Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold407
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4418299
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 127125 characters in sequence are not A, C, G, or T
File 24 of 28
Found at i:3688681 original size:11 final size:10
Alignment explanation
Indices: 3688594--3688683 Score: 85
Period size: 11 Copynumber: 8.8 Consensus size: 10
3688584 ATTTTTTTTT
3688594 AAAAAAAACA
1 AAAAAAAACA
*
3688604 AAAAACAAC-
1 AAAAAAAACA
3688613 AAAAAAAACA
1 AAAAAAAACA
*
3688623 AAAAAACA-A
1 AAAAAAAACA
*
3688632 AAAAAAAAGA
1 AAAAAAAACA
*
3688642 AAAACAAAAAA
1 AAAA-AAAACA
3688653 AAAACAAAACA
1 AAAA-AAAACA
*
3688664 AAGAAAAAAGA
1 AA-AAAAAACA
3688675 GAAAAAAAA
1 -AAAAAAAA
3688684 AACCTGCTTA
Statistics
Matches: 68, Mismatches: 7, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
9 16 0.24
10 20 0.29
11 28 0.41
12 4 0.06
ACGTcount: A:0.87, C:0.09, G:0.04, T:0.00
Consensus pattern (10 bp):
AAAAAAAACA
Found at i:3688683 original size:27 final size:25
Alignment explanation
Indices: 3688594--3688686 Score: 96
Period size: 28 Copynumber: 3.4 Consensus size: 25
3688584 ATTTTTTTTT
3688594 AAAAAAAACAAAAAACAACAAAAAAAA
1 AAAAAAAACAAAAAA-AA-AAAAAAAA
*
3688621 CAAAAAAACAAAAAAAAAAGAAAAACAA
1 AAAAAAAAC-AAAAAAAAA-AAAAA-AA
3688649 AAAAAAAACAAAACAAAGAAAAAAGAGAA
1 AAAAAAAACAAAA-AAA-AAAAAA-A-AA
3688678 AAAAAAAAC
1 AAAAAAAAC
3688687 CTGCTTAAGC
Statistics
Matches: 57, Mismatches: 3, Indels: 10
0.81 0.04 0.14
Matches are distributed among these distances:
26 1 0.02
27 19 0.33
28 23 0.40
29 14 0.25
ACGTcount: A:0.86, C:0.10, G:0.04, T:0.00
Consensus pattern (25 bp):
AAAAAAAACAAAAAAAAAAAAAAAA
Found at i:3688684 original size:28 final size:26
Alignment explanation
Indices: 3688594--3688686 Score: 105
Period size: 27 Copynumber: 3.3 Consensus size: 26
3688584 ATTTTTTTTT
*
3688594 AAAAAAAACAAAAAACAACAAAAAAAA
1 AAAAAAAACAAAAAA-AAAAAAAAAAA
*
3688621 CAAAAAAACAAAAAAAAAAGAAAAACAA
1 AAAAAAAACAAAAAAAAAA-AAAAA-AA
*
3688649 AAAAAAAACAAAACAAAGAAAAAAGAGAA
1 AAAAAAAACAAAA-AAA-AAAAAA-AAAA
3688678 AAAAAAAAC
1 AAAAAAAAC
3688687 CTGCTTAAGC
Statistics
Matches: 57, Mismatches: 4, Indels: 8
0.83 0.06 0.12
Matches are distributed among these distances:
26 3 0.05
27 19 0.33
28 14 0.25
29 17 0.30
30 4 0.07
ACGTcount: A:0.86, C:0.10, G:0.04, T:0.00
Consensus pattern (26 bp):
AAAAAAAACAAAAAAAAAAAAAAAAA
Found at i:3689917 original size:61 final size:61
Alignment explanation
Indices: 3689764--3690708 Score: 951
Period size: 61 Copynumber: 16.0 Consensus size: 61
3689754 ACGTATTTCG
*
3689764 AAGCCCACACAAGTTGGTGGCACATT-TCAGTCCTCAAAGAGCAGGACGCCTT-T-C----A
1 AAGCCCACACAAGTTGGTGGCAC-TTCCCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTA
* * * *
3689819 AAGCCCACACAAGTTGGTGGCACTTCCCAGTCGTCAAAGAGTAGGACACCTTCTCTTTTTA
1 AAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTA
* * * * *
3689880 AAGCCCACACGAGTTGGTGGCACTTCCCAATCTTCAAAGAGCAGGACGCCTTCACCTTTCA
1 AAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTA
* * * * *
3689941 AAGCCCACACAAGTTAGTGGCACCTT--TAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTCA
1 AAGCCCACACAAGTTGGTGGCA-CTTCCCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTA
** * *
3690001 AAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAAAACACCTTCTCTTTTTA
1 AAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTA
* * *
3690062 AAGCTCACACGAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGCCTT-TGCCTTTCA
1 AAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGCCTTCT-CCTTTTA
* *
3690123 AAGCCCACACAAGTTGGTGGCACCTT--CAGTCTTCAAAGAGCAGGACGCCTTCTCC-TTCA
1 AAGCCCACACAAGTTGGTGGCA-CTTCCCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTA
* ** * *
3690182 AAGCCCACACGAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAAAATGCCTT-TGCCTTTCA
1 AAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGCCTTCT-CCTTTTA
* *
3690243 AAGCCCACACAAGTTGGTGGCACCTT--CAGTCTTCAAAGAGCAGGACGCCTTCTCC-TTCA
1 AAGCCCACACAAGTTGGTGGCA-CTTCCCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTA
** * * ** * * **
3690302 AAGCCCACATGAGTTGGTGGCAC-CCTCCAGCCCTCAAAGAATAGGACACCTTTTTTTTTTA
1 AAGCCCACACAAGTTGGTGGCACTTC-CCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTA
** * *
3690363 AAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAAAGTAGGACGCCTT-T-C----A
1 AAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTA
* * ***
3690418 AAGCCTACACAAGTTGGTGGCATTTTTTAGTCCTCAAAGAGCAGGACG------CCTTTTA
1 AAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTA
* * * *
3690473 AAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGTAGGACGCCTTTTCCTTTTA
1 AAGCCCACACAAGTTGGTGGCAC-TTCCCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTA
* * * *
3690535 AAGGCCACACAAGTTGGTGGCATCTT--TAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTA
1 AAGCCCACACAAGTTGGTGGCA-CTTCCCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTA
* *** *
3690595 AAGCCCACACAAGTTGGTGGCATTTTTTAGTCCTCAAAGAGTAGGACG------CCTTTTA
1 AAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTA
*
3690650 AAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACG-CTCTCTCCTTT
1 AAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGCCT-TCTCCTTT
3690709 CACCCTTTAG
Statistics
Matches: 753, Mismatches: 92, Indels: 84
0.81 0.10 0.09
Matches are distributed among these distances:
51 1 0.00
54 2 0.00
55 162 0.22
56 24 0.03
58 4 0.01
59 55 0.07
60 197 0.26
61 268 0.36
62 39 0.05
63 1 0.00
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (61 bp):
AAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTA
Found at i:3690233 original size:120 final size:120
Alignment explanation
Indices: 3689759--3690698 Score: 984
Period size: 120 Copynumber: 7.9 Consensus size: 120
3689749 GCAGGACGTA
* *
3689759 TTTCGAAGCCCACACAAGTTGGTGGCACATTTCAGTCCTCAAAGAGCAGGACG-C--CT--TTCA
1 TTTCAAAGCCCACACAAGTTGGTGGCAC-CTTCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTCA
* * * *
3689819 AAGCCCACACAAGTTGGTGGCACTTCCCAGTCGTCAAAGAGTAGGACACCTTCT-CT
65 AAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGCCTT-TGCC
* * * * *
3689875 TTTTAAAGCCCACACGAGTTGGTGGCA-CTTCCCAATCTTCAAAGAGCAGGACGCCTTCACCTTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCTT--CAGTCCTCAAAGAGCAGGACGCCTTCTCC-TT
* * * *
3689939 CAAAGCCCACACAAGTTAGTGGCACCTT--TAGTCCTCAAAGAGCAGGATGCCTTTTCC
63 CAAAGCCCACACAAGTTGGTGGCA-CTTCCCAGTCCTCAAAGAGCAGGACGCCTTTGCC
** * *
3689996 TTTCAAAGCCCACACAAGTTGGTGGCA-CTTCCCAGTCCTCAAAGAGCAAAACACCTTCTCTTTT
1 TTTCAAAGCCCACACAAGTTGGTGGCACCTT--CAGTCCTCAAAGAGCAGGACGCCTTCTC-CTT
* * *
3690060 TAAAGCTCACACGAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGCCTTTGCC
63 CAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGCCTTTGCC
*
3690118 TTTCAAAGCCCACACAAGTTGGTGGCACCTTCAGTCTTCAAAGAGCAGGACGCCTTCTCCTTCAA
1 TTTCAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTCAA
* ** *
3690183 AGCCCACACGAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAAAATGCCTTTGCC
66 AGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGCCTTTGCC
*
3690238 TTTCAAAGCCCACACAAGTTGGTGGCACCTTCAGTCTTCAAAGAGCAGGACGCCTTCTCCTTCAA
1 TTTCAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTCAA
** * * ** * ***
3690303 AGCCCACATGAGTTGGTGGCAC-CCTCCAGCCCTCAAAGAATAGGACACCTTTTTT
66 AGCCCACACAAGTTGGTGGCACTTC-CCAGTCCTCAAAGAGCAGGACGCCTTTGCC
* * * *
3690358 TTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAAAGTAGGACG-C--CT--TTCA
1 TTTCAAAGCCCACACAAGTTGGTGGCAC-CTTCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTCA
* * ***
3690418 AAGCCTACACAAGTTGGTGGCATTTTTTAGTCCTCAAAGAGCAGGACGCC--T---
65 AAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGCCTTTGCC
* * *
3690469 TTT-AAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGTAGGACGCCTTTTCCTTT
1 TTTCAAAGCCCACACAAGTTGGTGGCAC-CTTC-AGTCCTCAAAGAGCAGGACGCCTTCTCC-TT
* * * * *
3690533 TAAAGGCCACACAAGTTGGTGGCATCTT--TAGTCCTCAAAGAGCAGGATGCCTTTTCC
63 CAAAGCCCACACAAGTTGGTGGCA-CTTCCCAGTCCTCAAAGAGCAGGACGCCTTTGCC
* ** * *
3690590 TTTTAAAGCCCACACAAGTTGGTGGCATTTTTTAGTCCTCAAAGAGTAGGACGCC-T-T--TT-A
1 TTTCAAAGCCCACACAAGTTGGTGGCA-CCTTCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTCA
*
3690650 AAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACGC
65 AAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGC
3690699 TCTCTCCTTT
Statistics
Matches: 710, Mismatches: 80, Indels: 68
0.83 0.09 0.08
Matches are distributed among these distances:
110 29 0.04
111 22 0.03
112 1 0.00
114 7 0.01
115 22 0.03
116 129 0.18
117 24 0.03
118 5 0.01
119 3 0.00
120 194 0.27
121 164 0.23
122 104 0.15
123 6 0.01
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.25
Consensus pattern (120 bp):
TTTCAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTCAA
AGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGCCTTTGCC
Found at i:3690620 original size:27 final size:27
Alignment explanation
Indices: 3690590--3690671 Score: 74
Period size: 27 Copynumber: 3.0 Consensus size: 27
3690580 TGCCTTTTCC
3690590 TTTTAAAGCCCACACAAGTTGGTGGCA
1 TTTTAAAGCCCACACAAGTTGGTGGCA
** * * * * ** *
3690617 TTTTTTAGTCCTCAAAGAGTAGGACGCC
1 TTTTAAAGCCCACACA-AGTTGGTGGCA
3690645 TTTTAAAGCCCACACAAGTTGGTGGCA
1 TTTTAAAGCCCACACAAGTTGGTGGCA
3690672 CTTCCTAGTC
Statistics
Matches: 36, Mismatches: 18, Indels: 2
0.64 0.32 0.04
Matches are distributed among these distances:
27 18 0.50
28 18 0.50
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (27 bp):
TTTTAAAGCCCACACAAGTTGGTGGCA
Found at i:3690621 original size:28 final size:28
Alignment explanation
Indices: 3690589--3690674 Score: 77
Period size: 28 Copynumber: 3.1 Consensus size: 28
3690579 ATGCCTTTTC
3690589 CTTTTAAAGCCCACACAAGTTGGTGGCA
1 CTTTTAAAGCCCACACAAGTTGGTGGCA
** * * * * **
3690617 -TTTTTTAGTCCTCAAAGAGTAGGACGC-
1 CTTTTAAAGCCCACACA-AGTTGGTGGCA
3690644 CTTTTAAAGCCCACACAAGTTGGTGGCA
1 CTTTTAAAGCCCACACAAGTTGGTGGCA
3690672 CTT
1 CTT
3690675 CCTAGTCCTC
Statistics
Matches: 39, Mismatches: 16, Indels: 6
0.64 0.26 0.10
Matches are distributed among these distances:
27 18 0.46
28 21 0.54
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (28 bp):
CTTTTAAAGCCCACACAAGTTGGTGGCA
Found at i:3690804 original size:61 final size:60
Alignment explanation
Indices: 3690709--3690850 Score: 205
Period size: 60 Copynumber: 2.4 Consensus size: 60
3690699 TCTCTCCTTT
* * *
3690709 CACCCTTTAGTCCTCAAAGAGCAAGATGCCTTTTCCTTTTAAAGCCCACATAAGTTGGTGG
1 CACCCTTCAGTCCTCAAAGAGCAAGATGCCTTTTCC-TTCAAAGCCCACACAAGTTGGTGG
* *
3690770 CACCCTTCAGTCCACAAAGAGCAGGATGCCTTTTCCTTCAAAGCCCACACAAGTTGGTGG
1 CACCCTTCAGTCCTCAAAGAGCAAGATGCCTTTTCCTTCAAAGCCCACACAAGTTGGTGG
*
3690830 CA-CCTCCTAGTCCTCAAAGAG
1 CACCCTTC-AGTCCTCAAAGAG
3690851 TGGGATGCAC
Statistics
Matches: 73, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
59 4 0.05
60 36 0.49
61 33 0.45
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (60 bp):
CACCCTTCAGTCCTCAAAGAGCAAGATGCCTTTTCCTTCAAAGCCCACACAAGTTGGTGG
Found at i:3691017 original size:62 final size:61
Alignment explanation
Indices: 3690921--3691152 Score: 283
Period size: 61 Copynumber: 3.8 Consensus size: 61
3690911 CCTTCTTTTC
* * * *
3690921 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTTAAAGAGTAGGACGCCTTTT
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGATGCC-TTT
* *
3690983 CCTTTCAAAGCCCACACAAGTTGGTGGCATTTTTC-AGTCCTCAAAGAGCATGATG-CTTT
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGATGCCTTT
* * * *
3691042 CTCTTTGTAAAGCCCACACAAGTTAGTGGCAC-CTTCGAGTCCTCAAAGAGCAGGATGCCTTT
1 C-CTTT-CAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGATGCCTTT
* * *
3691104 CCTTTTCAAAGCCCACACGAGATGGTGACACTTTT-TAGTCCTCAAAGAG
1 CC-TTTCAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAG
3691153 TGGGGCGCAC
Statistics
Matches: 146, Mismatches: 18, Indels: 13
0.82 0.10 0.07
Matches are distributed among these distances:
59 4 0.03
60 8 0.05
61 91 0.62
62 43 0.29
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (61 bp):
CCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGATGCCTTT
Found at i:3691144 original size:122 final size:122
Alignment explanation
Indices: 3690917--3691152 Score: 334
Period size: 122 Copynumber: 1.9 Consensus size: 122
3690907 ATTTCCTTCT
* * * * *
3690917 TTTCCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTTAAAGAGTAGGACGCCTTT
1 TTTCCCTTTTAAAGCCCACACAAGTTAGTGGCACTCTTCGAGTCCTCAAAGAGCAGGACGCCTTT
* *
3690982 TCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTTCAGTCCTCAAAGAGCATGATGC
66 TCCTTTCAAAGCCCACACAAGATGGTGACATTTTTCAGTCCTCAAAGAGCATGATGC
* *
3691039 TTTCTCTTTGTAAAGCCCACACAAGTTAGTGGCAC-CTTCGAGTCCTCAAAGAGCAGGATGCC-T
1 TTTCCCTTT-TAAAGCCCACACAAGTTAGTGGCACTCTTCGAGTCCTCAAAGAGCAGGACGCCTT
*
3691102 TTCCTTTTCAAAGCCCACACGAGATGGTGACACTTTTT-AGTCCTCAAAGAG
65 TTCC-TTTCAAAGCCCACACAAGATGGTGACA-TTTTTCAGTCCTCAAAGAG
3691153 TGGGGCGCAC
Statistics
Matches: 101, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
121 5 0.05
122 67 0.66
123 29 0.29
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (122 bp):
TTTCCCTTTTAAAGCCCACACAAGTTAGTGGCACTCTTCGAGTCCTCAAAGAGCAGGACGCCTTT
TCCTTTCAAAGCCCACACAAGATGGTGACATTTTTCAGTCCTCAAAGAGCATGATGC
Found at i:3691206 original size:42 final size:42
Alignment explanation
Indices: 3691141--3691287 Score: 161
Period size: 42 Copynumber: 3.4 Consensus size: 42
3691131 ACACTTTTTA
** * *
3691141 GTCCTCAAAGAGTGGGGCGCACTTTATTTTCCTCTTTCCTTT
1 GTCCTCAAAGAGCAGGACACACTTTATTTTCCTCTTTCCTTT
* * *
3691183 GTCCTCAAAGAGTAGGACACACTTCA-TTCCCTTCTTTTCTCTTTT
1 GTCCTCAAAGAGCAGGACACACTTTATTTTCC-TC-TTTC-C-TTT
* * *
3691228 ATCCTCAAAGAGCAGGACACACTTTATTTTCCTTTTTCTTTT
1 GTCCTCAAAGAGCAGGACACACTTTATTTTCCTCTTTCCTTT
3691270 GTCCTCAAAGAGCAGGAC
1 GTCCTCAAAGAGCAGGAC
3691288 GCATTTCGTT
Statistics
Matches: 88, Mismatches: 12, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
41 4 0.05
42 44 0.50
43 4 0.05
44 5 0.06
45 27 0.31
46 4 0.05
ACGTcount: A:0.21, C:0.27, G:0.15, T:0.37
Consensus pattern (42 bp):
GTCCTCAAAGAGCAGGACACACTTTATTTTCCTCTTTCCTTT
Found at i:3691238 original size:45 final size:42
Alignment explanation
Indices: 3691136--3691317 Score: 159
Period size: 42 Copynumber: 4.2 Consensus size: 42
3691126 TGGTGACACT
** * * * *
3691136 TTTTAGTCCTCAAAGAGTGGGGCGCACTTTATTTTCCTCTTTC
1 TTTTA-TCCTCAAAGAGCAGGACACACTTCATTTTCCTTTTTC
* * *
3691179 CTTTGTCCTCAAAGAGTAGGACACACTTCATTCCCTT-CTTTTCTC
1 TTTTATCCTCAAAGAGCAGGACACACTTCATT---TTCCTTTT-TC
*
3691224 TTTTATCCTCAAAGAGCAGGACACACTTTATTTTCCTTTTTC
1 TTTTATCCTCAAAGAGCAGGACACACTTCATTTTCCTTTTTC
* * * * *
3691266 TTTTGTCCTCAAAGAGCAGGACGCATTTCGTTTTTCTTTTTTC
1 TTTTATCCTCAAAGAGCAGGACACACTTC-ATTTTCCTTTTTC
*
3691309 CTTTATCCT
1 TTTTATCCT
3691318 TAAAAAGTAG
Statistics
Matches: 114, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
42 52 0.46
43 26 0.23
44 4 0.04
45 32 0.28
ACGTcount: A:0.19, C:0.25, G:0.13, T:0.43
Consensus pattern (42 bp):
TTTTATCCTCAAAGAGCAGGACACACTTCATTTTCCTTTTTC
Found at i:3691396 original size:41 final size:40
Alignment explanation
Indices: 3691338--3691436 Score: 112
Period size: 40 Copynumber: 2.4 Consensus size: 40
3691328 GGCGTACTCT
* *
3691338 TTTTCACTTTGTCCTCAAGAAGCAGGAGA-CT-TTCCTTTTCTG
1 TTTTC-CTTTGTCCTCAAGAAGCA--AGACCTATTCC-ATTCTC
* *
3691380 TTTTCCTTTGTCCTCAAGGAGCAAGACCTATTTCATTCTC
1 TTTTCCTTTGTCCTCAAGAAGCAAGACCTATTCCATTCTC
3691420 TTTTCCTTTGTCCTCAA
1 TTTTCCTTTGTCCTCAA
3691437 AAAGTGGGAC
Statistics
Matches: 51, Mismatches: 4, Indels: 6
0.84 0.07 0.10
Matches are distributed among these distances:
39 3 0.06
40 23 0.45
41 20 0.39
42 5 0.10
ACGTcount: A:0.18, C:0.26, G:0.13, T:0.42
Consensus pattern (40 bp):
TTTTCCTTTGTCCTCAAGAAGCAAGACCTATTCCATTCTC
Found at i:3692113 original size:20 final size:20
Alignment explanation
Indices: 3692085--3692178 Score: 120
Period size: 20 Copynumber: 4.7 Consensus size: 20
3692075 TTTGCCCAGA
*
3692085 TGTATCGATACATT-TTGCAT
1 TGTATCGATACATTGCT-CAT
*
3692105 TGTACCGATACATTGCTCAT
1 TGTATCGATACATTGCTCAT
3692125 TGTATCGATACATTGCTCAT
1 TGTATCGATACATTGCTCAT
* *
3692145 TGTATCGATACATT-TTACAA
1 TGTATCGATACATTGCT-CAT
3692165 TGTATCGATACATT
1 TGTATCGATACATT
3692179 CAGGCATTTT
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
19 1 0.01
20 65 0.97
21 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (20 bp):
TGTATCGATACATTGCTCAT
Found at i:3694270 original size:28 final size:28
Alignment explanation
Indices: 3694202--3694270 Score: 102
Period size: 28 Copynumber: 2.5 Consensus size: 28
3694192 TAATCGGGGG
* *
3694202 TACTCTAACCCCGTTATTTCATCAGGGA
1 TACTCCAACCTCGTTATTTCATCAGGGA
**
3694230 TACTCCAGTCTCGTTATTTCATCAGGGA
1 TACTCCAACCTCGTTATTTCATCAGGGA
3694258 TACTCCAACCTCG
1 TACTCCAACCTCG
3694271 GCTTTATATC
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.23, C:0.30, G:0.14, T:0.32
Consensus pattern (28 bp):
TACTCCAACCTCGTTATTTCATCAGGGA
Found at i:3694347 original size:28 final size:28
Alignment explanation
Indices: 3694302--3694356 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
3694292 TTTTTTCATA
* * *
3694302 ATCGGGGGTATTCTAACCCCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTATTTC
*
3694330 ATCGGGGATACTCCAACCCTGTTATTT
1 ATCGGGGATACTCCAACCCCGTTATTT
3694357 TCAAAGGGAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTATTTC
Found at i:3694365 original size:108 final size:109
Alignment explanation
Indices: 3694170--3694454 Score: 350
Period size: 108 Copynumber: 2.6 Consensus size: 109
3694160 ACAGCGTTAA
* *
3694170 ATCTAAAAATATTGTTTTTTCATAATCGGGGGTACTCTAACCCCGTTATTTCATCAGGGATACTC
1 ATCTAAAAATATTATTTTTTCATAATCGGGGGTACTCTAACCCCGTTATTTCATCGGGGATACTC
** * *
3694235 C-AGTCTCGTTATTTCATCAGGGATACTCCAACCTCGGCTTTAT
66 CAACCCTCGTTATTTCATAAGGGATACTCCAACCTCGGCCTTAT
*
3694278 ATCTAAAAATATTATTTTTTCATAATCGGGGGTATTCTAACCCCGTTATTTCATCGGGGATACTC
1 ATCTAAAAATATTATTTTTTCATAATCGGGGGTACTCTAACCCCGTTATTTCATCGGGGATACTC
*
3694343 CAACCCT-GTTATTTTCA-AAGGGATACTTCAACCTCGGCCTTAT
66 CAACCCTCGTTA-TTTCATAAGGGATACTCCAACCTCGGCCTTAT
* * * * * * *
3694386 TTCT--AAATATTCGA-TTTTTCACAATCGGGGATACTCCAGCCCTGTTATTTTCA-AGGGGATA
1 ATCTAAAAATATT--ATTTTTTCATAATCGGGGGTACTCTAACCCCGTTA-TTTCATCGGGGATA
3694447 CTCCAACC
63 CTCCAACC
3694455 TCGATTTCAT
Statistics
Matches: 156, Mismatches: 16, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
106 7 0.04
107 42 0.27
108 99 0.63
109 8 0.05
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.35
Consensus pattern (109 bp):
ATCTAAAAATATTATTTTTTCATAATCGGGGGTACTCTAACCCCGTTATTTCATCGGGGATACTC
CAACCCTCGTTATTTCATAAGGGATACTCCAACCTCGGCCTTAT
Found at i:3694422 original size:79 final size:78
Alignment explanation
Indices: 3694330--3694532 Score: 266
Period size: 79 Copynumber: 2.6 Consensus size: 78
3694320 CCGTTATTTC
* * * *
3694330 ATCGGGGATACTCCAACCCTGTTATTTTCAAAGGGATACTTCAACCTCGGCCTT-A-TTTCTAAA
1 ATCGGGGATACTCCAACCCTGTTATTTTCAAGGGGATACTCCAACCTC-GACTTCATTTTCAAAA
*
3694393 TATTCGATTTTTCACA
65 TACT-GATTTTT-ACA
* *
3694409 ATCGGGGATACTCCAGCCCTGTTATTTTCAAGGGGATACTCCAACCTCGATTTCATTTTCAAAAT
1 ATCGGGGATACTCCAACCCTGTTATTTTCAAGGGGATACTCCAACCTCGACTTCATTTTCAAAAT
*
3694474 ACTGATTTTTATA
66 ACTGATTTTTACA
* * *
3694487 ATCAGGGACACTCCAACCCTGTTATTTTCGAGGGGATACTCCAACC
1 ATCGGGGATACTCCAACCCTGTTATTTTCAAGGGGATACTCCAACC
3694533 CCGATTTTAT
Statistics
Matches: 110, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
78 47 0.43
79 53 0.48
80 10 0.09
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.33
Consensus pattern (78 bp):
ATCGGGGATACTCCAACCCTGTTATTTTCAAGGGGATACTCCAACCTCGACTTCATTTTCAAAAT
ACTGATTTTTACA
Found at i:3694560 original size:78 final size:78
Alignment explanation
Indices: 3694334--3694546 Score: 266
Period size: 78 Copynumber: 2.7 Consensus size: 78
3694324 TATTTCATCG
* * *** *
3694334 GGGATACTCCAACCCTGTTATTTTCAAAGGGATACTTCAACCTCGGCCTTATTTCTAAATATTCG
1 GGGATACTCCAACCCTGTTATTTTCAAGGGGATACTCCAACCTCGATTTTATTTCTAAATA-CCG
*
3694399 ATTTTTCACAATCG
65 ATTTTTCACAATCA
* * * *
3694413 GGGATACTCCAGCCCTGTTATTTTCAAGGGGATACTCCAACCTCGATTTCATTTTCAAAATACTG
1 GGGATACTCCAACCCTGTTATTTTCAAGGGGATACTCCAACCTCGATTTTA-TTTCTAAATACCG
*
3694478 ATTTTT-ATAATCA
65 ATTTTTCACAATCA
* * *
3694491 GGGACACTCCAACCCTGTTATTTTCGAGGGGATACTCCAACCCCGATTTTATTTCT
1 GGGATACTCCAACCCTGTTATTTTCAAGGGGATACTCCAACCTCGATTTTATTTCT
3694547 GGAACACCAA
Statistics
Matches: 115, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
77 4 0.03
78 51 0.44
79 51 0.44
80 9 0.08
ACGTcount: A:0.26, C:0.24, G:0.15, T:0.35
Consensus pattern (78 bp):
GGGATACTCCAACCCTGTTATTTTCAAGGGGATACTCCAACCTCGATTTTATTTCTAAATACCGA
TTTTTCACAATCA
Found at i:3695425 original size:20 final size:20
Alignment explanation
Indices: 3695380--3695431 Score: 70
Period size: 19 Copynumber: 2.6 Consensus size: 20
3695370 GTAGCCAAAC
* **
3695380 TTGTATCGATACACCAAGTA
1 TTGTATCGATACACAAAAAA
3695400 -TGTATCGATACACAAAAAA
1 TTGTATCGATACACAAAAAA
3695419 TTGTATCGATACA
1 TTGTATCGATACA
3695432 TTGGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 16 0.57
20 12 0.43
ACGTcount: A:0.40, C:0.17, G:0.13, T:0.29
Consensus pattern (20 bp):
TTGTATCGATACACAAAAAA
Found at i:3698979 original size:952 final size:951
Alignment explanation
Indices: 3696709--3703241 Score: 7387
Period size: 952 Copynumber: 6.9 Consensus size: 951
3696699 CGTAGCGACA
* * * * * * *
3696709 ATTAGAATGAGTATTCAAGTTAGTCTTATTTAAGAGACAAACTTTGATTCTAT-GAAAACTGGT-
1 ATTAGTATGAGTATTCAGGTTTGTCTTATTTATGAGTCAAACTTCGATTCTATCAAAAAC-GGTG
* * *
3696772 GAAAGAAAAGCTTCTCCTGTGACACCAAAGCATC-ATGTCATGTATCCTAAAGAA-AGGAATGTG
65 GAAAGAAAAGCTTTTACTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGA-GAATGTG
* * * * * * * *
3696835 TTTTTGGTTCCTAATCTTGAAAAGAATGGAGAATGTTATGAGAATTGAAGCTTTTCTTTTTTAAG
129 TTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCGAGGCTTGTCTTATTTAAG
* * * * * * * *
3696900 GTATGAAGTTTGATTTAAAGGAAAATAGGGTAGAGAAAATATTTCCATGCTAAAGAAAATCATCA
194 GTATGAACTTTGATTTAAAGGAAAATACGGAAAAGAAAAGATTTTCATGCAAAAGAAAATCTTCA
* * * * * *
3696965 ATATCGTTTATGCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAT
259 GTATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAGTGTAGATCAT
** * * * * * *
3697030 TTCTAGAATCCATGTTTGCCTTATTTGAGGCATGAACTTGGACTTTACTAAAATTGGTTGGAAAA
324 TAGTAGAATCCATGTTTGTCTCATTTGACGCACGAACTTAGACTTTACAAAAATTGG-TGGAAAA
* *
3697095 AA-GCCTTTCTTGTGAAACCAAAGCATCAATAT-GATGTATCCTAATGAGAAGACTATGTTTATG
388 AATGCCTTTCTTGCGAAACCAAACCATCAATATCG-TGTATCCTAATGAGAAGACTATGTTTATG
* * * * * * * *
3697158 GTGCCTAATCCTGAAAAGAATGGGGATTGGTATGAGTATTTC-GGTTTGTATTGTTTAAGAGATA
452 GTGCCTAATCTTGAAAAGAATAGGGATTAGTATGAGTA-TTCATGTTTGTCTTATATAAGAGACA
* **
3697222 AACTTTGATT-TCATCAAAAAC-AGTGGAAAGAAAAGCTTTTCCTATGACACCAAAG-ATCAATG
516 AACTTTGATTCT-ATCAAAAACGA-TGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATG
* * * * * * * * **
3697284 TCATGTATTCTAATAAAGGGAAAGTGTTTTTGG-ATCCCAATTTTGAAAAGAATAGAGACTCTTA
579 TCATGTATCCTAATGAAGAGAATGCG-TTTTGGCTTCCCAATCTTGAAAAGAATGGAGACAGTTA
* * * * * *
3697348 CGAGAATAGATCCTTGTCTTATTTAAAGAATGAACTTTGATTTTAGGGAAAGTAGGGCAAAGAAA
643 CGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGG-AAAGAAA
* * * *
3697413 AGAGTTT-CATGCTAAAAAAAATCATCAATATCTTTTATCCTAATGAGGAGAATGTGTTCATAGT
707 ATA-TTTCCATGCAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGT
* * *
3697477 GCCTAATCACAAAATGATTGAAGATCATTACTAGAAACCATGTTTGTCTCATTTGAGGCACGAAC
