Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold408
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 555187
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
File 1 of 3
Found at i:6900 original size:15 final size:15
Alignment explanation
Indices: 6877--6907 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
6867 TAAAAATGTC
*
6877 CAAATTGAAGAAGCT
1 CAAAATGAAGAAGCT
6892 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
6907 C
1 C
6908 CATAAGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.19, T:0.16
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:11503 original size:20 final size:21
Alignment explanation
Indices: 11480--11534 Score: 76
Period size: 20 Copynumber: 2.7 Consensus size: 21
11470 ACAATTCAAA
* *
11480 GTATCGATACATGTTACA-AT
1 GTATCGATACATGTAAAATAT
*
11500 GTATCGATACATGAAAAATAT
1 GTATCGATACATGTAAAATAT
11521 GTATCGATACATGT
1 GTATCGATACATGT
11535 CATTGGGATT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
20 15 0.50
21 15 0.50
ACGTcount: A:0.38, C:0.13, G:0.16, T:0.33
Consensus pattern (21 bp):
GTATCGATACATGTAAAATAT
Found at i:13251 original size:476 final size:470
Alignment explanation
Indices: 12361--14404 Score: 2043
Period size: 476 Copynumber: 4.3 Consensus size: 470
12351 ATAAGCTTTC
* ** ** *
12361 AGGCACCATAAACATAGTCTTCTCGTTAGGATACATGATATTGTTGTTTTGGTTTCACAAGAAAG
1 AGGCACCATAAAC-TAGTCTTCTCATTAGGATACATGATATT-AAGTTTT-GTTTCGTAA-AAAA
* ** * * * * *
12426 GCATTTTTCCCACCAAATTTTGCAAAGTCTAAGTTCGTGCTTCAAATTAGACAAACATGGATTCT
62 GCCTTTTTCAAACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATAAGACAAACATGGATTCT
* * * * *
12491 AGTAATGATTTTCAATT-ATTTTATGATTAGGCACTATAAGCACATTTTCCTCATTAGGATAAAA
127 AGTAATGATCTTC-ATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAT
* * *
12555 GGTATTGATGATTTTTTTTTGCACGAAAATCTTTTCTTTACCTTATTTTCCTTAAAATCATAGTT
191 GATATTGATGATTTTCTTTTGCACGAAAATCTTTTCTTTACC-TATTTTCCTTAAAATCAAAGTT
* * *
12620 CATCTCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTATTTTTAGGATTGGGATTC
255 CATC-CTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTTAAGATTGGGATAC
* * *
12685 TAAAACACATTCCTTTCATTAGGATACTTGACAATGATGCTTTGGTGTCATAAGAAAAGCTTTTC
319 TAAAACACATTCCTTTCATTAGGATACTAGACAATGAAGCTTTGGTGTCACAAGAAAAGCTTTTC
* * * * * *
12750 TTTCCACTACTTTTGATAGAATCAAAGTTTGTCTTTTAAATAAGACAAACATGAATAGTTAAACT
384 TTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACT
* * *
12815 AATCTCCATTCTTTTCAAGATC
449 AATCCCCATTCTTTTCAGGATT
* * *
12837 AGGCACCATAAAC-AGTCATCTCATTAGGATACGTGATATTGAAGTTTTTATTTCGTAAAAAAGA
1 AGGCACCATAAACTAGTCTTCTCATTAGGATACATGATATT-AAG-TTTTGTTTCGTAAAAAAG-
* * * * *
12901 CCTTTTTCAAAGCATTTTTTATAAAGTCTAAGTTTATGCCTCAAATAAGACAAACATGGATTCGA
63 CCTTTTTCAAACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATAAGACAAACATGGATTCTA
* ** * ** * *
12966 -TAAATGTTCTTCCCTCATTTTGTAATTAGGCACTATACGCGCATTCTCCTCATTAGGAGAAATG
128 GT-AATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATG
* *
13030 ATATTGATGATTTTCTTTTACACTGAAAATCTTTTCTTTGACCTATATTTCTTTAAAAT-AAACG
192 ATATTGATGATTTTCTTTTGCAC-GAAAATCTTTTCTTT-ACCTAT-TTTCCTTAAAATCAAA--
* * * * * * *
13094 GTT-ATTCCTTAAATAAGATAAGCATTGATTCTCGTAACAATCTCCGTTCTTTTAAAGATTGGTA
252 GTTCA-TCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTTAAGATTGGGA
** * * * *
13158 -ACGTAAAATGCATTCCTTTCATTAGGATACTAGACATTGAAGTTTTGGTGTCGCAAGATAA-CA
316 TAC-TAAAACACATTCCTTTCATTAGGATACTAGACAATGAAGCTTTGGTGTCACAAGAAAAGC-
* * * *
13221 TTTTCTCTT-CACCATTTTTGATAGAATCAAAGTTT-TTTTTTAAATAAAACAAACATTAATACT
379 TTTTCT-TTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACT
*
13284 CATACTAATCCCCCTTCTTTTCAGGATT
443 CATACTAATCCCCATTCTTTTCAGGATT
* * * * * * *
13312 AGGCACTATAAACGTAGCCTTCTTATAAGGATATATGATATTAAAGCTTTGGTTC-TACAAGAAA
1 AGGCACCATAAAC-TAGTCTTCTCATTAGGATACATGATATT-AAGTTTTGTTTCGTA-AA-AAA
* ** ** * * *
13376 GGCTTTTTTCCCACCAATTAATGTAAAGTCCAAGTTCGTGCCTCAAA-AGAGCCAAACATGGATT
62 -GCCTTTTTCAAACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATA-AGACAAACATGGATT
* * *
13440 CTAGCATTGATCTTCATTCAGTTTT-TGATTAGGCACTATAAACACATTCTCCTCATTGGGATAA
125 CTAGTAATGATCTTCATTCA-TTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAA
* ** * *
13504 ATGATATTGATGATTTTCTTTTCCTTGAAAATCTTTACTTTGCCCTATTTTCCTTAAAATCAAAG
189 ATGATATTGATGATTTTCTTTTGCACGAAAATCTTTTCTTT-ACCTATTTTCCTTAAAATCAAAG
* * * * * * *
13569 TTCATCCTTTAAA-AAGACAAGTATCAATTCTCGCAACAGTCTCTATTCTTTTCAAGATTGAGA-
253 TTCATCC-TTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTTAAGATTGGGAT
* ** * **
13632 ACCAAAAACACATTCCTTTTTTTAGGATAC-ATGACATTGAAGCTTTGGTGTTTGCAAGAAAAGC
317 A-CTAAAACACATTCCTTTCATTAGGATACTA-GACAATGAAGCTTTGGTG-TCACAAGAAAAGC
* *
13696 TTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACACGAACACTC
379 TTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTC
* *
13761 ATACTAGTCCCCATTCTTTTTAGGATT
444 ATACTAATCCCCATTCTTTTCAGGATT
* * ** * * * * * * *
13788 AGGTACCATAAACATAATCTTCTCATTAGGATACACAACATTATGCTTTGGTTCCGCAAGAAAGG
1 AGGCACCATAAAC-TAGTCTTCTCATTAGGATACATGATATTAAG-TTTTGTTTCGTAAAAAAGC
** * * ** *
13853 CTTTTTCCTGACCAATTTTTGTAAAGTTTAAGTTTATGCCTCAAATGTGACAAACATAGATTCTA
64 CTTTTT-CAAACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATAAGACAAACATGGATTCTA
* * * ** **
13918 GTAATGATCGTT-ATTCATTTTGTGATTAGGCATTATGAACACATTGTTTTCATTAGGATAAGCG
128 GTAATGATC-TTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATG
* * *
13982 ATGTTGATGATTTTCTTTTGCACGAAAATCTTTTCTTTACCCTATTTTCTTTAAAATCATAGTTC
192 ATATTGATGATTTTCTTTTGCACGAAAATCTTTTCTTTA-CCTATTTTCCTTAAAATCAAAGTTC
* * *
14047 ATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTATTTTTAGGATTGGGATTCT
256 AT-CCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTTAAGATTGGGATACT
* *
14112 AAAACACATTCCTTTCATTAGGATACTTGACAATGATGCTTTGGTGTCACAAGAAAAGCTTTTCT
320 AAAACACATTCCTTTCATTAGGATACTAGACAATGAAGCTTTGGTGTCACAAGAAAAGCTTTTCT
*
14177 TTCCACCATTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATACTCATACTA
385 TTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTA
* *
14242 ATCCCCATTCTTATCAGGACT
450 ATCCCCATTCTTTTCAGGATT
*** * * * * * * * *
14263 ACAAACTATAAACATAGTCTTCTTATTTGGATACATGATAAT-GGTGCTTTGGTTTTGCAAGAAA
1 AGGCACCATAAAC-TAGTCTTCTCATTAGGATACATGATATTAAGT--TTT-GTTTCGTAAAAAA
* ** ** * ** * * *
14327 GGCTTTTTCCCCATGAATTTTTGTAAAGTCTAAGTTTATGCCTCAAATGTGATAAAAATGGATCC
62 GCCTTTTT-CAAACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATAAGACAAACATGGATTC
14392 TAGTAATGATCTT
126 TAGTAATGATCTT
14405 TTTTTGTTTT
Statistics
Matches: 1287, Mismatches: 237, Indels: 89
0.80 0.15 0.06
Matches are distributed among these distances:
473 8 0.01
474 251 0.20
475 435 0.34
476 436 0.34
477 152 0.12
478 5 0.00
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (470 bp):
AGGCACCATAAACTAGTCTTCTCATTAGGATACATGATATTAAGTTTTGTTTCGTAAAAAAGCCT
TTTTCAAACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATAAGACAAACATGGATTCTAGTA
ATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATAT
TGATGATTTTCTTTTGCACGAAAATCTTTTCTTTACCTATTTTCCTTAAAATCAAAGTTCATCCT
TAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTTAAGATTGGGATACTAAAACA
CATTCCTTTCATTAGGATACTAGACAATGAAGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCAC
CATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCC
ATTCTTTTCAGGATT
Found at i:13895 original size:475 final size:475
Alignment explanation
Indices: 12361--14404 Score: 2261
Period size: 475 Copynumber: 4.3 Consensus size: 475
12351 ATAAGCTTTC
* * * *
12361 AGGCACCATAAACATAGTCTTCTCGTTAGGATACATGATATTGTTGTTTTGGTTTCACAAGAAAG
1 AGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAG
* * ** * **
12426 GCATTTTTCCCACCAAATTTTGCAAAGTCTAAGTTCGTGCTTCAAATTAGACAAACATGGATTCT
66 GC-TTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTATGCCTCAAAAGAGACAAACATGGATTCT
* * * * *
12491 AGTAATGATTTTCAATT-ATTTTATGATTAGGCACTATAAGCACATTTTCCTCATTAGGATAAAA
130 AGTAATGATCTTC-ATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAT
* * * * *
12555 GGTATTGATGATTTTTTTTTGCACGAAAATCTTTTCTTTACCTTATTTTCCTTAAAATCATAGTT
194 GATATTGATGATTTTCTTTTCCACGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTT
* * **
12620 CAT-CTCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTATTTTTAGGATTGGGATT
259 CATCCT-TTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTTAAGATTGGGAAC
* **
12684 CTAAAACACATTCCTTTCATTAGGATACTTGACAATGATGCTTTGGTGTCATAAGAAAAGCTTTT
323 CTAAAACACATTCCTTTCATTAGGATACTTGACAATGAAGCTTTGGTGTCGCAAGAAAAGCTTTT
* * * * * *
12749 CTTTCCACTACTTTTGATAGAATCAAAGTTTGTCTTTTAAATAAGACAAACATGAATAGTTAAAC
388 CTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATAC
* * *
12814 TAATCTCCATTCTTTTCAAGATC
453 TAATCCCCATTCTTTTCAGGATT
* * * * ** * *
12837 AGGCACCATAAAC--AGTCATCTCATTAGGATACGTGATATTGAAGTTTTTATTTCGTAAAAAAG
1 AGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAG
* ** * * *
12900 ACCTTTTTCAAAGCATTTTTTATAAAGTCTAAGTTTATGCCTCAAATA-AGACAAACATGGATTC
66 -GCTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTATGCCTCAAA-AGAGACAAACATGGATTC
* * ** * ** * *
12964 GA-TAAATGTTCTTCCCTCATTTTGTAATTAGGCACTATACGCGCATTCTCCTCATTAGGAGAAA
129 TAGT-AATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAA
* *
13028 TGATATTGATGATTTTCTTTTACACTGAAAATCTTTTCTTTGA-CCTATATTTCTTTAAAAT-AA
193 TGATATTGATGATTTTCTTTTCCAC-GAAAATCTTTTCTTT-ACCCTAT-TTTCCTTAAAATCAA
* * * * * *
13091 ACGGTT-ATTCC-TTAAATAAGATAAGCATTGATTCTCGTAACAATCTCCGTTCTTTTAAAGATT
255 A--GTTCA-TCCTTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTTAAGATT
* * ** * * * *
13154 GGTAACGTAAAATGCATTCCTTTCATTAGGATACTAGACATTGAAGTTTTGGTGTCGCAAGATAA
317 GGGAACCTAAAACACATTCCTTTCATTAGGATACTTGACAATGAAGCTTTGGTGTCGCAAGAAAA
* * * *
13219 -CATTTTCTCTT-CACCATTTTTGATAGAATCAAAGTTT-TTTTTTAAATAAAACAAACATTAAT
382 GC-TTTTCT-TTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
*
13281 ACTCATACTAATCCCCCTTCTTTTCAGGATT
445 ACTCATACTAATCCCCATTCTTTTCAGGATT
* * * * * * * * *
13312 AGGCACTATAAACGTAGCCTTCTTATAAGGATATATGATATTAAAGCTTTGG-TTCTACAAGAAA
1 AGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTC-GCAAGAAA
** * ** *
13376 GGCTTTTTTCCCACCAATTAATGTAAAGTCCAAGTTCGTGCCTCAAAAGAGCCAAACATGGATTC
65 GGC-TTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTATGCCTCAAAAGAGACAAACATGGATTC
* * *
13441 TAGCATTGATCTTCATTCAGTTTT-TGATTAGGCACTATAAACACATTCTCCTCATTGGGATAAA
129 TAGTAATGATCTTCATTCA-TTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAA
** * *
13505 TGATATTGATGATTTTCTTTTCCTTGAAAATCTTTACTTTGCCCTATTTTCCTTAAAATCAAAGT
193 TGATATTGATGATTTTCTTTTCCACGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGT
* * * * * * *
13570 TCATCCTTTAAA-AAGACAAGTATCAATTCTCGCAACAGTCTCTATTCTTTTCAAGATTGAGAAC
258 TCATCCTTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTTAAGATTGGGAAC
* ** * * *
13634 CAAAAACACATTCCTTTTTTTAGGATACATGACATTGAAGCTTTGGTGTTTGCAAGAAAAGCTTT
323 CTAAAACACATTCCTTTCATTAGGATACTTGACAATGAAGCTTTGGTG-TCGCAAGAAAAGCTTT
* *
13699 TCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACACGAACACTCATA
387 TCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATA
* *
13764 CTAGTCCCCATTCTTTTTAGGATT
452 CTAATCCCCATTCTTTTCAGGATT
* * ** * *
13788 AGGTACCATAAACATAATCTTCTCATTAGGATACACAACATT-ATGCTTTGGTTCCGCAAGAAAG
1 AGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAG
* * * * *
13852 GCTTTTTCCTGACCAATTTTTGTAAAGTTTAAGTTTATGCCTCAAATGTGACAAACATAGATTCT
66 GCTTTTTCC-CACCAATTTTTGTAAAGTCTAAGTTTATGCCTCAAAAGAGACAAACATGGATTCT
* * * ** **
13917 AGTAATGATCGTT-ATTCATTTTGTGATTAGGCATTATGAACACATTGTTTTCATTAGGATAAGC
130 AGTAATGATC-TTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAT
* * * *
13981 GATGTTGATGATTTTCTTTTGCACGAAAATCTTTTCTTTACCCTATTTTCTTTAAAATCATAGTT
194 GATATTGATGATTTTCTTTTCCACGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTT
* * * **
14046 CATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTATTTTTAGGATTGGGATTC
259 CATCCTTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTTAAGATTGGGAACC
* *
14111 TAAAACACATTCCTTTCATTAGGATACTTGACAATGATGCTTTGGTGTCACAAGAAAAGCTTTTC
324 TAAAACACATTCCTTTCATTAGGATACTTGACAATGAAGCTTTGGTGTCGCAAGAAAAGCTTTTC
*
14176 TTTCCACCATTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATACTCATACT
389 TTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACT
* *
14241 AATCCCCATTCTTATCAGGACT
454 AATCCCCATTCTTTTCAGGATT
*** * * * * * *
14263 ACAAACTATAAACATAGTCTTCTTATTTGGATACATGATAATGGTGCTTTGGTTTTGCAAGAAAG
1 AGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAG
** * * * * *
14328 GCTTTTTCCCCATGAATTTTTGTAAAGTCTAAGTTTATGCCTCAAATGTGATAAAAATGGATCCT
66 GCTTTTT-CCCACCAATTTTTGTAAAGTCTAAGTTTATGCCTCAAAAGAGACAAACATGGATTCT
14393 AGTAATGATCTT
130 AGTAATGATCTT
14405 TTTTTGTTTT
Statistics
Matches: 1293, Mismatches: 240, Indels: 71
0.81 0.15 0.04
Matches are distributed among these distances:
473 2 0.00
474 258 0.20
475 443 0.34
476 428 0.33
477 157 0.12
478 5 0.00
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (475 bp):
AGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAG
GCTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTTATGCCTCAAAAGAGACAAACATGGATTCTA
GTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGA
TATTGATGATTTTCTTTTCCACGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCA
TCCTTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTTAAGATTGGGAACCTA
AAACACATTCCTTTCATTAGGATACTTGACAATGAAGCTTTGGTGTCGCAAGAAAAGCTTTTCTT
TCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAA
TCCCCATTCTTTTCAGGATT
Found at i:14250 original size:159 final size:159
Alignment explanation
Indices: 13636--14250 Score: 395
Period size: 159 Copynumber: 3.9 Consensus size: 159
13626 TTGAGAACCA
** * * * *
13636 AAAACACATTCCTTTTTTTAGGATACATGACATTGAAGCTTTGGTGTTTGCAAGAAAAGCTTTTC
1 AAAACACATTCCTTTCATTAGGATACACGACAATGATGCTTTGGTG-TCGCAAGAAAAGCTTTTC
* * *
13701 TTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACACGAACACTCATACT
65 TTTCCACCATTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATACTCATACT
* * * * *
13766 AGTCCCCATTCTTTTTAGGATTAGG-TACC
130 AATCCCCATTATTTTTAGGATTGGGATTCT
* * * * *
13795 ATAAACATAAT-CTTCTCATTAGGATACACAAC-ATTATGCTTTGGT-TCCGCAAGAAAGGC--T
1 A-AAACACATTCCTT-TCATTAGGATACACGACAATGATGCTTTGGTGT-CGCAAGAAAAGCTTT
** * **
13855 T-TTTCCTGACCAATTTTTG-TA-AAGTTTAAGTTTATGC-CTCAAATGTGACAAACAT-AGAT-
63 TCTTTCC--ACC-ATTTTTGATAGAA-TCAAAGTTTAT-CTCTTAAATAAGACAAACATGA-ATA
* *** * * * *
13914 -TC-TAGTAATGATCGTTATTCATTTTGTGATTAGGCATTAT
122 CTCATACTAATCCCCATTATT--TTTAG-GATT-GGGATTCT
* ** *** * ** * * * *
13954 -GAACACATTGTTTTCATTAGGATA-AGCGATGTTGATGATTTTCTTTTGCACGAAAATCTTTTC
1 AAAACACATTCCTTTCATTAGGATACA-CGACAATGATGCTTTGGTGTCGCAAGAAAAGCTTTTC
* * * * * * * * *
14017 TTTACC-CTATTTTCT-TTAAAATCATAGTTCATCCCTTAAATAAGACAAGCATCG-ATTCTCGT
65 TTT-CCACCATTTT-TGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACAT-GAATACTCAT
* * *
14079 AATAGTCTCCATTATTTTTAGGATTGGGATTCT
127 ACTAATCCCCATTATTTTTAGGATTGGGATTCT
** *
14112 AAAACACATTCCTTTCATTAGGATACTTGACAATGATGCTTTGGTGTCACAAGAAAAGCTTTTCT
1 AAAACACATTCCTTTCATTAGGATACACGACAATGATGCTTTGGTGTCGCAAGAAAAGCTTTTCT
14177 TTCCACCATTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATACTCATACTA
66 TTCCACCATTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATACTCATACTA
14242 ATCCCCATT
131 ATCCCCATT
14251 CTTATCAGGA
Statistics
Matches: 327, Mismatches: 93, Indels: 72
0.66 0.19 0.15
Matches are distributed among these distances:
154 10 0.03
155 7 0.02
156 10 0.03
157 52 0.16
158 53 0.16
159 149 0.46
160 28 0.09
161 5 0.02
162 13 0.04
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.37
Consensus pattern (159 bp):
AAAACACATTCCTTTCATTAGGATACACGACAATGATGCTTTGGTGTCGCAAGAAAAGCTTTTCT
TTCCACCATTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATACTCATACTA
ATCCCCATTATTTTTAGGATTGGGATTCT
Found at i:14424 original size:951 final size:948
Alignment explanation
Indices: 12368--14429 Score: 2376
Period size: 951 Copynumber: 2.2 Consensus size: 948
12358 TTCAGGCACC
** * * *
12368 ATAAACATAGTCTTCTCGTTAGGATACATGATATTGTTGTTTTGGTTTCACAAGAAAGGCATTTT
1 ATAAACATAGTCTTCTTATTAGGATACATGATATTGATGCTTTGGTTTTACAAGAAAGGC-TTTT
* * *
12433 TCCCACCAAATTTTGCAAAGTCTAAGTTCGTGCTTCAAAT-TAGACAAACATGGATTCTAGTAAT
65 TCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGT-GACAAACATGGATTCTAGTAAT
** * * * *
12497 GAT-TTTCAATTATTTTATGATTAGGCACTATAAGCACATTTTCCTCATTAGGATAAAAGGTATT
129 GATCTTT-TTTTGTTTT-TGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAAGATATT
* * * * *
12561 GATGATTTTTTTTTGCACGAAAATCTTTTCTTTACCTTATTTTCCTTAAAATCATAGTTCATCTC
192 GATGATTTTCTTTTCCACGAAAATCTTTACTTTACCCTATTTTCCTTAAAATCAAAGTTCATCTC
* * * * * * ** *
12626 TTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTATTTTTAGGATTGGGATTCTAAAAC
257 TTAAATAAGACAAGCATCAATTCTCGCAACAGTCTCCATTATTTTCAAGATTGAGAACCAAAAAC
* *
12691 ACATTCCTTTCATTAGGATACTTGACAATGATGCTTTGGTGTCATAAGAAAAGCTTTTCTTTCCA
322 ACATTCCTTTCATTAGGATACATGACAATGAAGCTTTGGTGTCATAAGAAAAGCTTTTCTTTCCA
* * * * * * *
12756 CTACTTTTGATAGAATCAAAGTTTGTCTTTTAAATAAGACAAACATGAATAGTTAAACTAATCTC
387 CCACTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACACGAACACTCAAACTAATCCC
* *** * * *
12821 CATTCTTTTCAAGATCAGGCACCATAAACAGTCATCTCATTAGGATACGTGATATTGAAGTTTTT
452 CATTCTTTTCAAGATCAGGCACCATAAACAATCATCTCATTAGGATACACAACATTGAAGCTTTG
* * * *
12886 ATTTCGTAAAAAAGACCTTTTTCAAAGCATTTTTTATAAAGTCTAAGTTTATGCCTCAAATAAGA
517 ATTCCGCAAAAAAGACCTTTTTCAAACCAATTTTTATAAAGTCTAAGTTTATGCCTCAAATAAGA
* * * * *
12951 CAAACATGGATTCGATAAATGTTCTTCCCTCATTTTGTAATTAGGCACTATACGCGCATTCTCCT
582 CAAACATAGATTCGATAAATGATCTTCACTCATTTTGTAATTAGGCACTATACACACATTCTCCT
*
13016 CATTAGGAGAAATGATATTGATGATTTTCTTTTACACTGAAAATCTTTTCTTTGACCTATATTTC
647 CATTAGGAGAAACGATATTGATGATTTTCTTTTACACTGAAAATCTTTTCTTTGACCTATATTTC
* * * * *
13081 TTTAAAATAAACGGTTATTCCTTAAATAAGATAAGCATTGATTCTCGTAACAATCTCCGTTCTTT
712 TTTAAAATAAAC-GTTATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTATTT
* ** * * *
13146 TAAAGATTGGTAACGTAAAATGCATTCCTTTCATTAGGATACTAGACATTGAAGTTTTGGTGTCG
776 TAAAGATTGGGAACGTAAAACACATTCCTTTCATTAGGATACTAGACAATGAAGCTTTGGTGTCA
* * *
13211 CAAGATAACATTTTCTCTTCACCATTTTTGATAGAATCAAAGTTTTTTTTTAAATAAAACAAACA
841 CAAGAAAACATTTTCTCTTCACCATTTTTGATAGAATCAAAGTTTTCTCTTAAATAAAACAAACA
* * * * ***
13276 TTAATACTCATACTAATCCCCCTTCTTTTCAGGATTAGGCACT
906 TGAATACTCATACTAATCCCCATTCTTATCAGGACTACAAACT
* * * * * * *
13319 ATAAACGTAGCCTTCTTATAAGGATATATGATATTAAAGCTTTGGTTCTACAAGAAAGGCTTTTT
1 ATAAACATAGTCTTCTTATTAGGATACATGATATTGATGCTTTGGTTTTACAAGAAAGGC-TTTT
** * * * * * *
13384 TCCCACCAATTAATGTAAAGTCCAAGTTCGTGCCTCAAAAGAGCCAAACATGGATTCTAGCATTG
65 TCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGTGACAAACATGGATTCTAGTAATG
* ** * *
13449 ATCTTCATTCAGTTTTTGATTAGGCACTATAAACACATTCTCCTCATTGGGATAAATGATATTGA
130 ATCTT-TTTTTGTTTTTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAAGATATTGA
** *
13514 TGATTTTCTTTTCCTTGAAAATCTTTACTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC-CTT
194 TGATTTTCTTTTCCACGAAAATCTTTACTTTACCCTATTTTCCTTAAAATCAAAGTTCATCTC-T
* * *
13578 TAAA-AAGACAAGTATCAATTCTCGCAACAGTCTCTATTCTTTTCAAGATTGAGAACCAAAAACA
258 TAAATAAGACAAGCATCAATTCTCGCAACAGTCTCCATTATTTTCAAGATTGAGAACCAAAAACA
** * *
13642 CATTCCTTTTTTTAGGATACATGACATTGAAGCTTTGGTGT-TTGCAAGAAAAGCTTTTCTTTCC
323 CATTCCTTTCATTAGGATACATGACAATGAAGCTTTGGTGTCAT--AAGAAAAGCTTTTCTTTCC
* * *
13706 ACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACACGAACACTCATACTAGTCC
386 ACCACTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACACGAACACTCAAACTAATCC
* * * * * *
13771 CCATTCTTTTTAGGATTAGGTACCATAAACATAATCTTCTCATTAGGATACACAACATT-ATGCT
451 CCATTCTTTTCAAGATCAGGCACCATAAAC--AATCATCTCATTAGGATACACAACATTGAAGCT
* * * ** * *
13835 TTGGTTCCGCAAGAAAG-GCTTTTTCCTGACCAATTTTTGTAAAGTTTAAGTTTATGCCTCAAAT
514 TTGATTCCGCAAAAAAGACCTTTTT-CAAACCAATTTTTATAAAGTCTAAGTTTATGCCTCAAAT
** * * * *
13899 GTGACAAACATAGATTCTAGT-AATGATCGTT-ATTCATTTTGTGATTAGGCATTATGA-ACACA
578 AAGACAAACATAGATTCGA-TAAATGATC-TTCACTCATTTTGTAATTAGGCACTAT-ACACACA
* ** * * * *
13961 TTGTTTTCATTAGGATAAGCGATGTTGATGATTTTCTTTTGCAC-GAAAATCTTTTCTTT-ACCC
640 TTCTCCTCATTAGGAGAAACGATATTGATGATTTTCTTTTACACTGAAAATCTTTTCTTTGA-CC
* * *
14024 TAT-TTTCTTTAAAATCATA-GTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCT
704 TATATTTCTTTAAAAT-AAACGTT-ATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCT
* * * * *
14087 CCATTATTTTTAGGATTGGGATTC-TAAAACACATTCCTTTCATTAGGATACTTGACAATGATGC
767 CCATTATTTTAAAGATTGGGA-ACGTAAAACACATTCCTTTCATTAGGATACTAGACAATGAAGC
14151 TTTGGTGTCACAAGAAAAGC-TTTTCT-TTCCACCATTTTTGATAGAATCAAAGTTTATCTCTTA
831 TTTGGTGTCACAAGAAAA-CATTTTCTCTT-CACCATTTTTGATAGAATCAAAGTTT-TCTCTTA
*
14214 AATAAGACAAACATGAATACTCATACTAATCCCCATTCTTATCAGGACTACAAACT
893 AATAAAACAAACATGAATACTCATACTAATCCCCATTCTTATCAGGACTACAAACT
* * * *
14270 ATAAACATAGTCTTCTTATTTGGATACATGATAATGGTGCTTTGGTTTTGCAAGAAAGGCTTTTT
1 ATAAACATAGTCTTCTTATTAGGATACATGATATTGATGCTTTGGTTTTACAAGAAAGGCTTTTT
** ** * * *
14335 CCCCATGAATTTTTGTAAAGTCTAAGTTTATGCCTCAAATGTGATAAAAATGGATCCTAGTAATG
66 -CCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGTGACAAACATGGATTCTAGTAATG
* *
14400 ATCTTTTTTTGTTTTGTTATTAGGCCCTAT
130 ATCTTTTTTTGTTTT-TGATTAGGCACTAT
14430 TTTCCATAAA
Statistics
Matches: 915, Mismatches: 175, Indels: 42
0.81 0.15 0.04
Matches are distributed among these distances:
949 6 0.01
950 243 0.27
951 507 0.55
952 134 0.15
953 25 0.03
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (948 bp):
ATAAACATAGTCTTCTTATTAGGATACATGATATTGATGCTTTGGTTTTACAAGAAAGGCTTTTT
CCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGTGACAAACATGGATTCTAGTAATGA
TCTTTTTTTGTTTTTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAAGATATTGATG
ATTTTCTTTTCCACGAAAATCTTTACTTTACCCTATTTTCCTTAAAATCAAAGTTCATCTCTTAA
ATAAGACAAGCATCAATTCTCGCAACAGTCTCCATTATTTTCAAGATTGAGAACCAAAAACACAT
TCCTTTCATTAGGATACATGACAATGAAGCTTTGGTGTCATAAGAAAAGCTTTTCTTTCCACCAC
TTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACACGAACACTCAAACTAATCCCCATT
CTTTTCAAGATCAGGCACCATAAACAATCATCTCATTAGGATACACAACATTGAAGCTTTGATTC
CGCAAAAAAGACCTTTTTCAAACCAATTTTTATAAAGTCTAAGTTTATGCCTCAAATAAGACAAA
CATAGATTCGATAAATGATCTTCACTCATTTTGTAATTAGGCACTATACACACATTCTCCTCATT
AGGAGAAACGATATTGATGATTTTCTTTTACACTGAAAATCTTTTCTTTGACCTATATTTCTTTA
AAATAAACGTTATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCCATTATTTTAAAG
ATTGGGAACGTAAAACACATTCCTTTCATTAGGATACTAGACAATGAAGCTTTGGTGTCACAAGA
AAACATTTTCTCTTCACCATTTTTGATAGAATCAAAGTTTTCTCTTAAATAAAACAAACATGAAT
ACTCATACTAATCCCCATTCTTATCAGGACTACAAACT
Found at i:16244 original size:474 final size:474
Alignment explanation
Indices: 14423--17523 Score: 3127
Period size: 475 Copynumber: 6.6 Consensus size: 474
14413 TTGTTATTAG
* * * * ** * * * *
14423 GCCCTATTTTCCATAAAATCAAAGTTTATCCTTTAAATAAGAAAAATATTGATTCTCGTAACAAT
1 GCCCTATTTTCCTTAAAATCAAAGTTTACCCCTTAAATAAGACAAGCATCGATTCTCATAATAGT
* * * *
14488 C-CTATTCTGTTT-AAGATTGGGAGCCAAAAACACATTCCC-TCAAGTAGGAAACATGACATTGA
66 CTCCATTCT-TTTCAAGATT-GGAACC-AAAACACATTCCCTTC-ATTAGGATACATGACATTGA
* * * * * * * *
14550 TGTTTTAGTGTCACAAGAAGAGCTTTTTTTTCCACCGTTTTTGA-TATAATCAAAGTTTATCTCT
127 TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGATTTT-ATTAGAATCAAAGTTTGTCTCT
* * * * *
14614 TAAATATGACAAACATAAATAGTAACACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACA
191 TAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACA
* * * * * * * *
14679 TTGTCTTCTCATTAGGATACGTGATAGTGATGTTTTGGTTTCACATGAAAGGCATTTTTCCTACC
256 TAGTCTTCTCATAAGGATACGCGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCTACC
* * * * *
14744 AATTTTTGTAAAGTCTAAGTTCT-TGCCTAAAATAAGGCAAACATGGATTCTTGTAACGATCTTC
321 AATTTTTGTAAAGTCTAAGTT-TGTGCCTCAAATGAGCCAAACATGGATTCTAGTAATGATCTTC
** * *
14808 ATTCATTTT-TAGATTAGGCACTATAAGTATATTCTCCTTT--TTAGGATAAATGATATTAATGA
385 ATTCATTTTGT-GATTAGGCACTATAAACACATTCT--TTTCATTAGGATAAATGATATTGATGA
* ** *
14870 TTTTCTTTTGTATGGAAATCTTTTCTTT
447 TTTTTTTTTACATGAAAATCTTTTCTTT
* * * * *
14898 GCCCTATTTTCC-TAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTCTCATTACAGT
1 GCCCTATTTTCCTTAAAATCAAAGTTTACCCCTTAAATAAGACAAGCATCGATTCTCATAATAGT
* * * * **
14962 CT--ATGCCATTTTCAAAATTGGGAACACAAAACACATTCCTTTCATCAGGATTTATGACATTGA
66 CTCCAT-TC-TTTTCAAGATT-GGAAC-CAAAACACATTCCCTTCATTAGGATACATGACATTGA
* * * *
15025 TGCTTCGGTGTCACAAGAAAAGCTTTTCTTT-CAACTATTTT-TGATAGAATCAAAGTTTGTCTC
127 TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGATTTTAT--TAGAATCAAAGTTTGTCTC
* * *
15088 TTAAATAAGAGAAACATGAATACTCATTCTAAT---C---C----C-----T----ACCATAAAC
190 TTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAAC
** * * * * * * *
15134 ATAGTCTTCTTTTTAGGATACACGATATTGATGATTTGGTTCCGTAAGAAAAGCTTTTTGCCTAC
255 ATAGTCTTCTCATAAGGATACGCGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCTAC
** * *
15199 CAATTTTTGTAAAGTCTAAGTTCATACCTCCAATGA-CACAAACATGGATTCTAGTAATGATCTT
320 CAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGC-CAAACATGGATTCTAGTAATGATCTT
* * ** * *
15263 CATTCATTTTGAGATTAGGCACTATAAGCACATTCTCCTCTTTACGATAAATGATATTGACTGAT
384 CATTCATTTTGTGATTAGGCACTATAAACACATTCTTTTCATTAGGATAAATGATATTGA-TGA-
*
15328 TTTTTTTTTTTGCAT-AGAAATCTTTTCTTT
447 --TTTTTTTTTACATGA-AAATCTTTTCTTT
* * *
15358 GCCTTATTTTTCC-TAAAATCAAAGTTTACACCTTAAATAAGACAAGTATCGATTCTCATAATAG
1 GCCCTA-TTTTCCTTAAAATCAAAGTTTACCCCTTAAATAAGACAAGCATCGATTCTCATAATAG
* * * * * *
15422 ACTCCATTATTTTTAAGATTGTGAACCTAAAACACATTCTCTTCATTAGGATAAATGAAATTGAT
65 TCTCCATTCTTTTCAAGATTG-GAACC-AAAACACATTCCCTTCATTAGGATACATGACATTGAT
* * * * *
15487 GCTTTGGTGTCGCAAGTAAAGCTTTTCTCTCCACC-ATTTTCGA-TAAAATTAAAGTTTATCTCT
128 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGATTTT--ATTAGAATCAAAGTTTGTCTCT
* * *
15550 TAAATAA-ACAAACATTAATACTCATACTAATCCCCATTCATTTT-AGGATTAGGCACCATAATC
191 TAAATAAGACAAACATGAATAGTCATACTAATCCCCATTC-TTTTCAGGATTAGGCACCATAAAC
* * * *
15613 ATAGTCTTCTCATTAGAATACGCGATATTGATGTTTTGGTTTCGCAAGAAAGG-TATTTTT-TTG
255 ATAGTCTTCTCATAAGGATACGCGATATTGATGCTTTGGTTTCGCAAGAAAGGCT-TTTTTCCT-
* * * * * *** * *
15676 GCCAATTTTTGTAAAGTCTAAGTTTATGCCTCATATAAGACAAACCCAGATTTTAGTAATGATTT
318 ACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGCCAAACATGGATTCTAGTAATGATCT
* * * * *
15741 TCATT-AGTTTTGTGATTAAGCATTATAAACACTTTATTTTCATTAGGATAAATGATATTGGTGA
383 TCATTCA-TTTTGTGATTAGGCACTATAAACACATTCTTTTCATTAGGATAAATGATATTGATGA
* * *
15805 TTTTTTTTTGCGTGAAAATCTTTTCTCT
447 TTTTTTTTTACATGAAAATCTTTTCTTT
* *
15833 GCCCTATTTTCCTTAAAATCAAAGTTTACCCCTTAAGTTAGACAAGCATC-ATTTCTCATAATAG
1 GCCCTATTTTCCTTAAAATCAAAGTTTACCCCTTAAATAAGACAAGCATCGA-TTCTCATAATAG
* * * * *
15897 TCCCCATTCTTTTCAAGATTAGGAACCAGAAACATATTCCATTCATTAGGATAGATGACATTGGT
65 TCTCCATTCTTTTCAAGATT-GGAACCA-AAACACATTCCCTTCATTAGGATACATGACATTGAT
* ** * * * *
15962 GCTTTAGTGTCATAAGAAAAACTTTTCTTTCCACTGATTTTGTTAG-ATCAAAGTTTGGCTCTTA
128 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGATTTTATTAGAATCAAAGTTTGTCTCTTA
* * * *
16026 AATAAGAGAAACATGAATAGTCATACTAATCCCCATTCTTTTCGGGATTAGGCAGCATAAA-GTA
193 AATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATA
* * * * *
16090 GTTTTCTCATAAGGATATGCAATACTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCTGCCAA
258 GTCTTCTCATAAGGATACGCGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCTACCAA
* * **
16155 TTTTTGTAAAGTCTAAGTTCGTGCCTCAAATCAGCCAAACATGGATTCTAGTTTTGATCTTCATT
323 TTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGCCAAACATGGATTCTAGTAATGATCTTCATT
* * ** *
16220 CATTTTGTGACTAAGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCT
388 CATTTTGTGATTAGGCACTATAAACACATTCTTTTCATTAGGATAAATGATATTGATGATTTTTT
*
16285 TTTACATGAAAATCTTTTCATT
453 TTTACATGAAAATCTTTTCTTT
* * * ** *
16307 GCCCTATTTTCCATAAAATCAAAGTTCATCCCTTAAA-AAGACAAAAAAT-GATTCTCGTAACT-
1 GCCCTATTTTCCTTAAAATCAAAGTTTACCCCTTAAATAAGAC-AAGCATCGATTCTCATAA-TA
* *
16369 GTCTCCATTCTTTTAAAGATTGGGAACCAAAACACATTCCCTTCGTTAGGATACATGACATTGAT
64 GTCTCCATTCTTTTCAAGATT-GGAACCAAAACACATTCCCTTCATTAGGATACATGACATTGAT
* * * * * *
16434 GCTTTGGTATCGCAAGAAAAGCTTTTCTTTCCACCG-TTCCTAATAGAATCAAGGTTAGCCTCTT
128 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGATT-TTATTAGAATCAAAGTTTGTCTCTT
* * *
16498 AAATAAGACAAACATGAATAGTCATACTAATACCTATTCTGTTT-AGGACTAGGCACCATAAACA
192 AAATAAGACAAACATGAATAGTCATACTAATCCCCATTCT-TTTCAGGATTAGGCACCATAAACA
* * * *
16562 TAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGCTTCGCAAAAAAGGCTTTCTTTTCT-C
256 TAGTCTTCTCATAAGGATACGCGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTT-TTTCCTAC
* *
16626 CAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAAAGAGCCAAAAATGGATTCTAGTAATGATCTTC
320 CAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGCCAAACATGGATTCTAGTAATGATCTTC
* * * * * *
16691 TTTCATTTTTTGATTAGGAACTATAAACACATTCTTTTTATTAGGATAAGTGATATCGATGATTT
385 ATTCATTTTGTGATTAGGCACTATAAACACATTCTTTTCATTAGGATAAATGATATTGATGATTT
16756 TCTTTTT-CATGAAAATCTTTT-TTT
450 T-TTTTTACATGAAAATCTTTTCTTT
** * * * *
16780 GCCCTATTTTCCTTAAAATCATTGTTTACCCATTAAATAAGACAAGCATCGATTTTTATAACAGT
1 GCCCTATTTTCCTTAAAATCAAAGTTTACCCCTTAAATAAGACAAGCATCGATTCTCATAATAGT
* * * * * * *
16845 CTCTATTATTTTCAGGATTGGGAACCTAAAACACATTCCTTTCATTAGGATACCTAACATTAATG
66 CTCCATTCTTTTCAAGATT-GGAACC-AAAACACATTCCCTTCATTAGGATACATGACATTGATG
* * *
16910 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTTCATC-ATTTT-TTATGTAATCAAAGTTTGTCTCAT
129 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGATTTTATTA-G-AATCAAAGTTTGTCTCTT
* * * *
16973 AAATAAGATAAACATGAATAGTCGTACTAATCCCCTTTCTTTTCAGAATTAGGCACCATAAACAT
192 AAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACAT
* * * * * * * *
17038 AGTCTTCTCATTAGGATACGTGATATTAATGTTTTGGTTTCACAAGAAAGGCATTTTTCCCACTA
257 AGTCTTCTCATAAGGATACGCGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCTACCA
* * * **
17103 ATTTTTGCAAAGTCTAAGTTTGTGCCTCAAATTAGACAAACCCGGATTCTAGTAATGATCTTCAT
322 ATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGCCAAACATGGATTCTAGTAATGATCTTCAT
* * *
17168 T-AGTTTTGTGATTAGGCATTATAAACACTTTATTTTCATTAGGATAAATGATATTGATGATTTT
387 TCA-TTTTGTGATTAGGCACTATAAACACATTCTTTTCATTAGGATAAATGATATTGATGATTTT
*
17232 TTTTTACGT-ATAAATCTTTTCTTT
451 TTTTTACATGA-AAATCTTTTCTTT
* ** * * * * *
17256 GCCTTATTTT-CTTGAAAATCAAAGTTTACCCAGTAAGTTAGTCAAGCATCGATTCTAATGATAG
1 GCCCTATTTTCCTT-AAAATCAAAGTTTACCCCTTAAATAAGACAAGCATCGATTCTCATAATAG
* *
17320 TC-CCTATTCTTTTCAAGATTGAGAACCAGAAACACATTCCCTTCATTAAGATACATGACATTAA
65 TCTCC-ATTCTTTTCAAGATTG-GAACCA-AAACACATTCCCTTCATTAGGATACATGACATTGA
* * * * * * *
17384 TGCTTTAGTGTCACAAGACAAGC-TTTCTTTCCACCGTTTTTAATAGAATCAAAATTTATCTCTT
127 TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGATTTTATTAGAATCAAAGTTTGTCTCTT
* * * *
17448 AAATAAGACAAACATGAATAGTTATACTAATCCCCATTCTTTTCAAGATCAGGCACAATAAACAT
192 AAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACAT
17513 AGTCTTCTCAT
257 AGTCTTCTCAT
17524 TACGCAATAT
Statistics
Matches: 2172, Mismatches: 362, Indels: 184
0.80 0.13 0.07
Matches are distributed among these distances:
454 1 0.00
456 163 0.08
457 3 0.00
460 53 0.02
461 151 0.07
462 3 0.00
463 3 0.00
466 1 0.00
469 1 0.00
471 2 0.00
472 66 0.03
473 145 0.07
474 543 0.25
475 734 0.34
476 138 0.06
477 2 0.00
478 6 0.00
479 157 0.07
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (474 bp):
GCCCTATTTTCCTTAAAATCAAAGTTTACCCCTTAAATAAGACAAGCATCGATTCTCATAATAGT
CTCCATTCTTTTCAAGATTGGAACCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCT
TTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGATTTTATTAGAATCAAAGTTTGTCTCTTAAAT
AAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTC
TTCTCATAAGGATACGCGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCTACCAATTT
TTGTAAAGTCTAAGTTTGTGCCTCAAATGAGCCAAACATGGATTCTAGTAATGATCTTCATTCAT
TTTGTGATTAGGCACTATAAACACATTCTTTTCATTAGGATAAATGATATTGATGATTTTTTTTT
ACATGAAAATCTTTTCTTT
Found at i:18493 original size:846 final size:843
Alignment explanation
Indices: 16812--18502 Score: 1984
Period size: 846 Copynumber: 2.0 Consensus size: 843
16802 TGTTTACCCA
* * * * *
16812 TTAAATAAGACAAGCATCGATTTTTATAACAGTCTCTATTATTTTCAGGATTGGGAACCTAAAAC
1 TTAAATAAGACAAGCATCGATTCTTATAACAATCTCCATTATTTTAAAGATTGGGAACCTAAAAC
* *
16877 ACATTCCTTTCATTAGGATACCTAACATTAATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTTCA
66 ACATTCCCTTCATTAGGATACCTAACATTAATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTCTCA
* * * * * * *
16942 TCATTTTTTATGTAATCAAAGTTTGTCTCATAAATAAGATAAACATGAATAGTCGTACTAATCCC
131 CCATTTTTGATGTAATCAAAATTTGTCTCATAAATAAAAAAAACATGAATACTCATACTAATCCC
* * * *
17007 CTTTCTTTTCAGAATTAGGCACCATAAACATAGTCTTCTCATTAGGATACGTGATATTAATGTTT
196 CCTTCTTTTCAGAATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTAATGCTT
* *** **
17072 TGGTTTCACAAGAAAGGCATTTTTCCCACTAATTTTTGCAAAGTCTAAGTTTGTGCCTCAAATTA
261 TGGTTTCACAAGAAAGGCATTTTTCCCACCAATTAAAGCAAAGTCTAAGTTTGTGCCTCAAAGGA
* * * * *
17137 GACAAACCCGGATTCTAGTAATGATCTTCATTAGTTTTGTGATTAGGCATTATAAACACTTTATT
326 GACAAACACGGATTCTAGTAATGATCTTCATTAGTTTTGTGATTAGGCACTACAAACACATTATC
* * * * *
17202 TTCATTAGGATAAATGATATTGATGATTTTTTTTTACGTATAAATCTTTTCTTTGCCTTATTTTC
391 CTCATTAGGATAAATGATATTGATAATTTTCTTTTACATATAAATCTTTTCTTTGCCCTATTTTC
* * * * *
17267 TTGAAAATCAAAGTTTACCCAGTAAGTTAGTCAAGCATCGATTCTAATGATAGTCCCTATTCTTT
456 TTGAAAATCAAAGTTCACCCAGAAAG-TAGTCAAGCATCAATTCTAATAACAGTCCCTATTCTTT
* *
17332 TCAAGATTGAGAACCAGAAACACATTCCCTTCATTAAGATACATGACATTAATGCTTTAGTGTCA
520 TCAAGATTGAGAACCAAAAACACATTCCCTTCATTAAGATACATAACATTAATGCTTTAGTGTCA
* *
17397 CAAGACAAGCTTTCTTTCCACCGTTTTTAATAGAATCAAAATTTATCTCTTAAATAAGACAAACA
585 CAAGAAAAGCTTTCTTTCCACCATTTTTAATAGAATCAAAATTTATCTCTTAAATAAGACAAACA
* * *
17462 TGAATAGTTATACTAATCCCCATTCTTTTCAAGATCAGGCACAATAAACATAGTCTTCTCATTAC
650 TGAATACTCATACTAATCCCCATTCTTTTCAAGATCAGGCACAATAAACATAGTCTTCTCATGAC
* * * ** *** *
17527 GCAATATTGAAGTTTTGGTTTTGCAATCCAGCCAATTTTTATAAAGTCTAAGTTCGTGCCTCAAA
715 GCAACAATGAAGCTTTGGTTCCGCAAGAAAGCCAA--TCTATAAAGTCTAAGTTCGTGCCTCAAA
* * *
17592 TAAGACAAACATGTATTTGATTAACGATCTTCATTCATTTATGATTGGACACTATAAGCACATTC
778 TAAGACAAACATGGATTTGAGTAACGATCTTCATTCATTTATGATTGGACACTATAAACACATTC
17657 C
843 C
*
17658 TTAAATAAGACAAGCATCGATTCTTGTAACAATCTCCATTATTTTAAAGATTGGGAACCTAAAAC
1 TTAAATAAGACAAGCATCGATTCTTATAACAATCTCCATTATTTTAAAGATTGGGAACCTAAAAC
* * * * *
17723 ACATTCCCTTCCTTAGGATACCTGACCTTGATGTTTTGGTGTCGCAAGAAAAGCTTTTC-TCTCT
66 ACATTCCCTTCATTAGGATACCTAACATTAATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTCTC-
* *
17787 ACCATTTTTGATAG-AATCAAAATTTGTCTCTTAAATAAAAAAAACATTAATACTCATACTAATC
130 ACCATTTTTGAT-GTAATCAAAATTTGTCTCATAAATAAAAAAAACATGAATACTCATACTAATC
* * *
17851 CCCCTTCTTTT-TGAGATTAGGCACTATAAACATAGTCTTCTCATAAGGATACATGATATTGATG
194 CCCCTTCTTTTCAGA-ATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTAATG
* *
17915 CTTTGG-TTCAGCAAGAAAGGCTTTTTTCCCACCAATTAAAGTAAA-TCTAAGTTCT-TGCCTCA
258 CTTTGGTTTCA-CAAGAAAGGCATTTTTCCCACCAATTAAAGCAAAGTCTAAGTT-TGTGCCTCA
** * * * **
17977 AAGGATCCAAACATGGATTCTAGTATTGATCTTCATTCA-TTTTTTGATTAGGCACTACAAATGC
321 AAGGAGACAAACACGGATTCTAGTAATGATCTTCATT-AGTTTTGTGATTAGGCACTACAAACAC
* * *
18041 ATTCTCCTCGTTAGGATAAATGATATTGATAATTTTCTTTTGCATGA-AAAT-TTTTACTTTGCC
385 ATTATCCTCATTAGGATAAATGATATTGATAATTTTCTTTTACAT-ATAAATCTTTT-CTTTGCC
** **
18104 CTATTTTGCTT-AAAATCAAAGTTCATCGCTTGAAA--AGAT-AAGCATCAATTCTCGTAACAGT
448 CTATTTT-CTTGAAAATCAAAGTTCA-C-CCAGAAAGTAG-TCAAGCATCAATTCTAATAACAGT
* * * *
18165 CTCC-ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCTTTAGGATGCATAACATTGAA
509 C-CCTATTCTTTTCAAGATTGAGAACCAAAAACACATTCCCTTCATTAAGATACATAACATT-AA
* * * ** * *
18229 -GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCTACCATTTTTGGTAGAATCAAAGTTTGTCTCTT
572 TGCTTTAGTGTCACAAGAAAAGC-TTTCTTTCCACCATTTTTAATAGAATCAAAATTTATCTCTT
* * * ** ***
18293 AAATAAGACAAACATGAATACTCATACTAGTCTCCATT-TTTTTAAGATTGGGCGTTATAAACAT
636 AAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAAGATCAGGCACAATAAACAT
* * * *
18357 AGTCTTCTCATGAGGATACATGACAATGATGCTTTGGTTCCGCAAGAAAGGC-A-CTATAAAGTT
701 AGTCTTCTCATGACG---CA--ACAATGAAGCTTTGGTTCCGCAAGAAAGCCAATCTATAAAGTC
* * * *
18420 TAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTG-GTAATGATCCTT-ATTCATTTTGTGAT
761 TAAGTTCGTGCCTCAAATAAGACAAACATGGATT-TGAGTAACGAT-CTTCATTCA-TTTATGAT
18483 TAGG-CACTATAAACACATTC
823 T-GGACACTATAAACACATTC
18503 TTTTCATTAG
Statistics
Matches: 709, Mismatches: 112, Indels: 48
0.82 0.13 0.06
Matches are distributed among these distances:
844 127 0.18
845 264 0.37
846 288 0.41
847 9 0.01
848 1 0.00
849 20 0.03
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (843 bp):
TTAAATAAGACAAGCATCGATTCTTATAACAATCTCCATTATTTTAAAGATTGGGAACCTAAAAC
ACATTCCCTTCATTAGGATACCTAACATTAATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTCTCA
CCATTTTTGATGTAATCAAAATTTGTCTCATAAATAAAAAAAACATGAATACTCATACTAATCCC
CCTTCTTTTCAGAATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTAATGCTT
TGGTTTCACAAGAAAGGCATTTTTCCCACCAATTAAAGCAAAGTCTAAGTTTGTGCCTCAAAGGA
GACAAACACGGATTCTAGTAATGATCTTCATTAGTTTTGTGATTAGGCACTACAAACACATTATC
CTCATTAGGATAAATGATATTGATAATTTTCTTTTACATATAAATCTTTTCTTTGCCCTATTTTC
TTGAAAATCAAAGTTCACCCAGAAAGTAGTCAAGCATCAATTCTAATAACAGTCCCTATTCTTTT
CAAGATTGAGAACCAAAAACACATTCCCTTCATTAAGATACATAACATTAATGCTTTAGTGTCAC
AAGAAAAGCTTTCTTTCCACCATTTTTAATAGAATCAAAATTTATCTCTTAAATAAGACAAACAT
GAATACTCATACTAATCCCCATTCTTTTCAAGATCAGGCACAATAAACATAGTCTTCTCATGACG
CAACAATGAAGCTTTGGTTCCGCAAGAAAGCCAATCTATAAAGTCTAAGTTCGTGCCTCAAATAA
GACAAACATGGATTTGAGTAACGATCTTCATTCATTTATGATTGGACACTATAAACACATTCC
Found at i:20121 original size:474 final size:473
Alignment explanation
Indices: 18960--21236 Score: 2642
Period size: 474 Copynumber: 4.8 Consensus size: 473
18950 TTGTTATTAG
* * * ** * *
18960 GCCCTATTTTCCATAAAATGAAAGTTCATCCTTTAAATAAGACAAATATCAATTCTCCTAACA-A
1 GCCCTATTTTCCTTAAAATCAAAGTTCA-CCCTTAAATAAGACAAGCATCGATTCTCATAACAGA
* * *
19024 TCCCCATTCTTTTCATGATTGGGAACGAAAAACACATTTCCTTCATTAGGATACATGACATTGAT
65 -CTCCATTCTTTTCAAGATTGGGAACCAAAAACACA-TTCCTTCATTAGGATACATGACATTGAT
* ** *** * *
19089 GCTTTGGTGTCATAAGAAAAGCTTTTCTTTCCATTGTTTTTGATAGAATCGAAGTTTGTCACTTA
128 GCTTTAGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTA
* * * *
19154 AATAAGACAAACATGAATAGTCACACTAATCCCCATTATTTTCAGGATTAGGCACCATAAACATT
193 AATAAGACAAACATGAATACTCATACTAAT-CCCATTCTTTTCAGGATTAGGCACCATAAACATA
* * * * *
19219 CTCTTCTCATTAGGATACGCGATATTGATGTTTTGGTTATGCAAGAAAGGC-ATTTTCCCACCAA
257 GTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTCT-CAAGAAAGGCTTTTTTCCCACCAA
* * *
19283 TTTTTGTAAAGTCTAAGTTCCTGCCTCAAATGAGGCAAACATGGATTCTAGTAATGATCTTTATT
321 TTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGCCAAACATGGATTCTAGTAATGATCTTCATT
* * * *
19348 CATTTTGAGATTAGGCACTAT-AAGTATATTGTCCTT-ATTAGG-TAAATGATATTAATGATTTT
386 CATTTTGAGATTAGGCACTATAAAGCACATTCT-CTTCATTAGGATAAATGATATTGATGATTTT
* *
19410 CTTTTTCAT-AGAAATTTTTTCTTT
450 CTTTTGCATGA-AAATCTTTTCTTT
* * * *
19434 GCCCTATTTTCC-TAAAATCAAAGTTCATCCCTT-AATAAGACAAGCATCGATCCTCGTAATAGT
1 GCCCTATTTTCCTTAAAATCAAAGTTCA-CCCTTAAATAAGACAAGCATCGATTCTCATAACAGA
* ** * * * *
19497 CTAC-GCCATTTTCAAGATTGGGAACCCAAAACATATTCCCTTCATCAAGATACATGACATTGAT
65 CTCCATTC-TTTTCAAGATTGGGAACCAAAAACACATT-CCTTCATTAGGATACATGACATTGAT
* * *** *
19561 GCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACTGGTTTTGATAGAATCAAAGTTTGTCTTTTA
128 GCTTTAGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTA
* *
19626 AAT--GACAGGAACATGAATACTCATACTAATCCTATTCTTTTCAGGATTAGGCACCATAAATAT
193 AATAAGACA--AACATGAATACTCATACTAATCCCATTCTTTTCAGGATTAGGCACCATAAACAT
* * * * *
19689 AGTTTTCTCTTTAGGATACACGATATTGATGATTTGGTTCCTCAAGAAAAGCTTTTTTCCTACCA
256 AGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTT-CTCAAGAAAGGCTTTTTTCCCACCA
* * * * *
19754 ATTTTTGCAAAGTCTAAGTTCTTACCTCAAATGAGGCAAACATAGATTCTAGTAATGATCTTCAT
320 ATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGCCAAACATGGATTCTAGTAATGATCTTCAT
* *
19819 TCATTTTGAGATTAGGCACTA-AAAGCACATTCTCATCTTTAGGATAAATGATATTGATGATTTT
385 TCATTTTGAGATTAGGCACTATAAAGCACATTCTCTTCATTAGGATAAATGATATTGATGATTTT
*
19883 CTTTTGCATGGAAATCTTTTCTTT
450 CTTTTGCATGAAAATCTTTTCTTT
* * * *
19907 GCCTTATTTTTC-TAAAATCAATGTTCACACCTTAAATAAGACAAGCATCAATTCTCATAACAGA
1 GCCCTATTTTCCTTAAAATCAAAGTTCAC-CCTTAAATAAGACAAGCATCGATTCTCATAACAGA
* * * *
19971 CTCCATTATTTTCAAGATTGGGAACCTAAAACACATTCCTGTCGTTAAGATACATGACATTGATG
65 CTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCT-TCATTAGGATACATGACATTGATG
* * *
20036 CTTTAGTGTCGCAAGCAAAGCTTTTCTCTCCACCATTTTTGATAGAATCAAAGTTTGTCTTTTAA
129 CTTTAGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAA
* * * * * *
20101 ATAAAACAAACTTTAATACTCATAGTAATCCTCATGCTTTTCAAGATTAGGCACCATAAACATAG
194 ATAAGACAAACATGAATACTCATACTAATCC-CATTCTTTTCAGGATTAGGCACCATAAACATAG
* * * *
20166 TCTTCTCATTAGGATACGCGATATTGATGTTTTGGTTTCGCAAGAAAGGCCTTTTTT-CCTCCAA
258 TCTTCTCATTAGGATACACGATATTGATGCTTTGG-TTCTCAAGAAAGG-CTTTTTTCCCACCAA
* * * * * *
20230 -TTTTGTAAAATCTAAGTTAATGCCTCAAATAAGACAGACATGAATTCTAGTAATGATCTTCATT
321 TTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGCCAAACATGGATTCTAGTAATGATCTTCATT
* * * *
20294 -AGTTTTGTGATTAGGCACTATAAAGAAC-TTATTTTCATTAGGATAAATGATATTGATGATTTT
386 CA-TTTTGAGATTAGGCACTATAAAGCACATTCTCTTCATTAGGATAAATGATATTGATGATTTT
* *
20357 ATTTTGCGTGAAAATCTTTTCTTT
450 CTTTTGCATGAAAATCTTTTCTTT
* * **
20381 GCCCTATTTTCCTTAAAATCAAAGTAT-ACCCCTTAAATTAGACAGGCATCGATTCTTGTAACAG
1 GCCCTATTTTCCTTAAAATCAAAGT-TCA-CCCTTAAATAAGACAAGCATCGATTCTCATAACAG
* * * **
20445 TCTCCATTCTTTTCAAGATTGGGAACTAGAAACACATTCCCTTCATTAGGATACACAACATTGAT
64 ACTCCATTCTTTTCAAGATTGGGAACCAAAAACACATT-CCTTCATTAGGATACATGACATTGAT
* *
20510 GCTTTA-AGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTA
128 GCTTTAGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTA
* * * *
20574 AATAAGACAAGTCA--AA-A-TGAT-C----CCCATTCTTTTC-GTGATTAGGCAGCATAAACGT
193 AATAAGACAA-ACATGAATACTCATACTAATCCCATTCTTTTCAG-GATTAGGCACCATAAACAT
* * * * * * *
20629 AGTCTTTTGATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCC
256 AGTCTTCTCATTAGGATACACGATATTGATGCTTTGG-TTCTCAAGAAAGGCTTTTTTCCCACCA
* *
20694 ATTTTTGTAAACTCTAAGTTCATGCCTCAAATGAGCCAAACATGGATTCTAGTATTGATCTTCAT
320 ATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGCCAAACATGGATTCTAGTAATGATCTTCAT
** *
20759 TCATTTTCTGACTAGGCACTATAAA-CACATTCTCTTCATTAGGATAAATGATATTGATGATTTT
385 TCATTTTGAGATTAGGCACTATAAAGCACATTCTCTTCATTAGGATAAATGATATTGATGATTTT
20823 CTTTTGCATGAAAATCTTTTCTTT
450 CTTTTGCATGAAAATCTTTTCTTT
* * *
20847 GCCCTATTTTCCTTAAAATCAAAGTTCATTCCTTAGA-AAGACAAGCATTGATTCTCATAACA-A
1 GCCCTATTTTCCTTAAAATCAAAGTTCA-CCCTTAAATAAGACAAGCATCGATTCTCATAACAGA
* * * * * * *
20910 TCTCCATTCTTTTCAAGATTGGGAATCAAAAAGACATCCCCTTCGTTAGGATACACGTCATAGAT
65 -CTCCATTCTTTTCAAGATTGGGAACCAAAAACACAT-TCCTTCATTAGGATACATGACATTGAT
** * *
20975 GCTTTAGTGTCGCAAGAAAATATTTTCTTTCCACC-GTTTTGATAGAATCAAAGTTTGCCTCTTA
128 GCTTTAGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTA
* * * * *
21039 AATAAGACAAACATGAGTAGTCATACTAATCCCCATTCTTTTCAAGACTAGGCACCATAAACATT
193 AATAAGACAAACATGAATACTCATACTAAT-CCCATTCTTTTCAGGATTAGGCACCATAAACATA
* * * * *
21104 GTCTTCTCATAAAGATACA-GATATTGATGCTTTGGTTTTGCATGAAAGGCTTTCTTCCCACCAA
257 GTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTCT-CAAGAAAGGCTTTTTTCCCACCAA
** * *
21168 TTTTTGTAAAGTCTAAGTTTGTGCCTCAAAAGAGCCAAAAATGGATTCTAGTAATGATCTTCATT
321 TTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGCCAAACATGGATTCTAGTAATGATCTTCATT
21233 CATT
386 CATT
21237 CTAGTAAACA
Statistics
Matches: 1546, Mismatches: 209, Indels: 97
0.83 0.11 0.05
Matches are distributed among these distances:
464 8 0.01
465 197 0.13
466 192 0.12
467 2 0.00
468 3 0.00
469 1 0.00
470 4 0.00
471 80 0.05
472 261 0.17
473 193 0.12
474 408 0.26
475 180 0.12
476 17 0.01
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (473 bp):
GCCCTATTTTCCTTAAAATCAAAGTTCACCCTTAAATAAGACAAGCATCGATTCTCATAACAGAC
TCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTCATTAGGATACATGACATTGATGCT
TTAGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
AAGACAAACATGAATACTCATACTAATCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCT
TCTCATTAGGATACACGATATTGATGCTTTGGTTCTCAAGAAAGGCTTTTTTCCCACCAATTTTT
GTAAAGTCTAAGTTCATGCCTCAAATGAGCCAAACATGGATTCTAGTAATGATCTTCATTCATTT
TGAGATTAGGCACTATAAAGCACATTCTCTTCATTAGGATAAATGATATTGATGATTTTCTTTTG
CATGAAAATCTTTTCTTT
Found at i:20803 original size:158 final size:156
Alignment explanation
Indices: 19022--24911 Score: 981
Period size: 158 Copynumber: 37.4 Consensus size: 156
19012 TTCTCCTAAC
* * * * * * *
19022 AATCCCCATTCTTTTCATGATTGGGAACGAAAAACACATT-TCCTTCATTAGGATACATGACATT
1 AATCTCCATTCTTTTCATGACTAGGCACTATAAACACATTCT-CTTCATTAGGATACATGATATT
* ** *** *
