAGAGCAGGATACCTTTTCTTTTTCAAAG-CTACACGAGTTGGTGGCACCTTT
1 TTT-AGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTT
* * * *
3402922 TAGTCTTTAAAGAGTAGGACGTCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
65 TAGTCCTCAAAGAGTAGGACGCCTTTTCCTTTTCAAAGCCCACACGAGTTGGTGGCA-CC
* * * * *
3402982 TTTAGTCCTCAAAAAGCAGGACGCCTTTTTCTTTTCAAAGCCCACGCAAGTTGGTAGCACCCTTT
1 TTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTCAAAGCCCACACAAGTTGGTGGCA-CCTTT
* * *
3403047 T-GTCCTCAGAGAGTAGGACGCCTTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCACC
65 TAGTCCTCAAAGAGTAGGACGCCTTTTCCTTTTCAAAGCCCACACGAGTTGGTGGCACC
3403105 TTTTAGTCCTCAAAGAGCAGGATGC
1 -TTTAGTCCTCAAAGAGCAGGATGC
3403130 ACTCTATTTC
Statistics
Matches: 343, Mismatches: 44, Indels: 16
0.85 0.11 0.04
Matches are distributed among these distances:
122 1 0.00
123 189 0.55
124 147 0.43
125 6 0.02
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (123 bp):
TTTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTT
AGTCCTCAAAGAGTAGGACGCCTTTTCCTTTTCAAAGCCCACACGAGTTGGTGGCACC
Found at i:3402830 original size:62 final size:61
Alignment explanation
Indices: 3402611--3403126 Score: 615
Period size: 62 Copynumber: 8.3 Consensus size: 61
3402601 TTCTAGCCTT
* * *
3402611 TTTAGTCCTCAAAGAACAAGG-CACCTTTTCCTTTTTAAAAGCCCACACGAGTTGGTGGCACC
1 TTTAGTCCTCAAAGAGC-AGGACGCCTTTTCC-TTTTCAAAGCCCACACGAGTTGGTGGCACC
* * * *
3402673 TTTTAGTCCTCAAAGAGCAAGACACCTTTTCCTTTT-AGAAGCCTATACGAGTTGGTGGCACC
1 -TTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTCA-AAGCCCACACGAGTTGGTGGCACC
* * * *
3402735 TTTAGTCCTTAAAGAGCAGGATGGCTTTTCCTTTTCAAAGCCCACACAAGTTGGTGGCACC
1 TTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTCAAAGCCCACACGAGTTGGTGGCACC
* * * *
3402796 TTTCAGTCCTCAAAGAGTAGGATGCATTTTCCTTTTCAAAGCCCACACAAGTTGGTGGCACC
1 TTT-AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTCAAAGCCCACACGAGTTGGTGGCACC
** * *
3402858 TTTCAGTCCTCAAAGAGCAGGATACCTTTTCTTTTTCAAAG-CTACACGAGTTGGTGGCACC
1 TTT-AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTCAAAGCCCACACGAGTTGGTGGCACC
* * * * *
3402919 TTTTAGTCTTTAAAGAGTAGGACGTCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
1 -TTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTCAAAGCCCACACGAGTTGGTGGCA-CC
* * * * *
3402982 TTTAGTCCTCAAAAAGCAGGACGCCTTTTTCTTTTCAAAGCCCACGCAAGTTGGTAGCACCC
1 TTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTCAAAGCCCACACGAGTTGGTGGCA-CC
* * * * *
3403044 TTTTGTCCTCAGAGAGTAGGACGCCTTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCACC
1 TTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTCAAAGCCCACACGAGTTGGTGGCACC
3403105 TTTTAGTCCTCAAAGAGCAGGA
1 -TTTAGTCCTCAAAGAGCAGGA
3403127 TGCACTCTAT
Statistics
Matches: 395, Mismatches: 50, Indels: 17
0.85 0.11 0.04
Matches are distributed among these distances:
61 104 0.26
62 263 0.67
63 28 0.07
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (61 bp):
TTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTCAAAGCCCACACGAGTTGGTGGCACC
Found at i:3402934 original size:185 final size:184
Alignment explanation
Indices: 3402611--3403128 Score: 670
Period size: 185 Copynumber: 2.8 Consensus size: 184
3402601 TTCTAGCCTT
* *
3402611 TTTAGTCCTCAAAGAA-CAAGGCAC-C-TTTTCCTTTTTAAAAGCCCACACGAGTTGGTGGCACC
1 TTTAGTCCTCAAA-AAGC-AGG-ACGCATTTTCC-TTTTCAAAGCCCACACAAGTTGGTGGCACC
* * *
3402673 TTTTAGTCCTCAAAGAGCAAGACACCTTTTCCTTTTAGAAGCCTATACGAGTTGGTGGCACC-TT
62 -TTTAGTCCTCAAAGAGCAGGACACCTTTTCTTTTTA-AAGCCTACACGAGTTGGTGGCACCTTT
3402737 TAGTCCTTAAAGAGCAGGATGGCTTTTCCTTTTCAAAGCCCACACAAGTTGGTGGCA-CC
125 TAGTCCTTAAAGAGCAGGATGGCTTTTCCTTTTCAAAGCCCACACAAGTTGGTGGCACCC
* * *
3402796 TTTCAGTCCTCAAAGAGTAGGATGCATTTTCCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTT
1 TTT-AGTCCTCAAAAAGCAGGACGCATTTTCCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTT
*
3402861 CAGTCCTCAAAGAGCAGGATACCTTTTCTTTTTCAAAG-CTACACGAGTTGGTGGCACCTTTTAG
65 -AGTCCTCAAAGAGCAGGACACCTTTTCTTTTT-AAAGCCTACACGAGTTGGTGGCACCTTTTAG
* * * * * *
3402925 TCTTTAAAGAGTAGGACGTCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
128 TCCTTAAAGAGCAGGATGGCTTTTCCTTTTCAAAGCCCACACAAGTTGGTGGCACCC
* * * *
3402982 TTTAGTCCTCAAAAAGCAGGACGCCTTTTTCTTTTCAAAGCCCACGCAAGTTGGTAGCACCCTTT
1 TTTAGTCCTCAAAAAGCAGGACGCATTTTCCTTTTCAAAGCCCACACAAGTTGGTGGCA-CCTTT
* * * * *
3403047 TGTCCTCAGAGAGTAGGACGCCTTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGT
65 AGTCCTCAAAGAGCAGGACACC-TTTTCTTTTTAAAGCCTACACGAGTTGGTGGCACCTTTTAGT
*
3403112 CCTCAAAGAGCAGGATG
129 CCTTAAAGAGCAGGATG
3403129 CACTCTATTT
Statistics
Matches: 290, Mismatches: 32, Indels: 21
0.85 0.09 0.06
Matches are distributed among these distances:
184 23 0.08
185 191 0.66
186 76 0.26
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (184 bp):
TTTAGTCCTCAAAAAGCAGGACGCATTTTCCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTA
GTCCTCAAAGAGCAGGACACCTTTTCTTTTTAAAGCCTACACGAGTTGGTGGCACCTTTTAGTCC
TTAAAGAGCAGGATGGCTTTTCCTTTTCAAAGCCCACACAAGTTGGTGGCACCC
Found at i:3403162 original size:41 final size:41
Alignment explanation
Indices: 3403110--3403232 Score: 183
Period size: 41 Copynumber: 3.0 Consensus size: 41
3403100 GCACCTTTTA
3403110 GTCCTCAAAGAGCAGGATGCACTCTATTTCCTTTTCCCTTT
1 GTCCTCAAAGAGCAGGATGCACTCTATTTCCTTTTCCCTTT
*
3403151 GTCCTCAAAGAGCAGGATGCACTCTATTTCCTTTTCTCTTT
1 GTCCTCAAAGAGCAGGATGCACTCTATTTCCTTTTCCCTTT
* * ** * *
3403192 GTCCTCAAAGTGTAGGACACACTTTATTTCCCTTTCCCTTT
1 GTCCTCAAAGAGCAGGATGCACTCTATTTCCTTTTCCCTTT
3403233 CCATTTATCC
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 74 1.00
ACGTcount: A:0.20, C:0.28, G:0.14, T:0.38
Consensus pattern (41 bp):
GTCCTCAAAGAGCAGGATGCACTCTATTTCCTTTTCCCTTT
Found at i:3404307 original size:20 final size:20
Alignment explanation
Indices: 3404268--3404318 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
3404258 CAATACATTA
**
3404268 TATCGATACAT-GTTAATTG
1 TATCGATACATGGACAATTG
3404287 TATCGATACATGGACAATTG
1 TATCGATACATGGACAATTG
3404307 TATCGATACATG
1 TATCGATACATG
3404319 AGATTGGCAG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 11 0.38
20 18 0.62
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35
Consensus pattern (20 bp):
TATCGATACATGGACAATTG
Found at i:3404373 original size:20 final size:20
Alignment explanation
Indices: 3404348--3404397 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
3404338 TACCACTGTT
3404348 TGTATCGATACATGAT-ACAA
1 TGTATCGATACATGATGA-AA
*
3404368 TGTATCGATACATGATGAAT
1 TGTATCGATACATGATGAAA
3404388 TGTATCGATA
1 TGTATCGATA
3404398 TATAGCTTGT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
20 27 0.96
21 1 0.04
ACGTcount: A:0.36, C:0.12, G:0.18, T:0.34
Consensus pattern (20 bp):
TGTATCGATACATGATGAAA
Found at i:3412455 original size:22 final size:22
Alignment explanation
Indices: 3412430--3412471 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
3412420 ATTTTTTACA
3412430 TTTGACAAAGGGGGAGAAATGC
1 TTTGACAAAGGGGGAGAAATGC
**
3412452 TTTGATTAAGGGGGAGAAAT
1 TTTGACAAAGGGGGAGAAAT
3412472 TTTTTATTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.36, C:0.05, G:0.36, T:0.24
Consensus pattern (22 bp):
TTTGACAAAGGGGGAGAAATGC
Found at i:3413062 original size:20 final size:21
Alignment explanation
Indices: 3413039--3413093 Score: 76
Period size: 20 Copynumber: 2.6 Consensus size: 21
3413029 CACACCTAGA
3413039 TGTATCGATACATTATGCT-T
1 TGTATCGATACATTATGCTAT
* *
3413059 TGTATCGATACAATATGTTAAT
1 TGTATCGATACATTATGCT-AT
3413081 TGTATCGATACAT
1 TGTATCGATACAT
3413094 GAGATTGGCA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
20 17 0.57
22 13 0.43
ACGTcount: A:0.31, C:0.13, G:0.15, T:0.42
Consensus pattern (21 bp):
TGTATCGATACATTATGCTAT
Found at i:3416402 original size:28 final size:28
Alignment explanation
Indices: 3416356--3416428 Score: 94
Period size: 28 Copynumber: 2.6 Consensus size: 28
3416346 TCCACAATCG
*
3416356 GGGATACTCCAACCTCGTTATTTTCGAA
1 GGGATACTCAAACCTCGTTATTTTCGAA
**
3416384 GGGATACTCAAAACC-CGTTATTTTTTAA
1 GGGATACTC-AAACCTCGTTATTTTCGAA
*
3416412 GGGATACTCCAACCTCG
1 GGGATACTCAAACCTCG
3416429 ATTTTGTTTC
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
27 4 0.10
28 31 0.79
29 4 0.10
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (28 bp):
GGGATACTCAAACCTCGTTATTTTCGAA
Found at i:3416483 original size:107 final size:107
Alignment explanation
Indices: 3416294--3416533 Score: 358
Period size: 107 Copynumber: 2.2 Consensus size: 107
3416284 ATTCATGTTT
* * *
3416294 TTATTTTCGAAGGGATACTCCAACCCCGGTTTTGTCTCCAAAACATCAATTTTCCACAATCGGGG
1 TTATTTTTGAAGGGATACTCCAACCTCGATTTTGTCTCCAAAACATCAATTTTCCACAATCGGGG
*
3416359 ATACTCCAACCTCGTTATTTTCGAAGGGATACTCAAAACCC-G
66 ATACTCCAACCTCGTTATTTTCGAAGGGATACTC-AAACCCTA
* * *
3416401 TTATTTTTTAAGGGATACTCCAACCTCGATTTTGTTTCCAAAACATCAATTTTTCACAATCGGGG