771 GCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAAC
* * * * * *
3697542 TTAGATTTTACAAAAATTGGTTGGAAAAAAGCCTTT-TAG--AAACCAAAGCATCAATATGATGT
836 TTAGACTTTAAAAAAATTAGTAGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGT
* * * * * *
3697604 ATCTTAATGAGAAGACTATGTTTATGGTGCCCAATACTAAAAAGAATGAGG
901 ATCCTAAAGAGAAGACTATGTTTATGGTACCTAATCCTAAAAAGAATGGGG
* * * * * * * * * *
3697655 ATTAGTATCAATATTCAAGTTTGTCTTGTTCAAGAGACAAACTTTGATTCTATGAAAAATGGT-G
1 ATTAGTATGAGTATTCAGGTTTGTCTTATTTATGAGTCAAACTTCGATTCTATCAAAAACGGTGG
* * * * *
3697719 AAAGAAAAGCTTATCCTATGACACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTA
66 AAAGAAAAGCTTTTACTGTG--ACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTG
* *
3697784 TTTTTGATT--C--TC-------------A-A-TATTACGAGAATCGAGGCTTGTCTTATTTATG
129 TTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCGAGGCTTGTCTTATTTAAG
* * * * *
3697830 ATATGAACTTTGATTTCAAGGAAAATAAGGCAAAA-AAAAGATTTCCATGCAAAAGAAAATCATC
194 GTATGAACTTTGATTTAAAGGAAAATACGG-AAAAGAAAAGATTTTCATGCAAAAGAAAATCTTC
* * **
3697894 ACTATCATTTATCCTAATAAAAAGAATGTGTTTATAGTGCCTAATCACAAAATGAGTGTAGATCA
258 AGTATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAGTGTAGATCA
* * * * * *
3697959 CTAGTAGAATCCATGGTTGTCTCATTTGAGGCACGAATTTAGACTTTACAAAAATTGATGGGAAA
323 TTAGTAGAATCCATGTTTGTCTCATTTGACGCACGAACTTAGACTTTACAAAAATTGGTGGAAAA
* *
3698024 AATGCCTTTCTTGCAAAACCAAACCATCAATATCGTGTATCCAAATGAGAAGACTATGTTTATGG
388 AATGCCTTTCTTGCGAAACCAAACCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGG
* * * *
3698089 TGCCTAATCTTGATAAGAATAGGGATTAGTATGAGTATTCATGTTTATCTTCTATTAGAGACAAA
453 TGCCTAATCTTGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTATATAAGAGACAAA
* * * * *
3698154 CTTTGAATCCATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGAATCAATGTCAT
518 CTTTGATTCTATCAAAAACGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAT
* * * * ** *
3698219 GTATCCTATTGAAGAGAATGTGTTTTAGCTTCCCAATCTTAAAAAGAATGGAGACAGTTAAAAAA
583 GTATCCTAATGAAGAGAATGCGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACAGTTACGAGA
*
3698284 ATCGATGCTTGTCTTCTTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGGAAAGAAAATTAT
648 ATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT-AGGGAAAGAAAA-TAT
* * * * *
3698349 TTCCATGCTATAGAAAATCATCAATATCATTTATCCTAACGAGGAGAATGTGTTTCTAGTGCCTA
711 TTCCATGCAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* *
3698414 ATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGTACAAACTTAGA
776 ATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGA
* * * *
3698479 CTTTAAAAAAATTGGTAGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAAAATTATGGATCCT
841 CTTTAAAAAAATTAGTAGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCT
* * *
3698544 AAAGAGAAGACTATGTTTATGGTACCTAATCTTGAACAGAAT-GGG
906 AAAGAGAAGACTATGTTTATGGTACCTAATCCTAAAAAGAATGGGG
* * * * *
3698589 ATTAGTATGAGTATTTAGGTTTCTCTGATTTATCAGTCAAACTTCGATTCTATCAAAAAGGGTGG
1 ATTAGTATGAGTATTCAGGTTTGTCTTATTTATGAGTCAAACTTCGATTCTATCAAAAACGGTGG
* * * * *
3698654 AAAGAAAGGATTTTACTATGACACCAAAGCATCAATGTCAAGTATCCTAATGAAGGGAATGTGTT
66 AAAGAAAAGCTTTTACTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTT
* * * * * *
3698719 TTTGGTTCCTAATCATGAATAGAATGGAGACTACTACGAGAATCGAGGCTTCTCTTGTTTAAGGT
131 TTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCGAGGCTTGTCTTATTTAAGGT
** * * * *
3698784 AAAAACTTTCATTTAAAGGCAAATACGAAAAAGAAAAGATTTTCATGCAAAAAAAAATCTTCAGT
196 ATGAACTTTGATTTAAAGGAAAATACGGAAAAGAAAAGATTTTCATGCAAAAGAAAATCTTCAGT
*
3698849 ATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAGAATGAGTGTAGATCATTA
261 ATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAGTGTAGATCATTA
* *
3698914 GTAGAATCAATGTTTGTCTCATTTGACGCACGAATTTAGACTTTACAAAAATTGGTGGAAAAAAT
326 GTAGAATCCATGTTTGTCTCATTTGACGCACGAACTTAGACTTTACAAAAATTGGTGGAAAAAAT
* * ** * *
3698979 GCTTTTTTTATGAAACCAAACCATCAATATAGTGTATCCTAATGAGAAAACTATGTTTATGGTGC
391 GCCTTTCTTGCGAAACCAAACCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGC
* *
3699044 CTAACCTTGAAAAGAATAGGGATTAGTATGAGTATTTATGTTTGTCTTATATAAGAGACAAACTT
456 CTAATCTTGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTATATAAGAGACAAACTT
* * * * * *
3699109 TGAATTC-ATCAAAAATGGTGGAAAGAAAAGCTTTTCTTACAACACTAAAGAATCAATGTCATGT
521 TG-ATTCTATCAAAAACGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGT
* * *
3699173 ATCCTAATGAAGAGAATACGTTTTGGCTTCCTAATCTTGAAAAGAATGGAGACTGTTACGAGAAT
585 ATCCTAATGAAGAGAATGCGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACAGTTACGAGAAT
* *
3699238 CGATACTTGTC---TTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGGGAAAGAAAATATTTC
650 CGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATA-GGGAAAGAAAATATTTC
* * * * * *
3699300 CATGCTATAAAAAATCATCAATATAATTTATCTTAATGAGGAGAATGTGTTTATAGTGCTTATTC
714 CATGCAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC
* * *
3699365 ACAAAATGAATGAAGACCATTACTAGAATCCATGTTTGTCTTATTTGAGGTACAAACTTAGACTT
779 ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTT
* * ** * *
3699430 TACAAAAATT-GAAGGGAAAAAA-CCTTTCTTGTGAAACCAAAGCATCAAAATTATGTATCCTAA
844 TAAAAAAATTAGTA-GGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAA
* * *
3699493 AGAGAAGGCTAGGTTTATGGTGCCTAATCCTAAAAAGAAT-GGG
908 AGAGAAGACTATGTTTATGGTACCTAATCCTAAAAAGAATGGGG
* * * *
3699536 ATTAGTATAAGTATTCAGGTTTGTCTGATTTGTGAGTC-GACTTCGA-TCTATCAAAAACGGTGG
1 ATTAGTATGAGTATTCAGGTTTGTCTTATTTATGAGTCAAACTTCGATTCTATCAAAAACGGTGG
* * *
3699599 AAAGAAAGGATTTTACTATGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGT-TC
66 AAAGAAAAGCTTTTACTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGT-
* * * * *
3699663 TTTTGGCTCCCAATCTTGAAAAGAATAGAGACTGTTACGAGAATCGAGGCTTGTCTTGTCTAAGG
130 TTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCGAGGCTTGTCTTATTTAAGG
* * * *
3699728 TATGAACATTGATTTAAAGGCAAATAC-GAAAATGAAAACATTTTCATGCAAAAGAAAATCTTTA
195 TATGAACTTTGATTTAAAGGAAAATACGGAAAA-GAAAAGATTTTCATGCAAAAGAAAATCTTCA
3699792 GTATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAGTGTAGATCAT
259 GTATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAGTGTAGATCAT
* * * **
3699857 TAGTAGAATCAATATTTGTCTTATTTGATACACGAACTTAGACTTTACAAAAATTGGTGGAAAAA
324 TAGTAGAATCCATGTTTGTCTCATTTGACGCACGAACTTAGACTTTACAAAAATTGGTGGAAAAA
* * ** *
3699922 ATACCTTTCTTGCAAAACCAAACCATCAATAGAGTGTATCCTAATGAGAAGACTGTGTTTATGGT
389 ATGCCTTTCTTGCGAAACCAAACCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGT
* *
3699987 GCCTAATCTTGAAAAGAAT-GTGGATTAGTATGTGTATTCATGTTTGCCTTATATAAGAGACAAA
454 GCCTAATCTTGAAAAGAATAG-GGATTAGTATGAGTATTCATGTTTGTCTTATATAAGAGACAAA
* * ** * *
3700051 CTTTGATTCTATCAAAAACGATAGAAAGAAAAGCTTTTTTTATGACACTAAAGCATCAATGTTAT
518 CTTTGATTCTATCAAAAACGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAT
** * * * *
3700116 GTATCCTAGCGAAGGGATTGTGTTTTTGG-TTCCCAATCTTGAAAAGAATGGAGACTA-TTACGT
583 GTATCCTAATGAAGAGAATGCG-TTTTGGCTTCCCAATCTTGAAAAGAATGGAGAC-AGTTACGA
3700179 GAATCGATGCTTGTCTTATTTAACGGG-TGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAT
646 GAATCGATGCTTGTCTTATTTAA-GGGATGAACTTTGATTTTAAGGAAAATAGGG-AAAGAAAAT
*** * *
3700243 ATTTTGGTGCAAAAGAAAATCATCAATGTCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
709 ATTTCCATGCAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* * * * *
3700308 TAATCACAAAATGAATCAAGATCATTTCTAGAATCCAAGTTTGACTTATTTGAGGCACAAACTTA
774 TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTA
* * * *** *
3700373 GACTTTACAAAAATTAGTGGGAAAAAAGACTTTTCTTGCGGTACCAAAGCATCAATATCGTGTAT
839 GACTTTAAAAAAATTAGTAGGAAAAAAG-CCTTTCTTGCAAAACCAAAGCATCAATATCATGTAT
* *
3700438 CCTAATGAGAAGGA-TATGTTTATGGTGCCTAATCCTAAAAAGAATGGGG
903 CCTAAAGAGAA-GACTATGTTTATGGTACCTAATCCTAAAAAGAATGGGG
* * *
3700487 ATTAGTATGAGTATTCAGGTTTGTCTTAGTTAAGTGA-T-AAACTTTGATTCTATCAAAAATGGT
1 ATTAGTATGAGTATTCAGGTTTGTCTTA-TTTA-TGAGTCAAACTTCGATTCTATCAAAAACGGT
3700550 GGAAAGAAAAGCTTTT-CTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGT
64 GGAAAGAAAAGCTTTTAC-TGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGT
* *
3700614 GTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCAAGGCCTGTCTTATTTAA
128 GTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCGAGGCTTGTCTTATTTAA
* * * * * * *
3700679 GGTATGAACTTTGATTTCAAGGAAGATAGGGCAAAGAAAAGATTTTCGTACAAAAGAAAATTTTC
193 GGTATGAACTTTGATTTAAAGGAAAATACGGAAAAGAAAAGATTTTCATGCAAAAGAAAATCTTC
* *
3700744 AGTATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCCAATCACAAAATGAGTGTTA-ATC
258 AGTATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAGTG-TAGATC
* * * *
3700808 ATTAGTAGAAACCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGATTGG-A
322 ATTAGTAGAATCCATGTTTGTCTCATTTGACGCACGAACTTAGACTTTACAAAAATTG-GTGGAA
* * * * *
3700872 AAAATGCCTTTTTTGCGAAACCAAACCATTAATATCAG-GTATCCAAATGAGAAGACTGTGTTTG
386 AAAATGCCTTTCTTGCGAAACCAAACCATCAATATC-GTGTATCCTAATGAGAAGACTATGTTTA
* * * *
3700936 TGGTGCCTAATGTTGAAAAGAATGGTGGCTT-GTATGACTATT-ATGTTTGTCTTATATAAGAGA
450 TGGTGCCTAATCTTGAAAAGAATAG-GGATTAGTATGAGTATTCATGTTTGTCTTATATAAGAGA
* * * * *
3700999 CAAACTTTGATTCTATTAAAAACAATAGAAAGAAAAGTTTTTCTTGCGACACCAAAGCATCATTG
514 CAAACTTTGATTCTATCAAAAACGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATG
* * *
3701064 TCATGTATCCTAATGAAGAGAATGCATTTTGGCTTCCTAATCTTGAAAAGAATGGGGACTA-TTA
579 TCATGTATCCTAATGAAGAGAATGCGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGAC-AGTTA
* * * *
3701128 CGAGAATTGGTGCTTGTCTTCTTTCAGGGATGAACTTTGATTTTAAGGAAAATAGGAGAAAGAAA
643 CGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGG-GAAAGAAA
* * * * *
3701193 AGATTTCCATGCAAAAGAAAATCATTAATATCATTTATCATAATGAGGAGAATGTGTTTGTAGTG
707 ATATTTCCATGCAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTG
* * * *
3701258 CTTAATCAGAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGAGGCACGAACT
772 CCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACT
* * * * * * ** * * *
3701323 TAAGACTTCAGAAAAGTTGGTGGGAGAATTGCCTTTCTTGCAACAGCAAAACAGT-AATATCATG
837 T-AGACTTTAAAAAAATTAGTAGGAAAAAAGCCTTTCTTGCAAAACCAAAGCA-TCAATATCATG
* * * *
3701387 TATCCTAATGAGAAGACTATGTTTATGGCACCTAATCCTAAAAAGAGTAGGG
900 TATCCTAAAGAGAAGACTATGTTTATGGTACCTAATCCTAAAAAGAATGGGG
* * * * * *
3701439 ATTAGTATTAGTATTCAAGTTTATCTTAATTATGAGACAAACATT-GATTCTATC-AAAACGGTT
1 ATTAGTATGAGTATTCAGGTTTGTCTTATTTATGAGTCAAAC-TTCGATTCTATCAAAAACGGTG
* * * *
3701502 GAAAGAAAAGCTTTTATTGTGACACCAAAGCATCAATGCCATGTATCCTAATGAAGGGAGTGTTG
65 GAAAGAAAAGCTTTTACTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATG-TG
* * * * *
3701567 TTTTTGGTTTCCAATCTTAAAAAGACTGGAGACTGA-TATGA-AAGTCGAGGCTTATCTTATTTA
129 TTTTTGGTTCCCAATCTTGAAAAGAATGGAGACT-ATTACGAGAA-TCGAGGCTTGTCTTATTTA
* * * * *
3701630 AGGGATGAACTTTTATTTTATAA--AAAAT-CGGGCAAAGAAAAGGTTTTCATTC--AAGAAGAA
192 AGGTATGAACTTTGA-TTTA-AAGGAAAATAC-GGAAAAGAAAAGATTTTCATGCAAAAGAA-AA
* * * * *
3701690 TCATT-AATATCATTTATCCTAATGAGGAGAATGTGTTTGTAATGCCTAATCACAAAATGAATGA
253 TC-TTCAGTATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAGTGT
* * * * * *
3701754 AGATCGTTACTAGAATCCGTGTTTGTCTCATTTGA-GATATGAACTTATACTTTACAAAAATTGG
317 AGATCATTAGTAGAATCCATGTTTGTCTCATTTGACG-CACGAACTTAGACTTTACAAAAATTGG
* * * * *
3701818 TTGAAAAAA-GTCTTTTCTTGTGAAACCAAAGCATCAATAT-GAT-TGATGCTAATGAGAAGACT
381 TGGAAAAAATG-CCTTTCTTGCGAAACCAAACCATCAATATCG-TGT-ATCCTAATGAGAAGACT
* * * * * * * * *
3701880 ATGTTTAAGGTGCCTAATCTTAAAAAAAATAGGGACTAGTATGAGTCTTCAGGCTGGTCTTATTT
443 ATGTTTATGGTGCCTAATCTTGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTATAT
* * * * * * * *
3701945 ATGAGACCAACTTTGATTTTATCAAAAACGATGGAAACAAAAACTTTTAC-TGTGACACTAGAGC
508 AAGAGACAAACTTTGATTCTATCAAAAACGATGGAAAGAAAAGCTTTT-CTTGCGACACCAAAGC
* * * * *
3702009 ATCAATGTCATGTATCCTAATAAAGAGAATGTGTTTTTAG-TTCTCAATCTTCAAAAGAATGGAG
572 ATCAATGTCATGTATCCTAATGAAGAGAATGCG-TTTTGGCTTCCCAATCTTGAAAAGAATGGAG
* * * * *
3702073 ACTGTTACGAGGATCGAAGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAAGGC
636 ACAGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT-AGGG
* * * * *
3702138 AAACAACAGAATTCGATGCAAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGT
700 AAAGAAAATATTTCCATGC-AAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGT
* * * * *
3702203 TTATATTGCCTAATCACAAAATGAGTGTAGATCATTAGTAGAATCCATGTTTGTCTCATTTGACG
764 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGG
* * * *
3702268 CACGAACTT-GACTTTATAAAAATTAGTCA--AAAAAATGCCTTTCTCGCAAAACCAAACCATCA
829 CACAAACTTAGACTTTAAAAAAATTAGT-AGGAAAAAA-GCCTTTCTTGCAAAACCAAAGCATCA
* * * *
3702330 ATATCGT-TGATCCTAAAGAGAAGACTATGTTTATGGCACCTAATCTTGAAAAGAATGGGG
892 ATATCATGT-ATCCTAAAGAGAAGACTATGTTTATGGTACCTAATCCTAAAAAGAATGGGG
* * * * * * *
3702390 ATTAGTATGACTATTCATGTTTGTCTTATATAAGAGACAAACTTTGATTTTATCAAAAACGGTGG
1 ATTAGTATGAGTATTCAGGTTTGTCTTATTTATGAGTCAAACTTCGATTCTATCAAAAACGGTGG
* ** * *
3702455 AAAGAAAAGCTTTTCCTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGATTGCG-T
66 AAAGAAAAGCTTTTACTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTT
* * *
3702519 TTTGGCTTCCCAAT-TTGGAAATGAAT-AAGGACTATTACGAGAATCGATGCTTGTCTTATTTAA
131 TTTGG-TTCCCAATCTT-GAAAAGAATGGA-GACTATTACGAGAATCGAGGCTTGTCTTATTTAA
* * * * ** * * * ** *
3702582 GGGATGAACTTTGATTTTACGAAAAATTGGGCAAAGAAAAGATTTCCTTGTGAAAGAAAATCATC
193 GGTATGAACTTTGATTTAAAGGAAAATACGGAAAAGAAAAGATTTTCATGCAAAAGAAAATCTTC
* * * *
3702647 AATACCATTTATCCTAATGAGGAGAATGTTTTTATAGTGCCTAATCATAAAATGAGTGTAGATCA
258 AGTATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAGTGTAGATCA
* ** * * *
3702712 TTAGTATAATCTGTGTTTGTCACATTTGACTCACGAACTTACACTTTACAAAAATTGGT-GAGAA
323 TTAGTAGAATCCATGTTTGTCTCATTTGACGCACGAACTTAGACTTTACAAAAATTGGTGGA-AA
* *
3702776 AAATGCCTTTCTTGCGATACCAAACCATCAATATCGTGTATCCTAATGAGAAGATTATGTTTATG
387 AAATGCCTTTCTTGCGAAACCAAACCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATG
* * * * *
3702841 GTGCCTAATCTTGAAAAGAATGGGGATTGGTATGAGTATTCGTATTTATCTTATATAAGAGACAA
452 GTGCCTAATCTTGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTATATAAGAGACAA
* * * *
3702906 ACTTTGATTCTATC-AAAATGGTGGAACGAAAAGCTTTTCTTGCGATACCAAAGCATCAATGTCA
517 ACTTTGATTCTATCAAAAACGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCA
* * * * * * * ** *
3702970 TGTATTCTAATGATGAGCATGCATTTTGGCTTCCTAATCTAGAAAACAAT-GAGGACTTTTATGA
582 TGTATCCTAATGAAGAGAATGCGTTTTGGCTTCCCAATCTTGAAAAGAATGGA-GACAGTTACGA
* * ** * * * * * *
3703034 GAATCAATGCTTATCTTATTTAAAAGATGAACCTTGATTTTACGAAAAATTGGGCGAAGAAAAAA
646 GAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGG-AAAGAAAATA
* * * * *
3703099 TTTTCATGTAGAAAAAAATAATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCT
710 TTTCCATGCAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
* * * **
3703164 AATCATC-AAATGAATGAAGATCATTACTAGAATCTATATTTGTCTCATTTAAGGCATGAACTTA
775 AATCA-CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTA
3703228 GACTTTAAAAAAAT
839 GACTTTAAAAAAAT
3703242 GGTGGGAGAA
Statistics
Matches: 4775, Mismatches: 682, Indels: 255
0.84 0.12 0.04
Matches are distributed among these distances:
929 11 0.00
930 336 0.07
931 111 0.02
932 150 0.03
933 51 0.01
934 51 0.01
935 76 0.02
937 2 0.00
944 10 0.00
945 535 0.11
946 82 0.02
947 117 0.02
948 330 0.07
949 81 0.02
950 222 0.05
951 652 0.14
952 1405 0.29
953 534 0.11
954 19 0.00
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.32
Consensus pattern (951 bp):
ATTAGTATGAGTATTCAGGTTTGTCTTATTTATGAGTCAAACTTCGATTCTATCAAAAACGGTGG
AAAGAAAAGCTTTTACTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTT
TTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCGAGGCTTGTCTTATTTAAGGT
ATGAACTTTGATTTAAAGGAAAATACGGAAAAGAAAAGATTTTCATGCAAAAGAAAATCTTCAGT
ATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAGTGTAGATCATTA
GTAGAATCCATGTTTGTCTCATTTGACGCACGAACTTAGACTTTACAAAAATTGGTGGAAAAAAT
GCCTTTCTTGCGAAACCAAACCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGC
CTAATCTTGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTATATAAGAGACAAACTT
TGATTCTATCAAAAACGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTA
TCCTAATGAAGAGAATGCGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACAGTTACGAGAATC
GATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGAAAGAAAATATTTCCA
TGCAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC
AAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTA
AAAAAATTAGTAGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAAAGA
GAAGACTATGTTTATGGTACCTAATCCTAAAAAGAATGGGG
Found at i:3700218 original size:476 final size:474
Alignment explanation
Indices: 3697798--3703255 Score: 6110
Period size: 476 Copynumber: 11.5 Consensus size: 474
3697788 TGATTCTCAA
* * ** *
3697798 TATTACGAGAATCGAGGCTTGTCTTATTTATGATATGAACTTTGATTTCAAGGAAAATAAGGCAA
1 TATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT-AGGCAA
* * * * **
3697863 AAAAAAGATTTCCATGCAAAAGAAAATCATCACTATCATTTATCCTAATAAAAAGAATGTGTTTA
65 AGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
* * * * *
3697928 TAGTGCCTAATCACAAAATGAGTGTAGATCACTAGTAGAATCCATGGTTGTCTCATTTGAGGCAC
130 TAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAC
* * * * *
3697993 GAATTTAGACTTTACAAAAATTGATGGGAAAAATGCCTTTCTTGCAAAACCAAACCATCAATATC
195 GAACTTAGACTTTACAAAAATTGGTGGAAAAAATGCCTTTCTTGCGAAACCAAACCATCAATATA
* *
3698058 GTGTATCCAAATGAGAAGACTATGTTTATGGTGCCTAATCTTGATAAGAATAGGGATTAGTATGA
260 GTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAAT-GGGATTAGTATGA
* * * * * *
3698123 GTATTCATGTTTATCTTCTATTAGAGACAAACTTTGAATCCATCAAAAATGGTGGAAAGAAAAGC
324 GTATTCATGTTTGTCTTATATAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGC
* * * * *
3698188 TTTTCTTGCGACACCAAAGAATCAATGTCATGTATCCTATTGAAGAGAATGTGTTTTAGCTTCCC
389 TTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGTTCCC
*
3698253 AATCTTAAAAAGAATGGAGAC
454 AATCTTGAAAAGAATGGAGAC
** * * *
3698274 -AGTTAAAAAAATCGATGCTTGTCTTCTTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGGA
1 TA-TTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT-AGGCA
* * * * *
3698338 AAGAAAATTATTTCCATGCTATAGAAAATCATCAATATCATTTATCCTAACGAGGAGAATGTGTT
64 AAGAAAA-GATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTT
* * *
3698403 TCTAGTGCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGT
128 TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGC
* * * * *
3698468 ACAAACTTAGACTTTAAAAAAATTGGTAGGAAAAAA-GCCTTTCTTGCAAAACCAAAGCATCAAA
193 ACGAACTTAGACTTTACAAAAATTGGT-GGAAAAAATGCCTTTCTTGCGAAACCAAACCATCAAT
* * * *
3698532 ATTA-TGGATCCTAAAGAGAAGACTATGTTTATGGTACCTAATCTTGAACAGAATGGGATTAGTA
257 A-TAGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGATTAGTA
* * * * * ** * * *
3698596 TGAGTATTTAGGTTTCTCTGATTTATCAGTCAAACTTCGATTCTATCAAAAAGGGTGGAAAGAAA
321 TGAGTATTCATGTTTGTCTTATATAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAA
* * * * *
3698661 GGATTTTAC-TATGACACCAAAGCATCAATGTCAAGTATCCTAATGAAGGGAATGTGTTTTTGGT
386 AGCTTTT-CTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGT
* * *
3698725 TCCTAATCATGAATAGAATGGAGAC
450 TCCCAATCTTGAAAAGAATGGAGAC
* * * * * ** * * * **
3698750 TACTACGAGAATCGAGGCTTCTCTTGTTTAAGGTAAAAACTTTCATTTAAAGGCAAATACGAAAA
1 TATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATA-GGCAA
* * *
3698815 AGAAAAGATTTTCATGCAAAAAAAAATCTTCAGTATCATTTATCCTAATGAGGAGAATGTGTTTA
65 AGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
* * * * * *
3698880 TAGTGCCTAATCACAGAATGAGTGTAGATCATTAGTAGAATCAATGTTTGTCTCATTTGACGCAC
130 TAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAC
* * * **
3698945 GAATTTAGACTTTACAAAAATTGGTGGAAAAAATGCTTTTTTTATGAAACCAAACCATCAATATA
195 GAACTTAGACTTTACAAAAATTGGTGGAAAAAATGCCTTTCTTGCGAAACCAAACCATCAATATA
* *
3699010 GTGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAACCTTGAAAAGAATAGGGATTAGTATGA
260 GTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAAT-GGGATTAGTATGA
* *
3699075 GTATTTATGTTTGTCTTATATAAGAGACAAACTTTGAATTC-ATCAAAAATGGTGGAAAGAAAAG
324 GTATTCATGTTTGTCTTATATAAGAGACAAACTTTG-ATTCTATCAAAAACGGTGGAAAGAAAAG
*** * * **
3699139 CTTTTCTTACAACACTAAAGAATCAATGTCATGTATCCTAATGAAGAGAATACG-TTTTGGCTTC
388 CTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGG-TTC
*
3699203 CTAATCTTGAAAAGAATGGAGAC
452 CCAATCTTGAAAAGAATGGAGAC
* * * *
3699226 TGTTACGAGAATCGATACTTGTC---TTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGGGAA
1 TATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATA-GGCAA
* * * * *
3699288 AGAAAATATTTCCATGCTATAA-AAAATCATCAATATAATTTATCTTAATGAGGAGAATGTGTTT
65 AGAAAAGATTTTCATGC-AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTT
* * * * *
3699352 ATAGTGCTTATTCACAAAATGAATGAAGACCATTACTAGAATCCATGTTTGTCTTATTTGAGGTA
129 ATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCA
* * * *
3699417 CAAACTTAGACTTTACAAAAATTGAAG-GGAAAAAA--CCTTTCTTGTGAAACCAAAGCATCAAA
194 CGAACTTAGACTTTACAAAAATTG--GTGGAAAAAATGCCTTTCTTGCGAAACCAAACCATCAAT
* * * * *
3699479 ATTA-TGTATCCTAAAGAGAAGGCTAGGTTTATGGTGCCTAATCCTAAAAAGAATGGGATTAGTA
257 A-TAGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGATTAGTA
* * * * ** * * *
3699543 TAAGTATTCAGGTTTGTCTGATTTGTGAGTC-GACTTCGA-TCTATCAAAAACGGTGGAAAGAAA
321 TGAGTATTCATGTTTGTCTTATATAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAA
* * *
3699606 GGATTTTAC-TATGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGT-TCTTTTGG
386 AGCTTTT-CTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGT-TTTTGG
* *
3699669 CTCCCAATCTTGAAAAGAATAGAGAC
449 TTCCCAATCTTGAAAAGAATGGAGAC
* * * * * * * * * *
3699695 TGTTACGAGAATCGAGGCTTGTCTTGTCTAAGGTATGAACATTGATTTAAAGGCAAATACGAAAA
1 TATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGCAAA
* * * *
3699760 TGAAAACATTTTCATGCAAAAGAAAATCTTTAGTATCATTTATCCTAATGAGGAGAATGTGTTTA
66 -GAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
* * * * * * **
3699825 TAGTGCCTAATCACAAAATGAGTGTAGATCATTAGTAGAATCAATATTTGTCTTATTTGATACAC
130 TAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAC
* * *
3699890 GAACTTAGACTTTACAAAAATTGGTGGAAAAAATACCTTTCTTGCAAAACCAAACCATCAATAGA
195 GAACTTAGACTTTACAAAAATTGGTGGAAAAAATGCCTTTCTTGCGAAACCAAACCATCAATATA
* *
3699955 GTGTATCCTAATGAGAAGACTGTGTTTATGGTGCCTAATCTTGAAAAGAATGTGGATTAGTATGT
260 GTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATG-GGATTAGTATGA
* * *
3700020 GTATTCATGTTTGCCTTATATAAGAGACAAACTTTGATTCTATCAAAAACGATAGAAAGAAAAGC
324 GTATTCATGTTTGTCTTATATAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGC
* * * * ** * *
3700085 TTTTTTTATGACACTAAAGCATCAATGTTATGTATCCTAGCGAAGGGATTGTGTTTTTGGTTCCC
389 TTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGTTCCC
3700150 AATCTTGAAAAGAATGGAGAC
454 AATCTTGAAAAGAATGGAGAC
*
3700171 TATTACGTGAATCGATGCTTGTCTTATTTAACGGG-TGAACTTTGATTTTAAGGAAAATAGGGCA
1 TATTACGAGAATCGATGCTTGTCTTATTTAA-GGGATGAACTTTGATTTTAAGGAAAATA-GGCA
* ** *
3700235 AAGAAAATATTTTGGTGCAAAAGAAAATCATCAATGTCATTTATCCTAATGAGGAGAATGTGTTT
64 AAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTT
* * * * *
3700300 ATAGTGCCTAATCACAAAATGAATCAAGATCATTTCTAGAATCCAAGTTTGACTTATTTGAGGCA
129 ATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCA
* * * ** *
3700365 CAAACTTAGACTTTACAAAAATTAGTGGGAAAAAA-GACTTTTCTTGCGGTACCAAAGCATCAAT
194 CGAACTTAGACTTTACAAAAATTGGT-GGAAAAAATG-CCTTTCTTGCGAAACCAAACCATCAAT
* * *
3700429 ATCGTGTATCCTAATGAGAAGGA-TATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGT
257 ATAGTGTATCCTAATGAGAA-GACTATGTTTATGGTGCCTAATCTTGAAAAGAAT-GGGATTAGT
* * * *
3700493 ATGAGTATTCAGGTTTGTCTTAGT-TAAGTGATAAACTTTGATTCTATCAAAAATGGTGGAAAGA
