Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold407
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4418299
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 127125 characters in sequence are not A, C, G, or T
File 23 of 28
Found at i:3425830 original size:476 final size:475
Alignment explanation
Indices: 3424553--3426169 Score: 2153
Period size: 476 Copynumber: 3.4 Consensus size: 475
3424543 CATCATATTA
* * *
3424553 ATGCTTTGGTGTCGCAAGAAAA-ATATTTCTTTCCACCATTTTTGATAGTATTAAAGTTTGTCTC
1 ATGCTTTGGTGTCGCAAGAAAAGCT-TTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTC
* * * **
3424617 TTAAATATGACAAACATGAATACTCATACTTATCCCCAAACATTTT-AGGATTAGGCACCATAAA
65 TTAAATAAGACAAACATGAATACTCATACTAATCCCCAATC-TTTTCAGGATTAGGCACTGTAAA
* * *
3424681 CATAGTCTTCTCATTAGGATACATCATATTAACGCTTTGGTTTTGCAAGAAAGGCTTT-TTTCTG
129 CATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCT-
* ** *
3424745 ACCAATTTTTTTAAAGTCTAAGTTTGTGCCTCAATTGAGACAAACATGGATTCTAGTAATGATCT
193 ACCAATTTTTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAAACATGGATTCTAGTAATGATCT
* *
3424810 TCATTCATTTTGTGATTAGACACTATAAACAAATTCTCTTCATTAGGATAAATGATATTGATGA-
258 TCATTCATTTTGTGATTAGACACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGAC
*
3424874 TTTTTTTCGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAT
323 TTTCTTTCGCATGAAAATCTTTT-TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAT
* * *
3424939 AAGTCAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTC
387 AAGACAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTCGGAAGCCAAAACACATT-
*
3425004 CCCTT-ATTAGGATGCATGACATTG
451 CCCTTCATTAGGAAGCATGACATTG
* * * ** * *
3425028 ATGTTTTGAGT-TCGCAAGAAAAGCTTTTCTTTTCACCGTTTTTGATATTATCAAAGTTTGTTTG
1 ATGCTTTG-GTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTC
* * * *
3425092 TT-AATAAGACAAACATGAATAGTCATACTAAGCCCCATTCTTTTCAGGATTAGGCATTGTAAAC
65 TTAAATAAGACAAACATGAATACTCATACTAATCCCCAATCTTTTCAGGATTAGGCACTGTAAAC
* * *
3425156 ATAGTCTTCTCATTAGGATACATAATATTGATGCATTGGTTTTGCTAGAAAGGCTTTCTT-CT-C
130 ATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCTAC
* * * * ** * *
3425219 GCTAAGTTTTGTAATGTTTAAGTTCGCACCAAAAATGAGACAAACATGGATTCTAGTAGTAATCT
195 -C-AATTTTTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAAACATGGATTCTAGTAATGATCT
* * * * * *
3425284 TCATTCATTTTATGATTAGGCACTATAAACACATTCTCCTCAATAAGACAAAAGATATTGATGAC
258 TCATTCATTTTGTGATTAGACACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGAC
3425349 TTTCTTTCGCATGAAAATCTTTTTTGTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAT
323 TTTCTTTCGCATGAAAATCTTTTTT-TGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAT
* * * *
3425414 AAGGCAAGCATCGATTCTCCTAATAGTCTCCATTTTTTTCAAGATTCGGAAGCCAAAACGCATTC
387 AAGACAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTCGGAAGCCAAAACACATTC
* **
3425479 CTTTCATTAGGAAAAATGACATTG
452 CCTTCATTAGGAAGCATGACATTG
* * *
3425503 ATACTTTGGTGTTGCAAGAAATGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCT
1 ATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCT
* * *
3425568 TAAACAAGACAAACAAGAATAGTCATACTAAT-CCCAATTCTTTTCAGGATT-GGACACTGTAAA
66 TAAATAAGACAAACATGAATACTCATACTAATCCCCAA-TCTTTTCAGGATTAGG-CACTGTAAA
* * *
3425631 CATAGTCTTCTCATTAGGATACATGATATGGATGCTTTGGTTATGCAAGAAAGGCTTTCTTCCTA
129 CATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCTA
*
3425696 CCAATTTTTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAAATATGGATTCTAGTAATGATCTT
194 CCAATTTTTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAAACATGGATTCTAGTAATGATCTT
* *
3425761 CATTCATTTTGTGATTAGTCACTATAAACACATTAC-CCTCATTAGGATAAATGATATTCATGAC
259 CATTCATTTTGTGATTAGACACTATAAACACATT-CTCCTCATTAGGATAAATGATATTGATGAC
* * * * * * * **
3425825 TTTCTTTTGCATGGAAAGCTTTACTTTGCCCTATTTTCCTTTAAATCAAAGTTTATACCAAAAAT
323 TTTCTTTCGCATGAAAATCTTT-TTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAT
* * * * *
3425890 AAGACAAGCATCGATTATCATAATAGTCTCCATTCTTGTCAAGATTTGGAAGCCATATCACATTC
387 AAGACAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTCGGAAGCCAAAACACATTC
3425955 CCTTCATTAGGAAGCATGACATTG
452 CCTTCATTAGGAAGCATGACATTG
* * * *
3425979 ATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCC
1 ATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCT
* * * * *
3426044 TAAATATGACAAATATGAATACTCATACTAATCCCCAATCTTTTTAGGATTAGGC-TTGATAAAG
66 TAAATAAGACAAACATGAATACTCATACTAATCCCCAATCTTTTCAGGATTAGGCACTG-TAAAC
* * * *
3426108 ATAGTCTTCTCATTAGAATACATCATATTGATGCTTTGGTTTTACAACAAAGGCTTTATTCC
130 ATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCC
3426170 CTAATCTTTT
Statistics
Matches: 990, Mismatches: 132, Indels: 39
0.85 0.11 0.03
Matches are distributed among these distances:
472 1 0.00
473 5 0.01
474 216 0.22
475 251 0.25
476 503 0.51
477 13 0.01
478 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (475 bp):
ATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCT
TAAATAAGACAAACATGAATACTCATACTAATCCCCAATCTTTTCAGGATTAGGCACTGTAAACA
TAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCTACC
AATTTTTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCA
TTCATTTTGTGATTAGACACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGACTTT
CTTTCGCATGAAAATCTTTTTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGA
CAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTCGGAAGCCAAAACACATTCCCTT
CATTAGGAAGCATGACATTG
Found at i:3429022 original size:476 final size:476
Alignment explanation
Indices: 3426917--3447827 Score: 21931
Period size: 476 Copynumber: 44.3 Consensus size: 476
3426907 TTGATAGAAC
* * * * *
3426917 CAAACATGAATTCTCATACTAATCCCTATTCTTTAT-AGGATTAGGCACCATATACATGGTTTTC
1 CAAACATGAATACTCATACTAATCCCCATTCTTT-TCAGGATTAGGCACCATAAACATAGTCTTC
** * * * * *
3426981 TCAAAAGGACACAGCATATTGATGCTTTGGTTTCGTAAGAATGGTTTTTTTCCCACCAATTTTTG
65 TCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTG
* *
3427046 TAAAATCTCAA-TTCCTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTT
130 TAAAGTCT-AAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTT
* * * * *
3427110 TATGATTTGGCACTATAAAAACCTTC-CCTCATTAGGATAAATGATAATGATGATTTTCTTTTGC
194 TGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGC
* * * * *
3427174 ATGGAAATCTTTTATTAGCCCTATTTTCCTTAAAATCAAAGTTCAT-CTCTAAAATAGGACAGGC
259 ATGGAAATCTTTTATTTGCCCTATTTTCCTTTAAATCAAAGTTCATAC-CTTAAATAAGACAAGC
* * * * *
3427238 ATCGATTCTCGCAACAATCTCCATTCTTTTCAAGATTAGG-AGCCAAAAAACATATTCCCTTTAT
323 ATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCC--AAAACACATTCCCTTCAT
* * * * *
3427302 T-AGTATGCCTGACATTGATGCTTTGGTGAC-CTAAGAAAAGCTTTTCTTTCCACCGTTTTTTAT
386 TAAG-ATACATGACATTGATGCTTTGGTGTCGC-AAGAAAAGCTTTTCTTTCCACCATTTTTGAT
* * *
3427365 ATAAACAAAGTTTATCTCTTAAATATGA
449 AGAATCAAAGTTTGTCTCTTAAATATGA
* * *
3427393 AAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGTACCATAAACATAGTTTTCT
1 CAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCT
* * * *
3427458 CATTAGGATACATCATATTGATTCTTTGGTTTCACTAGAAAGGCTTTTCTCCCACCAATTTTTGT
66 CATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGT
* * *
3427523 AAAGTCTATGTTCGTGCCTCAAATGAGACAAATATGGATTCTA-TAATGGTCTTCATTCATTTTG
131 AAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTG
* *
3427587 TGATTAGGCACTATAAGCACATTCTCCTCATTAGGATAAATGACT-TTGATGATTTTATTTTGCA
196 TGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGA-TATTGATGATTTTCTTTTGCA
* * * * * *
3427651 TGAAAATCTTTTCTTTGCCCTATTTTTCTTAAAATCAAAGCTCATACCTTAAATAGGACAAGCAT
260 TGGAAATCTTTTATTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCAT
** * * * * * *
3427716 TAATTATTGTAATAGTCTCCACTCTTTTCAAGATTTGGAAGCCAAAACACATTCCCTTCATTAGG
325 CGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAAG
* * * *
3427781 A-AGCATGACAATGACGATTTGGTGTGGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT
390 ATA-CATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT
*
3427845 CAAAGTTTGTCTCTTAAAAATGA
454 CAAAGTTTGTCTCTTAAATATGA
*
3427868 CAAACATGAATACTCCA-ACAAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTC
1 CAAACATGAATACT-CATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTC
* * * * * *
3427932 GCA-TAGGATACATGATATTGTTGTTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAAATTTTG
65 TCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTG
* * * * * *
3427996 TGAACTCTAAGTCCATGCCTCAAATGGGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTT
130 TAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTT
* *
3428061 GTGATTAGGTACTATAAACACATTCTCCTCATTAGGATAAAAGATATTGATGA-TTT-TTTTGCA
195 GTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCA
* * *
3428124 TGGAAATCTTTTATTTGCCCTATTTTCCTTGAAATCAATGTTCATGCCTTAAATAAGACAAGCAT
260 TGGAAATCTTTTATTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCAT
* * * * * * * * * *
3428189 TGATTCTCGTAATAATCGCTATTTTTTTCAAGATTAGGAAGCCAAAGCATATTCCCCTCATT-AG
325 CGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAAG
* * * * * *
3428253 AATGCACGACATTGATGCTTTGGTATCGCAAGAAAAGCTTTTCTTTCCACCA-TTTTCAAAGGGA
390 -ATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATA-GAA
* * * *
3428317 TCAAATTTTATCTTTTAAATAAGA
453 TCAAAGTTTGTCTCTTAAATATGA
* * * * * *
3428341 CAAACTTGAATAGTCATACTAATCCCCATTCTTTTCATGATTAGGCTCCGTAAACTTAGTCTTCT
1 CAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCT
* * * *
3428406 CATTAGGATACATAATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATATTTGT
66 CATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGT
* *
3428471 AAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTA
131 AAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTG
* * *
3428536 TGATTTGGCACTATAAACACCTTCCCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAT
196 TGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAT
* * * * *
3428601 GGAAATCTTTTGTTTGCCTTATTTTCCTTTAAATCAAAGTTCATACCCTAAACAAGACAAGCGTC
261 GGAAATCTTTTATTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATC
* * * ** * ** *
3428666 GATTATTGTAATAGTCTCCACCCTTTTCAAGATTTGGAAGTGAAAACACATTCCTTTCATTAAGA
326 GATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAAGA
* * * * * * *
3428731 TGCATGACATTAACGCTTTGGTGTCGCAAGAAAA-ATGTTTCTTTCCACCATTTTTTATAGTATT
391 TACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCT-TTTCTTTCCACCATTTTTGATAGAATC
3428795 AAAGTTTGTCTCTTAAATATGA
455 AAAGTTTGTCTCTTAAATATGA
* * *
3428817 CAAACATGAATACTCATACTTATCCCCATACATTTCAGGATTAGGCACCATAAAACATAGTCTTC
1 CAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCAT-AAACATAGTCTTC
* * *
3428882 TCATTAGGATACATCATATT-AGCGCTTTGGTTTCACAAGAAAGGCTTTTTTCCAACCAATTTTT
65 TCATTAGGATACATCATATTGA-TGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTT
* * * * *
3428946 TTAAAGTCTTAGTTCATGCCTCAAATAAGACAAACATGGACTCTAGTAATGATCTTCATTCATTT
129 GTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTT
*
3429011 TGTGATT-GGCACTATAAACACATTCT-C-C--T----T--AT--TA--G--G------TTTTGT
194 TGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGC
* * **
3429053 ATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAATGTTCATACCTTAAATAAGGGAAGCA
259 ATGGAAATCTTTTATTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCA
* * ** * * * * * *
3429118 TCGATTATTGTAGTAGACTCCACTCTTTTCAAGTTTTGGAAGCCAAAACACATTCTCTTCATTAG
324 TCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAA
* * * * * *
3429183 GATGCATGAAATTGATGCTTTGGTGTCGTAAGAAAAACTTTTCTTTCCACCCTTTTTGATATAAT
389 GATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT
* *
3429248 CAAAGTTTGTTTGTTAAATATGA
454 CAAAGTTTGTCTCTTAAATATGA
* * * * ***
3429271 CAAATATGAATAGTCATACTAAGCCCCATTCTTTTTAGGATTAGGCATTGTAAACATAGTCTTCT
1 CAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCT
* * * * * * * *
3429336 CATTAGGATACATAATATTGATGCATTGGTTTTGCTAGAAAGGCTTTCTTCTCACTAAGTTTTGT
66 CATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGT
* ** * * *
3429401 AAAGTCTAAGTTCATGCCAAAAATGAGACAAACAAGGATTCTAGTAGTAATCTTCATTCATTTTG
131 AAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTG
* * * * *
3429466 TGATTAGGCACAATAAACACATTCTTCTCAATAGGATAAAAGATATTGATGACTTTCTTTTGCAT
196 TGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAT
* * *
3429531 GGAAATCTTTT-TTGTGCCCTATTTT-CTTTAAATCAAAGTTGATCCCTTAAATAAGGCAAGCAT
261 GGAAATCTTTTATT-TGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCAT
* * * * * * *
3429594 CGATTCTCCTAATAGTCTCCATTTTTTTTCAAGATTCGGAAGCCAAAACGCATTCCTTTCATTAG
325 CGATTCTCGTAACAGTCTCCA-TTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAA
* * * * *
3429659 GAAAAATGACACTGATACTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT
389 GATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT
* * *
3429724 CAAAGTTTGTCTCCTAAACAAGA
454 CAAAGTTTGTCTCTTAAATATGA
* * * **
3429747 CAAACAAGAATAGTCATACTAATCCCAATTCTTTTCAGGATT-GGACACTGTAAACATAGTCTTC
1 CAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGG-CACCATAAACATAGTCTTC
* * * * * *
3429811 TCATTAGGATACATGATATGGATGCTGTGGTTTTGCAAGAAAGGCTTTCTTCCTACCAATTTTTG
65 TCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTG
** * *
3429876 TAAAGTCTAAGTTTATACCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCATTTT
130 TAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTT
*
3429941 GTGA-TAGGCACTATAAACACATTAC-CCTCATTAGGATAAATGATATTCATGATTTTCTTTTGC
195 GTGATTAGGCACTATAAACACATT-CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGC
* * * **
3430004 ATAGAAAGC-TTTACTTTGCCCTATTTTCCTTTAAATCAAAGTTTATACCAAAAATAAGACAAGC
259 ATGGAAATCTTTTA-TTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGC
* * * * * * *
3430068 ATCGATTATCATAATAGTCTCCATTCTTGTCAAGATTTGGAAGCCATATCACATTCCCTTCATTA
323 ATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTA
* * **
3430133 GGA-AGCACGACATTGATGCTTTGGTGTCATAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGA
388 AGATA-CATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGA
* *
3430197 ATCAAAGTTTGTCTCCTAAATACGA
452 ATCAAAGTTTGTCTCTTAAATATGA
* *** *
3430222 CAAATATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCTTGATAAAGATAGTCTTCT
1 CAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCT
* * * ** * * * * *
3430287 CATTAGAATACATCATATTGACGCCTTGGTTTTACAACAAAGGCTTTATTCCCTCTAATTTTTAT
66 CATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGT
* * * * * * *
3430352 AAGGTCTTAGTTCGTGTCTCAAATGAGACAAACATGGATTCCAATAATGAGCTTTATTCATTTTG
131 AAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTG
** ** * * *
3430417 TGGCTAGGCAC-AGTAAATGCTTTCTCCTCATTTGGATAAATGATATTGATGATTTTCTTTTACA
196 TGATTAGGCACTA-TAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCA
* * ** * * * * *
3430481 TGAAAATCTTTTCTTCACCCTATTGTCCTTAAAATCTAAGATCATCCCTTAAATAAGACAAGCAT
260 TGGAAATCTTTTATTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCAT
* * * * *
3430546 TGATTCTCATAATAGTCTCTATTCTTTT-AATGATTGGGAA-CCAAAAACACATTCTCTTCATTA
325 CGATTCTCGTAACAGTCTCCATTCTTTTCAA-GATTGGGAAGCC-AAAACACATTCCCTTCATTA
* * * * * * *
3430609 GGATACATGACATTTATGTTTTGAG-GCCGCAAGAAACGCTTTTCTTTTCACCGTTTTTGATAGA
388 AGATACATGACATTGATGCTTTG-GTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGA
*
3430673 ATCAAAGTTTGTCTCTT-AATAAGA
452 ATCAAAGTTTGTCTCTTAAATATGA
* * * * * * *
3430697 CAAACATGAATGCTTAAACTAATCTCCATTCTTTTCAGGATTAGGCACTATAAATATAGTCTTCA
1 CAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCT
* * * *
3430762 CATTAGGATACA-CGATATTGTTGTTTTGGTTTCACAAGAAAGGCATTTTTCCCACCAA-TTTTG
66 CATTAGGATACATC-ATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTG
* * * * *
3430825 TGAAGTCTAAGTTCGTGCCTCAAAT-ATGATAAACATGGATTCTAATTATGATCTTCATTCAATT
130 TAAAGTCTAAGTTCGTGCCTCAAATGA-GACAAACATGGATTCTAGTAATGATCTTCATTCATTT
* *
3430889 TGTGATTAGGCACTACAAACACATTCTCCTCATTAGGATAAATGATATTTATGATTTTCTTTTGC
194 TGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGC
* * * * * *
3430954 -T-----TCTTTTCTTTGCCCTATTTTCCTTAAAATCTACGTTCATCCCTTAAACAAGACAAGCA
259 ATGGAAATCTTTTATTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCA
* * * * * *
3431013 TCGATTCTCGCAACAGTCTCTATTCTATTCATGATTGGGAA-CCAAAAAAGCAAATTCCCTTCCT
324 TCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCC--AAAA-CACATTCCCTTCAT
* * * *
3431077 T-AGTATTCATGACATTGACGCTTTGGTATTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATA
386 TAAG-ATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATA
3431141 G-----AA--------C----------
450 GAATCAAAGTTTGTCTCTTAAATATGA
** * * *
3431145 CAAACATGAATACTCATACTAATCCCTGTTCTTTAT-AGGATTAGGCACCATATACGTGGTCTTC
1 CAAACATGAATACTCATACTAATCCCCATTCTTT-TCAGGATTAGGCACCATAAACATAGTCTTC
** * * * * * *
3431209 TCAAAAGGATACACCATATTGATGCTTTGGTTTTGTAAGAATGGCTTTTTTCCCCCCAATTTTCG
65 TCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTG
* * * * * * *
3431274 TAAAATCTCAGTTCCTGCCTTAAATGAGAGAAACATGGATTCTAGTAATAATCGTCATTCATTTT
130 TAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTT
* * * * * *
3431339 ATGATTTGGCACTATAAAAACCTTCCCCTCATTAGGATAAATGATAATGATGATTTTCTTTTGCA
195 GTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCA
* * * *
3431404 TAGAAATCTTTTATTAGCCCTATTTTCCTTAAAATCAAAGTTCAT-CTCTTAAATAAGACAGGCA
260 TGGAAATCTTTTATTTGCCCTATTTTCCTTTAAATCAAAGTTCATAC-CTTAAATAAGACAAGCA
* * * * * *
3431468 TCGATTCTCGCAACAATTTCCATTCTTTTCAAGATTAGG-AGCCAAAAAACATATTCCTTTCATT
324 TCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCC--AAAACACATTCCCTTCATT
* * * *
3431532 -AGTATGCCTGACATTGATGCTTTGGTGAC-CTAAGAAAAGCTTTTCCTTCCACCATTTTTGATA
387 AAG-ATACATGACATTGATGCTTTGGTGTCGC-AAGAAAAGCTTTTCTTTCCACCATTTTTGATA
* *
3431595 TAATCAAAGTTTATCTCTTAAATATGA
450 GAATCAAAGTTTGTCTCTTAAATATGA
*
3431622 CAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGTACCATAAACATAGTCTTCT
1 CAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCT
** * * *
3431687 CATTAGGATACATCATATTGATTATTTGGTTTCACTAGAAAGGCTTTTCTCCCACCAATTTTTGT
66 CATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGT
* * *
3431752 AAAGTCTATGTTCGTGCCTCAAATGAGACAAATATGGATTCTA-TAATGGTCTTCATTCATTTTG
131 AAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTG
*
3431816 TGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGACT-TTGATGATTTTATTTTGCA
196 TGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGA-TATTGATGATTTTCTTTTGCA
* * * * * *
3431880 TGAAAATCTTTTCTTTGCCCTATTTTTCTTAAAATCAAAGCTCATACCGTAAATAAGACAAGCAT
260 TGGAAATCTTTTATTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCAT
* * * * * * * *
3431945 TGATTATTGTAATAGTCTCCACTCTTTTCAAGATTTGGAAGCCAAAACATATTCCCTTCATTAGG
325 CGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAAG
* * * *
3432010 A-AGCATGACAATGACGATTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT
390 ATA-CATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT
* *
3432074 CAAAGTTTGTCTCTTAAAAATGT
454 CAAAGTTTGTCTCTTAAATATGA
* * *
3432097 TAAACATGAATACTCCA-ACAAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTC
1 CAAACATGAATACT-CATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTC
* * * * * *
3432161 ACA-TAGGATACATGATATTGTTGTTTTGGTTTCGCAAGAAAGGCATTTTTCCCCACCAAATTTT
65 TCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTTTTCCCACCAATTTTT
*
3432225 GTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCCAGTAATGATCTTCATTCATTT
129 GTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTT
* * *
3432290 TGTGATTCGGTACTATAAACATATTCTCCTCATTAGGATAAATGATATTGATGATTTT-TTTTGC
194 TGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGC
* * * *
3432354 ATGGAAATCTTTTAGTTGCCCTATTTTCCTTGAAATCAACA-TTCATGCCTTAAATAAGATAAGC
259 ATGGAAATCTTTTATTTGCCCTATTTTCCTTTAAATCAA-AGTTCATACCTTAAATAAGACAAGC
* * * * * * * *
3432418 ATTGATTCTCGTAATAGTCGCTATTCATTTCAAGATTAGGAAGCCAAAACATATTCCCCTCATT-
323 ATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTA
* * * *
3432482 AGAATGCGTGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCA-TTTTCAAAGG
388 AG-ATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATA-G
* * *
3432546 AATCAAAATTTGTCTTTTAAATAAGA
451 AATCAAAGTTTGTCTCTTAAATATGA
* ** * * *
3432572 CAAACATGAATAGTCATACTAATCCCCCCATTCTTTTCCTGATTAGGCTCCGTAAACTTAGTCTT
1 CAAACATGAATACTCATACTAAT--CCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTT
* * * * * *
3432637 CTCATTACGATACATAATATTGATGCTTTGGTTTTGCAAGCAAGGCTTTCTTCCCACCAATTTTC
64 CTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTT
* *
3432702 GTAAAATCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTT
129 GTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTT
* * * * *
3432767 TATGATTTGGCACTATAAACACCTTCCCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGG
194 TGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGC
* * * * **
3432832 ATGGAAATCTTTTGTTTGCCCTATTTTCCTTTAAGTCAAAGTTCATACCCTAAACAAGACAAGTG
259 ATGGAAATCTTTTATTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCA
* * * * * * ** *
3432897 TCGATTATTGTAATAGTCTCCACTCTTTACAAGATTTGGAAGTGAAAACACATTCCATTCATTAA
324 TCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAA
* * * * * * *
3432962 GATGCATGACATTGACGCTTTGGTGTCGCAAGAAAAACATTTCTTTCCTCTATTTTTGATAGTAT
389 GATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT
*
3433027 TAAAGTTTGTCTCTTAAATATGA
454 CAAAGTTTGTCTCTTAAATATGA
* * *
3433050 CAAACATGAATACTCATACTTATCCCCATACATTTCAGGATTAGGCACCATAAACATAGTCTTCT
1 CAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCT
* * * *
3433115 CATTAGGATACATCATATTAACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCGACCAATTTTTTT
66 CATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGT
* *
3433180 AAAGTCTCAGTTCGTGCCTCAAATGATACAAACATGGATTCTAGTAATGATCTTCATTCATTTTG
131 AAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTG
* * * **
3433245 TGATTAAGCA-TAATAAGCACATTCTCCTCATTAAGATAAATGATATTTCTGATTTTCTTTTGCA
196 TGATTAGGCACT-ATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCA
* * * * * *
3433309 TAGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCTAAGTTCATCCCTTAAATAAGACATGCAT
260 TGGAAATCTTTTATTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCAT
* * * **
3433374 CGATTCTCGCAATAGTCTCCATTATTTTCAAGATTGGGAACGAAAAAACACATTCCCTTCATT--
325 CGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAA-GCCAAAACACATTCCCTTCATTAA
* * * ** * *
3433437 -ATGCATGACATTGATGCTTTGGTGTTGCAAGAGAAGCTTTTC-TTCCACTGTTCTTGATAAAAT
389 GATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT
* *
3433500 CAAAGTTTATCTTTTAAAT-TCGA
454 CAAAGTTTGTCTCTTAAATAT-GA
* * * * *
3433523 CAAAAATGAATACTCATACTAATCCCCTTTCTTTTTAGGATTAGGCACCGTAAACATAGTCTCCT
1 CAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCT
* ***
3433588 CATTAGGATACATCATATCGATGCTTCAACTTT-GCAAGAAAGGCTTTTTTCCCACCAATTTTTG
66 CATTAGGATACATCATATTGATGCTT-TGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTG
* ** * * *
3433652 TAAAGTCTCAGTTCGTAACTCGAATGAGACAAACACGGATTCTAGTAATGATCTTCAATCA--TT
130 TAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTT
* ** * * *** * **
3433715 ATGATTAGGCACTATAAACATTTTCCCCTCATTAGGATAAATAAGACAAACAAGAATACTCTTTT
195 GTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAT--GATATTGATG-ATTTTCTTTT
* * ** * * * *
3433780 GCATGGTAATTTTTTCCTTGCCTTATTTTCCTTAAAATCTAAGTTCAT-CTCTTAAATAAGATAA
257 GCATGGAAATCTTTTATTTGCCCTATTTTCCTTTAAATCAAAGTTCATAC-CTTAAATAAGACAA
* * * *
3433844 GCATCGATTCTCGTAATAGTCTCCATTCTTTTCATGATTGGG-ATCCAAAAACACATTCCCTTCG
321 GCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCC-AAAACACATTCCCTTCA
* ** * *
3433908 TTAGGATACATGACATTGATGCTTTGGTGTCGCAAG-AAAGCAGTTCTTTCCATCATTTTTAATA
385 TTAAGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATA
*
3433972 GAATCAAAGTTTGTCTCTTAAATAAGA
450 GAATCAAAGTTTGTCTCTTAAATATGA
* * *
3433999 TAAACATGAATAATCCA-ACTAATCCTCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTC
1 CAAACATGAATACT-CATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTC
* * * * *
3434063 ACATTAGGATACA-CGATATTG-TCCTTTTGGTTTCGCAAGAAAGAC-ATTTTCCCACCAGTTTT
65 TCATTAGGATACATC-ATATTGATGC-TTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTT
* * * * * * * * *
3434125 CT-TAAAGTCAAAGTTCATTCCTCAATTGAGACGAACATTGATTCTAGGATTGATCTTCATACAT
128 -TGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCAT
* * * *
3434189 TTTGTGATTAGGCACTATGAACACATTCTTCTCATTAGGATAAATGACATTGATGACTTTCTTTT
192 TTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTT
* * *
3434254 GAATTGAAATCCTTTATTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAG
257 GCATGGAAATCTTTTATTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAG
* * * *
3434319 CAACGATTCTCGTAACAGTCTCTATTTTTTTCAAGATTGGGAAGCCAAAACACATTCCCCTCATT
322 CATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATT
* * * * * *
3434384 AGGATACATGACATTGATGCTTTTGTGTCGCAAGAAAGGCTTTTATCTCCACCGTTTTTGATAGA
387 AAGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGA
* * *
3434449 ATCATAGTTTGTCTTTTAAATATAA
452 ATCAAAGTTTGTCTCTTAAATATGA
* * * * * *
3434474 CAAACTTGACTACTCATACTAATCCCCGTTCTTTTCAAGATTCGGCACCATAAA-ATTGGTCTTC
1 CAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACA-TAGTCTTC
* ** * * * * *
3434538 TCATAAGGATACATCATATTGATGCTTTGGAATCGCAAGAATGGCTTTTCTCCAACCGGATTTCT
65 TCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACC-AATTTTT
* **
3434603 -TAAAGTCTAAGTTCATGCCTCAAATGAGAGGAACATGGATTCTAGTAATGATCTTCATTCATTT
129 GTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTT
* * *
3434667 TGTGATTAGGCACTATAAACACATTCTCCTCATTAGAATAAATGATTTTGATGATTTTCTTTCGC
194 TGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGC
* * * * * * * * **
3434732 TTGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCTAAGTTCATCCCGTAAATAAGATAAAAA
259 ATGGAAATCTTTTATTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCA
* * * * * *
3434797 TTGATTCTCGCAACAATCTCCACTCTTTTCATGATTGGGAA-CCAAAAAACACATTCCCTTCA-G
324 TCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCC--AAAACACATTCCCTTCATT
* *
3434860 AAG-TACGCATGACATTGATGCTTTAGTG-CTGCAAGAAAAGCTTTTCTTTCTC-CCGTTTTTGA
387 AAGATA--CATGACATTGATGCTTTGGTGTC-GCAAGAAAAGCTTTTCTTTC-CACCATTTTTGA
* * **
3434922 TAGAATCCAAGTTTGCCTCTTAAATAAAA
448 TAGAATCAAAGTTTGTCTCTTAAATATGA
* * * * * *
3434951 CAAACAAGAATACT-TTAACTAATCCCTATTGTTTTCAGGATTAGGGACCATAAACATAGTCTTT
1 CAAACATGAATACTCAT-ACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTC
* * * *
3435015 TCATTAGGATACA-CGATATTGACGCTTTGGTTTCG-AAGAAAGGC-TTTATCCTTACCAAGTTT
65 TCATTAGGATACATC-ATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCC-CACCAATTTT
* * *
3435077 TGTAAAGTCTAAGTTCGTGCCCCAAATGAGACAAACATGGATTCTGGTAATGATCTTCATGCATT
128 TGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATT
** * * *
3435142 TCATGATTAGGCACTATAAACACATTCCCCTCATTATGATAAATGATATTGATGATTTTTTTTTG
193 TTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTG
* * * * *
3435207 CATGAAAATCTTTTATTTGCCTTATTTT-CTGTTAAATCAAAGATCATATCTTAAATAAGATAAG
258 CATGGAAATCTTTTATTTGCCCTATTTTCCT-TTAAATCAAAGTTCATACCTTAAATAAGACAAG
* * * *
3435271 CATCGATTCTCGTAACAATCTCAATTCTTTTCAAGATTGGGAAGCTAAAACACATTCCCCTCATT
322 CATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATT
* ** * *
3435336 AGGATACACAACATTGAGGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCCACCATTTTTGATAGA
387 AAGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGA
* *
3435401 ATCATAGTTTGTCTCCTAAATATGA
452 ATCAAAGTTTGTCTCTTAAATATGA
* * ** * * * * *
3435426 AAAACATGAATACTCATACCAATCCCTGTTCTTTTTAAGATTAAGCACCATAAAAATGGTCTTCT
1 CAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCT
* ** * * * **
3435491 CATAAGGATACATCATATTGATGCTTTGGAATCGCAAGAATGGCTTTTCTCCAACCGGTTTTCT-
66 CATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTT-TG
* *
3435555 TAAAGTCTAAGTTCATGCCTCAAATGAGACGAACATGGATTCTAGTAATGATCTTCATTCATTTT
130 TAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTT
* * *
3435620 GTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATTTTGATGATTTTCTTTCGCT
195 GTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCA
* * * * * * * * **
3435685 TGGAAATCTTTTCTTTACCTTATTTTCCTTAAAATCTAAGTTCATCCCATAAATAAGATAAAAAT
260 TGGAAATCTTTTATTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCAT
* * * *
3435750 CGATTCTCGTAACAATCTCCACTCTTTTCATGATTGGGAA-CCAAAAAACACAAT-CC--C--T-
325 CGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCC--AAAACACATTCCCTTCATTA
*
3435808 ---T---T-ACATTGATGCTTTAGTGTCGCAAGAAAAGCTTTTCTTTCC-CTCATTTTTGATAGA
388 AGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAC-CATTTTTGATAGA
* ** *
3435865 ATCCAAGTTTGTCTCAAAAATAAGA
452 ATCAAAGTTTGTCTCTTAAATATGA
* * * * *
3435890 CACACCA-AAATACTC-TAACTAATCCCCTTTCTTTTTAGGATTAGGCACCATAAGCATAGTCTT
1 CA-AACATGAATACTCAT-ACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTT
* * * * *
3435953 CTCATTAGGATACCTGATATTAATGCTTTGGTTTCG-AAGAAAGGC-TTTATCCTCACCAAGTTT
64 CTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCC-CACCAATTTT
* * * * *
3436016 TGTAAAGTCTAAGTTTGTGCCCCAAATGAGACAAACATGGATTTTGGTAATGATCTTCATGCATT
128 TGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATT
* * * *
3436081 TCGTGATTAGGCACTATAAGCACATTC-CGCTTATTAGGATAAATGATATTGATAATTTTCTTTT
193 TTGTGATTAGGCACTATAAACACATTCTC-CTCATTAGGATAAATGATATTGATGATTTTCTTTT
* * *
3436145 GCATGAAAATCTTTTATTTGTCCTATTTT-CTGTTAAATCAAAGTTCATATCTTAAATAAGACAA
257 GCATGGAAATCTTTTATTTGCCCTATTTTCCT-TTAAATCAAAGTTCATACCTTAAATAAGACAA
* *
3436209 GCATCGATTCTCGTAACAGTCTCTATTCTTTTCAAGATTGGGAAGCCAAAACACGTTCCCTTCAT
321 GCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCAT
* ** * *
3436274 T-AG-TACGCATGACATTGATGCTTTGGTGTCGCAAGAAATGCTGCTCTTTCCACCGTTTTTGTT
386 TAAGATA--CATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGAT
* * *
3436337 ATATTCAAAGTTTGTCTCTTAAATAAGA
449 AGAATCAAAGTTTGTCTCTTAAATATGA
* * * * * *
3436365 AAAACAAGAATACTCTTACTAATCCCTATTTTTTTCAAGATTAGGCACCATAAACATAGTCTTCT
1 CAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCT
* * * *
3436430 CATTAGGATACGTCATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTTCTCACTAATTTTTGT
66 CATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGT
*
3436495 AAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAT-G---C---T--TCA-C-TCA--C--TTTG
131 AAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTG
** * *
3436545 TGATTAGGTGCTATAAACACATTCTCCTCATTAGGAT-AA--ATATTGTTGACTTTCTTTTGCAT
196 TGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAT
* * * * * *
3436607 GTAAATC-ATTCTTTACCCTATTTT-CTTTAAAAT-ATAAGTTCAT-CTGTTAAATAAGACAAGG
261 GGAAATCTTTTATTTGCCCTATTTTCCTTT-AAATCA-AAGTTCATAC-CTTAAATAAGACAAGC
** * * * * * *
3436668 ATCGATTCTTATAATAGTCTCCATTCTTTTCATGATTGGGAA-CTAAAAACGCATTCTCTTCGTT
323 ATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGC-CAAAACACATTCCCTTCATT
* * * *
3436732 AGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCATTTCTTTCCACCGTTTTTTGATAG
387 AAGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACC-ATTTTTGATAG
* *
3436797 AATCAACGTTTGTCTCTTAAATAAGA
451 AATCAAAGTTTGTCTCTTAAATATGA
* * *
3436823 CAAACATGAATACTCCA-ACAAATCCCCATTCTTTTCAGGACTAGGCACCATAAACATAGGCTTC
1 CAAACATGAATACT-CATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTC
** * * * * * * *
3436887 AAATTAGGATACATGATATTGTTGTTTTGGTCTCGCAGGAAAGGC-ATTTTCCCACCAGTTTTCT
65 TCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTT-T
* ** * * * *
3436951 -TAAAGTCTAAGTTTGTTTCTCAAATGAGACGAACATGGATTCTGGTATTGATCTTCCTTCATTT
129 GTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTT
* * ** * *
3437015 TATGATTAGGCATTATAAACACATTCTCCTTGTTAAGATAAATGATATTGATGATTTTATTTTGC
194 TGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGC
* * * * ** *
3437080 ATGGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATCAAAGTTTACCCCTTAAATAAAACAAGCA
259 ATGGAAATCTTTTATTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCA
* *
3437145 TCGATTCTCATAA-A------A-AC----C---------AA---AAAACACATTCCCCTT-ATTA
324 TCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATT-CCCTTCATTA
* * * * * *
3437185 GGACACATGACATTGATGCTTCGGTGTCGCAAGAAAAGCTTTCCTTTTCACCGTTTTTGATAGAA
388 AGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAA
* * *
3437250 TCATAGTTTTTCTCTTTAATATGA
453 TCAAAGTTTGTCTCTTAAATATGA
* * * *
3437274 CAAACTTGAATACTCATACTAATCCCTATTC-TTTCTAGGATTAGGCACCATAAAAATGGTCTTC
1 CAAACATGAATACTCATACTAATCCCCATTCTTTTC-AGGATTAGGCACCATAAACATAGTCTTC
* * ** * * * ** *
3437338 TCATAAAGACGCACCATATTGATGCTTTGGTTTCACAAGAATGGCTTTTTTCGAACCAGTTTTCT
65 TCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTT-T
* *
3437403 -TAAAGTCTAAGTTTGTGCCTCAAATGAGACGAACATGGATTCTAGTAATGATCTTCATTCATTT
129 GTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTT
* * * * * *
3437467 TGTGATCAGGCCCAATAAACACATTCTCTTTATTAGGATAAATGACT-TTTATGA-TTTCATTTT
194 TGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGA-TATTGATGATTTTC-TTTT
* * *
3437530 GCATGGAAATCTTTT-TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTCTTGAATAAGACAA
257 GCATGGAAATCTTTTATTTGCCCTATTTTCCTTTAAATCAAAGTTCATAC-CTTAAATAAGACAA
* * * * * * *
3437594 GCATCGATTCCCATAATAATCTCCATTCTTTTCATGATTGGGAA-CTAAAAACAAATTCCCTTCA
321 GCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGC-CAAAACACATTCCCTTCA
* * *
3437658 TTAGGATACATGATATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATA
385 TTAAGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATA
* **
3437723 GAATCATAGTTTGTCTCCCAAATATGA
450 GAATCAAAGTTTGTCTCTTAAATATGA
* * * * *
3437750 CAAACATGAATACTCATACCAATCCCTATTCTTTTCAGGATTAAGCACCATAAAAATGGTCTTCT
1 CAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCT
* * * * *
3437815 CATAAGGATGCATCATATTGATACTTTGGTTTCGCAAGAATGGCTTTTTTCCC-CTCAGTTTTCT
66 CATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAC-CAATTTT-T
* *
3437879 -TAAAGTCTAAGTT--TAGCCTTAAATGAGACGAACATGGATTCTAGTAATGATCTTCATTCATT
129 GTAAAGTCTAAGTTCGT-GCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATT
* * * * * *
3437941 TTGGGATTAGGCACTATAAACACATTCCCCTCATTAAGATTAATGATAATGATGATTCTCTTTTG
193 TTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTG
* * *
3438006 CATGGAAATCTTTTATTTGCCCTATTTTCTTTTAAATCAAAGTTCATATCTTAAATAAGGCAAGC
258 CATGGAAATCTTTTATTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGC
* *
3438071 ATCGATTCTCGTAATAGTCTCTATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCCTT-ATT
323 ATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATT-CCCTTCATT
**
3438135 CGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGA
387 AAGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGA
*
3438200 ATCATAA-TTTGTCTCTTAAAAATGA
452 ATCA-AAGTTTGTCTCTTAAATATGA
* * * * * *
3438225 CAAACTTGAATACTCATACTAATCCCGGA-TCTTTTCAGGACTAGGCAGCATAAAAATGGTCTTC
1 CAAACATGAATACTCATACTAATCCC-CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTC
* * * * * * * ** *
3438289 TCATAAGGATGCGTCATATTGATGCTTTGGTTTTGCAAGAATGCCTTTTCTCGAACCAGTTTTCT
65 TCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTT-T
* * * * * *
3438354 -TGAAGTCTAAGTTCGTGTCTCAAATAAGACGAACGTGGATTCTACTAATGATCTTCATTCATTT
129 GTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTT
* * *
3438418 TGTGATTCGGCACTAAAAACACATTCTCCTCATTAGGATAAATGATAATGATGATTTTCTTTTGC
194 TGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGC
* * *
3438483 ATGGAAATCTTTT-TTAGCCCTATTTT-CTTTAAAATCTAAGTTCAT-CGCTTAAAAAAGACAAG
259 ATGGAAATCTTTTATTTGCCCTATTTTCCTTT-AAATCAAAGTTCATAC-CTTAAATAAGACAAG
* * * * * ** *
3438545 CATTGATTCTC-CAACAGTCTCCATTCCTTACATGATTACGAA-CCAAAATACACATTCCCTTCG
322 CATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCC-AAA-ACACATTCCCTTCA
* * **
3438608 TT-AG-TACGCATGACATTGAAGCTTTGGTGTCACAAGAAAAGCTTTT-TACCCACCATTTTTGA
385 TTAAGATA--CATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGA
* * **
3438670 TAAAATCAAAGTTTGTCTCTCAAATAAAA
448 TAGAATCAAAGTTTGTCTCTTAAATATGA
* * * * *
3438699 CAAACAAGAATGCTCCA-ACTAAACCCCATTCTTTTTAGGATTAGGTACCATAAACATAGTCTTC
1 CAAACATGAATACT-CATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTC
* * * * * * *
3438763 ACATTAGGATACA-CGATATT-CTTCTTTGGTTTCGCCAGAAAGGCATTTTTCCCACTAATATTT
65 TCATTAGGATACATC-ATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTT
* ** * *
3438826 GTGAAGTCTAAGTTCACGCCTCGAAA--AGACAAACCTAGATTCTAGTAATGATCTTCATTCATT
129 GTAAAGTCTAAGTTCGTGCCTC-AAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATT
* * *
3438889 TTGTGATTAGGCACTATAAACACATTTTTCTCATTAGGATAAATGATATTAATGATTTTCTTTTG
193 TTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTG
* *
3438954 CATGAAAATCTTTTATTTGCCCTATTTT-CTAGTTAAATCAAAGTACATACCTTAAATAAGACAA
258 CATGGAAATCTTTTATTTGCCCTATTTTCCT--TTAAATCAAAGTTCATACCTTAAATAAGACAA
* * * * * * **
3439018 GGATCAATTCTCATAACAATCTCTATTCTTTTCAAGATTGGAAAGCCAAAACACATTCCCTTTGT
321 GCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCAT
* * * * *
3439083 TAGGATACATGACATTGATGCTCTGAG-GTCACAAGAAAAGCTTTTCTTTCTACTATTTTTGATA
386 TAAGATACATGACATTGATGCTTTG-GTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATA
** * *
3439147 GAATCGTAGTTTATCTCCTAAATATGA
450 GAATCAAAGTTTGTCTCTTAAATATGA
* * * * **
3439174 CAAACATAAATACTCATACTAATCCCTATTATTTTCAGGATTAGGCACCATAAAAAGGGTCTTCT
1 CAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCT
* * * * *
3439239 CATAAGGATAAATCATATTGATGCTTTGG-TTCGTAAGAATGGCTTTTTTCCCACCAGTTTTCT-
66 CATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTT-TG
* * * * * *
3439302 TAAAGTCTAAGTTCAG-GCTTTAAATCAGACAAACATAGATTTTAGTAATGATTTTCATTCATTT
130 TAAAGTCTAAGTTC-GTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTT
* * * * * *
3439366 TGTGATTAGGCACTATAAACACATTCTCATTATTAGGACAAATGATTTTGAAGATTTTCATTTGC
194 TGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGC
* * * * *
3439431 CTGGAAATCTTTTCTTTGCCCT-TATTTCCTTAAAATCTAAGTTCAT-CTCTTAAATAAGATAAG
259 ATGGAAATCTTTTATTTGCCCTAT-TTTCCTTTAAATCAAAGTTCATAC-CTTAAATAAGACAAG
* * * * * * *
3439494 CATCGATTCTCGTAATATTTTCCATTCTTTTTCAGGATTAGGAA-CCAAAAAACATATTCCCTGC
322 CATCGATTCTCGTAACAGTCTCCATTC-TTTTCAAGATTGGGAAGCC--AAAACACATTCCCTTC
* * **
3439558 ATT-AG-TACGCATGACATTGATGCTTTGGTGTCGCGAGAGAAGC-TTTCTTTCCACTGTTTTTG
384 ATTAAGATA--CATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
* **
3439620 ATAAAATCAAAGTTTGTCTCTTAAATAAAA
447 ATAGAATCAAAGTTTGTCTCTTAAATATGA
* * * * *
3439650 CAAATAAGAATACTCCA-ACTAAACCCCATTCTTTTTAGGATTAGGTACCATAAACATAGTCTTC
1 CAAACATGAATACT-CATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTC
* * * * * * * *
3439714 ACATTAAGATACATGATATTGTTGTTTTGATTTCGCAAGAAAGG-TATTTTTCCCACTAATATTT
65 TCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCT-TTTTTCCCACCAATTTTT
* * * * * *
3439778 GTGAAGTCTAAGTTCGTGCCTCGAAA--AGACAACCCTAGATTCTGGTAATGATCCTCATTCA-T
129 GTAAAGTCTAAGTTCGTGCCTC-AAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATT
**
3439840 TTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGGCAAATGATATTGATGATTTTCTTTTG
193 TTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTG
* * ** *
3439905 CATGAAAATCGTTTATTTGCCCT-TTTTTTTGTTAAATCAAAGTTCATACCTTAAATAAGACCAG
258 CATGGAAATCTTTTATTTGCCCTATTTTCCT-TTAAATCAAAGTTCATACCTTAAATAAGACAAG
* * * **
3439969 GATCGATTCTCGTAACAATCTCCATTTTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTTGTT
322 CATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATT
* ** * *
3440034 AGGATACATGACATTGATGCTTTGGTGTTACAAGAAAAGCTTTTCTTTTCACTATTTTTGATAGA
387 AAGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGA
* * * * *
3440099 ATCATAGTTTATCTCCTAAATACGG
452 ATCAAAGTTTGTCTCTTAAATATGA
* * * **
3440124 CAAACATAAATACTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAAAAGGGTCTTCT
1 CAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCT
* * * *
3440189 C--------ACATCATATTGATGATTTGGTTTCACAAGAATGGCTTTTTTCCCACCAGTTTTCT-
66 CATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTT-TG
* * ** *
3440245 TAAAGTCTAAGCTCAG-GCCTTAAATGAGATGAACATTGATTCTAGTAATGATCTTCATTCATTT
130 TAAAGTCTAAGTTC-GTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTT
* * *
3440309 TGCGATTAGGCACTATAAACACATTC-CTCTCATTAGGATAAATGATAAT-ATTGATTTTCTTCT
194 TGTGATTAGGCACTATAAACACATTCTC-CTCATTAGGATAAATGATATTGA-TGATTTTCTTTT
* * *
3440372 GCATGTAAATCTTTTATTTGCCCTATTTTCCTTTAAATTAAAGTTCATACCTTAATTAAGACAAG
257 GCATGGAAATCTTTTATTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAG
* * * * *
3440437 CATCGACTCTCGTAACAGT-TCTATTCTTTTCAAGATTGGGATGCCATAACACATTCCCCTCATT
322 CATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATT
* * *
3440501 AGGATACATGACATTGATGCTTTGGTGT--CAAGAAAAGCTTTTCTTTCCACCGTTTCTGATAGA
387 AAGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGA
* * * * *
3440564 ATCATAGTTTGACACTAAAATATGG
452 ATCAAAGTTTGTCTCTTAAATATGA
* * ** * * *
3440589 CAAACATGAATACTCATTCTAAACCCTTTTCATTTCAGGATTAGGCACCATAAAAATGGTCTTCT
1 CAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCT
* * * *
3440654 CATAAGGATACATCATATTGATGCTTTAGTTTCGCAAGAATGGCTTTTTTCCCACCAGCTTTTT-
66 CATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCA-ATTTTTG
* * *
3440718 TAAAGTTTAAGTTCGTGCCTCAAATGAGACGAACATGCATTCTAGTAATGATCTTCATTCATTTT
130 TAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTT
* * *
3440783 GTGATTAGGCACTATAAACACATTC-CCTTCATTAGGATAATTGATAATAATGATTTTCTTTTGC
195 GTGATTAGGCACTATAAACACATTCTCC-TCATTAGGATAAATGATATTGATGATTTTCTTTTGC
* * * *
3440847 ATGGAAATCTTTTATTTGCACTACTTTCCTTTAAATTAAAGTTCATACCTTAATTAAGACAAGCA
259 ATGGAAATCTTTTATTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCA
* * * * *
3440912 TCGATCCTCGTAACAGT-TCTATTCTTTTCAAGATTGGGATGCCAAAACACATTCCCCTCATTAG
324 TCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAA
* *
3440976 GATACATGACATTGATGCTTTGGTGT--CAAGAAAAGCTTTTCTTTCCACCGTTTCTGATAGAAT
389 GATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT
* *
3441039 CATAA-TTTGACTCTTAAATATGG
454 CA-AAGTTTGTCTCTTAAATATGA
** * * *
3441062 CAAACATGAATACTCATACTAATCCCTTTTCTTTTTAGGATTAGGCACCATAAAAATGGTCTTCT
1 CAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCT
* * * * * * * * * *
3441127 CATAAAGATACATAATATTGAAGCCTTAGTTTCGCAAGAATGGCCTATTTCCCACCAGTTTTCT-
66 CATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTT-TG
* * * *
3441191 TAAAGTCTAAGTTCATGCCTCAAATGAGACGAGCATGGATTCTAGTAATGATCTTCAATCATTTT
130 TAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTT
* ***
3441256 GTGATTAGGCACTAT--A-A-A------TGATT----T---TG--ATT-AT--TTTT-TTTAAAA
195 GTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCA
* * * * * * *
3441298 TGAAAATCTTTTTTTTGCCCTATTTTCCTTAAAATCTATGTTCGT-CCATTAAAAAAGACAAGCA
260 TGGAAATCTTTTATTTGCCCTATTTTCCTTTAAATCAAAGTTCATACC-TTAAATAAGACAAGCA
* *
3441362 TCGATTCTCGTAACTGT-TCTATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCCTT-ATTA
324 TCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATT-CCCTTCATTA
* *
3441425 GGATACATGACATTGATGCTTTAGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAA
388 AGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAA
*
3441490 TCAAAGTTTGTCTCTTAAAT-TCAA
453 TCAAAGTTTGTCTCTTAAATAT-GA
* * * * * * * * *
3441514 AAAACAAGAATACTCATACTAATCCTCTTTCTTTTCAGGATTAGGCAACATAAAGATTGTTTTCA
1 CAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCT
** * * *
3441579 CATTAGGATACA-CATTATTCTTGTTTTGGTTTCGCAAGAAAGGCATTTTTCCGACCAATTTTTG
66 CATTAGGATACATCA-TATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTG
* * * * *
3441643 TGAAGTATAAGCTCGTGCCTCAAATGAAACAAAAATGGATTCTAGTAATGATCTTCATTCATTTT
130 TAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTT
* * * * * * * *
3441708 GTGATAAGGCACTGTAAGCGCATTCTCCTTATTAGGATAAATGATTTTGATGATTTTTTTTTGCT
195 GTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCA
* * ** * *
3441773 TGGAAATCTTTTCTTTGCCCTATTTTCC-TTAAGATCTAAGTTCATGTCTTAAATAAGGCAAGTA
260 TGGAAATCTTTTATTTGCCCTATTTTCCTTTAA-ATCAAAGTTCATACCTTAAATAAGACAAGCA
* * * * * * *
3441837 TCAATTCTCGCAACAGTTTCCGTTATTTTCATGATTAGGAA-CCAAAAAACACATTCCCTTCATT
324 TCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCC--AAAACACATTCCCTTCATT
* * * *
3441901 -AG-TACGCATGACATTGAAGCTTTGGTGTCGCTAGAAAAGC-TTTCTTTCCATCGTTTTTGATA
387 AAGATA--CATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATA
* * **
3441963 AAATCAAAATTTGTCTCTTAAATAAAA
450 GAATCAAAGTTTGTCTCTTAAATATGA
* * * * *
3441990 CAAATAAGAATACTCCA-ACTAAACCCCATTCTTTT-ATGGATTGGGCACTATAAACATAGTCTT
1 CAAACATGAATACT-CATACTAATCCCCATTCTTTTCA-GGATTAGGCACCATAAACATAGTCTT
* * * * * *
3442053 CACATTAGGATACATGATATTGTTGTTTTGGTTTTGCAAGAAAGGCATTTTTCCCACCAATTTTT
64 CTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTT
** * * *
3442118 GCGAAGTCTAAGTTCGTGCCTCAAATGAGACAAACCTAGATTCTAGTAATGATCTGCATTCATTT
129 GTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTT
* *
3442183 TGTGATTAGGCACTATAAACACATTCTCCTCGTTAGGATAAATGATATTGATGATTATCTTTTGC
194 TGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGC
* * *
3442248 ATAGAAATCTTTTATTTGCCCTATTTTCCTTTAAATCAAAGTTTATACCTTAAATAGGACAAGCA
259 ATGGAAATCTTTTATTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCA
* * *
3442313 TCGACTCTCATAACAGTCTCCATTCTTTT-AATGGTTGGGAA-CCAAAAACACATTCCCTTCATT
324 TCGATTCTCGTAACAGTCTCCATTCTTTTCAA-GATTGGGAAGCC-AAAACACATTCCCTTCATT
* *
3442376 -AG-TACGGATGACATTGATGCTTTGGTG-CTACAAGAAAAGCTCTTCTTTCCACCATTTTTG-T
387 AAGATAC--ATGACATTGATGCTTTGGTGTC-GCAAGAAAAGCTTTTCTTTCCACCATTTTTGAT
* * * *
3442437 TGTAATAAAAGTTTGCCT-TATAAATAAGA
449 AG-AATCAAAGTTTGTCTCT-TAAATATGA
* * * * * *
3442466 CAAATAAGAATA--CATGCTAATCCCTATTCTTTTCAGGATTAGGCACCCTAAACATGGTCTTCT
1 CAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCT
* * * * *
3442529 CATAAGCATACATCATATTGATGCTTTGGTTTTGCAAGAATGGCTTTTTTCCCTCCAATTTTCT-
66 CATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTT-TG
* * * * * *
3442593 TAAAG-CTTAA-TCCGTGCCTCAAATAAGACGAACATAGATT-TCAGGAATGATCTTTATTCATT
130 TAAAGTC-TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCT-AGTAATGATCTTCATTCATT
* *
3442655 TTGTGATTAGGCATTATAAACACATTC-CTCTCATTAGGATAAATGATAATGATGATTTT-TTTT
193 TTGTGATTAGGCACTATAAACACATTCTC-CTCATTAGGATAAATGATATTGATGATTTTCTTTT
* * *
3442718 -CATGGAAATCATATATTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTGAATAAGACAAG
257 GCATGGAAATCTTTTATTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAG
* ** * * *
3442782 CATCAATTCTCACAACAGTGTCCATTCTTTTCATGGTTGGGAA-CCAAAAAACACATTCCCTTCA
322 CATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCC--AAAACACATTCCCTTCA
* * **
3442846 TT-AG-TACGGATGACAATGATGCTTTGGTGTCGCAAGAAAAGCTCTTCTTTCCACTGTTTTTGA
385 TTAAGATAC--ATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGA
* * * *
3442909 TAGAGTCAAAGTTTATCCCTTAAATAAGA
448 TAGAATCAAAGTTTGTCTCTTAAATATGA
* *
3442938 CAAACAAGAATACTCCA-ACTAATCCCCATTCTTTTCAGGATTAGGCACCATTAACATAGTCTTC
1 CAAACATGAATACT-CATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTC
* * * * * * * * * *
3443002 ACATTAGGATACATGATATTGTTGTTTTGGTTTTGTAAGAAAGGCATTTTTCCCACTAGCTTTCT
65 TCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCA-ATTTTT
* * * * **
3443067 -TAAAGTCTAAGTTTGTTCCCCAATTGAGATGAACATGGATTCTAGTAATGA---TCATTCATTT
129 GTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTT
* *
3443128 TGTGATTAGGCACTATAAACACATTCTCCTCGTTAGGATAAATGATATTGATGATTTTCTTCTGC
194 TGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGC
* * * *
3443193 ATGAAAATCTTTAATTTGCCCTATTTTTCTTTAAATCAAAGTTCATACTTTAAATAAGACAATG-
259 ATGGAAATCTTTTATTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAA-GC
* ** * * * * * *
3443257 ATCAATTCTCACAACAATTTCTATTTTTTTCATGATTGGGAA-CCAAAAAACATATTCCCTTCAT
323 ATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCC--AAAACACATTCCCTTCAT
* * * * * *
3443321 T-AG-TACGCATGACATTGGTGCTTCGGTGTTGCAAGAAAAGCTTTTCTTTCTACTATTTTTCAT
386 TAAGATA--CATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGAT
* * * *
3443384 AGAGTCAAAGTTTGTCCCTTAAAAAAAGA
449 AGAATCAAAGTTTGTCTCTT-AAATATGA
* * * *
3443413 CAAACAAGAATACTCCA-GCTAATCCCCATTCTTTTTAGGATTAGGCACCATAAAGATAGTCTTC
1 CAAACATGAATACT-CATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTC
* * * * * *
3443477 ACATTAGGATACA-CGATATTGTTGTTTTGGTTTCGCAAGGAAA-GCATTTCTGCCACCAATTTT
65 TCATTAGGATACATC-ATATTGATGCTTTGGTTTCGCAA-GAAAGGCTTTTTTCCCACCAATTTT
* * *
3443540 TGTAGAGTCTTAGTTCGTGCCTCAAACGAGACAAA-ACTGGATTCTAGTAATGATCCTT-ATTCA
128 TGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACA-TGGATTCTAGTAATGAT-CTTCATTCA
* * * *
3443603 TTTTGTGATTAGGAACCATAAACAGATTCTCCTCATTAGGATAATTGATATTGATGATTTTCTTT
191 TTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTT
** * * * *
3443668 TGCATTAAAATCTTTTATTTGCCCT-TTTTTCTGTTAAATCAAAGTTCATATCTTAATTAAGATA
256 TGCATGGAAATCTTTTATTTGCCCTATTTTCCT-TTAAATCAAAGTTCATACCTTAAATAAGACA
* * * *
3443732 AGCATCGATTCTCGTAACAGTCTCTATTCTTTTCAAGATTGGGAAGGCAAAATACATTCCCCTCA
320 AGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCA
* * * *
3443797 TTAAGATACATGACCTTGATGCTTGGGTGTCGCAAGCAAAGCTTTTCTTTCCACCATTTTTTATA
385 TTAAGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATA
* * *
3443862 GAATCATAGTTTGTCTCCTAAATACGA
450 GAATCAAAGTTTGTCTCTTAAATATGA
* * * * * * *
3443889 AAAACATGAATACTCACACTTATCCCTATTCATTTT-AGGATTAAGCACCATAAAAATGGTCTTC
1 CAAACATGAATACTCATACTAATCCCCATTC-TTTTCAGGATTAGGCACCATAAACATAGTCTTC
* * * * * * *
3443953 TCATAAGGATACATTATATTGATGCTTTGGTTTCACAAGAATGG-ATTTTTCCCACTAGTTTTCT
65 TCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTT-T
* * * * ** * * * *
3444017 -TGAAGTCTAAGATCATACCTCAAATGAGATGAACTTGGATTGTAGAAATGATCTTCATTCTTTT
129 GTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTT
* * * * * * *
3444081 TGGGATTAGGCACTATAAACGCATTCCCCCCATTAGGATAAAGGATACTGATGTTTTTCTTTTGC
194 TGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGC
** * * *
3444146 ATGGAAATCTTTTATTTGCCCTATTTTCCCATAAATCAAAGTTTATACCTTAAATAAGACTAGCT
259 ATGGAAATCTTTTATTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCA
* *
3444211 TCGATTCTCGTAACTA-T-TCTATTCTTTTCAAGATTGGGAAGCC-AAACACATTCCCCTCATTA
324 TCGATTCTCGTAAC-AGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTA
* * * * *
3444273 AGATACATGACATTGACGCTTCGGTGTCGCAAGAAAAGCTTTTCTTTCCTCCGTTTTTGTTAGAA
388 AGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAA
* *
3444338 TCAAAGTTTGTCTCTTTAAT-TCAA
453 TCAAAGTTTGTCTCTTAAATAT-GA
* * * * *
3444362 CAAACAAGAATACTTCA-ACTAAACCCCATTTTTTTCGGGATTAGGCACCATAAACATAGTGTTC
1 CAAACATGAATAC-TCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTC
* * * * * * * *
3444426 ACATTAGGATAC-TAGATATTGTTGTTTTGGTTTCGGAAGAAAGGCATTTTTCCCGCCAATATTT
65 TCATTAGGATACAT-CATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTT
* * * * * * *
3444490 GTGAAGTCCAAGTTCGTTCCTTGAAA--AGACAAACCTGGATTCTAGTAATGAGCTTCGTTCATT
129 GTAAAGTCTAAGTTCGTGCC-TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATT
* * * *
3444553 TTGTGATTAGGCACAAT-AACACATTATCCTCATTCGGATAAATGATATTGATGATTTTCTTTTA
193 TTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTG
** *
3444617 CATAAAAATCTTTTATTTGCCCTATTTTCCATTAAATCAAAGTTCATACCTTAAATAAGACAAGC
258 CATGGAAATCTTTTATTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGC
* * * * * *
3444682 ATCAATTCTCGTAACAATCTCTATTCTTATCAAGATTGGAAAGCCAAAACACATTCCCCTT-GTT
323 ATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATT-CCCTTCATT
* * ** * * * **
3444746 AAGGTACATTACATTGATGCTTTGAAGTTGCAAGAAAAGCCTTTCTTTTCACTGTTTTTGATAGA
387 AAGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGA
* * * * *
3444811 ATGATAGTTTATCTCCTAAATACGA
452 ATCAAAGTTTGTCTCTTAAATATGA
* * ** * * **
3444836 CAAACATAAACTACTCACACTAATCCCTGTTCTTTTTAGGATTAGGCACCATAAAAAGGGTCTTC
1 CAAACATGAA-TACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTC
* * * *
3444901 TCATAAGGATACATCATATCGATGCTTTGGTTTCGCAAGAATGGCTTTTTTCCCACCAGTTTTCT
65 TCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTT-T
* * ** *
3444966 -TAAGGTCTAAGTTCAG-GCCT-TAATGAGATGAACATGGATTCTAGTAATGACCTTCATTCATT
129 GTAAAGTCTAAGTTC-GTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATT
* * * *
3445028 TTTTGATTAGGCACTATAAACACA-TCCCCTCAATAGCATAAATGATGA-T-ATTGATTTTCTTT
193 TTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGAT-ATTGA-TGATTTTCTTT
* * *
3445090 TGCGTGGAAATCTTTTATTTACCCTATTTTCCTTTAAATCAAAGTTCATACCTTAATTAAGACAA
256 TGCATGGAAATCTTTTATTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAA
* ** * *
3445155 ACATAAATTCTCGTAACAGT-TCTATTCTTTTCAAGATTGGGATGCCAAAACACATTTCCC-TCA
321 GCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACA-TTCCCTTCA
* * * *
3445218 TTAGGATACATGACATTGATGTTTTGGTGT--CAAGAAAAGCTTTTCTTTCTACCGTTTTTGATA
385 TTAAGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATA
* ** **
3445281 GAATCATAGTTTAACTCTTAAATACAA
450 GAATCAAAGTTTGTCTCTTAAATATGA
** * *
3445308 CAAACATGAATACTCATACTAATCCCTTTTCTTTTCAGGATTAGGCACCATAAAAATGGTCTTCT
1 CAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCT
* * * * ** ** * *
3445373 AATAAGGATACATCTTATTGATGCCTTGGTTTAACAAGATTGGCTTATTTCCCACCAGTTTTCT-
66 CATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTT-TG
* * * *
3445437 TAAAGTCTAAGTCCGTGCCTCAAAAGAGACGAACATGGATTCTAGTAATGATCTCCATTCATTTT
130 TAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTT
* * *
3445502 GTGATTAGGCACTATAAACACATTCTCCTTATTAGGATAAATGATTTTGATCATTTTCTTTTGCA
195 GTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCA
* * * *
3445567 TGGAAATCTTTTATTTGCCCTATTTTCCTTAAAATCTATGTTCATCCCTTAAATAAGACAAGCAT
260 TGGAAATCTTTTATTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCAT
* ** * * ** *
3445632 TGATTCTCACAACAATCTCTATTCTTTTCATTATT-GGAA-CCAAAAAACATATTCCCTTCATT-
325 CGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCC--AAAACACATTCCCTTCATTA
*** * *
3445694 AG-TACGCATGACATTGATGCTTTGGAT-TTAAAAGAAAAGCTTTTCTTTCCACCGTTTTTTTAT
388 AGATA--CATGACATTGATGCTTTGG-TGTCGCAAGAAAAGCTTTTCTTTCCACC-ATTTTTGAT
* * * *
3445757 AAAATCAAAGTTTGTCCCTAAAATAAGA
449 AGAATCAAAGTTTGTCTCTTAAATATGA
* * *
3445785 CAAACAAGAATACTCCA-ACTAGTCCCCATTCTTTTTA-GATTAGGCACCATAAACATAGTCTTC
1 CAAACATGAATACT-CATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTC
* * * * *
3445848 ACATTAGGATACA-CGATATTGTTGTTTTGGTTTCGCAAGAAAGGC-ATTTTCCCACCAGTTTTC
65 TCATTAGGATACATC-ATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTT-
* * * * * * *
3445911 T-TAAAGTCTAAGTTCGTTCTTCAATTTAGACGAACATGGATTTTGGTAATGATCTTCATTCATT
128 TGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATT
* * *
3445975 TTGTGATTAGGCACTATAAATACATTCTCCTCATTAGGATAAATGGTATTGATAATTTTCTTTTG
193 TTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTG
* * * *
3446040 CATGAAAATCTTTAAATTGCTCTA-TTTCGCTTTAAATCAAAGTTCATACCTTAAATAAGACAAG
258 CATGGAAATCTTTTATTTGCCCTATTTTC-CTTTAAATCAAAGTTCATACCTTAAATAAGACAAG
* * * * * * * *
3446104 GATCGATTCTCGCAATAGTCTCTATTTTTTTCATGATTGGGAA-CCAAAAAATACATTCCCTTTA
322 CATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCC--AAAACACATTCCCTTCA
* ** * * *
3446168 TT-AG-TACGCATGACATTGGTGCTTCAGTGTTGCAAGAACAGCTTTTCTTTCCACCATTTTTTA
385 TTAAGATA--CATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGA
* * *
3446231 TAGAATCACAGTTTGTCCCTTAAATAAGA
448 TAGAATCAAAGTTTGTCTCTTAAATATGA
* * * *
3446260 TAAACAAGAATACTCCA-ACTAATCCCCATTCTTTTTAGGATTAGGCACTA-AAATCATAGTCTT
1 CAAACATGAATACT-CATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAA-CATAGTCTT
* * * * * *
3446323 CACATTAGGA-ATCA-CGATATTGTTGTTTTGGTTTCGCAAGGAAA-GCATTTCTGCCACCAATT
64 CTCATTAGGATA-CATC-ATATTGATGCTTTGGTTTCGCAA-GAAAGGCTTTTTTCCCACCAATT
* * * * *
3446385 TTTGTGAAGTCTTAGTTCGTGCCTCAAACGAAACAAATATGGATTCTAGTAATGATCTTCATTCA
126 TTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCA
* * * * *
3446450 TTTCGTGATTACGAACCATAAACACATTCTCCTCATTAGGATAATTGATATTGATGATTTTCTTT
191 TTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTT
** * * *
3446515 TGCATTAAAATCTTTTATTTGCCCTCTCTT-CTGTTAAATCAAAGTTCATATCTTAAATAAGACA
256 TGCATGGAAATCTTTTATTTGCCCTATTTTCCT-TTAAATCAAAGTTCATACCTTAAATAAGACA
* * * *
3446579 AGCATCGATTCTCATAACAGTCTCTATTCTTTTCAAGATTGGGAAGCCAAAACCCCTTTCCCTT-
320 AGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAA-CACATTCCCTTC
* ** * *
3446643 ATTAAGATACATGACCTTGATGCTCGGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTCTGAT
384 ATTAAGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGAT
* * *
3446708 AGAATCATAGTTTGACTCTTAAATATGG
449 AGAATCAAAGTTTGTCTCTTAAATATGA
** * *
3446736 CAAACATGAATACTCATACTAATCCCTTTTCCTTTT-AGGATTAGGCACCATAAAAATGGTCTTC
1 CAAACATGAATACTCATACTAATCCCCATT-CTTTTCAGGATTAGGCACCATAAACATAGTCTTC
* * * * *
3446800 TCATAAGGATACATCATATTGATGCTTTGGTTTTGCAAGAATGGATTTTTTCCCACCAGTTTTCT
65 TCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTT-T
* * ** * * *
3446865 -TGAAGTCTAAGTTCATGCCTCAAATGAGATGAACTTCGATTCTAGTAATAATCTTCATTCATTT
129 GTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTT
* * ** * * *
3446929 TGGGATTAGGCGCTATAAATGCATTCCCCTCATTAGGATAAATTATAATGATGATTTTCTTTTGC
194 TGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGC
* ** **
3446994 ATGGAAATCTTTTATTTGTCCTATTTTCCCATAAATCAAAGTTCATACCTTAAATAAGACAAGTT
259 ATGGAAATCTTTTATTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCA
* * * *
3447059 TCGATTCTCATAACTA-T-TCTATTCTTTTCAAGATTGGGAAGCCAAAAAATATTCCCTTCATTA
324 TCGATTCTCGTAAC-AGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTA
* * **
3447122 GGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCTTCATTTTTGATAGAA
388 AGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAA
3447187 TCAAAGTTTGTCTCTTAAAT-TCGA
453 TCAAAGTTTGTCTCTTAAATAT-GA
* * *
3447211 CAAACATGAATACTCATACTAATCCTCATTCTTTTCAGGATTAGGCACCATAAACATTGTCTTCA
1 CAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCT
* * * * * * *
3447276 CATTAGGATACA-CATTATTGTTGTTTTAGTTTCGTAAGGATGGCATTTTTT-CCACCATTTTTT
66 CATTAGGATACATCA-TATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTTTTCCCACCAATTTTT
* *
3447339 GTAAATTATAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTT
129 GTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTT
* *
3447404 TGTGATTAGGCACTATAAACACATTCTCCTTATTAGGATAAATGATTTTGATGATTTTCTTTTGC
194 TGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGC
* * * * * *
3447469 CTAGAAATCTTTTCTTTGCCCTATTTTCCATAAAATCTAAGTTCAT-CTCTTAAATAAGACAAGC
259 ATGGAAATCTTTTATTTGCCCTATTTTCCTTTAAATCAAAGTTCATAC-CTTAAATAAGACAAGC
* * * *
3447533 ATCGATTCTCGCAACAGTTTCCATTCTTTTCATGATTAGGAA-CCAAAAACACATTCCCTTCATT
323 ATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCC-AAAACACATTCCCTTCATT
* * *
3447597 -AGTACACATGACATTGAGGCTTTGGTGTCGCAAGAAAAGC-TTTCTTTCCACCATTTTTGATAA
387 AAG-ATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAG
**
3447660 AATCAAAGTTTGTCTCTTAAATAAAA
451 AATCAAAGTTTGTCTCTTAAATATGA
* * * * * *
3447686 CAAACAAGAATACTTCA-ACTAAACCCCATTCTTTTCAGGATTAGGCACCAAAAACACATTC-CC
1 CAAACATGAATAC-TCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTC
* * * * * * *
3447749 TTCATTAGTACACATGACATTGAGGCTTTGGTGTCGCAAGAAAAGCTTTCTTT-CCACC-ATTTT
65 -TCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTT-TTTCCCACCAATTTT
* *
3447812 TGATAAAATCAAAGTT
128 TG-TAAAGTCTAAGTT
3447828 TGTCTCTTAA
Statistics
Matches: 17194, Mismatches: 2694, Indels: 1095
0.82 0.13 0.05
Matches are distributed among these distances:
448 97 0.01
449 116 0.01
450 142 0.01
451 158 0.01
452 442 0.03
453 136 0.01
454 322 0.02
455 95 0.01
456 8 0.00
457 181 0.01
458 151 0.01
459 7 0.00
460 4 0.00
461 35 0.00
462 25 0.00
463 222 0.01
464 154 0.01
465 122 0.01
466 66 0.00
467 104 0.01
468 217 0.01
469 19 0.00
470 65 0.00
471 258 0.02
472 575 0.03
473 1591 0.09
474 1738 0.10
475 4152 0.24
476 4328 0.25
477 1257 0.07
478 395 0.02
479 12 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (476 bp):
CAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCT
CATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGT
AAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTG
TGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAT
GGAAATCTTTTATTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATC
GATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAAGA
TACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCA
AAGTTTGTCTCTTAAATATGA
Found at i:3447805 original size:475 final size:474
Alignment explanation
Indices: 3441269--3447812 Score: 6756
Period size: 475 Copynumber: 13.8 Consensus size: 474
3441259 ATTAGGCACT
* * ** * * *
3441269 ATAAATGATTTTGATTATTTT-TTTTAAAATGAAAATCTTTTTTTTGCCCTATTTTCCTTAAAAT
1 ATAAATGATATTGATGATTTTCTTTT-GCATGGAAATCTTTTATTTGCCCTATTTTCCTTTAAAT
* * * * *
3441333 CTATGTTCGT-CCATTAAAAAAGACAAGCATCGATTCTCGTAACTG-TTCTATTCTTTTCAAGAT
65 CAAAGTTCATACC-TTAAATAAGACAAGCATCGATTCTCGTAACAGTTTCTATTCTTTTCAAGAT
* * *
3441396 TGGGAAGCC-AAAACACATTCCCCTT-ATTAGGATACATGACATTGATGCTTTAGTGTCGCAAGA
129 TGGGAA-CCAAAAACACATT-CCCTTCATTAGTACACATGACATTGATGCTTTGGTGTCGCAAGA
*
3441459 AAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATTCAAA-AAACAAGA
192 AAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAA-TAAAACAAACAAGA
* * * * * *
3441523 ATAC-TCATACTAATCCTCTTTCTTTTCAGGATTAGGCAACATAAAGATTGTTTTCACATTAGGA
256 ATACTTCA-ACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTT-ACATTAGGA
* * * * * *
3441587 TACA-CATTATTCTTGTTTTGGTTTCGCAAGAAAGGCATTTTTCCGACCAATTTTTGTGAAGTAT
319 TACATGA-TATTGTTGTTTTGGTTTCGCAAGAAAGGC-TTTTTCCCACCATTTTTTGTAAAGTCT
* * * * *
3441651 AAGCTCGTGCCTCAAATGAAACAAAAATGGATTCTAGTAATGATCTTCATTCATTTTGTGATAAG
382 AAGTTCGTGCCTCAAATGAGACGAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAG
* * * *
3441716 GCACTGTAAGCGCATTCTCCTTATTAGG
447 GCACTATAAACACATTCTCCTCATTAGG
* * * *
3441744 ATAAATGATTTTGATGATTTTTTTTTGCTTGGAAATCTTTTCTTTGCCCTATTTTCC-TTAAGAT
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTCCTTTAA-AT
* ** * * * * ** * *
3441808 CTAAGTTCATGTCTTAAATAAGGCAAGTATCAATTCTCGCAACAGTTTCCGTTATTTTCATGATT
65 CAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTTTCTATTCTTTTCAAGATT
* * * *
3441873 AGGAACCAAAAAACACATTCCCTTCATTAGTACGCATGACATTGAAGCTTTGGTGTCGCTAGAAA
130 GGGAACC-AAAAACACATTCCCTTCATTAGTACACATGACATTGATGCTTTGGTGTCGCAAGAAA
* * * * *
3441938 AGC-TTTCTTTCCATCGTTTTTGATAAAATCAAAATTTGTCTCTTAAATAAAACAAATAAGAATA
194 AGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAAACAAACAAGAATA
* * * *
3442002 CTCCAACTAAACCCCATTCTTTT-ATGGATTGGGCACTATAAACATAGTCTTCACATTAGGATAC
259 CTTCAACTAATCCCCATTCTTTTCA-GGATTAGGCACCATAAACATAGTCTT-ACATTAGGATAC
* * **
3442066 ATGATATTGTTGTTTTGGTTTTGCAAGAAAGGCATTTTTCCCACCAATTTTTGCGAAGTCTAAGT
322 ATGATATTGTTGTTTTGGTTTCGCAAGAAAGGC-TTTTTCCCACCATTTTTTGTAAAGTCTAAGT
* * * *
3442131 TCGTGCCTCAAATGAGACAAACCTAGATTCTAGTAATGATCTGCATTCATTTTGTGATTAGGCAC
386 TCGTGCCTCAAATGAGACGAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCAC
*
3442196 TATAAACACATTCTCCTCGTTAGG
451 TATAAACACATTCTCCTCATTAGG
* *
3442220 ATAAATGATATTGATGATTATCTTTTGCATAGAAATCTTTTATTTGCCCTATTTTCCTTTAAATC
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTCCTTTAAATC
* * * * * * *
3442285 AAAGTTTATACCTTAAATAGGACAAGCATCGACTCTCATAACAGTCTCCATTCTTTT-AATGGTT
66 AAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTTTCTATTCTTTTCAA-GATT
** *
3442349 GGGAACCAAAAACACATTCCCTTCATTAGTACGGATGACATTGATGCTTTGGTG-CTACAAGAAA
130 GGGAACCAAAAACACATTCCCTTCATTAGTACACATGACATTGATGCTTTGGTGTC-GCAAGAAA
* * * * * *
3442413 AGCTCTTCTTTCCACCATTTTTG-TTGTAATAAAAGTTTGCCT-TATAAATAAGACAAATAAGAA
194 AGCTTTTCTTTCCACCATTTTTGATAG-AATCAAAGTTTGTCTCT-TAAATAAAACAAACAAGAA
* * * * * * * *
3442476 TACAT--GCTAATCCCTATTCTTTTCAGGATTAGGCACCCTAAACATGGTCTTCTCATAAGCATA
257 TACTTCAACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTT-ACATTAGGATA
* * * * * * *
3442539 CATCATATTGATGCTTTGGTTTTGCAAGAATGGCTTTTTTCCCTCCAATTTTCT-TAAAG-CTTA
321 CATGATATTGTTGTTTTGGTTTCGCAAGAAAGGC-TTTTTCCCACC-ATTTTTTGTAAAGTC-TA
* * * * *
3442602 A-TCCGTGCCTCAAATAAGACGAACATAGATT-TCAGGAATGATCTTTATTCATTTTGTGATTAG
383 AGTTCGTGCCTCAAATGAGACGAACATGGATTCT-AGTAATGATCTTCATTCATTTTGTGATTAG
*
3442665 GCATTATAAACACATTC-CTCTCATTAGG
447 GCACTATAAACACATTCTC-CTCATTAGG
* * *
3442693 ATAAATGATAATGATGATTTT-TTTT-CATGGAAATCATATATTTGCCCTATTTTCCTTTAAATC
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTCCTTTAAATC
* * ** * * * *
3442756 AAAGTTCATACCTTGAATAAGACAAGCATCAATTCTCACAACAGTGTCCATTCTTTTCATGGTTG
66 AAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTTTCTATTCTTTTCAAGATTG
** *
3442821 GGAACCAAAAAACACATTCCCTTCATTAGTACGGATGACAATGATGCTTTGGTGTCGCAAGAAAA
131 GGAACC-AAAAACACATTCCCTTCATTAGTACACATGACATTGATGCTTTGGTGTCGCAAGAAAA
* ** * * * *
3442886 GCTCTTCTTTCCACTGTTTTTGATAGAGTCAAAGTTTATCCCTTAAATAAGACAAACAAGAATAC
195 GCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAAACAAACAAGAATAC
* *
3442951 TCCAACTAATCCCCATTCTTTTCAGGATTAGGCACCATTAACATAGTCTTCACATTAGGATACAT
260 TTCAACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTT-ACATTAGGATACAT
* * * * *
3443016 GATATTGTTGTTTTGGTTTTGTAAGAAAGGCATTTTTCCCACTAGCTTTCT-TAAAGTCTAAGTT
324 GATATTGTTGTTTTGGTTTCGCAAGAAAGGC-TTTTTCCCACCA-TTTTTTGTAAAGTCTAAGTT
* * * * *
3443080 TGTTCCCCAATTGAGATGAACATGGATTCTAGTAATGA---TCATTCATTTTGTGATTAGGCACT
387 CGTGCCTCAAATGAGACGAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACT
*
3443142 ATAAACACATTCTCCTCGTTAGG
452 ATAAACACATTCTCCTCATTAGG
* * * *
3443165 ATAAATGATATTGATGATTTTCTTCTGCATGAAAATCTTTAATTTGCCCTATTTTTCTTTAAATC
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTCCTTTAAATC
* * ** * * *
3443230 AAAGTTCATACTTTAAATAAGACAATG-ATCAATTCTCACAACAATTTCTATTTTTTTCATGATT
66 AAAGTTCATACCTTAAATAAGACAA-GCATCGATTCTCGTAACAGTTTCTATTCTTTTCAAGATT
* * * * *
3443294 GGGAACCAAAAAACATATTCCCTTCATTAGTACGCATGACATTGGTGCTTCGGTGTTGCAAGAAA
130 GGGAACC-AAAAACACATTCCCTTCATTAGTACACATGACATTGATGCTTTGGTGTCGCAAGAAA
* * * * * *
3443359 AGCTTTTCTTTCTACTATTTTTCATAGAGTCAAAGTTTGTCCCTTAAAAAAAGACAAACAAGAAT
194 AGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAA-ACAAACAAGAAT
* * * *
3443424 ACTCCAGCTAATCCCCATTCTTTTTAGGATTAGGCACCATAAAGATAGTCTTCACATTAGGATAC
258 ACTTCAACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTT-ACATTAGGATAC
* * * * * *
3443489 ACGATATTGTTGTTTTGGTTTCGCAAGGAAA-GCATTTCTGCCACCAATTTTTGTAGAGTCTTAG
322 ATGATATTGTTGTTTTGGTTTCGCAA-GAAAGGC-TTTTTCCCACCATTTTTTGTAAAGTCTAAG
* *
3443553 TTCGTGCCTCAAACGAGAC-AAAACTGGATTCTAGTAATGATCCTT-ATTCATTTTGTGATTAGG
385 TTCGTGCCTCAAATGAGACGAACA-TGGATTCTAGTAATGAT-CTTCATTCATTTTGTGATTAGG
* * *
3443616 AACCATAAACAGATTCTCCTCATTAGG
448 CACTATAAACACATTCTCCTCATTAGG
* ** *
3443643 ATAATTGATATTGATGATTTTCTTTTGCATTAAAATCTTTTATTTGCCCT-TTTTTCTGTTAAAT
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTCCT-TTAAAT
* * * *
3443707 CAAAGTTCATATCTTAATTAAGATAAGCATCGATTCTCGTAACAGTCTCTATTCTTTTCAAGATT
65 CAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTTTCTATTCTTTTCAAGATT
* * * * * * *
3443772 GGGAAGGC-AAAATACATTCCCCTCATTAAG-ATACATGACCTTGATGCTTGGGTGTCGCAAGCA
130 GGGAA-CCAAAAACACATTCCCTTCATT-AGTACACATGACATTGATGCTTTGGTGTCGCAAGAA
* * * * *
3443835 AAGCTTTTCTTTCCACCATTTTTTATAGAATCATAGTTTGTCTCCTAAATACGAA-AAACATGAA
193 AAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATA-AAACAAACAAGAA
* * * * * * *
3443899 TAC-TCACACTTATCCCTATTCATTTT-AGGATTAAGCACCATAAAAATGGTCTTCTCATAAGGA
257 TACTTCA-ACTAATCCCCATTC-TTTTCAGGATTAGGCACCATAAACATAGTCTT-ACATTAGGA
* * * * * * *
3443962 TACATTATATTGATGCTTTGGTTTCACAAGAATGGATTTTTCCCACTAGTTTTCTTG--AAGTCT
319 TACATGATATTGTTGTTTTGGTTTCGCAAGAAAGGCTTTTTCCCACCA-TTTT-TTGTAAAGTCT
* * * * * * * * *
3444025 AAGATCATACCTCAAATGAGATGAACTTGGATTGTAGAAATGATCTTCATTCTTTTTGGGATTAG
382 AAGTTCGTGCCTCAAATGAGACGAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAG
* * *
3444090 GCACTATAAACGCATTCCCCCCATTAGG
447 GCACTATAAACACATTCTCCTCATTAGG
* * * **
3444118 ATAAAGGATACTGATGTTTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTCCCATAAATC
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTCCTTTAAATC
* * *
3444183 AAAGTTTATACCTTAAATAAGACTAGCTTCGATTCTCGTAAC--TATTCTATTCTTTTCAAGATT
66 AAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGT-TTCTATTCTTTTCAAGATT
* * * *
3444246 GGGAAGCC--AAACACATTCCCCTCATTAAG-ATACATGACATTGACGCTTCGGTGTCGCAAGAA
130 GGGAA-CCAAAAACACATTCCCTTCATT-AGTACACATGACATTGATGCTTTGGTGTCGCAAGAA
* * * * **
3444308 AAGCTTTTCTTTCCTCCGTTTTTGTTAGAATCAAAGTTTGTCTCTTTAATTCAACAAACAAGAAT
193 AAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAAACAAACAAGAAT
* * * *
3444373 ACTTCAACTAAACCCCATTTTTTTCGGGATTAGGCACCATAAACATAGTGTTCACATTAGGATAC
258 ACTTCAACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTT-ACATTAGGATAC
* * * * * *
3444438 -TAGATATTGTTGTTTTGGTTTCGGAAGAAAGGCATTTTTCCCGCCAATATTTGTGAAGTCCAAG
322 AT-GATATTGTTGTTTTGGTTTCGCAAGAAAGGC-TTTTTCCCACCATTTTTTGTAAAGTCTAAG
* * * * * *
3444502 TTCGTTCCTTGAAA--AGACAAACCTGGATTCTAGTAATGAGCTTCGTTCATTTTGTGATTAGGC
385 TTCGTGCC-TCAAATGAGACGAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGC
* * *
3444565 ACAAT-AACACATTATCCTCATTCGG
449 ACTATAAACACATTCTCCTCATTAGG
* ** *
3444590 ATAAATGATATTGATGATTTTCTTTTACATAAAAATCTTTTATTTGCCCTATTTTCCATTAAATC
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTCCTTTAAATC
* * * *
3444655 AAAGTTCATACCTTAAATAAGACAAGCATCAATTCTCGTAACAATCTCTATTCTTATCAAGATTG
66 AAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTTTCTATTCTTTTCAAGATTG
* * * ** *
3444720 GAAAGCC-AAAACACATTCCCCTT-GTTAAGGT--ACATTACATTGATGCTTTGAAGTTGCAAGA
131 GGAA-CCAAAAACACATT-CCCTTCATT-A-GTACACATGACATTGATGCTTTGGTGTCGCAAGA
* * ** * * * * **
3444781 AAAGCCTTTCTTTTCACTGTTTTTGATAGAATGATAGTTTATCTCCTAAATACGACAAACATA-A
192 AAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAAACAAACA-AGA
** * * ** * *
3444845 ACTAC-TCACACTAATCCCTGTTCTTTTTAGGATTAGGCACCATAAAAAGGGTCTTCTCATAAGG
256 A-TACTTCA-ACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTT-ACATTAGG
* * * * * * *
3444909 ATACATCATATCGATGCTTTGGTTTCGCAAGAATGGCTTTTTTCCCACCAGTTTTCT-TAAGGTC
318 ATACATGATATTGTTGTTTTGGTTTCGCAAGAAAGGC-TTTTTCCCACCA-TTTTTTGTAAAGTC
* * * *
3444973 TAAGTTCAG-GCCT-TAATGAGATGAACATGGATTCTAGTAATGACCTTCATTCATTTTTTGATT
381 TAAGTTC-GTGCCTCAAATGAGACGAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATT
* * *
3445036 AGGCACTATAAACACA-TCCCCTCAATAGC
445 AGGCACTATAAACACATTCTCCTCATTAGG
* *
3445065 ATAAATGATGA-T-ATTGATTTTCTTTTGCGTGGAAATCTTTTATTTACCCTATTTTCCTTTAAA
1 ATAAATGAT-ATTGA-TGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTCCTTTAAA
* * **
3445128 TCAAAGTTCATACCTTAATTAAGACAAACATAAATTCTCGTAACAG-TTCTATTCTTTTCAAGAT
64 TCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTTTCTATTCTTTTCAAGAT
* * * *
3445192 TGGGATGCC-AAAACACATTTCCC-TCATTAGGATACATGACATTGATGTTTTGGTGT--CAAGA
129 TGGGA-ACCAAAAACACA-TTCCCTTCATTAGTACACATGACATTGATGCTTTGGTGTCGCAAGA
* * * ** * *
3445253 AAAGCTTTTCTTTCTACCGTTTTTGATAGAATCATAGTTTAACTCTTAAATACAACAAACATGAA
192 AAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAAACAAACAAGAA
** * * *
3445318 TAC-TCATACTAATCCCTTTTCTTTTCAGGATTAGGCACCATAAAAATGGTCTT-CTAATAAGGA
257 TACTTCA-ACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTAC--ATTAGGA
** * ** ** ** *
3445381 TACATCTTATTGATGCCTTGGTTTAACAAGATTGGCTTATTTCCCACCAGTTTTCT-TAAAGTCT
319 TACATGATATTGTTGTTTTGGTTTCGCAAGAAAGGCTT-TTTCCCACCA-TTTTTTGTAAAGTCT
* * *
3445445 AAGTCCGTGCCTCAAAAGAGACGAACATGGATTCTAGTAATGATCTCCATTCATTTTGTGATTAG
382 AAGTTCGTGCCTCAAATGAGACGAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAG
*
3445510 GCACTATAAACACATTCTCCTTATTAGG
447 GCACTATAAACACATTCTCCTCATTAGG
* * *
3445538 ATAAATGATTTTGATCATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTCCTTAAAATC
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTCCTTTAAATC
* * * * ** * * **
3445603 TATGTTCATCCCTTAAATAAGACAAGCATTGATTCTCACAACAATCTCTATTCTTTTCATTATT-
66 AAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTTTCTATTCTTTTCAAGATTG
* * ***
3445667 GGAACCAAAAAACATATTCCCTTCATTAGTACGCATGACATTGATGCTTTGGAT-TTAAAAGAAA
131 GGAACC-AAAAACACATTCCCTTCATTAGTACACATGACATTGATGCTTTGG-TGTCGCAAGAAA
* * * * * *
3445731 AGCTTTTCTTTCCACCGTTTTTTTATAAAATCAAAGTTTGTCCCTAAAATAAGACAAACAAGAAT
194 AGCTTTTCTTTCCACC-ATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAAACAAACAAGAAT
* * *
3445796 ACTCCAACTAGTCCCCATTCTTTTTA-GATTAGGCACCATAAACATAGTCTTCACATTAGGATAC
258 ACTTCAACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTT-ACATTAGGATAC
* * *
3445860 ACGATATTGTTGTTTTGGTTTCGCAAGAAAGGCATTTTCCCACCAGTTTTCT-TAAAGTCTAAGT
322 ATGATATTGTTGTTTTGGTTTCGCAAGAAAGGCTTTTTCCCACCA-TTTTTTGTAAAGTCTAAGT
* * * * * *
3445924 TCGTTCTTCAATTTAGACGAACATGGATTTTGGTAATGATCTTCATTCATTTTGTGATTAGGCAC
386 TCGTGCCTCAAATGAGACGAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCAC
*
3445989 TATAAATACATTCTCCTCATTAGG
451 TATAAACACATTCTCCTCATTAGG
* * * * * *
3446013 ATAAATGGTATTGATAATTTTCTTTTGCATGAAAATCTTTAAATTGCTCTA-TTTCGCTTTAAAT
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTC-CTTTAAAT
* * * * * *
3446077 CAAAGTTCATACCTTAAATAAGACAAGGATCGATTCTCGCAATAGTCTCTATTTTTTTCATGATT
65 CAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTTTCTATTCTTTTCAAGATT
* * * * ** * *
3446142 GGGAACCAAAAAATACATTCCCTTTATTAGTACGCATGACATTGGTGCTTCAGTGTTGCAAGAAC
130 GGGAACC-AAAAACACATTCCCTTCATTAGTACACATGACATTGATGCTTTGGTGTCGCAAGAAA
* * * * *
3446207 AGCTTTTCTTTCCACCATTTTTTATAGAATCACAGTTTGTCCCTTAAATAAGATAAACAAGAATA
194 AGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAAACAAACAAGAATA
* * *
3446272 CTCCAACTAATCCCCATTCTTTTTAGGATTAGGCACTA-AAATCATAGTCTTCACATTAGGA-AT
259 CTTCAACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAA-CATAGTCTT-ACATTAGGATA-
* * * * * *
3446335 CACGATATTGTTGTTTTGGTTTCGCAAGGAAA-GCATTTCTGCCACCAATTTTTGTGAAGTCTTA
321 CATGATATTGTTGTTTTGGTTTCGCAA-GAAAGGC-TTTTTCCCACCATTTTTTGTAAAGTCTAA
* * * * * * *
3446399 GTTCGTGCCTCAAACGAAACAAATATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTACGA
384 GTTCGTGCCTCAAATGAGACGAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGC
*
3446464 ACCATAAACACATTCTCCTCATTAGG
449 ACTATAAACACATTCTCCTCATTAGG
* ** * *
3446490 ATAATTGATATTGATGATTTTCTTTTGCATTAAAATCTTTTATTTGCCCTCTCTT-CTGTTAAAT
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTCCT-TTAAAT
* * *
3446554 CAAAGTTCATATCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCTATTCTTTTCAAGATT
65 CAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTTTCTATTCTTTTCAAGATT
* * * * * **
3446619 GGGAAGCCAAAACCCCTTTCCCTT-ATTAAG-ATACATGACCTTGATGCTCGGGTGTCGCAAGAA
130 GGGAA-CCAAAAACACATTCCCTTCATT-AGTACACATGACATTGATGCTTTGGTGTCGCAAGAA
* * * * *** *
3446682 AAGCTTTTCTTTCCACCGTTTCTGATAGAATCATAGTTTGACTCTTAAATATGGCAAACATGAAT
193 AAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAAACAAACAAGAAT
** * * * *
3446747 AC-TCATACTAATCCCTTTTCCTTTT-AGGATTAGGCACCATAAAAATGGTCTTCTCATAAGGAT
258 ACTTCA-ACTAATCCCCATT-CTTTTCAGGATTAGGCACCATAAACATAGTCTT-ACATTAGGAT
* * * * * *
3446810 ACATCATATTGATGCTTTGGTTTTGCAAGAATGGATTTTTTCCCACCAGTTTTCTTG--AAGTCT
320 ACATGATATTGTTGTTTTGGTTTCGCAAGAAAGG-CTTTTTCCCACCA-TTTT-TTGTAAAGTCT
* * * * * *
3446873 AAGTTCATGCCTCAAATGAGATGAACTTCGATTCTAGTAATAATCTTCATTCATTTTGGGATTAG
382 AAGTTCGTGCCTCAAATGAGACGAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAG
* ** *
3446938 GCGCTATAAATGCATTCCCCTCATTAGG
447 GCACTATAAACACATTCTCCTCATTAGG
* * * **
3446966 ATAAATTATAATGATGATTTTCTTTTGCATGGAAATCTTTTATTTGTCCTATTTTCCCATAAATC
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTCCTTTAAATC
** *
3447031 AAAGTTCATACCTTAAATAAGACAAGTTTCGATTCTCATAAC--TATTCTATTCTTTTCAAGATT
66 AAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGT-TTCTATTCTTTTCAAGATT
* * * *
3447094 GGGAAGCCAAAAA-ATATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAA
130 GGGAA-CCAAAAACACATTCCCTTCATTAGTACACATGACATTGATGCTTTGGTGTCGCAAGAAA
** *** *
3447158 AGCTTTTCTTTCCTTCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATTCGACAAACATGAATA
194 AGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAAACAAACAAGAATA
* *
3447223 C-TCATACTAATCCTCATTCTTTTCAGGATTAGGCACCATAAACATTGTCTTCACATTAGGATAC
259 CTTCA-ACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTT-ACATTAGGATAC
* * * * * * * *
3447287 A-CATTATTGTTGTTTTAGTTTCGTAAGGATGGCATTTTTTCCACCATTTTTTGTAAATTATAAG
322 ATGA-TATTGTTGTTTTGGTTTCGCAAGAAAGGC-TTTTTCCCACCATTTTTTGTAAAGTCTAAG
*
3447351 TTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCA
385 TTCGTGCCTCAAATGAGACGAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCA
*
3447416 CTATAAACACATTCTCCTTATTAGG
450 CTATAAACACATTCTCCTCATTAGG
* * * * * *
3447441 ATAAATGATTTTGATGATTTTCTTTTGCCTAGAAATCTTTTCTTTGCCCTATTTTCCATAAAATC
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTCCTTTAAATC
* * * *
3447506 TAAGTTCAT-CTCTTAAATAAGACAAGCATCGATTCTCGCAACAGTTTCCATTCTTTTCATGATT
66 AAAGTTCATAC-CTTAAATAAGACAAGCATCGATTCTCGTAACAGTTTCTATTCTTTTCAAGATT
* *
3447570 AGGAACCAAAAACACATTCCCTTCATTAGTACACATGACATTGAGGCTTTGGTGTCGCAAGAAAA
130 GGGAACCAAAAACACATTCCCTTCATTAGTACACATGACATTGATGCTTTGGTGTCGCAAGAAAA
*
3447635 GC-TTTCTTTCCACCATTTTTGATAAAATCAAAGTTTGTCTCTTAAATAAAACAAACAAGAATAC
195 GCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAAACAAACAAGAATAC
* * * * * *
3447699 TTCAACTAAACCCCATTCTTTTCAGGATTAGGCACCAAAAACACATTCCCTT-CATTAGTACACA
260 TTCAACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGT--CTTACATTAGGATACA
* ** * * * *
3447763 TGACATTGAGGCTTTGGTGTCGCAAGAAAAGCTTTCTTTCCACCATTTTT
323 TGATATTGTTGTTTTGGTTTCGCAAGAAAGGCTTT-TTCCCACCATTTTT
3447813 GATAAAATCA
Statistics
Matches: 5103, Mismatches: 818, Indels: 296
0.82 0.13 0.05
Matches are distributed among these distances:
469 1 0.00
470 3 0.00
471 215 0.04
472 417 0.08
473 462 0.09
474 678 0.13
475 1576 0.31
476 1136 0.22
477 450 0.09
478 163 0.03
479 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.37
Consensus pattern (474 bp):
ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTCCTTTAAATC
AAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTTTCTATTCTTTTCAAGATTG
GGAACCAAAAACACATTCCCTTCATTAGTACACATGACATTGATGCTTTGGTGTCGCAAGAAAAG
CTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAAACAAACAAGAATACT
TCAACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTACATTAGGATACATGA
TATTGTTGTTTTGGTTTCGCAAGAAAGGCTTTTTCCCACCATTTTTTGTAAAGTCTAAGTTCGTG
CCTCAAATGAGACGAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAA
ACACATTCTCCTCATTAGG
Found at i:3447937 original size:158 final size:158
Alignment explanation
Indices: 3447116--3448369 Score: 676
Period size: 158 Copynumber: 7.9 Consensus size: 158
3447106 AATATTCCCT
* **
3447116 TCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCTTCATTTTTG
1 TCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
* ** * *
3447181 ATAGAATCAAAGTTTGTCTCTTAAATTCGACAAACATGAATAC-TCATACTAATCCTCATTCTTT
66 ATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTCA-ACTAATCCCCATTCTTT
3447245 TCAGGATTAGGCACCAT-AA-ACATTGTCTTC
130 TCAGGATTAGGCACCATAAACACATT-TC--C
* * * * * * * * * ** *
3447275 ACATTAGGATACA-CATTATTGTTGTTTTAGTTTCGTAAGGATGGCATTT-TTTCCACCATTTTT
1 TCATTAGGATACATGA-CATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCA-TTTT
* * * * * * * * **
3447338 TG-T-AAATTATAAGTTCGTGC-CTCAAATGAGACAAACATGGATTCTAGT-AA-TGATCTTCAT
64 TGATAAAATCA-AAGTTTGT-CTCTTAAATAAGACAAACAAGAATACT--TCAACTAATCCCCAT
*
3447398 TCATTTT--GTGATTAGGCACTATAAACACATTCTCC
125 TC-TTTTCAG-GATTAGGCACCATAAACACATT-TCC
* * ** * ** * * * * *
3447433 TTATTAGGATAAATGATTTTGATGATTTTCTTTTGCCTAG-AAATCTTTTCTTTGCC-CTATTTT
1 TCATTAGGATACATGACATTGATGCTTTGGTGTCG-CAAGAAAAGCTTTTCTTT-CCACCATTTT
** * ** * * * * * **
3447496 CCATAAAATCTAAGTTCATCTCTTAAATAAGACAAGCATCG-ATTCTCGCAAC-AGTTTCCATTC
64 TGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACA-AGAATACT-TCAACTAATCCCCATTC
* * * *
3447559 TTTTCATGATTAGGAACCAAAAACACATTCCC
127 TTTTCAGGATTAGGCACCATAAACACATTTCC
* * *
3447591 TTCATTAGTACACATGACATTGAGGCTTTGGTGTCGCAAGAAAAGC-TTTCTTTCCACCATTTTT
1 -TCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
* *
3447655 GATAAAATCAAAGTTTGTCTCTTAAATAAAACAAACAAGAATACTTCAACTAAACCCCATTCTTT
65 GATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTCAACTAATCCCCATTCTTT
* *
3447720 TCAGGATTAGGCACCAAAAACACATTCCC
130 TCAGGATTAGGCACCATAAACACATTTCC
* * *
3447749 TTCATTAGTACACATGACATTGAGGCTTTGGTGTCGCAAGAAAAGC-TTTCTTTCCACCATTTTT
1 -TCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
* *
3447813 GATAAAATCAAAGTTTGTCTCTTAAATAAAACAAACAAGAATACTTCAACTAAACCCCATTCTTT
65 GATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTCAACTAATCCCCATTCTTT
*
3447878 TCAGGATTAGGCACCATAAACATAGTTTCC
130 TCAGGATTAGGCACCATAAACACA-TTTCC
* * * * * * ** * * * *
3447908 ACATTAGGATACACGATATTGTTGTTTTGGTTTTACAAGAAAGGCATTT-TTCCCACCAATATTT
1 TCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACC-ATTTTT
* * * * ** * * * **
3447972 G-TGAAGTCTAAGTTCATG-C-CTTGAA-AAGACAAACCTGAATTCTTGTAA-TGATCTTCATTC
65 GATAAAATCAAAGTT--TGTCTCTTAAATAAGACAAACAAGAATACTT-CAACTAATCCCCATTC
* *
3448032 ATTTT--GTGATTAGGCACAATAAACATATTCTCC
127 -TTTTCAG-GATTAGGCACCATAAACACATT-TCC
* * * ** * * * * * *
3448065 TCATTAGGATAAATGATATTGATGATTTTTTTTTGCATGAAAATCTTTTATTTGCC-CTATTTTT
1 TCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT-CCACCATTTTT
* * ** * * * ***
3448129 CATTAAATCAAA-TTCATAC-CTTAAATAAGACAAGCATCG-ATTC-TCATAAC-AATCTTTATT
65 GATAAAATCAAAGTTTGT-CTCTTAAATAAGACAAACA-AGAATACTTC--AACTAATCCCCATT
* * * * *
3448189 CTTTTCAAGATTGGGAAGCCA-AAAGACATTCCCC
126 CTTTTCAGGATTAGGCA-CCATAAACACATT-TCC
** * *
3448223 TTGTTAGAATACATGACATTAATG-TTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA-C-TGTTTT
1 TCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCAT-TTTT
* * * * * * **
3448285 GATAGAATCATAGTTTATCTCCTAAATACGACAAGCATA-AATAC-TCATACTAATCCCTGTTCT
65 GATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACA-AGAATACTTCA-ACTAATCCCCATTCT
* *
3448348 TTTCATGATTACGCACCATAAA
128 TTTCAGGATTAGGCACCATAAA
3448370 AAGGGTCTTG
Statistics
Matches: 846, Mismatches: 191, Indels: 118
0.73 0.17 0.10
Matches are distributed among these distances:
155 2 0.00
156 23 0.03
157 181 0.21
158 465 0.55
159 157 0.19
160 17 0.02
161 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (158 bp):
TCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
ATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTCAACTAATCCCCATTCTTTT
CAGGATTAGGCACCATAAACACATTTCC
Found at i:3449442 original size:476 final size:475
Alignment explanation
Indices: 3447713--3450420 Score: 3008
Period size: 476 Copynumber: 5.7 Consensus size: 475
3447703 ACTAAACCCC
* * * * * *
3447713 ATTCTTTTCAGGATTAGGCACC-AAAAACACATTCCCTTCATTAGTACACATGACATTGAGGCTT
1 ATTCTTTTCAAGATTGGGAACCAAAAAACATATTCCCTTCATTAGTATACATGACATTGATGCTT
* *
3447777 TGGTGTCGCAAGAAAAGC-TTTCTTTCCACCATTTTTGATAAAATCAAAGTTTGTCTCTTAAATA
66 TGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * * *
3447841 AAACAAACAAGAATACTTCA-ACTAAACCCCATTCTTTTCAGGATTAGGCACCATAAACATAGT-
131 AGACAAACAAGAATAC-TCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAAAATAGTC
* * **
3447904 TTCCACATTAGGATACA-CGATATTGTTGTTTTGGTTTTACAAGAAAGGCATTTTTCCCACCAAT
195 TT-CACATAAGGATACATC-ATATTGTTGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAAT
* ** * * * *
3447968 ATTT-GTGAAGTCTAAGTTCATGCCTTGAAA-AGACAAACCTGAATTCTTGTAATGATCTTCATT
258 -TTTCTTGAAGTCTAAGTTCATGCCTCAAAAGAGACAAACATGGATTCTAGTAATGATCTCCATT
* * *
3448031 CATTTTGTGATTAGGCACAATAAACATATTCTCCTCATTAGGATAAATGATATTGATGATTTTTT
322 CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCT
* *
3448096 TTTGCATGAAAATCTTTTATTTGCCCTATTTTTCATTAAATCAAA-TTCATACCTTAAATAAGAC
387 TTTGCATGGAAATCTTTTATTTGCCCTA-TTTTCCTTAAAT-AAAGTTCATACCTTAAATAAGAC
*
3448160 AAGCATCGATTCTCATAACAATCTTT
450 AAGCATCGATTCTCATAACAATCTCT
* * * * *
3448186 ATTCTTTTCAAGATTGGGAAGCCAAAAGACAT-TCCCCTT-GTTAGAATACATGACATTAATG-T
1 ATTCTTTTCAAGATTGGGAA-CCAAAAAACATATTCCCTTCATTAGTATACATGACATTGATGCT
* * * *
3448248 TTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTG-TTTTGATAGAATCATAGTTTATCTCCTAAAT
65 TTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* * * * * **
3448312 ACGACAAGCATA-AATACTCATACTAATCCCTGTTCTTTTCATGATTACGCACCATAAAAAGGGT
130 AAGACAAACA-AGAATACTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAAAATAGT
** * * ** * *
3448376 CTTGTCATAAGGATACATCATATTGGTGCTTTGGCTTCGCAAGATTGGCTTTTTTCCCACCTATT
194 CTTCACATAAGGATACATCATATTGTTGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATT
** * * ** **
3448441 TTCTCAAAGTCTATGTTCAAGCCTCAAAAGAGATGAACATGGATTCTAGTAATGATCTTTATTCA
259 TTCTTGAAGTCTAAGTTCATGCCTCAAAAGAGACAAACATGGATTCTAGTAATGATCTCCATTCA
* * * *
3448506 TTTTTTGATTAGGCATTATAAACACATTC-CCTTCATTAGCATAAATGATAAT-ATTGATTTTCT
324 TTTTGTGATTAGGCACTATAAACACATTCTCC-TCATTAGGATAAATGATATTGA-TGATTTTCT
* *
3448569 TTTGCATGGAAATCTTTTATTTGCCCTATTTTCCTTTAAATCAAAATTCATACCTTAATTAAGAC
387 TTTGCATGGAAATCTTTTATTTGCCCTATTTTCC-TTAAAT-AAAGTTCATACCTTAAATAAGAC
* *
3448634 AAGCATCAATTCTCGTAACAAT-TCT
450 AAGCATCGATTCTCATAACAATCTCT
* * * * *
3448659 ATTCTTTTCAAGACTGGGATGCC--AAAACACATTCCCCTCATTAGGATACATGACATTGATGCT
1 ATTCTTTTCAAGATTGGGA-ACCAAAAAACATATTCCCTTCATTAGTATACATGACATTGATGCT
* * *
3448722 TTGGTGT--CAAGAAAAGCTTTTCTTTCCACCGTTTCTGATAGAATCATAGTTTGACTCTTAAAT
65 TTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* * * * *
3448785 ATGGCAAACATGAATACTCATACTAATCCCTTTTCCTTTT-AGGATTAGGCACCATAAAAATGGT
130 AAGACAAACAAGAATACTCATACTAATCCCTATT-CTTTTCAGGATTAGGCACCATAAAAATAGT
* * * * *
3448849 CTTCTCATAAGGATACATCATATTGATGCTTTGGTTTCACAAGAATGGC-TTATTTCCCACCAGT
194 CTTCACATAAGGATACATCATATTGTTGCTTTGGTTTCGCAAGAAAGGCATT-TTTCCCACCAAT
* * * **
3448913 TTTCTTAAAGTCTAAGTTCATGCCTCGAATGAGATGAACATGGATTCTAGTAATGATCTCCATTC
258 TTTCTTGAAGTCTAAGTTCATGCCTCAAAAGAGACAAACATGGATTCTAGTAATGATCTCCATTC
* *
3448978 ATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGATAAATGATTTTGATGATTTTCTT
323 ATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTT
* ** * *
3449043 TTGCATGGAAGTCTTTTATTTAACCTATTTTCCTTAAAATGTAAGTTCATCCCTTAAATAAGACA
388 TTGCATGGAAATCTTTTATTTGCCCTATTTTCCTT-AAAT-AAAGTTCATACCTTAAATAAGACA
* *
3449108 AGCATCGATTCTCACAACAGTCTCT
451 AGCATCGATTCTCATAACAATCTCT
** * * *
3449133 ATTCTTTTCATTATTGGGAACCAAAAAACATATTCCCTTCATTAGTATGCAGGAGATTGATGC-T
1 ATTCTTTTCAAGATTGGGAACCAAAAAACATATTCCCTTCATTAGTATACATGACATTGATGCTT
* *** * * * *
3449197 TGGAGTTAAAAGAAAAGCTTTTTTTTCCACCGTTTTTAATAGAATCAAAGTTTGTCCCTAAAATA
66 TGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* *
3449262 AGACAAACAAGAATACTCCA-ACTAATCCCTATTCTTTTTAGGATTAGGCACCATAAACATAGTC
131 AGACAAACAAGAATACT-CATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAAAATAGTC
* * * * *
3449326 ATCAAATTAGGATACA-CAATATTGTTG-TTTCGGTTTCGTAAGAAAGGCACTTTTCCCACCAAT
195 TTCACATAAGGATACATC-ATATTGTTGCTTT-GGTTTCGCAAGAAAGGCATTTTTCCCACCAAT
* * * * *
3449389 TTT-TGTGAAGTCTAAGTCCGTGCCTCAAATGAGACAAACATGGATTTTAGTAATGATCTTCATT
258 TTTCT-TGAAGTCTAAGTTCATGCCTCAAAAGAGACAAACATGGATTCTAGTAATGATCTCCATT
* * * *
3449453 CATTTTGTGATTAGGCACTATAAACACATTCTACTCGTTAGGATAAATGATATTGAAGATTTTTT
322 CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCT
* * * *
3449518 TTTGTACGGAAATCTTTTATTTGCCTTATTTTCCTTTAAATTAAAGTTCATAACTTAAATAAGAC
387 TTTGCATGGAAATCTTTTATTTGCCCTATTTTCC-TTAAA-TAAAGTTCATACCTTAAATAAGAC
* * * *
3449583 AAGCATCAATTCTCACAATAGTCTCCT
450 AAGCATCGATTCTCATAACAATCT-CT
*** * ***
3449610 -TTCTTTTTGTGATTGGGAACCAAATAAA-ATATTCCCTTCTTTAGTACGGATGACATTGATGCT
1 ATTCTTTTCAAGATTGGGAACCAAA-AAACATATTCCCTTCATTAGTATACATGACATTGATGCT
* * * * * * *
3449673 TTGGTGTCGCAGGAAAAGCTTTTCTTTCCACGGTTTTTGTTATAGTGAAAGTTTGTCTCATAAAT
65 TTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* * * *** *
3449738 AAGACAAACAAGAAAACTCCA-ACTAATCCCCATTCTTTTCCA-GATTAGCCATTGTAAACATAG
130 AAGACAAACAAGAATACT-CATACTAATCCCTATTCTTTT-CAGGATTAGGCACCATAAAAATAG
* * * * *
3449801 TCTTCACATTAGGATACATGATATTGTTGTTTTGGTTTCGCAAGAAAGGCATTTTTCCCATCAGT
193 TCTTCACATAAGGATACATCATATTGTTGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAAT
* * * *
3449866 TTTTTTGAAGTCTAAGTTCATGCCTCGAACGAGACAAACGTGGATTCTAGTAATGATCTTCC-TT
258 TTTCTTGAAGTCTAAGTTCATGCCTCAAAAGAGACAAACATGGATTCTAGTAATGATC-TCCATT
*
3449930 CATTTTGTGATTAGGCACTATAAACACGTTCTCCTCATTAGGATAAATGATATTGATGATTTTCT
322 CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCT
** *
3449995 TTTGCATAAAAATCTTTTAGTTGCCCTATTTTCCGTTAAATCAAAGTTCATACCTTAAATAAGAC
387 TTTGCATGGAAATCTTTTATTTGCCCTATTTTCC-TTAAAT-AAAGTTCATACCTTAAATAAGAC
* *
3450060 AAGAATCGATTCTCGTAACAATCTCT
450 AAGCATCGATTCTCATAACAATCTCT
* * *
3450086 ATTCTTTTCAAGATTGGGAAGCTAAAATAC--ATTCTCC-TCATTAGGATACATGACATTGATGC
1 ATTCTTTTCAAGATTGGGAA-CCAAAAAACATATTC-CCTTCATTAGTATACATGACATTGATGC
* * *
3450148 TTTGGTGT-GACAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATTATAA-TTTGACTCTTA
64 TTTGGTGTCG-CAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCA-AAGTTTGTCTCTTA
* * * * * * * *
3450211 AATATGACAAACATGAATACTCACACTCATCCATTTTCTTTTCAAGATTAGGCACCATAAAAATG
127 AATAAGACAAACAAGAATACTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAAAATA
* * * * * *
3450276 GTCTTCTCATAAGGATACATCATATTGATGCTTTGGTTTTGCAAGAATGGC-TTATTTCCTACTA
192 GTCTTCACATAAGGATACATCATATTGTTGCTTTGGTTTCGCAAGAAAGGCATT-TTTCCCACCA
* * * * * * * *
3450340 GTTTTCTTGAGGTCTAAGTTCGTGTCTCAAAAGACACGAACGTGGAATCTAGTAATGATCTCCAT
256 ATTTTCTTGAAGTCTAAGTTCATGCCTCAAAAGAGACAAACATGGATTCTAGTAATGATCTCCAT
*
3450405 TCATTTTGAGATTAGG
321 TCATTTTGTGATTAGG
3450421 ATGCTTTTCT
Statistics
Matches: 1885, Mismatches: 294, Indels: 109
0.82 0.13 0.05
Matches are distributed among these distances:
471 11 0.01
472 200 0.11
473 522 0.28
474 87 0.05
475 59 0.03
476 620 0.33
477 375 0.20
478 11 0.01
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (475 bp):
ATTCTTTTCAAGATTGGGAACCAAAAAACATATTCCCTTCATTAGTATACATGACATTGATGCTT
TGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
AGACAAACAAGAATACTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAAAATAGTCT
TCACATAAGGATACATCATATTGTTGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTT
CTTGAAGTCTAAGTTCATGCCTCAAAAGAGACAAACATGGATTCTAGTAATGATCTCCATTCATT
TTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTG
CATGGAAATCTTTTATTTGCCCTATTTTCCTTAAATAAAGTTCATACCTTAAATAAGACAAGCAT
CGATTCTCATAACAATCTCT
Found at i:3452130 original size:476 final size:474
Alignment explanation
Indices: 3450420--3452789 Score: 2707
Period size: 475 Copynumber: 5.0 Consensus size: 474
3450410 TTGAGATTAG
* * * * *
3450420 GATGCTTTTCTTTTGCATGGAAATC-TTTATTTGCCCTAATTTCCTTAAAATCTAAGTTCATCCC
1 GATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTCCTTTAAATCAAAGTTCATACC
* * *
3450484 TTAAATAAGACAAGCATCAATTCTCGCAATGGTCTCTATTCTTTTCATGATTGGGAACCAAAAA-
66 TTAAATAAGACAAGCATCAGTTCTCGTAATAGTCTCTATTCTTTTCATGATTGGGAACCAAAAAC
* * *
3450548 ACACTTCCCTTCATTAGTACGCAGGACACTGATGCTTTGGTG-T-CAAAAAAAATCTTTTCTTTC
131 ACA-TTCCCTTCATTAGTACGCAGGACATTGATGCTTTGGTGTTGC-AAGAAAAGCTTTTCTTTC
* * * * *
3450611 CACCATTTTTGATAGAATCAAAGTTTGTCCCTTAAATAAGACAAACAAGAATATTCCA-AATAGT
194 CACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACT-CATACTAAT
* ** *
3450675 CCCCATTCTTTTCAGGATTAGGCACAATAAACATAACCTTCACATTAGGATACA-CAATATTGTT
258 -CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCACATTAGGATACATC-ATATTGAT
* * ** *
3450739 GTTTTGGTTTTGCAAGAAAGGCACTTTTCCCACCAATTTTTGTTAAGTCTAAGTTCATGCCTCAA
321 GCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAA-TTTTCTTAAGTCTAAGTTCATGCCTCAA
* * *
3450804 ATAAAACAAACATGGATTCTGGTAATGATCTTCATTCGTTTTGTGATTAGGCACTATAAACACA-
385 ATAAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAT
* ***
3450868 TTCTCCTCGTTAGGATAAGCAATATT
450 TTC-CCTCATTAGGATAAATGATATT
* * * * * *
3450894 GATAATTTTTTTTTGCACGGAAATCTTTTATTTGCCCTATTTTTCTTTAAATAAAAGTTCATAGC
1 GATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTCCTTTAAATCAAAGTTCATACC
* * *
3450959 TTAAATAAGATAAGCATC-GATTCTCGCAATAGTCTCTATTCTTTTGATGATTGGGAACCGAAAA
66 TTAAATAAGACAAGCATCAG-TTCTCGTAATAGTCTCTATTCTTTTCATGATTGGGAACC-AAAA
* * * *
3451023 ACACTTTCCTTTCATTAGTACACAGGACATTGACGCTTTGGTG-T-CAAAGAAAAGCTTTT-TTT
129 ACACATTCCCTTCATTAGTACGCAGGACATTGATGCTTTGGTGTTGC-AAGAAAAGCTTTTCTTT
* * * * *
3451085 TCACCGTTTTTGATAGAATCAAAGTTTGTCCCTTCAATAAGGCAAACAAGAAAACTCCA-ACTAA
193 CCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACT-CATACTAA
*
3451149 TCGCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCACATTAGGATACA-CGATATT-A
257 TC-CCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCACATTAGGATACATC-ATATTGA
* * * * * * **
3451212 CTGTTTTGGTTTCACAAGAAAGGCATTTTTCCCAACAATATTTGTGAAGTCTAAGTTTGTGCCTC
320 -TGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAAT-TTTCTTAAGTCTAAGTTCATGCCTC
* * *
3451277 GAA-AAGACAAACCTGGATTCCAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACAC
383 AAATAAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACAC
*
3451341 A-TTCTCCTTATTAGGATAAATGATATT
448 ATTTC-CCTCATTAGGATAAATGATATT
* * * * *
3451368 GCTGATTTT-TTTTGCATGAAAATCCTTTATTTGCCCTATTTT-TTGTTAAATCAAAGCTCATAC
1 GATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTCCT-TTAAATCAAAGTTCATAC
* * *
3451431 CTTAAATAAGATAAGCATC-GATTCTCGTAATAGTCTCTATTCTTTTCAAGATTGAGAAGCC-AA
65 CTTAAATAAGACAAGCATCAG-TTCTCGTAATAGTCTCTATTCTTTTCATGATTGGGAA-CCAAA
* * *
3451494 AACACATTCCCCTCGTTACGATA--CATGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCT
128 AACACATTCCCTTCATTA-G-TACGCAGGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCT
* * * * *
3451557 TTCGACCGTTTTTGATAGAATCATAGTTTATCT-TCTAAATATGACAAACATGAATACTCATACT
191 TTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCT-TAAATAAGACAAACAAGAATACTCATACT
** * * * ** * * *
3451621 AATCCTTGTTTTTTTTCAAGATTAGGCACCATAAAAAGGGTCTTCTCATAAGGATACATCATCTT
255 AATCC--CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCACATTAGGATACATCATATT
* * * * *
3451686 GGTGCCTTGGTTTTGCAA-AAATGGCTTTTTTCCCACCAGTTTTCTTAATGTCTAAGTTCATCCC
318 GATGCTTTGGTTTCGCAAGAAA-GGCTTTTTTCCCACCAATTTTCTTAA-GTCTAAGTTCATGCC
* * * *
3451750 TCAAATAAGATAAAAATGGATTCTAGTAATAATCTTCATTCA-TTTGCGATTAGGCACTATAAAC
381 TCAAATAAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAAC
*
3451814 ACATTTCCCTCATTAGGATAAATGATAAT
446 ACATTTCCCTCATTAGGATAAATGATATT
* * *
3451843 AATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCATATTTTCCTTTAAATCAAAGTTCATACC
1 GATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTCCTTTAAATCAAAGTTCATACC
* * * *
3451908 ATAAATAAAACAAGCATCAGTTATCATAATAGTCTCTATTCTTTTCATGATTGGGAACCATAAAA
66 TTAAATAAGACAAGCATCAGTTCTCGTAATAGTCTCTATTCTTTTCATGATTGGGAACCA-AAAA
* * * * * *
3451973 GACATTCCCTTCTTTAGTACGCATGACATAGATGCTTTGGTGTTGCAAGAAAAGATTTTCTTTCT
130 CACATTCCCTTCATTAGTACGCAGGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCC
* ** * *
3452038 ACCGTTTTTGTTTCAATCAAAGTTTTTCTCATAAATAAGACAAACAAGAATACTCATACTAATCC
195 ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTCATACTAATCC
* * *
3452103 CTATTCCTTTT-AGGATTAGGCACCATAAACATGGTATTCTC-TTAAGGATACATCATATTGATG
260 C-ATT-CTTTTCAGGATTAGGCACCATAAACATAGTCTTCACATT-AGGATACATCATATTGATG
* * ** ** * *
3452166 CTTTAGTTTCACAAGAATTGCTTTTTTCCCAAAAATTTTCCTAAAGTCTAAG-TCTGTGCCTCAA
322 CTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTT-CTTAAGTCTAAGTTC-ATGCCTCAA
* ** * * * *
3452230 ATGAGATGAACGTAGAGTCTAGTAATGATCTCCATTCATTTTGTGATTAGGCACTATAAACACAT
385 ATAAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAT
*
3452295 TCCCCTCATTAGGATAAATGATATT
450 TTCCCTCATTAGGATAAATGATATT
* * * * *
3452320 GATGATTTTTTTTTCCATGGAATTCTTTTCTTTGCCCTA-TTTCCTTTAAATAAAAGTTCATACC
1 GATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTCCTTTAAATCAAAGTTCATACC
* * *
3452384 TTAAATAAGACAAGCATCAATTATCGTAATAGTCTCTATTCTTTTCATAATTGGGAACCAAAAAA
66 TTAAATAAGACAAGCATCAGTTCTCGTAATAGTCTCTATTCTTTTCATGATTGGGAACC-AAAAA
* * * *
3452449 GACATTCCCTTCATTAGTACGCACGACATTGATGCTTTGGTGTTGCAAGAAACGCTTCTCTTTCC
130 CACATTCCCTTCATTAGTACGCAGGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCC
* * * * *
3452514 ACCGTTTTTGTTATAATCAAAGTTTGTCTCTTAAATAACACAAACAAGAGTACTCTTACTAATCC
195 ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTCATACTAATCC
* * * * *
3452579 CAATCTTTTCAGGATTAGGCACCACAAATATAGTCTTCACATTATGATACATCATATAGATGCTT
260 CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCACATTAGGATACATCATATTGATGCTT
* * * * * *
3452644 TGGTTTCGCAATAAAGGCTTTTTTCCCACAAATTTT-TGTAAAGTCTGAGTTTATGCCGCAAATG
325 TGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTCT-T-AAGTCTAAGTTCATGCCTCAAATA
* *
3452708 AGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATCT-
388 AGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTTC
3452772 CC-CATTAGGATAAATGAT
453 CCTCATTAGGATAAATGAT
3452790 CTTTTTTCTT
Statistics
Matches: 1622, Mismatches: 229, Indels: 91
0.84 0.12 0.05
Matches are distributed among these distances:
472 36 0.02
473 135 0.08
474 183 0.11
475 555 0.34
476 502 0.31
477 211 0.13
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (474 bp):
GATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTCCTTTAAATCAAAGTTCATACC
TTAAATAAGACAAGCATCAGTTCTCGTAATAGTCTCTATTCTTTTCATGATTGGGAACCAAAAAC
ACATTCCCTTCATTAGTACGCAGGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCA
CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTCATACTAATCCC
ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCACATTAGGATACATCATATTGATGCTTT
GGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTCTTAAGTCTAAGTTCATGCCTCAAATAAGA
CAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTTCCCT
CATTAGGATAAATGATATT
Found at i:3452840 original size:134 final size:136
Alignment explanation
Indices: 3452664--3452925 Score: 339
Period size: 134 Copynumber: 1.9 Consensus size: 136
3452654 ATAAAGGCTT
** * ** * *
3452664 TTTTCCCACAAATTTTTGTAAAGTCTGAGTTTATGCCGCAAATGAGACAAACATGGATTCTAGTA
1 TTTTCCCACAAATTTTCCTAAAGTCTAAGTCCATGCCGCAAATGAGACAAACATAGAGTCTAGTA
** * * *
3452729 ATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACA-TCTCC-CATTAGGATAAATGATCT
66 ATGATCTCCATTCAATTTGTGATTAGGCACTATAAACACATTCCCCTCAGTAGGATAAATGATCT
3452792 TTTTTC
131 TTTTTC
* * * *** *
3452798 TTTTCCCCCAAATTTTCCTAAAGTCTAAGTCCGTGCCTCAAATGAGATGGACGTAGAGTCTAGTA
1 TTTTCCCACAAATTTTCCTAAAGTCTAAGTCCATGCCGCAAATGAGACAAACATAGAGTCTAGTA
3452863 ATGATCTCCATTCAATTTGTGATTAGGCACTATAAACACATTCCCCTCAGTAGGATAAATGAT
66 ATGATCTCCATTCAATTTGTGATTAGGCACTATAAACACATTCCCCTCAGTAGGATAAATGAT
3452926 ATTGATGATT
Statistics
Matches: 107, Mismatches: 19, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
134 88 0.82
135 4 0.04
136 15 0.14
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (136 bp):
TTTTCCCACAAATTTTCCTAAAGTCTAAGTCCATGCCGCAAATGAGACAAACATAGAGTCTAGTA
ATGATCTCCATTCAATTTGTGATTAGGCACTATAAACACATTCCCCTCAGTAGGATAAATGATCT
TTTTTC
Found at i:3453449 original size:135 final size:136
Alignment explanation
Indices: 3453274--3453536 Score: 359
Period size: 135 Copynumber: 1.9 Consensus size: 136
3453264 ATAAAGGCTT
** * * ** * *
3453274 TTTTCCCACAAATTTTTGTAAAGTTTGAGTTTGTGTCTCAAATGAGACAAACATGGA-TTCTAGT
1 TTTTCCCACAAATTTTCCTAAAGTCTAAGTCCGTGCCTCAAATGAGACAAACATAGAGTT-TAGT
** * *
3453338 AATGATCTTTATTCATTGTGTGATTAGGCATTATAAACACA-TCTCCTCATTAGGATAAATGATC
65 AATGATCTCCATTCATTGTGTGATTAGGCACTATAAACACATTCCCCTCATTAGGATAAATGATC
3453402 TTTTTTC
130 TTTTTTC
** *
3453409 TTTTCCCACAAATTTTCCTAAAGTCTAAGTCCGTGCCTCAAATGAGATGAACGTAGAGTTTAGTA
1 TTTTCCCACAAATTTTCCTAAAGTCTAAGTCCGTGCCTCAAATGAGACAAACATAGAGTTTAGTA
*
3453474 ATGATCTCCATTCATTTTGTGATTAGGCACTATAAACACATTCCCCTCATTAGGATAAATGAT
66 ATGATCTCCATTCATTGTGTGATTAGGCACTATAAACACATTCCCCTCATTAGGATAAATGAT
3453537 ATTGATGATT
Statistics
Matches: 110, Mismatches: 16, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
135 87 0.79
136 23 0.21
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.37
Consensus pattern (136 bp):
TTTTCCCACAAATTTTCCTAAAGTCTAAGTCCGTGCCTCAAATGAGACAAACATAGAGTTTAGTA
ATGATCTCCATTCATTGTGTGATTAGGCACTATAAACACATTCCCCTCATTAGGATAAATGATCT
TTTTTC
Found at i:3454058 original size:135 final size:136
Alignment explanation
Indices: 3453895--3454149 Score: 404
Period size: 135 Copynumber: 1.9 Consensus size: 136
3453885 TTTTTTCTCA
* * ** * *
3453895 CAAATTTTTCTAAAGTCTGAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTT
1 CAAATTTTCCTAAAGTCTAAGTCCGTGCCTCAAATGAGACAAACATGGAGTCTAGTAATGATCTC
* *
3453960 TATTCATTTTGTGATTAGGCACTATAAACACA-TCTCCTCATTAGGATAAATGATCTTTTTTCTT
66 CATTCATTTTGTGATTAGGCACTATAAACACATTCCCCTCATTAGGATAAATGATCTTTTTTCTT
3454024 TTCCCC
131 TTCCCC
** *
3454030 CAAATTTTCCTAAAGTCTAAGTCCGTGCCTCAAATGAGATGAACGTGGAGTCTAGTAATGATCTC
1 CAAATTTTCCTAAAGTCTAAGTCCGTGCCTCAAATGAGACAAACATGGAGTCTAGTAATGATCTC
3454095 CATTCATTTTGTGATTAGGCACTATAAACACATTCCCCTCATTAGGATAAATGAT
66 CATTCATTTTGTGATTAGGCACTATAAACACATTCCCCTCATTAGGATAAATGAT
3454150 ATTGATGATT
Statistics
Matches: 108, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
135 87 0.81
136 21 0.19
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (136 bp):
CAAATTTTCCTAAAGTCTAAGTCCGTGCCTCAAATGAGACAAACATGGAGTCTAGTAATGATCTC
CATTCATTTTGTGATTAGGCACTATAAACACATTCCCCTCATTAGGATAAATGATCTTTTTTCTT
TTCCCC
Found at i:3455142 original size:609 final size:611
Alignment explanation
Indices: 3452189--3455232 Score: 5603
Period size: 610 Copynumber: 5.0 Consensus size: 611
3452179 AGAATTGCTT
* *
3452189 TTTTCCCAAAAATTTTCCTAAAGTCTAAGTCTGTGCCTCAAATGAGATGAACGTAGAGTCTAGTA
1 TTTTCCCACAAATTTTCCTAAAGTCTAAGTCCGTGCCTCAAATGAGATGAACGTAGAGTCTAGTA
3452254 ATGATCTCCATTCATTTTGTGATTAGGCACTATAAACACATTCCCCTCATTAGGATAAATGATAT
66 ATGATCTCCATTCATTTTGTGATTAGGCACTATAAACACATTCCCCTCATTAGGATAAATGATAT
* *
3452319 TGATGATTTTTTTTTCCATGGAATTCTTTTCTTTGCCCTA-TTTCCTTTAAATAAAAGTTCATAC
131 TGATGATTTTTTTTTGCATGGAACTCTTTTCTTTGCCCTATTTTCCTTTAAATAAAAGTTCATAC
* *
3452383 CTTAAATAAGACAAGCATCAATTATCGTAATAGTCTCTATTCTTTTCATAATTGGGAACCAAAAA
196 CTTAAATAAGACAAGCATCAATTATCGTAATAGTCTCCATTCTTTTCATGATTGGGAACCAAAAA
3452448 AGACATTCCCTTCATTAGTACGCACGACATTGATGCTTTGGTGTTGCAAGAAACGCTTCTCTTTC
261 AGACATTCCCTTCATTAGTACGCACGACATTGATGCTTTGGTGTTGCAAGAAACGCTTCTCTTTC
*
3452513 CACCGTTTTTGTTATAATCAAAGTTTGTCTCTTAAATAACACAAACAAGAGTACTCTTACTAATC
326 CACCGTTTTTGTTATAATCAAAGTTTGTCTCTTAAATAACACAAACAAGAATACTCTTACTAATC
* * * *
3452578 CCAATCTTTTCAGGATTAGGCACCACAAATATAGTCTTCACATTATGATACATCATATAGATGCT
391 CCATTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCACATTAGGATACATCATATTGATGCT
* *
3452643 TTGGTTTCGCAATAAAGGCTTTTTTCCCACAAATTTTTGTAAAGTCTGAGTTTATGCCGCAAATG
456 TTGGTTTCGCAATAAAGGCTTTTTTCCCACAAATTTTTGTAAAGTCTGAGTTTGTGCCTCAAATG
3452708 AGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATCTC
521 AGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATCTC
3452773 C-CATTAGGATAAATGATCTTTTTTC
586 CTCATTAGGATAAATGATCTTTTTTC
* *
3452798 TTTTCCCCCAAATTTTCCTAAAGTCTAAGTCCGTGCCTCAAATGAGATGGACGTAGAGTCTAGTA
1 TTTTCCCACAAATTTTCCTAAAGTCTAAGTCCGTGCCTCAAATGAGATGAACGTAGAGTCTAGTA
* *
3452863 ATGATCTCCATTCAATTTGTGATTAGGCACTATAAACACATTCCCCTCAGTAGGATAAATGATAT
66 ATGATCTCCATTCATTTTGTGATTAGGCACTATAAACACATTCCCCTCATTAGGATAAATGATAT
3452928 TGATGATTTTTTTTTGCATGGAACTCTTTTCTTTGCCCTATTTTCCTTTAAATAAAAGTTCATAC
131 TGATGATTTTTTTTTGCATGGAACTCTTTTCTTTGCCCTATTTTCCTTTAAATAAAAGTTCATAC
* *
3452993 CTTAAATAAGACAAGCATCAATTATCATAATAGTCTCCATTCTTTTCATGATTAGGAACCAAAAA
196 CTTAAATAAGACAAGCATCAATTATCGTAATAGTCTCCATTCTTTTCATGATTGGGAACCAAAAA
* *
3453058 AGACATTCCCTTCATTAGTACGCACGACATTGACGCTTTGGTGTTGCAAGAAACACTTCTCTTTC
261 AGACATTCCCTTCATTAGTACGCACGACATTGATGCTTTGGTGTTGCAAGAAACGCTTCTCTTTC
*
3453123 CACCATTTTTGTTATAATCAAAGTTTGTCTCTTAAATAACACAAACAAGAATACTCTTACTAATC
326 CACCGTTTTTGTTATAATCAAAGTTTGTCTCTTAAATAACACAAACAAGAATACTCTTACTAATC
3453188 CCATTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCACATTAGGATACATCATATTGATGCT
391 CCATTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCACATTAGGATACATCATATTGATGCT
* *
3453253 TTGGTTTCGCAATAAAGGCTTTTTTCCCACAAATTTTTGTAAAGTTTGAGTTTGTGTCTCAAATG
456 TTGGTTTCGCAATAAAGGCTTTTTTCCCACAAATTTTTGTAAAGTCTGAGTTTGTGCCTCAAATG
* *
3453318 AGACAAACATGGATTCTAGTAATGATCTTTATTCATTGTGTGATTAGGCATTATAAACACATCTC
521 AGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATCTC
3453383 CTCATTAGGATAAATGATCTTTTTTC
586 CTCATTAGGATAAATGATCTTTTTTC
*
3453409 TTTTCCCACAAATTTTCCTAAAGTCTAAGTCCGTGCCTCAAATGAGATGAACGTAGAGTTTAGTA
1 TTTTCCCACAAATTTTCCTAAAGTCTAAGTCCGTGCCTCAAATGAGATGAACGTAGAGTCTAGTA
3453474 ATGATCTCCATTCATTTTGTGATTAGGCACTATAAACACATTCCCCTCATTAGGATAAATGATAT
66 ATGATCTCCATTCATTTTGTGATTAGGCACTATAAACACATTCCCCTCATTAGGATAAATGATAT
*
3453539 TGATGATTTTTTTTTTTGCAAGGAACTCTTTTCTTTGCCCTATTTTCCTTTAAATAAAAGTTCAT
131 TGATGA--TTTTTTTTTGCATGGAACTCTTTTCTTTGCCCTATTTTCCTTTAAATAAAAGTTCAT
* * *
3453604 ACCATAAATAAGACATGCATCAATTATCGTAATAGTCTCCATTCTTTTCATGATTAGGAACCAAA
194 ACCTTAAATAAGACAAGCATCAATTATCGTAATAGTCTCCATTCTTTTCATGATTGGGAACCAAA
*
3453669 AAAGACATTCCCTTCATTAGTACGCACGACATTGATGCTTTGGTGTTGCAAGAAACGCTTATCTT
259 AAAGACATTCCCTTCATTAGTACGCACGACATTGATGCTTTGGTGTTGCAAGAAACGCTTCTCTT
*
3453734 TCCACTGTTTTTGTTATAATCAAAGTTTGTCTCTTAAATAACACAAACAAGAATACTCTTACTAA
324 TCCACCGTTTTTGTTATAATCAAAGTTTGTCTCTTAAATAACACAAACAAGAATACTCTTACTAA
*
3453799 TCCCATTCTTTTCAGGATTAGGCACCACAAATATAGTCTTCACATTAGGATACATCATATTGATG
389 TCCCATTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCACATTAGGATACATCATATTGATG
* *
3453864 CTTTGGTTTCGCAATAAAGGCTTTTTTCTCACAAATTTTTCTAAAGTCTGAGTTTGTGCCTCAAA
454 CTTTGGTTTCGCAATAAAGGCTTTTTTCCCACAAATTTTTGTAAAGTCTGAGTTTGTGCCTCAAA
3453929 TGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATC
519 TGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATC
3453994 TCCTCATTAGGATAAATGATCTTTTTTC
584 TCCTCATTAGGATAAATGATCTTTTTTC
* *
3454022 TTTTCCCCCAAATTTTCCTAAAGTCTAAGTCCGTGCCTCAAATGAGATGAACGTGGAGTCTAGTA
1 TTTTCCCACAAATTTTCCTAAAGTCTAAGTCCGTGCCTCAAATGAGATGAACGTAGAGTCTAGTA
3454087 ATGATCTCCATTCATTTTGTGATTAGGCACTATAAACACATTCCCCTCATTAGGATAAATGATAT
66 ATGATCTCCATTCATTTTGTGATTAGGCACTATAAACACATTCCCCTCATTAGGATAAATGATAT
*
3454152 TGATGATTTTTTTTTGCATGGAACTCTTTTTTTTGCCCTATTTTCCTTTAAATAAAAGTTCATAC
131 TGATGATTTTTTTTTGCATGGAACTCTTTTCTTTGCCCTATTTTCCTTTAAATAAAAGTTCATAC
3454217 CTTAAATAAGACAAGCATCAATTATCGTAATAGTCTCCATTCTTTTCATGATTGGGAACCAAAAA
196 CTTAAATAAGACAAGCATCAATTATCGTAATAGTCTCCATTCTTTTCATGATTGGGAACCAAAAA
*
3454282 AGACATTCCCTTCATTAGTACGCACGACATTGATGCTTTGGTGTTGCAAGAAACGCTTCTTTTTC
261 AGACATTCCCTTCATTAGTACGCACGACATTGATGCTTTGGTGTTGCAAGAAACGCTTCTCTTTC
3454347 CACCGTTTTTGTTATAATCAAAGTTTGTCTCTTAAATAACACAAACAAGAATACTCTTACTAATC
326 CACCGTTTTTGTTATAATCAAAGTTTGTCTCTTAAATAACACAAACAAGAATACTCTTACTAATC
3454412 CCATTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCACATTAGGATACATCATATTGATGCT
391 CCATTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCACATTAGGATACATCATATTGATGCT
3454477 TTGGTTTCGCAAT-AAGGCTTTTTTCCCACAAATTTTTGTAAAGTCTGAGTTTGTGCCTCAAATG
456 TTGGTTTCGCAATAAAGGCTTTTTTCCCACAAATTTTTGTAAAGTCTGAGTTTGTGCCTCAAATG
*
3454541 AGACAAACATGGATTCTAGTAATGATCTTTATTCATTGTGTGATTAGGCACTATAAACACATCTC
521 AGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATCTC
3454606 CTCATTAGGATAAATGATCTTTTTTC
586 CTCATTAGGATAAATGATCTTTTTTC
* *
3454632 TTTTCCCACAAATTTTCCTAAAGTCTATGTCCATGCCTCAAATGAGATGAACGTAGAGTCTAGTA
1 TTTTCCCACAAATTTTCCTAAAGTCTAAGTCCGTGCCTCAAATGAGATGAACGTAGAGTCTAGTA
3454697 ATGATCTCCATTCATTTTGTGATTAGGCACTATAAACACATTCCCCTCATTAGGATAAATGATAT
66 ATGATCTCCATTCATTTTGTGATTAGGCACTATAAACACATTCCCCTCATTAGGATAAATGATAT
3454762 TGATGA-TTTTTTTTGCATGGAACTCTTTTCTTTGCCCTATTTTCCTTTAAATAAAAGTTCATAC
131 TGATGATTTTTTTTTGCATGGAACTCTTTTCTTTGCCCTATTTTCCTTTAAATAAAAGTTCATAC
*
3454826 CTTAAATAAGACAAGCATCAATTATCGTAATAGTCTCCATTCGTTTCATGATTGGGAACCAAAAA
196 CTTAAATAAGACAAGCATCAATTATCGTAATAGTCTCCATTCTTTTCATGATTGGGAACCAAAAA
*
3454891 AGACATTCCCTTCATTAGTACACACGACATTGATGCTTTGGTGTTGCAAGAAACGCTTCTCTTTC
261 AGACATTCCCTTCATTAGTACGCACGACATTGATGCTTTGGTGTTGCAAGAAACGCTTCTCTTTC
3454956 CACCGTTTTTGTTATAATCAAAG-TTGTCTCTTAAATAACACAAACAAGAATACTCTTACTAATC
326 CACCGTTTTTGTTATAATCAAAGTTTGTCTCTTAAATAACACAAACAAGAATACTCTTACTAATC
*
3455020 CCATTCTTTTCAGGATTATGCACCACAAACATAGTCTTCACATTAGGATACATCATATTGATGCT
391 CCATTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCACATTAGGATACATCATATTGATGCT
* *
3455085 TTGGTTTCGCAATATAGGCTTTTTTCCCACAAATTTTTGTAAAGTCTGAGTTTGTGCCTTAAATG
456 TTGGTTTCGCAATAAAGGCTTTTTTCCCACAAATTTTTGTAAAGTCTGAGTTTGTGCCTCAAATG
3455150 AGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATCTC
521 AGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATCTC
3455215 CTCATTAGGATAAATGAT
586 CTCATTAGGATAAATGAT
3455233 ATTGATGACT
Statistics
Matches: 2356, Mismatches: 74, Indels: 10
0.97 0.03 0.00
Matches are distributed among these distances:
608 118 0.05
609 500 0.21
610 668 0.28
611 478 0.20
613 592 0.25
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (611 bp):
TTTTCCCACAAATTTTCCTAAAGTCTAAGTCCGTGCCTCAAATGAGATGAACGTAGAGTCTAGTA
ATGATCTCCATTCATTTTGTGATTAGGCACTATAAACACATTCCCCTCATTAGGATAAATGATAT
TGATGATTTTTTTTTGCATGGAACTCTTTTCTTTGCCCTATTTTCCTTTAAATAAAAGTTCATAC
CTTAAATAAGACAAGCATCAATTATCGTAATAGTCTCCATTCTTTTCATGATTGGGAACCAAAAA
AGACATTCCCTTCATTAGTACGCACGACATTGATGCTTTGGTGTTGCAAGAAACGCTTCTCTTTC
CACCGTTTTTGTTATAATCAAAGTTTGTCTCTTAAATAACACAAACAAGAATACTCTTACTAATC
CCATTCTTTTCAGGATTAGGCACCACAAACATAGTCTTCACATTAGGATACATCATATTGATGCT
TTGGTTTCGCAATAAAGGCTTTTTTCCCACAAATTTTTGTAAAGTCTGAGTTTGTGCCTCAAATG
AGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATCTC
CTCATTAGGATAAATGATCTTTTTTC
Found at i:3455794 original size:476 final size:475
Alignment explanation
Indices: 3454632--3463459 Score: 9969
Period size: 476 Copynumber: 18.6 Consensus size: 475
3454622 ATCTTTTTTC
* ** * * * ** * * *
3454632 TTTTCCCACAAATTTTCCTAAAGTCTATGTCCATGCCTCAAATGAGATGAACGTAGAGTCTAGTA
1 TTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTA
* *
3454697 ATGATCTCCATTCATTTTGTGATTAGGCACTATAAACACATTCCCCTCATTAGGATAAATGATAT
66 ATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATAT
* * * *
3454762 TGATGATTTT-TTTTGCATGGAACTCTTTTCTTTGCCCTATTTTCCTTTAAATAAAAGTTCATAC
131 TGATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTCCTTAAAATCAAAGTTCATAC
* * *
3454826 CTTAAATAAGACAAGCATCAATTATCGTAATAGTCTCCATTCGTTTCATGATTGGGAACCAAAAA
196 CTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCATGATTGGGAACC-AAAA
* * * * * * *
3454891 AGACATTCCCTTCATTAGTACACACGACATTGATGCTTTGGTGTTGCAAGAAACGCTTCTCTTTC
260 ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC
* * * * **
3454956 CACCGTTTTTGTTATAATCAAAG-TTGTCTCTTAAATAACACAAACAAGAATACTCTTACTAATC
325 CACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTCCAACTAATC
* * *
3455020 CCATTCTTTTCAGGATTATGCACCACAAACATAGTCTTCACATTAGGATACATCATATTGATGCT
390 CCTTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCACATTAGGATACATCATATTGATGCT
* *
3455085 TTGGTTTCGCAATATAGGCTT
455 TTGGTTTCGCAAGAAAGGCTT
* * * *
3455106 TTTTCCCACAAATTTTTGTAAAGTCTGAGTTTGTGCCTTAAATGAGACAAACATGGATTCTAGTA
1 TTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTA
*
3455171 ATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACA-TCTCCTCATTAGGATAAATGATAT
66 ATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATAT
* * * *
3455235 TGATGACTTTCTTTTGCGTGAAAATTTTTTCA-TTGCCCTATTTTCCTTAAAAT-ATAAGTT-AG
131 TGATGATTTTCTTTTGCATGGAAATCTTTT-ATTTGCCCTATTTTCCTTAAAATCA-AAGTTCA-
* * * * * * *
3455297 T-CTCTTAAAAAAGACAAGCATCAATTCTCATAATAGTCTCCATTCTTTTCACGGTTAGGAACTA
193 TAC-CTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCATGATTGGGAACCA
* * * *
3455361 AAAACACATTCCCTTCGTCAGGATACATGACATTGATGCTTTGATGTCGCAAAAAAAGCTTTTCT
257 AAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCT
* * * * * * *
3455426 TTCAATCGTTTTTAATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCCAACTG
322 TTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTCCAACTA
* * * * * *
3455491 ATCCTCGTTTC-TTTCAGGATTAGGCACCAAAAATATAGCCTTCACTTTAGCAGACA-CGATATT
387 ATCC-C-TTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCACATTAGGATACATC-ATATT
* * *
3455554 GTTG-TTTCGGTTTTGCAAGAAAAG-TAT
449 GATGCTTT-GGTTTCGCAAGAAAGGCT-T
* * ** * *
3455581 TTTTCCCACCAATTTTTGTTAAGTTTAAGTTCAAGCGTCAAATGAGACAAACATGGATTCTAGTT
1 TTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTA
* * * * * *
3455646 TTAATCTTCAATCACTTTCTGATAAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATAT
66 ATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATAT
*
3455711 TGATGATTTTCTTTTGTATGGAAATCTTTTATTTGCCCTATTTTCCTTAAAATCAAAGTTCATAC
131 TGATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTCCTTAAAATCAAAGTTCATAC
* *
3455776 CTTAAATAAGACAAGCATCAATTATCGTAATAGTCTCCATTCTTTTCATGATTGGGAACCAAAAA
196 CTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCATGATTGGGAACC-AAAA
* * * ** * * *
3455841 AGACATTCTCTTCATTAGTACGCACGACATTGATGCTTTGGTGTCGCAAGAAACGCTTCTCTTTC
260 ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC
* * * * ** *
3455906 CACCGTTTTTGTTATAATCAAAGTTTGTCTCTTAAATAACACAAACAAGAATACTCTTACAAATC
325 CACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTCCAACTAAT-
* * *
3455971 CCCATTCTTTTTAGGATTAGGCACCACAAACATAGTCTTCACATTAGGATACATCATATTGATGC
389 CCCTTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCACATTAGGATACATCATATTGATGC
3456036 TTTGGTTTCGCAAGAAAGGCTT
454 TTTGGTTTCGCAAGAAAGGCTT
** * *
3456058 TTTTCCCATAAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGACACAAACATGGATTCTAGTA
1 TTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTA
*
3456123 ATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATAT
66 ATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATAT
* * * * * *
3456188 TGATGACTTTCTTTTGCATGAAAATTTTTTCTTTGCCCTATTTTCCTTAAAATCTAAGTT-AGTC
131 TGATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTCCTTAAAATCAAAGTTCA-TA
* * * * *
3456252 CCTTAAAAAAGACAAGCATCGATTCTTGTAATAGTCTCCATTCTTTTCACGGTTAGGAACCAAAA
195 CCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCATGATTGGGAACCAAAA
* * *
3456317 ACACATTCCCTTCGTCAGGATACATGACATTGATGCTTTGATGTCGCAAGAAAAGCTTTTCTTTC
260 ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC
* * * * *
3456382 CATCATTTTTAATAGAATCAAAGTTTGTCTCTTAAATACGACAAACATGAATACTCCATCTAATC
325 CACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTCCAACTAAT-
* * * * * * * *
3456447 CCCGTTCTTTTTAGGATTAGGCACCAAAAATATAGTCTTCAAATTAGTAGACA-CGATATTGTTG
389 CCCTTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCACATTAGGATACATC-ATATTGATG
* *
3456511 -TTTCGGTTTTGCAAGAAAAG-TAT
453 CTTT-GGTTTCGCAAGAAAGGCT-T
* ** *
3456534 TTTTCCCACCAATTTTTGTTAAGT-TCAAGTTCAAGCGTCAAATGAGACAAACATGGATTCTAGT
1 TTTTCCCACCAATTTTTGTAAAGTCT-AAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGT
* * * *
3456598 ATTAATCTTC-TATCACTTTGTGATAAGGCACTATAAACACATTCTCCTCATTAGGATAAATGAT
65 AATGATCTTCAT-TCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGAT
*
3456662 ATTGATGATTTTCTTTTGTATGGAAATCTTTTATTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
129 ATTGATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
* * * **
3456727 ACCTTAAATAAGCCAAGCATCGATTCTCGCAATGGTCTTTATTCTTTTCATGATTGGGAACCAAA
194 ACCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCATGATTGGGAACCAAA
* * * ** * ***
3456792 AAGCACATACCCTTCATCAGTACGCAGGACATTGATGCTTTGGTGTTAAAAGAAAAGCTTTTCTT
259 AA-CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT
* * * * *
3456857 TCCACCGTTTTTGATAGAATCAAAGTTTCTCCCTAAAATAAGACGAACAAGAATACTCCAACTAA
323 TCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTCCAACTAA
* * * *
3456922 TCCCCATTCCTTTCGGGATTA-GCTACCATAAACGTAGTCTTCACATTAGGATACA-CGATATTG
388 T-CCCTTTCTTTTCAGGATTAGGC-ACCATAAACATAGTCTTCACATTAGGATACATC-ATATTG
* * * **
3456985 ATGTTTTAGTTTCGCAGGACTGG-TAT
450 ATGCTTTGGTTTCGCAAGAAAGGCT-T
* * *
3457011 TTTTCCCACCAATTTTTGTGAAGTCTAAGTTCATGCCTCAAATAAGACAAACATGGATTCTAGTA
1 TTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTA
* * * * * **
3457076 ATGATCTTCATCCATTTTGTGATTAGGCACTATAAACAGATTCTCCTCGTTATGATCAACAATAT
66 ATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATAT
* * * *
3457141 TGATGATTTTTTTTTTCATGGAAATCTTTTATTTGCCCGATTTTCCTTTAAATCAAAGTTCATAC
131 TGATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTCCTTAAAATCAAAGTTCATAC
* * ** * * *
3457206 CTTAAATAAAATAAGCATCGATTCTCACAATAGTCCCCACTCTTTTCATGGTTGGGAACCAAAAA
196 CTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCATGATTGGGAACCAAAAA
* * *** * **
3457271 CACATTCCTTTC-TTCAGTAGGGATTACATTGATGCTTTGGTGTCATAAGAAAAGCTTTTCTTTC
261 CACATTCCCTTCATT-AGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC
* * ** * * *
3457335 CACCATTTCTGATAGAATCATAGTTTAACTCTTAAATATGGCAAACATGAATACT-CATACTAAT
325 CACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTCCA-ACTAAT
* * * * *
3457399 CCCTTTTCTTTTCAGGATTAGGCACCATAAAAATGGTCTTCTCATAAGGGTACATCATATTGATG
389 CCC-TTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCACATTAGGATACATCATATTGATG
*
3457464 CTTTGGTTTCGCAAGAATGGCTT
453 CTTTGGTTTCGCAAGAAAGGCTT
* * ** **
3457487 ATTTCCCACCACTTTTCT-TAAAGTCTAAGTTTTTGCCTCAAATGAGATGAACATGGATTCTAGT
1 TTTTCCCACCAATTTT-TGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGT
* * * * *
3457551 AATGATCTCCGTTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAAGATAAATGATT
65 AATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
* * *
3457616 TTGATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTCCTCAAAATCTAAGTTCATC
130 TTGATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTCCTTAAAATCAAAGTTCATA
*
3457681 CCTTAAATAAGAC-A--ATCGATTCTCGTAACT-GT-TCCATTCTTTTCATGAATGGGAACCAAA
195 CCTTAAATAAGACAAGCATCGATTCTCGTAA-TAGTCTCCATTCTTTTCATGATTGGGAACCAAA
* * * * * * *
3457741 AATCACATT-CCATAATTAGTACACGTGACATTGATGCTTTGGTGTCACAAGAAAAGGTTTTCTT
259 AA-CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT
* * * * *
3457805 TCCACCATTCTT-ATTACACTCAAAGTTTGTCTCATAAATATGACAAACAAGAATACT-CATACT
323 TCCACCATTTTTGA-TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTCCA-ACT
* * * * * *
3457868 AATACCTATTCTTTTCAGGATTAGGCACCATAATCATGGTATTCTCATAAGGATACATCATATTG
386 AATCCCT-TTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCACATTAGGATACATCATATTG
* * * *
3457933 AAGCCTTAGTTTCGCAAGAATGGCTT
450 ATGCTTTGGTTTCGCAAGAAAGGCTT
* * * * ** *
3457959 ATTTCCCACCAGTTTTCT-CAAAGTCTAAGTTCGTGCCTCAAATGAAATGAACATGAATTCTAGT
1 TTTTCCCACCAATTTT-TGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGT
* *
3458023 AATGATCTTC-TATCATTTTGTGATTAGGCGCTATAAACACATTCTCCTTC-TTAGGATAAAAGA
65 AATGATCTTCAT-TCATTTTGTGATTAGGCACTATAAACACATTCTCC-TCATTAGGATAAATGA
* * *
3458086 TTTTGATGATTTTCTTTT-AAGTGGAAATCTTTTATTTGCCCTATTTTCCTTAAAATCTAAGTTC
128 TATTGATGATTTTCTTTTGCA-TGGAAATCTTTTATTTGCCCTATTTTCCTTAAAATCAAAGTTC
* * * ** * * * * * *
3458150 ATCCCTTAAAAAAGGCAAGCATTAATTCTCATAACAGT-TCTATTCTTTTCAAGATTGGGAAGCG
192 ATACCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCATGATTGGGAACCA
* * *
3458214 AAAACACATTCCCCTCATTAGGATACCTGACAGTGATGCTTTGGTGTC-CTAAGAAAAGCTTTTC
257 AAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGC-AAGAAAAGCTTTTC
** *
3458278 TTTCCACCATTTTTGATAGAATCAAAGAATGTCTCATAAATAAGACAAACAAGAATACTCCAACT
321 TTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTCCAACT
* * * ** *
3458343 AATCCTCATTCTTTTCAGGATGAGGCACCGTAAATGTTGTCTTCACATTAGGATACA-CATTATT
386 AATCC-CTTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCACATTAGGATACATCA-TATT
* * *
3458407 GTTGTTTTGGTTTCGCAAGAAAGGCAT
449 GATGCTTTGGTTTCGCAAGAAAGGCTT
* * * *
3458434 TTTTCCCACCAATTTTTGTGAAGTATAACTTCATGCCTCAAATGAGACAAACATGGATTCTAGTA
1 TTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTA
* * *
3458499 ATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAAGATAAATGATTT
66 ATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATAT
* * *
3458564 TGATGATTTTCTTTTGCTTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCTAAGTTCAT-C
131 TGATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTCCTTAAAATCAAAGTTCATAC
* * *
3458628 TCTTAAATAAGACAAGCATCGATTCTCGCAACAGTCTCCATTCTTTTCATGATTAGGAACCAAAA
196 -CTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCATGATTGGGAACC-AAA
* * * * *
3458693 AACACATTCCCTTCATTA-GTTCAAATGACAGTGAAGCTTTGGTGTCACAAGAAAAGCTTTTCTT
259 AACACATTCCCTTCATTAGGAT-ACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT
* * * * *
3458757 TCCACCATTTTTCATAAAATCAAAGTTTGTCCCTTAAATAAAACAAACAAGAATACACCAACTAA
323 TCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTCCAACT-A
* ** **
3458822 ACCCCAATCTTTTCAGGATTAGGTGCCATAAACATAGTCTTCACATTAGGATACA-CGATATT-A
387 ATCCCTTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCACATTAGGATACATC-ATATTGA
* * *
3458885 TTGTTTTGGTTTCACAAGAAAGGCAT
451 -TGCTTTGGTTTCGCAAGAAAGGCTT
* * * * *
3458911 TTTTCCGACCAATATTTGTGAAGTCTAAGTTCGTGCCTCGAAA--AGACAAACCTAGATTCTAGT
1 TTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTC-AAATGAGACAAACATGGATTCTAGT
* *
3458974 AATGATCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCCCCTCATTAGGATAAATGATA
65 AATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
* * * *
3459039 TTGATGATTTTCTTTTGCATGAAAATCTTCTATTTGCCCTATTTT-TTGTAAAATCAAAGTTAAT
130 TTGATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTCCT-TAAAATCAAAGTTCAT
* * * * * *
3459103 ACCTTAAATAAGATAAGTATTGATTCTCATAATAGTCTCTATTCTTTTCAAGATTGGGAAGCC-A
194 ACCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCATGATTGGGAA-CCAA
* * *
3459167 AAACACATTCCCCTCGTTACGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT
258 AAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT
* * * * * * *
3459232 TCCACCATTTTTGATAGAACCATAGTTTATCTCCTAAATACGACAAATATGAATACT-CATACTA
323 TCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTCCA-ACTA
* * * ** * *
3459296 ATCCCTGTTCTTTTTAGGATTAGGCATCATAAAAAGGGTCTTCTCATAAGGATACATCATATTGA
387 ATCCCT-TTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCACATTAGGATACATCATATTGA
* *
3459361 TGCTTTGGTTTCACAAGAATGGCTT
451 TGCTTTGGTTTCGCAAGAAAGGCTT
* * * *
3459386 TTTTCCCACCAGTTTTTGTAAAGTCTAAGTTCATCCCTCAAATGAGACGAACATGGATTCTAGTA
1 TTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTA
3459451 ATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT-TCCCTCATTAGGATAAATGATA
66 ATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT-CCTCATTAGGATAAATGATA
* * * *
3459515 ATAATGATTTTTTTTTGCGTGGAAATCTTTTATTTGCCCTATTTTCCATT-AAATCAAAGTTCAT
130 TTGATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTCC-TTAAAATCAAAGTTCAT
* * * * * * * * * * *
3459579 ACCTTAATTAAGATAAGTATTGATTCTTGTAACAAT-TCTATTCTTTTCAAGATTGAGATGCC-A
194 ACCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCATGATTGGGA-ACCAA
* * *
3459642 AAACTCATTCCCCTCAGTAGGATACATGACATTGATGCTTTGGTG--GCAAGAAAAGCTTTTCTT
258 AAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT
* * * * * *
3459705 TCCACCGTTTATGATAGAATCATAGTTTGACTCTTAAATATGGA-AAACATGAATACT-CATACT
323 TCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATA-AGACAAACAAGAATACTCCA-ACT
* * * * *
3459768 AATCCCTTTTCTTTTCAAGATTAGGCACCATAAAAATGGTCTTCTCATAAGGATACATCATATTG
386 AATCCC-TTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCACATTAGGATACATCATATTG
*
3459833 ATGCTTTGGTTTCGCAAGAATGGCTT
450 ATGCTTTGGTTTCGCAAGAAAGGCTT
* * * *
3459859 ATTTCCCACCACTTTTCT-TAAAGTTTAAATTCGTGCCTCAAATGAGACAAACATGGATTCTAGT
1 TTTTCCCACCAATTTT-TGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGT
* * * *
3459923 AATGATCTTCAATCATTTTCTGATTAGGCACTATAAACACATTCTCCTTACTAGGATAAATGATA
65 AATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
* * *
3459988 TTGATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTCCTTAAAATCTATGTTCATC
130 TTGATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTCCTTAAAATCAAAGTTCATA
* * *
3460053 CCTTAAATAGGACAAGCATCGATTCTCGTAACAGTCTCTATTCTTTTCATGATTGGGAACCCAAA
195 CCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCATGATTGGGAA-CCAAA
* * * * *** *
3460118 AGCACATTCCCTTTAATA-G-TACGTAGGACATTGATGCTTTGGTGTTAAAAAAAAAAGCTTTTC
259 AACACATTCCCTTCATTAGGATAC--ATGACATTGATGCTTTGGTG-TCGCAAGAAAAGCTTTTC
* * * * * *
3460181 TTTCCATCATTTTTGATAGAAACAAAGTTTGCCCCTAAAATAAGACAAACAAGAACACTCCAACT
321 TTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTCCAACT
* * * *
3460246 AATCCCTATTCTTTTCAAGATTAAGCACCATAAACATAGTCTTTCACATTAGGATACGTGATATT
386 AATCCCT-TTCTTTTCAGGATTAGGCACCATAAACATAGTC-TTCACATTAGGATACATCATATT
* *
3460311 GATGTTTTGGTTTCGCAAGAAAGGCAT
449 GATGCTTTGGTTTCGCAAGAAAGGCTT
* * *
3460338 TTTTGCCAGCAATTTTTGTGAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTA
1 TTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTA
* * * * * * *
3460403 ATGATCTGCAATCATTTTGTGATTACGTACTATAAACACATTCTGCTCGTTAGGATAAACGATAT
66 ATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATAT
* * *
3460468 TTATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTAATTTCCTTTAAATCAAAGTTCATAC
131 TGATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTCCTTAAAATCAAAGTTCATAC
* ** *
3460533 CTTAAGTAAGACAAGCATCGATTCTCACAATAGTCTCCTTTCTTTTCATGATTGGGAACCAAAAA
196 CTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCATGATTGGGAACCAAAAA
* * * **
3460598 CCACGTTCCCTTCATTA-G-TACGGAAGGCATTGATGCTTTGGTGTCATAAGAAAAGCTTTTCTT
261 -CACATTCCCTTCATTAGGATAC--ATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT
* * * * * ** * *
3460661 TCCACCGTTTCTGATAGAATCATAGTTTGACTCTTAAATACGGTAAACATGAATACT-CATACTC
323 TCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTCCA-ACTA
* * * * *
3460725 ATCCCTTTTCTTTTAAGGATTAGGCACCATAAAAATGGTCTTCTCATAAGGATACATCATATTGA
387 ATCCC-TTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCACATTAGGATACATCATATTGA
* *
3460790 TGCTTTGGTTTCGCAAGAATGACTT
451 TGCTTTGGTTTCGCAAGAAAGGCTT
* * **
3460815 ATTTCCCACCAGTTTTCT-TAAAGTCTAAGTTCGTGCCTCAAATGAGATGAACATGGATTCTAGT
1 TTTTCCCACCAATTTT-TGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGT
* * * *
3460879 AATGATCTTCATTCATTTTGTGATTTGGTACTATAAACACATTCTCCTCATTAAGATAAATGATT
65 AATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
* * * * * * *
3460944 TTGAAGATTTTCTTTTGCTTTGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTAATC
130 TTGATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTCCTTAAAATCAAAGTTCATA
* * * * * * * *
3461009 CCTTAAGTAAGACAAGAATCGATTCTCATAACAGTATCTACTCTTTTCAAGATTGGGAAACC-AA
195 CCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCATGATTGGG-AACCAAA
** * * ** * *
3461073 AATGCATTCCCTTCATTAGGAAAAATGATGTTGATACTTTGGTGTTGCAAGAAAAGCTTTTCTTT
259 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT
* * * *
3461138 CCACCTTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACATGAATAGT-CATACTAA
324 CCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTCCA-ACTAA
* * * * *
3461202 TCCCCATTCTTTTCAGGATTAGGCAGCATAAACATAGTCTTCTCATTAGGATACA-CGATGTTAA
388 T-CCCTTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCACATTAGGATACATC-ATATTGA
*
3461266 TGCTTTGGTTTCACAAGAAAGGCTT
451 TGCTTTGGTTTCGCAAGAAAGGCTT
*** * ** *
3461291 TCCCCCCACCAAGTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACACCGACTCTAGTA
1 TTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTA
* * *
3461356 ATGATCTTCATTCATTTTGTGATTAGGCACTACAAACACATTCTCCTCATTAGGATATATGATAA
66 ATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATAT
* * * *
3461421 TGATGATTTTCTTTTGCTTGGAAATCTTTTATTTGCCCTATTTTCCTTAAAATCTAAGCTCATCC
131 TGATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTCCTTAAAATCAAAGTTCATAC
* * * * * * *
3461486 CATAAATAAGACAAGCATCGATTCTTGCAACAGTCTCCATTCTTTTCATGATTGGGAGCTGAAGA
196 CTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCATGATTGGGAAC-CAAAA
* * * * *
3461551 ACACATTCCCTTCATTAGCATGCATGACATTGATGCTTTGGTGTCGTATGAAAAGATTTTCTTTC
260 ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC
* * * * *
3461616 CACCACTTTTGTTTTG-ATCCAAGTTTGTCTCATAAATAAGACAAACAAGAATACT-CATACTAA
325 CACCATTTTTG-ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTCCA-ACTAA
** * * * * * * *
3461679 TCGGTATTGTTTTTAGGATTAGGCACCATAAACATGGTCTTCTA-ATAAGGATATATCATACTCA
388 TCCCT-TTCTTTTCAGGATTAGGCACCATAAACATAGTCTTC-ACATTAGGATACATCATATTGA
**
3461743 TGCTTTGGTTTCGCAAGAATTGC-T
451 TGCTTTGGTTTCGCAAGAAAGGCTT
* * *
3461767 TTTTCCCACTAATTTTCT-TAAAGTCTAAGTTCGTGCCTCAAATGAGACGAACATAGACTT-TAG
1 TTTTCCCACCAATTTT-TGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA-TTCTAG
* * * *
3461830 CAATGATCTTCATTCATTTTGTGATTAGACACTATAAACACATTATCCACATTAGGATAAATGAT
64 TAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGAT
* * * * * *
3461895 -TTGGACGACTTTCATTTGCATAGAAATCTTTTTTTTGCCCTATTTTCCCTAAAATCAAAGTTCA
129 ATT-GATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTCCTTAAAATCAAAGTTCA
* * * * * *
3461959 TTCCTTAAAAAATACAAGCATCGATTCTTGTAATAGTTTCCATTCTTTTCAAGATTGGGAAGCC-
193 TACCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCATGATTGGGAA-CCA
* * * ** * *
3462023 AAAACACATTCCGTTCATTAGGATGCAGGATGTTGATGCTTTGGTGTCACAGGAAAAGCTTTTCT
257 AAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCT
* * * **
3462088 TTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAAACTCTTACTA
322 TTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTCCAACTA
* * * * * * * *
3462153 ATCCCCATTCTTTTCAAGATTATGTAGCATAAACATAGTATTCTCATTAGGATACAGCATATTGA
387 AT-CCCTTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCACATTAGGATACATCATATTGA
3462218 TGCTTTGGTTTCGCAAGAAAGGCTT
451 TGCTTTGGTTTCGCAAGAAAGGCTT
**** * * * * * **
3462243 TTTTCTTTGCAATTTTTGTAAAGCCTAAGTTTGCGGCTCAATTGAGACAAACAAAGATTCTAGTA
1 TTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTA
**
3462308 ATGATCTTCATTCATTTTGCAATTAGGCA-TCATAAACACATT-TCCCTCATTAGGATAAATGAT
66 ATGATCTTCATTCATTTTGTGATTAGGCACT-ATAAACACATTCT-CCTCATTAGGATAAATGAT
* * * * * *
3462371 ACTGAAGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTCTCCTTTAAATCAAAGTTCAT
129 ATTGATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
* *
3462436 ACCTTAAATAAGACAAGCATCAATTATCGTAATAGTCTCCATTCTTTTCATGATTGGGAACCAGA
194 ACCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCATGATTGGGAACCA-A
* * ** * *
3462501 AAAGACATTCCCTTCATTAGTACGCATGACATTGATGCTTTGGTGTCGCAAGAAATGCTTCTCTT
258 AAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT
* ** * * * *** *
3462566 TCTACTGTTTTTGTTATAATCAAAGTTTGTCTCTTAAATAAGACAAACAACAATACTTTTACTAG
323 TCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTCCAACTAA
* * * *
3462631 TCCCCATTCTTTTCAAGATTAGGCACCACAAACATAGTTTTCACATTAGGATACATCATATTGAT
388 T-CCCTTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCACATTAGGATACATCATATTGAT
3462696 GCTTTGGTTTCGCAAGAAAGGCTT
452 GCTTTGGTTTCGCAAGAAAGGCTT
* * ** *
3462720 TTTTCCCACTAATTTTCGTAAAGTCTAAGTTTATGCCTCAAATGACACAAACATGGATTCTAGTA
1 TTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTA
* * * *
3462785 ATGATATTCATTCGTTTTGTGATTAGGCACTATAAACATATTCTCCTCATTAGGATAAACGATAT
66 ATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATAT
* * * * *
3462850 TGATGATTTTTTTTTACATGGAAATCTTTTATTTGCCCTATTTTCCTTTAAATAAAAGTTCATAA
131 TGATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTCCTTAAAATCAAAGTTCATAC
* * * * * *
3462915 CTTTAATAAGATAAACATCGATTCTCGCAACAGTCTCTATTCTTTTCATGATTGGGAA-CAAAAA
196 CTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCATGATTGGGAACCAAAAA
* * * * *
3462979 AACACTTACCCTTCATTAGTATTCAGGACATTGA--C------G-C-AAAGAAAAGCTTTTC-TT
261 CACA-TT-CCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT
* * *
3463033 CCACCATTTTTGATAGAATCAAAGTTTGTCCCCTAAATAAGACAAACAAGAATTCTCCAACTAAT
324 CCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTCCAACTAAT
* * * ** *
3463098 CCTTATTCTTTTCAGGATTAGGCACCGTAAACATAGCCTTCACATTAACATACA-CGATATTGTT
389 CCCT-TTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCACATTAGGATACATC-ATATTGAT
* *
3463162 GTTTTGGTTTCGCAAGAAAAGCTT
452 GCTTTGGTTTCGCAAGAAAGGCTT
* * * *
3463186 TTTTCCCACCTATTTTTGTTAAGTCTAAGTTCATGCCTCAAATGAAACAAACATGGATTCTAGTA
1 TTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTA
* * * * * *
3463251 TTAATCTTTATTCATTTTGTGATTACGCACTACAAACGCATT-TCCCTCATTAGGATAAATGATA
66 ATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT-CCTCATTAGGATAAATGATA
* * * *
3463315 ATAATGATTTTCTTTTGCATGGAAA-CTTTTATTTGCCCTATTTTCCTTTAAATCAAAATTCATA
130 TTGATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTCCTTAAAATCAAAGTTCATA
* ** *
3463379 CCTTAATTAAGACAAGCATCGATTCTCG-AAGCTA-T-TATATTCTTTTCAAGATTGGGAAGCC-
195 CCTTAAATAAGACAAGCATCGATTCTCGTAA--TAGTCTCCATTCTTTTCATGATTGGGAA-CCA
3463440 AAAACACATTCCCTTCATTA
257 AAAACACATTCCCTTCATTA
3463460 AGATGCTAGA
Statistics
Matches: 7107, Mismatches: 1100, Indels: 305
0.83 0.13 0.04
Matches are distributed among these distances:
463 10 0.00
464 25 0.00
465 72 0.01
466 259 0.04
467 12 0.00
468 1 0.00
469 1 0.00
471 4 0.00
472 388 0.05
473 489 0.07
474 277 0.04
475 1058 0.15
476 2079 0.29
477 1894 0.27
478 234 0.03
479 304 0.04
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (475 bp):
TTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTA
ATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATAT
TGATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTCCTTAAAATCAAAGTTCATAC
CTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCATGATTGGGAACCAAAAA
CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC
ACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTCCAACTAATCC
CTTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCACATTAGGATACATCATATTGATGCTT
TGGTTTCGCAAGAAAGGCTT
Found at i:3456174 original size:158 final size:155
Alignment explanation
Indices: 3454690--3462854 Score: 879
Period size: 159 Copynumber: 51.5 Consensus size: 155
3454680 GAACGTAGAG
* * *
3454690 TCTAGTAATGATCTCCATTCATTTTGTGATTAGGCACTATAAACACATTCCCCTCATTAGGATAA
1 TCTAGTAATGATCTCCATTC-TTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATAC
* * * * * * ** * **
3454755 ATGATATTGATGATTT-TTTTTGCATGGAACTCTTTTCTTTGCCC-T-ATTTTCCTTTAAA-TAA
65 ATCATATTGATGCTTTGGTTTCGCAAGAAAAGC-TTT-TTT-CCCATAATTTT--TGTAAAGTCT
** * *
3454816 AAGTTCATACCTTAAATAAGACAAGCATCAAT
125 AAGTTTGT-CCTTAAATAAGACAAACATGAAT
* * ** * * * * *
3454848 TATCGTAAT-AGTCTCCATTCGTTTCATGATTGGGAACCAAAAAAGACATTC-CCTTCATTAGTA
1 TCTAGTAATGA-TCTCCATTC-TTTTGTGATTAGGCA-CTAAAAACACATTCTCC-TCATTAGGA
* * * ***
3454911 CACA-CGACATTGATGCTTTGGTGTT-GCAAGAAACGCTTCTCTTT-CCACCGTTTTTGTTATAA
62 TACATC-ATATTGATGCTTTGGT-TTCGCAAGAAAAGCTT-T-TTTCCCATAATTTTTG-TA-AA
* * *
3454973 -TCAAAG-TTGTCTCTTAAATAACACAAACAAGAAT
121 GTCTAAGTTTGTC-CTTAAATAAGACAAACATGAAT
* ** * * * * * * * * *
3455007 ACTCTTACTAATC-CCATTCTTTTCAG-GATTATGCACCACAAACATAGTCTTCACATTAGGATA
1 TCTAGTAATGATCTCCATTCTTTT--GTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATA
* * * * *
3455070 CATCATATTGATGCTTTGGTTTCGCAATATAGGCTTTTTTCCCACAAATTTTTGTAAAGTCTGAG
64 CATCATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTTTCCCA-TAATTTTTGTAAAGTCTAAG
* *
3455135 TTTGTGCCTTAAATGAGACAAACATGGAT
128 TTTGT-CCTTAAATAAGACAAACATGAAT
** * *
3455164 TCTAGTAATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACA-TCTCCTCATTAGGATAA
1 TCTAGTAATGATCTCCATTC-TTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATAC
* * * ** ** * *
3455228 ATGATATTGATGACTTT-CTTTTGCGTGAAAATTTTTTCATTGCCC-T-ATTTTCCT-TAAAATA
65 ATCATATTGATG-CTTTGGTTTCGCAAGAAAAGCTTTT--TT-CCCATAATTTT--TGTAAAGTC
* * * *
3455289 TAAGTTAGTCTCTTAAAAAAGACAAGCATCAAT
124 TAAGTTTGTC-CTTAAATAAGACAAACATGAAT
** * * * *
3455322 TCTCA-TAAT-AGTCTCCATTCTTTTCACGGTTAGGAACTAAAAACACATTC-CCTTCGTCAGGA
1 TCT-AGTAATGA-TCTCCATTCTTTT-GTGATTAGGCACTAAAAACACATTCTCC-TCATTAGGA
* * * * * * * ** *
3455384 TACATGACATTGATGCTTTGATGTCGCAAAAAAAGCTTTTCTTTCAATCGTTTTTAATAGAA-TC
62 TACATCATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTT-TTCCCATAATTTTT-GTA-AAGTC
* *
3455448 AAAGTTTGTCTCTTAAATACGACAAACATGAAT
124 TAAGTTTGTC-CTTAAATAAGACAAACATGAAT
* ** ** * * * * ** * * * * *
3455481 ACT-CCAACTGATCCTCGTTTCTTTCAG-GATTAGGCACCAAAAATATAGCCTTCACTTTAGCAG
1 TCTAGTAA-TGAT-CTCCATTCTTT-TGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGAT
* * * * *
3455544 ACA-CGATATTGTTG-TTTCGGTTTTGCAAGAAAAG-TATTTTTCCCACCAATTTTTGTTAAGTT
63 ACATC-ATATTGATGCTTT-GGTTTCGCAAGAAAAGCT-TTTTTCCCA-TAATTTTTGTAAAGTC
* * * * *
3455606 TAAGTTCAAG-CGTCAAATGAGACAAACATGGAT
124 TAAGTT--TGTCCTTAAATAAGACAAACATGAAT
** * * * * * * * *
3455639 TCTAGTTTTAATCTTCAATCACTTTCTGATAAGGCACTATAAACACATTCTCCTCATTAGGATAA
1 TCTAGTAATGATCTCCATTC-TTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATAC
* * ** * * * * * * *
3455704 ATGATATTGATGATTTTCTTTTGTATGGAAATCTTTTATTTGCCC-T-ATTTTCCT-TAAAATCA
65 ATCATATTGATGCTTTGGTTTCGCAAGAAAAGC-TTT-TTT-CCCATAATTTT--TGTAAAGTCT
** * *
3455766 AAGTTCATACCTTAAATAAGACAAGCATCAAT
125 AAGTTTGT-CCTTAAATAAGACAAACATGAAT
* * * * * * * * * *
3455798 TATCGTAAT-AGTCTCCATTCTTTTCATGATTGGGAACCAAAAAAGACATTCTCTTCATTAGTAC
1 TCTAGTAATGA-TCTCCATTCTTTT-GTGATTAGGCA-CTAAAAACACATTCTCCTCATTAGGAT
* * * * ***
3455862 GCA-CGACATTGATGCTTTGGTGTCGCAAGAAACGCTTCTCTTT-CCACCGTTTTTGTTATAA-T
63 ACATC-ATATTGATGCTTTGGTTTCGCAAGAAAAGCTT-T-TTTCCCATAATTTTTG-TA-AAGT
* * *
3455924 CAAAGTTTGTCTCTTAAATAACACAAACAAGAAT
123 CTAAGTTTGTC-CTTAAATAAGACAAACATGAAT
* ** * * * * * * * *
3455958 ACTCTTACA-AATCCCCATTCTTTT-TAGGATTAGGCACCACAAACATAGTCTTCACATTAGGAT
1 TCTAGTA-ATGATCTCCATTCTTTTGT--GATTAGGCACTAAAAACACATTCTCCTCATTAGGAT
*
3456021 ACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCATAAATTTTTGTAAAGTCTAA
63 ACATCATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTTTCCCAT-AATTTTTGTAAAGTCTAA
* * * *
3456086 GTTTGTGCCTCAAATGACACAAACATGGAT
127 GTTTGT-CCTTAAATAAGACAAACATGAAT
** * *
3456116 TCTAGTAATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAA
1 TCTAGTAATGATCTCCATTC-TTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATAC
* * * * ** *
3456181 ATGATATTGATGACTTT-CTTTTGCATGAAAATTTTTTCTTTGCCC-T-ATTTTCCT-TAAAATC
65 ATCATATTGATG-CTTTGGTTTCGCAAGAAAA-GCTTT-TTT-CCCATAATTTT--TGTAAAGTC
* * *
3456242 TAAGTTAGTCCCTTAAAAAAGACAAGCATCG-AT
124 TAAGTTTGT-CCTTAAATAAGACAAACAT-GAAT
* ** * * * * *
3456275 TCTTGTAAT-AGTCTCCATTCTTTTCACGGTTAGGAACCAAAAACACATTC-CCTTCGTCAGGAT
1 TCTAGTAATGA-TCTCCATTCTTTT-GTGATTAGGCACTAAAAACACATTCTCC-TCATTAGGAT
* * * * * * * *
3456338 ACATGACATTGATGCTTTGATGTCGCAAGAAAAGCTTTTCTTTCCATCATTTTTAATAGAA-TCA
63 ACATCATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTT-TTCCCATAATTTTT-GTA-AAGTCT
*
3456402 AAGTTTGTCTCTTAAATACGACAAACATGAAT
125 AAGTTTGTC-CTTAAATAAGACAAACATGAAT
* * * * * * * * * * ** *
3456434 ACTCCA-T-CTAATCCCCGTTCTTTT-TAGGATTAGGCACCAAAAATATAGTCTTCAAATTAGTA
1 --TCTAGTAATGATCTCCATTCTTTTGT--GATTAGGCACTAAAAACACATTCTCCTCATTAGGA
* * * * *
3456496 GACA-CGATATTGTTG-TTTCGGTTTTGCAAGAAAAG-TATTTTTCCCACCAATTTTTGTTAAGT
62 TACATC-ATATTGATGCTTT-GGTTTCGCAAGAAAAGCT-TTTTTCCCA-TAATTTTTGTAAAGT
* * * * *
3456558 -TCAAGTTCAAG-CGTCAAATGAGACAAACATGGAT
123 CT-AAGTT--TGTCCTTAAATAAGACAAACATGAAT
* * * * * *
3456592 TCTAGTATTAATCTTC-TATCACTTTGTGATAAGGCACTATAAACACATTCTCCTCATTAGGATA
1 TCTAGTAATGATCTCCAT-TC-TTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATA
* * * ** * * * * * *
3456656 AATGATATTGATGATTTTCTTTTGTATGGAAATCTTTTATTTGCCC-T-ATTTTCCT-TAAAATC
64 CATCATATTGATGCTTTGGTTTCGCAAGAAAAGC-TTT-TTT-CCCATAATTTT--TGTAAAGTC
* ** * *
3456718 AAAGTTCATACCTTAAATAAGCCAAGCATCG-AT
124 TAAGTTTGT-CCTTAAATAAGACAAACAT-GAAT
* * * ** * * * * * * * *
3456751 TCTCGCAATGGTCTTTATTCTTTTCATGATTGGGAACCAAAAAGCACATAC-CCTTCATCAGTAC
1 TCTAGTAATGATCTCCATTCTTTT-GTGATTAGGCACTAAAAA-CACATTCTCC-TCATTAGGAT
* ** * ** * ***
3456815 GCAGGACATTGATGCTTTGGTGTT-AAAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAA-TC
63 ACATCATATTGATGCTTTGGT-TTCGCAAGAAAAGCTTTT-TTCCCATAATTTTTG-TA-AAGTC
* * * * *
3456878 AAAGTTTCTCCCTAAAATAAGACGAACAAGAAT
124 TAAGTTTGT-CCTTAAATAAGACAAACATGAAT
* ** * * * * * * ** * * *
3456911 ACT-CCAACTAATCCCCATTCCTTTCGGGATTA-GCTACCATAAACGTAGTCTTCACATTAGGAT
1 TCTAGTAA-TGATCTCCATT-CTTTTGTGATTAGGC-ACTAAAAACACATTCTCCTCATTAGGAT
* * * ** * * *
3456974 ACA-CGATATTGATGTTTTAGTTTCGC-AGGACTGGTATTTTTCCCACCAATTTTTGTGAAGTCT
63 ACATC-ATATTGATGCTTTGGTTTCGCAAGAAAAGCT-TTTTTCCCA-TAATTTTTGTAAAGTCT
* *
3457037 AAGTTCATG-CCTCAAATAAGACAAACATGGAT
125 AAGTT--TGTCCTTAAATAAGACAAACATGAAT
* * * * * *
3457069 TCTAGTAATGATCTTCATCCATTTTGTGATTAGGCACTATAAACAGATTCTCCTCGTTATGAT-C
1 TCTAGTAATGATCTCCATTC-TTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATAC
* * ** ** * * *
3457133 AACAATATTGATGATTTTTTTTTTCATGGAAATCTTTTATTTGCCCGAT--TTTCCTT-TAAA-T
65 ATC-ATATTGATGCTTTGGTTTCGCAAGAAAAGC-TTT-TTT-CCC-ATAATTT--TTGTAAAGT
* ** * * *
3457194 CAAAGTTCATACCTTAAATAAAATAAGCATCG-AT
123 CTAAGTTTGT-CCTTAAATAAGACAAACAT-GAAT
* * * * * * * * * *
3457228 TCTCA-CAAT-AGTCCCCACTCTTTTCATGGTTGGGAACCAAAAACACATTCCTTTCTTCAGTAG
1 TCT-AGTAATGA-TCTCCATTCTTTT-GTGATTAGGCACTAAAAACACATT-C--TCCTCATTA-
* * ** * ** *
3457291 GGAT---T-ACATTGATGCTTTGGTGTCATAAGAAAAGCTTTTCTTTCCACCATTTCTGATAGAA
59 GGATACATCATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTT-TTCCCATAATTTTTG-TA-AA
** * *
3457352 -TC-ATAGTTTAACTCTTAAATATGGCAAACATGAAT
121 GTCTA-AGTTTGTC-CTTAAATAAGACAAACATGAAT
* * * * * * * *
3457387 ACTCA-TACTAATC-CCTTTTCTTTTCAG-GATTAGGCACCATAAA-A-ATGGTCTTCTCATAAG
1 TCT-AGTAATGATCTCC-ATTCTTTT--GTGATTAGGCACTAAAAACACAT--TCTCCTCATTAG
* ** * * *
3457447 GGTACATCATATTGATGCTTTGGTTTCGCAAGAATGGCTTATTTCCCACCACTTTTCT-TAAAGT
60 GATACATCATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTTTCCCA-TAATTTT-TGTAAAGT
* * * ** *
3457511 CTAAGTTTTTGCCTCAAATGAGATGAACATGGAT
123 CTAAGTTTGT-CCTTAAATAAGACAAACATGAAT
* * * * *
3457545 TCTAGTAATGATCTCCGTTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAAGATAA
1 TCTAGTAATGATCTCCATTC-TTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATAC
* * * ** * * * * ** *
3457610 ATGATTTTGATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCC-T-ATTTTCCTCAAAATCTA
65 ATCATATTGATGCTTTGGTTTCGCAAGAAAAGC-TTT-TTT-CCCATAATTTTTGT-AAAGTCTA
** *
3457673 AGTTCATCCCTTAAATAAGACAATC--G-AT
126 AGTTTGT-CCTTAAATAAGACAAACATGAAT
* * * * * * * * * *
3457701 TCTCGTAACTG-T-TCCATTCTTTTCATGAATGGGAACCAAAAATCACATTC-CATAATTAGTAC
1 TCTAGTAA-TGATCTCCATTCTTTT-GTGATTAGGCACTAAAAA-CACATTCTCCTCATTAGGAT
* * * * * * * ** * * *
3457763 ACGTGACATTGATGCTTTGGTGTCACAAGAAAAGGTTTTCTTTCCACCATTCTTAT-TACACTCA
63 ACATCATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTT-TTCCCATAATT-TT-TGTAAAGTCT
* * *
3457827 AAGTTTGTCTCATAAATATGACAAACAAGAAT
125 AAGTTTGTC-CTTAAATAAGACAAACATGAAT
* * * * * *** * * *
3457859 ACTCATACTAAT-A-C-CTATTCTTTTCAG-GATTAGGCACCATAATCATGGTATTCTCATAAGG
1 --TC-TAGTAATGATCTCCATTCTTTT--GTGATTAGGCACTAAAAACACATTCTCCTCATTAGG
* * * ** * ** * *
3457920 ATACATCATATTGAAGCCTTAGTTTCGCAAGAATGGCTTATTTCCCACCAGTTTTCTCAAAGTCT
