Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold407
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4418299
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 127125 characters in sequence are not A, C, G, or T
File 7 of 28
Found at i:972915 original size:51 final size:52
Alignment explanation
Indices: 972855--973240 Score: 200
Period size: 52 Copynumber: 7.4 Consensus size: 52
972845 AATTCTCCAC
* * *
972855 AATCGGGGATATTCCAACTCCGATTTTATTTTC-AAAACACTAATTTTCTAT
1 AATCGGGGATACTCCAACCCCGATTTTATTTTCGAAAACACCAATTTTCTAT
* * * * *
972906 AATCGGGGATATTCCAACTCCGATTTTATTTCCAAAAAACACCAA-TTTCTTCAC
1 AATCGGGGATACTCCAACCCCGATTTTATTTTC-GAAAACACCAATTTTC-T-AT
* ** * * * ***
972960 AATCGGGGATACTCCAACCCCG--TTGATCATCGGGGATACTCCAA-CCCCGT-T
1 AATCGGGGATACTCCAACCCCGATTTTATTTTC--GAAAACACCAATTTTC-TAT
* * * * **
973011 ATTTCCGAGGGGATACTCCAACCCCGACTTTA-TTTCTAAAATATTAATTTT-TCAT
1 A-AT-C--GGGGATACTCCAACCCCGATTTTATTTTCGAAAACACCAATTTTCT-AT
* * * * * * *
973066 AATCGGGGATATTCCAACCCCGGTTTTA-TTGCTAAAACACTAATTTTTCCAC
1 AATCGGGGATACTCCAACCCCGATTTTATTTTCGAAAACACCAA-TTTTCTAT
* * *
973118 AATCGGGGATACTCTAACCCCGGTTTTATTTTCG-AAACACCAATTTTCCTTT
1 AATCGGGGATACTCCAACCCCGATTTTATTTTCGAAAACACCAATTTT-CTAT
* * * * * *
973170 AATCGGGGATACTCCAACTCTGATTTTATTTCCAAAAATACCAATTTT-TCAC
1 AATCGGGGATACTCCAACCCCGATTTTATTTTCGAAAACACCAATTTTCT-AT
* *
973222 AGTCGAGGATACTCCAACC
1 AATCGGGGATACTCCAACC
973241 TTGTTATTTC
Statistics
Matches: 253, Mismatches: 62, Indels: 39
0.71 0.18 0.11
Matches are distributed among these distances:
51 71 0.28
52 94 0.37
53 37 0.15
54 26 0.10
55 20 0.08
56 2 0.01
57 3 0.01
ACGTcount: A:0.29, C:0.25, G:0.13, T:0.33
Consensus pattern (52 bp):
AATCGGGGATACTCCAACCCCGATTTTATTTTCGAAAACACCAATTTTCTAT
Found at i:973031 original size:28 final size:27
Alignment explanation
Indices: 972961--973036 Score: 102
Period size: 27 Copynumber: 2.8 Consensus size: 27
972951 TTTCTTCACA
972961 ATCGGGGATACTCCAACCCCGTTGATC
1 ATCGGGGATACTCCAACCCCGTTGATC
972988 ATCGGGGATACTCCAACCCCGTT-AT-
1 ATCGGGGATACTCCAACCCCGTTGATC
*
973013 TTCCGAGGGGATACTCCAACCCCG
1 AT-C--GGGGATACTCCAACCCCG
973037 ACTTTATTTC
Statistics
Matches: 45, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
25 1 0.02
26 3 0.07
27 23 0.51
28 18 0.40
ACGTcount: A:0.22, C:0.34, G:0.22, T:0.21
Consensus pattern (27 bp):
ATCGGGGATACTCCAACCCCGTTGATC
Found at i:973260 original size:28 final size:28
Alignment explanation
Indices: 973228--973299 Score: 90
Period size: 28 Copynumber: 2.6 Consensus size: 28
973218 TCACAGTCGA
** * **
973228 GGATACTCCAACCTTGTTATTTCATCGG
1 GGATACTCCAACCCCGTTACTTCAGAGG
*
973256 GGATACTCCAACCCCGTTACTTCCGAGG
1 GGATACTCCAACCCCGTTACTTCAGAGG
973284 GGATACTCCAACCCCG
1 GGATACTCCAACCCCG
973300 CTTTATTCCC
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.22, C:0.33, G:0.19, T:0.25
Consensus pattern (28 bp):
GGATACTCCAACCCCGTTACTTCAGAGG
Found at i:973400 original size:78 final size:78
Alignment explanation
Indices: 973253--973455 Score: 246
Period size: 78 Copynumber: 2.6 Consensus size: 78
973243 GTTATTTCAT
* * * *
973253 CGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGCTTTATTCCCAAAATATT
1 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGATTTATTCCCAAAATATC
* *
973318 GATTTCTCATAAT
66 GATTTCTCACAAC
* * * ** *
973331 TGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAATCCCGATTTTTTTTC-TAATCAT
1 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGATTTATTCCCAAAAT-AT
973395 CGATTTCTCACAAC
65 CGATTTCTCACAAC
* * * *
973409 CGGGGATACTCCAGCCCCGTTATTTTCAAGGGAACACTCCAACCCCG
1 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCG
973456 TTATTATCTC
Statistics
Matches: 106, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
77 3 0.03
78 103 0.97
ACGTcount: A:0.24, C:0.31, G:0.17, T:0.29
Consensus pattern (78 bp):
CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGATTTATTCCCAAAATATC
GATTTCTCACAAC
Found at i:982436 original size:21 final size:21
Alignment explanation
Indices: 982407--982461 Score: 101
Period size: 21 Copynumber: 2.6 Consensus size: 21
982397 CCAATCACCT
982407 GTATCGATACATTCTTAACAA
1 GTATCGATACATTCTTAACAA
*
982428 GTATTGATACATTCTTAACAA
1 GTATCGATACATTCTTAACAA
982449 GTATCGATACATT
1 GTATCGATACATT
982462 TGGTCATGTA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.36
Consensus pattern (21 bp):
GTATCGATACATTCTTAACAA
Found at i:982485 original size:13 final size:13
Alignment explanation
Indices: 982467--982491 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
982457 ACATTTGGTC
982467 ATGTATCGATACA
1 ATGTATCGATACA
982480 ATGTATCGATAC
1 ATGTATCGATAC
982492 TGTGCAATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:983130 original size:16 final size:16
Alignment explanation
Indices: 983109--983140 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
983099 TTTTAATCAT
983109 AAGTTTCTTTCTCCCC
1 AAGTTTCTTTCTCCCC
983125 AAGTTTCTTTCTCCCC
1 AAGTTTCTTTCTCCCC
983141 CTTAATCATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.38, G:0.06, T:0.44
Consensus pattern (16 bp):
AAGTTTCTTTCTCCCC
Found at i:984501 original size:13 final size:13
Alignment explanation
Indices: 984483--984507 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
984473 CATTTTATGG
984483 TGTATCGATACAA
1 TGTATCGATACAA
984496 TGTATCGATACA
1 TGTATCGATACA
984508 TACTGTGTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:984507 original size:33 final size:32
Alignment explanation
Indices: 984460--984527 Score: 91
Period size: 33 Copynumber: 2.1 Consensus size: 32
984450 CGTTACAAGC
**
984460 CAATGTATCAATACATTTTATGGTGTATCGATA
1 CAATGTATCAATACATACTAT-GTGTATCGATA
* *
984493 CAATGTATCGATACATACTGTGTGTATCGATA
1 CAATGTATCAATACATACTATGTGTATCGATA
984525 CAA
1 CAA
984528 GTTTGGCTAC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
32 14 0.45
33 17 0.55
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
Consensus pattern (32 bp):
CAATGTATCAATACATACTATGTGTATCGATA
Found at i:984606 original size:20 final size:21
Alignment explanation
Indices: 984559--984611 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 21
984549 GCTAATGACC
**
984559 TGTATCGATACATCTTTTTCA
1 TGTATCGATACATCTTGGTCA
*
984580 AGTATCGATACAT-TTGGTCA
1 TGTATCGATACATCTTGGTCA
984600 TGTATCGATACA
1 TGTATCGATACA
984612 ATGTATCGAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 16 0.57
21 12 0.43
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (21 bp):
TGTATCGATACATCTTGGTCA
Found at i:984617 original size:13 final size:13
Alignment explanation
Indices: 984599--984623 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
984589 ACATTTGGTC
984599 ATGTATCGATACA
1 ATGTATCGATACA
984612 ATGTATCGATAC
1 ATGTATCGATAC
984624 TGTGCAACAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:987092 original size:13 final size:13
Alignment explanation
Indices: 987074--987112 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
987064 ATAATCCCCT
987074 TGTATCGATACAG
1 TGTATCGATACAG
*
987087 TGTATCGATACAA
1 TGTATCGATACAG
987100 TGTATCGATACAG
1 TGTATCGATACAG
987113 AAAATGCTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.33, C:0.15, G:0.21, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:987327 original size:8 final size:8
Alignment explanation
Indices: 987314--987339 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
987304 AACATCATTC
987314 ATCACAAA
1 ATCACAAA
987322 ATCACAAA
1 ATCACAAA
987330 ATCACAAA
1 ATCACAAA
987338 AT
1 AT
987340 TTAATCAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.62, C:0.23, G:0.00, T:0.15
Consensus pattern (8 bp):
ATCACAAA
Found at i:991239 original size:16 final size:16
Alignment explanation
Indices: 991218--991260 Score: 86
Period size: 16 Copynumber: 2.7 Consensus size: 16
991208 TTTGTTCAAG
991218 ATTTTCAATTTCAATA
1 ATTTTCAATTTCAATA
991234 ATTTTCAATTTCAATA
1 ATTTTCAATTTCAATA
991250 ATTTTCAATTT
1 ATTTTCAATTT
991261 ATTATCTTCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.35, C:0.12, G:0.00, T:0.53
Consensus pattern (16 bp):
ATTTTCAATTTCAATA
Found at i:993339 original size:33 final size:32
Alignment explanation
Indices: 993296--993363 Score: 91
Period size: 33 Copynumber: 2.1 Consensus size: 32
993286 CGTTACAAGC
* **
993296 CAATGTATCGATACATTTTATGGTGTATCGATA
1 CAATGCATCGATACATACTAT-GTGTATCGATA
*
993329 CAATGCATCGATACATACTGTGTGTATCGATA
1 CAATGCATCGATACATACTATGTGTATCGATA
993361 CAA
1 CAA
993364 GTTTGGCTAC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
32 14 0.45
33 17 0.55
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (32 bp):
CAATGCATCGATACATACTATGTGTATCGATA
Found at i:993442 original size:20 final size:21
Alignment explanation
Indices: 993395--993447 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 21
993385 GCCAATGACC
**
993395 TGTATCGATACATCTTTTTCA
1 TGTATCGATACATCTTGGTCA
*
993416 AGTATCGATACAT-TTGGTCA
1 TGTATCGATACATCTTGGTCA
993436 TGTATCGATACA
1 TGTATCGATACA
993448 ATGTATGGAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 16 0.57
21 12 0.43
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (21 bp):
TGTATCGATACATCTTGGTCA
Found at i:996009 original size:19 final size:18
Alignment explanation
Indices: 995984--996051 Score: 74
Period size: 19 Copynumber: 3.9 Consensus size: 18
995974 AATTCAACAA
995984 TTTGTATCGATACATAAG
1 TTTGTATCGATACATAAG
996002 TGTTGTATCGATAC--AA-
1 T-TTGTATCGATACATAAG
*
996018 --TGTATTGATACATAAG
1 TTTGTATCGATACATAAG
996034 TATTGTATCGATACATAA
1 T-TTGTATCGATACATAA
996052 TTAGCTACTG
Statistics
Matches: 41, Mismatches: 2, Indels: 13
0.73 0.04 0.23
Matches are distributed among these distances:
13 10 0.24
15 2 0.05
17 2 0.05
18 1 0.02
19 26 0.63
ACGTcount: A:0.35, C:0.10, G:0.16, T:0.38
Consensus pattern (18 bp):
TTTGTATCGATACATAAG
Found at i:996028 original size:32 final size:32
Alignment explanation
Indices: 995986--996048 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
995976 TTCAACAATT
*
995986 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
*
996018 TGTATTGATACATAAGTATTGTATCGATACA
1 TGTATCGATACATAAGTATTGTATCGATACA
996049 TAATTAGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.35, C:0.11, G:0.17, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCGATACAA
Found at i:996109 original size:13 final size:13
Alignment explanation
Indices: 996091--996116 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
996081 CATTTTTCTG
996091 TGTATCGATACAT
1 TGTATCGATACAT
996104 TGTATCGATACAT
1 TGTATCGATACAT
996117 CTATTCTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:996134 original size:34 final size:33
Alignment explanation
Indices: 996071--996137 Score: 107
Period size: 34 Copynumber: 2.0 Consensus size: 33
996061 GCCAAGGAAA
*
996071 TGTATCGATACATTTTTCTGTGTATCGATACAT
1 TGTATCGATACATTATTCTGTGTATCGATACAT
*
996104 TGTATCGATACATCTATTCTTTGTATCGATACAT
1 TGTATCGATACAT-TATTCTGTGTATCGATACAT
996138 CTAGGAAGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 13 0.42