320 ATGAGTATTCATGTTTGTCTTA-TATAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGA
3700557 AAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGG
384 AAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGG
3700622 TTCCCAATCTTGAAAAGAATGGAGAC
449 TTCCCAATCTTGAAAAGAATGGAGAC
* * * * * *
3700648 TATTACGAGAATCAAGGCCTGTCTTATTTAAGGTATGAACTTTGATTTCAAGGAAGATAGGGCAA
1 TATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATA-GGCAA
* * ** * *
3700713 AGAAAAGATTTTCGTACAAAAGAAAATTTTCAGTATCATTTATCCTAATAAGGAGAATGTGTTTA
65 AGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
* * * * *
3700778 TAGTGCCCAATCACAAAATGAGTGTTA-ATCATTAGTAGAAACCATGTTTGTCTCATTTGAGGCA
130 TAGTGCCTAATCACAAAATGAATG-AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCA
* * * *
3700842 TGAACTTAGACTTTACAAAAATTGATTGG-AAAAATGCCTTTTTTGCGAAACCAAACCATTAATA
194 CGAACTTAGACTTTACAAAAATTG-GTGGAAAAAATGCCTTTCTTGCGAAACCAAACCATCAATA
* * * * *
3700906 TCAG-GTATCCAAATGAGAAGACTGTGTTTGTGGTGCCTAATGTTGAAAAGAATGGTGGCTT-GT
258 T-AGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAAT-G-GGATTAGT
* * ** *
3700969 ATGACTATT-ATGTTTGTCTTATATAAGAGACAAACTTTGATTCTATTAAAAACAATAGAAAGAA
320 ATGAGTATTCATGTTTGTCTTATATAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAA
* * * **
3701033 AAGTTTTTCTTGCGACACCAAAGCATCATTGTCATGTATCCTAATGAAGAGAATG-CATTTTGGC
385 AAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGG-
* *
3701097 TTCCTAATCTTGAAAAGAATGGGGAC
449 TTCCCAATCTTGAAAAGAATGGAGAC
* * * * *
3701123 TATTACGAGAATTGGTGCTTGTCTTCTTTCAGGGATGAACTTTGATTTTAAGGAAAATAGGAGAA
1 TATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGG-CAA
* * * *
3701188 AGAAAAGATTTCCATGCAAAAGAAAATCATTAATATCATTTATCATAATGAGGAGAATGTGTTTG
65 AGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
* * *
3701253 TAGTGCTTAATCAGAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGAGGCAC
130 TAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAC
* * * * * * * *
3701318 GAACTTAAGACTTCAGAAAAGTTGGTGGGAGAATTGCCTTTCTTGC-AACAGCAAAACAGT-AAT
195 GAACTT-AGACTTTACAAAAATTGGTGGAAAAAATGCCTTTCTTGCGAA-ACCAAACCA-TCAAT
** * * *
3701381 ATCA-TGTATCCTAATGAGAAGACTATGTTTATGGCACCTAATCCTAAAAAGAGTAGGGATTAGT
257 AT-AGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAAT-GGGATTAGT
* * * * * *
3701445 ATTAGTATTCAAGTTTATCTTA-ATTATGAGACAAACATTGATTCTATC-AAAACGGTTGAAAGA
320 ATGAGTATTCATGTTTGTCTTATA-TAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGA
* * * *
3701508 AAAGCTTTTATTGTGACACCAAAGCATCAATGCCATGTATCCTAATGAAGGGAGTGTTGTTTTTG
384 AAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATG-TGTTTTTG
* * *
3701573 GTTTCCAATCTTAAAAAGACTGGAGAC
448 GTTCCCAATCTTGAAAAGAATGGAGAC
* * * * * *
3701600 TGA-TATGA-AAGTCGAGGCTTATCTTATTTAAGGGATGAACTTTTATTTTATA-AAAAATCGGG
1 T-ATTACGAGAA-TCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA-AGGAAAAT-AGG
* * *
3701662 CAAAGAAAAGGTTTTCATTC--AAGAAGAATCATTAATATCATTTATCCTAATGAGGAGAATGTG
62 CAAAGAAAAGATTTTCATGCAAAAGAA-AATCATCAATATCATTTATCCTAATGAGGAGAATGTG
* * * *
3701725 TTTGTAATGCCTAATCACAAAATGAATGAAGATCGTTACTAGAATCCGTGTTTGTCTCATTTGAG
126 TTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAG
** * * * * * *
3701790 ATATGAACTTATACTTTACAAAAATTGGTTGAAAAAA-GTCTTTTCTTGTGAAACCAAAGCATCA
191 GCACGAACTTAGACTTTACAAAAATTGGTGGAAAAAATG-CCTTTCTTGCGAAACCAAACCATCA
* * * * * *
3701854 ATATGATTG-ATGCTAATGAGAAGACTATGTTTAAGGTGCCTAATCTTAAAAAAAATAGGGACTA
255 ATAT-AGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAAT-GGGATTA
* * * * * * * * * *
3701918 GTATGAGTCTTCAGGCTGGTCTTATTTATGAGACCAACTTTGATTTTATCAAAAACGATGGAAAC
318 GTATGAGTATTCATGTTTGTCTTATATAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAG
* * * *
3701983 AAAAACTTTTAC-TGTGACACTAGAGCATCAATGTCATGTATCCTAATAAAGAGAATGTGTTTTT
383 AAAAGCTTTT-CTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTT
* * *
3702047 AGTTCTCAATCTTCAAAAGAATGGAGAC
447 GGTTCCCAATCTTGAAAAGAATGGAGAC
* * * *
3702075 TGTTACGAGGATCGAAGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAAGGCAA
1 TATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT-AGGCAA
* * * *
3702140 ACAACAGA-ATTCGATGCAAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTT
65 AGAAAAGATTTTC-ATGC-AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTT
* * * * *
3702204 TATATTGCCTAATCACAAAATGAGTGTAGATCATTAGTAGAATCCATGTTTGTCTCATTTGACGC
128 TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGC
* * ** * *
3702269 ACGAACTT-GACTTTATAAAAATTAGTCAAAAAAATGCCTTTCTCGCAAAACCAAACCATCAATA
193 ACGAACTTAGACTTTACAAAAATTGGTGGAAAAAATGCCTTTCTTGCGAAACCAAACCATCAATA
* * **
3702333 TCGT-TGATCCTAAAGAGAAGACTATGTTTATGGCACCTAATCTTGAAAAGAATGGGGATTAGTA
258 TAGTGT-ATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAAT-GGGATTAGTA
* *
3702397 TGACTATTCATGTTTGTCTTATATAAGAGACAAACTTTGATTTTATCAAAAACGGTGGAAAGAAA
321 TGAGTATTCATGTTTGTCTTATATAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAA
* ** * *
3702462 AGCTTTTCCTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGATTGCG-TTTTGGCT
386 AGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGG-T
* *
3702526 TCCCAAT-TTGGAAATGAAT-AAGGAC
450 TCCCAATCTT-GAAAAGAATGGA-GAC
* * *
3702551 TATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTACGAAAAATTGGGCAA
1 TATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAA-TAGGCAA
* * ** * *
3702616 AGAAAAGATTTCCTTGTGAAAGAAAATCATCAATACCATTTATCCTAATGAGGAGAATGTTTTTA
65 AGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
* * * * * ** * **
3702681 TAGTGCCTAATCATAAAATGAGTGTAGATCATTAGTATAATCTGTGTTTGTCACATTTGACTCAC
130 TAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAC
* *
3702746 GAACTTACACTTTACAAAAATTGGT-GAGAAAAATGCCTTTCTTGCGATACCAAACCATCAATAT
195 GAACTTAGACTTTACAAAAATTGGTGGA-AAAAATGCCTTTCTTGCGAAACCAAACCATCAATAT
* * *
3702810 CGTGTATCCTAATGAGAAGATTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTGGTATG
259 AGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAAT-GGGATTAGTATG
* * * * *
3702875 AGTATTCGTATTTATCTTATATAAGAGACAAACTTTGATTCTATC-AAAATGGTGGAACGAAAAG
323 AGTATTCATGTTTGTCTTATATAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAG
* * * * * **
3702939 CTTTTCTTGCGATACCAAAGCATCAATGTCATGTATTCTAATGATGAGCATG-CATTTTGGCTTC
388 CTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGG-TTC
* * *
3703003 CTAATCTAGAAAACAAT-GAGGAC
452 CCAATCTTGAAAAGAATGGA-GAC
* * * * ** * * * * *
3703026 TTTTATGAGAATCAATGCTTATCTTATTTAAAAGATGAACCTTGATTTTACGAAAAATTGGGCGA
1 TATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAA-TAGGCAA
* * * *
3703091 AGAAAAAATTTTCATGTAGAAA-AAAATAATCAATATCATTTATCCTAATGAGGAGAATATGTTT
65 AGAAAAGATTTTCATGCA-AAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTT
* * *
3703155 ATAGTGCCTAATCATC-AAATGAATGAAGATCATTACTAGAATCTATATTTGTCTCATTTAAGGC
129 ATAGTGCCTAATCA-CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGC
* * * *
3703219 ATGAACTTAGACTTTA-AAAAAATGGTGGGAGAAATGC
193 ACGAACTTAGACTTTACAAAAATTGGTGGAAAAAATGC
3703256 TGAAAGCTCA
Statistics
Matches: 4189, Mismatches: 694, Indels: 200
0.82 0.14 0.04
Matches are distributed among these distances:
468 2 0.00
469 110 0.03
470 13 0.00
471 48 0.01
472 222 0.05
473 229 0.05
474 84 0.02
475 1111 0.27
476 1499 0.36
477 843 0.20
478 28 0.01
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (474 bp):
TATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGCAAA
GAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTAT
AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACG
AACTTAGACTTTACAAAAATTGGTGGAAAAAATGCCTTTCTTGCGAAACCAAACCATCAATATAG
TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGATTAGTATGAGT
ATTCATGTTTGTCTTATATAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTT
TTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGTTCCCAA
TCTTGAAAAGAATGGAGAC
Found at i:3700617 original size:159 final size:157
Alignment explanation
Indices: 3697890--3702982 Score: 1544
Period size: 159 Copynumber: 32.2 Consensus size: 157
3697880 AAAAGAAAAT
* * * * * ** * * *
3697890 CATCACTATCATTTATCCTAATAAAAAGAATGTGTTTATAGTGCCTAATCACAAAATGAGTGTAG
1 CATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGGTGCCTAATCTTAAAAAGAATGGAG
* * * * * * * *
3697955 ATCACTA-GTAGAATCCATGGTTGTCTCATTTGAGGCACGAA-TTTAGACTTTA-CAAAAATTGA
66 ATTAGTATG-AGTATTCATGTTTGTCTTATTTAAGG-ACGAACTTT-GA-TTTATCAAAAA-TGG
* * * * *
3698017 TGGGAA-AAATGCCTTTCTTGCAAAACCAAAC
126 TGGAAAGAAAAGCTTTTCTTGCGAAACCAAAG
* * * * * *
3698048 CATCAATATCGTGTATCCAAATG-AGAAGACTATGTTTATGGTGCCTAATCTTGATAAGAATAGG
1 CATCAATATCATGTATCCTAATGAAG-AGAATGTGTTTATGGTGCCTAATCTTAAAAAGAAT-GG
* * * **
3698112 -GATTAGTATGAGTATTCATGTTTATCTTCTATT-AGAGACAAACTTTGAATCCATCAAAAATGG
64 AGATTAGTATGAGTATTCATGTTTGTCTTAT-TTAAG-GACGAACTTTG-ATTTATCAAAAATGG
*
3698175 TGGAAAGAAAAGCTTTTCTTGCGACACCAAAG
126 TGGAAAGAAAAGCTTTTCTTGCGAAACCAAAG
* * * * * *
3698207 AATCAATGTCATGTATCCTATTGAAGAGAATGTGTTT-TAGCTTCCCAATCTTAAAAAGAATGGA
1 CATCAATATCATGTATCCTAATGAAGAGAATGTGTTTAT-GGTGCCTAATCTTAAAAAGAATGGA
* * ** * * * * *
3698271 GA-CAGT-TAAAAAAATCGATGCTTGTCTTCTTTAAGGGATGAACTTTGATTT-TAAGGAAAATA
65 GATTAGTAT-GAGTATTC-ATGTTTGTCTTATTTAA-GGACGAACTTTGATTTATCA--AAAAT-
* * * * * ** *
3698333 AG-GGAAAGAAAA-TTATTTCCATGCTATAGAAAAT
124 GGTGGAAAGAAAAGCT-TTT-CTTGCGAAACCAAAG
* * * * * ** * *
3698367 CATCAATATCATTTATCCTAACGAGGAGAATGTGTTTCTAGTGCCTAATCACAAAATGAATGAAG
1 CATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGGTGCCTAATCTTAAAAAGAATGGAG
*** * * * * * * *
3698432 ATCCTTACT-AGAATCCATGTTTGTCTCATTTGAGGTACAAACTTAGACTTTA-AAAAAATTGGT
66 ATTAGTA-TGAGTATTCATGTTTGTCTTATTTAAGG-ACGAACTTTGA-TTTATCAAAAA-TGGT
* *
3698495 AGG-AA-AAAAGCCTTTCTTGCAAAACCAAAG
127 -GGAAAGAAAAGCTTTTCTTGCGAAACCAAAG
* * * * * * * * *
3698525 CATCAAAATTATGGATCCTAAAG-AGAAGACTATGTTTATGGTACCTAATCTTGAACAGAATGG-
1 CATCAATATCATGTATCCTAATGAAG-AGAATGTGTTTATGGTGCCTAATCTTAAAAAGAATGGA
* * * * * * * *
3698588 GATTAGTATGAGTATTTAGGTTTCTCTGATTTATCA-GTCAAACTTCGATTCTATCAAAAAGGGT
65 GATTAGTATGAGTATTCATGTTTGTCTTATTTA--AGGACGAACTTTGATT-TATCAAAAATGGT
* * *
3698652 GGAAAGAAAGGATTTTACTAT--GACACCAAAG
127 GGAAAGAAAAGCTTTT-CT-TGCGAAACCAAAG
* * * * * * * *
3698683 CATCAATGTCAAGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCTAATCATGAATAGAATGGAG
1 CATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGGTGCCTAATCTTAAAAAGAATGGAG
* * * * * * * * ** * *
3698748 ACTACTACGAG-AATCGAGGCTTCTCTTGTTTAAGGTAAAAACTTTCATTTA--AAGGCAAATAC
66 ATTAGTATGAGTATTC-ATGTTTGTCTTATTTAAGG-ACGAACTTTGATTTATCAA---AAAT-G
** * * * ** *
3698810 G-AAAAAGAAAAGATTTTCATGCAAAAAAAAAT
125 GTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAG
* * * * * ** * * * *
3698842 CTTCAGTATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAGAATGAGTGTAG
1 CATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGGTGCCTAATCTTAAAAAGAATGGAG
* * * * * *
3698907 ATCATTA-GTAG-AATCAATGTTTGTCTCATTTGACGCACGAA-TTTAGACTTTA-CAAAAATTG
66 ATTAGTATG-AGTATTC-ATGTTTGTCTTATTT-AAGGACGAACTTT-GA-TTTATCAAAAA-TG
* * ** *
3698968 GTGGAAA-AAATGCTTTTTTTATGAAACCAAAC
125 GTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAG
* * * *
3699000 CATCAATAT-AGTGTATCCTAATG-AGAAAACTATGTTTATGGTGCCTAACCTTGAAAAGAATAG
1 CATCAATATCA-TGTATCCTAATGAAGAGAA-TGTGTTTATGGTGCCTAATCTTAAAAAGAAT-G
* * * *
3699063 G-GATTAGTATGAGTATTTATGTTTGTCTTATATAAGAGACAAACTTTGAATTCATCAAAAATGG
63 GAGATTAGTATGAGTATTCATGTTTGTCTTATTTAAG-GACGAACTTTG-ATTTATCAAAAATGG
* *
3699127 TGGAAAGAAAAGCTTTTCTTAC-AACACTAAAG
126 TGGAAAGAAAAGCTTTTCTTGCGAA-ACCAAAG
* * ** * *
3699159 AATCAATGTCATGTATCCTAATGAAGAGAATACGTTT-TGGCTTCCTAATCTTGAAAAGAATGGA
1 CATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGG-TGCCTAATCTTAAAAAGAATGGA
* * * ** * **
3699223 GACT-GTTACGAG-AATCGATACTTGTC---TTTAAGGGATGAACTTTGATTTTAAGAAAAATAG
65 GATTAG-TATGAGTATTC-ATGTTTGTCTTATTTAA-GGACGAACTTTGA-TTTATCAAAAAT-G
** * * * * *
3699283 G-GGAAAGAAAATATTTCCATGCTATAA-AAAAT
125 GTGGAAAGAAAAGCTTTTCTTGCGA-AACCAAAG
* * * * * * * ** * *
3699315 CATCAATATAATTTATCTTAATGAGGAGAATGTGTTTATAGTGCTTATTCACAAAATGAATGAAG
1 CATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGGTGCCTAATCTTAAAAAGAATGGAG
** * * * * * * **
3699380 ACCATTACT-AGAATCCATGTTTGTCTTATTTGAGGTACAAACTTAGACTTTA-CAAAAATTGAA
66 ATTAGTA-TGAGTATTCATGTTTGTCTTATTTAAGG-ACGAACTTTGA-TTTATCAAAAA-TGGT
* * *
3699443 GGGAA-AAAA-CCTTTCTTGTGAAACCAAAG
127 GGAAAGAAAAGCTTTTCTTGCGAAACCAAAG
* * * *
3699472 CATCAAAATTATGTATCCT-A--AAGAGAAGGCTAGGTTTATGGTGCCTAATCCTAAAAAGAATG
1 CATCAATATCATGTATCCTAATGAAGAGAATG-T--GTTTATGGTGCCTAATCTTAAAAAGAATG
* * * ** * * * *
3699534 G-GATTAGTATAAGTATTCAGGTTTGTCTGATTTGTGAGTCG-ACTTCGATCTATCAAAAACGGT
63 GAGATTAGTATGAGTATTCATGTTTGTCTTATTTAAG-GACGAACTTTGATTTATCAAAAATGGT
* * *
3699597 GGAAAGAAAGGATTTTACTAT--GACACCAAAG
127 GGAAAGAAAAGCTTTT-CT-TGCGAAACCAAAG
* * * * *
3699628 CATCAATGTCATGTATCCTAATGAAGAGAATGT-TCTTTTGGCT-CCCAATCTTGAAAAGAATAG
1 CATCAATATCATGTATCCTAATGAAGAGAATGTGT-TTATGG-TGCCTAATCTTAAAAAGAATGG
* * * * * * * * *
3699691 AGACT-GTTACGAG-AATCGAGGCTTGTCTTGTCTAAGGTATGAACATTGATTTA--AAGGCAAA
64 AGATTAG-TATGAGTATTC-ATGTTTGTCTTATTTAAGG-ACGAACTTTGATTTATCAA---AAA
** * * * ** *
3699752 T-ACGAAAATGAAAA-CATTTTCATGCAAAAGAAAAT
123 TGGTGGAAA-GAAAAGC-TTTTCTTGCGAAACCAAAG
* * * * * * ** * * *
3699787 CTTTAGTATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAGTGTAG
1 CATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGGTGCCTAATCTTAAAAAGAATGGAG
* * * * * *
3699852 ATCATTA-GTAG-AATCAATATTTGTCTTATTTGATA-CACGAACTTAGACTTTA-CAAAAATTG
66 ATTAGTATG-AGTATTC-ATGTTTGTCTTATTT-A-AGGACGAACTTTGA-TTTATCAAAAA-TG
* * *
3699913 GTGGAAA-AAATA-CCTTTCTTGCAAAACCAAAC
125 GTGGAAAGAAA-AGCTTTTCTTGCGAAACCAAAG
* * *
3699945 CATCAATA-GAGTGTATCCTAATG-AGAAGACTGTGTTTATGGTGCCTAATCTTGAAAAGAATGT
1 CATCAATATCA-TGTATCCTAATGAAG-AGAATGTGTTTATGGTGCCTAATCTTAAAAAGAATG-
* * * * * *
3700008 G-GATTAGTATGTGTATTCATGTTTGCCTTATATAAGAGACAAACTTTGATTCTATCAAAAACGA
63 GAGATTAGTATGAGTATTCATGTTTGTCTTATTTAAG-GACGAACTTTGATT-TATCAAAAATGG
* * ** * *
3700072 TAGAAAGAAAAGCTTTTTTTATGACACTAAAG
126 TGGAAAGAAAAGCTTTTCTTGCGAAACCAAAG
* * ** * * * * * *
3700104 CATCAATGTTATGTATCCTAGCGAAGGGATTGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAG
1 CATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGGTGCCTAATCTTAAAAAGAATGGAG
* * * * * * ** *
3700169 ACTATTACGTG-AATCGATGCTTGTCTTATTTAACGGGTGAACTTTGATTT-TAAGGAAAATAGG
66 ATTAGTATGAGTATTC-ATGTTTGTCTTATTTAA-GGACGAACTTTGATTTATCA--AAAAT-GG
* ** ** * ** *
3700232 -GCAAAGAAAATATTTTGGTGCAAAAGAAAAT
126 TGGAAAGAAAAGCTTTTCTTGCGAAACCAAAG
* * * * ** * **
3700263 CATCAATGTCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATCAAG
1 CATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGGTGCCTAATCTTAAAAAGAATGGAG
* * * * * * * * * * *
3700328 ATCA-TTTCTAGAATCCAAGTTTGACTTATTTGAGGCACAAACTTAGACTTTA-CAAAAATTAGT
66 ATTAGTAT-GAGTATTCATGTTTGTCTTATTTAAGG-ACGAACTTTGA-TTTATCAAAAA-TGGT
* **
3700391 GGGAA-AAAAGACTTTTCTTGCGGTACCAAAG
127 GGAAAGAAAAG-CTTTTCTTGCGAAACCAAAG
* * * * *
3700422 CATCAATATCGTGTATCCTAATG-AGAAGGATATGTTTATGGTGCCTAATCCTAAAAAGAATGGG
1 CATCAATATCATGTATCCTAATGAAG-AGAATGTGTTTATGGTGCCTAATCTTAAAAAGAATGGA
* * **
3700486 GATTAGTATGAGTATTCAGGTTTGTCTTAGTTAAGTGATAAACTTTGATTCTATCAAAAATGGTG
65 GATTAGTATGAGTATTCATGTTTGTCTTATTTAAG-GACGAACTTTGATT-TATCAAAAATGGTG
* *
3700551 GAAAGAAAAGCTTTTCTTGTGACACCAAAG
128 GAAAGAAAAGCTTTTCTTGCGAAACCAAAG
* * * * *
3700581 CATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAG
1 CATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGGTGCCTAATCTTAAAAAGAATGGAG
* * * * * ** *
3700646 ACTATTACGAG-AATCAAGGCCTGTCTTATTTAAGGTATGAACTTTGA-TT-TCAAGGAAGATAG
66 ATTAGTATGAGTATTC-ATGTTTGTCTTATTTAAGG-ACGAACTTTGATTTATCAA--AA-AT-G
* * * * * ** *
3700708 G-GCAAAGAAAAGATTTTCGTACAAAAGAAAAT
125 GTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAG
** * * * * ** * *
3700740 TTTCAGTATCATTTATCCTAAT-AAGGAGAATGTGTTTATAGTGCCCAATCACAAAATGAGTGTT
1 CATCAATATCATGTATCCTAATGAA-GAGAATGTGTTTATGGTGCCTAATCTTAAAAAGAATG--
* * ** * * * *
3700804 AATCATTAGTA-GA--AACCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTA-CAAAAATT
63 GA-GATTAGTATGAGTATTCATGTTTGTCTTATTTAAGG-ACGAACTTTGA-TTTATCAAAAA-T
* * *
3700865 GATTGG-AA-AAATGCCTTTT-TTGCGAAACCAAAC
124 G-GTGGAAAGAAAAG-CTTTTCTTGCGAAACCAAAG
* * * * * * *
3700898 CATTAATATCAGGTATCCAAATG-AGAAGACTGTGTTTGTGGTGCCTAATGTTGAAAAGAATGGT
1 CATCAATATCATGTATCCTAATGAAG-AGAATGTGTTTATGGTGCCTAATCTTAAAAAGAATGG-
* * * * * * ***
3700962 GGCTT-GTATGACTATT-ATGTTTGTCTTATATAAGAGACAAACTTTGATTCTATTAAAAACAAT
64 AGATTAGTATGAGTATTCATGTTTGTCTTATTTAAG-GACGAACTTTGATT-TATCAAAAATGGT
* * *
3701025 AGAAAGAAAAGTTTTTCTTGCGACACCAAAG
127 GGAAAGAAAAGCTTTTCTTGCGAAACCAAAG
* * ** * * *
3701056 CATCATTGTCATGTATCCTAATGAAGAGAATGCATTT-TGGCTTCCTAATCTTGAAAAGAATGGG
1 CATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGG-TGCCTAATCTTAAAAAGAATGGA
* * * * ** * * * * *
3701120 GACTATTACGAGAATTGGTGCTTGTCTTCTTTCAGGGATGAACTTTGATTT-TAAGGAAAATAGG
65 GATTAGTATGAGTATTCATGTTTGTCTTATTT-AAGGACGAACTTTGATTTATCA--AAAAT-GG
* * * * * ** *
3701184 -AGAAAGAAAAGATTTCCATGCAAAAGAAAAT
126 TGGAAAGAAAAGCTTTTCTTGCGAAACCAAAG
* * * * * * * ** * *
3701215 CATTAATATCATTTATCATAATGAGGAGAATGTGTTTGTAGTGCTTAATCAGAAAATGAATGAAG
1 CATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGGTGCCTAATCTTAAAAAGAATGGAG
* * * * * * *
3701280 ATCATTACT-AG-AATCTATGTTTGTCTCATTTGAGGCACGAACTTAAGA-CT-TCAGAAAAGTT
66 ATTAGTA-TGAGTATTC-ATGTTTGTCTTATTTAAGG-ACGAACTT-TGATTTATCA-AAAA--T
* ** * * *
3701341 GGTGG-GAGAATTGCCTTTCTTGC-AACAGCAAAA
124 GGTGGAAAGAAAAGCTTTTCTTGCGAA-ACCAAAG
* * ** * *
3701374 CAGT-AATATCATGTATCCTAATG-AGAAGACTATGTTTATGGCACCTAATCCTAAAAAGAGTAG
1 CA-TCAATATCATGTATCCTAATGAAG-AGAATGTGTTTATGGTGCCTAATCTTAAAAAGAAT-G
* * * * * * * *
3701437 G-GATTAGTATTAGTATTCAAGTTTATCTTAATTATGAGACAAACATTGATTCTATC-AAAACGG
63 GAGATTAGTATGAGTATTCATGTTTGTCTTATTTAAG-GACGAACTTTGATT-TATCAAAAATGG
* * * *
3701500 TTGAAAGAAAAGCTTTTATTGTGACACCAAAG
126 TGGAAAGAAAAGCTTTTCTTGCGAAACCAAAG
** * * * * *
3701532 CATCAATGCCATGTATCCTAATGAAGGGAGTGTTGTTTTTGGTTTCC-AATCTTAAAAAGACTGG
1 CATCAATATCATGTATCCTAATGAAGAGAATG-TGTTTATGG-TGCCTAATCTTAAAAAGAATGG
* * * * * * * * *
3701596 AGACT-GATATGA-AAGTCGAGGCTTATCTTATTTAAGGGATGAACTTTTATTTTATAAAAAATC
64 AGATTAG-TATGAGTATTC-ATGTTTGTCTTATTTAA-GGACGAACTTTGA-TTTATCAAAAAT-
* * *
3701659 GG-GCAAAGAAAAGGTTTTCATT-C-AAGA--AGAAT
124 GGTGGAAAGAAAAGCTTTTC-TTGCGAA-ACCA-AAG
* * * * ** ** * *
3701691 CATTAATATCATTTATCCTAATGAGGAGAATGTGTTTGTAATGCCTAATCACAAAATGAATGAAG
1 CATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGGTGCCTAATCTTAAAAAGAATGGAG
* * * * * * * *
3701756 A-TCGTTACT-AGAATCCGTGTTTGTCTCATTTGAGATATGAACTTAT-ACTTTA-CAAAAATTG
66 ATTAG-TA-TGAGTATTCATGTTTGTCTTATTTAAG-GACGAACTT-TGA-TTTATCAAAAA-TG
* *
3701817 GTTG-AA-AAAAGTCTTTTCTTGTGAAACCAAAG
125 GTGGAAAGAAAAG-CTTTTCTTGCGAAACCAAAG
* * * * * *
3701849 CATCAATATGAT-TGATGCTAATG-AGAAGACTATGTTTAAGGTGCCTAATCTTAAAAAAAATAG
1 CATCAATATCATGT-ATCCTAATGAAG-AGAATGTGTTTATGGTGCCTAATCTTAAAAAGAAT-G
* * * * * * * * *
3701912 G-GACTAGTATGAGTCTTCAGGCTGGTCTTATTTATGAGACCAACTTTGATTTTATCAAAAACGA
63 GAGATTAGTATGAGTATTCATGTTTGTCTTATTTAAG-GACGAACTTTGA-TTTATCAAAAATGG
* * * * * *
3701976 TGGAAACAAAAACTTTTAC-TGTGACACTAGAG
126 TGGAAAGAAAAGCTTTT-CTTGCGAAACCAAAG
* * * * * *
3702008 CATCAATGTCATGTATCCTAATAAAGAGAATGTGTTTTTAGT-TCTCAATCTTCAAAAGAATGGA
1 CATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGGTGCCT-AATCTTAAAAAGAATGGA
* * * * * * *
3702072 GACT-GTTACGAGGA-TCGAAGCTTGTCTTATTTAAGGGATGAACTTTGATTTA-AAGGAAAATA
65 GATTAG-TATGAGTATTC-ATGTTTGTCTTATTTAA-GGACGAACTTTGATTTATCA--AAAAT-
* * * * ** * * ** *
3702134 AG-GCAAACAACAG-AATTCGATGCAAAAAAAAAAT
124 GGTGGAAAGAAAAGCTTTTC-TTGC-GAAACCAAAG
* * ** ** * * *
3702168 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATATTGCCTAATCACAAAATGAGTGTAG
1 CATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGGTGCCTAATCTTAAAAAGAATGGAG
* * * * * * * *
3702233 ATCATTA-GTAGAATCCATGTTTGTCTCATTTGACGCACGAAC-TTGACTTTAT-AAAAATTAGT
66 ATTAGTATG-AGTATTCATGTTTGTCTTATTT-AAGGACGAACTTTGA-TTTATCAAAAA-TGGT
* * * * *
3702295 -CAAA-AAAATGCCTTTCTCGCAAAACCAAAC
127 GGAAAGAAAA-GCTTTTCTTGCGAAACCAAAG
* * * * ** *
3702325 CATCAATATCGT-TGATCCTAAAG-AGAAGACTATGTTTATGGCACCTAATCTTGAAAAGAATGG
1 CATCAATATCATGT-ATCCTAATGAAG-AGAATGTGTTTATGGTGCCTAATCTTAAAAAGAATGG
* * * * *
3702388 GGATTAGTATGACTATTCATGTTTGTCTTATATAAGAGACAAACTTTGATTTTATCAAAAACGGT
64 AGATTAGTATGAGTATTCATGTTTGTCTTATTTAAG-GACGAACTTTGA-TTTATCAAAAATGGT
*
3702453 GGAAAGAAAAGCTTTTCCTGC-AACACCAAAG
127 GGAAAGAAAAGCTTTTCTTGCGAA-ACCAAAG
* * * * * * * *
3702484 CATCAATGTCATGTATCCTAATGAAGAGATTGCGTTT-TGGCTTCCCAAT-TTGGAAATGAAT-A
1 CATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGG-TGCCTAATCTT-AAAAAGAATGG
* * * * * *
3702546 AGGACTATTACGAG-AATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTT-TACGAAAAAT
64 A-GATTAGTATGAGTATTC-ATGTTTGTCTTATTTAA-GGACGAACTTTGATTTAT-C-AAAAA-
* * * * ** *
3702609 TGG-GCAAAGAAAAGATTTCCTTGTGAAAGAAAAT
123 TGGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAG
* * * * * * * * *
3702643 CATCAATACCATTTATCCTAATGAGGAGAATGTTTTTATAGTGCCTAATCATAAAATGAGTGTAG
1 CATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGGTGCCTAATCTTAAAAAGAATGGAG
* * ** *** **
3702708 ATCA-T-T-AGTATAATCTGTGTTTGTCACATTTGACTCACGAACTTACACTTTA-CAAAAATTG
66 ATTAGTATGAGTAT--TC-ATGTTTGTCTTATTT-AAGGACGAACTTTGA-TTTATCAAAAA-TG
* * * *
3702769 GT-GAGAA-AAATGCCTTTCTTGCGATACCAAAC
125 GTGGA-AAGAAAAGCTTTTCTTGCGAAACCAAAG
* * * * *
3702801 CATCAATATCGTGTATCCTAATG-AGAAGATTATGTTTATGGTGCCTAATCTTGAAAAGAATGGG
1 CATCAATATCATGTATCCTAATGAAG-AGAATGTGTTTATGGTGCCTAATCTTAAAAAGAATGGA
* * * * * *
3702865 GATTGGTATGAGTATTCGTATTTATCTTATATAAGAGACAAACTTTGATTCTATC-AAAATGGTG
65 GATTAGTATGAGTATTCATGTTTGTCTTATTTAAG-GACGAACTTTGATT-TATCAAAAATGGTG
* *
3702929 GAACGAAAAGCTTTTCTTGCGATACCAAAG
128 GAAAGAAAAGCTTTTCTTGCGAAACCAAAG
* *
3702959 CATCAATGTCATGTATTCTAATGA
1 CATCAATATCATGTATCCTAATGA
3702983 TGAGCATGCA
Statistics
Matches: 3524, Mismatches: 1087, Indels: 647
0.67 0.21 0.12
Matches are distributed among these distances:
154 15 0.00
155 22 0.01
156 217 0.06
157 305 0.09
158 1017 0.29
159 1606 0.46
160 294 0.08
161 42 0.01
162 5 0.00
163 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (157 bp):
CATCAATATCATGTATCCTAATGAAGAGAATGTGTTTATGGTGCCTAATCTTAAAAAGAATGGAG
ATTAGTATGAGTATTCATGTTTGTCTTATTTAAGGACGAACTTTGATTTATCAAAAATGGTGGAA
AGAAAAGCTTTTCTTGCGAAACCAAAG
Found at i:3704034 original size:33 final size:32
Alignment explanation
Indices: 3703978--3704041 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 32
3703968 GTTACAAGCT
*
3703978 ATGTATCGATACATTTCTTCATGTATTGATACA
1 ATGTATCGATACATTTC-TCATGTATCGATACA
3704011 ATGTATCGATACATTGTAC-CATGTATCGATA
1 ATGTATCGATACATT-T-CTCATGTATCGATA
3704042 TAAATAGTGA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
33 26 0.93
34 1 0.04
35 1 0.04
ACGTcount: A:0.31, C:0.16, G:0.14, T:0.39
Consensus pattern (32 bp):
ATGTATCGATACATTTCTCATGTATCGATACA
Found at i:3704116 original size:19 final size:19
Alignment explanation
Indices: 3704072--3704127 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
3704062 ACTGCCAGTT
* **
3704072 CATGTATCGATGCAATTGTC
1 CATGTATCGATACAA-TGAA
3704092 CATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
3704111 CATGTATCGATACAATG
1 CATGTATCGATACAATG
3704128 TATCGATACT
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 19 0.58
20 14 0.42