1 TTATTTTTGAAGGGATACTCCAACCTCGATTTTGTCTCCAAAACATCAATTTTCCACAATCGGGG
* *
3416466 ATACTCCAACC-CTGTTATTTTCGAGGGGATACTCCAACCCTA
66 ATACTCCAACCTC-GTTATTTTCGAAGGGATACTCAAACCCTA
*
3416508 TTATTTTTGAGGGGATACTCCAACCT
1 TTATTTTTGAAGGGATACTCCAACCT
3416534 GTTATTTTCG
Statistics
Matches: 120, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
106 6 0.05
107 114 0.95
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.33
Consensus pattern (107 bp):
TTATTTTTGAAGGGATACTCCAACCTCGATTTTGTCTCCAAAACATCAATTTTCCACAATCGGGG
ATACTCCAACCTCGTTATTTTCGAAGGGATACTCAAACCCTA
Found at i:3416546 original size:27 final size:28
Alignment explanation
Indices: 3416462--3416560 Score: 164
Period size: 28 Copynumber: 3.6 Consensus size: 28
3416452 TTTCACAATC
3416462 GGGGATACTCCAACCCTGTTATTTTCGA
1 GGGGATACTCCAACCCTGTTATTTTCGA
* *
3416490 GGGGATACTCCAACCCTATTATTTTTGA
1 GGGGATACTCCAACCCTGTTATTTTCGA
3416518 GGGGATACTCCAA-CCTGTTATTTTCGA
1 GGGGATACTCCAACCCTGTTATTTTCGA
*
3416545 GGGGATACTCTAACCC
1 GGGGATACTCCAACCC
3416561 GATTTTATTT
Statistics
Matches: 65, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.37
28 41 0.63
ACGTcount: A:0.23, C:0.24, G:0.21, T:0.31
Consensus pattern (28 bp):
GGGGATACTCCAACCCTGTTATTTTCGA
Found at i:3416586 original size:134 final size:136
Alignment explanation
Indices: 3416355--3416638 Score: 371
Period size: 134 Copynumber: 2.1 Consensus size: 136
3416345 TTCCACAATC
* **
3416355 GGGGATACTCCAA-CCTCGTTATTTTCGAAGGGATACTCAAAACCCGTTATTTTTTAAGGGATAC
1 GGGGATACTCCAACCCTCATTATTTTCGAAGGGATACTCAAAACCCGTTATTTTCGAAGGGATAC
* *
3416419 TCCAACCTCGATTTTGTTTCCAAAACATCAATTTTTCACAATCGGGGATACTCCAACC-CTGTTA
66 TCCAACCTCGATTTTGTTTCCAAAACATCAATTTTCCACAATCGGGGATACTCCAACCTC-ATTA
3416483 TTTTCGA
130 TTTTCGA
* * * * *
3416490 GGGGATACTCCAACCCT-ATTATTTTTGAGGGGATACTC-CAACCTGTTATTTTCGAGGGGATAC
1 GGGGATACTCCAACCCTCATTATTTTCGAAGGGATACTCAAAACCCGTTATTTTCGAAGGGATAC
* * * * * *
3416553 TCTAACC-CGATTTTATTTTTCAAAACATCAATTTTCCATAATTGGGGATACTCTAACCTCATTA
66 TCCAACCTCGATTTT-GTTTCCAAAACATCAATTTTCCACAATCGGGGATACTCCAACCTCATTA
3416617 TTTTCGA
130 TTTTCGA
3416624 GGGGATACTCCAACC
1 GGGGATACTCCAACC
3416639 TTGGTTTTAT
Statistics
Matches: 130, Mismatches: 16, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
133 7 0.05
134 88 0.68
135 32 0.25
136 3 0.02
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.34
Consensus pattern (136 bp):
GGGGATACTCCAACCCTCATTATTTTCGAAGGGATACTCAAAACCCGTTATTTTCGAAGGGATAC
TCCAACCTCGATTTTGTTTCCAAAACATCAATTTTCCACAATCGGGGATACTCCAACCTCATTAT
TTTCGA
Found at i:3416611 original size:78 final size:79
Alignment explanation
Indices: 3416518--3416689 Score: 215
Period size: 79 Copynumber: 2.2 Consensus size: 79
3416508 TTATTTTTGA
* * *
3416518 GGGGATACTCCAACCT-GTTATTTTCGAGGGGATACTCTAACC-CGATTTTATTTTTCAAAACA-
1 GGGGATACTCCAACCTCATTATTTTCGAGGGGATACTCCAACCTCGATTTTA-TTTCCAAAACAC
*
3416580 TCAATTTTCCATAATT
65 T-AATTTTCCACAATT
* * *
3416596 GGGGATACTCTAACCTCATTATTTTCGAGGGGATACTCCAACCTTGGTTTTATTTCCAAAACACT
1 GGGGATACTCCAACCTCATTATTTTCGAGGGGATACTCCAACCTCGATTTTATTTCCAAAACACT
* *
3416661 AATTTTTCACCATT
66 AATTTTCCACAATT
*
3416675 GGGGATACTACAACC
1 GGGGATACTCCAACC
3416690 CTGATTTTAT
Statistics
Matches: 80, Mismatches: 11, Indels: 5
0.83 0.11 0.05
Matches are distributed among these distances:
78 15 0.19
79 58 0.73
80 7 0.09
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.35
Consensus pattern (79 bp):
GGGGATACTCCAACCTCATTATTTTCGAGGGGATACTCCAACCTCGATTTTATTTCCAAAACACT
AATTTTCCACAATT
Found at i:3416724 original size:130 final size:130
Alignment explanation
Indices: 3416545--3416814 Score: 375
Period size: 130 Copynumber: 2.1 Consensus size: 130
3416535 TTATTTTCGA
* ** *
3416545 GGGGATACTCTAACCCGATTTTATTTTTCAAAACATCAATTTTCCATAATTGGGGATACTCTAAC
1 GGGGATACTCTAACCCGATTTTATTTTCCAAAACATCAATTTTCCATAATCAGGGATACTCCAAC
* * ** *
3416610 CTCATTATTTTCGAGGGGATACTCCAACCTTGGTTTTATTTCCAAAACA-CTAATTTTTCACCAT
66 CCCATTATTTTCGAAGGGATACTCCAACCTCAGTTTTATTTCCAAAACATC-AATTTTTCACAAT
*
3416674 T
130 C
*
3416675 GGGGATACTAC-AACCCTGATTTTA-TTTCCAAAACATCGATTTTCCATAATCAGGGATACTCCA
1 GGGGATACT-CTAACCC-GATTTTATTTTCCAAAACATCAATTTTCCATAATCAGGGATACTCCA
* *
3416738 TCCCCGTTATTTTCGAAGGGATACTCCAACCTCAGTTTTATTTCCAAAACATCAATTTTTCACAA
64 ACCCCATTATTTTCGAAGGGATACTCCAACCTCAGTTTTATTTCCAAAACATCAATTTTTCACAA
3416803 TC
129 TC
3416805 GGGGATACTC
1 GGGGATACTC
3416815 CAGTCTCGTT
Statistics