34 18 0.58
ACGTcount: A:0.25, C:0.16, G:0.13, T:0.45
Consensus pattern (33 bp):
TGTATCGATACATTATTCTGTGTATCGATACAT
Found at i:998717 original size:132 final size:132
Alignment explanation
Indices: 998477--998718 Score: 351
Period size: 132 Copynumber: 1.8 Consensus size: 132
998467 AGTTCTCCAC
* *
998477 AATCGGGGATACTCCAAATCCGATTTTATTTCCAAAAAACACCAATTTTTCAAAATCGGGGATAC
1 AATCGGGGATACTCCAAATCCGATTATATTTCCAAAAAACACCAATTTTTCAAAATCGAGGATAC
* * * *
998542 TCCAACCCCGTTAATCATCGGGGATACTCTAACCTCGGTTTTATTTTCAAAACACCAATTTTCCT
66 TCCAACCCCGTTAATCATCAGGGATACTCCAACCCCGGCTTTATTTTCAAAACACCAATTTTCCT
998607 TT
131 TT
* * * * *
998609 AATCGGTGATACTCCAACTCCGATTATATTTCC-AAAAACACCAATTTTTTACAATTGAGGATAC
1 AATCGGGGATACTCCAAATCCGATTATATTTCCAAAAAACACCAATTTTTCAAAATCGAGGATAC
* *
998673 TCCAACCTCGTTATTTCATCAGGGATACTCCAACCCCGGCTTTATT
66 TCCAACCCCGTTA-ATCATCAGGGATACTCCAACCCCGGCTTTATT
998719 CCCAAAATAT
Statistics
Matches: 96, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
131 39 0.41
132 57 0.59
ACGTcount: A:0.31, C:0.26, G:0.12, T:0.32
Consensus pattern (132 bp):
AATCGGGGATACTCCAAATCCGATTATATTTCCAAAAAACACCAATTTTTCAAAATCGAGGATAC
TCCAACCCCGTTAATCATCAGGGATACTCCAACCCCGGCTTTATTTTCAAAACACCAATTTTCCT
TT
Found at i:1001384 original size:13 final size:13
Alignment explanation
Indices: 1001365--1001403 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
1001355 ACTATTTATG
1001365 ATGTATCGATACA
1 ATGTATCGATACA
*
1001378 CTGTATCGATACA
1 ATGTATCGATACA
1001391 ATGTATCGATACA
1 ATGTATCGATACA
1001404 TGAATAGTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1001600 original size:53 final size:53
Alignment explanation
Indices: 1001542--1001678 Score: 204
Period size: 53 Copynumber: 2.6 Consensus size: 53
1001532 CTACTACCAA
*
1001542 TGTATCGATACATAGTT-TGTGTATCGATACAAATTTGACTACTGCCAGTGACC
1 TGTATCGATACATA-TTGTGTGTATCGATACAAATTTGACTACTGCCAATGACC
* * *
1001595 TGTATCGATACATATTGTGTGTATCGATACAAATTTGGCTACTGCCAATGTCT
1 TGTATCGATACATATTGTGTGTATCGATACAAATTTGACTACTGCCAATGACC
*
1001648 TGTATCAATACATATTTGTGTGTATCGATAC
1 TGTATCGATACATA-TTGTGTGTATCGATAC
1001679 TATGCAATCT
Statistics
Matches: 77, Mismatches: 5, Indels: 3
0.91 0.06 0.04
Matches are distributed among these distances:
52 2 0.03
53 59 0.77
54 16 0.21
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (53 bp):
TGTATCGATACATATTGTGTGTATCGATACAAATTTGACTACTGCCAATGACC
Found at i:1001711 original size:20 final size:20
Alignment explanation
Indices: 1001666--1001713 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
1001656 TACATATTTG
*
1001666 TGTGTATCGATACTATGCAA
1 TGTGTATCGATACTATGAAA
* *
1001686 TCTGTATCGATAC-ATTTAAA
1 TGTGTATCGATACTA-TGAAA
1001706 TGTGTATC
1 TGTGTATC
1001714 AATATTTTTC
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
19 1 0.04
20 22 0.96
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.40
Consensus pattern (20 bp):
TGTGTATCGATACTATGAAA
Found at i:1002356 original size:4 final size:4
Alignment explanation
Indices: 1002347--1002379 Score: 66
Period size: 4 Copynumber: 8.2 Consensus size: 4
1002337 TCTTGAGGTG
1002347 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA T
1002380 CTGTTTGTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:1012709 original size:1 final size:1
Alignment explanation
Indices: 1012703--1012778 Score: 53
Period size: 1 Copynumber: 76.0 Consensus size: 1
1012693 CCTTCTCTTC
** * * * * * * * *
1012703 AAAAAAAAAGCAACAAAAAAACAAAAAACAAAAAAACAAAAAAAACAAAACAAAGAAAAAAGAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
*
1012768 AAAAAGAAAAA
1 AAAAAAAAAAA
1012779 TCTGCTTAAG
Statistics
Matches: 54, Mismatches: 21, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
1 54 1.00
ACGTcount: A:0.86, C:0.09, G:0.05, T:0.00
Consensus pattern (1 bp):
A
Found at i:1012723 original size:15 final size:15
Alignment explanation
Indices: 1012714--1012778 Score: 73
Period size: 14 Copynumber: 4.5 Consensus size: 15
1012704 AAAAAAAAGC
1012714 AACAAAAAAACAAAA
1 AACAAAAAAACAAAA
1012729 AACAAAAAAACAAAA
1 AACAAAAAAACAAAA
* *
1012744 AA-AACAAAACAAAG
1 AACAAAAAAACAAAA
*
1012758 AA-AAAAGAA-AAAA
1 AACAAAAAAACAAAA
*
1012771 AAGAAAAA
1 AACAAAAA
1012779 TCTGCTTAAG
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
13 5 0.12
14 21 0.49
15 17 0.40
ACGTcount: A:0.86, C:0.09, G:0.05, T:0.00
Consensus pattern (15 bp):
AACAAAAAAACAAAA
Found at i:1012727 original size:8 final size:8
Alignment explanation
Indices: 1012714--1012778 Score: 71
Period size: 8 Copynumber: 8.0 Consensus size: 8
1012704 AAAAAAAAGC
1012714 AACAAAAA
1 AACAAAAA
1012722 AAC-AAAA
1 AACAAAAA
1012729 AACAAAAA
1 AACAAAAA
1012737 AACAAAAAA
1 AAC-AAAAA
1012746 AACAAAACA
1 AACAAAA-A
*
1012755 AAGAAAAA
1 AACAAAAA
1012763 AGA-AAAAA
1 A-ACAAAAA
*
1012771 AAGAAAAA
1 AACAAAAA
1012779 TCTGCTTAAG
Statistics
Matches: 51, Mismatches: 1, Indels: 10
0.82 0.02 0.16
Matches are distributed among these distances:
7 8 0.16
8 27 0.53
9 16 0.31
ACGTcount: A:0.86, C:0.09, G:0.05, T:0.00
Consensus pattern (8 bp):
AACAAAAA
Found at i:1012773 original size:9 final size:9
Alignment explanation
Indices: 1012704--1012778 Score: 59
Period size: 9 Copynumber: 8.6 Consensus size: 9
1012694 CTTCTCTTCA
1012704 AAAAAAAAG
1 AAAAAAAAG
1012713 CAACAAAAAA-
1 -AA-AAAAAAG
*
1012723 ACAAAAAA-
1 AAAAAAAAG
* *
1012731 CAAAAAAAC
1 AAAAAAAAG
*
1012740 AAAAAAAAC
1 AAAAAAAAG
*
1012749 AAAACAAAG
1 AAAAAAAAG
1012758 --AAAAAAG
1 AAAAAAAAG
1012765 AAAAAAAAG
1 AAAAAAAAG
1012774 AAAAA
1 AAAAA
1012779 TCTGCTTAAG
Statistics
Matches: 54, Mismatches: 7, Indels: 9
0.77 0.10 0.13
Matches are distributed among these distances:
7 6 0.11
8 12 0.22
9 28 0.52
10 2 0.04
11 6 0.11
ACGTcount: A:0.85, C:0.09, G:0.05, T:0.00
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:1013850 original size:59 final size:59
Alignment explanation
Indices: 1013744--1014293 Score: 824
Period size: 59 Copynumber: 9.3 Consensus size: 59
1013734 TCCGCTTTTT
*
1013744 AGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
1 AGTCCTCAAAGAGCAGGACGCC-TTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
1013804 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
*
1013863 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACCCAAGTTGGTGGCACCTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
** *
1013922 AGTCCTCAAAGAGTGGGACACCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
* ** *
1013981 AGTCCTCAAAGAGCGGGACGTTTTTTCTTTTAAAGCCCACATAAGTTGGTGGCACCTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
*
1014040 AGTCCTCAAAGAGC-GAGACGCCTTTTCTTTTAAAGCCCACCCAAGTTGGTGGCACCTTC
1 AGTCCTCAAAGAGCAG-GACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
* *
1014099 AGTCCTCAAAGAGCAGGATGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTC
1 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTT-AAAGCCCACACAAGTTGGTGGCACC-TTC
* * * *
1014160 AGTCCTCAAAGAGCAGGATGCTTTTTCTTTTCAAAGCCCACACAAATTGGTGGCACCTTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTT-AAAGCCCACACAAGTTGGTGGCACC-TTC
* * *
1014221 AGTCCTCAAAGAGCAGGACGCC-TTTC----AAAGCCCACACGAGTTGGTGGCACTTTTT
1 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCAC-CTTC
1014276 AGTCCTCAAAGAGCAGGA
1 AGTCCTCAAAGAGCAGGA
1014294 TACACTTTAT
Statistics
Matches: 460, Mismatches: 25, Indels: 15
0.92 0.05 0.03
Matches are distributed among these distances:
55 43 0.09
58 1 0.00
59 284 0.62
60 50 0.11
61 82 0.18
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (59 bp):
AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
Found at i:1015153 original size:19 final size:18
Alignment explanation
Indices: 1015128--1015195 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
1015118 AATTCAACAA
1015128 TTTGTATCGATACATAAG
1 TTTGTATCGATACATAAG
1015146 TGTTGTATCGATAC--AA-
1 T-TTGTATCGATACATAAG
1015162 --TGTATCGATACATAAG
1 TTTGTATCGATACATAAG
1015178 TATTGTATCGATACATAA
1 T-TTGTATCGATACATAA
1015196 TTAGCTACTG
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 2 0.05
18 1 0.02
19 27 0.63
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.37
Consensus pattern (18 bp):
TTTGTATCGATACATAAG
Found at i:1015167 original size:13 final size:13
Alignment explanation
Indices: 1015149--1015173 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1015139 ACATAAGTGT
1015149 TGTATCGATACAA
1 TGTATCGATACAA
1015162 TGTATCGATACA
1 TGTATCGATACA
1015174 TAAGTATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1015167 original size:32 final size:32
Alignment explanation
Indices: 1015130--1015192 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
1015120 TTCAACAATT
*
1015130 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
1015162 TGTATCGATACATAAGTATTGTATCGATACA
1 TGTATCGATACATAAGTATTGTATCGATACA
1015193 TAATTAGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.35
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCGATACAA
Found at i:1015253 original size:13 final size:13
Alignment explanation
Indices: 1015235--1015260 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1015225 CATTTTTCTG
1015235 TGTATCGATACAT
1 TGTATCGATACAT
1015248 TGTATCGATACAT
1 TGTATCGATACAT
1015261 CTATTCTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1015278 original size:34 final size:33
Alignment explanation
Indices: 1015215--1015280 Score: 105
Period size: 34 Copynumber: 2.0 Consensus size: 33
1015205 GCCAAGGAAA
*
1015215 TGTATCGATACATTTTTCTGTGTATCGATACAT
1 TGTATCGATACATTATTCTGTGTATCGATACAT
*
1015248 TGTATCGATACATCTATTCTTTGTATCGATACA
1 TGTATCGATACAT-TATTCTGTGTATCGATACA
1015281 ACTAGGAAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 13 0.43
34 17 0.57
ACGTcount: A:0.26, C:0.17, G:0.14, T:0.44
Consensus pattern (33 bp):
TGTATCGATACATTATTCTGTGTATCGATACAT
Found at i:1024459 original size:19 final size:19
Alignment explanation
Indices: 1024404--1024465 Score: 64
Period size: 13 Copynumber: 3.5 Consensus size: 19
1024394 CAAATCAATT
*
1024404 TATCGATACATTTTGTGATG
1 TATCGATACATATTGTG-TG
1024424 TATCGATACA-A-----TG
1 TATCGATACATATTGTGTG
1024437 TATCGATACATATTGTGTG
1 TATCGATACATATTGTGTG
1024456 TATCGATACA
1 TATCGATACA
1024466 AACAGTTAAG
Statistics
Matches: 35, Mismatches: 1, Indels: 13
0.71 0.02 0.27
Matches are distributed among these distances:
13 12 0.34
14 1 0.03
19 12 0.34
20 10 0.29
ACGTcount: A:0.31, C:0.13, G:0.18, T:0.39
Consensus pattern (19 bp):
TATCGATACATATTGTGTG
Found at i:1024463 original size:32 final size:33
Alignment explanation
Indices: 1024399--1024466 Score: 111
Period size: 33 Copynumber: 2.1 Consensus size: 33
1024389 CGTTACAAAT
* *
1024399 CAATTTATCGATACATTTTGTGATGTATCGATA
1 CAATGTATCGATACATATTGTGATGTATCGATA
1024432 CAATGTATCGATACATATTGTG-TGTATCGATA
1 CAATGTATCGATACATATTGTGATGTATCGATA
1024464 CAA
1 CAA
1024467 ACAGTTAAGG
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
32 13 0.39
33 20 0.61
ACGTcount: A:0.32, C:0.13, G:0.16, T:0.38
Consensus pattern (33 bp):