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:3704130 original size:13 final size:13
Alignment explanation
Indices: 3704112--3704136 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3704102 TACAATGAAC
3704112 ATGTATCGATACA
1 ATGTATCGATACA
3704125 ATGTATCGATAC
1 ATGTATCGATAC
3704137 TGTCGTGACG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3705005 original size:79 final size:80
Alignment explanation
Indices: 3704848--3705068 Score: 229
Period size: 79 Copynumber: 2.8 Consensus size: 80
3704838 AACTGGGCTA
* * * * * * *
3704848 GAGTATCCCCGATTATGAAAAATCGGTGTTCTAGAAATAAAAATTTGG-GTTGGAGTATCCCC-T
1 GAGTATCCCTGATTATGAGAAATAGCTATTTTAGAAAT-AAAA-TCGGAGTTGGAGTATCCCCGT
*
3704911 CGAAAATAATAGGGTTG
64 CGAAAATAACAGGGTTG
* *
3704928 GAGTATCCCTGATTAT-AGAAAATAGGTATTTT-GAAAATAAAATCGG-GATTGGAGAATCCCCG
1 GAGTATCCCTGATTATGAG-AAATAGCTATTTTAG-AAATAAAATCGGAG-TTGGAGTATCCCCG
*
3704990 T-GAAAATAACGGGGTTG
63 TCGAAAATAACAGGGTTG
* * *
3705007 GAGTATCCCTGATTGTGAGAAATTGCTGTTTTAGAAATAAAATCGGAGTTGGAGTATCCCCG
1 GAGTATCCCTGATTATGAGAAATAGCTATTTTAGAAATAAAATCGGAGTTGGAGTATCCCCG
3705069 ATTGTGGAAA
Statistics
Matches: 120, Mismatches: 14, Indels: 15
0.81 0.09 0.10
Matches are distributed among these distances:
78 4 0.03
79 82 0.68
80 34 0.28
ACGTcount: A:0.33, C:0.13, G:0.25, T:0.29
Consensus pattern (80 bp):
GAGTATCCCTGATTATGAGAAATAGCTATTTTAGAAATAAAATCGGAGTTGGAGTATCCCCGTCG
AAAATAACAGGGTTG
Found at i:3705066 original size:51 final size:51
Alignment explanation
Indices: 3705003--3705118 Score: 180
Period size: 51 Copynumber: 2.3 Consensus size: 51
3704993 AAATAACGGG
* *
3705003 GTTGGAGTATCCCTGATTGT-GAGAAATTGCTGTTTTAGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGGA-AAATTGCTATTTTAGAAATAAAATCGGA
* *
3705054 GTTGGAGTATCCCCGATTGTGGAAAATTGGTATTTTAGAAATAAAATCGGG
1 GTTGGAGTATCCCCGATTGTGGAAAATTGCTATTTTAGAAATAAAATCGGA
3705105 GTTGGAGTATCCCC
1 GTTGGAGTATCCCC
3705119 TCGGAAATAA
Statistics
Matches: 60, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
51 58 0.97
52 2 0.03
ACGTcount: A:0.29, C:0.12, G:0.27, T:0.32
Consensus pattern (51 bp):
GTTGGAGTATCCCCGATTGTGGAAAATTGCTATTTTAGAAATAAAATCGGA
Found at i:3705168 original size:28 final size:28
Alignment explanation
Indices: 3705101--3705169 Score: 75
Period size: 28 Copynumber: 2.5 Consensus size: 28
3705091 GAAATAAAAT
**
3705101 CGGGGTTGGAGTATCCCCTCGGAAATAA
1 CGGGGTTGGAGTATCCCCAAGGAAATAA
* * * * *
3705129 TGGGATTAGAGTATTCCCAATGAAATAA
1 CGGGGTTGGAGTATCCCCAAGGAAATAA
3705157 CGGGGTTGGAGTA
1 CGGGGTTGGAGTA
3705170 ATCCAACTGT
Statistics
Matches: 31, Mismatches: 10, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.29, C:0.14, G:0.32, T:0.25
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCAAGGAAATAA
Found at i:3705298 original size:79 final size:78
Alignment explanation
Indices: 3705134--3705345 Score: 237
Period size: 79 Copynumber: 2.7 Consensus size: 78
3705124 AATAATGGGA
* * * * * * * *
3705134 TTAGAGTATTCCCAATGAAATAACGGGGTTGGAGTAAT-CCAACTGTGAGGAATCAATATTTTAG
1 TTAGAGTATCCCCTAGGAAATAACGGGGTTGGAGT-ATCCCGATTATGAGAAATTAATATTTTAG
3705198 AAATAAAGCCGGGG
65 AAATAAAGCCGGGG
3705212 TTAGAGTATCCCCTAGGAAATAACGGGGTTGGAGTATCCCTGATTATGAGAAATTAATATTTTAG
1 TTAGAGTATCCCCTAGGAAATAACGGGGTTGGAGTATCCC-GATTATGAGAAATTAATATTTTAG
*
3705277 GAATAAAGCCGGGG
65 AAATAAAGCCGGGG
* * * * * * * *
3705291 TTGGAGTATCCCCTCGAAAACAACGCGGTTTGAGTATCCCCGATTAAGAAAAATT
1 TTAGAGTATCCCCTAGGAAATAACGGGGTTGGAGTAT-CCCGATTATGAGAAATT
3705346 GATGTTTTGG
Statistics
Matches: 114, Mismatches: 17, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
77 2 0.02
78 34 0.30
79 75 0.66
80 3 0.03
ACGTcount: A:0.34, C:0.15, G:0.25, T:0.26
Consensus pattern (78 bp):
TTAGAGTATCCCCTAGGAAATAACGGGGTTGGAGTATCCCGATTATGAGAAATTAATATTTTAGA
AATAAAGCCGGGG
Found at i:3707857 original size:19 final size:21
Alignment explanation
Indices: 3707833--3707884 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
3707823 AGCGATACAC
*
3707833 TGTATCGATACA-TTACT-TA
1 TGTATCGATACATTTACTGAA
3707852 TGTATCGATACATTTACTGAA
1 TGTATCGATACATTTACTGAA
3707873 TGTATCGATACA
1 TGTATCGATACA
3707885 AATTATTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 12 0.40
20 5 0.17
21 13 0.43
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.38
Consensus pattern (21 bp):
TGTATCGATACATTTACTGAA
Found at i:3709055 original size:62 final size:58
Alignment explanation
Indices: 3708727--3709429 Score: 681
Period size: 55 Copynumber: 12.3 Consensus size: 58
3708717 TAATGTGCAC
* * *
3708727 CCTGGTCTTTGAGGACTA-AAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGGAAAGGCGT
1 CCTGCTCTTTGAGGACTAGAAAA-TGCCACCAACTTGTGTGGGCTTTTAAAA-G--AGGCGT
* * ** *
3708788 CCTACTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGC-TTT-GAA-AGGCGT
1 CCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTTAAAAGAGGCGT
*
3708843 CCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGC-TTT--AAGAGGCGT
1 CCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTTAAAAGAGGCGT
*
3708898 CCTGCTCTTTGAGGACT-GAAAAATGCCACCAACTTGTGTAGGC-TTT--AAGAGGCGT
1 CCTGCTCTTTGAGGACTAG-AAAATGCCACCAACTTGTGTGGGCTTTTAAAAGAGGCGT
* *
3708953 CCTGCTCTTTGAGGACTAGAAAATGCAACCAACTTGTGTGGGCTTTTAAAAAGAAAAGGTGT
1 CCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTT-AAAAG---AGGCGT
* * **
3709015 CTTGCTCTTTGAGGACTAGAAAATGCCACCGACTCATGTGGGC-TTTAAAAGA--CGT
1 CCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTTAAAAGAGGCGT
* *
3709070 CCTGCTCTTTAAGGACTGGAAAATGCCACCAACTTGTGTGGGC-TTT--AAGAGGCGT
1 CCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTTAAAAGAGGCGT
* * *
3709125 CCTGCTCTTTGAGGACT-GAAAATGCCACCAACTTTTGTGAGCTTTTAAAAAGAAAAGGCAT
1 CCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTT-AAAAG---AGGCGT
* * * * * *
3709186 CCTGTTCTTTAAGGACTAGAAAATGCCATCGACTCGTGTGGGC-TTT-GAA-AGGCGT
1 CCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTTAAAAGAGGCGT
* * * *
3709241 TCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGC-TTT-AAA-AGGCAT
1 CCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTTAAAAGAGGCGT
* * * * *
3709296 CTTGCTTTTTGAGGA-TTGAAAGGTGCCACCAACTTGTGTGGGCTTTTAAAAGAAAAAGGCAT
1 CCTGCTCTTTGAGGACTAGAAA-ATGCCACCAACTTGTGTGGGCTTTTAAAAG----AGGCGT
** *
3709358 CCTGCTCTTTGAGGACTA-AAGGTGCCACCAACTTGTGTGGG-TTTT-AAA-AGGCAT
1 CCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTTAAAAGAGGCGT
*
3709412 CCTGTTCTTTGAGGACTA
1 CCTGCTCTTTGAGGACTA
3709430 AAGGGTGAAA
Statistics
Matches: 552, Mismatches: 60, Indels: 67
0.81 0.09 0.10
Matches are distributed among these distances:
53 4 0.01
54 53 0.10
55 293 0.53
56 7 0.01
57 4 0.01
58 3 0.01
59 10 0.02
60 11 0.02
61 80 0.14
62 86 0.16
63 1 0.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (58 bp):
CCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTTAAAAGAGGCGT
Found at i:3709073 original size:172 final size:170
Alignment explanation
Indices: 3708727--3709631 Score: 974
Period size: 171 Copynumber: 5.4 Consensus size: 170
3708717 TAATGTGCAC
* * *
3708727 CCTGGTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGGAAAGGCGTCCTA
1 CCTGCTCTTTGAGGACTAAAAA-TGCCACCAACTTGTGTGGGCTTT---AA-G--AGGCGTCCTG
* * *
3708792 CTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGC-TTT----G-AAAGGCGTCCTGCTCT
59 CTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTTAAAAGAAAAGGCATCCTGCTCT
* *
3708851 TTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAGAGGCGT
124 TTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCGT
*
3708898 CCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTAGGCTTTAAGAGGCGTCCTGCTCTTT
1 CCTGCTCTTTGAGGACT-AAAAATGCCACCAACTTGTGTGGGCTTTAAGAGGCGTCCTGCTCTTT
* * ** *
3708963 GAGGACTAGAAAATGCAACCAACTTGTGTGGGCTTTTAAAAAGAAAAGGTGTCTTGCTCTTTGAG
65 GAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTT-AAAAGAAAAGGCATCCTGCTCTTTGAG
* ** *
3709028 GACTAGAAAATGCCACCGACTCATGTGGGCTTTAAAAGACGT
129 GACTAGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCGT
* *
3709070 CCTGCTCTTTAAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAGAGGCGTCCTGCTCTTT
1 CCTGCTCTTTGAGGACT-AAAAATGCCACCAACTTGTGTGGGCTTTAAGAGGCGTCCTGCTCTTT
* * * * *
3709135 GAGGACT-GAAAATGCCACCAACTTTTGTGAGCTTTTAAAAAGAAAAGGCATCCTGTTCTTTAAG
65 GAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTT-AAAAGAAAAGGCATCCTGCTCTTTGAG
* * * *
3709199 GACTAGAAAATGCCATCGACTCGTGTGGGCTTTGAAAGGCGT
129 GACTAGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCGT
* * * * * * *
3709241 TCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCTTGCTTTTT
1 CCTGCTCTTTGAGGACTA-AAAATGCCACCAACTTGTGTGGGCTTTAAGAGGCGTCCTGCTCTTT
*
3709306 GAGGA-TTGAAAGGTGCCACCAACTTGTGTGGGCTTTTAAAAGAAAAAGGCATCCTGCTCTTTGA
65 GAGGACTAGAAA-GTGCCACCAACTTGTGTGGGCTTTTAAAAG-AAAAGGCATCCTGCTCTTTGA
** * *
3709370 GGACTA-AAGGTGCCACCAACTTGTGTGGGTTTTAAAAGGCAT
128 GGACTAGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCGT
* ** * *
3709412 CCTGTTCTTTGAGGACTAAAGGGTG--A--AA-----G-GAG-----AGA-GTGTCCTGCTCTTT
1 CCTGCTCTTTGAGGACTAAA-AATGCCACCAACTTGTGTGGGCTTTAAGAGGCGTCCTGCTCTTT
*
3709461 GAGGACTAGGAAGTGCCACCAACTTGTGTGGGC-TTT-----AAAAGGCATCCTGCTCTTTGAGG
65 GAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTTAAAAGAAAAGGCATCCTGCTCTTTGAGG
** *
3709520 ACTA-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCAT
130 ACTAGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCGT
** *
3709560 CCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTG
1 CCTGCTCTTTGAGGACTAAAAATGCCACCAACTTGTGTGGGCTTTAAGAGGCGTCCTGCTCTTTG
3709625 AGGACTA
66 AGGACTA
3709632 AAGGGTGAAA
Statistics
Matches: 634, Mismatches: 70, Indels: 68
0.82 0.09 0.09
Matches are distributed among these distances:
147 4 0.01
148 81 0.13
149 1 0.00
151 2 0.00
154 3 0.00
155 36 0.06
156 7 0.01
157 2 0.00
161 2 0.00
162 3 0.00
163 21 0.03
165 44 0.07
166 3 0.00
167 3 0.00
168 2 0.00
169 1 0.00
170 2 0.00
171 241 0.38
172 176 0.28
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.28
Consensus pattern (170 bp):
CCTGCTCTTTGAGGACTAAAAATGCCACCAACTTGTGTGGGCTTTAAGAGGCGTCCTGCTCTTTG
AGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTTAAAAGAAAAGGCATCCTGCTCTTTGAGGA
CTAGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCGT
Found at i:3709545 original size:54 final size:54
Alignment explanation
Indices: 3709450--3709635 Score: 338
Period size: 54 Copynumber: 3.4 Consensus size: 54
3709440 GGAGAGAGTG
3709450 TCCTGCTCTTTGAGGACTAGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGCA
1 TCCTGCTCTTTGAGGACTA--AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCA
3709505 TCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCA
1 TCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCA
*
3709559 TCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCG
1 TCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCA
3709613 TCCTGCTCTTTGAGGACTAAAGG
1 TCCTGCTCTTTGAGGACTAAAGG
3709636 GTGAAAGGAA
Statistics
Matches: 129, Mismatches: 1, Indels: 3
0.97 0.01 0.02
Matches are distributed among these distances:
53 2 0.02
54 108 0.84
55 19 0.15
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (54 bp):
TCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCA
Found at i:3709625 original size:202 final size:202
Alignment explanation
Indices: 3709232--3709756 Score: 872
Period size: 202 Copynumber: 2.6 Consensus size: 202
3709222 TGTGGGCTTT
*
3709232 GAAAG-GCGTTCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCAT
1 GAAAGAGCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCAT
* * *
3709296 CTTGCTTTTTGAGGATTGAAAGGTGCCACCAACTTGTGTGGGCTTTTAAAAGAAAAAGGCATCCT
66 CCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGC-TTT------AAAAGGCATCCT
* *
3709361 GCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGTTTTAAAAGGCATCCTGTTCTTTGAGG
123 GCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGG
3709426 ACTAAAGGGTGAAAG
188 ACTAAAGGGTGAAAG
* *
3709441 GAGAGAGTGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCAT
1 GAAAGAGCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCAT
3709506 CCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTG
66 CCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTG
*
3709571 AGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGACTAAAGG
131 AGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACTAAAGG
3709636 GTGAAAG
196 GTGAAAG
*
3709643 GAAAGGGCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCAT
1 GAAAGAGCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCAT
*
3709708 CCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTATGTGGGCTTTAAAA
66 CCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAA
3709757 AGAAAAAAGG
Statistics
Matches: 302, Mismatches: 13, Indels: 9
0.93 0.04 0.03
Matches are distributed among these distances:
202 199 0.66
208 3 0.01
209 29 0.10
210 71 0.24
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.27
Consensus pattern (202 bp):
GAAAGAGCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCAT
CCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTG
AGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACTAAAGG
GTGAAAG
Found at i:3709758 original size:55 final size:54
Alignment explanation
Indices: 3709652--3709756 Score: 176
Period size: 54 Copynumber: 1.9 Consensus size: 54
3709642 GGAAAGGGCG
*
3709652 TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCA
1 TCCTGCTCTTTGAGGACTA-GAAGTGCCACCAACTTATGTGGGCTTTAAAAGGCA
3709707 TCCTGCTCTTTGAGGACTA-AAGGTGCCACCAACTTATGTGGGCTTTAAAA
1 TCCTGCTCTTTGAGGACTAGAA-GTGCCACCAACTTATGTGGGCTTTAAAA
3709757 AGAAAAAAGG
Statistics
Matches: 48, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
53 2 0.04
54 27 0.56
55 19 0.40
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.29
Consensus pattern (54 bp):
TCCTGCTCTTTGAGGACTAGAAGTGCCACCAACTTATGTGGGCTTTAAAAGGCA
Found at i:3716092 original size:79 final size:78
Alignment explanation
Indices: 3715953--3716172 Score: 273
Period size: 79 Copynumber: 2.8 Consensus size: 78
3715943 CAATAGGCTA
* *
3715953 GAGTATCCGCGATTATGAAAAATCGGTGTTCTAGAAATAAAAATTGGGGTTGGAGTATCCCCT-C
1 GAGTATCC-CGATTATG-AAAATTGGTGTTTTAGAAAT-AAAATTGGGGTTGGAGTATCCCCTAC
3716017 GAAAATAATAGGGTTG
63 GAAAATAATAGGGTTG
* * *
3716033 GAGTATCCCTGATTATAGAAAATTGGTATTTTAAAAATAAAATCGGGGTTGGAGTAT-CCCTACG
1 GAGTATCCC-GATTAT-GAAAATTGGTGTTTTAGAAATAAAATTGGGGTTGGAGTATCCCCTACG
*
3716097 AAAATAATGGGGTTG
64 AAAATAATAGGGTTG
* * * *
3716112 GAGTATCCCCGATTGTGAGAAATTGGTGTTTTGGAAATAAAATTGGAGTTAGAGTATCCCC
1 GAGTAT-CCCGATTATGA-AAATTGGTGTTTTAGAAATAAAATTGGGGTTGGAGTATCCCC
3716173 GATTGTGGAA
Statistics
Matches: 121, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
78 6 0.05
79 78 0.64
80 36 0.30
81 1 0.01
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (78 bp):
GAGTATCCCGATTATGAAAATTGGTGTTTTAGAAATAAAATTGGGGTTGGAGTATCCCCTACGAA
AATAATAGGGTTG
Found at i:3716171 original size:51 final size:51
Alignment explanation
Indices: 3716112--3716223 Score: 172
Period size: 51 Copynumber: 2.2 Consensus size: 51
3716102 AATGGGGTTG
* * *
3716112 GAGTATCCCCGATTGT-GAGAAATTGGTGTTTTGGAAATAAAATTGGAGTTA
1 GAGTATCCCCGATTGTGGA-AAATTGGTATTTTAGAAATAAAATCGGAGTTA
*
3716163 GAGTATCCCCGATTGTGGAAAATTGGTATTTTAGAAATAAAATCGGAGTTG
1 GAGTATCCCCGATTGTGGAAAATTGGTATTTTAGAAATAAAATCGGAGTTA
3716214 GAGTATCCCC
1 GAGTATCCCC
3716224 TAAAAAATAA
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
51 54 0.96
52 2 0.04
ACGTcount: A:0.31, C:0.12, G:0.26, T:0.31
Consensus pattern (51 bp):
GAGTATCCCCGATTGTGGAAAATTGGTATTTTAGAAATAAAATCGGAGTTA
Found at i:3716282 original size:28 final size:28
Alignment explanation
Indices: 3716210--3716279 Score: 95
Period size: 28 Copynumber: 2.5 Consensus size: 28
3716200 TAAAATCGGA
* *
3716210 GTTGGAGTATCCCCTAAAAAATAACGAG
1 GTTGGAGTATCCCCGATAAAATAACGAG
* *
3716238 ATTGGAGTATCCCCGATAAAATAACGGG
1 GTTGGAGTATCCCCGATAAAATAACGAG
3716266 GTTGGAGTAATCCC
1 GTTGGAGT-ATCCC
3716280 GATTGTGAGA
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
28 31 0.86
29 5 0.14
ACGTcount: A:0.34, C:0.19, G:0.24, T:0.23
Consensus pattern (28 bp):
GTTGGAGTATCCCCGATAAAATAACGAG
Found at i:3716322 original size:79 final size:79
Alignment explanation
Indices: 3716239--3716442 Score: 266
Period size: 79 Copynumber: 2.6 Consensus size: 79
3716229 AATAACGAGA
* *
3716239 TTGGAGTATCCCCGATAAAATAACGGGGTTGGAGTAAT-CCCGATTGTGAGAAATCAATATTTTA
1 TTGGAGTATCCCCGAGAAAATAACGGGGTTGGAGT-ATCCCCGATTATGAGAAATCAATATTTTA
3716303 GAAATAAAGCCAGGG
65 GAAATAAAGCCAGGG
* *
3716318 TTGGAGTATCCCCTAGGAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTTAG
1 TTGGAGTATCCCCGAGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTTAG
* ***
3716383 GAATAAAGTTGGGG
66 AAATAAAGCCAGGG
** * ** *
3716397 TTGGAGTATCCCCTCGGAAATAACAAGGTTGGAGTATCCTCGATTA
1 TTGGAGTATCCCCGAGAAAATAACGGGGTTGGAGTATCCCCGATTA
3716443 AGAAAAATTG
Statistics
Matches: 112, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
78 2 0.02
79 110 0.98
ACGTcount: A:0.32, C:0.15, G:0.26, T:0.27
Consensus pattern (79 bp):
TTGGAGTATCCCCGAGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTTAG
AAATAAAGCCAGGG
Found at i:3718922 original size:20 final size:20
Alignment explanation
Indices: 3718899--3718951 Score: 106
Period size: 20 Copynumber: 2.6 Consensus size: 20
3718889 CAAAGCAGCA
3718899 TGTATCGATACATCTGGGTG
1 TGTATCGATACATCTGGGTG
3718919 TGTATCGATACATCTGGGTG
1 TGTATCGATACATCTGGGTG
3718939 TGTATCGATACAT
1 TGTATCGATACAT
3718952 TTAAGGGTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.23, C:0.15, G:0.26, T:0.36
Consensus pattern (20 bp):
TGTATCGATACATCTGGGTG
Found at i:3727574 original size:13 final size:13
Alignment explanation
Indices: 3727556--3727586 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
3727546 ACATTTCTTC
3727556 ATGTATCGATACA
1 ATGTATCGATACA
3727569 ATGTATCGATACA
1 ATGTATCGATACA
*
3727582 TTGTA
1 ATGTA
3727587 CCATGTATCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.35
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3727574 original size:33 final size:33
Alignment explanation
Indices: 3727536--3727602 Score: 102
Period size: 33 Copynumber: 2.0 Consensus size: 33
3727526 GTTACAAGCT
3727536 ATGTATCGATACATT-T-CTTCATGTATCGATACA
1 ATGTATCGATACATTGTAC--CATGTATCGATACA
3727569 ATGTATCGATACATTGTACCATGTATCGATACA
1 ATGTATCGATACATTGTACCATGTATCGATACA
3727602 A
1 A
3727603 ATAATGATAG
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
33 30 0.94
34 1 0.03
35 1 0.03
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.36
Consensus pattern (33 bp):
ATGTATCGATACATTGTACCATGTATCGATACA
Found at i:3728270 original size:18 final size:18
Alignment explanation
Indices: 3728243--3728289 Score: 85
Period size: 18 Copynumber: 2.6 Consensus size: 18
3728233 AATCTTGTAA
*
3728243 AGAATGGAGATTGTTGCC
1 AGAATAGAGATTGTTGCC
3728261 AGAATAGAGATTGTTGCC
1 AGAATAGAGATTGTTGCC
3728279 AGAATAGAGAT
1 AGAATAGAGAT
3728290 AAACTTTGAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.36, C:0.09, G:0.30, T:0.26
Consensus pattern (18 bp):
AGAATAGAGATTGTTGCC
Found at i:3729069 original size:475 final size:475
Alignment explanation
Indices: 3728284--3729362 Score: 1544
Period size: 475 Copynumber: 2.3 Consensus size: 475
3728274 TTGCCAGAAT
* * * *
3728284 AGAGATAAACTTTGATTCTATCAACAACGGTGGAAAGAAAGGCTTTTCTTGCG--AC--ATCATC
1 AGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACAAAGCATC
* * * * * *
3728345 AATGTCATTTATCCTAGTGAAGAGAATGTGTTTTGGCTTCCCAATCTAGAAAAGACTGGGGACTA
66 AATGTCATGTATCCTAATAAAGAGAATGTGTTTTGGCTTCCTAATCTAGAAAAGAATGGGGACTG
* * * **
3728410 TTATAAAAATCGATGCTTGTCTTATTTAGGGGATGAACTTTGATGTTATGAAAAATAGGGCAAAG
131 TTATAAAAATCAATACTTGTCTTATTTAAGGGATGAACTTTGATGTTACAAAAAATAGGGCAAAG
*
3728475 AAAAGATTTCCATGCAAAAGAAAATCATTAATATCATTTATCCTAATAAGGAGAATGTGTTTGTA
196 AAAAGATTTCCATACAAAAGAAAATCATTAATATCATTTATCCTAATAAGGAGAATGTGTTTGTA
* * * *
3728540 ATGCCAAATCACAAATTGAATGAAGATCATTACTAAAATCCATGTTTGTCTCATTTGAGGCACGA
261 ATACCAAATCACAAATTAAATGAAAATCATTACTAAAATCCATGTTTATCTCATTTGAGGCACGA
* * *
3728605 ACTTAGACTTTAAAAAAATTGGTGGGAGAAATGCCTTTCTTACGAAACCAAAGCATCAATATTGT
326 ACTTAGACTTTAAAAAAATTGGTGGGAGAAATGCCTTTATTACGAAACCAAAACATCAATATTAT
* ** *
3728670 GTATCCTCATAAGAAGACTATGTTTATGGTGCTTAATCCTGAAAAGAATGGAGATTAGTATGAGT
391 GTATCCTAATAAGAAGACTATGTTTATGGCACCTAATCCTGAAAAGAATGGAGATTAGTATGAGT
*
3728735 ATTCA-AGGTTATCTTATTTG
456 ATTCATA-GTTATCTTATTTA
* * *
3728755 AGAGACAAACTTTAATTCTATAAAAAACGGTGGAAA-AAAAGCTTTTCTTGGGACACCAAAGCAT
1 AGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACA-CAAAGCAT
* *
3728819 CAATGCCATGTATCCTAATAAAGAGAATGCGTTTTGGCTTCCTAATCTAGAAAAGAATGGGGACT
65 CAATGTCATGTATCCTAATAAAGAGAATGTGTTTTGGCTTCCTAATCTAGAAAAGAATGGGGACT
* * *
3728884 GTTATGAGAATCAATACTTGTCTTATTTAAGGGATGAACTTTGATTTTACAAAAAATAGGGCAAA
130 GTTATAAAAATCAATACTTGTCTTATTTAAGGGATGAACTTTGATGTTACAAAAAATAGGGCAAA
*
3728949 GAAAAGATTTCCATACAAAAGAAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTGT
195 GAAAAGATTTCCATACAAAAGAAAATCATTAATATCATTTATCCTAATAAGGAGAATGTGTTTGT
* * * * **
3729014 AGTACCTAATCACAAATTAAATGAAAATCTTTACTAGAATCCATGTTTATCTCATTTGAGGTGCG
260 AATACCAAATCACAAATTAAATGAAAATCATTACTAAAATCCATGTTTATCTCATTTGAGGCACG
* ** * *
3729079 AACTTAGACTTTAAAAAAATTGGTGGGAGAAATGCTTTTATTGTGACACCAAAACATTAATATTA
325 AACTTAGACTTTAAAAAAATTGGTGGGAGAAATGCCTTTATTACGAAACCAAAACATCAATATTA
* *
3729144 TGTATCCTAATGAGAAGACTATGTTTATGGCACCTAATCCTGAAAAGAATGGGGATTAGTATGAG
390 TGTATCCTAATAAGAAGACTATGTTTATGGCACCTAATCCTGAAAAGAATGGAGATTAGTATGAG
* *
3729209 TATTCATATTTGTCTTATTTA
455 TATTCATAGTTATCTTATTTA
*
3729230 AGAGGCAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACATCAAAGCAT
1 AGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACA-CAAAGCAT
* * **
3729295 CAATGTCATGTATCCTAATAAAGGGAATGTGTTTTTGG-TT-CTCAATCTTGAAAAGAATGAAGA
65 CAATGTCATGTATCCTAATAAAGAGAATGTG-TTTTGGCTTCCT-AATCTAGAAAAGAATGGGGA
3729358 CTGTT
128 CTGTT
3729363 GCAAGAATCT
Statistics
Matches: 536, Mismatches: 63, Indels: 13
0.88 0.10 0.02
Matches are distributed among these distances:
470 14 0.03
471 32 0.06
472 1 0.00
473 1 0.00
475 403 0.75
476 79 0.15
477 6 0.01
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (475 bp):
AGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACAAAGCATC
AATGTCATGTATCCTAATAAAGAGAATGTGTTTTGGCTTCCTAATCTAGAAAAGAATGGGGACTG
TTATAAAAATCAATACTTGTCTTATTTAAGGGATGAACTTTGATGTTACAAAAAATAGGGCAAAG
AAAAGATTTCCATACAAAAGAAAATCATTAATATCATTTATCCTAATAAGGAGAATGTGTTTGTA
ATACCAAATCACAAATTAAATGAAAATCATTACTAAAATCCATGTTTATCTCATTTGAGGCACGA
ACTTAGACTTTAAAAAAATTGGTGGGAGAAATGCCTTTATTACGAAACCAAAACATCAATATTAT
GTATCCTAATAAGAAGACTATGTTTATGGCACCTAATCCTGAAAAGAATGGAGATTAGTATGAGT
ATTCATAGTTATCTTATTTA
Found at i:3729241 original size:158 final size:157
Alignment explanation
Indices: 3728604--3729313 Score: 341
Period size: 158 Copynumber: 4.5 Consensus size: 157
3728594 TTGAGGCACG
* * * * *
3728604 AACTTAGACTTTA-AAAAAATTGGTGGGAGAAATGCCTTTCTT-ACGAAACCAAAGCATCAATAT
1 AACTTAGACTTTACAAAAAATTGGTGGAAGAAAAGCTTTTATTGA-GAAACCAAAACATCAATAT
** * * ** *
3728667 TGTGTATCCTCATAAGAAGACTATGTTTATGGTGCTTAATCCTGAAAAGAATGGAGATTAGTATG
65 CATGTATCCTAATGAGAAGACTATGTTTATGGCACCTAATCCTGAAAAGAATGGAGATT-GTATG
* * *
3728732 AGTATTCA-AGGTTATCTTATTTGAGAGACA
129 AGTATTCATA-TTTATCTTATTTAAG-GGCA
* * * * * * * *
3728762 AACTTTA-A-TTCTATAAAAAA-CGGTGGAAAAAAAGCTTTTCTTGGGACACCAAAGCATCAATG
