Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold407
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4418299
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 127125 characters in sequence are not A, C, G, or T
File 25 of 28
Found at i:3833468 original size:61 final size:62
Alignment explanation
Indices: 3833372--3833497 Score: 218
Period size: 61 Copynumber: 2.0 Consensus size: 62
3833362 CATCAATATG
* *
3833372 ATGTATGCCTATGAGAAGACTATGTTTATGATGCCTAATCCTG-AAAAGAATAGGGATTAGT
1 ATGTATGCCAATGAGAAGACTATGTTTATGATGCCTAATCCTGAAAAAAAATAGGGATTAGT
*
3833433 ATGTATGCCAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAAAAATAGGGATTAGT
1 ATGTATGCCAATGAGAAGACTATGTTTATGATGCCTAATCCTGAAAAAAAATAGGGATTAGT
3833495 ATG
1 ATG
3833498 ATTATTCATG
Statistics
Matches: 61, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
61 41 0.67
62 20 0.33
ACGTcount: A:0.36, C:0.11, G:0.23, T:0.30
Consensus pattern (62 bp):
ATGTATGCCAATGAGAAGACTATGTTTATGATGCCTAATCCTGAAAAAAAATAGGGATTAGT
Found at i:3834867 original size:478 final size:476
Alignment explanation
Indices: 3834142--3836994 Score: 3243
Period size: 475 Copynumber: 6.0 Consensus size: 476
3834132 GGAACGAACA
* * * * * * * * * *
3834142 TTGATTCTAACAAAAATGATAGAAAG-AAAGCTTTTTTTGCGACACCCAAGCATTAATCTCATGT
1 TTGATTCTATCAAAAACGGTGGAACGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGT
* * * * ** * * * * *
3834206 ATGCTAATGAAGGGAATATGTTTTTGGATCGTATTTTTG-AAAATATGGGAGACTATTATGAGAA
66 ATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAAAAT-GGAGACTGTTACGAGAA
* * * *
3834270 TCGA----TG-CTT-TTTAAGGGATGAACTTTGATTT-TATGAAAATTATGGCAAAGAAAAGATT
130 TCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAA-TAGGGCAAAGAAAAGATT
* * * * * *
3834328 TTCACA-CAAAAAAAAATCATCAGTATCATTTATCCTAATGTGGAGAATGTGTTTATAGTGCCTG
194 TCCA-AGCAAAAGAAAATCATCAATATCATTTATCCTAACGAGGAGAATGTGTTTATAGTGCCTA
*
3834392 ATCACAAAATGAATGAAGATCATTACTAGAAATTCATGTTTGTCTCATTTAAGGCACAAACTTAG
258 ATCACAAAATGAATGAAGATCATTACTAG-AATCCATGTTTGTCTCATTTAAGGCACAAACTTAG
* *
3834457 ACTTTACAAAAATTAGTGCAAAAAAAGCCTTTCTTGCAAAACCAAAGAATCAATATGATGTATCC
322 ACTTTACAAAAATTGGTGCAAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCC
* * * *
3834522 TAATGAGAAGACTATATTTATGGTGCCTAATCTTGAAAAGAATGTGGGATTAGTTTGATTATTCA
387 TAATGAGAAGACTATATTTATAGTGCCTAATCCTGAAAAGAATG-GGGATTAGTATGAGTATTCA
* *
3834587 TTTTTGTCTTATTTATGAGACAAGCT
451 TGTTTGTCTTATTTAAGAGACAAGCT
* *
3834613 TTGATTCTATCAAAAACGGTGGAACGAAAAGCTTTTCTTGCAACCCCAAAGCATCAATGTCATAT
1 TTGATTCTATCAAAAACGGTGGAACGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGT
** * ** *
3834678 ATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCCAGAAAAAAAATAGAGACTACTATGAGAA
66 ATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTG-AAAAAAATGGAGACTGTTACGAGAA
*
3834743 TTGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGC-AAGAAAAGATTT
130 TCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTT
* * * *
3834807 CCAAGCAAAATAAAATCATCAATATCATTTATCCTAACGAGAAGAATGTGTTTTTAGTGCCTGAT
195 CCAAGCAAAAGAAAATCATCAATATCATTTATCCTAACGAGGAGAATGTGTTTATAGTGCCTAAT
* * * *
3834872 CACAAAATGAATGATGATCATTACTAGAATTCATGTTTGTTTCATTTAAGGCACAACCTTAGACT
260 CACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCACAAACTTAGACT
* * *
3834937 TTACAAAAATTGGTGCCAAAAAAGCCATTCTTGCAAAACCAAAGCATCAATGTGATGTATCCTAA
325 TTACAAAAATTGGTGCAAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCCTAA
* * * *
3835002 TGAGAAGACTATATTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTTTGAGTATTCATTTT
390 TGAGAAGACTATATTTATAGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTT
* *
3835067 TATCTTATTTATGAGACAAGCT
455 TGTCTTATTTAAGAGACAAGCT
* * * *
3835089 TTGATTTTATCAAAAACGGTGAAACGAAAAGCTTTTTTTGCAACCCCAAAGCATCAATGTCATGT
1 TTGATTCTATCAAAAACGGTGGAACGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGT
* * * * **
3835154 ACCCTAATGAAAGAAATGTGTTTTTGGTTCCCAATCCTGAAAAAAAAATAGAGACTACTACGAGA
66 ATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTG--AAAAAAATGGAGACTGTTACGAGA
*
3835219 ATCGATGTTTGTCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATT
129 ATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATT
* *
3835284 TCCAAGCAAAATAAAATCATCAATATCATTTGTCCTAACGAGGAGAATGTGTTTATAGTGCCTAA
194 TCCAAGCAAAAGAAAATCATCAATATCATTTATCCTAACGAGGAGAATGTGTTTATAGTGCCTAA
* * * * * **
3835349 TCACAAAAAGAATGAAGATCATTACTAGAATCCATGTTTGCCTCATGTGAGGTATGAACTTAGAC
259 TCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCACAAACTTAGAC
* * *
3835414 TTTACAAAAATTGGT-AAGAAAAAAGCCTTTC-CG-ATGAAACCAAAACATCAATATGATGTATC
324 TTTACAAAAATTGGTGCA-AAAAAAGCCTTTCTTGCA--AAACCAAAGCATCAATATGATGTATC
* * * * *
3835476 TTAAGGAGAAGACTATGTTTCTAGTGCCTAAACCTGAAAAGAATGGGGATTAGTATGAGTATTCA
386 CTAATGAGAAGACTATATTTATAGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCA
* *
3835541 AGTTTGTCTTATTTAAGAGACAAACT
451 TGTTTGTCTTATTTAAGAGACAAGCT
* * * * * *
3835567 TTGATTCTATCAAAAA-TGTCGAAAAGAAATGCTTTTGTTACAACACCAAAGCATCAATGTCAT-
1 TTGATTCTATCAAAAACGGT-GGAACGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATG
* ** * * * *
3835630 TATCCTAGTGATGGGATTGTGTCTTTGGTTCCCAATCTTGAAAAAAATGGACACTGTTACGAAAA
65 TATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAAAATGGAGACTGTTACGAGAA
* * * * * *
3835695 TCAATGCTTGTCTTATTTAAGGTATTAACTTTGATTTAATGGAATACATGGCAAAGAAAAGATTT
130 TCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTT
3835760 CCAAGCAAAAGAAAATCATCAATATCATTTATCCTAACGAGGAGAATGTGTTTATAGTGCCTAAT
195 CCAAGCAAAAGAAAATCATCAATATCATTTATCCTAACGAGGAGAATGTGTTTATAGTGCCTAAT
* * *
3835825 CACAAAATGAATGAAGATCATTACTAGAATCAATGTTTGTCTTATTTGAGGCACAAACTTAGAC-
260 CACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCACAAACTTAGACT
** * * *
3835889 TTACAAAAATT-GTGGGGAAAAAAGACTTTCCTGCAAAATCAAAGCATCAATATGATGTATCCTA
325 TTACAAAAATTGGT-GCAAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCCTA
** * * * * *
3835953 ATGAGAAGACTATGCTTATAGAGCTTAATCCTAAAAAGAATGGGGATTAGTATAAGTATTCAAGT
389 ATGAGAAGACTATATTTATAGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGT
*
3836018 TTGTCTTATTTTAGAGACAAGCT
454 TTGTCTTATTTAAGAGACAAGCT
* * **
3836041 TTAATTCTATCAAAAATGGTGGAAAC-AAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATG
1 TTGATTCTATCAAAAACGGTGG-AACGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATG
* * ** *
3836105 TATCCTAAAG-ATGAGAATGTGTTTTTGGTTCCCAATCTTGAAAAAAATGGAGACTGTTATAAAA
65 TATCCTAATGAAAG-GAATGTGTTTTTGGTTCCCAATCTTGAAAAAAATGGAGACTGTTACGAGA
* * * * *
3836169 ATCGATGCTTGTTTTATTTAAGGTACGAAATTTGATTTAAAGAAAAATAGGACAAAGAAAAGATT
129 ATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATT
* *
3836234 TCCAAGCAAAAGAAAATTATCAATATCATTTATCC-ATACGAGGAGAATGTGTTTATAGTGACTA
194 TCCAAGCAAAAGAAAATCATCAATATCATTTATCCTA-ACGAGGAGAATGTGTTTATAGTGCCTA
* * * * * * *
3836298 ATCACAAAATGAATGAAGATTATTCCTAAAATCCATGTTTGTCTCATTTAAGGAACGAGCTTGGA
258 ATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCACAAACTTAGA
** ** * ** *
3836363 CTTTACAAAGCTTGGTGGGAAAAAAGGCTTTCTTGTGAAACCAAAGCATTAATATGATGTATCCT
323 CTTTACAAAAATTGGTGCAAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCCT
* *
3836428 AATGAGAAAACTATGTTTATCA-TGCCTAATCCTGAAAA-AA-----A-T-G--T--G---TCAT
388 AATGAGAAGACTATATTTAT-AGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCAT
* *
3836477 GTTTGACTTATTTAAGAGATAAGCT
452 GTTTGTCTTATTTAAGAGACAAGCT
* * * ** * * * *
3836502 TTGGTTCTATCAAAAACGATTGAAAAAAAAGTTTTTCTTGCGACACCAAAGTAGCAATGTCATGT
1 TTGATTCTATCAAAAACGGTGGAACGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGT
* * * * *
3836567 ATCTTAAAG-AAGAGAATGTGTTTTTGGATCCCATTCTTGAAAAAAATGGAGACTGTTAGGAGAA
66 ATCCTAATGAAAG-GAATGTGTTTTTGGTTCCCAATCTTGAAAAAAATGGAGACTGTTACGAGAA
* * * * *
3836631 TCGAAGCTTGCCTTATTTAAGGTATGAACTTTGATTTTAAGGAAAATCA-GGTAGAGAAAAGATT
130 TCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAAT-AGGGCAAAGAAAAGATT
* * * * * * * ** *
3836695 TTCATGTAATAGAAAATTATTAATATCATTTATCTTAATAAGGGGAATGTGTTTATAGTGCCTAA
194 TCCAAGCAAAAGAAAATCATCAATATCATTTATCCTAACGAGGAGAATGTGTTTATAGTGCCTAA
* * * * * *
3836760 TTAGAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTC-TTTCAAGACACGAGCTTCGA
259 TCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT-AAGGCACAAACTTAGA
* * * ** *
3836824 TTTTACAAAAAATTGGCG-AGAAAAAAGCCTTTCTTGCAAAACCAAAGCATTAATATGATGCGTT
323 CTTTAC-AAAAATTGGTGCA-AAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATC
* * * * * * *
3836888 TTAATGAGAAGATTACGA-TTATAATGCCTAAACTTGAAAAGAATGGGGATTAGTATAAGTATTC
386 CTAATGAGAAGACTA-TATTTATAGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTC
* * *
3836952 GTATTTGTCTTATTTAAGAGACAAACT
450 ATGTTTGTCTTATTTAAGAGACAAGCT
*
3836979 TTGATTCTATTAAAAA
1 TTGATTCTATCAAAAA
3836995 TAGTGGTAAA
Statistics
Matches: 2057, Mismatches: 273, Indels: 98
0.85 0.11 0.04
Matches are distributed among these distances:
460 5 0.00
461 297 0.14
462 78 0.04
463 2 0.00
464 1 0.00
466 1 0.00
468 2 0.00
469 2 0.00
470 2 0.00
471 21 0.01
472 61 0.03
473 20 0.01
474 184 0.09
475 427 0.21
476 226 0.11
477 291 0.14
478 405 0.20
479 26 0.01
480 6 0.00
ACGTcount: A:0.38, C:0.13, G:0.17, T:0.32
Consensus pattern (476 bp):
TTGATTCTATCAAAAACGGTGGAACGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGT
ATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAAAATGGAGACTGTTACGAGAAT
CGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTC
CAAGCAAAAGAAAATCATCAATATCATTTATCCTAACGAGGAGAATGTGTTTATAGTGCCTAATC
ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCACAAACTTAGACTT
TACAAAAATTGGTGCAAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCCTAAT
GAGAAGACTATATTTATAGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTT
GTCTTATTTAAGAGACAAGCT
Found at i:3835154 original size:159 final size:158
Alignment explanation
Indices: 3834422--3836112 Score: 596
Period size: 159 Copynumber: 10.7 Consensus size: 158
3834412 CATTACTAGA
* * * * ** * *
3834422 AATTCATGTTTGTCTCATTTAAGGCACAAACTTAGACTTTA-CAAAAATTAGTGCAAAAAAAGCC
1 AATTCATGTTTGTCTTATTTAAGGCACAAGCTTTGATTTTATCAAAAA-CGGTGCAAGAAAAGCT
* * * *
3834486 TTTCTTGCAAAACCAAAGAATCAATATGATGTATCCTAATGAGAAGACTATATTTATGGTGCCTA
65 TTTCTTGCAAAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGAATATATTTATGGTGCCTA
* *
3834551 ATCTTGAAAAGAATGTGGGATTAGTTTGAT
130 ATCTAGAAAAGAATG-GGGATTAGTTTGAG
* * * * *
3834581 TATTCATTTTTGTCTTATTTATGAG-ACAAGCTTTGATTCTATCAAAAACGGTGGAACGAAAAGC
1 AATTCATGTTTGTCTTATTTAAG-GCACAAGCTTTGATTTTATCAAAAACGGTGCAA-GAAAAGC
** * * * * *
3834645 TTTTCTTGCAACCCCAAAGCATCAATGTCATATATCCTAATGA-AAGGAATGTGTTTTTGGTTCC
64 TTTTCTTGCAAAACCAAAGCATCAATGTCATGTATCCTAATGAGAA-GAATATATTTATGGTGCC
* * * * * * * *
3834709 CAATCCAGAAAAAAAATAGAGACTACTATGAG
128 TAATCTAG-AAAAGAATGGGGATTAGTTTGAG
* * * * * **
3834741 AATTGATGCTTGTCTTATTTAAGGTATGAA-CTTTGATTTAAAGGAAAATA-GG-GCAAGAAAAG
1 AATTCATGTTTGTCTTATTTAAGGCA-CAAGCTTTGATTT-TATCAAAA-ACGGTGCAAGAAAAG
* * ** ** * * * * * * * *
3834803 ATTTCCAAGCAAAATAAAATCATCAATATCATTTATCCTAACGAGAAGAATGTGTTTTTAGTGCC
63 CTTTTCTTGCAAAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGAATATATTTATGGTGCC
* * ** *
3834868 TGATC-ACAAAATGAATGATGATCA-TTACT-AG
128 TAATCTAGAAAA-GAATGGGGATTAGTT--TGAG
* * * *
3834899 AATTCATGTTTGT-TTCATTTAAGGCACAACCTTAGACTTTA-CAAAAATTGGTGCCAA-AAAAG
1 AATTCATGTTTGTCTT-ATTTAAGGCACAAGCTTTGATTTTATCAAAAA-CGGTG-CAAGAAAAG
** * *
3834961 CCATTCTTGCAAAACCAAAGCATCAATGTGATGTATCCTAATGAGAAGACTATATTTATGGTGCC
63 CTTTTCTTGCAAAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGAATATATTTATGGTGCC
*
3835026 TAATCTTGAAAAGAATGGGGATTAGTTTGAG
128 TAATCTAGAAAAGAATGGGGATTAGTTTGAG
* * * * *
3835057 TATTCATTTTTATCTTATTTATGAG-ACAAGCTTTGATTTTATCAAAAACGGTGAAACGAAAAGC
1 AATTCATGTTTGTCTTATTTAAG-GCACAAGCTTTGATTTTATCAAAAACGGTGCAA-GAAAAGC
* ** * * * * *
3835121 TTTTTTTGCAACCCCAAAGCATCAATGTCATGTACCCTAATGA-AAGAAATGTGTTTTTGGTTCC
64 TTTTCTTGCAAAACCAAAGCATCAATGTCATGTATCCTAATGAGAAG-AATATATTTATGGTGCC
* * * * * * * **
3835185 CAATCCTGAAAAAAAAATAGAGACTACTACGAG
128 TAAT-CT-AGAAAAGAATGGGGATTAGTTTGAG
* * * **
3835218 AA-TCGATGTTTGTCTTATTTAAGGTATGAA-CTTTGATTTAAAGGAAAATA-GG-GCAAAGAAA
1 AATTC-ATGTTTGTCTTATTTAAGGCA-CAAGCTTTGATTT-TATCAAAA-ACGGTGC-AAGAAA
* * ** ** * * * * * * * * *
3835279 AGATTTCCAAGCAAAATAAAATCATCAATATCATTTGTCCTAACGAGGAGAATGTGTTTATAGTG
61 AGCTTTTCTTGCAAAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGAATATATTTATGGTG
* ** *
3835344 CCTAATC-ACAAAAAGAATGAAGATCA-TTACT-AG
126 CCTAATCTA-GAAAAGAATGGGGATTAGTT--TGAG
* * * * * * * * * *
3835377 AATCCATGTTTGCCTCATGTGAGGTATGAA-CTTAGACTTTA-CAAAAATTGGT--AAGAAAAAA
1 AATTCATGTTTGTCTTATTTAAGGCA-CAAGCTTTGATTTTATCAAAAA-CGGTGCAAG--AAAA
* * * * * * * * * * *
3835438 GCCTTTC-CG-ATGAAACCAAAACATCAATATGATGTATCTTAAGGAGAAGACTATGTTTCTAGT
62 GCTTTTCTTGCA--AAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGAATATATTTATGGT
* *
3835501 GCCTAAACCT-GAAAAGAATGGGGATTAGTATGAG
125 GCCT-AATCTAGAAAAGAATGGGGATTAGTTTGAG
* * * * * * *
3835535 TATTCAAGTTTGTCTTATTTAAGAG-ACAAACTTTGATTCTATCAAAAA-TGTCGAAAAGAAATG
1 AATTCATGTTTGTCTTATTTAAG-GCACAAGCTTTGATTTTATCAAAAACGGT-G-CAAGAAAAG
* * * * * * * * *
3835598 CTTTTGTTACAACACCAAAGCATCAATGTCAT-TATCCTAGTGATG-GGATTGTGTCTT-TGGTT
63 CTTTTCTTGCAAAACCAAAGCATCAATGTCATGTATCCTAATGA-GAAGAATATAT-TTATGGTG
* * * ** * *
3835660 CCCAATCTTGAAAAAAATGGACACT-GTTACGA-
126 CCTAATCTAGAAAAGAATGGGGATTAGTT-TGAG
* * * * * ** * *
3835692 AAATCAATGCTTGTCTTATTTAAGGTATTAA-CTTTGATTTAATGGAATAC-ATGGCAAAGAAAA
1 AATTC-ATGTTTGTCTTATTTAAGGCA-CAAGCTTTGATTTTATCAAAAACGGT-GC-AAGAAAA
* * ** ** * * * * * * * *
3835755 GATTTCCAAGCAAAAGAAAATCATCAATATCATTTATCCTAACGAGGAGAATGTGTTTATAGTGC
62 GCTTTTCTTGCAAAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGAATATATTTATGGTGC
* ** *
3835820 CTAATC-ACAAAATGAATGAAGATCA-TTACT-AG
127 CTAATCTAGAAAA-GAATGGGGATTAGTT--TGAG
* * * * * * *
3835852 AA-TCAATGTTTGTCTTATTTGAGGCACAAACTTAGA-CTTA-CAAAAATTGTGGGGAA-AAAAG
1 AATTC-ATGTTTGTCTTATTTAAGGCACAAGCTTTGATTTTATCAAAAA-CG-GTGCAAGAAAAG
* * * * * ** * *
3835913 AC-TTTCCTGCAAAATCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGCTTATAGAGC
63 -CTTTTCTTGCAAAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGAATATATTTATGGTGC
* * *
3835977 TTAATCCTA-AAAAGAATGGGGATTAGTATAAG
127 CTAAT-CTAGAAAAGAATGGGGATTAGTTTGAG
* * * * * * * *
3836009 TATTCAAGTTTGTCTTATTTTAGAG-ACAAGCTTTAATTCTATCAAAAATGGTGGAAACAAAAGC
1 AATTCATGTTTGTCTTATTTAAG-GCACAAGCTTTGATTTTATCAAAAACGGT-GCAAGAAAAGC
** *
3836073 TTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAA
64 TTTTCTTGCAAAACCAAAGCATCAATGTCATGTATCCTAA
3836113 AGATGAGAAT
Statistics
Matches: 1111, Mismatches: 328, Indels: 186
0.68 0.20 0.11
Matches are distributed among these distances:
155 1 0.00
156 10 0.01
157 132 0.12
158 359 0.32
159 362 0.33
160 117 0.11
161 115 0.10
162 14 0.01
163 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.31
Consensus pattern (158 bp):
AATTCATGTTTGTCTTATTTAAGGCACAAGCTTTGATTTTATCAAAAACGGTGCAAGAAAAGCTT
TTCTTGCAAAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGAATATATTTATGGTGCCTAA
TCTAGAAAAGAATGGGGATTAGTTTGAG
Found at i:3838502 original size:475 final size:471
Alignment explanation
Indices: 3837618--3839026 Score: 1796
Period size: 475 Copynumber: 3.0 Consensus size: 471
3837608 CGATGAAAAG
* ** * * **
3837618 AAAACCTTTTCTTACGACACCAAAGCATCAAGGTCATAG-ATGCTAACA-AAGAAAATGTGTTTT
1 AAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCA-AGTATCCTAA-AGAAGGGAATGTGTTTT
* * * * * * * * * *
3837681 TGGTTCGCAATCTTGAAAATAATGGAGACTATTATGCGAATCGTTGATTGTCTTATTTAAGGGAT
64 TGGATCCCAATCTTGAAAAAAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTATGGTAT
** * * * *
3837746 GAACTTTGATTTTATGGAAAAAAAGGTAGAGAAAAGATTTTCACGGAAAAGAA-AATCATTAGTA
129 GAACTTTGA-TTTAAAGAAAAATAGGTAAAGAAAAGATTTTCAAGGAAAAAAATAATCA--A-TA
* * * *
3837810 TCATTTA-T-CCTACTATCGAGAATGTGTTTATAGTGCCTGATCACAAGATGAATGAAGATCATT
190 TCATTTATTAGCTACTA-GGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATT
* * *
3837873 ACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTT-AGACTTTACAAAAATTGGTGGGAAAG
254 ACTAGAATCCATGTTTGTCTCATTTAAGGCACGAGCTTGA-ACTTTACAAAAATTGGTGGGAAA-
* * *
3837937 AAGCCTTTCATGCGAAACCAAAGCATCAATATGATGTATCCTAATGATAAAGCTATGTTTATGGT
317 AAGCCTTTCTTGTGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAA-CTATGTTTATGGT
* * *
3838002 GCCTAATCC-GAAAAAAATGGGGATTAGTAAGAGTATTTGTGTTTGTCTTGTTTAAGAGATAAAC
381 GCCTAATCCTGAAAAGAATGGGGATTAGTAA-AGTATTTATGTTTGTCTTATTTAAGAGATAAAC
3838066 TTTGATTCTACCAAAAACGGGGGAAAC
445 TTTGATTCTACCAAAAACGGGGGAAAC
* * *
3838093 AAAAGTTTTTCTTGTGACACCAAAGCATCAATGTCAAGTATCCTAAGGAAGGGAATGTGTTTCTG
1 AAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCAAGTATCCTAAAGAAGGGAATGTGTTTTTG
* *
3838158 GATCCCAATCTTGAAAAAAATGGGGACTGTTACGAGAATAGATGCTTGTCTTATTTATGGTATGA
66 GATCCCAATCTTGAAAAAAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTATGGTATGA
*
3838223 ACTTTGATTTAAAGAAAAATAGAGCAAAGAAAAGATTTTCAAGGAAAAAAATAATCAATATCATT
131 ACTTTGATTTAAAGAAAAATAG-GTAAAGAAAAGATTTTCAAGGAAAAAAATAATCAATATCATT
* * * * * *
3838288 TATTAGGTACGAGGAGAATGTGTTTATCGTACCTAATCAAAAAAATGAATGAAGATCATTCCTAG
195 TATTAGCTACTAGGAGAATGTGTTTATAGTGCCTAATC-ACAAAATGAATGAAGATCATTACTAG
* *
3838353 AATCCTTGTTTGTCTCATTTAAGGCACGAGCTTGAAATTTACAAAAATTGGTGGGAAAAAGCCTT
259 AATCCATGTTTGTCTCATTTAAGGCACGAGCTTGAACTTTACAAAAATTGGTGGGAAAAAGCCTT
3838418 TCTTGTGAAACCAAAGCATCAATATGATGTATCCTAATGAGAACACTATGTTTATGGTGCCTAAT
324 TCTTGTGAAACCAAAGCATCAATATGATGTATCCTAATGAGAA-ACTATGTTTATGGTGCCTAAT
* * *
3838483 CCTGAAAAGAATAGGGATTAGTACAAGTATTCATGTTTGACTTATTTAAGAGATAAACTTTGATT
388 CCTGAAAAGAATGGGGATTAGTA-AAGTATTTATGTTTGTCTTATTTAAGAGATAAACTTTGATT
* * *
3838548 CTATCAAAAACGGTGGAAAG
452 CTACCAAAAACGGGGGAAAC
* *
3838568 AAAAGCTTTTCTTGTGACACCAAAGCACCAATGTCATGTATCCTAAAGAAGGGAATGTGTTTTTG
1 AAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCAAGTATCCTAAAGAAGGGAATGTGTTTTTG
* * *
3838633 GGTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTATGGTATGA
66 GATCCCAATCTTGAAAAAAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTATGGTATGA
* * * *
3838698 ACTTTGATTTAAAGAAAAATAGGGTAAAGAAAAGATTTCCATGCAAAAGAAAATAATGAATATCA
131 ACTTTGATTTAAAGAAAAATA-GGTAAAGAAAAGATTTTCAAG-GAAA-AAAATAATCAATATCA
* ** *
3838763 --T-TTAGCCTAATTAGGAGAACATGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC
193 TTTATTAG-CT-ACTAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC
* * *
3838825 TAGAATCCATGTTTGTCTCATTTAAGGCACGAGCTTGGACTGTACAAAACTTGGTGGGAAAAAAG
256 TAGAATCCATGTTTGTCTCATTTAAGGCACGAGCTTGAACTTTACAAAAATTGGTGGG-AAAAAG
* * *
3838890 CCTTTCTTGTGAAACCAAAGCATCACTATGATGTATCCTACTGAGAAGACTATGTTTATGGCGCC
320 CCTTTCTTGTGAAACCAAAGCATCAATATGATGTATCCTAATGAGAA-ACTATGTTTATGGTGCC
* * * * * *
3838955 TAATCTTGAAAAGAATGGGGATTTGTTTAAGT-TTTCATATTTATCTTATTTAAGAGACAAACTT
384 TAATCCTGAAAAGAATGGGGATTAG-TAAAGTATTT-ATGTTTGTCTTATTTAAGAGATAAACTT
3839019 TGATTCTA
447 TGATTCTA
3839027 TTAAAAATAG
Statistics
Matches: 816, Mismatches: 99, Indels: 37
0.86 0.10 0.04
Matches are distributed among these distances:
473 9 0.01
474 111 0.14
475 521 0.64
476 159 0.19
477 16 0.02
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (471 bp):
AAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCAAGTATCCTAAAGAAGGGAATGTGTTTTTG
GATCCCAATCTTGAAAAAAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTATGGTATGA
ACTTTGATTTAAAGAAAAATAGGTAAAGAAAAGATTTTCAAGGAAAAAAATAATCAATATCATTT
ATTAGCTACTAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAA
TCCATGTTTGTCTCATTTAAGGCACGAGCTTGAACTTTACAAAAATTGGTGGGAAAAAGCCTTTC
TTGTGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAACTATGTTTATGGTGCCTAATCCT
GAAAAGAATGGGGATTAGTAAAGTATTTATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTAC
CAAAAACGGGGGAAAC
Found at i:3838701 original size:159 final size:157
Alignment explanation
Indices: 3838044--3838708 Score: 419
Period size: 159 Copynumber: 4.2 Consensus size: 157
3838034 GTATTTGTGT
* * * * *
3838044 TTGTCTTGTTTAAGAG-ATAAACTTTGATTCTACCAAAAACGGGGGAAACAAAAGTTTTTCTTGT
1 TTGTCTTATTTAAG-GTATGAACTTTGATT-TA-CAAAAACGGTGGAAAGAAAAGCTTTTCTTGT
* * * *
3838108 GACACCAAAGCATCAATGTCAAGTATCCTAAGGAAGGGAATGTGTTTCTGG-ATCCCAATCTTGA
63 GACACCAAAGCATCAATATCATGTATCCTAAAGAAGGGAATGTGTTTATGGTA-CCCAATCTTGA
* * * *
3838172 AAAAAATGGGGACTGTTACGAGAATAGATGC
127 AAAGAATGGAGATTGTTACGAGAATCGATGC
* * ** * * * **
3838203 TTGTCTTATTTATGGTATGAACTTTGATTTAAAGAAAAATAGAGCAAAGAAAAGATTTTCAAG-G
1 TTGTCTTATTTAAGGTATGAACTTTGATTT--ACAAAAACGGTGGAAAGAAAAGCTTTTCTTGTG
** ** * * * * **
3838267 A-AAAAAATAATCAATATCATTTAT--T-AGGTACGAGGAGAATGTGTTTATCGTACCTAATCAA
64 ACACCAAAGCATCAATATCATGTATCCTAAAG-A--AGG-GAATGTGTTTATGGTACCCAATCTT
* * ** * * ** *
3838328 AAAAATGAATGAAGATCATTCCTAGAATCCTTGT
125 GAAAA-GAATGGAGATTGTTACGAGAATCGATGC
* * * * * * *
3838362 TTGTCTCATTTAAGGCACGAGC-TTGAAATTTACAAAAATTGGTGG-GA-AAAAGCCTTTCTTGT
1 TTGTCTTATTTAAGGTATGAACTTTG--ATTTACAAAAA-CGGTGGAAAGAAAAGCTTTTCTTGT
* * * * * * * *
3838424 GAAACCAAAGCATCAATATGATGTATCCTAATGAGAA--CACTATGTTTATGGTGCCTAATCCTG
63 GACACCAAAGCATCAATATCATGTATCCTAA--AGAAGGGAATGTGTTTATGGTACCCAATCTTG
* * *
3838487 AAAAGAATAGG-GATTAG-TACAAGTATTC-ATGT
126 AAAAGAAT-GGAGATT-GTTACGAG-AATCGATGC
* *
3838519 TTGACTTATTTAAGAG-ATAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGT
1 TTGTCTTATTTAAG-GTATGAACTTTGATT-TA-CAAAAACGGTGGAAAGAAAAGCTTTTCTTGT
* * *
3838583 GACACCAAAGCACCAATGTCATGTATCCTAAAGAAGGGAATGTGTTTTTGGGT-CCCAATCTTGA
63 GACACCAAAGCATCAATATCATGTATCCTAAAGAAGGGAATGTGTTTAT-GGTACCCAATCTTGA
3838647 AAAGAATGGAGATTGTTACGAGAATCGATGC
127 AAAGAATGGAGATTGTTACGAGAATCGATGC
*
3838678 TTGTCTTATTTATGGTATGAACTTTGATTTA
1 TTGTCTTATTTAAGGTATGAACTTTGATTTA
3838709 AAGAAAAATA
Statistics
Matches: 374, Mismatches: 97, Indels: 71
0.69 0.18 0.13
Matches are distributed among these distances:
154 3 0.01
155 2 0.01
156 3 0.01
157 69 0.18
158 84 0.22
159 200 0.53
160 8 0.02
161 2 0.01
162 1 0.00
163 1 0.00
164 1 0.00
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (157 bp):
TTGTCTTATTTAAGGTATGAACTTTGATTTACAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGAC
ACCAAAGCATCAATATCATGTATCCTAAAGAAGGGAATGTGTTTATGGTACCCAATCTTGAAAAG
AATGGAGATTGTTACGAGAATCGATGC
Found at i:3841916 original size:476 final size:475
Alignment explanation
Indices: 3841213--3842279 Score: 1401
Period size: 476 Copynumber: 2.2 Consensus size: 475
3841203 GGGATGAACA
* **
3841213 TTGATTTTATCAAAAAC-GATGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCACA
1 TTGATTATATCAAAAACAG-TGAAAA-AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATG
* * ** * * **
3841277 TATGCTAACG-AAGAGAATGTGTTTTTGGTTTGCAATCTTGAAAATAATGTAGACTATTACGCGA
64 TATCCTAAAGAAAG-GAATGTGTTTTTGGTTCCCAATCTTGAAAAAAATGGAGACTATTACAAGA
* * * *
3841341 ATCGTTGCTTATCTTATTTAAGGGATGAAGTTTGATTTTATAGAAAATAGGGCAGAGAAAAGATT
128 ATCGATGCTTATCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGCAAAGAAAAGATT
* * * ** * *
3841406 TCCATGCAAAAGAAAATCATCAGTATCATTTATCCTAATGTCGAGAATGTGTTTATAGTGCCTGA
193 TCCAAGCAAAAGAAAATAATCAATATCATTTATCCTAATAACGAGAATGTGTTTATAGTACCTAA
*
3841471 TCACAAAATGAATGAAGATCATTACTGGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAC
258 TCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAC
* * *
3841536 TTTACAAAAATTGGTGGGAAAAAAGCTTTTCCTACAAAACCAAAACATCAATATGATGTATGCTA
323 TTTACAAAAATTGGTGGGAAAAAAGCCTCTCCTACAAAACCAAAACATCAATATGATGTATCCTA
** * *
3841601 ATGAGAAAACTAT-ATTTTCGATGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTCGTG
388 ATGAGAAAACTATGATGAT-GATGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATG
* *
3841665 TTTGTCTTGTTTAAGAGACAAACT
452 TTTATCTTCTTTAAGAGACAAACT
* *
3841689 TTGATTATATAAAAAACAGTGAAAACAAAAGCTTTTCTTGCGACCCCAAAGCATCAATGTCATGT
1 TTGATTATATCAAAAACAGTGAAAA-AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGT
* * *
3841754 ATCCTAAAGAAAGGAATGTGTCTTTT-GATCCCAATCTTTAAAAAAATGGAGACTGTTACAAGAA
65 ATCCTAAAGAAAGGAATGTGT-TTTTGGTTCCCAATCTTGAAAAAAATGGAGACTATTACAAGAA
* * *
3841818 TCGATGCTTGTCTTATTTAAGGTATGAACTTTGA-TTTAAAGAAAATTAGGGTAAAGAAAAGATT
129 TCGATGCTTATCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAA-TAGGGCAAAGAAAAGATT
*
3841882 TCCAAGCAAAAGAAAATAATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTACCTAA
193 TCCAAGCAAAAGAAAATAATCAATATCATTTATCCTAATAACGAGAATGTGTTTATAGTACCTAA
* * * * * *
3841947 TCACAAAATGAATGAAGATTATTTCTAGAATCGATGTTTGTCTTATTTGGGGCATGAACTTAGAC
258 TCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAC
* ** * * *
3842012 TTTACAAAAATTGGTGGGAAAAAATCCTCTCCTAGGAAACTAAAGCATCAATGTGATGTATCCTA
323 TTTACAAAAATTGGTGGGAAAAAAGCCTCTCCTACAAAACCAAAACATCAATATGATGTATCCTA
* * * * *
3842077 ATTAGAAGACTATGCTGATGGTGCCTAATCCTGAAAATAATGGGGATTAGTATGAGTATTCATGT
388 ATGAGAAAACTATGATGATGATGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGT
*
3842142 TTATCTTCTTTTAGAGACAAACT
453 TTATCTTCTTTAAGAGACAAACT
* * ** *
3842165 TTGATTCTATCAAAAATAGTGAAAAAAAA-CTTTTCTTGCGATGCCAAA-CACCAATGTCATGTA
1 TTGATTATATCAAAAACAGTGAAAAAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTA
* * * **
3842228 TCATAATGAAGGGAATGTGTTTTTGGTTCCCAGCCTTGAAAAAAATGGAGAC
66 TCCTAAAGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAAAATGGAGAC
3842280 ATTCTGTGTG
Statistics
Matches: 512, Mismatches: 73, Indels: 15
0.85 0.12 0.03
Matches are distributed among these distances:
472 4 0.01
473 54 0.11
474 17 0.03
475 14 0.03
476 413 0.81
477 10 0.02
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (475 bp):
TTGATTATATCAAAAACAGTGAAAAAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTA
TCCTAAAGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAAAATGGAGACTATTACAAGAATC
GATGCTTATCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGCAAAGAAAAGATTTCC
AAGCAAAAGAAAATAATCAATATCATTTATCCTAATAACGAGAATGTGTTTATAGTACCTAATCA
CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT
ACAAAAATTGGTGGGAAAAAAGCCTCTCCTACAAAACCAAAACATCAATATGATGTATCCTAATG
AGAAAACTATGATGATGATGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTA
TCTTCTTTAAGAGACAAACT
Found at i:3843668 original size:476 final size:465
Alignment explanation
Indices: 3842535--3844024 Score: 1758
Period size: 469 Copynumber: 3.2 Consensus size: 465
3842525 GCGTAGAGGG
3842535 TTGTCTTATTTAAAGGATAAACTTTGATTTTAA-GAAAATAGGGCAAGGAAAAGATTTCCAAGCA
1 TTGTCTTATTT-AAGGATAAACTTTGATTTTAAGGAAAATAGGGCAA-GAAAAGATTTCCAAGCA
* * * * * *
3842599 AAAGAAAATTATCAATATCATTAATCCTAAAGAGAAGAATGTGCTTATAGTGACTAATCACAAAA
64 AAAGAAAATAATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAA
* * * * * * * *
3842664 TGACTGAAGATCATTCCTAAAATCCATGTCTGTCTCATTTGAGGCTCGAACTTAGACTTTACAAA
129 TGAATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTAAGGCACGAGCTTAGACTTTACAAA
* *
3842729 AATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCTTAATGAGATG
194 AATTGGTGGGAAAAAAGCCTTTCTTGTAAAACCAAAGCATCAATATGATGTATCTTAATGAGAAG
* * *
3842794 ACTATGTTTATGGTGCCTAATCTTGCAAAAAATGGGGATTAGTTTGAGTATTTATGTTTTTCTTA
259 ACTATGTTTATGGTGCCTAATCCTG-AAAAAATGGGGATTAGTTTGAGTATTCATGTTTATCTTA
3842859 TTTAAGAGACAAACTTTGATTCTATTAAAAATGGTGGTAAAAAATCCATTTCTTGCAAAGCCAAA
323 TTTAAGAGACAAACTTTGATTCTATTAAAAATGGTGGTAAAAAAT-CATTTCTTGCAAAGCCAAA
* * *
3842924 ACATCAATGTCAAGTATCTCCATAAGGATTTTTGGTGCCTAAACACGAAAACAATGTAGACTATT
387 ACACCAATGTCAAGTATCTCAATAAGGATTTTTGGTGCCCAAACACGAAAACAATGTAGACTATT
* *
3842989 ACTGGAATCTATAT
452 ACTAGAATCTATAC
* * * * * *
3843003 TTATCTTATTCAAGGTATGAGCTTTGATTTAAAGAAAAATAGGGCAAAGAAAAGATTTCCAAGCA
1 TTGTCTTATTTAAGG-ATAAACTTTGATTTTAAGGAAAATAGGGC-AAGAAAAGATTTCCAAGCA
* * *
3843068 AAAAAAAATAATCAATGTCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCTTAATCACAAAA
64 AAAGAAAATAATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAA
*
3843133 TGAATGAAGATCATTACTAGAATCCATGTTTGTCTCT-TTTAAGGCACGAGCTTAGACTTTATAA
129 TGAATGAAGATCATTACTAGAATCCATGTTTGTCT-TATTTAAGGCACGAGCTTAGACTTTACAA
* * * * * *
3843197 AAATTGGTGGGAAAAAAGCTTTTCCTGTGAAACCAAAGCATCAATATGATGTAACCTAATTAGAA
193 AAATTGGTGGGAAAAAAGCCTTTCTTGTAAAACCAAAGCATCAATATGATGTATCTTAATGAGAA
* **
3843262 GACTATGTTTATGGTGCCTAATCCTGAAAATAATGGGGATTAGTATGAGTATTCCCGTTTATCTT
258 GACTATGTTTATGGTGCCTAATCCTGAAAA-AATGGGGATTAGTTTGAGTATTCATGTTTATCTT
* * * * * * * *
3843327 CTTTTAA-AGACAAACTTTGATTATATCAAAGATGGTGGAAAGAAAATCTTTTCTTGTGACA-CC
322 -ATTTAAGAGACAAACTTTGATTCTATTAAAAATGGTGGTAA-AAAATCATTTCTTG-CAAAGCC
* * * *
3843390 AAAACACCAATGTCATGTATC-CTAATGAAGGGAATATCTTTTTGGTTCCCAATC-CTGAAAAGA
384 AAAACACCAATGTCAAGTATCTC-AAT-AA-GG---A--TTTTTGGTGCCCAAACAC-GAAAACA
* *
3843453 AT-TGAGTCTATTA-TAAGAAT-TGATGC
440 ATGT-AGACTATTACT-AGAATCT-ATAC
* * *
3843479 TTGTCTTATTTAAGGAATAAACTTTGATTTTAAGGAAAATCA-AGTAGAGAAAAGATTTTCAAGC
1 TTGTCTTATTTAAGG-ATAAACTTTGATTTTAAGGAAAAT-AGGGCA-AGAAAAGATTTCCAAGC
** * * * * * *
3843543 AATTGAAAATCATTAACATCATTTATCCTAATGAGGGGAATATGTTTATAGTGCCTAATCAGAAA
63 AAAAGAAAATAATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAA
3843608 ATGAATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTAAGGCACGAGCTTAGACTTTACAA
128 ATGAATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTAAGGCACGAGCTTAGACTTTACAA
*
3843673 AAATTGGTGGGAAAAAAGCCTTTCTTGTAAAACCAAAGCGTCAATATGATGTATCTTAATGAGAA
193 AAATTGGTGGGAAAAAAGCCTTTCTTGTAAAACCAAAGCATCAATATGATGTATCTTAATGAGAA
* * * *
3843738 AACTATCTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTTTGAGTATTCATGTTTGTCTT
258 GACTATGTTTATGGTGCCTAATCCTGAAAA-AATGGGGATTAGTTTGAGTATTCATGTTTATCTT
* * * * *
3843803 ATTTAAGAGACAAACTTTGATTCTATTAAAAATGGTGGTAAAAAATCCCTTTATTGTAGAGCTAA
322 ATTTAAGAGACAAACTTTGATTCTATTAAAAATGGTGGTAAAAAAT-CATTTCTTGCAAAGCCAA
* * * * * * * * *
3843868 AACATCAATGTCATGTCTCTCTATAAGGATTTTTGGTGCCCAAACCCAAAAAGAAAGCAGACTAT
386 AACACCAATGTCAAGTATCTCAATAAGGATTTTTGGTGCCCAAACACGAAAACAATGTAGACTAT
* * *
3843933 TACTGGAATCTACAT
451 TACTAGAATCTATAC
* * * * * * * *
3843948 TTATCTTATTCAAGGTATGAACTTTAATTTAAAGAAAAATAAGGCAAAGAAAAGATTTTCAAGCA
1 TTGTCTTATTTAAGG-ATAAACTTTGATTTTAAGGAAAATAGGGC-AAGAAAAGATTTCCAAGCA
3844013 AAAGAAAATAAT
64 AAAGAAAATAAT
3844025 TAGTGTGAAA
Statistics
Matches: 860, Mismatches: 129, Indels: 65
0.82 0.12 0.06
Matches are distributed among these distances:
467 4 0.00
468 29 0.03
469 404 0.47
470 20 0.02
471 3 0.00
474 3 0.00
475 20 0.02
476 375 0.44
477 2 0.00
ACGTcount: A:0.38, C:0.13, G:0.17, T:0.32
Consensus pattern (465 bp):
TTGTCTTATTTAAGGATAAACTTTGATTTTAAGGAAAATAGGGCAAGAAAAGATTTCCAAGCAAA
AGAAAATAATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG
AATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTAAGGCACGAGCTTAGACTTTACAAAAA
TTGGTGGGAAAAAAGCCTTTCTTGTAAAACCAAAGCATCAATATGATGTATCTTAATGAGAAGAC
TATGTTTATGGTGCCTAATCCTGAAAAAATGGGGATTAGTTTGAGTATTCATGTTTATCTTATTT
AAGAGACAAACTTTGATTCTATTAAAAATGGTGGTAAAAAATCATTTCTTGCAAAGCCAAAACAC
CAATGTCAAGTATCTCAATAAGGATTTTTGGTGCCCAAACACGAAAACAATGTAGACTATTACTA
GAATCTATAC
Found at i:3844923 original size:476 final size:476
Alignment explanation
Indices: 3844022--3845237 Score: 1657
Period size: 476 Copynumber: 2.6 Consensus size: 476
3844012 AAAAGAAAAT
* * * * * * *
3844022 AATTAGTGTGAAAAAAGCCTTTCTTGCGAAACTAAAGCATCAATATGACGTATGCTAATGAGAAG
1 AATTGGTGGGAAAAAACCCTTTCTTGGGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAG
* * * * *
3844087 ACTATATTTATGGTGCCTAATCCTA-AAAAATATGGGAATTAGTATGAGCATTCATGTTTGACTT
66 ACTATGTTTATGGTGCCTAATCC-AGAAAAAAATGGGGATTAGTATGAGTATTCATGTTTGTCTT
* * * *
3844151 ATTTTCGAGATAAACTTTGACTCTATCAAAAACAGTGGAAACAAAAGCTTTTCTTGCGACACCAA
130 ATTTTAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAACAAAAGCTTTTCTTGCGACACCAA
* * *
3844216 AGCATCAAAGTTATGTATCCTAAAGAAGGGAATGTGTTTTTGGATCCCAATCTTGAAAAAAATGG
195 AGCATCAATGTCATGTATCCTAAAGAAGGAAATGTGTTTTTGGATCCCAATCTTGAAAAAAATGG
* * * * * *
3844281 AGATTGTTACAAGAATCGATACTTGTCTTATTTAAGATATGAACTTTGATTTAAAGAGAATTGGG
260 AGACTATTACAAGAATCGATACTTGTCTTATTTAAGATATGAAATTTGATTTAAAGAAAAATAGG
* * * **
3844346 GCAAAGAAAAGATTTCCAAGCAAAAGGAAATTATCAGTATCATTTATCATAATGTCAAGAATGTG
325 GAAAAGAAAAGATTTCCAAGCAAAAGAAAATTATCAATATCATTTATCATAATAACAAGAATGTG
* * * *
3844411 TTTATATTAACTAATCACAAAATGAATGAAGATCATTCCTAAAATCCATGTTTGTCTCATTTGAG
390 TTTATAGTAACTAATCACAAAAGGAATGAAGATCATTACTAAAATCCATGTTTATCTCATTTGAG
3844476 GCACGAACTTAGACTTTACAAA
455 GCACGAACTTAGACTTTACAAA
* *
3844498 AATTGGTGGGAAAAAACCCTTTCTTGGGAAACCAAAGGATCAATATAATGTATCCTAATGAGGAA
1 AATTGGTGGGAAAAAACCCTTTCTTGGGAAACCAAAGCATCAATATGATGTATCCTAATGA-GAA
* * * **
3844563 -ACTATGTTTATGGTACCTAATCCAGAAAAAAATGGGGATTGGTATGTGTATTCACATTTGTCTT
65 GACTATGTTTATGGTGCCTAATCCAGAAAAAAATGGGGATTAGTATGAGTATTCATGTTTGTCTT
* * * ** * *
3844627 GTTTAAGGGACAAACTTTGATTCTATCAAAAACGGCAGAAACAAAAGCTTTTCTTGTGACACTAA
130 ATTTTAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAACAAAAGCTTTTCTTGCGACACCAA
* *
3844692 AGCATCAATGTCATGTATCTTAAAGAAGGAAATGTGTTTTTGGATCCTAATCTTGAAAAAAATGG
195 AGCATCAATGTCATGTATCCTAAAGAAGGAAATGTGTTTTTGGATCCCAATCTTGAAAAAAATGG
* *
3844757 AGACTATTACAAGAATCGATACTTGTCTTATTTAAGGTATGAAATTTGTTTTAAAGAAAAATAGG
260 AGACTATTACAAGAATCGATACTTGTCTTATTTAAGATATGAAATTTGATTTAAAGAAAAATAGG
* * **
3844822 GAAAAGAAAAGATTTCCAAGCAAAAGAAAA-TATTCAATATCTTTTATCCTAATAAGGAGAATGT
325 GAAAAGAAAAGATTTCCAAGCAAAAGAAAATTA-TCAATATCATTTATCATAATAACAAGAATGT
* *
3844886 GTTTATAGTACCTAATCACAAAAGGAATGAAGATCATTACTAGAATCCATGTTTATCTCATTTGA
389 GTTTATAGTAACTAATCACAAAAGGAATGAAGATCATTACTAAAATCCATGTTTATCTCATTTGA
* *
3844951 GGCATGAACTTAGACTTTGCAAA
454 GGCACGAACTTAGACTTTACAAA
* * * * * * *
3844974 AACTGGTGGGAAAAAATCCTCTCCT-GCAAAGCCAAAGCATCAATATGATGTATCCTATTTAGAA
1 AATTGGTGGGAAAAAACCCTTTCTTGGGAAA-CCAAAGCATCAATATGATGTATCCTAATGAGAA