61 ATACATCATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTTTCCCATAATTTTTGT-AAAGTCT
* * **
3457985 AAGTTCGTGCCTCAAATGAA-ATGAACATGAAT
125 AAGTTTGT-CCTTAAAT-AAGACAAACATGAAT
* * *
3458017 TCTAGTAATGATCTTC-TATCATTTTGTGATTAGGCGCTATAAACACATTCTCCTTC-TTAGGAT
1 TCTAGTAATGATCTCCAT-TC-TTTTGTGATTAGGCACTAAAAACACATTCTCC-TCATTAGGAT
* ** * * ** * * *
3458080 AAAAGATTTTGATGATTTTCTTT--TAAGTGGAAATCTTTTATTTGCCC-T-ATTTTCCT-TAAA
63 ACATCATATTGATGCTTTGGTTTCGCAA--GAAAAGC-TTT-TTT-CCCATAATTTT--TGTAAA
* ** * * * *
3458140 ATCTAAGTTCATCCCTTAAAAAAGGCAAGCATTAAT
121 GTCTAAGTTTGT-CCTTAAATAAGACAAACATGAAT
* * ** * * * *
3458176 TCTCA-TAA-CAGT-TCTATTCTTTTCAAGATTGGGAAGC-GAAAACACATTCCCCTCATTAGGA
1 TCT-AGTAATGA-TCTCCATTCTTTT-GTGATTAGGCA-CTAAAAACACATTCTCCTCATTAGGA
* * * * * * **
3458237 TACCTGACAGTGATGCTTTGGTGTC-CTAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAA-T
62 TACATCATATTGATGCTTTGGTTTCGC-AAGAAAAGCTTTT-TTCCCATAATTTTTG-TA-AAGT
* ** * *
3458300 CAAAGAATGTCTCATAAATAAGACAAACAAGAAT
123 CTAAGTTTGTC-CTTAAATAAGACAAACATGAAT
* ** * * *** *** * *
3458334 ACT-CCAACTAATC-CTCATTCTTTTCAG-GATGAGGCACCGTAAA-TGTTGTCTTCACATTAGG
1 TCTAGTAA-TGATCTC-CATTCTTTT--GTGATTAGGCACTAAAAACACAT-TCTCCTCATTAGG
* * * * * * *
3458395 ATACA-CATTATTGTTGTTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTGTGAAGTA
61 ATACATCA-TATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTTTCCCA-TAATTTTTGTAAAGTC
* * * *
3458459 TAACTTCATG-CCTCAAATGAGACAAACATGGAT
124 TAAGTT--TGTCCTTAAATAAGACAAACATGAAT
* * * * *
3458492 TCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAAGATAA
1 TCTAGTAATGATCTCCATTC-TTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATAC
* * * ** * ** * * *
3458557 ATGATTTTGATGATTTTCTTTTGCTTGGAAATCTTTTCTTTGCCC-T-ATTTTCCT-TAAAATCT
65 ATCATATTGATGCTTTGGTTTCGCAAGAAAAGC-TTT-TTT-CCCATAATTTT--TGTAAAGTCT
** *
3458619 AAGTTCATCTCTTAAATAAGACAAGCATCG-AT
125 AAGTTTGTC-CTTAAATAAGACAAACAT-GAAT
* * * * * * *
3458651 TCTCGCAA-CAGTCTCCATTCTTTTCATGATTAGGAACCAAAAAACACATTC-CCTTCATTA-GT
1 TCTAGTAATGA-TCTCCATTCTTTT-GTGATTAGGCA-CTAAAAACACATTCTCC-TCATTAGGA
* * * * * * * * ** * *
3458713 TCAAATGACAGTGAAGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTCATAAAATC
62 T-ACATCATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTT-TTCCCATAATTTTT-GTAAAGTC
* * *
3458778 AAAGTTTGTCCCTTAAATAAAACAAACAAGAAT
124 TAAGTTTGT-CCTTAAATAAGACAAACATGAAT
* ** * * * * ** * * * * * *
3458811 AC-ACCAACTAAACCCCAATCTTTTCAG-GATTAGGTGCCATAAACATAGTCTTCACATTAGGAT
1 TCTAGTAA-TGATCTCCATTCTTTT--GTGATTAGGCACTAAAAACACATTCTCCTCATTAGGAT
* * * * * * * *
3458874 ACA-CGATATT-ATTGTTTTGGTTTCACAAGAAAGGCATTTTTCCGACCAATATTTGTGAAGTCT
63 ACATC-ATATTGA-TGCTTTGGTTTCGCAAGAAAAGCTTTTTTCCCA-TAATTTTTGTAAAGTCT
* ** *
3458937 AAGTTCGTGCCTCGAA-AAGACAAACCT-AGAT
125 AAGTTTGT-CCTTAAATAAGACAAACATGA-AT
* * * * *
3458968 TCTAGTAATGATCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCCCCTCATTAGGATAA
1 TCTAGTAATGATCTCCATTC-TTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATAC
* * ** * * * * * *
3459033 ATGATATTGATGATTTTCTTTTGCATGAAAATCTTCTATTTGCCC-TATTTTTTGTAAAATCAAA
65 ATCATATTGATGCTTTGGTTTCGCAAGAAAAGCTT-T-TTT-CCCATAATTTTTGTAAAGTCTAA
** * **
3459097 GTTAATACCTTAAATAAGATAAGTATTG-AT
127 GTTTGT-CCTTAAATAAGACAAACA-TGAAT
* ** * * * * * *
3459127 TCTCA-TAAT-AGTCTCTATTCTTTTCAAGATTGGGAAGC-CAAAACACATTCCCCTCGTTACGA
1 TCT-AGTAATGA-TCTCCATTCTTTT-GTGATTAGGCA-CTAAAAACACATTCTCCTCATTAGGA
* * * * **
3459189 TACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAA--C
62 TACATCATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTT-TTCCCATAATTTTTG-TA-AAGTC
* * * * *
3459252 CATAGTTTATCTCCTAAATACGACAAATATGAAT
124 TA-AGTTTGTC-CTTAAATAAGACAAACATGAAT
* * * * *** * *
3459286 ACTCA-TACTAATC-CCTGTTCTTTT-TAGGATTAGGCA-TCATAAAA-AGGGTCTTCTCATAAG
1 TCT-AGTAATGATCTCC-ATTCTTTTGT--GATTAGGCACT-A-AAAACACATTCTCCTCATTAG
* ** * *
3459346 GATACATCATATTGATGCTTTGGTTTCACAAGAATGGCTTTTTTCCCACCAGTTTTTGTAAAGTC
60 GATACATCATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTTTCCCA-TAATTTTTGTAAAGTC
** * * * *
3459411 TAAGTTCATCCCTCAAATGAGACGAACATGGAT
124 TAAGTTTGT-CCTTAAATAAGACAAACATGAAT
* *
3459444 TCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT-TCCCTCATTAGGATA
1 TCTAGTAATGATCTCCATTC-TTTTGTGATTAGGCACTAAAAACACATTCT-CCTCATTAGGATA
* * * * * ** * ** * *
3459508 AATGATAATAATGATTTTTTTTTGCGTGGAAATCTTTTATTTGCCC-T-ATTTTCCAT-TAAA-T
64 CATCATATTGATGCTTTGGTTTCGCAAGAAAAGC-TTT-TTT-CCCATAATTTT---TGTAAAGT
* ** * * **
3459569 CAAAGTTCATACCTTAATTAAGATAAGTATTG-AT
123 CTAAGTTTGT-CCTTAAATAAGACAAACA-TGAAT
* ** * ** * * *
3459603 TCTTGTAACAAT-TCTATTCTTTTCAAGATTGAGATGC-C--AAAACTCATTCCCCTCAGTAGGA
1 TCTAGTAATGATCTCCATTCTTTT-GTGATT-AG--GCACTAAAAACACATTCTCCTCATTAGGA
* * * * *** *
3459664 TACATGACATTGATGCTTTGG--TGGCAAGAAAAGCTTTTCTTTCCACCGTTTATGATAGAA-TC
62 TACATCATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTT-TTCCCATAATTTTTG-TA-AAGTC
* *
3459726 -ATAGTTTGACTCTTAAATATGGA-AAACATGAAT
124 TA-AGTTTGTC-CTTAAATA-AGACAAACATGAAT
* * * * ** * * * *
3459759 ACTCA-TACTAATC-CCTTTTCTTTTCAAGATTAGGCACCATAAA-A-ATGGTCTTCTCATAAGG
1 TCT-AGTAATGATCTCC-ATTCTTTT-GTGATTAGGCACTAAAAACACAT--TCTCCTCATTAGG
** * * * *
3459820 ATACATCATATTGATGCTTTGGTTTCGCAAGAATGGCTTATTTCCCACCACTTTTCT-TAAAGTT
61 ATACATCATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTTTCCCA-TAATTTT-TGTAAAGTC
* * * * *
3459884 TAAATTCGTGCCTCAAATGAGACAAACATGGAT
124 TAAGTTTGT-CCTTAAATAAGACAAACATGAAT
* * * * * * *
3459917 TCTAGTAATGATCTTCAATCATTTTCTGATTAGGCACTATAAACACATTCTCCTTACTAGGATAA
1 TCTAGTAATGATCTCCATTC-TTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATAC
* * ** * * * * *
3459982 ATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCC-T-ATTTTCCT-TAAAATCT
65 ATCATATTGATGCTTTGGTTTCGCAAGAAAAGC-TTT-TTT-CCCATAATTTT--TGTAAAGTCT
* ** * *
3460044 ATGTTCATCCCTTAAATAGGACAAGCATCG-AT
125 AAGTTTGT-CCTTAAATAAGACAAACAT-GAAT
* * * * * * * * **
3460076 TCTCGTAA-CAGTCTCTATTCTTTTCATGATTGGGAACCCAAAAGCACATTC-CCT--TTAATAG
1 TCTAGTAATGA-TCTCCATTCTTTT-GTGATTAGGCA-CTAAAAACACATTCTCCTCATTAGGA-
** * *** * * *
3460137 TACGTAGGACATTGATGCTTTGGTGTTAAAAAAAAAAGCTTTTCTTTCCATCATTTTTGATAGAA
62 TAC--ATCATATTGATGCTTTGGT-TTCGCAAGAAAAGCTTTT-TTCCCATAATTTTTG-TA-AA
* * * * * *
3460202 -ACAAAGTTTGCCCCTAAAATAAGACAAACAAGAAC
121 GTCTAAGTTTG-TCCTTAAATAAGACAAACATGAAT
* ** * ** * * * * * * *
3460237 ACT-CCAACTAATC-CCTATTCTTTTCAAGATTAAGCACCATAAACATAGTCTTTCACATTAGGA
1 TCTAGTAA-TGATCTCC-ATTCTTTT-GTGATTAGGCACTAAAAACACATTC-TCCTCATTAGGA
* * * * * * * *
3460300 TACGTGATATTGATGTTTTGGTTTCGCAAGAAAGGCATTTTTGCCAGCAATTTTTGTGAAGTCTA
62 TACATCATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTTTCCCA-TAATTTTTGTAAAGTCTA
* * * *
3460365 AGTTCGTGCCTCAAATGAGACAAACATGGAT
126 AGTTTGT-CCTTAAATAAGACAAACATGAAT
* * * * * * *
3460396 TCTAGTAATGATCTGCAATCATTTTGTGATTACGTACTATAAACACATTCTGCTCGTTAGGATA-
1 TCTAGTAATGATCTCCATTC-TTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATAC
* * * ** * * * *
3460460 AACGATATTTATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCC-TAATTTCCTT-TAAA-TC
65 ATC-ATATTGATGCTTTGGTTTCGCAAGAAAAGC-TTT-TTT-CCCATAATTT--TTGTAAAGTC
* ** * *
3460522 AAAGTTCATACCTTAAGTAAGACAAGCATCG-AT
124 TAAGTTTGT-CCTTAAATAAGACAAACAT-GAAT
* * * * * * *
3460555 TCTCA-CAAT-AGTCTCCTTTCTTTTCATGATTGGGAACCAAAAACCACGTTC-CCTTCATTA-G
1 TCT-AGTAATGA-TCTCCATTCTTTT-GTGATTAGGCACTAAAAA-CACATTCTCC-TCATTAGG
**** * ** * *** *
3460616 -TACGGAAGGCATTGATGCTTTGGTGTCATAAGAAAAGCTTTTCTTTCCACCGTTTCTGATAGAA
61 ATAC--ATCATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTT-TTCCCATAATTTTTG-TA-AA
* * **
3460680 -TC-ATAGTTTGACTCTTAAATACGGTAAACATGAAT
121 GTCTA-AGTTTGTC-CTTAAATAAGACAAACATGAAT
* * * * * * * *
3460715 ACTCA-TACTCATC-CCTTTTCTTTTAAG-GATTAGGCACCATAAA-A-ATGGTCTTCTCATAAG
1 TCT-AGTAATGATCTCC-ATTCTTTT--GTGATTAGGCACTAAAAACACAT--TCTCCTCATTAG
* * * *
3460775 GATACATCATATTGATGCTTTGGTTTCGCAAG-AATGACTTATTTCCCACCAGTTTTCT-TAAAG
60 GATACATCATATTGATGCTTTGGTTTCGCAAGAAAAG-CTTTTTTCCCA-TAATTTT-TGTAAAG
* * * ** *
3460838 TCTAAGTTCGTGCCTCAAATGAGATGAACATGGAT
122 TCTAAGTTTGT-CCTTAAATAAGACAAACATGAAT
* * * * * *
3460873 TCTAGTAATGATCTTCATTCATTTTGTGATTTGGTACTATAAACACATTCTCCTCATTAAGATAA
1 TCTAGTAATGATCTCCATTC-TTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATAC
* * * * ** * ** * * * * *
3460938 ATGATTTTGAAGATTTTCTTTTGCTTTG-AAATCTTTTCTTTGCC-TTATTTTCCT-TAAAATCA
65 ATCATATTGATGCTTTGGTTTCGC-AAGAAAAGC-TTT-TTTCCCATAATTTT--TGTAAAGTCT
** *
3461000 AAGTTAATCCCTTAAGTAAGACAAGA-ATCG-AT
125 AAGTTTGT-CCTTAAATAAGACAA-ACAT-GAAT
* * ** * * * **
3461032 TCTCA-TAACAGTATCT--ACTCTTTTCAAGATTGGGAAAC-CAAAATGCATTC-CCTTCATTAG
1 TCT-AGTAA-TG-ATCTCCATTCTTTT-GTGATTAGG-CACTAAAAACACATTCTCC-TCATTAG
* * * * * * ***
3461092 GAAAAATGATGTTGATACTTTGGTGTT-GCAAGAAAAGCTTTTCTTTCCACCTTTTTTGATAGAA
60 GATACATCATATTGATGCTTTGGT-TTCGCAAGAAAAGCTTTT-TTCCCATAATTTTTG-TA-AA
* *
3461156 -TCAAAGTTTGTCTCTTAAATAAGGCAAACATGAAT
121 GTCTAAGTTTGTC-CTTAAATAAGACAAACATGAAT
* * * * * * *
3461191 AGTC-A-TACTAATCCCCATTCTTTTCAG-GATTAGGCAGC-ATAAACATAGTCTTCTCATTAGG
1 --TCTAGTAATGATCTCCATTCTTTT--GTGATTAGGCA-CTAAAAACACATTCTCCTCATTAGG
* * * * *** * *
3461252 ATACA-CGATGTTAATGCTTTGGTTTCACAAGAAAGGCTTTCCCCCCACCAAGTTTTGTAAAGTC
61 ATACATC-ATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTTTCCCA-TAATTTTTGTAAAGTC
* * * * *
3461316 TAAGTTCGTGCCTCAAATGAGACAAACACCG-AC
124 TAAGTTTGT-CCTTAAATAAGACAAACA-TGAAT
* * *
3461349 TCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTACAAACACATTCTCCTCATTAGGATAT
1 TCTAGTAATGATCTCCATTC-TTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATAC
* * * ** * ** * * *
3461414 ATGATAATGATGATTTTCTTTTGCTTGGAAATCTTTTATTTGCCC-T-ATTTTCCT-TAAAATCT
65 ATCATATTGATGCTTTGGTTTCGCAAGAAAAGC-TTT-TTT-CCCATAATTTT--TGTAAAGTCT
* ** * *
3461476 AAGCTCATCCCATAAATAAGACAAGCATCG-AT
125 AAGTTTGT-CCTTAAATAAGACAAACAT-GAAT
* * * * * * *
3461508 TCTTGCAA-CAGTCTCCATTCTTTTCATGATT-GGGAGCTGAAGAACACATTC-CCTTCATTAGC
1 TCTAGTAATGA-TCTCCATTCTTTT-GTGATTAGGCA-CT-AAAAACACATTCTCC-TCATTAGG
* * * * * * * * ** * ***
3461570 ATGCATGACATTGATGCTTTGGTGTCGTATGAAAAGATTTTCTTTCCACCACTTTTGTTTTGATC
61 ATACATCATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTT-TTCCCATAATTTTTGTAAAG-TC
* * *
3461635 CAAGTTTGTCTCATAAATAAGACAAACAAGAAT
124 TAAGTTTGTC-CTTAAATAAGACAAACATGAAT
* * * *** * * * *** * * *
3461668 ACTCA-TACTAATCGGTATTGTTTT-TAGGATTAGGCACCATAAACATGGTCTTCTAATAAGGAT
1 TCT-AGTAATGATCTCCATTCTTTTGT--GATTAGGCACTAAAAACACATTCTCCTCATTAGGAT
* * * **
3461731 ATATCATACTCATGCTTTGGTTTCGCAAGAATTGC-TTTTTCCCACTAATTTTCT-TAAAGTCTA
63 ACATCATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTTTCCCA-TAATTTT-TGTAAAGTCTA
* * * * *
3461794 AGTTCGTGCCTCAAATGAGACGAACATAGACT
126 AGTTTGT-CCTTAAATAAGACAAACAT-GAAT
* * * * * * *
3461826 T-TAGCAATGATCTTCATTCATTTTGTGATTAGACACTATAAACACATTATCCACATTAGGATAA
1 TCTAGTAATGATCTCCATTC-TTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATAC
* * ** * ** *
3461890 ATGAT-TTGGACGACTTTCATTT-GCATAG-AAATCTTTTTTTTGCCC-T-ATTTTCCCTAAAAT
65 ATCATATT-GATG-CTTTGGTTTCGCA-AGAAAAGC--TTTTTT-CCCATAATTTT-TGTAAAGT
* * * *
3461950 CAAAGTTCAT-TCCTTAAAAAATACAAGCATCG-AT
123 CTAAGTT--TGTCCTTAAATAAGACAAACAT-GAAT
* * ** * * * *
3461984 TCTTGTAAT-AGTTTCCATTCTTTTCAAGATTGGGAAGC-CAAAACACATTC-CGTTCATTAGGA
1 TCTAGTAATGA-TCTCCATTCTTTT-GTGATTAGGCA-CTAAAAACACATTCTC-CTCATTAGGA
* ** * * * * * ***
3462046 TGCAGGATGTTGATGCTTTGGTGTCACAGGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAA-TC
62 TACATCATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTT-TTCCCATAATTTTTG-TA-AAGTC
* *
3462110 AAAGTTTGTCTCTTAAATAAGACAAACATGAAA
124 TAAGTTTGTC-CTTAAATAAGACAAACATGAAT
* ** * * * ** * * * * * * *
3462143 ACTCTTACTAATCCCCATTCTTTTCAAGATTATGTAGC-ATAAACATAGTATTCTCATTAGGATA
1 TCTAGTAATGATCTCCATTCTTTT-GTGATTAGGCA-CTAAAAACACATTCTCCTCATTAGGATA
* * ** *
3462207 CAGCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTT-CTTTGCAATTTTTGTAAAGCCTAA
64 CATCATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTTTCCCAT--AATTTTTGTAAAGTCTAA
* * * *
3462271 GTTTG-CGGCTCAATTGAGACAAACA-AAGAT
127 GTTTGTC--CTTAAATAAGACAAACATGA-AT
* ** *
3462301 TCTAGTAATGATCTTCATTCATTTTGCAATTAGGCA-TCATAAACACATT-TCCCTCATTAGGAT
1 TCTAGTAATGATCTCCATTC-TTTTGTGATTAGGCACT-AAAAACACATTCT-CCTCATTAGGAT
* * * * * ** * * *
3462364 AAATGATACTGAAGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCC-T-ATTCTCCTT-TAAA-
63 ACATCATATTGATGCTTTGGTTTCGCAAGAAAAGC-TTT-TTT-CCCATAATT-T--TTGTAAAG
* ** * *
3462425 TCAAAGTTCATACCTTAAATAAGACAAGCATCAAT
122 TCTAAGTTTGT-CCTTAAATAAGACAAACATGAAT
* * * * * * * *
3462460 TATCGTAAT-AGTCTCCATTCTTTTCATGATTGGGAACCAGAAAAGACATTC-CCTTCATTAGTA
1 TCTAGTAATGA-TCTCCATTCTTTT-GTGATTAGGCACTA-AAAACACATTCTCC-TCATTAGGA
** * * * * * *
3462523 CGCATGACATTGATGCTTTGGTGTCGCAAGAAATGCTTCTCTTT-CTACT-GTTTTTGTTATAA-
62 TACATCATATTGATGCTTTGGTTTCGCAAGAAAAGCTT-T-TTTCCCA-TAATTTTTG-TA-AAG
* **
3462585 TCAAAGTTTGTCTCTTAAATAAGACAAACAACAAT
122 TCTAAGTTTGTC-CTTAAATAAGACAAACATGAAT
* ** * * ** * * * * *
3462620 ACTTTTACT-AGTCCCCATTCTTTTCAAGATTAGGCACCACAAACATAGTT-TTCACATTAGGAT
1 TCTAGTAATGA-TCTCCATTCTTTT-GTGATTAGGCACTAAAAACACA-TTCTCCTCATTAGGAT
* *
3462683 ACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACTAATTTTCGTAAAGTCTAA
63 ACATCATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTTTCCCA-TAATTTTTGTAAAGTCTAA
* * * * *
3462748 GTTTATGCCTCAAATGACACAAACATGGAT
127 GTTTGT-CCTTAAATAAGACAAACATGAAT
* * * *
3462778 TCTAGTAATGATATTCATTCGTTTTGTGATTAGGCACTATAAACATATTCTCCTCATTAGGATA-
1 TCTAGTAATGATCTCCATTC-TTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATAC
*
3462842 AACGATATTGATG
65 ATC-ATATTGATG
3462855 ATTTTTTTTT
Statistics
Matches: 5554, Mismatches: 1829, Indels: 1248
0.64 0.21 0.14
Matches are distributed among these distances:
153 4 0.00
154 15 0.00
155 100 0.02
156 99 0.02
157 447 0.08
158 1723 0.31
159 2176 0.39
160 813 0.15
161 155 0.03
162 12 0.00
163 6 0.00
164 4 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (155 bp):
TCTAGTAATGATCTCCATTCTTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATACA
TCATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTTTCCCATAATTTTTGTAAAGTCTAAGTTT
GTCCTTAAATAAGACAAACATGAAT
Found at i:3456635 original size:953 final size:952
Alignment explanation
Indices: 3454632--3463459 Score: 10318
Period size: 953 Copynumber: 9.3 Consensus size: 952
3454622 ATCTTTTTTC
* ** * * ** * * *
3454632 TTTTCCCACAAATTTTCCTAAAGTCTATGTCCATGCCTCAAATGAGATGAACGTAGAGTCTAGTA
1 TTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTA
* *
3454697 ATGATCTCCATTCATTTTGTGATTAGGCACTATAAACACATTCCCCTCATTAGGATAAATGATAT
66 ATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATAT
* * * *
3454762 TGATGATTTT-TTTTGCATGGAACTCTTTTCTTTGCCCTATTTTCCTTTAAATAAAAGTTCATAC
131 TGATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTCCTTAAAATCAAAGTTCATAC
* * *
3454826 CTTAAATAAGACAAGCATCAATTATCGTAATAGTCTCCATTCGTTTCATGATTGGGAACCAAAAA
196 CTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCATGATTGGGAACCAAAAA
* * * * * *
3454891 AGACATTCCCTTCATTAGTACACACGACATTGATGCTTTGGTGTTGCAAGAAACGCTTCTCTTTC
261 ACACATTCCCTTCATTAGTACGCATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC
* *
3454956 CACCGTTTTTGTTATAATCAAAG-TTGTCTCTTAAATAACACAAACAAGAATACTCTTACTAAT-
326 CACCGTTTTTGTTATAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTCATACTAATC
* *
3455019 CCCATTCTTTTCAGGATTATGCACCACAAACATAGTCTTCACATTAGGATACATCATATTGATGC
391 CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCACATTAGGATACATCATATTGATGC
* * * * *
3455084 TTTGGTTTCGCAA-TATAGGCTTTTTTCCCACAAATTTTTGTAAAGTCTGAGTTTGTGCCTTAAA
456 TTTGGTTTCGCAAGAAT-GGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAA
*
3455148 TGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACA-T
520 TGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
* * *
3455212 CTCCTCATTAGGATAAATGATATTGATGACTTTCTTTTGCGTGAAAATTTTTTCA-TTGCCCTAT
585 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTT-ATTTGCCCTAT
* * *
3455276 TTTCCTTAAAAT-ATAAGTT-AGTCTCTTAAAAAAGACAAGCATCAATTCTCATAATAGTCTCCA
649 TTTCCTTAAAATCA-AAGTTCA-TCCCTTAAAAAAGACAAGCATCGATTCTCATAATAGTCTCTA
* * * * * *
3455339 TTCTTTTCACGGTTAGGAACTAAAAACACATTCCCTTCGTCAGGATACATGACATTGATGCTTTG
712 TTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTG
* * * * * * *
3455404 ATGTCGCAAAAAAAGCTTTTCTTTCAATCGTTTTTAATAGAATCAAAGTTTGTCTCTTAAATACG
777 GTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
* * * * * * *
3455469 ACAAACATGAATACTCCAACTGATCCTCGTT-TCTTTCAGGATTAGGCACCAAAAATATAGCCTT
842 ACAAACATGAATACTCCATCTAATCCCCATTCT-TTTCAGGATTAGGCACCATAAACATAGTCTT
* * * * * *
3455533 CACTTTAGCAGACACGATATTGTTGTTTCGGTTTTGCAAGAAAAG-TAT
906 CACATTAGGATACACGATATTGATGTTT-GGTTTCGCAAGAAAGGCT-T
* * * * *
3455581 TTTTCCCACCAATTTTTGTTAAGTTTAAGTTCAAGCGTCAAATGAGACAAACATGGATTCTAGTT
1 TTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTA
* * * * * *
3455646 TTAATCTTCAATCACTTTCTGATAAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATAT
66 ATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATAT
*
3455711 TGATGATTTTCTTTTGTATGGAAATCTTTTATTTGCCCTATTTTCCTTAAAATCAAAGTTCATAC
131 TGATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTCCTTAAAATCAAAGTTCATAC
* *
3455776 CTTAAATAAGACAAGCATCAATTATCGTAATAGTCTCCATTCTTTTCATGATTGGGAACCAAAAA
196 CTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCATGATTGGGAACCAAAAA
* * * * *
3455841 AGACATTCTCTTCATTAGTACGCACGACATTGATGCTTTGGTGTCGCAAGAAACGCTTCTCTTTC
261 ACACATTCCCTTCATTAGTACGCATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC
* * *
3455906 CACCGTTTTTGTTATAATCAAAGTTTGTCTCTTAAATAACACAAACAAGAATACTCTTACAAATC
326 CACCGTTTTTGTTATAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTCATACTAATC
* *
3455971 CCCATTCTTTTTAGGATTAGGCACCACAAACATAGTCTTCACATTAGGATACATCATATTGATGC
391 CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCACATTAGGATACATCATATTGATGC
* ** *
3456036 TTTGGTTTCGCAAGAAAGGCTTTTTTCCCATAAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAAT
456 TTTGGTTTCGCAAGAATGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* *
3456101 GACACAAACATGGATTCTAGTAATGATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTC
521 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* * *
3456166 TCCTCATTAGGATAAATGATATTGATGACTTTCTTTTGCATGAAAATTTTTTCTTTGCCCTATTT
586 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTATTTGCCCTATTT
* ** *
3456231 TCCTTAAAATCTAAGTT-AGTCCCTTAAAAAAGACAAGCATCGATTCTTGTAATAGTCTCCATTC
651 TCCTTAAAATCAAAGTTCA-TCCCTTAAAAAAGACAAGCATCGATTCTCATAATAGTCTCTATTC
* * * * * *
3456295 TTTTCACGGTTAGGAACCAAAAACACATTCCCTTCGTCAGGATACATGACATTGATGCTTTGATG
715 TTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTG
* * *
3456360 TCGCAAGAAAAGCTTTTCTTTCCATCATTTTTAATAGAATCAAAGTTTGTCTCTTAAATACGACA
780 TCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
* * * * *
3456425 AACATGAATACTCCATCTAATCCCCGTTCTTTTTAGGATTAGGCACCAAAAATATAGTCTTCAAA
845 AACATGAATACTCCATCTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCACA
* * * * *
3456490 TTAGTAGACACGATATTGTTGTTTCGGTTTTGCAAGAAAAG-TAT
910 TTAGGATACACGATATTGATGTTT-GGTTTCGCAAGAAAGGCT-T
* * *
3456534 TTTTCCCACCAATTTTTGTTAAGT-TCAAGTTCAAGCGTCAAATGAGACAAACATGGATTCTAGT
1 TTTTCCCACCAATTTTTGTAAAGTCT-AAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGT
* * * *
3456598 ATTAATCTTC-TATCACTTTGTGATAAGGCACTATAAACACATTCTCCTCATTAGGATAAATGAT
65 AATGATCTTCAT-TCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGAT
*
3456662 ATTGATGATTTTCTTTTGTATGGAAATCTTTTATTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
129 ATTGATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
* * * **
3456727 ACCTTAAATAAGCCAAGCATCGATTCTCGCAATGGTCTTTATTCTTTTCATGATTGGGAACCAAA
194 ACCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCATGATTGGGAACCAAA
* * * * ***
3456792 AAGCACATACCCTTCATCAGTACGCAGGACATTGATGCTTTGGTGTTAAAAGAAAAGCTTTTCTT
259 AAACACATTCCCTTCATTAGTACGCATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT
* * * * * *
3456857 TCCACCGTTTTTGATAGAATCAAAGTTTCTCCCTAAAATAAGACGAACAAGAATACTCCA-ACTA
324 TCCACCGTTTTTGTTATAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACT-CATACTA
* * *
3456921 ATCCCCATTCCTTTCGGGATTA-GCTACCATAAACGTAGTCTTCACATTAGGATACA-CGATATT
388 ATCCCCATTCTTTTCAGGATTAGGC-ACCATAAACATAGTCTTCACATTAGGATACATC-ATATT
* * * * * *
3456984 GATGTTTTAGTTTCGCAGGACTGG-TATTTTTCCCACCAATTTTTGTGAAGTCTAAGTTCATGCC
451 GATGCTTTGGTTTCGCAAGAATGGCT-TTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCC
* *
3457048 TCAAATAAGACAAACATGGATTCTAGTAATGATCTTCATCCATTTTGTGATTAGGCACTATAAAC
515 TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAAC
* * * * ** * * *
3457113 AGATTCTCCTCGTTATGATCAACAATATTGATGATTTTTTTTTTCATGGAAATCTTTTATTTGCC
580 ACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTATTTGCC
* * * * * *
3457178 CGATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAA-ATAAGCATCGATTCTCACAATAGTCC
645 CTATTTTCCTTAAAATCAAAGTTCATCCCTTAAA-AAAGACAAGCATCGATTCTCATAATAGTCT
* * * * * * *** *
3457242 CCACTCTTTTCATGGTTGGGAACCAAAAACACATTCCTTTC-TTCAGTAGGGATTACATTGATGC
709 CTATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATT-AGGATACATGACATTGATGC
** * * **
3457306 TTTGGTGTCATAAGAAAAGCTTTTCTTTCCACCATTTCTGATAGAATCATAGTTTAACTCTTAAA
773 TTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAA
* * ** * *
3457371 TATGGCAAACATGAATACT-CATACTAATCCCTTTTCTTTTCAGGATTAGGCACCATAAAAATGG
838 TAAGACAAACATGAATACTCCAT-CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAG
* * * *
3457435 TCTTCTCATAAGGGTACATC-ATATTGATGCTTTGGTTTCGCAAGAATGGCTT
902 TCTTCACATTAGGATACA-CGATATTGATG-TTTGGTTTCGCAAGAAAGGCTT
* * ** **
3457487 ATTTCCCACCACTTTTCT-TAAAGTCTAAGTTTTTGCCTCAAATGAGATGAACATGGATTCTAGT
1 TTTTCCCACCAATTTT-TGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGT
* * * * *
3457551 AATGATCTCCGTTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAAGATAAATGATT
65 AATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
* * *
3457616 TTGATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTCCTCAAAATCTAAGTTCATC
130 TTGATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTCCTTAAAATCAAAGTTCATA
*
3457681 CCTTAAATAAGAC-A--ATCGATTCTCGTAACT-GT-TCCATTCTTTTCATGAATGGGAACCAAA
195 CCTTAAATAAGACAAGCATCGATTCTCGTAA-TAGTCTCCATTCTTTTCATGATTGGGAACCAAA
* * * * * * *
3457741 AATCACATT-CCATAATTAGTACACGTGACATTGATGCTTTGGTGTCACAAGAAAAGGTTTTCTT
259 AAACACATTCCCTTCATTAGTACGCATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT
* * * * * * *
3457805 TCCACCATTCTTATTACACTCAAAGTTTGTCTCATAAATATGACAAACAAGAATACTCATACTAA
324 TCCACCGTTTTTGTTATAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTCATACTAA
* * * * * * * *
3457870 TACCTATTCTTTTCAGGATTAGGCACCATAATCATGGTATTCTCATAAGGATACATCATATTGAA
389 TCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCACATTAGGATACATCATATTGAT
* * * * *
3457935 GCCTTAGTTTCGCAAGAATGGCTTATTTCCCACCAGTTTTCT-CAAAGTCTAAGTTCGTGCCTCA
454 GCTTTGGTTTCGCAAGAATGGCTTTTTTCCCACCAATTTT-TGTAAAGTCTAAGTTCGTGCCTCA
* ** * *
3457999 AATGAAATGAACATGAATTCTAGTAATGATCTTC-TATCATTTTGTGATTAGGCGCTATAAACAC
518 AATGAGACAAACATGGATTCTAGTAATGATCTTCAT-TCATTTTGTGATTAGGCACTATAAACAC
* * * *
3458063 ATTCTCCTTC-TTAGGATAAAAGATTTTGATGATTTTCTTTT-AAGTGGAAATCTTTTATTTGCC
582 ATTCTCC-TCATTAGGATAAATGATATTGATGATTTTCTTTTGCA-TGAAAATCTTTTATTTGCC
* * ** *
3458126 CTATTTTCCTTAAAATCTAAGTTCATCCCTTAAAAAAGGCAAGCATTAATTCTCATAACAGT-TC
645 CTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAGCATCGATTCTCATAATAGTCTC
* * * * *
3458190 TATTCTTTTCAAGATTGGGAAGCGAAAACACATTCCCCTCATTAGGATACCTGACAGTGATGCTT
710 TATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTT
** *
3458255 TGGTGTC-CTAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGAATGTCTCATAAAT
775 TGGTGTCGC-AAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* * * * * ** *
3458319 AAGACAAACAAGAATACTCCAACTAATCCTCATTCTTTTCAGGATGAGGCACCGTAAATGTTGTC
839 AAGACAAACATGAATACTCCATCTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTC
* *
3458384 TTCACATTAGGATACAC-ATTATTGTTGTTTTGGTTTCGCAAGAAAGGCAT
904 TTCACATTAGGATACACGA-TATTGATG-TTTGGTTTCGCAAGAAAGGCTT
* * *
3458434 TTTTCCCACCAATTTTTGTGAAGTATAACTTCATGCCTCAAATGAGACAAACATGGATTCTAGTA
1 TTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTA
* * *
3458499 ATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAAGATAAATGATTT
66 ATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATAT
* * *
3458564 TGATGATTTTCTTTTGCTTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCTAAGTTCAT-C
131 TGATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTCCTTAAAATCAAAGTTCATAC
* * *
3458628 TCTTAAATAAGACAAGCATCGATTCTCGCAACAGTCTCCATTCTTTTCATGATTAGGAACCAAAA
196 -CTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCATGATTGGGAACCAAAA
* ** * * *
3458693 AACACATTCCCTTCATTAGTTCAAATGACAGTGAAGCTTTGGTGTCACAAGAAAAGCTTTTCTTT
260 AACACATTCCCTTCATTAGTACGCATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT
* ** * * * *
3458758 CCACCATTTTTCATAAAATCAAAGTTTGTCCCTTAAATAAAACAAACAAGAATACACCA-ACTAA
325 CCACCGTTTTTGTTATAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATAC-TCATACTAA
* * **
3458822 ACCCCAATCTTTTCAGGATTAGGTGCCATAAACATAGTCTTCACATTAGGATACA-CGATATT-A
389 TCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCACATTAGGATACATC-ATATTGA
* * * * * * *
3458885 TTGTTTTGGTTTCACAAGAAAGGCATTTTTCCGACCAATATTTGTGAAGTCTAAGTTCGTGCCTC
453 -TGCTTTGGTTTCGCAAGAATGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTC
* * *
3458950 GAAA--AGACAAACCTAGATTCTAGTAATGATCTTCATTCATTTTGTAATTAGGCACTATAAACA
517 -AAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACA
* *
3459013 CATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTCTATTTGCCC
581 CATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTATTTGCCC
* * * * * * *
3459078 TATTTT-TTGTAAAATCAAAGTTAATACCTTAAATAAGATAAGTATTGATTCTCATAATAGTCTC
646 TATTTTCCT-TAAAATCAAAGTTCATCCCTTAAAAAAGACAAGCATCGATTCTCATAATAGTCTC
* * *
3459142 TATTCTTTTCAAGATTGGGAAGCC-AAAACACATTCCCCTCGTTACGATACATGACATTGATGCT
710 TATTCTTTTCAAGATTGGGAA-CCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * * *
3459206 TTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAACCATAGTTTATCTCCTAAAT
774 TTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* * ** * * * **
3459271 ACGACAAATATGAATACT-CATACTAATCCCTGTTCTTTTTAGGATTAGGCATCATAAAAAGGGT
839 AAGACAAACATGAATACTCCAT-CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGT
* * * *
3459335 CTTCTCATAAGGATACATC-ATATTGATGCTTTGGTTTCACAAGAATGGCTT
903 CTTCACATTAGGATACA-CGATATTGATG-TTTGGTTTCGCAAGAAAGGCTT
* * *
3459386 TTTTCCCACCAGTTTTTGTAAAGTCTAAGTTCATCCCTCAAATGAGACGAACATGGATTCTAGTA
1 TTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTA
3459451 ATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT-TCCCTCATTAGGATAAATGATA
66 ATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT-CCTCATTAGGATAAATGATA
* * * *
3459515 ATAATGATTTTTTTTTGCGTGGAAATCTTTTATTTGCCCTATTTTCCATT-AAATCAAAGTTCAT
130 TTGATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTCC-TTAAAATCAAAGTTCAT
* * * * * * * * * * *
3459579 ACCTTAATTAAGATAAGTATTGATTCTTGTAACAAT-TCTATTCTTTTCAAGATTGAGATGCC--
194 ACCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCATGATTGGGA-ACCAA
* * * * **
3459641 AAAACTCATTCCCCTCAGTAGGATACATGACATTGATGCTTTGGTG--GCAAGAAAAGCTTTTCT
258 AAAACACATTCCCTTCATTAGTACGCATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCT
* * * * * * *
3459704 TTCCACCGTTTATGATAGAATCATAGTTTGACTCTTAAATATGGA-AAACATGAATACTCATACT
323 TTCCACCGTTTTTGTTATAATCAAAGTTTGTCTCTTAAATA-AGACAAACAAGAATACTCATACT
** * * * * *
3459768 AATCCCTTTTCTTTTCAAGATTAGGCACCATAAAAATGGTCTTCTCATAAGGATACATCATATTG
387 AATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCACATTAGGATACATCATATTG
* * * *
3459833 ATGCTTTGGTTTCGCAAGAATGGCTTATTTCCCACCACTTTTCT-TAAAGTTTAAATTCGTGCCT
452 ATGCTTTGGTTTCGCAAGAATGGCTTTTTTCCCACCAATTTT-TGTAAAGTCTAAGTTCGTGCCT
* *
3459897 CAAATGAGACAAACATGGATTCTAGTAATGATCTTCAATCATTTTCTGATTAGGCACTATAAACA
516 CAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACA
* * *
3459962 CATTCTCCTTACTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCC
581 CATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTATTTGCCC
* * * * * *
3460027 TATTTTCCTTAAAATCTATGTTCATCCCTTAAATAGGACAAGCATCGATTCTCGTAACAGTCTCT
646 TATTTTCCTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAGCATCGATTCTCATAATAGTCTCT
* * * * *
3460092 ATTCTTTTCATGATTGGGAACCCAAAAGCACATTCCCTTTAATA-G-TACGTAGGACATTGATGC
711 ATTCTTTTCAAGATTGGGAA-CCAAAAACACATTCCCTTCATTAGGATAC--ATGACATTGATGC
*** * * * * * *
3460155 TTTGGTGTTAAAAAAAAAAGCTTTTCTTTCCATCATTTTTGATAGAAACAAAGTTTGCCCCTAAA
773 TTTGGTG-TCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAA
* * * * * *
3460220 ATAAGACAAACAAGAACACTCCAACTAATCCCTATTCTTTTCAAGATTAAGCACCATAAACATAG
837 ATAAGACAAACATGAATACTCCATCTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAG
** *
3460285 TCTTTCACATTAGGATACGTGATATTGATGTTTTGGTTTCGCAAGAAAGGCAT
902 TC-TTCACATTAGGATACACGATATTGATG-TTTGGTTTCGCAAGAAAGGCTT
* * * *
3460338 TTTTGCCAGCAATTTTTGTGAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTA
1 TTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTA
* * * * * * *
3460403 ATGATCTGCAATCATTTTGTGATTACGTACTATAAACACATTCTGCTCGTTAGGATAAACGATAT
66 ATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATAT
* * *
3460468 TTATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTAATTTCCTTTAAATCAAAGTTCATAC
131 TGATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTCCTTAAAATCAAAGTTCATAC
* ** *
3460533 CTTAAGTAAGACAAGCATCGATTCTCACAATAGTCTCCTTTCTTTTCATGATTGGGAACCAAAAA
196 CTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCATGATTGGGAACCAAAAA
* * * * * **
3460598 CCACGTTCCCTTCATTAGTACGGAAGGCATTGATGCTTTGGTGTCATAAGAAAAGCTTTTCTTTC
261 ACACATTCCCTTCATTAGTACGCATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC
* * * * * * ** * *
3460663 CACCGTTTCTGATAGAATCATAGTTTGACTCTTAAATACGGTAAACATGAATACTCATACTCATC
326 CACCGTTTTTGTTATAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTCATACTAATC
** * * * * *
3460728 CCTTTTCTTTTAAGGATTAGGCACCATAAAAATGGTCTTCTCATAAGGATACATCATATTGATGC
391 CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCACATTAGGATACATCATATTGATGC
* * *
3460793 TTTGGTTTCGCAAGAATGACTTATTTCCCACCAGTTTTCT-TAAAGTCTAAGTTCGTGCCTCAAA
456 TTTGGTTTCGCAAGAATGGCTTTTTTCCCACCAATTTT-TGTAAAGTCTAAGTTCGTGCCTCAAA
** * *
3460857 TGAGATGAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTTGGTACTATAAACACATT
520 TGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
* * * * * *
3460922 CTCCTCATTAAGATAAATGATTTTGAAGATTTTCTTTTGCTTTG-AAATCTTTTCTTTGCCTTAT
585 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGC-ATGAAAATCTTTTATTTGCCCTAT
* ** * * * *
3460986 TTTCCTTAAAATCAAAGTTAATCCCTTAAGTAAGACAAGAATCGATTCTCATAACAGTATCTACT
649 TTTCCTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAGCATCGATTCTCATAATAGTCTCTATT
** * * ** *
3461051 CTTTTCAAGATTGGGAAACC-AAAATGCATTCCCTTCATTAGGAAAAATGATGTTGATACTTTGG
714 CTTTTCAAGATTGGG-AACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGG
* * *
3461115 TGTTGCAAGAAAAGCTTTTCTTTCCACCTTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGG
778 TGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA
* *
3461180 CAAACATGAATAGT-CATACTAATCCCCATTCTTTTCAGGATTAGGCAGCATAAACATAGTCTTC
843 CAAACATGAATACTCCAT-CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTC
* * * *
3461244 TCATTAGGATACACGATGTTAATGCTTTGGTTTCACAAGAAAGGCTT
907 ACATTAGGATACACGATATTGATG-TTTGGTTTCGCAAGAAAGGCTT
*** * * ** *
3461291 TCCCCCCACCAAGTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACACCGACTCTAGTA
1 TTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTA
* * *
3461356 ATGATCTTCATTCATTTTGTGATTAGGCACTACAAACACATTCTCCTCATTAGGATATATGATAA
66 ATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATAT
* * * *
3461421 TGATGATTTTCTTTTGCTTGGAAATCTTTTATTTGCCCTATTTTCCTTAAAATCTAAGCTCATCC
131 TGATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTCCTTAAAATCAAAGTTCATAC
* * * * * ** *
3461486 CATAAATAAGACAAGCATCGATTCTTGCAACAGTCTCCATTCTTTTCATGATTGGGAGCTGAAGA
196 CTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCATGATTGGGAACCAAAAA
* * * * *
3461551 ACACATTCCCTTCATTAGCATGCATGACATTGATGCTTTGGTGTCGTATGAAAAGATTTTCTTTC
261 ACACATTCCCTTCATTAGTACGCATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC
** * * * *
3461616 CACCACTTTTGTTTTGATCCAAGTTTGTCTCATAAATAAGACAAACAAGAATACTCATACTAATC
326 CACCGTTTTTGTTATAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTCATACTAATC
*** * * * * * * *
3461681 GGTATTGTTTTTAGGATTAGGCACCATAAACATGGTCTTCTA-ATAAGGATATATCATACTCATG
391 CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTC-ACATTAGGATACATCATATTGATG
* *
3461745 CTTTGGTTTCGCAAGAATTGC-TTTTTCCCACTAATTTTCT-TAAAGTCTAAGTTCGTGCCTCAA
455 CTTTGGTTTCGCAAGAATGGCTTTTTTCCCACCAATTTT-TGTAAAGTCTAAGTTCGTGCCTCAA
* * * *
3461808 ATGAGACGAACATAGACTT-TAGCAATGATCTTCATTCATTTTGTGATTAGACACTATAAACACA
519 ATGAGACAAACATGGA-TTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACA
* * * * * *
3461872 TTATCCACATTAGGATAAATGAT-TTGGACGACTTTCATTTGCAT-AGAAATCTTTTTTTTGCCC
583 TTCTCCTCATTAGGATAAATGATATT-GATGATTTTCTTTTGCATGA-AAATCTTTTATTTGCCC
* * * ** * *
3461935 TATTTTCCCTAAAATCAAAGTTCATTCCTTAAAAAATACAAGCATCGATTCTTGTAATAGTTTCC
646 TATTTTCCTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAGCATCGATTCTCATAATAGTCTCT
* * * **
3462000 ATTCTTTTCAAGATTGGGAAGCC-AAAACACATTCCGTTCATTAGGATGCAGGATGTTGATGCTT
711 ATTCTTTTCAAGATTGGGAA-CCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTT
* * *
3462064 TGGTGTCACAGGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
775 TGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * * * * * *
3462129 AGACAAACATGAAAACT-CTTACTAATCCCCATTCTTTTCAAGATTATGTAGCATAAACATAGTA
840 AGACAAACATGAATACTCCAT-CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTC
*
3462193 TTCTCATTAGGATACA-GCATATTGATGCTTTGGTTTCGCAAGAAAGGCTT
904 TTCACATTAGGATACACG-ATATTGATG-TTTGGTTTCGCAAGAAAGGCTT
**** * * **
3462243 TTTTCTTTGCAATTTTTGTAAAGCCTAAGTT--TGCGGCTCAATTGAGACAAACAAAGATTCTAG
1 TTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC--CTCAAATGAGACAAACATGGATTCTAG
**
3462306 TAATGATCTTCATTCATTTTGCAATTAGGCA-TCATAAACACATT-TCCCTCATTAGGATAAATG
64 TAATGATCTTCATTCATTTTGTGATTAGGCACT-ATAAACACATTCT-CCTCATTAGGATAAATG
* * * * * *
3462369 ATACTGAAGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTCTCCTTTAAATCAAAGTTC
127 ATATTGATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTCCTTAAAATCAAAGTTC
* *
3462434 ATACCTTAAATAAGACAAGCATCAATTATCGTAATAGTCTCCATTCTTTTCATGATTGGGAACCA
192 ATACCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCATGATTGGGAACCA
* * * *
3462499 GAAAAGACATTCCCTTCATTAGTACGCATGACATTGATGCTTTGGTGTCGCAAGAAATGCTTCTC
257 AAAAACACATTCCCTTCATTAGTACGCATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTC
* * * **
3462564 TTTCTACTGTTTTTGTTATAATCAAAGTTTGTCTCTTAAATAAGACAAACAACAATACTTTTACT
322 TTTCCACCGTTTTTGTTATAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTCATACT
* * * *
3462629 AGTCCCCATTCTTTTCAAGATTAGGCACCACAAACATAGTTTTCACATTAGGATACATCATATTG
387 AATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCACATTAGGATACATCATATTG
* * * **
3462694 ATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACTAATTTTCGTAAAGTCTAAGTTTATGCCTC
452 ATGCTTTGGTTTCGCAAGAATGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTC
* * * *
3462759 AAATGACACAAACATGGATTCTAGTAATGATATTCATTCGTTTTGTGATTAGGCACTATAAACAT
517 AAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACAC
* * * *
3462824 ATTCTCCTCATTAGGATAAACGATATTGATGATTTTTTTTTACATGGAAATCTTTTATTTGCCCT
582 ATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTATTTGCCCT
* * ** * * * * ** *
3462889 ATTTTCCTTTAAATAAAAGTTCATAACTTTAATAAGATAAACATCGATTCTCGCAACAGTCTCTA
647 ATTTTCCTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAGCATCGATTCTCATAATAGTCTCTA
* * * * *
3462954 TTCTTTTCATGATTGGGAA-CAAAAAAACACTTACCCTTCATTAGTATTCAGGACATTGA--C--
712 TTCTTTTCAAGATTGGGAACCAAAAACACA-TT-CCCTTCATTAGGATACATGACATTGATGCTT
* * *
3463014 ----G-C-AAAGAAAAGCTTTTC-TTCCACCATTTTTGATAGAATCAAAGTTTGTCCCCTAAATA
775 TGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * * ** * *
3463072 AGACAAACAAGAATTCTCCAACTAATCCTTATTCTTTTCAGGATTAGGCACCGTAAACATAGCCT
840 AGACAAACATGAATACTCCATCTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCT
** * *
3463137 TCACATTAACATACACGATATTGTTGTTTTGGTTTCGCAAGAAAAGCTT
905 TCACATTAGGATACACGATATTGATG-TTTGGTTTCGCAAGAAAGGCTT
* * *
3463186 TTTTCCCACCTATTTTTGTTAAGTCTAAGTTCATGCCTCAAATGAAACAAACATGGATTCTAGTA
1 TTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTA
* * * * * *
3463251 TTAATCTTTATTCATTTTGTGATTACGCACTACAAACGCATT-TCCCTCATTAGGATAAATGATA
66 ATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT-CCTCATTAGGATAAATGATA
* * * *
3463315 ATAATGATTTTCTTTTGCATGGAAA-CTTTTATTTGCCCTATTTTCCTTTAAATCAAAATTCATA
130 TTGATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTCCTTAAAATCAAAGTTCATA
* ** *
3463379 CCTTAATTAAGACAAGCATCGATTCTCG-AAGCTA-T-TATATTCTTTTCAAGATTGGGAAGCC-
195 CCTTAAATAAGACAAGCATCGATTCTCGTAA--TAGTCTCCATTCTTTTCATGATTGGGAA-CCA
3463440 -AAAACACATTCCCTTCATTA
257 AAAAACACATTCCCTTCATTA
3463460 AGATGCTAGA
Statistics
Matches: 6784, Mismatches: 975, Indels: 249
0.85 0.12 0.03
Matches are distributed among these distances:
940 19 0.00
941 22 0.00
942 64 0.01
943 254 0.04
944 16 0.00
945 4 0.00
946 5 0.00
947 394 0.06
948 523 0.08
949 348 0.05
950 306 0.05
951 358 0.05
952 1847 0.27
953 2028 0.30
954 174 0.03
955 32 0.00
956 385 0.06
957 5 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (952 bp):
TTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTA
ATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATAT
TGATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTCCTTAAAATCAAAGTTCATAC
CTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCATGATTGGGAACCAAAAA
ACACATTCCCTTCATTAGTACGCATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC
CACCGTTTTTGTTATAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTCATACTAATC
CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCACATTAGGATACATCATATTGATGC
TTTGGTTTCGCAAGAATGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTATTTGCCCTATTT
TCCTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAGCATCGATTCTCATAATAGTCTCTATTCT
TTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGT
CGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
ACATGAATACTCCATCTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCACAT
TAGGATACACGATATTGATGTTTGGTTTCGCAAGAAAGGCTT
Found at i:3460302 original size:952 final size:947
Alignment explanation
Indices: 3441269--3447827 Score: 6574
Period size: 951 Copynumber: 6.9 Consensus size: 947
3441259 ATTAGGCACT
* * ** * *
3441269 ATAAATGATTTTGATTATTTT-TTTTAAAATGAAAATCTTTTTTTTGCCCTATTTTCCTTAAAAT
1 ATAAATGATATTGATGATTTTCTTTT-GCATGGAAATCTTTTATTTGCCCTATTTTCCTT-AAAT
* * * * * * *
3441333 CTATGTTCGT-CCATTAAAAAAGACAAGCATCGATTCTCGTAACTGT-TCTATTCTTTTCAAGAT
64 CAAAGTTCATACC-TTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCATGAT
* * *
3441396 TGGGAAGCC-AAAACACATTCCCCTT-ATTAGGATACATGACATTGATGCTTTAGTGTCGCAAGA
128 TGGGAA-CCAAAAACACATT-CCCTTCATTAGTACACATGACATTGATGCTTTGGTGT-GCAAGA
*
3441459 AAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATTCAA-A-AAACAAG
190 AAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAA-T-AAGACAAACAAG
* * * * * *
3441522 AATACTCATACTAATCCTCTTTCTTTTCAGGATTAGGCAACATAAAGATTGTTTTCACATTAGGA
253 AATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCACATTAGGA
** * * * * * *
3441587 TACA-CATTATTCTTGTTTTGGTTTCGCAAGAAAGGCATTTTTCCGACCAATTTT-TGTGAAGTA
318 TACATCA-TATTGATGCTTTGGTTTCGCAAGAATGGCTTTTTTCCCACCAATTTTCT-TAAAGTC
* * * *
3441650 TAAGCTCGTGCCTCAAATGAAACAAAAATGGATTCTAGTAATGATCTTCATTCATTTTGTGATAA
381 TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTA
* * * * * * *
3441715 GGCACTGTAAGCGCATTCTCCTTATTAGGATAAATGATTTTGATGATTTTTTTTTGCTTGGAAAT
446 GGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAAT
* * * ** * * *
3441780 CTTTTCTTTGCCCTATTTTCCTTAAGATCTAAGTTCATGTCTTAAATAAGGCAAGTATCAATTCT
511 CTTTTATTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCT
** * * ** * * * *
3441845 CGCAACAGTTTCCGTTATTTTCATGATTAGGAACCAAAAAACACATTCCCTTCATTAGTACGCAT
576 CATAATAGTCTCTATTCTTTTCAAGATTGGGAACC-AAAAACACATTCCCTTTATTAGTA--CAT
* * * * * *
3441910 GACATTGAAGCTTTGGTGTCGCTAGAAAAGC-TTTCTTTCCATCGTTTTTGATAAAATCAAAATT
638 GACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTT
* * * * * *
3441974 TGTCTCTTAAATAAAACAAATAAGAATACTCCAACTAAACCCCATTCTTTT-ATGGATTGGGCAC
703 TGTCTCTTAAATAAGACAAACATGAATACTCCAACTAATCCCTATTCTTTTCA-GGATTAGGCAC
* * * * * *
3442038 TATAAACATAGTCTTCACATTAGGATACATGATATTGTTGTTTTGGTTTTGCAAGAAAGGCATTT
767 CATAAACATAGTCTTCACATTAGGATACA-CATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTT
** * * *
3442103 TTCCCACCAATTTTTGCGAAGTCTAAGTTCGTGCCTCAAATGAGACAAACCTAGATTCTAGTAAT
831 TTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAAT
* *
3442168 GATCTGCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCGTTAGG
896 GATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGG
* *
3442220 ATAAATGATATTGATGATTATCTTTTGCATAGAAATCTTTTATTTGCCCTATTTTCCTTTAAATC
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTCC-TTAAATC
* * * * * *
3442285 AAAGTTTATACCTTAAATAGGACAAGCATCGACTCTCATAACAGTCTCCATTCTTTTAATGGTTG
65 AAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCATGATTG
** *
3442350 GGAACCAAAAACACATTCCCTTCATTAGTACGGATGACATTGATGCTTTGGTGCTACAAGAAAAG
130 GGAACCAAAAACACATTCCCTTCATTAGTACACATGACATTGATGCTTTGGTG-TGCAAGAAAAG
* * * * * *
3442415 CTCTTCTTTCCACCATTTTTG-TTGTAATAAAAGTTTGCCT-TATAAATAAGACAAATAAGAATA
194 CTTTTCTTTCCACCGTTTTTGATAG-AATCAAAGTTTGTCTCT-TAAATAAGACAAACAAGAATA
* * * * * * *
3442478 --CATGCTAATCCCTATTCTTTTCAGGATTAGGCACCCTAAACATGGTCTTCTCATAAGCATACA
257 CTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCACATTAGGATACA
* *
3442541 TCATATTGATGCTTTGGTTTTGCAAGAATGGCTTTTTTCCCTCCAATTTTCTTAAAG-CTTAA-T
322 TCATATTGATGCTTTGGTTTCGCAAGAATGGCTTTTTTCCCACCAATTTTCTTAAAGTC-TAAGT
* * * * * *
3442604 CCGTGCCTCAAATAAGACGAACATAGATT-TCAGGAATGATCTTTATTCATTTTGTGATTAGGCA
386 TCGTGCCTCAAATGAGACAAACATGGATTCT-AGTAATGATCTTCATTCATTTTGTGATTAGGCA
* * *
3442668 TTATAAACACATTC-CTCTCATTAGGATAAATGATAATGATGATTTT-TTTT-CATGGAAATCAT
450 CTATAAACACATTCTC-CTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTT
* * * * * *
3442730 ATATTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTGAATAAGACAAGCATCAATTCTCAC
514 TTATTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCAT
* * * * * *
3442795 AACAGTGTCCATTCTTTTCATGGTTGGGAACCAAAAAACACATTCCCTTCATTAGTACGGATGAC
579 AATAGTCTCTATTCTTTTCAAGATTGGGAACC-AAAAACACATTCCCTTTATTAGTAC--ATGAC
* * ** * *
3442860 AATGATGCTTTGGTGTCGCAAGAAAAGCTCTTCTTTCCACTGTTTTTGATAGAGTCAAAGTTTAT
641 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGT
* * * *
3442925 CCCTTAAATAAGACAAACAAGAATACTCCAACTAATCCCCATTCTTTTCAGGATTAGGCACCATT
706 CTCTTAAATAAGACAAACATGAATACTCCAACTAATCCCTATTCTTTTCAGGATTAGGCACCATA
* * * * * *
3442990 AACATAGTCTTCACATTAGGATACATGATATTGTTGTTTTGGTTTTGTAAGAAAGGCATTTTTCC
771 AACATAGTCTTCACATTAGGATACA-CATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCC
* * * ** * * * **
3443055 CACTAGCTTTCT-TAAAGTCTAAGTTTGTTCCCCAATTGAGATGAACATGGATTCTAGTAATGA-
835 CACCA-ATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGAT
*
3443118 --TCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCGTTAGG
899 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGG
* * * *
3443165 ATAAATGATATTGATGATTTTCTTCTGCATGAAAATCTTTAATTTGCCCTATTTTTCTTTAAATC
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTA-TTTTCCTTAAATC
* * ** * * * *
3443230 AAAGTTCATACTTTAAATAAGACAATG-ATCAATTCTCACAACAATTTCTATTTTTTTCATGATT
65 AAAGTTCATACCTTAAATAAGACAA-GCATCGATTCTCGTAACAGTCTCCATTCTTTTCATGATT
* * * *
3443294 GGGAACCAAAAAACATATTCCCTTCATTAGTACGCATGACATTGGTGCTTCGGTGTTGCAAGAAA
129 GGGAACC-AAAAACACATTCCCTTCATTAGTACACATGACATTGATGCTTTGGTG-TGCAAGAAA
* ** * * * *
3443359 AGCTTTTCTTTCTACTATTTTTCATAGAGTCAAAGTTTGTCCCTTAAAAAAAGACAAACAAGAAT
192 AGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTT-AAATAAGACAAACAAGAAT
* * *
3443424 ACTCCA-GCTAATCCCCATTCTTTTTAGGATTAGGCACCATAAAGATAGTCTTCACATTAGGATA
256 ACT-CATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCACATTAGGATA
* * * * * * *
3443488 CA-CGATATTGTTGTTTTGGTTTCGCAAGGAA-AGCATTTCTGCCACCAATTTT-TGTAGAGTCT
320 CATC-ATATTGATGCTTTGGTTTCGCAA-GAATGGCTTTTTTCCCACCAATTTTCT-TAAAGTCT
* *
3443550 TAGTTCGTGCCTCAAACGAGACAAA-ACTGGATTCTAGTAATGATCCTT-ATTCATTTTGTGATT
382 AAGTTCGTGCCTCAAATGAGACAAACA-TGGATTCTAGTAATGAT-CTTCATTCATTTTGTGATT
* * * * **
3443613 AGGAACCATAAACAGATTCTCCTCATTAGGATAATTGATATTGATGATTTTCTTTTGCATTAAAA
445 AGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAA
* * ** * *
3443678 TCTTTTATTTGCCCT-TTTTTCTGTTAAATCAAAGTTCATATCTTAATTAAGATAAGCATCGATT
510 TCTTTTATTTGCCCTATTTTCCT-TAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATT
* * * * * *
3443742 CTCGTAACAGTCTCTATTCTTTTCAAGATTGGGAAGGC-AAAATACATTCCCCTCATTAAGATAC
574 CTCATAATAGTCTCTATTCTTTTCAAGATTGGGAA-CCAAAAACACATTCCCTTTATT-AG-TAC
* * * * *
3443806 ATGACCTTGATGCTTGGGTGTCGCAAGCAAAGCTTTTCTTTCCACCATTTTTTATAGAATCATAG
636 ATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAG
* * * * *
3443871 TTTGTCTCCTAAATACGAAAAACATGAATACT-CACACTTATCCCTATTCATTTT-AGGATTAAG
701 TTTGTCTCTTAAATAAGACAAACATGAATACTCCA-ACTAATCCCTATTC-TTTTCAGGATTAGG
* * * * * * * *
3443934 CACCATAAAAATGGTCTTCTCATAAGGATACATTATATTGATGCTTTGGTTTCACAAGAATGG-A
764 CACCATAAACATAGTCTTCACATTAGGATACA-CATATTGATGCTTTGGTTTCGCAAGAAAGGCT
* * * * * ** * *
3443998 TTTTTCCCACTAGTTTTCT-TGAAGTCTAAGATCATACCTCAAATGAGATGAACTTGGATTGTAG
828 TTTTTCCCACCAATTTT-TGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAG
* * * * * *
3444062 AAATGATCTTCATTCTTTTTGGGATTAGGCACTATAAACGCATTCCCCCCATTAGG
892 TAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGG
* * * *
3444118 ATAAAGGATACTGATGTTTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTCCCATAAATC
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTT-CCTTAAATC
* * * * *
3444183 AAAGTTTATACCTTAAATAAGACTAGCTTCGATTCTCGTAACTA-T-TCTATTCTTTTCAAGATT
65 AAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAAC-AGTCTCCATTCTTTTCATGATT
* * * *
3444246 GGGAAGCC--AAACACATTCCCCTCATTAAG-ATACATGACATTGACGCTTCGGTGTCGCAAGAA
129 GGGAA-CCAAAAACACATTCCCTTCATT-AGTACACATGACATTGATGCTTTGGTGT-GCAAGAA
* * * *
3444308 AAGCTTTTCTTTCCTCCGTTTTTGTTAGAATCAAAGTTTGTCTCTTTAATTCA-ACAAACAAGAA
191 AAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTC-TTAAATAAGACAAACAAGAA
* * * *
3444372 TACTTCA-ACTAAACCCCATTTTTTTCGGGATTAGGCACCATAAACATAGTGTTCACATTAGGAT
255 TAC-TCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCACATTAGGAT
* * * * * * * * * *
3444436 AC-TAGATATTGTTGTTTTGGTTTCGGAAGAAAGGCATTTTTCCCGCCAATATTT-GTGAAGTCC
319 ACAT-CATATTGATGCTTTGGTTTCGCAAGAATGGCTTTTTTCCCACCAAT-TTTCTTAAAGTCT
* * * * *
3444499 AAGTTCGTTCCTTGAAA--AGACAAACCTGGATTCTAGTAATGAGCTTCGTTCATTTTGTGATTA
382 AAGTTCGTGCC-TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTA
* * * * **
3444562 GGCACAAT-AACACATTATCCTCATTCGGATAAATGATATTGATGATTTTCTTTTACATAAAAAT
446 GGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAAT
* *
3444626 CTTTTATTTGCCCTATTTTCCATT-AAATCAAAGTTCATACCTTAAATAAGACAAGCATCAATTC
511 CTTTTATTTGCCCTATTTTCC-TTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTC
* * * * * * *
3444690 TCGTAACAATCTCTATTCTTATCAAGATTGGAAAGCC-AAAACACATTCCCCTTGTTAAGGTACA
575 TCATAATAGTCTCTATTCTTTTCAAGATTGGGAA-CCAAAAACACATTCCCTTTATT-A-GTACA
* ** * * * ** * *
3444754 TTACATTGATGCTTTGAAGTTGCAAGAAAAGCCTTTCTTTTCACTGTTTTTGATAGAATGATAGT
637 TGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGT
* * * * * *
3444819 TTATCTCCTAAATACGACAAACATAAACTACT-CACACTAATCCCTGTTCTTTTTAGGATTAGGC
702 TTGTCTCTTAAATAAGACAAACATGAA-TACTCCA-ACTAATCCCTATTCTTTTCAGGATTAGGC
* ** * * * *
3444883 ACCATAAAAAGGGTCTTCTCATAAGGATACATCATATCGATGCTTTGGTTTCGCAAGAATGGCTT
765 ACCATAAACATAGTCTTCACATTAGGATACA-CATATTGATGCTTTGGTTTCGCAAGAAAGGCTT
* * * * **
3444948 TTTTCCCACCAGTTTTCT-TAAGGTCTAAGTTCAGGCCT-TAATGAGATGAACATGGATTCTAGT
829 TTTTCCCACCAATTTT-TGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGT
* * * * *
3445011 AATGACCTTCATTCATTTTTTGATTAGGCACTATAAACACA-TCCCCTCAATAGC
893 AATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGG
* *
3445065 ATAAATGATGA-T-ATTGATTTTCTTTTGCGTGGAAATCTTTTATTTACCCTATTTTCCTTTAAA
1 ATAAATGAT-ATTGA-TGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTCC-TTAAA
* * ** * *
3445128 TCAAAGTTCATACCTTAATTAAGACAAACATAAATTCTCGTAACAGT-TCTATTCTTTTCAAGAT
63 TCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCATGAT
* * * *
3445192 TGGGATGCC-AAAACACATTTCCC-TCATTAGGATACATGACATTGATGTTTTGGTGT-CAAGAA
128 TGGGA-ACCAAAAACACA-TTCCCTTCATTAGTACACATGACATTGATGCTTTGGTGTGCAAGAA
* * ** *
3445254 AAGCTTTTCTTTCTACCGTTTTTGATAGAATCATAGTTTAACTCTTAAATACA-ACAAACATGAA
191 AAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA-AGACAAACAAGAA
** * * *
3445318 TACTCATACTAATCCCTTTTCTTTTCAGGATTAGGCACCATAAAAATGGTCTTCTA-ATAAGGAT
255 TACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTC-ACATTAGGAT
* * ** * * *
3445382 ACATCTTATTGATGCCTTGGTTTAACAAGATTGGCTTATTTCCCACCAGTTTTCTTAAAGTCTAA
319 ACATCATATTGATGCTTTGGTTTCGCAAGAATGGCTTTTTTCCCACCAATTTTCTTAAAGTCTAA
* * * *
3445447 GTCCGTGCCTCAAAAGAGACGAACATGGATTCTAGTAATGATCTCCATTCATTTTGTGATTAGGC
384 GTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGC
* * *
3445512 ACTATAAACACATTCTCCTTATTAGGATAAATGATTTTGATCATTTTCTTTTGCATGGAAATCTT
449 ACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTT
* * * *
3445577 TTATTTGCCCTATTTTCCTTAAAATCTATGTTCATCCCTTAAATAAGACAAGCATTGATTCTCAC
514 TTATTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCAT
* * ** * *
3445642 AACAATCTCTATTCTTTTCATTATT-GGAACCAAAAAACATATTCCCTTCATTAGTACGCATGAC
579 AATAGTCTCTATTCTTTTCAAGATTGGGAACC-AAAAACACATTCCCTTTATTAGTA--CATGAC
*** * * *
3445706 ATTGATGCTTTGGAT-TTAAAAGAAAAGCTTTTCTTTCCACCGTTTTTTTATAAAATCAAAGTTT
641 ATTGATGCTTTGG-TGTCGCAAGAAAAGCTTTTCTTTCCACC-ATTTTTGATAGAATCAAAGTTT
* * * * * *
3445770 GTCCCTAAAATAAGACAAACAAGAATACTCCAACTAGTCCCCATTCTTTTTA-GATTAGGCACCA
704 GTCTCTTAAATAAGACAAACATGAATACTCCAACTAATCCCTATTCTTTTCAGGATTAGGCACCA
* * *
3445834 TAAACATAGTCTTCACATTAGGATACACGATATTGTTGTTTTGGTTTCGCAAGAAAGGC-ATTTT
769 TAAACATAGTCTTCACATTAGGATACAC-ATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTT
* * * * * * * * *
3445898 CCCACCAGTTTTCT-TAAAGTCTAAGTTCGTTCTTCAATTTAGACGAACATGGATTTTGGTAATG
833 CCCACCAATTTT-TGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATG
*
3445962 ATCTTCATTCATTTTGTGATTAGGCACTATAAATACATTCTCCTCATTAGG
897 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGG
* * * * * *
3446013 ATAAATGGTATTGATAATTTTCTTTTGCATGAAAATCTTTAAATTGCTCTA-TTTCGCTTTAAAT
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTC-C-TTAAAT
* * * * *
3446077 CAAAGTTCATACCTTAAATAAGACAAGGATCGATTCTCGCAATAGTCTCTATTTTTTTCATGATT
64 CAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCATGATT
* * * * ** *
3446142 GGGAACCAAAAAATACATTCCCTTTATTAGTACGCATGACATTGGTGCTTCAGTGTTGCAAGAAC
129 GGGAACC-AAAAACACATTCCCTTCATTAGTACACATGACATTGATGCTTTGGTG-TGCAAGAAA
* * * * *
3446207 AGCTTTTCTTTCCACCATTTTTTATAGAATCACAGTTTGTCCCTTAAATAAGATAAACAAGAATA
192 AGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATA
* *
3446272 CTCCA-ACTAATCCCCATTCTTTTTAGGATTAGGCACTA-AAATCATAGTCTTCACATTAGGA-A
257 CT-CATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAA-CATAGTCTTCACATTAGGATA
* * * * * * *
3446334 TCA-CGATATTGTTGTTTTGGTTTCGCAAGGAA-AGCATTTCTGCCACCAATTTT-TGTGAAGTC
320 -CATC-ATATTGATGCTTTGGTTTCGCAA-GAATGGCTTTTTTCCCACCAATTTTCT-TAAAGTC
* * * * *
3446396 TTAGTTCGTGCCTCAAACGAAACAAATATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTA
381 TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTA
* * * * **
3446461 CGAACCATAAACACATTCTCCTCATTAGGATAATTGATATTGATGATTTTCTTTTGCATTAAAAT
446 GGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAAT
* * * **
3446526 CTTTTATTTGCCCTCTCTT-CTGTTAAATCAAAGTTCATATCTTAAATAAGACAAGCATCGATTC
511 CTTTTATTTGCCCTATTTTCCT-TAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTC
* * * *
3446590 TCATAACAGTCTCTATTCTTTTCAAGATTGGGAAGCCAAAACCCCTTTCCC-TTATTAAGATACA
575 TCATAATAGTCTCTATTCTTTTCAAGATTGGGAA-CCAAAAACACATTCCCTTTATT-AG-TACA
* ** * * *
3446654 TGACCTTGATGCTCGGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTCTGATAGAATCATAGT
637 TGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGT
* * * *
3446719 TTGACTCTTAAATATGGCAAACATGAATACT-CATACTAATCCCTTTTCCTTTT-AGGATTAGGC
702 TTGTCTCTTAAATAAGACAAACATGAATACTCCA-ACTAATCCCTATT-CTTTTCAGGATTAGGC
* * * * * * *
3446782 ACCATAAAAATGGTCTTCTCATAAGGATACATCATATTGATGCTTTGGTTTTGCAAGAATGGATT
765 ACCATAAACATAGTCTTCACATTAGGATACA-CATATTGATGCTTTGGTTTCGCAAGAAAGGCTT
* * ** * *
3446847 TTTTCCCACCAGTTTTCT-TGAAGTCTAAGTTCATGCCTCAAATGAGATGAACTTCGATTCTAGT
829 TTTTCCCACCAATTTT-TGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGT
* * * ** *
3446911 AATAATCTTCATTCATTTTGGGATTAGGCGCTATAAATGCATTCCCCTCATTAGG
893 AATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGG
* * * *
3446966 ATAAATTATAATGATGATTTTCTTTTGCATGGAAATCTTTTATTTGTCCTATTTTCCCATAAATC
1 ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTT-CCTTAAATC
** * * *
3447031 AAAGTTCATACCTTAAATAAGACAAGTTTCGATTCTCATAACTA-T-TCTATTCTTTTCAAGATT
65 AAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAAC-AGTCTCCATTCTTTTCATGATT
* * * *
3447094 GGGAAGCCAAAAA-ATATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAA
129 GGGAA-CCAAAAACACATTCCCTTCATTAGTACACATGACATTGATGCTTTGGTGT-GCAAGAAA
** * ** *
3447158 AGCTTTTCTTTCCTTCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATTCGACAAACATGAATA
192 AGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATA
* *
3447223 CTCATACTAATCCTCATTCTTTTCAGGATTAGGCACCATAAACATTGTCTTCACATTAGGATACA
257 CTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCACATTAGGATACA
* * * * * * * *
3447288 -CATTATTGTTGTTTTAGTTTCGTAAGGATGGCATTTTTT-CCACC-ATTTTTTGTAAATTATAA
322 TCA-TATTGATGCTTTGGTTTCGCAAGAATGGC-TTTTTTCCCACCAATTTTCT-TAAAGTCTAA
3447350 GTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGC
384 GTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGC
* * * *
3447415 ACTATAAACACATTCTCCTTATTAGGATAAATGATTTTGATGATTTTCTTTTGCCTAGAAATCTT
449 ACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTT
* * * * **
3447480 TTCTTTGCCCTATTTTCCATAAAATCTAAGTTCATCTCTTAAATAAGACAAGCATCGATTCTCGC
514 TTATTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCAT
* * * * * *
3447545 AACAGTTTCCATTCTTTTCATGATTAGGAACCAAAAACACATTCCCTTCATTAGTACACATGACA
579 AATAGTCTCTATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTTATTAGT--ACATGACA
* *
3447610 TTGAGGCTTTGGTGTCGCAAGAAAAGC-TTTCTTTCCACCATTTTTGATAAAATCAAAGTTTGTC
642 TTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTC
* * * * * *
3447674 TCTTAAATAAAACAAACAAGAATACTTCAACTAAACCCCATTCTTTTCAGGATTAGGCACCAAAA
707 TCTTAAATAAGACAAACATGAATACTCCAACTAATCCCTATTCTTTTCAGGATTAGGCACCATAA
* * * * *
3447739 ACACATTCCCTT--CATTA-G-TACACATGACATTGAGGCTTTGGTGTCGCAAGAAAAGCTTTCT
772 ACATAGT--CTTCACATTAGGATACACAT---ATTGATGCTTTGGTTTCGCAAGAAAGGCTTT-T
* *
3447800 TT-CCACC-ATTTTTGATAAAATCAAAGTT
831 TTCCCACCAATTTTTG-TAAAGTCTAAGTT
3447828 TGTCTCTTAA
Statistics
Matches: 4699, Mismatches: 756, Indels: 307
0.82 0.13 0.05
Matches are distributed among these distances:
945 172 0.04
946 284 0.06
947 711 0.15
948 739 0.16
949 425 0.09
950 527 0.11
951 768 0.16
952 716 0.15
953 346 0.07
954 10 0.00
955 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.37
Consensus pattern (947 bp):
ATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTATTTGCCCTATTTTCCTTAAATCA
AAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCATGATTGG
GAACCAAAAACACATTCCCTTCATTAGTACACATGACATTGATGCTTTGGTGTGCAAGAAAAGCT
TTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTCA
TACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCACATTAGGATACATCAT
ATTGATGCTTTGGTTTCGCAAGAATGGCTTTTTTCCCACCAATTTTCTTAAAGTCTAAGTTCGTG
CCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAA
ACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTATTTG
CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAATAGTC
TCTATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTTATTAGTACATGACATTGATGCTT
TGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
AGACAAACATGAATACTCCAACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATAGTCT
TCACATTAGGATACACATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTT
GTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTT
TGTGATTAGGCACTATAAACACATTCTCCTCATTAGG
Found at i:3464168 original size:159 final size:158
Alignment explanation
Indices: 3463469--3468064 Score: 1210
Period size: 159 Copynumber: 29.1 Consensus size: 158
3463459 AAGATGCTAG
* * * * * * **
3463469 AAATGAGACAAACATGGATTCTAGAAAT-GATCTTCATTCATTTTC-TGATTAGAAACTTTAAAC
1 AAATAAGACAAACATTGATTCTCGTAATAG-TCTCCATTC-TTTTCATGATTAGGAACCATAAAC
* * ** * * * *
3463532 ACATTCTCCTCTTTAGGATAAATGATATTGATGATTTTTTTTTGCATAGTAAA-CTTTTCTCTAC
64 ACATTCTCCTCATTAGGATACATGATATTGATGGCTTTGTTTTGCAT-GGAAAGCTTTTCTTTCC
*
3463596 -CCTATTTTCCTTAAAATCAAAGTTCATCCCTT
128 ACCTATTTT-CAT-AAATCAAAGTTCATCCCTT
* * * * * ** * *
3463628 AAATAAGACAAGCATCGATTCTCATAATAGTATCCATTCTTTTCATGGTGGGGAACCAAAAACGC
1 AAATAAGACAAACATTGATTCTCGTAATAGTCTCCATTCTTTTCATGATTAGGAACCATAAACAC
* * * * * * *
3463693 ATTC-CCTTCATTAGGATACGTGACATTGAT-GCTTTTGTGTGGCAAGTAAAGCTTTTATTTCCA
66 ATTCTCC-TCATTAGGATACATGATATTGATGGC-TTTGTTTTGCATGGAAAGCTTTTCTTTCCA
* * ** ***
3463756 CCTATTTTTGATAGAATCGAAGTTTGTTTGTT
129 CCTA-TTTTCATA-AATCAAAGTTCATCCCTT
* * * * * * * * *
3463788 AAATAAGACAAACA-TGAATACTCATACTAATCACCATTCTTTTTAGGATTAGGCACCGTAAACA
1 AAATAAGACAAACATTG-ATTCTCGTAATAGTCTCCATTCTTTTCATGATTAGGAACCATAAACA
* * * * *
3463852 CAATCTTCTCATTAGGATACATAATATT-A-GTGCTTTGGTTTTGCA-AGAAAGGTTTT-TTTCC
65 CATTCTCCTCATTAGGATACATGATATTGATG-GCTTT-GTTTTGCATGGAAAGCTTTTCTTT-C
* * * * *
3463913 CACCAATTTCCATAAAGTCTAAGTTCATGCCTC
127 CACCTATTTTCATAAA-TCAAAGTTCATCCCTT
* * * * * * *
3463946 AAATGAGACAAACATGGATTCTAGTAAT-GATCTTCATTCTTTTTATGATTAGGCACTATAAACA
1 AAATAAGACAAACATTGATTCTCGTAATAG-TCTCCATTCTTTTCATGATTAGGAACCATAAACA
* * ** *
3464010 CATTCTCCTCATTAGGATAAATGATATTGATGGCTTTCTTTTGCATGGAAATTTTTTCTTTGC-C
65 CATTCTCCTCATTAGGATACATGATATTGATGGCTTTGTTTTGCATGGAAAGCTTTTCTTTCCAC
*
3464074 CTATTTTCATTAAACTCAATGTTCATCCCTT
130 CTATTTTCA-TAAA-TCAAAGTTCATCCCTT
* * * *
3464105 AAATAAGACAAGCATTGATTCTCGTAATAGTCTCCATTCTTTTCATGATTGGGAATCAAAAACAC
1 AAATAAGACAAACATTGATTCTCGTAATAGTCTCCATTCTTTTCATGATTAGGAACCATAAACAC
* * * * * *
3464170 ACTC-CCTTCATTAGGATACATGACATTGAT-GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA
66 ATTCTCC-TCATTAGGATACATGATATTGATGGCTTT-GTTTTGCATGGAAAGCTTTTCTTTCCA
* * * ** *
3464233 CCGT-TTTTGATAGAATCTATGTTTGTCTCTT
129 CC-TATTTTCATA-AATCAAAGTTCATCCCTT
* * * * * * * * *
3464264 AAATACGACAAACA-TGAGTACTC-AAACTAATCCCCGTTCTTTTTAGGATTAGGCACCATAAAC
1 AAATAAGACAAACATTGA-TTCTCGTAA-TAGTCTCCATTCTTTTCATGATTAGGAACCATAAAC
* * * * * * * *
3464327 ATAGTCTTCTCATTAGGATACATCATATTAAT-GCTTTGGTTTCGCA-AGAAAGGCTTTT-TTCC
64 ACATTCTCCTCATTAGGATACATGATATTGATGGCTTT-GTTTTGCATGGAAA-GCTTTTCTTTC
* * *** *
3464389 CACCAATTTTCGTAAAGTCAAAGTTCATGAATC
127 CACCTATTTTCATAAA-TCAAAGTTCATCCCTT
* * * * * **
3464422 AAATGAGACAAACATGGATTCTAGTAAT-GATCTTCATTCCTTTT-GTGATTAGGAACTTTAAAC
1 AAATAAGACAAACATTGATTCTCGTAATAG-TCTCCATT-CTTTTCATGATTAGGAACCATAAAC
* * * * ** * *
3464485 ACACTCTCCACTTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGTAAA-CTTTTCTTTGC
64 ACATTCTCCTCATTAGGATACATGATATTGATGGCTTTGTTTTGCATGG-AAAGCTTTTCTTTCC
* *
3464549 -TCTATTTTCCTTAAAATCAAAGTTCATCCCTT
128 ACCTATTTT-CAT-AAATCAAAGTTCATCCCTT
* * * * * *
3464581 AAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTTTTTTCATGATTGGGAATCAAAAACAC
1 AAATAAGACAAACATTGATTCTCGTAATAGTCTCCATTCTTTTCATGATTAGGAACCATAAACAC
* * ** * *
3464646 ATTC-CTTTCATTAGGATACATGATGACATTGAT-GCTTTGGTGTCACAAGAAAAGCTTTTCTTT
66 ATTCTC-CTCATTAGGATACATGAT---ATTGATGGCTTT-GTTTTGCATGGAAAGCTTTTCTTT
* ** **
3464709 CCACCGT-TTTTGACA-AAATCTATA-TTTGTTTCTT
126 CCACC-TATTTT--CATAAATC-AAAGTTCATCCCTT
* * * * * * * *
3464743 AAATACGACAAACA-TGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACA
1 AAATAAGACAAACATTG-ATTCTCGTAATAGTCTCCATTCTTTTCATGATTAGGAACCATAAACA
* * * * * * *
3464807 TAGTCTTCTCATTAGGATACATCATATTAAT-GCTTTGGTTTTGCA-AGAAAGGCTTTT-TTCCC
65 CATTCTCCTCATTAGGATACATGATATTGATGGCTTT-GTTTTGCATGGAAA-GCTTTTCTTTCC
* ** * *** *
3464869 ACCAATTTTTGTAAAGTCTAAGTTCATGAATC
128 ACCTATTTTCATAAA-TCAAAGTTCATCCCTT
* * * * * **
3464901 AAATGAGACAAACATGGATTCTAGTAAT-GATCTTCATTCATTTT-GTGATTAGGAACTTTAAAC
1 AAATAAGACAAACATTGATTCTCGTAATAG-TCTCCATTC-TTTTCATGATTAGGAACCATAAAC
** * * * ** * *
3464964 ACGCTCTCCACTTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGTAAA-CTTTTCTTTGC
64 ACATTCTCCTCATTAGGATACATGATATTGATGGCTTTGTTTTGCATGG-AAAGCTTTTCTTTCC
* *** * *
3465028 -CCTATTTTCCTTAAAATCTGTGTTCATACGTT
128 ACCTATTTT-CAT-AAATCAAAGTTCATCCCTT
* ** * * * *
3465060 AAATAAAACATCCATCGATTCTCGTAATAGTCTCAATTCTTTTCCA-GATTGGGAAGCCA-AAAT
1 AAATAAGACAAACATTGATTCTCGTAATAGTCTCCATTCTTTT-CATGATTAGGAA-CCATAAAC
* * * ** * ** * *
3465123 ACATTC-CCTTCATTTGGATGCATGACATT-AAAGCTTTGCTGTCACAAGAAAAGCTTTTCTTTC
64 ACATTCTCC-TCATTAGGATACATGATATTGATGGCTTTG-TTTTGCATGGAAAGCTTTTCTTTC
* * * *
3465186 CA-TTGTTTTGGATAGAATGAAAGTT--TGCCTCTT
127 CACCTATTTT-CATA-AATCAAAGTTCAT-CC-CTT
* * ** * * * * * *
3465219 AAATAAGAAAAACA-TGAATACTTATACTAATCCCCATTCTTTT-AGGATTAGGCACCGTAAACA
1 AAATAAGACAAACATTG-ATTCTCGTAATAGTCTCCATTCTTTTCATGATTAGGAACCATAAACA
* * * * * * * ** *
3465282 TAGTCTTCACATTAGGATACACGATATTGA-CGCTTTAGTCTCACAAT--AAAGGC-TTTCTTCC
65 CATTCTCCTCATTAGGATACATGATATTGATGGCTTT-GTTTTGC-ATGGAAA-GCTTTTCTTTC
* * ** * *
3465343 CA-CTAAGTTTT-GTAAAGTCTAAGTTTGTGCCTC
127 CACCT-A-TTTTCATAAA-TCAAAGTTCATCCCTT
* * * * * * * *** *
3465376 ACATGAGACAAACATGGATTCTAGTAAT-GATCTTCTTTCATTTT-GTGATTAACCACTATAAAC
1 AAATAAGACAAACATTGATTCTCGTAATAG-TCTCCATTC-TTTTCATGATTAGGAACCATAAAC
* * * *
3465439 ACATTCTCCCTCATTAGGATAAATGATATTGATGGATTTCTTTTG-ATGGAAATCTTTTCCTTT-
64 ACATTCT-CCTCATTAGGATACATGATATTGATGGCTTTGTTTTGCATGGAAAGCTTTT-CTTTC
* * *
3465502 C-CCTATTTTCCTTAAAATCAAAGCTCATCGCTT
127 CACCTATTTT-CAT-AAATCAAAGTTCATCCCTT
** * * * * * *
3465535 AAATAAGACAAGTATCGATTCTCATAATAGTCTCCATTCCTTTCATGATTGGGAATCAAAAACAC
1 AAATAAGACAAACATTGATTCTCGTAATAGTCTCCATTCTTTTCATGATTAGGAACCATAAACAC
* * * * *
3465600 ATTC-CCTTCATTAGGATACATGATATTGAT-GTTTTGGTGTCGCA-AGAAGAGCTTTTCTTTCT
66 ATTCTCC-TCATTAGGATACATGATATTGATGGCTTT-GTTTTGCATGGAA-AGCTTTTCTTTCC
* * * ** *
3465662 ACCTTTTTTGATAGAATCATAGTTTGTCTCTT
128 ACCTATTTTCATA-AATCAAAGTTCATCCCTT
* * * * * * *
3465694 AAATATGACAAACA-TGAATACCCAGT-CTAATC-CTCATTCTTTTCAGGATTAGGCACCATAAA
1 AAATAAGACAAACATTG-ATTCTC-GTAATAGTCTC-CATTCTTTTCATGATTAGGAACCATAAA
* * * * * * * * * * *
3465756 CATAGTCTTCTCGTTACGATACATCATGTTGAT-GCTTTGGTTT-CGTAAGAAAGGTATTT-TTT
63 CACATTCTCCTCATTAGGATACATGATATTGATGGCTTTGTTTTGCAT-GGAAAGCT-TTTCTTT
* ** * * * *** *
3465818 CCACCAACTTTTGTTAAGTCTAAGTTCGTGAATC
126 CCACCTA-TTTTCATAAATCAAAGTTCATCCCTT
* * ** * * **
3465852 AAATGAGACAAACATGGATTCTAATAAT-GATCTTCATTCATTTT-GTGATTCA-GAACTTTAAA
1 AAATAAGACAAACATTGATTCTCGTAATAG-TCTCCATTC-TTTTCATGATT-AGGAACCATAAA
* * * ** * *
3465914 CACATTCGCCTCTTTA-GATAAATGATATTGATGATTTTCTTTTGCATGGTAAA-CTCTTCTTT-
63 CACATTCTCCTCATTAGGATACATGATATTGATGGCTTTGTTTTGCATGG-AAAGCTTTTCTTTC
** * * **
3465976 GTCCTATTTTCCTTAAAATCAATGTTCAAACCTT
127 CACCTATTTT-CAT-AAATCAAAGTTCATCCCTT
* ** * * *
3466010 AAATAAAACATCCATCGATTCTCGTAATAGTCTCAATTCTTTTCCA-GATTGGGAAGCCA-AAAC
1 AAATAAGACAAACATTGATTCTCGTAATAGTCTCCATTCTTTT-CATGATTAGGAA-CCATAAAC
* * * * * * * * *
3466073 ACATTC-CCTTCATTAGGATGCATGAAATTGA-AGCTTGGCTGTCGCAAGAAAAGCTTTTCTTTT
64 ACATTCTCC-TCATTAGGATACATGATATTGATGGCTTTG-TTTTGCATGGAAAGCTTTTCTTTC
* ** **
3466136 CACC-ATTTTGGATAGAATCAAAGTTTGTTTCTT
127 CACCTATTTT-CATA-AATCAAAGTTCATCCCTT
* * * * * * * * * * *** *
3466169 AAATAAGACAAGCA-TGAATACTCATACTAATCCCCATTCTTTTTAGGATTAAGCATTGTAAGCA
1 AAATAAGACAAACATTG-ATTCTCGTAATAGTCTCCATTCTTTTCATGATTAGGAACCATAAACA
* * ** * ** * *
3466233 TAGTCTTTTCATTAGGATACATAATATT-A-GTGCTTTGGAATTGCA-AGAAAGGCTTTT-TTCC
65 CATTCTCCTCATTAGGATACATGATATTGATG-GCTTT-GTTTTGCATGGAAA-GCTTTTCTTTC
* * * * *
3466294 CACCTATTTTTATAAAGTCCAAGTTCGTGCCTC
127 CACCTATTTTCATAAA-TCAAAGTTCATCCCTT
* * * * * * *
3466327 AAATGAGACAAACATGGATTCCCGTAAT-GATCTTCATTC-ATT-ATGTAATTAGGCACTATAAA
1 AAATAAGACAAACATTGATTCTCGTAATAG-TCTCCATTCTTTTCATG--ATTAGGAACCATAAA
* * * * * * * * * *
3466389 CCCATTCCCCTCATTGGGATAAATGATATTGATGACTTTATTTTGGATGAAAATCTTTTCTTTGC
63 CACATTCTCCTCATTAGGATACATGATATTGATGGCTTTGTTTTGCATGGAAAGCTTTTCTTTCC
* * * * *
3466454 -TCTAGTTTTCTTAAAATAAAAGTTAATCCCTA
128 ACCTA-TTTTCAT-AAATCAAAGTTCATCCCTT
* * * ** *
3466486 AAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTTGTGATT-GGAAACCAAAAAAC
1 AAATAAGACAAACATTGATTCTCGTAATAGTCTCCATTCTTTTCATGATTAGG-AACC-ATAAAC
* * * * * * ** * * *
3466550 AAATTC-CCTTCATTAGTATGCATGACATAGAT-GCTTTGGTGTCACAAGAAAAGCTTTTATTTC
64 ACATTCTCC-TCATTAGGATACATGATATTGATGGCTTT-GTTTTGCATGGAAAGCTTTTCTTTC
* * * **
3466613 CACCGATTTTAATAGAATC-AAGTTTATCTTTT
127 CACCTATTTTCATA-AATCAAAGTTCATCCCTT
* * * * * * * *
3466645 AAATAAGACAAACA-AGAATACTC-CAACTAATCCCCATTTTTTTCAAGATTAGGTACCATAAAC
1 AAATAAGACAAACATTG-ATTCTCGTAA-TAGTCTCCATTCTTTTCATGATTAGGAACCATAAAC
* * * * ** * * * *
3466708 ATAATCTTCACATTAGGATACATGATATTG-T-TTTTTGGTTTCGCA-AGAAAGGCATTT-TTCC
64 ACATTCTCCTCATTAGGATACATGATATTGATGGCTTT-GTTTTGCATGGAAA-GCTTTTCTTTC
* * * * ** * * *
3466769 CACCAATTTT-TTTATTTTAAGTTCGTGCCTC
127 CACCTATTTTCATAAATCAAAGTTCATCCCTT
* * * * * * * * **
3466800 AAATGAGACAAACATGGATTCTAGTAAT-GATCTTCATTCATTTT-GTTAATAGGCACTGTAAAC
1 AAATAAGACAAACATTGATTCTCGTAATAG-TCTCCATTC-TTTTCATGATTAGGAACCATAAAC
* * * ***
3466863 ACATTCTACTCATTAGGATAAATG--ATGGAAATCTTT-TATTTGC--------CTTATT-TTT-
64 ACATTCTCCTCATTAGGATACATGATATTGATGGCTTTGT-TTTGCATGGAAAGCTT-TTCTTTC
*
3466915 ---C----TT--TAAATCAAAGTTCATACCTT
127 CACCTATTTTCATAAATCAAAGTTCATCCCTT
* * * * * * * *
3466938 AAATAAGACAAGCATTGATGCTCGTAAAAATCTCTACTCTTTTCAAGATTGGGAACCCA-AAACA
1 AAATAAGACAAACATTGATTCTCGTAATAGTCTCCATTCTTTTCATGATTAGGAA-CCATAAACA
* * * * * * *
3467002 CATTCTTCTCATTAGGGTACATTA-ATTGAT-GCTTTGGTGTTGTAAGAAAAGCTTTTCTTTCCA
65 CATTCTCCTCATTAGGATACATGATATTGATGGCTTT-GTTTTGCATGGAAAGCTTTTCTTTCCA
* * * ** *
3467065 CC-ATTTTTTATGGAATCATAGTTTGTCTCTT
129 CCTA-TTTTCAT-AAATCAAAGTTCATCCCTT
* * * * * * * * * *
3467096 AGATATGACAAACA-TGAATACTCATACTAATC-CCTGTTCTTTTCAAGATTATGCACCATAAAC
1 AAATAAGACAAACATTG-ATTCTCGTAATAGTCTCC-ATTCTTTTCATGATTAGGAACCATAAAC
*** * * * * * * * *
3467159 ATGGTCTTCTAATTAGGATACATCATATTGAT-CCTTCGATTTCGCA-AGAAGGGCTTTT-TTTC
64 ACATTCTCCTCATTAGGATACATGATATTGATGGCTTTG-TTTTGCATGGAA-AGCTTTTCTTT-
* ** * * * *
3467221 CCACCAATTTTGGTAAAGTCTAAGTTCGTTCCTC
126 CCACCTATTTTCATAAA-TCAAAGTTCATCCCTT
* ** * * * ** * *
3467255 AAATGAGAGGAACATGGATAC-C-T-ATAGTGATCTTCATT-TATTTTGTGATTAGGCACTATAA
1 AAATAAGACAAACATTGATTCTCGTAATA--G-TCTCCATTCT-TTTCATGATTAGGAACCATAA
* * * ** * *
3467316 ACGCATTCTCCTCATTAGGATAAATGATATTGATGACTTCCTTTTGCTTGGAAATCTTTTCTTTT
62 ACACATTCTCCTCATTAGGATACATGATATTGATGGCTTTGTTTTGCATGGAAAGCTTTTC-TTT
*
3467381 CC-CC-ATTTTCCTTAAAATCAAAGTTCATCCCTT
126 CCACCTATTTT-CAT-AAATCAAAGTTCATCCCTT
* * * * * *
3467414 AAATAAGACAAGCATCGATTCTTGTAATAGTCCCCATTCTTTTCAAGA-TCGAGAAGCCA-AAAC
1 AAATAAGACAAACATTGATTCTCGTAATAGTCTCCATTCTTTTCATGATTAG-GAA-CCATAAAC
* * *
3467477 ACATTC-CCTTCCTTAGGATACATGACATTGAT-GCTTTGGTGTTGCA-GGAATAGCTTTTCTTT
64 ACATTCTCC-TCATTAGGATACATGATATTGATGGCTTT-GTTTTGCATGGAA-AGCTTTTCTTT
* * **
3467539 CCA-CTGTTTTTGATAGAATCAAAGTTTGTCTCC-T
126 CCACCT-ATTTTCATA-AATCAAAGTTCATC-CCTT
* ** * * * * * * * * *
3467573 AAAAAAGACAAACA-TGAATAGTCATACTAATCCCCATTCATTTCAAGGTTAGGCAGCATAAACA
1 AAATAAGACAAACATTG-ATTCTCGTAATAGTCTCCATTCTTTTCATGATTAGGAACCATAAACA
* * ** ** * *
3467637 TAGTCTTTTCATTAGGATACACAATATT--TGTGCTTTGGTTTTGCA-AGAAAGGC-TTTCTTCC
65 CATTCTCCTCATTAGGATACATGATATTGATG-GCTTT-GTTTTGCATGGAAA-GCTTTTCTTTC
* * * * * * *
3467698 CTCCAATTTTTGCA-AAGTCTAAGTTCGTGCCTC
127 CACCTA-TTTT-CATAAATCAAAGTTCATCCCTT
* * * * * * * *
3467731 AAATAGGACAAGCATGGATTCTCATAAT-GATCTTCATTC-ATT-ATGTAATTAGGCACTATAAA
1 AAATAAGACAAACATTGATTCTCGTAATAG-TCTCCATTCTTTTCATG--ATTAGGAACCATAAA
* * ** * * * * *
3467793 CCCATTCTCCTCATTAGGATAAATGATATTGATCACTTTCTTTTGGATGAAAATCTTTTCTTTGC
63 CACATTCTCCTCATTAGGATACATGATATTGATGGCTTTGTTTTGCATGGAAAGCTTTTCTTTCC
* * * *
3467858 -CCTAGTTTTCTTAAAATAAAAGTTAATCCCTA
128 ACCTA-TTTTCAT-AAATCAAAGTTCATCCCTT
* * * * ** *
3467890 AAATAAGACAAGCATCGATTCTTGTAATAGTCTCCATCCTTTTCATGATT-GGAAATGAAAAAAC
1 AAATAAGACAAACATTGATTCTCGTAATAGTCTCCATTCTTTTCATGATTAGG-AA-CCATAAAC
* * * * ** * *
3467954 AAATTC-CCTTCATTAGTATGCATGACATTGAT-GCTTTGGGGTTGCAAGAAAAGCTTTTCTTTC
64 ACATTCTCC-TCATTAGGATACATGATATTGATGGCTTT-GTTTTGCATGGAAAGCTTTTCTTTC
* * * **
3468017 CACCGT-TTTTGATAGAACCAAAGTTTATCTATT
127 CACC-TATTTTCATA-AATCAAAGTTCATCCCTT
3468050 AAATAAGACAAACAT
1 AAATAAGACAAACAT
3468065 AAACTATCAT
Statistics
Matches: 3130, Mismatches: 1024, Indels: 565
0.66 0.22 0.12
Matches are distributed among these distances:
137 4 0.00
138 74 0.02
139 10 0.00
140 1 0.00
143 1 0.00
146 4 0.00
147 10 0.00
151 1 0.00
153 4 0.00
154 6 0.00
155 69 0.02
156 34 0.01
157 133 0.04
158 932 0.30
159 1393 0.45
160 316 0.10
161 26 0.01
162 103 0.03
163 7 0.00
164 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.37
Consensus pattern (158 bp):
AAATAAGACAAACATTGATTCTCGTAATAGTCTCCATTCTTTTCATGATTAGGAACCATAAACAC
ATTCTCCTCATTAGGATACATGATATTGATGGCTTTGTTTTGCATGGAAAGCTTTTCTTTCCACC
TATTTTCATAAATCAAAGTTCATCCCTT
Found at i:3464473 original size:476 final size:475
Alignment explanation
Indices: 3463469--3472184 Score: 5663
Period size: 476 Copynumber: 18.1 Consensus size: 475
3463459 AAGATGCTAG
* * ** *
3463469 AAATGAGACAAACATGGATTCTAGAAATGATCTTCATTCATTTTCTGATTAGAAACTTTAAACAC
1 AAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACAC
* * * * *
3463534 ATTCTCCTCTTTAGGATAAATGATATTGATGATTTTTTTTTGCATAGTAAA-CTTTTCTCTACCC
66 ATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAT-GGAAATCTTTTCTTTGCCC
* *
3463598 TATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAATAGTATCC
130 TATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCC
* * * *
3463663 ATTCTTTTCATGGTGGGGAA-CCAAAAACGCATTCCCTTCATTAGGATACGTGACATTGATGCTT
195 ATTCTTTTCATGATTGGGAAGCC-AAAACACATTCCCTTCATTAGGATACATGACATTGATGCTT
* * * * * * * *
3463727 TTGTGTGGCAAGTAAAGCTTTTATTTCCACCTATTTTTGATAGAATCGAAGTTTGTTTGTTAAAT
259 TGGTGTCGCAAGAAAAGCTTTTCTTTCCACC-GTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* * * *
3463792 AAGACAAACATGAATACTCATACTAATCACCATTCTTTTTAGGATTAGGCACCGTAAACACAATC
323 AAGACAAACATGAATACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTC
* * *
3463857 TTCTCATTAGGATACATAATATT-AGTGCTTTGGTTTTGCAAGAAAGGTTTTTTTCCCACCAATT
388 TTCTCATTAGGATACATCATATTGA-TGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATT
** *
3463921 TCCATAAAGTCTAAGTTCATGCCTC
452 T-TGTAAAGTCTAAGTTCGTGCCTC
* *
3463946 AAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTATGATTAGGCACTATAAACAC
1 AAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACAC
** *
3464011 ATTCTCCTCATTAGGATAAATGATATTGATGGCTTTCTTTTGCATGGAAATTTTTTCTTTGCCCT
66 ATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCT
* * * *
3464076 ATTTTCATTAAACTCAATGTTCATCCCTTAAATAAGACAAGCATTGATTCTCGTAATAGTCTCCA
131 ATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCA
* * *
3464141 TTCTTTTCATGATTGGGAATCAAAAACACACTCCCTTCATTAGGATACATGACATTGATGCTTTG
196 TTCTTTTCATGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTG
* * *
3464206 GTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCTATGTTTGTCTCTTAAATACG
261 GTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
* * *
3464271 ACAAACATGAGTACTCAAACTAATCCCCGTTCTTTTTAGGATTAGGCACCATAAACATAGTCTTC
326 ACAAACATGAATACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTC
*
3464336 TCATTAGGATACATCATATTAATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTCG
391 TCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTT-G
* * **
3464401 TAAAGTCAAAGTTCATGAATC
455 TAAAGTCTAAGTTCGTGCCTC
* * *
3464422 AAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCCTTTTGTGATTAGGAACTTTAAACAC
1 AAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACAC
* * * *
3464487 ACTCTCCACTTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGTAAA-CTTTTCTTTGCTC
66 ATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGG-AAATCTTTTCTTTGCCC
3464551 TATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCC
130 TATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCC
* * * *
3464616 ATTTTTTTCATGATTGGGAATCAAAAACACATTCCTTTCATTAGGATACATGATGACATTGATGC
195 ATTCTTTTCATGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATAC---ATGACATTGATGC
* * * * *
3464681 TTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGACAAAATCTATA-TTTGTTTCTTAA
257 TTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATC-AAAGTTTGTCTCTTAA
* *
3464745 ATACGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAG
321 ATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAG
* *
3464810 TCTTCTCATTAGGATACATCATATTAATGCTTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAAT
386 TCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAA-
* **
3464875 TTTTGTAAAGTCTAAGTTCATGAATC
450 TTTTGTAAAGTCTAAGTTCGTGCCTC
* *
3464901 AAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGAACTTTAAACAC
1 AAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACAC
** * *
3464966 GCTCTCCACTTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGTAAA-CTTTTCTTTGCCC
66 ATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGG-AAATCTTTTCTTTGCCC
*** * * * ** *
3465030 TATTTTCCTTAAAATCTGTGTTCATACGTTAAATAAAACATCCATCGATTCTCGTAATAGTCTCA
130 TATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCC
* * * * *
3465095 ATTCTTTTCCA-GATTGGGAAGCCAAAATACATTCCCTTCATTTGGATGCATGACATTAAAGCTT
195 ATTCTTTT-CATGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTT
* * ** * * *
3465159 TGCTGTCACAAGAAAAGCTTTTCTTTCCATTGTTTTGGATAGAATGAAAGTTTGCCTCTTAAATA
259 TGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * *
3465224 AGAAAAACATGAATACTTATACTAATCCCCATTC-TTTTAGGATTAGGCACCGTAAACATAGTCT
324 AGACAAACATGAATACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCT
* * * * * * * *
3465288 TCACATTAGGATACA-CGATATTGACGCTTTAGTCTCACAATAAAGGCTTTCTTCCCACTAAGTT
389 TCTCATTAGGATACATC-ATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAA-TT
*
3465352 TTGTAAAGTCTAAGTTTGTGCCTC
452 TTGTAAAGTCTAAGTTCGTGCCTC
* * **
3465376 ACATGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTGTGATTAACCACTATAAACAC
1 AAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACAC
3465441 ATTCTCCCTCATTAGGATAAATGATATTGATGGA-TTTCTTTTG-ATGGAAATCTTTTCCTTT-C
66 ATTCT-CCTCATTAGGATAAATGATATTGAT-GATTTTCTTTTGCATGGAAATCTTTT-CTTTGC
* * * *
3465503 CCTATTTTCCTTAAAATCAAAGCTCATCGCTTAAATAAGACAAGTATCGATTCTCATAATAGTCT
128 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCT
* * * * *
3465568 CCATTCCTTTCATGATTGGGAATCAAAAACACATTCCCTTCATTAGGATACATGATATTGATGTT
193 CCATTCTTTTCATGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * * *
3465633 TTGGTGTCGCAAGAAGAGCTTTTCTTTCTACCTTTTTTGATAGAATCATAGTTTGTCTCTTAAAT
258 TTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* * * *
3465698 ATGACAAACATGAATACCCAGT-CTAATCCTCATTCTTTTCAGGATTAGGCACCATAAACATAGT
323 AAGACAAACATGAATACTCA-TACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGT
* * * * *
3465762 CTTCTCGTTACGATACATCATGTTGATGCTTTGGTTTCGTAAGAAAGG-TATTTTTTCCACCAAC
387 CTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCT-TTTTTCCCACCAA-
* **
3465826 TTTTGTTAAGTCTAAGTTCGTGAATC
450 TTTTGTAAAGTCTAAGTTCGTGCCTC
* * *
3465852 AAATGAGACAAACATGGATTCTAATAATGATCTTCATTCATTTTGTGATTCA-GAACTTTAAACA
1 AAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATT-AGGCACTATAAACA
* * * *
3465916 CATTCGCCTCTTTA-GATAAATGATATTGATGATTTTCTTTTGCATGGTAAA-CTCTTCTTTGTC
65 CATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGG-AAATCTTTTCTTTGCC
* ** * **
3465979 CTATTTTCCTTAAAATCAATGTTCAAACCTTAAATAAAACATCCATCGATTCTCGTAATAGTCTC
129 CTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTC
* * * *
3466044 AATTCTTTTCCA-GATTGGGAAGCCAAAACACATTCCCTTCATTAGGATGCATGAAATTGAAGC-
194 CATTCTTTT-CATGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * * *
3466107 TTGGCTGTCGCAAGAAAAGCTTTTCTTTTCACCATTTTGGATAGAATCAAAGTTTGTTTCTTAAA
258 TTGG-TGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAA
* * *** *
3466172 TAAGACAAGCATGAATACTCATACTAATCCCCATTCTTTTTAGGATTAAGCATTGTAAGCATAGT
322 TAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGT
* * *
3466237 CTTTTCATTAGGATACATAATATT-AGTGCTTTGGAATT-GCAAGAAAGGCTTTTTTCCCACCTA
387 CTTCTCATTAGGATACATCATATTGA-TGCTTTGG-TTTCGCAAGAAAGGCTTTTTTCCCACC-A
* * *
3466300 TTTTTATAAAGTCCAAGTTCGTGCCTC
449 ATTTTGTAAAGTCTAAGTTCGTGCCTC
** * * *
3466327 AAATGAGACAAACATGGATTCCCGTAATGATCTTCATTCATTATGTAATTAGGCACTATAAACCC
1 AAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACAC
* * * * * * *
3466392 ATTCCCCTCATTGGGATAAATGATATTGATGACTTTATTTTGGATGAAAATCTTTTCTTTGCTCT
66 ATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCT
* * * *
3466457 AGTTTT-CTTAAAATAAAAGTTAATCCCTAAAATAAGACAAGCATCGATTCTCGTAACAGTCTCC
131 A-TTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCC
** * * * * *
3466521 ATTCTTTTTGTGATT-GGAAACCAAAAAACAAATTCCCTTCATTAGTATGCATGACATAGATGCT
195 ATTCTTTTCATGATTGGGAAGCC--AAAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * * * * *
3466585 TTGGTGTCACAAGAAAAGCTTTTATTTCCACCGATTTTAATAGAATC-AAGTTTATCTTTTAAAT
258 TTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* * * *
3466649 AAGACAAACAAGAATACTCCA-ACTAATCCCCATT-TTTTTCAAGATTAGGTACCATAAACATAA
323 AAGACAAACATGAATACT-CATACTAATCCCCATTCTTTTT-AGGATTAGGCACCATAAACATAG
* * ** *
3466712 TCTTCACATTAGGATACATGATATTG-TTTTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAAT
386 TCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAAT
** * *
3466776 TTT-TTTATTTTAAGTTCGTGCCTC
451 TTTGTAAAGTCTAAGTTCGTGCCTC
* * *
3466800 AAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTTAATAGGCACTGTAAACAC
1 AAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACAC
* * *
3466865 ATTCTACTCATTA-G------GATA---A--A--------TG-ATGGAAATCTTTTATTTGCCTT
66 ATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCT
* * * * * * * *
3466909 ATTTTTCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATTGATGCTCGTAAAAATCTCTA
131 ATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCA
* * * * * *
3466974 CTCTTTTCAAGATTGGGAACCCAAAACACATT-CTTCTCATTAGGGTACATTA-ATTGATGCTTT
196 TTCTTTTCATGATTGGGAAGCCAAAACACATTCCCT-TCATTAGGATACATGACATTGATGCTTT
* * * * * * * *
3467037 GGTGTTGTAAGAAAAGCTTTTCTTTCCACCATTTTTTATGGAATCATAGTTTGTCTCTTAGATAT
260 GGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
** * * * *
3467102 GACAAACATGAATACTCATACTAATCCCTGTTCTTTTCAAGATTATGCACCATAAACATGGTCTT
325 GACAAACATGAATACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTT
* * * * *
3467167 CTAATTAGGATACATCATATTGATCCTTCGATTTCGCAAGAAGGGCTTTTTTTCCCACCAATTTT
390 CTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTTTTCCCACCAATTTT
*
3467232 GGTAAAGTCTAAGTTCGTTCCTC
454 -GTAAAGTCTAAGTTCGTGCCTC
** * * * *
3467255 AAATGAGAGGAACATGGATACCTA-TAGTGATCTTCATTTATTTTGTGATTAGGCACTATAAACG
1 AAATGAGACAAACATGGAT-TCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACA
* * * *
3467319 CATTCTCCTCATTAGGATAAATGATATTGATGACTTCCTTTTGCTTGGAAATCTTTTCTTTTCCC
65 CATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCC
* * *
3467384 CATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTTGTAATAGTCCCC
130 TATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCC
* * * *
3467449 ATTCTTTTCAAGATCGAGAAGCCAAAACACATTCCCTTCCTTAGGATACATGACATTGATGCTTT
195 ATTCTTTTCATGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTT
* * * * * *
3467514 GGTGTTGCAGGAATAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCCTAAAAAA
260 GGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
* ** *
3467579 GACAAACATGAATAGTCATACTAATCCCCATTCATTTCAAGG-TTAGGCAGCATAAACATAGTCT
325 GACAAACATGAATACTCATACTAATCCCCATTC-TTTTTAGGATTAGGCACCATAAACATAGTCT
* * * *
3467643 TTTCATTAGGATACA-CAATATTTG-TGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCTCCAATT
389 TCTCATTAGGATACATC-ATA-TTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAA-T
*
3467706 TTTGCAAAGTCTAAGTTCGTGCCTC
451 TTTGTAAAGTCTAAGTTCGTGCCTC
* * *
3467731 AAAT-AGGACAAGCATGGATTCTCA-TAATGATCTTCATTCATTATGTAATTAGGCACTATAAAC
1 AAATGA-GACAAACATGGATTCT-AGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAAC
* * * * *
3467794 CCATTCTCCTCATTAGGATAAATGATATTGATCACTTTCTTTTGGATGAAAATCTTTTCTTTGCC
64 ACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
* * * *
3467859 CTAGTTTT-CTTAAAATAAAAGTTAATCCCTAAAATAAGACAAGCATCGATTCTTGTAATAGTCT
129 CTA-TTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCT
* * ** * * *
3467923 CCATCCTTTTCATGATTGGAAATGAAAAAACAAATTCCCTTCATTAGTATGCATGACATTGATGC
193 CCATTCTTTTCATGATTGGGAA-GCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * * * *
3467988 TTTGGGGTTGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAACCAAAGTTTATCTATTAAA
257 TTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAA
* * *** ** * * *
3468053 TAAGACAAACATAAACTA-TCATA-AACATAGTC-TTCTCATTAGGA-CA--CACGATATTGATG
322 TAAGACAAACATGAA-TACTCATACTA-ATCCCCATTCTTTTTAGGATTAGGCACCATA---A-A
* * * ** * * *** ** * * **
3468112 CTTTGGT-TTCGCA--AGAGAGGCTTTATCCCGAT-C--AAGTTTTG--A-AAAGTCTAAGTTCA
381 C-ATAGTCTTCTCATTAG-GATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCT---TTTT
* * * ** *
3468168 TGCCTCGAA-TGAG-ACAA-AC-ATAGATTC-TAG--T-
441 TCCCACCAATTTTGTA-AAGTCTA-AG-TTCGT-GCCTC
** ** ** * * *
3468199 -AATGATCTTCATTCATTTTGGGATTAGGCACTAG-AAACA-CATTCTTCTCA-TTAG-GATAAA
1 AAATGA--GACAAACA---T-GGATT-----CTAGTAATGATC-TTCAT-TCATTTTGTGAT-TA
* * ** ** * ** ** *
3468259 TG-A-TATTTATGATTTTTTTTTGCA-T-GGA-AATATTTTCTTTGCCAT-ATTTTCCTTAAATT
52 GGCACTA-TAAACACATTCTCCT-CATTAGGATAA-ATGAT-ATTG--ATGATTTT-CTT---TT
* *** * * ** * * *** * **** **
3468318 -CAAAGTTCATCCCTTATATAAG-ACAAGCATCGATTCCCGT-AACAGTCTCCATTCTTTTCAAG
107 GC-ATGGAAAT--CTTTTCTTTGCCCTATTTTC-CTTAAAATCAA-AGT-T-CA-TCCCTT-AA-
* * ** * ** * *** *
3468380 ATTGGGAAG-CAA-AAACGCATTCTTTTCATTAGGAT-AATTGAAATTGAT-ACTTTGGTGTCAC
162 A-T---AAGACAAGCATCG-ATTCTCGT-AATAGTCTCCATT-CTTTTCATGA--TTGG-G--A-
* * * ** * ** *** *** *
3468441 AG-GAAAAGCTTTTCTTTCCACCGTTTTTTATAGA-ATCAT-AGTTTGCCACTTAAAT-ACGACA
214 AGCCAAAA-C---ACATT-C-CC-TTCATTA-GGATA-CATGACATTGATGCTTTGGTGTCG-CA
* * * ** * * * * * *
3468502 A-ACATG-TATAGTTATACTATTC-TTTTCAAGATTAGGCACCATAAACATGGTCT-TCTCATAA
269 AGAAAAGCTTTTCTT-T-CCA-CCGTTTT--TGA-TA-G-A--ATCAA-A--GTTTGTCTCTTAA
* * ** ** * *** ** ** * * **
3468563 GGATACA-TCATATAGATGCTTTGGGGTTGCA-A-GAAAAGCTTTTCTTTCCACCGTTTTTG-A-
321 --ATA-AGACA-A-ACATG-AAT---ACT-CATACTAATCCCCATTCTTTTTA-GGATTAGGCAC
* * * * * * * * * ** * ** * **
3468623 TAGAACCAAAGT-TTATCTATTA-AATA-AGACAAACAT-AAACTAT-CATACG-AAG--ACCCA
375 CATAAACATAGTCTTCTC-ATTAGGATACA-TCATA-TTGATGCTTTGGTTTCGCAAGAAAGGC-
* ** ** * ** *
3468680 TTCTTTT--TA-GGATTAGGCACCATAAAC-ATAG-TC-T-TCTC
436 TT-TTTTCCCACCAATTTTGTA--A-AGTCTA-AGTTCGTGCCTC
* * * * * * * * * *** ** * * ***
3468718 ATTAGGACACACGATATTGATGCT--T--TGGTTTTGCAAGAGAGGCTTTATCCCGATCAAGTTT
1 A-AATGAGACA-AACATGGATTCTAGTAATGATCTT-C-ATTCA---TTT-T-GTGATTAGGCAC
* *
3468779 TGA-AAAGTCTA-AGTTCATGCCTCGAAT-GAGACAAACATAGAT-TCTAGTAATGATCTTCATT
57 T-ATAAA--C-ACA-TTC-T-CCTC-ATTAG-GA-TAA-AT-GATAT-T-G--ATGA--TT--TT
* * ****** * **** * * * **
3468840 CATTTTGGGATTAGGCACTAGAAACACATT-CTCCTCA-TTAGGAT-AAATGATA-TTTAT-GAT
102 C-TTTT-GCA-T-GG-A-AATCTTTTCTTTGC-CCT-ATTTTCCTTAAAATCAAAGTTCATCCCT
*** ** * * *** * ** * * ** ** ***
3468900 TTTTTTTG-CATGGAAATATTTTCTTTGCCATATTTTCCTTAAATTCAAAGTTCATCCCTTATAT
159 TAAATAAGACA-AG-CATCGATTC-TCGTAATAGTCTCC----ATTC--TTTTCAT-GATT-GGG
* * * ** ** * **** * * * ** * *
3468964 AAGAC-AAGCATCGATTCCCGT-AACAGTCTCCATTTTTTTCAAG-ATTGG-GAAGCCA-AAATG
213 AAGCCAAAACA-C-ATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAG
* * * * * * ** * * *
3469024 CATTCCCTT-CATCAG-----GATA-ATTGAAA--TTGATACT-TT-GGT--GTC--ACAGGAAA
276 CTTTTCTTTCCA-CCGTTTTTGATAGAATCAAAGTTTG-T-CTCTTAAATAAGACAAACATGAAT
* * * * * * * *
3469074 AGCT-TTTCT-TTCCACCGTT-TTTGATAGAATCATAGTTTGTCTATTAATACGACAAACAT-GT
338 A-CTCATACTAATCC-CCATTCTTT-TTAGGAT--TAG---G-C-------ACCATAAACATAGT
* * * * * * * * ** *
3469135 ATCCTCATACTA--ATCCCCGTTC-TTTTCAAT-ATTAGG-CAC-CATA-AACATGGGC--TTCT
387 CTTCTCAT--TAGGAT--AC-ATCATATT-GATGCTTTGGTTTCGCA-AGAA-A--GGCTTTTTT
** *** ** * * * **
3469191 CATAAGGATACAT-CATA-T-TGATGCTTCG-GATTC
442 CCCACCAAT-TTTGTAAAGTCT-AAG-TTCGTGCCTC
* *** * ** ** *
3469224 ACAA-GA-A-AAGC-TTTTTTCCCACCAGTTTTGTCAAAGTCTAAGTTCATGCCTCA-AATGAGA
1 A-AATGAGACAAACATGGATT----CTAGTAATG----A-TC----TTCAT---TCATTTTGTGA
** * ** * * * * ** **
3469284 CGAGCATGGATTCTAGTAATGATC-TTCAT--TCATTTTGTGAT-TAGGCACTCTAAACACATTC
49 TTAG---GCA--CTA-TAAACA-CATTC-TCCTCA-TTAG-GATAAATG-A-TATTGA-TGATT-
* * ** * * *** * ** **
3469345 TCCTTTT-TA-GGATAAATGATAT-TATGATTATATTTTGCATGGAAATC-TTGTCTTTGCCCTA
100 TTCTTTTGCATGG--AAATCTTTTCTTTG-CCCTATTTT-CCTTAAAATCAAAG---TT---C-A
* * * *
3469406 TTTTCCTTAAAATCAAAGTTTATCCCTTAAATAAGCAAGCATCGATTCTCATAATAGTATCCAAT
154 --TCCCTT-AAAT--AAG---------------A-CAAGCATCGATTCTCGTAATAGTCTCCATT
* *
3469471 CTTTTCAAGATTGGGAAGCCAAATCACATTCCCTTTC-TTAGGATACATGACATTGATGCTTTGG
198 CTTTTCATGATTGGGAAGCCAAAACACATTCCC-TTCATTAGGATACATGACATTGATGCTTTGG
* *
3469535 TGTTC-CAAGAAAAGCTTTTCTTTCCATCAG-TTTTGATAGAATCAAAGTTTATCTCTTAAATAA
262 TG-TCGCAAGAAAAGCTTTTCTTTCCA-CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
* * *
3469598 GATAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTT
325 GACAAACATGAATACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTT
* * * * * *
3469663 CTCATTAGGATACA-CAATAATGATACTTTGGTTTCGC--GAGAGGCTTTATCCCCAGCAAGTTT
390 CTCATTAGGATACATC-ATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAA-TTT
3469725 TGTAAAGTCTAAAG-TCGTGCCTC
453 TGTAAAGTCT-AAGTTCGTGCCTC
* *
3469748 AAATGAGACAAACATGGATTCTAGTAACGATCTTCATTCATTTTATGATTAGGCACTATAAACAC
1 AAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACAC
* * * *
3469813 ATTATCCTCATTAGGATAAATGATAATGATGATTTTCTTTGGCATGGAAATCTTTTCTTTTCCCT
66 ATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCT
* * * * *
3469878 AATTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCAATTCTCATAACAGTCGCCA
131 ATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCA
* * * *
3469943 TTCTTTTCAAGATTGGGAAGCCAAATCGCAATCCCTTTC-TTAGGATACATGACATTGATGCTTT
196 TTCTTTTCATGATTGGGAAGCCAAAACACATTCCC-TTCATTAGGATACATGACATTGATGCTTT
* * * * *
3470007 GGTGTTGCAAGAAAAGCTTTTCCTTCCATCATTTTTGATAGAATCAAAGTTTGTCTCTTGAATAA
260 GGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
* *
3470072 GACAAACATGAATAGTCATACTAATCCTCATTCTTTTCT-GGATTAGGCACCATAAACATAGTCT
325 GACAAACATGAATACTCATACTAATCCCCATTCTTTT-TAGGATTAGGCACCATAAACATAGTCT
* * ** * * *
3470136 TCTCACTAGGATACATGATATTGATGCTTTCATTTCGCAAGAAAGGCTTTATCCCCAGCAAGTTT
389 TCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAA-TTT
*
3470201 TGTAAAGTATAAGTTCGTGCCTC
453 TGTAAAGTCTAAGTTCGTGCCTC
* * * * * *
3470224 AAATGAAACAAACATGGATTCTAATAACGATCTTCATTCATTTTGTGATTAGGCATTGTAAACAT
1 AAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACAC
* * * *
3470289 ATTATCCTCATTAGGATAAATGATAATGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTT
66 ATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCT
* * * ** *
3470354 ATTTTCCTTAAAATCAAAGTTTATCCCTTAAAAAAGACAAGTATCGATTCTTATAACAG--T-C-
131 ATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCA
* * ** ** * *
3470415 TTC-ATT-AAGATTTGGGAAGCCAAAATGCATTTTCTTCCTTAGGATGCATGACATTGATGCTTT
196 TTCTTTTCATGA-TTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTT
* *
3470478 GGTGTTGCAAGAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
260 GGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
* * * * *
3470543 GACAAACATGAATAGTCACACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTC
325 GACAAACATGAATACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTT
* * * *
3470608 CTCATTAGCATACA-CGATATTGATACTTTGGTTTAGCAAGAAAGGCTTTCTTCCCACCAATTTT
390 CTCATTAGGATACATC-ATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAA-TTT
*
3470672 TGTAAAGTCTAAGTTTGTGCCTC
453 TGTAAAGTCTAAGTTCGTGCCTC
* * ** *
3470695 AAATGAGATAAACATGGATTCTTGTAATGATCTTCATTCATTTTGTGATTATTCACCATAAACAC
1 AAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACAC
* * *
3470760 ATTCTCCTCATTAGGATAAATGATAATGATGATTTTCTTTTGCTTGGAAATATTTTCTTTGCCCT
66 ATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCT
* * * * * * * *
3470825 AATTTCCTTAAAATCTATGTTCATCCCTAAAATAAGACAAGTATCGATTCTAGTAACAGTCTTCA
131 ATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCA
3470890 TTCTTTTCATGATTGGGAA-CCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTT
196 TTCTTTTCATGATTGGGAAGCC-AAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTT
* * * *
3470954 GGTGTCGCAAGAAAAGCTTTTCTTTCCAACGTTTTGGATGGAATCAAAGTTTATCTCTTAAATAA
260 GGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
* * * *
3471019 GACAAACATGAATACTCATACTAATCCCCATTCATTTTAGGATAAGGCACCGTAAACATAGTCCT
325 GACAAACATGAATACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTT
* * * *
3471084 CTCATTAGGATACAT-ATTTTTAGTGCTTTGGTTTTGCAAGAAAGG-TTTTCTTCTCACCAATTT
390 CTCATTAGGATACATCATATTGA-TGCTTTGGTTTCGCAAGAAAGGCTTTT-TTCCCACCAATTT
*
3471147 TGGTAAAGTCTAAGTTCATGCCTC
453 T-GTAAAGTCTAAGTTCGTGCCTC
* * * *
3471171 AAATAAGACAAACATGGATTTTAGTAATGATCTTCATTCATTTTCTGATTAGGCATTATAAACAC
1 AAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACAC
* * * **
3471236 AATCTCCTCATTAGGATAAATGATATTGATGGA-TTTCTTTTGCATGGAAATATTTTTTTTGCTA
66 ATTCTCCTCATTAGGATAAATGATATTGAT-GATTTTCTTTTGCATGGAAATCTTTTCTTTGCCC
** * *
3471300 TATTTTCCTTAAAATCAAAGTTCATCTGTTAAATAAGACAAGAATCGATCCTCGTAATAGTCTCC
130 TATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCC
***
3471365 ATTCTTTTCATGATCAAGAA-CCAAAAACACATTCCCTTCATTAGGATACATGACATAT-ATGCT
195 ATTCTTTTCATGATTGGGAAGCC-AAAACACATTCCCTTCATTAGGATACATGACAT-TGATGCT
* * *
3471428 TTAGTGTCGCAAGAAAAGCTTTTCTTCCCACCGTTTTTGATAGAATCTAAGTTTGTCTCTTAAAT
258 TTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* *
3471493 ACGACAAACATGAATACTCATACTAATCCCCGTTCTTTTTAGGATTAGGCACCATAAACATAGTC
323 AAGACAAACATGAATACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTC
* * *
3471558 TTCTTATTA-GATTACATCATATTGATGCTTTGGTTTCACAAGAAAGGC-TTTTTCCCATCAATT
388 TTCTCATTAGGA-TACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAA-T
* **
3471621 TTTGTAAAGTCTAACTTCGTGAATC
451 TTTGTAAAGTCTAAGTTCGTGCCTC
* * *
3471646 AAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGAACTTTGAACAC
1 AAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACAC
* * * * *
3471711 AGTCTCCTCTTTAGGATAAATGATATTAATGATTTTCTTTTGCATGGTAAA-CTTTTCTTTACCT
66 ATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGG-AAATCTTTTCTTTGCCC
* ** ** *
3471775 TATTTTCCTTAAAATCAATGTTCAAACCTTAAATATAG-CATCCATCGATTCTCATAATAGTCTC
130 TATTTTCCTTAAAATCAAAGTTCATCCCTTAAATA-AGACAAGCATCGATTCTCGTAATAGTCTC
* * * *
3471839 AATTCTTTTCCA-GATTGGGAAGCCAAAACATATTCCCTTTATTAGGATGA-ATGACATTGAAGC
194 CATTCTTTT-CATGATTGGGAAGCCAAAACACATTCCCTTCATTAGGAT-ACATGACATTGATGC
** * * * *
3471902 TTTACTATCGTAAGAAAAGCTTTTCTTTCCACCGTTTTGGATAGAACCAAAGTTTGTCTCTTAAA
257 TTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAA
* * *
3471967 TAAGACAAACATTAATACTCATACTAATCCTCATTCTTTTTAGGATTAGGCACCGTAAACATAGT
322 TAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGT
* * * *
3472032 ATTTTCATTAGGATACA-CAATATT-AGTGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAA
387 CTTCTCATTAGGATACATC-ATATTGA-TGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAA
* *
3472095 GCTTTGTAAAGTCTAAGTTTGTGCCTC
450 -TTTTGTAAAGTCTAAGTTCGTGCCTC
* * * **
3472122 AAATGAGACAAACATGGATTCCCA-TAATGATCTTCATTCATTATGTAATTAAACACTATAAAC
1 AAATGAGACAAACATGGATT-CTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAAC
3472185 CCATAAATAC
Statistics
Matches: 6433, Mismatches: 1307, Indels: 999
0.74 0.15 0.11
Matches are distributed among these distances:
450 51 0.01
451 107 0.02
452 100 0.02
453 25 0.00
455 80 0.01
456 4 0.00
461 1 0.00
462 4 0.00
463 1 0.00
465 1 0.00
466 4 0.00
467 4 0.00
468 1 0.00
469 6 0.00
470 18 0.00
471 412 0.06
472 5 0.00
473 115 0.02
474 288 0.04
475 1193 0.19
476 2129 0.33
477 643 0.10
478 28 0.00
479 435 0.07
480 6 0.00
481 7 0.00
482 4 0.00
483 12 0.00
484 1 0.00
485 1 0.00
486 7 0.00
487 7 0.00
488 2 0.00
489 1 0.00
490 9 0.00
491 14 0.00
492 16 0.00
493 9 0.00
494 2 0.00
495 5 0.00
496 5 0.00
497 2 0.00
499 6 0.00
500 14 0.00
501 35 0.01
502 46 0.01
503 21 0.00
504 17 0.00
505 13 0.00
506 25 0.00
507 18 0.00
508 8 0.00
509 10 0.00
510 4 0.00
511 13 0.00
512 11 0.00
513 16 0.00
514 15 0.00
515 8 0.00
516 30 0.00
517 19 0.00
518 23 0.00
519 27 0.00
520 19 0.00
521 22 0.00
522 34 0.01
523 36 0.01
524 29 0.00
525 33 0.01
526 20 0.00
527 12 0.00
528 3 0.00
529 4 0.00
530 15 0.00
531 20 0.00
532 6 0.00
533 7 0.00
535 4 0.00
536 1 0.00
537 18 0.00
538 6 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (475 bp):
AAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACAC
ATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCT
ATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCA
TTCTTTTCATGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTG
GTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
ACAAACATGAATACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTC
TCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTGT
AAAGTCTAAGTTCGTGCCTC
Found at i:3470146 original size:159 final size:157
Alignment explanation
Indices: 3468405--3472083 Score: 1142
Period size: 159 Copynumber: 23.3 Consensus size: 157
3468395 CGCATTCTTT
* * * * *
3468405 TCATTAGGATA-ATTGAAATTGATACTTTGGTGT-CACAGGAAAAGCTTTTCTTTCCACCGTTTT
1 TCATTAGGATACA-TGATATTGATGCTTTGGTTTGCA-A-GAAAAGCTTTTCTTTCCATCATTTT
* * * * * * *
3468468 TTATAGAATCATAGTTTGCCACTTAAATACGACAAACATGTATAGT--TA-T-A--CT-ATTCTT
63 TGATA-AATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCTCATTCTT
** ** *
3468526 TTCAAGATTAGGCACCATAAACATGGTCTTC
127 TTCTGGATTAGGCACCATAAACATATTCTCC
* * * * * *
3468557 TCATAAGGATACATCATATAGATGCTTTGGGGTTGCAAGAAAAGCTTTTCTTTCCACCGTTTTTG
1 TCATTAGGATACATGATATTGATGCTTT-GGTTTGCAAGAAAAGCTTTTCTTTCCATCATTTTTG
* * * * * *
3468622 ATAGAACCAAAGTTTATCTATTAAATAAGACAAACATAAACTA-TCATACGAAGACC-CATTCTT
65 ATA-AATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA-TACTCATACTAA-TCCTCATTCTT
* *
3468685 TT-TAGGATTAGGCACCATAAACATAGTCTTC
127 TTCT-GGATTAGGCACCATAAACATATTCTCC
* * * * *
3468716 TCATTAGGACACACGATATTGATGCTTTGGTTTTGCAAGAGAGGCTTTATC---CCGATCAAGTT
1 TCATTAGGATACATGATATTGATGCTTTGG-TTTGCAAGAAAAGCTTT-TCTTTCC-ATC-ATTT
* ** * * * * *
3468778 TTGA-AAAGTCTAAGTTCATG-C-CTCGAATGAGACAAACAT-AGATTCT-AGTAATGATCTTCA
62 TTGATAAA-TCAAAGTT--TGTCTCTTAAATAAGACAAACATGA-ATACTCA-TACTAATCCTCA
* * * *
3468838 TTCATTTT-GGGATTAGGCACTAGAAACACATTCTCC
122 TTC-TTTTCTGGATTAGGCACCATAAACATATTCTCC
* * * ** * * ** **
3468874 TCATTAGGATAAATGATATTTATGATTTTTTTTGCATGGAAATATTTTCTTTGCCAT-ATTTTCC
1 TCATTAGGATACATGATATTGATGCTTTGGTTTGCAAGAAAAGCTTTTCTTT-CCATCATTTTTG
* ** * * * * * * * *
3468938 TTAAATTCAAAGTTCATCCCTTATATAAGACAAGCATCG-ATTCCCGTAAC-AGT-CTCCATTTT
65 ATAAA-TCAAAGTTTGTCTCTTAAATAAGACAAACAT-GAATACTCAT-ACTAATCCT-CATTCT
** * * ***
3469000 TTTCAAGATTGGGAAGCCA-AAATGCATTC-CC
126 TTTCTGGATTAGGCA-CCATAAACATATTCTCC
* * * * * *
3469031 TTCATCAGGATA-ATTGAAATTGATACTTTGGTGT-CACAGGAAAAGCTTTTCTTTCCACCGTTT
1 -TCATTAGGATACA-TGATATTGATGCTTTGGTTTGCA-A-GAAAAGCTTTTCTTTCCATCATTT
* * * * * * *
3469094 TTGATAGAATCATAGTTTGTCTATT-AATACGACAAACATGTATCCTCATACTAATCCCCGTTCT
62 TTGATA-AATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCTCATTCT
*** *** *
3469158 TTTCAATATTAGGCACCATAAACATGGGCTTC
126 TTTCTGGATTAGGCACCATAAACATATTCTCC
* * * ** * * *
3469190 TCATAAGGATACATCATATTGATGCTTCGGATTCACAAGAAAAGCTTTT-TTCCCACCAGTTTTG
1 TCATTAGGATACATGATATTGATGCTTTGG-TTTGCAAGAAAAGCTTTTCTTTCCATCATTTTTG
* * * * * * * * * *
3469254 -TCAAAGTCTAAGTTCATG-C-CTCAAATGAGACGAGCATGGATTCT-AGTAATGATCTTCATTC
65 AT-AAA-TCAAAGTT--TGTCTCTTAAATAAGACAAACATGAATACTCA-TACTAATCCTCATTC
* *
3469315 ATTT-TGTGATTAGGCACTC-TAAACACATTCTCC
125 TTTTCTG-GATTAGGCAC-CATAAACATATTCTCC
** * * ** * * * * *
3469348 TTTTTAGGATAAATGATATT-ATGATTATATTTTGCATGGAAATCTTGTCTTTGCCCT-ATTTTC
1 TCATTAGGATACATGATATTGATGCTT-TGGTTTGCAAGAAAAGCTTTTCTTT-CCATCATTTT-
* * * * * * *
3469411 CTTA-AAATCAAAGTTTATCCCTTAAATAAG-CAAGCATCG-ATTCTCATAATAGTAT-C-CAAT
63 -TGATAAATCAAAGTTTGTCTCTTAAATAAGACAAACAT-GAATACTCATACTA--ATCCTCATT
** * * * *
3469471 CTTTTCAAGATTGGGAAGCCA-AATCACATTC-CC
124 CTTTTCTGGATTAGGCA-CCATAAACATATTCTCC
* * *
3469504 TTTC-TTAGGATACATGACATTGATGCTTTGGTGTTCCAAGAAAAGCTTTTCTTTCCATCAGTTT
1 --TCATTAGGATACATGATATTGATGCTTTGGT-TTGCAAGAAAAGCTTTTCTTTCCATCATTTT
* * * *
3469568 TGATAGAATCAAAGTTTATCTCTTAAATAAGATAAACATGAATAGTCATACTAATCCCCATTCTT
63 TGATA-AATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCTCATTCTT
* * *
3469633 TTCAGGATTAGGCACCATAAACATAGTCTTC
127 TTCTGGATTAGGCACCATAAACATATTCTCC
** * * * * * * *
3469664 TCATTAGGATACACAATAATGATACTTTGGTTTCGC--GAGAGGCTTTATC--CCCAGCAAGTTT
1 TCATTAGGATACATGATATTGATGCTTTGGTTT-GCAAGAAAAGCTTT-TCTTTCCATC-ATTTT
* * * * * * *
3469725 TG-TAAAGTCTAAAG-TCGTGC-CTCAAATGAGACAAACATGGATTCT-AGTAAC-GATCTTCAT
63 TGATAAA-TC-AAAGTTTGT-CTCTTAAATAAGACAAACATGAATACTCA-T-ACTAATCCTCAT
* * * *
3469785 TCATTTTAT-GATTAGGCACTATAAACACATTATCC
123 TC-TTTTCTGGATTAGGCACCATAAACATATTCTCC
* * * ** * * * * *
3469820 TCATTAGGATAAATGATAATGATGATTTTCTTTGGCATGGAAATCTTTTCTTTTCCCTAATTTCC
1 TCATTAGGATACATGATATTGATGCTTTGGTTT-GCAAGAAAAGCTTTTC-TTTCCATCATTT--
** * * * * *
3469885 TT-A-AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCAATTCTCATAAC-AGTCGC-CATTC
62 TTGATAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAT-ACTAATC-CTCATTC
** * * * ** *
3469946 TTTTCAAGATTGGGAAGCCA-AATCGCAATC-CC
125 TTTTCTGGATTAGGCA-CCATAAACATATTCTCC
* *
3469978 TTTC-TTAGGATACATGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCCTTCCATCATTTT
1 --TCATTAGGATACATGATATTGATGCTTTGGT-TTGCAAGAAAAGCTTTTCTTTCCATCATTTT
* *
3470042 TGATAGAATCAAAGTTTGTCTCTTGAATAAGACAAACATGAATAGTCATACTAATCCTCATTCTT
63 TGATA-AATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCTCATTCTT
* *
3470107 TTCTGGATTAGGCACCATAAACATAGTCTTC
127 TTCTGGATTAGGCACCATAAACATATTCTCC
* ** * * * *
3470138 TCACTAGGATACATGATATTGATGCTTTCATTTCGCAAGAAAGGCTTTATC--CCCAGCAAGTTT
1 TCATTAGGATACATGATATTGATGCTTTGGTTT-GCAAGAAAAGCTTT-TCTTTCCATC-ATTTT
* * * * * * *
3470201 TG-TAAAGT-ATAAGTTCGTGC-CTCAAATGAA-ACAAACATGGATTCTAATAAC-GATCTTCAT
63 TGATAAA-TCA-AAGTTTGT-CTCTTAAAT-AAGACAAACATGAATACTCAT-ACTAATCCTCAT
* *** *
3470261 TCATTT-TGTGATTAGGCATTGTAAACATATTATCC
123 TCTTTTCTG-GATTAGGCACCATAAACATATTCTCC
* * * ** * * * *
3470296 TCATTAGGATAAATGATAATGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCC-TTATTTTC
1 TCATTAGGATACATGATATTGATG-CTTTGGTTTGCAAGAAAAGCTTTTCTTT-CCATCATTTT-
* * * * ** * *
3470360 CTTA-AAATCAAAGTTTATCCCTTAAAAAAGACAAGTATCG-AT--TCTTA-TAA-CAGTC-TTC
63 -TGATAAATCAAAGTTTGTCTCTTAAATAAGACAAACAT-GAATACTCATACTAATC-CTCATTC
* ** * * *
3470418 -ATT-AAGATTTGGGAAGCCA-AAATGCAT-TT-TCT
125 TTTTCTGGA-TTAGGCA-CCATAAA--CATATTCTCC
* * * *
3470450 TCCTTAGGATGCATGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCATCGTTTTTG
1 TCATTAGGATACATGATATTGATGCTTTGGT-TTGCAAGAAAAGCTTTTCTTTCCATCATTTTTG
* * *
3470515 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACACTAATCCCCATTCTTTT
65 ATA-AATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCTCATTCTTTT
** *
3470580 CAAGATTAGGCACCATAAACATAGTCTCC
129 CTGGATTAGGCACCATAAACATATTCTCC
* * * * * *
3470609 TCATTAGCATACACGATATTGATACTTTGGTTTAGCAAGAAAGGC-TTTCTTCCCACCAATTTTT
1 TCATTAGGATACATGATATTGATGCTTTGGTTT-GCAAGAAAAGCTTTTCTTTCCATC-ATTTTT
* * * * * * ** * * * *
3470673 G-TAAAGTCTAAGTTTGTGC-CTCAAATGAGATAAACATGGATTCTTGTAATGATCTTCATTCAT
64 GATAAA-TCAAAGTTTGT-CTCTTAAATAAGACAAACATGAATACTCATACTAATCCTCATTCTT
** *
3470736 TT-TGTGATTATTCACCATAAACACATTCTCC
127 TTCTG-GATTAGGCACCATAAACATATTCTCC
* * * ** ** * ** * *
3470767 TCATTAGGATAAATGATAATGATGATTTTCTTTTGCTTGGAAATATTTTCTTTGCCCTAATTTCC
1 TCATTAGGATACATGATATTGATG-CTTTGGTTTGCAAGAAAAGCTTTTCTTT-CCATCATTT--
* * ** * * ** * * *
3470832 TT-A-AAATCTATGTTCATCCCTAAAATAAGACAAGTATCG-ATTCT-AGTAAC-AGTCTTCATT
62 TTGATAAATCAAAGTTTGTCTCTTAAATAAGACAAACAT-GAATACTCA-T-ACTAATCCTCATT
* * * *
3470892 CTTTTCAT-GATTGGGAACCAAAAACACATTC-CC
124 CTTTTC-TGGATTAGGCACCATAAACATATTCTCC
* * * * *
3470925 TTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAACGTTTTG
1 -TCATTAGGATACATGATATTGATGCTTTGGT-TTGCAAGAAAAGCTTTTCTTTCCATCATTTTT
* * *
3470990 GATGGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCATT
64 GAT-AAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCTCATTC-TT
* * * *
3471055 TT-AGGATAAGGCACCGTAAACATAGTC-CTC
127 TTCTGGATTAGGCACCATAAACATATTCTC-C
* * * * *
3471085 TCATTAGGATACAT-ATTTTTAGTGCTTTGGTTTTGCAAG-AAAGGTTTTC-TTCTCACCAATTT
1 TCATTAGGATACATGATATTGA-TGCTTTGG-TTTGCAAGAAAAGCTTTTCTTTC-CATCATTTT
* * * * * * * * *
3471147 TGGTAAAGTCTAAGTTCATG-C-CTCAAATAAGACAAACATGGAT-TTTAGTAATGATCTTCATT
63 TGATAAA-TCAAAGTT--TGTCTCTTAAATAAGACAAACATGAATACTCA-TACTAATCCTCATT
** * *
3471209 CATTTTCT-GATTAGGCATTATAAACACAATCTCC
124 C-TTTTCTGGATTAGGCACCATAAACATATTCTCC
* * ** * * ** * *
3471243 TCATTAGGATAAATGATATTGATGGATTTCTTTTGCATGGAAATATTTTTTTTGCTAT-ATTTTC
1 TCATTAGGATACATGATATTGAT-GCTTTGGTTTGCAAGAAAAGCTTTTCTTT-CCATCATTTT-
* ** * * * * *
3471307 CTTA-AAATCAAAGTTCATCTGTTAAATAAGACAAGA-ATCG-ATCCTCGTAATAGT-CTCCATT
63 -TGATAAATCAAAGTTTGTCTCTTAAATAAGACAA-ACAT-GAATACTCATACTAATCCT-CATT
* * * * *
3471368 CTTTTCAT-GATCAAGAACCAAAAACACATTC-CC
124 CTTTTC-TGGATTAGGCACCATAAACATATTCTCC
* * * * * *
3471401 TTCATTAGGATACATGACATAT-ATGCTTTAGTGTCGCAAGAAAAGCTTTTCTTCCCACCGTTTT
1 -TCATTAGGATACATGATAT-TGATGCTTTGGT-TTGCAAGAAAAGCTTTTCTTTCCATCATTTT
* * * *
3471465 TGATAGAATCTAAGTTTGTCTCTTAAATACGACAAACATGAATACTCATACTAATCCCCGTTCTT
63 TGATA-AATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCTCATTCTT
* *
3471530 TT-TAGGATTAGGCACCATAAACATAGTCTTC
127 TTCT-GGATTAGGCACCATAAACATATTCTCC
* * * * *
3471561 TTATTA-GATTACATCATATTGATGCTTTGGTTTCACAAGAAAGGC-TTT-TTCCCATCAATTTT
1 TCATTAGGA-TACATGATATTGATGCTTTGGTTT-GCAAGAAAAGCTTTTCTTTCCATC-ATTTT
* * * *** * * * * * * * *
3471623 TG-TAAAGTCTAACTTCGTGAATCAAATGAGACAAACATGGATTCT-AGTAATGATCTTCATTCA
63 TGATAAA-TCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCA-TACTAATCCTCATTCT
* ** * * *
3471686 TTT-TGTGATTAGGAACTTTGAACACAGTCTCC
126 TTTCTG-GATTAGGCACCATAAACATATTCTCC
* * * * ** * * *
3471718 TCTTTAGGATAAATGATATTAATGATTTTCTTTTGCATGGTAAA-CTTTTCTTTACC-TTATTTT
1 TCATTAGGATACATGATATTGATG-CTTTGGTTTGCA-AGAAAAGCTTTTCTTT-CCATCATTTT
* * *** ** * * *
3471781 CCTTA-AAATCAATGTTCAAAC-CTTAAATATAG-CATCCATCG-ATTCTCATAATAGT-CTCAA
63 --TGATAAATCAAAGTT-TGTCTCTTAAATA-AGACAAACAT-GAATACTCATACTAATCCTC-A
** * *
3471841 TTCTTTTCCAGATTGGGAAGCCA-AAACATATTC-CC
122 TTCTTTTCTGGATTAGGCA-CCATAAACATATTCTCC
* * * ** * * * *
3471876 TTTATTAGGATGA-ATGACATTGAAGCTTTACTATCGTAAGAAAAGCTTTTCTTTCCACCGTTTT
1 -TCATTAGGAT-ACATGATATTGATGCTTTGGT-TTGCAAGAAAAGCTTTTCTTTCCATCATTTT
* * *
3471940 GGATAGAACCAAAGTTTGTCTCTTAAATAAGACAAACATTAATACTCATACTAATCCTCATTCTT
63 TGATA-AATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCTCATTCTT
* * * **
3472005 TT-TAGGATTAGGCACCGTAAACATAGTATTT
127 TTCT-GGATTAGGCACCATAAACATATTCTCC
** *
3472036 TCATTAGGATACACAATATT-AGTGCTTTGGTTTTGCAAGAAAGGCTTT
1 TCATTAGGATACATGATATTGA-TGCTTTGG-TTTGCAAGAAAAGCTTT
3472084 CTTCCCACCA
Statistics
Matches: 2535, Mismatches: 724, Indels: 529
0.67 0.19 0.14
Matches are distributed among these distances:
152 81 0.03
153 17 0.01
154 88 0.03
155 9 0.00
156 115 0.05
157 290 0.11
158 814 0.32
159 1033 0.41
160 81 0.03
161 7 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (157 bp):
TCATTAGGATACATGATATTGATGCTTTGGTTTGCAAGAAAAGCTTTTCTTTCCATCATTTTTGA
TAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCTCATTCTTTTCT
GGATTAGGCACCATAAACATATTCTCC
Found at i:3475031 original size:42 final size:42
Alignment explanation
Indices: 3474970--3475088 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
3474960 TAGCCCTCAA
* *
3474970 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
3475012 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACATG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
3475054 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
3475089 GAGAGAAGAA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.43, C:0.03, G:0.45, T:0.09
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:3482945 original size:476 final size:476
Alignment explanation
Indices: 3479567--3497554 Score: 15480
Period size: 476 Copynumber: 37.5 Consensus size: 476
3479557 CTCCTAAATA
**
3479567 AAACATAGTCTTCTCATTAGGATACATCATATTGACACTTTGGTTTCGCAAGAAAGGCTTTTTTC
1 AAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTC
** *
3479632 TCACCAATTTTTGTAAAGTCTAAGTTTC-TATCTCAAATGACACAAACATGGATTCTAGTAATGA
66 TCACCAATTTTTGTAAAGTCTAAG-TTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGA
* * * **
3479696 TCTTCAGTCATTTTGTGATTAGCCACTATTAACACATTCTATTCATTAGGATAAATGATATTGAT
130 TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGAT
** * * **
3479761 GGCTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTTATATGTTA
195 GATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACCTTA
* * * *
3479826 AATAAGACAAGCATCGATCCTCATAATAGCCTCCATTCTTTTCAAGATTTGGAAGCCAAAACACA
260 AATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACA
* * * *
3479891 TTCCCTTCATTAGGATGCATGACATTGATGCTTTGGTATTGTAAGAAAAGCTTTTCTTTCCATCG
325 TTCCCTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCG
* * * * * * *
3479956 TTTTTGATAAAATCATAGTTTGCCTCTTAAATACGACAAACATGAATACTCACACTGATCCCTAT
390 TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCAT
*
3480021 TCTTTTCTA-GATTAGGCACCGT
455 TCTTTTC-AGGATTAGGCACCAT
* *
3480043 AAACATTGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGAAAGAAAGGCTTTTTTC
1 AAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTC
* * * * * * *
3480108 CCACCAATTTTTATAAAGTCTAAGTTCGAGCCTCAAAAGACACAAACATGGATTCTGGTGATGAT
66 TCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGAT
* * * * *
3480173 CTTCATTCATTTTGGGATTAGGCACTAGAAACACTTTCTTCTCACTAGGATAAATGATATTGATG
131 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATG
* * * * *
3480238 ATTTTTTTTTTTACTTAGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTT
196 A--TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACCTT
* * * * * * *
3480303 AAATAAGACAGGCAACAATTATTGTAATAGACTCCATTCTTTTTAAGATTGGGAAGCCAAAACAC
259 AAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAGCC-AAA-AC
* * * * * * * * ** *
3480368 ACATTCCTTTCATGAGGATGCCTAACATTGATGCTTTAGTGTCACAGGAAATGCTTAGCTTCCCA
322 ACATTCCCTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA
** ** * * * * * *
3480433 -TTTTTTTGATAGAATTGAAGTTTGTCTCTTAAATAAAATAAACATGAAAAGTCAAACT-ATCCT
387 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCC
* *
3480496 TATT-TTTTCAGGATTAGGCAACAT
452 CATTCTTTTCAGGATTAGGCACCAT
* * * *
3480520 AAACACAGTCTTCTCAATATGATACATCATATTGATGCTTTGGTTTTGCAAGAACA-GCTTTTTT
1 AAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAA-AGGCTTTTTT
* * ** * * *
3480584 CTTAACTAATTTTT-TAAAGTCTAAGTTTATGCCTTAGATGAGATAAACATGGATTCTAGTAATG
65 C-TCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATG
* * * **
3480648 AGCTTCTTTCATTTTGTGATTAGGCACTATAAACACATGCTCCTCACAAGGATAAATGATATTGA
129 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGA
* * * *
3480713 TTATTTTCTTTTGCATGGAAATCTTTTCCTTGCCCTATTTTCCATAAAATCAATGTTCATACCTT
194 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACCTT
* * * *
3480778 AAATTAGACAAGCATCGATTCTCATAATAGTCTCCATTC-TTTGAAGGATTGGGAGGCCAAAACA
259 AAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAA-GATTGGGAAGCCAAAACA
* * * * * *
3480842 CATTCTCTTCATTAGGATGCATGACATTAAAGCTTTGGTGTTGCAAGAAAAGATTTACTTTCCAC
323 CATTCCCTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAC
** * * * * *
3480907 CGTTTTTGGCACAATCAAAGTTTATCTCCTAAATATGACAAA-ATGAATACTCATACTAATCCCT
388 CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCC
*
3480971 GTTCTTTTCAGGATTAGGCACCAT
453 ATTCTTTTCAGGATTAGGCACCAT
* * * *
3480995 AAACACAGTCTTCTCATTAAGATACAACATATT-ATTGCTTTGGTTTTGCAAGAAAGGCTTTTTT
1 AAACATAGTCTTCTCATTAGGATACATCATATTGA-TGCTTTGGTTTCGCAAGAAAGGCTTTTTT
* * * ** * *
3481059 CTTACCAAATTTTGTAAAGTGTAAGTTAATGCCTCATATGAGACAAACATGGATTCTAATAATGA
65 CTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGA
* * * * *
3481124 TCTTCATTCATTTTATGGTTAGGCACTATCAACACATTCTACTCATTAGGATAAATGATATTAAT
130 TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGAT
* * * * * *
3481189 GGTTTTTTTTTTTTGTAGGGAAACCTTTTCTTTGCCCTATTTTCCTTCAAATCAAAGTTCATACC
195 -G--ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACC
* * * * * *
3481254 TTAAATAAGA-TAG----G-----C-AAATCGTCTCCACTCTTTTCGAGATTAGGAAGCCAAAAC
257 TTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAGCC-AAA-
* * *
3481308 ACACAATCCTTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTACTTTC
320 ACACATTCCCTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC
** * * * *
3481373 CACCGTTTCAGACACAATCAAACTTTGTCTCTTAAATACA-ACAAACATGAATATTCATACTAAT
385 CACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA-AGACAAACATGAATACTCATACTAAT
* * *
3481437 CCTCGTTCTTTTCAAGATTAGGCACCAT
449 CCCCATTCTTTTCAGGATTAGGCACCAT
* * *
3481465 AAACATAGTCTTCTCATTAAGATAAATCATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTTTC
1 AAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTC
* *
3481530 TCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGACTCTAGTAATGAT
66 TCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGAT
* * * * *
3481595 CATCATTCATTTTTGTGATTAGGCACTATACACACATTCTCCTCATAAGGACAAAAGATATTGAT
131 CTTCATTCA-TTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGAT
* * * * **
3481660 AATTTTCGTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTTAAATCAAAGTTCATATGTTA
195 GATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACCTTA
* * * *
3481725 AATGAGACAAGCATCGATTCTCATACTAGTCTCCATTCTTTTCAAGATTTGGAAGCCAAAACACA
260 AATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACA
** ** * * *
3481790 TTCCCTTCATTAGGATGCATGACATTGACACTTTATTGTCACAAAAAAAGCTTTTCTTTCCACCA
325 TTCCCTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCG
* * * *
3481855 TTTTTTACT-GAATCAAAGTTTATCTCTTAAATAAGACAAATATGAATACTCATACTAATCCCCC
390 TTTTTGA-TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCA
* *
3481919 TTATTTTCAGGATTAGGCAGCAT
454 TTCTTTTCAGGATTAGGCACCAT
* * * *
3481942 AAACATAGTTTTCTCATTATGATACATCATATTGATGCATTGGTTTCGCAAGAAAGGTTTTTTTC
1 AAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTC
* *
3482007 TC-CCAAATTTTTGTAAAGTCTAAGTTCGTGACTCAAATTAGACAAACATGGATTCTAGTAATGA
66 TCACC-AATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGA
* * *
3482071 TCTTCAATCATTTTGTGATTAGGCACTACAAATACATTCTCCTCATTAGGATAAATGATA-T--T
130 TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGAT
* * *
3482133 GATTTT-TTTTGCATGGAAATCTTTTCTTTACCCTATTTCCCTTAAAATCAAAGTTTATACCTTA
195 GATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACCTTA
* * * * *
3482197 AATAAGACAAGCAACGATTCTCGTAATAGTCTCTATTATTCTCAAGATTGGTAAGCCAAAACACA
260 AATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACA
* * * * * *
3482262 TTTTCCTTTCATTAAGATGCATGACATTGATGCTTTAGTGCCGCAAGAAAAGCTTTGCTTTCTAC
325 --TTCCCTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAC
* * * * *
3482327 CGTTTCTAATAGAATCAAAGTTTGTTTCTTAAATATGACAAACATTAATACTCATACTAATCCCC
388 CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCC
* * *
3482392 ATTCTATTCAAGATTAGACACCAT
453 ATTCTTTTCAGGATTAGGCACCAT
* *
3482416 AAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAAGCCTTTTTC
1 AAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTC
* * * * * *
3482481 CCACCAATTTTTGTAAAGTCTAAGTCCGGGCCTCAAATGAGATAAACATGGATTCTGGGAATGAT
66 TCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGAT
* * * *
3482546 CCTCATTCATTTTGGGATTAGGTACTATAAACACATTCTCCTCA-TAGGATAAATGATAGTGATG
131 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATG
* *
3482610 ATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAATGTTCATACCTTAA
196 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACCTTAA
* * * * *
3482675 ATAAGACAAGCATC-ACTTCTCGTTATAGTCTCCATTCTTTCCCAGATTGGGAGGCCAAAACATA
261 ATAAGACAAGCATCGA-TTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACA
** * * * * * *
3482739 TTCCCTTCATTAGGATGCATGACAACGAAGCTTTTGTGTTGTAAGAAAAACTTTTCTTTCCACCA
325 TTCCCTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCG
* * *
3482804 TTTTTGGATAGAATCAGAGTTTGTCTCTAAAATAAGACAAACATGAATACTCATACTAATCCCTA
390 TTTTT-GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCA
* *
3482869 TTCCTTTT-GGGATTAGGCAGCAT
454 TT-CTTTTCAGGATTAGGCACCAT
* * * *
3482892 AAACATTGTCTTCTCATTAGGGTACA-CGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTT
1 AAACATAGTCTTCTCATTAGGATACATC-ATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTT
* * *
3482956 CCCACCAATTTTTGTGAAGTCTAAGTTCGTGCCTCAAATTAGACAAACATGGATTCTAGTAATGA
65 CTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGA
*
3483021 TCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGAT
130 TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGAT
* * * *
3483086 --TTTT-TTTTGCATTGAAATCTTTTCTTTGCCCTATTTTCCTTGAAATCAAAGTTTATGCCTTA
195 GATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACCTTA
* * ** *
3483148 AATAAGA-TAGACAACGATTCTCGTAATAGTCTCTGTTCTTTTCAAGATTGGTAAGCCAAAACAC
260 AATAAGACAAG-CATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACAC
* ** * * *
3483212 ACTTTCCTTTCATTAGGATATATGACATTGATGCTTTGGTGCCGTAAGAAAAGCTTTGCTTTCCA
324 A--TTCCCTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA
* * * * * *
3483277 CTGTTTCTGA-AGAACCAATGTTTGTCTCTTAAATATGACAAACATTAATACTCATACTAATCCC
387 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCC
* * * *
3483341 CCTTCTTTTCAAGATTAGACGCCAT
452 CATTCTTTTCAGGATTAGGCACCAT
3483366 AAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTC
1 AAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTC
* ** * *
3483431 CCACCAATTTTTGTAAAGTCTAAGTTCAAGCCTCAAATGAGACAAACATGGATTCTAGGAATAAT
66 TCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGAT
* * *
3483496 CTTCATTCATTTTGGGATTAGGTACTATAAAAACATTCTCCTCATTAGGATAAATGATAGTT-AT
131 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA-TTGAT
* * * * *
3483560 GATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTGTTTTCCTTAAAATCAATGTTGATAACTTA
195 GATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACCTTA
* * * *
3483625 AATAAGACAA-CATCAATTCTTGTAATAGTCTCCATTCTTTTCAAAATTGGGAGGCCAAAACACA
260 AATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACA
* *** * * * *
3483689 TTCCCTTCATTGGGATGCATGACAACAAAGCTTTGGTGTCGTAAGAAAAACTTTTCTGTCCACCG
325 TTCCCTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCG
*
3483754 TTTTTTGATAGAATCAAAGTTTGTCTCTAAAATAAG--AAACATGAATACTCATACTAATCCCCA
390 -TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCA
* * **
3483817 TTATTTTTAGGATTAGGCAGTAT
454 TTCTTTTCAGGATTAGGCACCAT
* * * *
3483840 AAACATAGTCTTCTCATTAGGGTACATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTC
1 AAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTC
* * * ** *
3483905 CCACCAATTTTTCTAAAGTCTAAATTCGTGCCTCAAAAAAGACAAACATGGATTCTAGTAATGCT
66 TCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGAT
* * *
3483970 CTTTATTCATTTTGTAATTAGGCACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATG
131 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATG
** * * *
3484035 ATTTTCTTTTGCATAAAAATCTTTTCTCTGCCCTATTTTCCTTTAAATCAAAGTTCATACGTTAA
196 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACCTTAA
*
3484100 ATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTTAAGATTGGGAA-CCAAAAGCACA
261 ATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAA-CACA
* * * * *
3484164 TTCCCTTCATTAGGATACATGACATTGATGTTTTTGTGTCGCAAGAAAAGTTTTTCTTTCCACCA
325 TTCCCTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCG
* * * * *
3484229 TTTTTGATAGAATCAAAATTTATGTCTTAAATAAGATAAACAAGAATACTC-TAACTAATCCCCA
390 TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAT-ACTAATCCCCA
* ** *
3484293 TTCCTTTCAGGATTAGATATCAT
454 TTCTTTTCAGGATTAGGCACCAT
** ** * *
3484316 AAACATA-TCTAGTCATTAGGATACATCATATTGATGCTTAAGTTTCACATGAAAGGCTTTTTTT
1 AAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTTTT
*
3484380 CTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGAAAAACATGGATTCTAGTAATGA
65 CTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGA
* ** * * *
3484445 TCTTCATTTATTTCATGATTAGGCACTTTAAACACATTTTTCTCATTAGGATAAATGATATTGAT
130 TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGAT
* * *
3484510 TATTTTCTTTTGCATGGAAATCATTTCTTTGCCCTATTTTCCTTCAAATCAAAGTTCATACCTTA
195 GATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACCTTA
* * **
3484575 AATAAGATAAGCAAT-GATTCTCGTCATAGTCTCCATTCTTTTCAAGATTACGAAGCCAAAACAC
260 AATAAGACAAGC-ATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAGCC-AAA-AC
* * * * ** *
3484639 ACAATCCTTTCATTAGCATGCATGGCATTGATGCTTTAATGCCGCAAGAAAAGCTTTTCTTTCCA
322 ACATTCCCTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA
* * * **
3484704 CCGTTTCTAATGGAATCAAAGTTTGTCTCTTAAATTTGACAAACATGAATACTCATACTTAATCC
387 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATAC-TAATCC
* * *
3484769 CCTTTTTTTTTTCATGATTAGGCACCAT
451 CC--ATTCTTTTCAGGATTAGGCACCAT
* * * ***
3484797 AAACATAGTCTTCTTATTAGGATAAATCATATTGATTCTTCAATTT-GACAAGAAAGGCTTTTTT
1 AAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCG-CAAGAAAGGCTTTTTT
* * * *
3484861 CTCCCCAATTTTTGTAAAGTCTATGTTCGTGCCTCAAAT-ATGATAAACCTGGATTCTAGTAATG
65 CTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGA-GACAAACATGGATTCTAGTAATG
* * * *
3484925 ATCATT-ATTAATTTTGTGATTGGGCACTACAAACACATTCTCCTCTTTAGGATAAATGATATTG
129 ATC-TTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTG
* * * *
3484989 ATTATTTTCTTTTGTATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATGAAAGTTCATACCT
193 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACCT
* * * * * * **
3485054 TAAATAAGACAGGCAACGATTCTCGTAATAGTCTCCATTCAGTTT-AAAAATGGGTAGTGAAAAC
258 TAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTC-TTTTCAAGATTGGGAAG-CCAAA-
* * * * * * *
3485118 ACACATTCCTTTCATGAGGATGCAAGACATTGATGCTTTGGTGACACAAGAAAAGGTTTGCTTTC
320 ACACATTCCCTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC
* * * * * * *
3485183 CACCGTTTCTGGTAGAATTAAAGTTTGTCT-TGTAAATAAGATAAACATGAAAAGTCAAACTAAT
385 CACCGTTTTTGATAGAATCAAAGTTTGTCTCT-TAAATAAGACAAACATGAATACTCATACTAAT
*
3485247 CCCCA-T-TTTTCAGGATTAGGCAGCAT
449 CCCCATTCTTTTCAGGATTAGGCACCAT
* * * *
3485273 AAACATAGTCTTCTCAATATGATACATCATATTGATGCTTTAGTTTCGCAAGAAAAGCTTTTTTC
1 AAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTC
* * * * *
3485338 TCACCGATTTTTGTAAAGTTTAAATTCGTGCTTCAAATAAGACAAACATGGATTCTAGTAATGAT
66 TCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGAT
* * * * *
3485403 CTTCCTTTATTTTGTGACTAGGCACTATAAACATATTCTCCTCATTAAGATAAATGATATTGATG
131 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATG
* ** * *
3485468 ATTTTCTTTTGCATGGAAATCTTTTCTTTTCCCTATTTTTGTTAAAATCAATGCTCAT-CCTTTA
196 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACC-TTA
* * *
3485532 AATAAGACAAACATCGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAA-CCAAAAACAC
260 AATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAGCC-AAAACAC
* * * * * *
3485596 ATTCCGTTCAATAGGATACCA-GACATTGACGCTTTGGTATCGCAAGAAAAGCTTTTCTTTCCAA
324 ATTCCCTTCATTAGGAT-GCATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAC
* **
3485660 CATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAACAATACTCCA-ACTAATCCC
388 CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACT-CATACTAATCCC
*
3485724 CATT-TTTCTCTA-GATTAGACACCAT
452 CATTCTTT-TC-AGGATTAGGCACCAT
* * * *
3485749 AAACATAGTCCTCTCATTAGGATACATCATATTGATGCTTTGGCTTCACATGAAAGGCTTTTTTT
1 AAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTTTT
*
3485814 CTCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGATTCTAGTAATGA
65 CTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGA
* * *
3485879 TCTTCATTCATTTTGTGATTAGGCACCATAAACACATTCTCCTCACTAGAATAAATGATATTGAT
130 TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGAT
* * **
3485944 GATTTTCTTCTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATATGTTA
195 GATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACCTTA
* * * * * *
3486009 AATAATACAAGCATTGATTCTCATAATAGTCTCCATTCTTTTCAAGATTTGAAAGCCAAAACACG
260 AATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACA
* * * * * * *
3486074 TTCCCTTCATTAGGATCCATGACATTGAGGCTTTGGGGTCGCGAGAGAAGCATTTCTTTCCACTA
325 TTCCCTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAC-C
* * *
3486139 TTTTTTGATAGAATGAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCTCA
389 GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCA
* **
3486204 TTATTTTCAGGATTAGGCAGTAT
454 TTCTTTTCAGGATTAGGCACCAT
* ** * *
3486227 AAACATAGTCTTCTCAATCTGATACATCATCTTGATTCTTTGGTTTCGCAAGAAAGGC-TTTTTC
1 AAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTC
* * * ** * *
3486291 TCAACAATTTTTGCAAAGTCTAAGTTCGTGCCTTAAATGAGACAAACATCAATTATAGTATTGAT
66 TCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGAT
* *
3486356 CTTCATTCATTTTGTGATTAGACACTATAAACACATTCTCCTAATTAGGATAAATGATATTGATG
131 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATG
* * * * *
3486421 ATTTTTTTTTGCATGAAAATATTTTCTTTGCCCTATTTTCCTTAAAAGT-AATGCTCAT-CCTTT
196 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAA-TCAAAGTTCATACC-TT
* * * * * *
3486484 AAATAAGACAAGCATCGAATCTCGTAACAGTCTGCATTCATTTCAAGATTGAG-ATCCAAAAACA
259 AAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAGCC-AAAACA
* * *
3486548 CATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCAT
323 CATTCCCTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAC
* * * * *
3486613 CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATCAGACAAAAAAGAATAGTC-T-GT--T---C
388 CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCC
* * *
3486671 ---C---TCA-AATGAGGCAAACAT
453 ATTCTTTTCAGGATTAGGC-ACCAT
* * * * ** *
3486689 AGATTCTAGTAATGATCTTCATTCATTTTTGGATAAGGCACTTTAAACACATTCTACACATTAGG
1 A-A-AC-A-T-A-G-TCTTC--TCA--TTAGGAT-A--CA---T---CATATT-GATGC-TTTGG
* * ** * ** * ** ** * * **
3486754 -AT--AAATGATATTGATTATTTTCTTTTGCATGGAAATCTTTTCTTTACCCT-ATTTCCTTTAA
44 TTTCGCAA-GA-AAGGCTT-TTTTC---T-CA--CCAAT-TTTTGTAAAGTCTAAGTT-C-GTGC
* * * * * * * *
3486815 ATCAAAGTTCATACCTTAA-ATAAGA--C-AGGTAACGATTCTCGTAATAGCCTCCATCCTT-T-
97 CTCAAA--TGAGA-C-AAACAT-GGATTCTA-GTAATGA-TCT--TCAT----T-CAT-TTTGTG
* * * * * ** * * **** * * *
3486874 -TTAAG-ATTGAGAAGCCCCCAAAC-ACACATTCCTTTCAAT-AGGA-TGCATGACATTGATGCT
147 ATTAGGCACT-ATAA--ACACATTCTCCTCATTAGGATAAATGA-TATTG-ATG--ATT--TTCT
* * * * * ** * * *
3486934 TTGGTGTCCCAAGAAAAGCTTTGCTTTCCACCGT-TTTT-GATAAAATCAATGCTT-GT-CTGTT
203 TT--TG---CATGGAAATCTTTTCTTTGC-CC-TATTTTCCTTAAAATCAAAG-TTCATAC-CTT
* * * ** * * * * * * * * * **
3486995 AAATATGATAAACATAAATACTCATACTAATCCCCCTTCTTTTCAGGATTAGGCA-CTGTAAACA
259 AAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAGC-CAAAACA
* * * * * * * * *
3487059 TAGTCTTCTCATT-ATTAGGATACATCATATTGGTGCTTTTGTTTCGCAAGAAAGGC-TTT-TTT
323 CA---TTC-CCTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT
* * * ** *
3487121 CTCACCAATTTTTG-TA-AAGTCTAAGTTCGTGC-CGCAAATAAGACAAACATG--GACTCTAGT
384 C-CACC-GTTTTTGATAGAA-TCAAAGTTTGT-CTCTTAAATAAGACAAACATGAATACTC-A-T
* * ** ** *
3487181 AATGATCTTCATTCATTTT--GTGATTAGGCATTAC
443 ACTAATCCCCATTC-TTTTCAG-GATTAGGCACCAT
* * * * * * ** * ** *
3487215 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCTTGAAA--ATTTTTTC
1 AAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTC
* * * * * * * * * * *
3487278 TTTACCCTATTTTCCT-TAAAATCAAAGCTCATACCTTAAATAAGATACACAAT-GATTCTCA-T
66 -TCA-CCAATTTT--TGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAAC-ATGGATTCT-AGT
* * ** * * * * **
3487340 AATGGTCTCCATTC-TTTTCAAGATT-GGTAAGCCAAAACACACATTC-CTTTCATTAGGATGCA
125 AATGATCTTCATTCATTTT-GTGATTAGG-CA-CTATAA-ACACATTCTC-CTCATTAGGATAAA
* * ** ** * * * * *** *
3487402 TGACATTGATGCTTTGGTCCTGCAAGAAAAACTTTGCTTT-CCACTATTTTTGGTAGAATCAAAG
185 TGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC-CTATTTTCCTTAAAATCAAAG
* * * ** * ** * * * * *
3487466 CTT-GT-CTCTTAAATATGACAAACATAAATACTCACACTAATCCCCCTTCTTTTCAGGATTGGG
249 -TTCATAC-CTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGG
* * * * * * * * * *
3487529 CA-CCTTAAACATAGT-CTTCTCATTAGGATACATCATATTGGTGCTTTGGTTTCGCAA-AAAAG
312 AAGCC-AAAACACATTCCCT-TCATTAGGATGCATGACATTGATGCTTTGGTGTCGCAAGAAAA-
* * * * * *
3487591 GC-TTT-TTTCTCACCAATTTTTG-TCA-AGTCTAAGTTCGTGC-CTCAAATGAGACAAACATGA
374 GCTTTTCTTTC-CACC-GTTTTTGAT-AGAATCAAAGTTTGT-CTCTTAAATAAGACAAACATGA
* * * * ** * *
3487651 ATTCTAATAATGATCTTCAATCATTTT--GTGATTAGGCACTATAT
435 ATACTCATACTAATCCCCATTC-TTTTCAG-GATTAGGCAC--CAT
* * * * * * ** ** ** ** ** *
3487695 AAAAACATTCTTTTCATTAGGATAAATGATATTGATTTTTTTCTTTTTCTTGAAAATCATTTCTT
1 AAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTTTT
* * * * * * * * * *
3487760 CGC-CCTATTTTCTTTAAAATCAATATTCATACAAATCCCCATTTTTTCAGGATTAGGCAACATA
65 CTCACCAATTTT-TGTAAAGTCTA-AGT--T-C--GT-GCC------TCA-AATGA-G--AC--A
* * * ** * * * * * * * ** *
3487824 AACAT--ATTCTTGTCATTAGGATACA--CGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTC
110 AACATGGATTCTAGTAATGA-TCTTCATTC-ATTTTG-TGATTAGG---CACTATAAACACATTC
* ** * * ** ******* *
3487885 TTCCAACCAATTTTTG-TAAA-GTCTAAGTTTATGCCTCAAAAGAGACAAACATGG-ATTCTAGT
169 -TCC--TC-A-TTAGGATAAATG-AT-A-TTGATGATTTTCTTTTG-----CATGGAAATCT--T
* * * ** * * * * * * * *
3487947 GATGATCTTCAT-TCATATTGTGATTAGGCACTATAAACACATTCTCTTCATTAGGATAAATGAT
219 --T--TCTT--TGCCCTATTTTCCTTA---A-AATCAA-A-GTTC-ATACCTTA-AAT-AA-GAC
* * * * * * * * ** *** ** **
3488011 ATTG-AT-GATTTTTTTTGCACGGA-AGGCT--TTTCTTTGCCCTATTTTCCTTAAAATCAAAGT
268 A-AGCATCGA---TTCTCGTA---ATAGTCTCCATTCTTT--TCAAGATT--GGGAAGCCAAAAC
* * * * * * * * * ***
3488071 TCA-TCCCTTAAATAGGA--CAAG-CGTTGATTCTCGTT-ATAGTCTC---CATTCCTTTCAAGT
322 ACATTCCCTTCATTAGGATGCATGACATTGATGCT--TTGGT-GTCGCAAGAAAAGCTTT----T
** * * * ** * ** *
3488128 CTGGGAAGCCAAAACACATTCTCTTCATAAAGATACATGGCATTGATGCT-TT-GGT--GTC--A
380 CT----TTCC---AC-CGTT-T-TTGATAGA-AT-CAAAG-TTTG-T-CTCTTAAATAAGACAAA
* * * * * * * * * * *
3488187 CAAGAAAAGCT-TTTCT-TTCCACCGTTTTTTGATAAAATCA-AAGTTTGTC-CCTT
430 CATGAATA-CTCATACTAATCC-CC-ATTCTT--T----TCAGGA-TTAGGCACCAT
* * * ** * * ** ** * ** * ** * *
3488240 ATATA-AGACAAACATGAATACTCATACAAATCCCCATT-CTTTTCTTGATTAGGCACCATAAAC
1 AAACATAGTC-TTC-TCATTA-GGATAC--AT-CATATTGATGCT-TTGGTTTCGCA--AGAAAG
* * ** **** * * ** * *** * ******
3488303 G-TAGTCTTCTCATTAGGATACACGATATTGATGTTTTGGTT-TTGCAAGAAACTCATTTTCCCA
57 GCT-TTTTTCTCACCA--ATTTTTG-TA---AAGTCTAAGTTCGTGCCTCAAA-TGAGACAAACA
*** * * * * ** ** * ** *
3488366 CCAATTTTTGTAAAGTCTAAGTTTGTCCCTCA-AATGAGACAAAGATGGATTCTAGTAAGGATTT
114 TGGATTCTAGT-AA---TGA-TCT-TCATTCATTTTGTGA-TTAG--GCA--CTA-TAA--A---
* * ** * ** * * * ** **** ** * **
3488430 TTATTATT-TTGTGATTAGGCACTATAAACACATT-CTCCACATTAGGATAAATGATATTTAAGA
162 -CA-CATTCTCCTCATTAGG-A-TA-AATGATATTGAT-GATTTTCTTTTGCATG-GA---AATC
* ***
3488493 TTTTCTTTTG-CATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT-CTCTTA
217 TTTTC-TTTGCCCT-ATTTTC-------------------CTTAAAATCAAAGTTCATAC-CTTA
* * * * *
3488556 AATAAGAGACA-CATTGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACAC
260 AATAAGACA-AGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACAC
* * * * * * *
3488620 ATTCCTTTCATTAGGATACAAGGCATTGATGCTTTGGTGTCACAAGAAACGCTTTCCTTTCCACC
324 ATTCCCTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACC
* * ** * * * * *
3488685 ATTTTTGATATAATCAAAGTTTGTCTCTTTTATTAGACAAACATTAATTCTCATACAAATCCCGA
389 GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCA
* *
3488750 TTTTTTTCAGGATTAGGCAACAT
454 TTCTTTTCAGGATTAGGCACCAT
* * * * * *
3488773 AAACATATTCTTGTCATTAGGATACATGATATTGATGCTTTGGTTTCACAGGAAAGGCTTTCTTC
1 AAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTC
* * * * * **
3488838 TAATCAATTTTTGTAAAGTCCAAGTTTGTGCCTCAAA-GAGATAAACATGGATTCTAGGGATGAT
66 TCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGAT
* * * *
3488902 CTTCATTCATTTTTTGATTAGGCACTATAAACACAATCTCTTCATTAGGATAGATGATATTGATG
131 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATG
* * * * *
3488967 ATTTTTTTTTTACATGGAAATCTTTTCTTTGCCCTATTTTCCATAAAATCAAAGCTCATCCCTTA
196 A-TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACCTTA
* * * *
3489032 AATAAGACAAGCATCAATTTGTCGTAACAGTCTCCATTCCTTTCAAGATTGGGAAGCCAAAACAC
260 AATAAGACAAGCATCGA-TTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACAC
* * *
3489097 ATTCCCTTCATTAGGATACAT-AGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTCCTTTCCAT
324 ATTCCCTTCATTAGGATGCATGA-CATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAC
* * * * * * *
3489161 CATGTTTT-ATAGAATCAAAGTTTGTCTCTTATATTAGGCAAATATTAATACTCATACAAATCCC
388 CGT-TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCC
* * *
3489225 CATTTTTTTCAGGAGTAGGCAACAT
452 CATTCTTTTCAGGATTAGGCACCAT
* * * * * * * *
3489250 AAACATATTCATGTCATTAGAATACA-CGATATTGAAGCTTTGGTTTCGTAAGAAAGACTTTCTT
1 AAACATAGTCTTCTCATTAGGATACATC-ATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTT
* * *
3489314 C-CAACCAA-TTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAGCATGGATTCTAGTGATG
65 CTC-ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATG
* *
3489377 ATCTTCATTTATTTTGTGATTAGGCACTATAAACACATTCTCTTCATTAGGATAAATGATATTGA
129 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGA
* * * * *
3489442 AGATTTTTTTTTTTGCATGGAAATCTTTTCTTTCCCCTACTTTCCTTAAAATCAAAGTTCATCCC
194 TGA--TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACC
* * * *
3489507 TTAAATAACACAAGCATCGATTCTCATAACAGTCTCCATTCCTTTCAAGATTGGGAAGCCAAAAC
257 TTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAAC
* * * * * * *
3489572 ACATTCTCTTCATAAGCATTCATGCCATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCTA
322 ACATTCCCTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA
* * * * * *
3489637 TCGTTTTTGATAGAATCAAAGTTTATCTCTTATATAAGAAAAACATTAATACTCATACAAATCCC
387 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCC
* **
3489702 CCTTCTTTTCTTGATTAGGCACCAT
452 CATTCTTTTCAGGATTAGGCACCAT
* * *
3489727 AAACATAGTCTTCTCATTAGGATACA-CGATATTGATGTTTTGG-TTCTGCAAGAAACGC-ATTT
1 AAACATAGTCTTCTCATTAGGATACATC-ATATTGATGCTTTGGTTTC-GCAAGAAAGGCTTTTT
* * * *
3489789 TCCCACCAAATTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTGATG
64 TCTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATG
*
3489854 ATCTTCATT-ATTTTTTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGA
129 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGA
* * * * *
3489918 TGATTTTCTTTTGCGTTGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCACAGTTCATCCCTT
194 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACCTT
* * * *
3489983 AAATAAGACAACCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACAC
259 AAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACAC
* * * *
3490048 ATTCTCTTCATTAGGATACATGGA-ATTGATGCTTTGGTGTCGCAAAAAAAGCTTTTCTTTCCTC
324 ATTCCCTTCATTAGGATGCAT-GACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAC
* ** * *
3490112 CGTTTTTGATAGAATCAAAGTTTGTGTCTTCTATAAGACAAACATGAATACGCATACAAATCCCC
388 CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCC
**
3490177 ATTCTTTTCTTGATTAGGCACCAT
453 ATTCTTTTCAGGATTAGGCACCAT
* * **
3490201 AAACATAGTCTTCTCATTAGGACACATTATATTGATGCTTTGGATTT-GCAAGAAATGTTTTTTT
1 AAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGG-TTTCGCAAGAAA-GGCTTTTT
* * * * *
3490265 TCCCACCAATTTTTGTAAGGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTGATC
64 TCTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATG
* * * * * *
3490330 AACTTGATTCATTTTGTGATTAGGCACTAGAAAGACATTGTCCTCAATAGGATAAAATGATATTG
129 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGAT-AAATGATATTG
* * *
3490395 ATGATTTTTTTTTTTGCATGGAAATCTTTTCTTTCCCCTATTTTCCTTAAAATCAAAGTTCATCC
193 ATGA--TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATAC
** * *
3490460 CTTAAATAAGACAAGTGTCGATTCTCGTAACAGTCTCCATTCCTTTT-AAGACTGGGAAGCCAAA
256 CTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATT-CTTTTCAAGATTGGGAAGCCAAA
* * * *
3490524 ACACATTCTCTTCATTAGGATACATCG-CATTGATGCTTTGGTGTCACAACAAAAGCTTTTCTTT
320 ACACATTCCCTTCATTAGGATGCAT-GACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT
* * **
3490588 CCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATACTCATAGAAAT
384 CCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAAT
* *
3490653 CTCCATTCTTTTCTTGG-TTAGGCACCAT
449 CCCCATTCTTTTC-AGGATTAGGCACCAT
* * * * * ** *
3490681 AAATATAGTCTTCT-TTCTAGGATACATGATATTGATGTTTTTCTTGGTTTTGCTGGAAAGGCAT
1 AAACATAGTCTTCTCAT-TAGGATACATCATATTGATG---CT-TTGGTTTCGCAAGAAAGGCTT
* ** * * *
3490745 TTTCCT-ACCACA-TTTTGTAAAGTCTAAGTTTATGCCTTAAATGTGACAAACTTGGATTCTAGT
61 TTTTCTCACCA-ATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGT
* * * * * * * *
3490808 GATGATATTAATTCATTTTGTGATTAGGCTCCAGAAACACATTCTCCTCAATAAGATAAATGATA
125 AATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATA
*
3490873 TTGATGATTTTCTTTCGCATGGAAATCTTTT-TTTCGCCCTATTTTCCTTAAAATCAAAGTTCAT
190 TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTT-GCCCTATTTTCCTTAAAATCAAAGTTCAT
* * ** * * * * **
3490937 -CCTTAAAAAATACCTGCATCAATTCTCGTAACAGTCTCCGTTCCTTTCTTGATTGGGAAGCCAA
254 ACCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAGCCAA
* * * ** * *
3491001 ATCAAATTCGCTTCATTAGGATATATGGCATTGATGCTTTTGTGTCGCAAGAAAAGCTTTTCCTT
319 AACACATTCCCTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTT-CTT
* * * * *
3491066 TCCATCATTTTTGATAGAATCAAAATTTGCCTCTTATATAAGACAAACATGAATACTCATA-TAA
383 TCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACT-A
**
3491130 ATCCCCATTCTTTTCTTGATTAGGCACCAT
447 ATCCCCATTCTTTTCAGGATTAGGCACCAT
* * ** * * *
3491160 AAA-ATAGCCTTCTGATTAGGATAGGT--T-TT-A-G---T--TAT-GCAAGAAGGGC-ATTTTC
1 AAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTC
* * * *
3491212 CCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATAGATTCTAGTGATGAT
66 TCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGAT
* * * * * *
3491277 ATTCATTTATTTTGTGATTAGGCACGATAAACACATTCTCATCTTTAGGATAAATGGTATTGATG
131 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATG
* * * * *
3491342 ATTTTCTTTTACATCGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCTTCCCTTAA
196 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACCTTAA
* * * * *
3491407 ATAAGACACGCATCGATTCTCATAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACATAT
261 ATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACAT
* * * *
3491471 TCCCTTCGTTAGGATCCATTG-CATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCA
326 TCCCTTCATTAGGATGCA-TGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCG
* * * *
3491535 TTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACAT---TACTAATGCAAATCCCCAT
390 TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCAT
3491597 T-TGTTTCAGGATTAGGCACCAT
455 TCT-TTTCAGGATTAGGCACCAT
* * * * * *
3491619 AGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAAGGCTTCTTTC
1 AAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTC
* * * * * *
3491684 CCACCAATTATTGTAAAGTCTAAGTTTGTGCCTCATATGAGACAAACATTGATTCTAGTGATGAT
66 TCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGAT
*
3491749 CTTCATTCATTTTGTGATTTAGGCACTATAAACACATTC-CCTTCATCAGGATAAATGATATTGA
131 CTTCATTCATTTTGTGA-TTAGGCACTATAAACACATTCTCC-TCATTAGGATAAATGATATTGA
* * *
3491813 TGATTTT-TTTTGCATGGAAAACTTTTCTTTGCCGTATTTT-CTTGAAAATCAAAGTTCATCCCT
194 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTT-AAAATCAAAGTTCATACCT
* * * * * * *
3491876 TAAATAAGATAAGCATCAATTTTCGTAACAGTCTCCATTCCTTTCAAGACTAGGAAGCCAAAACA
258 TAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACA
* * * * * * * **
3491941 CATTCTCTTCACTAGAATACATGGCATTGATGCTTTGGTGTCACAAAAAAAGCTTTTCTTTCCTT
323 CATTCCCTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAC
** * * * *
3492006 TATTTTTGATAGAATCAAAGTGTGTCTCTTATATAAGACAAACATGAATACGCATACAAATCCCC
388 CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCC
**
3492071 ATTCTTTTCTTGATTAGGCACCAT
453 ATTCTTTTCAGGATTAGGCACCAT
* *
3492095 AAACATAGTCTTCTCATTAGGATACATTATATTGATGCTTTGGATTT-GCAAGAAATGCTTTTTT
1 AAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGG-TTTCGCAAGAAAGGCTTTTTT
* * ** * *
3492159 CCCACCAATTTTTGTAAGGTCTAAGTTTATGCCTTAAATGAGACAAACATGGATTCTAGTGATGA
65 CTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGA
* * * * * *
3492224 ACTTGATTCATTTTGTGATTAGGCACTAGAAAGACATTCTCCTCAATAGGATAAATGATATTGAC
130 TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGAT
* * * *
3492289 GATTTTCTTTTCCATGGAAATCTTATCTTTGCCCTATTTT-CTTAAAATCAAAATTCATCCCTTA
195 GATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACCTTA
* * * * * *
3492353 AATAAGACAGGCATCAATTCTCGTAACAGTCTCCATTCCTTTCAAGATTAGGAAGCCAAAACCCA
260 AATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACA
* * * * * * ****
3492418 TTTCCTTCATTAGGATACAAGGC-TCTGATGCTTTGGTGTCGTAAG-AAAGCTTTCCTTTTTGTC
325 TTCCCTTCATTAGGATGCATGACAT-TGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACC
* * * * * * * * *
3492481 ATTTTTTATAGAATCAAAGTTTTTCTCCTATATTAGACAAACATTAATACTCATGCAAATCCCCA
389 GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCA
** *
3492546 TT-TTTTCAGGAGCAGGCAACAT
454 TTCTTTTCAGGATTAGGCACCAT
* * * * *
3492568 AAACATATTC-TCGTCATTAGGATACA-CGATATTTATGCTTTGGTTTAGCAAAAAAGGCTTTCT
1 AAACATAGTCTTC-TCATTAGGATACATC-ATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTT
* * * * *
3492631 TCCCACCAATTTTTGTAAAGTCTAAGTTTGTGTCTCAAATGAGAAAAACATGGATTCCTA-TGAT
64 TCTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATT-CTAGTAAT
* * * * *
3492695 GATCCTCATTCATTTTTTGATTAGGCACTATAAACACAATCTCTTGATTAGGATAAATGATATTG
128 GATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTG
* * *
3492760 ATGATTTTTTTTTTTGCATGGAAATCTTTTCTTTCCCCTATTTTCCTTAAAATCAAAGTTCATCC
193 ATGA--TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATAC
** * *
3492825 CTTAAATAAGACAAGTGTCGATTCTCGTAACAGTCTCCATTCCTTTT-AAGACTGGGAAGCCAAA
256 CTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATT-CTTTTCAAGATTGGGAAGCCAAA
* * * * *
3492889 ACACATTCTCTTCATTAGGATACATCG-CATTGATGCATTGGTGTCACAACAAAAGCTTTTCTTT
320 ACACATTCCCTTCATTAGGATGCAT-GACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT
* * * * * * **
3492953 CCACCATTTTTGATAGAATCAAAGTTTGTCTATTATAGAAGACAAATATGAATACTCAAAGAAAT
384 CCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAAT
* *
3493018 CTCCATTCTTTCCTC-GG-TTACGCACCAT
449 CCCCATTCTTT--TCAGGATTAGGCACCAT
* ** * * * * * *
3493046 AAACCTAGTCTTCTTTTTAGGATACATGATATTGATGTTTTGGTTTTGTAGGAAAGGC-ATTTTC
1 AAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTC
* * * * *
3493110 CCACCAATTTTTGTAAAGTCTAAGCTT-GTGCCTCAAAAGTGACAAACTTGGATTCTAGTGATGA
66 TCACCAATTTTTGTAAAGTCTAAG-TTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGA
* * * * *
3493174 TCTTAATTCATTTTGTGATTAGGCTCCAGAAACACATTCTCCTCAATAGGATAAATGATATTGAT
130 TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGAT
* * * *
3493239 GATTTTCTTTCGCATGGAAATCTTTT-TCTTGCCCTATTTTCCTTAAAATCAAAGGTCATCCCAT
195 GATTTTCTTTTGCATGGAAATCTTTTCT-TTGCCCTATTTTCCTTAAAATCAAAGTTCATACCTT
* ** * * * * * *
3493303 AAATAAGTCCCGCATCGACTCTCGTAACAGTCTCCATTCCTTTCATGATTGGGAAGCCAAATCAA
259 AAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACAC
* * * * *
3493368 ATTCCCTTCATTAGGATACATGGA-ATTGATGCTTTGGTGTCGCAAGAAAAGATTTCCTTTCGAT
324 ATTCCCTTCATTAGGATGCAT-GACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAC
* * * *
3493432 CATTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATGAATACTCATACAAATCCCC
388 CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCC
* *
3493497 ATTTTTTTTAGGATTAGGCACCAT
453 ATTCTTTTCAGGATTAGGCACCAT
* * * * *
3493521 AGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAAGGCTTTTTTC
1 AAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTC
* * * * * * * * *
3493586 CCACCAATTATTGTAAAGTCTATGTTTGCGTCTCAAATGATACAAACATTGATTCTAGTGATGAT
66 TCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGAT
3493651 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCTTCATTAGGATAAATGATATTGAT
131 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC-TCATTAGGATAAATGATATTGAT
* * *
3493715 GATTTTTTTTTTGCATGGAAATGTTTTCTTTGCCCTATTTT-CTTAAAAATCAAAGTTCATCCCT
195 GA-TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTT-AAAATCAAAGTTCATACCT
* * * * *
3493779 TAAATAAGACAAGTATTGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACA
258 TAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACA
* * * * *
3493844 CATTCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAAAAAAGCTTTTCTTTCCTC
323 CATTCCCTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAC
* * * *
3493909 TGTTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATACGCATACAAAT-CCC
388 CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCC
*
3493973 ATTCTTTT-TGTTGATTAGGCACCAT
453 ATTCTTTTCAG--GATTAGGCACCAT
* * * *
3493998 AAACATAGTCTTCTCATTAGCATACATTATATTGATGCTTTGGATTT-GCCAGAAATGCTTTTTT
1 AAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGG-TTTCGCAAGAAAGGCTTTTTT
* * * * * **
3494062 CCCACCAATTTTTGTAAGGTCTAAGTTTGTGGCTCAAATGAGACAAACATGGATTTTAGCGATGA
65 CTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGA
* ** * * *
3494127 ACTTGGTTCATTTTGTGATTAGGCACTAGAAAGACATTCTCCTCAATAGGATAAATGATATTGAT
130 TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGAT
* * * * *
3494192 GATTTTCTTTTGCATGGAAATCTTATCTTTGCCCTATTTTTCTTAAAATCAAAATTCATCCCTTG
195 GATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACCTTA
* * *
3494257 AATAAGAC-AGACATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACAC
260 AATAAGACAAG-CATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACAC
* * * * * * * * * *
3494321 TTTCCTTTTATTAGGATACATGGCATAGACGCTTTGGTGTCACAAGAAACGCTTTTCTTTACACC
324 ATTCCCTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACC
* * * * * *
3494386 GTTTTTGATAGAATCAAAGTTTATGTCTTATATTAGACAAACATTAATACTCATACAAATCCCCA
389 GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCA
** *
3494451 TT-TTTTTGGGATTAGGCAACAT
454 TTCTTTTCAGGATTAGGCACCAT
* * *
3494473 AAACATATTCTTGTCATTAGGATACATGATATTGATGCTTT-GTTTCGCAAGAAAGGCTTTCTTT
1 AAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTT-TTT
* ** * * *
3494537 -TAACCAATTTTTGTAAAGTCTAAGTTTATGCCTCAAATAAGACAAACAAGGATTCTAGTGATGA
65 CTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGA
3494601 TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCTTCATTAGGATAAATGATATTGA
130 TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC-TCATTAGGATAAATGATATTGA
* * * * * *
3494665 AGACTTTTTTTTTTGCATAGAAATCTTTTCTTTGCCCCATTTT-CTTGAAAGTCAAAGTTCATGC
194 TGA--TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTT-AAAATCAAAGTTCATAC
** * ** * *
3494729 CTTAAATAAGAC-AGCCATCGATTCTCGTAACGGTCTCCATTCCGTTT-AAGGCTAGGAAGCCGA
256 CTTAAATAAGACAAG-CATCGATTCTCGTAATAGTCTCCATT-CTTTTCAAGATTGGGAAGCCAA
* * * * *
3494792 AACACATTCTCTTCATTAGGATACATTG-CATTGATGCTTTGCTGTCACAACAAAAGCTTTTCTT
319 AACACATTCCCTTCATTAGGATGCA-TGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT
* * * **
3494856 TCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATAGTCATAGAAA
383 TCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAA
* * *
3494921 TCTCCATTCTTTTCTTGG-TTAGGCAGCAT
448 TCCCCATTCTTTTC-AGGATTAGGCACCAT
* ** * * * * * *
3494950 AAACTTAGTCTTCTTTTTAGGATACATGATAATAATGTTTTGGTTTTGCAAGAAAGG-TATTTTC
1 AAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTC
* * * * * *
3495014 CCACCAATTTTTGTAAAGTATAAGTTTGTGCCTCAAATGTGACAAACTTGGATTCTAGTGATGAT
66 TCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGAT
* * * * * * *
3495079 CTTAATTCATTTTGTGATTAGGCTCCAGAAACACATTTTCCTCAATAGGATAAATGATATTGACG
131 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATG
* ** * * * * *
3495144 ATTTTATTTCACATGGAAATCTTTCCTTTGCCCAATTTTCCTTAAAATCAAAGTTCTTCCCCTAA
196 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACCTTAA
** * * * * * *
3495209 ATAAGACCCGCATCGATTCTTGTAATAGTCTCCGTT-TCTTTCATGACTGGGAAGCCAAATCAAA
261 ATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCT-TTTCAAGATTGGGAAGCCAAAACACA
* * * * * *
3495273 TTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTCCTTTCGATCA
325 TTCCCTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCG
* * * * *
3495338 TTTTTGATAGAATCAAAGTTTGCCTCTTATATACGACAAACATTAATACTCATACAAATCCCCAT
390 TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCAT
**
3495403 TCTTTTCTTGATTAGGCACCAT
455 TCTTTTCAGGATTAGGCACCAT
* * * * * * *
3495425 AAACATAGCCTTCTGATTAGGATAGA-CGATATTGACGTTTTAGTTAT-GCAAGAAAGGC-ATTT
1 AAACATAGTCTTCTCATTAGGATACATC-ATATTGATGCTTTGGTT-TCGCAAGAAAGGCTTTTT
* * * * ** *
3495487 TCCCACCAATTTTTGTAAAGCCTAAGTTTGTGCCACAAATGAGACAAACATATATTCTAGTGATG
64 TCTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATG
* * *
3495552 ATCTTCATTCATTTTGTGATTA-GCACTATAAACACATTCTCCTCTTTAGGATAAATGGTATTAA
129 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGA
* * * * * *
3495616 TGATTTTCTTTTACATGGAAATCCTTTCTTTGCCCTATTTTTCTTAAAATCAAAGTTCTTCCCGT
194 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACCTT
* * * * * * *
3495681 AAATAAGACACGCATCGATTCTCATAACAATCTCCATTCCTTTCGAGACTGGGAAGCCAAAACAC
259 AAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACAC
* * * * * * *
3495746 ATTCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAAAAAAGTTTTTCTTTCCTCT
324 ATTCCCTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACC
* * *
3495811 GTTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATACGCATACAAAT-CCCA
389 GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCA
*
3495875 TTCTTTT-TGTTGATTAGGCACCAT
454 TTCTTTTCAG--GATTAGGCACCAT
* * * *
3495899 AAACATAGTCTTCTCATTAGCATACATTATATTGATGCTTTGGATTT-GCCAGAAATGCTTTTTT
1 AAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGG-TTTCGCAAGAAAGGCTTTTTT
* * * * * **
3495963 CCCACCAATTTTTGTAAGGTCTAAGTTTGTGGCTCAAATGAGACAAACATGGATTTTAGCGATGA
65 CTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGA
* ** * * *
3496028 ACTTGGTTCATTTTGTGATTAGGCACTAGAAAGACATTCTCCTCAATAGGATAAATGATATTGAT
130 TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGAT
* * * * *
3496093 GATTTTCTTTTGCATGGAAATCTTATCTTTGCCCTATTTTTCTTAAAATCAAAATTCATCCCTTG
195 GATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACCTTA
* * *
3496158 AATAAGAC-AGACATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACAC
260 AATAAGACAAG-CATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACAC
* * * * * * * * * *
3496222 TTTCCTTTTATTAGGATACATGGCATAGACGCTTTGGTGTCACAAGAAACGCTTTTCTTTACACC
324 ATTCCCTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACC
* * * * *
3496287 GTTTTTGATAGAATCAAAGTTTATCTCTTATATTAGACAAACATTAATACTCATACAAATCCCCA
389 GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCA
** *
3496352 TT-TTTTTGGGATTAGGCAACAT
454 TTCTTTTCAGGATTAGGCACCAT
* * *
3496374 AAACATATTCTTGTCATTAGGATACATGATATTGATGCTTT-GTTTCGCAAGAAAGGCTTTCTTT
1 AAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTT-TTT
* * * * *
3496438 -TAACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGTGGCAAACTTGGATTCTAG-AGATG
65 CTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTA-ATG
3496501 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCTTCATTAGGATAAATGATATTG
129 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC-TCATTAGGATAAATGATATTG
* * *
3496565 ATGATTTTTTTTTTGCATGGAAAACTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCC
193 ATGA-TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACC
* * * *
3496630 TTAAATAAGACAAGCGTCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAAC
257 TTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAAC
* * * *
3496695 ACATTCTCTTCATTAGGATACATTG-CATTGATGCTTTGGTGTCACAACAAAAGCTTTTCTTTCC
322 ACATTCCCTTCATTAGGATGCA-TGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC
* * * ** *
3496759 ACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATAGTCATAGAAATCT
386 ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCC
* *
3496824 CCATTCTTTTCTTGG-TTAGGCAGCAT
451 CCATTCTTTTC-AGGATTAGGCACCAT
* ** * * * * *
3496850 AAACTTAGTCTTCTTTTTAGGATACATGATATTAATGTTTTGGTTTTGCAAGAAAGG-TATTTTC
1 AAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTC
* * * ** * *
3496914 CCACCAATTTTTGTAAAGTATAAGTTTGTGCCTCAAATGTTACAAACTTGGATTCTAGTGATGAT
66 TCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGAT
* * * * * * *
3496979 CTTAATTCATTTTGTGATTACGCTCCAGAAACACATTTTCCTCAATAGGATAAATGATATTGATG
131 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATG
** * * *
3497044 ATTTTCTTTCACATGGAAATCTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCCTAA
196 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACCTTAA
* ** * * ** * * * * *
3497109 ACAAGACCCGCAACGATTCTTGTAATAGTCTCTGTTCCTTTCATGACTGGGAAGCCAAATCAAAT
261 ATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACAT
* * * * * * *
3497174 TCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTTGCAAGAAAAGCTTTCCTTTCGATCAT
326 TCCCTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGT
* * * * *
3497239 TTTTGATAGAATCAAAGTTTGCCTCTTATATACGACAAACATTAATACTCATACAAATCCCCATT
391 TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATT
**
3497304 CTTTTCTTGATTAGGCACCAT
456 CTTTTCAGGATTAGGCACCAT
* * * *** * *
3497325 AAACATAGCCTTCTGATTAGGATAGA-CGATATTGACATTTTAGTTAT-GCAAGAAAGGC-ATTT
1 AAACATAGTCTTCTCATTAGGATACATC-ATATTGATGCTTTGGTT-TCGCAAGAAAGGCTTTTT
* * * ** * *
3497387 TCCCACCAATTTTTGTAAAGCCTAAGTTTGTGCCTCAAATGAGACAAACATATATTCTAGTGACG
64 TCTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATG
* * *
3497452 ATTTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCTTTAGGATAAATGGTATTGA
129 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGA
* * *
3497517 TGATTTTCTTTTACATGGAAATCCTTTCTTTGCACTAT
194 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTAT
3497555 AAACACGTAT
Statistics
Matches: 14416, Mismatches: 2469, Indels: 1255
0.79 0.14 0.07
Matches are distributed among these distances:
458 1 0.00
459 35 0.00
460 17 0.00
461 6 0.00
462 63 0.00
463 232 0.02
464 52 0.00
465 2 0.00
466 2 0.00
467 23 0.00
468 71 0.00
469 102 0.01
470 170 0.01
471 64 0.00
472 287 0.02
473 454 0.03
474 2102 0.15
475 2248 0.16
476 2994 0.21
477 2347 0.16
478 824 0.06
479 243 0.02
480 423 0.03
481 469 0.03
482 149 0.01
483 23 0.00
484 18 0.00
485 7 0.00
486 6 0.00
487 3 0.00
488 5 0.00
489 9 0.00
490 15 0.00
491 9 0.00
492 10 0.00
493 10 0.00
494 7 0.00
495 26 0.00
496 16 0.00
497 22 0.00
498 20 0.00
499 21 0.00
500 18 0.00
501 14 0.00
502 29 0.00
503 14 0.00
504 11 0.00
505 11 0.00
506 11 0.00
508 5 0.00
509 7 0.00
510 4 0.00
511 76 0.01
512 15 0.00
513 40 0.00
514 53 0.00
515 15 0.00
516 7 0.00
517 6 0.00
518 1 0.00
519 13 0.00
520 11 0.00
521 10 0.00
523 8 0.00
524 7 0.00
525 3 0.00
526 21 0.00
527 9 0.00
528 29 0.00
529 7 0.00
530 10 0.00
531 12 0.00
532 18 0.00
533 10 0.00
534 5 0.00
535 4 0.00
536 5 0.00
537 5 0.00
538 15 0.00
539 14 0.00
540 18 0.00
541 17 0.00
542 6 0.00
543 11 0.00
544 15 0.00
545 17 0.00
546 12 0.00
547 18 0.00
548 22 0.00
549 23 0.00
550 21 0.00
551 27 0.00
552 11 0.00
553 5 0.00
554 11 0.00
555 3 0.00
556 5 0.00
557 5 0.00
558 1 0.00
559 4 0.00
560 1 0.00
563 3 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.37
Consensus pattern (476 bp):
AAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTC
TCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGAT
CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATG
ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATACCTTAA
ATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACAT
TCCCTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGT
TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATT
CTTTTCAGGATTAGGCACCAT
Found at i:3485697 original size:159 final size:155
Alignment explanation
Indices: 3481275--3486654 Score: 939
Period size: 159 Copynumber: 33.9 Consensus size: 155
3481265 AGGCAAATCG
* * * *
3481275 TCTCCACTCTTTTCGAGATTAGGAAGCCAAAACACACAATCCTTTCATTAGGATGCATGACATTG
1 TCTCCATTCTTTTCAAGATT-GGAA-CCAAAA-ACACATTCC-TTCATTAGGATACATGACATTG
* ** ** * * *
3481340 ATGCTTTGGTGTCGCAAGAAAAGCTTTACTTTCCACCGTTTCAGACACAATCAAACTTTGTCTCT
62 ATGCTTTGGT-TCGCAAGAAAAGCTTTTCTTTCCACTATTTTTGATA-AATCAAAGTTCGTCTCT
*
3481405 TAAATACA-ACAAACAT-GAATAT-TCAT-ACTAA
125 TAAATA-AGACAAACATCG-AT-TCTCGTAAC-AA
* * * * * * * * * *
3481436 TC-CTCGTTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAAGATAAATCATATTGA
1 TCTC-CATTCTTTTCAAGATT-GGAACCAAAAACACATTCCT-TCATTAGGATACATGACATTGA
* * * * *
3481500 TGCTTTGGTTTTGCAAGAAAGGC-TTT-TTTCTCACCAATTTTTG-TAAAGTCTAAGTTCATGC-
63 TGCTTTGG-TTCGCAAGAAAAGCTTTTCTTTC-CA-CTATTTTTGATAAA-TCAAAGTTCGT-CT
* * * * * **
3481561 CTCAAATGAGACAAACATGGACTCTAGTAATGA
123 CTTAAATAAGACAAACATCGATTCTCGTAACAA
*** * * * * * * * * * *
3481594 TCAT-CATTCATTTTTGTGATTAGGCACTATACACACATTCTCCTCATAAGGACAAAAGATATTG
1 TC-TCCATTC-TTTTCAAGATT-GGAACCAAAAACACATTC-CTTCATTAGGATACATGACATTG
** * * * * * * * * *
3481658 ATAATTTTCGTTTGCATGGAAATCTTTTCTTTGCC-TTATTTTCCT-TTAAATCAAAGTTCATAT
62 AT-GCTTTGGTTCGCAAGAAAAGCTTTTCTTT-CCACTATTTT--TGATAAATCAAAGTTCGTCT
* * * * *
3481721 GTTAAATGAGACAAGCATCGATTCTCAT-ACTAG
123 CTTAAATAAGACAAACATCGATTCTCGTAAC-AA
*
3481754 TCTCCATTCTTTTCAAGATTTGGAAGCC-AAAACACATTCCCTTCATTAGGATGCATGACATTGA
1 TCTCCATTCTTTTCAAGA-TTGGAA-CCAAAAACACATT-CCTTCATTAGGATACATGACATTGA
** ** * * * * * **
3481818 CACTTTATTGTCACAAAAAAAGCTTTTCTTTCCACCATTTTTTACTGAATCAAAGTTTATCTCTT
63 TGCTTTGGT-TCGCAAGAAAAGCTTTTCTTTCCACTATTTTTGA-TAAATCAAAGTTCGTCTCTT
* * *
3481883 AAATAAGACAAATAT-GAATACTCAT-ACTAA
126 AAATAAGACAAACATCG-ATTCTCGTAAC-AA
* * * * * * * * * * * *
3481913 TCCCCCTTATTTTCAGGATTAGGCAGCATAAACATAGTT-TTCTCATTATGATACATCATATTGA
1 TCTCCATTCTTTTCAAGATT-GGAACCAAAAACACA-TTCCT-TCATTAGGATACATGACATTGA
* * * * * **
3481977 TGCATTGGTTTCGCAAG-AAAGGTTTT-TTTCTCCCAAATTTTTG-TAAAGTCTAAGTTCGTGAC
63 TGCTTTGG-TTCGCAAGAAAAGCTTTTCTTTC-CAC-TATTTTTGATAAA-TCAAAGTTCGTCTC
* * * * **
3482039 TCAAATTAGACAAACATGGATTCTAGTAATGA
124 TTAAATAAGACAAACATCGATTCTCGTAACAA
* * ** * * * * * * *
3482071 TCTTCAATCATTTT-GTGATTAGGCACTACAAATACATTCTCCTCATTAGGATAAATGATATTGA
1 TCTCCATTC-TTTTCAAGATT-GGAACCAAAAACACATTC-CTTCATTAGGATACATGACATTGA
* * * * * **
3482135 T--TTT-TTTTGCATGGAAATCTTTTCTTTACC-CTATTTCCCTT-A-AAATCAAAGTTTATAC-
63 TGCTTTGGTTCGCAAGAAAAGCTTTTCTTT-CCACTATTT---TTGATAAATCAAAGTTCGT-CT
* * * *
3482193 CTTAAATAAGACAAGCAACGATTCTCGTAATAG
123 CTTAAATAAGACAAACATCGATTCTCGTAACAA
* * * * *
3482226 TCTCTATTATTCTCAAGATTGGTAAGCC-AAAACACATTTTCCTTTCATTAAGATGCATGACATT
1 TCTCCATTCTTTTCAAGATTGG-AA-CCAAAAACACA--TTCC-TTCATTAGGATACATGACATT
* * * * ** * * * *
3482290 GATGCTTTAGTGCCGCAAGAAAAGCTTTGCTTTCTACCGTTTCTAATAGAATCAAAGTTTGTTTC
61 GATGCTTTGGT-TCGCAAGAAAAGCTTTTCTTTCCACTATTTTTGATA-AATCAAAGTTCGTCTC
* ** * *
3482355 TTAAATATGACAAACATTAATACTCAT-ACTAA
124 TTAAATAAGACAAACATCGATTCTCGTAAC-AA
* * * * * * * * *
3482387 TCCCCATTCTATTCAAGATTAGACACCATAAACATAGTCTTCTCATTAGGATACATCATATTGAT
1 TCTCCATTCTTTTCAAGATTGGA-ACCAAAAACACATTCCT-TCATTAGGATACATGACATTGAT
* * * * * *
3482452 GCTTTGGTTTCGCAAGAAAAGCCTTT-TTCCCACCAATTTTTG-TAAAGTCTAAGTCCGGGC-CT
64 GCTTTGG-TTCGCAAGAAAAGCTTTTCTTTCCA-CTATTTTTGATAAA-TCAAAGTTC-GTCTCT
* * * * * * **
3482514 CAAATGAGATAAACATGGATTCTGGGAATGA
125 TAAATAAGACAAACATCGATTCTCGTAACAA
** * * * * * * *
3482545 TC-CTCATTCATTTT-GGGATTAGGTACTATAAACACATTCTCCTCA-TAGGATAAATGATAGTG
1 TCTC-CATTC-TTTTCAAGATT-GGAACCAAAAACACATTC-CTTCATTAGGATACATGACATTG
* ** * * * * * *
3482607 ATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCC-CTATTTTCCTTA-AAATCAATGTTCATAC
62 ATG-CTTTGGTTCGCAAGAAAAGCTTTTCTTT-CCACTATTTT--TGATAAATCAAAGTTCGT-C
* * * *
3482670 -CTTAAATAAGACAAGCATC-ACTTCTCGTTATAG
122 TCTTAAATAAGACAAACATCGA-TTCTCGTAACAA
* * * * * **
3482703 TCTCCATTCTTTCCCAGATTGGGAGGCC-AAAACATATTCCCTTCATTAGGATGCATGACAACGA
1 TCTCCATTCTTTTCAAGATT-GGA-ACCAAAAACACATT-CCTTCATTAGGATACATGACATTGA
* * * * * *
3482767 AGCTTTTGTGTT-GTAAGAAAAACTTTTCTTTCCACCATTTTTGGATAGAATCAGAGTTTGTCTC
63 TGC-TTTG-GTTCGCAAGAAAAGCTTTTCTTTCCACTATTTTT-GATA-AATCAAAGTTCGTCTC
* * *
3482831 TAAAATAAGACAAACAT-GAATACTCAT-ACTAA
124 TTAAATAAGACAAACATCG-ATTCTCGTAAC-AA
** * * * * * * * *
3482863 TC-CCTATTCCTTTT-GGGATTAGGCAGCATAAACA-TTGTCTTCTCATTAGGGTACACGATATT
1 TCTCC-ATT-CTTTTCAAGATT-GGAACCAAAAACACAT-TCCT-TCATTAGGATACATGACATT
* * * * * *
3482925 GATGCTTTGGTTTTGCAAGAAAGGC-TTTCTTCCCACCAATTTTTG-TGAAGTCTAAGTTCGTGC
61 GATGCTTTGG-TTCGCAAGAAAAGCTTTTCTTTCCA-CTATTTTTGAT-AAATCAAAGTTCGT-C
* * * * **
3482988 -CTCAAATTAGACAAACATGGATTCTAGTAATGA
122 TCTTAAATAAGACAAACATCGATTCTCGTAACAA
** ** * * * * * *
3483021 TCTTTATTCATTTT-GTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGA
1 TCTCCATTC-TTTTCAAGATT-GGAACCAAAAACACATTC-CTTCATTAGGATACATGACATTGA
** * * * *** **
3483085 T--TTTTTTTTGCATTG-AAATCTTTTCTTTGCC-CTATTTTCCTTGAAATCAAAGTTTATGC-C
63 TGCTTTGGTTCGCA-AGAAAAGCTTTTCTTT-CCACTATTTTTGAT-AAATCAAAGTTCGT-CTC
* * * * *
3483145 TTAAATAAGATAGACAACGATTCTCGTAATAG
124 TTAAATAAGACAAACATCGATTCTCGTAACAA
** * *
3483177 TCTCTGTTCTTTTCAAGATTGGTAAGCCAAAACACACTTTCCTTTCATTAGGATATATGACATTG
1 TCTCCATTCTTTTCAAGATTGG-AA-CCAAAA-ACACATTCC-TTCATTAGGATACATGACATTG
* * * * * * * *
3483242 ATGCTTTGGTGCCGTAAGAAAAGCTTTGCTTTCCACTGTTTCTGA-AGAACCAATGTTTGTCTCT
62 ATGCTTTGGT-TCGCAAGAAAAGCTTTTCTTTCCACTATTTTTGATA-AATCAAAGTTCGTCTCT
* ** * *
3483306 TAAATATGACAAACATTAATACTCAT-ACTAA
125 TAAATAAGACAAACATCGATTCTCGTAAC-AA
* * * * * * * * * *
3483337 TCCCCCTTCTTTTCAAGATTAGACGCCATAAACATAGTCTTCTCATTAGGATACATCATATTGAT
1 TCTCCATTCTTTTCAAGATTGGA-ACCAAAAACACATTCCT-TCATTAGGATACATGACATTGAT
* * * *
3483402 GCTTTGGTTTCGCAAGAAAGGCTTTT-TTCCCACCAATTTTTG-TAAAGTCTAAGTTCAAG-C-C
64 GCTTTGG-TTCGCAAGAAAAGCTTTTCTTTCCA-CTATTTTTGATAAA-TCAAAGTTC--GTCTC
* * * * * *
3483463 TCAAATGAGACAAACATGGATTCTAGGAATAA
124 TTAAATAAGACAAACATCGATTCTCGTAACAA
* ** * * * * *
3483495 TCTTCATTCATTTT-GGGATTAGGTACTATAAAA-ACATTCTCCTCATTAGGATAAATGATAGTT
1 TCTCCATTC-TTTTCAAGATT-GGAACCA-AAAACACATTC-CTTCATTAGGATACATGACA-TT
* ** * * * * * ** *
3483558 -ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC-CT-TGTTTTCCTTAAAATCAATGTT-GAT
61 GATG-CTTTGGTTCGCAAGAAAAGCTTTTCTTTCCACTAT-TTTT-GAT-AAATCAAAGTTCG-T
** * * * *
3483619 AACTTAAATAAGAC-AACATCAATTCTTGTAATAG
121 CTCTTAAATAAGACAAACATCGATTCTCGTAACAA
* * * * ***
3483653 TCTCCATTCTTTTCAAAATTGGGAGGCC-AAAACACATTCCCTTCATTGGGATGCATGACAACAA
1 TCTCCATTCTTTTCAAGATT-GGA-ACCAAAAACACATT-CCTTCATTAGGATACATGACATTGA
* * * * *
3483717 AGCTTTGGTGTCGTAAGAAAAACTTTTCTGTCCACCGT-TTTTTGATAGAATCAAAGTTTGTCTC
63 TGCTTTGGT-TCGCAAGAAAAGCTTTTCTTTCCA-C-TATTTTTGATA-AATCAAAGTTCGTCTC
* * *
3483781 TAAAATAAG--AAACAT-GAATACTCAT-ACTAA
124 TTAAATAAGACAAACATCG-ATTCTCGTAAC-AA
* * * * * ** * * * * * *
3483811 TCCCCATTATTTTTAGGATTAGGCAGTATAAACATAGTCTTCTCATTAGGGTACATGATATTGAT
1 TCTCCATTCTTTTCAAGATT-GGAACCAAAAACACATTCCT-TCATTAGGATACATGACATTGAT
* * * * *
3483876 GCTTTGGTTTTGCAAGAAAGGC-TTTCTTCCCACCAATTTTT-CTAAAGTCTAAA-TTCGTGC-C
64 GCTTTGG-TTCGCAAGAAAAGCTTTTCTTTCCA-CTATTTTTGATAAA-TC-AAAGTTCGT-CTC
* * * * ***
3483937 TCAAAAAAGACAAACATGGATTCTAGTAATGC
124 TTAAATAAGACAAACATCGATTCTCGTAACAA
** ** * * * * * * *
3483969 TCTTTATTCATTTTGTA-ATTAGGCACTATAAACACATTCTCCTCAATAGGATAAATGATATTGA
1 TCTCCATTC-TTTTCAAGATT-GGAACCAAAAACACATTC-CTTCATTAGGATACATGACATTGA
* ** * * * * *
3484033 TGATTTTCTTTTGCATA-AAAATCTTTTCTCTGCC-CTATTTTCCT-TTAAATCAAAGTTCATAC
63 TG-CTTTGGTTCGCA-AGAAAAGCTTTTCT-TTCCACTATTTT--TGATAAATCAAAGTTCGT-C
* * * *
3484095 -GTTAAATAAGACAAGCATCGATTCTCGTAATAG
122 TCTTAAATAAGACAAACATCGATTCTCGTAACAA
* *
3484128 TCTCCATTCTTTTTAAGATTGGGAACCAAAAGCACATTCCCTTCATTAGGATACATGACATTGAT
1 TCTCCATTCTTTTCAAGATT-GGAACCAAAAACACATT-CCTTCATTAGGATACATGACATTGAT
* * * * * ** *
3484193 GTTTTTGTGTCGCAAGAAAAGTTTTTCTTTCCACCATTTTTGATAGAATCAAAATTTATGTCTTA
64 GCTTTGGT-TCGCAAGAAAAGCTTTTCTTTCCACTATTTTTGATA-AATCAAAGTTCGTCTCTTA
* * *
3484258 AATAAGATAAACA-AGAATACTC-TAACTAA
127 AATAAGACAAACATCG-ATTCTCGTAAC-AA
* * * * * * * * *
3484287 TCCCCATTCCTTTCAGGATTAGATATCATAAACATA-T-CTAGTCATTAGGATACATCATATTGA
1 TCTCCATTCTTTTCAAGATTGGA-ACCAAAAACACATTCCT--TCATTAGGATACATGACATTGA
* * * * * * *
3484350 TGCTTAAGTTTCACATGAAAGGCTTTT-TTTCTCACCAATTTTTG-TAAAGTCTAAGTTCGTGC-
63 TGCTT-TGGTTCGCAAGAAAAGCTTTTCTTTC-CA-CTATTTTTGATAAA-TCAAAGTTCGT-CT
* * * * * **
3484412 CTCAAATGAGAAAAACATGGATTCTAGTAATGA
123 CTTAAATAAGACAAACATCGATTCTCGTAACAA
* * * *** ** * *
3484445 TCTTCATT-TATTTCATGATTAGGCACTTTAAACACATTTTTCTCATTAGGATAAATGATATTGA
1 TCTCCATTCT-TTTCAAGATT-GGAACCAAAAACACATTCCT-TCATTAGGATACATGACATTGA
** ** * * * * * *** *
3484509 TTATTTTCTTTTGCATGGAAATCATTTCTTTGCC-CTATTTTCCTTCAAATCAAAGTTCATAC-C
63 -TGCTTTGGTTCGCAAGAAAAGCTTTTCTTT-CCACTATTTTTGAT-AAATCAAAGTTCGT-CTC
* * * * *
3484572 TTAAATAAGATAAGCAAT-GATTCTCGTCATAG
124 TTAAATAAGACAAAC-ATCGATTCTCGTAACAA
* * * * *
3484604 TCTCCATTCTTTTCAAGATTACGAAGCCAAAACACACAATCCTTTCATTAGCATGCATGGCATTG
1 TCTCCATTCTTTTCAAGATT-GGAA-CCAAAA-ACACATTCC-TTCATTAGGATACATGACATTG
** * ** * * * *
3484669 ATGCTTTAATGCCGCAAGAAAAGCTTTTCTTTCCACCGTTTCTAATGGAATCAAAGTTTGTCTCT
62 ATGCTTTGGT-TCGCAAGAAAAGCTTTTCTTTCCACTATTTTTGAT-AAATCAAAGTTCGTCTCT
** * *
3484734 TAAATTTGACAAACAT-GAATACTCAT-ACTTAA
125 TAAATAAGACAAACATCG-ATTCTCGTAAC--AA
* * * * * * * * * * *
3484766 TCCCCTTTTTTTTTTCATGATTAGGCACCATAAACATAGT-CTTCTTATTAGGATAAATCATATT
1 TCTCC--ATTCTTTTCAAGATT-GGAACCAAAAACACATTCCTTC--ATTAGGATACATGACATT
* *** * * * * * *
3484830 GATTCTTCAATTTGACAAGAAAGGCTTTT-TTCTCCCCAATTTTTG-TAAAGTCTATGTTCGTGC
61 GATGCTTTGGTTCG-CAAGAAAAGCTTTTCTT-TCCACTATTTTTGATAAA-TCAAAGTTCGT-C
* * * * * * **
3484893 -CTCAAATATGATAAACCTGGATTCTAGTAATGA
122 TCTTAAATAAGACAAACATCGATTCTCGTAACAA
* * ** * * * * * * *
3484926 TCAT-TATTAATTTT-GTGATTGGGCACTACAAACACATTCTCCTCTTTAGGATAAATGATATTG
1 TC-TCCATT-CTTTTCAAGATT-GGAACCAAAAACACATTC-CTTCATTAGGATACATGACATTG
** ** * * * * * * * *
3484989 ATTATTTTCTTTTGTATGGAAATCTTTTCTTTGCC-CTATTTTCCT-TTAAATGAAAGTTCATAC
62 A-TGCTTTGGTTCGCAAGAAAAGCTTTTCTTT-CCACTATTTT--TGATAAATCAAAGTTCGT-C
** * * *
3485052 -CTTAAATAAGACAGGCAACGATTCTCGTAATAG
122 TCTTAAATAAGACAAACATCGATTCTCGTAACAA
* * * * *** * * *
3485085 TCTCCATTCAGTTTAAAAATGGGTAGTGAAAACACACATTCCTTTCATGAGGATGCAAGACATTG
1 TCTCCATTC-TTTTCAAGATTGG-AACCAAAA-ACACATTCC-TTCATTAGGATACATGACATTG
* * * * ** * * * *
3485150 ATGCTTTGGTGACACAAGAAAAGGTTTGCTTTCCACCGTTTCTGGTAGAATTAAAGTTTGTCT-T
62 ATGCTTTGGT-TCGCAAGAAAAGCTTTTCTTTCCACTATTTTTGATA-AATCAAAGTTCGTCTCT
* *** *
3485214 GTAAATAAGATAAACAT-GAAAAGTC-AAACTAA
125 -TAAATAAGACAAACATCG-ATTCTCGTAAC-AA
* * * * * * * * * * * *
3485246 TCCCCA-T-TTTTCAGGATTAGGCAGCATAAACATAGTCTTCTCAATATGATACATCATATTGAT
1 TCTCCATTCTTTTCAAGATT-GGAACCAAAAACACATTCCT-TCATTAGGATACATGACATTGAT
* * *
3485309 GCTTTAGTTTCGCAAGAAAAGC-TTT-TTTCTCACCGATTTTTG-TAAAGTTTAAA-TTCGTGCT
64 GCTTT-GGTTCGCAAGAAAAGCTTTTCTTTC-CA-CTATTTTTGATAAA--TCAAAGTTCGT-CT
* * * **
3485370 -TCAAATAAGACAAACATGGATTCTAGTAATGA
123 CTTAAATAAGACAAACATCGATTCTCGTAACAA
* * ** * * * * * * * * *
3485402 TCTTCCTTTATTTT-GTGACTAGGCACTATAAACATATTCTCCTCATTAAGATAAATGATATTGA
1 TC-TCCATTCTTTTCAAGA-TTGGAACCAAAAACACATTC-CTTCATTAGGATACATGACATTGA
* ** * * * * * * * *
3485466 TGATTTTCTTTTGCATGGAAATCTTTTCTTTTCC-CTATTTTTGTTAAAATCAATGCTCATC-CT
63 TG-CTTTGGTTCGCAAGAAAAGCTTTTC-TTTCCACTATTTTTGAT-AAATCAAAGTTCGTCTC-
3485529 TTAAATAAGACAAACATCGATTCTCGTAACAA
124 TTAAATAAGACAAACATCGATTCTCGTAACAA
*
3485561 TCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCGTTCAATAGGATACCA-GACATTGA
1 TCTCCATTCTTTTCAAGATT-GGAACCAAAAACACATTCC-TTCATTAGGATA-CATGACATTGA
* *
3485625 CGCTTTGGTATCGCAAGAAAAGCTTTTCTTTCCAAC-ATTTTTGATAGAATCAAAGTTTGTCTCT
63 TGCTTTGGT-TCGCAAGAAAAGCTTTTCTTTCC-ACTATTTTTGATA-AATCAAAGTTCGTCTCT
* * * *
3485689 TAAATAAGACAAACAACAATACTC-CAACTAA
125 TAAATAAGACAAACATCGATTCTCGTAAC-AA
* * * * * * * *
3485720 TCCCCATT-TTTCTCTAGATTAGACACCATAAACATAGTCCTCTCATTAGGATACATCATATTGA
1 TCTCCATTCTTT-TCAAGATTGGA-ACCAAAAACACATTCCT-TCATTAGGATACATGACATTGA
* * * * *
3485784 TGCTTTGGCTTCACATGAAAGGCTTTT-TTTCTCACCAATTTTTG-TAAAGTCTAAGTTCGTAC-
63 TGCTTTGG-TTCGCAAGAAAAGCTTTTCTTTC-CA-CTATTTTTGATAAA-TCAAAGTTCGT-CT
* * * * **
3485846 CTCAAATGAGACAAACATGGATTCTAGTAATGA
123 CTTAAATAAGACAAACATCGATTCTCGTAACAA
* ** * * * * * * *
3485879 TCTTCATTCATTTT-GTGATTAGGCACCATAAACACATTCTCCTCACTAGAATAAATGATATTGA
1 TCTCCATTC-TTTTCAAGATT-GGAACCAAAAACACATTC-CTTCATTAGGATACATGACATTGA
* ** * * * * * * *
3485943 TGATTTTCTTCTGCATGGAAATCTTTTCTTTGCC-CTATTTTCCT-TTAAATCAAAGTTCATATG
63 TGCTTTGGTTC-GCAAGAAAAGCTTTTCTTT-CCACTATTTT--TGATAAATCAAAGTTCGTCTC
* * * * * *
3486006 TTAAATAATACAAGCATTGATTCTCATAATAG
124 TTAAATAAGACAAACATCGATTCTCGTAACAA
* * *
3486038 TCTCCATTCTTTTCAAGATTTGAAAGCC-AAAACACGTTCCCTTCATTAGGATCCATGACATTGA
1 TCTCCATTCTTTTCAAGA-TTGGAA-CCAAAAACACATT-CCTTCATTAGGATACATGACATTGA
* * * * * * *
3486102 GGCTTTGGGGTCGCGAGAGAAGCATTTCTTTCCACTATTTTTTGATAGAATGAAAGTTTGTCTCT
63 TGCTTT-GGTTCGCAAGAAAAGCTTTTCTTTCCACTA-TTTTTGATA-AATCAAAGTTCGTCTCT
* *
3486167 TAAATAAGACAAACAT-GAATACTCAT-ACTAA
125 TAAATAAGACAAACATCG-ATTCTCGTAAC-AA
* * * ** * * * * * ** *
3486198 TC-CTCATTATTTTCAGGATTAGGCAGTATAAACATAGTCTTCTCAATCTGATACATCATC-TTG
1 TCTC-CATTCTTTTCAAGATT-GGAACCAAAAACACATTCCT-TCATTAGGATACATGA-CATTG
* * * * * * *
3486261 ATTCTTTGGTTTCGCAAGAAAGGCTTTT-TCTCAACAATTTTTGCA-AAGTCTAAGTTCGTGC-C
62 ATGCTTTGG-TTCGCAAGAAAAGCTTTTCTTTCCACTATTTTTG-ATAAATCAAAGTTCGT-CTC
* * * * ***
3486323 TTAAATGAGACAAACATCAATTATAGTATTGA
124 TTAAATAAGACAAACATCGATTCTCGTAACAA
* ** * * * * * * *
3486355 TCTTCATTCATTTT-GTGATTAGACACTATAAACACATTCTCCTAATTAGGATAAATGATATTGA
1 TCTCCATTC-TTTTCAAGATTGGA-ACCAAAAACACATTC-CTTCATTAGGATACATGACATTGA
* ** * * ** * * * *
3486419 TGATTTTTTTTTGCATGAAAATATTTTCTTTGCC-CTATTTTCCTTA-AAAGT-AATGCTCATC-
63 TG-CTTTGGTTCGCAAGAAAAGCTTTTCTTT-CCACTATTTT--TGATAAA-TCAAAGTTCGTCT
* * *
3486480 CTTTAAATAAGACAAGCATCGAATCTCGTAACAG
123 C-TTAAATAAGACAAACATCGATTCTCGTAACAA
* * *
3486514 TCTGCATTCATTTCAAGATTGAGATCCAAAAACACATTCCCTTCATTAGGATACATGACATTGAT
1 TCTCCATTCTTTTCAAGATTG-GAACCAAAAACACATT-CCTTCATTAGGATACATGACATTGAT
* * *
3486579 GCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCA-TCGTTTTTGATAGAATCAAAGTTTGTCTCTT
64 GCTTTGGT-TCGCAAGAAAAGCTTTTCTTTCCACT-ATTTTTGATA-AATCAAAGTTCGTCTCTT
*
3486643 AAATCAGACAAA
126 AAATAAGACAAA
3486655 AAAGAATAGT
Statistics
Matches: 3659, Mismatches: 1192, Indels: 738
0.65 0.21 0.13
Matches are distributed among these distances:
154 15 0.00
155 86 0.02
156 122 0.03
157 289 0.08
158 1028 0.28
159 1302 0.36
160 426 0.12
161 314 0.09
162 57 0.02
163 5 0.00
164 15 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (155 bp):
TCTCCATTCTTTTCAAGATTGGAACCAAAAACACATTCCTTCATTAGGATACATGACATTGATGC
TTTGGTTCGCAAGAAAAGCTTTTCTTTCCACTATTTTTGATAAATCAAAGTTCGTCTCTTAAATA
AGACAAACATCGATTCTCGTAACAA
Found at i:3488682 original size:475 final size:475
Alignment explanation
Indices: 3487781--3497554 Score: 12649
Period size: 475 Copynumber: 20.6 Consensus size: 475
3487771 CTTTAAAATC
* ** * * *
3487781 AATATTCATACAAATCCCCATT-TTTTCAGGATTAGGCAACATAAACATATTCTTGTCATTAGGA
1 AATACTCATACAAATCCCCATTCTTTTCTTGATTAGGCACCATAAACATAGTCTTCTCATTAGGA
* * * *
3487845 TACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCAACCAATTTTTGTAAAGTCTA
66 TACATGATATTGATGTTTTGGTTTTGCAAGAAAGGCTTT-TTCCCACCAATTTTTGTAAAGTCTA
* * *
3487910 AGTTTATGCCTCAAAAGAGACAAACATGGATTCTAGTGATGATCTTCATTCATATTGTGATTAGG
130 AGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGG
* * **
3487975 CACTATAAACACATTCTCTTCATTAGGATAAATGATATTGATGATTTT-TTTTGCACGGAAGGCT
195 CACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCT
* * *
3488039 TTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAGGACA-AGCGTTGATTCTC
260 TTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACACA-CATCGATTCTC
* * * * *
3488103 GTTATAGTCTCCATTCCTTTCAAGTCTGGGAAGCCAAAACACATTCTCTTCATAAAGATACATGG
324 GTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACATTCTCTTCATTAGGATACATGG
* * *
3488168 CATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTTGATAAAATCAAAGTTT
389 CATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACC-ATTTTTGATAGAATCAAAGTTT
*
3488233 GTCCCTTATATAAGACAAACATG
453 GTCTCTTATATAAGACAAACATG
*
3488256 AATACTCATACAAATCCCCATTCTTTTCTTGATTAGGCACCATAAACGTAGTCTTCTCATTAGGA
1 AATACTCATACAAATCCCCATTCTTTTCTTGATTAGGCACCATAAACATAGTCTTCTCATTAGGA
* ** *
3488321 TACACGATATTGATGTTTTGGTTTTGCAAGAAACTCATTTTCCCACCAATTTTTGTAAAGTCTAA
66 TACATGATATTGATGTTTTGGTTTTGCAAGAAAGGCTTTTTCCCACCAATTTTTGTAAAGTCTAA
* * * * * *
3488386 GTTTGTCCCTCAAATGAGACAAAGATGGATTCTAGTAAGGATTTTTATT-ATTTTGTGATTAGGC
131 GTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGC
* * * *
3488450 ACTATAAACACATTCTCCACATTAGGATAAATGATATTTAAGATTTTCTTTTGCATGAAAATCTT
196 ACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTT
* * *
3488515 TTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCTCTTAAATAAGAGACACATTGATTCTCGT
261 TTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACACACATCGATTCTCGT
*
3488580 AACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACATTC-CTTTCATTAGGATACAAGGC
326 AACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACATTCTC-TTCATTAGGATACATGGC
* * * *
3488644 ATTGATGCTTTGGTGTCACAAGAAACGCTTTCCTTTCCACCATTTTTGATATAATCAAAGTTTGT
390 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGT
* * *
3488709 CTCTTTTATTAGACAAACATT
455 CTCTTATATAAGACAAACATG
* * * ** * * *
3488730 AATTCTCATACAAATCCCGATTTTTTTCAGGATTAGGCAACATAAACATATTCTTGTCATTAGGA
1 AATACTCATACAAATCCCCATTCTTTTCTTGATTAGGCACCATAAACATAGTCTTCTCATTAGGA
* ** * ** * *
3488795 TACATGATATTGATGCTTTGGTTTCACAGGAAAGGCTTTCTTCTAATCAATTTTTGTAAAGTCCA
66 TACATGATATTGATGTTTTGGTTTTGCAAGAAAGGCTTT-TTCCCACCAATTTTTGTAAAGTCTA
* * *
3488860 AGTTTGTGCCTCAAA-GAGATAAACATGGATTCTAGGGATGATCTTCATTCATTTTTTGATTAGG
130 AGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGG
* * * * *
3488924 CACTATAAACACAATCTCTTCATTAGGATAGATGATATTGATGATTTTTTTTTTACATGGAAATC
195 CACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGA-TTTTCTTTTGCATGGAAATC
* * * *
3488989 TTTTCTTTGCCCTATTTTCCATAAAATCAAAGCTCATCCCTTAAATAAGACA-AGCATCAATTTG
259 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACACA-CATCGA-TTC
* *
3489053 TCGTAACAGTCTCCATTCCTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACAT
322 TCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACATTCTCTTCATTAGGATACAT
* * *
3489118 AGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTCCTTTCCATCATGTTTT-ATAGAATCAAAGT
387 GGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCAT-TTTTGATAGAATCAAAGT
* * * *
3489182 TTGTCTCTTATATTAGGCAAATATT
451 TTGTCTCTTATATAAGACAAACATG
* ** * * * * * *
3489207 AATACTCATACAAATCCCCATTTTTTTCAGGAGTAGGCAACATAAACATATTCATGTCATTAGAA
1 AATACTCATACAAATCCCCATTCTTTTCTTGATTAGGCACCATAAACATAGTCTTCTCATTAGGA
* * * * * * *
3489272 TACACGATATTGAAGCTTTGGTTTCGTAAGAAAGACTTTCTTCCAACCAA-TTTTGTAAAGTCTA
66 TACATGATATTGATGTTTTGGTTTTGCAAGAAAGGCTTT-TTCCCACCAATTTTTGTAAAGTCTA
* *
3489336 AGTTTGTGCCTCAAATGAGACAAGCATGGATTCTAGTGATGATCTTCATTTATTTTGTGATTAGG
130 AGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGG
* * *
3489401 CACTATAAACACATTCTCTTCATTAGGATAAATGATATTGAAGATTTTTTTTTTTGCATGGAAAT
195 CACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGA--TTTTCTTTTGCATGGAAAT
* * *
3489466 CTTTTCTTTCCCCTACTTTCCTTAAAATCAAAGTTCATCCCTTAAATAACACA-AGCATCGATTC
258 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACACA-CATCGATTC
* * * * *
3489530 TCATAACAGTCTCCATTCCTTTCAAGATTGGGAAGCCAAAACACATTCTCTTCATAAGCATTCAT
322 TCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACATTCTCTTCATTAGGATACAT
* * * * *
3489595 GCCATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCTATCGTTTTTGATAGAATCAAAGTT
387 GGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTT
* * *
3489660 TATCTCTTATATAAGAAAAACATT
452 TGTCTCTTATATAAGACAAACATG
*
3489684 AATACTCATACAAATCCCCCTTCTTTTCTTGATTAGGCACCATAAACATAGTCTTCTCATTAGGA
1 AATACTCATACAAATCCCCATTCTTTTCTTGATTAGGCACCATAAACATAGTCTTCTCATTAGGA
* * * * *
3489749 TACACGATATTGATGTTTTGGTTCTGCAAGAAACGCATTTTCCCACCAAATTTTGTAAAGTCTAA
66 TACATGATATTGATGTTTTGGTTTTGCAAGAAAGGCTTTTTCCCACCAATTTTTGTAAAGTCTAA
*
3489814 GTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTGATGATCTTCATT-ATTTTTTGATTAGGC
131 GTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGC
* *
3489878 ACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTTGAAATCTT
196 ACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTT
* *
3489943 TTCTTTGCCTTATTTTCCTTAAAATCACAGTTCATCCCTTAAATAAGACA-ACCATCGATTCTCG
261 TTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACACA-CATCGATTCTCG
*
3490007 TAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACATTCTCTTCATTAGGATACATGGA
325 TAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACATTCTCTTCATTAGGATACATGGC
* * *
3490072 ATTGATGCTTTGGTGTCGCAAAAAAAGCTTTTCTTTCCTCCGTTTTTGATAGAATCAAAGTTTGT
390 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGT
* *
3490137 GTCTTCTATAAGACAAACATG
455 CTCTTATATAAGACAAACATG
*
3490158 AATACGCATACAAATCCCCATTCTTTTCTTGATTAGGCACCATAAACATAGTCTTCTCATTAGGA
1 AATACTCATACAAATCCCCATTCTTTTCTTGATTAGGCACCATAAACATAGTCTTCTCATTAGGA
* * * * ** *
3490223 CACATTATATTGATGCTTTGGATTTGCAAGAAATGTTTTTTTTCCCACCAATTTTTGTAAGGTCT
66 TACATGATATTGATGTTTTGGTTTTGCAAGAAA-G-GCTTTTTCCCACCAATTTTTGTAAAGTCT
* * *
3490288 AAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTGATCAACTTGATTCATTTTGTGATTAG
129 AAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTGATGATCTTCATTCATTTTGTGATTAG
* * * * *
3490353 GCACTAGAAAGACATTGTCCTCAATAGGATAAAATGATATTGATGATTTTTTTTTTTGCATGGAA
194 GCACTATAAACACATTCTCCTCATTAGGAT-AAATGATATTGATGA--TTTTCTTTTGCATGGAA
* **
3490418 ATCTTTTCTTTCCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACA-AGTGTCGAT
256 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACACA-CATCGAT
*
3490482 TCTCGTAACAGTCTCCATTCCTTTTAAGACTGGGAAGCCAAAACACATTCTCTTCATTAGGATAC
320 TCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACATTCTCTTCATTAGGATAC
* * *
3490547 ATCGCATTGATGCTTTGGTGTCACAACAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAG
385 ATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAG
3490612 TTTGTCTCTTATATAAGACAAACATG
450 TTTGTCTCTTATATAAGACAAACATG
* * * * *
3490638 AATACTCATAGAAATCTCCATTCTTTTCTTGGTTAGGCACCATAAATATAGTCTTCT-TTCTAGG
1 AATACTCATACAAATCCCCATTCTTTTCTTGATTAGGCACCATAAACATAGTCTTCTCAT-TAGG
** * *
3490702 ATACATGATATTGATGTTTTTCTTGGTTTTGCTGGAAAGGCATTTTCCTACCACA-TTTTGTAAA
65 ATACATGATATTGATG---TT-TTGGTTTTGCAAGAAAGGCTTTTTCCCACCA-ATTTTTGTAAA
* * * * * *
3490766 GTCTAAGTTTATGCCTTAAATGTGACAAACTTGGATTCTAGTGATGATATTAATTCATTTTGTGA
125 GTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTGATGATCTTCATTCATTTTGTGA
* * * * * *
3490831 TTAGGCTCCAGAAACACATTCTCCTCAATAAGATAAATGATATTGATGATTTTCTTTCGCATGGA
190 TTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGA
* * * *
3490896 AATCTTTT-TTTCGCCCTATTTTCCTTAAAATCAAAGTTCAT-CCTTAAAAAATAC-CTGCATCA
255 AATCTTTTCTTT-GCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAC-ACATCG
* ** * * * *
3490958 ATTCTCGTAACAGTCTCCGTTCCTTTCTTGATTGGGAAGCCAAATCAAATTCGCTTCATTAGGAT
318 ATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACATTCTCTTCATTAGGAT
* * *
3491023 ATATGGCATTGATGCTTTTGTGTCGCAAGAAAAGCTTTTCCTTTCCATCATTTTTGATAGAATCA
383 ACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTT-CTTTCCACCATTTTTGATAGAATCA
* *
3491088 AAATTTGCCTCTTATATAAGACAAACATG
447 AAGTTTGTCTCTTATATAAGACAAACATG
* * *
3491117 AATACTCATATAAATCCCCATTCTTTTCTTGATTAGGCACCATAAA-ATAGCCTTCTGATTA-G-
1 AATACTCATACAAATCCCCATTCTTTTCTTGATTAGGCACCATAAACATAGTCTTCTCATTAGGA
* * * *
3491179 -----GATA--G--GTTTTAGTTATGCAAGAAGGGCATTTTCCCACCAATTTTTGTAAAGTCTAA
66 TACATGATATTGATGTTTTGGTTTTGCAAGAAAGGCTTTTTCCCACCAATTTTTGTAAAGTCTAA
* * *
3491235 GTTTGTGCCTCAAATGAGACAAACATAGATTCTAGTGATGATATTCATTTATTTTGTGATTAGGC
131 GTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGC
* * * * * *
3491300 ACGATAAACACATTCTCATCTTTAGGATAAATGGTATTGATGATTTTCTTTTACATCGAAATCTT
196 ACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTT
* * * *
3491365 TTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCTTCCCTTAAATAAGACACGCATCGATTCTCAT
261 TTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACACACATCGATTCTCGT
* * * * *
3491430 AACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACATATTCCCTTCGTTAGGATCCATTGCA
326 AACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACATTCTCTTCATTAGGATACATGGCA
*
3491494 TTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTC
391 TTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTC
3491559 TCTTATATAAGACAAACAT-
456 TCTTATATAAGACAAACATG
* * ** * *
3491578 --TACTAATGCAAATCCCCATT-TGTTTCAGGATTAGGCACCATAGACATAATCTTCTCATTAGG
1 AATACTCATACAAATCCCCATTCT-TTTCTTGATTAGGCACCATAAACATAGTCTTCTCATTAGG
* ** * *
3491640 ATAAACCATATTGATGCTTTT-GTTTCGCAAGAAAGGCTTCTTTCCCACCAATTATTGTAAAGTC
65 ATACATGATATTGATG-TTTTGGTTTTGCAAGAAAGGCTT-TTTCCCACCAATTTTTGTAAAGTC
* *
3491704 TAAGTTTGTGCCTCATATGAGACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTT
128 TAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTGATGATCTTCATTCATTTTGTGA-TT
*
3491769 AGGCACTATAAACACATTC-CCTTCATCAGGATAAATGATATTGATGATTTT-TTTTGCATGGAA
192 AGGCACTATAAACACATTCTCC-TCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAA
* * * *
3491832 AACTTTTCTTTGCCGTATTTT-CTTGAAAATCAAAGTTCATCCCTTAAATAAGATA-AGCATCAA
256 ATCTTTTCTTTGCCCTATTTTCCTT-AAAATCAAAGTTCATCCCTTAAATAAGACACA-CATCGA
* * * *
3491895 TTTTCGTAACAGTCTCCATTCCTTTCAAGACTAGGAAGCCAAAACACATTCTCTTCACTAGAATA
319 TTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACATTCTCTTCATTAGGATA
* * ***
3491960 CATGGCATTGATGCTTTGGTGTCACAAAAAAAGCTTTTCTTTCCTTTATTTTTGATAGAATCAAA
384 CATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAA
*
3492025 GTGTGTCTCTTATATAAGACAAACATG
449 GTTTGTCTCTTATATAAGACAAACATG
*
3492052 AATACGCATACAAATCCCCATTCTTTTCTTGATTAGGCACCATAAACATAGTCTTCTCATTAGGA
1 AATACTCATACAAATCCCCATTCTTTTCTTGATTAGGCACCATAAACATAGTCTTCTCATTAGGA
* * * * *
3492117 TACATTATATTGATGCTTTGGATTTGCAAGAAATGCTTTTTTCCCACCAATTTTTGTAAGGTCTA
66 TACATGATATTGATGTTTTGGTTTTGCAAGAAAGGC-TTTTTCCCACCAATTTTTGTAAAGTCTA
* * * *
3492182 AGTTTATGCCTTAAATGAGACAAACATGGATTCTAGTGATGAACTTGATTCATTTTGTGATTAGG
130 AGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGG
* * * * *
3492247 CACTAGAAAGACATTCTCCTCAATAGGATAAATGATATTGACGATTTTCTTTTCCATGGAAATCT
195 CACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCT
* * ** *
3492312 TATCTTTGCCCTATTTT-CTTAAAATCAAAATTCATCCCTTAAATAAGACAGGCATCAATTCTCG
260 TTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACACACATCGATTCTCG
* * * *
3492376 TAACAGTCTCCATTCCTTTCAAGATTAGGAAGCCAAAACCCATT-TCCTTCATTAGGATACAAGG
325 TAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACATTCT-CTTCATTAGGATACATGG
* * **** *
3492440 C-TCTGATGCTTTGGTGTCGTAAG-AAAGCTTTCCTTTTTGTCATTTTTTATAGAATCAAAGTTT
389 CAT-TGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTT
* * * *
3492503 TTCTCCTATATTAGACAAACATT
453 GTCTCTTATATAAGACAAACATG
* ** ** * *
3492526 AATACTCATGCAAATCCCCATT-TTTTCAGGAGCAGGCAACATAAACATATTC-TCGTCATTAGG
1 AATACTCATACAAATCCCCATTCTTTTCTTGATTAGGCACCATAAACATAGTCTTC-TCATTAGG
* * * * *
3492589 ATACACGATATTTATGCTTTGGTTTAGCAAAAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCT
65 ATACATGATATTGATGTTTTGGTTTTGCAAGAAAGGCTTT-TTCCCACCAATTTTTGTAAAGTCT
* * * *
3492654 AAGTTTGTGTCTCAAATGAGAAAAACATGGATTCCTA-TGATGATCCTCATTCATTTTTTGATTA
129 AAGTTTGTGCCTCAAATGAGACAAACATGGATT-CTAGTGATGATCTTCATTCATTTTGTGATTA
* * * *
3492718 GGCACTATAAACACAATCTCTTGATTAGGATAAATGATATTGATGATTTTTTTTTTTGCATGGAA
193 GGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGA--TTTTCTTTTGCATGGAA
* **
3492783 ATCTTTTCTTTCCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACA-AGTGTCGAT
256 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACACA-CATCGAT
*
3492847 TCTCGTAACAGTCTCCATTCCTTTTAAGACTGGGAAGCCAAAACACATTCTCTTCATTAGGATAC
320 TCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACATTCTCTTCATTAGGATAC
* * * *
3492912 ATCGCATTGATGCATTGGTGTCACAACAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAG
385 ATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAG
* * *
3492977 TTTGTCTATTATAGAAGACAAATATG
450 TTTGTCTCTTATATAAGACAAACATG
* * * * * * * * **
3493003 AATACTCAAAGAAATCTCCATTCTTTCCTCGGTTACGCACCATAAACCTAGTCTTCTTTTTAGGA
1 AATACTCATACAAATCCCCATTCTTTTCTTGATTAGGCACCATAAACATAGTCTTCTCATTAGGA
* * *
3493068 TACATGATATTGATGTTTTGGTTTTGTAGGAAAGGCATTTTCCCACCAATTTTTGTAAAGTCTAA
66 TACATGATATTGATGTTTTGGTTTTGCAAGAAAGGCTTTTTCCCACCAATTTTTGTAAAGTCTAA
* * * * *
3493133 GCTTGTGCCTCAAAAGTGACAAACTTGGATTCTAGTGATGATCTTAATTCATTTTGTGATTAGGC
131 GTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGC
* * * * *
3493198 TCCAGAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTTTCGCATGGAAATCTT
196 ACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTT
* * * * * *
3493263 TT-TCTTGCCCTATTTTCCTTAAAATCAAAGGTCATCCCATAAATAAGTCCCGCATCGACTCTCG
261 TTCT-TTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACACACATCGATTCTCG
* * * * * *
3493327 TAACAGTCTCCATTCCTTTCATGATTGGGAAGCCAAATCAAATTCCCTTCATTAGGATACATGGA
325 TAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACATTCTCTTCATTAGGATACATGGC
* * * * *
3493392 ATTGATGCTTTGGTGTCGCAAGAAAAGATTTCCTTTCGATCATTTTTGATAGAATCAAAGTTTGC
390 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGT
3493457 CTCTTATATAAGACAAACATG
455 CTCTTATATAAGACAAACATG
* *
3493478 AATACTCATACAAATCCCCATT-TTTT-TTAGGATTAGGCACCATAGACATAATCTTCTCATTAG
1 AATACTCATACAAATCCCCATTCTTTTCTT--GATTAGGCACCATAAACATAGTCTTCTCATTAG
* ** * *
3493541 GATAAACCATATTGATGCTTTT-GTTTCGCAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGT
64 GATACATGATATTGATG-TTTTGGTTTTGCAAGAAAGGC-TTTTTCCCACCAATTTTTGTAAAGT
* * * * *
3493605 CTATGTTTGCGTCTCAAATGATACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATT
127 CTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTGATGATCTTCATTCATTTTGTGATT
*
3493670 AGGCACTATAAACACATTC-CCTTCATTAGGATAAATGATATTGATGATTTTTTTTTTGCATGGA
192 AGGCACTATAAACACATTCTCC-TCATTAGGATAAATGATATTGATGA-TTTTCTTTTGCATGGA
* * *
3493734 AATGTTTTCTTTGCCCTATTTT-CTTAAAAATCAAAGTTCATCCCTTAAATAAGACA-AGTATTG
255 AATCTTTTCTTTGCCCTATTTTCCTT-AAAATCAAAGTTCATCCCTTAAATAAGACACA-CATCG
3493797 ATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACATTCTCTTCATTAGGAT
318 ATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACATTCTCTTCATTAGGAT
* * **
3493862 ACATGGCATTGATGCTTTGGTGTCGCAAAAAAAGCTTTTCTTTCCTCTGTTTTTGATAGAATCAA
383 ACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAA
3493927 AGTTTGTCTCTTATATAAGACAAACATG
448 AGTTTGTCTCTTATATAAGACAAACATG
* * *
3493955 AATACGCATACAAAT-CCCATTCTTTTTGTTGATTAGGCACCATAAACATAGTCTTCTCATTAGC
1 AATACTCATACAAATCCCCATTC-TTTTCTTGATTAGGCACCATAAACATAGTCTTCTCATTAGG
* * * * * *
3494019 ATACATTATATTGATGCTTTGGATTTGCCAGAAATGCTTTTTTCCCACCAATTTTTGTAAGGTCT
65 ATACATGATATTGATGTTTTGGTTTTGCAAGAAAGGC-TTTTTCCCACCAATTTTTGTAAAGTCT
* * * * **
3494084 AAGTTTGTGGCTCAAATGAGACAAACATGGATTTTAGCGATGAACTTGGTTCATTTTGTGATTAG
129 AAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTGATGATCTTCATTCATTTTGTGATTAG
* * *
3494149 GCACTAGAAAGACATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATC
194 GCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATC
* * * * *
3494214 TTATCTTTGCCCTATTTTTCTTAAAATCAAAATTCATCCCTTGAATAAGACAGACATCGATTCTC
259 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACACACATCGATTCTC
* *
3494279 GTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACTTTC-CTTTTATTAGGATACATG
324 GTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACATTCTC-TTCATTAGGATACATG
* * * * * *
3494343 GCATAGACGCTTTGGTGTCACAAGAAACGCTTTTCTTTACACCGTTTTTGATAGAATCAAAGTTT
388 GCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTT
* * * *
3494408 ATGTCTTATATTAGACAAACATT
453 GTCTCTTATATAAGACAAACATG
* * * *
3494431 AATACTCATACAAATCCCCATT-TTTT-TGGGATTAGGCAACATAAACATATTCTTGTCATTAGG
1 AATACTCATACAAATCCCCATTCTTTTCT-TGATTAGGCACCATAAACATAGTCTTCTCATTAGG
* * ***
3494494 ATACATGATATTGATGCTTT-GTTTCGCAAGAAAGGCTTTCTTTTAACCAATTTTTGTAAAGTCT
65 ATACATGATATTGATGTTTTGGTTTTGCAAGAAAGGCTTT-TTCCCACCAATTTTTGTAAAGTCT
* * *
3494558 AAGTTTATGCCTCAAATAAGACAAACAAGGATTCTAGTGATGATCTTCATTCATTTTGTGATTAG
129 AAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTGATGATCTTCATTCATTTTGTGATTAG
* * *
3494623 GCACTATAAACACATTC-CCTTCATTAGGATAAATGATATTGAAGACTTTTTTTTTTGCATAGAA
194 GCACTATAAACACATTCTCC-TCATTAGGATAAATGATATTGATGA--TTTTCTTTTGCATGGAA
* * *
3494687 ATCTTTTCTTTGCCCCATTTT-CTTGAAAGTCAAAGTTCATGCCTTAAATAAGACAGC-CATCGA
256 ATCTTTTCTTTGCCCTATTTTCCTT-AAAATCAAAGTTCATCCCTTAAATAAGACA-CACATCGA
* * * *
3494750 TTCTCGTAACGGTCTCCATTCCGTTT-AAGGCTAGGAAGCCGAAACACATTCTCTTCATTAGGAT
319 TTCTCGTAACAGTCTCCATTCC-TTTCAAGACTGGGAAGCCAAAACACATTCTCTTCATTAGGAT
* * * *
3494814 ACATTGCATTGATGCTTTGCTGTCACAACAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAA
383 ACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAA
3494879 AGTTTGTCTCTTATATAAGACAAACATG
448 AGTTTGTCTCTTATATAAGACAAACATG
* * * * * * **
3494907 AATAGTCATAGAAATCTCCATTCTTTTCTTGGTTAGGCAGCATAAACTTAGTCTTCTTTTTAGGA
1 AATACTCATACAAATCCCCATTCTTTTCTTGATTAGGCACCATAAACATAGTCTTCTCATTAGGA
* * *
3494972 TACATGATAATAATGTTTTGGTTTTGCAAGAAAGG-TATTTTCCCACCAATTTTTGTAAAGTATA
66 TACATGATATTGATGTTTTGGTTTTGCAAGAAAGGCT-TTTTCCCACCAATTTTTGTAAAGTCTA
* * *
3495036 AGTTTGTGCCTCAAATGTGACAAACTTGGATTCTAGTGATGATCTTAATTCATTTTGTGATTAGG
130 AGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGG
* * * * * * * **
3495101 CTCCAGAAACACATTTTCCTCAATAGGATAAATGATATTGACGATTTTATTTCACATGGAAATCT
195 CACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCT
* * * * * * *
3495166 TTCCTTTGCCCAATTTTCCTTAAAATCAAAGTTCTTCCCCTAAATAAGACCCGCATCGATTCTTG
260 TTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACACACATCGATTCTCG
* * * * * * *
3495231 TAATAGTCTCCGTTTCTTTCATGACTGGGAAGCCAAATCAAATTCCCTTCATTAGGATACATGGC
325 TAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACATTCTCTTCATTAGGATACATGGC
* * * *
3495296 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTCCTTTCGATCATTTTTGATAGAATCAAAGTTTGC
390 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGT
* *
3495361 CTCTTATATACGACAAACATT
455 CTCTTATATAAGACAAACATG
* *
3495382 AATACTCATACAAATCCCCATTCTTTTCTTGATTAGGCACCATAAACATAGCCTTCTGATTAGGA
1 AATACTCATACAAATCCCCATTCTTTTCTTGATTAGGCACCATAAACATAGTCTTCTCATTAGGA
* * * * * * *
3495447 TAGACGATATTGACGTTTTAGTTATGCAAGAAAGGCATTTTCCCACCAATTTTTGTAAAGCCTAA
66 TACATGATATTGATGTTTTGGTTTTGCAAGAAAGGCTTTTTCCCACCAATTTTTGTAAAGTCTAA
* **
3495512 GTTTGTGCCACAAATGAGACAAACATATATTCTAGTGATGATCTTCATTCATTTTGTGATTA-GC
131 GTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGC
* * * * *
3495576 ACTATAAACACATTCTCCTCTTTAGGATAAATGGTATTAATGATTTTCTTTTACATGGAAATCCT
196 ACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTT
* * * * *
3495641 TTCTTTGCCCTATTTTTCTTAAAATCAAAGTTCTTCCCGTAAATAAGACACGCATCGATTCTCAT
261 TTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACACACATCGATTCTCGT
* *
3495706 AACAATCTCCATTCCTTTCGAGACTGGGAAGCCAAAACACATTCTCTTCATTAGGATACATGGCA
326 AACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACATTCTCTTCATTAGGATACATGGCA
* * * **
3495771 TTGATGCTTTGGTGTCGCAAAAAAAGTTTTTCTTTCCTCTGTTTTTGATAGAATCAAAGTTTGTC
391 TTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTC
3495836 TCTTATATAAGACAAACATG
456 TCTTATATAAGACAAACATG
* * *
3495856 AATACGCATACAAAT-CCCATTCTTTTTGTTGATTAGGCACCATAAACATAGTCTTCTCATTAGC
1 AATACTCATACAAATCCCCATTC-TTTTCTTGATTAGGCACCATAAACATAGTCTTCTCATTAGG
* * * * * *
3495920 ATACATTATATTGATGCTTTGGATTTGCCAGAAATGCTTTTTTCCCACCAATTTTTGTAAGGTCT
65 ATACATGATATTGATGTTTTGGTTTTGCAAGAAAGGC-TTTTTCCCACCAATTTTTGTAAAGTCT
* * * * **
3495985 AAGTTTGTGGCTCAAATGAGACAAACATGGATTTTAGCGATGAACTTGGTTCATTTTGTGATTAG
129 AAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTGATGATCTTCATTCATTTTGTGATTAG
* * *
3496050 GCACTAGAAAGACATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATC
194 GCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATC
* * * * *
3496115 TTATCTTTGCCCTATTTTTCTTAAAATCAAAATTCATCCCTTGAATAAGACAGACATCGATTCTC
259 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACACACATCGATTCTC
* *
3496180 GTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACTTTC-CTTTTATTAGGATACATG
324 GTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACATTCTC-TTCATTAGGATACATG
* * * * * *
3496244 GCATAGACGCTTTGGTGTCACAAGAAACGCTTTTCTTTACACCGTTTTTGATAGAATCAAAGTTT
388 GCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTT
* * *
3496309 ATCTCTTATATTAGACAAACATT
453 GTCTCTTATATAAGACAAACATG
* * * *
3496332 AATACTCATACAAATCCCCATT-TTTT-TGGGATTAGGCAACATAAACATATTCTTGTCATTAGG
1 AATACTCATACAAATCCCCATTCTTTTCT-TGATTAGGCACCATAAACATAGTCTTCTCATTAGG
* * ***
3496395 ATACATGATATTGATGCTTT-GTTTCGCAAGAAAGGCTTTCTTTTAACCAATTTTTGTAAAGTCT
65 ATACATGATATTGATGTTTTGGTTTTGCAAGAAAGGCTTT-TTCCCACCAATTTTTGTAAAGTCT
* * * *
3496459 AAGTTTGTGCCTCAAATGTGGCAAACTTGGATTCTAGAGATGATCTTCATTCATTTTGTGATTAG
129 AAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTGATGATCTTCATTCATTTTGTGATTAG
*
3496524 GCACTATAAACACATTC-CCTTCATTAGGATAAATGATATTGATGATTTTTTTTTTGCATGGAAA
194 GCACTATAAACACATTCTCC-TCATTAGGATAAATGATATTGATGA-TTTTCTTTTGCATGGAAA
* *
3496588 ACTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACA-AGCGTCGATT
257 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACACA-CATCGATT
3496652 CTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACATTCTCTTCATTAGGATACA
321 CTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACATTCTCTTCATTAGGATACA
* * *
3496717 TTGCATTGATGCTTTGGTGTCACAACAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGT
386 TGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGT
3496782 TTGTCTCTTATATAAGACAAACATG
451 TTGTCTCTTATATAAGACAAACATG
* * * * * * **
3496807 AATAGTCATAGAAATCTCCATTCTTTTCTTGGTTAGGCAGCATAAACTTAGTCTTCTTTTTAGGA
1 AATACTCATACAAATCCCCATTCTTTTCTTGATTAGGCACCATAAACATAGTCTTCTCATTAGGA
* *
3496872 TACATGATATTAATGTTTTGGTTTTGCAAGAAAGG-TATTTTCCCACCAATTTTTGTAAAGTATA
66 TACATGATATTGATGTTTTGGTTTTGCAAGAAAGGCT-TTTTCCCACCAATTTTTGTAAAGTCTA
** * * *
3496936 AGTTTGTGCCTCAAATGTTACAAACTTGGATTCTAGTGATGATCTTAATTCATTTTGTGATTACG
130 AGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGG
* * * * * **
3497001 CTCCAGAAACACATTTTCCTCAATAGGATAAATGATATTGATGATTTTCTTTCACATGGAAATCT
195 CACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCT
* * * * * * *
3497066 TTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCCTAAACAAGACCCGCAACGATTCTTG
260 TTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACACACATCGATTCTCG
* ** * * * *
3497131 TAATAGTCTCTGTTCCTTTCATGACTGGGAAGCCAAATCAAATTCCCTTCATTAGGATACATGGC
325 TAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACATTCTCTTCATTAGGATACATGGC
* * * * *
3497196 ATTGATGCTTTGGTGTTGCAAGAAAAGCTTTCCTTTCGATCATTTTTGATAGAATCAAAGTTTGC
390 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGT
* *
3497261 CTCTTATATACGACAAACATT
455 CTCTTATATAAGACAAACATG
* *
3497282 AATACTCATACAAATCCCCATTCTTTTCTTGATTAGGCACCATAAACATAGCCTTCTGATTAGGA
1 AATACTCATACAAATCCCCATTCTTTTCTTGATTAGGCACCATAAACATAGTCTTCTCATTAGGA
* * ** * * * *
3497347 TAGACGATATTGACATTTTAGTTATGCAAGAAAGGCATTTTCCCACCAATTTTTGTAAAGCCTAA
66 TACATGATATTGATGTTTTGGTTTTGCAAGAAAGGCTTTTTCCCACCAATTTTTGTAAAGTCTAA
** * *
3497412 GTTTGTGCCTCAAATGAGACAAACATATATTCTAGTGACGATTTTCATTCATTTTGTGATTAGGC
131 GTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGC
* * * *
3497477 ACTATAAACACATTCTCCTCTTTAGGATAAATGGTATTGATGATTTTCTTTTACATGGAAATCCT
196 ACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTT
*
3497542 TTCTTTGCACTAT
261 TTCTTTGCCCTAT
3497555 AAACACGTAT
Statistics
Matches: 8091, Mismatches: 1072, Indels: 272
0.86 0.11 0.03
Matches are distributed among these distances:
458 1 0.00
459 36 0.00
460 12 0.00
461 1 0.00
462 51 0.01
463 244 0.03
464 48 0.01
465 1 0.00
467 4 0.00
469 2 0.00
471 22 0.00
472 181 0.02
473 350 0.04
474 1174 0.15
475 2038 0.25
476 1623 0.20
477 1433 0.18
478 296 0.04
479 150 0.02
480 289 0.04
481 15 0.00
482 104 0.01
483 3 0.00
484 13 0.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (475 bp):
AATACTCATACAAATCCCCATTCTTTTCTTGATTAGGCACCATAAACATAGTCTTCTCATTAGGA
TACATGATATTGATGTTTTGGTTTTGCAAGAAAGGCTTTTTCCCACCAATTTTTGTAAAGTCTAA
GTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGC
ACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTT
TTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACACACATCGATTCTCGT
AACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACATTCTCTTCATTAGGATACATGGCA
TTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTC
TCTTATATAAGACAAACATG
Found at i:3488815 original size:159 final size:157
Alignment explanation
Indices: 3487786--3496893 Score: 867
Period size: 159 Copynumber: 57.5 Consensus size: 157
3487776 AAATCAATAT
* *
3487786 TCATACA-AATCCCCA-TTTTTTCAGGATTAGGCAACATAAACATATTCTTGTCATTAGGATACA
1 TCATACACAATCTCCATTTTTTTCAGGATTAGGCAACATAAACACATTCTT-TCATTAGGATACA
* * * *
3487849 CGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTT-C-TTCCAACCAATTTTTG-TAAAGTCTAA
65 TGATATTGATGCTTTGGTGTCACAAGAAA-GCTTTCCTTTCC-ACC-ATTTTTGATAAA-TCAAA
* * ** **
3487911 GTTTATGC-CTCAAAAGAGACAAACATGGATTC
126 GTTTGT-CTCTTAAATTAGACAAACATTAATTC
* ** * * *
3487943 T-AGT-GATGATCTTCATTCATATT--GTGATTAGGC-ACTATAAACACATTCTCTTCATTAGGA
1 TCA-TACACAATCTCCATT-TTTTTCAG-GATTAGGCAAC-ATAAACACATTCT-TTCATTAGGA
* * ** * * * * * *
3488003 TAAATGATATTGATGATTTTTTTTGCAC-GGAAGGCTTTTCTTTGCC-CTATTTTCCTTA-AAAT
61 TACATGATATTGATGCTTTGGTGT-CACAAGAAAGCTTTCCTTT-CCACCATTTT--TGATAAAT
** * * * *
3488065 CAAAGTTCATCCCTTAAA-TAGGACAAGCGTTGATTC
122 CAAAGTTTGTCTCTTAAATTA-GACAAACATTAATTC
* * * * ** * * * *
3488101 TCGT-TATAGTCTCCATTCCTTTCAAG-TCT-GGGAAGCCA-AAACACATTCTCTTCATAAAGAT
1 TCATACACAATCTCCATTTTTTTCAGGAT-TAGGCAA--CATAAACACATTCT-TTCATTAGGAT
** * *
3488162 ACATGGCATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTTGATAAAATCA
62 ACATGATATTGATGCTTTGGTGTCACAAG-AAAGCTTTCCTTTCCACC-ATTTTTGAT-AAATCA
* * * * *
3488227 AAGTTTGTCCCTTATATAAGACAAACATGAATAC
124 AAGTTTGTCTCTTAAATTAGACAAACATTAATTC
* * ** * ** *
3488261 TCATACA-AATCCCCATTCTTTTCTTGATTAGGCACCATAAACGTAGTCTTCTCATTAGGATACA
1 TCATACACAATCTCCATTTTTTTCAGGATTAGGCAACATAAACACATTCTT-TCATTAGGATACA
* * * ** * *
3488325 CGATATTGATGTTTTGGTTTTGCAAGAAA-CTCATT--TTCCCACCAATTTTTG-TAAAGTCTAA
65 TGATATTGATGCTTTGGTGTCACAAGAAAGCT--TTCCTTTCCACC-ATTTTTGATAAA-TCAAA
* * * * **
3488386 GTTTGTCCCTCAAATGAGACAAAGATGGATTC
126 GTTTGTCTCTTAAATTAGACAAACATTAATTC
** * ** * **
3488418 T-AGTA-AGGATTTTTATTATTTT--GTGATTAGGC-ACTATAAACACATTCTCCACATTAGGAT
1 TCA-TACACAATCTCCATTTTTTTCAG-GATTAGGCAAC-ATAAACACATTCT-TTCATTAGGAT
* * * * ** * ** * * * * *
3488478 AAATGATATTTAAGATTTTCTTTTGCATGAAAATCTTTTCTTTGCC-CTATTTTCCTTA-AAATC
62 ACATGATATTGATGCTTTGGTGTCACAAG-AAAGCTTTCCTTT-CCACCATTTT--TGATAAATC
** * * * *
3488541 AAAGTTCATCTCTTAAATAAGAGACACATTGATTC
123 AAAGTTTGTCTCTTAAATTAGACAAACATTAATTC
* * ** * * *
3488576 TCGTA-ACAGTCTCCATTCCTTTCAAGACT-GGGAAGCCA-AAACACATTCCTTTCATTAGGATA
1 TCATACACAATCTCCATTTTTTTCAGGATTAGGCAA--CATAAACACATT-CTTTCATTAGGATA
* **
3488638 CAAGGCATTGATGCTTTGGTGTCACAAGAAACGCTTTCCTTTCCACCATTTTTGATATAATCAAA
63 CATGATATTGATGCTTTGGTGTCACAAGAAA-GCTTTCCTTTCCACCATTTTTGATA-AATCAAA
**
3488703 GTTTGTCTCTTTTATTAGACAAACATTAATTC
126 GTTTGTCTCTTAAATTAGACAAACATTAATTC
*
3488735 TCATACA-AATC-CCGATTTTTTTCAGGATTAGGCAACATAAACATATTCTTGTCATTAGGATAC
1 TCATACACAATCTCC-ATTTTTTTCAGGATTAGGCAACATAAACACATTCTT-TCATTAGGATAC
* * * * *
3488798 ATGATATTGATGCTTTGGTTTCACAGGAAAGGCTTT-C-TTCTAATCAATTTTTG-TAAAGTCCA
64 ATGATATTGATGCTTTGGTGTCACAAGAAA-GCTTTCCTTTC-CA-CCATTTTTGATAAA-TCAA
* * * **
3488860 AGTTTGTGC-CTCAAA-GAGATAAACATGGATTC
125 AGTTTGT-CTCTTAAATTAGACAAACATTAATTC
*** ** * * *
3488892 T-AGGGATGATCTTCATTCATTTTT--TGATTAGGC-ACTATAAACACAATCTCTTCATTAGGAT
1 TCATACACAATCTCCATT--TTTTTCAGGATTAGGCAAC-ATAAACACATTCT-TTCATTAGGAT
* * ** * * * * * * **
3488953 AGATGATATTGATGATTTTTTTTTTACATGGAAATCTTTTCTTTGCC-CTATTTTCCATAAAATC
62 ACATGATATTGATG-CTTTGGTGTCACA-AGAAAGCTTTCCTTT-CCACCATTTTTGAT-AAATC
* ** * * * * *
3489017 AAAGCTCATCCCTTAAATAAGACAAGCATCAATTTG
123 AAAGTTTGTCTCTTAAATTAGACAAACATTAA-TTC
* * ** * * *
3489053 TCGTA-ACAGTCTCCATTCCTTTCAAGATT-GGGAAGCCA-AAACACATTCCCTTCATTAGGATA
1 TCATACACAATCTCCATTTTTTTCAGGATTAGGCAA--CATAAACACATT-CTTTCATTAGGATA
* * *
3489115 CAT-AGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTCCTTTCCATCATGTTTT-ATAGAATCA
63 CATGA-TATTGATGCTTTGGTGTCACAAG-AAAGCTTTCCTTTCCACCAT-TTTTGATA-AATCA
* * * *
3489178 AAGTTTGTCTCTTATATTAGGCAAATATTAATAC
124 AAGTTTGTCTCTTAAATTAGACAAACATTAATTC
* * * * *
3489212 TCATACA-AATCCCCATTTTTTTCAGGAGTAGGCAACATAAACATATTCATGTCATTAGAATACA
1 TCATACACAATCTCCATTTTTTTCAGGATTAGGCAACATAAACACATTC-TTTCATTAGGATACA
* * * ** * *
3489276 CGATATTGAAGCTTTGGTTTCGTAAGAAAGACTTT-C-TTCCAACCAATTTTG-TAAAGTCTAAG
65 TGATATTGATGCTTTGGTGTCACAAGAAAG-CTTTCCTTTCC-ACCATTTTTGATAAA-TCAAAG
* * * **
3489338 TTTGTGC-CTCAAATGAGACAAGCATGGATTC
127 TTTGT-CTCTTAAATTAGACAAACATTAATTC
* ** *
3489369 T-AGT-GATGATCTTCATTTATTTT--GTGATTAGGC-ACTATAAACACATTCTCTTCATTAGGA
1 TCA-TACACAATCTCCATTT-TTTTCAG-GATTAGGCAAC-ATAAACACATTCT-TTCATTAGGA
* * * ** * ** * * *
3489429 TAAATGATATTGAAGATTTTTTTTTTTGCATGGAAATCTTTTCTTTCC-CCTACTTTCCTT-A-A
61 TACATGATATTGATG--CTTTGGTGTCACA-AGAAAGCTTTCCTTTCCACC-A-TTT--TTGATA
** * * * * **
3489491 AATCAAAGTTCATCCCTTAAATAACACAAGCATCGATTC
119 AATCAAAGTTTGTCTCTTAAATTAGACAAACATTAATTC
* ** * * * * *
3489530 TCATA-ACAGTCTCCATTCCTTTCAAGATT-GGGAAGCCA-AAACACATTCTCTTCATAAGCATT
1 TCATACACAATCTCCATTTTTTTCAGGATTAGGCAA--CATAAACACATTCT-TTCATTAGGATA
** ** * * * *
3489592 CATGCCATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCTATCGTTTTTGATAGAATCAAA
63 CATGATATTGATGCTTTGGTGTCACAAG-AAAGCTTTCCTTTCCACCATTTTTGATA-AATCAAA
* * * * *
3489657 GTTTATCTCTTATATAAGAAAAACATTAATAC
126 GTTTGTCTCTTAAATTAGACAAACATTAATTC
* * * ** * * *
3489689 TCATACA-AATCCCCCTTCTTTTCTTGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACA
1 TCATACACAATCTCCATTTTTTTCAGGATTAGGCAACATAAACACATTCTT-TCATTAGGATACA
* * * * * * *
3489753 CGATATTGATGTTTTGGT-TCTGCAAGAAACGCATT--TTCCCACCAAATTTTG-TAAAGTCTAA
65 TGATATTGATGCTTTGGTGTC-ACAAGAAA-GCTTTCCTTTCCACC-ATTTTTGATAAA-TCAAA
* * **
3489814 GTTTGTGC-CTCAAATGAGACAAACATGGATTC
126 GTTTGT-CTCTTAAATTAGACAAACATTAATTC
* ** * * *
3489846 T-AGT-GATGATCTTCATTATTTTT--TGATTAGGC-ACTATAAACACATTCTCCTCATTAGGAT
1 TCA-TACACAATCTCCATT-TTTTTCAGGATTAGGCAAC-ATAAACACATTCT-TTCATTAGGAT
* * ** * ** ** * * ** *
3489906 AAATGATATTGATGATTTTCTTTTGCGTTGAAATCTTTTCTTTGCC-TTATTTTCCTTA-AAATC
62 ACATGATATTGATGCTTTGGTGTCAC-AAGAAAGCTTTCCTTT-CCACCATTTT--TGATAAATC
* ** * * * **
3489969 ACAGTTCATCCCTTAAATAAGACAACCATCGATTC
123 AAAGTTTGTCTCTTAAATTAGACAAACATTAATTC
* * ** * * *
3490004 TCGTA-ACAGTCTCCATTCCTTTCAAGACT-GGGAAGCCA-AAACACATTCTCTTCATTAGGATA
1 TCATACACAATCTCCATTTTTTTCAGGATTAGGCAA--CATAAACACATTCT-TTCATTAGGATA
* * * * *
3490066 CATGGA-ATTGATGCTTTGGTGTCGCAAAAAAAGCTTTTCTTTCCTCCGTTTTTGATAGAATCAA
63 CAT-GATATTGATGCTTTGGTGTCAC-AAGAAAGCTTTCCTTTCCACCATTTTTGATA-AATCAA
* ** * * *
3490130 AGTTTGTGTCTTCTATAAGACAAACATGAATAC
125 AGTTTGTCTCTTAAATTAGACAAACATTAATTC
* * * ** * * * *
3490163 GCATACA-AATCCCCATTCTTTTCTTGATTAGGCACCATAAACATAGTCTTCTCATTAGGACACA
1 TCATACACAATCTCCATTTTTTTCAGGATTAGGCAACATAAACACATTCTT-TCATTAGGATACA
* ** ** * *
3490227 TTATATTGATGCTTTGGAT-TTGCAAGAAATG-TTTTTTTTCCCACCAATTTTTG-TAAGGTCTA
65 TGATATTGATGCTTTGG-TGTCACAAGAAA-GCTTTCCTTT-CCACC-ATTTTTGATAA-ATCAA
* * **
3490289 AGTTTGTGC-CTCAAATGAGACAAACATGGATTC
125 AGTTTGT-CTCTTAAATTAGACAAACATTAATTC
* ** * * * * * *
3490322 T-AGTGA-TCAA-CTTGATTCATTTT--GTGATTAGGC-ACTAGAAAGACATTGTCCTCAATAGG
1 TCA-T-ACACAATCTCCATT-TTTTTCAG-GATTAGGCAAC-ATAAACACATTCT-TTCATTAGG
* * ** * ** * * * *
3490381 ATAAAATGATATTGATGATTTTTTTTTTTGCATGGAAATCTTTTCTTTCC-CCTATTTTCCTTA-
60 AT-ACATGATATTGATG--CTTTGGTGTCACA-AGAAAGCTTTCCTTTCCACC-ATTTT--TGAT
** * * *** **
3490444 AAATCAAAGTTCATCCCTTAAATAAGACAAGTGTCGATTC
118 AAATCAAAGTTTGTCTCTTAAATTAGACAAACATTAATTC
* * * * * *
3490484 TCGTA-ACAGTCTCCATTCCTTTT-AAGACT-GGGAAGCCA-AAACACATTCTCTTCATTAGGAT
1 TCATACACAATCTCCATT-TTTTTCAGGATTAGGCAA--CATAAACACATTCT-TTCATTAGGAT
* * *
3490545 ACATCG-CATTGATGCTTTGGTGTCACAACAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCA
62 ACAT-GATATTGATGCTTTGGTGTCACAA-GAAAGCTTTCCTTTCCACCATTTTTGATA-AATCA
* * * *
3490609 AAGTTTGTCTCTTATATAAGACAAACATGAATAC
124 AAGTTTGTCTCTTAAATTAGACAAACATTAATTC
* * * * * *
3490643 TCATAGA-AATCTCCATTCTTTTCTTGG-TTAGGCACCATAAATATAGTCTTCTTTC--TAGGAT
1 TCATACACAATCTCCATTTTTTTC-AGGATTAGGCAACATAAACACA---TTCTTTCATTAGGAT
* * ** ** *
3490704 ACATGATATTGATGTTTTTCTTGGTTTTGCTGGAAAGGCATTTTCC-TACCA-CA-TTTTG-TAA
62 ACATGATATTGATG---CT-TTGGTGTCACAAGAAA-GC--TTTCCTTTCCACCATTTTTGATAA
* * *
3490765 AGTCTAAGTTTATGC-CTTAAATGT-GACAAAC-TTGGATTC
120 A-TCAAAGTTTGT-CTCTTAAAT-TAGACAAACATT-AATTC
* ** * ** * ** * * * *
3490804 T-AGT-GATGATATTAATTCATTTT--GTGATTAGGCTCCAGAAACACATTCTCCTCAATAAGAT
1 TCA-TACACAATCTCCATT-TTTTTCAG-GATTAGGCAACATAAACACATTCT-TTCATTAGGAT
* * ** * * * * * *
3490865 AAATGATATTGATGATTTTCTTTCGCATGGAAATCTTT-TTTTCGC-CCTATTTTCCTTA-AAAT
62 ACATGATATTGATGCTTTGGTGTCACA-AGAAAGCTTTCCTTTC-CACC-ATTTT--TGATAAAT
** ** * *** *
3490927 CAAAGTTCATC-CTTAAAAAATACCTGCATCAATTC
122 CAAAGTTTGTCTCTTAAATTAGACAAACATTAATTC
* * * ** ** * * * *
3490962 TCGTA-ACAGTCTCCGTTCCTTTCTTGATT-GGGAAGCCA-AATCAAATTCGCTTCATTAGGATA
1 TCATACACAATCTCCATTTTTTTCAGGATTAGGCAA--CATAAACACATTC-TTTCATTAGGATA
* ** * * *
3491024 TATGGCATTGATGCTTTTGTGTCGCAAGAAAAGCTTTTCCTTTCCATCATTTTTGATAGAATCAA
63 CATGATATTGATGCTTTGGTGTCACAAG-AAAGC-TTTCCTTTCCACCATTTTTGATA-AATCAA
* * * * * *
3491089 AATTTGCCTCTTATATAAGACAAACATGAATAC
125 AGTTTGTCTCTTAAATTAGACAAACATTAATTC
* * * ** * * ** *
3491122 TCATATA-AATCCCCATTCTTTTCTTGATTAGGCACCATAAA-ATAGCCTTCTGATTAGGAT--A
1 TCATACACAATCTCCATTTTTTTCAGGATTAGGCAACATAAACACATTCTT-TCATTAGGATACA
* * * * * * *
3491183 -GGT-TTTA-G--TT-ATG---CAAGAAGGGCATT--TTCCCACCAATTTTTG-TAAAGTCTAAG
65 TGATATTGATGCTTTGGTGTCACAAGAA-AGCTTTCCTTTCCACC-ATTTTTGATAAA-TCAAAG
* *
3491236 TTTGTGC-CTCAAATGAGACAAACA-TAGATTC
127 TTTGT-CTCTTAAATTAGACAAACATTA-ATTC
* ** * * * *
3491267 T-AGT-GATGATATTCATTTATTTT--GTGATTAGGC-ACGATAAACACATTCTCATCTTTAGGA
1 TCA-TACACAATCTCCATTT-TTTTCAG-GATTAGGCAAC-ATAAACACATTCT-TTCATTAGGA
* * * ** * * * * * ** *
3491327 TAAATGGTATTGATGATTTTCTTTTACATCGAAATCTTTTCTTTGCC-TTATTTTCCTTA-AAAT
61 TACATGATATTGATGCTTTGGTGTCACA-AGAAAGCTTTCCTTT-CCACCATTTT--TGATAAAT
* * ** **
3491390 CAAAGTTCT-TCCCTTAAATAAGACACGCATCGATTC
122 CAAAGTT-TGTCTCTTAAATTAGACAAACATTAATTC
* ** * * * * * *
3491426 TCATA-ACAGTCTCCATTCCTTTCAAGA-T-GGGAAGCCA-AAACATATTCCCTTCGTTAGGATC
1 TCATACACAATCTCCATTTTTTTCAGGATTAGGCAA--CATAAACACATT-CTTTCATTAGGATA
* * * *
3491487 CATTG-CATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAA
63 CA-TGATATTGATGCTTTGGTGTCACAAG-AAAGCTTTCCTTTCCACCATTTTTGATA-AATCAA
* *
3491551 AGTTTGTCTCTTATATAAGACAAACATT-A--C
125 AGTTTGTCTCTTAAATTAGACAAACATTAATTC
* * * * * * * * *
3491581 TAATGCA-AATCCCCATTTGTTTCAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAA
1 TCATACACAATCTCCATTTTTTTCAGGATTAGGCAACATAAACACATTCTT-TCATTAGGATACA
** * * * * *
3491645 CCATATTGATGCTTTTGTTTCGCAAGAAAGGC-TT-CTTTCCCACCAATTATTG-TAAAGTCTAA
65 TGATATTGATGCTTTGGTGTCACAAGAAA-GCTTTCCTTT-CCACC-ATTTTTGATAAA-TCAAA
* * * *
3491707 GTTTGTGC-CTCATATGAGACAAACATTGATTC
126 GTTTGT-CTCTTAAATTAGACAAACATTAATTC
* ** * * * *
3491739 T-AGT-GATGATCTTCATTCATTTT--GTGATTTAGGC-ACTATAAACACATTCCCTTCATCAGG
1 TCA-TACACAATCTCCATT-TTTTTCAG-GA-TTAGGCAAC-ATAAACACATT-CTTTCATTAGG
* * ** * ** * * **
3491799 ATAAATGATATTGATGATTTTTTTTGCA-TGGAAAACTTTTCTTTGCC-GTATTTTCTTGA-AAA
60 ATACATGATATTGATGCTTTGGTGT-CACAAGAAAGCTTTCCTTT-CCACCA-TTT-TTGATAAA
** * * * * * *
3491861 TCAAAGTTCATCCCTTAAATAAGATAAGCATCAATTT
121 TCAAAGTTTGTCTCTTAAATTAGACAAACATTAATTC
* * ** * * * *
3491898 TCGTA-ACAGTCTCCATTCCTTTCAAGACTAGG-AAGCCA-AAACACATTCTCTTCACTAGAATA
1 TCATACACAATCTCCATTTTTTTCAGGATTAGGCAA--CATAAACACATTCT-TTCATTAGGATA
** * * ***
3491960 CATGGCATTGATGCTTTGGTGTCACAAAAAAAGCTTTTCTTTCCTTTATTTTTGATAGAATCAAA
63 CATGATATTGATGCTTTGGTGTCAC-AAGAAAGCTTTCCTTTCCACCATTTTTGATA-AATCAAA
* * * * *
3492025 GTGTGTCTCTTATATAAGACAAACATGAATAC
126 GTTTGTCTCTTAAATTAGACAAACATTAATTC
* * * ** * * *
3492057 GCATACA-AATCCCCATTCTTTTCTTGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACA
1 TCATACACAATCTCCATTTTTTTCAGGATTAGGCAACATAAACACATTCTT-TCATTAGGATACA
* ** * *
3492121 TTATATTGATGCTTTGGAT-TTGCAAGAAATGCTTT--TTTCCCACCAATTTTTG-TAAGGTCTA
65 TGATATTGATGCTTTGG-TGTCACAAGAAA-GCTTTCCTTT-CCACC-ATTTTTGATAA-ATCAA
* * **
3492182 AGTTTATGC-CTTAAATGAGACAAACATGGATTC
125 AGTTTGT-CTCTTAAATTAGACAAACATTAATTC
** ** * * * * *
3492215 T-AGTGA-TGAA-CTTGATTCATTTT--GTGATTAGGC-ACTAGAAAGACATTCTCCTCAATAGG
1 TCA-T-ACACAATCTCCATT-TTTTTCAG-GATTAGGCAAC-ATAAACACATTCT-TTCATTAGG
* * * ** * * * * *
3492274 ATAAATGATATTGACGATTTTCTTTTC-CATGGAAATCTTAT-CTTTGCC-CTATTTTCTTA-AA
60 ATACATGATATTGATG-CTTTGGTGTCACA-AGAAAGCTT-TCCTTT-CCACCATTTT-TGATAA
* ** * * ** *
3492335 ATCAAAATTCATCCCTTAAATAAGACAGGCATCAATTC
120 ATCAAAGTTTGTCTCTTAAATTAGACAAACATTAATTC
* * ** * * *
3492373 TCGTA-ACAGTCTCCATTCCTTTCAAGATTAGG-AAGCCA-AAACCCATTTCCTTCATTAGGATA
1 TCATACACAATCTCCATTTTTTTCAGGATTAGGCAA--CATAAACACA-TTCTTTCATTAGGATA
* * * ** **** *
3492435 CAAGGCT-CTGATGCTTTGGTGTCGTAAGAAAGCTTTCCTTTTTGTCATTTTTTATAGAATCAAA
63 C-ATGATATTGATGCTTTGGTGTCACAAGAAAGCTTTCCTTTCCACCATTTTTGATA-AATCAAA
* * * *
3492499 GTTTTTCTCCTATATTAGACAAACATTAATAC
126 GTTTGTCTCTTAAATTAGACAAACATTAATTC
* * ** * *
3492531 TCATGCA-AATCCCCA-TTTTTTCAGGAGCAGGCAACATAAACATATTCTCGTCATTAGGATACA
1 TCATACACAATCTCCATTTTTTTCAGGATTAGGCAACATAAACACATTCT-TTCATTAGGATACA
* * * * * *
3492594 CGATATTTATGCTTTGGT-TTAGCAAAAAAGGCTTT-CTTCCCACCAATTTTTG-TAAAGTCTAA
65 TGATATTGATGCTTTGGTGTCA-CAAGAAA-GCTTTCCTTTCCACC-ATTTTTGATAAA-TCAAA
* * * * **
3492656 GTTTGTGTCTCAAATGAGAAAAACATGGATTC
126 GTTTGTCTCTTAAATTAGACAAACATTAATTC
* ** * * *
3492688 -C-TATGATGATC-CTCATTCATTTTT--TGATTAGGC-ACTATAAACACAATCTCTTGATTAGG
1 TCATA-CACAATCTC-CATT--TTTTTCAGGATTAGGCAAC-ATAAACACATTCT-TTCATTAGG
* * ** * ** * * * *
3492747 ATAAATGATATTGATGATTTTTTTTTTTGCATGGAAATCTTTTCTTTCC-CCTATTTTCCTTA-A
60 ATACATGATATTGATG--CTTTGGTGTCACA-AGAAAGCTTTCCTTTCCACC-ATTTT--TGATA
** * * *** **
3492810 AATCAAAGTTCATCCCTTAAATAAGACAAGTGTCGATTC
119 AATCAAAGTTTGTCTCTTAAATTAGACAAACATTAATTC
* * * * * *
3492849 TCGTA-ACAGTCTCCATTCCTTTT-AAGACT-GGGAAGCCA-AAACACATTCTCTTCATTAGGAT
1 TCATACACAATCTCCATT-TTTTTCAGGATTAGGCAA--CATAAACACATTCT-TTCATTAGGAT
* * * *
3492910 ACATCG-CATTGATGCATTGGTGTCACAACAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCA
62 ACAT-GATATTGATGCTTTGGTGTCACAA-GAAAGCTTTCCTTTCCACCATTTTTGATA-AATCA
* * ** * * *
3492974 AAGTTTGTCTATTATAGAAGACAAATATGAATAC
124 AAGTTTGTCTCTTAAATTAGACAAACATTAATTC
* * * * * * **
3493008 TCAAAGA-AATCTCCATTCTTTCCTC-GG-TTACGCACCATAAAC-CTAGTCTTCTTTTTAGGAT
1 TCATACACAATCTCCATT-TTT-TTCAGGATTAGGCAACATAAACAC-ATTCTT-TCATTAGGAT
* * *** * * * *
3493069 ACATGATATTGATGTTTTGGTTTTGTAGGAAAGGCATT--TTCCCACCAATTTTTG-TAAAGTCT
62 ACATGATATTGATGCTTTGGTGTCACAAGAAA-GCTTTCCTTTCCACC-ATTTTTGATAAA-TCA
* * * *
3493131 AAGCTTGTGC-CTCAAAAGT-GACAAAC-TTGGATTC
124 AAGTTTGT-CTCT-TAAATTAGACAAACATT-AATTC
* ** ** * ** * * *
3493165 T-AGT-GATGATCTTAATTCATTTT--GTGATTAGGCTCCAGAAACACATTCTCCTCAATAGGAT
1 TCA-TACACAATCTCCATT-TTTTTCAG-GATTAGGCAACATAAACACATTCT-TTCATTAGGAT
* * ** * * * * * * * *
3493226 AAATGATATTGATGATTTTCTTTCGCATGGAAATCTTTTTCTTGCC-CTATTTTCCTTA-AAATC
62 ACATGATATTGATGCTTTGGTGTCACA-AGAAAGC-TTTCCTTTCCACCATTTT--TGATAAATC
* ** * * * * *** ** *
3493289 AAAGGTCATCCCATAAATAAGTCCCGCATCGACTC
123 AAAGTTTGTCTCTTAAATTAGACAAACATTAATTC
* * ** * * * * *
3493324 TCGTA-ACAGTCTCCATTCCTTTCATGATT-GGGAAGCCA-AATCAAATTCCCTTCATTAGGATA
1 TCATACACAATCTCCATTTTTTTCAGGATTAGGCAA--CATAAACACATT-CTTTCATTAGGATA
* * * *
3493386 CATGGA-ATTGATGCTTTGGTGTCGCAAGAAAAGATTTCCTTTCGATCATTTTTGATAGAATCAA
63 CAT-GATATTGATGCTTTGGTGTCACAAG-AAAGCTTTCCTTTCCACCATTTTTGATA-AATCAA
* * * * *
3493450 AGTTTGCCTCTTATATAAGACAAACATGAATAC
125 AGTTTGTCTCTTAAATTAGACAAACATTAATTC
* * * * * * *
3493483 TCATACA-AATCCCCATTTTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAA
1 TCATACACAATCTCCATTTTTTTCAGGATTAGGCAACATAAACACATTCTT-TCATTAGGATACA
** * * * * * *
3493547 CCATATTGATGCTTTTGTTTCGCAAGAAAGGCTTT--TTTCCCACCAATTATTG-TAAAGTCTAT
65 TGATATTGATGCTTTGGTGTCACAAGAAA-GCTTTCCTTT-CCACC-ATTTTTGATAAA-TCAAA
* * * *
3493609 GTTTG-CGTCTCAAATGATACAAACATTGATTC
126 GTTTGTC-TCTTAAATTAGACAAACATTAATTC
* ** * * *
3493641 T-AGT-GATGATCTTCATTCATTTT--GTGATTAGGC-ACTATAAACACATTCCCTTCATTAGGA
1 TCA-TACACAATCTCCATT-TTTTTCAG-GATTAGGCAAC-ATAAACACATT-CTTTCATTAGGA
* * ** * ** * * * * *
3493701 TAAATGATATTGATGATTTTTTTTTTGCATGGAAATG-TTTTCTTTGCC-CTATTTTCTTAAAAA
61 TACATGATATTGATG-CTTTGGTGTCACA-AGAAA-GCTTTCCTTT-CCACCATTTT-TGATAAA
** * * ** *
3493764 TCAAAGTTCATCCCTTAAATAAGACAAGTATTGATTC
121 TCAAAGTTTGTCTCTTAAATTAGACAAACATTAATTC
* * ** * * *
3493801 TCGTA-ACAGTCTCCATTCCTTTCAAGACT-GGGAAGCCA-AAACACATTCTCTTCATTAGGATA
1 TCATACACAATCTCCATTTTTTTCAGGATTAGGCAA--CATAAACACATTCT-TTCATTAGGATA
** * * * * **
3493863 CATGGCATTGATGCTTTGGTGTCGCAAAAAAAGCTTTTCTTTCCTCTGTTTTTGATAGAATCAAA
63 CATGATATTGATGCTTTGGTGTCAC-AAGAAAGCTTTCCTTTCCACCATTTTTGATA-AATCAAA
* * * *
3493928 GTTTGTCTCTTATATAAGACAAACATGAATAC
126 GTTTGTCTCTTAAATTAGACAAACATTAATTC
* *** * * * *
3493960 GCATACA-AATC-CCATTCTTTTTGTTGATTAGGCACCATAAACATAGTCTTCTCATTAGCATAC
1 TCATACACAATCTCCATT-TTTTTCAGGATTAGGCAACATAAACACATTCTT-TCATTAGGATAC
* * *
3494023 ATTATATTGATGCTTTGGATTTGC-C-AGAAATGCTTT--TTTCCCACCAATTTTTG-TAAGGTC
64 ATGATATTGATGCTTTGG-TGT-CACAAGAAA-GCTTTCCTTT-CCACC-ATTTTTGATAA-ATC
* ** * * **
3494083 TAAGTTTGTGGCTCAAATGAGACAAACATGGATT-
123 AAAGTTTGTCTCTTAAATTAGACAAACATTAATTC
* *** * * * * *
3494117 T--TAGCGATGAA-CTTGGTTCATTTT--GTGATTAGGC-ACTAGAAAGACATTCTCCTCAATAG
1 TCATA-C-A-CAATCTCCATT-TTTTTCAG-GATTAGGCAAC-ATAAACACATTCT-TTCATTAG
* * ** * ** * * * **
3494176 GATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTAT-CTTTGCC-CTATTTTTCTTAAA
59 GATACATGATATTGATGCTTTGGTGTCACA-AGAAAGCTT-TCCTTT-CCACCATTTTTGAT-AA
* ** * * * * **
3494239 ATCAAAATTCATCCCTTGAATAAGACAGACATCGATTC
120 ATCAAAGTTTGTCTCTTAAATTAGACAAACATTAATTC
* * ** * * * * *
3494277 TCGTA-ACAGTCTCCATTCCTTTCAAGACT-GGGAAGCCA-AAACACTTTCCTTTTATTAGGATA
1 TCATACACAATCTCCATTTTTTTCAGGATTAGGCAA--CATAAACACATT-CTTTCATTAGGATA
** * * * * *
3494339 CATGGCATAGACGCTTTGGTGTCACAAGAAACGCTTTTCTTTACACCGTTTTTGATAGAATCAAA
63 CATGATATTGATGCTTTGGTGTCACAAGAAA-GCTTTCCTTTCCACCATTTTTGATA-AATCAAA
* * * *
3494404 GTTTATGTCTTATATTAGACAAACATTAATAC
126 GTTTGTCTCTTAAATTAGACAAACATTAATTC
* * *
3494436 TCATACA-AATCCCCATTTTTTT-GGGATTAGGCAACATAAACATATTCTTGTCATTAGGATACA
1 TCATACACAATCTCCATTTTTTTCAGGATTAGGCAACATAAACACATTCTT-TCATTAGGATACA
* * ** *
3494499 TGATATTGATGCTTT-GTTTCGCAAGAAAGGCTTT-CTTTTAACCAATTTTTG-TAAAGTCTAAG
65 TGATATTGATGCTTTGGTGTCACAAGAAA-GCTTTCCTTTCCACC-ATTTTTGATAAA-TCAAAG
* * * ***
3494561 TTTATGC-CTCAAATAAGACAAACAAGGATTC
127 TTTGT-CTCTTAAATTAGACAAACATTAATTC
* ** * * *
3494592 T-AGT-GATGATCTTCATTCATTTT--GTGATTAGGC-ACTATAAACACATTCCCTTCATTAGGA
1 TCA-TACACAATCTCCATT-TTTTTCAG-GATTAGGCAAC-ATAAACACATT-CTTTCATTAGGA
* * ** * ** * *
3494652 TAAATGATATTGAAGACTTTTTTTTTTGCATAGAAATCTTTTCTTTGCC-CCATTTTCTTGA-AA
61 TACATGATATTGATG-C-TTTGGTGTCACA-AGAAAGCTTTCCTTT-CCACCA-TTT-TTGATAA
* * ** **
3494715 GTCAAAGTTCATG-C-CTTAAATAAGACAGCCATCGATTC
120 ATCAAAGTT--TGTCTCTTAAATTAGACAAACATTAATTC
* ** ** * * **
3494753 TCGTA-ACGGTCTCCATTCCGTTTAAGG-CTAGG-AAGCCGAAACACATTCTCTTCATTAGGATA
1 TCATACACAATCTCCATT-TTTTTCAGGATTAGGCAA-CATAAACACATTCT-TTCATTAGGATA
* * * *
3494815 CATTG-CATTGATGCTTTGCTGTCACAACAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAA
63 CA-TGATATTGATGCTTTGGTGTCACAA-GAAAGCTTTCCTTTCCACCATTTTTGATA-AATCAA
* * * **
3494879 AGTTTGTCTCTTATATAAGACAAACATGAATAG
125 AGTTTGTCTCTTAAATTAGACAAACATTAATTC
* * * * ** * **
3494912 TCATAGA-AATCTCCATTCTTTTCTTGG-TTAGGCAGCATAAACTTAGTCTTCTTTTTAGGATAC
1 TCATACACAATCTCCATTTTTTTC-AGGATTAGGCAACATAAACACATTCTT-TCATTAGGATAC
* * * * ** * *
3494975 ATGATAATAATGTTTTGGTTTTGCAAGAAAGGTATT--TTCCCACCAATTTTTG-TAAAGT-ATA
64 ATGATATTGATGCTTTGGTGTCACAAGAAAGCT-TTCCTTTCCACC-ATTTTTGATAAA-TCA-A
* *
3495036 AGTTTGTGC-CTCAAATGT-GACAAAC-TTGGATTC
125 AGTTTGT-CTCTTAAAT-TAGACAAACATT-AATTC
* ** ** * ** * *
3495069 T-AGT-GATGATCTTAATTCATTTT--GTGATTAGGCTCCAGAAACACATT-TTCCTCAATAGGA
1 TCA-TACACAATCTCCATT-TTTTTCAG-GATTAGGCAACATAAACACATTCTT--TCATTAGGA
* * * ** * * * * *
3495129 TAAATGATATTGACGATTTTATTTCACATGGAAATCTTTCCTTTGCC-CAATTTTCCTTA-AAAT
61 TACATGATATTGATGCTTTGGTGTCACA-AGAAAGCTTTCCTTT-CCACCATTTT--TGATAAAT
* * * *** **
3495192 CAAAGTTCT-TCCCCTAAATAAGACCCGCATCGATTC
122 CAAAGTT-TGTCTCTTAAATTAGACAAACATTAATTC
** * * * * * * * * * *
3495228 TTGTA-ATAGTCTCCGTTTCTTTCATGACT-GGGAAGCCA-AATCAAATTCCCTTCATTAGGATA
1 TCATACACAATCTCCATTTTTTTCAGGATTAGGCAA--CATAAACACATT-CTTTCATTAGGATA
** * * *
3495290 CATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTCCTTTCGATCATTTTTGATAGAATCAAA
63 CATGATATTGATGCTTTGGTGTCACAAG-AAAGCTTTCCTTTCCACCATTTTTGATA-AATCAAA
* * *
3495355 GTTTGCCTCTTATA-TACGACAAACATTAATAC
126 GTTTGTCTCTTAAATTA-GACAAACATTAATTC
* * ** * * ** * *
3495387 TCATACA-AATCCCCATTCTTTTCTTGATTAGGCACCATAAACATAGCCTTCTGATTAGGATAGA
1 TCATACACAATCTCCATTTTTTTCAGGATTAGGCAACATAAACACATTCTT-TCATTAGGATACA
* * * * * * * *
3495451 CGATATTGACGTTTTAGT-T-ATGCAAGAAAGGCATT--TTCCCACCAATTTTTG-TAAAGCCTA
65 TGATATTGATGCTTTGGTGTCA--CAAGAAA-GCTTTCCTTTCCACC-ATTTTTGATAAA-TCAA
** *
3495511 AGTTTGTGC-CACAAATGAGACAAACA-TATATTC
125 AGTTTGT-CTCTTAAATTAGACAAACATTA-ATTC
* ** * * * *
3495544 T-AGT-GATGATCTTCATTCATTTT--GTGATTA-GC-ACTATAAACACATTCTCCTCTTTAGGA
1 TCA-TACACAATCTCCATT-TTTTTCAG-GATTAGGCAAC-ATAAACACATTCT-TTCATTAGGA
* * * * ** * * * * * **
3495603 TAAATGGTATTAATGATTTTCTTTTACATGGAAATCCTTT-CTTTGCC-CTATTTTTCTTAAAAT
61 TACATGATATTGATGCTTTGGTGTCACA-AGAAA-GCTTTCCTTT-CCACCATTTTTGAT-AAAT
* * * ** **
3495666 CAAAGTTCT-TCCCGTAAATAAGACACGCATCGATTC
122 CAAAGTT-TGTCTCTTAAATTAGACAAACATTAATTC
** * *
3495702 TCATA-ACAATCTCCATTCCTTTC-GAGACT-GGGAAGCCA-AAACACATTCTCTTCATTAGGAT
1 TCATACACAATCTCCATTTTTTTCAG-GATTAGGCAA--CATAAACACATTCT-TTCATTAGGAT
** * * * * * **
3495763 ACATGGCATTGATGCTTTGGTGTCGCAAAAAAAGTTTTTCTTTCCTCTGTTTTTGATAGAATCAA
62 ACATGATATTGATGCTTTGGTGTCAC-AAGAAAGCTTTCCTTTCCACCATTTTTGATA-AATCAA
* * * *
3495828 AGTTTGTCTCTTATATAAGACAAACATGAATAC
125 AGTTTGTCTCTTAAATTAGACAAACATTAATTC
* *** * * * *
3495861 GCATACA-AATC-CCATTCTTTTTGTTGATTAGGCACCATAAACATAGTCTTCTCATTAGCATAC
1 TCATACACAATCTCCATT-TTTTTCAGGATTAGGCAACATAAACACATTCTT-TCATTAGGATAC
* * *
3495924 ATTATATTGATGCTTTGGATTTGC-C-AGAAATGCTTT--TTTCCCACCAATTTTTG-TAAGGTC
64 ATGATATTGATGCTTTGG-TGT-CACAAGAAA-GCTTTCCTTT-CCACC-ATTTTTGATAA-ATC
* ** * * **
3495984 TAAGTTTGTGGCTCAAATGAGACAAACATGGATT-
123 AAAGTTTGTCTCTTAAATTAGACAAACATTAATTC
* *** * * * * *
3496018 T--TAGCGATGAA-CTTGGTTCATTTT--GTGATTAGGC-ACTAGAAAGACATTCTCCTCAATAG
1 TCATA-C-A-CAATCTCCATT-TTTTTCAG-GATTAGGCAAC-ATAAACACATTCT-TTCATTAG
* * ** * ** * * * **
3496077 GATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTAT-CTTTGCC-CTATTTTTCTTAAA
59 GATACATGATATTGATGCTTTGGTGTCACA-AGAAAGCTT-TCCTTT-CCACCATTTTTGAT-AA
* ** * * * * **
3496140 ATCAAAATTCATCCCTTGAATAAGACAGACATCGATTC
120 ATCAAAGTTTGTCTCTTAAATTAGACAAACATTAATTC
* * ** * * * * *
3496178 TCGTA-ACAGTCTCCATTCCTTTCAAGACT-GGGAAGCCA-AAACACTTTCCTTTTATTAGGATA
1 TCATACACAATCTCCATTTTTTTCAGGATTAGGCAA--CATAAACACATT-CTTTCATTAGGATA
** * * * * *
3496240 CATGGCATAGACGCTTTGGTGTCACAAGAAACGCTTTTCTTTACACCGTTTTTGATAGAATCAAA
63 CATGATATTGATGCTTTGGTGTCACAAGAAA-GCTTTCCTTTCCACCATTTTTGATA-AATCAAA
* * *
3496305 GTTTATCTCTTATATTAGACAAACATTAATAC
126 GTTTGTCTCTTAAATTAGACAAACATTAATTC
* * *
3496337 TCATACA-AATCCCCATTTTTTT-GGGATTAGGCAACATAAACATATTCTTGTCATTAGGATACA
1 TCATACACAATCTCCATTTTTTTCAGGATTAGGCAACATAAACACATTCTT-TCATTAGGATACA
* * ** *
3496400 TGATATTGATGCTTT-GTTTCGCAAGAAAGGCTTT-CTTTTAACCAATTTTTG-TAAAGTCTAAG
65 TGATATTGATGCTTTGGTGTCACAAGAAA-GCTTTCCTTTCCACC-ATTTTTGATAAA-TCAAAG
* * *
3496462 TTTGTGC-CTCAAATGT-GGCAAAC-TTGGATTC
127 TTTGT-CTCTTAAAT-TAGACAAACATT-AATTC
* * ** * * *
3496493 T-AGAGATGATCTTCATTCATTTT--GTGATTAGGC-ACTATAAACACATTCCCTTCATTAGGAT
1 TCATACACAATCTCCATT-TTTTTCAG-GATTAGGCAAC-ATAAACACATT-CTTTCATTAGGAT
* * ** * ** * * * * *
3496554 AAATGATATTGATGATTTTTTTTTTGCATGGAAAACTTTTCTTTGCC-CTATTTTCCTTA-AAAT
62 ACATGATATTGATG-CTTTGGTGTCACA-AGAAAGCTTTCCTTT-CCACCATTTT--TGATAAAT
** * * * * **
3496617 CAAAGTTCATCCCTTAAATAAGACAAGCGTCGATTC
122 CAAAGTTTGTCTCTTAAATTAGACAAACATTAATTC
* * ** * * *
3496653 TCGTA-ACAGTCTCCATTCCTTTCAAGACT-GGGAAGCCA-AAACACATTCTCTTCATTAGGATA
1 TCATACACAATCTCCATTTTTTTCAGGATTAGGCAA--CATAAACACATTCT-TTCATTAGGATA
* * *
3496715 CATTG-CATTGATGCTTTGGTGTCACAACAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAA
63 CA-TGATATTGATGCTTTGGTGTCACAA-GAAAGCTTTCCTTTCCACCATTTTTGATA-AATCAA
* * * **
3496779 AGTTTGTCTCTTATATAAGACAAACATGAATAG
125 AGTTTGTCTCTTAAATTAGACAAACATTAATTC
* * * * ** * **
3496812 TCATAGA-AATCTCCATTCTTTTCTTGG-TTAGGCAGCATAAACTTAGTCTTCTTTTTAGGATAC
1 TCATACACAATCTCCATTTTTTTC-AGGATTAGGCAACATAAACACATTCTT-TCATTAGGATAC
* *
3496875 ATGATATTAATGTTTTGGT
64 ATGATATTGATGCTTTGGT
3496894 TTTGCAAGAA
Statistics
Matches: 6311, Mismatches: 1886, Indels: 1506
0.65 0.19 0.16
Matches are distributed among these distances:
144 6 0.00
145 54 0.01
146 24 0.00
147 4 0.00
148 7 0.00
149 3 0.00
150 3 0.00
151 3 0.00
152 2 0.00
153 2 0.00
154 8 0.00
155 91 0.01
156 350 0.06
157 872 0.14
158 1402 0.22
159 2290 0.36
160 601 0.10
161 425 0.07
162 120 0.02
163 35 0.01
164 5 0.00
165 4 0.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (157 bp):
TCATACACAATCTCCATTTTTTTCAGGATTAGGCAACATAAACACATTCTTTCATTAGGATACAT
GATATTGATGCTTTGGTGTCACAAGAAAGCTTTCCTTTCCACCATTTTTGATAAATCAAAGTTTG
TCTCTTAAATTAGACAAACATTAATTC
Found at i:3499345 original size:158 final size:157
Alignment explanation
Indices: 3497608--3506025 Score: 2334
Period size: 158 Copynumber: 53.2 Consensus size: 157
3497598 TGGGAAGCCA
* *** * * * *
3497608 AAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTATCGCAAGAAAAGCTTTTCCT
1 AAACACATTCCCTTCATTAGGATAAATCATATTGATGCTTTTGTTTCGCAAG-AAAGCTTTTCTT
* * * * *
3497673 TCCACC-ATTTTTGATAGAA-TCAAGGTTTGTCTCTTATATAAGACAAACATT-ACTACTAATGC
65 TCCACCAATTTTTG-TA-AAGTCAAAGTTTG-CCCTTAAATAAGACAAACATTGA-TTCTAGTG-
* * **
3497735 A-AATCCCCATTTTTTTTAG-GATTAGGCACCAT
125 ATGATCTCCATTCATTTT-GTGATTAGGCACCAT
* * * * * * * *
3497767 AGACATAAT-CTTCTCATTAGGAT--ACCACATTGATGCTTTTGTTTTGCAAGAAAGGCATTT-T
1 AAACACATTCCCT-TCATTAGGATAAATCATATTGATGCTTTTGTTTCGCAAGAAA-GCTTTTCT
* * * * * * * *
3497828 TCCCACCAATTATTGTAAAGTCTAAGTTCGCGCCTCAAATGAGACAAACATTGATTCAAGTGTTG
64 TTCCACCAATTTTTGTAAAGTCAAAGTTTGC-CCTTAAATAAGACAAACATTGATTCTAGTGATG
* *
3497893 ATCTTCATTCATTTTGTGATTAGGCACTAT
128 ATCTCCATTCATTTTGTGATTAGGCACCAT
* * * * * * * * *
3497923 AAACACATTCCCTTCATTAGGATAAATGATATTGACGATTTTTTTTTGCATGGAAATCATTTCAT
1 AAACACATTCCCTTCATTAGGATAAATCATATTGATGCTTTTGTTTCGCA-AGAAAGCTTTTCTT
* ** * * * * ** * *
3497988 TGC-CTTATTTTTCTGAAAATCAAAGTTCAT-CCCTTAAATAAGACAAGCATCGATTCTCTTAAC
65 TCCACCAATTTTTGT-AAAGTCAAAGTT--TGCCCTTAAATAAGACAAACATTGATTCTAGTGAT
* ** **** * * *
3498051 AATCTCCATTCCGTCCAAGACTAGGAAGCC-G
127 GATCTCCATTCATTTTGTGATTAGGCA-CCAT
* * ** * * * *
3498082 AAACACATTCTCTTCATTAGGATACATCGCATTGATGCTTTGGTGTCACAACAAAAGCTTTTCTT
1 AAACACATTCCCTTCATTAGGATAAATCATATTGATGCTTTTGTTTCGCAA-GAAAGCTTTTCTT
* * *
3498147 TCCACC-ATTTTTGATAGAA-TCAAAGTTTGTCTCTTATATAAGACAAACATT-ACTACTCAAG-
65 TCCACCAATTTTTG-TA-AAGTCAAAGTTTG-CCCTTAAATAAGACAAACATTGA-T--TCTAGT
* * * * *
3498208 CA-AATCCCCATT-TTTTTGGGATTAGGCACCAT
124 GATGATCTCCATTCATTTTGTGATTAGGCACCAT
** * * * *
3498240 -AA-ACATAGCCTTCTGATTTGGATAGA-CGATATTGACG-TTTTAGTTAT-GCAAGAAAGGTTT
1 AAACACATTCCCTTC--ATTAGGATAAATC-ATATTGATGCTTTT-GTT-TCGCAAGAAAGCTTT
* ** * *
3498300 T-TTTCCCACCAATTATTGTAAAGTCTTAGTTTATG-CCTCAAATGAGACAAACATTGATTCTAG
61 TCTTT-CCACCAATTTTTGTAAAGTCAAAG-TT-TGCCCTTAAATAAGACAAACATTGATTCTAG
* * * *
3498363 TGCTGATCTTCATTCATTCTGTGATTAGGCACTAT
123 TGATGATCTCCATTCATTTTGTGATTAGGCACCAT
* * * * * *
3498398 AAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGCATGGAAAACTTTTCTT
1 AAACACATTCCCTTCATTAGGATAAATCATATTGATGCTTTTGTTTCGCA-AGAAAGCTTTTCTT
* * * * * * *
3498463 TGC-CCTATTTTCCT-TAAAATCAAAGTTCAT-CCCTTAAATAAGACAAGCGTCGATTCTCGT-A
65 TCCACCAATTTT--TGTAAAGTCAAAGTT--TGCCCTTAAATAAGACAAACATTGATTCTAGTGA
** * *** * * *
3498524 ACAGTCTCCATTCCTTTCAAGACTGGGAAGCCA-
126 TGA-TCTCCATTCATTTTGTGATTAGGCA-CCAT
* * *** * * * *
3498557 AAACACATTCTCTTCATTAGGATACATTGCATTGATGCTTTGGTGTCACAACAAAAGCTTTTCTT
1 AAACACATTCCCTTCATTAGGATAAATCATATTGATGCTTTTGTTTCGCAA-GAAAGCTTTTCTT
* * * *
3498622 TCCACC-ATTTTTGATAGAA-TCAAAGTTTGTCTCTTATATAAGACAAACA-TGA--ATAGTCAT
65 TCCACCAATTTTTG-TA-AAGTCAAAGTTTG-CCCTTAAATAAGACAAACATTGATTCTAGTGAT
* *
3498682 AGAAATCTCCATTC-TTTTCTTGGTTAGGCACCAT
127 -G--ATCTCCATTCATTTT-GTGATTAGGCACCAT
* * * * * * * * *
3498716 AAAC-CTAGTCTTCTT-TTTAGGATACATGATATTGATG-TTTTGGTTTTGCAGGAAAGGTATT-
1 AAACAC-ATTC-CCTTCATTAGGATAAATCATATTGATGCTTTT-GTTTCGCAAGAAAGCTTTTC
* * * * * *
3498777 TTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATAGATTCTAGTGAT
63 TTTCCACCAATTTTTGTAAAGTCAAAGTTTG-CCCTTAAATAAGACAAACATTGATTCTAGTGAT
* * *
3498842 GATCTTCATTCATTTTGTGATTAAGCACTAT
127 GATCTCCATTCATTTTGTGATTAGGCACCAT
* ** * * * ** * *
3498873 AAACACATTCTCC-TCTTTAGGATAAATGGTATTGACGATTTTCTTTTACATGGAAATCTTTTCT
1 AAACACATTC-CCTTCATTAGGATAAATCATATTGATGCTTTTGTTTCGCA-AGAAAGCTTTTCT
* * * * ** * *
3498937 TTGC-CCTATTTTCCT-TAAAATCAAAAATCATT--CCTTAAATAAGACAGGCATCGATTCTCGT
64 TTCCACCAATTTT--TGTAAAGTC-AAAGT--TTGCCCTTAAATAAGACAAACATTGATTCTAGT
* *** * *
3498998 AAT-AGTCTCCATTTC-TTTCAAGATTGGGAAGCCA-
124 GATGA-TCTCCA-TTCATTTTGTGATTAGGCA-CCAT
* * *** * * * *
3499032 AAACACATTCCCTTCATCAGGATACATGGCATTGATACTTTGGTGTCGTAAGAAAAGCTTTTCTT
1 AAACACATTCCCTTCATTAGGATAAATCATATTGATGCTTTTGTTTCGCAAG-AAAGCTTTTCTT
* *
3499097 TCCACC-ATTTTTGATAGAA-TCAAAGTTTGCCTCTTATATAAGACAAACATT-ACTACTCA-TG
65 TCCACCAATTTTTG-TA-AAGTCAAAGTTTGCC-CTTAAATAAGACAAACATTGA-TTCT-AGTG
* **
3499158 CA-AATC-CGCATTTTTTTTAG-GATTAGGCACCAT
125 -ATGATCTC-CATTCATTTT-GTGATTAGGCACCAT
* * * * *
3499191 AGACATAAT-CTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAAGGCTTTT-T
1 AAACACATTCCCT-TCATTAGGATAAATCATATTGATGCTTTTGTTTCGCAAGAAA-GCTTTTCT
* * ** * * *
3499254 TCCCACCAATTATTGTAAAGTCTTAGTTTGCGTCTCAAATGAGACAAACATTGATTCTAGTGATG
64 TTCCACCAATTTTTGTAAAGTCAAAGTTTGC-CCTTAAATAAGACAAACATTGATTCTAGTGATG
* *
3499319 ATCTTCATTCATTTTGTGATTAGGCACTAT
128 ATCTCCATTCATTTTGTGATTAGGCACCAT
* * * * * *
3499349 AAACACATTCCCTTCATTAGGATAAATGATATTGACGATTTTTTTTCG-ATGGAAATCTTTTCTT
1 AAACACATTCCCTTCATTAGGATAAATCATATTGATGCTTTTGTTTCGCA-AGAAAGCTTTTCTT
* ** * * * * **
3499413 TGC-CTTATTTTCT-TGAAAATCAAAGTTCAT-CCCTTAAATAAGACAAGCATCGATTCTCGCAA
65 TCCACCAATTTT-TGT-AAAGTCAAAGTT--TGCCCTTAAATAAGACAAACATTGATTCTAGTGA
* *** * *
3499475 T-AGTCTCCATTCCTTTCAAGA-TGGGAAGCCA-
126 TGA-TCTCCATTCATTTTGTGATTAGGCA-CCAT
** *** * * *
3499506 AAACACATTCCCTTCATTAGGATACTTGGCATTGATGCTTTGGTGTCTCAAGAGAAGCTTTTCTT
1 AAACACATTCCCTTCATTAGGATAAATCATATTGATGCTTTTGTTTCGCAAGA-AAGCTTTTCTT
* * * * * * *
3499571 TTCACC-ATTTTTG-AAAGAATCAAAGTTTATCTCTTATATAAGACAAAGATTACAAATC-A-TG
65 TCCACCAATTTTTGTAAAG--TCAAAGTTT-GCCCTTAAATAAGACAAACATT--GATTCTAGTG
* * ** *
3499632 CA-AATCCCCATTTTTTTTAG-GATTTGGCACCAT
125 -ATGATCTCCATTCATTTT-GTGATTAGGCACCAT
* * * * *
3499665 AGACATAAT-CTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAAGGCTTTT-T
1 AAACACATTCCCT-TCATTAGGATAAATCATATTGATGCTTTTGTTTCGCAAGAAA-GCTTTTCT
* * * * ** ** *
3499728 TCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGTGGTAAAC-TTGGATTCTAGAGAT
64 TTCCACCAATTTTTGTAAAGTCAAAGTTTG-CCCTTAAATAAGACAAACATT-GATTCTAGTGAT
* *
3499792 GATCTTCATTCATTTTGTGATTAGGCACTAT
127 GATCTCCATTCATTTTGTGATTAGGCACCAT
* * * * * * * *
3499823 GAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGGATGGAAATCTTTTCTT
1 AAACACATTCCCTTCATTAGGATAAATCATATTGATGCTTTTGTTTCGCA-AGAAAGCTTTTCTT
* ** * * * * *
3499888 TGC-CTTATTTTCT-TGAAAATCAAAGTTCAT-CCCTTAAATAAGACAAGCATCGATTCTCG-CA
65 TCCACCAATTTT-TGT-AAAGTCAAAGTT--TGCCCTTAAATAAGACAAACATTGATTCTAGTGA
** * *** * *
3499949 ACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCA-
126 TGA-TCTCCATTCATTTTGTGATTAGGCA-CCAT
* * *
3499981 AAACACATTCCCTTCATTAGGATACATGGCA-A-TGATGC-TTTGGTGCTGCAAGAAAAGCTTTT
1 AAACACATTCCCTTCATTAGGATAAAT--CATATTGATGCTTTTGTTTC-GCAAG-AAAGCTTTT
* * *
3500043 CTTTCCACC-ATTTTTGATAGAA-TCAAAGTTTGTCTCTTATATAAGACAAACATT-ACTACTCA
62 CTTTCCACCAATTTTTG-TA-AAGTCAAAGTTTG-CCCTTAAATAAGACAAACATTGA-TTCT-A
* * **
3500105 -TGCA-AATCCCCATTTTTTTTAG-GATTAGGCACCAT
122 GTG-ATGATCTCCATTCATTTT-GTGATTAGGCACCAT
* * * * * *
3500140 AGACATAAT-CTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAGGAAAGGCTTTT-T
1 AAACACATTCCCT-TCATTAGGATAAATCATATTGATGCTTTTGTTTCGCAAGAAA-GCTTTTCT
* * * ** * *
3500203 TCCCACCAATTATTGCAAAGTCTTAGTTTGCACCTCAAATGAGACAAACATTGATTCTAGTGATG
64 TTCCACCAATTTTTGTAAAGTCAAAGTTTGC-CCTTAAATAAGACAAACATTGATTCTAGTGATG
* *
3500268 ATCTTCATTCATTTTGTGATTAGGCACTAT
128 ATCTCCATTCATTTTGTGATTAGGCACCAT
* * * * *
3500298 AAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTTTGCATAGAAATCTTTTC
1 AAACACATTCCCTTCATTAGGATAAATCATATTGATG--CTTTTGTTTCGCA-AGAAAGCTTTTC
* ** * * * *
3500363 TTTGC-CTTATTTTCT-TAAAAATCAAAGTTCAT-CCCTTAAATAAGACAAGCATCGATTCTCGT
63 TTTCCACCAATTTT-TGT-AAAGTCAAAGTT--TGCCCTTAAATAAGACAAACATTGATTCTAGT
* * *** * * *
3500425 AAT-AGTCTCCATTCCTTTCAAGACTGGGAAGCCA-
124 GATGA-TCTCCATTCATTTTGTGATTAGGCA-CCAT
* * * *** * * * *
3500459 AAACAGATTCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAAAAAAACTTTTCTT
1 AAACACATTCCCTTCATTAGGATAAATCATATTGATGCTTTTGTTTCGC-AAGAAAGCTTTTCTT
* ** ** * * *
3500524 TCC-TCTGTTTTTGATAGAA-TCAAAGTTTGTTTCTTATATAAGACAAACA-TGAATACGCA-T-
65 TCCACCAATTTTTG-TA-AAGTCAAAGTTTG-CCCTTAAATAAGACAAACATTG-ATTC-TAGTG
** * *
3500584 ACAAATCCCCATTC-TTTTCTTGATTAGGCACCAT
125 A-TGATCTCCATTCATTTT-GTGATTAGGCACCAT
* * * * * *
3500618 AAACATAGT-CTTCTCATTAGGATACATTATATTGATGCTTTGGATTT-GCAAGAAATGC-TTT-
1 AAACACATTCCCT-TCATTAGGATAAATCATATTGATGCTTTTG-TTTCGCAAGAAA-GCTTTTC
** * *
3500679 TTTCCTACCAATTTTTGTAAAGTCTTAGTTTGCGCCTCAAATGAGACAAACATTGATTC---T-A
63 TTTCC-ACCAATTTTTGTAAAGTCAAAGTTTGC-CCTTAAATAAGACAAACATTGATTCTAGTGA
*
3500740 -G-T-T-CATTCATTTTGTGATTAGGCACTAT
126 TGATCTCCATTCATTTTGTGATTAGGCACCAT
* * * *
3500768 AAACACATTCCCTTCATTAGGATAAATGATATTGATGAGTTTT-TTTTG-AATGGAAATCTTTTC
1 AAACACATTCCCTTCATTAGGATAAATCATATTGATG-CTTTTGTTTCGCAA--GAAAGCTTTTC
* ** * * * *
3500831 TTTGC-CTTATTTTCT-TGAAAATCAAAGTTCAT-CTCTTAAATAAGACAAGC-TTCGATTCTCG
63 TTTCCACCAATTTT-TGT-AAAGTCAAAGTT--TGCCCTTAAATAAGACAAACATT-GATTCTAG
* ** * * *** * *
3500892 -CAACAGTCTCTATTCCTTTCAAGA-TGGGAAGCCA-
123 TGATGA-TCTCCATTCATTTTGTGATTAGGCA-CCAT
* *** * * *
3500926 AAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCCAGAAAAGCTTTTCTT
1 AAACACATTCCCTTCATTAGGATAAATCATATTGATGCTTTTGTTTCGCAAG-AAAGCTTTTCTT
* * * * * **
3500991 TTCACC-ATTTTTGATAGAA-TCAAAGTTTGTCTCTTATATAAGACAAGCATT-ACTACTCCTGC
65 TCCACCAATTTTTG-TA-AAGTCAAAGTTTG-CCCTTAAATAAGACAAACATTGA-TTCTAGTG-
* * **
3501053 A-AATCCCCATTTTTTTTAG-GATTAGGCACCAT
125 ATGATCTCCATTCATTTT-GTGATTAGGCACCAT
* * * * * * * *
3501085 AGACATAAT-CGTCTCATTAGGATAAACCATATTGATGCTTTGGTTTCCCGAGAAATGCTTTT-T
1 AAACACATTCCCT-TCATTAGGATAAATCATATTGATGCTTTTGTTTCGCAAGAAA-GCTTTTCT
* * * * * * * * *
3501148 TCCCGCCAACTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAAAATTGATTCTAGAGATG
64 TTCCACCAATTTTTGTAAAGTCAAAGTTTGC-CCTTAAATAAGACAAACATTGATTCTAGTGATG
* *
3501213 ATCTTCATTCATTTTGTGATTAGGCACAAT
128 ATCTCCATTCATTTTGTGATTAGGCACCAT
* * * * * * *
3501243 AAACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTTTTTTTTTGCATGGAAATCTTTT
1 AAACACATTCCCTTCATTAGGATAAATCATATTGATG---CTTTTGTTTCGCA-AGAAAGCTTTT
* * * ** * ** *
3501308 CTTTGC-CCTATTTTCCT-TAAAATCAAAGTTCAT-CCCTTAAATAAGACAGCCGTCAATTCTCG
62 CTTTCCACCAATTTT--TGTAAAGTCAAAGTT--TGCCCTTAAATAAGACAAACATTGATTCTAG
** * *** * *
3501370 T-AACAGTCTCCATTCCTTTCAAGATTGGGAAGCCA-
123 TGATGA-TCTCCATTCATTTTGTGATTAGGCA-CCAT
* * * ** * ** * *
3501405 AAACACATTCTCTTCTTTAGGATACATCGCATTGATGCTTTGGCGTCACAACAAAAGCTTTTCTT
1 AAACACATTCCCTTCATTAGGATAAATCATATTGATGCTTTTGTTTCGCAA-GAAAGCTTTTCTT
* * * *
3501470 TCCACC-ATTTTCGATAGAA-TCAAAGTTTGTCTCTTATATAAGACAAACA-TGAATACTCA-TA
65 TCCACCAATTTTTG-TA-AAGTCAAAGTTTG-CCCTTAAATAAGACAAACATTG-ATTCT-AGT-
* * *
3501531 GA-AATCTCCATTC-TTTTCTTGGTTAGGCACCAT
124 GATGATCTCCATTCATTTT-GTGATTAGGCACCAT
* * * * * * * * * *
3501564 AAATATAGTCTTCTT-TTTAGGATACATGATATTGATG-TTTTGGTTTTGCAAGAAAGGTATT-T
1 AAACACATTC-CCTTCATTAGGATAAATCATATTGATGCTTTT-GTTTCGCAAGAAAGCTTTTCT
* * * * ** ** *
3501626 TCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGTGGTAAAC-TTGGATTCTAGAGAT
64 TTCCACCAATTTTTGTAAAGTCAAAGTTTG-CCCTTAAATAAGACAAACATT-GATTCTAGTGAT
* *
3501690 GATCTTCATTCATTTTGTGATTAGGCACTAT
127 GATCTCCATTCATTTTGTGATTAGGCACCAT
* ** * * * * *
3501721 AAACACATTCTCC-TCTTTAGGATAAATGGTATTGATGATTTTCTTT-GACATGGAAATCCTTTC
1 AAACACATTC-CCTTCATTAGGATAAATCATATTGATGCTTTTGTTTCG-CA-AGAAAGCTTTTC
* * * * * * *
3501784 TTTGC-CCTATTTTCCT-TAAAATCAAAGTTCTTCCCGTAAATAAGACACACATCGATTCTCA-T
63 TTTCCACCAATTTT--TGTAAAGTCAAAGTT-TGCCCTTAAATAAGACAAACATTGATTCT-AGT
** * *** * *
3501846 -AACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCA-
124 GATGA-TCTCCATTCATTTTGTGATTAGGCA-CCAT
* *** * * *
3501879 AAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTT
1 AAACACATTCCCTTCATTAGGATAAATCATATTGATGCTTTTGTTTCGCAAG-AAAGCTTTTCTT
* ** * *
3501944 TCCACC-ATTTTTGATAGAA-TCAAAGTTTGTCTCTTGTATAAGACAAACATT-A--CTACTCAT
65 TCCACCAATTTTTG-TA-AAGTCAAAGTTTG-CCCTTAAATAAGACAAACATTGATTCTAGTGAT
* **
3502004 GCAATTCCCCATTTTTTTTAG-GATTAGGCACCAT
127 G--A-TCTCCATTCATTTT-GTGATTAGGCACCAT
** * * * *
3502038 -AA-ACATAGCCTTCTGTTTAGAATAGA-CAATATTGACG-TTTTAGTTAT-GCAAGAAAGGCAT
1 AAACACATTCCCTTC--ATTAGGATAAATC-ATATTGATGCTTTT-GTT-TCGCAAGAAA-GC-T
* * * *
3502098 TTTC---CCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATAT-ATTCTA
59 TTTCTTTCCACCAATTTTTGTAAAGTCAAAGTTTG-CCCTTAAATAAGACAAACAT-TGATTCTA
* *
3502159 GTGATGATCTTCATTCA-TTTGTGATTAGGCACTAT
122 GTGATGATCTCCATTCATTTTGTGATTAGGCACCAT
* * * * * *
3502194 AAACACATTCCCTTCATTAGGATAAATGATGTTGAAGACTTTTTTTTTGCATAGAAATCTTTTCT
1 AAACACATTCCCTTCATTAGGATAAATCATATTGATG-CTTTTGTTTCGCA-AGAAAGCTTTTCT
* * ** ** * *
3502259 TTGCC-CCATTTTCTTG-AAAATCAAAGTTCATG-CCTTAAATAAGACAGGCATCAATTCTCGTA
64 TT-CCACCAATTT-TTGTAAAGTCAAAGTT--TGCCCTTAAATAAGACAAACATTGATTCTAGTG
* * * ** * * *
3502321 ACGGTCTCCATTTCGTTCAAG-G-CTGGGAAGCCA-
125 ATGATCTCCA-TTCATT-TTGTGATTAGGCA-CCAT
* * ** * * * *
3502354 AAACACATTCTCTTCATTAGGATACATCGCATTGATGCTTTGGTGTCACAACAAAAGCTTTTCTT
1 AAACACATTCCCTTCATTAGGATAAATCATATTGATGCTTTTGTTTCGCAA-GAAAGCTTTTCTT
* * * * * *
3502419 TCCGCC-ATTTTTGATAGAA-TCAAAGTTTGTCTCTTACACAAGATAAACA-TGAATACTCA-TA
65 TCCACCAATTTTTG-TA-AAGTCAAAGTTTG-CCCTTAAATAAGACAAACATTG-ATTCT-AGT-
* * *
3502480 GA-AATCTCCATTC-TTTTCTTGGTTAGGCACCAT
124 GATGATCTCCATTCATTTT-GTGATTAGGCACCAT
* * * * * * * *
3502513 AAAC-CTAGTCTTCTT-TTTAGGATACATGATATTGATG-TTTTGGTTTTGCAAGAAAGGTATT-
1 AAACAC-ATTC-CCTTCATTAGGATAAATCATATTGATGCTTTT-GTTTCGCAAGAAAGCTTTTC
* * * * ** * *
3502574 TTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGTGGCAAAC-TTGGATTCTAGAGA
63 TTTCCACCAATTTTTGTAAAGTCAAAGTTTG-CCCTTAAATAAGACAAACATT-GATTCTAGTGA
* *
3502638 TGATCTTCATTCATTTTGTGATTAGGCACTAT
126 TGATCTCCATTCATTTTGTGATTAGGCACCAT
* ** * * * * *
3502670 AAACACATTCCCTTCATTAGAATAAATGGTATTGATGATTTTCTTT-GACATGGAAATCCTTTCT
1 AAACACATTCCCTTCATTAGGATAAATCATATTGATGCTTTTGTTTCG-CA-AGAAAGCTTTTCT
* * * * * * *
3502734 TTGC-CCTATTTTCCT-TAAAATCAAAGTTCTTCCCGTAAATAAGACACACATCGATTCTCA-T-
64 TTCCACCAATTTT--TGTAAAGTCAAAGTT-TGCCCTTAAATAAGACAAACATTGATTCT-AGTG
** * *** * *
3502795 AACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCA-
125 ATGA-TCTCCATTCATTTTGTGATTAGGCA-CCAT
* *** * * *
3502828 AAACACATTCCCTTCATTAGGATACATGGCATTGATCCTTTGGTGTCGCAAGAAAAGCTTTTCTT
1 AAACACATTCCCTTCATTAGGATAAATCATATTGATGCTTTTGTTTCGCAAG-AAAGCTTTTCTT
* * * * * *
3502893 TCCACCATTTTTTATAGAA-TCAAAGTTTGTCTCTTATATAAGACAAACATT-A--CTACTCATG
65 TCCACCAATTTTTGTA-AAGTCAAAGTTTG-CCCTTAAATAAGACAAACATTGATTCTAGTGATG
* *
3502954 CAATTCCCCATT-TTTTTAG-GATTAGGCACCAT
128 --A-TCTCCATTCATTTT-GTGATTAGGCACCAT
** * *
3502986 -AA-ACATAGCCTTCTGATTAGGATAGA-CAATATTGACG-TTTTAGTTAT-GCAAGAAAGGCAT
1 AAACACATTCCCTTC--ATTAGGATAAATC-ATATTGATGCTTTT-GTT-TCGCAAGAAA-GC-T
* * * * *
3503046 TTTC---CCACCAATTTTTGTACAGTCTAAGTTTGTGCCTCAAATGAGACAAACATAT-ATTCTA
59 TTTCTTTCCACCAATTTTTGTAAAGTCAAAGTTTG-CCCTTAAATAAGACAAACAT-TGATTCTA
* *
3503107 GTGATGATCTTCATTCATTTTGTGATTAGGCACTAT
122 GTGATGATCTCCATTCATTTTGTGATTAGGCACCAT
* * * * *
3503143 AAACACATTCCCTTCATTAGGATAAATGATATTGAAGACTTTTTTTTTGCATAGAAATCTTTTCT
1 AAACACATTCCCTTCATTAGGATAAATCATATTGATG-CTTTTGTTTCGCA-AGAAAGCTTTTCT
* * ** *** * *
3503208 TTGCC-CCATTTTCTTG-AAAATCAAAGTTCATG-CCTTAAATAAGACAGGCAACAATTCTTGTA
64 TT-CCACCAATTT-TTGTAAAGTCAAAGTT--TGCCCTTAAATAAGACAAACATTGATTCTAGTG
* * * ** * * * *
3503270 ACGGTCTCCATTTCGTTCAAG-G-CTGGGAAGCC-G
125 ATGATCTCCA-TTCATT-TTGTGATTAGGCA-CCAT
* * *** * * * *
3503303 AAACACATTCTCTTCATTAGGATACATTGCATTGATGCTTTGGTGTCACAACAAAAGCTTTTCTT
1 AAACACATTCCCTTCATTAGGATAAATCATATTGATGCTTTTGTTTCGCAA-GAAAGCTTTTCTT
* * * * * * *
3503368 TTCTCC-ATTTTTGATAGAA-TCAAAGTTTGTCTCTTACACAAGATAAACA-TGAATACTCA-TA
65 TCCACCAATTTTTG-TA-AAGTCAAAGTTTG-CCCTTAAATAAGACAAACATTG-ATTCT-AGT-
* * *
3503429 GA-AATCTCCATTC-TTTTCTTGGTTAGGCACCAT
124 GATGATCTCCATTCATTTT-GTGATTAGGCACCAT
* * * * * * * * ***
3503462 AAAC-CTAGTCTTCTT-TTTAGGATACATGATATTGATGCTTTGGTTTTGCAGGAAAGGAATT-T
1 AAACAC-ATTC-CCTTCATTAGGATAAATCATATTGATGCTTTTGTTTCGCAAGAAAGCTTTTCT
* * * * ** *
3503524 TCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGTGACAAAC-TTGGTTTCTAGTGAT
64 TTCCACCAATTTTTGTAAAGTCAAAGTTTG-CCCTTAAATAAGACAAACATT-GATTCTAGTGAT
** * * * *
3503588 GATCTTTATTGAATTTGTGATTAGGCTCCAG
127 GATCTCCATTCATTTTGTGATTAGGCACCAT
** ** * * * * * * *
3503619 AAACACATTTTCTTCAACAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCCT
1 AAACACATTCCCTTCATTAGGATAAATCATATTGATGCTTTTGTTTCGCA-AGAAAGCTTTTCTT
* ** * * *** * * *
3503684 TGC-CTTATTTTCCT-TAAAATCAAA-TTCAT-CCCTTAAATAAGGCCCGCATCGATTCTCGTAA
65 TCCACCAATTTT--TGTAAAGTCAAAGTT--TGCCCTTAAATAAGACAAACATTGATTCTAGTGA
** * * ** * * *
3503745 CAATCTCCAATCCTTTCATGACTGGGAAGCCA-
126 TGATCTCCATTCATTTTGTGATTAGGCA-CCAT
* * * * * * * * *
3503777 AATCAAATTCCCTTCATTAAGATACATGGA-ATTGATGCTTTGGTGTCGCAAGAAAAGATTTCCT
1 AAACACATTCCCTTCATTAGGATAAAT-CATATTGATGCTTTTGTTTCGCAAG-AAAGCTTTTCT
* * * * * *
3503841 TTCGATC-ATTTTTGATAGAA-TCAAAGTTTGCCTCTCATATGAGACAAACA-TGAATACTCA-T
64 TTCCACCAATTTTTG-TA-AAGTCAAAGTTTGCC-CTTAAATAAGACAAACATTG-ATTCT-AGT
** *
3503902 -ACAAATC-CCATTC-TTTTCTTGATTAGGCACCAT
124 GA-TGATCTCCATTCATTTT-GTGATTAGGCACCAT
** * * *
3503935 -AA-ACATAGCCTTCTGATTAGGATAGA-CGATATTGACG-TTTTAGCTAT-GCAAGAAAGGCAT
1 AAACACATTCCCTTC--ATTAGGATAAATC-ATATTGATGCTTTT-G-TTTCGCAAGAAA-GC-T
* * * * *
3503995 TTTC---CCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATAGATTCTAG
59 TTTCTTTCCACCAATTTTTGTAAAGTCAAAGTTTG-CCCTTAAATAAGACAAACATTGATTCTAG
* *
3504057 TGATGATCTTCATTCATTTTGTGATTAGGCACTAT
123 TGATGATCTCCATTCATTTTGTGATTAGGCACCAT
* ** * * * * * *
3504092 AAACATATTCCCTTCATTAGGATAAAAGATATTGATGATTTT-TTTTGCATGGAAATCCTGTCTT
1 AAACACATTCCCTTCATTAGGATAAATCATATTGATGCTTTTGTTTCGCA-AGAAAGCTTTTCTT
* * * * * * * *
3504156 TGCC-CC-ATTTTCCT-TAAAATCAAAGTTCTTCACGTAAATAAGACAAGCATCGATTATCA-TA
65 T-CCACCAATTTT--TGTAAAGTCAAAGTT-TGCCCTTAAATAAGACAAACATTGATTCT-AGTG
** * *** * * *
3504217 ACAATCTCCATTCCTTTCAAGA-TGGGAAGC-T
125 ATGATCTCCATTCATTTTGTGATTAGGCACCAT
* * *** * * * *
3504248 AAAACATATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTAGCAAGAAAAGCTTTTCT
1 -AAACACATTCCCTTCATTAGGATAAATCATATTGATGCTTTTGTTTCGCAAG-AAAGCTTTTCT
* * * *
3504313 TTCCATC-ATTTTTGATAGAA-TCAAAGTTTGCCTCTTATATAAGACAAACATTGCTACTCA-TG
64 TTCCACCAATTTTTG-TA-AAGTCAAAGTTTGCC-CTTAAATAAGACAAACATTGATTCT-AGTG
* * ** *
3504375 CA-AATCCCCATTTTTTTTTTGGATTAGGCACCAT
125 -ATGATCTCCATTCATTTTGT-GATTAGGCACCAT
* * * * * * *
3504409 AGACATAAT-CTTCTCATTAGGATAAACCATATTGATGCTTTTGTTCCGCAAGACATGCTTTT-T
1 AAACACATTCCCT-TCATTAGGATAAATCATATTGATGCTTTTGTTTCGCAAGA-AAGCTTTTCT
* * * * * *
3504472 TCCCA-CAGATTATTGTAATGTCTAAGTTTGCGCCTCAAATGAGACAAACATTGATTCTAGTGAT
64 TTCCACCA-ATTTTTGTAAAGTCAAAGTTTGC-CCTTAAATAAGACAAACATTGATTCTAGTGAT
* *
3504536 GATCTTCATTCATTTTGTGATTAGGCACCAC
127 GATCTCCATTCATTTTGTGATTAGGCACCAT
* * * * * *
3504567 AAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTT-TTTTGGATGGAAATCTTTTCTT
1 AAACACATTCCCTTCATTAGGATAAATCATATTGATGCTTTTGTTTCGCA-AGAAAGCTTTTCTT
* ** * * * ** * *
3504631 TGC-CTTATTTTCT-TGAAAATCAAAGTTAAT-CCCTTAAATAAAACAAGCACCGATTCTCG-CA
65 TCCACCAATTTT-TGT-AAAGTCAAAGTT--TGCCCTTAAATAAGACAAACATTGATTCTAGTGA
** * *** * *
3504692 ACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCA-
126 TGA-TCTCCATTCATTTTGTGATTAGGCA-CCAT
* *** * * * *
3504724 AAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCACAAGAAAAGCTTTTCTT
1 AAACACATTCCCTTCATTAGGATAAATCATATTGATGCTTTTGTTTCGCAAG-AAAGCTTTTCTT
* * * *
3504789 TCCATC-ATTATTGATAGAA-TCAAAGTTTGCCTCTTATATAAGACAAACATT-ACTACTCA-TG
65 TCCACCAATTTTTG-TA-AAGTCAAAGTTTGCC-CTTAAATAAGACAAACATTGA-TTCT-AGTG
* * **
3504850 CA-AATCCCCATTTTTTTTAG-GATTAGGCACCAT
125 -ATGATCTCCATTCATTTT-GTGATTAGGCACCAT
* * * * * *
3504883 AGACATAAT-CTTCTCATTAGGATAAACCATTTTGATGCTTTTGTTTCGCAAGAAATGCTTTT-T
1 AAACACATTCCCT-TCATTAGGATAAATCATATTGATGCTTTTGTTTCGCAAGAAA-GCTTTTCT
* * * * * * *
3504946 TCCCACAAATTATTGTAATGTCTAAGTTTGCGCCTCAAATGAGACAAACATTGATTCTAGTGATG
64 TTCCACCAATTTTTGTAAAGTCAAAGTTTGC-CCTTAAATAAGACAAACATTGATTCTAGTGATG
* *
3505011 ATCTTCATTCATTTTGTGATTAGGCACTAT
128 ATCTCCATTCATTTTGTGATTAGGCACCAT
* * * *
3505041 AAACACATTCCCTTCATTAGGATAAATGATATTGATG-TTTT-TTT-GGATGGAAATCTTTTCTT
1 AAACACATTCCCTTCATTAGGATAAATCATATTGATGCTTTTGTTTCGCA-AGAAAGCTTTTCTT
* ***** * * * * * ** * *
3505103 TGCTTTGTTTTCTTG-AAAATCAAAGTTCAT-CCTTTAAATAAGTCAAGCATCGATTCCCG-CAA
65 TCCACCAATTT-TTGTAAAGTCAAAGTT--TGCCCTTAAATAAGACAAACATTGATTCTAGTGAT
* * * *** * *
3505165 CAGTCTCCGTTCCTTTCAAGA-TGGGAAGCCA-
127 GA-TCTCCATTCATTTTGTGATTAGGCA-CCAT
* *** * * * *
3505196 AAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCTCCAGAAAAGCTTTTCTT
1 AAACACATTCCCTTCATTAGGATAAATCATATTGATGCTTTTGTTTCGCAAG-AAAGCTTTTCTT
* * * *
3505261 TTCACC-ATTTTTGATAGAA-TCAAAGTTTGCTTCTTATATAAGACAAACATT-ACTACTCA-TG
65 TCCACCAATTTTTG-TA-AAGTCAAAGTTTGC-CCTTAAATAAGACAAACATTGA-TTCT-AGTG
* * **
3505322 CA-AATCCCCATTTTTTTTAG-GA-TAGGCACCAT
125 -ATGATCTCCATTCATTTT-GTGATTAGGCACCAT
* * * * *
3505354 AGACATAAT-CTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAAGGCTTTT-T
1 AAACACATTCCCT-TCATTAGGATAAATCATATTGATGCTTTTGTTTCGCAAGAAA-GCTTTTCT
* * * ** * * * *
3505417 TCCCAACAATTATTGTAAAGTCTTAGTTTGTGCCTCAAATGAGACAAACATTGATTCTGGTGATG
64 TTCCACCAATTTTTGTAAAGTCAAAGTTTG-CCCTTAAATAAGACAAACATTGATTCTAGTGATG
* *
3505482 ATCTTCATTCATTTTGTGATTAGGCACTAT
128 ATCTCCATTCATTTTGTGATTAGGCACCAT
* * * * * *
3505512 AAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTTTTGCATGGAAATCTTTT
1 AAACACATTCCCTTCATTAGGATAAATCATATTGATG---CTTTTGTTTCGCA-AGAAAGCTTTT
* ** * * *
3505577 CTTTGC-CTTATTTTCT-TGAAAATCAAAGTTCAT-CCCTTAAATAAGACAAGCATCGATTCTCA
62 CTTTCCACCAATTTT-TGT-AAAGTCAAAGTT--TGCCCTTAAATAAGACAAACATTGATTCT-A
* ** * *** * *
3505639 --CAACAGTCTCCATTCCTTTCAAGATTAAGAAGCCA-
122 GTGATGA-TCTCCATTCATTTTGTGATTAGGCA-CCAT
* * *** * * *
3505674 AAACACATTCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAAAAAAGCTTTTCTT
1 AAACACATTCCCTTCATTAGGATAAATCATATTGATGCTTTTGTTTCGC-AAGAAAGCTTTTCTT
* * * * * * * *
3505739 TTCTCC-GTTTTTGATAGAA-TCAAAGTTTATCTCTTATATAAGACAAACA-TGAATACGCA-T-
65 TCCACCAATTTTTG-TA-AAGTCAAAGTTT-GCCCTTAAATAAGACAAACATTG-ATTC-TAGTG
** * *
3505799 ACAAATCCCCATTC-TTTTCTTGATTAGGCACCAT
125 A-TGATCTCCATTCATTTT-GTGATTAGGCACCAT
* * * * * *
3505833 AAACATAGT-CTTCTCATTAGGATACATTATATTGATGCTTTGGATTT-GCAAGAAATGC-TTT-
1 AAACACATTCCCT-TCATTAGGATAAATCATATTGATGCTTTTG-TTTCGCAAGAAA-GCTTTTC
* ** * * * * *
3505894 TTTCCTGCCAATTTTTGTAGGGTCTAAGTTCGTG-CCTCAAATGAGGCAAACATGGATTCTAGTG
63 TTTCC-ACCAATTTTTGTAAAGTCAAAGTT--TGCCCTTAAATAAGACAAACATTGATTCTAGTG
* ** * * *
3505958 AT-AACTTGATTCATTTTGTGATTAAGCACTAG
125 ATGATCTCCATTCATTTTGTGATTAGGCACCAT
* *
3505990 AAAGACATTCTCC-TCATTAGGATAAATGATATTGAT
1 AAACACATTC-CCTTCATTAGGATAAATCATATTGAT
3506026 AATTTGCTTT
Statistics
Matches: 5911, Mismatches: 1704, Indels: 1290
0.66 0.19 0.14
Matches are distributed among these distances:
149 5 0.00
150 58 0.01
151 44 0.01
152 6 0.00
153 1 0.00
154 3 0.00
155 73 0.01
156 348 0.06
157 978 0.17
158 2031 0.34
159 1683 0.28
160 332 0.06
161 156 0.03
162 184 0.03
163 7 0.00
164 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (157 bp):
AAACACATTCCCTTCATTAGGATAAATCATATTGATGCTTTTGTTTCGCAAGAAAGCTTTTCTTT
CCACCAATTTTTGTAAAGTCAAAGTTTGCCCTTAAATAAGACAAACATTGATTCTAGTGATGATC
TCCATTCATTTTGTGATTAGGCACCAT
Found at i:3499638 original size:474 final size:474
Alignment explanation
Indices: 3497563--3506402 Score: 11965
Period size: 475 Copynumber: 18.6 Consensus size: 474
3497553 ATAAACACGT
*
3497563 ATCGATTCTCATAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAG
1 ATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAG
* * *
3497628 GATACATGGCATTGATACTTTGGTATCGCAAGAAAAGCTTTTCCTTCCACCATTTTTGATAGAAT
66 GATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT
* *
3497693 CAAGGTTTGTCTCTTATATAAGACAAACATTACTACTAATGCAAATCCCCATTTTTTTTAGGATT
131 CAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTTTTTAGGATT
* * *
3497758 AGGCACCATAGACATAATCTTCTCATTAGGAT--ACCACATTGATGCTTTTGTTTTGCAAGAAAG
196 AGGCACCATAAACATAGTCTTCTCATTAGGATAAACCATATTGATGCTTTTG-TTTGCAAGAAAG
* * * * *
3497821 GCATTTTTCCCACCAATTATTGTAAAGTCTAAGTTCGCGCCTCAAATGAGACAAACATTGATTCA
260 GCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATTGATTCT
*
3497886 AGTGTTGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATG
325 AGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATG
* * *
3497951 ATATTGACGATTTTTTTTTGCATGGAAATCATTTCATTGCCTTATTTT-TCTGAAAATCAAAGTT
390 ATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCT-TGAAAATCAAAGTT
3498015 CATCCCTTAAATAAGACAAGC
454 CATCCCTTAAATAAGACAAGC
* * * * * * *
3498036 ATCGATTCTCTTAACAATCTCCATTCCGTCCAAGACTAGGAAGCCGAAACACATTCTCTTCATTA
1 ATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACACATTCCCTTCATTA
* * *
3498101 GGATACATCGCATTGATGCTTTGGTGTCACAACAAAAGCTTTTCTTTCCACCATTTTTGATAGAA
65 GGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAA
* *
3498166 TCAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCAAGCAAATCCCCA-TTTTTTTGGGAT
130 TCAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTTTTTAGGAT
* * * * * *
3498230 TAGGCACCATAAACATAGCCTTCTGATTTGGATAGACGATATTGACG-TTTTAGTTATGCAAGAA
195 TAGGCACCATAAACATAGTCTTCTCATTAGGATAAACCATATTGATGCTTTT-GTT-TGCAAGAA
* * * *
3498294 AGGTTTTTTTCCCACCAATTATTGTAAAGTCTTAGTTTATGCCTCAAATGAGACAAACATTGATT
258 AGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATTGATT
* *
3498359 CTAGTGCTGATCTTCATTCATTCTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAA
323 CTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAA
* *
3498424 TGATATTGATGATTTTTTTTTGCATGGAAAACTTTTCTTTGCCCTATTTTCCTT-AAAATCAAAG
388 TGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTT-CTTGAAAATCAAAG
3498488 TTCATCCCTTAAATAAGACAAGC
452 TTCATCCCTTAAATAAGACAAGC
* *
3498511 GTCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACATTCTCTTCATTA
1 ATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACACATTCCCTTCATTA
* * *
3498576 GGATACATTGCATTGATGCTTTGGTGTCACAACAAAAGCTTTTCTTTCCACCATTTTTGATAGAA
65 GGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAA
* * * *
3498641 TCAAAGTTTGTCTCTTATATAAGACAAACATGAATAGTCATAG-AAATCTCCATTCTTTTCTT-G
130 TCAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCAT-GCAAATCCCCATT-TTTT-TTAG
* ** * ** *
3498704 G-TTAGGCACCATAAACCTAGTCTTCTTTTTAGGATACATGATATTGATG-TTTTGGTTTTGCAG
192 GATTAGGCACCATAAACATAGTCTTCTCATTAGGATAAACCATATTGATGCTTTT-G-TTTGCAA
* *
3498767 GAAAGG-TATTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATAG
255 GAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATTG
* *
3498831 ATTCTAGTGATGATCTTCATTCATTTTGTGATTAAGCACTATAAACACATTCTCC-TCTTTAGGA
320 ATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCTTCATTAGGA
* * * * *
3498895 TAAATGGTATTGACGATTTTCTTTTACATGGAAATCTTTTCTTTGCCCTATTTTCCTT-AAAATC
384 TAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTT-CTTGAAAATC
** * *
3498959 AAAAATCATTCCTTAAATAAGACAGGC
448 AAAGTTCATCCCTTAAATAAGACAAGC
* * *
3498986 ATCGATTCTCGTAATAGTCTCCATTTCTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATCA
1 ATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACACATTCCCTTCATTA
* *
3499051 GGATACATGGCATTGATACTTTGGTGTCGTAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAA
65 GGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAA
* *
3499116 TCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCGCATTTTTTTTAGGAT
130 TCAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTTTTTAGGAT
* *
3499181 TAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAA
195 TAGGCACCATAAACATAGTCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTT-GCAAGAAA
* * * *
3499246 GGCTTTTTTCCCACCAATTATTGTAAAGTCTTAGTTTGCGTCTCAAATGAGACAAACATTGATTC
259 GGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATTGATTC
3499311 TAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAAT
324 TAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAAT
* *
3499376 GATATTGACGATTTTTTTTCG-ATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTT
389 GATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTT
3499440 CATCCCTTAAATAAGACAAGC
454 CATCCCTTAAATAAGACAAGC
* *
3499461 ATCGATTCTCGCAATAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAG
1 ATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAG
* * * * *
3499526 GATACTTGGCATTGATGCTTTGGTGTCTCAAGAGAAGCTTTTCTTTTCACCATTTTTGAAAGAAT
66 GATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT
* * * *
3499591 CAAAGTTTATCTCTTATATAAGACAAAGATTACAAATCATGCAAATCCCCATTTTTTTTAGGATT
131 CAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTTTTTAGGATT
* * *
3499656 TGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAAG
196 AGGCACCATAAACATAGTCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTT-GCAAGAAAG
* **
3499721 GCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGTGGTAAAC-TTGGATTC
260 GCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATT-GATTC
* *
3499785 TAGAGATGATCTTCATTCATTTTGTGATTAGGCACTATGAACACATTCCCTTCATTAGGATAAAT
324 TAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAAT
*
3499850 GATATTGATGATTTTTTTTTGGATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTT
389 GATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTT
3499915 CATCCCTTAAATAAGACAAGC
454 CATCCCTTAAATAAGACAAGC
*
3499936 ATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAG
1 ATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAG
*
3500001 GATACATGGCAATGATGCTTTGGTG-CTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAA
66 GATACATGGCATTGATGCTTTGGTGTC-GCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAA
3500065 TCAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTTTTTAGGAT
130 TCAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTTTTTAGGAT
* * *
3500130 TAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAGGAAA
195 TAGGCACCATAAACATAGTCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTT-GCAAGAAA
* * * **
3500195 GGCTTTTTTCCCACCAATTATTGCAAAGTCTTAGTTTGCACCTCAAATGAGACAAACATTGATTC
259 GGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATTGATTC
3500260 TAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAAT
324 TAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAAT
* *
3500325 GATATTGATGATTTTTTTTTTTGCATAGAAATCTTTTCTTTGCCTTATTTTCTTAAAAATCAAAG
389 GATATTGATGA--TTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAG
3500390 TTCATCCCTTAAATAAGACAAGC
452 TTCATCCCTTAAATAAGACAAGC
* * *
3500413 ATCGATTCTCGTAATAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACAGATTCTCTTCATTA
1 ATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACACATTCCCTTCATTA
* * * **
3500478 GGATACATGGCATTGATGCTTTGGTGTCGCAAAAAAAACTTTTCTTTCCTCTGTTTTTGATAGAA
65 GGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAA
* * * * *
3500543 TCAAAGTTTGTTTCTTATATAAGACAAACATGAATACGCATACAAATCCCCATTCTTTTCTT--G
130 TCAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATT-TTTT-TTAGG
* ** *
3500606 ATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATTATATTGATGCTTTGGATTTGCAAGA
193 ATTAGGCACCATAAACATAGTCTTCTCATTAGGATAAACCATATTGATGCTTTTG-TTTGCAAGA
* * * *
3500671 AATGCTTTTTTCCTACCAATTTTTGTAAAGTCTTAGTTTGCGCCTCAAATGAGACAAACATTGAT
257 AAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATTGAT
3500736 TC---T-A-G---TTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAA
322 TCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAA
* *
3500793 ATGATATTGATGAGTTTTTTTTGAATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAG
387 ATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAG
*
3500858 TTCATCTCTTAAATAAGACAAGC
452 TTCATCCCTTAAATAAGACAAGC
* * *
3500881 TTCGATTCTCGCAACAGTCTCTATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAG
1 ATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAG
* *
3500946 GATACATGGCATTGATGCTTTGGTGTCGCCAGAAAAGCTTTTCTTTTCACCATTTTTGATAGAAT
66 GATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT
* *
3501011 CAAAGTTTGTCTCTTATATAAGACAAGCATTACTACTCCTGCAAATCCCCATTTTTTTTAGGATT
131 CAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTTTTTAGGATT
* * * * * * *
3501076 AGGCACCATAGACATAATCGTCTCATTAGGATAAACCATATTGATGCTTTGGTTTCCCGAGAAAT
196 AGGCACCATAAACATAGTCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTT-GCAAGAAAG
* * * * *
3501141 GCTTTTTTCCCGCCAACTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAAAATTGATTCT
260 GCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATTGATTCT
* * *
3501206 AGAGATGATCTTCATTCATTTTGTGATTAGGCACAATAAACACATTCCCCTCATTAGGATAAATG
325 AGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATG
*
3501271 ATATTGATGATTTTTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTT-AAAATCAAA
390 ATATTGATGA---TTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTT-CTTGAAAATCAAA
3501335 GTTCATCCCTTAAATAAGAC-AGCC
451 GTTCATCCCTTAAATAAGACAAG-C
* * * *
3501359 GTCAATTCTCGTAACAGTCTCCATTCCTTTCAAGATTGGGAAGCCAAAACACATTCTCTTCTTTA
1 ATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACACATTCCCTTCATTA
* * * * *
3501424 GGATACATCGCATTGATGCTTTGGCGTCACAACAAAAGCTTTTCTTTCCACCATTTTCGATAGAA
65 GGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAA
* * *
3501489 TCAAAGTTTGTCTCTTATATAAGACAAACATGAATACTCATAG-AAATCTCCATTCTTTTCTT-G
130 TCAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCAT-GCAAATCCCCATT-TTTT-TTAG
* ** * **
3501552 G-TTAGGCACCATAAATATAGTCTTCTTTTTAGGATACATGATATTGATG-TTTTGGTTTTGCAA
192 GATTAGGCACCATAAACATAGTCTTCTCATTAGGATAAACCATATTGATGCTTTT-G-TTTGCAA
* * **
3501615 GAAAGG-TATTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGTGGTAAAC-TTG
255 GAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATT-
* *
3501678 GATTCTAGAGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC-TCTTTAGG
319 GATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCTTCATTAGG
* * * *
3501742 ATAAATGGTATTGATGA-TTTTCTTTGACATGGAAATCCTTTCTTTGCCCTATTTTCCTT-AAAA
383 ATAAATGATATTGATGATTTTTTTTTG-CATGGAAATCTTTTCTTTGCCTTATTTT-CTTGAAAA
* *
3501805 TCAAAGTTCTTCCCGTAAATAAGACACA-C
446 TCAAAGTTCATCCCTTAAATAAGACA-AGC
*
3501834 ATCGATTCTCATAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAG
1 ATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAG
*
3501899 GATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT
66 GATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT
* *
3501964 CAAAGTTTGTCTCTTGTATAAGACAAACATTACTACTCATGCAATTCCCCATTTTTTTTAGGATT
131 CAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTTTTTAGGATT
* ** * * * *
3502029 AGGCACCATAAACATAGCCTTCTGTTTAGAATAGACAATATTGACG-TTTTAGTTATGCAAGAAA
196 AGGCACCATAAACATAGTCTTCTCATTAGGATAAACCATATTGATGCTTTT-GTT-TGCAAGAAA
*
3502093 GGC-ATTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATAT-ATT
259 GGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACAT-TGATT
3502156 CTAGTGATGATCTTCATTCA-TTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAA
323 CTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAA
* * * **
3502220 TGATGTTGAAGACTTTTTTTTTGCATAGAAATCTTTTCTTTGCCCCATTTTCTTGAAAATCAAAG
388 TGATATTGATGA-TTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAG
* *
3502285 TTCATGCCTTAAATAAGACAGGC
452 TTCATCCCTTAAATAAGACAAGC
* * * * * *
3502308 ATCAATTCTCGTAACGGTCTCCATTTCGTTCAAGGCTGGGAAGCCAAAACACATTCTCTTCATTA
1 ATCGATTCTCGTAACAGTCTCCATTCCTTTCAA-GATGGGAAGCCAAAACACATTCCCTTCATTA
* * * *
3502373 GGATACATCGCATTGATGCTTTGGTGTCACAACAAAAGCTTTTCTTTCCGCCATTTTTGATAGAA
65 GGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAA
* * * * * *
3502438 TCAAAGTTTGTCTCTTACACAAGATAAACATGAATACTCATAG-AAATCTCCATTCTTTTCTT-G
130 TCAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCAT-GCAAATCCCCATT-TTTT-TTAG
* ** * **
3502501 G-TTAGGCACCATAAACCTAGTCTTCTTTTTAGGATACATGATATTGATG-TTTTGGTTTTGCAA
192 GATTAGGCACCATAAACATAGTCTTCTCATTAGGATAAACCATATTGATGCTTTT-G-TTTGCAA
* * *
3502564 GAAAGG-TATTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGTGGCAAAC-TTG
255 GAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATT-
* *
3502627 GATTCTAGAGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGAA
319 GATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGA
* * * *
3502692 TAAATGGTATTGATGA-TTTTCTTTGACATGGAAATCCTTTCTTTGCCCTATTTTCCTT-AAAAT
384 TAAATGATATTGATGATTTTTTTTTG-CATGGAAATCTTTTCTTTGCCTTATTTT-CTTGAAAAT
* *
3502755 CAAAGTTCTTCCCGTAAATAAGACACA-C
447 CAAAGTTCATCCCTTAAATAAGACA-AGC
*
3502783 ATCGATTCTCATAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAG
1 ATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAG
* *
3502848 GATACATGGCATTGATCCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTTATAGAAT
66 GATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT
*
3502913 CAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCATGCAATTCCCCA-TTTTTTTAGGATT
131 CAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTTTTTAGGATT
* * * * *
3502977 AGGCACCATAAACATAGCCTTCTGATTAGGATAGACAATATTGACG-TTTTAGTTATGCAAGAAA
196 AGGCACCATAAACATAGTCTTCTCATTAGGATAAACCATATTGATGCTTTT-GTT-TGCAAGAAA
* *
3503041 GGC-ATTTTCCCACCAATTTTTGTACAGTCTAAGTTTGTGCCTCAAATGAGACAAACATAT-ATT
259 GGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACAT-TGATT
3503104 CTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAA
323 CTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAA
* * **
3503169 TGATATTGAAGACTTTTTTTTTGCATAGAAATCTTTTCTTTGCCCCATTTTCTTGAAAATCAAAG
388 TGATATTGATGA-TTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAG
* *
3503234 TTCATGCCTTAAATAAGACAGGC
452 TTCATCCCTTAAATAAGACAAGC
* * * * * * * * *
3503257 AACAATTCTTGTAACGGTCTCCATTTCGTTCAAGGCTGGGAAGCCGAAACACATTCTCTTCATTA
1 ATCGATTCTCGTAACAGTCTCCATTCCTTTCAA-GATGGGAAGCCAAAACACATTCCCTTCATTA
* * * * *
3503322 GGATACATTGCATTGATGCTTTGGTGTCACAACAAAAGCTTTTCTTTTCTCCATTTTTGATAGAA
65 GGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAA
* * * * * *
3503387 TCAAAGTTTGTCTCTTACACAAGATAAACATGAATACTCATAG-AAATCTCCATTCTTTTCTT-G
130 TCAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCAT-GCAAATCCCCATT-TTTT-TTAG
* ** * ** * *
3503450 G-TTAGGCACCATAAACCTAGTCTTCTTTTTAGGATACATGATATTGATGCTTTGGTTTTGCAGG
192 GATTAGGCACCATAAACATAGTCTTCTCATTAGGATAAACCATATTGATGCTTTTG-TTTGCAAG
** *
3503514 AAAGG-AATTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGTGACAAAC-TTGG
256 AAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATT-G
* * * * * * * ** **
3503577 TTTCTAGTGATGATCTTTATTGAATTTGTGATTAGGCTCCAGAAACACATTTTCTTCAACAGGAT
320 ATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGAT
* *
3503642 AAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCCTTGCCTTATTTTCCTT-AAAATCA
385 AAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTT-CTTGAAAATCA
* **
3503706 AA-TTCATCCCTTAAATAAGGCCCGC
449 AAGTTCATCCCTTAAATAAGACAAGC
* * * * *
3503731 ATCGATTCTCGTAACAATCTCCAATCCTTTCATGACTGGGAAGCCAAATCAAATTCCCTTCATTA
1 ATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACACATTCCCTTCATTA
* * * * * *
3503796 AGATACATGGAATTGATGCTTTGGTGTCGCAAGAAAAGATTTCCTTTCGATCATTTTTGATAGAA
65 GGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAA
* * * * * *
3503861 TCAAAGTTTGCCTCTCATATGAGACAAACATGAATACTCATACAAAT-CCCATTCTTTTCTT--G
130 TCAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATT-TTTT-TTAGG
* * * * * *
3503923 ATTAGGCACCATAAACATAGCCTTCTGATTAGGATAGACGATATTGACG-TTTTAGCTATGCAAG
193 ATTAGGCACCATAAACATAGTCTTCTCATTAGGATAAACCATATTGATGCTTTT-G-TTTGCAAG
* *
3503987 AAAGGC-ATTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATAGA
256 AAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATTGA
*
3504051 TTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACATATTCCCTTCATTAGGATA
321 TTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATA
* * * **
3504116 AAAGATATTGATGA-TTTTTTTTGCATGGAAATCCTGTCTTTGCCCCATTTTCCTT-AAAATCAA
386 AATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTT-CTTGAAAATCAA
* * *
3504179 AGTTCTTCACGTAAATAAGACAAGC
450 AGTTCATCCCTTAAATAAGACAAGC
* * * * *
3504204 ATCGATTATCATAACAATCTCCATTCCTTTCAAGATGGGAAGCTAAAACATATTCCCTTCATTAG
1 ATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAG
* * *
3504269 GATACATGGCATTGATACTTTGGTGTAGCAAGAAAAGCTTTTCTTTCCATCATTTTTGATAGAAT
66 GATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT
* * *
3504334 CAAAGTTTGCCTCTTATATAAGACAAACATTGCTACTCATGCAAATCCCCATTTTTTTTTTGGAT
131 CAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCA-TTTTTTTTAGGAT
* * * *
3504399 TAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTCCGCAAGACA
195 TAGGCACCATAAACATAGTCTTCTCATTAGGATAAACCATATTGATGCTTTTGTT-TGCAAGAAA
* * * *
3504464 TGCTTTTTTCCCA-CAGATTATTGTAATGTCTAAGTTTGCGCCTCAAATGAGACAAACATTGATT
259 GGCTTTTTTCCCACCA-ATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATTGATT
* *
3504528 CTAGTGATGATCTTCATTCATTTTGTGATTAGGCACCACAAACACATTCCCTTCATTAGGATAAA
323 CTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAA
*
3504593 TGATATTGATGA-TTTTTTTTGGATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGT
388 TGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGT
* *
3504657 TAATCCCTTAAATAAAACAAGC
453 TCATCCCTTAAATAAGACAAGC
* *
3504679 ACCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAG
1 ATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAG
* * * *
3504744 GATACATGGCATTGATACTTTGGTGTCACAAGAAAAGCTTTTCTTTCCATCATTATTGATAGAAT
66 GATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT
*
3504809 CAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTTTTTAGGATT
131 CAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTTTTTAGGATT
* * * *
3504874 AGGCACCATAGACATAATCTTCTCATTAGGATAAACCATTTTGATGCTTTTGTTTCGCAAGAAAT
196 AGGCACCATAAACATAGTCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTT-GCAAGAAAG
* * * *
3504939 GCTTTTTTCCCACAAATTATTGTAATGTCTAAGTTTGCGCCTCAAATGAGACAAACATTGATTCT
260 GCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATTGATTCT
3505004 AGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATG
325 AGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATG
* * *
3505069 ATATTGATG---TTTTTTTGGATGGAAATCTTTTCTTTGCTTTGTTTTCTTGAAAATCAAAGTTC
390 ATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTC
* *
3505131 ATCCTTTAAATAAGTCAAGC
455 ATCCCTTAAATAAGACAAGC
* * *
3505151 ATCGATTCCCGCAACAGTCTCCGTTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAG
1 ATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAG
* * *
3505216 GATACATGGCATTGATGCTTTGGTGTCTCCAGAAAAGCTTTTCTTTTCACCATTTTTGATAGAAT
66 GATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT
3505281 CAAAGTTTG-CTTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTTTTTAGGA-
131 CAAAGTTTGTC-TCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTTTTTAGGAT
* *
3505344 TAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAA
195 TAGGCACCATAAACATAGTCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTT-GCAAGAAA
* * *
3505409 GGCTTTTTTCCCAACAATTATTGTAAAGTCTTAGTTTGTGCCTCAAATGAGACAAACATTGATTC
259 GGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATTGATTC
*
3505474 TGGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAAT
324 TAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAAT
3505539 GATATTGATGATTTTTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAA
389 GATATTGATGA---TTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAA
3505604 GTTCATCCCTTAAATAAGACAAGC
451 GTTCATCCCTTAAATAAGACAAGC
** ** *
3505628 ATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATTAAGAAGCCAAAACACATTCTCTTCATTA
1 ATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACACATTCCCTTCATTA
* * * *
3505693 GGATACATGGCATTGATGCTTTGGTGTCGCAAAAAAAGCTTTTCTTTTCTCCGTTTTTGATAGAA
65 GGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAA
* * * * *
3505758 TCAAAGTTTATCTCTTATATAAGACAAACATGAATACGCATACAAATCCCCATTCTTTTCTT--G
130 TCAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATT-TTTT-TTAGG
* ** *
3505821 ATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATTATATTGATGCTTTGGATTTGCAAGA
193 ATTAGGCACCATAAACATAGTCTTCTCATTAGGATAAACCATATTGATGCTTTTG-TTTGCAAGA
* ** ** * * *
3505886 AATGCTTTTTTCCTGCCAATTTTTGTAGGGTCTAAGTTCGTGCCTCAAATGAGGCAAACATGGAT
257 AAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATTGAT
* * * * *
3505951 TCTAGTGAT-AACTTGATTCATTTTGTGATTAAGCACTAGAAAGACATTCTCC-TCATTAGGATA
322 TCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCTTCATTAGGATA
* ** * *
3506014 AATGATATTGATAATTTGCTTTTGCCA-AGAAATCTTATCTTTGCCTTATTTTCCTT-AAAATCA
386 AATGATATTGATGATTTTTTTTTG-CATGGAAATCTTTTCTTTGCCTTATTTT-CTTGAAAATCA
* * * *
3506077 AAATTCGTTCCTTAAATAAGATAAGC
449 AAGTTCATCCCTTAAATAAGACAAGC
* * * * *
3506103 ATCGATTCTCATAATAGTCCCCTTTCCTTTCAAGATTGGGAAACCAAAACACATTCCCTTCATTA
1 ATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACACATTCCCTTCATTA
* * * * *
3506168 GGATACATGACATTGA----ATGGTGTCGCAAGAAAAGCTTTCCTTTCCATCGTTTTTGATAGAA
65 GGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAA
* * * * * ***
3506229 TCAAGGTTTGCCTCTCATATAAGACAAACATGAATACTCAAATAAATCCCCATTCTTTTCTT--G
130 TCAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATT-TTTT-TTAGG
* * * * * *
3506292 ATTAGGCATCATAAACATAGCCTTCTGATTAGGATAGACGATATTGACG-TTTTAGTTATGCAAG
193 ATTAGGCACCATAAACATAGTCTTCTCATTAGGATAAACCATATTGATGCTTTT-GTT-TGCAAG
* **
3506356 AATGG-GATTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCA
256 AAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCA
3506403 TTCATTTTGT
Statistics
Matches: 7489, Mismatches: 737, Indels: 285
0.88 0.09 0.03
Matches are distributed among these distances:
465 2 0.00
466 7 0.00
467 247 0.03
468 101 0.01
470 105 0.01
471 348 0.05
472 437 0.06
473 568 0.08
474 1502 0.20
475 2497 0.33
476 444 0.06
477 232 0.03
478 666 0.09
479 314 0.04
480 17 0.00
481 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (474 bp):
ATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAG
GATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT
CAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTTTTTAGGATT
AGGCACCATAAACATAGTCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTGCAAGAAAGG
CTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATTGATTCTA
GTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGA
TATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCA
TCCCTTAAATAAGACAAGC
Found at i:3500277 original size:949 final size:948
Alignment explanation
Indices: 3497563--3531393 Score: 38454
Period size: 949 Copynumber: 35.9 Consensus size: 948
3497553 ATAAACACGT
*
3497563 ATCGATTCTCATAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAG
1 ATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAG
* * *
3497628 GATACATGGCATTGATACTTTGGTATCGCAAGAAAAGCTTTTCCTTCCACCATTTTTGATAGAAT
66 GATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT
* * *
3497693 CAAGGTTTGTCTCTTATATAAGACAAACATTACTACTAATGCAAATCCCCATTTTTTTTAGGATT
131 CAAAGTTTGTCTCTTATATAAGACAAACATTACAACTCATGCAAATCCCCATTTTTTTT-GGATT
* *
3497758 AGGCACCATAGACATAATCTTCTCATTAGGAT--ACCACATTGATGCTTTTGTTTTGCAAGAAAG
195 AGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAAG
* * * * *
3497821 GCATTTTTCCCACCAATTATTGTAAAGTCTAAGTTCGCGCCTCAAATGAGACAAACATTGATTCA
260 GCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATTGATTCT
*
3497886 AGTGTTGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATG
325 AGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATG
* * *
3497951 ATATTGACGATTTTTTTTTGCATGGAAATCATTTCATTGCCTTATTTT-TCTGAAAATCAAAGTT
390 ATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCT-TGAAAATCAAAGTT
** * * * *
3498015 CATCCCTTAAATAAGACAAGCATCGATTCTCTTAACAATCTCCATTCCGTCCAAGACTAGGAAGC
454 CATCCCTTAAATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGA-TGGGAAGC
* * * * * *
3498080 CGAAACACATTCTCTTCATTAGGATACATCGCATTGATGCTTTGGTGTCACAACAAAAGCTTTTC
518 CAAAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTC
*
3498145 TTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCAAGCA
583 TTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCATGCA
* * ** * * * *
3498210 AATCCCCA-TTTTTTTGGGATTAGGCACCATAAACATAGCCTTCTGATTTGGATAGACGATATTG
648 AATCCCCATTTTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTG
* * * * **
3498274 ACG-TTTTAGTTAT-GCAAGAAAGGTTTTTTTCCCACCAATTATTGTAAAGTCTTAGTTTATGCC
713 ATGCTTTT-GTT-TCGCAAGAAATGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTGCGCC
* *
3498337 TCAAATGAGACAAACATTGATTCTAGTGCTGATCTTCATTCATTCTGTGATTAGGCACTATAAAC
776 TCAAATGAGACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAAC
* *
3498402 ACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGCATGGAAAACTTTTCTTTGCC
841 ACATTCCCTTCATTAGGATAAATGATATTGATGA-TTTTTTTTGGATGGAAATCTTTTCTTTGCC
*
3498467 CTATTTTCCTT-AAAATCAAAGTTCATCCCTTAAATAAGACAAGC
905 TTATTTT-CTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGC
* *
3498511 GTCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACATTCTCTTCATTA
1 ATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACACATTCCCTTCATTA
* * *
3498576 GGATACATTGCATTGATGCTTTGGTGTCACAACAAAAGCTTTTCTTTCCACCATTTTTGATAGAA
65 GGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAA
* * *
3498641 TCAAAGTTTGTCTCTTATATAAGACAAACATGA-ATAGTCATAG-AAATCTCCATTCTTTTCTTG
130 TCAAAGTTTGTCTCTTATATAAGACAAACATTACA-ACTCAT-GCAAATCCCCATT-TTTT-TTG
* * * ** * ** * *
3498704 G-TTAGGCACCATAAACCTAGTCTTCTTTTTAGGATACATGATATTGATG-TTTTGGTTTTGCAG
191 GATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTT-GTTTCGCAA
* *
3498767 GAAAGG-TATTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATAG
255 GAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATTG
* *
3498831 ATTCTAGTGATGATCTTCATTCATTTTGTGATTAAGCACTATAAACACATTCTCC-TCTTTAGGA
320 ATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCTTCATTAGGA
* * * * *
3498895 TAAATGGTATTGACGATTTTCTTTTACATGGAAATCTTTTCTTTGCCCTATTTTCCTT-AAAATC
384 TAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTT-CTTGAAAATC
** * * ** * *
3498959 AAAAATCATTCCTTAAATAAGACAGGCATCGATTCTCGTAATAGTCTCCATTTCTTTCAAGATTG
448 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGA-TG
* *
3499024 GGAAGCCAAAACACATTCCCTTCATCAGGATACATGGCATTGATACTTTGGTGTCGTAAGAAAAG
512 GGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAG
*
3499089 CTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACT
577 CTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATTACTACT
*
3499154 CATGCAAATCCGCATTTTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACC
642 CATGCAAATCCCCATTTTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACC
* *
3499219 ATATTGATGCTTTTGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTTAGTTTG
707 ATATTGATGCTTTTGTTTCGCAAGAAATGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTG
*
3499284 CGTCTCAAATGAGACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTAT
772 CGCCTCAAATGAGACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTAT
* *
3499349 AAACACATTCCCTTCATTAGGATAAATGATATTGACGATTTTTTTTCGATGGAAATCTTTTCTTT
837 AAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTGGATGGAAATCTTTTCTTT
3499414 GCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGC
902 GCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGC
* *
3499461 ATCGATTCTCGCAATAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAG
1 ATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAG
* * * * *
3499526 GATACTTGGCATTGATGCTTTGGTGTCTCAAGAGAAGCTTTTCTTTTCACCATTTTTGAAAGAAT
66 GATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT
* * *
3499591 CAAAGTTTATCTCTTATATAAGACAAAGATTACAAATCATGCAAATCCCCATTTTTTTTAGGATT
131 CAAAGTTTGTCTCTTATATAAGACAAACATTACAACTCATGCAAATCCCCATTTTTTTT-GGATT
*
3499656 TGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAAG
195 AGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAAG
* **
3499721 GCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGTGGTAAAC-TTGGATTC
260 GCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATT-GATTC
* *
3499785 TAGAGATGATCTTCATTCATTTTGTGATTAGGCACTATGAACACATTCCCTTCATTAGGATAAAT
324 TAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAAT
*
3499850 GATATTGATGATTTTTTTTTGGATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTT
389 GATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTT
*
3499915 CATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCC
454 CATCCCTTAAATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGGAAGCC
* *
3499980 AAAACACATTCCCTTCATTAGGATACATGGCAATGATGCTTTGGTG-CTGCAAGAAAAGCTTTTC
519 AAAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTC-GCAAGAAAAGCTTTTC
3500044 TTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCATGCA
583 TTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCATGCA
3500109 AATCCCCATTTTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTG
648 AATCCCCATTTTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTG
* * * * *
3500174 ATGCTTTTGTTTCGCAGGAAAGGCTTTTTTCCCACCAATTATTGCAAAGTCTTAGTTTGCACCTC
713 ATGCTTTTGTTTCGCAAGAAATGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTGCGCCTC
3500239 AAATGAGACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACAC
778 AAATGAGACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACAC
* *
3500304 ATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTTTGCATAGAAATCTTTTCTTTGCC
843 ATTCCCTTCATTAGGATAAATGATATTGATGA---TTTTTTTTGGATGGAAATCTTTTCTTTGCC
*
3500369 TTATTTTCTTAAAAATCAAAGTTCATCCCTTAAATAAGACAAGC
905 TTATTTTCTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGC
* * *
3500413 ATCGATTCTCGTAATAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACAGATTCTCTTCATTA
1 ATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACACATTCCCTTCATTA
* * * **
3500478 GGATACATGGCATTGATGCTTTGGTGTCGCAAAAAAAACTTTTCTTTCCTCTGTTTTTGATAGAA
65 GGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAA
* * * *
3500543 TCAAAGTTTGTTTCTTATATAAGACAAACATGA-ATACGCATACAAATCCCCATTCTTTTCTT-G
130 TCAAAGTTTGTCTCTTATATAAGACAAACATTACA-ACTCATGCAAATCCCCATT-TTTT-TTGG
* * * ** *
3500606 ATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATTATATTGATGCTTTGGATTT-GCAAG
192 ATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTG-TTTCGCAAG
* * * *
3500670 AAATGCTTTTTTCCTACCAATTTTTGTAAAGTCTTAGTTTGCGCCTCAAATGAGACAAACATTGA
256 AAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATTGA
3500735 TTC---T-A-G---TTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATA
321 TTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATA
* *
3500792 AATGATATTGATGAGTTTTTTTTGAATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAA
386 AATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAA
* * * *
3500857 GTTCATCTCTTAAATAAGACAAGCTTCGATTCTCGCAACAGTCTCTATTCCTTTCAAGATGGGAA
451 GTTCATCCCTTAAATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGGAA
* *
3500922 GCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCCAGAAAAGCTTT
516 GCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTT
* * *
3500987 TCTTTTCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAGCATTACTACTCCTG
581 TCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCATG
*
3501052 CAAATCCCCATTTTTTTTAGGATTAGGCACCATAGACATAATCGTCTCATTAGGATAAACCATAT
646 CAAATCCCCATTTTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATAT
* * * * *
3501117 TGATGCTTTGGTTTCCCGAGAAATGCTTTTTTCCCGCCAACTATTGTAAAGTCTAAGTTTGCGCC
711 TGATGCTTTTGTTTCGCAAGAAATGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTGCGCC
* * *
3501182 TCAAATGAGACAAAAATTGATTCTAGAGATGATCTTCATTCATTTTGTGATTAGGCACAATAAAC
776 TCAAATGAGACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAAC
* *
3501247 ACATTCCCCTCATTAGGATAAATGATATTGATGATTTTTTTTTTTTGCATGGAAATCTTTTCTTT
841 ACATTCCCTTCATTAGGATAAATGATATTGATGA----TTTTTTTTGGATGGAAATCTTTTCTTT
*
3501312 GCCCTATTTTCCTT-AAAATCAAAGTTCATCCCTTAAATAAGAC-AGCC
902 GCCTTATTTT-CTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAG-C
* * * *
3501359 GTCAATTCTCGTAACAGTCTCCATTCCTTTCAAGATTGGGAAGCCAAAACACATTCTCTTCTTTA
1 ATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACACATTCCCTTCATTA
* * * * *
3501424 GGATACATCGCATTGATGCTTTGGCGTCACAACAAAAGCTTTTCTTTCCACCATTTTCGATAGAA
65 GGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAA
* *
3501489 TCAAAGTTTGTCTCTTATATAAGACAAACATGA-ATACTCATAG-AAATCTCCATTCTTTTCTTG
130 TCAAAGTTTGTCTCTTATATAAGACAAACATTACA-ACTCAT-GCAAATCCCCATT-TTTT-TTG
* * * ** * ** *
3501552 G-TTAGGCACCATAAATATAGTCTTCTTTTTAGGATACATGATATTGATG-TTTTGGTTTTGCAA
191 GATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTT-GTTTCGCAA
* * **
3501615 GAAAGG-TATTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGTGGTAAAC-TTG
255 GAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATT-
* *
3501678 GATTCTAGAGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC-TCTTTAGG
319 GATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCTTCATTAGG
* * * *
3501742 ATAAATGGTATTGATGA-TTTTCTTTGACATGGAAATCCTTTCTTTGCCCTATTTTCCTT-AAAA
383 ATAAATGATATTGATGATTTTTTTTTG-CATGGAAATCTTTTCTTTGCCTTATTTT-CTTGAAAA
* * *
3501805 TCAAAGTTCTTCCCGTAAATAAGACACA-CATCGATTCTCATAACAGTCTCCATTCCTTTCAAGA
446 TCAAAGTTCATCCCTTAAATAAGACA-AGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGA
3501869 TGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAA
510 TGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAA
*
3501934 AGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTGTATAAGACAAACATTACTA
575 AGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATTACTA
* * ** ** * *
3501999 CTCATGCAATTCCCCATTTTTTTTAGGATTAGGCACCATAAACATAGCCTTCTGTTTAGAATAGA
640 CTCATGCAAATCCCCATTTTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAA
* * * * *
3502064 CAATATTGACG-TTTTAGTTAT-GCAAGAAAGGC-ATTTTCCCACCAATTTTTGTAAAGTCTAAG
705 CCATATTGATGCTTTT-GTT-TCGCAAGAAATGCTTTTTTCCCACCAATTATTGTAAAGTCTAAG
*
3502126 TTTGTGCCTCAAATGAGACAAACATAT-ATTCTAGTGATGATCTTCATTCA-TTTGTGATTAGGC
768 TTTGCGCCTCAAATGAGACAAACAT-TGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGC
* * * *
3502189 ACTATAAACACATTCCCTTCATTAGGATAAATGATGTTGAAGACTTTTTTTTTGCATAGAAATCT
832 ACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGA--TTTTTTTTGGATGGAAATCT
** * *
3502254 TTTCTTTGCCCCATTTTCTTGAAAATCAAAGTTCATGCCTTAAATAAGACAGGC
895 TTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGC
* * * * * *
3502308 ATCAATTCTCGTAACGGTCTCCATTTCGTTCAAGGCTGGGAAGCCAAAACACATTCTCTTCATTA
1 ATCGATTCTCGTAACAGTCTCCATTCCTTTCAA-GATGGGAAGCCAAAACACATTCCCTTCATTA
* * * *
3502373 GGATACATCGCATTGATGCTTTGGTGTCACAACAAAAGCTTTTCTTTCCGCCATTTTTGATAGAA
65 GGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAA
* * * * *
3502438 TCAAAGTTTGTCTCTTACACAAGATAAACATGA-ATACTCATAG-AAATCTCCATTCTTTTCTTG
130 TCAAAGTTTGTCTCTTATATAAGACAAACATTACA-ACTCAT-GCAAATCCCCATT-TTTT-TTG
* * * ** * ** *
3502501 G-TTAGGCACCATAAACCTAGTCTTCTTTTTAGGATACATGATATTGATG-TTTTGGTTTTGCAA
191 GATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTT-GTTTCGCAA
* * *
3502564 GAAAGG-TATTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGTGGCAAAC-TTG
255 GAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATT-
* *
3502627 GATTCTAGAGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGAA
319 GATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGA
* * * *
3502692 TAAATGGTATTGATGA-TTTTCTTTGACATGGAAATCCTTTCTTTGCCCTATTTTCCTT-AAAAT
384 TAAATGATATTGATGATTTTTTTTTG-CATGGAAATCTTTTCTTTGCCTTATTTT-CTTGAAAAT
* * *
3502755 CAAAGTTCTTCCCGTAAATAAGACACA-CATCGATTCTCATAACAGTCTCCATTCCTTTCAAGAT
447 CAAAGTTCATCCCTTAAATAAGACA-AGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGAT
*
3502819 GGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATCCTTTGGTGTCGCAAGAAAA
511 GGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAA
*
3502884 GCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATTACTAC
576 GCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATTACTAC
* * ** * *
3502949 TCATGCAATTCCCCA-TTTTTTTAGGATTAGGCACCATAAACATAGCCTTCTGATTAGGATAGAC
641 TCATGCAAATCCCCATTTTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAAC
* * * * * *
3503013 AATATTGACG-TTTTAGTTAT-GCAAGAAAGGC-ATTTTCCCACCAATTTTTGTACAGTCTAAGT
706 CATATTGATGCTTTT-GTT-TCGCAAGAAATGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGT
*
3503075 TTGTGCCTCAAATGAGACAAACATAT-ATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCA
769 TTGCGCCTCAAATGAGACAAACAT-TGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCA
* * *
3503139 CTATAAACACATTCCCTTCATTAGGATAAATGATATTGAAGACTTTTTTTTTGCATAGAAATCTT
833 CTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGA--TTTTTTTTGGATGGAAATCTT
** * *
3503204 TTCTTTGCCCCATTTTCTTGAAAATCAAAGTTCATGCCTTAAATAAGACAGGC
896 TTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGC
* * * * * * * * *
3503257 AACAATTCTTGTAACGGTCTCCATTTCGTTCAAGGCTGGGAAGCCGAAACACATTCTCTTCATTA
1 ATCGATTCTCGTAACAGTCTCCATTCCTTTCAA-GATGGGAAGCCAAAACACATTCCCTTCATTA
* * * * *
3503322 GGATACATTGCATTGATGCTTTGGTGTCACAACAAAAGCTTTTCTTTTCTCCATTTTTGATAGAA
65 GGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAA
* * * * *
3503387 TCAAAGTTTGTCTCTTACACAAGATAAACATGA-ATACTCATAG-AAATCTCCATTCTTTTCTTG
130 TCAAAGTTTGTCTCTTATATAAGACAAACATTACA-ACTCAT-GCAAATCCCCATT-TTTT-TTG
* * * ** * ** * * *
3503450 G-TTAGGCACCATAAACCTAGTCTTCTTTTTAGGATACATGATATTGATGCTTTGGTTTTGCAGG
191 GATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAG
** *
3503514 AAAGG-AATTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGTGACAAAC-TTGG
256 AAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATT-G
* * * * * * * ** **
3503577 TTTCTAGTGATGATCTTTATTGAATTTGTGATTAGGCTCCAGAAACACATTTTCTTCAACAGGAT
320 ATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGAT
* *
3503642 AAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCCTTGCCTTATTTTCCTT-AAAATCA
385 AAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTT-CTTGAAAATCA
* ** ** * * *
3503706 AA-TTCATCCCTTAAATAAGGCCCGCATCGATTCTCGTAACAATCTCCAATCCTTTCATGACTGG
449 AAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGA-TGG
* * * * * *
3503770 GAAGCCAAATCAAATTCCCTTCATTAAGATACATGGAATTGATGCTTTGGTGTCGCAAGAAAAGA
513 GAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGC
* * * * * * * *
3503835 TTTCCTTTCGATCATTTTTGATAGAATCAAAGTTTGCCTCTCATATGAGACAAACATGAATACTC
578 TTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATTACTACTC
* * ** * *
3503900 ATACAAAT-CCCATTCTTTTCTT--GATTAGGCACCATAAACATAGCCTTCTGATTAGGATAGAC
643 ATGCAAATCCCCATT-TTTT-TTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAAC
* * * * * *
3503962 GATATTGACG-TTTTAGCTAT-GCAAGAAAGGC-ATTTTCCCACCAATTTTTGTAAAGTCTAAGT
706 CATATTGATGCTTTT-G-TTTCGCAAGAAATGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGT
* *
3504024 TTGTGCCTCAAATGAGACAAACATAGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCAC
769 TTGCGCCTCAAATGAGACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCAC
* * * * *
3504089 TATAAACATATTCCCTTCATTAGGATAAAAGATATTGATGATTTTTTTTGCATGGAAATCCTGTC
834 TATAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTGGATGGAAATCTTTTC
** * * *
3504154 TTTGCCCCATTTTCCTT-AAAATCAAAGTTCTTCACGTAAATAAGACAAGC
899 TTTGCCTTATTTT-CTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGC
* * * * *
3504204 ATCGATTATCATAACAATCTCCATTCCTTTCAAGATGGGAAGCTAAAACATATTCCCTTCATTAG
1 ATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAG
* * *
3504269 GATACATGGCATTGATACTTTGGTGTAGCAAGAAAAGCTTTTCTTTCCATCATTTTTGATAGAAT
66 GATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT
* * *
3504334 CAAAGTTTGCCTCTTATATAAGACAAACATTGCTACTCATGCAAATCCCCATTTTTTTTTTGGAT
131 CAAAGTTTGTCTCTTATATAAGACAAACATTACAACTCATGCAAATCCCCA--TTTTTTTTGGAT
* *
3504399 TAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTCCGCAAGACA
194 TAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAA
* * * *
3504464 TGCTTTTTTCCCA-CAGATTATTGTAATGTCTAAGTTTGCGCCTCAAATGAGACAAACATTGATT
259 GGCTTTTTTCCCACCA-ATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATTGATT
* *
3504528 CTAGTGATGATCTTCATTCATTTTGTGATTAGGCACCACAAACACATTCCCTTCATTAGGATAAA
323 CTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAA
*
3504593 TGATATTGATGA-TTTTTTTTGGATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGT
388 TGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGT
* * * *