1 AAC-TTAGACTT-TACAAAAAATTGGTGGAAGAAAAGCTTTTATTGAGAAACCAAAACATCAATA
* ** * * *
3728824 CCATGTATCCTAAT-A-AAGAGAATGCGTTT-TGGCTTCCTAAT-CTAGAAAAGAATGGGGACTG
64 TCATGTATCCTAATGAGAAGACTAT--GTTTATGGC-ACCTAATCCT-GAAAAGAATGGAGATTG
* * *
3728885 TTATGAG-AATCAATACTTGTCTTATTTAAGGG-A
125 -TATGAGTATTC-ATATTTATCTTATTTAAGGGCA
* * * * * * * ** *
3728918 TGAACTTTGATTTTACAAAAAATAGG-GCAAAGAAAAGATTTCCA-T-ACAAAAGAAAATCATTA
1 --AACTTAGACTTTACAAAAAATTGGTG-GAAGAAAAGCTTT-TATTGAGAAACCAAAA-CATCA
* * * * * * * * *
3728980 ATATCATTTATCCTAATGAGGAGAATGTGTTTGTAGTACCTAATCAC--AAATTA-AATGAAAAT
61 ATATCATGTATCCTAATGAGAAGACTATGTTTATGGCACCTAATC-CTGAAA--AGAATGGAGAT
* * * * * * *
3729042 CTTTACT-AGAATCCATGTTTATCTCATTTGAGGTGCG
123 -TGTA-TGAGTATTCATATTTATCTTATTTAAGG-GCA
* * * * * *
3729079 AACTTAGACTTTA-AAAAAATTGGTGGGAGAAATGCTTTTATTGTGACACCAAAACATTAATATT
1 AACTTAGACTTTACAAAAAATTGGTGGAAGAAAAGCTTTTATTGAGAAACCAAAACATCAATATC
*
3729143 ATGTATCCTAATGAGAAGACTATGTTTATGGCACCTAATCCTGAAAAGAATGGGGATTAGTATGA
66 ATGTATCCTAATGAGAAGACTATGTTTATGGCACCTAATCCTGAAAAGAATGGAGATT-GTATGA
*
3729208 GTATTCATATTTGTCTTATTTAAGAGGCA
130 GTATTCATATTTATCTTATTTAAG-GGCA
* * * * * * *
3729237 AACTTTGA-TTCTATC-AAAAA-CGGTGGAAAGAAAAGCTTTTCTTGCGACATCAAAGCATCAAT
1 AACTTAGACTT-TA-CAAAAAATTGGTGG-AAGAAAAGCTTTTATTGAGAAACCAAAACATCAAT
*
3729299 GTCATGTATCCTAAT
63 ATCATGTATCCTAAT
3729314 AAAGGGAATG
Statistics
Matches: 403, Mismatches: 105, Indels: 87
0.68 0.18 0.15
Matches are distributed among these distances:
156 7 0.02
157 22 0.05
158 216 0.54
159 144 0.36
160 9 0.02
161 5 0.01
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.32
Consensus pattern (157 bp):
AACTTAGACTTTACAAAAAATTGGTGGAAGAAAAGCTTTTATTGAGAAACCAAAACATCAATATC
ATGTATCCTAATGAGAAGACTATGTTTATGGCACCTAATCCTGAAAAGAATGGAGATTGTATGAG
TATTCATATTTATCTTATTTAAGGGCA
Found at i:3730940 original size:20 final size:20
Alignment explanation
Indices: 3730915--3731011 Score: 69
Period size: 20 Copynumber: 4.8 Consensus size: 20
3730905 TCCCGTAGCC
3730915 ATGTATCGATACAATTCATA
1 ATGTATCGATACAATTCATA
*
3730935 ATGTATCGATAC-ATTGATTTGAA
1 ATGTATCGATACAATTCA--T--A
*
3730958 ATTGTAATC-ATTACAA-GC--A
1 A-TGT-ATCGA-TACAATTCATA
*
3730977 ATGTATCGATACAATTCATC
1 ATGTATCGATACAATTCATA
3730997 ATGTATCGATACAAT
1 ATGTATCGATACAAT
3731012 GTACCATTTA
Statistics
Matches: 60, Mismatches: 5, Indels: 24
0.67 0.06 0.27
Matches are distributed among these distances:
17 8 0.13
18 5 0.08
19 6 0.10
20 27 0.45
21 1 0.02
23 2 0.03
24 4 0.07
25 6 0.10
26 1 0.02
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.35
Consensus pattern (20 bp):
ATGTATCGATACAATTCATA
Found at i:3731023 original size:20 final size:20
Alignment explanation
Indices: 3730977--3731030 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
3730967 ATTACAAGCA
*
3730977 ATGTATCGATACAATTCATC
1 ATGTATCGATACAATTCACC
3730997 ATGTATCGATACAATGT-ACC
1 ATGTATCGATACAAT-TCACC
*
3731017 ATTTATCGATACAA
1 ATGTATCGATACAA
3731031 ACATTGATAG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 30 0.97
21 1 0.03
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (20 bp):
ATGTATCGATACAATTCACC
Found at i:3731103 original size:19 final size:19
Alignment explanation
Indices: 3731058--3731131 Score: 87
Period size: 20 Copynumber: 3.8 Consensus size: 19
3731048 ACTGCCAGTT
3731058 TCATGTATCGATACAATTG-
1 TCATGTATCGATACAA-TGA
*
3731077 TCCATGTATCGATGCAATGA
1 T-CATGTATCGATACAATGA
*
3731097 TCATGTATCGATACAAAGCA
1 TCATGTATCGATACAATG-A
*
3731117 TGATGTATCGATACA
1 TCATGTATCGATACA
3731132 TCTGGGTGTG
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
19 18 0.38
20 30 0.62
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.31
Consensus pattern (19 bp):
TCATGTATCGATACAATGA
Found at i:3738747 original size:78 final size:78
Alignment explanation
Indices: 3738637--3738842 Score: 234
Period size: 78 Copynumber: 2.6 Consensus size: 78
3738627 GAGATAATAA
* * * * * * *
3738637 CGGGGTTGGAGTGTTCCCTTGAAAATAACGGGGCTGGAGTATCCCCGGTTGTGAGAAATCGATGA
1 CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAAT-A
*
3738702 -TTAGAAAAAAAAT
65 TTTAGAAAAAAAAG
* *
3738715 CGGGATTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATAT
1 CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATAT
* ** *
3738780 TTTGGGAATAAAG
66 TTAGAAAAAAAAG
* * *
3738793 CTGGGGTTGGAGTATCCCCTCGGAAGTAACGAGGTTGGAGTATCCCCGAT
1 C-GGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGAT
3738843 GAAATAACAA
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
77 1 0.01
78 63 0.59
79 43 0.40
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.25
Consensus pattern (78 bp):
CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATAT
TTAGAAAAAAAAG
Found at i:3738837 original size:28 final size:28
Alignment explanation
Indices: 3738797--3738865 Score: 93
Period size: 28 Copynumber: 2.5 Consensus size: 28
3738787 ATAAAGCTGG
** * *
3738797 GGTTGGAGTATCCCCTCGGAAGTAACGA
1 GGTTGGAGTATCCCCGAGGAAATAACAA
*
3738825 GGTTGGAGTATCCCCGATGAAATAACAA
1 GGTTGGAGTATCCCCGAGGAAATAACAA
3738853 GGTTGGAGTATCC
1 GGTTGGAGTATCC
3738866 TCGACTGTGA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (28 bp):
GGTTGGAGTATCCCCGAGGAAATAACAA
Found at i:3739067 original size:51 final size:51
Alignment explanation
Indices: 3738853--3739074 Score: 210
Period size: 52 Copynumber: 4.3 Consensus size: 51
3738843 GAAATAACAA
* * * * * *
3738853 GGTTGGAGTATCCTCGACTGTGAAAAATTGGTATTTTTGGAAATAAAATCAG
1 GGTTGGAGTATCCCCGATTATGAAAAATTAGTA-TTTTGGAAATAAAACCGG
* * * * * * *
3738905 AGTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTCGAAAATAAAACCGG
1 GGTTGGAGTATCCCCGATT-ATGAAAAATTAGTATTTTGGAAATAAAACCGG
* * * * * *
3738957 GATTGGAGTATCCCCGATTGTGGAAACATTAGTGTTTTAGCAATAAAACCGG
1 GGTTGGAGTATCCCCGATTAT-GAAAAATTAGTATTTTGGAAATAAAACCGG
* * **
3739009 GGTTGGAGTATCCCCGATTATGAAAAATCAATATTTTGGAAATAAAGTCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTAGTATTTTGGAAATAAAACCGG
3739060 GGTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
3739075 TCGAAAATAA
Statistics
Matches: 136, Mismatches: 32, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
51 37 0.27
52 89 0.65
53 10 0.07
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTATGAAAAATTAGTATTTTGGAAATAAAACCGG
Found at i:3739070 original size:263 final size:263
Alignment explanation
Indices: 3738743--3739240 Score: 734
Period size: 263 Copynumber: 1.9 Consensus size: 263
3738733 TCGAAAATAA
* *
3738743 CGGGGTTGGAGTATCCCCAATTATGAGAAATCAATATTTTGGGAATAAAGCTGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCAATTATGAAAAATCAATATTTTGGAAATAAAGCTGGGGTTGGAGTAT
* * * *
3738808 CCCCTCGGAAGTAACGAGGTTGGAGTATCCCCGATGAAATAACAAGGTTGGAGTATCCTCGACTG
66 CCCCTCGAAAATAACGAGGTTGGAGTATCCACGATG-AATAACAAGGTTGGAGTATCCCCGACTG
* *
3738873 TGAA-AAATTGGT-ATTTTTGGAAATAAAATCAGAGTTGGAGTATCCCCGATTAAAGGAAAATTG
130 TGAAGAAATTGGTGATTTTTGGAAATAAAATCAGAGTTAGAGTATCCCCGATTAAA-GAAAATTA
* * *
3738936 GTGTTTCGAAAATAAAACCG-GGATTGGAGTATCCCCGATTGTGGAAACATTAGTGTTTTAGCAA
194 GTGTTTCAAAAATAAAACCGAAG-TTGGAATATCCCCGATTGTGGAAACATTAGTGTTTTAGCAA
3739000 TAAAAC
258 TAAAAC
*
3739006 CGGGGTTGGAGTATCCCCGATTATGAAAAATCAATATTTTGGAAATAAAG-TCGGGGTTGGAGTA
1 CGGGGTTGGAGTATCCCCAATTATGAAAAATCAATATTTTGGAAATAAAGCT-GGGGTTGGAGTA
* * ** *
3739070 TCCCCTCGAAAATAACGGGGTTGGAGTATCCACGATGATTAACGGGGTTGGAGTATCCCCGATTG
65 TCCCCTCGAAAATAACGAGGTTGGAGTATCCACGATGAATAACAAGGTTGGAGTATCCCCGACTG
* * *
3739135 TGAAGAAATTGGTGTTTTTTGGAAATAAAATCGGAGTTAGAGTATCCCCGATTATAGAAAATTAG
130 TGAAGAAATTGGTGATTTTTGGAAATAAAATCAGAGTTAGAGTATCCCCGATTAAAGAAAATTAG
* *
3739200 TGTTTTAAAAATAAAATCGAAGTTGGAATATCCCCGATTGT
195 TGTTTCAAAAATAAAACCGAAGTTGGAATATCCCCGATTGT
3739241 AGAGAATTGA
Statistics
Matches: 209, Mismatches: 22, Indels: 8
0.87 0.09 0.03
Matches are distributed among these distances:
262 28 0.13
263 142 0.68
264 39 0.19
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (263 bp):
CGGGGTTGGAGTATCCCCAATTATGAAAAATCAATATTTTGGAAATAAAGCTGGGGTTGGAGTAT
CCCCTCGAAAATAACGAGGTTGGAGTATCCACGATGAATAACAAGGTTGGAGTATCCCCGACTGT
GAAGAAATTGGTGATTTTTGGAAATAAAATCAGAGTTAGAGTATCCCCGATTAAAGAAAATTAGT
GTTTCAAAAATAAAACCGAAGTTGGAATATCCCCGATTGTGGAAACATTAGTGTTTTAGCAATAA
AAC
Found at i:3739091 original size:28 final size:29
Alignment explanation
Indices: 3739057--3739129 Score: 98
Period size: 27 Copynumber: 2.6 Consensus size: 29
3739047 GAAATAAAGT
*
3739057 CGGGGTTGGAGTATCCCCTCGA-AAATAA
1 CGGGGTTGGAGTATCCCCACGATAAATAA
* *
3739085 CGGGGTTGGAGTAT--CCACGATGATTAA
1 CGGGGTTGGAGTATCCCCACGATAAATAA
3739112 CGGGGTTGGAGTATCCCC
1 CGGGGTTGGAGTATCCCC
3739130 GATTGTGAAG
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
26 5 0.13
27 18 0.46
28 14 0.36
29 2 0.05
ACGTcount: A:0.23, C:0.21, G:0.33, T:0.23
Consensus pattern (29 bp):
CGGGGTTGGAGTATCCCCACGATAAATAA
Found at i:3741601 original size:33 final size:33
Alignment explanation
Indices: 3741563--3741629 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
3741553 AAAATTTCCA
* ***
3741563 AATGTATGGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
3741596 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
3741629 A
1 A
3741630 TTTCCTTAGC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.43, C:0.15, G:0.16, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:3741602 original size:13 final size:13
Alignment explanation
Indices: 3741584--3741609 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3741574 ACAAAGATCC
3741584 ATGTATCGATACA
1 ATGTATCGATACA
3741597 ATGTATCGATACA
1 ATGTATCGATACA
3741610 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3741670 original size:13 final size:13
Alignment explanation
Indices: 3741652--3741676 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3741642 TAGCTAATTA
3741652 TGTATCGATACAT
1 TGTATCGATACAT
3741665 TGTATCGATACA
1 TGTATCGATACA
3741677 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3742522 original size:55 final size:56
Alignment explanation
Indices: 3742438--3743448 Score: 1037
Period size: 60 Copynumber: 17.4 Consensus size: 56
3742428 ATAAAGTGTA
** * * *
3742438 TCCTGCTCTTTGAGGACTAAAAACTGCCACCAACTCGTGTGGGGTTT-GAAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAGAAAGGCG
* *
3742493 TCCTGCTTTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT-GAAAGGCA
1 TCCTGCTCTTTGAGGACTGGAAA-GTGCCACCAACTTGTGTGGGCTTTAGAAAGGCG
* * *
3742548 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTAGGCTTTA-AGAGGTG
1 TCCTGCTCTTTGAGGACTGGAAA-GTGCCACCAACTTGTGTGGGCTTTAGAAAGGCG
* *
3742603 TCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT---AG-AAAGGCG
* * * *
3742663 TCCCGCTCTTTGAGGACTGG-AGGTGCCACCAACTTATGTGGACTTTAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT---AG-AAAGGCG
* *
3742722 TCCTGCTCTTTGAGGATTGGACAA-TGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCA
1 TCCTGCTCTTTGAGGACTGGA-AAGTGCCACCAACTTGTGTGGGCTTT---A-GA-AAGGCG
* * *
3742783 TCCTGCTCCTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTA-AAAGGGG
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAGAAAGGCG
* *
3742838 TCTTGCTCTTTGGGGAC-GGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAA-GTGCCACCAACTTGTGTGGGCTTT---AG-AAAGGCG
* *
3742898 TCCCGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT---AG-AAAGGCG
* * * *
3742958 TCCTGCTCTTTAAGGATTGGAAAATGCCACCAACTTGTGTTGGCTTTAAAGGAGAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT--A-GA-AAGGCG
* *
3743018 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTA-AAAGGGG
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAGAAAGGCG
*
3743073 TCCTGCTCTTT-AGGGAC-GGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGCA
1 TCCTGCTCTTTGA-GGACTGGAAA-GTGCCACCAACTTGTGTGGGCTTT---AG-AAAGGCG
* *
3743133 TCCCGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT---A-GA-AAGGCG
* * *
3743194 TCATGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTA-AAAGGGG
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAGAAAGGCG
* *
3743249 TCCTGCTCTTTGGGGAC-GGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGCA
1 TCCTGCTCTTTGAGGACTGGAAA-GTGCCACCAACTTGTGTGGGCTTT---AG-AAAGGCG
* * * *
3743309 TCCCGCTCTTTGAGGACTGGAAAATGTCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGTG
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT---A-GA-AAGGCG
* *
3743370 TCCTACTCTTTGAGGACT-GAGAAGTGCCACCAACTTGTGTGGGCTTTA-AAAGGTG
1 TCCTGCTCTTTGAGGACTGGA-AAGTGCCACCAACTTGTGTGGGCTTTAGAAAGGCG
*
3743425 TCCTGCTCTTTGAGGACTGAAAAG
1 TCCTGCTCTTTGAGGACTGGAAAG
3743449 CGAAAGGAGA
Statistics
Matches: 829, Mismatches: 83, Indels: 88
0.83 0.08 0.09
Matches are distributed among these distances:
54 16 0.02
55 290 0.35
56 9 0.01
58 8 0.01
59 56 0.07
60 292 0.35
61 158 0.19
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (56 bp):
TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAGAAAGGCG
Found at i:3742891 original size:235 final size:234
Alignment explanation
Indices: 3742442--3743421 Score: 1252
Period size: 235 Copynumber: 4.2 Consensus size: 234
3742432 AGTGTATCCT
* * * *
3742442 GCTCTTTGAGGACT-AAAAACTGCCACCAACTCGTGTGGGGTTT----G-AAAGGCGTCCTGCTT
1 GCTCTTTGAGGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTC
*
3742501 TTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT---GA-AAGGCATCCTGCTCTTTGA
65 TTTGAGGATTGGAAA--TGCCACCAACTTGTGTGGGCTTTAAAGAGAAGGCATCCTGCTCTTTGA
* * * *
3742561 GGACT-GAAAGGTGCCACCAACTTGTGTAGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTAGAA
128 GGACTGGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGGGTCCTGCTCTTTGAGGACTGGAA
3742625 AATGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGCGTCCC
193 AATGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGCGTCCC
** * *
3742667 GCTCTTTGAGGACTGG-AGGTGCCACCAACTTATGTGGACTTTAAAAGAAAAGGCGTCCTGCTCT
1 GCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCT
*
3742731 TTGAGGATTGGACAATGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCATCCTGCTCCTTGA
66 TTGAGGATTGGA-AATGCCACCAACTTGTGTGGGCTTT-AAA-GAGAAGGCATCCTGCTCTTTGA
* * *
3742796 GGACTGGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGGGTCTTGCTCTTTGGGGAC-GGAA
128 GGACTGGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGGGTCCTGCTCTTTGAGGACTGGAA
*
3742859 AGGTGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGCGTCCC
193 A-ATGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGCGTCCC
3742902 GCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCT
1 GCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCT
* * *
3742967 TTAAGGATTGGAAAATGCCACCAACTTGTGTTGGCTTTAAAGGAGAAGGCGTCCTGCTCTTTGAG
66 TTGAGGATTGG-AAATGCCACCAACTTGTGTGGGCTTTAAA-GAGAAGGCATCCTGCTCTTTGAG
*
3743032 GACTGGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGGGTCCTGCTCTTT-AGGGAC-GGAA
129 GACTGGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGGGTCCTGCTCTTTGA-GGACTGGAA
* *
3743094 AGGTGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGCATCCC
193 A-ATGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGCGTCCC
* *
3743137 GCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCATGCTC
1 GCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAGGCGTCCTGCTC
* * * *
3743202 TTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAA-AG--GG-GTCCTGCTCTTTGGG
65 TTTGAGGA-TTGGAAATGCCACCAACTTGTGTGGGCTTTAAAGAGAAGGCATCCTGCTCTTTGAG
** *
3743263 GAC-GGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGCATCCCGCTCTTTGAGGACT
129 GACTGGAAAGGTGCCACCAACTTGTGTGGGCTTT-----AAAAGGGGTCCTGCTCTTTGAGGACT
* * * * *
3743327 GGAAAATGTCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGTGTCCT
189 GGAAAATGCCACCAACTTGTGTGGGCTTTGAAA-GAAAAGGCGTCCC
* *
3743374 ACTCTTTGAGGACT-GAGAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
1 GCTCTTTGAGGACTGGA-AAATGCCACCAACTTGTGTGGGCTTTAAAAG
3743422 GTGTCCTGCT
Statistics
Matches: 675, Mismatches: 49, Indels: 51
0.87 0.06 0.07
Matches are distributed among these distances:
224 19 0.03
225 15 0.02
228 1 0.00
229 46 0.07
230 6 0.01
231 43 0.06
232 2 0.00
234 8 0.01
235 296 0.44
236 178 0.26
237 61 0.09
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (234 bp):
GCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCT
TTGAGGATTGGAAATGCCACCAACTTGTGTGGGCTTTAAAGAGAAGGCATCCTGCTCTTTGAGGA
CTGGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGGGTCCTGCTCTTTGAGGACTGGAAAAT
GCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGCGTCCC
Found at i:3742911 original size:176 final size:174
Alignment explanation
Indices: 3742437--3743440 Score: 1185
Period size: 176 Copynumber: 5.8 Consensus size: 174
3742427 AATAAAGTGT
* * * *
3742437 ATCCTGCTCTTTGAGGACT-AAAAACTGCCACCAACTCGTGTGGGGTTT----GAAAGGCGTCCT
1 ATCCTGCTCTTTGAGGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTTAAAAGAGAGGCGTCCT
* *
3742497 GCTTTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAGGCATCCTGCTCTTTG
65 GCTCTTTGAGGACTGGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAAGGCGTCCTGCTCTTTG
* *
3742560 AGGACT-GAAAGGTGCCACCAACTTGTGTAGGCTTT--AAG---AGGT
129 AGGA-TGGAAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGC
* * * * *
3742602 GTCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGCGTCCC
1 ATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAG-AGAGGCGTCCT
* * *
3742667 GCTCTTTGAGGACTGG-AGGTGCCACCAACTTATGTGGACTTTAAAAGAAAAGGCGTCCTGCTCT
65 GCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT----GAAAAGGCGTCCTGCTCT
*
3742731 TTGAGGATTGGACAA-TGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGC
126 TTGAGGA-TGGA-AAGTGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAGGC
* * * *
3742782 ATCCTGCTCCTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTT-AAA-AG-GG-GTCTTG
1 ATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGAGAGGCGTCCTG
* *
3742843 CTCTTTGGGGAC-GGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGCGTCCCGCTCT
66 CTCTTTGAGGACTGGAAA-GTGCCACCAACTTGTGTGGGCTTT----GAAAAGGCGTCCTGCTCT
*
3742907 TTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGC
126 TTGAGGA-TGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGC
* * * * *
3742957 GTCCTGCTCTTTAAGGATTGGAAAATGCCACCAACTTGTGTTGGCTTTAAAGGAGAAGGCGTCCT
1 ATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGAG-AGGCGTCCT
* *
3743022 GCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTT-AAAAGGGGTCCTGCTCTTT-A
65 GCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGGCGTCCTGCTCTTTGA
* *
3743085 GGGACGGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGC
130 -GGATGGAAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGC
* *
3743132 ATCCCGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCA
1 ATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAA-GAG-AGGCGTCC
* *
3743197 TGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTT-AAAAGGGGTCCTGCTCTTTG
64 TGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGGCGTCCTGCTCTTTG
* * *
3743261 GGGACGGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGGC
129 AGGATGGAAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGC
* * *
3743308 ATCCCGCTCTTTGAGGACTGGAAAATGTCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGTGTCC
1 ATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAA-GAG-AGGCGTCC
* *
3743373 TACTCTTTGAGGACT-GAGAAGTGCCACCAACTTGTGTGGGCTTT-AAAAGGTGTCCTGCTCTTT
64 TGCTCTTTGAGGACTGGA-AAGTGCCACCAACTTGTGTGGGCTTTGAAAAGGCGTCCTGCTCTTT
3743436 GAGGA
128 GAGGA
3743441 CTGAAAAGCG
Statistics
Matches: 745, Mismatches: 60, Indels: 57
0.86 0.07 0.07
Matches are distributed among these distances:
165 39 0.05
166 4 0.01
169 23 0.03
170 24 0.03
171 1 0.00
173 1 0.00
174 53 0.07
175 169 0.23
176 332 0.45
177 4 0.01
179 5 0.01
180 86 0.12
181 4 0.01
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (174 bp):
ATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGAGAGGCGTCCTG
CTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGGCGTCCTGCTCTTTGAG
GATGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGC
Found at i:3756969 original size:79 final size:79
Alignment explanation
Indices: 3756858--3757064 Score: 229
Period size: 79 Copynumber: 2.6 Consensus size: 79
3756848 GAGATAATAA
* * * * * * * * *
3756858 TGGGGTTGGAGTGTTCCCTTGAAAATAACGGGGCTGGAGTACCCCCGGTTGTGAGAAATCGATGA
1 TGGGATTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAAT-A
*
3756923 -TTAGAAAAAAAA-A
65 TTTAGAAAAAAAAGC
*
3756936 TCGGGATTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATA
1 T-GGGATTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATA
* ** *
3757001 TTTTGGGAATAAAGC
65 TTTAGAAAAAAAAGC
* *
3757016 TGGGATTGGAGTATCCCCTCGGAAGTAACGGGGTTGGAGTATCCCCGAT
1 TGGGATTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGAT
3757065 GAAATAACGA
Statistics
Matches: 108, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
78 2 0.02
79 105 0.97
80 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.25
Consensus pattern (79 bp):
TGGGATTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATAT
TTAGAAAAAAAAGC
Found at i:3757061 original size:28 final size:28
Alignment explanation
Indices: 3757021--3757087 Score: 89
Period size: 28 Copynumber: 2.4 Consensus size: 28
3757011 AAAGCTGGGA
** * *
3757021 TTGGAGTATCCCCTCGGAAGTAACGGGG
1 TTGGAGTATCCCCGAGGAAATAACGAGG
*
3757049 TTGGAGTATCCCCGATGAAATAACGAGG
1 TTGGAGTATCCCCGAGGAAATAACGAGG
3757077 TTGGAGTATCC
1 TTGGAGTATCC
3757088 TCGACTGTGA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.24
Consensus pattern (28 bp):
TTGGAGTATCCCCGAGGAAATAACGAGG
Found at i:3757214 original size:52 final size:51
Alignment explanation
Indices: 3757149--3757258 Score: 139
Period size: 52 Copynumber: 2.1 Consensus size: 51
3757139 CTTGATTAAA
* *
3757149 GGAAAATTGGTGTTTCAAAAATAAAACTGGGATTGGAGTATCCCCGATTGT
1 GGAAAATTAGTGTTTCAAAAATAAAACCGGGATTGGAGTATCCCCGATTGT
* ** * *
3757200 GGAAACATTAGTGTTTTAGCAATAAAACCGGGGTTGGAGTATCCCCGATTAT
1 GGAAA-ATTAGTGTTTCAAAAATAAAACCGGGATTGGAGTATCCCCGATTGT
*
3757252 GAAAAAT
1 GGAAAAT
3757259 CAATATTTTG
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
51 7 0.14
52 43 0.86
ACGTcount: A:0.35, C:0.13, G:0.25, T:0.28
Consensus pattern (51 bp):
GGAAAATTAGTGTTTCAAAAATAAAACCGGGATTGGAGTATCCCCGATTGT
Found at i:3757738 original size:20 final size:20
Alignment explanation
Indices: 3757715--3757788 Score: 94
Period size: 20 Copynumber: 3.6 Consensus size: 20
3757705 ATAATTCAAA
3757715 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
3757735 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
*
3757756 GCATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
3757776 GTATCGATACATG
1 GTATCGATACATG
3757789 AAAAAGATGT
Statistics
Matches: 43, Mismatches: 10, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
20 28 0.65
21 15 0.35
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.30
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:3757763 original size:21 final size:21
Alignment explanation
Indices: 3757733--3757808 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
3757723 ACATGTTGCA
3757733 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
* ****
3757754 ATGCATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
3757774 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
3757795 ATGTATCGATACAT
1 ATGTATCGATACAT
3757809 TTCTTGGCAG
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
20 15 0.34
21 29 0.66
ACGTcount: A:0.41, C:0.13, G:0.18, T:0.28