CAATGTATCGATACATATTGTGATGTATCGATA
Found at i:1024565 original size:13 final size:13
Alignment explanation
Indices: 1024547--1024571 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1024537 ATATTTGGTC
1024547 ATGTATCGATACA
1 ATGTATCGATACA
1024560 ATGTATCGATAC
1 ATGTATCGATAC
1024572 TGTGCAATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1031920 original size:20 final size:18
Alignment explanation
Indices: 1031880--1031922 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
1031870 TCAATGATTA
* *
1031880 AAAAATTTAAAAACAATT
1 AAAAATTAAAAAACAAAT
1031898 AAAAATTAATAAAACTAAAT
1 AAAAATTAA-AAAAC-AAAT
1031918 AAAAA
1 AAAAA
1031923 CCTTTAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 8 0.38
19 5 0.24
20 8 0.38
ACGTcount: A:0.72, C:0.05, G:0.00, T:0.23
Consensus pattern (18 bp):
AAAAATTAAAAAACAAAT
Found at i:1032797 original size:35 final size:35
Alignment explanation
Indices: 1032711--1032795 Score: 104
Period size: 36 Copynumber: 2.4 Consensus size: 35
1032701 AAAATTACTA
1032711 TTTAAATAATAAAAAATATTTTTATTTAAATTTAAT
1 TTTAAATAAT-AAAAATATTTTTATTTAAATTTAAT
*
1032747 TATAAAT-ATAAAAATATTTTTAAATTT-AATATT-AT
1 TTTAAATAATAAAAATATTTTT--ATTTAAAT-TTAAT
1032782 TTTAAATAATAAAA
1 TTTAAATAATAAAA
1032796 TAAACTTTTG
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
34 12 0.28
35 13 0.30
36 18 0.42
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (35 bp):
TTTAAATAATAAAAATATTTTTATTTAAATTTAAT
Found at i:1033134 original size:18 final size:19
Alignment explanation
Indices: 1033107--1033157 Score: 52
Period size: 18 Copynumber: 2.7 Consensus size: 19
1033097 TTTTTATTTT
*
1033107 TTACTCAAAATATTTTTTAA
1 TTACT-AAAATATTCTTTAA
1033127 TTA-TAAAAT-TATCTTTAA
1 TTACTAAAATAT-TCTTTAA
*
1033145 TTACTATAATATT
1 TTACTAAAATATT
1033158 AAAATATAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 7
0.74 0.06 0.20
Matches are distributed among these distances:
17 1 0.04
18 14 0.54
19 7 0.27
20 4 0.15
ACGTcount: A:0.41, C:0.08, G:0.00, T:0.51
Consensus pattern (19 bp):
TTACTAAAATATTCTTTAA
Found at i:1033819 original size:16 final size:17
Alignment explanation
Indices: 1033789--1033832 Score: 56
Period size: 17 Copynumber: 2.7 Consensus size: 17
1033779 TTATTATTTT
*
1033789 ATAATTAAAAA-TAATA
1 ATAAATAAAAATTAATA
1033805 A-AAATAAAAATTAATA
1 ATAAATAAAAATTAATA
*
1033821 ATTAATAAAAAT
1 ATAAATAAAAAT
1033833 ATATATTTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 8 0.33
16 7 0.29
17 9 0.38
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
ATAAATAAAAATTAATA
Found at i:1038479 original size:16 final size:16
Alignment explanation
Indices: 1038458--1038488 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
1038448 CAAGTTTGGT
1038458 GTTTTTTTTTTTTTGA
1 GTTTTTTTTTTTTTGA
1038474 GTTTTTTTTTTTTTG
1 GTTTTTTTTTTTTTG
1038489 CCAACAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.03, C:0.00, G:0.13, T:0.84
Consensus pattern (16 bp):
GTTTTTTTTTTTTTGA
Found at i:1039890 original size:24 final size:24
Alignment explanation
Indices: 1039841--1039890 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
1039831 GCTCTTATCT
*
1039841 AATTAATGGATCAAAATTATTTAA
1 AATTAATGGATCAAAATTATTCAA
1039865 AATTAATGTGAT-AAATATT-TTCAA
1 AATTAATG-GATCAAA-ATTATTCAA
1039889 AA
1 AA
1039891 ATATATTTGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
24 17 0.74
25 6 0.26
ACGTcount: A:0.50, C:0.04, G:0.08, T:0.38
Consensus pattern (24 bp):
AATTAATGGATCAAAATTATTCAA
Found at i:1042199 original size:2 final size:2
Alignment explanation
Indices: 1042194--1042233 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
1042184 ACACACACAG
1042194 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1042234 GGATTTGGGC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1043675 original size:15 final size:15
Alignment explanation
Indices: 1043633--1043676 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
1043623 GTCTGAGTTA
*
1043633 TTTGAGTTTGAATCAT
1 TTTGAGTTTG-GTCAT
*
1043649 TTTG-GATTGGTCAT
1 TTTGAGTTTGGTCAT
1043663 TTTGAGTTTGGTCA
1 TTTGAGTTTGGTCA
1043677 AATAGAGTTG
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
14 8 0.33
15 12 0.50
16 4 0.17
ACGTcount: A:0.18, C:0.07, G:0.25, T:0.50
Consensus pattern (15 bp):
TTTGAGTTTGGTCAT
Found at i:1043959 original size:20 final size:21
Alignment explanation
Indices: 1043934--1043991 Score: 59
Period size: 20 Copynumber: 2.9 Consensus size: 21
1043924 TATTTTTACA
1043934 TATTATA-ATTATATTTAAAG
1 TATTATACATTATATTTAAAG
* * *
1043954 TATTATATATT-TATATAAAT
1 TATTATACATTATATTTAAAG
1043974 TATTAATACATTA-ATTTA
1 TATT-ATACATTATATTTA
1043992 TGTTTTATAA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
20 18 0.58
21 13 0.42
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (21 bp):
TATTATACATTATATTTAAAG
Found at i:1043967 original size:22 final size:20
Alignment explanation
Indices: 1043921--1043969 Score: 55
Period size: 19 Copynumber: 2.4 Consensus size: 20
1043911 TGTCTTGTTC
* *
1043921 ATTTATTTTTACATATTATA
1 ATTTATATTTAAATATTATA
1043941 A-TTATATTTAAAGTATTATA
1 ATTTATATTTAAA-TATTATA
1043961 TATTTATAT
1 -ATTTATAT
1043970 AAATTATTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
19 9 0.38
20 8 0.33
21 1 0.04
22 6 0.25
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (20 bp):
ATTTATATTTAAATATTATA
Found at i:1044326 original size:16 final size:16
Alignment explanation
Indices: 1044305--1044356 Score: 52
Period size: 16 Copynumber: 3.3 Consensus size: 16
1044295 GAGTTTTAGA
*
1044305 TATATTTATATTATGT
1 TATATTTATAATATGT
* *
1044321 TATATTTTTAATATTT
1 TATATTTATAATATGT
* *
1044337 TATATTAATTATAT-T
1 TATATTTATAATATGT
1044352 TATAT
1 TATAT
1044357 AATTGTGTTT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
15 6 0.20
16 24 0.80
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (16 bp):
TATATTTATAATATGT
Found at i:1044367 original size:14 final size:15
Alignment explanation
Indices: 1044305--1044360 Score: 52
Period size: 14 Copynumber: 4.1 Consensus size: 15
1044295 GAGTTTTAGA
*
1044305 TATATTTATATTATGT
1 TATATTTATATTA-AT
1044321 TATA-TT-T-TTAA-
1 TATATTTATATTAAT
1044332 TAT-TTTATATTAAT
1 TATATTTATATTAAT
1044346 TATATTTATA-TAAT
1 TATATTTATATTAAT
1044360 T
1 T
1044361 GTGTTTAAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 12
0.72 0.02 0.26
Matches are distributed among these distances:
11 5 0.15
12 1 0.03
13 7 0.21
14 9 0.26
15 8 0.24
16 4 0.12
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (15 bp):
TATATTTATATTAAT
Found at i:1044733 original size:21 final size:23
Alignment explanation
Indices: 1044707--1044759 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
1044697 TATTACATTT
1044707 TATTAT-ATAAAAA-A-TAAATAA
1 TATTATAATAAAAATATTAAA-AA
1044728 TATTATAATAAAAATATTAAAAA
1 TATTATAATAAAAATATTAAAAA
*
1044751 TATTTTAAT
1 TATTATAAT
1044760 TTTCAAAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
21 6 0.21
22 7 0.25
23 11 0.39
24 4 0.14
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (23 bp):
TATTATAATAAAAATATTAAAAA
Found at i:1045541 original size:68 final size:70
Alignment explanation
Indices: 1045460--1045592 Score: 175
Period size: 70 Copynumber: 1.9 Consensus size: 70
1045450 TTTTTATAAA
** *
1045460 TTAATTAAATTTAAAAAATTTA-ATAAAT-AA-TAATGTATTAATTATTGTTTTT-TAATAAAAA
1 TTAATTAAATTT-AAAAATTTACATAAATAAATTAAAATATTAATTATT-TTTTTAAAATAAAAA
1045521 ATAATAT
64 ATAATAT
* *
1045528 TTAATTAACTTTAAAAATTTACATTAATAAATTAAAATATTAATTATTTTTTTAAAATAAAAAAT
1 TTAATTAAATTTAAAAATTTACATAAATAAATTAAAATATTAATTATTTTTTTAAAATAAAAAAT
1045593 TAAATTAAAA
Statistics
Matches: 56, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
67 9 0.16
68 16 0.29
69 7 0.12
70 24 0.43
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.45
Consensus pattern (70 bp):
TTAATTAAATTTAAAAATTTACATAAATAAATTAAAATATTAATTATTTTTTTAAAATAAAAAAT
AATAT
Found at i:1045726 original size:33 final size:33
Alignment explanation
Indices: 1045674--1045749 Score: 84
Period size: 35 Copynumber: 2.3 Consensus size: 33
1045664 TTACATTAAC
*
1045674 AAATTAAAATATTAATTATTA-AGTTTTT-ATAA
1 AAATAAAAATATTAATTATTATAGTTTTTAAT-A
* *
1045706 AAATAAAAAGTATTTATTATTATTATTTTTTAATA
1 AAATAAAAA-TATTAATTATTA-TAGTTTTTAATA
1045741 AAATAAAAA
1 AAATAAAAA
1045750 AATGATATTT
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
32 8 0.22
33 11 0.30
35 16 0.43
36 2 0.05
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (33 bp):
AAATAAAAATATTAATTATTATAGTTTTTAATA
Found at i:1045790 original size:114 final size:114
Alignment explanation
Indices: 1045513--1045796 Score: 357
Period size: 118 Copynumber: 2.5 Consensus size: 114
1045503 ATTGTTTTTT
*
1045513 AATAAAAAATAATATTTAATTAACTTT-AAAAATTTACATTAATAAATTAAAATATTAATTATTT
1 AATAAAAAATAATATTTAATTAACTTTAAAAAATTTACATTAACAAATTAAAATATTAATTATTT
1045577 TTTTAAAATAAAAAATTAAATTAAAAAAGGTTTATTATTATTATTTTTAATAA
66 TTTT--AATAAAAAATTAAA-TAAAAAA-GTTTATTATTATTATTTTTAATAA
* * *
1045630 AATTAAAAATAATATTTAATTAAGTTTAAAAAAATTACATTAACAAATTAAAATATTAATTATTA
1 AATAAAAAATAATATTTAATTAACTTTAAAAAATTTACATTAACAAATTAAAATATTAATTATT-
**
1045695 AGTTTTT-AT-AAAAA-T-AA-AAAGTA-TTTATTATTATTATTTTTTAATAA
65 --TTTTTAATAAAAAATTAAATAAAAAAGTTTATTATTATTA-TTTTTAATAA
* *
1045742 AATAAAAAAATGATATTTAATTAAATTTTAAAAAATTTACATTAACAAATTAAAA
1 AAT-AAAAAATAATATTTAATT-AACTTTAAAAAATTTACATTAACAAATTAAAA
1045797 AAATAACATT
Statistics
Matches: 150, Mismatches: 10, Indels: 17
0.85 0.06 0.10
Matches are distributed among these distances:
111 13 0.09
112 13 0.09
113 20 0.13
114 30 0.20
115 2 0.01
116 1 0.01
117 30 0.20
118 36 0.24
121 5 0.03
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (114 bp):
AATAAAAAATAATATTTAATTAACTTTAAAAAATTTACATTAACAAATTAAAATATTAATTATTT
TTTTAATAAAAAATTAAATAAAAAAGTTTATTATTATTATTTTTAATAA
Found at i:1045797 original size:22 final size:22
Alignment explanation
Indices: 1045769--1045844 Score: 73
Period size: 23 Copynumber: 3.4 Consensus size: 22
1045759 TAATTAAATT
*
1045769 TTAAAAAATTTACATTAACAAA
1 TTAAAAAAATTACATTAACAAA
* **
1045791 TTAAAAAAATAACATTTAAGGAA
1 TTAAAAAAATTACA-TTAACAAA
*
1045814 TTAAAAAAATTATCATTATTCAAA
1 TTAAAAAAATTA-CATTA-ACAAA
1045838 -TAAAAAA
1 TTAAAAAA
1045845 TCCTCTATTC
Statistics
Matches: 43, Mismatches: 8, Indels: 5
0.77 0.14 0.09
Matches are distributed among these distances:
22 12 0.28
23 27 0.63
24 4 0.09
ACGTcount: A:0.61, C:0.07, G:0.03, T:0.30
Consensus pattern (22 bp):
TTAAAAAAATTACATTAACAAA
Found at i:1045810 original size:114 final size:111
Alignment explanation
Indices: 1045607--1045810 Score: 302
Period size: 114 Copynumber: 1.8 Consensus size: 111
1045597 TTAAAAAAGG
*
1045607 TTTATTATTATTATTTTTAATAAAATTAAAAATAATATTTAATTAAGTTTAAAAAAATTACATTA
1 TTTATTATTATTATTTTTAATAAAATAAAAAATAATATTTAATTAAGTTTAAAAAAATTACATTA
* * *
1045672 ACAAATTAAAATATTAATTATTAAGTTTTTATAAAAATAAAAAGTA
66 ACAAATTAAAAAAATAAATATTAAGTTTTTATAAAAATAAAAAGTA
* * *
1045718 TTTATTATTATTATTTTTTAATAAAATAAAAAAATGATATTTAATTAAATTTTAAAAAATTTACA