** * * *
3845038 GACTATGTTTATGGTGCCTAATCTTGAAAATAATGGGGATTAGTATAAGTATTAATGTTTGTCTT
65 GACTATGTTTATGGTGCCTAATCCAGAAAAAAATGGGGATTAGTATGAGTATTCATGTTTGTCTT
* * *
3845103 CTTTTAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAAAAAAAACTTTTCTTGCGACACCA
130 ATTTTAGAGACAAACTTTGATTCTATCAAAAACGGTGG-AAACAAAAGCTTTTCTTGCGACACCA
* * *
3845168 AAGCACCAATGTCATGTATCCTAATGAAGGAAATGTGTTTTTGGTTCCCAATCTTGAAAAAAATG
194 AAGCATCAATGTCATGTATCCTAAAGAAGGAAATGTGTTTTTGGATCCCAATCTTGAAAAAAATG
3845233 GAGAC
259 GAGAC
3845238 AGTCTGCGTG
Statistics
Matches: 641, Mismatches: 93, Indels: 11
0.86 0.12 0.01
Matches are distributed among these distances:
475 10 0.02
476 541 0.84
477 90 0.14
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.31
Consensus pattern (476 bp):
AATTGGTGGGAAAAAACCCTTTCTTGGGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAG
ACTATGTTTATGGTGCCTAATCCAGAAAAAAATGGGGATTAGTATGAGTATTCATGTTTGTCTTA
TTTTAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAACAAAAGCTTTTCTTGCGACACCAAA
GCATCAATGTCATGTATCCTAAAGAAGGAAATGTGTTTTTGGATCCCAATCTTGAAAAAAATGGA
GACTATTACAAGAATCGATACTTGTCTTATTTAAGATATGAAATTTGATTTAAAGAAAAATAGGG
AAAAGAAAAGATTTCCAAGCAAAAGAAAATTATCAATATCATTTATCATAATAACAAGAATGTGT
TTATAGTAACTAATCACAAAAGGAATGAAGATCATTACTAAAATCCATGTTTATCTCATTTGAGG
CACGAACTTAGACTTTACAAA
Found at i:3846571 original size:475 final size:476
Alignment explanation
Indices: 3845543--3853977 Score: 6753
Period size: 475 Copynumber: 17.6 Consensus size: 476
3845533 AGGGAAAAAC
* * * * * * *
3845543 TTGTATTATTTAAGAGACAAGCTTTGATTTTACCAAAAATGGCA-GAAAAAAAAGCTTTTCTTGC
1 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGG-AGGAAAGAAAAGCTTTTCTTGA
* * * * *
3845607 GACACCAAAGCATCAATGTCATGCATCCTGATGAAGGGACTGTGTTTTTGG-TTTCTAATCTTGA
65 GACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG-TTTTGGCTTCCCAATCTTGA
* *
3845671 AAAGAATGGATG-CTGTTACGAGAATCGATGCTTGTCTTATTTAAAGGATGAACTTTGATTTTAA
129 AAAGAATAGA-GACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAA
* * * * *
3845735 GGAAAATAGGGTAAAGAAAATATTTTCATGTAAAAGAAAATCATCAATATCATTTATCCTAATGA
193 GGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA
* * * * * *
3845800 GGAGATTGTGCTTATAGCGTCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGG
258 GGTGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGT
*
3845865 CTCATTTGATGCACGAACTTAGACTTTACAAAAATTG-TGGGGAACAAA-GCCTTTCTTGCGAAA
323 CTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGAT-GGGAA-AAATGCCTTTCTTGCGAAA
* *
3845928 CCAAAGCATCAATATCATGTATCCTAATCAGAAGATTATGTTTATGGTGCCTAATCTTGAAAAGA
386 CCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGA
*
3845993 ATGGGGATTAGTATGACTATTCATGT
451 ATGGGGATTAGTATGAGTATTCATGT
* ** * *
3846019 TTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGTTGCAAAGAAAAGCTTTT-TTGCG
1 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGAGGAAAGAAAAGCTTTTCTTGAG
* * *
3846083 ACTCCAAAGCATCAATGTCATGTATCCTAATGAAGGGACTGTGTTTTTGG-TTCCTAATCTTGAA
66 ACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG-TTTTGGCTTCCCAATCTTGAA
* * * *
3846147 AAGAATAGGGACTGTTATGAGAATCGAAGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAGGG
130 AAGAATAGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGG
* * *
3846212 AAAATAAGGTAAAGAAAAGATTTCCATGCAAAAGGAAATCATCAATATCATTTATCTTAATGAGG
195 AAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGG
** * * * *
3846277 AAAATGTGTTTATAGTGCCTAATAACAAAATGAATCAAGATCATTTCTAGAGTCCATGTTTGTCT
260 TGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCT
* * ** * * *
3846342 TATTTAAGGCATAAACTTAGATTTTACAAAAATTGATGAGAAAAATGCCCTTCTTGCGAAACCAA
325 CATTTGAGGCACGAACTTAGACTTTACAAAAATTGATGGGAAAAATGCCTTTCTTGCGAAACCAA
* * * * *
3846407 AGCATCAATGTCATGTATCATAACGAGAAGACTATATTTACGGTGCCTAATCTTGAAAAGAAT-G
390 AGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGG
* **
3846471 GAATTAGTATGAGTGCTCATGT
455 GGATTAGTATGAGTATTCATGT
* * *
3846493 TTATCTTATTTAAGAGACAAACTTTGATTCTATCAAAATCAGAGGAAAGAAAAGCTTTTCTTGAG
1 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGAGGAAAGAAAAGCTTTTCTTGAG
* * * * * * * *
3846558 ACACCACAGCATCACTGTCATGTATCCTAATGAAGGAAATGTATTTTTGG-TCCCCAGTCATCAA
66 ACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGT-GTTTTGGCTTCCCAATCTTGAA
* * *
3846622 AAGAATAGAGACTGTTACTAGAATCGATGCTTGTCTTCTTTAAGGCATGAACTTTGATTTTAAGG
130 AAGAATAGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGG
* * * * * * * **
3846687 AAAATTAGGTAATGAATACATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTTACAAGG
195 AAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGG
* ** * * * *
3846752 TGAATGTGTTTATAGTTCCTAATCACAAAATGTGTGAAGATCATTATTAAAATCTATGTTTTTCT
260 TGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCT
* *
3846817 CATTTGAGGCAC--A---A-AC-TT------ATTGGTGGGAAAAATGCTTTTCTTGCGAAACCAA
325 CATTTGAGGCACGAACTTAGACTTTACAAAAATTGATGGGAAAAATGCCTTTCTTGCGAAACCAA
* * * * * * *
3846869 AACATCAATATTATGTACCCTAATAAGAAGACGATTTTTATGGTGCCTAATCTTG-AAAGAATAG
390 AGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGG
* * * *
3846933 GAATTAGAATGAGTATCCAAGT
455 GGATTAGTATGAGTATTCATGT
* * * *
3846955 TTGTCTTATTTAAGAGACAAACTTTGATAT-TATAAAAAACGGTGGAAATAAAAGCTTTTCTTGT
1 TTGTCTTATTTAAGAGACAAACTTTGAT-TCTATCAAAAACGGAGGAAAGAAAAGCTTTTCTTGA
* * *
3847019 GACACCAAAGCTTCAATGTCATGTATCCTAGA-AAAGGGAATCTGTGTTTGG-TTCCCAATCTTG
65 GACACCAAAGCATCAATGTCATGTATCCTA-ATGAAGGGAATGTGT-TTTGGCTTCCCAATCTTG
* * *
3847082 AAAAAAATAGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTGAA
128 AAAAGAATAGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAA
* * * *
3847147 CGAAAATAGAGGC-AAGAAAAGATTTTCACT-CAAAAGAAAATCATCAAAATTATTTATCCTAAT
193 GGAAAATA-AGGCAAAGAAAAGATTTCCA-TGCAAAAGAAAATCATCAATATCATTTATCCTAAT
** * * *
3847210 GAGGAAAATGTGTTTATAGTGTCTAATCACAAAATGAGTGAAGATCATTAGTAGAATCCATGTTT
256 GAGGTGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
* * * * *
3847275 GTCTGATTAGAGGCATGAACATAGACTTTACAAAAATTGATGGGAAAAATGCCATTCTTGCGAAA
321 GTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGATGGGAAAAATGCCTTTCTTGCGAAA
* * * * ** * *
3847340 -TAAAACATCAAAATCATGTATCCTAATAAGAAG---ATGATAAATGCTGCCTACTCTTGAAAAG
386 CCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATG-TTTATGGTGCCTAATCTTGAAAAG
3847401 AATGGGGATTAGTATGAGTATTCATGT
450 AATGGGGATTAGTATGAGTATTCATGT
* * *
3847428 TTCTCTTATCTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCA
1 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGAGGAAAGAAAAGCTTTTCTTG-A
* * * * * *
3847493 -ACATCAATGCTTCAATGTCACGTATCCTAATGAAGGGAATATGTGTTTGG-TTTCCAATCTTGA
65 GACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGT-TTTGGCTTCCCAATCTTGA
* * * ** *
3847556 AAA-AATGGA-ATCTGTTATGAGAATCAATGCTTACCTTATTTAAGGGATGAACTTTGATATTAA
129 AAAGAATAGAGA-CTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAA
* * * *
3847619 TGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCGTTTATCCTAGTGA
193 GGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA
** * * * * *
3847684 GAAGAATGTCTTTATAGTGGCTAATCACAAAATGAGTCAAGATCATTAGTAGAATCCATGTTTGT
258 GGTGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGT
* * * * * *
3847749 CTCATTTGAAGCACGAACTTAGACTTTGC-AAAATTGGTAGGAAAAATGCCTTTCTTGCAAAATG
323 CTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGATGGGAAAAATGCCTTTCTTGCGAAA-C
* * * * * * *
3847813 GAAA-CATCAATATCGTGTATGCTAAAGAGACGCCTATGTTTATGGTG-CTAATCCTGAAAAGAA
387 CAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAA
*
3847876 TGGGGATTAGTTTGAGTATTCATGT
452 TGGGGATTAGTATGAGTATTCATGT
* * * * *
3847901 TTGTTTTATTTAAAAGACAAACTTTGATTTTATAAAAAACGGAGGAAAGAAAAGCTTTTCCT-AC
1 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGAGGAAAGAAAAGCTTTTCTTGA-
* * * * *
3847965 GCCACCAAAGCATTAATATCTTGTATCCTAATGAGGGGAATGTGTTTTTGG-TTCCCAATCTTGA
65 GACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG-TTTTGGCTTCCCAATCTTGA
* ** * * * * *
3848029 AAAGAATGGAGACAATTATGAGAATCAACGCTTATCTTATTTAAGGTATGAACTTTGATTTTAAG
129 AAAGAATAGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAG
** * * * *
3848094 GAAAATTTGGCAATGAAAAGATTTCCATGCAAGAGAAAATCATCAATATCATTTA-CCGTTACGA
194 GAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCC-TAATGA
* * * * ** * *
3848158 GGCGAATGTCTTTAGAGTGCCTAATCACGAAATGGGTGAAGATCATTAGTAGAATCCATATTTGT
258 GGTGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGT
* * * * ** *
3848223 CTCATTTGTGGCACGAACCTAAACTTTGCAAAAATTGGA-GGGAAAAA-GCCTTTCTTAAGAAAT
323 CTCATTTGAGGCACGAACTTAGACTTTACAAAAATT-GATGGGAAAAATGCCTTTCTTGCGAAAC
* * * * * * *
3848286 CAAAGCATCAATATAATGAATCCTAATGAAAAGACTATATTTATGGTGCTTAATCCTAAAAAGAA
387 CAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAA
*
3848351 TAGGGATTAGTATGAGTATTCATGT
452 TGGGGATTAGTATGAGTATTCATGT
* * * * * ** * *
3848376 TTATCTTATTTAAGAGACAAACTTTGATTCTATCATAATCGGTGGAAAG----CCTAATCCTGAA
1 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGAGGAAAGAAAAGCTTTTCTTGAG
* ** * * * * * * * * **** *
3848437 AAAGGAATAAGGATTAGTATGAGTATTAGTGTTTGACTTATTATAGAG-ATAAACTTTGATTCTA
66 ACA-CCA-AAGCATCA--AT--G--TCA-TGTAT-CCTAATGA-AGGGAATGTGTTTTG--GCT-
* * ** * * * * * * *
3848501 TCACAAACAAGGAAAAGAA-A-AG-CT-TTTCTTGCGACACCAAAGCATAAATGTGATGTATCCT
117 TCCCAATC-TTGAAAAGAATAGAGACTGTTAC--GAGA-ATCGATGC-T---TGT-CT-TAT-TT
* * * * * ***** * ** ** ** * * * *
3848562 AATGAAGGGAA-TGTG-TTTT-TGGTTCCCAA-TC-TTGAAAA-AAATGGAGGCTATTACGAGAA
171 AAGGGA-TGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGC-A-AAAGAAAA
*** * * * * * ** *
3848621 TCAATGTGTGTC--TTAT-TTAA-G-GTATGAACTTTAATTT-TAAG-G-AAAAT-AGGACAAA-
233 TC-ATCAATATCATTTATCCTAATGAG-GTGAA-TGT-GTTTAT-AGTGCCTAATCA-CA-AAAT
* ** * * * * *
3848676 GAA--AAGATTTTCATGCAAAAGAAAATCATCAATATTATTTATCCTAATGAGG-A-GAATGTGT
291 GAATGAAGA---TCAT-TACTAG--AATC--C-ATGTT-TGTCTCAT-TTGAGGCACGAA-----
* * * * * * * * **
3848737 TTATAGTGCCTTATAACAAAATGAAGATCTTACT-AGAATCTATATTTGTCTCAT-TTGAGGCAC
340 CT-TA--GACTT-T-AC--AA--AA-AT-TGA-TGGGAA---A-A-ATGCCT-TTCTTGCGAAAC
* * * * ** * *** * ** * * *** * * * *
3848800 GAACTTAGACTTAAAAAAAAT-TGGTGGGAA--A-AAAACCCTTTTTACGAAACCAAAGCATCAA
387 CAA---AG-CATCAATATCATGT-ATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAA
* * * * *
3848861 TATG-AT--GTATCCTAATAAGAAG-ACT-ATGTT
447 -AAGAATGGGGAT--TAGTATG-AGTATTCATG-T
* ** * * * *** *** *
3848891 TATGGTGCCTAATCCCGAAAAGA-ATAGGGATTAGTATGAGTATTCATGTTTGC-CTTATTTAAG
1 T-T-GT--CTTAT--TTAAGAGACA-A---ACT--T-T--G-ATTC---TAT-CAAAAACGGAGG
* * * * **** * * * * *
3848954 AAACAAACG-TTGATTCTATCAGAAACGGTGGAAATAAAAGCCTTTCTTACG-ATACCAAAGCAT
46 AAAGAAAAGCTT--TTCT-TGAGACACCAAAG-CAT-CAA---TGTC--ATGTAT-CC-TA--AT
* **** * * ******** *
3849017 CAATTTCATGTATCCTAATAAAAAGAATGTGTTTTGACTTTCCAGTCTTGAAAAGTATAGAGACT
97 GAAGGGAATGTGT--T-TTGGCTTCCC---------A------A-TCTTGAAAAGAATAGAGACT
* * * * *
3849082 GTTAC-AGGAATCGATG-TTGGTCTTATTTATGGTATGAACATTGATTTTATGGAAAAGAAGG-A
143 GTTACGA-GAATCGATGCTT-GTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCA
** * * ** **
3849144 GAAGAAAAGACATCCGTGCAAAAGAAAATCATCAATATCATTTATCCTAAAGAGGAAAATGCATT
206 -AAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGTGAATGTGTT
* * ** * * * * *
3849209 TATTGTACCTAATCACAAAATGAGGGAAGATTAGTAGTAGAATCCATGTTTCTCTCATCTGAGGC
270 TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGC
* * * * *
3849274 ACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCATTCTTGTGAGACCAAAACATCAATA
335 ACGAACTTAGACTTTACAAAAATTGATGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATA
* * * * *
3849339 TCATGTATCCCAATGATAAGAC-AGTGCTTATGGTGCCTAACCTT-AAAA-ACATTGGGATTAGT
400 TCATGTATCCTAATGAGAAGACTA-TGTTTATGGTGCCTAATCTTGAAAAGA-ATGGGGATTAGT
* * *
3849401 ATAAGTATTCTTAT
463 ATGAGTATTCATGT
* * ** *
3849415 TTGTCTAATTTAAGAGATAAACTTCAATTCTATCAAAAACGGTGGAAA-AAATAGCTTTTCTT-A
1 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGAGGAAAGAAA-AGCTTTTCTTGA
* * * * * * *
3849478 CGACAACAAAACATCAATATCATGTATCTTAATGAAGGGAATGTATTTCGACTTCCCAATCTTGA
65 -GACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGA
* * * *
3849543 AAAGAATGGAGACTGCTACAAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAG
129 AAAGAATAGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAG
*
3849608 GAAAAT-AGCGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTTATGA
194 GAAAATAAG-GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA
* * * *
3849672 GGTGAATGTGTTTATAATACCTAATCACAAAATGAATGAAGATCATCACTAG--TTCATGTTTGT
258 GGTGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGT
* * * * * * * *
3849735 CTTATTTGAGGCACAAACTTAGACTTTA-ACAAAATTGGTGGGAAAAAAGCCATTCTTGTGGAGC
323 CTCATTTGAGGCACGAACTTAGACTTTACA-AAAATTGATGGGAAAAATGCCTTTCTTGCGAAAC
* * ** * ** * *
3849799 CAAAGCATCAATATGATGAATCCTAAAAAGACGACTACATTTATGGTGCCTAATCCTAAAAAGAA
387 CAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAA
* * * **
3849864 TAGAGG-CTAGTATAAGTATTTTTGT
452 T-GGGGATTAGTATGAGTATTCATGT
* * * *
3849889 TTGTCTTATTTAAGAAACAAACTTTGATTCTATCAAAAAC-GATGGAAAGAAAAGCATTTATTGT
1 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGA-GGAAAGAAAAGCTTTTCTTGA
* * ** * *
3849953 GACAACAAAGCATGAATGTCATGTATCCTAATGAAATGAGTGCGTTTTGGCTTCCCAATCTTGAA
65 GACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAA
* * * * * *
3850018 AAGAATAGAGACTGCTGCGAGAATCGATACGTGTCTTATTTAAAGGATGAACTTTGATTTAAAGG
130 AAGAATAGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGG
* * * * *
3850083 AAAATAGGGCAAAGAAATGATTTCCAAGCAGAAGAAAATCATCAATATCATTTATCCTAATGAGC
195 AAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGG
* * * *
3850148 TGAATGTGTTTATAGTCCCTAATCACAAAATGAATGAAGATGATTACTAG-TTCCATATTTGTCT
260 TGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCT
* * *
3850212 CATTTGAGACACGAACTTAGACTTTACAAAAATT-AGTGGGAAAAAAGCCTTTCTTGCGAAATCA
325 CATTTGAGGCACGAACTTAGACTTTACAAAAATTGA-TGGGAAAAATGCCTTTCTTGCGAAACCA
* *
3850276 AAGCATCAATATGATGAATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTT-AAAAGAAT
389 AAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT-CTTGAAAAGAAT
*
3850340 AGGGATTAGTATGAGTATTCATGT
453 GGGGATTAGTATGAGTATTCATGT
* *
3850364 TTGTCTTATTTAAGAAACAAACTTTGATTCTATCAAAAAC-GATGGAAAGAAAAGCTTTTCTTGT
1 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGA-GGAAAGAAAAGCTTTTCTTGA
* * * *
3850428 GACACCGAAGCATGAATGTCATGTATCCTATTGAAGGGAATGAGTTTTGGCTTCCCAATCTTGAA
65 GACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAA
* * * * * * * *
3850493 AAGAATGGAGACTGTTATGGGAATCGATGCTTGTTTTATTTAAAGGATTAACATTGATTTAAAGG
130 AAGAATAGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGG
* * * *
3850558 AAAATAAGGCAAGGAAAAGATTTCCATGTAAAA-AAAATCATCAATATCATTTATCGTAAAGAGG
195 AAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGG
* * * * *
3850622 TGAATCTGTTTATAGTGCCTCATCACAAAATGAATGAAGATCATTACTAG-TTTCGTGTTTGTCT
260 TGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCT
* * * * * *
3850686 CATTTGAGGGAC--ACATATAGACTTTACAAAAATTGGA-GTGAAAAAAGCTTTTCCTGCAAAAC
325 CATTTGAGGCACGAAC-T-TAGACTTTACAAAAATT-GATGGGAAAAATGCCTTTCTTGCGAAAC
* * * * * ** * *
3850748 CAAAGCATCAATATGATGAATCATAATGAGAAGACTATGCTTGTTATGCCAAATCTTCAAAAGAA
387 CAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAA
* *
3850813 TGGGGATTAGT-TGAGAATCCATGT
452 TGGGGATTAGTATGAGTATTCATGT
* * * *
3850837 TTGTCTTATTTAAGAAACAAACTTTGATTCTATCAAAAACAGTGGAATGAAAAGCTTTTCTTGCA
1 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGAGGAAAGAAAAGCTTTTCTTG-A
* * * * ** * * * *
3850902 -ACACTAAAGCATGAATGCCATATATGTTAAAGAGGGGAGTGTGTTTCGGCTTCCCAATCTTGAA
65 GACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAA
** * * *
3850966 AAGAATAGAGACTGCAACTAGAGTCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGG
130 AAGAATAGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGG
* **
3851031 AAAATAGGGCAAA-AAAAGATTTTAATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGG
195 AAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGG
* *
3851095 TGAATGTGTTTATAGTGCCTAATCACAAACTGAATGAAGATCATTACTAG-TTCCAATGTTTGTC
260 TGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC-ATGTTTGTC
* * *** * * *
3851159 TCATTCGAGGCGCGAACTTAGACTCGGCAAAAGTTGGTGGGAAAAA-GCCTTTCTTGTGAAACCA
324 TCATTTGAGGCACGAACTTAGACTTTACAAAAATTGATGGGAAAAATGCCTTTCTTGCGAAACCA
* * * * * * * * *
3851223 AAGCATTAATATGATGAACCCTAATAAGAAGACTATGTTTATGGTCCCTTATCCTGAAAAGAAGG
389 AAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATG
*
3851288 GGGATTAGTATGAGTATTCATAT
454 GGGATTAGTATGAGTATTCATGT
* * *
3851311 TTGTCTTATTTAAGAAAC-AACTTTGATTCTATCAAAAACGGTGGAAGGAAAAGCTTTTCTT-AC
1 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGAGGAAAGAAAAGCTTTTCTTGA-
* * * * ** * * *
3851374 TACACCAAAGCATGAATGTTAGGTATTTTAATGAAGGGAGTGTGTTTCGGCTTCCAAATCTTGAA
65 GACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAA
* * * ** * * * *
3851439 AGGAATAGAGACTGCTATGAGAATTAATGCTTGTCTTTTTTAAGGTATGGACTTTAATTTTAAGG
130 AAGAATAGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGG
* * * * * *
3851504 AAAATAAGACACAGAAAAGATTTTCATGTAACAGAAAATCATCAATATCATTTATCCTAATAAGG
195 AAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGG
*
3851569 TGAATGTGTTTATAGTGCCTAATCACAAAACGAATGAAGATCATTACTAGAATCCATGTTTGTCT
260 TGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCT
* * * * *
3851634 AATTTGAGGCACGAACTTAGAAC-TTAGAAAAATT-AGTGTGAAAAATGCCTCTT-TTTCAAAAC
325 CATTTGAGGCACGAACTTAG-ACTTTACAAAAATTGA-TGGGAAAAATGCCT-TTCTTGCGAAAC
* * * * * * * *
3851696 CAAAGCTTCAATATGATGAATTCTAGTGAGAAGACTACGTTTATGGTGCCTAATCCTAAAAAGAA
387 CAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAA
* * *
3851761 TAGGGATTAATAGGAGTATT-ATGT
452 TGGGGATTAGTATGAGTATTCATGT
* * * *
3851785 TTGCCTTATTTAAGAAACAAACATTGATTCTATCAAAAATGGTA-GAAAGAAAAGCTTTTCTTGC
1 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGG-AGGAAAGAAAAGCTTTTCTTG-
* * *
3851849 A-ACACGAAAGCATCAAT-TCCATGTATCC-AGTTGAAGTGAATGTGTTTTGGCTTCCCAAT-TT
64 AGACACCAAAGCATCAATGT-CATGTATCCTA-ATGAAGGGAATGTGTTTTGGCTTCCCAATCTT
* ** * * *
3851910 GCAAAAAAAT-GAAGACTACTACAAGAATCGATGCTTGTCTTATTTAAGGGTTGAACTTCGATTT
127 G-AAAAGAATAG-AGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTT
* * * *
3851974 AAAGGAAAATAAGGCAAAGAAAAGAATTCTACGCAAAAGAAAATCATCAATATCATTTATCCTAA
190 TAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAA
** * *
3852039 TGAGGTGAATGTGTTTATAGCACCTAATCACAAAATGACTGAAGATCATTACTAGAGTCCATGTT
255 TGAGGTGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTT
* * * **
3852104 TGTCTTATTTGATGCACGAACTTAGACTTCA-AAAAATT-AGTGGGAAAAA-GCCTTTCTTGTTA
320 TGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGA-TGGGAAAAATGCCTTTCTTGCGA
** * * * * * *
3852166 GGCCAAAACTTCAATATCGTGTATCCTAATGAGAAGCCAATGTTTATGGTGCCTAACCTTGAAAA
384 AACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTG-AAA
* * * * *
3852231 AAAATGAGCAATAGTATGAGTATTCTTGT
448 AGAATGGGGATTAGTATGAGTATTCATGT
* * ** * * *
3852260 TTATCTAATTTAAGAGACAAACTTCAATTCTATCAAAAACGGTGGAAACAAAAGCTTTTCTTGTG
1 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGAGGAAAGAAAAGCTTTTCTTGAG
* ** ** * * *
3852325 ACAACAAAGCATGGATGTCATGTATCCTCTTAAAGGGAATATGTTTTGGCTTCCTAATCTTGAAA
66 ACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAA
* * * *
3852390 AGAGTAAAGACTGTTACAAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGA
131 AGAATAGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGA
* ** ** * * *
3852455 AAATAGGGCAAAGAAAAGATTTTGACACAAAAGAAAATCATAAAAATCATTTATCCTAATGAGTT
196 AAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGT
* * * * *
3852520 GAATGTGTTTATAGTGCCTAATCAAAAAAGGAATGAAGATCATTTCTAG-TTCCATGTTTGTCTA
261 GAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTC
* * ** **
3852584 ATTTGAGACACGAATTTAGACATTT-CAAAAATT-AGTTTGAAAAATGCCTTTCTTTTGAAACCA
326 ATTTGAGGCACGAACTTAGAC-TTTACAAAAATTGA-TGGGAAAAATGCCTTTCTTGCGAAACCA
* * * * *
3852647 AAGCTTTAATATGATGAATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTT-AAAAGAAT
389 AAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT-CTTGAAAAGAAT
* *
3852711 GGGGATTATTAGGAGTATT-ATGT
453 GGGGATTAGTATGAGTATTCATGT
* * * * * *
3852734 TTGCCTTATTTAAGAAACAAACATTAATTCTATCAAAAATGGTGGAAAGGAAAA-CTTTTCTTGC
1 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGAGGAAA-GAAAAGCTTTTCTTG-
* * * **
3852798 A-ACACCAAAACATCAATTTCATGTACCCTCTTGAAGGGAATGTGTTTTGGCTTCCCAATC-TGT
64 AGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTG-
* * * * * * * *
3852861 AAAATAAAAGAGATTGTTACGGGAATCGATGCTTGTCTTATTTAAGGTATGAGCATTGATTTTAT
128 AAAAGAATAGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAA
* * *** * *
3852926 GGAAAATAAGGCGAAGAAAAAATTTTTTTGCAAAAGAAAATCATCAATATCATTTATCTTAAAGA
193 GGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA
* * * * * * *
3852991 GGGGAATGTGTTTATTGTACCTAATCACAAAATGAA-GAAAGAACAATAGTAGAATCTATGTTTG
258 GGTGAATGTGTTTATAGTGCCTAATCACAAAATGAATG-AAGATCATTACTAGAATCCATGTTTG
* * **
3853055 TCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGATGGGAAAAATGCCATTCTTACGAGTC
322 TCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGATGGGAAAAATGCCTTTCTTGCGAAAC
* * * * *
3853120 CAAAACATCAATATCGTGTATCCTAATGAGAAGA-TGATGTTTATGCTGCCTAAGCTTGAAAAAA
387 CAAAGCATCAATATCATGTATCCTAATGAGAAGACT-ATGTTTATGGTGCCTAATCTTGAAAAGA
**
3853184 AT-GGGATTAGTATGAGTATTTTTGT
451 ATGGGGATTAGTATGAGTATTCATGT
** * ** * * ** *
3853209 TTGTCAAATTTAAGAGATAAACTTCAATTCTATAAAAAAC-AATCTAAAGAAAAGCTTTTCTTGT
1 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGA-GGAAAGAAAAGCTTTTCTTGA
* * * * *
3853273 GAGACCAAAGCATCAATGTCATGTATCTTAATGAAGGGAACGTGTTTTAGCATCCCAATCTTGAA
65 GACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAA
* * * * * * *
3853338 AAGATTGGAGACTGCTACAAGAATCAATGCTTGTCTTATATAAGGGATGAACTTTGATTTAAAGG
130 AAGAATAGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGG
*
3853403 AAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGG
195 AAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGG
* * * * *
3853468 TGAATGTGTTTATGGCGCCTAATCACAAAATGAATGAAGATCATTACTAG-TTCAATGTTTATCT
260 TGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTC-
* * * * *
3853532 TC-TTTGAGGCACAAACTTAGACTTTACAAAAATTGGTTGGAAAAAAGCCTTTCTTGGGAAACCA
324 TCATTTGAGGCACGAACTTAGACTTTACAAAAATTGATGGGAAAAATGCCTTTCTTGCGAAACCA
* *
3853596 AAGCATCAATATGATGAATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATG
389 AAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATG
*
3853661 GGGATTAGCATGAGTATTTC-TGT
454 GGGATTAGTATGAGTA-TTCATGT
* * * *
3853684 TTGTCTTATTTAAGAAATAAACTTTGATTCTATCAAAAAC-GATGGAAAGAAAAGCGTTTCTTGT
1 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGA-GGAAAGAAAAGCTTTTCTTGA
* * ** * ** * * *
3853748 GACAACAAAGCATGAATGTTTTGTGTCCTTTTGAAAGGAGTGTGTTTTGGCTTCCCAATCTTCAA
65 GACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAA
* * * * * * * *
3853813 AACAATAGAGACTGCTACGAGAATCAATGCTTATCTTATTTAAAGGATGAACTTTAACTTAAAGG
130 AAGAATAGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGG
* * * * * * *
3853878 AATATAGGGCAAAGAAAAGATTTCAATGCAAACGTAAATCATCAAAATCATTTATCCTAATGAGA
195 AAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGG
* *
3853943 TGAATGTATTTATAGT-CCTTAATCACAAACTGAAT
260 TGAATGTGTTTATAGTGCC-TAATCACAAAATGAAT
3853978 CATCAAAAAC
Statistics
Matches: 6369, Mismatches: 1274, Indels: 633
0.77 0.15 0.08
Matches are distributed among these distances:
461 8 0.00
462 368 0.06
463 6 0.00
464 1 0.00
467 1 0.00
468 4 0.00
469 3 0.00
470 1 0.00
471 45 0.01
472 247 0.04
473 970 0.15
474 1529 0.24
475 2470 0.39
476 130 0.02
477 4 0.00
479 1 0.00
480 8 0.00
481 9 0.00
482 4 0.00
483 10 0.00
484 14 0.00
485 17 0.00
486 17 0.00
487 18 0.00
488 9 0.00
489 12 0.00
490 7 0.00
491 10 0.00
492 12 0.00
493 6 0.00
494 14 0.00
496 1 0.00
497 3 0.00
498 4 0.00
499 3 0.00
500 3 0.00
501 1 0.00
502 3 0.00
503 3 0.00
504 6 0.00
505 8 0.00
506 10 0.00
507 5 0.00
508 4 0.00
509 4 0.00
511 1 0.00
512 1 0.00
513 4 0.00
514 13 0.00
515 31 0.00
516 6 0.00
517 3 0.00
518 17 0.00
519 5 0.00
520 6 0.00
521 6 0.00
522 12 0.00
523 6 0.00
524 15 0.00
525 17 0.00
526 15 0.00
527 2 0.00
528 1 0.00
529 1 0.00
530 5 0.00
531 4 0.00
532 2 0.00
533 8 0.00
534 1 0.00
535 2 0.00
536 4 0.00
537 5 0.00
538 7 0.00
539 17 0.00
540 1 0.00
541 3 0.00
542 2 0.00
545 5 0.00
546 6 0.00
547 10 0.00
548 8 0.00
549 7 0.00
550 16 0.00
551 9 0.00
552 18 0.00
553 16 0.00
554 17 0.00
555 8 0.00
556 8 0.00
557 2 0.00
558 3 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (476 bp):
TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGAGGAAAGAAAAGCTTTTCTTGAG
ACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAA
AGAATAGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGA
AAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGT
GAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTC
ATTTGAGGCACGAACTTAGACTTTACAAAAATTGATGGGAAAAATGCCTTTCTTGCGAAACCAAA
GCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGG
GATTAGTATGAGTATTCATGT
Found at i:3846603 original size:158 final size:157
Alignment explanation
Indices: 3845910--3848035 Score: 515
Period size: 158 Copynumber: 13.5 Consensus size: 157
3845900 TGTGGGGAAC
* * *
3845910 AAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATCA-GAAGAT-TATGTTTAT
1 AAAGCTTTTCTTGCGAAACCAAAGCATCAATGTCATGTATCCTAATGAGGAA-ATGTA--TTTAT
* * * *
3845973 GGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACA
63 GGTGCCTAATCTTGAAAAGAATAGGAATTAGTATGAGTACTCATGTTTGTCTTATTTAAGAGACA
* * *
3846038 AACTTTGATTCTAT-AAAAAACGTTGCAAAGA
128 AACTTTGATTCTATCAAAATA-G-AGGAAAGA
** * * * *
3846069 AAAGCTTTT-TTGCGACTCCAAAGCATCAATGTCATGTATCCTAATGAAGGGACTGTGTTTTTGG
1 AAAGCTTTTCTTGCGAAACCAAAGCATCAATGTCATGTATCCTAATG-AGGAAATGTATTTATGG
* * * * * * * **
3846133 TTCCTAATCTTGAAAAGAATAGGGACT-GTTATGAG-AATCGAAGCTTGTCTTATTTAAGGGATG
65 TGCCTAATCTTGAAAAGAATAGGAATTAG-TATGAGTACTC-ATGTTTGTCTTATTTAAGAGACA
* **
3846196 AACTTTGATTTTAGGGAAAATA-AGGTAAAGA
128 AACTTTGATTCTA-TCAAAATAGAGG-AAAGA
* * * * ** * * * * * *
3846227 AAAGATTTCCATGCAAAAGGAAATCATCAATATCATTTATCTTAATGAGGAAAATGTGTTTATAG
1 AAAGCTTTTCTTGCGAAACCAAAGCATCAATGTCATGTATCCTAATGAGG-AAATGTATTTATGG
*** * **
3846292 TGCCTAAT-AACAAAATGAATCAAGATCATTTCTA-GAGT-C-CATGTTTGTCTTATTTAAG-GC
65 TGCCTAATCTTGAAAA-GAAT-AGGA--ATTAGTATGAGTACTCATGTTTGTCTTATTTAAGAG-
* * * * *
3846352 ATAAACTTAGATTTTA-CAAAAATTGATGAGAA-A
125 ACAAACTTTGATTCTATC-AAAATAGAGGA-AAGA
* ** * * * *
3846385 AATGCCCTTCTTGCGAAACCAAAGCATCAATGTCATGTATCATAACGA-GAAGACTATATTTACG
1 AAAGCTTTTCTTGCGAAACCAAAGCATCAATGTCATGTATCCTAATGAGGAA-A-TGTATTTATG
* *
3846449 GTGCCTAATCTTGAAAAGAAT-GGAATTAGTATGAGTGCTCATGTTTATCTTATTTAAGAGACAA
64 GTGCCTAATCTTGAAAAGAATAGGAATTAGTATGAGTACTCATGTTTGTCTTATTTAAGAGACAA
3846513 ACTTTGATTCTATCAAAATCAGAGGAAAGA
129 ACTTTGATTCTATCAAAAT-AGAGGAAAGA
* * * * *
3846543 AAAGCTTTTCTTGAGACACCACAGCATCACTGTCATGTATCCTAATGAAGGAAATGTATTTTTGG
1 AAAGCTTTTCTTGCGAAACCAAAGCATCAATGTCATGTATCCTAATG-AGGAAATGTATTTATGG
* * * * * * * * *
3846608 TCCCCAGTCATCAAAAGAATA-GAGACT-GTTACT-AG-AATCGATGCTTGTCTTCTTTAAG-G-
65 TGCCTAATCTTGAAAAGAATAGGA-ATTAG-TA-TGAGTACTC-ATGTTTGTCTTATTTAAGAGA
* ** * *
3846667 CATGAACTTTGATTTTAAGGAAAATTAG-GTAATGA
126 CA--AACTTTGATTCT-ATCAAAA-TAGAGGAAAGA
* * * * ** * * * * ** * * *
3846702 ATA-CATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTTACAAGGTGAATGTGTTTATA
1 AAAGC-TTTTCTTGCGAAACCAAAGCATCAATGTCATGTATCCTAATGAGG-AAATGTATTTATG
* ** ** * * * * * * *
3846766 GTTCCTAATC-ACAAAATGTGTGAAGATCATTATTA-AAAT-CT-ATGTTTTTCTCATTTGAG-G
64 GTGCCTAATCTTGAAAA-GAAT-AGGA--ATTAGTATGAGTACTCATGTTTGTCTTATTTAAGAG
**
3846826 CACAAAC-TT-A---T-T---GGT-G-GG-AA-A
125 -ACAAACTTTGATTCTATCAAAATAGAGGAAAGA
* * * * * * * *
3846847 AATGCTTTTCTTGCGAAACCAAAACATCAATATTATGTACCCTAAT-AAGAAGACGATTTTTATG
1 AAAGCTTTTCTTGCGAAACCAAAGCATCAATGTCATGTATCCTAATGAGGAA-ATG-TATTTATG
* *
3846911 GTGCCTAATCTTG-AAAGAATAGGAATTAGAATGAGTA-TCCAAGTTTGTCTTATTTAAGAGACA
64 GTGCCTAATCTTGAAAAGAATAGGAATTAGTATGAGTACT-CATGTTTGTCTTATTTAAGAGACA
* * *
3846974 AACTTTGATAT-TAT-AAAAAACGGTGGAAATA
128 AACTTTGAT-TCTATCAAAATA--GAGGAAAGA
* * * ** * * *
3847005 AAAGCTTTTCTTGTGACACCAAAGCTTCAATGTCATGTATCCTAGAAAAGGGAATCTGTGTT-TG
1 AAAGCTTTTCTTGCGAAACCAAAGCATCAATGTCATGTATCCTA-ATGAGGAAATGTAT-TTATG
* * * * * * * * * *
3847069 GTTCCCAATCTTGAAAAAAATA-GAGACTATTACGAG-AATCGATGCTTGTCTTATTTAAGGGAT
64 GTGCCTAATCTTGAAAAGAATAGGA-ATTAGTATGAGTACTC-ATGTTTGTCTTATTTAAGAGAC
* * *
3847132 GAACTTTGATT-TGAACGAAAATAGAGGCAAGA
127 AAACTTTGATTCT-ATC-AAAATAGAGGAAAGA
* * * ** * ** * * * *
3847164 AAAGATTTTCACT-CAAAAGAAAATCATCAAAATTATTTATCCTAATGAGGAAAATGTGTTTATA
1 AAAGCTTTTC-TTGCGAAACCAAAGCATCAATGTCATGTATCCTAATGAGG-AAATGTATTTATG
* ** * * * *
3847228 GTGTCTAATC-ACAAAATGAGTGAAGATCATTAGTA-GAAT-C-CATGTTTGTCTGA-TT-AGAG
64 GTGCCTAATCTTGAAAA-GAAT-AGGA--ATTAGTATGAGTACTCATGTTTGTCTTATTTAAGAG
* * * * *
3847287 GCATGAACATAGACTT-TA-CAAAAATTGATGGGAA-A
125 ACA--AACTTTGA-TTCTATC-AAAATAGA-GGAAAGA
* ** * * ** * ** *
3847322 AATGCCATTCTTGCGAAA-TAAAACATCAAAATCATGTATCCTAAT-AAGAAGATG-ATAAATGC
1 AAAGCTTTTCTTGCGAAACCAAAGCATCAATGTCATGTATCCTAATGAGGAA-ATGTATTTATGG
* * * * * *
3847384 TGCCTACTCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTCTCTTATCTAAGAGACAAA
65 TGCCTAATCTTGAAAAGAATAGGAATTAGTATGAGTACTCATGTTTGTCTTATTTAAGAGACAAA
*
3847449 CTTTGATTCTATCAAAA-ACGGTGGAAAGA
130 CTTTGATTCTATCAAAATA--GAGGAAAGA
* * * * *
3847478 AAAGCTTTTCTTGC-AACATCAATGCTTCAATGTCACGTATCCTAATGAAGGGAATATGT-GTT-
1 AAAGCTTTTCTTGCGAA-ACCAAAGCATCAATGTCATGTATCCTAATG-A-GGAA-ATGTATTTA
* * * **
3847540 TGGTTTCC-AATCTTGAAAA-AAT-GGAATCT-GTTATGAG-AATCAATGCTTACCTTATTTAAG
62 TGG-TGCCTAATCTTGAAAAGAATAGGAAT-TAG-TATGAGTACTC-ATGTTTGTCTTATTTAAG
* ** *
3847600 GGATGAACTTTGATAT-TAATGAAAATAG-GGCAAAGA
123 AGACAAACTTTGAT-TCT-ATCAAAATAGAGG-AAAGA
* * * * ** * * * * * * * *
3847636 AAAGATTTCCATGCAAAAGAAAATCATCAATATCGTTTATCCTAGTGAGAAGAATGTCTTTATAG
1 AAAGCTTTTCTTGCGAAACCAAAGCATCAATGTCATGTATCCTAATGAGGA-AATGTATTTATGG
* ** * * * * *
3847701 TGGCTAATC-ACAAAATGAGTCAAGATCATTAGTA-GAAT-C-CATGTTTGTCTCATTTGAAG-C
65 TGCCTAATCTTGAAAA-GAAT-AGGA--ATTAGTATGAGTACTCATGTTTGTCTTATTT-AAGAG
* * * *
3847761 ACGAACTTAGACTT-T-GCAAAATTGGTAGG-AA-A
125 ACAAACTTTGA-TTCTATCAAAA-TAG-AGGAAAGA
* * * ** * * * * **
3847793 AATGCCTTTCTTGCAAAATGGAAA-CATCAATATCGTGTATGCTAAAGAGACGCCTATG--TTTA
1 AAAGCTTTTCTTGCGAAA-CCAAAGCATCAATGTCATGTATCCTAATGAG--G-AAATGTATTTA
* * * * * * *
3847855 TGGTG-CTAATCCTGAAAAGAATGGGGATTAGTTTGAGTATTCATGTTTGTTTTATTTAAAAGAC
62 TGGTGCCTAATCTTGAAAAGAATAGGAATTAGTATGAGTACTCATGTTTGTCTTATTTAAGAGAC
* *
3847919 AAACTTTGATTTTAT-AAAAAACGGAGGAAAGA
127 AAACTTTGATTCTATCAAAATA--GAGGAAAGA
* * ** * * * * * *
3847951 AAAGCTTTTCCTACGCCACCAAAGCATTAATATCTTGTATCCTAATGAGGGGAATGTGTTTTTGG
1 AAAGCTTTTCTTGCGAAACCAAAGCATCAATGTCATGTATCCTAATGA-GGAAATGTATTTATGG
* *
3848016 TTCCCAATCTTGAAAAGAAT
65 TGCCTAATCTTGAAAAGAAT
3848036 GGAGACAATT
Statistics
Matches: 1395, Mismatches: 410, Indels: 324
0.66 0.19 0.15
Matches are distributed among these distances:
141 5 0.00
142 3 0.00
143 4 0.00
144 26 0.02
145 53 0.04
146 3 0.00
147 2 0.00
148 1 0.00
149 1 0.00
150 1 0.00
152 7 0.01
153 9 0.01
154 12 0.01
155 54 0.04
156 81 0.06
157 181 0.13
158 478 0.34
159 383 0.27
160 49 0.04
161 23 0.02
162 16 0.01
163 3 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (157 bp):
AAAGCTTTTCTTGCGAAACCAAAGCATCAATGTCATGTATCCTAATGAGGAAATGTATTTATGGT
GCCTAATCTTGAAAAGAATAGGAATTAGTATGAGTACTCATGTTTGTCTTATTTAAGAGACAAAC
TTTGATTCTATCAAAATAGAGGAAAGA
Found at i:3850334 original size:949 final size:948
Alignment explanation
Indices: 3848447--3853977 Score: 6133
Period size: 949 Copynumber: 5.8 Consensus size: 948
3848437 AAAGGAATAA
** * * ** *
3848447 GGATTAGTATGAGTATTAGTGTTTGACTTA-TTATAGAGATAAACTTTGATTCTATCACAAAC-A
1 GGATTAGTATGAGTATTCTTGTTTGTCTAATTTA-AGAGATAAACTTCAATTCTATCAAAAACGA
* * *
3848510 AGGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATAAATGTGATGTATCCTAATGAAGGGAATG
65 TGG-AAAGAAAAGCTTTTCTTGCGACACCAAAGCATGAATGTCATGTATCCTAATGAAGGGAATG
* * * ** *
3848575 TGTTTTTGG-TTCCCAATCTTGAAAAAAATGGAGGCTATTACGAGAATCAATG-TGTGTCTTATT
129 T-ATTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGCTACAAGAATCAATGCT-TGTCTTATT
* * * *
3848638 TAAGGTATGAACTTTAATTTTAAGGAAAATAGGACAAAGAAAAGATTTTCATGCAAAAGAAAATC
192 TAAGGGATGAACTTTGATTTAAAGGAAAATAGG-CAAAGAAAAGATTTCCATGCAAAAGAAAATC
* * * *
3848703 ATCAATATTATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTTAT-A-ACAA--AATGAAGA
256 ATCAATATCATTTATCCTAATGAGGTGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGA
* * * * * *
3848764 TC-TTACTAGAATCTATATTTGTCTCATTTGAGGCACGAACTTAGACTTAAAAAAAATTGGTGGG
321 TCATTACTAGATTC-ATGTTTGTCTAATTTGAGGCACAAACTTAGACTTTAACAAAATTGGTGGG
* ** *
3848828 AAAAAAACCCTTT-TTACGAAACCAAAGCATCAATATGATGTATCCTAATAAGAAGACTATGTTT
385 -AAAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATGATGAATCCTAATAAGAAGACTATGTTT
** * *
3848892 ATGGTGCCTAATCCCGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGCCTTATTTAAGAAA
449 ATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTTATGTTTGCCTTATTTAAGAAA
* * * * * * * * * *
3848957 CAAACGTTGATTCTATCAGAAACGGTGGAAATAAAAGCCTTTCTTACGATACCAAAGCATCAATT
514 CAAACTTTGATTCTATCAAAAACGATGGAAAGAAAAGCTTTTCTTGCAACAACAAAGCATCAATG
* * * * * * *
3849022 TCATGTATCCTAATAAAAAGAATGTGTTTTGACTTTCCAGTCTTGAAAAGTATAGAGACTGTTAC
579 TCATGTATCCTAATGAAAGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATAGAGACTGCTAC
* * * * *
3849087 -AGGAATCGATG-TTGGTCTTATTT-ATGGTATGAACATTGATTTTATGGAAAAGAAGG-AGAAG