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:3757765 original size:41 final size:41
Alignment explanation
Indices: 3757717--3757808 Score: 175
Period size: 41 Copynumber: 2.2 Consensus size: 41
3757707 AATTCAAAGT
3757717 ATCGATACATGTTGCAATGTATCGATACATGAAAAAGATGC
1 ATCGATACATGTTGCAATGTATCGATACATGAAAAAGATGC
*
3757758 ATCGATACATGTTGCAATGTATCGATACATGAAAAAGATGT
1 ATCGATACATGTTGCAATGTATCGATACATGAAAAAGATGC
3757799 ATCGATACAT
1 ATCGATACAT
3757809 TTCTTGGCAG
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 50 1.00
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.28
Consensus pattern (41 bp):
ATCGATACATGTTGCAATGTATCGATACATGAAAAAGATGC
Found at i:3757865 original size:13 final size:13
Alignment explanation
Indices: 3757847--3757872 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3757837 TACAGCAAGT
3757847 ATGTATCGATACA
1 ATGTATCGATACA
3757860 ATGTATCGATACA
1 ATGTATCGATACA
3757873 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3760111 original size:21 final size:21
Alignment explanation
Indices: 3760078--3760122 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
3760068 TTGCAAGTTG
*
3760078 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
3760100 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
3760120 AAA
1 AAA
3760123 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:3761946 original size:15 final size:15
Alignment explanation
Indices: 3761926--3761956 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
3761916 TAAAAATGTC
*
3761926 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
3761941 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
3761956 C
1 C
3761957 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:3764049 original size:20 final size:20
Alignment explanation
Indices: 3763970--3764049 Score: 79
Period size: 20 Copynumber: 3.8 Consensus size: 20
3763960 AATGTCCAAA
*
3763970 ATGTATCGATACATGTTTCT
1 ATGTATCGATACATTTTTCT
* *
3763990 GTGTATCGATACATCTGGAAATTCT
1 ATGTATCGATACAT-T----TTTCT
3764015 ATGTATCGATACATTTTTCT
1 ATGTATCGATACATTTTTCT
*
3764035 TTGTATCGATACATT
1 ATGTATCGATACATT
3764050 GTATCGATAC
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
20 31 0.63
24 1 0.02
25 17 0.35
ACGTcount: A:0.26, C:0.15, G:0.15, T:0.44
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCT
Found at i:3764053 original size:13 final size:13
Alignment explanation
Indices: 3764035--3764073 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
3764025 ACATTTTTCT
3764035 TTGTATCGATACA
1 TTGTATCGATACA
3764048 TTGTATCGATACA
1 TTGTATCGATACA
*
3764061 CTGTATCGATACA
1 TTGTATCGATACA
3764074 GGGTGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:3764218 original size:21 final size:21
Alignment explanation
Indices: 3764194--3764240 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
3764184 AAATCTTTTG
3764194 CAAAAT-ACTT-GTTTTTCACTT
1 CAAAATAACTTCGTTTTTCA--T
3764215 C-AAATAACTTCGTTTTTCAT
1 CAAAATAACTTCGTTTTTCAT
3764235 CAAAAT
1 CAAAAT
3764241 CAGCATTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
20 6 0.26
21 9 0.39
22 8 0.35
ACGTcount: A:0.34, C:0.19, G:0.04, T:0.43
Consensus pattern (21 bp):
CAAAATAACTTCGTTTTTCAT
Found at i:3764237 original size:20 final size:19
Alignment explanation
Indices: 3764196--3764238 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
3764186 ATCTTTTGCA
3764196 AAATACTTGTTTTTCACTTC
1 AAATACTTGTTTTTCAC-TC
3764216 AAATAACTTCGTTTTTCA-TC
1 AAAT-ACTT-GTTTTTCACTC
3764236 AAA
1 AAA
3764239 ATCAGCATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
20 9 0.43
21 4 0.19
22 8 0.38
ACGTcount: A:0.33, C:0.19, G:0.05, T:0.44
Consensus pattern (19 bp):
AAATACTTGTTTTTCACTC
Found at i:3766635 original size:13 final size:13
Alignment explanation
Indices: 3766617--3766642 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3766607 TACAGCAAGT
3766617 ATGTATCGATACA
1 ATGTATCGATACA
3766630 ATGTATCGATACA
1 ATGTATCGATACA
3766643 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3769818 original size:13 final size:13
Alignment explanation
Indices: 3769800--3769825 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3769790 ACAAAGATCC
3769800 ATGTATCGATACA
1 ATGTATCGATACA
3769813 ATGTATCGATACA
1 ATGTATCGATACA
3769826 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3769837 original size:33 final size:33
Alignment explanation
Indices: 3769779--3769845 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
3769769 AAAATTTCCA
*** *
3769779 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCAATAC
*
3769812 AATGTATCGATACACAGAAAAATGTATCAATAC
1 AATGTATCGATACAAAGAAAAATGTATCAATAC
3769845 A
1 A
3769846 TTTCCTTGGC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.45, C:0.16, G:0.13, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCAATAC
Found at i:3769905 original size:13 final size:13
Alignment explanation
Indices: 3769887--3769911 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3769877 ACAATACTTA
3769887 TGTATCGATACAT
1 TGTATCGATACAT
3769900 TGTATCGATACA
1 TGTATCGATACA
3769912 AATTGTTGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3770590 original size:9 final size:9
Alignment explanation
Indices: 3770576--3770609 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
3770566 TTCGAGTCAC
3770576 CATCATTAT
1 CATCATTAT
3770585 CATCATTAT
1 CATCATTAT
3770594 CATC-TTCAT
1 CATCATT-AT
3770603 CATCATT
1 CATCATT
3770610 GATGGTTGAC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 2 0.09
9 19 0.83
10 2 0.09
ACGTcount: A:0.29, C:0.26, G:0.00, T:0.44
Consensus pattern (9 bp):
CATCATTAT
Found at i:3776601 original size:11 final size:11
Alignment explanation
Indices: 3776572--3776612 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
3776562 TTGTTTCTAT
*
3776572 TTTTTTCTCTT
1 TTTTTTCTCTC
*
3776583 TTTCTTTCTCCC
1 TTT-TTTCTCTC
3776595 TTTTTTCTCTC
1 TTTTTTCTCTC
3776606 TTTTTTC
1 TTTTTTC
3776613 AGCTGAACCT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
11 17 0.65
12 9 0.35
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (11 bp):
TTTTTTCTCTC
Found at i:3777483 original size:167 final size:163
Alignment explanation
Indices: 3777262--3777671 Score: 502
Period size: 167 Copynumber: 2.5 Consensus size: 163
3777252 ATTCAAAACT
* * * *
3777262 CATGAAAATGAATTAATTTTTTAAAACTTAATTAATAAG-AATCAAATGATGATGTTTGATGAAT
1 CATGAAAATGAATGAATTTTTAAAAACTAAATTAATATGAAAT-AAATGATGATGTTTGATGAAT
* * * *
3777326 TTTGAAAATTGAAAACTGAGAAAAATCCCCTTAAAAAAATTTATAGAGTAGAAAACACCGTATTT
65 TTTGAAAATTGAAAAC-AAGAAAAATCCCCTCAAAAAAATTAACAGAGTAGAAAACACCGTATTT
3777391 TGAAAAAATAGG-AATTTAAAGGAAAAAA-ATAAAAAA
129 TG-AAAAA-AGGAAATTTAAAGGAAAAAATA-AAAAAA
* * *
3777427 CATAGGAAAATGAATGAATTTTTGAAAACTGAATTAATATGAAATAAATAATGATGTTTGATGAA
1 CAT--GAAAATGAATGAATTTTTAAAAACTAAATTAATATGAAATAAATGATGATGTTTGATGAA
* * * * * **
3777492 TTTTAAAAATTGAAAAACAAGAAAAATTCCCTCGACAAAATTAACGGAGTAGAAAACATTGTATT
64 TTTTGAAAATTG-AAAACAAGAAAAATCCCCTCAAAAAAATTAACAGAGTAGAAAACACCGTATT
*
3777557 TTGAAAAAAGGAAATTTCAAGGAAAAAATCAAAAAAA
128 TTGAAAAAAGGAAATTTAAAGGAAAAAAT-AAAAAAA
* * *
3777594 CATGAAAATGAATGAATTTTTAAAAACTAAATTAATATGAAATAAATGATAATATTTAATGAATT
1 CATGAAAATGAATGAATTTTTAAAAACTAAATTAATATGAAATAAATGATGATGTTTGATGAATT
* *
3777659 TTGATATTTGAAA
66 TTGAAAATTGAAA
3777672 CTTTGGAAAA
Statistics
Matches: 212, Mismatches: 26, Indels: 15
0.84 0.10 0.06
Matches are distributed among these distances:
164 3 0.01
165 69 0.33
166 20 0.09
167 111 0.52
168 9 0.04
ACGTcount: A:0.51, C:0.06, G:0.13, T:0.30
Consensus pattern (163 bp):
CATGAAAATGAATGAATTTTTAAAAACTAAATTAATATGAAATAAATGATGATGTTTGATGAATT
TTGAAAATTGAAAACAAGAAAAATCCCCTCAAAAAAATTAACAGAGTAGAAAACACCGTATTTTG
AAAAAAGGAAATTTAAAGGAAAAAATAAAAAAA
Found at i:3778316 original size:28 final size:28
Alignment explanation
Indices: 3778258--3778399 Score: 142
Period size: 28 Copynumber: 5.0 Consensus size: 28
3778248 CTCGGACATA
**
3778258 GGTGCCACCAACTTGTGTGAGCTTTGAAAG
1 GGTGCCACTGACTTGTG-G-GCTTTGAAAG
* *
3778288 GGTACCACTGACTTGT-GGCTTTGAAAA
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
* *
3778315 GGTGCCACTGATTTATGGGCTTTGAAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
* * * *
3778343 GATGTCACTGAATTGTGGGCTTTGAAAA
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
* * *
3778371 GGTGTCACTAACTTGTGGGCTTTGGAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
3778399 G
1 G
3778400 ATGCTACTAG
Statistics
Matches: 93, Mismatches: 18, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
27 22 0.24
28 58 0.62
30 13 0.14
ACGTcount: A:0.23, C:0.15, G:0.31, T:0.30
Consensus pattern (28 bp):
GGTGCCACTGACTTGTGGGCTTTGAAAG
Found at i:3778390 original size:56 final size:56
Alignment explanation
Indices: 3778257--3778899 Score: 512
Period size: 56 Copynumber: 11.5 Consensus size: 56
3778247 ACTCGGACAT
** * * *
3778257 AGGTGCCACCAACTTGTGTGAGCTTTGAAAGGGTACCACTGACTTGT-GGCTTTGAAA
1 AGGTGCCACTGACTTGTG-G-GCTTTGAAAGGATGCCACTGAATTGTGGGCTTTGAAA
* * *
3778314 AGGTGCCACTGATTTATGGGCTTTGAAAGGATGTCACTGAATTGTGGGCTTTGAAA
1 AGGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGAATTGTGGGCTTTGAAA
* * * * * * * ** *
3778370 AGGTGTCACTAACTTGTGGGCTTTGGAAGGATGCTACTAGAA-GGTTGCCACT-AAC
1 AGGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCACT-GAATTGTGGGCTTTGAAA
** ** * * * *
3778425 TTGTG-GGCT---TTGGAAGGATGCTACT-AGAAGGTTGCCACT-AACTTGTGGGCTTTG-GA
1 AGGTGCCACTGACTT-G-TGG--GCT-TTGA-AAGGATGCCACTGAA-TTGTGGGCTTTGAAA
* * * *
3778481 AGGTTGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGTTTTGAAA
1 AGG-TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGAATTGTGGGCTTTGAAA
* * ** * *
3778538 AGATGCCACGGACTTCAGGGCTCTGAAAGGATGCCA-T-AACTTGTGGGATTTGAAA
1 AGGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGAA-TTGTGGGCTTTGAAA
* * * * *
3778593 AGATGCCACTAACTTGCGGGCTTTGAAAGGATACCACT-AACTTATGGGCTTTGAAA
1 AGGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGAA-TTGTGGGCTTTGAAA
* * * *
3778649 AGATGCCACTAACTTGTGGGCTTTGAGAGAATGCCACT-AACTTGTGGGCTTTGAAA
1 AGGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGAA-TTGTGGGCTTTGAAA
* * * *
3778705 AGGTGCCACTGACTTGTGGGCTTTGAAA-AAGTGCCACTCACTTATGGGCTTTGAAA
1 AGGTGCCACTGACTTGTGGGCTTTGAAAGGA-TGCCACTGAATTGTGGGCTTTGAAA
* * *
3778761 AAGTGCCACTGACTTGTGGGCTTTGAAA-GATGCCACTGACTTGTAGGCTTTG-AA
1 AGGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGAATTGTGGGCTTTGAAA
3778815 AGAGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACA-TGTGGGCTTTGAAA
1 AG-GTGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGA-ATTGTGGGCTTTGAAA
* * *
3778872 AGATGCCACTGACATGCGGGCTTTGAAA
1 AGGTGCCACTGACTTGTGGGCTTTGAAA
3778900 AAGGGTCGTA
Statistics
Matches: 474, Mismatches: 85, Indels: 55
0.77 0.14 0.09
Matches are distributed among these distances:
51 2 0.00
52 1 0.00
53 2 0.00
54 8 0.02
55 122 0.26
56 300 0.63
57 32 0.07
58 2 0.00
59 2 0.00
60 1 0.00
61 2 0.00
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.28
Consensus pattern (56 bp):
AGGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGAATTGTGGGCTTTGAAA
Found at i:3778427 original size:42 final size:42
Alignment explanation
Indices: 3778376--3778492 Score: 216
Period size: 42 Copynumber: 2.8 Consensus size: 42
3778366 GAAAAGGTGT
3778376 CACTAACTTGTGGGCTTTGGAAGGATGCTACTAGAAGGTTGC
1 CACTAACTTGTGGGCTTTGGAAGGATGCTACTAGAAGGTTGC
3778418 CACTAACTTGTGGGCTTTGGAAGGATGCTACTAGAAGGTTGC
1 CACTAACTTGTGGGCTTTGGAAGGATGCTACTAGAAGGTTGC
* *
3778460 CACTAACTTGTGGGCTTTGGAAGGTTGCCACTA
1 CACTAACTTGTGGGCTTTGGAAGGATGCTACTA
3778493 ACTTGTGGGC
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 73 1.00
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.29
Consensus pattern (42 bp):
CACTAACTTGTGGGCTTTGGAAGGATGCTACTAGAAGGTTGC
Found at i:3778660 original size:195 final size:195
Alignment explanation
Indices: 3778457--3778900 Score: 576
Period size: 195 Copynumber: 2.3 Consensus size: 195
3778447 ACTAGAAGGT
* *
3778457 TGCCACTAACTTGTGGGCTTTGGAAGGTTGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGA
1 TGCCACTAACTTGTGGGCTTTGGAAGGATGCCACTAACTTGTGGGCTTTGAAAAGGTGCCACTGA
* * *
3778522 CTTGTGGGTTTTG-AAAAGATGCCACGGACTTCA-GGGCTCTG-AAAGGATGCCA-TAACTTGTG
66 CTTGTGGGCTTTGAAAAAG-TGCCACGCACTT-ATGGGCTCTGAAAAAG-TGCCACTAACTTGTG
*
3778583 GGATTTGAAAAGATGCCACTAACTTGCGGGCTTTGAAAG-GATACCACTAACTTATGGGCTTTGA
128 GGATTTG-AAAGATGCCACTAACTTGCAGGCTTTGAAAGAG-TACCACTAACTTATGGGCTTTGA
3778647 AAAGA
191 AAAGA
*
3778652 TGCCACTAACTTGTGGGCTTT-GAGAGAATGCCACTAACTTGTGGGCTTTGAAAAGGTGCCACTG
1 TGCCACTAACTTGTGGGCTTTGGA-AGGATGCCACTAACTTGTGGGCTTTGAAAAGGTGCCACTG
* * *
3778716 ACTTGTGGGCTTTGAAAAAGTGCCACTCACTTATGGGCTTTGAAAAAGTGCCACTGACTTGTGGG
65 ACTTGTGGGCTTTGAAAAAGTGCCACGCACTTATGGGCTCTGAAAAAGTGCCACTAACTTGTGGG
* * * * * * *
3778781 CTTTGAAAGATGCCACTGACTTGTAGGCTTTGAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGG
130 ATTTGAAAGATGCCACTAACTTGCAGGCTTTGAAAGAGTACCACTAACTTATGGGCTTTGAAAAG
3778846 A
195 A
* * * * * * *
3778847 TGCCACTGACATGTGGGCTTTGAAAAGATGCCACTGACATGCGGGCTTTGAAAA
1 TGCCACTAACTTGTGGGCTTTGGAAGGATGCCACTAACTTGTGGGCTTTGAAAA
3778901 AGGGTCGTAT
Statistics
Matches: 217, Mismatches: 25, Indels: 14
0.85 0.10 0.05
Matches are distributed among these distances:
194 3 0.01
195 189 0.87
196 25 0.12
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (195 bp):
TGCCACTAACTTGTGGGCTTTGGAAGGATGCCACTAACTTGTGGGCTTTGAAAAGGTGCCACTGA
CTTGTGGGCTTTGAAAAAGTGCCACGCACTTATGGGCTCTGAAAAAGTGCCACTAACTTGTGGGA
TTTGAAAGATGCCACTAACTTGCAGGCTTTGAAAGAGTACCACTAACTTATGGGCTTTGAAAAGA
Found at i:3778900 original size:28 final size:28
Alignment explanation
Indices: 3778457--3778900 Score: 522
Period size: 28 Copynumber: 15.9 Consensus size: 28
3778447 ACTAGAAGGT
* * * *
3778457 TGCCACTAACTTGTGGGCTTTGGAAGGT
1 TGCCACTGACTTGTGGGCTTTGAAAAGA
* * *
3778485 TGCCACTAACTTGTGGGCTTTGAAAGGG
1 TGCCACTGACTTGTGGGCTTTGAAAAGA
*
3778513 TGCCACTGACTTGTGGGTTTTGAAAAGA
1 TGCCACTGACTTGTGGGCTTTGAAAAGA
* ** * *
3778541 TGCCACGGACTTCAGGGCTCTGAAAGGA
1 TGCCACTGACTTGTGGGCTTTGAAAAGA
* *
3778569 TGCCA-TAACTTGTGGGATTTGAAAAGA
1 TGCCACTGACTTGTGGGCTTTGAAAAGA
* * *
3778596 TGCCACTAACTTGCGGGCTTTGAAAGGA
1 TGCCACTGACTTGTGGGCTTTGAAAAGA
* * *
3778624 TACCACTAACTTATGGGCTTTGAAAAGA
1 TGCCACTGACTTGTGGGCTTTGAAAAGA
* *
3778652 TGCCACTAACTTGTGGGCTTTG-AGAGAA
1 TGCCACTGACTTGTGGGCTTTGAAAAG-A
* *
3778680 TGCCACTAACTTGTGGGCTTTGAAAAGG
1 TGCCACTGACTTGTGGGCTTTGAAAAGA
3778708 TGCCACTGACTTGTGGGCTTTGAAAA-A
1 TGCCACTGACTTGTGGGCTTTGAAAAGA
* *
3778735 GTGCCACTCACTTATGGGCTTTGAAAA-A
1 -TGCCACTGACTTGTGGGCTTTGAAAAGA
3778763 GTGCCACTGACTTGTGGGCTTTG-AAAGA
1 -TGCCACTGACTTGTGGGCTTTGAAAAGA
*
3778791 TGCCACTGACTTGTAGGCTTTG-AAAGA
1 TGCCACTGACTTGTGGGCTTTGAAAAGA
*
3778818 GTGCCACTGACTTGTGGGCTTTGAAAGGA
1 -TGCCACTGACTTGTGGGCTTTGAAAAGA
*
3778847 TGCCACTGACATGTGGGCTTTGAAAAGA
1 TGCCACTGACTTGTGGGCTTTGAAAAGA
* *
3778875 TGCCACTGACATGCGGGCTTTGAAAA
1 TGCCACTGACTTGTGGGCTTTGAAAA
3778901 AGGGTCGTAT
Statistics
Matches: 366, Mismatches: 43, Indels: 14
0.87 0.10 0.03
Matches are distributed among these distances:
27 52 0.14
28 307 0.84
29 7 0.02
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (28 bp):
TGCCACTGACTTGTGGGCTTTGAAAAGA
Found at i:3785906 original size:15 final size:15
Alignment explanation
Indices: 3785867--3785911 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
3785857 GTGTATCGAC
*
3785867 GATTTTGTGGTGGGT
1 GATTTTGTGGTGGAT
* **
3785882 AATTAGGTGGTGGAT
1 GATTTTGTGGTGGAT
3785897 GATTTTGTGGTGGAT
1 GATTTTGTGGTGGAT
3785912 TTGGCGGAAT
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.16, C:0.00, G:0.42, T:0.42
Consensus pattern (15 bp):
GATTTTGTGGTGGAT
Found at i:3791235 original size:14 final size:14
Alignment explanation
Indices: 3791216--3791252 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
3791206 ATAATGTTAT
3791216 ATAAAATAATTCAC
1 ATAAAATAATTCAC
3791230 ATAAAATAATTCAC
1 ATAAAATAATTCAC
*
3791244 ACAAAATAA
1 ATAAAATAA
3791253 CAATAAAGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.62, C:0.14, G:0.00, T:0.24
Consensus pattern (14 bp):
ATAAAATAATTCAC
Found at i:3792111 original size:20 final size:21
Alignment explanation
Indices: 3792086--3792135 Score: 77
Period size: 20 Copynumber: 2.5 Consensus size: 21
3792076 CAAGCAATGC
*
3792086 ATCGATACAATT-TATCATGT
1 ATCGATACAATTGTACCATGT
3792106 ATCGATAC-ATTGTACCATGT
1 ATCGATACAATTGTACCATGT
3792126 ATCGATACAA
1 ATCGATACAA
3792136 ACAGTGGTAG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 3 0.11
20 23 0.85
21 1 0.04
ACGTcount: A:0.36, C:0.18, G:0.12, T:0.34
Consensus pattern (21 bp):
ATCGATACAATTGTACCATGT
Found at i:3792189 original size:20 final size:20
Alignment explanation
Indices: 3792164--3792218 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 20
3792154 TTGCCAATCT
**
3792164 CATGTATCGATACAATTGTC
1 CATGTATCGATACAATTGAA
*
3792184 CATGTATCGATATAA-TGAA
1 CATGTATCGATACAATTGAA
*
3792203 CATATATCGATACAAT
1 CATGTATCGATACAAT
3792219 GTATCGATAC
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
19 15 0.52
20 14 0.48
ACGTcount: A:0.38, C:0.16, G:0.13, T:0.33
Consensus pattern (20 bp):
CATGTATCGATACAATTGAA
Found at i:3792797 original size:22 final size:22
Alignment explanation
Indices: 3792772--3792847 Score: 107
Period size: 22 Copynumber: 3.5 Consensus size: 22
3792762 AGTTTTCGTT
*
3792772 TTTCTCCCCCTTAATTAAAGAA
1 TTTCTCCCCCTTAATCAAAGAA
* *
3792794 TTTCTCCCCTTTAATCAAAAAA
1 TTTCTCCCCCTTAATCAAAGAA
* *
3792816 ATTCTCCCCCTTAATCAAAGCA
1 TTTCTCCCCCTTAATCAAAGAA
3792838 TTTCTCCCCC
1 TTTCTCCCCC
3792848 ATTGTCAAAT
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 46 1.00
ACGTcount: A:0.29, C:0.34, G:0.03, T:0.34
Consensus pattern (22 bp):
TTTCTCCCCCTTAATCAAAGAA
Found at i:3795354 original size:409 final size:409
Alignment explanation
Indices: 3794595--3795412 Score: 1564
Period size: 409 Copynumber: 2.0 Consensus size: 409
3794585 AAGAATTTTA
3794595 AAGAAGGATTGTTAGGGTTTGAGAGGATTTTAGGTGTTTAGGGGTTTGGGTATCGATACAAAATG
1 AAGAAGGATTGTTAGGGTTTGAGAGGATTTTAGGTGTTTAGGGGTTTGGGTATCGATACAAAATG
3794660 AAGAAGGAAGGTTCGACTTGTCAAATAGTACCCTATGTATCGATACATTCTGGAAAATTTCCAGA
66 AAGAAGGAAGGTTCGACTTGTCAAATAGTACCCTATGTATCGATACATTCTGGAAAATTTCCAGA
3794725 GTAATGTCAAAAATTAGTAGCGAAACTATCCTATAGACCCTAATTCATATCGAACAAGCATAATT
131 GTAATGTCAAAAATTAGTAGCGAAACTATCCTATAGACCCTAATTCATATCGAACAAGCATAATT
3794790 CATTCACAAAATATAATATACACCAAATTCATCCAAAATCAAGACAAAATAATCAAAAAACACTT
196 CATTCACAAAATATAATATACACCAAATTCATCCAAAATCAAGACAAAATAATCAAAAAACACTT
3794855 TATCACAAAGATTAACCAAATAAAACATCAAAAAATGCAACATTCATTTCAAATGACCAAAAATG
261 TATCACAAAGATTAACCAAATAAAACATCAAAAAATGCAACATTCATTTCAAATGACCAAAAATG
3794920 TCATTTTTGTGCAAACAAGGTCATTAAACAAGGTTTTTCATAAAAGCATGATAAAGACAACAGAG
326 TCATTTTTGTGCAAACAAGGTCATTAAACAAGGTTTTTCATAAAAGCATGATAAAGACAACAGAG
3794985 TATACAAGTATAAGAAATG
391 TATACAAGTATAAGAAATG
*
3795004 AAGAAGGATTGTTAGGGTTTTAGAGGATTTTAGGTGTTTAGGGGTTTGGGTATCGATACAAAATG
1 AAGAAGGATTGTTAGGGTTTGAGAGGATTTTAGGTGTTTAGGGGTTTGGGTATCGATACAAAATG
3795069 AAGAAGGAAGGTTCGACTTGTCAAATAGTACCCTATGTATCGATACATTCTGGAAAATTTCCAGA
66 AAGAAGGAAGGTTCGACTTGTCAAATAGTACCCTATGTATCGATACATTCTGGAAAATTTCCAGA
3795134 GTAATGTCAAAAATTAGTAGCGAAACTATCCTATAGACCCTAATTCATATCGAACAAGCATAATT
131 GTAATGTCAAAAATTAGTAGCGAAACTATCCTATAGACCCTAATTCATATCGAACAAGCATAATT
* **
3795199 CATTCACACAATATAATATACACCAAATTCATCCAAAATCAAGGTAAAATAATCAAAAAACACTT
196 CATTCACAAAATATAATATACACCAAATTCATCCAAAATCAAGACAAAATAATCAAAAAACACTT
* *
3795264 TATCACATAGATTAACCAAATAAAACATCAAAAAGTGCAACATTCATTTCAAATGACCAAAAATG
261 TATCACAAAGATTAACCAAATAAAACATCAAAAAATGCAACATTCATTTCAAATGACCAAAAATG
*
3795329 TCATTTTTGTGCAAACAAGGTCATTAAACAAGGTTTTTCATAAAAGCATGATAAAGACAGCAGAG
326 TCATTTTTGTGCAAACAAGGTCATTAAACAAGGTTTTTCATAAAAGCATGATAAAGACAACAGAG
*
3795394 TATACAAGTATGAGAAATG
391 TATACAAGTATAAGAAATG
3795413 TTTAAGACAT
Statistics
Matches: 401, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
409 401 1.00
ACGTcount: A:0.42, C:0.15, G:0.16, T:0.27
Consensus pattern (409 bp):
AAGAAGGATTGTTAGGGTTTGAGAGGATTTTAGGTGTTTAGGGGTTTGGGTATCGATACAAAATG
AAGAAGGAAGGTTCGACTTGTCAAATAGTACCCTATGTATCGATACATTCTGGAAAATTTCCAGA
GTAATGTCAAAAATTAGTAGCGAAACTATCCTATAGACCCTAATTCATATCGAACAAGCATAATT
CATTCACAAAATATAATATACACCAAATTCATCCAAAATCAAGACAAAATAATCAAAAAACACTT
TATCACAAAGATTAACCAAATAAAACATCAAAAAATGCAACATTCATTTCAAATGACCAAAAATG
TCATTTTTGTGCAAACAAGGTCATTAAACAAGGTTTTTCATAAAAGCATGATAAAGACAACAGAG
TATACAAGTATAAGAAATG
Found at i:3800085 original size:13 final size:13
Alignment explanation
Indices: 3800067--3800091 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3800057 ACAAAAATGT
3800067 TGTATCGATACAA
1 TGTATCGATACAA
3800080 TGTATCGATACA
1 TGTATCGATACA
3800092 CAAGTGTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3800086 original size:32 final size:32
Alignment explanation
Indices: 3800048--3800118 Score: 106
Period size: 32 Copynumber: 2.2 Consensus size: 32
3800038 TTCAACGATT
3800048 TGTATCGATACAAAAATGTTGTATCGATACAA
1 TGTATCGATACAAAAATGTTGTATCGATACAA
* * * *
3800080 TGTATCGATACACAAGTGTTGTATTGATACTA
1 TGTATCGATACAAAAATGTTGTATCGATACAA
3800112 TGTATCG
1 TGTATCG
3800119 CTACGAAGCT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.34, C:0.13, G:0.18, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAAATGTTGTATCGATACAA
Found at i:3800181 original size:13 final size:13
Alignment explanation
Indices: 3800163--3800187 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3800153 ATTACTCAAA
3800163 TGTATCGATACAT
1 TGTATCGATACAT
3800176 TGTATCGATACA
1 TGTATCGATACA
3800188 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3800262 original size:48 final size:50
Alignment explanation
Indices: 3800197--3800320 Score: 180
Period size: 48 Copynumber: 2.5 Consensus size: 50
3800187 ACTGATCTTT
3800197 GTATCGATACATGCAGGCAAATTTGCC-AGATGTATCAATACACTAT-AC
1 GTATCGATACATGCAGGCAAATTTGCCAAGATGTATCAATACACTATAAC
* * *
3800245 GTATCGATACATACAGGCAAATTTGCCAAGATGTATCGATACACTATGAAAT
1 GTATCGATACATGCAGGCAAATTTGCCAAGATGTATCAATACACTAT--AAC
*
3800297 GTATCGATAGATGCAGGCAAATTT
1 GTATCGATACATGCAGGCAAATTT
3800321 TCATATTTCG
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
48 26 0.39
49 18 0.27
52 23 0.34
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (50 bp):
GTATCGATACATGCAGGCAAATTTGCCAAGATGTATCAATACACTATAAC
Found at i:3806599 original size:20 final size:20
Alignment explanation
Indices: 3806574--3806667 Score: 138
Period size: 19 Copynumber: 4.8 Consensus size: 20
3806564 CTGCCAATTT
**
3806574 CATGTATCGATACAATTGTC
1 CATGTATCGATACAATTGAA
3806594 CATGTATCGATACAA-TGAA
1 CATGTATCGATACAATTGAA
**
3806613 CATGTATCGATACAATTGTC
1 CATGTATCGATACAATTGAA
3806633 CATGTATCGATACAA-TGAA
1 CATGTATCGATACAATTGAA
3806652 CATGTATCGATACAAT
1 CATGTATCGATACAAT
3806668 GTATCGATAC
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
19 34 0.52
20 32 0.48
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.31
Consensus pattern (20 bp):
CATGTATCGATACAATTGAA
Found at i:3806627 original size:39 final size:39
Alignment explanation
Indices: 3806574--3806667 Score: 188
Period size: 39 Copynumber: 2.4 Consensus size: 39
3806564 CTGCCAATTT
3806574 CATGTATCGATACAATTGTCCATGTATCGATACAATGAA
1 CATGTATCGATACAATTGTCCATGTATCGATACAATGAA
3806613 CATGTATCGATACAATTGTCCATGTATCGATACAATGAA
1 CATGTATCGATACAATTGTCCATGTATCGATACAATGAA
3806652 CATGTATCGATACAAT
1 CATGTATCGATACAAT
3806668 GTATCGATAC