19086 GATGCTTTGGTGTCATAAGAAAAGCTTTTCTTTCCA-TTGTTTTTGATAGAATCGAAGTT--TGT
65 GATGCTTTGGTTTCGCAAGAAAAGC-TTTCTTTCCACCCATTTTTG-TA-AATCAAAGTTCATG-
* * *
19148 CACTTAAATAAGACAAACATGAATAGTC-ACACT
126 C-CTCAAATAAGACAAACATGGAT--TCTATACT
* * * * * **
19181 AATCCCCATTATTTTCAGGATTAGGCACCAT-AA-ACATTCTCTTCTCATTAGGATACGCGATAT
1 AATCTCCATTCTTTTCATGACTAGGCACTATAAACACATTCTC-T-TCATTAGGATACATGATAT
* * * * * * *
19244 TGATGTTTTGGTTAT-GCAAGAAAGGCATT-TTCCCACCAATTTTTGTAAAGTCTAAGTTCCTGC
64 TGATGCTTTGGTT-TCGCAAGAAAAGCTTTCTTTCCACCCATTTTTGTAAA-TCAAAGTTCATGC
* * *
19307 CTCAAATGAGGCAAACATGGATTCTAGTAAT
127 CTCAAATAAGACAAACATGGATTCTA-TACT
* ** * * ** * * *
19338 GATCTTTATTCATTTTGA-GATTAGGCACTATAAGTATATTGTCCTT-ATTAGG-TAAATGATAT
1 AATCTCCATTC-TTTTCATGACTAGGCACTATAAACACATTCT-CTTCATTAGGATACATGATAT
* * ** ** *** * * ** *
19400 TAATGATTTTCTTTTTCATAGAAATTTTTTCTTTGC-CCTATTTTCCTAAAATCAAAGTTCATCC
64 TGATGCTTTGGTTTCGCA-AGAAAAGCTTTCTTTCCACCCATTTTTGT-AAATCAAAGTTCATGC
* * * * * *
19464 CT-TAATAAGACAAGCATCGATCCTCGTAAT
127 CTCAAATAAGACAAACATGGATTCT-ATACT
* * ** * * * * * * * * * *
19494 AGTCTAC-GCCATTTTCAAGATTGGGAACCCA-AAACATATTCCCTTCATCAAGATACATGACAT
1 AATCTCCATTC-TTTTCATGACTAGGCA-CTATAAACACATTCTCTTCATTAGGATACATGATAT
* * ***
19557 TGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCA-CTGGTTTTGATAGAATCAAAGTT--TG
64 TGATGCTTTGGTTTCGCAAGAAAAGC-TTTCTTTCCACCCATTTTTG-TA-AATCAAAGTTCATG
* * * *
19619 TCTTTTAAAT--GACAGGAACATGAATACTCATACT
126 -C-CTCAAATAAGACA--AACATGGATTCT-ATACT
* * * * * * * * *
19653 AATC-CTATTCTTTTCAGGATTAGGCACCATAAATATAGTTTTC-TCTTTAGGATACACGATATT
1 AATCTCCATTCTTTTCATGACTAGGCACTATAAACACA-TTCTCTTCATTAGGATACATGATATT
* * * * * * * *
19716 GATGATTTGGTTCCTCAAGAAAAGCTTT-TTTCCTACCAATTTTTGCAAAGTCTAAGTTCTTACC
65 GATGCTTTGGTTTCGCAAGAAAAGCTTTCTTTCC-ACCCATTTTTGTAAA-TCAAAGTTCATGCC
* * * *
19780 TCAAATGAGGCAAACATAGATTCTAGTAAT
128 TCAAATAAGACAAACATGGATTCTA-TACT
* * * * * * *
19810 GATCTTCATTCATTTTGA-GATTAGGCACTA-AAAGCACATTCTCATCTTTAGGATAAATGATAT
1 AATCTCCATTC-TTTTCATGACTAGGCACTATAAA-CACATTCTCTTCATTAGGATACATGATAT
* ** * * * * * ** * * **
19873 TGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC-CTTATTTTTCTAAAATCAATGTTCACAC
64 TGATGCTTTGGTTTCGCAAGAAAAGC-TTTCTTTCCACCCATTTTTGT-AAATCAAAGTTCATGC
* * **
19937 CTTAAATAAGACAAGCATCAATTCTCATAAC-
127 CTCAAATAAGACAAACATGGATTCT-AT-ACT
* * * * * * * *
19968 AGA-CTCCATTATTTTCAAGATTGGGAACCTA-AAACACATTC-CTGTCGTTAAGATACATGACA
1 A-ATCTCCATTCTTTTCATGACTAGGCA-CTATAAACACATTCTCT-TCATTAGGATACATGATA
* * * *
20030 TTGATGCTTTAGTGTCGCAAGCAAAGCTTTTCTCTCCA-CCATTTTTGATAGAATCAAAGTT--T
63 TTGATGCTTTGGTTTCGCAAGAAAAGC-TTTCTTTCCACCCATTTTTG-TA-AATCAAAGTTCAT
* * * * ** * *
20092 GTCTTTTAAATAAAACAAACTTTAATACTCATAGT
125 G-C-CTCAAATAAGACAAACATGGATTCT-ATACT
* * * * * * **
20127 AATC-CTCATGCTTTTCAAGATTAGGCACCATAAACATAGTCT-TCTCATTAGGATACGCGATAT
1 AATCTC-CATTCTTTTCATGACTAGGCACTATAAACACATTCTCT-TCATTAGGATACATGATAT
* * * * * *
20190 TGATGTTTTGGTTTCGCAAGAAAGGCCTTT-TTTCC-TCCAATTTTGTAAAATCTAAGTTAATGC
64 TGATGCTTTGGTTTCGCAAGAAAAG-CTTTCTTTCCACCCATTTTTGT-AAATCAAAGTTCATGC
* * *
20253 CTCAAATAAGACAGACATGAATTCTAGTAAT
127 CTCAAATAAGACAAACATGGATTCTA-TACT
* * * * * * * * *
20284 GATCTTCATTAGTTTT-GTGATTAGGCACTATAAAGA-ACTTATTTTCATTAGGATAAATGATAT
1 AATCTCCATT-CTTTTCATGACTAGGCACTATAAACACA-TTCTCTTCATTAGGATACATGATAT
* ** * ** * * *
20347 TGATGATTTTATTTTGCGTGAAAATCTTTTCTTTGC-CCTATTTTCCT-TAAAATCAAAGTAT-A
64 TGATGCTTTGGTTTCGCAAGAAAAGC-TTTCTTTCCACCCATTTT--TGT-AAATCAAAGT-TCA
** * * ** * *
20409 CCCCTTAAATTAGACAGGCATCGATTCTTGTAAC-
124 TGCCTCAAATAAGACAAACATGGATTC-TAT-ACT
* * * * * * * ** *
20443 AGTCTCCATTCTTTTCAAGATTGGGAACTAGAAACACATTCCCTTCATTAGGATACACAACATTG
1 AATCTCCATTCTTTTCATGACTAGGCACTATAAACACATTCTCTTCATTAGGATACATGATATTG
*
20508 ATGCTTTAAG--TCGCAAGAAAAGCTTTTCTTTCCA-CCATTTTTGATAGAATCAAAGTT--TGC
66 ATGCTTT-GGTTTCGCAAGAAAAGC-TTTCTTTCCACCCATTTTTG-TA-AATCAAAGTTCATGC
* *
20568 CTCTTAAATAAGAC--A-A--G--TC-AAAAT
127 CTC--AAATAAGACAAACATGGATTCTATACT
* * * * ** * * * *
20592 GATCCCCATTCTTTTCGTGATTAGGCAGC-ATAAACGTAGTCTTTTGATAAGGATACATGATATT
1 AATCTCCATTCTTTTCATGACTAGGCA-CTATAAACACATTCTCTTCATTAGGATACATGATATT
* * *
20656 GATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCCATTTTTGTAAACTCTAAGTTCATGCCT
65 GATGCTTTGGTTTCGCAAGAAAAGCTTTCTTTCCACCCATTTTTGTAAA-TCAAAGTTCATGCCT
* * *
20721 CAAATGAGCCAAACATGGATTCTAGTATT
129 CAAATAAGACAAACATGGATTCTA-TACT
* * *
20750 GATCTTCATTCATTTTC-TGACTAGGCACTATAAACACATTCTCTTCATTAGGATAAATGATATT
1 AATCTCCATTC-TTTTCATGACTAGGCACTATAAACACATTCTCTTCATTAGGATACATGATATT
* ** * * * * * *
20814 GATGATTTTCTTTTGCATGAAAATCTTTTCTTTGC-CCTATTTTCCT-TAAAATCAAAGTTCATT
65 GATGCTTTGGTTTCGCAAGAAAAGC-TTTCTTTCCACCCATTTT--TGT-AAATCAAAGTTCATG
* * * *
20877 CCTTAGA-AAGACAAGCATTGATTCTCATAAC-
126 CCTCAAATAAGACAAACATGGATTCT-AT-ACT
* * * * * * * * * *
20908 AATCTCCATTCTTTTCAAGA-TTGGGAATCAAAAAGACATCCCCTTCGTTAGGATACACG-TCAT
1 AATCTCCATTCTTTTCATGACTAGGCACT-ATAAACACATTCTCTTCATTAGGATACATGAT-AT
* * * ** *
20971 AGATGCTTTAGTGTCGCAAGAAAATATTTTCTTTCCA-CC-GTTTTGATAGAATCAAAGTT--TG
64 TGATGCTTTGGTTTCGCAAGAAAA-GCTTTCTTTCCACCCATTTTTG-TA-AATCAAAGTTCATG
*
21032 CCTCTTAAATAAGACAAACATGAGTAGTC-ATACT
126 CCTC--AAATAAGACAAACATG-G-ATTCTATACT
* * * * * *
21066 AATCCCCATTCTTTTCAAGACTAGGCACCAT-AA-ACATTGTCTTCTCATAAAGATACA-GATAT
1 AATCTCCATTCTTTTCATGACTAGGCACTATAAACACATTCTC-T-TCATTAGGATACATGATAT
* * * * * * **
21128 TGATGCTTTGGTTTTGCATGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCC
64 TGATGCTTTGGTTTCGCAAGAAAAGCTTTCTTTCCACCCATTTTTGTAAA-TCAAAGTTCATGCC
* * *
21193 TCAAA-AGAGCCAAAAATGGATTC--TAGT
128 TCAAATA-AGACAAACATGGATTCTATACT
* * * * *
21220 AATGAT-C-TTC-ATTCAT-TCTA-G-----TAAACACATTCCCTTCATTAGGATACATGACACA
1 AAT-CTCCATTCTTTTCATGACTAGGCACTATAAACACATTCTCTTCATTAGGATACATG--ATA
** * * * * *
21275 TACATGCTTTGGTGTCACAAGAAAAGCTTTTATTTCCA-CCTTTTTTGATAGAATCAAAGTTTAT
63 TTGATGCTTTGGTTTCGCAAGAAAAGC-TTTCTTTCCACCCATTTTTG-TA-AATCAAAGTTCAT
* * * * * *
21339 -CTTTTAAATAAGACAAACTTGAATACTCATACC
125 GC-CTCAAATAAGACAAACATGGATTCT-ATACT
* ** * * ** * * *
21372 AATCCCCATTCTTTTCGGGATTAGGCACCATAAACTTAGTC-CTTATCATTGGGATACACGATAT
1 AATCTCCATTCTTTTCATGACTAGGCACTATAAACACATTCTC-T-TCATTAGGATACATGATAT
* *
21436 TGATGCTTTGGTTTCGCAAGAGAAGC-TT-TTTCCACTCCAATTTTTGTAAAGTCTAAGTTCATG
64 TGATGCTTTGGTTTCGCAAGAAAAGCTTTCTTTCCAC-CC-ATTTTTGTAAA-TCAAAGTTCATG
* * * *
21499 CCTTAAATTAGATAAACATGGTTTCTAGTACT
126 CCTCAAATAAGACAAACATGGATTCTA-TACT
* * * * * *
21531 AATCTTCATTCATTTT-GTGATTAGGCACTATAAGCACATTCTCCTCATTAGGATAAATGATATT
1 AATCTCCATTC-TTTTCATGACTAGGCACTATAAACACATTCTCTTCATTAGGATACATGATATT
* * * * * * * *
21595 GATGATTTTCGTTT-GTATGAAAATCTTTTCTTTGC-CCTATTTTCCT-TAAAATCAAAGCTCAT
65 GATG-CTTTGGTTTCGCAAGAAAAGC-TTTCTTTCCACCCATTTT--TGT-AAATCAAAGTTCAT
* * ** *
21657 -CTCTCAAATAAGATAAACATCGATTCTCGCAAT
125 GC-CTCAAATAAGACAAACATGGATTCT-ATACT
* * * * * * * *
21690 AGTCTCCATTATTTTCAGGATTGGGAACCTA-AAACATATTCCCTTCATTAGGATACATGACTCA
1 AATCTCCATTCTTTTCATGACTAGGCA-CTATAAACACATTCTCTTCATTAGGATACATGA-T-A
** * ** * * * **
21754 TACATGCTTTGGTGTCATAAGGAAAGCTTTTCTTTCCA-TCGTTTTTGATAGAATCAAAGTTTTT
63 TTGATGCTTTGGTTTCGCAAGAAAAGC-TTTCTTTCCACCCATTTTTG-TA-AATCAAAGTTCAT
* * * ** * * * *
21818 TCTGTTAAATAAGACAAAGTTGAATACTCAAACC
125 GC-CTCAAATAAGACAAACATGGATTCT-ATACT
* * * * ** * *
21852 AATCCCCACTCTTTTCGA-GATTAGGCACCATAAACTTAGTGT-TC-TCATTGGGATACATGATG
1 AATCTCCATTCTTTTC-ATGACTAGGCACTATAAACACA-T-TCTCTTCATTAGGATACATGATA
* * * * * * * * *
21914 CTAATGCTTTGGTTTTGCAAGAAAGGCTTT-TTCCCCACCAATTTTTATAAAGTCTAAGTTCGTG
63 TTGATGCTTTGGTTTCGCAAGAAAAGCTTTCTT-TCCACCCATTTTTGTAAA-TCAAAGTTCATG
* * * *
21978 TCTCAGAA-GAGACAAACATGTATTCTAGTAAT
126 CCTCA-AATAAGACAAACATGGATTCTA-TACT
* * * * * * * ** *
22010 GATC-CTTATTCATTTT-GTGATTAGGCTCTATAAGCAGATTCTC--C-TCGGGATTA-GTGATA
1 AATCTC-CATTC-TTTTCATGACTAGGCACTATAAACACATTCTCTTCATTAGGA-TACATGATA
* * ** * ** * * * ** *
22069 TTGAAGATTTTCTTTTGCGCGAAAATCTTTTCTTTGC-CCTATTTTCCCTAAAATCAAAGTTTAT
63 TTGATGCTTTGGTTTCGCAAGAAAAGC-TTTCTTTCCACCCATTTT-TGT-AAATCAAAGTTCAT
** * ** *
22133 -CTCTTTAATAAGACAAGCATCAATTCTTGTAC-
125 GC-CTCAAATAAGACAAACATGGATTC-TATACT
* * * * * * * * * **
22165 CATCCCCTTTCCTTTCAAGATTAGGAACCA-AAACCACATTC-CATTCATTAGGATGCACAACT-
1 AATCTCCATTCTTTTCATGACTAGGCACTATAAA-CACATTCTC-TTCATTAGGATACATGA-TA
** **
22227 TTGATGCTTTGGCATCGCAAGAAAAGCTTTTCTTTCCA-CCATTTTTGATACAAAGAAAGTT--T
63 TTGATGCTTTGGTTTCGCAAGAAAAGC-TTTCTTTCCACCCATTTTTG-TA-AATCAAAGTTCAT
* * *
22289 GCCTCTTAAATAAGATAAGCATGAATAATC-ATACT
125 GCCTC--AAATAAGACAAACATGGAT--TCTATACT
* *** * * * * *
22324 AATCCCCATTCTTTTTGGGATTAGGTACCAT-AA-ACATTGTCTTCTCTTTAGGATACATGATAT
1 AATCTCCATTCTTTTCATGACTAGGCACTATAAACACATTCTC-T-TCATTAGGATACATGATAT
* * * * * * *
22387 TGATGCTTTGGTTTCTCTAGAAAGGCTTT-TTCCCTACCAATTTTTGTAAAGTCTAAGCTT-GTG
64 TGATGCTTTGGTTTCGCAAGAAAAGCTTTCTTTCC-ACCCATTTTTGTAAA-TCAAAG-TTCATG
* ** * *
22450 CCTCATACGAGAGAAACATGGATTCTAGTAAT
126 CCTCAAATAAGACAAACATGGATTCTA-TACT
* * * * *
22482 GATCTTCATTCATTTT-ATGATTAGGCACTATAAGCACATTCT-TCTCATTAGGATAAATGATAT
1 AATCTCCATTC-TTTTCATGACTAGGCACTATAAACACATTCTCT-TCATTAGGATACATGATAT
** ** * * * * *
22545 TGATGACTTTCTTTTC-CCCGGAAATCTTTTCTTTGC-CCTATTTTCCT-TCAAATCAAAGCTCA
64 TGATG-CTTTGGTTTCGCAAGAAAAGC-TTTCTTTCCACCCATTTT--TGT-AAATCAAAGTTCA
* * * * * * *
22607 TCCCAT-AAATATGGCAAGCATCGATTCTCGTAAT
124 TGCC-TCAAATAAGACAAACATGGATTCT-ATACT
* ** * * * * * * * *
22641 AGTCTCCATAATTTTCAGGATTGGGAACCTA-AAACACAATCCCTTCACTAGGATACATGCCACA
1 AATCTCCATTCTTTTCATGACTAGGCA-CTATAAACACATTCTCTTCATTAGGATACATG--ATA
** * * * *
22705 TACATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCA-CCGTTTTTGATAGAATCAAAGTT--TG
63 TTGATGCTTTGGTTTCGCAAGAAAAGCTTTCTTTCCACCCATTTTTG-TA-AATCAAAGTTCATG
* * * *
22767 TCTCTGAAATAAGACAAGC-TTGAGTACTCATA-T
126 -C-CTCAAATAAGACAAACATGGA-TTCT-ATACT
* * * * * * * *
22800 CAGTAC-CCATTCTTTTCGA-GATTTGGCACCATAAACTCAATCT-TCTCATTGGGATACACGAT
1 -AAT-CTCCATTCTTTTC-ATGACTAGGCACTATAAACACATTCTCT-TCATTAGGATACATGAT
* * * ** * * *
22862 ACTAATGCTTTGGTTTCACAAG-AAAGGGTT-TTTCCTTACCAATTTTTATAAAGTCTAAGTTCA
62 ATTGATGCTTTGGTTTCGCAAGAAAAGCTTTCTTTCC--ACCCATTTTTGTAAA-TCAAAGTTCA
* * * * *
22925 CGCCTCAAATGAGATAAACATAGATTCTAGTAAT
124 TGCCTCAAATAAGACAAACATGGATTCTA-TACT
* ** * * * * *
22959 GATCTTTATTCATTTT-GTGATTAGGCACTATAAGCACATTCTCCTCAATAGGATA-AGTGATAT
1 AATCTCCATTC-TTTTCATGACTAGGCACTATAAACACATTCTCTTCATTAGGATACA-TGATAT
* * * ** * *
23022 TGATGATTT-TTTTTGCTTGGAAATCTTTTCTTT--ACCCTATTTTCCT-TAAAATCAAAGTTCA
64 TGATGCTTTGGTTTCGCAAGAAAAGC-TTTCTTTCCACCC-ATTTT--TGT-AAATCAAAGTTCA
* * *
23083 TCCCTTAAATAAGACAAACATCGATTCTCATAAC-
124 TGCCTCAAATAAGACAAACATGGATTCT-AT-ACT
* * * * * * *
23117 AGTCTTCATTATTTTCAAGA-TTGGGATCCTA-AAACACATT-TCCTTTATTAGGATACATGACG
1 AATCTCCATTCTTTTCATGACTAGGCA--CTATAAACACATTCT-CTTCATTAGGATACATGA--
* ** * **
23179 CATACATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA-CTGTTTTTGATAGAATCAAAGTT-
61 TATTGATGCTTTGGTTTCGCAAGAAAAGC-TTTCTTTCCACCCATTTTTG-TA-AATCAAAGTTC
* * * * *
23242 -TGTCTCTTAAATAAGACAAACTTGAATACTCATACC
123 ATG-C-CTCAAATAAGACAAACATGGATTCT-ATACT
* * * ** * * *
23278 AATAC-CCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCT-TCTCATTTGGATACATGATAC
1 AAT-CTCCATTCTTTTCATGACTAGGCACTATAAACACATTCTCT-TCATTAGGATACATGATAT
* * * * * * * * *
23341 TAATGCTTTCGTTTCGCAAGAAAGGC--T-TTT-C-CCTACTTTTTATAAAGTCTACGTTCGTTC
64 TGATGCTTTGGTTTCGCAAGAAAAGCTTTCTTTCCACCCA-TTTTTGTAAA-TCAAAGTTCATGC
* *
23401 CTCAAGTGAGACAAACATGGATTCTAGTAAC-
127 CTCAAATAAGACAAACATGGATTCTA-T-ACT
* * * * * * *
23432 GATCTTCATTCACTTT-GTGATTAGGCACCATAAGCACATTCTCTTCATTAGGATA-AGTGATAT
1 AATCTCCATTC-TTTTCATGACTAGGCACTATAAACACATTCTCTTCATTAGGATACA-TGATAT
* ** * * * * * *
23495 TGATGATTTTTTTTTGCATGGAAATCTTT-TCTTCGC-TCTATTTTCCT-TAAAATCAAAGTTCA
64 TGATGCTTTGGTTTCGCAAGAAAAGCTTTCT-TTC-CACCCATTTT--TGT-AAATCAAAGTTCA
* * * * *
23557 TCCCTTAAATAAGACAAACATCGATTTTCATATT
124 TGCCTCAAATAAGACAAACATGGATTCT-ATACT
* * * * * * * * * *
23591 AGTCTCCATTATTTTCAGGA-TTGGGATCCAAAAACACATTCCCTTCACTAGGATACATGACATA
1 AATCTCCATTCTTTTCATGACTAGGCA-CTATAAACACATTCTCTTCATTAGGATACATGATAT-
* * * * * *
23655 TGCATGCTTTAGTGTCGCAAGAAAAGCTTTTCTTTTCA-CCGTTTTTCATAGAATCAACGTT--T
64 TG-ATGCTTTGGTTTCGCAAGAAAAGC-TTTCTTTCCACCCATTTTT-GTA-AATCAAAGTTCAT
* * * ** *
23717 GTCTCTTAAATAAGACAAACTTGAACACTCATACC
125 G-C-CTCAAATAAGACAAACATGGATTCT-ATACT
* * ** * * * * *
23752 AATAC-CCATTCTTTTCAGGACTAGGCACCATAAACTTAGTCT-TCTCATTTGGATGCACGATAC
1 AAT-CTCCATTCTTTTCATGACTAGGCACTATAAACACATTCTCT-TCATTAGGATACATGATAT
* * * * * * * *
23815 TAATGCTTTGGTTTCGCAAGAAAGGCTTT-TTCCCCACCAATTTCTATAAAGTCTAAGTTCGTGC
64 TGATGCTTTGGTTTCGCAAGAAAAGCTTTCTT-TCCACCCATTTTTGTAAA-TCAAAGTTCATGC
* * * * *
23879 CTTAAATGAGACAAACTTGTATTCTAGTAAT
127 CTCAAATAAGACAAACATGGATTCTA-TACT
* * * * * * *
23910 GATCTTCATTCATTTT-GTGATTAGGCACTATAAGCACATTCACCTCATTAGGATA-AGTGATAT
1 AATCTCCATTC-TTTTCATGACTAGGCACTATAAACACATTCTCTTCATTAGGATACA-TGATAT
* ** * * * * * * * * *
23973 TGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC-CCTATTTTCGTCAAAATCAAACTTC-TT
64 TGATGCTTTGGTTTCGCAAGAAAAGC-TTTCTTTCCACCCATTTTTGT--AAATCAAAGTTCATG
* * * * *
24036 CTATTAAATAAGATAAGCATCGATTCTCATAAC-
126 C-CTCAAATAAGACAAACATGGATTCT-AT-ACT
* * * * * * * * *
24069 AATCTCCATTATTTTCAAGATTGGGAACCTA-AAACACATTCCCTTCATTAGGATACAAGACATC
1 AATCTCCATTCTTTTCATGACTAGGCA-CTATAAACACATTCTCTTCATTAGGATACATGATATT
* ** * *
24133 AATGCTTAAG-TGCAG-AAGAAAAGCTTT-TGTCTCCACCGC-TTTTGGTAGAATCAAAGTT--T
65 GATGCTTTGGTTTC-GCAAGAAAAGCTTTCT-T-TCCACC-CATTTTTGTA-AATCAAAGTTCAT
* * * ** *
24192 GTCTCTTAAATAAAATAAACATTAATAATC-ATGC-
125 G-C-CTCAAATAAGACAAACATGGAT--TCTATACT
* * * * * * * * *
24226 AATTCCCCTTTCTTTTCAGGATTAGGCTCCAT-AA-ACATTGTCTTGTCATAAGGATACACGATA
1 AA-TCTCCATTCTTTTCATGACTAGGCACTATAAACACATTCTC-T-TCATTAGGATACATGATA
* * * * *
24289 TTGATGCTTTGGTTTTGCATGAAAAGCTTTC-TTCCTACCAATTTTCT-TAAAGTCTATGTTCAT
63 TTGATGCTTTGGTTTCGCAAGAAAAGCTTTCTTTCC-ACCCATTTT-TGTAAA-TCAAAGTTCAT
* * *
24352 GCCTCAAATGAGCCAAACATTGATTCTATTACT
125 GCCTCAAATAAGACAAACATGGATTCTA-TACT
* * ** * * * * * * * * * *
24385 GATCTTCATTCTTTTTTTGATTAGGCACTATACACGCATCCTCCTCTTTTGGATAAAAGATATTA
1 AATCTCCATTCTTTTCATGACTAGGCACTATAAACACATTCTCTTCATTAGGATACATGATATTG
* ** * * * * * * * *
24450 ATGATTTTCTTTTGCATGGATATCTTTACTATGC-CCTATTTTCCT-TAAAATCAAAGTTCAT-C
66 ATGCTTTGGTTTCGCAAGAAAAGCTTT-CTTTCCACCCATTTT--TGT-AAATCAAAGTTCATGC
* * * * *
24512 CTGAAAAAAGACTAGCATCGATTCTCATAAC-
127 CTCAAATAAGACAAACATGGATTCT-AT-ACT
* * * * * * * *
24543 AGTCTCCATTCTTTTCAAGA-TGTGGAACCA-AAACACATT-TCATTCTTTAGGATACATGACAC
1 AATCTCCATTCTTTTCATGACT-AGGCACTATAAACACATTCTC-TTCATTAGGATACATGATAT
* * ** *
24605 TGATGCTTTGGTGTCGGAAGAAAAGCTTT-TTTTTACACCGTTTTTGATAGAATCAAAGTT--TG
64 TGATGCTTTGGTTTCGCAAGAAAAGCTTTCTTTCCAC-CCATTTTTG-TA-AATCAAAGTTCATG
* ** *
24667 TCTCTTAAATAAGACAAACATTAATGCTCATACT
126 -C-CTCAAATAAGACAAACATGGATTCT-ATACT
** * *
24701 AATCTGTATTCTTTT-A-GTA-TCAGGCACCAT--A-A-A-------C-TTA-G-TACGTGATAT
1 AATCTCCATTCTTTTCATG-ACT-AGGCACTATAAACACATTCTCTTCATTAGGATACATGATAT
* * * * * * **
24749 TGATGTTTTAGTTTCGCAAGAAAGGCATT-TTTCCAACCAATTTTTGTAAAGTCTAAGTTTGTGC
64 TGATGCTTTGGTTTCGCAAGAAAAGCTTTCTTTCC-ACCCATTTTTGTAAA-TCAAAGTTCATGC
* *
24813 CTCAAATAAGACAAATATGGATTCTAGTAAT
127 CTCAAATAAGACAAACATGGATTCTA-TACT
* * * * * * * *
24844 GATCTTCATTCATTTT-GTGATTAGGCACTATAAAGA-AGTTATTTTCATTAGGATAAATGATAT
1 AATCTCCATTC-TTTTCATGACTAGGCACTATAAACACA-TTCTCTTCATTAGGATACATGATAT
24907 TGATG
64 TGATG
24912 ATTTTCTTTT
Statistics
Matches: 4083, Mismatches: 1204, Indels: 889
0.66 0.19 0.14
Matches are distributed among these distances:
142 3 0.00
143 40 0.01
144 54 0.01
145 19 0.00
146 8 0.00
147 9 0.00
148 34 0.01
149 111 0.03
150 26 0.01
151 12 0.00
152 11 0.00
153 12 0.00
154 108 0.03
155 101 0.02
156 174 0.04
157 509 0.12
158 1308 0.32
159 929 0.23
160 268 0.07
161 250 0.06
162 91 0.02
163 5 0.00
164 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (156 bp):
AATCTCCATTCTTTTCATGACTAGGCACTATAAACACATTCTCTTCATTAGGATACATGATATTG
ATGCTTTGGTTTCGCAAGAAAAGCTTTCTTTCCACCCATTTTTGTAAATCAAAGTTCATGCCTCA
AATAAGACAAACATGGATTCTATACT
Found at i:21538 original size:781 final size:772
Alignment explanation
Indices: 20470--22023 Score: 2016
Period size: 781 Copynumber: 2.0 Consensus size: 772
20460 AGATTGGGAA
** *
20470 CTAGAAACACATTCCCTTCATTAGGATACACAACATTGATGCTTTAAGTCGCAAGAAAAGCTTTT
1 CTAGAAACACATTCCCTTCATTAGGATACACAACATACATGCTTTAAGTCACAAGAAAAGCTTTT
* * *
20535 CTTTCCACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAGTCAAAATGATCCCCA
66 ATTTCCACCATTTTTGATAGAATCAAAGTTTACCTCTTAAATAAGACAAGTCAAAATAATCCCCA
* * * * *
20600 TTCTTTTCGTGATTAGGCAGCATAAACGTAGTCTTTTGATAAGGATACATGATATTGATGCTTTG
131 TTCTTTTCGGGATTAGGCACCATAAACGTAGTCTTATCATAAGGATACACGATATTGATGCTTTG
*
20665 GTTTCGCAAGAAAGGCTTTCTTCCCACCCATTTTTGTAAACTCTAAGTTCATGCCTCAAATGAGC
196 GTTTCGCAAGAAAGGCTTTCTTCCCACCCATTTTTGTAAACTCTAAGTTCATGCCTCAAATGAGA
* * *
20730 CAAACATGGATTCTAGTATTGATCTTCATTCATTTTCTGACTAGGCACTATAAACACATTCTCTT
261 CAAACATGGATTCTAGTACTAATCTTCATTCATTTTCTGACTAGGCACTATAAACACATTCTCCT
*
20795 CATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCT
326 CATTAGGATAAATGATATTGATGATTTTCGTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCT
* * * * * * *
20860 TAAAATCAAAGTTCAT-TCCTTAGA-AAGACAAGCATTGATTCTCATAACAATCTCCATTCTTTT
391 TAAAATCAAAGCTCATCT-CTCAAATAAGACAAACATCGATTCTCACAACAATCTCCATTATTTT
* * * * *
20923 CAAGATTGGGAATCAAAAAGACATCCCCTTCGTTAGGATACACG-TCATAGATGCTTTAGTGTCG
455 CAAGATTGGGAACCAAAAACACATCCCCTTCATTAGGATACACGATCATACATGCTTTAGTGTCA
*
20987 CAAGAAAATATTTTCTTTCCACCG-TTTTGATAGAATCAAAG-TTTGCCTCTTAAATAAGACAAA
520 CAAGAAAAGATTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTTGCCTCTTAAATAAGACAAA
* * * * *
21050 CATGAGTAGTCATACTAATCCCCATTCTTTTCAAGACTAGGCACCATAAACATT-GTCTTCTCAT
585 CATGAATACTCAAACCAATCCCCACTCTTTTCAAGACTAGGCACCATAAAC-TTAGTCTTCTCAT
* * * *
21114 AAAGATACA-GATATTGATGCTTTGGTTTTGCATGAAAGGCTTTCTT-CCCACCAATTTTTGTAA
649 AAAGATACATGATACTAATGCTTTGGTTTTGCAAGAAAGGCTTT-TTCCCCACCAATTTTTATAA
* *
21177 AGTCTAAGTTTGTGCCTCAAAAGAGCCAAAAATGGATTCTAGTAATGAT-CTTCATTCATT
713 AGTCTAAGTTCGTGCCTCAAAAGAGACAAAAATGGATTCTAGTAATGATCCTT-ATTCATT
* **
21237 CTAGTAAACACATTCCCTTCATTAGGATACATGACACATACATGCTTTGGTGTCACAAGAAAAGC
1 CTAG-AAACACATTCCCTTCATTAGGATACA-CA-ACATACATGCTTT-AAGTCACAAGAAAAGC
* * * * *
21302 TTTTATTTCCACCTTTTTTGATAGAATCAAAGTTTATCTTTTAAATAAGACAAACTTGAATACTC
62 TTTTATTTCCACCATTTTTGATAGAATCAAAGTTTACCTCTTAAATAAGAC-AA-GTCAA-A---
* **
21367 ATACCAATCCCCATTCTTTTCGGGATTAGGCACCATAAACTTAGTCCTTATCATTGGGATACACG
121 AT---AATCCCCATTCTTTTCGGGATTAGGCACCATAAACGTAGT-CTTATCATAAGGATACACG
*
21432 ATATTGATGCTTTGGTTTCGCAAGAGAA-GCTTT-TT-CCACTCCAATTTTTGTAAAGTCTAAGT
182 ATATTGATGCTTTGGTTTCGCAAGA-AAGGCTTTCTTCCCAC-CC-ATTTTTGTAAACTCTAAGT
* * * * * *
21494 TCATGCCTTAAATTAGATAAACATGGTTTCTAGTACTAATCTTCATTCATTTTGTGATTAGGCAC
244 TCATGCCTCAAATGAGACAAACATGGATTCTAGTACTAATCTTCATTCATTTTCTGACTAGGCAC
* *
21559 TATAAGCACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCGTTTGTATGAAAATCTTTT
309 TATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCGTTTGCATGAAAATCTTTT
* *
21624 CTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCTCTCAAATAAGATAAACATCGATTCTCGCAA
374 CTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCTCTCAAATAAGACAAACATCGATTCTCACAA
* * * * * * *
21689 TAGTCTCCATTATTTTCAGGATTGGGAACCTAAAACATATTCCCTTCATTAGGATACATGACTCA
439 CAATCTCCATTATTTTCAAGATTGGGAACCAAAAACACATCCCCTTCATTAGGATACACGA-TCA
* * * * * **
21754 TACATGCTTTGGTGTCATAAGGAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTTTT
503 TACATGCTTTAGTGTCACAAGAAAAGATTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTTGC
* ** * *
21819 CTGTTAAATAAGACAAAGTTGAATACTCAAACCAATCCCCACTCTTTTCGAGATTAGGCACCATA
568 CTCTTAAATAAGACAAACATGAATACTCAAACCAATCCCCACTCTTTTCAAGACTAGGCACCATA
* *** *
21884 AACTTAGTGTTCTCATTGGGATACATGATGCTAATGCTTTGGTTTTGCAAGAAAGGCTTTTTCCC
633 AACTTAGTCTTCTCATAAAGATACATGATACTAATGCTTTGGTTTTGCAAGAAAGGCTTTTTCCC
* * * *
21949 CACCAATTTTTATAAAGTCTAAGTTCGTGTCTCAGAAGAGACAAACATGTATTCTAGTAATGATC
698 CACCAATTTTTATAAAGTCTAAGTTCGTGCCTCAAAAGAGACAAAAATGGATTCTAGTAATGATC
22014 CTTATTCATT
763 CTTATTCATT
22024 TTGTGATTAG
Statistics
Matches: 670, Mismatches: 90, Indels: 34
0.84 0.11 0.04
Matches are distributed among these distances:
767 4 0.01
768 26 0.04
769 1 0.00
770 11 0.02
771 59 0.09
772 2 0.00
773 3 0.00
774 1 0.00
777 2 0.00
779 4 0.01
780 40 0.06
781 215 0.32
782 70 0.10
784 36 0.05
785 19 0.03
786 78 0.12
787 96 0.14
788 3 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (772 bp):
CTAGAAACACATTCCCTTCATTAGGATACACAACATACATGCTTTAAGTCACAAGAAAAGCTTTT
ATTTCCACCATTTTTGATAGAATCAAAGTTTACCTCTTAAATAAGACAAGTCAAAATAATCCCCA
TTCTTTTCGGGATTAGGCACCATAAACGTAGTCTTATCATAAGGATACACGATATTGATGCTTTG
GTTTCGCAAGAAAGGCTTTCTTCCCACCCATTTTTGTAAACTCTAAGTTCATGCCTCAAATGAGA
CAAACATGGATTCTAGTACTAATCTTCATTCATTTTCTGACTAGGCACTATAAACACATTCTCCT
CATTAGGATAAATGATATTGATGATTTTCGTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCT
TAAAATCAAAGCTCATCTCTCAAATAAGACAAACATCGATTCTCACAACAATCTCCATTATTTTC
AAGATTGGGAACCAAAAACACATCCCCTTCATTAGGATACACGATCATACATGCTTTAGTGTCAC
AAGAAAAGATTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTTGCCTCTTAAATAAGACAAAC
ATGAATACTCAAACCAATCCCCACTCTTTTCAAGACTAGGCACCATAAACTTAGTCTTCTCATAA
AGATACATGATACTAATGCTTTGGTTTTGCAAGAAAGGCTTTTTCCCCACCAATTTTTATAAAGT
CTAAGTTCGTGCCTCAAAAGAGACAAAAATGGATTCTAGTAATGATCCTTATTCATT
Found at i:23930 original size:951 final size:950
Alignment explanation
Indices: 21242--26818 Score: 6218
Period size: 951 Copynumber: 5.9 Consensus size: 950
21232 TCATTCTAGT
* * *
21242 AAACACATTCCCTTCATTAGGATACATGACACATACATGCTTTGGTGTCACAAGAAAAGCTTTTA
1 AAACACATTCCCTTCATTAGGATACATG--ACATTCATGCTTTGGTGTCGCAAGAAAAGCTTTTC
* *
21307 TTTCCACCTTTTTTGATAGAATCAAAGTTTATCTTTTAAATAAGACAAACTTGAATACTCATACC
64 TTTCCA-CTTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACTTGAATACTCATACC
* * *
21372 AATCCCCATTCTTTTCGGGATTAGGCACCATAAACTTAGTCCTTATCATTGGGATACACGATATT
128 AATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGT-CTTCTCATTAGGATACACGATATT
21437 GATGCTTTGGTTTCGCAAGAGAA-GCTTTTTCCACT-CCAATTTTTGTAAAGTCTAAGTTCATGC
192 GATGCTTTGGTTTCGCAAGA-AAGGCTTTTTCC-CTACC-ATTTTTGTAAAGTCTAAGTTCATGC
* * * * *
21500 CTTAAATTAGATAAACATGGTTTCTAGT-ACTAATCTTCATTCATTTTGTGATTAGGCACTATAA
254 CTCAAATGAGACAAACATGGATTCTAGTAAC-GATCTTCATTCATTTTGTGATTAGGCACTATAA
* * * *
21564 GCACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCGTTTGTATGAAAATCTTTTCTTTG
318 GCACATTCTCTTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTG
* * * * * **
21629 CCCTATTTTCCTTAAAATCAAAGCTCATCTCTCAAATAAGATAAACATCGATTCTCGCAATAGTC
383 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAATAGTC
* *
21694 TCCATTATTTTCAGGATTGGGAACCTAAAACATATTCCCTTCATTAGGATACATGACTCATACAT
448 TCCATTATTTTCAGGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGAC-AATACAT
** * * * *
21759 GCTTTGGTGTCATAAGGAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTTTTCTGTT
512 GCTTTGGTGTCGCAAGAAAAGCTTTT-TTTCCACCGTTTTTGATAGAATCAAAG-TTTGTCTCTT
* * * *
21824 AAATAAGACAAAGTTGAATACTCAAACCAATCCCCACTCTTTTC-GAGATTAGGCACCATAAACT
575 AAATAAGACAAACTTGAATACTCATACCAATACCCATTCTTTTCAG-GATTAGGCACCATAAACT
* * * * *
21888 TAGTGTTCTCATTGGGATACATGATGCTAATGCTTTGGTTTTGCAAGAAAGGCTTTTTCCCCACC
639 TAGTCTTCTCATTAGGATACACGATACTAATGCTTTGGTTTCGCAAGAAAGGCTTTTTCCCCACC
* * *
21953 AATTTTTATAAAGTCTAAGTTCGTGTCTCAGAA-GAGACAAACATGTATTCTAGTAATGATCCTT
704 AATTTTTATAAAGTCTAAGTTCGTGCCTCA-AATGAGACAAACTTGGATTCTAGTAATGAT-CTT
* * * * *
22017 -ATTCATTTTGTGATTAGGCTCTATAAGCAGATTCTCCTC---GGGATTAGTGATATTGAAGATT
767 CATTCATTTTGTGATTAGGCACTATAAGCACATTCTCCTCATTAGGATAAGTGATATTGATGATT
** * * * * * *
22078 TTCTTTTGCGCGAAAATCTTTTCTTTGCCCTATTTTCCCTAAAATCAAAGTTTATCTCTTTAATA
832 TTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAACTTCATCCCTTAAATA
* ** * * * **
22143 AGACAAGCATCAATTCTTGT-ACCATCCCCTTTCCTTTCAAGATTAGGAACC-A
897 AGACAAGCATCGATTCTCATAACAATCTCCATTATTTTCAAGATTAGGAACCTA
* * ** * * **
22195 AAACCACATTCCATTCATTAGGATGCACAACTTTGATGCTTTGGCATCGCAAGAAAAGCTTTTCT
1 AAA-CACATTCCCTTCATTAGGATACATGACATTCATGCTTTGGTGTCGCAAGAAAAGCTTTTCT
* * ** * * * * * *
22260 TTCCACCATTTTTGATACAAAGAAAGTTTGCCTCTTAAATAAGATAAGCATGAATAATCATACTA
65 TTCCA-CTTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACTTGAATACTCATACCA
** * * *
22325 ATCCCCATTCTTTTTGGGATTAGGTACCATAAACATT-GTCTTCTCTTTAGGATACATGATATTG
129 ATCCCCATTCTTTTCAGGATTAGGCACCATAAAC-TTAGTCTTCTCATTAGGATACACGATATTG
* * *
22389 ATGCTTTGGTTTCTCTAGAAAGGCTTTTTCCCTACCAATTTTTGTAAAGTCTAAGCTT-GTGCCT
193 ATGCTTTGGTTTCGCAAGAAAGGCTTTTTCCCTACC-ATTTTTGTAAAGTCTAAG-TTCATGCCT
* * * * *
22453 CATACGAGAGAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAGGCACTATAAGCA
256 CAAATGAGACAAACATGGATTCTAGTAACGATCTTCATTCATTTTGTGATTAGGCACTATAAGCA
* * **
22518 CATTCT-TCTCATTAGGATAAATGATATTGATGACTTTCTTTTCCCCGGAAATCTTTTCTTTGCC
321 CATTCTCT-TCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
* * * * * *
22582 CTATTTTCCTTCAAATCAAAGCTCATCCCATAAATATGGCAAGCATCGATTCTCGTAATAGTCTC
385 CTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAATAGTCTC
* * * *
22647 CATAATTTTCAGGATTGGGAACCTAAAACACAATCCCTTCACTAGGATACATGCCACATACATGC
450 CATTATTTTCAGGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACA-ATACATGC
* *
22712 TTTGGTGTCGCAAGAAAAGCTTTTTTTTCACCGTTTTTGATAGAATCAAAGTTTGTCTCTGAAAT
514 TTTGGTGTCGCAAGAAAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* * * * * * *
22777 AAGACAAGCTTGAGTACTCATATCAGTACCCATTCTTTTC-GAGATTTGGCACCATAAACTCAAT
579 AAGACAAACTTGAATACTCATACCAATACCCATTCTTTTCAG-GATTAGGCACCATAAACTTAGT
* * * **
22841 CTTCTCATTGGGATACACGATACTAATGCTTTGGTTTCACAAGAAAGGGTTTTTCCTTACCAATT
643 CTTCTCATTAGGATACACGATACTAATGCTTTGGTTTCGCAAGAAAGGCTTTTTCCCCACCAATT
** * * * *
22906 TTTATAAAGTCTAAGTTCACGCCTCAAATGAGATAAACATAGATTCTAGTAATGATCTTTATTCA
708 TTTATAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACTTGGATTCTAGTAATGATCTTCATTCA
*
22971 TTTTGTGATTAGGCACTATAAGCACATTCTCCTCAATAGGATAAGTGATATTGATGATTTT-TTT
773 TTTTGTGATTAGGCACTATAAGCACATTCTCCTCATTAGGATAAGTGATATTGATGATTTTCTTT
* * *
23035 TGCTTGGAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAA
838 TGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAACTTCATCCCTTAAATAAGACAA
* * * * *
23100 ACATCGATTCTCATAACAGTCTTCATTATTTTCAAGATTGGGATCCTA
903 GCATCGATTCTCATAACAATCTCCATTATTTTCAAGATTAGGAACCTA
* * *
23148 AAACACATTTCCTTTATTAGGATACATGACGCATACATGCTTTGGTGTCGCAAGAAAAGCTTTTC
1 AAACACATTCCCTTCATTAGGATACATGA--CATTCATGCTTTGGTGTCGCAAGAAAAGCTTTTC
23213 TTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACTTGAATACTCATACC
64 TTTCCACT-TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACTTGAATACTCATACC
* * * * *
23278 AATACCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTCATTTGGATACATGATACTA
128 AATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTG
* * * * *
23343 ATGCTTTCGTTTCGCAAGAAAGGC-TTTTCCCTA-C-TTTTTATAAAGTCTACGTTCGTTCCTCA
193 ATGCTTTGGTTTCGCAAGAAAGGCTTTTTCCCTACCATTTTTGTAAAGTCTAAGTTCATGCCTCA
* * *
23405 AGTGAGACAAACATGGATTCTAGTAACGATCTTCATTCACTTTGTGATTAGGCACCATAAGCACA
258 AATGAGACAAACATGGATTCTAGTAACGATCTTCATTCATTTTGTGATTAGGCACTATAAGCACA
* * * *
23470 TTCTCTTCATTAGGATAAGTGATATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTCGCTCTA
323 TTCTCTTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTA
* * *
23535 TTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAACATCGATTTTCATATTAGTCTCCAT
388 TTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAATAGTCTCCAT
* * * *
23600 TATTTTCAGGATTGGGATCCAAAAACACATTCCCTTCACTAGGATACATGACATATGCATGCTTT
453 TATTTTCAGGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACA-ATACATGCTTT
* * * *
23665 AGTGTCGCAAGAAAAGCTTTTCTTTTCACCGTTTTTCATAGAATCAACGTTTGTCTCTTAAATAA
517 GGTGTCGCAAGAAAAGCTTTT-TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
* *
23730 GACAAACTTGAACACTCATACCAATACCCATTCTTTTCAGGACTAGGCACCATAAACTTAGTCTT
581 GACAAACTTGAATACTCATACCAATACCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTT
* * *
23795 CTCATTTGGATGCACGATACTAATGCTTTGGTTTCGCAAGAAAGGCTTTTTCCCCACCAATTTCT
646 CTCATTAGGATACACGATACTAATGCTTTGGTTTCGCAAGAAAGGCTTTTTCCCCACCAATTTTT
* *
23860 ATAAAGTCTAAGTTCGTGCCTTAAATGAGACAAACTTGTATTCTAGTAATGATCTTCATTCATTT
711 ATAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACTTGGATTCTAGTAATGATCTTCATTCATTT
*
23925 TGTGATTAGGCACTATAAGCACATTCACCTCATTAGGATAAGTGATATTGATGATTTTCTTTTGC
776 TGTGATTAGGCACTATAAGCACATTCTCCTCATTAGGATAAGTGATATTGATGATTTTCTTTTGC
* * * ** *
23990 ATGGAAATCTTTTCTTTGCCCTATTTTCGTCAAAATCAAACTTCTTCTATTAAATAAGATAAGCA
841 ATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAACTTCATCCCTTAAATAAGACAAGCA
*
24055 TCGATTCTCATAACAATCTCCATTATTTTCAAGATTGGGAACCTA
906 TCGATTCTCATAACAATCTCCATTATTTTCAAGATTAGGAACCTA
* ** *
24100 AAACACATTCCCTTCATTAGGATACAAGACA-TCAATGCTTAAGTG-CAG-AAGAAAAGCTTTTG
1 AAACACATTCCCTTCATTAGGATACATGACATTC-ATGCTTTGGTGTC-GCAAGAAAAGCTTTTC
* ** * * * * *
24162 TCTCCACCGCTTTTGGTAGAATCAAAGTTTGTCTCTTAAATAAAATAAACATT-AATAATCAT-G
64 TTTCCA-CTTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC-TTGAATACTCATAC
* * * *
24225 CAATTCCCCTTTCTTTTCAGGATTAGGCTCCATAAACATT-GTCTTGTCATAAGGATACACGATA
127 CAA-TCCCCATTCTTTTCAGGATTAGGCACCATAAAC-TTAGTCTTCTCATTAGGATACACGATA
* * * *
24289 TTGATGCTTTGGTTTTGCATGAAAAGCTTTCTT-CCTACCAATTTTCT-TAAAGTCTATGTTCAT
190 TTGATGCTTTGGTTTCGCAAGAAAGGCTTT-TTCCCTACC-ATTTT-TGTAAAGTCTAAGTTCAT
* * * * *
24352 GCCTCAAATGAGCCAAACATTGATTCTA-TTACTGATCTTCATTCTTTTTTTGATTAGGCACTAT
252 GCCTCAAATGAGACAAACATGGATTCTAGTAAC-GATCTTCATTCATTTTGTGATTAGGCACTAT
* * * * * * * * *
24416 ACA-CGCATCCTCCTCTTTTGGATAAAAGATATTAATGATTTTCTTTTGCATGGATATCTTTACT
316 A-AGCACATTCTCTTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCT
* * * * *
24480 ATGCCCTATTTTCCTTAAAATCAAAGTTCAT-CCTGAAAAAAGACTAGCATCGATTCTCATAACA
380 TTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAATA
* * * * * *
24544 GTCTCCATTCTTTTCAAGA-TGTGGAACC-AAAACACATTTCATTCTTTAGGATACATGACACT-
445 GTCTCCATTATTTTCAGGATTG-GGAACCTAAAACACATTCCCTTCATTAGGATACATGACAATA
* * *
24606 GATGCTTTGGTGTCGGAAGAAAAGCTTTTTTTTACACCGTTTTTGATAGAATCAAAGTTTGTCTC
509 CATGCTTTGGTGTCGCAAGAAAAGC-TTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTC
* * ** * *
24671 TTAAATAAGACAAACATT-AATGCTCATACTAAT-CTGTATTCTTTT-AGTATCAGGCACCATAA
573 TTAAATAAGACAAAC-TTGAATACTCATACCAATAC-CCATTCTTTTCAGGATTAGGCACCATAA
* * * * *
24733 ACTTAG---------TACG-T----GATATTGATGTTTTAGTTTCGCAAGAAAGGCATTTTT-CC
636 ACTTAGTCTTCTCATTAGGATACACGATACTAATGCTTTGGTTTCGCAAGAAAGGC-TTTTTCCC
* * * *
24783 AACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATAAGACAAA-TATGGATTCTAGTAATGAT
700 CACCAATTTTTATAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACT-TGGATTCTAGTAATGAT
* ** *
24847 CTTCATTCATTTTGTGATTAGGCACTATAAAG-A-AGTTATTTTCATTAGGATAAATGATATTGA
764 CTTCATTCATTTTGTGATTAGGCACTAT-AAGCACA-TTCTCCTCATTAGGATAAGTGATATTGA
* *
24910 TGATTTTCTTTTGTATGCAAATC--TT-TTT----T-TTTT-C-----AT----C--CA----TT
827 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAACTTCATCCCTT
* * * * * *
24951 AAA-AA-AAAAGCATCGATTCCCGTAACAGTCTCCATTCTTTTCAAGATTAGGAA-CGA
892 AAATAAGACAAGCATCGATTCTCATAACAATCTCCATTATTTTCAAGATTAGGAACCTA
* * * ** * * *
25007 AAACCACATTCCTTTCAATGGGATACATGACATTGGTGCTTTGGTGTCACAACAAAGGCTTTTCT
1 AAA-CACATTCCCTTCATTAGGATACATGACATTCATGCTTTGGTGTCGCAAGAAAAGCTTTTCT
* * * * * * * * *
25072 TTCTATCATTTTTGATATAATCAAAG-TTATCTCTTAAATAAAACAAACATGAATAGTCATGCTA
65 TTCCA-CTTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACTTGAATACTCATACCA
* * * * * * * *
25136 ATCCCTATTTTTTTCAGGATTAGGCACCAAAAACGTAGTCTTCTCAATAGGATACGCAATATTCA
129 ATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGA
* * * *
25201 TGTTTTTGTTTCGCAAGAAAGGCATTTT-CCTACCAATTTTTGTAAAGTTTAAGTTCATGCCTCA
194 TGCTTTGGTTTCGCAAGAAAGGCTTTTTCCCTACC-ATTTTTGTAAAGTCTAAGTTCATGCCTCA
** * * * *
25265 AATGAGACAAATGTGGACTCTAGTAATGATCTTTAGTCATTTTGTGATTAGGCACTATAAGCACA
258 AATGAGACAAACATGGATTCTAGTAACGATCTTCATTCATTTTGTGATTAGGCACTATAAGCACA
* * *
25330 TTCTCCTT-ATTAGGATAAATGATATTGATTATTTTCTTTTCCGTGGAAATCTTTTCTTTGCCCT
323 TTCT-CTTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCT
* ** * *
25394 ATTTTCCTTAAAATCAAAGTTCAT-CCTAAAAATAAGACAAGCATTAATTCTCATAACAATCTCC
387 ATTTTCCTTAAAATCAAAGTTCATCCCT-TAAATAAGACAAGCATCGATTCTCATAATAGTCTCC
* * * * * * * * *
25458 ATTCTTTTCAAGATTGGGAACC-AAAAGCACAATCCCTTCAGTAGAATAAATGATAAT-GATACT
451 ATTATTTTCAGGATTGGGAACCTAAAA-CACATTCCCTTCATTAGGATACATGACAATACATGCT
* * **
25521 TTGGGGTCACAAGAAAAGCTTTTTTTCCACCGTTTTTGACGGAATCAAAGTTTGTCTCTTAAA-A
515 TTGGTGTCGCAAGAAAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * * * * * * *
25585 ACGACAAACATAAATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCAACATAAACATAGTC
580 A-GACAAACTTGAATACTCATACCAATACCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTC
* * * * ** * *
25650 CTCTCAATAGGATACGCGATATTGTTGTTTTGGTTTCACAAGAAAGGCATTTTT-CCCACCAATT
644 TTCTCATTAGGATACACGATACTAATGCTTTGGTTTCGCAAGAAAGGC-TTTTTCCCCACCAATT
* * * *
25714 TTTGTAAAGTTTAAGTCCGTGCCTCAAATGAGACAAA-TATGGATTCTAGTAATGGTCTTCATTC
708 TTTATAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACT-TGGATTCTAGTAATGATCTTCATTC
25778 ATTTTGTGATTAGGCACTATAAGCACATTCTCCTCCA-TAGGATAAGTGATATTGATGATTTTCT
772 ATTTTGTGATTAGGCACTATAAGCACATTCTCCT-CATTAGGATAAGTGATATTGATGATTTTCT
* * * *
25842 TTTACATGGAAATCTTTTCTTTGCCTTGTTTTCCTTAAAATCAAACTTCATCCCTTAAATAAGAT
836 TTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAACTTCATCCCTTAAATAAGAC
* * * ** *
25907 ACGCATCGATTCTCATAACAATCTCTAATATTTTCCGGATTTGGAACCTA
901 AAGCATCGATTCTCATAACAATCTCCATTATTTTCAAGATTAGGAACCTA
* * * * *
25957 AAACACATTCCCTCCATTAGCATACATGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCGT
1 AAACACATTCCCTTCATTAGGATACATGACATTCATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT
* * *
26022 TCCACCATTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACTTCAACACTCATACTA
66 TCCA-C-TTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACTTGAATACTCATACCA
* * * *
26087 ATCCCCTTTCTTTTCGGGAATAGGCACCATAAACTTAGTCTTCTCATTAGGACT-CACAATATTG
129 ATCCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTCATTAGGA-TACACGATATTG
*
26151 ATGCTTTGGTTTCGCAAGAAAGGCTTTTTCCAC-ACCAATTTTTGTAAAGTCTAAGTTCATGTCT
193 ATGCTTTGGTTTCGCAAGAAAGGCTTTTTCC-CTACC-ATTTTTGTAAAGTCTAAGTTCATGCCT
* * * * * *
26215 TAAATAAGACAAACGTGGATTCTAGTGATGATCTTCATTCATTTTGTGGTTAGGCACTATAAGCA
256 CAAATGAGACAAACATGGATTCTAGTAACGATCTTCATTCATTTTGTGATTAGGCACTATAAGCA
* * ** ** *
26280 CATTCTC-CCTATAAGGATAAATGATATTGATGATTTTCTTTTGCATAAAAAAATTATCTTTGCC
321 CATTCTCTTC-ATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
* * * * **
26344 CTATTTTCCTTAAAATCAAAGTTTATCCCTTAAATAAGCCAAGCATTGATTATTGTAATAGTCTC
385 CTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAATAGTCTC
*
26409 CATTATTTTCAGCATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACACATACATGC
450 CATTATTTTCAGGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACA-ATACATGC
* * *
26474 TTTGGTGTCGTAAGAAAAGCTTTTCTTTCCACTGTTTTTGAGAGAATCAAAGTTTGTCTCTTAAA
514 TTTGGTGTCGCAAGAAAAGCTTTT-TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAA
* * * * * * * *
26539 TAAGACAAA-TATGATTACTTATACTAATTCCCATTCTTTGCATGG-TTAAGAACCATAAACATA
578 TAAGACAAACT-TGAATACTCATACCAATACCCATTCTTTTCA-GGATTAGGCACCATAAACTTA
* * * * * *
26602 GTCTTCTCATTAGGATACATGATATTTATGCTTTGATTTCGCAAGAAAGGCTTTCTACCCCCCCA
641 GTCTTCTCATTAGGATACACGATACTAATGCTTTGGTTTCGCAAGAAAGGCTTT-TTCCCCACCA
* * * * * * *
26667 AATTTTGTTAAGTCTATGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTAT
705 ATTTTTATAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACTTGGATTCTAGTAATGATCTTCAT
*
26732 TCATTTTGTGATTAGGCACTATAAGCACGTTCTCCTCATTAGGATAAGTGATATTGATGATTTT-
770 TCATTTTGTGATTAGGCACTATAAGCACATTCTCCTCATTAGGATAAGTGATATTGATGATTTTC
* *
26796 ATTTGCATGAAAATCTTTTCTTT
835 TTTTGCATGGAAATCTTTTCTTT
26819 AAAAAGAAAA
Statistics
Matches: 3909, Mismatches: 588, Indels: 252
0.82 0.12 0.05
Matches are distributed among these distances:
906 2 0.00
907 168 0.04
908 298 0.08
909 101 0.03
910 5 0.00
914 1 0.00
916 1 0.00
918 3 0.00
919 1 0.00
920 2 0.00
922 3 0.00
923 164 0.04
924 3 0.00
925 2 0.00
926 7 0.00
927 1 0.00
930 1 0.00
931 7 0.00
932 3 0.00
933 2 0.00
934 157 0.04
935 8 0.00
937 2 0.00
938 1 0.00
939 2 0.00
941 1 0.00
943 2 0.00
947 5 0.00
948 31 0.01
949 524 0.13
950 349 0.09
951 796 0.20
952 598 0.15
953 179 0.05
954 207 0.05
955 147 0.04
956 125 0.03
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (950 bp):
AAACACATTCCCTTCATTAGGATACATGACATTCATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT
TCCACTTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACTTGAATACTCATACCAAT
CCCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTCATTAGGATACACGATATTGATG
CTTTGGTTTCGCAAGAAAGGCTTTTTCCCTACCATTTTTGTAAAGTCTAAGTTCATGCCTCAAAT
GAGACAAACATGGATTCTAGTAACGATCTTCATTCATTTTGTGATTAGGCACTATAAGCACATTC
TCTTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTT
TCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAATAGTCTCCATTAT
TTTCAGGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACAATACATGCTTTGGTG
TCGCAAGAAAAGCTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
ACTTGAATACTCATACCAATACCCATTCTTTTCAGGATTAGGCACCATAAACTTAGTCTTCTCAT
TAGGATACACGATACTAATGCTTTGGTTTCGCAAGAAAGGCTTTTTCCCCACCAATTTTTATAAA
GTCTAAGTTCGTGCCTCAAATGAGACAAACTTGGATTCTAGTAATGATCTTCATTCATTTTGTGA
TTAGGCACTATAAGCACATTCTCCTCATTAGGATAAGTGATATTGATGATTTTCTTTTGCATGGA
AATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAACTTCATCCCTTAAATAAGACAAGCATCGAT
TCTCATAACAATCTCCATTATTTTCAAGATTAGGAACCTA
Found at i:28600 original size:42 final size:42
Alignment explanation
Indices: 28521--28603 Score: 112
Period size: 42 Copynumber: 2.0 Consensus size: 42
28511 TAAGAGGAAT
* * * * *
28521 GATAGGAAAAGAGATAAGAGAGGTAGTGGAGATAGAAGGGAC
1 GATAAGAAAAGAGATAAGAGAGATAATAGAGAGAGAAGGGAC
*
28563 GATAAGAAGAGAGATAAGAGAGATAATAGAGAGAGAAGGGA
1 GATAAGAAAAGAGATAAGAGAGATAATAGAGAGAGAAGGGA
28604 TGACAAAAGG
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.49, C:0.01, G:0.39, T:0.11
Consensus pattern (42 bp):
GATAAGAAAAGAGATAAGAGAGATAATAGAGAGAGAAGGGAC
Found at i:33055 original size:42 final size:42
Alignment explanation
Indices: 33006--33089 Score: 141
Period size: 42 Copynumber: 2.0 Consensus size: 42
32996 TTTCACTATT
*
33006 CATCACTGTTCATGTATCGATACATTGTGAATACTATCGATA
1 CATCACTGTTCATGTATCGATACATTATGAATACTATCGATA
* *
33048 CATCACTGTTCATGTATTGATACATTATGAATAGTATCGATA
1 CATCACTGTTCATGTATCGATACATTATGAATACTATCGATA
33090 TATTGAGTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (42 bp):
CATCACTGTTCATGTATCGATACATTATGAATACTATCGATA
Found at i:33072 original size:22 final size:22
Alignment explanation
Indices: 33006--33072 Score: 68
Period size: 22 Copynumber: 3.1 Consensus size: 22
32996 TTTCACTATT
33006 CATCACTGTTCATGTATCGATA
1 CATCACTGTTCATGTATCGATA
** *
33028 CAT---TGTGAATACTATCGATA
1 CATCACTGTTCAT-GTATCGATA
*
33048 CATCACTGTTCATGTATTGATA
1 CATCACTGTTCATGTATCGATA
33070 CAT
1 CAT
33073 TATGAATAGT
Statistics
Matches: 34, Mismatches: 7, Indels: 8
0.69 0.14 0.16
Matches are distributed among these distances:
19 5 0.15
20 11 0.32
22 13 0.38
23 5 0.15
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.37
Consensus pattern (22 bp):
CATCACTGTTCATGTATCGATA
Found at i:33089 original size:20 final size:20
Alignment explanation
Indices: 33019--33089 Score: 63
Period size: 20 Copynumber: 3.5 Consensus size: 20
33009 CACTGTTCAT
*
33019 GTATCGATACATTGTGAATA
1 GTATCGATACATTATGAATA
* * *
33039 CTATCGATACATCACTG-TTCA
1 GTATCGATACATTA-TGAAT-A
*
33060 TGTATTGATACATTATGAATA
1 -GTATCGATACATTATGAATA
33081 GTATCGATA
1 GTATCGATA
33090 TATTGAGTTT
Statistics
Matches: 38, Mismatches: 9, Indels: 8
0.69 0.16 0.15
Matches are distributed among these distances:
20 20 0.53
21 6 0.16
22 12 0.32
ACGTcount: A:0.34, C:0.14, G:0.15, T:0.37
Consensus pattern (20 bp):
GTATCGATACATTATGAATA
Found at i:33601 original size:35 final size:36
Alignment explanation
Indices: 33531--33602 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 36
33521 CGAAGTGATT
* **
33531 GAGAGGTTTTATCTTAGCTTTTGAAAAAGATAGGGA
1 GAGAGGTTCTATCTTAGCTCGTGAAAAAGATAGGGA
33567 GAGAGGTTCTATCTTAGCTCGTG-AAAAGATAGGGA
1 GAGAGGTTCTATCTTAGCTCGTGAAAAAGATAGGGA
33602 G
1 G
33603 GTTTCTATCT
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
35 13 0.39
36 20 0.61
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (36 bp):
GAGAGGTTCTATCTTAGCTCGTGAAAAAGATAGGGA
Found at i:33614 original size:32 final size:33
Alignment explanation
Indices: 33531--33628 Score: 114
Period size: 32 Copynumber: 3.0 Consensus size: 33
33521 CGAAGTGATT
*
33531 GAGAGGTTT-TATCTTAGCTTTTGAAAAAGATAGG
1 GAGAGGTTTCTATCTTAGCTCTTG-AAAAGATA-G
* *
33565 GAGAGAGGTTCTATCTTAGCTCGTGAAAAGATAG
1 GAGAG-GTTTCTATCTTAGCTCTTGAAAAGATAG
33599 G-GAGGTTTCTATCTTAGC-CTTG-AAAGATAG
1 GAGAGGTTTCTATCTTAGCTCTTGAAAAGATAG
33629 TGTTTTAAGG
Statistics
Matches: 57, Mismatches: 5, Indels: 8
0.81 0.07 0.11
Matches are distributed among these distances:
30 8 0.14
31 3 0.05
32 13 0.23
33 3 0.05
34 7 0.12
35 11 0.19
36 12 0.21
ACGTcount: A:0.31, C:0.10, G:0.28, T:0.32
Consensus pattern (33 bp):
GAGAGGTTTCTATCTTAGCTCTTGAAAAGATAG
Found at i:36290 original size:159 final size:158
Alignment explanation
Indices: 36067--37212 Score: 514
Period size: 158 Copynumber: 7.3 Consensus size: 158
36057 CACATTCCCT
* * * * * * * *
36067 TCATTATGATACACGACATCGATGCTTTGGTGTCGCGAGAAAAGCTTTTCTTTTCACCGTTTTTG
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
*
36132 ATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTT
66 ATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTT
*
36197 CGGGATAAGGCACCATAAACGTAGTCTCC
131 CGGGATTAGGCACCATAAAC-TAGTCTCC
* * * *
36226 TCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTCTTCCCACCAATTTTT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACC-ATTTTT
** * * * * * * **
36290 G-TA-AAGTTTAAGTTTGTGCCTC--AAATGAGCCAAATATGGATTCT-AGTAATAATCTTCATT
65 GATAGAA-TCAAAG-TT-TGCCTCTTAAATAAGACAAACATGAATACTCA-TACTAATCCCCATT
* * * * * *
36350 AATTTT-GTGATTTGGTACTAT-AA--A-TCTCT
126 -CTTTTCGGGATTAGGCACCATAAACTAGTCTCC
* * * * ** * * *
36379 TTATTAGGATAAATGATATTGATGATTT-TTTTTACATAG-AAATCTTTTTTTTTTGCC-CTATT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCA-AGAAAAGC--TTTTCTTT-CCACCATT
*** * * * * * * * *
36441 TTCCTTAAAATCAAAGTTTACCACGTAAATAAGACAAGCATCG-ATTCTCATAAC-AGTCCCTAT
62 TTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACAT-GAATACTCAT-ACTAATCCCCAT
** * * * * * *
36504 TCTTTTCAAGATTGGGAACTAAAAACACATTC-CC
125 TCTTTTCGGGATTAGGCACCATAAAC-TAGTCTCC
* * * *
36538 TTCATTAGGATACATGACATTGATGCTTTAGTGTCGTAAGAAAAGCTTTTCTTTCCACCATTTTT
1 -TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
* * *
36603 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACTTTAATACTCATACTAATCCCCATT-TTT
65 GATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTT
* *
36667 TACGGGATTAGGCACCATAAACTTAGTTTTC
130 T-CGGGATTAGGCACCATAAAC-TAGTCTCC
* **
36698 TCATT-GGAATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTT-TCCCCACCAATTTT
1 TCATTAGG-ATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACC-ATTTT
* ** * * * * * ***
36761 TG-TA-AAGTCCAAGTTCATGCCTC--AAATCGGACAACCATGGATTCT-AGTAATGATCTTTAT
64 TGATAGAA-TCAAAGTT--TGCCTCTTAAATAAGACAAACATGAATACTCA-TACTAATCCCCAT
** * *
36821 TCTTTT-GGTGATTAGGCACTGTTAGCACT-TTCTCC
125 TCTTTTCGG-GATTAGGCAC-CATA-AACTAGTCTCC
* * * * ** * * * * *
36856 ACCTTACGATA-AGTGATATTGATGATTTTCTTTTGCACGAAAATCTTTTTTTTGCC-CTATTTT
1 TCATTAGGATACA-TGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTT-CCACCATTTT
*** * * * * * * **
36919 CCTTAAAATCAATGTTTATCC-CTTAAA-AAGATAAGCATCG-ATTCTCATAAC-AATTTCCATT
64 TGATAGAATCAAAGTTT-GCCTCTTAAATAAGACAAACAT-GAATACTCAT-ACTAATCCCCATT
*** * * * *
36980 -TTTTCAAAATTGGGAACCAT-AAGTGCATTC-CC
126 CTTTTCGGGATTAGGCACCATAAACT--AGTCTCC
* * * * * *
37012 TTCATTAGTATACATGACATTGATGCCTTGATGTTAG-AAGAAAAGCTTTTCTTTCCACCGTTTT
1 -TCATTAGGATACATGATATTGATGCTTTGGT-TTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
* * * * *
37076 TGATGGAATCAAAGTTTGTCTCTTAAATAAGATAAACATGAATAGTCAAACTAATCCCCATTCTT
64 TGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTT
* * *
37141 TTCAGGATTAGGCACCATAAACATTGTCTTC
129 TTCGGGATTAGGCACCATAAAC-TAGTCTCC
* * * *
37172 -CGTTAGGATACACGATACTGATGTTTTGGTTTCGCAAGAAA
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAA
37213 GGCATTTTTC
Statistics
Matches: 707, Mismatches: 209, Indels: 143
0.67 0.20 0.14
Matches are distributed among these distances:
152 8 0.01
153 33 0.05
154 14 0.02
155 45 0.06
156 15 0.02
157 89 0.13
158 231 0.33
159 215 0.30
160 49 0.07
161 8 0.01
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (158 bp):
TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
ATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTT
CGGGATTAGGCACCATAAACTAGTCTCC
Found at i:38829 original size:159 final size:159
Alignment explanation
Indices: 38085--40798 Score: 995
Period size: 159 Copynumber: 17.1 Consensus size: 159
38075 CTATTTTTCG
* * * * * * *
38085 TAAATAAGACAAGCATCG-ATTCTCATAATAGTCCCTATTCTTTTCCA-GATTGGGAACTAGAAA
1 TAAATAAGACAAACAT-GAATTCTCATACTAATCCCTATTCTTTT-CAGGATTAGGCACCATAAA
* * * * * * *
38148 CACATTC-CCTTCATTAGAATACATGACATTGATGCTTTAGTGTCACAAGAAAAGCTTTTCTTTC
64 CATATTCTCC-TCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTC
* **
38212 CACCATTTTTGATAGAATCAAAGTTTGCCTCT
128 CACCATTTTTGATAAAATCAAAGTTTATCTCT
* ** * * * * *
38244 TAAATAAAACAAACATGAATAGTCATACTAATCCCCATTCTTTTTAGGATAAGGCACCATTAACG
1 TAAATAAGACAAACATGAATTCTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACA
* * * ** * * * * *
38309 TAGTCACCTTAAAAAGATACACGATATTGATGCTTTTGTTTTGCAAGAAAGGC-TTTCTTCCCAT
66 TATTCTCCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCA-
** * ** ** ***
38373 AAATTTTTG-TAAAGTTTACCTCCGTGC-CT
130 CCATTTTTGATAAAATCAAAGTTTAT-CTCT
* * * * ** * ** * *
38402 CAAATGAG-CTAAACATGGATTAT-AGTTTTGATCTTTATTCATTTT-GGGATTAGGCACTATAA
1 TAAATAAGAC-AAACATGAATTCTCA-TACTAATCCCTATTC-TTTTCAGGATTAGGCACCATAA
* * * ** ** ** * *
38464 ACATATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTACCTGAAAATCTTTTATTTG
63 ACATATTCTCCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTT-
* ** * * * *
38529 CC-CTATTTTCCAGAAAATCAATGTTCATCCCT
127 CCACCATTTTTGATAAAATCAAAGTTTATCTCT
** * * * * * * * *
38561 TGGA-AAGACAAGCATCG-ATTCTCGTA-AAAGTTTCC-ATTCGTTTCAAGATTGGGAACCA-AA
1 TAAATAAGACAAACAT-GAATTCTCATACTAA--TCCCTATTCTTTTCAGGATTAGGCACCATAA
* * ** *
38621 A-ATGGATTCCCCTCATTAGGATACATGAGCTTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT
63 ACAT--ATTCTCCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTT
*
38685 TCCACCATTTTTGATAGAATCAAAGTTTATCTCT
126 TCCACCATTTTTGATAAAATCAAAGTTTATCTCT
* **
38719 TAAATAAGACAAACATGAATTGTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAATG
1 TAAATAAGACAAACATGAATTCTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACA
* * * * * *
38784 TAGTCTTCTCATAAGGATACACGATATTGATGCGTTGGTTTCGCAAGAAAGGC-TTTCTTCCCAC
66 TATTCTCCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCAC
** * *
38848 CAATTTTTG-TAATGTCTAAGTTCATGC-CT
131 C-ATTTTTGATAAAATCAAAGTTTAT-CTCT
* * * * ** *
38877 CAAA-AGAGCCAAACATGGATTCT-AGTATTAATCTTTATTCATTTT--GTGATTAGGCACTATA
1 TAAATA-AGACAAACATGAATTCTCA-TACTAATCCCTATTC-TTTTCAG-GATTAGGCACCATA
* ** * * * * * * * ** * * * * *
38938 AGCCCATTCCCCTCATTAAGAGAAATGATATTGAAGATTTTTTTTTGCATGGAAATCATTTCTTT
62 AACATATTCTCCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTT
* *** * *
39003 GCCA-TATTTTCCTTAAAATCAAAGTTCATCCCT
127 -CCACCATTTTTGATAAAATCAAAGTTTATCTCT
* * * * ** ** * *
39036 TAAATAAGACAAGCATTG-ATTCTCGTAATAGTCCCCCTTCATTTT-AATATT-GGGAGCCAAAA
1 TAAATAAGACAAACA-TGAATTCTCATACTAATCCCTATTC-TTTTCAGGATTAGGCA-CCATAA
* * * * ** * *
39098 ACACATTC-CTTTCACTAAGATACACGACCTTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTT
63 ACATATTCTC-CTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTT
* * * *
39162 CCACCGTTTTTGATAGAATCAAAGTTTGTGTCT
127 CCACCATTTTTGATAAAATCAAAGTTTATCTCT
* * ** * * * *
39195 TAAATAAGACAAACATGAATACTCTTACTGGTCCCCATTATTTTCAAGAATAGGCACCATAAACA
1 TAAATAAGACAAACATGAATTCTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACA
* * * * ** * * * * * *
39260 TAGTCTTCACATTGGGATACACGATGCTGATGTTTTGGTTTTGCAAGGAAGGCATTT-TTCCCAT
66 TATTCTCCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCA-
** *
39324 AAATTTTTG-TAAAGTCAAAGTTTATGC-CT
130 CCATTTTTGATAAAATCAAAGTTTAT-CTCT
* * ** * * * * * * *
39353 CAAATGAGACAAATGTGGATTCT-AGTAATGAT-CTTCATTCACTTT--GTGATTTGGCACGATA
1 TAAATAAGACAAACATGAATTCTCA-TACTAATCCCT-ATTC-TTTTCAG-GATTAGGCACCATA
* * * * * ** ** * * *
39414 AGCACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTTCATGGAAATCTTTTCTTT
62 AACATATTCTCCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTT
* ** * * *
39479 GCC-CTATTTTCCATAAAATAAAAGTTCATCCCT
127 -CCACCATTTTTGATAAAATCAAAGTTTATCTCT
* * * * * * * *
39512 TAAATAAGACGAGCATCG-TTTC-CTATAATAGTCCCTATTCTTTTCATGATTGGGAACCA-AAA
1 TAAATAAGACAAACAT-GAATTCTC-ATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAA
* * * ** * * * *
39574 TCACATTC-CCATCAATAAGAGGCATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTT
64 -CATATTCTCC-TCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTT
* * * **
39638 CCACCGTTTTTGATAGAATCAAAGCTTGCCTCT
127 CCACCATTTTTGATAAAATCAAAGTTTATCTCT
* * *
39671 TAAATAAGACAAACATGAATACTCATACTAATCCCTATTCTTTTCAAGATTAGGCACCATTAACA
1 TAAATAAGACAAACATGAATTCTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACA
* * * * **
39736 TAGTCTTCTCATTAGGATACACGAT-TTGATGCTTTGGTTTAGCAAGAAAGGCTTTT-TCCCCAC
66 TATTCTCCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCAC
* *
39799 CAATTTTTG-TAAAGTCTAAGTTCGTA-C-CT
131 C-ATTTTTGATAAAATCAAAGTT--TATCTCT
* * * * * * **
39828 TAAA-AGAGCCAAACATGGATTCT-AGTATTTAT-CTTCATTCAATTT--GTGATTAGGCATTAT
1 TAAATA-AGACAAACATGAATTCTCA-TACTAATCCCT-ATTC-TTTTCAG-GATTAGGCACCAT
* * * * * * *
39888 AAGA-ACT-TTCTCCTCATTAGGATA-AGTGATATTGATGATTT-TTTTTGTAAGGAAATCTTTT
61 AA-ACA-TATTCTCCTCATTAGGATACA-CGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTT
* *** * * *
39949 CTTTGCC-CTATTTTCCTTAAAATTAAAGTTTATCCCA
123 CTTT-CCACCATTTTTGATAAAATCAAAGTTTATCTCT
* * * * * *
39986 TAAATAAGACAAGCATCAATTCTCATAAC-AGTCTCC-ATTCTTTTCATGATTGGGAACCA-AAA
1 TAAATAAGACAAACATGAATTCTCAT-ACTAATC-CCTATTCTTTTCAGGATTAGGCACCATAAA
* * * * * *
40048 -ATGCACTC-CCTTCATTAGGATACACGACATTCATGCTTTGGTGTT-GTAAGAAAAACCTTTCT
64 CAT--ATTCTCC-TCATTAGGATACACGATATTGATGCTTTGGT-TTCGCAAGAAAAGCTTTTCT
* * * *
40110 TTCCATCATTTTTAACAAAATCAAAGTTTGTCTCT
125 TTCCACCATTTTTGATAAAATCAAAGTTTATCTCT
* * * * ** * *
40145 TAAACAAGGCAATCATGCATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCGCCATAAACA
1 TAAATAAGACAAACATGAATTCTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACA
* * * * * * * * *
40210 TAGTCTTCTCATTAGGATACGCGATACTGATGTTTTGGTTTCGTAAGAAAGGCATTT-TTCCCAC
66 TATTCTCCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCAC
* * *
40274 CAATTTTTG-GAAAGTCTAAGTTTATGC-CT
131 C-ATTTTTGATAAAATCAAAGTTTAT-CTCT
* * * * * * * *
40303 CAAATGAGACAAACATGGATTCT-AGTAATGAT--CT-TCCTTAATT-TGTGATTAGGCACTATA
1 TAAATAAGACAAACATGAATTCTCA-TACTAATCCCTATTCTT--TTCAG-GATTAGGCACCATA
* * * * * * ** * *
40363 AGCACATTCTCCTCATTAGAATAAATGATATTGATGATTTTCTTTCGCATGAAAATCTTTTCTTT
62 AACATATTCTCCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTT
** *** * *
40428 -GGCC-TATTTCCCTAAAATCAAAGTTCATCCCT
127 CCACCAT-TTTTGATAAAATCAAAGTTTATCTCT
* * * * * * ** *
40460 TAAATAAGAC-AGCATCG-ATTCTCGTAATAGTCTCC-ATTATTTTCAAGATCGGGAACC-TAAA
1 TAAATAAGACAAACAT-GAATTCTCATACTAATC-CCTATTCTTTTCAGGATTAGGCACCAT-AA
* *
40521 ACATATTC-CCTTCATTAGGATAC-CTGACATTGATGCTTTGATGTT-GCAAGAAAAGCTTTTCT
63 ACATATTCTCC-TCATTAGGATACAC-GATATTGATGCTTTGGT-TTCGCAAGAAAAGCTTTTCT
* * * **
40583 TTTCACCATTTTTGATAGAATAAAAGTTTGCCTCT
125 TTCCACCATTTTTGATAAAATCAAAGTTTATCTCT
* * * *
40618 TAAATAAGACAAACTTGAATACTTATACTAATCCCCATTCTTTTC-GAGATTAGGCACCATAAAC
1 TAAATAAGACAAACATGAATTCTCATACTAATCCCTATTCTTTTCAG-GATTAGGCACCATAAAC
* * * * * * * **
40682 TTAGTCTTCTAATTGGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTT-TCCCCA
65 ATATTCTCCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCA
*
40746 CCAATTTTTG-TAAAGTCTAAA-TTTATGC-CT
130 CC-ATTTTTGATAAAATC-AAAGTTTAT-CTCT
** * *
40776 CGAATGAGACAAACATGGATTCT
1 TAAATAAGACAAACATGAATTCT
40799 GGTAATAATC
Statistics
Matches: 1818, Mismatches: 594, Indels: 287
0.67 0.22 0.11
Matches are distributed among these distances:
155 6 0.00
156 34 0.02
157 258 0.14
158 670 0.37
159 810 0.45
160 37 0.02
161 3 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.35
Consensus pattern (159 bp):
TAAATAAGACAAACATGAATTCTCATACTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACA
TATTCTCCTCATTAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCAC
CATTTTTGATAAAATCAAAGTTTATCTCT
Found at i:39013 original size:475 final size:475
Alignment explanation
Indices: 38085--40990 Score: 3570
Period size: 475 Copynumber: 6.1 Consensus size: 475
38075 CTATTTTTCG
* * * * * *
38085 TAAATAAGACAAGCATCGATTCTCATAATAGTCCCTATTCTTTTCCAGATTGGGAACTAGAAACA
1 TAAATAAGACAAGCATCGATTCTCGTAATAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAATA
* *
38150 CATTCCCTTCATTAGAATACATGACATTGATGCTTTAGTGTCACAAGAAAAGCTTTTCTTTCCAC
66 CATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCAC
* *
38215 CATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAAACAAACATGAATAGTCATACTAATCCCC
131 CATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCC
* * * * ** * ** *
38280 ATTCTTTTTAGGATAAGGCACCATTAACGTAGTCACCTTAAAAAGATACACGATATTGATGCTTT
196 ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTT
* ** * ** * *
38345 TGTTTTGCAAGAAAGGCTTTCTTCCCATAAATTTTTGTAAAGTTTACCTCCGTGCCTCAAATGAG
261 GGTTTTGCAAGAAAGGCTTT-TTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAG
* ** * * * *
38410 -CTAAACATGGATTATAGTTTTGATCTTTATTCATTTTGGGATTAGGCACTATAAACATATTCTC
325 AC-AAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAGCACATTCTC
* * * *
38474 CTCATTAGGATAAATGATATTGATGATTTTCTTTTACCTGAAAATCTTTTATTTGCCCTATTTTC
389 CTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTC
** *
38539 CAGAAAATCAATGTTCATCCCT
454 CTTAAAATCAAAGTTCATCCCT
** * ** * *
38561 TGGA-AAGACAAGCATCGATTCTCGTAAAAGTTTCCATTCGTTTCAAGATTGGGAACCAAAAATG
1 TAAATAAGACAAGCATCGATTCTCGTAATAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAATA
* * *
38625 GATTCCCCTCATTAGGATACATGAGC-TTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA
66 CATTCCCTTCATTAGGATACATGA-CATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCA
** **
38689 CCATTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATTGTCATACTAATCCC
130 CCATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATACTCATACTAATCCC
* ** * *
38754 TATTCTTTTCAGGATTAGGCACCATAAATGTAGTCTTCTCATAAGGATACACGATATTGATGCGT
195 CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTT
* * *
38819 TGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAATGTCTAAGTTCATGCCTCAAAAGA
260 TGGTTTTGCAAGAAAGGCTTT-TTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGA
* * * * * *
38884 GCCAAACATGGATTCTAGTATTAATCTTTATTCATTTTGTGATTAGGCACTATAAGCCCATTCCC
324 GACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAGCACATTCTC
* * * * * *
38949 CTCATTAAGAGAAATGATATTGAAGATTTTTTTTTGCATGGAAATCATTTCTTTGCCATATTTTC
389 CTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTC
39014 CTTAAAATCAAAGTTCATCCCT
454 CTTAAAATCAAAGTTCATCCCT
* * * * *
39036 TAAATAAGACAAGCATTGATTCTCGTAATAGTCCCCCTTCATTTT-AATATTGGGAGCCAAAAAC
1 TAAATAAGACAAGCATCGATTCTCGTAATAGTCCCCATTC-TTTTCAAGATTGGGAACCAAAAAT
* * * * *
39100 ACATTCCTTTCACTAAGATACACGACCTTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCA
65 ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCA
* ** * **
39165 CCGTTTTTGATAGAATCAAAGTTTGTGTCTTAAATAAGACAAACATGAATACTCTTACTGGTCCC
130 CCATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATACTCATACTAATCCC
* * * * * ** *
39230 CATTATTTTCAAGAATAGGCACCATAAACATAGTCTTCACATTGGGATACACGATGCTGATGTTT
195 CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTT
* ** * *
39295 TGGTTTTGCAAGGAAGGCATTTTTCCCATAAATTTTTGTAAAGTCAAAGTTTATGCCTCAAATGA
260 TGGTTTTGCAAGAAAGGC-TTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGA
** * * *
39360 GACAAATGTGGATTCTAGTAATGATCTTCATTCACTTTGTGATTTGGCACGATAAGCACATTCTC
324 GACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAGCACATTCTC
*
39425 CTCATTAGGATAAATGATATTGATGATTTTCTTTTTCATGGAAATCTTTTCTTTGCCCTATTTTC
389 CTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTC
* *
39490 CATAAAATAAAAGTTCATCCCT
454 CTTAAAATCAAAGTTCATCCCT
* * * * *
39512 TAAATAAGACGAGCATCGTTTC-CTATAATAGTCCCTATTCTTTTCATGATTGGGAACC-AAAAT
1 TAAATAAGACAAGCATCGATTCTC-GTAATAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAAT
* * * **
39575 CACATTCCCATCAATAAGAGGCATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCC
65 -ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCC
* *
39640 ACCGTTTTTGATAGAATCAAAGCTTGCCTCTTAAATAAGACAAACATGAATACTCATACTAATCC
129 ACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATACTCATACTAATCC
* * *
39705 CTATTCTTTTCAAGATTAGGCACCATTAACATAGTCTTCTCATTAGGATACACGAT-TTGATGCT
194 CCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCT
* * * * *
39769 TTGGTTTAGCAAGAAAGGCTTTTTCCCCACCAATTTTTGTAAAGTCTAAGTTCGTACCTTAAAAG
259 TTGGTTTTGCAAGAAAGGCTTTTT-CCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATG
* * * * * * *
39834 AGCCAAACATGGATTCTAGTATTTATCTTCATTCAATTTGTGATTAGGCATTATAAGAACTTTCT
323 AGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAGCACATTCT
* * *
39899 CCTCATTAGGATAAGTGATATTGATGATTTT-TTTTGTAAGGAAATCTTTTCTTTGCCCTATTTT
388 CCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTT
* * *
39963 CCTTAAAATTAAAGTTTATCCCA
453 CCTTAAAATCAAAGTTCATCCCT
* * * * * *
39986 TAAATAAGACAAGCATCAATTCTCATAACAGTCTCCATTCTTTTCATGATTGGGAACCAAAAATG
1 TAAATAAGACAAGCATCGATTCTCGTAATAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAATA
* * * *** * * *
40051 CACTCCCTTCATTAGGATACACGACATTCATGCTTTGGTGTTGTAAGAAAAACCTTTCTTTCCAT
66 CATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCAC
* * * * * * * * *
40116 CATTTTTAACAAAATCAAAGTTTGTCTCTTAAACAAGGCAATCATGCATAGTCATACTAATCCCC
131 CATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCC
* * * *
40181 ATTCTTTTCAGGATTAGGCGCCATAAACATAGTCTTCTCATTAGGATACGCGATACTGATGTTTT
196 ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTT
* * * *
40246 GGTTTCGTAAGAAAGGCATTTTTCCCACCAATTTTTGGAAAGTCTAAGTTTATGCCTCAAATGAG
261 GGTTTTGCAAGAAAGGC-TTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAG
* *
40311 ACAAACATGGATTCTAGTAATGATCTTCCTT-AATTTGTGATTAGGCACTATAAGCACATTCTCC
325 ACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAGCACATTCTCC
* * * *
40375 TCATTAGAATAAATGATATTGATGATTTTCTTTCGCATGAAAATCTTTTCTTTGGCCTA-TTTCC
390 TCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCC
*
40439 CTAAAATCAAAGTTCATCCCT
455 TTAAAATCAAAGTTCATCCCT
* * * * *
40460 TAAATAAGAC-AGCATCGATTCTCGTAATAGTCTCCATTATTTTCAAGATCGGGAACCTAAAACA
1 TAAATAAGACAAGCATCGATTCTCGTAATAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAATA
* * * ** *
40524 TATTCCCTTCATTAGGATACCTGACATTGATGCTTTGATGTTGCAAGAAAAGCTTTTCTTTTCAC
66 CATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCAC
* * *
40589 CATTTTTGATAGAATAAAAGTTTGCCTCTTAAATAAGACAAACTTGAATACTTATACTAATCCCC
131 CATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCC
* * * *
40654 ATTCTTTTC-GAGATTAGGCACCATAAACTTAGTCTTCTAATTGGGATACATGATATTGATGCTT
196 ATTCTTTTCAG-GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTT
* * * *
40718 TGGTTTTGCAAGAAAAGCTTTTTCCCCACCAATTTTTGTAAAGTCTAAATTTATGCCTCGAATGA
260 TGGTTTTGCAAGAAAGGCTTTTT-CCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGA
* * * * * *
40783 GACAAACATGGATTCTGGTAATAATCTTTATT-GTTTTGTGATTAGGCACTATTAGCAGATTCTC
324 GACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAGCACATTCTC
* * * * * * * *
40847 CACCTTAGGATAAGTGATGTTGATGGTTTTCTTTTGTATGGAAATCTTTCCTTTGCCTTATTTTC
389 CTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTC
* * * *
40912 CTTAAAACCTAAGTTTATCCAT
454 CTTAAAATCAAAGTTCATCCCT
* *
40934 TAAATAAGACAAGCATTGATTCTCGTAATAGTCCCCATTCTTTTTAAGATTGGGAAC
1 TAAATAAGACAAGCATCGATTCTCGTAATAGTCCCCATTCTTTTCAAGATTGGGAAC
40991 TGTAGACACC
Statistics
Matches: 2077, Mismatches: 334, Indels: 39
0.85 0.14 0.02
Matches are distributed among these distances:
472 6 0.00
473 363 0.17
474 378 0.18
475 712 0.34
476 612 0.29
477 6 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (475 bp):
TAAATAAGACAAGCATCGATTCTCGTAATAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAATA
CATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCAC
CATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCC
ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTT
GGTTTTGCAAGAAAGGCTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGA
CAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAGCACATTCTCCT
CATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCT
TAAAATCAAAGTTCATCCCT
Found at i:41389 original size:82 final size:82
Alignment explanation
Indices: 41250--41428 Score: 322
Period size: 82 Copynumber: 2.2 Consensus size: 82
41240 ATAAACAGTA
* *
41250 AATGTATCGATACATAAGTGTTGTATCGATACAATGTATTGCTACAAAGCTATTGCCAAGGAAAT
1 AATGTATCGATACATAAGTGTTGTATCGATACAATGTATCGCTACAAAGCTACTGCCAAGGAAAT
*
41315 GAATCAATACATCATTC
66 GAATCAACACATCATTC
41332 AATGTATCGATACATAAGTGTTGTATCGATACAATGTATCGCTACAAAGCTACTGCCAAGGAAAT
1 AATGTATCGATACATAAGTGTTGTATCGATACAATGTATCGCTACAAAGCTACTGCCAAGGAAAT
*
41397 GAATCGACACATCATTC
66 GAATCAACACATCATTC
41414 AATGTATCGATACAT
1 AATGTATCGATACAT
41429 TGTATTGATA
Statistics
Matches: 93, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
82 93 1.00
ACGTcount: A:0.37, C:0.17, G:0.16, T:0.29
Consensus pattern (82 bp):
AATGTATCGATACATAAGTGTTGTATCGATACAATGTATCGCTACAAAGCTACTGCCAAGGAAAT
GAATCAACACATCATTC
Found at i:42338 original size:476 final size:476
Alignment explanation
Indices: 41444--43839 Score: 3404
Period size: 476 Copynumber: 5.0 Consensus size: 476
41434 TGATACATTG
* * *
41444 ATGAGAAGAAC-ATGTTTATGGTGCCCAATCCTGAAAAGAATGGGGATTAGTTTGACTATTCATG
1 ATGAGAAG-ACTATATTGATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTATTCATG
* * * * *
41508 TTTCTCCTATTTAAGACACAAACTTTGATTCCATCAAAAATGGTGGAATGAAAAGCTTTTCTTGC
65 TTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGC
* * * *
41573 GACACCAAAGCATCAATGTCATGCCCCCTCTTGATGGGAATGTGATATTGGTTCCCAAGCTTGAA
130 GACACCAAAGCATCAATGTCATGCCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTTGAA
* * * * * *
41638 AAGAATAGGGACTCTTACGAGAAAGGAGGCTCGTCTTATTTAAGAGATGAACTTTTATTTTATGG
195 AAGAATGGGGACTATTATGAGAAACGATGCTCGTCTTATTTAAGGGATGAACTTTTATTTTATGG
*
41703 AAAATAGGG-AGAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTGATGAG
260 AAAATAGGGCA-AAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAG
*
41767 GAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATC
324 GAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATT
* *
41832 GCATTTGAGCCATGAACTCAGACTTTTCAAAAATTGGTGGGAAAAATGCCCTTCTTGCAAAACCA
389 GCATTTGAGGCATGAACTTAGACTTTTCAAAAATTGGTGGGAAAAATGCCCTTCTTGCAAAACCA
41897 AAGCATCAATATCGCGTATCCTA
454 AAGCATCAATATCGCGTATCCTA
* * * *
41920 ACGAGAAGACTATATTGATCGTGCCTAATCCTGAAAAAAATGGAGATTAGTTTGACTATTCATGT
1 ATGAGAAGACTATATTGATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTATTCATGT
* * *
41985 TTGTCTTATTTAAGAGATAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCCTTTCTTGCA
66 TTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCG
*
42050 ACACCAAAGCATCAATGTCATGCCTCTTATTGATGGGAATGTGATTTTGGTTCCCAATCTTGAAA
131 ACACCAAAGCATCAATGTCATGCCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTTGAAA
* * * *
42115 AGAATGGGGACTATTATGGGAAACGACGCTCGTCTTATTTAGGGGATGAACTTTTATTTGATGGA
196 AGAATGGGGACTATTATGAGAAACGATGCTCGTCTTATTTAAGGGATGAACTTTTATTTTATGGA
*
42180 AAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCGAATGAGGA
261 AAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGA
* * * *
42245 GAATGTGCTTCTAGTGCCTAATCACAAAATGAATGAAGATAATTACTAGAATCCAGGTTTGTTGC
326 GAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATTGC
* *
42310 ATTTGAGGCATTAACTTAGACTTTTCAAAAATTGGTGGGAAAAATGCCCTTCTTGGAAAACCAAA
391 ATTTGAGGCATGAACTTAGACTTTTCAAAAATTGGTGGGAAAAATGCCCTTCTTGCAAAACCAAA
42375 GCATCAATATCGCGTATCCTA
456 GCATCAATATCGCGTATCCTA
* *
42396 ATGAGAAGACTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTCTGACTATTCATGT
1 ATGAGAAGACTATATTGATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTATTCATGT
* *
42461 TTGTCTTATTTAAGAGAGAAACTTTGATTCCATCAAAAAAGGTGGAAAGAAAAGCTTTTCTTGCG
66 TTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCG
* * * *
42526 ACACCAAAGCATCAATGTTATGTCTCCAATTAATGGGAATGTGATTTTGGTTCCCAATCTTGAAA
131 ACACCAAAGCATCAATGTCATGCCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTTGAAA
* * * * * * *
42591 AGAATGGGGACTATCATGAGAATC-AGTGCTCATCTTATTTAAGGGATGAACTTTGAATTCATGA
196 AGAATGGGGACTATTATGAGAAACGA-TGCTCGTCTTATTTAAGGGATGAACTTTTATTTTATGG
* * * *
42655 AAAATAACGGCAAAAAAAAGATTTCCATGCAAAA-AATATCATCAATATCATTTATCCTAATGAG
260 AAAAT-AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAG
* * * * * *
42719 GAGAATATGCTTATAGTGCATAATCATAAAATGAATAAAGATCATTCCTAGAATCCATGTTTGTC
324 GAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTAT-
* * * * * * ** * *
42784 T-CATTTAAGGCACGAAATTTGACTTTTCAAAAATTGGCGGGAAAAACGCATTTCTTGCGAAATC
388 TGCATTTGAGGCATGAACTTAGACTTTTCAAAAATTGGTGGGAAAAATGCCCTTCTTGCAAAACC
* * *
42848 AAAGCTTCAATATCGTGCATCCTA
453 AAAGCATCAATATCGCGTATCCTA
* * * * * * *
42872 ATGAGAAGAAC-ATGTTTATGGTGCCCAATCCTGAAAATAATGGGGAGTAGTTTGCCTACTCATG
1 ATGAGAAG-ACTATATTGATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTATTCATG
* * *
42936 TTTGCCTTATTTAAGTGACAAACTTTGATTCCATCAAAAACGGTGCAAAGAAAAGCTTTTCTTGC
65 TTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGC
* * *
43001 GACCCCAAAGCATCAATGTCTTGTCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTTGAA
130 GACACCAAAGCATCAATGTCATGCCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTTGAA
* * ** * *
43066 AAGATTGGGGACTATTACGAGAATTGATGCTCGTCTTATTTAAGGGATGAACTTTTATTTTACGA
195 AAGAATGGGGACTATTATGAGAAACGATGCTCGTCTTATTTAAGGGATGAACTTTTATTTTATGG
* * * *
43131 AAAATAGGGCAAAGAAAAGATTTCCATGAAAAAGAAAATCATCATTATCGTTTCTCCTACTGAGG
260 AAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGG
* * * *
43196 GGAATGTGCTTATAGTGCCTAATCTCAAAATGAATGAAGATCATT-TTAAGAATCCATGTTTATC
325 AGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACT-AGAATCCATGTTTATT
* * ** * * * **
43260 GCATTTGAAGCATGAACCTAGACTTCACAAAAATTGGAGGGAAAGATGCCTTTCTTGTGAAACCA
389 GCATTTGAGGCATGAACTTAGACTTTTCAAAAATTGGTGGGAAAAATGCCCTTCTTGCAAAACCA
* *
43325 AAGTATCAATATCGCATATCCTA
454 AAGCATCAATATCGCGTATCCTA
* * *
43348 ATGAGAAGACTATATTGGTGGTGCCTAAGCCTGAAAAGAATGGGGATTAGTTTGACTATTAATGT
1 ATGAGAAGACTATATTGATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTATTCATGT
* * * *
43413 TTATCTTATTTAAGAGATACACTTTGATTCCATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCG
66 TTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCG
43478 ACACCAAAGCATCAATGTCATGCC-CCTTATTGATGGGAATGTGATTTTGGTTCCCAATCTTGAA
131 ACACCAAAGCATCAATGTCATGCCTCC-TATTGATGGGAATGTGATTTTGGTTCCCAATCTTGAA
* * * * * *
43542 AAGAAAGGGGACTAATATGAGAAACAATGTTCATCTTATTGAAGGGATGAACTTTTATTTTATGG
195 AAGAATGGGGACTATTATGAGAAACGATGCTCGTCTTATTTAAGGGATGAACTTTTATTTTATGG
* * * *
43607 AAAATAGGGCAAATAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTCTCCTAGTAAGG
260 AAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGG
* * *
43672 AGAATATGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACAAGAATCCATGTCTATTG
325 AGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATTG
* *
43737 CATTTAAGGCATGAACTTAGACTTTTCAAAAATTGGTGGGAAAAATGCCCTTCTTGGAAAACCAA
390 CATTTGAGGCATGAACTTAGACTTTTCAAAAATTGGTGGGAAAAATGCCCTTCTTGCAAAACCAA
*
43802 AGCATCAATATCGGGTATCCTA
455 AGCATCAATATCGCGTATCCTA
43824 ATGAGAAGACTATATT
1 ATGAGAAGACTATATT
43840 TGTGGAAAAG
Statistics
Matches: 1694, Mismatches: 213, Indels: 26
0.88 0.11 0.01
Matches are distributed among these distances:
475 33 0.02
476 1630 0.96
477 31 0.02
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.30
Consensus pattern (476 bp):
ATGAGAAGACTATATTGATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTATTCATGT
TTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCG
ACACCAAAGCATCAATGTCATGCCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTTGAAA
AGAATGGGGACTATTATGAGAAACGATGCTCGTCTTATTTAAGGGATGAACTTTTATTTTATGGA
AAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGA
GAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATTGC
ATTTGAGGCATGAACTTAGACTTTTCAAAAATTGGTGGGAAAAATGCCCTTCTTGCAAAACCAAA
GCATCAATATCGCGTATCCTA
Found at i:44169 original size:385 final size:383
Alignment explanation
Indices: 43461--44225 Score: 1183
Period size: 385 Copynumber: 2.0 Consensus size: 383
43451 ACGGTGAAAA
* *
43461 GAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGCCCCTTATTGATGGGAATGTGATTTT
1 GAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGCCCCTTATTAATGGGAATGTGATTTT
* *
43526 GGTTCCCAATCTTGAAAAGAAAGGGGACTAATATGAGAAACAATGTTCATCTTATTGAAGGGATG
66 GGTTCCCAATCTTGAAAAGAAAGGGGACTAATATCAGAAACAATGCTCATCTTATTGAAGGGATG
* * * * * * * *
43591 AACTTTTATTTTATGGAAAATAGGGCAAATAAAAGATTTTCATGCAAAAGAAAATCATCAATATC
131 AACTTTGAATTTATGGAAAAAAAGGCAAAGAAAAGATTTCCATGCAAAAAAAAATCATCAACATC
*
43656 ATTTCTCCTAGTAAGGAGAATATGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACAA
196 ATTTCTCCTAATAAGGAGAATATGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACAA
* *
43721 GAATCCATGTCTATTGCATTTAAGGCATGAACTTAGACTTTTCAAAAATTGGTGGGAAAAATGCC
261 GAATCCATGTCTATCGCATTTAAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCC
* *
43786 CTTCTTGGAAAACCAAAGCATCAATATCGGGTATCCTAATGAGAAGACTATATTTGTG
326 CTTCTTGCAAAACCAAAGCATCAATATCGCGTATCCTAATGAGAAGACTATATTTGTG
* * *
43844 GAAAAGCTTTTCTTACGACACCAAAGCATCAATGTTATG-TCTTCTATTAATGGGAATGTGATTT
1 GAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGCCCCT-TATTAATGGGAATGTGATTT
* * * * * * *
43908 TGGTTCCCAATCTTGATAAGAATGGGGACTATTA-CATGAATCGATGCTCGTCTTATTTAAGGGA
65 TGGTTCCCAATCTTGAAAAGAAAGGGGACTAATATCA-GAAACAATGCTCATCTTATTGAAGGGA
*
43972 TGAACTTTGAATTTATGGAAAACAAAGGCAAAGAAAAGATTTCCATTCAAAAAAAAAATCATCAA
129 TGAACTTTGAATTTATGGAAAA-AAAGGCAAAGAAAAGATTTCCATGC-AAAAAAAAATCATCAA
* *
44037 CATCATTTCTCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATT
192 CATCATTTCTCCTAATAAGGAGAATATGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATT
* * *
44102 ACTAGAATCCATGTTTATCGCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAA
257 ACAAGAATCCATGTCTATCGCATTTAAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAA
44167 TGCCCTTCTTGCAAAACCAAAGCATCAATATCGCGTATCCTAATGAGAAGACTATATTT
322 TGCCCTTCTTGCAAAACCAAAGCATCAATATCGCGTATCCTAATGAGAAGACTATATTT
44226 ATGGTGGCTA
Statistics
Matches: 345, Mismatches: 33, Indels: 6
0.90 0.09 0.02
Matches are distributed among these distances:
382 3 0.01
383 129 0.37
384 20 0.06
385 193 0.56
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.30
Consensus pattern (383 bp):
GAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGCCCCTTATTAATGGGAATGTGATTTT
GGTTCCCAATCTTGAAAAGAAAGGGGACTAATATCAGAAACAATGCTCATCTTATTGAAGGGATG
AACTTTGAATTTATGGAAAAAAAGGCAAAGAAAAGATTTCCATGCAAAAAAAAATCATCAACATC
ATTTCTCCTAATAAGGAGAATATGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACAA
GAATCCATGTCTATCGCATTTAAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCC
CTTCTTGCAAAACCAAAGCATCAATATCGCGTATCCTAATGAGAAGACTATATTTGTG
Found at i:45689 original size:13 final size:13
Alignment explanation
Indices: 45671--45696 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
45661 TACACCAAGT
45671 ATGTATCGATACA
1 ATGTATCGATACA
45684 ATGTATCGATACA
1 ATGTATCGATACA
45697 CCAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:45694 original size:32 final size:33
Alignment explanation
Indices: 45653--45716 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
45643 TAGCCAAACT
**
45653 TGTATCGATACACCAAGTA-TGTATCGATACAA
1 TGTATCGATACACCAAAAATTGTATCGATACAA
45685 TGTATCGATACACCAAAAATTGTATCGATACA
1 TGTATCGATACACCAAAAATTGTATCGATACA
45717 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 17 0.59
33 12 0.41
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACCAAAAATTGTATCGATACAA
Found at i:47359 original size:158 final size:159
Alignment explanation
Indices: 47078--48300 Score: 418
Period size: 158 Copynumber: 7.7 Consensus size: 159
47068 AAAAGAATGT
* * * * * * *
47078 CATCAATATCATTTATCCTACTAAGGAGAATGTGCTTATAGTGCCTAATCAC--AAAATGAA-GG
1 CATCAATATCATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATC-CTGAAAA-GAATGG
* * * * * * *
47140 AAGATCATTACT-AGAATCCATGTTTGTCTCATTTAAG-G-CATTAACATAGACTTTA-CAAAAA
64 -AGATTATTA-TGA-AATTCATGTTTGTCTTATTTAAGAGACA-GAACTTTGATTTTATC-AAAA
47201 TTAGTGGGAAA-AATGCCTTTCTTGCAAAACCAAAA
124 TTAGTGGGAAAGAATGCCTTTCTTGCAAAACCAAAA
* *** *
47236 CATCAATGTTGCGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGG
1 CATCAATATCATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGAG
*
47301 ATTAGTT-TGAATATTCATGTTTGTCTTATTTAAGAGACA-AACTTTGATTTTATCAAAATCAGT
66 ATTA-TTATGAA-ATTCATGTTTGTCTTATTTAAGAGACAGAACTTTGATTTTATCAAAATTAGT
* *
47364 -GGAAAGAATAGCCTTTCTTGCAACACCAAAG
129 GGGAAAGAAT-GCCTTTCTTGCAAAACCAAAA
* * * * * *
47395 CTTCAATGTCATGTATCCTAATGAAGGAA-A-TGTGTTT-TAGGAT-CCCAATCATGAAAACAAT
1 CATCAATATCATGTATCCTAAT-AA-GAAGACTATGTTTAT-GG-TGCCTAATCCTGAAAAGAAT
* * * *
47456 GGAGACTATTACGAGAA-TCGATGCTTGTCTTATTTAAG-GA-ATGAACTTTGATTTTATAAAAA
62 GGAGATTATTATGA-AATTC-ATGTTTGTCTTATTTAAGAGACA-GAACTTTGATTTTATCAAAA
* * * * *
47518 ATAG-GGCAAAGAAAG-ATTTCCATT-CAAAA-GAAAA
124 TTAGTGGGAAAGAATGCCTTT-C-TTGCAAAACCAAAA
* * * * * * * * ** *
47552 TCATTAGTATCATTTATCCTATTGAGGAGAATGTGCCTATAGTGCCTAATCAC--AAAATGAA-G
1 -CATCAATATCATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATC-CTGAAAA-GAATG
* * * * * *
47614 GAAGATCATTACTGAAATCCATGTTTGTCTCATTT--GACG-CATGAACATAGACTTTA-CAAAA
63 G-AGATTATTA-TGAAATTCATGTTTGTCTTATTTAAGA-GACA-GAACTTTGATTTTATC-AAA
* * **
47675 ACTAGTGGGAAA-AATGCCTTTCATGTGAAACCAAAA
123 ATTAGTGGGAAAGAATGCCTTTCTTGCAAAACCAAAA
* * *
47711 CGTCAATATCGA-GTATCCTAATGAGAAGACTATATTTGA-GGTGCCTAATCCTGAAAAGAATGG
1 CATCAATATC-ATGTATCCTAATAAGAAGACTATGTTT-ATGGTGCCTAATCCTGAAAAGAATGG
* * * ** * *
47774 GGATTAGTT-TGACTATTCATGTTTATCTTATTTAAGAGACA-AACTTTGATTCCATCAAAAATG
64 AGATTA-TTATGA-AATTCATGTTTGTCTTATTTAAGAGACAGAACTTTGATTTTATCAAAATTA
* ** * *
47837 GT-GGAAAGGAAAG-CTTCTCTTGTGACACCAAAG
127 GTGGGAAA-GAATGCCTT-TCTTGCAAAACCAAAA
* ** * * * * * * * *
47870 CATCAATGTCATG-CCCCTTAT-TGATGGGAATGTGATTT-TGGTTCCCAATCTTGAAAAGAATA
1 CATCAATATCATGTATCCTAATAAGA--AGACTATG-TTTATGGTGCCTAATCCTGAAAAGAAT-
* * * * * * * *
47932 GG-GACTATTATTAGAAA--CAATGCTCGTCTTATTTAAGGGATA-AACTTTTATATTATGGAAA
62 GGAGATTATTA-T-GAAATTC-ATGTTTGTCTTATTTAAGAGACAGAACTTTGATTTTAT-CAAA
* * * * *
47993 A-TAG-GGCAAAGAAAAG-ATTTCCATGCAAAA-GAAAA
123 ATTAGTGGGAAAG-AATGCCTTT-CTTGCAAAACCAAAA
* * * * * * * * * * **
48028 TCATTAATATTATTTCTCCGAATGAGGAGAATGTGCTTATAATGCCTAATCAC--AAAATGAATG
1 -CATCAATATCATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATC-CTGAAAA-GAATG
* * * * ** * * *
48091 AAGATT-TT-TGCTAGAATCCATATTTATCGCATTT--GAGGCATGAACTTAGACTTTA-CAAAA
63 GAGATTATTATG--A-AATTCATGTTTGTCTTATTTAAGAGACA-GAACTTTGATTTTATC-AAA
* * *
48151 ATTGGTGGGAAA-AATGCCCTTCTTGCAAAACCAAAG
123 ATTAGTGGGAAAGAATGCCTTTCTTGCAAAACCAAAA
* * * *
48187 CATCAATATCATGTATCCTAATGAGAAGACTATATTTATGGTGCCTAATCCTAAAAAGAATGGGG
1 CATCAATATCATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGAG
** *
48252 ATTAGTT-TGACTTTTCATATTTGTCTTATTTAAGAGACA-AACTTTGATT
66 ATTA-TTATGA-AATTCATGTTTGTCTTATTTAAGAGACAGAACTTTGATT
48301 CCGTCAAAAA
Statistics
Matches: 770, Mismatches: 201, Indels: 188
0.66 0.17 0.16
Matches are distributed among these distances:
155 1 0.00
156 4 0.01
157 41 0.05
158 366 0.48
159 310 0.40
160 42 0.05
161 6 0.01
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.31
Consensus pattern (159 bp):
CATCAATATCATGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGAG
ATTATTATGAAATTCATGTTTGTCTTATTTAAGAGACAGAACTTTGATTTTATCAAAATTAGTGG
GAAAGAATGCCTTTCTTGCAAAACCAAAA
Found at i:47413 original size:159 final size:158
Alignment explanation
Indices: 46796--47882 Score: 396
Period size: 159 Copynumber: 6.9 Consensus size: 158
46786 CAATATCGTG
* * * * *
46796 TATGGCGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAG
1 TATGGTGCCTAATCCTGAAAAGAATGGAGATTATTATGA-AATTCATGTTTGTCTTATTTAAGAG
* * * * * * * * * * * * * *
46861 ATA-AGCTATGATTCTATCCAAAATGGTGGAAAGAAAAACTTTTCATCCGACACCAAAGCATTAA
65 ACAGAACTTTGATTTTAT-CAAAATAGTGGAAAGAATAGCCTTTCTTGCAAAACCAAAACATCAA
*
46925 TGTCATGTATCCTATTAA-AAGAAC-AGTGTT
129 TGTCATGTATCCTAATAAGAAG-ACTA-TGTT
* * * * * ** * ** *
46955 TTTGGCT-CCCAATCTTGAGAAGAATGGAGATT-GTAACAAGAATCGATACTTGTCTTATTTAGG
1 TATGG-TGCCTAATCCTGAAAAGAATGGAGATTATTATGAA-ATTC-ATGTTTGTCTTATTTAAG
* * * ** * * ** * **
47018 GGA-TGAACTTTGATATTAAGGAAAATAG-GGCAAAGAAAAG-ATTTCCACGCAAAA-GAATGTC
63 AGACAGAACTTTGAT-TTTATCAAAATAGTGG-AAAGAATAGCCTTT-CTTGCAAAACCAA-AAC
* * * * * * *
47079 ATCAATATCATTTATCCTACTAAGGAGAATGTGCT
124 ATCAATGTCATGTATCCTAATAAGAAGACTATGTT
* * * *
47114 TATAGTGCCTAATCAC--AAAATGAA-GGAAGATCATTACT-AGAATCCATGTTTGTCTCATTTA
1 TATGGTGCCTAATC-CTGAAAA-GAATGG-AGATTATTA-TGA-AATTCATGTTTGTCTTATTTA
* * * *
47175 AG-G-CATTAACATAGACTTTA-CAAAAATTAGTGGGAAA-AAT-GCCTTTCTTGCAAAACCAAA
61 AGAGACA-GAACTTTGATTTTATC-AAAA-TAGT-GGAAAGAATAGCCTTTCTTGCAAAACCAAA
***
47235 ACATCAATGTTGCGTATCCTAATAAGAAGACTATGTT
122 ACATCAATGTCATGTATCCTAATAAGAAGACTATGTT
*
47272 TATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTT-TGAATATTCATGTTTGTCTTATTTAAGA
1 TATGGTGCCTAATCCTGAAAAGAATGGAGATTA-TTATGAA-ATTCATGTTTGTCTTATTTAAGA
* * *
47336 GACA-AACTTTGATTTTATCAAAATCAGTGGAAAGAATAGCCTTTCTTGCAACACCAAAGCTTCA
64 GACAGAACTTTGATTTTATCAAAAT-AGTGGAAAGAATAGCCTTTCTTGCAAAACCAAAACATCA
*
47400 ATGTCATGTATCCTAATGAAGGAA-A-TGTGTT
128 ATGTCATGTATCCTAAT-AA-GAAGACTATGTT
* * * * * *
47431 T-TAGGAT-CCCAATCATGAAAACAATGGAGACTATTACGAGAA-TCGATGCTTGTCTTATTTAA
1 TAT-GG-TGCCTAATCCTGAAAAGAATGGAGATTATTATGA-AATTC-ATGTTTGTCTTATTTAA
* * *
47493 G-GA-ATGAACTTTGATTTTATAAAAAATAG-GGCAAAGAA-AG-ATTTCCATT-CAAAA-GAAA
62 GAGACA-GAACTTTGATTTTAT-CAAAATAGTGG-AAAGAATAGCCTTT-C-TTGCAAAACCAAA
* * * * * * * * * **
47551 ATCATTAGTATCATTTATCCTATTGAGGAGAATGTGCC
122 A-CATCAATGTCATGTATCCTAATAAGAAGACTATGTT
* * * *
47589 TATAGTGCCTAATCAC--AAAATGAA-GGAAGATCATTACTGAAATCCATGTTTGTCTCATTT--
1 TATGGTGCCTAATC-CTGAAAA-GAATGG-AGATTATTA-TGAAATTCATGTTTGTCTTATTTAA
* * * * **
47649 GACG-CATGAACATAGACTTTA-CAAAAACTAGTGGGAAA-AAT-GCCTTTCATGTGAAACCAAA
62 GA-GACA-GAACTTTGATTTTATC-AAAA-TAGT-GGAAAGAATAGCCTTTCTTGCAAAACCAAA
* * * *
47710 ACGTCAATATCGA-GTATCCTAATGAGAAGACTATATT
122 ACATCAATGTC-ATGTATCCTAATAAGAAGACTATGTT
* * *
47747 TGA-GGTGCCTAATCCTGAAAAGAATGGGGATTAGTT-TGACTATTCATGTTTATCTTATTTAAG
1 T-ATGGTGCCTAATCCTGAAAAGAATGGAGATTA-TTATGA-AATTCATGTTTGTCTTATTTAAG
** * ** * *
47810 AGACA-AACTTTGATTCCATCAAAAATGGTGGAAAGGAA-AG-CTTCTCTTGTGACACCAAAGCA
63 AGACAGAACTTTGATTTTATC-AAAATAGTGGAAA-GAATAGCCTT-TCTTGCAAAACCAAAACA
47872 TCAATGTCATG
125 TCAATGTCATG
47883 CCCCTTATTG
Statistics
Matches: 678, Mismatches: 163, Indels: 174
0.67 0.16 0.17
Matches are distributed among these distances:
156 3 0.00
157 39 0.06
158 287 0.42
159 313 0.46
160 30 0.04
161 6 0.01
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.30
Consensus pattern (158 bp):
TATGGTGCCTAATCCTGAAAAGAATGGAGATTATTATGAAATTCATGTTTGTCTTATTTAAGAGA
CAGAACTTTGATTTTATCAAAATAGTGGAAAGAATAGCCTTTCTTGCAAAACCAAAACATCAATG
TCATGTATCCTAATAAGAAGACTATGTT
Found at i:48232 original size:476 final size:474
Alignment explanation
Indices: 46796--48889 Score: 2514
Period size: 476 Copynumber: 4.4 Consensus size: 474
46786 CAATATCGTG
* * * *
46796 TATGGCGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAG
1 TATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTATTCATGTTTGTCTTATTTAAGAG
* * * * * * * * *
46861 ATAAGCTATGATTCTATCCAAAATGGTGGAAAGAAAAACTTTTCATCCGACACCAAAGCATTAAT
66 ACAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAAT
* *** * * * * * * *
46926 GTCATGTATCCTATT-AAAAGAACAGTGTTTTTGGCTCCCAATCTTGAGAAGAATGGAGATTGTA
131 GTCATG-ACCCTATTGATGGGAA-TGTGATTTTGGTTCCCAATCTTGAAAAGAATGG-GACTATT
* * * *
46990 ACAAGAATCGATACTTGTCTTATTTAGGGGATGAACTTTGATATTAAGGAAAATAGGGCAAAGAA
193 ACAAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATATTATGAAAAATAGGGCAAAGAA
** * *
47055 AAGATTTCCACGCAAAAGAATGTCATCAATATCATTTATCCTACTAAGGAGAATGTGCTTATAGT
258 AAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGT
* *
47120 GCCTAATCACAAAATGAAGGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCATTAAC
323 GCCTAATCACAAAATGAAGGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAAC
* ***
47185 ATAGACTTTACAAAAATTAGTGGGAAAAATGCCTTTCTTGCAAAACCAAAACATCAATGTTGCGT
388 ATAGACTTTACAAAAATTAGTGGGAAAAATGCCTTTCTTGCAAAACCAAAACATCAATATCATGT
*
47250 ATCCTAATAAGAAGACTATGTT
453 ATCCTAATAAGAAGACTATATT
*
47272 TATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGAATATTCATGTTTGTCTTATTTAAGAG
1 TATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTATTCATGTTTGTCTTATTTAAGAG
** * * * * *
47337 ACAAACTTTGATTTTATC-AAAATCAGTGGAAAGAATAGCCTTTCTTGCAACACCAAAGCTTCAA
66 ACAAACTTTGATTCCATCAAAAAT-GGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAA
* * * * * * *
47401 TGTCATGTATCCTAATGAAGGAAATGTG-TTTTAGGATCCCAATCATGAAAACAATGGAGACTAT
130 TGTCATG-ACCCTATTGATGGGAATGTGATTTT-GGTTCCCAATCTTGAAAAGAATGG-GACTAT
* * * *
47465 TACGAGAATCGATGCTTGTCTTATTTAAGGAATGAACTTTGATTTTATAAAAAATAGGGCAAAG-
192 TACAAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATATTATGAAAAATAGGGCAAAGA
** * * * *
47529 AAAGATTTCCATTCAAAAGAAAATCATTAGTATCATTTATCCTATTGAGGAGAATGTGCCTATAG
257 AAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAG
*
47594 TGCCTAATCACAAAATGAAGGAAGATCATTACT-GAAATCCATGTTTGTCTCATTTGACGCATGA
322 TGCCTAATCACAAAATGAAGGAAGATCATTACTAG-AATCCATGTTTGTCTCATTTGAGGCATGA
* * ** *
47658 ACATAGACTTTACAAAAACTAGTGGGAAAAATGCCTTTCATGTGAAACCAAAACGTCAATATCGA
386 ACATAGACTTTACAAAAATTAGTGGGAAAAATGCCTTTCTTGCAAAACCAAAACATCAATATC-A
*
47723 -GTATCCTAATGAGAAGACTATATT
450 TGTATCCTAATAAGAAGACTATATT
*
47747 TGA-GGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTATTCATGTTTATCTTATTTAAGA
1 T-ATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTATTCATGTTTGTCTTATTTAAGA
* * *
47811 GACAAACTTTGATTCCATCAAAAATGGTGGAAAGGAAAGCTTCTCTTGTGACACCAAAGCATCAA
65 GACAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAA
*
47876 TGTCATGCCCCTTATTGATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAATAGGGACTATT
130 TGTCATGACCC-TATTGATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAAT-GGGACTATT
** * * * * * *
47941 ATTAGAAACAATGCTCGTCTTATTTAAGGGATAAACTTTTATATTATGGAAAATAGGGCAAAGAA
193 ACAAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATATTATGAAAAATAGGGCAAAGAA
* * * * * *
48006 AAGATTTCCATGCAAAAGAAAATCATTAATATTATTTCTCCGAATGAGGAGAATGTGCTTATAAT
258 AAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGT
* ** * * * *
48071 GCCTAATCACAAAATGAATGAAGATTTTTGCTAGAATCCATATTTATCGCATTTGAGGCATGAAC
323 GCCTAATCACAAAATGAAGGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAAC
* * * *
48136 TTAGACTTTACAAAAATTGGTGGGAAAAATGCCCTTCTTGCAAAACCAAAGCATCAATATCATGT
388 ATAGACTTTACAAAAATTAGTGGGAAAAATGCCTTTCTTGCAAAACCAAAACATCAATATCATGT
*
48201 ATCCTAATGAGAAGACTATATT
453 ATCCTAATAAGAAGACTATATT
* * *
48223 TATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTTTGACTTTTCATATTTGTCTTATTTAAGAG
1 TATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTATTCATGTTTGTCTTATTTAAGAG
* * * * * *
48288 ACAAACTTTGATTCCGTCAAAAAAGGAGCAAAAAAAAGCTTTTTTTGCGACACCAAAGCATCAAT
66 ACAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAAT
* * * * *
48353 GTTATGTCTCTTATTAATGGGCATGTGATTTTGGTTCCCAATCTTGAAAAGAATGGGGACTATTA
131 GTCATGAC-CCTATTGATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAAT-GGGACTATTA
* * * *
48418 CATGAATCGATGCTTGTCTTATTTAAGAGATGAACTTTGATTTTATGAAAAATAAGGGCTAAGAA
194 CAAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATATTATGAAAAAT-AGGGCAAAGAA
* * * *
48483 AAGAGTTCCGCACAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGT
258 AAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGT
* * ** * * * * * *
48548 GCCTAATTATAAAATGAATAAAGGTCATTCCTAGAATCCTTGTTTGTCTCGTTTGAGGCACGGAC
323 GCCTAATCACAAAATGAAGGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAAC
* * * * * * * *
48613 TTTGACTTTACAAAAATTGGTGGGAAAAATGCATTTCTTGCGAAACCAAAGCTTCAATATCGTGT
388 ATAGACTTTACAAAAATTAGTGGGAAAAATGCCTTTCTTGCAAAACCAAAACATCAATATCATGT
* *
48678 ATCTTAATAAGAAGAAC-ATGTT
453 ATCCTAATAAGAAG-ACTATATT
* * * * *
48700 TATGGTTCCCAATCCTGAAAAGAATGGGGATTAGTTTAACTATTCATGTTTAT-TTATTTAAGAC
1 TATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTATTCATGTTTGTCTTATTTAAGAG
** * *
48764 ACAAACTCCGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCGTGCGACACCAAAGCATCAAT
66 ACAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAAT
* * ** * * **
48829 GTCATGCCTCCTATTGATAGGAAAATGATATTGGTTCCTAAGATTGAAAAGAATAGGGACT
131 GTCATGAC-CCTATTGATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAAT-GGGACT
48890 CTTCATGTTT
Statistics
Matches: 1392, Mismatches: 209, Indels: 34
0.85 0.13 0.02
Matches are distributed among these distances:
474 3 0.00
475 411 0.30
476 733 0.53
477 243 0.17
478 2 0.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (474 bp):
TATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTATTCATGTTTGTCTTATTTAAGAG
ACAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAAT
GTCATGACCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAATGGGACTATTACA
AGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATATTATGAAAAATAGGGCAAAGAAAAG
ATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCC
TAATCACAAAATGAAGGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACATA
GACTTTACAAAAATTAGTGGGAAAAATGCCTTTCTTGCAAAACCAAAACATCAATATCATGTATC
CTAATAAGAAGACTATATT
Found at i:49081 original size:216 final size:216
Alignment explanation
Indices: 48698--49105 Score: 586
Period size: 216 Copynumber: 1.9 Consensus size: 216
48688 GAAGAACATG
* *
48698 TTTATGGTTCCCAATCCTGAAAAGAATGGGGATTAGTTTAACTATTCATGTTTATTTATTTAAGA
1 TTTATGGTGCCCAATCCTGAAAAGAATGGAGATTAGTTTAACTATTCATGTTTATTTATTTAAGA
* *
48763 CACAAACTCCGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCGTGCGACACCAAAGCATCAA
66 CACAAACTCCGATTCCATCAAAAACAGTGGAAAGAAAAGCCTTTCGTGCGACACCAAAGCATCAA
* *
48828 TGTCATGCCTCCTATTGATAGGAAAATGATATTGGTTCCTAA-GATTGAAAAGAATAGGGACTCT
131 TGTCATGCCTCCTATTGATAGGAAAATGATATTGGTTCCCAATCA-TGAAAAGAATAGGGACTCT
48892 TCATGTTTGTTTGAAGCCTATA
195 TCATGTTTGTTTGAAGCCTATA
* * *
48914 TTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTTTGACTATTCATGTTTGTCTTATTTAAG
1 TTTATGGTGCCCAATCCTGAAAAGAATGGAGATTAGTTTAACTATTCATGTTTAT-TTATTTAAG
* ** * * * *
48979 AGACAAACTTTGATTTCATCAAAAACAGTGGAAAGAAAA-CCTTTCTTGTGACCCCAAAGCATCA
65 ACACAAACTCCGATTCCATCAAAAACAGTGGAAAGAAAAGCCTTTCGTGCGACACCAAAGCATCA
* * ** * *
49043 ATGTCATGCCTCTTATTGATGGGAATGTGATTTTGGTTCCCAATCATGAAAAGAATGGGGACT
130 ATGTCATGCCTCCTATTGATAGGAAAATGATATTGGTTCCCAATCATGAAAAGAATAGGGACT
49106 ATTATAGGAA
Statistics
Matches: 168, Mismatches: 22, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
216 124 0.74
217 44 0.26
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.32
Consensus pattern (216 bp):
TTTATGGTGCCCAATCCTGAAAAGAATGGAGATTAGTTTAACTATTCATGTTTATTTATTTAAGA
CACAAACTCCGATTCCATCAAAAACAGTGGAAAGAAAAGCCTTTCGTGCGACACCAAAGCATCAA
TGTCATGCCTCCTATTGATAGGAAAATGATATTGGTTCCCAATCATGAAAAGAATAGGGACTCTT
CATGTTTGTTTGAAGCCTATA
Found at i:49817 original size:475 final size:475
Alignment explanation
Indices: 48904--51617 Score: 3627
Period size: 475 Copynumber: 5.7 Consensus size: 475
48894 ATGTTTGTTT
* * * *
48904 GAAGCCTATATTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTTTGACTATTCATGTTTGT
1 GAAGACTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTACTCATGTTTAT
* * * * *
48969 CTTATTTAAGAGACAAACTTTGATTTCATCAAAAACAGTGGAAAGAAAA-CCTTTCTTGTGACCC
66 CTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACAC
* *
49033 CAAAGCATCAATGTCATGCCTCTTATTGATGGGAATGTGATTTTGGTTCCCAATCATGAAAAGAA
131 CAAAGCATCAATGTCATGCCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAA
* * * *
49098 TGGGGACTATTATAGGAAACGATGCTCGTCTTATTTAAGGGATGAACTTTTA-TTTATGGAAAAT
196 TGGGGACTATTACAAGAATCGATGCTCGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAAT
* * *
49162 AGGGCAAAGAAAAGATTTTCATGAAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
261 AGGGCAAAGAAAAGATTTCCATGAAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAGAAT
* * * * * * *
49227 GTGCTTATCGTGCCTAATCATAAAATAAATAAAGATCATTCCTAGAAT-CATTGTTTGTCTCATT