644 GA-GAATCGATGCTT-GTCTTATTTAAAGG-ATGAACTTTGATTTAAAGGAAAATAAGGCA-AAG
** ** * ** ** *
3849148 AAAAGACATCCGTGCAAAAGAAAATCATCAATATCATTTATCCTAAAGAGGAAAATGCATTTATT
705 AAAAGATTTCCAAGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGTGAATGTGTTTATA
* ** * * * * *
3849213 GTACCTAATCACAAAATGAGGGAAGATTAGTAGTAGAATCCATGTTTCTCTCATCTGAGGCACGA
770 GTCCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
* * * * *
3849278 ACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCATTCTTGTGAGACCAAAACATCAATATCAT
835 ACTTAGACTTTACAAAAATTAGTGGGAAAAAAGCCTTTCTTGTGAAACCAAAACATCAATATGAT
* * * *
3849343 GTATCCCAATGATAAGAC-AGTGCTTATGGTGCCTAACCTTAAAAACATTG
900 GTATCCTAATGAGAAGACTA-TGTTTATGGTGCCTAACCTTAAAAA-AATG
* * *
3849393 GGATTAGTATAAGTATTCTTATTTGTCTAATTTAAGAGATAAACTTCAATTCTATCAAAAACGGT
1 GGATTAGTATGAGTATTCTTGTTTGTCTAATTTAAGAGATAAACTTCAATTCTATCAAAAACGAT
* * * * * *
3849458 GGAAA-AAATAGCTTTTCTTACGACAACAAAACATCAATATCATGTATCTTAATGAAGGGAATGT
66 GGAAAGAAA-AGCTTTTCTTGCGACACCAAAGCATGAATGTCATGTATCCTAATGAAGGGAATGT
* * *
3849522 ATTTCGACTTCCCAATCTTGAAAAGAATGGAGACTGCTACAAGAATCGATGCTTGTCTTATTTAA
130 ATTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGCTACAAGAATCAATGCTTGTCTTATTTAA
3849587 GGGATGAACTTTGATTTAAAGGAAAATAGCGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATC
195 GGGATGAACTTTGATTTAAAGGAAAATAG-GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATC
* * *
3849652 AATATCATTTATCCTTATGAGGTGAATGTGTTTATAATACCTAATCACAAAATGAATGAAGATCA
259 AATATCATTTATCCTAATGAGGTGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
* *
3849717 TCACTAG-TTCATGTTTGTCTTATTTGAGGCACAAACTTAGACTTTAACAAAATTGGTGGGAAAA
324 TTACTAGATTCATGTTTGTCTAATTTGAGGCACAAACTTAGACTTTAACAAAATTGGTGGGAAAA
* * * * * **
3849781 AAGCCATTCTTGTGGAGCCAAAGCATCAATATGATGAATCCTAAAAAGACGACTACATTTATGGT
389 AAGCCTTTCTTGTGAAACCAAAGCATCAATATGATGAATCCTAATAAGAAGACTATGTTTATGGT
* * * * *
3849846 GCCTAATCCTAAAAAGAATAGAGG-CTAGTATAAGTATTTTTGTTTGTCTTATTTAAGAAACAAA
454 GCCTAATCCTAAAAAGAAT-GGGGATTAGTATGAGTATTTATGTTTGCCTTATTTAAGAAACAAA
* * ** *
3849910 CTTTGATTCTATCAAAAACGATGGAAAGAAAAGCATTTATTGTGACAACAAAGCATGAATGTCAT
518 CTTTGATTCTATCAAAAACGATGGAAAGAAAAGCTTTTCTTGCAACAACAAAGCATCAATGTCAT
* * * *
3849975 GTATCCTAATGAAATGAGTGCGTTTTGGCTTCCCAATCTTGAAAAGAATAGAGACTGCTGCGAGA
583 GTATCCTAATGAAAGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATAGAGACTGCTACGAGA
* * * *
3850040 ATCGATACGTGTCTTATTTAAAGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAATGATT
648 ATCGATGCTTGTCTTATTTAAAGGATGAACTTTGATTTAAAGGAAAATAAGGCAAAGAAAAGATT
* *
3850105 TCCAAGCAGAAGAAAATCATCAATATCATTTATCCTAATGAGCTGAATGTGTTTATAGTCCCTAA
713 TCCAAGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGTGAATGTGTTTATAGTCCCTAA
* * * *
3850170 TCACAAAATGAATGAAGATGATTACTAG-TTCCATATTTGTCTCATTTGAGACACGAACTTAGAC
778 TCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAC
* * * *
3850234 TTTACAAAAATTAGTGGGAAAAAAGCCTTTCTTGCGAAATCAAAGCATCAATATGATGAATCCTA
843 TTTACAAAAATTAGTGGGAAAAAAGCCTTTCTTGTGAAACCAAAACATCAATATGATGTATCCTA
*
3850299 ATGAGAAGACTATGTTTATGGTGCCTAATCCTTAAAAGAATAG
908 ATGAGAAGACTATGTTTATGGTGCCTAA-CCTTAAAAAAAT-G
* * * * **
3850342 GGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAAACAAACTTTGATTCTATCAAAAACGAT
1 GGATTAGTATGAGTATTCTTGTTTGTCTAATTTAAGAGATAAACTTCAATTCTATCAAAAACGAT
* * *
3850407 GGAAAGAAAAGCTTTTCTTGTGACACCGAAGCATGAATGTCATGTATCCTATTGAAGGGAATG-A
66 GGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATGAATGTCATGTATCCTAATGAAGGGAATGTA
* *** * *
3850471 GTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTATGGGAATCGATGCTTGTTTTATTTAA
131 -TTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGCTACAAGAATCAATGCTTGTCTTATTTAA
* * * * *
3850536 AGGATTAACATTGATTTAAAGGAAAATAAGGCAAGGAAAAGATTTCCATGTAAAA-AAAATCATC
195 GGGATGAACTTTGATTTAAAGGAAAAT-AGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATC
* * * *
3850600 AATATCATTTATCGTAAAGAGGTGAATCTGTTTATAGTGCCTCATCACAAAATGAATGAAGATCA
259 AATATCATTTATCCTAATGAGGTGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
* * * * * * *
3850665 TTACTAGTTTCGTGTTTGTCTCATTTGAGGGACACA-TATAGACTTT-ACAAAAATTGGAGTGAA
324 TTACTAGATTCATGTTTGTCTAATTTGAGGCACAAACT-TAGACTTTAAC-AAAATTGGTGGGAA
* * ** * * * * *
3850728 AAAAGCTTTTCCTGCAAAACCAAAGCATCAATATGATGAATCATAATGAGAAGACTATGCTTGTT
387 AAAAGCCTTTCTTGTGAAACCAAAGCATCAATATGATGAATCCTAATAAGAAGACTATGTTTATG
* * * * * ** *
3850793 ATGCCAAATCTTCAAAAGAATGGGGATTAGT-TGAGAATCCATGTTTGTCTTATTTAAGAAACAA
452 GTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTTATGTTTGCCTTATTTAAGAAACAA
* * *
3850857 ACTTTGATTCTATCAAAAAC-AGTGGAATGAAAAGCTTTTCTTGCAAC-ACTAAAGCATGAATGC
517 ACTTTGATTCTATCAAAAACGA-TGGAAAGAAAAGCTTTTCTTGCAACAAC-AAAGCATCAATGT
* ** * ** * * * *
3850920 CATATATGTTAAAGAGGGGAGTGTGTTTCGGCTTCCCAATCTTGAAAAGAATAGAGACTGCAACT
580 CATGTATCCTAATGAAAGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATAGAGACTGCTACG
* * *
3850985 AGAGTCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAA-AAAAG
645 AGAATCGATGCTTGTCTTATTTAAAGGATGAACTTTGATTTAAAGGAAAATAAGGCAAAGAAAAG
* *
3851049 ATTT-TAATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGTGAATGTGTTTATAGTGC
710 ATTTCCAA-GCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGTGAATGTGTTTATAGTCC
* * * *
3851113 CTAATCACAAACTGAATGAAGATCATTACTAG-TTCCAATGTTTGTCTCATTCGAGGCGCGAACT
774 CTAATCACAAAATGAATGAAGATCATTACTAGAATCC-ATGTTTGTCTCATTTGAGGCACGAACT
*** * * * * *
3851177 TAGACTCGGCAAAAGTTGGTGGG-AAAAAGCCTTTCTTGTGAAACCAAAGCATTAATATGATGAA
838 TAGACTTTACAAAAATTAGTGGGAAAAAAGCCTTTCTTGTGAAACCAAAACATCAATATGATGTA
* * * * * **
3851241 CCCTAATAAGAAGACTATGTTTATGGTCCCTTATCCTGAAAAGAAGGG
903 TCCTAATGAGAAGACTATGTTTATGGTGCC-TAACCTTAAAA-AAATG
* * * ** *
3851289 GGATTAGTATGAGTATTCATATTTGTCTTATTTAAGA-A-ACAACTTTGATTCTATCAAAAACGG
1 GGATTAGTATGAGTATTCTTGTTTGTCTAATTTAAGAGATA-AACTTCAATTCTATCAAAAACGA
* * * * * ** *
3851352 TGGAAGGAAAAGCTTTTCTTACTACACCAAAGCATGAATGTTAGGTATTTTAATGAAGGGAGTGT
65 TGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATGAATGTCATGTATCCTAATGAAGGGAATGT
* * * * * ** * *
3851417 GTTTCGGCTTCCAAATCTTGAAAGGAATAGAGACTGCTATGAGAATTAATGCTTGTCTTTTTTAA
130 ATTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGCTACAAGAATCAATGCTTGTCTTATTTAA
* * * * * * * * *
3851482 GGTATGGACTTTAATTTTAAGGAAAATAAGACACAGAAAAGATTTTCATGTAACAGAAAATCATC
195 GGGATGAACTTTGATTTAAAGGAAAAT-AGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATC
* *
3851547 AATATCATTTATCCTAATAAGGTGAATGTGTTTATAGTGCCTAATCACAAAACGAATGAAGATCA
259 AATATCATTTATCCTAATGAGGTGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
* * * *
3851612 TTACTAGAATCCATGTTTGTCTAATTTGAGGCACGAACTTAGAAC-TTAGA-AAAATTAGTGTGA
324 TTACTAG-ATTCATGTTTGTCTAATTTGAGGCACAAACTTAG-ACTTTA-ACAAAATTGGTGGGA
* * * * * * *
3851675 AAAATGCCTCTT-TT-TCAAAACCAAAGCTTCAATATGATGAATTCTAGTGAGAAGACTACGTTT
386 AAAAAGCCT-TTCTTGT-GAAACCAAAGCATCAATATGATGAATCCTAATAAGAAGACTATGTTT
* * *
3851738 ATGGTGCCTAATCCTAAAAAGAATAGGGATTAATAGGAGTA-TTATGTTTGCCTTATTTAAGAAA
449 ATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTTATGTTTGCCTTATTTAAGAAA
* * * *
3851802 CAAACATTGATTCTATCAAAAATGGTAGAAAGAAAAGCTTTTCTTGCAAC-ACGAAAGCATCAAT
514 CAAACTTTGATTCTATCAAAAACGATGGAAAGAAAAGCTTTTCTTGCAACAAC-AAAGCATCAAT
* *
3851866 -TCCATGTATCC-AGTTG-AAGTGAATGTGTTTTGGCTTCCCAAT-TTGCAAAAAAAT-GAAGAC
578 GT-CATGTATCCTA-ATGAAAG-GAATGTGTTTTGGCTTCCCAATCTTG-AAAAGAATAG-AGAC
* * * * *
3851926 TACTACAAGAATCGATGCTTGTCTTATTTAAGGGTTGAACTTCGATTTAAAGGAAAATAAGGCAA
638 TGCTACGAGAATCGATGCTTGTCTTATTTAAAGGATGAACTTTGATTTAAAGGAAAATAAGGCAA
* * *
3851991 AGAAAAGAATTCTACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGTGAATGTGTTTA
703 AGAAAAGATTTCCAAGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGTGAATGTGTTTA
* * * *
3852056 TAG-CACCTAATCACAAAATGACTGAAGATCATTACTAGAGTCCATGTTTGTCTTATTTGATGCA
768 TAGTC-CCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCA
* * ** *
3852120 CGAACTTAGACTTCA-AAAAATTAGTGGG-AAAAAGCCTTTCTTGTTAGGCCAAAACTTCAATAT
832 CGAACTTAGACTTTACAAAAATTAGTGGGAAAAAAGCCTTTCTTGTGAAACCAAAACATCAATAT
* *
3852183 CG-TGTATCCTAATGAGAAGCCAATGTTTATGGTGCCTAACCTTGAAAAAAAATG
897 -GATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAACCTT--AAAAAAATG
* * * * *
3852237 AGCAATAGTATGAGTATTCTTGTTTATCTAATTTAAGAGACAAACTTCAATTCTATCAAAAACGG
1 -GGATTAGTATGAGTATTCTTGTTTGTCTAATTTAAGAGATAAACTTCAATTCTATCAAAAACGA
* * * * ** * *
3852302 TGGAAACAAAAGCTTTTCTTGTGACAACAAAGCATGGATGTCATGTATCCTCTTAAAGGGAATAT
65 TGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATGAATGTCATGTATCCTAATGAAGGGAATGT
* * * ** * *
3852367 GTTTTGGCTTCCTAATCTTGAAAAGAGTAAAGACTGTTACAAGAATCGATGCTTGTCTTATTTAA
130 ATTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGCTACAAGAATCAATGCTTGTCTTATTTAA
** ** *
3852432 GGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTTGACACAAAAGAAAATCATA
195 GGGATGAACTTTGATTTAAAGGAAAATA-GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATC
* * * *
3852497 AAAATCATTTATCCTAATGAGTTGAATGTGTTTATAGTGCCTAATCAAAAAAGGAATGAAGATCA
259 AATATCATTTATCCTAATGAGGTGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
* * * * * * **
3852562 TTTCTAG-TTCCATGTTTGTCTAATTTGAGACACGAATTTAGACATTTCA-AAAATTAGTTTGAA
324 TTACTAGATT-CATGTTTGTCTAATTTGAGGCACAAACTTAGAC-TTTAACAAAATTGGTGGGAA
* * * *
3852625 AAATGCCTTTCTTTTGAAACCAAAGCTTTAATATGATGAATCCTAATAAGAAGACTATGTTTATG
387 AAAAGCCTTTCTTGTGAAACCAAAGCATCAATATGATGAATCCTAATAAGAAGACTATGTTTATG
* * *
3852690 GTGCCTAATCCTTAAAAGAATGGGGATTATTAGGAGTA-TTATGTTTGCCTTATTTAAGAAACAA
452 GTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTTATGTTTGCCTTATTTAAGAAACAA
* * * * * * *
3852754 ACATTAATTCTATCAAAAATGGTGGAAAGGAAAA-CTTTTCTTGCAACACCAAAACATCAATTTC
517 ACTTTGATTCTATCAAAAACGATGGAAA-GAAAAGCTTTTCTTGCAACAACAAAGCATCAATGTC
* ** * * * * *
3852818 ATGTACCCTCTTGAAGGGAATGTGTTTTGGCTTCCCAATC-TGTAAAATAAAAGAGATTGTTACG
581 ATGTATCCTAATGAAAGGAATGTGTTTTGGCTTCCCAATCTTG-AAAAGAATAGAGACTGCTACG
* * * * * *
3852882 GGAATCGATGCTTGTCTTATTT-AAGGTATGAGCATTGATTTTATGGAAAATAAGGCGAAGAAAA
645 AGAATCGATGCTTGTCTTATTTAAAGG-ATGAACTTTGATTTAAAGGAAAATAAGGCAAAGAAAA
* **** * * * * *
3852946 AATTTTTTTGCAAAAGAAAATCATCAATATCATTTATCTTAAAGAGGGGAATGTGTTTATTGTAC
709 GATTTCCAAGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGTGAATGTGTTTATAGTCC
* * * *
3853011 CTAATCACAAAATGAA-GAAAGAACAATAGTAGAATCTATGTTTGTCTCATTTGAGGCACGAACT
774 CTAATCACAAAATGAATG-AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACT
* * ** **
3853075 TAGACTTTACAAAAATT-GATGGGAAAAATGCCATTCTTACGAGTCCAAAACATCAATATCG-TG
838 TAGACTTTACAAAAATTAG-TGGGAAAAAAGCCTTTCTTGTGAAACCAAAACATCAATAT-GATG
* *
3853138 TATCCTAATGAGAAGA-TGATGTTTATGCTGCCTAAGCTTGAAAAAAATG
901 TATCCTAATGAGAAGACT-ATGTTTATGGTGCCTAACCTT-AAAAAAATG
* * * *
3853187 GGATTAGTATGAGTATTTTTGTTTGTCAAATTTAAGAGATAAACTTCAATTCTATAAAAAACAAT
1 GGATTAGTATGAGTATTCTTGTTTGTCTAATTTAAGAGATAAACTTCAATTCTATCAAAAACGAT
** * * * * * *
3853252 CTAAAGAAAAGCTTTTCTTGTGAGACCAAAGCATCAATGTCATGTATCTTAATGAAGGGAACGTG
66 GGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATGAATGTCATGTATCCTAATGAAGGGAATGTA
* * * *
3853317 TTTTAGCATCCCAATCTTGAAAAGATTGGAGACTGCTACAAGAATCAATGCTTGTCTTATATAAG
131 TTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGCTACAAGAATCAATGCTTGTCTTATTTAAG
3853382 GGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCA
196 GGATGAACTTTGATTTAAAGGAAAATA-GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCA
* *
3853447 ATATCATTTATCCTAATGAGGTGAATGTGTTTATGGCGCCTAATCACAAAATGAATGAAGATCAT
260 ATATCATTTATCCTAATGAGGTGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAT
* ** *
3853512 TACTAG-TTCAATGTTTATCTTCTTTGAGGCACAAACTTAGACTTT-ACAAAAATTGGTTGGAAA
325 TACTAGATTC-ATGTTTGTCTAATTTGAGGCACAAACTTAGACTTTAAC-AAAATTGGTGGGAAA
* *
3853575 AAAGCCTTTCTTGGGAAACCAAAGCATCAATATGATGAATCCTAATGAGAAGACTATGTTTATGG
388 AAAGCCTTTCTTGTGAAACCAAAGCATCAATATGATGAATCCTAATAAGAAGACTATGTTTATGG
* * * * * *
3853640 TGCCTAATCTTGAAAAGAATGGGGATTAGCATGAGTATTTCTGTTTGTCTTATTTAAGAAATAAA
453 TGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTTATGTTTGCCTTATTTAAGAAACAAA
* ** * **
3853705 CTTTGATTCTATCAAAAACGATGGAAAGAAAAGCGTTTCTTGTGACAACAAAGCATGAATGTTTT
518 CTTTGATTCTATCAAAAACGATGGAAAGAAAAGCTTTTCTTGCAACAACAAAGCATCAATGTCAT
* ** * * *
3853770 GTGTCCTTTTGAAAGGAGTGTGTTTTGGCTTCCCAATCTTCAAAACAATAGAGACTGCTACGAGA
583 GTATCCTAATGAAAGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATAGAGACTGCTACGAGA
* * * * * *
3853835 ATCAATGCTTATCTTATTTAAAGGATGAACTTTAACTTAAAGGAATATAGGGCAAAGAAAAGATT
648 ATCGATGCTTGTCTTATTTAAAGGATGAACTTTGATTTAAAGGAAAATAAGGCAAAGAAAAGATT
* * * * * *
3853900 T-CAATGCAAACGTAAATCATCAAAATCATTTATCCTAATGAGATGAATGTATTTATAGTCCTTA
713 TCCAA-GCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGTGAATGTGTTTATAGTCCCTA
*
3853964 ATCACAAACTGAAT
777 ATCACAAAATGAAT
3853978 CATCAAAAAC
Statistics
Matches: 3876, Mismatches: 620, Indels: 173
0.83 0.13 0.04
Matches are distributed among these distances:
945 8 0.00
946 422 0.11
947 302 0.08
948 807 0.21
949 1722 0.44
950 537 0.14
951 78 0.02
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (948 bp):
GGATTAGTATGAGTATTCTTGTTTGTCTAATTTAAGAGATAAACTTCAATTCTATCAAAAACGAT
GGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATGAATGTCATGTATCCTAATGAAGGGAATGTA
TTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGCTACAAGAATCAATGCTTGTCTTATTTAAG
GGATGAACTTTGATTTAAAGGAAAATAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAA
TATCATTTATCCTAATGAGGTGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATT
ACTAGATTCATGTTTGTCTAATTTGAGGCACAAACTTAGACTTTAACAAAATTGGTGGGAAAAAA
GCCTTTCTTGTGAAACCAAAGCATCAATATGATGAATCCTAATAAGAAGACTATGTTTATGGTGC
CTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTTATGTTTGCCTTATTTAAGAAACAAACTT
TGATTCTATCAAAAACGATGGAAAGAAAAGCTTTTCTTGCAACAACAAAGCATCAATGTCATGTA
TCCTAATGAAAGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATAGAGACTGCTACGAGAATC
GATGCTTGTCTTATTTAAAGGATGAACTTTGATTTAAAGGAAAATAAGGCAAAGAAAAGATTTCC
AAGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGTGAATGTGTTTATAGTCCCTAATCA
CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT
ACAAAAATTAGTGGGAAAAAAGCCTTTCTTGTGAAACCAAAACATCAATATGATGTATCCTAATG
AGAAGACTATGTTTATGGTGCCTAACCTTAAAAAAATG
Found at i:3850456 original size:159 final size:158
Alignment explanation
Indices: 3849314--3850457 Score: 369
Period size: 159 Copynumber: 7.2 Consensus size: 158
3849304 AAAAATGCCA
* * * * * *
3849314 TTCTTGTGAGACCAAAACATCAATATCATGTATCCCAATGATAAGACA-GTGCTTATGGTGCCTA
1 TTCTTGTGACAACAAAGCATCAATATCATGTATCCTAATGAGAAGA-ATGTGTTTATGGTGCCTA
* * * * * * * * *
3849378 A-CCTTAAAA-ACATTG-GGATTAGTATAAGTATTCTTATTTGTCTAATTTAAGAGATAAACTTC
65 ATCCTTAAAAGA-ATAGAAGACTAGTATGAGTATTCATATTTGTCTTATTTAAGAAACAAACTTT
* *
3849440 AATTCTATCAAAAACGGTGGAAA-AAATAGCTT
129 GATT-TA-CAAAAACGATGGAAAGAAA-AGCTT
** * * * * * * * *
3849472 TTCTTACGACAACAAAACATCAATATCATGTATCTTAATGA-AGGGAATGTATTT-CGACTTCCC
1 TTCTTGTGACAACAAAGCATCAATATCATGTATCCTAATGAGA-AGAATGTGTTTATG-GTGCCT
* ** * ** ** **
3849535 AAT-CTTGAAAAGAAT-GGAGACT-GCTACAAG-AATCGATGCTTGTCTTATTTAAGGGATGAAC
64 AATCCTT-AAAAGAATAGAAGACTAG-TATGAGTATTC-ATATTTGTCTTATTTAAGAAACAAAC
*
3849596 TTTGATTTA-AAGGAAA--ATAGCGCAAAGAAAAGATT
126 TTTGATTTACAA--AAACGAT-G-G-AAAGAAAAGCTT
* * * * * * * * ** ** *
3849631 TCCATG-CAAAAGAAAATCATCAATATCATTTATCCTTATGAGGTGAATGTGTTTATAATACCTA
1 TTCTTGTGACAA-CAAAGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTA
* * * * * **
3849695 ATCAC--AAAATGAAT-GAAGA-T--CATCACTAGTTCATGTTTGTCTTATTTGAGGCACAAACT
65 ATC-CTTAAAA-GAATAGAAGACTAGTATGAGTA-TTCATATTTGTCTTATTTAAGAAACAAACT
* ** * * **
3849754 TAGACTTTAACAAAATTGGTGGGAA-AAAAGCCA
127 TTGA-TTT-ACAAAAACGATGGAAAGAAAAGCTT
* * ** * * ***
3849787 TTCTTGTGGAGC--CAAAGCATCAATATGATGAATCCTAAAAAGACGACTACATTTATGGTGCCT
1 TTCTTGT-GA-CAACAAAGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCT
* * * ** *
3849850 AATCCTAAAAAGAATAG-AGGCTAGTATAAGTATTTTTGTTTGTCTTATTTAAGAAACAAACTTT
64 AATCCTTAAAAGAATAGAAGACTAGTATGAGTATTCATATTTGTCTTATTTAAGAAACAAACTTT
*
3849914 GATTCTATCAAAAACGATGGAAAGAAAAGCAT
129 GATT-TA-CAAAAACGATGGAAAGAAAAGCTT
* * * * * * *
3849946 TTATTGTGACAACAAAGCATGAATGTCATGTATCCTAATGA-AATGAGTGCGTTT-TGGCTTCCC
1 TTCTTGTGACAACAAAGCATCAATATCATGTATCCTAATGAGAA-GAATGTGTTTATGG-TGCCT
** * ** * **
3850009 AAT-CTTGAAAAGAATAG-AGACT-GCTGCGAG-AATCGATACGTGTCTTATTTAA-AGGATGAA
64 AATCCTT-AAAAGAATAGAAGACTAG-TATGAGTATTC-ATATTTGTCTTATTTAAGA-AACAAA
** * * *
3850069 CTTTGATTTA-AAGGAAAATAGGGCAAAGAAATGATT
125 CTTTGATTTACAA--AAACGATGG-AAAGAAAAGCTT
* ** * * * ** * *
3850105 TCCAAGCAGA-AGA-AAATCATCAATATCATTTATCCTAATGAGCTGAATGTGTTTATAGTCCCT
1 TTCTTG-TGACA-ACAAAGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCT
* * * * * *
3850168 AATCAC--AAAATGAAT-GAAGA-TGATTACT-AGT-TCCATATTTGTCTCATTTGAGACACGAA
64 AATC-CTTAAAA-GAATAGAAGACT-AGTA-TGAGTATTCATATTTGTCTTATTTAAGAAACAAA
* ** * *
3850227 CTTAGACTTTACAAAAATTAGTGGGAA-AAAAGCCT
125 CTTTGA-TTTACAAAAACGA-TGGAAAGAAAAGCTT
* * * * *
3850262 TTCTTGCGA-AATCAAAGCATCAATATGATGAATCCTAATGAGAAGACTATGTTTATGGTGCCTA
1 TTCTTGTGACAA-CAAAGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTA
* * *
3850326 ATCCTTAAAAGAATAG-GGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAAACAAACTTTG
65 ATCCTTAAAAGAATAGAAGACTAGTATGAGTATTCATATTTGTCTTATTTAAGAAACAAACTTTG
3850390 ATTCTATCAAAAACGATGGAAAGAAAAGCTT
130 ATT-TA-CAAAAACGATGGAAAGAAAAGCTT
* * * *
3850421 TTCTTGTGACACCGAAGCATGAATGTCATGTATCCTA
1 TTCTTGTGACAACAAAGCATCAATATCATGTATCCTA
3850458 TTGAAGGGAA
Statistics
Matches: 706, Mismatches: 201, Indels: 157
0.66 0.19 0.15
Matches are distributed among these distances:
155 2 0.00
156 65 0.09
157 108 0.15
158 212 0.30
159 302 0.43
160 15 0.02
161 2 0.00
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.31
Consensus pattern (158 bp):
TTCTTGTGACAACAAAGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAA
TCCTTAAAAGAATAGAAGACTAGTATGAGTATTCATATTTGTCTTATTTAAGAAACAAACTTTGA
TTTACAAAAACGATGGAAAGAAAAGCTT
Found at i:3854185 original size:264 final size:263
Alignment explanation
Indices: 3853715--3854241 Score: 698
Period size: 264 Copynumber: 2.0 Consensus size: 263
3853705 CTTTGATTCT
* * *
3853715 ATCAAAAACGATGGAAAGAAAAGCGTTTCTTGTGACAACAAAGCATGAATGTTTTGTGTCCTTTT
1 ATCAAAAACGATGGAAAGAAAAGCGTTTCTTGTGACAACAAAGCATGAATGTCTTGTATCCTATT
* *
3853780 GAAAGGAGTGTGTTTTGGCTTCCCAATCTTCAAAACAATAGAGACTGCTACGAGAATCAATGCTT
66 GAAAGGAATGAGTTTTGGCTTCCCAATCTTCAAAACAATAGAGACTGCTACGAGAATCAATGCTT
* * *
3853845 ATCTTATTTAAAGGATGAACTTTAACTTAAAGGAATATAGGGCAAAGAAAAGATTTCAATGCAAA
131 ATCTTATTTAAAGGATGAACATTAACTTAAAGGAAAACAGGGCAAAGAAAAGATTTCAAT-CAAA
* * * * * *
3853910 CGTAAATCATCAAAATCATTTATCCTAATGAGATGAATGTATTTATAGT-CCTTAATCACAAACT
195 AGAAAATCATCAAAATCATTTATCATAATGAGATAAATGTATTTATAGTGCCTCAA-CACAAAAT
3853974 GAATC
259 GAATC
* * * *
3853979 ATCAAAAACGATGTAAAGAAAAGCTTTTCTTGTGACACCGAAGCATGAATGTCTTGTATCCTATT
1 ATCAAAAACGATGGAAAGAAAAGCGTTTCTTGTGACAACAAAGCATGAATGTCTTGTATCCTATT
* * * * * * * * *
3854044 GAAGGGAATGAGTTTTGGCTTCCTAATCTTGAAAAGAATGGAGGCTGTTATGGGAATCAATGCTT
66 GAAAGGAATGAGTTTTGGCTTCCCAATCTTCAAAACAATAGAGACTGCTACGAGAATCAATGCTT
* * * *
3854109 GTCTTATTTAAAGGATGAACATTGATTTAAAGGAAAACAGGGCAAGGAAAAGATTTTCACAT-AA
131 ATCTTATTTAAAGGATGAACATTAACTTAAAGGAAAACAGGGCAAAGAAAAGA-TTTCA-ATCAA
* * *
3854173 AAGAAAATCATCAATATCATTTATCATAATGAGGTAAATGTGTTTATAGTGCCTCAACACAAAAT
194 AAGAAAATCATCAAAATCATTTATCATAATGAGATAAATGTATTTATAGTGCCTCAACACAAAAT
3854238 GAAT
259 GAAT
3854242 GAAGATCATT
Statistics
Matches: 226, Mismatches: 34, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
264 214 0.95
265 10 0.04
266 2 0.01
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.30
Consensus pattern (263 bp):
ATCAAAAACGATGGAAAGAAAAGCGTTTCTTGTGACAACAAAGCATGAATGTCTTGTATCCTATT
GAAAGGAATGAGTTTTGGCTTCCCAATCTTCAAAACAATAGAGACTGCTACGAGAATCAATGCTT
ATCTTATTTAAAGGATGAACATTAACTTAAAGGAAAACAGGGCAAAGAAAAGATTTCAATCAAAA
GAAAATCATCAAAATCATTTATCATAATGAGATAAATGTATTTATAGTGCCTCAACACAAAATGA
ATC
Found at i:3854669 original size:739 final size:738
Alignment explanation
Indices: 3853243--3854707 Score: 1971
Period size: 739 Copynumber: 2.0 Consensus size: 738
3853233 CAATTCTATA
* *
3853243 AAAAACAATCTAAAGAAAAGCTTTTCTTGTGAGACCAAAGCATCAATGTCATGTATCTTAATGAA
1 AAAAACAATCTAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAA
* *
3853308 GGGAACGTGTTTTAGCATCCCAATCTTGAAAAGATTGGAGACTGCTACAAGAATCAATGCTTGTC
66 GGGAACGAGTTTTAGCATCCCAATCTTGAAAAGAATGGAGACTGCTACAAGAATCAATGCTTGTC
* * *
3853373 TTATATAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
131 TTATATAAAGGATGAACATTGATTTAAAGGAAAACAGGGCAAAGAAAAGATTTCCAT-CAAAAGA
* * *
3853438 AAATCATCAATATCATTTATCCTAATGAGGTGAATGTGTTTATGGCGCCTAATCACAAAATGAAT
195 AAATCATCAATATCATTTATCATAATGAGGTAAATGTGTTTATAGCGCCTAATCACAAAATGAAT
** * *
3853503 GAAGATCATTACTAGTTCAATGTTTATCTTCTTTGAGGCACAAACTTAGACTTTACAAAAATTGG
260 GAAGATCATTACTAGTTCAATGTTTATCTTCTTTGAGGCACAAACACAAACTTTACAAAAATTGA
** *
3853568 TTGGAAAAAAGCCTTTCTTGGGAAACCAAAGCATCAATATGATGAATCCTAATGAGAAGACTATG
325 AGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGAATCCTAATGAGAAGACTATG
* * * *
3853633 TTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGCATGAGTATTTCTGTTTGTCTTATTTAAG
390 TTTATGGTGCCTAATCTTCAAAAGAATGGGGATTAGCATAAGTATTTCCGTTTATCTTATTTAAG
* * *
3853698 AAATAAACTTTGATTCTATCAAAAACGATGGAAAGAAAAGCGTTTCTTGTGACAACAAAGCATGA
455 AAACAAACTTTGATTCTATAAAAAACGATGGAAAGAAAAGCGTTTCTTGAGACAACAAAGCATGA
** * *** *
3853763 ATGTTTTGTGTCCTTTTGAAAGGAGTGTGTTTTGGCTTCCCAATCTTCAAAACAATAGAGACTGC
520 ATGTCATGTATCCTAAAGAAAGGAGTGTGTTTTGGCTTCCCAATCTTAAAAACAATAGAGACTGC
3853828 TACGAGAATCAATGCTTATCTTATTTAAAGGATGAACTTTAACTTAAAGGAATATAGGGCAAAGA
585 TACGAGAATCAATGCTTATCTTATTTAAAGGATGAACTTTAACTTAAAGGAATATAGGGCAAAGA
* * *
3853893 AAAGATTTCAATGCAAACGTAAATCATCAAAATCATTTATCCTAATGA-GATGAATGTATTTATA
650 AAAGATTTCAATGCAAAAGAAAATCATCAAAATCATTTATCCTAAAGAGGA-GAATGTATTTATA
3853957 GT-CCTTAATCACAAACTGAATCATC
714 GTGCC-TAATCACAAACTGAATCATC
* * * * * *
3853982 AAAAACGATGTAAAGAAAAGCTTTTCTTGTGACACCGAAGCATGAATGTCTTGTATCCTATTGAA
1 AAAAACAATCTAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAA
* * * * * * ***
3854047 GGGAATGAGTTTTGGCTTCCTAATCTTGAAAAGAATGGAGGCTGTTATGGGAATCAATGCTTGTC
66 GGGAACGAGTTTTAGCATCCCAATCTTGAAAAGAATGGAGACTGCTACAAGAATCAATGCTTGTC
* *
3854112 TTATTTAAAGGATGAACATTGATTTAAAGGAAAACAGGGCAAGGAAAAGATTTTCACAT-AAAAG
131 TTATATAAAGGATGAACATTGATTTAAAGGAAAACAGGGCAAAGAAAAGA-TTTC-CATCAAAAG
*
3854176 AAAATCATCAATATCATTTATCATAATGAGGTAAATGTGTTTATAGTGCCTCAA-CACAAAATGA
194 AAAATCATCAATATCATTTATCATAATGAGGTAAATGTGTTTATAGCGCCT-AATCACAAAATGA
** * *
3854240 ATGAAGATCATTACTAGTTCCGTG-TTGTC-TCATTTGAGGCATAAACACAAACTTTACAAAAAT
258 ATGAAGATCATTACTAGTTCAATGTTTATCTTC-TTTGAGGCACAAACACAAACTTTACAAAAAT
* * * *
3854303 TGAAGGGAAAAGAGCCTTTTTTTGCGAAACCAAAGCATCATTATGATGAATTCTAATGAGAAGAC
322 TGAAGGGAAAAAAGCC-TTTCTTGCGAAACCAAAGCATCAATATGATGAATCCTAATGAGAAGAC
* *
3854368 TATGTTTATTGTGCCTAATCTTCAAAAGAATGGGGATTAGTATAAGTA-TTCACGTTTATCTTAT
386 TATGTTTATGGTGCCTAATCTTCAAAAGAATGGGGATTAGCATAAGTATTTC-CGTTTATCTTAT
* * * * * *
3854432 TTAAGAACCAAACTTTGATTCTATAAAAAACGGTGGAAGGAAAAGCTTTTCTTGCAG-CACCAAG
450 TTAAGAAACAAACTTTGATTCTATAAAAAACGATGGAAAGAAAAGCGTTTCTTG-AGACAACAAA
* * *
3854496 GCATGAATGTCATGTATGCTAAAG-AAGAGAGTGTGTTTTGGCTTCCCAATCTTAAAAAGAATGG
514 GCATGAATGTCATGTATCCTAAAGAAAG-GAGTGTGTTTTGGCTTCCCAATCTTAAAAACAATAG
* * * * * * * * *
3854560 AGACTGTTACGGGAGTCGATGCTTATCTTATTTAAGGGATGGACTTTGATTTAAAGGAA-ATTAT
578 AGACTGCTACGAGAATCAATGCTTATCTTATTTAAAGGATGAACTTTAACTTAAAGGAATA-TAG
* * * *
3854624 GGTAAGGAAAAGATTTTC-ATGCAAAAGAAAATCATCAATATCATTTATCTTAAAGAGGAGAATG
642 GGCAAAGAAAAGA-TTTCAATGCAAAAGAAAATCATCAAAATCATTTATCCTAAAGAGGAGAATG
*
3854688 TGTTTATAGTGCCTAATCAC
706 TATTTATAGTGCCTAATCAC
3854708 GAAAAGAATG
Statistics
Matches: 629, Mismatches: 85, Indels: 24
0.85 0.12 0.03
Matches are distributed among these distances:
737 2 0.00
738 50 0.08
739 559 0.89
740 15 0.02
741 3 0.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.31
Consensus pattern (738 bp):
AAAAACAATCTAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAA
GGGAACGAGTTTTAGCATCCCAATCTTGAAAAGAATGGAGACTGCTACAAGAATCAATGCTTGTC
TTATATAAAGGATGAACATTGATTTAAAGGAAAACAGGGCAAAGAAAAGATTTCCATCAAAAGAA
AATCATCAATATCATTTATCATAATGAGGTAAATGTGTTTATAGCGCCTAATCACAAAATGAATG
AAGATCATTACTAGTTCAATGTTTATCTTCTTTGAGGCACAAACACAAACTTTACAAAAATTGAA
GGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGAATCCTAATGAGAAGACTATGT
TTATGGTGCCTAATCTTCAAAAGAATGGGGATTAGCATAAGTATTTCCGTTTATCTTATTTAAGA
AACAAACTTTGATTCTATAAAAAACGATGGAAAGAAAAGCGTTTCTTGAGACAACAAAGCATGAA
TGTCATGTATCCTAAAGAAAGGAGTGTGTTTTGGCTTCCCAATCTTAAAAACAATAGAGACTGCT
ACGAGAATCAATGCTTATCTTATTTAAAGGATGAACTTTAACTTAAAGGAATATAGGGCAAAGAA
AAGATTTCAATGCAAAAGAAAATCATCAAAATCATTTATCCTAAAGAGGAGAATGTATTTATAGT
GCCTAATCACAAACTGAATCATC
Found at i:3854872 original size:475 final size:475
Alignment explanation
Indices: 3853979--3859565 Score: 6091
Period size: 475 Copynumber: 11.8 Consensus size: 475
3853969 AAACTGAATC
* * * * * * *
3853979 ATCAAAAACGATGTAAAGAAAAGCTTTTCTTGTGACACCGAAGCATGAATGTCTTGTATCCTATT
1 ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT
* * * ** *
3854044 GAAGGGAATGAGTTTTGGCTTCCTAATCTTGAAAAGAATGGAGGCTGTTATGGGAATCAATGCTT
66 GAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACAGGAATCGATGCTT
* * * * ***
3854109 GTCTTATTTAAAGGATGAACATTGATTTAAAGGAAAACAGGGCAAGGAAAAGATTTTCACATAAA
131 GTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAA
*
3854174 AGAAAATCATCAATATCATTTATCATAATGAGGTA-AATGTGTTTATAGTGCCTCAA-CACAAAA
196 AGAAAATCATCAATATCATTTATCCTAATGAGG-AGAATGTGTTTATAGTGCCT-AATCACAAAA
* * ** ** * *
3854237 TGAATGAAGATCATTACTAG-TTCCGTG-TTGTCTCATTTGAGGCATAAACACAAACTTTACAAA
259 TGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAGAAA
* * * * *
3854300 AATTGAAG-GGAAAAGAGCCTTTTTTTGCGAAACCAAAGCATCATTATGATGAATTCTAATGAGA
324 AATT--AGTGGAAAAAAGCC-TTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGA
* * * * * *
3854364 AGACTATGTTTATTGTGCCTAATCTTCAAAAGAATGGGGATTAGTATAAGTATTCACGTTTATCT
386 AGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCT
*
3854429 TATTTAAGAACCAAACTTTGATTCT
451 TATTTAAGAAACAAACTTTGATTCT
* * * * *
3854454 ATAAAAAACGGTGGAAGGAAAAGCTTTTCTTGC-AGCACCAAGGCATGAATGTCATGTATGCTAA
1 ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGA-CACCAAAGCATCAATGTCATGTATCCTAA
* * * * * *
3854518 AGAAGAGAGTGTGTTTTGGCTTCCCAATCTTAAAAAGAATGGAGACTGTTACGGGAGTCGATGCT
65 TGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACAGGAATCGATGCT
* * * * * *
3854583 TATCTTATTTAAGGGATGGACTTTGATTTAAAGGAAATTATGGTAAGGAAAAGATTTTCATGCAA
130 TGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAA
* *
3854648 AAGAAAATCATCAATATCATTTATCTTAAAGAGGAGAATGTGTTTATAGTGCCTAATCACGAAAA
195 AAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC-AAAA
* * * * * * *
3854713 -GAATGAACACCATTAGTAGAATCCTTGTTTGTCTCATTTAAGGCACAAACTTAGACTTTAGAGA
259 TGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAGAAA
* * * ** *
3854777 AATTAGTGGAAAAAAGCCTTTCTCGCGAATCCGAATAATCAATATGATGTATCTTAATGAGAAGA
324 AATTAGTGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGA
* * *
3854842 CTATGTTTCTGGTGCCTAATCCTAAAAAGAATAGGGATTAGTATGAGTATTAATGTTTGTCTTAT
389 CTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTAT
3854907 TTAAGAAACAATA-TTTGATTCT
454 TTAAGAAACAA-ACTTTGATTCT
* * * * * * *
3854929 ATAAAAAATGATGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATGAATGTCGTGTATCCTATT
1 ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT
** * * * ** *
3854994 GAAGGGAATGTGTTTTTCCTTCCTAATCTTAAAAAGAATGGAGAATGTTATGGGAATCAATGCTT
66 GAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACAGGAATCGATGCTT
* ** * *
3855059 GTCTTATTGAAAAGATGAACTTTGATTTAAAGGAAAATAGGGCAAGGAAAAGA-TTTCTACGCAA
131 GTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTTC-ATGCAA
*
3855123 AA-AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAA
195 AAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAT
* * * *
3855187 AAATGAACACCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGGCTTT-GCAAA
260 GAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAG-AAA
* * * *
3855251 AATTAGTGGAAAAAAGCCTTTCTTACGAAACTAAAGCATCAATATGATGTATCTTAATGATAAGA
324 AATTAGTGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGA
* * * * *
3855316 GTATGTTTATGGTGCCTAATTCTAAAAAGAATGAGGATTAGTATGAGTATTAATGTTTGACTTAT
389 CTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTAT
* * *
3855381 TTAA-AAGATAAACTTTTATTCC
454 TTAAGAA-ACAAACTTTGATTCT
* * * * *
3855403 ATCAAAAACGCTGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATTTCTTGTATCCTATT
1 ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT
* * * * *
3855468 AAAGGGAATGTGTTTTGGCTTCCAAAT-TATGAAAAGAATGGAGACTATTATAGGAATCAATGCT
66 GAAGGGAATGTGTTTTGGCTTCCCAATCT-TGAAAAGAATGGAGACTGTTACAGGAATCGATGCT
* * * * * * * * * *
3855532 TATCTTATTTAAGGGATGAACATTGATTTCATGAAAAATAAGGCGAAGAAAAGATTTCCGTACAA
130 TGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAA
* * * * * *
3855597 AA-AAATTTCATCATTATCATTTATCCTAAAGAGGAAAATGTGTTTATTGTACCTAATCACAAAA
195 AAGAAA-ATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAA
** * * * * *
3855661 TGAGGGAAGATCATTAGTGGAATCTATGTTTGTTTCTTTTGAGGCACGAACTTAGACTTTACG-A
259 TGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTA-GAA
* * *
3855725 AAATTGGTGGGAAAAATGCCTTTCTTGCGAGACCAAAAG-ATCAATATCG-TGTATCCTAATGAG
323 AAATTAGT-GGAAAAAAGCCTTTCTTGCGAAACC-AAAGCATCAATAT-GATGTATCCTAATGAG
* * * * *
3855788 AAGACAATGTTTGTGGTGTCTAA-CCTTGAAAAA-AATGGGGAGTAGTATGAATATTCATGTTTG
385 AAGACTATGTTTATGGTGCCTAATCC-T-AAAAAGAATGGGGATTAGTATGAGTATTCATGTTTG
* * * **
3855851 TCTAATTTAGGAGACAAACTTCAATTCT
448 TCTTATTTAAGAAACAAACTTTGATTCT
* *
3855879 ATCAAAAACAGTGGAAAGAAAAGCTTGTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT
1 ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT
* ** * *
3855944 GAAAGGAATGCATTTTGGCTTCCCAATCTTGAAATA-AATGGAGATTGTTACAAGAATCGATGCT
66 GAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAA-AGAATGGAGACTGTTACAGGAATCGATGCT
* * *
3856008 TGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAAGGCAAAGAAAAGATTTTTACGCAA
130 TGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAA
* *
3856073 AAGAAAATCATCAATATCATTTAACCTAATGAGGTGAATGTGTTTATAGTGCCTAATCACAAAAT
195 AAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAT
* * * * *
3856138 GAATGAAGATCATTACTAGAATCCATGTTTG-CTTAATTTCAGGCACGAACCTAAACTTTACAAA
260 GAATGAAGATCATTACTAGAATCCATGTTTGTC-TCATTTGAGGCACGAACTTAGACTTTAGAAA
** * * * * *
3856202 AATTAGTTGGAAAAAAGCCTTTCTTATGGAACCAAAGCTTCAATACGGTGAATCCTAATGAGAAG
324 AATTAG-TGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAG
* * * * *
3856267 ACTATGTTTATGCTGCCTAATCCTGAAAA-AATGGGGATTAGCATGAGTATTCATATTTGTCATA
388 ACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTA
3856331 TTTAAGAAACAAACTTTGATTCT
453 TTTAAGAAACAAACTTTGATTCT
* *
3856354 ATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTACT
1 ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT
* * * * * *
3856419 GAAGGGAATATATTTTGGCTTCCCAATCTTGAAAAGAATAGAGACTATTACAAGAATTGATGCTT
66 GAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACAGGAATCGATGCTT
* * *
3856484 CTCTTATTTAAGGGATAAACTTTGATTTAATGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAA
131 GTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAA
* * * * * ** * * *
3856549 AAAAAATCAGCAAAATCGTTTATTCTAATGAGTTGAATGTGTTTATAGTGCCTAACCAAAAAAAG
196 AGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG
* * * * *
3856614 AATGAAGATCATTACTAG-TTCCATGTTTGTCTCATTTGAAGCACAAACTTAAACTTTACAAAAA
261 AATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAGAAAAA
* * *
3856678 TTAATGGAAAAAAGCCTTTCTTGCGAATCCAAAGCATCAATATGATGTATCTTAATGAGAAGACT
326 TTAGTGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACT
* * * * * *
3856743 ATATTTTTGGTGACTAATCCTAAAAAGAATGGGGTTTAGTATGAGTATTCATTTTTGTCTTACTT
391 ATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTT
* *
3856808 AAGAAACAATCTTTGTTTCT
456 AAGAAACAAACTTTGATTCT
* * **
3856828 AT-AAAAACGATGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCAAAAATGTCATGTATCCTAAT
1 ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT
* * * * * *
3856892 GAAGAGAATATGTTTTTGG-TTCCCAATGTTGAAAACAAAGGAGACTGTTAC-GAGAATTGATGC
66 GAAGGGAATGTG-TTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACAG-GAATCGATGC
* * * * *
3856955 TTGTCTTATTTAAGGTATAAACTTTGATCTT--AGAAAAATAGGGCAAAGAAGAGATTTCCATGC
129 TTGTCTTATTTAAGGGATGAACTTTGAT-TTAAAGGAAAATAGGGCAAAGAAAAGATTTTCATGC
* * * * * * *
3857018 AATAGCAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTGTAATGCCTAATAAGAAA
193 AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAA
* * * *
3857083 ATGAATGAAG-GCCTTATTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAAAA
258 ATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAGAA
* * * * *
3857147 AAATTGGTGGAAAAAAGCCATTT-TTTCGATACCAAAGCATCAGTATGATGTATCCTAATAAGAA
323 AAATTAGTGGAAAAAAGCC-TTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAA
* * *
3857211 GACTATGTTTATGGTGCCTAATCC-AGAAAAGAATAGGGATTAGAATAAGTATTCATGTTT-TCC
387 GACTATGTTTATGGTGCCTAATCCTA-AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGT-C
*
3857274 TTATTTAAGAAACAAACATTGATTCT
450 TTATTTAAGAAACAAACTTTGATTCT
* * * * * * *
3857300 GTCAAAAACGGTAGAAGGAAAAGCTTTTCTTGCGACACTAAAGCATCAATTTCTTGTATCCTATT
1 ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT
* * * * *
3857365 AAAGGGAATGTGTTTTGGCTTCCAAAT-TATGAAAAGAATAGAAACTGTTATAGGAATCGATGCT
66 GAAGGGAATGTGTTTTGGCTTCCCAATCT-TGAAAAGAATGGAGACTGTTACAGGAATCGATGCT
* * * * * * * * ** *
3857429 TGTCTTACTTAAGGGATAAACATTGATTTTATGAAAAATAAGGCGAAGAAAAGATTTTTGTACAA
130 TGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAA
* * * * *
3857494 AAGAAAATCATCAATATCATTTATCCTAAAGAGGAAAATGTGTTTATTGTACCTAATCAAAAAAT
195 AAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAT
** * * * *
3857559 GAGGGAAGATCATTAGTGGAATCTATGTTTGTCTCTTTTGAGGCACGAACTTAGACTTTACG-AA
260 GAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTA-GAAA
* * * * * * *
3857623 AATTGGGGGGAAAATGCCTTTCTTGCGAGACCAAAAG-ATCAATATCATGTATCCCAATGAGAAG
324 AATTAGTGGAAAAAAGCCTTTCTTGCGAAACC-AAAGCATCAATATGATGTATCCTAATGAGAAG
* * * * *
3857687 ACAATGTTTGTGGTGCCT-ATCCTTGAAAAA-AATGGAGATTAGTATGAATATTCATGTCTGTCT
388 ACTATGTTTATGGTGCCTAATCC-T-AAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCT
* * * * ** *
3857750 AACTTAGGAGACAAACTTCAATTCC
451 TATTTAAGAAACAAACTTTGATTCT
** ** * * *
3857775 ATCAAAAATAGTGGAAAGAAAAGCTTTTCTTGTAACACCAAAGCATGAATGTCATGTCTCTTAAT
1 ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT
* * * * * * *
3857840 AAAGGGAATGTGTTTTGGCTTCCTAATCTTGAAATGAATAGAGATTGCTACAAGAATCGATGCTT
66 GAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACAGGAATCGATGCTT
* * *
3857905 GTCTTATTTAAGGGATAAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGA-TTTCTACGGAA
131 GTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTTC-ATGCAA
* * *
3857969 AAGAAAATCATCAATATCATTTATCCTAATGACGTGAATGTGTTTATAGTGCCTAATCCCAAAAT
195 AAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAT
* * * * *
3858034 GAATGAAGATCAGTACTAGAATCCATTTTTG-CTTAATTTGAGGCAC-AGACATAAACTTT-GCA
260 GAATGAAGATCATTACTAGAATCCATGTTTGTC-TCATTTGAGGCACGA-ACTTAGACTTTAG-A
* * * *
3858096 AAAATTAGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCTTCAATATGGTGAATCTTAATGAGA
322 AAAATTAGT-GGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGA
* * * ** * *
3858161 AGAATATGTTTATGGTGCCTAATCCTGAAAAGAATGGGCATCGGCATGAGTATTCATGTTGGTCT
386 AGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCT
3858226 TATTTAAGAAACAAACTTTGATTCT
451 TATTTAAGAAACAAACTTTGATTCT
* * *
3858251 ATCAACAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCATTGTCATGTATCCTACT
1 ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT
* * ** * * *
3858316 GAAGGGATTATGTTTTGGCTTCCCAATCTTGAAAAGAATAAAGACTATTACAAGAATCGATGCGT
66 GAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACAGGAATCGATGCTT
** * * * *
3858381 GGATTATTTAAGGGATAAACTTTGATTTAACGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAA
131 GTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAA
* * ** * *
3858446 AGAAAATCATCAAAATCATTTATTCTAATGAGTTGAATGTCTTTATAGTGCCTAATCACAAAAAG
196 AGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG
* * * *
3858511 AATGAAGATCATTACTAG-TTCCATGTTTGTCTCATTTGAAGCACAAACTTAGACTTTACAAAAA
261 AATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAGAAAAA
* *
3858575 TTAGTGAGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGAATCCTAATGAGACGAC
326 TTAGTG-GAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGAC
* * *
3858640 TATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTGGTATGAGTATTCATGTTTGTCTTATT
390 TATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATT
*
3858705 TATGAAACAAACTTTGATTCT
455 TAAGAAACAAACTTTGATTCT
** * * * * * * *
3858726 ATTGAAAATGGTGGAAAGAAAAGCTTTTCTTGGGACACCAAAGCTTTAATGCCTTGTATCCTGAT
1 ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT
* * * * ** ** * *
3858791 AAAAGGAGTGTGTTTTGGCTTCCCAATCTTGAAAGGAATGGAGACTACTACTTGATTTGATGCTT
66 GAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACAGGAATCGATGCTT
* * * * * * * *
3858856 ATCTTATTT-A---A-GAACTTTAATTTTATGTAAAATAGGACAAATAAAAGATTTCCATGCAAT
131 GTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAA-
* * * * *
3858916 AA-AAAATCATCAATATCAATTATCCTAATGAGGAGATTGTGTATATAGTGCCTAATAACAAAGT
195 AAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAT
* * * * *
3858980 GAATGAAGATC-TTAGTAGAATCCATGTTTGCCTAATTTGAGACACGAACTTAGACTTTATAAAA
260 GAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAGAAAA
* * *
3859044 ATT-G-GCAAGAAAAAGCCCTTT-TTACGAAAACAAAGCATCAATATGATGTATCCTAATGAGAA
325 ATTAGTG-GA-AAAAAG-CCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAA
* * * * *** * *
3859106 GACCATGTTTATGGTGCCTATTCCTGAAAGGAATAAAGATTAGTATGAGTATTCGTGTTTGCCTT
387 GACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTT
3859171 ATTTAAGAAACAAACTTTGATTCT
452 ATTTAAGAAACAAACTTTGATTCT
* * ** * * * *
3859195 ATC-AAAACGGTGAAAAGAAAAGCTTTTCTTGTGACACCAAAGCAAAAATTTGATATATCCTATT
1 ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT
* * * * *
3859259 GAAGGGAATGCGTTTTGGCTTCCAAATCTTGAAAAGAATAGAGACTATTACAGGAATTGATGCTT
66 GAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACAGGAATCGATGCTT
* * * * * * * *
3859324 GTCTTATTTAAGAGATGAACATTGATTTTACGGAAAATAAGGCGAAGAAAAGATTTCCGTGCAAA
131 GTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAA
* * *
3859389 AGAAAATTATCAATATCA--T-T--T-AT--GCAGAATGTGTTTATTA-TACCTAATCACAAAAT
196 AGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA-TAGTGCCTAATCACAAAAT
** * * * * * * *
3859445 GAGGGAAGATCATTAGTGGGATCCATGTTTGTCTCGTTTGGGGCAC-AATTTTAGACTTTACAAA
260 GAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAA-CTTAGACTTTAGAAA
* * * * *
3859509 AATTAGTCGGAAAAATGTCTTTTTTGC-AAGACCAAAACATCAATATCATGTATCCTA
324 AATTAGT-GGAAAAAAGCCTTTCTTGCGAA-ACCAAAGCATCAATATGATGTATCCTA
3859566 GCTGTAGACA
Statistics
Matches: 4295, Mismatches: 726, Indels: 190
0.82 0.14 0.04
Matches are distributed among these distances:
465 35 0.01
466 52 0.01
467 35 0.01
468 114 0.03
469 132 0.03
470 150 0.03
471 13 0.00
472 263 0.06
473 388 0.09
474 614 0.14
475 1630 0.38
476 808 0.19
477 61 0.01
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (475 bp):
ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT
GAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACAGGAATCGATGCTT
GTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAA
AGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG
AATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAGAAAAA
TTAGTGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACT
ATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTT
AAGAAACAAACTTTGATTCT
Found at i:3856399 original size:951 final size:951
Alignment explanation
Indices: 3853979--3859565 Score: 6337
Period size: 951 Copynumber: 5.9 Consensus size: 951
3853969 AAACTGAATC
* * * * *
3853979 ATCAAAAAC-GATGTAAAGAAAAGCTTTTCTTGTGACACCGAAGCATGAATGTCTTGTATCCTAT
1 ATCAAAAACAGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATGAATGTCATGTATCCTAA
* * * * * * *
3854043 TGAAGGGAATGAGTTTTGGCTTCCTAATCTTGAAAAGAATGGAGGCTGTTATGGGAATCAATGCT
66 TGAAAGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCT
* * * * * **
3854108 TGTCTTATTTAAAGGATGAACATTGATTTAAAGGAAAACAGGGCAAGGAAAAGATTTTCACATAA
131 TGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCACGCAA
*
3854173 AAGAAAATCATCAATATCATTTATCATAATGAGGTA-AATGTGTTTATAGTGCCTCAA-CACAAA
196 AAGAAAATCATCAATATCATTTATCCTAATGAGG-AGAATGTGTTTATAGTGCCT-AATCACAAA
* * * ** **
3854236 ATGAATGAAGATCATTACTAG-TTCCGTG-TTGTCTCATTTGAGGCATAAACACAAACTTTACAA
259 ATGAATGAAGATCATTACTAGAATCCATGTTTGTCTAATTTGAGGCACGAACTTAAACTTTACAA
* * * *
3854299 AAATTGAAG-GGAAAAGAGCCTTTTTTTGCGAAACCAAAGCATCATTATGATGAATTCTAATGAG
324 AAATT--AGTGGAAAAAAGCC--TTTTTACGAAACCAAAGCATCAATATGATGAATCCTAATGAG
* * * * * *
3854363 AAGACTATGTTTATTGTGCCTAATCTTCAAAAGAATGGGGATTAGTATAAGTATTCACGTTTATC
385 AAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTC
* * *
3854428 TTATTTAAGAACCAAACTTTGATTCTATAAAAAACGGTGGAAGGAAAAGCTTTTCTTGC-AGCAC
450 TTATTTAAGAAACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGA-CAC
* * * * * * * * *
3854492 CAAGGCATGAATGTCATGTATGCTA-AAGAAGAGAGTGTGTTTTGGCTTCCCAATCTTAAAAAGA
514 CAAAGCATCAATTTCATGTATCCTATTA-AAGGGAATGTGTTTTGGCTTCCAAATCTTGAAAAGA
* * * * * ** * * * *
3854556 ATGGAGACTGTTACGGGAGTCGATGCTTATCTTATTTAAGGGATGGACTTTGATTTAAAGGAAAT
578 ATAGAGACTATTACAGGAATCGATGCTTGTCTTATTTAAGGGATAAACATTGATTTAATGAAAAA
* * * *
3854621 TATGG-TAAGGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCTTAAAGAGGAGA
643 TAAGGCGAA-GAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAAGAGGAGA
* * * * *
3854685 ATGTGTTTATAGTGCCTAATCACGAAAA-GAATGAACACCATTAGTAGAATCCTTGTTTGTCTCA
707 ATGTGTTTATAGTACCTAATCAC-AAAATGAAGGAAGATCATTAGTAGAATCCATGTTTGTCTCA
* * * *
3854749 TTTAAGGCACAAACTTAGACTTTAGAGAAATTAGT-GGAAAAAAGCCTTTCTCGCGA-ATCCGAA
771 TTTGAGGCACAAACTTAGACTTTACAAAAATTAGTGGGAAAAAAGCCTTTCTTGCGAGA-CC-AA
* * *
3854812 TA-ATCAATATGATGTATCTTAATGAGAAGACTATGTTTCTGGTGCCTAATCC-T-AAAAAGAAT
834 AAGATCAATATGATGTATCCTAATGAGAAGACTATGTTTGTGGTGCCTAA-CCTTGAAAAA-AAT
* *
3854874 AGGGATTAGTATGAGTATTAATGTTTGTCTTATTTAAGAAACAATA-TTTGATTCT
897 GGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAAACAA-ACTTTGATTCT
* *
3854929 AT-AAAAA-ATGATGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATGAATGTCGTGTATCCTA
1 ATCAAAAACA-GATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATGAATGTCATGTATCCTA
* * ** * * * * * *
3854992 TTGAAGGGAATGTGTTTTTCCTTCCTAATCTTAAAAAGAATGGAGAATGTTATGGGAATCAATGC
65 ATGAAAGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGC
* ** * *
3855057 TTGTCTTATTGAAAAGATGAACTTTGATTTAAAGGAAAATAGGGCAAGGAAAAGATTTCTACGCA
130 TTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCACGCA
3855122 AAA-AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAA
195 AAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAA
** * * * ** *
3855186 AAAATGAACACCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGGCTTTGCAAA
260 TGAATGAAGATCATTACTAGAATCCATGTTTGTCTAATTTGAGGCACGAACTTAAACTTTACAAA
* * * *
3855251 AATTAGTGGAAAAAAGCCTTTCTTACGAAACTAAAGCATCAATATGATGTATCTTAATGATAAGA
325 AATTAGTGGAAAAAAGCCTTT-TTACGAAACCAAAGCATCAATATGATGAATCCTAATGAGAAGA
* * * * * *
3855316 GTATGTTTATGGTGCCTAATTCTAAAAAGAATGAGGATTAGTATGAGTATTAATGTTTGACTTAT
389 CTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTAT
* * * * *
3855381 TTAA-AAGATAAACTTTTATTCCATCAAAAACGCTGGAAAGAAAAGCTTTTCTTGCGACACTAAA
454 TTAAGAA-ACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAA
* *
3855445 GCATCAATTTCTTGTATCCTATTAAAGGGAATGTGTTTTGGCTTCCAAAT-TATGAAAAGAATGG
518 GCATCAATTTCATGTATCCTATTAAAGGGAATGTGTTTTGGCTTCCAAATCT-TGAAAAGAATAG
* * * * *
3855509 AGACTATTATAGGAATCAATGCTTATCTTATTTAAGGGATGAACATTGATTTCATGAAAAATAAG
582 AGACTATTACAGGAATCGATGCTTGTCTTATTTAAGGGATAAACATTGATTTAATGAAAAATAAG
* * * * *
3855574 GCGAAGAAAAGATTTCCGTACAAAA-AAATTTCATCATTATCATTTATCCTAAAGAGGAAAATGT
647 GCGAAGAAAAGATTTCCATGCAAAAGAAA-ATCATCAATATCATTTATCCTAAAGAGGAGAATGT
* * * * * *
3855638 GTTTATTGTACCTAATCACAAAATGAGGGAAGATCATTAGTGGAATCTATGTTTGTTTCTTTTGA
711 GTTTATAGTACCTAATCACAAAATGAAGGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGA
* * * *
3855703 GGCACGAACTTAGACTTTACGAAAATTGGTGGGAAAAATGCCTTTCTTGCGAGACCAAAAGATCA
776 GGCACAAACTTAGACTTTACAAAAATTAGTGGGAAAAAAGCCTTTCTTGCGAGACCAAAAGATCA
* * *
3855768 ATATCG-TGTATCCTAATGAGAAGACAATGTTTGTGGTGTCTAACCTTGAAAAAAATGGGGAGTA
841 ATAT-GATGTATCCTAATGAGAAGACTATGTTTGTGGTGCCTAACCTTGAAAAAAATGGGGATTA
* * * * **
3855832 GTATGAATATTCATGTTTGTCTAATTTAGGAGACAAACTTCAATTCT
905 GTATGAGTATTCATGTTTGTCTTATTTAAGAAACAAACTTTGATTCT
* *
3855879 ATCAAAAACAG-TGGAAAGAAAAGCTTGTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAA
1 ATCAAAAACAGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATGAATGTCATGTATCCTAA
** * *
3855943 TGAAAGGAATGCATTTTGGCTTCCCAATCTTGAAATA-AATGGAGATTGTTACAAGAATCGATGC
66 TGAAAGGAATGTGTTTTGGCTTCCCAATCTTGAAA-AGAATGGAGACTGTTACGAGAATCGATGC
* **
3856007 TTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAAGGCAAAGAAAAGATTTTTACGCA
130 TTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCACGCA
* *
3856072 AAAGAAAATCATCAATATCATTTAACCTAATGAGGTGAATGTGTTTATAGTGCCTAATCACAAAA
195 AAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAA
* *
3856137 TGAATGAAGATCATTACTAGAATCCATGTTTG-CTTAATTTCAGGCACGAACCTAAACTTTACAA
260 TGAATGAAGATCATTACTAGAATCCATGTTTGTC-TAATTTGAGGCACGAACTTAAACTTTACAA
* * * * *
3856201 AAATTAGTTGGAAAAAAGCCTTTCTTATGGAACCAAAGCTTCAATACGGTGAATCCTAATGAGAA
324 AAATTAG-TGGAAAAAAGCCTTT-TTACGAAACCAAAGCATCAATATGATGAATCCTAATGAGAA
* * * *
3856266 GACTATGTTTATGCTGCCTAATCCTGAAAA-AATGGGGATTAGCATGAGTATTCATATTTGTCAT
387 GACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTT
*
3856330 ATTTAAGAAACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAA
452 ATTTAAGAAACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAA
* * * * * *
3856395 AGCATCAATGTCATGTATCCTACTGAAGGGAATATATTTTGGCTTCCCAATCTTGAAAAGAATAG
517 AGCATCAATTTCATGTATCCTATTAAAGGGAATGTGTTTTGGCTTCCAAATCTTGAAAAGAATAG
* * * * * *
3856460 AGACTATTACAAGAATTGATGCTTCTCTTATTTAAGGGATAAACTTTGATTTAATGGAAAATAGG
582 AGACTATTACAGGAATCGATGCTTGTCTTATTTAAGGGATAAACATTGATTTAATGAAAAATAAG
* * * * * * * * **
3856525 GCAAAGAAAAGATTTTCATGCAAAAAAAAATCAGCAAAATCGTTTATTCTAATGAGTTGAATGTG
647 GCGAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAAGAGGAGAATGTG
* * * * * * * *
3856590 TTTATAGTGCCTAACCAAAAAAAGAATGAAGATCATTACTAG-TTCCATGTTTGTCTCATTTGAA
712 TTTATAGTACCTAATCACAAAATGAAGGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAG
* *
3856654 GCACAAACTTAAACTTTACAAAAATTAAT-GGAAAAAAGCCTTTCTTGCGA-ATCC-AAAGCATC
777 GCACAAACTTAGACTTTACAAAAATTAGTGGGAAAAAAGCCTTTCTTGCGAGA-CCAAAAG-ATC
* * * * *
3856716 AATATGATGTATCTTAATGAGAAGACTATATTTTTGGTGACTAATCC-T-AAAAAGAATGGGGTT
840 AATATGATGTATCCTAATGAGAAGACTATGTTTGTGGTGCCTAA-CCTTGAAAAA-AATGGGGAT
* * * *
3856779 TAGTATGAGTATTCATTTTTGTCTTACTTAAGAAACAATCTTTGTTTCT
903 TAGTATGAGTATTCATGTTTGTCTTATTTAAGAAACAAACTTTGATTCT
* **
3856828 AT-AAAAAC-GATGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCAAAAATGTCATGTATCCTAA
1 ATCAAAAACAGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATGAATGTCATGTATCCTAA
* * * * *
3856891 TG-AAGAGAATATGTTTTTGG-TTCCCAATGTTGAAAACAAAGGAGACTGTTACGAGAATTGATG
66 TGAAAG-GAATGTG-TTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATG
* * * * *
3856954 CTTGTCTTATTTAAGGTATAAACTTTGATCTT--AGAAAAATAGGGCAAAGAAGAGATTTCCATG
129 CTTGTCTTATTTAAGGGATGAACTTTGAT-TTAAAGGAAAATAGGGCAAAGAAAAGATTTCCACG
* * * * * * *
3857017 CAATAGCAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTGTAATGCCTAATAAGAA
193 CAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAA
* * * * * *
3857082 AATGAATGAAG-GCCTTATTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAAA
258 AATGAATGAAGATCATTACTAGAATCCATGTTTGTCTAATTTGAGGCACGAACTTAAACTTTACA
* * * * * *
3857146 AAAATTGGTGGAAAAAAGCCATTTTTTCGATACCAAAGCATCAGTATGATGTATCCTAATAAGAA
323 AAAATTAGTGGAAAAAAGCC-TTTTTACGAAACCAAAGCATCAATATGATGAATCCTAATGAGAA
* * * *
3857211 GACTATGTTTATGGTGCCTAATCCAGAAAAGAATAGGGATTAGAATAAGTATTCATGTTT-TCCT
387 GACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGT-CT
* * * * *
3857275 TATTTAAGAAACAAACATTGATTCTGTCAAAAACGGTAGAAGGAAAAGCTTTTCTTGCGACACTA
451 TATTTAAGAAACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCA
*
3857340 AAGCATCAATTTCTTGTATCCTATTAAAGGGAATGTGTTTTGGCTTCCAAAT-TATGAAAAGAAT
516 AAGCATCAATTTCATGTATCCTATTAAAGGGAATGTGTTTTGGCTTCCAAATCT-TGAAAAGAAT
* * * * *
3857404 AGAAACTGTTATAGGAATCGATGCTTGTCTTACTTAAGGGATAAACATTGATTTTATGAAAAATA
580 AGAGACTATTACAGGAATCGATGCTTGTCTTATTTAAGGGATAAACATTGATTTAATGAAAAATA
*** * *
3857469 AGGCGAAGAAAAGATTTTTGTACAAAAGAAAATCATCAATATCATTTATCCTAAAGAGGAAAATG
645 AGGCGAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAAGAGGAGAATG
* * * * * *
3857534 TGTTTATTGTACCTAATCAAAAAATGAGGGAAGATCATTAGTGGAATCTATGTTTGTCTCTTTTG
710 TGTTTATAGTACCTAATCACAAAATGAAGGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTG
* * * * *
3857599 AGGCACGAACTTAGACTTTACGAAAATT-GGGGGGAAAATGCCTTTCTTGCGAGACCAAAAGATC
775 AGGCACAAACTTAGACTTTACAAAAATTAGTGGGAAAAAAGCCTTTCTTGCGAGACCAAAAGATC
* * * * *
3857663 AATATCATGTATCCCAATGAGAAGACAATGTTTGTGGTGCCTATCCTTGAAAAAAATGGAGATTA
840 AATATGATGTATCCTAATGAGAAGACTATGTTTGTGGTGCCTAACCTTGAAAAAAATGGGGATTA
* * * * * * ** *
3857728 GTATGAATATTCATGTCTGTCTAACTTAGGAGACAAACTTCAATTCC
905 GTATGAGTATTCATGTTTGTCTTATTTAAGAAACAAACTTTGATTCT
* ** * *
3857775 ATCAAAAATAG-TGGAAAGAAAAGCTTTTCTTGTAACACCAAAGCATGAATGTCATGTCTCTTAA
1 ATCAAAAACAGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATGAATGTCATGTATCCTAA
* * * * * *
3857839 T-AAAGGGAATGTGTTTTGGCTTCCTAATCTTGAAATGAATAGAGATTGCTACAAGAATCGATGC
66 TGAAA-GGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGC
* * *
3857903 TTGTCTTATTTAAGGGATAAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCTACGGA
130 TTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCACGCA
* * *
3857968 AAAGAAAATCATCAATATCATTTATCCTAATGACGTGAATGTGTTTATAGTGCCTAATCCCAAAA
195 AAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAA
* * * *
3858033 TGAATGAAGATCAGTACTAGAATCCATTTTTG-CTTAATTTGAGGCAC-AGACATAAACTTTGCA
260 TGAATGAAGATCATTACTAGAATCCATGTTTGTC-TAATTTGAGGCACGA-ACTTAAACTTTACA
* * * *
3858096 AAAATTAGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCTTCAATATGGTGAATCTTAATGAGA
323 AAAATTAGT-GGAAAAAAGCCTTT-TTACGAAACCAAAGCATCAATATGATGAATCCTAATGAGA
* * ** * *
3858161 AGAATATGTTTATGGTGCCTAATCCTGAAAAGAATGGGCATCGGCATGAGTATTCATGTTGGTCT
386 AGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCT
*
3858226 TATTTAAGAAACAAACTTTGATTCTATCAACAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCA
451 TATTTAAGAAACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCA
* * * * *
3858291 AAGCATC-ATTGTCATGTATCCTACTGAAGGGATTATGTTTTGGCTTCCCAATCTTGAAAAGAAT
516 AAGCATCAATT-TCATGTATCCTATTAAAGGGAATGTGTTTTGGCTTCCAAATCTTGAAAAGAAT
* * * ** * *
3858355 AAAGACTATTACAAGAATCGATGCGTGGATTATTTAAGGGATAAACTTTGATTTAACGAAAAATA
580 AGAGACTATTACAGGAATCGATGCTTGTCTTATTTAAGGGATAAACATTGATTTAATGAAAAATA
* * * * * **
3858420 GGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAAAATCATTTATTCTAATGAGTTGAATG
645 AGGCGAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAAGAGGAGAATG
* * * * * *
3858485 TCTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTACTAG-TTCCATGTTTGTCTCATTTG
710 TGTTTATAGTACCTAATCACAAAATGAAGGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTG
* * *
3858549 AAGCACAAACTTAGACTTTACAAAAATTAGTGAGAAAAAAGCCTTTCTTGCGAAACC-AAAGCAT
775 AGGCACAAACTTAGACTTTACAAAAATTAGTGGGAAAAAAGCCTTTCTTGCGAGACCAAAAG-AT
* * * * *
3858613 CAATATGATGAATCCTAATGAGACGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATT
839 CAATATGATGTATCCTAATGAGAAGACTATGTTTGTGGTGCCTAACCTTGAAAAAAATGGGGATT
* *
3858678 GGTATGAGTATTCATGTTTGTCTTATTTATGAAACAAACTTTGATTCT
904 AGTATGAGTATTCATGTTTGTCTTATTTAAGAAACAAACTTTGATTCT
** * * * * * * * *
3858726 ATTGAAAA-TGGTGGAAAGAAAAGCTTTTCTTGGGACACCAAAGCTTTAATGCCTTGTATCCTGA
1 ATCAAAAACAGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATGAATGTCATGTATCCTAA
* * * ** ** * *
3858790 TAAAAGGAGTGTGTTTTGGCTTCCCAATCTTGAAAGGAATGGAGACTACTACTTGATTTGATGCT
66 TGAAAGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCT
* * * * * * * *
3858855 TATCTTATTT-A---A-GAACTTTAATTTTATGTAAAATAGGACAAATAAAAGATTTCCATGCAA
131 TGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCACGCAA
* * * * *
3858915 TAA-AAAATCATCAATATCAATTATCCTAATGAGGAGATTGTGTATATAGTGCCTAATAACAAAG
196 -AAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAA
* * * * *
3858979 TGAATGAAGATC-TTAGTAGAATCCATGTTTGCCTAATTTGAGACACGAACTTAGACTTTATAAA
260 TGAATGAAGATCATTACTAGAATCCATGTTTGTCTAATTTGAGGCACGAACTTAAACTTTACAAA
* * *
3859043 AATT-G-GCAAGAAAAAGCCCTTTTTACGAAAACAAAGCATCAATATGATGTATCCTAATGAGAA
325 AATTAGTG-GA-AAAAAG-CCTTTTTACGAAACCAAAGCATCAATATGATGAATCCTAATGAGAA
* * * *** * *
3859106 GACCATGTTTATGGTGCCTATTCCTGAAAGGAATAAAGATTAGTATGAGTATTCGTGTTTGCCTT
387 GACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTT
* *
3859171 ATTTAAGAAACAAACTTTGATTCTATC-AAAACGGTGAAAAGAAAAGCTTTTCTTGTGACACCAA
452 ATTTAAGAAACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAA
** * * * *
3859235 AGCAAAAATTTGATATATCCTATTGAAGGGAATGCGTTTTGGCTTCCAAATCTTGAAAAGAATAG
517 AGCATCAATTTCATGTATCCTATTAAAGGGAATGTGTTTTGGCTTCCAAATCTTGAAAAGAATAG
* * * * * *
3859300 AGACTATTACAGGAATTGATGCTTGTCTTATTTAAGAGATGAACATTGATTTTACGGAAAATAAG
582 AGACTATTACAGGAATCGATGCTTGTCTTATTTAAGGGATAAACATTGATTTAATGAAAAATAAG
* * *
3859365 GCGAAGAAAAGATTTCCGTGCAAAAGAAAATTATCAATATCATTTA---T-----GCAGAATGTG
647 GCGAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAAGAGGAGAATGTG
* * * * *
3859422 TTTATTA-TACCTAATCACAAAATGAGGGAAGATCATTAGTGGGATCCATGTTTGTCTCGTTTGG
712 TTTA-TAGTACCTAATCACAAAATGAAGGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGA
** * * * * * *
3859486 GGCACAATTTTAGACTTTACAAAAATTAGTCGGAAAAATGTCTTTTTTGCAAGACCAAAACATCA
776 GGCACAAACTTAGACTTTACAAAAATTAGTGGGAAAAAAGCCTTTCTTGCGAGACCAAAAGATCA
*
3859551 ATATCATGTATCCTA
841 ATATGATGTATCCTA
3859566 GCTGTAGACA
Statistics
Matches: 3912, Mismatches: 644, Indels: 176
0.83 0.14 0.04
Matches are distributed among these distances:
935 40 0.01
936 83 0.02
937 3 0.00
940 1 0.00
942 1 0.00
943 182 0.05
944 123 0.03
945 122 0.03
946 442 0.11
947 258 0.07
948 284 0.07
949 665 0.17
950 606 0.15
951 1016 0.26
952 86 0.02
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (951 bp):
ATCAAAAACAGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATGAATGTCATGTATCCTAA
TGAAAGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCT
TGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCACGCAA
AAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAT
GAATGAAGATCATTACTAGAATCCATGTTTGTCTAATTTGAGGCACGAACTTAAACTTTACAAAA
ATTAGTGGAAAAAAGCCTTTTTACGAAACCAAAGCATCAATATGATGAATCCTAATGAGAAGACT
ATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTT
AAGAAACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
TCAATTTCATGTATCCTATTAAAGGGAATGTGTTTTGGCTTCCAAATCTTGAAAAGAATAGAGAC
TATTACAGGAATCGATGCTTGTCTTATTTAAGGGATAAACATTGATTTAATGAAAAATAAGGCGA
AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAAGAGGAGAATGTGTTTA
TAGTACCTAATCACAAAATGAAGGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCAC
AAACTTAGACTTTACAAAAATTAGTGGGAAAAAAGCCTTTCTTGCGAGACCAAAAGATCAATATG
ATGTATCCTAATGAGAAGACTATGTTTGTGGTGCCTAACCTTGAAAAAAATGGGGATTAGTATGA
GTATTCATGTTTGTCTTATTTAAGAAACAAACTTTGATTCT
Found at i:3856415 original size:158 final size:159
Alignment explanation
Indices: 3854318--3859238 Score: 1259
Period size: 159 Copynumber: 31.1 Consensus size: 159
3854308 GGAAAAGAGC
* * * * * * * *
3854318 CTTTTTTTGCGAAACCAAAGCATCATTATGATGAATTCTAATGAGAAGACTATGTTTATTGTGCC
1 CTTTTCTTGCGACACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATATGTTTATGGTGCC
* * * * * *
3854383 TAATCTTCAAAAGAATGGGGATTAGTATAAGTATTCACGTTTATCTTATTTAAGAACCAAACTTT
66 TAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAAACAAACTTT
* * *
3854448 GATTCTATAAAAAACGGTGGAAGGAAAAG
131 GATTCTATCAAAAATGGTGGAAAGAAAAG
* * * * *
3854477 CTTTTCTTGC-AGCACCAAGGCATGAATGTCATGTATGCTAA--AGAAGAGAGTGTGTTT-TGGC
1 CTTTTCTTGCGA-CACCAAAGCATCAATATCATGTATCCTAATGAGAAGA-A-TATGTTTATGG-
* * * * * * * * * * * ** **
3854538 TTCCCAATCTTAAAAAGAATGGAGACT-GTTACG-GGAGTCGATGCTTATCTTATTTAAGGGATG
62 TGCCTAATCCTGAAAAGAATGGGGATTAG-TATGAGTATTC-ATGTTTGTCTTATTTAAGAAACA
* ** *
3854601 GACTTTGATT-TA--AAGGAAATTATGGTAAGGAAAAG
125 AACTTTGATTCTATCAA--AAATGGTGG-AAAGAAAAG
* * * * ** * * * * * * *
3854636 ATTTTCATGCAAAAGAAAATCATCAATATCATTTATCTTAAAGAGGAGAATGTGTTTATAGTGCC
1 CTTTTCTTGCGACACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATATGTTTATGGTGCC
*** * * * **
3854701 TAATCAC-GAAAAGAATGAACACCATTAGTA-GA--ATCCTTGTTTGTCTCATTTAAGGCACAAA
66 TAATC-CTGAAAAGAATG---GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAAACAAA
* * * *
3854762 CTTAGACTT-TA-GAGAAATTAGTGG-AA-AAAAG
127 CTTTGA-TTCTATCA-AAAATGGTGGAAAGAAAAG
* * * ** * * * *
3854793 CCTTTCTCGCGA-ATCCGAATAATCAATATGATGTATCTTAATGAGAAGACTATGTTTCTGGTGC
1 CTTTTCTTGCGACA-CCAAAGCATCAATATCATGTATCCTAATGAGAAGAATATGTTTATGGTGC
* * *
3854857 CTAATCCTAAAAAGAATAGGGATTAGTATGAGTATTAATGTTTGTCTTATTTAAGAAACAATA-T
65 CTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAAACAA-ACT
* *
3854921 TTGATTCTATAAAAAATGATGGAAAGAAAAG
129 TTGATTCTATCAAAAATGGTGGAAAGAAAAG
* * * * * * * * ** *
3854952 CTTTTCTTGCGAAACCAAAGCATGAATGTCGTGTATCCTATTGA-AGGGAATGTGTTTTTCCTTC
1 CTTTTCTTGCGACACCAAAGCATCAATATCATGTATCCTAATGAGA-AGAATATGTTTATGGTGC
* * * * * * * * **
3855016 CTAATCTTAAAAAGAATGGAGAAT-GTTATG-GGAATCAATGCTTGTCTTATTGAA-AAGATGAA
65 CTAATCCTGAAAAGAATGGGGATTAG-TATGAGTATTC-ATGTTTGTCTTATTTAAGAA-ACAAA
* * *
3855078 CTTTGATT-TA-AAGGAAAATAGG-GCAAGGAAAAG
127 CTTTGATTCTATCA--AAAAT-GGTGGAAAGAAAAG
* * * ** * * * * *
3855111 -ATTTC-TACGCAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
1 CTTTTCTTGCG-ACACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATATGTTTATGGTGC
* * *** ** * * * * * ** *
3855174 CTAATCAC-AAAAAAAATGAACACCATTACT-AGAATCCATGTTTGTCTCATTTGAGGCACGAAC
65 CTAATC-CTGAAAAGAATGGGGATTAGTA-TGAGTATTCATGTTTGTCTTATTTAAGAAACAAAC
* * * *
3855237 TTAGGCTT-T-GCAAAAATTAGTGG-AA-AAAAG
128 TT-TGATTCTATCAAAAA-TGGTGGAAAGAAAAG
* * * * * * * *
3855267 CCTTTCTTACGAAACTAAAGCATCAATATGATGTATCTTAATGATAAGAGTATGTTTATGGTGCC
1 CTTTTCTTGCGACACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATATGTTTATGGTGCC
* * * * * *
3855332 TAATTCTAAAAAGAATGAGGATTAGTATGAGTATTAATGTTTGACTTATTTAA-AAGATAAACTT
66 TAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAA-ACAAACTT
* * * *
3855396 TTATTCCATCAAAAACGCTGGAAAGAAAAG
130 TGATTCTATCAAAAATGGTGGAAAGAAAAG
* * * * *
3855426 CTTTTCTTGCGACACTAAAGCATCAATTTCTTGTATCCT-ATTA-AAGGGAATGTGTTT-TGGCT
1 CTTTTCTTGCGACACCAAAGCATCAATATCATGTATCCTAATGAGAA--GAATATGTTTATGG-T
* * ** * * * * * * * ** **
3855488 TCCAAATTATGAAAAGAATGGAGACTATTAT-AGGAATCAATGCTTATCTTATTTAAGGGATGAA
63 GCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTC-ATGTTTGTCTTATTTAAGAAACAAA
* * *
3855552 CATTGATT-TCATGAAAAATAAGG-CG-AAGAAAAG
127 CTTTGATTCT-ATCAAAAAT--GGTGGAAAGAAAAG
* * * * ** * * * * * *
3855585 ATTTCCGTAC-A-AAAAAATTTCATCATTATCATTTATCCTAAAGAGGAA-AATGTGTTTATTGT
1 CTTTTCTTGCGACACCAAA--GCATCAATATCATGTATCCTAATGA-GAAGAATATGTTTATGGT
* * * * * * *
3855647 ACCTAAT-C--ACAA-AATGAGGGA--AGATCATTAGTGGAATCTATGTTTGT-TTCTTTTGAGG
63 GCCTAATCCTGAAAAGAATG-GGGATTAG-T-ATGAGT--ATTC-ATGTTTGTCTT-ATTTAAGA
* * * * * *
3855705 CACGAACTTAGACTT-TA-CGAAAATTGGTGGGAA-AAATG
121 AACAAACTTTGA-TTCTATC-AAAAATGGTGGAAAGAAAAG
* * * *
3855743 CCTTTCTTGCGAGACCAAAAG-ATCAATATCGTGTATCCTAATGAGAAGACA-ATGTTTGTGGTG
1 CTTTTCTTGCGACACC-AAAGCATCAATATCATGTATCCTAATGAGAAGA-ATATGTTTATGGTG
* * * * * * *
3855806 TCTAA-CCTTGAAAAAAATGGGGAGTAGTATGAATATTCATGTTTGTCTAATTTAGGAGACAAAC
64 CCTAATCC-TGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAAACAAAC
** **
3855870 TTCAATTCTATCAAAAACAGTGGAAAGAAAAG
128 TTTGATTCTATCAAAAATGGTGGAAAGAAAAG
* * *
3855902 CTTGTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGA-AAGGA-ATGCATTT-TGGCT
1 CTTTTCTTGCGACACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATATG--TTTATGG-T
* * * * ** * * ** **
3855964 TCCCAATCTTGAAATA-AATGGAGATT-GTTACAAG-AATCGATGCTTGTCTTATTTAAGGGATG
63 GCCTAATCCTGAAA-AGAATGGGGATTAG-TATGAGTATTC-ATGTTTGTCTTATTTAAGAAACA
* * *
3856026 AACTTTGATT-TA-AAGGAAAATAAG-GCAAAGAAAAG
125 AACTTTGATTCTATCA--AAAAT-GGTGGAAAGAAAAG
* * * * ** * * * ** * *
3856061 ATTTT-TACGCAAAAGAAAATCATCAATATCATTTAACCTAATGAGGTGAATGTGTTTATAGTGC
1 CTTTTCT-TGCGACACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATATGTTTATGGTGC
** * * * * * ** *
3856125 CTAATCAC--AAAATGAATGAAGATCATTACT-AGAATCCATGTTTG-CTTAATTTCAGGCACGA
65 CTAATC-CTGAAAA-GAATGGGGATTAGTA-TGAGTATTCATGTTTGTCTT-ATTTAAGAAACAA
* ** *
3856186 ACCTAAACTT-TA-CAAAAATTAGTTGG-AA-AAAAG
126 ACTTTGA-TTCTATCAAAAA-T-GGTGGAAAGAAAAG
* * * * * *
3856219 CCTTTCTTATG-GA-ACCAAAGCTTCAATA-CGGTGAATCCTAATGAGAAGACTATGTTTATGCT
1 CTTTTC-T-TGCGACACCAAAGCATCAATATC-ATGTATCCTAATGAGAAGAATATGTTTATGGT
* * *
3856281 GCCTAATCCTGAAAA-AATGGGGATTAGCATGAGTATTCATATTTGTCATATTTAAGAAACAAAC
63 GCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAAACAAAC
3856345 TTTGATTCTATCAAAAATGGTGGAAAGAAAAG
128 TTTGATTCTATCAAAAATGGTGGAAAGAAAAG
* * * * *
3856377 CTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTACTGA-AGGGAATATATTT-TGGCTT
1 CTTTTCTTGCGACACCAAAGCATCAATATCATGTATCCTAATGAGA-AGAATATGTTTATGG-TG
* * * * * * ** * * * * ** *
3856440 CCCAATCTTGAAAAGAATAGAGACTATTACAAGAATTGATGCTTCTCTTATTTAAGGGATAAACT
64 CCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAAACAAACT
** *
3856505 TTGATT-TAATGGAAAATAGG-GCAAAGAAAAG
129 TTGATTCT-ATCAAAAAT-GGTGGAAAGAAAAG
* * * * ** * * * * * * ** * *
3856536 ATTTTCATGCAAAAAAAAATCAGCAAAATCGTTTATTCTAATGAGTTGAATGTGTTTATAGTGCC
1 CTTTTCTTGCGACACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATATGTTTATGGTGCC
** ** * * * * *
3856601 TAA-CCAAAAAAAGAATGAAGATCATTACT-AGT-TCCATGTTTGTCTCATTTGAAG-CACAAAC
66 TAATCC-TGAAAAGAATGGGGATTAGTA-TGAGTATTCATGTTTGTCTTATTT-AAGAAACAAAC
** **
3856662 TTAAACTT-TA-CAAAAATTAATGG-AA-AAAAG
128 TTTGA-TTCTATCAAAAA-TGGTGGAAAGAAAAG
* * * * * * *
3856692 CCTTTCTTGCGA-ATCCAAAGCATCAATATGATGTATCTTAATGAGAAGACTATATTTTTGGTGA
1 CTTTTCTTGCGACA-CCAAAGCATCAATATCATGTATCCTAATGAGAAGAATATGTTTATGGTGC
* * * * *
3856756 CTAATCCTAAAAAGAATGGGGTTTAGTATGAGTATTCATTTTTGTCTTACTTAAGAAACAATCTT
65 CTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAAACAAACTT
* * *
3856821 TGTTTCTAT-AAAAACGATGGAAAGAAAAG
130 TGATTCTATCAAAAATGGTGGAAAGAAAAG
* ** * * *
3856850 CTTTTCTTGCAACACCAAAGCAAAAATGTCATGTATCCTAATGA-AGAGAATATGTTTTTGGTTC
1 CTTTTCTTGCGACACCAAAGCATCAATATCATGTATCCTAATGAGA-AGAATATGTTTATGGTGC
* ** * * * * * * * * ** *
3856914 CCAATGTTGAAAACAAAGGAGACT-GTTACGAGAATTGATGCTTGTCTTATTTAAGGTATAAACT
65 CTAATCCTGAAAAGAATGGGGATTAG-TATGAGTATTCATGTTTGTCTTATTTAAGAAACAAACT
* * *
3856978 TTGA-TCT-TAGAAAAATAGG-GCAAAGAAGAG
129 TTGATTCTAT-CAAAAAT-GGTGGAAAGAAAAG
* * * * * * * * * * * * **
3857008 ATTTCCATGCAATAGCAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGTTTGTAATGCC
1 CTTTTCTTGCGACACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATATGTTTATGGTGCC
** ** * * * * ** *
3857073 TAAT-AAGAAAATGAATGAAGGCCTTA-T-T-AGAATCCATGTTTGTCTCATTTGAGGCACGAAC
66 TAATCCTGAAAA-GAATG--GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAAACAAAC
* *
3857134 TTAGACTT-TA-AAAAAATTGGTGG-AA-AAAAG
128 TTTGA-TTCTATCAAAAA-TGGTGGAAAGAAAAG
* * * * *
3857164 CCATTTT-TT-CGATACCAAAGCATCAGTATGATGTATCCTAATAAGAAGACTATGTTTATGGTG
1 -C-TTTTCTTGCGACACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATATGTTTATGGTG
* * * *
3857227 CCTAATCCAGAAAAGAATAGGGATTAGAATAAGTATTCATGTTT-TCCTTATTTAAGAAACAAAC
64 CCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGT-CTTATTTAAGAAACAAAC
* * * * *
3857291 ATTGATTCTGTCAAAAACGGTAGAAGGAAAAG
128 TTTGATTCTATCAAAAATGGTGGAAAGAAAAG
* * * * *
3857323 CTTTTCTTGCGACACTAAAGCATCAATTTCTTGTATCCT-ATTA-AAGGGAATGTGTTT-TGGCT
1 CTTTTCTTGCGACACCAAAGCATCAATATCATGTATCCTAATGAGAA--GAATATGTTTATGG-T
* * ** * ** * * * * * ** *
3857385 TCCAAATTATGAAAAGAATAGAAACT-GTTAT-AGGAATCGATGCTTGTCTTACTTAAGGGATAA
63 GCCTAATCCTGAAAAGAATGGGGATTAG-TATGAGTATTC-ATGTTTGTCTTATTTAAGAAACAA
* * * *
3857448 ACATTGATTTTATGAAAAATAAGG-CG-AAGAAAAG
126 ACTTTGATTCTATCAAAAAT--GGTGGAAAGAAAAG
* * * * ** * * * * * *
3857482 ATTTT-TGTACAAAAGAAAATCATCAATATCATTTATCCTAAAGAGGAA-AATGTGTTTATTGTA
1 CTTTTCT-TGCGACACCAAAGCATCAATATCATGTATCCTAATGA-GAAGAATATGTTTATGGTG
* * * **
3857545 CCTAAT-C--AAAA-AATGAGGGA--AGATCATTAGTGGAATCTATGTTTGTCTCT-TTTGAGGC
64 CCTAATCCTGAAAAGAATG-GGGATTAG-T-ATGAGT--ATTC-ATGTTTGTCT-TATTTAAGAA
* * * *
3857603 ACGAACTTAGACTT-TA-CGAAAATTGG-GG--GGAAAATG
122 ACAAACTTTGA-TTCTATC-AAAAATGGTGGAAAGAAAA-G
* * * *
3857639 CCTTTCTTGCGAGACCAAAAG-ATCAATATCATGTATCCCAATGAGAAGACA-ATGTTTGTGGTG
1 CTTTTCTTGCGACACC-AAAGCATCAATATCATGTATCCTAATGAGAAGA-ATATGTTTATGGTG
* * * * * * * *
3857702 CCT-ATCCTTGAAAAAAATGGAGATTAGTATGAATATTCATGTCTGTCTAACTTAGGAGACAAAC
64 CCTAATCC-TGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAAACAAAC
** * *
3857766 TTCAATTCCATCAAAAATAGTGGAAAGAAAAG
128 TTTGATTCTATCAAAAATGGTGGAAAGAAAAG
** * * * * *
3857798 CTTTTCTTGTAACACCAAAGCATGAATGTCATGTCTCTTAAT-A-AAGGGAATGTGTTT-TGGCT
1 CTTTTCTTGCGACACCAAAGCATCAATATCATGTATCCTAATGAGAA--GAATATGTTTATGG-T
* * * * * ** * * ** *
3857860 TCCTAATCTTGAAATGAATAGAGATT-GCTACAAG-AATCGATGCTTGTCTTATTTAAGGGATAA
63 GCCTAATCCTGAAAAGAATGGGGATTAG-TATGAGTATTC-ATGTTTGTCTTATTTAAGAAACAA
* *
3857923 ACTTTGATT-TA-AAGGAAAATAGG-GCAAAGAAAAG
126 ACTTTGATTCTATCA--AAAAT-GGTGGAAAGAAAAG
* * * ** * * * * *
3857957 -ATTTC-TACGGAAAAGAAAATCATCAATATCATTTATCCTAATGACG-TGAATGTGTTTATAGT
1 CTTTTCTTGC-G-ACACCAAAGCATCAATATCATGTATCCTAATGA-GAAGAATATGTTTATGGT
* ** * * * * * **
3858019 GCCTAATCC-CAAAATGAATGAAGATCAGTACT-AGAATCCATTTTTG-CTTAATTTGAGGCACA
63 GCCTAATCCTGAAAA-GAATGGGGATTAGTA-TGAGTATTCATGTTTGTCTT-ATTTAAGAAACA
* * ** * * *
3858081 GACATAAACTT-T-GCAAAAATTAGTGGGAA-AAAAG
125 AACTTTGA-TTCTATCAAAAA-TGGTGGAAAGAAAAG
* * * ** * *
3858115 CCTTTCTTGCGAAACCAAAGCTTCAATATGGTGAATCTTAATGAGAAGAATATGTTTATGGTGCC
1 CTTTTCTTGCGACACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATATGTTTATGGTGCC
* ** * *
3858180 TAATCCTGAAAAGAATGGGCATCGGCATGAGTATTCATGTTGGTCTTATTTAAGAAACAAACTTT
66 TAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAAACAAACTTT
* *
3858245 GATTCTATCAACAACGGTGGAAAGAAAAG
131 GATTCTATCAAAAATGGTGGAAAGAAAAG
* * * * * *
3858274 CTTTTCTTGCGACACCAAAGCATCATTGTCATGTATCCTACTGA-AGGGATTATGTTT-TGGCTT