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 55 1.00
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.31
Consensus pattern (39 bp):
CATGTATCGATACAATTGTCCATGTATCGATACAATGAA
Found at i:3806671 original size:13 final size:13
Alignment explanation
Indices: 3806653--3806678 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3806643 TACAATGAAC
3806653 ATGTATCGATACA
1 ATGTATCGATACA
3806666 ATGTATCGATACA
1 ATGTATCGATACA
3806679 TTCAAGGGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3809244 original size:13 final size:13
Alignment explanation
Indices: 3809226--3809266 Score: 73
Period size: 13 Copynumber: 3.2 Consensus size: 13
3809216 ACAATATTCC
3809226 TTGTATCGATACA
1 TTGTATCGATACA
*
3809239 TTGTATCGATATA
1 TTGTATCGATACA
3809252 TTGTATCGATACA
1 TTGTATCGATACA
3809265 TT
1 TT
3809267 AGGTACTATC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.29, C:0.12, G:0.15, T:0.44
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:3810096 original size:33 final size:32
Alignment explanation
Indices: 3810043--3810106 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 32
3810033 ACAAGTTATC
*
3810043 TATCGATACATTTCTTCATGTATTGATACAATG
1 TATCGATACATTTC-TCATGTATCGATACAATG
3810076 TATCGATACATTGTAC-CATGTATCGATACAA
1 TATCGATACATT-T-CTCATGTATCGATACAA
3810107 ATAGTGATAG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
33 26 0.93
34 1 0.04
35 1 0.04
ACGTcount: A:0.33, C:0.17, G:0.12, T:0.38
Consensus pattern (32 bp):
TATCGATACATTTCTCATGTATCGATACAATG
Found at i:3810173 original size:13 final size:13
Alignment explanation
Indices: 3810155--3810181 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
3810145 TACAATGAAC
3810155 ATGTATCGATACA
1 ATGTATCGATACA
3810168 ATGTATCGATACA
1 ATGTATCGATACA
3810181 A
1 A
3810182 AGCAGCATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3810200 original size:33 final size:32
Alignment explanation
Indices: 3810136--3810200 Score: 85
Period size: 32 Copynumber: 2.0 Consensus size: 32
3810126 TGCCAATTTC
* *
3810136 ATGTATCAATACAATGAACATGTATCGATACA
1 ATGTATCAATACAAAGAACATATATCGATACA
* *
3810168 ATGTATCGATACAAAGCAGCATATATCGATACA
1 ATGTATCAATACAAAG-AACATATATCGATACA
3810201 TCTAGGTATG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
32 14 0.50
33 14 0.50
ACGTcount: A:0.43, C:0.17, G:0.14, T:0.26
Consensus pattern (32 bp):
ATGTATCAATACAAAGAACATATATCGATACA
Found at i:3813394 original size:19 final size:20
Alignment explanation
Indices: 3813350--3813403 Score: 83
Period size: 19 Copynumber: 2.8 Consensus size: 20
3813340 TTGCTAATCT
**
3813350 CATGTATCGATACAATTGTC
1 CATGTATCGATACAATTGAA
3813370 CATGTATCGATACAA-TGAA
1 CATGTATCGATACAATTGAA
3813389 CATGTATCGATACAA
1 CATGTATCGATACAA
3813404 CGTATCGATA
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 17 0.53
20 15 0.47
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.30
Consensus pattern (20 bp):
CATGTATCGATACAATTGAA
Found at i:3813410 original size:13 final size:13
Alignment explanation
Indices: 3813392--3813416 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3813382 CAATGAACAT
3813392 GTATCGATACAAC
1 GTATCGATACAAC
3813405 GTATCGATACAA
1 GTATCGATACAA
3813417 AGCATAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.20, G:0.16, T:0.24
Consensus pattern (13 bp):
GTATCGATACAAC
Found at i:3813432 original size:33 final size:32
Alignment explanation
Indices: 3813373--3813435 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 32
3813363 AATTGTCCAT
*
3813373 GTATCGATACAATGAACATGTATCGATACAAC
1 GTATCGATACAAAGAACATGTATCGATACAAC
3813405 GTATCGATACAAAGCATA-ATGTATCGATACA
1 GTATCGATACAAAG-A-ACATGTATCGATACA
3813436 TTCAAGGGTT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 13 0.46
33 14 0.50
34 1 0.04
ACGTcount: A:0.41, C:0.17, G:0.16, T:0.25
Consensus pattern (32 bp):
GTATCGATACAAAGAACATGTATCGATACAAC
Found at i:3815650 original size:13 final size:12
Alignment explanation
Indices: 3815628--3815671 Score: 54
Period size: 13 Copynumber: 3.6 Consensus size: 12
3815618 TTTGTTTCTA
3815628 TTTTTTTCTCTC
1 TTTTTTTCTCTC
3815640 TTTTCTTTCTC-C
1 TTTT-TTTCTCTC
*
3815652 CTTTTTTCTCTC
1 TTTTTTTCTCTC
3815664 ATTTTTTT
1 -TTTTTTT
3815672 AGCTGAACCT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
11 6 0.22
12 9 0.33
13 12 0.44
ACGTcount: A:0.02, C:0.25, G:0.00, T:0.73
Consensus pattern (12 bp):
TTTTTTTCTCTC
Found at i:3815659 original size:11 final size:12
Alignment explanation
Indices: 3815629--3815670 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
3815619 TTGTTTCTAT
*
3815629 TTTTTTCTCTCT
1 TTTTTTCTCTCC
3815641 TTTCTTTCTC-CC
1 TTT-TTTCTCTCC
*
3815653 TTTTTTCTCTCA
1 TTTTTTCTCTCC
3815665 TTTTTT
1 TTTTTT
3815671 TAGCTGAACC
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
11 6 0.23
12 14 0.54
13 6 0.23
ACGTcount: A:0.02, C:0.26, G:0.00, T:0.71
Consensus pattern (12 bp):
TTTTTTCTCTCC
Found at i:3816638 original size:13 final size:12
Alignment explanation
Indices: 3816617--3816659 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 12
3816607 TTTGTTTCTA
3816617 TTTTTTTCTCTT
1 TTTTTTTCTCTT
3816629 TTTCTTTTCTCCTT
1 TTT-TTTTCT-CTT
*
3816643 TTTTTCTCTCATT
1 TTTTTTTCTC-TT
3816656 TTTT
1 TTTT
3816660 AGCTGAACCT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
12 4 0.15
13 17 0.63
14 6 0.22
ACGTcount: A:0.02, C:0.21, G:0.00, T:0.77
Consensus pattern (12 bp):
TTTTTTTCTCTT
Found at i:3817135 original size:21 final size:19
Alignment explanation
Indices: 3817111--3817155 Score: 54
Period size: 21 Copynumber: 2.3 Consensus size: 19
3817101 TTGTTGTAGA
3817111 AAAATCAATATAAAAAAATTT
1 AAAATCAATA-AAAAAAA-TT
* *
3817132 AAAATTAATAAAATAAATT
1 AAAATCAATAAAAAAAATT
3817151 AAAAT
1 AAAAT
3817156 TTTCAAAAGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 7 0.32
20 6 0.27
21 9 0.41
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (19 bp):
AAAATCAATAAAAAAAATT
Found at i:3817144 original size:19 final size:19
Alignment explanation
Indices: 3817120--3817156 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
3817110 AAAAATCAAT
3817120 ATAAAA-AAATTTAAAATTA
1 ATAAAATAAA-TTAAAATTA
3817139 ATAAAATAAATTAAAATT
1 ATAAAATAAATTAAAATT
3817157 TTCAAAAGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 14 0.82
20 3 0.18
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (19 bp):
ATAAAATAAATTAAAATTA
Found at i:3818446 original size:19 final size:19
Alignment explanation
Indices: 3818420--3818458 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
3818410 CACTGTATTT
*
3818420 AAAAAAAAAATTGA-GAAA
1 AAAAAAAAAACTGATGAAA
3818438 AAAATAAAAAACTGATGAAA
1 AAAA-AAAAAACTGATGAAA
3818458 A
1 A
3818459 TGAATGAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 4 0.22
19 9 0.50
20 5 0.28
ACGTcount: A:0.74, C:0.03, G:0.10, T:0.13
Consensus pattern (19 bp):
AAAAAAAAAACTGATGAAA
Found at i:3819109 original size:21 final size:20
Alignment explanation
Indices: 3819085--3819124 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
3819075 TTGTTGTAGA
3819085 AAAATCAATATAAAAAAATTT
1 AAAATCAATA-AAAAAAATTT
* *
3819106 AAAATTAATAAAATAAATT
1 AAAATCAATAAAAAAAATT
3819125 AAATTTTTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (20 bp):
AAAATCAATAAAAAAAATTT
Found at i:3820530 original size:988 final size:990
Alignment explanation
Indices: 3815577--3821513 Score: 9311
Period size: 988 Copynumber: 6.0 Consensus size: 990
3815567 ATACCTTGAG
* *
3815577 AAATCTTGTGAAAATAAAAGCTAGCTTTA-TTTTTTCTA-CTATTTGTTTCTATTTTTTTCTCTC
1 AAATCTTGTGAAAACAAAAGCTAGCTTTATTTTTTTCTACCTATTTGTTTCTATTTTTTTCTTTC
3815640 TTT-TCTTTCTCCCTTTTTTCTCTCATTTTTTTAGCTGAACCTTCCTATTTGCTGCCAGCCCATG
66 TTTCT-TTTCTCCCTTTTTTCTCTCATTTTTTTAGCTGAACCTTCCTATTTGCTGCCAGCCCATG
3815704 GTGAAGGTGAATGACATCCATTTATAGAGGTCATTCATGGCAAAGAGATGGTGGGAAGCAACATG
130 GTGAAGGTGAATGACATCCATTTATAGAGGTCATTCATGGCAAAGAGATGGTGGGAAGCAACATG
* * *
3815769 GCCAAAATGGCCACCAAATTTCCATTTTTTCATA-ATATTATTTATTTTATGCCATCAAAAGTTG
195 GCCAAAATGGCCACCAAATTT-CATTTTTTCATACTTTTTATTTATTTTATGCTATCAAAAGTTG
* * *
3815833 TGAGTATTAAATTAGTGGTCACTCTCAACAAAAGTATAATGATTATTTATGATAATGTCTAGCAA
259 TAAGCATTAAATTAGTGGTCACTCTCAACAAAAGTATGATGATTATTTATGATAATGTCTAGCAA
* * * * * * *
3815898 TGAAACATTATGCTCCCACTAATTTTGGTTGGAAAGAAATTGGATGTCAACCTAGACTAGTTGCT
324 TGAATCATTATG-TCTCACTAATTTTGGTTGGGAAGAAATTGGATGCCAACATAGACTAGTTACC
* *
3815963 AATAAACTAGTCAAAACAAATAAATAAAAAAATAAATT-TCAAAAATTTC--AAAAA-AAAATTA
388 AATAAACTAGTCAAAACAAACAAA-AAAAAAA-AAATTCT-AAAAATTCCAAAAAAATAAAATTA
3816024 ATATTTGTCACAAAAAGATTTTAGAAATGGAATAAT-AAAAATGATCTTGATTGCAAATTAAAAA
450 ATATTTGTCACAAAAAGATTTTAGAAATGGAATAATGAAAAA-GATCTTGATTGCAAATTAAAAA
* * * * *
3816088 CTCATAAATTTTTACGAGAAATGTCTTGATGTAGAAAAATCAATATATATAAAAAAATTAAAATT
514 CTCGTAAATTTTTACGAGAAATGCCTTGATGTAGAAAAATTAATATATACAAAAAATTTAAAATT
* * *
3816153 AATGAAATAAATTAAATTTTTCAAAAATGAATAAATGGGAGTTCAATGACATCATTAGATGAATT
579 AATGAAATAAATTAAAATTTTCAAAAATAAATTAATGGGAGTTCAATGACATCATTAGATGAATT
* *
3816218 CTAAAA-TTTTAAACTAAAAACAAATCCCTCCTAAAAAATTTATGGAGAAGAAAACTCAATTTTT
644 CTAAAATTTTTAAACTAAAAAAAAATCCCTCCTAAAAAATTTATGGAGAAGAAAACTCGATTTTT
* *
3816282 CAAAAAAAAAGAGATTTTCAAAGATAAATTCAAAACCCATGAAAATAAATTAATTTTTTTAAACT
709 CAAAAAAAAAGAGATTTTCAAAGATAAATTCAAAACTCATGAAAATGAATTAATTTTTTTAAACT
* *** *
3816347 GAATTAATATGAATCAAATGATGATGTTTGATAAATATTAAAAGCCAAAAACTGAGAAAAATCCT
774 GAATTAATATGAATCAAATGATGATGTTTGATGAATATTAAAAGTTGAAAACTGAGAAAAATCCC
* *
3816412 TTTGAAAAAATTTACAGAATAGAAAACACCGTATTTAAAAAAAAATT-GAGAAAAAAATAAAAAA
839 TTTGAAAAAATTTACAGAGTAGAAAACACCGTATTT-AAAAAAAATTCAAGAAAAAAATAAAAAA
* * * *
3816476 CTGATGAAAATGAATGAATTTTTGAAAACTGAATTAATATAAAATAAATAATGATATTTGATGAA
903 CTCATGAAAATGAACGAATTTTTGAAAACTGAATTAATATGAAATAAATAATGATGTTTGATGAA
3816541 TTTTAAAAATTAAAAACTAAGAA
968 TTTTAAAAATTAAAAACTAAGAA
*
3816564 AAATCTTGTGAAAACAAAAGCTAGTTTTATTTTTTTCTACCTATTTGTTTCTATTTTTTTCTCTT
1 AAATCTTGTGAAAACAAAAGCTAGCTTTATTTTTTTCTACCTATTTGTTTCTATTTTTTTCT-TT
* *
3816629 -TTTCTTTTCTCCTTTTTTTCTCTCA-TTTTTTAGCTGAACCTTCTTATTTGCTGCCAGCCCATG
65 CTTTCTTTTCTCCCTTTTTTCTCTCATTTTTTTAGCTGAACCTTCCTATTTGCTGCCAGCCCATG
* *
3816692 GTGAAAGTGAATGACATCCATTTATAGAGGTCATTCATGGCAAAGAGTTGGTGGGAAGCAACATG
130 GTGAAGGTGAATGACATCCATTTATAGAGGTCATTCATGGCAAAGAGATGGTGGGAAGCAACATG
* *
3816757 GCC-AAATGGGCCACCAAATTGCATTTTTTCATACTTTTTATTTATTTTATGCCATCAAAAGTTG
195 GCCAAAAT-GGCCACCAAATTTCATTTTTTCATACTTTTTATTTATTTTATGCTATCAAAAGTTG
* *
3816821 TGAGCATTAAATTAGTGGTCACTCTCAACAAAAGTATGATGATTTTTTATGATAATGTCTAGCAA
259 TAAGCATTAAATTAGTGGTCACTCTCAACAAAAGTATGATGATTATTTATGATAATGTCTAGCAA
* * *
3816886 TGAATCATTATGTCTCACTAATTTTGGTTGGGAAGAAATTGGATGCCAACTTAGACGAGTTGCCA
324 TGAATCATTATGTCTCACTAATTTTGGTTGGGAAGAAATTGGATGCCAACATAGACTAGTTACCA
* * * * * *
3816951 AAAAACTAGTCAAAATAAATAAATAAAAATAAATTCTGAAAATTCCAAAAAAATAAAATTAATAT
389 ATAAACTAGTCAAAACAAACAAAAAAAAAAAAATTCTAAAAATTCCAAAAAAATAAAATTAATAT
* * * *
3817016 TTGTCCCAAAAAGATTTTAGAAATAGAATAATGAAAAAGATCTTAATTGCAAATTAAAAACTTGT
454 TTGTCACAAAAAGATTTTAGAAATGGAATAATGAAAAAGATCTTGATTGCAAATTAAAAACTCGT
* * * *
3817081 AAATTTTTACGAGAAATACCTTGTTGTAGAAAAA-TCA-ATATA-AAAAAATTTAAAATTAATAA
519 AAATTTTTACGAGAAATGCCTTGATGTAGAAAAATTAATATATACAAAAAATTTAAAATTAATGA
*
3817143 AATAAATTAAAATTTTCAAAAGTAAATTAATGGGAGTTCAATGACATCATTAGATGAATTCTAAA
584 AATAAATTAAAATTTTCAAAAATAAATTAATGGGAGTTCAATGACATCATTAGATGAATTCTAAA
*
3817208 ATTTTTAAACTGAAAAAAAAAAATCCCTCCTAAAAAATTTATGAAGAA-AAAACTCGA-TTTTCA
649 ATTTTTAAACT---AAAAAAAAATCCCTCCTAAAAAATTTATGGAGAAGAAAACTCGATTTTTCA
* * *
3817271 GAAAAAAAGAGATTTTCAAAGATAATTTCAAAACTCATGAAAATGAATTAATTTTTTTAAATTGA
711 AAAAAAAAGAGATTTTCAAAGATAAATTCAAAACTCATGAAAATGAATTAATTTTTTTAAACTGA
*
3817336 ATTAATATGAATCAAATGATGATGTTTGATGAATATTAAAAGTTGAAAACTGTGAAAAATCCCTT
776 ATTAATATGAATCAAATGATGATGTTTGATGAATATTAAAAGTTGAAAACTGAGAAAAATCCCTT
* * *
3817401 TGAAAAAATTTACAAAGTAGAAAACGCTGTA-TT-AAAAAAATTCAAG-AAAAAATAAAAAACTC
841 TGAAAAAATTTACAGAGTAGAAAACACCGTATTTAAAAAAAATTCAAGAAAAAAATAAAAAACTC
* *
3817463 ATGAAAATGAACGAATTTTTGAAAATTGAATTAATATGAAATAAATAATGATGTTTAATGAATTT
906 ATGAAAATGAACGAATTTTTGAAAACTGAATTAATATGAAATAAATAATGATGTTTGATGAATTT
3817528 TAAAAATTAAAAACTAAGAA
971 TAAAAATTAAAAACTAAGAA
3817548 AAATCTTGTGAAAACAAAAGCTAGCTTTATTTTTTTCTACCTATTTGTTTCTATTTTTTTCTTTC
1 AAATCTTGTGAAAACAAAAGCTAGCTTTATTTTTTTCTACCTATTTGTTTCTATTTTTTTCTTTC
* ** * * *
3817613 TTTCTTTTCTCCTTTTTTTCAATCATTTTTTCAGTTGAACCTTCCTATTTGCTGCCAGCCTATGG
66 TTTCTTTTCTCCCTTTTTTCTCTCATTTTTTTAGCTGAACCTTCCTATTTGCTGCCAGCCCATGG
* *
3817678 TGAAGATGGATGACATCCATTTATAGAGGTCATTCATGGCAAAGAGATGGTGGGAAGCAACATGG
131 TGAAGGTGAATGACATCCATTTATAGAGGTCATTCATGGCAAAGAGATGGTGGGAAGCAACATGG
*
3817743 CCAAAATGGCCACCAAATTTCTTTTTTTTCATACTTTTTATTTATTTTATGCTATCAAAAGTTGT
196 CCAAAATGGCCACCAAATTTC-ATTTTTTCATACTTTTTATTTATTTTATGCTATCAAAAGTTGT
*
3817808 AAGCATTAAATTAGTGGTCACTCTCAACAAAAGTATGATGATTATTTATGATAATATCTAGCAAT
260 AAGCATTAAATTAGTGGTCACTCTCAACAAAAGTATGATGATTATTTATGATAATGTCTAGCAAT
* *
3817873 GAATCATTATGTCTCACTAATTTTGGTTGGGAAGAAATTGAATGCCAACATAAACTAGTTACCAA
325 GAATCATTATGTCTCACTAATTTTGGTTGGGAAGAAATTGGATGCCAACATAGACTAGTTACCAA
* *
3817938 TAAACTAATCAAAACAAAC-AAATAAAAAAAATTC-AAAAATTCCAAAAAAATAAAATTAATATT
390 TAAACTAGTCAAAACAAACAAAAAAAAAAAAATTCTAAAAATTCCAAAAAAATAAAATTAATATT
* *
3818001 TGTAACAAAAAGATTTTAGAAATGGAATAATGAAAACGATCTTGATTGCAAATTAAAAACTCGTA
455 TGTCACAAAAAGATTTTAGAAATGGAATAATGAAAAAGATCTTGATTGCAAATTAAAAACTCGTA
3818066 AATTTTTACGAGAAATGCCTTGATGTAGAAAAATTAATATATACAAAAAATTTAAAATTAATGAA
520 AATTTTTACGAGAAATGCCTTGATGTAGAAAAATTAATATATACAAAAAATTTAAAATTAATGAA
*
3818131 ATAAATTAAATTTTTCAAAAATAAATTAATGGGAGTTCAATGACATCATTAGATGAATTCTAAAA
585 ATAAATTAAAATTTTCAAAAATAAATTAATGGGAGTTCAATGACATCATTAGATGAATTCTAAAA
* *
3818196 TTTTTAAACTAAAAACAAATCCCTCCTAAAAAATTTATGGAGAAGAAAACTCAATTTTTCAAAAA
650 TTTTTAAACTAAAAAAAAATCCCTCCTAAAAAATTTATGGAGAAGAAAACTCGATTTTTCAAAAA
* * *
3818261 AAAAGAGATTTTCAAAGATAAATTCAAAACCCATGAAAATAAATTAATTTTTTTAAACTCAATTA
715 AAAAGAGATTTTCAAAGATAAATTCAAAACTCATGAAAATGAATTAATTTTTTTAAACTGAATTA
* * *
3818326 ATATGAATCAAATGATGATGTTTGATAAATATTAAAAGCTAAAAACTGAGAAAAATCCCTTTGAA
780 ATATGAATCAAATGATGATGTTTGATGAATATTAAAAGTTGAAAACTGAGAAAAATCCCTTTGAA
* * *
3818391 AAAATTTACAGA-TAGAAAACACTGTATTTAAAAAAAAAATT-GAGAAAAAAATAAAAAACTGAT
845 AAAATTTACAGAGTAGAAAACACCGTATTT--AAAAAAAATTCAAGAAAAAAATAAAAAACTCAT
* * *
3818454 GAAAATGAATGAATTTTTGAAAACTGAATTAATATAAAATAAATAATGATATTTGATGAATTTTA
908 GAAAATGAACGAATTTTTGAAAACTGAATTAATATGAAATAAATAATGATGTTTGATGAATTTTA
3818519 AAAATTAAAAACTAAGAA
973 AAAATTAAAAACTAAGAA
*
3818537 AAATCTTGTGAAAACAAAAGCTAGTTTTATTTTTTTCTACCTATTTGTTTCTATTTTTTTCTCTT
1 AAATCTTGTGAAAACAAAAGCTAGCTTTATTTTTTTCTACCTATTTGTTTCTATTTTTTTCT-TT
*
3818602 -TTTCTTTTCTCCCTTTTTTCTCTCATTTTTTTAGCTGAACCTTCTTATTTGCTGCCAGCCCATG
65 CTTTCTTTTCTCCCTTTTTTCTCTCATTTTTTTAGCTGAACCTTCCTATTTGCTGCCAGCCCATG
* *
3818666 GTGAAAGTGAATGACATCCATTTATAGAGGTCATTCATGGCAAAGAGTTGGTGGGAAGCAACATG
130 GTGAAGGTGAATGACATCCATTTATAGAGGTCATTCATGGCAAAGAGATGGTGGGAAGCAACATG
*
3818731 GCC-AAATGGGCCACCAAATTGCATTTTTTCATACTTTTTATTTATTTTATGCTATCAAAAGTTG
195 GCCAAAAT-GGCCACCAAATTTCATTTTTTCATACTTTTTATTTATTTTATGCTATCAAAAGTTG
* *
3818795 TGAGCATTAAATTAGTGGTCACTCTCAACAAAAGTATGATGATTTTTTATGATAATGTCTAGCAA
259 TAAGCATTAAATTAGTGGTCACTCTCAACAAAAGTATGATGATTATTTATGATAATGTCTAGCAA
* * * * *
3818860 TGAATCATTATGTCCCACTAATTTTGGCTGGGAAGAAATTGGATGCCAACTTAGACGAGTTGCC-
324 TGAATCATTATGTCTCACTAATTTTGGTTGGGAAGAAATTGGATGCCAACATAGACTAGTTACCA
* * * * *
3818924 ATAAAACTAGTCAAAATAAATAAATAAAAATAAATTCTGAAAATTCCAAAAAAATAAAATTAATA
389 AT-AAACTAGTCAAAACAAACAAAAAAAAAAAAATTCTAAAAATTCCAAAAAAATAAAATTAATA
* * *
3818989 TTTGTCCCAAAAAGATTTTAGAAATAGG-ATAATGAAAAAGATCTTAATTGCAAATTAAAAACTT
453 TTTGTCACAAAAAGATTTTAGAAAT-GGAATAATGAAAAAGATCTTGATTGCAAATTAAAAACTC
* * *
3819053 GTAAATTTTTACGAGAAATACCTTGTTGTAGAAAAA-TCA-ATATA-AAAAAATTTAAAATTAAT
517 GTAAATTTTTACGAGAAATGCCTTGATGTAGAAAAATTAATATATACAAAAAATTTAAAATTAAT
* * *
3819115 AAAATAAATTAAATTTTTCAAAAATAAATTAATGGGAGTTCAACGACATCATTAGATGAATTCTA
582 GAAATAAATTAAAATTTTCAAAAATAAATTAATGGGAGTTCAATGACATCATTAGATGAATTCTA
* *
3819180 ACATTTTTAAACTGAAAAAAAAAATCCCTCCTAAAAAATTTATGAAGAA-AAAACTCGA-TTTTC
647 AAATTTTTAAACT--AAAAAAAAATCCCTCCTAAAAAATTTATGGAGAAGAAAACTCGATTTTTC
* * * *
3819243 AGAAAAAAAGAGATTTTCAAAGATAATTTCAAAACTCATGAAAATGAATTAATTTTTTTAAATTC
710 AAAAAAAAAGAGATTTTCAAAGATAAATTCAAAACTCATGAAAATGAATTAATTTTTTTAAACTG
*
3819308 AATTAATATGAATCAAATGATGATGTTTGATGAATATTAAAAGTTGAAAACTGTGAAAAATCCCT
775 AATTAATATGAATCAAATGATGATGTTTGATGAATATTAAAAGTTGAAAACTGAGAAAAATCCCT
* *** *
3819373 TTGAAAAAATTTACAAAGTAGAAAACGTTGTA-ATAAAAAAAATTCAAG-AAAAAATAAAAAACT
840 TTGAAAAAATTTACAGAGTAGAAAACACCGTATTTAAAAAAAATTCAAGAAAAAAATAAAAAACT
* *
3819436 CATGAAAATGAACGAATTTTTGAAAATTGAATTAATATGAAATAAATAATGATGTTTAATGAATT
905 CATGAAAATGAACGAATTTTTGAAAACTGAATTAATATGAAATAAATAATGATGTTTGATGAATT
3819501 TTAAAAATTAAAAACTAAGAA
970 TTAAAAATTAAAAACTAAGAA
3819522 AAATCTTGTGAAAACAAAAGCTAGCTTTATTTTTTTCTACCTATTTGTTTCTATTTTTTTCTTTC
1 AAATCTTGTGAAAACAAAAGCTAGCTTTATTTTTTTCTACCTATTTGTTTCTATTTTTTTCTTTC
* * * *
3819587 TTTCTTTTCTCCTTTTTTTCTCTCATTTTTTCAGTTGAACCTTCCTATTTGCTGCCAGCCTATGG
66 TTTCTTTTCTCCCTTTTTTCTCTCATTTTTTTAGCTGAACCTTCCTATTTGCTGCCAGCCCATGG
*
3819652 TGAAGGTGGATGACATCCATTTATAGAGGTCATTCATGGCAAAGAGATGGTGGGAAGCAACATGG
131 TGAAGGTGAATGACATCCATTTATAGAGGTCATTCATGGCAAAGAGATGGTGGGAAGCAACATGG
*
3819717 CCAAAATGGCCACCAAATTTCTTTTTTTTCATACTTTTTATTTATTTTATGCTATCAAAAGTTGT
196 CCAAAATGGCCACCAAATTTC-ATTTTTTCATACTTTTTATTTATTTTATGCTATCAAAAGTTGT
*
3819782 AAGCATTAAATTAGTGGTCACTCTCAACAAAAGTATGATGATTATTTATGATAATATCTAGCAAT
260 AAGCATTAAATTAGTGGTCACTCTCAACAAAAGTATGATGATTATTTATGATAATGTCTAGCAAT
* * *
3819847 GAATCATTATGTCT-ACTAATTTTAGTTGGGAAGAAATTGAATGCCAACATAAACTAGTTACCAA
325 GAATCATTATGTCTCACTAATTTTGGTTGGGAAGAAATTGGATGCCAACATAGACTAGTTACCAA
* *
3819911 TAAACTAATCAAAACAAACAAACAAAAAAAAAATTC-CAAAATTCCAAAAAAATAAAATTAATAT
390 TAAACTAGTCAAAACAAACAAA-AAAAAAAAAATTCTAAAAATTCCAAAAAAATAAAATTAATAT
* *
3819975 TTGTAACAAAAAGATTTTAGAAATGGAATAATGAAAACGATCTTGATTGCAAATTAAAAACTCGT
454 TTGTCACAAAAAGATTTTAGAAATGGAATAATGAAAAAGATCTTGATTGCAAATTAAAAACTCGT
3820040 AAATTTTTACGAGAAATGCCTTGATGTAGAAAAATTAATATATACAAAAAATTTAAAATTAATGA
519 AAATTTTTACGAGAAATGCCTTGATGTAGAAAAATTAATATATACAAAAAATTTAAAATTAATGA
*
3820105 AATAAATTAAAATTTTCAAAAATAAATTAATGTGAGTTCAATGACATCATTAGATGAATTCTAAA
584 AATAAATTAAAATTTTCAAAAATAAATTAATGGGAGTTCAATGACATCATTAGATGAATTCTAAA
* *
3820170 ATTTTTAAACTAAAAAAAAAATCCCTCTTAAAAAATTTACGGAGAAGAAAACTCGATTTTTC-AA
649 ATTTTTAAACT-AAAAAAAAATCCCTCCTAAAAAATTTATGGAGAAGAAAACTCGATTTTTCAAA
* ** *
3820234 AAAAAATAGATTTTCAAAGATATGTTCAAAACTCATAAAAATGAATTAATTTTTTTAAACTGAAT
713 AAAAAAGAGATTTTCAAAGATAAATTCAAAACTCATGAAAATGAATTAATTTTTTTAAACTGAAT
* *
3820299 TAATATGAATCAAATGATGATGTTTGATGAATATTAAAAGTTGAAAACCGAGAAAAATCCC-TTC
778 TAATATGAATCAAATGATGATGTTTGATGAATATTAAAAGTTGAAAACTGAGAAAAATCCCTTTG
*
3820363 AAAAAATTTACAGAGTAGAAAACACCGTATTT-AAAAAAATTCGAGAAAAAAATAAAAAACTCAT
843 AAAAAATTTACAGAGTAGAAAACACCGTATTTAAAAAAAATTCAAGAAAAAAATAAAAAACTCAT
* * *
3820427 GAAAATGAACAAATTTTTGAAAATTGAAGTAATATGAAATAAATAATGATGTTTGATGAATTTTA
908 GAAAATGAACGAATTTTTGAAAACTGAATTAATATGAAATAAATAATGATGTTTGATGAATTTTA
3820492 AAAATTAAAAACTAAGAA
973 AAAATTAAAAACTAAGAA
* *
3820510 AAATCTTGTGAAAACAAAAGCTAGCTTTATTTTTTTCTATCTATTTGTTTCTATTTTGTTTCTCT
1 AAATCTTGTGAAAACAAAAGCTAGCTTTATTTTTTTCTACCTATTTGTTTCTATTTT-TTTCTTT
* * *
3820575 CTTTTTTTTCTCCCTTTTTTCTCTCATTTTTTTAGCTGAAACTTCCTCTTTGCTGCCAGCCCATG
65 CTTTCTTTTCTCCCTTTTTTCTCTCATTTTTTTAGCTGAACCTTCCTATTTGCTGCCAGCCCATG
* * * *
3820640 GTGATGGTGAATGACATCCTTTTATAGAGGTCAGTCATGGCAAAGAGATGGTGGGAAGCGACATG
130 GTGAAGGTGAATGACATCCATTTATAGAGGTCATTCATGGCAAAGAGATGGTGGGAAGCAACATG
*
3820705 GCCAAAATGGCCACCAAATTTCCATTTTTTCATATTTTTTATTTATTTTATG-TCATCAAAAGTT
195 GCCAAAATGGCCACCAAATTT-CATTTTTTCATACTTTTTATTTATTTTATGCT-ATCAAAAGTT
*
3820769 GTGAA-CATTAAATTAGTGGTCACTCTCAACAAAAGTATGATGATTATTTATGATAATGTCTCGC
258 GT-AAGCATTAAATTAGTGGTCACTCTCAACAAAAGTATGATGATTATTTATGATAATGTCTAGC
* * *
3820833 AATGAATCATTATGTCTCACTAATTTTGGTTGGGAAAAAATTGGATGCCAACCTAGACTTGTTGG
322 AATGAATCATTATGTCTCACTAATTTTGGTTGGGAAGAAATTGGATGCCAACATAGACTAG-T--
*
3820898 TACCAATAAACTAGTCAAAATAAACAAATAAAATAAATAAATTCTAAAAATTCCAAAAAAATAAA
384 TACCAATAAACTAGTCAAAACAAACAAA-AAAA-AAA-AAATTCTAAAAATTCCAAAAAAATAAA
*
3820963 ATTAATATTTGTCACAAAAAGATTTTAGAAATGGAATAAT-AAAAAGATCTCGATTGCAAATTAA
446 ATTAATATTTGTCACAAAAAGATTTTAGAAATGGAATAATGAAAAAGATCTTGATTGCAAATTAA
* *
3821027 AAACTCGTAAATTTTTACGAGAAATGACTTGATGTAGAAAAATCAATATATACAAAAAAATTTAA
511 AAACTCGTAAATTTTTACGAGAAATGCCTTGATGTAGAAAAATTAATATATAC-AAAAAATTTAA
* *
3821092 AATTAATGAAATAAATTAAAATTTTCAAAAATGAATTAATAGGAGTTCAATGACATCATTAGATG
575 AATTAATGAAATAAATTAAAATTTTCAAAAATAAATTAATGGGAGTTCAATGACATCATTAGATG
* * * * * * *
3821157 AATTCTAAAATTTTTAAACTGAAAGAAAATCCCTCATAAAAAGTTTACGGAGAAGAAAAATCGGT
640 AATTCTAAAATTTTTAAACTAAAAAAAAATCCCTCCTAAAAAATTTATGGAGAAGAAAACTCGAT
*
3821222 TTTTCAAAAAAAAAGAGATTTTCAAAGATAAATTCAAAACTCATGAAAATGAATTAATTCTTTTA
705 TTTTCAAAAAAAAAGAGATTTTCAAAGATAAATTCAAAACTCATGAAAATGAATTAATTTTTTTA
* * *
3821287 AATTGAATTAATATGAATCAAATGATGATGTTTGATGAATTTTAAAAGTTGAAAACCGAGAAAAA
770 AACTGAATTAATATGAATCAAATGATGATGTTTGATGAATATTAAAAGTTGAAAACTGAGAAAAA
* *
3821352 TCCCCTTGAAAAAATTTACAGAGTAGAAAACACCGT-TTTAAAAAAAAAATTCAAGAAAAAAATC
835 TCCCTTTGAAAAAATTTACAGAGTAGAAAACACCGTATTT--AAAAAAAATTCAAGAAAAAAATA
*
3821416 AAAAACTCATGAAAATGAAGGAATTTTTGAAAACTGAATTAATATGAAATAAATAATGATGTTTG
898 AAAAACTCATGAAAATGAACGAATTTTTGAAAACTGAATTAATATGAAATAAATAATGATGTTTG
* *
3821481 ACGAATTTTAAAAATTCAAAACTAAGAA
963 ATGAATTTTAAAAATTAAAAACTAAGAA
3821509 AAATC
1 AAATC
3821514 CTCTCAAAAA
Statistics
Matches: 4563, Mismatches: 317, Indels: 128
0.91 0.06 0.03
Matches are distributed among these distances:
983 2 0.00
984 342 0.07
985 718 0.16
986 490 0.11
987 676 0.15
988 910 0.20
989 689 0.15
990 160 0.04
991 3 0.00
993 30 0.01
994 3 0.00
995 123 0.03
996 275 0.06
997 30 0.01
999 112 0.02
ACGTcount: A:0.43, C:0.12, G:0.12, T:0.33
Consensus pattern (990 bp):
AAATCTTGTGAAAACAAAAGCTAGCTTTATTTTTTTCTACCTATTTGTTTCTATTTTTTTCTTTC
TTTCTTTTCTCCCTTTTTTCTCTCATTTTTTTAGCTGAACCTTCCTATTTGCTGCCAGCCCATGG
TGAAGGTGAATGACATCCATTTATAGAGGTCATTCATGGCAAAGAGATGGTGGGAAGCAACATGG
CCAAAATGGCCACCAAATTTCATTTTTTCATACTTTTTATTTATTTTATGCTATCAAAAGTTGTA
AGCATTAAATTAGTGGTCACTCTCAACAAAAGTATGATGATTATTTATGATAATGTCTAGCAATG
AATCATTATGTCTCACTAATTTTGGTTGGGAAGAAATTGGATGCCAACATAGACTAGTTACCAAT
AAACTAGTCAAAACAAACAAAAAAAAAAAAATTCTAAAAATTCCAAAAAAATAAAATTAATATTT
GTCACAAAAAGATTTTAGAAATGGAATAATGAAAAAGATCTTGATTGCAAATTAAAAACTCGTAA
ATTTTTACGAGAAATGCCTTGATGTAGAAAAATTAATATATACAAAAAATTTAAAATTAATGAAA
TAAATTAAAATTTTCAAAAATAAATTAATGGGAGTTCAATGACATCATTAGATGAATTCTAAAAT
TTTTAAACTAAAAAAAAATCCCTCCTAAAAAATTTATGGAGAAGAAAACTCGATTTTTCAAAAAA
AAAGAGATTTTCAAAGATAAATTCAAAACTCATGAAAATGAATTAATTTTTTTAAACTGAATTAA
TATGAATCAAATGATGATGTTTGATGAATATTAAAAGTTGAAAACTGAGAAAAATCCCTTTGAAA
AAATTTACAGAGTAGAAAACACCGTATTTAAAAAAAATTCAAGAAAAAAATAAAAAACTCATGAA
AATGAACGAATTTTTGAAAACTGAATTAATATGAAATAAATAATGATGTTTGATGAATTTTAAAA
ATTAAAAACTAAGAA
Found at i:3820584 original size:13 final size:13
Alignment explanation
Indices: 3820539--3820607 Score: 54
Period size: 13 Copynumber: 5.5 Consensus size: 13
3820529 GCTAGCTTTA
*
3820539 TTTTTTTCTATCT
1 TTTTTTTCTCTCT
* * *
3820552 ATTTGTT-TCTAT
1 TTTTTTTCTCTCT
*
3820564 TTTGTTTCTCTCT