326 GTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA-TGTTTATCGCATT
* *
49291 TGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAACGCATTTCTTGCGAAACCAAAGCT
390 TGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGC-TTTCTTGCGAAACCAAAGCT
*
49356 TCAATATCGTGCATCCTAATGA
454 TCAATATCGTGTATCCTAATGA
* * * * * * *
49378 GAAGAACT-TGTTTATAGTGCCCAATCCTGAAAAGAATGGGGAGTAGTATGGCTACTCATGTTTG
1 GAAG-ACTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTACTCATGTTTA
* * * * *
49442 CCTCATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGCAAAGAAAAGCTTTCCTTGCGACC
65 TCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACA
* * *
49507 CCAAAGCATCAATGTCTTGTCTCCTAATGATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGA
130 CCAAAGCATCAATGTCATGCCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGA
* * * *
49572 AT-GGGACTATTACAAGAATCGATGCTCGTCTTGTTTAAGGGAAGAACTTTAATTTTAGGGAAAA
195 ATGGGGACTATTACAAGAATCGATGCTCGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAA
* * * * *
49636 TAGGGCAAAGAAAAGATTTTCAAGAAAAAGAAAATCATCATTATCATTTCTCCTACTGAGGGGAA
260 TAGGGCAAAGAAAAGATTTCCATGAAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAGAA
* *
49701 TGTGCTTATAGTGCCTAATCACAAAATGAGTGAAGATCATTACTAGAATCCAAGTTTATCGCATT
325 TGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCGCATT
* * * * * * *
49766 TGAAGCATGAACCTAGACTTCACAAAAATTGATGGGAAAGATGACTTTCTTGTGAAACGAAAG-T
390 TGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATG-CTTTCTTGCGAAACCAAAGCT
* **
49830 GTCAATATTGCATATCCTAATGA
454 -TCAATATCGTGTATCCTAATGA
* * *
49853 GAAGACTATATTTGTGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTATTAATGTTTAT
1 GAAGACTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTACTCATGTTTAT
*
49918 CTTATTTAAGAGACAAACTTTGATTCCATCAAAAGCGGTGGAAAGAAAAGCTTTTCTTGCGACAC
66 CTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACAC
* *
49983 CAAAGCATCAATGTCATGTCTCATATTGATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAA
131 CAAAGCATCAATGTCATGCCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAA
* * * * * *
50048 TGGGGACTATTACGAGAAACAATGCTCATCTTATTTAAGGGATGAACTTTTATTTTATAGAAAAT
196 TGGGGACTATTACAAGAATCGATGCTCGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAAT
* * *
50113 AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCGTCAATATCATTTCTCCTAATGAGGAAAAT
261 AGGGCAAAGAAAAGATTTCCATGAAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAGAAT
50178 GTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCGCATTT
326 GTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCGCATTT
* * *
50243 GAGGCATGAACTTAGACTTTACAAAAATTGGTGGG-AAAATGCCCTTCTTGCAAAACCAAAGCAT
391 GAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATG-CTTTCTTGCGAAACCAAAGCTT
**
50307 CAATATCGCATATCCTAATGA
455 CAATATCGTGTATCCTAATGA
* * * * *
50328 GAACACTATATTTATGGTGGCTAATCTTGAAAAGAATGGGGATTAGTTTGACTATTTATGTTTAT
1 GAAGACTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTACTCATGTTTAT
*
50393 CTTATTTAAGAG--AAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTTTTGCGACAC
66 CTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACAC
*
50456 CAAAGCATCAATGTCATGCCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAT
131 CAAAGCATCAATGTCATGCCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAA
* * * *
50521 TGGGGACTATTACGAGAAAT-AATGCCCGTCTTATTTAAGGGATGAGCTTT--TTTTATGGAAAA
196 TGGGGACTATTACAAG-AATCGATGCTCGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAA
* * *
50583 TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAACATCAGTTCTCCTAATGAGGAGAA
260 TAGGGCAAAGAAAAGATTTCCATGAAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAGAA
*
50648 TGTGCTTATAGTGCCTAATCACAAAACGAATGAAGATCATTACTAGAATCCATGTTTATCGCATT
325 TGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCGCATT
* *
50713 TGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCCTTCTTGCAAAACCAAAG-T
390 TGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATG-CTTTCTTGCGAAACCAAAGCT
* *
50777 ATCAATATCGCGTATCCTAATCA
454 -TCAATATCGTGTATCCTAATGA
* * * *
50800 GAAGACTATATTTATGGTGGCTAATCTTGAAAAGAATGGGGATTAGTTTGACTACTTATATTTAT
1 GAAGACTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTACTCATGTTTAT
*
50865 CTTATTTAAGAG--AAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACAC
66 CTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACAC
* * *
50928 TAAAGCATCAATGTCAGGCCTCTTATTGATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAA
131 CAAAGCATCAATGTCATGCCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAA
* * * *
50993 TGGGGACTATTACGAGAAAT-GAGGCTCGTCTTATATAAGGGATAAACTTTGATTTTATGGAAAA
196 TGGGGACTATTACAAG-AATCGATGCTCGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAA
* * * * **
51057 TAAGGGCAAAAAAAATATTTCCATGCAAAAAAAAAATCATCAATATCATTTATATTAATGAGGAG
260 T-AGGGCAAAGAAAAGATTTCCATG-AAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAG
* * * * *
51122 AATGTGCTTATAGTGCCTAATCATAAAATGAATAAAGATCATTCCTAGAATCCATGTTTGTCTCA
323 AATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCGCA
** * * *
51187 TTTGAGGCACAAACTTAGACTTTAGAAAAAATTGGTGGGAAAAACGCATTTCTTGCGAAACCGAA
388 TTTGAGGCATGAACTTAGACTTTA-CAAAAATTGGTGGGAAAAATGC-TTTCTTGCGAAACCAAA
* *
51252 GCATCAATATCATGTATCCTAATGA
451 GCTTCAATATCGTGTATCCTAATGA
* * * * * * * *
51277 GAAGAAC-ATGTTTATGGTGCCCAATCCTGAAAACAATGGGGAGTAGTATGGCTACCCACGTTTA
1 GAAG-ACTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTACTCATGTTTA
* * * * *
51341 CCTTATTTAAGAGACAAACTTTGATTCCATAAAAAATGGTGGAAAGAAAAGCTTTTTTTGTGACA
65 TCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACA
** ** * * *
51406 ATAAAGCATCAATGTCATGTATCCTATTAAAGGGAATGTG-TTTTCGGTGT-CGAATCTTGAAAA
130 CCAAAGCATCAATGTCATGCCTCCTATTGATGGGAATGTGATTTT-GGT-TCCCAATCTTGAAAA
* * * * * *
51469 GAATGGAGAGTGTTACAAGAATTGATGCTTGTCTTATTTAAGAGATGAACTTTGATTTTATGGAA
193 GAATGGGGACTATTACAAGAATCGATGCTCGTCTTATTTAAGGGATGAACTTTGATTTTATGGAA
* * * *
51534 TATTA-GGCCAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGA-G-
258 -AATAGGGCAAAGAAAAGATTTCCATGAAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGA
* *
51596 GAATGTGCATAGAGTGCCTAAT
322 GAATGTGCTTATAGTGCCTAAT
51618 GGGAATGTTT
Statistics
Matches: 1996, Mismatches: 218, Indels: 51
0.88 0.10 0.02
Matches are distributed among these distances:
471 172 0.09
472 274 0.14
473 154 0.08
474 160 0.08
475 594 0.30
476 323 0.16
477 144 0.07
478 26 0.01
479 146 0.07
480 3 0.00
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (475 bp):
GAAGACTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTACTCATGTTTAT
CTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACAC
CAAAGCATCAATGTCATGCCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAA
TGGGGACTATTACAAGAATCGATGCTCGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAAT
AGGGCAAAGAAAAGATTTCCATGAAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAGAAT
GTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCGCATTT
GAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCTTTCTTGCGAAACCAAAGCTTC
AATATCGTGTATCCTAATGA
Found at i:50511 original size:157 final size:158
Alignment explanation
Indices: 48913--51003 Score: 518
Period size: 158 Copynumber: 13.2 Consensus size: 158
48903 TGAAGCCTAT
* * * *
48913 ATTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTTTGACTATTC-ATGTTTGTCTTATTTA
1 ATTT-TGGTGCCCAATCTTGAAAAGAATGGGGATTA-TTTGACTA-TCAATGTTTATCTTATTTA
* * * ** **
48977 AGAGACA-AACTTTGATTTCATCAAAAA-CAGTGGAAAGAAAA-CCTTTCTTGTGACCCCAAAGC
63 AGAG-CAGAACTTTGATTCCATCAAAAATCGGTGGAAAGAAAAGCTTTTCTTGCAAAACCAAAGC
* * * *
49039 ATCAATGTCATGCCTCTTATTGATGGGAATGTG
127 ATCAATATCATGCCTCCTAATGA-GGAAATGTG
* * * * * * **
49072 ATTTTGGTTCCCAATCATGAAAAGAATGGGGACTATTATAGGA--AACGATGCTCGTCTTATTTA
1 ATTTTGGTGCCCAATCTTGAAAAGAATGGGGATTATT-T--GACTATCAATGTTTATCTTATTTA
* * * ** * * * * * ** *
49135 AG-GGATGAACTTTTATT-TATGGAAAATAGG-GCAAAGAAAAGATTTTCATGAAAAAAAAAATC
63 AGAGCA-GAACTTTGATTCCATCAAAAATCGGTGGAAAGAAAAGCTTTTCTTGCAAAACCAAAGC
***
49197 ATCAATATCATTTATCCTAATGAGGAGAATGTG
127 ATCAATATCATGCCTCCTAATGAGGA-AATGTG
* * * * * * *** * * * *
49230 CTTATCGTGCCTAATCAT-AAAATAAATAAAGATCATTCCTAGA--ATCATTGTTTGTCTCATTT
1 ATTTTGGTGCCCAATCTTGAAAA-GAATGGGGATTATT--T-GACTATCAATGTTTATCTTATTT
* * * * * * * *
49292 GAG-GCACGAACTTAGACTT-TA-CAAAAATTGGTGGGAA-AAACGCATTTCTTGCGAAACCAAA
62 AAGAGCA-GAACTTTGA-TTCCATCAAAAATCGGTGGAAAGAAAAGCTTTTCTTGCAAAACCAAA
* * * *
49353 GCTTCAATATCGTGCATCCTAATGAGAAGAACT-TG
125 GCATCAATATCATGCCTCCTAATGAG--GAAATGTG
* * * * * ** *
49388 -TTTATAGTGCCCAATCCTGAAAAGAATGGGGAGTAGTATGGCTACTC-ATGTTTGCCTCATTTA
1 ATTT-TGGTGCCCAATCTTGAAAAGAATGGGGATTA-TTTGACTA-TCAATGTTTATCTTATTTA
* * * **
49451 AGAGACA-AACTTTGATTCCATCAAAAA-CGGTGCAAAGAAAAGCTTTCCTTGCGACCCCAAAGC
63 AGAG-CAGAACTTTGATTCCATCAAAAATCGGTGGAAAGAAAAGCTTTTCTTGCAAAACCAAAGC
* * * *
49514 ATCAATGTCTTGTCTCCTAATGATGGGAATGTG
127 ATCAATATCATGCCTCCTAATGA-GGAAATGTG
* * ** ** * * ** *
49547 ATTTTGGTTCCCAATCTTGAAAAGAAT-GGGACTATTACAAGAATCGATGCTCGTCTTGTTTAAG
1 ATTTTGGTGCCCAATCTTGAAAAGAATGGGGATTATT-TGACTATCAATGTTTATCTTATTTAAG
* * * ** *** * * * ** * ** *
49611 GGAAGAACTTTAATTTTAGGGAAAATAGG-GCAAAGAAAAGATTTTCAAGAAAAAGAAAATCATC
65 AGCAGAACTTTGATTCCATCAAAAATCGGTGGAAAGAAAAGCTTTTCTTGCAAAACCAAAGCATC
* ** * *
49675 ATTATCATTTCTCCTACTGAGGGGAATGTG
130 AATATCATGCCTCCTAATGA-GGAAATGTG
* * * * ** * ** * **
49705 CTTATAGTGCCTAATC-ACAAAATGAGTGAAGATCA-TT-ACTAGAATCCAA-GTTTATCGCATT
1 ATTTTGGTGCCCAATCTTGAAAA-GAATGGGGATTATTTGACT---AT-CAATGTTTATCTTATT
* * * * * ** ** *
49766 TGA-AGCATGAACCTAGACTT-CA-CAAAAATTGATGGGAAAGATGA-C-TTTCTTGTGAAACGA
61 TAAGAGCA-GAACTTTGA-TTCCATCAAAAATCGGT-GGAAAGAAAAGCTTTTCTTGCAAAACCA
** * *
49826 AAGTGTCAATAT--TGCATATCCTAATGA-GAAGACTAT-
123 AAGCATCAATATCATGC--CTCCTAATGAGGAA-A-TGTG
* * *
49862 ATTTGTGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTATTAATGTTTATCTTATTTAA
1 ATTT-TGGTGCCCAATCTTGAAAAGAATGGGGATTA-TTTGACTATCAATGTTTATCTTATTTAA
* * *
49927 GAGACA-AACTTTGATTCCATC-AAAAGCGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
64 GAG-CAGAACTTTGATTCCATCAAAAATCGGTGGAAAGAAAAGCTTTTCTTGCAAAACCAAAGCA
* * * * *
49990 TCAATGTCATGTCTCATATTGATGGGAATGTG
128 TCAATATCATGCCTCCTAATGA-GGAAATGTG
* * * ** * * *
50022 ATTTTGGTTCCCAATCTTGAAAAGAATGGGGACTATTACGAGAAACAATGCTCATCTTATTTAAG
1 ATTTTGGTGCCCAATCTTGAAAAGAATGGGGATTATT-TGACTATCAATGTTTATCTTATTTAAG
* * ** * * * * * ** * *
50087 -GGATGAACTTTTATTTTAT-AGAAAATAGG-GCAAAGAAAAGATTTCCATGCAAAAGAAAATCG
65 AGCA-GAACTTTGATTCCATCA-AAAATCGGTGGAAAGAAAAGCTTTTCTTGCAAAACCAAAGCA
**
50149 TCAATATCATTTCTCCTAATGAGGAAAATGTG
128 TCAATATCATGCCTCCTAATGAGG-AAATGTG
* * * * ** ** * * **
50181 CTTATAGTGCCTAATC-ACAAAATGAATGAAGATCA-TT-ACTAGAATCCATGTTTATCGCATTT
1 ATTTTGGTGCCCAATCTTGAAAA-GAATGGGGATTATTTGACT---ATCAATGTTTATCTTATTT
* * * * **
50243 GAG-GCATGAACTTAGACTT-TA-CAAAAATTGGTGG---GAAAATGCCCTTCTTGCAAAACCAA
62 AAGAGCA-GAACTTTGA-TTCCATCAAAAATCGGTGGAAAGAAAA-GCTTTTCTTGCAAAACCAA
* *
50302 AGCATCAATATC--GCATATCCTAATGA-GAACACTAT-
124 AGCATCAATATCATGC--CTCCTAATGAGGAA-A-TGTG
* * **
50337 ATTTATGGTGGCTAATCTTGAAAAGAATGGGGATTAGTTTGACTATTTATGTTTATCTTATTTAA
1 ATTT-TGGTGCCCAATCTTGAAAAGAATGGGGATTA-TTTGACTATCAATGTTTATCTTATTTAA
* * *
50402 GAG-A-AACTTTGATTCCATCAAAAA-CGGTGGAAAGAAAAGCTTTTTTTGCGACACCAAAGCAT
64 GAGCAGAACTTTGATTCCATCAAAAATCGGTGGAAAGAAAAGCTTTTCTTGCAAAACCAAAGCAT
* * *
50464 CAATGTCATGCCTCCTATTGATGGGAATGTG
129 CAATATCATGCCTCCTAATGA-GGAAATGTG
* * * * ** ****
50495 ATTTTGGTTCCCAATCTTGAAAAGATTGGGGACTATTACGAGAAAT-AATGCCCGTCTTATTTAA
1 ATTTTGGTGCCCAATCTTGAAAAGAATGGGGATTATT-TGA-CTATCAATGTTTATCTTATTTAA
* * ** ** * * * * * ** *
50559 G-GGATGAGCTTT--TTTTATGGAAAATAGG-GCAAAGAAAAGATTTCCATGCAAAAGAAAATCA
64 GAGCA-GAACTTTGATTCCATCAAAAATCGGTGGAAAGAAAAGCTTTTCTTGCAAAACCAAAGCA
* *
50620 TCAACATCA-GTTCTCCTAATGAGGAGAATGTG
128 TCAATATCATG-CCTCCTAATGAGGA-AATGTG
* * * * ** ** * * **
50652 CTTATAGTGCCTAATC-ACAAAACGAATGAAGATCA-TT-ACTAGAATCCATGTTTATCGCATTT
1 ATTTTGGTGCCCAATCTTGAAAA-GAATGGGGATTATTTGACT---ATCAATGTTTATCTTATTT
* * * * * * **
50714 GAG-GCATGAACTTAGACTT-TA-CAAAAATTGGTGGGAA-AAATGCCCTTCTTGCAAAACCAAA
62 AAGAGCA-GAACTTTGA-TTCCATCAAAAATCGGTGGAAAGAAAAGCTTTTCTTGCAAAACCAAA
* ** ** * *
50775 GTATCAATATCGCGTATCCTAATCA-GAAGACTAT-
125 GCATCAATATCATGCCTCCTAATGAGGAA-A-TGTG
* * * *
50809 ATTTATGGTGGCTAATCTTGAAAAGAATGGGGATTAGTTTGACTA-CTTATATTTATCTTATTTA
1 ATTT-TGGTGCCCAATCTTGAAAAGAATGGGGATTA-TTTGACTATC-AATGTTTATCTTATTTA
* * * *
50873 AGAG-A-AACTTTGATTCCATCAAAAA-CGGTGGAAAGAAAAGCTTTTCTTACGACACTAAAGCA
63 AGAGCAGAACTTTGATTCCATCAAAAATCGGTGGAAAGAAAAGCTTTTCTTGCAAAACCAAAGCA
* * * * *
50935 TCAATGTCAGGCCTCTTATTGATGGGAATGTG
128 TCAATATCATGCCTCCTAATGA-GGAAATGTG
* *
50967 ATTTTGGTTCCCAATCTTGAAAAGAATGGGGACTATT
1 ATTTTGGTGCCCAATCTTGAAAAGAATGGGGATTATT
51004 ACGAGAAATG
Statistics
Matches: 1349, Mismatches: 452, Indels: 265
0.65 0.22 0.13
Matches are distributed among these distances:
154 3 0.00
155 17 0.01
156 53 0.04
157 366 0.27
158 530 0.39
159 325 0.24
160 45 0.03
161 10 0.01
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (158 bp):
ATTTTGGTGCCCAATCTTGAAAAGAATGGGGATTATTTGACTATCAATGTTTATCTTATTTAAGA
GCAGAACTTTGATTCCATCAAAAATCGGTGGAAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCA
ATATCATGCCTCCTAATGAGGAAATGTG
Found at i:52334 original size:764 final size:764
Alignment explanation
Indices: 50865--52362 Score: 2210
Period size: 764 Copynumber: 2.0 Consensus size: 764
50855 TTATATTTAT
* * *
50865 CTTATTTAAGAGAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACTA
1 CTTATTTAAGAGAAACTTTGATTCCATCAAAAAAGGTGGAAAGAAAAGCTTTTCTGACGACACCA
* ** *
50930 AAGCATCAATGTCAGGCCTCTTATTGATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAATG
66 AAGCATCAATATCAGGCCTCCAATTAATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAATG
* * *
50995 GGGACTATTACGAGAAATGAGGCTCGTCTTATATAAGGGATAAACTTTGATTTTATGGAAAATAA
131 GGGACTATCACGAGAAATCAGGCTCGTCTTATATAAGGGATAAACTTTGATTTCATGGAAAATAA
* * * *
51060 GGGCAAAAAAAATATTTCCATGCAAAAAAAAAATCATCAATATCATTTATATTAATGAGGAGAAT
196 CGACAAAAAAAAGATTTCCAT-CAAAAAAAAAATCACCAATATCATTTATATTAATGAGGAGAAT
51125 GTGCTTATAGTGCCTAATCATAAAATGAATAAAGATCATTCCTAGAATCCATGTTTGTCTCATTT
260 GTGCTTATAGTGCCTAATCATAAAATGAATAAAGATCATTCCTAGAATCCATGTTTGTCTCATTT
*
51190 GAGGCACAAACTTAGACTTTAGAAAAAATTGGTGGGAAAAACGCATTTCTTGCGAAACCGAAGCA
325 GAGGCACAAACTTAGACTTTAGAAAAAATTGGTGGGAAAAACGCATTTCTTGCGAAACCAAAGCA
* *
51255 TCAATATCATGTATCCTAATGAGAAGAACATGTTTATGGTGCCCAATCCTGAAAACAATGGGGAG
390 TCAATATCATGCATCCTAATGAGAAGAACATGTTTACGGTGCCCAATCCTGAAAACAATGGGGAG
* ** *
51320 TAGTATGGCTACCCACGTTTACCTTATTTAAGAGACAAACTTTGATTCCATAAAAAATGGTGGAA
455 TAGTATGGCTACCCACGTTTACCTCATTTAAGAGACAAACTTTGATTCCATAAAAAACAGTGCAA
* * *
51385 AGAAAAGCTTTTTTTGTGACAATAAAGCATCAATGTCATGTATCCTATTAAAGGGAATGTGTTTT
520 AGAAAAGCTTTTCTTGCGACAACAAAGCATCAATGTCATGTATCCTATTAAAGGGAATGTGTTTT
* * * * **
51450 CGGTGTCGAATCTTGAAAAGAATGGAGAGTGTTACAAGAATTGATGCTTGTCTTATTTAAGAGAT
585 CGGTGTCCAATCTTGAAAAGAATGGAGACTATTACAAGAATCGATGCTCATCTTATTTAAGAGAT
* * * *
51515 GAACTTTGATTTTATGGAATATTAGGCCAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATAT
650 GAACTTTGATTTTATGGAATAATAGGCAAAGAAAAGACTTCCATGCAAAAGAAAATCATCAATAT
*
51580 CATTTCTCCTAATGAGGAATGTGCATAGAGTGCCTAATGGGAATGTTTGC
715 CATTTATCCTAATGAGGAATGTGCATAGAGTGCCTAATGGGAATGTTTGC
* *
51630 CTTATTTAAGAGACAAAACTTTGATTCCATCAAAAAAGGTGGAGAGAAAAGCTTTTCTGGCGACA
1 CTTATTTAAGAG---AAACTTTGATTCCATCAAAAAAGGTGGAAAGAAAAGCTTTTCTGACGACA
* * *
51695 CCAAAGCATCAATATTATGTCTCCAATTAATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGA
63 CCAAAGCATCAATATCAGGCCTCCAATTAATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGA
* * *
51760 ATGGGGACTATCACGAG-AATCAGTGC-CGTCTTATTTGAGGGATAAACTTCT-ATTTCCT-GAA
128 ATGGGGACTATCACGAGAAATCAG-GCTCGTCTTATATAAGGGATAAACTT-TGATTTCATGGAA
* *
51821 TAATAACGACAAAGAAAAGATTTCCAT-ACAAAAAAAATCACCAATATCATTTAT-TCTAATGAG
191 -AATAACGACAAAAAAAAGATTTCCATCAAAAAAAAAATCACCAATATCATTTATAT-TAATGAG
* *
51884 GAGAATGTGCTTTTCGTGCCTAATCATAAAATGAATAAAGATCATTCCTAGAAT-CATTGTTTGT
254 GAGAATGTGCTTATAGTGCCTAATCATAAAATGAATAAAGATCATTCCTAGAATCCA-TGTTTGT
*
51948 CTCATTTGAGGCACAAACTTAGACTTTA-CAAAAATTGGTGGGAAAAACGCATTTCTTGCGAAAC
318 CTCATTTGAGGCACAAACTTAGACTTTAGAAAAAATTGGTGGGAAAAACGCATTTCTTGCGAAAC
* * * *
52012 CAAAGCTTCAATATCATGCATCCTAATGAGAAGAACATGTTTACGGTGCCTAATCTTGAAAAGAA
383 CAAAGCATCAATATCATGCATCCTAATGAGAAGAACATGTTTACGGTGCCCAATCCTGAAAACAA
* * *
52077 TGGGGAGTAGTATGGCTACTCATGTTTGCCTCATTTAAGAGACAAACTTTGATTCCATAAAAAAC
448 TGGGGAGTAGTATGGCTACCCACGTTTACCTCATTTAAGAGACAAACTTTGATTCCATAAAAAAC
* * * * *
52142 AGTGCAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGT-CCTCTATTGATGGGAA
513 AGTGCAAAGAAAAGCTTTTCTTGCGACAACAAAGCATCAATGTCATGTATC-CTATTAAAGGGAA
* **
52206 TGTGATTTT-GGT-TCCCAATCTTGAAAAGAATGGGGACTATTATGAGAATCGATGCTCATCTTA
577 TGTG-TTTTCGGTGT-CCAATCTTGAAAAGAATGGAGACTATTACAAGAATCGATGCTCATCTTA
* *
52269 TTTAAGGGATGAACTTTTATTTTATGGAA-AATAGGGCAAAGAAAAGACTTCCATGCAAAAGAAA
640 TTTAAGAGATGAACTTTGATTTTATGGAATAATA-GGCAAAGAAAAGACTTCCATGCAAAAGAAA
52333 ATCATCAATATCATTTATCCTAATGAGGAA
704 ATCATCAATATCATTTATCCTAATGAGGAA
52363 AATGCACTTA
Statistics
Matches: 656, Mismatches: 65, Indels: 25
0.88 0.09 0.03
Matches are distributed among these distances:
763 5 0.01
764 338 0.52
765 135 0.21
766 3 0.00
767 53 0.08
768 122 0.19
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (764 bp):
CTTATTTAAGAGAAACTTTGATTCCATCAAAAAAGGTGGAAAGAAAAGCTTTTCTGACGACACCA
AAGCATCAATATCAGGCCTCCAATTAATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAATG
GGGACTATCACGAGAAATCAGGCTCGTCTTATATAAGGGATAAACTTTGATTTCATGGAAAATAA
CGACAAAAAAAAGATTTCCATCAAAAAAAAAATCACCAATATCATTTATATTAATGAGGAGAATG
TGCTTATAGTGCCTAATCATAAAATGAATAAAGATCATTCCTAGAATCCATGTTTGTCTCATTTG
AGGCACAAACTTAGACTTTAGAAAAAATTGGTGGGAAAAACGCATTTCTTGCGAAACCAAAGCAT
CAATATCATGCATCCTAATGAGAAGAACATGTTTACGGTGCCCAATCCTGAAAACAATGGGGAGT
AGTATGGCTACCCACGTTTACCTCATTTAAGAGACAAACTTTGATTCCATAAAAAACAGTGCAAA
GAAAAGCTTTTCTTGCGACAACAAAGCATCAATGTCATGTATCCTATTAAAGGGAATGTGTTTTC
GGTGTCCAATCTTGAAAAGAATGGAGACTATTACAAGAATCGATGCTCATCTTATTTAAGAGATG
AACTTTGATTTTATGGAATAATAGGCAAAGAAAAGACTTCCATGCAAAAGAAAATCATCAATATC
ATTTATCCTAATGAGGAATGTGCATAGAGTGCCTAATGGGAATGTTTGC
Found at i:52514 original size:476 final size:476
Alignment explanation
Indices: 51622--61626 Score: 12067
Period size: 476 Copynumber: 21.0 Consensus size: 476
51612 CCTAATGGGA
* * *
51622 ATGTTTGCCTTATTTAAGAGACAAAACTTTGATTCCATCAAAAAAGGTGGAGAGAAAAGCTTTTC
1 ATGTTTGTCTTATTTAAGAGAC-AAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTC
* * * * *
51687 TGGCGACACCAAAGCATCAATATTATGTCTCCAATTAATGGGAATGTGATTTTGGTTCCCAATCT
65 TTGCGACACCAAAGCATCAATGTCATGTCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCT
* * * *
51752 TGAAAAGAATGGGGACTATCACGAGAATC-AGTGC-CGTCTTATTTGAGGGATAAACTTCT-ATT
130 TGAAAAGAATGGGGACTATTACGAGAATCGA-TGCTTGTCTTATTTAAGGGATGAACTT-TGATT
** * * * * *
51814 TCCT-GAATAATAACGACAAAGAAAAGATTTCCATACAAAA-AAAATCACCAATATCATTTATTC
193 TTATGGAA-AAT-AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCC
* * * * *
51877 TAATGAGGAGAATGTGCTTTTCGTGCCTAATCATAAAATGAATAAAGATCATTCCTAGAAT-CAT
256 TAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA-
* * *
51941 TGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAAAACGCATTTCTTG
320 TGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTG
* * * * *
52006 CGAAACCAAAGCTTCAATATCATGCATCCTAATGAGAAGAACATGTTTACGGTGCCTAATCTTGA
385 CGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGAACATGTTTATGGTGCCTAATCCTGA
* *
52071 AAAGAATGGGGAGTAGTATGGCTACTC
450 AAAGAATGGGGATTAGTATGGCTATTC
* * * * *
52098 ATGTTTGCCTCATTTAAGAGACAAACTTTGATTCCATAAAAAACAGTGCAAAGAAAAGCTTTTCT
1 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCT
*
52163 TGCGACACCAAAGCATCAATGTCTTGTC-CTCTATTGATGGGAATGTGATTTTGGTTCCCAATCT
66 TGCGACACCAAAGCATCAATGTCATGTCTC-CTATTGATGGGAATGTGATTTTGGTTCCCAATCT
* ** *
52227 TGAAAAGAATGGGGACTATTATGAGAATCGATGCTCATCTTATTTAAGGGATGAACTTTTATTTT
130 TGAAAAGAATGGGGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT
*
52292 ATGGAAAATAGGGCAAAGAAAAGACTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
195 ATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
* ** *
52357 GAGGAAAATGCACTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTT
260 GAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
* * *
52422 GTCTCATTTGAGGCACGAATTTAAACTTTACAAAAATTGGTAGGG-AAAATGCCTTTCTTGTGAA
325 GTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT-GGGAAAAATGCCTTTCTTGCGAA
* * *
52486 ACCAGAA-CATCAATATCGTGTATCCTAATTAGAAGAACATGTTTATGGCGCCTAATCCTAAAAA
389 ACCA-AAGCATCAATATCGTGTATCCTAATGAGAAGAACATGTTTATGGTGCCTAATCCTGAAAA
**
52550 GAATGGGGATTAGTATGAATATTC
453 GAATGGGGATTAGTATGGCTATTC
* * * * * * * *
52574 ATGTTTGTCTTATTTAAGAGATAAGCTATAATTCTATCCAAAATGGTGGAAAGAAAAGCTTTTCA
1 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* *** * * *
52639 TGCGACACCAAAGCATCAATGTCATGTATCCTATT-AAAAGAACAGTGTTTTTGGCTCCCAATCT
66 TGCGACACCAAAGCATCAATGTCATGTCTCCTATTGATGGGAA-TGTGATTTTGGTTCCCAATCT
* * * * ** * * *
52703 TGAGAAGAATGGAGATTTTTTATAAGAATCGATACTTGTCTTATTTAGGGGATGAACTTTGATAT
130 TGAAAAGAATGGGGA-CTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTT
* * * * *
52768 TAAGGAAAATAGGGCAAAGAAAAGATTTCCACGCAAAAGAATATTATCAATATCATTTATCCTAC
194 TATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAA
*
52833 TGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAAGGAAGATCATTACTAGAATCCATGTT
259 TGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTT
* * * * **
52898 TGTCTCATTTGAGGCATGAA-TATAGACTTTACATAAATTAGTGGGAAAAATACCTTTCTTGTAA
324 TGTCTCATTTGAGGCACGAACT-TAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGA
* * * * * *
52962 AACTAAAACATCGATATTGCGTATCCTAATAAGAAG-ACTATGTTTATGGTGCCTAATCCTGAAA
388 AACCAAAGCATCAATATCGTGTATCCTAATGAGAAGAAC-ATGTTTATGGTGCCTAATCCTGAAA
* * ** *
53026 AGAATGGGAATTAGTTTGAATATTT
452 AGAATGGGGATTAGTATGGCTATTC
* * * * * *
53051 GTGTTTGTCTTATTTAAGAGACAAACTTTAATTCTATCAAAAACAGTGGAAAGAATAGCCTTTCT
1 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* * * * * * * * * * *
53116 TGCAACACCAAAGCTTCAATGTCATGTATCCTAATGAAGGAAAGGTG-TTTTAAGTTTCAAATCA
66 TGCGACACCAAAGCATCAATGTCATGTCTCCTATTGATGGGAATGTGATTTT-GGTTCCCAATCT
* * * * * *
53180 TAAAAACAATGGAGACTATTACGCGAATCGACGCTTGTCTTATTTAAGGAATGAACTTTGATTTT
130 TGAAAAGAATGGGGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT
* * *
53245 ATGAAAAATAGGGCAAAGAAAAGATTTCCATTCAAAAGAAAATCATCAATATCATTTATCCTATT
195 ATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
* * * *
53310 GAGGAAAATGTGCTTATAGTGCCTAATCACAAAATGAAGGAAGTTCATTACTAGAATCAATGTTT
260 GAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
* * ** * * *
53375 CTCTCATTTGACGCATAAACATAGGA-TTTACAAAAATTAGTGGGAAAAATGCCTTTCTTGTGAA
325 GTCTCATTTGAGGCACGAACTTA-GACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAA
* ** * *
53439 ACCAAAACATCAATATCGCATATCCTAATGAGAAG-ACTATATTTGTGGTGCCTAATCCTGAAAA
389 ACCAAAGCATCAATATCGTGTATCCTAATGAGAAGAAC-ATGTTTATGGTGCCTAATCCTGAAAA
* * *
53503 GAATGGGGATTAGTTTGACTATAC
453 GAATGGGGATTAGTATGGCTATTC
** *
53527 ATGTTCATCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCTTTTCT
1 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* ** * *
53592 TGCGATAATAAAGCATCAATGTTATGTCTCCTATTAATGGGAATGTGATTTTGGTTCCCAATCTT
66 TGCGACACCAAAGCATCAATGTCATGTCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTT
* * * *
53657 AAAAAGAAT-GGCATCTATTACGAGAATCGATGCTCGTCTTATTTAAGGGATGAACTTTTATTTT
131 GAAAAGAATGGGGA-CTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT
* *
53721 ATGGAAAATAGGGAAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCT-CTGAA
195 ATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCT-AA
* *
53785 TGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATTATTACTAGAATCTATGTT
259 TGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTT
* * * ** * *
53850 TATCGCTTTTGAGGCGTGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCCTTCTTGCAAA
324 TGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAA
* **
53915 ACCAAAGCATCAATATCGTGTATCCTAATGAAAAG-ACTAAATTTATGGTGCCTAATCCTGAAAA
389 ACCAAAGCATCAATATCGTGTATCCTAATGAGAAGAAC-ATGTTTATGGTGCCTAATCCTGAAAA
* * **
53979 GAATGTGGATTAGTTTCACTATTC
453 GAATGGGGATTAGTATGGCTATTC
* * * *
54003 ATGTTTGTCTTATTTAAGAGACAAACCTTGATTCCGTCAAAAAAGGTGGAAATAAAAGCTTTTCT
1 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* * * *
54068 TGCGACACCAAAGCTTCAATGTTATGTCTCCTATTAATGGGAATGTGATTTTGGTTCTCAATCTT
66 TGCGACACCAAAGCATCAATGTCATGTCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTT
* * *
54133 GAAAAGAATGGGGACTATTAC-ATAAATCGATGCTCGTCTTATTTAAGGGATGGACTTTGATTTT
131 GAAAAGAATGGGGACTATTACGA-GAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT
* *
54197 ATGGAAAATAAGGGCAAAGAAAAGATTTCCACGCAAAAAAAAAATCATCAATATCATTTATCCTA
195 ATGGAAAAT-AGGGCAAAGAAAAGATTTCCATGC-AAAAGAAAATCATCAATATCATTTATCCTA
* * * * * **
54262 ATGAGGAGAATGTGCTTATAGTGCCTAATTATAAAATGAATAAAGGTCATTCCTAGAATCTTTGT
258 ATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
* *
54327 TTGTCTCATTTGAGGCACGGACTTAGACTTTACAAAAATTGGTGGGAAAAATGCATTTCTTGCGA
323 TTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGA
* * * * *
54392 AACCAAAGCTTCAATATCATGTATCCTAAGGAGAAGAACATGTTTATGGTACCCAATCCTGAAAA
388 AACCAAAGCATCAATATCGTGTATCCTAATGAGAAGAACATGTTTATGGTGCCTAATCCTGAAAA
* *
54457 GAATGGGGATTAGTTTGACTATTC
453 GAATGGGGATTAGTATGGCTATTC
* * * *
54481 ATGTTTATCTTATCTAAGACACAAACTTTGATTCCTTCAAAAACGGTGGAAAGAAAAGCTTTTCT
1 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* * * *
54546 TGCGACACCAAAGCATCAATGTCATGCCTCCTATTGATGGGAATGTGATATTGGTTCCTAAGCTT
66 TGCGACACCAAAGCATCAATGTCATGTCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTT
* * ** * * *
54611 GAAAAGACTAGGGACTCCTACGAGAAACGATGCTCGTCTTATTTAAGGGATGAACTTTTATTTTA
131 GAAAAGAATGGGGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA
* * *
54676 TGGAAAATA-GGAAGAAGAAAAGATTTCCATGCCAAAGAAAATCATCAATATCATTTCTCCTAAT
196 TGGAAAATAGGGCA-AAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
* *
54740 GAGGAGAATCTGCTTATAGTTCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
260 GAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
* * * * * * *
54805 ATCGCATTTGAGGCATGAACTTAGACTTTTCAACAATTGGTGGGAAAAATGCCCTTCTTGCAAAA
325 GTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAA
* * *
54870 CCAAAGCATCAATATCGCGTATCCTAATGAGAA-CACTATATTTATGGTGCCTAATCCTGAAAAG
390 CCAAAGCATCAATATCGTGTATCCTAATGAGAAGAAC-ATGTTTATGGTGCCTAATCCTGAAAAG
* * *
54934 AATGGAGATTAGTTTGACTATTC
454 AATGGGGATTAGTATGGCTATTC
* *
54957 GTGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCCTTTCT
1 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* * * * *
55022 TGCAACACCAAAGCATCAATGTCATGCCTCTTATTGATGGGAACGAGATTTTGGTTCCCAATCTT
66 TGCGACACCAAAGCATCAATGTCATGTCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTT
* * * * *
55087 GAAAAGAATGGGGACTACTATGGGAAAT-GATGCTCGTCTTATTTAAGGGATGAACTTTTATTTT
131 GAAAAGAATGGGGACTATTACGAG-AATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT
* *
55151 ATGGAAAATAGGGCAAAGAAAAGATTTTCTTGCAAAAGAAAATCATCAATATCATTTCA-CCTAA
195 ATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTT-ATCCTAA
55215 TGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTT
259 TGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTT
* * * ** * ***
55280 TATCGCATTTGTGGCTTGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCCTTCTTTTAAA
324 TGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAA
* * *
55345 ACCAAAGCATCAATATTGCGTATCCTAATGAGAA-AACTATATTTATGGTGCCTAATCCTGAAAA
389 ACCAAAGCATCAATATCGTGTATCCTAATGAGAAGAAC-ATGTTTATGGTGCCTAATCCTGAAAA
* *
55409 GAATGGGGATTAGTTTGACTATTC
453 GAATGGGGATTAGTATGGCTATTC
* *
55433 ATGTTTGTCTTATTTGAGAGACCAAACTTTGATTCCATCAAAAAAGGTGGAAAGAAAAGCTTTTC
1 ATGTTTGTCTTATTTAAGAGA-CAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTC
* * * * *
55498 TTGCGACACCAAAGCATCAATGTTATGTCTCCAATTAATGGGAATGTGATTTCGGTTCCCAAGCT
65 TTGCGACACCAAAGCATCAATGTCATGTCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCT
* * *
55563 TGAAAAGAATGGGGACTATTACGAGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTAATTTC
130 TGAAAAGAATGGGGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT
* * *
55628 ATGAAAAATAACGGCAAAGAAAAGATTTCCATGCAAAA-AAAACCATCAATATCATTTATCCTAA
195 ATGGAAAAT-AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAA
* * * * *
55692 TGAGGA-AATTGTGCTTATAGTGCCTAATCATAAAATGTATAAAGATCATTCCTAGAATCCTTGT
259 TGAGGAGAA-TGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
* * *
55756 TTGTCTCATTTGAGGCACGAACTTAGACTTTA-AAAAACTTGGTGGG-AAAACGCATTTCTTGTG
323 TTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAA-TTGGTGGGAAAAATGCCTTTCTTGCG
* * * * * * *
55819 AAACCGAAGCTTC-A-A---TGCATCCTAATGAGAGGAACATGTTTATGGTACCCAATCCTAAAA
387 AAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGAACATGTTTATGGTGCCTAATCCTGAAA
*
55879 AGAATGGGGAGTAGTATGGCTACTT-
452 AGAATGGGGATTAGTATGGCTA-TTC
* * * *
55904 ATGTTTGCCCTATTTAAGAGATAAACTTTGATTCCATCAAAAACGGTGCAAAGAAAAGCTTTTCT
1 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* * *
55969 TGCGACCCCAAAGCATCAATGTCTTGTCTCCTATTGATGAGAATGTGATTTTGG-TCCTCAATCT
66 TGCGACACCAAAGCATCAATGTCATGTCTCCTATTGATGGGAATGTGATTTTGGTTCC-CAATCT
* * * ** *
56033 T-AAAATGAATGGGGTCTATTACGAGAATTGATACTCATCTTATTTAAGGGATGAACTTTTATTT
130 TGAAAA-GAATGGGGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTT
* * * * * ** * *
56097 TATGGGAAATAAGGCAAAGAAAAGATTTTCGTGAAAAAGAAAATCATCGTTATCATTTCTCCTAC
194 TATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAA
*
56162 TGAGGGGGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
259 TGA-GGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
* * * * * * * * * * * *
56227 TTTTCGCATTTGAAGCATGAACCTAGACCTCACAAAGATAGGTGGGAAAGATGCTTTTCTTGTGA
323 TTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGA
* * ** * *
56292 AATCAAAGTATCAATATCGCATATCCTAATGAGAA-AACTATATTTGTGGTGCCTAATCCTGAAA
388 AACCAAAGCATCAATATCGTGTATCCTAATGAGAAGAAC-ATGTTTATGGTGCCTAATCCTGAAA
* *
56356 AGAATGGGGATTAGTTTGACTATTC
452 AGAATGGGGATTAGTATGGCTATTC
* * *
56381 ATGTTTATCTTATTTAAGACACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTTT
1 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* * * *
56446 TGCGACACCAAAGCATCATTGTCTTGCCTCCTATTGATGGGAATGTGATTTTGGTTCACAATCTT
66 TGCGACACCAAAGCATCAATGTCATGTCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTT
* * * ** * *
56511 GAAAAGAATGGGGATTATTACGAGAAACAATGCTCATCTTATTTAAGGGATAAACTTTTATTTTA
131 GAAAAGAATGGGGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA
* *
56576 TGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAAACATCAATATCATTTCTCCTAATG
196 TGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATG
* * * *
56641 AGAAGAATATGGTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTA
261 AGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG
* ** * * * *
56706 TCGCATTTGAGGCTTGAACATAGACTTCACAAAACTTGGTGGGAAAAATGCCTTTCTTGCAAAAC
326 TCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAAC
*** * * * *
56771 CAAAGCATCAATATCACATATCCTAATGAGAAG-ACTATATTTATGGTGGCTAATCTTGAAATGA
391 CAAAGCATCAATATCGTGTATCCTAATGAGAAGAAC-ATGTTTATGGTGCCTAATCCTGAAAAGA
* *
56835 ATGGGGATTAGTTTGACTATTC
455 ATGGGGATTAGTATGGCTATTC
* *
56857 ATGTTTATCTTACTTAAGAG--AAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCT
1 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCT
*
56920 TGCGACACCAAAG---C-ATGTCATGCCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTT
66 TGCGACACCAAAGCATCAATGTCATGTCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTT
* * * *
56981 GAAAAGAATGGGGATTGTTACGAGAAACGATGCTCGTCTTATTTAAGGGATGAACTTTGATTTTA
131 GAAAAGAATGGGGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA
* * *
57046 TGGAAAATAAGGGCAAAAAAAAAGATTTCCATGCAAAA-AAAATCATCAATATCATTTAACTTAA
196 TGGAAAAT-AGGGC-AAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCT-A
* * * *
57110 AT-AGGAGAATGTGCTTATAGTGCCTAATCATAAAATGAATAAAGATCATTCCTAGAATCCTTGT
258 ATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
* * * * *
57174 TTGTCTCATTTGAGGCACAAAATTAGACTTTAGAAAAAATTGGTGGGAAAAACGCATTTCTTGCG
323 TTGTCTCATTTGAGGCACGAACTTAGACTTTA-CAAAAATTGGTGGGAAAAATGCCTTTCTTGCG
* *
57239 AAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGAACATGTTTATGGTGCCCAATCCTGAAC
387 AAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGAACATGTTTATGGTGCCTAATCCTGAAA
* *
57304 AGAATGGGGAGTAGTATGGCTACTC
452 AGAATGGGGATTAGTATGGCTATTC
* ** * * *
57329 AAGTTTACCTTATTTAAGAGACAAACTTTGATTCCATAAAAAAACGTTTGAAAGAAAAGCTTTT-
1 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCAT-CAAAAACGGTGGAAAGAAAAGCTTTTC
* ** * * * * * *
57393 TTGTGACAATAAAGCATCAATGTCATGTATCCTATTAAAGGGAATGTG-TTTTCAGTACCGAATC
65 TTGCGACACCAAAGCATCAATGTCATGTCTCCTATTGATGGGAATGTGATTTT-GGTTCCCAATC
* * * * * * *
57457 TTGAAAAGAATGGAGATTGTTACGAGAATTGATGGTTGTCTTATTTAAGAGTTGAACTTTGATTT
129 TTGAAAAGAATGGGGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTT
* * * * *
57522 TATAGAATATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTCTCCTAA
194 TATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAA
* ** * * * ***
57587 TGA-G-GAATGTGCATATAGTGCCTAATCATTAAATCAATAAAGATCATTCCTAGAATTTTTGTT
259 TGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTT
* * * *
57650 TGTCTCATTTGAGGCACGAACATAGACTTTGCAAAAATTGGTGGGAAAAACGCATTTCTTGCGAA
324 TGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAA
* * * * * *
57715 ACCAAAGCTTGAATATCGTGCATCGTAATGAGAAGAACATGGTTATGGTGCCCAATCCTGAAAAG
389 ACCAAAGCATCAATATCGTGTATCCTAATGAGAAGAACATGTTTATGGTGCCTAATCCTGAAAAG
* * *
57780 AATGGGTAGTAGTATGGCTACTC
454 AATGGGGATTAGTATGGCTATTC
* *
57803 ATGTTTGCCTTATTTAA-AGACAAACTTTGATTCCATCAAAAACGGTGCAAAGAAAAGCTTTTCT
1 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* * * *
57867 TGGGACCCCAAAGCATTAATGTCTTGTCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTT
66 TGCGACACCAAAGCATCAATGTCATGTCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTT
* * * *
57932 GAAAGGAATGGGGACTATTATGAGAATCAATGCTCT-TCTTATTTAAGGGATGAACTTTTATTTT
131 GAAAAGAATGGGGACTATTACGAGAATCGATGCT-TGTCTTATTTAAGGGATGAACTTTGATTTT
* * *
57996 ATGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAATATCATCGATATCATTTATCCTAAT
195 ATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
* *
58061 GAGGAAAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGTTT
260 GAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
* * *
58126 GTCTCATTTGAGGCACGAACTTAAAATTTACAAAAATTGCTTGGG-AAAATGCCTTTCTTGCGAA
325 GTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTG-GTGGGAAAAATGCCTTTCTTGCGAA
* * * * * * *
58190 GCCAGAA-CATCAATATCGTGCATCCAAATTAGAGGAACATGTTTATGGCGCCTAATCCTAAAAA
389 ACCA-AAGCATCAATATCGTGTATCCTAATGAGAAGAACATGTTTATGGTGCCTAATCCTGAAAA
58254 GAATGGGGATTAGTATGAG-TATTC
453 GAATGGGGATTAGTATG-GCTATTC
* * * * * * * *
58278 ATG-TTGTCTTATTTAAGAGATAAGCTATGATTCTATCCAAAATGGTGGAAAGAAAACCTTTTCA
1 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* * * * ** * * *
58342 TGCGAAACCAAAGCATCAATGCCATGTATCCTATTTA-AAGAACAGTGTTTTTGGCTCCCAATCT
66 TGCGACACCAAAGCATCAATGTCATGTCTCCTATTGATGGGAA-TGTGATTTTGGTTCCCAATCT
* * * * * * ** * * *
58406 TGAGAAGAGTGGAGATTGTAATAAGAATCGATACTTGTCTTATTTAGGGGATGAACTTTGATATT
130 TGAAAAGAATGGGGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT
* * * * *
58471 AAGGAAAATCGGGCAAAGAAAAGATTTCCATGCAAAAGAATATCATCGATATCATTTATCCTACT
195 ATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
*
58536 GAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAAGGAAGATCATTACTAGAATCCATGTTT
260 GAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
* * *
58601 GTCTCATTTGAGGCACGAACTTAAAATTTACAAAAATTGCTTGGG-AAAATGCCTTTCTTGCGAA
325 GTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTG-GTGGGAAAAATGCCTTTCTTGCGAA
* * * * * * * *
58665 ACTAGAA-CATCAATATTGTGCATCCAAATTAGAGGAACATGTTTATGGCGCCTAATCCTAAAAA
389 ACCA-AAGCATCAATATCGTGTATCCTAATGAGAAGAACATGTTTATGGTGCCTAATCCTGAAAA
58729 GAATGGGGATTAGTATGAG-TATTC
453 GAATGGGGATTAGTATG-GCTATTC
* * * * * * * * *
58753 ATG-TTGTATTATTTAAGAGATAAGCTATGATTCTATCCAAAATGGTGGAAAGAAAACCTTTTCA
1 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* * ** * * *
58817 TGCGACACCAAAGCATCAATGTCATGTATCCTATTTA-AAGAACAGTGTTTTTGGCTCCCAATCT
66 TGCGACACCAAAGCATCAATGTCATGTCTCCTATTGATGGGAA-TGTGATTTTGGTTCCCAATCT
* * * * * ** * * *
58881 TGAGAAGAGTGGAGATTGTTATAAGAATCGATACTTGTCTTATTTAGGGGATGAACTTTGATATT
130 TGAAAAGAATGGGGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT
* * * * *
58946 AAGGAAAATCGGGCAAAGAAAAGATTTCCATGCAAAAGAATATCATCGATATCATTTATCCTACT
195 ATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
* *
59011 GAAGAGAATGTGCTTATAGTGCCTAATCACAAAATGAAGGAAGATCATTACTAGAATCCATGTTT
260 GAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
* * *
59076 GTCTCATTTGAGGCACGAACTTAAAATTTACAAAAATTGCTTGGG-AAAATGCCTTTCTTGCGAA
325 GTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTG-GTGGGAAAAATGCCTTTCTTGCGAA
* * * * * *
59140 ACCAGAA-CATCAATATCGTGCATCCAAATTAGAGGAACATGTTTATGGCGCCTAATCCTAAAAA
389 ACCA-AAGCATCAATATCGTGTATCCTAATGAGAAGAACATGTTTATGGTGCCTAATCCTGAAAA
59204 GAATGGGGATTAGTATGAG-TATTC
453 GAATGGGGATTAGTATG-GCTATTC
* * * * * * * * *
59228 ATG-TTGTATTATTTAAGAGATAAGCTATGATTCTATCCAAAATGGTGGAAAGAAAACCTTTTCA
1 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* * ** * * *
59292 TGCGACACCAAAGCATCAATGTCATGTATCCTATTTA-AAGAACAGTGTTTTTGGCTCCCAATCT
66 TGCGACACCAAAGCATCAATGTCATGTCTCCTATTGATGGGAA-TGTGATTTTGGTTCCCAATCT
* * * * ** * * *
59356 TGAGAAA-AGTGGAGATTGTTATAAGAATCGATACTTGTCTTATTTAGGGGATGAACTTTGATAT
130 TGA-AAAGAATGGGGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTT
* * * * * *
59420 TAAGGAAAATCGGGCAAAGAAAATATTTCCATGCAAAAGAATATCATCGATATCATTTATCCTAC
194 TATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAA
* *
59485 TGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAAGGAAGATCATTACTAGAATCCATTTT
259 TGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTT
* * *
59550 TGTCTCATTTGAGGCACGAACTTAAAATTTACAAAAATTGCTTGGG-AAAATGCCTTTCTTGCGA
324 TGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTG-GTGGGAAAAATGCCTTTCTTGCGA
* * * * * * *
59614 AACCAGAA-CATCAGTATTGTGCATCCAAATTAGAGGAACATGTTTATGGTGCCTAATCCTAAAA
388 AACCA-AAGCATCAATATCGTGTATCCTAATGAGAAGAACATGTTTATGGTGCCTAATCCTGAAA
59678 AGAATGGGGATTAGTATGAG-TATTC
452 AGAATGGGGATTAGTATG-GCTATTC
* * * * * * * * *
59703 ATG-TTGTATTATTTAAGAGATAAGCTATGATTCTATCCAAAATGGTGGAAAGAAAACCTTTTCA
1 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* * ** * * *
59767 TGCGACACCAAAGCATCAATGTCATGTATCCTATTTA-AAGAACAGTGTTTTTGGCTCCCAATCT
66 TGCGACACCAAAGCATCAATGTCATGTCTCCTATTGATGGGAA-TGTGATTTTGGTTCCCAATCT
* * * * * ** * * *
59831 TGAGAAGAGTGGAGATTGTTATAAGAATCGATACTTGTCTTATTTAGGGGATGAACTTTGATATT
130 TGAAAAGAATGGGGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT
* * * * *
59896 AAGGAAAATCA-GGCAAAGAAAATATTTCCATGCAAAAGAATATCATCGATATCATTTATCCTAC
195 ATGGAAAAT-AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAA
*
59960 TGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAAGGAAGATCATTACTAGAATCCATGTT
259 TGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTT
** * * *
60025 TGTCTCATTTGAGGCGTGAACATAGACTTTACAAAAATTTGTGGGAAAAATGCCTTTCTTGCAAA
324 TGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAA
* *** * * *
60090 ACCAAAACATCAATATTACGTATCCTAATAAGAAG-ACTATGTTTACGGTGCCTAATCCTAAAAA
389 ACCAAAGCATCAATATCGTGTATCCTAATGAGAAGAAC-ATGTTTATGGTGCCTAATCCTGAAAA
* *
60154 GGATGGGGATTAGTATAAG-TATTC
453 GAATGGGGATTAGTAT-GGCTATTC
* * * * * * * *
60178 ATGTTTGTCTTATTTAAGAGATAAGCTATGATTCTATCCAAAATGGTGGATAGAAAAGCTTTTCA
1 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* * * * * * * * *
60243 TGCGACACCAAAGCTTCAATGCCGTGTATCCTAATAAAGGAAATGTG-TTTTAGGTTCCCAATCC
66 TGCGACACCAAAGCATCAATGTCATGTCTCCTATTGATGGGAATGTGATTTT-GGTTCCCAATCT
* * *
60307 TAAAAACAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT
130 TGAAAAGAATGGGGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT
* * *
60372 ACGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAAT
195 ATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
*
60437 GAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAAGGAAGATCATTACTAGAATCCATGTTT
260 GAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
** * * *
60502 GTCTCATTTGAGGCGTGAACATAGACTTTACAAAAATTTGTGGGAAAAATGCCTTTCTTGCAAAA
325 GTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAA
* *** * * *
60567 CCAAAACATCAATATTACGTATCCTAATAAGAAG-ACTATGTTTACGGTGCCTAATCCTAAAAAG
390 CCAAAGCATCAATATCGTGTATCCTAATGAGAAGAAC-ATGTTTATGGTGCCTAATCCTGAAAAG
* *
60631 GATGGGGATTAGTATAAG-TATTC
454 AATGGGGATTAGTAT-GGCTATTC
* * * * * * * *
60654 ATGTTTGTCTTATTTAAGAGATAAGCTATGATTCTATCCAAAATGGTGGATAGAAAAGCTTTTCA
1 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* * * * * * * * *
60719 TGCGACACCAAAGCTTCAATGCCGTGTATCCTAATAAAGGAAATGTG-TTTTAGGTTCCCAATCC
66 TGCGACACCAAAGCATCAATGTCATGTCTCCTATTGATGGGAATGTGATTTT-GGTTCCCAATCT
* * *
60783 TAAAAACAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT
130 TGAAAAGAATGGGGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT
* * *
60848 ACGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAAT
195 ATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
* * * *
60913 GAGGAGAATGTGCTTATAGTGCCTAATCATAAAATGAATAAAGATCATTCCTAGAATCCTTGTTT
260 GAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
* * * * * *
60978 GTCTCATTTGAGGCATGAACATAGACTTTGCAAAAATTGGTGGGAAAAACGCATTTCTTGCAAAA
325 GTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAA
* ** *
61043 CCAAAGCTTCAATATCGTACATCCTAATGAGAAGAACATGTTTATGGTGCCCAATCCTGAAAAGA
390 CCAAAGCATCAATATCGTGTATCCTAATGAGAAGAACATGTTTATGGTGCCTAATCCTGAAAAGA
* * *
61108 TTGGGGAGTAGTATGGCTACTC
455 ATGGGGATTAGTATGGCTATTC
* * *
61130 ATGTTTGCCTTATTTAAGAGACAAACTTCGATTCCATCAAAAACGGTGCAAAGAAAAGCTTTTCT
1 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* *
61195 TGCGACCCCAAAGCATCAATGTCTTGTCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTT
66 TGCGACACCAAAGCATCAATGTCATGTCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTT
* * * * *
61260 GAAAGGAATGGGGACTATTATGAGAATTGATGCTTGTCTTATTTAAGGGGTGAACTTTTATTTTA
131 GAAAAGAATGGGGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA
*
61325 TGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATG
196 TGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATG
* * *
61390 AGGAAAATGTGCTTATAGTGCCTAATCACAAAATGAATGTAGATCATTACTAGAATCCAAGTTTG
261 AGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG
* *
61455 TCTCATTTGAGGCACGAACTTAAACTTTACAAAAATTGGT-TGAGAAAATGCCTTTCTTGCGAAA
326 TCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGA-AAAATGCCTTTCTTGCGAAA
* *
61519 CCAGAA-CATCAATATCGTGTATCCTAATTAGAAGAACATGTTTATGGTGCCTAATCCTAAAAAG
390 CCA-AAGCATCAATATCGTGTATCCTAATGAGAAGAACATGTTTATGGTGCCTAATCCTGAAAAG
61583 AATGGGGATTAGTATGAG-TATTC
454 AATGGGGATTAGTATG-GCTATTC
*
61606 ATGTTTGTCTTATTTCAGAGA
1 ATGTTTGTCTTATTTAAGAGA
61627 TAAGCTCAAT
Statistics
Matches: 8519, Mismatches: 906, Indels: 208
0.88 0.09 0.02
Matches are distributed among these distances:
469 31 0.00
470 288 0.03
471 260 0.03
472 199 0.02
473 181 0.02
474 245 0.03
475 2229 0.26
476 3506 0.41
477 1048 0.12
478 527 0.06
479 5 0.00
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.31
Consensus pattern (476 bp):
ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCT
TGCGACACCAAAGCATCAATGTCATGTCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTT
GAAAAGAATGGGGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA
TGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATG
AGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG
TCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAAC
CAAAGCATCAATATCGTGTATCCTAATGAGAAGAACATGTTTATGGTGCCTAATCCTGAAAAGAA
TGGGGATTAGTATGGCTATTC
Found at i:60393 original size:159 final size:157
Alignment explanation
Indices: 57938--61400 Score: 620
Period size: 159 Copynumber: 21.8 Consensus size: 157
57928 TCTTGAAAGG
* * * * *
57938 AATGGGGACTATTATGAGAATCAATGCTCT-TCTTATTTAAGGGATGAACTTTTATTTTATGAAA
1 AATGGAGACTATTACGAGAATCGATGCT-TGTCTTATTTAAGGGATGAACTTTGATTTTA-CAAA
* * * * * * * *
58002 AATAGGGCAAAGAAAAGATTTCCATGCAAAA-GAATATCATCGATATCATTTATCCTAATGAGGA
64 AATAGGGCAAAGAAAAGCTTTTCATGCAAAACCAA-AGCATCAATACCATGTATCCTAATAAGG-
* * **
58066 AAATGTGCTTATA-GTGCCTAATCAC-AAAATG
127 AAATGTG-TTTTAGGTGCCCAATC-CTAAAAAC
* * * * * * * * * ** *
58097 AATGAAGA-TCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACTTAAAATTTACAAAA
1 AATGGAGACT-ATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTACAAAA
* *** * * * * * * * *
58161 AT--TGCTTGGGAAAATGCCTTTCTTGCGAAGCCAGAA-CATCAATATCGTGCATCCAAATTAGA
65 ATAGGGC-AAAGAAAA-GCTTTTCATGCAAAACCA-AAGCATCAATACCATGTATCCTAA-TA-A
* * * *
58223 GGAACATGT-TTAT-GGCGCCTAATCCTAAAAAG
125 GGAA-ATGTGTTTTAGGTGCCCAATCCTAAAAAC
* * * * * * * * *
58255 AATGGGGATTAGTATGAGTATTC-ATG-TTGTCTTATTTAAGAGAT-AAGCTATGATTCTATCCA
1 AATGGAGACTATTACGAG-AATCGATGCTTGTCTTATTTAAGGGATGAA-CTTTGATTTTA-CAA
* * * * * *
58317 AAAT-GGTGGAAAGAAAACCTTTTCATGCGAAACCAAAGCATCAATGCCATGTATCCTATTTAAA
63 AAATAGG-GCAAAGAAAAGCTTTTCATGCAAAACCAAAGCATCAATACCATGTATCCTA-ATAAG
* * * * *
58381 GAACA-GTGTTTTTGGCT-CCCAATCTTGAGAAG
126 GAA-ATGTGTTTTAGG-TGCCCAATCCTAAAAAC
* * * * ** * * *
58413 AGTGGAGATTGTAATAAGAATCGATACTTGTCTTATTTAGGGGATGAACTTTGATATTA-AGGAA
1 AATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTACA--AA
* * * * * * * * * *
58477 AATCGGGCAAAGAAAAGATTTCCATGCAAAA-GAATATCATCGATATCATTTATCCTACTGAGGA
64 AATAGGGCAAAGAAAAGCTTTTCATGCAAAACCAA-AGCATCAATACCATGTATCCTAATAAGGA
* * **
58541 GAATGTGCTTATA-GTGCCTAATCAC-AAAATG
128 -AATGTG-TTTTAGGTGCCCAATC-CTAAAAAC
* * * * * * * ** *
58572 AA-GGAAGA-TCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAAAATTTACAAA
1 AATGG-AGACT-ATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTACAAA
* *** * * * * *** * *
58635 AAT--TGCTTGGGAAAATGCCTTTCTTGCGAAACTAGAA-CATCAATATTGTGCATCCAAATTAG
64 AATAGGGC-AAAGAAAA-GCTTTTCATGCAAAACCA-AAGCATCAATACCATGTATCCTAA-TA-
* * * *
58697 AGGAACATGT-TTAT-GGCGCCTAATCCTAAAAAG
124 AGGAA-ATGTGTTTTAGGTGCCCAATCCTAAAAAC
* * * * * * * * * *
58730 AATGGGGATTAGTATGAGTATTC-ATG-TTGTATTATTTAAGAGAT-AAGCTATGATTCTATCCA
1 AATGGAGACTATTACGAG-AATCGATGCTTGTCTTATTTAAGGGATGAA-CTTTGATTTTA-CAA
* * * * ** * *
58792 AAAT-GGTGGAAAGAAAACCTTTTCATGCGACACCAAAGCATCAATGTCATGTATCCTATTTAAA
63 AAATAGG-GCAAAGAAAAGCTTTTCATGCAAAACCAAAGCATCAATACCATGTATCCTA-ATAAG
* * * * *
58856 GAACA-GTGTTTTTGGCT-CCCAATCTTGAGAAG
126 GAA-ATGTGTTTTAGG-TGCCCAATCCTAAAAAC
* * * ** * * *
58888 AGTGGAGATTGTTATAAGAATCGATACTTGTCTTATTTAGGGGATGAACTTTGATATTA-AGGAA
1 AATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTACA--AA
* * * * * * * * *
58952 AATCGGGCAAAGAAAAGATTTCCATGCAAAA-GAATATCATCGATATCATTTATCCTACTGAA-G
64 AATAGGGCAAAGAAAAGCTTTTCATGCAAAACCAA-AGCATCAATACCATGTATCCTAAT-AAGG
* * **
59015 AGAATGTGCTTATA-GTGCCTAATCAC-AAAATG
127 A-AATGTG-TTTTAGGTGCCCAATC-CTAAAAAC
* * * * * * * ** *
59047 AA-GGAAGA-TCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAAAATTTACAAA
1 AATGG-AGACT-ATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTACAAA
* *** * * * * * * *
59110 AAT--TGCTTGGGAAAATGCCTTTCTTGCGAAACCAGAA-CATCAATATCGTGCATCCAAATTAG
64 AATAGGGC-AAAGAAAA-GCTTTTCATGCAAAACCA-AAGCATCAATACCATGTATCCTAA-TA-
* * * *
59172 AGGAACATGT-TTAT-GGCGCCTAATCCTAAAAAG
124 AGGAA-ATGTGTTTTAGGTGCCCAATCCTAAAAAC
* * * * * * * * * *
59205 AATGGGGATTAGTATGAGTATTC-ATG-TTGTATTATTTAAGAGAT-AAGCTATGATTCTATCCA
1 AATGGAGACTATTACGAG-AATCGATGCTTGTCTTATTTAAGGGATGAA-CTTTGATTTTA-CAA
* * * * ** * *
59267 AAAT-GGTGGAAAGAAAACCTTTTCATGCGACACCAAAGCATCAATGTCATGTATCCTATTTAAA
63 AAATAGG-GCAAAGAAAAGCTTTTCATGCAAAACCAAAGCATCAATACCATGTATCCTA-ATAAG
* * *
59331 GAACA-GTGTTTTTGGCT-CCCAATCTTGAGAAA-
126 GAA-ATGTGTTTTAGG-TGCCCAATCCT-AAAAAC
* * * ** * * *
59363 AGTGGAGATTGTTATAAGAATCGATACTTGTCTTATTTAGGGGATGAACTTTGATATTA-AGGAA
1 AATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTACA--AA
* ** * * * * * * * *
59427 AATCGGGCAAAGAAAATATTTCCATGCAAAA-GAATATCATCGATATCATTTATCCTACTGAGGA
64 AATAGGGCAAAGAAAAGCTTTTCATGCAAAACCAA-AGCATCAATACCATGTATCCTAATAAGGA
* * **
59491 GAATGTGCTTATA-GTGCCTAATCAC-AAAATG
128 -AATGTG-TTTTAGGTGCCCAATC-CTAAAAAC
* * ** * * * * ** *
59522 AA-GGAAGA-TCATTACTAGAATCCATTTTTGTCTCATTTGAGGCACGAACTTAAAATTTACAAA
1 AATGG-AGACT-ATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTACAAA
* *** * * * * *** * *
59585 AAT--TGCTTGGGAAAATGCCTTTCTTGCGAAACCAGAA-CATCAGTATTGTGCATCCAAATTAG
64 AATAGGGC-AAAGAAAA-GCTTTTCATGCAAAACCA-AAGCATCAATACCATGTATCCTAA-TA-
* * *
59647 AGGAACATGT-TTAT-GGTGCCTAATCCTAAAAAG
124 AGGAA-ATGTGTTTTAGGTGCCCAATCCTAAAAAC
* * * * * * * * * *
59680 AATGGGGATTAGTATGAGTATTC-ATG-TTGTATTATTTAAGAGAT-AAGCTATGATTCTATCCA
1 AATGGAGACTATTACGAG-AATCGATGCTTGTCTTATTTAAGGGATGAA-CTTTGATTTTA-CAA
* * * * ** * *
59742 AAAT-GGTGGAAAGAAAACCTTTTCATGCGACACCAAAGCATCAATGTCATGTATCCTATTTAAA
63 AAATAGG-GCAAAGAAAAGCTTTTCATGCAAAACCAAAGCATCAATACCATGTATCCTA-ATAAG
* * * * *
59806 GAACA-GTGTTTTTGGCT-CCCAATCTTGAGAAG
126 GAA-ATGTGTTTTAGG-TGCCCAATCCTAAAAAC
* * * ** * * *
59838 AGTGGAGATTGTTATAAGAATCGATACTTGTCTTATTTAGGGGATGAACTTTGATATTA-AGGAA
1 AATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTACA--AA
** * * * * * * * *
59902 AATCA-GGCAAAGAAAATATTTCCATGCAAAA-GAATATCATCGATATCATTTATCCTACTGAGG
64 AAT-AGGGCAAAGAAAAGCTTTTCATGCAAAACCAA-AGCATCAATACCATGTATCCTAATAAGG
* * **
59965 AGAATGTGCTTATA-GTGCCTAATCAC-AAAATG
127 A-AATGTG-TTTTAGGTGCCCAATC-CTAAAAAC
* * * * * * * *
59997 AA-GGAAGA-TCATTACTAGAATCCATGTTTGTCTCATTTGAGGCG-TGAACATAGACTTTACAA
1 AATGG-AGACT-ATTACGAGAATCGATGCTTGTCTTATTTAAGG-GATGAACTTTGATTTTACAA
* * * * * * ** *
60059 AAATTTGTGG-GAA-AAATGCCTTTCTTGCAAAACCAAAACATCAATATTACGTATCCTAATAA-
63 AAA-TAG-GGCAAAGAAAAGCTTTTCATGCAAAACCAAAGCATCAATACCATGTATCCTAATAAG
* * *
60121 GAAGACTATG-TTTACGGTGCCTAATCCTAAAAAG
126 GAA-A-TGTGTTTTA-GGTGCCCAATCCTAAAAAC
* * * * ** * * * * * *
60155 GATGGGGATTAGTATAAGTATTC-ATGTTTGTCTTATTTAAGAGAT-AAGCTATGATTCTATCCA
1 AATGGAGACTATTACGAG-AATCGATGCTTGTCTTATTTAAGGGATGAA-CTTTGATTTTA-CAA
* * * * * * *
60218 AAAT-GGTGGATAGAAAAGCTTTTCATGCGACACCAAAGCTTCAATGCCGTGTATCCTAATAAAG
63 AAATAGG-GCAAAGAAAAGCTTTTCATGCAAAACCAAAGCATCAATACCATGTATCCTAAT-AAG
*
60282 GAAATGTGTTTTAGGTTCCCAATCCTAAAAAC
126 GAAATGTGTTTTAGGTGCCCAATCCTAAAAAC
60314 AATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTACGAAAA
1 AATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAC-AAAA
* * ** * * * * *
60379 ATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAGA
65 ATAGGGCAAAGAAAAGCTTTTCATGCAAAACCAAAGCATCAATACCATGTATCCTAATAAGGA-A
* * **
60444 ATGTGCTTATA-GTGCCTAATCAC-AAAATG
129 ATGTG-TTTTAGGTGCCCAATC-CTAAAAAC
* * * * * * * *
60473 AA-GGAAGA-TCATTACTAGAATCCATGTTTGTCTCATTTGAGGCG-TGAACATAGACTTTACAA
1 AATGG-AGACT-ATTACGAGAATCGATGCTTGTCTTATTTAAGG-GATGAACTTTGATTTTACAA
* * * * * * ** *
60535 AAATTTGTGG-GAA-AAATGCCTTTCTTGCAAAACCAAAACATCAATATTACGTATCCTAATAA-
63 AAA-TAG-GGCAAAGAAAAGCTTTTCATGCAAAACCAAAGCATCAATACCATGTATCCTAATAAG
* * *
60597 GAAGACTATG-TTTACGGTGCCTAATCCTAAAAAG
126 GAA-A-TGTGTTTTA-GGTGCCCAATCCTAAAAAC
* * * * ** * * * * * *
60631 GATGGGGATTAGTATAAGTATTC-ATGTTTGTCTTATTTAAGAGAT-AAGCTATGATTCTATCCA
1 AATGGAGACTATTACGAG-AATCGATGCTTGTCTTATTTAAGGGATGAA-CTTTGATTTTA-CAA
* * * * * * *
60694 AAAT-GGTGGATAGAAAAGCTTTTCATGCGACACCAAAGCTTCAATGCCGTGTATCCTAATAAAG
63 AAATAGG-GCAAAGAAAAGCTTTTCATGCAAAACCAAAGCATCAATACCATGTATCCTAAT-AAG
*
60758 GAAATGTGTTTTAGGTTCCCAATCCTAAAAAC
126 GAAATGTGTTTTAGGTGCCCAATCCTAAAAAC
60790 AATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTACGAAAA
1 AATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAC-AAAA
* * ** * * * * *
60855 ATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAGA
65 ATAGGGCAAAGAAAAGCTTTTCATGCAAAACCAAAGCATCAATACCATGTATCCTAATAAGGA-A
* * * **
60920 ATGTGCTTATA-GTGCCTAATCATAAAATG
129 ATGTG-TTTTAGGTGCCCAATCCTAAAAAC
** * * ** * * * * * * * *
60949 AATAAAGA-TCATTCCTAGAATCCTTGTTTGTCTCATTTGAGGCATGAACATAGACTTTGCAAAA
1 AATGGAGACT-ATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTACAAAA
* ** * * * * * * ** *
61013 ATTGGTGGGAA-AAACGCATTTCTTGCAAAACCAAAGCTTCAATATCGTACATCCTAATGAGAAG
65 ATAGG-GCAAAGAAAAGCTTTTCATGCAAAACCAAAGCATCAATACCATGTATCCTAAT-A-AGG
* * *
61077 AACATGT-TTAT-GGTGCCCAATCCTGAAAAG
127 AA-ATGTGTTTTAGGTGCCCAATCCTAAAAAC
* * * * * * * * * ** * **
61107 ATTGGGGAGTAGTATG-GCTACTC-ATGTTTGCCTTATTTAAGAGACAAACTTCGATTCCATCAA
1 AATGGAGACTATTACGAG--AATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA-CAA
* * * ** ** * * * *
61170 AAA-CGGTGCAAAGAAAAGCTTTTCTTGCGACCCCAAAGCATCAATGTCTTGTCTCCTATTGATG
63 AAATAGG-GCAAAGAAAAGCTTTTCATGCAAAACCAAAGCATCAATACCATGTATCCTAAT-AAG
* * * * **
61234 GGAATGTGATTTT-GGTTCCCAATCTTGAAAGG
126 GAAATGTG-TTTTAGGTGCCCAATCCTAAAAAC
* * * * * *
61266 AATGGGGACTATTATGAGAATTGATGCTTGTCTTATTTAAGGGGTGAACTTTTATTTTATGAAAA
1 AATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA-CAAAA
* * ** * * * *
61331 ATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAAA
65 ATAGGGCAAAGAAAAGCTTTTCATGCAAAACCAAAGCATCAATACCATGTATCCTAATAAGG-AA
61396 ATGTG
129 ATGTG
61401 CTTATAGTGC
Statistics
Matches: 2337, Mismatches: 743, Indels: 448
0.66 0.21 0.13
Matches are distributed among these distances:
156 34 0.01
157 176 0.08
158 840 0.36
159 1166 0.50
160 115 0.05
161 6 0.00
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (157 bp):
AATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTACAAAAA
TAGGGCAAAGAAAAGCTTTTCATGCAAAACCAAAGCATCAATACCATGTATCCTAATAAGGAAAT
GTGTTTTAGGTGCCCAATCCTAAAAAC
Found at i:61994 original size:422 final size:421
Alignment explanation
Indices: 61235--62048 Score: 1197
Period size: 422 Copynumber: 1.9 Consensus size: 421
61225 CTATTGATGG
* * ** ** *
61235 GAATGTGATTTTGGTTCCCAATCTTGAAAGGAATGGGGACTATTATGAGAATTGATGCTTGTCTT
1 GAATGTGATTTTGGCTCCCAATCTTGAAAGGAATGGAGACTATTACAAGAATCAATACTTGTCTT
* * * *
61300 ATTTAAGGGGTGAACTTTTATTTTATGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
66 ATTTAAGGGGTGAACTTTGATATTAAGAAAAATAGGGCAAAGAAAAGATTTCCACGCAAAAGAAA
* *
61365 ATCATCAATATCATTTATCCTAATGAGGAAAATGTGCTTATAGTGCCTAATCACAAAATGAATGT
131 ATCATCAATATCATTTATCCTAATGAGGAAAATGTGCTTATAGTGCCTAATCACAAAATGAAGGA
*
61430 AGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACTTAAACTTTACAAAAATTGGT
196 AGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACATAAACTTTACAAAAATTGGT
* * * * *
61495 TGAGAAAATGCCTTTCTTGCGAAACCAGAACATCAATATCGTGTATCCTAATTAGAAGAACATGT
261 GGAGAAAATGCCTTTCTTGCAAAACCAAAACATCAATATCGCGTATCCTAATAAGAAGAACATGT
* * *
61560 TTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTCAGA
326 TTATGGTGCCTAATCCGAAAAAGAATGGGGATTAGTATGAATATTCATGTTTGTCTTATTTAAGA
61625 GATAAGCTCAATGTCATGTAACCTATTAAAA
391 GATAAGCTCAATGTCATGTAACCTATTAAAA
* * *
61656 GAATAGTGTTTTTGGCTCCCAATCTTGAGAA-GAATGGAGATTGTTACAAGAATCAATACTTGTC
1 GAAT-GTGATTTTGGCTCCCAATCTTGA-AAGGAATGGAGACTATTACAAGAATCAATACTTGTC
* *
61720 TT-TTTTAGGGGATGAACTTTGATATTAAGGAAAATAGGGCAAAGAAAAGATTTCCACGCAAAAG
64 TTATTTAAGGGG-TGAACTTTGATATTAAGAAAAATAGGGCAAAGAAAAGATTTCCACGCAAAAG
* * * *
61784 AATATCATCAATATCTTTTATCCTATTGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAA
128 AAAATCATCAATATCATTTATCCTAATGAGGAAAATGTGCTTATAGTGCCTAATCACAAAATGAA
* * * *
61849 GGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGTGGCATGAACATAGACTTTACAAAAATT
193 GGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACATAAACTTTACAAAAATT
*
61914 AGCG-GGA-AAAATGCCTTTCTTGCAAAACCAAAACATCAATATTGCGTATCCTAATAAGAAG-A
258 -G-GTGGAGAAAATGCCTTTCTTGCAAAACCAAAACATCAATATCGCGTATCCTAATAAGAAGAA
* *
61976 CTATGTTTATGGTGCCTAATCCGAAAAAGAATGGGGATTAGTTTGAATATTCGTGTTTGTCTTAT
321 C-ATGTTTATGGTGCCTAATCCGAAAAAGAATGGGGATTAGTATGAATATTCATGTTTGTCTTAT
62041 TTAAGAGA
385 TTAAGAGA
62049 CAAACTTTGA
Statistics
Matches: 349, Mismatches: 38, Indels: 11
0.88 0.10 0.03
Matches are distributed among these distances:
421 14 0.04
422 329 0.94
423 5 0.01
424 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (421 bp):
GAATGTGATTTTGGCTCCCAATCTTGAAAGGAATGGAGACTATTACAAGAATCAATACTTGTCTT
ATTTAAGGGGTGAACTTTGATATTAAGAAAAATAGGGCAAAGAAAAGATTTCCACGCAAAAGAAA
ATCATCAATATCATTTATCCTAATGAGGAAAATGTGCTTATAGTGCCTAATCACAAAATGAAGGA
AGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCACGAACATAAACTTTACAAAAATTGGT
GGAGAAAATGCCTTTCTTGCAAAACCAAAACATCAATATCGCGTATCCTAATAAGAAGAACATGT
TTATGGTGCCTAATCCGAAAAAGAATGGGGATTAGTATGAATATTCATGTTTGTCTTATTTAAGA
GATAAGCTCAATGTCATGTAACCTATTAAAA
Found at i:62880 original size:476 final size:476
Alignment explanation
Indices: 61628--77501 Score: 19482
Period size: 476 Copynumber: 33.4 Consensus size: 476
61618 TTTCAGAGAT
** ** * * *
61628 AAGC-TCAATGTCATGTAACCTATTAA-AAGAATAGTGTTTTTGGCTCCCAATCTTGAGAAGAAT
1 AAGCATCAATGTCATGTCTCCTATTAATGGGAAT-GTGATTTTGGTTCCCAATCTTGAAAAGAAT
* * * * * * * * * * *
61691 GGAGATTGTTACAAGAATCAATACTTGTCTTTTTTAGGGGATGAACTTTGATATTAAGGAAAATA
65 GGAGACTATTACGAGAATCGATGCTCGTCTTATTTAAGGGATGAACTTTTATTTTATGGAAAATA
* * * *
61756 GGGCAAAGAAAAGATTTCCACGCAAAAGAATATCATCAATATCTTTTATCCTATTGAGGAGAATG
130 GGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATG
*
61821 TGCTTATAGTGCCTAATCACAAAATGAAGGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG
195 TGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG
* * * * * *
61886 TGGCATGAACATAGACTTTACAAAAATTAGCGGGAAAAATGCCTTTCTTGCAAAACCAAAACATC
260 AGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATC
* * *
61951 AATATTGCGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCC-GAAAAAGAATGGGGATT
325 AATATCGCGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCTG-AAAAGAATGGGGATT
* * * *
62015 AGTTTGAATATTCGTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAACAGTGGAA
389 AGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATC-AAAAACGGTGGAA
* * *
62080 AGAATAGCCTTTCTTGCAACACCA
453 AGAAAAGCTTTTCTTGCGACACCA
* * * * * * * *
62104 AAGCTTCAACGTCATGTATCCTAATGAA-GGAAATGTG-TTTTAGGTTCCCAATCCTAAAAACAA
1 AAGCATCAATGTCATGTCTCCT-ATTAATGGGAATGTGATTTT-GGTTCCCAATCTTGAAAAGAA
* * * *
62167 TGCAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTACTAGAAAA
64 TGGAGACTATTACGAGAATCGATGCTCGTCTTATTTAAGGGATGAACTTTTATTTTA-TGGAAAA
* *
62232 TAGGGCAAAGAAAAGATTTCCATTCAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAA
128 TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
* * * * *
62297 TGTGCTTATAGTGCCTAATCCCAAAATGAAGGAAGATTATTACTAGAAACCATATTTGTCTCATT
193 TGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATT
* * * * *
62362 TGACGCATGAACATAGACTTTACAAAAATTAGTGGGAAAAATGCCTTTCTTGTGAAACCAAAACA
258 TGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCA
* * * * *
62427 TCAATATCGCGTATCCTAATGAGAAAACTATATTTGTGGTGCCTAATTCTGAAAAAAATAGGGAT
323 TCAATATCGCGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGAT
* * *
62492 TAGTTTGACTATTCATGTTTATCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAC
388 TAGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAA
* * **
62557 AGTAATGCTTTTCTTGCGACAATA
453 AGAAAAGCTTTTCTTGCGACACCA
* *
62581 AAGCATCAATGTTATGTCTCCTATTAACGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAATG
1 AAGCATCAATGTCATGTCTCCTATTAATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAATG
* * * *
62646 GGGACTATTACGAGAATCGATACTCATCTTATTTAAGGGATGAACTTTTATTTTATGGCAAATAG
66 GAGACTATTACGAGAATCGATGCTCGTCTTATTTAAGGGATGAACTTTTATTTTATGGAAAATAG
* * *
62711 GTCAAAGAAAAGTTTTCCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATGT
131 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
* * * * *
62776 GCCTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTATCGCATTTGT
196 GCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA
* *
62841 GGCGTGAACTTAGACTTTACAAAAATTGGTGGTAAAAATGCCTTTCTTGCGAAACCAAAGCATCA
261 GGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCA
* * *
62906 ATATCGCGTATCCTAATGAGAAGACTGTATTTATGGTGCCTAATCC-GAAAAAGAATGGGGATTA
326 ATATCGCGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCTG-AAAAGAATGGGGATTA
* *
62970 GTTTGACTATTCATGTTTATCTTATTTAAGAGA-TAACTTTGATTCCATCAAAAACGGTGGAAAG
390 GTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAG
63034 AAAAGCTTTTCTTGCGACACCA
455 AAAAGCTTTTCTTGCGACACCA
* * * *
63056 AAGCATCAATGTCATG-CCCCTTATTGATGGGAATATGATTTTGGTTCCCAATCTTGAAAAGAAA
1 AAGCATCAATGTCATGTCTCC-TATTAATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAAT
* * * * *
63120 GGGGACTAATACGAGAAACAATGTTCGTCTTATTTAAGGGATGAACTTTTATTTTATGGAAAATA
65 GGAGACTATTACGAGAATCGATGCTCGTCTTATTTAAGGGATGAACTTTTATTTTATGGAAAATA
* * * * * *
63185 GGGCAAATAAAAGATTTTCATACAAAAGAAAATCATCAATATCATTTCTCCTAGTAAGGAGAATG
130 GGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATG
* * *
63250 TGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCGCATTTA
195 TGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG
* *
63315 AGGCATGAACTTAGACTTTTCAAAAATTGGTGGGAAAAATGCCCTTCTTG-GAAAACCAAAGCAT
260 AGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCG-AAACCAAAGCAT
* * * * * *
63379 CAATATCGGGTATCCTAATGAGAAGACTATATTTGTGGTGCCTAATCCTGAAAAGGATGGCGATT
324 CAATATCGCGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATT
* * * * * *
63444 AGTTGGACTATTCATATTTGTCTTCTTTAAGAGACAAACATTGATTCCGTCAAAAAAGGTGGAAA
389 AGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAA
63509 GAAAAGCTTTTCTTGCGACACCA
454 GAAAAGCTTTTCTTGCGACACCA
* * *
63532 AAGCATCAATGTTATGTCTTCTATTAACGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAATA
1 AAGCATCAATGTCATGTCTCCTATTAATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAAT-
* * *
63597 GG-GACTATTATGAGAATCGATGCTCGTCTTATTTATGGGATGAACTTTTATTTTATGGCAAATA
65 GGAGACTATTACGAGAATCGATGCTCGTCTTATTTAAGGGATGAACTTTTATTTTATGGAAAATA
* *
63661 GGGCAAAGAAAAGTTTTCCATGCAAAAGAAAATCATGAATATCATTTATCCTAATGAGGAGAATG
130 GGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATG
* * * *
63726 TGCCTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTATCGCATTTG
195 TGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG
* * * *
63791 TGGCGTGAACTTAGACTTTACAAAAATTGGTGGTAAAAGTGCCTTTCTTGCGAAACCAAAGCATC
260 AGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATC
* * ** *
63856 AATATCGCGTATCCTAATGAGAAGACTATATTTATGGTGCCTAATCCAAAAAAGAATGGTGATTA
325 AATATCGCGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTA
* *
63921 GTTTGACTATTCATGTTTATCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAAG
390 GTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAG
* *
63986 GAAAGCTTCTCTTGCGACACCA
455 AAAAGCTTTTCTTGCGACACCA
* * * * *
64008 AAGCATCAATGGCATGCCTCTTATTGATGGGAATGTGATTTTGGTTCCCAATCTTGGAAAGAATG
1 AAGCATCAATGTCATGTCTCCTATTAATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAATG
* * * **
64073 GGGACTATTATGAGAAACGATGCTCGTCTTATTTAAGGGAT-AGACTTTTATTTTACAGAAAAGT
66 GAGACTATTACGAGAATCGATGCTCGTCTTATTTAAGGGATGA-ACTTTTATTTTATGGAAAA-T
* *
64137 AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAATATCATTTCTCCTAATGAGGAGAAT
129 AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
* * * * **
64202 GTACTTAGAGTGCCTAATCACAAAATGAATGAAGATTATTACTAGAATCCATGTTTATCGAATTT
194 GTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT
* *
64267 GAGGCATGAACTTAGACTTTACGAAAATTGGTGGGAAAAATGCCTTTCTTGCAAAACCAAAGCAT
259 GAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCAT
* * * *
64332 CAATATCGTGTATCTTAATGAGAAGACTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATT
324 CAATATCGCGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATT
* * * *
64397 AGTTTGATTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCCGTCAAAAAAGGTGGAAA
389 AGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAA
64462 GAAAAGCTTTTCTTGCGACACCA
454 GAAAAGCTTTTCTTGCGACACCA
* *
64485 AAGCATCAATGTTATGTCTCCTATTAATGGGAATGTGATTTTGGTTCCCAATCTTAAAAAGAATG
1 AAGCATCAATGTCATGTCTCCTATTAATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAATG
*
64550 GGGACTATTAC-ATGAATCGATGCTCGTCTTATTTAAGGGATGAA-TTTTGATTTTATGGAAAAT
66 GAGACTATTACGA-GAATCGATGCTCGTCTTATTTAAGGGATGAACTTTT-ATTTTATGGAAAAT
* *
64613 AAGGGCAAAGAAAAGATTTTCATACCAAAA-AAAATCATCAATATCATTTATCCTAAT---GAGA
129 -AGGGCAAAGAAAAGATTTCCAT-GCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA
* * * * * * * *
64674 ATGCGCTTATAGTGCCTAATTATAAAATGAATAAAGGTCATTCCTAGAATCCTTGTTTGTCTTAT
192 ATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCAT
* * * * *
64739 TTGAGGCACGGACTTAGGCTTTACAAAAATTGGTGGGAAAAACGCATTTCTTGCGAAACCAAAGC
257 TTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGC
* * * * * *
64804 TTCAATATTGTGTATCCTAATGAGAAGAAC-ATGTTTACT-GTTCCCAATCCTAAAAAGAATGGG
322 ATCAATATCGCGTATCCTAATGAGAA-AACTATGTTTA-TGGTGCCTAATCCTGAAAAGAATGGG
* * *
64867 GATTAGTTTGACTATTC-TGTTTATCTTATTTAAGACACAAACTTTGATTCCATTAAAAACGGTG
385 GATTAGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTG
64931 GAAAGAAAAGCTTTTCTTGCGACACCA
450 GAAAGAAAAGCTTTTCTTGCGACACCA
* * * *
64958 AAGCATCAATGTCATGCCTCCTATTGATGGGAATGTGATATTGGTTCCCAAGCTTGAAAAGAATA
1 AAGCATCAATGTCATGTCTCCTATTAATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAAT-
* * * * *
65023 GG-GACTCTTATGAGAAACGATACTCG-CTTATTTAAGGGATGAACTTTTTTTTTATGGAAAATA
65 GGAGACTATTACGAGAATCGATGCTCGTCTTATTTAAGGGATGAACTTTTATTTTATGGAAAATA
* * * *
65086 GAG-AGAATAAAAGATTTCCATACAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAGAAT
130 GGGCA-AAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
* * * ** *
65150 GTGCTTATAGTGCCTAATCACAAAATAAATGAAGATCATTGCTAGAATCTATGTTCATCACATTT
194 GTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT
* * * *
65215 GAGGCATGAACTTAAACTTTTCAAAAATTGGTGGGAAAAATGCCCTTCTTGCAAAACCAAAGCAT
259 GAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCAT
* * *
65280 CAATATCGCTTATCCTAATGAGAACACTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATT
324 CAATATCGCGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATT
* *
65345 AGTTTGACTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCCATCAAAAACGATGGAAA
389 AGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAA
*
65410 GAAAAGCCTTTCTTGCGACACCA
454 GAAAAGCTTTTCTTGCGACACCA
* * * * *
65433 AAGCATCAATGTCAAGCCTCTTATTGATGGGAATGTGATTTTTGTTCCCAATCTTGAAAAGAATG
1 AAGCATCAATGTCATGTCTCCTATTAATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAATG
* * * * *
65498 GGGACTATTATGGGAAACGATGCTCATCTTATTTAAGGGATGAACTTTTATTTTATGGAAAATAG
66 GAGACTATTACGAGAATCGATGCTCGTCTTATTTAAGGGATGAACTTTTATTTTATGGAAAATAG
* * * *
65563 AGCAAAGAAAATATTTCCTTGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAGAATGT
131 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
*
65628 GCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGCTTT-TCGT-ACTT
196 GCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG-TTTGTC-TCATTT
* ** ***
65691 GAGGCATGAACTTAGACTTTACAAAAATTGGTTGGAAAAATGCCCGTCTTTTAAAACCAAAGCAT
259 GAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCAT
* *
65756 CAATATTGCGTATCCTAATGAGAAAACTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATT
324 CAATATCGCGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATT
* * *
65821 AGTTTGGCTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCCATCAAAAAAGGTGGAAA
389 AGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAA
65886 GAAAAGCTTTTCTTGCGACACCA
454 GAAAAGCTTTTCTTGCGACACCA
* * *
65909 AAGCATCAATGTTATGTCTCCAATTAATGGGAAAGTGATTTTGGTTCCCAATCTTGAAAAGAATG
1 AAGCATCAATGTCATGTCTCCTATTAATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAATG
* * * * * * * *
65974 GGGACTACTACGAGAAT-TAGTGCTCATCTTATTTAAGGGTTGAACTTTGATTTCATGAAAAATA
66 GAGACTATTACGAGAATCGA-TGCTCGTCTTATTTAAGGGATGAACTTTTATTTTATGGAAAAT-
* * *
66038 ACGGCACAGAAAAGATTTCCATGCAAAA-AAAATCATCAATATCATTTATCCTAAAGAGGAGAAT
129 AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
** * ** * * **
66102 GTGCTTATAGTGCCTAATCTTAAAATAAAAAAAGATCATTCCTAGAATCCATGTTTATCAGATTT
194 GTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT
* ***
66167 GAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCCTTCTTTTAAAACCAAAGCAT
259 GAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCAT
* *
66232 CAATATCGCGTATCCTAATGAGAAAACTATATTGATGGTGCCTAATCCTGAAAAGAATGGGGATT
324 CAATATCGCGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATT
* * *
66297 AGTATGACTATTCATGTTTGTCTTATTTAAAAGAGAAACTTTGATTCCATCCAAAAA-GGTGGAA
389 AGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCAT-CAAAAACGGTGGAA
66361 AGAAAAGCTTTTCTTGCGACACCA
453 AGAAAAGCTTTTCTTGCGACACCA
* *
66385 AAGCATCAATGTTATGTCTCCTATTAATGGGAATGTGATTTTGGTTCCCAATCTTAAAAAGAATG
1 AAGCATCAATGTCATGTCTCCTATTAATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAATG
*
66450 GGGACTATTAC-ATGAATCGATGCTCGTCTTATTTAAGGGATGAA-TTTTGATTTTATGGAAAAT
66 GAGACTATTACGA-GAATCGATGCTCGTCTTATTTAAGGGATGAACTTTT-ATTTTATGGAAAAT
* *
66513 AAGGGCAAAGAAAAGATTTTCATACCAAAA-AAAATCATCAATATCATTTATCCTAAT---GAGA
129 -AGGGCAAAGAAAAGATTTCCAT-GCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA
* * * * * * * *
66574 ATGCGCTTATAGTGCCTAATTATAAAATGAATAAAGGTCATTCCTAGAATCCTTGTTTGTCTTAT
192 ATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCAT
* * * * * *
66639 TTGAGGCACGGACTTAGGCTTTACAAAAATTGGTGGGAAAAACGCATTTCTTACGAAACCAAAGC
257 TTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGC
* * * * * *
66704 TTCAATATTGTGTATCCTAATGAGAAGAAC-ATGTTTACT-GTTCCCAATCCTAAAAAGAATGGG
322 ATCAATATCGCGTATCCTAATGAGAA-AACTATGTTTA-TGGTGCCTAATCCTGAAAAGAATGGG
* * *
66767 GATTAGTTTGACTATTC-TGTTTATCTTATTTAAGACACAAACTTTGATTCCATTAAAAACGGTG
385 GATTAGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTG
66831 GAAAGAAAAGCTTTTCTTGCGACACCA
450 GAAAGAAAAGCTTTTCTTGCGACACCA
* * * *
66858 AAGCATCAATGTCATGCCTCCTATTGATGGGAATGTGATATTGGTTCCCAAGCTTGAAAAGAATA
1 AAGCATCAATGTCATGTCTCCTATTAATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAAT-
* * * * *
66923 GG-GACTCTTATGAGAAACGATACTCG-CTTATTTAAGGGATGAACTTTTTTTTTATGGAAAATA
65 GGAGACTATTACGAGAATCGATGCTCGTCTTATTTAAGGGATGAACTTTTATTTTATGGAAAATA
* * *
66986 GGG-AGAATAAAAGATTTCCATACAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAGAAT
130 GGGCA-AAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
* * * ** *
67050 GTGCTTATAGTGCCTAATCACAAAATAAATGAAGATCATTGCTAGAATCTATGTTCATCACATTT
194 GTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT
* * * *
67115 GAGGCATGAACTTAAACTTTTCAAAAATTGGTGGGAAAAATGCCCTTCTTGCAAAACCAAAGCAT
259 GAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCAT
* * *
67180 CAATATCGCTTATCCTAATGAGAACACTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATT
324 CAATATCGCGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATT
* *
67245 AGTTTGACTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCCATCAAAAACGATGGAAA
389 AGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAA
*
67310 GAAAAGCCTTTCTTGCGACACCA
454 GAAAAGCTTTTCTTGCGACACCA
* * * * *
67333 AAGCATCAATGTCAAGCCTCTTATTGATGGGAATGTGATTTTTGTTCCCAATCTTGAAAAGAATG
1 AAGCATCAATGTCATGTCTCCTATTAATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAATG
* * * * *
67398 GGGACTATTATGGGAAACGATGCTCATCTTATTTAAGGGATGAACTTTTATTTTATGGAAAATAG
66 GAGACTATTACGAGAATCGATGCTCGTCTTATTTAAGGGATGAACTTTTATTTTATGGAAAATAG
* * * *
67463 AGCAAAGAAAATATTTCCTTGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAGAATGT
131 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
*
67528 GCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGCTTT-TCGT-ACTT
196 GCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG-TTTGTC-TCATTT
* * ***
67591 GAGGCATGAACTTAGACTTTACAAAAATTGGTTGGAAAAATG-CTCGTCTTTTAAAACCAAAGCA
259 GAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCT-TTCTTGCGAAACCAAAGCA
*
67655 TCAATATCGCGTATCCTAATGAGAAAACTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGAT
323 TCAATATCGCGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGAT
* * *
67720 TAGTTTGGCTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCCATCAAAAAAGGTGGAA
388 TAGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAA
67785 AGAAAAGCTTTTCTTGCGACACCA
453 AGAAAAGCTTTTCTTGCGACACCA
* * *
67809 AAGCATCAATGTTATGTCTCCAATTAATGGGAAAGTGATTTTGGTTCCCAATCTTGAAAAGAATG
1 AAGCATCAATGTCATGTCTCCTATTAATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAATG
* * * * * * *
67874 GGGACTACTACGAGAAT-TAGTGCTCGTCTTATTTAAGGGTTGAACTTTGATTTCATGAAAAATA
66 GAGACTATTACGAGAATCGA-TGCTCGTCTTATTTAAGGGATGAACTTTTATTTTATGGAAAAT-
* * *
67938 ACGGCACAGAAAAGATTTCCATGCAAAA-AAAATCATCAATATCATTTATCCTAAAGAGGAGAAT
129 AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
** * ** * * **
68002 GTGCTTATAGTGCCTAATCTTAAAATAAAAAAAGATCATTCCTAGAATCCATGTTTATCAGATTT
194 GTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT
* ***
68067 GAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCCTTCTTTTAAAACCAAAGCAT
259 GAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCAT
* *
68132 CAATATCGCGTATCCTAATGAGAAAACTATATTGATGGTGCCTAATCCTGAAAAGAATGGGGATT
324 CAATATCGCGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATT
* * *
68197 AGTATGACTATTCATGTTTGTCTTATTTAAAAGAGAAACTTTGATTCCATCCAAAAA-GGTGGAA
389 AGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCAT-CAAAAACGGTGGAA
*
68261 AGAAAAGCTCTTCTTGCGACACCA
453 AGAAAAGCTTTTCTTGCGACACCA
* *
68285 AAGCATCAATGTTATGTCTCCAATTAATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAATG
1 AAGCATCAATGTCATGTCTCCTATTAATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAATG
* * * * *
68350 GGGACTATTACGAGAATC-AGTGCTCGTCTTATTTAAGGGATGAACATTGATTTCATGAAAAATA
66 GAGACTATTACGAGAATCGA-TGCTCGTCTTATTTAAGGGATGAACTTTTATTTTATGGAAAAT-
* *
68414 ACGGCAAAGAAAAGATTTCCATGCAAAA-AAAATCGTCAATATCATTTATCCTAATGAGGAGAAT
129 AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
* * * * *
68478 GTGCTTATAGTGCCTAATCATAAAATAAATAAAGATCATTCCTAGAATCCTTGTTTGTCTCATTT
194 GTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT
* * * * *
68543 GAGGCACG-ATTTAGACTTTACAAAAATTGGTGGG-AAAACGCATTTCTTGCGAAACCAAAGCTT
259 GAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCAT
* * * * * *
68606 CAATAACGTGCATCCTAATGAGAAGAAC-ATGTTTATGGTGCCAAATCCTGAAAAGAATGAGGAG
324 CAATATCGCGTATCCTAATGAGAA-AACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGAT
* * * * * *
68670 TAGTATGGCTACTCATGTTTG-CTTTATTAAAGAGAAAAACTTTGA-TCCATCAAAAACGGTGCA
388 TAGTTTGACTATTCATGTTTGTC-TTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGA
*
68733 AAGAAAAGCTTTTCTTGCGACCCCA
452 AAGAAAAGCTTTTCTTGCGACACCA
* *
68758 AAGCATCAATGTCTTGTCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAATG
1 AAGCATCAATGTCATGTCTCCTATTAATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAATG
* *
68823 GGGACTATTGCGAGAATCGATGCTCGTCTTATTTAAGGGATGAAC-TTT-TTTTATGGAAAATAG
66 GAGACTATTACGAGAATCGATGCTCGTCTTATTTAAGGGATGAACTTTTATTTTATGGAAAATAG
* * * * * *
68886 GGCAAAGAAAAGATTTCCATG-AAAAAAAAATCATCATTATCGTTTCTCCTACTGAGGGGAATGT
131 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
*
68950 GCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTAT-TGCATTTG
196 GCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCT-CATTTG
* * * * *
69014 AAGCA--AACCTAGACTTCACAAAAATTGGTGGGAAAGATGCCTTTCTT-CTGAAACCAAAGTAT
260 AGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGC-GAAACCAAAGCAT
* * * *
69076 CAATATCGCATATCCTAATGAGAAGACTATATTTGTGGTGCCTAATCCTGAAAAGAAT-GGGATT
324 CAATATCGCGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATT
* * *
69140 AGTTTGACTATTCAAGTTTATCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGCAAA
389 AGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAA
*
69205 GAAAAGCTTTTCTTGTGAC-CCTA
454 GAAAAGCTTTTCTTGCGACACC-A
* * *
69228 AAGCATCAATGTCTTGTCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTTGAAAATAATA
1 AAGCATCAATGTCATGTCTCCTATTAATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAAT-
* * * *
69293 GG-GACTATTATGAGAAACGATGCTCGTCTTATTTAAGGGATAAACTTTGATTTTATGGAAAATA
65 GGAGACTATTACGAGAATCGATGCTCGTCTTATTTAAGGGATGAACTTTTATTTTATGGAAAAT-
* * *
69357 AGGGCAAAGAAAAGATTTCCATGCAAAA-AAAATCGTCAATACCATTTATCTTAATGAGGAGAAT
129 AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
* * * ** *
69421 GTGCTTATAGTGCCTAATCATAAAATGAATAAAGATCATTCCTAGAATCTTTGTTTATCTCATTT
194 GTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT
* * * *
69486 GAGGCATAAACTTAGACTTTAGAAAAAATTGGTGGGAAAAACGCATTTCTTGCGAAACCAAAGCA
259 GAGGCATGAACTTAGACTTTA-CAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCA
** * *
69551 TCAATATCATGTATCCTAATGAGAAGAACT-TGTTTATGGTGCCCAATCTTGAAAAGAATGGGGA
323 TCAATATCGCGTATCCTAATGAGAA-AACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGA
* * * * ** * * * *
69615 GTAGTATGGCTACTCATGTTTACCTTATTTAAGAGACAAACTTTGAATCCATAAAAAACAGTGCA
387 TTAGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGA
* * **
69680 AAGAAAAGCTTTTTTTGTGACAATA
452 AAGAAAAGCTTTTCTTGCGACACCA
* * * * * *
69705 AATCATCAATGTCATGTATCCTATTAAAGGGAATTTG-TTTTCGGTACCGAATCTTGAAAAGAAT
1 AAGCATCAATGTCATGTCTCCTATTAATGGGAATGTGATTTT-GGTTCCCAATCTTGAAAAGAAT
* * * * * * * *
69769 AGAGATTGTTACGAGAATTGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTATGGAATATA
65 GGAGACTATTACGAGAATCGATGCTCGTCTTATTTAAGGGATGAACTTTTATTTTATGGAAAATA
* * *
69834 AGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGA-G-GAATG
130 GGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATG
* * * * *
69897 TGCATATAGTGCCTAATCATAAAATGAATAAAGATCATTCCTAGAATCCTTGTTTGTCTCATTTG
195 TGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG
* * * * *
69962 AGGCATGAACATAGACTTTACAAAAATTGGTAGGAAAAATGCATTTCTTGCGAGACCAAAGCTTC
260 AGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATC
** * * * *
70027 AATATCATGCATCCTAATGAGAAGAAC-ATGTTTATGGTGCCCAATCCTGAAAAGAATAGGGAGT
325 AATATCGCGTATCCTAATGAGAA-AACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATT
* * * * * *
70091 AGTATGGCTACTCATGTTTGCCATATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGCAAA
389 AGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAA
* *
70156 GAAAAGCTTTTCTTACGACCCCA
454 GAAAAGCTTTTCTTGCGACACCA
** *
70179 AAGCATCAATGTTTTGTCTCCTATTGATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAATG
1 AAGCATCAATGTCATGTCTCCTATTAATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAATG
* * *
70244 GGGACTATTACGAGAATCGATGCTCATCTTATTTAAGCGATGAACTTTTATTTTATGGAAAATAG
66 GAGACTATTACGAGAATCGATGCTCGTCTTATTTAAGGGATGAACTTTTATTTTATGGAAAATAG
* * * * * * * *
70309 GGCAAAGTAAAGATTTCCATGAAAAAGAAAATCATCATTGTCATTTCTCCTACTAAGGGGAATGT
131 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
* *
70374 GCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCAATGTTTAT-TGCATTTG
196 GCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCT-CATTTG
* * * * * *
70438 AAGCATGAACCTAGACTTCACAAAAATTGGTGGGAAAGATGCCTTTCTTGCGAAACCAAAGTATT
260 AGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATC
** * * *
70503 AATATCGTATATCCTAATGAGAAGACTATATTTATGGTGCCTAATCCTGAAAAAAATGGGGATTA
325 AATATCGCGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTA
* *
70568 GTTTGACTATTCATGTTTATCTTATTTAAGAGACAAACTTTGATTTCATCAAAAACGGTGGAAAG
390 GTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAG
*
70633 AAAAGCTTTTCTTGCGGCACCA
455 AAAAGCTTTTCTTGCGACACCA
* * * *
70655 AAGCATCAATGTCATGCCTCCTATTGATGGGAATGTGATTTTGGTTCCAAATCTTGCAAAGAATG
1 AAGCATCAATGTCATGTCTCCTATTAATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAATG
* * *
70720 GAGACTATTACGAGAAACGATGCTCATCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAA
66 GAGACTATTACGAGAATCGATGCTCGTCTTATTTAAGGGATGAACTTTTATTTTATGGAAAAT-A
* *
70785 GGGCAAAGAAAAGATTTCCACGCAAAA-AAAATCATCAATATCATTTATCTTAATGAGGAGAATG
130 GGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATG
* * * *
70849 TGCTTATAGTGCCTAATCATAAAATGAATAAAGATCATTCCTAGAATCCTTGTTTGTCTCATTTG
195 TGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG
** * * * *
70914 AGGCACAAACTTAGACTTTACAAAAAAATTGGTGGGAAAAACGCATTTCTTGCGACACCGAAGCA
260 AGGCATGAACTTAGACTTTAC--AAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCA
** * *
70979 TCAATATCATGTATCCTAACGAGAAGAA-TATGTTTATGGTGCCTAATCCTGAAAAGAATGGGTA
323 TCAATATCGCGTATCCTAATGAGAA-AACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGA
* * * * * * * * *
71043 GTAGTATGGCTACTCATGTTTGCCTTATTTAAGAGACAAACTCTGATTCCATAAAAAATGGTAGA
387 TTAGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGA
* * ** **
71108 AAGAAAAGGTTTTTTTTGTTACAATA
452 AAGAAAA-GCTTTTCTTGCGACACCA
* * * *
71134 AAGCATCAATGTCATGTATCCTATTAAAGGGAATGTG-TTTTCGGTACCGAATCTTGAAAAGAAT
1 AAGCATCAATGTCATGTCTCCTATTAATGGGAATGTGATTTT-GGTTCCCAATCTTGAAAAGAAT
* * * * * * * *
71198 GGAGATTGTTACGGGAATTGATGCTTGTCTTATTTAAGGGGTGAACTTTGATTTCATGGAAAATA
65 GGAGACTATTACGAGAATCGATGCTCGTCTTATTTAAGGGATGAACTTTTATTTTATGGAAAATA
* * * * *
71263 AGGCAAAGAAAAGATTTTCATGCGAAAGAAAATCATCAATATCGTTTCTCCTAATGA-G-GAATG
130 GGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATG
* * *
71326 TGCATATAGTGCCTAATCACAAAATGAATAAAGATCA-TAGCTAGAATCCATGTTTGTCCCATTT
195 TGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA-CTAGAATCCATGTTTGTCTCATTT
* * **
71390 GAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCATTCTTACGAAACCAAAATAT
259 GAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCAT
* * * * ** * * * *
71455 CAATATCGTGTATCTTATTGAGAAGACTATGTTTACAGTACCTAATCCTAAAAAAAAATGGGGAA
324 CAATATCGCGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCT-GAAAAGAATGGGGAT
** * * * * * * *
71520 TAGAATGAGTATTCAAGTTTGTCTGATTTAATAGACAAGCGTTGATTCTATCAAAAACGGTGGAA
388 TAGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAA
*
71585 AGGAAAGCTTTTCTTGCGACACCA
453 AGAAAAGCTTTTCTTGCGACACCA
* * * * * *
71609 AAGCATCAATGTCATGTATCCTATTAAAGGGACTGTGTTTTTGGCTCCCAATCTTGAAAAAAATG
1 AAGCATCAATGTCATGTCTCCTATTAATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAATG
* * * * * * * *
71674 AAGATTGTTACGAGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATTGAAAATAA
66 GAGACTATTACGAGAATCGATGCTCGTCTTATTTAAGGGATGAACTTTTATTTTATGGAAAATAG
* * * *
71739 TGCAAATAAAAGATTTCAATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGA-G-GAATGT
131 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
* *
71802 TCTTATAGTGCCAAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTC-CTATTTG
196 GCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTC-ATTTG
* * * *
71866 AGGCATGAACTTAGACTTGACAAAAATTGGTGGGAAAAATGCCTCTCTTGCGATACCAAAACATC
260 AGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATC
** *
71931 AATATCATGTATCTTAATGAGAAGAA-TATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATT
325 AATATCGCGTATCCTAATGAGAA-AACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATT
* * **
71995 AGTATGGCTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAATTGGTGGAAA
389 AGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAA
72060 GAAAAGCTTTTCTTGCGACACCA
454 GAAAAGCTTTTCTTGCGACACCA
* * *
72083 AAGCATCAATGCCATG-----TATTGAA-GGGAATGT-ATTTTTCGTTCCCAATCTTGAAAATAA
1 AAGCATCAATGTCATGTCTCCTATT-AATGGGAATGTGA-TTTTGGTTCCCAATCTTGAAAAGAA
* * * * * * * *
72141 TGGAGATTGTTATGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT
64 TGGAGACTATTACGAGAATCGATGCTCGTCTTATTTAAGGGATGAACTTTTATTTTATGGAAAAT
* * * * *
72206 AGGGTAAAGAAAAGATTTCGATACCAAAGAAAATCATCAATATCATTTATCCTAATGGGGAGAAT
129 AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
*
72271 GTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTT
194 GTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT
* * * * * *
72336 AAGGAATGAACTTAGACTTTACAAAAATTAGTGGGAAAAATGCCTCTCTGGCGAAACCAAAACAT
259 GAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCAT
* * * * *
72401 TAATATTGCGTATCCTAATGAGAAGAA-TATGTTTATGGTGCTTAATCTTGAGAAGAATGGGGAT
324 CAATATCGCGTATCCTAATGAGAA-AACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGAT
* * * * * *
72465 TGGTATGACTATTCATGCTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAATGGTGGAA
388 TAGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAA
* * *
72530 AGGAAAGCTTTACTTGTGACACCA
453 AGAAAAGCTTTTCTTGCGACACCA
* * * * *
72554 TAGCATCAATGTCTTGTATGCTATTGAA-GGGACA-GTGTTTTTGGCTT-CCAATCTTGAAAAGA
1 AAGCATCAATGTCATGTCTCCTATT-AATGGGA-ATGTGATTTTGG-TTCCCAATCTTGAAAAGA
* * * * * * *
72616 ATGGAGATTGTTACGAGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAACA
63 ATGGAGACTATTACGAGAATCGATGCTCGTCTTATTTAAGGGATGAACTTTTATTTTATGGAAAA
* * *
72681 TAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAAT-AAG-GAA
128 TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
* * * * *
72744 TGTGCTTGTAGTACCTAATCACAAAATGAGTGAAGATCTTTACTAGAATCCATGTTTGTCCCATT
193 TGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATT
* * * * *
72809 TGAGGCATGAACTTAAACTTTGCAATAATTGATGGGAAAAATGCCTTTCTTGAGAAACCAAAGCA
258 TGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCA
* * * * * * *
72874 TCAATATCGTGTATCTTAAAT-AGATGAA-GATGTTTAAGGTACCTAATCCTGTAAAGAATGGGG
323 TCAATATCGCGTATCCT-AATGAGA-AAACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGG
* * *
72937 ATTAGTTTGACCATTCTTGTTTGTCTTATTTAAGAGACAAACTTCGATTCCATCAAAAACGGTGG
386 ATTAGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGG
*
73002 AAAGAAAAGCTTTTCTTGCGATACCA
451 AAAGAAAAGCTTTTCTTGCGACACCA
* * * * *
73028 AAGCGTCAATATCATGTAC-CCTATTGAA-GGGAATGTGGTTTTGGTGCCAAATCTTGAAAAGAA
1 AAGCATCAATGTCATGT-CTCCTATT-AATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAA
* * * * * *
73091 TGTAGATTGTTACGAGAATCGATGCTCATCTTATTTAAGGGATGAACTTTGATTCTATGGAAAAT
64 TGGAGACTATTACGAGAATCGATGCTCGTCTTATTTAAGGGATGAACTTTTATTTTATGGAAAAT
* ** * * *
73156 AAGGCAAAGAAAAGATTTCGTTGCAAAAGAAGATCATCAATATCATTTCTGCTAATGA-G-GAAT
129 AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
*
73219 GTGCTTATATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCCCAT
194 GTGC-T-TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCAT
* *
73284 TTGAGGCATGAACTTAGACTTCACAAAAATTGGTGGGAAAAATGCCTTTTTTGCGAAACCAAA--
257 TTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGC
* * * * * *
73347 ATGAAATATTGCGTATCCTAATGAGAAGACAATGTTTATGGGGCCTAAT-CTGGAAAAAAAATGG
322 AT-CAATATCGCGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCT-G-AAAAGAATGG
* ** *** * * *** *
73411 GGAATAGAATGGGAATTCAAGTTTGTCTTACTTAAGAGACAAACTTTGATTTTGTCAAAAATGGT
384 GGATTAGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGT
** * * **
73476 GGAAAGAAAATATTTACTTGTGATGCCA
449 GGAAAGAAAAGCTTTTCTTGCGACACCA
* * * * * *
73504 AAGCATCAATGTCATGTATCCTATTGAA-GGGACTATGTTTTTGGCTCCTAATCTTGAAAAGAAT
1 AAGCATCAATGTCATGTCTCCTATT-AATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAAT
* * * *
73568 GGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTT-TTTTATGAAAAATA
65 GGAGACTATTACGAGAATCGATGCTCGTCTTATTTAAGGGATGAACTTTTATTTTATGGAAAATA
* * * *
73632 GGGCAAAGAAAATATTTCTATGCAAAAGAGAATCATCAATATCATTTATCCTAGTGAGGAGAATG
130 GGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATG
* * * * * *
73697 TGCTTATAGCGCCAAATCAAAAAATGAATGACGATCATTACTAGAATCCATGTTTGCCTCATTTA
195 TGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG
* * * * * * *
73762 AGGCATGAACTTAGACTTTACAAAAATTGGTGCGAAATATGCTTTTATTTCAAAACCGAAA-TAT
260 AGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACC-AAAGCAT
* * * * *
73826 CAATATCACGTATCCTAATGAGAAGACTATGTTTATGGTGTCTAATCCTGATAGGAATGGGGATT
324 CAATATCGCGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATT
* * * * * * *
73891 AGTATGACTATTCATGTTTGTCCTT-TTTATGAGTCAAACTTTAATTCCATAAAAAACGATGGTA
389 AGTTTGACTATTCATGTTTGT-CTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAA
*
73955 AGAAAAGCTTTCCTTGCGACACCA
453 AGAAAAGCTTTTCTTGCGACACCA
* * * ** * * ** *
73979 AAGCATCAATGTCGTGTATTCTACGAA-GAGAATGTGTTTTTGGCACCCAATCTTGGAAAGAATG
1 AAGCATCAATGTCATGTCTCCTATTAATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAATG
* * * * * * *
74043 GAGATTGTTACGAGAATTGATGGTTGTATTATTTAAGGGATTAACTTTTATTTTATGGAAAATAG
66 GAGACTATTACGAGAATCGATGCTCGTCTTATTTAAGGGATGAACTTTTATTTTATGGAAAATAG
* * * *
74108 GGCAAAGAAAAGATTTTCATGTAAAAGAAAATCATAAATATCATTTATCCTAGTGAGGAGAATGT
131 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
* * * * * * * *
74173 GCTTATAGCGCCAAATCAAAAAATGAATGACGATCATTACTAAAATCCATGTCTGCCTCATTTAA
196 GCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA
* * * * *
74238 GGCATGAACTTAGACTTTACAAAAATTGGTGAGAAATATG-CTTTATTTCGAAACCGAAA-TATC
261 GGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACC-AAAGCATC
** * * * * *
74301 AATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGTCTAATCCTGATAGGAATAGGGATTA
325 AATATCGCGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTA
* * * * * * *
74366 GTATGACTATTCATGTTTGTCCTT-TTTATGAGTCAAACTTTAATTCCATAAAAAACGATGGTAA
390 GTTTGACTATTCATGTTTGT-CTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAA
74430 GAAAAG-TTTTCCTTGCGACACCA
454 GAAAAGCTTTT-CTTGCGACACCA
* * * ** * * ** *
74453 AAGCATCAATGTCGTGTATTCTACGAA-GAGAATGTGTTTTTGGCACCCAATCTTGGAAAGAATG
1 AAGCATCAATGTCATGTCTCCTATTAATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAATG
* * * * * *
74517 GAGATTGTTACGAGAATTGATGCTTGTGTTATTTAAGGGATTAACTTTTATTTTATGGAAAATAG
66 GAGACTATTACGAGAATCGATGCTCGTCTTATTTAAGGGATGAACTTTTATTTTATGGAAAATAG
* * *
74582 GGCAAAGAAAAGATTTCCATGTAAAAGAAAATCATAAATATCATTTATCC-AAGTGAGAAGAATG