1 CTTTTCTTGCGACACCAAAGCATCAATATCATGTATCCTAATGAGA-AGAATATGTTTATGG-TG
* * *** * * ** * ** ** ** *
3858337 CCCAATCTTGAAAAGAATAAAGACTATTACAAG-AATCGATGCGTGGATTATTTAAGGGATAAAC
64 CCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTC-ATGTTTGTCTTATTTAAGAAACAAAC
* *
3858401 TTTGATT-TAACGAAAAATAGG-GCAAAGAAAAG
128 TTTGATTCTATC-AAAAAT-GGTGGAAAGAAAAG
* * * * * ** * * * * ** * * *
3858433 ATTTCCATGCAAAAGAAAATCATCAAAATCATTTATTCTAATGAGTTGAATGTCTTTATAGTGCC
1 CTTTTCTTGCGACACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATATGTTTATGGTGCC
* ** * * * * *
3858498 TAATCAC-AAAAAGAATGAAGATCATTACT-AGT-TCCATGTTTGTCTCATTTGAAG-CACAAAC
66 TAATC-CTGAAAAGAATGGGGATTAGTA-TGAGTATTCATGTTTGTCTTATTT-AAGAAACAAAC
* *
3858559 TTAGACTT-TA-CAAAAATTAGT-GAGAA-AAAAG
128 TTTGA-TTCTATCAAAAA-TGGTGGA-AAGAAAAG
* * * * * *
3858590 CCTTTCTTGCGAAACCAAAGCATCAATATGATGAATCCTAATGAGACGACTATGTTTATGGTGCC
1 CTTTTCTTGCGACACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATATGTTTATGGTGCC
* * *
3858655 TAATCTTGAAAAGAATGGGGATTGGTATGAGTATTCATGTTTGTCTTATTTATGAAACAAACTTT
66 TAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAAACAAACTTT
**
3858720 GATTCTATTGAAAATGGTGGAAAGAAAAG
131 GATTCTATCAAAAATGGTGGAAAGAAAAG
* * * ** * * * * * *
3858749 CTTTTCTTGGGACACCAAAGCTTTAATGCCTTGTATCCTGAT-AAAAGGAGTGTGTTT-TGGCTT
1 CTTTTCTTGCGACACCAAAGCATCAATATCATGTATCCTAATGAGAA-GAATATGTTTATGG-TG
* * * * * * * * *
3858812 CCCAATCTTGAAAGGAATGGAGACTACTACTTGA-T-TTGATGCTTATCTTATTTAAG-----AA
64 CCTAATCCTGAAAAGAATGGGGATTAGTA--TGAGTATTCATGTTTGTCTTATTTAAGAAACAAA
* * ** ** *
3858870 CTTTAATTTTATGTAAAATAGG-ACAAATAAAAG
127 CTTTGATTCTATCAAAAAT-GGTGGAAAGAAAAG
* * * * * ** * * * * * *
3858903 ATTTCCATGCAATAAAAAATCATCAATATCAAT-TATCCTAATGAGGAGATTGTGTATATAGTGC
1 CTTTTCTTGCGACACCAAAGCATCAATATC-ATGTATCCTAATGAGAAGAATATGTTTATGGTGC
* * ** * * * * * *
3858967 CTAATAAC--AAAGTGAATGAAGATCTTAGTA-GA--ATCCATGTTTGCCTAATTTGAGACACGA
65 CTAAT-CCTGAAA-AGAATGGGGA--TTAGTATGAGTATTCATGTTTGTCTTATTTAAGAAACAA
* *
3859027 ACTTAGACTT-TAT-AAAAAT--TGGCAAGAAAAAG
126 ACTTTGA-TTCTATCAAAAATGGTGGAAAG-AAAAG
* * * * * **
3859059 CCCTTT-TTACGAAAACAAAGCATCAATATGATGTATCCTAATGAGAAGACCATGTTTATGGTGC
1 -CTTTTCTTGCGACACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATATGTTTATGGTGC
* * *** * *
3859123 CTATTCCTGAAAGGAATAAAGATTAGTATGAGTATTCGTGTTTGCCTTATTTAAGAAACAAACTT
65 CTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAAACAAACTT
* *
3859188 TGATTCTATC-AAAACGGTGAAAAGAAAAG
130 TGATTCTATCAAAAATGGTGGAAAGAAAAG
*
3859217 CTTTTCTTGTGACACCAAAGCA
1 CTTTTCTTGCGACACCAAAGCA
3859239 AAAATTTGAT
Statistics
Matches: 3377, Mismatches: 1062, Indels: 647
0.66 0.21 0.13
Matches are distributed among these distances:
153 19 0.01
154 91 0.03
155 28 0.01
156 253 0.07
157 620 0.18
158 803 0.24
159 1412 0.42
160 98 0.03
161 34 0.01
162 16 0.00
163 3 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (159 bp):
CTTTTCTTGCGACACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATATGTTTATGGTGCC
TAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAAACAAACTTT
GATTCTATCAAAAATGGTGGAAAGAAAAG
Found at i:3860745 original size:94 final size:93
Alignment explanation
Indices: 3860620--3860854 Score: 353
Period size: 94 Copynumber: 2.5 Consensus size: 93
3860610 ATTCATTGGG
* *
3860620 ACTCCAACCCCATGCCTCCGAGGGGATACTCCAATCTCGTTTTTTAACTTGCCAAGATCATTCTT
1 ACTCCAA-CCCATTCCTCCGA-GGGATACTCCAACCTCGTTTTTTAACTTGCCAAGATCATTCTT
* *
3860685 ATTTTTACTTAAATTATCATTGTTAGGGAC
64 ATTTTTACCTAAATTATCATTGTCAGGGAC
** *
3860715 ACTCCAACCCATTCCTGTGAAGGGATACTCCAACCTCATTTTTTAACTTGCCAAGATCATTCTTA
1 ACTCCAACCCATTCCTCCG-AGGGATACTCCAACCTCGTTTTTTAACTTGCCAAGATCATTCTTA
*
3860780 TTTTTACCTAAATTATCATTGTCGGGGAC
65 TTTTTACCTAAATTATCATTGTCAGGGAC
*
3860809 ACTCCAACCCATTCCTCCGAGGAGATACTCCAACCCCGTTTTTTAA
1 ACTCCAACCCATTCCTCCGAGG-GATACTCCAACCTCGTTTTTTAA
3860855 TCAAAAATTG
Statistics
Matches: 126, Mismatches: 12, Indels: 5
0.88 0.08 0.03
Matches are distributed among these distances:
93 3 0.02
94 115 0.91
95 8 0.06
ACGTcount: A:0.26, C:0.28, G:0.13, T:0.34
Consensus pattern (93 bp):
ACTCCAACCCATTCCTCCGAGGGATACTCCAACCTCGTTTTTTAACTTGCCAAGATCATTCTTAT
TTTTACCTAAATTATCATTGTCAGGGAC
Found at i:3862941 original size:159 final size:159
Alignment explanation
Indices: 3862310--3862959 Score: 427
Period size: 159 Copynumber: 4.1 Consensus size: 159
3862300 GACACCAAAG
* * * *
3862310 CATGTATCCTACTGAAGGGAATATGTTT-TGGCTTCCCAATCTTGAAAAGAATAAAGACTATTAC
1 CATGTATCCTAATGAAAGGAATATGTTTATGGCTTCCCAATCTTGAAAAGAATGAAGACTAGTAC
* * *
3862374 GAGAATCGATACTTGTCGTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAG-GGCAAAGAAA
66 GAGAATCGATGCTTGTCTTATTTAAGGGACGAACTTTGATTTAAAGGAAAATAGTGG-AAAGAAA
* * *
3862438 AGATTTTTATGCAAAAGAAAATCATCAAAAT
130 AGATTTCT-TGCAAAACAAAATCATGAAAAT
* *** * * * * ** *
3862469 CATTTATCCTAATGAGTTGAATGTGTTTAT-ACTACCTAATC-ACAAAATGAATGAAGA-TCATT
1 CATGTATCCTAATGAAAGGAATATGTTTATGGCTTCCCAATCTTGAAAA-GAATGAAGACT-AGT
* * * * * * * * *
3862531 ACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACGTAGACTTTACAA--AAATTAGTGGGAAA
64 ACGAGAATCGATGCTTGTCTTATTTAAGGGACGAACTTTGA-TTTA-AAGGAAAATAGT-GGAAA
*** * * **
3862594 -AAACCCTTTCTTGCAAAACCAAAA-CTTCAGTAT
126 GAAAAGATTTCTTGCAAAA-CAAAATCATGAAAAT
* * * * * * **
3862627 GATGAATCCTAATGAGAA-GACTATGTTTATAG-TGCCTAATCTTGAAAAGAATGCGGACTAGTA
1 CATGTATCCTAATGA-AAGGAATATGTTTATGGCTTCCCAATCTTGAAAAGAATGAAGACTAGTA
* * * * ** * * *
3862690 TGAGTATTC-ATGGTTGTCTTATTTAA-GAAATAACCTTTGATTCT-ATGAAAAACAGTGGAAAG
65 CGAG-AATCGATGCTTGTCTTATTTAAGGGACGAA-CTTTGATT-TAAAGGAAAATAGTGGAAAG
* * * * * **
3862752 AAAAGCTTTTCTTGCGACACCAAAGCATGAATGT
127 AAAAG-ATTTCTTGCAAAACAAAATCATGAAAAT
*
3862786 CATGTATCCTATTGAAAGGAATATGTTT-TGGCTTCCCAATCTTGAAAAGAAT-AGAGACT-GTA
1 CATGTATCCTAATGAAAGGAATATGTTTATGGCTTCCCAATCTTGAAAAGAATGA-AGACTAGTA
* *
3862848 GCGAGAATCGATGCTTGTTTTATTTAAGGGACGAACTTTGATTTAAAGGAAAATAG-GGCGAAGA
65 -CGAGAATCGATGCTTGTCTTATTTAAGGGACGAACTTTGATTTAAAGGAAAATAGTGG-AAAGA
*
3862912 AAAGATTTCTATGCAAAAGAAAATCATGAAAAT
128 AAAGATTTCT-TGCAAAACAAAATCATGAAAAT
*
3862945 CATTTATCCTAATGA
1 CATGTATCCTAATGA
3862960 GTTGAATGTG
Statistics
Matches: 362, Mismatches: 100, Indels: 58
0.70 0.19 0.11
Matches are distributed among these distances:
156 1 0.00
157 11 0.03
158 110 0.30
159 224 0.62
160 12 0.03
161 4 0.01
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.30
Consensus pattern (159 bp):
CATGTATCCTAATGAAAGGAATATGTTTATGGCTTCCCAATCTTGAAAAGAATGAAGACTAGTAC
GAGAATCGATGCTTGTCTTATTTAAGGGACGAACTTTGATTTAAAGGAAAATAGTGGAAAGAAAA
GATTTCTTGCAAAACAAAATCATGAAAAT
Found at i:3862964 original size:476 final size:475
Alignment explanation
Indices: 3861909--3863731 Score: 2458
Period size: 476 Copynumber: 3.9 Consensus size: 475
3861899 GACTACTACA
* * * * *
3861909 AGAATTGATGCTTGACTTATTTAAGGGTTGAACTTTCATTTAAAGGATAATAGGGCAAAGAAAAG
1 AGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAG
* * * * *
3861974 ATTTCTACGCAAAAAAAAATCATCAATATCATTTATCATATTGAGGTGAATGTGTTTATA--ACG
66 ATTTCTATGCAAAAGAAAATCATCAAAATCATTTATCCTAATGAGGTGAATGTGTTTATAGTAC-
* *
3862037 TCTAATCACACAATGAATGAAGATCATTACTAGAATCCATGTTTGACTCATTTGAGGCACGAACT
130 -CTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACT
* ** * *
3862102 TAGACATTACAAAAATTAGTGGG-AAAAACCCTTTCTTGTGAAACTAAAACTTCAATATGATGAA
194 TAGACTTTACAAAAATTAGTGGGAAAAAACCCTTTCTTGCAAAACCAAAACTTCAATATGATAAA
* *
3862166 TCCTAATGAGAAGACTACGTTTATGGTGCCTAATCTTGAAAAAAATAGGGATTAGTATGAGTATT
259 TCCTAATGAGAAGACTACGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGAGTATT
* * * *
3862231 CATATTTATCTTATTTAAGAAACAACCTTTGAATCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
324 CATGTTTGTCTTATTTAAGAAACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
* *
3862296 TTGCGACA-C----CA--AA-G-CATGTATCCTACTGAAGGGAATATGTTTTGGCTTCCCAATCT
389 TTGCGACACCAAAGCATGAATGTCATGTATCCTAATGAAAGGAATATGTTTTGGCTTCCCAATCT
* *
3862352 TGAAAAGAATAAAGACTATTACG
454 TGAAAAGAATAGAGACT-GTACG
* *
3862375 AGAATCGATACTTGTCGTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAG
1 AGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAG
* * *
3862440 ATTTTTATGCAAAAGAAAATCATCAAAATCATTTATCCTAATGAGTTGAATGTGTTTATACTACC
66 ATTTCTATGCAAAAGAAAATCATCAAAATCATTTATCCTAATGAGGTGAATGTGTTTATAGTACC
*
3862505 TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACGTA
131 TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTA
* *
3862570 GACTTTACAAAAATTAGTGGGAAAAAACCCTTTCTTGCAAAACCAAAACTTCAGTATGATGAATC
196 GACTTTACAAAAATTAGTGGGAAAAAACCCTTTCTTGCAAAACCAAAACTTCAATATGATAAATC
* * * *
3862635 CTAATGAGAAGACTATGTTTATAGTGCCTAATCTTGAAAAGAAT-GCGGACTAGTATGAGTATTC
261 CTAATGAGAAGACTACGTTTATGGTGCCTAATCCTGAAAAGAATAG-GGATTAGTATGAGTATTC
* * * * *
3862699 ATGGTTGTCTTATTTAAGAAATAACCTTTGATTCTATGAAAAACAGTGGAAAGAAAAGCTTTTCT
325 ATGTTTGTCTTATTTAAGAAACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCT
*
3862764 TGCGACACCAAAGCATGAATGTCATGTATCCTATTGAAAGGAATATGTTTTGGCTTCCCAATCTT
390 TGCGACACCAAAGCATGAATGTCATGTATCCTAATGAAAGGAATATGTTTTGGCTTCCCAATCTT
3862829 GAAAAGAATAGAGACTGTAGCG
455 GAAAAGAATAGAGACTGTA-CG
* * *
3862851 AGAATCGATGCTTGTTTTATTTAAGGGACGAACTTTGATTTAAAGGAAAATAGGGCGAAGAAAAG
1 AGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAG
* * *
3862916 ATTTCTATGCAAAAGAAAATCATGAAAATCATTTATCCTAATGAGTTGAATGTGTTTATAGTGCC
66 ATTTCTATGCAAAAGAAAATCATCAAAATCATTTATCCTAATGAGGTGAATGTGTTTATAGTACC
*** * * * *
3862981 TAATCACAAAAACTATGAAGATCATTACTAG-TTCCATGTTTGTCTCATTTGAGGTACAAATTTA
131 TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTA
* * * * *
3863045 GACTTTACAAAAATTGGTGGGAAAAAAACCTTTCTTGCGAAACCAAAGCATCAATATGATAAATC
196 GACTTTACAAAAATTAGTGGGAAAAAACCCTTTCTTGCAAAACCAAAACTTCAATATGATAAATC
* *
3863110 CTAATGGGAAAACTACGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATT-GTTATGAGTATTC
261 CTAATGAGAAGACTACGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAG-TATGAGTATTC
* * * *
3863174 ATGCTTGTCTTATTTAAAAAAACAAACTTTGATTCTGTCAAAAATGGTGGAAAGAAAAGCTTTTC
325 ATGTTTGTCTTATTT-AAGAAACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
** * * *
3863239 TTATGACACCAAAGCTTGAATGTCATGTATCCTAATGAAAGGAGTGTGTTTTGGCTTCCCAATCT
389 TTGCGACACCAAAGCATGAATGTCATGTATCCTAATGAAAGGAATATGTTTTGGCTTCCCAATCT
* *
3863304 TGAAAGGAATGGAGACTGCTACG
454 TGAAAAGAATAGAGACTG-TACG
* * * * *
3863327 AGAATTGATGCTTGTCTTATTTATGGTATGAACTTT-ATTTTTAAGGAAAATAAGGCAAAGAAAA
1 AGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGA-TTTAAAGGAAAATAGGGCAAAGAAAA
* * * * * *
3863391 GATTT-TCATGCAATAGAAAATCATCAATATCTTTTATCCTAATAAGGTGAATGCGTTTATAGTG
65 GATTTCT-ATGCAAAAGAAAATCATCAAAATCATTTATCCTAATGAGGTGAATGTGTTTATAGTA
* *
3863455 CGTAATCACTAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACT
129 CCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACT
* * * * * *
3863520 TAGACGTTGCAAAAATTTGTGGGAAAAAAGCCTCTCTTGCAAAACC-AAACTTTCAATATGAAAA
194 TAGACTTTACAAAAATTAGTGGGAAAAAACCCTTTCTTGCAAAACCAAAAC-TTCAATATGATAA
* * * * * *
3863584 ATCCTAATGAGAAGATTATGTTTATGGTGCCTAATCCTCAAAAGAATGGGGATTAGTCTGAGTTT
258 ATCCTAATGAGAAGACTACGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGAGTAT
** * * *
3863649 TTTTGTTTGCCTTATTTAAGAAACAAACATTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTT
323 TCATGTTTGTCTTATTTAAGAAACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTT
*
3863714 CTTGCAACACCAAAGCAT
388 CTTGCGACACCAAAGCAT
3863732 CTGTAAGTTC
Statistics
Matches: 1199, Mismatches: 135, Indels: 36
0.88 0.10 0.03
Matches are distributed among these distances:
466 195 0.16
467 162 0.14
468 3 0.00
472 2 0.00
474 3 0.00
475 159 0.13
476 526 0.44
477 148 0.12
478 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (475 bp):
AGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAG
ATTTCTATGCAAAAGAAAATCATCAAAATCATTTATCCTAATGAGGTGAATGTGTTTATAGTACC
TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTA
GACTTTACAAAAATTAGTGGGAAAAAACCCTTTCTTGCAAAACCAAAACTTCAATATGATAAATC
CTAATGAGAAGACTACGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGAGTATTCA
TGTTTGTCTTATTTAAGAAACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTT
GCGACACCAAAGCATGAATGTCATGTATCCTAATGAAAGGAATATGTTTTGGCTTCCCAATCTTG
AAAAGAATAGAGACTGTACG
Found at i:3871993 original size:20 final size:20
Alignment explanation
Indices: 3871967--3872022 Score: 71
Period size: 19 Copynumber: 2.9 Consensus size: 20
3871957 ATTACAAGTT
*
3871967 TCATGTATCGATGCAATTG-
1 TCATGTATCGATACAATTGA
*
3871986 TGCATGTATCAATACAA-TGA
1 T-CATGTATCGATACAATTGA
3872006 TCATGTATCGATACAAT
1 TCATGTATCGATACAAT
3872023 GTATCGATGC
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
19 17 0.55
20 14 0.45
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (20 bp):
TCATGTATCGATACAATTGA
Found at i:3873657 original size:474 final size:475
Alignment explanation
Indices: 3872345--3876390 Score: 4601
Period size: 475 Copynumber: 8.5 Consensus size: 475
3872335 TGTATCTTCT
* * * * * * *
3872345 TGAAGGGAATATGTTTTGGTTTCCAAAGCATGAAAAGAATGGAGACTGTTAC-AGGAACCGATAC
1 TGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGA-GAATCGATGC
* * * ** * * *
3872409 TTGTCTTATCTAAGGGATGAA-TATTGATTTTATTGAAAATAAGGCAAAGAAAAGATTTTCGTGC
65 TTGTCTTATTTAAGGAATGAACT-TTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGC
* * * * *
3872473 AAAAAAAAATCATCAATATCATTTATCCTACA-GAAGAGAAAGTGTTTATTGTACCTAATCACAA
129 -AAAAAAAATCATCAATATCATTTATCCTA-ATGAGGTGAATGTGTTTATAGTGCCTAATCACAA
** * * ** * * * *
3872537 AATGAGGGAAGATCATTAGTGGAATCTTTGTTCGTCTCATTTGACGCACGAACATAGACGTTACA
192 AATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA
* * * * * * * *
3872602 AAAATTAGTGGGAAAAATGCTTTTCTTGCGAGACCAAAACATCAATATCG-TGTATCCCAATGAG
257 AAAATTAGTGAGAAAAAAGCCTTTCTTGCGAAACCAAAGCTTCAATAT-GATGAATCCTAATGAG
* * * ** * **
3872666 AAGACAATATTTATGGTGCCTAA-CCTTGAAAA-AATGGAGATTAGTACAAGTATTCTTGTTCAT
321 AAGACTATGTTTATGGTGCCTAATCC-TGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGT
* * ** * *
3872729 CTAATTTAAGAGACAAACTTCAATTCTATCAAAAACGGT-AAAAGGAAAAGCTTTTCTTGCGACA
385 CTTATTTAAGAAACAAACTTTGATTCTATCAAAAACAGTGGAAA-GAAAAGCTTTTCTTGCGACA
* * *
3872793 CCAAACCGTCAATGTCATGTATCCTAA
449 CCAAAGCATGAATGTCATGTATCCTAA
* ** * * ** * *
3872820 AGAAGAAAATGTATTTTGGCTTCCTAATCTTGAAAAGAATGGAGACTGCAACAAGAATCAATGCT
1 TGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCT
* * ** *
3872885 TGTCTTATCTAACGAATGAACTTTGATTTAAAGGAAAATAGGGCAAA-AAAAGATTTTTACGCAA
66 TGTCTTATTTAAGGAATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAA
3872949 AAGAAAATCATCAATATCATTTATCCT-AT----TGAATGTGTTTATAGTGCCTAATCACAAAAT
131 AA-AAAATCATCAATATCATTTATCCTAATGAGGTGAATGTGTTTATAGTGCCTAATCACAAAAT
* * * * * *
3873009 GGATGAGGATCATTGCTAGAATCCACGTTTGTCTCATTTGAGGCATGAACTTAGACTTTATAAAA
195 GAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAA
* *
3873074 ATTAGT-AGGAAAAAACCCTTTCTTGTGAAA-CAAAGCTTCAATATGATGAATCCTAATGAGAAG
260 ATTAGTGA-GAAAAAAGCCTTTCTTGCGAAACCAAAGCTTCAATATGATGAATCCTAATGAGAAG
*
3873137 ACTATGTTTATGGTGCCTAATTCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTA
324 ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTA
* * * * *
3873202 TTTAAGCAACAAACTTTGATTCTATCAAAAATAATGGAAAGAAAATCTTTTCTTGCAACACCAAA
389 TTTAAGAAACAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGACACCAAA
*
3873267 GCATGAATGTCATGTATCCTAT
454 GCATGAATGTCATGTATCCTAA
* * * * * * * * *
3873289 TGTAGGGAATATGTTTTGACTT-CTAATCTAGAAAAAAATAGAGACTGTTATGAGAATCGGTGCT
1 TGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCT
* * * *
3873353 TGTCATATTTAAGGAATGAACTTTAATTTAAAGGAAATTAGGGCAAATAAAAGATTTCCATGCAA
66 TGTCTTATTTAAGGAATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAA
* * ** *
3873418 AAGAAAATCATCAAAATCATTTATCCTGATGAATTGAATGTGTTAATAGTGCCTAATCACAAAA-
131 AA-AAAATCATCAATATCATTTATCCTAATGAGGTGAATGTGTTTATAGTGCCTAATCACAAAAT
* * * *
3873482 GAATTAAGATCATTACTAGAATCCACGTTCGTCTCATTTGAGGTACGAACTTAGACTTTACAAAA
195 GAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAA
* * *
3873547 ATTAGTGAGAAAAAAGCCTTCCTTGCAAAACCAAAGCTTCAATATGATGAATCCTAATGACAAGA
260 ATTAGTGAGAAAAAAGCCTTTCTTGCGAAACCAAAGCTTCAATATGATGAATCCTAATGAGAAGA
* *
3873612 CTATGTTTATGGTGCCTAATCCTGAAAAGATTGGGGATTAGTATGAGTATTCATGTTTATCTTAT
325 CTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTAT
** * *
3873677 TTAAGAAACAAACTTTGATTCTATCAAAAGTAGTGGGAAGAAAAGCTTTTCTTGCTACACCAAAG
390 TTAAGAAACAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAG
*
3873742 TATGAATGTCATGTATCCTAA
455 CATGAATGTCATGTATCCTAA
* * * *
3873763 TGAAGGGAGTGTGTTTTGGCTTCCTAATCTTGAAAAGAGTGGAGACTGTTA-TAGGAATCGATGC
1 TGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGA-GAATCGATGC
* * **
3873827 TTGCCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTATATGCA
65 TTGTCTTATTTAAGGAATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCA
* * * * * * * **
3873892 AAAGAAAATCATTAATATCATTTACCCTATTGAAGTGAATGTGTTTGTTGTGCCGAATCATGAAA
130 AAA-AAAATCATCAATATCATTTATCCTAATGAGGTGAATGTGTTTATAGTGCCTAATCACAAAA
* * * *
3873957 TGAACGAAGAACATTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTAGAATTTACAAA
194 TGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAA
* * * * * * * *
3874022 AATTTGTGGGAAAAATGCCTTTCTTGCGAGACCAAAACATT-AATATCATGCATCGTAATGAGAA
259 AATTAGTGAGAAAAAAGCCTTTCTTGCGAAACCAAAGC-TTCAATATGATGAATCCTAATGAGAA
* * * * * *
3874086 -AATAATGTTTATGGTGCCTAA-CCTTGAAAAAAATAGGAATTAGTATGAGTATTCTTGTTTCTC
323 GACT-ATGTTTATGGTGCCTAATCC-TGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTC
* * ** * * *
3874149 TTATTTAAGAGATAAACTTCAATTCTATTAAAAGCAGTGGAAAGAAAAGCTTTTCTTGCGACATC
386 TTATTTAAGAAACAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGACACC
**
3874214 AAAGCATGAATGTCATGTATCCTTT
451 AAAGCATGAATGTCATGTATCCTAA
* * *
3874239 TGAA-GGAATATGTTTTGGCTTCCCAATCTTGAAAAAAAATAGAGACTGTTACGAGAATCGATGC
1 TGAAGGGAATGTGTTTTGGCTTCCCAATCTTG-AAAAGAATGGAGACTGTTACGAGAATCGATGC
* * *
3874303 TTGTCGTATTTAAGGGATGAATTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCA
65 TTGTCTTATTTAAGGAATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCA
* * * * * *
3874368 AAAAAAATCCTGAAAATCATTTATCCAAATGAGTTGAATGTGTTTATAGTGCCTAATCATAGAAA
130 AAAAAAATCATCAATATCATTTATCCTAATGAGGTGAATGTGTTTATAGTGCCTAATCACA-AAA
* * * ** *
3874433 -AAATGAAGATAATTACTAG-TTCCACATTTGTCTCATTTGAGGCACAAACTT-GAACTTTACAA
194 TGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAG-ACTTTACAA
* * * *
3874495 AAATTGGT-AGGAAAAAAGCCTTTCTTGCGAAGCCAAGGCATT-AATGTGATGAATCCTAATGAG
258 AAATTAGTGA-GAAAAAAGCCTTTCTTGCGAAACCAAAGC-TTCAATATGATGAATCCTAATGAG
* * *
3874558 AAGACTATGTTTATGGTGCCTAATCTTGAAAAGATTGGGGATTAGTATGAGTATTCACGTTTGTC
321 AAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTC
* * ** *
3874623 TTATTTATGAAACAAACTTTGATTCTATCAATAAC-GAAAGAAAGAAAAGCTTTTCTTGTGACAC
386 TTATTTAAGAAACAAACTTTGATTCTATCAAAAACAG-TGGAAAGAAAAGCTTTTCTTGCGACAC
* *
3874687 CAAAGCATCAATGTCATGTAACCTAA
450 CAAAGCATGAATGTCATGTATCCTAA
* * ** *
3874713 TGAAGGGAATGTGTTTTGGCTTCCAAATCTTGAAAAGAATGGAGACTGCTACTTGAATTGATGCT
1 TGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCT
* * * * ** *
3874778 CGCCTTATTTAA-GATATGAA-TTTCAATTTTAAGGAAAATAGGAAAAAGAAAACATTTCCATGC
66 TGTCTTATTTAAGGA-ATGAACTTT-GATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGC
* * * * *
3874841 AATAGAAAATCATCAAGATCA-TTATTCTAATGAGGAGAATGTGTTTATAGTGCCTAATAACAAA
129 AA-AAAAAATCATCAATATCATTTATCCTAATGAGGTGAATGTGTTTATAGTGCCTAATCACAAA
* * **
3874905 ATGAATGAAGATC-TTACAAGAATCCATGTTTATCTCATTCAAGGCACGAACTTAGACTTTACAA
193 ATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAA
* * * * * *
3874969 AAAATGGTGGGAAAAAAGCCTTTCTTACGAAACCAAAG-TATCAATATGATGTATCCTAATAAGA
258 AAATTAGTGAGAAAAAAGCCTTTCTTGCGAAACCAAAGCT-TCAATATGATGAATCCTAATGAGA
* * * * *
3875033 AGACTATGTTTATGGAGCCTAATCCTCAAAGGAATAGGGATTAGTATGAGTATTCATGTTTGCCT
322 AGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCT
* * * *
3875098 TTTTTAAGAAACAAACTTTGATTCTAT-AAAAAAACGATGGAAAGAAATGCTTTTCTTGTGACAC
387 TATTTAAGAAACAAACTTTGATTCTATCAAAAACA-G-TGGAAAGAAAAGCTTTTCTTGCGACAC
* * *
3875162 CAAAGCTTTAATGTCATGTATCCTAT
450 CAAAGCATGAATGTCATGTATCCTAA
* * *
3875188 TGAAGGGAATATGTTTTGGCTTCCCAATCTTGAAAAGAATAGAGATTGTTACGAGAATCGATGCT
1 TGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCT
* *
3875253 TGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATACAA
66 TGTCTTATTTAAGGAATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAA
* * *
3875318 AAAAAATCATCAAAATCATTTATCCTAATGAGTTGAATGTGTTTAT-GATGCCTAATCACAAAAA
131 AAAAAATCATCAATATCATTTATCCTAATGAGGTGAATGTGTTTATAG-TGCCTAATCACAAAAT
* * * * *
3875382 GAATGAAGAACATTACTA-ATTCCATGTTTGTCTTATTTGTA-GCACAAACTTAGTCTTTACAAA
195 GAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG-AGGCACGAACTTAGACTTTACAAA
* * *
3875445 AATTAGTGAGAAAAAAGCCTTTCTTGTGAAGCCAAAG-TATCAATATGATGAATCCAAATGAGAA
259 AATTAGTGAGAAAAAAGCCTTTCTTGCGAAACCAAAGCT-TCAATATGATGAATCCTAATGAGAA
* * * * * *
3875509 AACTAT-TTTAAAGGTGCGTAATCCTGAAAAAAATGGGCATTAGTATGAGTATTC-TGGTTTATC
323 GACTATGTTT-ATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCAT-GTTTGTC
* * ** * *
3875572 TTATTTAAGAAAAAAACTTTGACTT-TATCAAATATGGTGGAAAGAAAAGCTTTTCATGTGACAC
386 TTATTTAAGAAACAAACTTTGA-TTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGACAC
3875636 CAAAGCATGAATG---T-TATCCTAA
450 CAAAGCATGAATGTCATGTATCCTAA
* * **
3875658 TGAAGGGAGTGTGTTTTGGCTTCCCAATCTTGAAAGGAATGGAGACTACTACGAGAATCGATGCT
1 TGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCT
* * * * *
3875723 TGTCTTATTTAAAGG-ATGAACTTTAAATTAAAGGAAAATAGGTCAAAGAAAAGATTTCTACGCA
66 TGTCTTATTT-AAGGAATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCA
** * *
3875787 AAAAAAATCATCAATATTGTTTATCCTAATGAGGTGAAAGTGTTTATAGTGCCCAATCACAAAAT
130 AAAAAAATCATCAATATCATTTATCCTAATGAGGTGAATGTGTTTATAGTGCCTAATCACAAAAT
*
3875852 GAATGAAGATCATTACTAGAATCCATGTTTCTCTCATTTGAGGCACGAACTTAGACTTTACAAAA
195 GAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAA
* * * *
3875917 ATTAGTGAGAAAAAAACCTTTCTTACAAAACCAAAGCTTCAATATGATGTATCCTAATGAGAAGA
260 ATTAGTGAGAAAAAAGCCTTTCTTGCGAAACCAAAGCTTCAATATGATGAATCCTAATGAGAAGA
* ** * *
3875982 CTATATTTATGGTGCCTAATCCT-AAAAGGAATATGGATTAGTTTGAGTATTCATGTTTGCCTTA
325 CTATGTTTATGGTGCCTAATCCTGAAAA-GAATGGGGATTAGTATGAGTATTCATGTTTGTCTTA
* * *
3876046 TTTAAGAAACAAACTTTGATTCTATCAAAAACGGTAGAAAGAAATGCTTTTCTTGCGACACCAAA
389 TTTAAGAAACAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGACACCAAA
* * * *
3876111 ACATCAATGTCTTGTATCCTAT
454 GCATGAATGTCATGTATCCTAA
* * * * *
3876133 TGAAGGGAATGCGTTTTGGCTTCCAAATCTTGAAAAGAATGGAAACT-TCTACGGGAATTGAT-C
1 TGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGT-TACGAGAATCGATGC
* * * * * * ** *
3876196 TTTGTCTTATTTAAAGG-ATGAACATTGATTTTATGGAAAATAAGGCGAAGAAACGATTTTTATA
65 -TTGTCTTATTT-AAGGAATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATG
* * * * *
3876260 CAAAAAAAATCATCAATATCATTTATCCCAAAGAGGTGAATGGGTTTATTGTACCTAATCACAAA
128 CAAAAAAAATCATCAATATCATTTATCCTAATGAGGTGAATGTGTTTATAGTGCCTAATCACAAA
* * *
3876325 ATGAAGGAAGATCATTAGTAGAATCCATGTTTGTCTCATCTGAGGCACGAACTTAGACTTTACAA
193 ATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAA
3876390 A
258 A
3876391 CATTGTGTTA
Statistics
Matches: 3025, Mismatches: 478, Indels: 136
0.83 0.13 0.04
Matches are distributed among these distances:
467 1 0.00
468 126 0.04
469 252 0.08
470 203 0.07
471 206 0.07
472 7 0.00
473 105 0.03
474 818 0.27
475 956 0.32
476 348 0.12
477 3 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (475 bp):
TGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCT
TGTCTTATTTAAGGAATGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAA
AAAAAATCATCAATATCATTTATCCTAATGAGGTGAATGTGTTTATAGTGCCTAATCACAAAATG
AATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAA
TTAGTGAGAAAAAAGCCTTTCTTGCGAAACCAAAGCTTCAATATGATGAATCCTAATGAGAAGAC
TATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATT
TAAGAAACAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC
ATGAATGTCATGTATCCTAA
Found at i:3876710 original size:20 final size:20
Alignment explanation
Indices: 3876687--3876759 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
3876677 ACAATTCAAA
3876687 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
3876707 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
3876728 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
3876748 GTATCGATACAT
1 GTATCGATACAT
3876760 AAAAAAGATG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:3876731 original size:21 final size:21
Alignment explanation
Indices: 3876705--3876780 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
3876695 ACATGTTGCA
3876705 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
3876726 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
*
3876746 ATGTATCGATACATAAAAAAG
1 ATGTATCGATACATGAAAAAG
3876767 ATGTATCGATACAT
1 ATGTATCGATACAT
3876781 TTCTTGGCAG
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.29
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:3876738 original size:41 final size:41
Alignment explanation
Indices: 3876687--3876780 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
3876677 ACAATTCAAA
*
3876687 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
3876728 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
3876769 GTATCGATACAT
1 GTATCGATACAT
3876781 TTCTTGGCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.30
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:3876837 original size:13 final size:13
Alignment explanation
Indices: 3876819--3876844 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3876809 TACAGCAAGT
3876819 ATGTATCGATACA
1 ATGTATCGATACA
3876832 ATGTATCGATACA
1 ATGTATCGATACA
3876845 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3876927 original size:20 final size:20
Alignment explanation
Indices: 3876899--3876936 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
3876889 CTATATTTTC
3876899 AAATATGTATCGATACATCA
1 AAATATGTATCGATACATCA
*
3876919 AAATTTGTATCGATACAT
1 AAATATGTATCGATACAT
3876937 TTACACGGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.42, C:0.13, G:0.11, T:0.34
Consensus pattern (20 bp):
AAATATGTATCGATACATCA
Found at i:3880926 original size:15 final size:15
Alignment explanation
Indices: 3880906--3880936 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
3880896 TAAAAATGTC
*
3880906 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
3880921 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
3880936 C
1 C
3880937 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:3883029 original size:20 final size:21
Alignment explanation
Indices: 3882950--3883028 Score: 72
Period size: 20 Copynumber: 3.7 Consensus size: 21
3882940 AATGTCCAAA
*
3882950 ATGTATCGATACATGTTTT-T
1 ATGTATCGATACATCTTTTCT
* *
3882970 GTGTATCGATACATCTGGAAATTCT
1 ATGTATCGATACATCT----TTTCT
3882995 ATGTATCGATACAT-TTTTCT
1 ATGTATCGATACATCTTTTCT
*
3883015 TTGTATCGATACAT
1 ATGTATCGATACAT
3883029 TGTATCGATA
Statistics
Matches: 48, Mismatches: 6, Indels: 10
0.75 0.09 0.16
Matches are distributed among these distances:
20 31 0.65
24 3 0.06
25 14 0.29
ACGTcount: A:0.27, C:0.14, G:0.15, T:0.44
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTCT
Found at i:3883033 original size:13 final size:13
Alignment explanation
Indices: 3883015--3883053 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
3883005 ACATTTTTCT
3883015 TTGTATCGATACA
1 TTGTATCGATACA
3883028 TTGTATCGATACA
1 TTGTATCGATACA
*
3883041 CTGTATCGATACA
1 TTGTATCGATACA
3883054 GGGTGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:3885506 original size:20 final size:20
Alignment explanation
Indices: 3885483--3885555 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
3885473 ACAATTCAAA
3885483 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
3885503 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
3885524 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
3885544 GTATCGATACAT
1 GTATCGATACAT
3885556 AAAAAAGATG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:3885527 original size:21 final size:21
Alignment explanation
Indices: 3885501--3885576 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
3885491 ACATGTTGCA
3885501 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
3885522 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
*
3885542 ATGTATCGATACATAAAAAAG
1 ATGTATCGATACATGAAAAAG
3885563 ATGTATCGATACAT
1 ATGTATCGATACAT
3885577 TTCTTGGCAG
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.29
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:3885534 original size:41 final size:41
Alignment explanation
Indices: 3885483--3885576 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
3885473 ACAATTCAAA
*
3885483 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
3885524 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
3885565 GTATCGATACAT
1 GTATCGATACAT
3885577 TTCTTGGCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.30
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:3885633 original size:13 final size:13
Alignment explanation
Indices: 3885615--3885640 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3885605 TACAGCAAGT
3885615 ATGTATCGATACA
1 ATGTATCGATACA
3885628 ATGTATCGATACA
1 ATGTATCGATACA
3885641 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3885723 original size:20 final size:20
Alignment explanation
Indices: 3885695--3885732 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
3885685 CTATATTTTC
3885695 AAATATGTATCGATACATCA
1 AAATATGTATCGATACATCA
*
3885715 AAATTTGTATCGATACAT
1 AAATATGTATCGATACAT
3885733 TTACACGGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.42, C:0.13, G:0.11, T:0.34
Consensus pattern (20 bp):
AAATATGTATCGATACATCA
Found at i:3888485 original size:476 final size:476
Alignment explanation
Indices: 3886389--3893497 Score: 8126
Period size: 476 Copynumber: 15.0 Consensus size: 476
3886379 AAGCTTTCAC
* * *
3886389 ATTGGTTGGGAAAAATGCCTTTCTTGC-AAGACCAAAACATCAATATCG-TGTATCCTAATGAGA
1 ATTGG-TGGGAAAAAAGCCTTTCTTGCGAA-ACCAAAGCATCAATAT-GATGAATCCTAATGAGA
* * * * * * * *
3886452 AGACAATGTTTAGGGTGCTTAACCTTGAAAAAAATAGAGATTAGTATGAGTATTCTTCTTTGTCT
63 AGACTATGTTTATGGTGCCTAATCTTGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCT
* ** ** * **** *
3886517 AATTTAAGGGACAAACTTCAATTTTATCAAAAACGACAAAAAGAAAAGCTTTTCTTGAGACACCA
128 TATTTAAGAAACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCA
* * * * **
3886582 AAGCATCAATGTCATGTATCCTGTTGAGGGGAATATGTTTTGGCTTCCCAATCTTGAAAAGAACG
193 AAGCATCAATGTCACGTATCCTATTGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATA
** * * * * *
3886647 GAGACTATTACGAGAATCGATGCTGGTCTCATTTAAGGGGTGAGCTTTGATTTAAAGGAAAACAG
258 GAGACTGCTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAG
* * * * *
3886712 GGTAAAGAAAAGATTTCCATGCAAAAAAAAAATCATCAAAATCATTTATCCTAATGAGTTGAATG
323 GGCAAAGAAAAGATTTCTATGC-AAAAGAAAATCATCAATATCATTTATCCTAATGAGGTGAATG
* * * * *
3886777 TGTTTGTTATGCCTAATCACAAAAAGAATGAAGAACATTACTA-ATTCCATGTTTGTCTTATTTG
387 TGTTTATAATGCCTAATCACAAAATGAATGAAGATCATTACTAGATTCCATGTTTGTCTCATTTG
** * *
3886841 TA-GCATAAACTTAGTCTTTACAAAT
452 -AGGCACGAACTTAGACTTTACAAAA
3886866 ATTGGTGGGAAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGAATCCTAATGAGAAG
1 ATTGGTGGG-AAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGAATCCTAATGAGAAG
* * *
3886931 ACTATGTTTATGCTGCCTAATCTTGAAAAGAATAGGAATTAGTATGAGTATTCATGTTTGCCTTA
65 ACTATGTTTATGGTGCCTAATCTTGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTA
* * * *
3886996 TTTAAGAAACAAACTTTGATTCTATAAAAAACGATGGAAAGGAAACCTTTTCTTGCGACACCAAA
130 TTTAAGAAACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAA
* * * * *
3887061 GCGTCAATGTCACGTATCCTAATGAAGGGAGTGTGTTTTGGCATCCCAATCTTGAAAGGAATAGA
195 GCATCAATGTCACGTATCCTATTGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATAGA
* *
3887126 CACTGCTACGAGAATCGATGCTTGTCTTATTTAAGGGGTGAACTTTGATTTAAAGGAAAATAGGG
260 GACTGCTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGG
* * * * * *
3887191 CAAAGAAAAGATTTCTACGCAAAAGAAAATGATCTATATTATTTATCCTAACGAGGTGAATGCGT
325 CAAAGAAAAGATTTCTATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGTGAATGTGT
* * * * *
3887256 TTATCATGCCTAATCACAAAATGAATAAAGATCATTGCTAGAGTCCATGTTTTTCTCATTTGAGG
390 TTATAATGCCTAATCACAAAATGAATGAAGATCATTACTAGATTCCATGTTTGTCTCATTTGAGG
* * *
3887321 CACGGACATAGATTTTACAAAA
455 CACGAACTTAGACTTTACAAAA
* * * * * * *
3887343 ATTAGTGAGAAAAAA-CCTTTATTGCGAAACAAAAGCTTTAATAAGATGAATCCTAATGAGAAGA
1 ATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGAATCCTAATGAGAAGA
* * *
3887407 CTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTACTG-GTATTCATGTTTGGCTTA
66 CTATGTTTATGGTGCCTAATCTTGAAAAGAATAGGGATTAGTA-TGAGTATTCATGTTTGTCTTA
* * * **
3887471 TTTAAGAAATAAACTTTGATTCTATCAAAAACGGTGGAAAGAAACGCTTTTCTTACGGGACCAAA
130 TTTAAGAAACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAA
* * * * * * * *
3887536 GTATGAATGTCAAGTATCTTATTGAAGGGAATATGTTTTGGCTTCCCCATCATGAAAAGAATAGT
195 GCATCAATGTCACGTATCCTATTGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATAGA
** * * * ** *
3887601 GACTATTATGAGAATTGATGCTTGTCTTATTTTAGGGATGAACTTTGATTTATGGGAAAATAAGG
260 GACTGCTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGG
* * * * * *
3887666 CAAAGAAAAGATTTCCATGCAAAATAAAATCATCAAAATCAATTATCCTAATCG-GTTGAAAGTG
325 CAAAGAAAAGATTTCTATGCAAAAGAAAATCATCAATATCATTTATCCTAAT-GAGGTGAATGTG
*
3887730 TTTATAATGCCTAATCACAAAAAGAATGAAGATCATTACTAG-TTCCATGTTTGTCTCATTTGAG