1 TTTATTATTATTA-TTTTTAATAAAAT-AAAAAATAATATTTAATT-AAGTTTAAAAAAATTACA
1045783 TTAACAAATTAAAAAAATAACAT-TTAAG
63 TTAACAAATTAAAAAAATAA-ATATTAAG
1045811 GAATTAAAAA
Statistics
Matches: 82, Mismatches: 7, Indels: 5
0.87 0.07 0.05
Matches are distributed among these distances:
111 13 0.16
112 13 0.16
113 16 0.20
114 39 0.48
115 1 0.01
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.43
Consensus pattern (111 bp):
TTTATTATTATTATTTTTAATAAAATAAAAAATAATATTTAATTAAGTTTAAAAAAATTACATTA
ACAAATTAAAAAAATAAATATTAAGTTTTTATAAAAATAAAAAGTA
Found at i:1046317 original size:124 final size:124
Alignment explanation
Indices: 1046080--1046437 Score: 482
Period size: 122 Copynumber: 2.9 Consensus size: 124
1046070 AAAAATATTC
* *
1046080 TTATAATAAAAACTTTTTTTAATTTAAAA-TTTTTATTTTA-AAAAACATAATAATTAATAATTT
1 TTATAATAAAAACCTTTTTT-ATTTAAAATTTTTTATTTTATAAAAACATAATAATTAATATTTT
* * *** *
1046143 ATTTTTTTACCCTAAATTTTTTAAACTTAATTAAATATTATTTTTTATTTTATT-AAAAA
65 AATTTGTTAATATAAATTTTTTAAACTTAATTAAATATTATTTTTAATTTTATTAAAAAA
1046202 TTATAATAAAAACCTTTTTTATTTTAAAATTTTTTATTTTGATAAAAACATAATAATTAATATTT
1 TTATAATAAAAACCTTTTTTA-TTTAAAATTTTTTATTTT-ATAAAAACATAATAATTAATATTT
*
1046267 TAATTTGTTAATGT-AATTTTTTAAACTTAATTAAATATTATTTTTAATTTTATTAAAAAA
64 TAATTTGTTAATATAAATTTTTTAAACTTAATTAAATATTATTTTTAATTTTATTAAAAAA
* *
1046327 TAATAATAATAAACCCTTTTTTATTTAAATTTTTTTA-TTT-T-AAAA-A-AATAATTAATATTT
1 TTATAATAA-AAA-CCTTTTTTATTTAAAATTTTTTATTTTATAAAAACATAATAATTAATATTT
* *
1046387 TAATTTGTTAGTATAAATTTTTTTAAAGTTAATTAAATATTATTTTTAATT
64 TAATTTGTTAATATAAA-TTTTTTAAACTTAATTAAATATTATTTTTAATT
1046438 AAAAATAGTA
Statistics
Matches: 214, Mismatches: 13, Indels: 18
0.87 0.05 0.07
Matches are distributed among these distances:
120 26 0.12
121 4 0.02
122 62 0.29
123 11 0.05
124 40 0.19
125 46 0.21
126 16 0.07
127 9 0.04
ACGTcount: A:0.42, C:0.04, G:0.02, T:0.53
Consensus pattern (124 bp):
TTATAATAAAAACCTTTTTTATTTAAAATTTTTTATTTTATAAAAACATAATAATTAATATTTTA
ATTTGTTAATATAAATTTTTTAAACTTAATTAAATATTATTTTTAATTTTATTAAAAAA
Found at i:1047042 original size:91 final size:91
Alignment explanation
Indices: 1046888--1047694 Score: 1067
Period size: 91 Copynumber: 8.9 Consensus size: 91
1046878 TAATGTATAA
** * *
1046888 ATTGTAAATGTCAGACTATAA-AAATAGACTAATGCATGAATTATATCTGAGAATCGGATTCTTT
1 ATTGTAAATGTCAGACTGCAAGGATTAGACTAATGCATGAATTATATCTGAGAATC-GATTCTTT
*
1046952 TTTATAG-AAAAAAGAAAAGTTAATTG
65 TTTATAGAAAAAAAGAAAAGTTGATTG
1046978 ATTGTAAATGTCAGACTGCAAGGATTAGACTAATGCATGAATTATATCTGAGAATCAGATTCTTT
1 ATTGTAAATGTCAGACTGCAAGGATTAGACTAATGCATGAATTATATCTGAGAATC-GATTCTTT
* *
1047043 TTTATTGAAAAAAAGAAAAATTGATTG
65 TTTATAGAAAAAAAGAAAAGTTGATTG
* * * **
1047070 ATTGCAAATGTGAGAATGCAAGGATTAGACTAATGCATGAATTATATCTGAGAATTAATTCTTTT
1 ATTGTAAATGTCAGACTGCAAGGATTAGACTAATGCATGAATTATATCTGAGAATCGATTCTTTT
1047135 TTATAGAAAAAAAAAGAAAAGTTGATTG
66 TTATAG--AAAAAAAGAAAAGTTGATTG
* * * * *
1047163 ATTGTAAATGTCAGACTGCATGGATTAAACTAATGCATGAATTATATTTAAGAATCGAAT-TTTT
1 ATTGTAAATGTCAGACTGCAAGGATTAGACTAATGCATGAATTATATCTGAGAATCGATTCTTTT
* *
1047227 TTATGGAAAAAAAGAAAATTTGATTG
66 TTATAGAAAAAAAGAAAAGTTGATTG
* * * **
1047253 ATTGTAAATGTCAGACTACAAAGATTAGACTAATGCATAAATTATATCTGAGAATAAATTCTTTT
1 ATTGTAAATGTCAGACTGCAAGGATTAGACTAATGCATGAATTATATCTGAGAATCGATTCTTTT
* *
1047318 TTATTGAAAAAAAGAAAATTTGATTG
66 TTATAGAAAAAAAGAAAAGTTGATTG
* * * * * *
1047344 ATTGTAAATATCAAACTGTAAGAATTAAACTAATGCATGAATTATATCTGAGAATCGGTTCTTTT
1 ATTGTAAATGTCAGACTGCAAGGATTAGACTAATGCATGAATTATATCTGAGAATCGATTCTTTT
1047409 TTATAGAAAAAAAGAAAAGTTGATTG
66 TTATAGAAAAAAAGAAAAGTTGATTG
* * *
1047435 ATTGTAAATGTCAGACTGCAAGGATTAGACAAATGTATGAATTATATCTAAGAATCGAATT-TTT
1 ATTGTAAATGTCAGACTGCAAGGATTAGACTAATGCATGAATTATATCTGAGAATCG-ATTCTTT
* * *
1047499 TTT-T---ATAAAA-AAAA-TTGACTA
65 TTTATAGAAAAAAAGAAAAGTTGATTG
* * *
1047520 ATTGTAAATGTCAAACTGCATGGATTAGACTAATGCATGAATTATATATGAGAATCGGATTCTTT
1 ATTGTAAATGTCAGACTGCAAGGATTAGACTAATGCATGAATTATATCTGAGAATC-GATTCTTT
*
1047585 TTTATAGAAAAAAAGAAAAATTGATTG
65 TTTATAGAAAAAAAGAAAAGTTGATTG
* * *
1047612 ATTGTAAATATCAGACTGCAAGGATTAGACTAATGTATAAATTATATCTGAGAATCGGATTCTTT
1 ATTGTAAATGTCAGACTGCAAGGATTAGACTAATGCATGAATTATATCTGAGAATC-GATTCTTT
*
1047677 TTTATAGGAAAAAAGAAA
65 TTTATAGAAAAAAAGAAA
1047695 GACTGCAAGG
Statistics
Matches: 624, Mismatches: 79, Indels: 26
0.86 0.11 0.04
Matches are distributed among these distances:
85 58 0.09
86 11 0.02
87 6 0.01
90 94 0.15
91 225 0.36
92 161 0.26
93 69 0.11
ACGTcount: A:0.42, C:0.08, G:0.16, T:0.34
Consensus pattern (91 bp):
ATTGTAAATGTCAGACTGCAAGGATTAGACTAATGCATGAATTATATCTGAGAATCGATTCTTTT
TTATAGAAAAAAAGAAAAGTTGATTG
Found at i:1047759 original size:70 final size:69
Alignment explanation
Indices: 1047624--1047763 Score: 185
Period size: 70 Copynumber: 2.0 Consensus size: 69
1047614 TGTAAATATC
* * *
1047624 AGACTGCAAGGATTAGACTAATGTATAAATTATATCTGAGAATCGGATTCTTTTTTATAGGAAAA
1 AGACTGCAAGGATTAGACTAATGCATAAATTATATCTGAGAATCGGATTCTTTTGT-TAGAAAAA
1047689 AAGAA
65 AAGAA
* * *
1047694 AGACTGCAAGGATTAGATTAATGCATAAATTGTA-CATGAGAATCGGATTTCTTTTGGTA-AAAA
1 AGACTGCAAGGATTAGACTAATGCATAAATTATATC-TGAGAATCGGA-TTCTTTTGTTAGAAAA
1047757 AAAGAA
64 AAAGAA
1047763 A
1 A
1047764 AGTTGGTTGA
Statistics
Matches: 62, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
69 11 0.18
70 44 0.71
71 7 0.11
ACGTcount: A:0.42, C:0.09, G:0.19, T:0.30
Consensus pattern (69 bp):
AGACTGCAAGGATTAGACTAATGCATAAATTATATCTGAGAATCGGATTCTTTTGTTAGAAAAAA
AGAA
Found at i:1047828 original size:161 final size:160
Alignment explanation
Indices: 1047534--1047848 Score: 411
Period size: 161 Copynumber: 2.0 Consensus size: 160
1047524 TAAATGTCAA
* * * *
1047534 ACTGCATGGATTAGACTAATGCATGAATTATATATGAGAATCGGATTCTTTTTTATAGAAAAAAA
1 ACTGCAAGGATTAGACTAATGCATAAATTATACATGAGAATCGGATTCTTTTTGATAGAAAAAAA
* * *
1047599 GAAAAATTGATTGATTGTAAATATCAGACTGCAAGGATTAGACTAATGTATAAATTATATCTGAG
66 GAAAAATTGATTGATTATAAATATCAGACTGCAAAGATTAGACTAATGCATAAATTATATCTGAG
*
1047664 AATCGGATTCTTTTTTATAGGAAAAAAGAAAG
131 AATCAGATT-TTTTTTATA-GAAAAAAGAAAG
* * *
1047696 ACTGCAAGGATTAGATTAATGCATAAATTGTACATGAGAATCGGATT-TCTTTTGGTA-AAAAAA
1 ACTGCAAGGATTAGACTAATGCATAAATTATACATGAGAATCGGATTCT-TTTTGATAGAAAAAA
* * * * * * *
1047759 AGAAAAGTTGGTTGATTATAAGTATGATATTGCAAAGATTAGGCTAATGCATAAATTATAGT-TG
65 AGAAAAATTGATTGATTATAAATATCAGACTGCAAAGATTAGACTAATGCATAAATTATA-TCTG
1047823 AGAATCAGATTTTTTTTATAGAAAAA
129 AGAATCAGATTTTTTTTATAGAAAAA
1047849 CTGAAAAGTT
Statistics
Matches: 133, Mismatches: 18, Indels: 7
0.84 0.11 0.04
Matches are distributed among these distances:
159 6 0.05
160 9 0.07
161 69 0.52
162 49 0.37
ACGTcount: A:0.41, C:0.07, G:0.18, T:0.33
Consensus pattern (160 bp):
ACTGCAAGGATTAGACTAATGCATAAATTATACATGAGAATCGGATTCTTTTTGATAGAAAAAAA
GAAAAATTGATTGATTATAAATATCAGACTGCAAAGATTAGACTAATGCATAAATTATATCTGAG
AATCAGATTTTTTTTATAGAAAAAAGAAAG
Found at i:1047855 original size:91 final size:91
Alignment explanation
Indices: 1047698--1047866 Score: 214
Period size: 91 Copynumber: 1.9 Consensus size: 91
1047688 AAAGAAAGAC
* * * * *
1047698 TGCAAGGATTAGATTAATGCATAAATTGTACATGAGAATCGGATTTCTTTTGGTAAAAAAAAGAA
1 TGCAAAGATTAGACTAATGCATAAATTATACATGAGAATCAGATTTCTTTTGATAAAAAAAAGAA
*
1047763 AAGTTGGTTGATTATAAGTATGATAT
66 AAGTTGATTGATTATAAGTATGATAT
* ** * **
1047789 TGCAAAGATTAGGCTAATGCATAAATTATAGTTGAGAATCAGATTT-TTTTTATAGAAAAACTGA
1 TGCAAAGATTAGACTAATGCATAAATTATACATGAGAATCAGATTTCTTTTGATA-AAAAAAAGA
1047853 AAAGTTGATTGATT
65 AAAGTTGATTGATT
1047867 GTAAATATCA
Statistics
Matches: 65, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
90 6 0.09
91 59 0.91
ACGTcount: A:0.40, C:0.06, G:0.20, T:0.35
Consensus pattern (91 bp):
TGCAAAGATTAGACTAATGCATAAATTATACATGAGAATCAGATTTCTTTTGATAAAAAAAAGAA
AAGTTGATTGATTATAAGTATGATAT
Found at i:1051822 original size:297 final size:293
Alignment explanation
Indices: 1051213--1051864 Score: 1033
Period size: 297 Copynumber: 2.2 Consensus size: 293
1051203 GTTAGGAAAT
* *
1051213 TTTTTTCTTGGTCATTTTACATATAAAGGAAAGCTCGTATTTAAGTCATTACTGAAAAATGAAAT
1 TTTTTTCTTGGTCATTTTACAGATAAAGGAAAGCTCGTATTTAAGTCATTAC-GAAAAATAAAAT
* ** * *
1051278 GTATGCATTTGTAAATCCAAAATAAGTCATTATCGAAAAAAAGTAATTTATTGTTGGTTAACATA
65 GTATGCATCTGTAAATCCAAAATAAGTCATTATCGAAAAAAAGTAAAATATTATTGGCTAACATA
1051343 AATTTTAAGTTCTATCAATTATAAAAATAATACATGTACAATATTAATTTTAAAAAATAAATTTG
130 AATTTTAAGTTCTATCAATTATAAAAATAATACATGTACAATATTAATTTTAAAAAATAAATTTG
*
1051408 TATAATTTATAAATAAATTAAAAATAATTTATAAATAAAAAGTAATAATTCATGCACAAAATTAA
195 TATAATTTATAAATAAATTAAAAATAATTTATAAATAAAAAGTAATAATACATGCACAAAATTAA
1051473 TCAATTTTAATAAAAATAATACATGTACAATAAA
260 TCAATTTTAATAAAAATAATACATGTACAATAAA
* * *
1051507 ATTTTT-TGGGTCATTTTACAGATAAAGGAAAGCTCGTATTTAAGTCGTTATCGAAAAATAAAAT
1 TTTTTTCTTGGTCATTTTACAGATAAAGGAAAGCTCGTATTTAAGTCATTA-CGAAAAATAAAAT
* *
1051571 GTATGCGTCTGTAAATCCAAAATAAGTCGTTATCG-AAAAAAGTAAAATATTATTGGCTAACATA
65 GTATGCATCTGTAAATCCAAAATAAGTCATTATCGAAAAAAAGTAAAATATTATTGGCTAACATA
1051635 AA-TTTAAGTTCTATCAATTATAAAAATAATACATGTACAATATTAATTAGTTTTAATAAAAATA
130 AATTTTAAGTTCTATCAATTATAAAAATAATACATGTACAATATT-A--A-TTTT-A-AAAAATA
*
1051699 AATTTGTATAATTTATAAATAAATTAAAAATAATTTATAAATAAAAAGTAATAATACA-GTACAA
189 AATTTGTATAATTTATAAATAAATTAAAAATAATTTATAAATAAAAAGTAATAATACATGCACAA
* *
1051763 TATTAATTAATTTTAATAAAAATAATACATGTACAATAAA
254 AATTAATCAATTTTAATAAAAATAATACATGTACAATAAA
* *
1051803 TTTTTTCTTGGTCATTTTACAGATAAAGAAAAACTCGTATTTAAGTCATTACCGAAAAATAA
1 TTTTTTCTTGGTCATTTTACAGATAAAGGAAAGCTCGTATTTAAGTCATTA-CGAAAAATAA
1051865 TACATGTAAA
Statistics
Matches: 328, Mismatches: 22, Indels: 13
0.90 0.06 0.04
Matches are distributed among these distances:
291 42 0.13
292 28 0.09
293 84 0.26
294 7 0.02
295 4 0.01
296 49 0.15
297 114 0.35
ACGTcount: A:0.47, C:0.08, G:0.09, T:0.36
Consensus pattern (293 bp):
TTTTTTCTTGGTCATTTTACAGATAAAGGAAAGCTCGTATTTAAGTCATTACGAAAAATAAAATG
TATGCATCTGTAAATCCAAAATAAGTCATTATCGAAAAAAAGTAAAATATTATTGGCTAACATAA
ATTTTAAGTTCTATCAATTATAAAAATAATACATGTACAATATTAATTTTAAAAAATAAATTTGT
ATAATTTATAAATAAATTAAAAATAATTTATAAATAAAAAGTAATAATACATGCACAAAATTAAT
CAATTTTAATAAAAATAATACATGTACAATAAA
Found at i:1052044 original size:19 final size:18
Alignment explanation
Indices: 1052018--1052055 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
1052008 TTAATATATT
*
1052018 ATTTATTAATTTTTTTAA
1 ATTTATTAATTTTATTAA
1052036 ATTTAATTAATTTTATTAA
1 ATTT-ATTAATTTTATTAA
1052055 A
1 A
1052056 AATAATAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (18 bp):
ATTTATTAATTTTATTAA
Found at i:1052061 original size:19 final size:19
Alignment explanation
Indices: 1052022--1052061 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
1052012 TATATTATTT
* **
1052022 ATTAATTTTTTTAAATTTA
1 ATTAATTTTATTAAAAATA
1052041 ATTAATTTTATTAAAAATA
1 ATTAATTTTATTAAAAATA
1052060 AT
1 AT
1052062 AATAATAAAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
ATTAATTTTATTAAAAATA
Found at i:1052146 original size:66 final size:66
Alignment explanation