3504657 TAATCCCTTAAATAAAACAAGCACCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGC
453 TCATCCCTTAAATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGGAAGC
*
3504722 CAAAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCACAAGAAAAGCTTTTC
518 CAAAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTC
* * *
3504787 TTTCCATCATTATTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCA
583 TTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCATGCA
*
3504852 AATCCCCATTTTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATTTTG
648 AATCCCCATTTTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTG
* *
3504917 ATGCTTTTGTTTCGCAAGAAATGCTTTTTTCCCACAAATTATTGTAATGTCTAAGTTTGCGCCTC
713 ATGCTTTTGTTTCGCAAGAAATGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTGCGCCTC
3504982 AAATGAGACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACAC
778 AAATGAGACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACAC
* *
3505047 ATTCCCTTCATTAGGATAAATGATATTGATG--TTTTTTTGGATGGAAATCTTTTCTTTGCTTTG
843 ATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTGGATGGAAATCTTTTCTTTGCCTTA
* *
3505110 TTTTCTTGAAAATCAAAGTTCATCCTTTAAATAAGTCAAGC
908 TTTTCTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGC
* * *
3505151 ATCGATTCCCGCAACAGTCTCCGTTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAG
1 ATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAG
* * *
3505216 GATACATGGCATTGATGCTTTGGTGTCTCCAGAAAAGCTTTTCTTTTCACCATTTTTGATAGAAT
66 GATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT
*
3505281 CAAAGTTTG-CTTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTTTTTAGGA-
131 CAAAGTTTGTC-TCTTATATAAGACAAACATTACAACTCATGCAAATCCCCATTTTTTTT-GGAT
3505344 TAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAA
194 TAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAA
* * *
3505409 GGCTTTTTTCCCAACAATTATTGTAAAGTCTTAGTTTGTGCCTCAAATGAGACAAACATTGATTC
259 GGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATTGATTC
*
3505474 TGGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAAT
324 TAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAAT
3505539 GATATTGATGATTTTTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAA
389 GATATTGATGA---TTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAA
**
3505604 GTTCATCCCTTAAATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATTAAGA
451 GTTCATCCCTTAAATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGA-TGGGA
* * *
3505669 AGCCAAAACACATTCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAAAAAAGCTT
515 AGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTT
* * * * * * *
3505734 TTCTTTTCTCCGTTTTTGATAGAATCAAAGTTTATCTCTTATATAAGACAAACATGAATACGCAT
580 TTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCAT
* * * * **
3505799 ACAAATCCCCATTCTTTTCTT--GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATTA
645 GCAAATCCCCATT-TTTT-TTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCA
* ** * ** *
3505862 TATTGATGCTTTGGATTT-GCAAGAAATGCTTTTTTCCTGCCAATTTTTGTAGGGTCTAAGTTCG
708 TATTGATGCTTTTG-TTTCGCAAGAAATGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTG
* * * * * * *
3505926 TGCCTCAAATGAGGCAAACATGGATTCTAGTGAT-AACTTGATTCATTTTGTGATTAAGCACTAG
772 CGCCTCAAATGAGACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTAT
* * * * * *
3505990 AAAGACATTCTCC-TCATTAGGATAAATGATATTGATAATTTGCTTTTGCCA-AGAAATCTTATC
837 AAACACATTC-CCTTCATTAGGATAAATGATATTGATGATTT-TTTTTG-GATGGAAATCTTTTC
* * * *
3506053 TTTGCCTTATTTTCCTT-AAAATCAAAATTCGTTCCTTAAATAAGATAAGC
899 TTTGCCTTATTTT-CTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGC
* * * * *
3506103 ATCGATTCTCATAATAGTCCCCTTTCCTTTCAAGATTGGGAAACCAAAACACATTCCCTTCATTA
1 ATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACACATTCCCTTCATTA
* * * * *
3506168 GGATACATGACATTGA----ATGGTGTCGCAAGAAAAGCTTTCCTTTCCATCGTTTTTGATAGAA
65 GGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAA
* * * * ***
3506229 TCAAGGTTTGCCTCTCATATAAGACAAACATGA-ATACTCAAATAAATCCCCATTCTTTTCTT-G
130 TCAAAGTTTGTCTCTTATATAAGACAAACATTACA-ACTCATGCAAATCCCCATT-TTTT-TTGG
* * ** * * * *
3506292 ATTAGGCATCATAAACATAGCCTTCTGATTAGGATAGACGATATTGACG-TTTTAGTTAT-GCAA
192 ATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTT-GTT-TCGCAA
* **
3506355 GAATGG-GATTTTCCCACCAATTTTTGTAAAGTCTAA----GT---T----T--G--------TG
255 GAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATTG
*
3506398 ---C----------C-TCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC-TCCTTAGGA
320 ATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCTTCATTAGGA
* * * * *
3506448 TAAATGGTATTGATGATTTTCTTTTACATAGAAATCTTTTCTTTGCCCTATTTTCCTT-AAAATC
384 TAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTT-CTTGAAAATC
* * * * *
3506512 AAAGTTCTTCCCTTAAATAAGACACGCATCGATTCTCATAATAGTCTCCACTCCTTTCAAGATGG
448 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGG
*
3506577 GAAGCCAAAACACATTCCCTTCATTAGAATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGC
513 GAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGC
* *
3506642 TTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTATACAAG--AAACATTACTACTC
578 TTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATTACTACTC
3506705 ATGCAAATCCCCA-TTTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCA
643 ATGCAAATCCCCATTTTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCA
* * *
3506769 TATTGATGCTCTTGTTTCGCAAGAAAAGCTTTTTT-CCA-AAATTATTGTAAAGTCTAAGTTTGC
708 TATTGATGCTTTTGTTTCGCAAGAAATGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTGC
* * * *
3506832 ACCTCAAATGAGACAAACATTAATTCTAGTGATGATATTCATTCA-TTT-TGA--AAGCACTATA
773 GCCTCAAATGAGACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATA
*
3506893 AACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGGATGAAAATCTTTTCTTT
838 AACACATTCCCTTCATTAGGATAAATGATATTGATGA-TTTTTTTTGGATGGAAATCTTTTCTTT
*
3506958 GCCTTATTTTCTTGAAAATCGAAGTTCATCCCTTAAATAAGACAAGC
902 GCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGC
* *
3507005 ATTGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAG
1 ATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAG
** * * *
3507070 GGCACATGGCATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTTTCAACATTTTTGATAGAAT
66 GATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT
*
3507135 CAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTTTTTAGGATT
131 CAAAGTTTGTCTCTTATATAAGACAAACATTACAACTCATGCAAATCCCCATTTTTTTT-GGATT
* * * *
3507200 AGGCACCATAGACATAATCTTATCATTAGGATAAACCATATTGATGCTTTTGTTCCGCAAGACAT
195 AGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAAG
* * * *
3507265 GCTTTTTTCCCACAAATTATTGTAATGTCTAAGTTTGCGCCTCAAATGAGACAAACATTGATTCT
260 GCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATTGATTCT
* *
3507330 AGTGATGATCTTCATTCATTTTGTGATTAGGCACCACAAACACATTCCCTTCATTAGGATAAATG
325 AGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATG
* *
3507395 ATATTGATGATTTTTTTTTGGATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTA
390 ATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTC
* * *
3507460 ATCCCTTAAATAAAACAAGCACCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCA
455 ATCCCTTAAATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGGAAGCCA
*
3507525 AAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCACAAGAAAAGCTTTTCTT
520 AAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTT
* * *
3507590 TCCATCATTATTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAA
585 TCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCATGCAAA
*
3507655 TCCCCATTTTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATTTTGAT
650 TCCCCATTTTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGAT
* *
3507720 GCTTTTGTTTCGCAAGAAATGCTTTTTTCCCACAAATTATTGTAATGTCTAAGTTTGCGCCTCAA
715 GCTTTTGTTTCGCAAGAAATGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTGCGCCTCAA
3507785 ATGAGACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAT
780 ATGAGACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAT
*
3507850 TCCCTTCATTAGGATAAATGATATTGATG--TTTTTTTGGATGGAAATCTTTTCTTTGCTTTATT
845 TCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTGGATGGAAATCTTTTCTTTGCCTTATT
* *
3507913 TTCTTGAAAATCAAAGTTCATCCTTTAAATAAGTCAAGC
910 TTCTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGC
* * *
3507952 ATCGATTCCCGCAACAGTCTCCGTTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAG
1 ATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAG
* * *
3508017 GATACATGGCATTGATGCTTTGGTGTCTCCAGAAAAGCTTTTCTTTTCACCATTTTTGATAGAAT
66 GATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT
*
3508082 CAAAGTTTG-CTTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTTTTTAGGA-
131 CAAAGTTTGTC-TCTTATATAAGACAAACATTACAACTCATGCAAATCCCCATTTTTTTT-GGAT
3508145 TAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAA
194 TAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAA
* * *
3508210 GGCTTTTTTCCCAACAATTATTGTAAAGTCTTAGTTTGTGCCTCAAATGAGACAAACATTGATTC
259 GGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATTGATTC
*
3508275 TGGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAAT
324 TAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAAT
3508340 GATATTGATGATTTTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAG
389 GATATTGATGA--TTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAG
**
3508405 TTCATCCCTTAAATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATTAAGAA
452 TTCATCCCTTAAATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGA-TGGGAA
* * *
3508470 GCCAAAACACATTCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAAAAAAGCTTT
516 GCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTT
* * * * * * * *
3508535 TCTTTTCTCCGTTTTTGATAGAATCAAAGTTTATCTCTTATATAAGACAAACATGAATACGCATA
581 TCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCATG
* * * **
3508600 CAAATCCCCATTCTTTTCTT--GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATTAT
646 CAAATCCCCATT-TTTT-TTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCAT
* ** * ** * *
3508663 ATTGATGCTTTGGATTT-GCAAGAAATGCTTTTTTCCTGCCAATTTTTGTAGGGTCTAAGTTCGT
709 ATTGATGCTTTTG-TTTCGCAAGAAATGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTGC
* * * * * *
3508727 GCCTCAAATGAGGCAAACATGGATTCTAGTGAT-AACTTGATTCATTTTGTGATTAAGCACTAGA
773 GCCTCAAATGAGACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATA
* * * * * *
3508791 AAGACATTCTCC-TCATTAGGATAAATGATATTGATAATTTGCTTTTGCCA-AGAAATCTTATCT
838 AACACATTC-CCTTCATTAGGATAAATGATATTGATGATTT-TTTTTG-GATGGAAATCTTTTCT
* * * *
3508854 TTGCCTTATTTTCCTT-AAAATCAAAATTCGTTCCTTAAATAAGATAAGC
900 TTGCCTTATTTT-CTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGC
* * * *
3508903 ATCGATTCTCATAATAGTCTCCTTTCCTTTCAAGATTGGGAAACCAAAACACATTCCCTTCATTA
1 ATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACACATTCCCTTCATTA
* * * * *
3508968 GGATACATGACATTGA----ATGGTGTCGCAAGAAAAGCTTTCCTTTCCATCGTTTTTGATAGAA
65 GGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAA
* * * * ***
3509029 TCAAGGTTTGCCTCTCATATAAGACAAACATGA-ATACTCAAATAAATCCCCATTCTTTTCTT-G
130 TCAAAGTTTGTCTCTTATATAAGACAAACATTACA-ACTCATGCAAATCCCCATT-TTTT-TTGG
* * ** * * * *
3509092 ATTAGGCATCATAAACATAGCCTTCTGATTAGGATAGACGATATTGACG-TTTTAGTTAT-GCAA
192 ATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTT-GTT-TCGCAA
* **
3509155 GAATGG-GATTTTCCCACCAATTTTTGTAAAGTCTAA----GT---T----T--G--------TG
255 GAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATTG
*
3509198 ---C----------C-TCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC-TCCTTAGGA
320 ATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCTTCATTAGGA
* * * * *
3509248 TAAATGGTATTGATGATTTTCTTTTACATAGAAATCTTTTCTTTGCCCTATTTTCCTT-AAAATC
384 TAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTT-CTTGAAAATC
* * * * *
3509312 AAAGTTCTTCCCTTAAATAAGACACGCATCGATTCTCATAATAGTCTCCACTCCTTTCAAGATGG
448 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGG
*
3509377 GAAGCCAAAACACATTCCCTTCATTAGAATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGC
513 GAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGC
* *
3509442 TTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTATACAAG--AAACATTACTACTC
578 TTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATTACTACTC
3509505 ATGCAAATCCCCA-TTTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCA
643 ATGCAAATCCCCATTTTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCA
* * *
3509569 TATTGATGCTCTTGTTTCGCAAGAAAAGCTTTTTT-CCA-AAATTATTGTAAAGTCTAAGTTTGC
708 TATTGATGCTTTTGTTTCGCAAGAAATGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTGC
* * * *
3509632 ACCTCAAATGAGACAAACATTAATTCTAGTGATGATATTCATTCA-TTT-TGA--AAGCACTATA
773 GCCTCAAATGAGACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATA
*
3509693 AACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGGATGAAAATCTTTTCTTT
838 AACACATTCCCTTCATTAGGATAAATGATATTGATGA-TTTTTTTTGGATGGAAATCTTTTCTTT
*
3509758 GCCTTATTTTCTTGAAAATCGAAGTTCATCCCTTAAATAAGACAAGC
902 GCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGC
* *
3509805 ATTGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAG
1 ATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAG
** * * *
3509870 GGCACATGGCATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTTTCAACATTTTTGATAGAAT
66 GATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT
*
3509935 CAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTTTTTAGGATT
131 CAAAGTTTGTCTCTTATATAAGACAAACATTACAACTCATGCAAATCCCCATTTTTTTT-GGATT
* * * *
3510000 AGGCACCATAGACATAATCTTATCATTAGGATAAACCATATTGATGCTTTTGTTCCGCAAGACAT
195 AGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAAG
* * * *
3510065 GCTTTTTTCCCACAAATTATTGTAATGTCTAAGTTTGCGCCTCAAATGAGACAAACATTGATTCT
260 GCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATTGATTCT
* *
3510130 AGTGATGATCTTCATTCATTTTGTGATTAGGCACCACAAACACATTCCCTTCATTAGGATAAATG
325 AGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATG
* *
3510195 ATATTGATGATTTTTTTTTGGATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTA
390 ATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTC
* * *
3510260 ATCCCTTAAATAAAACAAGCACCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCA
455 ATCCCTTAAATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGGAAGCCA
*
3510325 AAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCACAAGAAAAGCTTTTCTT
520 AAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTT
* * *
3510390 TCCATCATTATTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAA
585 TCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCATGCAAA
*
3510455 TCCCCATTTTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATTTTGAT
650 TCCCCATTTTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGAT
* *
3510520 GCTTTTGTTTCGCAAGAAATGCTTTTTTCCCACAAATTATTGTAATGTCTAAGTTTGCGCCTCAA
715 GCTTTTGTTTCGCAAGAAATGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTGCGCCTCAA
3510585 ATGAGACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAT
780 ATGAGACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAT
*
3510650 TCCCTTCATTAGGATAAATGATATTGATG--TTTTTTTGGATGGAAATCTTTTCTTTGCTTTATT
845 TCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTGGATGGAAATCTTTTCTTTGCCTTATT
* *
3510713 TTCTTGAAAATCAAAGTTCATCCTTTAAATAAGTCAAGC
910 TTCTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGC
* * *
3510752 ATCGATTCCCGCAACAGTCTCCGTTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAG
1 ATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAG
* * *
3510817 GATACATGGCATTGATGCTTTGGTGTCTCCAGAAAAGCTTTTCTTTTCACCATTTTTGATAGAAT
66 GATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT
*
3510882 CAAAGTTTG-CTTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTTTTTAGGA-
131 CAAAGTTTGTC-TCTTATATAAGACAAACATTACAACTCATGCAAATCCCCATTTTTTTT-GGAT
3510945 TAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAA
194 TAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAA
* * *
3511010 GGCTTTTTTCCCAACAATTATTGTAAAGTCTTAGTTTGTGCCTCAAATGAGACAAACATTGATTC
259 GGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATTGATTC
*
3511075 TGGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAAT
324 TAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAAT
3511140 GATATTGATGATTTTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAG
389 GATATTGATGA--TTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAG
**
3511205 TTCATCCCTTAAATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATTAAGAA
452 TTCATCCCTTAAATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGA-TGGGAA
* * *
3511270 GCCAAAACACATTCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAAAAAAGCTTT
516 GCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTT
* * * * * * * *
3511335 TCTTTTCTCCGTTTTTGATAGAATCAAAGTTTATCTCTTATATAAGACAAACATGAATACGCATA
581 TCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCATG
* * * **
3511400 CAAATCCCCATTCTTTTCTT--GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATTAT
646 CAAATCCCCATT-TTTT-TTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCAT
* ** * ** * *
3511463 ATTGATGCTTTGGATTT-GCAAGAAATGCTTTTTTCCTGCCAATTTTTGTAGGGTCTAAGTTCGT
709 ATTGATGCTTTTG-TTTCGCAAGAAATGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTGC
* * * * * *
3511527 GCCTCAAATGAGGCAAACATGGATTCTAGTGAT-AACTTGATTCATTTTGTGATTAAGCACTAGA
773 GCCTCAAATGAGACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATA
* * * * * *
3511591 AAGACATTCTCC-TCATTAGGATAAATGATATTGATAATTTGCTTTTGCCA-AGAAATCTTATCT
838 AACACATTC-CCTTCATTAGGATAAATGATATTGATGATTT-TTTTTG-GATGGAAATCTTTTCT
* * * *
3511654 TTGCCTTATTTTCCTT-AAAATCAAAATTCGTTCCTTAAATAAGATAAGC
900 TTGCCTTATTTT-CTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGC
* * * *
3511703 ATCGATTCTCATAATAGTCTCCTTTCCTTTCAAGATTGGGAAACCAAAACACATTCCCTTCATTA
1 ATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACACATTCCCTTCATTA
* * * * ***
3511768 GGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTCCTGAT-GA-CA---ACCAT-GA
65 GGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCT-TTCCACCATTTTTGATAGA
* * * * ** * ** ** * *** *** *
3511827 A-CCAAGGTTG-C-C-TAAACAATGATCTTGAGA-TGGATTTC-T-AACAATAAACAGAATTATT
129 ATCAAAGTTTGTCTCTTATATAA-GA-C-AAACATTACAACTCATGCA-AATCCCCATTTTTTTT
* * * *** ** ** *** *** * * *
3511885 -GA-T--GCA--AGA-ACAGAA-ATTGAAAGAAGCAGA-AAAAAATAACAAAATGGAATAGATTA
190 GGATTAGGCACCATAGACATAATCTTCTCATTAG--GATAAACCAT-A-TTGATGCTTTTGTTTC
* * **** ** * * ** *
3511941 G--AGATGGAGG-ATGGCGCCACAATCACAA-GATTG-ATAAGCCAAAAGGAATGATCGCCAC-A
251 GCAAGA--AAGGCTTTTTTCC-C-A-C-CAATTTTTGTA-AAGTC-TAA-GTTTG-T-GCCTCAA
* ** *** * * * * * *
3512000 A-GAG----TC-TTGGCCTCT--TGATAAGATC--CAGAAAAATTGGCTCACTCAAGAACCTA-A
305 ATGAGACAAACATT-GATTCTAGTGAT--GATCTTCA-TTCATTTTG-TGA-TTAGGCA-CTATA
* * ** * *** * * * * **** * **
3512054 GAATCACACTCTCAC-ACAAAATGTGTTTTCTGCA-AAT-ATGAATGTCTGCCCCCTCCAAATCT
363 -AA-CACA-T-TCCCTTCATTA-G-GATAAATG-ATATTGATGATTTTTTTTTGCATGGAAATCT
* * * * * ** * *
3512116 GTTTAC-TAGAGCTTATATATGCCCTCATAAGCCATAGTTAACA-CAAACCCTAAGGGGCTTATT
421 -TTT-CTTTG-CCTTAT-T-T-TCTTGA-AAATCAAAGTT--CATC---CCTTAA-------A-T
* * * * * ** * * * *
3512179 ATGCTAACAAGCCCAACTCTTACTTAAACCCAAATAACAAGTTTTTA-TGCTAAATAAAGCCCAA
466 AAG---ACAAG--C-A-TC-GA-TT---CTC--ACAAC-AGTCTCCATTCCT--TTCAAG---AT
* * * * * * ** * * * * * *
3512243 AGCAAGTCACAAC-CAGTAGGCCCTTTATTACAAAATAACCCAAGTCCTAATTCAATCCATTGGA
511 GGGAAGCCAAAACACA-T--TCCCTTCATT--AGGAT-A--CATG-GC--ATT-GATACTTTGGT
* ** ** * * * * * * * * *
3512307 G-CCCATATCTTCCAAATATATGCAATT-AACTAGCTTGGGCTCTT-CTA-ACTC-CAGATTGGG
564 GTCGCA-A----GAAAAGCTTTTC-TTTCCACCA--TT----T-TTGATAGAATCAAAG-TT-TG
* * * * * * * ** *
3512367 TCTACTTTCAAATAGGCCAGCAACCATCTTCTCTAGGTCTTCCTTTATCCTC-TTTGCCTTTGCC
614 TCT-C-TT-ATATAAG--A-CAAACA--TT-ACTA-CTCATGC-AAATCCCCATTT---TTT---
* * * * * * ** ** * * * *** * *
3512431 CTCGTTATT-GG-TCC-TTGAAATCCTTCCAACGCCTTCAGGTCTTTGTCTTCA-ATGGA-CCTT
662 TTAG-GATTAGGCACCATAGACAT-AAT-CTTCTCATT-AGG--ATAAAC--CATATTGATGCTT
* ** * * * *
3512491 CCTTGGTTT-TC-A-TCAT--TTCCTTT-CCATC-GTTTTTGATAGAA-TC-AAGGTTTGC-CTC
719 --TT-GTTTCGCAAGAAATGCTT-TTTTCCCACCAATTATTG-TA-AAGTCTAA-GTTTGCGC-C
* * * * * ** *
3512546 TCATATAAGACAAACA-TGAATACTCA--AATAAATCCCCATTC-TTTTCTTGATTAGGCA-TCA
776 TCAAATGAGACAAACATTG-ATTCT-AGTGAT-GATCTTCATTCATTTT-GTGATTAGGCACT-A
** * * * ** * ****
3512606 T-AA-ACATAGCCTTCTGATTAGGATAGACGATATTGACG-TTTTAGTT--ATGCAAGAATGGGA
836 TAAACACATTCCCTTC--ATTAGGATAAATGATATTGATGATTTTTTTTGGATG-GA-AATCTTT
* ** * * * ** ** ** * *
3512666 T-TTTCCCACCAATTT-TTGTAAAGTCTAAGTTTGTGCCTCATTCATTTTGTGATTAGGC
897 TCTTTGCC-TTATTTTCTTG-AAAATCAAAGTTCAT-CC-C-TT-A-AATAAGA-CAAGC
* *** * * * ** * ** ** **
3512724 A-CTATAAAC---ACATTCTCC--TCC-TT-AGGAT--AAATGGTATTGATGATTTTCTTTTACA
1 ATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGATGGGAA-GCCA--AAACACATTCCCTT-CA
* * ** * ** *
3512779 -TA-GAAATCTTTTCTTTG-CCCTATT--T-TC-CTTAAAATCAAAG-TTCTTCCCTTAAATAAG
62 TTAGGATA-CATGGCATTGATGCT-TTGGTGTCGC--AAGA--AAAGCTT-TT--CTT---T---
* * * *** * *
3512836 ACACGCATCGATTCTCAT--AAT---AGTCTCCACTCCTTTCAAGATGGGAAGCCAAAACACATT
112 CCAC-CAT---TTTTGATAGAATCAAAGT-TTGTCT-C-TT--ATAT---AAG--ACAA-ACATT
* * ** ** * ** * **
3512896 -C-CCTTCAT-TAGAATACATGGCATTGATACTTTGG-TGT-CGCAAGA-AAAGC-TTTTCTTTC
162 ACAAC-TCATGCA-AAT-C--CCCATT--TTTTTTGGAT-TAGGCACCATAGA-CATAATC-TT-
* ** * * * * * *
3512954 CACCATTTTTGATAGAATCAAAGTT--TGCCTCTTATAT---AAGAAA--CATTACTACTCATGC
216 C-TCA-TTAGGATA-AACCATA-TTGATG-CTTTTGTTTCGCAAGAAAGGC-TT--T--T--TTC
** * * * ** ** * ** * *
3513012 AAATCCCCATTTTTTTAGGATTAGGCACCATAGACATAAT-CTTCTCATTAGGATAAACCATATT
269 CCA--CCAATTTTTGTA--A--A-G--TC-TA-AGTTTGTGCCTCAAATGA-GACAAA-C--ATT
* * * ** *
3513076 GATGCTCTTGTTTCGCAAGAAAAGCTTTTTTCCAAAATTATTGTAAAGTCTAAGTTTGCACCTCA
319 GAT--TCTAG--T-G-ATG---ATCTTCATT-C---ATT-TTGT-GA-T-T-AG---GCA-CT--
* ** * * * **** **
3513141 AATGAGACAAACATT-AATTC--TA-G-T-GATGATATTCATTCA-TTTTGAAAGCACTATAAAC
360 -AT-A-A-ACACATTCCCTTCATTAGGATAAATGATATTGA-TGATTTTTTTTTGCA-TGGAAA-
* * * * * ** *** * ** * * *** ** * *** *
3513199 ACATTCCCTT-CATTAGGATAAATG-ATATTGATGATT-TTTTTTTGGATGAAAATCTTTTCTTT
418 TCTTTTCTTTGCCTTA-TTTTCTTGAAAATCAAAG-TTCATCCCTTAAAT-AAGA-C-AAGC-AT
* * * * * * * *
3513261 GCCTTATTTTCTTGAAAATCGAAGT-T-CA-TCCCTT-AA-AT---AAGAC-AAGCATTGATTCT
477 --C-GA--TTC-TCACAA-C--AGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACA--CATTCC
* ** ** * ** * * ** ** * *
3513317 C-GCAACAGTCTCCATTCCTTTCA-A-GATGG-GAAGCCAA-AACA-CATTCCCTTCATTAGGGC
531 CTTCATTAGGATACATGGCATTGATACTTTGGTGTCG-CAAGAAAAGC-TT---TTC-TT---TC
* * ** * *
3513376 ACATGGCATTGATGCTTTGGT-GTCTCAAGAAAAGCTTT-TCTTTTCAACATTTTTGATAGAATC
587 -CA--CCA-T--T--TTTGATAG----AATCAAAG-TTTGTCTCTT----A--TAT-A-AG-A-C
** * * * ***** **** **** **
3513439 AAAGTTTGTCT-CTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTTTTTAGGATT
629 AAACATT-ACTAC-T-CAT--G-C-AA-A-T-C--CCCATTTTTTTTAGGA--TTAGGCACCA-T
* ** * *
3513503 AGGCACCATAGACATAATCTTATCATTAGGATAAACCATATTGATGCTTTTGTTCCGCAAGACAT
679 AGACATAAT---C-T--TC---TCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAAT
* *
3513568 GCTTTTTTCCCACAAATTATTGTAATGTCTAAGTTTGCGCCTCAAATGAGACAAACATTGATTCT
735 GCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAACATTGATTCT
* *
3513633 AGTGATGATCTTCATTCATTTTGTGATTAGGCACCACAAACACATTCCCTTCATTAGGATAAATG
800 AGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATG
*
3513698 ATATTGATGATTTTTTTTTGGATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTA
865 ATATTGATGA-TTTTTTTTGGATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTC
*
3513763 ATCCCTTAAATAAAACAAGC
929 ATCCCTTAAATAAGACAAGC
* *
3513783 ACCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAG
1 ATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAG
* * * *
3513848 GATACATGGCATTGATACTTTGGTGTCACAAGAAAAGCTTTTCTTTCCATCATTATTGATAGAAT
66 GATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT
* *
3513913 CAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTTTTTAGGATT
131 CAAAGTTTGTCTCTTATATAAGACAAACATTACAACTCATGCAAATCCCCATTTTTTTT-GGATT
* *
3513978 AGGCACCATAGACATAATCTTCTCATTAGGATAAACCATTTTGATGCTTTTGTTTCGCAAGAAAT
195 AGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAAG
* * * *
3514043 GCTTTTTTCCCACAAATTATTGTAATGTCTAAGTTTGCGCCTCAAATGAGACAAACATTGATTCT
260 GCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATTGATTCT
3514108 AGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATG
325 AGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATG
* *
3514173 ATATTGATG---TTTTTTTGGATGGAAATCTTTTCTTTGCTTTATTTTCTTGAAAATCAAAGTTC
390 ATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTC
* * * *
3514235 ATCCCTTAAATAAGTCAAGCATCGATTCCCGCAACAGTCTCCGTTCCTTTCAAGATGGGAAGCCA
455 ATCCCTTAAATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGGAAGCCA
* * *
3514300 AAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCTCCAGAAAAGCTTTTCTT
520 AAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTT
*
3514365 TTCACCATTTTTGATAGAATCAAAGTTTG-CTTCTTATATAAGACAAACATTACTACTCATGCAA
585 TCCACCATTTTTGATAGAATCAAAGTTTGTC-TCTTATATAAGACAAACATTACTACTCATGCAA
3514429 ATCCCCATTTTTTTTAGGA-TAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGA
649 ATCCCCATTTTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGA
* * * *
3514493 TGCTTTTGTTTCGCAAGAAAGGCTTTTTTCCCAACAATTATTGTAAAGTCTTAGTTTGTGCCTCA
714 TGCTTTTGTTTCGCAAGAAATGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTGCGCCTCA
*
3514558 AATGAGACAAACATTGATTCTGGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACA
779 AATGAGACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACA
*
3514623 TTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTTTGCATGGAAATCTTTTCTTTGCCT
844 TTCCCTTCATTAGGATAAATGATATTGATGA---TTTTTTTTGGATGGAAATCTTTTCTTTGCCT
3514688 TATTTTCTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGC
906 TATTTTCTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGC
** ** *
3514731 ATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATTAAGAAGCCAAAACACATTCTCTTCATTA
1 ATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACACATTCCCTTCATTA
* * * *
3514796 GGATACATGGCATTGATGCTTTGGTGTCGCAAAAAAAGCTTTTCTTTTCTCCGTTTTTGATAGAA
65 GGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAA
* * * *
3514861 TCAAAGTTTATCTCTTATATAAGACAAACATGA-ATACGCATACAAATCCCCATTCTTTTCTT-G
130 TCAAAGTTTGTCTCTTATATAAGACAAACATTACA-ACTCATGCAAATCCCCATT-TTTT-TTGG
* * * ** *
3514924 ATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATTATATTGATGCTTTGGATTT-GCAAG
192 ATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTG-TTTCGCAAG
** ** * * *
3514988 AAAGGCTTTTTTCCTGCCAATTTTTGTAGGGTCTAAGTTCGTGCCTCAAATGAGGCAAACATGGA
256 AAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATTGA
* * * * *
3515053 TTCTAGTGAT-AACTTGATTCATTTTGTGATTAAGCACTAGAAAGACATTCTCC-TCATTAGGAT
321 TTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCTTCATTAGGAT
* ** * *
3515116 AAATGATATTGATAATTTGCTTTTGCCA-AGAAATCTTATCTTTGCCTTATTTTCCTT-AAAATC
385 AAATGATATTGATGATTTTTTTTTG-CATGGAAATCTTTTCTTTGCCTTATTTT-CTTGAAAATC
* * * * * * *
3515179 AAAATTCGTTCCTTAAATAAGATAAGCATCGATTCTCATAATAGTCTCCTTTCCTTTCAAGATTG
448 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGA-TG
* * *
3515244 GGAAACCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAG
512 GGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAG
* * * * * * * *
3515309 CTTTCCTTTCCATCGTTTTTGATAGAATCAAGGTTTGCCTCTCATATAAGACAAACATGAATACT
577 CTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATTACTACT
*** * * ** * *
3515374 CAAATAAATCCCCATTCTTTTCTT--GATTAGGCATCATAAACATAGCCTTCTGATTAGGATAGA
642 CATGCAAATCCCCATT-TTTT-TTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAA
* * *** *
3515437 CGATATTGACG-TTTTAGTTAT-GCAAG-AATGGGATTTTCCCACCAATTTTTGTAAAGTCTAAG
705 CCATATTGATGCTTTT-GTT-TCGCAAGAAATGCTTTTTTCCCACCAATTATTGTAAAGTCTAAG
3515499 --T-----T----T--G--------TG---C----------C-TCATTCATTTTGTGATTAGGCA
768 TTTGCGCCTCAAATGAGACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCA
* * ** *
3515529 CTATAAACACATTCTCC-TCCTTAGGATAAATGGTATTGATGATTTTCTTTTACATAGAAATCTT
833 CTATAAACACATTC-CCTTCATTAGGATAAATGATATTGATGATTTT-TTTTGGATGGAAATCTT
* * *
3515593 TTCTTTGCCCTATTTTCCTT-AAAATCAAAGTTCTTCCCTTAAATAAGACACGC
896 TTCTTTGCCTTATTTT-CTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGC
* * *
3515646 ATCGATTCTCATAATAGTCTCCACTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAG
1 ATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAG
* *
3515711 AATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT
66 GATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT
* * *
3515776 CAAAGTTTGCCTCTTATATAAG--AAACATTACTACTCATGCAAATCCCCATTTTTTTAGGATTA
131 CAAAGTTTGTCTCTTATATAAGACAAACATTACAACTCATGCAAATCCCCATTTTTTTTGGATTA
* *
3515839 GGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTCTTGTTTCGCAAGAAAAG
196 GGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAAGG
* * ** *
3515904 CTTTTTT-CCA-AAATTATTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAAACATTAATTCTA
261 CTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATTGATTCTA
* *
3515967 GTGATGATATTCATTCA-TTT-TGA--AAGCACTATAAACACATTCCCTTCATTAGGATAAATGA
326 GTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGA
* * *
3516028 TATTGATGATTTTTTTTTGGATGAAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCGAAGTTCA
391 TATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCA
* *
3516093 TCCCTTAAATAAGACAAGCATTGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAA
456 TCCCTTAAATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAA
** * *
3516158 AACACATTCCCTTCATTAGGGCACATGGCATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTT
521 AACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTT
* *
3516223 TCAACATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCATGCAAAT
586 CCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCATGCAAAT
*
3516288 CCCCATTTTTTTTAGGATTAGGCACCATAGACATAATCTTATCATTAGGATAAACCATATTGATG
651 CCCCATTTTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATG
* * * *
3516353 CTTTTGTTCCGCAAGACATGCTTTTTTCCCACAAATTATTGTAATGTCTAAGTTTGCGCCTCAAA
716 CTTTTGTTTCGCAAGAAATGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTGCGCCTCAAA
* *
3516418 TGAGACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACCACAAACACATT
781 TGAGACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
3516483 CCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGGATGGAAATCTTTTCTTTGCCTTATT
846 CCCTTCATTAGGATAAATGATATTGATGA-TTTTTTTTGGATGGAAATCTTTTCTTTGCCTTATT
* *
3516548 TTCTTGAAAATCAAAGTTAATCCCTTAAATAAAACAAGC
910 TTCTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGC
* *
3516587 ACCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAG
1 ATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAG
* * * *
3516652 GATACATGGCATTGATACTTTGGTGTCACAAGAAAAGCTTTTCTTTCCATCATTATTGATAGAAT
66 GATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT
* *
3516717 CAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTTTTTAGGATT
131 CAAAGTTTGTCTCTTATATAAGACAAACATTACAACTCATGCAAATCCCCATTTTTTTT-GGATT
* *
3516782 AGGCACCATAGACATAATCTTCTCATTAGGATAAACCATTTTGATGCTTTTGTTTCGCAAGAAAT
195 AGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAAG
* * * *
3516847 GCTTTTTTCCCACAAATTATTGTAATGTCTAAGTTTGCGCCTCAAATGAGACAAACATTGATTCT
260 GCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATTGATTCT
3516912 AGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATG
325 AGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATG
* *
3516977 ATATTGATG---TTTTTTTGGATGGAAATCTTTTCTTTGCTTTATTTTCTTGAAAATCAAAGTTC
390 ATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTC
* * * *
3517039 ATCCCTTAAATAAGTCAAGCATCGATTCCCGCAACAGTCTCCGTTCCTTTCAAGATGGGAAGCCA
455 ATCCCTTAAATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGGAAGCCA
* * *
3517104 AAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCTCCAGAAAAGCTTTTCTT
520 AAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTT
*
3517169 TTCACCATTTTTGATAGAATCAAAGTTTG-CTTCTTATATAAGACAAACATTACTACTCATGCAA
585 TCCACCATTTTTGATAGAATCAAAGTTTGTC-TCTTATATAAGACAAACATTACTACTCATGCAA
3517233 ATCCCCATTTTTTTTAGGA-TAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGA
649 ATCCCCATTTTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGA
* * * *
3517297 TGCTTTTGTTTCGCAAGAAAGGCTTTTTTCCCAACAATTATTGTAAAGTCTTAGTTTGTGCCTCA
714 TGCTTTTGTTTCGCAAGAAATGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTGCGCCTCA
*
3517362 AATGAGACAAACATTGATTCTGGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACA
779 AATGAGACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACA
*
3517427 TTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTTTGCATGGAAATCTTTTCTTTGCCT
844 TTCCCTTCATTAGGATAAATGATATTGATGA---TTTTTTTTGGATGGAAATCTTTTCTTTGCCT
3517492 TATTTTCTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGC
906 TATTTTCTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGC
** ** *
3517535 ATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATTAAGAAGCCAAAACACATTCTCTTCATTA
1 ATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACACATTCCCTTCATTA
* * * *
3517600 GGATACATGGCATTGATGCTTTGGTGTCGCAAAAAAAGCTTTTCTTTTCTCCGTTTTTGATAGAA
65 GGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAA
* * * *
3517665 TCAAAGTTTATCTCTTATATAAGACAAACATGA-ATACGCATACAAATCCCCATTCTTTTCTT-G
130 TCAAAGTTTGTCTCTTATATAAGACAAACATTACA-ACTCATGCAAATCCCCATT-TTTT-TTGG
* * * ** *
3517728 ATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATTATATTGATGCTTTGGATTT-GCAAG
192 ATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTG-TTTCGCAAG
** ** * * *
3517792 AAAGGCTTTTTTCCTGCCAATTTTTGTAGGGTCTAAGTTCGTGCCTCAAATGAGGCAAACATGGA
256 AAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATTGA
* * * * *
3517857 TTCTAGTGAT-AACTTGATTCATTTTGTGATTAAGCACTAGAAAGACATTCTCC-TCATTAGGAT
321 TTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCTTCATTAGGAT
* ** * *
3517920 AAATGATATTGATAATTTGCTTTTGCCA-AGAAATCTTATCTTTGCCTTATTTTCCTT-AAAATC
385 AAATGATATTGATGATTTTTTTTTG-CATGGAAATCTTTTCTTTGCCTTATTTT-CTTGAAAATC
* * * * * * * *
3517983 AAAATTCGTTCCTTAAATAAGATAAGCATCGATTCTCATAATAGTATCCTTTCCTTTCAAGATTG
448 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGA-TG
* * *
3518048 GGAAACCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAG
512 GGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAG
* * * * * * * *
3518113 CTTTCCTTTCCATCGTTTTTGATAGAATCAAGGTTTGCCTCTCATATAAGACAAACATGAATACT
577 CTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATTACTACT
*** * * ** * *
3518178 CAAATAAATCCCCATTCTTTTCTT--GATTAGGCATCATAAACATAGCCTTCTGATTAGGATAGA
642 CATGCAAATCCCCATT-TTTT-TTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAA
* * *** *
3518241 CGATATTGACG-TTTTAGTTAT-GCAAG-AATGGGATTTTCCCACCAATTTTTGTAAAGTCTAAG
705 CCATATTGATGCTTTT-GTT-TCGCAAGAAATGCTTTTTTCCCACCAATTATTGTAAAGTCTAAG
3518303 --T-----T----T--G--------TG---C----------C-TCATTCATTTTGTGATTAGGCA
768 TTTGCGCCTCAAATGAGACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCA
* * ** *
3518333 CTATAAACACATTCTCC-TCCTTAGGATAAATGGTATTGATGATTTTCTTTTACATAGAAATCTT
833 CTATAAACACATTC-CCTTCATTAGGATAAATGATATTGATGATTTT-TTTTGGATGGAAATCTT
* * *
3518397 TTCTTTGCCCTATTTTCCTT-AAAATCAAAGTTCTTCCCTTAAATAAGACACGC
896 TTCTTTGCCTTATTTT-CTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGC
* * *
3518450 ATCGATTCTCATAATAGTCTCCACTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAG
1 ATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAG
* *
3518515 AATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT
66 GATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT
* * *
3518580 CAAAGTTTGCCTCTTATATAAG--AAACATTACTACTCATGCAAATCCCCATTTTTTTAGGATTA
131 CAAAGTTTGTCTCTTATATAAGACAAACATTACAACTCATGCAAATCCCCATTTTTTTTGGATTA
* *
3518643 GGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTCTTGTTTCGCAAGAAAAG
196 GGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAAGG
* * ** *
3518708 CTTTTTT-CCA-AAATTATTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAAACATTAATTCTA
261 CTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATTGATTCTA
* *
3518771 GTGATGATATTCATTCA-TTT-TGA--AAGCACTATAAACACATTCCCTTCATTAGGATAAATGA
326 GTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGA
* * *
3518832 TATTGATGATTTTTTTTTGGATGAAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCGAAGTTCA
391 TATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCA
* *
3518897 TCCCTTAAATAAGACAAGCATTGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAA
456 TCCCTTAAATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAA
** * *
3518962 AACACATTCCCTTCATTAGGGCACATGGCATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTT
521 AACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTT
* *
3519027 TCAACATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCATGCAAAT
586 CCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCATGCAAAT
*
3519092 CCCCATTTTTTTTAGGATTAGGCACCATAGACATAATCTTATCATTAGGATAAACCATATTGATG
651 CCCCATTTTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATG
* * * *
3519157 CTTTTGTTCCGCAAGACATGCTTTTTTCCCACAAATTATTGTAATGTCTAAGTTTGCGCCTCAAA
716 CTTTTGTTTCGCAAGAAATGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTGCGCCTCAAA
* *
3519222 TGAGACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACCACAAACACATT
781 TGAGACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
3519287 CCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGGATGGAAATCTTTTCTTTGCCTTATT
846 CCCTTCATTAGGATAAATGATATTGATGA-TTTTTTTTGGATGGAAATCTTTTCTTTGCCTTATT
* *
3519352 TTCTTGAAAATCAAAGTTAATCCCTTAAATAAAACAAGC
910 TTCTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGC
* *
3519391 ACCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAG
1 ATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAG
* * * *
3519456 GATACATGGCATTGATACTTTGGTGTCACAAGAAAAGCTTTTCTTTCCATCATTATTGATAGAAT
66 GATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT
* *
3519521 CAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTTTTTAGGATT
131 CAAAGTTTGTCTCTTATATAAGACAAACATTACAACTCATGCAAATCCCCATTTTTTTT-GGATT
* *
3519586 AGGCACCATAGACATAATCTTCTCATTAGGATAAACCATTTTGATGCTTTTGTTTCGCAAGAAAT
195 AGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAAG
* * * *
3519651 GCTTTTTTCCCACAAATTATTGTAATGTCTAAGTTTGCGCCTCAAATGAGACAAACATTGATTCT
260 GCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATTGATTCT
3519716 AGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATG
325 AGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATG
* *
3519781 ATATTGATG---TTTTTTTGGATGGAAATCTTTTCTTTGCTTTATTTTCTTGAAAATCAAAGTTC
390 ATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTC
* * * *
3519843 ATCCCTTAAATAAGTCAAGCATCGATTCCCGCAACAGTCTCCGTTCCTTTCAAGATGGGAAGCCA
455 ATCCCTTAAATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGGAAGCCA
* * *
3519908 AAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCTCCAGAAAAGCTTTTCTT
520 AAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTT
*
3519973 TTCACCATTTTTGATAGAATCAAAGTTTG-CTTCTTATATAAGACAAACATTACTACTCATGCAA
585 TCCACCATTTTTGATAGAATCAAAGTTTGTC-TCTTATATAAGACAAACATTACTACTCATGCAA
3520037 ATCCCCATTTTTTTTAGGA-TAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGA
649 ATCCCCATTTTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGA
* * * *
3520101 TGCTTTTGTTTCGCAAGAAAGGCTTTTTTCCCAACAATTATTGTAAAGTCTTAGTTTGTGCCTCA
714 TGCTTTTGTTTCGCAAGAAATGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTGCGCCTCA
*
3520166 AATGAGACAAACATTGATTCTGGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACA
779 AATGAGACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACA
*
3520231 TTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTTTGCATGGAAATCTTTTCTTTGCCT
844 TTCCCTTCATTAGGATAAATGATATTGATGA---TTTTTTTTGGATGGAAATCTTTTCTTTGCCT
3520296 TATTTTCTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGC
906 TATTTTCTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGC
** ** *
3520339 ATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATTAAGAAGCCAAAACACATTCTCTTCATTA
1 ATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACACATTCCCTTCATTA
* * * *
3520404 GGATACATGGCATTGATGCTTTGGTGTCGCAAAAAAAGCTTTTCTTTTCTCCGTTTTTGATAGAA
65 GGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAA
* * * *
3520469 TCAAAGTTTATCTCTTATATAAGACAAACATGA-ATACGCATACAAATCCCCATTCTTTTCTT-G
130 TCAAAGTTTGTCTCTTATATAAGACAAACATTACA-ACTCATGCAAATCCCCATT-TTTT-TTGG
* * * ** *
3520532 ATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATTATATTGATGCTTTGGATTT-GCAAG
192 ATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTG-TTTCGCAAG
** ** * * *
3520596 AAAGGCTTTTTTCCTGCCAATTTTTGTAGGGTCTAAGTTCGTGCCTCAAATGAGGCAAACATGGA
256 AAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATTGA
* * * * *
3520661 TTCTAGTGAT-AACTTGATTCATTTTGTGATTAAGCACTAGAAAGACATTCTCC-TCATTAGGAT
321 TTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCTTCATTAGGAT
* ** * *
3520724 AAATGATATTGATAATTTGCTTTTGCCA-AGAAATCTTATCTTTGCCTTATTTTCCTT-AAAATC
385 AAATGATATTGATGATTTTTTTTTG-CATGGAAATCTTTTCTTTGCCTTATTTT-CTTGAAAATC
* * * * * * * *
3520787 AAAATTCGTTCCTTAAATAAGATAAGCATCGATTCTCATAATAGTATCCTTTCCTTTCAAGATTG
448 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGA-TG
* * *
3520852 GGAAACCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAG
512 GGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAG
* * * * * * * *
3520917 CTTTCCTTTCCATCGTTTTTGATAGAATCAAGGTTTGCCTCTCATATAAGACAAACATGAATACT
577 CTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATTACTACT
*** * * ** * *
3520982 CAAATAAATCCCCATTCTTTTCTT--GATTAGGCATCATAAACATAGCCTTCTGATTAGGATAGA
642 CATGCAAATCCCCATT-TTTT-TTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAA
* * *** *
3521045 CGATATTGACG-TTTTAGTTAT-GCAAG-AATGGGATTTTCCCACCAATTTTTGTAAAGTCTAAG
705 CCATATTGATGCTTTT-GTT-TCGCAAGAAATGCTTTTTTCCCACCAATTATTGTAAAGTCTAAG
3521107 --T-----T----T--G--------TG---C----------C-TCATTCATTTTGTGATTAGGCA
768 TTTGCGCCTCAAATGAGACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCA
* * ** *
3521137 CTATAAACACATTCTCC-TCCTTAGGATAAATGGTATTGATGATTTTCTTTTACATAGAAATCTT
833 CTATAAACACATTC-CCTTCATTAGGATAAATGATATTGATGATTTT-TTTTGGATGGAAATCTT
* * *
3521201 TTCTTTGCCCTATTTTCCTT-AAAATCAAAGTTCTTCCCTTAAATAAGACACGC
896 TTCTTTGCCTTATTTT-CTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGC
* * *
3521254 ATCGATTCTCATAATAGTCTCCACTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAG
1 ATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAG
* *
3521319 AATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT
66 GATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT
* * *
3521384 CAAAGTTTGCCTCTTATATAAG--AAACATTACTACTCATGCAAATCCCCATTTTTTTAGGATTA
131 CAAAGTTTGTCTCTTATATAAGACAAACATTACAACTCATGCAAATCCCCATTTTTTTTGGATTA
* *
3521447 GGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTCTTGTTTCGCAAGAAAAG
196 GGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAAGG
* * ** *
3521512 CTTTTTT-CCA-AAATTATTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAAACATTAATTCTA
261 CTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATTGATTCTA
* *
3521575 GTGATGATATTCATTCA-TTT-TGA--AAGCACTATAAACACATTCCCTTCATTAGGATAAATGA
326 GTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGA
* * *
3521636 TATTGATGATTTTTTTTTGGATGAAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCGAAGTTCA
391 TATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCA
* *
3521701 TCCCTTAAATAAGACAAGCATTGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAA
456 TCCCTTAAATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAA
** * *
3521766 AACACATTCCCTTCATTAGGGCACATGGCATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTT
521 AACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTT
* *
3521831 TCAACATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCATGCAAAT
586 CCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCATGCAAAT
*
3521896 CCCCATTTTTTTTAGGATTAGGCACCATAGACATAATCTTATCATTAGGATAAACCATATTGATG
651 CCCCATTTTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATG
* * * *
3521961 CTTTTGTTCCGCAAGACATGCTTTTTTCCCACAAATTATTGTAATGTCTAAGTTTGCGCCTCAAA
716 CTTTTGTTTCGCAAGAAATGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTGCGCCTCAAA
* *
3522026 TGAGACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACCACAAACACATT
781 TGAGACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
3522091 CCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGGATGGAAATCTTTTCTTTGCCTTATT
846 CCCTTCATTAGGATAAATGATATTGATGA-TTTTTTTTGGATGGAAATCTTTTCTTTGCCTTATT
* *
3522156 TTCTTGAAAATCAAAGTTAATCCCTTAAATAAAACAAGC
910 TTCTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGC
* *
3522195 ACCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAG
1 ATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAG
* * * *
3522260 GATACATGGCATTGATACTTTGGTGTCACAAGAAAAGCTTTTCTTTCCATCATTATTGATAGAAT
66 GATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT
* *
3522325 CAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTTTTTAGGATT
131 CAAAGTTTGTCTCTTATATAAGACAAACATTACAACTCATGCAAATCCCCATTTTTTTT-GGATT
* *
3522390 AGGCACCATAGACATAATCTTCTCATTAGGATAAACCATTTTGATGCTTTTGTTTCGCAAGAAAT
195 AGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAAG
* * * *
3522455 GCTTTTTTCCCACAAATTATTGTAATGTCTAAGTTTGCGCCTCAAATGAGACAAACATTGATTCT
260 GCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATTGATTCT
3522520 AGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATG
325 AGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATG
* *
3522585 ATATTGATG---TTTTTTTGGATGGAAATCTTTTCTTTGCTTTATTTTCTTGAAAATCAAAGTTC
390 ATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTC
* * * *
3522647 ATCCCTTAAATAAGTCAAGCATCGATTCCCGCAACAGTCTCCGTTCCTTTCAAGATGGGAAGCCA
455 ATCCCTTAAATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGGAAGCCA
* * *
3522712 AAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCTCCAGAAAAGCTTTTCTT
520 AAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTT
*
3522777 TTCACCATTTTTGATAGAATCAAAGTTTG-CTTCTTATATAAGACAAACATTACTACTCATGCAA
585 TCCACCATTTTTGATAGAATCAAAGTTTGTC-TCTTATATAAGACAAACATTACTACTCATGCAA
3522841 ATCCCCATTTTTTTTAGGA-TAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGA
649 ATCCCCATTTTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGA
* * * *
3522905 TGCTTTTGTTTCGCAAGAAAGGCTTTTTTCCCAACAATTATTGTAAAGTCTTAGTTTGTGCCTCA
714 TGCTTTTGTTTCGCAAGAAATGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTGCGCCTCA
*
3522970 AATGAGACAAACATTGATTCTGGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACA
779 AATGAGACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACA
*
3523035 TTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTTTGCATGGAAATCTTTTCTTTGCCT
844 TTCCCTTCATTAGGATAAATGATATTGATGA---TTTTTTTTGGATGGAAATCTTTTCTTTGCCT
* * *
3523100 TATTTTCTTGAAAATCAAAATTCGTTCCTTAAATAAGACAAGC
906 TATTTTCTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGC
* * * *
3523143 ATCGATTCTCATAATAGTCTCCTTTCCTTTCAAGATTGGGAAACCAAAACACATTCCCTTCATTA
1 ATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACACATTCCCTTCATTA
* * * *
3523208 GGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTCCTTTCCATCGTTTTTGATAGAA
65 GGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAA
* * * * ***
3523273 TCAAGGTTTGCCTCTCATATAAGACAAACATGA-ATACTCAAATAAATCCCCATTCTTTTCTT-G
130 TCAAAGTTTGTCTCTTATATAAGACAAACATTACA-ACTCATGCAAATCCCCATT-TTTT-TTGG
* * ** * * * *
3523336 ATTAGGCATCATAAACATAGCCTTCTGATTAGGATAGACGATATTGACG-TTTTAGTTAT-GCAA
192 ATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTT-GTT-TCGCAA
* **
3523399 GAATGG-GATTTTCCCACCAATTTTTGTAAAGTCTAA----GT---T----T--G--------TG
255 GAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATTG
*
3523442 ---C----------C-TCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC-TCCTTAGGA
320 ATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCTTCATTAGGA
* * * * *
3523492 TAAATGGTATTGATGATTTTCTTTTACATAGAAATCTTTTCTTTGCCCTATTTTCCTT-AAAATC
384 TAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTT-CTTGAAAATC
* * * * *
3523556 AAAGTTCTTCCCTTAAATAAGACACGCATCGATTCTCATAATAGTCTCCACTCCTTTCAAGATGG
448 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGG
*
3523621 GAAGCCAAAACACATTCCCTTCATTAGAATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGC
513 GAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGC
*
3523686 TTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTATATAAG--AAACATTACTACTC
578 TTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATTACTACTC
3523749 ATGCAAATCCCCA-TTTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCA
643 ATGCAAATCCCCATTTTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCA
* * *
3523813 TATTGATGCTCTTGTTTCGCAAGAAAAGCTTTTTT-CCA-AAATTATTGTAAAGTCTAAGTTTGC
708 TATTGATGCTTTTGTTTCGCAAGAAATGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTGC
* * * *
3523876 ACCTCAAATGAGACAAACATTAATTCTAGTGATGATATTCATTCA-TTT-TGA--AAGCACTATA
773 GCCTCAAATGAGACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATA
*
3523937 AACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGGATGAAAATCTTTTCTTT
838 AACACATTCCCTTCATTAGGATAAATGATATTGATGA-TTTTTTTTGGATGGAAATCTTTTCTTT
*
3524002 GCCTTATTTTCTTGAAAATCGAAGTTCATCCCTTAAATAAGACAAGC
902 GCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGC
* *
3524049 ATTGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAG
1 ATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAG
** * * *
3524114 GGCACATGGCATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTTTCAACATTTTTGATAGAAT
66 GATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT
*
3524179 CAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTTTTTAGGATT
131 CAAAGTTTGTCTCTTATATAAGACAAACATTACAACTCATGCAAATCCCCATTTTTTTT-GGATT
* * * *
3524244 AGGCACCATAGACATAATCTTATCATTAGGATAAACCATATTGATGCTTTTGTTCCGCAAGACAT
195 AGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAAG
* * * *
3524309 GCTTTTTTCCCACAAATTATTGTAATGTCTAAGTTTGCGCCTCAAATGAGACAAACATTGATTCT
260 GCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATTGATTCT
* *
3524374 AGTGATGATCTTCATTCATTTTGTGATTAGGCACCACAAACACATTCCCTTCATTAGGATAAATG
325 AGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATG
* *
3524439 ATATTGATGATTTTTTTTTGGATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTA
390 ATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTC
* * *
3524504 ATCCCTTAAATAAAACAAGCACCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCA
455 ATCCCTTAAATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGGAAGCCA
*
3524569 AAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCACAAGAAAAGCTTTTCTT
520 AAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTT
* * *
3524634 TCCATCATTATTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAA
585 TCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCATGCAAA
*
3524699 TCCCCATTTTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATTTTGAT
650 TCCCCATTTTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGAT
* * *
3524764 GCTTTTGTTTCGCAAGAAATGCTTTTTTCCCAACAATTATTGTAAAGTCTTAGTTTGTGCCTCAA
715 GCTTTTGTTTCGCAAGAAATGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTGCGCCTCAA
*
3524829 ATGAGACAAACATTGATTCTGGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAT
780 ATGAGACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAT
*
3524894 TCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTTTGCATGGAAATCTTTTCTTTGCCTT
845 TCCCTTCATTAGGATAAATGATATTGATGA---TTTTTTTTGGATGGAAATCTTTTCTTTGCCTT
3524959 ATTTTCTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGC
907 ATTTTCTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGC
** ** *
3525001 ATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATTAAGAAGCCAAAACACATTCTCTTCATTA
1 ATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACACATTCCCTTCATTA
* * * *
3525066 GGATACATGGCATTGATGCTTTGGTGTCGCAAAAAAAGCTTTTCTTTTCTCCGTTTTTGATAGAA
65 GGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAA
* * * *
3525131 TCAAAGTTTATCTCTTATATAAGACAAACATGA-ATACGCATACAAATCCCCATTCTTTTCTT-G
130 TCAAAGTTTGTCTCTTATATAAGACAAACATTACA-ACTCATGCAAATCCCCATT-TTTT-TTGG
* * * ** *
3525194 ATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATTATATTGATGCTTTGGATTT-GCAAG
192 ATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTG-TTTCGCAAG
* ** ** * * *
3525258 AAATGCTTTTTTCCTGCCAATTTTTGTAGGGTCTAAGTTCGTGCCTCAAATGAGGCAAACATGGA
256 AAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATTGA
* * * * *
3525323 TTCTAGTGAT-AACTTGATTCATTTTGTGATTAAGCACTAGAAAGACATTCTCC-TCATTAGGAT
321 TTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCTTCATTAGGAT
* ** * **
3525386 AAATGATATTGATAATTTGCTTTTGCCA-AGAAATCTAATCTTTGCCTTATTTTCCTT-AAAATC
385 AAATGATATTGATGATTTTTTTTTG-CATGGAAATCTTTTCTTTGCCTTATTTT-CTTGAAAATC
* * * * * * *
3525449 AAAATTCGTTCCTTAAATAAGATAAGCATCGATTCTCATAATAGTCTCCTTTCCTTTCAAGATTG
448 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGA-TG
* * *
3525514 GGAAACCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAG
512 GGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAG
* * * * * * * *
3525579 CTTTCCTTTCCATCGTTTTTGATAGAATCAAGGTTTGCCTCTCATATAAGACAAACATGAATACT
577 CTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATTACTACT
*** * * ** * *
3525644 CAAATAAATCCCCATTCTTTTCTT--GATTAGGCATCATAAACATAGCCTTCTGATTAGGATAGA
642 CATGCAAATCCCCATT-TTTT-TTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAA
* * *** *
3525707 CGATATTGACG-TTTTAGTTAT-GCAAG-AATGGGATTTTCCCACCAATTTTTGTAAAGTCTAAG
705 CCATATTGATGCTTTT-GTT-TCGCAAGAAATGCTTTTTTCCCACCAATTATTGTAAAGTCTAAG
3525769 --T-----T----T--G--------TG---C----------C-TCATTCATTTTGTGATTAGGCA
768 TTTGCGCCTCAAATGAGACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCA
* * ** *
3525799 CTATAAACACATTCTCC-TCCTTAGGATAAATGGTATTGATGATTTTCTTTTACATAGAAATCTT
833 CTATAAACACATTC-CCTTCATTAGGATAAATGATATTGATGATTTT-TTTTGGATGGAAATCTT
* * *
3525863 TTCTTTGCCCTATTTTCCTT-AAAATCAAAGTTCTTCCCTTAAATAAGACACGC
896 TTCTTTGCCTTATTTT-CTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGC
* * *
3525916 ATCGATTCTCATAATAGTCTCCACTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAG
1 ATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAG
* *
3525981 AATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT
66 GATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT
* * *
3526046 CAAAGTTTGCCTCTTATATAAG--AAACATTACTACTCATGCAAATCCCCATTTTTTTAGGATTA
131 CAAAGTTTGTCTCTTATATAAGACAAACATTACAACTCATGCAAATCCCCATTTTTTTTGGATTA
* *
3526109 GGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTCTTGTTTCGCAAGAAAAG
196 GGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAAGG
* * ** *
3526174 CTTTTTT-CCA-AAATTATTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAAACATTAATTCTA
261 CTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATTGATTCTA
* *
3526237 GTGATGATATTCATTCA-TTT-TGA--AAGCACTATAAACACATTCCCTTCATTAGGATAAATGA
326 GTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGA
* * *
3526298 TATTGATGATTTTTTTTTGGATGAAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCGAAGTTCA
391 TATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCA
* *
3526363 TCCCTTAAATAAGACAAGCATTGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAA
456 TCCCTTAAATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAA
** * *
3526428 AACACATTCCCTTCATTAGGGCACATGGCATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTT
521 AACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTT
* *
3526493 TCAACATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCATGCAAAT
586 CCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCATGCAAAT
*
3526558 CCCCATTTTTTTTAGGATTAGGCACCATAGACATAATCTTATCATTAGGATAAACCATATTGATG
651 CCCCATTTTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATG
* * * *
3526623 CTTTTGTTCCGCAAGACATGCTTTTTTCCCACAAATTATTGTAATGTCTAAGTTTGCGCCTCAAA
716 CTTTTGTTTCGCAAGAAATGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTGCGCCTCAAA
* *
3526688 TGAGACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACCACAAACACATT
781 TGAGACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
3526753 CCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGGATGGAAATCTTTTCTTTGCCTTATT
846 CCCTTCATTAGGATAAATGATATTGATGA-TTTTTTTTGGATGGAAATCTTTTCTTTGCCTTATT
* *
3526818 TTCTTGAAAATCAAAGTTAATCCCTTAAATAAAACAAGC
910 TTCTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGC
* *
3526857 ACCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAG
1 ATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAG
* * * *
3526922 GATACATGGCATTGATACTTTGGTGTCACAAGAAAAGCTTTTCTTTCCATCATTATTGATAGAAT
66 GATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT
* *
3526987 CAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTTTTTAGGATT
131 CAAAGTTTGTCTCTTATATAAGACAAACATTACAACTCATGCAAATCCCCATTTTTTTT-GGATT
* *
3527052 AGGCACCATAGACATAATCTTCTCATTAGGATAAACCATTTTGATGCTTTTGTTTCGCAAGAAAT
195 AGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAAG
* * *
3527117 GCTTTTTTCCCAACAATTATTGTAAAGTCTTAGTTTGTGCCTCAAATGAGACAAACATTGATTCT
260 GCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATTGATTCT
*
3527182 GGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATG
325 AGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATG
3527247 ATATTGATGATTTTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGT
390 ATATTGATGA--TTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGT
**
3527312 TCATCCCTTAAATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATTAAGAAG
453 TCATCCCTTAAATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGA-TGGGAAG
* * *
3527377 CCAAAACACATTCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAAAAAAGCTTTT
517 CCAAAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTT
* * * * * * * *
3527442 CTTTTCTCCGTTTTTGATAGAATCAAAGTTTATCTCTTATATAAGACAAACATGAATACGCATAC
582 CTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCATGC
* * * **
3527507 AAATCCCCATTCTTTTCTT--GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATTATA
647 AAATCCCCATT-TTTT-TTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATA
* ** * ** * *
3527570 TTGATGCTTTGGATTT-GCAAGAAATGCTTTTTTCCTGCCAATTTTTGTAGGGTCTAAGTTCGTG
710 TTGATGCTTTTG-TTTCGCAAGAAATGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTGCG
* * * * * *
3527634 CCTCAAATGAGGCAAACATGGATTCTAGTGAT-AACTTGATTCATTTTGTGATTAAGCACTAGAA
774 CCTCAAATGAGACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAA
* * * * * *
3527698 AGACATTCTCC-TCATTAGGATAAATGATATTGATAATTTGCTTTTGCCA-AGAAATCTTATCTT
839 ACACATTC-CCTTCATTAGGATAAATGATATTGATGATTT-TTTTTG-GATGGAAATCTTTTCTT
* * * *
3527761 TGCCTTATTTTCCTT-AAAATCAAAATTCGTTCCTTAAATAAGATAAGC
901 TGCCTTATTTT-CTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGC
* * * *
3527809 ATCGATTCTCATAATAGTCTCCTTTCCTTTCAAGATTGGGAAACCAAAACACATTCCCTTCATTA
1 ATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACACATTCCCTTCATTA
* * * *
3527874 GGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTCCTTTCCATCGTTTTTGATAGAA
65 GGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAA
* * * * ***
3527939 TCAAGGTTTGCCTCTCATATAAGACAAACATGA-ATACTCAAATAAATCCCCATTCTTTTCTT-G
130 TCAAAGTTTGTCTCTTATATAAGACAAACATTACA-ACTCATGCAAATCCCCATT-TTTT-TTGG
* * ** * * * *
3528002 ATTAGGCATCATAAACATAGCCTTCTGATTAGGATAGACGATATTGACG-TTTTAGTTAT-GCAA
192 ATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTT-GTT-TCGCAA
* **
3528065 GAATGG-GATTTTCCCACCAATTTTTGTAAAGTCTAA----GT---T----T--G--------TG
255 GAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATTG
*
3528108 ---C----------C-TCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC-TCCTTAGGA
320 ATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCTTCATTAGGA
* * * * *
3528158 TAAATGGTATTGATGATTTTCTTTTACATAGAAATCTTTTCTTTGCCCTATTTTCCTT-AAAATC
384 TAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTT-CTTGAAAATC
* * * * *
3528222 AAAGTTCTTCCCTTAAATAAGACACGCATCGATTCTCATAATAGTCTCCACTCCTTTCAAGATGG
448 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGG
*
3528287 GAAGCCAAAACACATTCCCTTCATTAGAATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGC
513 GAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGC
*
3528352 TTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTATATAAG--AAACATTACTACTC
578 TTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATTACTACTC
3528415 ATGCAAATCCCCA-TTTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCA
643 ATGCAAATCCCCATTTTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCA
* * *
3528479 TATTGATGCTCTTGTTTCGCAAGAAAAGCTTTTTT-CCA-AAATTATTGTAAAGTCTAAGTTTGC
708 TATTGATGCTTTTGTTTCGCAAGAAATGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTGC
* * * *
3528542 ACCTCAAATGAGACAAACATTAATTCTAGTGATGATATTCATTCA-TTT-TGA--AAGCACTATA
773 GCCTCAAATGAGACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATA
*
3528603 AACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGGATGAAAATCTTTTCTTT
838 AACACATTCCCTTCATTAGGATAAATGATATTGATGA-TTTTTTTTGGATGGAAATCTTTTCTTT
*
3528668 GCCTTATTTTCTTGAAAATCGAAGTTCATCCCTTAAATAAGACAAGC
902 GCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGC
* *
3528715 ATTGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAG
1 ATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAG
** * * *
3528780 GGCACATGGCATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTTTCAACATTTTTGATAGAAT
66 GATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT
*
3528845 CAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTTTTTAGGATT
131 CAAAGTTTGTCTCTTATATAAGACAAACATTACAACTCATGCAAATCCCCATTTTTTTT-GGATT
* * * *
3528910 AGGCACCATAGACATAATCTTATCATTAGGATAAACCATATTGATGCTTTTGTTCCGCAAGACAT
195 AGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAAG
* * * *
3528975 GCTTTTTTCCCACAAATTATTGTAATGTCTAAGTTTGCGCCTCAAATGAGACAAACATTGATTCT
260 GCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATTGATTCT
* *
3529040 AGTGATGATCTTCATTCATTTTGTGATTAGGCACCACAAACACATTCCCTTCATTAGGATAAATG
325 AGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATG
* *
3529105 ATATTGATGA-TTTTTTTTGGATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTA
390 ATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTC
* * *
3529169 ATCCCTTAAATAAAACAAGCACCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCA
455 ATCCCTTAAATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGGAAGCCA
*
3529234 AAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCACAAGAAAAGCTTTTCTT
520 AAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTT
* * *
3529299 TCCATCATTATTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAA
585 TCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCATGCAAA
*
3529364 TCCCCATTTTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATTTTGAT
650 TCCCCATTTTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGAT
* *
3529429 GCTTTTGTTTCGCAAGAAATGCTTTTTTCCCACAAATTATTGTAATGTCTAAGTTTGCGCCTCAA
715 GCTTTTGTTTCGCAAGAAATGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTGCGCCTCAA
3529494 ATGAGACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAT
780 ATGAGACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAT
*
3529559 TCCCTTCATTAGGATAAATGATATTGATG--TTTTTTTGGATGGAAATCTTTTCTTTGCTTTATT
845 TCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTGGATGGAAATCTTTTCTTTGCCTTATT
*
3529622 TTCTTGAAAATCAAAGTTCATCCCTTAAATAAGTCAAGC
910 TTCTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGC
* * *
3529661 ATCGATTCCCGCAACAGTCTCCGTTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAG
1 ATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAG
* * *
3529726 GATACATGGCATTGATGCTTTGGTGTCTCCAGAAAAGCTTTTCTTTTCACCATTTTTGATAGAAT
66 GATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT
* * * ***
3529791 CAAAGTTTGCCTCTCATATAAGACAAACATGA-ATACTCAAATAAATCCCCATTCTTTTCTT-GA
131 CAAAGTTTGTCTCTTATATAAGACAAACATTACA-ACTCATGCAAATCCCCATT-TTTT-TTGGA
* * ** * * * *
3529854 TTAGGCATCATAAACATAGCCTTCTGATTAGGATAGACGATATTGACG-TTTTAGTTAT-GCAAG
193 TTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTT-GTT-TCGCAAG
* **
3529917 AATGG-GATTTTCCCACCAATTTTTGTAAAGTCTAA----GT---T----T--G--------TG-
256 AAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATTGA
*
3529959 --C----------C-TCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC-TCCTTAGGAT
321 TTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCTTCATTAGGAT
* * * * *
3530010 AAATGGTATTGATGATTTTCTTTTACATAGAAATCTTTTCTTTGCCCTATTTTCCTT-AAAATCA
385 AAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTT-CTTGAAAATCA
* * * * *
3530074 AAGTTCTTCCCTTAAATAAGACACGCATCGATTCTCATAATAGTCTCCACTCCTTTCAAGATGGG
449 AAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGG
*
3530139 AAGCCAAAACACATTCCCTTCATTAGAATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCT
514 AAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCT
*
3530204 TTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTATATAAG--AAACATTACTACTCA
579 TTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCA
3530267 TGCAAATCCCCA-TTTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCAT
644 TGCAAATCCCCATTTTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCAT
**
3530331 ATTGATGCTTTTGTTTCGCAAGAAGGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTGCG
709 ATTGATGCTTTTGTTTCGCAAGAAATGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTGCG
*
3530396 CCTCAAATGAGACGAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAA
774 CCTCAAATGAGACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAA
* *
3530461 ACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTTGCATGGAACTCTTTTCTTT
839 ACACATTCCCTTCATTAGGATAAATGATATTGATGA--TTTTTTTTGGATGGAAATCTTTTCTTT
*
3530526 GCCTTATTTTCTTGAAAATCAAAGTTCATCTCTTAAATAAGACAAGC
902 GCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGC
* * * * *
3530573 ACCAATTCTCATAACAGTCTCCATTCCTTTCAAGACTAGGAAGCCAAAACACATTCTCTTCATTA
1 ATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACACATTCCCTTCATTA
* * * * *
3530638 GGATACATGGCATTGATGCTTTGGGGTCGCAAAAAAAGCTTTTCTTTCCTCCGTTTTTGATATAA
65 GGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAA
* * * * * *
3530703 TCAAATTTTATCTCTTATATAAGACAAACATGA-ATACACATACAAATCCCAATTCTTTTCTT-G
130 TCAAAGTTTGTCTCTTATATAAGACAAACATTACA-ACTCATGCAAATCCCCATT-TTTT-TTGG
* * **** *
3530766 ATTAGGCACCATAAACATAGTCTTCTCATTAGGATACGTTATATTGATGCTTTGGATTT-GCAAG
192 ATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTG-TTTCGCAAG
* * * * * * *
3530830 AAATGCTTTTTTCCCGCCAATTTTTGTAAGGTCTAAATTTCTGCCTCAAATGAGGCAAACATGGA
256 AAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATTGA
* * * * *
3530895 TTCTAGTGATGAACTTGATTCATTTTGTGATTAAGCACTAGAAAGACATTCTCCTT-ATTAGGAT
321 TTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCTTCATTAGGAT
* *
3530959 AAATGATATTGATGATTTTTTTTTTGCATGGAAATCTTATCTTTGCCCTATTTTCCTT-AAAATC
385 AAATGATATTGATGA-TTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTT-CTTGAAAATC
* * * * ** * *
3531023 AAAATTCATTCCTTAAATAAGACAGGCATTGATTCTCGTAATAGTCTCCATTTCTTTCAAGATTG
448 AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGA-TG
* * * *
3531088 GGAAGCCAAAACACAGTCCCTTCATTAGGATATATGGCATTGATGCTTTGGTGTCGCAGGAAAAG
512 GGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAG
* * * * * * * *
3531153 CGTTCCTTTCTATCATTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATGAATGCT
577 CTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATTACTACT
** * * ** * * *
3531218 CATAAAAATCCCCATTCTTTCTT--GATTAGGCACCATAAACATAGCCTTCTGATTAGAATAGAC
642 CATGCAAATCCCCATT-TTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAAC
* * *** *
3531281 GATATTGACG-TTTTAGTTAT-GCAAGAAA-GGGATTTTCCCACCAATTTTTGTAAAGTCTAAGT
706 CATATTGATGCTTTT-GTT-TCGCAAGAAATGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGT
* * *
3531343 TTGTGCCTCAAATGAGACAATCATAGATTCTAGTGATGATCTTCATTCATT
769 TTGCGCCTCAAATGAGACAAACATTGATTCTAGTGATGATCTTCATTCATT
3531394 AGGATAAACC
Statistics
Matches: 28278, Mismatches: 3341, Indels: 2524
0.83 0.10 0.07
Matches are distributed among these distances:
901 94 0.00
902 251 0.01
903 22 0.00
904 38 0.00
905 1488 0.05
906 1018 0.04
907 135 0.00
908 322 0.01
909 284 0.01
910 342 0.01
911 746 0.03
912 288 0.01
913 329 0.01
914 741 0.03
915 472 0.02
916 214 0.01
917 307 0.01
918 16 0.00
919 8 0.00
921 2 0.00
924 4 0.00
925 2 0.00
927 21 0.00
928 7 0.00
930 8 0.00
931 10 0.00
932 1 0.00
934 1 0.00
935 3 0.00
936 6 0.00
937 21 0.00
938 17 0.00
939 31 0.00
940 259 0.01
941 1894 0.07
942 66 0.00
943 321 0.01
944 587 0.02
945 913 0.03
946 2343 0.08
947 1845 0.07
948 1576 0.06
949 4275 0.15
950 1476 0.05
951 839 0.03
952 1555 0.05
953 1743 0.06
954 49 0.00
955 22 0.00
956 3 0.00
959 7 0.00
960 3 0.00
961 1 0.00
962 1 0.00
963 6 0.00
964 2 0.00
965 2 0.00
966 2 0.00
967 2 0.00
968 3 0.00
969 5 0.00
970 7 0.00
971 1 0.00
972 4 0.00
973 1 0.00
974 9 0.00
975 5 0.00
976 5 0.00
977 2 0.00
978 10 0.00
979 5 0.00
980 16 0.00
982 3 0.00
983 6 0.00
984 1 0.00
985 4 0.00
986 1 0.00
987 4 0.00
988 9 0.00
989 11 0.00
990 9 0.00
991 5 0.00
992 2 0.00
993 8 0.00
994 10 0.00
995 21 0.00
996 5 0.00
997 8 0.00
998 18 0.00
999 24 0.00
1000 22 0.00
1001 11 0.00
1002 6 0.00
1003 2 0.00
1004 12 0.00
1005 8 0.00
1007 1 0.00
1008 5 0.00
1009 7 0.00
1010 10 0.00
1011 9 0.00
1012 13 0.00
1013 36 0.00
1014 15 0.00
1015 52 0.00
1016 48 0.00
1017 53 0.00
1018 8 0.00
1019 6 0.00
1020 15 0.00
1021 8 0.00
1022 1 0.00
1023 2 0.00
1024 4 0.00
1026 8 0.00
1027 1 0.00
1028 4 0.00
1029 10 0.00
1030 9 0.00
1031 1 0.00
1032 1 0.00
1033 1 0.00
1034 2 0.00
1035 3 0.00
1036 2 0.00
1037 6 0.00
1038 19 0.00
1039 1 0.00
1040 7 0.00
1041 6 0.00
1042 12 0.00
1043 15 0.00
1044 13 0.00
1045 16 0.00
1046 20 0.00
1047 10 0.00
1048 14 0.00
1049 24 0.00
1050 10 0.00
1051 14 0.00
1052 13 0.00
1053 13 0.00
1054 12 0.00
1055 3 0.00
1056 8 0.00
1057 13 0.00
1058 12 0.00
1059 14 0.00
1060 19 0.00
1061 13 0.00
1062 7 0.00
1063 90 0.00
1064 30 0.00
1065 46 0.00
1066 39 0.00
1067 18 0.00
1068 10 0.00
1069 7 0.00
1070 1 0.00
1073 2 0.00
1074 1 0.00
1075 2 0.00
1076 2 0.00
1079 2 0.00
1080 2 0.00
1081 4 0.00
1082 6 0.00
1083 7 0.00
1084 7 0.00
1085 10 0.00
1086 1 0.00
1087 5 0.00
1088 1 0.00
1089 1 0.00
1090 3 0.00
1091 1 0.00
1092 6 0.00
1093 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (948 bp):
ATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAG
GATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT
CAAAGTTTGTCTCTTATATAAGACAAACATTACAACTCATGCAAATCCCCATTTTTTTTGGATTA
GGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAAGG
CTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATTGATTCTA
GTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGA
TATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCA
TCCCTTAAATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAA
AACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTT
CCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCATGCAAAT
CCCCATTTTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATG
CTTTTGTTTCGCAAGAAATGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTGCGCCTCAAA
TGAGACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
CCCTTCATTAGGATAAATGATATTGATGATTTTTTTTGGATGGAAATCTTTTCTTTGCCTTATTT
TCTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGC
Found at i:3507070 original size:158 final size:156
Alignment explanation
Indices: 3506413--3508983 Score: 818
Period size: 158 Copynumber: 16.3 Consensus size: 156
3506403 TTCATTTTGT
* * * * * *
3506413 GATTAGGCACTATAAACACATTCTCC-TCCTTAGGATAAATGGTATTGATGATTTTCTTTTACAT
1 GATTAGGCACCATAAACACATTC-CCTTCATTAGGATAAATGATATTGATGCTTTTTTTTTGCA-
* **
3506477 AG-AAATCTTTTCTTTGCC-CTATTTTCCTT-AAAATCAAAGTTCTTCCCTTAAATAAGACACGC
64 AGAAAATCTTTTCTTTGCCTC-ATTTT-ATTGAAAATCAAAG-T-TTCCCTTAAATAAGACAAAC
* ** * *
3506539 ATCGATTCTCATAATAGTCTCCACTCCTTTCAA
125 ATTGATTCTCGCAA-AGTCTCCATTCCTTTTAA
* * * * ** * ** * *
3506572 GA-TGGGAAGCCA-AAACACATTCCCTTCATTAGAATACATGGCATTGATACTTTGGTGTCGCAA
1 GATTAGGCA-CCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAA
* * * *
3506635 GAAAAGCTTTTCTTT-CCACCA-TTT-TTGATAGAATCAAAGTTTGCCTCTTATACAAG--AAAC
65 GAAAATCTTTTCTTTGCC-TCATTTTATTGA-A-AATCAAAGTTT-CC-CTTAAATAAGACAAAC
* * * *
3506695 ATT-ACTACTCATGCAAA-TCCCCATT-TTTTTAG
125 ATTGA-TTCTC--GCAAAGTCTCCATTCCTTTTAA
* * * * ** * * *
3506727 GATTAGGCACCATAGACATAAT-CTTCTCATTAGGATAAACCATATTGATGCTCTTGTTTCGCAA
1 GATTAGGCACCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAA
* * ** * * * *
3506791 GAAAAGC-TTT-TTT-CC-AAAATTATTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAAACAT
65 GAAAATCTTTTCTTTGCCTCATTTTATTG-AAAATCAAAGTTT-C-CCTTAAATAAGACAAACAT
* * ** * * * *
3506852 TAATTCTAGTGATGATATTCATTCATTTT--
127 TGATTCTCGCAAAG-TCTCCATTCCTTTTAA
* * * * *
3506881 GA--AAGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGGATG
1 GATTAGGCACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAAG
* * * *
3506944 AAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCGAAGTTCATCCCTTAAATAAGACAAGCATTG
66 AAAATCTTTTCTTTGCCTCATTTTATTGAAAATCAAAGTT--TCCCTTAAATAAGACAAACATTG
*
3507009 ATTCTCGCAACAGTCTCCATTCCTTTCAA
129 ATTCTCGCAA-AGTCTCCATTCCTTTTAA
* * ** * ** * * *
3507038 GA-TGGGAAGCCA-AAACACATTCCCTTCATTAGGGCACATGGCATTGATGCTTTGGTGTCT-CA
1 GATTAGGCA-CCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTT-TTTTTTGCA
* * ** * *
3507100 AGAAAAGCTTTTCTTTTCAACA-TTT-TTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAAC
64 AGAAAATCTTTTCTTTGCCTCATTTTATTGA-A-AATCAAAG-TT-TCCCTTAAATAAGACAAAC
* * ** *
3507163 ATT-ACTACTCATGCAAA-TCCCCATTTTTTTTAG
125 ATTGA-TTCTC--GCAAAGTCTCCATTCCTTTTAA
* * * * ** * **
3507196 GATTAGGCACCATAGACATAAT-CTTATCATTAGGATAAACCATATTGATGCTTTTGTTCCGCAA
1 GATTAGGCACCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAA
* * * ** ** * * *
3507260 G-ACATGC-TTT-TTTCCCACAAATTATTGTAATGTCTAAGTTTGCGCCTCAAATGAGACAAACA
65 GAAAAT-CTTTTCTTTGCCTCATTTTATTG-AAAATCAAAGTTT-C-CCTTAAATAAGACAAACA
* ** * * * **
3507322 TTGATTCTAGTGATGATCTTCATTCATTTTGT
126 TTGATTCTCGCAAAG-TCTCCATTCCTTTTAA
* * * *
3507354 GATTAGGCACCACAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGGATG
1 GATTAGGCACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAAG
* * * * * **
3507419 GAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTAATCCCTTAAATAAAACAAGCACCG
66 AAAATCTTTTCTTTGCCTCATTTTATTGAAAATCAAAGTT--TCCCTTAAATAAGACAAACATTG
*
3507484 ATTCTCGCAACAGTCTCCATTCCTTTCAA
129 ATTCTCGCAA-AGTCTCCATTCCTTTTAA
* * * ** * ** * **
3507513 GA-TGGGAAGCCA-AAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCACAA
1 GATTAGGCA-CCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAA
* *
3507576 GAAAAGCTTTTCTTT-CCATCA--TTATTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAAC
65 GAAAATCTTTTCTTTGCC-TCATTTTATTGA-A-AATCAAAGTTT-CC-CTTAAATAAGACAAAC
* * ** *
3507638 ATT-ACTACTCATGCAAA-TCCCCATTTTTTTTAG
125 ATTGA-TTCTC--GCAAAGTCTCCATTCCTTTTAA
* * * * ** * * *
3507671 GATTAGGCACCATAGACATAAT-CTTCTCATTAGGATAAACCATTTTGATGCTTTTGTTTCGCAA
1 GATTAGGCACCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAA
* * ** ** * * *
3507735 G-AAATGC-TTT-TTTCCCACAAATTATTGTAATGTCTAAGTTTGCGCCTCAAATGAGACAAACA
65 GAAAAT-CTTTTCTTTGCCTCATTTTATTG-AAAATCAAAGTTT-C-CCTTAAATAAGACAAACA
* ** * * * **
3507797 TTGATTCTAGTGATGATCTTCATTCATTTTGT
126 TTGATTCTCGCAAAG-TCTCCATTCCTTTTAA
* * *
3507829 GATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATG---TTTTTTTGGATG
1 GATTAGGCACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAAG
* * * * * * * *
3507891 GAAATCTTTTCTTTGCTTTATTTTCTTGAAAATCAAAGTTCATCCTTTAAATAAGTCAAGCATCG
66 AAAATCTTTTCTTTGCCTCATTTTATTGAAAATCAAAGTT--TCCCTTAAATAAGACAAACATTG
* * *
3507956 ATTCCCGCAACAGTCTCCGTTCCTTTCAA
129 ATTCTCGCAA-AGTCTCCATTCCTTTTAA
* * * ** * * * *
3507985 GA-TGGGAAGCCA-AAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCT-CC
1 GATTAGGCA-CCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTT-TTTTTTGCA
* * * *
3508047 AGAAAAGCTTTTCTTTTCAC-CA-TTT-TTGATAGAATCAAAGTTTGCTTCTTATATAAGACAAA
64 AGAAAATCTTTTCTTTGC-CTCATTTTATTGA-A-AATCAAAGTTT-C-CCTTAAATAAGACAAA
* * ** *
3508109 CATT-ACTACTCATGCAAA-TCCCCATTTTTTTTAG
124 CATTGA-TTCTC--GCAAAGTCTCCATTCCTTTTAA
* * * * ** * *
3508143 GA-TAGGCACCATAGACATAAT-CTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAA
1 GATTAGGCACCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAA
** * * * * ** * * *
3508206 GAAAGGC-TTT-TTTCCCAACA-ATTATTGTAAAGTCTTAGTTTGTGCCTCAAATGAGACAAACA
65 GAAAATCTTTTCTTTGCC-TCATTTTATTG-AAAATCAAAG-TT-TCCCTTAAATAAGACAAACA
* ** * * * **
3508268 TTGATTCTGGTGATGATCTTCATTCATTTTGT
126 TTGATTCTCGCAAAG-TCTCCATTCCTTTTAA
* *
3508300 GATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTTTGCA
1 GATTAGGCACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATG--CTTTTTTTTTGCA
* * * * *
3508365 TGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGCAT
64 AGAAAATCTTTTCTTTGCCTCATTTTATTGAAAATCAAAGTT--TCCCTTAAATAAGACAAACAT
* * *
3508430 CGATTCTCACAACAGTCTCCATTCCTTTCAA
127 TGATTCTCGCAA-AGTCTCCATTCCTTTTAA
* * * * ** ** * *
3508461 GATTAAGAAGCCA-AAACACATTCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAA
1 GATTAGGCA-CCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAA
* * * ** * *
3508525 AAAAAGCTTTTCTTT-TCTCCGTTT-TTGATAGAATCAAAGTTTATCTCTTATATAAGACAAACA
65 GAAAATCTTTTCTTTGCCTCATTTTATTGA-A-AATCAAAG-TT-TCCCTTAAATAAGACAAACA
* * * * **
3508588 -TGAAT-ACGCATACAAATCCCCATT-CTTTTCTT
126 TTGATTCTCGC--A-AAGTCTCCATTCCTTTT-AA
* * * * * ***
3508620 GATTAGGCACCATAAACATAGT-CTTCTCATTAGGATACATTATATTGATGCTTTGGATTTGCAA
1 GATTAGGCACCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAA
* *** * * * * *
3508684 G-AAATGC-TTT-TTT-CCTGCCAATTT-TTGTAGGGTCTAAGTTCGTGCCTCAAATGAGGCAAA
65 GAAAAT-CTTTTCTTTGCCT--CATTTTATTG-AAAATCAAAGTT--TCCCTTAAATAAGACAAA
* * * ** * **
3508744 CATGGATTCTAGTGATAA--CTTGATTCATTTTGT
124 CATTGATTCTCG-CA-AAGTCTCCATTCCTTTTAA
* * * * ** **
3508777 GATTAAGCACTAGAAAGACATTCTCC-TCATTAGGATAAATGATATTGATAATTTGCTTTTGCCA
1 GATTAGGCACCATAAACACATTC-CCTTCATTAGGATAAATGATATTGATGCTTTTTTTTTG-CA
* * * * * * *
3508841 AG-AAATCTTATCTTTGCCTTATTTTCCTT-AAAATCAAAATTCGTTCCTTAAATAAGATAAGCA
64 AGAAAATCTTTTCTTTGCCTCATTTT-ATTGAAAATCAAAGTT--TCCCTTAAATAAGACAAACA
* ** * *
3508904 TCGATTCTCATAATAGTCTCCTTTCCTTTCAA
126 TTGATTCTCGCAA-AGTCTCCATTCCTTTTAA
* * * *
3508936 GATTGGGAAACCA-AAACACATTCCCTTCATTAGGATACATGACATTGA
1 GATTAGG-CACCATAAACACATTCCCTTCATTAGGATAAATGATATTGA
3508984 ATGGTGTCGC
Statistics
Matches: 1723, Mismatches: 530, Indels: 318
0.67 0.21 0.12
Matches are distributed among these distances:
152 50 0.03
153 26 0.02
154 15 0.01
155 129 0.07
156 152 0.09
157 176 0.10
158 689 0.40
159 330 0.19
160 56 0.03
161 87 0.05
162 13 0.01
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (156 bp):
GATTAGGCACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAAG
AAAATCTTTTCTTTGCCTCATTTTATTGAAAATCAAAGTTTCCCTTAAATAAGACAAACATTGAT
TCTCGCAAAGTCTCCATTCCTTTTAA
Found at i:3507492 original size:475 final size:475
Alignment explanation
Indices: 3506400--3509202 Score: 4005
Period size: 475 Copynumber: 5.9 Consensus size: 475
3506390 AGTTTGTGCC
* *
3506400 TCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC-TCCTTAGGATAAATGGTATTGATGA
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCTTCATTAGGATAAATGATATTGATGA
* * * * *
3506464 TTTTCTTTTACATAGAAATCTTTTCTTTGCCCTATTTTCCTT-AAAATCAAAGTTCTTCCCTTAA
65 TTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTT-CTTGAAAATCAAAGTTCATCCCTTAA
* * * *
3506528 ATAAGACACGCATCGATTCTCATAATAGTCTCCACTCCTTTCAAGATGGGAAGCCAAAACACATT
129 ATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATT
* *
3506593 CCCTTCATTAGAATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATT
194 CCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATT
*
3506658 TTTGATAGAATCAAAGTTTGCCTCTTATACAAG--AAACATTACTACTCATGCAAATCCCCA-TT
259 TTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTT
*
3506720 TTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTCTTGTT
324 TTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTT
* *
3506785 TCGCAAGAAAAGCTTTTTT-CCA-AAATTATTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAA
389 TCGCAAGAAATGCTTTTTTCCCACAAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAA
* *
3506848 ACATTAATTCTAGTGATGATAT
454 ACATTGATTCTAGTGATGATCT
*
3506870 TCATTCA-TTT-TGA--AAGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
* * *
3506931 TTTTTTTTGGATGAAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCGAAGTTCATCCCTTAAAT
66 TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
* *
3506996 AAGACAAGCATTGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
131 AAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
** * * *
3507061 CTTCATTAGGGCACATGGCATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTTTCAACATTTT
196 CTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
*
3507126 TGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
261 TGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
* *
3507191 TTTAGGATTAGGCACCATAGACATAATCTTATCATTAGGATAAACCATATTGATGCTTTTGTTCC
326 TTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTC
* *
3507256 GCAAGACATGCTTTTTTCCCACAAATTATTGTAATGTCTAAGTTTGCGCCTCAAATGAGACAAAC
391 GCAAGAAATGCTTTTTTCCCACAAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAAC
3507321 ATTGATTCTAGTGATGATCT
456 ATTGATTCTAGTGATGATCT
* *
3507341 TCATTCATTTTGTGATTAGGCACCACAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
* *
3507406 TTTTTTTTGGATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTAATCCCTTAAAT
66 TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
* * *
3507471 AAAACAAGCACCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
131 AAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
* * * *
3507536 CTTCATTAGGATACATGGCATTGATACTTTGGTGTCACAAGAAAAGCTTTTCTTTCCATCATTAT
196 CTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
3507601 TGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
261 TGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
*
3507666 TTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATTTTGATGCTTTTGTTTC
326 TTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTC
*
3507731 GCAAGAAATGCTTTTTTCCCACAAATTATTGTAATGTCTAAGTTTGCGCCTCAAATGAGACAAAC
391 GCAAGAAATGCTTTTTTCCCACAAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAAC
3507796 ATTGATTCTAGTGATGATCT
456 ATTGATTCTAGTGATGATCT
3507816 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATG--
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
* * *
3507879 -TTTTTTTGGATGGAAATCTTTTCTTTGCTTTATTTTCTTGAAAATCAAAGTTCATCCTTTAAAT
66 TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
* * * *
3507943 AAGTCAAGCATCGATTCCCGCAACAGTCTCCGTTCCTTTCAAGATGGGAAGCCAAAACACATTCC
131 AAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
* * *
3508008 CTTCATTAGGATACATGGCATTGATGCTTTGGTGTCTCCAGAAAAGCTTTTCTTTTCACCATTTT
196 CTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
*
3508073 TGATAGAATCAAAGTTTGCTTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
261 TGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
3508138 TTTAGGA-TAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTC
326 TTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTC
* * *
3508202 GCAAGAAAGGCTTTTTTCCCA-ACAATTATTGTAAAGTCTTAGTTTGTGCCTCAAATGAGACAAA
391 GCAAGAAATGCTTTTTTCCCACA-AATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAA
*
3508266 CATTGATTCTGGTGATGATCT
455 CATTGATTCTAGTGATGATCT
3508287 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGA-
3508352 TTTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAA
65 -TTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAA
**
3508417 ATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATTAAGAAGCCAAAACACAT
129 ATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACACAT
* * * * *
3508482 TCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAAAAAAGCTTTTCTTTTCTCCGT
193 TCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCAT
** * * * *
3508547 TTTTGATAGAATCAAAGTTTATCTCTTATATAAGACAAACATGAATACGCATACAAATCCCCATT
258 TTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATT
* * * ** *
3508612 CTTTTCTT--GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATTATATTGATGCTTTG
323 -TTTT-TTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTT
** * * ** * *
3508675 GATTT-GCAAGAAATGCTTTTTTCCTGCCAATTTTTGTAGGGTCTAAGTTCGTGCCTCAAATGAG
386 G-TTTCGCAAGAAATGCTTTTTTCCCACAAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAG
* * *
3508739 GCAAACATGGATTCTAGTGAT-AACT
450 ACAAACATTGATTCTAGTGATGATCT
* * * * *
3508764 TGATTCATTTTGTGATTAAGCACTAGAAAGACATTCTCC-TCATTAGGATAAATGATATTGATAA
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCTTCATTAGGATAAATGATATTGATGA
** * * * * *
3508828 TTTGCTTTTGCCA-AGAAATCTTATCTTTGCCTTATTTTCCTT-AAAATCAAAATTCGTTCCTTA
65 TTTTTTTTTG-CATGGAAATCTTTTCTTTGCCTTATTTT-CTTGAAAATCAAAGTTCATCCCTTA
* * * * *
3508891 AATAAGATAAGCATCGATTCTCATAATAGTCTCCTTTCCTTTCAAGATTGGGAAACCAAAACACA
128 AATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACACA
* * * * *
3508956 TTCCCTTCATTAGGATACATGACATTGA----ATGGTGTCGCAAGAAAAGCTTTCCTTTCCATCG
192 TTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCA
* * * * ***
3509017 TTTTTGATAGAATCAAGGTTTGCCTCTCATATAAGACAAACATGAATACTCAAATAAATCCCCAT
257 TTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCAT
* * ** * * * *
3509082 TCTTTTCTT--GATTAGGCATCATAAACATAGCCTTCTGATTAGGATAGACGATATTGACG-TTT
322 T-TTTT-TTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTT
*** * * *
3509144 TAGTTAT-GCAAG-AATGGGATTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCA
385 T-GTT-TCGCAAGAAATGCTTTTTTCCCACAAATTATTGTAAAGTCTAAGTTTGCGCCTCA
3509203 TTCATTTTGT
Statistics
Matches: 2135, Mismatches: 170, Indels: 56
0.90 0.07 0.02
Matches are distributed among these distances:
465 5 0.00
466 241 0.11
468 30 0.01
469 84 0.04
470 55 0.03
471 407 0.19
472 254 0.12
473 3 0.00
475 631 0.30
476 106 0.05
477 194 0.09
478 120 0.06
479 5 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (475 bp):
TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
AAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
CTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
TGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
TTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTC
GCAAGAAATGCTTTTTTCCCACAAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAAC
ATTGATTCTAGTGATGATCT
Found at i:3509870 original size:158 final size:156
Alignment explanation
Indices: 3509213--3511789 Score: 830
Period size: 158 Copynumber: 16.3 Consensus size: 156
3509203 TTCATTTTGT
* * * * * *
3509213 GATTAGGCACTATAAACACATTCTCC-TCCTTAGGATAAATGGTATTGATGATTTTCTTTTACAT
1 GATTAGGCACCATAAACACATTC-CCTTCATTAGGATAAATGATATTGATGCTTTTTTTTTGCA-
* **
3509277 AG-AAATCTTTTCTTTGCC-CTATTTTCCTT-AAAATCAAAGTTCTTCCCTTAAATAAGACACGC
64 AGAAAATCTTTTCTTTGCCTC-ATTTT-ATTGAAAATCAAAG-T-TTCCCTTAAATAAGACAAAC
* ** * *
3509339 ATCGATTCTCATAATAGTCTCCACTCCTTTCAA
125 ATTGATTCTCGCAA-AGTCTCCATTCCTTTTAA
* * * * ** * ** * *
3509372 GA-TGGGAAGCCA-AAACACATTCCCTTCATTAGAATACATGGCATTGATACTTTGGTGTCGCAA
1 GATTAGGCA-CCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAA
* * * *
3509435 GAAAAGCTTTTCTTT-CCACCA-TTT-TTGATAGAATCAAAGTTTGCCTCTTATACAAG--AAAC
65 GAAAATCTTTTCTTTGCC-TCATTTTATTGA-A-AATCAAAGTTT-CC-CTTAAATAAGACAAAC
* * * *
3509495 ATT-ACTACTCATGCAAA-TCCCCATT-TTTTTAG
125 ATTGA-TTCTC--GCAAAGTCTCCATTCCTTTTAA
* * * * ** * * *
3509527 GATTAGGCACCATAGACATAAT-CTTCTCATTAGGATAAACCATATTGATGCTCTTGTTTCGCAA
1 GATTAGGCACCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAA
* * ** * * * *
3509591 GAAAAGC-TTT-TTT-CC-AAAATTATTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAAACAT
65 GAAAATCTTTTCTTTGCCTCATTTTATTG-AAAATCAAAGTTT-C-CCTTAAATAAGACAAACAT
* * ** * * * *
3509652 TAATTCTAGTGATGATATTCATTCATTTT--
127 TGATTCTCGCAAAG-TCTCCATTCCTTTTAA
* * * * *
3509681 GA--AAGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGGATG
1 GATTAGGCACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAAG
* * * *
3509744 AAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCGAAGTTCATCCCTTAAATAAGACAAGCATTG
66 AAAATCTTTTCTTTGCCTCATTTTATTGAAAATCAAAGTT--TCCCTTAAATAAGACAAACATTG
*
3509809 ATTCTCGCAACAGTCTCCATTCCTTTCAA
129 ATTCTCGCAA-AGTCTCCATTCCTTTTAA
* * ** * ** * * *
3509838 GA-TGGGAAGCCA-AAACACATTCCCTTCATTAGGGCACATGGCATTGATGCTTTGGTGTCT-CA
1 GATTAGGCA-CCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTT-TTTTTTGCA
* * ** * *
3509900 AGAAAAGCTTTTCTTTTCAACA-TTT-TTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAAC
64 AGAAAATCTTTTCTTTGCCTCATTTTATTGA-A-AATCAAAG-TT-TCCCTTAAATAAGACAAAC
* * ** *
3509963 ATT-ACTACTCATGCAAA-TCCCCATTTTTTTTAG
125 ATTGA-TTCTC--GCAAAGTCTCCATTCCTTTTAA
* * * * ** * **
3509996 GATTAGGCACCATAGACATAAT-CTTATCATTAGGATAAACCATATTGATGCTTTTGTTCCGCAA
1 GATTAGGCACCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAA
* * * ** ** * * *
3510060 G-ACATGC-TTT-TTTCCCACAAATTATTGTAATGTCTAAGTTTGCGCCTCAAATGAGACAAACA
65 GAAAAT-CTTTTCTTTGCCTCATTTTATTG-AAAATCAAAGTTT-C-CCTTAAATAAGACAAACA
* ** * * * **
3510122 TTGATTCTAGTGATGATCTTCATTCATTTTGT
126 TTGATTCTCGCAAAG-TCTCCATTCCTTTTAA
* * * *
3510154 GATTAGGCACCACAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGGATG
1 GATTAGGCACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAAG
* * * * * **
3510219 GAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTAATCCCTTAAATAAAACAAGCACCG
66 AAAATCTTTTCTTTGCCTCATTTTATTGAAAATCAAAGTT--TCCCTTAAATAAGACAAACATTG
*
3510284 ATTCTCGCAACAGTCTCCATTCCTTTCAA
129 ATTCTCGCAA-AGTCTCCATTCCTTTTAA
* * * ** * ** * **
3510313 GA-TGGGAAGCCA-AAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCACAA
1 GATTAGGCA-CCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAA
* *
3510376 GAAAAGCTTTTCTTT-CCATCA--TTATTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAAC
65 GAAAATCTTTTCTTTGCC-TCATTTTATTGA-A-AATCAAAGTTT-CC-CTTAAATAAGACAAAC
* * ** *
3510438 ATT-ACTACTCATGCAAA-TCCCCATTTTTTTTAG
125 ATTGA-TTCTC--GCAAAGTCTCCATTCCTTTTAA
* * * * ** * * *
3510471 GATTAGGCACCATAGACATAAT-CTTCTCATTAGGATAAACCATTTTGATGCTTTTGTTTCGCAA
1 GATTAGGCACCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAA
* * ** ** * * *
3510535 G-AAATGC-TTT-TTTCCCACAAATTATTGTAATGTCTAAGTTTGCGCCTCAAATGAGACAAACA
65 GAAAAT-CTTTTCTTTGCCTCATTTTATTG-AAAATCAAAGTTT-C-CCTTAAATAAGACAAACA
* ** * * * **
3510597 TTGATTCTAGTGATGATCTTCATTCATTTTGT
126 TTGATTCTCGCAAAG-TCTCCATTCCTTTTAA
* * *
3510629 GATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATG---TTTTTTTGGATG
1 GATTAGGCACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAAG
* * * * * * * *
3510691 GAAATCTTTTCTTTGCTTTATTTTCTTGAAAATCAAAGTTCATCCTTTAAATAAGTCAAGCATCG
66 AAAATCTTTTCTTTGCCTCATTTTATTGAAAATCAAAGTT--TCCCTTAAATAAGACAAACATTG
* * *
3510756 ATTCCCGCAACAGTCTCCGTTCCTTTCAA
129 ATTCTCGCAA-AGTCTCCATTCCTTTTAA
* * * ** * * * *
3510785 GA-TGGGAAGCCA-AAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCT-CC
1 GATTAGGCA-CCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTT-TTTTTTGCA
* * * *
3510847 AGAAAAGCTTTTCTTTTCAC-CA-TTT-TTGATAGAATCAAAGTTTGCTTCTTATATAAGACAAA
64 AGAAAATCTTTTCTTTGC-CTCATTTTATTGA-A-AATCAAAGTTT-C-CCTTAAATAAGACAAA
* * ** *
3510909 CATT-ACTACTCATGCAAA-TCCCCATTTTTTTTAG
124 CATTGA-TTCTC--GCAAAGTCTCCATTCCTTTTAA
* * * * ** * *
3510943 GA-TAGGCACCATAGACATAAT-CTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAA
1 GATTAGGCACCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAA
** * * * * ** * * *
3511006 GAAAGGC-TTT-TTTCCCAACA-ATTATTGTAAAGTCTTAGTTTGTGCCTCAAATGAGACAAACA
65 GAAAATCTTTTCTTTGCC-TCATTTTATTG-AAAATCAAAG-TT-TCCCTTAAATAAGACAAACA
* ** * * * **
3511068 TTGATTCTGGTGATGATCTTCATTCATTTTGT
126 TTGATTCTCGCAAAG-TCTCCATTCCTTTTAA
* *
3511100 GATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTTTGCA
1 GATTAGGCACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATG--CTTTTTTTTTGCA
* * * * *
3511165 TGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGCAT
64 AGAAAATCTTTTCTTTGCCTCATTTTATTGAAAATCAAAGTT--TCCCTTAAATAAGACAAACAT
* * *
3511230 CGATTCTCACAACAGTCTCCATTCCTTTCAA
127 TGATTCTCGCAA-AGTCTCCATTCCTTTTAA
* * * * ** ** * *
3511261 GATTAAGAAGCCA-AAACACATTCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAA
1 GATTAGGCA-CCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAA
* * * ** * *
3511325 AAAAAGCTTTTCTTT-TCTCCGTTT-TTGATAGAATCAAAGTTTATCTCTTATATAAGACAAACA
65 GAAAATCTTTTCTTTGCCTCATTTTATTGA-A-AATCAAAG-TT-TCCCTTAAATAAGACAAACA
* * * * **
3511388 -TGAAT-ACGCATACAAATCCCCATT-CTTTTCTT
126 TTGATTCTCGC--A-AAGTCTCCATTCCTTTT-AA
* * * * * ***
3511420 GATTAGGCACCATAAACATAGT-CTTCTCATTAGGATACATTATATTGATGCTTTGGATTTGCAA
1 GATTAGGCACCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAA
* *** * * * * *
3511484 G-AAATGC-TTT-TTT-CCTGCCAATTT-TTGTAGGGTCTAAGTTCGTGCCTCAAATGAGGCAAA
65 GAAAAT-CTTTTCTTTGCCT--CATTTTATTG-AAAATCAAAGTT--TCCCTTAAATAAGACAAA
* * * ** * **
3511544 CATGGATTCTAGTGATAA--CTTGATTCATTTTGT
124 CATTGATTCTCG-CA-AAGTCTCCATTCCTTTTAA
* * * * ** **
3511577 GATTAAGCACTAGAAAGACATTCTCC-TCATTAGGATAAATGATATTGATAATTTGCTTTTGCCA
1 GATTAGGCACCATAAACACATTC-CCTTCATTAGGATAAATGATATTGATGCTTTTTTTTTG-CA
* * * * * * *
3511641 AG-AAATCTTATCTTTGCCTTATTTTCCTT-AAAATCAAAATTCGTTCCTTAAATAAGATAAGCA
64 AGAAAATCTTTTCTTTGCCTCATTTT-ATTGAAAATCAAAGTT--TCCCTTAAATAAGACAAACA
* ** * *
3511704 TCGATTCTCATAATAGTCTCCTTTCCTTTCAA
126 TTGATTCTCGCAA-AGTCTCCATTCCTTTTAA
* * * *
3511736 GATTGGGAAACCA-AAACACATTCCCTTCATTAGGATACATGACATTGATGCTTT
1 GATTAGG-CACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTT
3511790 GGTGTCGCAA
Statistics
Matches: 1727, Mismatches: 532, Indels: 318
0.67 0.21 0.12
Matches are distributed among these distances:
152 50 0.03
153 26 0.02
154 15 0.01
155 129 0.07
156 152 0.09
157 176 0.10
158 689 0.40
159 334 0.19
160 56 0.03
161 87 0.05
162 13 0.01
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (156 bp):
GATTAGGCACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAAG
AAAATCTTTTCTTTGCCTCATTTTATTGAAAATCAAAGTTTCCCTTAAATAAGACAAACATTGAT
TCTCGCAAAGTCTCCATTCCTTTTAA
Found at i:3510292 original size:475 final size:475
Alignment explanation
Indices: 3509200--3511809 Score: 3952
Period size: 475 Copynumber: 5.5 Consensus size: 475
3509190 AGTTTGTGCC
* *
3509200 TCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC-TCCTTAGGATAAATGGTATTGATGA
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCTTCATTAGGATAAATGATATTGATGA
* * * * *
3509264 TTTTCTTTTACATAGAAATCTTTTCTTTGCCCTATTTTCCTT-AAAATCAAAGTTCTTCCCTTAA
65 TTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTT-CTTGAAAATCAAAGTTCATCCCTTAA
* * * *
3509328 ATAAGACACGCATCGATTCTCATAATAGTCTCCACTCCTTTCAAGATGGGAAGCCAAAACACATT
129 ATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATT
* * *
3509393 CCCTTCATTAGAATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATT
194 CCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTTCACCATT
*
3509458 TTTGATAGAATCAAAGTTTGCCTCTTATACAAG--AAACATTACTACTCATGCAAATCCCCA-TT
259 TTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTT
*
3509520 TTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTCTTGTT
324 TTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTT
* *
3509585 TCGCAAGAAAAGCTTTTTT-CCA-AAATTATTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAA
389 TCGCAAGAAATGCTTTTTTCCCACAAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAA
* *
3509648 ACATTAATTCTAGTGATGATAT
454 ACATTGATTCTAGTGATGATCT
*
3509670 TCATTCA-TTT-TGA--AAGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
* * *
3509731 TTTTTTTTGGATGAAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCGAAGTTCATCCCTTAAAT
66 TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
* *
3509796 AAGACAAGCATTGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
131 AAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
** * *
3509861 CTTCATTAGGGCACATGGCATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTTTCAACATTTT
196 CTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTTCACCATTTT
*
3509926 TGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
261 TGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
* *
3509991 TTTAGGATTAGGCACCATAGACATAATCTTATCATTAGGATAAACCATATTGATGCTTTTGTTCC
326 TTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTC
* *
3510056 GCAAGACATGCTTTTTTCCCACAAATTATTGTAATGTCTAAGTTTGCGCCTCAAATGAGACAAAC
391 GCAAGAAATGCTTTTTTCCCACAAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAAC
3510121 ATTGATTCTAGTGATGATCT
456 ATTGATTCTAGTGATGATCT
* *
3510141 TCATTCATTTTGTGATTAGGCACCACAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
* *
3510206 TTTTTTTTGGATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTAATCCCTTAAAT
66 TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
* * *
3510271 AAAACAAGCACCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
131 AAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
* * * * *
3510336 CTTCATTAGGATACATGGCATTGATACTTTGGTGTCACAAGAAAAGCTTTTCTTTCCATCATTAT
196 CTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTTCACCATTTT
3510401 TGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
261 TGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
*
3510466 TTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATTTTGATGCTTTTGTTTC
326 TTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTC
*
3510531 GCAAGAAATGCTTTTTTCCCACAAATTATTGTAATGTCTAAGTTTGCGCCTCAAATGAGACAAAC
391 GCAAGAAATGCTTTTTTCCCACAAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAAC
3510596 ATTGATTCTAGTGATGATCT
456 ATTGATTCTAGTGATGATCT
3510616 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATG--
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
* * *
3510679 -TTTTTTTGGATGGAAATCTTTTCTTTGCTTTATTTTCTTGAAAATCAAAGTTCATCCTTTAAAT
66 TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
* * * *
3510743 AAGTCAAGCATCGATTCCCGCAACAGTCTCCGTTCCTTTCAAGATGGGAAGCCAAAACACATTCC
131 AAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
* *
3510808 CTTCATTAGGATACATGGCATTGATGCTTTGGTGTCTCCAGAAAAGCTTTTCTTTTCACCATTTT
196 CTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTTCACCATTTT
*
3510873 TGATAGAATCAAAGTTTGCTTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
261 TGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
3510938 TTTAGGA-TAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTC
326 TTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTC
* * *
3511002 GCAAGAAAGGCTTTTTTCCCA-ACAATTATTGTAAAGTCTTAGTTTGTGCCTCAAATGAGACAAA
391 GCAAGAAATGCTTTTTTCCCACA-AATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAA
*
3511066 CATTGATTCTGGTGATGATCT
455 CATTGATTCTAGTGATGATCT
3511087 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGA-
3511152 TTTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAA
65 -TTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAA
**
3511217 ATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATTAAGAAGCCAAAACACAT
129 ATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACACAT
* * * *
3511282 TCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAAAAAAGCTTTTCTTTTCTCCGT
193 TCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTTCACCAT
** * * * *
3511347 TTTTGATAGAATCAAAGTTTATCTCTTATATAAGACAAACATGAATACGCATACAAATCCCCATT
258 TTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATT
* * * ** *
3511412 CTTTTCTT--GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATTATATTGATGCTTTG
323 -TTTT-TTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTT
** * * ** * *
3511475 GATTT-GCAAGAAATGCTTTTTTCCTGCCAATTTTTGTAGGGTCTAAGTTCGTGCCTCAAATGAG
386 G-TTTCGCAAGAAATGCTTTTTTCCCACAAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAG
* * *
3511539 GCAAACATGGATTCTAGTGAT-AACT
450 ACAAACATTGATTCTAGTGATGATCT
* * * * *
3511564 TGATTCATTTTGTGATTAAGCACTAGAAAGACATTCTCC-TCATTAGGATAAATGATATTGATAA
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCTTCATTAGGATAAATGATATTGATGA
** * * * * *
3511628 TTTGCTTTTGCCA-AGAAATCTTATCTTTGCCTTATTTTCCTT-AAAATCAAAATTCGTTCCTTA
65 TTTTTTTTTG-CATGGAAATCTTTTCTTTGCCTTATTTT-CTTGAAAATCAAAGTTCATCCCTTA
* * * * *
3511691 AATAAGATAAGCATCGATTCTCATAATAGTCTCCTTTCCTTTCAAGATTGGGAAACCAAAACACA
128 AATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACACA
*
3511756 TTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTT
192 TTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTT
3511810 CCTGATGACA
Statistics
Matches: 1972, Mismatches: 142, Indels: 47
0.91 0.07 0.02
Matches are distributed among these distances:
465 5 0.00
466 241 0.12
468 30 0.02
469 84 0.04
470 11 0.01
471 263 0.13
472 254 0.13
473 3 0.00
475 656 0.33
476 106 0.05
477 194 0.10
478 120 0.06
479 5 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (475 bp):
TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
AAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
CTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTTCACCATTTT
TGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
TTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTC
GCAAGAAATGCTTTTTTCCCACAAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAAC
ATTGATTCTAGTGATGATCT
Found at i:3513373 original size:158 final size:156
Alignment explanation
Indices: 3512716--3515292 Score: 846
Period size: 158 Copynumber: 16.3 Consensus size: 156
3512706 TTCATTTTGT
* * * * * *
3512716 GATTAGGCACTATAAACACATTCTCC-TCCTTAGGATAAATGGTATTGATGATTTTCTTTTACAT
1 GATTAGGCACCATAAACACATTC-CCTTCATTAGGATAAATGATATTGATGCTTTTTTTTTGCA-
* **
3512780 AG-AAATCTTTTCTTTGCC-CTATTTTCCTT-AAAATCAAAGTTCTTCCCTTAAATAAGACACGC
64 AGAAAATCTTTTCTTTGCCTC-ATTTT-ATTGAAAATCAAAG-T-TTCCCTTAAATAAGACAAAC
* ** * *
3512842 ATCGATTCTCATAATAGTCTCCACTCCTTTCAA
125 ATTGATTCTCGCAA-AGTCTCCATTCCTTTTAA
* * * * ** * ** * *
3512875 GA-TGGGAAGCCA-AAACACATTCCCTTCATTAGAATACATGGCATTGATACTTTGGTGTCGCAA
1 GATTAGGCA-CCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAA
* * *
3512938 GAAAAGCTTTTCTTT-CCACCA-TTT-TTGATAGAATCAAAGTTTGCCTCTTATATAAG--AAAC
65 GAAAATCTTTTCTTTGCC-TCATTTTATTGA-A-AATCAAAGTTT-CC-CTTAAATAAGACAAAC
* * * *
3512998 ATT-ACTACTCATGCAAA-TCCCCATT-TTTTTAG
125 ATTGA-TTCTC--GCAAAGTCTCCATTCCTTTTAA
* * * * ** * * *
3513030 GATTAGGCACCATAGACATAAT-CTTCTCATTAGGATAAACCATATTGATGCTCTTGTTTCGCAA
1 GATTAGGCACCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAA
* * ** * * * *
3513094 GAAAAGC-TTT-TTT-CC-AAAATTATTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAAACAT
65 GAAAATCTTTTCTTTGCCTCATTTTATTG-AAAATCAAAGTTT-C-CCTTAAATAAGACAAACAT
* * ** * * * *
3513155 TAATTCTAGTGATGATATTCATTCATTTT--
127 TGATTCTCGCAAAG-TCTCCATTCCTTTTAA
* * * * *
3513184 GA--AAGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGGATG
1 GATTAGGCACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAAG
* * * *
3513247 AAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCGAAGTTCATCCCTTAAATAAGACAAGCATTG
66 AAAATCTTTTCTTTGCCTCATTTTATTGAAAATCAAAGTT--TCCCTTAAATAAGACAAACATTG
*
3513312 ATTCTCGCAACAGTCTCCATTCCTTTCAA
129 ATTCTCGCAA-AGTCTCCATTCCTTTTAA
* * ** * ** * * *
3513341 GA-TGGGAAGCCA-AAACACATTCCCTTCATTAGGGCACATGGCATTGATGCTTTGGTGTCT-CA
1 GATTAGGCA-CCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTT-TTTTTTGCA
* * ** * *
3513403 AGAAAAGCTTTTCTTTTCAACA-TTT-TTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAAC
64 AGAAAATCTTTTCTTTGCCTCATTTTATTGA-A-AATCAAAG-TT-TCCCTTAAATAAGACAAAC
* * ** *
3513466 ATT-ACTACTCATGCAAA-TCCCCATTTTTTTTAG
125 ATTGA-TTCTC--GCAAAGTCTCCATTCCTTTTAA
* * * * ** * **
3513499 GATTAGGCACCATAGACATAAT-CTTATCATTAGGATAAACCATATTGATGCTTTTGTTCCGCAA
1 GATTAGGCACCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAA
* * * ** ** * * *
3513563 G-ACATGC-TTT-TTTCCCACAAATTATTGTAATGTCTAAGTTTGCGCCTCAAATGAGACAAACA
65 GAAAAT-CTTTTCTTTGCCTCATTTTATTG-AAAATCAAAGTTT-C-CCTTAAATAAGACAAACA
* ** * * * **
3513625 TTGATTCTAGTGATGATCTTCATTCATTTTGT
126 TTGATTCTCGCAAAG-TCTCCATTCCTTTTAA
* * * *
3513657 GATTAGGCACCACAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGGATG
1 GATTAGGCACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAAG
* * * * * **
3513722 GAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTAATCCCTTAAATAAAACAAGCACCG
66 AAAATCTTTTCTTTGCCTCATTTTATTGAAAATCAAAGTT--TCCCTTAAATAAGACAAACATTG
*
3513787 ATTCTCGCAACAGTCTCCATTCCTTTCAA
129 ATTCTCGCAA-AGTCTCCATTCCTTTTAA
* * * ** * ** * **
3513816 GA-TGGGAAGCCA-AAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCACAA
1 GATTAGGCA-CCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAA
* *
3513879 GAAAAGCTTTTCTTT-CCATCA--TTATTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAAC
65 GAAAATCTTTTCTTTGCC-TCATTTTATTGA-A-AATCAAAGTTT-CC-CTTAAATAAGACAAAC
* * ** *
3513941 ATT-ACTACTCATGCAAA-TCCCCATTTTTTTTAG
125 ATTGA-TTCTC--GCAAAGTCTCCATTCCTTTTAA
* * * * ** * * *
3513974 GATTAGGCACCATAGACATAAT-CTTCTCATTAGGATAAACCATTTTGATGCTTTTGTTTCGCAA
1 GATTAGGCACCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAA
* * ** ** * * *
3514038 G-AAATGC-TTT-TTTCCCACAAATTATTGTAATGTCTAAGTTTGCGCCTCAAATGAGACAAACA
65 GAAAAT-CTTTTCTTTGCCTCATTTTATTG-AAAATCAAAGTTT-C-CCTTAAATAAGACAAACA
* ** * * * **
3514100 TTGATTCTAGTGATGATCTTCATTCATTTTGT
126 TTGATTCTCGCAAAG-TCTCCATTCCTTTTAA
* * *
3514132 GATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATG---TTTTTTTGGATG
1 GATTAGGCACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAAG
* * * * * * *
3514194 GAAATCTTTTCTTTGCTTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAATAAGTCAAGCATCG
66 AAAATCTTTTCTTTGCCTCATTTTATTGAAAATCAAAGTT--TCCCTTAAATAAGACAAACATTG
* * *
3514259 ATTCCCGCAACAGTCTCCGTTCCTTTCAA
129 ATTCTCGCAA-AGTCTCCATTCCTTTTAA
* * * ** * * * *
3514288 GA-TGGGAAGCCA-AAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCT-CC
1 GATTAGGCA-CCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTT-TTTTTTGCA
* * * *
3514350 AGAAAAGCTTTTCTTTTCAC-CA-TTT-TTGATAGAATCAAAGTTTGCTTCTTATATAAGACAAA
64 AGAAAATCTTTTCTTTGC-CTCATTTTATTGA-A-AATCAAAGTTT-C-CCTTAAATAAGACAAA
* * ** *
3514412 CATT-ACTACTCATGCAAA-TCCCCATTTTTTTTAG
124 CATTGA-TTCTC--GCAAAGTCTCCATTCCTTTTAA
* * * * ** * *
3514446 GA-TAGGCACCATAGACATAAT-CTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAA
1 GATTAGGCACCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAA
** * * * * ** * * *
3514509 GAAAGGC-TTT-TTTCCCAACA-ATTATTGTAAAGTCTTAGTTTGTGCCTCAAATGAGACAAACA
65 GAAAATCTTTTCTTTGCC-TCATTTTATTG-AAAATCAAAG-TT-TCCCTTAAATAAGACAAACA
* ** * * * **
3514571 TTGATTCTGGTGATGATCTTCATTCATTTTGT
126 TTGATTCTCGCAAAG-TCTCCATTCCTTTTAA
* *
3514603 GATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTTTGCA
1 GATTAGGCACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATG--CTTTTTTTTTGCA
* * * * *
3514668 TGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGCAT
64 AGAAAATCTTTTCTTTGCCTCATTTTATTGAAAATCAAAGTT--TCCCTTAAATAAGACAAACAT
* * *
3514733 CGATTCTCACAACAGTCTCCATTCCTTTCAA
127 TGATTCTCGCAA-AGTCTCCATTCCTTTTAA
* * * * ** ** * *
3514764 GATTAAGAAGCCA-AAACACATTCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAA
1 GATTAGGCA-CCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAA
* * * ** * *
3514828 AAAAAGCTTTTCTTT-TCTCCGTTT-TTGATAGAATCAAAGTTTATCTCTTATATAAGACAAACA
65 GAAAATCTTTTCTTTGCCTCATTTTATTGA-A-AATCAAAG-TT-TCCCTTAAATAAGACAAACA
* * * * **
3514891 -TGAAT-ACGCATACAAATCCCCATT-CTTTTCTT
126 TTGATTCTCGC--A-AAGTCTCCATTCCTTTT-AA
* * * * * ***
3514923 GATTAGGCACCATAAACATAGT-CTTCTCATTAGGATACATTATATTGATGCTTTGGATTTGCAA
1 GATTAGGCACCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAA
** * *** * * * * *
3514987 GAAAGGC-TTT-TTT-CCTGCCAATTT-TTGTAGGGTCTAAGTTCGTGCCTCAAATGAGGCAAAC
65 GAAAATCTTTTCTTTGCCT--CATTTTATTG-AAAATCAAAGTT--TCCCTTAAATAAGACAAAC
* * * ** * **
3515048 ATGGATTCTAGTGATAA--CTTGATTCATTTTGT
125 ATTGATTCTCG-CA-AAGTCTCCATTCCTTTTAA
* * * * ** **
3515080 GATTAAGCACTAGAAAGACATTCTCC-TCATTAGGATAAATGATATTGATAATTTGCTTTTGCCA
1 GATTAGGCACCATAAACACATTC-CCTTCATTAGGATAAATGATATTGATGCTTTTTTTTTG-CA
* * * * * * *
3515144 AG-AAATCTTATCTTTGCCTTATTTTCCTT-AAAATCAAAATTCGTTCCTTAAATAAGATAAGCA
64 AGAAAATCTTTTCTTTGCCTCATTTT-ATTGAAAATCAAAGTT--TCCCTTAAATAAGACAAACA
* ** * *
3515207 TCGATTCTCATAATAGTCTCCTTTCCTTTCAA
126 TTGATTCTCGCAA-AGTCTCCATTCCTTTTAA
* * * *
3515239 GATTGGGAAACCA-AAACACATTCCCTTCATTAGGATACATGACATTGATGCTTT
1 GATTAGG-CACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTT
3515293 GGTGTCGCAA
Statistics
Matches: 1730, Mismatches: 530, Indels: 316
0.67 0.21 0.12
Matches are distributed among these distances:
152 50 0.03
153 27 0.02
154 15 0.01
155 129 0.07
156 153 0.09
157 178 0.10
158 684 0.40
159 338 0.20
160 56 0.03
161 87 0.05
162 13 0.01
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (156 bp):
GATTAGGCACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAAG
AAAATCTTTTCTTTGCCTCATTTTATTGAAAATCAAAGTTTCCCTTAAATAAGACAAACATTGAT
TCTCGCAAAGTCTCCATTCCTTTTAA
Found at i:3513796 original size:475 final size:475
Alignment explanation
Indices: 3512703--3515509 Score: 4059
Period size: 475 Copynumber: 5.9 Consensus size: 475
3512693 AGTTTGTGCC
* *
3512703 TCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC-TCCTTAGGATAAATGGTATTGATGA
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCTTCATTAGGATAAATGATATTGATGA
* * * * *
3512767 TTTTCTTTTACATAGAAATCTTTTCTTTGCCCTATTTTCCTT-AAAATCAAAGTTCTTCCCTTAA
65 TTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTT-CTTGAAAATCAAAGTTCATCCCTTAA
* * * *
3512831 ATAAGACACGCATCGATTCTCATAATAGTCTCCACTCCTTTCAAGATGGGAAGCCAAAACACATT
129 ATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATT
* *
3512896 CCCTTCATTAGAATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATT
194 CCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATT
3512961 TTTGATAGAATCAAAGTTTGCCTCTTATATAAG--AAACATTACTACTCATGCAAATCCCCA-TT
259 TTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTT
*
3513023 TTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTCTTGTT
324 TTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTT
* *
3513088 TCGCAAGAAAAGCTTTTTT-CCA-AAATTATTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAA
389 TCGCAAGAAATGCTTTTTTCCCACAAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAA
* *
3513151 ACATTAATTCTAGTGATGATAT
454 ACATTGATTCTAGTGATGATCT
*
3513173 TCATTCA-TTT-TGA--AAGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
* * *
3513234 TTTTTTTTGGATGAAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCGAAGTTCATCCCTTAAAT
66 TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
* *
3513299 AAGACAAGCATTGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
131 AAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
** * * *
3513364 CTTCATTAGGGCACATGGCATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTTTCAACATTTT
196 CTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
*
3513429 TGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
261 TGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
* *
3513494 TTTAGGATTAGGCACCATAGACATAATCTTATCATTAGGATAAACCATATTGATGCTTTTGTTCC
326 TTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTC
* *
3513559 GCAAGACATGCTTTTTTCCCACAAATTATTGTAATGTCTAAGTTTGCGCCTCAAATGAGACAAAC
391 GCAAGAAATGCTTTTTTCCCACAAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAAC
3513624 ATTGATTCTAGTGATGATCT
456 ATTGATTCTAGTGATGATCT
* *
3513644 TCATTCATTTTGTGATTAGGCACCACAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
* *
3513709 TTTTTTTTGGATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTAATCCCTTAAAT
66 TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
* * *
3513774 AAAACAAGCACCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
131 AAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
* * * *
3513839 CTTCATTAGGATACATGGCATTGATACTTTGGTGTCACAAGAAAAGCTTTTCTTTCCATCATTAT
196 CTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
3513904 TGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
261 TGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
*
3513969 TTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATTTTGATGCTTTTGTTTC
326 TTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTC
*
3514034 GCAAGAAATGCTTTTTTCCCACAAATTATTGTAATGTCTAAGTTTGCGCCTCAAATGAGACAAAC
391 GCAAGAAATGCTTTTTTCCCACAAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAAC
3514099 ATTGATTCTAGTGATGATCT
456 ATTGATTCTAGTGATGATCT
3514119 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATG--
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
* *
3514182 -TTTTTTTGGATGGAAATCTTTTCTTTGCTTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
66 TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
* * * *
3514246 AAGTCAAGCATCGATTCCCGCAACAGTCTCCGTTCCTTTCAAGATGGGAAGCCAAAACACATTCC
131 AAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
* * *
3514311 CTTCATTAGGATACATGGCATTGATGCTTTGGTGTCTCCAGAAAAGCTTTTCTTTTCACCATTTT
196 CTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
*
3514376 TGATAGAATCAAAGTTTGCTTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
261 TGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
3514441 TTTAGGA-TAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTC
326 TTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTC
* * *
3514505 GCAAGAAAGGCTTTTTTCCCA-ACAATTATTGTAAAGTCTTAGTTTGTGCCTCAAATGAGACAAA
391 GCAAGAAATGCTTTTTTCCCACA-AATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAA
*
3514569 CATTGATTCTGGTGATGATCT
455 CATTGATTCTAGTGATGATCT
3514590 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGA-
3514655 TTTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAA
65 -TTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAA
**
3514720 ATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATTAAGAAGCCAAAACACAT
129 ATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACACAT
* * * * *
3514785 TCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAAAAAAGCTTTTCTTTTCTCCGT
193 TCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCAT
** * * * *
3514850 TTTTGATAGAATCAAAGTTTATCTCTTATATAAGACAAACATGAATACGCATACAAATCCCCATT
258 TTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATT
* * * ** *
3514915 CTTTTCTT--GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATTATATTGATGCTTTG
323 -TTTT-TTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTT
* ** * * ** * *
3514978 GATTT-GCAAGAAAGGCTTTTTTCCTGCCAATTTTTGTAGGGTCTAAGTTCGTGCCTCAAATGAG
386 G-TTTCGCAAGAAATGCTTTTTTCCCACAAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAG
* * *
3515042 GCAAACATGGATTCTAGTGAT-AACT
450 ACAAACATTGATTCTAGTGATGATCT
* * * * *
3515067 TGATTCATTTTGTGATTAAGCACTAGAAAGACATTCTCC-TCATTAGGATAAATGATATTGATAA
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCTTCATTAGGATAAATGATATTGATGA
** * * * * *
3515131 TTTGCTTTTGCCA-AGAAATCTTATCTTTGCCTTATTTTCCTT-AAAATCAAAATTCGTTCCTTA
65 TTTTTTTTTG-CATGGAAATCTTTTCTTTGCCTTATTTT-CTTGAAAATCAAAGTTCATCCCTTA
* * * * *
3515194 AATAAGATAAGCATCGATTCTCATAATAGTCTCCTTTCCTTTCAAGATTGGGAAACCAAAACACA
128 AATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACACA
* * * *
3515259 TTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTCCTTTCCATCG
192 TTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCA
* * * * ***
3515324 TTTTTGATAGAATCAAGGTTTGCCTCTCATATAAGACAAACATGAATACTCAAATAAATCCCCAT
257 TTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCAT
* * ** * * * *
3515389 TCTTTTCTT--GATTAGGCATCATAAACATAGCCTTCTGATTAGGATAGACGATATTGACG-TTT
322 T-TTTT-TTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTT
*** * * *
3515451 TAGTTAT-GCAAG-AATGGGATTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCA
385 T-GTT-TCGCAAGAAATGCTTTTTTCCCACAAATTATTGTAAAGTCTAAGTTTGCGCCTCA
3515510 TTCATTTTGT
Statistics
Matches: 2143, Mismatches: 166, Indels: 52
0.91 0.07 0.02
Matches are distributed among these distances:
465 5 0.00
466 242 0.11
468 30 0.01
469 84 0.04
470 11 0.01
471 263 0.12
472 255 0.12
473 3 0.00
474 43 0.02
475 780 0.36
476 107 0.05
477 194 0.09
478 121 0.06
479 5 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (475 bp):
TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
AAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
CTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
TGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
TTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTC
GCAAGAAATGCTTTTTTCCCACAAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAAC
ATTGATTCTAGTGATGATCT
Found at i:3516177 original size:158 final size:156
Alignment explanation
Indices: 3515520--3518096 Score: 837
Period size: 158 Copynumber: 16.3 Consensus size: 156
3515510 TTCATTTTGT
* * * * * *
3515520 GATTAGGCACTATAAACACATTCTCC-TCCTTAGGATAAATGGTATTGATGATTTTCTTTTACAT
1 GATTAGGCACCATAAACACATTC-CCTTCATTAGGATAAATGATATTGATGCTTTTTTTTTGCA-
* **
3515584 AG-AAATCTTTTCTTTGCC-CTATTTTCCTT-AAAATCAAAGTTCTTCCCTTAAATAAGACACGC
64 AGAAAATCTTTTCTTTGCCTC-ATTTT-ATTGAAAATCAAAG-T-TTCCCTTAAATAAGACAAAC
* ** * *
3515646 ATCGATTCTCATAATAGTCTCCACTCCTTTCAA
125 ATTGATTCTCGCAA-AGTCTCCATTCCTTTTAA
* * * * ** * ** * *
3515679 GA-TGGGAAGCCA-AAACACATTCCCTTCATTAGAATACATGGCATTGATACTTTGGTGTCGCAA
1 GATTAGGCA-CCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAA
* * *
3515742 GAAAAGCTTTTCTTT-CCACCA-TTT-TTGATAGAATCAAAGTTTGCCTCTTATATAAG--AAAC
65 GAAAATCTTTTCTTTGCC-TCATTTTATTGA-A-AATCAAAGTTT-CC-CTTAAATAAGACAAAC
* * * *
3515802 ATT-ACTACTCATGCAAA-TCCCCATT-TTTTTAG
125 ATTGA-TTCTC--GCAAAGTCTCCATTCCTTTTAA
* * * * ** * * *
3515834 GATTAGGCACCATAGACATAAT-CTTCTCATTAGGATAAACCATATTGATGCTCTTGTTTCGCAA
1 GATTAGGCACCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAA
* * ** * * * *
3515898 GAAAAGC-TTT-TTT-CC-AAAATTATTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAAACAT
65 GAAAATCTTTTCTTTGCCTCATTTTATTG-AAAATCAAAGTTT-C-CCTTAAATAAGACAAACAT
* * ** * * * *
3515959 TAATTCTAGTGATGATATTCATTCATTTT--
127 TGATTCTCGCAAAG-TCTCCATTCCTTTTAA
* * * * *
3515988 GA--AAGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGGATG
1 GATTAGGCACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAAG
* * * *
3516051 AAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCGAAGTTCATCCCTTAAATAAGACAAGCATTG
66 AAAATCTTTTCTTTGCCTCATTTTATTGAAAATCAAAGTT--TCCCTTAAATAAGACAAACATTG
*
3516116 ATTCTCGCAACAGTCTCCATTCCTTTCAA
129 ATTCTCGCAA-AGTCTCCATTCCTTTTAA
* * ** * ** * * *
3516145 GA-TGGGAAGCCA-AAACACATTCCCTTCATTAGGGCACATGGCATTGATGCTTTGGTGTCT-CA
1 GATTAGGCA-CCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTT-TTTTTTGCA
* * ** * *
3516207 AGAAAAGCTTTTCTTTTCAACA-TTT-TTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAAC
64 AGAAAATCTTTTCTTTGCCTCATTTTATTGA-A-AATCAAAG-TT-TCCCTTAAATAAGACAAAC
* * ** *
3516270 ATT-ACTACTCATGCAAA-TCCCCATTTTTTTTAG
125 ATTGA-TTCTC--GCAAAGTCTCCATTCCTTTTAA
* * * * ** * **
3516303 GATTAGGCACCATAGACATAAT-CTTATCATTAGGATAAACCATATTGATGCTTTTGTTCCGCAA
1 GATTAGGCACCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAA
* * * ** ** * * *
3516367 G-ACATGC-TTT-TTTCCCACAAATTATTGTAATGTCTAAGTTTGCGCCTCAAATGAGACAAACA
65 GAAAAT-CTTTTCTTTGCCTCATTTTATTG-AAAATCAAAGTTT-C-CCTTAAATAAGACAAACA
* ** * * * **
3516429 TTGATTCTAGTGATGATCTTCATTCATTTTGT
126 TTGATTCTCGCAAAG-TCTCCATTCCTTTTAA
* * * *
3516461 GATTAGGCACCACAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGGATG
1 GATTAGGCACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAAG
* * * * * **
3516526 GAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTAATCCCTTAAATAAAACAAGCACCG
66 AAAATCTTTTCTTTGCCTCATTTTATTGAAAATCAAAGTT--TCCCTTAAATAAGACAAACATTG
*
3516591 ATTCTCGCAACAGTCTCCATTCCTTTCAA
129 ATTCTCGCAA-AGTCTCCATTCCTTTTAA
* * * ** * ** * **
3516620 GA-TGGGAAGCCA-AAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCACAA
1 GATTAGGCA-CCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAA
* *
3516683 GAAAAGCTTTTCTTT-CCATCA--TTATTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAAC
65 GAAAATCTTTTCTTTGCC-TCATTTTATTGA-A-AATCAAAGTTT-CC-CTTAAATAAGACAAAC
* * ** *
3516745 ATT-ACTACTCATGCAAA-TCCCCATTTTTTTTAG
125 ATTGA-TTCTC--GCAAAGTCTCCATTCCTTTTAA
* * * * ** * * *
3516778 GATTAGGCACCATAGACATAAT-CTTCTCATTAGGATAAACCATTTTGATGCTTTTGTTTCGCAA
1 GATTAGGCACCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAA
* * ** ** * * *
3516842 G-AAATGC-TTT-TTTCCCACAAATTATTGTAATGTCTAAGTTTGCGCCTCAAATGAGACAAACA
65 GAAAAT-CTTTTCTTTGCCTCATTTTATTG-AAAATCAAAGTTT-C-CCTTAAATAAGACAAACA
* ** * * * **
3516904 TTGATTCTAGTGATGATCTTCATTCATTTTGT
126 TTGATTCTCGCAAAG-TCTCCATTCCTTTTAA
* * *
3516936 GATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATG---TTTTTTTGGATG
1 GATTAGGCACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAAG
* * * * * * *
3516998 GAAATCTTTTCTTTGCTTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAATAAGTCAAGCATCG
66 AAAATCTTTTCTTTGCCTCATTTTATTGAAAATCAAAGTT--TCCCTTAAATAAGACAAACATTG
* * *
3517063 ATTCCCGCAACAGTCTCCGTTCCTTTCAA
129 ATTCTCGCAA-AGTCTCCATTCCTTTTAA
* * * ** * * * *
3517092 GA-TGGGAAGCCA-AAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCT-CC
1 GATTAGGCA-CCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTT-TTTTTTGCA
* * * *
3517154 AGAAAAGCTTTTCTTTTCAC-CA-TTT-TTGATAGAATCAAAGTTTGCTTCTTATATAAGACAAA
64 AGAAAATCTTTTCTTTGC-CTCATTTTATTGA-A-AATCAAAGTTT-C-CCTTAAATAAGACAAA
* * ** *
3517216 CATT-ACTACTCATGCAAA-TCCCCATTTTTTTTAG
124 CATTGA-TTCTC--GCAAAGTCTCCATTCCTTTTAA
* * * * ** * *
3517250 GA-TAGGCACCATAGACATAAT-CTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAA
1 GATTAGGCACCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAA
** * * * * ** * * *
3517313 GAAAGGC-TTT-TTTCCCAACA-ATTATTGTAAAGTCTTAGTTTGTGCCTCAAATGAGACAAACA
65 GAAAATCTTTTCTTTGCC-TCATTTTATTG-AAAATCAAAG-TT-TCCCTTAAATAAGACAAACA
* ** * * * **
3517375 TTGATTCTGGTGATGATCTTCATTCATTTTGT
126 TTGATTCTCGCAAAG-TCTCCATTCCTTTTAA
* *
3517407 GATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTTTGCA
1 GATTAGGCACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATG--CTTTTTTTTTGCA
* * * * *
3517472 TGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGCAT
64 AGAAAATCTTTTCTTTGCCTCATTTTATTGAAAATCAAAGTT--TCCCTTAAATAAGACAAACAT
* * *
3517537 CGATTCTCACAACAGTCTCCATTCCTTTCAA
127 TGATTCTCGCAA-AGTCTCCATTCCTTTTAA
* * * * ** ** * *
3517568 GATTAAGAAGCCA-AAACACATTCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAA
1 GATTAGGCA-CCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAA
* * * ** * *
3517632 AAAAAGCTTTTCTTT-TCTCCGTTT-TTGATAGAATCAAAGTTTATCTCTTATATAAGACAAACA
65 GAAAATCTTTTCTTTGCCTCATTTTATTGA-A-AATCAAAG-TT-TCCCTTAAATAAGACAAACA
* * * * **
3517695 -TGAAT-ACGCATACAAATCCCCATT-CTTTTCTT
126 TTGATTCTCGC--A-AAGTCTCCATTCCTTTT-AA
* * * * * ***
3517727 GATTAGGCACCATAAACATAGT-CTTCTCATTAGGATACATTATATTGATGCTTTGGATTTGCAA
1 GATTAGGCACCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAA
** * *** * * * * *
3517791 GAAAGGC-TTT-TTT-CCTGCCAATTT-TTGTAGGGTCTAAGTTCGTGCCTCAAATGAGGCAAAC
65 GAAAATCTTTTCTTTGCCT--CATTTTATTG-AAAATCAAAGTT--TCCCTTAAATAAGACAAAC
* * * ** * **
3517852 ATGGATTCTAGTGATAA--CTTGATTCATTTTGT
125 ATTGATTCTCG-CA-AAGTCTCCATTCCTTTTAA
* * * * ** **
3517884 GATTAAGCACTAGAAAGACATTCTCC-TCATTAGGATAAATGATATTGATAATTTGCTTTTGCCA
1 GATTAGGCACCATAAACACATTC-CCTTCATTAGGATAAATGATATTGATGCTTTTTTTTTG-CA
* * * * * * *
3517948 AG-AAATCTTATCTTTGCCTTATTTTCCTT-AAAATCAAAATTCGTTCCTTAAATAAGATAAGCA
64 AGAAAATCTTTTCTTTGCCTCATTTT-ATTGAAAATCAAAGTT--TCCCTTAAATAAGACAAACA
* ** * * *
3518011 TCGATTCTCATAATAGTATCCTTTCCTTTCAA
126 TTGATTCTCGCAA-AGTCTCCATTCCTTTTAA
* * * *
3518043 GATTGGGAAACCA-AAACACATTCCCTTCATTAGGATACATGACATTGATGCTTT
1 GATTAGG-CACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTT
3518097 GGTGTCGCAA
Statistics
Matches: 1729, Mismatches: 531, Indels: 316
0.67 0.21 0.12
Matches are distributed among these distances:
152 50 0.03
153 27 0.02
154 15 0.01
155 129 0.07
156 153 0.09
157 178 0.10
158 684 0.40
159 337 0.19
160 56 0.03
161 87 0.05
162 13 0.01
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (156 bp):
GATTAGGCACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAAG
AAAATCTTTTCTTTGCCTCATTTTATTGAAAATCAAAGTTTCCCTTAAATAAGACAAACATTGAT
TCTCGCAAAGTCTCCATTCCTTTTAA
Found at i:3516600 original size:475 final size:475
Alignment explanation
Indices: 3515507--3518313 Score: 4050
Period size: 475 Copynumber: 5.9 Consensus size: 475
3515497 AGTTTGTGCC
* *
3515507 TCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC-TCCTTAGGATAAATGGTATTGATGA
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCTTCATTAGGATAAATGATATTGATGA
* * * * *
3515571 TTTTCTTTTACATAGAAATCTTTTCTTTGCCCTATTTTCCTT-AAAATCAAAGTTCTTCCCTTAA
65 TTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTT-CTTGAAAATCAAAGTTCATCCCTTAA
* * * *
3515635 ATAAGACACGCATCGATTCTCATAATAGTCTCCACTCCTTTCAAGATGGGAAGCCAAAACACATT
129 ATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATT
* *
3515700 CCCTTCATTAGAATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATT
194 CCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATT
3515765 TTTGATAGAATCAAAGTTTGCCTCTTATATAAG--AAACATTACTACTCATGCAAATCCCCA-TT
259 TTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTT
*
3515827 TTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTCTTGTT
324 TTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTT
* *
3515892 TCGCAAGAAAAGCTTTTTT-CCA-AAATTATTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAA
389 TCGCAAGAAATGCTTTTTTCCCACAAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAA
* *
3515955 ACATTAATTCTAGTGATGATAT
454 ACATTGATTCTAGTGATGATCT
*
3515977 TCATTCA-TTT-TGA--AAGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
* * *
3516038 TTTTTTTTGGATGAAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCGAAGTTCATCCCTTAAAT
66 TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
* *
3516103 AAGACAAGCATTGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
131 AAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
** * * *
3516168 CTTCATTAGGGCACATGGCATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTTTCAACATTTT
196 CTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
*
3516233 TGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
261 TGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
* *
3516298 TTTAGGATTAGGCACCATAGACATAATCTTATCATTAGGATAAACCATATTGATGCTTTTGTTCC
326 TTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTC
* *
3516363 GCAAGACATGCTTTTTTCCCACAAATTATTGTAATGTCTAAGTTTGCGCCTCAAATGAGACAAAC
391 GCAAGAAATGCTTTTTTCCCACAAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAAC
3516428 ATTGATTCTAGTGATGATCT
456 ATTGATTCTAGTGATGATCT
* *
3516448 TCATTCATTTTGTGATTAGGCACCACAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
* *
3516513 TTTTTTTTGGATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTAATCCCTTAAAT
66 TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
* * *
3516578 AAAACAAGCACCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
131 AAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
* * * *
3516643 CTTCATTAGGATACATGGCATTGATACTTTGGTGTCACAAGAAAAGCTTTTCTTTCCATCATTAT
196 CTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
3516708 TGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
261 TGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
*
3516773 TTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATTTTGATGCTTTTGTTTC
326 TTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTC
*
3516838 GCAAGAAATGCTTTTTTCCCACAAATTATTGTAATGTCTAAGTTTGCGCCTCAAATGAGACAAAC
391 GCAAGAAATGCTTTTTTCCCACAAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAAC
3516903 ATTGATTCTAGTGATGATCT
456 ATTGATTCTAGTGATGATCT
3516923 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATG--
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
* *
3516986 -TTTTTTTGGATGGAAATCTTTTCTTTGCTTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
66 TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
* * * *
3517050 AAGTCAAGCATCGATTCCCGCAACAGTCTCCGTTCCTTTCAAGATGGGAAGCCAAAACACATTCC
131 AAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
* * *
3517115 CTTCATTAGGATACATGGCATTGATGCTTTGGTGTCTCCAGAAAAGCTTTTCTTTTCACCATTTT
196 CTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
*
3517180 TGATAGAATCAAAGTTTGCTTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
261 TGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
3517245 TTTAGGA-TAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTC
326 TTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTC
* * *
3517309 GCAAGAAAGGCTTTTTTCCCA-ACAATTATTGTAAAGTCTTAGTTTGTGCCTCAAATGAGACAAA
391 GCAAGAAATGCTTTTTTCCCACA-AATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAA
*
3517373 CATTGATTCTGGTGATGATCT
455 CATTGATTCTAGTGATGATCT
3517394 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGA-
3517459 TTTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAA
65 -TTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAA
**
3517524 ATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATTAAGAAGCCAAAACACAT
129 ATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACACAT
* * * * *
3517589 TCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAAAAAAGCTTTTCTTTTCTCCGT
193 TCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCAT
** * * * *
3517654 TTTTGATAGAATCAAAGTTTATCTCTTATATAAGACAAACATGAATACGCATACAAATCCCCATT
258 TTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATT
* * * ** *
3517719 CTTTTCTT--GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATTATATTGATGCTTTG
323 -TTTT-TTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTT
* ** * * ** * *
3517782 GATTT-GCAAGAAAGGCTTTTTTCCTGCCAATTTTTGTAGGGTCTAAGTTCGTGCCTCAAATGAG
386 G-TTTCGCAAGAAATGCTTTTTTCCCACAAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAG
* * *
3517846 GCAAACATGGATTCTAGTGAT-AACT
450 ACAAACATTGATTCTAGTGATGATCT
* * * * *
3517871 TGATTCATTTTGTGATTAAGCACTAGAAAGACATTCTCC-TCATTAGGATAAATGATATTGATAA
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCTTCATTAGGATAAATGATATTGATGA
** * * * * *
3517935 TTTGCTTTTGCCA-AGAAATCTTATCTTTGCCTTATTTTCCTT-AAAATCAAAATTCGTTCCTTA
65 TTTTTTTTTG-CATGGAAATCTTTTCTTTGCCTTATTTT-CTTGAAAATCAAAGTTCATCCCTTA
* * * * * *
3517998 AATAAGATAAGCATCGATTCTCATAATAGTATCCTTTCCTTTCAAGATTGGGAAACCAAAACACA
128 AATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACACA
* * * *
3518063 TTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTCCTTTCCATCG
192 TTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCA
* * * * ***
3518128 TTTTTGATAGAATCAAGGTTTGCCTCTCATATAAGACAAACATGAATACTCAAATAAATCCCCAT
257 TTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCAT
* * ** * * * *
3518193 TCTTTTCTT--GATTAGGCATCATAAACATAGCCTTCTGATTAGGATAGACGATATTGACG-TTT
322 T-TTTT-TTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTT
*** * * *
3518255 TAGTTAT-GCAAG-AATGGGATTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCA
385 T-GTT-TCGCAAGAAATGCTTTTTTCCCACAAATTATTGTAAAGTCTAAGTTTGCGCCTCA
3518314 TTCATTTTGT
Statistics
Matches: 2142, Mismatches: 167, Indels: 52
0.91 0.07 0.02
Matches are distributed among these distances:
465 5 0.00
466 242 0.11
468 30 0.01
469 84 0.04
470 11 0.01
471 263 0.12
472 255 0.12
473 3 0.00
474 43 0.02
475 779 0.36
476 107 0.05
477 194 0.09
478 121 0.06
479 5 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (475 bp):
TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
AAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
CTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
TGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
TTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTC
GCAAGAAATGCTTTTTTCCCACAAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAAC
ATTGATTCTAGTGATGATCT
Found at i:3518981 original size:158 final size:156
Alignment explanation
Indices: 3518324--3520900 Score: 837
Period size: 158 Copynumber: 16.3 Consensus size: 156
3518314 TTCATTTTGT
* * * * * *
3518324 GATTAGGCACTATAAACACATTCTCC-TCCTTAGGATAAATGGTATTGATGATTTTCTTTTACAT
1 GATTAGGCACCATAAACACATTC-CCTTCATTAGGATAAATGATATTGATGCTTTTTTTTTGCA-
* **
3518388 AG-AAATCTTTTCTTTGCC-CTATTTTCCTT-AAAATCAAAGTTCTTCCCTTAAATAAGACACGC
64 AGAAAATCTTTTCTTTGCCTC-ATTTT-ATTGAAAATCAAAG-T-TTCCCTTAAATAAGACAAAC
* ** * *
3518450 ATCGATTCTCATAATAGTCTCCACTCCTTTCAA
125 ATTGATTCTCGCAA-AGTCTCCATTCCTTTTAA
* * * * ** * ** * *
3518483 GA-TGGGAAGCCA-AAACACATTCCCTTCATTAGAATACATGGCATTGATACTTTGGTGTCGCAA
1 GATTAGGCA-CCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAA
* * *
3518546 GAAAAGCTTTTCTTT-CCACCA-TTT-TTGATAGAATCAAAGTTTGCCTCTTATATAAG--AAAC
65 GAAAATCTTTTCTTTGCC-TCATTTTATTGA-A-AATCAAAGTTT-CC-CTTAAATAAGACAAAC
* * * *
3518606 ATT-ACTACTCATGCAAA-TCCCCATT-TTTTTAG
125 ATTGA-TTCTC--GCAAAGTCTCCATTCCTTTTAA
* * * * ** * * *
3518638 GATTAGGCACCATAGACATAAT-CTTCTCATTAGGATAAACCATATTGATGCTCTTGTTTCGCAA
1 GATTAGGCACCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAA
* * ** * * * *
3518702 GAAAAGC-TTT-TTT-CC-AAAATTATTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAAACAT
65 GAAAATCTTTTCTTTGCCTCATTTTATTG-AAAATCAAAGTTT-C-CCTTAAATAAGACAAACAT
* * ** * * * *
3518763 TAATTCTAGTGATGATATTCATTCATTTT--
127 TGATTCTCGCAAAG-TCTCCATTCCTTTTAA
* * * * *
3518792 GA--AAGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGGATG
1 GATTAGGCACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAAG
* * * *
3518855 AAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCGAAGTTCATCCCTTAAATAAGACAAGCATTG
66 AAAATCTTTTCTTTGCCTCATTTTATTGAAAATCAAAGTT--TCCCTTAAATAAGACAAACATTG
*
3518920 ATTCTCGCAACAGTCTCCATTCCTTTCAA
129 ATTCTCGCAA-AGTCTCCATTCCTTTTAA
* * ** * ** * * *
3518949 GA-TGGGAAGCCA-AAACACATTCCCTTCATTAGGGCACATGGCATTGATGCTTTGGTGTCT-CA
1 GATTAGGCA-CCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTT-TTTTTTGCA
* * ** * *
3519011 AGAAAAGCTTTTCTTTTCAACA-TTT-TTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAAC
64 AGAAAATCTTTTCTTTGCCTCATTTTATTGA-A-AATCAAAG-TT-TCCCTTAAATAAGACAAAC
* * ** *
3519074 ATT-ACTACTCATGCAAA-TCCCCATTTTTTTTAG
125 ATTGA-TTCTC--GCAAAGTCTCCATTCCTTTTAA
* * * * ** * **
3519107 GATTAGGCACCATAGACATAAT-CTTATCATTAGGATAAACCATATTGATGCTTTTGTTCCGCAA
1 GATTAGGCACCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAA
* * * ** ** * * *
3519171 G-ACATGC-TTT-TTTCCCACAAATTATTGTAATGTCTAAGTTTGCGCCTCAAATGAGACAAACA
65 GAAAAT-CTTTTCTTTGCCTCATTTTATTG-AAAATCAAAGTTT-C-CCTTAAATAAGACAAACA
* ** * * * **
3519233 TTGATTCTAGTGATGATCTTCATTCATTTTGT
126 TTGATTCTCGCAAAG-TCTCCATTCCTTTTAA
* * * *
3519265 GATTAGGCACCACAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGGATG
1 GATTAGGCACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAAG
* * * * * **
3519330 GAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTAATCCCTTAAATAAAACAAGCACCG
66 AAAATCTTTTCTTTGCCTCATTTTATTGAAAATCAAAGTT--TCCCTTAAATAAGACAAACATTG
*
3519395 ATTCTCGCAACAGTCTCCATTCCTTTCAA
129 ATTCTCGCAA-AGTCTCCATTCCTTTTAA
* * * ** * ** * **
3519424 GA-TGGGAAGCCA-AAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCACAA
1 GATTAGGCA-CCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAA
* *
3519487 GAAAAGCTTTTCTTT-CCATCA--TTATTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAAC
65 GAAAATCTTTTCTTTGCC-TCATTTTATTGA-A-AATCAAAGTTT-CC-CTTAAATAAGACAAAC
* * ** *
3519549 ATT-ACTACTCATGCAAA-TCCCCATTTTTTTTAG
125 ATTGA-TTCTC--GCAAAGTCTCCATTCCTTTTAA
* * * * ** * * *
3519582 GATTAGGCACCATAGACATAAT-CTTCTCATTAGGATAAACCATTTTGATGCTTTTGTTTCGCAA
1 GATTAGGCACCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAA
* * ** ** * * *
3519646 G-AAATGC-TTT-TTTCCCACAAATTATTGTAATGTCTAAGTTTGCGCCTCAAATGAGACAAACA
65 GAAAAT-CTTTTCTTTGCCTCATTTTATTG-AAAATCAAAGTTT-C-CCTTAAATAAGACAAACA
* ** * * * **
3519708 TTGATTCTAGTGATGATCTTCATTCATTTTGT
126 TTGATTCTCGCAAAG-TCTCCATTCCTTTTAA
* * *
3519740 GATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATG---TTTTTTTGGATG
1 GATTAGGCACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAAG
* * * * * * *
3519802 GAAATCTTTTCTTTGCTTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAATAAGTCAAGCATCG
66 AAAATCTTTTCTTTGCCTCATTTTATTGAAAATCAAAGTT--TCCCTTAAATAAGACAAACATTG
* * *
3519867 ATTCCCGCAACAGTCTCCGTTCCTTTCAA
129 ATTCTCGCAA-AGTCTCCATTCCTTTTAA
* * * ** * * * *
3519896 GA-TGGGAAGCCA-AAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCT-CC
1 GATTAGGCA-CCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTT-TTTTTTGCA
* * * *
3519958 AGAAAAGCTTTTCTTTTCAC-CA-TTT-TTGATAGAATCAAAGTTTGCTTCTTATATAAGACAAA
64 AGAAAATCTTTTCTTTGC-CTCATTTTATTGA-A-AATCAAAGTTT-C-CCTTAAATAAGACAAA
* * ** *
3520020 CATT-ACTACTCATGCAAA-TCCCCATTTTTTTTAG
124 CATTGA-TTCTC--GCAAAGTCTCCATTCCTTTTAA
* * * * ** * *
3520054 GA-TAGGCACCATAGACATAAT-CTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAA
1 GATTAGGCACCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAA
** * * * * ** * * *
3520117 GAAAGGC-TTT-TTTCCCAACA-ATTATTGTAAAGTCTTAGTTTGTGCCTCAAATGAGACAAACA
65 GAAAATCTTTTCTTTGCC-TCATTTTATTG-AAAATCAAAG-TT-TCCCTTAAATAAGACAAACA
* ** * * * **
3520179 TTGATTCTGGTGATGATCTTCATTCATTTTGT
126 TTGATTCTCGCAAAG-TCTCCATTCCTTTTAA
* *
3520211 GATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTTTGCA
1 GATTAGGCACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATG--CTTTTTTTTTGCA
* * * * *
3520276 TGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGCAT
64 AGAAAATCTTTTCTTTGCCTCATTTTATTGAAAATCAAAGTT--TCCCTTAAATAAGACAAACAT
* * *
3520341 CGATTCTCACAACAGTCTCCATTCCTTTCAA
127 TGATTCTCGCAA-AGTCTCCATTCCTTTTAA
* * * * ** ** * *
3520372 GATTAAGAAGCCA-AAACACATTCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAA
1 GATTAGGCA-CCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAA
* * * ** * *
3520436 AAAAAGCTTTTCTTT-TCTCCGTTT-TTGATAGAATCAAAGTTTATCTCTTATATAAGACAAACA
65 GAAAATCTTTTCTTTGCCTCATTTTATTGA-A-AATCAAAG-TT-TCCCTTAAATAAGACAAACA
* * * * **
3520499 -TGAAT-ACGCATACAAATCCCCATT-CTTTTCTT
126 TTGATTCTCGC--A-AAGTCTCCATTCCTTTT-AA
* * * * * ***
3520531 GATTAGGCACCATAAACATAGT-CTTCTCATTAGGATACATTATATTGATGCTTTGGATTTGCAA
1 GATTAGGCACCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAA
** * *** * * * * *
3520595 GAAAGGC-TTT-TTT-CCTGCCAATTT-TTGTAGGGTCTAAGTTCGTGCCTCAAATGAGGCAAAC
65 GAAAATCTTTTCTTTGCCT--CATTTTATTG-AAAATCAAAGTT--TCCCTTAAATAAGACAAAC
* * * ** * **
3520656 ATGGATTCTAGTGATAA--CTTGATTCATTTTGT
125 ATTGATTCTCG-CA-AAGTCTCCATTCCTTTTAA
* * * * ** **
3520688 GATTAAGCACTAGAAAGACATTCTCC-TCATTAGGATAAATGATATTGATAATTTGCTTTTGCCA
1 GATTAGGCACCATAAACACATTC-CCTTCATTAGGATAAATGATATTGATGCTTTTTTTTTG-CA
* * * * * * *
3520752 AG-AAATCTTATCTTTGCCTTATTTTCCTT-AAAATCAAAATTCGTTCCTTAAATAAGATAAGCA
64 AGAAAATCTTTTCTTTGCCTCATTTT-ATTGAAAATCAAAGTT--TCCCTTAAATAAGACAAACA
* ** * * *
3520815 TCGATTCTCATAATAGTATCCTTTCCTTTCAA
126 TTGATTCTCGCAA-AGTCTCCATTCCTTTTAA
* * * *
3520847 GATTGGGAAACCA-AAACACATTCCCTTCATTAGGATACATGACATTGATGCTTT
1 GATTAGG-CACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTT
3520901 GGTGTCGCAA
Statistics
Matches: 1729, Mismatches: 531, Indels: 316
0.67 0.21 0.12
Matches are distributed among these distances:
152 50 0.03
153 27 0.02
154 15 0.01
155 129 0.07
156 153 0.09
157 178 0.10
158 684 0.40
159 337 0.19
160 56 0.03
161 87 0.05
162 13 0.01
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (156 bp):
GATTAGGCACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAAG
AAAATCTTTTCTTTGCCTCATTTTATTGAAAATCAAAGTTTCCCTTAAATAAGACAAACATTGAT
TCTCGCAAAGTCTCCATTCCTTTTAA
Found at i:3519404 original size:475 final size:475
Alignment explanation
Indices: 3518311--3521117 Score: 4050
Period size: 475 Copynumber: 5.9 Consensus size: 475
3518301 AGTTTGTGCC
* *
3518311 TCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC-TCCTTAGGATAAATGGTATTGATGA
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCTTCATTAGGATAAATGATATTGATGA
* * * * *
3518375 TTTTCTTTTACATAGAAATCTTTTCTTTGCCCTATTTTCCTT-AAAATCAAAGTTCTTCCCTTAA
65 TTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTT-CTTGAAAATCAAAGTTCATCCCTTAA
* * * *
3518439 ATAAGACACGCATCGATTCTCATAATAGTCTCCACTCCTTTCAAGATGGGAAGCCAAAACACATT
129 ATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATT
* *
3518504 CCCTTCATTAGAATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATT
194 CCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATT
3518569 TTTGATAGAATCAAAGTTTGCCTCTTATATAAG--AAACATTACTACTCATGCAAATCCCCA-TT
259 TTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTT
*
3518631 TTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTCTTGTT
324 TTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTT
* *
3518696 TCGCAAGAAAAGCTTTTTT-CCA-AAATTATTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAA
389 TCGCAAGAAATGCTTTTTTCCCACAAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAA
* *
3518759 ACATTAATTCTAGTGATGATAT
454 ACATTGATTCTAGTGATGATCT
*
3518781 TCATTCA-TTT-TGA--AAGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
* * *
3518842 TTTTTTTTGGATGAAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCGAAGTTCATCCCTTAAAT
66 TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