389 TTTATAATGCCTAATCACAAAATGAATGAAGATCATTACTAGATTCCATGTTTGTCTCATTTGAG
* *
3887794 GCACAAACTTACACTTTACAAAA
454 GCACGAACTTAGACTTTACAAAA
* *
3887817 AATGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGAATCCTAATGAGAAGA
1 ATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGAATCCTAATGAGAAGA
* *
3887882 C--TGTTTATGCTGCCTAATCTTGAAAAGAAT-GGGAATTAGTATGAGTATTCATGTTTGCCTTA
66 CTATGTTTATGGTGCCTAATCTTGAAAAGAATAGGG-ATTAGTATGAGTATTCATGTTTGTCTTA
* * *
3887944 TTTAAGAAACAAACTTTGATTCTATCAAAAATGAG-GGAAAGGAAAGCTTTTCTTGTGACACCAA
130 TTTAAGAAACAAACTTTGATTCTATCAAAAACG-GTGGAAAGAAAAGCTTTTCTTGCGACACCAA
* * * * * * * *
3888008 AGCGTCAATGTCACATATCCTAATAAAGAGATTGTGTTTTGGCTTCCTAATCTTGAAAGGAATAG
194 AGCATCAATGTCACGTATCCTATTGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATAG
* * *
3888073 ACACTGCTACGAGAATCGATGCTTGTCGTATTTAAGGGGTGAACTTTGATTTAAAGGAAAATAGG
259 AGACTGCTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGG
* * * * * *
3888138 GCAAAGAAAAGATTTCTACGCAAAAGAAAATGATCTATATTATTTATCCTAACGAGGTGAATGCG
324 GCAAAGAAAAGATTTCTATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGTGAATGTG
** * * * *
3888203 TTTATCGTGCCTAATCACAAAATGAATAAAGATCATTGCTAGAGTCCATGTTTTTCTCATTTGAG
389 TTTATAATGCCTAATCACAAAATGAATGAAGATCATTACTAGATTCCATGTTTGTCTCATTTGAG
* *
3888268 GCACGAACATAGATTTTACAAAA
454 GCACGAACTTAGACTTTACAAAA
* * * * * * *
3888291 ATTAGTGAGAAAAAACCCTTTCTTGCGAAACAAAAGCTTTAATATGATGAATCCTAATGAGAAAA
1 ATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGAATCCTAATGAGAAGA
* *
3888356 CTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATTG-GTATTCATGTTTGGCTTA
66 CTATGTTTATGGTGCCTAATCTTGAAAAGAATAGGGATTAGTA-TGAGTATTCATGTTTGTCTTA
** *
3888420 TTTAAGAAACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTATGAGACCAAA
130 TTTAAGAAACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAA
* * * *
3888485 GCATGAATGTCATGTATCCTATTGAAGGGAATATGTTTTGGCTTCCCAATCTTGAAAAGAATAGT
195 GCATCAATGTCACGTATCCTATTGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATAGA
** * * * * *
3888550 GACTATTGCTAGAATTGATGCTTGTCTTATTTTAGGGATGAACTTTGATTTATAGGAAAATAGGG
260 GACTGCTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGG
* * * * * * * *
3888615 CAAAAAAAAGATTCCCATGCAAAATAAAATCATCAAAATCAATTATCCTAATGAGTTGAAAGTGT
325 CAAAGAAAAGATTTCTATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGTGAATGTGT
*
3888680 TTATAATGCCTAATCACAAAAAGAATGAAGATCATTACTAG-TTCCATGTTTGTCTCATTTGAGG
390 TTATAATGCCTAATCACAAAATGAATGAAGATCATTACTAGATTCCATGTTTGTCTCATTTGAGG
* *
3888744 CACAAACTTAGAGTTTACAAAA
455 CACGAACTTAGACTTTACAAAA
* *
3888766 ATTGGTAGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGAATCCTAATGAGAAGA
1 ATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGAATCCTAATGAGAAGA
* * * *
3888831 CTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGAATTCATGTTTGGCTTTT
66 CTATGTTTATGGTGCCTAATCTTGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTAT
* * * *
3888896 TTAAGAAGCAAACTTTGATTCTATAAAAAACGATGGAAAGAAAAGCTTTTCTTACGACACCAAAG
131 TTAAGAAACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAG
* * *
3888961 CATCAATGTCACGTATCCTAGTGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAGGAATAGGG
196 CATCAATGTCACGTATCCTATTGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATAGAG
* * * * * *
3889026 ACTACCT-CGAGAATTGATGTTTGTCTTATTTAAGGGATGAACTTTGATTTAAAAG-AATTAGAG
261 ACT-GCTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGG
* * * *
3889089 CAAAGAAAAGATTT-TCATGCAAGATAAAATC-TACAAAATCATTTATCCTAATGAGTTGAATGT
325 CAAAGAAAAGATTTCT-ATGCAAAAGAAAATCAT-CAATATCATTTATCCTAATGAGGTGAATGT
*
3889152 GTTTATAATACCTAATCAACAAAA-GAATGAAGATCATTACTAG-TTCCATGTTTGTCTCATTTG
388 GTTTATAATGCCTAATC-ACAAAATGAATGAAGATCATTACTAGATTCCATGTTTGTCTCATTTG
* *
3889215 AGGCACAAACTTAGACTTCACAAAA
452 AGGCACGAACTTAGACTTTACAAAA
* * * * * *
3889240 ATTGGTTGGAAAAAAGCCATTCTTGCGAAGCTAAAGTATCAATATGATGAATTCTAATGAGAAGA
1 ATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGAATCCTAATGAGAAGA
* * *
3889305 CTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTGATGTTTGCCTTAT
66 CTATGTTTATGGTGCCTAATCTTGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTAT
* * * * * * * *
3889370 TTAAG-AACGAACTTTGATTCTATCATAAACGATGAAAAAAAAAGCCTTTCTTGCAACCCCAAAG
131 TTAAGAAACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAG
* * * * * * * *
3889434 CCTCAATGTGACATATCCTAATGAAGGGAGTGTGTTTTGGCTTCCCAAT-TTGGAAAGGATTGGA
196 CATCAATGTCACGTATCCTATTGAAGGGAATGTGTTTTGGCTTCCCAATCTT-GAAAAGAATAGA
* * * * *
3889498 GATTGCTTCAAGAATCGATGCTTGTCTTATTTAAAGGATGAACTTTGATTTAAAGGAAAAGAGGG
260 GACTGCTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGG
* * * *
3889563 CAAAGGAAAGATTTCTACAGAAAAAAAAAATCATCAATATCATTTATCCTAATGAGGTGAATGTG
325 CAAAGAAAAGATTTCTA-TGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGTGAATGTG
* * * * * *
3889628 TTTATAGTGACTAATCACAAAATGAATGAAGATTATTTCCAGAATCCATGTTTGTCTCATTTGAG
389 TTTATAATGCCTAATCACAAAATGAATGAAGATCATTACTAGATTCCATGTTTGTCTCATTTGAG
3889693 GCACGAACTTAGACTTTACAAAA
454 GCACGAACTTAGACTTTACAAAA
* * * * *
3889716 ATTAGTGAGG-AAAAAGCCTTTCTTGCAAAACCAAAGCTTCAATATGATGTATCCTAATAAGAAG
1 ATTGGTG-GGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGAATCCTAATGAGAAG
* * * * *
3889780 ACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTTGTTTGAATATTCTTGTTT-TCCTT
65 ACTATGTTTATGGTGCCTAATCTTGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGT-CTT
* * * * **
3889844 ATTAAAAAAACAAACTTTGATTCTATTAAAAACGATGGAAAGAAAAGCTTTTCTTATGACACCAA
129 ATTTAAGAAACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAA
* * * * * * *
3889909 AGCATCAATGTCATGTATCCTATTGAAGGGAATGTGATTTGCCTTTCAAATGTTGAAAAGAATGG
194 AGCATCAATGTCACGTATCCTATTGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATAG
* * * * * * * * * * *
3889974 AGATTGTTGCGGGAATAGACGCTTGCCTTATTTAAGGGATGAACTTTGATTTTATGAAAAATAAG
259 AGACTGCTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGG
* * * * * *
3890039 GCAAAGAAACGATTT-TCGTGGAAAAGAAAATCATCAATATCATTTATCTTAAAGAGGAGAATGT
324 GCAAAGAAAAGATTTCT-ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGTGAATGT
** * * * ** * * *
3890103 GTTTATTTTACCTTATCACAAAATTAGGGAAGATCATTAGTAAAATCCATGTTTGTCTCATTTGA
388 GTTTATAATGCCTAATCACAAAATGAATGAAGATCATTACTAGATTCCATGTTTGTCTCATTTGA
*
3890168 GGCATGAACTTAGACTTTACAAAA
453 GGCACGAACTTAGACTTTACAAAA
** * * * * *
3890192 ATAAGTGGGAAAAAGGCCTTTCTTGTGAGACCAAAACATCAATATCG-TGTATCCTAATGAGAAG
1 ATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATAT-GATGAATCCTAATGAGAAG
* * *
3890256 A-TAATGTTTATGGTGCCTAACCTTGAAAAAAAATAGGGATTAGTATGAGTATTCTTGTTTGTCT
65 ACT-ATGTTTATGGTGCCTAATCTTG-AAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCT
* * * * * *
3890320 AATTTAAGAGACAAA-TTTCAATTCTATCAAAAATGGCGAAAAGAAAAGCTTTTCTTGCGACACC
128 TATTTAAGAAACAAACTTT-GATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACC
* * *
3890384 AAAGCATCAATGTCATGTATCCTATTGAAGGGAATATGTTTTGGCTTTCCAATCTTGAAAAGAAT
192 AAAGCATCAATGTCACGTATCCTATTGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAAT
** * * *
3890449 AGAGACTATTACGAGAATCAATGCTTTTCTTATTTAAGGGATGAACTTTGATTTAAATGAAAATA
257 AGAGACTGCTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATA
* * * * * ** * *
3890514 GGGTAATGAAAAGATTTCCATGCAAAAGAAAATCATCAAAATCATTTATTCTAGCGAGTTGAATA
322 GGGCAAAGAAAAGATTTCTATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGTGAATG
* * * * *
3890579 TGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTATTAG-TTTCATGTTTGTCTTATTTG
387 TGTTTATAATGCCTAATCACAAAATGAATGAAGATCATTACTAGATTCCATGTTTGTCTCATTTG
3890643 AGGCAC-AAGCTTAGACTTTACAAAA
452 AGGCACGAA-CTTAGACTTTACAAAA
* * * ** ** *
3890668 ATTGGAGAGAAAAAAGCTTTTCTTGCGAAATGAAAGCATCAATATGATGAATCCTCCTAAGAAGA
1 ATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGAATCCTAATGAGAAGA
** *
3890733 CTATGTTTATGGCACCTAATCTTGGAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTAT
66 CTATGTTTATGGTGCCTAATCTTGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTAT
* * *
3890798 TTAAGAAACAAACTTTGATTATATCAAAAACGGTGGAAAGAAAAGCTGTTCTTGCAACACCAAAG
131 TTAAGAAACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAG
* ** * * * *
3890863 CATCAATGTCACGTATCCTAATGAAAAGAGTGTGTTTTGGCTTCCCAATCTTGAAAGGAATGGAT
196 CATCAATGTCACGTATCCTATTGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATAGAG
* ** * * * * ** * *
3890928 ACTACTACTTGAATTGATGCCTGTCTCATTCAAGATATGAACTTTAATTTTAAGGAAAATAGAGG
261 ACTGCTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAG-GG
* ** * *
3890993 CAAAGAAAAGATTT-TAATGCAATAGAAAATCAAGAATATCATTTATTCTAATGAGGAGAATGTG
325 CAAAGAAAAGATTTCT-ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGTGAATGTG
* * * *
3891057 TTTATAGTGCCTAATAACAAAATGAATGAAGATCA-TACAAGAATCCATGTTTGTCTCATTTGAG
389 TTTATAATGCCTAATCACAAAATGAATGAAGATCATTACTAGATTCCATGTTTGTCTCATTTGAG
3891121 GCACGAACTTAGACTTTACAAAA
454 GCACGAACTTAGACTTTACAAAA
* * * ** * * *
3891144 ATAGGTGGGAAAAAAGTCTTTTTTAAGAAACCAAAGTATCAATATGATGTATTCC-AA--ATAAG
1 ATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATG-AATCCTAATGAGAAG
* * *
3891206 ACAATGTTTATGGTGCCTAATCCTG-AAAGTAATAGGGATTAGTATGGGTATTCATGTTTG-CTT
65 ACTATGTTTATGGTGCCTAATCTTGAAAAG-AATAGGGATTAGTATGAGTATTCATGTTTGTC-T
* * * *
3891269 TATTTAAGAAACAAACTTTGATTCTATCAAAAACAGTGAAAAGAAAAGCTTTTGTTGCGACACTA
128 TATTTAAGAAACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCA
* * * * * *
3891334 AAGCAAT-GATTTCATGCATCCTATTGAGGGGAATGTGTTTTGGCTTCCAAATCTTGAAAAGAAT
193 AAGC-ATCAATGTCACGTATCCTATTGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAAT
* * * * * * * *
3891398 AGAGACTGTTACGGGAGTTGATGCTTGTCTTATTTAAGTGATGAACATTGATTTTATGGAAAATA
257 AGAGACTGCTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATA
* * * * * * * * *
3891463 AGGCAAAGAAAAGATTTTTGTGTAAAAGAAAATCGTCAATACCATTCATCCTAAAGAGGAGAATG
322 GGGCAAAGAAAAGATTTCTATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGTGAATG
** * * ** * * *
3891528 TGTTTATTGTACGTAATCACAAAATGAGGGAAGATCATTAGTAGAATCCTTGTTTGTCTCATTTG
387 TGTTTATAATGCCTAATCACAAAATGAATGAAGATCATTACTAGATTCCATGTTTGTCTCATTTG
* *
3891593 AAGCACGAACATAGACTTTACAAAA
452 AGGCACGAACTTAGACTTTACAAAA
* * * * *
3891618 ATTTGTGGGAAAAATGCCTTTCTTGC-ATGACCAAA-CTATCAATATCG-TGTATCCTAATAAGA
1 ATTGGTGGGAAAAAAGCCTTTCTTGCGA-AACCAAAGC-ATCAATAT-GATGAATCCTAATGAGA
* * * * * * *
3891680 AGACAATGTTTATAGTGCCTCACCTTGAAAAAAATGGGGATTAGTATGAGTATTCTTGTTTGTCT
63 AGACTATGTTTATGGTGCCTAATCTTGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCT
* * * * *
3891745 AATTTAA-AAGACAAA-TTTCAATTCTATCAAAAATGGAGGAAAGAAAAGCTTTTCTTGCGGCAC
128 TATTTAAGAA-ACAAACTTT-GATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACAC
* * * *
3891808 CAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTAAAAAAAA
191 CAAAGCATCAATGTCACGTATCCTATTGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAA
* * * * *
3891873 TGGAGACTGCCACAAGAATCGATGCTTGTTTTATTTAAGGGATGAACTTTGATTTAAGGGAAAAT
256 TAGAGACTGCTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAAT
* * * * * * * * *
3891938 GGGGCAAAGAAAAGATTTCCATGAAAAATAAAATCATTAAAATCAGTTACCCTAATGAGTTGAAT
321 AGGGCAAAGAAAAGATTTCTATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGTGAAT
* * * * *
3892003 GTGTGTATCATGCCTAATCACATAAA-GAATGAAGATCATTACTAG-TTTCATGTTTGTCACATA
386 GTGTTTATAATGCCTAATCACA-AAATGAATGAAGATCATTACTAGATTCCATGTTTGTCTCATT
*
3892066 TGAGGCACAAACTTAGACTTTACAAAA
450 TGAGGCACGAACTTAGACTTTACAAAA
* * *
3892093 ATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGAA-CCAAATTAGAAGA
1 ATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGAATCCTAATGAGAAGA
* *
3892157 CTATGCTTATGGTGCCTAATCTTGAAAAGAAT-GGGAATTAGTATGAGTATTCATGTTTGCCTTA
66 CTATGTTTATGGTGCCTAATCTTGAAAAGAATAGGG-ATTAGTATGAGTATTCATGTTTGTCTTA
* * * * * *
3892221 TTTAAGAAACACACTTTGTTTCTATAAAAAACGATGGAAAGGAAAGCTTTTCTTGCAACACCAAA
130 TTTAAGAAACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAA
* * * * * * * ** *
3892286 GCGTCAATGTCATGTATCCTAATGAAGGGAATGTGATTTGCCTTCCCAAGCTAGAACGGAATGGA
195 GCATCAATGTCACGTATCCTATTGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATAGA
*
3892351 CACTGCTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGG
260 GACTGCTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGG
* *
3892416 CAAAGAAAAGATTTCTACGCAAAAGAAAATCATCAATATCATTTATCGTAATGAGGTGAATGTGT
325 CAAAGAAAAGATTTCTATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGTGAATGTGT
* * *
3892481 TTGTAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGG
390 TTATAATGCCTAATCACAAAATGAATGAAGATCATTACTAGATTCCATGTTTGTCTCATTTGAGG
*
3892546 CACCAACTT-GACTTTACAAAA
455 CACGAACTTAGACTTTACAAAA
* * * * * *
3892567 ATTAGTCGGAAGAAAGCCTTTCTTGCGAACCCAAAGCTTCAATATGATGCATCCTAATGAGAAGA
1 ATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGAATCCTAATGAGAAGA
* * * * * *
3892632 CAAAGTTTACGGTGCCTAATCTTGACAGGAATAGGGATTAGTTTGAGTATTCATGTTTGTCTTAT
66 CTATGTTTATGGTGCCTAATCTTGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTAT
* * *
3892697 TTAAGAAACAAACTTTGATT-TCATCAAAAACGGAGGAAA-AAAATTCTTTTCTTGCGACCCCAA
131 TTAAGAAACAAACTTTGATTCT-ATCAAAAACGGTGGAAAGAAAA-GCTTTTCTTGCGACACCAA
* * * * *
3892760 AGCATCAATGTC-CTGTATCCTATTGAAGAGAAGGTGTTTTGGCTTCCAAATCTTAAAAAGAATG
194 AGCATCAATGTCAC-GTATCCTATTGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATA
* ** * * *
3892824 GAGACTG-TGACGGGAATCGATGCTTGTCTTATTTAAGGGATGAACAATGATTTTATGGAAAGTA
258 GAGACTGCT-ACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATA
* * * * * *
3892888 AGGCGAAA-AAAAGATTT-TCGTGGAAAAGAAAATCATCAATATCATTTATCTTAAAGAGGAGAA
322 GGGC-AAAGAAAAGATTTCT-ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGTGAA
* ** * * * * * * *
3892951 TGTGCTTATTGTACCTAATCACAAAAT-AAGGGAAGATCATTAGTAGAATCCATATTTATATCAT
385 TGTGTTTATAATGCCTAATCACAAAATGAA-TGAAGATCATTACTAGATTCCATGTTTGTCTCAT
*
3893015 TTGAGGCACGAACATAGACTTTACAAAA
449 TTGAGGCACGAACTTAGACTTTACAAAA
* * * * * * *
3893043 ATTGGTGGGAAACATGCCTTTCTTGCGATACCAAAACATCAATATCG-TGTATCCTAATAAGAAA
1 ATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATAT-GATGAATCCTAATGAGAAG
* * * * * *
3893107 ACAATGTTTATGGTGCCTAACCTTGAAAAAAATAGGGATTAGTAAGAGTATTCTTGTTTGTCTAA
65 ACTATGTTTATGGTGCCTAATCTTGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTA
* * * * *
3893172 TTTAAGAGACAGA-TTTCAATTCTATCAAAAACGGCGGAAAGAAAAGCTTTTCTTGCGACCCCAA
130 TTTAAGAAACAAACTTT-GATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAA
* * * * ** * * *
3893236 AGAATTAATGTCATGTATCCTATTAAAGGGAATACGTTTTGGTTTCTCAATCTTGAAAAGAATCG
194 AGCATCAATGTCACGTATCCTATTGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATAG
* * * ** * * *
3893301 AAACTGCTATGAGAATCGATGCTTGTCTTTTTTAAGATATAAACTTTGATATAAAGGAAAACAGG
259 AGACTGCTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGG
* * * * * *
3893366 GTAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAAAATCATTTATCCTAACGAGTTAAATGTG
324 GCAAAGAAAAGATTTCTATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGTGAATGTG
* * *
3893431 TTTATAATGCCTAATCA-AAAACGAATGAAGATCATTACTCG-TTCCATGTTTGTGTCATTTGAG
389 TTTATAATGCCTAATCACAAAATGAATGAAGATCATTACTAGATTCCATGTTTGTCTCATTTGAG
3893494 GCAC
454 GCAC
3893498 TGTTCTAAAT
Statistics
Matches: 5588, Mismatches: 948, Indels: 195
0.83 0.14 0.03
Matches are distributed among these distances:
472 10 0.00
473 543 0.10
474 1134 0.20
475 1470 0.26
476 1633 0.29
477 793 0.14
478 5 0.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.31
Consensus pattern (476 bp):
ATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGAATCCTAATGAGAAGA
CTATGTTTATGGTGCCTAATCTTGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTAT
TTAAGAAACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAG
CATCAATGTCACGTATCCTATTGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATAGAG
ACTGCTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGC
AAAGAAAAGATTTCTATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGTGAATGTGTT
TATAATGCCTAATCACAAAATGAATGAAGATCATTACTAGATTCCATGTTTGTCTCATTTGAGGC
ACGAACTTAGACTTTACAAAA
Found at i:3888779 original size:949 final size:948
Alignment explanation
Indices: 3886395--3893497 Score: 8010
Period size: 949 Copynumber: 7.5 Consensus size: 948
3886385 TCACATTGGT
* * * *
3886395 TGGGAAAAATGCCTTTCTTGC-AAGACCAAAA-CATCAATATCG-TGTATCCTAATGAGAAGACA
1 TGGGAAAAAAGCCTTTCTTGCGAA-A-CAAAAGCTTCAATAT-GATGAATCCTAATGAGAAGACT
* * * * * * * * *
3886457 ATGTTTAGGGTGCTTAACCTTGAAAAAAATAGAGATTAGTATGAGTATTCTTCTTTGTCTAATTT
63 ATGTTTATGGTGCCTAATCTTGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGGCTTATTT
** ** * *** *
3886522 AAGGGACAAACTTCAATTTTATCAAAAACGACAAAAAGAAAAGCTTTTCTTGAGACACCAAAGCA
128 AAGAAACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
* * **
3886587 TCAATGTCATGTATCCTGTTGAGGGGAATATGTTTTGGCTTCCCAATCTTGAAAAGAACGGAGAC
193 TCAATGTCATGTATCCTATTGAAGGGAATATGTTTTGGCTTCCCAATCTTGAAAAGAATAGAGAC
* * * * * * * *
3886652 TATTACGAGAATCGATGCTGGTCTCATTTAAGGGGTGAGCTTTGATTTAAAGGAAAACAGGGTAA
258 TATTGCTAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAA
* *
3886717 AGAAAAGATTTCCATGCAAAAAAAAAATCATCAAAATCATTTATCCTAATGAGTTGAATGTGTTT
323 AGAAAAGATTTCCATGC-AAAAGAAAATCATCAAAATCATTTATCCTAATGAGTTGAAAGTGTTT
* * * * *
3886782 GTTATGCCTAATCACAAAAAGAATGAAGAACATTACTAATTCCATGTTTGTCTTATTTGTA-GCA
387 ATAATGCCTAATCACAAAAAGAATGAAGATCATTACTAGTTCCATGTTTGTCTCATTTG-AGGCA
* * * * *
3886846 TAAACTTAGTCTTTACAAATATTGGTGGGAAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATA
451 CAAACTTAGACTTTACAAAAATTGGTAGG-AAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATA
*
3886911 TGATGAATCCTAATGAGAAGACTATGTTTATGCTGCCTAATCTTGAAAAGAATAGGAATTAGTAT
515 TGATGAATCCTAATGAGAAGAC-ATGTTTATGCTGCCTAATCTTGAAAAGAAT-GGGATTAGTAT
* * *
3886976 GAGTATTCATGTTTGCCTTATTTAAGAAACAAACTTTGATTCTATAAAAAACGATGGAAAGGAAA
578 GAGTATTCATGTTTGCCTTATTTAAGAAACAAACTTTGATTCTATCAAAAACGAGGGAAAGAAAA
* * * *
3887041 CCTTTTCTTGCGACACCAAAGCGTCAATGTCACGTATCCTAATGAAGGGAGTGTGTTTTGGCATC
643 GCTTTTCTTGCGACACCAAAGCATCAATGTCACGTATCCTAATGAAGGGAATGTGTTTTGGCTTC
* * *
3887106 CCAATCTTGAAAGGAATAGACACTGCTACGAGAATCGATGCTTGTCTTATTTAAGGGGTGAACTT
708 CCAATCTTGAAAGGAATGGAGACTGCTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTT
* * *
3887171 TGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCTACGCAAAAGAAAATGATCTATATTATTTA
773 TGATTTAAAGGAAAATAGGGCAAAGAAAAGATTT-TACGCAAAAGAAAATCATCAATATCATTTA
* * * *
3887236 TCCTAACGAGGTGAATGCGTTTATCATGCCTAATCACAAAATGAATAAAGATCATTGCTAGAGTC
837 TCCTAATGAGGTGAATGTGTTTATCATGCCTAATCACAAAATGAATGAAGATCATTGCTAGAATC
* * * *
3887301 CATGTTTTTCTCATTTGAGGCACGGACATAGATTTTACAAAAATTAG
902 CATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTAG
* * * *
3887348 TGAGAAAAAA-CCTTTATTGCGAAACAAAAGCTTTAATAAGATGAATCCTAATGAGAAGACTATG
1 TGGGAAAAAAGCCTTTCTTGCGAAACAAAAGCTTCAATATGATGAATCCTAATGAGAAGACTATG
* *
3887412 TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTACTG-GTATTCATGTTTGGCTTATTTAA
66 TTTATGGTGCCTAATCTTGAAAAGAATAGGGATTAGTA-TGAGTATTCATGTTTGGCTTATTTAA
* * * * ** * *
3887476 GAAATAAACTTTGATTCTATCAAAAACGGTGGAAAGAAACGCTTTTCTTACGGGACCAAAGTATG
130 GAAACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
* * * * *
3887541 AATGTCAAGTATCTTATTGAAGGGAATATGTTTTGGCTTCCCCATCATGAAAAGAATAGTGACTA
195 AATGTCATGTATCCTATTGAAGGGAATATGTTTTGGCTTCCCAATCTTGAAAAGAATAGAGACTA
* * * ** *
3887606 TT-ATGAGAATTGATGCTTGTCTTATTTTAGGGATGAACTTTGATTTATGGGAAAATAAGGCAAA
260 TTGCT-AGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAA
* *
3887670 GAAAAGATTTCCATGCAAAATAAAATCATCAAAATCAATTATCCTAATCG-GTTGAAAGTGTTTA
324 GAAAAGATTTCCATGCAAAAGAAAATCATCAAAATCATTTATCCTAAT-GAGTTGAAAGTGTTTA
3887734 TAATGCCTAATCACAAAAAGAATGAAGATCATTACTAGTTCCATGTTTGTCTCATTTGAGGCACA
388 TAATGCCTAATCACAAAAAGAATGAAGATCATTACTAGTTCCATGTTTGTCTCATTTGAGGCACA
* * *
3887799 AACTTACACTTTACAAAAAATGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGA
453 AACTTAGACTTTACAAAAATTGGTAGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGA
3887864 TGAATCCTAATGAGAAGAC-TGTTTATGCTGCCTAATCTTGAAAAGAATGGGAATTAGTATGAGT
518 TGAATCCTAATGAGAAGACATGTTTATGCTGCCTAATCTTGAAAAGAATGGG-ATTAGTATGAGT
* *
3887928 ATTCATGTTTGCCTTATTTAAGAAACAAACTTTGATTCTATCAAAAATGAGGGAAAGGAAAGCTT
582 ATTCATGTTTGCCTTATTTAAGAAACAAACTTTGATTCTATCAAAAACGAGGGAAAGAAAAGCTT
* * * * * * *
3887993 TTCTTGTGACACCAAAGCGTCAATGTCACATATCCTAATAAAGAGATTGTGTTTTGGCTTCCTAA
647 TTCTTGCGACACCAAAGCATCAATGTCACGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAA
* * * *
3888058 TCTTGAAAGGAATAGACACTGCTACGAGAATCGATGCTTGTCGTATTTAAGGGGTGAACTTTGAT
712 TCTTGAAAGGAATGGAGACTGCTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGAT
* * *
3888123 TTAAAGGAAAATAGGGCAAAGAAAAGATTTCTACGCAAAAGAAAATGATCTATATTATTTATCCT
777 TTAAAGGAAAATAGGGCAAAGAAAAGATTT-TACGCAAAAGAAAATCATCAATATCATTTATCCT
* * * * *
3888188 AACGAGGTGAATGCGTTTATCGTGCCTAATCACAAAATGAATAAAGATCATTGCTAGAGTCCATG
841 AATGAGGTGAATGTGTTTATCATGCCTAATCACAAAATGAATGAAGATCATTGCTAGAATCCATG
* * *
3888253 TTTTTCTCATTTGAGGCACGAACATAGATTTTACAAAAATTAG
906 TTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTAG
* * * *
3888296 TGAGAAAAAACCCTTTCTTGCGAAACAAAAGCTTTAATATGATGAATCCTAATGAGAAAACTATG
1 TGGGAAAAAAGCCTTTCTTGCGAAACAAAAGCTTCAATATGATGAATCCTAATGAGAAGACTATG
*
3888361 TTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATTG-GTATTCATGTTTGGCTTATTTAA
66 TTTATGGTGCCTAATCTTGAAAAGAATAGGGATTAGTA-TGAGTATTCATGTTTGGCTTATTTAA
* ** * *
3888425 GAAACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTATGAGACCAAAGCATG
130 GAAACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
*
3888490 AATGTCATGTATCCTATTGAAGGGAATATGTTTTGGCTTCCCAATCTTGAAAAGAATAGTGACTA
195 AATGTCATGTATCCTATTGAAGGGAATATGTTTTGGCTTCCCAATCTTGAAAAGAATAGAGACTA
* * * *
3888555 TTGCTAGAATTGATGCTTGTCTTATTTTAGGGATGAACTTTGATTTATAGGAAAATAGGGCAAAA
260 TTGCTAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAG
* * *
3888620 AAAAGATTCCCATGCAAAATAAAATCATCAAAATCAATTATCCTAATGAGTTGAAAGTGTTTATA
325 AAAAGATTTCCATGCAAAAGAAAATCATCAAAATCATTTATCCTAATGAGTTGAAAGTGTTTATA
3888685 ATGCCTAATCACAAAAAGAATGAAGATCATTACTAGTTCCATGTTTGTCTCATTTGAGGCACAAA
390 ATGCCTAATCACAAAAAGAATGAAGATCATTACTAGTTCCATGTTTGTCTCATTTGAGGCACAAA
*
3888750 CTTAGAGTTTACAAAAATTGGTAGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATG
455 CTTAGACTTTACAAAAATTGGTAGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATG
* *
3888815 AATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGAA
520 AATCCTAATGAGAAGAC-ATGTTTATGCTGCCTAATCTTGAAAAGAAT-GGGATTAGTATGAGTA
* * * * *
3888880 TTCATGTTTGGCTTTTTTAAGAAGCAAACTTTGATTCTATAAAAAACGATGGAAAGAAAAGCTTT
583 TTCATGTTTGCCTTATTTAAGAAACAAACTTTGATTCTATCAAAAACGAGGGAAAGAAAAGCTTT
* *
3888945 TCTTACGACACCAAAGCATCAATGTCACGTATCCTAGTGAAGGGAATGTGTTTTGGCTTCCCAAT
648 TCTTGCGACACCAAAGCATCAATGTCACGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAAT
* * *
3889010 CTTGAAAGGAATAGG-GACTACCT-CGAGAATTGATGTTTGTCTTATTTAAGGGATGAACTTTGA
713 CTTGAAAGGAAT-GGAGACT-GCTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGA
* * * * * * *
3889073 TTTAAAAG-AATTAGAGCAAAGAAAAGATTTTCATGCAAGATAAAATC-TACAAAATCATTTATC
776 TTTAAAGGAAAATAGGGCAAAGAAAAGATTTT-ACGCAAAAGAAAATCAT-CAATATCATTTATC
* * * * *
3889136 CTAATGAGTTGAATGTGTTTATAATACCTAATCAACAAAA-GAATGAAGATCATTACTAG-TTCC
839 CTAATGAGGTGAATGTGTTTATCATGCCTAATC-ACAAAATGAATGAAGATCATTGCTAGAATCC
* * *
3889199 ATGTTTGTCTCATTTGAGGCACAAACTTAGACTTCACAAAAATTGG
903 ATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTAG
* * * * *
3889245 TTGGAAAAAAGCCATTCTTGCGAAGCTAAAG-TATCAATATGATGAATTCTAATGAGAAGACTAT
1 TGGGAAAAAAGCCTTTCTTGCGAAACAAAAGCT-TCAATATGATGAATCCTAATGAGAAGACTAT
* * *
3889309 GTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTGATGTTTGCCTTATTTAA
65 GTTTATGGTGCCTAATCTTGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGGCTTATTTAA
* * * * * * * *
3889374 G-AACGAACTTTGATTCTATCATAAACGATGAAAAAAAAAGCCTTTCTTGCAACCCCAAAGCCTC
130 GAAACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
* ** * * * * * * *
3889438 AATGTGACATATCCTAATGAAGGGAGTGTGTTTTGGCTTCCCAAT-TTGGAAAGGATTG-GA-GA
195 AATGTCATGTATCCTATTGAAGGGAATATGTTTTGGCTTCCCAATCTTGAAAAGAATAGAGACTA
* *
3889500 TTGCTTCAAGAATCGATGCTTGTCTTATTTAAAGGATGAACTTTGATTTAAAGGAAAAGAGGGCA
260 TTGC-T--AGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCA
* * * * * *
3889565 AAGGAAAGATTTCTACA-GAAAAAAAAAATCATCAATATCATTTATCCTAATGAGGTGAATGTGT
322 AAGAAAAGATTTC--CATGCAAAAGAAAATCATCAAAATCATTTATCCTAATGAGTTGAAAGTGT
* * * * * * *
3889629 TTATAGTGACTAATCACAAAATGAATGAAGATTATTTCCAGAATCCATGTTTGTCTCATTTGAGG
385 TTATAATGCCTAATCACAAAAAGAATGAAGATCATTACTAG-TTCCATGTTTGTCTCATTTGAGG
* * *
3889694 CACGAACTTAGACTTTACAAAAATTAGTGAGG-AAAAAGCCTTTCTTGCAAAACCAAAGCTTCAA
449 CACAAACTTAGACTTTACAAAAATTGGT-AGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAA
* * * * *
3889758 TATGATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTTGT
513 TATGATGAATCCTAATGAGAAGAC-ATGTTTATGCTGCCTAATCTTGAAAAGAAT-GGGATTAGT
* * * * * * * *
3889823 TTGAATATTCTTGTTTTCCTTATTAAAAAAACAAACTTTGATTCTATTAAAAACGATGGAAAGAA
576 ATGAGTATTCATGTTTGCCTTATTTAAGAAACAAACTTTGATTCTATCAAAAACGAGGGAAAGAA
** * * * *
3889888 AAGCTTTTCTTATGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGATTTGCCT
641 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCACGTATCCTAATGAAGGGAATGTGTTTTGGCT
* * * * * * * * * * *
3889953 TTCAAATGTTGAAAAGAATGGAGATTGTTGCGGGAATAGACGCTTGCCTTATTTAAGGGATGAAC
706 TCCCAATCTTGAAAGGAATGGAGACTGCTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAAC
* * * * * *
3890018 TTTGATTTTATGAAAAATAAGGCAAAGAAACGATTTT-CGTGGAAAAGAAAATCATCAATATCAT
771 TTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTTAC--GCAAAAGAAAATCATCAATATCAT
* * * ** * * * ** *
3890082 TTATCTTAAAGAGGAGAATGTGTTTATTTTACCTTATCACAAAATTAGGGAAGATCATTAG-TAA
834 TTATCCTAATGAGGTGAATGTGTTTATCATGCCTAATCACAAAATGAATGAAGATCATT-GCTAG
* *
3890146 AATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATAAG
898 AATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTAG
* * * * *
3890197 TGGGAAAAAGGCCTTTCTTGTGAGACCAAAA-CATCAATATCG-TGTATCCTAATGAGAAGA-TA
1 TGGGAAAAAAGCCTTTCTTGCGA-AACAAAAGCTTCAATAT-GATGAATCCTAATGAGAAGACT-
* * * * *
3890259 ATGTTTATGGTGCCTAACCTTGAAAAAAAATAGGGATTAGTATGAGTATTCTTGTTTGTCTAATT
63 ATGTTTATGGTGCCTAATCTTG-AAAAGAATAGGGATTAGTATGAGTATTCATGTTTGGCTTATT
* * * *
3890324 TAAGAGACAAA-TTTCAATTCTATCAAAAATGGCGAAAAGAAAAGCTTTTCTTGCGACACCAAAG
127 TAAGAAACAAACTTT-GATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAG
*
3890388 CATCAATGTCATGTATCCTATTGAAGGGAATATGTTTTGGCTTTCCAATCTTGAAAAGAATAGAG
191 CATCAATGTCATGTATCCTATTGAAGGGAATATGTTTTGGCTTCCCAATCTTGAAAAGAATAGAG
* * * * * *
3890453 ACTATTACGAGAATCAATGCTTTTCTTATTTAAGGGATGAACTTTGATTTAAATGAAAATAGGGT
256 ACTATTGCTAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGC
* * **
3890518 AATGAAAAGATTTCCATGCAAAAGAAAATCATCAAAATCATTTATTCTAGCGAGTTGAATA-TGT
321 AAAGAAAAGATTTCCATGCAAAAGAAAATCATCAAAATCATTTATCCTAATGAGTTGAA-AGTGT
* * * *
3890582 TTATAGTGCCTAATCACAAAAAGAATGAAGATCATTATTAGTTTCATGTTTGTCTTATTTGAGGC
385 TTATAATGCCTAATCACAAAAAGAATGAAGATCATTACTAGTTCCATGTTTGTCTCATTTGAGGC
* * * **
3890647 ACAAGCTTAGACTTTACAAAAATTGG-AGAGAAAAAAGCTTTTCTTGCGAAATGAAAGCATCAAT
450 ACAAACTTAGACTTTACAAAAATTGGTAG-GAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAAT
** * * *
3890711 ATGATGAATCCTCCTAAGAAGACTATGTTTATGGC-ACCTAATCTTGGAAAGAATAGGGATTAGT
514 ATGATGAATCCTAATGAGAAGAC-ATGTTTAT-GCTGCCTAATCTTGAAAAGAAT-GGGATTAGT
* *
3890775 ATGAGTATTCATGTTTGTCTTATTTAAGAAACAAACTTTGATTATATCAAAAACG-GTGGAAAGA
576 ATGAGTATTCATGTTTGCCTTATTTAAGAAACAAACTTTGATTCTATCAAAAACGAG-GGAAAGA
* * ** *
3890839 AAAGCTGTTCTTGCAACACCAAAGCATCAATGTCACGTATCCTAATGAAAAGAGTGTGTTTTGGC
640 AAAGCTTTTCTTGCGACACCAAAGCATCAATGTCACGTATCCTAATGAAGGGAATGTGTTTTGGC
* * ** * * * * **
3890904 TTCCCAATCTTGAAAGGAATGGATACTACTACTTGAATTGATGCCTGTCTCATTCAAGATATGAA
705 TTCCCAATCTTGAAAGGAATGGAGACTGCTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAA
* * * * **
3890969 CTTTAATTTTAAGGAAAATAGAGGCAAAGAAAAGATTTTAATGCAATAGAAAATCAAGAATATCA
770 CTTTGATTTAAAGGAAAATAG-GGCAAAGAAAAGATTTT-ACGCAAAAGAAAATCATCAATATCA
* * * * *
3891034 TTTATTCTAATGAGGAGAATGTGTTTAT-AGTGCCTAATAACAAAATGAATGAAGATCA-TACAA
833 TTTATCCTAATGAGGTGAATGTGTTTATCA-TGCCTAATCACAAAATGAATGAAGATCATTGCTA
3891097 GAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAA-TAGG
897 GAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTA-G
* * ** * * * *
3891149 TGGGAAAAAAGTCTTTTTTAAGAAACCAAAG-TATCAATATGATGTATTCC-AA--ATAAGACAA
1 TGGGAAAAAAGCCTTTCTTGCGAAACAAAAGCT-TCAATATGATG-AATCCTAATGAGAAGACTA
* *
3891210 TGTTTATGGTGCCTAATCCTG-AAAGTAATAGGGATTAGTATGGGTATTCATGTTT-GCTTTATT
64 TGTTTATGGTGCCTAATCTTGAAAAG-AATAGGGATTAGTATGAGTATTCATGTTTGGC-TTATT
* * *
3891273 TAAGAAACAAACTTTGATTCTATCAAAAACAGTGAAAAGAAAAGCTTTTGTTGCGACACTAAAGC
127 TAAGAAACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGC
* * * * * *
3891338 AAT-GATTTCATGCATCCTATTGAGGGGAATGTGTTTTGGCTTCCAAATCTTGAAAAGAATAGAG
192 -ATCAATGTCATGTATCCTATTGAAGGGAATATGTTTTGGCTTCCCAATCTTGAAAAGAATAGAG
* * ** * * * * * * *
3891402 ACTGTTACGGGAGTTGATGCTTGTCTTATTTAAGTGATGAACATTGATTTTATGGAAAATAAGGC
256 ACTATTGCTAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGC
*** * * * * * * ** *
3891467 AAAGAAAAGATTTTTGTGTAAAAGAAAATCGTCAATACCATTCATCCTAAAGAGGAGAATGTGTT
321 AAAGAAAAGATTTCCATGCAAAAGAAAATCATCAAAATCATTTATCCTAATGAGTTGAAAGTGTT
** * * * ** * * * *
3891532 TATTGTACGTAATCACAAAATGAGGGAAGATCATTAGTAGAATCCTTGTTTGTCTCATTTGAAGC
386 TATAATGCCTAATCACAAAAAGAATGAAGATCATTACTAG-TTCCATGTTTGTCTCATTTGAGGC
* * * * * **
3891597 ACGAACATAGACTTTACAAAAATTTGTGGGAAAAATGCCTTTCTTGCATGACCAAA-CTATCAAT
450 ACAAACTTAGACTTTACAAAAATTGGTAGGAAAAAAGCCTTTCTTGCAAAACCAAAGC-ATCAAT
* * * * *
3891661 ATCG-TGTATCCTAATAAGAAGACAATGTTTATAG-TGCCTCACCTTGAAAAAAATGGGGATTAG
514 AT-GATGAATCCTAATGAGAAGAC-ATGTTTAT-GCTGCCTAATCTTGAAAAGAAT-GGGATTAG
* * * * *
3891724 TATGAGTATTCTTGTTTGTCTAATTTAA-AAGACAAA-TTTCAATTCTATCAAAAATG-GAGGAA
575 TATGAGTATTCATGTTTGCCTTATTTAAGAA-ACAAACTTT-GATTCTATCAAAAACGAG-GGAA
* *
3891786 AGAAAAGCTTTTCTTGCGGCACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTT
637 AGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCACGTATCCTAATGAAGGGAATGTGTTTT
* ** * * *
3891851 GGCTTCCCAATCTTAAAAAAAATGGAGACTGCCACAAGAATCGATGCTTGTTTTATTTAAGGGAT
702 GGCTTCCCAATCTTGAAAGGAATGGAGACTGCTACGAGAATCGATGCTTGTCTTATTTAAGGGAT
* * * * * * * *
3891916 GAACTTTGATTTAAGGGAAAATGGGGCAAAGAAAAGATTTCCATGAAAAATAAAATCATTAAAAT
767 GAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTT-TACGCAAAAGAAAATCATCAATAT
* * * * *
3891981 CAGTTACCCTAATGAGTTGAATGTGTGTATCATGCCTAATCACATAAA-GAATGAAGATCATTAC
831 CATTTATCCTAATGAGGTGAATGTGTTTATCATGCCTAATCACA-AAATGAATGAAGATCATTGC
* * * * * *
3892045 TAG-TTTCATGTTTGTCACATATGAGGCACAAACTTAGACTTTACAAAAATTGG
895 TAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTAG
* * * * *
3892098 TGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGAA-CCAAATTAGAAGACTATG
1 TGGGAAAAAAGCCTTTCTTGCGAAACAAAAGCTTCAATATGATGAATCCTAATGAGAAGACTATG
* *
3892162 CTTATGGTGCCTAATCTTGAAAAGAAT-GGGAATTAGTATGAGTATTCATGTTTGCCTTATTTAA
66 TTTATGGTGCCTAATCTTGAAAAGAATAGGG-ATTAGTATGAGTATTCATGTTTGGCTTATTTAA
* * * * * * * *
3892226 GAAACACACTTTGTTTCTATAAAAAACGATGGAAAGGAAAGCTTTTCTTGCAACACCAAAGCGTC
130 GAAACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
* * * * * * ** * * *
3892291 AATGTCATGTATCCTAATGAAGGGAATGTGATTTGCCTTCCCAAGCTAGAACGGAATGGACACTG
195 AATGTCATGTATCCTATTGAAGGGAATATGTTTTGGCTTCCCAATCTTGAAAAGAATAGAGACTA
* * *
3892356 CTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAG
260 TTGCTAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAG
* * * * * * *
3892421 AAAAGATTTCTACGCAAAAGAAAATCATCAATATCATTTATCGTAATGAGGTGAATGTGTTTGTA
325 AAAAGATTTCCATGCAAAAGAAAATCATCAAAATCATTTATCCTAATGAGTTGAAAGTGTTTATA
* * * *
3892486 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACCA
390 ATGCCTAATCACAAAAAGAATGAAGATCATTACTAG-TTCCATGTTTGTCTCATTTGAGGCACAA
* * * * * *
3892551 ACTT-GACTTTACAAAAATTAGTCGGAAGAAAGCCTTTCTTGCGAACCCAAAGCTTCAATATGAT
454 ACTTAGACTTTACAAAAATTGGTAGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGAT
* * * * * * *
3892615 GCATCCTAATGAGAAGACAAAGTTTACGGTGCCTAATCTTGACAGGAATAGGGATTAGTTTGAGT
519 GAATCCTAATGAGAAGAC-ATGTTTATGCTGCCTAATCTTGAAAAGAAT-GGGATTAGTATGAGT
* *
3892680 ATTCATGTTTGTCTTATTTAAGAAACAAACTTTGATT-TCATCAAAAACG-GAGGAAA-AAAATT
582 ATTCATGTTTGCCTTATTTAAGAAACAAACTTTGATTCT-ATCAAAAACGAG-GGAAAGAAAA-G
* * * *
3892742 CTTTTCTTGCGACCCCAAAGCATCAATGTC-CTGTATCCTATTGAAGAGAAGGTGTTTTGGCTTC
644 CTTTTCTTGCGACACCAAAGCATCAATGTCAC-GTATCCTAATGAAGGGAATGTGTTTTGGCTTC
* * * * *
3892806 CAAATCTTAAAAAGAATGGAGACTG-TGACGGGAATCGATGCTTGTCTTATTTAAGGGATGAACA
708 CCAATCTTGAAAGGAATGGAGACTGCT-ACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACT
* * * * * *
3892870 ATGATTTTATGGAAAGTAAGGCGAAA-AAAAGATTTT-CGTGGAAAAGAAAATCATCAATATCAT
772 TTGATTTAAAGGAAAATAGGGC-AAAGAAAAGATTTTAC--GCAAAAGAAAATCATCAATATCAT
* * * * ** * *
3892933 TTATCTTAAAGAGGAGAATGTGCTTATTGTACCTAATCACAAAAT-AAGGGAAGATCATTAG-TA
834 TTATCCTAATGAGGTGAATGTGTTTATCATGCCTAATCACAAAATGAA-TGAAGATCATT-GCTA
* * * * *
3892996 GAATCCATATTTATATCATTTGAGGCACGAACATAGACTTTACAAAAATTGG
897 GAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTAG
* * * * * * * *
3893048 TGGGAAACATGCCTTTCTTGCGATACCAAAA-CATCAATATCG-TGTATCCTAATAAGAAAACAA
1 TGGGAAAAAAGCCTTTCTTGCGA-AACAAAAGCTTCAATAT-GATGAATCCTAATGAGAAGACTA
* * * * * *
3893111 TGTTTATGGTGCCTAACCTTGAAAAAAATAGGGATTAGTAAGAGTATTCTTGTTTGTCTAATTTA
64 TGTTTATGGTGCCTAATCTTGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGGCTTATTTA
* * * * * * *
3893176 AGAGACAGA-TTTCAATTCTATCAAAAACGGCGGAAAGAAAAGCTTTTCTTGCGACCCCAAAGAA
129 AGAAACAAACTTT-GATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
* * * * * * *
3893240 TTAATGTCATGTATCCTATTAAAGGGAATACGTTTTGGTTTCTCAATCTTGAAAAGAATCGAAAC
193 TCAATGTCATGTATCCTATTGAAGGGAATATGTTTTGGCTTCCCAATCTTGAAAAGAATAGAGAC
* * ** * * * *
3893305 TGCTATG--AGAATCGATGCTTGTCTTTTTTAAGATATAAACTTTGATATAAAGGAAAACAGGGT
258 T-AT-TGCTAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGC
*
3893368 AAAGAAAAGATTTCCATGCAAAAGAAAATCATCAAAATCATTTATCCTAACGAGTT-AAATGTGT
321 AAAGAAAAGATTTCCATGCAAAAGAAAATCATCAAAATCATTTATCCTAATGAGTTGAAA-GTGT
* * *
3893432 TTATAATGCCTAATCA-AAAACGAATGAAGATCATTACTCGTTCCATGTTTGTGTCATTTGAGGC
385 TTATAATGCCTAATCACAAAAAGAATGAAGATCATTACTAGTTCCATGTTTGTCTCATTTGAGGC
3893496 AC
450 AC
3893498 TGTTCTAAAT
Statistics
Matches: 5251, Mismatches: 786, Indels: 230
0.84 0.13 0.04
Matches are distributed among these distances:
945 5 0.00
946 3 0.00
947 14 0.00
948 579 0.11
949 1545 0.29
950 1235 0.24
951 735 0.14
952 751 0.14
953 221 0.04
954 147 0.03
955 10 0.00
956 2 0.00
957 4 0.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.31
Consensus pattern (948 bp):
TGGGAAAAAAGCCTTTCTTGCGAAACAAAAGCTTCAATATGATGAATCCTAATGAGAAGACTATG
TTTATGGTGCCTAATCTTGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGGCTTATTTAAG
AAACAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCA
ATGTCATGTATCCTATTGAAGGGAATATGTTTTGGCTTCCCAATCTTGAAAAGAATAGAGACTAT
TGCTAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAAGGAAAATAGGGCAAAGA
AAAGATTTCCATGCAAAAGAAAATCATCAAAATCATTTATCCTAATGAGTTGAAAGTGTTTATAA
TGCCTAATCACAAAAAGAATGAAGATCATTACTAGTTCCATGTTTGTCTCATTTGAGGCACAAAC
TTAGACTTTACAAAAATTGGTAGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGA
ATCCTAATGAGAAGACATGTTTATGCTGCCTAATCTTGAAAAGAATGGGATTAGTATGAGTATTC
ATGTTTGCCTTATTTAAGAAACAAACTTTGATTCTATCAAAAACGAGGGAAAGAAAAGCTTTTCT
TGCGACACCAAAGCATCAATGTCACGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTT
GAAAGGAATGGAGACTGCTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAA
AGGAAAATAGGGCAAAGAAAAGATTTTACGCAAAAGAAAATCATCAATATCATTTATCCTAATGA
GGTGAATGTGTTTATCATGCCTAATCACAAAATGAATGAAGATCATTGCTAGAATCCATGTTTGT
CTCATTTGAGGCACGAACTTAGACTTTACAAAAATTAG
Found at i:3897674 original size:19 final size:18
Alignment explanation
Indices: 3897620--3897677 Score: 62
Period size: 19 Copynumber: 3.1 Consensus size: 18
3897610 ACTACCAGTT
3897620 TCATGTATCGATACAATTG
1 TCATGTATCGATACAA-TG
* *
3897639 TGCATCTATCGAGACAATG
1 T-CATGTATCGATACAATG
*
3897658 ATCATGTATCAATACAATG
1 -TCATGTATCGATACAATG
3897677 T
1 T
3897678 ATCGTATAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
18 1 0.03
19 17 0.53
20 14 0.44
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
Consensus pattern (18 bp):
TCATGTATCGATACAATG
Found at i:3898493 original size:20 final size:19
Alignment explanation
Indices: 3898468--3898540 Score: 76
Period size: 20 Copynumber: 3.7 Consensus size: 19
3898458 CTACCAGTTT
**
3898468 CATGTATCGATACAATTGTC
1 CATGTATCGATACAA-TGAA
3898488 CATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
* *
3898507 CATGTATCGATGCAAAGCATA
1 CATGTATCGATACAATG-A-A
3898528 -ATGTATCGATACA
1 CATGTATCGATACA
3898541 TCTGGGTGAG
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
19 17 0.37
20 28 0.61
21 1 0.02
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.29
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:3908150 original size:52 final size:52
Alignment explanation
Indices: 3908080--3908200 Score: 224
Period size: 52 Copynumber: 2.3 Consensus size: 52
3908070 GAAAATTTAT
*
3908080 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
*
3908132 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
3908184 CTGCATGTATCGATACA
1 CTGCATGTATCGATACA
3908201 AAGATCAGTG
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (52 bp):
CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
Found at i:3908213 original size:52 final size:51
Alignment explanation
Indices: 3908080--3908220 Score: 212
Period size: 52 Copynumber: 2.7 Consensus size: 51
3908070 GAAAATTTAT
3908080 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
* *
3908132 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
*
3908184 CTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 CTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
3908221 ATGTATCGAT
Statistics
Matches: 82, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
51 2 0.02
52 80 0.98
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.33
Consensus pattern (51 bp):
CTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAATTTGC
Found at i:3908227 original size:13 final size:13
Alignment explanation
Indices: 3908209--3908233 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3908199 CAAAGATCAG
3908209 TGTATCGATACAA
1 TGTATCGATACAA
3908222 TGTATCGATACA
1 TGTATCGATACA
3908234 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3908319 original size:13 final size:13
Alignment explanation
Indices: 3908301--3908325 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3908291 CAAAAAAATA
3908301 TGTATCGATACAT
1 TGTATCGATACAT
3908314 TGTATCGATACA
1 TGTATCGATACA
3908326 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3908321 original size:33 final size:33
Alignment explanation
Indices: 3908279--3908345 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
3908269 AGTAGCTTAA
3908279 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
3908312 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
3908345 A
1 A
3908346 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:3922351 original size:52 final size:52
Alignment explanation
Indices: 3922273--3922401 Score: 213
Period size: 52 Copynumber: 2.5 Consensus size: 52
3922263 TGAAATATGA
* *
3922273 AAATTTGCCTGTAGGTATCGATACATTTAATAGTGTATCGATACATCTAGGC
1 AAATTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTAGGC
* * *
3922325 AAATTTACCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTAGGC
3922377 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
3922402 AAGATCAGTG
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 71 1.00
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTAGGC
Found at i:3922412 original size:52 final size:51
Alignment explanation
Indices: 3922273--3922421 Score: 201
Period size: 52 Copynumber: 2.9 Consensus size: 51
3922263 TGAAATATGA
* *
3922273 AAATTTGCCTGTAGGTATCGATACATTTAATAGTGTATCGATACATCTAGGC
1 AAATTTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTAGGC
* * *
3922325 AAATTTACCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTAGGC
*
3922377 AAATTTGCCTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
3922422 AAGATCAGTG
Statistics
Matches: 87, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
51 2 0.02
52 85 0.98
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.34
Consensus pattern (51 bp):
AAATTTGCCTGCATGTATCGATACATTAATAGTGTATCGATACATCTAGGC
Found at i:3922415 original size:20 final size:20
Alignment explanation
Indices: 3922390--3922442 Score: 106
Period size: 20 Copynumber: 2.6 Consensus size: 20
3922380 TTTGCCTGCA
3922390 TGTATCGATACAAAGATCAG
1 TGTATCGATACAAAGATCAG
3922410 TGTATCGATACAAAGATCAG
1 TGTATCGATACAAAGATCAG
3922430 TGTATCGATACAA
1 TGTATCGATACAA
3922443 TGTATCGATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.40, C:0.15, G:0.19, T:0.26
Consensus pattern (20 bp):
TGTATCGATACAAAGATCAG
Found at i:3922448 original size:13 final size:13
Alignment explanation
Indices: 3922430--3922454 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3922420 CAAAGATCAG
3922430 TGTATCGATACAA
1 TGTATCGATACAA
3922443 TGTATCGATACA
1 TGTATCGATACA
3922455 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3922522 original size:19 final size:19
Alignment explanation
Indices: 3922498--3922549 Score: 95
Period size: 19 Copynumber: 2.7 Consensus size: 19
3922488 TAGCTTACAT
3922498 TGTATCGATACAAAACTTA
1 TGTATCGATACAAAACTTA
*
3922517 TGTATCGATACAACACTTA
1 TGTATCGATACAAAACTTA
3922536 TGTATCGATACAAA
1 TGTATCGATACAAA
3922550 TCGTTGAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.40, C:0.17, G:0.12, T:0.31
Consensus pattern (19 bp):
TGTATCGATACAAAACTTA
Found at i:3923461 original size:67 final size:68
Alignment explanation
Indices: 3923339--3923465 Score: 184
Period size: 67 Copynumber: 1.9 Consensus size: 68
3923329 ATTGGGTTTT
* * *
3923339 AAAGATGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGAAAATG
1 AAAGATGATAAAGATGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGAAAATG
3923404 AGA
66 AGA
* * * *
3923407 AAAG-TGATAAAGATGCCAATATGTTGATTCACGGCCAACGATATTGGGCTTAAAGATGA
1 AAAGATGATAAAGATGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGA
3923466 GAAAAAAGAT
Statistics
Matches: 52, Mismatches: 7, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
67 48 0.92
68 4 0.08
ACGTcount: A:0.39, C:0.13, G:0.24, T:0.24
Consensus pattern (68 bp):
AAAGATGATAAAGATGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGAAAATG
AGA
Found at i:3923637 original size:49 final size:49
Alignment explanation
Indices: 3923468--3923853 Score: 366
Period size: 49 Copynumber: 8.0 Consensus size: 49
3923458 AAAGATGAGA
* * * * * * * *
3923468 AAAAAGATGTCAATGTGCTCATTCAAGGCCAGTTACATCGAACTTAAAG
1 AAAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAG
* *
3923517 ATGGAAAAGGTACCAATATGCTGATTCAAGGCCAACTATATTGGACTT----
1 A---AAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAG
* **
3923565 --AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACGTTGGACTTAAAG
1 AAAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAG
*
3923612 AAAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAG
1 AAAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAG
** * *
3923661 ATGAAGGTGCCAATATGCTGATTCAAGGCCAG-TGACATCGGACTT----
1 AAAAAGGTGCCAATATGCTGATTCAAGGCCAGCT-ATATTGGACTTAAAG
*
3923706 --AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAG
1 AAAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAG
* * * **
3923753 ATAAAGGTGCCAATATGCTGATTCAAGGCTAGCGATATTGGACTTGGAG
1 AAAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAG
*** * * *
3923802 GTGACGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGATTTAGAAG
1 AAAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTA-AAG
3923852 AA
1 AA
3923854 GATGCTACCA
Statistics
Matches: 277, Mismatches: 42, Indels: 35
0.78 0.12 0.10
Matches are distributed among these distances:
43 75 0.27
44 1 0.00
49 165 0.60
50 2 0.01
52 34 0.12
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (49 bp):
AAAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAG
Found at i:3923650 original size:92 final size:92
Alignment explanation
Indices: 3923478--3923843 Score: 341
Period size: 92 Copynumber: 3.9 Consensus size: 92
3923468 AAAAAGATGT
* * * * *
3923478 CAATGTGCTCATTCAAGGCCAGTTACATCGAACTTAAAGATGGAAAAGGTACCAATATGCTGATT
1 CAATATGCTGATTCAAGGCCAGCTACATCGGACTTAAAGA---AAAAGGTGCCAATATGCTGATT
* *
3923543 CAAGGCCAACTATATTGGACTTAAAGGTGC
63 CAAGGCCAGCGATATTGGACTTAAAGGTGC
* * *
3923573 CAATGTGCTGATTCAAGGCCAGCTACGTTGGACTTAAAGAAAAAGGTGCCAATATGCTGATTCAA
1 CAATATGCTGATTCAAGGCCAGCTACATCGGACTTAAAGAAAAAGGTGCCAATATGCTGATTCAA
3923638 GGCCAGCGATATTGGACTTAAAGATGAAGGTGC
66 GGCCAGCGATATTGGACTT----A--AAGGTGC
*
3923671 CAATATGCTGATTCAAGGCCAG-TGACATCGGACTT------AAAGGTGCCAATGTGCTGATTCA
1 CAATATGCTGATTCAAGGCCAGCT-ACATCGGACTTAAAGAAAAAGGTGCCAATATGCTGATTCA
*
3923729 AGGCCAGCTATATTGGACTTAAAGATAAAGGTGC
65 AGGCCAGCGATATTGGAC-T-----TAAAGGTGC
* * * * ** *** *
3923763 CAATATGCTGATTCAAGGCTAGCGATATTGGACTTGGAGGTGACGGTGCCAATATGCTGATTCAA
1 CAATATGCTGATTCAAGGCCAGCTACATCGGACTTAAAGAAAAAGGTGCCAATATGCTGATTCAA
3923828 GGCCAGCGATATTGGA
66 GGCCAGCGATATTGGA
3923844 TTTAGAAGAA
Statistics
Matches: 230, Mismatches: 21, Indels: 37
0.80 0.07 0.13
Matches are distributed among these distances:
92 117 0.51
93 1 0.00
94 1 0.00
95 35 0.15
96 1 0.00
97 1 0.00
98 74 0.32
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (92 bp):
CAATATGCTGATTCAAGGCCAGCTACATCGGACTTAAAGAAAAAGGTGCCAATATGCTGATTCAA
GGCCAGCGATATTGGACTTAAAGGTGC
Found at i:3923725 original size:141 final size:140
Alignment explanation
Indices: 3923468--3923833 Score: 498
Period size: 141 Copynumber: 2.6 Consensus size: 140
3923458 AAAGATGAGA
* * * * ** * * * *
3923468 AAAAAGATGTCAATGTGCTCATTCAAGGCCAGTTACATCGAACTTAAAGATGGAAAAGGTACCAA
1 AAAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAT-G--AAGGTGCCAA
* * *
3923533 TATGCTGATTCAAGGCCAACTATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTA
63 TATGCTGATTCAAGGCC-AGTACATCGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTA
*
3923598 CGTTGGACTTAAAG
127 CATTGGACTTAAAG
3923612 AAAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATAT
1 AAAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATAT
*
3923677 GCTGATTCAAGGCCAGTGACATCGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATAT
66 GCTGATTCAAGGCCAGT-ACATCGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACAT
3923742 TGGACTTAAAG
130 TGGACTTAAAG
* * ** * *
3923753 ATAAAGGTGCCAATATGCTGATTCAAGGCTAGCGATATTGGACTTGGAGGTGACGGTGCCAATAT
1 AAAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATAT
3923818 GCTGATTCAAGGCCAG
66 GCTGATTCAAGGCCAG
3923834 CGATATTGGA
Statistics
Matches: 200, Mismatches: 21, Indels: 5
0.88 0.09 0.02
Matches are distributed among these distances:
140 2 0.01
141 155 0.77
143 1 0.00
144 42 0.21
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.25
Consensus pattern (140 bp):
AAAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATAT
GCTGATTCAAGGCCAGTACATCGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATT
GGACTTAAAG
Found at i:3923996 original size:58 final size:58
Alignment explanation
Indices: 3923903--3924464 Score: 493
Period size: 58 Copynumber: 9.7 Consensus size: 58
3923893 CAACTTGTAT
* * * *
3923903 GCTTTTG--AAGGTTGCCTCTGACTTGTGGGCTTTTGAAAAGATACCACTAACTTGTGG
1 GCTTTTGAAAAGGGTGCCACTGACTTGTGGGCTTTTG-AAAGATGCCACTGACTTGTGG
* * * * * * *
3923960 GCTTTTGAAAA-GATACCACTAACTTGTGGGCTTTTGAAGGTTGGCACTGACTTATGG
1 GCTTTTGAAAAGGGTGCCACTGACTTGTGGGCTTTTGAAAGATGCCACTGACTTGTGG
* * *
3924017 GC-TTTGAAAAAGGGTGCCACTGACTTGTGGGCTTTTGAAGGTTGCCACCGACTTGTGG
1 GCTTTTG-AAAAGGGTGCCACTGACTTGTGGGCTTTTGAAAGATGCCACTGACTTGTGG
* * **
3924075 GC-TTTGAGAGAAGGGTGCCACTAATTTGTGGGCTTTCAAAAAGAGTGCCACTGACTTGTGG
1 GCTTTTGA-A-AAGGGTGCCACTGACTTGTGGGCTTT-TGAAAGA-TGCCACTGACTTGTGG
* * * * *
3924136 GCTTTTG--AAGGTTGCCACTGACTTGTGGGCTTTGGGAAAAGGGTGCCACTAATTTGTGG
1 GCTTTTGAAAAGGGTGCCACTGACTTGTGGGCTTT-TG-AAA-GATGCCACTGACTTGTGG
* * * * *
3924195 GC-TTTGAAAAAGAGTGCCACTGACTTATGGACTTTTGAAGGTTGCCACTGACTTGTGG
1 GCTTTTG-AAAAGGGTGCCACTGACTTGTGGGCTTTTGAAAGATGCCACTGACTTGTGG
* *
3924253 GCTTTGGGAAAAGGGTGCCACTGATTTGTGGGC-TTTG-AAGATTGCCACTGACTTGTGG
1 GCTTT-TGAAAAGGGTGCCACTGACTTGTGGGCTTTTGAAAGA-TGCCACTGACTTGTGG
* * * ** *
3924311 GCTTTGGGAGAAGGGTGCCACTGATTTGTGGGC-TTTGATGGTTGCCACTGACTTGTGG
1 GCTTT-TGAAAAGGGTGCCACTGACTTGTGGGCTTTTGAAAGATGCCACTGACTTGTGG
* * * * * * *
3924369 GCTTTGGGAGAAGGGTGCCACGGATTTGTGGGC-TTTGAAGGTTGCCACTGACTTGTTG
1 GCTTT-TGAAAAGGGTGCCACTGACTTGTGGGCTTTTGAAAGATGCCACTGACTTGTGG
* * *
3924427 GC-TTTGAAAAAGATGCCACTGACTTGTGGGCTCTTGAA
1 GCTTTTGAAAAGGGTGCCACTGACTTGTGGGCTTTTGAA
3924465 GGGTGAGGAA
Statistics
Matches: 424, Mismatches: 62, Indels: 38
0.81 0.12 0.07
Matches are distributed among these distances:
56 25 0.06
57 38 0.09
58 241 0.57
59 71 0.17
60 6 0.01
61 39 0.09
62 4 0.01
ACGTcount: A:0.20, C:0.17, G:0.32, T:0.31
Consensus pattern (58 bp):
GCTTTTGAAAAGGGTGCCACTGACTTGTGGGCTTTTGAAAGATGCCACTGACTTGTGG
Found at i:3924123 original size:89 final size:87
Alignment explanation
Indices: 3923909--3924464 Score: 581
Period size: 89 Copynumber: 6.3 Consensus size: 87
3923899 GTATGCTTTT
* * * * *
3923909 GAAGGTTGCCTCTGACTTGTGGGCTTTTG-AAAAGA-TACCACTAACTTGTGGGCTTTTGAAAAG
1 GAAGGGTGCCACTGACTTGTGGGC-TTTGAAAAAGAGTGCCACTGACTTGTGGGCTTTTG-AAGG
* * * *
3923972 ATACCACTAACTTGTGGGCTTT-T
64 TTGCCACTGACTTGTGGGCTTTGA
* * * *
3923995 GAAGGTTGGCACTGACTTATGGGCTTTGAAAAAGGGTGCCACTGACTTGTGGGCTTTTGAAGGTT
1 GAAGGGTGCCACTGACTTGTGGGCTTTGAAAAAGAGTGCCACTGACTTGTGGGCTTTTGAAGGTT
*
3924060 GCCACCGACTTGTGGGCTTTGAGA
66 GCCACTGACTTGTGGGCTTT--GA
* * *
3924084 GAAGGGTGCCACTAATTTGTGGGCTTTCAAAAAGAGTGCCACTGACTTGTGGGCTTTTGAAGGTT
1 GAAGGGTGCCACTGACTTGTGGGCTTTGAAAAAGAGTGCCACTGACTTGTGGGCTTTTGAAGGTT
3924149 GCCACTGACTTGTGGGCTTTGGGA
66 GCCACTGACTTGTGGGCTTT--GA
* * * * *
3924173 AAAGGGTGCCACTAATTTGTGGGCTTTGAAAAAGAGTGCCACTGACTTATGGACTTTTGAAGGTT
1 GAAGGGTGCCACTGACTTGTGGGCTTTGAAAAAGAGTGCCACTGACTTGTGGGCTTTTGAAGGTT
3924238 GCCACTGACTTGTGGGCTTTGGGA
66 GCCACTGACTTGTGGGCTTT--GA
* * * *
3924262 AAAGGGTGCCACTGATTTGTGGGCTTTG---AAGATTGCCACTGACTTGTGGGCTTTGGGAGAAG
1 GAAGGGTGCCACTGACTTGTGGGCTTTGAAAAAGAGTGCCACTGACTTGTGGGCTTT---TGAAG
* *
3924324 GGTGCCACTGATTTGTGGGCTTT--
63 GTTGCCACTGACTTGTGGGCTTTGA
* * * * * * *
3924347 GATGGTTGCCACTGACTTGTGGGCTTTGGGAGAAGGGTGCCACGGATTTGTGGGC-TTTGAAGGT
1 GAAGGGTGCCACTGACTTGTGGGCTTT-GAAAAAGAGTGCCACTGACTTGTGGGCTTTTGAAGGT
*
3924411 TGCCACTGACTTGTTGGCTTTGA
65 TGCCACTGACTTGTGGGCTTTGA
* * *
3924434 AAAAGATGCCACTGACTTGTGGGCTCTTGAA
1 GAAGGGTGCCACTGACTTGTGGGCT-TTGAA
3924465 GGGTGAGGAA
Statistics
Matches: 406, Mismatches: 49, Indels: 29
0.84 0.10 0.06
Matches are distributed among these distances:
85 51 0.13
86 71 0.17
87 44 0.11
88 4 0.01
89 236 0.58
ACGTcount: A:0.21, C:0.17, G:0.32, T:0.31
Consensus pattern (87 bp):
GAAGGGTGCCACTGACTTGTGGGCTTTGAAAAAGAGTGCCACTGACTTGTGGGCTTTTGAAGGTT
GCCACTGACTTGTGGGCTTTGA
Found at i:3924165 original size:147 final size:144
Alignment explanation
Indices: 3923906--3924458 Score: 604
Period size: 147 Copynumber: 3.8 Consensus size: 144
3923896 CTTGTATGCT
* * *
3923906 TTTGAAGGTTGCCTCTGACTTGTGGGCTTTTGAA-AA-GATACCACTAACTTGTGGGCTTTTGAA
1 TTTGAAGGTTGCCACTGACTTGTGGGC-TTTGAAGAAGGGTGCCACTAACTTGTGGGC-TTTGAA
* * * *
3923969 AAGA-TACCACTAACTTGTGGGCTTTTGAAGGTTGGCACTGACTTATGGGCTTT-GAAAAAGGGT
64 AAGAGTGCCACTGACTTGTGGGC-TTTGAAGGTTGCCACTGACTTGTGGGCTTTGGAAAAAGGGT
*
3924032 GCCACTGACTTGTGGGC
128 GCCACTGATTTGTGGGC
* * *
3924049 TTTTGAAGGTTGCCACCGACTTGTGGGCTTTGAGAGAAGGGTGCCACTAATTTGTGGGCTTTCAA
1 -TTTGAAGGTTGCCACTGACTTGTGGGCTTTGA-AGAAGGGTGCCACTAACTTGTGGGCTTT-GA
*
3924114 AAAGAGTGCCACTGACTTGTGGGCTTTTGAAGGTTGCCACTGACTTGTGGGCTTTGGGAAAAGGG
63 AAAGAGTGCCACTGACTTGTGGGC-TTTGAAGGTTGCCACTGACTTGTGGGCTTTGGAAAAAGGG
*
3924179 TGCCACTAATTTGTGGGC
127 TGCCACTGATTTGTGGGC
* * * * *
3924197 TTTGAAAAAGAG-TGCCACTGACTTATGGACTTT--TGAAGGTTGCCACTGACTTGTGGGCTTTG
1 TTTG---AAG-GTTGCCACTGACTTGTGGGCTTTGAAGAAGGGTGCCACTAACTTGTGGGCTTT-
* * * * *
3924259 GGAAAAGGGTGCCACTGATTTGTGGGCTTTGAAGATTGCCACTGACTTGTGGGCTTTGGGAGAAG
61 -GAAAAGAGTGCCACTGACTTGTGGGCTTTGAAGGTTGCCACTGACTTGTGGGCTTTGGAAAAAG
3924324 GGTGCCACTGATTTGTGGGC
125 GGTGCCACTGATTTGTGGGC
* * ** *
3924344 TTTGATGGTTGCCACTGACTTGTGGGCTTTGGGAGAAGGGTGCCACGGATTTGTGGGCTTTG--A
1 TTTGAAGGTTGCCACTGACTTGTGGGCTTT-GAAGAAGGGTGCCACTAACTTGTGGGCTTTGAAA
* * *
3924407 AG-GTTGCCACTGACTTGTTGGCTTTGAAAAAGATGCCACTGACTTGTGGGCT
65 AGAG-TGCCACTGACTTGTGGGCTTTG--AAGGTTGCCACTGACTTGTGGGCT
3924459 CTTGAAGGGT
Statistics
Matches: 352, Mismatches: 39, Indels: 35
0.83 0.09 0.08
Matches are distributed among these distances:
142 1 0.00
143 29 0.08
144 47 0.13
145 27 0.08
146 23 0.07
147 156 0.44
148 47 0.13
150 21 0.06
151 1 0.00
ACGTcount: A:0.20, C:0.16, G:0.32, T:0.31
Consensus pattern (144 bp):
TTTGAAGGTTGCCACTGACTTGTGGGCTTTGAAGAAGGGTGCCACTAACTTGTGGGCTTTGAAAA
GAGTGCCACTGACTTGTGGGCTTTGAAGGTTGCCACTGACTTGTGGGCTTTGGAAAAAGGGTGCC
ACTGATTTGTGGGC
Found at i:3925949 original size:14 final size:14
Alignment explanation
Indices: 3925909--3925955 Score: 58
Period size: 14 Copynumber: 3.3 Consensus size: 14
3925899 TCTGTTGTTG
*
3925909 TTGTTTTTTTTTTGT
1 TTGTTTGTTTTTT-T
* *
3925924 TTATTTGGTTTTTT
1 TTGTTTGTTTTTTT
3925938 TTGTTTGTTTTTTT
1 TTGTTTGTTTTTTT
3925952 TTGT
1 TTGT
3925956 GTGGAGGACG
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
14 17 0.63
15 10 0.37
ACGTcount: A:0.02, C:0.00, G:0.15, T:0.83
Consensus pattern (14 bp):
TTGTTTGTTTTTTT
Found at i:3925953 original size:18 final size:18
Alignment explanation
Indices: 3925906--3925953 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 18
3925896 CTTTCTGTTG
*
3925906 TTGTTGTTTTTTTTTTGT
1 TTGTTTTTTTTTTTTTGT
* **
3925924 TTATTTGGTTTTTTTTGT
1 TTGTTTTTTTTTTTTTGT
3925942 TTGTTTTTTTTT
1 TTGTTTTTTTTT
3925954 GTGTGGAGGA
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.02, C:0.00, G:0.15, T:0.83
Consensus pattern (18 bp):
TTGTTTTTTTTTTTTTGT
Found at i:3942570 original size:28 final size:28
Alignment explanation
Indices: 3942518--3942579 Score: 83
Period size: 28 Copynumber: 2.2 Consensus size: 28
3942508 ATCTTCAATG
*
3942518 GAATC-AAAAAAGTGCTAATCCCTAGTT
1 GAATCAAAAAAAGTGCTAATCCCTAGTA
*
3942545 GAATCAAAATAAATTGC-AATCCCTAGTA
1 GAATCAAAA-AAAGTGCTAATCCCTAGTA
3942573 GAATCAA
1 GAATCAA
3942580 GAAACTTGCA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
27 5 0.16
28 20 0.65
29 6 0.19
ACGTcount: A:0.45, C:0.18, G:0.13, T:0.24
Consensus pattern (28 bp):
GAATCAAAAAAAGTGCTAATCCCTAGTA
Found at i:3942931 original size:52 final size:52
Alignment explanation
Indices: 3942856--3942957 Score: 132
Period size: 52 Copynumber: 2.0 Consensus size: 52
3942846 ATCTTTCATT
* * * *
3942856 CCAATGTTGCTAACCTTGGATCAGCATGTTGGCACCTTTATCATCTTTAAGA
1 CCAATGTTGCTAACCTCGAATCAGCACGTTGGCACCTTCATCATCTTTAAGA
* ** *
3942908 CCAATGTTGCTAGCCTCGAATCAGTGCGTTGGTACCTTCATCATCTTTAA
1 CCAATGTTGCTAACCTCGAATCAGCACGTTGGCACCTTCATCATCTTTAA
3942958 ATTCAATTCT
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
52 42 1.00
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.34
Consensus pattern (52 bp):
CCAATGTTGCTAACCTCGAATCAGCACGTTGGCACCTTCATCATCTTTAAGA
Found at i:3943235 original size:31 final size:31
Alignment explanation
Indices: 3943200--3943360 Score: 175
Period size: 31 Copynumber: 5.1 Consensus size: 31
3943190 TCATCCTTTT
3943200 AAGCCCACACAAGTTCGTGGCAACCCTTCTA
1 AAGCCCACACAAGTTCGTGGCAACCCTTCTA
* * *
3943231 AAGCCCATACAAGTTGGTGGCACCCCTTCTA
1 AAGCCCACACAAGTTCGTGGCAACCCTTCTA
*
3943262 AAGCCCACACAAG-TCAGTGGCAACCCCTTTCAA
1 AAGCCCACACAAGTTC-GTGGCAA-CCC-TTCTA
3943295 AAGCCCACACAAG-TCGATGGCAA-CCTTCTCAA
1 AAGCCCACACAAGTTCG-TGGCAACCCTTCT--A
* * *
3943327 AAGCCTACACAAGTTGGTGGCATCTCCTTCTA
1 AAGCCCACACAAGTTCGTGGCAAC-CCTTCTA
3943359 AA
1 AA
3943361 CCTAACATCA
Statistics
Matches: 110, Mismatches: 11, Indels: 17
0.80 0.08 0.12
Matches are distributed among these distances:
30 4 0.04
31 48 0.44
32 25 0.23
33 27 0.25
34 6 0.05
ACGTcount: A:0.30, C:0.33, G:0.17, T:0.20
Consensus pattern (31 bp):
AAGCCCACACAAGTTCGTGGCAACCCTTCTA
Found at i:3943492 original size:52 final size:51
Alignment explanation
Indices: 3943410--3943507 Score: 151
Period size: 52 Copynumber: 1.9 Consensus size: 51
3943400 TTAGACCATC
*
3943410 TCTTTCTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACAATTT
1 TCTTTCTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACAATTT
* * *
3943461 TCTTTCTTAAGTCCAATATCGTTGGCTTTGAATCAGCATATTGGCAC
1 TCTTTC-TAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCAC
3943508 CTTTGTCATC
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
51 6 0.14
52 36 0.86
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.36
Consensus pattern (51 bp):
TCTTTCTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACAATTT
Found at i:3944317 original size:19 final size:20
Alignment explanation
Indices: 3944272--3944323 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
3944262 TTACAAGCCA
*
3944272 ATGTATCGATACATTTTGGG
1 ATGTATCGATACATATTGGG
*
3944292 ATGTATCGATACATATTGTG
1 ATGTATCGATACATATTGGG
3944312 -TGTATCGATACA
1 ATGTATCGATACA
3944324 AATTTGGCTA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 12 0.40
20 18 0.60
ACGTcount: A:0.29, C:0.12, G:0.21, T:0.38
Consensus pattern (20 bp):
ATGTATCGATACATATTGGG
Found at i:3944403 original size:20 final size:21
Alignment explanation
Indices: 3944356--3944410 Score: 76
Period size: 20 Copynumber: 2.7 Consensus size: 21
3944346 CACAATGACC
**
3944356 TGTATCGATACATTCTTTTCA
1 TGTATCGATACATTCTGGTCA
*
3944377 AGTATCGATACATT-TGGTCA
1 TGTATCGATACATTCTGGTCA
3944397 TGTATCGATACATT
1 TGTATCGATACATT
3944411 GTATCGATAC
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
20 17 0.57
21 13 0.43
ACGTcount: A:0.27, C:0.16, G:0.15, T:0.42
Consensus pattern (21 bp):
TGTATCGATACATTCTGGTCA
Found at i:3945074 original size:35 final size:35
Alignment explanation
Indices: 3945035--3945108 Score: 139
Period size: 35 Copynumber: 2.1 Consensus size: 35
3945025 GCACATTAAC
*
3945035 AAATGATACCAATTTCTTTCTCCCCCTTAATCATA
1 AAATGATACCAATTTCTTTCTCCCCCTGAATCATA
3945070 AAATGATACCAATTTCTTTCTCCCCCTGAATCATA
1 AAATGATACCAATTTCTTTCTCCCCCTGAATCATA
3945105 AAAT
1 AAAT
3945109 TTATTTGCAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.34, C:0.27, G:0.04, T:0.35
Consensus pattern (35 bp):
AAATGATACCAATTTCTTTCTCCCCCTGAATCATA
Found at i:3947123 original size:7 final size:7
Alignment explanation
Indices: 3947113--3947137 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
3947103 AATCATCAAA
3947113 ATCATTC
1 ATCATTC
3947120 ATCATTC
1 ATCATTC
3947127 ATCATTC
1 ATCATTC
3947134 ATCA
1 ATCA
3947138 CAAAATCACA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.32, C:0.28, G:0.00, T:0.40
Consensus pattern (7 bp):
ATCATTC
Found at i:3947147 original size:8 final size:8
Alignment explanation
Indices: 3947134--3947159 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
3947124 TTCATCATTC
3947134 ATCACAAA
1 ATCACAAA
3947142 ATCACAAA
1 ATCACAAA
3947150 ATCACAAA
1 ATCACAAA
3947158 AT
1 AT
3947160 TTAATCAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.62, C:0.23, G:0.00, T:0.15
Consensus pattern (8 bp):
ATCACAAA
Found at i:3953101 original size:33 final size:32
Alignment explanation
Indices: 3953059--3953126 Score: 100
Period size: 33 Copynumber: 2.1 Consensus size: 32
3953049 CGTTACAAGC
*
3953059 CAATGTATCGATACATTTTGGGATGTATCGAGA
1 CAATGTATCGATACATATTGGG-TGTATCGAGA
* *
3953092 CAATGTATCGATACATATTGTGTGTATCGATA
1 CAATGTATCGATACATATTGGGTGTATCGAGA
3953124 CAA
1 CAA
3953127 ATTTGGCTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
32 12 0.38
33 20 0.62
ACGTcount: A:0.32, C:0.13, G:0.21, T:0.34
Consensus pattern (32 bp):
CAATGTATCGATACATATTGGGTGTATCGAGA
Found at i:3953205 original size:20 final size:21
Alignment explanation
Indices: 3953158--3953209 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 21
3953148 GCCAATGACC
**
3953158 TGTATCGATACATTTTTTTCA
1 TGTATCGATACATTTTGGTCA
*
3953179 AGTATCGATACA-TTTGGTCA
1 TGTATCGATACATTTTGGTCA
3953199 TGTATCGATAC
1 TGTATCGATAC
3953210 TGTGCAATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
20 16 0.59
21 11 0.41
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.42
Consensus pattern (21 bp):
TGTATCGATACATTTTGGTCA
Found at i:3953603 original size:52 final size:52
Alignment explanation
Indices: 3953525--3953663 Score: 206
Period size: 52 Copynumber: 2.7 Consensus size: 52
3953515 CTAACATTTG
*
3953525 ATATCACTAGCCTTGAATCAGCATATTGGTACCTTTGTCATCTTTAAGTCCA
1 ATATCACTAGCCTTGAATCAGCATATTGGCACCTTTGTCATCTTTAAGTCCA
* * *
3953577 ATATCGCTAGCCTTGAATCAGCATATTGGCACCTTTGTGATCTTTAAGTCTA
1 ATATCACTAGCCTTGAATCAGCATATTGGCACCTTTGTCATCTTTAAGTCCA
* * * *
3953629 ATATTACTAACCTTGATTCAGCACATTGGCACCTT
1 ATATCACTAGCCTTGAATCAGCATATTGGCACCTT
3953664 AATATCACTA
Statistics
Matches: 78, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
52 78 1.00
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (52 bp):
ATATCACTAGCCTTGAATCAGCATATTGGCACCTTTGTCATCTTTAAGTCCA
Found at i:3953679 original size:36 final size:36
Alignment explanation
Indices: 3953627--3953699 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 36
3953617 TCTTTAAGTC
* *
3953627 TAATATTACTAACCTTGATTCAGCACATTGGCACCT
1 TAATATCACTAACCTTGAATCAGCACATTGGCACCT
* *
3953663 TAATATCACTAGCCTTGAATCAGTACATTGGCACCT
1 TAATATCACTAACCTTGAATCAGCACATTGGCACCT
3953699 T
1 T
3953700 TGTCATCTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (36 bp):
TAATATCACTAACCTTGAATCAGCACATTGGCACCT
Found at i:3953731 original size:88 final size:88
Alignment explanation
Indices: 3953576--3953751 Score: 244
Period size: 88 Copynumber: 2.0 Consensus size: 88
3953566 CTTTAAGTCC
* * * * *
3953576 AATATCGCTAGCCTTGAATCAGCATATTGGCACCTTTGTGATCTTTAAGTCTAATATTACTAACC
1 AATATCACTAGCCTTGAATCAGCACATTGGCACCTTTGTCATCTTTAAGCCTAATATCACTAACC
*
3953641 TTGATTCAGCACATTGGCACCTT
66 TTGAATCAGCACATTGGCACCTT
* ** **
3953664 AATATCACTAGCCTTGAATCAGTACATTGGCACCTTTGTCATCTTTAAGCCTAATATCGTTGGCC
1 AATATCACTAGCCTTGAATCAGCACATTGGCACCTTTGTCATCTTTAAGCCTAATATCACTAACC
*
3953729 TTGAATCAGCATATTGGCACCTT
66 TTGAATCAGCACATTGGCACCTT
3953752 TATCATTTTT
Statistics
Matches: 76, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
88 76 1.00
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.35
Consensus pattern (88 bp):
AATATCACTAGCCTTGAATCAGCACATTGGCACCTTTGTCATCTTTAAGCCTAATATCACTAACC
TTGAATCAGCACATTGGCACCTT
Found at i:3953856 original size:61 final size:61
Alignment explanation
Indices: 3953703--3953871 Score: 155
Period size: 61 Copynumber: 2.8 Consensus size: 61
3953693 GCACCTTTGT
* * * * * *
3953703 CATCTTTAAGC-CTAATATCGTTGGCCTTGAATCAGCATATTGGCACCTTTATCATTTTTCT
1 CATCTTCAAGCTC-AATATCGCTCGCCTTGAATCAGCATATTAGCACCTTTATCATTCTTCA
* * * *
3953764 TATCTTCAAGCTCGATATCGCTCGCCATGAATCAGCATATTAGCATCTTTATCATTCTTCA
1 CATCTTCAAGCTCAATATCGCTCGCCTTGAATCAGCATATTAGCACCTTTATCATTCTTCA
* * * * *
3953825 CATCTTTAAG-TCCAATGTTGCT-GACCTTGAATCATCATATTGGCACC
1 CATCTTCAAGCT-CAATATCGCTCG-CCTTGAATCAGCATATTAGCACC
3953872 CTTCTCATCC
Statistics
Matches: 86, Mismatches: 19, Indels: 6
0.77 0.17 0.05
Matches are distributed among these distances:
60 2 0.02
61 83 0.97
62 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.13, T:0.37
Consensus pattern (61 bp):
CATCTTCAAGCTCAATATCGCTCGCCTTGAATCAGCATATTAGCACCTTTATCATTCTTCA
Found at i:3960892 original size:52 final size:52
Alignment explanation
Indices: 3960809--3960937 Score: 204
Period size: 52 Copynumber: 2.5 Consensus size: 52
3960799 CGAAATATGA
*
3960809 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATGTCATAGTGTATCGATACATCTGGGC
*
3960861 AAATTTGCCTGTATGTATCGATACATGTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATGTCATAGTGTATCGATACATCTGGGC
** * *
3960913 AAATTTGTTTACATGTATCAATACA
1 AAATTTGCCTGCATGTATCGATACA
3960938 AAGATCAGTG
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 70 1.00
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATGTCATAGTGTATCGATACATCTGGGC
Found at i:3960948 original size:52 final size:51
Alignment explanation
Indices: 3960809--3960956 Score: 163
Period size: 52 Copynumber: 2.8 Consensus size: 51
3960799 CGAAATATGA
* * **
3960809 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTACATGTATCAATACAAGTCA-AGTGTATCGATACATCTGGGC
** * *
3960861 AAATTTGCCTGTATGTATCGATACATGTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTACATGTATCAATACAAGTCA-AGTGTATCGATACATCTGGGC
**
3960913 AAATTTGTTTACATGTATCAATACAAAGATC-AGTGTATCGATAC
1 AAATTTGCCTACATGTATCAATAC-AAG-TCAAGTGTATCGATAC
3960957 TATGTATCGA
Statistics
Matches: 86, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
52 82 0.95
53 2 0.02
54 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.34
Consensus pattern (51 bp):
AAATTTGCCTACATGTATCAATACAAGTCAAGTGTATCGATACATCTGGGC
Found at i:3961047 original size:19 final size:19
Alignment explanation
Indices: 3961023--3961087 Score: 70
Period size: 19 Copynumber: 3.7 Consensus size: 19
3961013 AGCGATACAT
3961023 TGTATCGATACAAAACTTA
1 TGTATCGATACAAAACTTA
3961042 TGTATCGATAC---A--T-
1 TGTATCGATACAAAACTTA
* *
3961055 TGTATTGATACAACACTTA
1 TGTATCGATACAAAACTTA
3961074 TGTATCGATACAAA
1 TGTATCGATACAAA
3961088 TCATTGAAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 12
0.71 0.06 0.23
Matches are distributed among these distances:
13 10 0.27
14 1 0.03
16 2 0.05
18 1 0.03
19 23 0.62
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.34
Consensus pattern (19 bp):
TGTATCGATACAAAACTTA
Found at i:3961056 original size:32 final size:32
Alignment explanation
Indices: 3961015--3961085 Score: 124
Period size: 32 Copynumber: 2.2 Consensus size: 32
3961005 AGCTTCGTAG
3961015 CGATACATTGTATCGATACAAAACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
* *
3961047 CGATACATTGTATTGATACAACACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
3961079 CGATACA
1 CGATACA
3961086 AATCATTGAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.34
Consensus pattern (32 bp):
CGATACATTGTATCGATACAAAACTTATGTAT
Found at i:3961094 original size:32 final size:32
Alignment explanation
Indices: 3961015--3961094 Score: 90
Period size: 32 Copynumber: 2.5 Consensus size: 32
3961005 AGCTTCGTAG
* * *
3961015 CGATACATTGTATCGATACAAAACTTATGTAT
1 CGATACAATGCATTGATACAAAACTTATGTAT
* * *
3961047 CGATACATTGTATTGATACAACACTTATGTAT
1 CGATACAATGCATTGATACAAAACTTATGTAT
3961079 CGATACAAAT-CATTGA
1 CGATAC-AATGCATTGA
3961095 AATTCAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
32 41 0.95
33 2 0.05
ACGTcount: A:0.38, C:0.16, G:0.12, T:0.34