Indices: 1052075--1052221 Score: 161
Period size: 70 Copynumber: 2.2 Consensus size: 66
1052065 AATAAACCCT
* * * *
1052075 TTTAATTTAATTTTTTATTTTAAAAAAATAATTAATATTTTAATTTATTAATGTAAATTTTTTAA
1 TTTAATTT-A-TTTTTATTATAAAATAATAATTAATATATT-A-TTATTAAT-TAAATTTTTAAA
1052140 AGTTAA
61 AGTTAA
* * * *
1052146 TTAAATATTATTTTTATTATAAAATTATAATTAATATATTATTATTTATTAAATTTTTAAAATTT
1 TTTAAT-TTATTTTTATTATAAAATAATAATTAATATATTATTATTAATTAAATTTTTAAAAGTT
1052211 AA
65 AA
1052213 -TTAATTTAT
1 TTTAATTTAT
1052222 AAAAAAAATT
Statistics
Matches: 66, Mismatches: 9, Indels: 8
0.80 0.11 0.10
Matches are distributed among these distances:
65 4 0.06
66 4 0.06
67 16 0.24
68 7 0.11
69 1 0.02
70 26 0.39
71 6 0.09
72 2 0.03
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.56
Consensus pattern (66 bp):
TTTAATTTATTTTTATTATAAAATAATAATTAATATATTATTATTAATTAAATTTTTAAAAGTTA
A
Found at i:1052176 original size:70 final size:67
Alignment explanation
Indices: 1052086--1052216 Score: 172
Period size: 70 Copynumber: 1.9 Consensus size: 67
1052076 TTAATTTAAT
* * *
1052086 TTTTTATTTTAAAAAAATAATTAATATTTTAATTTATTAATGTAAATTTTTTAAAGTTAATTAAA
1 TTTTTATTATAAAAAAATAATTAATATATT-A-TTATTAAT-TAAATTTTTAAAAGTTAATTAAA
1052151 TATTA
63 TATTA
** * *
1052156 TTTTTATTATAAAATTATAATTAATATATTATTATTTATTAAATTTTTAAAATTTAATTAA
1 TTTTTATTATAAAAAAATAATTAATATATTATTATTAATTAAATTTTTAAAAGTTAATTAA
1052217 TTTATAAAAA
Statistics
Matches: 54, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
67 20 0.37
68 7 0.13
69 1 0.02
70 26 0.48
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (67 bp):
TTTTTATTATAAAAAAATAATTAATATATTATTATTAATTAAATTTTTAAAAGTTAATTAAATAT
TA
Found at i:1052363 original size:14 final size:14
Alignment explanation
Indices: 1052344--1052384 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 14
1052334 GTATTCGTAA
1052344 AAAAAAATTATTTT
1 AAAAAAATTATTTT
1052358 -AAAAAA-TATTTT
1 AAAAAAATTATTTT
1052370 ATAAAAAATTTATTT
1 A-AAAAAA-TTATTT
1052385 ACGAAATTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
12 6 0.26
13 6 0.26
14 6 0.26
16 5 0.22
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (14 bp):
AAAAAAATTATTTT
Found at i:1052682 original size:16 final size:16
Alignment explanation
Indices: 1052661--1052704 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
1052651 TAATTTTTAA
**
1052661 TTATATAATATATTTT
1 TTATATAATATATAAT
*
1052677 TTATATATTATATAAT
1 TTATATAATATATAAT
1052693 TTATATAATATA
1 TTATATAATATA
1052705 AAAATTAATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (16 bp):
TTATATAATATATAAT
Found at i:1053152 original size:23 final size:23
Alignment explanation
Indices: 1053130--1053173 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
1053120 TTTGAATTTA
*
1053130 ATTTAATT-TATAAATATTTTTT
1 ATTTAATTAAATAAATATTTTTT
*
1053152 ATTTAATTAAATATATATTTTT
1 ATTTAATTAAATAAATATTTTT
1053174 ATTAAATATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (23 bp):
ATTTAATTAAATAAATATTTTTT
Found at i:1053155 original size:22 final size:24
Alignment explanation
Indices: 1053130--1053185 Score: 66
Period size: 22 Copynumber: 2.5 Consensus size: 24
1053120 TTTGAATTTA
1053130 ATTTAATTTATAA-ATAT-TTTTT
1 ATTTAATTTATAATATATATTTTT
1053152 ATTTAA-TTA-AATATATATTTTT
1 ATTTAATTTATAATATATATTTTT
* *
1053174 ATTAAATATATA
1 ATTTAATTTATA
1053186 TTTTATTTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
20 2 0.07
21 7 0.25
22 16 0.57
23 2 0.07
24 1 0.04
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (24 bp):
ATTTAATTTATAATATATATTTTT
Found at i:1053172 original size:21 final size:20
Alignment explanation
Indices: 1053125--1053216 Score: 77
Period size: 19 Copynumber: 4.6 Consensus size: 20
1053115 TTAAATTTGA
*
1053125 ATTTAATTTAATTTATAAATAT
1 ATTTTATTTAA-TTA-AAATAT
*
1053147 TTTTTATTTAATT-AAATAT
1 ATTTTATTTAATTAAAATAT
*
1053166 ATATT-TTT-ATTAAATATAT
1 ATTTTATTTAATTAAA-ATAT
1053185 ATTTTATTTAATATTAAAAT-T
1 ATTTTATTT-A-ATTAAAATAT
1053206 A-TTTATTTAAT
1 ATTTTATTTAAT
1053217 AATTAAAATT
Statistics
Matches: 59, Mismatches: 5, Indels: 16
0.74 0.06 0.20
Matches are distributed among these distances:
17 3 0.05
18 7 0.12
19 18 0.31
20 10 0.17
21 4 0.07
22 11 0.19
23 6 0.10
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (20 bp):
ATTTTATTTAATTAAAATAT
Found at i:1053189 original size:16 final size:16
Alignment explanation
Indices: 1053151--1053198 Score: 69
Period size: 17 Copynumber: 2.9 Consensus size: 16
1053141 AAATATTTTT
*
1053151 TATTTAATTAAATATA
1 TATTTTATTAAATATA
1053167 TATTTTTATTAAATATA
1 TA-TTTTATTAAATATA
*
1053184 TATTTTATTTAATAT
1 TATTTTATTAAATAT
1053199 TAAAATTATT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
16 14 0.48
17 15 0.52
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (16 bp):
TATTTTATTAAATATA
Found at i:1053221 original size:21 final size:20
Alignment explanation
Indices: 1053173--1053231 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 20
1053163 TATATATTTT
1053173 TATTAAATATATATTTTATTTAA
1 TATTAAA-AT-TA-TTTATTTAA
1053196 TATTAAAATTATTTATTTAA
1 TATTAAAATTATTTATTTAA
*
1053216 TAATTAAAATTTTTTA
1 T-ATTAAAATTATTTA
1053232 AAAATAATTA
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
20 10 0.29
21 15 0.44
22 2 0.06
23 7 0.21
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (20 bp):
TATTAAAATTATTTATTTAA
Found at i:1055387 original size:19 final size:18
Alignment explanation
Indices: 1055363--1055413 Score: 59
Period size: 19 Copynumber: 2.8 Consensus size: 18
1055353 AAAATTTAAC
1055363 ATATTTATATCAAATATAT
1 ATATTTATATCAAATAT-T
**
1055382 ATATTTATATTTAATATT
1 ATATTTATATCAAATATT
1055400 -TATTTATATTCAAA
1 ATATTTATA-TCAAA
1055414 CAAATATAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
17 8 0.30
18 4 0.15
19 15 0.56
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.53
Consensus pattern (18 bp):
ATATTTATATCAAATATT
Found at i:1055758 original size:40 final size:40
Alignment explanation
Indices: 1055685--1055764 Score: 101
Period size: 39 Copynumber: 2.0 Consensus size: 40
1055675 TAAAAATTAT
*
1055685 TTTAAAAAATAAAATTAATTTAAATTATTATTTAA-ATAA
1 TTTAAAAAATAAAATTAATTTAAATTATAATTTAATATAA
**
1055724 TTTAAAAAATAATTTTTAATTT-AATTATAAATTTAATATAA
1 TTTAAAAAATAA-AATTAATTTAAATTAT-AATTTAATATAA
1055765 AATTATATTT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
39 18 0.51
40 13 0.37
41 4 0.11
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (40 bp):
TTTAAAAAATAAAATTAATTTAAATTATAATTTAATATAA
Found at i:1056060 original size:22 final size:19
Alignment explanation
Indices: 1056007--1056049 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
1055997 ATAATAAAAA
* *
1056007 AATATAAAATAATAATTAT
1 AATATAACATTATAATTAT
1056026 AATATAACATTATAATTAT
1 AATATAACATTATAATTAT
*
1056045 TATAT
1 AATAT
1056050 TAACTATTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (19 bp):
AATATAACATTATAATTAT
Found at i:1057318 original size:13 final size:13
Alignment explanation
Indices: 1057300--1057324 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1057290 TTAATTACAA
1057300 ATTATAAAAATAT
1 ATTATAAAAATAT
1057313 ATTATAAAAATA
1 ATTATAAAAATA
1057325 ATATATTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (13 bp):
ATTATAAAAATAT
Found at i:1057506 original size:18 final size:17
Alignment explanation
Indices: 1057480--1057516 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
1057470 AGTTATCATA
1057480 TTAAATTAAATTTAAAT
1 TTAAATTAAATTTAAAT
*
1057497 TTAAACTTAAATTTCAAT
1 TTAAA-TTAAATTTAAAT
1057515 TT
1 TT
1057517 TTGTGGACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 5 0.28
18 13 0.72
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (17 bp):
TTAAATTAAATTTAAAT
Found at i:1058305 original size:22 final size:19
Alignment explanation
Indices: 1058280--1058322 Score: 59
Period size: 22 Copynumber: 2.1 Consensus size: 19
1058270 TAAAATAATA
1058280 ATTTTATAATTATAATTATTAT
1 ATTTTATAA-TA-AATTA-TAT
1058302 ATTTTATAATAAATTATAT
1 ATTTTATAATAAATTATAT
1058321 AT
1 AT
1058323 GAACAAATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 5 0.24
20 5 0.24
21 2 0.10
22 9 0.43
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (19 bp):
ATTTTATAATAAATTATAT
Found at i:1059303 original size:17 final size:17
Alignment explanation
Indices: 1059281--1059326 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
1059271 TTATAATTTG
1059281 TTAAATATAAAAAAAAT
1 TTAAATATAAAAAAAAT
* *
1059298 TTAAAT-TAAATATATAT
1 TTAAATATAAA-AAAAAT
1059315 TTAAATA-AAAAA
1 TTAAATATAAAAA
1059327 CATACTTACA
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
16 5 0.21
17 19 0.79
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (17 bp):
TTAAATATAAAAAAAAT
Found at i:1059641 original size:11 final size:11
Alignment explanation
Indices: 1059625--1059671 Score: 58
Period size: 11 Copynumber: 4.0 Consensus size: 11
1059615 AAATACAATT
1059625 ATATAAATATA
1 ATATAAATATA
*
1059636 ATATAAATAAA
1 ATATAAATATA
1059647 ATAATTAAAATATA
1 AT-A-T-AAATATA
1059661 ATATAAATATA
1 ATATAAATATA
1059672 TTTTTTAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
11 19 0.61
12 2 0.06
13 2 0.06
14 8 0.26
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (11 bp):
ATATAAATATA
Found at i:1059657 original size:25 final size:25
Alignment explanation
Indices: 1059607--1059669 Score: 83
Period size: 25 Copynumber: 2.5 Consensus size: 25
1059597 TTTTAATCTA
* *
1059607 ATAATATTAAATACAATTATATAAAT
1 ATAATA-TAAATAAAATAATATAAAT
1059633 ATAATATAAATAAAATAAT-TAAAAT
1 ATAATATAAATAAAATAATAT-AAAT
1059658 ATAATATAAATA
1 ATAATATAAATA
1059670 TATTTTTTAA
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
24 1 0.03
25 27 0.79
26 6 0.18
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (25 bp):
ATAATATAAATAAAATAATATAAAT
Found at i:1059679 original size:25 final size:25
Alignment explanation
Indices: 1059607--1059699 Score: 80
Period size: 25 Copynumber: 3.6 Consensus size: 25
1059597 TTTTAATCTA
* *
1059607 ATAATATTAAATACAATTA-TATAAAT
1 ATAATA-TAAATATAATAATTA-AAAT
*
1059633 ATAATATAAATAAAATAATTAAAAT
1 ATAATATAAATATAATAATTAAAAT
* **
1059658 ATAATATAAATATATTTTTTAAAAT
1 ATAATATAAATATAATAATTAAAAT
*
1059683 TTATATATACAATATAA
1 ATA-ATATA-AATATAA
1059700 ATTATTAACA
Statistics
Matches: 56, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
25 37 0.66
26 13 0.23
27 6 0.11
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (25 bp):
ATAATATAAATATAATAATTAAAAT
Found at i:1059722 original size:18 final size:19
Alignment explanation
Indices: 1059676--1059725 Score: 54
Period size: 18 Copynumber: 2.7 Consensus size: 19
1059666 AATATATTTT
1059676 TTAAAATTTATATATACAA
1 TTAAAATTTATATATACAA
1059695 -TATAAA-TTAT-TA-ACATA
1 TTA-AAATTTATATATACA-A
1059712 TTAAAATTTATATA
1 TTAAAATTTATATA
1059726 AAAAAATATT
Statistics
Matches: 26, Mismatches: 0, Indels: 10
0.72 0.00 0.28
Matches are distributed among these distances:
16 3 0.12
17 6 0.23
18 12 0.46
19 5 0.19