* *
3518907 AAGACAAGCATTGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
131 AAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
** * * *
3518972 CTTCATTAGGGCACATGGCATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTTTCAACATTTT
196 CTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
*
3519037 TGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
261 TGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
* *
3519102 TTTAGGATTAGGCACCATAGACATAATCTTATCATTAGGATAAACCATATTGATGCTTTTGTTCC
326 TTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTC
* *
3519167 GCAAGACATGCTTTTTTCCCACAAATTATTGTAATGTCTAAGTTTGCGCCTCAAATGAGACAAAC
391 GCAAGAAATGCTTTTTTCCCACAAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAAC
3519232 ATTGATTCTAGTGATGATCT
456 ATTGATTCTAGTGATGATCT
* *
3519252 TCATTCATTTTGTGATTAGGCACCACAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
* *
3519317 TTTTTTTTGGATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTAATCCCTTAAAT
66 TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
* * *
3519382 AAAACAAGCACCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
131 AAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
* * * *
3519447 CTTCATTAGGATACATGGCATTGATACTTTGGTGTCACAAGAAAAGCTTTTCTTTCCATCATTAT
196 CTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
3519512 TGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
261 TGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
*
3519577 TTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATTTTGATGCTTTTGTTTC
326 TTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTC
*
3519642 GCAAGAAATGCTTTTTTCCCACAAATTATTGTAATGTCTAAGTTTGCGCCTCAAATGAGACAAAC
391 GCAAGAAATGCTTTTTTCCCACAAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAAC
3519707 ATTGATTCTAGTGATGATCT
456 ATTGATTCTAGTGATGATCT
3519727 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATG--
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
* *
3519790 -TTTTTTTGGATGGAAATCTTTTCTTTGCTTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
66 TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
* * * *
3519854 AAGTCAAGCATCGATTCCCGCAACAGTCTCCGTTCCTTTCAAGATGGGAAGCCAAAACACATTCC
131 AAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
* * *
3519919 CTTCATTAGGATACATGGCATTGATGCTTTGGTGTCTCCAGAAAAGCTTTTCTTTTCACCATTTT
196 CTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
*
3519984 TGATAGAATCAAAGTTTGCTTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
261 TGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
3520049 TTTAGGA-TAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTC
326 TTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTC
* * *
3520113 GCAAGAAAGGCTTTTTTCCCA-ACAATTATTGTAAAGTCTTAGTTTGTGCCTCAAATGAGACAAA
391 GCAAGAAATGCTTTTTTCCCACA-AATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAA
*
3520177 CATTGATTCTGGTGATGATCT
455 CATTGATTCTAGTGATGATCT
3520198 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGA-
3520263 TTTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAA
65 -TTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAA
**
3520328 ATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATTAAGAAGCCAAAACACAT
129 ATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACACAT
* * * * *
3520393 TCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAAAAAAGCTTTTCTTTTCTCCGT
193 TCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCAT
** * * * *
3520458 TTTTGATAGAATCAAAGTTTATCTCTTATATAAGACAAACATGAATACGCATACAAATCCCCATT
258 TTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATT
* * * ** *
3520523 CTTTTCTT--GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATTATATTGATGCTTTG
323 -TTTT-TTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTT
* ** * * ** * *
3520586 GATTT-GCAAGAAAGGCTTTTTTCCTGCCAATTTTTGTAGGGTCTAAGTTCGTGCCTCAAATGAG
386 G-TTTCGCAAGAAATGCTTTTTTCCCACAAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAG
* * *
3520650 GCAAACATGGATTCTAGTGAT-AACT
450 ACAAACATTGATTCTAGTGATGATCT
* * * * *
3520675 TGATTCATTTTGTGATTAAGCACTAGAAAGACATTCTCC-TCATTAGGATAAATGATATTGATAA
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCTTCATTAGGATAAATGATATTGATGA
** * * * * *
3520739 TTTGCTTTTGCCA-AGAAATCTTATCTTTGCCTTATTTTCCTT-AAAATCAAAATTCGTTCCTTA
65 TTTTTTTTTG-CATGGAAATCTTTTCTTTGCCTTATTTT-CTTGAAAATCAAAGTTCATCCCTTA
* * * * * *
3520802 AATAAGATAAGCATCGATTCTCATAATAGTATCCTTTCCTTTCAAGATTGGGAAACCAAAACACA
128 AATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACACA
* * * *
3520867 TTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTCCTTTCCATCG
192 TTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCA
* * * * ***
3520932 TTTTTGATAGAATCAAGGTTTGCCTCTCATATAAGACAAACATGAATACTCAAATAAATCCCCAT
257 TTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCAT
* * ** * * * *
3520997 TCTTTTCTT--GATTAGGCATCATAAACATAGCCTTCTGATTAGGATAGACGATATTGACG-TTT
322 T-TTTT-TTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTT
*** * * *
3521059 TAGTTAT-GCAAG-AATGGGATTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCA
385 T-GTT-TCGCAAGAAATGCTTTTTTCCCACAAATTATTGTAAAGTCTAAGTTTGCGCCTCA
3521118 TTCATTTTGT
Statistics
Matches: 2142, Mismatches: 167, Indels: 52
0.91 0.07 0.02
Matches are distributed among these distances:
465 5 0.00
466 242 0.11
468 30 0.01
469 84 0.04
470 11 0.01
471 263 0.12
472 255 0.12
473 3 0.00
474 43 0.02
475 779 0.36
476 107 0.05
477 194 0.09
478 121 0.06
479 5 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (475 bp):
TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
AAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
CTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
TGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
TTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTC
GCAAGAAATGCTTTTTTCCCACAAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAAC
ATTGATTCTAGTGATGATCT
Found at i:3521785 original size:158 final size:156
Alignment explanation
Indices: 3521128--3523229 Score: 809
Period size: 158 Copynumber: 13.3 Consensus size: 156
3521118 TTCATTTTGT
* * * * * *
3521128 GATTAGGCACTATAAACACATTCTCC-TCCTTAGGATAAATGGTATTGATGATTTTCTTTTACAT
1 GATTAGGCACCATAAACACATTC-CCTTCATTAGGATAAATGATATTGATGCTTTTTTTTTGCA-
* **
3521192 AG-AAATCTTTTCTTTGCC-CTATTTTCCTT-AAAATCAAAGTTCTTCCCTTAAATAAGACACGC
64 AGAAAATCTTTTCTTTGCCTC-ATTTT-ATTGAAAATCAAAG-T-TTCCCTTAAATAAGACAAAC
* ** * *
3521254 ATCGATTCTCATAATAGTCTCCACTCCTTTCAA
125 ATTGATTCTCGCAA-AGTCTCCATTCCTTTTAA
* * * * ** * ** * *
3521287 GA-TGGGAAGCCA-AAACACATTCCCTTCATTAGAATACATGGCATTGATACTTTGGTGTCGCAA
1 GATTAGGCA-CCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAA
* * *
3521350 GAAAAGCTTTTCTTT-CCACCA-TTT-TTGATAGAATCAAAGTTTGCCTCTTATATAAG--AAAC
65 GAAAATCTTTTCTTTGCC-TCATTTTATTGA-A-AATCAAAGTTT-CC-CTTAAATAAGACAAAC
* * * *
3521410 ATT-ACTACTCATGCAAA-TCCCCATT-TTTTTAG
125 ATTGA-TTCTC--GCAAAGTCTCCATTCCTTTTAA
* * * * ** * * *
3521442 GATTAGGCACCATAGACATAAT-CTTCTCATTAGGATAAACCATATTGATGCTCTTGTTTCGCAA
1 GATTAGGCACCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAA
* * ** * * * *
3521506 GAAAAGC-TTT-TTT-CC-AAAATTATTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAAACAT
65 GAAAATCTTTTCTTTGCCTCATTTTATTG-AAAATCAAAGTTT-C-CCTTAAATAAGACAAACAT
* * ** * * * *
3521567 TAATTCTAGTGATGATATTCATTCATTTT--
127 TGATTCTCGCAAAG-TCTCCATTCCTTTTAA
* * * * *
3521596 GA--AAGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGGATG
1 GATTAGGCACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAAG
* * * *
3521659 AAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCGAAGTTCATCCCTTAAATAAGACAAGCATTG
66 AAAATCTTTTCTTTGCCTCATTTTATTGAAAATCAAAGTT--TCCCTTAAATAAGACAAACATTG
*
3521724 ATTCTCGCAACAGTCTCCATTCCTTTCAA
129 ATTCTCGCAA-AGTCTCCATTCCTTTTAA
* * ** * ** * * *
3521753 GA-TGGGAAGCCA-AAACACATTCCCTTCATTAGGGCACATGGCATTGATGCTTTGGTGTCT-CA
1 GATTAGGCA-CCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTT-TTTTTTGCA
* * ** * *
3521815 AGAAAAGCTTTTCTTTTCAACA-TTT-TTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAAC
64 AGAAAATCTTTTCTTTGCCTCATTTTATTGA-A-AATCAAAG-TT-TCCCTTAAATAAGACAAAC
* * ** *
3521878 ATT-ACTACTCATGCAAA-TCCCCATTTTTTTTAG
125 ATTGA-TTCTC--GCAAAGTCTCCATTCCTTTTAA
* * * * ** * **
3521911 GATTAGGCACCATAGACATAAT-CTTATCATTAGGATAAACCATATTGATGCTTTTGTTCCGCAA
1 GATTAGGCACCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAA
* * * ** ** * * *
3521975 G-ACATGC-TTT-TTTCCCACAAATTATTGTAATGTCTAAGTTTGCGCCTCAAATGAGACAAACA
65 GAAAAT-CTTTTCTTTGCCTCATTTTATTG-AAAATCAAAGTTT-C-CCTTAAATAAGACAAACA
* ** * * * **
3522037 TTGATTCTAGTGATGATCTTCATTCATTTTGT
126 TTGATTCTCGCAAAG-TCTCCATTCCTTTTAA
* * * *
3522069 GATTAGGCACCACAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGGATG
1 GATTAGGCACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAAG
* * * * * **
3522134 GAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTAATCCCTTAAATAAAACAAGCACCG
66 AAAATCTTTTCTTTGCCTCATTTTATTGAAAATCAAAGTT--TCCCTTAAATAAGACAAACATTG
*
3522199 ATTCTCGCAACAGTCTCCATTCCTTTCAA
129 ATTCTCGCAA-AGTCTCCATTCCTTTTAA
* * * ** * ** * **
3522228 GA-TGGGAAGCCA-AAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCACAA
1 GATTAGGCA-CCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAA
* *
3522291 GAAAAGCTTTTCTTT-CCATCA--TTATTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAAC
65 GAAAATCTTTTCTTTGCC-TCATTTTATTGA-A-AATCAAAGTTT-CC-CTTAAATAAGACAAAC
* * ** *
3522353 ATT-ACTACTCATGCAAA-TCCCCATTTTTTTTAG
125 ATTGA-TTCTC--GCAAAGTCTCCATTCCTTTTAA
* * * * ** * * *
3522386 GATTAGGCACCATAGACATAAT-CTTCTCATTAGGATAAACCATTTTGATGCTTTTGTTTCGCAA
1 GATTAGGCACCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAA
* * ** ** * * *
3522450 G-AAATGC-TTT-TTTCCCACAAATTATTGTAATGTCTAAGTTTGCGCCTCAAATGAGACAAACA
65 GAAAAT-CTTTTCTTTGCCTCATTTTATTG-AAAATCAAAGTTT-C-CCTTAAATAAGACAAACA
* ** * * * **
3522512 TTGATTCTAGTGATGATCTTCATTCATTTTGT
126 TTGATTCTCGCAAAG-TCTCCATTCCTTTTAA
* * *
3522544 GATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATG---TTTTTTTGGATG
1 GATTAGGCACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAAG
* * * * * * *
3522606 GAAATCTTTTCTTTGCTTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAATAAGTCAAGCATCG
66 AAAATCTTTTCTTTGCCTCATTTTATTGAAAATCAAAGTT--TCCCTTAAATAAGACAAACATTG
* * *
3522671 ATTCCCGCAACAGTCTCCGTTCCTTTCAA
129 ATTCTCGCAA-AGTCTCCATTCCTTTTAA
* * * ** * * * *
3522700 GA-TGGGAAGCCA-AAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCT-CC
1 GATTAGGCA-CCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTT-TTTTTTGCA
* * * *
3522762 AGAAAAGCTTTTCTTTTCAC-CA-TTT-TTGATAGAATCAAAGTTTGCTTCTTATATAAGACAAA
64 AGAAAATCTTTTCTTTGC-CTCATTTTATTGA-A-AATCAAAGTTT-C-CCTTAAATAAGACAAA
* * ** *
3522824 CATT-ACTACTCATGCAAA-TCCCCATTTTTTTTAG
124 CATTGA-TTCTC--GCAAAGTCTCCATTCCTTTTAA
* * * * ** * *
3522858 GA-TAGGCACCATAGACATAAT-CTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAA
1 GATTAGGCACCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAA
** * * * * ** * * *
3522921 GAAAGGC-TTT-TTTCCCAACA-ATTATTGTAAAGTCTTAGTTTGTGCCTCAAATGAGACAAACA
65 GAAAATCTTTTCTTTGCC-TCATTTTATTG-AAAATCAAAG-TT-TCCCTTAAATAAGACAAACA
* ** * * * **
3522983 TTGATTCTGGTGATGATCTTCATTCATTTTGT
126 TTGATTCTCGCAAAG-TCTCCATTCCTTTTAA
* *
3523015 GATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTTTGCA
1 GATTAGGCACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATG--CTTTTTTTTTGCA
* * * * * * *
3523080 TGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAATTCGTTCCTTAAATAAGACAAGCAT
64 AGAAAATCTTTTCTTTGCCTCATTTTATTGAAAATCAAAGTT--TCCCTTAAATAAGACAAACAT
* ** * *
3523145 CGATTCTCATAATAGTCTCCTTTCCTTTCAA
127 TGATTCTCGCAA-AGTCTCCATTCCTTTTAA
* * * *
3523176 GATTGGGAAACCA-AAACACATTCCCTTCATTAGGATACATGACATTGATGCTTT
1 GATTAGG-CACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTT
3523230 GGTGTCGCAA
Statistics
Matches: 1399, Mismatches: 416, Indels: 256
0.68 0.20 0.12
Matches are distributed among these distances:
152 50 0.04
153 27 0.02
154 15 0.01
155 129 0.09
156 152 0.11
157 110 0.08
158 599 0.43
159 172 0.12
160 43 0.03
161 88 0.06
162 14 0.01
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (156 bp):
GATTAGGCACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTTTTTTTTGCAAG
AAAATCTTTTCTTTGCCTCATTTTATTGAAAATCAAAGTTTCCCTTAAATAAGACAAACATTGAT
TCTCGCAAAGTCTCCATTCCTTTTAA
Found at i:3522208 original size:475 final size:475
Alignment explanation
Indices: 3521115--3523446 Score: 3608
Period size: 475 Copynumber: 4.9 Consensus size: 475
3521105 AGTTTGTGCC
* *
3521115 TCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC-TCCTTAGGATAAATGGTATTGATGA
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCTTCATTAGGATAAATGATATTGATGA
* ** * * *
3521179 TTTTCTTTTACATAGAAATCTTTTCTTTGCCCTATTTTCCTT-AAAATCAAAGTTCTTCCCTTAA
65 TTTTTTTTTGGATGGAAATCTTTTCTTTGCCTTATTTT-CTTGAAAATCAAAGTTCATCCCTTAA
* ** * *
3521243 ATAAGACACGCATCGATTCTCATAATAGTCTCCACTCCTTTCAAGATGGGAAGCCAAAACACATT
129 ATAAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATT
* *
3521308 CCCTTCATTAGAATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATT
194 CCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATT
3521373 TTTGATAGAATCAAAGTTTGCCTCTTATATAAG--AAACATTACTACTCATGCAAATCCCCA-TT
259 TTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTT
*
3521435 TTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTCTTGTT
324 TTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTT
* *
3521500 TCGCAAGAAAAGCTTTTTT-CCA-AAATTATTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAA
389 TCGCAAGAAATGCTTTTTTCCCACAAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAA
* *
3521563 ACATTAATTCTAGTGATGATAT
454 ACATTGATTCTAGTGATGATCT
*
3521585 TCATTCA-TTT-TGA--AAGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
* *
3521646 TTTTTTTTGGATGAAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCGAAGTTCATCCCTTAAAT
66 TTTTTTTTGGATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
*
3521711 AAGACAAGCATTGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
131 AAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
** * * *
3521776 CTTCATTAGGGCACATGGCATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTTTCAACATTTT
196 CTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
*
3521841 TGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
261 TGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
* *
3521906 TTTAGGATTAGGCACCATAGACATAATCTTATCATTAGGATAAACCATATTGATGCTTTTGTTCC
326 TTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTC
* *
3521971 GCAAGACATGCTTTTTTCCCACAAATTATTGTAATGTCTAAGTTTGCGCCTCAAATGAGACAAAC
391 GCAAGAAATGCTTTTTTCCCACAAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAAC
3522036 ATTGATTCTAGTGATGATCT
456 ATTGATTCTAGTGATGATCT
* *
3522056 TCATTCATTTTGTGATTAGGCACCACAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
*
3522121 TTTTTTTTGGATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTAATCCCTTAAAT
66 TTTTTTTTGGATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
* *
3522186 AAAACAAGCACCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
131 AAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
* * * *
3522251 CTTCATTAGGATACATGGCATTGATACTTTGGTGTCACAAGAAAAGCTTTTCTTTCCATCATTAT
196 CTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
3522316 TGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
261 TGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
*
3522381 TTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATTTTGATGCTTTTGTTTC
326 TTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTC
*
3522446 GCAAGAAATGCTTTTTTCCCACAAATTATTGTAATGTCTAAGTTTGCGCCTCAAATGAGACAAAC
391 GCAAGAAATGCTTTTTTCCCACAAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAAC
3522511 ATTGATTCTAGTGATGATCT
456 ATTGATTCTAGTGATGATCT
3522531 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATG--
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
*
3522594 -TTTTTTTGGATGGAAATCTTTTCTTTGCTTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
66 TTTTTTTTGGATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
* * *
3522658 AAGTCAAGCATCGATTCCCGCAACAGTCTCCGTTCCTTTCAAGATGGGAAGCCAAAACACATTCC
131 AAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
* * *
3522723 CTTCATTAGGATACATGGCATTGATGCTTTGGTGTCTCCAGAAAAGCTTTTCTTTTCACCATTTT
196 CTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
*
3522788 TGATAGAATCAAAGTTTGCTTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
261 TGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
3522853 TTTAGGA-TAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTC
326 TTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTC
* * *
3522917 GCAAGAAAGGCTTTTTTCCCA-ACAATTATTGTAAAGTCTTAGTTTGTGCCTCAAATGAGACAAA
391 GCAAGAAATGCTTTTTTCCCACA-AATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAA
*
3522981 CATTGATTCTGGTGATGATCT
455 CATTGATTCTAGTGATGATCT
3523002 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGA-
* * * *
3523067 TTTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAATTCGTTCCTTAA
65 -TTTTTTTTTGGATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAA
** * * *
3523132 ATAAGACAAGCATCGATTCTCATAATAGTCTCCTTTCCTTTCAAGATTGGGAAACCAAAACACAT
129 ATAAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACACAT
* * * *
3523197 TCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTCCTTTCCATCGT
193 TCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCAT
* * * * ***
3523262 TTTTGATAGAATCAAGGTTTGCCTCTCATATAAGACAAACATGAATACTCAAATAAATCCCCATT
258 TTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATT
* * ** * * * *
3523327 CTTTTCTT--GATTAGGCATCATAAACATAGCCTTCTGATTAGGATAGACGATATTGACG-TTTT
323 -TTTT-TTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTT
*** * * *
3523389 AGTTAT-GCAAG-AATGGGATTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCA
386 -GTT-TCGCAAGAAATGCTTTTTTCCCACAAATTATTGTAAAGTCTAAGTTTGCGCCTCA
3523447 TTCATTTTGT
Statistics
Matches: 1719, Mismatches: 119, Indels: 41
0.91 0.06 0.02
Matches are distributed among these distances:
465 5 0.00
466 242 0.14
468 30 0.02
469 84 0.05
470 11 0.01
471 263 0.15
472 255 0.15
473 3 0.00
475 498 0.29
476 97 0.06
477 177 0.10
478 51 0.03
479 3 0.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.36
Consensus pattern (475 bp):
TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
TTTTTTTTGGATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
AAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
CTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
TGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
TTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTC
GCAAGAAATGCTTTTTTCCCACAAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAAC
ATTGATTCTAGTGATGATCT
Found at i:3524114 original size:158 final size:157
Alignment explanation
Indices: 3523457--3525558 Score: 652
Period size: 158 Copynumber: 13.3 Consensus size: 157
3523447 TTCATTTTGT
* * * * *
3523457 GATTAGGCACTATAAACACATTCTCC-TCCTTAGGATAAATGGTATTGATGATTTTCTTTTACAT
1 GATTAGGCACCATAAACACATTC-CCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGCA-
* * * **
3523521 AG-AAATCTTTTCTTTGCCCTATTTTCCTT-AAAATCAAAGTTCTTCCCTTAAATAAGACACGCA
64 AGAAAATCTTTTCTTTGCCTTATTTT-ATTGAAAATCAAAGTT-ATCCCTTAAATAAGACAAACA
* ** * *
3523584 TCGATTCTCATAATAGTCTCCACTCCTTTCAA
127 TTGATTCTCGCAA-AGTCTCCATTCCTTTTAA
* * * * ** ** * *
3523616 GA-TGGGAAGCCA-AAACACATTCCCTTCATTAGAATACATGGCATTGAT-ACTTTGGTGTCGCA
1 GATTAGGCA-CCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGA-TTTTTTTTTGCA
* ** *
3523678 AGAAAAGCTTTTCTTT-CCACCA-TTT-TTGATAGAATCAAAGTT-TGCCTCTTATATAAG--AA
64 AGAAAATCTTTTCTTTGCC-TTATTTTATTGA-A-AATCAAAGTTAT-CC-CTTAAATAAGACAA
* * * *
3523737 ACATT-ACTACTCATGCAAA-TCCCCATT-TTTTTAG
124 ACATTGA-TTCTC--GCAAAGTCTCCATTCCTTTTAA
* * * * ** * * * *
3523771 GATTAGGCACCATAGACATAAT-CTTCTCATTAGGATAAACCATATTGATGCTCTTGTTTCGCAA
1 GATTAGGCACCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATGATTTTTTTTTGCAA
* * ** * * * *
3523835 GAAAAGC-TTT-TTT-CC-AAAATTATTGTAAAGTCTAAGTT-TGCACCTCAAATGAGACAAACA
65 GAAAATCTTTTCTTTGCCTTATTTTATTG-AAAATCAAAGTTAT-C-CCTTAAATAAGACAAACA
* * ** * * * *
3523895 TTAATTCTAGTGATGATATTCATTCATTTT--
127 TTGATTCTCGCAAAG-TCTCCATTCCTTTTAA
* * * *
3523925 GA--AAGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGGATG
1 GATTAGGCACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGCAAG
* * *
3523988 AAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCGAAGTTCATCCCTTAAATAAGACAAGCATTG
66 AAAATCTTTTCTTTGCCTTATTTTATTGAAAATCAAAGTT-ATCCCTTAAATAAGACAAACATTG
*
3524053 ATTCTCGCAACAGTCTCCATTCCTTTCAA
130 ATTCTCGCAA-AGTCTCCATTCCTTTTAA
* * ** * ** * * * *
3524082 GA-TGGGAAGCCA-AAACACATTCCCTTCATTAGGGCACATGGCATTGATGCTTTGGTGTCT-CA
1 GATTAGGCA-CCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTT-TTTTTTGCA
* * *** * * *
3524144 AGAAAAGCTTTTCTTTTCAACA-TTT-TTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAAC
64 AGAAAATCTTTTCTTTGCCTTATTTTATTGA-A-AATCAAAG-TTATCCCTTAAATAAGACAAAC
* * ** *
3524207 ATT-ACTACTCATGCAAA-TCCCCATTTTTTTTAG
126 ATTGA-TTCTC--GCAAAGTCTCCATTCCTTTTAA
* * * * ** * * **
3524240 GATTAGGCACCATAGACATAAT-CTTATCATTAGGATAAACCATATTGATGCTTTTGTTCCGCAA
1 GATTAGGCACCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATGATTTTTTTTTGCAA
* * ** ** ** * * *
3524304 G-ACATGC-TTT-TTTCCCACAAATTATTGTAATGTCTAAGTT-TGCGCCTCAAATGAGACAAAC
65 GAAAAT-CTTTTCTTTGCCTTATTTTATTG-AAAATCAAAGTTAT-C-CCTTAAATAAGACAAAC
* ** * * * **
3524365 ATTGATTCTAGTGATGATCTTCATTCATTTTGT
126 ATTGATTCTCGCAAAG-TCTCCATTCCTTTTAA
* * *
3524398 GATTAGGCACCACAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGGATG
1 GATTAGGCACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGCAAG
* * * * **
3524463 GAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTAATCCCTTAAATAAAACAAGCACCG
66 AAAATCTTTTCTTTGCCTTATTTTATTGAAAATCAAAGTT-ATCCCTTAAATAAGACAAACATTG
*
3524528 ATTCTCGCAACAGTCTCCATTCCTTTCAA
130 ATTCTCGCAA-AGTCTCCATTCCTTTTAA
* * * ** ** * **
3524557 GA-TGGGAAGCCA-AAACACATTCCCTTCATTAGGATACATGGCATTGAT-ACTTTGGTGTCACA
1 GATTAGGCA-CCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGA-TTTTTTTTTGCA
* * *
3524619 AGAAAAGCTTTTCTTT-CC--ATCATTATTGATAGAATCAAAGTT-TGCCTCTTATATAAGACAA
64 AGAAAATCTTTTCTTTGCCTTAT-TTTATTGA-A-AATCAAAGTTAT-CC-CTTAAATAAGACAA
* * ** *
3524680 ACATT-ACTACTCATGCAAA-TCCCCATTTTTTTTAG
124 ACATTGA-TTCTC--GCAAAGTCTCCATTCCTTTTAA
* * * * ** * * * *
3524715 GATTAGGCACCATAGACATAAT-CTTCTCATTAGGATAAACCATTTTGATGCTTTTGTTTCGCAA
1 GATTAGGCACCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATGATTTTTTTTTGCAA
** ** * ** * * * *
3524779 G-AAATGC-TTT-TTT-CCCAACAATTATTGTAAAGTCTTAGTTTGTGCCTCAAATGAGACAAAC
65 GAAAAT-CTTTTCTTTGCCTTA-TTTTATTG-AAAATCAAAG-TTATCCCTTAAATAAGACAAAC
* ** * * * **
3524840 ATTGATTCTGGTGATGATCTTCATTCATTTTGT
126 ATTGATTCTCGCAAAG-TCTCCATTCCTTTTAA
*
3524873 GATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTTTGCA
1 GATTAGGCACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGA--TTTTTTTTTGCA
* * * *
3524938 TGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGCAT
64 AGAAAATCTTTTCTTTGCCTTATTTTATTGAAAATCAAAGTT-ATCCCTTAAATAAGACAAACAT
* * *
3525003 CGATTCTCACAACAGTCTCCATTCCTTTCAA
128 TGATTCTCGCAA-AGTCTCCATTCCTTTTAA
* * * * ** * ** * *
3525034 GATTAAGAAGCCA-AAACACATTCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAA
1 GATTAGGCA-CCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGCAA
* * * *** * *
3525098 AAAAAGCTTTTCTTT-TCTCCGTTT-TTGATAGAATCAAAGTTTATCTCTTATATAAGACAAACA
65 GAAAATCTTTTCTTTGCCTTATTTTATTGA-A-AATCAAAG-TTATCCCTTAAATAAGACAAACA
* * * * **
3525161 -TGAAT-ACGCATACAAATCCCCATT-CTTTTCTT
127 TTGATTCTCGC--A-AAGTCTCCATTCCTTTT-AA
* * * * * * ***
3525193 GATTAGGCACCATAAACATAGT-CTTCTCATTAGGATACATTATATTGATGCTTTGGATTTGCAA
1 GATTAGGCACCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATGATTTTTTTTTGCAA
* *** * * * * * *
3525257 G-AAATGCTTTT-TTCCTGCC--AATTT-TTGTAGGGTCTAAGTTCGTGCCTCAAATGAGGCAAA
65 GAAAAT-CTTTTCTT--TGCCTTATTTTATTG-AAAATCAAAGTT-ATCCCTTAAATAAGACAAA
* * * ** * **
3525317 CATGGATTCTAGTGATAA--CTTGATTCATTTTGT
125 CATTGATTCTCG-CA-AAGTCTCCATTCCTTTTAA
* * * * * **
3525350 GATTAAGCACTAGAAAGACATTCTCC-TCATTAGGATAAATGATATTGATAATTTGCTTTTGCCA
1 GATTAGGCACCATAAACACATTC-CCTTCATTAGGATAAATGATATTGATGATTTTTTTTTG-CA
** * * * * * *
3525414 AG-AAATCTAATCTTTGCCTTATTTTCCTT-AAAATCAAAATTCGTTCCTTAAATAAGATAAGCA
64 AGAAAATCTTTTCTTTGCCTTATTTT-ATTGAAAATCAAAGTT-ATCCCTTAAATAAGACAAACA
* ** * *
3525477 TCGATTCTCATAATAGTCTCCTTTCCTTTCAA
127 TTGATTCTCGCAA-AGTCTCCATTCCTTTTAA
* * * *
3525509 GATTGGGAAACCA-AAACACATTCCCTTCATTAGGATACATGACATTGATG
1 GATTAGG-CACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATG
3525559 CTTTGGTGTC
Statistics
Matches: 1395, Mismatches: 416, Indels: 264
0.67 0.20 0.13
Matches are distributed among these distances:
152 50 0.04
153 27 0.02
154 15 0.01
155 81 0.06
156 94 0.07
157 107 0.08
158 542 0.39
159 325 0.23
160 49 0.04
161 91 0.07
162 11 0.01
163 3 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (157 bp):
GATTAGGCACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGCAAG
AAAATCTTTTCTTTGCCTTATTTTATTGAAAATCAAAGTTATCCCTTAAATAAGACAAACATTGA
TTCTCGCAAAGTCTCCATTCCTTTTAA
Found at i:3524537 original size:475 final size:475
Alignment explanation
Indices: 3523444--3525779 Score: 3262
Period size: 475 Copynumber: 4.9 Consensus size: 475
3523434 AGTTTGTGCC
* *
3523444 TCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC-TCCTTAGGATAAATGGTATTGATGA
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCTTCATTAGGATAAATGATATTGATGA
* * * * *
3523508 TTTTCTTTTACATAGAAATCTTTTCTTTGCCCTATTTTCCTT-AAAATCAAAGTTCTTCCCTTAA
65 TTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTT-CTTGAAAATCAAAGTTCATCCCTTAA
* * * *
3523572 ATAAGACACGCATCGATTCTCATAATAGTCTCCACTCCTTTCAAGATGGGAAGCCAAAACACATT
129 ATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATT
* *
3523637 CCCTTCATTAGAATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATT
194 CCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATT
3523702 TTTGATAGAATCAAAGTTTGCCTCTTATATAAG--AAACATTACTACTCATGCAAATCCCCA-TT
259 TTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTT
*
3523764 TTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTCTTGTT
324 TTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTT
* **
3523829 TCGCAAGAAAAGCTTTTTT-CCA-AAATTATTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAA
389 TCGCAAGAAATGCTTTTTTCCCACAAATTATTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAA
* *
3523892 ACATTAATTCTAGTGATGATAT
454 ACATTGATTCTAGTGATGATCT
*
3523914 TCATTCA-TTT-TGA--AAGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
* * *
3523975 TTTTTTTTGGATGAAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCGAAGTTCATCCCTTAAAT
66 TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
* *
3524040 AAGACAAGCATTGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
131 AAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
** * * *
3524105 CTTCATTAGGGCACATGGCATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTTTCAACATTTT
196 CTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
*
3524170 TGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
261 TGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
* *
3524235 TTTAGGATTAGGCACCATAGACATAATCTTATCATTAGGATAAACCATATTGATGCTTTTGTTCC
326 TTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTC
* * *
3524300 GCAAGACATGCTTTTTTCCCACAAATTATTGTAATGTCTAAGTTTGCGCCTCAAATGAGACAAAC
391 GCAAGAAATGCTTTTTTCCCACAAATTATTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAAC
3524365 ATTGATTCTAGTGATGATCT
456 ATTGATTCTAGTGATGATCT
* *
3524385 TCATTCATTTTGTGATTAGGCACCACAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
* *
3524450 TTTTTTTTGGATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTAATCCCTTAAAT
66 TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
* * *
3524515 AAAACAAGCACCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
131 AAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
* * * *
3524580 CTTCATTAGGATACATGGCATTGATACTTTGGTGTCACAAGAAAAGCTTTTCTTTCCATCATTAT
196 CTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
3524645 TGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
261 TGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
*
3524710 TTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATTTTGATGCTTTTGTTTC
326 TTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTC
*
3524775 GCAAGAAATGCTTTTTTCCCA-ACAATTATTGTAAAGTCTTAGTTTGTGCCTCAAATGAGACAAA
391 GCAAGAAATGCTTTTTTCCCACA-AATTATTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAA
*
3524839 CATTGATTCTGGTGATGATCT
455 CATTGATTCTAGTGATGATCT
3524860 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGA-
3524925 TTTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAA
65 -TTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAA
**
3524990 ATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATTAAGAAGCCAAAACACAT
129 ATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACACAT
* * * * *
3525055 TCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAAAAAAGCTTTTCTTTTCTCCGT
193 TCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCAT
** * * * *
3525120 TTTTGATAGAATCAAAGTTTATCTCTTATATAAGACAAACATGAATACGCATACAAATCCCCATT
258 TTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATT
* * * ** *
3525185 CTTTTCTT--GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATTATATTGATGCTTTG
323 -TTTT-TTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTT
** * * ** *
3525248 GATTT-GCAAGAAATGCTTTTTTCCTGCCAATTTTTGTAGGGTCTAAGTTCGTGCCTCAAATGAG
386 G-TTTCGCAAGAAATGCTTTTTTCCCACAAATTATTGTAAAGTCTAAGTTTGTGCCTCAAATGAG
* * *
3525312 GCAAACATGGATTCTAGTGAT-AACT
450 ACAAACATTGATTCTAGTGATGATCT
* * * * *
3525337 TGATTCATTTTGTGATTAAGCACTAGAAAGACATTCTCC-TCATTAGGATAAATGATATTGATAA
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCTTCATTAGGATAAATGATATTGATGA
** * ** * * *
3525401 TTTGCTTTTGCCA-AGAAATCTAATCTTTGCCTTATTTTCCTT-AAAATCAAAATTCGTTCCTTA
65 TTTTTTTTTG-CATGGAAATCTTTTCTTTGCCTTATTTT-CTTGAAAATCAAAGTTCATCCCTTA
* * * * *
3525464 AATAAGATAAGCATCGATTCTCATAATAGTCTCCTTTCCTTTCAAGATTGGGAAACCAAAACACA
128 AATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACACA
* * * *
3525529 TTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTCCTTTCCATCG
192 TTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCA
* * * * ***
3525594 TTTTTGATAGAATCAAGGTTTGCCTCTCATATAAGACAAACATGAATACTCAAATAAATCCCCAT
257 TTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCAT
* * ** * * * *
3525659 TCTTTTCTT--GATTAGGCATCATAAACATAGCCTTCTGATTAGGATAGACGATATTGACG-TTT
322 T-TTTT-TTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTT
*** * *
3525721 TAGTTAT-GCAAG-AATGGGATTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCA
385 T-GTT-TCGCAAGAAATGCTTTTTTCCCACAAATTATTGTAAAGTCTAAGTTTGTGCCTCA
3525780 TTCATTTTGT
Statistics
Matches: 1690, Mismatches: 152, Indels: 44
0.90 0.08 0.02
Matches are distributed among these distances:
465 5 0.00
466 242 0.14
468 30 0.02
469 84 0.05
470 10 0.01
471 66 0.04
472 3 0.00
473 3 0.00
474 45 0.03
475 774 0.46
476 5 0.00
477 164 0.10
478 250 0.15
479 7 0.00
480 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (475 bp):
TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
AAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
CTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
TGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
TTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTC
GCAAGAAATGCTTTTTTCCCACAAATTATTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAAC
ATTGATTCTAGTGATGATCT
Found at i:3526447 original size:158 final size:157
Alignment explanation
Indices: 3525790--3527891 Score: 661
Period size: 158 Copynumber: 13.3 Consensus size: 157
3525780 TTCATTTTGT
* * * * *
3525790 GATTAGGCACTATAAACACATTCTCC-TCCTTAGGATAAATGGTATTGATGATTTTCTTTTACAT
1 GATTAGGCACCATAAACACATTC-CCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGCA-
* * * **
3525854 AG-AAATCTTTTCTTTGCCCTATTTTCCTT-AAAATCAAAGTTCTTCCCTTAAATAAGACACGCA
64 AGAAAATCTTTTCTTTGCCTTATTTT-ATTGAAAATCAAAGTT-ATCCCTTAAATAAGACAAACA
* ** * *
3525917 TCGATTCTCATAATAGTCTCCACTCCTTTCAA
127 TTGATTCTCGCAA-AGTCTCCATTCCTTTTAA
* * * * ** ** * *
3525949 GA-TGGGAAGCCA-AAACACATTCCCTTCATTAGAATACATGGCATTGAT-ACTTTGGTGTCGCA
1 GATTAGGCA-CCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGA-TTTTTTTTTGCA
* ** *
3526011 AGAAAAGCTTTTCTTT-CCACCA-TTT-TTGATAGAATCAAAGTT-TGCCTCTTATATAAG--AA
64 AGAAAATCTTTTCTTTGCC-TTATTTTATTGA-A-AATCAAAGTTAT-CC-CTTAAATAAGACAA
* * * *
3526070 ACATT-ACTACTCATGCAAA-TCCCCATT-TTTTTAG
124 ACATTGA-TTCTC--GCAAAGTCTCCATTCCTTTTAA
* * * * ** * * * *
3526104 GATTAGGCACCATAGACATAAT-CTTCTCATTAGGATAAACCATATTGATGCTCTTGTTTCGCAA
1 GATTAGGCACCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATGATTTTTTTTTGCAA
* * ** * * * *
3526168 GAAAAGC-TTT-TTT-CC-AAAATTATTGTAAAGTCTAAGTT-TGCACCTCAAATGAGACAAACA
65 GAAAATCTTTTCTTTGCCTTATTTTATTG-AAAATCAAAGTTAT-C-CCTTAAATAAGACAAACA
* * ** * * * *
3526228 TTAATTCTAGTGATGATATTCATTCATTTT--
127 TTGATTCTCGCAAAG-TCTCCATTCCTTTTAA
* * * *
3526258 GA--AAGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGGATG
1 GATTAGGCACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGCAAG
* * *
3526321 AAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCGAAGTTCATCCCTTAAATAAGACAAGCATTG
66 AAAATCTTTTCTTTGCCTTATTTTATTGAAAATCAAAGTT-ATCCCTTAAATAAGACAAACATTG
*
3526386 ATTCTCGCAACAGTCTCCATTCCTTTCAA
130 ATTCTCGCAA-AGTCTCCATTCCTTTTAA
* * ** * ** * * * *
3526415 GA-TGGGAAGCCA-AAACACATTCCCTTCATTAGGGCACATGGCATTGATGCTTTGGTGTCT-CA
1 GATTAGGCA-CCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTT-TTTTTTGCA
* * *** * * *
3526477 AGAAAAGCTTTTCTTTTCAACA-TTT-TTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAAC
64 AGAAAATCTTTTCTTTGCCTTATTTTATTGA-A-AATCAAAG-TTATCCCTTAAATAAGACAAAC
* * ** *
3526540 ATT-ACTACTCATGCAAA-TCCCCATTTTTTTTAG
126 ATTGA-TTCTC--GCAAAGTCTCCATTCCTTTTAA
* * * * ** * * **
3526573 GATTAGGCACCATAGACATAAT-CTTATCATTAGGATAAACCATATTGATGCTTTTGTTCCGCAA
1 GATTAGGCACCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATGATTTTTTTTTGCAA
* * ** ** ** * * *
3526637 G-ACATGC-TTT-TTTCCCACAAATTATTGTAATGTCTAAGTT-TGCGCCTCAAATGAGACAAAC
65 GAAAAT-CTTTTCTTTGCCTTATTTTATTG-AAAATCAAAGTTAT-C-CCTTAAATAAGACAAAC
* ** * * * **
3526698 ATTGATTCTAGTGATGATCTTCATTCATTTTGT
126 ATTGATTCTCGCAAAG-TCTCCATTCCTTTTAA
* * *
3526731 GATTAGGCACCACAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGGATG
1 GATTAGGCACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGCAAG
* * * * **
3526796 GAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTAATCCCTTAAATAAAACAAGCACCG
66 AAAATCTTTTCTTTGCCTTATTTTATTGAAAATCAAAGTT-ATCCCTTAAATAAGACAAACATTG
*
3526861 ATTCTCGCAACAGTCTCCATTCCTTTCAA
130 ATTCTCGCAA-AGTCTCCATTCCTTTTAA
* * * ** ** * **
3526890 GA-TGGGAAGCCA-AAACACATTCCCTTCATTAGGATACATGGCATTGAT-ACTTTGGTGTCACA
1 GATTAGGCA-CCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGA-TTTTTTTTTGCA
* * *
3526952 AGAAAAGCTTTTCTTT-CC--ATCATTATTGATAGAATCAAAGTT-TGCCTCTTATATAAGACAA
64 AGAAAATCTTTTCTTTGCCTTAT-TTTATTGA-A-AATCAAAGTTAT-CC-CTTAAATAAGACAA
* * ** *
3527013 ACATT-ACTACTCATGCAAA-TCCCCATTTTTTTTAG
124 ACATTGA-TTCTC--GCAAAGTCTCCATTCCTTTTAA
* * * * ** * * * *
3527048 GATTAGGCACCATAGACATAAT-CTTCTCATTAGGATAAACCATTTTGATGCTTTTGTTTCGCAA
1 GATTAGGCACCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATGATTTTTTTTTGCAA
** ** * ** * * * *
3527112 G-AAATGC-TTT-TTT-CCCAACAATTATTGTAAAGTCTTAGTTTGTGCCTCAAATGAGACAAAC
65 GAAAAT-CTTTTCTTTGCCTTA-TTTTATTG-AAAATCAAAG-TTATCCCTTAAATAAGACAAAC
* ** * * * **
3527173 ATTGATTCTGGTGATGATCTTCATTCATTTTGT
126 ATTGATTCTCGCAAAG-TCTCCATTCCTTTTAA
*
3527206 GATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTTTGCA
1 GATTAGGCACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGA--TTTTTTTTTGCA
* * * *
3527271 TGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGCAT
64 AGAAAATCTTTTCTTTGCCTTATTTTATTGAAAATCAAAGTT-ATCCCTTAAATAAGACAAACAT
* * *
3527336 CGATTCTCACAACAGTCTCCATTCCTTTCAA
128 TGATTCTCGCAA-AGTCTCCATTCCTTTTAA
* * * * ** * ** * *
3527367 GATTAAGAAGCCA-AAACACATTCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAA
1 GATTAGGCA-CCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGCAA
* * * *** * *
3527431 AAAAAGCTTTTCTTT-TCTCCGTTT-TTGATAGAATCAAAGTTTATCTCTTATATAAGACAAACA
65 GAAAATCTTTTCTTTGCCTTATTTTATTGA-A-AATCAAAG-TTATCCCTTAAATAAGACAAACA
* * * * **
3527494 -TGAAT-ACGCATACAAATCCCCATT-CTTTTCTT
127 TTGATTCTCGC--A-AAGTCTCCATTCCTTTT-AA
* * * * * * ***
3527526 GATTAGGCACCATAAACATAGT-CTTCTCATTAGGATACATTATATTGATGCTTTGGATTTGCAA
1 GATTAGGCACCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATGATTTTTTTTTGCAA
* *** * * * * * *
3527590 G-AAATGCTTTT-TTCCTGCC--AATTT-TTGTAGGGTCTAAGTTCGTGCCTCAAATGAGGCAAA
65 GAAAAT-CTTTTCTT--TGCCTTATTTTATTG-AAAATCAAAGTT-ATCCCTTAAATAAGACAAA
* * * ** * **
3527650 CATGGATTCTAGTGATAA--CTTGATTCATTTTGT
125 CATTGATTCTCG-CA-AAGTCTCCATTCCTTTTAA
* * * * * **
3527683 GATTAAGCACTAGAAAGACATTCTCC-TCATTAGGATAAATGATATTGATAATTTGCTTTTGCCA
1 GATTAGGCACCATAAACACATTC-CCTTCATTAGGATAAATGATATTGATGATTTTTTTTTG-CA
* * * * * * *
3527747 AG-AAATCTTATCTTTGCCTTATTTTCCTT-AAAATCAAAATTCGTTCCTTAAATAAGATAAGCA
64 AGAAAATCTTTTCTTTGCCTTATTTT-ATTGAAAATCAAAGTT-ATCCCTTAAATAAGACAAACA
* ** * *
3527810 TCGATTCTCATAATAGTCTCCTTTCCTTTCAA
127 TTGATTCTCGCAA-AGTCTCCATTCCTTTTAA
* * * *
3527842 GATTGGGAAACCA-AAACACATTCCCTTCATTAGGATACATGACATTGATG
1 GATTAGG-CACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATG
3527892 CTTTGGTGTC
Statistics
Matches: 1396, Mismatches: 415, Indels: 264
0.67 0.20 0.13
Matches are distributed among these distances:
152 50 0.04
153 27 0.02
154 15 0.01
155 81 0.06
156 94 0.07
157 108 0.08
158 542 0.39
159 325 0.23
160 49 0.04
161 91 0.07
162 11 0.01
163 3 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (157 bp):
GATTAGGCACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGCAAG
AAAATCTTTTCTTTGCCTTATTTTATTGAAAATCAAAGTTATCCCTTAAATAAGACAAACATTGA
TTCTCGCAAAGTCTCCATTCCTTTTAA
Found at i:3526870 original size:475 final size:475
Alignment explanation
Indices: 3525777--3528112 Score: 3271
Period size: 475 Copynumber: 4.9 Consensus size: 475
3525767 AGTTTGTGCC
* *
3525777 TCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC-TCCTTAGGATAAATGGTATTGATGA
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCTTCATTAGGATAAATGATATTGATGA
* * * * *
3525841 TTTTCTTTTACATAGAAATCTTTTCTTTGCCCTATTTTCCTT-AAAATCAAAGTTCTTCCCTTAA
65 TTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTT-CTTGAAAATCAAAGTTCATCCCTTAA
* * * *
3525905 ATAAGACACGCATCGATTCTCATAATAGTCTCCACTCCTTTCAAGATGGGAAGCCAAAACACATT
129 ATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATT
* *
3525970 CCCTTCATTAGAATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATT
194 CCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATT
3526035 TTTGATAGAATCAAAGTTTGCCTCTTATATAAG--AAACATTACTACTCATGCAAATCCCCA-TT
259 TTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTT
*
3526097 TTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTCTTGTT
324 TTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTT
* **
3526162 TCGCAAGAAAAGCTTTTTT-CCA-AAATTATTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAA
389 TCGCAAGAAATGCTTTTTTCCCACAAATTATTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAA
* *
3526225 ACATTAATTCTAGTGATGATAT
454 ACATTGATTCTAGTGATGATCT
*
3526247 TCATTCA-TTT-TGA--AAGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
* * *
3526308 TTTTTTTTGGATGAAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCGAAGTTCATCCCTTAAAT
66 TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
* *
3526373 AAGACAAGCATTGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
131 AAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
** * * *
3526438 CTTCATTAGGGCACATGGCATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTTTCAACATTTT
196 CTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
*
3526503 TGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
261 TGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
* *
3526568 TTTAGGATTAGGCACCATAGACATAATCTTATCATTAGGATAAACCATATTGATGCTTTTGTTCC
326 TTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTC
* * *
3526633 GCAAGACATGCTTTTTTCCCACAAATTATTGTAATGTCTAAGTTTGCGCCTCAAATGAGACAAAC
391 GCAAGAAATGCTTTTTTCCCACAAATTATTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAAC
3526698 ATTGATTCTAGTGATGATCT
456 ATTGATTCTAGTGATGATCT
* *
3526718 TCATTCATTTTGTGATTAGGCACCACAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
* *
3526783 TTTTTTTTGGATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTAATCCCTTAAAT
66 TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
* * *
3526848 AAAACAAGCACCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
131 AAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
* * * *
3526913 CTTCATTAGGATACATGGCATTGATACTTTGGTGTCACAAGAAAAGCTTTTCTTTCCATCATTAT
196 CTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
3526978 TGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
261 TGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
*
3527043 TTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATTTTGATGCTTTTGTTTC
326 TTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTC
*
3527108 GCAAGAAATGCTTTTTTCCCA-ACAATTATTGTAAAGTCTTAGTTTGTGCCTCAAATGAGACAAA
391 GCAAGAAATGCTTTTTTCCCACA-AATTATTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAA
*
3527172 CATTGATTCTGGTGATGATCT
455 CATTGATTCTAGTGATGATCT
3527193 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGA-
3527258 TTTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAA
65 -TTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAA
**
3527323 ATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATTAAGAAGCCAAAACACAT
129 ATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACACAT
* * * * *
3527388 TCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAAAAAAGCTTTTCTTTTCTCCGT
193 TCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCAT
** * * * *
3527453 TTTTGATAGAATCAAAGTTTATCTCTTATATAAGACAAACATGAATACGCATACAAATCCCCATT
258 TTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATT
* * * ** *
3527518 CTTTTCTT--GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATTATATTGATGCTTTG
323 -TTTT-TTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTT
** * * ** *
3527581 GATTT-GCAAGAAATGCTTTTTTCCTGCCAATTTTTGTAGGGTCTAAGTTCGTGCCTCAAATGAG
386 G-TTTCGCAAGAAATGCTTTTTTCCCACAAATTATTGTAAAGTCTAAGTTTGTGCCTCAAATGAG
* * *
3527645 GCAAACATGGATTCTAGTGAT-AACT
450 ACAAACATTGATTCTAGTGATGATCT
* * * * *
3527670 TGATTCATTTTGTGATTAAGCACTAGAAAGACATTCTCC-TCATTAGGATAAATGATATTGATAA
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCTTCATTAGGATAAATGATATTGATGA
** * * * * *
3527734 TTTGCTTTTGCCA-AGAAATCTTATCTTTGCCTTATTTTCCTT-AAAATCAAAATTCGTTCCTTA
65 TTTTTTTTTG-CATGGAAATCTTTTCTTTGCCTTATTTT-CTTGAAAATCAAAGTTCATCCCTTA
* * * * *
3527797 AATAAGATAAGCATCGATTCTCATAATAGTCTCCTTTCCTTTCAAGATTGGGAAACCAAAACACA
128 AATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACACA
* * * *
3527862 TTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTCCTTTCCATCG
192 TTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCA
* * * * ***
3527927 TTTTTGATAGAATCAAGGTTTGCCTCTCATATAAGACAAACATGAATACTCAAATAAATCCCCAT
257 TTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCAT
* * ** * * * *
3527992 TCTTTTCTT--GATTAGGCATCATAAACATAGCCTTCTGATTAGGATAGACGATATTGACG-TTT
322 T-TTTT-TTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTT
*** * *
3528054 TAGTTAT-GCAAG-AATGGGATTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCA
385 T-GTT-TCGCAAGAAATGCTTTTTTCCCACAAATTATTGTAAAGTCTAAGTTTGTGCCTCA
3528113 TTCATTTTGT
Statistics
Matches: 1691, Mismatches: 151, Indels: 44
0.90 0.08 0.02
Matches are distributed among these distances:
465 5 0.00
466 242 0.14
468 30 0.02
469 84 0.05
470 10 0.01
471 66 0.04
472 3 0.00
473 3 0.00
474 45 0.03
475 775 0.46
476 5 0.00
477 164 0.10
478 250 0.15
479 7 0.00
480 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (475 bp):
TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
AAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
CTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
TGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
TTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTC
GCAAGAAATGCTTTTTTCCCACAAATTATTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAAC
ATTGATTCTAGTGATGATCT
Found at i:3528780 original size:158 final size:156
Alignment explanation
Indices: 3528123--3529729 Score: 629
Period size: 158 Copynumber: 10.2 Consensus size: 156
3528113 TTCATTTTGT
* * * * *
3528123 GATTAGGCACTATAAACACATTCTCC-TCCTTAGGATAAATGGTATTGATGATTTTCTTTTACAT
1 GATTAGGCACCATAAACACATTC-CCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGCA-
* **
3528187 AG-AAATCTTTTCTTTGCC-CTATTTTCCTT-AAAATCAAAGTTCTTCCCTTAAATAAGACACGC
64 AGAAAATCTTTTCTTTGCCAC-ATTTT-ATTGAAAATCAAAG-T-TTCCCTTAAATAAGACAAAC
* ** * *
3528249 ATCGATTCTCATAATAGTCTCCACTCCTTTCAA
125 ATTGATTCTCGCAA-AGTCTCCATTCCTTTTAA
* * * * ** ** * *
3528282 GA-TGGGAAGCCA-AAACACATTCCCTTCATTAGAATACATGGCATTGAT-ACTTTGGTGTCGCA
1 GATTAGGCA-CCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGA-TTTTTTTTTGCA
* *
3528344 AGAAAAGCTTTTCTTT-CCACCA-TTT-TTGATAGAATCAAAGTTTGCCTCTTATATAAG--AAA
64 AGAAAATCTTTTCTTTGCCA-CATTTTATTGA-A-AATCAAAGTTT-CC-CTTAAATAAGACAAA
* * * *
3528404 CATT-ACTACTCATGCAAA-TCCCCATT-TTTTTAG
124 CATTGA-TTCTC--GCAAAGTCTCCATTCCTTTTAA
* * * * ** * * * *
3528437 GATTAGGCACCATAGACATAAT-CTTCTCATTAGGATAAACCATATTGATGCTCTTGTTTCGCAA
1 GATTAGGCACCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATGATTTTTTTTTGCAA
* ** * * * *
3528501 GAAAAGC-TTT-TTT-CCA-AAATTATTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAAACAT
65 GAAAATCTTTTCTTTGCCACATTTTATTG-AAAATCAAAGTTT-C-CCTTAAATAAGACAAACAT
* * ** * * * *
3528562 TAATTCTAGTGATGATATTCATTCATTTT--
127 TGATTCTCGCAAAG-TCTCCATTCCTTTTAA
* * * *
3528591 GA--AAGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGGATG
1 GATTAGGCACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGCAAG
** * * *
3528654 AAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCGAAGTTCATCCCTTAAATAAGACAAGCATTG
66 AAAATCTTTTCTTTGCCACATTTTATTGAAAATCAAAGTT--TCCCTTAAATAAGACAAACATTG
*
3528719 ATTCTCGCAACAGTCTCCATTCCTTTCAA
129 ATTCTCGCAA-AGTCTCCATTCCTTTTAA
* * ** * ** * * * *
3528748 GA-TGGGAAGCCA-AAACACATTCCCTTCATTAGGGCACATGGCATTGATGCTTTGGTGTCT-CA
1 GATTAGGCA-CCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTT-TTTTTTGCA
* * * * *
3528810 AGAAAAGCTTTTCTTTTCAACA-TTT-TTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAAC
64 AGAAAATCTTTTCTTTGCCACATTTTATTGA-A-AATCAAAG-TT-TCCCTTAAATAAGACAAAC
* * ** *
3528873 ATT-ACTACTCATGCAAA-TCCCCATTTTTTTTAG
125 ATTGA-TTCTC--GCAAAGTCTCCATTCCTTTTAA
* * * * ** * * **
3528906 GATTAGGCACCATAGACATAAT-CTTATCATTAGGATAAACCATATTGATGCTTTTGTTCCGCAA
1 GATTAGGCACCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATGATTTTTTTTTGCAA
* * ** ** * * *
3528970 G-ACATGC-TTT-TTTCCCACAAATTATTGTAATGTCTAAGTTTGCGCCTCAAATGAGACAAACA
65 GAAAAT-CTTTTCTTTGCCACATTTTATTG-AAAATCAAAGTTT-C-CCTTAAATAAGACAAACA
* ** * * * **
3529032 TTGATTCTAGTGATGATCTTCATTCATTTTGT
126 TTGATTCTCGCAAAG-TCTCCATTCCTTTTAA
* * *
3529064 GATTAGGCACCACAAACACATTCCCTTCATTAGGATAAATGATATTGATGA-TTTTTTTTGGATG
1 GATTAGGCACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGCAAG
* ** * * * **
3529128 GAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTAATCCCTTAAATAAAACAAGCACCG
66 AAAATCTTTTCTTTGCCACATTTTATTGAAAATCAAAGTT--TCCCTTAAATAAGACAAACATTG
*
3529193 ATTCTCGCAACAGTCTCCATTCCTTTCAA
129 ATTCTCGCAA-AGTCTCCATTCCTTTTAA
* * * ** ** * **
3529222 GA-TGGGAAGCCA-AAACACATTCCCTTCATTAGGATACATGGCATTGAT-ACTTTGGTGTCACA
1 GATTAGGCA-CCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGA-TTTTTTTTTGCA
* *
3529284 AGAAAAGCTTTTCTTT-CCATCA--TTATTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAA
64 AGAAAATCTTTTCTTTGCCA-CATTTTATTGA-A-AATCAAAGTTT-CC-CTTAAATAAGACAAA
* * ** *
3529346 CATT-ACTACTCATGCAAA-TCCCCATTTTTTTTAG
124 CATTGA-TTCTC--GCAAAGTCTCCATTCCTTTTAA
* * * * ** * * * *
3529380 GATTAGGCACCATAGACATAAT-CTTCTCATTAGGATAAACCATTTTGATGCTTTTGTTTCGCAA
1 GATTAGGCACCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATGATTTTTTTTTGCAA
* ** ** * * *
3529444 G-AAATGC-TTT-TTTCCCACAAATTATTGTAATGTCTAAGTTTGCGCCTCAAATGAGACAAACA
65 GAAAAT-CTTTTCTTTGCCACATTTTATTG-AAAATCAAAGTTT-C-CCTTAAATAAGACAAACA
* ** * * * **
3529506 TTGATTCTAGTGATGATCTTCATTCATTTTGT
126 TTGATTCTCGCAAAG-TCTCCATTCCTTTTAA
* * *
3529538 GATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATG---TTTTTTTGGATG
1 GATTAGGCACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGCAAG
* *** * * * *
3529600 GAAATCTTTTCTTTGCTTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAATAAGTCAAGCATCG
66 AAAATCTTTTCTTTGCCACATTTTATTGAAAATCAAAGTT--TCCCTTAAATAAGACAAACATTG
* * *
3529665 ATTCCCGCAACAGTCTCCGTTCCTTTCAA
129 ATTCTCGCAA-AGTCTCCATTCCTTTTAA
* *
3529694 GA-TGGGAAGCCA-AAACACATTCCCTTCATTAGGATA
1 GATTAGGCA-CCATAAACACATTCCCTTCATTAGGATA
3529730 CATGGCATTG
Statistics
Matches: 1048, Mismatches: 301, Indels: 202
0.68 0.19 0.13
Matches are distributed among these distances:
152 50 0.05
153 27 0.03
154 16 0.02
155 116 0.11
156 143 0.14
157 102 0.10
158 463 0.44
159 120 0.11
160 11 0.01
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.36
Consensus pattern (156 bp):
GATTAGGCACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGCAAG
AAAATCTTTTCTTTGCCACATTTTATTGAAAATCAAAGTTTCCCTTAAATAAGACAAACATTGAT
TCTCGCAAAGTCTCCATTCCTTTTAA
Found at i:3529482 original size:474 final size:474
Alignment explanation
Indices: 3528110--3535338 Score: 6881
Period size: 474 Copynumber: 15.0 Consensus size: 474
3528100 AGTTTGTGCC
* *
3528110 TCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC-TCCTTAGGATAAATGGTATTGATGA
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCTTCATTAGGATAAATGATATTGATGA
** * * *
3528174 TTTTCTTTTACATAGAAATCTTTTCTTTGCCCTATTTTCCTT-AAAATCAAAGTTCTTCCCTTAA
65 TTTT-TTTTGGATGGAAATCTTTTCTTTGCCTTATTTT-CTTGAAAATCAAAGTTCATCCCTTAA
* ** * *
3528238 ATAAGACACGCATCGATTCTCATAATAGTCTCCACTCCTTTCAAGATGGGAAGCCAAAACACATT
128 ATAAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATT
* *
3528303 CCCTTCATTAGAATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATT
193 CCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCTCAAGAAAAGCTTTTCTTTCCACCATT
3528368 TTTGATAGAATCAAAGTTTGCCTCTTATATAAG--AAACATTACTACTCATGCAAATCCCCA-TT
258 TTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTT
*
3528430 TTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTCTTGTT
323 TTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTT
* *
3528495 TCGCAAGAAAAGCTTTTTT-CCA-AAATTATTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAA
388 TCGCAAGAAATGCTTTTTTCCCACAAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAA
* *
3528558 ACATTAATTCTAGTGATGATAT
453 ACATTGATTCTAGTGATGATCT
*
3528580 TCATTCA-TTT-TGA--AAGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGA-
* *
3528641 TTTTTTTTGGATGAAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCGAAGTTCATCCCTTAAAT
65 TTTTTTTTGGATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
*
3528706 AAGACAAGCATTGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
130 AAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
** * * *
3528771 CTTCATTAGGGCACATGGCATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTTTCAACATTTT
195 CTTCATTAGGATACATGGCATTGATACTTTGGTGTCTCAAGAAAAGCTTTTCTTTCCACCATTTT
*
3528836 TGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
260 TGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
* *
3528901 TTTAGGATTAGGCACCATAGACATAATCTTATCATTAGGATAAACCATATTGATGCTTTTGTTCC
325 TTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTC
* *
3528966 GCAAGACATGCTTTTTTCCCACAAATTATTGTAATGTCTAAGTTTGCGCCTCAAATGAGACAAAC
390 GCAAGAAATGCTTTTTTCCCACAAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAAC
3529031 ATTGATTCTAGTGATGATCT
455 ATTGATTCTAGTGATGATCT
* *
3529051 TCATTCATTTTGTGATTAGGCACCACAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
*
3529116 TTTTTTTGGATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTAATCCCTTAAATA
66 TTTTTTTGGATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAATA
* *
3529181 AAACAAGCACCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCC
131 AGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCC
* * *
3529246 TTCATTAGGATACATGGCATTGATACTTTGGTGTCACAAGAAAAGCTTTTCTTTCCATCATTATT
196 TTCATTAGGATACATGGCATTGATACTTTGGTGTCTCAAGAAAAGCTTTTCTTTCCACCATTTTT
3529311 GATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTTT
261 GATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTTT
*
3529376 TTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATTTTGATGCTTTTGTTTCG
326 TTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCG
*
3529441 CAAGAAATGCTTTTTTCCCACAAATTATTGTAATGTCTAAGTTTGCGCCTCAAATGAGACAAACA
391 CAAGAAATGCTTTTTTCCCACAAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAACA
3529506 TTGATTCTAGTGATGATCT
456 TTGATTCTAGTGATGATCT
3529525 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATG--
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
*
3529588 TTTTTTTGGATGGAAATCTTTTCTTTGCTTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAATA
66 TTTTTTTGGATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAATA
* * *
3529653 AGTCAAGCATCGATTCCCGCAACAGTCTCCGTTCCTTTCAAGATGGGAAGCCAAAACACATTCCC
131 AGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCC
* * *
3529718 TTCATTAGGATACATGGCATTGATGCTTTGGTGTCTCCAGAAAAGCTTTTCTTTTCACCATTTTT
196 TTCATTAGGATACATGGCATTGATACTTTGGTGTCTCAAGAAAAGCTTTTCTTTCCACCATTTTT
* * * ***
3529783 GATAGAATCAAAGTTTGCCTCTCATATAAGACAAACATGAATACTCAAATAAATCCCCATTCTTT
261 GATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATT-TTT
* * ** * * * *
3529848 TCTT--GATTAGGCATCATAAACATAGCCTTCTGATTAGGATAGACGATATTGACG-TTTTAGTT
325 T-TTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTT-GTT
*** * * * * * ****
3529910 AT-GCAAG-AATGGGATTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTC-ATTCATTTT
388 -TCGCAAGAAATGCTTTTTTCCCACAAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACA
*** ** * * *
3529972 GTGATT-AGGC-ACT-ATAAAC-
452 AACATTGATTCTAGTGATGATCT
* * * * ** ** ** * **
3529991 ACATTC-TCCTCCTTAG-GATAAATGGTA-T-TGATGATTTTCTTTTACA-TA-GA-AATCTTTT
1 TCATTCAT--T--TT-GTGAT-TA-GGCACTATAAACACATTCCCTT-CATTAGGATAA-ATGAT
* * * *** * ** ** * *
3530049 CTTTGCCCT-ATTTTCCTTAAAAT-CAAAGTTCTTCCCTTAAATAAGACACGCATCGATTC-TCA
57 -ATTG--ATGATTTT-TTTTGGATGGAAA--TCTTTTCTT---T--G-C-CTTAT--TTTCTTGA
* * * * * * ** ** *
3530111 TAAT---AGTCTCCACTCCTTTCAAGATGGGAAGCCAAAACA-C-ATTCCCTTCATTAGAATACA
107 AAATCAAAGT-T-CA-TCCCTT-AA-AT---AAGAC-AAGCATCGATTCTC-GCAACAGTCTCCA
** * * ** * * * * * * ** *** ** * * * *
3530171 TGGCATTGATACTTTGG-TGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAG-AATCAAA
162 TTCCTTTCA-AGATGGGAAG-C-CAA-AACA-CATTCCCTT-CATTAGGATACATGGCATTGATA
* ** * * * * *
3530234 GTTT-GCCTCTTATATAAGAAACATTACTACTCATGCAAATCC-CCATTTTTTTAGGATTAGGCA
221 CTTTGGTGTCTCA-AGAA-AAGC-TT--T--TC-T----TTCCACCA--TTTTT--GA-TA-GAA
* * * * * * * ** **
3530297 CCATAGACATAAT-CTTCTCAT-TAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAGGGCT
268 TCA-A-A-GT-TTGCCTCTTATATAAGACAAA-C--ATT-A--CTACT-CAT-GC-A-AA-----
* * * * * *
3530360 TTTTTCCCACCAATTATTGTAAAGTCTAAG-TTTGCGC-CTCAAATGAGAC-GAA-CAT-TGATT
314 ----T-CC-CC-ATT-TT-T----TTTAGGATTAG-GCAC-C--AT-AGACATAATCTTCTCA-T
* * * * ** * ** *** *
3530420 CTAGTGAT-GATCTTCATTCAT--TTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGAT
360 -TAG-GATAAACCAT-ATTGATGCTTT-TG-TTTCGCA--AGAAATGC-TT---TT--TTCCCAC
* ** * * ** *** ** * * * **** *** * * ** **
3530482 AAATGATATTGATGATTTTTTTTTTGCATGGAACTCTTTTCTTTGCCTT-ATTTTCTTGAAAATC
412 AAATTATTGTAAAGTCTAAGTTTGCGCCT-CAAAT-GAGAC-AAACATTGATTCTAGTGATGATC
3530546 AAAGT
474 ----T
* ** ** * * * *
3530551 TCATCTC-TTAAATAAGACAAGCACCAATTCTCATAACAGTCTCCATTCCTTTCAAGACTAGGAA
1 TCAT-TCATT--TTGTGATTAG--GC-A--CT-ATAA-A--C-ACATTCCCTTC---ATTAGG-A
* ** * * * *** *
3530615 GCCAAAACACATT-CT-CTTCATTAGGATACATGGCATTGATGCTTTGGGGTCGCAAAAAAAGCT
49 --TAAATGATATTGATGATT--TT-TTTT-----G----GA-----T---G--G-----AAATCT
*** * * * * * * *
3530678 TTTCTTT-CCTCCGTTT-TTGATATAATCAAATTTTATCTCTTATATAAGACAAACAT-GAAT-A
85 TTTCTTTGCCTTATTTTCTTGA-A-AATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCT
* * * ** * * * * *
3530739 CACATACAAATC-CCAATTCTTTTCTTGATTAGGCA-CCATAAACATAGT-CTTCTCATTAGGAT
148 CGCA-AC-AGTCTCC-ATTCCTTTCAAGA-TGGGAAGCCA-AAACACATTCCCT-TCATTAGGAT
* *** * * * * *
3530801 ACGTTATATTGATGCTTTGGAT-T-TGCAAGAAATGCTTTT-TTCCCGCCAATTTTTG-TA-AGG
207 ACATGGCATTGATACTTTGG-TGTCT-CAAGAAAAGCTTTTCTTTCCACC-ATTTTTGATAGA-A
* * * * * * * *** **
3530861 TCTAAATTTCTGCCTC--AAATGAGGCAAACATGGATTCTAGTGATG--AA-CTTGATTCATTTT
268 TC-AAAGTT-TGCCTCTTATATAAGACAAACAT---TACTACTCATGCAAATCCCCATTTTTTTT
* * * * * ** * *
3530921 -GTGATTAAGCA-C-TAGAAAGACATTCTCCTTATTAGGATAAATGATATTGATGATTTTTTTTT
328 AG-GATTAGGCACCATAGACATA-A-TCTTCTCATTAGGATAAACCATATTGATG-CTTTTGTTT
* * * * * * * * **** * *
3530983 TGCATGGAAAT-CTTATCTTTGCC-C-TATT-TTCCTTAAAATCAAAATTCATTCCTTAAATAAG
389 CGCA-AGAAATGCTT-T-TTTCCCACAAATTATT--GTAAAGTCTAAGTTTGCGCCTCAAATGAG
** * *
3531044 ACAGGCATTGATTCTCGTAAT-AGTCT
449 ACAAACATTGATTCTAGTGATGA-TCT
* *** * * * * * **
3531070 CCATTTC-TTTCAAGATTGGGAAGCCA-AAACACAGTCCCTTCATTAGGATATATGGCATTGATG
1 TCA-TTCATTTTGTGATTAGGCA-CTATAAACACATTCCCTTCATTAGGATAAATGATATTGATG
* * * * * * * *
3531133 CTTTGGTGTCGCA-GGAAAAGCGTTCCTTT--C-TATCATTT-TTGATAGAATCAAAGTT--TGC
64 ATTT-TTTTTGGATGG-AAATCTTTTCTTTGCCTTAT--TTTCTTGA-A-AATCAAAGTTCAT-C
* * * ** * * * ** * *
3531191 CTCTTATATAAGACAAACAT-GAATGCTCATAAAAATCCCCATT-CTTTCTTGATTAGGCA-CCA
122 C-CTTAAATAAGACAAGCATCG-ATTCTCGCAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCA
* ** * * * ** *** * * * *
3531253 TAA-ACATAGCCTTCTGATTAGAATAGACGATATTGACGTTTTAGT-TATGCAAGAAAGGGATTT
184 AAACACATTCCCTTC--ATTAGGATACATGGCATTGATACTTTGGTGTCT-CAAGAAA-AGCTTT
* * * * * *
3531316 TC---CCACCAATTTTTG-TA-AAGTCTAAGTTTGTGCCTC--AAATGAGACAATCA-TA-GATT
245 TCTTTCCACC-ATTTTTGATAGAA-TCAAAG-TT-TGCCTCTTATATAAGACAAACATTACTACT
* ** ** *
3531372 CTAGTG-ATGATCTTCA--TTCATTAGGA-TA--AACCATAGACATAATCTTCTCATTAGGATAA
306 C-A-TGCA-AATCCCCATTTTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAA
* * *
3531431 ACCATATTGATGCTTTTGTTTCGCAAGAAAGGCTTTTTTCCCACCAGTTATTGTAAAGTCTAAGT
368 ACCATATTGATGCTTTTGTTTCGCAAGAAATGCTTTTTTCCCACAAATTATTGTAAAGTCTAAGT
* *
3531496 TTGCACCTCAAATGAGACAAACGTTGATTCTAGTGATGATCT
433 TTGCGCCTCAAATGAGACAAACATTGATTCTAGTGATGATCT
* *
3531538 TCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC-TCTTTAGGATAAATGGTATTGATGA
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCTTCATTAGGATAAATGATATTGATGA
** * * * * * * *
3531602 TTTTCTTTTACATGGAAAACATTTCTTAGCCCTATTTTCCAT-AAGATCAAAGTTCTTCCCTTAA
65 TTTT-TTTTGGATGGAAATCTTTTCTTTGCCTTATTTT-CTTGAAAATCAAAGTTCATCCCTTAA
* ** *
3531666 ATAAGACATGCATCGATTCTCATAATAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATT
128 ATAAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATT
* *
3531731 CCCTTGATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATT
193 CCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCTCAAGAAAAGCTTTTCTTTCCACCATT
3531796 TTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCA-TT
258 TTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTT
3531860 TTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGC---TGTT
323 TTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTT
* * *
3531922 TCGCAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGGTTGCGCCTCAAATGAGACAA
388 TCGCAAGAAATGCTTTTTTCCCACAAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAA
* *
3531987 ATATTAATTCTAGTGATGATCT
453 ACATTGATTCTAGTGATGATCT
* * * *
3532009 TCTTTCATTTTGTGATTACGCACTATAATCACATTCCCTTAATTAGGATAAATGATATTGATGAT
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGA-
*
3532074 TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
65 TTTTTTTTGGATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
*
3532139 AAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACAATCC
130 AAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
* *
3532204 CTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAACTTTTCTTTCCACCATTTT
195 CTTCATTAGGATACATGGCATTGATACTTTGGTGTCTCAAGAAAAGCTTTTCTTTCCACCATTTT
*
3532269 TGATAGAATCAAAGTTTGCTTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
260 TGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
*
3532334 TTTAGGA-TAGGCACAATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTC
325 TTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTC
* * * *
3532398 GCAAGAAAGGCTTTTTTCCCACCAGTTATTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAAAC
390 GCAAGAAATGCTTTTTTCCCACAAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAAC
*
3532463 GTTGATTCTAGTGATGATCT
455 ATTGATTCTAGTGATGATCT
* *
3532483 TCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC-TCTTTAGGATAAATGGTATTGATGA
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCTTCATTAGGATAAATGATATTGATGA
** * * * * *
3532547 TTTTCTTTTACATGGAAAACTTTTCTTTGCCCTATTTTCCAT-AAGATCAAAGTTCTTCCCTTAA
65 TTTT-TTTTGGATGGAAATCTTTTCTTTGCCTTATTTT-CTTGAAAATCAAAGTTCATCCCTTAA
* ** *
3532611 ATAAGACACGCATCGATTCTCATAATAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATT
128 ATAAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATT
*
3532676 CCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATT
193 CCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCTCAAGAAAAGCTTTTCTTTCCACCATT
3532741 TTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCA-TT
258 TTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTT
3532805 TTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGC---TGTT
323 TTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTT
* * *
3532867 TCGCAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGGTTGCGCCTCAAATGAGACAA
388 TCGCAAGAAATGCTTTTTTCCCACAAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAA
* *
3532932 ATATTAATTCTAGTGATGATCT
453 ACATTGATTCTAGTGATGATCT
* * * *
3532954 TCTTTCATTTTGTGATTACGCACTATAATCACATTCCCTTAATTAGGATAAATGATATTGATGAT
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGA-
*
3533019 TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
65 TTTTTTTTGGATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
*
3533084 AAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACAATCC
130 AAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
* *
3533149 CTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAACTTTTCTTTCCACCATTTT
195 CTTCATTAGGATACATGGCATTGATACTTTGGTGTCTCAAGAAAAGCTTTTCTTTCCACCATTTT
*
3533214 TGATAGAATCAAAGTTTGCTTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
260 TGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
*
3533279 TTTAGGA-TAGGCACAATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTC
325 TTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTC
* * * *
3533343 GCAAGAAAGGCTTTTTTCCCACCAGTTATTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAAAC
390 GCAAGAAATGCTTTTTTCCCACAAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAAC
*
3533408 GTTGATTCTAGTGATGATCT
455 ATTGATTCTAGTGATGATCT
* *
3533428 TCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC-TCTTTAGGATAAATGGTATTGATGA
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCTTCATTAGGATAAATGATATTGATGA
** * * * * *
3533492 TTTTCTTTTACATGGAAAACTTTTCTTTGCCCTATTTTCCAT-AAGATCAAAGTTCTTCCCTTAA
65 TTTT-TTTTGGATGGAAATCTTTTCTTTGCCTTATTTT-CTTGAAAATCAAAGTTCATCCCTTAA
* ** *
3533556 ATAAGACACGCATCGATTCTCATAATAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATT
128 ATAAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATT
*
3533621 CCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATT
193 CCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCTCAAGAAAAGCTTTTCTTTCCACCATT
3533686 TTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCA-TT
258 TTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTT
3533750 TTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGC---TGTT
323 TTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTT
* * *
3533812 TCGCAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGGTTGCGCCTCAAATGAGACAA
388 TCGCAAGAAATGCTTTTTTCCCACAAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAA
* *
3533877 ATATTAATTCTAGTGATGATCT
453 ACATTGATTCTAGTGATGATCT
* * * *
3533899 TCTTTCATTTTGTGATTACGCACTATAATCACATTCCCTTAATTAGGATAAATGATATTGATGAT
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGA-
*
3533964 TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
65 TTTTTTTTGGATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
*
3534029 AAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACAATCC
130 AAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
* *
3534094 CTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAACTTTTCTTTCCACCATTTT
195 CTTCATTAGGATACATGGCATTGATACTTTGGTGTCTCAAGAAAAGCTTTTCTTTCCACCATTTT
*
3534159 TGATAGAATCAAAGTTTGCTTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
260 TGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
*
3534224 TTTAGGA-TAGGCACAATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTC
325 TTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTC
* * * *
3534288 GCAAGAAAGGCTTTTTTCCCACCAGTTATTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAAAC
390 GCAAGAAATGCTTTTTTCCCACAAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAAC
*
3534353 GTTGATTCTAGTGATGATCT
455 ATTGATTCTAGTGATGATCT
* *
3534373 TCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC-TCTTTAGGATAAATGGTATTGATGA
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCTTCATTAGGATAAATGATATTGATGA
** * * * * *
3534437 TTTTCTTTTACATGGAAAACTTTTCTTTGCCCTATTTTCCAT-AAGATCAAAGTTCTTCCCTTAA
65 TTTT-TTTTGGATGGAAATCTTTTCTTTGCCTTATTTT-CTTGAAAATCAAAGTTCATCCCTTAA
* ** *
3534501 ATAAGACACGCATCGATTCTCATAATAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATT
128 ATAAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATT
*
3534566 CCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATT
193 CCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCTCAAGAAAAGCTTTTCTTTCCACCATT
*
3534631 TTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCTCCA-TT
258 TTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTT
3534695 TTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGC---TGTT
323 TTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTT
* * *
3534757 TCGCAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGGTTGCGCCTCAAATGAGACAA
388 TCGCAAGAAATGCTTTTTTCCCACAAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAA
* *
3534822 ATATTAATTCTAGTGATGATCT
453 ACATTGATTCTAGTGATGATCT
* * * *
3534844 TCTTTCATTTTGTGATTACGCACTATAATCACATTCCCTTAATTAGGATAAATGATATTGATGAT
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGA-
*
3534909 TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
65 TTTTTTTTGGATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
*
3534974 AAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACAATCC
130 AAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
*
3535039 CTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
195 CTTCATTAGGATACATGGCATTGATACTTTGGTGTCTCAAGAAAAGCTTTTCTTTCCACCATTTT
3535104 TGATAGAATCAAAGTTTGCCTCTTATATAAG--AAACATTACTACTCATGCAAATCCCCA-TTTT
260 TGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
* *
3535166 TTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTCTTGTTCC
325 TTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTC
* * *
3535231 GCAAGACATGCTTTTTTCCCACAAATTATTGTAATGTCTAAGTTTGCGCCTCAAATGAGACCAAC
390 GCAAGAAATGCTTTTTTCCCACAAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAAC
3535296 ATTGATTCTAGTGATGATCT
455 ATTGATTCTAGTGATGATCT
3535316 TCATTCATTTTGTGATTAGGCAC
1 TCATTCATTTTGTGATTAGGCAC
3535339 CATGATGACA
Statistics
Matches: 5652, Mismatches: 768, Indels: 676
0.80 0.11 0.10
Matches are distributed among these distances:
465 6 0.00
466 243 0.04
467 27 0.00
468 216 0.04
469 239 0.04
470 108 0.02
471 1746 0.31
472 462 0.08
473 61 0.01
474 1778 0.31
475 104 0.02
476 49 0.01
477 62 0.01
478 4 0.00
479 7 0.00
480 2 0.00
481 5 0.00
482 10 0.00
483 6 0.00
484 2 0.00
486 6 0.00
487 17 0.00
488 9 0.00
489 3 0.00
490 7 0.00
491 15 0.00
492 11 0.00
493 2 0.00
495 1 0.00
496 1 0.00
497 2 0.00
498 1 0.00
501 11 0.00
502 3 0.00
503 9 0.00
504 5 0.00
505 2 0.00
506 2 0.00
507 12 0.00
508 2 0.00
509 8 0.00
510 10 0.00
511 3 0.00
512 3 0.00
513 2 0.00
514 1 0.00
515 2 0.00
517 5 0.00
518 1 0.00
519 9 0.00
520 1 0.00
522 5 0.00
523 11 0.00
524 5 0.00
525 8 0.00
526 2 0.00
527 1 0.00
528 2 0.00
529 7 0.00
530 6 0.00
531 18 0.00
532 12 0.00
533 4 0.00
534 10 0.00
535 3 0.00
536 4 0.00
537 7 0.00
538 4 0.00
539 13 0.00
540 19 0.00
542 2 0.00
543 2 0.00
547 2 0.00
549 18 0.00
551 2 0.00
552 2 0.00
553 6 0.00
554 1 0.00
555 4 0.00
557 2 0.00
558 3 0.00
559 9 0.00
560 4 0.00
561 5 0.00
562 8 0.00
563 5 0.00
564 2 0.00
565 5 0.00
567 1 0.00
568 1 0.00
569 13 0.00
570 2 0.00
571 2 0.00
572 6 0.00
573 2 0.00
574 3 0.00
575 3 0.00
577 3 0.00
579 2 0.00
580 10 0.00
581 12 0.00
582 10 0.00
583 10 0.00
584 14 0.00
587 6 0.00
588 2 0.00
589 9 0.00
590 2 0.00
591 1 0.00
592 2 0.00
594 1 0.00
597 6 0.00
599 3 0.00
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.36
Consensus pattern (474 bp):
TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
TTTTTTTGGATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAATA
AGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCC
TTCATTAGGATACATGGCATTGATACTTTGGTGTCTCAAGAAAAGCTTTTCTTTCCACCATTTTT
GATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTTT
TTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCG
CAAGAAATGCTTTTTTCCCACAAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAACA
TTGATTCTAGTGATGATCT
Found at i:3531425 original size:152 final size:153
Alignment explanation
Indices: 3531249--3531546 Score: 404
Period size: 153 Copynumber: 2.0 Consensus size: 153
3531239 TTGATTAGGC
* * * *
3531249 ACCATAAACATAGCCTTCTGATTAGAATAGACGATATTGACG-TTTTAGTTAT-GCAAGAAAGG-
1 ACCATAAACATAACCTTCTCATTAGAATAAACCATATTGACGCTTTT-GTT-TCGCAAGAAAGGC
* ** *
3531311 GATTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAATCATAGATTCTAG
64 GATTTTCCCACCAATTATTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAAACATAGATTCTAG
3531376 TGATGATCTTCATTCATTAGGATAA
129 TGATGATCTTCATTCATTAGGATAA
* * * * **
3531401 ACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAAGGCTT
1 ACCATAAACATAACCTTCTCATTAGAATAAACCATATTGACGCTTTTGTTTCGCAAGAAAGGCGA
* * *
3531466 TTTTCCCACCAGTTATTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAAACGTTGATTCTAGTG
66 TTTTCCCACCAATTATTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAAACATAGATTCTAGTG
3531531 ATGATCTTCATTCATT
131 ATGATCTTCATTCATT
3531547 TTGTGATTAG
Statistics
Matches: 126, Mismatches: 17, Indels: 5
0.85 0.11 0.03
Matches are distributed among these distances:
151 1 0.01
152 47 0.37
153 78 0.62
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.35
Consensus pattern (153 bp):
ACCATAAACATAACCTTCTCATTAGAATAAACCATATTGACGCTTTTGTTTCGCAAGAAAGGCGA
TTTTCCCACCAATTATTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAAACATAGATTCTAGTG
ATGATCTTCATTCATTAGGATAA
Found at i:3532018 original size:471 final size:471
Alignment explanation
Indices: 3531401--3535338 Score: 6533
Period size: 471 Copynumber: 8.3 Consensus size: 471
3531391 ATTAGGATAA
3531401 ACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAAGGCTT
1 ACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGC--TTGTTTCGCAAGAAAGGCTT
* * *
3531466 TTTTCCCACCAGTTATTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAAACGTTGATTCTAGTG
64 TTTTCCCACCAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAACATTGATTCTAGTG
*
3531531 ATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCT-TTAGGATAAATGGTA
129 ATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCT-TATTAGGATAAATGATA
* * * *
3531595 TTGATGATTTTCTTTTACATGGAAAACATTTCTTAGCCCTATTTTCCAT-AAGATCAAAGTTCTT
192 TTGATGATTTTCTTTTACATGGAAAACTTTTCTTTGCCCTATTTT-CATGAAAATCAAAGTTCAT
* * *
3531659 CCCTTAAATAAGACATGCATCGATTCTCATAATAGTCTCCATTCCTTTCAAGATGGGAAGCCAAA
256 CCCTTAAATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAA
* *
3531724 ACACATTCCCTTGATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTC
321 ACACAATCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTC
3531789 CACCATTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATC
386 CACCATTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATC
3531854 CCCATTTTTTTAGGATTAGGC
451 CCCATTTTTTTAGGATTAGGC
3531875 ACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGC-TGTTTCGCAAGAAAGGCTTTT
1 ACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTGTTTCGCAAGAAAGGCTTTT
* * *
3531939 TTCCCACCAATTATTGTAAAGTCTAAGGTTGCGCCTCAAATGAGACAAATATTAATTCTAGTGAT
66 TTCCCACCAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAACATTGATTCTAGTGAT
* * *
3532004 GATCTTCTTTCATTTTGTGATTACGCACTATAATCACATTCCCTTAATTAGGATAAATGATATTG
131 GATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTT-ATTAGGATAAATGATATTG
* * * * *
3532069 ATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCT
195 ATGATTTTCTTTTACATGGAAAACTTTTCTTTGCCCTATTTTCATGAAAATCAAAGTTCATCCCT
*
3532134 TAAATAAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACAC
260 TAAATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACAC
*
3532199 AATCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAACTTTTCTTTCCACC
325 AATCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACC
*
3532264 ATTTTTGATAGAATCAAAGTTTGCTTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCA
390 ATTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCA
3532329 TTTTTTTTAGGA-TAGGC
455 -TTTTTTTAGGATTAGGC
*
3532346 ACAATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAAGGCTT
1 ACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGC--TTGTTTCGCAAGAAAGGCTT
* * *
3532411 TTTTCCCACCAGTTATTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAAACGTTGATTCTAGTG
64 TTTTCCCACCAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAACATTGATTCTAGTG
*
3532476 ATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCT-TTAGGATAAATGGTA
129 ATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCT-TATTAGGATAAATGATA
* *
3532540 TTGATGATTTTCTTTTACATGGAAAACTTTTCTTTGCCCTATTTTCCAT-AAGATCAAAGTTCTT
192 TTGATGATTTTCTTTTACATGGAAAACTTTTCTTTGCCCTATTTT-CATGAAAATCAAAGTTCAT
* * *
3532604 CCCTTAAATAAGACACGCATCGATTCTCATAATAGTCTCCATTCCTTTCAAGATGGGAAGCCAAA
256 CCCTTAAATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAA
*
3532669 ACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTC
321 ACACAATCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTC
3532734 CACCATTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATC
386 CACCATTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATC
3532799 CCCATTTTTTTAGGATTAGGC
451 CCCATTTTTTTAGGATTAGGC
3532820 ACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGC-TGTTTCGCAAGAAAGGCTTTT
1 ACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTGTTTCGCAAGAAAGGCTTTT
* * *
3532884 TTCCCACCAATTATTGTAAAGTCTAAGGTTGCGCCTCAAATGAGACAAATATTAATTCTAGTGAT
66 TTCCCACCAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAACATTGATTCTAGTGAT
* * *
3532949 GATCTTCTTTCATTTTGTGATTACGCACTATAATCACATTCCCTTAATTAGGATAAATGATATTG
131 GATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTT-ATTAGGATAAATGATATTG
* * * * *
3533014 ATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCT
195 ATGATTTTCTTTTACATGGAAAACTTTTCTTTGCCCTATTTTCATGAAAATCAAAGTTCATCCCT
*
3533079 TAAATAAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACAC
260 TAAATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACAC
*
3533144 AATCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAACTTTTCTTTCCACC
325 AATCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACC
*
3533209 ATTTTTGATAGAATCAAAGTTTGCTTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCA
390 ATTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCA
3533274 TTTTTTTTAGGA-TAGGC
455 -TTTTTTTAGGATTAGGC
*
3533291 ACAATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAAGGCTT
1 ACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGC--TTGTTTCGCAAGAAAGGCTT
* * *
3533356 TTTTCCCACCAGTTATTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAAACGTTGATTCTAGTG
64 TTTTCCCACCAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAACATTGATTCTAGTG
*
3533421 ATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCT-TTAGGATAAATGGTA
129 ATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCT-TATTAGGATAAATGATA
* *
3533485 TTGATGATTTTCTTTTACATGGAAAACTTTTCTTTGCCCTATTTTCCAT-AAGATCAAAGTTCTT
192 TTGATGATTTTCTTTTACATGGAAAACTTTTCTTTGCCCTATTTT-CATGAAAATCAAAGTTCAT
* * *
3533549 CCCTTAAATAAGACACGCATCGATTCTCATAATAGTCTCCATTCCTTTCAAGATGGGAAGCCAAA
256 CCCTTAAATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAA
*
3533614 ACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTC
321 ACACAATCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTC
3533679 CACCATTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATC
386 CACCATTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATC
3533744 CCCATTTTTTTAGGATTAGGC
451 CCCATTTTTTTAGGATTAGGC
3533765 ACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGC-TGTTTCGCAAGAAAGGCTTTT
1 ACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTGTTTCGCAAGAAAGGCTTTT
* * *
3533829 TTCCCACCAATTATTGTAAAGTCTAAGGTTGCGCCTCAAATGAGACAAATATTAATTCTAGTGAT
66 TTCCCACCAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAACATTGATTCTAGTGAT
* * *
3533894 GATCTTCTTTCATTTTGTGATTACGCACTATAATCACATTCCCTTAATTAGGATAAATGATATTG
131 GATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTT-ATTAGGATAAATGATATTG
* * * * *
3533959 ATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCT
195 ATGATTTTCTTTTACATGGAAAACTTTTCTTTGCCCTATTTTCATGAAAATCAAAGTTCATCCCT
*
3534024 TAAATAAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACAC
260 TAAATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACAC
*
3534089 AATCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAACTTTTCTTTCCACC
325 AATCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACC
*
3534154 ATTTTTGATAGAATCAAAGTTTGCTTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCA
390 ATTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCA
3534219 TTTTTTTTAGGA-TAGGC
455 -TTTTTTTAGGATTAGGC
*
3534236 ACAATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAAGGCTT
1 ACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGC--TTGTTTCGCAAGAAAGGCTT
* * *
3534301 TTTTCCCACCAGTTATTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAAACGTTGATTCTAGTG
64 TTTTCCCACCAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAACATTGATTCTAGTG
*
3534366 ATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCT-TTAGGATAAATGGTA
129 ATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCT-TATTAGGATAAATGATA
* *
3534430 TTGATGATTTTCTTTTACATGGAAAACTTTTCTTTGCCCTATTTTCCAT-AAGATCAAAGTTCTT
192 TTGATGATTTTCTTTTACATGGAAAACTTTTCTTTGCCCTATTTT-CATGAAAATCAAAGTTCAT
* * *
3534494 CCCTTAAATAAGACACGCATCGATTCTCATAATAGTCTCCATTCCTTTCAAGATGGGAAGCCAAA
256 CCCTTAAATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAA
*
3534559 ACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTC
321 ACACAATCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTC
3534624 CACCATTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATC
386 CACCATTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATC
*
3534689 TCCATTTTTTTAGGATTAGGC
451 CCCATTTTTTTAGGATTAGGC
3534710 ACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGC-TGTTTCGCAAGAAAGGCTTTT
1 ACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTGTTTCGCAAGAAAGGCTTTT
* * *
3534774 TTCCCACCAATTATTGTAAAGTCTAAGGTTGCGCCTCAAATGAGACAAATATTAATTCTAGTGAT
66 TTCCCACCAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAACATTGATTCTAGTGAT
* * *
3534839 GATCTTCTTTCATTTTGTGATTACGCACTATAATCACATTCCCTTAATTAGGATAAATGATATTG
131 GATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTT-ATTAGGATAAATGATATTG
* * * * *
3534904 ATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCT
195 ATGATTTTCTTTTACATGGAAAACTTTTCTTTGCCCTATTTTCATGAAAATCAAAGTTCATCCCT
*
3534969 TAAATAAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACAC
260 TAAATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACAC
3535034 AATCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACC
325 AATCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACC
3535099 ATTTTTGATAGAATCAAAGTTTGCCTCTTATATAAG--AAACATTACTACTCATGCAAATCCCCA
390 ATTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCA
3535162 TTTTTTTAGGATTAGGC
455 TTTTTTTAGGATTAGGC
* * *
3535179 ACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTCTTGTTCCGCAAGACATGCTT
1 ACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATG--CTTGTTTCGCAAGAAAGGCTT
* * *
3535244 TTTTCCCACAAATTATTGTAATGTCTAAGTTTGCGCCTCAAATGAGACCAACATTGATTCTAGTG
64 TTTTCCCACCAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAACATTGATTCTAGTG
3535309 ATGATCTTCATTCATTTTGTGATTAGGCAC
129 ATGATCTTCATTCATTTTGTGATTAGGCAC
3535339 CATGATGACA
Statistics
Matches: 3237, Mismatches: 188, Indels: 80
0.92 0.05 0.02
Matches are distributed among these distances:
469 89 0.03
470 20 0.01
471 1624 0.50
472 136 0.04
473 33 0.01
474 1317 0.41
475 15 0.00
476 3 0.00
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.36
Consensus pattern (471 bp):
ACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTGTTTCGCAAGAAAGGCTTTT
TTCCCACCAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAACATTGATTCTAGTGAT
GATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTATTAGGATAAATGATATTGA
TGATTTTCTTTTACATGGAAAACTTTTCTTTGCCCTATTTTCATGAAAATCAAAGTTCATCCCTT
AAATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACA
ATCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCA
TTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCAT
TTTTTTAGGATTAGGC
Found at i:3532586 original size:945 final size:945
Alignment explanation
Indices: 3531404--3535338 Score: 7678
Period size: 945 Copynumber: 4.2 Consensus size: 945
3531394 AGGATAAACC
3531404 ATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAAGGCTTTTT
1 ATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAAGGCTTTTT
3531469 TCCCACCAGTTATTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAAACGTTGATTCTAGTGATG
66 TCCCACCAGTTATTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAAACGTTGATTCTAGTGATG
3531534 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCTTTAGGATAAATGGTATTGA
131 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCTTTAGGATAAATGGTATTGA
* *
3531599 TGATTTTCTTTTACATGGAAAACATTTCTTAGCCCTATTTTCCATAAGATCAAAGTTCTTCCCTT
196 TGATTTTCTTTTACATGGAAAACTTTTCTTTGCCCTATTTTCCATAAGATCAAAGTTCTTCCCTT
*
3531664 AAATAAGACATGCATCGATTCTCATAATAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACA
261 AAATAAGACACGCATCGATTCTCATAATAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACA
*
3531729 TTCCCTTGATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCA
326 TTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCA
3531794 TTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCAT
391 TTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCAT
3531859 TTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTGTTTC
456 TTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTGTTTC
3531924 GCAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGGTTGCGCCTCAAATGAGACAAAT
521 GCAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGGTTGCGCCTCAAATGAGACAAAT
3531989 ATTAATTCTAGTGATGATCTTCTTTCATTTTGTGATTACGCACTATAATCACATTCCCTTAATTA
586 ATTAATTCTAGTGATGATCTTCTTTCATTTTGTGATTACGCACTATAATCACATTCCCTTAATTA
3532054 GGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAA
651 GGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAA
3532119 TCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGAT
716 TCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGAT
3532184 GGGAAGCCAAAACACAATCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAA
781 GGGAAGCCAAAACACAATCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAA
3532249 ACTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCTTCTTATATAAGACAAACATTACTAC
846 ACTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCTTCTTATATAAGACAAACATTACTAC
3532314 TCATGCAAATCCCCATTTTTTTTAGGATAGGCACA
911 TCATGCAAATCCCCATTTTTTTTAGGATAGGCACA
3532349 ATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAAGGCTTTTT
1 ATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAAGGCTTTTT
3532414 TCCCACCAGTTATTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAAACGTTGATTCTAGTGATG
66 TCCCACCAGTTATTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAAACGTTGATTCTAGTGATG
3532479 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCTTTAGGATAAATGGTATTGA
131 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCTTTAGGATAAATGGTATTGA
3532544 TGATTTTCTTTTACATGGAAAACTTTTCTTTGCCCTATTTTCCATAAGATCAAAGTTCTTCCCTT
196 TGATTTTCTTTTACATGGAAAACTTTTCTTTGCCCTATTTTCCATAAGATCAAAGTTCTTCCCTT
3532609 AAATAAGACACGCATCGATTCTCATAATAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACA
261 AAATAAGACACGCATCGATTCTCATAATAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACA
3532674 TTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCA
326 TTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCA
3532739 TTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCAT
391 TTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCAT
3532804 TTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTGTTTC
456 TTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTGTTTC
3532869 GCAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGGTTGCGCCTCAAATGAGACAAAT
521 GCAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGGTTGCGCCTCAAATGAGACAAAT
3532934 ATTAATTCTAGTGATGATCTTCTTTCATTTTGTGATTACGCACTATAATCACATTCCCTTAATTA
586 ATTAATTCTAGTGATGATCTTCTTTCATTTTGTGATTACGCACTATAATCACATTCCCTTAATTA
3532999 GGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAA
651 GGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAA
3533064 TCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGAT
716 TCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGAT
3533129 GGGAAGCCAAAACACAATCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAA
781 GGGAAGCCAAAACACAATCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAA
3533194 ACTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCTTCTTATATAAGACAAACATTACTAC
846 ACTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCTTCTTATATAAGACAAACATTACTAC
3533259 TCATGCAAATCCCCATTTTTTTTAGGATAGGCACA
911 TCATGCAAATCCCCATTTTTTTTAGGATAGGCACA
3533294 ATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAAGGCTTTTT
1 ATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAAGGCTTTTT
3533359 TCCCACCAGTTATTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAAACGTTGATTCTAGTGATG
66 TCCCACCAGTTATTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAAACGTTGATTCTAGTGATG
3533424 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCTTTAGGATAAATGGTATTGA
131 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCTTTAGGATAAATGGTATTGA
3533489 TGATTTTCTTTTACATGGAAAACTTTTCTTTGCCCTATTTTCCATAAGATCAAAGTTCTTCCCTT
196 TGATTTTCTTTTACATGGAAAACTTTTCTTTGCCCTATTTTCCATAAGATCAAAGTTCTTCCCTT
3533554 AAATAAGACACGCATCGATTCTCATAATAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACA
261 AAATAAGACACGCATCGATTCTCATAATAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACA
3533619 TTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCA
326 TTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCA
3533684 TTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCAT
391 TTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCAT
3533749 TTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTGTTTC
456 TTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTGTTTC
3533814 GCAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGGTTGCGCCTCAAATGAGACAAAT
521 GCAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGGTTGCGCCTCAAATGAGACAAAT
3533879 ATTAATTCTAGTGATGATCTTCTTTCATTTTGTGATTACGCACTATAATCACATTCCCTTAATTA
586 ATTAATTCTAGTGATGATCTTCTTTCATTTTGTGATTACGCACTATAATCACATTCCCTTAATTA
3533944 GGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAA
651 GGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAA
3534009 TCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGAT
716 TCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGAT
3534074 GGGAAGCCAAAACACAATCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAA
781 GGGAAGCCAAAACACAATCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAA
3534139 ACTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCTTCTTATATAAGACAAACATTACTAC
846 ACTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCTTCTTATATAAGACAAACATTACTAC
3534204 TCATGCAAATCCCCATTTTTTTTAGGATAGGCACA
911 TCATGCAAATCCCCATTTTTTTTAGGATAGGCACA
3534239 ATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAAGGCTTTTT
1 ATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAAGGCTTTTT
3534304 TCCCACCAGTTATTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAAACGTTGATTCTAGTGATG
66 TCCCACCAGTTATTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAAACGTTGATTCTAGTGATG
3534369 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCTTTAGGATAAATGGTATTGA
131 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCTTTAGGATAAATGGTATTGA
3534434 TGATTTTCTTTTACATGGAAAACTTTTCTTTGCCCTATTTTCCATAAGATCAAAGTTCTTCCCTT
196 TGATTTTCTTTTACATGGAAAACTTTTCTTTGCCCTATTTTCCATAAGATCAAAGTTCTTCCCTT
3534499 AAATAAGACACGCATCGATTCTCATAATAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACA
261 AAATAAGACACGCATCGATTCTCATAATAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACA
3534564 TTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCA
326 TTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCA
*
3534629 TTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCTCCAT
391 TTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCAT
3534694 TTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTGTTTC
456 TTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTGTTTC
3534759 GCAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGGTTGCGCCTCAAATGAGACAAAT
521 GCAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGGTTGCGCCTCAAATGAGACAAAT
3534824 ATTAATTCTAGTGATGATCTTCTTTCATTTTGTGATTACGCACTATAATCACATTCCCTTAATTA
586 ATTAATTCTAGTGATGATCTTCTTTCATTTTGTGATTACGCACTATAATCACATTCCCTTAATTA
3534889 GGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAA
651 GGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAA
3534954 TCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGAT
716 TCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGAT
3535019 GGGAAGCCAAAACACAATCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAA
781 GGGAAGCCAAAACACAATCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAA
* *
3535084 GCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTATATAAG--AAACATTACTAC
846 ACTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCTTCTTATATAAGACAAACATTACTAC
*
3535147 TCATGCAAATCCCCA-TTTTTTTAGGATTAGGCACC
911 TCATGCAAATCCCCATTTTTTTTAGGA-TAGGCACA
* * * *
3535182 ATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTCTTGTTCCGCAAGACATGCTTTTT
1 ATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAAGGCTTTTT
* * * * * *
3535247 TCCCACAAATTATTGTAATGTCTAAGTTTGCGCCTCAAATGAGACCAACATTGATTCTAGTGATG
66 TCCCACCAGTTATTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAAACGTTGATTCTAGTGATG
3535312 ATCTTCATTCATTTTGTGATTAGGCAC
131 ATCTTCATTCATTTTGTGATTAGGCAC
3535339 CATGATGACA
Statistics
Matches: 2971, Mismatches: 18, Indels: 4
0.99 0.01 0.00
Matches are distributed among these distances:
942 11 0.00
943 181 0.06
945 2779 0.94
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.36
Consensus pattern (945 bp):
ATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAAGGCTTTTT
TCCCACCAGTTATTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAAACGTTGATTCTAGTGATG
ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCTTTAGGATAAATGGTATTGA
TGATTTTCTTTTACATGGAAAACTTTTCTTTGCCCTATTTTCCATAAGATCAAAGTTCTTCCCTT
AAATAAGACACGCATCGATTCTCATAATAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACA
TTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCA
TTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCAT
TTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTGTTTC
GCAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGGTTGCGCCTCAAATGAGACAAAT
ATTAATTCTAGTGATGATCTTCTTTCATTTTGTGATTACGCACTATAATCACATTCCCTTAATTA
GGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAA
TCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGAT
GGGAAGCCAAAACACAATCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAA
ACTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCTTCTTATATAAGACAAACATTACTAC
TCATGCAAATCCCCATTTTTTTTAGGATAGGCACA
Found at i:3540371 original size:42 final size:42
Alignment explanation
Indices: 3540316--3540425 Score: 184
Period size: 42 Copynumber: 2.6 Consensus size: 42
3540306 TTCTTCTCTC
* *
3540316 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCCCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCCCCTGTCT
* *
3540358 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCCCCTGTCT
3540400 CTCCTCCTATCATCCCTCCTCTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCT
3540426 TCTTTCTCTT
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.09, C:0.48, G:0.03, T:0.40
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCCCCTGTCT
Found at i:3542764 original size:158 final size:155
Alignment explanation
Indices: 3542045--3543735 Score: 647
Period size: 158 Copynumber: 10.8 Consensus size: 155
3542035 GTTTTCATCA
* * * * * * * * * *
3542045 CACCACAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTT-TTTTTTGGATGGAAATC
1 CACCATAAACACATTCCCTTCATTAGGATAAATGACATTGATGCTTTGGTGTCT-CAAGAAAAGC
** * ** *
3542109 TTTTCTTTGCC-TTATTTTCCTTA-AAATCAAAGTTCTTCCCTTAAATAAGACACGCATCGATTC
65 TTTTCTTT-CCAACATTTT--TGATAAATCAAAG-T-TTCCCTTAAATAAGACAAACATTGATTC
** * * *
3542172 TCATAATAGTCTCCACTCCTTTCAAGA-TGGG
125 TCGCAA-AGTCTCCATTCCTTTTAAGATTAGG
* * * * * *
3542203 AAGCCA-AAACACATTCCCTTCATTAGAATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGC
1 CA-CCATAAACACATTCCCTTCATTAGGATAAATGACATTGATGCTTTGGTGTCTCAAGAAAAGC
* * *
3542267 TTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTATATAAG--AAACATT-ACTACT
65 TTTTCTTTCCAACATTTTTGATA-AATCAAAGTTT-CC-CTTAAATAAGACAAACATTGA-TTCT
* * *
3542329 CATGCAAA-TCCCCATT-TTTTTAGGATTAGG
126 C--GCAAAGTCTCCATTCCTTTTAAGATTAGG
* * * * ** * * *
3542359 CACCATAGACATAAT-CTTCTCATTAGGATAAACCATATTGATGCTCTT-GTTTCGCAAGAAAAG
1 CACCATAAACACATTCCCT-TCATTAGGATAAATGACATTGATGCT-TTGGTGTCTCAAGAAAAG
* * * * * * *
3542422 C-CTT-TTTCCAAAATTATTG-TAAAGTCTAAGTTTGCACCTCAAATGAGACAAACATTAATTCT
64 CTTTTCTTTCCAACATTTTTGATAAA-TCAAAGTTT-C-CCTTAAATAAGACAAACATTGATTCT
* ** * * * *
3542484 AGTGATGATATTCATTCATTTT--GCA--A-G
126 CGCAAAG-TCTCCATTCCTTTTAAG-ATTAGG
* * * * * * * *
3542511 CACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTT--TTTTTGGATGAAAATC
1 CACCATAAACACATTCCCTTCATTAGGATAAATGACATTGATGCTTTGGTGTCT-CAAGAAAAGC
* * *
3542574 TTTTCTTTGCCTTA-TTTTCTTGA-AAATCAAAGTTCATCCCTTAAATAAGACAAGCATTGATTC
65 TTTTCTTT-CC-AACATTT-TTGATAAATCAAAGTT--TCCCTTAAATAAGACAAACATTGATTC
* *
3542637 TCGCAACAGTCTCCATTCCTTTCAAGA-TGGG
125 TCGCAA-AGTCTCCATTCCTTTTAAGATTAGG
* ** * *
3542668 AAGCCA-AAACACATTCCCTTCATTAGGGCACATGGCATTGATGCTTTGGTGTCTCAAGAAAAGC
1 CA-CCATAAACACATTCCCTTCATTAGGATAAATGACATTGATGCTTTGGTGTCTCAAGAAAAGC
* * * *
3542732 TTTTCTTTTCAACATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATT-ACTACT
65 TTTTCTTTCCAACATTTTTGATA-AATCAAAG-TT-TCCCTTAAATAAGACAAACATTGA-TTCT
* ** *
3542796 CATGCAAA-TCCCCATTTTTTTTAGGATTAGG
126 C--GCAAAGTCTCCATTCCTTTTAAGATTAGG
* * * * ** * * * * *
3542827 CACCATAGACATAAT-CTTCTCATTAGGATAAACCATATTGATGCTTTTGT-TCCGCAAGACATG
1 CACCATAAACACATTCCCT-TCATTAGGATAAATGACATTGATGCTTTGGTGT-CTCAAGAAAAG
* * * * * *
3542890 C-TTT-TTTCCTACAAATTATTG-TAATGTCTAAGTTTGCGCCTCAAATGAGACAAACATTGATT
64 CTTTTCTTTCC-A-ACATTTTTGATAA-ATCAAAGTTT-C-CCTTAAATAAGACAAACATTGATT
* ** * * * **
3542952 CTAGTGATGATCTTCATTCATTTTGTGATTAGG
124 CTCGCAAAG-TCTCCATTCCTTTTAAGATTAGG
* * * * * * * * * *
3542985 CACCACAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTT-TTTTTTGGATGGAAATC
1 CACCATAAACACATTCCCTTCATTAGGATAAATGACATTGATGCTTTGGTGTCT-CAAGAAAAGC
* * * * **
3543049 TTTTCTTTGCCTTA-TTTTCTTGA-AAATCAAAGTTAATCCCTTAAATAAAACAAGCACCGATTC
65 TTTTCTTT-CC-AACATTT-TTGATAAATCAAAGTT--TCCCTTAAATAAGACAAACATTGATTC
* *
3543112 TCGCAATAGTCTCCATTCCTTTCAAGA-TGGG
125 TCGCAA-AGTCTCCATTCCTTTTAAGATTAGG
* * * * *
3543143 AAGCCA-AAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCACAAGAAAAGC
1 CA-CCATAAACACATTCCCTTCATTAGGATAAATGACATTGATGCTTTGGTGTCTCAAGAAAAGC
* * * *
3543207 TTTTCTTTCCATCATTATTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATT-ACTACT
65 TTTTCTTTCCAACATTTTTGATA-AATCAAAGTTT-CC-CTTAAATAAGACAAACATTGA-TTCT
* ** *
3543271 CATGCAAA-TCCCCATTTTTTTTAGGATTAGG
126 C--GCAAAGTCTCCATTCCTTTTAAGATTAGG
* * * * ** ** * * * *
3543302 CACCATAGACATAAT-CTTCTCATTAGGATAAACCATTTTGATGCTTTTGTTTCGCAAGAAATGC
1 CACCATAAACACATTCCCT-TCATTAGGATAAATGACATTGATGCTTTGGTGTCTCAAGAAAAGC
* * * * * * *
3543366 TTTT-TTCCCACAAATTATTG-TAATGTCTAAGTTTGCGCCTCAAATGAGACAAACATTGATTCT
65 TTTTCTTTCCA-ACATTTTTGATAA-ATCAAAGTTT-C-CCTTAAATAAGACAAACATTGATTCT
* ** * * * **
3543429 AGTGATGATCTTCATTCATTTTGTGATTAGG
126 CGCAAAG-TCTCCATTCCTTTTAAGATTAGG
* * * * * * *
3543460 CACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATG-TTT--T-TTTGGATGGAAATC
1 CACCATAAACACATTCCCTTCATTAGGATAAATGACATTGATGCTTTGGTGTCT-CAAGAAAAGC
* *** * * * *
3543521 TTTTCTTTGCTTTATTTTCTTGA-AAATCAAAGTTCATCCCTTAAATAAGTCAAGCATCGATTCC
65 TTTTCTTTCCAACA-TTT-TTGATAAATCAAAGTT--TCCCTTAAATAAGACAAACATTGATTCT
* * * *
3543585 CACAACAGTCTCCGTTCCTTTCAAGA-TGGG
126 CGCAA-AGTCTCCATTCCTTTTAAGATTAGG
* * * *
3543615 AAGCCA-AAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCTCCAGAAAAGC
1 CA-CCATAAACACATTCCCTTCATTAGGATAAATGACATTGATGCTTTGGTGTCTCAAGAAAAGC
* * * *
3543679 TTTTCTTTTCACCATTTTTGATAGAATCAAAGTTTGCCTCTCATATAAGACAAACAT
65 TTTTCTTTCCAACATTTTTGATA-AATCAAAGTTT-CC-CTTAAATAAGACAAACAT
3543736 GAATACTCAA
Statistics
Matches: 1107, Mismatches: 318, Indels: 216
0.67 0.19 0.13
Matches are distributed among these distances:
150 3 0.00
151 9 0.01
152 39 0.04
153 27 0.02
154 60 0.05
155 89 0.08
156 139 0.13
157 86 0.08
158 455 0.41
159 177 0.16
160 19 0.02
161 4 0.00
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.36
Consensus pattern (155 bp):
CACCATAAACACATTCCCTTCATTAGGATAAATGACATTGATGCTTTGGTGTCTCAAGAAAAGCT
TTTCTTTCCAACATTTTTGATAAATCAAAGTTTCCCTTAAATAAGACAAACATTGATTCTCGCAA
AGTCTCCATTCCTTTTAAGATTAGG
Found at i:3543154 original size:475 final size:474
Alignment explanation
Indices: 3542045--3543878 Score: 2874
Period size: 475 Copynumber: 3.9 Consensus size: 474
3542035 GTTTTCATCA
3542045 CACCACAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGGATGGAAATCT
1 CACCACAAACACATTCCCTTCATTAGGATAAATGATATTGATGA-TTTTTTTTGGATGGAAATCT
* *
3542110 TTTCTTTGCCTTATTTTCCTT-AAAATCAAAGTTCTTCCCTTAAATAAGACACGCATCGATTCTC
65 TTTCTTTGCCTTATTTT-CTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC
* * * *
3542174 ATAATAGTCTCCACTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAGAATACATGGC
129 ACAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGC
*
3542239 ATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGC
194 ATTGATACTTTGGTGTCTCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGC
3542304 CTCTTATATAAG--AAACATTACTACTCATGCAAATCCCCA-TTTTTTTAGGATTAGGCACCATA
259 CTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTTTTTAGGATTAGGCACCATA
* * *
3542366 GACATAATCTTCTCATTAGGATAAACCATATTGATGCTCTTGTTTCGCAAGAAAAGCCTTTTT-C
324 GACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAATGCTTTTTTCC
* * *
3542430 CA-AAATTATTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAAACATTAATTCTAGTGATGATA
389 CACAAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAACATTGATTCTAGTGATGATC
*
3542494 TTCATTCATTTTG-CA--A-G
454 TTCATTCATTTTGTGATTAGG
* * *
3542511 CACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTGGATGAAAATCTT
1 CACCACAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTGGATGGAAATCTT
* *
3542576 TTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATTGATTCTCGC
66 TTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCAC
**
3542641 AACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAGGGCACATGGCAT
131 AACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCAT
* * * *
3542706 TGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTTTCAACATTTTTGATAGAATCAAAGTTTGTCT
196 TGATACTTTGGTGTCTCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCT
3542771 CTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTTTTTAGGATTAGGCACCATAGA
261 CTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTTTTTAGGATTAGGCACCATAGA
* * *
3542836 CATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTCCGCAAGACATGCTTTTTTCCTA
326 CATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAATGCTTTTTTCCCA
*
3542901 CAAATTATTGTAATGTCTAAGTTTGCGCCTCAAATGAGACAAACATTGATTCTAGTGATGATCTT
391 CAAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAACATTGATTCTAGTGATGATCTT
3542966 CATTCATTTTGTGATTAGG
456 CATTCATTTTGTGATTAGG
3542985 CACCACAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGGATGGAAATCT
1 CACCACAAACACATTCCCTTCATTAGGATAAATGATATTGATGA-TTTTTTTTGGATGGAAATCT
* * * *
3543050 TTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTAATCCCTTAAATAAAACAAGCACCGATTCTCG
65 TTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCA
*
3543115 CAATAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCA
130 CAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCA
* * *
3543180 TTGATACTTTGGTGTCACAAGAAAAGCTTTTCTTTCCATCATTATTGATAGAATCAAAGTTTGCC
195 TTGATACTTTGGTGTCTCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCC
3543245 TCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTTTTTAGGATTAGGCACCATAG
260 TCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTTTTTAGGATTAGGCACCATAG
*
3543310 ACATAATCTTCTCATTAGGATAAACCATTTTGATGCTTTTGTTTCGCAAGAAATGCTTTTTTCCC
325 ACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAATGCTTTTTTCCC
*
3543375 ACAAATTATTGTAATGTCTAAGTTTGCGCCTCAAATGAGACAAACATTGATTCTAGTGATGATCT
390 ACAAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAACATTGATTCTAGTGATGATCT
3543440 TCATTCATTTTGTGATTAGG
455 TCATTCATTTTGTGATTAGG
* *
3543460 CACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATG--TTTTTTTGGATGGAAATCTT
1 CACCACAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTGGATGGAAATCTT
* * *
3543523 TTCTTTGCTTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAATAAGTCAAGCATCGATTCCCAC
66 TTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCAC
*
3543588 AACAGTCTCCGTTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCAT
131 AACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCAT
* * *
3543653 TGATGCTTTGGTGTCTCCAGAAAAGCTTTTCTTTTCACCATTTTTGATAGAATCAAAGTTTGCCT
196 TGATACTTTGGTGTCTCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCT
* * * *** *
3543718 CTCATATAAGACAAACATGAATACTCAAATAAATCCCCATTCTTTTCTT--GATTAGGCATCATA
261 CTTATATAAGACAAACATTACTACTCATGCAAATCCCCATT-TTTT-TTAGGATTAGGCACCATA
* ** * * * * ***
3543781 AACATAGCCTTCTGATTAGGATAGACGATATTGACG-TTTTAGTTAT-GCAAG-AATGGGATTTT
324 GACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTT-GTT-TCGCAAGAAATGCTTTTTT
* * *
3543843 CCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCA
387 CCCACAAATTATTGTAAAGTCTAAGTTTGCGCCTCA
3543879 TTCATTTTGT
Statistics
Matches: 1265, Mismatches: 88, Indels: 25
0.92 0.06 0.02
Matches are distributed among these distances:
464 3 0.00
465 206 0.16
466 42 0.03
467 27 0.02
468 81 0.06
469 2 0.00
470 71 0.06
471 45 0.04
472 284 0.22
473 6 0.00
474 45 0.04
475 453 0.36
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.36
Consensus pattern (474 bp):
CACCACAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTGGATGGAAATCTT
TTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCAC
AACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCAT
TGATACTTTGGTGTCTCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCT
CTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTTTTTAGGATTAGGCACCATAGA
CATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAATGCTTTTTTCCCA
CAAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAACATTGATTCTAGTGATGATCTT
CATTCATTTTGTGATTAGG
Found at i:3545887 original size:471 final size:471
Alignment explanation
Indices: 3543876--3551602 Score: 11731
Period size: 471 Copynumber: 16.3 Consensus size: 471
3543866 AGTTTGTGCC
** *
3543876 TCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC-TCCTTAGGATAAATGGTATTGATGA
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCTTAATTAGGATAAATGATATTGATGA
* * * * *
3543940 TTTTCTTTTACATAGAAATCTTTTCTTTGCCCTATTTTCCTT-AAAATCAAAGTTCTTCCCTTAA
65 TTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTT-CTTGAAAATCAAAGTTCATCCCTTAA
* * * *
3544004 ATAAGACACGCATCGATTCTCATAATAGTCTCCACTCCTTTCAAGATGGGAAGCCAAAACACATT
129 ATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATT
*
3544069 CCCTTCATTAGAATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATT
194 CCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATT
3544134 TTTGATAGAATCAAAGTTTGCCTCTTATATAAG--AAACATTACTACTCATGCAAATCCCCATTT
259 TTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTT
3544197 TTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTT
324 TTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGC---TGTTT
* *
3544262 CGCAAGAAGGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACGAA
386 CGCAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAA
*
3544327 CATTGATTCTAGTGATGATCT
451 CATTAATTCTAGTGATGATCT
*
3544348 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTAATTAGGATAAATGATATTGATGA-
* *
3544413 TTTTTTTTTGCATGGAACTCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCTCTTAAA
65 TTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAA
* * *
3544478 TAAGACAAGCACCAATTCTCATAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACATT
130 TAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACACATT
* * * * * *
3544543 CTCTTCATTAGGATACATGGCATTGATGCTTTGGGGTCGCAAAAAAAGCTTTTCTTTCCTCCGTT
194 CCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATT
* * ** * * * * *
3544608 TTTGATATAATCAAATTTTATCTCTTATATAAGACAAACATGAATACACATACAAATCCCAATTC
259 TTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATT-
* * * ****
3544673 TTTTCT-TGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACGTTATATTGATGCTTTGGA
323 TTTT-TAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGC--T-G-
* * * * * *
3544737 TTT-GCAAGAAATGCTTTTTTCCCGCCAATTTTTGTAAGGTCTAAATTT-CTGCCTCAAATGAGG
383 TTTCGCAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTGC-GCCTCAAATGAGA
** *
3544800 CAAACATGGATTCTAGTGATGAACT
447 CAAACATTAATTCTAGTGATGATCT
* * * *
3544825 TGATTCATTTTGTGATTAAGCACTAGAAAGACATTCTCCTT-ATTAGGATAAATGATATTGATGA
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCTTAATTAGGATAAATGATATTGATGA
* * * *
3544889 TTTTTTTTTTTGCATGGAAATCTTATCTTTGCCCTATTTTCCTT-AAAATCAAAATTCATTCCTT
65 --TTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTT-CTTGAAAATCAAAGTTCATCCCTT
* * * *
3544953 AAATAAGACAGGCATTGATTCTCGTAATAGTCTCCATTTCTTTCAAGATTGGGAAGCCAAAACAC
127 AAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACAC
* * * * * * * *
3545018 AGTCCCTTCATTAGGATATATGGCATTGATGCTTTGGTGTCGCAGGAAAAGCGTTCCTTTCTATC
191 ATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACC
* * * **
3545083 ATTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATGAATGCTCATAAAAATCCCCA
256 ATTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCA
* ** * * * * **
3545148 TTCTTTCTT--GATTAGGCACCATAAACATAGCCTTCTGATTAGAATAGACGATATTGACGTTTT
321 TT-TTT-TTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGA--TGCT
** * *
3545211 AGTTAT-GCAAGAAAGG-GATTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGA
382 -GTT-TCGCAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGA
*
3545274 GACAATCA-TAGATTCTAGTGATGATCT
445 GACAAACATTA-ATTCTAGTGATGATCT
* *
3545301 TCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCT--TTAGGATAAATGGTATTTATG
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCT-TAATTAGGATAAATGATATTGATG
* * * * * * *
3545364 ATTTTCTTTTACATGGAAAACTTTTCTTTGCCCTATTTTCCAT-AAGATCAAAGTTCTTCCCTTA
64 ATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTT-CTTGAAAATCAAAGTTCATCCCTTA
* * *
3545428 AATAAGACACGCATCGATTCTCATAATAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACAT
128 AATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACAT
3545493 TCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCAT
193 TCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCAT
3545558 TTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATT
258 TTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATT
3545623 TTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTGTTTCG
323 TTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTGTTTCG
* *
3545688 CAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGGTTGCGCCTCAAATGAGACAAATA
388 CAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAACA
3545753 TTAATTCTAGTGATGATCT
453 TTAATTCTAGTGATGATCT
* * *
3545772 TCTTTCATTTTGTGATTACGCACTATAATCACATTCCCTTAATTAGGATAAATGATATTGATGAT
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTAATTAGGATAAATGATATTGATGAT
3545837 TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
66 TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
* * *
3545902 AAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCATTCAAGATGGGAAGCCAAAACACAATCC
131 AAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
3545967 CTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
196 CTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
*
3546032 TGATAGAATCAAAGTTTGCTTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
261 TGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCA-TTTT
3546097 TTTAGGA-TAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTC
325 TTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGC---TGTTTC
* *
3546161 GCAAGAAAGGCTTTTTTCCCACCAGTTATTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAAAC
387 GCAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAAC
* *
3546226 GTTGATTCTAGTGATGATCT
452 ATTAATTCTAGTGATGATCT
*
3546246 TCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCT--TTAGGATAAATGGTATTGATG
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCT-TAATTAGGATAAATGATATTGATG
* * * * * * * *
3546309 ATTTTCTTTTACATGGAAAACTTTTCTTAGCCCTATTTTCCAT-AAGATCAAAGTTCTTCCCTTA
64 ATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTT-CTTGAAAATCAAAGTTCATCCCTTA
* * *
3546373 AATAAGACATGCATCGATTCTCATAATAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACAT
128 AATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACAT
3546438 TCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCAT
193 TCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCAT
3546503 TTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATT
258 TTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATT
*
3546568 TTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTGTTTCA
323 TTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTGTTTCG
* *
3546633 CAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGGTTGCGCCTCAAATGAGACAAATA
388 CAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAACA
3546698 TTAATTCTAGTGATGATCT
453 TTAATTCTAGTGATGATCT
* * * *
3546717 TCTTTCATTTTGTGATTACGCACTATAATCACTTTCCCTTAATTAGGATAAATGATATTGATGAT
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTAATTAGGATAAATGATATTGATGAT
3546782 TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
66 TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
* *
3546847 AAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACAATCC
131 AAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
*
3546912 CTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAACTTTTCTTTCCACCATTTT
196 CTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
*
3546977 TGATAGAATCAAAGTTTGCTTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
261 TGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCA-TTTT
*
3547042 TTTAGGA-TAGGCACAATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTC
325 TTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGC---TGTTTC
* * *
3547106 CCAAGAAAGGCTTTTTTCCCACCAGTTATTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAAAC
387 GCAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAAC
* *
3547171 GTTGATTCTAGTGATGATCT
452 ATTAATTCTAGTGATGATCT
*
3547191 TCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCT--TTAGGATAAATGGTATTGATG
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCT-TAATTAGGATAAATGATATTGATG
* * * * * * *
3547254 ATTTTCTTTTACATGGAAAACTTTTCTTTGCCCTATTTTCCAT-AAGATCAAAGTTCTTCCCTTA
64 ATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTT-CTTGAAAATCAAAGTTCATCCCTTA
* * * *
3547318 AATAAGACACGTATCGATTCTCATAATAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACAT
128 AATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACAT
3547383 TCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCAT
193 TCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCAT
3547448 TTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATT
258 TTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATT
3547513 TTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTGTTTCG
323 TTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTGTTTCG
* *
3547578 CAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGGTTGCGCCTCAAATGAGACAAATA
388 CAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAACA
3547643 TTAATTCTAGTGATGATCT
453 TTAATTCTAGTGATGATCT
* * * *
3547662 TCTTTCATTTTGTGATTACGCACTATAATCACTTTCCCTTAATTAGGATAAATGATATTGATGAT
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTAATTAGGATAAATGATATTGATGAT
3547727 TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
66 TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
* *
3547792 AAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACAATCC
131 AAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
*
3547857 CTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAACTTTTCTTTCCACCATTTT
196 CTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
*
3547922 TGATAGAATCAAAGTTTGCTTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
261 TGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
3547987 TTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTGTTTCGCAA
326 TTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTGTTTCGCAA
* * *
3548052 GAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGGTTGCGCCTCAAATGAGATAAATATTA
391 GAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAACATTA
3548117 ATTCTAGTGATGATCT
456 ATTCTAGTGATGATCT
* * *
3548133 TCTTTCATTTTGTGATTACGCACTATAATCACATTCCCTTAATTAGGATAAATGATATTGATGAT
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTAATTAGGATAAATGATATTGATGAT
3548198 TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
66 TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
* *
3548263 AAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACAATCC
131 AAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
3548328 CTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
196 CTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
*
3548393 TGATAGAATCAAAGTTTGCTTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
261 TGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
3548458 TTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTGTTTCGCAA
326 TTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTGTTTCGCAA
* *
3548523 GAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGGTTGCGCCTCAAATGAGACAAATATTA
391 GAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAACATTA
3548588 ATTCTAGTGATGATCT
456 ATTCTAGTGATGATCT
* * * *
3548604 TCTTTCATTTTGTGATTACGCACTATAATCACTTTCCCTTAATTAGGATAAATGATATTGATGAT
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTAATTAGGATAAATGATATTGATGAT
3548669 TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
66 TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
* *
3548734 AAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACAATCC
131 AAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
*
3548799 CTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAACTTTTCTTTCCACCATTTT
196 CTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
*
3548864 TGATAGAATCAAAGTTTGCTTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
261 TGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
3548929 TTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTGTTTCGCAA
326 TTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTGTTTCGCAA
* * *
3548994 GAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGGTTGCGCCTCAAATGAGATAAATATTA
391 GAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAACATTA
3549059 ATTCTAGTGATGATCT
456 ATTCTAGTGATGATCT
* * *
3549075 TCTTTCATTTTGTGATTACGCACTATAATCACATTCCCTTAATTAGGATAAATGATATTGATGAT
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTAATTAGGATAAATGATATTGATGAT
3549140 TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
66 TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
* *
3549205 AAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACAATCC
131 AAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
3549270 CTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
196 CTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
*
3549335 TGATAGAATCAAAGTTTGCTTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
261 TGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCA-TTTT
3549400 TTTAGGA-TAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTC
325 TTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGC---TGTTTC
* *
3549464 GCAAGAAAGGCTTTTTTCCCACCAGTTATTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAAAC
387 GCAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAAC
* *
3549529 GTTGATTCTAGTGATGATCT
452 ATTAATTCTAGTGATGATCT
* *
3549549 TCACTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTAATTAGGATAAATGATATTGATGAT
*
3549614 TTTTTTTTGCATGGAAATGTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
66 TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
*
3549679 AAGACAAGCATCAATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACATTC
131 AAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACACATTC
* * * * * *
3549744 TCTTCTTTAGGATACATGGCATTGATGCTTTGGTGTCGCAAAAAAAGCTTTTCTTTCCTCCGTTT
195 CCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTT
*
3549809 TTGATGGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTT
260 TTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTT
3549874 TTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTGTTTCGCA
325 TTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTGTTTCGCA
* *
3549939 AGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGGTTGCGCCTCAAATGAGACAAATATT
390 AGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAACATT
3550004 AATTCTAGTGATGATCT
455 AATTCTAGTGATGATCT
* * *
3550021 TCTTTCATTTTGTGATTACGCACTATAATCACATTCCCTTAATTAGGATAAATGATATTGATGAT
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTAATTAGGATAAATGATATTGATGAT
3550086 TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
66 TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
* *
3550151 AAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACAATCC
131 AAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
3550216 CTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
196 CTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
*
3550281 TGATAGAATCAAAGTTTGCTTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
261 TGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCA-TTTT
3550346 TTTAGGA-TAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTC
325 TTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGC---TGTTTC
* *
3550410 GCAAGAAAGGCTTTTTTCCCACCAGTTATTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAAAC
387 GCAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAAC
* *
3550475 GTTGATTCTAGTGATGATCT
452 ATTAATTCTAGTGATGATCT
*
3550495 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTAATTAGGATAAATGATATTGATGAT
*
3550560 TTTTTTTTGCATGGAAATGTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
66 TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
*
3550625 AAGACAAGCATCAATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACATTC
131 AAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACACATTC
* * * * * *
3550690 TCTTCTTTAGGATACATGGCATTGATGCTTTGGTGTCGCAAAAAAAGCTTTTCTTTCCTCCGTTT
195 CCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTT
* * * * * * * *
3550755 TTGATGGAATCAAAGTTTGTCTCTTATTTAAGACAAACATGAATACGT-GTACAAATCACCATTC
260 TTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTAC-TCATGCAAATCCCCATT-
* * * * ** * *
3550819 TTTTCT-TGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATTATATTGAAGCTTTGGA
323 TTTT-TAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGC--T-GT
* * ** * *
3550883 TTGGCAAGAAATGCTTTTTTCCCACCAAATT-TTGTATGGTGTAAGTTTGTGCCTCAAATGAGGA
384 TTCGCAAGAAAGGCTTTTTTCCCACC-AATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGA-GA
** * *
3550947 -AAACATGGATTCTAGAGATGAACT
447 CAAACATTAATTCTAGTGATGATCT
* * * * *
3550971 TGATTCATTTTGTGATTAAGCACTAGAAAGACATTCTCTTCAA-TAGGATAAATGATATTGATGA
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTT-AATTAGGATAAATGATATTGATGA
* * * * * * * *
3551035 TTTTCTTTTGCCTGAAAATCTTATCTTTTCCCTATTTCCCTT-AAAATCAAAATTCATCCCTTAA
65 TTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTT-TCTTGAAAATCAAAGTTCATCCCTTAA
* * * *
3551099 ATAAGATAGGCATCGATTCTCATAATAGTCTCCATTCCTTTCAAGATTGGGAAGCCAAAACACAT
129 ATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACACAT
* * *
3551164 TCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTCCTTTCCGTCC-
193 TCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC-ACCA
* * * **
3551228 CTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATGAATACTCAAACAAATCCCCAT
257 TTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCAT
* * ** * * * *
3551293 TCTTTTCT-TGATTAGGCACCATAAACATAGCCTTCTGATTAGGATAGACGATATTGATGGTTTA
322 T-TTTT-TAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGAT-G-CT-
* * ** * *
3551357 GTTAT-GCAAGGAAGGC-ATTTTCCTGCCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAG
382 GTT-TCGCAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAG
3551420 ACAAACA-TAGATTCTAGTGATGATCT
446 ACAAACATTA-ATTCTAGTGATGATCT
* * *
3551446 TCAATCATTTTGTGATTAGGCACTATAAACACATTCTCCTCT--TTAGTATAAATGGTATTGATG
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCT-TAATTAGGATAAATGATATTGATG
* * * *
3551509 ATTTTCTTTTACATGGAAATCTTTTCTTTGCCCTATTTTCCTT-AAAATCAAAGTTCTTCCCTTA
64 ATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTT-CTTGAAAATCAAAGTTCATCCCTTA
*
3551573 AATAAGACACA-CATCGATTCTCATAACAGT
128 AATAAGACA-AGCATCGATTCTCGTAACAGT
3551603 TGATGACAAC
Statistics
Matches: 6712, Mismatches: 459, Indels: 165
0.91 0.06 0.02
Matches are distributed among these distances:
469 4 0.00
470 28 0.00
471 2844 0.42
472 362 0.05
473 292 0.04
474 1571 0.23
475 517 0.08
476 607 0.09
477 247 0.04
478 235 0.04
479 5 0.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.36
Consensus pattern (471 bp):
TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTAATTAGGATAAATGATATTGATGAT
TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
AAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCC
CTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
TGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
TTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTGTTTCGCAA
GAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAACATTA
ATTCTAGTGATGATCT
Found at i:3546253 original size:945 final size:944
Alignment explanation
Indices: 3543876--3551594 Score: 11783
Period size: 945 Copynumber: 8.2 Consensus size: 944
3543866 AGTTTGTGCC
* ** *
3543876 TCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC-TCCTTAGGATAAATGGTATTGATGA
1 TCATTCATTTTGTGATTACGCACTATAAACACATTC-CCTTAATTAGGATAAATGATATTGATGA
* * * * *
3543940 TTTTCTTTTACATAGAAATCTTTTCTTTGCCCTATTTTCCTT-AAAATCAAAGTTCTTCCCTTAA
65 TTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTT-CTTGAAAATCAAAGTTCATCCCTTAA
* ** * * *
3544004 ATAAGACACGCATCGATTCTCATAATAGTCTCCACTCCTTTCAAGATGGGAAGCCAAAACACATT
129 ATAAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACAAT
*
3544069 CCCTTCATTAGAATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATT
194 CCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATT
*
3544134 TTTGATAGAATCAAAGTTTGCCTCTTATATAAG--AAACATTACTACTCATGCAAATCCCCATTT
259 TTTGATAGAATCAAAGTTTGCTTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTT
3544197 TTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTT
324 TTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTT
* *
3544262 CGCAAGAAGGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACGAA
389 CGCAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAA
*
3544327 CATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATT
454 CATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCC-TCTTT
* ** *
3544392 AGGATAAATGATATTGATGATTTTTTTTTTGCATGGAACTCTTTTCTTTGCCTTATTTTCTTGAA
518 AGGATAAATGATATTGATGA-TTTTCTTTTGCATGGAAAACTTTTCTTTGCCCTATTTTCTTGAA
* * *
3544457 AATCAAAGTTCATCTCTTAAATAAGACAAGCACCAATTCTCATAACAGTCTCCATTCCTTTCAAG
582 AATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCCTTTCAAG
* * * *
3544522 ACTGGGAAGCCAAAACACATTCTCTTCATTAGGATACATGGCATTGATGCTTTGGGGTCGCAAAA
647 A-TGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGA
* * * * ** * *
3544587 AAAGCTTTTCTTTCCTCCGTTTTTGATATAATCAAATTTTATCTCTTATATAAGACAAACATGAA
711 AAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTAC
* * * * * *
3544652 TACACATACAAATCCCAATTCTTTTCT-TGATTAGGCACCATAAACATAGTCTTCTCATTAGGAT
776 TACTCATGCAAATCCCCATT-TTTT-TAGGATTAGGCACCATAGACATAATCTTCTCATTAGGAT
**** * * * *
3544716 ACGTTATATTGATGCTTTGGATTT-GCAAGAAATGCTTTTTTCCCGCCAATTTTTGTAAGGTCTA
839 AAACCATATTGATGC--T-G-TTTCGCAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTA
* * * ** *
3544780 A-ATTTCTGCCTCAAATGAGGCAAACATGGATTCTAGTGATGAACT
900 AGGTTGC-GCCTCAAATGAGACAAACATTAATTCTAGTGATGATCT
* * * *
3544825 TGATTCATTTTGTGATTAAGCACTAGAAAGACATTCTCCTT-ATTAGGATAAATGATATTGATGA
1 TCATTCATTTTGTGATTACGCACTATAAACACATTC-CCTTAATTAGGATAAATGATATTGATGA
* * * *
3544889 TTTTTTTTTTTGCATGGAAATCTTATCTTTGCCCTATTTTCCTT-AAAATCAAAATTCATTCCTT
65 --TTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTT-CTTGAAAATCAAAGTTCATCCCTT
* * * * *
3544953 AAATAAGACAGGCATTGATTCTCGTAATAGTCTCCATTTCTTTCAAGATTGGGAAGCCAAAACAC
127 AAATAAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACAC
* * * * * * * *
3545018 AGTCCCTTCATTAGGATATATGGCATTGATGCTTTGGTGTCGCAGGAAAAGCGTTCCTTTCTATC
191 AATCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACC
* * * * **
3545083 ATTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATGAATGCTCATAAAAATCCCCA
256 ATTTTTGATAGAATCAAAGTTTGCTTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCA
* ** * * * * *
3545148 TTCTTTCTT--GATTAGGCACCATAAACATAGCCTTCTGATTAGAATAGACGATATTGACG-TTT
321 TT-TTT-TTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTT
** * *
3545210 TAGTTAT-GCAAGAAAGG-GATTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATG
384 T-GTT-TCGCAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATG
* *
3545273 AGACAATCATAGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT
447 AGACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC-
* * *
3545338 CCTCTTTAGGATAAATGGTATTTATGATTTTCTTTTACATGGAAAACTTTTCTTTGCCCTATTTT
511 CCTCTTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAAACTTTTCTTTGCCCTATTTT
* * * * *
3545403 CCAT-AAGATCAAAGTTCTTCCCTTAAATAAGACACGCATCGATTCTCATAATAGTCTCCATTCC
576 -CTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCC
3545467 TTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTC
640 TTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTC
3545532 GCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAA
705 GCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAA
3545597 CATTACTACTCATGCAAATCCCCATTTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTA
770 CATTACTACTCATGCAAATCCCCATTTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTA
3545662 GGATAAACCATATTGATGCTGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTA
835 GGATAAACCATATTGATGCTGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTA
*
3545727 AGGTTGCGCCTCAAATGAGACAAATATTAATTCTAGTGATGATCT
900 AGGTTGCGCCTCAAATGAGACAAACATTAATTCTAGTGATGATCT
* *
3545772 TCTTTCATTTTGTGATTACGCACTATAATCACATTCCCTTAATTAGGATAAATGATATTGATGAT
1 TCATTCATTTTGTGATTACGCACTATAAACACATTCCCTTAATTAGGATAAATGATATTGATGAT
3545837 TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
66 TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
*
3545902 AAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCATTCAAGATGGGAAGCCAAAACACAATCC
131 AAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACAATCC
3545967 CTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
196 CTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
3546032 TGATAGAATCAAAGTTTGCTTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
261 TGATAGAATCAAAGTTTGCTTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCA-TTTT
3546097 TTTAGGA-TAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTC
325 TTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTC
* *
3546161 GCAAGAAAGGCTTTTTTCCCACCAGTTATTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAAAC
390 GCAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAAC
*
3546226 GTTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCTTTA
455 ATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCTCTTTA
* * * * *
3546291 GGATAAATGGTATTGATGATTTTCTTTTACATGGAAAACTTTTCTTAGCCCTATTTTCCAT-AAG
519 GGATAAATGATATTGATGATTTTCTTTTGCATGGAAAACTTTTCTTTGCCCTATTTT-CTTGAAA
* * *
3546355 ATCAAAGTTCTTCCCTTAAATAAGACATGCATCGATTCTCATAATAGTCTCCATTCCTTTCAAGA
583 ATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCCTTTCAAGA
3546420 TGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAA
648 TGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAA
3546485 AGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTA
713 AGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTA
3546550 CTCATGCAAATCCCCATTTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAAC
778 CTCATGCAAATCCCCATTTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAAC
*
3546615 CATATTGATGCTGTTTCACAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGGTTGCG
843 CATATTGATGCTGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGGTTGCG
*
3546680 CCTCAAATGAGACAAATATTAATTCTAGTGATGATCT
908 CCTCAAATGAGACAAACATTAATTCTAGTGATGATCT
* * *
3546717 TCTTTCATTTTGTGATTACGCACTATAATCACTTTCCCTTAATTAGGATAAATGATATTGATGAT
1 TCATTCATTTTGTGATTACGCACTATAAACACATTCCCTTAATTAGGATAAATGATATTGATGAT
3546782 TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
66 TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
3546847 AAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACAATCC
131 AAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACAATCC
*
3546912 CTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAACTTTTCTTTCCACCATTTT
196 CTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
3546977 TGATAGAATCAAAGTTTGCTTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
261 TGATAGAATCAAAGTTTGCTTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCA-TTTT
*
3547042 TTTAGGA-TAGGCACAATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTC
325 TTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTC
* * *
3547106 CCAAGAAAGGCTTTTTTCCCACCAGTTATTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAAAC
390 GCAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAAC
*
3547171 GTTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCTTTA
455 ATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCTCTTTA
* * * *
3547236 GGATAAATGGTATTGATGATTTTCTTTTACATGGAAAACTTTTCTTTGCCCTATTTTCCAT-AAG
519 GGATAAATGATATTGATGATTTTCTTTTGCATGGAAAACTTTTCTTTGCCCTATTTT-CTTGAAA
* * * *
3547300 ATCAAAGTTCTTCCCTTAAATAAGACACGTATCGATTCTCATAATAGTCTCCATTCCTTTCAAGA
583 ATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCCTTTCAAGA
3547365 TGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAA
648 TGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAA
3547430 AGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTA
713 AGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTA
3547495 CTCATGCAAATCCCCATTTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAAC
778 CTCATGCAAATCCCCATTTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAAC
3547560 CATATTGATGCTGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGGTTGCG
843 CATATTGATGCTGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGGTTGCG
*
3547625 CCTCAAATGAGACAAATATTAATTCTAGTGATGATCT
908 CCTCAAATGAGACAAACATTAATTCTAGTGATGATCT
* * *
3547662 TCTTTCATTTTGTGATTACGCACTATAATCACTTTCCCTTAATTAGGATAAATGATATTGATGAT
1 TCATTCATTTTGTGATTACGCACTATAAACACATTCCCTTAATTAGGATAAATGATATTGATGAT
3547727 TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
66 TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
3547792 AAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACAATCC
131 AAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACAATCC
*
3547857 CTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAACTTTTCTTTCCACCATTTT
196 CTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
3547922 TGATAGAATCAAAGTTTGCTTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
261 TGATAGAATCAAAGTTTGCTTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
3547987 TTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGC---TGTTTCG
326 TTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCG
* * *
3548049 CAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGGTTGCGCCTCAAATGAGATAAATA
391 CAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAACA
* * * *
3548114 TTAATTCTAGTGATGATCTTCTTTCATTTTGTGATTACGCACTATAATCACATTCCCT-TAATTA
456 TTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTCT--TTA
* * *
3548178 GGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAA
519 GGATAAATGATATTGATGATTTTCTTTTGCATGGAAAACTTTTCTTTGCCCTATTTTCTTGAAAA
**
3548243 TCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGAT
584 TCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCCTTTCAAGAT
*
3548308 GGGAAGCCAAAACACAATCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAA
649 GGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAA
*
3548373 GCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCTTCTTATATAAGACAAACATTACTAC
714 GCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTAC
3548438 TCATGCAAATCCCCATTTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACC
779 TCATGCAAATCCCCATTTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACC
3548503 ATATTGATGCTGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGGTTGCGC
844 ATATTGATGCTGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGGTTGCGC
*
3548568 CTCAAATGAGACAAATATTAATTCTAGTGATGATCT
909 CTCAAATGAGACAAACATTAATTCTAGTGATGATCT
* * *
3548604 TCTTTCATTTTGTGATTACGCACTATAATCACTTTCCCTTAATTAGGATAAATGATATTGATGAT
1 TCATTCATTTTGTGATTACGCACTATAAACACATTCCCTTAATTAGGATAAATGATATTGATGAT
3548669 TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
66 TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
3548734 AAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACAATCC
131 AAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACAATCC
*
3548799 CTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAACTTTTCTTTCCACCATTTT
196 CTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
3548864 TGATAGAATCAAAGTTTGCTTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
261 TGATAGAATCAAAGTTTGCTTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
3548929 TTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGC---TGTTTCG
326 TTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCG
* * *
3548991 CAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGGTTGCGCCTCAAATGAGATAAATA
391 CAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAACA
* * * *
3549056 TTAATTCTAGTGATGATCTTCTTTCATTTTGTGATTACGCACTATAATCACATTCCCT-TAATTA
456 TTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTCT--TTA
* * *
3549120 GGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAA
519 GGATAAATGATATTGATGATTTTCTTTTGCATGGAAAACTTTTCTTTGCCCTATTTTCTTGAAAA
**
3549185 TCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGAT
584 TCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCCTTTCAAGAT
*
3549250 GGGAAGCCAAAACACAATCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAA
649 GGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAA
*
3549315 GCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCTTCTTATATAAGACAAACATTACTAC
714 GCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTAC
3549380 TCATGCAAATCCCCATTTTTTTTAGGA-TAGGCACCATAGACATAATCTTCTCATTAGGATAAAC
779 TCATGCAAATCCCCA-TTTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAAC
* *
3549444 CATATTGATGCTTTTGTTTCGCAAGAAAGGCTTTTTTCCCACCAGTTATTGTAAAGTCTAAGTTT
843 CATATTGATGC---TGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGGTT
* * *
3549509 GCACCTCAAATGAGACAAACGTTGATTCTAGTGATGATCT
905 GCGCCTCAAATGAGACAAACATTAATTCTAGTGATGATCT
* * *
3549549 TCACTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
1 TCATTCATTTTGTGATTACGCACTATAAACACATTCCCTTAATTAGGATAAATGATATTGATGAT
*
3549614 TTTTTTTTGCATGGAAATGTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
66 TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
* * *
3549679 AAGACAAGCATCAATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACATTC
131 AAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACACAATC
* * * * * *
3549744 TCTTCTTTAGGATACATGGCATTGATGCTTTGGTGTCGCAAAAAAAGCTTTTCTTTCCTCCGTTT
195 CCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTT
* *
3549809 TTGATGGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTT
260 TTGATAGAATCAAAGTTTGCTTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTT
3549874 TTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGC---TGTTTC
325 TTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTC
* *
3549936 GCAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGGTTGCGCCTCAAATGAGACAAAT
390 GCAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAAC
* * * *
3550001 ATTAATTCTAGTGATGATCTTCTTTCATTTTGTGATTACGCACTATAATCACATTCCCT-TAATT
455 ATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTCT--TT
* * *
3550065 AGGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAA
518 AGGATAAATGATATTGATGATTTTCTTTTGCATGGAAAACTTTTCTTTGCCCTATTTTCTTGAAA
**
3550130 ATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGA
583 ATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCCTTTCAAGA
*
3550195 TGGGAAGCCAAAACACAATCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAA
648 TGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAA
*
3550260 AGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCTTCTTATATAAGACAAACATTACTA
713 AGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTA
3550325 CTCATGCAAATCCCCATTTTTTTTAGGA-TAGGCACCATAGACATAATCTTCTCATTAGGATAAA
778 CTCATGCAAATCCCCA-TTTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAA
* *
3550389 CCATATTGATGCTTTTGTTTCGCAAGAAAGGCTTTTTTCCCACCAGTTATTGTAAAGTCTAAGTT
842 CCATATTGATGC---TGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGGT
* * *
3550454 TGCACCTCAAATGAGACAAACGTTGATTCTAGTGATGATCT
904 TGCGCCTCAAATGAGACAAACATTAATTCTAGTGATGATCT
* *
3550495 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
1 TCATTCATTTTGTGATTACGCACTATAAACACATTCCCTTAATTAGGATAAATGATATTGATGAT
*
3550560 TTTTTTTTGCATGGAAATGTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
66 TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