1 TTTTTTTCTCTCT
3820577 TTTTTTTCTC-C-
1 TTTTTTTCTCTCT
*
3820588 CTTTTTTCTCTCAT
1 TTTTTTTCTCTC-T
3820602 TTTTTT
1 TTTTTT
3820608 AGCTGAAACT
Statistics
Matches: 41, Mismatches: 11, Indels: 7
0.69 0.19 0.12
Matches are distributed among these distances:
11 9 0.22
12 9 0.22
13 18 0.44
14 5 0.12
ACGTcount: A:0.06, C:0.19, G:0.03, T:0.72
Consensus pattern (13 bp):
TTTTTTTCTCTCT
Found at i:3820584 original size:24 final size:23
Alignment explanation
Indices: 3820537--3820607 Score: 70
Period size: 24 Copynumber: 3.0 Consensus size: 23
3820527 AAGCTAGCTT
* *
3820537 TATTTTTTTCTATCTATTTGTTTC
1 TATTTTTTTCTCTCT-TTTTTTTC
3820561 TATTTTGTTTCTCTCTTTTTTTTC
1 TATTTT-TTTCTCTCTTTTTTTTC
** *
3820585 TCCCTTTTTTCTCTCATTTTTTT
1 T-ATTTTTTTCTCTCTTTTTTTT
3820608 AGCTGAAACT
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
24 29 0.73
25 11 0.28
ACGTcount: A:0.07, C:0.18, G:0.03, T:0.72
Consensus pattern (23 bp):
TATTTTTTTCTCTCTTTTTTTTC
Found at i:3821456 original size:160 final size:164
Alignment explanation
Indices: 3821257--3821654 Score: 463
Period size: 160 Copynumber: 2.4 Consensus size: 164
3821247 AGATAAATTC
* * *
3821257 AAAACTCATGAAAATGAATTAATTCTTT-TAAATTGAATTAATATG-AATCAAATGATGATGTTT
1 AAAACTCATGAAAATGAATGAATT-TTTGAAAACTGAATTAATATGAAAT-AAATGATGATGTTT
* * * **
3821320 GATGAATTTTAAAAGTTGAAAACCGAGAAAAATCCCCTTGAAAAAATTTAC-AGAGT-AGAAAAC
64 GATGAATTTTAAAAATTCAAAACCAAGAAAAATCCCCTCAAAAAAATTTACGA-AGTGA-AAAAC
* *
3821383 ACCGT-TTT-AAAAAAA-A-AA-TTCAAGAAAAAAATCA
127 ACCATATTTCAAAAAAATAGAATTTCAAG-AAAAAATAA
* *
3821417 AAAACTCATGAAAATGAAGGAATTTTTGAAAACTGAATTAATATGAAATAAATAATGATGTTTGA
1 AAAACTCATGAAAATGAATGAATTTTTGAAAACTGAATTAATATGAAATAAATGATGATGTTTGA
* * * *
3821482 CGAATTTTAAAAATTCAAAACTAAGAAAAATCCTCTCAAAAAAATTTACGAAGTGAAAAACACTA
66 TGAATTTTAAAAATTCAAAACCAAGAAAAATCCCCTCAAAAAAATTTACGAAGTGAAAAACACCA
*
3821547 TATTTCAAAAAAATTGAGAATTTCAAGGAAAAATAA
131 TATTTCAAAAAAA-T-AGAATTTCAAGAAAAAATAA
*** * * *
3821583 AAAAAGAATGAAAATGAATGAATTTTGGAAAACTGAATTAATATGAAATAAATGATAATATTTGA
1 AAAACTCATGAAAATGAATGAATTTTTGAAAACTGAATTAATATGAAATAAATGATGATGTTTGA
3821648 TGAATTT
66 TGAATTT
3821655 ATGTTTGAAA
Statistics
Matches: 201, Mismatches: 26, Indels: 16
0.83 0.11 0.07
Matches are distributed among these distances:
159 3 0.01
160 104 0.52
161 8 0.04
162 7 0.03
165 1 0.00
166 72 0.36
167 6 0.03
ACGTcount: A:0.51, C:0.08, G:0.12, T:0.28
Consensus pattern (164 bp):
AAAACTCATGAAAATGAATGAATTTTTGAAAACTGAATTAATATGAAATAAATGATGATGTTTGA
TGAATTTTAAAAATTCAAAACCAAGAAAAATCCCCTCAAAAAAATTTACGAAGTGAAAAACACCA
TATTTCAAAAAAATAGAATTTCAAGAAAAAATAA
Found at i:3824888 original size:12 final size:12
Alignment explanation
Indices: 3824873--3824948 Score: 57
Period size: 12 Copynumber: 5.9 Consensus size: 12
3824863 TCTATTATCT
3824873 CTCCTATCTCTC
1 CTCCTATCTCTC
3824885 CTCCTATCATC-C
1 CTCCTATC-TCTC
*
3824897 CTCTTATCTCTAC
1 CTCCTATCTCT-C
3824910 TCTTTCTCTATCTCTC
1 -C--TC-CTATCTCTC
*
3824926 CTCCTATCAC-C
1 CTCCTATCTCTC
3824937 CTTCCTATCTCT
1 C-TCCTATCTCT
3824949 TCTTTCTCTT
Statistics
Matches: 51, Mismatches: 4, Indels: 17
0.71 0.06 0.24
Matches are distributed among these distances:
11 4 0.08
12 30 0.59
13 5 0.10
14 1 0.02
15 1 0.02
16 3 0.06
17 7 0.14
ACGTcount: A:0.12, C:0.45, G:0.00, T:0.43
Consensus pattern (12 bp):
CTCCTATCTCTC
Found at i:3824930 original size:41 final size:39
Alignment explanation
Indices: 3824876--3824957 Score: 121
Period size: 41 Copynumber: 2.1 Consensus size: 39
3824866 ATTATCTCTC
*
3824876 CTATCTCTCCTCCTATCATCCC-TCTTATCTCTACTCTTTCT
1 CTATCTCTCCTCCTATCA-CCCTTCCTATCTCT--TCTTTCT
3824917 CTATCTCTCCTCCTATCACCCTTCCTATCTCTTCTTTCT
1 CTATCTCTCCTCCTATCACCCTTCCTATCTCTTCTTTCT
3824956 CT
1 CT
3824958 TTGAGGGGTA
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
39 9 0.23
40 3 0.08
41 27 0.69
ACGTcount: A:0.11, C:0.43, G:0.00, T:0.46
Consensus pattern (39 bp):
CTATCTCTCCTCCTATCACCCTTCCTATCTCTTCTTTCT
Found at i:3828146 original size:475 final size:474
Alignment explanation
Indices: 3826526--3829962 Score: 4240
Period size: 476 Copynumber: 7.2 Consensus size: 474
3826516 CCAAAGCATC
* * * * *
3826526 AGAATCGATGCTTTTCTTATTTAAGGGATGAACTCTGATTTTAAGGAAAAT-AGGCAAAAAAAAG
1 AGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTTAAGAAAAATAAGGCAAAGAAAAG
*
3826590 ATTTTCATGCAAAA-AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
66 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* ** * *
3826654 TAATCACAAAATGAATGAAGAGCATTTGTAGAATCGATGTTTGTCTCATTTGAGGCACAAACTTA
131 TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTA
* *
3826719 GACTTTACAAAAATTGGTGGGAAAGAAGCCATTCTTGCGAAACCAAAAG-ATCAATATCATGTAT
196 GACTTTACAAAAATTGGTGGGAAA-AAGCCTTTCTTGCGAAACC-AAAGCATCAATATGATGTAT
* * * * *
3826783 CCTAATAAGAAGACTGTATTTATGGTGCCTAAT-TTGGAAAAGAATGGGGATTAGTTTGACTATT
259 CCTAATGAGAAGACTATGTTTATGGTGCCTAATCTT-GAAAAGAATGGGGATTAGTATGAGTATT
* * * *
3826847 CATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAAAAAAGCTTTTC
323 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAAAGAAAAGCTTTT-
** * *
3826912 CTGCAACACCAAAGCATCAATGTCATGTCTCCTAGTGAAGGGAATGTGTTTTTGGTTCCCAATCT
387 CTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCT
3826977 TGAAAAGAATGGAGACTGTTACG
452 TGAAAAGAATGGAGACTGTTACG
* * * * * *
3827000 GGAATCAATGTTTTTCTTATTTAAGGAATGAACTTTGATTTTAAGAGAAAA-AGGGCAAATG-AA
1 AGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTTAAGA-AAAATAAGGCAAA-GAAA
* * *
3827063 AGATTTCCATGTAATAGAAAATCATCAATATCATTTACCCTAATGAGGAGAATGTGTTTATAGTG
64 AGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTG
* * * *
3827128 CATAATCACAAAATGAATAAAGATCATTTCTAGAATCCATGTTTGTCTCATTTGAGGCACGAACA
129 CCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACT
* * * * *
3827193 TGGACTTTAGAAAAATTGGTTTGAAAAAAGCCTTTCTTGCCAAACCAAAGCATCAATATGATGTA
194 TAGACTTTACAAAAATTGG-TGGGAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTA
* * *
3827258 TCCTAATTAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATT
258 TCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATT
* * *
3827323 CA-GATTTGTCTTATTTTAGAGATAAACTTTGATTCTATCAAAAACGGATAGAGAA-AAAAGCTT
323 CATG-TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAC-GATGGA-AAGAAAAGCTT
* * * * *
3827386 TTCTTGTGACATCGAAGCATCAAGGTCATGTATCCTAATGATGGGAATGTATTTTTGGTTCCCAA
385 TTC-TGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAA
** *
3827451 TCTTGAAAAGAGA-AAAGACTGCTACG
449 TCTTGAAAAGA-ATGGAGACTGTTACG
* * * * *
3827477 TGAATCGAAGCTTGTCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAAT-AGCACAAAGAAAA
1 AGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTTAAGAAAAATAAG-GCAAAGAAAA
* * * *
3827541 CATTTCAATGCAAAAGAAAATCATCAGTATCATTTATCCTAATGAAGAGAATGTGTTTATAGTGC
65 GATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* * *
3827606 CTAATCACAAAACGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGTGGCACGAACTT
130 CTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTT
* * * * * * *
3827671 AAACTTTACGAAAATTAGTTGGAGAAAAGCCTTTCTTGCAAAACCAAACCATTAATATGATGTAT
195 AGACTTTACAAAAATTGGTGGGA-AAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTAT
* * * * * *
3827736 CCTAATGAGAAGACTATGTATATGGAGCCTAATCTTGTAAAGATTGGGGATTAGTATAAGTACTC
259 CCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTC
* * * * * *
3827801 AGGCTTGACTTATTTATGAGACAAACTTTGATTCTATCAAAAACAATGGAAAGAAAAACTTTTAC
324 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAAAGAAAAGCTTTT-C
* * *
3827866 TGTGACACAAAAGCATCAATGTCATGTATCGTAATGAAGGGAATGTGTTTGTGGTTCCCAATCTT
388 TGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTT
*
3827931 GAAAACAATGGAGACTGTTACG
453 GAAAAGAATGGAGACTGTTACG
* * * *
3827953 AGAATTGAGGCTTG-CTTTTTTAAGGTATGAACTTTGATTTAAAGAAAAATAAGGCAAAGAAAAG
1 AGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTTAAGAAAAATAAGGCAAAGAAAAG
* * * * *
3828017 ATTGCCATGCAAAAGAAAATCATCAGTATCATCTATCCTAATGAGGAGAATATGTTTATAGTACC
66 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* ** * *
3828082 TAATCACAAAATGACT-ATAGATCATTAGAAGAATCCATGTTTGTCCCATTTGAGGCAGGAACTT
131 TAATCACAAAATGAATGA-AGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTT
* * * *
3828146 AGACTTTACAAAAATTAGTGGGAAAAATGCCTTTCTTGCGAAACCCAACCATCAATATCATGTAT
195 AGACTTTACAAAAATTGGTGGGAAAAA-GCCTTTCTTGCGAAACCAAAGCATCAATATGATGTAT
* * * *
3828211 CTTAATGAGAAAACTATATTTCTGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTC
259 CCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTC
* * * * *
3828276 ATGTTTGTCTTATATAGGAGGCAAACTTTGATTCTATCAAAAATGATGGCAAGAAAAGCTTTTCT
324 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAAAGAAAAGCTTTTCT
* *** * *** *
3828341 -TGCAATACCAAAGCATCAGCATCATGTATCCTAATGAAGAGAAT-ACATTTTGGCTTCCAAATC
389 GTG--ACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGG-TTCCCAATC
* * * *
3828404 TAGAAAAGAATGGGGATTATTACG
451 TTGAAAAGAATGGAGACTGTTACG
* * * * * *
3828428 AGAATCAATGCTTATCTTATTTAAGGAATGAACTTTGATTTTATGAAAAATAGGGCAAAGAAAAT
1 AGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTTAAGAAAAATAAGGCAAAGAAAAG
*
3828493 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCGAATGAGGAGAATGTGTTTATTA-TGC
66 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA-TAGTGC
** * * * *
3828557 CTAATCACAAAACAAATGAAGATCATTATTAGAATCTATGTTTGTCTCATTTGAGGTACGGACTT
130 CTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTT
* * * * * * * *
3828622 AGACTTTAAAAAAATTGGTGGGAGAAATGCCTTCCTTGCGACACCAAAACGTTAATATCATGTAT
195 AGACTTTACAAAAATTGGTGGGA-AAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTAT
*** * * * * *
3828687 CCTAATGAGAAGACTATGTTTATGACACTTAATCCTAAAAAGAATGGGGATTAATACGAGTATTC
259 CCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTC
* *
3828752 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGACGGAAAGAAAAGCTTTT-T
324 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAAAGAAAAGCTTTTCT
*
3828816 GTATGACACCAAAGCGTCAATGTCATGTATCCTAATGAAGGGAATGTG-TTTTGGCTTCCCAATC
389 G--TGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGG-TTCCCAATC
* * *
3828880 TTGAAAAGAATGGAAACTGTAACC
451 TTGAAAAGAATGGAGACTGTTACG
* * *
3828904 AGAATCGATGTTTGTCTTATATTAATGG-ATGAACTTTGATTTTAATAAACATAAGGCAAAGAAA
1 AGAATCGATGCTTGTCTTAT-TTAA-GGTATGAACTTTGATTTTAAGAAAAATAAGGCAAAGAAA
** * * * *
3828968 AGATTTCCATGTGAAAGAATATCATCAATATAATTTATCCTAAAGAGGAGAATGTATTTATAGTG
64 AGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTG
* * ** * * *
3829033 CCTAATCACAAAATGAGTGAAGATTATTAGAACAATCCATGTTTGTCTCATTTGAGGCATGGACT
129 CCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACT
* *
3829098 TAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCATGCAAAACCAAAGCATCAATATCG-TGT
194 TAGACTTTACAAAAATTGGTGGGAA-AAAGCCTTTCTTGCGAAACCAAAGCATCAATAT-GATGT
* * *
3829162 ATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAATAATGAGGATTAGTATGACTAT
257 ATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTAT
* * * *
3829227 TCATGTTTGTCTTATATAAGAGACAAAATTTTATTCTTTCAAAAACTG-TGGAAAGAAAAGCTTT
322 TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAC-GATGGAAAGAAAAGCTTT
* * * * *
3829291 TCTTGCGACACCAAAGCATGAATGTCATGTATCCTAATGAAGGGAATATATTTTTGCTTCCCAAT
386 TC-TGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAAT
* *
3829356 CTAGACATA-AATAGG-GACTGTTACG
450 CTTGA-AAAGAAT-GGAGACTGTTACG
* * * *
3829381 AGAAACGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTAAAGAAAAATAGGGTAAAGAAAAG
1 AGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTTAAGAAAAATAAGGCAAAGAAAAG
* ** * * *
3829446 ATTTCCAAGCAAAA-AAAAAAATAAATATCATTTATTCTAATGAGGAGAATATGTTTATAGTGCC
66 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* **
3829510 TAATCACAAAATGAATGAAGATCATTACTACAATCCACATTTGTCTCATTTGAGGCACGAACTTA
131 TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTA
*
3829575 GACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCCTGCGAAACCAAAGCATCAATATGATGTATC
196 GACTTTACAAAAATTGGTGGG-AAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATC
* * * * *
3829640 CTAATGAGAAGACTATGTTTATGGTGCCTATTCCTAAAAAGAATAGGGATTAGTATGACTATTCA
260 CTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTCA
* * * *
3829705 TGTTTGTCGTATTTAAGAGATAAACTTTGATTCTATCAAAAACAATGGAAATAAAAGCTTTTCTT
325 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAAAGAAAAGCTTTTC-T
* * * * *
3829770 GCGACACCAAGGCACCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTTGTTCCTAATCTTG
389 GTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTG
* * *
3829835 AAAAGAAGGGAGATTATTACG
454 AAAAGAATGGAGACTGTTACG
* * *
3829856 AGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATTAGGCAAAGAAAAG
1 AGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTTAAGAAAAATAAGGCAAAGAAAAG
* * * *
3829921 ATTTCAATGTAGCAA-AAAATCATTAATATCATTTATCCTAAT
66 ATTTCCATGCA-AAAGAAAATCATCAATATCATTTATCCTAAT
3829963 TGTAGACACC
Statistics
Matches: 2529, Mismatches: 382, Indels: 102
0.84 0.13 0.03
Matches are distributed among these distances:
473 2 0.00
474 57 0.02
475 827 0.33
476 831 0.33
477 792 0.31
478 18 0.01
479 2 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (474 bp):
AGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTTAAGAAAAATAAGGCAAAGAAAAG
ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTA
GACTTTACAAAAATTGGTGGGAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCC
TAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTCAT
GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAAAGAAAAGCTTTTCTGT
GACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAA
AAGAATGGAGACTGTTACG
Found at i:3828629 original size:476 final size:474
Alignment explanation
Indices: 3826526--3829962 Score: 4224
Period size: 475 Copynumber: 7.2 Consensus size: 474
3826516 CCAAAGCATC
* * * * *
3826526 AGAATCGATGCTTTTCTTATTTAAGGGATGAACTCTGATTTTAAGGAAAATA-GGCAAAAAAAAG
1 AGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAG
*
3826590 ATTTTCATGCAAAA-AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
66 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* * *
3826654 TAATCACAAAATGAATGAAGAGCATT-TGTAGAATCGATGTTTGTCTCATTTGAGGCACAAACTT
131 TAATCACAAAATGAATGAAGATCATTAT-TAGAATCCATGTTTGTCTCATTTGAGGCACGAACTT
*
3826718 AGACTTTACAAAAATTGGTGGGAAAGAAGCCATTCTTGCGAAACCAAAAG-ATCAATATCATGTA
195 AGACTTTACAAAAATTGGTGGGAAA-AAGCCTTTCTTGCGAAACC-AAAGCATCAATATCATGTA
* * * * *
3826782 TCCTAATAAGAAGACTGTATTTATGGTGCCTAAT-TTGGAAAAGAATGGGGATTAGTTTGACTAT
258 TCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTT-GAAAAGAATGGGGATTAGTATGAGTAT
* * * *
3826846 TCATGTTTGTCGTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAAAAAAGCTTTT
322 TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAAAGAAAAGCTTTT
* * * *
3826911 CCTGCAACACCAAAGCATCAATGTCATGTCTCCTAGTGAAGGGAATGTGTTTTTGGTTCCCAATC
387 CTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGT-ATTTTGGTTCCCAATC
3826976 TTGAAAAGAATGGAGACTGTTACG
451 TTGAAAAGAATGGAGACTGTTACG
* * * * *
3827000 GGAATCAATGTTTTTCTTATTTAAGGAATGAACTTTGATTTTAAGAGAAAA-AGGGCAAATG-AA
1 AGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTTAAGA-AAAATAGGGCAAA-GAAA
* * *
3827063 AGATTTCCATGTAATAGAAAATCATCAATATCATTTACCCTAATGAGGAGAATGTGTTTATAGTG
64 AGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTG
* *
3827128 CATAATCACAAAATGAATAAAGATCATT-TCTAGAATCCATGTTTGTCTCATTTGAGGCACGAAC
129 CCTAATCACAAAATGAATGAAGATCATTAT-TAGAATCCATGTTTGTCTCATTTGAGGCACGAAC
* * * * * * *
3827192 ATGGACTTTAGAAAAATTGGTTTGAAAAAAGCCTTTCTTGCCAAACCAAAGCATCAATATGATGT
193 TTAGACTTTACAAAAATTGG-TGGGAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGT
* * *
3827257 ATCCTAATTAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTAT
257 ATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTAT
* * *
3827322 TCA-GATTTGTCTTATTTTAGAGATAAACTTTGATTCTATCAAAAACGGATAGAGAA-AAAAGCT
322 TCATG-TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAC-GATGGA-AAGAAAAGCT
** * * * *
3827385 TTTCTTGTGACATCGAAGCATCAAGGTCATGTATCCTAATGATGGGAATGTATTTTTGGTTCCCA
384 TTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTA-TTTTGGTTCCCA
** *
3827450 ATCTTGAAAAGAGA-AAAGACTGCTACG
448 ATCTTGAAAAGA-ATGGAGACTGTTACG
* * * * ** *
3827477 TGAATCGAAGCTTGTCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGCACAAAGAAAAC
1 AGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAG
* * *
3827542 ATTTCAATGCAAAAGAAAATCATCAGTATCATTTATCCTAATGAAGAGAATGTGTTTATAGTGCC
66 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* * * *
3827607 TAATCACAAAACGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGTGGCACGAACTTA
131 TAATCACAAAATGAATGAAGATCATTATTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTA
* * * * * * * *
3827672 AACTTTACGAAAATTAGTTGGAGAAAAGCCTTTCTTGCAAAACCAAACCATTAATATGATGTATC
196 GACTTTACAAAAATTGGTGGGA-AAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATC
* * * * * *
3827737 CTAATGAGAAGACTATGTATATGGAGCCTAATCTTGTAAAGATTGGGGATTAGTATAAGTACTCA
260 CTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTCA
* * * * * *
3827802 GGCTTGACTTATTTATGAGACAAACTTTGATTCTATCAAAAACAATGGAAAGAAAAACTTTTACT
325 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAAAGAAAAGCTTTT-CT
* * *
3827867 GTG--ACACAAAAGCATCAATGTCATGTATCGTAATGAAGGGAATGTGTTTGTGGTTCCCAATCT
389 -TGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTATTT-TGGTTCCCAATCT
*
3827930 TGAAAACAATGGAGACTGTTACG
452 TGAAAAGAATGGAGACTGTTACG
* * * * *
3827953 AGAATTGAGGCTTG-CTTTTTTAAGGTATGAACTTTGATTTAAAGAAAAATAAGGCAAAGAAAAG
1 AGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAG
* * * * *
3828017 ATTGCCATGCAAAAGAAAATCATCAGTATCATCTATCCTAATGAGGAGAATATGTTTATAGTACC
66 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* ** * *
3828082 TAATCACAAAATGACT-ATAGATCATTAGAAGAATCCATGTTTGTCCCATTTGAGGCAGGAACTT
131 TAATCACAAAATGAATGA-AGATCATTATTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTT
* * *
3828146 AGACTTTACAAAAATTAGTGGGAAAAATGCCTTTCTTGCGAAACCCAACCATCAATATCATGTAT
195 AGACTTTACAAAAATTGGTGGGAAAAA-GCCTTTCTTGCGAAACCAAAGCATCAATATCATGTAT
* * * *
3828211 CTTAATGAGAAAACTATATTTCTGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTC
259 CCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTC
* * * * *
3828276 ATGTTTGTCTTATATAGGAGGCAAACTTTGATTCTATCAAAAATGATGGCAAGAAAAGCTTTTCT
324 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAAAGAAAAGCTTTTCT
* *** * ** * *
3828341 TGCAATACCAAAGCATCAGCATCATGTATCCTAATGAAGAGAATACATTTTGGCTTCCAAATCTA
389 TGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTATTTTGG-TTCCCAATCTT
* * *
3828406 GAAAAGAATGGGGATTATTACG
453 GAAAAGAATGGAGACTGTTACG
* * * * *
3828428 AGAATCAATGCTTATCTTATTTAAGGAATGAACTTTGATTTTATGAAAAATAGGGCAAAGAAAAT
1 AGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAG
*
3828493 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCGAATGAGGAGAATGTGTTTATTA-TGC
66 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA-TAGTGC
** * * *
3828557 CTAATCACAAAACAAATGAAGATCATTATTAGAATCTATGTTTGTCTCATTTGAGGTACGGACTT
130 CTAATCACAAAATGAATGAAGATCATTATTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTT
* * * * * * *
3828622 AGACTTTAAAAAAATTGGTGGGAGAAATGCCTTCCTTGCGACACCAAAACGTTAATATCATGTAT
195 AGACTTTACAAAAATTGGTGGGA-AAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTAT
*** * * * * *
3828687 CCTAATGAGAAGACTATGTTTATGACACTTAATCCTAAAAAGAATGGGGATTAATACGAGTATTC
259 CCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTC
* *
3828752 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGACGGAAAGAAAAGC-TTT-T
324 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAAAGAAAAGCTTTTCT
* * *
3828815 TGTATGACACCAAAGCGTCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATC
389 TGCA--ACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTATTTTGG-TTCCCAATC
* * *
3828880 TTGAAAAGAATGGAAACTGTAACC
451 TTGAAAAGAATGGAGACTGTTACG
* * * *
3828904 AGAATCGATGTTTGTCTTATATTAATGG-ATGAACTTTGATTTTAATAAACATAAGGCAAAGAAA
1 AGAATCGATGCTTGTCTTAT-TTAA-GGTATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAA
** * * * *
3828968 AGATTTCCATGTGAAAGAATATCATCAATATAATTTATCCTAAAGAGGAGAATGTATTTATAGTG
64 AGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTG
* * ** * * *
3829033 CCTAATCACAAAATGAGTGAAGATTATTAGAACAATCCATGTTTGTCTCATTTGAGGCATGGACT
129 CCTAATCACAAAATGAATGAAGATCATTATTAGAATCCATGTTTGTCTCATTTGAGGCACGAACT
* * *
3829098 TAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCATGCAAAACCAAAGCATCAATATCGTGTA
194 TAGACTTTACAAAAATTGGTGGGAA-AAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTA
* * *
3829163 TCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAATAATGAGGATTAGTATGACTATT
258 TCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATT
* * * *
3829228 CATGTTTGTCTTATATAAGAGACAAAATTTTATTCTTTCAAAAACTG-TGGAAAGAAAAGCTTTT
323 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAC-GATGGAAAGAAAAGCTTTT
* * * *
3829292 CTTGCGACACCAAAGCATGAATGTCATGTATCCTAATGAAGGGAATATATTTTTGCTTCCCAATC
387 CTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTA-TTTTGGTTCCCAATC
* *
3829357 TAGACATA-AATAGG-GACTGTTACG
451 TTGA-AAAGAAT-GGAGACTGTTACG
* * *
3829381 AGAAACGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTAAAGAAAAATAGGGTAAAGAAAAG
1 AGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAG
* ** * * *
3829446 ATTTCCAAGCAAAA-AAAAAAATAAATATCATTTATTCTAATGAGGAGAATATGTTTATAGTGCC
66 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* * **
3829510 TAATCACAAAATGAATGAAGATCATTACTACAATCCACATTTGTCTCATTTGAGGCACGAACTTA
131 TAATCACAAAATGAATGAAGATCATTATTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTA
* *
3829575 GACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCCTGCGAAACCAAAGCATCAATATGATGTATC
196 GACTTTACAAAAATTGGTGGG-AAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATC
* * * * *
3829640 CTAATGAGAAGACTATGTTTATGGTGCCTATTCCTAAAAAGAATAGGGATTAGTATGACTATTCA
260 CTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTCA
* * * *
3829705 TGTTTGTCGTATTTAAGAGATAAACTTTGATTCTATCAAAAACAATGGAAATAAAAGCTTTTCTT
325 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAAAGAAAAGCTTTTCTT
* * * * * *
3829770 GCGACACCAAGGCACCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTTGTTCCTAATCTTG
390 GCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGT-ATTTTGGTTCCCAATCTTG
* * *
3829835 AAAAGAAGGGAGATTATTACG
454 AAAAGAATGGAGACTGTTACG
* *
3829856 AGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATTA-GGCAAAGAAAA
1 AGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTTAA-GAAAAATAGGGCAAAGAAAA
* * * *
3829920 GATTTCAATGTAGCAA-AAAATCATTAATATCATTTATCCTAAT
65 GATTTCCATGCA-AAAGAAAATCATCAATATCATTTATCCTAAT
3829963 TGTAGACACC
Statistics
Matches: 2527, Mismatches: 385, Indels: 100
0.84 0.13 0.03
Matches are distributed among these distances:
473 2 0.00
474 59 0.02
475 829 0.33
476 823 0.33
477 790 0.31
478 21 0.01
479 3 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (474 bp):
AGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAG
ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
TAATCACAAAATGAATGAAGATCATTATTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTA
GACTTTACAAAAATTGGTGGGAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCC
TAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTCAT
GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAAAGAAAAGCTTTTCTTG
CAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTATTTTGGTTCCCAATCTTGAA
AAGAATGGAGACTGTTACG
Done.