Consensus pattern (32 bp):
CGATACAATGCATTGATACAAAACTTATGTAT
Found at i:3962233 original size:89 final size:88
Alignment explanation
Indices: 3962140--3962344 Score: 223
Period size: 89 Copynumber: 2.3 Consensus size: 88
3962130 CTAGTAAAAT
* ** * *
3962140 GGCAAAAGCATATGAGATGATGCAAATACTAAACGTTATCTAAAATGCAGATTTATGTGAAATAA
1 GGCAAAAGCATATGAAATGATGCAAATAC-AAACGTTATCTAAAATGCAGATGCAAGTGAAACAA
3962205 TGCAAATGCAAACATCAATA-GAA
65 TGCAAATGCAAACATCAATAGGAA
* * * * * * * *
3962228 GGGCAAATGTATATAAAAATAATGCAAATACCAATGTTATCTAAAATGTAGATGCAAGTGAAACG
1 -GGCAAAAGCATAT-GAAATGATGCAAATACAAACGTTATCTAAAATGCAGATGCAAGTGAAACA
* *
3962293 ATGCAAATGCAAGCGTCAATAGGAA
64 ATGCAAATGCAAACATCAATAGGAA
* *
3962318 GACAAAAGCATATGAAAAGATGCAAAT
1 GGCAAAAGCATATGAAATGATGCAAAT
3962345 GCTGATGCAG
Statistics
Matches: 93, Mismatches: 21, Indels: 5
0.78 0.18 0.04
Matches are distributed among these distances:
88 11 0.12
89 66 0.71
90 16 0.17
ACGTcount: A:0.47, C:0.12, G:0.19, T:0.22
Consensus pattern (88 bp):
GGCAAAAGCATATGAAATGATGCAAATACAAACGTTATCTAAAATGCAGATGCAAGTGAAACAAT
GCAAATGCAAACATCAATAGGAA
Found at i:3963184 original size:15 final size:16
Alignment explanation
Indices: 3963164--3963195 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
3963154 AGGGCCTCAT
3963164 TATTTC-CTTTTTTTC
1 TATTTCTCTTTTTTTC
3963179 TATTTCTCTTTTTTTC
1 TATTTCTCTTTTTTTC
3963195 T
1 T
3963196 TCTTTTTCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.06, C:0.19, G:0.00, T:0.75
Consensus pattern (16 bp):
TATTTCTCTTTTTTTC
Found at i:3963198 original size:19 final size:18
Alignment explanation
Indices: 3963171--3963220 Score: 59
Period size: 17 Copynumber: 2.8 Consensus size: 18
3963161 CATTATTTCC
*
3963171 TTTTT-TTCTATTTCTCTT
1 TTTTTCTTCT-TTTCTCAT
3963189 TTTTTCTTCTTTT-TCAT
1 TTTTTCTTCTTTTCTCAT
3963206 TTTTTCTTCTCTTTC
1 TTTTTCTTCT-TTTC
3963221 ACAACCTTTC
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
17 13 0.46
18 11 0.39
19 4 0.14
ACGTcount: A:0.04, C:0.20, G:0.00, T:0.76
Consensus pattern (18 bp):
TTTTTCTTCTTTTCTCAT
Found at i:3963512 original size:12 final size:12
Alignment explanation
Indices: 3963497--3963540 Score: 52
Period size: 12 Copynumber: 3.5 Consensus size: 12
3963487 TTCATTTAAG
3963497 TTTTTTTTTCTT
1 TTTTTTTTTCTT
*
3963509 TTTTTGTTTATGTT
1 TTTTT-TTT-TCTT
*
3963523 TTTTTTTTGCTT
1 TTTTTTTTTCTT
3963535 TTTTTT
1 TTTTTT
3963541 GTTGTTTGTT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
12 13 0.48
13 6 0.22
14 8 0.30
ACGTcount: A:0.02, C:0.05, G:0.07, T:0.86
Consensus pattern (12 bp):
TTTTTTTTTCTT
Found at i:3963512 original size:25 final size:26
Alignment explanation
Indices: 3963484--3963539 Score: 71
Period size: 24 Copynumber: 2.2 Consensus size: 26
3963474 TTGCACTTTC
*
3963484 TTTTTCATTTAAG-TTTTTTTTT-CT
1 TTTTTTATTTAAGTTTTTTTTTTGCT
* *
3963508 TTTTTTGTTTATGTTTTTTTTTTGCT
1 TTTTTTATTTAAGTTTTTTTTTTGCT
3963534 TTTTTT
1 TTTTTT
3963540 TGTTGTTTGT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
24 10 0.37
25 9 0.33
26 8 0.30
ACGTcount: A:0.07, C:0.05, G:0.07, T:0.80
Consensus pattern (26 bp):
TTTTTTATTTAAGTTTTTTTTTTGCT
Found at i:3963518 original size:24 final size:26
Alignment explanation
Indices: 3963491--3963539 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
3963481 TTCTTTTTCA
3963491 TTTAAG-TTTTTTTTT-CTTTTTTTG
1 TTTAAGTTTTTTTTTTGCTTTTTTTG
*
3963515 TTTATGTTTTTTTTTTGCTTTTTTT
1 TTTAAGTTTTTTTTTTGCTTTTTTT
3963540 TGTTGTTTGT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 5 0.23
25 9 0.41
26 8 0.36
ACGTcount: A:0.06, C:0.04, G:0.08, T:0.82
Consensus pattern (26 bp):
TTTAAGTTTTTTTTTTGCTTTTTTTG
Found at i:3963546 original size:24 final size:25
Alignment explanation
Indices: 3963497--3963547 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
3963487 TTCATTTAAG
*
3963497 TTTTTTTTTCTTTTTTTGTTTATGT
1 TTTTTTTTTCTTTTTTTGTGTATGT
3963522 TTTTTTTTTGCTTTTTTT-TGT-TGT
1 TTTTTTTTT-CTTTTTTTGTGTATGT
3963546 TT
1 TT
3963548 GTTATTTAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 5 0.21
25 11 0.46
26 8 0.33
ACGTcount: A:0.02, C:0.04, G:0.10, T:0.84
Consensus pattern (25 bp):
TTTTTTTTTCTTTTTTTGTGTATGT
Found at i:3965169 original size:34 final size:35
Alignment explanation
Indices: 3965131--3965197 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
3965121 CCCTACAACA
3965131 CTATC-TTTC-AAGGCTAAGATAGAAACCTCTCTCT
1 CTATCTTTTCAAAGGCTAAGATAG-AACCTCTCTCT
3965165 CTATCTTTTTCAAAGGCTAAGATAGAACCTCTC
1 CTATC-TTTTCAAAGGCTAAGATAGAACCTCTC
3965198 AATCACTTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 5 0.17
36 12 0.40
37 13 0.43
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (35 bp):
CTATCTTTTCAAAGGCTAAGATAGAACCTCTCTCT
Found at i:3965670 original size:20 final size:20
Alignment explanation
Indices: 3965645--3965687 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
3965635 GTGTGAACAG
3965645 TGATGTATCGATACTATTTA
1 TGATGTATCGATACTATTTA
3965665 TGATGTATCGATACTATTTA
1 TGATGTATCGATACTATTTA
3965685 TGA
1 TGA
3965688 ATAGTGATAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.09, G:0.16, T:0.44
Consensus pattern (20 bp):
TGATGTATCGATACTATTTA
Found at i:3965776 original size:22 final size:22
Alignment explanation
Indices: 3965723--3965776 Score: 101
Period size: 21 Copynumber: 2.5 Consensus size: 22
3965713 AGTGACCTAG
3965723 GAACAGTGATGTATCGATACAT
1 GAACAGTGATGTATCGATACAT
3965745 GAA-AGTGATGTATCGATACAT
1 GAACAGTGATGTATCGATACAT
3965766 GAACAGTGATG
1 GAACAGTGATG
3965777 AATAGTGATG
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 21 0.68
22 10 0.32
ACGTcount: A:0.37, C:0.11, G:0.26, T:0.26
Consensus pattern (22 bp):
GAACAGTGATGTATCGATACAT
Found at i:3965783 original size:10 final size:10
Alignment explanation
Indices: 3965764--3965794 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
3965754 GTATCGATAC
3965764 ATGAACAGTG
1 ATGAACAGTG
*
3965774 ATGAATAGTG
1 ATGAACAGTG
3965784 ATGAACAGTG
1 ATGAACAGTG
3965794 A
1 A
3965795 AAATGAGATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.42, C:0.06, G:0.29, T:0.23
Consensus pattern (10 bp):
ATGAACAGTG
Found at i:3965882 original size:53 final size:53
Alignment explanation
Indices: 3965818--3965954 Score: 229
Period size: 53 Copynumber: 2.6 Consensus size: 53
3965808 CTACTACCAA
*
3965818 TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAGTGACC
1 TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
* * *
3965871 TGTATCGATACATATTGTGTGTATCGATACAAATTTGGCTACTGTCAATGTCC
1 TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
3965924 TGTATCGATACATATTTGTGTGTATCGATAC
1 TGTATCGATACATATTT-TGTGTATCGATAC
3965955 TATGCAATCT
Statistics
Matches: 78, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
53 65 0.83
54 13 0.17
ACGTcount: A:0.26, C:0.17, G:0.19, T:0.38
Consensus pattern (53 bp):
TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
Found at i:3965990 original size:21 final size:20
Alignment explanation
Indices: 3965942--3965996 Score: 65
Period size: 21 Copynumber: 2.7 Consensus size: 20
3965932 TACATATTTG
**
3965942 TGTGTATCGATACTATGCAA
1 TGTGTATCGATACTATAAAA
* *
3965962 TCTGTATCGATACATTTAAAA
1 TGTGTATCGATAC-TATAAAA
3965983 TGTGTATCGATACT
1 TGTGTATCGATACT
3965997 TTTCAGGGTT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
20 13 0.45
21 16 0.55
ACGTcount: A:0.31, C:0.15, G:0.16, T:0.38
Consensus pattern (20 bp):
TGTGTATCGATACTATAAAA
Found at i:3966061 original size:21 final size:21
Alignment explanation
Indices: 3966035--3966075 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
3966025 GTCAACGTTG
3966035 TGTATTAATACCAATA-GTATA
1 TGTATTAATA-CAATACGTATA
*
3966056 TGTATTGATACAATACGTAT
1 TGTATTAATACAATACGTAT
3966076 TTTTACTTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.39
Consensus pattern (21 bp):
TGTATTAATACAATACGTATA
Found at i:3967041 original size:13 final size:13
Alignment explanation
Indices: 3967023--3967079 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
3967013 TTCAACGATT
3967023 TGTATCGATACAA
1 TGTATCGATACAA
3967036 TGTATCGATACATGA
1 TGTATCGATACA--A
3967051 GTGTTGTATCGATACAA
1 ----TGTATCGATACAA
3967068 TGTATCGATACA
1 TGTATCGATACA
3967080 TAAGTTGTAT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 24 0.63
15 1 0.03
17 1 0.03
19 12 0.32
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3967063 original size:32 final size:30
Alignment explanation
Indices: 3967022--3967104 Score: 121
Period size: 32 Copynumber: 2.7 Consensus size: 30
3967012 TTTCAACGAT
*
3967022 TTGTATCGATACAATGTATCGATACATGAGTG
1 TTGTATCGATACAATGTATCGATACAT-A-AG
3967054 TTGTATCGATACAATGTATCGATACATAAG
1 TTGTATCGATACAATGTATCGATACATAAG
* *
3967084 TTGTATTGATATAATGTATCG
1 TTGTATCGATACAATGTATCG
3967105 CCACAAAGCT
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
30 20 0.42
31 1 0.02
32 27 0.56
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (30 bp):
TTGTATCGATACAATGTATCGATACATAAG
Found at i:3967240 original size:52 final size:52
Alignment explanation
Indices: 3967182--3967310 Score: 204
Period size: 52 Copynumber: 2.5 Consensus size: 52
3967172 CACTGATCTT
* *
3967182 TGTATCGATACATGCAAGCAAATTTGCCCAGATGTATCGATATACTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
* * *
3967234 TGTATCGATACATACAGGCAAATTTGCCCATATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
3967286 TGTATCGATATATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
3967311 TCATATTTCG
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 70 1.00
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.30
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:3972805 original size:18 final size:18
Alignment explanation
Indices: 3972782--3972818 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
3972772 ATATGAATAC
3972782 ATTCTAAGGACTACTTAG
1 ATTCTAAGGACTACTTAG
3972800 ATTCTAAGGACTACTTAG
1 ATTCTAAGGACTACTTAG
3972818 A
1 A
3972819 AGCATTCGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.32
Consensus pattern (18 bp):
ATTCTAAGGACTACTTAG
Found at i:3973699 original size:28 final size:28
Alignment explanation
Indices: 3973661--3973718 Score: 98
Period size: 28 Copynumber: 2.1 Consensus size: 28
3973651 CTACAGTGGT
*
3973661 TGCTGCTGTTGGAGTTGATCATGGCTGC
1 TGCTGCGGTTGGAGTTGATCATGGCTGC
*
3973689 TGCTGCGGTTGGAGTTGATCATGGTTGC
1 TGCTGCGGTTGGAGTTGATCATGGCTGC
3973717 TG
1 TG
3973719 GTGTAGGTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.10, C:0.16, G:0.38, T:0.36
Consensus pattern (28 bp):
TGCTGCGGTTGGAGTTGATCATGGCTGC
Found at i:3973801 original size:17 final size:17
Alignment explanation
Indices: 3973779--3973828 Score: 73
Period size: 17 Copynumber: 2.9 Consensus size: 17
3973769 GTTGTTACTG
3973779 TTGCTGTTGTCTTCTTC
1 TTGCTGTTGTCTTCTTC
*
3973796 TTGCTGCTGTCTTCTTC
1 TTGCTGTTGTCTTCTTC
* *
3973813 TTGATGTCGTCTTCTT
1 TTGCTGTTGTCTTCTT
3973829 TTACCATCAA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 29 1.00
ACGTcount: A:0.02, C:0.24, G:0.18, T:0.56
Consensus pattern (17 bp):
TTGCTGTTGTCTTCTTC
Found at i:3973950 original size:21 final size:21
Alignment explanation
Indices: 3973890--3973952 Score: 81
Period size: 21 Copynumber: 3.0 Consensus size: 21
3973880 TTGCTGTTTC
* *
3973890 ATTGCTTTACTATTTCGTTTCT
1 ATTGC-TTGCTATTTCGTCTCT
3973912 ATTGCTTGCTATTTCGTCTCT
1 ATTGCTTGCTATTTCGTCTCT
* *
3973933 GTTGCTTGCTGTTTCGTCTC
1 ATTGCTTGCTATTTCGTCTC
3973953 ACTGTTTCTT
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 32 0.86
22 5 0.14
ACGTcount: A:0.08, C:0.22, G:0.16, T:0.54
Consensus pattern (21 bp):
ATTGCTTGCTATTTCGTCTCT
Found at i:3974314 original size:21 final size:22
Alignment explanation
Indices: 3974285--3974340 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 22
3974275 GTCGTGGTTC
*
3974285 CTTTCTCTTTTGTCCCTTTT-TT
1 CTTT-TCTTTTCTCCCTTTTCTT
3974307 CTTTTC-TTTCTCCCTTTTCTT
1 CTTTTCTTTTCTCCCTTTTCTT
*
3974328 TTTTTCTTCTTCT
1 CTTTTCTT-TTCT
3974341 TGTCGTGCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
20 11 0.38
21 9 0.31
22 5 0.17
23 4 0.14
ACGTcount: A:0.00, C:0.29, G:0.02, T:0.70
Consensus pattern (22 bp):
CTTTTCTTTTCTCCCTTTTCTT
Found at i:3974322 original size:20 final size:21
Alignment explanation
Indices: 3974297--3974335 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
3974287 TTCTCTTTTG
3974297 TCCCTTTT-TTCTTTTCTTTC
1 TCCCTTTTCTTCTTTTCTTTC
*
3974317 TCCCTTTTCTTTTTTTCTT
1 TCCCTTTTCTTCTTTTCTT
3974336 CTTCTTGTCG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (21 bp):
TCCCTTTTCTTCTTTTCTTTC
Found at i:3974524 original size:22 final size:22
Alignment explanation
Indices: 3974493--3974543 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
3974483 TCTTTGCTGT
*
3974493 TTGCTT-CTTCAGCTGTTGCCA
1 TTGCTTGCTTCAGCTGCTGCCA
*
3974514 TTGCTTGCTTCAGCTGCTGCCT
1 TTGCTTGCTTCAGCTGCTGCCA
3974536 TTG-TTGCT
1 TTGCTTGCT
3974544 GCCTTTGCTG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
21 11 0.41
22 16 0.59
ACGTcount: A:0.06, C:0.27, G:0.22, T:0.45
Consensus pattern (22 bp):
TTGCTTGCTTCAGCTGCTGCCA
Found at i:3974879 original size:14 final size:14
Alignment explanation
Indices: 3974838--3974896 Score: 63
Period size: 14 Copynumber: 4.4 Consensus size: 14
3974828 TAATTTATAT
* *
3974838 AATTATATTGTAAA
1 AATTAAATTATAAA
3974852 AATT-AA-TA-AAA
1 AATTAAATTATAAA
3974863 AATTAAATTATAAA
1 AATTAAATTATAAA
3974877 AATTAAAATT-TAAA
1 AATT-AAATTATAAA
3974891 AATTAA
1 AATTAA
3974897 GATAAAATTT
Statistics
Matches: 39, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
11 7 0.18
12 3 0.08
13 5 0.13
14 19 0.49
15 5 0.13
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.36
Consensus pattern (14 bp):
AATTAAATTATAAA
Found at i:3975597 original size:166 final size:167
Alignment explanation
Indices: 3975118--3975641 Score: 569
Period size: 167 Copynumber: 3.1 Consensus size: 167
3975108 TAAACCAAAG
* * * * * * * *
3975118 AAAATCCTCCCGAAAATATTTATGGAA-TAGAAAACTCGATTTTTC-GAGAAAAGAATAATTTCA
1 AAAATCCTCTCAAAAAAATTTA-CGAAGTAGAAAACTCCATATTTCAGA-AAAAGGAGAATTTCA
* * * * * **
3975181 A-TAAAAAAATCTAAAACTTATGAAAATAAATTAATTTTTCAAAATTTG-TTTAAATTTGAATTA
64 AGGAAAAAATTCAAAAACTTATGAAAATGAATAAATTTTT-AAAAACTGATTT-AATTTGAATTA
* *
3975244 AATAATAATATTTGATAAATTTTAAAATTTAAAAACTAAGA
127 AATAATAATATTTGATGAATTTTAAAAATTAAAAACTAAGA
* * * * * *
3975285 AAAATCCTCTTAAAAAAATTTAAGGAGTATAAAACTCCATATTTCAGAAACAGGAGAATTTTAAG
1 AAAATCCTCTCAAAAAAATTTACGAAGTAGAAAACTCCATATTTCAGAAAAAGGAGAATTTCAAG
* * * *
3975350 GAAAAAATTCAAAAACTCATGAAGATGAATAAATTTTTAAAAACTTATTTAATTTGAGTTAAATA
66 GAAAAAATTCAAAAACTTATGAAAATGAATAAATTTTTAAAAACTGATTTAATTTGAATTAAATA
*
3975415 ATAATATTTGATGAATTTTAAAAATTAAAAA-TCGAGA
131 ATAATATTTGATGAATTTTAAAAATTAAAAACT-AAGA
** *
3975452 AAAATCCTCTCAAAAAAATTTACGAAGTAGAAAACAT-TGTATTTC-GAAAAAGGGGAATTTCAA
1 AAAATCCTCTCAAAAAAATTTACGAAGTAGAAAAC-TCCATATTTCAGAAAAAGGAGAATTTCAA
* * * * *
3975515 GGAAAAAATTCAAACATTTATGAAAATGAATGAATTTTTTAAAACTGATTTAATATGAATTAAAT
65 GGAAAAAATTCAAAAACTTATGAAAATGAATAAATTTTTAAAAACTGATTTAATTTGAATTAAAT
* *
3975580 AAAAATATTTTATGAATTATTAAAAATTAAAAACTAAGA
130 AATAATATTTGATGAATT-TTAAAAATTAAAAACTAAGA
*
3975619 AAAATCCTAC-CGAAAAAATTTAC
1 AAAATCCT-CTCAAAAAAATTTAC
3975642 AGAGAATAAA
Statistics
Matches: 299, Mismatches: 49, Indels: 18
0.82 0.13 0.05
Matches are distributed among these distances:
166 90 0.30
167 170 0.57
168 39 0.13
ACGTcount: A:0.50, C:0.08, G:0.10, T:0.32
Consensus pattern (167 bp):
AAAATCCTCTCAAAAAAATTTACGAAGTAGAAAACTCCATATTTCAGAAAAAGGAGAATTTCAAG
GAAAAAATTCAAAAACTTATGAAAATGAATAAATTTTTAAAAACTGATTTAATTTGAATTAAATA
ATAATATTTGATGAATTTTAAAAATTAAAAACTAAGA
Found at i:3978396 original size:21 final size:21
Alignment explanation
Indices: 3978340--3978396 Score: 55
Period size: 21 Copynumber: 2.7 Consensus size: 21
3978330 TATTATATTG
*
3978340 AAAATATTATTT-TATTAATTTT
1 AAAATATT-TTTATA-TAATTTA
* *
3978362 AAAA-ATTTTAATATGATTTA
1 AAAATATTTTTATATAATTTA
3978382 AAAATATTTTTATAT
1 AAAATATTTTTATAT
3978397 TTTATGTTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
20 11 0.38
21 14 0.48
22 4 0.14
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.53
Consensus pattern (21 bp):
AAAATATTTTTATATAATTTA
Found at i:3982121 original size:20 final size:19
Alignment explanation
Indices: 3982096--3982265 Score: 120
Period size: 20 Copynumber: 8.9 Consensus size: 19
3982086 GGTAAAAAGA
3982096 CATAATGTATCGATACATT
1 CATAATGTATCGATACATT
*
3982115 GCATAATATATCGATACATT
1 -CATAATGTATCGATACATT
*
3982135 CATACATGTATCGATATATT
1 CATA-ATGTATCGATACATT
*
3982155 CAAAAATGTATCGATACA-T
1 C-ATAATGTATCGATACATT
** * *
3982174 C--AGGGTA---A-AAATGA
1 CATAATGTATCGATACAT-T
3982188 CATAATGTATCGATACATT
1 CATAATGTATCGATACATT
* *
3982207 GCAAAATATATCGATACATT
1 -CATAATGTATCGATACATT
*
3982227 CATACATGTATCGATATATT
1 CATA-ATGTATCGATACATT
* *
3982247 GAAAAATGTATCGATACAT
1 -CATAATGTATCGATACAT
3982266 CAGGGTAAAA
Statistics
Matches: 116, Mismatches: 21, Indels: 26
0.71 0.13 0.16
Matches are distributed among these distances:
12 2 0.02
13 1 0.01
14 1 0.01
16 8 0.07
19 10 0.09
20 90 0.78
21 4 0.03
ACGTcount: A:0.41, C:0.14, G:0.12, T:0.32
Consensus pattern (19 bp):
CATAATGTATCGATACATT
Found at i:3982167 original size:40 final size:40
Alignment explanation
Indices: 3982096--3982265 Score: 146
Period size: 40 Copynumber: 4.0 Consensus size: 40
3982086 GGTAAAAAGA
*
3982096 CATA-ATGTATCGATACATTGCATAATATATCGATACATT
1 CATACATGTATCGATACATTGCAAAATATATCGATACATT
* *
3982135 CATACATGTATCGATATATT-CAAAAATGTATCGATACATCAGGGT
1 CATACATGTATCGATACATTGC-AAAATATATCGATACAT-----T
*
3982180 AAAAATGACATAATGTATCGATACATTGCAAAATATATCGATACATT
1 ---CAT-AC---ATGTATCGATACATTGCAAAATATATCGATACATT
* * *
3982227 CATACATGTATCGATATATTGAAAAATGTATCGATACAT
1 CATACATGTATCGATACATTGCAAAATATATCGATACAT
3982266 CAGGGTAAAA
Statistics
Matches: 106, Mismatches: 10, Indels: 29
0.73 0.07 0.20
Matches are distributed among these distances:
39 5 0.05
40 60 0.57
43 2 0.02
44 2 0.02
45 1 0.01
47 1 0.01
48 2 0.02
49 2 0.02
52 30 0.28
53 1 0.01
ACGTcount: A:0.41, C:0.14, G:0.12, T:0.32
Consensus pattern (40 bp):
CATACATGTATCGATACATTGCAAAATATATCGATACATT
Found at i:3982221 original size:92 final size:92
Alignment explanation
Indices: 3982068--3982278 Score: 381
Period size: 92 Copynumber: 2.3 Consensus size: 92
3982058 TACATTATTC
*
3982068 AATGTATCGATACATCTA-GGTAAAAA-GACATAATGTATCGATACATTGCATAATATATCGATA
1 AATGTATCGATACATC-AGGGTAAAAATGACATAATGTATCGATACATTGCAAAATATATCGATA
3982131 CATTCATACATGTATCGATATATTCAAA
65 CATTCATACATGTATCGATATATTCAAA
3982159 AATGTATCGATACATCAGGGTAAAAATGACATAATGTATCGATACATTGCAAAATATATCGATAC
1 AATGTATCGATACATCAGGGTAAAAATGACATAATGTATCGATACATTGCAAAATATATCGATAC
*
3982224 ATTCATACATGTATCGATATATTGAAA
66 ATTCATACATGTATCGATATATTCAAA
3982251 AATGTATCGATACATCAGGGTAAAAATG
1 AATGTATCGATACATCAGGGTAAAAATG
3982279 TGACTTTTCC
Statistics
Matches: 116, Mismatches: 2, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
90 1 0.01
91 24 0.21
92 91 0.78
ACGTcount: A:0.42, C:0.13, G:0.14, T:0.30
Consensus pattern (92 bp):
AATGTATCGATACATCAGGGTAAAAATGACATAATGTATCGATACATTGCAAAATATATCGATAC
ATTCATACATGTATCGATATATTCAAA
Found at i:3983473 original size:29 final size:29
Alignment explanation
Indices: 3982828--3984029 Score: 1461
Period size: 28 Copynumber: 41.9 Consensus size: 29
3982818 AAAAAAAAAT
* *
3982828 GTGCCACTAACTTGTGTAGGCTTTGAAAAAA
1 GTGCCACTGACTTGTG--GGCTTTGAAAAGA
* *
3982859 GTTGCCACTAACACGTGTGGGCTTTGAAAAGA
1 G-TGCCACT--GACTTGTGGGCTTTGAAAAGA
** * *
3982891 GTGTTACTAACTTGCGTGGGCTTT-AAAAGG
1 GTGCCACTGACTT--GTGGGCTTTGAAAAGA
3982921 GTGCCACTGACTTACGTGGGCTTTG-AAAGA
1 GTGCCACTGACTT--GTGGGCTTTGAAAAGA
* * * *
3982951 ATGCCACTGACTCGTGGGTTTTGAAAGGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
3982980 -TGCCACTGACTTGTGGGCTTTG-AAAGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
3983007 GTGCCACTGACTTGTGGGCTTTGAAAAG-
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
* * *
3983035 GTACCACTGACTCGTGGGC-TTG-AAAGG
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
3983062 GTGCCACTGACTTGTGGGCTTTG-AAAGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
* * * *
3983090 ATGCCACTAACTCGTGGGCTTTGAAAGGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
3983119 -TGCCACTGACTTGTGGGCTTTG-AAAGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
* * *
3983146 GTACCACTAACTCGTGGGCTTTGAAAAG-
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
* *
3983174 GTACCACTGACTCT-TAGGC-TTG-AAAGA
1 GTGCCACTGACT-TGTGGGCTTTGAAAAGA
3983201 GTGCCACTGACTTGTGGGCTTTG-AAAGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
3983229 GTGCCACTGACTTGTGGGCTTTGAAAAG-
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
*
3983257 GTGCCACTAACTTGTGTGGGCTTT-AAAAGGA
1 GTGCCACTGAC-T-TGTGGGCTTTGAAAA-GA
* * *
3983288 GTGCCATTAACTTATGTGGGCTTTG-AAAGG
1 GTGCCACTGAC-T-TGTGGGCTTTGAAAAGA
3983318 GTGCCACTGACTTGTGGGCTTTG-AAAGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
* * * *
3983346 GTGCCACTGAATTGTGGGCTTCG-CAAGG
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
* * * *
3983374 GTGCCACTAAATTGTGGGCTTCG-AAAGG
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
* *
3983402 GTGCCACTAACTTGTGGGCTTTG-AAAGG
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
3983430 GTGCCACTGACTTGTGGGCTTTGAAAAGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
* * *
3983459 GTGCCACTAATTTGTGGGTTTTGAAAAGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
* * *
3983488 GTGCCACTGATTTGTGGGCTTCGAAAGGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
* *
3983517 GTGCCACTGACTTGTGGGCTTCG-AAAGG
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
* **
3983545 GTGCCACTAACTTGTGGGCTTCAAAAAG-
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
* *
3983573 GTGCCACTAACTTGTGGGCTTTG-AAAGG
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
3983601 GTGCCACTGACTTGTGGGCTTTGAAAAGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
*
3983630 GTGCCACTGATTTGTGGGCTTTGAAAAGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
* *
3983659 GCGCCACTGATTTGTGGGCTTTGAAAAGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
* *
3983688 GCGCCACTGATTTGTGGGCTTTGAAAAGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
*
3983717 GTGCCACTGACTTGTGGGCTTTGAAAGGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
*
3983746 GTGCCACTGACTTGTGGGCTTTG-AAAGG
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
3983774 GTGCCACTGACTTGTGGGCTTTGAAAAG-
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
*
3983802 GTGCCACTGATTTGTGGGCTTTGAAAAGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
* *
3983831 GTGCCACTAACTTGTGGGCTTTG-AAAGG
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
3983859 GTGCCACTGACTTGTGGGCTTTGAAAAGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
* *
3983888 GTGCCACTGATTTGTGGGCTTTGAAAAGG
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
*
3983917 GTGCCACTGACTTGTGGGCTTTGAAAAAA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
* * *
3983946 GTGCCACTAATTTGTGGGCTATGAAAAGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
3983975 GTGCCACTGACTTGTGGGCTTTGAAAAGA
1 GTGCCACTGACTTGTGGGCTTTGAAAAGA
*
3984004 GTGCCACTGATTTGTGGGCTTTGAAA
1 GTGCCACTGACTTGTGGGCTTTGAAA
3984030 GGGATGAACA
Statistics
Matches: 1041, Mismatches: 99, Indels: 64
0.86 0.08 0.05
Matches are distributed among these distances:
26 9 0.01
27 50 0.05
28 449 0.43
29 406 0.39
30 61 0.06
31 40 0.04
32 20 0.02
34 6 0.01
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.28
Consensus pattern (29 bp):
GTGCCACTGACTTGTGGGCTTTGAAAAGA
Found at i:3983683 original size:229 final size:226
Alignment explanation
Indices: 3982874--3984031 Score: 1485
Period size: 229 Copynumber: 5.1 Consensus size: 226
3982864 CACTAACACG
** * *
3982874 TGTGGGCTTTGAAAAGAGTGTTACTAACTTGCGTGGGCTTTAAAAGGGTGCCACTGACTTACGTG
1 TGTGGGCTTT-AAAAG-GTGCCACTAACTT--GTGGGCTTTGAAAGGGTGCCACTAACTT--GTG
* * * *
3982939 GGCTTTGAAAGAATGCCACTGACTCGTGGGTTTTGAAAGGA-TGCCACTGACTTGTGGGCTTTG-
60 GGCTTTGAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGA
* * *
3983002 AAAGAGTGCCACTGACTTGTGGGCTTTGAAAAG-GTACCACTGACTCGTGGGCTTGAAAGG-GTG
125 AAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGATTTGTGGGCTTGAAAGGAGTG
** *
3983065 CCACTGACTTGTGGGCTTTGAAAGAATGCCACTAACT
190 CCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACT
* * * * * *
3983102 CGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGAGTACCACTAACTCGTGGGCTT
1 TGTGGGCTTTAAAAGG-TGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTT
* *
3983167 TGAAA-AGGTACCACTGACTCT-TAGGC-TTG-AAAGAGTGCCACTGACTTGTGGGCTTTG-AAA
65 TGAAAGA-GTGCCACTGACT-TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAA
* *
3983227 GAGTGCCACTGACTTGTGGGCTTTGAAAAG-GTGCCACTAACTTGTGTGGGCTTTAAAAGGAGTG
128 GAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGA-TT-TGTGGGC-TTGAAAGGAGTG
* *
3983291 CCATTAACTTATGTGGGCTTTGAAAGGGTGCCACTGACT
190 CCACTGAC-T-TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * *
3983330 TGTGGGCTTTGAAAGAGTGCCACTGAA-TTGTGGGCTTCGCAAGGGTGCCACTAAATTGTGGGCT
1 TGTGGGCTTTAAAAG-GTGCCACT-AACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCT
* * * *
3983394 TCGAAAGGGTGCCACTAACTTGTGGGCTTTG-AAAGGGTGCCACTGACTTGTGGGCTTTGAAAAG
64 TTGAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAG
* * *
3983458 AGTGCCACTAATTTGTGGGTTTTGAAAAGAGTGCCACTGATTTGTGGGCTTCGAAAGGAGTGCCA
129 AGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGATTTGTGGGCTT-GAAAGGAGTGCCA
* *
3983523 CTGACTTGTGGGCTTCGAAAGGGTGCCACTAACT
193 CTGACTTGTGGGCTTTGAAAGGGTGCCACTGACT
* *
3983557 TGTGGGCTTCAAAAAGGTGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTT
1 TGTGGGCTT-TAAAAGGTGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTT
* * *
3983622 TGAAAAGAGTGCCACTGATTTGTGGGCTTTGAAAAGAGCGCCACTGATTTGTGGGCTTTGAAAAG
65 TG-AAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAG
* * *
3983687 AGCGCCACTGATTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCA
129 AGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGATTTGTGGGC-TTGAAAGGAGTGCCA
3983752 CTGACTTGTGGGCTTTGAAAGGGTGCCACTGACT
193 CTGACTTGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
3983786 TGTGGGCTTTGAAAAGGTGCCACTGATTTGTGGGCTTTGAAAAGAGTGCCACTAACTTGTGGGCT
1 TGTGGGCTTT-AAAAGGTGCCACTAACTTGTGGGCTTTG-AAAGGGTGCCACTAACTTGTGGGCT
* *
3983851 TTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGATTTGTGGGCTTTGAAAAG
64 TTGAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAG
* * * *
3983916 GGTGCCACTGACTTGTGGGCTTTGAAAAAAGTGCCACTAATTTGTGGGCTATGAAAAGAGTGCCA
129 AGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGATTTGTGGGCT-TGAAAGGAGTGCCA
* *
3983981 CTGACTTGTGGGCTTTGAAAAGAGTGCCACTGATT
193 CTGACTTGTGGGCTTTG-AAAGGGTGCCACTGACT
*
3984016 TGTGGGCTTTGAAAGG
1 TGTGGGCTTTAAAAGG
3984032 GATGAACATT
Statistics
Matches: 817, Mismatches: 86, Indels: 53
0.85 0.09 0.06
Matches are distributed among these distances:
221 4 0.00
222 67 0.08
223 27 0.03
224 6 0.01
225 30 0.04
226 12 0.01
227 93 0.11
228 138 0.17
229 346 0.42
230 85 0.10
231 9 0.01
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.28
Consensus pattern (226 bp):
TGTGGGCTTTAAAAGGTGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTT
GAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAAGAG
TGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGATTTGTGGGCTTGAAAGGAGTGCCACTG
ACTTGTGGGCTTTGAAAGGGTGCCACTGACT
Found at i:3985289 original size:13 final size:12
Alignment explanation
Indices: 3985271--3985321 Score: 61
Period size: 13 Copynumber: 4.2 Consensus size: 12
3985261 TTTGTTGCTA
*
3985271 TTTTTTCTTG-T
1 TTTTTTTTTGTT
3985282 TTTTTTTTTGTT
1 TTTTTTTTTGTT
3985294 TTTTTGTTTTGTT
1 TTTTT-TTTTGTT
3985307 TTTTGTTTTT-TT
1 TTTT-TTTTTGTT
3985319 TTT
1 TTT
3985322 GGGTGTAAAG
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
11 9 0.25
12 11 0.31
13 15 0.42
14 1 0.03
ACGTcount: A:0.00, C:0.02, G:0.10, T:0.88
Consensus pattern (12 bp):
TTTTTTTTTGTT
Found at i:3985295 original size:19 final size:20
Alignment explanation
Indices: 3985273--3985315 Score: 70
Period size: 19 Copynumber: 2.2 Consensus size: 20
3985263 TGTTGCTATT
3985273 TTTTCTTGTTTT-TTTTTTG
1 TTTTCTTGTTTTGTTTTTTG
*
3985292 TTTTTTTGTTTTGTTTTTTG
1 TTTTCTTGTTTTGTTTTTTG
3985312 TTTT
1 TTTT
3985316 TTTTTTGGGT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 11 0.50
20 11 0.50
ACGTcount: A:0.00, C:0.02, G:0.12, T:0.86
Consensus pattern (20 bp):
TTTTCTTGTTTTGTTTTTTG
Found at i:3985305 original size:24 final size:23
Alignment explanation
Indices: 3985278--3985322 Score: 72
Period size: 24 Copynumber: 1.9 Consensus size: 23
3985268 CTATTTTTTC
*
3985278 TTGTTTTTTTTTTGTTTTTTTGTT
1 TTGTTTTTTGTTT-TTTTTTTGTT
3985302 TTGTTTTTTGTTTTTTTTTTG
1 TTGTTTTTTGTTTTTTTTTTG
3985323 GGTGTAAAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 8 0.40
24 12 0.60
ACGTcount: A:0.00, C:0.00, G:0.13, T:0.87
Consensus pattern (23 bp):
TTGTTTTTTGTTTTTTTTTTGTT
Found at i:3985308 original size:20 final size:19
Alignment explanation
Indices: 3985272--3985318 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 19
3985262 TTGTTGCTAT
3985272 TTTTTCTTGTTTTTTTTTTG
1 TTTTT-TTGTTTTTTTTTTG
3985292 TTTTTTTGTTTTGTTTTTTG
1 TTTTTTTGTTTT-TTTTTTG
3985312 TTTTTTT
1 TTTTTTT
3985319 TTTGGGTGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
19 7 0.27
20 19 0.73
ACGTcount: A:0.00, C:0.02, G:0.11, T:0.87
Consensus pattern (19 bp):
TTTTTTTGTTTTTTTTTTG
Found at i:3985319 original size:11 final size:11
Alignment explanation
Indices: 3985271--3985322 Score: 65
Period size: 11 Copynumber: 4.9 Consensus size: 11
3985261 TTTGTTGCTA
*
3985271 TTTTTTCTTGT
1 TTTTTTTTTGT
3985282 TTTTTTTTTG-
1 TTTTTTTTTGT
3985292 --TTTTTTTGT
1 TTTTTTTTTGT
3985301 TTTGTTTTTTGT
1 TTT-TTTTTTGT
3985313 TTTTTTTTTG
1 TTTTTTTTTG
3985323 GGTGTAAAGG
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
8 8 0.22
11 17 0.47
12 11 0.31
ACGTcount: A:0.00, C:0.02, G:0.12, T:0.87
Consensus pattern (11 bp):
TTTTTTTTTGT
Found at i:3998976 original size:20 final size:20
Alignment explanation
Indices: 3998929--3999003 Score: 80
Period size: 20 Copynumber: 3.8 Consensus size: 20
3998919 AAAAAGACAT
3998929 AATGTATCGATACATT-ATA
1 AATGTATCGATACATTCATA
*
3998948 GAATATATCGATACATTCATA
1 -AATGTATCGATACATTCATA
* * * *
3998969 TATGTATCGATATATTGAAA
1 AATGTATCGATACATTCATA
*
3998989 AATGTATTGATACAT
1 AATGTATCGATACAT
3999004 CAGGGTAAAA
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 42 0.93
21 3 0.07
ACGTcount: A:0.41, C:0.09, G:0.12, T:0.37
Consensus pattern (20 bp):
AATGTATCGATACATTCATA
Found at i:3999001 original size:40 final size:39
Alignment explanation
Indices: 3998926--3999003 Score: 95
Period size: 40 Copynumber: 2.0 Consensus size: 39
3998916 GGTAAAAAGA
*
3998926 CATAATGTATCGATACATTATAGAATATATCGATACATT
1 CATAATGTATCGATACATTATAAAATATATCGATACATT
* * *
3998965 CATATATGTATCGATATATTGA-AAAATGTATTGATACAT
1 CATA-ATGTATCGATACATT-ATAAAATATATCGATACAT
3999004 CAGGGTAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
39 4 0.12
40 28 0.85
41 1 0.03
ACGTcount: A:0.41, C:0.10, G:0.12, T:0.37
Consensus pattern (39 bp):
CATAATGTATCGATACATTATAAAATATATCGATACATT
Found at i:3999049 original size:92 final size:92
Alignment explanation
Indices: 3998898--3999108 Score: 336
Period size: 92 Copynumber: 2.3 Consensus size: 92
3998888 TACATTATTC
* *
3998898 AATGTATCGATACATCTA-GGTAAAAA-GACATAATGTATCGATACATTATAGAATATATCGATA
1 AATGTATCGATACATC-AGGGTAAAAATGACATAATGTATAGATACATTACAGAATATATCGATA
*
3998961 CATTCATATATGTATCGATATATTGAAA
65 CATTCATACATGTATCGATATATTGAAA
* *
3998989 AATGTATTGATACATCAGGGTAAAAATGACATAATGTATAGATACATTGCAGAATATATCGATAC
1 AATGTATCGATACATCAGGGTAAAAATGACATAATGTATAGATACATTACAGAATATATCGATAC
3999054 ATTCATACATGTATCGATATATTGAAA
66 ATTCATACATGTATCGATATATTGAAA
* *
3999081 AATGTATCGAAAGATCAGGGTAAAAATG
1 AATGTATCGATACATCAGGGTAAAAATG
3999109 TGACTTTTTC
Statistics
Matches: 110, Mismatches: 8, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
90 1 0.01
91 23 0.21
92 86 0.78
ACGTcount: A:0.43, C:0.10, G:0.16, T:0.31
Consensus pattern (92 bp):
AATGTATCGATACATCAGGGTAAAAATGACATAATGTATAGATACATTACAGAATATATCGATAC
ATTCATACATGTATCGATATATTGAAA
Found at i:3999068 original size:20 final size:20
Alignment explanation
Indices: 3999018--3999090 Score: 76
Period size: 20 Copynumber: 3.6 Consensus size: 20
3999008 GTAAAAATGA
*
3999018 CATAATGTATAGATACATTG
1 CATAATGTATCGATACATTG
* *
3999038 CAGAATATATCGATACATT-
1 CATAATGTATCGATACATTG
*
3999057 CATACATGTATCGATATATTG
1 CATA-ATGTATCGATACATTG
* *
3999078 AAAAATGTATCGA
1 CATAATGTATCGA
3999091 AAGATCAGGG
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
19 3 0.07
20 38 0.88
21 2 0.05
ACGTcount: A:0.41, C:0.12, G:0.14, T:0.33
Consensus pattern (20 bp):
CATAATGTATCGATACATTG
Found at i:4003926 original size:26 final size:26
Alignment explanation
Indices: 4003890--4003962 Score: 101
Period size: 26 Copynumber: 2.8 Consensus size: 26
4003880 TTGTATAAAT
*
4003890 TAAAATGAAATTAATTATTATAATTA
1 TAAAATAAAATTAATTATTATAATTA
*
4003916 TAAAATAAAATTAAATATTATAATTA
1 TAAAATAAAATTAATTATTATAATTA
**
4003942 TAAAATTAAAACCAATTATTA
1 TAAAA-TAAAATTAATTATTA
4003963 AATATGTTCA
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
26 29 0.71
27 12 0.29
ACGTcount: A:0.58, C:0.03, G:0.01, T:0.38
Consensus pattern (26 bp):
TAAAATAAAATTAATTATTATAATTA
Done.