* * *
3550625 AAGACAAGCATCAATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACATTC
131 AAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACACAATC
* * * * * *
3550690 TCTTCTTTAGGATACATGGCATTGATGCTTTGGTGTCGCAAAAAAAGCTTTTCTTTCCTCCGTTT
195 CCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTT
* * * * * * *
3550755 TTGATGGAATCAAAGTTTG-TCTCTTATTTAAGACAAACATGAATACGT-GTACAAATCACCATT
260 TTGATAGAATCAAAGTTTGCT-TCTTATATAAGACAAACATTACTAC-TCATGCAAATCCCCATT
* * * * ** * *
3550818 CTTTTCT-TGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATTATATTGAAGCTTTGG
323 -TTTT-TAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTG
* * * ** * *
3550882 ATTGGCAAGAAATGCTTTTTTCCCACCAAATT-TTGTATGGTGTAAGTTTGTGCCTCAAATGAGG
386 TTTCGCAAGAAAGGCTTTTTTCCCACC-AATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGA-G
* * * * * * * *
3550946 A-AAACATGGATTCTAGAGATGAACTTGATTCATTTTGTGATTAAGCACTAGAAAGACATTCTCT
449 ACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC-CC
** * * * *
3551010 TCAATAGGATAAATGATATTGATGATTTTCTTTTGCCT-GAAAATCTTATCTTTTCCCTATTTCC
513 TCTTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAAA-CTTTTCTTTGCCCTATTT-T
* * * *
3551074 CTT-AAAATCAAAATTCATCCCTTAAATAAGATAGGCATCGATTCTCATAATAGTCTCCATTCCT
576 CTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCCT
*
3551138 TTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTC
641 TTCAAGA-TGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTC
* * *
3551203 GCAAGAAAAGCTTTCCTTTCCGTCC-CTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAA
705 GCAAGAAAAGCTTTTCTTTCC-ACCATTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAA
* * ** * * ** *
3551267 ACATGAATACTCAAACAAATCCCCATTCTTTTCT-TGATTAGGCACCATAAACATAGCCTTCTGA
769 ACATTACTACTCATGCAAATCCCCATT-TTTT-TAGGATTAGGCACCATAGACATAATCTTCTCA
* * * * * ** *
3551331 TTAGGATAGACGATATTGATGGTTTAGTTAT-GCAAGGAAGGC-ATTTTCCTGCCAATTTTTGTA
832 TTAGGATAAACCATATTGAT-G-CT-GTT-TCGCAAGAAAGGCTTTTTTCCCACCAATTATTGTA
* *
3551394 AAGTCTAAGTTTGTGCCTCAAATGAGACAAACA-TAGATTCTAGTGATGATCT
893 AAGTCTAAGGTTGCGCCTCAAATGAGACAAACATTA-ATTCTAGTGATGATCT
* * * *
3551446 TCAATCATTTTGTGATTAGGCACTATAAACACATTCTCCTCT--TTAGTATAAATGGTATTGATG
1 TCATTCATTTTGTGATTACGCACTATAAACACATTC-CCT-TAATTAGGATAAATGATATTGATG
* * * *
3551509 ATTTTCTTTTACATGGAAATCTTTTCTTTGCCCTATTTTCCTT-AAAATCAAAGTTCTTCCCTTA
64 ATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTT-CTTGAAAATCAAAGTTCATCCCTTA
3551573 AATAAGACACA-CATCGATTCTC
128 AATAAGACA-AGCATCGATTCTC
3551595 ATAACAGTTG
Statistics
Matches: 6413, Mismatches: 298, Indels: 116
0.94 0.04 0.02
Matches are distributed among these distances:
940 1 0.00
941 5 0.00
942 1366 0.21
943 14 0.00
944 201 0.03
945 2189 0.34
946 1079 0.17
947 174 0.03
948 5 0.00
949 61 0.01
950 261 0.04
951 572 0.09
952 265 0.04
953 134 0.02
954 80 0.01
955 4 0.00
956 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.36
Consensus pattern (944 bp):
TCATTCATTTTGTGATTACGCACTATAAACACATTCCCTTAATTAGGATAAATGATATTGATGAT
TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAAT
AAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACAATCC
CTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
TGATAGAATCAAAGTTTGCTTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTTT
TTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCG
CAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAACA
TTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTCTTTAGG
ATAAATGATATTGATGATTTTCTTTTGCATGGAAAACTTTTCTTTGCCCTATTTTCTTGAAAATC
AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCCTTTCAAGATGG
GAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGC
TTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTC
ATGCAAATCCCCATTTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCAT
ATTGATGCTGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGGTTGCGCCT
CAAATGAGACAAACATTAATTCTAGTGATGATCT
Found at i:3551319 original size:159 final size:156
Alignment explanation
Indices: 3543877--3551319 Score: 2184
Period size: 158 Copynumber: 47.2 Consensus size: 156
3543867 GTTTGTGCCT
* * * * *
3543877 CATTCATTTTGTGATTAGGCACTATAAACACATTCTCC-TCCTTAGGATAAATGGTATTGATGAT
1 CATTC-TTTTTTGATTAGGCACCATAAACACATTC-CCTTCATTAGGATAAATGATATTGATGCT
** ** * * * *
3543941 TTTCTTTTACATAG-AAATCTTTTCTTTGCC-CTATTTTCCTTA-AAATCAAAGTTCTTCCCTTA
64 TTGGTTTCGCA-AGAAAAGCTTTTCTTT-CCTCCATTTT--TGATAAATCAAAGTT-TGCCCTTA
** * *
3544003 AATAAGACACGCATCG-ATTCTCATAA-TAGTCTC
124 AATAAGACAAACAT-GAATTCTCA-AACAAATCTC
* *** * * * * ** *
3544036 CACTCCTTTCAAGA-TGGGAAGCCA-AAACACATTCCCTTCATTAGAATACATGGCATTGATACT
1 CA-TTCTTTTTTGATTAGGCA-CCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCT
* * *
3544099 TTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTATAT
64 TTGGTTTCGCAAGAAAAGCTTTTCTTTCCTCCATTTTTGATA-AATCAAAGTTTGCC-CTTAAAT
* * * ** *
3544164 AAG--AAACATTACTACTCATGCAAATCCC
127 AAGACAAACATGAATTCTCAAACAAATCTC
* * * * * **
3544192 CATT-TTTTTAGGATTAGGCACCATAGACATAAT-CTTCTCATTAGGATAAACCATATTGATGCT
1 CATTCTTTTT-TGATTAGGCACCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATGCT
* ** * * * * *
3544255 TTTGTTTCGCAAGAAGGGCTTTT-TTCCCACCAATTATTG-TAAAGTCTAAGTTTGCGCCTCAAA
64 TTGGTTTCGCAAGAAAAGCTTTTCTTTCCTCC-ATTTTTGATAAA-TCAAAGTTTGC-CCTTAAA
* * *** * *
3544318 TGAGACGAACATTG-ATTCT-AGTGATGATCTT
126 TAAGACAAACA-TGAATTCTCAAACA-AATCTC
* * *
3544349 CATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGATT
1 CATTC-TTTTTTGATTAGGCACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATG-CT
** * * * ** * *
3544414 TTTTTTTTGCATGGAACTCTTTTCTTTGCCT-TATTTTCTTGA-AAATCAAAGTTCAT-CTCTTA
64 TTGGTTTCGCAAGAAAAGCTTTTCTTT-CCTCCA-TTT-TTGATAAATCAAAGTT--TGCCCTTA
* ** *
3544476 AATAAGACAAGCACCAATTCTCATAAC-AGTCTC
124 AATAAGACAAACATGAATTCTCA-AACAAATCTC
*** * * * * * **
3544509 CATTCCTTTCAAGACTGGGAAGCCA-AAACACATTCTCTTCATTAGGATACATGGCATTGATGCT
1 CATT-CTTTTTTGATTAGGCA-CCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCT
** * * * * * *
3544573 TTGGGGTCGCAAAAAAAGCTTTTCTTTCCTCCGTTTTTGATATAATCAAATTTTATCTCTTATAT
64 TTGGTTTCGCAAGAAAAGCTTTTCTTTCCTCCATTTTTGATA-AATCAAAGTTT-GCCCTTAAAT
* * *
3544638 AAGACAAACATGAATACACATACAAATC-C
127 AAGACAAACATGAATTCTCAAACAAATCTC
* * * ** *
3544667 CAATTCTTTTCTTGATTAGGCACCATAAACATAGT-CTTCTCATTAGGATACGTTATATTGATGC
1 C-ATTCTTTT-TTGATTAGGCACCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATGC
* * * * * *
3544731 TTTGGATTT-GCAAGAAATGCTTTT-TTCCCGCCAATTTTTG-TAAGGTCTAAATTTCTG-CCTC
63 TTTGG-TTTCGCAAGAAAAGCTTTTCTTTCCTCC-ATTTTTGATAA-ATC-AAAGTT-TGCCCTT
* * * * ** *
3544792 AAATGAGGCAAACATGGATTCT-AGTGATGAA-CTT
123 AAATAAGACAAACATGAATTCTCA--AACAAATCTC
* * * * * *
3544826 GATTCATTTTGTGATTAAGCACTAGAAAGACATTCTCCTT-ATTAGGATAAATGATATTGATGAT
1 CATTC-TTTTTTGATTAGGCACCATAAACACATTC-CCTTCATTAGGATAAATGATATTGATG--
* ** * * * * * * * * *
3544890 TTTTTTTTTTGCATGGAAATCTTATCTTTGCC-CTATTTTCCTTA-AAATCAAAATTCAT-TCCT
62 CTTTGGTTTCGCAAGAAAAGCTTTTCTTT-CCTCCATTTT--TGATAAATCAAAGTT--TGCCCT
** * * *
3544952 TAAATAAGACAGGCATTG-ATTCTCGTAA-TAGTCTC
122 TAAATAAGACAAACA-TGAATTCTC-AAACAAATCTC
*** * * * * **
3544987 CATTTCTTTCAAGATTGGGAAGCCA-AAACACAGTCCCTTCATTAGGATATATGGCATTGATGCT
1 CA-TTCTTTTTTGATTAGGCA-CCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCT
* * * * * *
3545051 TTGGTGTCGCAGGAAAAGCGTTCCTTT-CTATCATTTTTGATAGAATCAAAGTTTGCCTCTTATA
64 TTGGTTTCGCAAGAAAAGCTTTTCTTTCCT-CCATTTTTGATA-AATCAAAGTTTGCC-CTTAAA
* *
3545115 TAAGACAAACATGAATGCTCATAA-AAATCCC
126 TAAGACAAACATGAATTCTCA-AACAAATCTC
* ** * * * * *
3545146 CATTCTTTCTTGATTAGGCACCAT-AA-ACATAGCCTTCTGATTAGAATAGACGATATTGACGTT
1 CATTCTTTTTTGATTAGGCACCATAAACACATTCCCTTC--ATTAGGATAAATGATATTGATGCT
* * * * * * *
3545209 TTAGTTAT-GCAAGAAAGGGATTTTC---CCACCAATTTTTG-TAAAGTCTAAGTTTGTGCCTCA
64 TTGGTT-TCGCAAGAAA-AGCTTTTCTTTCCTCC-ATTTTTGATAAA-TCAAAGTTTG-CCCTTA
* * *** * *
3545269 AATGAGACAATCAT-AGATTCT-AGTGATGATCTT
124 AATAAGACAAACATGA-ATTCTCAAACA-AATCTC
* * * * * *
3545302 CATTCATTTTGTGATTAGGCACTATAAACACATTCTCC-TCTTTAGGATAAATGGTATTTATGAT
1 CATTC-TTTTTTGATTAGGCACCATAAACACATTC-CCTTCATTAGGATAAATGATATTGATGCT
** ** * * ** *
3545366 TTTCTTTTACATGGAAAA-CTTTTCTTTGCC-CTATTTTCCATAAGATCAAAGTTCTTCCCTTAA
64 TTGGTTTCGCA-AGAAAAGCTTTTCTTT-CCTCCATTTTTGATAA-ATCAAAGTT-TGCCCTTAA
** * *
3545429 ATAAGACACGCATCG-ATTCTCATAA-TAGTCTC
125 ATAAGACAAACAT-GAATTCTCA-AACAAATCTC
*** * * * ** *
3545461 CATTCCTTTCAAGA-TGGGAAGCCA-AAACACATTCCCTTCATTAGGATACATGGCATTGATACT
1 CATT-CTTTTTTGATTAGGCA-CCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCT
* * *
3545524 TTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTATAT
64 TTGGTTTCGCAAGAAAAGCTTTTCTTTCCTCCATTTTTGATA-AATCAAAGTTTGCC-CTTAAAT
* * * ** *
3545589 AAGACAAACATTACTACTCATGCAAATCCC
127 AAGACAAACATGAATTCTCAAACAAATCTC
* * * * * **
3545619 CATT-TTTTTAGGATTAGGCACCATAGACATAAT-CTTCTCATTAGGATAAACCATATTGATGC-
1 CATTCTTTTT-TGATTAGGCACCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATGCT
* * * * * * *
3545681 -T-GTTTCGCAAGAAAGGCTTTT-TTCCCACCAATTATTG-TAAAGTCTAAGGTTGCGCCTCAAA
64 TTGGTTTCGCAAGAAAAGCTTTTCTTTCCTCC-ATTTTTGATAAA-TCAAAGTTTGC-CCTTAAA
* * * *** * *
3545742 TGAGACAAATATTAATTCT-AGTGATGATCTT
126 TAAGACAAACATGAATTCTCAAACA-AATCTC
* * * * * * *
3545773 CTTTCATTTTGTGATTACGCACTATAATCACATTCCCTTAATTAGGATAAATGATATTGATGATT
1 CATTC-TTTTTTGATTAGGCACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTT
** * * * * *
3545838 TTTTTTTGCATGGAAATCTTTTCTTTGCCT-TATTTTCTTGA-AAATCAAAGTTCAT-CCCTTAA
65 TGGTTTCGCAAGAAAAGCTTTTCTTT-CCTCCA-TTT-TTGATAAATCAAAGTT--TGCCCTTAA
* * *
3545900 ATAAGACAAGCATCG-ATTCTCGCAAC-AGTCTC
125 ATAAGACAAACAT-GAATTCTC-AAACAAATCTC
* *** * * * * ** *
3545932 CATTCCATTCAAGA-TGGGAAGCCA-AAACACAATCCCTTCATTAGGATACATGGCATTGATACT
1 CATT-CTTTTTTGATTAGGCA-CCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCT
* * * *
3545995 TTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCTTCTTATAT
64 TTGGTTTCGCAAGAAAAGCTTTTCTTTCCTCCATTTTTGATA-AATCAAAGTTTGC-CCTTAAAT
* * * ** *
3546060 AAGACAAACATTACTACTCATGCAAATCCC
127 AAGACAAACATGAATTCTCAAACAAATCTC
* * * * **
3546090 CATT-TTTTTTAGGA-TAGGCACCATAGACATAAT-CTTCTCATTAGGATAAACCATATTGATGC
1 CATTCTTTTTT--GATTAGGCACCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATGC
* * * * * * *
3546152 TTTTGTTTCGCAAGAAAGGCTTTT-TTCCCACCAGTTATTG-TAAAGTCTAAGTTTGCACCTCAA
63 TTTGGTTTCGCAAGAAAAGCTTTTCTTTCCTCCA-TTTTTGATAAA-TCAAAGTTTGC-CCTTAA
* * *** * *
3546215 ATGAGACAAACGTTG-ATTCT-AGTGATGATCTT
125 ATAAGACAAAC-ATGAATTCTCAAACA-AATCTC
* * * * *
3546247 CATTCATTTTGTGATTAGGCACTATAAACACATTCTCC-TCTTTAGGATAAATGGTATTGATGAT
1 CATTC-TTTTTTGATTAGGCACCATAAACACATTC-CCTTCATTAGGATAAATGATATTGATGCT
** ** * * * ** *
3546311 TTTCTTTTACATGGAAAA-CTTTTCTTAGCC-CTATTTTCCATAAGATCAAAGTTCTTCCCTTAA
64 TTGGTTTCGCA-AGAAAAGCTTTTCTT-TCCTCCATTTTTGATAA-ATCAAAGTT-TGCCCTTAA
** * *
3546374 ATAAGACATGCATCG-ATTCTCATAA-TAGTCTC
125 ATAAGACAAACAT-GAATTCTCA-AACAAATCTC
*** * * * ** *
3546406 CATTCCTTTCAAGA-TGGGAAGCCA-AAACACATTCCCTTCATTAGGATACATGGCATTGATACT
1 CATT-CTTTTTTGATTAGGCA-CCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCT
* * *
3546469 TTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTATAT
64 TTGGTTTCGCAAGAAAAGCTTTTCTTTCCTCCATTTTTGATA-AATCAAAGTTTGCC-CTTAAAT
* * * ** *
3546534 AAGACAAACATTACTACTCATGCAAATCCC
127 AAGACAAACATGAATTCTCAAACAAATCTC
* * * * * **
3546564 CATT-TTTTTAGGATTAGGCACCATAGACATAAT-CTTCTCATTAGGATAAACCATATTGATGC-
1 CATTCTTTTT-TGATTAGGCACCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATGCT
* * * * * * * *
3546626 -T-GTTTCACAAGAAAGGCTTTT-TTCCCACCAATTATTG-TAAAGTCTAAGGTTGCGCCTCAAA
64 TTGGTTTCGCAAGAAAAGCTTTTCTTTCCTCC-ATTTTTGATAAA-TCAAAGTTTGC-CCTTAAA
* * * *** * *
3546687 TGAGACAAATATTAATTCT-AGTGATGATCTT
126 TAAGACAAACATGAATTCTCAAACA-AATCTC
* * * * * * * *
3546718 CTTTCATTTTGTGATTACGCACTATAATCACTTTCCCTTAATTAGGATAAATGATATTGATGATT
1 CATTC-TTTTTTGATTAGGCACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTT
** * * * * *
3546783 TTTTTTTGCATGGAAATCTTTTCTTTGCCT-TATTTTCTTGA-AAATCAAAGTTCAT-CCCTTAA
65 TGGTTTCGCAAGAAAAGCTTTTCTTT-CCTCCA-TTT-TTGATAAATCAAAGTT--TGCCCTTAA
* * *
3546845 ATAAGACAAGCATCG-ATTCTCGCAAC-AGTCTC
125 ATAAGACAAACAT-GAATTCTC-AAACAAATCTC
*** * * * * ** *
3546877 CATTCCTTTCAAGA-TGGGAAGCCA-AAACACAATCCCTTCATTAGGATACATGGCATTGATACT
1 CATT-CTTTTTTGATTAGGCA-CCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCT
* * * * *
3546940 TTGGTGTCGCAAGAAAAACTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCTTCTTATAT
64 TTGGTTTCGCAAGAAAAGCTTTTCTTTCCTCCATTTTTGATA-AATCAAAGTTTGC-CCTTAAAT
* * * ** *
3547005 AAGACAAACATTACTACTCATGCAAATCCC
127 AAGACAAACATGAATTCTCAAACAAATCTC
* * * * * **
3547035 CATT-TTTTTTAGGA-TAGGCACAATAGACATAAT-CTTCTCATTAGGATAAACCATATTGATGC
1 CATTCTTTTTT--GATTAGGCACCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATGC
* * * * * * * *
3547097 TTTTGTTTCCCAAGAAAGGCTTTT-TTCCCACCAGTTATTG-TAAAGTCTAAGTTTGCACCTCAA
63 TTTGGTTTCGCAAGAAAAGCTTTTCTTTCCTCCA-TTTTTGATAAA-TCAAAGTTTGC-CCTTAA
* * *** * *
3547160 ATGAGACAAACGTTG-ATTCT-AGTGATGATCTT
125 ATAAGACAAAC-ATGAATTCTCAAACA-AATCTC
* * * * *
3547192 CATTCATTTTGTGATTAGGCACTATAAACACATTCTCC-TCTTTAGGATAAATGGTATTGATGAT
1 CATTC-TTTTTTGATTAGGCACCATAAACACATTC-CCTTCATTAGGATAAATGATATTGATGCT
** ** * * ** *
3547256 TTTCTTTTACATGGAAAA-CTTTTCTTTGCC-CTATTTTCCATAAGATCAAAGTTCTTCCCTTAA
64 TTGGTTTCGCA-AGAAAAGCTTTTCTTT-CCTCCATTTTTGATAA-ATCAAAGTT-TGCCCTTAA
*** * *
3547319 ATAAGACACGTATCG-ATTCTCATAA-TAGTCTC
125 ATAAGACAAACAT-GAATTCTCA-AACAAATCTC
*** * * * ** *
3547351 CATTCCTTTCAAGA-TGGGAAGCCA-AAACACATTCCCTTCATTAGGATACATGGCATTGATACT
1 CATT-CTTTTTTGATTAGGCA-CCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCT
* * *
3547414 TTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTATAT
64 TTGGTTTCGCAAGAAAAGCTTTTCTTTCCTCCATTTTTGATA-AATCAAAGTTTGCC-CTTAAAT
* * * ** *
3547479 AAGACAAACATTACTACTCATGCAAATCCC
127 AAGACAAACATGAATTCTCAAACAAATCTC
* * * * * **
3547509 CATT-TTTTTAGGATTAGGCACCATAGACATAAT-CTTCTCATTAGGATAAACCATATTGATGC-
1 CATTCTTTTT-TGATTAGGCACCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATGCT
* * * * * * *
3547571 -T-GTTTCGCAAGAAAGGCTTTT-TTCCCACCAATTATTG-TAAAGTCTAAGGTTGCGCCTCAAA
64 TTGGTTTCGCAAGAAAAGCTTTTCTTTCCTCC-ATTTTTGATAAA-TCAAAGTTTGC-CCTTAAA
* * * *** * *
3547632 TGAGACAAATATTAATTCT-AGTGATGATCTT
126 TAAGACAAACATGAATTCTCAAACA-AATCTC
* * * * * * * *
3547663 CTTTCATTTTGTGATTACGCACTATAATCACTTTCCCTTAATTAGGATAAATGATATTGATGATT
1 CATTC-TTTTTTGATTAGGCACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTT
** * * * * *
3547728 TTTTTTTGCATGGAAATCTTTTCTTTGCCT-TATTTTCTTGA-AAATCAAAGTTCAT-CCCTTAA
65 TGGTTTCGCAAGAAAAGCTTTTCTTT-CCTCCA-TTT-TTGATAAATCAAAGTT--TGCCCTTAA
* * *
3547790 ATAAGACAAGCATCG-ATTCTCGCAAC-AGTCTC
125 ATAAGACAAACAT-GAATTCTC-AAACAAATCTC
*** * * * * ** *
3547822 CATTCCTTTCAAGA-TGGGAAGCCA-AAACACAATCCCTTCATTAGGATACATGGCATTGATACT
1 CATT-CTTTTTTGATTAGGCA-CCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCT
* * * * *
3547885 TTGGTGTCGCAAGAAAAACTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCTTCTTATAT
64 TTGGTTTCGCAAGAAAAGCTTTTCTTTCCTCCATTTTTGATA-AATCAAAGTTTGC-CCTTAAAT
* * * ** *
3547950 AAGACAAACATTACTACTCATGCAAATCCC
127 AAGACAAACATGAATTCTCAAACAAATCTC
* * * * * **
3547980 CATT-TTTTTAGGATTAGGCACCATAGACATAAT-CTTCTCATTAGGATAAACCATATTGATGC-
1 CATTCTTTTT-TGATTAGGCACCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATGCT
* * * * * * *
3548042 -T-GTTTCGCAAGAAAGGCTTTT-TTCCCACCAATTATTG-TAAAGTCTAAGGTTGCGCCTCAAA
64 TTGGTTTCGCAAGAAAAGCTTTTCTTTCCTCC-ATTTTTGATAAA-TCAAAGTTTGC-CCTTAAA
* * * * *** * *
3548103 TGAGATAAATATTAATTCT-AGTGATGATCTT
126 TAAGACAAACATGAATTCTCAAACA-AATCTC
* * * * * * *
3548134 CTTTCATTTTGTGATTACGCACTATAATCACATTCCCTTAATTAGGATAAATGATATTGATGATT
1 CATTC-TTTTTTGATTAGGCACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTT
** * * * * *
3548199 TTTTTTTGCATGGAAATCTTTTCTTTGCCT-TATTTTCTTGA-AAATCAAAGTTCAT-CCCTTAA
65 TGGTTTCGCAAGAAAAGCTTTTCTTT-CCTCCA-TTT-TTGATAAATCAAAGTT--TGCCCTTAA
* * *
3548261 ATAAGACAAGCATCG-ATTCTCGCAAC-AGTCTC
125 ATAAGACAAACAT-GAATTCTC-AAACAAATCTC
*** * * * * ** *
3548293 CATTCCTTTCAAGA-TGGGAAGCCA-AAACACAATCCCTTCATTAGGATACATGGCATTGATACT
1 CATT-CTTTTTTGATTAGGCA-CCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCT
* * * *
3548356 TTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCTTCTTATAT
64 TTGGTTTCGCAAGAAAAGCTTTTCTTTCCTCCATTTTTGATA-AATCAAAGTTTGC-CCTTAAAT
* * * ** *
3548421 AAGACAAACATTACTACTCATGCAAATCCC
127 AAGACAAACATGAATTCTCAAACAAATCTC
* * * * * **
3548451 CATT-TTTTTAGGATTAGGCACCATAGACATAAT-CTTCTCATTAGGATAAACCATATTGATGC-
1 CATTCTTTTT-TGATTAGGCACCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATGCT
* * * * * * *
3548513 -T-GTTTCGCAAGAAAGGCTTTT-TTCCCACCAATTATTG-TAAAGTCTAAGGTTGCGCCTCAAA
64 TTGGTTTCGCAAGAAAAGCTTTTCTTTCCTCC-ATTTTTGATAAA-TCAAAGTTTGC-CCTTAAA
* * * *** * *
3548574 TGAGACAAATATTAATTCT-AGTGATGATCTT
126 TAAGACAAACATGAATTCTCAAACA-AATCTC
* * * * * * * *
3548605 CTTTCATTTTGTGATTACGCACTATAATCACTTTCCCTTAATTAGGATAAATGATATTGATGATT
1 CATTC-TTTTTTGATTAGGCACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTT
** * * * * *
3548670 TTTTTTTGCATGGAAATCTTTTCTTTGCCT-TATTTTCTTGA-AAATCAAAGTTCAT-CCCTTAA
65 TGGTTTCGCAAGAAAAGCTTTTCTTT-CCTCCA-TTT-TTGATAAATCAAAGTT--TGCCCTTAA
* * *
3548732 ATAAGACAAGCATCG-ATTCTCGCAAC-AGTCTC
125 ATAAGACAAACAT-GAATTCTC-AAACAAATCTC
*** * * * * ** *
3548764 CATTCCTTTCAAGA-TGGGAAGCCA-AAACACAATCCCTTCATTAGGATACATGGCATTGATACT
1 CATT-CTTTTTTGATTAGGCA-CCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCT
* * * * *
3548827 TTGGTGTCGCAAGAAAAACTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCTTCTTATAT
64 TTGGTTTCGCAAGAAAAGCTTTTCTTTCCTCCATTTTTGATA-AATCAAAGTTTGC-CCTTAAAT
* * * ** *
3548892 AAGACAAACATTACTACTCATGCAAATCCC
127 AAGACAAACATGAATTCTCAAACAAATCTC
* * * * * **
3548922 CATT-TTTTTAGGATTAGGCACCATAGACATAAT-CTTCTCATTAGGATAAACCATATTGATGC-
1 CATTCTTTTT-TGATTAGGCACCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATGCT
* * * * * * *
3548984 -T-GTTTCGCAAGAAAGGCTTTT-TTCCCACCAATTATTG-TAAAGTCTAAGGTTGCGCCTCAAA
64 TTGGTTTCGCAAGAAAAGCTTTTCTTTCCTCC-ATTTTTGATAAA-TCAAAGTTTGC-CCTTAAA
* * * * *** * *
3549045 TGAGATAAATATTAATTCT-AGTGATGATCTT
126 TAAGACAAACATGAATTCTCAAACA-AATCTC
* * * * * * *
3549076 CTTTCATTTTGTGATTACGCACTATAATCACATTCCCTTAATTAGGATAAATGATATTGATGATT
1 CATTC-TTTTTTGATTAGGCACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTT
** * * * * *
3549141 TTTTTTTGCATGGAAATCTTTTCTTTGCCT-TATTTTCTTGA-AAATCAAAGTTCAT-CCCTTAA
65 TGGTTTCGCAAGAAAAGCTTTTCTTT-CCTCCA-TTT-TTGATAAATCAAAGTT--TGCCCTTAA
* * *
3549203 ATAAGACAAGCATCG-ATTCTCGCAAC-AGTCTC
125 ATAAGACAAACAT-GAATTCTC-AAACAAATCTC
*** * * * * ** *
3549235 CATTCCTTTCAAGA-TGGGAAGCCA-AAACACAATCCCTTCATTAGGATACATGGCATTGATACT
1 CATT-CTTTTTTGATTAGGCA-CCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCT
* * * *
3549298 TTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCTTCTTATAT
64 TTGGTTTCGCAAGAAAAGCTTTTCTTTCCTCCATTTTTGATA-AATCAAAGTTTGC-CCTTAAAT
* * * ** *
3549363 AAGACAAACATTACTACTCATGCAAATCCC
127 AAGACAAACATGAATTCTCAAACAAATCTC
* * * * **
3549393 CATT-TTTTTTAGGA-TAGGCACCATAGACATAAT-CTTCTCATTAGGATAAACCATATTGATGC
1 CATTCTTTTTT--GATTAGGCACCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATGC
* * * * * * *
3549455 TTTTGTTTCGCAAGAAAGGCTTTT-TTCCCACCAGTTATTG-TAAAGTCTAAGTTTGCACCTCAA
63 TTTGGTTTCGCAAGAAAAGCTTTTCTTTCCTCCA-TTTTTGATAAA-TCAAAGTTTGC-CCTTAA
* * *** * *
3549518 ATGAGACAAACGTTG-ATTCT-AGTGATGATCTT
125 ATAAGACAAAC-ATGAATTCTCAAACA-AATCTC
* * * *
3549550 CACTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGATT
1 CATTC-TTTTTTGATTAGGCACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTT
** * * * *
3549615 TTTTTTTGCATGGAAATG-TTTTCTTTGCCT-TATTTTCTTGA-AAATCAAAGTTCAT-CCCTTA
65 TGGTTTCGCA-AGAAAAGCTTTTCTTT-CCTCCA-TTT-TTGATAAATCAAAGTT--TGCCCTTA
* * * *
3549676 AATAAGACAAGCATCAATTCTCGTAAC-AGTCTC
124 AATAAGACAAACATGAATTCTC-AAACAAATCTC
*** * * * * * * **
3549709 CATTCCTTTCAAGACTGGGAAGCCA-AAACACATTCTCTTCTTTAGGATACATGGCATTGATGCT
1 CATT-CTTTTTTGATTAGGCA-CCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCT
* * * * *
3549773 TTGGTGTCGCAAAAAAAGCTTTTCTTTCCTCCGTTTTTGATGGAATCAAAGTTTGCCTCTTATAT
64 TTGGTTTCGCAAGAAAAGCTTTTCTTTCCTCCATTTTTGAT-AAATCAAAGTTTGCC-CTTAAAT
* * * ** *
3549838 AAGACAAACATTACTACTCATGCAAATCCC
127 AAGACAAACATGAATTCTCAAACAAATCTC
* * * * * **
3549868 CATT-TTTTTAGGATTAGGCACCATAGACATAAT-CTTCTCATTAGGATAAACCATATTGATGC-
1 CATTCTTTTT-TGATTAGGCACCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATGCT
* * * * * * *
3549930 -T-GTTTCGCAAGAAAGGCTTTT-TTCCCACCAATTATTG-TAAAGTCTAAGGTTGCGCCTCAAA
64 TTGGTTTCGCAAGAAAAGCTTTTCTTTCCTCC-ATTTTTGATAAA-TCAAAGTTTGC-CCTTAAA
* * * *** * *
3549991 TGAGACAAATATTAATTCT-AGTGATGATCTT
126 TAAGACAAACATGAATTCTCAAACA-AATCTC
* * * * * * *
3550022 CTTTCATTTTGTGATTACGCACTATAATCACATTCCCTTAATTAGGATAAATGATATTGATGATT
1 CATTC-TTTTTTGATTAGGCACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTT
** * * * * *
3550087 TTTTTTTGCATGGAAATCTTTTCTTTGCCT-TATTTTCTTGA-AAATCAAAGTTCAT-CCCTTAA
65 TGGTTTCGCAAGAAAAGCTTTTCTTT-CCTCCA-TTT-TTGATAAATCAAAGTT--TGCCCTTAA
* * *
3550149 ATAAGACAAGCATCG-ATTCTCGCAAC-AGTCTC
125 ATAAGACAAACAT-GAATTCTC-AAACAAATCTC
*** * * * * ** *
3550181 CATTCCTTTCAAGA-TGGGAAGCCA-AAACACAATCCCTTCATTAGGATACATGGCATTGATACT
1 CATT-CTTTTTTGATTAGGCA-CCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCT
* * * *
3550244 TTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCTTCTTATAT
64 TTGGTTTCGCAAGAAAAGCTTTTCTTTCCTCCATTTTTGATA-AATCAAAGTTTGC-CCTTAAAT
* * * ** *
3550309 AAGACAAACATTACTACTCATGCAAATCCC
127 AAGACAAACATGAATTCTCAAACAAATCTC
* * * * **
3550339 CATT-TTTTTTAGGA-TAGGCACCATAGACATAAT-CTTCTCATTAGGATAAACCATATTGATGC
1 CATTCTTTTTT--GATTAGGCACCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATGC
* * * * * * *
3550401 TTTTGTTTCGCAAGAAAGGCTTTT-TTCCCACCAGTTATTG-TAAAGTCTAAGTTTGCACCTCAA
63 TTTGGTTTCGCAAGAAAAGCTTTTCTTTCCTCCA-TTTTTGATAAA-TCAAAGTTTGC-CCTTAA
* * *** * *
3550464 ATGAGACAAACGTTG-ATTCT-AGTGATGATCTT
125 ATAAGACAAAC-ATGAATTCTCAAACA-AATCTC
* * *
3550496 CATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGATT
1 CATTC-TTTTTTGATTAGGCACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTT
** * * * *
3550561 TTTTTTTGCATGGAAATG-TTTTCTTTGCCT-TATTTTCTTGA-AAATCAAAGTTCAT-CCCTTA
65 TGGTTTCGCA-AGAAAAGCTTTTCTTT-CCTCCA-TTT-TTGATAAATCAAAGTT--TGCCCTTA
* * * *
3550622 AATAAGACAAGCATCAATTCTCGTAAC-AGTCTC
124 AATAAGACAAACATGAATTCTC-AAACAAATCTC
*** * * * * * * **
3550655 CATTCCTTTCAAGACTGGGAAGCCA-AAACACATTCTCTTCTTTAGGATACATGGCATTGATGCT
1 CATT-CTTTTTTGATTAGGCA-CCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCT
* * * * * **
3550719 TTGGTGTCGCAAAAAAAGCTTTTCTTTCCTCCGTTTTTGATGGAATCAAAGTTTGTCTCTTATTT
64 TTGGTTTCGCAAGAAAAGCTTTTCTTTCCTCCATTTTTGAT-AAATCAAAGTTTG-CCCTTAAAT
* ** *
3550784 AAGACAAACATGAATACGT-GTACAAATCAC
127 AAGACAAACATGAATTC-TCAAACAAATCTC
* * * * * *
3550814 CATTCTTTTCTTGATTAGGCACCATAAACATAGT-CTTCTCATTAGGATACATTATATTGAAGCT
1 CATTCTTTT-TTGATTAGGCACCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATGCT
* * * * * * ** ** * *
3550878 TTGGATTGGCAAGAAATGCTTTT-TTCCCACCAAATTTTG-TATGGTGTAAGTTTGTGCCTCAAA
64 TTGGTTTCGCAAGAAAAGCTTTTCTTTCCTCC-ATTTTTGATA-AATCAAAGTTTG-CCCTTAAA
* * ** *
3550941 TGAGGA-AAACATGGATTCT-AGAGATGAA-CTT
126 T-AAGACAAACATGAATTCTCA-A-ACAAATCTC
* * * * * * * * *
3550972 GATTCATTTTGTGATTAAGCACTAGAAAGACATTCTCTTCAATAGGATAAATGATATTGATGATT
1 CATTC-TTTTTTGATTAGGCACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTT
** * ** * * * *
3551037 TTCTTTTGCCTGAAAATCTTATCTTTTCC-CTATTTCCCTT-A-AAATCAAAATTCAT-CCCTTA
65 TGGTTTCGCAAGAAAAGCTTTTC-TTTCCTCCATTT---TTGATAAATCAAAGTT--TGCCCTTA
* ** * *
3551098 AATAAGATAGGCATCG-ATTCTCATAA-TAGTCTC
124 AATAAGACAAACAT-GAATTCTCA-AACAAATCTC
*** * * * **
3551131 CATTCCTTTCAAGATTGGGAAGCCA-AAACACATTCCCTTCATTAGGATACATGGCATTGATGCT
1 CATT-CTTTTTTGATTAGGCA-CCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCT
* * * *
3551195 TTGGTGTCGCAAGAAAAGCTTTCCTTTCCGTCC-CTTTTGATAGAATCAAAGTTTGCCTCTTATA
64 TTGGTTTCGCAAGAAAAGCTTTTCTTTCC-TCCATTTTTGATA-AATCAAAGTTTGCC-CTTAAA
* *
3551259 TAAGACAAACATGAATACTCAAACAAATCCC
126 TAAGACAAACATGAATTCTCAAACAAATCTC
3551290 CATTCTTTTCTTGATTAGGCACCATAAACA
1 CATTCTTTT-TTGATTAGGCACCATAAACA
3551320 TAGCCTTCTG
Statistics
Matches: 5121, Mismatches: 1655, Indels: 1016
0.66 0.21 0.13
Matches are distributed among these distances:
153 28 0.01
154 302 0.06
155 462 0.09
156 257 0.05
157 446 0.09
158 2097 0.41
159 1184 0.23
160 243 0.05
161 89 0.02
162 13 0.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.36
Consensus pattern (156 bp):
CATTCTTTTTTGATTAGGCACCATAAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTT
GGTTTCGCAAGAAAAGCTTTTCTTTCCTCCATTTTTGATAAATCAAAGTTTGCCCTTAAATAAGA
CAAACATGAATTCTCAAACAAATCTC
Found at i:3556630 original size:42 final size:42
Alignment explanation
Indices: 3556575--3556693 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
3556565 TTCTTCTCTC
* *
3556575 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
3556617 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* * *
3556659 CTCCTCCTATCATCGCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
3556694 TTGAGGGCTA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.08, C:0.45, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:3556635 original size:24 final size:23
Alignment explanation
Indices: 3556599--3556684 Score: 74
Period size: 24 Copynumber: 3.8 Consensus size: 23
3556589 CCTCCTCTCT
*
3556599 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATC-CTCCTGTCTCTCCTC
* *
3556623 CTATCATCCCTCC--TATCT-CTA
1 CTATCAT-CCTCCTGTCTCTCCTC
3556644 CTATC-T-CTCCTGTCTCTCCTC
1 CTATCATCCTCCTGTCTCTCCTC
*
3556665 CTATCATCGCTCCTCTCTCT
1 CTATCATC-CTCCTGTCTCT
3556685 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 20 0.41
25 1 0.02
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.42
Consensus pattern (23 bp):
CTATCATCCTCCTGTCTCTCCTC
Found at i:3556659 original size:18 final size:18
Alignment explanation
Indices: 3556590--3556660 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
3556580 CCTGTCATCC
* *
3556590 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
3556608 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
3556630 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
3556650 CTCCTGTCTCT
1 CTCCTGTCTCT
3556661 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:3559349 original size:475 final size:477
Alignment explanation
Indices: 3558457--3559357 Score: 1262
Period size: 475 Copynumber: 1.9 Consensus size: 477
3558447 CAAACATTAG
* * *
3558457 GATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAGG
1 GATTAGGCACCATAAACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTGGTTTCGCAAG
* * *
3558522 AAAGGCTTTTTTCCCACCAGTTATTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAAACGTTGA
66 AAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAAACATGGA
* * *
3558587 TTCTAGTGATTATCTTCATTCATTTTGTGATTAGCCACTATAAACACATTCCCTTCATTAGGATA
131 TTCTAGTGATTAACTTCATTCATTTTGTGATTAGCCACTAGAAACACATTCCCTTCAATAGGATA
* * * *
3558652 AATGATATTGATGATTTTTTTTTTGCATGGAACTCTTTTCTTTGCCTTATTTTCTTGAAAATCAA
196 AATGATATTGATGAATTTTCTTTTGCATGGAAATCTTATCTTTGCCTTATTTTCTTGAAAATCAA
* *
3558717 AGTTCATCTCTTAAATAAGACAAGCACCAATTCTCGTAATAGCCTCCATTCCTTTCAAGACTGGG
261 AATTCATCTCTTAAATAAGACAAGCACCAATTCTCATAATAGCCTCCATTCCTTTCAAGACTGGG
* ** * *
3558782 AAGCCAAAACACATTTTCTTCTTTAGGATACATGGCAGTGATGCTTTGGTGTTGCAAAAAAAGCT
326 AAACCAAAACACATTCCCTTCATTAGGATACATGACAGTGATGCTTTGGTGTTGCAAAAAAAGCT
* *
3558847 TTTCTTTCCTCTGTTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATGAATGCGCA
391 TTCCTTTCCTCAGTTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATGAATGCGCA
3558912 TACAAATCCCCATTCTTTTCTT
456 TACAAATCCCCATTCTTTTCTT
* * **
3558934 GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATTATATTGATGCTTTGGATTT-GCAA
1 GATTAGGCACCATAAACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTGG-TTTCGCAA
* ** * ** ** *
3558998 GAAATGCTTTTTTCCTGCCAATTTTTGTAGGGTCTAAGTTTGTGCCTCAAATGAGGCAAACATGG
65 GAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAAACATGG
* *
3559063 ATTCTAGTGA-TAACTTGATTCATTTTGTGATTAAG-CACTAGAAAGACATTCTCC-TCAATAGG
130 ATTCTAGTGATTAACTTCATTCATTTTGTGATT-AGCCACTAGAAACACATTC-CCTTCAATAGG
3559125 ATAAATGATATTGAT-AATTTTCTTTTGCCA-GGAAATCTTATCTTTGCCTTATTTTCCTT-AAA
193 ATAAATGATATTGATGAATTTTCTTTTG-CATGGAAATCTTATCTTTGCCTTATTTT-CTTGAAA
* * * * * *
3559187 ATCAAAATTCGT-TCCTTAAATAAGATAAGCATCGATTCTCATAATAGTCTCCTTTCCTTTCAAG
256 ATCAAAATTCATCT-CTTAAATAAGACAAGCACCAATTCTCATAATAGCCTCCATTCCTTTCAAG
* * *
3559251 ATTGGGAAACCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTTGCAAGA
320 ACTGGGAAACCAAAACACATTCCCTTCATTAGGATACATGACAGTGATGCTTTGGTGTTGCAAAA
3559316 AAAGCTTTCCTTTCCAT-AGTTTTTGATAGAATCAAAGTTTGC
385 AAAGCTTTCCTTTCC-TCAGTTTTTGATAGAATCAAAGTTTGC
3559358 ACCAATTTTT
Statistics
Matches: 371, Mismatches: 46, Indels: 16
0.86 0.11 0.04
Matches are distributed among these distances:
474 1 0.00
475 185 0.50
476 62 0.17
477 120 0.32
478 3 0.01
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (477 bp):
GATTAGGCACCATAAACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTGGTTTCGCAAG
AAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAAACATGGA
TTCTAGTGATTAACTTCATTCATTTTGTGATTAGCCACTAGAAACACATTCCCTTCAATAGGATA
AATGATATTGATGAATTTTCTTTTGCATGGAAATCTTATCTTTGCCTTATTTTCTTGAAAATCAA
AATTCATCTCTTAAATAAGACAAGCACCAATTCTCATAATAGCCTCCATTCCTTTCAAGACTGGG
AAACCAAAACACATTCCCTTCATTAGGATACATGACAGTGATGCTTTGGTGTTGCAAAAAAAGCT
TTCCTTTCCTCAGTTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATGAATGCGCA
TACAAATCCCCATTCTTTTCTT
Found at i:3559647 original size:347 final size:344
Alignment explanation
Indices: 3559015--3559703 Score: 979
Period size: 347 Copynumber: 2.0 Consensus size: 344
3559005 TTTTTTCCTG
** ** *
3559015 CCAATTTTTGTAGGGTCTAAGTTTGTGCCTCAAATGAGGCAAACATGGATTCTAGTGATAACTTG
1 CCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGAAAAACATGGATTCTAGTGATAACTTC
* * *
3559080 ATTCATTTTGTGATTAAGCACTAGAAAGACATTCTCCTCAATAGGATAAATGATATTGATAATTT
66 ATTCATTTTGTGATTAAGCACTAGAAACACAATCTCATCAATAGGATAAATGATATTGATAATTT
* * * *
3559145 TCTTTTGCCAGGAAATCTTATCTTTGCCTTATTTTCCTTAAAATCAAAATTCGTTCCTTAAATAA
131 TCTTTTGCCAGGAAATCTTATCTTTGCCCTATTCTCCTTAAAATCAAAATTCATCCCTTAAATAA
* * ** *
3559210 GATAAGCATCGATTCTCATAATAGTCTCCTTTCCTTTCAAGATTGGGAAACCAAAACACATTCCC
196 GACAAGCATCGATTCTCATAACAGTCTCAATTCCTTTCAAGACTGGGAAACCAAAACACATTCCC
* * *
3559275 TTCATTAGGATACATGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTCCTTTCCA-TAGTTTT
261 TTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTCCTTGCCACCA-TTTT
3559339 TGATAGAATCAAAGTTTGCA
325 TGATAGAATCAAAGTTTGCA
* *
3559359 CCAATTTTTGTAAAGTCTAAGTTTGTGTCTCAAATGAGAAAAACATGGATTCCTA-TGATGATCT
1 CCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGAAAAACATGGATT-CTAGTGAT-AACT
* * * *
3559423 TCATTCATTTTTTGATTAGGCACTATAAACACAATCTCATCATTAGGATAAATGATATTGATGAT
64 TCATTCATTTTGTGATTAAGCACTAGAAACACAATCTCATCAATAGGATAAATGATATTGAT-A-
* * * *
3559488 TTTTTTTTTTG-CATGGAAATCTTTTCTTTGCCCTATTCTCCTTAAAATCAAAGTTCATCCCTTA
127 ATTTTCTTTTGCCA-GGAAATCTTATCTTTGCCCTATTCTCCTTAAAATCAAAATTCATCCCTTA
* * *
3559552 AATAAGACAAGCATCGATTCTCGTAACAGTCTCAATTCCTTTCAAGACTGGGAAGCCAAATCACA
191 AATAAGACAAGCATCGATTCTCATAACAGTCTCAATTCCTTTCAAGACTGGGAAACCAAAACACA
* * *
3559617 TTCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTCCTTGCGACCA
256 TTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTCCTTGCCACCA
3559682 TTTTTGATAGAATCAAAGTTTG
321 TTTTTGATAGAATCAAAGTTTG
3559704 TCTCTTATAC
Statistics
Matches: 303, Mismatches: 36, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
344 50 0.17
345 60 0.20
346 3 0.01
347 189 0.62
348 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.36
Consensus pattern (344 bp):
CCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGAAAAACATGGATTCTAGTGATAACTTC
ATTCATTTTGTGATTAAGCACTAGAAACACAATCTCATCAATAGGATAAATGATATTGATAATTT
TCTTTTGCCAGGAAATCTTATCTTTGCCCTATTCTCCTTAAAATCAAAATTCATCCCTTAAATAA
GACAAGCATCGATTCTCATAACAGTCTCAATTCCTTTCAAGACTGGGAAACCAAAACACATTCCC
TTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTCCTTGCCACCATTTTT
GATAGAATCAAAGTTTGCA
Found at i:3560127 original size:822 final size:821
Alignment explanation
Indices: 3558536--3560177 Score: 2337
Period size: 822 Copynumber: 2.0 Consensus size: 821
3558526 GCTTTTTTCC
* * * * *
3558536 CACCAGTTATTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAAACGTTGATTCTAGTGATTATC
1 CACCAATTATTGTAAAGTCTAAGTTTGCACCTCAAATGAGAAAAACATGGATTCTAGTGATGATC
* *
3558601 TTCATTCATTTTGTGATTAGCCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGA
66 TTCATTCATTTTGTGATTAGCCACTATAAACACAATCCCATCATTAGGATAAATGATATTGATGA
* * * *
3558666 TTTTTTTTTTGCATGGAACTCTTTTCTTTGCCTTATTTTCTTGAAAATCAAAGTTCATCTCTTAA
131 TTTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTCCTTGAAAATCAAAGTTCATCCCTTAA
* *
3558731 ATAAGACAAGCACCAATTCTCGTAATAGCCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACAT
196 ATAAGACAAGCACCAATTCTCGTAACAGCCTCAATTCCTTTCAAGACTGGGAAGCCAAAACACAT
* * * * * * **
3558796 TTTCTTCTTTAGGATACATGGCAGTGATGCTTTGGTGTTGCAAAAAAAGCTTTTCTTTCCTCTGT
261 TCTCTTCATTAGGATACATGGCAGTGATGCTTTGGTGTCGCAAAAAAAGCTTTCCTTGCCACCAT
* *
3558861 TTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATGAATGCGCATACAAATCCCCATT
326 TTTTGATAGAATCAAAGTTTGCCTCTTATACAAGACAAACATGAATACGCATACAAATCCCCATT
** * * *
3558926 CTTTTCTTGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATTATATTGATGCTTTGGA
391 CTTTTCAAGAGTAGGCAACATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGA
* * ** ** *
3558991 TTTGCAAGAAATGCTTTTTTCCTGCCAATTTTTGTAGGGTCTAAGTTTGTGCCTCAAATGAGGCA
456 TTTGCAAGAAAGGCTATTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACA
*
3559056 AACATGGATTCTAGTGATAACTTGATTCATTTTGTGATTAAGCACTAGAAAGACATTCTCCTCAA
521 AACATGGATTCTAGTGATAACTTCATTCATTTTGTGATTAAGCACTAGAAAGACATTCTCCTCAA
*
3559121 TAGGATAAATGATATTGATAATTTTCTTTTGCCAGGAAATCTTATCTTTGCCTTATTTTCCTTAA
586 TAGGATAAATGATATTGATAATTTTCTTTTGCCAGGAAATCTTATCTTTGCCCTATTTTCCTTAA
* * * * *
3559186 AATCAAAATTCGTTCCTTAAATAAGATAAGCATCGATTCTCATAATAGTCTCCTTTCCTTTCAAG
651 AATCAAAATTCATCCCTTAAATAAGACAAGAATCAATTCTCATAATAGTCTCCTTTCCTTTCAAG
* *
3559251 ATTGGGAAACCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTTGCAAGA
716 ACTGGGAAACCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTTGCAAGA
*
3559316 AAAGCTTTCCTTTCCATAGTTTTTGATAGAATCAAAGTTTG
781 AAAGCTTTCCTTTCCACAGTTTTTGATAGAATCAAAGTTTG
* ***
3559357 CACCAATTTTTGTAAAGTCTAAGTTTGTGTCTCAAATGAGAAAAACATGGATTCCTA-TGATGAT
1 CACCAATTATTGTAAAGTCTAAGTTTGCACCTCAAATGAGAAAAACATGGATT-CTAGTGATGAT
* * *
3559421 CTTCATTCATTTTTTGATTAGGCACTATAAACACAATCTCATCATTAGGATAAATGATATTGATG
65 CTTCATTCATTTTGTGATTAGCCACTATAAACACAATCCCATCATTAGGATAAATGATATTGATG
3559486 ATTTTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTCTCCTT-AAAATCAAAGTTCATCCCT
130 A-TTTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATT-TCCTTGAAAATCAAAGTTCATCCCT
* * * *
3559550 TAAATAAGACAAGCATCGATTCTCGTAACAGTCTCAATTCCTTTCAAGACTGGGAAGCCAAATCA
193 TAAATAAGACAAGCACCAATTCTCGTAACAGCCTCAATTCCTTTCAAGACTGGGAAGCCAAAACA
* * *
3559615 CATTCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTCCTTGCGAC
258 CATTCTCTTCATTAGGATACATGGCAGTGATGCTTTGGTGTCGCAAAAAAAGCTTTCCTTGCCAC
* * * * * * *
3559680 CATTTTTGATAGAATCAAAGTTTGTCTCTTATACAAGACAACCTTGAATACTCGTACTAATCTCC
323 CATTTTTGATAGAATCAAAGTTTGCCTCTTATACAAGACAAACATGAATACGCATACAAATCCCC
* * * *
3559745 ATT-TTTTCCAAGAGTATGCAACATAGACATAGTCTTCTCCTTAGGATGCATCATATTGATGCTT
388 ATTCTTTT-CAAGAGTAGGCAACATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTT
* * *
3559809 TGGTTTTGTAGGAAAGGC-ATTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGA
452 TGGATTTGCAAGAAAGGCTATTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGA
* * ** * *
3559873 GACAAGCATGGATTCTGGTGATGATTTTCATTCATTTTGTGATTAGGCACTA-TAAGCACATTCT
517 GACAAACATGGATTCTAGTGAT-AACTTCATTCATTTTGTGATTAAGCACTAGAAAG-ACATTCT
* *
3559937 CCTTAATAGGATAAATGATATTGATGATTTTCTTTTGCACA-GAAATCTTATCTTTGCCCTATTT
580 CCTCAATAGGATAAATGATATTGATAATTTTCTTTTGC-CAGGAAATCTTATCTTTGCCCTATTT
* * *
3560001 TCCTTAAAATCAAAGTTCATCCCTTAAATAAGACACGAATCAATTCTCGTAATAGTCT-CTATTC
644 TCCTTAAAATCAAAATTCATCCCTTAAATAAGACAAGAATCAATTCTCATAATAGTCTCCT-TTC
* * *
3560065 CTTTCAAGACTGGGAAGCCAAAACACATTCCCTTCATTAGG-TCACATGGCTTTGATGCTTTGGG
708 CTTTCAAGACTGGGAAACCAAAACACATTCCCTTCATTAGGAT-ACATGACATTGATGCTTTGGG
* * *
3560129 GTTGCAAGAAAAGCTTTTCTTTCTACCGTTTTTGATAGAATCAAAGTTT
772 GTTGCAAGAAAAGCTTTCCTTTCCACAGTTTTTGATAGAATCAAAGTTT
3560178 TTCTTTTCTA
Statistics
Matches: 722, Mismatches: 90, Indels: 17
0.87 0.11 0.02
Matches are distributed among these distances:
821 182 0.25
822 534 0.74
823 6 0.01
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.37
Consensus pattern (821 bp):
CACCAATTATTGTAAAGTCTAAGTTTGCACCTCAAATGAGAAAAACATGGATTCTAGTGATGATC
TTCATTCATTTTGTGATTAGCCACTATAAACACAATCCCATCATTAGGATAAATGATATTGATGA
TTTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTCCTTGAAAATCAAAGTTCATCCCTTAA
ATAAGACAAGCACCAATTCTCGTAACAGCCTCAATTCCTTTCAAGACTGGGAAGCCAAAACACAT
TCTCTTCATTAGGATACATGGCAGTGATGCTTTGGTGTCGCAAAAAAAGCTTTCCTTGCCACCAT
TTTTGATAGAATCAAAGTTTGCCTCTTATACAAGACAAACATGAATACGCATACAAATCCCCATT
CTTTTCAAGAGTAGGCAACATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGA
TTTGCAAGAAAGGCTATTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACA
AACATGGATTCTAGTGATAACTTCATTCATTTTGTGATTAAGCACTAGAAAGACATTCTCCTCAA
TAGGATAAATGATATTGATAATTTTCTTTTGCCAGGAAATCTTATCTTTGCCCTATTTTCCTTAA
AATCAAAATTCATCCCTTAAATAAGACAAGAATCAATTCTCATAATAGTCTCCTTTCCTTTCAAG
ACTGGGAAACCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTTGCAAGA
AAAGCTTTCCTTTCCACAGTTTTTGATAGAATCAAAGTTTG
Found at i:3560254 original size:475 final size:476
Alignment explanation
Indices: 3559357--3562306 Score: 3356
Period size: 475 Copynumber: 6.3 Consensus size: 476
3559347 TCAAAGTTTG
* *
3559357 CACCAATTTTTGTAAAGTCTAAGTTTGTGTCTCAAATGAGAAAAACATGGATTCCTA-TGATGAT
1 CACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATT-CTAGTGATGAT
* * *
3559421 CTTCATTCATTTTTTGATTAGGCACTATAAACACAATCTCATCATTAGGATAAATGATATTGATG
65 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATG
* ** *
3559486 ATTTTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTCTCCTTAAAATCAAAGTTCATCCCTT
130 A--TTTTCTTTTGCACAGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTT
*
3559551 AAATAAGACAAGCATCGATTCTCGTAACAGTCTCAATTCCTTTCAAGACTGGGAAGCCAAATCAC
193 AAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAATCAC
* * * *
3559616 ATTCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTCCTTGCGACC
258 ATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACC
* * * * * *
3559681 ATTTTTGATAGAATCAAAGTTTGTCTCTTATACAAGACAACCTTGAATACTCGTACTAATCTCCA
323 GTTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATACTCATACTAATCCCCA
* * * * * * *
3559746 TT-TTTTCCAAGAGTATGCAACATAGACATAGTCTTCTCCTTAGGATGCATCATATTGATGCTTT
388 TTCTTTT-CTAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTT
* * *
3559810 GGTTTTGTAGGAAAGGC-ATTTTCC
452 GGTTTTGCAAGAAAGGCTTTTTTCC
* * *
3559834 CACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAGCATGGATTCTGGTGATGATT
1 CACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTGATGATC
* * *
3559899 TTCATTCATTTTGTGATTAGGCACTATAAGCACATTCTCCTTAATAGGATAAATGATATTGATGA
66 TTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGA
*
3559964 TTTTCTTTTGCACAGAAATCTTATCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAA
131 TTTTCTTTTGCACAGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAA
* * * * * *
3560029 TAAGACACGAATCAATTCTCGTAATAGTCTCTATTCCTTTCAAGACTGGGAAGCCAAAACACATT
196 TAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAATCACATT
* * * *
3560094 CCCTTCATTAGG-TCACATGGCTTTGATGCTTTGGGGTTGCAAGAAAAGCTTTTCTTTCTACCGT
261 CCCTTCATTAGGAT-ACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGT
* * * * *
3560158 TTTTGATAGAATCAAAGTTTTTCTTTTCTATAAGACAAACATGATTGCTCATACTAATCCCCATT
325 TTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATACTCATACTAATCCCCATT
* * * * * *
3560223 CTTTTCTAGATTAGGCACCATAAATATAGTCTTCTCAGTATGATACATGATATTGTTGCTTTAGT
390 CTTTTCTAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGT
** *
3560288 TTCACAAGAAAGGCTTTCTTCC
455 TTTGCAAGAAAGGCTTTTTTCC
* * **
3560310 CACCAA-TTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATGCTA-TAAACA-C
1 CACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTGATGATC
** * * * ** * *
3560372 ATTC-TCCTCA--TTAAGATAAATG-A-TATTAGTA-ATT-T--TC-TT---TTACATGGA-A--
66 -TTCAT--TCATTTTGTGAT-TAGGCACTATAAACACATTCTCCTCATTAGGATAAAT-GATATT
* ** ** * *** * * *
3560421 -AT-CTTTTC-TTTGC-CCTATTTCCCTTAAAATCAAGGCTC-A--TCCCTT-AAAT--AAG-AC
126 GATGATTTTCTTTTGCACAGAAAT--CTT---TTCTTTGCCCTATTTTCCTTAAAATCAAAGTTC
** *
3560475 A-AGC-T---T----CAA-------TTCTCGTAACAGTCTCCATTCCTTTCAAGACTAGGAAGCC
186 ATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCC
* * * * * * *
3560524 AAGTCACATTTCCTTTATTAGGATAAATTGCATTGAGGCTTTGGTGTCTCAAGAAAAGCTTTTCT
251 AAATCACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCT
* * *
3560589 TTCCACCGTTTTTGATAAAATCAAAGTTTGTCTCTTATATATGACAAACATGAATACTCAAACTA
316 TTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATACTCATACTA
* * *
3560654 ATCCCAATTCTTTT-TAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATTATATTA
381 ATCCCCATTCTTTTCTA-GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTG
* *
3560718 ATGCTTTGGATTTGCAAGAAATGCTTTTTTCC
445 ATGCTTTGGTTTTGCAAGAAAGGCTTTTTTCC
* * * *
3560750 TACCAATTTTT-AAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTGATGGTA
1 CACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTGATGATC
* * *
3560814 TTCATTCATTTTGTGATTAGGCATTAGAAACACATTCTCCTCATTAGGATAAATGATATTGGTGA
66 TTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGA
** * * *
3560879 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTGTCCTTAAAAACAAAGTTCATCCCATAAA
131 TTTTCTTTTGCACAGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAA
* * *
3560944 TAAGACAAGCATCGATTCTCGTAACAATCTCCATTCCTCTCAGGACTGGGAAGCCAAATCACATT
196 TAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAATCACATT
* * * * * * *
3561009 TCCTTCAGTAGGATAAATAGCATTGATGCTTTCGTGTCGCAA-AAAGGCTCTTT-TTTCCACTGT
261 CCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCT-TTTCTTTCCACCGT
* * *
3561072 TTTGGATGGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATACTCATACTAATCCCTATT
325 TTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATACTCATACTAATCCCCATT
* * ** *
3561137 CTTTTCTAGATTAGGAACCATAAACGTAGTCTTCTCATTAGGATACAAGATATTGATGTTTTGGT
390 CTTTTCTAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGT
* * *
3561202 TTTGTAAGAGAGGC-ATTTTCC
455 TTTGCAAGAAAGGCTTTTTTCC
* * * *
3561223 CACCAATTTTTGTACAGTCTAAGTTTGTGCCTCAAATGAGATAAACTTGGAATCTAGTGATGATC
1 CACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTGATGATC
* * ** *
3561288 TCCATTCATTCTACGATTAGGCACTATAAATACATTCTCCTCATTAGGATAAATGATATTGATG-
66 TTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGA
* ** * **
3561352 TTTTTTTTTAAACTGAAATCTTTTCTTTTTCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAA
131 TTTTCTTTTGCACAGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAA
* * * * *
3561417 TAAGACAAGCATCGATTCTTGTAATAGTCTCCGTTCCTTTCGAGACTGGGAAGCCAAAACACATT
196 TAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAATCACATT
* *
3561482 CCCTTCATTAGGATGCATGGCATTGATGATTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTT
261 CCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTT
** * * * ** * *
3561547 TTAAAAAAGAATCAAAGTTTGTCTTTTAAATAAGACAAATGTAAATATTCATACTAATCCCCATT
326 TT-TGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATACTCATACTAATCCCCATT
* * * * *
3561612 CTCTT-TAGCATTAGGCAACATAAACATAGTCTTCTCTTTAGGATACATCATATTAATGCTTTGA
390 CTTTTCTAG-ATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGG
* **
3561676 ATTCACAAGAAAGGCTTTTTTCC
454 TTTTGCAAGAAAGGCTTTTTTCC
* * * *
3561699 CACCAATTTTTGTAAAGTC-AAGTTCGTGCCTCAAATTAGAAAAACATAGATTCTAGTGATGATC
1 CACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTGATGATC
*
3561763 TTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATTTTGATGA
66 TTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGA
****
3561828 TTTTCTTTTATTTAGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAA
131 TTTTCTTTTGCACAGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAA
* * *
3561893 TAAGACAAGCATCGATTCTCATAACAGTCTCCATTCCTTTTAAGACTGGGAATCCAAATCACATT
196 TAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAATCACATT
* * * * *
3561958 CCCTTCATTAAGATACATGGCATTGATGCTTTGGTGTCGCATGAAAAGCTTTTTTTTCTACCATT
261 CCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTT
* * * * *
3562023 TTTGATAGAATCAAAGTTTGTCTCTTGTACAAGATAAACTTGAATACTCATACTAATCCCCATTT
326 TTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATACTCATACTAATCCCCATTC
* * * * *
3562088 TTTTC-AGGATTAGGCATCGTAAACAGAGTCTTCTCCTTAGGATACATCTTATTGATGCTTTGGT
391 TTTTCTA-GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGT
3562152 TTTGCAAGAAAGGCTTTTTTCC
455 TTTGCAAGAAAGGCTTTTTTCC
* * * * *
3562174 AACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATTAGACAAACATTGATTCTAGTAATGATC
1 CACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTGATGATC
* * * ** * *
3562239 TTCATTCACTTTGTGATTAAGCACTATACACGTATTCTCCTCATTTTGG-TAATTGATATTGATG
66 TTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCA-TTAGGATAAATGATATTGATG
3562303 ATTT
130 ATTT
3562307 GGTGTCGCAA
Statistics
Matches: 2065, Mismatches: 333, Indels: 151
0.81 0.13 0.06
Matches are distributed among these distances:
439 2 0.00
440 275 0.13
441 12 0.01
442 7 0.00
443 4 0.00
444 3 0.00
445 1 0.00
447 4 0.00
448 2 0.00
450 2 0.00
451 6 0.00
452 5 0.00
453 1 0.00
454 2 0.00
455 13 0.01
456 10 0.00
457 5 0.00
458 6 0.00
459 11 0.01
460 14 0.01
461 3 0.00
462 1 0.00
463 6 0.00
464 6 0.00
465 2 0.00
467 1 0.00
468 4 0.00
470 1 0.00
471 3 0.00
472 6 0.00
473 173 0.08
474 272 0.13
475 768 0.37
476 314 0.15
477 120 0.06
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (476 bp):
CACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTGATGATC
TTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGA
TTTTCTTTTGCACAGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAA
TAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAATCACATT
CCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTT
TTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATACTCATACTAATCCCCATTC
TTTTCTAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTT
TTGCAAGAAAGGCTTTTTTCC
Found at i:3562552 original size:312 final size:316
Alignment explanation
Indices: 3561979--3562576 Score: 796
Period size: 312 Copynumber: 1.9 Consensus size: 316
3561969 GATACATGGC
* * ** * *
3561979 ATTGATGCTTTGGTGTCGCATGAAAAGCTTTTTTTTCTACCATTTTTGATAGAATCAAAGTTTGT
1 ATTGATGATTTGGTGTCGCAAGAAAAGCTTTTCCTTCCACCACTTTTGATAGAATCAAAGTTTGT
* * * ** * * *
3562044 CTCTTGTACAAGATAAACTTGAATACTCATACTAATCCCCATTTTTTTCAGGATTAGGCATCGTA
66 CTCTTATACAAGACAAACATGAATACT-ATACTAATCCCCATTCCTTTCAGCATTAGGCACCATA
* * * * *
3562109 AACAGAGTCTTCTCCTTAGGATACATCTTATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTTTCC
130 AACAGAGTCTTCTCCTTAGGATACATCATATTGATGCTTTAGATTCGCAAGAAAGCCTTTTTTCC
*
3562174 AACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATTAGACAAACATTGATTCTAGTAATGATC
195 AACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGATC
3562239 TTCATTCACTTTGTGATTAAGCACTATACACGTATTCTCCTCATTTTGGTAATTGAT
260 TTCATTCACTTTGTGATTAAGCACTATACACGTATTCTCCTCATTTTGGTAATTGAT
*
3562296 ATTGATGATTTGGTGTCGCAAGAAAAGCTTTTCCTTCCACCGCTTTTGATAGAATCAAAGTTTGT
1 ATTGATGATTTGGTGTCGCAAGAAAAGCTTTTCCTTCCACCACTTTTGATAGAATCAAAGTTTGT
* *
3562361 CTGTTATATAAGACAAACATG-A-A-T-TACTAATCCCCATTCCTTTCAGCATTAGGCACCATAA
66 CTCTTATACAAGACAAACATGAATACTATACTAATCCCCATTCCTTTCAGCATTAGGCACCATAA
* * ** * *
3562422 ATATAGTCTTCTTGTTAGGATACATCATATTGATGCTTTAGATTCGCTAGAAAGCCTTTTTTCCT
131 ACAGAGTCTTCTCCTTAGGATACATCATATTGATGCTTTAGATTCGCAAGAAAGCCTTTTTTCCA
* **
3562487 ACCAATTTTTG-AAAGGTCTAAGTTTC-TGCCTCAAATGAGATAAACA-TGAATTCTAGTGGTGA
196 ACCAATTTTTGTAAA-GTCTAAG-TTCGTGCCTCAAATGAGACAAACATTG-ATTCTAGTAATGA
* * *
3562549 TCTTCATTTATTTTGTGATTAGGCACTA
258 TCTTCATTCACTTTGTGATTAAGCACTA
3562577 GAAACACATT
Statistics
Matches: 243, Mismatches: 35, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
311 5 0.02
312 158 0.65
313 3 0.01
314 1 0.00
315 1 0.00
316 1 0.00
317 74 0.30
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (316 bp):
ATTGATGATTTGGTGTCGCAAGAAAAGCTTTTCCTTCCACCACTTTTGATAGAATCAAAGTTTGT
CTCTTATACAAGACAAACATGAATACTATACTAATCCCCATTCCTTTCAGCATTAGGCACCATAA
ACAGAGTCTTCTCCTTAGGATACATCATATTGATGCTTTAGATTCGCAAGAAAGCCTTTTTTCCA
ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGATCT
TCATTCACTTTGTGATTAAGCACTATACACGTATTCTCCTCATTTTGGTAATTGAT
Found at i:3562772 original size:788 final size:789
Alignment explanation
Indices: 3561503--3563092 Score: 2175
Period size: 788 Copynumber: 2.0 Consensus size: 789
3561493 GATGCATGGC
*
3561503 ATTGATGATTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTAAAAAAGAATCAAAGTTTG
1 ATTGATGATTTGGTGTCGCAAGAAAAGCTTTTCCTTCCACCGTTTT-AAAAAGAATCAAAGTTTG
* **
3561568 TCTTTTAAATAAGACAAATGTAAATATTCATACTAATCCCCATTCTCTTTAGCATTAGGCAACAT
65 TCTGTTAAATAAGACAAACATAAATATT-ATACTAATCCCCATTCTCTTTAGCATTAGGCAACAT
*
3561633 AAACATAGTCTTCTCTTTAGGATACATCATATTAATGCTTTGAATTCACAAGAAAGGCTTTTTTC
129 AAACATAGTCTTCTCTTTAGGATACATCATATTAATGCTTTGAATTCACAAGAAAGCCTTTTTTC
*
3561698 CCACCAATTTTTGTAAAGTCAAGTTCGTGCCTCAAATTAGAAAAACATAGATTCTAGTGATGATC
194 CCACCAATTTTTGTAAAGTCAAGTTCGTGCCTCAAATGAGAAAAACATAGATTCTAGTGATGATC
* ** *
3561763 TTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATTTTGATGA
259 TTCATTCATTTTGTGATTAGGCACTAGAAACACATTCTCCTCAAAAGGATAAATGATATTGATGA
* * *
3561828 TTTTCTTTTATTTAGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAA
324 TTTTCTTTTACTTAGAAATCTTTTATTTGCCCTACTTTCCTTAAAATCAAAGTTCATCCCTTAAA
* * * *
3561893 TAAGACAAGCATCGATTCTCATAACAGTCTCCATTCCTTTTAAGACTGGGAATCCAAATCACATT
389 TAAGACAAGCATCGATTCTCATAACAGTCTCCACTCCTTTCAAGACTGGGAAGCCAAAACACATT
* * * * * *
3561958 CCCTTCATTAAGATACATGGCATTGATGCTTTGGTGTCGCATGAAAAGCTTTTTTTTCTACCATT
454 CCCTTCATTAAGAAACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATT
* * * * * *
3562023 TTTGATAGAATCAAAGTTTGTCTCTTGTACAAGATAAACTTGAATACTCATACTAATCCCCATTT
519 TTTGATAGAATCAAAGTTTGTCCCTTATACAAGACAAACATGAATACTCATACAAATCCCCATTC
* * *
3562088 TTTTCAGGATTAGGCA-TCGTAAACAG-AGTCTTCTCCTTAGGATACATC-TTATTGATGCTTTG
584 TTTTCAGGATTAGGCACT-ATAAAC-GTAGTCTTCTCATTAGGATACA-CGATATTGATGCTTTG
* * *
3562150 GTTTTGCAAGAAAGGCTTTTTTCCAACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATTAGA
646 GTTTTGCAAGAAACGC-ATTTTCCAACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGA
* * * * ** **
3562215 CAAACATTGATTCTAGTAATGATCTTCATTCACTTTGTGATTAAGCACTATACACGTATTCTCCT
710 CAAACATGGATTCTAGTAAAGATCTTCATT-ACTTTATGATTAAGCACTATAAACACATTCTCAA
* *
3562280 CATTTTGG-TAATTGAT
774 CA-TTAGGATAAATGAT
* *
3562296 ATTGATGATTTGGTGTCGCAAGAAAAGCTTTTCCTTCCACCGCTTTT-GATAGAATCAAAGTTTG
1 ATTGATGATTTGGTGTCGCAAGAAAAGCTTTTCCTTCCACCG-TTTTAAAAAGAATCAAAGTTTG
* * *
3562360 TCTGTTATATAAGACAAACAT-GA-A-T-TACTAATCCCCATTC-CTTTCAGCATTAGGCACCAT
65 TCTGTTAAATAAGACAAACATAAATATTATACTAATCCCCATTCTCTTT-AGCATTAGGCAACAT
* * * *
3562420 AAATATAGTCTTCT-TGTTAGGATACATCATATTGATGCTTT-AGATTCGCTAGAAAGCCTTTTT
129 AAACATAGTCTTCTCT-TTAGGATACATCATATTAATGCTTTGA-ATTCACAAGAAAGCCTTTTT
* *
3562483 TCCTACCAATTTTTG-AAAGGTCTAAGTTTC-TGCCTCAAATGAGATAAACAT-GAATTCTAGTG
192 TCCCACCAATTTTTGTAAA-GTC-AAG-TTCGTGCCTCAAATGAGAAAAACATAG-ATTCTAGTG
* *
3562545 GTGATCTTCATTTATTTTGTGATTAGGCACTAGAAACACATTCTCCTCAAAAGGATAAATGATAT
253 ATGATCTTCATTCATTTTGTGATTAGGCACTAGAAACACATTCTCCTCAAAAGGATAAATGATAT
* * *
3562610 TGATGATTTTCTTTTGCTTGGATATCTTTTATTTGCCCTACTTTCCTTAAAATCAAAGTTCATCC
318 TGATGATTTTCTTTTACTTAGAAATCTTTTATTTGCCCTACTTTCCTTAAAATCAAAGTTCATCC
*** * * *
3562675 CTTAAATAAGATGCGCATCGATTCTCGTCACAGTCTCCACTGCTTTCAAGACTGGGAAGCCAAAA
383 CTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCACTCCTTTCAAGACTGGGAAGCCAAAA
* * *
3562740 CACATTCCCTTCGTTAGGAAACACGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCC
448 CACATTCCCTTCATTAAGAAACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC
* * * *
3562805 GCTATTTTTGATTGAATCAAAGTTTGTCCCTTATATAAGACAAACATGAATACTCATACAAATCC
513 ACCATTTTTGATAGAATCAAAGTTTGTCCCTTATACAAGACAAACATGAATACTCATACAAATCC
** * *
3562870 CCATTCTTTTCTTGATTAGGCACTATAAACGTAGTCTTCTCATTGGGATACACGATATTGATGTT
578 CCATTCTTTTCAGGATTAGGCACTATAAACGTAGTCTTCTCATTAGGATACACGATATTGATGCT
* *
3562935 TTGGTTTTGCAAGAAACGCATTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGA
643 TTGGTTTTGCAAGAAACGCATTTTCCAACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGA
* * * *
3563000 GACAACCATGGATTCTAGTAAAGATCTTTATTATTTTATGATTAGGCACTATAAACACATTCTCA
708 GACAAACATGGATTCTAGTAAAGATCTTCATTACTTTATGATTAAGCACTATAAACACATTCTCA
3563065 ACATTAGGATAAATGAT
773 ACATTAGGATAAATGAT
3563082 ATTGATGATTT
1 ATTGATGATTT
3563093 TCTTTTACAT
Statistics
Matches: 701, Mismatches: 84, Indels: 31
0.86 0.10 0.04
Matches are distributed among these distances:
785 4 0.01
786 55 0.08
787 173 0.25
788 385 0.55
789 5 0.01
790 1 0.00
791 1 0.00
792 32 0.05
793 41 0.06
794 4 0.01
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (789 bp):
ATTGATGATTTGGTGTCGCAAGAAAAGCTTTTCCTTCCACCGTTTTAAAAAGAATCAAAGTTTGT
CTGTTAAATAAGACAAACATAAATATTATACTAATCCCCATTCTCTTTAGCATTAGGCAACATAA
ACATAGTCTTCTCTTTAGGATACATCATATTAATGCTTTGAATTCACAAGAAAGCCTTTTTTCCC
ACCAATTTTTGTAAAGTCAAGTTCGTGCCTCAAATGAGAAAAACATAGATTCTAGTGATGATCTT
CATTCATTTTGTGATTAGGCACTAGAAACACATTCTCCTCAAAAGGATAAATGATATTGATGATT
TTCTTTTACTTAGAAATCTTTTATTTGCCCTACTTTCCTTAAAATCAAAGTTCATCCCTTAAATA
AGACAAGCATCGATTCTCATAACAGTCTCCACTCCTTTCAAGACTGGGAAGCCAAAACACATTCC
CTTCATTAAGAAACACGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
TGATAGAATCAAAGTTTGTCCCTTATACAAGACAAACATGAATACTCATACAAATCCCCATTCTT
TTCAGGATTAGGCACTATAAACGTAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTT
GCAAGAAACGCATTTTCCAACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACA
TGGATTCTAGTAAAGATCTTCATTACTTTATGATTAAGCACTATAAACACATTCTCAACATTAGG
ATAAATGAT
Found at i:3563692 original size:159 final size:158
Alignment explanation
Indices: 3562578--3568475 Score: 857
Period size: 159 Copynumber: 37.2 Consensus size: 158
3562568 TAGGCACTAG
* ** * * * * * * *
3562578 AAACACATTCTCCTCAAAAGGATAAATGATATTGATGATTTTCTTTTGCTTGGATATCTTTTATT
1 AAACACATTCTCTTCATTAGGATAAATGATATTGATGATTTTGTTTTACATAGAAAGCTTTTCTT
** ****
3562643 TGCCCTACTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGATGCGCATCGATTCTCGTC-ACA
66 TGCCCTA-TTTTTTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCG-CAACA
* * * *
3562707 GTCTCCACTGCTTTCAAGACTGGGAAGCCA-
129 GTCTCCATTCCTTTTAAGACTAGGAA-CCAT
* * * * * * * *
3562737 AAACACATTCCCTTCGTTAGGA-AACACGACATTGATGCTTTGGTGTTGCA-AGAAAAGCTTTTC
1 AAACACATTCTCTTCATTAGGATAA-ATGATATTGATGATTTTGTTTTACATAG-AAAGCTTTTC
* ** * *
3562800 TTT-CCGCTATTTTTGATT-GAATCAAAGTTTGTCCCTTATATAAGACAAACAT-GAATACT--C
64 TTTGCC-CTATTTTT--TTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATTCTCGC
* * ** * * *
3562860 ATACAAATCCCCATT-CTTTTCTTGATTAGGCACTAT
125 A-AC-AGTCTCCATTCCTTTT-AAGACTAGGAACCAT
** * * * * *
3562896 AAACGTAGTCT-TCTCATTGGGATACACGATATTGATG-TTTTGGTTTTGCA-AGAAACGCATTT
1 AAACACATTCTCT-TCATTAGGATAAATGATATTGATGATTTT-GTTTTACATAGAAA-GC-TTT
* * * * * ** * * * * * * *
3562958 TC---CCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAACCATGGATTCTAGTA
62 TCTTTGC-CCTATTTTTTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCGCA
** * * * * *
3563020 A-AGATCTTTATT-ATTTTATGATTAGGCACTAT
126 ACAG-TCTCCATTCCTTTTAAGACTAGGAACCAT
** * * *
3563052 AAACACATTCTCAACATTAGGATAAATGATATTGATGATTTTCTTTTACATGGAAATCTTTTCTT
1 AAACACATTCTCTTCATTAGGATAAATGATATTGATGATTTTGTTTTACATAGAAAGCTTTTCTT
* * * ** *
3563117 TGCCCTATTTTCCTTAAAATCAAAGCTCATCCCTTAAATAAGAGATGCATCGATTCTCGTAACAG
66 TGCCCTATTTT-TTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCGCAACAG
* * *
3563182 TCTCCATTCCTTTCAAGTCTGGGAAGCCA-
130 TCTCCATTCCTTTTAAGACTAGGAA-CCAT
* ** * * * *
3563211 AAACACATTC-CTTTCATTAGGATACATGGCATTGATGCA-TTGGTGTCACA-AGTAACGCTTTT
1 AAACACATTCTC-TTCATTAGGATAAATGATATTGATG-ATTTTGTTTTACATAG-AAAGCTTTT
* ** * ** * * * ** *
3563273 CTTTCCACCGT-TTTTGATAGAATCAAAGTTTGTCTCTTATATTAGACAAACATTAATACT--CA
63 CTTTGC-CC-TATTTTTTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCGCA
* ** * *
3563335 TACAAATCTCCATTTTTTTTAGGATTAGGCAA-CAT
126 -AC-AGTCTCCATTCCTTTTAAGACTAGG-AACCAT
* * * *
3563370 AAACATATTCT-TGTCATTAGGATACATGATATTGATG-CTTTGGTTT-CATAAGAAAGGCTTTT
1 AAACACATTCTCT-TCATTAGGATAAATGATATTGATGATTTTGTTTTACAT-AGAAA-GCTTTT
** * * * * ** * * * * * **
3563432 -TTCTAACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTGA
63 CTT-TGCCCTATTTTTTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCGCAA
* * * ** * * *
3563496 -TGATCTTCATTCATTTTGCGATTAGGCACTAT
127 CAG-TCTCCATTCCTTTTAAGACTAGGAACCAT
* * * *
3563528 AAACACAATCTCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGCATAGAAATCTTTTCTT
1 AAACACATTCTCTTCATTAGGATAAATGATATTGATGATTTTGTTTTACATAGAAAGCTTTTCTT
* *
3563593 TGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTTAAATAAGACAATCGTCGATTCTCGCAACAG
66 TGCCCTATTTT-TTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCGCAACAG
3563658 TCTCCATTCCTTTTAAGACTAGGAAGCCA-
130 TCTCCATTCCTTTTAAGACTAGGAA-CCAT
* ** * * * **
3563687 AAACACATTCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCA-AGAAAAGCTTTTCT
1 AAACACATTCTCTTCATTAGGATAAATGATATTGATGATTTTGTTTTACATAG-AAAGCTTTTCT
* * ** * * * * **
3563751 TTCCACCT-TTTTTGATT-GAATCAAAGTTTGTCTCTTATACAAGACAAACAT-GAATACTCATA
65 TTGC-CCTATTTTT--TTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATTCTCGCA
* ** * *
3563813 GA-AATCTCCATT-CTTTTCTTGATTAGGCACCAT
126 -ACAGTCTCCATTCCTTTT-AAGACTAGGAACCAT
* * * *
3563846 AAAC-C-TGGTCTTCTT-ATTAGGATACACGATATTGATG-TTTTGGTTTTGCA-GGAAAGGCAT
1 AAACACAT--TC-TCTTCATTAGGATAAATGATATTGATGATTTT-GTTTTACATAGAAA-GC-T
* * * * * ** ** * ** * *
3563906 TTTC---CCACCAATTTTTGTAAAGTCTAAGTTTGTGTCTCAAATGTGACAAACATGGATTCTAG
60 TTTCTTTGC-CCTATTTTTTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCG
** * ** * * * ** *
3563968 TGA-TGATCTTAATTCATTTCATA-ATTAGGCTCCAG
124 CAACAG-TCTCCATTCCTTTTA-AGACTAGGAACCAT
* * * * * *
3564003 AAACACATTCTCCTCAATAGGATAAATGGTATTGATGATTTTCTTTTACAT-GAAAATCTTTTGT
1 AAACACATTCTCTTCATTAGGATAAATGATATTGATGATTTTGTTTTACATAG-AAAGCTTTTCT
* * **
3564067 TTGCTCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACACGCATCGATTCTCGCAACA
65 TTGCCCTATTTT-TTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCGCAACA
* * *
3564132 GTCTCCATTCCTTTCATGACTGGGAAGCCA-
129 GTCTCCATTCCTTTTAAGACTAGGAA-CCAT
* * * ** * * * ** *
3564162 AATCAAATTC-CGTTCATTAGGATATATGGCATTGATGCTTTGGTGTCGCA-AGAAAGGCTTTCC
1 AAACACATTCTC-TTCATTAGGATAAATGATATTGATGATTTTGTTTTACATAGAAA-GCTTTTC
* * * * ** * * *
3564225 TTT-CCATCATTTTTGATAGAATGAAAGTTTGTCTCTTATATAAGACAAACAT-GAATACAT-G-
64 TTTGCCCT-ATTTTT-TTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATTC-TCGC
* * * ** * *
3564286 ATACAAATCCCCGTT-CTTTTCTTGATTAGGCACCAT
125 A-AC-AGTCTCCATTCCTTTT-AAGACTAGGAACCAT
* * * * * * * * *
3564322 AAACATAGTCT-TCTGATTAGGGTAGACGATATTGACG-TTTTAGTTATGCA-AGAAAGGCATTT
1 AAACACATTCTCT-TCATTAGGATAAATGATATTGATGATTTT-GTTTTACATAGAAA-GC-TTT
* * * * * * * * * * **
3564384 TC---GCACCAATTTTTGTAAAGTCTAAGTTTATGCCTCAAATGAGACAAACATAGATTCTAGTG
62 TCTTTGC-CCTATTTTTTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCGCA
* * * ** * * *
3564446 A-TGATCTTCATTCATTTTGTGATTAGGCACTAT
126 ACAG-TCTCCATTCCTTTTAAGACTAGGAACCAT
** * * * * * * * *
3564479 AAATGCGTACTCCTCTTTAGGATAAATGGTATTGATGATTTTCTTTTACATGGAAATCTTTTCTT
1 AAACACATTCTCTTCATTAGGATAAATGATATTGATGATTTTGTTTTACATAGAAAGCTTTTCTT
* * * ** **
3564544 TCCCCTATTTTCCTTAAAATCAAAGTTCATCCCATAAATAAGACACGCATCGATTCTCATAACAG
66 TGCCCTATTTT-TTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCGCAACAG
** * *
3564609 TCTCTGTTCCTTTCAAGA-TGGGAAGCCA-
130 TCTCCATTCCTTTTAAGACTAGGAA-CCAT
* ** * ** *
3564637 AAACACATTC-CATTCATTAGGATACATGGCATTGAT-ACTTTGGTGCTGCA-AGAAAAGCTTTT
1 AAACACATTCTC-TTCATTAGGATAAATGATATTGATGA-TTTTGTTTTACATAG-AAAGCTTTT
* * * ** * * * * *
3564699 CTTT-CCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAATAT-TACTACTCAT
63 CTTTGCC-CTATTTTT-TTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGA-TTCTC--
* ** * * *
3564762 GCAA-A-TCCCCATTTTTTTTAGGATTAGGCACCAT
123 GCAACAGTCTCCATTCCTTTTAAGACTAGGAACCAT
* * * ** * ** * *
3564796 AGACATAATCT-TCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCA-AGAAAGGTTTTTT
1 AAACACATTCTCT-TCATTAGGATAAATGATATTGATGATTTTGTTTTACATAGAAAGCTTTTCT
* * * * * * ** * * * * * **
3564859 TTCCCACCAATTATTGTAAAGTCTAAGTTTGTACCTCAAATGAGACAAACATTGATTCTAGTGA-
65 TT-GC-CCTATTTTTTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCGCAAC
* * * ** * * *
3564923 TGATCTTCATTCATTTTTTGATTAGGCACTAT
128 AG-TCTCCATTCCTTTTAAGACTAGGAACCAT
* * * * *
3564955 AAACACATTCTCTTCATTAGGATAAATGGTATTGATGATTTTTTTTTCGCATGGAAATCTTTTCT
1 AAACACATTCTCTTCATTAGGATAAATGATATTGATGATTTTGTTTT-ACATAGAAAGCTTTTCT
* * * * **
3565020 TTGCCCTATTTTTTTGAAAATCAAAGTTCATCTCTTAAATAAGACAAGCGTTGATTCT-TTAACA
65 TTGCCCTATTTTTTT-AAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCGCAACA
* * * *
3565084 GTCTCTATTCCTTTCAAGATTGGGAAGCCA-
129 GTCTCCATTCCTTTTAAGACTAGGAA-CCAT
* * * * ** * * * **
3565114 AAACACATTCTCTTCATTAAGCTACACGGCATTGATGCTTTGGTGTCGCA-AGAAAAGCTTTTCT
1 AAACACATTCTCTTCATTAGGATAAATGATATTGATGATTTTGTTTTACATAG-AAAGCTTTTCT
* ** * * * * *
3565178 TT---CTTTTGTTTTTGATAGAATCAAAGTTTGTCTCGTATATAAGACAAACAT-GAATAT-GCA
65 TTGCCCTATT-TTTTT-A-A-AATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCGCA
* ** *
3565238 TACAAATC-CCTATT-CTTTTCTTGATTAGGCAA-CAT
126 -AC-AGTCTCC-ATTCCTTTT-AAGACTAGG-AACCAT
* * * * * * * * **
3565273 -AACATAGTCT-TCTCATTGGGATACATTATATTGATGCTTTGGATTTGGA-AGAAATGCTTTT-
1 AAACACATTCTCT-TCATTAGGATAAATGATATTGATGATTTTGTTTTACATAGAAA-GCTTTTC
* * * * * ** * * * * * **
3565334 TTCCT-ACCGATTTTTATAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTGA
64 TT--TGCCCTATTTTTTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCGCAA
* * * ** * * ** *
3565398 -TGATCTTCATTCATTTTGTGATTAGGCATTAG
127 CAG-TCTCCATTCCTTTTAAGACTAGGAACCAT
* * * * * * * *
3565430 AAACACATTCTCTTCAATAAGATAAATGATATTGATAATTTTTTTTTGCA-CGAAAATCTTATCT
1 AAACACATTCTCTTCATTAGGATAAATGATATTGATGATTTTGTTTTACATAG-AAAGCTTTTCT
* * ** *
3565494 TTGCCTTATTTTCTTTAAAATCAAAAG-TCATCTCTTAAATAAGACAGGCATCGATTCTCGTAAC
65 TTGCCCTATTTT-TTTAAAATC-AAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCGCAAC
* * *
3565558 AGTCTCCATTCCTTTCAAGATTGGGAAGCCA-
128 AGTCTCCATTCCTTTTAAGACTAGGAA-CCAT
* ** * * * * * *
3565589 AAACACATTCCCTTCATTAGGATACACGGCT-TTGATGCTTTGGTGTTGCA-AGAAAAGCTTTCC
1 AAACACATTCTCTTCATTAGGATA-AATGATATTGATGATTTTGTTTTACATAG-AAAGCTTTTC
** * * * * * ** *
3565652 TTT-CTATCATTTTTTATAGAATCAAAGTAT-GTCTCC-TATATTAGAGAAACATTAATGCTCAT
64 TTTGCCCT-ATTTTTT-TAAAATCAAAGT-TCATC-CCTTAAATAAGACAAACATCGATTCTC--
* * * *
3565714 GCAA-A-TCCCCATT-TTTTTCAGGAGC-AGGCGA-CAT
123 GCAACAGTCTCCATTCCTTTT-AAGA-CTAGG-AACCAT
* * * * * * * * *
3565748 AAACATATTCTCGTCATTAAGATACACGATATTGATGCTTTGGTTTTGCA-AAAAAGGC-TTTC-
1 AAACACATTCTCTTCATTAGGATAAATGATATTGATGATTTTGTTTTACATAGAAA-GCTTTTCT
* * * * * ** * * * * * * **
3565810 TTCCCACCAATTTTTGAAAAGTCTAAGTTTGTGCCTCAAATGAGAAAAACATGGATTCT--TATG
65 TTGCC-CTATTTTTTTAAAA-TCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCGCAAC
* * ** * * *
3565873 ATGATCTTCATTCATTTTGTGATTAGGCACTAT
128 A-G-TCTCCATTCCTTTTAAGACTAGGAACCAT
* * * * *
3565906 AAACACAATCTCTTCATTAGGTTAAATGATATTGATGATTTT-TTTTGCATGGAAATCTTTTCTT
1 AAACACATTCTCTTCATTAGGATAAATGATATTGATGATTTTGTTTTACATAGAAAGCTTTTCTT
* * * * *
3565970 TG-CCTCATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCGTCGATTCTCGTAATA
66 TGCCCT-ATTTT-TTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCGCAACA
* *
3566034 GTCTCCATTCCTTTCAAGACTGGGAAGCCA-
129 GTCTCCATTCCTTTTAAGACTAGGAA-CCAT
* * * * ** * * * **
3566064 AAACACGTTCTCCTCATTAAGATACATGGCATTGATGCTTTGGTGTGGCA-AGTAAAGCTTTTCT
1 AAACACATTCTCTTCATTAGGATAAATGATATTGATGATTTTGTTTTACATAG-AAAGCTTTTCT
* * ** * * ** * * * * *
3566128 TTCCACCAATTTTGATAGAGTCAAAGTTTGTCTCTTATACAAGACAAAC-TTGAATACT--CATA
65 TTGC-CCTATTTTTTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATTCTCGCA-A
* * * *
3566190 CTAATCTCCATT-TTTTTCAAGAGTAGGCACCAT
127 C-AGTCTCCATTCCTTTT-AAGACTAGGAACCAT
* ** * * * * * **
3566223 AAACATAGCCT-TCTCCTTAGGATACATCATATTGATGCTTTGGTTTTGTA-AGAAAGGCATTTT
1 AAACACATTCTCT-TCATTAGGATAAATGATATTGATGATTTTGTTTTACATAGAAA-GC-TTTT
* * * * * * ** * * * * * * **
3566286 C---CCACCAATTTTTGTAAAGTCTATGTTTGTGCCTCAAATGAGACAAGCATGGATTCTGGTGA
63 CTTTGC-CCTATTTTTTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCGCAA
* * * ** * * * *
3566348 -TGATCTTCATTCATTTTGTGATTAGGCACTAC
127 CAG-TCTCCATTCCTTTTAAGACTAGGAACCAT
* * * * * * * * * * *
3566380 AAGCACATTATCCTT-AATAGAATAAATGATACTGATGATTTTCTTTTGCATTGAAATCTTATCC
1 AAACACATTCT-CTTCATTAGGATAAATGATATTGATGATTTTGTTTTACATAGAAAGCTTTTCT
* ** ** *
3566444 TTGCCCTATTTTCCTTAAAATCAAAGTTCATCATTTAAATAAGACACGCATCGATTCTCGTAACA
65 TTGCCCTATTTT-TTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCGCAACA
* *
3566509 GTCTCCATTCCTTTCAAGACTGGGAAGCCA-
129 GTCTCCATTCCTTTTAAGACTAGGAA-CCAT
* * * * * * * **
3566539 AAACACATTCCCTTCATTAGGACACATGGCT-TTGATGCTTTGGTGTCGCA-AGAAAAGCTTTTC
1 AAACACATTCTCTTCATTAGGATAAAT-GATATTGATGATTTTGTTTTACATAG-AAAGCTTTTC
* ** * * ** ** ** *
3566602 TTTCCACCGT-TTTTGATACAATCAATGTTTTTCTTTTCTATAAGACAAACAT-GAATACT--CA
64 TTTGC-CC-TATTTTTTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATTCTCGCA
* * * * *
3566663 TACTAATC-CCATT-CTTTTCTAGATTAGGCACCCT
126 -AC-AGTCTCCATTCCTTTT-AAGACTAGGAACCAT
* * * * * * * * **
3566697 AAATATAGTCT-TCTCTTTAGGATACATGATATTGTTGCTTTAGTTTCGCA-AGAAATGC-TTTC
1 AAACACATTCTCT-TCATTAGGATAAATGATATTGATGATTTTGTTTTACATAGAAA-GCTTTTC
* * * ** * * * * * * *
3566759 -TT-CCCATCAATTTTTGTAAAGTCTAAGTTTGTACCTCAAATGAGACAAACATGGATGCTAG-T
64 TTTGCCC-T--ATTTTTTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCGCA
*** * * * ** * * *
3566821 GGTGATCTTCTTTCATTTTGGGATTAGGTACTAT
126 ACAG-TCTCCATTCCTTTTAAGACTAGGAACCAT
* * * * *
3566855 AAACACATTCTCCTCATTAAGATAAAAT-ATATT-AGTAATTTTCTTTTACAT-GAAAATCTTTT
1 AAACACATTCTCTTCATTAGGAT-AAATGATATTGA-TGATTTTGTTTTACATAG-AAAGCTTTT
* * * ** *
3566917 CTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCCCTTAAATAAGACAAGCATTAATTCTCGTAA
63 CTTTGCCCTATTTT-TTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCGCAA
*
3566982 CAGTCTCCATTCCTTTCAAGACTAGGAAGCCA-
127 CAGTCTCCATTCCTTTTAAGACTAGGAA-CCAT
* * * * * *
3567014 AATCACATT-TGC-TCTATTAGGATAAATTG-CATTGAGGCTTTGGTGTCT-CA-AGAAAAGCTT
1 AAACACATTCT-CTTC-ATTAGGATAAA-TGATATTGATGATTTTGT-TTTACATAG-AAAGCTT
* ** * ** * * * * *
3567074 TTCTTTCCACCGT-TTTTGATAGAATCAAAGTTTGTCTCTCAGATAAAACAAACAT-GAATACTC
61 TTCTTTGC-CC-TATTTTTTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATTCTC
* * * *
3567137 G-TACTAATCCCCATT-CTTTTATAGATTAGGAACCAT
123 GCAAC-AGTCTCCATTCCTTTTA-AGACTAGGAACCAT
* * * ** *
3567173 AAACATAGTCT-TCTCATTAGGATATAA-GATATTGA-GGTTTTGGTTTTGTA-AGAGAGGCATT
1 AAACACATTCTCT-TCATTAGGATA-AATGATATTGATGATTTT-GTTTTACATAGA-AAGC-TT
* * ** * * * * * * *
3567234 TTC----CCACTAATTTTTGTAAAGTCTAAA-TTTGTGCCTCAAATGAGACTAACATGGTTTCTA
61 TTCTTTGCC-CT-ATTTTTTTAAAATC-AAAGTTCATCCCTTAAATAAGACAAACATCGATTCTC
** * * * ** * * ** *
3567294 GTGA-TGATCTTCATTCATTTTGTGATTAGGCAGTAG
123 GCAACAG-TCTCCATTCCTTTTAAGACTAGGAACCAT
** * * * * *
3567330 AAACACATTCTCCGCATTAGGATAAATGATATTGGTGATTTTCTTTTGCATGGAAATCTTTTCTT
1 AAACACATTCTCTTCATTAGGATAAATGATATTGATGATTTTGTTTTACATAGAAAGCTTTTCTT
* ** * * * *
3567395 TGCCCGATTGTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATTGATTCTTGTAACAG
66 TGCCCTATT-TTTTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCGCAACAG
* * *
3567460 TCTCCATTTCTTTCAAGACTGGGAAGCCA-
130 TCTCCATTCCTTTTAAGACTAGGAA-CCAT
* * *** * * * * * *
3567489 AATCACATT-TCCTTCACTAGGATAAATGGCGTTGATGCTTTGGTGTCACAAAAAAAGCTTTT-T
1 AAACACATTCT-CTTCATTAGGATAAATGATATTGATGATTTTGTTTTACATAGAAAGCTTTTCT
*** ** ** * * * *
3567552 TCTGCACCGT-TTTGGATGGAATCAAAGTTTGTCTCTTATATAAGACAAACAT-GAATACTCG-T
65 T-TGC-CC-TATTTTTTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCG-ATTCTCGCA
* * * *
3567614 ACTAATCCCCATT--TTTTCTAGATTAGGAACCAT
126 AC-AGTCTCCATTCCTTTT-AAGACTAGGAACCAT
* * * * *
3567647 AAACATAGTCT-TCTCATTAGGATACATGATATTGATG-TTTTGGTTTTGTA-AAAG-AGGC-TT
1 AAACACATTCTCT-TCATTAGGATAAATGATATTGATGATTTT-G-TTT-TACATAGAAAGCTTT
** * * * * * ** * * * * * * **
3567707 T-TTCCCACCAAGTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACTTGGATTCTAGTG
62 TCTTTGC-CCTATTTTTTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCGCA
* * * * * *
3567771 A-TGATCTCCATTCATTTTATGATTAGGCACTAT
126 ACAG-TCTCCATTCCTTTTAAGACTAGGAACCAT
* * * * * *
3567804 AAATACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTAAATTGAAATCTTTTCTT
1 AAACACATTCTCTTCATTAGGATAAATGATATTGATGATTTTGTTTTACATAGAAAGCTTTTCTT
* * ** * *
3567869 TGCCCTCTTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGTATCGATTCTTGTAACAG
66 TGCCCTATTTT-TTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCGCAACAG
*
3567934 TCTCCATTCCTTTTGAGACT-GGTAAGCCA-
130 TCTCCATTCCTTTTAAGACTAGG-AA-CCAT
* ** ** * * * *
3567963 AAACACATTCCCTTCATTAGGATGCATGGCATTGATGATTTGGTGTCACA-AGAAAAGCTTTTAT
1 AAACACATTCTCTTCATTAGGATAAATGATATTGATGATTTTGTTTTACATAG-AAAGCTTTTCT
* *** ** * * * **
3568027 TT-CCATAGTTTTAAAAAAGAATCAAAGTTTGTCTCTTAAATAAGATAAATATAAATAT-T--CA
65 TTGCCCTA-TTTT-TTTAA-AATCAAAGTTCATCCCTTAAATAAGACAAACATCGAT-TCTCGCA
* * * * *
3568088 TACTAATCCCCATT-CTCTTCAGCATTAGGCAA-CAT
126 -AC-AGTCTCCATTCCTTTTAAG-ACTAGG-AACCAT
* * * ** * * * * * **
3568123 AAACATAGTCT-TCTCTTTAGGATACTTCATATTAATGCTTTGGATTCGCA-AGAAAGGC-TTT-
1 AAACACATTCTCT-TCATTAGGATAAATGATATTGATGATTTTGTTTTACATAGAAA-GCTTTTC
* * * * * * * * * * * *
3568184 TTTCCCACTAATTTCTGTAAAGTC-AAGTTCGTGCCTCAAATTAGAAAAACATAGATTCTAGTAA
64 TTTGCC-CT-ATTTTTTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCGCAA
* * * * * * *
3568248 -TGATCTTCATTCATTTTGTA-ATTAGGCACTAT
127 CAG-TCTCCATTCCTTTT-AAGACTAGGAACCAT
* * * * * * *
3568280 AAACACATTCTCCTCATTAGGATAAATGATTTTGATGATTTTCTTTTATATGGAAATCTTTTGTT
1 AAACACATTCTCTTCATTAGGATAAATGATATTGATGATTTTGTTTTACATAGAAAGCTTTTCTT
* * * * * *
3568345 TACTCTATTTTCCTTAAAATCAAAGTTCATCCCTAAAATAAGACAAGCATCGATTCTCGTAACAG
66 TGCCCTATTTT-TTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCGCAACAG
* *
3568410 TCTCCATTCCTTTCAAGACTGGGAAGCCA-
130 TCTCCATTCCTTTTAAGACTAGGAA-CCAT
* **
3568439 AAACAAATTCTCTTCATTAGGATAAATGGCATTGATG
1 AAACACATTCTCTTCATTAGGATAAATGATATTGATG
3568476 CTTTGGTGTC
Statistics
Matches: 4024, Mismatches: 1340, Indels: 750
0.66 0.22 0.12
Matches are distributed among these distances:
154 4 0.00
155 15 0.00
156 140 0.03
157 627 0.16
158 1021 0.25
159 1868 0.46
160 313 0.08
161 36 0.01
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.37
Consensus pattern (158 bp):
AAACACATTCTCTTCATTAGGATAAATGATATTGATGATTTTGTTTTACATAGAAAGCTTTTCTT
TGCCCTATTTTTTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCGCAACAGT
CTCCATTCCTTTTAAGACTAGGAACCAT
Found at i:3564160 original size:475 final size:475
Alignment explanation
Indices: 3562296--3568934 Score: 8608
Period size: 475 Copynumber: 14.0 Consensus size: 475
3562286 GGTAATTGAT
* * *
3562296 ATTGATGATTTGGTGTCGCAAGAAAAGCTTTTCCTTCCACCGCTTTTGATAGAATCAAAGTTTGT
1 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGT
* * *
3562361 CTGTTATATAAGACAAACATG-A-A-T--TACTAATCCCCATTCCTTTC-AGCATTAGGCACCAT
66 CTCTTATATAAGACAAACATGAATACTCATACAAATCCCCATTCTTTTCTAG-ATTAGGCACCAT
* ** * * * * *
3562420 AAATATAGTCTTCTTGTTAGGATACATC-ATATTGATGCTTTAGATTCGCTAGAAAGCCTTTTTT
130 AAACATAGTCTTCTCATTAGGATACA-CGATATTGATGCTTTGGTTTTGCAAGAAAGGC-TTTTT
* * * * *
3562484 CCTACCAATTTTTG-AAAGGTCTAAGTTTCTGCCTCAAATGAGATAAACATGAATTCTAGTGGTG
193 CCCACCAATTTTTGTAAA-GTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTGATG
* * **
3562548 ATCTTCATTTATTTTGTGATTAGGCACTAGAAACACATTCTCCTCAAAAGGATAAATGATATTGA
257 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGA
* * * *
3562613 TGATTTTCTTTTGCTTGGATATCTTTTATTTGCCCTACTTTCCTTAAAATCAAAGTTCATCCCTT
322 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTT
*** * * *
3562678 AAATAAGATGCGCATCGATTCTCGTCACAGTCTCCACTGCTTTCAAGACTGGGAAGCCAAAACAC
387 AAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACAC
* * * * *
3562743 ATTCCCTTCGTTAGGAAACACGAC
452 ATTCTCTTCATTAGGATACATGGC
* * ** *
3562767 ATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCGCTATTTTTGATTGAATCAAAGTTTGT
1 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGT
* * *
3562832 CCCTTATATAAGACAAACATGAATACTCATACAAATCCCCATTCTTTTCTTGATTAGGCACTATA
66 CTCTTATATAAGACAAACATGAATACTCATACAAATCCCCATTCTTTTCTAGATTAGGCACCATA
* * * * *
3562897 AACGTAGTCTTCTCATTGGGATACACGATATTGATGTTTTGGTTTTGCAAGAAACGCATTTTCCC
131 AACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTTCCC
* * *
3562962 ACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAACCATGGATTCTAGTAAAGATCT
196 ACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTGATGATCT
* * **
3563027 TTATT-ATTTTATGATTAGGCACTATAAACACATTCTCAACATTAGGATAAATGATATTGATGAT
261 TCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGAT
* *
3563091 TTTCTTTTACATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCCCTTAAAT
326 TTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAT
* * *
3563156 AAGAGATGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGTCTGGGAAGCCAAAACACATTC
391 AAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACATTC
3563221 -CTTTCATTAGGATACATGGC
456 TC-TTCATTAGGATACATGGC
* * * *
3563241 ATTGATGCATTGGTGTCACAAGTAACGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGT
1 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGT
* * * * *
3563306 CTCTTATATTAGACAAACATTAATACTCATACAAATCTCCATT-TTTTTTAGGATTAGGCAACAT
66 CTCTTATATAAGACAAACATGAATACTCATACAAATCCCCATTCTTTTCTA-GATTAGGCACCAT
* * * ***
3563370 AAACATATTCTTGTCATTAGGATACATGATATTGATGCTTTGGTTTCATAAGAAAGGCTTTTTTC
130 AAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTTGCAAGAAAGGC-TTTTTC
**
3563435 TAACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTGATGAT
194 CCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTGATGAT
* * *
3563500 CTTCATTCATTTTGCGATTAGGCACTATAAACACAATCTCTTCATTAGGATAAATGATATTGATG
259 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATG
* * *
3563565 ATTTTTTTTTGCATAGAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAAAGTTCATCCCTTAA
324 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAA
* * * * *
3563630 ATAAGACAATCGTCGATTCTCGCAACAGTCTCCATTCCTTTTAAGACTAGGAAGCCAAAACACAT
389 ATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACAT
3563695 TCTCTTCATTAGGATACATGGC
454 TCTCTTCATTAGGATACATGGC
* *
3563717 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCTTTTTTGATTGAATCAAAGTTTGT
1 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGT
* * * *
3563782 CTCTTATACAAGACAAACATGAATACTCATAGAAATCTCCATTCTTTTCTTGATTAGGCACCATA
66 CTCTTATATAAGACAAACATGAATACTCATACAAATCCCCATTCTTTTCTAGATTAGGCACCATA
* * * * * *
3563847 AACCTGGTCTTCTTATTAGGATACACGATATTGATGTTTTGGTTTTGCAGGAAAGGCATTTTCCC
131 AACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTTCCC
* *
3563912 ACCAATTTTTGTAAAGTCTAAGTTTGTGTCTCAAATGTGACAAACATGGATTCTAGTGATGATCT
196 ACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTGATGATCT
* ** * * * * * *
3563977 TAATTCATTTCATAATTAGGCTCCAGAAACACATTCTCCTCAATAGGATAAATGGTATTGATGAT
261 TCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGAT
* * * *
3564042 TTTCTTTTACATGAAAATCTTTTGTTTGCTCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAT
326 TTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAT
* * * * *
3564107 AAGACACGCATCGATTCTCGCAACAGTCTCCATTCCTTTCATGACTGGGAAGCCAAATCAAATTC
391 AAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACATTC
*
3564172 -CGTTCATTAGGATATATGGC
456 TC-TTCATTAGGATACATGGC
* * * * *
3564192 ATTGATGCTTTGGTGTCGCAAGAAAGGCTTTCCTTTCCATCATTTTTGATAGAATGAAAGTTTGT
1 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGT
* * *
3564257 CTCTTATATAAGACAAACATGAATACATGATACAAATCCCCGTTCTTTTCTTGATTAGGCACCAT
66 CTCTTATATAAGACAAACATGAATAC-TCATACAAATCCCCATTCTTTTCTAGATTAGGCACCAT
* * * * * * * * *
3564322 AAACATAGTCTTCTGATTAGGGTAGACGATATTGACGTTTTAGTTATGCAAGAAAGGCATTTTCG
130 AAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTTCC
* *
3564387 CACCAATTTTTGTAAAGTCTAAGTTTATGCCTCAAATGAGACAAACATAGATTCTAGTGATGATC
195 CACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTGATGATC
** * * * *
3564452 TTCATTCATTTTGTGATTAGGCACTATAAATGCGTACTCCTCTTTAGGATAAATGGTATTGATGA
260 TTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGA
* * *
3564517 TTTTCTTTTACATGGAAATCTTTTCTTTCCCCTATTTTCCTTAAAATCAAAGTTCATCCCATAAA
325 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAA
* * **
3564582 TAAGACACGCATCGATTCTCATAACAGTCTCTGTTCCTTTCAAGA-TGGGAAGCCAAAACACATT
390 TAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACATT
3564646 C-CATTCATTAGGATACATGGC
455 CTC-TTCATTAGGATACATGGC
* *
3564667 ATTGATACTTTGGTG-CTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTG
1 ATTGATGCTTTGGTGTC-GCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTG
* * * * *
3564731 TCTCTTATATAAGACAAATATTACTACTCATGCAAATCCCCATT-TTTTTTAGGATTAGGCACCA
65 TCTCTTATATAAGACAAACATGAATACTCATACAAATCCCCATTCTTTTCTA-GATTAGGCACCA
* * * * * * *
3564795 TAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAAGGTTTTTTT
129 TAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTTGCAAGAAAGG--CTTTT
* * *
3564860 TCCCACCAATTATTGTAAAGTCTAAGTTTGTACCTCAAATGAGACAAACATTGATTCTAGTGATG
192 TCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTGATG
* * *
3564925 ATCTTCATTCATTTTTTGATTAGGCACTATAAACACATTCTCTTCATTAGGATAAATGGTATTGA
257 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGA
* * *
3564990 TGATTTTTTTTTCGCATGGAAATCTTTTCTTTGCCCTATTTT-TTTGAAAATCAAAGTTCATCTC
322 TGATTTTCTTTT-GCATGGAAATCTTTTCTTTGCCCTATTTTCCTT-AAAATCAAAGTTCATCCC
* * * * *
3565054 TTAAATAAGACAAGCGTTGATTCT-TTAACAGTCTCTATTCCTTTCAAGATTGGGAAGCCAAAAC
385 TTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAAC
* * *
3565118 ACATTCTCTTCATTAAGCTACACGGC
450 ACATTCTCTTCATTAGGATACATGGC
****
3565144 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCTTTTGTTTTTGATAGAATCAAAGTTTGT
1 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGT
* * * *
3565209 CTCGTATATAAGACAAACATGAATA-TGCATACAAATCCCTATTCTTTTCTTGATTAGGCAACAT
66 CTCTTATATAAGACAAACATGAATACT-CATACAAATCCCCATTCTTTTCTAGATTAGGCACCAT
* ** * * *
3565273 -AACATAGTCTTCTCATTGGGATACATTATATTGATGCTTTGGATTTGGAAGAAATGCTTTTTTC
130 AAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTTGCAAGAAAGGC-TTTTTC
* * *
3565337 CTACCGATTTTTATAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTGATGAT
194 CCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTGATGAT
* * * * * *
3565402 CTTCATTCATTTTGTGATTAGGCATTAGAAACACATTCTCTTCAATAAGATAAATGATATTGATA
259 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATG
* * * * * * *
3565467 ATTTTTTTTTGCACGAAAATCTTATCTTTGCCTTATTTTCTTTAAAATCAAAAG-TCATCTCTTA
324 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC-AAAGTTCATCCCTTA
* *
3565531 AATAAGACAGGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGATTGGGAAGCCAAAACACA
388 AATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACA
* *
3565596 TTCCCTTCATTAGGATACACGGC
453 TTCTCTTCATTAGGATACATGGC
* * * * * * * *
3565619 TTTGATGCTTTGGTGTTGCAAGAAAAGCTTTCCTTTCTATCATTTTTTATAGAATCAAAGTATGT
1 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGT
* * * * * * * **
3565684 CTCCTATATTAGAGAAACATTAATGCTCATGCAAATCCCCATTTTTTTC-AGGAGCAGGCGA-CA
66 CTCTTATATAAGACAAACATGAATACTCATACAAATCCCCATTCTTTTCTA-GATTAGGC-ACCA
* * *
3565747 TAAACATATTC-TCGTCATTAAGATACACGATATTGATGCTTTGGTTTTGCAAAAAAGGCTTTCT
129 TAAACATAGTCTTC-TCATTAGGATACACGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTT-T
* *
3565811 TCCCACCAATTTTTGAAAAGTCTAAGTTTGTGCCTCAAATGAGAAAAACATGGATTCTTA-TGAT
192 TCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTC-TAGTGAT
* * *
3565875 GATCTTCATTCATTTTGTGATTAGGCACTATAAACACAATCTCTTCATTAGGTTAAATGATATTG
256 GATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTG
3565940 ATGATTTT-TTTTGCATGGAAATCTTTTCTTTG-CCTCATTTTCCTTAAAATCAAAGTTCATCCC
321 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCT-ATTTTCCTTAAAATCAAAGTTCATCCC
* *
3566003 TTAAATAAGACAAGCGTCGATTCTCGTAATAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAAC
385 TTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAAC
* * *
3566068 ACGTTCTCCTCATTAAGATACATGGC
450 ACATTCTCTTCATTAGGATACATGGC
* * ** *
3566094 ATTGATGCTTTGGTGTGGCAAGTAAAGCTTTTCTTTCCACCAATTTTGATAGAGTCAAAGTTTGT
1 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGT
* * * * * * *
3566159 CTCTTATACAAGACAAACTTGAATACTCATACTAATCTCCATTTTTTTCAAGAGTAGGCACCATA
66 CTCTTATATAAGACAAACATGAATACTCATACAAATCCCCATTCTTTTCTAGATTAGGCACCATA
* * * *
3566224 AACATAGCCTTCTCCTTAGGATACATC-ATATTGATGCTTTGGTTTTGTAAGAAAGGCATTTTCC
131 AACATAGTCTTCTCATTAGGATACA-CGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTTCC
* * *
3566288 CACCAATTTTTGTAAAGTCTATGTTTGTGCCTCAAATGAGACAAGCATGGATTCTGGTGATGATC
195 CACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTGATGATC
* * * * * * *
3566353 TTCATTCATTTTGTGATTAGGCACTACAAGCACATTATCCTTAATAGAATAAATGATACTGATGA
260 TTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGA
* * * **
3566418 TTTTCTTTTGCATTGAAATCTTATCCTTGCCCTATTTTCCTTAAAATCAAAGTTCATCATTTAAA
325 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAA
*
3566483 TAAGACACGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACATT
390 TAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACATT
* *
3566548 CCCTTCATTAGGACACATGGC
455 CTCTTCATTAGGATACATGGC
* * * *
3566569 TTTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATACAATCAATGTTTTT
1 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGT
* * * *
3566634 CTTTTCTATAAGACAAACATGAATACTCATACTAAT-CCCATTCTTTTCTAGATTAGGCACCCTA
66 CTCTTATATAAGACAAACATGAATACTCATACAAATCCCCATTCTTTTCTAGATTAGGCACCATA
* * * * * * *
3566698 AATATAGTCTTCTCTTTAGGATACATGATATTGTTGCTTTAGTTTCGCAAGAAATGCTTTCTTCC
131 AACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTT-TTCC
* * * *
3566763 CATCAATTTTTGTAAAGTCTAAGTTTGTACCTCAAATGAGACAAACATGGATGCTAGTGGTGATC
195 CACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTGATGATC
* * * *
3566828 TTCTTTCATTTTGGGATTAGGTACTATAAACACATTCTCCTCATTAAGATAAAAT-ATATT-AGT
260 TTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGAT-AAATGATATTGA-T
* * * *
3566891 AATTTTCTTTTACATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCCCTTA
323 GATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTA
** * *
3566956 AATAAGACAAGCATTAATTCTCGTAACAGTCTCCATTCCTTTCAAGACTAGGAAGCCAAATCACA
388 AATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACA
* *
3567021 TT-TGC-TCTATTAGGATAAATTGC
453 TTCT-CTTC-ATTAGGATACATGGC
* *
3567044 ATTGAGGCTTTGGTGTCTCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGT
1 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGT
* * * * * * *
3567109 CTCTCAGATAAAACAAACATGAATACTCGTACTAATCCCCATTCTTTTATAGATTAGGAACCATA
66 CTCTTATATAAGACAAACATGAATACTCATACAAATCCCCATTCTTTTCTAGATTAGGCACCATA
* * * * * * *
3567174 AACATAGTCTTCTCATTAGGATATAAGATATTGAGGTTTTGGTTTTGTAAGAGAGGCATTTTCCC
131 AACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTTCCC
* * * *
3567239 ACTAATTTTTGTAAAGTCTAAATTTGTGCCTCAAATGAGACTAACATGGTTTCTAGTGATGATCT
196 ACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTGATGATCT
* * * *
3567304 TCATTCATTTTGTGATTAGGCAGTAGAAACACATTCTCCGCATTAGGATAAATGATATTGGTGAT
261 TCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGAT
* *
3567369 TTTCTTTTGCATGGAAATCTTTTCTTTGCCCGATTGTCCTTAAAATCAAAGTTCATCCCTTAAAT
326 TTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAT
* * * *
3567434 AAGACAAGCATTGATTCTTGTAACAGTCTCCATTTCTTTCAAGACTGGGAAGCCAAATCACATT-
391 AAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACATTC
* *
3567498 TCCTTCACTAGGATAAATGGC
456 T-CTTCATTAGGATACATGGC
* * * * * *
3567519 GTTGATGCTTTGGTGTCACAAAAAAAGCTTTT-TTCTGCACCGTTTTGGATGGAATCAAAGTTTG
1 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT-TCCACCGTTTTTGATAGAATCAAAGTTTG
* * *
3567583 TCTCTTATATAAGACAAACATGAATACTCGTACTAATCCCCATT-TTTTCTAGATTAGGAACCAT
65 TCTCTTATATAAGACAAACATGAATACTCATACAAATCCCCATTCTTTTCTAGATTAGGCACCAT
* * *
3567647 AAACATAGTCTTCTCATTAGGATACATGATATTGATGTTTTGGTTTTGTAA-AAGAGGCTTTTTC
130 AAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTTGCAAGAA-AGGCTTTTTC
* *
3567711 CCACCAAGTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACTTGGATTCTAGTGATGAT
194 CCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTGATGAT
* * *
3567776 CTCCATTCATTTTATGATTAGGCACTATAAATACATTCTCCTCATTAGGATAAATGATATTGATG
259 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATG
** * *
3567841 ATTTTCTTTTAAATTGAAATCTTTTCTTTGCCCTCTTTTCCTTAAAATCAAAGTTCATCCCTTAA
324 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAA
* * ** *
3567906 ATAAGACAAGTATCGATTCTTGTAACAGTCTCCATTCCTTTTGAGACTGGTAAGCCAAAACACAT
389 ATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACAT
* *
3567971 TCCCTTCATTAGGATGCATGGC
454 TCTCTTCATTAGGATACATGGC
* * * ** ** *
3567993 ATTGATGATTTGGTGTCACAAGAAAAGCTTTTATTTCCATAGTTTTAAAAAAGAATCAAAGTTTG
1 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTT-TGATAGAATCAAAGTTTG
* * * * * * * *
3568058 TCTCTTAAATAAGATAAATATAAATATTCATACTAATCCCCATTCTCTTC-AGCATTAGGCAACA
65 TCTCTTATATAAGACAAACATGAATACTCATACAAATCCCCATTCTTTTCTAG-ATTAGGCACCA
* * * * *
3568122 TAAACATAGTCTTCTCTTTAGGATACTTC-ATATTAATGCTTTGGATTCGCAAGAAAGGCTTTTT
129 TAAACATAGTCTTCTCATTAGGATAC-ACGATATTGATGCTTTGGTTTTGCAAGAAAGGC-TTTT
* * * * * * *
3568186 TCCCACTAATTTCTGTAAAGTC-AAGTTCGTGCCTCAAATTAGAAAAACATAGATTCTAGTAATG
192 TCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTGATG
* *
3568250 ATCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATTTTGA
257 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGA
** * * * *
3568315 TGATTTTCTTTTATATGGAAATCTTTTGTTTACTCTATTTTCCTTAAAATCAAAGTTCATCCCTA
322 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTT
*
3568380 AAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACAA
387 AAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACAC
*
3568445 ATTCTCTTCATTAGGATAAATGGC
452 ATTCTCTTCATTAGGATACATGGC
* * *
3568469 ATTGATGCTTTGGTGTCGCAAGAAAAACTTTTCCTTCCACCATTTTTGATAGAATCAAAGTTTGT
1 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGT
* * * * * * * *
3568534 CTCTTATACAAGACAAGCTTGAATACTCATACTAATCTCCATTTTTTTCAAGAGTAGGCACCATA
66 CTCTTATATAAGACAAACATGAATACTCATACAAATCCCCATTCTTTTCTAGATTAGGCACCATA
* * *
3568599 AACATAGTCTTCTCCTTAGGATACATC-ATATTGATGCTTTGGTTTTGTAAGAAAGGCATTTTCC
131 AACATAGTCTTCTCATTAGGATACA-CGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTTCC
* * *
3568663 CACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAATTGAGACAAGCATGGATTCTGGTGATGATC
195 CACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTGATGATC
* * * * * *
3568728 TTCATTCATTTTGTGATTAGGCACTACAAGCTCATTTTCCTCAATAGGATAAATGATATTAATGA
260 TTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGA
*
3568793 TTTTCTTTTGCATGGAAATCTTATCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAA
325 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAA
* * * *** *
3568858 TAAGATACGCATCGATTCTCATAACAGTCTTTGTTCCTTTCAAGACTAGGAAGCCAAAACACATT
390 TAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACATT
*
3568923 CCCTTCATTAGG
455 CTCTTCATTAGG
3568935 TGATGAAAAC
Statistics
Matches: 5374, Mismatches: 724, Indels: 136
0.86 0.12 0.02
Matches are distributed among these distances:
471 76 0.01
472 1 0.00
473 14 0.00
474 1069 0.20
475 2454 0.46
476 1516 0.28
477 237 0.04
478 7 0.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.37
Consensus pattern (475 bp):
ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGT
CTCTTATATAAGACAAACATGAATACTCATACAAATCCCCATTCTTTTCTAGATTAGGCACCATA
AACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTTCCC
ACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTGATGATCT
TCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGAT
TTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAT
AAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACATTC
TCTTCATTAGGATACATGGC
Found at i:3570533 original size:474 final size:472
Alignment explanation
Indices: 3569626--3571101 Score: 2060
Period size: 474 Copynumber: 3.1 Consensus size: 472
3569616 ATGGTTGTCA
* * * * * * *
3569626 TCATTAGGACACATGGCTTTGATGCTTTGGTGTCACAAGAGAAGCTTTTCTGTCCACCATTTTTG
1 TCATTAGGATAAATGGCATTGATGCTTTGGTGTCACAAAAAAAGCTTTTCTTTCCACCATTTTGG
* * * * * *
3569691 ATATAATCAAAGTTTTTCTTTTCTATAAGACAAACATGAATACTCATACTAATCCCATTCTTTTC
66 ATAGAATCAAAGTTTGTCTCTTATATAAGATAAACATGAATACTCGTACTAATCCCATTCTTTTC
* * * * * * * * *
3569756 TAGATTAGGCACCCA-AAATACAGTCTTCTCATTAGGATACACGATATTGTTGCTTTAGTTTCAC
131 TAGATTAGG-AACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGTTTTGGTTTTAT
3569820 AAGAAAGGC-TTTCTTCTCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACA
195 AAGAAAGGCATTTC--C-CACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACA
* * * * *
3569884 TGGATGCTAGTGGTGATCTTCATTCATTTTCGGACTAGGTACTATAAACACATTCTCCTCATTAA
257 TGGATTCTAGTGATGATCTTCATTCATTTTGGGATTAGGCACTATAAACACATTCTCCTCATTAA
* * *
3569949 GATGAAA-GATATTAGTAATTTTCTTTTACATGGAAATCTTTTCTTTGCCCTATTTCCCTTAAAA
322 GAT-AAATGATATTGGTGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTT-CCTTAAAA
* * *
3570013 TCAAAGCTCATCCCTTAAATAAGACAAGCATCAATTCTCATAACAGTCTCCATTCCTTTCAAGAC
385 TCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGAC
*
3570078 TAGGAAGCCAAATCACATTTCCT
450 TGGGAAGCCAAATCACATTTCCT
* * * * * *
3570101 TTATTAGGATAAATTGCATTGAGGCTTTGGTGTCTCAAGAAAAGCTTTTCTTTCCACCGTTTTGG
1 TCATTAGGATAAATGGCATTGATGCTTTGGTGTCACAAAAAAAGCTTTTCTTTCCACCATTTTGG
*
3570166 AAAGAATCAAAGTTTGTCTCTTATATAAGATAAACATGAATACTCGTACTAATCCCAATTCTTTT
66 ATAGAATCAAAGTTTGTCTCTTATATAAGATAAACATGAATACTCGTACTAATCCC-ATTCTTTT
* * * *
3570231 CTAGATTAGGAACCGTAAACGTAGTCTTCTCATTAGGATATATGATATTGATGTTTTGGTTTTGT
130 CTAGATTAGGAACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGTTTTGGTTTTAT
* * * *
3570296 AAGAGAGGCATTTCCCACTAAATTTTGTAAAGTCTACGTTTGTGCCTCAAATGAGACAAACATGG
195 AAGAAAGGCATTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGG
* * *
3570361 ATTCTAGTGATGATCTTCATTCATTTTGGGATTAGGCACTAGAAACACTTTCTCCTCATTAGGAT
260 ATTCTAGTGATGATCTTCATTCATTTTGGGATTAGGCACTATAAACACATTCTCCTCATTAAGAT
* *
3570426 AAATGATATTGGTGATTTTCCTTTGCATGGAAATCTTTTCTTTGCCCGATTGTCCTTAAAATCAA
325 AAATGATATTGGTGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATT-TCCTTAAAATCAA
* *
3570491 AGTTCATCCCTTAAATAAGATAAGCATTGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGG
389 AGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGG
* *
3570556 AATCTAAATCACATTTCCT
454 AAGCCAAATCACATTTCCT
* * *
3570575 TCACTAGGATAAATGGCATTGATGCTTTGGTGTCGCAAAAAAAGCTTTTCTTTGCACCATTTTGG
1 TCATTAGGATAAATGGCATTGATGCTTTGGTGTCACAAAAAAAGCTTTTCTTTCCACCATTTTGG
*
3570640 ATGGAATCAAAGTTTGTCTCTTATATAAGATAAACATGAATACTCGTACTAATCCCATTCTTTTC
66 ATAGAATCAAAGTTTGTCTCTTATATAAGATAAACATGAATACTCGTACTAATCCCATTCTTTTC
3570705 TAGATTAGGAACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGTTTTGGTTTTATA
131 TAGATTAGGAACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGTTTTGGTTTTATA
* * * *
3570770 AGAAAGGCATTTTCCCACCAATTTTTGTAAAATCTAAGTTTGCGCCCCAAATGAGACAAGCATGG
196 AGAAAGGCA-TTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGG
* * * * * * *
3570835 ATTTTGGTGATGATCTTCATTCATTTTGTGATTAGGCATTATAAGCACATTCTCCTCAATATGAT
260 ATTCTAGTGATGATCTTCATTCATTTTGGGATTAGGCACTATAAACACATTCTCCTCATTAAGAT
* * *
3570900 AAATGATATTGATGATTTTCTTTTGCATGAAAATCTTATCTTTGCCCTATTTTCCTTAAAATCAA
325 AAATGATATTGGTGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTA-TTTCCTTAAAATCAA
* * ***
3570965 AGTTAATCCCTTAAATAAGACACGCATCGATTCTCGTAACAGTCTTTGTTCCTTTCAAGACTGGG
389 AGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGG
* *
3571030 AAGCCAAAACACATTCCCT
454 AAGCCAAATCACATTTCCT
* * *
3571049 TCATTA-GACACATGGCTTTGATGCTTTGGTGTCACAAAAAAAGCTTTTCTTTC
1 TCATTAGGATAAATGGCATTGATGCTTTGGTGTCACAAAAAAAGCTTTTCTTTC
3571102 TGATGAAAAC
Statistics
Matches: 885, Mismatches: 109, Indels: 16
0.88 0.11 0.02
Matches are distributed among these distances:
473 123 0.14
474 584 0.66
475 110 0.12
476 64 0.07
477 4 0.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (472 bp):
TCATTAGGATAAATGGCATTGATGCTTTGGTGTCACAAAAAAAGCTTTTCTTTCCACCATTTTGG
ATAGAATCAAAGTTTGTCTCTTATATAAGATAAACATGAATACTCGTACTAATCCCATTCTTTTC
TAGATTAGGAACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGTTTTGGTTTTATA
AGAAAGGCATTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGA
TTCTAGTGATGATCTTCATTCATTTTGGGATTAGGCACTATAAACACATTCTCCTCATTAAGATA
AATGATATTGGTGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTCCTTAAAATCAAAG
TTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAA
GCCAAATCACATTTCCT
Found at i:3570783 original size:159 final size:160
Alignment explanation
Indices: 3569644--3570811 Score: 450
Period size: 159 Copynumber: 7.4 Consensus size: 160
3569634 ACACATGGCT
* * * * * * * *
3569644 TTGATGCTTTGGTGTCACAAGAGAAGCTTTTCTGTCCACCATTTTTGATATAATCAAAGTTTTTC
1 TTGATGTTTTGGTTTCATAAGAAAAGCTTTTCTTTCCACCATTTTGGATAAAATCAAAGTTTGTC
* ** * * *
3569709 TTTTCTATAAGACAAACATGAATACTCAT-ACTAATC-CCATTCTTTTCTAGATTAGGCACCCA-
66 TCTTAAATAAGATAAACATGAATACTCGTAACTAATCTCCATTCTTTTCTAGATTAGG-AACCAT
* * * *
3569771 AAATACAGTCTTCTCATTAGGATACACGATA
130 AAACATAGTCTTCTCATTAGGATAAATGATA
* * * * * * * *
3569802 TTGTTGCTTTAGTTTCACAAGAAAGGC-TTTC-TTCTCACCAATTTTTG-TAAAGTCTAAGTTTG
1 TTGATGTTTTGGTTTCATAAGAAAAGCTTTTCTTTC-CACC-ATTTTGGATAAAATCAAAGTTTG
* * * * * * ** * * * * *
3569864 TGC-CTCAAATGAGACAAACATGGATGCTAGT-GGTGATCTTCATTCATTTTC-GGACTAGGTAC
64 T-CTCTTAAATAAGATAAACATGAATACTCGTAACTAATCTCCATTC-TTTTCTAGATTAGGAAC
* * * * *
3569926 TATAAACACATTCTCCTCATTAAGATGAAA-GATA
127 CATAAACATAGTCTTCTCATTAGGAT-AAATGATA
* ** * * * **** *
3569960 TT-AGTAATTTTCTTTTACAT--GGAAATCTTTTCTTTGCC-CTATTTCCCTTAAAATCAAAGCT
1 TTGA-T-GTTTTGGTTT-CATAAGAAAAGCTTTTCTTT-CCACCATTTTGGATAAAATCAAAGTT
** * * * * * * * * * *
3570021 CATCCCTTAAATAAGACAAGCATCAATTCTCATAAC-AGTCTCCATTCCTTTCAAGACTAGGAAG
62 TGTCTCTTAAATAAGATAAACATGAATACTCGTAACTAATCTCCATTCTTTTCTAGATTAGGAA-
* *
3570085 CCA-AATCACAT-TTCCTT-T-ATTAGGATAAATTG-CA
126 CCATAA--ACATAGT-CTTCTCATTAGGATAAA-TGATA
* * * *
3570119 TTGAGGCTTTGGTGTC-TCAAGAAAAGCTTTTCTTTCCACCGTTTTGGA-AAGAATCAAAGTTTG
1 TTGATGTTTTGGTTTCAT-AAGAAAAGCTTTTCTTTCCACCATTTTGGATAA-AATCAAAGTTTG
*
3570182 TCTCTTATATAAGATAAACATGAATACTCGT-ACTAATC-CCAATTCTTTTCTAGATTAGGAACC
64 TCTCTTAAATAAGATAAACATGAATACTCGTAACTAATCTCC-ATTCTTTTCTAGATTAGGAACC
* * *
3570245 GTAAACGTAGTCTTCTCATTAGGATATATGATA
128 ATAAACATAGTCTTCTCATTAGGATAAATGATA
** * * * * * * *
3570278 TTGATGTTTTGGTTTTGTAAGAGAGGCATTTC---CCACTAAATTTT-G-TAAAGTCTACGTTTG
1 TTGATGTTTTGGTTTCATAAGAAAAGCTTTTCTTTCCAC--CATTTTGGATAAAATCAAAGTTTG
* * * * * * * * * ** *
3570338 TGC-CTCAAATGAGACAAACATGGATTCTAGTGA-TGATCTTCATTCATTTT-GGGATTAGGCAC
64 T-CTCTTAAATAAGATAAACATGAATACTCGTAACTAATCTCCATTC-TTTTCTAGATTAGGAAC
* * * *
3570400 TAGAAACACT-TTCTCCTCATTAGGATAAATGATA
127 CATAAACA-TAGTCTTCTCATTAGGATAAATGATA
* ** * * * * *** *
3570434 TTGGTGATTTTCCTTTGCAT--GGAAATCTTTTCTTTGCC-CGATTGTCCTTAAAATCAAAGTTC
1 TTGATG-TTTTGGTTT-CATAAGAAAAGCTTTTCTTT-CCACCATTTTGGATAAAATCAAAGTTT
* * * * * * * * * *
3570496 ATCCCTTAAATAAGATAAGCATTG-ATTCTCGTAAC-AGTCTCCATTCCTTTCAAGACTGGGAAT
63 GTCTCTTAAATAAGATAAACA-TGAATACTCGTAACTAATCTCCATTCTTTTCTAGATTAGGAAC
* * **
3570559 C-TAAATCACA-T-TTCCTTCACTAGGATAAATGGCA
127 CATAAA-CATAGTCTT-C-TCATTAGGATAAATGATA
* * ** * * **
3570593 TTGATGCTTTGGTGTCGCAAAAAAAGCTTTTCTTTGCACCATTTTGGATGGAATCAAAGTTTGTC
1 TTGATGTTTTGGTTTCATAAGAAAAGCTTTTCTTTCCACCATTTTGGATAAAATCAAAGTTTGTC
*
3570658 TCTTATATAAGATAAACATGAATACTCGT-ACTAATC-CCATTCTTTTCTAGATTAGGAACCATA
66 TCTTAAATAAGATAAACATGAATACTCGTAACTAATCTCCATTCTTTTCTAGATTAGGAACCATA
*
3570721 AACATAGTCTTCTCATTAGGATACATGATA
131 AACATAGTCTTCTCATTAGGATAAATGATA
* * * *
3570751 TTGATGTTTTGGTTTTATAAGAAAGGCATTTTC---CCACCAATTTTTG-TAAAATCTAAGTTTG
1 TTGATGTTTTGGTTTCATAAGAAAAGC-TTTTCTTTCCACC-ATTTTGGATAAAATCAAAGTTTG
3570812 CGCCCCAAAT
Statistics
Matches: 715, Mismatches: 224, Indels: 144
0.66 0.21 0.13
Matches are distributed among these distances:
156 108 0.15
157 82 0.11
158 182 0.25
159 318 0.44
160 19 0.03
161 6 0.01
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.36
Consensus pattern (160 bp):
TTGATGTTTTGGTTTCATAAGAAAAGCTTTTCTTTCCACCATTTTGGATAAAATCAAAGTTTGTC
TCTTAAATAAGATAAACATGAATACTCGTAACTAATCTCCATTCTTTTCTAGATTAGGAACCATA
AACATAGTCTTCTCATTAGGATAAATGATA
Found at i:3577115 original size:42 final size:42
Alignment explanation
Indices: 3577060--3577178 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
3577050 TTCTTCTCTC
* *
3577060 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
3577102 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
3577144 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
3577179 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:3577119 original size:12 final size:11
Alignment explanation
Indices: 3577093--3577168 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
3577083 TCTATTATCT
*
3577093 CTCCTGTCTCTC
1 CTCCTATCTC-C
3577105 CTCCTATCATCC
1 CTCCTATC-TCC
3577117 CTCCTATCT--
1 CTCCTATCTCC
*
3577126 CTACTATCT--
1 CTCCTATCTCC
*
3577135 CTCCTGTCTCTC
1 CTCCTATCTC-C
3577147 CTCCTATCATCC
1 CTCCTATC-TCC
*
3577159 CTCCTCTCTC
1 CTCCTATCTC
3577169 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:3577120 original size:24 final size:24
Alignment explanation
Indices: 3577084--3577169 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
3577074 CCTCCTCTCT
* *
3577084 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
3577108 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
3577129 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
3577150 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
3577170 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:3577144 original size:18 final size:18
Alignment explanation
Indices: 3577075--3577145 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
3577065 CCTGTCATCC
* *
3577075 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
3577093 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
3577115 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
3577135 CTCCTGTCTCT
1 CTCCTGTCTCT
3577146 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:3583002 original size:42 final size:42
Alignment explanation
Indices: 3582947--3583065 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
3582937 TTCTTCTCTC
* *
3582947 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
3582989 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
3583031 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
3583066 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:3583006 original size:12 final size:11
Alignment explanation
Indices: 3582980--3583055 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
3582970 TCTATTATCT
*
3582980 CTCCTGTCTCTC
1 CTCCTATCTC-C
3582992 CTCCTATCATCC
1 CTCCTATC-TCC
3583004 CTCCTATCT--
1 CTCCTATCTCC
*
3583013 CTACTATCT--
1 CTCCTATCTCC
*
3583022 CTCCTGTCTCTC
1 CTCCTATCTC-C
3583034 CTCCTATCATCC
1 CTCCTATC-TCC
*
3583046 CTCCTCTCTC
1 CTCCTATCTC
3583056 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:3583007 original size:24 final size:24
Alignment explanation
Indices: 3582971--3583056 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
3582961 CCTCCTCTCT
* *
3582971 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
3582995 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
3583016 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
3583037 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
3583057 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:3583031 original size:18 final size:18
Alignment explanation
Indices: 3582962--3583032 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
3582952 CCTGTCATCC
* *
3582962 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
3582980 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
3583002 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
3583022 CTCCTGTCTCT
1 CTCCTGTCTCT
3583033 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:3585199 original size:12 final size:11
Alignment explanation
Indices: 3585177--3585294 Score: 72
Period size: 12 Copynumber: 10.9 Consensus size: 11
3585167 AGAGAAAGAA
*
3585177 GAGAGAGGAGG
1 GAGATAGGAGG
3585188 GATGATAGGAGG
1 GA-GATAGGAGG
*
3585200 AGAGACAGGA--
1 -GAGATAGGAGG
*
3585210 GAGATAGTA--
1 GAGATAGGAGG
3585219 GAGATAGGAGG
1 GAGATAGGAGG
3585230 GATGATAGGAGG
1 GA-GATAGGAGG
*
3585242 AGAGACAGGA--
1 -GAGATAGGAGG
*
3585252 GAGATAGTA--
1 GAGATAGGAGG
3585261 GAGATAGGAGG
1 GAGATAGGAGG
3585272 GATGATAGGAGG
1 GA-GATAGGAGG
*
3585284 AGAGACAGGAG
1 -GAGATAGGAG
3585295 AGATAATAGA
Statistics
Matches: 87, Mismatches: 10, Indels: 19
0.75 0.09 0.16
Matches are distributed among these distances:
9 30 0.34
11 6 0.07
12 45 0.52
13 6 0.07
ACGTcount: A:0.40, C:0.03, G:0.47, T:0.10
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:3585211 original size:9 final size:9
Alignment explanation
Indices: 3585197--3585299 Score: 65
Period size: 9 Copynumber: 12.1 Consensus size: 9
3585187 GGATGATAGG
*
3585197 AGGAGAGAC
1 AGGAGAGAT
3585206 AGGAGAGAT
1 AGGAGAGAT
*
3585215 AGTAGAGAT
1 AGGAGAGAT
*
3585224 AGGAGGGAT
1 AGGAGAGAT
* *
3585233 --GATAG-G
1 AGGAGAGAT
*
3585239 AGGAGAGAC
1 AGGAGAGAT
3585248 AGGAGAGAT
1 AGGAGAGAT
*
3585257 AGTAGAGAT
1 AGGAGAGAT
*
3585266 AGGAGGGAT
1 AGGAGAGAT
* *
3585275 --GATAG-G
1 AGGAGAGAT
*
3585281 AGGAGAGAC
1 AGGAGAGAT
3585290 AGGAGAGAT
1 AGGAGAGAT
3585299 A
1 A
3585300 ATAGAGAGAG
Statistics
Matches: 69, Mismatches: 19, Indels: 12
0.69 0.19 0.12
Matches are distributed among these distances:
7 6 0.09
8 8 0.12
9 55 0.80
ACGTcount: A:0.42, C:0.03, G:0.45, T:0.11
Consensus pattern (9 bp):
AGGAGAGAT
Found at i:3585227 original size:18 final size:18
Alignment explanation
Indices: 3585200--3585312 Score: 64
Period size: 18 Copynumber: 5.6 Consensus size: 18
3585190 TGATAGGAGG
3585200 AGAGACAGGAGAGATAGT
1 AGAGACAGGAGAGATAGT
* *
3585218 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGA--GA-GAT---AGT
3585242 AGAGACAGGAGAGATAGT
1 AGAGACAGGAGAGATAGT
* *
3585260 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGA--GA-GAT---AGT
*
3585284 AGAGACAGGAGAGATAAT
1 AGAGACAGGAGAGATAGT
*
3585302 AGAGAGAGGAG
1 AGAGACAGGAG
3585313 GGATGACAGG
Statistics
Matches: 73, Mismatches: 10, Indels: 24
0.68 0.09 0.22
Matches are distributed among these distances:
18 31 0.42
20 4 0.05
21 12 0.16
22 4 0.05
24 22 0.30
ACGTcount: A:0.42, C:0.03, G:0.44, T:0.11
Consensus pattern (18 bp):
AGAGACAGGAGAGATAGT
Found at i:3585228 original size:42 final size:42
Alignment explanation
Indices: 3585167--3585327 Score: 268
Period size: 42 Copynumber: 3.8 Consensus size: 42
3585157 TAGCCCTCAA
* *
3585167 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
3585209 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
3585251 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
3585293 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
3585328 GAGAGAAGAA
Statistics
Matches: 113, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 113 1.00
ACGTcount: A:0.42, C:0.02, G:0.46, T:0.09
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:3591690 original size:312 final size:316
Alignment explanation
Indices: 3591117--3591756 Score: 796
Period size: 312 Copynumber: 2.0 Consensus size: 316
3591107 GAAATATGGC
* * * * *
3591117 ATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCATCGTGTTTTATAGATTCAAAGTTTAT
1 ATTGATGATTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTGTTTGATAGAATCAAAGTTTAT
* * **
3591182 CTCTTATACGAGACAAACTTGAATACTCATACTAATCCCCATTTTTTTCAGGATTAGGCACCATA
66 CTCTTATACAAGACAAACATGAATACT-ATACTAATCCCCATTCCTTTCAGGATTAGGCACCATA
* * * * * *
3591247 AACATTGTCTTCTCCTTAGGATGCATCTTATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTTTCC
130 AACATAGTCTTCTCCTTAGGATACATCATATTGATGCTTTGGATTCGCAAGAAAGCCTTTTTTCC
* * * *
3591312 TACCAATTTTTGTAAAGTCTAAGTTCATGCGTCAAATTAGACGAACATTGATTCTAGTAATGATC
195 TACCAATTTTTGAAAAGTCTAAGTTCATGCGTCAAATGAGACAAACATGGATTCTAGTAATGATC
* * * * *
3591377 TTCATTTATTTTGTAATTAGGCACTATG-CACATATTCTCCT-AATTTTGG-TAATTGAT
260 TTCATTCATTTTGTAATTAGGCACTA-GAAACACATTCTCCTCAA--TAGGATAAATGAT
* * *
3591434 ATTGATGATTTGGTGTCGTAAGAAAAGCTTTTCTTTCGACCGCT-TTTGATAGAATCAAAGTTTG
1 ATTGATGATTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCG-TGTTTGATAGAATCAAAGTTTA
*
3591498 TCTCTTATATAAGACAAACATG-A-A-T-TACTAATCCCCATTCCTTTCAGGATTAGGCACCATA
65 TCTCTTATACAAGACAAACATGAATACTATACTAATCCCCATTCCTTTCAGGATTAGGCACCATA
** * * *
3591559 AGTATAGTCTTGTCGTTAGGATACATCATATTGATGCTTTGGATTCGCTAGAAAGCCTTTTTTCC
130 AACATAGTCTTCTCCTTAGGATACATCATATTGATGCTTTGGATTCGCAAGAAAGCCTTTTTTCC
* * * **
3591624 TACCAATTTTTGAAAAGTCTAGGGTT-GTGTC-TCAAATGAGACAAACATGGATTTTAGTGGTGA
195 TACCAATTTTTGAAAAGTCTA-AGTTCATG-CGTCAAATGAGACAAACATGGATTCTAGTAATGA
*
3591687 TCTTCATTCATTTTGTGATTAGGCACTAGAAACACATTCTCCTCAATAGGATAAATGAT
258 TCTTCATTCATTTTGTAATTAGGCACTAGAAACACATTCTCCTCAATAGGATAAATGAT
3591746 ATTGATGATTT
1 ATTGATGATTT
3591757 TTTTGCTTGG
Statistics
Matches: 278, Mismatches: 39, Indels: 17
0.83 0.12 0.05
Matches are distributed among these distances:
311 4 0.01
312 191 0.69
313 6 0.02
314 1 0.00
315 1 0.00
316 1 0.00
317 73 0.26
318 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (316 bp):
ATTGATGATTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTGTTTGATAGAATCAAAGTTTAT
CTCTTATACAAGACAAACATGAATACTATACTAATCCCCATTCCTTTCAGGATTAGGCACCATAA
ACATAGTCTTCTCCTTAGGATACATCATATTGATGCTTTGGATTCGCAAGAAAGCCTTTTTTCCT
ACCAATTTTTGAAAAGTCTAAGTTCATGCGTCAAATGAGACAAACATGGATTCTAGTAATGATCT
TCATTCATTTTGTAATTAGGCACTAGAAACACATTCTCCTCAATAGGATAAATGAT
Found at i:3592417 original size:786 final size:781
Alignment explanation
Indices: 3590771--3592422 Score: 1780
Period size: 785 Copynumber: 2.1 Consensus size: 781
3590761 CTCCTAAATA
* * * ** ** * *
3590771 AAACATAGTCTTCTCATTAGGATACATCATATTGACACTTTGGTTTCGCAAGAAAGGCTTTTTTC
1 AAACATAGTCCTGTCATTAGGATACATCACATTGATGCTTTGGAGTCACAAGAAAGCCTTTTTTC
* *
3590836 TCACCAATTTTTGTAAAGTCTAAGTTTCTATCTCAAATGACACAAACATGGATTCTAGTAATGAT
66 -CACCAATTTTTGAAAAGTCTAAGGTTCTATCTCAAATGACACAAACATGGATTCTAGTAATGAT
** * *
3590901 CTTCAGTCATTTTGTGATTAGCCACTATTAACACATTCTCCTCATTAGGATAAATGATTTTGATG
130 CTTCAGTCATTTTGTGATTAGCCACTAGAAACACATTCTCCTCAATAGGATAAATGATATTGATG
* *
3590966 ATTTTCTTTTATATGGAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAA
195 ATTTTCTTTGATATGGAAATCTTTTCTTTACCCTACTTTCCTTAAAATCAAAGTTCATCCCTTAA
* * * *
3591031 ATAAGACAAGCATCAATTCTCGTAACAGTCTCCATTCCTTTTAAGATTGGGAATCCAAATCACAT
260 ATAAGACAAGCATCAATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACAT
* * * *
3591096 CCCTTCATTAAGAAATATGGCATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCATCGTG
325 CCCTTCATTAAGAAACACGGCATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATG
* * * * * *
3591161 TTTTATAGATTCAAAGTTTATCTCTTATACGAGACAAACTTGAATACTCATACTAATCCCCATTT
390 TTTTATAGAATCAAAGTTTATCACTTATACAAAACAAACTTAAATACTCATACTAATCCCCATTC
* * * * * * *
3591226 TTTTCAGGATTAGGCACCATAAACATTGTCTTCTCCTTAGGATGCATCTTATTGATGCTTTGGTT
455 CTTTCAGCATTAGGAACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTT
* * * * * **
3591291 TTGCAAGAAAGGCTTTTTTCCTACCAATTTTTGTAAAGTCTAAGTTCATGCGTCAAATTAGACGA
520 TTGCAAGAAAGGCTATTTTCCCACCAATTTTTGTAAAGTCCAAGTTCATGCCTCAAATGAGAAAA
* * * * *
3591356 ACATTGATTCTAGTAATGATCTTCATTTATTTTGTAATTAGGCACTATGCACATATTCTCCTAAT
585 ACATTGACTCTAGTAATGATCTACATTCATTTTGTAATTAGGCACTA-GAACACATTCTCC--A-
* * * * * * * *
3591421 TTTGGTAATTGATATTGATGATTTGGTGTCGTAAGAAAAGCTTTTCTTTCGACCGCTTTTGATAG
646 TTAGGAAAATGATATTGATGATTT-GTCTCGTAAGAAAAGCTTTTATTTCGACCGATTTTCATAA
** * * *
3591486 AATCAAAGTTTGTCTCTTATATAAGACAAACATGAATTACTAATCCCCATTCCTTTCAGGATTAG
710 AATCAAAGTTCATCCCTTAAATAAGACAAACATGAATTACTAATCCCCATTCCTTTCAGGACTAG
*
3591551 GCACCAT
775 GAACCAT
** * * * * * *
3591558 AAGTATAGTCTTGTCGTTAGGATACATCATATTGATGCTTTGGATTCGCTAGAAAGCCTTTTTTC
1 AAACATAGTCCTGTCATTAGGATACATCACATTGATGCTTTGGAGTCACAAGAAAGCCTTTTTTC
* * * * * **
3591623 CTACCAATTTTTGAAAAGTCTAGGGTTGTGTCTCAAATGAGACAAACATGGATTTTAGTGGTGAT
66 C-ACCAATTTTTGAAAAGTCTAAGGTTCTATCTCAAATGACACAAACATGGATTCTAGTAATGAT
* *
3591688 CTTCATTCATTTTGTGATTAGGCACTAGAAACACATTCTCCTCAATAGGATAAATGATATTGATG
130 CTTCAGTCATTTTGTGATTAGCCACTAGAAACACATTCTCCTCAATAGGATAAATGATATTGATG
* * * *
3591753 ATTTT-TTTGCT-TGGATATCTTTTCTTTGCCCTACTTTCCTTAAAATCAAAGTTCATTCCTTAA
195 ATTTTCTTTGATATGGAAATCTTTTCTTTACCCTACTTTCCTTAAAATCAAAGTTCATCCCTTAA
*** * * *
3591816 ATAAGATGCGCATCGATTCTCGTAATAGTCTCCATTGCTTTCAAGACTGGGAAGCCAAAACACAT
260 ATAAGACAAGCATCAATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACA-
* **
3591881 TCCCTTCATTAGGATGCACGGCATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCAT
324 TCCCTTCATTAAGAAACACGGCATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCAT
* * *
3591946 -TTTTGATAGAATCAAAGTTTTTCACTTCTATAAAACAAA-TATAAATACTCATACTAATCCCCA
389 GTTTT-ATAGAATCAAAGTTTATCACTTATACAAAACAAACT-TAAATACTCATACTAATCCCCA
* *
3592009 TTCCTTTCTA-CATTAGGAACCATAAACGTAGTCTTCTCATTAGGATACA-CGATATTGATGTTT
452 TTCCTTTC-AGCATTAGGAACCATAAACATAGTCTTCTCATTAGGATACATC-ATATTGATGCTT
* **
3592072 TGGTTTTG-AATGAAAGGC-ATTTTCCCACCAATTTTTTTAAAGTCCAAGTTTGTGCCTCAAATG
515 TGGTTTTGCAA-GAAAGGCTATTTTCCCACCAATTTTTGTAAAGTCCAAGTTCATGCCTCAAATG
* * * *
3592135 AGAAAAAC-TTGGACTCTAGTGATGATCTACGTTCCTTTTGTGATTAGGCA-TA-AACACATTCT
579 AGAAAAACATT-GACTCTAGTAATGATCTACATTCATTTTGTAATTAGGCACTAGAACACATTCT
** * * * *
3592197 CC-TTAGGAAAAAAT-ATATTGATGATTT-TCTTTTACATGGAAATCTTTTATTT-GCCCTATTT
643 CCATTAGG--AAAATGATATTGATGATTTGTCTCGTA-A-GAAAAGCTTTTATTTCGACCGATTT
* * *
3592258 TCCTTAAAATCAAAGTTCATCCCTTAAATAAGA-AAAGTATCGAGTCT-CGTAACAGTCCCCATT
704 T-CATAAAATCAAAGTTCATCCCTTAAATAAGACAAA-CAT-GAAT-TAC-T-A-A-TCCCCATT
*
3592321 CCTTT-TGAGACTAGGAAGCCA-
761 CCTTTCAG-GACTAGGAA-CCAT
* ** *
3592342 AAACATATTCCCT-TCATTAGGATACATGGCATTGATGCTTTGG-GTCACAAGAAAAGCTTTTTT
1 AAACATAGT-CCTGTCATTAGGATACATCACATTGATGCTTTGGAGTCACAAG-AAAGC---CTT
3592405 TTTTCCACCAATTTTTGA
61 TTTTCCACCAATTTTTGA
3592423 TAGAATCAAA
Statistics
Matches: 718, Mismatches: 120, Indels: 55
0.80 0.13 0.06
Matches are distributed among these distances:
777 4 0.01
778 15 0.02
779 51 0.07
780 7 0.01
781 2 0.00
782 11 0.02
783 7 0.01
784 61 0.08
785 190 0.26
786 187 0.26
787 183 0.25
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.37
Consensus pattern (781 bp):
AAACATAGTCCTGTCATTAGGATACATCACATTGATGCTTTGGAGTCACAAGAAAGCCTTTTTTC
CACCAATTTTTGAAAAGTCTAAGGTTCTATCTCAAATGACACAAACATGGATTCTAGTAATGATC
TTCAGTCATTTTGTGATTAGCCACTAGAAACACATTCTCCTCAATAGGATAAATGATATTGATGA
TTTTCTTTGATATGGAAATCTTTTCTTTACCCTACTTTCCTTAAAATCAAAGTTCATCCCTTAAA
TAAGACAAGCATCAATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACATC
CCTTCATTAAGAAACACGGCATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATGT
TTTATAGAATCAAAGTTTATCACTTATACAAAACAAACTTAAATACTCATACTAATCCCCATTCC
TTTCAGCATTAGGAACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTT
TGCAAGAAAGGCTATTTTCCCACCAATTTTTGTAAAGTCCAAGTTCATGCCTCAAATGAGAAAAA
CATTGACTCTAGTAATGATCTACATTCATTTTGTAATTAGGCACTAGAACACATTCTCCATTAGG
AAAATGATATTGATGATTTGTCTCGTAAGAAAAGCTTTTATTTCGACCGATTTTCATAAAATCAA
AGTTCATCCCTTAAATAAGACAAACATGAATTACTAATCCCCATTCCTTTCAGGACTAGGAACCA
T
Found at i:3592865 original size:944 final size:945
Alignment explanation
Indices: 3591477--3593864 Score: 3195
Period size: 944 Copynumber: 2.5 Consensus size: 945
3591467 TTTCGACCGC
3591477 TTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATG-A-AT--TACTAATCCCCATTC
1 TTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATATCATACTAAT-CCCATTC
* * ** *
3591538 CTTTCAGGATTAGGCACCATAAGTATAGTCTTGTCGTTAGGATACATC-ATATTGATGCTTTGGA
65 TTTTCAGGATTAGGAACCATAAACATAGTCTTGTCATTAGGATACA-CGATATTGATG-TTTGGA
* * * * * *
3591602 TTCGCT-AGAAAGCCTTTTTTCCTACCAATTTTTGAAAAGTCTAGGGTTGTGTCTCAAATGAGAC
128 TTTG-TAAGAAAGGC--TTTTCCCACCAATTTTT-AAAAGTCTAAGTTTGTGCCTCAAATGAGAC
* * *
3591666 AAACATGGATTTTAGTGGTGATCTTCATTCATTTTGTGATTAGGCACTAGAAACACATTCTCCTC
189 AAACATGGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTC
* * *
3591731 AATAGGATAAATGATATTGATGA-TTT-TTTTGCTTGGATATCTTTTCTTTGCCCTACTTTCCTT
254 ATTAGGATAAATGATATTGATGATTTTCTTTTGCTTGGAAATCTTTTCTTTGCCTTA-TTTCCTT
* *** *
3591794 AAAATCAAAGTTCATTCCTTAAATAAGATGCGCATCGATTCTCGTAATAGTCTCCATTGCTTTCA
318 AAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCCTTTCA
* *
3591859 AGACTGGGAAGCCAAAACACATTCCCTTCATTAGGATGCACGGCATTGATGCTTTGGTGTCGCAA
383 AGACTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAA
* * * *
3591924 GAAAAGGTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTTTCACTTCTATAAAACAAA-TAT
448 GAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTATATAAAACAAACT-T
* * *
3591988 AAATACTCATACTAATCCCCATTCCTTTCTACATTAGGAACCATAAACGTAGTCTTCTCATTAGG
512 AAATACTCATACTAATCCCCATTCCTTTATACATTAGGAACCATAAACATAGTCTTATCATTAGG
*
3592053 ATACACGATATTGATGTTTTGGTTTTG-AATGAAAGGCATTTTCCCACCAATTTTTTTAAAGTCC
577 ATACACGATATTGATGTTTTGGTTTTGTAA-GAAAGGCATTTTCCCACCAATTTTTGTAAAGTCC
* * * *
3592117 AAGTTTGTGCCTCAAATGAGAAAAACTTGGACTCTAGTGATGATCTACGTTCCTTTTGTGATTAG
641 AACTTTGTGCCTCAAATGAGAAAAACTTGGACTCTAGTGATGATCTACATTCATTTTGTAATTAG
*
3592182 G-C-ATAAACACATTCTCCT-T-AGGAAAAAAT-ATATTGATGA-TTTTCTTTTACATGGAAATC
706 GACTATAAACACATTCTCCTATAAGG-AAAAATGATATTGATGATTTTTCTTTTAAATGGAAATC
* **
3592241 TTTTATTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGAAAAGTATCGAGTCTC
770 TTTTATTCGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGAAAACCATCGAGTCTC
* *
3592306 GTAACAGTCCCCATTCCTTTTGAGACTAGGAAGCCAAAACATATTCCCTTCATTAGGATACATGG
835 GTAACAGTCCCCATTCCTTTCGAGACTAGGAAGCCAAAACACATTCCCTTCATTAGGATACATGG
3592371 CATTGATGCTTTGGGTCACAAGAAAAGCTTTTTTTTTTCCACCAAT
900 CATTGATGCTTTGGGTCACAAGAAAAGCTTTTTTTTTTCCACCAAT
*
3592417 TTTTGATAGAATCAAAGTTTGTCTCTTATATAAGATAAACATGAATACTCATACTAATCGCCATT
1 TTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATA-TCATACTAATC-CCATT
** *
3592482 CTTTTCTA-GATTAGGAACCATAAACGCAGTCTTATCATTAGGATACACGATATTGATGTTTTGG
64 CTTTTC-AGGATTAGGAACCATAAACATAGTCTTGTCATTAGGATACACGATATTGATG-TTTGG
* * * *
3592546 CTTTGTAAGAAAGGCATTTTCCCACCAATTTCTACGAAGTCTAAGTTTGTGGCTCAAATGAGACA
127 ATTTGTAAGAAAGGC-TTTTCCCACCAATTTTTA-AAAGTCTAAGTTTGTGCCTCAAATGAGACA
* * *
3592611 AACTTGGATTCTAGTGATGATCTCCATTCATTTTGT-ATTAAGCACTATAAACACATTCTCCTCA
190 AACATGGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCA
*
3592675 TTAGGATAAACT-ATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTGTCCTT
255 TTAGGATAAA-TGATATTGATGATTTTCTTTTGCTTGGAAATCTTTTCTTTGCCTTATT-TCCTT
* *
3592739 AAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAATAGTC-CTATTCCTTTCA
318 AAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCCTTTCA
* * * * *
3592803 AGTCTGGGAAGCCAAATCACATTTCCTTCACTAGGATAAATGGCATTGATGCTTTGGTGTCGCAA
383 AGACTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAA
* * * * * * *
3592868 AAAAAGCTTTTCCTTCCACCGTTTTGGATGGAATCAAAGTTTGTCTCTTATATAAGACAAACTTG
448 GAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTATATAAAACAAACTTA
* **
3592933 AATACTCATACTAATCCCCATTCTTTTATTGATTAGGAACCATAAACATAGTCTTATCATTAGGA
513 AATACTCATACTAATCCCCATTCCTTTATACATTAGGAACCATAAACATAGTCTTATCATTAGGA
* *
3592998 TACACGATATTGATGTTTTGGTTTTGTAAGAGAGGCATTTTCCCACCAATTTTTGTAAAGTCTAA
578 TACACGATATTGATGTTTTGGTTTTGTAAGAAAGGCATTTTCCCACCAATTTTTGTAAAGTCCAA
* * *
3593063 CTTTGTGCCTCAAATGAGACAAACTTGGATTCTAGTGATGATCTCCATTCATTTTGTAATTAGGT
643 CTTTGTGCCTCAAATGAGAAAAACTTGGACTCTAGTGATGATCTACATTCATTTTGTAATTAGG-
* * *
3593128 ACTATAAACACATTCTCCTCATAAGGATAAATGATATTGATGATTTTTTTTTTAAATTGAAATCT
707 ACTATAAACACATTCTCCT-ATAAGGAAAAATGATATTGATGATTTTTCTTTTAAATGGAAATCT
* ** * * * *
3593193 TTTCTTCGCCCTATTTTCCTTAAAATCAAAGTTCATTTCTTAAATAAGACAACCCTCGATTCTTG
771 TTTATTCGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGAAAACCATCGAGTCTCG
* * *
3593258 TAACAGTCTCCATTCCTTTCGAGACTGGGAAGTCAAAACACATTCCCTTCATTAGGATACATGGC
836 TAACAGTCCCCATTCCTTTCGAGACTAGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGC
3593323 ATTGATGCTTTGGGTCACAAGAAAAGCTTTTTTTTTTCCACCAAT
901 ATTGATGCTTTGGGTCACAAGAAAAGCTTTTTTTTTTCCACCAAT
* * *
3593368 TTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATTATTAGTCATACTAATCCTTATT
1 TTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATA-TCATACTAATCC-CATT
* * * * *
3593433 -TTTTCCAGGATTAGGCAA-TATAAACATATTCTTGTCATTAGTATACACGATATTGATGCTTCG
64 CTTTT-CAGGATTAGG-AACCATAAACATAGTCTTGTCATTAGGATACACGATATTGATGTTTGG
* * * ** **
3593496 ATTTCGCAAGGAAGGCTTCCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAACAAGA
127 ATTT-GTAAGAAAGGCTT--TTCCCACCAATTTTT-AAAAGTCTAAGTTTGTGCCTCAAATGAGA
** * * *
3593561 CAAACAAAGATTCTAGTAATGATCTTCATTCATTTTTTGATTAGGCACTATAAACATATTCTCCT
188 CAAACATGGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCT
* * *
3593626 CATTAGTG-TAAATGATATTGATGATTTTCTTTTTCTTGGAAATCTTTTCTTTACCTTATTTTCG
253 CATTAG-GATAAATGATATTGATGATTTTCTTTTGCTTGGAAATCTTTTCTTTGCCTTA-TTTCC
* * * * * * *
3593690 TCAAAATCAAAGTTAATCTCTCAAATAAGACAAGTC-TCGATTCTCGCAACAATCTCCATTCCTT
316 TTAAAATCAAAGTTCATCCCTTAAATAAGACAAG-CATCGATTCTCGTAATAGTCTCCATTCCTT
** *
3593754 TCAAGACTACGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGACGCTTTGGTGTCG
380 TCAAGACTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCG
* * *
3593819 CAAGAAAAGCTTTTCTTTCCTCCGTTTTTTATAGAATAAAAGTTTG
445 CAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTG
3593865 CCTCTGTAGA
Statistics
Matches: 1260, Mismatches: 150, Indels: 62
0.86 0.10 0.04
Matches are distributed among these distances:
940 42 0.03
941 1 0.00
942 1 0.00
943 47 0.04
944 377 0.30
945 154 0.12
946 2 0.00
947 16 0.01
949 6 0.00
950 27 0.02
951 287 0.23
952 71 0.06
953 121 0.10
954 108 0.09
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.36
Consensus pattern (945 bp):
TTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATATCATACTAATCCCATTCT
TTTCAGGATTAGGAACCATAAACATAGTCTTGTCATTAGGATACACGATATTGATGTTTGGATTT
GTAAGAAAGGCTTTTCCCACCAATTTTTAAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATG
GATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGA
TAAATGATATTGATGATTTTCTTTTGCTTGGAAATCTTTTCTTTGCCTTATTTCCTTAAAATCAA
AGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCCTTTCAAGACTGGG
AAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCT
TTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTATATAAAACAAACTTAAATACTCA
TACTAATCCCCATTCCTTTATACATTAGGAACCATAAACATAGTCTTATCATTAGGATACACGAT
ATTGATGTTTTGGTTTTGTAAGAAAGGCATTTTCCCACCAATTTTTGTAAAGTCCAACTTTGTGC
CTCAAATGAGAAAAACTTGGACTCTAGTGATGATCTACATTCATTTTGTAATTAGGACTATAAAC
ACATTCTCCTATAAGGAAAAATGATATTGATGATTTTTCTTTTAAATGGAAATCTTTTATTCGCC
CTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGAAAACCATCGAGTCTCGTAACAGTCCC
CATTCCTTTCGAGACTAGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTT
TGGGTCACAAGAAAAGCTTTTTTTTTTCCACCAAT
Found at i:3592989 original size:473 final size:475
Alignment explanation
Indices: 3591434--3593869 Score: 2956
Period size: 473 Copynumber: 5.1 Consensus size: 475
3591424 GGTAATTGAT
* * * **
3591434 ATTGATGATTTGGTGTCGTAAGAAAAGCTTTTCTTTCGACCGCTTTTGATAGAATCAAAGTTTGT
1 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGT
* * * *
3591499 CTCTTATATAAGACAAACATG-A-A-T--TACTAATCCCCATTCCTTTCA-GGATTAGGCACCAT
66 CTCTTATATAAGACAAACTTGAATACTCATACTAATCCCCATT-CTTTTATAGATTAGGAACCAT
** * * * * * *
3591558 AAGTATAGTCTTGTCGTTAGGATACATC-ATATTGATGCTTTGGATTCGCT-AGAAAGCCTTTTT
130 AAACATAGTCTTATCATTAGGATACA-CGATATTGATGTTTTGGATTTG-TAAGAAAGGC-ATTT
* * * * * * *
3591621 TCCTACCAATTTTTGA-AAAGTCTAGGGTTGTGTCTCAAATGAGACAAACATGGATTTTAGTGGT
192 TCCCACCAATTTTT-ATAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACTTGGATTCTAGTGAT
* * *
3591685 GATCTTCATTCATTTTGTGATTAGGCACTAGAAACACATTCTCCTCAATAGGATAAATGATATTG
256 GATCTCCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTG
* * * * *
3591750 ATGA-TTT-TTTTGCTTGGATATCTTTTCTTTGCCCTACTTTCCTTAAAATCAAAGTTCATTCCT
321 ATGATTTTCTTTTACATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT
*** * *
3591813 TAAATAAGATGCGCATCGATTCTCGTAATAGTCTCCATTGCTTTCAAGACTGGGAAGCCAAAACA
386 TAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACA
* *
3591878 CATTCCCTTCATTAGGATGCACGGC
451 CATTCCCTTCATTAGGATACATGGC
* *
3591903 ATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTTT
1 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGT
* * * * * * *
3591968 CACTTCTATAAAACAAA-TATAAATACTCATACTAATCCCCATTCCTTTCTACATTAGGAACCAT
66 CTCTTATATAAGACAAACT-TGAATACTCATACTAATCCCCATTCTTTTATAGATTAGGAACCAT
* * *
3592032 AAACGTAGTCTTCTCATTAGGATACACGATATTGATGTTTTGGTTTTG-AATGAAAGGCATTTTC
130 AAACATAGTCTTATCATTAGGATACACGATATTGATGTTTTGGATTTGTAA-GAAAGGCATTTTC
* * * *
3592096 CCACCAATTTTTTTAAAGTCCAAGTTTGTGCCTCAAATGAGAAAAACTTGGACTCTAGTGATGAT
194 CCACCAATTTTTATAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACTTGGATTCTAGTGATGAT
* * * *
3592161 CTACGTTCCTTTTGTGATTAGG--C-ATAAACACATTCT-C-C-TTAGGAAAAAAT-ATATTGAT
259 CTCCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGG-ATAAATGATATTGAT
*
3592219 GATTTTCTTTTACATGGAAATCTTTTATTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTA
323 GATTTTCTTTTACATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTA
* * * * ** * *
3592284 AATAAGAAAAGTATCGAGTCTCGTAACAGTCCCCATTCCTTTTGAGACTAGGAAGCCAAAACATA
388 AATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACA
3592349 TTCCCTTCATTAGGATACATGGC
453 TTCCCTTCATTAGGATACATGGC
* *
3592372 ATTGATGCTTTGG-GTCACAAGAAAAGCTTTTTTTTTTCCACCAATTTTTGATAGAATCAAAGTT
1 ATTGATGCTTTGGTGTCGCAAGAAAAGC--TTTTCTTTCCACC-ATTTTTGATAGAATCAAAGTT
* * * *
3592436 TGTCTCTTATATAAGATAAACATGAATACTCATACTAATCGCCATTCTTTTCTAGATTAGGAACC
63 TGTCTCTTATATAAGACAAACTTGAATACTCATACTAATCCCCATTCTTTTATAGATTAGGAACC
** *
3592501 ATAAACGCAGTCTTATCATTAGGATACACGATATTGATGTTTTGGCTTTGTAAGAAAGGCATTTT
128 ATAAACATAGTCTTATCATTAGGATACACGATATTGATGTTTTGGATTTGTAAGAAAGGCATTTT
* ** *
3592566 CCCACCAATTTCTACGAAGTCTAAGTTTGTGGCTCAAATGAGACAAACTTGGATTCTAGTGATGA
193 CCCACCAATTTTTATAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACTTGGATTCTAGTGATGA
*
3592631 TCTCCATTCATTTTGT-ATTAAGCACTATAAACACATTCTCCTCATTAGGATAAACT-ATATTGA
258 TCTCCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAA-TGATATTGA
* * *
3592694 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTGTCCTTAAAATCAAAGTTCATCCCTT
322 TGATTTTCTTTTACATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTT
* * * * *
3592759 AAATAAGACAAGCATCGATTCTCATAATAGTC-CTATTCCTTTCAAGTCTGGGAAGCCAAATCAC
387 AAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACAC
* * *
3592823 ATTTCCTTCACTAGGATAAATGGC
452 ATTCCCTTCATTAGGATACATGGC
* * * * *
3592847 ATTGATGCTTTGGTGTCGCAAAAAAAGCTTTTCCTTCCACCGTTTTGGATGGAATCAAAGTTTGT
1 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGT
*
3592912 CTCTTATATAAGACAAACTTGAATACTCATACTAATCCCCATTCTTTTATTGATTAGGAACCATA
66 CTCTTATATAAGACAAACTTGAATACTCATACTAATCCCCATTCTTTTATAGATTAGGAACCATA
* *
3592977 AACATAGTCTTATCATTAGGATACACGATATTGATGTTTTGGTTTTGTAAGAGAGGCATTTTCCC
131 AACATAGTCTTATCATTAGGATACACGATATTGATGTTTTGGATTTGTAAGAAAGGCATTTTCCC
* *
3593042 ACCAATTTTTGTAAAGTCTAACTTTGTGCCTCAAATGAGACAAACTTGGATTCTAGTGATGATCT
196 ACCAATTTTTATAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACTTGGATTCTAGTGATGATCT
* * *
3593107 CCATTCATTTTGTAATTAGGTACTATAAACACATTCTCCTCATAAGGATAAATGATATTGATGAT
261 CCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGA-
* * * * **
3593172 TTTTTTTTTAAATTGAAATCTTTTCTTCGCCCTATTTTCCTTAAAATCAAAGTTCATTTCTTAAA
325 TTTTCTTTTACATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAA
* * * * *
3593237 TAAGACAACCCTCGATTCTTGTAACAGTCTCCATTCCTTTCGAGACTGGGAAGTCAAAACACATT
390 TAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACATT
3593302 CCCTTCATTAGGATACATGGC
455 CCCTTCATTAGGATACATGGC
* *
3593323 ATTGATGCTTTGG-GTCACAAGAAAAGCTTTTTTTTTTCCACCAATTTTTGATAGAATCAAAGTT
1 ATTGATGCTTTGGTGTCGCAAGAAAAGC--TTTTCTTTCCACC-ATTTTTGATAGAATCAAAGTT
* * ** **
3593387 TGTCTCTTATATAAGACAAACATT-ATTAGTCATACTAATCCTTATT-TTTTCCAGGATTAGGCA
63 TGTCTCTTATATAAGACAAAC-TTGAATACTCATACTAATCCCCATTCTTTTATA-GATTAGG-A
* * * * * * * *
3593450 A-TATAAACATATTCTTGTCATTAGTATACACGATATTGATG-CTTCGATTTCGCAAGGAAGGC-
125 ACCATAAACATAGTCTTATCATTAGGATACACGATATTGATGTTTTGGATTT-GTAAGAAAGGCA
* ** ** ***
3593512 TTCCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAACAAGACAAACAAAGATTCTAG
189 TT--TTCCCACCAATTTTTATAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACTTGGATTCTAG
* * * *
3593577 TAATGATCTTCATTCATTTTTTGATTAGGCACTATAAACATATTCTCCTCATTAGTG-TAAATGA
252 TGATGATCTCCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAG-GATAAATGA
* * * * * * *
3593641 TATTGATGATTTTCTTTTTCTTGGAAATCTTTTCTTTACCTTATTTTCGTCAAAATCAAAGTTAA
316 TATTGATGATTTTCTTTTACATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCA
* * * * **
3593706 TCTCTCAAATAAGACAAGTC-TCGATTCTCGCAACAATCTCCATTCCTTTCAAGACTACGAAGCC
381 TCCCTTAAATAAGACAAG-CATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCC
3593770 AAAACACATTCCCTTCATTAGGATACATGGC
445 AAAACACATTCCCTTCATTAGGATACATGGC
* * * * * *
3593801 ATTGACGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCTCCGTTTTTTATAGAATAAAAGTTTGC
1 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGT
3593866 CTCT
66 CTCT
3593870 GTAGACACCT
Statistics
Matches: 1696, Mismatches: 228, Indels: 79
0.85 0.11 0.04
Matches are distributed among these distances:
467 14 0.01
468 21 0.01
469 213 0.13
470 30 0.02
471 206 0.12
472 4 0.00
473 310 0.18
474 126 0.07
475 156 0.09
476 198 0.12
477 34 0.02
478 248 0.15
479 135 0.08
480 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.36
Consensus pattern (475 bp):
ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGT
CTCTTATATAAGACAAACTTGAATACTCATACTAATCCCCATTCTTTTATAGATTAGGAACCATA
AACATAGTCTTATCATTAGGATACACGATATTGATGTTTTGGATTTGTAAGAAAGGCATTTTCCC
ACCAATTTTTATAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACTTGGATTCTAGTGATGATCT
CCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGAT
TTTCTTTTACATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAT
AAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACATTC
CCTTCATTAGGATACATGGC
Found at i:3594265 original size:13 final size:13
Alignment explanation
Indices: 3594247--3594271 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3594237 GCCAAGAAAA
3594247 TGTATCGATACAT
1 TGTATCGATACAT
3594260 TGTATCGATACA
1 TGTATCGATACA
3594272 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3598343 original size:475 final size:472
Alignment explanation
Indices: 3597446--3598855 Score: 1599
Period size: 475 Copynumber: 3.0 Consensus size: 472
3597436 CCTATGTAAG
* * * * **
3597446 ACAAACATGAATACCCATACTAA-CCCCTAATCTTTTTAGGATTAGACAC-CAT-AACGTAGTCT
1 ACAAACATGAATACTCATACTAATCCCC-AATCTTTTCAAGATTAGGCACACATAAACAAAGTCT
* * * *
3597508 TTTTACTAGGATACATCATATTGACGCTTTGGTTTTGCAAGAAAGGCTTTT-TTCCCACCAATTT
65 TCTCACTAGGATACATCATATTGAAGCTTTGGTTTTGCAAGAAAGG-TTTTCTTCCCACTAATTT
* * **
3597572 TTATAAAGTCTAAGTTCGTCCCTCAAAATGAGATTGACATGGATTCTAGTAATGATCTTCATTCA
129 TTGTAAAGTCTAAGTTCGTGCCTC-AAATGAGACAGACATGGATTCTAGTAATGATCTTCATTCA
* *
3597637 TTTTGTGACTAGGCACAGT-AACACATTCTCCTTAATAGGATAAATGATATTGACGATTTTCTTT
193 TTTTGTGATTAGGCACA-TAAACACATTCTCCTCAATAGGATAAATGATATTGACGATTTTCTTT
* * *
3597701 TGCATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAACCAAAATTCATCCCCTAAATAAGACAA
257 TGCATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATCCTC-AAATAAGACAA
* ** * * *
3597766 GCATCGATTCTTATAACAGTCTCCGGTCTTTTAAAGATTTGGAAGCCATAACACATTCCCTT-TC
321 GCATCGATTC-TGTAACAGTCTCCATTCTTTTCAAGA-TTGGAAGCCAAAACA-ATTCCATTCT-
* * * * *
3597830 TTAGGATACGTGACATTAATGCGTTAGG-GTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGAT
382 TTAGGATACATGGCATTGATGC-TTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGAT
* * **
3597894 AGAATCAAAGTTTGCCTTTTAAATATG
446 AGAATCAAAGTTTGCCTCTCAAATAAA
* ** * * * *
3597921 ACAAACATGAATAGTCATACTAATCCTTATTCTTTTCAAGATTAGGCA-ATATAAGCAAATTC-T
1 ACAAACATGAATACTCATACTAATCCCCAATCTTTTCAAGATTAGGCACACATAAACAAAGTCTT
* * **
3597984 CGTCATTAGGATACATGATATTGAAGCTTTGGTTTCACAAGAAAGGTTTTCTTCCCACTAATTTT
66 C-TCACTAGGATACATCATATTGAAGCTTTGGTTTTGCAAGAAAGGTTTTCTTCCCACTAATTTT
* * * * * * *
3598049 GGTAAAGTCTATGTTTGTGCCTCCAACGAGACAAACATGGATTCTCGTAATGATCTTCATTCATT
130 TGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAGACATGGATTCTAGTAATGATCTTCATTCATT
* * * * * * *
3598114 TTGTGTTTAGGCATATAAACAAAATCTCCTCAATAGGGTAAACGATATTGATGATTTTCTTTTGC
195 TTGTGATTAGGCACATAAACACATTCTCCTCAATAGGATAAATGATATTGACGATTTTCTTTTGC
*
3598179 TTGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATCTCTCAAATAAGACAAGCA
260 ATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATC-CTCAAATAAGACAAGCA
* *
3598244 TCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGCGAAGCCAAAACATATTCCATTCTTTAG
324 TCGATTCT-GTAACAGTCTCCATTCTTTTCAAGATTG-GAAGCCAAAACA-ATTCCATTCTTTAG
* * *
3598309 GATACATGGTATTGATGCTTTGGTGTGGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT
386 GATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAAT
** *
3598374 CAAAGTTTATCTCTCATATAAA
451 CAAAGTTTGCCTCTCAAATAAA
* * * **
3598396 ACAAACATTAATACTCATACTAATCCCCAATCTTTTCAGGATTAGGCACCCATAAACGTAGTCTT
1 ACAAACATGAATACTCATACTAATCCCCAATCTTTTCAAGATTAGGCACACATAAACAAAGTCTT
* * * * *
3598461 CTTACTAGGATGCATCATATTGATGCTTTGGTTTTGCAAGAAAGGCTTCCTTCCCACTAATTTTT
66 CTCACTAGGATACATCATATTGAAGCTTTGGTTTTGCAAGAAAGGTTTTCTTCCCACTAATTTTT
* * * *
3598526 GTTAAGTCTAAGTTCGTGTCTCAAATGAGACAGACGTGGATTCTAGCAATGATCTTCATTCATTT
131 GTAAAGTCTAAGTTCGTGCCTCAAATGAGACAGACATGGATTCTAGTAATGATCTTCATTCATTT
* * * * * *
3598591 TATGATTAGGCACCATAAACACATTCTCTTCATTAGGATAAATGATACTGACAAGTTTCTTTTGC
196 TGTGATTAGGCA-CATAAACACATTCTCCTCAATAGGATAAATGATATTGACGATTTTCTTTTGC
* * * * * * *
3598656 ATGCAAGTCTTTTTTTTGCCCTATTTTCCCTT-AATTCAAAGTTCATACCTTAAATAAGATAAGC
260 ATGAAAATCTTTTCTTTACCCTATTTT-CCTTAAAATCAAAGTTCAT-CCTCAAATAAGACAAGC
* * *
3598720 A-CTGATTCATGTAACAG---CCAGTTTTTTTCAAGATTGGGAAGCCAAAGC-ATTCCATTCATT
323 ATC-GATTC-TGTAACAGTCTCCA-TTCTTTTCAAGATT-GGAAGCCAAAACAATTCCATTCTTT
* * *
3598780 AGGATTCATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTTCATCGTTTTTGATAGA
384 AGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGA
*
3598845 ATGAAAGTTTG
449 ATCAAAGTTTG
3598856 GTTTTGCAAG
Statistics
Matches: 780, Mismatches: 135, Indels: 42
0.82 0.14 0.04
Matches are distributed among these distances:
473 79 0.10
474 11 0.01
475 371 0.48
476 208 0.27
477 105 0.13
478 6 0.01
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (472 bp):
ACAAACATGAATACTCATACTAATCCCCAATCTTTTCAAGATTAGGCACACATAAACAAAGTCTT
CTCACTAGGATACATCATATTGAAGCTTTGGTTTTGCAAGAAAGGTTTTCTTCCCACTAATTTTT
GTAAAGTCTAAGTTCGTGCCTCAAATGAGACAGACATGGATTCTAGTAATGATCTTCATTCATTT
TGTGATTAGGCACATAAACACATTCTCCTCAATAGGATAAATGATATTGACGATTTTCTTTTGCA
TGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATCCTCAAATAAGACAAGCATC
GATTCTGTAACAGTCTCCATTCTTTTCAAGATTGGAAGCCAAAACAATTCCATTCTTTAGGATAC
ATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAG
TTTGCCTCTCAAATAAA
Found at i:3600574 original size:476 final size:476
Alignment explanation
Indices: 3598852--3625889 Score: 15324
Period size: 476 Copynumber: 56.3 Consensus size: 476
3598842 AGAATGAAAG
* *
3598852 TTTGGTTTTGCAAGAAAGGCTTTTTTTCCCACCAATTTTTGTAAATTTTAAGTTCGTGCCTCAAA
1 TTTGGTTTTGCAAGAAAGGC-TTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAA
* * *
3598917 TGAGACAGACGTGGATTCTAGTAATGATCTTCATTCATTTTGTGACTAGGCA-TA-ATAACACAT
65 TGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA-AACACAT
* * * *
3598980 TCTCCTTATTAGGATAAATGATATTGACGATTTTCTTTTGCATGAAAATCATTTCTTTGCCCTAT
129 TCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTAT
* * * * * * * * **
3599045 TTTCCTTAAAGTCAAAATTCATCCCCTAAATAAGACAAGCATTGTTTCTTGGAACAGTTTTTATT
194 TTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATT
* * * * * *
3599110 CTTTTAAACATTTGGAAGCCAAAACACATTCCCTTCCTTAGGATACGTGACATTGATGCTTTGGT
259 CTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGT
* * *
3599175 GTTGCAAGAAATG-TTTTACTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGA
324 GTCGCAAGAAAAGCTTTT-CTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGA
* ** * * * * * * *
3599239 CAATCAAGAATAGTC---AT--TCCGCATTCTTTTTAGGAATAAGCACCACAGACATAGTCTTCT
388 CAAACATTAATACTCATAATAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCT
* * *
3599299 CATTAGGATACATGATATTGATGT
453 TATTAGGATACATCATATTGATGC
** * * * * **
3599323 TTTGGTTTCACAAGACAGTCCTTTTTCCCACCAATTTTTGTAAAGTTTAAGTTAATGCCTCAAAT
1 TTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* * * *
3599388 GAGA-AAGACATGGATTCTAGTAATGATCTTCATTCATTTTCTGATTAGGGACAATAAACACGTT
66 GAGACAA-ACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
* * * * * * * * *
3599452 CTCTTCATTATGATAAATGATATTTACGATTTTTTTTTGCTTGAAAATCTTTTTTTTGCCTTATT
130 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATT
* * * ** *
3599517 TTCCTTAAAATCAAAGTTCATCCCCTAAAAAAGATAAGCATCGATTCTCAAAACAGTCTCTATTC
195 TTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTC
* * * * * *
3599582 TTTTCAAGATTTGGAAGCCAAAACACATTCCCTTCCTTATGATACGTGACATTGATGCTTTGGGG
260 TTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTG
* * *
3599647 TCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT-AAAGTTTGTCTCTTAAAAAAGACA
325 TCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACA
* * * * * * ** * * *
3599711 AACATGAATAGTCATACTAATCCCTATTCATTTCAAGATTAGGCAATATAAGCATATTC-TCGTC
390 AACATTAATACTCATAATAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTC-TT
* *
3599775 ATTAGGATACATGATATTGAAGC
454 ATTAGGATACATCATATTGATGC
* * * * * *
3599798 TTTGGTTTCGCAAGAAAGGCTTTTTTCCCACTAATTTTGGTAAAGTCTATGTTTGTGCCTCTAAT
1 TTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* * * *
3599863 GAGATAAACATGGATTCTCGTAATGATCTTCATTCATTTTGT-ATTTAGGCA-TATAAACATAAT
66 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGA-TTAGGCACTATAAACACATT
* * * * *
3599926 CTCCTCAATAGGGTAAATGATATTGATGATTTTCTTTTGCTTGAAAATCTTTTCTTTACCCTATT
130 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATT
* * *
3599991 TTCCTTAAGATCGAAGTTCATCTCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTC
195 TTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTC
* * * ** * * * * *
3600056 CTTTCAGGACTACGTAGCCAAAACATATTCCCTTCTTTAGGATACATGGCACTGATGCGTTGGTG
260 TTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTG
* * * * *
3600121 ACGTAAGAAAAGCTTTTCTTTCCCCCATTTTTGATAGAATCAAAGTTTGTCTCTCATATAAAACA
325 TCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACA
* **
3600186 AACATTAATACTCATAATAATCCCAAACCTTTTCAGGATTAGGCACCCATAAACATAGTCTTCTT
390 AACATTAATACTCATAATAATCCCCATTCTTTTCAGGATTAGGCA-CCATAAACATAGTCTTCTT
* *
3600251 ACTAGGATGCATCATATTGATGC
454 ATTAGGATACATCATATTGATGC
** *
3600274 TTTGGTTTTGCAAGAAAGGCTTCCTTCCCACCAATTTTTGTTAAGTCTAAGTTCGTGCCTCAAAT
1 TTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* * * ** *
3600339 AAGACAGACGTGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGATACCATAAACACATTC
66 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* ** *
3600404 TCCTCATTAGGATAAATGATACTGACAAGTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTT
131 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTT
* * * * *
3600469 TCCCTT-AATTCAACGTTCATCCCTTAAATAAGATAAGC-GCTGATTCCTTGTAACAGTCT-CAG
196 T-CCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATC-GATT-CTCGTAACAGTCTCCA-
* *
3600531 TTCTTTTCAAGATTGGGAAGCC-AAA-ACATTCCATTCATTAGGATTCATGGCATTGATGCTTTG
257 TTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTG
* * *
3600594 GTGTCGCAAGAAAAGCTTTTCTTTTCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTATATAAG
322 GTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAG
* *
3600659 ACAAACATTAATACTCATACTAATCCCCAATCTTTTCAGGATTAGGCACCATAAACATAGTCTTC
387 ACAAACATTAATACTCATAATAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTC
* * * *
3600724 TTACTAAGATACATTATATTGATGT
452 TTATTAGGATACATCATATTGATGC
* * ** * *
3600749 TTTGGTTTTGTAAGAAAGGC-ATTTTCTTACCAATTTTTGTAAAGTCTAAGTTTGTGCCTTAAAT
1 TTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* * * * *
3600813 GAGACAAACATGGTTTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCCCTATAAACGCACTC
66 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* * * * ** *
3600878 TCTTCATTAAGATAAATGATATTGATGATTTACTTTTGGATAAAAATCTTTTCTTTGCCTTATTT
131 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTT
*
3600943 TCCTTAAAATCAAAATTCATCTCC-TAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTC
196 TCCTTAAAATCAAAGTTCATC-CCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTC
* * *
3601007 CTTTCAAGACTGGGAAGCCAAAACATATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTG
260 TTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTG
** * * *
3601072 TCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTTATAGAATCAAAGTTCGTCTCTTATATAAGGCA
325 TCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACA
* **
3601137 AACAATAATACTCATACGAATCCCCATT-TTTTCAGGATTAGGCACCATAAACATAGTCTTCTTA
390 AACATTAATACTCATAATAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTA
* *
3601201 CTAGGATACATCATATTGAAGC
455 TTAGGATACATCATATTGATGC
* * * * * * * *
3601223 TTTTGTTTTTCAGGAAGGGCTTTTTTCCCATCAATTATTGTAAAGTC-ATGTTCATGCCTCAAAT
1 TTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* * * * * *
3601287 TAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTGGTAATTAGGCACTAGAAACATATTC
66 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* * * * * *
3601352 GCCTTATTAGGGTAAATGATATTGATGATTTCCTTTTGCTTGGAAATCTTTTCTTTGCCTTATTT
131 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTT
** * * *
3601417 TCCTTAAAATCAAAGTTCATCTATTAAAAAAGACAAGCATTGATTCTTGTAACAGTCTCCATTCT
196 TCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCT
* * * * *
3601482 TTTCAAGACTAGGCAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCCTTAGTGT
261 TTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGT
** * * * *
3601547 CGCAAGAAAAGCTTTTCTTTCTGTCGA-TTTTGATACAATCAAACTTTGTCTCTTTTATAAGACA
326 CGCAAGAAAAGCTTTTCTTTC-CACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACA
* * * *
3601611 AACATGAATACTCATACTAATCCCCAATCTTTTCAGGACTAGGCACCATAAACATAGTCTTCTTA
390 AACATTAATACTCATAATAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTA
*
3601676 CTAGGATACATCATATTGATGC
455 TTAGGATACATCATATTGATGC
* * * * *
3601698 TTTGGTTTTGCAAGAAAGACTTTTTTCCCACCAACTTTTGTGAAGTCTAAGCTCGCGCCTCAAAT
1 TTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* * *
3601763 GTGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTGTGATTAGGCACAATAAACACATTC
66 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* ** * * *
3601828 TCCTCCTTAGGATAAATGATATTGACAATTTTTTTTTGCATGAAAATCTTTTCTTTGCCTTATTT
131 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTT
* * * * * * *
3601893 TCCTTAAAATTAAAGCTCATCCCCTAAATAAGATAAGCATTGATTCTCGAAAGAGTCTCCATTCT
196 TCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCT
* * * * * * * ** *
3601958 TTTAAAGATTTGGAAGTCAAAACACGTTCCCTTCCTTAAGATACGTCACATTGATACTTTGGTGT
261 TTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGT
* * * * * * *
3602023 TGCAAGAAAAGCTTTACTTTCCACAAGTTTTGATAGAGTCAAAGTTTGCCTTTTATATAAGACAA
326 CGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAA
** * * * ** * * *
3602088 ACAAGAATAGTCATACTAACCCCCATTCTTTTCAGGAACAGGCACCACATACATAGTCTTCTCAT
391 ACATTAATACTCATAATAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTAT
* * *
3602153 TGGGATACA-CA-ATATCATTGT
456 TAGGATACATCATAT-TGA-TGC
** * * * * * *
3602174 TTTGGTTTCACAAGACAGTCCTTTTTCCCACCAATTTTTGTAAAGTCTAAGCTCATGCCTTAAAT
1 TTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* *
3602239 GAGACAGACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACAATAAACACATTC
66 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* ** * * *
3602304 TCCTCATTAGGATAAATGATATTGGTGATTTTCTTTCACATGAAAAACTTTTTTTTG-CCTCA--
131 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCT-ATT
* * * * * *
3602366 TTCCTTAAAATCAAAGTTCATCCCCTAAAAAAGATAAGCATCAATTCTCGAAACCGTCTCCATTC
195 TTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTC
* * * ** * *
3602431 TTTTCAAGATTTGGAAGCCAAAACCCATTCCCTTCCTTAGGATATGTGACATTGATGCTTTGGGG
260 TTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTG
* ** * * *
3602496 TAGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATATGACA
325 TCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACA
* * * * * * ** * * * *
3602561 AACATGAATAGTGATACTAATCCCTATTCTTTTCAAGATTAGGCAATATAAGCATATTCTTGTCA
390 AACATTAATACTCATAATAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTA
** *
3602626 TTAGGATACAAGATATTGAAGC