131 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAA-TGAGGAGAATG
* * * * * *
74646 TGCTTATAGAGCGTAATCACAAAATGAATGACGATCATTACTAGAATCCATGTTTGCCTCATCTA
195 TGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG
* * * **
74711 AGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCTTTTCTTTCAAAACCAAAATATC
260 AGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATC
* * * * * * * *
74776 AATATCACATATCCTATTGAGAAGACTAAGTTTCTGGTGCATAATCCTAAAAAGAATGGGGATTA
325 AATATCGCGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTA
* * * * * * * *
74841 GTATGACTTTTCATGTTTGTCATATTTAAAAGACAAACTTTGATTCCATAAAAAATGGTAGAAGG
390 GTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAG
* **
74906 AAAAGCTTTTCTTACGATGCCA
455 AAAAGCTTTTCTTGCGACACCA
* * *
74928 AAGCATCAATGTCATGTATCCTATTAATGGGAATGTGTTTTTGGTACCCAATCTTGGAAAGATAG
1 AAGCATCAATGTCATGTCTCCTATTAATGGGAATGTGATTTTGGTTCCCAATCTT-G-AA-A-AG
* * * * ** * ** * * *
74993 ATTGGAGATTGTTGCGAGAAAGGATGATTATCTTATTTAAGGGATAAACTTTGATTTTAAGGAAA
62 AATGGAGACTATTACGAGAATCGATGCTCGTCTTATTTAAGGGATGAACTTTTATTTTATGGAAA
* * *
75058 ATAGAGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAGA
127 ATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA
* * * *
75123 ATGTGCTTATAGTGCCTAATCTCAAAATGAATGATGATCATTACTAGAATACATGTTTATCTCAT
192 ATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCAT
* * ** * * * * *
75188 TTGAGGCATGAACTTAGACTCTACAAAAATTTGTCAGAATAATGTCTTTGTTGCGAAACGAAAAC
257 TTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGC
* * * * * * **
75253 ATTAATATCACGTATCCTAACGAGAAGACTACGTTTATGCTGCCTAATCCTGAAAAGAATAAGGA
322 ATCAATATCGCGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGA
* * * *
75318 TTAGTATGACTATTAATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATGAAAAACAGTGG-
387 TTAGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGA
75382 AAGAAAAAGCTTTTCTTGCGACACCA
452 AAG-AAAAGCTTTTCTTGCGACACCA
* * * * * *
75408 AAGCTTCATTGTCATGTATCTTATTGATGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATG
1 AAGCATCAATGTCATGTCTCCTATTAATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAATG
* * * * *
75473 GAGACTATTACAAGAATCGATACTTGTCTTATTTAAGCGATGAACTTTTATTTTATGGAAAGTAG
66 GAGACTATTACGAGAATCGATGCTCGTCTTATTTAAGGGATGAACTTTTATTTTATGGAAAATAG
* * * * *
75538 GGCAAAGAAAAGATTTTCATGCAAAATAAAATCATCAATATCGTTTCTCCAAATGA-G-GAATGT
131 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
* * *
75601 GCTTATAGTGCCTAATCACAAAATGAATGATGATCTTTACTAGAATACATGTTTGTCTCATTTGA
196 GCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA
* * * * * **
75666 GGCACGAACTTATG-CTTTACAAATATTTGGTTGGAATAATGTCTTTCTTGCGAAACCAAAATAT
261 GGCATGAACTTA-GACTTTACAAA-AATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCAT
* * * *
75730 CAATATCGCATATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGATTGGGGATT
324 CAATATCGCGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATT
* * * * *
75795 AGTTTGACCATTCATGTTTGCCTTATTTAAGAGACAAACATTGATTCCCTCAAAAACGGTGTAAA
389 AGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAA
* * *
75860 GAAAAGATTTTCTCGCGATACCA
454 GAAAAGCTTTTCTTGCGACACCA
* * * * *
75883 AAGCATCAATGTCATGTATCCTATTAAAGGGAATGTGTTTTTGGTACCAAATCTTGAAAAGAATG
1 AAGCATCAATGTCATGTCTCCTATTAATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAATG
* * * * ** * *
75948 TAGATTGTTATGAGAATCGATGCTTATCTTATTTAAGCGATGAACTTTTATTTTATGAAAAATAG
66 GAGACTATTACGAGAATCGATGCTCGTCTTATTTAAGGGATGAACTTTTATTTTATGGAAAATAG
*
76013 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAGTGAGGAGAATGT
131 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
* * * * *
76078 GCTTATAGTGCCTAATCACAAAATGAATGACGATCATTTCTAGAATCCCTATTTGTCTCATTTAA
196 GCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA
* * *
76143 GGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACTAAAGCATTA
261 GGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCA
*** * *
76208 ATATCATTTATCCTAATGAGAAGAAC-ATGTTTATGGTGCCTAATCCAGAAAAGAATGGGTATTA
326 ATATCGCGTATCCTAATGAGAA-AACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTA
* * * * * *
76272 GTATGACTATTCATGTTTGTCTTATTTAGGAGACAAACTTTGCTGCTATCAAAAACAGTGGAAAG
390 GTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAG
*
76337 AAAAGCTTTTCATGCGACACCA
455 AAAAGCTTTTCTTGCGACACCA
** * * * * * * * *
76359 AAGTGTCAATGTCATGTATCCTAATGAA-GGAAATTTG-TTTTAGGTACCTAATCCTGAAAATAA
1 AAGCATCAATGTCATGTCTCCT-ATTAATGGGAATGTGATTTT-GGTTCCCAATCTTGAAAAGAA
* * * * * * *
76422 ---AGGC---TACAAGAATCGATGCTCATCTTATTGAAGGGATGAACTTTGATTATAAGGAAAAT
64 TGGAGACTATTACGAGAATCGATGCTCGTCTTATTTAAGGGATGAACTTTTATTTTATGGAAAAT
* * * * **
76481 AGGGCAAATAAAAGATTTCCAAGCAAAAGAAAATAATCAATATCTTTTATTGTAATGAGGAGAAT
129 AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
* * * * *
76546 ATGCTTATCGTGCCTAATCACAAAATGAATGACGATCATTACTGGAATCTATGTTTGTCTCATTT
194 GTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT
* * * * * *
76611 GATGCATGAACTTAGACTTTACAAAAATTGGAGAGAAAAATGCTTTTCTTGCAAAACCAAAACAT
259 GAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCAT
* * * * * * *
76676 TAATATCGTGTACCCTAAAGAGAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATT
324 CAATATCGCGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATT
* *
76741 AGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATAAAAAACGGTGAAAA
389 AGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAA
*
76806 GAAAAGCTTTTCTTGTGACACCA
454 GAAAAGCTTTTCTTGCGACACCA
* * * * * * ** *
76829 AAGCATCAACGTCGTGTATCTTATTAAAGGGAATGTGTTTTTGGCACCCAATCTTGGAAAGAATG
1 AAGCATCAATGTCATGTCTCCTATTAATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAATG
* * ** * *
76894 GAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGTGCTTTGATTTTAAGGAAAATAG
66 GAGACTATTACGAGAATCGATGCTCGTCTTATTTAAGGGATGAACTTTTATTTTATGGAAAATAG
* ** * * *
76959 GGCAAATAAAAGATTTTTATTCAAAAGAAAATCGTCAATATCATTTATCCTAATGTGGAGAATGT
131 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
*
77024 GCTTATAGTGACTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA
196 GCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA
** * * * * * *
77089 CACACGAACTTAAACTTTACAAAAATTGGTGGTAAAAATACCTTTCTTGGGAAACCAAAACATCA
261 GGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCA
* ** ** * *
77154 ATTTCATGTATCCTAATGAGAAGAAC-ATGTTTACAGTGCCTAATCTTGAAAAGAATGGGGATTG
326 ATATCGCGTATCCTAATGAGAA-AACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTA
** * * * *
77218 GTTTGTGTATTCATGTTTGTCCTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGTAAG
390 GTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAG
* *
77283 AAAAGCTTTCCTTGTGACACCA
455 AAAAGCTTTTCTTGCGACACCA
* * * * * ** * *
77305 AAGCATTAATGTCATGTATCCTACTGAA-GAGAATGTGTTTTTGGCACCTAATCTTGGAAAGAAT
1 AAGCATCAATGTCATGTCTCCTA-TTAATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAAT
* * * * * * *
77369 GGAGA-TTTTTCTGAGAATCGATGCTTG-CATTATTTAAGGGA-CAACGTTTGTTTTATTGAAAA
65 GGAGACTATTAC-GAGAATCGATGCTCGTC-TTATTTAAGGGATGAACTTTTATTTTATGGAAAA
* *
77431 TAGGGCAAAGAAAAGATTTCCATGCAAAAAAAAAATCATCAATATCATTTATCCTAGTGAGGAGA
128 TAGGGCAAAGAAAAGATTTCCATGC-AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA
77496 ATGTGC
192 ATGTGC
77502 ACCTCATCAC
Statistics
Matches: 13530, Mismatches: 1671, Indels: 394
0.87 0.11 0.03
Matches are distributed among these distances:
469 220 0.02
470 729 0.05
471 378 0.03
472 87 0.01
473 559 0.04
474 2318 0.17
475 2278 0.17
476 4704 0.35
477 1214 0.09
478 490 0.04
479 150 0.01
480 401 0.03
481 2 0.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (476 bp):
AAGCATCAATGTCATGTCTCCTATTAATGGGAATGTGATTTTGGTTCCCAATCTTGAAAAGAATG
GAGACTATTACGAGAATCGATGCTCGTCTTATTTAAGGGATGAACTTTTATTTTATGGAAAATAG
GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
GCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA
GGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCA
ATATCGCGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAG
TTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGA
AAAGCTTTTCTTGCGACACCA
Found at i:80989 original size:158 final size:158
Alignment explanation
Indices: 80827--81118 Score: 408
Period size: 158 Copynumber: 1.8 Consensus size: 158
80817 GCCTAATCCC
* ** * *
80827 GAAAAAAATGGGGAATAG-AATGAGTTTTCATGTTTATCTTATTTAAGAGACAAACTTTGATTCT
1 GAAAAAAATGGGGAAT-GTAACGAGAATTCATGCTTAACTTATTTAAGAGACAAACTTTGATTCT
* * * ** *
80891 ATCAAAAATGGTGGAAAGAAAAG-ATTTTCTTGTGACACCAAATCATCAATGCCATTTATCCTAT
65 ATCAAAAATGGTGGAAAGAAAAGCA-TTTCTAGTGACACCAAAACAACAATGCCACGTATCCTAC
80955 TGAAGGGATGGTGGTTTGGCTCCCAATCTT
129 TGAAGGGATGGTGGTTTGGCTCCCAATCTT
* * * *
80985 GAAAAGAATGGTGACTGTAACGAGAATTGATGCTTAACTTATTTAAGAGACAAACTTTGATTCTA
1 GAAAAAAATGGGGAATGTAACGAGAATTCATGCTTAACTTATTTAAGAGACAAACTTTGATTCTA
*
81050 TCAAAAATGGTGGAAAGAAAAGCATTTCTAGTGACACCAAAACAACAATGTCACGTATCCTACTG
66 TCAAAAATGGTGGAAAGAAAAGCATTTCTAGTGACACCAAAACAACAATGCCACGTATCCTACTG
81115 AAGG
131 AAGG
81119 AAATGTGTTT
Statistics
Matches: 116, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
157 1 0.01
158 114 0.98
159 1 0.01
ACGTcount: A:0.37, C:0.14, G:0.20, T:0.29
Consensus pattern (158 bp):
GAAAAAAATGGGGAATGTAACGAGAATTCATGCTTAACTTATTTAAGAGACAAACTTTGATTCTA
TCAAAAATGGTGGAAAGAAAAGCATTTCTAGTGACACCAAAACAACAATGCCACGTATCCTACTG
AAGGGATGGTGGTTTGGCTCCCAATCTT
Found at i:81214 original size:158 final size:158
Alignment explanation
Indices: 80870--81235 Score: 405
Period size: 158 Copynumber: 2.3 Consensus size: 158
80860 TTATCTTATT
* *
80870 TAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGATTTTCTTGTGACACCAAATC
1 TAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGATTTTCTAGTGACACCAAAAC
* ** * * * * * *
80935 ATCAATGCCATTTATCCTATTGAAGGGATGGTGGTTTGGCTCCCAATCTTGAAAAGAATGGTGAC
66 AACAATGCCACGTATCCTACTGAAGGAATGGTGGTTTGGCTCCCAATCCTAAAAACAATGGAGAC
* * **
81000 TGTAACGAGAATTGATGCTTAACTTATT
131 TGTAACAAGAATCGATGCTTAACTTAAG
81028 TAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCA-TTTCTAGTGACACCAAAA
1 TAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAG-ATTTTCTAGTGACACCAAAA
* * * *
81092 CAACAATGTCACGTATCCTACTGAAGGAAAT-GTGTTTTAGGTTCCCAATCCTAAAAACTATGGA
65 CAACAATGCCACGTATCCTACTGAAGG-AATGGTGGTTT-GGCTCCCAATCCTAAAAACAATGGA
* **
81156 GACTGTTACAAGAATCGATGCTTGTCTTAAG
128 GACTGTAACAAGAATCGATGCTTAACTTAAG
* ** * * * * * *
81187 TAAGGGATGAACTTCGATTTTATAAAAAATAGAGCAAAGAAAAG-TTTTC
1 TAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGATTTTC
81236 CCTACCAAAT
Statistics
Matches: 173, Mismatches: 31, Indels: 8
0.82 0.15 0.04
Matches are distributed among these distances:
158 92 0.53
159 81 0.47
ACGTcount: A:0.37, C:0.15, G:0.19, T:0.29
Consensus pattern (158 bp):
TAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGATTTTCTAGTGACACCAAAAC
AACAATGCCACGTATCCTACTGAAGGAATGGTGGTTTGGCTCCCAATCCTAAAAACAATGGAGAC
TGTAACAAGAATCGATGCTTAACTTAAG
Found at i:82043 original size:159 final size:158
Alignment explanation
Indices: 80766--84865 Score: 764
Period size: 159 Copynumber: 25.9 Consensus size: 158
80756 CCTTTCTTGT
* ** ** * * *
80766 GAAACCAAAACA-AAATATTGTGTATCCTAAGGAGAAGAAAATGTTTATGGTGCCTAATCCCGAA
1 GAAACCAAAACATCAATATCATGTATCCTATTGAGAAGAACATGTTTATGGTGCCTAA-ACCTAA
* * * * * ** *
80830 AA-AAATGGGGAATAGAATGAGTTTTCATGTTTATCTTATTTAAGAGACAAACTTTGATTCTATC
65 AATGAATGGAGATTAGTATAAGAATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
* ** *
80894 AAAAATGGTGGAAAGAAAAGAT-TTTCTTGT
130 AAAAAT-ATGGAAAGAAAAG-TGTTTCCAGG
* * ** * * *** * * * *
80924 GACACCAAATCATCAATGCCATTTATCCTATTGA-AGGGATGGTGGTT-TGGCT-CCCAATCTTG
1 GAAACCAAAACATCAATATCATGTATCCTATTGAGA-AGAACATGTTTATGG-TGCCTAAACCT-
* * * * **
80986 AAAA-GAATGGTGACT-GTA-ACGAGAATTGATGCTTAACTTATTTAAGAGACAAACTTTGATTC
63 AAAATGAATGGAGATTAGTATA--AGAATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
* ** * *
81048 TATCAAAAATGGTGGAAAGAAAAGCATTTCTAGT
126 TATCAAAAAT-ATGGAAAGAAAAGTGTTTCCAGG
* * * * * * * * * *
81082 GACACCAAAACAACAATGTCACGTATCCTACTGA-AGGAA-ATGTGTTTTAGGTTCCCAATCCTA
1 GAAACCAAAACATCAATATCATGTATCCTATTGAGAAGAACATGT-TTAT-GGTGCCTAAACCTA
*** * * * ** * ** * *
81145 AAAACTATGGAGACT-GTTACAAGAA-TCGATGCTTGTCTTAAGTAAGGGATGAACTTCGATTTT
64 AAATGAATGGAGATTAG-TATAAGAATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
* *
81208 ATAAAAAATA-GAGCAAAGAAAAGT-TTTCCCTA-C
127 ATCAAAAATATG-G-AAAGAAAAGTGTTT-CC-AGG
* * * * * * ** * * *
81241 CAAA-TAAAATCATCAATATCATTTATCGTAATGAGGAGAATGTGCTTATTGTGCCTAATCAC-A
1 GAAACCAAAA-CATCAATATCATGTATCCTATTGAGAAGAACATGTTTATGGTGCCTAAAC-CTA
* * * * * *
81304 AAATGAATGAAGATCATTACT-AGAATCCATGTTTGT-TTCATTT--GAGGCATGAACTTAGACT
64 AAATGAATGGAGATTAGTA-TAAGAATTCATGTTTGTCTT-ATTTAAGAGACA--AACTTTGA-T
*** ** *
81365 T-TA-CAAAAAT-TGGTGGGTAAAA-TGCTTTTCTTGC
124 TCTATCAAAAATATGGAAAG-AAAAGTG--TTTCCAGG
** * * * * * *
81399 GAAACCAAAACATCAATATCGCGTATCGTAATGAGAAG-ACTATGTTTTTGGCGCCTAATCTTGA
1 GAAACCAAAACATCAATATCATGTATCCTATTGAGAAGAAC-ATGTTTATGGTGCCTAAACCT-A
* * * ** **
81463 AAA-GGATGGGGATTAGTATGATTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCGT
64 AAATGAATGGAGATTAGTATAAGAATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
** * ** *
81527 CAATAACGATGGAAGGAAAAGCT-TTTCTTGA
129 CAA-AAATATGGAAAGAAAAG-TGTTTCCAGG
* * * * ** * * * * *
81558 GACACCAAAGCATCAATGTCATGTATCCTATTGATG-GGAATGTGTTTTTGGTTCCCAATCTTGA
1 GAAACCAAAACATCAATATCATGTATCCTATTGA-GAAGAACATGTTTATGGTGCCTAAACCT-A
* * * ** *
81622 AAA-GAATGGAGACT-GT-TACGAGAATTGATGCTTGTCTTATTTAAGAGATGAACTTTGATTTT
64 AAATGAATGGAGATTAGTATA--AGAATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
** * *
81684 ATGGAAAATAAGGGCAAATAAAAGAT-TTT-CAGG
127 ATCAAAAAT-ATGG-AAAGAAAAG-TGTTTCCAGG
* ** * * * * * * ** *
81717 CAAAAGAAAACCGTCAATATCATTTATCATAATGAGGAGAA-AGTGCTTATCATGCCTAATCAC-
1 GAAACCAAAA-CATCAATATCATGTATCCTATTGAGAAGAACA-TGTTTATGGTGCCTAAAC-CT
** * * * * * *
81780 AAAATGAATGCCGATCATTACT-GGAA-TCTATGTTTGTCTCATTTAAG-GAACGAACTTAGACT
63 AAAATGAATGGAGATTAGTA-TAAGAATTC-ATGTTTGTCTTATTTAAGAG-ACAAACTTTGA-T
* *** ** *
81842 T-TTTACAAAAAT-TGGCGGGAAACA-TGCTTTCTTGC
124 TCTAT-CAAAAATATGGAAAGAAA-AGTG-TTTCCAGG
* *
81877 GAAACCAAAACCTCAATATCATGTATCCTATTGAGAAGAACATGTTTATGGTGCCTAAACCTGAA
1 GAAACCAAAACATCAATATCATGTATCCTATTGAGAAGAACATGTTTATGGTGCCTAAACCTAAA
* * * *
81942 ATGAATGGGGATTAGTATAAGTATTCTTGTTTGTCTTATTTAAGAGACAAACTTTTATTCTATCA
66 ATGAATGGAGATTAGTATAAGAATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
82007 AAAATGATGGAAAGAAAAGTGTTTCCAGG
131 AAAAT-ATGGAAAGAAAAGTGTTTCCAGG
* * * * * * *
82036 GACACCAAAGCATCAATGTCAAGTATCCTA-TG-GAAGGAA-ATGTGTTTTAGGTTCCTAATCCT
1 GAAACCAAAACATCAATATCATGTATCCTATTGAGAA-GAACATGT-TTAT-GGTGCCTAAACCT
** * *** * * * * ** * *
82098 AAAAACAATGGAGATTATTGCGAGAATTGATGCTTATCTTATTTAAGGGATGAACTCTGATTTTA
63 AAAATGAATGGAGATTAGTATAAGAATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
* * * * * *
82163 T-AGAAAATAGGGCAAAGAGAAG-ATCTCAATG
128 TCA-AAAATATGG-AAAGAAAAGTGTTTCCAGG
* ** * * * * ** * * *
82194 CAAAAAAAAATCATCAATATCATTTATCGTAATGAGGAGAATGTGCTTATTGTGCCTAATCAC-A
1 GAAACCAAAA-CATCAATATCATGTATCCTATTGAGAAGAACATGTTTATGGTGCCTAAAC-CTA
* * * * * *
82258 AAATGAATGAAGA-T--TCT-AGAATCCATGTTTGTCTCATTTAAG-GAACGAACTTAGACTT-T
64 AAATGAATGGAGATTAGTATAAGAATTCATGTTTGTCTTATTTAAGAG-ACAAACTTTGA-TTCT
* *** ** *
82317 TTACAAAAAT-TGGCGGGAAACA-TGCTTTCTTGC
127 AT-CAAAAATATGGAAAGAAA-AGTG-TTTCCAGG
* *
82350 GAAACCAAAACCTCAATATCATGTATCCTATTGAGAAGAACATGTTTATGGTGCCTAAACCTGAA
1 GAAACCAAAACATCAATATCATGTATCCTATTGAGAAGAACATGTTTATGGTGCCTAAACCTAAA
* * * *
82415 ATGAATGGGGATTAGTATAAGTATTCTTGTTTGTCTTATTTAAGAGACAAACTTTTATTCTATCA
66 ATGAATGGAGATTAGTATAAGAATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
*
82480 AAAATGATGGAAAGAAAAGCGTTTCCAGG
131 AAAAT-ATGGAAAGAAAAGTGTTTCCAGG
* * * * * * *
82509 GACACCAAAGCATCAATGTCAAGTATCCTA-TG-GAAGGAA-ATGTGTTTTAGGTTCCTAATCCT
1 GAAACCAAAACATCAATATCATGTATCCTATTGAGAA-GAACATGT-TTAT-GGTGCCTAAACCT
** * *** * * * * ** * *
82571 AAAAACAATGGAGATTATTGCGAGAATTGATGCTTATCTTATTTAAGGGATGAACTCTGATTTTA
63 AAAATGAATGGAGATTAGTATAAGAATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
* * * * *
82636 T-AGAAAATAGGGCAAAGAGAAG-ATTTCAATG
128 TCA-AAAATATGG-AAAGAAAAGTGTTTCCAGG
* ** * * * * ** * * *
82667 CAAAAAAAAATCATCAATATCATTTATCGTAATGAGGAGAATGTGCTTATTGTGCCTAATCAC-A
1 GAAACCAAAA-CATCAATATCATGTATCCTATTGAGAAGAACATGTTTATGGTGCCTAAAC-CTA
* * * * * *** * *
82731 AAATGAATGAAGATCATTACT-AGAATCCATGTTTGT-TTCATTTGAG-GTATGCACTTAGGCTT
64 AAATGAATGGAGATTAGTA-TAAGAATTCATGTTTGTCTT-ATTTAAGAG-ACAAACTT-TGATT
*** ** *
82793 -TA-CAAAAAT-TGGTGGGTAAAA-TGCCTTTCTTGT
125 CTATCAAAAATATGGAAAG-AAAAGTG--TTTCCAGG
** * *
82826 GAAACCAAAACATCAATATCGCGTATCCTAATGAGAAG-ACTATGTTTATGGTGCCTAATCCTGA
1 GAAACCAAAACATCAATATCATGTATCCTATTGAGAAGAAC-ATGTTTATGGTGCCTAAACCT-A
* * ** * * ** **
82890 AAA-GAATGGGGATTAGTATGACTATTCATGTTTTTCTTATTTGAGAGGTAAACTTTGATTCCGT
64 AAATGAATGGAGATTAGTATAAGAATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* *** * * ** *
82954 CAGTAACGGTGGAAGGAAAACCT-TTTCTTGA
129 CA-AAAATATGGAAAGAAAA-GTGTTTCCAGG
* * * * ** * * * * *
82985 GACACCAAAGCATCAATTTTC-TGTATCCTATTGATG-GGAATGTGTTTTTGGTTCCCAATCTTG
1 GAAACCAAAACATCAA-TATCATGTATCCTATTGA-GAAGAACATGTTTATGGTGCCTAAACCT-
* * * * ** *
83048 AAAA-GAATGGAGACTATTATGAGAA-TCGATGCTTGTCTTATTTAAGAGATGAACTTTGATTTT
63 AAAATGAATGGAGATTAGTATAAGAATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
** * * *
83111 ATGGAAAATAAGGGAAAATAAAAGAT-TTT-CAAG
127 ATCAAAAAT-ATGG-AAAGAAAAG-TGTTTCCAGG
* ** * * * * * ** *
83144 CAAAAGAAAATCGTCAATATCATTTATCATAATGAGAAGAA-AGTGCTTATCATGCCTAATCAC-
1 GAAACCAAAA-CATCAATATCATGTATCCTATTGAGAAGAACA-TGTTTATGGTGCCTAAAC-CT
* * ** * * *
83207 AAAATGAAT-GACGATCA-TTTCTGGAATCCATGTTTGTCTCATTTAAG-G-CATGAACTTAGAC
63 AAAATGAATGGA-GATTAGTAT-AAGAATTCATGTTTGTCTTATTTAAGAGACA--AACTTTGA-
*** ** *
83268 TT-TA-CAAAAAT-TGGTGGGAAACA-TGCCTTTCTTGC
123 TTCTATCAAAAATATGGAAAGAAA-AGTG--TTTCCAGG
*
83303 GAAACCAAAACATCAATATCATGTATCCTATTGAGAAGAACATGTTTATGGTGCCTAAACCTGAA
1 GAAACCAAAACATCAATATCATGTATCCTATTGAGAAGAACATGTTTATGGTGCCTAAACCTAAA
* * * * ** * ** * *
83368 ATCAATGGGGGTTAGTATGAGTCTTCTTGTTCATCTTATTTAAGAGAGAAACTTTTATTCTATCA
66 ATGAATGGAGATTAGTATAAGAATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
*
83433 AAAATGATGGAAAGAAAAGCGTTTCCA-G
131 AAAAT-ATGGAAAGAAAAGTGTTTCCAGG
* * * * * *
83461 GAACACCAAAGCATCAATGTCAAGTATCCTA-TG-GAAGGAA-ATGTGTTTTAGGTTCCTAATCC
1 GAA-ACCAAAACATCAATATCATGTATCCTATTGAGAA-GAACATGT-TTAT-GGTGCCTAAACC
** * * * * * ** **
83523 TAAAAACAATGGAGACT-GT-TGCGAGAA-TCGATGCTTGTCTTTTTTAAGGGATGAACTTCAAT
62 TAAAATGAATGGAGATTAGTAT--AAGAATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGAT
* * * *
83585 TTTAT-AGAAAAAAGGGCAAAGAAAAGAT-TTT-CATG
124 TCTATCA-AAAATATGG-AAAGAAAAG-TGTTTCCAGG
* ** * * * * ** * * *
83620 TAAAATAATATCATCAATATCATTTATCCTACTGAGGAGAATGTGCTTATTGTGCCTAATCAC-A
1 GAAACCAA-AACATCAATATCATGTATCCTATTGAGAAGAACATGTTTATGGTGCCTAAAC-CTA
* * * * * * * *
83684 AAATGAATGAAGATCATTACT-AGAATCCAT-TTTTTTTTCATTT--GAGGCATGAACTTAGACT
64 AAATGAATGGAGATTAGTA-TAAGAATTCATGTTTGTCTT-ATTTAAGAGACA--AACTTTGA-T
*** *
83745 T-TA-CAAAAAT-TGGTGGGTAAAA-TGCCTTTCTCA-T
124 TCTATCAAAAATATGGAAAG-AAAAGTG--TTTC-CAGG
** * *
83779 GAAACCAAAACATCAATATCGCGTATCCTAATGAGAAG-ACTATGTTTATGGTGCCTAATCCTGA
1 GAAACCAAAACATCAATATCATGTATCCTATTGAGAAGAAC-ATGTTTATGGTGCCTAAACCT-A
* * * * *
83843 AAA-GAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAATCCAT
64 AAATGAATGGAGATTAGTATAAGAATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * * ** *
83907 AAAAAACGATGGAAGGAAAAGCT-TTTCTTGA
129 CAAAAA-TATGGAAAGAAAAG-TGTTTCCAGG
* * * * ** * * * * * *
83938 GACACCAAAGCATCAATGTCATGTATCCTATTGATG-GGAATGTGTTTTTGATTCCCAATCTTGA
1 GAAACCAAAACATCAATATCATGTATCCTATTGA-GAAGAACATGTTTATGGTGCCTAAACCT-A
* * ** * * *
84002 AAA-GAATGGAGACTATTACGAGAA-TCGATGCTTGTCTAATTTAAG-GA-ATGAACTTTGATTT
64 AAATGAATGGAGATTAGTATAAGAATTC-ATGTTTGTCTTATTTAAGAGACA--AACTTTGATTC
** * * *
84063 TATGGAAAATAAGGGCAAAGAAAAG-ATTTCCAAGC
126 TATCAAAAAT-ATGG-AAAGAAAAGTGTTTCC-AGG
* * * * * ** * **
84098 CAAA-GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAATG-CTAAACAC-A
1 GAAACCAAAA-CATCAATATCATGTATCCTATTGAGAAGAACATGTTTATGGTGCCTAAAC-CTA
* * * * * * * * * * * **
84160 AAATGAGTGAAAATCATTACT-AGAATCCATGTTTGTCTCATTTGACACACGAACTTAAACTT-T
64 AAATGAATGGAGATTAGTA-TAAGAATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA-TTCT
*** ** *
84223 A-CAAAAAT-TGGTGGGAAAA-TGCCTTTCTTGC
127 ATCAAAAATATGGAAAGAAAAGTG--TTTCCAGG
* *** * *
84254 GAAACCAAAACATCAATATCATATATCCTAACAAGAAGAACATGTTTATGGTGCCTAATCTTGAA
1 GAAACCAAAACATCAATATCATGTATCCTATTGAGAAGAACATGTTTATGGTGCCTAAACCT-AA
* *
84319 AA-GAATAGG-GATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
65 AATGAAT-GGAGATTAGTATAAGAATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* **
84382 CAAAAGCA-ATGGAAAGAAATGCATTTCCAGG
129 CAAAA--ATATGGAAAGAAAAGTGTTTCCAGG
* * * * * * * *
84413 GACACCAAAGCATTAATGTCATGTATCCTA-AG-GAAGGAA-ATGTGTTTTAGGTTCCTAATCCT
1 GAAACCAAAACATCAATATCATGTATCCTATTGAGAA-GAACATGT-TTAT-GGTGCCTAAACCT
** * * ** ** * * ** *
84475 AAAAAAAATGGAGACTATTACGAGAATTGTTGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA
63 AAAATGAATGGAGATTAGTATAAGAATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
** * * *
84540 TGGAAAATAAAGGCAAA-TAAAG-GATTTCCAAG
128 TCAAAAAT-ATGG-AAAGAAAAGTG-TTTCCAGG
* ** * * * * * * * * * *
84572 CAAAAGAATATCATCAATATCATTTATCATAATGAGGAGAA-AGTGCTTGTCGCGCCTAATCAC-
1 GAAACCAA-AACATCAATATCATGTATCCTATTGAGAAGAACA-TGTTTATGGTGCCTAAAC-CT
* * * * * * * *
84635 AAAATGAAT-GACGATCATTACT-GGAATCCATGTTTGTCTCATTTACG-GCACGAACTTAGACT
63 AAAATGAATGGA-GATTAGTA-TAAGAATTCATGTTTGTCTTATTTAAGAG-ACAAACTTTGA-T
*** * ** *
84697 T-TA-CAAAAAT-TGGTGGGAAAATTGCCTTTCTTGC
124 TCTATCAAAAATATGGAAAGAAAAGTG--TTTCCAGG
* *** * * * *
84731 GAAACCAAAACTTCAATATTGCGTATCCTAATGGGAAG-ACTATGTTTATGGTGCCTAATCCTGA
1 GAAACCAAAACATCAATATCATGTATCCTATTGAGAAGAAC-ATGTTTATGGTGCCTAAACCTAA
* * * ** * * *
84795 AAGGAATGGGGATTAGTATGACTATTCATGTTTGTCTTTTTTAAGAGTCAAACTTTGATTCCATC
65 AATGAATGGAGATTAGTATAAGAATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
84860 AAAAAT
130 AAAAAT
84866 GGGGGTAAAA
Statistics
Matches: 2791, Mismatches: 870, Indels: 561
0.66 0.21 0.13
Matches are distributed among these distances:
154 5 0.00
155 91 0.03
156 72 0.03
157 145 0.05
158 681 0.24
159 1329 0.48
160 399 0.14
161 60 0.02
162 8 0.00
163 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (158 bp):
GAAACCAAAACATCAATATCATGTATCCTATTGAGAAGAACATGTTTATGGTGCCTAAACCTAAA
ATGAATGGAGATTAGTATAAGAATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
AAAATATGGAAAGAAAAGTGTTTCCAGG
Found at i:83489 original size:953 final size:948
Alignment explanation
Indices: 81022--87387 Score: 8160
Period size: 953 Copynumber: 6.7 Consensus size: 948
81012 TGATGCTTAA
* * * * * *
81022 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCATTTCTAGTGACAC
1 CTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAGGAAAAGCTTTTCTTGAGACAC
* * * * * * * * * **
81087 CAAAACAACAATGTCACGTATCCTACTGAAGGAAATGTGTTTTAGGTTCCCAATCCTAAAAACTA
66 CAAAGCATCAATGTCATGTATCCTATTGATGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAA
* * ** * **
81152 TGGAGACTGTTACAAGAATCGATGCTTGTCTTAAGTAAGGGATGAACTTCGATTTTATAAAAAAT
131 TGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAAT
* * * * *
81217 AGAGCAAAGAAAAG-TTTTCCCTA-CCAAATAAAATCATCAATATCATTTATCGTAATGAGGAGA
196 AGGGCAAAGAAAAGATTTT--CAAGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA
* * *
81280 ATGTGCTTATTGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTTTCAT
259 ATGTGCTTA-TATGCCTAATCACAAAATGAATGACGATCATTACTAGAATCCATGTTTGTCTCAT
*
81345 TTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGTAAAATGCTTTTCTTGCGAAACCAAAAC
323 TTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGG-AAAATGCCTTTCTTGCGAAACCAAAAC
** * * * * *
81410 ATCAATATCGCGTATCGTAATGAGAAG-ACTATGTTTTTGGCGCCTAATCTTGAAAAGGATGGGG
387 ATCAATATCATGTATCCTAATGAGAAGAAC-ATGTTTATGGTGCCTAATCCTGAAAAGAATGGGG
* ** *
81474 ATTAGTATGATTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCGTCAATAACGATGG
451 ATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGG
* ** * * *
81539 AAGGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCATGTATCCTATTGATGGGAATGTGTT
516 AAAGAAAAGC-TTTCCAG-GACACCAAAGCATCAATGTCATGTATCCTATGGAAGGAAATGTGTT
* * * * *
81604 TTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATTGATGCTTGTCTTATTTAAGAG
579 TTAGGTTCCTAATCCTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGG
* * * *
81669 ATGAACTTTGATTTTATGGAAAATAAGGGCAAATAAAAGATTTTC-AGGCAAAAGAAAACCGTCA
644 ATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGA-TTTCAATGCAAAAGAAAATCATCA
* *
81733 ATATCATTTATCATAATGAGGAGAAAGTGCTTATCATGCCTAATCACAAAATGAATGCCGATCAT
708 ATATCATTTATCATAATGAGGAGAAAGTGCTTATCGTGCCTAATCACAAAATGAATGACGATCAT
* * * * *
81798 TACTGGAATCTATGTTTGTCTCATTTAAGGAACGAACTTAGACTTTTTACAAAAATTGGCGGGAA
773 TACTAGAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGAC--TTTACAAAAATTGGTGGGAA
* ** *
81863 ACATG-CTTTCTTGCGAAACCAAAACCTCAATATCATGTATCCTATTGAGAAGAAC-ATGTTTAT
836 A-ATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAG-ACTATGTTTAT
* * * * *
81926 GGTGCCTAAACCTGAAATGAATGGGGATTAGTATAAGTATTCTTGTTTGT
899 GGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGT
* * * * * ** *
81976 CTTATTTAAGAGACAAACTTTTATTCTATCAAAAATGATGGAAAGAAAAG-TGTTTCCAGGGACA
1 CTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAGGAAAAGCT-TTTCTTGAGACA
* * * * * * * * *
82040 CCAAAGCATCAATGTCAAGTATCCTATGGAAGGAAATGTGTTTTAGGTTCCTAATCCTAAAAACA
65 CCAAAGCATCAATGTCATGTATCCTATTGATGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGA
* * * * * *
82105 ATGGAGATTATTGCGAGAATTGATGCTTATCTTATTTAAGGGATGAACTCTGATTTTATAGAAAA
130 ATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAA
* * * *
82170 TAGGGCAAAGAGAAGA-TCTCAATGCAAAAAAAAATCATCAATATCATTTATCGTAATGAGGAGA
195 TAGGGCAAAGAAAAGATTTTCAA-GCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA
* *
82234 ATGTGCTTATTGTGCCTAATCACAAAATGAATGA--A-GATT-CTAGAATCCATGTTTGTCTCAT
259 ATGTGCTTA-TATGCCTAATCACAAAATGAATGACGATCATTACTAGAATCCATGTTTGTCTCAT
* * * *
82295 TTAAGGAACGAACTTAGACTTTTTACAAAAATTGGCGGGAAACATG-CTTTCTTGCGAAACCAAA
323 TTGAGGCATGAACTTAGAC--TTTACAAAAATTGGTGGGAAA-ATGCCTTTCTTGCGAAACCAAA
* * * *
82359 ACCTCAATATCATGTATCCTATTGAGAAGAACATGTTTATGGTGCCTAAACCTGAAATGAATGGG
385 ACATCAATATCATGTATCCTAATGAGAAGAACATGTTTATGGTGCCTAATCCTGAAAAGAATGGG
* * * *
82424 GATTAGTATAAGTATTCTTGTTTGTCTTATTTAAGAGACAAACTTTTATTCTATCAAAAATGATG
450 GATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGATG
*
82489 GAAAGAAAAGCGTTTCCAGGGACACCAAAGCATCAATGTCAAGTATCCTATGGAAGGAAATGTGT
515 GAAAGAAAAGC-TTTCCA-GGACACCAAAGCATCAATGTCATGTATCCTATGGAAGGAAATGTGT
* * * * * * *
82554 TTTAGGTTCCTAATCCTAAAAACAATGGAGATTATTGCGAGAATTGATGCTTATCTTATTTAAGG
578 TTTAGGTTCCTAATCCTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGG
* * * *
82619 GATGAACTCTGATTTTATAGAAAAT-AGGGCAAAGAGAAGATTTCAATGCAAAAAAAAATCATCA
643 GATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCATCA
* * * *
82683 ATATCATTTATCGTAATGAGGAGAATGTGCTTATTGTGCCTAATCACAAAATGAATGAAGATCAT
708 ATATCATTTATCATAATGAGGAGAAAGTGCTTATCGTGCCTAATCACAAAATGAATGACGATCAT
* * * * *
82748 TACTAGAATCCATGTTTGTTTCATTTGAGGTATGCACTTAGGCTTTACAAAAATTGGTGGGTAAA
773 TACTAGAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTACAAAAATTGGTGGG-AAA
*
82813 ATGCCTTTCTTGTGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGT
837 ATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGT
*
82878 GCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTTT
902 GCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGT
* ** * ** *
82925 CTTATTTGAGAGGTAAACTTTGATTCCGTCAGTAACGGTGGAAGGAAAACCTTTTCTTGAGACAC
1 CTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAGGAAAAGCTTTTCTTGAGACAC
*
82990 CAAAGCATCAATTTTC-TGTATCCTATTGATGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGA
66 CAAAGCATCAA-TGTCATGTATCCTATTGATGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGA
* *
83054 ATGGAGACTATTATGAGAATCGATGCTTGTCTTATTTAAGAGATGAACTTTGATTTTATGGAAAA
130 ATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAA
* * * * *
83119 TAAGGGAAAATAAAAGATTTTCAAGCAAAAGAAAATCGTCAATATCATTTATCATAATGAGAAGA
195 T-AGGGCAAAGAAAAGATTTTCAAGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA
* * *
83184 AAGTGCTTATCATGCCTAATCACAAAATGAATGACGATCATTTCTGGAATCCATGTTTGTCTCAT
259 ATGTGCTTAT-ATGCCTAATCACAAAATGAATGACGATCATTACTAGAATCCATGTTTGTCTCAT
*
83249 TTAAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAACATGCCTTTCTTGCGAAACCAAAAC
323 TTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAA-ATGCCTTTCTTGCGAAACCAAAAC
* * ** *
83314 ATCAATATCATGTATCCTATTGAGAAGAACATGTTTATGGTGCCTAAACCTGAAATCAATGGGGG
387 ATCAATATCATGTATCCTAATGAGAAGAACATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGA
* * ** * * *
83379 TTAGTATGAGTCTTCTTGTTCATCTTATTTAAGAGAGAAACTTTTATTCTATCAAAAATGATGGA
452 TTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGA
*
83444 AAGAAAAGCGTTTCCAGGAACACCAAAGCATCAATGTCAAGTATCCTATGGAAGGAAATGTGTTT
517 AAGAAAAGC-TTTCCAGG-ACACCAAAGCATCAATGTCATGTATCCTATGGAAGGAAATGTGTTT
* * * *
83509 TAGGTTCCTAATCCTAAAAACAATGGAGACTGTTGCGAGAATCGATGCTTGTCTTTTTTAAGGGA
580 TAGGTTCCTAATCCTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGA
** * * * *
83574 TGAACTTCAATTTTATAGAAAA-AAGGGCAAAGAAAAGATTTTC-ATGTAAAATAATATCATCAA
645 TGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGA-TTTCAATGCAAAAGAAAATCATCAA
* * * * *
83637 TATCATTTATCCTACTGAGGAGAATGTGCTTATTGTGCCTAATCACAAAATGAATGAAGATCATT
709 TATCATTTATCATAATGAGGAGAAAGTGCTTATCGTGCCTAATCACAAAATGAATGACGATCATT
* * * *
83702 ACTAGAATCCATTTTTTTTTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGTAAAA
774 ACTAGAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTACAAAAATTGGTGGG-AAAA
***
83767 TGCCTTTCTCATGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTG
838 TGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTG
*
83832 CCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGT
903 CCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGT
* * *
83878 CTTATTTAAGAGACAAACTTTGAATCCATAAAAAACGATGGAAGGAAAAGCTTTTCTTGAGACAC
1 CTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAGGAAAAGCTTTTCTTGAGACAC
*
83943 CAAAGCATCAATGTCATGTATCCTATTGATGGGAATGTGTTTTTGATTCCCAATCTTGAAAAGAA
66 CAAAGCATCAATGTCATGTATCCTATTGATGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAA
* *
84008 TGGAGACTATTACGAGAATCGATGCTTGTCTAATTTAAGGAATGAACTTTGATTTTATGGAAAAT
131 TGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAAT
* *
84073 AAGGGCAAAGAAAAGATTTCCAAGCCAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
196 -AGGGCAAAGAAAAGATTTTCAAGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
* * **
84138 TGTGCTTATAATG-CTAAACACAAAATGAGTGAAAATCATTACTAGAATCCATGTTTGTCTCATT
260 TGTGCTTAT-ATGCCTAATCACAAAATGAATGACGATCATTACTAGAATCCATGTTTGTCTCATT
** * *
84202 TGACACACGAACTTAAACTTTACAAAAATTGGTGGGAAAATGCCTTTCTTGCGAAACCAAAACAT
324 TGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAATGCCTTTCTTGCGAAACCAAAACAT
* ** * *
84267 CAATATCATATATCCTAACAAGAAGAACATGTTTATGGTGCCTAATCTTGAAAAGAATAGGGATT
389 CAATATCATGTATCCTAATGAGAAGAACATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATT
* *
84332 AGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAGCAATGGAAA
454 AGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAAA
* * *
84397 GAAATGCATTTCCAGGGACACCAAAGCATTAATGTCATGTATCCTAAGGAAGGAAATGTGTTTTA
519 GAAAAGC-TTTCCA-GGACACCAAAGCATCAATGTCATGTATCCTATGGAAGGAAATGTGTTTTA
* * * * *
84462 GGTTCCTAATCCTAAAAAAAATGGAGACTATTACGAGAATTGTTGCTTGTCTTATTTAAGGGATG
582 GGTTCCTAATCCTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATG
* * * *
84527 AACTTTGATTTTATGGAAAATAAAGGCAAATAAAGGATTTCCAA-GCAAAAGAATATCATCAATA
647 AACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTT-CAATGCAAAAGAAAATCATCAATA
* *
84591 TCATTTATCATAATGAGGAGAAAGTGCTTGTCGCGCCTAATCACAAAATGAATGACGATCATTAC
711 TCATTTATCATAATGAGGAGAAAGTGCTTATCGTGCCTAATCACAAAATGAATGACGATCATTAC
* * *
84656 TGGAATCCATGTTTGTCTCATTTACGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAATTG
776 TAGAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAA-TG
* * *
84721 CCTTTCTTGCGAAACCAAAACTTCAATATTGCGTATCCTAATGGGAAGACTATGTTTATGGTGCC
840 CCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCC
*
84786 TAATCCTGAAAGGAATGGGGATTAGTATGACTATTCATGTTTGT
905 TAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGT
* * * * * * *
84830 CTTTTTTAAGAGTCAAACTTTGATTCCATCAAAAATGGGGGTAA-AAAAAGCTTTCCTTGTGACA
1 CTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGG-AAGGAAAAGCTTTTCTTGAGACA
** * * * ** * *
84894 CCAAAATATCAATGTCATGTATCCTACTGAAGAGAATGTGTTTTTGGCACGCAATCTTGGAAAGA
65 CCAAAGCATCAATGTCATGTATCCTATTGATGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGA
* * *
84959 ATGGAGATTGTTACGAGAATCGATGCTTGTATTATTTAAGGGATGAACATTT-ATTTTAT-GAGA
130 ATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAAC-TTTGATTTTATGGA-A
* * * * *
85022 AATAGGGTAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATACCATTTATCCTAGTGAGGAG
193 AATAGGGCAAAGAAAAGATTTTCAAGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAG
* * *
85087 AATATGCTTATAATGCTTAATCACAAAATGAATGATGATCATTACTAGAATCCATGTTTGTCTCA
258 AATGTGCTTAT-ATGCCTAATCACAAAATGAATGACGATCATTACTAGAATCCATGTTTGTCTCA
* * * *
85152 TTTGAGGCATGAACTTAGACTTTACAAAAATTGGTAAGAAAAATGCTTTTCTTGCAAAACCAAAA
322 TTTGAGGCATGAACTTAGACTTTACAAAAATTGGT-GGGAAAATGCCTTTCTTGCGAAACCAAAA
* ** * *
85217 CATGAATATCACATAACCTAATGAGAAG-ACTAAGTTTATGGTGCCTAATCCTGAAAAGAATGGG
386 CATCAATATCATGTATCCTAATGAGAAGAAC-ATGTTTATGGTGCCTAATCCTGAAAAGAATGGG
* * * ** * * *
85281 GATTAGTATGACTTTTTATGTTTGTCACATTTAAGAGGCAAACTTTGATTCCATCAAAAACGGTG
450 GATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGATG
* * * * * *
85346 GAAGGAAAAGCTTTTCTTCA-GACACCAAAGCATCAATGTCATATATCCTATTGATGGGAAGGTG
515 GAAAGAAAAGC-TTTC--CAGGACACCAAAGCATCAATGTCATGTATCCTATGGAAGGAAATGTG
* * *
85410 TTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTGTTACTAGAATCGATG-TCTGTCTTATTTAA
577 TTTTAGGTTCCTAATCCTGAAAAGAATGGAGACTGTTACGAGAATCGATGCT-TGTCTTATTTAA
* * *
85474 GAGATGAACTTTGATTTTATGGAAAATAAGGGCAAATAAAAGATTTCCAA-GCAAAAGGAAATCA
641 GGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTT-CAATGCAAAAGAAAATCA
* * *
85538 TCAATATCGTTTAACATAATGAGGAGAAAGTGCTTACCGTGCCTAATCACAAAATGAATGACGAT
705 TCAATATCATTTATCATAATGAGGAGAAAGTGCTTATCGTGCCTAATCACAAAATGAATGACGAT
* * *
85603 CATTACTGGAATCCACGTTTGTCTCATTTAAGGCATGAAGTTAGACTTTACAAAAATTGGTGGGA
770 CATTACTAGAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTACAAAAATTGGTGGGA
* * *
85668 AAATTACCTTTCCTGCGAAACCAAAATATCAATATCGCGTATCCTAATGAGAAGACTATGTTTAT
835 AAA-TGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTATGTTTAT
*
85733 GGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGCTTGT
899 GGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGT
* * *
85783 CTCATTTAAGAGACAAACTTTGAATCCATCAAAAACGGTGGAAGGAAAAGCTTTTCTTGAGATAC
1 CTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAGGAAAAGCTTTTCTTGAGACAC
*
85848 CAAAGCATCAATGTCATGTATCCTATTGATGGGAATGTGTTTTTGATTCCCAATCTTGAAAAGAA
66 CAAAGCATCAATGTCATGTATCCTATTGATGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAA
* * * * *
85913 TGGAGATTGTTACGAGAATCGATGCTTGTATTATTTAAGGGATGAACTTTTACTTTATGGAAAAT
131 TGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAAT
* *
85978 AGGGCAAAGAAAAGATTTTCATGCAAAA-AAAATCATAAATATCATTTATCC-AAGTGAGGAGAA
196 AGGGCAAAGAAAAGATTTTCAAGCAAAAGAAAATCATCAATATCATTTATCCTAA-TGAGGAGAA
* * * * * * * *
86041 TGTGCTTATAGCGCCAAATCCCGAAATAAATGACGATTATTACTAGAATCCTTGTTTGCCTCATT
260 TGTGCTTATA-TGCCTAATCACAAAATGAATGACGATCATTACTAGAATCCATGTTTGTCTCATT
* * * **
86106 TAAGGCATGAACTTAGACTTTACAAAAATTGCTGGGAAAAATGCTTTTCTTTTGAAACCAAAACA
324 TGAGGCATGAACTTAGACTTTACAAAAATTGGTGGG-AAAATGCCTTTCTTGCGAAACCAAAACA
* *** *
86171 TCAATATCACGTATCCTAATGAGAAG-ACTATGTTTATGGTGCCTAATCCTGATCGGAAAGGGGA
388 TCAATATCATGTATCCTAATGAGAAGAAC-ATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGA
* * * * * *
86235 TTAGTATGACTATTCATGTTTGTCCTT-TTTAAGAGTCAAACTTTAATTCCATCAAAAATGGTGG
452 TTAGTATGAGTATTCATGTTTGT-CTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGG
* * * *
86299 TAAGACAAGCTTTCCTTATGACACCAAAGCATCAATGTCATGTATCCTACT-GAA-GAGAATGTA
516 AAAGAAAAGCTTTCC--AGGACACCAAAGCATCAATGTCATGTATCCTA-TGGAAGGA-AATGTG
* ** * * * * * * * *
86362 TTTTTGGCACCCAATCTTGGAAAGAATGGGGATTGTTTCGAGAATCAATGCTTGTATTATTTAAG
577 TTTTAGGTTCCTAATCCTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAG
* * * *
86427 GGATGAACTTTTATTTTATGGAAAAT-AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATTATA
642 GGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCATC
* * * * * **
86491 AATTTCATTTATCCA-AGTGAGAAGAATGTGCTTATAGCACCTAATCACAAAATGAATGACGATC
707 AATATCATTTAT-CATAATGAGGAGAAAGTGCTTATCGTGCCTAATCACAAAATGAATGACGATC
* *
86555 ATTACTAGAATCCATGTTTGCCTCATTTAAGACATGAACTTAGACTTTACAAAAATTGGTGGGAA
771 ATTACTAGAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTACAAAAATTGGTGGG-A
* * * * *
86620 AAATGCTTTTCTTTCGAAACCAAAACATCAATATCACGTATCCTAATGCGAAGACTAAGTTTATG
835 AAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATG
* * *
86685 GTGCATAATCCTGAAAAGAAT-GGGATTAGTATGACTTTTCATGTTTAT
900 GTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGT
* * * * * *
86733 CTTATTTAAAAGAAAAACTTTGATTCCATAAAAAATGGTGAAAGGAAAAGCTTTTCTTGCGACAC
1 CTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAGGAAAAGCTTTTCTTGAGACAC
* *
86798 CAAAGCATCAATGTCATGTATCCTATTAATGGGAATGTGTTTTTGGTTCCCATTCTTGAAAAGAA
66 CAAAGCATCAATGTCATGTATCCTATTGATGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAA
* * * *
86863 TGAAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTCTGATGTTATGAAAAAT
131 TGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAAT
* * *
86928 AAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATCTCATTTATCCTAGTGAGGAGAA
196 -AGGGCAAAGAAAAGATTTTCAAGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
* * * *
86993 AGTGCTTGTAGCGCCTAATCACAAAATGAATGACTATCATTACTAGAATCCATGTTTGTCTCATT
260 TGTGCTTATA-TGCCTAATCACAAAATGAATGACGATCATTACTAGAATCCATGTTTGTCTCATT
* * *
87058 TGAGGCAAGAACTTAGACTTTACAAAAATTGGTGGGAAAATGGCTTTCTTGC-AAAGCCAAAGCA
324 TGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAATGCCTTTCTTGCGAAA-CCAAAACA
* * * * *
87122 TTAATATCGTGTATCCTATTGAGAAGAGCATGTTTATGGTGCCTAAACCTGAAAAGAATGGGGAT
388 TCAATATCATGTATCCTAATGAGAAGAACATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGAT
* * * * *
87187 TAGTATGGGTATTCATGTTTGTCTCATTTAAGAGATAAACTTTGATTCTATGAAAAAAGATGGAA
453 TAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAA
* * ** *
87252 AGAAAAGCATTGCCAAGGACACCAAAGCATCAATATCATGTATCCTAAAGAAGGAAATATGTTTT
518 AGAAAAGC-TTTCC-AGGACACCAAAGCATCAATGTCATGTATCCTATGGAAGGAAATGTGTTTT
* * * * *
87317 AGGTTCCCAATCCTGAAAAGAATGGAGACAGTTAAGAGAATCGATGCTTGTCCTATTTAAAGGAT
581 AGGTTCCTAATCCTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGAT
87382 GAACTT
646 GAACTT
87388 AGACTTTACA
Statistics
Matches: 4766, Mismatches: 580, Indels: 135
0.87 0.11 0.02
Matches are distributed among these distances:
948 22 0.00
949 259 0.05
950 447 0.09
951 1097 0.23
952 1123 0.24
953 1515 0.32
954 301 0.06
955 2 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (948 bp):
CTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAGGAAAAGCTTTTCTTGAGACAC
CAAAGCATCAATGTCATGTATCCTATTGATGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAA
TGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAAT
AGGGCAAAGAAAAGATTTTCAAGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
GTGCTTATATGCCTAATCACAAAATGAATGACGATCATTACTAGAATCCATGTTTGTCTCATTTG
AGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAATGCCTTTCTTGCGAAACCAAAACATCA
ATATCATGTATCCTAATGAGAAGAACATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAG
TATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAAAGA
AAAGCTTTCCAGGACACCAAAGCATCAATGTCATGTATCCTATGGAAGGAAATGTGTTTTAGGTT
CCTAATCCTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACT
TTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCATCAATATCATT
TATCATAATGAGGAGAAAGTGCTTATCGTGCCTAATCACAAAATGAATGACGATCATTACTAGAA
TCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAATGCCTTTC
TTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCC
TGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGT
Found at i:83816 original size:476 final size:473
Alignment explanation
Indices: 81022--87387 Score: 7780
Period size: 476 Copynumber: 13.4 Consensus size: 473
81012 TGATGCTTAA
* * *
81022 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCATTTCTAGTGACAC
1 CTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGATGGAAAGAAAAGC-TTTCCAG-GACAC
* * * * * * * **
81087 CAAAACAACAATGTCACGTATCCTACTGAAGGAAATGTGTTTTAGGTTCCCAATCCTAAAAACTA
64 CAAAGCATCAATGTCATGTATCCTATTGAAGGAAATGTGTTTTTGGTTCCCAATCTTGAAAAGAA
* ** * *
81152 TGGAGACTGTTACAAGAATCGATGCTTGTCTTAAGTAAGGGATGAACTTCGATTTTAT-AAAAAA
129 TGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAAA
* * * * * *
81216 TAGAGCAAAGAAAAG-TTTTCCCTACCAAATAAAATCATCAATATCATTTATCGTAATGAGGAGA
194 -AGGGCAAAGAAAAGATTTT-CATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA
* * *
81280 ATGTGCTTATTGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTTTCAT
257 ATGTGCTTATAGTGCCTAATCACAAAATGAATGACGATCATTACTAGAATCCATGTTTGTCTCAT
* * *
81345 TTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGTAAAATGCTTTTCTTGCGAAACCAAAAC
322 TTAAGGCATGAACTTAGACTTTACAAAAATTGGTGGG-AAAATGCCTTTCTTGTGAAACCAAAAC
* * * * * *
81410 ATCAATATCGCGTATCGTAATGAGAAGACTATGTTTTTGGCGCCTAATCTTGAAAAGGATGGGGA
386 ATCAATATCACGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGA
*
81475 TTAGTATGATTATTCATGTTTGT
451 TTAGTATGACTATTCATGTTTGT
* * * * **
81498 CTTATTTAAGAGACAAACTTTGATTCCGTCAATAACGATGGAAGGAAAAGCTTTTCTTGAGACAC
1 CTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGATGGAAAGAAAAGC-TTTCCAG-GACAC
* *
81563 CAAAGCATCAATGTCATGTATCCTATTGATGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAA
64 CAAAGCATCAATGTCATGTATCCTATTGAAGGAAATGTGTTTTTGGTTCCCAATCTTGAAAAGAA
* *
81628 TGGAGACTGTTACGAGAATTGATGCTTGTCTTATTTAAGAGATGAACTTTGATTTTATGGAAAAT
129 TGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAA-
* * * * *
81693 AAGGGCAAATAAAAGATTTTCAGGCAAAAGAAAACCGTCAATATCATTTATCATAATGAGGAGAA
193 AAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
* * * *
81758 AGTGCTTATCA-TGCCTAATCACAAAATGAATGCCGATCATTACTGGAATCTATGTTTGTCTCAT
258 TGTGCTTAT-AGTGCCTAATCACAAAATGAATGACGATCATTACTAGAATCCATGTTTGTCTCAT
* * * *
81822 TTAAGGAACGAACTTAGACTTTTTACAAAAATTGGCGGGAAACATG-CTTTCTTGCGAAACCAAA
322 TTAAGGCATGAACTTAGAC--TTTACAAAAATTGGTGGGAAA-ATGCCTTTCTTGTGAAACCAAA
* * * * *
81886 ACCTCAATATCATGTATCCTATTGAGAAGAAC-ATGTTTATGGTGCCTAAACCTGAAATGAATGG
384 ACATCAATATCACGTATCCTAATGAGAAG-ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGG
* * *
81950 GGATTAGTATAAGTATTCTTGTTTGT
448 GGATTAGTATGACTATTCATGTTTGT
* * *
81976 CTTATTTAAGAGACAAACTTTTATTCTATCAAAAATGATGGAAAGAAAAGTGTTTCCAGGGACAC
1 CTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGATGGAAAGAAAAG-CTTTCCA-GGACAC
* * * * * * *
82041 CAAAGCATCAATGTCAAGTATCCTATGGAAGGAAATGTGTTTTAGGTTCCTAATCCTAAAAACAA
64 CAAAGCATCAATGTCATGTATCCTATTGAAGGAAATGTGTTTTTGGTTCCCAATCTTGAAAAGAA
* * * * * * * *
82106 TGGAGATTATTGCGAGAATTGATGCTTATCTTATTTAAGGGATGAACTCTGATTTTATAGAAAAT
129 TGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAAA
* * * *
82171 AGGGCAAAGAGAAGA-TCTCAATGCAAAAAAAAATCATCAATATCATTTATCGTAATGAGGAGAA
194 AGGGCAAAGAAAAGATTTTC-ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
* *
82235 TGTGCTTATTGTGCCTAATCACAAAATGAATGA--A-GATT-CTAGAATCCATGTTTGTCTCATT
258 TGTGCTTATAGTGCCTAATCACAAAATGAATGACGATCATTACTAGAATCCATGTTTGTCTCATT
* * * *
82296 TAAGGAACGAACTTAGACTTTTTACAAAAATTGGCGGGAAACATG-CTTTCTTGCGAAACCAAAA
323 TAAGGCATGAACTTAGAC--TTTACAAAAATTGGTGGGAAA-ATGCCTTTCTTGTGAAACCAAAA
* * * * *
82360 CCTCAATATCATGTATCCTATTGAGAAGAAC-ATGTTTATGGTGCCTAAACCTGAAATGAATGGG
385 CATCAATATCACGTATCCTAATGAGAAG-ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGG
* * *
82424 GATTAGTATAAGTATTCTTGTTTGT
449 GATTAGTATGACTATTCATGTTTGT
* *
82449 CTTATTTAAGAGACAAACTTTTATTCTATCAAAAATGATGGAAAGAAAAGCGTTTCCAGGGACAC
1 CTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGATGGAAAGAAAAGC-TTTCCA-GGACAC
* * * * * * *
82514 CAAAGCATCAATGTCAAGTATCCTATGGAAGGAAATGTGTTTTAGGTTCCTAATCCTAAAAACAA
64 CAAAGCATCAATGTCATGTATCCTATTGAAGGAAATGTGTTTTTGGTTCCCAATCTTGAAAAGAA
* * * * * * * *