Matches: 124, Mismatches: 13, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
129 1 0.01
130 114 0.92
131 9 0.07
ACGTcount: A:0.29, C:0.23, G:0.13, T:0.35
Consensus pattern (130 bp):
GGGGATACTCTAACCCGATTTTATTTTCCAAAACATCAATTTTCCATAATCAGGGATACTCCAAC
CCCATTATTTTCGAAGGGATACTCCAACCTCAGTTTTATTTCCAAAACATCAATTTTTCACAATC
Found at i:3416731 original size:51 final size:51
Alignment explanation
Indices: 3416625--3416734 Score: 123
Period size: 51 Copynumber: 2.2 Consensus size: 51
3416615 TATTTTCGAG
* * * * * **
3416625 GGGATACTCCAACCTTGGTTTTATTTCCAAAACACTAATTTTTCACCATTG
1 GGGATACTACAACCCTGATTTTATTTCCAAAACACTAATTTTCCACAATCA
* *
3416676 GGGATACTACAACCCTGATTTTATTTCCAAAACA-TCGATTTTCCATAATCA
1 GGGATACTACAACCCTGATTTTATTTCCAAAACACT-AATTTTCCACAATCA
3416727 GGGATACT
1 GGGATACT
3416735 CCATCCCCGT
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
50 1 0.02
51 48 0.98
ACGTcount: A:0.30, C:0.23, G:0.13, T:0.35
Consensus pattern (51 bp):
GGGATACTACAACCCTGATTTTATTTCCAAAACACTAATTTTCCACAATCA
Found at i:3416857 original size:79 final size:79
Alignment explanation
Indices: 3416676--3416850 Score: 228
Period size: 79 Copynumber: 2.2 Consensus size: 79
3416666 TTCACCATTG
* * * *
3416676 GGGATACTACAACC-CTGATTTTATTTCCAAAACATCGATTTTCCATAATCAGGGATACTCCATC
1 GGGATACTCCAACCTCAG-TTTTATTTCCAAAACATCAATTTTCCACAATCAGGGATACTCCATC
3416740 CCCGTTATTTTCGAA
65 CCCGTTATTTTCGAA
* *
3416755 GGGATACTCCAACCTCAGTTTTATTTCCAAAACATCAATTTTTCACAATCGGGGATACTCCAGT-
1 GGGATACTCCAACCTCAGTTTTATTTCCAAAACATCAATTTTCCACAATCAGGGATACTCCA-TC
* * *
3416819 CTCGTTATTTTTGAG
65 CCCGTTATTTTCGAA
*
3416834 GGGCTACTCCAACCTCA
1 GGGATACTCCAACCTCA
3416851 TCTTTATCTC
Statistics
Matches: 84, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
79 81 0.96
80 3 0.04
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.33
Consensus pattern (79 bp):
GGGATACTCCAACCTCAGTTTTATTTCCAAAACATCAATTTTCCACAATCAGGGATACTCCATCC
CCGTTATTTTCGAA
Found at i:3423355 original size:159 final size:157
Alignment explanation
Indices: 3422715--3424281 Score: 527
Period size: 159 Copynumber: 9.9 Consensus size: 157
3422705 TGTAAAGTCT
* * * * * * *
3422715 AAGTGCGTGCCTCTAATGAGACAAACATGGATTCTAGTAATTATCATCATTCATTTTGTAATTAG
1 AAGTTCGTGCCTCAAATGAGACAAACATCGATTCTAGTAATAATCCTCATTCTTTTTGTGATTAG
* * * * * * * *
3422780 GCACTATAAATATATTCTCCTCATTAGGATAAATGATATTTATGATTTTCATTTCCCTAGAAATC
66 GCACTATAAACATATTCT-CTCATTAGGATACATGATATTGATGATTTTCTTTTGCATGGAAAGC
* *
3422845 TTTTCTTTGCCCTATTTTCCTTTAAATCA
130 TTTTCTTTCCCCTATTTT-CTTAAAATCA
* * * * * * * * * **** *
3422874 AAGTTCATACCTTAAATTAGACAAGCATCGATTCTCGTAACAACCCCCATTCTTTACAAGATTTG
1 AAGTTCGTGCCTCAAATGAGACAAACATCGATTCTAGTAATAATCCTCATTCTTTTTGTGATTAG
* * * * * * * ** * * * * *
3422939 GAAGCTA-AAACACATTCCCTTCATTCGGATGCATGACATTGATGCTTTAGTGTCGTAAGAAAAG
66 GCA-CTATAAACATATTCTC-TCATTAGGATACATGATATTGATGATTTTCTTTTGCATGGAAAG
* ** *
3423003 CTTTTCTTTCCACCAATTTTGATAAAACCA
129 CTTTTCTTTCC-CCTATTTTCTTAAAATCA
* * ** * * *
3423033 AAGTTTGT-CTCTTAAACAAGACAAACA-CGAATGCTCA-TACTAATCCTCATTCTTTTCAG-GA
1 AAGTTCGTGC-CTCAAATGAGACAAACATCG-ATTCT-AGTAATAATCCTCATTCTTTT-TGTGA
* * * * **
3423094 TTAGGCACTGTAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTAT-CAT-G
62 TTAGGCACTATAAACATATTC-TCTCATTAGGATACATGATATTGATGATTTTCTTT-TGCATGG
* *
3423157 AAAGGCTTTT-TTTCCCACTAATTTT-TGTAAAGTCT
125 AAA-GCTTTTCTTTCCC-CT-ATTTTCT-TAAAATCA
* * * *
3423192 AAGTTCGTGCCTCAAATGAGACAAACATGGATTGTAGTAATGATCTTCATTCTTTTTGTGATTAG
1 AAGTTCGTGCCTCAAATGAGACAAACATCGATTCTAGTAATAATCCTCATTCTTTTTGTGATTAG
* * * * *
3423257 GCACTATAAACAAATTCTCATCATTAGGATATATAATGTTGATGATTTTCTTTTGCATGGAAATC
66 GCACTATAAACATATTCTC-TCATTAGGATACATGATATTGATGATTTTCTTTTGCATGGAAAGC
*
3423322 TTTTCTTTGCCCTATTTTCCTTAAAATCA
130 TTTTCTTTCCCCTATTTT-CTTAAAATCA
* * * ** * * * * * **
3423351 AAGTTCAT-CCCCTAAAAGAGACAAGTATTGATTCTCGTAACAGTCCCCATT-TTTTTCAAGATT
1 AAGTTCGTGCCTC-AAATGAGACAAACATCGATTCTAGTAATAATCCTCATTCTTTTT-GTGATT
* * * * ** * * * *
3423414 GAGAAGC-C-A-AAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
64 -AG--GCACTATAAACATATTCTC-TCATTAGGATACATGATATTGATGATTTTCTTTTGCATGG
* * *
3423476 AAAGCATTTCTTTCCACC-ATTTT-TGATAGAATTA
125 AAAGCTTTTCTTTCC-CCTATTTTCT--TAAAATCA
* * * * * * * *
3423510 AAGTTTGTCCCTTAAAAATG-G-CAAATA-AGAATACTCA-TACTAATCC-C-TGT-TTTTATCA
1 AAGTTCGTGCC-T-CAAATGAGACAAACATCG-ATTCT-AGTAATAATCCTCAT-TCTTTT-T-G
* * * * * * * ** **