455 TTAGGATACATCATATTGATGC
* * * *
3602648 TTTGGTTTCGCAAGAAAAGCTTTTTTCCCACAAATTTTGGTAAAGTCTAAGTTCGTGTGCCTCAA
1 TTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTC--GTGCCTCAA
* * *
3602713 ATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGTTTAGGCAC-ATAAACATAT
64 ATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAT
* * * * *
3602777 TATCCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCTTGAAAATCTTTTCTTTACCCTAT
129 TCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTAT
* * * *
3602842 TTTCCTTAAAATCAAAGTTCATCTCTTAAATAAGACAAGCAACGATTCTCGTAATAATCTCCATT
194 TTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATT
* * * * * * *
3602907 CCTTTGAAGACTGGGAACCCAAAACACATTCCCTTCTTTAGGATTCATGGCATTAATGCTTTGGT
259 CTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGT
* * * * * * *
3602972 GTCGCAAGAAAAACTTTCCTTTCCATCGTTTTTTATAGAATTAAAGTTTGTCTCTTATATAAGGC
324 GTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGAC
*
3603037 AAACATTAATACTCATACA-AATCCCCAATCTTTTCAGGATTAGGCACCATAAACATAGTCTTCT
389 AAACATTAATACTCATA-ATAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCT
*
3603101 TACT-GCGATACATCATATTGATGC
453 TATTAG-GATACATCATATTGATGC
* * * * *
3603125 TTTGGTTTTGCAAGAAAGGCTTCTTTCACACTAATTTTTGTAAAGTCTAAGTCCGTGCCTTAAAT
1 TTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
** * * ** *
3603190 GAGACAGGCGAT-GATTCAAGTAATGATCTTCTTTCATTTTGTGATTAGGTGCAATAAACACATT
66 GAGACAAAC-ATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
* ** *
3603254 CTCCTCATTAGGTTAAATGATATTGACAATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATT
130 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATT
* * ** * * *
3603319 TTCCTTAAAATTAAAGTTAATCCCCCAAGTAAGACAAGCATCGATTCTCGCAACAGTCTCTATTC
195 TTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTC
* * * * * *
3603384 CTTTCAAAACTGGGAAGCCAAAACATATTGCCTTCATTAGGATATATGGCATTGATGCTTTGGTG
260 TTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTG
* * * * * * *
3603449 TCACAAGAAAAGTTTTTCTTTCCATCATTTTTTATAGAATCAAAGTTTGTCACATATCTAAGACA
325 TCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACA
* * * * * *
3603514 AACATGAATACTCATACTAATCCCTAATCTTTTCAGGATAAGGCACCATAAACATAGTCTCCTCT
390 AACATTAATACTCATAATAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCT-T
* *
3603579 -TTAGGATACAACATATTGATGT
454 ATTAGGATACATCATATTGATGC
* *
3603601 TTTGGTTTTGCAAGAAAGAG-ATCTTT-CCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAA
1 TTTGGTTTTGCAAGAAAG-GCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAA
* * * * *
3603664 TGAGACAAAAATGGATTCTAGTGATGATCTTTATTCATTTTATGATTAGGCACTATAAGCACATT
65 TGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
* * * * * *
3603729 CTCCTCATGAGGATAAATGATATTGATGATTTTCTTTAGCATGAAAATCTTTTC-TTACTACGAT
130 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC-CCTAT
* * * * * * *
3603793 GCTT-CTTACTACGAT-AAACGTTC-TCCTCATTAGGATAAATGATATTG-A-GGATTAGGCATA
194 -TTTCCTTA--A-AATCAAA-GTTCATCC-C-TTA-AAT-AA-GACA-AGCATCGATT---C-TC
* * * * *** * ***
3603853 ATAAACGTTGTCTTC-TTACTACGATACTTCATATTGGTGCTTTGGTTTTGCAAGAAAGGCTTTT
244 GT-AAC--AGTCTCCATT-CT----T--TTCA-A-----G-ATTGG-GAAGCCA-AAA--C-ACA
** ** * * * * * * ** ** * **
3603917 TTCCCACCAATTTTTG-TAAAT-TC--T-AAG--TTCGTGCCTCAA-ATGAGAC-TAAC-GTGGA
287 TTCCCTTC-A-TTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAG-CTTTTCTTTCCA
* ** ** * * ** * **
3603972 TCCTAGTAATGAT--CCTCATTTATTTTGTGACTAGGCACA-ATAACACATTCTCCTCATTAGGA
349 -CC-ATTTTTGATAGAATCA--AAGTTTGT--CT---CTTATATAAGACA-----AACATTA--A
* * * ** * * * ** *** *** * *
3604034 TA--AATGATATTGGCGATTTTCTTTTGCATGA-AAATCTTTTATTTGCCCTA-TTTTCCTTAAA
398 TACTCATAATAATCCCCA--TTCTTTT-CAGGATTAGGC-ACCA-TAAACATAGTCTT-CTT---
* ** ** * * *
3604095 ATCAAAATTCACCCCCTAAATAAGACAAGC
454 ATTAGGA-T-A-CATC-ATAT-TG--ATGC
* *** * * **** * * ** * * *
3604125 ATCATTTCTTGGAATAGTTCCTATTCTTT--TA-AAGATTTGGAAGCTAAA-AC-ACAGTTCCTT
1 TTTGGTT-TTGCAAGAAAGGCT-TT-TTTCCCACCA-ATTT--TTG-TAAAGTCTA-AGTTCGTG
* * * * * * * * ** *
3604185 CCTTAGGATACGTGACATTGATGCTTTGGTGTTGCAAGAAAAATTTTACTTTCCA-CCATTTT-T
58 CCTCA--A-ATGAGACA---A-AC-ATGG-ATT-CTAG--TAATGAT-C-TT-CATTCATTTTGT
* * * * * * *
3604248 GA-TA-G-A--ATCAA-A-GTT-TGCCTCTTATATAAGACAATAATAAATAGTCATTGTAATCCC
108 GATTAGGCACTATAAACACATTCT-CCTC--AT-TAGGA-TA-AAT-GATATTGA-TG--AT---
* * ** * * * * * * * *
3604305 CATTCTTTT-CA-GGAATAGGC--ACCATAGACATAGTCTTCTCATTAGGATATACGATA-TTGA
160 -TTTCTTTTGCATGGAA-A-TCTTTTCTTTGCCCTA-T-TT-TCCTTA--AAAT-C-AAAGTTCA
** *** *** ** * ** * * * *** ***
3604365 T-TTTTTGTTTTCACAAGACAGTCCTTTTTCCCACCAATTTTTGTAAAGTTT-AAG-TTCGTGCC
215 TCCCTTAAATAAGACAAG-CA-TCGATTCTCGTAACAGTCTCCAT-TCTTTTCAAGATT-G-G--
* *** * *** * * * * * * *
3604427 TCAAATGAGAAAGACA-TGAATTCTAGTAATGAT-C-T-TCATTCATTTTCTAATTAG-G-CACA
273 -GAAGCCA-AAACACATTCCCTTC-A-TTAGGATACATGGCATTGA--TGCT--TTGGTGTCGCA
* * * * * * * * * ****
3604486 ATAAACA-C-ATTC--TCC-TCA-TTATGATA-AATGATATTTATGATTTTCTTTTGCCTGA-AA
330 AGAAA-AGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTT-TG--TCTCTTATATAAGACAA
* ** * * ** **** * * * *
3604543 ATC-TT-TTTTTGCCT--TATTTTCC-TTAAAATCA-AAGTTCA-TCCCCTAAAAAAGACA-AGC
391 A-CATTAATACT-CATAATAATCCCCATTCTTTTCAGGA-TT-AGGCACC---ATAA-ACATAG-
** ** * * * *
3604600 ATCAATTCTTGAAACAGTCTACATTC-TTTTTAAGA
447 -TC--TTCTT--ATTAGGATACA-TCATATTGATGC
** * ** ** *
3604635 TTTGG--AGGCCAAAACACATTCCCTTCCTTATGATACGTGA-CATTGATGCTTTGGGGTCACAA
1 TTTGGTTTTG-CAAGA-A-A--GGCTT--TT-T--T-C-CCACCA---AT--TTT--TGT-A-AA
** * * * *** * * * * ** ** *** **
3604697 G-AAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAA--ATAAGACAAAC
45 GTCTAAG---TTCGTGCC-TC--AAATGAGACAAAC-ATGGAT-TCTAGTAATGAT-CTTCATTC
* * * * ** * *
3604759 A-----TGAATAGTCA-TACTAATCCCTATTCTTTTCAAGATTAGGCAATATAA-GCCTATT-CT
101 ATTTTGTGATTAGGCACTA-TAAACAC-ATTCTCCTC---ATTAGG--ATA-AATG-ATATTGAT
* **** * * * * * * ** *
3604816 CG-TCATTAGGATACAT-GACAGTCCTTTT-TCCT-ACCAATTTT--TGTAAAGTTTAAGTTCGT
157 -GAT-TTTCTTTTGCATGGA-AAT-CTTTTCT-TTGCCCTATTTTCCT-TAAAATCAAAGTTCAT
* * * * * * * * * * *
3604875 GCCTCAAATGAGAC-AGACATGGATTCTAGTAA-TGATCTTCATTCATTTTC-TGATTAGGCA-T
216 CCCTTAAATAAGACAAG-CATCGATTCTCGTAACAG-TCTCCATTC-TTTTCAAGATTGGGAAGC
* * ** * * * ** * * * *
3604936 AATAAACACATTCTCC-TCATTATGATA-ATTGATATTTACGATTTTCTTTTGCATGAAAATCTT
278 CA-AAACACATTC-CCTTCATTAGGATACA-TGGCATTGATGCTTTGGTGTCGCAAGAAAAGC-T
* * ** *** * * ** * * * * * * *
3604999 TTTTTTTGCATTATTTTCCTTAAAATCAAAATTCATCCCCTAAAAAAGACAAGCATCAATTCTCG
339 TTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATTAATACTC-
* * * * * ** * * * *
3605064 A-AACAGTCTCCATTCCTTTCA-AAACAGGGAAGCCA-AAACATATTC-CCTTCATTAGAATACA
403 ATAATAATCCCCATTCTTTTCAGGATTA-GGCA-CCATAAACATAGTCTTCTT-ATTAGGATACA
****
3605125 AGGCATTGATGC
465 TCATATTGATGC
** * *
3605137 TTTGGTTTTGCAAGAAAGGCTTCCTTCCCTCCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAAT
1 TTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* * * * *
3605202 GAGACAGATATGGATTCTAGTAATGATCTTCATTCATTCTGTGGTTAGGCACCATAAACACATTC
66 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* ** * *
3605267 TCCTCTTTAGGATAAATGATATTGACAACTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTT
131 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTT
* * * *
3605332 TCCTTAAAATCAAAGTTAATTCCC-CAATTAAGACAAGCATTGATTCTCGTAACAGTCTCCATTC
196 TCCTTAAAATCAAAGTTCA-TCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTC
* * * * *
3605396 CTTTCAAAATAGGGAAGCCAAAACATATTCCCTTCATTAGGATACAAGGCATTGATGCCTTTGGT
260 TTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATG-CTTTGGT
* *
3605461 GTCGCAAGAAAAG-TTTTCTTTCAACCATTTTTGATAGAATCAATGTTTGTCTCTTA-AGTAAGA
324 GTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATA-TAAGA
* * * * * * *
3605524 CAAACATTAATACACATACTAATCCCCAATCATTTCAGGATTAGGCACCATAAACGTTGTCTTTT
388 CAAACATTAATACTCATAATAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCT
* * * * * *
3605589 TACTAGGCTGCATCACATTGAAGT
453 TATTAGGATACATCATATTGATGC
* * *
3605613 TTTGGTTTTGCAAGAAAGG-TATTTTCCCACCAATTTCTGTAAAGTCTAAGTTCGTGCCTCAAAG
1 TTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* * *
3605677 GAGACAAACATAGATTCTGGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
66 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* * * *
3605742 TCCTCATGAGGATAAATAATATTAATGATTTTCTTTTGCATGGAAATCTCTTC-TTGCCCTATTT
131 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTT
* *
3605806 TCCCTT-AAATCAAAGTTCATACCTTAAATAAGATAAGCATCGATTCTCGTAACAGTCTCCATTC
196 T-CCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTC
* * *
3605870 TTTTCAAGATTGGGAAGCCAAAACACATTCCATTCATTAGGATACTTGACATTGATGCTTTGGTG
260 TTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTG
* * *
3605935 TCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGATAGAATCAATGTTTGTCCCTTA-AGTAAGAC
325 TCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATA-TAAGAC
* * * * ** * * *
3605999 AAACATTAATACACATACTAATCCCCAATCATTTCAGGATTAGGCAATATAAACATATTCTTGTC
389 AAACATTAATACTCATAATAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTT
*
3606064 ATTAGTATACA-CGATATTGATGC
454 ATTAGGATACATC-ATATTGATGC
* * * * *
3606087 TTCGATTTTGCAAGGAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTATA-TTTGTGCCTCAAA
1 TTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTA-AGTTCGTGCCTCAAA
* * ** *
3606151 CGAGACAAACATGGATTCCAGTAACAATCTTCATTCATTTTGTGATTAGGCACTATAAACATATT
65 TGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
* *
3606216 CTCCTCATT-GTG-TAAATGATATTGATGATTTTCTTTTGCTTGGAAATCTTTTCTTTACCCTAT
130 CTCCTCATTAG-GATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTAT
* * * * *
3606279 TTTCCTTAAAATCAAAGTTCATCTCTCAAATAGGACAAGCTTCGATTCTCGTAACAGTCTCTATT
194 TTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATT
* * **
3606344 CCTTTCAAGACTACGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGT
259 CTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGT
* * * * *
3606409 GTCGCAAGAAAAGCTTTTCTTTGCACCGTTTTTGGTAGAATTAAAGTTTGTCTCTTACATAAGAC
324 GTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGAC
* * * * * *
3606474 AAACAGTAATACTCATACTAATCCCCAATCTTTTCAAGATTAGGCACCATAAACATAGACTTCTC
389 AAACATTAATACTCATAATAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTT
* *
3606539 ACTAGCATACATCATATTGATGC
454 ATTAGGATACATCATATTGATGC
* * * *
3606562 TTTGGTTTTGCAAGAAAAGCTTTTTTCCTACCAATTTTTGTAAGGTCTAAGATCGTGCCTCAAAT
1 TTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* * * * * * *
3606627 CAGACAAACATTGAATCTAGTAATGATCTTCAATCATTTTGTGATTAGGCACTATAAATAGATTT
66 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* * ** *
3606692 TCCTCATTAGGATAAATGATATTGATGATTTACTTTTGGATAAAAATCTTTTCTTTGCCTTATTT
131 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTT
*
3606757 TCCTTAAAATCAAAATTCATCTCC-TAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTC
196 TCCTTAAAATCAAAGTTCATC-CCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTC
* * *
3606821 CTTTCAAGACTGGGAAGCCAAAACATATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTG
260 TTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTG
** * * *
3606886 TCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTTATAGAATCAAAGTTCGTCTCTTATATAAGGCA
325 TCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACA
* **
3606951 AACAATAATACTCATACGAATCCCCATT-TTTTCAGGATTAGGCACCATAAACATAGTCTTCTTA
390 AACATTAATACTCATAATAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTA
* *
3607015 CTAGGATACATCATATTGAAGC
455 TTAGGATACATCATATTGATGC
* * * * * * * *
3607037 TTTTGTTTTTCAGGAAGGGCTTTTTTCCCATCAATTATTGTAAAGTC-ATGTTCATGCCTCAAAT
1 TTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* * * * * *
3607101 TAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTGGTAATTAGGCACTAGAAACATATTC
66 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* * * * * *
3607166 GCCTTATTAGGGTAAATGATATTGATGATTTCCTTTTGCTTGGAAATCTTTTCTTTGCCTTATTT
131 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTT
** * * *
3607231 TCCTTAAAATCAAAGTTCATCTATTAAAAAAGACAAGCATTGATTCTTGTAACAGTCTCCATTCT
196 TCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCT
* * * * *
3607296 TTTCAAGACTAGGCAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCCTTAGTGT
261 TTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGT
** * * * *
3607361 CGCAAGAAAAGC--TTCTTTCTGTCGA-TTTTGATACAATCAAACTTTGTCTCTTTTATAAGACA
326 CGCAAGAAAAGCTTTTCTTTC-CACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACA
* * * *
3607423 AACATGAATACTCATACTAATCCCCAATCTTTTCAGGACTAGGCACCATAAACATAGTCTTCTTA
390 AACATTAATACTCATAATAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTA
*
3607488 CTAGGATACATCATATTGATGC
455 TTAGGATACATCATATTGATGC
* * * * * *
3607510 TTTGGTTTTCCAAGAAAGACTTTTTTCCCACCAACTTTTGTGAAGTCTAAGCTCGCGCCTCAAAT
1 TTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* * *
3607575 GTGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTGTGATTAGGCACAATAAACACATTC
66 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* ** * * *
3607640 TCCTCCTTAGGATAAATGATATTGACAATTTTTTTTTGCATGAAAATCTTTTCTTTGCCTTATTT
131 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTT
* * * * * * *
3607705 TCCTTAAAATTAAAGCTCATCCCCTAAATAAGATAAGCATTGATTCTCGAAAGAGTCTCCATTCT
196 TCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCT
* * * * * * * ** *
3607770 TTTAAAGATTTGGAAGTCAAAACACGTTCCCTTCCTTAAGATACGTCACATTGATACTTTGGTGT
261 TTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGT
* * * ** * * *
3607835 TGCAAGAAAAGCTTTACTTTCCACAAGGTTTGATAGAGTCAAAGTTTGCCTTTTATATAAGACAA
326 CGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAA
** * * * ** * * *
3607900 ACAAGAATAGTCATACTAACCCCCATTCTTTTCAGGAACAGGCACCACATACATAGTCTTCTCAT
391 ACATTAATACTCATAATAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTAT
* * *
3607965 TGGGATACA-CA-ATATCATTGT
456 TAGGATACATCATAT-TGA-TGC
** * * * * * *
3607986 TTTGGTTTCACAAGACAGTCCTTTTTCCCACCAATTTTTGTAAAGTCTAAGCTCATGCCTTAAAT
1 TTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* *
3608051 GAGACAGACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACAATAAACACATTC
66 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* ** * * *
3608116 TCCTCATTAGGATAAATGATATTGGTGATTTTCTTTCACATGAAAAACTTTTTTTTG-CCTCA--
131 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCT-ATT
* * * * * *
3608178 TTCCTTAAAATCAAAGTTCATCCCCTAAAAAAGATAAGCATCAATTCTCGAAACCGTCTCCATTC
195 TTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTC
* * * ** * *
3608243 TTTTCAAGATTTGGAAGCCAAAACCCATTCCCTTCCTTAGGATATGTGACATTGATGCTTTGGGG
260 TTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTG
* ** * * *
3608308 TAGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATATGACA
325 TCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACA
* * * * * * ** * * * *
3608373 AACATGAATAGTGATACTAATCCCTATTCTTTTCAAGATTAGGCAATATAAGCATATTCTTGTCA
390 AACATTAATACTCATAATAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTA
** *
3608438 TTAGGATACAAGATATTGAAGC
455 TTAGGATACATCATATTGATGC
* * * *
3608460 TTTGGTTTCGCAAGAAAAGCTTTTTTCCCACAAATTTTGGTAAAGTCTAAGTTCGTGTGCCTCAA
1 TTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTC--GTGCCTCAA
* * *
3608525 ATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGTTTAGGCAC-ATAAACATAT
64 ATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAT
* * * * *
3608589 TATCCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCTTGAAAATCTTTTCTTTACCCTAT
129 TCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTAT
* * * *
3608654 TTTCCTTAAAATCAAAGTTCATCTCTTAAATAAGACAAGCAACGATTCTCGTAATAATCTCCATT
194 TTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATT
* * * * * * * *
3608719 CCTTTGAAGACTGGGAACCCAAAACACATTCCTTTCTTTAGGATTCATGGCATTAATGCTTTGGT
259 CTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGT
* * * * * * *
3608784 GTCGCAAGAAAAACTTTCCTTTCCATCGTTTTTTATAGAATTAAAGTTTGTCTCTTATATAAGGC
324 GTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGAC
*
3608849 AAACATTAATACTCATACA-AATCCCCAATCTTTTCAGGATTAGGCACCATAAACATAGTCTTCT
389 AAACATTAATACTCATA-ATAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCT
*
3608913 TACT-GCGATACATCATATTGATGC
453 TATTAG-GATACATCATATTGATGC
* * * * *
3608937 TTTGGTTTTGCAAGAAAGGCTTCTTTCACACTAATTTTTGTAAAGTCTAAGTCCGTGCCTTAAAT
1 TTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
** * * ** *
3609002 GAGACAGGCGAT-GATTCAAGTAATGATCTTCTTTCATTTTGTGATTAGGTGCAATAAACACATT
66 GAGACAAAC-ATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
* ** *
3609066 CTCCTCATTAGGTTAAATGATATTGACAATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATT
130 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATT
* * ** * * *
3609131 TTCCTTAAAATTAAAGTTAATCCCCCAAGTAAGACAAGCATCGATTCTCGCAACAGTCTCTATTC
195 TTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTC
* * * * * *
3609196 CTTTCAAAACTGGGAAGCCAAAACATATTGCCTTCATTAGGATATATGGCATTGATGCTTTGGTG
260 TTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTG
* * * * * * *
3609261 TCACAAGAAAAGTTTTTCTTTCCATCATTTTTTATAGAATCAAAGTTTGTCACATATCTAAGACA
325 TCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACA
* * * * * *
3609326 AACATGAATACTCATACTAATCCCTAATCTTTTCAGGATAAGGCACCATAAACATAGTCTCCTCT
390 AACATTAATACTCATAATAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCT-T
* *
3609391 -TTAGGATACAACATATTGATGT
454 ATTAGGATACATCATATTGATGC
* *
3609413 TTTGGTTTTGCAAGAAAGAG-ATCTTT-CCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAA
1 TTTGGTTTTGCAAGAAAG-GCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAA
* * * * *
3609476 TGAGACAAAAATGGATTCTAGTGATGATCTTTATTCATTTTATGATTAGGCACTATAAGCACATT
65 TGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
* * * * *
3609541 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTAGCATGAAAATCTTTTC-TTACTACGAT
130 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC-CCTAT
* * * * * * *
3609605 GCTT-CTTACTACGAT-AAACGTTC-TCCTCATTAGGATCAATGATATTG-A-GGATTAGGCATA
194 -TTTCCTTA--A-AATCAAA-GTTCATCC-C-TTA-AAT-AA-GACA-AGCATCGATT---C-TC
* * * * *** * ***
3609665 ATAAACGTTGTCTTC-TTACTACGATACTTCATATTGGTGCTTTGGTTTTGCAAGAAAGGCTTTT
244 GT-AAC--AGTCTCCATT-CT----T--TTCA-A-----G-ATTGG-GAAGCCA-AAA--C-ACA
** ** * * * * * * ** ** * **
3609729 TTCCCACCAATTTTTG-TAAAT-TC--T-AAG--TTCGTGCCTCAA-ATGAGAC-TAAC-GTGGA
287 TTCCCTTC-A-TTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAG-CTTTTCTTTCCA
* ** ** * * ** * **
3609784 TCCTAGTAATGAT--CCTCATTTATTTTGTGACTAGGCACA-ATAACACATTCTCCTCATTAGGA
349 -CC-ATTTTTGATAGAATCA--AAGTTTGT--CT---CTTATATAAGACA-----AACATTA--A
* * * ** * * * ** *** *** * *
3609846 TA--AATGATATTGGCGATTTTCTTTTGCATGA-AAATCTTTTATTTGCCCTA-TTTTCCTTAAA
398 TACTCATAATAATCCCCA--TTCTTTT-CAGGATTAGGC-ACCA-TAAACATAGTCTT-CTT---
* ** ** * * *
3609907 ATCAAAATTCACCCCCTAAATAAGACAAGC
454 ATTAGGA-T-A-CATC-ATAT-TG--ATGC
* *** * * **** * * ** * * *
3609937 ATCATTTCTTGGAATAGTTCCTATTCTTT--TA-AAGATTTGGAAGCTAAA-AC-ACAGTTCCTT
1 TTTGGTT-TTGCAAGAAAGGCT-TT-TTTCCCACCA-ATTT--TTG-TAAAGTCTA-AGTTCGTG
* * * * * * * * ** *
3609997 CCTTAGGATACGTGACATTGATGCTTTGGTGTTGCAAGAAAAATTTTACTTTCCA-CCATTTT-T
58 CCTCA--A-ATGAGACA---A-AC-ATGG-ATT-CTAG--TAATGAT-C-TT-CATTCATTTTGT
* * * * * * *
3610060 GA-TA-G-A--ATCAA-A-GTT-TGCCTCTTATATAAGACAATAATAAATAGTCATTGTAATCCC
108 GATTAGGCACTATAAACACATTCT-CCTC--AT-TAGGA-TA-AAT-GATATTGA-TG--AT---
* * ** * * * * * * * *
3610117 CATTCTTTT-CA-GGAATAGGC--ACCATAGACATAGTCTTCTCATTAGGATATACGATA-TTGA
160 -TTTCTTTTGCATGGAA-A-TCTTTTCTTTGCCCTA-T-TT-TCCTTA--AAAT-C-AAAGTTCA
** *** *** ** * ** * * * *** ***
3610177 T-TTTTTGTTTTCACAAGACAGTCCTTTTTCCCACCAATTTTTGTAAAGTTT-AAG-TTCGTGCC
215 TCCCTTAAATAAGACAAG-CA-TCGATTCTCGTAACAGTCTCCAT-TCTTTTCAAGATT-G-G--
* *** * *** * * * * * * *
3610239 TCAAATGAGAAAGACA-TGAATTCTAGTAATGAT-C-T-TCATTCATTTTCTAATTAG-G-CACA
273 -GAAGCCA-AAACACATTCCCTTC-A-TTAGGATACATGGCATTGA--TGCT--TTGGTGTCGCA
* * * * * * * * * ****
3610298 ATAAACA-C-ATTC--TCC-TCA-TTATGATA-AATGATATTTATGATTTTCTTTTGCCTGA-AA
330 AGAAA-AGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTT-TG--TCTCTTATATAAGACAA
* ** * * ** **** * * * *
3610355 ATC-TT-TTTTTGCCT--TATTTTCC-TTAAAATCA-AAGTTCA-TCCCCTAAAAAAGACA-AG-
391 A-CATTAATACT-CATAATAATCCCCATTCTTTTCAGGA-TT-AGGCACC---ATAA-ACATAGT
* * * * * *
3610411 CATCAATTCTT--GAAACAGTCTACATT-CT-T
448 CTTC--TTATTAGGATACA-TC-ATATTGATGC
* * * * *** * * * ** * * *
3610440 TTTAAGATTTGGAAGCCAAA-AC-ACATTCCCTTCCTTATGATACGTGACA-T-TGATGCTTTG-
1 TTT-GGTTTTGCAAG--AAAGGCTTTTTTCCC-ACC-AAT-TTTTGT-AAAGTCT-AAG-TTCGT
** * * *** * * **
3610500 GGGTCACAA-GA-A-AAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTC-TTAAA
57 GCCTCA-AATGAGACAAAC-ATGGATTCTA--G----TAAT-G-ATC----TTCAT-TCATT---
* * * * * ** *
3610561 TAAGACAAACATGAATAGTCA-TACTAATCCCTATTCTTTTCAAGATTAGGCAATATAA-GCCTA
104 T-TG-------TGATTAGGCACTA-TAAACAC-ATTCTCCTC---ATTAGG--ATA-AATG-ATA
* * **** * * * * * * **
3610624 TT-CTCG-TCATTAGGATACAT-GACAGTCCTTTT-TCCT-ACCAATTTT--TGTAAAGTTTAAG
152 TTGAT-GAT-TTTCTTTTGCATGGA-AAT-CTTTTCT-TTGCCCTATTTTCCT-TAAAATCAAAG
* * * * * * * * * *
3610682 TTCGTGCCTCAAATGAGAC-AGACATGGATTCTAGTAA-TGATCTTCATTCATTTTC-TGATTAG
211 TTCATCCCTTAAATAAGACAAG-CATCGATTCTCGTAACAG-TCTCCATTC-TTTTCAAGATTGG
* ** * ** * * * ** * * *
3610744 GCA-TAATAAACACATTCTCC-TCATTATGATA-ATTGATATTTACGATTTTCTTTTGCATGAAA
273 GAAGCCA-AAACACATTC-CCTTCATTAGGATACA-TGGCATTGATGCTTTGGTGTCGCAAGAAA
* * * ** *** * * ** * * * * * *
3610806 ATCTTTTTTTTTGCATTATTTTCCTTAAAATCAAAATTCATCCCCTAAAAAAGACAAGCATCAAT
335 AGC-TTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATTAAT
* * * * * * ** * * * *
3610871 TCTCGA-AACAGTCTCCATTCCTTTCA-AAACAGGGAAGCCA-AAACATATTC-CCTTCATTAGA
399 ACTC-ATAATAATCCCCATTCTTTTCAGGATTA-GGCA-CCATAAACATAGTCTTCTT-ATTAGG
****
3610932 ATACAAGGCATTGATGC
460 ATACATCATATTGATGC
** * *
3610949 TTTGGTTTTGCAAGAAAGGCTTCCTTCCCTCCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAAT
1 TTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* * * * *
3611014 GAGACAGATATGGATTCTAGTAATGATCTTCATTCATTCTGTGGTTAGGCACCATAAACACATTC
66 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* ** * *
3611079 TCCTCTTTAGGATAAATGATATTGACAACTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTT
131 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTT
* * * *
3611144 TCCTTAAAATCAAAGTTAATTCCC-CAATTAAGACAAGCATTGATTCTCGTAACAGTCTCCATTC
196 TCCTTAAAATCAAAGTTCA-TCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTC
* * * * *
3611208 CTTTCAAAATAGGGAAGCCAAAACATATTCCCTTCATTAGGATACAAGGCATTGATGCCTTTGGT
260 TTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATG-CTTTGGT
* *
3611273 GTCGCAAGAAAAG-TTTTCTTTCAACCATTTTTGATAGAATCAATGTTTGTCTCTTA-AGTAAGA
324 GTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATA-TAAGA
* * * * * * *
3611336 CAAACATTAATACACATACTAATCCCCAATCATTTCAGGATTAGGCACCATAAACGTTGTCTTTT
388 CAAACATTAATACTCATAATAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCT
* * * * * *
3611401 TACTAGGCTGCATCACATTGAAGT
453 TATTAGGATACATCATATTGATGC
* * *
3611425 TTTGGTTTTGCAAGAAAGG-TATTTTCCCACCAATTTCTGTAAAGTCTAAGTTCGTGCCTCAAAG
1 TTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* * *
3611489 GAGACAAACATAGATTCTGGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
66 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* * * * *
3611554 TCCTCATGAGGATAAATAATATTAATGATTTTCTTTTGCATGGAAATCTCTTC-ATGCCCTATTT
131 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTT
* *
3611618 TCCCTT-AAATCAAAGTTCATACCTTAAATAAGATAAGCATCGATTCTCGTAACAGTCTCCATTC
196 T-CCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTC
* * *
3611682 TTTTCAAGATTGGGAAGCCAAAACACATTCCATTCATTAGGATACTTGACATTGATGCTTTGGTG
260 TTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTG
* * *
3611747 TTGCAAGAAAAGCTTTTCTTTCAACCATTTTTGATAGAATCAATGTTTGTCTCTTA-AGTAAGAC
325 TCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATA-TAAGAC
* * * * *
3611811 AAACATTAATAGC-CATACTAATCCCTATTCTTTTCCA-GATTAGGCAACATAAACATATTCTTG
389 AAACATTAATA-CTCATAATAATCCCCATTCTTTT-CAGGATTAGGCACCATAAACATAGTCTTC
*
3611874 TCATTAGGATACA-CGATATTGATGC
452 TTATTAGGATACATC-ATATTGATGC
* ** * * * * *
3611899 TTCGGTTTCACAAGGAATGCTTTCTTCCCACCAATTTTTGTAAAGTCCAAGTTCATGCCTCAAAT
1 TTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* * * *
3611964 GAGACAAATATGGATTCTAGTAACGATCTTCATTCATTTTGGGATTAGGCACTATAAACATATTC
66 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* * * * * *
3612029 TCCTCATTAGGGTAAATGTTATTGATGATTTTCTTTTGCTTGCAAATCCTTTCTTTACCCTATTT
131 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTT
* ** *
3612094 TCCTTAAAATCAAAGTTCATCTCACAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCA
196 TCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCT
** * * *
3612159 TTTCAAGACAGTGAAGCCAAAACACATTCCCTTCATTAGGAAACATGACATTGATGCTTTGGTGT
261 TTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGT
* * * *
3612224 TGCAAGAAAAGCTTTTCTTTCCAGCATTTTTGGTAGAACCAAAGTTTGTCTCTTATATAAGACAA
326 CGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAA
* * * * *
3612289 ACATTAATACTCATACA-AATCCCTATT-TTTCTTAGGATTAGGCACCATAGACGTAGTCTTCTC
391 ACATTAATACTCATA-ATAATCCCCATTCTTT-TCAGGATTAGGCACCATAAACATAGTCTTCTT
* *
3612352 ATTAGGATAAATCATATTAATGC
454 ATTAGGATACATCATATTGATGC
* * *
3612375 TTTGGTTTTGCAAGAAAGGCTTTTTTCTCAGCAATTTTTGTAAAGTCTAAGTCCGTGCCTCAAAT
1 TTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* * * * * *
3612440 TAGACAAACATTGAATCTAGTAATGATCTTCAATCATTTTGTAATTAGGCACGATAAAC-CTATT
66 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACAC-ATT
* * * * *
3612504 CTCCTCATTAGGGTAAATGATATTGATGATTTCCTTTTGCTTGGAAATCTTTTCTTCGCCTTATT
130 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATT
* ** * * *
3612569 TTCCTTGAAATCAAAGTTCATCTGTTAAAAAAGACAAGCATTGATTCTCGTAACAGTCACCATTC
195 TTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTC
* * *
3612634 TTTTCAAGATTGGGCAA-CTAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCCTTGCT
260 TTTTCAAGATTGGG-AAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGT
* * * *
3612698 GTCGCAAGAAAAGCTTTTCTTTTCACCGTTTTTAATAGAATCAAAGTTTGTCTCCTATATAAGAC
324 GTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGAC
* * * * *** * * * *
3612763 AAACATGAATACTCATACTAATCCCTAATCTTGAAAAGATTAGGCACCTTAAACAAAGTCTTCAT
389 AAACATTAATACTCATAATAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTT
*
3612828 ACTAGGATACATCATATTGATGC
454 ATTAGGATACATCATATTGATGC
* * * * *
3612851 TTTGGTTTTCCAAGAAAGGCTTTTTTCCCATCAATTTTTGCATAGTCTAAGTTCATGCCTCAAAT
1 TTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
** * * * *
3612916 GAGACTGACATTGATTCTAGTAATCATCTTCATTCATTTTGTGATTAGGCACAATAAAAACATTC
66 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* * * * *
3612981 TCCTCATTAGGATAAATGATCTTGATGATTTTTTTTTGGATGAAAATCTTTTCTTTGCGCTATTT
131 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTT
* * * * *
3613046 TCCTTAAAAGCAAAATTCATCCCTTAAGTAAGACAAGCATCGATTCTCGAAACAGTCTCCAATCT
196 TCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCT
* * * *
3613111 TTT-AGAGATTTGCAAGACAAAACACATTCCCTTCCTTAGGAT--ATGCGACATTGATGCTTTGG
261 TTTCA-AGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATG-G-CATTGATGCTTTGG
* * * *
3613173 TGTTGCAGGAAAAGCTTTACTTTCCACCACTTTTGATAGAATCAAAGTTTG-CGTCTTATATAAG
323 TGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTC-TCTTATATAAG
** * * * * * * *
3613237 ACAAACAAGAATAGTCATACTAATCCCCATTCTTTTCAAGAATAGGCACCACAGACATAATCTTC
387 ACAAACATTAATACTCATAATAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTC
* * * *
3613302 TCAATAGGATACATGATATGGATG-
452 TTATTAGGATACATCATATTGATGC
* ** * * * *
3613326 TATTCGTTTCACAAGATAGTCTTTTTTCTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCCCAAA
1 T-TTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAA
*
3613391 TGAGACAAACATGGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
65 TGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
* * *
3613456 CTCCTCAATAGGATAAATGATATTAATGATTTTCTTTTGCATGGAAAGCTTTTC-TTGCCCTATT
130 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATT
* * ** * *
3613520 TTCCCTT-AAATCTAAGTTCATACCTTAAATAAGGTAAGCATCGATTCTCATAAAAGTCTCCATT
195 TT-CCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATT
* * * *
3613584 CTTTTCAAGATTGGGAAGCCAAAATACATTCCATTCATTAGGATACATGACTTTGATGCTTTGGT
259 CTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGT
* * * *
3613649 GTCGCATGAAAAGCTTTTCTTTCAACCATTTTTGATAGAATCAATGTTTGTCTCTTA-AGTATGA
324 GTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATA-TAAGA
* * * * * ** * * * *
3613713 TAAACATTAATAGTCATACTAATCCCTATTCTTTTCTGGATTAGGCAATATAAAAATATTTTTAT
388 CAAACATTAATACTCATAATAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCT
* * *
3613778 CATTAGTATACA-CGATATTAATGC
453 TATTAGGATACATC-ATATTGATGC
* * * * * * *
3613802 TTTGGTTTTGCAAGGAAGGCTTTCTTCCCCCCAATTTTTTTAAAGTCTATGTCCGTGCCTCAAAC
1 TTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* * * **
3613867 GAGACAAACATGGATTCCAATAACGATCTTCATTCATTTTGTGATTAGGCACTATAAACATTTTC
66 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* * * *
3613932 TCCTCATTAGTG-TAAATGATATTGATGATTTTCTTTTACTTGAAAATCTTTTCTTTACCCTATT
131 TCCTCATTAG-GATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATT
* * * ** *
3613996 TTCCTCAAAATCAAAGTTCATCTCTCAAATAAGACAAGGTTTGATTCTCGTAACAGTCTCCATTC
195 TTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTC
* * *
3614061 CTTTCAAGACTGCGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTG
260 TTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTG
* * * *
3614126 TCGCAAGAAAAGCTTTTTTTTCTC-TCGTTTTTGATAGAATCAAAGTTTGTCTCTTATACAAGAC
325 TCGCAAGAAAAGCTTTTCTTTC-CACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGAC
* * * * * *
3614190 AAACATGAGTACT-AAAACTAATCCCTAATATTTTCAGGATTAGGCACCATAAACATA-TCTTCT
389 AAACATTAATACTCATAA-TAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCT
*
3614253 TACTAGGATACATCATATTGATGC
453 TATTAGGATACATCATATTGATGC
** *
3614277 TTTGGTTTTGCAAGAAAGGCTTCCTTCCGACCAATTTTTGT-AAGTCTAAGTTCGTGCCTCAAAT
1 TTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* * * * *
3614341 GAGACAGACGTGGATTATAGTAATGATCTTCATTAATTTTGTGATTAGGCACAATAAACACATTC
66 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* * * * ** * * *
3614406 CCCTCTTTAGGGTAAATGACATTGACAATTTTCTTTTGCATGAAAATCTTTTCTTTGCCATTTTT
131 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTT
* ** ** * * *
3614471 TCCTTAAAAT-AAATGTTAATCCCCCAAGCAAGACAAACATCAACTCTCGTAACAGTC-CCTATT
196 TCCTTAAAATCAAA-GTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCC-A-T
* ** *** * ** * *** *
3614534 TCTTTCCACCATTTTTTATAG--AATTAA-A-GTTGTC-TCA-TA-TATA-AT-GCAAACATG-A
258 TCTTTTCAAGA-TTGGGA-AGCCAA--AACACATTCCCTTCATTAGGATACATGGCATTGATGCT
* ** ** ** *** ** * ** *** * * * * *
3614589 AT--ACTCATACTAATCCCTAATCTTTTCAGGA-TAAGGCACCATAAACATAGTCT-TCTCTT-T
319 TTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG-A-TAGAATCAAAGTTTGTCTCTTAT
** * * * * ** ** * ** * * ** ** *
3614649 AGGATACACCATATTGAGGTTTTGGTTTCGCAAGGAA-GGCC-TTCTTCCTAACAATTTTTGTA-
382 ATAAGACA-AACATT-A----AT--ACTCATAA-TAATCCCCATTCTT-TTCAGGA-TTAGGCAC
* * ** * * ** * * * * *
3614711 AAGTCTAAGTTTGTGCCTCAAATGA-GACA-AACATGGATT-CTAC
436 CA-T-AAACATAGT-CTTCTTATTAGGATACATCAT--ATTGATGC
* * * * ** ***** * *
3614754 TGATGATCTT-C---AAA--CTTTTTGT--GATTAGGCACTATAAA--C-ATA-TTC-T-CTTCA
1 T-TTGGTTTTGCAAGAAAGGCTTTTT-TCCCACCAATTTTTGTAAAGTCTA-AGTTCGTGCCTCA
* * * * *
3614805 TTAGGATA-AATGATATTGATGATTTTCTTTTACGTGAA-AATCTT--TTC--TTTGCCCT-ATT
63 -AATGAGACAA--ACA-TG--GA--TTC---TA-GT-AATGATCTTCATTCATTTTG---TGATT
** * * * * * * * **
3614863 -TTCCCT-TAAATCAAAGTTCAT-GTC-TTA-AAT-AA-GATA-AGTACTGATTCTC-GTAACA-
112 AGGCACTATAAA-CACA-TTC-TCCTCATTAGGATAAATGATATTG-A-TGATTTTCTTTTGCAT
** * * *** **** * *** *
3614918 -G-TCTCTATTCTTTTCAAGATTGGGAAGTTAAAAT-ACA-TTCAATTTATTAGGATATACGACA
172 GGAAATCTTTTCTTTGCCCTATT--TTCCTTAAAATCAAAGTTC-ATCCCTTA--A-ATAAGAC-
* * * * * * * ** *
3614979 TTAATGCTTTGGTGTCGCAAG-AAAAG-CTTC--TC-TTTCAACCATTTTTGATAG---AATCA-
230 --AA-GCATCGAT-TCTC--GTAACAGTCTCCATTCTTTTCAA-GA-TTGGGA-AGCCAAAACAC
*** * * * * * ** ** ** *
3615035 ATGTTTGTCTC-CTAAG-TA-A-GACA---A-ACATTAATAGT--CATACTAATCCTCATTCTTT
286 AT-TCCCT-TCATTAGGATACATGGCATTGATGCTTTGGT-GTCGCA-AGAAAAGCT-TTTCTTT
* ** ** * * * * * * * *
3615090 TCAGGA-TTAGGCAATATTAA-CATATTCTTGTCGC-TAGGATAA-AC-GATATTGATGATTCGG
346 CCACCATTTTTG--ATA-GAATCAAAGT-TTGTCTCTTA-TATAAGACAAACATT-A--ATAC--
** * ** * *** * ** ** * * ** *
3615150 TTTCGCAAGGAA-GGCC-TTCTTCCTAACAATTTTTGTAAACTC-T-AAGTTTGTGCCTCAAATG
401 --TCATAA-TAATCCCCATTCTT--T-TCAGGATTAG-GCAC-CATAAACATAGT-CTTCTTATT
* * * *
3615211 A-GACA-AACATGGATT-CTAC
457 AGGATACATCAT--ATTGATGC
* * * * ** ***** *
3615230 TGATGATCTT-C---AAA--CTTTTTGT--GATTAGGCACTATAAA--C-ACA-TTC-T-CCTCA
1 T-TTGGTTTTGCAAGAAAGGCTTTTT-TCCCACCAATTTTTGTAAAGTCTA-AGTTCGTGCCTCA
* * * * *
3615281 TTAGGATA-AATGATATTGATGATTTTCTTTTACGTGAA-AATCTT--TTC--TTTGCCCT-ATT
63 -AATGAGACAA--ACA-TG--GA--TTC---TA-GT-AATGATCTTCATTCATTTTG---TGATT
*** * * * * * ** * *
3615339 TTTC-CT-TAAATCAAAGTTCAT-GTC-TTA-AAT-AA-GATA-AGCACCGA--TTCTCGT-AAC
112 AGGCACTATAAA-CACA-TTC-TCCTCATTAGGATAAATGATATTG-A-TGATTTTCTTTTGCAT
** * * *** **** * *** *
3615393 GG-TCTCTATTCTTTTCAAGATTGGGAAGTTAAAAT-ACA-TTCAATTTATTAGGATATATGACA
172 GGAAATCTTTTCTTTGCCCTATT--TTCCTTAAAATCAAAGTTC-ATCCCTTA--A-ATAAGACA
* * * * * * * ** *
3615455 TTGATGCTTTGGTGTCGCAAG-AAAAG-CTTC--TC-TTTCAACAATTTTTGATAG---AATCA-
231 ---A-GCATCGAT-TCTC--GTAACAGTCTCCATTCTTTTCAA-GA-TTGGGA-AGCCAAAACAC
*** * * * * * ** ** ** *
3615511 ATGTTTGTCTC-CTAAG-TA-A-GACA---A-ACATTAATAGT--CATACTAATCCTCATTCTTT
286 AT-TCCCT-TCATTAGGATACATGGCATTGATGCTTTGGT-GTCGCA-AGAAAAGCT-TTTCTTT
* ** ** * * * * * * * *
3615566 TCAGGA-TTAGGCAATATTAA-CATATTCTTGTCGC-TAGGATAA-AC-GATATTGATGATTCGG
346 CCACCATTTTTG--ATA-GAATCAAAGT-TTGTCTCTTA-TATAAGACAAACATT-A--ATAC--
** * ** * *** * ** ** * * ** *
3615626 TTTCGCAAGGAA-GGCC-TTCTTCCTAACAATTTTTGTAAACTC-T-AAGTTTGTGCCTCAAATG
401 --TCATAA-TAATCCCCATTCTT--T-TCAGGATTAG-GCAC-CATAAACATAGT-CTTCTTATT
* * * *
3615687 A-GACA-AACATGGATT-CTAC
457 AGGATACATCAT--ATTGATGC
* * * * ** ***** *
3615706 TGATGATCTT-C---AAA--CTTTTTGT--GATTAGGCACTATAAA--C-ACA-TTC-T-CCTCA
1 T-TTGGTTTTGCAAGAAAGGCTTTTT-TCCCACCAATTTTTGTAAAGTCTA-AGTTCGTGCCTCA
* * * * *
3615757 TTAGGATA-AATGATATTGATGATTTTCTTTTACGTGAA-AATCTT--TTC--TTTGCCCT-ATT
63 -AATGAGACAA--ACA-TG--GA--TTC---TA-GT-AATGATCTTCATTCATTTTG---TGATT
*** * * * * * * * **
3615815 TTTC-CT-TAAATCAAAGTTCAT-GTC-TTA-AAT-AA-GATA-AGCACCGATTCTC-GTAACA-
112 AGGCACTATAAA-CACA-TTC-TCCTCATTAGGATAAATGATATTG-A-TGATTTTCTTTTGCAT
** * * *** **** * *** *
3615870 -G-TCTCTATTCTTTTCAAGATTGGGAAGTTAAAAT-ACA-TTCAATTTATTAGGATATACGACA
172 GGAAATCTTTTCTTTGCCCTATT--TTCCTTAAAATCAAAGTTC-ATCCCTTA--A-ATAAGACA
* * * * * * * ** *
3615931 TTGATGCTTTGGTGTCGCAAG-AAAAG-CTTC--TC-TTTCAACCATTTTTGATAG---AATCA-
231 ---A-GCATCGAT-TCTC--GTAACAGTCTCCATTCTTTTCAA-GA-TTGGGA-AGCCAAAACAC
*** * * * * * ** ** ** *
3615987 ATGTTTGTCTC-CTAAG-TA-A-GACA---A-ACATTAAT-T-GTCATACTAATCCTCATTCTTT
286 AT-TCCCT-TCATTAGGATACATGGCATTGATGCTTTGGTGTCG-CA-AGAAAAGCT-TTTCTTT
* ** ** * * * * * * * *
3616042 TCAGGA-TTAGGCAATATTAA-CATATTCTTGTCGC-TAGGATAA-AC-GATATTGATGATTCGG
346 CCACCATTTTTG--ATA-GAATCAAAGT-TTGTCTCTTA-TATAAGACAAACATT-A--ATAC--
** * * * ** *
3616102 TTTCGCAAGGAAGGCCTTCTTCCTAACAATT-TTTGTAAAG-TCTAAGTTTGTGCC-TCAAAC-G
401 --TCATAA-TAA-----TC--CC---C-ATTCTTT-TCAGGAT-T-AG---GCACCAT-AAACAT
* ** * * * *
3616163 AGACAAACATGGACTCTA-GA-A-ATGATCTTCA-GTC
445 AGTC-TTC-T-TA-T-TAGGATACATCATATTGATG-C
** * * * * *** *
3616197 ATTTTGGGATTAGGCACTATAAA-AC-ATATTCTCCA-C-ATTAGGGTAAATGATATTGAAGATT
1 --TTT-GG-TTTTGCA--AGAAAGGCTTTTTTC-CCACCAATTTTTGTAAA-G-T-CT-AAG---
* * * **** * * * * **
3616258 TTCTTTTGCTTGGAAATCTTTTCATTACCT-TACTTTCCT--TAA-AATC-AAAGTTCATCTCTT
52 TTC--GTGCCT-CAAAT-GAGACA-AACATGGA--TT-CTAGTAATGATCTTCA-TTCAT-T-TT
** * * * ** * * * * ** *
3616318 -AAATAAGACAACCATCGATTCTTGTAACAGTCTCCATTCCTTTCAAGACTGCGAA-GCCA--CA
106 GTGATTAGGC-ACTAT--AAAC-----ACATTCTCC--T-CATT-AGGA-T--AAATGATATTGA
** ** * * *
3616379 ACACATTCTCTT-CACTAGGATACATGGTATTGATGCTTTGGTGTCGCAAGAAATGCTTTTCATT
156 TGATTTTCTTTTGCA-T-GGA-A-AT-CT-TT--T-C-TT--TG-C-C--------CTATT--TT
* * * ** * * * * * * *
3616443 CCACCATTTTTTATGGAGTCAAGGTTTGTCTCTTATATAAGACAAACAGCAATACT--TATGCTA
197 ---CC-----TTA--AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTA-AC-A
* * * * * * * * * * * ***
3616506 ATCCCCAATCTTTT-AAGGATTAGGCA-CCATAAACATAGT-CTTCTCACTAGCATACGTCATAT
250 GTCTCCATTCTTTTCAA-GATTGGGAAGCCA-AAACACATTCCCT-TCATTAGGATACATGGCAT
** * * * * *
3616568 TGACACTTTGGTTTTGCAAGAAAAGC-TTT-TTTCCTACCAATTTTTG-TA-AGGTCTAAGTTCG
312 TGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC-ACC-ATTTTTGATAGA-ATCAAAGTTTG
* * * ** *
3616629 TGC-CTCAAATTAGACAAACATTGAAT-CT-AGTAATAATCTTCAATCATTTT--GTGATTAGGC
374 T-CTCTTATATAAGACAAACATT-AATACTCA-TAATAATCCCCATTC-TTTTCAG-GATTAGGC
* * * * * * * *
3616689 ACTATAAACAGATTCTCCTCATTAGGATAAATGATATTGATGA
434 ACCATAAACATAGTCTTCTTATTAGGATACATCATATTGATGC
** ** ** ** * * * * *
3616732 TTTACTTTTAG-AAGAAAATCTTTTCTTTGC-CTTATTTTCCT-TAAAATCAAAATTCATCTCCT
1 TTTGGTTTT-GCAAGAAAGGCTTTT-TTCCCACCAATTTT--TGTAAAGTCTAAGTTCGT-GCCT
* * ** * * * * *** * *
3616794 -AAATAAGGCAAGA-ATCAATTCTCGTAA-CAGTCTCCATTCCTTTCAAG-TCT-GCGAAGCCA-
61 CAAATGAGACAA-ACATGGATTCTAGTAATGA-TCTTCATTCATTTTGTGAT-TAG-GCA-CTAT
* * * ** * * *
3616853 AAACACATTC-CCTTCATTAGGATACATGGTATTGATGCTTTGGTGTCGCA-GGAAAAGCTTTT-
121 AAACACATTCTCC-TCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGG-AAATCTTTTC
* * * *** ** ** * * * * * *
3616915 TTTTCCATCGTTTTTGATGGAATCAAAGTTTGTCTCTTATATAAGACAAACAGT-AATACTCAT-
184 TTTGCCCT-ATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCA-TCGATTCTCGTA
* * * * * * * * * * * *
3616978 GCTAATC-CGCAATCTTTTCAAGATTAGGCA-CCATAAACATAGT-CTTCTCACTAGCATACGTC
247 AC-AGTCTC-CATTCTTTTCAAGATTGGGAAGCCA-AAACACATTCCCT-TCATTAGGATACATG
** ** * * * * *
3617040 ATATTGACACTTTGGTTTTGCAAGAAAAGC-TTT-TTTCCTACCAATTTTTG-TA-AGGTCTATG
308 GCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC-ACC-ATTTTTGATAGA-ATCAAAG
* * * * * ** * *
3617101 TTCGTGC-CTCAAATCAGACAAACATTGAAT-CT-AGTAATGATCTTCAATCATTTT--GTAATT
370 TTTGT-CTCTTATATAAGACAAACATT-AATACTCA-TAATAATCCCCATTC-TTTTCAG-GATT
* * * * * *
3617161 AGGCACTAT-AA-ATAGATTTTCCTCATTAGGATAAATGATATTGATGA
430 AGGCACCATAAACATAG-TCTT-CTTATTAGGATACATCATATTGATGC
** * * * ** ** ** * * * *
3617208 TTTACTTATGGATGAAAATCTTTTCTTTGC-CTTATTTTCCT-TAAAATCTAAATTCATCTCCT-
1 TTTGGTTTTGCAAGAAAGGCTTTT-TTCCCACCAATTTT--TGTAAAGTCTAAGTTCGT-GCCTC
* * * * * * ** * * * *
3617270 AAATAAGACAAGCATCGATTCTCGTAA-CAGTCTCCATTC-TTTTCAAGACTGGGAAGCCA-AAA
62 AAATGAGACAAACATGGATTCTAGTAATGA-TCTTCATTCATTTT-GTGATTAGGCA-CTATAAA
* * ** * ** * * * * *
3617332 CATATTC-CCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT-
124 CACATTCTCC-TCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTG
* * * *** * * * * * * *
3617395 CCATTCTTTTCTTTCTGATTAGGTACTATAAACATATCC-TAAAAAAGACAAGCATTGATCCTCG
188 CC-CTATTTTCCTTAAAATCA--AAGT-T---CAT-CCCTTAAATAAGACAAGCATCGATTCTCG
* * * * *
3617459 TAATAGTCACCATTCTTTTCAAGATTGGGTAGCCAAAACACATTCCCTTCATTAGGATACGTGCC
245 TAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGC
* * * * *
3617524 ATTGATGCCTTGGTTTTGCAACAAAAGCTTTTCTTTCCACCTTTTTTGATAGAATCAAAGTTTGT
310 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGT
* * * * * *
3617589 CTCTTATATAAGACAAACGTGAAAACTCATACTAATCCCCAATCTTTTTAGGATTAGGCACCATA
375 CTCTTATATAAGACAAACATTAATACTCATAATAATCCCCATTCTTTTCAGGATTAGGCACCATA
*
3617654 AACATAGTCTTCTTACTAGGATACATCATATTGATGC
440 AACATAGTCTTCTTATTAGGATACATCATATTGATGC
*
3617691 TTTGGTTTTGCAAGAAAGGCTTTTTT-CCACCAATTTTTATAAAGTCTAAGTTCGTGCCTCAAAT
1 TTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
** * * *
3617755 GAGACTGACATAGATTCTAGTAATGATCTTCATTCATATTGTGATTAGGCACAATAAACACATTC
66 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* * * * *
3617820 TTCTCATTAGGATAAATGATATTAATGATTTTGTTTTTGCATGAAAATATTTTCTTTGCCCTATT
131 TCCTCATTAGGATAAATGATATTGATGATTTT-CTTTTGCATGGAAATCTTTTCTTTGCCCTATT
* * *
3617885 TTCCTTAAAATCAAAGTTCATCCCCTAAATAAGACAAGCATTGATTCTCGGAACAGTCTCCATTC
195 TTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTC
* * * * * *
3617950 CTTTCAAGACTGGGATGCCAAAACACATTCTCTTCATTAGGATACATCGCATTGATGCTTTGCTG
260 TTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTG
* * * *
3618015 TCACAACAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTTGTCTCTTATATAAGACG
325 TCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACA
* * * * *
3618080 AACATGAATAGTCATAGA-AATCTCCATTCTTTTCTTGG-TTAGGCACCATAAACTTAGTCTTCT
390 AACATTAATACTCATA-ATAATCCCCATTCTTTTC-AGGATTAGGCACCATAAACATAGTCTTCT
* *
3618143 TTTTAGGATACATGATATTGATGC
453 TATTAGGATACATCATATTGATGC
* * * *
3618167 TTTGGTTTTGCAGGAAAGG-TATTTTCCCACCAATTTTTGTAAAGTATAAGTTTGTGCCTCAAAT
1 TTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* * * * * * * *
3618231 GTGACAAACTTGGATTCTAGTGATGATCTTAATTCATTTTGTGATTAGGCTCCAGAAACACATTT
66 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* * ** * *
3618296 TCCTCAATAGGATAAATGATATTGACGATTTTCTTTCACATGTAAATCTTTCCTTTGCCCTATTT
131 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTT
* * ** * * *
3618361 TCCTTAAAATCAAAGTTCTTCCCCTAAATAAGACCCGCATCGATTCTCATAACATTCTCCATTCC
196 TCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCT
* * **
3618426 TTTCGAGACTGGGAAGCCAAAACACATTTTCTTCATTAGGATACATGGCATTGATGCTTTGGTGT
261 TTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGT
* * * **
3618491 CGCAAAAAAAGTTTTTCTTTCCTCTGTTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAA
326 CGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAA
* * * * * *
3618556 ACATGAATACGCGTACA-AAT-CCCATTCTTTT-TGTTGACTAGGAACCATAAACATAGTCTTCT
391 ACATTAATACTCATA-ATAATCCCCATTCTTTTCAG--GATTAGGCACCATAAACATAGTCTTCT
* * *
3618618 CATTAGCATACATTATATTGATGC
453 TATTAGGATACATCATATTGATGC
* * * * * *
3618642 TTTGGATTTGCCAGAAATGCTTTTTTCCCACCAATTTTTGTAAGGTCTAAGTTTGTGGCTCAAAT
1 TTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* ** * ** * *
3618707 GAGACAAACATGGATTTTAGCGATGAACTTGGTTCATTTTGTGATTAGGCACTAGAAAGACATTC
66 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* * *
3618772 TCCTCAATAGGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTATCTTTGCCCTATTT
131 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTT
* * * *
3618837 TTCTTAAAATCAAAATTCATTCCTTGAATAAGAC-AGACATCGATTCTCGTAACAGTCTCCATTC
196 TCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAG-CATCGATTCTCGTAACAGTCTCCATTC
* * ** * * *
3618901 CTTTCAAGACTGGGAAGCCAAAACACATTCTTTTTATTAGGATACATGGCATAGACGCTTTGGTG
260 TTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTG
* * * * *
3618966 TCACAAGAAACGCTTTTCTTTACACCGTTTTTGATAGAATCAAAGTTTATCTCTTATATTAA-AC
325 TCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATA-TAAGAC
* ** * * *
3619030 AAACATTAATATTCATACA-AATCCCCATT-TTTTTGGGATTAGGCAACATAAACATATTCTTGT
389 AAACATTAATACTCATA-ATAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCT
* * *
3619093 CATTAGGATATATGATATTGATGC
453 TATTAGGATACATCATATTGATGC
* * ** **
3619117 TTT-GTTTCGCAAGAAAGGCTTTCTTCTAACCAATTTTTGTAAAGTCTAAGTTTATGCCTCAAAT
1 TTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* * *
3619181 AAGACAAACAAGGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
66 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* * * *
3619246 -CCTTCATTAGGATAAATGATATTGAAGACTTTTTTTTTGCATAGAAATCTTTTCTTTGCCCCAT
131 TCC-TCATTAGGATAAATGATATTGATGA-TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTAT
* * *
3619310 TTT-CTTGAAAGTCAAAGTTCATGCCTTAAATAAGAC-AGCCATCGATTCTCGTAACGGTCTCCA
194 TTTCCTT-AAAATCAAAGTTCATCCCTTAAATAAGACAAG-CATCGATTCTCGTAACAGTCTCCA
** * * *
3619373 TTCTGTTT-AAGGCTGGGAAGCCGAAACACATTCTCTTCATTAGGATACATCGCATTGATGCTTT
257 TTCT-TTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTT
* * *
3619437 GTTGTCACAACAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAA
321 GGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAA
* * * * *
3619502 GACAAACATGAATAGTCATAGA-AATCTCCATTCTTTTCTTGG-TTAGGCACCATAAACTTAGTC
386 GACAAACATTAATACTCATA-ATAATCCCCATTCTTTTC-AGGATTAGGCACCATAAACATAGTC
* * *
3619565 TTCTTTTTAGGATACATGATATTGATGT
449 TTCTTATTAGGATACATCATATTGATGC
* * *
3619593 TTTGGTTTTGCAAGAAAGG-TATTTTCCCACCAATTTTTGTAAAGTATAAGTTTGTGCCTCAAAT
1 TTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* * * * * * *
3619657 GTGACAAACTTGGATTCTAGTGATGATCTTAATTCATTTTGTGATTAGGCTCTAGAAACACATTT
66 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* ** *
3619722 TCCTCAATAGGATAAATGATATTGACT-ATTTTCTTTCACATGGAAATCTTTCCTTTGCCCTATT
131 TCCTCATTAGGATAAATGATATTGA-TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATT
* * ** * * **
3619786 TTCCTTAAAATCAAAGTTCATCCCCTAAACAAGACCCGCATCGATTCTTGTAATAGTCTCTGTTC
195 TTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTC
* * * * *
3619851 CTTTCATGACTGGGAAGCCAAATCAAATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTG
260 TTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTG
* * * * * *
3619916 TTGCAAGAAAAGCTTTCCTTTCGATCATTTTTGATAGAATCAAAGTTTGCCTCTTATATACGACA
325 TCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACA
** * *
3619981 AACATTAATACTCATACA-AATCCCCATTCTTTTCTTGATTAGGCACCATAAACATAGCCTTCTG
390 AACATTAATACTCATA-ATAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTT
* ***
3620045 ATTAGGATAGA-CGATATTGACAT
454 ATTAGGATACATC-ATATTGATGC
* * * * *
3620068 TTTAGTTATGCAAGAAAGGC-ATTTTCCCACCAATTTTTGTAAAGCCTAAGTTTGTGCCTCAAAT
1 TTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
** * *
3620132 GAGACAAACATATATTCTAGTGACGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
66 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* * * *
3620197 TCCTCTTTAGGATAAATGGTATTGATGATTTTCTTTTACATGGAAATCCTTTCTTTGCCCTATTT
131 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTT
* * * * *
3620262 TCCTTAAAATCAAAGTTCTTCCCGTAAATAAGACACGCATCGATTCTCATAACAGTCTCCATTCC
196 TCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCT
* * *
3620327 TTTCAAGA-TGGGAAGCCAAAACACAATCCCTTCATTAGGATACATGGCATTGATACTTTGGTAT
261 TTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGT
* * *
3620391 CGCAAGAAAAGCTTTTCCTTCCACCATTTTTAATAGAATCAAGGTTTGTCTCTTATATAAGACAA
326 CGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAA
* * * * * * *
3620456 ACATTACTACTCATGCA-AATCCCCATTTTTTTTAGGATTAGGCACCATAGACATAATCTTCTCA
391 ACATTAATACTCAT-AATAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTA
* * *
3620520 TTAGGATAAACCACATTGATGC
455 TTAGGATACATCATATTGATGC
* * *
3620542 TTTTGTTTTGCAAGAAAGGCATTTTTCCCACCAATTATTGTAAAGTCTAAGTTCGTGCCTCAAAT
1 TTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* * **
3620607 GAGACAAACATTGATTCAAGTGTTGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
66 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* *
3620672 -CCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGCAT-GAAATCTTTTCTTTGCCTTATT
131 TCC-TCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATT
* * * *
3620735 TTCCTGAAAATCAAAGTTCATCCCTAAAATAAGACAAGCATCGATTCTCTTAACAATCTCCATTC
195 TTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTC
** * * * * *
3620800 CGTCCAAGACTGGGAAGCCGAAACACATTCTCTTCATTAGGATACATCGCATTGATGCTTTGGTG
260 TTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTG
* * *
3620865 TCACAACAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGAAA
325 TCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACA
* ** *
3620930 AACATTACTACTCA-AGCA-AATCCCCATT-TTTTTGGGATTAGGCACCATAAACATAGCCTTCT
390 AACATTAATACTCATA--ATAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCT
* * * *
3620992 GATTAGGATAGA-CGATATTGACGT
453 TATTAGGATACATC-ATATTGATGC
* * * * * * * *
3621016 TTTAGTTATGCAAGAAAGGTTTTTTTTCCACCAATTATTGTAAAGTCTTAGTTTGCGCCTCAAAT
1 TTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* ** *
3621081 GAGACAAACATTGATTCTAGTGCTGATCTTCATTCATTCTGTGATTAGGCACTATAAACACATTC
66 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* *
3621146 -CCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGCATGGAAAACTTTTCTTTGCCCTATT
131 TCC-TCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATT
* **
3621210 TTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCGTTAATTCTCGTAACAGTCTCCATTC
195 TTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTC
** * * * * *
3621275 CATTCAAGACTGGGAAGCCAAAACACATTCTCTTCATTAAGATACATTGCATTAATGCTTTGGTG
260 TTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTG
* * *
3621340 TCACAACAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTTGTCTCTTATATAAGACA
325 TCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACA
* * * * *
3621405 AACATGAATAGTCATAGA-AATCTCCA-TCTTTTCTTGG-TTAGGCACCATAAACCTAGTCTTCT
390 AACATTAATACTCATA-ATAATCCCCATTCTTTTC-AGGATTAGGCACCATAAACATAGTCTTCT
* * *
3621467 TTTTAGGATACATGATATTGATGT
453 TATTAGGATACATCATATTGATGC
* * ** *
3621491 TTTGGTTTGGCAGGAAAGG-AATTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAAT
1 TTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* *
3621555 GAGACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
66 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* **
3621620 -CCTTCATTAGGATAAATGATATTGATG--TTT-TTTTGGATGGAAATCTTTTCTTTGCTTTATT
131 TCC-TCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATT
* * * *
3621681 TT-CTTGAAAATCAAAGTTCATCCCTTAAATAAGTCAAGCATCGATTCCCGCAACAGTCTCCGTT
195 TTCCTT-AAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATT
* * *
3621745 CCTTTCAAGA-TGGGAAGCCAAAACGCATTCCCTTCATTAGGATACATGGCAATGATGCTTTGGT
259 CTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGT
*
3621809 G-CTGCAAGAAAAGCATTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGA
324 GTC-GCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGA
* * * * * * *
3621873 CAAACATTACTACTCATGCA-AATCCCCATTGTTTTTAGGGTTAGGCACCATAGACATAATCTTC
388 CAAACATTAATACTCAT-AATAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTC
* * *
3621937 TCATTAGGATAAACCATATTGATGC
452 TTATTAGGATACATCATATTGATGC
* * * * * **
3621962 TTTTGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTTAGTTTGCACCTCAAAT
1 TTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* * *
3622027 GAGAC--ACATTGATTCCAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
66 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* *
3622090 -CCTTCATTAGGATAAATGATATTGATGATTTTTTTTTTTGCATAGAAATCTTTT-TTTGCCCTA
131 TCC-TCATTAGGATAAATGATATTGATGA--TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTA
3622153 TTTT-CTTAAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCA
193 TTTTCCTT-AAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCA
* * *
3622217 TTCCTTTCAAGACTGGGAAGCCAAAACACATTCTCTTCATTAGGATACATGGCATTGATGCTTTG
257 TTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTG
* * ** *
3622282 GTGTCGCAAAAAAAGCTTTTCTTTCCTCTGTTTTTGATAGAATCAAAGTTTGTTTCTTATATAAG
322 GTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAG
* * **
3622347 ACAAACATGAATACGCATACA-AATCCCCATTCTTTTCTTGATTAGGCACCATAAACATAGTCTT
387 ACAAACATTAATACTCATA-ATAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTT
* *
3622411 CTCATTAGGATACATTATATTGATGC
451 CTTATTAGGATACATCATATTGATGC
* * * * * * *
3622437 TTTGGATTTGCACGAAATGCTTTTTTCCTACCAATTTTTGTAAAGTCTTAGTTTGCGCCTCAAAT
1 TTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* *
3622502 GAGACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
66 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* **
3622567 -CCTTCATTAGGATAAATGATATTGATG--TTT-TTTTGGATGGAAATCTTTTCTTTGCTTTATT
131 TCC-TCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATT
* * * *
3622628 TT-CTTGAAAATCAAAGTTCATCCCTTAAATAAGTCAAGCATCGATTCCCGCAACAGTCTCCGTT
195 TTCCTT-AAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATT
* *
3622692 CCTTTCAAGA-TGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCAATGATGCTTTGGT
259 CTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGT
*
3622756 G-CTGCAAGAAAAGCATTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGA
324 GTC-GCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGA
* * * * * * *
3622820 CAAACATTACTACTCATGCA-AATCCCCATTGTTTTTAGGGTTAGGCACCATAGACATAATCTTC
388 CAAACATTAATACTCAT-AATAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTC
* * *
3622884 TCATTAGGATAAACCATATTGATGC
452 TTATTAGGATACATCATATTGATGC
* * * * **** **
3622909 TTTTGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTTAGTTTACACCTCATTT
1 TTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* * *
3622974 GAGAC--ACATTGATTCCAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
66 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* *
3623037 -CCTTCATTAGGATAAATGATATTGATGATTTTTTTTTTTTGCATAGAAATCTTTT-TTTGCCCT
131 TCC-TCATTAGGATAAATGATATTGATGA---TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCT
3623100 ATTTT-CTTAAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCC
192 ATTTTCCTT-AAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCC
* * * *
3623164 ATTCCTTTCAAGACTGGGAAGCCAAAACACATTCTCTTCATTAGGATACATGGCATTAATGCTTT
256 ATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTT
* * ** *
3623229 GGTGTCGCAAAAAAAGCTTTTCTTTCCTCTGTTTTTGATAGAATCAAAGTTTGTTTCTTATATAA
321 GGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAA
* * **
3623294 GACAAACATGAATACGCATACA-AATCCCCATTCTTTTCTTGATTAGGCACCATAAACATAGTCT
386 GACAAACATTAATACTCATA-ATAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCT
* *
3623358 TCTCATTAGGATACATTATATTGATGC
450 TCTTATTAGGATACATCATATTGATGC
* * * * * * *
3623385 TTTGGATTTGCACGAAATGCTTTTTTCCTACCAATTTTTGTAAAGTCTTAGTTTGCGCCTCAAAT
1 TTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* *
3623450 GAGACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
66 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* *
3623515 -CCTTCATTAGGATAAATGATATTGATGAGTTTT-TTTTGAATGGAAATCTTTTCTTTGCCTTAT
131 TCC-TCATTAGGATAAATGATATTGATGA-TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTAT
* *
3623578 TTT-CTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGCTTCGATTCTCGCAACAGTCTCCAT
194 TTTCCTT-AAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCAT
*
3623642 TCCTTTCAAGA-TGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGG
258 TCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGG
* * *
3623706 TGTCGCGAGAAAAGCTTTTCTTTTCACCATTTTTGATAGAATCAAACTTTGTCTCTTATATAAGA
323 TGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGA
* * * * * * *
3623771 CAAACATTACTACTCATGCA-AATCCCCATTTTTTTTAGGATTAGACACCATAGACATAATCTTC
388 CAAACATTAATACTCAT-AATAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTC
* * *
3623835 TCATTAGGATAAACCATATTGATGC
452 TTATTAGGATACATCATATTGATGC
* * * * ** * * *
3623860 TTTGGTTTCGCGAGAAATGCTTTTTTTCGGCCAATTATTGTAAAGTCTAAGTTTGCGCCTCAAAT
1 TTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* * **
3623925 GAGACAAAAATTGATTCTAGCGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
66 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* *
3623990 CCCTCATTAGGATAAATGATATTGATGATTTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATT
131 TCCTCATTAGGATAAATGATATTGATGA-TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATT
3624055 TTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTC
195 TTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTC
* * * * * *
3624120 CTTTCAAGATTGGGAAGCCGAAACACATTCTCTTCTTTAGGATACATCGCATTGATGCTTTGGCG
260 TTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTG
* * * *
3624185 TCACAACAAAAGCTTTTCTTTCTACCATTTTCGATAGAATCAAAGTTTGTCTCTTATATAAGACA
325 TCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACA
* * * *
3624250 AACATGAATACTCATAGA-AATCTCCATTCTTTTCTTGG-TTAGGCACCATAAATATAGTCTTCT
390 AACATTAATACTCATA-ATAATCCCCATTCTTTTC-AGGATTAGGCACCATAAACATAGTCTTCT
* * *
3624313 TTTTAGGATACATGATATTGATGT
453 TATTAGGATACATCATATTGATGC
* *
3624337 TTTGGTTTTGCAAGAAAGG-TATTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAAT
1 TTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* * *
3624401 GTGGCAAACTTGGATTCTAG-AGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
66 GAGACAAACATGGATTCTAGTA-ATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
* *
3624465 C-CCTTCATTAGGATAAATGGTATTGATGA-TTT-TTTTGACATGGAAATCCTTTCTTTGCCCTA
130 CTCC-TCATTAGGATAAATGATATTGATGATTTTCTTTTG-CATGGAAATCTTTTCTTTGCCCTA
* * * *
3624527 TTTTCCTTAAAATCAAAGTTCTTCCCGTAAATAAGACACA-CATCGATTCTCATAATAGTCTCCA
193 TTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACA-AGCATCGATTCTCGTAACAGTCTCCA
* *
3624591 TTCCTTTCAAGA-TGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTG
257 TTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTG
3624655 GTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAG
322 GTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAG
* * * *
3624720 ACACAAACATTACTACTCATGCAAT--TCCCCATTTTTTTTAGGATTAGGCACCATAAACATAGC
387 --ACAAACATTAATACTCAT--AATAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGT
* * * *
3624783 CTTCTGATTAGGATAGA-CAATATTGACGT
448 CTTCTTATTAGGATACATC-ATATTGATGC
* * * *
3624812 TTTAGTTATGCAAGAAAGGC-ATTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAAT
1 TTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
** *
3624876 GAGACAAACATATATTCTAGTGATGATCTTCATTCA-TTTGTGATTAGGCACTATAAACACATTC
66 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* * * * *
3624940 -CCTTCATTAGGATAAATGATGTTGAAGACTTTTTTTTTGCATAGAAATCTTTTCTTTGCCCCAT
131 TCC-TCATTAGGATAAATGATATTGATGA-TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTAT
* * * *
3625004 TTT-CTTGAAAATCAAAGTTCATGCCTTAAATAAGACAGGCATAGATTCTCGTAACGGTCTCCAT
194 TTTCCTT-AAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCAT
* ** * * * *
3625068 T-TCGTTCAAGGCTGGGATGCCGAAACACATTCACTTCATTAGGATACATCGCATTGATGCTTTG
258 TCT-TTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTG
* * * * *
3625132 GTGTCACAACAAAAGCTTTTCTTTCCGCCATTTTTGATAGAATCAAAGTTTGTCTCTTACACAAG
322 GTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAG
* ** * * *
3625197 ATAAACACGAATACTCATAGA-AATCTCCATTCTTTTCTTGG-TTAGGCACCATAAACCTAGTCT
387 ACAAACATTAATACTCATA-ATAATCCCCATTCTTTTC-AGGATTAGGCACCATAAACATAGTCT
* * *
3625260 TCTTTTTAGGATACATGATATTGATGT
450 TCTTATTAGGATACATCATATTGATGC
* *
3625287 TTTGGTTTTGCAAGAAAGG-TATTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAAT
1 TTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* * * * *
3625351 GTGGCAAACTTGGATTCTAG-AGATGATCTTCATTCATTTTATGATTAGGCACTGTAAACACATT
66 GAGACAAACATGGATTCTAGTA-ATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
* * *
3625415 C-CCTTCATTAGGATAAATGGTATTGATGATTTTC-TTTGACAGGGAAATCCTTTCTTTGCCCTA
130 CTCC-TCATTAGGATAAATGATATTGATGATTTTCTTTTG-CATGGAAATCTTTTCTTTGCCCTA
* * *
3625478 TTTTCCTTAAAATCAAAGTTCTTCCCGTAAATAAGACACA-CATCGATTCTCATAACAGTCTCCA
193 TTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACA-AGCATCGATTCTCGTAACAGTCTCCA
* *
3625542 TTCCTTTCAAGA-TGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTG
257 TTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTG
* *
3625606 GTGTCGCAAGAAAAGCTTTTCTTTCCATCATTTTTGATAGAATCAAAGTTTGCCTCTTATATAAG
322 GTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAG
** * * * * *
3625671 ACAAACATTGCTACTCATGCA-AATCCCCATTTTTTTTAGGATTAGGCACCATAGACATAATCTT
387 ACAAACATTAATACTCAT-AATAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTT
* * *
3625735 CTCATTAGGATAAACCATATTGATGC
451 CTTATTAGGATACATCATATTGATGC
* ** * * * * * * *
3625761 TTTTGTTCCGCAAGAAATGTTTTTTTCCCACAAATTATTGTAATGTCTAAGTTTGCGCCTCAAAT
1 TTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* * * * * *
3625826 GAGACAAACATTGATTCTAGTGATGATCTTTACTCATTTTGTGATTAGGCACCACAAACACATT
66 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
3625890 TTGATGAAAA
Statistics
Matches: 21225, Mismatches: 4164, Indels: 2352
0.77 0.15 0.08
Matches are distributed among these distances:
466 9 0.00
467 26 0.00
468 15 0.00
469 23 0.00
470 431 0.02
471 395 0.02
472 396 0.02
473 407 0.02
474 3771 0.18
475 5326 0.25
476 6712 0.32
477 1307 0.06
478 221 0.01
479 30 0.00
480 11 0.00
481 95 0.00
482 166 0.01
483 127 0.01
484 21 0.00
485 11 0.00
486 14 0.00
487 7 0.00
488 20 0.00
489 6 0.00
490 7 0.00
491 2 0.00
492 8 0.00
493 12 0.00
494 17 0.00
495 10 0.00
496 3 0.00
497 3 0.00
498 4 0.00
499 19 0.00
500 26 0.00
501 59 0.00
502 41 0.00
503 60 0.00
504 34 0.00
505 50 0.00
506 41 0.00
507 56 0.00
508 82 0.00
509 54 0.00
510 73 0.00
511 28 0.00
512 45 0.00
513 45 0.00
514 40 0.00
515 27 0.00
516 26 0.00
517 19 0.00
518 20 0.00
519 13 0.00
520 16 0.00
521 40 0.00
522 30 0.00
523 24 0.00
524 26 0.00
525 43 0.00
526 43 0.00
527 31 0.00
528 28 0.00
529 26 0.00
530 6 0.00
531 31 0.00
532 15 0.00
533 22 0.00
534 21 0.00
535 12 0.00
536 28 0.00
537 15 0.00
538 11 0.00
539 17 0.00
540 26 0.00
541 19 0.00
542 23 0.00
543 10 0.00
544 2 0.00
545 14 0.00
546 22 0.00
547 20 0.00
548 15 0.00
549 2 0.00
550 5 0.00
551 6 0.00
552 8 0.00
553 10 0.00
554 11 0.00
555 3 0.00
556 12 0.00
557 11 0.00
558 15 0.00
559 15 0.00
560 4 0.00
561 12 0.00
562 3 0.00
563 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (476 bp):
TTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTT
TCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCT
TTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGT
CGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAA
ACATTAATACTCATAATAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTAT
TAGGATACATCATATTGATGC
Found at i:3600706 original size:951 final size:945
Alignment explanation
Indices: 3598852--3603784 Score: 5843
Period size: 951 Copynumber: 5.2 Consensus size: 945
3598842 AGAATGAAAG
* *
3598852 TTTGGTTTTGCAAGAAAGGCTTTTTTTCCCACCAATTTTTGTAAATTTTAAGTTCGTGCCTCAAA
1 TTTGGTTTTGCAAGAAAGGC-TTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAA
* * *
3598917 TGAGACAGACGTGGATTCTAGTAATGATCTTCATTCATTTTGTGACTAGGCATA-ATAACACATT
65 TGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCATATA-AACACATT
* * *
3598981 CTCCTTATTAGGATAAATGATATTGACGATTTTCTTTTGCATGAAAATCATTTCTTTGCCCTATT
129 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATT
* * * * * * * * **
3599046 TTCCTTAAAGTCAAAATTCATCCCCTAAATAAGACAAGCATTGTTTCTTGGAACAGTTTTTATTC
194 TTCCTTAAAATCAAAGTTCATCTCCTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTC
* * * * * *
3599111 TTTTAAACATTTGGAAGCCAAAACACATTCCCTTCCTTAGGATACGTGACATTGATGCTTTGGTG
259 CTTTAAAGACTGGGAAGCCAAAACACATTCCCTTCCTTAGGATACATGGCATTGATGCTTTGGTG
* * *
3599176 TTGCAAGAAATG-TTTTACTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGAC
324 TCGCAAGAAAAGCTTTT-CTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGAC
* * * * * * * * * *
3599240 AATCAAGAATAGTC---AT--TCCGCATTCTTTTTAGGAATAAGCACCACAGACATAGTCTTCTC
388 AAACAATAATACTCATAATAATCC-CAATCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTT
* * * * * *
3599300 ATTAGGATACATGATATTGATGTTTTGGTTTCACAAGACAGTCCTTTTTCCCACCAATTTTTGTA
452 ACTAGGATACATCATATTGATGCTTTGGTTTTACAAGAAAG-GCTTTTTCCCACCAATTTTTGTA
* * * *
3599365 AAGTTTAAGTTAATGCCTCAAATGAGAAAGACATGGATTCTAGTAATGATCTTCATTCATTTTCT
516 AAGTCTAAGTTCATGCCTCAAATGAGACAGACATGGATTCTAGTAATGATCTTCATTCATTTTGT
* * * * * * *
3599430 GATTAGGGACAATAAACACGTTCTCTTCATTATGATAAATGATATTTACGATTTTTTTTTGCTTG
581 GATTAGGCACAATAAACACATTCTCCTCATTAGGATAAATGATATTGACGATTTTCTTTTGCATG
* *
3599495 AAAATCTTTTTTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCCTAAAAAAGATAAGCATCG
646 AAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCCTAAAAAAGATAAGCATCG
* * * *
3599560 ATTCTCAAAACAGTCTCTATTCTTTTCAAGATTTGGAAGCCAAAACACATTCCCTTCCTTATGAT
711 ATTCTCGAAACAGTCTC-ATTCTTTTCAAGATTGGGAAGCC-AAA-ACATTCCCTTCATTAGGAT
* * * * * * *
3599625 ACGTGACATTGATGCTTTGGGGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT-AA
773 TCATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAA
* * * * * *
3599689 AGTTTGTCTCTTAAAAAAGACAAACATGAATAGTCATACTAATCCCTATTCATTTCAAGATTAGG
838 AGTTTGTCTCTTATATAAGACAAACATGAATACTCATACTAATCCCTAATCTTTTCAGGATTAGG
** * * * *
3599754 CAATATAAGCATATTCTCGTCATTAGGATACATGATATTGAAGC
903 CACCATAAACATAGTCTC-TCATTAGGATACATCATATTGATGC
* * * * * *
3599798 TTTGGTTTCGCAAGAAAGGCTTTTTTCCCACTAATTTTGGTAAAGTCTATGTTTGTGCCTCTAAT
1 TTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* * * *
3599863 GAGATAAACATGGATTCTCGTAATGATCTTCATTCATTTTGT-ATTTAGGCATATAAACATAATC
66 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGA-TTAGGCATATAAACACATTC
* * * *
3599927 TCCTCAATAGGGTAAATGATATTGATGATTTTCTTTTGCTTGAAAATCTTTTCTTTACCCTATTT
130 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTT
* * *
3599992 TCCTTAAGATCGAAGTTCATCTCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCC
195 TCCTTAAAATCAAAGTTCATCTCCTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCC
* * ** * * * * * *
3600057 TTTCAGGACTACGTAGCCAAAACATATTCCCTTCTTTAGGATACATGGCACTGATGCGTTGGTGA
260 TTTAAAGACTGGGAAGCCAAAACACATTCCCTTCCTTAGGATACATGGCATTGATGCTTTGGTGT
* * * *
3600122 CGTAAGAAAAGCTTTTCTTTCCCCCATTTTTGATAGAATCAAAGTTTGTCTCTCATATAAAACAA
325 CGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAA
* *
3600187 ACATTAATACTCATAATAATCCCAAACCTTTTCAGGATTAGGCACCCATAAACATAGTCTTCTTA
390 ACAATAATACTCATAATAATCCC-AATCTTTTCAGGATTAGGCA-CCATAAACATAGTCTTCTTA
* * * *
3600252 CTAGGATGCATCATATTGATGCTTTGGTTTTGCAAGAAAGGCTTCCTTCCCACCAATTTTTGTTA
453 CTAGGATACATCATATTGATGCTTTGGTTTTACAAGAAAGGCTT-TTTCCCACCAATTTTTGTAA
* * *
3600317 AGTCTAAGTTCGTGCCTCAAATAAGACAGACGTGGATTCTAGTAATGATCTTCATTCATTTTGTG
517 AGTCTAAGTTCATGCCTCAAATGAGACAGACATGGATTCTAGTAATGATCTTCATTCATTTTGTG
** * * * * *
3600382 ATTAGATACCATAAACACATTCTCCTCATTAGGATAAATGATACTGACAAGTTTCTTTTGCATGG
582 ATTAGGCACAATAAACACATTCTCCTCATTAGGATAAATGATATTGACGATTTTCTTTTGCATGA
* * * * *
3600447 AAATCTTTTCTTTGCCCTATTTTCCCTT-AATTCAACGTTCATCCCTTAAATAAGATAAGC-GCT
647 AAATCTTTTCTTTGCCCTATTTT-CCTTAAAATCAAAGTTCATCCCCTAAAAAAGATAAGCATC-
* * *
3600510 GATTCCTTGTAACAGTCTCAGTTCTTTTCAAGATTGGGAAGCCAAAACATTCCATTCATTAGGAT
710 GATT-CTCGAAACAGTCTCA-TTCTTTTCAAGATTGGGAAGCCAAAACATTCCCTTCATTAGGAT
*
3600575 TCATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTTCATCGTTTTTGATAGAATCAA
773 TCATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAA
* *
3600640 AGTTTGTCTCTTATATAAGACAAACATTAATACTCATACTAATCCCCAATCTTTTCAGGATTAGG
838 AGTTTGTCTCTTATATAAGACAAACATGAATACTCATACTAATCCCTAATCTTTTCAGGATTAGG
* * * * *
3600705 CACCATAAACATAGTCTTCTTACTAAGATACATTATATTGATGT
903 CACCATAAACATAGTC-TCTCATTAGGATACATCATATTGATGC
* * ** * *
3600749 TTTGGTTTTGTAAGAAAGGC-ATTTTCTTACCAATTTTTGTAAAGTCTAAGTTTGTGCCTTAAAT
1 TTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* * * * *
3600813 GAGACAAACATGGTTTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCCCTATAAACGCACTC
66 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGG-CATATAAACACATTC
* * * * * *
3600878 TCTTCATTAAGATAAATGATATTGATGATTTACTTTTGGATAAAAATCTTTTCTTTGCCTTATTT
130 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTT
*
3600943 TCCTTAAAATCAAAATTCATCTCCTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCC
195 TCCTTAAAATCAAAGTTCATCTCCTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCC
* * *
3601008 TTTCAAGACTGGGAAGCCAAAACATATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGT
260 TTTAAAGACTGGGAAGCCAAAACACATTCCCTTCCTTAGGATACATGGCATTGATGCTTTGGTGT
** * * *
3601073 CGCAAGAAAAGCTTTTCTTTCCACTGTTTTTTATAGAATCAAAGTTCGTCTCTTATATAAGGCAA
325 CGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAA
** * *
3601138 ACAATAATACTCATACGAATCCCCATTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTACT
390 ACAATAATACTCATAATAATCCCAATCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTACT
* * * * * * *
3601203 AGGATACATCATATTGAAGCTTTTGTTTTTCAGGAAGGGCTTTTTTCCCATCAATTATTGTAAAG
455 AGGATACATCATATTGATGCTTTGGTTTTACAAGAAAGGC-TTTTTCCCACCAATTTTTGTAAAG
* * * * * *
3601268 TC-ATGTTCATGCCTCAAATTAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTGGTAAT
519 TCTAAGTTCATGCCTCAAATGAGACAGACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
* * * * * * * * * *
3601332 TAGGCACTAGAAACATATTCGCCTTATTAGGGTAAATGATATTGATGATTTCCTTTTGCTTGGAA
584 TAGGCACAATAAACACATTCTCCTCATTAGGATAAATGATATTGACGATTTTCTTTTGCATGAAA
* *** * *
3601397 ATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCTATTAAAAAAGACAAGCATTGATT
649 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCCTAAAAAAGATAAGCATCGATT
* * * * * *
3601462 CTTGTAACAGTCTCCATTCTTTTCAAGACTAGGCAGCCAAAACACATTCCCTTCATTAGGATACA
714 CTCGAAACAGTCT-CATTCTTTTCAAGATTGGGAAGCC-AAA-ACATTCCCTTCATTAGGATTCA
* * ** * * *
3601527 TGGCATTGATGCCTTAGTGTCGCAAGAAAAGCTTTTCTTTCTGTCGATTTTGATACAATCAAACT
776 TGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGT
* * *
3601592 TTGTCTCTTTTATAAGACAAACATGAATACTCATACTAATCCCCAATCTTTTCAGGACTAGGCAC
841 TTGTCTCTTATATAAGACAAACATGAATACTCATACTAATCCCTAATCTTTTCAGGATTAGGCAC
* *
3601657 CATAAACATAGTCTTCTTACTAGGATACATCATATTGATGC
906 CATAAACATAGTC-TCTCATTAGGATACATCATATTGATGC
* * * * *
3601698 TTTGGTTTTGCAAGAAAGACTTTTTTCCCACCAACTTTTGTGAAGTCTAAGCTCGCGCCTCAAAT
1 TTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* * *
3601763 GTGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTGTGATTAGGCACAATAAACACATTC
66 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCA-TATAAACACATTC
* ** * *
3601828 TCCTCCTTAGGATAAATGATATTGACAATTTTTTTTTGCATGAAAATCTTTTCTTTGCCTTATTT
130 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTT
* * * * * * * *
3601893 TCCTTAAAATTAAAGCTCATCCCCTAAATAAGATAAGCATTGATTCTCGAAAGAGTCTCCATTCT
195 TCCTTAAAATCAAAGTTCATCTCCTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCC
* * * * * * ** *
3601958 TTTAAAGATTTGGAAGTCAAAACACGTTCCCTTCCTTAAGATACGTCACATTGATACTTTGGTGT
260 TTTAAAGACTGGGAAGCCAAAACACATTCCCTTCCTTAGGATACATGGCATTGATGCTTTGGTGT
* * * * * * *
3602023 TGCAAGAAAAGCTTTACTTTCCACAAGTTTTGATAGAGTCAAAGTTTGCCTTTTATATAAGACAA
325 CGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAA
* * * * * ** * * * *
3602088 ACAAGAATAGTCATACTAACCCCCATTCTTTTCAGGAACAGGCACCACATACATAGTCTTCTCAT
390 ACAATAATACTCATAATAA-TCCCAATCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTAC
* * * * * *
3602153 TGGGATACA-CA-ATATCATTGTTTTGGTTTCACAAGACAGTCCTTTTTCCCACCAATTTTTGTA
454 TAGGATACATCATAT-TGA-TGCTTTGGTTTTACAAGAAAG-GCTTTTTCCCACCAATTTTTGTA
* *
3602216 AAGTCTAAGCTCATGCCTTAAATGAGACAGACATGGATTCTAGTAATGATCTTCATTCATTTTGT
516 AAGTCTAAGTTCATGCCTCAAATGAGACAGACATGGATTCTAGTAATGATCTTCATTCATTTTGT
** **
3602281 GATTAGGCACAATAAACACATTCTCCTCATTAGGATAAATGATATTGGTGATTTTCTTTCACATG
581 GATTAGGCACAATAAACACATTCTCCTCATTAGGATAAATGATATTGACGATTTTCTTTTGCATG
* *
3602346 AAAAACTTTTTTTTG-CCTCA--TTCCTTAAAATCAAAGTTCATCCCCTAAAAAAGATAAGCATC
646 AAAATCTTTTCTTTGCCCT-ATTTTCCTTAAAATCAAAGTTCATCCCCTAAAAAAGATAAGCATC
* * * *
3602408 AATTCTCGAAACCGTCTCCATTCTTTTCAAGATTTGGAAGCCAAAACCCATTCCCTTCCTTAGGA
710 GATTCTCGAAACAGTCT-CATTCTTTTCAAGATTGGGAAGCCAAAA--CATTCCCTTCATTAGGA
* *
3602473 -T-ATGTGACATTGATGCTTTGGGGTAGCAAGAAAAGCTTTTCTTTCCA-CTGTTTTTGATAGAA
772 TTCATG-G-CATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCATC-GTTTTTGATAGAA
* * * * * * *
3602535 TCAAAGTTTGCCTCTTAAATATGACAAACATGAATAGTGATACTAATCCCTATTCTTTTCAAGAT
834 TCAAAGTTTGTCTCTTATATAAGACAAACATGAATACTCATACTAATCCCTAATCTTTTCAGGAT
** * * * ** *
3602600 TAGGCAATATAAGCATATTCTTGTCATTAGGATACAAGATATTGAAGC
899 TAGGCACCATAAACATAGTC-TCTCATTAGGATACATCATATTGATGC
* * * *
3602648 TTTGGTTTCGCAAGAAAAGCTTTTTTCCCACAAATTTTGGTAAAGTCTAAGTTCGTGTGCCTCAA
1 TTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTC--GTGCCTCAA
* * * *
3602713 ATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGTTTAGGCACATAAACATATT
64 ATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCATATAAACACATT
* * * *
3602778 ATCCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCTTGAAAATCTTTTCTTTACCCTATT
129 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATT
* * * *
3602843 TTCCTTAAAATCAAAGTTCATCTCTTAAATAAGACAAGCAACGATTCTCGTAATAATCTCCATTC
194 TTCCTTAAAATCAAAGTTCATCTCCTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTC
* * * * *
3602908 CTTTGAAGACTGGGAACCCAAAACACATTCCCTTCTTTAGGATTCATGGCATTAATGCTTTGGTG
259 CTTTAAAGACTGGGAAGCCAAAACACATTCCCTTCCTTAGGATACATGGCATTGATGCTTTGGTG
* * * * * * *
3602973 TCGCAAGAAAAACTTTCCTTTCCATCGTTTTTTATAGAATTAAAGTTTGTCTCTTATATAAGGCA
324 TCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACA
*
3603038 AACATTAATACTCATACA-AATCCCCAATCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTT
389 AACAATAATACTCATA-ATAAT-CCCAATCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTT
* * *
3603102 ACT-GCGATACATCATATTGATGCTTTGGTTTTGCAAGAAAGGCTTCTTTCACACTAATTTTTGT
452 ACTAG-GATACATCATATTGATGCTTTGGTTTTACAAGAAAGGCTT-TTTCCCACCAATTTTTGT
* * * * * *
3603166 AAAGTCTAAGTCCGTGCCTTAAATGAGACAGGCGAT-GATTCAAGTAATGATCTTCTTTCATTTT
515 AAAGTCTAAGTTCATGCCTCAAATGAGACAGAC-ATGGATTCTAGTAATGATCTTCATTCATTTT
** * *
3603230 GTGATTAGGTGCAATAAACACATTCTCCTCATTAGGTTAAATGATATTGACAATTTTCTTTTGCA
579 GTGATTAGGCACAATAAACACATTCTCCTCATTAGGATAAATGATATTGACGATTTTCTTTTGCA
* * * ** *
3603295 TGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATTAAAGTTAATCCCCCAAGTAAGACAAGCAT
644 TGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCCTAAAAAAGATAAGCAT
* * * * *
3603360 CGATTCTCGCAACAGTCTCTATTCCTTTCAAAACTGGGAAGCCAAAACATATTGCCTTCATTAGG
709 CGATTCTCGAAACAGTCTC-ATTCTTTTCAAGATTGGGAAGCCAAAAC--ATTCCCTTCATTAGG
* * * *
3603425 ATAT-ATGGCATTGATGCTTTGGTGTCACAAGAAAAGTTTTTCTTTCCATCATTTTTTATAGAAT
771 AT-TCATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCATCGTTTTTGATAGAAT
* * * *
3603489 CAAAGTTTGTCACATATCTAAGACAAACATGAATACTCATACTAATCCCTAATCTTTTCAGGATA
835 CAAAGTTTGTCTCTTATATAAGACAAACATGAATACTCATACTAATCCCTAATCTTTTCAGGATT
* * *
3603554 AGGCACCATAAACATAGTCTCCTCTTTAGGATACAACATATTGATGT
900 AGGCACCATAAACATAGTCT-CTCATTAGGATACATCATATTGATGC
* *
3603601 TTTGGTTTTGCAAGAAAGAG-ATCTTT-CCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAA
1 TTTGGTTTTGCAAGAAAG-GCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAA
* * * * *
3603664 TGAGACAAAAATGGATTCTAGTGATGATCTTTATTCATTTTATGATTAGGCACTATAAGCACATT
65 TGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCA-TATAAACACATT
* *
3603729 CTCCTCATGAGGATAAATGATATTGATGATTTTCTTTAGCATGAAAATCTTTTCTT
129 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTT
3603785 ACTACGATGC
Statistics
Matches: 3365, Mismatches: 563, Indels: 113
0.83 0.14 0.03
Matches are distributed among these distances:
944 1 0.00
945 312 0.09
946 24 0.01
947 36 0.01
948 166 0.05
949 280 0.08
950 852 0.25
951 1190 0.35
952 250 0.07
953 247 0.07
954 3 0.00
955 4 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (945 bp):
TTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCATATAAACACATTCT
CCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTT
CCTTAAAATCAAAGTTCATCTCCTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCT
TTAAAGACTGGGAAGCCAAAACACATTCCCTTCCTTAGGATACATGGCATTGATGCTTTGGTGTC
GCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAA
CAATAATACTCATAATAATCCCAATCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTACTA
GGATACATCATATTGATGCTTTGGTTTTACAAGAAAGGCTTTTTCCCACCAATTTTTGTAAAGTC
TAAGTTCATGCCTCAAATGAGACAGACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTA
GGCACAATAAACACATTCTCCTCATTAGGATAAATGATATTGACGATTTTCTTTTGCATGAAAAT
CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCCTAAAAAAGATAAGCATCGATTCT
CGAAACAGTCTCATTCTTTTCAAGATTGGGAAGCCAAAACATTCCCTTCATTAGGATTCATGGCA
TTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTC
TCTTATATAAGACAAACATGAATACTCATACTAATCCCTAATCTTTTCAGGATTAGGCACCATAA
ACATAGTCTCTCATTAGGATACATCATATTGATGC
Found at i:3606371 original size:475 final size:475
Alignment explanation
Indices: 3605129--3609596 Score: 5348
Period size: 474 Copynumber: 9.4 Consensus size: 475
3605119 AATACAAGGC
* * *
3605129 ATTGATGCTTTGGTTTTGCAAGAAAGGCTTCCTTCCCTCCAATTTTTGTAAAGTCTAAGTTCGTA
1 ATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTG
* * * * *
3605194 CCTCAAATGAGACAGATATGGATTCTAGTAATGATCTTCATTCATTCTGTGGTTAGGCACCATAA
66 CCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAA
* ** *
3605259 ACACATTCTCCTCTTTAGGATAAATGATATTGACAACTTTCTTTTGCATGAAAATCTTTTCTTTG
131 ACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTG
* * *
3605324 CCCTATTTTCCTTAAAATCAAAGTTAAT-TCCCCAATTAAGACAAGCATTGATTCTCGTAACAGT
196 CCCTATTTTCCTTAAAATCAAAGTTCATCT-CCCAAATAAGACAAGCATCGATTCTCGTAACAGT
* * *
3605388 CTCCATTCCTTTCAA-AATAGGGAAGCCAAAACATATTCCCTTCATTAGGATACAAGGCATTGAT
260 CTCCATTCCTTTCAAGACT-GGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGAT
* * *
3605452 GCCTTTGGTGTCGCAAGAAAAG-TTTTCTTTCAACCATTTTTGATAGAATCAATGTTTGTCTCTT
324 G-CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCCCTT
* * *
3605516 AAGTAAGACAAACATTAATACACATACTAATCCCCAATCATTTCAGGATTAGGCACCATAAACGT
388 AA-TAAGACAAACATTAATACTCATACTAATCCCCAATCTTTTCAGGATTAGGCACCATAAACAT
* * * * * *
3605581 TGTCTTTTTACTAGGCTGCATCAC
452 AGTCTTCTCACTAGGATACATCAT
* * *
3605605 ATTGAAGTTTTGGTTTTGCAAGAAAGG-TATT-TTCCCACCAATTTCTGTAAAGTCTAAGTTCGT
1 ATTGATGCTTTGGTTTTGCAAGAAAGGCT-TTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGT
* * * *
3605668 GCCTCAAAGGAGACAAACATAGATTCTGGTGATGATCTTCATTCATTTTGTGATTAGGCACTATA
65 GCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
* * * * *
3605733 AACACATTCTCCTCATGAGGATAAATAATATTAATGATTTTCTTTTGCATGGAAATCTCTTC-TT
130 AACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTT
** *
3605797 GCCCTATTTTCCCTT-AAATCAAAGTTCATAC-CTTAAATAAGATAAGCATCGATTCTCGTAACA
195 GCCCTATTTT-CCTTAAAATCAAAGTTCAT-CTCCCAAATAAGACAAGCATCGATTCTCGTAACA
* * * * *
3605860 GTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCATTCATTAGGATACTTGACATTGA
258 GTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGA
* *
3605925 TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCAACCATTTTTGATAGAATCAATGTTTGTCCCTT
323 TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCCCTT
* * **
3605990 AAGTAAGACAAACATTAATACACATACTAATCCCCAATCATTTCAGGATTAGGCAATATAAACAT
388 AA-TAAGACAAACATTAATACTCATACTAATCCCCAATCTTTTCAGGATTAGGCACCATAAACAT
* * * *
3606055 ATTCTTGTCATTAGTATACA-CGAT
452 AGTCTTCTCACTAGGATACATC-AT
* * * *
3606079 ATTGATGCTTCGATTTTGCAAGGAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTATA-TTTGT
1 ATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTA-AGTTCGT
* * **
3606143 GCCTCAAACGAGACAAACATGGATTCCAGTAACAATCTTCATTCATTTTGTGATTAGGCACTATA
65 GCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
* * *
3606208 AACATATTCTCCTCATT-GTG-TAAATGATATTGATGATTTTCTTTTGCTTGGAAATCTTTTCTT
130 AACACATTCTCCTCATTAG-GATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTT
* * * *
3606271 TACCCTATTTTCCTTAAAATCAAAGTTCATCTCTCAAATAGGACAAGCTTCGATTCTCGTAACAG
194 TGCCCTATTTTCCTTAAAATCAAAGTTCATCTCCCAAATAAGACAAGCATCGATTCTCGTAACAG
* **
3606336 TCTCTATTCCTTTCAAGACTACGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGAT
259 TCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGAT
* * * * *
3606401 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTGCACCGTTTTTGGTAGAATTAAAGTTTGTCTCTTA
324 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCCCTTA
* *
3606466 CATAAGACAAACAGTAATACTCATACTAATCCCCAATCTTTTCAAGATTAGGCACCATAAACATA
389 -ATAAGACAAACATTAATACTCATACTAATCCCCAATCTTTTCAGGATTAGGCACCATAAACATA
* *
3606531 GACTTCTCACTAGCATACATCAT
453 GTCTTCTCACTAGGATACATCAT
* * * * *
3606554 ATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTTTCCTACCAATTTTTGTAAGGTCTAAGATCGTG
1 ATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTG
* * * *
3606619 CCTCAAATCAGACAAACATTGAATCTAGTAATGATCTTCAATCATTTTGTGATTAGGCACTATAA
66 CCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAA
* * * * * *
3606684 ATAGATTTTCCTCATTAGGATAAATGATATTGATGATTTACTTTTGGATAAAAATCTTTTCTTTG
131 ACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTG
* * *
3606749 CCTTATTTTCCTTAAAATCAAAATTCATCTCCTAAATAAGACAAGCATCGATTCTCGTAACAGTC
196 CCCTATTTTCCTTAAAATCAAAGTTCATCTCCCAAATAAGACAAGCATCGATTCTCGTAACAGTC
*
3606814 TCCATTCCTTTCAAGACTGGGAAGCCAAAACATATTCCCTTCATTAGGATACATGGCATTGATGC
261 TCCATTCCTTTCAAGACTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGC
** * * *
3606879 TTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTTATAGAATCAAAGTTCGTCTCTTATA
326 TTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCCCTTA-A
* * * *
3606944 TAAGGCAAACAATAATACTCATACGAATCCCC-ATTTTTTCAGGATTAGGCACCATAAACATAGT
390 TAAGACAAACATTAATACTCATACTAATCCCCAATCTTTTCAGGATTAGGCACCATAAACATAGT
*
3607008 CTTCTTACTAGGATACATCAT
455 CTTCTCACTAGGATACATCAT
* * * * * * * * * *
3607029 ATTGAAGCTTTTGTTTTTCAGGAAGGGCTTTTTTCCCATCAATTATTGTAAAGTC-ATGTTCATG
1 ATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTG
* * * * *
3607093 CCTCAAATTAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTGGTAATTAGGCACTAGAA
66 CCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAA
* * * * * * *
3607158 ACATATTCGCCTTATTAGGGTAAATGATATTGATGATTTCCTTTTGCTTGGAAATCTTTTCTTTG
131 ACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTG
* *** * * *
3607223 CCTTATTTTCCTTAAAATCAAAGTTCATCTATTAAAAAAGACAAGCATTGATTCTTGTAACAGTC
196 CCCTATTTTCCTTAAAATCAAAGTTCATCTCCCAAATAAGACAAGCATCGATTCTCGTAACAGTC
* * *
3607288 TCCATTCTTTTCAAGACTAGGCAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGC
261 TCCATTCCTTTCAAGACTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGC
* * ** * * * * *
3607353 CTTAGTGTCGCAAGAAAAGC--TTCTTTCTGTCGA-TTTTGATACAATCAAACTTTGTCTCTTTT
326 TTTGGTGTCGCAAGAAAAGCTTTTCTTTC-CACCATTTTTGATAGAATCAAAGTTTGTC-CCTTA
* *
3607415 ATAAGACAAACATGAATACTCATACTAATCCCCAATCTTTTCAGGACTAGGCACCATAAACATAG
389 ATAAGACAAACATTAATACTCATACTAATCCCCAATCTTTTCAGGATTAGGCACCATAAACATAG
*
3607480 TCTTCTTACTAGGATACATCAT
454 TCTTCTCACTAGGATACATCAT
* * * * * * *
3607502 ATTGATGCTTTGGTTTTCCAAGAAAGACTTTTTTCCCACCAACTTTTGTGAAGTCTAAGCTCGCG
1 ATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTG
* * *
3607567 CCTCAAATGTGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTGTGATTAGGCACAATAA
66 CCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAA
* ** *
3607632 ACACATTCTCCTCCTTAGGATAAATGATATTGACAATTTTTTTTTGCATGAAAATCTTTTCTTTG
131 ACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTG
* * * * * * *
3607697 CCTTATTTTCCTTAAAATTAAAGCTCATC-CCCTAAATAAGATAAGCATTGATTCTCGAAAGAGT
196 CCCTATTTTCCTTAAAATCAAAGTTCATCTCCC-AAATAAGACAAGCATCGATTCTCGTAACAGT
* * * * * * * * * ** *
3607761 CTCCATTCTTTTAAAGATTTGGAAGTCAAAACACGTTCCCTTCCTTAAGATACGTCACATTGATA
260 CTCCATTCCTTTCAAGACTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATG
* * * ** * *
3607826 CTTTGGTGTTGCAAGAAAAGCTTTACTTTCCACAAGGTTTGATAGAGTCAAAGTTTG-CCTTTTA
325 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCC-CTTA
** * * * ** * *
3607890 TATAAGACAAACAAGAATAGTCATACTAACCCCCATTCTTTTCAGGAACAGGCACCACATACATA
389 -ATAAGACAAACATTAATACTCATACTAATCCCCAATCTTTTCAGGATTAGGCACCATAAACATA
* *
3607955 GTCTTCTCATTGGGATACA-CA-
453 GTCTTCTCACTAGGATACATCAT
* * ** * * *
3607976 ATATCATTGTTTTGGTTTCACAAGACAGTCCTTT-TTCCCACCAATTTTTGTAAAGTCTAAGCTC
1 AT-TGA-TGCTTTGGTTTTGCAAGAAAG-GCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTC
* * * *
3608040 ATGCCTTAAATGAGACAGACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACAA
63 GTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTA
* ** * *
3608105 TAAACACATTCTCCTCATTAGGATAAATGATATTGGTGATTTTCTTTCACATGAAAAACTTTTTT
128 TAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCT
* * * *
3608170 TTG-CCTCA--TTCCTTAAAATCAAAGTTCATC-CCCTAAAAAAGATAAGCATCAATTCTCGAAA
193 TTGCCCT-ATTTTCCTTAAAATCAAAGTTCATCTCCC-AAATAAGACAAGCATCGATTCTCGTAA
* * * * * * ** *
3608231 CCGTCTCCATTCTTTTCAAGATTTGGAAGCCAAAACCCATTCCCTTCCTTAGGATATGTGACATT
256 CAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATT
* * **
3608296 GATGCTTTGGGGTAGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTG-CCT
321 GATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCC-
* * * * * * * ** *
3608360 CTTAAATATGACAAACATGAATAGTGATACTAATCCCTATTCTTTTCAAGATTAGGCAATATAAG
385 CTT-AATAAGACAAACATTAATACTCATACTAATCCCCAATCTTTTCAGGATTAGGCACCATAAA
* * * **
3608425 CATATTCTTGTCATTAGGATACAAGAT
449 CATAGTCTTCTCACTAGGATACATCAT
* * * * * *
3608452 ATTGAAGCTTTGGTTTCGCAAGAAAAGCTTTTTTCCCACAAATTTTGGTAAAGTCTAAGTTCGTG
1 ATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTC--G
* *
3608517 TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGTTTAGGCAC-AT
64 TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
* * * *
3608581 AAACATATTATCCTCATTAGGGTAAATGATATTGATGATTTTCTTTTGCTTGAAAATCTTTTCTT
129 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTT
* ** * * *
3608646 TACCCTATTTTCCTTAAAATCAAAGTTCATCTCTTAAATAAGACAAGCAACGATTCTCGTAATAA
194 TGCCCTATTTTCCTTAAAATCAAAGTTCATCTCCCAAATAAGACAAGCATCGATTCTCGTAACAG
* * * * * *
3608711 TCTCCATTCCTTTGAAGACTGGGAACCCAAAACACATTCCTTTCTTTAGGATTCATGGCATTAAT
259 TCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGAT
* * * * * * *
3608776 GCTTTGGTGTCGCAAGAAAAACTTTCCTTTCCATCGTTTTTTATAGAATTAAAGTTTGTCTCTTA
324 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCCCTTA
* *
3608841 TATAAGGCAAACATTAATACTCATACAAATCCCCAATCTTTTCAGGATTAGGCACCATAAACATA
389 -ATAAGACAAACATTAATACTCATACTAATCCCCAATCTTTTCAGGATTAGGCACCATAAACATA
*
3608906 GTCTTCTTACT-GCGATACATCAT
453 GTCTTCTCACTAG-GATACATCAT
* * *
3608929 ATTGATGCTTTGGTTTTGCAAGAAAGGC-TTCTTTCACACTAATTTTTGTAAAGTCTAAGTCCGT
1 ATTGATGCTTTGGTTTTGCAAGAAAGGCTTTC-TTCCCACCAATTTTTGTAAAGTCTAAGTTCGT
* ** * * ** *
3608993 GCCTTAAATGAGACAGGCGAT-GATTCAAGTAATGATCTTCTTTCATTTTGTGATTAGGTGCAAT
65 GCCTCAAATGAGACAAAC-ATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
* **
3609057 AAACACATTCTCCTCATTAGGTTAAATGATATTGACAATTTTCTTTTGCATGAAAATCTTTTCTT
129 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTT
* * * * *
3609122 TGCCCTATTTTCCTTAAAATTAAAGTTAATCCCCCAAGTAAGACAAGCATCGATTCTCGCAACAG
194 TGCCCTATTTTCCTTAAAATCAAAGTTCATCTCCCAAATAAGACAAGCATCGATTCTCGTAACAG
* * * * *
3609187 TCTCTATTCCTTTCAAAACTGGGAAGCCAAAACATATTGCCTTCATTAGGATATATGGCATTGAT
259 TCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGAT
* * * * * *
3609252 GCTTTGGTGTCACAAGAAAAGTTTTTCTTTCCATCATTTTTTATAGAATCAAAGTTTGTCACATA
324 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCCCTTA
* * * *
3609317 TCTAAGACAAACATGAATACTCATACTAATCCCTAATCTTTTCAGGATAAGGCACCATAAACATA
389 -ATAAGACAAACATTAATACTCATACTAATCCCCAATCTTTTCAGGATTAGGCACCATAAACATA
* ** *
3609382 GTCTCCTCTTTAGGATACAACAT
453 GTCTTCTCACTAGGATACATCAT
* * *
3609405 ATTGATGTTTTGGTTTTGCAAGAAAGAG--ATCTTTCCACCAATTTTTGTAAAGTCTAAGTTCGT
1 ATTGATGCTTTGGTTTTGCAAGAAAG-GCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGT
* * * *
3609468 GCCTCAAATGAGACAAAAATGGATTCTAGTGATGATCTTTATTCATTTTATGATTAGGCACTATA
65 GCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATA
* *
3609533 AGCACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTAGCATGAAAATCTTTTCTT
130 AACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTT
3609597 ACTACGATGC
Statistics
Matches: 3423, Mismatches: 517, Indels: 105
0.85 0.13 0.03
Matches are distributed among these distances:
472 55 0.02
473 124 0.04
474 1065 0.31
475 972 0.28
476 932 0.27
477 273 0.08
478 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (475 bp):
ATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTG
CCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAA
ACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTG
CCCTATTTTCCTTAAAATCAAAGTTCATCTCCCAAATAAGACAAGCATCGATTCTCGTAACAGTC
TCCATTCCTTTCAAGACTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGC
TTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCCCTTAAT
AAGACAAACATTAATACTCATACTAATCCCCAATCTTTTCAGGATTAGGCACCATAAACATAGTC
TTCTCACTAGGATACATCAT
Found at i:3617479 original size:165 final size:165
Alignment explanation
Indices: 3617266--3617562 Score: 468
Period size: 165 Copynumber: 1.8 Consensus size: 165
3617256 TAAATTCATC
* * *
3617266 TCCTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGACTGGGAAGCCAAA
1 TCCTAAAAAAGACAAGCATCGATCCTCGTAACAGTCACCATTCTTTTCAAGACTGGGAAGCCAAA
* * * *
3617331 ACATATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC
66 ACACATTCCCTTCATTAGGATACATGCCATTGATGCCTTGGTGTCGCAACAAAAGCTTTTCTTTC
3617396 CATTCTTTTCTTTCTGATTAGGTACTATAAACATA
131 CATTCTTTTCTTTCTGATTAGGTACTATAAACATA
* * * *
3617431 TCCTAAAAAAGACAAGCATTGATCCTCGTAATAGTCACCATTCTTTTCAAGATTGGGTAGCCAAA
1 TCCTAAAAAAGACAAGCATCGATCCTCGTAACAGTCACCATTCTTTTCAAGACTGGGAAGCCAAA
* * *
3617496 ACACATTCCCTTCATTAGGATACGTGCCATTGATGCCTTGGTTTTGCAACAAAAGCTTTTCTTTC
66 ACACATTCCCTTCATTAGGATACATGCCATTGATGCCTTGGTGTCGCAACAAAAGCTTTTCTTTC
3617561 CA
131 CA
3617563 CCTTTTTTGA
Statistics
Matches: 118, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
165 118 1.00
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.33
Consensus pattern (165 bp):
TCCTAAAAAAGACAAGCATCGATCCTCGTAACAGTCACCATTCTTTTCAAGACTGGGAAGCCAAA
ACACATTCCCTTCATTAGGATACATGCCATTGATGCCTTGGTGTCGCAACAAAAGCTTTTCTTTC
CATTCTTTTCTTTCTGATTAGGTACTATAAACATA
Found at i:3619227 original size:157 final size:155
Alignment explanation
Indices: 3614622--3625889 Score: 1464
Period size: 159 Copynumber: 71.1 Consensus size: 155
3614612 TTTCAGGATA
* * * * ** * * *
3614622 AGGCACCATAAACATAGTCTTCTCTTTAGGATACACCATATTGAGGTTTTGGTTTCGCAAGGAAG
1 AGGCAACATAAACACATTCTT-TCATTAGGATACATGATATTGATGCTTT-GTTTCGCAAGAAAG
* * * * * *
3614687 GC-CTTCTTCCTAACAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTC
64 GCTTTTCTTTC-ACCAATTTTTGTAAAGTCAAAGTTTATGCCTCAAATAAGACAAACATGGATTC
* * **
3614751 TACTGATGATCTTCAAACTTTTTGTGATT
128 TAGTGATGATCTCCATTC-TTTTGTGATT
* * * * ** **
3614780 AGGC-ACTATAAACATATTCTCTTCATTAGGATAAATGATATTGATGATTTTCTTTTACGTGAAA
1 AGGCAAC-ATAAACACATTCT-TTCATTAGGATACATGATATTGATG-CTTTGTTTCGCAAGAAA
** * * * * *
3614844 ATCTTTTCTTTGC-CCTATTTTCCCT-TAAA-TCAAAGTTCATGTCTTAAATAAGATAAGTAC-T
63 GGCTTTTCTTT-CACCAATTTT---TGTAAAGTCAAAGTTTATGCCTCAAATAAGACAA--ACAT
* ** * **
3614905 -GATTCTCGT-AACAGTCTCTATTCTTTTCAAGATT
122 GGATTCTAGTGATGA-TCTCCATTCTTTT-GTGATT
* ** * * * * * *
3614939 -GGGAAGTTAAAATACATTCAATTT-ATTAGGATATACGACATTAATGCTTTGGTGTCGCAAGAA
1 AGGCAACAT-AAACACATTC--TTTCATTAGGATACATGATATTGATGCTTT-GTTTCGCAAGAA
* * * * * * *
3615002 AAGCTTCTCTTTCAACC-ATTTTTGATAGAA-TCAATGTTTGTCTCCT-AAGTAAGACAAACATT
62 AGGCTTTTCTTTC-ACCAATTTTTG-TA-AAGTCAAAGTTTAT-GCCTCAAATAAGACAAACATG
* *
3615064 AATAGTC-A-T-ACTAATC-CTCATTCTTTTCAG-GATT
123 GAT--TCTAGTGA-TGATCTC-CATTCTTTT--GTGATT
* * * ** * * * * *
3615098 AGGCAATATTAACATATTCTTGTCGCTAGGATAAACGATATTGATGATTCGGTTTCGCAAGGAAG
1 AGGCAACATAAACACATTCTT-TCATTAGGATACATGATATTGATGCTT-TGTTTCGCAAGAAAG
* * * * * * *
3615163 GC-CTTCTTCCTAACAATTTTTGTAAACTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTC
64 GCTTTTCTTTC-ACCAATTTTTGTAAAGTCAAAGTTTATGCCTCAAATAAGACAAACATGGATTC
* * **
3615227 TACTGATGATCTTCAAACTTTTTGTGATT
128 TAGTGATGATCTCCATTC-TTTTGTGATT
* * * * ** **
3615256 AGGC-ACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTACGTGAAA
1 AGGCAAC-ATAAACACATTCT-TTCATTAGGATACATGATATTGATG-CTTTGTTTCGCAAGAAA
** * * * * * * * **
3615320 ATCTTTTCTTTGC-CCTATTTTTCCTTAAA-TCAAAGTTCATGTCTTAAATAAGATAAGCACCGA
63 GGCTTTTCTTT-CACCAATTTTT--GTAAAGTCAAAGTTTATGCCTCAAATAAGACAAACATGGA
* * * * * **
3615383 TTCTCGTAACGGTCTCTATTCTTTTCAAGATT
125 TTCTAGTGATGATCTCCATTCTTTT-GTGATT
* ** * * * *
3615415 -GGGAAGTTAAAATACATTCAATTT-ATTAGGATATATGACATTGATGCTTTGGTGTCGCAAGAA
1 AGGCAACAT-AAACACATTC--TTTCATTAGGATACATGATATTGATGCTTT-GTTTCGCAAGAA
* * * * * * * **
3615478 AAGCTTCTCTTTCAACAATTTTTGATAGAA-TCAATGTTTGTCTCCT-AAGTAAGACAAACATTA
62 AGGCTTTTCTTTCACCAATTTTTG-TA-AAGTCAAAGTTTAT-GCCTCAAATAAGACAAACATGG
*
3615541 ATAGTC-A-T-ACTAATC-CTCATTCTTTTCAG-GATT
124 AT--TCTAGTGA-TGATCTC-CATTCTTTT--GTGATT
* * * ** * * * * *
3615574 AGGCAATATTAACATATTCTTGTCGCTAGGATAAACGATATTGATGATTCGGTTTCGCAAGGAAG
1 AGGCAACATAAACACATTCTT-TCATTAGGATACATGATATTGATGCTT-TGTTTCGCAAGAAAG
* * * * * * *
3615639 GC-CTTCTTCCTAACAATTTTTGTAAACTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTC
64 GCTTTTCTTTC-ACCAATTTTTGTAAAGTCAAAGTTTATGCCTCAAATAAGACAAACATGGATTC
* * **
3615703 TACTGATGATCTTCAAACTTTTTGTGATT
128 TAGTGATGATCTCCATTC-TTTTGTGATT
* * * * ** **
3615732 AGGC-ACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTACGTGAAA
1 AGGCAAC-ATAAACACATTCT-TTCATTAGGATACATGATATTGATG-CTTTGTTTCGCAAGAAA
** * * * * * * * **
3615796 ATCTTTTCTTTGC-CCTATTTTTCCTTAAA-TCAAAGTTCATGTCTTAAATAAGATAAGCACCGA
63 GGCTTTTCTTT-CACCAATTTTT--GTAAAGTCAAAGTTTATGCCTCAAATAAGACAAACATGGA
* ** * **
3615859 TTCTCGT-AACAGTCTCTATTCTTTTCAAGATT
125 TTCTAGTGATGA-TCTCCATTCTTTT-GTGATT
* ** * * * * *
3615891 -GGGAAGTTAAAATACATTCAATTT-ATTAGGATATACGACATTGATGCTTTGGTGTCGCAAGAA
1 AGGCAACAT-AAACACATTC--TTTCATTAGGATACATGATATTGATGCTTT-GTTTCGCAAGAA
* * * * * * *
3615954 AAGCTTCTCTTTCAACC-ATTTTTGATAGAA-TCAATGTTTGTCTCCT-AAGTAAGACAAACATT
62 AGGCTTTTCTTTC-ACCAATTTTTG-TA-AAGTCAAAGTTTAT-GCCTCAAATAAGACAAACATG
* * *
3616016 AATTGTCA-T-ACTAATC-CTCATTCTTTTCAG-GATT
123 GATTCT-AGTGA-TGATCTC-CATTCTTTT--GTGATT
* * * ** * * * * *
3616050 AGGCAATATTAACATATTCTTGTCGCTAGGATAAACGATATTGATGATTCGGTTTCGCAAGGAAG
1 AGGCAACATAAACACATTCTT-TCATTAGGATACATGATATTGATGCTT-TGTTTCGCAAGAAAG
* * * * * ** *
3616115 GC-CTTCTTCCTAACAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAACGAGACAAACATGGACTC
64 GCTTTTCTTTC-ACCAATTTTTGTAAAGTCAAAGTTTATGCCTCAAATAAGACAAACATGGATTC
** * * *
3616179 TAGAAATGATCTTCAGTCATTTTGGGATT
128 TAGTGATGATCTCCATTC-TTTTGTGATT
* ** * * * * * * **
3616208 AGGC-ACTATAAAACATATTCTCCACATTAGGGTAAATGATATTGAAGATTTTCTTTTGCTTGGA
1 AGGCAAC-AT-AAACACATTCT-TTCATTAGGATACATGATATTGATG-CTTTGTTTCGC-AAGA
* * * * * * * *
3616272 AA-TCTTTTCATT-ACCTTACTTTCCT-TAAAATCAAAGTTCAT-CTCTTAAATAAGACAACCAT
61 AAGGCTTTTCTTTCACC--AATTT-TTGTAAAGTCAAAGTTTATGC-CTCAAATAAGACAAACAT
* * ** *** *
3616333 CGATTCTTGT-AACAGTCTCCATTCCTTTCAAGACT
122 GGATTCTAGTGATGA-TCTCCATT-CTTTTGTGATT
* * * *
3616368 --GCGAAGCCA-CAACACATTCTCTTCACTAGGATACATGGTATTGATGCTTTGGTGTCGCAAGA
1 AGGC-AA--CATAAACACATTCT-TTCATTAGGATACATGATATTGATGCTTT-GTTTCGCAAGA
* * * * ** * * * *
3616430 AATGCTTTTCATTCCACCATTTTTTATGGAGTCAAGGTTTGT-CTCTTATATAAGACAAACA-GC
61 AAGGCTTTTC-TTTCACCAATTTTTGTAAAGTCAAAGTTTATGC-CTCAAATAAGACAAACATG-
* * * * * *
3616493 AATACTTA-TGCTAATCCCCAATCTTTTAAG-GATT
123 GATTC-TAGTGATGATCTCCATTCTTTT--GTGATT
* * * * * * * ** * *
3616527 AGGCACCATAAACATAGTCTTCTCACTAGCATACGTCATATTGACACTTTGGTTTTGCAAGAAAA
1 AGGCAACATAAACACATTCTT-TCATTAGGATACATGATATTGATGCTTT-GTTTCGCAAGAAAG
* * * ** * * *
3616592 GCTTTT-TTCCTACCAATTTTTGTAAGGTCTAAGTTCGTGCCTCAAATTAGACAAACATTGAATC
64 GCTTTTCTTTC-ACCAATTTTTGTAAAGTCAAAGTTTATGCCTCAAATAAGACAAACATGGATTC
* * * *
3616656 TAGTAATAATCTTCAATCATTTTGTGATT
128 TAGTGATGATCTCCATTC-TTTTGTGATT
* * * * * *
3616685 AGGC-ACTATAAACAGATTCTCCTCATTAGGATAAATGATATTGATGATTTACTTTTAG-AAGAA
1 AGGCAAC-ATAAACACATTCT-TTCATTAGGATACATGATATTGATGCTTT--GTTTCGCAAGAA
** ** * * * * *
3616748 AATCTTTTCTTTGC-CTTATTTTCCT-TAAAATCAAAATTCATCTCCT-AAATAAGGCAAGA-AT
62 AGGCTTTTCTTT-CACCAATTTT--TGTAAAGTCAAAGTTTAT-GCCTCAAATAAGACAA-ACAT
** * ** * ** *
3616809 CAATTCTCGT-AACAGTCTCCATTCCTTT-CAAGT
122 GGATTCTAGTGATGA-TCTCCATTCTTTTGTGATT
** * * * *
3616842 CTGCGAAGCCA-AAACACATTCCCTTCATTAGGATACATGGTATTGATGCTTTGGTGTCGCAGGA
1 AGGC-AA--CATAAACACATT-CTTTCATTAGGATACATGATATTGATGCTTT-GTTTCGCAAGA
* * * * * * * *
3616906 AAAGCTTTTTTTTCCATC-GTTTTTGATGGAA-TCAAAGTTTGT-CTCTTATATAAGACAAACA-
61 AAGGCTTTTCTTT-CACCAATTTTTG-T-AAAGTCAAAGTTTATGC-CTCAAATAAGACAAACAT
* * * * * **
3616967 GTAATACTCA-TGCTAATC-CGCAATCTTTTCAAGATT
122 G-GATTCT-AGTGATGATCTC-CATTCTTTT-GTGATT
* * * * * * * ** * *
3617003 AGGCACCATAAACATAGTCTTCTCACTAGCATACGTCATATTGACACTTTGGTTTTGCAAGAAAA
1 AGGCAACATAAACACATTCTT-TCATTAGGATACATGATATTGATGCTTT-GTTTCGCAAGAAAG
* * * * ** * * *
3617068 GCTTTT-TTCCTACCAATTTTTGTAAGGTCTATGTTCGTGCCTCAAATCAGACAAACATTGAATC
64 GCTTTTCTTTC-ACCAATTTTTGTAAAGTCAAAGTTTATGCCTCAAATAAGACAAACATGGATTC
* * * *
3617132 TAGTAATGATCTTCAATCATTTTGTAATT
128 TAGTGATGATCTCCATTC-TTTTGTGATT
* * * * * * *
3617161 AGGC-ACTATAAATAGATT-TTCCTCATTAGGATAAATGATATTGATGATTTACTTAT-GGATGA
1 AGGCAAC-ATAAACACATTCTT--TCATTAGGATACATGATATTGATGCTTT-GTT-TCGCAAGA
** ** * * * *
3617223 AAATCTTTTCTTTGC-CTTATTTTCCT-TAAAATCTAAA-TTCATCTCCT-AAATAAGACAAGCA
61 AAGGCTTTTCTTT-CACCAATTTT--TGTAAAGTC-AAAGTTTAT-GCCTCAAATAAGACAAACA
* * ** ** *
3617284 TCGATTCTCGT-AACAGTCTCCATTCTTTTCAAGACT
121 TGGATTCTAGTGATGA-TCTCCATTCTTTT-GTGATT
* * * ** *
3617320 -GGGAAGCCA-AAACATATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAA
1 AGGCAA--CATAAACACATT-CTTTCATTAGGATACATGATATTGATGCTTT-GTTTCGCAAGAA
* *** * * *** *
3617383 AAGCTTTTCTTTCCATTCTTTTCTTTCTGATTAGGTACTATAAACATAT-CCT-AAAAAAGACAA
62 AGGCTTTTCTTT-CA--CCAAT-TTT-TG-TAAAGT-C-A-AAGTTTATGCCTCAAATAAGACAA
* * * * * * **
3617446 GCATTGATCCTCGTAAT-AGTCACCATTCTTTTCAAGATT
118 ACATGGATTCTAGTGATGA-TCTCCATTCTTTT-GTGATT
* * * * * ** * * *
3617485 GGGTAGCCA-AAACACATTCCCTTCATTAGGATACGTGCCATTGATGCCTTGGTTTTGCAACAAA
1 AGGCA-ACATAAACACATT-CTTTCATTAGGATACATGATATTGATG-CTTTGTTTCGCAAGAAA
* * * * * * *
3617549 AGCTTTTCTTTCCACC-TTTTTTGATAGAA-TCAAAGTTTGT-CTCTTATATAAGACAAACGTGA
63 GGCTTTTCTTT-CACCAATTTTTG-TA-AAGTCAAAGTTTATGC-CTCAAATAAGACAAACATGG
** * * *
3617611 AAACTCA-T-ACTAATCCCCAATCTTTT-TAGGATT
124 ATTCT-AGTGA-TGATCTCCATTCTTTTGT--GATT
* * * * * * *
3617644 AGGCACCATAAACATAGTCTTCTTACTAGGATACATCATATTGATGCTTTGGTTTTGCAAGAAAG
1 AGGCAACATAAACACATTCTT-TCATTAGGATACATGATATTGATGCTTT-GTTTCGCAAGAAAG
* * * ** * ** *
3617709 GCTTTT-TTCCACCAATTTTTATAAAGTCTAAGTTCGTGCCTCAAATGAGACTGACATAGATTCT
64 GCTTTTCTTTCACCAATTTTTGTAAAGTCAAAGTTTATGCCTCAAATAAGACAAACATGGATTCT
* * *
3617773 AGTAATGATCTTCATTCATATTGTGATT
129 AGTGATGATCTCCATTC-TTTTGTGATT
* * * * *
3617801 AGGC-ACAATAAACACATTCTTCTCATTAGGATAAATGATATTAATGATTTTGTTTTTGCATGAA
1 AGGCAAC-ATAAACACATTCTT-TCATTAGGATACATGATATTGATG-CTTTG-TTTCGCAAGAA
*** * * * * * *
3617865 AATATTTTCTTTGC-CCTATTTTCCT-TAAAATCAAAGTTCAT-CCCCTAAATAAGACAAGCATT
62 AGGCTTTTCTTT-CACCAATTTT--TGTAAAGTCAAAGTTTATGCCTC-AAATAAGACAAACATG
* ** *** *
3617927 GATTCTCG-GAACAGTCTCCATTCCTTTCAAGACT
123 GATTCTAGTGATGA-TCTCCATT-CTTTTGTGATT
* * * * * *
3617961 -GGGATGCCA-AAACACATTCTCTTCATTAGGATACATCG-CATTGATGCTTTGCTGTCACAACA
1 AGGCA--ACATAAACACATTCT-TTCATTAGGATACAT-GATATTGATGCTTTG-TTTCGCAAGA
* * * * * *
3618023 AAAGCTTTTCTTTCCACC-ATTTTTGATAAAATCAAAGTTTGT-CTCTTATATAAGACGAACATG
61 AAGGCTTTTCTTT-CACCAATTTTTG-TAAAGTCAAAGTTTATGC-CTCAAATAAGACAAACATG
* * * *
3618086 AATAGTC-A-TAGA-AATCTCCATTCTTTTCTTGGTT
123 GAT--TCTAGT-GATGATCTCCATTCTTTT-GTGATT
* ** * ** * *
3618120 AGGCACCATAAACTTAGTCTTCTTTTTAGGATACATGATATTGATGCTTTGGTTTTGCAGGAAAG
1 AGGCAACATAAACACATTCTT-TCATTAGGATACATGATATTGATGCTTT-GTTTCGCAAGAAAG
** * ** *
3618185 G-TATTT-TCCCACCAATTTTTGTAAAGT-ATAAGTTTGTGCCTCAAATGTGACAAACTTGGATT
64 GCT-TTTCTTTCACCAATTTTTGTAAAGTCA-AAGTTTATGCCTCAAATAAGACAAACATGGATT
**
3618247 CTAGTGATGATCTTAATTCATTTTGTGATT
127 CTAGTGATGATCTCCATTC-TTTTGTGATT
** * * * * * * * *
3618277 AGGCTCCAGAAACACATT-TTCCTCAATAGGATAAATGATATTGACGATTTTCTTTCACATGTAA
1 AGGCAACATAAACACATTCTT--TCATTAGGATACATGATATTGATG-CTTTGTTTCGCAAG-AA
* * * * * ***
3618341 A-TCTTTCCTTTGC-CCTATTTTCCT-TAAAATCAAAGTTCT-T-CCCCTAAATAAGACCCGCAT
62 AGGCTTTTCTTT-CACCAATTTT--TGTAAAGTCAAAGTT-TATGCCTC-AAATAAGACAAACAT
* ** * * *
3618401 CGATTCTCA-T-AACATTCTCCATTCCTTTCGAGACT
122 GGATTCT-AGTGATGA-TCTCCATT-CTTTTGTGATT
* * ** * *
3618436 -GGGAAGCCA-AAACACATTTTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAAAA
1 AGGCAA--CATAAACACATTCT-TTCATTAGGATACATGATATTGATGCTTT-GTTTCGCAAGAA
* * ** * * *
3618499 AAGTTTTTCTTTC-CTCTGTTTTTGATAGAA-TCAAAGTTTGT-CTCTTATATAAGACAAACATG
62 AGGCTTTTCTTTCAC-CAATTTTTG-TA-AAGTCAAAGTTTATGC-CTCAAATAAGACAAACATG
* * ** ** *
3618561 AATACGCGT-ACAAATC-CCATTCTTTTTGTTGACT
123 GATTCTAGTGA-TGATCTCCATTC-TTTTG-TGATT
* * * * *
3618595 AGG-AACCATAAACATAGTCTTCTCATTAGCATACATTATATTGATGCTTTGGATTT-GCCAGAA
1 AGGCAA-CATAAACACATTCTT-TCATTAGGATACATGATATTGATGCTTT-G-TTTCGCAAGAA
* * * * * * *
3618658 ATGCTTTT-TTCCCACCAATTTTTGTAAGGTCTAAGTTTGTGGCTCAAATGAGACAAACATGGAT
62 AGGCTTTTCTT-TCACCAATTTTTGTAAAGTCAAAGTTTATGCCTCAAATAAGACAAACATGGAT
* * * ***
3618722 TTTAGCGATGAACTTGGTTCATTTTGTGATT
126 TCTAGTGATGATCTCCATTC-TTTTGTGATT
* * * * * * * * *
3618753 AGGC-ACTAGAAAGACATTCTCCTCAATAGGATAAATGATATTGATGATTTTTTTTTGCATGGAA
1 AGGCAAC-ATAAACACATTCT-TTCATTAGGATACATGATATTGATG-CTTTGTTTCGCA-AGAA
* * * * * * * * ** * *
3618817 A-TCTTATCTTTGC-CCTATTTTTCTTAAAATCAAAATTCATTCCTTGAATAAGACAGACATCGA
62 AGGCTTTTCTTT-CACCAATTTTT-GTAAAGTCAAAGTTTATGCCTCAAATAAGACAAACATGGA
* ** *** *
3618880 TTCTCGT-AACAGTCTCCATTCCTTTCAAGACT
125 TTCTAGTGATGA-TCTCCATT-CTTTTGTGATT
* * ** * * * *
3618912 -GGGAAGCCA-AAACACATTCTTTTTATTAGGATACATGGCATAGACGCTTTGGTGTCACAAGAA
1 AGGCAA--CATAAACACATTC-TTTCATTAGGATACATGATATTGATGCTTT-GTTTCGCAAGAA
* * * *
3618975 ACGCTTTTCTTTACACC-GTTTTTGATAGAA-TCAAAGTTTAT-CTCTTATATTAA-ACAAACAT
62 AGGCTTTTCTTT-CACCAATTTTTG-TA-AAGTCAAAGTTTATGC-CTCA-AATAAGACAAACAT
** ** * * *
3619036 TAATAT-TCA-T-ACAAATCCCCATTTTTTTGGGATT
122 GGAT-TCT-AGTGA-TGATCTCCATTCTTTTGTGATT
* *
3619070 AGGCAACATAAACATATTCTTGTCATTAGGATATATGATATTGATGCTTTGTTTCGCAAGAAAGG
1 AGGCAACATAAACACATTCTT-TCATTAGGATACATGATATTGATGCTTTGTTTCGCAAGAAAGG
* * *
3619135 C-TTTCTTCTAACCAATTTTTGTAAAGTCTAAGTTTATGCCTCAAATAAGACAAACAAGGATTCT
65 CTTTTCTT-TCACCAATTTTTGTAAAGTCAAAGTTTATGCCTCAAATAAGACAAACATGGATTCT
*
3619199 AGTGATGATCTTCATTCATTTTGTGATT
129 AGTGATGATCTCCATTC-TTTTGTGATT
* * * * *
3619227 AGGC-ACTATAAACACATTCCCTTCATTAGGATAAATGATATTGAAGACTTTTTTTTTGCATAGA
1 AGGCAAC-ATAAACACATT-CTTTCATTAGGATACATGATATTGATG-C-TTTGTTTCGCA-AGA
* * * * * ** *
3619291 AA-TCTTTTCTTTGCCCCATTTTCTTG-AAAGTCAAAGTTCATGCCTTAAATAAGACAGCCATCG
61 AAGGCTTTTCTTT-CACCAATTT-TTGTAAAGTCAAAGTTTATGCCTCAAATAAGACAAACATGG
* * * * ** **
3619354 ATTCTCGTAACGGTCTCCATTCTGTTTAAGGCT
124 ATTCTAGTGATGATCTCCATTCT-TTTGTGATT
* ** * * *
3619387 -GGGAAGCCGAAACACATTCTCTTCATTAGGATACATCG-CATTGATGCTTTGTTGTCACAACAA
1 AGGCAA-CATAAACACATTCT-TTCATTAGGATACAT-GATATTGATGCTTTGTT-TCGCAAGAA
* * * *
3619450 AAGCTTTTCTTTCCACC-ATTTTTGATAGAA-TCAAAGTTTGT-CTCTTATATAAGACAAACATG
62 AGGCTTTTCTTT-CACCAATTTTTG-TA-AAGTCAAAGTTTATGC-CTCAAATAAGACAAACATG
* * * *
3619512 AATAGTC-A-TAGA-AATCTCCATTCTTTTCTTGGTT
123 GAT--TCTAGT-GATGATCTCCATTCTTTT-GTGATT
* ** * ** * *
3619546 AGGCACCATAAACTTAGTCTTCTTTTTAGGATACATGATATTGATGTTTTGGTTTTGCAAGAAAG
1 AGGCAACATAAACACATTCTT-TCATTAGGATACATGATATTGATGCTTT-GTTTCGCAAGAAAG
** * ** *
3619611 G-TATTT-TCCCACCAATTTTTGTAAAGT-ATAAGTTTGTGCCTCAAATGTGACAAACTTGGATT
64 GCT-TTTCTTTCACCAATTTTTGTAAAGTCA-AAGTTTATGCCTCAAATAAGACAAACATGGATT
**
3619673 CTAGTGATGATCTTAATTCATTTTGTGATT
127 CTAGTGATGATCTCCATTC-TTTTGTGATT
* * * * ** * * *
3619703 AGGC-TCTAGAAACACATT-TTCCTCAATAGGATAAATGATATTGACTATTTTCTTTCACATGGA
1 AGGCAAC-ATAAACACATTCTT--TCATTAGGATACATGATATTGA-TGCTTTGTTTCGCA-AGA
* * * * * * * ***
3619766 AA-TCTTTCCTTTGC-CCTATTTTCCT-TAAAATCAAAGTTCAT-CCCCTAAACAAGACCCGCAT
61 AAGGCTTTTCTTT-CACCAATTTT--TGTAAAGTCAAAGTTTATGCCTC-AAATAAGACAAACAT
* * * ** ** *
3619827 CGATTCTTGTAAT-AGTCTCTGTTCCTTTCATGACT
122 GGATTCTAGTGATGA-TCTCCATT-CTTTTGTGATT
* * * * **
3619862 -GGGAAGCCA-AATCAAATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTT-GCAAGA
1 AGGCAA--CATAAACACATT-CTTTCATTAGGATACATGATATTGATGCTTT-GT-TTCGCAAGA
* * * * *
3619924 AAAGCTTTCCTTTCGATC-ATTTTTGATAGAA-TCAAAG-TT-TGCCTCTTATATACGACAAACA
61 AAGGCTTTTCTTTC-ACCAATTTTTG-TA-AAGTCAAAGTTTATGCCTC--AAATAAGACAAACA
** * ** * *
3619985 TTAATACTCA-T-ACAAATCCCCATTCTTTTCTTGATT
121 TGGATTCT-AGTGA-TGATCTCCATTCTTTT-GTGATT
* * ** * * * ***
3620021 AGGCACCATAAACATAGCCTTCTGATTAGGATAGACGATATTGACATTTTAGTTAT-GCAAGAAA
1 AGGCAACATAAACACATTCTT-TCATTAGGATACATGATATTGATGCTTT-GTT-TCGCAAGAAA
* * * * * **
3620085 GGCATTTTC--CCACCAATTTTTGTAAAGCCTAAGTTTGTGCCTCAAATGAGACAAACATATATT
63 GGC-TTTTCTTTCACCAATTTTTGTAAAGTCAAAGTTTATGCCTCAAATAAGACAAACATGGATT
* *
3620148 CTAGTGACGATCTTCATTCATTTTGTGATT
127 CTAGTGATGATCTCCATTC-TTTTGTGATT
* * * * * * ** *
3620178 AGGC-ACTATAAACACATTCTCCTCTTTAGGATAAATGGTATTGATGATTTTCTTTTACATGGAA
1 AGGCAAC-ATAAACACATTCT-TTCATTAGGATACATGATATTGATG-CTTTGTTTCGCA-AGAA
* * * * * **
3620242 A-TCCTTTCTTTGC-CCTATTTTCCT-TAAAATCAAAGTTCT-TCCCGT-AAATAAGACACGCAT
62 AGGCTTTTCTTT-CACCAATTTT--TGTAAAGTCAAAGTT-TATGCC-TCAAATAAGACAAACAT
* ** ***
3620302 CGATTCTCA-T-AACAGTCTCCATTCCTTTCAAGA-T
122 GGATTCT-AGTGATGA-TCTCCATT-CTTTTGTGATT
* * * ** * *
3620336 -GGGAAGCCA-AAACACAATCCCTTCATTAGGATACATGGCATTGATACTTTGGTATCGCAAGAA
1 AGGCAA--CATAAACAC-ATTCTTTCATTAGGATACATGATATTGATGCTTT-GTTTCGCAAGAA
* * * * * * *
3620399 AAGCTTTTCCTTCCACC-ATTTTTAATAGAA-TCAAGGTTTGT-CTCTTATATAAGACAAACAT-
62 AGGCTTTT-CTTTCACCAATTTTT-GTA-AAGTCAAAGTTTATGC-CTCAAATAAGACAAACATG
* * * * *
3620460 TACTACTCA-TGCA-AATCCCCATT-TTTTTTAGGATT
123 GA-TTCT-AGTG-ATGATCTCCATTCTTTTGT--GATT
* * * * * ** * *
3620495 AGGCACCATAGACATAATCTTCTCATTAGGATAAACCACATTGATGCTTTTGTTTTGCAAGAAAG
1 AGGCAACATAAACACATTCTT-TCATTAGGATACATGATATTGATGC-TTTGTTTCGCAAGAAAG
** * * ** * *
3620560 GCATTTT-TCCCACCAATTATTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATTGATTC
64 GC-TTTTCTTTCACCAATTTTTGTAAAGTCAAAGTTTATGCCTCAAATAAGACAAACATGGATTC
* * *
3620624 AAGTGTTGATCTTCATTCATTTTGTGATT
128 TAGTGATGATCTCCATTC-TTTTGTGATT
* * * * * *
3620653 AGGC-ACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGCATGAAA
1 AGGCAAC-ATAAACACATT-CTTTCATTAGGATACATGATATTGATG-CTTTGTTTCGCAAGAAA
* ** * * * * * *
3620717 -TCTTTTCTTTGC-CTTATTTTCCTG-AAAATCAAAGTTCATCCCTAAAATAAGACAAGCATCGA
63 GGCTTTTCTTT-CACCAATTTT--TGTAAAGTCAAAGTTTATGCCTCAAATAAGACAAACATGGA
** * ** * **** *
3620779 TTCTCTTAACAATCTCCATTCCGTCCAAGACT
125 TTCTAGTGATGATCTCCATT-CTTTTGTGATT
* ** * * * *
3620811 -GGGAAGCCGAAACACATTCTCTTCATTAGGATACATCG-CATTGATGCTTTGGTGTCACAACAA
1 AGGCAA-CATAAACACATTCT-TTCATTAGGATACAT-GATATTGATGCTTT-GTTTCGCAAGAA
* * * * *
3620874 AAGCTTTTCTTTCCACC-ATTTTTGATAGAA-TCAAAGTTTGT-CTCTTATATAAGAAAAACAT-
62 AGGCTTTTCTTT-CACCAATTTTTG-TA-AAGTCAAAGTTTATGC-CTCAAATAAGACAAACATG
* * * * * * *
3620935 TACTACTCAAG-CA-AATCCCCATTTTTTTGGGATT
123 GA-T--TCTAGTGATGATCTCCATTCTTTTGTGATT
* * ** * * * * *
3620969 AGGCACCATAAACATAGCCTTCTGATTAGGATAGACGATATTGACGTTTTAGTTAT-GCAAGAAA
1 AGGCAACATAAACACATTCTT-TCATTAGGATACATGATATTGATGCTTT-GTT-TCGCAAGAAA
* * ** ** * *
3621033 GG-TTTTTTTTCCACCAATTATTGTAAAGTCTTAGTTTGCGCCTCAAATGAGACAAACATTGATT
63 GGCTTTTCTTT-CACCAATTTTTGTAAAGTCAAAGTTTATGCCTCAAATAAGACAAACATGGATT
* * *
3621097 CTAGTGCTGATCTTCATTCATTCTGTGATT
127 CTAGTGATGATCTCCATTC-TTTTGTGATT
* * * * * *
3621127 AGGC-ACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGCATGGAA
1 AGGCAAC-ATAAACACATT-CTTTCATTAGGATACATGATATTGATG-CTTTGTTTCGCA-AGAA
* * * * * * * * **
3621191 A-ACTTTTCTTTGC-CCTATTTTCCT-TAAAATCAAAGTTCATCCCTTAAATAAGACAAGCGTTA
62 AGGCTTTTCTTT-CACCAATTTT--TGTAAAGTCAAAGTTTATGCCTCAAATAAGACAAACATGG
* ** * *** *
3621253 ATTCTCGT-AACAGTCTCCATTCCATTCAAGACT
124 ATTCTAGTGATGA-TCTCCATT-CTTTTGTGATT
* * * * * * *
3621286 -GGGAAGCCA-AAACACATTCTCTTCATTAAGATACATTG-CATTAATGCTTTGGTGTCACAACA
1 AGGCAA--CATAAACACATTCT-TTCATTAGGATACA-TGATATTGATGCTTT-GTTTCGCAAGA
* * * * *
3621348 AAAGCTTTTCTTTCCACC-ATTTTTGATAAAATCAAAGTTTGT-CTCTTATATAAGACAAACATG
61 AAGGCTTTTCTTT-CACCAATTTTTG-TAAAGTCAAAGTTTATGC-CTCAAATAAGACAAACATG
* * * *
3621411 AATAGTC-A-TAGA-AATCTCCA-TCTTTTCTTGGTT
123 GAT--TCTAGT-GATGATCTCCATTCTTTT-GTGATT
* * ** * * *
3621444 AGGCACCATAAAC-CTAGTCTTCTTTTTAGGATACATGATATTGATGTTTTGGTTTGGCAGGAAA
1 AGGCAACATAAACAC-ATTCTT-TCATTAGGATACATGATATTGATGCTTT-GTTTCGCAAGAAA
* * * * * *
3621508 GGAATTTTC--CCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATTGATT
63 GG-CTTTTCTTTCACCAATTTTTGTAAAGTCAAAGTTTATGCCTCAAATAAGACAAACATGGATT
*
3621571 CTAGTGATGATCTTCATTCATTTTGTGATT
127 CTAGTGATGATCTCCATTC-TTTTGTGATT
* * * * *
3621601 AGGC-ACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATG-TTT-TTTTGGATGGAAA
1 AGGCAAC-ATAAACACATT-CTTTCATTAGGATACATGATATTGATGCTTTGTTTCGCA-AGAAA
* *** * * * * * * * *
3621663 -TCTTTTCTTTGCTTTATTTTCTTG-AAAATCAAAGTTCATCCCTTAAATAAGTCAAGCATCGAT
63 GGCTTTTCTTT-CACCAATTT-TTGTAAAGTCAAAGTTTATGCCTCAAATAAGACAAACATGGAT
** * ** * ***
3621726 TCCCG-CAACAGTCTCCGTTCCTTTCAAGA-T
126 TCTAGTGATGA-TCTCCATT-CTTTTGTGATT
* * * ** * * *
3621756 -GGGAAGCCA-AAACGCATTCCCTTCATTAGGATACATGGCAATGATGCTTTGGTGCTGCAAGAA
1 AGGCAA--CATAAACACATT-CTTTCATTAGGATACATGATATTGATGCTTTGTTTC-GCAAGAA
* * * * *
3621819 AAGCATTTCTTTCCACC-ATTTTTGATAGAA-TCAAAGTTTGT-CTCTTATATAAGACAAACAT-
62 AGGCTTTTCTTT-CACCAATTTTTG-TA-AAGTCAAAGTTTATGC-CTCAAATAAGACAAACATG
* * * * * *
3621880 TACTACTCA-TGCA-AATCCCCATTGTTTT-TAGGGTT
123 GA-TTCT-AGTG-ATGATCTCCATTCTTTTGT--GATT
* * * * * **
3621915 AGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAAG
1 AGGCAACATAAACACATTCTT-TCATTAGGATACATGATATTGATGC-TTTGTTTCGCAAGAAAG
* * ** *** * *
3621980 GCTTTT-TTCCCACCAATTATTGTAAAGTCTTAGTTTGCACCTCAAATGAGAC--ACATTGATTC
64 GCTTTTCTT-TCACCAATTTTTGTAAAGTCAAAGTTTATGCCTCAAATAAGACAAACATGGATTC
* *
3622042 CAGTGATGATCTTCATTCATTTTGTGATT
128 TAGTGATGATCTCCATTC-TTTTGTGATT
* * * * *
3622071 AGGC-ACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTTTGCATAG
1 AGGCAAC-ATAAACACATT-CTTTCATTAGGATACATGATATTGATG---CTTTGTTTCGCA-AG
* * * * * * *
3622135 AAA-TCTTTT-TTTGC-CCTATTTTCT-TAAAAATCAAAGTTCATCCCTTAAATAAGACAAGCAT
60 AAAGGCTTTTCTTT-CACCAATTTT-TGT-AAAGTCAAAGTTTATGCCTCAAATAAGACAAACAT
* * ** *** *
3622196 CGATTCTCGT-AACAGTCTCCATTCCTTTCAAGACT
122 GGATTCTAGTGATGA-TCTCCATT-CTTTTGTGATT
* ** * *
3622231 -GGGAAGCCA-AAACACATTCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAAAA
1 AGGCAA--CATAAACACATTCT-TTCATTAGGATACATGATATTGATGCTTT-GTTTCGCAAGAA
* ** * ** * * *
3622294 AAGCTTTTCTTTC-CTCTGTTTTTGATAGAA-TCAAAGTTTGTTTCTTATATAAGACAAACATGA
62 AGGCTTTTCTTTCAC-CAATTTTTG-TA-AAGTCAAAGTTTATGCCTCAAATAAGACAAACATGG
* * ** * *
3622357 ATACGCA-T-ACAAATCCCCATTCTTTTCTTGATT
124 ATTC-TAGTGA-TGATCTCCATTCTTTT-GTGATT
* * * * *
3622390 AGGCACCATAAACATAGTCTTCTCATTAGGATACATTATATTGATGCTTTGGATTT-GCACGAAA
1 AGGCAACATAAACACATTCTT-TCATTAGGATACATGATATTGATGCTTT-G-TTTCGCAAGAAA
* * ** ** * *
3622454 TGCTTTT-TTCCTACCAATTTTTGTAAAGTCTTAGTTTGCGCCTCAAATGAGACAAACATTGATT
63 GGCTTTTCTTTC-ACCAATTTTTGTAAAGTCAAAGTTTATGCCTCAAATAAGACAAACATGGATT
*
3622518 CTAGTGATGATCTTCATTCATTTTGTGATT
127 CTAGTGATGATCTCCATTC-TTTTGTGATT
* * * * *
3622548 AGGC-ACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATG-TTT-TTTTGGATGGAAA
1 AGGCAAC-ATAAACACATT-CTTTCATTAGGATACATGATATTGATGCTTTGTTTCGCA-AGAAA
* *** * * * * * * * *
3622610 -TCTTTTCTTTGCTTTATTTTCTTG-AAAATCAAAGTTCATCCCTTAAATAAGTCAAGCATCGAT
63 GGCTTTTCTTT-CACCAATTT-TTGTAAAGTCAAAGTTTATGCCTCAAATAAGACAAACATGGAT
** * ** * ***
3622673 TCCCG-CAACAGTCTCCGTTCCTTTCAAGA-T
126 TCTAGTGATGA-TCTCCATT-CTTTTGTGATT
* * ** * * *
3622703 -GGGAAGCCA-AAACACATTCCCTTCATTAGGATACATGGCAATGATGCTTTGGTGCTGCAAGAA
1 AGGCAA--CATAAACACATT-CTTTCATTAGGATACATGATATTGATGCTTTGTTTC-GCAAGAA
* * * * *
3622766 AAGCATTTCTTTCCACC-ATTTTTGATAGAA-TCAAAGTTTGT-CTCTTATATAAGACAAACAT-
62 AGGCTTTTCTTT-CACCAATTTTTG-TA-AAGTCAAAGTTTATGC-CTCAAATAAGACAAACATG
* * * * * *
3622827 TACTACTCA-TGCA-AATCCCCATTGTTTT-TAGGGTT
123 GA-TTCT-AGTG-ATGATCTCCATTCTTTTGT--GATT
* * * * * **
3622862 AGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAAG
1 AGGCAACATAAACACATTCTT-TCATTAGGATACATGATATTGATGC-TTTGTTTCGCAAGAAAG
* * ** ** ** * *
3622927 GCTTTT-TTCCCACCAATTATTGTAAAGTCTTAGTTTACACCTCATTTGAGAC--ACATTGATTC
64 GCTTTTCTT-TCACCAATTTTTGTAAAGTCAAAGTTTATGCCTCAAATAAGACAAACATGGATTC
* *
3622989 CAGTGATGATCTTCATTCATTTTGTGATT
128 TAGTGATGATCTCCATTC-TTTTGTGATT
* * * * *
3623018 AGGC-ACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTTTTGCATA
1 AGGCAAC-ATAAACACATT-CTTTCATTAGGATACATGATATTGATG----CTTTGTTTCGCA-A
* * * * * * *
3623082 GAAA-TCTTTT-TTTGC-CCTATTTTCT-TAAAAATCAAAGTTCATCCCTTAAATAAGACAAGCA
59 GAAAGGCTTTTCTTT-CACCAATTTT-TGT-AAAGTCAAAGTTTATGCCTCAAATAAGACAAACA
* * ** *** *
3623143 TCGATTCTCGT-AACAGTCTCCATTCCTTTCAAGACT
121 TGGATTCTAGTGATGA-TCTCCATT-CTTTTGTGATT
* ** * * *
3623179 -GGGAAGCCA-AAACACATTCTCTTCATTAGGATACATGGCATTAATGCTTTGGTGTCGCAAAAA
1 AGGCAA--CATAAACACATTCT-TTCATTAGGATACATGATATTGATGCTTT-GTTTCGCAAGAA
* ** * ** * * *
3623242 AAGCTTTTCTTTC-CTCTGTTTTTGATAGAA-TCAAAGTTTGTTTCTTATATAAGACAAACATGA
62 AGGCTTTTCTTTCAC-CAATTTTTG-TA-AAGTCAAAGTTTATGCCTCAAATAAGACAAACATGG
* * ** * *
3623305 ATACGCA-T-ACAAATCCCCATTCTTTTCTTGATT
124 ATTC-TAGTGA-TGATCTCCATTCTTTT-GTGATT
* * * * *
3623338 AGGCACCATAAACATAGTCTTCTCATTAGGATACATTATATTGATGCTTTGGATTT-GCACGAAA
1 AGGCAACATAAACACATTCTT-TCATTAGGATACATGATATTGATGCTTT-G-TTTCGCAAGAAA
* * ** ** * *
3623402 TGCTTTT-TTCCTACCAATTTTTGTAAAGTCTTAGTTTGCGCCTCAAATGAGACAAACATTGATT
63 GGCTTTTCTTTC-ACCAATTTTTGTAAAGTCAAAGTTTATGCCTCAAATAAGACAAACATGGATT
*
3623466 CTAGTGATGATCTTCATTCATTTTGTGATT
127 CTAGTGATGATCTCCATTC-TTTTGTGATT
* * * * *
3623496 AGGC-ACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAGTTTTTTTTG-AATGGA
1 AGGCAAC-ATAAACACATT-CTTTCATTAGGATACATGATATTGATG-CTTTGTTTCGCAA--GA
* ** * * * * * * *
3623559 AA-TCTTTTCTTTGC-CTTATTTTCT-TGAAAATCAAAGTTCATCCCTTAAATAAGACAAGCTTC
61 AAGGCTTTTCTTT-CACCAATTTT-TGT-AAAGTCAAAGTTTATGCCTCAAATAAGACAAACATG
* * ** ***
3623621 GATTCTCG-CAACAGTCTCCATTCCTTTCAAGA-T
123 GATTCTAGTGATGA-TCTCCATT-CTTTTGTGATT
* * ** * *
3623654 -GGGAAGCCA-AAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCGAGAA
1 AGGCAA--CATAAACACATT-CTTTCATTAGGATACATGATATTGATGCTTT-GTTTCGCAAGAA
* * * * *
3623717 AAGCTTTTCTTTTCACC-ATTTTTGATAGAA-TCAAACTTTGT-CTCTTATATAAGACAAACAT-
62 AGGCTTTTC-TTTCACCAATTTTTG-TA-AAGTCAAAGTTTATGC-CTCAAATAAGACAAACATG
* * * * *
3623778 TACTACTCA-TGCA-AATCCCCATT-TTTTTTAGGATT
123 GA-TTCT-AGTG-ATGATCTCCATTCTTTTGT--GATT
* * * * * * ** * *
3623813 AGACACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTGGTTTCGCGAGAAAT
1 AGGCAACATAAACACATTCTT-TCATTAGGATACATGATATTGATGCTTT-GTTTCGCAAGAAAG
* * * ** * * *
3623878 GCTTTT-TTTCGGCCAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAAAATTGATTC
64 GCTTTTCTTTC-ACCAATTTTTGTAAAGTCAAAGTTTATGCCTCAAATAAGACAAACATGGATTC
* *
3623942 TAGCGATGATCTTCATTCATTTTGTGATT
128 TAGTGATGATCTCCATTC-TTTTGTGATT
** * * * * *
3623971 AGGC-ACTATAAACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTTTTTTTGCATGGA
1 AGGCAAC-ATAAACACATT-CTTTCATTAGGATACATGATATTGATG--CTTTGTTTCGCA-AGA
* * * * * * * *
3624035 AA-TCTTTTCTTTGC-CCTATTTTCCT-TAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATC
61 AAGGCTTTTCTTT-CACCAATTTT--TGTAAAGTCAAAGTTTATGCCTCAAATAAGACAAACATG
* ** ***
3624097 GATTCTCGT-AACAGTCTCCATTCCTTTCAAGATT
123 GATTCTAGTGATGA-TCTCCATT-CTTTTGTGATT
* ** * * ** * *
3624131 -GGGAAGCCGAAACACATTCTCTTCTTTAGGATACATCG-CATTGATGCTTTGGCGTCACAACAA
1 AGGCAA-CATAAACACATTCT-TTCATTAGGATACAT-GATATTGATGCTTT-GTTTCGCAAGAA
* * * * *
3624194 AAGCTTTTCTTTCTACC-ATTTTCGATAGAA-TCAAAGTTTGT-CTCTTATATAAGACAAACATG
62 AGGCTTTTCTTTC-ACCAATTTTTG-TA-AAGTCAAAGTTTATGC-CTCAAATAAGACAAACATG
* * * * *
3624256 AATACTCA-TAGA-AATCTCCATTCTTTTCTTGGTT
123 GATTCT-AGT-GATGATCTCCATTCTTTT-GTGATT
* * * * ** * *
3624290 AGGCACCATAAATATAGTCTTCTTTTTAGGATACATGATATTGATGTTTTGGTTTTGCAAGAAAG
1 AGGCAACATAAACACATTCTT-TCATTAGGATACATGATATTGATGCTTT-GTTTCGCAAGAAAG
** * * ** * *
3624355 G-TATTT-TCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGTGGCAAACTTGGATTC
64 GCT-TTTCTTTCACCAATTTTTGTAAAGTCAAAGTTTATGCCTCAAATAAGACAAACATGGATTC
* *
3624418 TAGAGATGATCTTCATTCATTTTGTGATT
128 TAGTGATGATCTCCATTC-TTTTGTGATT
* * * * * *
3624447 AGGC-ACTATAAACACATTCCCTTCATTAGGATAAATGGTATTGATGATTT-TTTTGACATGGAA
1 AGGCAAC-ATAAACACATT-CTTTCATTAGGATACATGATATTGATGCTTTGTTTCG-CA-AGAA
* * * * * *
3624510 A-TCCTTTCTTTGC-CCTATTTTCCT-TAAAATCAAAGTTCT-TCCCGT-AAATAAGACACACAT
62 AGGCTTTTCTTT-CACCAATTTT--TGTAAAGTCAAAGTT-TATGCC-TCAAATAAGACAAACAT
* * ***
3624570 CGATTCTCA-TAAT-AGTCTCCATTCCTTTCAAGA-T
122 GGATTCT-AGTGATGA-TCTCCATT-CTTTTGTGATT
* * ** * *
3624604 -GGGAAGCCA-AAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAA
1 AGGCAA--CATAAACACATT-CTTTCATTAGGATACATGATATTGATGCTTT-GTTTCGCAAGAA
* * * *
3624667 AAGCTTTTCTTTCCACC-ATTTTTGATAGAA-TCAAAGTTTGT-CTCTTATATAAGACACAAACA
62 AGGCTTTTCTTT-CACCAATTTTTG-TA-AAGTCAAAGTTTATGC-CTCAAATAAG--ACAAACA
* * * * *
3624729 T---TACTACTCATGCAATTCCCCATT-TTTTTTAGGATT
121 TGGATTCTAGTGATG--A-TCTCCATTCTTTTGT--GATT
* * ** * * ** * *
3624765 AGGCACCATAAACATAGCCTTCTGATTAGGATAGACAATATTGACGTTTTAGTTAT-GCAAGAAA
1 AGGCAACATAAACACATTCTT-TCATTAGGATACATGATATTGATGCTTT-GTT-TCGCAAGAAA
* * * * **
3624829 GGCATTTTC--CCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATATATT
63 GGC-TTTTCTTTCACCAATTTTTGTAAAGTCAAAGTTTATGCCTCAAATAAGACAAACATGGATT
* *
3624892 CTAGTGATGATCTTCATTCATTTGTGATT
127 CTAGTGATGATCTCCATTCTTTTGTGATT
* * * * * *
3624921 AGGC-ACTATAAACACATTCCCTTCATTAGGATAAATGATGTTGAAGACTTTTTTTTTGCATAGA
1 AGGCAAC-ATAAACACATT-CTTTCATTAGGATACATGATATTGATG-C-TTTGTTTCGCA-AGA
* * * * * * ** *
3624985 AA-TCTTTTCTTTGCCCCATTTTCTTG-AAAATCAAAGTTCATGCCTTAAATAAGACAGGCATAG
61 AAGGCTTTTCTTT-CACCAATTT-TTGTAAAGTCAAAGTTTATGCCTCAAATAAGACAAACATGG
* * * * * *** **
3625048 ATTCTCGTAACGGTCTCCATTTCGTTCAAGGCT
124 ATTCTAGTGATGATCTCCA-TTCTTTTGTGATT
* * ** * * * * *
3625081 -GGGATGCCGAAACACATTCACTTCATTAGGATACATCG-CATTGATGCTTTGGTGTCACAACAA
1 AGGCA-ACATAAACACATTC-TTTCATTAGGATACAT-GATATTGATGCTTT-GTTTCGCAAGAA
* * * * * * * *
3625144 AAGCTTTTCTTTC-CGCCATTTTTGATAGAA-TCAAAGTTTGT-CTCTTACACAAGATAAACACG
62 AGGCTTTTCTTTCAC-CAATTTTTG-TA-AAGTCAAAGTTTATGC-CTCAAATAAGACAAACATG
* * * * *
3625206 AATACTCA-TAGA-AATCTCCATTCTTTTCTTGGTT
123 GATTCT-AGT-GATGATCTCCATTCTTTT-GTGATT
* * ** * *
3625240 AGGCACCATAAAC-CTAGTCTTCTTTTTAGGATACATGATATTGATGTTTTGGTTTTGCAAGAAA
1 AGGCAACATAAACAC-ATTCTT-TCATTAGGATACATGATATTGATGCTTT-GTTTCGCAAGAAA
** * * ** * *
3625304 GG-TATTT-TCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGTGGCAAACTTGGATT
63 GGCT-TTTCTTTCACCAATTTTTGTAAAGTCAAAGTTTATGCCTCAAATAAGACAAACATGGATT
* * *
3625367 CTAGAGATGATCTTCATTCATTTTATGATT
127 CTAGTGATGATCTCCATTC-TTTTGTGATT
* * * * * * *
3625397 AGGC-ACTGTAAACACATTCCCTTCATTAGGATAAATGGTATTGATGATTT-TCTTTGACAGGGA
1 AGGCAAC-ATAAACACATT-CTTTCATTAGGATACATGATATTGATGCTTTGT-TTCG-CA-AGA
* * * * * *
3625460 AA-TCCTTTCTTTGC-CCTATTTTCCT-TAAAATCAAAGTTCT-TCCCGT-AAATAAGACACACA
61 AAGGCTTTTCTTT-CACCAATTTT--TGTAAAGTCAAAGTT-TATGCC-TCAAATAAGACAAACA
* ** ***
3625520 TCGATTCTCA-T-AACAGTCTCCATTCCTTTCAAGA-T
121 TGGATTCT-AGTGATGA-TCTCCATT-CTTTTGTGATT
* * ** * *
3625555 -GGGAAGCCA-AAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAA
1 AGGCAA--CATAAACACATT-CTTTCATTAGGATACATGATATTGATGCTTT-GTTTCGCAAGAA
* * *
3625618 AAGCTTTTCTTTCCATC-ATTTTTGATAGAA-TCAAAG-TT-TGCCTCTTATATAAGACAAACAT
62 AGGCTTTTCTTT-CACCAATTTTTG-TA-AAGTCAAAGTTTATGCCTC--AAATAAGACAAACAT
* * * * * *
3625679 TGCTACTCA-TGCA-AATCCCCATT-TTTTTTAGGATT
122 GGATTCT-AGTG-ATGATCTCCATTCTTTTGT--GATT
* * * * * ** * *
3625714 AGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTCCGCAAGAAAT
1 AGGCAACATAAACACATTCTT-TCATTAGGATACATGATATTGATGC-TTTGTTTCGCAAGAAAG
* * * * ** * *
3625779 G-TTTT-TTTCCCACAAATTATTGTAATGTCTAAGTTTGCGCCTCAAATGAGACAAACATTGATT
64 GCTTTTCTTT--CACCAATTTTTGTAAAGTCAAAGTTTATGCCTCAAATAAGACAAACATGGATT
** *
3625842 CTAGTGATGATCTTTACTCATTTTGTGATT
127 CTAGTGATGATCTCCATTC-TTTTGTGATT
* *
3625872 AGGCACCACAAACACATT
1 AGGCAACATAAACACATT
3625890 TTGATGAAAA
Statistics
Matches: 7858, Mismatches: 2335, Indels: 1834
0.65 0.19 0.15
Matches are distributed among these distances:
153 5 0.00
154 14 0.00
155 118 0.02
156 426 0.05
157 974 0.12
158 2275 0.29
159 3015 0.38
160 725 0.09
161 157 0.02
162 22 0.00
163 5 0.00
164 3 0.00
165 108 0.01
166 9 0.00
167 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (155 bp):
AGGCAACATAAACACATTCTTTCATTAGGATACATGATATTGATGCTTTGTTTCGCAAGAAAGGC
TTTTCTTTCACCAATTTTTGTAAAGTCAAAGTTTATGCCTCAAATAAGACAAACATGGATTCTAG
TGATGATCTCCATTCTTTTGTGATT
Found at i:3619496 original size:475 final size:473
Alignment explanation
Indices: 3617434--3625889 Score: 11206
Period size: 475 Copynumber: 17.8 Consensus size: 473
3617424 AAACATATCC
* * * * * * * *
3617434 TAAAAAAGACAAGCATTGATCCTCGTAATAGTCACCATTCTTTTCAAGATTGGGTAGCCAAAACA
1 TAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACA
* * * * * * *
3617499 CATTCCCTTCATTAGGATACGTGCCATTGATGCCTTGGTTTTGCAACAAAAGCTTTTCTTTCCAC
66 CATTCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAC
* * * *
3617564 CTTTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACGTGAAAACTCATACTAATCCCC
131 CATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATACTCATACAAATCCCC
* * * *
3617629 AATCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTTACTAGGATACATCATATTGATGCTTT
196 ATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTT
* * *
3617694 GGTTTTGCAAGAAAGGCTTTTTTCCACCAATTTTTATAAAGTCTAAGTTCGTGCCTCAAATGAGA
261 GG-TTTGCAAGAAAGGCTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGA
** * * * * *
3617759 CTGACATAGATTCTAGTAATGATCTTCATTCATATTGTGATTAGGCACAATAAACACATT-CTTC
325 CAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCT-
* * *
3617823 TCATTAGGATAAATGATATTAATGATTTTGTTTTTGCATGAAAATATTTTCTTTGCCCTATTTTC
389 TCATTAGGATAAATGATATTGATGATTTT-TTTTTGCATGGAAATCTTTTCTTTGCCCTATTTT-
*
3617888 CTTAAAATCAAAGTTCATCCCC
452 CTTAAAATCAAAGTTCATCCCT
* * *
3617910 TAAATAAGACAAGCATTGATTCTCGGAACAGTCTCCATTCCTTTCAAGACTGGGATGCCAAAACA
1 TAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACA
* * * *
3617975 CATTCTCTTCATTAGGATACATCGCATTGATGCTTTGCTGTCACAACAAAAGCTTTTCTTTCCAC
66 CATTCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAC
* * * * *
3618040 CATTTTTGATAAAATCAAAGTTTGTCTCTTATATAAGACGAACATGAATAGTCATAGAAATCTCC
131 CATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATACTCATACAAATCCCC
* * **
3618105 ATTCTTTTCTTGG-TTAGGCACCATAAACTTAGTCTTCTTTTTAGGATACATGATATTGATGCTT
196 ATTCTTTT-TAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTT
* * *
3618169 TGGTTTTGCAGGAAAGG-TATTTTCCCACCAATTTTTGTAAAGTATAAGTTTGTGCCTCAAATGT
260 TGG-TTTGCAAGAAAGGCT-TTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGA
* * * * *
3618233 GACAAAC-TTGGATTCTAGTGATGATCTTAATTCATTTTGTGATTAGGCTCCAGAAACACATTTT
323 GACAAACATT-GATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACA-TTC
* * * ** * *
3618297 CC-TCAATAGGATAAATGATATTGACGATTTTCTTTCACATGTAAATCTTTCCTTTGCCCTATTT
386 CCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTT
* *
3618361 TCCTTAAAATCAAAGTTCTTCCCC
451 T-CTTAAAATCAAAGTTCATCCCT
** * * *
3618385 TAAATAAGACCCGCATCGATTCTCATAACATTCTCCATTCCTTTCGAGACTGGGAAGCCAAAACA
1 TAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACA
* * * *
3618450 CATTTTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAAAAAAGTTTTTCTTTCCTC
66 CATTCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAC
** * *
3618515 TGTTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATACGCGTACAAAT-CCC
131 CATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATACTCATACAAATCCCC
* * * *
3618579 ATTCTTTTT-GTTGACTAGGAACCATAAACATAGTCTTCTCATTAGCATACATTATATTGATGCT
196 ATTCTTTTTAG--GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCT
* * * *
3618643 TTGGATTTGCCAGAAATGCTTTTTTCCCACCAATTTTTGTAAGGTCTAAGTTTGTGGCTCAAATG
259 TTGG-TTTGCAAGAAAGGC-TTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATG
* * * * ** * *
3618708 AGACAAACATGGATTTTAGCGATGAACTTGGTTCATTTTGTGATTAGGCACTAGAAAGACATTCT
322 AGACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC-
* *
3618773 CC-TCAATAGGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTATCTTTGCCCTATTT
386 CCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTA-TT
* *
3618837 TTCTTAAAATCAAAATTCATTCCT
450 TTCTTAAAATCAAAGTTCATCCCT
*
3618861 TGAATAAGAC-AGACATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAAC
1 TAAATAAGACAAG-CATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAAC
* * * * * * *
3618925 ACATTCTTTTTATTAGGATACATGGCATAGACGCTTTGGTGTCACAAGAAACGCTTTTCTTTACA
65 ACATTCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA
* * * *
3618990 CCGTTTTTGATAGAATCAAAGTTTATCTCTTATATTAA-ACAAACATTAATATTCATACAAATCC
130 CCATTTTTGATAGAATCAAAGTTTGTCTCTTATA-TAAGACAAACATGAATACTCATACAAATCC
* * * * *
3619054 CCATT-TTTTTGGGATTAGGCAACATAAACATATTCTTGTCATTAGGATATATGATATTGATGCT
194 CCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCT
** * *
3619118 TT-GTTTCGCAAGAAAGGCTTTCTTCTAACCAATTTTTGTAAAGTCTAAGTTTATGCCTCAAATA
259 TTGGTTT-GCAAGAAAGGCTTT-TTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATG
**
3619182 AGACAAACAAGGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCC
322 AGACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCC
* * *
3619247 CTTCATTAGGATAAATGATATTGAAGACTTTTTTTTTGCATAGAAATCTTTTCTTTGCCCCATTT
387 CTTCATTAGGATAAATGATATTGATGA-TTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTT
* *
3619312 TCTTGAAAGTCAAAGTTCATGCCT
451 TCTT-AAAATCAAAGTTCATCCCT
* * * *
3619336 TAAATAAGAC-AGCCATCGATTCTCGTAACGGTCTCCATT-CTGTTTAAGGCTGGGAAGCCGAAA
1 TAAATAAGACAAG-CATCGATTCTCGTAACAGTCTCCATTCCT-TTCAAGACTGGGAAGCCAAAA
* * * *
3619399 CACATTCTCTTCATTAGGATACATCGCATTGATGCTTTGTTGTCACAACAAAAGCTTTTCTTTCC
64 CACATTCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC
* * *
3619464 ACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATAGTCATAGAAATCT
129 ACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATACTCATACAAATCC
* * ** *
3619529 CCATTCTTTTCTTGG-TTAGGCACCATAAACTTAGTCTTCTTTTTAGGATACATGATATTGATGT
194 CCATTCTTTT-TAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGC
*
3619593 TTTGGTTTTGCAAGAAAGG-TATTTTCCCACCAATTTTTGTAAAGTATAAGTTTGTGCCTCAAAT
258 TTTGG-TTTGCAAGAAAGGCT-TTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAAT
* * * *
3619657 GTGACAAAC-TTGGATTCTAGTGATGATCTTAATTCATTTTGTGATTAGGCTCTAGAAACACATT
321 GAGACAAACATT-GATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACA-T
* * * ** *
3619721 TTCC-TCAATAGGATAAATGATATTGACT-ATTTTCTTTCACATGGAAATCTTTCCTTTGCCCTA
384 TCCCTTCATTAGGATAAATGATATTGA-TGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTA
*
3619784 TTTTCCTTAAAATCAAAGTTCATCCCC
448 TTTT-CTTAAAATCAAAGTTCATCCCT
* ** * * ** * *
3619811 TAAACAAGACCCGCATCGATTCTTGTAATAGTCTCTGTTCCTTTCATGACTGGGAAGCCAAATCA
1 TAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACA
* * * * * *
3619876 AATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTTGCAAGAAAAGCTTTCCTTTCGAT
66 CATTCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAC
* * *
3619941 CATTTTTGATAGAATCAAAGTTTGCCTCTTATATACGACAAACATTAATACTCATACAAATCCCC
131 CATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATACTCATACAAATCCCC
* * * * * ***
3620006 ATTCTTTTCT-TGATTAGGCACCATAAACATAGCCTTCTGATTAGGATAGACGATATTGACATTT
196 ATTCTTTT-TAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTT
* * *
3620070 TAGTTATGCAAGAAAGGCATTTTCCCACCAATTTTTGTAAAGCCTAAGTTTGTGCCTCAAATGAG
260 TGGTT-TGCAAGAAAGGCTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAG
*
3620135 ACAAACATAT-ATTCTAGTGACGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTC
324 ACAAACAT-TGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC-C
* * * * *
3620199 C-TCTTTAGGATAAATGGTATTGATGATTTTCTTTTACATGGAAATCCTTTCTTTGCCCTATTTT
387 CTTCATTAGGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTT
* *
3620263 CCTTAAAATCAAAGTTCTTCCCG
452 -CTTAAAATCAAAGTTCATCCCT
* *
3620286 TAAATAAGACACGCATCGATTCTCATAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACA
1 TAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACA
* * * * *
3620350 CAATCCCTTCATTAGGATACATGGCATTGATACTTTGGTATCGCAAGAAAAGCTTTTCCTTCCAC
66 CATTCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAC
* * * * *
3620415 CATTTTTAATAGAATCAAGGTTTGTCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCC
131 CATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATACTCATACAAATCCCC
* * * * ** *
3620480 ATTTTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCACATTGATGCTTT
196 ATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGC-TT
* * *
3620545 TGTTTTGCAAGAAAGGCATTTTTCCCACCAATTATTGTAAAGTCTAAGTTCGTGCCTCAAATGAG
260 TGGTTTGCAAGAAAGGC-TTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAG
* *
3620610 ACAAACATTGATTCAAGTGTTGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCT
324 ACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCT
*
3620675 TCATTAGGATAAATGATATTGATGATTTTTTTTTGCAT-GAAATCTTTTCTTTGCCTTATTTTCC
389 TCATTAGGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTT-C
*
3620739 TGAAAATCAAAGTTCATCCCT
453 TTAAAATCAAAGTTCATCCCT
* * * * * *
3620760 AAAATAAGACAAGCATCGATTCTCTTAACAATCTCCATTCCGTCCAAGACTGGGAAGCCGAAACA
1 TAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACA
* * *
3620825 CATTCTCTTCATTAGGATACATCGCATTGATGCTTTGGTGTCACAACAAAAGCTTTTCTTTCCAC
66 CATTCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAC
* * *
3620890 CATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGAAAAACATTACTACTCA-AGCAAATCCC
131 CATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATACTCATA-CAAATCCC
* * * * * * *
3620954 CATT-TTTTTGGGATTAGGCACCATAAACATAGCCTTCTGATTAGGATAGACGATATTGACGTTT
195 CATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTT
* * * * * *
3621018 TAGTTATGCAAGAAAGGTTTTTTTTCCACCAATTATTGTAAAGTCTTAGTTTGCGCCTCAAATGA
260 TGGTT-TGCAAGAAAGG-CTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGA
* *
3621083 GACAAACATTGATTCTAGTGCTGATCTTCATTCATTCTGTGATTAGGCACTATAAACACATTCCC
323 GACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCC
*
3621148 TTCATTAGGATAAATGATATTGATGATTTTTTTTTGCATGGAAAACTTTTCTTTGCCCTATTTTC
388 TTCATTAGGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTT-
3621213 CTTAAAATCAAAGTTCATCCCT
452 CTTAAAATCAAAGTTCATCCCT
* ** *
3621235 TAAATAAGACAAGCGTTAATTCTCGTAACAGTCTCCATTCCATTCAAGACTGGGAAGCCAAAACA
1 TAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACA
* * * * *
3621300 CATTCTCTTCATTAAGATACATTGCATTAATGCTTTGGTGTCACAACAAAAGCTTTTCTTTCCAC
66 CATTCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAC
* * * *
3621365 CATTTTTGATAAAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATAGTCATAGAAATCTCC
131 CATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATACTCATACAAATCCCC
* * ** *
3621430 A-TCTTTTCTTGG-TTAGGCACCATAAACCTAGTCTTCTTTTTAGGATACATGATATTGATGTTT
196 ATTCTTTT-TAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTT
* **
3621493 TGGTTTGGCAGGAAAGGAATTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAG
260 TGGTTT-GCAAGAAAGGCTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAG
3621558 ACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCT
324 ACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCT
* **
3621623 TCATTAGGATAAATGATATTGATG---TTTTTTTGGATGGAAATCTTTTCTTTGCTTTATTTTCT
389 TCATTAGGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCT
3621685 TGAAAATCAAAGTTCATCCCT
454 T-AAAATCAAAGTTCATCCCT
* * * * *
3621706 TAAATAAGTCAAGCATCGATTCCCGCAACAGTCTCCGTTCCTTTCAAGA-TGGGAAGCCAAAACG
1 TAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACA
* * *
3621770 CATTCCCTTCATTAGGATACATGGCAATGATGCTTTGGTG-CTGCAAGAAAAGCATTTCTTTCCA
66 CATTCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTC-GCAAGAAAAGCTTTTCTTTCCA
* * *
3621834 CCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCATGCAAATCCC
130 CCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATACTCATACAAATCCC
* * * * * **
3621899 CATTGTTTTTAGGGTTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTT
195 CATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTT
* * * **
3621964 TTGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTTAGTTTGCACCTCAAATGA
260 TGGTTT-GCAAGAAAGGC-TTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGA
*
3622029 GAC--ACATTGATTCCAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCC
323 GACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCC
*
3622092 TTCATTAGGATAAATGATATTGATGATTTTTTTTTTTGCATAGAAATCTTTT-TTTGCCCTATTT
388 TTCATTAGGATAAATGATATTGATGA--TTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTT
3622156 TCTTAAAAATCAAAGTTCATCCCT
451 TCTT-AAAATCAAAGTTCATCCCT
3622180 TAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACA
1 TAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACA
* *
3622245 CATTCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAAAAAAGCTTTTCTTTCCTC
66 CATTCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAC
** * *
3622310 TGTTTTTGATAGAATCAAAGTTTGTTTCTTATATAAGACAAACATGAATACGCATACAAATCCCC
131 CATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATACTCATACAAATCCCC
* *
3622375 ATTCTTTTCT-TGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATTATATTGATGCTT
196 ATTCTTTT-TAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTT
* * * * *
3622439 TGGATTTGCACGAAATGCTTTTTTCCTACCAATTTTTGTAAAGTCTTAGTTTGCGCCTCAAATGA
260 TGG-TTTGCAAGAAAGGC-TTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGA
3622504 GACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCC
323 GACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCC
* **
3622569 TTCATTAGGATAAATGATATTGATG---TTTTTTTGGATGGAAATCTTTTCTTTGCTTTATTTTC
388 TTCATTAGGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTC
3622631 TTGAAAATCAAAGTTCATCCCT
453 TT-AAAATCAAAGTTCATCCCT
* * * *
3622653 TAAATAAGTCAAGCATCGATTCCCGCAACAGTCTCCGTTCCTTTCAAGA-TGGGAAGCCAAAACA
1 TAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACA
* * *
3622717 CATTCCCTTCATTAGGATACATGGCAATGATGCTTTGGTG-CTGCAAGAAAAGCATTTCTTTCCA
66 CATTCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTC-GCAAGAAAAGCTTTTCTTTCCA
* * *
3622781 CCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCATGCAAATCCC
130 CCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATACTCATACAAATCCC
* * * * * **
3622846 CATTGTTTTTAGGGTTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTT
195 CATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTT
* * * *** **
3622911 TTGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTTAGTTTACACCTCATTTGA
260 TGGTTT-GCAAGAAAGGC-TTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGA
*
3622976 GAC--ACATTGATTCCAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCC
323 GACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCC
*
3623039 TTCATTAGGATAAATGATATTGATGATTTTTTTTTTTTGCATAGAAATCTTTT-TTTGCCCTATT
388 TTCATTAGGATAAATGATATTGATGA---TTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATT
3623103 TTCTTAAAAATCAAAGTTCATCCCT
450 TTCTT-AAAATCAAAGTTCATCCCT
3623128 TAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACA
1 TAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACA
* * *
3623193 CATTCTCTTCATTAGGATACATGGCATTAATGCTTTGGTGTCGCAAAAAAAGCTTTTCTTTCCTC
66 CATTCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAC
** * *
3623258 TGTTTTTGATAGAATCAAAGTTTGTTTCTTATATAAGACAAACATGAATACGCATACAAATCCCC
131 CATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATACTCATACAAATCCCC
* *
3623323 ATTCTTTTCT-TGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATTATATTGATGCTT
196 ATTCTTTT-TAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTT
* * * * *
3623387 TGGATTTGCACGAAATGCTTTTTTCCTACCAATTTTTGTAAAGTCTTAGTTTGCGCCTCAAATGA
260 TGG-TTTGCAAGAAAGGC-TTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGA
3623452 GACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCC
323 GACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCC
* * *
3623517 TTCATTAGGATAAATGATATTGATGAGTTTTTTTTGAATGGAAATCTTTTCTTTGCCTTATTTTC
388 TTCATTAGGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTC
3623582 TTGAAAATCAAAGTTCATCCCT
453 TT-AAAATCAAAGTTCATCCCT
* *
3623604 TAAATAAGACAAGCTTCGATTCTCGCAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACA
1 TAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACA
* * *
3623668 CATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCGAGAAAAGCTTTTCTTTTCAC
66 CATTCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAC
* * * *
3623733 CATTTTTGATAGAATCAAACTTTGTCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCC
131 CATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATACTCATACAAATCCCC
* * * * * **
3623798 ATTTTTTTTAGGATTAGACACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTT
196 ATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTT
* * * ** * *
3623863 GGTTTCGCGAGAAATGCTTTTTTTCGGCCAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAG
261 GGTTT-GCAAGAAAGGC-TTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAG
* * *
3623928 ACAAAAATTGATTCTAGCGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCC
324 ACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCT
3623993 TCATTAGGATAAATGATATTGATGATTTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTC
389 TCATTAGGATAAATGATATTGATGA-TTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTT-
3624058 CTTAAAATCAAAGTTCATCCCT
452 CTTAAAATCAAAGTTCATCCCT
* *
3624080 TAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGATTGGGAAGCCGAAACA
1 TAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACA
* * * * * *
3624145 CATTCTCTTCTTTAGGATACATCGCATTGATGCTTTGGCGTCACAACAAAAGCTTTTCTTTCTAC
66 CATTCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAC
* * *
3624210 CATTTTCGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATACTCATAGAAATCTCC
131 CATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATACTCATACAAATCCCC
* * ** *
3624275 ATTCTTTTCTTGG-TTAGGCACCATAAATATAGTCTTCTTTTTAGGATACATGATATTGATGTTT
196 ATTCTTTT-TAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTT
*
3624339 TGGTTTTGCAAGAAAGG-TATTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGT
260 TGG-TTTGCAAGAAAGGCT-TTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGA
* *
3624403 GGCAAAC-TTGGATTCTAGAGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCC
323 GACAAACATT-GATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCC
* *
3624467 CTTCATTAGGATAAATGGTATTGATGA--TTTTTTTGACATGGAAATCCTTTCTTTGCCCTATTT
387 CTTCATTAGGATAAATGATATTGATGATTTTTTTTTG-CATGGAAATCTTTTCTTTGCCCTATTT
* *
3624530 TCCTTAAAATCAAAGTTCTTCCCG
451 T-CTTAAAATCAAAGTTCATCCCT
* *
3624554 TAAATAAGACACA-CATCGATTCTCATAATAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAAC
1 TAAATAAGACA-AGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAAC
* *
3624617 ACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA
65 ACATTCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA
* * * *
3624682 CCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACACAAACATTACTACTCATGCAATTC
130 CCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAG--ACAAACATGAATACTCATACAAATC
* * * * ** * *
3624747 CCCATTTTTTTTAGGATTAGGCACCATAAACATAGCCTTCTGATTAGGATAGACAATATTGACGT
193 CCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGC
* *
3624812 TTTAGTTATGCAAGAAAGGCATTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATG
258 TTTGGTT-TGCAAGAAAGGCTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATG
3624877 AGACAAACATAT-ATTCTAGTGATGATCTTCATTCA-TTTGTGATTAGGCACTATAAACACATTC
322 AGACAAACAT-TGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* * * *
3624940 CCTTCATTAGGATAAATGATGTTGAAGACTTTTTTTTTGCATAGAAATCTTTTCTTTGCCCCATT
386 CCTTCATTAGGATAAATGATATTGATGA-TTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATT
*
3625005 TTCTTGAAAATCAAAGTTCATGCCT
450 TTCTT-AAAATCAAAGTTCATCCCT
* * * * * * * *
3625030 TAAATAAGACAGGCATAGATTCTCGTAACGGTCTCCATTTCGTTCAAGGCTGGGATGCCGAAACA
1 TAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACA
* * * * *
3625095 CATTCACTTCATTAGGATACATCGCATTGATGCTTTGGTGTCACAACAAAAGCTTTTCTTTCCGC
66 CATTCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAC
* * * * * *
3625160 CATTTTTGATAGAATCAAAGTTTGTCTCTTACACAAGATAAACACGAATACTCATAGAAATCTCC
131 CATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATACTCATACAAATCCCC
* * ** *
3625225 ATTCTTTTCTTGG-TTAGGCACCATAAACCTAGTCTTCTTTTTAGGATACATGATATTGATGTTT
196 ATTCTTTT-TAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTT
*
3625289 TGGTTTTGCAAGAAAGG-TATTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGT
260 TGG-TTTGCAAGAAAGGCT-TTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGA
* * * *
3625353 GGCAAAC-TTGGATTCTAGAGATGATCTTCATTCATTTTATGATTAGGCACTGTAAACACATTCC
323 GACAAACATT-GATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCC
* * * *
3625417 CTTCATTAGGATAAATGGTATTGATGA-TTTTCTTTGACAGGGAAATCCTTTCTTTGCCCTATTT
387 CTTCATTAGGATAAATGATATTGATGATTTTTTTTTG-CATGGAAATCTTTTCTTTGCCCTATTT
* *
3625481 TCCTTAAAATCAAAGTTCTTCCCG
451 T-CTTAAAATCAAAGTTCATCCCT
*
3625505 TAAATAAGACACA-CATCGATTCTCATAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAAC
1 TAAATAAGACA-AGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAAC
* *
3625568 ACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA
65 ACATTCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA
* * * *
3625633 TCATTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTG-CTACTCATGCAAATCC
130 CCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACA-TGAATACTCATACAAATCC
* * * * **
3625697 CCATTTTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCT
194 CCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCT
* * ** * * * *
3625762 TTTGTTCCGCAAGAAATGTTTTTTTCCCACAAATTATTGTAATGTCTAAGTTTGCGCCTCAAATG
259 TTGGTT-TGCAAGAAA-GGCTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATG
* * * *
3625827 AGACAAACATTGATTCTAGTGATGATCTTTACTCATTTTGTGATTAGGCACCACAAACACATT
322 AGACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
3625890 TTGATGAAAA
Statistics
Matches: 7036, Mismatches: 816, Indels: 257
0.87 0.10 0.03
Matches are distributed among these distances:
469 1 0.00
470 302 0.04
471 158 0.02
472 305 0.04
473 214 0.03
474 1190 0.17
475 2766 0.39
476 1568 0.22
477 437 0.06
478 95 0.01