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (19 bp):
TTAAAATTTATATATACAA
Found at i:1059775 original size:14 final size:14
Alignment explanation
Indices: 1059758--1059787 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
1059748 ATAATATAAT
1059758 AAAATAAATAAATA
1 AAAATAAATAAATA
*
1059772 AAAATAAATATATA
1 AAAATAAATAAATA
1059786 AA
1 AA
1059788 TTATCGAATC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (14 bp):
AAAATAAATAAATA
Found at i:1060438 original size:10 final size:10
Alignment explanation
Indices: 1060402--1060472 Score: 56
Period size: 10 Copynumber: 7.0 Consensus size: 10
1060392 ATAATTTTTT
1060402 ATTATAATGATA
1 ATTATAAT-A-A
* *
1060414 ATTATTATAT
1 ATTATAATAA
*
1060424 TTTATAATAA
1 ATTATAATAA
1060434 ATTAT-ATAA
1 ATTATAATAA
* *
1060443 AATA-AAAAA
1 ATTATAATAA
1060452 ATTTATAATAA
1 A-TTATAATAA
1060463 ATTATAATAA
1 ATTATAATAA
1060473 TATTTATTAT
Statistics
Matches: 46, Mismatches: 10, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
9 11 0.24
10 22 0.48
11 6 0.13
12 7 0.15
ACGTcount: A:0.56, C:0.00, G:0.01, T:0.42
Consensus pattern (10 bp):
ATTATAATAA
Found at i:1060477 original size:22 final size:21
Alignment explanation
Indices: 1060402--1060479 Score: 56
Period size: 22 Copynumber: 3.8 Consensus size: 21
1060392 ATAATTTTTT
* * *
1060402 ATTATAATGATAATTATTATAT
1 ATTATAATAATATTTA-TATAA
*
1060424 TTTATAATAA-A-TTATATAA
1 ATTATAATAATATTTATATAA
* *
1060443 A--ATAAAAAAATTTATAATAA
1 ATTATAATAATATTTAT-ATAA
1060463 ATTATAATAATATTTAT
1 ATTATAATAATATTTAT
1060480 TATATTTTCA
Statistics
Matches: 44, Mismatches: 7, Indels: 10
0.72 0.11 0.16
Matches are distributed among these distances:
17 6 0.14
18 1 0.02
19 8 0.18
20 8 0.18
21 1 0.02
22 20 0.45
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.45
Consensus pattern (21 bp):
ATTATAATAATATTTATATAA
Found at i:1064077 original size:46 final size:45
Alignment explanation
Indices: 1064009--1064145 Score: 134
Period size: 46 Copynumber: 3.0 Consensus size: 45
1063999 ATAATTGGTT
* * *
1064009 ATTTTATTTCTAATTAAGTTAAATTATTAAGAAATAAATGAAAAAA
1 ATTTTATCTCTAATGAAATTAAATTATTAAGAAATAAAT-AAAAAA
* * **
1064055 ATCTTT-TCTTTAATGAAATTAAATTAACTAA-AATATAAATAAAGTA
1 AT-TTTATCTCTAATGAAATTAAATT-ATTAAGAA-ATAAATAAAAAA
* *
1064101 ATTTTATCTCTAATTAAATTAAATTTATTAAGAGATAAATAAAAA
1 ATTTTATCTCTAATGAAATTAAA-TTATTAAGAAATAAATAAAAA
1064146 GTTAAATTCT
Statistics
Matches: 72, Mismatches: 13, Indels: 12
0.74 0.13 0.12
Matches are distributed among these distances:
45 3 0.04
46 53 0.74
47 16 0.22
ACGTcount: A:0.51, C:0.04, G:0.05, T:0.39
Consensus pattern (45 bp):
ATTTTATCTCTAATGAAATTAAATTATTAAGAAATAAATAAAAAA
Found at i:1066779 original size:53 final size:53
Alignment explanation
Indices: 1066673--1066815 Score: 210
Period size: 53 Copynumber: 2.8 Consensus size: 53
1066663 TCTTTTGTTA
**
1066673 AATTAAATT-AATTAATTAAGAGATAAAT-AA-AA---AA-AATCTTATCTCT
1 AATTAAATTAAATTAATTAAGAGATAAATGAATAATTTAATTCTCTTATCTCT
*
1066719 AATTAAATTAAATTAATTAAGAGATAAATGAATAGTTTAATTCTCTTATCTCT
1 AATTAAATTAAATTAATTAAGAGATAAATGAATAATTTAATTCTCTTATCTCT
1066772 AATTAAATTAAATTAATTAAGAGATAAATGAATAATTTAATTCT
1 AATTAAATTAAATTAATTAAGAGATAAATGAATAATTTAATTCT
1066816 TTTCGAACTC
Statistics
Matches: 86, Mismatches: 4, Indels: 7
0.89 0.04 0.07
Matches are distributed among these distances:
46 9 0.10
47 19 0.22
48 2 0.02
49 1 0.01
52 2 0.02
53 53 0.62
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.38
Consensus pattern (53 bp):
AATTAAATTAAATTAATTAAGAGATAAATGAATAATTTAATTCTCTTATCTCT
Found at i:1072254 original size:79 final size:79
Alignment explanation
Indices: 1072146--1072408 Score: 259
Period size: 79 Copynumber: 3.3 Consensus size: 79
1072136 TCATTCATGT
* ** * *
1072146 TTTTATTTCTAAAACATCGATTTTCCACCATTGGAGATGCTCCAACCCTGTTATTTCT-AAGGGG
1 TTTTATTTCTAAAACATCAATTTTCCACCATCAGAGATACTCCAACCCTGTTATTTCTGAA-GAG
* *
1072210 ATAGTCAAACTCCGA
65 ATACTCAAACCCCGA
*
1072225 TTTTATTTCTAAAACATCAATTTTTCACCATCAGAGATACTCCAACCCTGTTATTTCTGAAGAGA
1 TTTTATTTCTAAAACATCAATTTTCCACCATCAGAGATACTCCAACCCTGTTATTTCTGAAGAGA
* *
1072290 TACTCTAACCCCGG
66 TACTCAAACCCCGA
* * * * * *
1072304 TTTTATTTCTAGAACA-CTGATTTTCCACAATC-GTGGATACTCTAACCTTGTTATTT-TCGAAG
1 TTTTATTTCTAAAACATC-AATTTTCCACCATCAG-AGATACTCCAACCCTGTTATTTCT-GAAG
* * *
1072366 GGATACTCTAACCTCGA
63 AGATACTCAAACCCCGA
1072383 TTTTATTT-TCAAAACA-CTAATTTTCC
1 TTTTATTTCT-AAAACATC-AATTTTCC
1072409 CTAATTGGCG
Statistics
Matches: 157, Mismatches: 22, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
78 4 0.03
79 151 0.96
80 2 0.01
ACGTcount: A:0.29, C:0.23, G:0.12, T:0.37
Consensus pattern (79 bp):
TTTTATTTCTAAAACATCAATTTTCCACCATCAGAGATACTCCAACCCTGTTATTTCTGAAGAGA
TACTCAAACCCCGA
Found at i:1072508 original size:51 final size:52
Alignment explanation
Indices: 1072448--1072545 Score: 137
Period size: 52 Copynumber: 1.9 Consensus size: 52
1072438 TCCAAAGGGA
* *
1072448 ATACTCCAA-CCCTAGTTTTATTTCCAAAACA-CTGATTTTTTACAATCAGAG
1 ATACTCCAACCCCGAGTTTTATTTCCAAAACATC-GATTTTTCACAATCAGAG
* *
1072499 ATACTCCAACCCCGATTTTTATTTCTAAAACATCGATTTTTCACAAT
1 ATACTCCAACCCCGAGTTTTATTTCCAAAACATCGATTTTTCACAAT
1072546 TGGGGATACT
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
51 9 0.22
52 31 0.76
53 1 0.02
ACGTcount: A:0.33, C:0.24, G:0.06, T:0.37
Consensus pattern (52 bp):
ATACTCCAACCCCGAGTTTTATTTCCAAAACATCGATTTTTCACAATCAGAG
Found at i:1072511 original size:80 final size:79
Alignment explanation
Indices: 1072146--1072512 Score: 253
Period size: 79 Copynumber: 4.6 Consensus size: 79
1072136 TCATTCATGT
* * * ** * * *
1072146 TTTTATTTCTAAAACA-TCGATTTTCCACCATTGGAGATGCTCCAACCCTGTTATTT-CTAAGGG
1 TTTTATTTCCAAAACACT-GATTTTTCACAATCAGAGATACTCCAACCCCGTTATTTCCGAA-GG
* * *
1072209 GATAGTCAAACTCCGA-
64 GATACTCTAAC-CCTAG
* * * * * *
1072225 TTTTATTTCTAAAACA-TCAATTTTTCACCATCAGAGATACTCCAACCCTGTTATTTCTGAAGAG
1 TTTTATTTCCAAAACACT-GATTTTTCACAATCAGAGATACTCCAACCCCGTTATTTCCGAAGGG
**
1072289 ATACTCTAACCCCGG
65 ATACTCTAACCCTAG
* * * * * ** *
1072304 TTTTATTTCTAGAACACTGATTTTCCACAATC-GTGGATACTCTAACCTTGTTATTTTCGAAGGG
1 TTTTATTTCCAAAACACTGATTTTTCACAATCAG-AGATACTCCAACCCCGTTATTTCCGAAGGG
*
1072368 ATACTCTAA-CCTCG
65 ATACTCTAACCCTAG
* * * ** * * * * *
1072382 ATTTTATTTTCAAAACACT-AATTTTCCCTAATTGGCGATAATCCTACCCCATTATTTCCAAAGG
1 -TTTTATTTCCAAAACACTGATTTTTCAC-AATCAGAGATACTCCAACCCCGTTATTTCCGAAGG
*
1072446 GAATACTCCAACCCTAG
64 G-ATACTCTAACCCTAG
*
1072463 TTTTATTTCCAAAACACTGATTTTTTACAATCAGAGATACTCCAACCCCG
1 TTTTATTTCCAAAACACTGATTTTTCACAATCAGAGATACTCCAACCCCG
1072513 ATTTTTATTT
Statistics
Matches: 226, Mismatches: 52, Indels: 19
0.76 0.18 0.06
Matches are distributed among these distances:
78 12 0.05
79 159 0.70
80 45 0.20
81 10 0.04
ACGTcount: A:0.29, C:0.24, G:0.11, T:0.35
Consensus pattern (79 bp):
TTTTATTTCCAAAACACTGATTTTTCACAATCAGAGATACTCCAACCCCGTTATTTCCGAAGGGA
TACTCTAACCCTAG
Found at i:1074155 original size:20 final size:20
Alignment explanation
Indices: 1074130--1074183 Score: 83
Period size: 20 Copynumber: 2.7 Consensus size: 20
1074120 GTTACAAGCA
*
1074130 ATGTATCGATACAAT-TCATC
1 ATGTATCGATACAATGT-ACC
1074150 ATGTATCGATACAATGTACC
1 ATGTATCGATACAATGTACC
1074170 ATGTATCGATACAA
1 ATGTATCGATACAA
1074184 ACAGTGGTAG
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 31 0.97
21 1 0.03
ACGTcount: A:0.37, C:0.19, G:0.13, T:0.31
Consensus pattern (20 bp):
ATGTATCGATACAATGTACC
Found at i:1080216 original size:13 final size:13
Alignment explanation
Indices: 1080198--1080224 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1080188 ATAGTAACCC
1080198 ATGTATCGATACA
1 ATGTATCGATACA
1080211 ATGTATCGATACA
1 ATGTATCGATACA
1080224 A
1 A
1080225 GGAATGTTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1081909 original size:19 final size:19
Alignment explanation
Indices: 1081885--1081935 Score: 102
Period size: 19 Copynumber: 2.7 Consensus size: 19
1081875 CAAACAGAAA
1081885 TTGTATCGATACATAAGTG
1 TTGTATCGATACATAAGTG
1081904 TTGTATCGATACATAAGTG
1 TTGTATCGATACATAAGTG
1081923 TTGTATCGATACA
1 TTGTATCGATACA
1081936 ATGTATCGCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.31, C:0.12, G:0.20, T:0.37
Consensus pattern (19 bp):
TTGTATCGATACATAAGTG
Found at i:1082006 original size:13 final size:13
Alignment explanation
Indices: 1081988--1082012 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1081978 ATTACTCAAA
1081988 TGTATCGATACAT
1 TGTATCGATACAT
1082001 TGTATCGATACA
1 TGTATCGATACA
1082013 CTAATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1082067 original size:52 final size:52
Alignment explanation
Indices: 1082021--1082149 Score: 213
Period size: 52 Copynumber: 2.5 Consensus size: 52
1082011 CACTAATCTT
* * *
1082021 TGTATCGATACATGCAGGCAAATTTGCCTAGATGTATCGATGCACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTACCCAGATGTATCGATACACTATGAAA
* *
1082073 TGTATTGATACATACAGGCAAATTTACCCAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTACCCAGATGTATCGATACACTATGAAA
1082125 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
1082150 TCATATTTCG
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 70 1.00
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTACCCAGATGTATCGATACACTATGAAA
Found at i:1084292 original size:24 final size:26
Alignment explanation
Indices: 1084265--1084318 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 26
1084255 TCAAAATTTT
1084265 ATTCAT-C-GGGGACACTCCAACCCC
1 ATTCATCCAGGGGACACTCCAACCCC
*
1084289 ATTCTTCCGAGGGGACACTCCAACCCC
1 ATTCATCC-AGGGGACACTCCAACCCC
1084316 ATT
1 ATT
1084319 TTCAACCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 5 0.19
25 1 0.04
27 20 0.77
ACGTcount: A:0.24, C:0.39, G:0.17, T:0.20
Consensus pattern (26 bp):
ATTCATCCAGGGGACACTCCAACCCC
Found at i:1089083 original size:21 final size:21
Alignment explanation
Indices: 1089059--1089108 Score: 64
Period size: 21 Copynumber: 2.2 Consensus size: 21
1089049 AAAAATGATG
*
1089059 AAAAAGTCAAAAACAAAACAAA
1 AAAAAG-CAAAAAAAAAACAAA
1089081 AAAAAGCAAAAAAAAAACACAGA
1 AAAAAGCAAAAAAAAAACA-A-A
1089104 AAAAA
1 AAAAA
1089109 TGTGCAAAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
21 12 0.48
22 7 0.28
23 6 0.24
ACGTcount: A:0.80, C:0.12, G:0.06, T:0.02
Consensus pattern (21 bp):
AAAAAGCAAAAAAAAAACAAA
Found at i:1090425 original size:31 final size:31
Alignment explanation
Indices: 1090390--1090546 Score: 214
Period size: 31 Copynumber: 5.1 Consensus size: 31
1090380 ATACCTTTTT
*
1090390 AAAGTCCACGACTTAGTGGCATCTTTTCTTC
1 AAAGTCCACGACTCAGTGGCATCTTTTCTTC
* *
1090421 AAAGTCCACAACTCAGTGGCAT-TTTGTC-CC
1 AAAGTCCACGACTCAGTGGCATCTTT-TCTTC
*
1090451 AAAGTCCACGACTTAGTGGCATCTTTTCTTC
1 AAAGTCCACGACTCAGTGGCATCTTTTCTTC
*
1090482 AAAGTCTACGACTCAGTGGCATCTATTTC--C
1 AAAGTCCACGACTCAGTGGCATCT-TTTCTTC
*
1090512 AAAGTCCACGACTCAGTAGCATCTTTTCTTC
1 AAAGTCCACGACTCAGTGGCATCTTTTCTTC
1090543 AAAG
1 AAAG
1090547 CCTACAACTC
Statistics
Matches: 110, Mismatches: 10, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
29 4 0.04
30 49 0.45