3423568 AGATTAGGCAGC-ATAAACTTAGTCTTCTCATTATGATACATCACAATGATGCCTTGGTTTTGCA
59 TGATTAGGCA-CTATAAACATATTC-TCTCATTAGGATACATGATATTGATGATTTTCTTTTGCA
* * * * * *
3423632 -AGAGAGACTTTT-TTCCCACCAATTTTCTTAAAGTCT
122 TGGAAAG-CTTTTCTTTCC-CCTATTTTCTTAAAATCA
* * * ** * *
3423668 AAGTTCGTGCCTCAAATGAGACGAACATGGATTCTAGTAATGATTTTCCTTCATTTTGTGATTAG
1 AAGTTCGTGCCTCAAATGAGACAAACATCGATTCTAGTAATAATCCTCATTCTTTTTGTGATTAG
* * ** * * * *
3423733 GCACTATAAACACATTCTCCTTAAAAGGATAAATGATATTGATGATTTTATTTTGCATGAAAATC
66 GCACTATAAACATATTCT-CTCATTAGGATACATGATATTGATGATTTTCTTTTGCATGGAAAGC
*
3423798 TTTTCTTTACCCTATTTTTCTTAAAATCA
130 TTTTCTTTCCCCTA-TTTTCTTAAAATCA
* * * * * * * * ***
3423827 AAGTTCAT-CCTTTAAATAAGACAAGCATCGATCCTCGCAATAGT-CTCCATTCTTTTCAAGATT
1 AAGTTCGTGCC-TCAAATGAGACAAACATCGATTCTAGTAATAATCCT-CATTCTTTTTGTGA-T
** * * ** * * ** * * * *
3423890 TAGAAGC-C-A-AAACGCACTCCCTTCATTAGGATACATGGCATTAATGCTTTGGTGTCGCAAGA
63 TAG--GCACTATAAACATATTCTC-TCATTAGGATACATGATATTGATGATTTTCTTTTGCATGG
* *
3423952 AAAGCTTTTCTTTCCACTGTTTT-TGATAAAATCA
125 AAAGCTTTTCTTTCCCCTATTTTCT--TAAAATCA
* * * * * * *
3423986 AAGTTTGT-CTCTTAAAT-ACAACAAACAT-GAATACTCA-TAAACAATCCCCATTCTTTTTGGG
1 AAGTTCGTGC-CTCAAATGA-GACAAACATCG-ATTCT-AGT-AATAATCCTCATTCTTTTTGTG
* * * * * * * **
3424047 ACTAGGCACCATAAACATAGTCTTCTTATTAAGATACATCATATTGATGCTTTGGTTTTGCAAT-
61 ATTAGGCACTATAAACATATTC-TCTCATTAGGATACATGATATTGATGATTTTCTTTTGC-ATG
* * * * **
3424111 -AAAGGCTTTT-TTCCCACCAATTTT-TGTGAAGTTT
124 GAAA-GCTTTTCTTTCC-CCTATTTTCT-TAAAATCA
* * * *
3424145 AAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAG
1 AAGTTCGTGCCTCAAATGAGACAAACATCGATTCTAGTAATAATCCTCATTCTTTTTGTGATTAG
* * * * *
3424210 TCACTATAAACATCA-TCTCCTCATTAGTATAAATGATATTGATGATTTT-TTTCGCATGGAAAT
66 GCACTATAAACAT-ATTCT-CTCATTAGGATACATGATATTGATGATTTTCTTTTGCATGGAAAG
3424273 CTTTTCTTT
129 CTTTTCTTT
3424282 GCGCTTTTTT
Statistics
Matches: 1013, Mismatches: 307, Indels: 177
0.68 0.21 0.12
Matches are distributed among these distances:
156 9 0.01
157 22 0.02
158 205 0.20
159 656 0.65
160 108 0.11
161 9 0.01
162 4 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.37
Consensus pattern (157 bp):
AAGTTCGTGCCTCAAATGAGACAAACATCGATTCTAGTAATAATCCTCATTCTTTTTGTGATTAG
GCACTATAAACATATTCTCTCATTAGGATACATGATATTGATGATTTTCTTTTGCATGGAAAGCT
TTTCTTTCCCCTATTTTCTTAAAATCA
Found at i:3423375 original size:477 final size:474
Alignment explanation
Indices: 3422465--3424573 Score: 2634
Period size: 477 Copynumber: 4.5 Consensus size: 474
3422455 CAGTCTCCAT
3422465 AGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
1 AGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
* * *
3422530 TTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCCCTTAAATATGAAAAACATGAATACTCAT
66 TTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAT
* * * * ** *
3422595 ACTAATCTTCATTATTTTTAGGATTAGGCACCAAAAACCCAGTTTTCTCATTAAGATACATCATA
131 ACTAATC-CCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAAGATACATCATA
* * * * *
3422660 TTGATTCTTTGGTTTCGCAAGAAAGGATTTTTTCCCACCAAATTTTGTAAAGTCTAAGTGCGTGC
195 TTGATGCTTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGC
* * * *
3422725 CTCTAATGAGACAAACATGGATTCTAGTAATTATCATCATTCATTTTGTAATTAGGCACTATAAA
260 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * * * * * *
3422790 TATATTCTCCTCATTAGGATAAATGATATTTATGATTTTCATTTCCCTAGAAATCTTTTCTTTGC
325 CACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
* * **
3422855 CCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATTAGACAAGCATCGATTCTCGTAACAACCC
390 CCTATTTTCCTTAAAATCAAAGTTCATACCTTAAAATAGACAAGCATCGATTCTCGTAACAGTCC
*
3422920 CCATTCTTTACAAGATTTGGA
455 CCATTCTTTTCAAGA-TTGGA
* * * * *
3422941 AGCTAAAACACATTCCCTTCATTCGGATGCATGACATTGATGCTTTAGTGTCGTAAGAAAAGCTT
1 AGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
* * * * * *
3423006 TTCTTTCCACCAATTTTGATAAAACCAAAGTTTGTCTCTTAAACAAGACAAACACGAATGCTCAT
66 TTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAT
** *
3423071 ACTAATCCTCATTCTTTTCAGGATTAGGCACTGTAAACATAGTCTTCTCATTAGGATACATCATA
131 ACTAATCC-CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAAGATACATCATA
* *
3423136 TTGATGCTTTGGTTTAT-CATGAAAGGCTTTTTTTCCCACTAATTTTTGTAAAGTCTAAGTTCGT
195 TTGATGCTTTGGTTT-TGCAAGAAAGGC-TTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGT
* *
3423200 GCCTCAAATGAGACAAACATGGATTGTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATA
258 GCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
* * * * *
3423265 AACAAATTCTCATCATTAGGATATATAATGTTGATGATTTTCTTTTGCATGGAAATCTTTTCTTT
323 AACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTT
* * * * *
3423330 GCCCTATTTTCCTTAAAATCAAAGTTCATCCCCTAAAAGAGACAAGTATTGATTCTCGTAACAGT
388 GCCCTATTTTCCTTAAAATCAAAGTTCATACCTTAAAATAGACAAGCATCGATTCTCGTAACAGT
*
3423395 CCCCATTTTTTTCAAGATTGAGA
453 CCCCATTCTTTTCAAGATTG-GA
*
3423418 AGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCAT
1 AGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
* * * * *
3423483 TTCTTTCCACCATTTTTGATAGAATTAAAGTTTGTCCCTTAAA-AATGGCAAATAAGAATACTCA
66 TTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA-GACAAACATGAATACTCA
* * * * *
3423547 TACTAATCCC-TGTTTTTATCAAGATTAGGCAGCATAAACTTAGTCTTCTCATTATGATACATCA
130 TACTAATCCCAT-TCTTT-TCAGGATTAGGCACCATAAACATAGTCTTCTCATTAAGATACATCA
* * * * *
3423611 CAATGATGCCTTGGTTTTGCAAGAGAGACTTTTTTCCCACCAATTTTCT-TAAAGTCTAAGTTCG
193 TATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTT-TGTAAAGTCTAAGTTCG
* * *
3423675 TGCCTCAAATGAGACGAACATGGATTCTAGTAATGATTTTCCTTCATTTTGTGATTAGGCACTAT
257 TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
* ** * *
3423740 AAACACATTCTCCTTAAAAGGATAAATGATATTGATGATTTTATTTTGCATGAAAATCTTTTCTT
322 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT
* * * * * *
3423805 TACCCTATTTTTCTTAAAATCAAAGTTCAT-CCTTTAAATAAGACAAGCATCGATCCTCGCAATA
387 TGCCCTATTTTCCTTAAAATCAAAGTTCATACCTTAAAAT-AGACAAGCATCGATTCTCGTAACA
* *
3423869 GTCTCCATTCTTTTCAAGATTTAGA
451 GTCCCCATTCTTTTCAAGA-TTGGA
* * * *
3423894 AGCCAAAACGCACTCCCTTCATTAGGATACATGGCATTAATGCTTTGGTGTCGCAAGAAAAGCTT
1 AGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
** *
3423959 TTCTTTCCACTGTTTTTGATAAAATCAAAGTTTGTCTCTTAAATACA-ACAAACATGAATACTCA
66 TTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATA-AGACAAACATGAATACTCA
** * *
3424023 TAAAC-AATCCCCATTCTTTTTGGGACTAGGCACCATAAACATAGTCTTCTTATTAAGATACATC
130 T--ACTAAT-CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAAGATACATC
* * *
3424087 ATATTGATGCTTTGGTTTTGCAATAAAGGCTTTTTTCCCACCAATTTTTGTGAAGTTTAAGTTCG
192 ATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCG
*
3424152 TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGTCACTAT
257 TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
* *
3424217 AAACATCA-TCTCCTCATTAGTATAAATGATATTGATGATTTT-TTTCGCATGGAAATCTTTTCT
322 AAACA-CATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCT
* * * * * * *
3424280 TTGCGCTTTTTTTTTCCTTTAAATCAAAGTTCATACCTTAAATTAGACAATCATTGATTCACGTA
386 TTGC-C--CTATTTTCCTTAAAATCAAAGTTCATACCTTAAAATAGACAAGCATCGATTCTCGTA
* *
3424345 ATAGTCTCCA--C---TC---------
448 ACAGTCCCCATTCTTTTCAAGATTGGA
* * * *
3424358 --CCAAAACACATTCCCTTCATTAGGATGCATGACATTGACGCTTTGGTATCGCGAGAAAAGCTT
1 AGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
* * *
3424421 TTCTTTTCACCATTTTTGATAGTATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCAT
66 TTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAT
* * * * *
3424486 ATTAATCCC-TATCATTTT-AGGATTAGGCACCATAAACATACTTTTCTTATTAGGATACATCAT
131 ACTAATCCCAT-TC-TTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAAGATACATCAT
* * *
3424549 ATTAATGCTTTGGTGTCGCAAGAAA
194 ATTGATGCTTTGGTTTTGCAAGAAA
3424574 AATATTTCTT
Statistics
Matches: 1414, Mismatches: 192, Indels: 70
0.84 0.11 0.04
Matches are distributed among these distances:
459 1 0.00
460 67 0.05
461 7 0.00
462 113 0.08
474 2 0.00
475 7 0.00
476 552 0.39
477 597 0.42
478 12 0.01
479 49 0.03
480 7 0.00
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.36
Consensus pattern (474 bp):
AGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
TTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAT
ACTAATCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAAGATACATCATAT
TGATGCTTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCC
TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAAC
ACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
CTATTTTCCTTAAAATCAAAGTTCATACCTTAAAATAGACAAGCATCGATTCTCGTAACAGTCCC
CATTCTTTTCAAGATTGGA
Found at i:3424652 original size:158 final size:159
Alignment explanation
Indices: 3424374--3424732 Score: 517
Period size: 158 Copynumber: 2.3 Consensus size: 159
3424364 CACATTCCCT
* * * * * * *
3424374 TCATTAGGATGCATGACATTGACGCTTTGGTATCGCGAGAAAAGCTTTTCTTTTCACCATTTTTG