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (473 bp):
TAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACA
CATTCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAC
CATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATACTCATACAAATCCCC
ATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTT
GGTTTGCAAGAAAGGCTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGAC
AAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTC
ATTAGGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCTTA
AAATCAAAGTTCATCCCT
Found at i:3619956 original size:950 final size:947
Alignment explanation
Indices: 3617434--3625889 Score: 11566
Period size: 951 Copynumber: 8.9 Consensus size: 947
3617424 AAACATATCC
* * * * * * * *
3617434 TAAAAAAGACAAGCATTGATCCTCGTAATAGTCACCATTCTTTTCAAGATTGGGTAGCCAAAACA
1 TAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACA
* * * * * *
3617499 CATTCCCTTCATTAGGATACGTGCCATTGATGCCTTGGTTTTGCAACAAAAGCTTTTCTTTCCAC
66 CATTCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAACAAAAGCTTTTCTTTCCAC
* * * * **
3617564 CTTTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACGTGAAAACTCATACTAATCCCC
131 CATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATAGTCATAGAAATCCCC
* * * * *
3617629 AATCTTTT-TAGGATTAGGCACCATAAACATAGTCTTCTTACTAGGATACATCATATTGATGCTT
196 ATTCTTTTCTTGG-TTAGGCACCATAAACATAGTCTTCTTATTAGGATACATGATATTGATGTTT
* * *
3617693 TGGTTTTGCAAGAAAGGCT-TTTTTCCACCAATTTTTATAAAGTCTAAGTTCGTGCCTCAAATGA
260 TGGTTTTGCAAGAAAGG-TATTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGA
** * * * * *
3617757 GACTGACATAGATTCTAGTAATGATCTTCATTCATATTGTGATTAGGCACAATAAACACATT-CT
324 GACAAAC-TTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCC
* * * *
3617821 TCTCATTAGGATAAATGATATTAATGATTTTGTTTTTGCATGAAAATATTTTCTTTGCCCTATTT
388 T-TCATTAGGATAAATGATATTGATGATTTT-TTTTGGCATGGAAATCTTTTCTTTGCCCTATTT
* * *
3617886 TCCTTAAAATCAAAGTTCATCCCCTAAATAAGACAAGCATTGATTCTCGGAACAGTCTCCATTCC
451 TCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCC
* * * *
3617951 TTTCAAGACTGGGATGCCAAAACACATTCTCTTCATTAGGATACATCGCATTGATGCTTTGCTGT
516 TTTCAAGA-TGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGT
* * * *
3618016 CACAACAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTTGTCTCTTATATAAGACGA
580 CGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAA
* * * * * * * *
3618081 ACATGAATAGTCATAG-AAATCTCCATTCTTTTCTTGG-TTAGGCACCATAAACTTAGTCTTCTT
645 ACATTACTACTCAT-GCAAATCCCCATT-TTTT-TGGGATTAGGCACCATAAACATAATCTTCTC
* * ** * * * *
3618144 TTTAGGATACATGATATTGATGCTTTGGTTTTGCAGGAAAGG-TATTTTCCCACCAATTTTTGTA
707 ATTAGGATAAACCATATTGATGCTTTAGTTTCGCAAGAAAGGCT-TTTTCCCACCAATTATTGTA
* * * *
3618208 AAGTATAAGTTTGTGCCTCAAATGTGACAAAC-TTGGATTCTAGTGATGATCTTAATTCATTTTG
771 AAGTCTAAGTTTGCGCCTCAAATGAGACAAACATT-GATTCTAGTGATGATCTTCATTCATTTTG
* * * * * * * **
3618272 TGATTAGGCTCCAGAAACACATTTTCC-TCAATAGGATAAATGATATTGACGATTTTCTTTCACA
835 TGATTAGGCACTATAAACACA-TTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGCA
* * *
3618336 T-GTAAATCTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCTTCCCC
899 TAG-AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT
** * * *
3618385 TAAATAAGACCCGCATCGATTCTCATAACATTCTCCATTCCTTTCGAGACTGGGAAGCCAAAACA
1 TAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACA
* * * *
3618450 CATTTTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAAAAAAGTTTTTCTTTCCTC
66 CATTCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAACAAAAGCTTTTCTTTCCAC
** * *
3618515 TGTTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATACG-CGTACAAAT-CC
131 CATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATA-GTCATAGAAATCCC
* ** * * * * *
3618578 CATTCTTTTTGTTGACTAGGAACCATAAACATAGTCTTCTCATTAGCATACATTATATTGATGCT
195 CATTC-TTTTCTTGGTTAGGCACCATAAACATAGTCTTCTTATTAGGATACATGATATTGATGTT
* * * * * *
3618643 TTGGATTTGCCAGAAATGCTTTTTTCCCACCAATTTTTGTAAGGTCTAAGTTTGTGGCTCAAATG
259 TTGGTTTTGCAAGAAA-GGTATTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATG
* * * * ** * *
3618708 AGACAAACATGGATTTTAGCGATGAACTTGGTTCATTTTGTGATTAGGCACTAGAAAGACATTCT
323 AGACAAAC-TTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC-
* * *
3618773 CC-TCAATAGGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTATCTTTGCCCTATTT
386 CCTTCATTAGGATAAATGATATTGATGATTTTTTTTGGCATGGAAATCTTTTCTTTGCCCTATTT
* * * *
3618837 TTCTTAAAATCAAAATTCATTCCTTGAATAAGAC-AGACATCGATTCTCGTAACAGTCTCCATTC
451 TCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAG-CATCGATTCTCGTAACAGTCTCCATTC
** * * *
3618901 CTTTCAAGACTGGGAAGCCAAAACACATTCTTTTTATTAGGATACATGGCATAGACGCTTTGGTG
515 CTTTCAAGA-TGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTG
* * * * *
3618966 TCACAAGAAACGCTTTTCTTTACACCGTTTTTGATAGAATCAAAGTTTATCTCTTATATTAA-AC
579 TCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATA-TAAGAC
* * * * * *
3619030 AAACATTAATATTCATACAAATCCCCATTTTTTTGGGATTAGGCAACATAAACATATTCTTGTCA
643 AAACATTACTACTCATGCAAATCCCCATTTTTTTGGGATTAGGCACCATAAACATAATCTTCTCA
* ** ** *
3619095 TTAGGATATATGATATTGATGCTTT-GTTTCGCAAGAAAGGCTTTCTTCTAACCAATTTTTGTAA
708 TTAGGATAAACCATATTGATGCTTTAGTTTCGCAAGAAAGGCTTT-TTCCCACCAATTATTGTAA
** * **
3619159 AGTCTAAGTTTATGCCTCAAATAAGACAAACAAGGATTCTAGTGATGATCTTCATTCATTTTGTG
772 AGTCTAAGTTTGCGCCTCAAATGAGACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTG
*
3619224 ATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGAAGACTTTTTTTTTGCATA
837 ATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGA-TTTTTTTTTGCATA
* * *
3619289 GAAATCTTTTCTTTGCCCCATTTT-CTTGAAAGTCAAAGTTCATGCCT
901 GAAATCTTTTCTTTGCCCTATTTTCCTT-AAAATCAAAGTTCATCCCT
* * * *
3619336 TAAATAAGAC-AGCCATCGATTCTCGTAACGGTCTCCATT-CTGTTTAAGGCTGGGAAGCCGAAA
1 TAAATAAGACAAG-CATCGATTCTCGTAACAGTCTCCATTCCT-TTCAAGACTGGGAAGCCAAAA
* * *
3619399 CACATTCTCTTCATTAGGATACATCGCATTGATGCTTTGTTGTCACAACAAAAGCTTTTCTTTCC
64 CACATTCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAACAAAAGCTTTTCTTTCC
*
3619464 ACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATAGTCATAGAAATCT
129 ACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATAGTCATAGAAATCC
* *
3619529 CCATTCTTTTCTTGGTTAGGCACCATAAACTTAGTCTTCTTTTTAGGATACATGATATTGATGTT
194 CCATTCTTTTCTTGGTTAGGCACCATAAACATAGTCTTCTTATTAGGATACATGATATTGATGTT
* *
3619594 TTGGTTTTGCAAGAAAGGTATTTTCCCACCAATTTTTGTAAAGTATAAGTTTGTGCCTCAAATGT
259 TTGGTTTTGCAAGAAAGGTATTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGA
* * * *
3619659 GACAAACTTGGATTCTAGTGATGATCTTAATTCATTTTGTGATTAGGCTCTAGAAACACATTTTC
324 GACAAACTT-GATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACA-TTCC
* * ** *
3619724 C-TCAATAGGATAAATGATATTGACT-ATTTTCTTTCACATGGAAATCTTTCCTTTGCCCTATTT
387 CTTCATTAGGATAAATGATATTGA-TGATTTTTTTTGGCATGGAAATCTTTTCTTTGCCCTATTT
* * ** * * **
3619787 TCCTTAAAATCAAAGTTCATCCCCTAAACAAGACCCGCATCGATTCTTGTAATAGTCTCTGTTCC
451 TCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCC
* * *
3619852 TTTCATGACTGGGAAGCCAAATCAAATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGT
516 TTTCAAGA-TGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGT
* * * * * *
3619917 TGCAAGAAAAGCTTTCCTTTCGATCATTTTTGATAGAATCAAAGTTTGCCTCTTATATACGACAA
580 CGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAA
* * * ** *
3619982 ACATTAATACTCATACAAATCCCCATTCTTTTCT-TGATTAGGCACCATAAACATAGCCTTCTGA
645 ACATTACTACTCATGCAAATCCCCATT-TTTT-TGGGATTAGGCACCATAAACATAATCTTCTCA
* * *** * *
3620046 TTAGGATAGACGATATTGACATTTTAGTTAT-GCAAGAAAGGCATTTTCCCACCAATTTTTGTAA
708 TTAGGATAAACCATATTGATGCTTTAGTT-TCGCAAGAAAGGCTTTTTCCCACCAATTATTGTAA
* * *
3620110 AGCCTAAGTTTGTGCCTCAAATGAGACAAACATAT-ATTCTAGTGACGATCTTCATTCATTTTGT
772 AGTCTAAGTTTGCGCCTCAAATGAGACAAACAT-TGATTCTAGTGATGATCTTCATTCATTTTGT
* * * *
3620174 GATTAGGCACTATAAACACATTCTCC-TCTTTAGGATAAATGGTATTGATGATTTTCTTTTACAT
836 GATTAGGCACTATAAACACATTC-CCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGCAT
* * * *
3620238 GGAAATCCTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCTTCCCG
900 AGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT
* *
3620286 TAAATAAGACACGCATCGATTCTCATAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACA
1 TAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACA
* * * * * *
3620350 CAATCCCTTCATTAGGATACATGGCATTGATACTTTGGTATCGCAAGAAAAGCTTTTCCTTCCAC
66 CATTCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAACAAAAGCTTTTCTTTCCAC
* * * * *
3620415 CATTTTTAATAGAATCAAGGTTTGTCTCTTATATAAGACAAACATTACTACTCAT-GCAAATCCC
131 CATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATAGTCATAG-AAATCCC
* * * * ** *
3620479 CATT-TTTT-TTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCACATTGATGC
195 CATTCTTTTCTT-GG-TTAGGCACCATAAACATAGTCTTCTTATTAGGATACATGATATTGATG-
* * *
3620542 TTTT-GTTTTGCAAGAAAGGCATTTTTCCCACCAATTATTGTAAAGTCTAAGTTCGTGCCTCAAA
257 TTTTGGTTTTGCAAGAAAGGTA-TTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAA
* *
3620606 TGAGACAAACATTGATTCAAGTGTTGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
321 TGAGACAAAC-TTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
* *
3620671 CCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGCAT-GAAATCTTTTCTTTGCCTTATT
385 CCCTTCATTAGGATAAATGATATTGATGATTTTTTTTGGCATGGAAATCTTTTCTTTGCCCTATT
* * * *
3620735 TTCCTGAAAATCAAAGTTCATCCCTAAAATAAGACAAGCATCGATTCTCTTAACAATCTCCATTC
450 TTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTC
* * * * *
3620800 CGTCCAAGACTGGGAAGCCGAAACACATTCTCTTCATTAGGATACATCGCATTGATGCTTTGGTG
515 CTTTCAAGA-TGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTG
* * *
3620865 TCACAACAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGAAA
579 TCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACA
* ** *
3620930 AACATTACTACTCAAGCAAATCCCCATTTTTTTGGGATTAGGCACCATAAACATAGCCTTCTGAT
644 AACATTACTACTCATGCAAATCCCCATTTTTTTGGGATTAGGCACCATAAACATAATCTTCTCAT
* * * * * *
3620995 TAGGATAGACGATATTGACGTTTTAGTTAT-GCAAGAAAGGTTTTTTTTCCACCAATTATTGTAA
709 TAGGATAAACCATATTGATGCTTTAGTT-TCGCAAGAAAGG-CTTTTTCCCACCAATTATTGTAA
* * *
3621059 AGTCTTAGTTTGCGCCTCAAATGAGACAAACATTGATTCTAGTGCTGATCTTCATTCATTCTGTG
772 AGTCTAAGTTTGCGCCTCAAATGAGACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTG
*
3621124 ATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGCATGG
837 ATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGCATAG
*
3621189 AAAACTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT
902 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT
* ** *
3621235 TAAATAAGACAAGCGTTAATTCTCGTAACAGTCTCCATTCCATTCAAGACTGGGAAGCCAAAACA
1 TAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACA
* * * *
3621300 CATTCTCTTCATTAAGATACATTGCATTAATGCTTTGGTGTCACAACAAAAGCTTTTCTTTCCAC
66 CATTCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAACAAAAGCTTTTCTTTCCAC
* *
3621365 CATTTTTGATAAAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATAGTCATAGAAATCTCC
131 CATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATAGTCATAGAAATCCCC
* *
3621430 A-TCTTTTCTTGGTTAGGCACCATAAACCTAGTCTTCTTTTTAGGATACATGATATTGATGTTTT
196 ATTCTTTTCTTGGTTAGGCACCATAAACATAGTCTTCTTATTAGGATACATGATATTGATGTTTT
* * *
3621494 GGTTTGGCAGGAAAGGAATTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGA
261 GGTTTTGCAAGAAAGGTATTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGA
3621559 CAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTT
326 CAAAC-TTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTT
**
3621624 CATTAGGATAAATGATATTGATG--TTTTTTTGG-ATGGAAATCTTTTCTTTGCTTTATTTT-CT
390 CATTAGGATAAATGATATTGATGATTTTTTTTGGCATGGAAATCTTTTCTTTGCCCTATTTTCCT
* * * *
3621685 TGAAAATCAAAGTTCATCCCTTAAATAAGTCAAGCATCGATTCCCGCAACAGTCTCCGTTCCTTT
455 T-AAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTT
* *
3621750 CAAGATGGGAAGCCAAAACGCATTCCCTTCATTAGGATACATGGCAATGATGCTTTGGTG-CTGC
519 CAAGATGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTC-GC
*
3621814 AAGAAAAGCATTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACA
583 AAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACA
*
3621879 TTACTACTCATGCAAATCCCCATTGTTTTTAGGG-TTAGGCACCATAGACATAATCTTCTCATTA
648 TTACTACTCATGCAAATCCCCATT-TTTTT-GGGATTAGGCACCATAAACATAATCTTCTCATTA
*
3621943 GGATAAACCATATTGATGCTTTTGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGT
711 GGATAAACCATATTGATGCTTTAGTTTCGCAAGAAAGGC-TTTTTCCCACCAATTATTGTAAAGT
* * *
3622008 CTTAGTTTGCACCTCAAATGAGAC--ACATTGATTCCAGTGATGATCTTCATTCATTTTGTGATT
775 CTAAGTTTGCGCCTCAAATGAGACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATT
3622071 AGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTTTGCATAGA
840 AGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGA--TTTTTTTTTGCATAGA
3622136 AATCTTTT-TTTGCCCTATTTT-CTTAAAAATCAAAGTTCATCCCT
903 AATCTTTTCTTTGCCCTATTTTCCTT-AAAATCAAAGTTCATCCCT
3622180 TAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACA
1 TAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACA
* *
3622245 CATTCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAAAAAAGCTTTTCTTTCCTC
66 CATTCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAACAAAAGCTTTTCTTTCCAC
** * *
3622310 TGTTTTTGATAGAATCAAAGTTTGTTTCTTATATAAGACAAACATGAATACG-CATACAAATCCC
131 CATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATA-GTCATAGAAATCCC
* * * *
3622374 CATTCTTTTCTTGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATTATATTGATGCTT
195 CATTCTTTTCTTGGTTAGGCACCATAAACATAGTCTTCTTATTAGGATACATGATATTGATGTTT
* * * * * * *
3622439 TGGATTTGCACGAAATGCTTTTTTCCTACCAATTTTTGTAAAGTCTTAGTTTGCGCCTCAAATGA
260 TGGTTTTGCAAGAAA-GGTATTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGA
3622504 GACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCC
324 GACAAAC-TTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCC
**
3622569 TTCATTAGGATAAATGATATTGATG--TTTTTTTGG-ATGGAAATCTTTTCTTTGCTTTATTTT-
388 TTCATTAGGATAAATGATATTGATGATTTTTTTTGGCATGGAAATCTTTTCTTTGCCCTATTTTC
* * * *
3622630 CTTGAAAATCAAAGTTCATCCCTTAAATAAGTCAAGCATCGATTCCCGCAACAGTCTCCGTTCCT
453 CTT-AAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCT
*
3622695 TTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCAATGATGCTTTGGTG-CT
517 TTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTC-
*
3622759 GCAAGAAAAGCATTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAA
581 GCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAA
*
3622824 CATTACTACTCATGCAAATCCCCATTGTTTTTAGGG-TTAGGCACCATAGACATAATCTTCTCAT
646 CATTACTACTCATGCAAATCCCCATT-TTTTT-GGGATTAGGCACCATAAACATAATCTTCTCAT
*
3622888 TAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTATTGTAAA
709 TAGGATAAACCATATTGATGCTTTAGTTTCGCAAGAAAGGC-TTTTTCCCACCAATTATTGTAAA
* * * ** *
3622953 GTCTTAGTTTACACCTCATTTGAGAC--ACATTGATTCCAGTGATGATCTTCATTCATTTTGTGA
773 GTCTAAGTTTGCGCCTCAAATGAGACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGA
3623016 TTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTTTTGCAT
838 TTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGA---TTTTTTTTTGCAT
3623081 AGAAATCTTTT-TTTGCCCTATTTT-CTTAAAAATCAAAGTTCATCCCT
900 AGAAATCTTTTCTTTGCCCTATTTTCCTT-AAAATCAAAGTTCATCCCT
3623128 TAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACA
1 TAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACA
* * *
3623193 CATTCTCTTCATTAGGATACATGGCATTAATGCTTTGGTGTCGCAAAAAAAGCTTTTCTTTCCTC
66 CATTCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAACAAAAGCTTTTCTTTCCAC
** * *
3623258 TGTTTTTGATAGAATCAAAGTTTGTTTCTTATATAAGACAAACATGAATACG-CATACAAATCCC
131 CATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATA-GTCATAGAAATCCC
* * * *
3623322 CATTCTTTTCTTGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATTATATTGATGCTT
195 CATTCTTTTCTTGGTTAGGCACCATAAACATAGTCTTCTTATTAGGATACATGATATTGATGTTT
* * * * * * *
3623387 TGGATTTGCACGAAATGCTTTTTTCCTACCAATTTTTGTAAAGTCTTAGTTTGCGCCTCAAATGA
260 TGGTTTTGCAAGAAA-GGTATTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGA
3623452 GACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCC
324 GACAAAC-TTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCC
* *
3623517 TTCATTAGGATAAATGATATTGATGAGTTTTTTTT-GAATGGAAATCTTTTCTTTGCCTTATTTT
388 TTCATTAGGATAAATGATATTGATGA-TTTTTTTTGGCATGGAAATCTTTTCTTTGCCCTATTTT
* *
3623581 -CTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGCTTCGATTCTCGCAACAGTCTCCATTCC
452 CCTT-AAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCC
3623645 TTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTC
516 TTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTC
* * *
3623710 GCGAGAAAAGCTTTTCTTTTCACCATTTTTGATAGAATCAAACTTTGTCTCTTATATAAGACAAA
581 GCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAA
* * *
3623775 CATTACTACTCATGCAAATCCCCATTTTTTTTAGGATTAGACACCATAGACATAATCTTCTCATT
646 CATTACTACTCATGCAAATCCCCA-TTTTTTTGGGATTAGGCACCATAAACATAATCTTCTCATT
* * * * **
3623840 AGGATAAACCATATTGATGCTTTGGTTTCGCGAGAAATGCTTTTTTTCGGCCAATTATTGTAAAG
710 AGGATAAACCATATTGATGCTTTAGTTTCGCAAGAAAGGC-TTTTTCCCACCAATTATTGTAAAG
* *
3623905 TCTAAGTTTGCGCCTCAAATGAGACAAAAATTGATTCTAGCGATGATCTTCATTCATTTTGTGAT
774 TCTAAGTTTGCGCCTCAAATGAGACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGAT
* *
3623970 TAGGCACTATAAACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTTTTTTTGCATGGA
839 TAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGA-TTTTTTTTTGCATAGA
3624035 AATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT
903 AATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT
* *
3624080 TAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGATTGGGAAGCCGAAACA
1 TAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACA
* * * * *
3624145 CATTCTCTTCTTTAGGATACATCGCATTGATGCTTTGGCGTCACAACAAAAGCTTTTCTTTCTAC
66 CATTCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAACAAAAGCTTTTCTTTCCAC
* * *
3624210 CATTTTCGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATACTCATAGAAATCTCC
131 CATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATAGTCATAGAAATCCCC
* *
3624275 ATTCTTTTCTTGGTTAGGCACCATAAATATAGTCTTCTTTTTAGGATACATGATATTGATGTTTT
196 ATTCTTTTCTTGGTTAGGCACCATAAACATAGTCTTCTTATTAGGATACATGATATTGATGTTTT
* *
3624340 GGTTTTGCAAGAAAGGTATTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGTGG
261 GGTTTTGCAAGAAAGGTATTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGA
*
3624405 CAAACTTGGATTCTAGAGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTT
326 CAAACTT-GATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTT
* * *
3624470 CATTAGGATAAATGGTATTGATGA-TTTTTTTGACATGGAAATCCTTTCTTTGCCCTATTTTCCT
390 CATTAGGATAAATGATATTGATGATTTTTTTTGGCATGGAAATCTTTTCTTTGCCCTATTTTCCT
* * * *
3624534 TAAAATCAAAGTTCTTCCCGTAAATAAGACACA-CATCGATTCTCATAATAGTCTCCATTCCTTT
455 TAAAATCAAAGTTCATCCCTTAAATAAGACA-AGCATCGATTCTCGTAACAGTCTCCATTCCTTT
*
3624598 CAAGATGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCA
519 CAAGATGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCA
3624663 AGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACACAAAC
584 AGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAG--ACAAAC
* * ** *
3624728 ATTACTACTCATGCAATTCCCCATTTTTTTTAGGATTAGGCACCATAAACATAGCCTTCTGATTA
647 ATTACTACTCATGCAAATCCCCA-TTTTTTTGGGATTAGGCACCATAAACATAATCTTCTCATTA
* * * * * *
3624793 GGATAGACAATATTGACGTTTTAGTTAT-GCAAGAAAGGCATTTTCCCACCAATTTTTGTAAAGT
711 GGATAAACCATATTGATGCTTTAGTT-TCGCAAGAAAGGCTTTTTCCCACCAATTATTGTAAAGT
*
3624857 CTAAGTTTGTGCCTCAAATGAGACAAACATAT-ATTCTAGTGATGATCTTCATTCA-TTTGTGAT
775 CTAAGTTTGCGCCTCAAATGAGACAAACAT-TGATTCTAGTGATGATCTTCATTCATTTTGTGAT
* *
3624920 TAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATGTTGAAGACTTTTTTTTTGCATAGA
839 TAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGA-TTTTTTTTTGCATAGA
* *
3624985 AATCTTTTCTTTGCCCCATTTT-CTTGAAAATCAAAGTTCATGCCT
903 AATCTTTTCTTTGCCCTATTTTCCTT-AAAATCAAAGTTCATCCCT
* * * * * * * *
3625030 TAAATAAGACAGGCATAGATTCTCGTAACGGTCTCCATTTCGTTCAAGGCTGGGATGCCGAAACA
1 TAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACA
* * * *
3625095 CATTCACTTCATTAGGATACATCGCATTGATGCTTTGGTGTCACAACAAAAGCTTTTCTTTCCGC
66 CATTCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAACAAAAGCTTTTCTTTCCAC
* * * * * *
3625160 CATTTTTGATAGAATCAAAGTTTGTCTCTTACACAAGATAAACACGAATACTCATAGAAATCTCC
131 CATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATAGTCATAGAAATCCCC
* *
3625225 ATTCTTTTCTTGGTTAGGCACCATAAACCTAGTCTTCTTTTTAGGATACATGATATTGATGTTTT
196 ATTCTTTTCTTGGTTAGGCACCATAAACATAGTCTTCTTATTAGGATACATGATATTGATGTTTT
* *
3625290 GGTTTTGCAAGAAAGGTATTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGTGG
261 GGTTTTGCAAGAAAGGTATTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGA
* * *
3625355 CAAACTTGGATTCTAGAGATGATCTTCATTCATTTTATGATTAGGCACTGTAAACACATTCCCTT
326 CAAACTT-GATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTT
* * * * *
3625420 CATTAGGATAAATGGTATTGATGATTTTCTTTGACAGGGAAATCCTTTCTTTGCCCTATTTTCCT
390 CATTAGGATAAATGATATTGATGATTTTTTTTGGCATGGAAATCTTTTCTTTGCCCTATTTTCCT
* * *
3625485 TAAAATCAAAGTTCTTCCCGTAAATAAGACACA-CATCGATTCTCATAACAGTCTCCATTCCTTT
455 TAAAATCAAAGTTCATCCCTTAAATAAGACA-AGCATCGATTCTCGTAACAGTCTCCATTCCTTT
*
3625549 CAAGATGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCA
519 CAAGATGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCA
* *
3625614 AGAAAAGCTTTTCTTTCCATCATTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACAT
584 AGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACAT
* * *
3625679 TGCTACTCATGCAAATCCCCATTTTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGG
649 TACTACTCATGCAAATCCCCA-TTTTTTTGGGATTAGGCACCATAAACATAATCTTCTCATTAGG
* * ** * *
3625744 ATAAACCATATTGATGCTTTTGTTCCGCAAGAAATGTTTTTTTCCCACAAATTATTGTAATGTCT
713 ATAAACCATATTGATGCTTTAGTTTCGCAAGAAA-GGCTTTTTCCCACCAATTATTGTAAAGTCT
* *
3625809 AAGTTTGCGCCTCAAATGAGACAAACATTGATTCTAGTGATGATCTTTACTCATTTTGTGATTAG
777 AAGTTTGCGCCTCAAATGAGACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAG
* *
3625874 GCACCACAAACACATT
842 GCACTATAAACACATT
3625890 TTGATGAAAA
Statistics
Matches: 6805, Mismatches: 607, Indels: 186
0.90 0.08 0.02
Matches are distributed among these distances:
944 87 0.01
945 351 0.05
946 290 0.04
947 606 0.09
948 693 0.10
949 804 0.12
950 1637 0.24
951 1722 0.25
952 527 0.08
953 87 0.01
954 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (947 bp):
TAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACA
CATTCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAACAAAAGCTTTTCTTTCCAC
CATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATAGTCATAGAAATCCCC
ATTCTTTTCTTGGTTAGGCACCATAAACATAGTCTTCTTATTAGGATACATGATATTGATGTTTT
GGTTTTGCAAGAAAGGTATTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGA
CAAACTTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTC
ATTAGGATAAATGATATTGATGATTTTTTTTGGCATGGAAATCTTTTCTTTGCCCTATTTTCCTT
AAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCA
AGATGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAG
AAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATTA
CTACTCATGCAAATCCCCATTTTTTTGGGATTAGGCACCATAAACATAATCTTCTCATTAGGATA
AACCATATTGATGCTTTAGTTTCGCAAGAAAGGCTTTTTCCCACCAATTATTGTAAAGTCTAAGT
TTGCGCCTCAAATGAGACAAACATTGATTCTAGTGATGATCTTCATTCATTTTGTGATTAGGCAC
TATAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGCATAGAAATCTTTT
CTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT
Found at i:3627092 original size:158 final size:156
Alignment explanation
Indices: 3626740--3627569 Score: 399
Period size: 158 Copynumber: 5.3 Consensus size: 156
3626730 TGGGAAGCCA
* ** * * * *
3626740 AAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTT
1 AAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTTTGTTTCGCAAGAAATGCTTTT-TT
* ** * * * *
3626805 TCCA-TTATTATTGATAGAATCAAAGTTTGC-CTCTTATATAAGACAAACATT-ACTACTCA-TG
65 CCCACAAATTATTG-TAAAATCAAAGTTTGCAC-CTCA-AAAAGACAAACATTGA-TTCT-AGTG
* * **
3626866 CA-AATCCCCATTTTTTTTAG-GATTAGGCACCAT
125 -ATGATCTCCATTCATTTT-GTGA-TAGGCACCAT
* * * * ** *
3626899 AGACATAAT-CTTCTCATTAGGATAAACCATTTTGATGCTTTTGTTTCGCAAGAAATGCTTTTTT
1 AAACACATTCCCT-TCATTAGGATAAATGATATTGATGCTTTTGTTTCGCAAGAAATGCTTTTTT
** **
3626963 CCCACAAATTATTGTAATGTGTAAGTTTGCACCTCAAAAGAGACAAACATTGATTCTAGTGATGA
65 CCCACAAATTATTGTAAAATCAAAGTTTGCACCTCAAAA-AGACAAACATTGATTCTAGTGATGA
* *
3627028 TCTTCATTCATTTTGTGATTAGGCACTAT
129 TCTCCATTCATTTTGTGA-TAGGCACCAT
* *
3627057 AAACACATTCCCTTCATTAGGATAAATGATATTGATG-TTTT-TTT-GGATGGAAAT-CTTTTCT
1 AAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTTTGTTTCGCA-AGAAATGC-TTT-T
* *** ** * * * * * *
3627118 TTGCTTTATTTTCTTG-AAAATCAAAG-TT-CATCCCTTAAATAAGTCAAGCATCGATTCTCGT-
63 TTCCCACAAATTATTGTAAAATCAAAGTTTGCA--CCTCAAA-AAGACAAACATTGATTCTAGTG
** * *** * *
3627179 AACAGTCTCCATTCCTTTCAAGATGGGAAGCCA-
125 ATGA-TCTCCATTCATTTTGTGATAGGCA-CCAT
* ** * * * * *
3627212 AAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCTCCAGAAAAGCTTTTCTT
1 AAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTTTGTTTCGCAAGAAATGCTTTT-TT
** * * * ** * * * *
3627277 TTCAC-CATTTTTGATAGAATCAAAGTTTGCTTCTTATATAAGACAAAAATT-ACTACTCA-TGC
65 CCCACAAATTATTG-TAAAATCAAAGTTTGCACCTCA-AAAAGACAAACATTGA-TTCT-AGTG-
* * **
3627339 A-AATCCCCATTTTTTTTAG-GATAGGCACCAT
125 ATGATCTCCATTCATTTT-GTGATAGGCACCAT
* * * * ** *
3627370 AGACATAAT-CTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAAGGCTTTTTT
1 AAACACATTCCCT-TCATTAGGATAAATGATATTGATGCTTTTGTTTCGCAAGAAATGCTTTTTT
* * ** ** *
3627434 CCCACCAATTATTGTAAAGTCTTAGTTTGTGCCTCAAATGAGACAAACATTGATTCTAGTGATGA
65 CCCACAAATTATTGTAAAATCAAAGTTTGCACCTCAAA-AAGACAAACATTGATTCTAGTGATGA
* *
3627499 TCTTCATTCATTTTGTGATTAGGCACTAT
129 TCTCCATTCATTTTGTGA-TAGGCACCAT
*
3627528 AAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTT
1 AAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTTT
3627570 TTTTTGCATG
Statistics
Matches: 484, Mismatches: 145, Indels: 85
0.68 0.20 0.12
Matches are distributed among these distances:
154 2 0.00
155 45 0.09
156 67 0.14
157 84 0.17
158 222 0.46
159 62 0.13
160 2 0.00
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.37
Consensus pattern (156 bp):
AAACACATTCCCTTCATTAGGATAAATGATATTGATGCTTTTGTTTCGCAAGAAATGCTTTTTTC
CCACAAATTATTGTAAAATCAAAGTTTGCACCTCAAAAAGACAAACATTGATTCTAGTGATGATC
TCCATTCATTTTGTGATAGGCACCAT
Found at i:3627572 original size:472 final size:474
Alignment explanation
Indices: 3626585--3627644 Score: 1883
Period size: 472 Copynumber: 2.2 Consensus size: 474
3626575 TGGTTGTCAT
3626585 CACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGC
1 CACATTCCCTTCATTAGGATAAATGATATTGATGA-TTTTTTTTGCATGGAAATCTTTTCTTTGC
3626650 CTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAGTCT
65 CTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAGTCT
3626715 CCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATACTT
130 CCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATACTT
**
3626780 TGGTGTCGCAAGAAAAGCTTTTCTTTCCATTATTATTGATAGAATCAAAGTTTGCCTCTTATATA
195 TGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTATTGATAGAATCAAAGTTTGCCTCTTATATA
*
3626845 AGACAAACATTACTACTCATGCAAATCCCCATTTTTTTTAGGATTAGGCACCATAGACATAATCT
260 AGACAAAAATTACTACTCATGCAAATCCCCATTTTTTTTAGGATTAGGCACCATAGACATAATCT
* *
3626910 TCTCATTAGGATAAACCATTTTGATGCTTTTGTTTCGCAAGAAATGCTTTTTTCCCACAAATTAT
325 TCTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAAGGCTTTTTTCCCACAAATTAT
* *
3626975 TGTAATGTGTAAGTTTGCACCTCAAAAGAGACAAACATTGATTCTAGTGATGATCTTCATTCATT
390 TGTAAAGTCTAAGTTTGCACCTCAAAAGAGACAAACATTGATTCTAGTGATGATCTTCATTCATT
3627040 TTGTGATTAGGCACTATAAA
455 TTGTGATTAGGCACTATAAA
* *
3627060 CACATTCCCTTCATTAGGATAAATGATATTGATG--TTTTTTTGGATGGAAATCTTTTCTTTGCT
1 CACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTGCATGGAAATCTTTTCTTTGCC
* *
3627123 TTATTTTCTTGAAAATCAAAGTTCATCCCTTAAATAAGTCAAGCATCGATTCTCGTAACAGTCTC
66 TTATTTTCTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAGTCTC
*
3627188 CATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTT
131 CATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATACTTT
* * * * *
3627253 GGTGTCTCCAGAAAAGCTTTTCTTTTCACCATTTTTGATAGAATCAAAGTTTGCTTCTTATATAA
196 GGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTATTGATAGAATCAAAGTTTGCCTCTTATATAA
3627318 GACAAAAATTACTACTCATGCAAATCCCCATTTTTTTTAGGA-TAGGCACCATAGACATAATCTT
261 GACAAAAATTACTACTCATGCAAATCCCCATTTTTTTTAGGATTAGGCACCATAGACATAATCTT
*
3627382 CTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTATT
326 CTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAAGGCTTTTTTCCCACAAATTATT
* ** *
3627447 GTAAAGTCTTAGTTTGTGCCTCAAATGAGACAAACATTGATTCTAGTGATGATCTTCATTCATTT
391 GTAAAGTCTAAGTTTGCACCTCAAAAGAGACAAACATTGATTCTAGTGATGATCTTCATTCATTT
3627512 TGTGATTAGGCACTATAAA
456 TGTGATTAGGCACTATAAA
3627531 CACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGC
1 CACATTCCCTTCATTAGGATAAATGATATTGATGA-TTTTTTTTGCATGGAAATCTTTTCTTTGC
3627596 CTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCG
65 CTTATTTTCTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCG
3627645 TGATGACAAC
Statistics
Matches: 557, Mismatches: 25, Indels: 7
0.95 0.04 0.01
Matches are distributed among these distances:
471 196 0.35
472 253 0.45
474 74 0.13
475 34 0.06
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (474 bp):
CACATTCCCTTCATTAGGATAAATGATATTGATGATTTTTTTTGCATGGAAATCTTTTCTTTGCC
TTATTTTCTTGAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAGTCTC
CATTCCTTTCAAGATGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATACTTT
GGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTATTGATAGAATCAAAGTTTGCCTCTTATATAA
GACAAAAATTACTACTCATGCAAATCCCCATTTTTTTTAGGATTAGGCACCATAGACATAATCTT
CTCATTAGGATAAACCATATTGATGCTTTTGTTTCGCAAGAAAGGCTTTTTTCCCACAAATTATT
GTAAAGTCTAAGTTTGCACCTCAAAAGAGACAAACATTGATTCTAGTGATGATCTTCATTCATTT
TGTGATTAGGCACTATAAA
Found at i:3631283 original size:158 final size:158
Alignment explanation
Indices: 3629222--3634160 Score: 1325
Period size: 159 Copynumber: 31.2 Consensus size: 158
3629212 ATTTTCCTTA
** * *
3629222 AAATCAAAGTTCTTCCCTTAAATAAGACACGCATCGATTCTCATAATAGTCTCCACTCCTTTCAA
1 AAATCAAAGTT-TTCCCTTAAATAAGACAAACATCGATTCTCATAATAGTCTCCATTCCTTTCAT
* * ** * *
3629287 GA-TGGGAAGCCA-AAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAA
65 GATTAGGAAGCCATAAACACATTCCCTTCATTAGGATAAATGATATTGATACTTTTGTTTCGCAA
3629350 GAAAAGCTTTTCTTTCCACCATTTTTGAT
130 GAAAAGCTTTTCTTTCCACCATTTTTGAT
* * * * * **
3629379 AGAATCAAAGTTTGCCTCTTATATAAG--AAACAT-TACTACTCATGCAA-A-TCCCCATTTTTT
1 A-AATCAAAGTTTTCC-CTTAAATAAGACAAACATCGA-TTCTCAT--AATAGTCTCCATTCCTT
* * * * * * * ** *
3629439 TTAGGATTAGGCA-CCATAGACAAAAT-CTTCTCATTAGGATAAACCATATTGATGCTTTTGTTT
61 TCATGATTAGGAAGCCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATACTTTTGTTT
* * *
3629502 CTCAAGAAAAGC-TTT-TTTCCACAAATTATTG-T
125 CGCAAGAAAAGCTTTTCTTTCCAC-CATTTTTGAT
* * * ** ** * * * *
3629534 AAAGTCTAAGTTTGCACCTCAAATGGGACAAACATTAATTCT-AGTGAT-GATATTCATTCATTT
1 AAA-TCAAAGTTTTC-CCTTAAATAAGACAAACATCGATTCTCA-TAATAG-TCTCCATTCCTTT
* * * *
3629597 --TG--TAGGCA-CTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGA-TTTTTTTTT
62 CATGATTAGGAAGCCATAAACACATTCCCTTCATTAGGATAAATGATATTGAT-ACTTTTGTTTC
* * * **
3629656 GGATGAAAATCTTTTCTTTGCC-TTATTTTCTTGA-
126 GCAAGAAAAGCTTTTCTTT-CCACCA-TTT-TTGAT
* * ** * *
3629690 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAA
1 AAATCAAAGTT-TTCCCTTAAATAAGACAAACATCGATTCTCATAATAGTCTCCATTCCTTTCAT
* ** * ** * * * *
3629755 GA-TGGGAAGCCA-AAACACATTCCCTTCATTAGGGCACATGGCATTGATGCTTTGGTGTCTCAA
65 GATTAGGAAGCCATAAACACATTCCCTTCATTAGGATAAATGATATTGATACTTTTGTTTCGCAA
*
3629818 GAAAAGCTTTTCTTTTCACCATTTTTGAT
130 GAAAAGCTTTTCTTTCCACCATTTTTGAT
* * * * **
3629847 AGAATCAAAGTTTGTCTCTTATATAAGACAAACAT-TACTACTCATGCAA-A-TC-CTCATTTTT
1 A-AATCAAAGTTT-TCCCTTAAATAAGACAAACATCGA-TTCTCAT--AATAGTCTC-CA-TTCC
* * * * * * * ** *
3629908 TTTTAGGATTAGGCA-CCATAGACATAAT-CTTCTCATTAGGATAAACCATATTGATGCTTTTGT
59 TTTCATGATTAGGAAGCCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATACTTTTGT
* ** * *
3629971 TTTGCAAGAAGGGCTTTT-TTCCCACCAATTATTG-T
123 TTCGCAAGAAAAGCTTTTCTTTCCACC-ATTTTTGAT
* * * * * * * *
3630006 AAAGTCTAAGTTTGCGCCTCAAATGAGACGAACATTGATTCT-AGTGAT-GATC-CTCATTCTTT
1 AAA-TCAAAGTTTTC-CCTTAAATAAGACAAACATCGATTCTCA-TAATAG-TCTC-CATTCCTT
** * * * * * *
3630068 TTGTGATTACGCA-CAATAAACACATTCCCTTCATTATGATAAATGATATTGATGATTTTTTTTT
61 TCATGATTAGGAAGCCATAAACACATTCCCTTCATTAGGATAAATGATATTGAT-A--CTTTTGT
* * * **
3630132 TTTGCATGGAAATG-TTTTCTTTGCC-TTATTTTCTTGA-
123 TTCGCA-AGAAAAGCTTTTCTTT-CCACCA-TTT-TTGAT
* * * * * *
3630169 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCCTTTCAA
1 AAATCAAAGTT-TTCCCTTAAATAAGACAAACATCGATTCTCATAATAGTCTCCATTCCTTTCAT
* * * * ** * * **
3630234 GACTGGGAAGCCA-AAACACATTCTCTTCATTAGGATACATGGCATTGATGCTTTGGGGTCGCAA
65 GATTAGGAAGCCATAAACACATTCCCTTCATTAGGATAAATGATATTGATACTTTTGTTTCGCAA
* * *
3630298 AAAAAGCTTTTCTTTCCTCCGTTTTTGAT
130 GAAAAGCTTTTCTTTCCACCATTTTTGAT
* * * * * * *
3630327 AGAATCAAATTTTATCTCTTATATAAGACAAACAT-GAATGCACATACA-AATC-CCAATTCTTT
1 A-AATCAAAGTTT-TCCCTTAAATAAGACAAACATCG-ATTCTCATA-ATAGTCTCC-ATTCCTT
* * * * * ** * * *
3630389 TCTTGATTAGGCA-CCATAAACATAGT-CTTCTCATTAGGATACGTTATATTGATGCTTTGGATT
61 TCATGATTAGGAAGCCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATACTTTTG-TT
* * *
3630452 T-GCAAGAAATGCTTTT-TTCCCGCCAATTTTTG-T
124 TCGCAAGAAAAGCTTTTCTTTCCACC-ATTTTTGAT
* * * * * * * * * ** *
3630485 AAGGTCTAAGTTTGTGCCTCAAATGAGGCAAACATGGATTCT-AGTGAT-GAACTTGATTCATTT
1 AA-ATCAAAGTTT-TCCCTTAAATAAGACAAACATCGATTCTCA-TAATAG-TCTCCATTCCTTT
** * * * * ** * *
3630548 TGTGATTAAGCA-CTAGAAAGGCATTCTCCTT-ATTAGGATAAAAGATATTGATGA-TTTTTTTT
62 CATGATTAGGAAGCCATAAACACATTC-CCTTCATTAGGATAAATGATATTGAT-ACTTTTGTTT
* * * * * * *
3630610 TGCATGGAAATCTTATCTTTGCC-CTATTTTCCTTA-
125 CGCAAGAAAAGCTTTTCTTT-CCACCATTTT--TGAT
* ** * *
3630645 AAATCAAAATTCATT-CCTTAAATAAGACAGGCATCGATTCTCGTAATAGTCTCCATTTCTTTCA
1 AAATCAAAGTT--TTCCCTTAAATAAGACAAACATCGATTCTCATAATAGTCTCCATTCCTTTCA
* * ** ** * * *
3630709 AGATTGGGAAGCCA-AAACACATTCCCTTCATTAGGATACGTGGCATTGATGCTTTGGTGTCGCA
64 TGATTAGGAAGCCATAAACACATTCCCTTCATTAGGATAAATGATATTGATACTTTTGTTTCGCA
* * * * **
3630773 GGAAAAGCGTTCCTTTCTATTATTTTTGAT
129 AGAAAAGCTTTTCTTTCCACCATTTTTGAT
* * * * *
3630803 AGAATCAAAGTTTGCCTCTTATATAAGACAAACAT-GAATGCTCATACA-AATCCCCATT-CTTT
1 A-AATCAAAGTTTTCC-CTTAAATAAGACAAACATCG-ATTCTCATA-ATAGTCTCCATTCCTTT
* * ** * * *
3630865 CTTGATTAGGCA-CCAT-AA-ACATAGCCTTCTGATTAGAATAGACGATATTG--ACGTTTTAGT
62 CATGATTAGGAAGCCATAAACACATTCCCTTC--ATTAGGATAAATGATATTGATAC-TTTT-GT
* *
3630925 TAT-GCAAGAAAGGGATTTTC---CCACCAATTTTTG-T
123 T-TCGCAAGAAA-AGCTTTTCTTTCCACC-ATTTTTGAT
* * * * * * * *
3630959 AAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATAGATTCT-ACTGAT-GATCTTCATTCATTT
1 AAA-TCAAAGTTT-TCCCTTAAATAAGACAAACATCGATTCTCA-TAATAG-TCTCCATTCCTTT
** * * * * *
3631022 TGTGATTAGGCA-CTATAAACACATTCTCC-TCTTTAGGATAAATGGTATTGATGA-TTTTCTTT
62 CATGATTAGGAAGCCATAAACACATTC-CCTTCATTAGGATAAATGATATTGAT-ACTTTTGTTT
** * * * * ***
3631084 TACATGGAAATCTTTTCTTTGCC-CTATTTTCCTT
125 CGCAAGAAAAGCTTTTCTTT-CCACCATTTTTGAT
**
3631118 AAGATCAAAGTTCTTCCCTTAAATAAGACAGGCATCGATTCTCATAATAGTCTCCATTCCTTTCA
1 AA-ATCAAAGTT-TTCCCTTAAATAAGACAAACATCGATTCTCATAATAGTCTCCATTCCTTTCA
* * * * ** * *
3631183 AGA-TGGGAAGCCA-AAACACATTCCCTTTATTAGGATACATGGCATTGATACTTTGGTGTCGCA
64 TGATTAGGAAGCCATAAACACATTCCCTTCATTAGGATAAATGATATTGATACTTTTGTTTCGCA
3631246 AGAAAAGCTTTTCTTTCCACCATTTTTGAT
129 AGAAAAGCTTTTCTTTCCACCATTTTTGAT
* * * * * *
3631276 AGAATCAAAGTTTGCCTCTTATATAAGACAAACAT-TACTACTCATGCAA-A-TCCCCATT-TTT
1 A-AATCAAAGTTTTCC-CTTAAATAAGACAAACATCGA-TTCTCAT--AATAGTCTCCATTCCTT
* * * * * * * ** *
3631337 TTAGGATTAGGCA-CCATAGACATAAT-CTTCTCATTAGGATAAACCATATTGATGCTTTTGTTT
61 TCATGATTAGGAAGCCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATACTTTTGTTT
* * *
3631400 CGCAAGAAAGGCTTTT-TTCCCACCAATTATTG-T
125 CGCAAGAAAAGCTTTTCTTTCCACC-ATTTTTGAT
* * * * * * ** * * * *
3631433 AAAGTCTAAGGTTGCGCCTCAAATGAGACAAATATTAATTCT-AGTGAT-GATCTTCTTTCATTT
1 AAA-TCAAAGTTTTC-CCTTAAATAAGACAAACATCGATTCTCA-TAATAG-TCTCCATTCCTTT
** * * * * * *
3631496 TGTGATTACGCA-CTATAATCACATTCCCTTCATTAGGATAAATGATATTGATGA-TTTTTTTTT
62 CATGATTAGGAAGCCATAAACACATTCCCTTCATTAGGATAAATGATATTGAT-ACTTTTGTTTC
* * * **
3631559 GCATGGAAATCTTTTCTTTGCC-TTATTTTCTTGA-
126 GCAAGAAAAGCTTTTCTTT-CCACCA-TTT-TTGAT
* * ** * *
3631593 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAA
1 AAATCAAAGTT-TTCCCTTAAATAAGACAAACATCGATTCTCATAATAGTCTCCATTCCTTTCAT
* * * ** * *
3631658 GA-TGGGAAGCCA-AAACACAATCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAA
65 GATTAGGAAGCCATAAACACATTCCCTTCATTAGGATAAATGATATTGATACTTTTGTTTCGCAA
*
3631721 GAAAAGCTTTTCTTTGCACCATTTTTGAT
130 GAAAAGCTTTTCTTTCCACCATTTTTGAT
* * * * * * **
3631750 GGAATCAAAGTTTGCCTCTTATATAAGACAAACAT-TACTACTCATGCAA-A-TCCCCATTTTTT
1 -AAATCAAAGTTTTCC-CTTAAATAAGACAAACATCGA-TTCTCAT--AATAGTCTCCATTCCTT
* * * * * * * * ** *
3631812 TTAGGATTAGGCA-CCATAGACATAAT-CTTCTCGTTAGGATAAACCATATTGATGCTTTTGTTT
61 TCATGATTAGGAAGCCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATACTTTTGTTT
* * * *
3631875 TGCAAGAAAGGCTTTT-TTCCCACCAATTATTG-T
125 CGCAAGAAAAGCTTTTCTTTCCACC-ATTTTTGAT
* * * * * ** * * * * *
3631908 AAAGTCTATGTTTGCACCTCAAATGAGACAAACATTAATTCT-AGTGATGGTCTTCATTCATTTT
1 AAA-TCAAAGTTTTC-CCTTAAATAAGACAAACATCGATTCTCA-TAATAGTCTCCATTCCTTTC
* * * *
3631972 GTGATTAGGCA-CTATAAACACATTCCCTTCATTAGGATAAATGATGTTGATGA-TATTT-TTT-
63 ATGATTAGGAAGCCATAAACACATTCCCTTCATTAGGATAAATGATATTGAT-ACT-TTTGTTTC
* * * **
3632033 GCATGGAAATCTTTTCTTTGCC-TTATTTTCTTGA-
126 GCAAGAAAAGCTTTTCTTT-CCACCA-TTT-TTGAT
* * * ** * * *
3632067 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCAATTCTTGTAACAGTCTCCCTTCCTTTCAA
1 AAATCAAAGTT-TTCCCTTAAATAAGACAAACATCGATTCTCATAATAGTCTCCATTCCTTTCAT
* * * * * ** * *
3632132 GACTGGGAATCCA-AAACACGTTCCTTTCATTAGGATACAA-GGCATTGATGCTTTGGTGTT-GC
65 GATTAGGAAGCCATAAACACATTCCCTTCATTAGGATA-AATGATATTGATACTTTTGT-TTCGC
* * *
3632194 AGGAAAAGCTTTTCTTTCCTCCATTTTTTAT
128 AAGAAAAGCTTTTCTTTCCACCATTTTTGAT
* * * * * * * * * **
3632225 AGAAACAAAGTTTGTCTCTTATATAAGACACACAT-GAATACGCGTACA-AATCACCATTTTTTT
1 A-AATCAAAGTTT-TCCCTTAAATAAGACAAACATCG-ATTCTCATA-ATAGTCTCCATTCCTTT
* * * * * * * * *
3632288 CTTGATTAGGCA-CCATAAACATAGT-CTTCTCATTAGGATAGATTATATTGATGCTTTGGATTT
62 CATGATTAGGAAGCCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATACTTTTG-TTT
* *
3632351 -GCAAGAAATGCTTTT-TTCCCACCAATTTTTG-T
125 CGCAAGAAAAGCTTTTCTTTCCACC-ATTTTTGAT
** * * * * * * * * * ** *
3632383 ATGGTCTAAGTTTGTGCCTCAAGTGAGGA-ATACATGGATTCT-AGTGAT-GAACTTGATTCATT
1 A-AATCAAAGTTT-TCCCTTAAAT-AAGACAAACATCGATTCTCA-TAATAG-TCTCCATTCCTT
** * * * * * * * *
3632445 TTGTGATTAAGCA-CTAGAAAGACATTCTCC-TCAATAGGATAAATGATATTCATGA-TTTTCTT
61 TCATGATTAGGAAGCCATAAACACATTC-CCTTCATTAGGATAAATGATATTGAT-ACTTTTGTT
* ** * * * *
3632507 TTGCCTGGAAATCTTTTCTTTGCC-CTATTTTCCTTA-
124 TCGCAAGAAAAGCTTTTCTTT-CCACCATTTT--TGAT
* * * ** * *
3632543 AAATCAAAATTCATCCCTTAAATAAGATAGGCATCGATTCTCATAATAGTCTCAATTCCTTTCAA
1 AAATCAAAGTT-TTCCCTTAAATAAGACAAACATCGATTCTCATAATAGTCTCCATTCCTTTCAT
* * * ** * * * *
3632608 GATTGGGAAGCCA-AAACACATTCCATTCATTAGGATACATGGCATTGATGCTTTGGTGTCACAA
65 GATTAGGAAGCCATAAACACATTCCCTTCATTAGGATAAATGATATTGATACTTTTGTTTCGCAA
* *
3632672 GAAAAGCTTTCCTGTCCATCC-TTTTTGAT
130 GAAAAGCTTTTCTTTCCA-CCATTTTTGAT
* * * * * * * * *
3632701 AGAATCAAAGTTTGCCTCTTATATAAGGCAAACAT-GAATACTCACACA-AATCCCCATACTTTT
1 A-AATCAAAGTTTTCC-CTTAAATAAGACAAACATCG-ATTCTCATA-ATAGTCTCCATTCCTTT
* ** ** * * * *
3632764 CTTGATT-GGGCGCCATAAA-A-ATAGCCTTCGGATTATGATAGACGATATTGACA-TTTTAGCT
62 CATGATTAGGAAGCCATAAACACATTCCCTTC--ATTAGGATAAATGATATTGATACTTTT-G-T
* *
3632825 AT-GCAAGAAAGGCATTTTC---CCACCAATTTTTG-T
123 TTCGCAAGAAAAGC-TTTTCTTTCCACC-ATTTTTGAT
* * * * ** * * *
3632858 AAAGTCTAAGTTTGCGCCTCAAATGAGACAAACATTAATTCT-AGTGAT-GATCTTCATTCATTT
1 AAA-TCAAAGTTTTC-CCTTAAATAAGACAAACATCGATTCTCA-TAATAG-TCTCCATTCCTTT
** * * * *
3632921 TGTGATTAGGCA-CTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGA-TTTTTTTTT
62 CATGATTAGGAAGCCATAAACACATTCCCTTCATTAGGATAAATGATATTGAT-ACTTTTGTTTC
* * ** * *
3632984 GCATGGAAATG-TTTTCTTTGCC-TTATTTTCTTAA
126 GCA-AGAAAAGCTTTTCTTT-CCACCATTTT-TGAT
* * * * * *
3633018 AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCAATTCTCGTAACAGTCTCCATTCCTTTCAA
1 AAATCAAAGTT-TTCCCTTAAATAAGACAAACATCGATTCTCATAATAGTCTCCATTCCTTTCAT
* * * * ** * * *
3633083 GACTGGGAAGCCA-AAACACATTCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAA
65 GATTAGGAAGCCATAAACACATTCCCTTCATTAGGATAAATGATATTGATACTTTTGTTTCGCAA
* * *
3633147 AAAAAGCTTTTCTTTCCTCCGTTTTTGAT
130 GAAAAGCTTTTCTTTCCACCATTTTTGAT
* * ** * * * * * *
3633176 GGAATCAAAGTTTGTCTCTTATTTAAGACAAACAT-GAATACACGTACA-AATCGCCATTCTTTT
1 -AAATCAAAGTTT-TCCCTTAAATAAGACAAACATCG-ATTCTCATA-ATAGTCTCCATTCCTTT
* * * * * * * * *
3633239 CTTGATTAGGCA-CCATAAACATAGT-CTTCTCATTAGGATACATTATATTGATGCTTTGGATTT
62 CATGATTAGGAAGCCATAAACACATTCCCT-TCATTAGGATAAATGATATTGATACTTTTG-TTT
* * * *
3633302 -GCAAGAAATGCTTTT-TTCCCACCAAATTTTGTT
125 CGCAAGAAAAGCTTTTCTTTCCACC-ATTTTTGAT
*** * * * * * * * ** *
3633335 TGGTCTAAGTTTGTGCCTCAAATGAGGA-AAACATGGATTCT-AGAGAT-GAACTTGATTCATTT
1 AAATCAAAGTTT-TCCCTTAAAT-AAGACAAACATCGATTCTCATA-ATAG-TCTCCATTCCTTT
** * * * * * ** *
3633397 TGTGATTAAGCA-CTAGAAAGACATTCTCC-TCAACAGGATAAATGATATTGATGA-TTTTCTTT
62 CATGATTAGGAAGCCATAAACACATTC-CCTTCATTAGGATAAATGATATTGAT-ACTTTTGTTT
* ** * * * * *
3633459 TGCCTGGAAATCTTATCTTTTCC-CTATTTTCCTTA-
125 CGCAAGAAAAGCTTTTC-TTTCCACCATTTT--TGAT
* * * ** *
3633494 AAATCAAAATTCATCCCTTAAATAAGATAGGCATCGATTCTCATAATAGTCTCCATTCCTTTCAA
1 AAATCAAAGTT-TTCCCTTAAATAAGACAAACATCGATTCTCATAATAGTCTCCATTCCTTTCAT
* * ** * * *
3633559 GATTGGGAAGCCA-AAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAA
65 GATTAGGAAGCCATAAACACATTCCCTTCATTAGGATAAATGATATTGATACTTTTGTTTCGCAA
* *
3633623 GAAAAGCTTTCCTTTCCATCC-CTTTTGAT
130 GAAAAGCTTTTCTTTCCA-CCATTTTTGAT
* * * * * * *
3633652 AGAATCAAAGTTTGCCTCTTATATAAGACAAACAT-GAATACTCA-AACAAATCCCCATTCTTTT
1 A-AATCAAAGTTTTCC-CTTAAATAAGACAAACATCG-ATTCTCATAA-TAGTCTCCATTCCTTT
* * ** * * * *
3633715 CTTGATTAGGCA-CCAT-AA-ACATAGCCTTCTGATTAGGATAGACGATATTGATGCTTTAGTTA
62 CATGATTAGGAAGCCATAAACACATTCCCTTC--ATTAGGATAAATGATATTGATACTTTTGTT-
* *
3633777 T-GCAAGAAAGGCATTTTC---CCGCCAATTTTTG-T
124 TCGCAAGAAAAGC-TTTTCTTTCCACC-ATTTTTGAT
* * * * * * * *
3633809 AAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATAGATTCT-ACTGAT-GATCTTCATTCATTT
1 AAA-TCAAAGTTT-TCCCTTAAATAAGACAAACATCGATTCTCA-TAATAG-TCTCCATTCCTTT
** * * * * * *
3633872 TGTGATTAGGCA-CTATAAACACATTCTCC-TCTTTAGTATAAATGGTATTGATGA-TTTTCTTT
62 CATGATTAGGAAGCCATAAACACATTC-CCTTCATTAGGATAAATGATATTGAT-ACTTTTGTTT
** * * * * *
3633934 TACATGGAAATCTTTTCTTTACC-CTATTTTCCTTA-
125 CGCAAGAAAAGCTTTTCTTT-CCACCATTTT--TGAT
** *
3633969 AAATCAAAGTTCTTCCCTTAAATAAGACACGCATCGATTCTCATAACAGTCTCCATTCCTCTT-A
1 AAATCAAAGTT-TTCCCTTAAATAAGACAAACATCGATTCTCATAATAGTCTCCATTCCT-TTCA
* * * ** *
3634033 AGA-TGGGAAGCCA-AAACACATTCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTT-GC
64 TGATTAGGAAGCCATAAACACATTCCCTTCATTAGGATAAATGATATTGATACTTTTGT-TTCGC
3634095 AAGAAAAGCTTTTCTTTCCACCATTTTTGAT
128 AAGAAAAGCTTTTCTTTCCACCATTTTTGAT
* *
3634126 AGAATCAAAGTTTGTCTCTTATATAAGACAAACAT
1 A-AATCAAAGTTT-TCCCTTAAATAAGACAAACAT
3634161 TAGGATTAGG
Statistics
Matches: 3371, Mismatches: 1062, Indels: 697
0.66 0.21 0.14
Matches are distributed among these distances:
153 50 0.01
154 8 0.00
155 76 0.02
156 140 0.04
157 423 0.13
158 1182 0.35
159 1226 0.36
160 153 0.05
161 17 0.01
162 84 0.02
163 12 0.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (158 bp):
AAATCAAAGTTTTCCCTTAAATAAGACAAACATCGATTCTCATAATAGTCTCCATTCCTTTCATG
ATTAGGAAGCCATAAACACATTCCCTTCATTAGGATAAATGATATTGATACTTTTGTTTCGCAAG
AAAAGCTTTTCTTTCCACCATTTTTGAT
Found at i:3632178 original size:475 final size:472
Alignment explanation
Indices: 3629115--3636197 Score: 8845
Period size: 475 Copynumber: 15.0 Consensus size: 472
3629105 AGTTTGTGCC
* * *
3629115 TCATTCATTTTGTGATTAGGCACTATAAACACATTTTCC-TCCTTAGGATAAATGGTATTGATGA
1 TCATTCATTTTGTGATTAGGCACTATAAACACA-TTCCCTTCATTAGGATAAATGATATTGATGA
* * *
3629179 TTTTCTTTTACATAGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCTTCCCTTAAA
65 TTTT-TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAA
* * * *
3629244 TAAGACACGCATCGATTCTCATAATAGTCTCCACTCCTTTCAAGATGGGAAGCCAAAACACATTC
129 TAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTC
*
3629309 CCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTT
194 CCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTT
* * *
3629374 TTGATAGAATCAAAGTTTGCCTCTTATATAAG--AAACATTACTACTCATGCAAATCCCCATTTT
259 TTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATGAATACTCATACAAATCCCCATTTT
* * *
3629437 TTTTAGGATTAGGCACCATAGACAAAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTT
324 TTTT--GATTAGGCACCATAAACATAGTCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTT
* * * * *
3629502 CT-CAAGAAAAGCTTTTTT-CCACAAATTATTGTAAAGTCTAAGTTTGCACCTCAAATGGGACAA
387 -TGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAA
*
3629565 ACATTAATTCTAGTGATGATAT
451 ACATTAATTCTAGTGATGATCT
3629587 TCATTCA-TTT-TG--TAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGA-
* * *
3629648 TTTTTTTTGGATGAAAATCTTTTCTTTGCCTTATTTT-CTTGAAAATCAAAGTTCATCCCTTAAA
65 TTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTT-AAAATCAAAGTTCATCCCTTAAA
*
3629712 TAAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTC
129 TAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTC
** * *
3629777 CCTTCATTAGGGCACATGGCATTGATGCTTTGGTGTCTCAAGAAAAGCTTTTCTTTTCACCATTT
194 CCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTT
* * * * *
3629842 TTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATTACTACTCATGCAAATCCTCATTTT
259 TTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATGAATACTCATACAAATCCCCA-TTT
* *
3629907 TTTTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTT
323 TTTTT--GATTAGGCACCATAAACATAGTCTTCTCATTAGGATAAACCATATTGATGCTTTTGTT
* * *
3629972 TTGCAAGAAGGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACGA
386 TTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAA
* *
3630037 ACATTGATTCTAGTGATGATCC
451 ACATTAATTCTAGTGATGATCT
* * * *
3630059 TCATTCTTTTTGTGATTACGCACAATAAACACATTCCCTTCATTATGATAAATGATATTGATGAT
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGA-
* *
3630124 TTTTTTTTTTTGCATGGAAATGTTTTCTTTGCCTTATTTT-CTTGAAAATCAAAGTTCATCCCTT
65 ---TTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTT-AAAATCAAAGTTCATCCCTT
*
3630188 AAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCCTTTCAAGACTGGGAAGCCAAAACAC
126 AAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACAC
* * * *
3630253 ATTCTCTTCATTAGGATACATGGCATTGATGCTTTGGGGTCGCAAAAAAAGCTTTTCTTTCCTCC
190 ATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACC
* * ** * * *
3630318 GTTTTTGATAGAATCAAATTTTATCTCTTATATAAGACAAACATGAATGCACATACAAATCCCAA
255 ATTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATGAATACTCATACAAATCCCCA
**** *
3630383 TTCTTTTCTTGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACGTTATATTGATGCTTTG
320 TT-TTTT-TTGATTAGGCACCATAAACATAGTCTTCTCATTAGGATAAACCATATTGATGCTTTT
* * * * * *
3630448 GATTTGCAAGAAATGCTTTTTTCCCGCCAATTTTTGTAAGGTCTAAGTTTGTGCCTCAAATGAGG
383 GTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGCGCCTCAAATGAGA
** *
3630513 CAAACATGGATTCTAGTGATGAACT
448 CAAACATTAATTCTAGTGATGATCT
* * * ** *
3630538 TGATTCATTTTGTGATTAAGCACTAGAAAGGCATTCTCCTT-ATTAGGATAAAAGATATTGATGA
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCTTCATTAGGATAAATGATATTGATGA
* * *
3630602 TTTTTTTTTGCATGGAAATCTTATCTTTGCCCTATTTTCCTTAAAATCAAAATTCATTCCTTAAA
65 -TTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAA
* * *
3630667 TAAGACAGGCATCGATTCTCGTAATAGTCTCCATTTCTTTCAAGATTGGGAAGCCAAAACACATT
129 TAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACACATT
* * * * * **
3630732 CCCTTCATTAGGATACGTGGCATTGATGCTTTGGTGTCGCAGGAAAAGCGTTCCTTTCTATTATT
193 CCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATT
*
3630797 TTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATGAATGCTCATACAAATCCCCATTC
258 TTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATGAATACTCATACAAATCCCCATT-
* * * * * * *
3630862 TTTCTTGATTAGGCACCATAAACATAGCCTTCTGATTAGAATAGACGATATTGACG-TTTTAGTT
322 TTTTTTGATTAGGCACCATAAACATAGTCTTCTCATTAGGATAAACCATATTGATGCTTTT-GTT
* ** *
3630926 ATGCAAGAAAGG-GATTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAA
386 TTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAA
*
3630990 ACA-TAGATTCTACTGATGATCT
451 ACATTA-ATTCTAGTGATGATCT
* *
3631012 TCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC-TCTTTAGGATAAATGGTATTGATGA
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCTTCATTAGGATAAATGATATTGATGA
* * *
3631076 TTTTCTTTTACATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAGATCAAAGTTCTTCCCTTAAA
65 TTTT-TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAA
* * *
3631141 TAAGACAGGCATCGATTCTCATAATAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTC
129 TAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTC
* *
3631206 CCTTTATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTT
194 CCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTT
* * *
3631271 TTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTT
259 TTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATGAATACTCATACAAATCCCCATTTT
* * * *
3631336 TTTAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTC
324 TTT-TGATTAGGCACCATAAACATAGTCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTT
* * *
3631401 GCAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGGTTGCGCCTCAAATGAGACAAAT
388 GCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAAC
3631466 ATTAATTCTAGTGATGATCT
453 ATTAATTCTAGTGATGATCT
* * *
3631486 TCTTTCATTTTGTGATTACGCACTATAATCACATTCCCTTCATTAGGATAAATGATATTGATGAT
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGA-
*
3631551 TTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTT-CTTGAAAATCAAAGTTCATCCCTTAAA
65 TTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTT-AAAATCAAAGTTCATCCCTTAAA
* *
3631615 TAAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACAATC
129 TAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTC
* *
3631680 CCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTGCACCATTT
194 CCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTT
* * * *
3631745 TTGATGGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATTTT
259 TTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATGAATACTCATACAAATCCCCATTTT
* * *
3631810 TTTTAGGATTAGGCACCATAGACATAATCTTCTCGTTAGGATAAACCATATTGATGCTTTTGTTT
324 TTTT--GATTAGGCACCATAAACATAGTCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTT
* * *
3631875 TGCAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTATGTTTGCACCTCAAATGAGACAAA
387 TGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAA
*
3631940 CATTAATTCTAGTGATGGTCT
452 CATTAATTCTAGTGATGATCT
*
3631961 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATGTTGATGAT
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
* *
3632026 ATTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTT-CTTGAAAATCAAAGTTCATCCCTTAAAT
66 TTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTT-AAAATCAAAGTTCATCCCTTAAAT
* * * * *
3632090 AAGACAAGCATCAATTCTTGTAACAGTCTCCCTTCCTTTCAAGACTGGGAATCCAAAACACGTTC
130 AAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACACATTC
* * * * *
3632155 CTTTCATTAGGATACAAGGCATTGATGCTTTGGTGTTGCAGGAAAAGCTTTTCTTTCCTCCATTT
194 CCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTT
* * * * * * *
3632220 TTTATAGAAACAAAGTTTGTCTCTTATATAAGACACACATGAATACGCGTACAAATCACCATTTT
259 TTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATGAATACTCATACAAATCCCCA-TTT
* ** * *
3632285 TTTCTTGATTAGGCACCATAAACATAGTCTTCTCATTAGGATAGATTATATTGATGCTTTGGATT
323 TTT-TTGATTAGGCACCATAAACATAGTCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTT
* ** * * *
3632350 TGCAAGAAATGCTTTTTTCCCACCAATTTTTGTATGGTCTAAGTTTGTGCCTCAAGTGAGGA-AT
387 TGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGCGCCTCAAATGA-GACAA
** *
3632414 ACATGGATTCTAGTGATGAACT
451 ACATTAATTCTAGTGATGATCT
* * * * * *
3632436 TGATTCATTTTGTGATTAAGCACTAGAAAGACATTCTCC-TCAATAGGATAAATGATATTCATGA
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCTTCATTAGGATAAATGATATTGATGA
* *
3632500 TTTTCTTTTGCCTGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAA
65 TTTT-TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAA
* * * * *
3632565 TAAGATAGGCATCGATTCTCATAATAGTCTCAATTCCTTTCAAGATTGGGAAGCCAAAACACATT
129 TAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACACATT
* * * *
3632630 CCATTCATTAGGATACATGGCATTGATGCTTTGGTGTCACAAGAAAAGCTTTCCTGTCCATCC-T
193 CCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA-CCAT
* *
3632694 TTTTGATAGAATCAAAGTTTGCCTCTTATATAAGGCAAACATGAATACTCACACAAATCCCCATA
257 TTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATGAATACTCATACAAATCCCCAT-
* * * * * ** * * *
3632759 CTTTTCTTGATTGGGCGCCATAAAAATAGCCTTCGGATTATGATAGACGATATTGA--CATTTTA
321 -TTTTTTTGATTAGGCACCATAAACATAGTCTTCTCATTAGGATAAACCATATTGATGC-TTTT-
* * *
3632822 GCTATGCAAGAAAGGC-ATTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGCGCCTCAAATGAGA
383 GTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGCGCCTCAAATGAGA
3632886 CAAACATTAATTCTAGTGATGATCT
448 CAAACATTAATTCTAGTGATGATCT
3632911 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGA-
* *
3632976 TTTTTTTTGCATGGAAATGTTTTCTTTGCCTTATTTT-CTTAAAAATCAAAGTTCATCCCTTAAA
65 TTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTT-AAAATCAAAGTTCATCCCTTAAA
*
3633040 TAAGACAAGCATCAATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACATT
129 TAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACACATT
* * * *
3633105 CTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAAAAAAGCTTTTCTTTCCTCCGTT
193 CCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATT
* * * * * *
3633170 TTTGATGGAATCAAAGTTTGTCTCTTATTTAAGACAAACATGAATACACGTACAAATCGCCATTC
258 TTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATGAATACTCATACAAATCCCCATT-
* ** * *
3633235 TTTTCTTGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATTATATTGATGCTTTGGAT
322 TTTT-TTGATTAGGCACCATAAACATAGTCTTCTCATTAGGATAAACCATATTGATGCTTTTGTT
* * *** *
3633300 TTGCAAGAAATGCTTTTTTCCCACCAAATTTTGTTTGGTCTAAGTTTGTGCCTCAAATGAGGA-A
386 TTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGCGCCTCAAATGA-GACA
** * *
3633364 AACATGGATTCTAGAGATGAACT
450 AACATTAATTCTAGTGATGATCT
* * * * **
3633387 TGATTCATTTTGTGATTAAGCACTAGAAAGACATTCTCC-TCAACAGGATAAATGATATTGATGA
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCTTCATTAGGATAAATGATATTGATGA
* * * *
3633451 TTTTCTTTTGCCTGGAAATCTTATCTTTTCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAA
65 TTTT-TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAA
* * * *
3633516 TAAGATAGGCATCGATTCTCATAATAGTCTCCATTCCTTTCAAGATTGGGAAGCCAAAACACATT
129 TAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACACATT
* *
3633581 CCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTCCTTTCCATCC-C
193 CCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA-CCAT
*
3633645 TTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATGAATACTCAAACAAATCCCCATT
257 TTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATGAATACTCATACAAATCCCCATT
* * * * *
3633710 CTTTTCTTGATTAGGCACCATAAACATAGCCTTCTGATTAGGATAGACGATATTGATGCTTTAGT
322 -TTTT-TTGATTAGGCACCATAAACATAGTCTTCTCATTAGGATAAACCATATTGATGCTTTTGT
* * * *
3633775 TATGCAAGAAAGGC-ATTTTCCCGCCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACA
385 TTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACA
*
3633839 AACA-TAGATTCTACTGATGATCT
450 AACATTA-ATTCTAGTGATGATCT
* * *
3633862 TCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC-TCTTTAGTATAAATGGTATTGATGA
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCTTCATTAGGATAAATGATATTGATGA
* * *
3633926 TTTTCTTTTACATGGAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCTTCCCTTAAA
65 TTTT-TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAA
* *
3633991 TAAGACACGCATCGATTCTCATAACAGTCTCCATTCCTCTT-AAGATGGGAAGCCAAAACACATT
129 TAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCT-TTCAAGATGGGAAGCCAAAACACATT
* *
3634055 CCCTTCATTAGGATACATGGCATTGATACTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCATT
193 CCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATT
* * ** * ** * ***
3634120 TTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATTAGGA-TTAGGCACCATAGACATA
258 TTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATGAATACTCATACA-AATCCCCAT-
* * * * *
3634184 ATCTTCTCATTAGG----AT--A-A-A-----C-CA-T---AT---------TGATGTTTTTGTT
321 TTTTTTTGATTAGGCACCATAAACATAGTCTTCTCATTAGGATAAACCATATTGATGCTTTTGTT
* * * * *
3634222 TCGCAAGAAAGGCTTTTTTGCCACCAGTTATTGTAAAGTCTAAGTTTGCACCTCAAATGAGACAA
386 TTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAA
* *
3634287 ACATTGATTCTAGTGATTATCT
451 ACATTAATTCTAGTGATGATCT
*
3634309 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTAATTAGGATAAATGATATTGATGAT
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGA-
* * *
3634374 TTTTTTTTTGCATGGAACTCTTTTCTTTGCCTTATTTT-CTTGAAAATCAAAGTTCATCTCTTAA
65 -TTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTT-AAAATCAAAGTTCATCCCTTAA
* * *
3634438 ATAAGACAAGCATCGATTCTTGTAATAGCCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACAT
128 ATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACACAT
** * * * * * **
3634503 TTTCTTCTTTGGGATACATGGCAGTGATGCTTTGGTGTCGCAAAAAAAGCTTTTCTTTCCTCTGT
192 TCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCAT
* * *
3634568 TTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATGAATGCGCATACAAATCCCTATT
257 TTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATGAATACTCATACAAATCCCCATT
* ** * * *
3634633 CTTTTCTTGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATTATATTGTTGCTTTGGA
322 -TTTT-TTGATTAGGCACCATAAACATAGTCTTCTCATTAGGATAAACCATATTGATGCTTTTGT
* * * *
3634698 TTTGCAAGAAATGCTTTTTTTCCCACCAATTTTTGTAAGGTCTAAGTTTGTGCCTCAAACGAGAC
385 TTTGCAAGAAAGGC-TTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGCGCCTCAAATGAGAC
** *
3634763 AAACATGGATTCTAGTGATGAACT
449 AAACATTAATTCTAGTGATGATCT
* * *
3634787 TGATTCATTTTGTGATTAGGCACTAGAAAGACATTCTCC-TCGA-TAGGATAAATGATATTGATG
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCTTC-ATTAGGATAAATGATATTGATG
* *
3634850 ATTTTCTTTTGCATGGAAATCTTATCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAA
64 ATTTT-TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAA
* * *
3634915 ATAAGACAGGCATTGATTCTCGTAATAGTCTCCATTCCTTTCAAGATTGGGAAGCCAAAACACAT
128 ATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACACAT
* * * * ***
3634980 TCCCTTCATTAGGATACATGGCTTTGATGCTTTGGTGCCGCAAGAAAAGCTTTCCATTCTGTCAT
192 TCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCAT
* * * *
3635045 TTTTTATAGAATCAAAGTTTGTCC-CCTATATTAGACAAACATTAATACT-ATACAAATCCCCAT
257 TTTTGATAGAATCAAAGTTTG-CCTCTTATATAAGACAAACATGAATACTCATACAAATCCCCAT
* ** * * * **
3635108 TTTTTTCAGGAGCAGGCAACATAAACATATTC-TCGTCATTAGGATACATGATATTGATG-TTTT
321 TTTTTT--TGATTAGGCACCATAAACATAGTCTTC-TCATTAGGATAAACCATATTGATGCTTTT
* * * * *
3635171 GGTTTCGCAAAAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGTCTCAAATGAG
383 -GTTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGCGCCTCAAATGAG
* **
3635236 AAAAACATGGATTCTTA-TGATGATCT
447 ACAAACATTAATTC-TAGTGATGATCT
* * * * *
3635262 TCATTCATTTTTTGATTAGGCACCATAAACACAATCTCATCATTAGGATAAATGATATTGATGAT
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGA-
*
3635327 TTTTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTCTCCTTAAAATCAAAGTTCATCCCTTA
65 ---TTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTA
* *
3635392 AATAAGACAAGCATCGATTCTCGTAACAGTCTCAATTCCTTTCAAGACTGGGAAGCCAAATCACA
127 AATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACACA
* * * * * *
3635457 TTCTCTTCATTAGGATACATGGCATTAATGCTTTGGTGTCACAAGAAAAGCTTTCCTTGCGACCA
191 TTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCA
* * * * * * *
3635522 TTTTTGATAGAATCAAAGTTTGTCTCTTATACAAGACAACCTTGAATACTCGTACTAATCTCCAT
256 TTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATGAATACTCATACAAATCCCCAT
** * * * * * ** * *
3635587 TTTTTCCAAGAGTATGCAACATAGACATAGTCTTCTCCTTAGGATGCATCATATTGATGCTTTGG
321 TTTTT--TTGATTAGGCACCATAAACATAGTCTTCTCATTAGGATAAACCATATTGATGCTTTTG
* * * *
3635652 TTTTGTAGGAAAGGC-ATTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGAC
384 TTTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGCGCCTCAAATGAGAC
* ** * * *
3635716 AAGCATGGATTTTGGTGATGATTT
449 AAACATTAATTCTAGTGATGATCT
* *
3635740 TCATTCATTTTGTGATTAGGCACTATAAGCACATTCTCC-TCAATAGGATAAATGATATTGATGA
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCTTCATTAGGATAAATGATATTGATGA
** * *
3635804 TTTTCTTTTGCACAGAAATCTTATCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATCCCTTAAA
65 TTTT-TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAA
* * **
3635869 TAAGACACGCATCGATTCTCGTAATAGTCTCTGTTCCTTTCAAGACTGGGAAGCCAAAACACATT
129 TAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACACATT
* * * *
3635934 CCCTTCATTAGG-TCACATGGCTTTGATGCTTTGGGGTCGCAAGAAAAGCTTTTCTTTCTACCGT
193 CCCTTCATTAGGAT-ACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCAT
** * * * * *
3635998 TTTTGATAGAATCAAAGTTTTTCTTTTCTATAAGACAAACATGATTGCTCATACTAATCCCCATT
257 TTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATGAATACTCATACAAATCCCCATT
* * * * * ** * *
3636063 CTTTTCTAGATTAGGCACCATAAATATAGTCTTCTCAGTATGATACATGATATTGTTGCTTTAGT
322 -TTTT-TTGATTAGGCACCATAAACATAGTCTTCTCATTAGGATAAACCATATTGATGCTTTTGT
** * * *
3636128 TTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTATGTTTGTGCCTCAAATGAGACA
385 TTTGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACA
3636193 AACAT
450 AACAT
3636198 GGATGCTATA
Statistics
Matches: 5769, Mismatches: 709, Indels: 262
0.86 0.11 0.04
Matches are distributed among these distances:
446 24 0.00
447 123 0.02
448 88 0.02
449 125 0.02
450 10 0.00
454 2 0.00
455 2 0.00
456 1 0.00
457 1 0.00
458 2 0.00
459 1 0.00
460 1 0.00
463 1 0.00
464 2 0.00
465 2 0.00
466 1 0.00
467 8 0.00
468 243 0.04
469 6 0.00
470 29 0.01
471 85 0.01
472 77 0.01
473 217 0.04
474 840 0.15
475 1578 0.27
476 1100 0.19
477 246 0.04
478 452 0.08
479 359 0.06
480 141 0.02
481 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (472 bp):
TCATTCATTTTGTGATTAGGCACTATAAACACATTCCCTTCATTAGGATAAATGATATTGATGAT
TTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATA
AGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGATGGGAAGCCAAAACACATTCCC
TTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
GATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATGAATACTCATACAAATCCCCATTTTTT
TTGATTAGGCACCATAAACATAGTCTTCTCATTAGGATAAACCATATTGATGCTTTTGTTTTGCA
AGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGCGCCTCAAATGAGACAAACATT
AATTCTAGTGATGATCT
Found at i:3633216 original size:951 final size:952
Alignment explanation
Indices: 3629115--3637254 Score: 10246
Period size: 951 Copynumber: 8.6 Consensus size: 952
3629105 AGTTTGTGCC
* * *
3629115 TCATTCATTTTGTGATTAGGCACTATAAACACATTTTCCTCCTTAGGATAAATGGTATTGATGAT
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGAT
* * *
3629180 TTTCTTTTACATAGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCTTCCCTTAAAT
66 TTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAT
* * * *
3629245 AAGACACGCATCGATTCTCATAATAGTCTCCACTCCTTTCAAGA-TGGGAAGCCAAAACACATTC
131 AAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACATTC
* *
3629309 CCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTT
196 CCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCTCCATTT
* * * *
3629374 TTGATAGAATCAAAGTTTGCCTCTTATATAAG--AAACATTACTACTCATGCAAATCCCCATT-T
261 TTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATACTCATACAAATCCCCATTCT
* * * * * * *
3629436 TTTTTAGGATTAGGCACCATAGACAAAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTT
326 TTTCT-GGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTT
* * * * **
3629501 TCTCAAGAAAAGCTTTTTT-CCACAAATTATTGTAAAGTCTAAGTTTGCACCTCAAATG-GGACA
390 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGGA-A
** *
3629564 AACATTAATTCTAGTGATGATA-TTCATTCA-TTT-TG--TAGGCACTATAAACACATTC-CCTT
454 AACATGGATTCTAGTGATGA-ACTTCATTCATTTTGTGATTAAGCACTATAAACACATTCTCC-T
* * *
3629623 CATTAGGATAAATGATATTGATGATTTTTTTTTGGATGAAAATCTTTTCTTTGCCTTATTTT-CT
517 CATTAGGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCT
* *
3629687 TGAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTT
582 T-AAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCCTTT
** *
3629752 CAAGA-TGGGAAGCCAAAACACATTCCCTTCATTAGGGCACATGGCATTGATGCTTTGGTGTCTC
646 CAAGACTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGC
* * *
3629816 AAGAAAAGCTTTTCTTTTCACCATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACA
711 AAGAAAAGCTTTCCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACA
* * * * * * * *
3629881 TTACTACTCATGCAAATCCTCATT-TTTTTTTAGGATTAGGCACCATAGACATAATCTTCTCATT
776 TGAATACTCATACAAATCCCCATTCTTTTCTT--GATTAGGCACCATAAACATAGTCTTCTGATT
* * * * * *
3629945 AGGATAAACCATATTGATGCTTTT-GTTTTGCAAGAAGGGCTTTTTTCCCACCAATTATTGTAAA
839 AGGATAGACGATATTGACG-TTTTAGTTTTGCAAGAAAGGCTATTTTCCCACCAATTTTTGTAAA
* * * *
3630009 GTCTAAGTTTGCGCCTCAAATGAGACGAACATTGATTCTAGTGATGATCC
903 GTCTAAGTTTGTGCCTCAAATGAGACAAACATTAATTCTAGTGATGATCT
* * * *
3630059 TCATTCTTTTTGTGATTACGCACAATAAACACATTC-CCTTCATTATGATAAATGATATTGATGA
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC-TCATTAGGATAAATGATATTGATGA
* * *
3630123 TTTTTTTTTTTTGCATGGAAATGTTTTCTTTGCCTTATTTT-CTTGAAAATCAAAGTTCATCCCT
65 ---TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTT-AAAATCAAAGTTCATCCCT
*
3630187 TAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCCTTTCAAGACTGGGAAGCCAAAACA
126 TAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACA
* * *
3630252 CATTCTCTTCATTAGGATACATGGCATTGATGCTTTGGGGTCGCAAAAAAAGCTTTTCTTTCCTC
191 CATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCTC
* * * * * *
3630317 CGTTTTTGATAGAATCAAATTTTATCTCTTATATAAGACAAACATGAATGCACATACAAATCCCA
256 CATTTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATACTCATACAAATCCCC
* * *
3630382 ATTCTTTTCTTGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACGTTATATTGATGCTTT
321 ATTCTTTTCTGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTT
* * *
3630447 GGATTT-GCAAGAAATGCTTTTTTCCCGCCAATTTTTGTAAGGTCTAAGTTTGTGCCTCAAATGA
386 GG-TTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGA
* * * **
3630511 GGCAAACATGGATTCTAGTGATGAACTTGATTCATTTTGTGATTAAGCACTAGAAAGGCATTCTC
450 GGAAAACATGGATTCTAGTGATGAACTTCATTCATTTTGTGATTAAGCACTATAAACACATTCTC
* * *
3630576 CTTATTAGGATAAAAGATATTGATGATTTTTTTTTGCATGGAAATCTTATCTTTGCCCTATTTTC
515 CTCATTAGGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTC
* * * *
3630641 CTTAAAATCAAAATTCATTCCTTAAATAAGACAGGCATCGATTCTCGTAATAGTCTCCATTTCTT
580 CTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCCTT
* *
3630706 TCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACGTGGCATTGATGCTTTGGTGTCG
645 TCAAGACTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCG
* * * **
3630771 CAGGAAAAGCGTTCCTTTCTATTATTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAAC
710 CAAGAAAAGCTTTCCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAAC
* *
3630836 ATGAATGCTCATACAAATCCCCATTC-TTTCTTGATTAGGCACCATAAACATAGCCTTCTGATTA
775 ATGAATACTCATACAAATCCCCATTCTTTTCTTGATTAGGCACCATAAACATAGTCTTCTGATTA
* * *
3630900 GAATAGACGATATTGACGTTTTAGTTATGCAAGAAAGG-GATTTTCCCACCAATTTTTGTAAAGT
840 GGATAGACGATATTGACGTTTTAGTTTTGCAAGAAAGGCTATTTTCCCACCAATTTTTGTAAAGT
*
3630964 CTAAGTTTGTGCCTCAAATGAGACAAACA-TAGATTCTACTGATGATCT
905 CTAAGTTTGTGCCTCAAATGAGACAAACATTA-ATTCTAGTGATGATCT
* *
3631012 TCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCTTTAGGATAAATGGTATTGATGAT
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGAT
* * *
3631077 TTTCTTTTACATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAGATCAAAGTTCTTCCCTTAAAT
66 TTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAT
* * *
3631142 AAGACAGGCATCGATTCTCATAATAGTCTCCATTCCTTTCAAGA-TGGGAAGCCAAAACACATTC
131 AAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACATTC
* * *
3631206 CCTTTATTAGGATACATGGCATTGATACTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTT
196 CCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCTCCATTT
* * * *
3631271 TTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATTACTACTCATGCAAATCCCCATT-T
261 TTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATACTCATACAAATCCCCATTCT
* * * * *
3631335 TTT-TAGGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGCTTTTGTT
326 TTTCT-GGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTT
* * *
3631399 TCGCAAGAAAGGCTTTTTTCCCACCAATTATTGTAAAGTCTAAGGTTGCGCCTCAAATGA-GACA
390 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGGA-A
* ** * * * *
3631463 AATATTAATTCTAGTGATGATCTTCTTTCATTTTGTGATTACGCACTATAATCACATTC-CCTTC
454 AACATGGATTCTAGTGATGAACTTCATTCATTTTGTGATTAAGCACTATAAACACATTCTCC-TC
*
3631527 ATTAGGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCTTATTTT-CTT
518 ATTAGGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTT
* *
3631591 GAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTC
583 -AAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCCTTTC
* *
3631656 AAGA-TGGGAAGCCAAAACACAATCCCTTCATTAGGATACATGGCATTGATACTTTGGTGTCGCA
647 AAGACTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCA
* * *
3631720 AGAAAAGCTTTTCTTTGCACCATTTTTGATGGAATCAAAGTTTGCCTCTTATATAAGACAAACAT
712 AGAAAAGCTTTCCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACAT
* * * * *
3631785 TACTACTCATGCAAATCCCCATT-TTTT-TTAGGATTAGGCACCATAGACATAATCTTCTCG-TT
777 GAATACTCATACAAATCCCCATTCTTTTCTT--GATTAGGCACCATAAACATAGTCTTCT-GATT
* * * * *
3631847 AGGATAAACCATATTGATGCTTTT-GTTTTGCAAGAAAGGCTTTTTTCCCACCAATTATTGTAAA
839 AGGATAGACGATATTGACG-TTTTAGTTTTGCAAGAAAGGCTATTTTCCCACCAATTTTTGTAAA
* ** *
3631911 GTCTATGTTTGCACCTCAAATGAGACAAACATTAATTCTAGTGATGGTCT
903 GTCTAAGTTTGTGCCTCAAATGAGACAAACATTAATTCTAGTGATGATCT
*
3631961 TCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCTTCATTAGGATAAATGATGTTGATGA
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC-TCATTAGGATAAATGATATTGATGA
* *
3632025 TATT-TTTTGCATGGAAATCTTTTCTTTGCCTTATTTT-CTTGAAAATCAAAGTTCATCCCTTAA
65 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTT-AAAATCAAAGTTCATCCCTTAA
* * * * *
3632088 ATAAGACAAGCATCAATTCTTGTAACAGTCTCCCTTCCTTTCAAGACTGGGAATCCAAAACACGT
129 ATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACAT
* * * *
3632153 TCCTTTCATTAGGATACAAGGCATTGATGCTTTGGTGTTGCAGGAAAAGCTTTTCTTTCCTCCAT
194 TCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCTCCAT
* * * * * *
3632218 TTTTTATAGAAACAAAGTTTGTCTCTTATATAAGACACACATGAATACGCGTACAAATCACCATT
259 TTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATACTCATACAAATCCCCATT
* * * *
3632283 TTTTTCTTGATTAGGCACCATAAACATAGTCTTCTCATTAGGATAGATTATATTGATGCTTTGGA
324 CTTTTCTGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGG-
* ** *
3632348 TTT-GCAAGAAATGCTTTTTTCCCACCAATTTTTGTATGGTCTAAGTTTGTGCCTCAAGTGAGGA
388 TTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGGA
* * * *
3632412 ATACATGGATTCTAGTGATGAACTTGATTCATTTTGTGATTAAGCACTAGAAAGACATTCTCCTC
453 AAACATGGATTCTAGTGATGAACTTCATTCATTTTGTGATTAAGCACTATAAACACATTCTCCTC
* * * *
3632477 AATAGGATAAATGATATTCATGATTTTCTTTTGCCTGGAAATCTTTTCTTTGCCCTATTTTCCTT
518 ATTAGGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTT
* * * * *
3632542 AAAATCAAAATTCATCCCTTAAATAAGATAGGCATCGATTCTCATAATAGTCTCAATTCCTTTCA
583 AAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCCTTTCA
* * *
3632607 AGATTGGGAAGCCAAAACACATTCCATTCATTAGGATACATGGCATTGATGCTTTGGTGTCACAA
648 AGACTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAA
* *
3632672 GAAAAGCTTTCCTGTCCATCC-TTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGGCAAACAT
713 GAAAAGCTTTCCTTTCCA-CCATTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACAT
* * * * * * * *
3632736 GAATACTCACACAAATCCCCATACTTTTCTTGATTGGGCGCCATAAAAATAGCCTTCGGATTATG
777 GAATACTCATACAAATCCCCATTCTTTTCTTGATTAGGCACCATAAACATAGTCTTCTGATTAGG
* * *
3632801 ATAGACGATATTGACATTTTAGCTATGCAAGAAAGGC-ATTTTCCCACCAATTTTTGTAAAGTCT
842 ATAGACGATATTGACGTTTTAGTTTTGCAAGAAAGGCTATTTTCCCACCAATTTTTGTAAAGTCT
*
3632865 AAGTTTGCGCCTCAAATGAGACAAACATTAATTCTAGTGATGATCT
907 AAGTTTGTGCCTCAAATGAGACAAACATTAATTCTAGTGATGATCT
3632911 TCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCTTCATTAGGATAAATGATATTGATGA
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC-TCATTAGGATAAATGATATTGATGA
* * *
3632975 TTTTTTTTTGCATGGAAATGTTTTCTTTGCCTTATTTT-CTTAAAAATCAAAGTTCATCCCTTAA
65 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTT-AAAATCAAAGTTCATCCCTTAA
*
3633039 ATAAGACAAGCATCAATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACAT
129 ATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACAT
* * *
3633104 TCTCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAAAAAAGCTTTTCTTTCCTCCGT
194 TCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCTCCAT
* * * * *
3633169 TTTTGATGGAATCAAAGTTTGTCTCTTATTTAAGACAAACATGAATACACGTACAAATCGCCATT
259 TTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATACTCATACAAATCCCCATT
* *
3633234 CTTTTCTTGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATTATATTGATGCTTTGGA
324 CTTTTCTGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGG-
* * ***
3633299 TTT-GCAAGAAATGCTTTTTTCCCACCAAATTTTGTTTGGTCTAAGTTTGTGCCTCAAATGAGGA
388 TTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGGA
* * * *
3633363 AAACATGGATTCTAGAGATGAACTTGATTCATTTTGTGATTAAGCACTAGAAAGACATTCTCCTC
453 AAACATGGATTCTAGTGATGAACTTCATTCATTTTGTGATTAAGCACTATAAACACATTCTCCTC
** * * * *
3633428 AACAGGATAAATGATATTGATGATTTTCTTTTGCCTGGAAATCTTATCTTTTCCCTATTTTCCTT
518 ATTAGGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTT
* * * *
3633493 AAAATCAAAATTCATCCCTTAAATAAGATAGGCATCGATTCTCATAATAGTCTCCATTCCTTTCA
583 AAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCCTTTCA
*
3633558 AGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAA
648 AGACTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAA
*
3633623 GAAAAGCTTTCCTTTCCATCC-CTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACAT
713 GAAAAGCTTTCCTTTCCA-CCATTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACAT
* *
3633687 GAATACTCAAACAAATCCCCATTCTTTTCTTGATTAGGCACCATAAACATAGCCTTCTGATTAGG
777 GAATACTCATACAAATCCCCATTCTTTTCTTGATTAGGCACCATAAACATAGTCTTCTGATTAGG
* * * *
3633752 ATAGACGATATTGATGCTTTAGTTATGCAAGAAAGGC-ATTTTCCCGCCAATTTTTGTAAAGTCT
842 ATAGACGATATTGACGTTTTAGTTTTGCAAGAAAGGCTATTTTCCCACCAATTTTTGTAAAGTCT
*
3633816 AAGTTTGTGCCTCAAATGAGACAAACA-TAGATTCTACTGATGATCT
907 AAGTTTGTGCCTCAAATGAGACAAACATTA-ATTCTAGTGATGATCT
* * *
3633862 TCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCTTTAGTATAAATGGTATTGATGAT
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGAT
* * *
3633927 TTTCTTTTACATGGAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCTTCCCTTAAAT
66 TTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAT
* *
3633992 AAGACACGCATCGATTCTCATAACAGTCTCCATTCCTCTT-AAGA-TGGGAAGCCAAAACACATT
131 AAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCT-TTCAAGACTGGGAAGCCAAAACACATT
* * *
3634055 CCCTTCATTAGGATACATGGCATTGATACTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCATT
195 CCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCTCCATT
3634120 TTTGATAGAATCAAAGTTTGTCTCTTATATAAG----AC---AA-A--CAT-----T----A---
260 TTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATACTCATACAAATCCCCATTC
* * * * * *
3634163 ------GGATTAGGCACCATAGACATAATCTTCTCATTAGGATAAACCATATTGATGTTTTTGTT
325 TTTTCTGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTT
* * * **
3634222 TCGCAAGAAAGGCTTTTTTGCCACCAGTTATTGTAAAGTCTAAGTTTGCACCTCAAATGA-GACA
390 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGGA-A
* * * * *
3634286 AACATTGATTCTAGTGATTATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC-CCTTA
454 AACATGGATTCTAGTGATGAACTTCATTCATTTTGTGATTAAGCACTATAAACACATTCTCC-TC
* *
3634350 ATTAGGATAAATGATATTGATGATTTTTTTTTTGCATGGAACTCTTTTCTTTGCCTTATTTT-CT
518 ATTAGGATAAATGATATTGATGA-TTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCT
* * *
3634414 TGAAAATCAAAGTTCATCTCTTAAATAAGACAAGCATCGATTCTTGTAATAGCCTCCATTCCTTT
582 T-AAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCCTTT
** * * *
3634479 CAAGACTGGGAAGCCAAAACACATTTTCTTCTTTGGGATACATGGCAGTGATGCTTTGGTGTCGC
646 CAAGACTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGC
* * * **
3634544 AAAAAAAGCTTTTCTTTCCTCTGTTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACA
711 AAGAAAAGCTTTCCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACA
* * * *
3634609 TGAATGCGCATACAAATCCCTATTCTTTTCTTGATTAGGCACCATAAACATAGTCTTCTCATTAG
776 TGAATACTCATACAAATCCCCATTCTTTTCTTGATTAGGCACCATAAACATAGTCTTCTGATTAG
* ** ** * * * * * *
3634674 GATACATTATATTGTTGCTTTGGATTTGCAAGAAATGCTTTTTTTCCCACCAATTTTTGTAAGGT
841 GATAGACGATATTGACGTTTTAGTTTTGCAAGAAAGGC-TATTTTCCCACCAATTTTTGTAAAGT
* ** *
3634739 CTAAGTTTGTGCCTCAAACGAGACAAACATGGATTCTAGTGATGAACT
905 CTAAGTTTGTGCCTCAAATGAGACAAACATTAATTCTAGTGATGATCT
* * *
3634787 TGATTCATTTTGTGATTAGGCACTAGAAAGACATTCTCCTCGA-TAGGATAAATGATATTGATGA
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTC-ATTAGGATAAATGATATTGATGA
* *
3634851 TTTTCTTTTGCATGGAAATCTTATCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTAAA
65 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAA
* * * *
3634916 TAAGACAGGCATTGATTCTCGTAATAGTCTCCATTCCTTTCAAGATTGGGAAGCCAAAACACATT
130 TAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACATT
* * * * *
3634981 CCCTTCATTAGGATACATGGCTTTGATGCTTTGGTGCCGCAAGAAAAGCTTTCCATT-CTGTCAT
195 CCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCT-CCAT
* * * * *
3635045 TTTTTATAGAATCAAAGTTTGTCCCCTATATTAGACAAACATTAATACT-ATACAAATCCCCATT
259 TTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATACTCATACAAATCCCCATT
* * ** * * * *
3635109 TTTTTCAGGAGCAGGCAACATAAACATATTC-TCGTCATTAGGATACATGATATTGATGTTTTGG
324 CTTTTCTGGATTAGGCACCATAAACATAGTCTTC-TCATTAGGATACATCATATTGATGCTTTGG
* * * *
3635173 TTTCGCAAAAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGTCTCAAATGAGAA
388 TTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGGA
* * * * * *
3635238 AAACATGGATTCTTA-TGATGATCTTCATTCATTTTTTGATTAGGCACCATAAACACAATCTCAT
453 AAACATGGATTC-TAGTGATGAACTTCATTCATTTTGTGATTAAGCACTATAAACACATTCTCCT
*
3635302 CATTAGGATAAATGATATTGATGATTTTTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTCT
517 CATTAGGATAAATGATATTGATGA---TTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTT
* *
3635367 CCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCAATTCCT
579 CCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCCT
* * *
3635432 TTCAAGACTGGGAAGCCAAATCACATTCTCTTCATTAGGATACATGGCATTAATGCTTTGGTGTC
644 TTCAAGACTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTC
* * * * * *
3635497 ACAAGAAAAGCTTTCCTTGCGACCATTTTTGATAGAATCAAAGTTTGTCTCTTATACAAGACAAC
709 GCAAGAAAAGCTTTCCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAA
* * * * ** * * * * **
3635562 CTTGAATACTCGTACTAATCTCCATT-TTTTCCAAGAGTATGCAACATAGACATAGTCTTCTCCT
774 CATGAATACTCATACAAATCCCCATTCTTTT-CTTGATTAGGCACCATAAACATAGTCTTCTGAT
* * * * *
3635626 TAGGAT-GCATC-ATATTGATGCTTTGGTTTTGTAGGAAAGGC-ATTTTCCCACCAATTTTTGTA
838 TAGGATAG-A-CGATATTGACGTTTTAGTTTTGCAAGAAAGGCTATTTTCCCACCAATTTTTGTA
* ** * * *
3635688 AAGTCTAAGTTTGTGCCTCAAATGAGACAAGCATGGATTTTGGTGATGATTT
901 AAGTCTAAGTTTGTGCCTCAAATGAGACAAACATTAATTCTAGTGATGATCT
* *
3635740 TCATTCATTTTGTGATTAGGCACTATAAGCACATTCTCCTCAATAGGATAAATGATATTGATGAT
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGAT
** * *
3635805 TTTCTTTTGCACAGAAATCTTATCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATCCCTTAAAT
66 TTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAT
* * **
3635870 AAGACACGCATCGATTCTCGTAATAGTCTCTGTTCCTTTCAAGACTGGGAAGCCAAAACACATTC
131 AAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACATTC
* * *
3635935 CCTTCATTAGG-TCACATGGCTTTGATGCTTTGGGGTCGCAAGAAAAGCTTTTCTTT-CTACCGT
196 CCTTCATTAGGAT-ACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCT-CCAT
* * * * * *
3635998 TTTTGATAGAATCAAAGTTTTTCTTTTCTATAAGACAAACATGATTGCTCATACTAATCCCCATT
259 TTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATACTCATACAAATCCCCATT
* * * * * * *
3636063 CTTTTCTAGATTAGGCACCATAAATATAGTCTTCTCAGTATGATACATGATATTGTTGCTTTAGT
324 CTTTTCTGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGT
* * *
3636128 TTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTATGTTTGTGCCTCAAAT---G--
389 TTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGGAA
3636188 ---A--GA--C--------AA----A--CA---TG-GA-T--G--CTATAAACACATTCTCCTCA
454 AACATGGATTCTAGTGATGAACTTCATTCATTTTGTGATTAAGCACTATAAACACATTCTCCTCA
* * * * * *
3636223 TTAAGATAAATGAGATT-AGTAATTTTCTTTTACATGGAAATCTTTTCTTTGCCCTATTTCCCTT
519 TTAGGATAAATGATATTGA-TGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTT
* * * *
3636287 AAAATCAAGGCTCATCCCTTAAATAAGACAAGCTTCAATTCTCGTAATAGTCTCCATTCCTTTCA
583 AAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCCTTTCA
* ** * * * * * * *
3636352 AGACTAGGAAGCCAAGTCACATTTCCTTTATTAGGATAAATTGCATTAAGGCTTTGGTGTCTCAA
648 AGACTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAA
* * * * *
3636417 GAAAAGCTTTTCTTTCCACCGTTTTTGATAAAATCAAAGTTTGTCTCTTATATATGACAAACATG
713 GAAAAGCTTTCCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATG
* * ** *
3636482 AATACTCAAACTAATCCTAATTCTTTT-TAGGATTAGGCACCATAAACATAGTCTTCTGATTAGG
778 AATACTCATACAAATCCCCATTCTTTTCT-TGATTAGGCACCATAAACATAGTCTTCTGATTAGG
* ** * * * * * * * * *
3636546 ATACATTATATTAATGCTTTGGATTTGCAAGAAATGCTTTTTTCCTACCAATTTTT-AAAAGTCT
842 ATAGACGATATTGACGTTTTAGTTTTGCAAGAAAGGCTATTTTCCCACCAATTTTTGTAAAGTCT
** *
3636610 AAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTGATGATAT
907 AAGTTTGTGCCTCAAATGAGACAAACATTAATTCTAGTGATGATCT
* * *
3636656 TCATTCATTTTGTGATTAGGCATTAGAAACACATTCTCCTCATTAGGATAAATGATATTGGTGAT
1 TCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGAT
* * * *
3636721 TTTCATTTGCATGGAAATCTTTTCTTTGCCCTATTGTCCTTAAAAACAAAGTTCATCCCATAAAT
66 TTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAT
* * * *
3636786 AAGACAAGCATCGATTCTCGTAACAATCTCCATTCCTCTCAAGACTGGGAAGCCAAATCACATTT
131 AAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACATTC
* * * * * **
3636851 CCTTCACTAGGATAAATCGCATTGATGCTTTTGTGTCGCAA-AAAAGGCTCTTT-TTTCCACTGT
196 CCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAA-GCT-TTTCTTTCCTCCAT
* * * *
3636914 TTTGGATGGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATACTCATACTAATCCCTATT
259 TTTTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATACTCATACAAATCCCCATT
* * * * *
3636979 CTTTTCTAGATTAGGAACCATAAACGTAGTCTTCTCATTAGGATACATGATATTGATGTTTTGGT
324 CTTTTCTGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGT
* * * * *
3637044 TTTGTAAGAGAGGC-ATTTTCCCACCAATTTTTGTACAGTCTAAGTTTGTGCCTCAAATGA-GAT
389 TTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGGA-
* * * * * *** *
3637107 AAACTTGGAATCTAGTGATGATCTCCATTCATTCTACAATTAGGCACTATAAACACATTCTCCTC
453 AAACATGGATTCTAGTGATGAACTTCATTCATTTTGTGATTAAGCACTATAAACACATTCTCCTC
** **
3637172 ATTAGGATAAATGATATTGATG-TTTTTTTTTAAACT-GAAATCTTTTCTTTTTCCTATTTTCCT
518 ATTAGGATAAATGATATTGATGATTTTTTTTTGCA-TGGAAATCTTTTCTTTGCCCTATTTTCCT
3637235 TAAAATCAAAGTTCATCCCT
582 TAAAATCAAAGTTCATCCCT
3637255 GATGACAACC
Statistics
Matches: 6294, Mismatches: 743, Indels: 313
0.86 0.10 0.04
Matches are distributed among these distances:
915 44 0.01
916 671 0.11
917 26 0.00
918 1 0.00
919 34 0.01
921 8 0.00
922 175 0.03
923 295 0.05
924 4 0.00
925 223 0.04
926 103 0.02
927 1 0.00
928 2 0.00
930 3 0.00
931 1 0.00
933 2 0.00
934 2 0.00
935 4 0.00
939 1 0.00
940 3 0.00
941 2 0.00
942 2 0.00
943 4 0.00
944 58 0.01
945 1 0.00
946 9 0.00
947 244 0.04
948 532 0.08
949 442 0.07
950 745 0.12
951 1243 0.20
952 23 0.00
953 640 0.10
954 183 0.03
955 419 0.07
956 144 0.02
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (952 bp):
TCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGAT
TTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAT
AAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCAAGACTGGGAAGCCAAAACACATTC
CCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCTCCATTT
TTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATGAATACTCATACAAATCCCCATTCT
TTTCTGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTT
CGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGGAAAA
CATGGATTCTAGTGATGAACTTCATTCATTTTGTGATTAAGCACTATAAACACATTCTCCTCATT
AGGATAAATGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAA
ATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCCTTTCAAGA
CTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGGCATTGATGCTTTGGTGTCGCAAGAA
AAGCTTTCCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTATATAAGACAAACATGAAT
ACTCATACAAATCCCCATTCTTTTCTTGATTAGGCACCATAAACATAGTCTTCTGATTAGGATAG
ACGATATTGACGTTTTAGTTTTGCAAGAAAGGCTATTTTCCCACCAATTTTTGTAAAGTCTAAGT
TTGTGCCTCAAATGAGACAAACATTAATTCTAGTGATGATCT
Found at i:3637097 original size:475 final size:474
Alignment explanation
Indices: 3636207--3637253 Score: 1424
Period size: 475 Copynumber: 2.2 Consensus size: 474
3636197 TGGATGCTAT
* * * *
3636207 AAACACATTCTCCTCATTAAGATAAATGAGATTAGTAATTTTCTTTTACATGGAAATCTTTTCTT
1 AAACACATTCTCCTCATTAGGATAAATGATATTGGTGATTTTCTTTTACATGGAAATCTTTTCTT
* * * * * *
3636272 TGCCCTATTTCCCTTAAAATCAAGGCTCATCCCTTAAATAAGACAAGCTTCAATTCTCGTAATAG
66 TGCCCTATTT-CCTTAAAATCAAAGTTCATCCCATAAATAAGACAAGCATCAATTCTCGTAACAA
* * * * *
3636337 TCTCCATTCCTTTCAAGACTAGGAAGCCAAGTCACATTTCCTTTATTAGGATAAATTGCATTAAG
130 TCTCCATTCCTCTCAAGACTAGGAAGCCAAATCACATTTCCTTCACTAGGATAAATCGCATTAAG
* *
3636402 GCTTTGGTGTCTCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAAAATCAAAGTTTGTCTCTTA
195 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTGGATAAAATCAAAGTTTGTCTCTTA
* *
3636467 TATATGACAAACATGAATACTCAAACTAATCCTAATTCTTTTTAGGATTAGGCACCATAAACATA
260 TATAAGACAAACATGAATACTCAAACTAATCCTAATTCTTTTTAGGATTAGGAACCATAAACATA
* * * * *
3636532 GTCTTCTGATTAGGATACATTATATTAATGCTTTGGATTTGCAAGAAATGCTTTTTTCCTACCAA
325 GTCTTCTCATTAGGATACATGATATTAATGCTTTGGATTTGCAAGAAAGGCTATTTTCCCACCAA
* *
3636597 TTTTTAAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTGATGATATTCATTC
390 TTTTTAAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGAATCTAGTGATGATATCCATTC
* *** *
3636662 ATTTTGTGATTAGGCATTAG
455 ATTCTACAATTAGGCACTAG
* *
3636682 AAACACATTCTCCTCATTAGGATAAATGATATTGGTGATTTTCATTTGCATGGAAATCTTTTCTT
1 AAACACATTCTCCTCATTAGGATAAATGATATTGGTGATTTTCTTTTACATGGAAATCTTTTCTT
* *
3636747 TGCCCTATTGTCCTTAAAAACAAAGTTCATCCCATAAATAAGACAAGCATCGATTCTCGTAACAA
66 TGCCCTATT-TCCTTAAAATCAAAGTTCATCCCATAAATAAGACAAGCATCAATTCTCGTAACAA
* * *
3636812 TCTCCATTCCTCTCAAGACTGGGAAGCCAAATCACATTTCCTTCACTAGGATAAATCGCATTGAT
130 TCTCCATTCCTCTCAAGACTAGGAAGCCAAATCACATTTCCTTCACTAGGATAAATCGCATTAAG
* * **
3636877 GCTTTTGTGTCGCAA-AAAAGGCTCTTT-TTTCCACTGTTTTGGATGGAATCAAAGTTTGTCTCT
195 GCTTTGGTGTCGCAAGAAAA-GCT-TTTCTTTCCACCGTTTTGGATAAAATCAAAGTTTGTCTCT
*
3636940 TATATAAGACAAACATGAATACTCATACTAATCCCT-ATTCTTTTCTA-GATTAGGAACCATAAA
258 TATATAAGACAAACATGAATACTCAAACTAAT-CCTAATTCTTTT-TAGGATTAGGAACCATAAA
* * * * * *
3637003 CGTAGTCTTCTCATTAGGATACATGATATTGATGTTTTGGTTTTGTAAGAGAGGC-ATTTTCCCA
321 CATAGTCTTCTCATTAGGATACATGATATTAATGCTTTGGATTTGCAAGAAAGGCTATTTTCCCA
* * * * *
3637067 CCAATTTTTGTACAGTCTAAGTTTGTGCCTCAAATGAGATAAACTTGGAATCTAGTGATGATCTC
386 CCAATTTTT-AAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGAATCTAGTGATGATATC
*
3637132 CATTCATTCTACAATTAGGCACTAT
450 CATTCATTCTACAATTAGGCACTAG
* * *
3637157 AAACACATTCTCCTCATTAGGATAAATGATATTGATG-TTTTTTTTTAAACT-GAAATCTTTTCT
1 AAACACATTCTCCTCATTAGGATAAATGATATTGGTGATTTTCTTTTACA-TGGAAATCTTTTCT
**
3637220 TTTTCCTATTTTCCTTAAAATCAAAGTTCATCCC
65 TTGCCCTA-TTTCCTTAAAATCAAAGTTCATCCC
3637254 TGATGACAAC
Statistics
Matches: 501, Mismatches: 63, Indels: 17
0.86 0.11 0.03
Matches are distributed among these distances:
474 68 0.14
475 424 0.85
476 9 0.02
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.37
Consensus pattern (474 bp):
AAACACATTCTCCTCATTAGGATAAATGATATTGGTGATTTTCTTTTACATGGAAATCTTTTCTT
TGCCCTATTTCCTTAAAATCAAAGTTCATCCCATAAATAAGACAAGCATCAATTCTCGTAACAAT
CTCCATTCCTCTCAAGACTAGGAAGCCAAATCACATTTCCTTCACTAGGATAAATCGCATTAAGG
CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTGGATAAAATCAAAGTTTGTCTCTTAT
ATAAGACAAACATGAATACTCAAACTAATCCTAATTCTTTTTAGGATTAGGAACCATAAACATAG
TCTTCTCATTAGGATACATGATATTAATGCTTTGGATTTGCAAGAAAGGCTATTTTCCCACCAAT
TTTTAAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGAATCTAGTGATGATATCCATTCA
TTCTACAATTAGGCACTAG
Found at i:3643075 original size:32 final size:32
Alignment explanation
Indices: 3643034--3644151 Score: 1427
Period size: 32 Copynumber: 36.2 Consensus size: 32
3643024 GGTGCCACTA
* * * **
3643034 ACTTATGTGGGCCTTGAAAAGAATTGCCACCG
1 ACTTGTGTGGGCTTTGAAATGGGTTGCCACCG
*
3643066 ACTCGTGTGGGCTTTGAAATGGGTTGCCACCG
1 ACTTGTGTGGGCTTTGAAATGGGTTGCCACCG
* *
3643098 ACTTGTGTGGGCTTTAAAAAGGGTTGCCACCG
1 ACTTGTGTGGGCTTTGAAATGGGTTGCCACCG
*
3643130 ACATGTGTGGGCTTTGAAATGGGTTGCCACCG
1 ACTTGTGTGGGCTTTGAAATGGGTTGCCACCG
**
3643162 ACTTGTGTGGGCTTTGGCATGGGTTGCCACCG
1 ACTTGTGTGGGCTTTGAAATGGGTTGCCACCG
*
3643194 ACTTGTGTGGGCTTTGAAA-GGG-TGCCACTG
1 ACTTGTGTGGGCTTTGAAATGGGTTGCCACCG
* **
3643224 AC-T-TGTGGGCTTTCAAA-GGG-TGCCACTA
1 ACTTGTGTGGGCTTTGAAATGGGTTGCCACCG
*
3643252 AC-T-TGTGGGCTTTGAAA-GGG-TGCCACTG
1 ACTTGTGTGGGCTTTGAAATGGGTTGCCACCG
3643280 AC-T-TGTGGGCTTTGAAA-GGG-TGCCACCG
1 ACTTGTGTGGGCTTTGAAATGGGTTGCCACCG
* * *
3643308 ACTTATGTGGGCTTTTAAA-GGG-TGCCACTG
1 ACTTGTGTGGGCTTTGAAATGGGTTGCCACCG
3643338 AC-T-TGTGGGCTTTGAAATGGGTTGCCACCG
1 ACTTGTGTGGGCTTTGAAATGGGTTGCCACCG
* * *
3643368 ACTTGTGTGGGCTTTCAAATGAGTTGCCACCA
1 ACTTGTGTGGGCTTTGAAATGGGTTGCCACCG
*
3643400 ACTTGTGTGGGCTTTGAAATGGGTTGCCACCA
1 ACTTGTGTGGGCTTTGAAATGGGTTGCCACCG
* **
3643432 ACTTGTGTGGGCTTTCAAATGGGTTGCCACTA
1 ACTTGTGTGGGCTTTGAAATGGGTTGCCACCG
*
3643464 ACTTGTGTGGGCTTTGAAATAGGTTGCCACCG
1 ACTTGTGTGGGCTTTGAAATGGGTTGCCACCG
3643496 ACTTGTGTGGGCTTTGAAATGGGTTGCCACCG
1 ACTTGTGTGGGCTTTGAAATGGGTTGCCACCG
* *
3643528 ACTTGTGTGGGCTTTGAAATGGGTTGCAACCA
1 ACTTGTGTGGGCTTTGAAATGGGTTGCCACCG
* * *
3643560 ACTTGTGTGGGCTTTCAAATGAGTTGCCACCA
1 ACTTGTGTGGGCTTTGAAATGGGTTGCCACCG
*
3643592 ACTTGTGTGGGCTTTGAAATGGGTTGCCACCA
1 ACTTGTGTGGGCTTTGAAATGGGTTGCCACCG
* *
3643624 ACTTATGTGGGCTTTGAAATGAGTTGCCACCG
1 ACTTGTGTGGGCTTTGAAATGGGTTGCCACCG
* *
3643656 ACTTGTGTGGGCTTTCAAAT-GG-TGCCACTG
1 ACTTGTGTGGGCTTTGAAATGGGTTGCCACCG
*
3643686 AC-T-TGTGGGCTTTGAAAT-GG-TGCCACTG
1 ACTTGTGTGGGCTTTGAAATGGGTTGCCACCG
* **
3643714 AC-T-TGTGGGCTTTCAAA-GGG-TGCCACTA
1 ACTTGTGTGGGCTTTGAAATGGGTTGCCACCG
* **
3643742 AC-T-TATGGGCTTTGAAA-GGG-TGCCACTA
1 ACTTGTGTGGGCTTTGAAATGGGTTGCCACCG
3643770 AC-T-TGTGGGCTTTGAAA-GGG-TGCCACCG
1 ACTTGTGTGGGCTTTGAAATGGGTTGCCACCG
* * *
3643798 ACTTATGTGGGCTTTTAAA-GGG-TGCCACTG
1 ACTTGTGTGGGCTTTGAAATGGGTTGCCACCG
3643828 AC-T-TGTGGGCTTTGAAATGGGTTGCCACCG
1 ACTTGTGTGGGCTTTGAAATGGGTTGCCACCG
* * *
3643858 ACTTGTGTGGGCTTTCAAATGAGTTGCCACCA
1 ACTTGTGTGGGCTTTGAAATGGGTTGCCACCG
* * *
3643890 ACTTGTGTGGGCTTTCAAATGAGTTGCCACCA
1 ACTTGTGTGGGCTTTGAAATGGGTTGCCACCG
3643922 ACTTGTGTGGGCTTTGAAATGGGTTGCCACCG
1 ACTTGTGTGGGCTTTGAAATGGGTTGCCACCG
*
3643954 ACTTGTGTGGGCTTTGGAATGGGTTGCCACCG
1 ACTTGTGTGGGCTTTGAAATGGGTTGCCACCG
3643986 ACTTGTGTGGGCTTTGAAATGGGTTGCCACCG
1 ACTTGTGTGGGCTTTGAAATGGGTTGCCACCG
3644018 ACTTGTGTGGGCTTTGAAATGGGTTGCCACCG
1 ACTTGTGTGGGCTTTGAAATGGGTTGCCACCG
*
3644050 ACTTGTGTGGGCTTTGGAATGGGTTGCCACCG
1 ACTTGTGTGGGCTTTGAAATGGGTTGCCACCG
*
3644082 ACTTGTGTGGGCTTTGGAATGGGTTGCCACCG
1 ACTTGTGTGGGCTTTGAAATGGGTTGCCACCG
*
3644114 ACTTGTGTGGGCTTTGAAATGGG-TGCCACAG
1 ACTTGTGTGGGCTTTGAAATGGGTTGCCACCG
*
3644145 AGTTGTG
1 ACTTGTG
3644152 GATTTAAAAG
Statistics
Matches: 996, Mismatches: 77, Indels: 27
0.91 0.07 0.02
Matches are distributed among these distances:
28 206 0.21
29 12 0.01
30 86 0.09
31 19 0.02
32 673 0.68
ACGTcount: A:0.18, C:0.19, G:0.32, T:0.30
Consensus pattern (32 bp):
ACTTGTGTGGGCTTTGAAATGGGTTGCCACCG
Found at i:3644169 original size:27 final size:27
Alignment explanation
Indices: 3644134--3644788 Score: 1006
Period size: 27 Copynumber: 24.0 Consensus size: 27
3644124 GCTTTGAAAT
* *
3644134 GGGTGCCACAGAGTTGTGGATTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
** *
3644161 GGACGCCACAGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
3644188 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* *
3644215 GGGTGCCACAGAGTTGTGGACTAAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
3644242 GGGTGCCACGGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAA
*
3644270 GGGTGCCACAGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* *
3644297 GAGATGCCACGGAGTTATGGACTTAAAA
1 G-GGTGCCACGGAGTTGTGGACTTAAAA
*
3644325 GGGTTCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* * *
3644352 GGGTGCCACGGAGTTATGGTCTGAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
3644379 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* *
3644406 GGGTGCCACAGAGTTGTGGACTAAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
3644433 GGGTGCCACGGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAA
*
3644461 GGGTGCCACAGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* *
3644488 GAGATGCCACGGAGTTATGGACTTAAAA
1 G-GGTGCCACGGAGTTGTGGACTTAAAA
3644516 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* *
3644543 GGGTGCCACAGAGTTGTGGTCTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
3644570 GGGATGCCACGGAGTTGTGGACTTAAAA
1 GGG-TGCCACGGAGTTGTGGACTTAAAA
3644598 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
3644625 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
3644652 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* *
3644679 -GGTGCCACAGAGTTGTGGACTAAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
3644705 GGGTGCCACGGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAA
*
3644733 GGGTGCCACAGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* *
3644760 GGATGCCACAGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAA
3644788 G
1 G
3644789 AAAATGCCAC
Statistics
Matches: 576, Mismatches: 44, Indels: 15
0.91 0.07 0.02
Matches are distributed among these distances:
26 24 0.04
27 397 0.69
28 155 0.27
ACGTcount: A:0.29, C:0.15, G:0.34, T:0.22
Consensus pattern (27 bp):
GGGTGCCACGGAGTTGTGGACTTAAAA
Found at i:3644468 original size:191 final size:191
Alignment explanation
Indices: 3644134--3644788 Score: 1100
Period size: 191 Copynumber: 3.4 Consensus size: 191
3644124 GCTTTGAAAT
* * **
3644134 GGGTGCCACAGAGTTGTGGATTTAAAAGGACGCCACAGAGTTGTGGACTTAAAAGGGTGCCACGG
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACAGAGTTGTGGACTTAAAAGGGTGCCACGG
3644199 AGTTGTGGACTTAAAAGGGTGCCACAGAGTTGTGGACTAAAAAGGGTGCCACGGAGTTGTGGACT
66 AGTTGTGGACTTAAAAGGGTGCCACAGAGTTGTGGACTAAAAAGGGTGCCACGGAGTTGTGGACT
3644264 TTAAAAGGGTGCCACAGAGTTGTGGACTTAAAAGAGATGCCACGGAGTTATGGACTTAAAA
131 TTAAAAGGGTGCCACAGAGTTGTGGACTTAAAAGAGATGCCACGGAGTTATGGACTTAAAA
* * * * *
3644325 GGGTTCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTATGGTCTGAAAAGGGTGCCACGG
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACAGAGTTGTGGACTTAAAAGGGTGCCACGG
3644390 AGTTGTGGACTTAAAAGGGTGCCACAGAGTTGTGGACTAAAAAGGGTGCCACGGAGTTGTGGACT
66 AGTTGTGGACTTAAAAGGGTGCCACAGAGTTGTGGACTAAAAAGGGTGCCACGGAGTTGTGGACT
3644455 TTAAAAGGGTGCCACAGAGTTGTGGACTTAAAAGAGATGCCACGGAGTTATGGACTTAAAA
131 TTAAAAGGGTGCCACAGAGTTGTGGACTTAAAAGAGATGCCACGGAGTTATGGACTTAAAA
*
3644516 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACAGAGTTGTGGTCTTAAAAGGGATGCCACG
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACAGAGTTGTGGACTTAAAAGGG-TGCCACG
* *
3644581 GAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC
65 GAGTTGTGGACTTAAAAGGGTGCCACAGAGTTGTGGACTAAAAAGGGTGCCACGGAGTTGTGGAC
* * * *
3644646 -TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAG-G-TGCCACAGAGTTGTGGACTAAAAA
130 TTTAAAAGGGTGCCACAGAGTTGTGGACTTAAAAGAGATGCCACGGAGTTATGGACTTAAAA
* *
3644705 GGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACAGAGTTGTGGACTTAAAAGGATGCCACA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAAGGGTGCCACAGAGTTGTGGACTTAAAAGGGTGCCACG
3644770 GAGTTGTGGACTTTAAAAG
65 GAGTTGTGGAC-TTAAAAG
3644789 AAAATGCCAC
Statistics
Matches: 439, Mismatches: 22, Indels: 7
0.94 0.05 0.01
Matches are distributed among these distances:
189 59 0.13
190 42 0.10
191 268 0.61
192 70 0.16
ACGTcount: A:0.29, C:0.15, G:0.34, T:0.22
Consensus pattern (191 bp):
GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACAGAGTTGTGGACTTAAAAGGGTGCCACGG
AGTTGTGGACTTAAAAGGGTGCCACAGAGTTGTGGACTAAAAAGGGTGCCACGGAGTTGTGGACT
TTAAAAGGGTGCCACAGAGTTGTGGACTTAAAAGAGATGCCACGGAGTTATGGACTTAAAA
Found at i:3656526 original size:42 final size:42
Alignment explanation
Indices: 3656471--3656589 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
3656461 TTCTTCTCTC
* *
3656471 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
3656513 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
3656555 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
3656590 TTGAGTGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:3656530 original size:12 final size:11
Alignment explanation
Indices: 3656504--3656579 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
3656494 TCTATTATCT
*
3656504 CTCCTGTCTCTC
1 CTCCTATCTC-C
3656516 CTCCTATCATCC
1 CTCCTATC-TCC
3656528 CTCCTATCT--
1 CTCCTATCTCC
*
3656537 CTACTATCT--
1 CTCCTATCTCC
*
3656546 CTCCTGTCTCTC
1 CTCCTATCTC-C
3656558 CTCCTATCATCC
1 CTCCTATC-TCC
*
3656570 CTCCTCTCTC
1 CTCCTATCTC
3656580 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:3656531 original size:24 final size:24
Alignment explanation
Indices: 3656495--3656580 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
3656485 CCTCCTCTCT
* *
3656495 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
3656519 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
3656540 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
3656561 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
3656581 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:3656555 original size:18 final size:18
Alignment explanation
Indices: 3656486--3656556 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
3656476 CCTGTCATCC
* *
3656486 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
3656504 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
3656526 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
3656546 CTCCTGTCTCT
1 CTCCTGTCTCT
3656557 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:3659120 original size:476 final size:475
Alignment explanation
Indices: 3658223--3660586 Score: 2765
Period size: 476 Copynumber: 5.0 Consensus size: 475
3658213 AATAATGAGG
* * * * * *
3658223 ATGAGAAGACTATGTTTATCGTACCTAATCCTAAAAAGAATGAGGATTAGAATGCGTATTCAAGT
1 ATGAGAAGACTATGTTTATGGTGCCTAATCCTTAAAAGAATGGGGATTAGAATGAGTATTCAGGT
* * * * * * * * * **
3658288 AACTCTTATTTG-AGAGACAAACTTTGATTTTATAAAAAACGGTGAAAAAAAAAGCTTTTCCTTT
66 TAGTCTTA-TTGAAGAGACAAACTTTGGTTCTATCAAAAATGATGGAAATAAAAGCTTTTCCTAC
* * * * * * * * * *
3658352 GACCCCAAATCATCATTATCATGTAACCTAATGAATGAAAAGTATTTTTTGTTCCC-AATCTTGA
130 GACACCATAGCATCAATGTCATGTATCCTAATGAAAG-AATGT-GTTTTTGGTCCCTAATCTTGA
* * * * * * ** * * * *
3658416 AAAGAATGGAGACTAGTACGATAATAGGTGCTTGTCTTATTTAAGGAACGAACTTTCATTTTAGG
193 AAAGAAAGGAGACTATTACGAGAATCGATGCTGGTCTTGCTTAAGGGATGAACTTTGATTTTAAG
* * * * * * * * *
3658481 GAAAGTAGGGCACAGAAAAGATTTCCATGCAATAA-AAAATCACCATTATCATTTAACCTAACGA
258 CAAAATAGGGTAGAGAAAAGATTTCCAAGCAA-AAGAAAATCATCAATATCATTTATCCTAATGA
* * * * * * *
3658545 GGAGAATATGTTTATAGTGCCTAATCACAATATGAATGAAGATCATTTCTCGAATCCATATTTTT
322 GGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAACCCATGTTTGT
* * * * ** * *
3658610 CT-AGTTTAAGGTATGGACTTAGGCTTTACAAAAATTGGTTGGAAAAAAGCTTTTGTTGTGAAAC
387 CTCA-TTTGAGGCACGAACTTAGATTTTACAAAAATTGGTTGGAAAAAAGCATTTCTTGTGAAAC
*
3658674 CAAAGCCTCAATATGATGTATCCTA
451 CAAAGCATCAATATGATGTATCCTA
*
3658699 ATGAAAAGACTATGTTTATGGTGCCTAATCCTTAAAAGAATGGGGATTAGAATGAGTATTCAGGT
1 ATGAGAAGACTATGTTTATGGTGCCTAATCCTTAAAAGAATGGGGATTAGAATGAGTATTCAGGT
*
3658764 TAGTCTTATTGAAGAGACAAACCTTGGTTCTATCAAAAATGATGGAAATAAAAGCTTTTCCTACG
66 TAGTCTTATTGAAGAGACAAACTTTGGTTCTATCAAAAATGATGGAAATAAAAGCTTTTCCTACG
* *
3658829 ACACCGTAGCATCAATGCCATGTATCCTAATGAACAGAATGTGTTTTTGGTCCCTAATCTTGAAA
131 ACACCATAGCATCAATGTCATGTATCCTAATGAA-AGAATGTGTTTTTGGTCCCTAATCTTGAAA
*
3658894 AGAAAGGAGACTATTATGAGAATCGATGCTGGTCTTGCTTAAGGGATGAACTTTGATTTTAAGCA
195 AGAAAGGAGACTATTACGAGAATCGATGCTGGTCTTGCTTAAGGGATGAACTTTGATTTTAAGCA
* * *
3658959 AAATAGAGTAGAGAAAAAATTTTCAAGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGA
260 AAATAGGGTAGAGAAAAGATTTCCAAGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGA
* * * * *
3659024 GAATGTGTTTATAGTGCCTAATCACAAAATAAAAGATGATTATTATTAGAACCCATGTTTGTCTC
325 GAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAACCCATGTTTGTCTC
* * * *
3659089 ATTTGAGGCACAAACTTAGATTTTACAAAAATTGGTTGGAAAAAAGC-CTT-TTG-AAAACGAAA
390 ATTTGAGGCACGAACTTAGATTTTACAAAAATTGGTTGGAAAAAAGCATTTCTTGTGAAACCAAA
* * *
3659151 GCATTAATATGATATATCTTA
455 GCATCAATATGATGTATCCTA
* * ** * * * * * *
3659172 GTGCGAAGACTACATTTACGGTGCCTAAT-ATTGAAAAGAATTGGGATTGGTATTAGTATTCAGG
1 ATGAGAAGACTATGTTTATGGTGCCTAATCCTT-AAAAGAATGGGGATTAGAATGAGTATTCAGG
* * * * * * * *
3659236 TTTA-TTTTATTCAAAAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAGGCTTTTCCTG
65 -TTAGTCTTATTGAAGAGACAAACTTTGGTTCTATCAAAAATGATGGAAATAAAAGCTTTTCCTA
* * * * * *
3659300 TGACACCAAAGCATCAATGTGATGTATACTAATGAAAGGAAAGTGTTTTTGGT-TCTCAATCTTG
129 CGACACCATAGCATCAATGTCATGTATCCTAATGAAA-GAATGTGTTTTTGGTCCCT-AATCTTG
* * * * * ** *
3659364 AAAAGAATGAAGATTGTTACAAGAATCGATGCTGGTCTTATTTAAGGGATGAACTTCGATTTTAA
192 AAAAGAAAGGAGACTATTACGAGAATCGATGCTGGTCTTGCTTAAGGGATGAACTTTGATTTTAA
* * * *
3659429 GCAAAATAAGGTAGAGAAAAGATTTACAAGCAAAAGAAAATCTTCAATATCATTTATCCTAAAGA
257 GCAAAATAGGGTAGAGAAAAGATTTCCAAGCAAAAGAAAATCATCAATATCATTTATCCTAATGA
* * *
3659494 GGAGAGTGTGTTCATAGTGCCTAATCACAAAATGAATGAAGATCATTACAAGAACCCATGTTTGT
322 GGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAACCCATGTTTGT
*
3659559 CTCATTTGAGTCACGAACTTAGATTTTACAAAAATTGGTTGGAAAAAAGCATTTCTTGTGAAACC
387 CTCATTTGAGGCACGAACTTAGATTTTACAAAAATTGGTTGGAAAAAAGCATTTCTTGTGAAACC
* *
3659624 AAAGCAACAGTATGATGTATCCTA
452 AAAGCATCAATATGATGTATCCTA
* * *
3659648 AAGAGAAGACTATGGTTATGGTGCCTAAT-CTTGAAAAGTATGGGGATTAGAATGAGTATTCAGG
1 ATGAGAAGACTATGTTTATGGTGCCTAATCCTT-AAAAGAATGGGGATTAGAATGAGTATTCAGG
* * * *
3659712 TTAGTCTTATTTAAGAGACAAACTTTAGTGCTATCAAAAATGATGGAAATAAAAGCTTTTCTTAC
65 TTAGTCTTATTGAAGAGACAAACTTTGGTTCTATCAAAAATGATGGAAATAAAAGCTTTTCCTAC
* * * * *
3659777 GACACCGTAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGCTTCATAATCTTGAA
130 GACACCATAGCATCAATGTCATGTATCCTAATGAA-AGAATGTGTTTTTGGTCCCTAATCTTGAA
* * * *
3659842 AAGAAAAGAGACTGTTACGAGAACCGATGCTGGTCTTGCTCAAGGGATGAACTTTGATTTTAAGC
194 AAGAAAGGAGACTATTACGAGAATCGATGCTGGTCTTGCTTAAGGGATGAACTTTGATTTTAAGC
* * * * *
3659907 AAAACAGGGTGGAGAAAAGATTTCCAAGCAAAAAAAAATCATCAATATCGTTTATCCTAATCAGG
259 AAAATAGGGTAGAGAAAAGATTTCCAAGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGG
* * * * *
3659972 AGAATATGTTTATAGTGCCTAATCACAAAATGAATAAAGATAATTACAAGAACCCGTGTTTGTCT
324 AGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAACCCATGTTTGTCT
* * * * *
3660037 CATTTGAGGCAGGAACTTAGATTTCACAAACATTGGTTGGAAAATAGAATTTCTTGTGAAACCAA
389 CATTTGAGGCACGAACTTAGATTTTACAAAAATTGGTTGGAAAAAAGCATTTCTTGTGAAACCAA
*
3660102 AGCAACAATATGATGTATCCTA
454 AGCATCAATATGATGTATCCTA
* * * *
3660124 ATGAGAAGACAATGTTTATGGTGCCTAATCCTGAAAGGAATGGGGATTAGAATAAGTATTCAGGT
1 ATGAGAAGACTATGTTTATGGTGCCTAATCCTTAAAAGAATGGGGATTAGAATGAGTATTCAGGT
* * * * **
3660189 TAGTCTTATTTAAGAGATAAACTTT-GTTTTATTAAAACCGATGGAAATAAAAGCTTTTCCTACG
66 TAGTCTTATTGAAGAGACAAACTTTGGTTCTATCAAAAATGATGGAAATAAAAGCTTTTCCTACG
* *
3660253 ACACCATAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCTAATCTTGAAA
131 ACACCATAGCATCAATGTCATGTATCCTAATGAA-AGAATGTGTTTTTGGTCCCTAATCTTGAAA
* * * * *
3660318 AGAAAGGAGACTATAATGAGAATAGATACTGGTCTTGCTTAAGGGATGAATTTTGATTTTAAGCA
195 AGAAAGGAGACTATTACGAGAATCGATGCTGGTCTTGCTTAAGGGATGAACTTTGATTTTAAGCA
* * * * * *
3660383 AAATAGGGTAGAGAAAAGCTTTCTAAGAAAAAGAAAATCATCAGTATCGTTTATCCTAATAAGGA
260 AAATAGGGTAGAGAAAAGATTTCCAAGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGA
* * * * *
3660448 GAATGTGTTTATAGTGCCTAATCACAAAATGATTGAGGATCTTTACTATAACCCATGTTTTTCTC
325 GAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAACCCATGTTTGTCTC
* * * * * * * *
3660513 ATTTGAGCCACGGACTTAGATATTATAAAAATTGGTTCGAAAAAAGCTTTTGTTG-CAACACCAA
390 ATTTGAGGCACGAACTTAGATTTTACAAAAATTGGTTGGAAAAAAGCATTTCTTGTGAA-ACCAA
3660577 AGCATCAATA
454 AGCATCAATA
3660587 CTGAAAAGAA
Statistics
Matches: 1604, Mismatches: 267, Indels: 35
0.84 0.14 0.02
Matches are distributed among these distances:
472 5 0.00
473 396 0.25
474 10 0.01
475 343 0.21
476 845 0.53
477 5 0.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (475 bp):
ATGAGAAGACTATGTTTATGGTGCCTAATCCTTAAAAGAATGGGGATTAGAATGAGTATTCAGGT
TAGTCTTATTGAAGAGACAAACTTTGGTTCTATCAAAAATGATGGAAATAAAAGCTTTTCCTACG
ACACCATAGCATCAATGTCATGTATCCTAATGAAAGAATGTGTTTTTGGTCCCTAATCTTGAAAA
GAAAGGAGACTATTACGAGAATCGATGCTGGTCTTGCTTAAGGGATGAACTTTGATTTTAAGCAA
AATAGGGTAGAGAAAAGATTTCCAAGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAG
AATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAACCCATGTTTGTCTCA
TTTGAGGCACGAACTTAGATTTTACAAAAATTGGTTGGAAAAAAGCATTTCTTGTGAAACCAAAG
CATCAATATGATGTATCCTA
Found at i:3663798 original size:159 final size:158
Alignment explanation
Indices: 3661751--3665384 Score: 676
Period size: 159 Copynumber: 23.0 Consensus size: 158
3661741 TAAAAAAAAT
* * * * *
3661751 CATCAACATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGTCTAATC-ACAAAATGAATGAA
1 CATCAATATCATGTATCCTAATAAGGAGAATGTGTTTATGGTGCCTAATCTAGAAAA-GAATGAA
* ** * * * * *
3661815 GATCATTACT-AAAATCCATGTTTGTCTCATTTGAGGCACGAAC-TTGCACTTT-AAAAATATTA
65 GATCATTACTGAGAATCCATACTTGTCTTATTTAAGG-ACGAACTTTG-ATTTTGCAAAA-ATTG
* *
3661877 G-TAGGAGAAATA-CCTTTCTTGCGAAACCAAAA
127 GTTA-GA-AAAAAGCCTTTCTTGCGAAACCAAAG
* * * * * * * * **
3661909 CATTAATATCGTGTATCCCAATGAGAAGACTATGTTTATGGCGCCTAATCCTA-AAAAGAATGGG
1 CATCAATATCATGTATCCTAATAAGGAGAATGTGTTTATGGTGCCTAAT-CTAGAAAAGAATGAA
* * ** * * * * * *
3661973 GATTA-GAAAGAGTAT-CAAATTTGTCTTATTTGAAGGACAAATTTTGATTCTAT-CAAAAA-CG
65 GATCATTACTGAGAATCCATACTTGTCTTATTT-AAGGACGAACTTTGATT-T-TGCAAAAATTG
*** * * *
3662034 ACGAAAAGAAAAGCTTTTCTTGCGACACCAAAG
127 GTTAGAA-AAAAGCCTTTCTTGCGAAACCAAAG
* * * * * * * * * *
3662067 CATCAATGTTATGTATCCTAATGAAAG-GAATGTGTTTTTGGTTCCCAATTTTGAAAAGAGTGGA
1 CATCAATATCATGTATCCTAAT-AAGGAGAATGTGTTTATGGTGCCTAATCTAGAAAAGAATGAA
* ** * * * ** * *
3662131 GA-CTGTTAC-GAGAA-AAAGTGCTTGCCTTATTTAAGGAATGAACTTTGATTTTAGGGAAAGTA
65 GATC-ATTACTGAGAATCCA-TACTTGTCTTATTTAAGG-ACGAACTTTGATTTT-GCAAAAATT
** * * * ** *
3662193 GGGCAAAAAAAAG-ATTTCGATGC-AATAAAAAAT
126 GGTTAGAAAAAAGCCTTTC-TTGCGAA-ACCAAAG
* * * * * * * *
3662226 CATCATTATCTTATATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATC-ACAAGATGAATGAA
1 CATCAATATCATGTATCCTAATAAGGAGAATGTGTTTATGGTGCCTAATCTAGAA-AAGAATGAA
* * ** * * * * *
3662290 CATCATTTCT-AGAATCCATGTTTGTCTCATTTAAGGTATGAACTTGGACTTTACAAAAATTGGT
65 GATCATTACTGAGAATCCATACTTGTCTTATTTAAGG-ACGAACTTTGATTTTGCAAAAATTGGT
* * *
3662354 TAGGCAAAAA-CCTTTGTTGCGAAAGCAAAG
129 TA-GAAAAAAGCCTTTCTTGCGAAACCAAAG
* ** * * * * * *
3662384 CTTCAATAAGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAA-AA-AAAG
1 CATCAATATCATGTATCCTAATAAGGAGAATGTGTTTATGGTGCCTAATCTAGAAAAGAATGAA-
* * * * * ** * *
3662447 GATTA-AAATGAGTATTCA-GGTTAGTCTTA-TTAAGAGACAAACTTTGATTATAT-TAAAAA-T
65 GATCATTACTGAGAATCCATACTT-GTCTTATTTAAG-GACGAACTTTGATT-T-TGCAAAAATT
* * * ** * *
3662507 AGTGAAAATAAAAGTTTTTCTTGCGACACCATAG
126 GGTTAGAA-AAAAGCCTTTCTTGCGAAACCAAAG
* * * * * * * *
3662541 AATCAATGTCATGTATCCTAACGAATG-GAATGTGTTTTTGGTTCCTAATCTTGAGAAGAAT-AG
1 CATCAATATCATGTATCCTAA-TAAGGAGAATGTGTTTATGGTGCCTAATCTAGAAAAGAATGA-
* * * * *
3662604 AGA-CTATTA-TGAGAATCGATGCTGGTATTATTTAAGGGATGAACTTTGATTTT--AAGTAAAC
64 AGATC-ATTACTGAGAATCCATACTTGTCTTATTTAA-GGACGAACTTTGATTTTGCAA--AAA-
* * * * * * ** *
3662665 TAGGGTAGAGAAAAG-ATTTCCTAGCAAAAGAAAAT
124 TTGGTTAGAAAAAAGCCTTT-CTTGCGAAACCAAAG
* ** *
3662700 CATCAATATCATTTATCCTAATAAGG-GAAATGTGTTTATTATGCCTAATC-ACAAAATGAATGA
1 CATCAATATCATGTATCCTAATAAGGAG-AATGTGTTTATGGTGCCTAATCTAGAAAA-GAATGA
* ** ** * * * * *
3662763 TGATCATTACT-AGAGCCCATGTTTGTCTCATTTAAGGCACGAACTTAGGTTTCGCAAAAATTGA
64 AGATCATTACTGAGAATCCATACTTGTCTTATTTAAGG-ACGAACTTTGATTTTGCAAAAATTGG
*
3662827 TT-GGAAAAAG-CTTT-TTG-GAAACCAAAG
128 TTAGAAAAAAGCCTTTCTTGCGAAACCAAAG
* * * * * * * **
3662854 CATCAATATGATTTATCCTAATGAGAAGACTATGTTTTTGGTGCCTAATACT-GAAAAGAATGGG
1 CATCAATATCATGTATCCTAATAAGGAGAATGTGTTTATGGTGCCTAAT-CTAGAAAAGAATGAA
* * * ** * * * *
3662918 GATTAGTA-TGAGTAT-TTTAAGTTTATCTTATTCAAGAGACAAACTTTGATTCTATG-AAAAAT
65 GATCATTACTGAGAATCCAT-A-CTTGTCTTATTTAAG-GACGAACTTTGATT-T-TGCAAAAAT
** * *
3662980 AGTGG--A-AAAAAAGGTTTTCTTGTGACACCAAAG
125 --TGGTTAGAAAAAAGCCTTTCTTGCGAAACCAAAG
* * * *
3663013 CATCATTGTCATGTATCCTAA-AGAGGGGAA------TAT--T-CCTAATCTTGAAAAGAATGGA
1 CATCAATATCATGTATCCTAATA-AGGAGAATGTGTTTATGGTGCCTAATCTAGAAAAGAAT-GA
* * * * **
3663068 A-A-CTGTTAC-GAGAATCGATGCTAGTCTTATTTAAGGGTTGAACTTTGATTTTAAGC-AAAAT
64 AGATC-ATTACTGAGAATCCATACTTGTCTTATTTAA-GGACGAACTTTGATTTT--GCAAAAAT
* * * * * ** * ** *
3663129 AAGG-CAGAGAAGAG-ATTTCCAAG-AAAATGAAAAT
125 -TGGTTAGAAAAAAGCCTTT-CTTGCGAAA-CCAAAG
* ** * *
3663163 CATCAGTATCAT-TATCCTAATAAGGAGAATGCATTTATAGTGCCTAATC-ACAAAATGAATGAA
1 CATCAATATCATGTATCCTAATAAGGAGAATGTGTTTATGGTGCCTAATCTAGAAAA-GAATGAA
* * ** * * * * * *
3663226 GATCATTA-TTAGAACCCATGTTTGTCTCATTTGAGGCAAGAACTTGGACTTTAC-AAAATTGGT
65 GATCATTACTGAGAATCCATACTTGTCTTATTTAAGG-ACGAACTTTGATTTTGCAAAAATTGGT
* * *
3663289 TGGAAAAAAGCCTTTCTTGCAAAACCAAAA
129 TAGAAAAAAGCCTTTCTTGCGAAACCAAAG
* * * * * * * *
3663319 CATGAATATGATGTATCCTAATGA-GAAAACTATGTTTATGGTGCCCAATCTTGAAAATAAT-AA
1 CATCAATATCATGTATCCTAATAAGGAGAA-TGTGTTTATGGTGCCTAATCTAGAAAAGAATGAA
** * * * *** * * * *
3663382 G--GGTTAGTGTAAGTATTCAGGTTTATCTTAGTTAAGAGACAAACTTTGATTCTAT-CAAACA-
65 GATCATTACTG--AGAATCCATACTTGTCTTATTTAAG-GACGAACTTTGATT-T-TGCAAAAAT
* * * *
3663443 CGG-TGGAAAGAAATGCTTTTTCTGTGC---A-TAAAG
125 TGGTTAGAAA-AAA-GC-CTTTCT-TGCGAAACCAAAG
* * * * * * * *
3663476 CATCAATGTCACGTATCTTAAAGAAGG-GAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGA
1 CATCAATATCATGTATCCT-AATAAGGAGAATGTGTTTATGGTGCCTAATCTAGAAAAGAATGAA
* * * * *
3663540 GA-CTATTA-TGAGAAT-CAAAGCTTGTCTTATTTAAAGTATGAACTTTGATTTAAAG-GAAAAT
65 GATC-ATTACTGAGAATCCATA-CTTGTCTTATTT-AAGGACGAACTTTGATTT--TGCAAAAAT
* ** * ** * * ** *
3663601 AGGGCAGAGAAAAGATTTTCATGCTAAAAAAAAT
125 TGGTTAGAAAAAAGCCTTTCTTGCGAAACCAAAG
* * *
3663635 CATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAAT-TAGAAAATGATTGAA
1 CATCAATATCATGTATCCTAATAAGGAGAATGTGTTTATGGTGCCTAATCTAGAAAA-GAATGAA
* * * *
3663699 AATCATTACT-AGAACCCATATTTGTCTCT-TTTGAGGCACGAACTTTGATTTTGCAAAAATTGG
65 GATCATTACTGAGAATCCATACTTGTCT-TATTTAAGG-ACGAACTTTGATTTTGCAAAAATTGG
3663762 TTAGAAAAAAAGCCTTTCTTGCGAAACCAAAG
128 TTAG-AAAAAAGCCTTTCTTGCGAAACCAAAG
* * * * * * * *
3663794 CATCAATATTATATATTCTAA-AGAGAAGACTATGTTTATGGTACCTAATCCT-GAAAAGAATGG
1 CATCAATATCATGTATCCTAATA-AGGAGAATGTGTTTATGGTGCCTAAT-CTAGAAAAGAATGA
* * * * * * * * * *
3663857 GGATTA-GAATGAGTATTCATATTTGTCTTACTTAAGAGACAAACTTTGATTCTAT-CAAAAA-C
64 AGATCATTACTGAGAATCCATACTTGTCTTATTTAAG-GACGAACTTTGATT-T-TGCAAAAATT
* ** *
3663919 GG-TAGAAAAAAAAGCTTTTCTTATGACACCAAAG
126 GGTTAG--AAAAAAGCCTTTCTTGCGAAACCAAAG
* * * * * * * * *
3663953 CATCAATGTCATGTATCTTAATAATGGAAACATGT-TTT-GGGTTCCCAATCTTGAAAAGAACGG
1 CATCAATATCATGTATCCTAATAA-GGAGA-ATGTGTTTATGGTGCCTAATCTAGAAAAGAATGA
* * * * *
3664016 AGA-CGGTTA-TGAGAATCGATACTAGTCTTATTTAAAAGATGAACTTTGATTTTAAGC-AAAAT
64 AGATC-ATTACTGAGAATCCATACTTGTCTTATTT-AAGGACGAACTTTGATTTT--GCAAAAAT
** * * ** * ** *
3664078 TGGGCAGAGAAAAG-ATTTCCAAGCAAAAGAAAAT
125 TGGTTAGAAAAAAGCCTTT-CTTGCGAAACCAAAG
* * * * *
3664112 CATCAATATCATCTATCCTAATAAGGAGAATGTGTTTATAGCGCCTAATC-ACAAAATGATTGAA
1 CATCAATATCATGTATCCTAATAAGGAGAATGTGTTTATGGTGCCTAATCTAGAAAA-GAATGAA
* * * * * *
3664176 GACCATTACT-AGAAACCATGCTTGTCTCATTTGAGGTACGAACTTGGATTTTGCAAAAATTGGT
65 GATCATTACTGAGAATCCATACTTGTCTTATTTAAGG-ACGAACTTTGATTTTGCAAAAATTGGT
* *
3664240 TAGAAAAAA-CCTTTCTTGTGAAACCAAAT
129 TAGAAAAAAGCCTTTCTTGCGAAACCAAAG
* * * * * * * **
3664269 CATCAATATGATGTATCCTACTGAGAAGACTATGTTTATGGTGCCTAATCTTA-AAAGGAATGGG
1 CATCAATATCATGTATCCTAATAAGGAGAATGTGTTTATGGTGCCTAATC-TAGAAAAGAATGAA
* * * * * * * * *
3664333 GATTA-GAATAAGTATTCAT-GTTAGTCTTATTTAAGAGACAAACTTTGATTCTAT-C-AAAATC
65 GATCATTACTGAGAATCCATACTT-GTCTTATTTAAG-GACGAACTTTGATT-T-TGCAAAAATT
* *
3664394 GG-TGGAAAGAAAAGCTTTTCTTGC-AACACCAAAG
126 GGTTAG-AA-AAAAGCCTTTCTTGCGAA-ACCAAAG
* * * * * * * * *
3664428 GATAAATGTCATGTATCCTAATGAA-TAGAAAGTGTTTTTGGTTCCCAATCTTGAAAAGAATG-A
1 CATCAATATCATGTATCCTAAT-AAGGAGAATGTGTTTATGGTGCCTAATCTAGAAAAGAATGAA
* * * ** * * * ** * *
3664491 GA-CTGTTA-GGATAAT-GGTGCTTGTCTTATTTAAGGAATGAGA-TTTGATATTAGGGAAAGTA
65 GATC-ATTACTGAGAATCCATACTTGTCTTATTTAAGG-ACGA-ACTTTGAT-TTTGCAAAAATT
** * * ** *
3664552 GGGCA-AAGAAAAG--TTTTTTGTGTAATAGAAAAT
126 GGTTAGAA-AAAAGCCTTTCTTGCG-AA-ACCAAAG
* ** * * * *
3664585 CATCAATATCATTTATCCTAATGTGAAGAATGTGTTTATAGTGCCTAATC-ACAATATGAATGAA
1 CATCAATATCATGTATCCTAATAAGGAGAATGTGTTTATGGTGCCTAATCTAGAA-AAGAATGAA
* ** * ** * *
3664649 GATCATTTCT-AGAATCCATGTTTGTCTCATTTAAGGTACGAACTTAAAGTTTACAAAAATTGGT
65 GATCATTACTGAGAATCCATACTTGTCTTATTTAAGG-ACGAACTTTGATTTTGCAAAAATTGGT
* * * * *
3664713 TGGAAAAAAACCTTTCTAGTGAAACCAAAA
129 TAGAAAAAAGCCTTTCTTGCGAAACCAAAG
* * * * * *
3664743 CATTAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT-G-AAAGAAAT-A
1 CATCAATATCATGTATCCTAATAAGGAGAATGTGTTTATGGTGCCTAAT-CTAGAAAAG-AATGA
* * * * * * * * *
3664805 GGGATTA-GAATGAGTATTCA-AATTAGTCTTATTTAAGAGACAAACTTTGATTCTGCCAAAAAT
64 -AGATCATTACTGAGAATCCATACTT-GTCTTATTTAAG-GACGAACTTTGATTTTG-CAAAAAT
* * ** * *
3664868 GATGG--A-AAGAAAAGCTTTTCCTATGACATCAAAG
125 --TGGTTAGAA-AAAAGCCTTTCTTGCGAAACCAAAG
* * * * * * ** *
3664902 CATCAAT-GCTGTGTATCCTAATGAAGG-GATTGTGTTTTTGGTTCCTAATCTTGAAATTAATGG
1 CATCAATATC-ATGTATCCTAAT-AAGGAGAATGTGTTTATGGTGCCTAATCTAGAAAAGAATGA
* ** * * * * ** *
3664965 AGA-CTGTTA-TGAGAATTGA-AGCATGTCTTATTTACGGTATGAATTTTGATTCAAAGGAAAAA
64 AGATC-ATTACTGAGAATCCATA-CTTGTCTTATTTAAGG-ACGAACTTTGATT--TTGCAAAAA
** ** * * * * ** *
3665027 AAGGGCAGATAAAAG-TTTTCCATGCTAAAGAAAAT
124 TTGGTTAGAAAAAAGCCTTT-CTTGCGAAACCAAAG
* * * * * ** *
3665062 CATTAGTATCATTTATCCAAATGAGGAGAATGTGTTTACAGTGCCTAATC-ACAAAATGAATGAA
1 CATCAATATCATGTATCCTAATAAGGAGAATGTGTTTATGGTGCCTAATCTAGAAAA-GAATGAA
* ** * * * * *
3665126 GATCATTGCT-AGAATCCATGTTTGTCTCATTTGAGGCACGAACTTGGACTTTAC-AAAATTGGT
65 GATCATTACTGAGAATCCATACTTGTCTTATTTAAGG-ACGAACTTTGATTTTGCAAAAATTGGT
* *
3665189 TGGAAAAAAGCTTTTCTTGCGAAACCAAAG
129 TAGAAAAAAGCCTTTCTTGCGAAACCAAAG
* * * * * * * * *
3665219 TATCAATATTATGTTTCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAATAAT--AG
1 CATCAATATCATGTATCCTAATAAGGAGAATGTGTTTATGGTGCCTAATCTAGAAAAGAATGAAG
** * * * ** * *
3665282 -GGATTACTTTGGGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTTTAGCAAAAA-TG
66 ATCATTAC--TGAGAATCCATACTTGTCTTATTTAAG-GACGAACTTTGATTTT-GCAAAAATTG
** * * * *
3665345 GTGGGAAGAAAAACTTTTCCTGCGACACCAAAG
127 GTTAGAA-AAAAGCCTTTCTTGCGAAACCAAAG
3665378 CATCAAT
1 CATCAAT
3665385 GAAGGAATGT
Statistics
Matches: 2427, Mismatches: 798, Indels: 501
0.65 0.21 0.13
Matches are distributed among these distances:
147 1 0.00
148 3 0.00
149 49 0.02
150 45 0.02
151 3 0.00
153 4 0.00
154 65 0.03
155 48 0.02
156 96 0.04
157 548 0.23
158 532 0.22
159 858 0.35
160 156 0.06
161 19 0.01
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (158 bp):
CATCAATATCATGTATCCTAATAAGGAGAATGTGTTTATGGTGCCTAATCTAGAAAAGAATGAAG
ATCATTACTGAGAATCCATACTTGTCTTATTTAAGGACGAACTTTGATTTTGCAAAAATTGGTTA
GAAAAAAGCCTTTCTTGCGAAACCAAAG
Found at i:3666532 original size:475 final size:473
Alignment explanation
Indices: 3661703--3666677 Score: 5181
Period size: 475 Copynumber: 10.6 Consensus size: 473
3661693 AGCTTATCTT
* * * *
3661703 ATTTAAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCTAAAA-AAAATCATCAACATCATTTAT
1 ATTTTAAGGAAAATAGGGCAAGGAAAAGATTTCCATGC-AAAAGAAAATCATCAATATCATTTAT
* *
3661767 CCTAATAAGGAGAATGTGTTTATAGTGTCTAATCACAAAATGAATGAAGATCATTACTAAAATCC
65 CCTAATAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
* * * *
3661832 ATGTTTGTCTCATTTGAGGCACGAACTTGCACTTTA-AAAATATTAGTAGGAGAAATA-CCTTTC
130 ATGTTTGTCTCATTTGAGGCACGAACTTGGACTTTACAAAA-ATTGGTTGGA-AAAAAGCCTTTC
* * ** * *
3661895 TTGCGAAACCAAAACATTAATATCGTGTATCCCAATGAGAAGACTATGTTTATGGCGCCTAATCC
193 TTGCGAAACCAAAGCATCAATATAATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCC
* * ** * *
3661960 TAAAAAGAATGGGGATTAGAAAGAGTA-TCAAATTTGTCTTATTTGAAG-GACAAATTTTGATTC
258 T-AAAAGAATGGGGATTAGTATGAGTATTCATGTTTATCTTATTT-AAGAGACAAACTTTGATTC
* * *
3662023 TATCAAAAACGACGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTTATGTATCCTAA
321 TATCAAAAACGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAA
* * * **
3662088 TGAAAGGAATGTGTTTTTGGTTCCCAATTTTGAAAAGAGTGGAGACTGTTACGAGAA-AAAGTGC
386 T--AAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGA-TGC
*
3662152 TTGCCTTATTTAAGGAATGAACTTTG
448 TTGTCTTATTTAAGGAATGAACTTTG
* * ** * *
3662178 ATTTTAGGGAAAGTAGGGCAAAAAAAAGATTTCGATGCAATAA-AAAATCATCATTATC-TTATA
1 ATTTTAAGGAAAATAGGGCAAGGAAAAGATTTCCATGCAA-AAGAAAATCATCAATATCATT-TA
* * * * *
3662241 TCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAGATGAATGAACATCATTTCTAGAATC
64 TCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC
* * * * *
3662306 CATGTTTGTCTCATTTAAGGTATGAACTTGGACTTTACAAAAATTGGTTAGGCAAAAA-CCTTTG
129 CATGTTTGTCTCATTTGAGGCACGAACTTGGACTTTACAAAAATTGGTT-GGAAAAAAGCCTTTC
* *
3662370 TTGCGAAAGCAAAGCTTCAATA-AGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC
193 TTGCGAAACCAAAGCATCAATATA-ATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC
* *** ** *
3662434 TTGAAAA-AAAAAGGATTAAAATGAGTATTCA-GGTTAGTCTTA-TTAAGAGACAAACTTTGATT
257 CT-AAAAGAATGGGGATTAGTATGAGTATTCATGTTTA-TCTTATTTAAGAGACAAACTTTGATT
* * * * * * * *
3662496 ATATTAAAAA-TAGTGAAAATAAAAGTTTTTCTTGCGACACCATAGAATCAATGTCATGTATCCT
320 CTATCAAAAACGA-TGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT
* * * * *
3662560 AACGAATGGAATGTGTTTTTGGTTCCTAATCTTGAGAAGAATAGAGACTATTATGAGAATCGATG
384 AA-TAA-GGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATG
* * *
3662625 CTGGTATTATTTAAGGGATGAACTTTG
447 CTTGTCTTATTTAAGGAATGAACTTTG
* * *
3662652 ATTTTAAGTAAACTAGGG-TAGAGAAAAGATTTCC-TAGCAAAAGAAAATCATCAATATCATTTA
1 ATTTTAAGGAAAATAGGGCAAG-GAAAAGATTTCCAT-GCAAAAGAAAATCATCAATATCATTTA
* *
3662715 TCCTAATAAGG-GAAATGTGTTTATTA-TGCCTAATCACAAAATGAATGATGATCATTACTAGAG
64 TCCTAATAAGGAG-AATGTGTTTA-TAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAA
* * * *
3662778 CCCATGTTTGTCTCATTTAAGGCACGAACTTAGG--TTTCGCAAAAATTGATTGG-AAAAAG-CT
127 TCCATGTTTGTCTCATTTGAGGCACGAACTT-GGACTTT-ACAAAAATTGGTTGGAAAAAAGCCT
* * *
3662839 TT-TTG-GAAACCAAAGCATCAATATGATTTATCCTAATGAGAAGACTATGTTTTTGGTGCCTAA
190 TTCTTGCGAAACCAAAGCATCAATATAATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAA
* * * *
3662902 TACTGAAAAGAATGGGGATTAGTATGAGTATTTTAAGTTTATCTTATTCAAGAGACAAACTTTGA
255 TCCT-AAAAGAATGGGGATTAGTATGAGTA-TTCATGTTTATCTTATTTAAGAGACAAACTTTGA
* * * * *
3662967 TTCTATGAAAAA-TAGTGGAAA-AAAAGGTTTTCTTGTGACACCAAAGCATCATTGTCATGTATC
318 TTCTATCAAAAACGA-TGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
** * * * *
3663030 CTAA-AGAGG---G-G--AAT-ATTCCTAATCTTGAAAAGAATGGAAACTGTTACGAGAATCGAT
382 CTAATA-AGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGAT
* **
3663087 GCTAGTCTTATTTAAGGGTTGAACTTTG
446 GCTTGTCTTATTTAAGGAATGAACTTTG
* * * * *
3663115 ATTTTAAGCAAAATAAGGC-AGAGAAGAGATTTCCAAG-AAAATGAAAATCATCAGTATCA-TTA
1 ATTTTAAGGAAAATAGGGCAAG-GAAAAGATTTCCATGCAAAA-GAAAATCATCAATATCATTTA
** * *
3663177 TCCTAATAAGGAGAATGCATTTATAGTGCCTAATCACAAAATGAATGAAGATCATTATTAGAACC
64 TCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC
*
3663242 CATGTTTGTCTCATTTGAGGCAAGAACTTGGACTTTAC-AAAATTGGTTGGAAAAAAGCCTTTCT
129 CATGTTTGTCTCATTTGAGGCACGAACTTGGACTTTACAAAAATTGGTTGGAAAAAAGCCTTTCT
* * * * * * *
3663306 TGCAAAACCAAAACATGAATATGATGTATCCTAATGAGAAAACTATGTTTATGGTGCCCAATCTT
194 TGCGAAACCAAAGCATCAATATAATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT
* * * * * *
3663371 GAAAATAATAAGGG-TTAGTGTAAGTATTCAGGTTTATCTTAGTTAAGAGACAAACTTTGATTCT
259 -AAAAGAAT-GGGGATTAGTATGAGTATTCATGTTTATCTTATTTAAGAGACAAACTTTGATTCT
* * * * * * *
3663435 ATCAAACACGGTGGAAAGAAATGCTTTT-TCTGTG-CA-TAAAGCATCAATGTCACGTATCTTAA
322 ATCAAAAACGATGGAAAGAAAAGCTTTTCT-TGCGACACCAAAGCATCAATGTCATGTATCCT-A
* * * * *
3663497 AGAAGGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTATTATGAGAATCAAAGCT
385 ATAA-GGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCT
* *
3663562 TGTCTTATTTAAAGTATGAACTTTG
449 TGTCTTATTTAAGGAATGAACTTTG
* *
3663587 ATTTAAAGGAAAATAGGGC-AGAGAAAAGATTTTCATGCTAAAA-AAAATCATCAATATCATTTA
1 ATTTTAAGGAAAATAGGGCAAG-GAAAAGATTTCCATGC-AAAAGAAAATCATCAATATCATTTA
* * * * *
3663650 TCCTAATAAGGAGAATGTGTTTATAGTGCCTAATTAGAAAATGATTGAAAATCATTACTAGAACC
64 TCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC
* * * * * *
3663715 CATATTTGTCTCTTTTGAGGCACGAACTTTGATTTTGCAAAAATTGGTTAGAAAAAAAGCCTTTC
129 CATGTTTGTCTCATTTGAGGCACGAACTTGGACTTTACAAAAATTGGTT-GGAAAAAAGCCTTTC
* * * * *
3663780 TTGCGAAACCAAAGCATCAATATTATATATTCTAAAGAGAAGACTATGTTTATGGTACCTAATCC
193 TTGCGAAACCAAAGCATCAATATAATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCC
* * * *
3663845 TGAAAAGAATGGGGATTAGAATGAGTATTCATATTTGTCTTACTTAAGAGACAAACTTTGATTCT
258 T-AAAAGAATGGGGATTAGTATGAGTATTCATGTTTATCTTATTTAAGAGACAAACTTTGATTCT
* * * ** *
3663910 ATCAAAAACGGTAGAAAAAAAAGCTTTTCTTATGACACCAAAGCATCAATGTCATGTATCTTAAT
322 ATCAAAAACGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT
** * * * * *
3663975 AATGGAAACATGTTTTGGGTTCCCAATCTTGAAAAGAACGGAGACGGTTATGAGAATCGATACTA
387 AA-GG-AATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTT
*
3664040 GTCTTATTTAA-AAGATGAACTTTG
450 GTCTTATTTAAGGA-ATGAACTTTG
* * * *
3664064 ATTTTAAGCAAAATTGGGC-AGAGAAAAGATTTCCAAGCAAAAGAAAATCATCAATATCATCTAT
1 ATTTTAAGGAAAATAGGGCAAG-GAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTAT
* * * *
3664128 CCTAATAAGGAGAATGTGTTTATAGCGCCTAATCACAAAATGATTGAAGACCATTACTAGAAACC
65 CCTAATAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
* * * * *
3664193 ATGCTTGTCTCATTTGAGGTACGAACTTGGATTTTGCAAAAATTGGTTAGAAAAAA-CCTTTCTT
130 ATGTTTGTCTCATTTGAGGCACGAACTTGGACTTTACAAAAATTGGTTGGAAAAAAGCCTTTCTT
* * * * *
3664257 GTGAAACCAAATCATCAATATGATGTATCCTACTGAGAAGACTATGTTTATGGTGCCTAATCTTA
195 GCGAAACCAAAGCATCAATATAATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTA
* *
3664322 AAAGGAATGGGGATTAGAATAAGTATTCATG-TTAGTCTTATTTAAGAGACAAACTTTGATTCTA
260 AAA-GAATGGGGATTAGTATGAGTATTCATGTTTA-TCTTATTTAAGAGACAAACTTTGATTCTA
* * * * *
3664386 TCAAAATCGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGGATAAATGTCATGTATCCTAATG
323 TCAAAAACGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT-
* * * * *
3664451 AATAGAAAGTGTTTTTGGTTCCCAATCTTGAAAAGAAT-GAGACTGTTAGGATAAT-GGTGCTTG
387 AA-GGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTG
3664514 TCTTATTTAAGGAATGAGA-TTTG
451 TCTTATTTAAGGAATGA-ACTTTG
* * * * * *** * *
3664537 ATATTAGGGAAAGTAGGGCAAAGAAAAGTTTTTTGTGTAATAGAAAATCATCAATATCATTTATC
1 ATTTTAAGGAAAATAGGGCAAGGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATC
** * * *
3664602 CTAATGTGAAGAATGTGTTTATAGTGCCTAATCACAATATGAATGAAGATCATTTCTAGAATCCA
66 CTAATAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA
* * ** * * *
3664667 TGTTTGTCTCATTTAAGGTACGAACTTAAAGTTTACAAAAATTGGTTGGAAAAAAACCTTTCTAG
131 TGTTTGTCTCATTTGAGGCACGAACTTGGACTTTACAAAAATTGGTTGGAAAAAAGCCTTTCTTG
* * * * *
3664732 TGAAACCAAAACATTAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGA
196 CGAAACCAAAGCATCAATATAATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAA
* * ** **
3664797 AAGAAATAGGGATTAGAATGAGTATTCA-AATTAGTCTTATTTAAGAGACAAACTTTGATTCTGC
261 AAG-AATGGGGATTAGTATGAGTATTCATGTTTA-TCTTATTTAAGAGACAAACTTTGATTCTAT
* * ** * *
3664861 CAAAAATGATGGAAAGAAAAGCTTTTCCTATGACATCAAAGCATCAATG-CTGTGTATCCTAATG
324 CAAAAACGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC-ATGTATCCTAAT-
* * ** * * *
3664925 AAGGGATTGTGTTTTTGGTTCCTAATCTTGAAATTAATGGAGACTGTTATGAGAATTGAAGCATG
387 AA-GGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTG
* * *
3664990 TCTTATTTACGGTATGAATTTTG
451 TCTTATTTAAGGAATGAACTTTG
** * * * * * *
3665013 ATTCAAAGGAAAAAAAGGGC-AGATAAAAGTTTTCCATGCTAAAGAAAATCATTAGTATCATTTA
1 ATTTTAAGG-AAAATAGGGCAAG-GAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTA
* * * *
3665077 TCCAAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAAGATCATTGCTAGAATC
64 TCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC
*
3665142 CATGTTTGTCTCATTTGAGGCACGAACTTGGACTTTAC-AAAATTGGTTGGAAAAAAGCTTTTCT
129 CATGTTTGTCTCATTTGAGGCACGAACTTGGACTTTACAAAAATTGGTTGGAAAAAAGCCTTTCT
* * * *
3665206 TGCGAAACCAAAGTATCAATATTATGTTTCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTT
194 TGCGAAACCAAAGCATCAATATAATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT
* * * * * * * *
3665271 GAAAATAATAGGGATTACTTTGGGTATTCATGTTTGTCGTATTTAAGAGACAAACTTTGATTTTA
259 -AAAAGAATGGGGATTAGTATGAGTATTCATGTTTATCTTATTTAAGAGACAAACTTTGATTCTA
* * * * * *
3665336 GCAAAAATGGTGGGAAGAAAAACTTTTCCTGCGACACCAAAGCATC-A----ATG---------A
323 TCAAAAACGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATA
* *
3665387 AGGAATGTGTTTTAGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTG--
388 AGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTGTC
3665450 ---TTTAAGG-ATGAACTTTG
453 TTATTTAAGGAATGAACTTTG
* * *
3665467 ATTTTAAGGAAAATAAGGTAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATC
1 ATTTTAAGGAAAATAGGGCAAGGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATC
* ** * *
3665532 CTAATGAGGAGAATACGTTTATAGTGACC-AATCATAAAATGAATAAAGATCATTACTAGAATCC
66 CTAATAAGGAGAATGTGTTTATAGTG-CCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
* ** * * * * * * * *
3665596 ATGTTTATCTTTTTTGAAGCACAAACTCT-AACTTTACGAAAATTGGTGGGATACAAGCCTTTTT
130 ATGTTTGTCTCATTTGAGGCACGAACT-TGGACTTTACAAAAATTGGTTGGAAAAAAGCCTTTCT
* * ** * * * *
3665660 TGCAAAACCAAAACATCAATATCCTATATCCTAATGAGAAGATTATGTTTCTGGTGCCTAATCTT
194 TGCGAAACCAAAGCATCAATATAATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT
*** * * ** * *
3665725 GAATTCAATGGGGAATAGTATGACTATTCATGTTTGCCTTATTTAAGAGACAAACATTGATTCTG
259 -AAAAGAATGGGGATTAGTATGAGTATTCATGTTTATCTTATTTAAGAGACAAACTTTGATTCTA
* * * * * *
3665790 TCCAAAATA-G-TGGAAAGAAAAACTTTTCCTACAATACTAAAGCATC-A----A--TA----AA
323 T-CAAAA-ACGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAA
* * *
3665842 T---GAAAGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTAACGAGAATCGATGCTTG
386 TAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTG
3665904 TCTTATTTAAGGGAA-GAACTTTG
451 TCTTATTTAA-GGAATGAACTTTG
* * * * * *
3665927 ATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCTAGGTAATAGAAAATCATCAATATCATTTATC
1 ATTTTAAGGAAAATAGGGCAAGGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATC
** * * * * ** *
3665992 CTACCAAGGAGAATGTGTTTATAATGCTTAATCATAAAATGATTGAAGATCGCTACTACAATCCA
66 CTAATAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA
* * * * *
3666057 TGTTTGTCTCATTTGTGGCATGAACTTAGACTTTACGAAAATTGGTTGGAAAAAAGCCTTTCGTG
131 TGTTTGTCTCATTTGAGGCACGAACTTGGACTTTACAAAAATTGGTTGGAAAAAAGCCTTTCTTG
* * * ** * *
3666122 GGAAACCAAAGCATCAATATAAAGTATCGTAACAAGAAGATTATGTTTATGGTACCTAATCCTAA
196 CGAAACCAAAGCATCAATATAATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAA
* * * *
3666187 AATGAATGCGGATTAGTATGAATATTCATGTTTATCTTATATAAGAGATAAACTTTGATTCTATC
261 AA-GAATGGGGATTAGTATGAGTATTCATGTTTATCTTATTTAAGAGACAAACTTTGATTCTATC
* * *
3666252 AAAAACGATGGTAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAATATA
325 AAAAACGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATA-A
* * * * **
3666317 GGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATAGAGATTGTTATGAGAGTAGATGCTTAACT
389 GGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTGTCT
*
3666382 TATTAAAGGAATGAACTTTG
454 TATTTAAGGAATGAACTTTG
** * **
3666402 ATTTTTGGGAAAGTAGGGCAAGGAAAAGATTTCCATGCATTAGAAAATCATCAATATCATTTATC
1 ATTTTAAGGAAAATAGGGCAAGGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATC
* * * * *
3666467 CTAATGAGAAGAATGTGTTTATTA-TGCCTAATCATAAAATGAATAAAGATCATTTCTAGAATCC
66 CTAATAAGGAGAATGTGTTTA-TAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
* * * * * *
3666531 ATGTTTGTCTCATTTGAGGTATGAACATGGACTTTACAAAAATTGGTTGGAAAAGAGCCTTTGTA
130 ATGTTTGTCTCATTTGAGGCACGAACTTGGACTTTACAAAAATTGGTTGGAAAAAAGCCTTTCTT
* * *
3666596 GCAAAACCAAAGCATCAATATAATGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCTG
195 GCGAAACCAAAGCATCAATATAATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTA
3666661 AAAGAATGGGGATTAGT
260 AAAGAATGGGGATTAGT
3666678 GTAAACACTT
Statistics
Matches: 3783, Mismatches: 596, Indels: 243
0.82 0.13 0.05
Matches are distributed among these distances:
453 128 0.03
454 239 0.06
455 12 0.00
456 1 0.00
458 1 0.00
459 15 0.00
460 355 0.09
461 19 0.01
462 96 0.03
463 136 0.04
464 56 0.01
465 87 0.02
466 4 0.00
467 3 0.00
468 1 0.00
469 1 0.00
470 62 0.02
471 25 0.01
472 165 0.04
473 326 0.09
474 559 0.15
475 882 0.23
476 227 0.06
477 383 0.10
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.31
Consensus pattern (473 bp):
ATTTTAAGGAAAATAGGGCAAGGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATC
CTAATAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA
TGTTTGTCTCATTTGAGGCACGAACTTGGACTTTACAAAAATTGGTTGGAAAAAAGCCTTTCTTG
CGAAACCAAAGCATCAATATAATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAA
AAGAATGGGGATTAGTATGAGTATTCATGTTTATCTTATTTAAGAGACAAACTTTGATTCTATCA
AAAACGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATAAGG
AATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTGTCTTA
TTTAAGGAATGAACTTTG
Found at i:3667018 original size:20 final size:19
Alignment explanation
Indices: 3666977--3667105 Score: 99
Period size: 20 Copynumber: 6.8 Consensus size: 19
3666967 TTTTCACAAT
* *
3666977 TTGTATCGATGCATTTTGCA
1 TTGTATCGATACATTCT-CA
3666997 TTGTATCGATACATTGCTCA
1 TTGTATCGATACATT-CTCA
*
3667017 TTGTAT---TA-A-TAT-A
1 TTGTATCGATACATTCTCA
3667030 TTGTATCGATACATTACTCA
1 TTGTATCGATACATT-CTCA
*
3667050 TTGTATCGATACATTTTACA
1 TTGTATCGATACATTCT-CA
* *
3667070 ATGTATCGATACATTTTACA
1 TTGTATCGATACATTCT-CA
* *
3667090 ATGTGTCGATACATTC
1 TTGTATCGATACATTC
3667106 AGGCATTTTT
Statistics
Matches: 92, Mismatches: 8, Indels: 18
0.78 0.07 0.15
Matches are distributed among these distances:
13 7 0.08
14 1 0.01
15 1 0.01
16 3 0.03
17 3 0.03
18 1 0.01
19 2 0.02
20 73 0.79
21 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.13, T:0.43
Consensus pattern (19 bp):
TTGTATCGATACATTCTCA
Found at i:3669571 original size:80 final size:78
Alignment explanation
Indices: 3669403--3669577 Score: 192
Period size: 80 Copynumber: 2.2 Consensus size: 78
3669393 AGATTTTTCA
* * * **
3669403 TCTCAGGGATACTCCAACCCCGGTTCTATTTCCAAAACGTTAATTTTTCTTAATCGGGGATACTC
1 TCTCAGGGATACTCCAACCCCGGTTCTATATCAAAAACATTAATTTTTAATAATCGGGGATACTC
3669468 CAACCCCGTTATT
66 CAACCCCGTTATT
* * * *
3669481 TC-CAAGGGGATACTCCAACCCTGGCTT-TATATCTAAAAATATTATTTTTTAATAATCGGGGGT
1 TCTC-A-GGGATACTCCAACCCCGG-TTCTATATC-AAAAACATTAATTTTTAATAATCGGGGAT
* *
3669544 ACTCTAACCCTGTTATT
62 ACTCCAACCCCGTTATT
3669561 TCATCAGGGATACTCCA
1 TC-TCAGGGATACTCCA
3669578 GTCCCGCTAT
Statistics
Matches: 80, Mismatches: 11, Indels: 10
0.79 0.11 0.10
Matches are distributed among these distances:
77 1 0.01
78 3 0.04
79 22 0.28
80 52 0.65
81 1 0.01
82 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.34
Consensus pattern (78 bp):
TCTCAGGGATACTCCAACCCCGGTTCTATATCAAAAACATTAATTTTTAATAATCGGGGATACTC
CAACCCCGTTATT
Found at i:3669648 original size:108 final size:108
Alignment explanation
Indices: 3669459--3669799 Score: 447
Period size: 108 Copynumber: 3.2 Consensus size: 108
3669449 TTCTTAATCG
* *
3669459 GGGATACTCCAACCCCGTTATTTCCAAGGGGATACTCCAACCCTGGCTTTATATCTAAAAATATT
1 GGGATACTCCAATCCCGTTATTTCCAAGGGGATACTCCAACCCCGGCTTTATATCTAAAAATATT
* *
3669524 ATTTTTTAATAATCGGGGGTACTCTAACCCTGTTATTTCATCA
66 GTTTTTTCATAATCGGGGGTACTCTAACCCTGTTATTTCATCA
* * *
3669567 GGGATACTCCAGTCCCGCTATTTCCAAGGGGATACTCCAACCCCGACTTTATATCTAAAAATATT
1 GGGATACTCCAATCCCGTTATTTCCAAGGGGATACTCCAACCCCGGCTTTATATCTAAAAATATT
*
3669632 GTTTTTTCATAATCGGGGGTACTCTAA-CCTCGTTATTTCATCG
66 GTTTTTTCATAATCGGGGGTACTCTAACCCT-GTTATTTCATCA
* * *
3669675 GGGATACTCCAATCCCGTTATTTCCAAGGGGATACTTCAACCCCGGCCTTATTTCT--AAATCAT
1 GGGATACTCCAATCCCGTTATTTCCAAGGGGATACTCCAACCCCGGCTTTATATCTAAAAAT-AT
* * * * * * *
3669738 CGATTTTTCATAATCAGGGATACTCCAACCCCGTTATTT-TTCGA
65 TGTTTTTTCATAATCGGGGGTACTCTAACCCTGTTATTTCATC-A
*
3669782 GGGGATACTCCAACCCCG
1 -GGGATACTCCAATCCCG
3669800 ATTTCATTTT
Statistics
Matches: 205, Mismatches: 23, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
106 6 0.03
107 35 0.17
108 164 0.80
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.32
Consensus pattern (108 bp):
GGGATACTCCAATCCCGTTATTTCCAAGGGGATACTCCAACCCCGGCTTTATATCTAAAAATATT
GTTTTTTCATAATCGGGGGTACTCTAACCCTGTTATTTCATCA
Found at i:3669682 original size:28 final size:28
Alignment explanation
Indices: 3669643--3669698 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
3669633 TTTTTTCATA
* *
3669643 ATCGGGGGTACTCTAA-CCTCGTTATTTC
1 ATCGGGGATACTCCAATCC-CGTTATTTC
3669671 ATCGGGGATACTCCAATCCCGTTATTTC
1 ATCGGGGATACTCCAATCCCGTTATTTC
3669699 CAAGGGGATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 23 0.92
29 2 0.08
ACGTcount: A:0.20, C:0.27, G:0.20, T:0.34
Consensus pattern (28 bp):
ATCGGGGATACTCCAATCCCGTTATTTC
Found at i:3669830 original size:79 final size:79
Alignment explanation
Indices: 3669675--3669886 Score: 270
Period size: 79 Copynumber: 2.7 Consensus size: 79
3669665 TATTTCATCG
* * * ** *
3669675 GGGATACTCCAATCCCGTTATTTCCAAGGGGATACTTCAACCCCGGCCTTA-TTTCTAAATCATC
1 GGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCC-GATTTATTTTCAAAATCATC
3669739 GATTTTTCATAATCA
65 GATTTTTCATAATCA
*
3669754 GGGATACTCCAACCCCGTTATTTTTCGAGGGGATACTCCAACCCCGATTTCATTTTCAAAAT-A-
1 GGGATACTCCAACCCCGTTA-TTTCCGAGGGGATACTCCAACCCCGATTT-ATTTTCAAAATCAT
3669817 CTGATTTTT-ATAATCA
64 C-GATTTTTCATAATCA
* *
3669833 GGGATACTCCAACCCTGTTATTTCCGAGGGGATACTCCAACCTCGATTTTATTT
1 GGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGA-TTTATTT
3669887 CTTGAACACC
Statistics
Matches: 118, Mismatches: 10, Indels: 11
0.85 0.07 0.08
Matches are distributed among these distances:
78 28 0.24
79 52 0.44
80 30 0.25
81 8 0.07
ACGTcount: A:0.26, C:0.25, G:0.15, T:0.33
Consensus pattern (79 bp):
GGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGATTTATTTTCAAAATCATCG
ATTTTTCATAATCA
Found at i:3669909 original size:79 final size:77
Alignment explanation
Indices: 3669675--3669922 Score: 259
Period size: 79 Copynumber: 3.1 Consensus size: 77
3669665 TATTTCATCG
* * *** *
3669675 GGGATACTCCAATCCCGTTATTTCCAAGGGGATACTTCAACCCCGGCCTTATTTC-TAAATCATC
1 GGGATACTCCAA-CCCGTTATTTCCGAGGGGATACTCCAACCCCGATTTTATTTCTTAAA-CACC
3669739 GATTTTTCATAATCA
64 GA-TTTTCATAATCA
* * * *
3669754 GGGATACTCCAACCCCGTTATTTTTCGAGGGGATACTCCAACCCCGATTTCATTT-TCAAAATAC
1 GGGATACTCCAA-CCCGTTA-TTTCCGAGGGGATACTCCAACCCCGATTTTATTTCT-TAAACAC
* *
3669818 TGATTTTTATAATCA
63 CGATTTTCATAATCA
* * *
3669833 GGGATACTCCAACCCTGTTATTTCCGAGGGGATACTCCAACCTCGATTTTATTTCTTGAACACCA
1 GGGATACTCCAACCC-GTTATTTCCGAGGGGATACTCCAACCCCGATTTTATTTCTTAAACACCG
3669898 ATTTTCCATAATC-
65 ATTTT-CATAATCA
3669911 GAGGATACTCCA
1 G-GGATACTCCA
3669923 GCCCCGTTGT
Statistics
Matches: 140, Mismatches: 22, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
78 44 0.31
79 63 0.45
80 30 0.21
81 3 0.02
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.33
Consensus pattern (77 bp):
GGGATACTCCAACCCGTTATTTCCGAGGGGATACTCCAACCCCGATTTTATTTCTTAAACACCGA
TTTTCATAATCA
Found at i:3684544 original size:13 final size:13
Alignment explanation
Indices: 3684526--3684553 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
3684516 ATTACTCAAA
3684526 TGTATCGATACAT
1 TGTATCGATACAT
3684539 TGTATCGATACAT
1 TGTATCGATACAT
3684552 TG
1 TG
3684554 ATATTTGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3686679 original size:33 final size:33
Alignment explanation
Indices: 3686642--3686711 Score: 140
Period size: 33 Copynumber: 2.1 Consensus size: 33
3686632 GATGTCAAGG
3686642 CACAAATGCTTTTACATCTTTAGCGTCTTCATT
1 CACAAATGCTTTTACATCTTTAGCGTCTTCATT
3686675 CACAAATGCTTTTACATCTTTAGCGTCTTCATT
1 CACAAATGCTTTTACATCTTTAGCGTCTTCATT
3686708 CACA
1 CACA
3686712 TCATTTCCCA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.26, C:0.26, G:0.09, T:0.40
Consensus pattern (33 bp):
CACAAATGCTTTTACATCTTTAGCGTCTTCATT
Found at i:3688598 original size:1 final size:1
Alignment explanation
Indices: 3688594--3688685 Score: 76
Period size: 1 Copynumber: 92.0 Consensus size: 1
3688584 ATTTTTTTTT
* * * * * * * *
3688594 AAAAAAAACAAAAAACAACAAAAAAAACAAAAAAACAAAAAAAAAAGAAAAACAAAAAAAAAACA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * *
3688659 AAACAAAGAAAAAAGAGAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAA
3688686 CCTGCTTAAG
Statistics
Matches: 67, Mismatches: 24, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
1 67 1.00
ACGTcount: A:0.87, C:0.09, G:0.04, T:0.00
Consensus pattern (1 bp):
A
Found at i:3688618 original size:17 final size:17
Alignment explanation
Indices: 3688594--3688685 Score: 98
Period size: 16 Copynumber: 5.3 Consensus size: 17
3688584 ATTTTTTTTT
3688594 AAAAAAAACAAAAAACAA
1 AAAAAAAAC-AAAAACAA
3688612 CAAAAAAAACAAAAAAACAA
1 -AAAAAAAAC--AAAAACAA
*
3688632 AAAAAAAAGAAAAACAA
1 AAAAAAAACAAAAACAA
3688649 AAAAAAAAC-AAAACAA
1 AAAAAAAACAAAAACAA
* * *
3688665 AGAAAAAAGAGAAA-AA
1 AAAAAAAACAAAAACAA
3688681 AAAAA
1 AAAAA
3688686 CCTGCTTAAG
Statistics
Matches: 65, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
16 20 0.31
17 19 0.29
19 17 0.26
20 9 0.14
ACGTcount: A:0.87, C:0.09, G:0.04, T:0.00
Consensus pattern (17 bp):
AAAAAAAACAAAAACAA
Found at i:3688625 original size:27 final size:26
Alignment explanation
Indices: 3688595--3688682 Score: 106
Period size: 25 Copynumber: 3.3 Consensus size: 26
3688585 TTTTTTTTTA
3688595 AAAAAAACAAAAAACAACAAAAAAAAC
1 AAAAAAACAAAAAACAA-AAAAAAAAC
*
3688622 AAAAAAACAAAAAA-AAAAGAAAAAC
1 AAAAAAACAAAAAACAAAAAAAAAAC
* *
3688647 AAAAAAAAAACAAAACAAAGAAAAAAGAG
1 AAAAAAACAA-AAAACAAA-AAAAAA-AC
3688676 AAAAAAA
1 AAAAAAA
3688683 AAACCTGCTT
Statistics
Matches: 53, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
25 17 0.32
26 6 0.11
27 17 0.32
28 5 0.09
29 8 0.15
ACGTcount: A:0.86, C:0.09, G:0.05, T:0.00
Consensus pattern (26 bp):
AAAAAAACAAAAAACAAAAAAAAAAC
Found at i:3688638 original size:37 final size:37
Alignment explanation
Indices: 3688594--3688672 Score: 117
Period size: 36 Copynumber: 2.2 Consensus size: 37
3688584 ATTTTTTTTT
*
3688594 AAAAAAAACA-AAAAACAACAAAAAAAACAAAA-AAAC
1 AAAAAAAAAAGAAAAACAA-AAAAAAAACAAAACAAAC
*
3688630 AAAAAAAAAAGAAAAACAAAAAAAAAACAAAACAAAG
1 AAAAAAAAAAGAAAAACAAAAAAAAAACAAAACAAAC
3688667 AAAAAA
1 AAAAAA
3688673 GAGAAAAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
36 22 0.56
37 17 0.44
ACGTcount: A:0.87, C:0.10, G:0.03, T:0.00
Consensus pattern (37 bp):
AAAAAAAAAAGAAAAACAAAAAAAAAACAAAACAAAC
Found at i:3688645 original size:45 final size:46
Alignment explanation
Indices: 3688597--3688685 Score: 128
Period size: 45 Copynumber: 2.0 Consensus size: 46
3688587 TTTTTTTAAA
*
3688597 AAAAAC-AAAAAACAACAAAAAAAACAAAAAA-ACAAAAAAAAAAG
1 AAAAACAAAAAAAAAACAAAAAAAACAAAAAAGACAAAAAAAAAAG
* * *
3688641 AAAAACAAAAAAAAAACAAAACAAAGAAAAAAGAGAAAAAAAAAA
1 AAAAACAAAAAAAAAACAAAAAAAACAAAAAAGACAAAAAAAAAA
3688686 CCTGCTTAAG
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
44 6 0.15
45 22 0.56
46 11 0.28
ACGTcount: A:0.87, C:0.09, G:0.04, T:0.00
Consensus pattern (46 bp):
AAAAACAAAAAAAAAACAAAAAAAACAAAAAAGACAAAAAAAAAAG
Found at i:3688672 original size:19 final size:18
Alignment explanation
Indices: 3688594--3688661 Score: 102
Period size: 19 Copynumber: 3.7 Consensus size: 18
3688584 ATTTTTTTTT
3688594 AAAAAAAACAAAAAACAA
1 AAAAAAAACAAAAAACAA
3688612 CAAAAAAAACAAAAAAACAA
1 -AAAAAAAAC-AAAAAACAA
*
3688632 AAAAAAAA-GAAAAACAA
1 AAAAAAAACAAAAAACAA
3688649 AAAAAAAACAAAA
1 AAAAAAAACAAAA
3688662 CAAAGAAAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 5
0.87 0.04 0.10
Matches are distributed among these distances:
17 16 0.36
18 3 0.07
19 17 0.38
20 9 0.20
ACGTcount: A:0.88, C:0.10, G:0.01, T:0.00
Consensus pattern (18 bp):
AAAAAAAACAAAAAACAA
Done.