31 53 0.48
32 4 0.04
ACGTcount: A:0.26, C:0.27, G:0.16, T:0.31
Consensus pattern (31 bp):
AAAGTCCACGACTCAGTGGCATCTTTTCTTC
Found at i:1090485 original size:61 final size:61
Alignment explanation
Indices: 1090390--1090556 Score: 250
Period size: 61 Copynumber: 2.7 Consensus size: 61
1090380 ATACCTTTTT
1090390 AAAGTCCACGACTTAGTGGCATCTTTTCTTCAAAGTCCACAACTCAGTGGCAT-T-TTGTCCC
1 AAAGTCCACGACTTAGTGGCATCTTTTCTTCAAAGTCCACAACTCAGTGGCATCTATT-T-CC
* *
1090451 AAAGTCCACGACTTAGTGGCATCTTTTCTTCAAAGTCTACGACTCAGTGGCATCTATTTCC
1 AAAGTCCACGACTTAGTGGCATCTTTTCTTCAAAGTCCACAACTCAGTGGCATCTATTTCC
* *
1090512 AAAGTCCACGACTCAGTAGCATCTTTTCTTCAAAG-CCTACAACTC
1 AAAGTCCACGACTTAGTGGCATCTTTTCTTCAAAGTCC-ACAACTC
1090557 CGCGACACTT
Statistics
Matches: 97, Mismatches: 6, Indels: 6
0.89 0.06 0.06
Matches are distributed among these distances:
60 1 0.01
61 92 0.95
62 2 0.02
63 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.15, T:0.31
Consensus pattern (61 bp):
AAAGTCCACGACTTAGTGGCATCTTTTCTTCAAAGTCCACAACTCAGTGGCATCTATTTCC
Found at i:1090580 original size:34 final size:34
Alignment explanation
Indices: 1090540--1090892 Score: 490
Period size: 34 Copynumber: 10.4 Consensus size: 34
1090530 GCATCTTTTC
* * * *
1090540 TTCAAAGCCTACAACTCCGCGACACTTTTTTCTT
1 TTCAAAGCCCACAACTCCGTGGCACCTTTTTCTT
* *
1090574 TTCAAAGCCCACCATTCCGTGGCACCTTTTTCTT
1 TTCAAAGCCCACAACTCCGTGGCACCTTTTTCTT
*
1090608 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCTT
1 TTCAAAGCCCACAACTCCGTGGCACCTTTTTCTT
* *
1090642 TTCAAAGCCCACCACTCTGTGGCACCTTTTTCTT
1 TTCAAAGCCCACAACTCCGTGGCACCTTTTTCTT
*
1090676 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCTT
1 TTCAAAGCCCACAACTCCGTGGCACCTTTTTCTT
* *
1090710 TTCAAAGCCCACCATTCCGTGGCACCTTTTTCTT
1 TTCAAAGCCCACAACTCCGTGGCACCTTTTTCTT
* * * *
1090744 TTTAAAGCCCACAACCCCATGGCACATTTTTCTT
1 TTCAAAGCCCACAACTCCGTGGCACCTTTTTCTT
* *
1090778 TTCAAAGCCCACCACTCAGTGGCACCTTTTTCTT
1 TTCAAAGCCCACAACTCCGTGGCACCTTTTTCTT
* * *
1090812 TTTAAAGCCCACAACTCTGTGGCTCCTTTTTCTT
1 TTCAAAGCCCACAACTCCGTGGCACCTTTTTCTT
* *
1090846 TTCAAAGCCCACCACTCCATGGCACCTTTTTCTT
1 TTCAAAGCCCACAACTCCGTGGCACCTTTTTCTT
*
1090880 TTTAAAGCCCACA
1 TTCAAAGCCCACA
1090893 CAAGTTGGTG
Statistics
Matches: 278, Mismatches: 41, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 278 1.00
ACGTcount: A:0.21, C:0.34, G:0.11, T:0.35
Consensus pattern (34 bp):
TTCAAAGCCCACAACTCCGTGGCACCTTTTTCTT
Found at i:1090622 original size:68 final size:68
Alignment explanation
Indices: 1090543--1090892 Score: 574
Period size: 68 Copynumber: 5.1 Consensus size: 68
1090533 TCTTTTCTTC
* * * * *
1090543 AAAGCCTACAACTCCGCGACACTTTTTTCTTTTCAAAGCCCACCATTCCGTGGCACCTTTTTCTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACCACTCCGTGGCACCTTTTTCTT
1090608 TTT
66 TTT
*
1090611 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACCACTCTGTGGCACCTTTTTCTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACCACTCCGTGGCACCTTTTTCTT
1090676 TTT
66 TTT
*
1090679 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACCATTCCGTGGCACCTTTTTCTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACCACTCCGTGGCACCTTTTTCTT
1090744 TTT
66 TTT
* * * *
1090747 AAAGCCCACAACCCCATGGCACATTTTTCTTTTCAAAGCCCACCACTCAGTGGCACCTTTTTCTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACCACTCCGTGGCACCTTTTTCTT
1090812 TTT
66 TTT
* * *
1090815 AAAGCCCACAACTCTGTGGCTCCTTTTTCTTTTCAAAGCCCACCACTCCATGGCACCTTTTTCTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACCACTCCGTGGCACCTTTTTCTT
1090880 TTT
66 TTT
1090883 AAAGCCCACA
1 AAAGCCCACA
1090893 CAAGTTGGTG
Statistics
Matches: 262, Mismatches: 20, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
68 262 1.00
ACGTcount: A:0.21, C:0.34, G:0.11, T:0.34
Consensus pattern (68 bp):
AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACCACTCCGTGGCACCTTTTTCTT
TTT
Found at i:1090927 original size:33 final size:33
Alignment explanation
Indices: 1090882--1091012 Score: 199
Period size: 33 Copynumber: 4.0 Consensus size: 33
1090872 TTTTTCTTTT
*
1090882 TAAAGCCCACACAAGTTGGTGGCAACCATTCTC
1 TAAAGCCCACACAAGTCGGTGGCAACCATTCTC
*
1090915 TAAAGCCTACACAAGTCGGTGGCAACCATTCTC
1 TAAAGCCCACACAAGTCGGTGGCAACCATTCTC
* *
1090948 TAAAGCCCACATAAGTCGGTGGCAACCACTCTC
1 TAAAGCCCACACAAGTCGGTGGCAACCATTCTC
* * *
1090981 TAAAGCTCACACAAGTTGGTGGCAACCCTTCT
1 TAAAGCCCACACAAGTCGGTGGCAACCATTCT
1091013 AAGCCCAATA
Statistics
Matches: 88, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 88 1.00
ACGTcount: A:0.30, C:0.31, G:0.18, T:0.21
Consensus pattern (33 bp):
TAAAGCCCACACAAGTCGGTGGCAACCATTCTC
Found at i:1091082 original size:49 final size:49
Alignment explanation
Indices: 1091012--1091828 Score: 831
Period size: 49 Copynumber: 16.9 Consensus size: 49
1091002 GCAACCCTTC
* *
1091012 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
* * * * *
1091061 CAAATCCAATGTAGCTAGCCTTGAATCAGCACATTGGCACCTTTA----
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
* *
1091106 T--GTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
* * * *
1091153 TAAATCCAATGTAGCTGGCCTTGAATCAGCACATTAGCA-C-----CTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
* * *
1091196 TAAGTCCAATATAGCTGGCCTTGAATCAACATATTGGCACCTTTATCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
* * *
1091245 TAAATCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C-----CTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
*
1091288 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC-TTATCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
* *
1091336 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC--T-TC--
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
* * * * * * *
1091380 -AAGCCCAATATCGTTGGCCGTGAATCAGCATATTGGCATCTTCACCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
*
1091428 TAACTCCAATAGT-GCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTT
1 TAAGTCCAAT-GTCGCTGGCCTTGAATCAGCATATTGGCACC-TTT--ATCTT
* * * *
1091480 TAAGTCCAATGTCGTTGGCCTTGAATCAACACATTGGCACCTTCATCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
* * * *
1091529 TAAGCCCAATGTCGCTGGCCTTAAATCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
* *
1091578 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACC-TT-T-ATCTT
* * *
1091630 TAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
* *
1091679 TAAGTCCAATATCGCTGGTCTTGAATCAGCATATTGGCACCTTTGTCATCTTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACC-TT-T-ATC-TT
* *
1091732 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTCTCATCTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACC-TT-T-ATCTT
* * ** * * *
1091784 CAAGTCTAATGTCGCTAACCGTGAATCAGCACATTGACATCCTTT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCA-CCTTT
1091829 TTCTCATCTT
Statistics
Matches: 646, Mismatches: 86, Indels: 70
0.81 0.11 0.09
Matches are distributed among these distances:
43 146 0.23
44 2 0.00
46 3 0.00
47 2 0.00
48 43 0.07
49 268 0.41
50 7 0.01
51 7 0.01
52 117 0.18
53 51 0.08
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.32
Consensus pattern (49 bp):
TAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
Found at i:1091174 original size:92 final size:92
Alignment explanation
Indices: 1091007--1091775 Score: 930
Period size: 92 Copynumber: 8.1 Consensus size: 92
1090997 TGGTGGCAAC
* * *
1091007 CCTTCTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTCAAATCCAATG
1 CCTT-TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATG
*
1091072 TAGCTAGCCTTGAATCAGCACATTGGCA
65 TAGCTGGCCTTGAATCAGCACATTGGCA
* * *
1091100 CCTTTATGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAATCCAATGT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGT
*
1091165 AGCTGGCCTTGAATCAGCACATTAGCA
66 AGCTGGCCTTGAATCAGCACATTGGCA
* * *
1091192 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAACATATTGGCACCTTTATCTTTAAATCCAATGT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGT
1091257 AGCTGGCCTTGAATCAGCACATTGGCA
66 AGCTGGCCTTGAATCAGCACATTGGCA
1091284 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC-TTATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGT
1091348 AGCTGGCCTTGAATCAGCACATTGGCA
66 AGCTGGCCTTGAATCAGCACATTGGCA
* * * * * * * *
1091375 CCTTCAAGCCCAATATCGTTGGCCGTGAATCAGCATATTGGCATCTTCACCTTTAACTCCAATAG
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAAT-G
*
1091440 T-GCTGGCCTTGAATCAGCATATTGGCA
65 TAGCTGGCCTTGAATCAGCACATTGGCA
* * * * *
1091467 CCTTTTCCATCTTTAAGTCCAATGTCGTTGGCCTTGAATCAACACATTGGCACCTTCATCTTTAA
1 -------C--CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAA
* * *
1091532 GCCCAATGTCGCTGGCCTTAAATCAGCACATTGGCA
57 GTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
*
1091568 CCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAA
1 ----C--CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC-TT-T-ATCTTTAA
* *
1091633 GTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCA
57 GTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
*
1091669 CCTTCATCTTTAAGTCCAATATCGCTGGTCTTGAATCAGCATATTGGCACCTTTGTCATCTTTTA
1 ----C--CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC-TT-T-ATC-TTTA
* * * *
1091734 AGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCG
56 AGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
1091771 CCTTT
1 CCTTT
1091776 CTCATCTTCA
Statistics
Matches: 609, Mismatches: 51, Indels: 29
0.88 0.07 0.04
Matches are distributed among these distances:
91 85 0.14
92 253 0.42
93 6 0.01
96 4 0.01
98 44 0.07
99 3 0.00
100 2 0.00
101 175 0.29
102 37 0.06
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.32
Consensus pattern (92 bp):
CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGT
AGCTGGCCTTGAATCAGCACATTGGCA
Found at i:1091559 original size:101 final size:100
Alignment explanation
Indices: 1091012--1091866 Score: 843
Period size: 92 Copynumber: 8.8 Consensus size: 100
1091002 GCAACCCTTC
* * ** *
1091012 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-T-ATCTTCAAATCCAATGTAG
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCATCTTTAAGCCCAATGTCG
*
1091075 CTAGCCTTGAATCAGCACATTGGCA----C--CTT
66 CTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * ** *
1091104 TATGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTT-T-ATCTTTAAATCCAATGTAG
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCATCTTTAAGCCCAATGTCG
*
1091167 CTGGCCTTGAATCAGCACATTAGCA----C--CTT
66 CTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * ** *
1091196 TAAGTCCAATATAGCTGGCCTTGAATCAACATATTGGCACCTT-T-ATCTTTAAATCCAATGTAG
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCATCTTTAAGCCCAATGTCG
1091259 CTGGCCTTGAATCAGCACATTGGCA----C--CTT
66 CTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* *
1091288 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC-T-T-ATCTTTAAGTCCAATGTAG
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCATCTTTAAGCCCAATGTCG
1091350 CTGGCCTTGAATCAGCACATTGGCACC-T--TC--
66 CTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * * *
1091380 -AAGCCCAATATCGTTGGCCGTGAATCAGCATATTGGCATC-T-TCACCTTTAA-CTCCAATAGT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCATCTTTAAGC-CCAAT-GT
*
1091441 -GCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTT
64 CGCTGGCCTTGAATCAGCACATTGGCACC--TT-CATCTT
* * * *
1091480 TAAGTCCAATGTCGTTGGCCTTGAATCAACACATTGGCACC-T-TCATCTTTAAGCCCAATGTCG
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCATCTTTAAGCCCAATGTCG
*
1091543 CTGGCCTTAAATCAGCACATTGGCACCTTCATCTT
66 CTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* *
1091578 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATGTC
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC-TTGTCATCTTTAAGCCCAATGTC
*
1091643 GTTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
65 GCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
1091679 TAAGTCCAATATCGCTGGTCTTGAATCAGCATATTGGCACCTTTGTCATCTTTTAAGTCCAATAT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC-TTGTCATC-TTTAAGCCCAATGT
* *
1091744 CGCTGGCCTTGAATCAGCATATTGGCGCCTTTCTCATCTT
64 CGCTGGCCTTGAATCAGCACATTGGCACC--T-TCATCTT
* * * ** * * * * *
1091784 CAAGTCTAATGTCGCTAACCGTGAATCAGCACATTGACATCCTTTTTCTCATCTTTAAACCCAAT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA-CC---TTGTCATCTTTAAGCCCAAT
* * *
1091849 ATCGTTGGCCGTGAATCA
62 GTCGCTGGCCTTGAATCA
1091867 ACGTATTGGT
Statistics
Matches: 679, Mismatches: 56, Indels: 41
0.88 0.07 0.05
Matches are distributed among these distances:
91 83 0.12
92 253 0.37
93 2 0.00
94 1 0.00
95 1 0.00
98 44 0.06
99 2 0.00
100 3 0.00
101 176 0.26
102 40 0.06
104 1 0.00
105 37 0.05
106 2 0.00
107 26 0.04
108 8 0.01
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.32
Consensus pattern (100 bp):
TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCATCTTTAAGCCCAATGTCG
CTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
Found at i:1091596 original size:150 final size:148
Alignment explanation
Indices: 1091012--1091866 Score: 886
Period size: 150 Copynumber: 5.9 Consensus size: 148
1091002 GCAACCCTTC
* * * *
1091012 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTT-ATCTTCAAATCCAATGTAGC
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTCATCTTTAAGTCCAATGTCGC
* * * * *
1091076 TAGCCTTGAATCAGCACATTGGCA----C--CTTTATGTCCAATATAGCTGGCCTTGAATCAGCA
66 TGGCCTTGAATCAACACATTGGCACCTTCATCTTTAAGCCCAATATCGCTGGCCTTGAATCAGCA
* *
1091135 TATTGGCACCTTTATCTT
131 CATTGGCACCTTCATCTT
* * * * * * *
1091153 TAAATCCAATGTAGCTGGCCTTGAATCAGCACATTAGCA-----C--CTTTAAGTCCAATATAGC
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTCATCTTTAAGTCCAATGTCGC
* * ** * *
1091211 TGGCCTTGAATCAACATATTGGCACCTTTATCTTTAAATCCAATGTAGCTGGCCTTGAATCAGCA
66 TGGCCTTGAATCAACACATTGGCACCTTCATCTTTAAGCCCAATATCGCTGGCCTTGAATCAGCA
1091276 CATTGGCA----C--CTT
131 CATTGGCACCTTCATCTT
*
1091288 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC-TT-ATCTTTAAGTCCAATGTAGC
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTCATCTTTAAGTCCAATGTCGC
* * *
1091351 TGGCCTTGAATCAGCACATTGGCACC-T--TC---AAGCCCAATATCGTTGGCCGTGAATCAGCA
66 TGGCCTTGAATCAACACATTGGCACCTTCATCTTTAAGCCCAATATCGCTGGCCTTGAATCAGCA
* * *
1091410 TATTGGCATCTTCACCTT
131 CATTGGCACCTTCATCTT
*
1091428 TAACTCCAATAGT-GCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCCAATGT
1 TAAGTCCAATA-TCGCTGGCCTTGAATCAGCATATTGGCACC-TTT-CATCTTTAAGTCCAATGT
* * *
1091492 CGTTGGCCTTGAATCAACACATTGGCACCTTCATCTTTAAGCCCAATGTCGCTGGCCTTAAATCA
63 CGCTGGCCTTGAATCAACACATTGGCACCTTCATCTTTAAGCCCAATATCGCTGGCCTTGAATCA
1091557 GCACATTGGCACCTTCATCTT
128 GCACATTGGCACCTTCATCTT
*
1091578 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATGTC
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC-TT-TCATCTTTAAGTCCAATGTC
* * * *
1091643 GTTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGTCTTGAATCAG
64 GCTGGCCTTGAATCAACACATTGGCACCTTCATCTTTAAGCCCAATATCGCTGGCCTTGAATCAG
*
1091708 CATATTGGCACCTTTGTCATCTTT
129 CACATTGGCACC--T-TCATC-TT
* * *
1091732 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTCTCATCTTCAAGTCTAATGTC
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC-TT-TCATCTTTAAGTCCAATGTC
** * * * * * *
1091797 GCTAACCGTGAATCAGCACATTGACATCCTTTTTCTCATCTTTAAACCCAATATCGTTGGCCGTG
64 GCTGGCCTTGAATCAACACATTGGCA-CC----T-TCATCTTTAAGCCCAATATCGCTGGCCTTG
1091862 AATCA
123 AATCA
1091867 ACGTATTGGT
Statistics
Matches: 607, Mismatches: 65, Indels: 65
0.82 0.09 0.09
Matches are distributed among these distances:
134 31 0.05
135 73 0.12
137 2 0.00
138 1 0.00
139 1 0.00
140 82 0.14
141 72 0.12
142 2 0.00
144 43 0.07
145 1 0.00
147 2 0.00
149 1 0.00
150 171 0.28
151 1 0.00
152 1 0.00
153 5 0.01
154 85 0.14
155 2 0.00
159 1 0.00
160 30 0.05
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.32
Consensus pattern (148 bp):
TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTCATCTTTAAGTCCAATGTCGC
TGGCCTTGAATCAACACATTGGCACCTTCATCTTTAAGCCCAATATCGCTGGCCTTGAATCAGCA
CATTGGCACCTTCATCTT
Found at i:1098532 original size:20 final size:20
Alignment explanation
Indices: 1098507--1098560 Score: 83
Period size: 20 Copynumber: 2.7 Consensus size: 20
1098497 GTTATAAGCA
*
1098507 ATGTATCGATACAAT-TCATC
1 ATGTATCGATACAATGT-ACC
1098527 ATGTATCGATACAATGTACC
1 ATGTATCGATACAATGTACC
1098547 ATGTATCGATACAA
1 ATGTATCGATACAA
1098561 ACAGTGGTAG
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 31 0.97
21 1 0.03
ACGTcount: A:0.37, C:0.19, G:0.13, T:0.31
Consensus pattern (20 bp):
ATGTATCGATACAATGTACC
Found at i:1098633 original size:19 final size:19
Alignment explanation
Indices: 1098589--1098644 Score: 85
Period size: 19 Copynumber: 2.9 Consensus size: 19
1098579 CTGCCAGTTT
**
1098589 CATGTATCGATACAATTGTC
1 CATGTATCGATACAA-TGAA
1098609 CATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
1098628 CATGTATCGATACAATG
1 CATGTATCGATACAATG
1098645 TATCGATACA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
19 19 0.56
20 15 0.44
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.30
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:1098647 original size:13 final size:13
Alignment explanation
Indices: 1098629--1098655 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1098619 TACAATGAAC
1098629 ATGTATCGATACA
1 ATGTATCGATACA
1098642 ATGTATCGATACA
1 ATGTATCGATACA
1098655 A
1 A
1098656 AGCATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1100272 original size:4 final size:4
Alignment explanation
Indices: 1100263--1100301 Score: 69
Period size: 4 Copynumber: 9.8 Consensus size: 4
1100253 ATTGAGGTGC
*
1100263 TTAT TTAT TTAT TTAT TTAT TCAT TTAT TTAT TTAT TTA
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTA
1100302 ATTTGTTTTG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.72
Consensus pattern (4 bp):
TTAT
Found at i:1101439 original size:22 final size:22
Alignment explanation
Indices: 1101384--1101439 Score: 105
Period size: 21 Copynumber: 2.6 Consensus size: 22
1101374 ACAGTTACCT
1101384 ATGAACAGTGATGTATCGATAC
1 ATGAACAGTGATGTATCGATAC
1101406 ATGAA-AGTGATGTATCGATAC
1 ATGAACAGTGATGTATCGATAC
1101427 ATGAACAGTGATG
1 ATGAACAGTGATG
1101440 AATAGTGATG
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 21 0.64
22 12 0.36
ACGTcount: A:0.38, C:0.11, G:0.25, T:0.27
Consensus pattern (22 bp):
ATGAACAGTGATGTATCGATAC
Found at i:1101446 original size:10 final size:10
Alignment explanation
Indices: 1101427--1101457 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
1101417 GTATCGATAC
1101427 ATGAACAGTG
1 ATGAACAGTG
*
1101437 ATGAATAGTG
1 ATGAACAGTG
1101447 ATGAACAGTG
1 ATGAACAGTG
1101457 A
1 A
1101458 AAATGAGATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.42, C:0.06, G:0.29, T:0.23
Consensus pattern (10 bp):
ATGAACAGTG
Found at i:1101517 original size:18 final size:19
Alignment explanation
Indices: 1101481--1101517 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
1101471 CTACTACCAA
*
1101481 TGTATTGATACATATTTTG
1 TGTATCGATACATATTTTG
1101500 TGTATCGATACA-ATTTTG
1 TGTATCGATACATATTTTG
1101518 GCTACTGCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.27, C:0.08, G:0.16, T:0.49
Consensus pattern (19 bp):
TGTATCGATACATATTTTG
Found at i:1101546 original size:53 final size:53
Alignment explanation
Indices: 1101481--1101617 Score: 229
Period size: 53 Copynumber: 2.6 Consensus size: 53
1101471 CTACTACCAA
* *
1101481 TGTATTGATACATATTTTGTGTATCGATACAATTTTGGCTACTGCCAATGACC
1 TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
* *
1101534 TGTATCGATACATATTGTGTGTATCGATACAAATTTGGCTACTGCCAATGTCC
1 TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
1101587 TGTATCGATACATATTTGTGTGTATCGATAC
1 TGTATCGATACATATTT-TGTGTATCGATAC
1101618 TATGCAATCT
Statistics
Matches: 78, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
53 65 0.83
54 13 0.17
ACGTcount: A:0.26, C:0.17, G:0.18, T:0.39
Consensus pattern (53 bp):
TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
Found at i:1101653 original size:21 final size:20
Alignment explanation
Indices: 1101605--1101659 Score: 65
Period size: 21 Copynumber: 2.7 Consensus size: 20
1101595 TACATATTTG
**
1101605 TGTGTATCGATACTATGCAA
1 TGTGTATCGATACTATAAAA
* *
1101625 TCTGTATCGATACATTTAAAA
1 TGTGTATCGATAC-TATAAAA
1101646 TGTGTATCGATACT
1 TGTGTATCGATACT
1101660 TTTCAGAGTT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
20 13 0.45
21 16 0.55
ACGTcount: A:0.31, C:0.15, G:0.16, T:0.38
Consensus pattern (20 bp):
TGTGTATCGATACTATAAAA
Found at i:1101724 original size:21 final size:21
Alignment explanation
Indices: 1101698--1101738 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
1101688 GTCAACCTTG
1101698 TGTATTAATACCAATA-GTATA
1 TGTATTAATA-CAATACGTATA
*
1101719 TGTATTGATACAATACGTAT
1 TGTATTAATACAATACGTAT
1101739 TTTTACTTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.39
Consensus pattern (21 bp):
TGTATTAATACAATACGTATA
Found at i:1103891 original size:27 final size:27
Alignment explanation
Indices: 1103861--1103917 Score: 98
Period size: 27 Copynumber: 2.1 Consensus size: 27
1103851 GAGCTACCCC
1103861 TTTTGCCCAATTGTCCTT-CTTTTCGCA
1 TTTTGCCCAATTGTCCTTCCTTTT-GCA
1103888 TTTTGCCCAATTGTCCTTCCTTTTGCA
1 TTTTGCCCAATTGTCCTTCCTTTTGCA
1103915 TTT
1 TTT
1103918 GCATGACTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
27 24 0.83
28 5 0.17
ACGTcount: A:0.11, C:0.28, G:0.11, T:0.51
Consensus pattern (27 bp):
TTTTGCCCAATTGTCCTTCCTTTTGCA
Found at i:1107958 original size:34 final size:35
Alignment explanation
Indices: 1107912--1107977 Score: 107
Period size: 35 Copynumber: 1.9 Consensus size: 35
1107902 GGTCATTTCT
1107912 TTTTTTCGAAATTTT-AAATTTTTTGATTTTTAAA
1 TTTTTTCGAAATTTTAAAATTTTTTGATTTTTAAA
* *
1107946 TTTTTTCTAAATTTTAAAATTTTTTTATTTTT
1 TTTTTTCGAAATTTTAAAATTTTTTGATTTTT
1107978 GATTTTTAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 14 0.48
35 15 0.52
ACGTcount: A:0.27, C:0.03, G:0.03, T:0.67
Consensus pattern (35 bp):
TTTTTTCGAAATTTTAAAATTTTTTGATTTTTAAA
Done.