1 TCATTAGGATACATCATATTAACGCTTTGGTATCGCAAGAAAAGATTTTCTTTCCACCATTTTTG
* *
3424439 ATAGTATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATATTAAT-CCCTATCATTT
66 ATAGTATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATATTAATCCCCAAACATTT
*
3424503 TAGGATTAGGCACCATAAACATACTTTTC
131 TAGGATTAGGCACCATAAACATACTCTTC
* * *
3424532 TTATTAGGATACATCATATTAATGCTTTGGTGTCGCAAGAAAA-ATATTTCTTTCCACCATTTTT
1 TCATTAGGATACATCATATTAACGCTTTGGTATCGCAAGAAAAGAT-TTTCTTTCCACCATTTTT
* *
3424596 GATAGTATTAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCATACTT-ATCCCCAAACAT
65 GATAGTATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATA-TTAATCCCCAAACAT
*
3424660 TTTAGGATTAGGCACCATAAACATAGTCTTC
129 TTTAGGATTAGGCACCATAAACATACTCTTC
* *
3424691 TCATTAGGATACATCATATTAACGCTTTGGTTTTGCAAGAAA
1 TCATTAGGATACATCATATTAACGCTTTGGTATCGCAAGAAA
3424733 GGCTTTTTTC
Statistics
Matches: 178, Mismatches: 20, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
157 1 0.01
158 101 0.57
159 76 0.43
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.36
Consensus pattern (159 bp):
TCATTAGGATACATCATATTAACGCTTTGGTATCGCAAGAAAAGATTTTCTTTCCACCATTTTTG
ATAGTATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATATTAATCCCCAAACATTT
TAGGATTAGGCACCATAAACATACTCTTC
Found at i:3424756 original size:462 final size:461
Alignment explanation
Indices: 3423896--3424756 Score: 1003
Period size: 462 Copynumber: 1.9 Consensus size: 461
3423886 GATTTAGAAG
* * * *
3423896 CCAAAACGCACTCCCTTCATTAGGATACATGGCATTAATGCTTTGGTGTCGCAAGAAAAGCTTTT
1 CCAAAACACACTCCCTTCATTAGGATACATGACATTAACGCTTTGGTATCGCAAGAAAAGCTTTT
**
3423961 CTTTCCACTGTTTTTGATAAAATCAAAGTTTGTCTCTTAAATACAACAAACATGAATACTCATAA
66 CTTTCCACCATTTTTGATAAAATCAAAGTTTGTCTCTTAAATACAACAAACATGAATACTCATAA
* * *
3424026 ACAATCCCCATTCTTTTTGGGACTAGGCACCATAAACATAGTCTTCTTATTAAGATACATCATAT
131 ACAATCCCCATTCATTTTAGGACTAGGCACCATAAACATACTCTTCTTATTAAGATACATCATAT
* * * * **
3424091 TGATGCTTTGGTTTTGCAATAAAGGCTTTTTTCCCACCAATTTTTGTGAAGTTTAAGTTCGTGCC
196 TAATGCTTTGGTGTCGCAAGAAAGAATTTTTTCCCACCAATTTTTGT-AAGTTTAAGTTCGTGCC
* * ** ** * *
3424156 TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGTCACTATAAAC
260 TCAAATGAGACAAACATGAATACTAGTAATGATCCCCAAACATTTTGTGATTAGGCACCATAAAC
* * * * * *
3424221 ATCATCTCCTCATTAGTATAAATGATATTGATGATTTTTTTCGCATGGAAATCTTTTCTTTGCGC
325 ATCATCTCCTCATTAGGATAAATCATATTAACGATTTTTTTCGCATAGAAAGCTTTTCTTTGCGC
**
3424286 TTTTTTTTTCCTTTAAATCAAAGTTCATACCTTAAATTAGACAATCATTGATTCACGTAATAGTC
390 AATTTTTTTCCTTTAAATCAAAGTTCATACCTTAAATTAGACAATCATTGATTCACGTAATAGTC
3424351 TCCACTC
455 TCCACTC
* * * *
3424358 CCAAAACACATTCCCTTCATTAGGATGCATGACATTGACGCTTTGGTATCGCGAGAAAAGCTTTT
1 CCAAAACACACTCCCTTCATTAGGATACATGACATTAACGCTTTGGTATCGCAAGAAAAGCTTTT
* ** *
3424423 CTTTTCACCATTTTTGATAGTATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCAT-A
66 CTTTCCACCATTTTTGATAAAATCAAAGTTTGTCTCTTAAATACAACAAACATGAATACTCATAA
** * * * *
3424487 TTAATCCCTA-TCATTTTAGGATTAGGCACCATAAACATACTTTTCTTATTAGGATACATCATAT
131 ACAATCCCCATTCATTTTAGGACTAGGCACCATAAACATACTCTTCTTATTAAGATACATCATAT
* *
3424551 TAATGCTTTGGTGTCGCAAGAAA-AATATTTCTTTCCACC-ATTTTTG-ATAGTATTAAAGTTTG
196 TAATGCTTTGGTGTCGCAAGAAAGAAT-TTT-TTCCCACCAATTTTTGTA-AGT-TT-AAGTTCG
* * *
3424613 T-CTCTTAAAT-ATGACAAACATGAATACTCA-TACTTATCCCCAAACATTTTAG-GATTAGGCA
256 TGC-CTCAAATGA-GACAAACATGAATACT-AGTAATGATCCCCAAACATTTT-GTGATTAGGCA
* * *
3424674 CCATAAACAT-AGTCTTCTCATTAGGATACATCATATTAACGCTTTGGTTTT-GCA-AGAAAGGC
317 CCATAAACATCA-TCTCCTCATTAGGATAAATCATATTAACGATTT--TTTTCGCATAGAAA-GC
3424736 TTTT-TTCTGAC-CAATTTTTTT
378 TTTTCTT-TG-CGCAATTTTTTT
3424757 AAAGTCTAAG
Statistics
Matches: 331, Mismatches: 53, Indels: 30
0.80 0.13 0.07
Matches are distributed among these distances:
458 1 0.00
459 4 0.01
460 82 0.25
461 105 0.32
462 134 0.40
463 5 0.02
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.37
Consensus pattern (461 bp):
CCAAAACACACTCCCTTCATTAGGATACATGACATTAACGCTTTGGTATCGCAAGAAAAGCTTTT
CTTTCCACCATTTTTGATAAAATCAAAGTTTGTCTCTTAAATACAACAAACATGAATACTCATAA
ACAATCCCCATTCATTTTAGGACTAGGCACCATAAACATACTCTTCTTATTAAGATACATCATAT
TAATGCTTTGGTGTCGCAAGAAAGAATTTTTTCCCACCAATTTTTGTAAGTTTAAGTTCGTGCCT
CAAATGAGACAAACATGAATACTAGTAATGATCCCCAAACATTTTGTGATTAGGCACCATAAACA
TCATCTCCTCATTAGGATAAATCATATTAACGATTTTTTTCGCATAGAAAGCTTTTCTTTGCGCA
ATTTTTTTCCTTTAAATCAAAGTTCATACCTTAAATTAGACAATCATTGATTCACGTAATAGTCT
CCACTC
Found at i:3424836 original size:619 final size:619
Alignment explanation
Indices: 3423912--3425195 Score: 1679
Period size: 619 Copynumber: 2.1 Consensus size: 619
3423902 CGCACTCCCT
*** * **
3423912 TCATTAGGATACATGGCATTAATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTG
1 TCATTAGGATACATAATATTAATGCTTTGGTGTCGCAAGAAAAGATTTTCTTTCCACCATTTTTG
** *
3423977 ATAAAATCAAAGTTTGTCTCTTAAATACAACAAACATGAATACTCATAAACAATCCCCATTCTTT
66 ATAAAATCAAAGTTTGTCTCTTAAATACAACAAACATGAATACTCAT-AACAATCCCCAAACATT
* * * *
3424042 TTGGGACTAGGCACCATAAACATAGTCTTCTTATTAAGATACATCATATTGATGCTTTGGTTTTG
130 TTAGGACTAGGCACCATAAACATAGTCTTCTCATTAAGATACATCATATTAACGCTTTGGTTTTG
* * *
3424107 CAATAAAGGCTTTTTTCCCACCAATTTTTGTGAAGTTTAAGTTCGTGCCTCAAATGAGACAAACA
195 CAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACA
* *
3424172 TGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGTCACTATAAACATCA-TCTCCTCATTA
260 TGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGACACTATAAACA-AATTCTCCTCATTA
* * * * *
3424236 GTATAAATGATATTGATGATTTTTTTCGCATGGAAATCTTTTCTTTGCGCTTTTTTTTTCCTTTA
324 GGATAAATGATATTGATGATTTTTTTCGCATGAAAATCTTTTCTTTGC-C--CTATTTTCCTTAA
* * * * *
3424301 AATCAAAGTTCATACCTTAAATTAGACAATCATTGATTCACGTAATAGTCTCCA-C-TC-CCAAA
386 AATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCACATAACAGTCTCCATCTTCACCAAA
*
3424363 ACACATT-CCCTTCATTAGGATGCATGACATTGACGCTTTG-GTATCGCGAGAAAAGCTTTTCTT
451 ACACATTCCCCTT-ATTAGGATGCATGACATTGACGCTTTGAGT-TCGCAAGAAAAGCTTTTCTT
* *
3424426 TTCACCATTTTTGATAGTATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATATTAA
514 TTCACCATTTTTGATAGTATCAAAGTTTGTCTCTT-AATAAGACAAACATGAATACTCATACTAA
* * *
3424491 TCCCTA-TCATTTT-AGGATTAGGCACCATAAACATACTTTTC
578 GCCCCATTC-TTTTCAGGATTAGGCACCATAAACATACTCTTC
* *
3424532 TTATTAGGATACATCATATTAATGCTTTGGTGTCGCAAGAAAA-ATATTTCTTTCCACCATTTTT
1 TCATTAGGATACATAATATTAATGCTTTGGTGTCGCAAGAAAAGAT-TTTCTTTCCACCATTTTT
** * ** *
3424596 GATAGTATTAAAGTTTGTCTCTTAAATATGACAAACATGAATACTCAT-ACTTATCCCCAAACAT
65 GATAAAATCAAAGTTTGTCTCTTAAATACAACAAACATGAATACTCATAAC-AATCCCCAAACAT
* *
3424660 TTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTAACGCTTTGGTTTT
129 TTTAGGACTAGGCACCATAAACATAGTCTTCTCATTAAGATACATCATATTAACGCTTTGGTTTT
** * * *
3424725 GCAAGAAAGGCTTTTTTCTGACCAATTTTTTTAAAGTCTAAGTTTGTGCCTCAATTGAGACAAAC
194 GCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAAC
*
3424790 ATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGACACTATAAACAAATTCTCTTCATTA
259 ATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGACACTATAAACAAATTCTCCTCATTA
3424855 GGATAAATGATATTGATGATTTTTTTCGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
324 GGATAAATGATATTGATGATTTTTTTCGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
* * *
3424920 CAAAGTTCATCCCTTAAATAAGTCAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATT
389 CAAAGTTCATACCTTAAATAAGACAAGCATCGATTCACATAACAGTCTCCA-TC--TTC------
* *
3424985 GGGAAGCCAAAACACATTCCCCTTATTAGGATGCATGACATTGATGTTTTGAGTTCGCAAGAAAA
445 ----A-CCAAAACACATTCCCCTTATTAGGATGCATGACATTGACGCTTTGAGTTCGCAAGAAAA
* * * * *
3425050 GCTTTTCTTTTCACCGTTTTTGATATTATCAAAGTTTGTTTGTTAATAAGACAAACATGAATAGT
505 GCTTTTCTTTTCACCATTTTTGATAGTATCAAAGTTTGTCTCTTAATAAGACAAACATGAATACT
*** *
3425115 CATACTAAGCCCCATTCTTTTCAGGATTAGGCATTGTAAACATAGTCTTC
570 CATACTAAGCCCCATTCTTTTCAGGATTAGGCACCATAAACATACTCTTC
* *
3425165 TCATTAGGATACATAATATTGATGCATTGGT
1 TCATTAGGATACATAATATTAATGCTTTGGT
3425196 TTTGCTAGAA
Statistics
Matches: 573, Mismatches: 67, Indels: 35
0.85 0.10 0.05
Matches are distributed among these distances:
616 56 0.10
618 5 0.01
619 232 0.40
620 98 0.17
621 2 0.00
632 34 0.06
633 139 0.24
634 7 0.01
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (619 bp):
TCATTAGGATACATAATATTAATGCTTTGGTGTCGCAAGAAAAGATTTTCTTTCCACCATTTTTG
ATAAAATCAAAGTTTGTCTCTTAAATACAACAAACATGAATACTCATAACAATCCCCAAACATTT
TAGGACTAGGCACCATAAACATAGTCTTCTCATTAAGATACATCATATTAACGCTTTGGTTTTGC
AAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAT
GGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGACACTATAAACAAATTCTCCTCATTAGG
ATAAATGATATTGATGATTTTTTTCGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
AAGTTCATACCTTAAATAAGACAAGCATCGATTCACATAACAGTCTCCATCTTCACCAAAACACA
TTCCCCTTATTAGGATGCATGACATTGACGCTTTGAGTTCGCAAGAAAAGCTTTTCTTTTCACCA
TTTTTGATAGTATCAAAGTTTGTCTCTTAATAAGACAAACATGAATACTCATACTAAGCCCCATT
CTTTTCAGGATTAGGCACCATAAACATACTCTTC
Done.