82579 TGGAGATTATTGCGAGAATTGATGCTTATCTTATTTAAGGGATGAACTCTGATTTTATAGAAAAT
129 TGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAAA
* * *
82644 AGGGCAAAGAGAAGA-TTTCAATGCAAAAAAAAATCATCAATATCATTTATCGTAATGAGGAGAA
194 AGGGCAAAGAAAAGATTTTC-ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
* * *
82708 TGTGCTTATTGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTTTCATT
258 TGTGCTTATAGTGCCTAATCACAAAATGAATGACGATCATTACTAGAATCCATGTTTGTCTCATT
* * * *
82773 TGAGGTATGCACTTAGGCTTTACAAAAATTGGTGGGTAAAATGCCTTTCTTGTGAAACCAAAACA
323 TAAGGCATGAACTTAGACTTTACAAAAATTGGTGGG-AAAATGCCTTTCTTGTGAAACCAAAACA
*
82838 TCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGAT
387 TCAATATCACGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGAT
*
82903 TAGTATGACTATTCATGTTTTT
452 TAGTATGACTATTCATGTTTGT
* ** * ** * * * * **
82925 CTTATTTGAGAGGTAAACTTTGATTCCGTCAGTAACGGTGGAAGGAAAACCTTTTCTTGAGACAC
1 CTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGATGGAAAGAAAAGC-TTTCCAG-GACAC
* * *
82990 CAAAGCATCAATTTTC-TGTATCCTATTGATGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGA
64 CAAAGCATCAA-TGTCATGTATCCTATTGAAGGAAATGTGTTTTTGGTTCCCAATCTTGAAAAGA
* * *
83054 ATGGAGACTATTATGAGAATCGATGCTTGTCTTATTTAAGAGATGAACTTTGATTTTATGGAAAA
128 ATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAA
* * * * * *
83119 TAAGGGAAAATAAAAGATTTTCAAGCAAAAGAAAATCGTCAATATCATTTATCATAATGAGAAGA
193 -AAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA
* * *
83184 AAGTGCTTATCA-TGCCTAATCACAAAATGAATGACGATCATTTCTGGAATCCATGTTTGTCTCA
257 ATGTGCTTAT-AGTGCCTAATCACAAAATGAATGACGATCATTACTAGAATCCATGTTTGTCTCA
*
83248 TTTAAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAACATGCCTTTCTTGCGAAACCAAAA
321 TTTAAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAA-ATGCCTTTCTTGTGAAACCAAAA
* * * **
83313 CATCAATATCATGTATCCTATTGAGAAGAAC-ATGTTTATGGTGCCTAAACCTGAAATCAATGGG
385 CATCAATATCACGTATCCTAATGAGAAG-ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGG
* * * * **
83377 GGTTAGTATGAGTCTTCTTGTTCAT
449 GATTAGTATGACTATTCATGTTTGT
* * *
83402 CTTATTTAAGAGAGAAACTTTTATTCTATCAAAAATGATGGAAAGAAAAGCGTTTCCAGGAACAC
1 CTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGATGGAAAGAAAAGC-TTTCCAGG-ACAC
* * * * * * *
83467 CAAAGCATCAATGTCAAGTATCCTATGGAAGGAAATGTGTTTTAGGTTCCTAATCCTAAAAACAA
64 CAAAGCATCAATGTCATGTATCCTATTGAAGGAAATGTGTTTTTGGTTCCCAATCTTGAAAAGAA
* * ** *
83532 TGGAGACTGTTGCGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTCAATTTTATAGAAAAA
129 TGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAAA
* * * *
83597 AGGGCAAAGAAAAGATTTTCATGTAAAATAATATCATCAATATCATTTATCCTACTGAGGAGAAT
194 AGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
* * * * *
83662 GTGCTTATTGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATTTTTTTTTCATTT
259 GTGCTTATAGTGCCTAATCACAAAATGAATGACGATCATTACTAGAATCCATGTTTGTCTCATTT
* **
83727 GAGGCATGAACTTAGACTTTACAAAAATTGGTGGGTAAAATGCCTTTCTCATGAAACCAAAACAT
324 AAGGCATGAACTTAGACTTTACAAAAATTGGTGGG-AAAATGCCTTTCTTGTGAAACCAAAACAT
*
83792 CAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATT
388 CAATATCACGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATT
*
83857 AGTATGAGTATTCATGTTTGT
453 AGTATGACTATTCATGTTTGT
* * * * **
83878 CTTATTTAAGAGACAAACTTTGAATCCATAAAAAACGATGGAAGGAAAAGCTTTTCTTGAGACAC
1 CTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGATGGAAAGAAAAGC-TTTCCAG-GACAC
* * *
83943 CAAAGCATCAATGTCATGTATCCTATTGATGGGAATGTGTTTTTGATTCCCAATCTTGAAAAGAA
64 CAAAGCATCAATGTCATGTATCCTATTGAAGGAAATGTGTTTTTGGTTCCCAATCTTGAAAAGAA
* * *
84008 TGGAGACTATTACGAGAATCGATGCTTGTCTAATTTAAGGAATGAACTTTGATTTTATGGAAAAT
129 TGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAA-
* * *
84073 AAGGGCAAAGAAAAGATTTCCAAGCCAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
193 AAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
* * * **
84138 TGTGCTTATAATG-CTAAACACAAAATGAGTGAAAATCATTACTAGAATCCATGTTTGTCTCATT
258 TGTGCTTATAGTGCCTAATCACAAAATGAATGACGATCATTACTAGAATCCATGTTTGTCTCATT
* ** * * *
84202 TGACACACGAACTTAAACTTTACAAAAATTGGTGGGAAAATGCCTTTCTTGCGAAACCAAAACAT
323 TAAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAATGCCTTTCTTGTGAAACCAAAACAT
** ** * *
84267 CAATATCATATATCCTAACAAGAAGAAC-ATGTTTATGGTGCCTAATCTTGAAAAGAATAGGGAT
388 CAATATCACGTATCCTAATGAGAAG-ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGAT
*
84331 TAGTATGAGTATTCATGTTTGT
452 TAGTATGACTATTCATGTTTGT
* *** *
84353 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAGCAATGGAAAGAAATGCATTTCCAGGGACAC
1 CTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGATGGAAAGAAAAGC-TTTCCA-GGACAC
* ** * * * * *
84418 CAAAGCATTAATGTCATGTATCCTAAGGAAGGAAATGTGTTTTAGGTTCCTAATCCTAAAAAAAA
64 CAAAGCATCAATGTCATGTATCCTATTGAAGGAAATGTGTTTTTGGTTCCCAATCTTGAAAAGAA
* * *
84483 TGGAGACTATTACGAGAATTGTTGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAAT
129 TGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAA-
* * * * * * *
84548 AAAGGCAAATAAAGGATTTCCAAGCAAAAGAATATCATCAATATCATTTATCATAATGAGGAGAA
193 AAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
* * * * *
84613 AGTGCTTGTCGCGCCTAATCACAAAATGAATGACGATCATTACTGGAATCCATGTTTGTCTCATT
258 TGTGCTTATAGTGCCTAATCACAAAATGAATGACGATCATTACTAGAATCCATGTTTGTCTCATT
* * * *
84678 TACGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAATTGCCTTTCTTGCGAAACCAAAACT
323 TAAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAA-TGCCTTTCTTGTGAAACCAAAACA
** * *
84743 TCAATATTGCGTATCCTAATGGGAAGACTATGTTTATGGTGCCTAATCCTGAAAGGAATGGGGAT
387 TCAATATCACGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGAT
84808 TAGTATGACTATTCATGTTTGT
452 TAGTATGACTATTCATGTTTGT
* * ** *
84830 CTTTTTTAAGAGTCAAACTTTGATTCCATCAAAAATGGGGGTAAA-AAAAGCTTTCCTTGTGACA
1 CTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGATGG-AAAGAAAAGCTTTCC-AG-GACA
** * ** * *
84894 CCAAAATATCAATGTCATGTATCCTACTGAA-GAGAATGTGTTTTTGGCACGCAATCTTGGAAAG
63 CCAAAGCATCAATGTCATGTATCCTATTGAAGGA-AATGTGTTTTTGGTTCCCAATCTTGAAAAG
* *
84958 AATGGAGATTGTTACGAGAATCGATGCTTGTATTATTTAAGGGATGAACATTT-ATTTTAT-GAG
127 AATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAAC-TTTGATTTTATGGA-
* * * * *
85021 AAATAGGGTAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATACCATTTATCCTAGTGAGGA
190 AAAAAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGA
* * * *
85086 GAATATGCTTATAATGCTTAATCACAAAATGAATGATGATCATTACTAGAATCCATGTTTGTCTC
255 GAATGTGCTTATAGTGCCTAATCACAAAATGAATGACGATCATTACTAGAATCCATGTTTGTCTC
* * * * **
85151 ATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTAAGAAAAATGCTTTTCTTGCAAAACCAAA
320 ATTTAAGGCATGAACTTAGACTTTACAAAAATTGGT-GGGAAAATGCCTTTCTTGTGAAACCAAA
* * * *
85216 ACATGAATATCACATAACCTAATGAGAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATGGG
384 ACATCAATATCACGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGG
* *
85281 GATTAGTATGACTTTTTATGTTTGT
449 GATTAGTATGACTATTCATGTTTGT
** * * * *
85306 CACATTTAAGAGGCAAACTTTGATTCCATCAAAAACGGTGGAAGGAAAAGCTTTTCTTCA-GACA
1 CTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGATGGAAAGAAAAGC-TTTC--CAGGACA
* * * * *
85370 CCAAAGCATCAATGTCATATATCCTATTGATGGGAAGGTGTTTTTGGTTCCTAATCTTGAAAAGA
63 CCAAAGCATCAATGTCATGTATCCTATTGAAGGAAATGTGTTTTTGGTTCCCAATCTTGAAAAGA
* *
85435 ATGGAGACTGTTACTAGAATCGATG-TCTGTCTTATTTAAGAGATGAACTTTGATTTTATGGAAA
128 ATGGAGACTGTTACGAGAATCGATGCT-TGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAA
* * * * * * *
85499 ATAAGGGCAAATAAAAGATTTCCAAGCAAAAGGAAATCATCAATATCGTTTAACATAATGAGGAG
192 A-AAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAG
* ** * *
85564 AAAGTGCTTACCGTGCCTAATCACAAAATGAATGACGATCATTACTGGAATCCACGTTTGTCTCA
256 AATGTGCTTATAGTGCCTAATCACAAAATGAATGACGATCATTACTAGAATCCATGTTTGTCTCA
* * * *
85629 TTTAAGGCATGAAGTTAGACTTTACAAAAATTGGTGGGAAAATTACCTTTCCTGCGAAACCAAAA
321 TTTAAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAA-TGCCTTTCTTGTGAAACCAAAA
* *
85694 TATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGG
385 CATCAATATCACGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGG
*
85759 ATTAGTATGACTATTCATGCTTGT
450 ATTAGTATGACTATTCATGTTTGT
* * * * * ** *
85783 CTCATTTAAGAGACAAACTTTGAATCCATCAAAAACGGTGGAAGGAAAAGCTTTTCTTGAGATAC
1 CTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGATGGAAAGAAAAGC-TTTCCAG-GACAC
* * *
85848 CAAAGCATCAATGTCATGTATCCTATTGATGGGAATGTGTTTTTGATTCCCAATCTTGAAAAGAA
64 CAAAGCATCAATGTCATGTATCCTATTGAAGGAAATGTGTTTTTGGTTCCCAATCTTGAAAAGAA
* * * * *
85913 TGGAGATTGTTACGAGAATCGATGCTTGTATTATTTAAGGGATGAACTTTTACTTTATGGAAAAT
129 TGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAAA
*
85978 AGGGCAAAGAAAAGATTTTCATGCAAAA-AAAATCATAAATATCATTTATCC-AAGTGAGGAGAA
194 AGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAA-TGAGGAGAA
* * * * * * * *
86041 TGTGCTTATAGCGCCAAATCCCGAAATAAATGACGATTATTACTAGAATCCTTGTTTGCCTCATT
258 TGTGCTTATAGTGCCTAATCACAAAATGAATGACGATCATTACTAGAATCCATGTTTGTCTCATT
* * *
86106 TAAGGCATGAACTTAGACTTTACAAAAATTGCTGGGAAAAATGCTTTTCTTTTGAAACCAAAACA
323 TAAGGCATGAACTTAGACTTTACAAAAATTGGTGGG-AAAATGCCTTTCTTGTGAAACCAAAACA
*** *
86171 TCAATATCACGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGATCGGAAAGGGGAT
387 TCAATATCACGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGAT
86236 TAGTATGACTATTCATGTTTGT
452 TAGTATGACTATTCATGTTTGT
* * * * * *
86258 CCTT-TTTAAGAGTCAAACTTTAATTCCATCAAAAATGGTGGTAAGACAAGCTTTCCTTATGACA
1 -CTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGATGGAAAGAAAAGCTTTCC--AGGACA
* * ** *
86322 CCAAAGCATCAATGTCATGTATCCTACTGAA-GAGAATGTATTTTTGGCACCCAATCTTGGAAAG
63 CCAAAGCATCAATGTCATGTATCCTATTGAAGGA-AATGTGTTTTTGGTTCCCAATCTTGAAAAG
* * * * * *
86386 AATGGGGATTGTTTCGAGAATCAATGCTTGTATTATTTAAGGGATGAACTTTTATTTTATGGAAA
127 AATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAA
* * * * * *
86451 ATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATTATAAATTTCATTTATCC-AAGTGAGAAG
192 AAAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAA-TGAGGAG
** *
86515 AATGTGCTTATAGCACCTAATCACAAAATGAATGACGATCATTACTAGAATCCATGTTTGCCTCA
256 AATGTGCTTATAGTGCCTAATCACAAAATGAATGACGATCATTACTAGAATCCATGTTTGTCTCA
* *
86580 TTTAAGACATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCTTTTCTT-TCGAAACCAAA
321 TTTAAGGCATGAACTTAGACTTTACAAAAATTGGTGGG-AAAATGCCTTTCTTGT-GAAACCAAA
* * *
86644 ACATCAATATCACGTATCCTAATGCGAAGACTAAGTTTATGGTGCATAATCCTGAAAAGAAT-GG
384 ACATCAATATCACGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGG
* *
86708 GATTAGTATGACTTTTCATGTTTAT
449 GATTAGTATGACTATTCATGTTTGT
* * * * **
86733 CTTATTTAAAAGAAAAACTTTGATTCCATAAAAAATGGT-GAAAGGAAAAGCTTTTCTTGCGACA
1 CTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGATGGAAA-GAAAAGC-TTTCCAG-GACA
* *
86797 CCAAAGCATCAATGTCATGTATCCTATT-AATGGGAATGTGTTTTTGGTTCCCATTCTTGAAAAG
63 CCAAAGCATCAATGTCATGTATCCTATTGAA-GGAAATGTGTTTTTGGTTCCCAATCTTGAAAAG
* * * * *
86861 AATGAAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTCTGATGTTATGAAAA
127 AATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAA
* *
86926 ATAAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATCTCATTTATCCTAGTGAGGAG
192 A-AAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAG
* * * *
86991 AAAGTGCTTGTAGCGCCTAATCACAAAATGAATGACTATCATTACTAGAATCCATGTTTGTCTCA
256 AATGTGCTTATAGTGCCTAATCACAAAATGAATGACGATCATTACTAGAATCCATGTTTGTCTCA
* * * * *
87056 TTTGAGGCAAGAACTTAGACTTTACAAAAATTGGTGGGAAAATGGCTTTCTTG-CAAAGCCAAAG
321 TTTAAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAATGCCTTTCTTGTGAAA-CCAAAA
* ** * *
87120 CATTAATATCGTGTATCCTATTGAGAAGAGC-ATGTTTATGGTGCCTAAACCTGAAAAGAATGGG
385 CATCAATATCACGTATCCTAATGAGAAGA-CTATGTTTATGGTGCCTAATCCTGAAAAGAATGGG
**
87184 GATTAGTATGGGTATTCATGTTTGT
449 GATTAGTATGACTATTCATGTTTGT
* * * * * *
87209 CTCATTTAAGAGATAAACTTTGATTCTATGAAAAAAGATGGAAAGAAAAGCATTGCCAAGGACAC
1 CTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGATGGAAAGAAAAGC-TTTCC-AGGACAC
* ** * * *
87274 CAAAGCATCAATATCATGTATCCTAAAGAAGGAAATATGTTTTAGGTTCCCAATCCTGAAAAGAA
64 CAAAGCATCAATGTCATGTATCCTATTGAAGGAAATGTGTTTTTGGTTCCCAATCTTGAAAAGAA
* * * *
87339 TGGAGACAGTTAAGAGAATCGATGCTTGTCCTATTTAAAGGATGAACTT
129 TGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTT
87388 AGACTTTACA
Statistics
Matches: 5129, Mismatches: 679, Indels: 164
0.86 0.11 0.03
Matches are distributed among these distances:
473 463 0.09
474 21 0.00
475 1010 0.20
476 1952 0.38
477 1382 0.27
478 277 0.05
479 24 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (473 bp):
CTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGATGGAAAGAAAAGCTTTCCAGGACACCA
AAGCATCAATGTCATGTATCCTATTGAAGGAAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATG
GAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAAAAG
GGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
GCTTATAGTGCCTAATCACAAAATGAATGACGATCATTACTAGAATCCATGTTTGTCTCATTTAA
GGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAATGCCTTTCTTGTGAAACCAAAACATCAA
TATCACGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGT
ATGACTATTCATGTTTGT
Found at i:92381 original size:18 final size:18
Alignment explanation
Indices: 92358--92422 Score: 51
Period size: 18 Copynumber: 3.3 Consensus size: 18
92348 ATCTTCTTCT
92358 CTCCTCCTCCTATCATCC
1 CTCCTCCTCCTATCATCC
*
92376 CTCCT-CTCTCTATTATCTCTC
1 CTCCTCCTC-CTATCA--TC-C
92397 CTGTCTCTCCTCCTATCATCC
1 C--TC-CTCCTCCTATCATCC
92418 CTCCT
1 CTCCT
92423 ATCTCTACTA
Statistics
Matches: 37, Mismatches: 2, Indels: 16
0.67 0.04 0.29
Matches are distributed among these distances:
17 3 0.08
18 12 0.32
19 2 0.05
20 2 0.05
21 4 0.11
22 2 0.05
23 2 0.05
24 7 0.19
25 3 0.08
ACGTcount: A:0.09, C:0.49, G:0.02, T:0.40
Consensus pattern (18 bp):
CTCCTCCTCCTATCATCC
Found at i:92413 original size:42 final size:42
Alignment explanation
Indices: 92361--92479 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
92351 TTCTTCTCTC
*
92361 CTCCTCCTATCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
92403 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCTTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
92445 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
92480 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.09, C:0.45, G:0.02, T:0.44
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:96286 original size:474 final size:474
Alignment explanation
Indices: 95076--97377 Score: 2923
Period size: 473 Copynumber: 4.9 Consensus size: 474
95066 CTTGCGACAC
* * * **
95076 CTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGTAAAGATTTCCATGCAATTG
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAG
* * *
95141 AAAATCATCAGTATCATTTCTCCTAATGAGGAATGTGTTTATAGTGCCTAATCACAAAATGATTG
66 AAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAATCACAAAATGAATG
*
95206 AAGATCATTACTAGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGTCTTTACAAAAATTGG
131 AAGATCATTACTAGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAAATTGG
** * * * *
95271 TGGGAAAAGGGCCTTTCTTGCGAAGCCAAAACTTCAATATCGCATATCCTAAAGGGAAGACTATG
196 TGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCATATCCTAATGAGAAGACTATG
* * * * * *
95336 TTTATGGTGCCTAATCCTAAAAATAATGGGGGTTAGTTTGACCATTCATGTCTGTCTTATTCT--
261 TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATT-TAA
* * * *
95399 TAGACAAACTTTGATTCCATCAAAAAGGGTGAAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
325 GAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
* * *
95464 AATGTCATGTATCCT-ATAGAAGGGAATGTGTTTTTGATACCAAATCTTGAAAAGAATGTAGATT
390 AATGTCATGTATCCTAAT-GAAGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGATT
*
95528 -CTTACAAGAATCGATGCTTGT
454 GC-TACGAGAATCGATGCTTGT
* * ***
95549 CTTATTTAAGGGATGAACTCTGATTTTAGGGAAAATAAGGCAAAGAAAAGATTTTCGCACAAAAG
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAG
*
95614 AAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAATCACAAAACGAATG
66 AAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAATCACAAAATGAATG
* * *
95679 AAGATCATTGCTAGAATCCAAGTTTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAAACTGG
131 AAGATCATTACTAGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAAATTGG
* * * * * ***
95744 CGGGAAAAATGCCTTTCTAGCGAAACTAAAGCATCATTATCATGTATCCTAATGAGAAGAAC-AT
196 TGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCATATCCTAATGAGAAG-ACTAT
* * **
95808 GTTTACGGTGCCTAATCCAGAAAAGAATATGGATTAGTATGACTATTCATGTTTGTCTTATTTAA
260 GTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAA
* * * *
95873 GAGACAAACATTGATTCTATCAAAAATGATGTAAAGAAAAGCTTTTCATGCGACACCAAAGCATC
325 GAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
* * * * * * * * *
95938 AATGTCAAGTATCCTAATGAAGGAAATATGTTTTAGGTTCCTAATCCT-AACAATG-ATGGTGAC
390 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTACCCAATCTTGAA-AA-GAATGGAGAT
* **
96001 TGCTACGAGAATCGTTGCCCGT
453 TGCTACGAGAATCGATGCTTGT
* *
96023 CTT-TTTAAGGGATGAACTTTGATTATAAGGAAAATAAGGCAAAGAAAAGATTTTCATGTAGAAA
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCA-AAA
* * * * * ** * *
96087 -AAAATCATCAATATCATTTATCCTAGTAAGGAGAATTTGCTTCTAGCACCTAATCATAAAATTA
65 GAAAATCATCAATATCATTTCTCCTAATGA-G-GAATGTGCTTATAGTGCCTAATCACAAAATGA
* * * * * *
96151 ATGACGATCATTAGTAGAATCCATGTTTGTCTCATTTAAGGCACGAACATAGACTTTACAAAAAT
128 ATGAAGATCATTACTAGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAAAT
* *
96216 TGGTGGGAAAATTGCCTTTC-TGAGAAACCAAAACATCAATATCGCATATCCTAATGAGAAGACT
193 TGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCATATCCTAATGAGAAGACT
* *
96280 ATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTTGTATGACTATTTATGTTTGTC-TATTT
258 ATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTT
* * * *
96344 AAGAGACAAACTTTGATTCCATTAAAAATGGTGGAAAGAAAAGCTGTTCTTGCGACACTAAAGCA
323 AAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
* * * * *
96409 TCAATGTCATGTATCCTATTGAAGGGAATGTGCTTTTGGTACCCAAACATGGAAAGAATGGAGAT
388 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGAT
* **
96474 TGTTACGAGAATCGGGGCTTGT
453 TGCTACGAGAATCGATGCTTGT
* * * **
96496 CTTTTTTAAGGGATGAACTTTGATTTTAAGGGAAATAGAGGC-AAGAAAAGATTTTGACACAAAA
1 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATA-AGGCAAAGAAAAGATTTTCATGCAAAA
* *
96560 GAAAATCATCAATATCATTTCTCCGAATGAGGAGAATGTGCATATAGTGCCTAATCACAAAATGA
65 GAAAATCATCAATATCATTTCTCCTAATGA-G-GAATGTGCTTATAGTGCCTAATCACAAAATGA
* * *
96625 ATGAAGATCATTACTAGAATCCATGTTTATCTCATTTGAGGAATGAACTTAGACTTTACAAAAAT
128 ATGAAGATCATTACTAGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAAAT
* *
96690 TGGTGGG-AAAATGCTTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACT
193 TGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCATATCCTAATGAGAAGACT
* * * * * * *
96754 AAGTTCATGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATTAGTATTCATGTTTGTCCTCTTT
258 ATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTT
* * * * *
96819 AAGAGAGAAACTTTGATTCTATCAAAAACGG-GGGAAGAAAA-ATTTTCTTGTGACACCAAAGCA
323 AAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
* *
96882 TCATTGTCATGTATCCTATTGAAGGG-ATGGTGTTTTTGGCT-CCCAATCTTGAAAAGAATGGAG
388 TCAATGTCATGTATCCTAATGAAGGGAAT-GTGTTTTTGG-TACCCAATCTTGAAAAGAATGGAG
* *
96945 ATTGTTACGAGAATTGATGCTTGT
451 ATTGCTACGAGAATCGATGCTTGT
* ** *
96969 CTTATTT-AGGAGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGAGATCCATGCAAAA
1 CTTATTTAAGG-GATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAA
* * * * * * *
97033 GAAAATCATCTATATCGTTTCTCCTAATGAGGAATATGCTTACAGAGCCTAATCAAAAAATAAAT
65 GAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAATCACAAAATGAAT
* * * * * *
97098 GAAGATTATTACTAGAATCCATGTTTGTCCTATTTGGGGCATGAACTTAGACTTTGCAAAAGTTA
130 GAAGATCATTACTAGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAAATTG
* * * * *
97163 GTGGGAAAAAGGCCTTTCATGCGAAACCAAAACATCAATATTGCAGATCTTAATGAGAAGACTAT
195 GTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCATATCCTAATGAGAAGACTAT
**
97228 GTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAAAATGACTATTCATGTTTGTCTTATTTAA
260 GTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAA
* * * *
97293 TAGACAAACTTTGATT-TCATAAAAAATGGTGGAAAGGAAAGCTTTTCTTGCGTCACCAAAGCAT
325 GAGACAAACTTTGATTCT-ATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAT
*
97357 CAATGTCGTGTATCCTAATGA
389 CAATGTCATGTATCCTAATGA
97378 GAAGACTAAG
Statistics
Matches: 1564, Mismatches: 239, Indels: 51
0.84 0.13 0.03
Matches are distributed among these distances:
471 90 0.06
472 143 0.09
473 673 0.43
474 520 0.33
475 138 0.09
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.31
Consensus pattern (474 bp):
CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAG
AAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAATCACAAAATGAATG
AAGATCATTACTAGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAAATTGG
TGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCATATCCTAATGAGAAGACTATG
TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAG
AGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCA
ATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGATTGC
TACGAGAATCGATGCTTGT
Found at i:96865 original size:157 final size:155
Alignment explanation
Indices: 96239--98925 Score: 594
Period size: 157 Copynumber: 17.1 Consensus size: 155
96229 GCCTTTCTGA
**
96239 GAAACCAAAACATCAATATCGCATATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAA
1 GAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAA
* * * * * *
96304 AAGAATGGGGATTTGTATGACTATTTATGTTTGTC-TATTTAAGAGACAAACTTTGATTCCATTA
66 AAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAGAAACTTTGATT-TATCA
* * *
96368 AAAATGGTGGAAAGAAAAGCTGTTCTTGC
130 AAAA-GG-GGGAAGAAAA-ATTTTCTTGC
* * * * * * * * * * * * *
96397 GACACTAAAGCATCAATGTCATGTATCCTATTGA-AGGGAATGTGCTTT-TGGTACCCAAACATG
1 GAAACCAAAACATCAATATCGTGTATCCTAATGAGA-AGACTATG-TTTATGGTGCCTAATCCTG
* * * * ** * * *
96460 GAAAGAATGGAGATT-GTTACGAG-AATCGGGGCTTGTCTTTTTTAAGGGATG-AACTTTGATTT
64 AAAAGAATGGGGATTAG-TATGAGTATTC-ATGTTTGTCTTATTTAAGAGA-GAAACTTTGATTT
* * * ****
96522 -TAAGGGAAATAGAGGCAAGAAAAGATTTTGACAC
126 ATCA---AAA-AGGGGGAAGAAAA-ATTTTCTTGC
** * * * * * * * ** *
96556 -AAAAGAAAATCATCAATATCATTTCTCCGAATGAGGAGAATGTGCATATAGTGCCTAATCAC--
1 GAAACCAAAA-CATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC-CTG
** * * * * * * * *
96618 AAAATGAATGAAGATCATTACT-AGAATCCATGTTTATCTCATTTGAG-GA-ATGAACTTAGACT
64 AAAA-GAATGGGGATTAGTA-TGAGTATTCATGTTTGTCTTATTTAAGAGAGA--AACTTTGA-T
***
96680 TTA-CAAAAATTGGTGGGAA-AATGCTTTTCTTGC
124 TTATCAAAAA--GG-GGGAAGAAAAATTTTCTTGC
* * * *
96713 GAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTAAGTTCATGGTGCCTTATCCTGAA
1 GAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAA
* * *
96778 AAGAATGGGGATTAGTATTAGTATTCATGTTTGTCCTCTTTAAGAGAGAAACTTTGATTCTATCA
66 AAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAGAAACTTTGATT-TATCA
*
96843 AAAACGGGGGAAGAAAAATTTTCTTGT
130 AAAA-GGGGGAAGAAAAATTTTCTTGC
* * * * * * * * * * *
96870 GACACCAAAGCATCATTGTCATGTATCCTATTGA-AGGGA-TGGTGTTTTTGGCT-CCCAATCTT
1 GAAACCAAAACATCAATATCGTGTATCCTAATGAGA-AGACT-ATGTTTATGG-TGCCTAATCCT
* * * * * *
96932 GAAAAGAATGGAGATT-GTTACGAGAATTGATGCTTGTCTTATTTAGGAGATG-AACTTTGATTT
63 GAAAAGAATGGGGATTAG-TATGAGTATTCATGTTTGTCTTATTTAAGAGA-GAAACTTTGA-TT
* * ** ** * *
96995 TATGGAAAATAAGGCAAAGAAAAGAGATCCATGC
125 TAT-CAAAA-AGGGGGAAGAAAA-ATTTTCTTGC
** * * * * * ** * **
97029 -AAAAGAAAATCATCTATATCGTTTCTCCTAATGAG--GAATATGCTTACAGAGCCTAAT-CAAA
1 GAAACCAAAA-CATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGA
* ** * * * * * * *
97090 AAATAAATGAAGATTATTACT-AGAATCCATGTTTGTCCTATTT-GGGGCATG-AACTTAGACTT
65 AAA-GAATGGGGATTAGTA-TGAGTATTCATGTTTGTCTTATTTAAGAG-A-GAAACTTTGA-TT
* * *** *
97152 T-GCAAAAGTTAGTGGGAA-AAAGGCCTTTCATGC
125 TATCAAAA---AGGGGGAAGAAA-AATTTTCTTGC
* * *
97185 GAAACCAAAACATCAATATTGCAG-ATCTTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGA
1 GAAACCAAAACATCAATATCG-TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGA
** * * * *
97249 AAAGAATGGGGATTAAAATGACTATTCATGTTTGTCTTATTTAATAGACAAACTTTGATTTCATA
65 AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAGAAACTTTGATTT-ATC
* **
97314 AAAAATGGTGGAAAGGAAAGCTTTTCTTGC
129 AAAAA-GG-GGGAA-GAAAAATTTTCTTGC
** * * * * *
97344 GTCACCAAAGCATCAATGTCGTGTATCCTAATGAGAAGACTAAGTTTATGGTCCCTAATCC-AAA
1 GAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAA
* * * *
97408 AAAAATAGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTACCG
66 AAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAGAAACTTTGATT-TATC-
* *
97473 AAAATGGGGGAAAGAAAAGTTTTCTTGC
129 AAAAAGGGGG-AAGAAAAATTTTCTTGC
* * * * * * * * *
97501 GACACCAAAGCATCAATGTC-TAGTATCCTATTGA-AGGGACTGTGTTTTTGGCT-CCCAATCTT
1 GAAACCAAAACATCAATATCGT-GTATCCTAATGAGA-AGACTATGTTTATGG-TGCCTAATCCT
* * * * * * * ** *
97563 GAAAAGAATGGAGATTATTACGAGAATTGATGCTTGTCTTTTTTGTGGGATG-AACTTTGATTTT
63 GAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGA-GAAACTTTGA-TTT
* * ** * * *
97627 ATGGAAAATAAGGCAAAGAAAAGATTTCCATCC
126 AT-CAAAA-AGGGGGAAGAAAA-ATTTTCTTGC
* ** * * * * * * *
97660 AAAAAAAAAAAATCATCATTATCATTTCTCCTAATGAG--GAATGTGCTTTA--ATG-CTAATCA
1 --GAAACCAAAA-CATCAATATCGTGTATCCTAATGAGAAGACTATG-TTTATGGTGCCTAATC-
** * * * * * ** * *
97720 C--AAAATGAATGAAGATCATTACT-AGAATCCATGTTTGCCCCATTTGAG-GCATG-AACTTAG
61 CTGAAAA-GAATGGGGATTAGTA-TGAGTATTCATGTTTGTCTTATTTAAGAG-A-GAAACTTTG
* *** * *
97780 ACTTTA-CAAAAATTAGTGGGAA-AAAGGCCTATCATGC
122 A-TTTATC-AAAA--AGGGGGAAGAAA-AATTTTCTTGC
* ** * *
97817 GAAACCAAAACATCAATATTGCATATCCTAATGAGAAGACAATGTTTATGGTGCC-AATCCAGAA
1 GAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAA
97881 AAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAG-GCAAACTTTGATTCTATC
66 AAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAG-AAACTTTGATT-TATC
* *
97945 AAAAACGGGGGAAAGAAAAGTTTTCTTGT
129 AAAAA-GGGGG-AAGAAAAATTTTCTTGC
* * * ** * * * * *
97974 GATACCAAAGCATCAATGTCAAGTATCCCATTGA-AGGGAC-AGTGTTTTTGGCT-CCTAATCTT
1 GAAACCAAAACATCAATATCGTGTATCCTAATGAGA-AGACTA-TGTTTATGG-TGCCTAATCCT
* * * * * * * *
98036 GAAAAGAATGGAGATT-GTTACGAG-AATCGATGCTTGTCTTTTTTAGGGGATG-AACATTGATT
63 GAAAAGAATGGGGATTAG-TATGAGTATTC-ATGTTTGTCTTATTTAAGAGA-GAAACTTTGA-T
* * ** * *
98098 TTATGGAAAATAAGGCAAAGAAAAGATTTCCATGC
124 TTAT-CAAAA-AGGGGGAAGAAAA-ATTTTCTTGC
** * * * * * * *
98133 -AAAAGAAAATCATCAATATCATTTCTCCTAATGAG--GAATGTGCTTATAGTG-CTAATCAC--
1 GAAACCAAAA-CATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC-CTG
* * * ** * * **
98192 AAAATGAAT---GA--AG-ATCATTACT-ATGTTTGTCCCATTTGAG-GCATG-AACTTAGA-CC
64 AAAA-GAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAG-A-GAAACTTTGATTT
*** *
98247 ATACAAAAATTGGTGGGAA-AAAGGCCTTTCTTGG
126 AT-CAAAAA--GG-GGGAAGAAA-AATTTTCTTGC
* * * *
98281 GAAACCAAAACATCAATATCGCGTATGCC-AAAGGGAAGACTATGTTTATGGTGCCTAATCCTAA
1 GAAACCAAAACATCAATATCGTGTAT-CCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGA
* * ** * * *
98345 AAAGAATGAAGG-TTAGTTTGACCATTCATGTCTGTCTTATTCT--TAGACAAACTTTGATTCTA
65 AAAGAATG-GGGATTAGTATGAGTATTCATGTTTGTCTTATT-TAAGAGAGAAACTTTGATT-TA
* * *
98407 CCAAAAATGGAGGAAAGAAAAGTTTTCTTGC
127 TCAAAAA-GG-GGGAAGAAAAATTTTCTTGC
* * * * * * * *
98438 GACACCAAAGCATCAATGTC-TAGTATCCTATTGA-AGGGACTGTGTTTTTGGCT-CCTAATCTT
1 GAAACCAAAACATCAATATCGT-GTATCCTAATGAGA-AGACTATGTTTATGG-TGCCTAATCCT
* * * * * * * *
98500 GAAAAGAATGGAGATTATTACGAG-AATCGATGCTTGTCTTTTTTATGGGATG-AACTTTGATTT
63 GAAAAGAATGGGGATTAGTATGAGTATTC-ATGTTTGTCTTATTTAAGAGA-GAAACTTTGA-TT
* * ** * *
98563 TATGGAAAATAAGGCAAAGAAAAGTTTTCCAT-C
125 TAT-CAAAA-AGGGGGAAGAAAAATTTT-CTTGC
* ** * * * * * * * *
98596 CAAAAGAAAATCATCATTATCATTTCTCCTAATGAG--GAATGTGCTT-TGATG-CTAATCAC--
1 GAAACCAAAA-CATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC-CTG
** * * * * * ** * *
98655 AAAATGAATGAAGATCATTACT-AGAATCCATGTTTGCCCCATTTGAG-GCATG-AACTTAGACT
64 AAAA-GAATGGGGATTAGTA-TGAGTATTCATGTTTGTCTTATTTAAGAG-A-GAAACTTTGA-T
** *** *
98717 TTA-CAAAAATCAATGGGAA-AAAGGCCTTTCATGC
124 TTATC-AAAA--AGGGGGAAGAAA-AATTTTCTTGC
* ** * *
98751 GAAACCAAAACATCAATATTGCATATCCTAATGAGAAGACAATGTTTATGGTGCCTAATCCAGAA
1 GAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAA
98816 AAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAG-GCAAACTTTGATTCTATC
66 AAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAG-AAACTTTGATT-TATC
*
98880 AAAAACGGGGGAAAGAAAAGTTTTCTTGC
129 AAAAA-GGGGG-AAGAAAAATTTTCTTGC
* *
98909 GATACCAAAGCATCAAT
1 GAAACCAAAACATCAAT
98926 GTCAAGTATC
Statistics
Matches: 1781, Mismatches: 549, Indels: 398
0.65 0.20 0.15
Matches are distributed among these distances:
146 1 0.00
147 6 0.00
148 26 0.01
149 33 0.02
150 15 0.01
151 12 0.01
152 5 0.00
153 2 0.00
154 53 0.03
155 85 0.05
156 97 0.05
157 561 0.31
158 553 0.31
159 282 0.16
160 23 0.01
161 9 0.01
162 17 0.01
163 1 0.00
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.30
Consensus pattern (155 bp):
GAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAA
AAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAGAAACTTTGATTTATCAA
AAAGGGGGAAGAAAAATTTTCTTGC
Found at i:97552 original size:631 final size:628
Alignment explanation
Indices: 96696--97993 Score: 1912
Period size: 631 Copynumber: 2.1 Consensus size: 628
96686 AAATTGGTGG
* * *
96696 GAAAATGCTTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTAAGTTCA
1 GAAAA-GCTTTTCTTGCG-TACCAAAGCATCAATGTCGCGTATCCTAATGAGAAGACTAAGTTCA
* * * * * * * *
96761 TGGTGCCTTATCCTGAAAAGAATGGGGATTAGTATTAGTATTCATGTTTGTCCTCTTTAAGAGAG
64 TGGTCCCTAATCCTAAAAAAAATAGGGATTAGTATGAGTATTCATGTTTGTCCTATTTAAGAGAC
* * *
96826 AAACTTTGATTCTATCAAAAACGGGGGAAGAAAAATTTTCTTGTGACACCAAAGCATCATTGTCA
129 AAACTTTGATTCTACCAAAAACGGGGGAAGAAAAATTTTCTTGCGACACCAAAGCATCAATGTCA
*
96891 TGTATCCTATTGAAGGGATGGTGTTTTTGGCTCCCAATCTTGAAAAGAATGGAGATTGTTACGAG
194 TGTATCCTATTGAAGGGATGGTGTTTTTGGCTCCCAATCTTGAAAAGAATGGAGATTATTACGAG
96956 AATTGATGCTTGTCTTATTTAG-GAGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGA
259 AATTGATGCTTGTCTT-TTTAGTGAGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGA
* * *
97020 GATCCATGC-AAAAGAAAATCATC-TATATCGTTTCTCCTAATGAGGAATATGC-TTACAGAGCC
323 GATCCATCCAAAAAAAAAATCATCAT-TATCATTTCTCCTAATGAGGAATATGCTTTA-A-AG-C
* * * *
97082 TAATCAAAAAATAAATGAAGATTATTACTAGAATCCATGTTTGTCCTATTTGGGGCATGAACTTA
384 TAATCAAAAAATAAATGAAGATCATTACTAGAATCCATGTTTGCCCCATTTGAGGCATGAACTTA
* * *
97147 GACTTTGCAAAAGTTAGTGGGAAAAAGGCCTTTCATGCGAAACCAAAACATCAATATTGCAGATC
449 GACTTTACAAAAATTAGTGGGAAAAAGGCCTATCATGCGAAACCAAAACATCAATATTGCAGATC
* * *
97212 TTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAAAATGACTATTCA
514 CTAATGAGAAGACAATGTTTATGGTGCC-AATCCAGAAAAGAATGGGGATTAAAATGACTATTCA
* * *
97277 TGTTTGTCTTATTTAATAGACAAACTTTGATT-TCATAAAAAATGGTGGAAA
578 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCT-ATAAAAAACGGGGGAAA
* * *
97328 GGAAAGCTTTTCTTGCGTCACCAAAGCATCAATGTCGTGTATCCTAATGAGAAGACTAAGTTTAT
1 GAAAAGCTTTTCTTGCGT-ACCAAAGCATCAATGTCGCGTATCCTAATGAGAAGACTAAGTTCAT
*
97393 GGTCCCTAATCC-AAAAAAAATAGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACA
65 GGTCCCTAATCCTAAAAAAAATAGGGATTAGTATGAGTATTCATGTTTGTCCTATTTAAGAGACA
* * *
97457 AACTTTGATTCTACCGAAAATGGGGGAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTC-
130 AACTTTGATTCTACCAAAAACGGGGG-AAGAAAAATTTTCTTGCGACACCAAAGCATCAATGTCA
97521 TAGTATCCTATTGAAGGGACT-GTGTTTTTGGCTCCCAATCTTGAAAAGAATGGAGATTATTACG
194 T-GTATCCTATTGAAGGGA-TGGTGTTTTTGGCTCCCAATCTTGAAAAGAATGGAGATTATTACG
* *
97585 AGAATTGATGCTTGTCTTTTTTGTGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAG
257 AGAATTGATGCTTGTCTTTTTAGTGAGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAG
** * *
97650 ATTTCCATCCAAAAAAAAAAAATCATCATTATCATTTCTCCTAATGAGGAATGTGCTTTAATGCT
322 AGATCCATCC--AAAAAAAAAATCATCATTATCATTTCTCCTAATGAGGAATATGCTTTAAAGCT
* *
97715 AATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGCCCCATTTGAGGCATGAACTTAG
385 AATCAAAAAATAAATGAAGATCATTACTAGAATCCATGTTTGCCCCATTTGAGGCATGAACTTAG
*
97780 ACTTTACAAAAATTAGTGGGAAAAAGGCCTATCATGCGAAACCAAAACATCAATATTGCATATCC
450 ACTTTACAAAAATTAGTGGGAAAAAGGCCTATCATGCGAAACCAAAACATCAATATTGCAGATCC
** *
97845 TAATGAGAAGACAATGTTTATGGTGCCAATCCAGAAAAGAATGGGGATTAGTATGAGTATTCATG
515 TAATGAGAAGACAATGTTTATGGTGCCAATCCAGAAAAGAATGGGGATTAAAATGACTATTCATG
* *
97910 TTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAACGGGGGAAA
580 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGGGGAAA
*
97959 GAAAAG-TTTTCTTGTGATACCAAAGCATCAATGTC
1 GAAAAGCTTTTCTTGCG-TACCAAAGCATCAATGTC
97994 AAGTATCCCA
Statistics
Matches: 600, Mismatches: 54, Indels: 26
0.88 0.08 0.04
Matches are distributed among these distances:
630 99 0.17
631 304 0.51
632 153 0.25
633 1 0.00
634 39 0.06
635 4 0.01
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.31
Consensus pattern (628 bp):
GAAAAGCTTTTCTTGCGTACCAAAGCATCAATGTCGCGTATCCTAATGAGAAGACTAAGTTCATG
GTCCCTAATCCTAAAAAAAATAGGGATTAGTATGAGTATTCATGTTTGTCCTATTTAAGAGACAA
ACTTTGATTCTACCAAAAACGGGGGAAGAAAAATTTTCTTGCGACACCAAAGCATCAATGTCATG
TATCCTATTGAAGGGATGGTGTTTTTGGCTCCCAATCTTGAAAAGAATGGAGATTATTACGAGAA
TTGATGCTTGTCTTTTTAGTGAGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGAGAT
CCATCCAAAAAAAAAATCATCATTATCATTTCTCCTAATGAGGAATATGCTTTAAAGCTAATCAA
AAAATAAATGAAGATCATTACTAGAATCCATGTTTGCCCCATTTGAGGCATGAACTTAGACTTTA
CAAAAATTAGTGGGAAAAAGGCCTATCATGCGAAACCAAAACATCAATATTGCAGATCCTAATGA
GAAGACAATGTTTATGGTGCCAATCCAGAAAAGAATGGGGATTAAAATGACTATTCATGTTTGTC
TTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGGGGAAA
Found at i:97602 original size:158 final size:155
Alignment explanation
Indices: 95379--99016 Score: 894
Period size: 158 Copynumber: 23.1 Consensus size: 155
95369 TAGTTTGACC
* * * *
95379 ATTCATGTCTGTCTTATTCT-TAGACAAACTTTGATTCCATCAAAAA-GGGTGAAAAGAAAAGCT
1 ATTCATGTTTGTCTTATT-TAGAGACAAACTTTGATTCTATCAAAAATGGG-GGAAAGAAAAGCT
* * * * *
95442 TTTCTTGCGACACCAAAGCATCAATGTC-ATGTATCCT-ATAGAAGGGAATGTGTTTTTGATACC
64 TTTCTTGCGAAACCAAAGCATCAATATCTA-GTATCCTAAT-G-AGGGACTGTGTTTATGGT-CC
* * * * *
95505 AAATCTTGAAAAGAATGTAGATTCTTACAAGA
125 TAATC-AGAAAAGAATGGAGATTATTACGAGA
* * ** * * *** ** * *
95537 A-TCGATGCTTGTCTTATTTAAGGGATGAACTCTGATTTTAGGGAAAATAAGGCAAAGAAAAGAT
1 ATTC-ATGTTTGTCTTATTT-AGAGACAAACTTTGATTCTATCAAAAATGGGGGAAAGAAAAGCT
*** * ** * * * * * *
95601 TTTCGCACAAAAGAAAATCATCAATATC-ATTTCTCCTAATGA-GGAATGTGCTTATAGTGCCTA
64 TTTCTTGCGAAACCAAAGCATCAATATCTA-GTATCCTAATGAGGGACTGTGTTTATGGT-CCTA
* * * * *
95664 ATCACAAAACGAATGAAGATCATTGCTAGA
127 ATCAGAAAA-GAATGGAGATTATTACGAGA
* * ** * * *
95694 ATCCAAGTTTGTCCCATTT-GAGGCATGAACTTAGACTT-TA-CAAAAACTGGCGGG-AA-AAAT
1 ATTCATGTTTGTCTTATTTAGAGACA--AACTTTGA-TTCTATCAAAAA-TGG-GGGAAAGAAAA
* * * * * * *
95754 GCCTTTCTAGCGAAACTAAAGCATCATTATC-ATGTATCCTAATGAGAAGAAC-ATGTTTACGGT
61 GCTTTTCTTGCGAAACCAAAGCATCAATATCTA-GTATCCTAATGAG--GGACTGTGTTTATGGT
* * * **
95817 GCCTAATCCAGAAAAGAATATG-GATTAGTATGACT
123 -CCTAAT-CAGAAAAGAAT-GGAGATTATTACGAGA
* ** *
95852 ATTCATGTTTGTCTTATTTAAGAGACAAACATTGATTCTATCAAAAATGATGTAAAGAAAAGCTT
1 ATTCATGTTTGTCTTATTT-AGAGACAAACTTTGATTCTATCAAAAATGGGGGAAAGAAAAGCTT
* * * * * * *
95917 TTCATGCGACACCAAAGCATCAATGTCAAGTATCCTAATGAAGGAAATATGTTT-TAGGTTCCTA
65 TTCTTGCGAAACCAAAGCATCAATATCTAGTATCCTAATG-AGGGACTGTGTTTAT-GG-TCCTA
** * * **
95981 ATCCTAACAATG-ATGGTGACTGCTACGAGA
127 ATCAGAA-AA-GAATGGAGATTATTACGAGA
* *** * ** * *** ** * *
96011 A-TCGTTGCCCGTCTT-TTTAAGGGATGAACTTTGATTATAAGGAAAATAAGGCAAAGAAAAGAT
1 ATTC-ATGTTTGTCTTATTT-AGAGACAAACTTTGATTCTATCAAAAATGGGGGAAAGAAAAGCT
* * * * * * * * * **
96074 TTTCATGTAGAAA-AAAATCATCAATATC-ATTTATCCTAGTAAGGAGAATTTGCTTCTA-GCAC
64 TTTCTTG-CGAAACCAAAGCATCAATATCTA-GTATCCTAATGAGG-GACTGTG-TT-TATGGTC
* * *
96136 CTAATCATAAAATTAAT-GACGATCATTA-GTAGA
124 CTAATCAGAAAA-GAATGGA-GATTATTACG-AGA
* * * * * **
96169 ATCCATGTTTGTCTCATTTA-AGGCACGAACATAGACTT-TA-CAAAAATTGGTGGG-AA-AATT
1 ATTCATGTTTGTCTTATTTAGA-G-ACAAACTTTGA-TTCTATCAAAAA-TGG-GGGAAAGAAAA
* * * * * *
96229 GCCTTTC-TGAGAAACCAAAACATCAATATCGCA-TATCCTAATGAGAAGACTATGTTTATGGTG
61 GCTTTTCTTGCGAAACCAAAGCATCAATATC-TAGTATCCTAATGAG-GGACTGTGTTTATGGT-
* * * **
96292 CCTAATCCTGAAAAGAATGGGGATT-TGTATGACT
123 CCTAAT-CAGAAAAGAATGGAGATTAT-TACGAGA
* * * * *
96326 ATTTATGTTTGTC-TATTTAAGAGACAAACTTTGATTCCATTAAAAATGGTGGAAAGAAAAGCTG
1 ATTCATGTTTGTCTTATTT-AGAGACAAACTTTGATTCTATCAAAAATGGGGGAAAGAAAAGCTT
* * * * * *
96390 TTCTTGCGACACTAAAGCATCAATGTC-ATGTATCCTATTGAAGGGAATGTGCTTT-TGGTACCC
65 TTCTTGCGAAACCAAAGCATCAATATCTA-GTATCCTAATG-AGGGACTGTG-TTTATGGT-CCT
* * *
96453 AAACATGGAAAGAATGGAGATTGTTACGAGA
126 AATCA-GAAAAGAATGGAGATTATTACGAGA
** * * * ** * **** * * * *
96484 A-TCGGGGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGGAAATAGAGGCAAGAAAAGAT
1 ATTC-ATGTTTGTCTTATTT-AGAGACAAACTTTGATTCTATCAAAAATGGGGGAAAGAAAAGCT
**** * ** * * * * * ** *
96548 TTTGACACAAAAGAAAATCATCAATATC-ATTTCTCCGAATGAGGAGAATGTGCATATAGTGCCT
64 TTTCTTGCGAAACCAAAGCATCAATATCTA-GTATCCTAATGAGG-GACTGTGTTTATGGT-CCT
* * * *
96612 AATCACAAAATGAATGAAGATCATTACTAGA
126 AATCAGAAAA-GAATGGAGATTATTACGAGA
* * * *
96643 ATCCATGTTTATCTCATTT-GAGGA-ATGAACTTAGACTT-TA-CAAAAATTGGTGGG--A-AAA
1 ATTCATGTTTGTCTTATTTAGA-GACA--AACTTTGA-TTCTATCAAAAA-TGG-GGGAAAGAAA
* * ** * ** *
96701 TGCTTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTAAGTTCATGGTG
60 AGCTTTTCTTGCGAAACCAAAGCATCAATATCTAGTATCCTAATGAG-GGACTGTGTTTATGGT-
* * * * ** *
96766 CCTTATCCTGAAAAGAATGGGGATTAGTATTAGT
123 CCTAAT-CAGAAAAGAATGGAGATTATTACGAGA
* * * * *
96800 ATTCATGTTTGTCCTCTTTAAGAGAGAAACTTTGATTCTATCAAAAACGGGGG-AAGAAAA-ATT
1 ATTCATGTTTGTCTTATTT-AGAGACAAACTTTGATTCTATCAAAAATGGGGGAAAGAAAAGCTT
* * * * * * *
96863 TTCTTGTGACACCAAAGCATCATTGTC-ATGTATCCTATTGAAGGGA-TGGTGTTTTTGGCTCCC
65 TTCTTGCGAAACCAAAGCATCAATATCTA-GTATCCTAATG-AGGGACT-GTGTTTATGG-TCCT
* *
96926 AATCTTGAAAAGAATGGAGATTGTTACGAGA
126 AATC-AGAAAAGAATGGAGATTATTACGAGA
* * ** * ** ** * ***
96957 ATTGATGCTTGTCTTATTTAGGAGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGAGA
1 ATTCATGTTTGTCTTATTTA-GAGACAAACTTTGATTCTATCAAAAATGGGGGAAAGAAAAGCTT
* * * ** * * * * * * * *
97022 TCCATGCAAAAGAAAATCATCTATATCGT-TTCTCCTAATGA-GGAATATGCTTACAGAG-CCTA
65 TTCTTGCGAAACCAAAGCATCAATATC-TAGTATCCTAATGAGGGACTGTGTTTA-TG-GTCCTA
* * * *
97084 ATCAAAAAATAAATGAAGATTATTACTAGA
127 ATCAGAAAA-GAATGGAGATTATTACGAGA
* * * * * * * * *
97114 ATCCATGTTTGTCCTATTT-GGGGCATGAACTTAGACTT-T-GCAAAAGTTAGTGGG-AA-AAAG
1 ATTCATGTTTGTCTTATTTAGAGACA--AACTTTGA-TTCTATCAAAA-AT-GGGGGAAAGAAAA
* * * * * *
97174 GCCTTTCATGCGAAACCAAAACATCAATAT-TGCAG-ATCTTAATGAGAAGACTATGTTTATGGT
61 GCTTTTCTTGCGAAACCAAAGCATCAATATCT--AGTATCCTAATGAG-GGACTGTGTTTATGGT
* * ** * **
97237 GCCTAATCCTGAAAAGAATGGGGATTAAAATGACT
123 -CCTAAT-CAGAAAAGAATGGAGATTATTACGAGA
* * * *
97272 ATTCATGTTTGTCTTATTTAATAGACAAACTTTGATT-TCATAAAAAATGGTGGAAAGGAAAGCT
1 ATTCATGTTTGTCTTATTT-AGAGACAAACTTTGATTCT-ATCAAAAATGGGGGAAAGAAAAGCT
** * * **
97336 TTTCTTGCGTCACCAAAGCATCAATGTCGT-GTATCCTAATGAGAAGACTAAGTTTATGGTCCCT
64 TTTCTTGCGAAACCAAAGCATCAATATC-TAGTATCCTAATGAG-GGACTGTGTTTATGGT-CCT
* * * *
97400 AATCCA-AAAAAAATAGG-GATTAGTATGAGT
126 AAT-CAGAAAAGAAT-GGAGATTATTACGAGA
* *
97430 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTACCGAAAATGGGGGAAAGAAAAG-TT
1 ATTCATGTTTGTCTTATTT-AGAGACAAACTTTGATTCTATCAAAAATGGGGGAAAGAAAAGCTT
* * * * *
97494 TTCTTGCGACACCAAAGCATCAATGTCTAGTATCCTATTGAAGGGACTGTGTTTTTGGCTCCCAA
65 TTCTTGCGAAACCAAAGCATCAATATCTAGTATCCTAATG-AGGGACTGTGTTTATGG-TCCTAA
*
97559 TCTTGAAAAGAATGGAGATTATTACGAGA
128 TC-AGAAAAGAATGGAGATTATTACGAGA
* * * * * ** * ** ** * *
97588 ATTGATGCTTGTCTTTTTTGTGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATT
1 ATTCATGTTTGTCTTATTT-AGAGACAAACTTTGATTCTATCAAAAATGGGGGAAAGAAAAGCTT
* * * * ** * * * * *
97653 TCCATCCAAAAAAAAAAAATCATCATTATC-ATTTCTCCTAATGA-GGAATGTGCTTTAAT-G--
65 TTCTTGC---GAAACCAAAGCATCAATATCTA-GTATCCTAATGAGGGACTGTG-TTT-ATGGTC
* * * *
97713 CTAATCACAAAATGAATGAAGATCATTACTAGA
124 CTAATCAGAAAA-GAATGGAGATTATTACGAGA
* * ** * * * *
97746 ATCCATGTTTGCCCCATTT-GAGGCATGAACTTAGACTT-TA-CAAAAATTAGTGGG-AA-AAAG
1 ATTCATGTTTGTCTTATTTAGAGACA--AACTTTGA-TTCTATCAAAAA-T-GGGGGAAAGAAAA
* * * * * **
97806 GCCTATCATGCGAAACCAAAACATCAATAT-T-GCATATCCTAATGAGAAGACAATGTTTATGGT
61 GCTTTTCTTGCGAAACCAAAGCATCAATATCTAG--TATCCTAATGAG-GGACTGTGTTTATGGT
* * * *
97869 GCC-AATCCAGAAAAGAATGGGGATTAGTATGAGT
123 -CCTAAT-CAGAAAAGAATGGAGATTATTACGAGA
* *
97903 ATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAACGGGGGAAAGAAAAG-TT
1 ATTCATGTTTGTCTTATTT-AGAGACAAACTTTGATTCTATCAAAAATGGGGGAAAGAAAAGCTT
* * * * * * * *
97967 TTCTTGTGATACCAAAGCATCAATGTCAAGTATCCCATTGAAGGGACAGTGTTTTTGGCTCCTAA
65 TTCTTGCGAAACCAAAGCATCAATATCTAGTATCCTAATG-AGGGACTGTGTTTATGG-TCCTAA
* *
98032 TCTTGAAAAGAATGGAGATTGTTACGAGA
128 TC-AGAAAAGAATGGAGATTATTACGAGA
* * * ** * * ** ** * *
98061 A-TCGATGCTTGTCTTTTTTAGGGGATGAACATTGATTTTATGGAAAATAAGGCAAAGAAAAGAT
1 ATTC-ATGTTTGTCTTATTTA-GAGACAAACTTTGATTCTATCAAAAATGGGGGAAAGAAAAGCT
* * * ** * * * * * * *
98125 TTCCATGCAAAAGAAAATCATCAATATC-ATTTCTCCTAATGA-GGAATGTGCTTATAGTGCTAA
64 TTTCTTGCGAAACCAAAGCATCAATATCTA-GTATCCTAATGAGGGACTGTGTTTATGGTCCTAA
* * *
98188 TCACAAAATGAATGAAGATCATTAC----
128 TCAGAAAA-GAATGGAGATTATTACGAGA
** * * * *
98213 --T-ATGTTTGTCCCATTT-GAGGCATGAACTTAGA--CCATACAAAAATTGGTGGG-AA-AAAG
1 ATTCATGTTTGTCTTATTTAGAGACA--AACTTTGATTCTAT-CAAAAA-TGG-GGGAAAGAAAA
* * * ** * *
98270 GCCTTTCTTGGGAAACCAAAACATCAATATCGCGTATGCC-AAAG-GGAAGACTATGTTTATGGT
61 GCTTTTCTTGCGAAACCAAAGCATCAATATCTAGTAT-CCTAATGAGG--GACTGTGTTTATGGT
* * * **
98333 GCCTAATCCTA-AAAAGAATGAAGGTTAGTT-TGACC
123 -CCTAAT-C-AGAAAAGAATGGAGATTA-TTACGAGA
* * * *
98368 ATTCATGTCTGTCTTATTCT-TAGACAAACTTTGATTCTACCAAAAATGGAGGAAAGAAAAG-TT
1 ATTCATGTTTGTCTTATT-TAGAGACAAACTTTGATTCTATCAAAAATGGGGGAAAGAAAAGCTT
* * * *
98431 TTCTTGCGACACCAAAGCATCAATGTCTAGTATCCTATTGAAGGGACTGTGTTTTTGGCTCCTAA
65 TTCTTGCGAAACCAAAGCATCAATATCTAGTATCCTAATG-AGGGACTGTGTTTATGG-TCCTAA
*
98496 TCTTGAAAAGAATGGAGATTATTACGAGA
128 TC-AGAAAAGAATGGAGATTATTACGAGA
* * * ** * ** ** *
98525 A-TCGATGCTTGTCTTTTTTATGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAG-T
1 ATTC-ATGTTTGTCTTATTTA-GAGACAAACTTTGATTCTATCAAAAATGGGGGAAAGAAAAGCT
* * * ** * * * * * * * *
98588 TTTCCATCCAAAAGAAAATCATCATTATC-ATTTCTCCTAATGA-GGAATGTGCTT-TGATGCTA
64 TTT-CTTGCGAAACCAAAGCATCAATATCTA-GTATCCTAATGAGGGACTGTGTTTATGGTCCTA
* * * *
98650 ATCACAAAATGAATGAAGATCATTACTAGA
127 ATCAGAAAA-GAATGGAGATTATTACGAGA
* * ** * * ** *
98680 ATCCATGTTTGCCCCATTT-GAGGCATGAACTTAGACTT-TA-CAAAAATCAATGGG-AA-AAAG
1 ATTCATGTTTGTCTTATTTAGAGACA--AACTTTGA-TTCTATCAAAAAT--GGGGGAAAGAAAA
* * * * **
98740 GCCTTTCATGCGAAACCAAAACATCAATAT-T-GCATATCCTAATGAGAAGACAATGTTTATGGT
61 GCTTTTCTTGCGAAACCAAAGCATCAATATCTAG--TATCCTAATGAG-GGACTGTGTTTATGGT
* * * *
98803 GCCTAATCCAGAAAAGAATGGGGATTAGTATGAGT
123 -CCTAAT-CAGAAAAGAATGGAGATTATTACGAGA
* *
98838 ATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAACGGGGGAAAGAAAAG-TT
1 ATTCATGTTTGTCTTATTT-AGAGACAAACTTTGATTCTATCAAAAATGGGGGAAAGAAAAGCTT
* * * * * * *
98902 TTCTTGCGATACCAAAGCATCAATGTCAAGTATCCTATTGAAGGGACAGTGTTTTTGGCTCCCAA
65 TTCTTGCGAAACCAAAGCATCAATATCTAGTATCCTAATG-AGGGACTGTGTTTATGG-TCCTAA
* *
98967 TCTTGAAAAGAATGGAGATTATTACAAGA
128 TC-AGAAAAGAATGGAGATTATTACGAGA
* *
98996 A-TCGATGCTTGTCTTTTTTAG
1 ATTC-ATGTTTGTCTTATTTAG
99017 GGGATGAACT
Statistics
Matches: 2462, Mismatches: 776, Indels: 485
0.66 0.21 0.13
Matches are distributed among these distances:
147 4 0.00
148 35 0.01
149 22 0.01
150 13 0.01
151 16 0.01
152 7 0.00
153 3 0.00
154 68 0.03
155 67 0.03
156 179 0.07
157 682 0.28
158 816 0.33
159 481 0.20
160 40 0.02
161 7 0.00
162 22 0.01
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (155 bp):
ATTCATGTTTGTCTTATTTAGAGACAAACTTTGATTCTATCAAAAATGGGGGAAAGAAAAGCTTT
TCTTGCGAAACCAAAGCATCAATATCTAGTATCCTAATGAGGGACTGTGTTTATGGTCCTAATCA
GAAAAGAATGGAGATTATTACGAGA
Found at i:98465 original size:464 final size:465
Alignment explanation
Indices: 97347--99296 Score: 2949
Period size: 464 Copynumber: 4.2 Consensus size: 465
97337 TTCTTGCGTC
* * * * * *
97347 ACCAAAGCATCAATGTCGTGTATCCTAATGAGAAGACTAAGTTTATGGTCCCTAATCCAAAAAAA
1 ACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCAAAAAGA
*
97412 AT-AGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTACCGAAA
66 ATGAGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAG-CAAACTTTGATTCTACCAAAA
* *
97476 ATGGGGGAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCTAGTATCCTATTGAAGGGAC
130 ACGGGGGAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCAAGTATCCTATTGAAGGGAC
* *
97541 TGTGTTTTTGGCTCCCAATCTTGAAAAGAATGGAGATTATTACGAGAATTGATGCTTGTCTTTTT
195 AGTGTTTTTGGCTCCCAATCTTGAAAAGAATGGAGATTATTACGAGAATCGATGCTTGTCTTTTT
*
97606 T-GTGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCCATCCAAAAAAAAAA
260 TAG-GGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCCATCC---AAAAGAA
* *
97670 AATCATCATTATCATTTCTCCTAATGAGGAATGTGCTTTAATGCTAATCACAAAATGAATGAAGA
321 AATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTTAGTGCTAATCACAAAATGAATGAAGA
**
97735 TCATTACTAGAATCCATGTTTGCCCCATTTGAGGCATGAACTTAGACTTTACAAAAATTAGTGGG
386 TCATTAC----AT-CATGTTTGCCCCATTTGAGGCATGAACTTAGACCATACAAAAATTAGTGGG
*
97800 AAAAAGGCCTATCATGCGAA
446 AAAAAGGCCTTTCATGCGAA
* * *
97820 ACCAAAACATCAATATTGCATATCCTAATGAGAAGACAATGTTTATGGTGCC-AATCCAGAAAAG
1 ACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCA-AAAAG
*
97884 AATG-GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAA
65 AATGAGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGA-GCAAACTTTGATTCTACCAAA
* * *
97948 AACGGGGGAAAGAAAAGTTTTCTTGTGATACCAAAGCATCAATGTCAAGTATCCCATTGAAGGGA
129 AACGGGGGAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCAAGTATCCTATTGAAGGGA
* *
98013 CAGTGTTTTTGGCTCCTAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTTT
194 CAGTGTTTTTGGCTCCCAATCTTGAAAAGAATGGAGATTATTACGAGAATCGATGCTTGTCTTTT
* *
98078 TTAGGGGATGAACATTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAAT
259 TTAGGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCCATCCAAAAGAAAAT
98143 CATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCTAATCACAAAATGAATGAAGATC
324 CATCAATATCATTTCTCCTAATGAGGAATGTGCTT-TAGTGCTAATCACAAAATGAATGAAGATC
* *
98208 ATTAC-T-ATGTTTGTCCCATTTGAGGCATGAACTTAGACCATACAAAAATTGGTGGGAAAAAGG
388 ATTACATCATGTTTGCCCCATTTGAGGCATGAACTTAGACCATACAAAAATTAGTGGGAAAAAGG
* *
98271 CCTTTCTTGGGAA
453 CCTTTCATGCGAA
* *
98284 ACCAAAACATCAATATCGCGTATGCC-AAAGGGAAGACTATGTTTATGGTGCCTAATCCTAAAAA
1 ACCAAAACATCAATATCGCGTAT-CCTAATGAGAAGACTATGTTTATGGTGCCTAATCC-AAAAA
* * ** * *
98348 GAATGAAGG-TTAGTTTGACCATTCATGTCTGTCTTATTCTTAGA-CAAACTTTGATTCTACCAA
64 GAATGAGGGATTAGTATGAGTATTCATGTTTGTCTTATT-TAAGAGCAAACTTTGATTCTACCAA
* * *
98411 AAATGGAGGAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCTAGTATCCTATTGAAGGG
128 AAACGGGGGAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCAAGTATCCTATTGAAGGG
* *
98476 ACTGTGTTTTTGGCTCCTAATCTTGAAAAGAATGGAGATTATTACGAGAATCGATGCTTGTCTTT
193 ACAGTGTTTTTGGCTCCCAATCTTGAAAAGAATGGAGATTATTACGAGAATCGATGCTTGTCTTT
* *
98541 TTTATGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGTTTTCCATCCAAAAGAAAA
258 TTTAGGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCCATCCAAAAGAAAA
*
98606 TCATCATTATCATTTCTCCTAATGAGGAATGTGCTTT-GATGCTAATCACAAAATGAATGAAGAT
323 TCATCAATATCATTTCTCCTAATGAGGAATGTGCTTTAG-TGCTAATCACAAAATGAATGAAGAT
** * *
98670 CATTACTAGAATCCATGTTTGCCCCATTTGAGGCATGAACTTAGACTTTACAAAAATCAATGGGA
387 CATTAC----AT-CATGTTTGCCCCATTTGAGGCATGAACTTAGACCATACAAAAATTAGTGGGA
98735 AAAAGGCCTTTCATGCGAA
447 AAAAGGCCTTTCATGCGAA
* * *
98754 ACCAAAACATCAATATTGCATATCCTAATGAGAAGACAATGTTTATGGTGCCTAATCCAGAAAAG
1 ACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCA-AAAAG
*
98819 AATG-GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAA
65 AATGAGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGA-GCAAACTTTGATTCTACCAAA
*
98883 AACGGGGGAAAGAAAAGTTTTCTTGCGATACCAAAGCATCAATGTCAAGTATCCTATTGAAGGGA
129 AACGGGGGAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCAAGTATCCTATTGAAGGGA
*
98948 CAGTGTTTTTGGCTCCCAATCTTGAAAAGAATGGAGATTATTACAAGAATCGATGCTTGTCTTTT
194 CAGTGTTTTTGGCTCCCAATCTTGAAAAGAATGGAGATTATTACGAGAATCGATGCTTGTCTTTT
*
99013 TTAGGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAAT
259 TTAGGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCCATCCAAAAGAAAAT
99078 CATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCTAATCACAAAATGAATGAAGATC
324 CATCAATATCATTTCTCCTAATGAGGAATGTGCTT-TAGTGCTAATCACAAAATGAATGAAGATC
* *
99143 ATTAC-T-ATGTTTGTCCCATTTGAGGCATGAACTTAGACCATACAAAAATTGGTGGGAAAAAGG
388 ATTACATCATGTTTGCCCCATTTGAGGCATGAACTTAGACCATACAAAAATTAGTGGGAAAAAGG
* *
99206 CCTTTCTTGGGAA
453 CCTTTCATGCGAA
* * *
99219 ACCAAAACATCAATATCGCGTATGCC-AAAGGGAAGACTATGTTTATGGTACCTAATCCTAAAAA
1 ACCAAAACATCAATATCGCGTAT-CCTAATGAGAAGACTATGTTTATGGTGCCTAATCC-AAAAA
*
99283 GAATGAAGG-TTAGT
64 GAATGAGGGATTAGT
99297 TTGACCATTT
Statistics
Matches: 1346, Mismatches: 103, Indels: 64
0.89 0.07 0.04
Matches are distributed among these distances:
462 1 0.00
463 32 0.02
464 343 0.25
465 166 0.12
466 13 0.01
467 1 0.00
468 1 0.00
469 9 0.01
470 189 0.14
471 271 0.20
472 38 0.03
473 280 0.21
474 2 0.00
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (465 bp):
ACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCAAAAAGA
ATGAGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGCAAACTTTGATTCTACCAAAAA
CGGGGGAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCAAGTATCCTATTGAAGGGACA
GTGTTTTTGGCTCCCAATCTTGAAAAGAATGGAGATTATTACGAGAATCGATGCTTGTCTTTTTT
AGGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCCATCCAAAAGAAAATCA
TCAATATCATTTCTCCTAATGAGGAATGTGCTTTAGTGCTAATCACAAAATGAATGAAGATCATT
ACATCATGTTTGCCCCATTTGAGGCATGAACTTAGACCATACAAAAATTAGTGGGAAAAAGGCCT
TTCATGCGAA
Found at i:99147 original size:935 final size:935
Alignment explanation
Indices: 97347--99305 Score: 3532
Period size: 935 Copynumber: 2.1 Consensus size: 935
97337 TTCTTGCGTC
* * * * * * *
97347 ACCAAAGCATCAATGTCGTGTAT-CCTAATGAGAAGACTAAGTTTATGGTCCCTAATCC-AAAAA
1 ACCAAAACATCAATATCGCGTATGCC-AAAGGGAAGACTATGTTTATGGTACCTAATCCTAAAAA
* * * ** * *
97410 AAAT-AGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTACCGA
65 GAATGAAGG-TTAGTTTGACCATTCATGTCTGTCTTATTT-AGAGACAAACTTTGATTCTACCAA
*
97474 AAATGGGGGAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCTAGTATCCTATTGAAGGG
128 AAATGGAGGAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCTAGTATCCTATTGAAGGG
*
97539 ACTGTGTTTTTGGCTCCCAATCTTGAAAAGAATGGAGATTATTACGAGAATTGATGCTTGTCTTT
193 ACTGTGTTTTTGGCTCCCAATCTTGAAAAGAATGGAGATTATTACGAGAATCGATGCTTGTCTTT
*
97604 TTTGTGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCCATCCAAAAAAAAA
258 TTTATGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCCATCC--AAAAAAA
97669 AAATCATCATTATCATTTCTCCTAATGAGGAATGTGCTTTAATGCTAATCACAAAATGAATGAAG
321 AAATCATCATTATCATTTCTCCTAATGAGGAATGTGCTTTAATGCTAATCACAAAATGAATGAAG
* *
97734 ATCATTACTAGAATCCATGTTTGCCCCATTTGAGGCATGAACTTAGACTTTACAAAAATTAGTGG
386 ATCATTACTAGAATCCATGTTTGCCCCATTTGAGGCATGAACTTAGACTTTACAAAAATCAATGG
97799 GAAAAAGGCCTATCATGCGAAACCAAAACATCAATATTGCATATCCTAATGAGAAGACAATGTTT
451 GAAAAAGGCCTATCATGCGAAACCAAAACATCAATATTGCATATCCTAATGAGAAGACAATGTTT
97864 ATGGTGCCAATCCAGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGGC
516 ATGGTGCCAATCCAGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGGC
*
97929 AAACTTTGATTCTATCAAAAACGGGGGAAAGAAAAGTTTTCTTGTGATACCAAAGCATCAATGTC
581 AAACTTTGATTCTATCAAAAACGGGGGAAAGAAAAGTTTTCTTGCGATACCAAAGCATCAATGTC
* * *
97994 AAGTATCCCATTGAAGGGACAGTGTTTTTGGCTCCTAATCTTGAAAAGAATGGAGATTGTTACGA
646 AAGTATCCCATTGAAGGGACAGTGTTTTTGGCTCCCAATCTTGAAAAGAATGGAGATTATTACAA
98059 GAATCGATGCTTGTCTTTTTTAGGGGATGAACATTGATTTTATGGAAAATAAGGCAAAGAAAAGA
711 GAATCGATGCTTGTCTTTTTTAGGGGATGAACATTGATTTTATGGAAAATAAGGCAAAGAAAAGA
98124 TTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCTAAT
776 TTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCTAAT
98189 CACAAAATGAATGAAGATCATTACTATGTTTGTCCCATTTGAGGCATGAACTTAGACCATACAAA
841 CACAAAATGAATGAAGATCATTACTATGTTTGTCCCATTTGAGGCATGAACTTAGACCATACAAA
98254 AATTGGTGGGAAAAAGGCCTTTCTTGGGAA
906 AATTGGTGGGAAAAAGGCCTTTCTTGGGAA
*
98284 ACCAAAACATCAATATCGCGTATGCCAAAGGGAAGACTATGTTTATGGTGCCTAATCCTAAAAAG
1 ACCAAAACATCAATATCGCGTATGCCAAAGGGAAGACTATGTTTATGGTACCTAATCCTAAAAAG
*
98349 AATGAAGGTTAGTTTGACCATTCATGTCTGTCTTATTCT-TAGACAAACTTTGATTCTACCAAAA
66 AATGAAGGTTAGTTTGACCATTCATGTCTGTCTTATT-TAGAGACAAACTTTGATTCTACCAAAA
98413 ATGGAGGAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCTAGTATCCTATTGAAGGGAC
130 ATGGAGGAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCTAGTATCCTATTGAAGGGAC
*
98478 TGTGTTTTTGGCTCCTAATCTTGAAAAGAATGGAGATTATTACGAGAATCGATGCTTGTCTTTTT
195 TGTGTTTTTGGCTCCCAATCTTGAAAAGAATGGAGATTATTACGAGAATCGATGCTTGTCTTTTT
* *
98543 TATGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGTTTTCCATCC-AAAAGAAAAT
260 TATGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCCATCCAAAAAAAAAAT
*
98607 CATCATTATCATTTCTCCTAATGAGGAATGTGCTTTGATGCTAATCACAAAATGAATGAAGATCA
325 CATCATTATCATTTCTCCTAATGAGGAATGTGCTTTAATGCTAATCACAAAATGAATGAAGATCA
98672 TTACTAGAATCCATGTTTGCCCCATTTGAGGCATGAACTTAGACTTTACAAAAATCAATGGGAAA
390 TTACTAGAATCCATGTTTGCCCCATTTGAGGCATGAACTTAGACTTTACAAAAATCAATGGGAAA
*
98737 AAGGCCTTTCATGCGAAACCAAAACATCAATATTGCATATCCTAATGAGAAGACAATGTTTATGG
455 AAGGCCTATCATGCGAAACCAAAACATCAATATTGCATATCCTAATGAGAAGACAATGTTTATGG
98802 TGCCTAATCCAGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGGCAAA
520 TGCC-AATCCAGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGGCAAA
98867 CTTTGATTCTATCAAAAACGGGGGAAAGAAAAGTTTTCTTGCGATACCAAAGCATCAATGTCAAG
584 CTTTGATTCTATCAAAAACGGGGGAAAGAAAAGTTTTCTTGCGATACCAAAGCATCAATGTCAAG
*
98932 TATCCTATTGAAGGGACAGTGTTTTTGGCTCCCAATCTTGAAAAGAATGGAGATTATTACAAGAA
649 TATCCCATTGAAGGGACAGTGTTTTTGGCTCCCAATCTTGAAAAGAATGGAGATTATTACAAGAA
*
98997 TCGATGCTTGTCTTTTTTAGGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTT
714 TCGATGCTTGTCTTTTTTAGGGGATGAACATTGATTTTATGGAAAATAAGGCAAAGAAAAGATTT
99062 CCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCTAATCAC
779 CCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCTAATCAC
99127 AAAATGAATGAAGATCATTACTATGTTTGTCCCATTTGAGGCATGAACTTAGACCATACAAAAAT
844 AAAATGAATGAAGATCATTACTATGTTTGTCCCATTTGAGGCATGAACTTAGACCATACAAAAAT
99192 TGGTGGGAAAAAGGCCTTTCTTGGGAA
909 TGGTGGGAAAAAGGCCTTTCTTGGGAA
99219 ACCAAAACATCAATATCGCGTATGCCAAAGGGAAGACTATGTTTATGGTACCTAATCCTAAAAAG
1 ACCAAAACATCAATATCGCGTATGCCAAAGGGAAGACTATGTTTATGGTACCTAATCCTAAAAAG
99284 AATGAAGGTTAGTTTGACCATT
66 AATGAAGGTTAGTTTGACCATT
99306 TGATGAAAAC
Statistics
Matches: 985, Mismatches: 32, Indels: 12
0.96 0.03 0.01
Matches are distributed among these distances:
934 204 0.21
935 492 0.50
937 250 0.25
938 35 0.04
939 4 0.00
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (935 bp):
ACCAAAACATCAATATCGCGTATGCCAAAGGGAAGACTATGTTTATGGTACCTAATCCTAAAAAG
AATGAAGGTTAGTTTGACCATTCATGTCTGTCTTATTTAGAGACAAACTTTGATTCTACCAAAAA
TGGAGGAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCTAGTATCCTATTGAAGGGACT
GTGTTTTTGGCTCCCAATCTTGAAAAGAATGGAGATTATTACGAGAATCGATGCTTGTCTTTTTT
ATGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCCATCCAAAAAAAAAATC
ATCATTATCATTTCTCCTAATGAGGAATGTGCTTTAATGCTAATCACAAAATGAATGAAGATCAT
TACTAGAATCCATGTTTGCCCCATTTGAGGCATGAACTTAGACTTTACAAAAATCAATGGGAAAA
AGGCCTATCATGCGAAACCAAAACATCAATATTGCATATCCTAATGAGAAGACAATGTTTATGGT
GCCAATCCAGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGGCAAACT
TTGATTCTATCAAAAACGGGGGAAAGAAAAGTTTTCTTGCGATACCAAAGCATCAATGTCAAGTA
TCCCATTGAAGGGACAGTGTTTTTGGCTCCCAATCTTGAAAAGAATGGAGATTATTACAAGAATC
GATGCTTGTCTTTTTTAGGGGATGAACATTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCC
ATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCTAATCACAA
AATGAATGAAGATCATTACTATGTTTGTCCCATTTGAGGCATGAACTTAGACCATACAAAAATTG
GTGGGAAAAAGGCCTTTCTTGGGAA
Found at i:100550 original size:158 final size:159
Alignment explanation
Indices: 100377--103686 Score: 633
Period size: 158 Copynumber: 21.0 Consensus size: 159
100367 GAAAAAGGCC
*
100377 TTTCATGCGAAACCAAAACATCAATATTGCA-TATCCTAAAGAGAAGACAATGTTTATGGTGCCT
1 TTTCATGCGAAACCAAAACATCAATATT-CATTATCCTAATGAGAAGACAATGTTTATGGTGCCT
*
100441 AATCCAGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGGCA-AACTTT
65 AATCCAGAAAAGAATGGAGATTAGTATGAGTATTCATGTTTGTCTTATTT-AGAGGCAGAACTTT
*
100505 GATTCTATCAAAAACGGGGGAAAGAAAAG-T
129 GATTCTATCAAAAATGGGGGAAAGAAAAGAT
* * * * * * * * * *
100535 TTTCTTGCGATACCAAAGCATCAAT-GTCAAGTATTCTATTGA-AGGGACAGTGTTTTTGGCT-C
1 TTTCATGCGAAACCAAAACATCAATATTC-ATTATCCTAATGAGA-AGACAATGTTTATGG-TGC
* ** * * * * * *
100597 CCAATCTTGAAAAGAATGGAGATT-GTTACGAG-AATCGATGCTTGTTTTTTTTAG-GGGATGAA
63 CTAATCCAGAAAAGAATGGAGATTAG-TATGAGTATTC-ATGTTTGTCTTATTTAGAGGCA-GAA
* ** ** *
100659 CTTTGATTTTATGGAAAATAAGGCAAAGAAAAGAT
125 CTTTGATTCTATCAAAAATGGGGGAAAGAAAAGAT
* * ** * *
100694 TTCCATGCAAAAAGAAAATCATCAATA-TCATTTCTCCTAATGAG--G--AATGTGCTTATAGTG
1 TTTCATGCGAAACCAAAA-CATCAATATTCA-TTATCCTAATGAGAAGACAATGT--TTATGGTG
* * * * **
100754 -CTAATCACA-AAATGAAT---GA--AG-ATCATTACT-ATGTTTGTCCCATTT-GAGGCATGAA
62 CCTAATC-CAGAAAAGAATGGAGATTAGTATGAGTATTCATGTTTGTCTTATTTAGAGGCA-GAA
* * * **
100809 CTTAGA--CCATACAAAAATTGGTGGG-AA-AAAGGCC
125 CTTTGATTCTAT-CAAAAA-TGG-GGGAAAGAAAAGAT
* * ** * * *
100843 TTTCTTGGGAAACCAAAACATCAATA-TCGCGTATGCC-AAAGGGAAGACTATGTTTATGGTGCC
1 TTTCATGCGAAACCAAAACATCAATATTC-ATTAT-CCTAATGAGAAGACAATGTTTATGGTGCC
* * * ** *
100906 TAATCCTA-AAAAGAATGAAGGTTAGTTTGACCATTCATGTCTGTCTTATTCTTAGA--CA-AAC
64 TAATCC-AGAAAAGAATGGAGATTAGTATGAGTATTCATGTTTGTCTTA-T-TTAGAGGCAGAAC
*
100967 TTTGATTCTACCAAAAATGGGGGAAAGAAAAG-T
126 TTTGATTCTATCAAAAATGGGGGAAAGAAAAGAT
* * * * * * * ** *
101000 TTTCTTGCGACACCAAAGCATCAAT-GTCTAGTATCCTATTGA-AGGGACTGTGTTTTTGGCT-C
1 TTTCATGCGAAACCAAAACATCAATATTC-ATTATCCTAATGAGA-AGACAATGTTTATGG-TGC
** * * * * * * *
101062 CTAATCTTGAAAAGAATGGAGATTATTACGAG-AATCAATGCTTGTCTT-TTTTGTGGGATGAAC
63 CTAATCCAGAAAAGAATGGAGATTAGTATGAGTATTC-ATGTTTGTCTTATTTAGAGGCA-GAAC
* ** ** *
101125 TTTGATTTTATGGAAAATAAGGCAAAGAAAAGAT
126 TTTGATTCTATCAAAAATGGGGGAAAGAAAAGAT
* * ** * * * *
101159 TTCCAT-CCAAAAGAAAATTATCATTA-TCATTTCTCCTAATGAG--G--AATGTGCTT-TGATG
1 TTTCATGCGAAACCAAAA-CATCAATATTCA-TTATCCTAATGAGAAGACAATGT--TTATGGTG
* * * * * * * **
101217 -CTAATCACA-AAATGAATGAAGATCATTACT-AGAATCCATGTTTGCCCCATTT-GAGGCATGA
62 CCTAATC-CAGAAAAGAATGGAGATTAGTA-TGAGTATTCATGTTTGTCTTATTTAGAGGCA-GA
* * * **
101278 ACTTAGACTT-TA-CAAAAATTAGTGGG-AA-AAAGGCC
124 ACTTTGA-TTCTATCAAAAA-T-GGGGGAAAGAAAAGAT
*
101313 TTTCATGCGAAACCAAAACATCAATATTGCA-TATCCAAATGAGAAGACAATGTTTATGGTGCCT
1 TTTCATGCGAAACCAAAACATCAATATT-CATTATCCTAATGAGAAGACAATGTTTATGGTGCCT
*
101377 AATCCAGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGGCA-AACTTT
65 AATCCAGAAAAGAATGGAGATTAGTATGAGTATTCATGTTTGTCTTATTT-AGAGGCAGAACTTT
*
101441 GATTCTATCAAAAACGGGGGAAAGAAAAG-T
129 GATTCTATCAAAAATGGGGGAAAGAAAAGAT
* * * * * * * * * *
101471 TTTCTTGCGATACCAAAGCATCAAT-GTCAAGTATTCTATTGA-AGGGACAGTGTTTTTGGCT-C
1 TTTCATGCGAAACCAAAACATCAATATTC-ATTATCCTAATGAGA-AGACAATGTTTATGG-TGC
** * * * *
101533 CTAATCTTGAAAAGAATGGAGATT-GTTACGAG-AATCGATGCTTGTCTCT-TTTAG-GGGATGA
63 CTAATCCAGAAAAGAATGGAGATTAG-TATGAGTATTC-ATGTTTGTCT-TATTTAGAGGCA-GA
* *** * *
101594 ACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
124 ACTTTGATTCTATCAAAAATGGGGGAAAGAAAAGAT
* ** * * * * *
101630 TTTCGTGC-AAAAGAAAATCATCAATA-TCATTTTGCCCAACGAG--G--AATGTGCTTATAGTA
1 TTTCATGCGAAACCAAAA-CATCAATATTCATTAT-CCTAATGAGAAGACAATGT--TTATGGTG
* * * * * * * **
101689 CCTAATCACA-AAATGAATGAAGATCATTACT-AGAATCCAAGTTTGTCCCATTT-GAGGCATGA
62 CCTAATC-CAGAAAAGAATGGAGATTAGTA-TGAGTATTCATGTTTGTCTTATTTAGAGGCA-GA
* * * **
101751 ACTTAGACTT-TA-CAAAAATTGGTGCG-AA-AAATGCC
124 ACTTTGA-TTCTATCAAAAA-TGG-GGGAAAGAAAAGAT
* * * * **
101786 TTTC-TGGCGAAACTAAAGCATCAATA-TCGTGTATCCTGATGAGAAGA-ACATGTTTACAGTGC
1 TTTCAT-GCGAAACCAAAACATCAATATTCAT-TATCCTAATGAGAAGACA-ATGTTTATGGTGC
* * * **
101848 CTAATCCAGAAAAGAATATG-GATTAGTTTGACTATTCATGTTTGTCTTATTTAAGAGATA-AAC
63 CTAATCCAGAAAAGAAT-GGAGATTAGTATGAGTATTCATGTTTGTCTTATTT-AGAGGCAGAAC
* * ** *
101911 ATTGATTCTATCAAAAACGATGGAAAGAAAAGCT
126 TTTGATTCTATCAAAAATGGGGGAAAGAAAAGAT
** * * * * *
101945 TTTCATGCGACCCCAAAGCGTCAAT-GTCAAGTATCCTAATGAAGAA-A-ATATGTTT-TAGGTT
1 TTTCATGCGAAACCAAAACATCAATATTC-ATTATCCTAATG-AGAAGACA-ATGTTTAT-GGTG
* * * * ** * *
102006 CCTAAACCTA-AAAATG-ATGGTGATT-G-CTGCAAG-AATCGATGCCTATCTTATTTA-AGGGA
62 CCTAATCC-AGAAAA-GAATGGAGATTAGTATG--AGTATTC-ATGTTTGTCTTATTTAGAGGCA
* *** * * *
102065 TGAACATTT-ATTATAAGGAAAATAGGGCAAAAAAAAGAT
122 -GAAC-TTTGATTCTATCAAAAATGGGGGAAAGAAAAGAT
* ** * * * *
102104 TTCCATGC-AAAAGAAAATCGTCAATA-TCATTTATCCTAGTGAG--GAGAATGTGCTTATAGTG
1 TTTCATGCGAAACCAAAA-CATCAATATTCA-TTATCCTAATGAGAAGACAATGT--TTATGGTG
* ** * * * *
102165 CCTAATTACA-AAATTAAT-GACGATTATTACT-AGAATCCATGTTTGTCTCATTTA-AGGCACG
62 CCTAA-TCCAGAAAAGAATGGA-GATTAGTA-TGAGTATTCATGTTTGTCTTATTTAGAGGCA-G
* * ** **
102226 GACTTAGACTT-TA-CAAAAATTGGTGGG-AA-AATTGCC
123 AACTTTGA-TTCTATCAAAAA-TGG-GGGAAAGAAAAGAT
* *
102262 TTTCATGCGAAACCAAAACATCAATA-TCACGTATCCTAATGAGAAGACTATGTTTATGGTGCCT
1 TTTCATGCGAAACCAAAACATCAATATTCA-TTATCCTAATGAGAAGACAATGTTTATGGTGCCT
* * ** * * * *
102326 AATCCTGAAAAGAATGGGGATTTTTCA-AACTATTCATGTTTGTCATATTTGAGAGACA-AACTT
65 AATCCAGAAAAGAATGGAGATTAGT-ATGAGTATTCATGTTTGTCTTATTT-AGAGGCAGAACTT
* * * * * * *
102389 TGGTCCCACCAAAAACGGTGGAAAGAAAAGTT
128 TGATTCTATCAAAAATGGGGGAAAGAAAAGAT
* * * * * ** * *
102421 TTTCTTGCGACACCAAAGCATCAAT-GTCATGTATCCT-AT-TGAAGGGAATGTGCTTTTGGTAC
1 TTTCATGCGAAACCAAAACATCAATATTCAT-TATCCTAATGAGAAGACAATGT--TTATGGTGC
* ** * ** ** * * * *
102483 CCAATCTTGGAAAGAATGGAGATTCTTGCGAG-AATCGATGCTTGTCTTTTTTA-AGGGATGAAC
63 CTAATCCAGAAAAGAATGGAGATTAGTATGAGTATTC-ATGTTTGTCTTATTTAGAGGCA-GAAC
* *** * * *
102546 TTTGATTTTAAGGAAAATAGAGCAAAGAAAAGAT
126 TTTGATTCTATCAAAAATGGGGGAAAGAAAAGAT
* * ** * * *
102580 TTTGATG-TAAATGAAAATCATCAATA-TCATTTCTCCTAATGAG--GAGAATGTGCTTATAGTG
1 TTTCATGCGAAACCAAAA-CATCAATATTCA-TTATCCTAATGAGAAGACAATGT--TTATGGTG
* * * * * * * * *
102641 CCTAATCACA-AAATGAATGAAGATCATTACT-AGAATCCATGTTTGTCTCATTT-TAGGCATTA
62 CCTAATC-CAGAAAAGAATGGAGATTAGTA-TGAGTATTCATGTTTGTCTTATTTAGAGGCA-GA
* * * *
102703 ACATAGACTT-TA-CAAAAATTGGTGGG-AA-AAATGCT
124 ACTTTGA-TTCTATCAAAAA-TGG-GGGAAAGAAAAGAT
* * ** * * *
102738 TTTCTTGCAAAACCAAAACATCAATA-TCGCGTACCCTAACGAGAAAACTAA-GTTTATGGTGCC
1 TTTCATGCGAAACCAAAACATCAATATTC-ATTATCCTAATGAGAAGAC-AATGTTTATGGTGCC
** *
102801 TAATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTA-AGAG-AGAAACT
64 TAATCCAGAAAAGAATGGAGATTAGTATGAGTATTCATGTTTGTCTTATTTAGAG-GCAG-AACT
* * *
102864 TTGATTTTATCAAAAACGGGAGAAAGAAAAG-T
127 TTGATTCTATCAAAAATGGGGGAAAGAAAAGAT
* * * * * * * * * *
102896 TTTCTTGCGACACCAAAGCATC-AT-TGTCATGTATCTTATTGA-AGGGCCGATATTTTTGGCT-
1 TTTCATGCGAAACCAAAACATCAATAT-TCAT-TATCCTAATGAGA-AGACAATGTTTATGG-TG
* ** * * * ** * * *
102957 CCCAATCTTGAAAAGAATGCAGATTATTA-CAAAAATCGATGCTTGTCTTATTTA-AGGGATGAA
62 CCTAATCCAGAAAAGAATGGAGATTAGTATGAGTATTC-ATGTTTGTCTTATTTAGAGGCA-GAA
* * * * *
103020 CTTTTATTTTA-CGGAAAATAGGGCAAAGAAAAGAT
125 CTTTGATTCTATC-AAAAATGGGGGAAAGAAAAGAT
* ** * * * * * *
103055 TTCCATGC-AAAAGAAAATCACCAATA-TCATTTATCATAGTGAG--GAGAATGTGCTTATAGCG
1 TTTCATGCGAAACCAAAA-CATCAATATTCA-TTATCCTAATGAGAAGACAATGT--TTATGGTG
* * * * * * * *
103116 CCTAATCACA-AAATGAAT-GACGATCATTACT-AGAATCCATGTTTATCTCATTT-GAGGCACA
62 CCTAATC-CAGAAAAGAATGGA-GATTAGTA-TGAGTATTCATGTTTGTCTTATTTAGAGGCA-G
* ** ** **
103177 AACTTAGACTT-TA-CAAAAATTAGTAGG-AA-AATTGCC
123 AACTTTGA-TTCTATCAAAAA-T-GGGGGAAAGAAAAGAT
* * ** * * **
103213 TTTCTTGCTAAACCAAAACATCAATA-TCGCGTATGCTAATGAGAAGACAATGTTTATAGTTTCT
1 TTTCATGCGAAACCAAAACATCAATATTC-ATTATCCTAATGAGAAGACAATGTTTATGGTGCCT
* * * * * *
103277 AATCCTGAAAAGAATGG-GTATTAGTGTGACTATTCATGTTTGGCTTGTTTAAGAGACA-AACTT
65 AATCCAGAAAAGAATGGAG-ATTAGTATGAGTATTCATGTTTGTCTTATTT-AGAGGCAGAACTT
* **
103340 TGATTCTATCAAAAAAGATGGAAAGAAAAGCAT
128 TGATTCTATCAAAAATGGGGGAAAGAAAAG-AT
* * * * * * * *
103373 TTCCA-GGGACACCAAAGCATTAAT-GTCATGTATCCTAA-GA-AAGGA-AATGTGTTTTAGGTT
1 TTTCATGCGAAACCAAAACATCAATATTCAT-TATCCTAATGAGAA-GACAATGT-TTAT-GGTG
* * * * * *
103433 CCTAATCCTA-AAAACAATGGAGATT-GTTACGAG-AATCGAGGCTTGTCTTATTTA-AGGGATG
62 CCTAATCC-AGAAAAGAATGGAGATTAG-TATGAGTATTC-ATGTTTGTCTTATTTAGAGGCA-G
* * **
103494 AA-TTTACACTT-TA-CAAAAATTGGTGGG---GAAATTGCC
123 AACTTT-GA-TTCTATCAAAAA-TGG-GGGAAAGAAA-AGAT
* * ** * **
103530 TTTCTTGTGAAACCAAAACATCAAT-TTCGCGTATCCTAATGAGACGATTATGTTTATGGTGCCT
1 TTTCATGCGAAACCAAAACATCAATATTC-ATTATCCTAATGAGAAGACAATGTTTATGGTGCCT
* * * * *
103594 AATCCTA-AAAGGAATGGGGATTAGTATGACTATTCATGTTTGTCTTTTTTAAGAGTCA-AACTT
65 AATCC-AGAAAAGAATGGAGATTAGTATGAGTATTCATGTTTGTCTTATTT-AGAGGCAGAACTT
* * **
103657 TGATTCCATCAAAAACGGTAGAAAGAAAAG
128 TGATTCTATCAAAAATGGGGGAAAGAAAAG
103687 CTTCTCTTGC
Statistics
Matches: 2215, Mismatches: 655, Indels: 563
0.65 0.19 0.16
Matches are distributed among these distances:
148 18 0.01
149 23 0.01
150 34 0.02
151 18 0.01
152 6 0.00
153 1 0.00
154 35 0.02
155 68 0.03
156 73 0.03
157 281 0.13
158 891 0.40
159 648 0.29
160 113 0.05
161 5 0.00
162 1 0.00
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.31
Consensus pattern (159 bp):
TTTCATGCGAAACCAAAACATCAATATTCATTATCCTAATGAGAAGACAATGTTTATGGTGCCTA
ATCCAGAAAAGAATGGAGATTAGTATGAGTATTCATGTTTGTCTTATTTAGAGGCAGAACTTTGA
TTCTATCAAAAATGGGGGAAAGAAAAGAT
Found at i:102298 original size:476 final size:473
Alignment explanation
Indices: 100002--103495 Score: 4489
Period size: 476 Copynumber: 7.4 Consensus size: 473
99992 TGTCATCACC
* * * *
100002 ATTCATGTCTGTCTTATTCT--TAGACAAACTTTGATTCTACCAAAAATGGGGGAAAGAAAAGTT
1 ATTCATGTTTGTCTTATT-TAAGAGACAAACTTTGATTCTATCAAAAACGGGGGAAAGAAAAGTT
* * *
100065 TTCTTGCGACACCAAAGCATCAATGTCTAGTATCCTATTGAAGGGACTGTGTTTTTGGCTCCTAA
65 TTCTTGCGACACCAAAGCATCAATGTCAAGTATCCTATTGAAGGAAATGTGTTTTTGGCTCCTAA
** * **
100130 TCTTGAAAAGAACAGAGATTATTACGAGAATCGATGCTTGTCTTTTTTGTGGGATGAACTTTGAT
130 TCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGAT
* * * * * *
100195 TTTATGGAAAATAAGGCAAAGAAAAGATTTCCATCCAAAAGAAAAACATCATTACCATTTCTCCT
195 TTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCT
100260 AATGAGGAATGTGCTT-T-GATG-CTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
260 AATGAGGAATGTGCTTATAG-TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
* * *
100322 TTGCCCCATTTGAGGCATGAACTTAGACTTTACAAAAATTAGTGGGAAAAAGGCCTTTCATGCGA
324 TTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCATGCGA
* * *
100387 AACCAAAACATCAATATTGCATATCCTAAAGAGAAGACAATGTTTATGGTGCCTAATCCAGAAAA
389 AACCAAAACATCAATATCGCGTATCCTAATGAGAAGACAATGTTTATGGTGCCTAATCCAGAAAA
*
100452 GAATGGGGATTAGTATGAGT
454 GAATGGGGATTAGTATGACT
*
100472 ATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAACGGGGGAAAGAAAAGTTT
1 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGGGGAAAGAAAAGTTT
* * * *
100537 TCTTGCGATACCAAAGCATCAATGTCAAGTATTCTATTGAAGGGACA-GTGTTTTTGGCTCCCAA
66 TCTTGCGACACCAAAGCATCAATGTCAAGTATCCTATTGAA-GGAAATGTGTTTTTGGCTCCTAA
* *
100601 TCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTTTTTTTTAGGGGATGAACTTTGAT
130 TCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGAT
* *
100666 TTTATGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAAGAAAATCATCAATATCATTTCTCC
195 TTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGC-AAAAGAAAATCATCAATATCATTTCTCC
100731 TAATGAGGAATGTGCTTATAGTG-CTAATCACAAAATGAATGAAGATCATTAC-----T--ATGT
259 TAATGAGGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
** * * *
100788 TTGTCCCATTTGAGGCATGAACTTAGACCATACAAAAATTGGTGGGAAAAAGGCCTTTCTTGGGA
324 TTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCATGCGA
* * *
100853 AACCAAAACATCAATATCGCGTATGCC-AAAGGGAAGACTATGTTTATGGTGCCTAATCCTA-AA
389 AACCAAAACATCAATATCGCGTAT-CCTAATGAGAAGACAATGTTTATGGTGCCTAATCC-AGAA
* * *
100916 AAGAATGAAGG-TTAGTTTGACC
452 AAGAATG-GGGATTAGTATGACT
* * * *
100938 ATTCATGTCTGTCTTATTCT--TAGACAAACTTTGATTCTACCAAAAATGGGGGAAAGAAAAGTT
1 ATTCATGTTTGTCTTATT-TAAGAGACAAACTTTGATTCTATCAAAAACGGGGGAAAGAAAAGTT
* * *
101001 TTCTTGCGACACCAAAGCATCAATGTCTAGTATCCTATTGAAGGGACTGTGTTTTTGGCTCCTAA
65 TTCTTGCGACACCAAAGCATCAATGTCAAGTATCCTATTGAAGGAAATGTGTTTTTGGCTCCTAA
* * **
101066 TCTTGAAAAGAATGGAGATTATTACGAGAATCAATGCTTGTCTTTTTTGTGGGATGAACTTTGAT
130 TCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGAT
* * * * *
101131 TTTATGGAAAATAAGGCAAAGAAAAGATTTCCATCCAAAAGAAAATTATCATTATCATTTCTCCT
195 TTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCT
101196 AATGAGGAATGTGCTT-T-GATG-CTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
260 AATGAGGAATGTGCTTATAG-TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
* * *
101258 TTGCCCCATTTGAGGCATGAACTTAGACTTTACAAAAATTAGTGGGAAAAAGGCCTTTCATGCGA
324 TTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCATGCGA
* * *
101323 AACCAAAACATCAATATTGCATATCCAAATGAGAAGACAATGTTTATGGTGCCTAATCCAGAAAA
389 AACCAAAACATCAATATCGCGTATCCTAATGAGAAGACAATGTTTATGGTGCCTAATCCAGAAAA
*
101388 GAATGGGGATTAGTATGAGT
454 GAATGGGGATTAGTATGACT
*
101408 ATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAACGGGGGAAAGAAAAGTTT
1 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGGGGAAAGAAAAGTTT
* * *
101473 TCTTGCGATACCAAAGCATCAATGTCAAGTATTCTATTGAAGGGACA-GTGTTTTTGGCTCCTAA
66 TCTTGCGACACCAAAGCATCAATGTCAAGTATCCTATTGAA-GGAAATGTGTTTTTGGCTCCTAA
* *
101537 TCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTCTTTTAGGGGATGAACTTTGAT
130 TCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGAT
* *
101602 TTTAAGGAAAATAGGGCAAAGAAAAGATTTTCGTGCAAAAGAAAATCATCAATATCATTT-TGCC
195 TTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCT-CC
* * * *
101666 CAACGAGGAATGTGCTTATAGTACCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAGT
259 TAATGAGGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
*
101731 TTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGCGAAAAATGCCTTTC-TGGCG
324 TTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCAT-GCG
* * * * **
101795 AAACTAAAGCATCAATATCGTGTATCCTGATGAGAAGA-ACATGTTTACAGTGCCTAATCCAGAA
388 AAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACA-ATGTTTATGGTGCCTAATCCAGAA
** *
101859 AAGAATATGGATTAGTTTGACT
452 AAGAATGGGGATTAGTATGACT
* * **
101881 ATTCATGTTTGTCTTATTTAAGAGATAAACATTGATTCTATCAAAAACGATGGAAAGAAAAGCTT
1 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGGGGAAAGAAAAG-TT
* * * * * * * *
101946 TTCATGCGACCCCAAAGCGTCAATGTCAAGTATCCTAATGAAGAAAATATGTTTTAGGTTCCTAA
65 TTCTTGCGACACCAAAGCATCAATGTCAAGTATCCTATTGAAGGAAATGTGTTTTTGGCTCCTAA
* * * * * * * * * *
102011 ACCTAAAAATG-ATGGTGATTGCTGCAAGAATCGATGCCTATCTTATTTAAGGGATGAACATTT-
130 TCTTGAAAA-GAATGGAGATTGTTACGAGAATCGATGCTTGTCTTTTTTAAGGGATGAAC-TTTG
* * * *
102074 ATTATAAGGAAAATAGGGCAAAAAAAAGATTTCCATGCAAAAGAAAATCGTCAATATCATTTATC
193 ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTC
* * * * *
102139 CTAGTGAGGAGAATGTGCTTATAGTGCCTAATTACAAAATTAATGACGATTATTACTAGAATCCA
258 CTAATGA-G-GAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA
* * * * *
102204 TGTTTGTCTCATTTAAGGCACGGACTTAGACTTTACAAAAATTGGTGGGAAAATTGCCTTTCATG
321 TGTTTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCATG
* * *
102269 CGAAACCAAAACATCAATATCACGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGA
386 CGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACAATGTTTATGGTGCCTAATCCAGA
** *
102334 AAAGAATGGGGATTTTTCA-AACT
451 AAAGAATGGGGATTAGT-ATGACT
* * * * * * *
102357 ATTCATGTTTGTCATATTTGAGAGACAAACTTTGGTCCCACCAAAAACGGTGGAAAGAAAAGTTT
1 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGGGGAAAGAAAAG-TT
* * * *
102422 TTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGCTTTTGG-TACCCA
65 TTCTTGCGACACCAAAGCATCAATGTCAAGTATCCTATTGAAGGAAATGTGTTTTTGGCT-CCTA
* * *
102486 ATCTTGGAAAGAATGGAGATTCTTGCGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGA
129 ATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGA
* ** * *
102551 TTTTAAGGAAAATAGAGCAAAGAAAAGATTTTGATGTAAATGAAAATCATCAATATCATTTCTCC
194 TTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCC
102616 TAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
259 TAATGA-G-GAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
* * * * * *
102681 GTTTGTCTCATTTTAGGCATTAACATAGACTTTACAAAAATTGGTGGGAAAAATGCTTTTCTTGC
322 GTTTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCATGC
* * * * **
102746 AAAACCAAAACATCAATATCGCGTACCCTAACGAGAAAACTAA-GTTTATGGTGCCTAATCTTGA
387 GAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGAC-AATGTTTATGGTGCCTAATCCAGA
*
102810 AAAGAATGGGGATTAGTATGAGT
451 AAAGAATGGGGATTAGTATGACT
* * *
102833 ATTCATGTTTGTCTTATTTAAGAGAGAAACTTTGATTTTATCAAAAACGGGAGAAAGAAAAGTTT
1 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGGGGAAAGAAAAGTTT
* * * *** * *
102898 TCTTGCGACACCAAAGCATCATTGTCATGTATCTTATTGAAGG-GCCGATATTTTTGGCTCCCAA
66 TCTTGCGACACCAAAGCATCAATGTCAAGTATCCTATTGAAGGAAATG-TGTTTTTGGCTCCTAA
* * * * * *
102962 TCTTGAAAAGAATGCAGATTATTACAAAAATCGATGCTTGTCTTATTTAAGGGATGAACTTTTAT
130 TCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGAT
* * * *
103027 TTTACGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCACCAATATCATTTATCAT
195 TTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCT
* * *
103092 AGTGAGGAGAATGTGCTTATAGCGCCTAATCACAAAATGAATGACGATCATTACTAGAATCCATG
260 AATGA-G-GAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* * ** * * * * *
103157 TTTATCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTAGTAGGAAAATTGCCTTTCTTGCT
323 TTTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCATGCG
* * ** *
103222 AAACCAAAACATCAATATCGCGTATGCTAATGAGAAGACAATGTTTATAGTTTCTAATCCTGAAA
388 AAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACAATGTTTATGGTGCCTAATCCAGAAA
* *
103287 AGAATGGGTATTAGTGTGACT
453 AGAATGGGGATTAGTATGACT
* * * ** *
103308 ATTCATGTTTGGCTTGTTTAAGAGACAAACTTTGATTCTATCAAAAAAGATGGAAAGAAAAGCAT
1 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGGGGAAAGAAAAG-TT
** * * * * * *
103373 TTCCAGGGACACCAAAGCATTAATGTCATGTATCCTA-AGAAAGGAAATGTGTTTTAGGTTCCTA
65 TTCTTGCGACACCAAAGCATCAATGTCAAGTATCCTATTG-AAGGAAATGTGTTTTTGGCTCCTA
* * * * *
103437 ATCCTAAAAACAATGGAGATTGTTACGAGAATCGAGGCTTGTCTTATTTAAGGGATGAA
129 ATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTTTTTAAGGGATGAA
103496 TTTACACTTT
Statistics
Matches: 2640, Mismatches: 332, Indels: 98
0.86 0.11 0.03
Matches are distributed among these distances:
462 1 0.00
463 32 0.01
464 45 0.02
465 189 0.07
466 149 0.06
467 6 0.00
468 2 0.00
469 7 0.00
470 166 0.06
471 413 0.16
472 50 0.02
473 262 0.10
474 163 0.06
475 425 0.16
476 727 0.28
477 3 0.00
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (473 bp):
ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGGGGAAAGAAAAGTTT
TCTTGCGACACCAAAGCATCAATGTCAAGTATCCTATTGAAGGAAATGTGTTTTTGGCTCCTAAT
CTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATT
TTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTA
ATGAGGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
GTCCCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCATGCGAAA
CCAAAACATCAATATCGCGTATCCTAATGAGAAGACAATGTTTATGGTGCCTAATCCAGAAAAGA
ATGGGGATTAGTATGACT
Found at i:104625 original size:473 final size:475
Alignment explanation
Indices: 103705--107854 Score: 4961
Period size: 473 Copynumber: 8.8 Consensus size: 475
103695 GCGACACCTA
* *
103705 ATTTAAGGGATGAACTTTGATTTTATGGAAACTAAGGCAAAGAAAAGATTTCCATGCAAAAGAAA
1 ATTTAAGGGATGAACTTTGATTTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
*
103770 ATCATCAATATCATTTCTCCTA-AA-GAGGAATGTGCTTATAGTGCCTAATCACAAAATGATTGA
66 ATCATCAATATCATTTCTCCTATAAGGA-GAATGTGCTTATAGTGCCTAATCACAAAATGAATGA
*
103833 AGATCATTACTAGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGT
130 AGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGT
* * * * * * * * * *
103898 GCGTAAAATGCCTTTATGGCGAAACTAAAGCATCAATATCGTGTATCATGATGAGAAGAAC-ATG
195 GGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAG-ACTAAG
* * ** *
103962 TTTACGGTGCCTAATCCAGAAAAGAATATGGATTAGTTTGACTATTCATGTTTGTCTTATTTAAG
259 TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAG
* * * * * **
104027 AGACAAACATTGATTCTATTAAAAATAGTGGAAAGAAAAGCTTTTCATGC-AGCACCAAAAAATC
324 AGACAAACTTTGATTCCATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGA-CACCAAAGCATC
* * * * * * * * * * *
104091 AATGTCAAGTATCCTAATGAAGGAAATATATTTTAGGTTCCTAATCCTAAAAATG-ATGGAGACT
388 AATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTACCCAATCTTGAAAA-GAATGGAGATT
* * * * *
104155 GCTACAAGAATTGATGCCTATCTT
452 GTTACGAGAATCGATGCTTGTCTT
* * *
104179 ATTTAAGGGATGAACTTTGATTATAAGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
1 ATTTAAGGGATGAACTTTGATTTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
* * * * *
104244 ATCATCAATATCATTTATACTAGCAAGGAGAACGTGCTTATAGTGCCTAATCAC-AAATTAATGA
66 ATCATCAATATCATTTCTCCTA-TAAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGA
* * * * *
104308 CGATCAATACTAGAATCCATGTTTGTCTCATTTAAGGCACGGACTTAGACTTTACAAAAATTGGT
130 AGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGT
* * * * *
104373 GAGAAAATTTCCTTTCTTGCGATACCAAAACATCAATATC-CGTATCCTAATGAGAAGACTAGGT
195 GGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTAAGT
* * *
104437 TTATGGTGCC-AATCCTGAAAAGAATGGAGATTTGTATGACTATTCATATTTGTCTTATTTAAGA
260 TTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGA
* *
104501 GACAAACTTTGATTCCATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGATATCAAAGCATCAA
325 GACAAACTTTGATTCCATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAA
* * * * *
104566 TTTCATGTATCCTATTGAAAGGAATGTGCTTTTGGTACCCAATCTTGGAAACAATGGAGATTGTT
390 TGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGATTGTT
* * *
104631 GCGAGAATCAATGCTTGCCTT
455 ACGAGAATCGATGCTTGTCTT
* * * * ** *
104652 TTTTAAGGGATGAAGTTTGATTTTAAGGAAAATAGAGCAAAGAAAAGATTTTGATACAAAAGAAA
1 ATTTAAGGGATGAACTTTGATTTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
* * *
104717 ATTATCAATATCATTTCTCCTAATGAGGAGAATGTGCTTATAGTGCTTAATCACAAAATGAATGA
66 ATCATCAATATCATTTCTCCT-ATAAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGA
* **
104782 AGATCATTACTAGAATCCATGTTTGTCTCATGTGAGGCATGAACAAAGACTTTACAAAAATTGGT
130 AGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGT
* * *
104847 GGGAAAAATGCTTTTCTTGCGAAATCAAAACATCAATATCGCGTATCCTAAGGAGAAGACTAAGT
195 GGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTAAGT
* *
104912 TTATGGTGCCTAATCTTGAAAAGAAT---G----G---G--TATTCATGTTTGTCTTATTTAAAA
260 TTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGA
* *** * * * *
104965 GAGAAACTTTGATTTTGTCAAAAACGGGGGAAAGAAAAG-TTTTCTTGCAACACCAAAGCATCAT
325 GACAAACTTTGATTCCATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAA
* * *
105029 TGTCATGTATCCTATTGAAGGGACA-GTGTTTTTGGCT-CCCAATCTTGAAGAGAGTGCAGATTG
390 TGTCATGTATCCTATTGAAGGGA-ATGTGTTTTTGG-TACCCAATCTTGAAAAGAATGGAGATTG
* *
105092 TTATGAGAATCGATGCTTGCCTT
453 TTACGAGAATCGATGCTTGTCTT
** * * * *
105115 ATTTGGGGGATGAACTTTGATTTTATTGAAAATAAGGCAAAGAAAAGATATCCGTGCAAAAGAAA
1 ATTTAAGGGATGAACTTTGATTTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
* * * * * *
105180 AACATCAATATCATTTCT-CT-TAATGAGGAATATGCTTATTGTACCTAATCACAAAATGATTGA
66 ATCATCAATATCATTTCTCCTATAAGGA-GAATGTGCTTATAGTGCCTAATCACAAAATGAATGA
* *
105243 AGATCATTACTAGAATCCATGTTTGTCCCATTTGAGGTATGAACTTAGACTTTACAAAAATTGGT
130 AGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGT
* * * * * * *
105308 GGGAAAAAGGCCTTTCTTGCGAAACCAAAACTTCAATATCCCGTATCCTAAAGGGACGACTATGT
195 GGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTAAGT
* * * * * *
105373 TTATAGTGCCCAATCCTAAAAAGAATGAGGG-TTAGTTTGACCATTCATGTTTGTGTTATTCT--
260 TTATGGTGCCTAATCCTGAAAAGAATG-GGGATTAGTATGACTATTCATGTTTGTCTTATT-TAA
* *
105435 TAGACAAA-TCATGATTCCATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAT
323 GAGACAAACT-TTGATTCCATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAT
** * *
105499 CAATGTCATGTATCCTATAAAAGGGAATGTGTTTTTGGTACCGAATCTTGAAAAGAATGTAGATT
387 CAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGATT
* *
105564 GTTACGAGAATCAATGCTTATCTT
452 GTTACGAGAATCGATGCTTGTCTT
* * * *
105588 ATTTAAGGGATGAACTTTAATTTTATGGAAAATAAGGTAAAGAAAAGATATCCATGCAAAAGAAA
1 ATTTAAGGGATGAACTTTGATTTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
* * * *
105653 ATCATCAATATCATTTCTCC--TAATGAGGAAGGTGCTTATAGTGCCTAATCAAAAAATAAATGA
66 ATCATCAATATCATTTCTCCTATAAGGA-GAATGTGCTTATAGTGCCTAATCACAAAATGAATGA
* * ****
105716 AGATCATTACTAGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAAGTCAAA
130 AGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGT
* * *
105781 GGGAAAAATGCTTTTCTTTCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGGCTAAGT
195 GGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTAAGT
* ** * ** * *
105846 TTATAGCACCTAATCTTGAAAAGAATGGGGATTAGTATGGGTATTCATGTTTGTTTTATTTGAGA
260 TTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGA
** * *
105911 GACAAACTTTGATT-CAGTCAAAAATGGAGGAAAGAAAAG-TTTTCTTGCGACACCAAAGCGTC-
325 GACAAACTTTGATTCCA-TCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCA
* * *
105973 A----ATGTATCCTATTGATGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGT
389 ATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGATTGT
* *
106034 TACAAGAATTGATGCTTGTCTT
454 TACGAGAATCGATGCTTGTCTT
* * * *
106056 ATTTAAGAGATAAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCAAGCAAAA-CA
1 ATTTAAGGGATGAACTTTGATTTTATGGAAAAT-AGGGCAAAGAAAAGATTTCCATGCAAAAGAA
* *
106120 AATCATCAATATCATTTATCCTAATGAGGA-AATTGTGCTTATAGTGCCTAATCACAAAATGAAT
65 AATCATCAATATCATTTCTCCT-ATAAGGAGAA-TGTGCTTATAGTGCCTAATCACAAAATGAAT
* * ** * *
106184 GAAGATCATTACTAGAATCTATGATTGTCTCATTTGACCCATTAACTTAGACTTTACAAAAATTA
128 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTG
* * * *
106249 GT-GGAAAAATGCCTTTCTTACGAAACCAAGACATAAATATCGCGTATCCTAATAAGAAGACTAA
193 GTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTAA
*
106313 GTTTATGGTGCCTAATCCTGAAAGGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAA
258 GTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAA
** * * *
106378 GAGACAAACTTTGATTCCATCAAAAATTGTGGAAGGAAAAGCTTTTCATGGGACACCAAAGCATC
323 GAGACAAACTTTGATTCCATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
* * *
106443 -A--T--TGTATCCTATTGATGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTG
388 AATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGATTG
106503 TTACGAGAATCGATGCTTGTCTT
453 TTACGAGAATCGATGCTTGTCTT
* * * *
106526 ATTTAAGGGATGAGCTTTGATTATAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAA
1 ATTTAAGGGATGAACTTTGATTTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
* * * * * * *
106591 ATCATCAATATCATTTATCCTAGTGAGGAGAATGCGCTCATAGCGCCTGATCACAAAATTAATGA
66 ATCATCAATATCATTTCTCCTA-TAAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGA
* *
106656 CA-ATCACTACTAGAATCCATGTTTGTTTCA-TTGAAGGCATGAACTTAGACTTTACAAAAATTG
130 -AGATCATTACTAGAATCCATGTTTGTCTCATTTG-AGGCATGAACTTAGACTTTACAAAAATTG
* * * *
106719 GTGGGAAAATTGCCTTTCTTACAAAACCAAAACATCAATATCACGTA-CCTTAATGAGAAGACTA
193 GTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCC-TAATGAGAAGACTA
* * * *
106783 TGTTTATTGTGCCTAATCCTGAAAAGAATGGGGATTTGTATGACTATTCATGTTTGTCTTAATTA
257 AGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTA
* ** *
106848 AGAGACAAACTTTAATTCCATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGATACCAAAGCAT
322 AGAGACAAACTTTGATTCCATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAT
* * * *
106913 TAATGTCATGTATCCTATTGAAGGGAATGTGCTTTTGGAACCCAATCTTGGAAAGAATGGAGATT
387 CAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGATT
** *
106978 GTTGTGAGAATCGATGCTTATCCTT
452 GTTACGAGAATCGATGCTTGT-CTT
* * * ** *
107003 -TTTAAGGGATGAACTTTGATTTTAAGG-AAATAGAGCAAAGGAAAGATTTTGAT-AAAAAGAAA
1 ATTTAAGGGATGAACTTTGATTTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
* * * *
107065 ATCATCCATATCATTGCTCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCATAAAATGAATGA
66 ATCATCAATATCATTTCTCCT-ATAAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGA
*
107130 AGATCAATACTAGAATCCATGTTTG-------T----C-T---C----A--TTACAAAAATTGGT
130 AGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGT
* *
107174 GGG-AAAATGCTTTTCTTGCGAAACCAAAACA-CTAATATCACGTATCCTAATGAGAAGACTAAA
195 GGGAAAAATGCCTTTCTTGCGAAACCAAAACATC-AATATCGCGTATCCTAATGAGAAGACT-AA
* *
107237 GTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGATTGTCTTATTTAA
258 GTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAA
* * * * * *
107302 GAGACAAACATTGATTCTATCATAAACGGGGGGAA-AAAAG-TTTTCTTGCGACACCAAAGCATC
323 GAGACAAACTTTGATTCCATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
* * * *
107365 GACGCCATGTATCCTATTGAAGGGATTGTGTTTTT-G-ACTCTCAATCTTGAAAAGAATGGAGAT
388 AATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTAC-C-CAATCTTGAAAAGAATGGAGAT
* *
107428 TGTTACGAGAATTGATGCTTGTTTT
451 TGTTACGAGAATCGATGCTTGTCTT
* * * *
107453 ATTTAGGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGGTTTCCATGCAAAAAAAA
1 ATTTAAGGGATGAACTTTGATTTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
* *
107518 ATCATCAATATCTTTTCTCC--TAATGAGGAATGTGCTTATAGTGCCTAATCACAAAATGAATGA
66 ATCATCAATATCATTTCTCCTATAAGGA-GAATGTGCTTATAGTGCCTAATCACAAAATGAATGA
* * *
107581 AGATCATTACTAAAATCCATGTTTGCCTCATTTGAGGCATGAACTTAGATTTTACAAAAATTGGT
130 AGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGT
* * * * * *
107646 GGGAAAAAGGCCTTTCATGCGAAACCAAAACATCAATATTGCGTATCCTTATGAGAAAACTATGT
195 GGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTAAGT
* * * * *
107711 TTATGATGCTTAATCTTCAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAAA
260 TTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGA
* *
107776 GACAAACTTTGATTCCACCAAAAACAGTGGAAAGGAAAGCTTTTCTTGCGACACCAAAGCATCAA
325 GACAAACTTTGATTCCATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAA
*
107841 TGTCGTGTATCCTA
390 TGTCATGTATCCTA
107855 ATGAGAAGAT
Statistics
Matches: 3152, Mismatches: 431, Indels: 186
0.84 0.11 0.05
Matches are distributed among these distances:
449 2 0.00
450 8 0.00
451 174 0.06
452 73 0.02
453 132 0.04
455 1 0.00
458 1 0.00
459 1 0.00
460 4 0.00
461 169 0.05
462 4 0.00
463 162 0.05
464 57 0.02
465 1 0.00
466 2 0.00
468 124 0.04
469 204 0.06
470 326 0.10
471 180 0.06
472 143 0.05
473 728 0.23
474 362 0.11
475 155 0.05
476 134 0.04
477 5 0.00
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.31
Consensus pattern (475 bp):
ATTTAAGGGATGAACTTTGATTTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
ATCATCAATATCATTTCTCCTATAAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAA
GATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTG
GGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTAAGTT
TATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAG
ACAAACTTTGATTCCATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAAT
GTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGATTGTTA
CGAGAATCGATGCTTGTCTT
Found at i:107839 original size:159 final size:156
Alignment explanation
Indices: 107184--110842 Score: 903
Period size: 159 Copynumber: 23.2 Consensus size: 156
107174 GGGAAAATGC
* * ** *
107184 TTTTCTTGCGAAACCAAAACA-CTAATATCACGTATCCTAATGAGAAGACTAAAGTTTATGGTGC
1 TTTTCTTGCGACACCAAAGCATC-AATATCGTGTATCCTAATGAGAAGACT-ATGTTTATGGTGC
* * * *
107248 CTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGATTGTCTTATTTAAGAGACAAACAT
64 CTAAT-CTAAAAAGAATGGGGATTAGTATGA-TATTCATGTTTGTCTTATTTAAAAGACAAACTT
* * ** * *
107313 TGATTCTATCATAAACGGGGGGAA-AAAAG
127 TGATTCCATCAAAAATAGTGGAAAGAAAAG
* *** * * * * *
107342 TTTTCTTGCGACACCAAAGCATCGACGCCATGTATCCTATTGA-AGGGATTGTGTTT-T--TGAC
1 TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGA-AGACTATGTTTATGGTG-C
* * * * * * * *** **
107403 TCTCAATCTTGAAAAGAATGGAGATT-GTTACGAGAATTGATGCTTGTTTTATTTAGGGGATGAA
64 -CT-AATC-TAAAAAGAATGGGGATTAG-TATGA-TATTCATGTTTGTCTTATTTAAAAGACAAA
** ** *
107467 CTTTGATTTTATGGAAAATAAG-GCAAAGAAAAGG
124 CTTTGATTCCATCAAAAAT-AGTGGAAAGAAAA-G
* * * * ** * * * * * * * *
107501 TTTCCATGCAAAAAAAAATCATCAATATCTTTTCTCCTAATGAG--GAATGTGCTTATAGTGCCT
1 TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCT
** * * * * * * * * *
107564 AATC-ACAAAATGAATGAAGATCATTACTAAAATCCATGTTTGCCTCATTT--GAGGCATGAACT
66 AATCTA-AAAA-GAATGGGGATTAGTA-TGATATTCATGTTTGTCTTATTTAAAAGACA--AACT
* ** * * *
107626 TAGATTTTA-CAAAAATTGGTGGGAA-AAAGG
126 TTGATTCCATCAAAAA-TAGTGGAAAGAAAAG
* * * * * * * * * *
107656 CCTTTCATGCGAAACCAAAACATCAATATTGCGTATCCTTATGAGAAAACTATGTTTATGATGCT
1 -TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
*
107721 TAATCTTCAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAAAGACAAACTTT
65 TAATC-TAAAAAGAATGGGGATTAGTATGA-TATTCATGTTTGTCTTATTTAAAAGACAAACTTT
* * *
107786 GATTCCACCAAAAACAGTGGAAAGGAAAG
128 GATTCCATCAAAAATAGTGGAAAGAAAAG
* * *
107815 CTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAATGAGAAGATTAAGTTTATGGTGCC
1 -TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
* * * * * * * *
107880 TAATGCTAAAAAGAATGGGGATTAGTTTGAGTATTCAAGTTCGTCTTATTTGAGAGGCAAGCATT
65 TAAT-CTAAAAAGAATGGGGATTAGTATGA-TATTCATGTTTGTCTTATTTAAAAGACAAACTTT
* *
107945 GATTCTATCAAAAATAGGGGAAAGAAAAG
128 GATTCCATCAAAAATAGTGGAAAGAAAAG
* * * *** * ** * *
107974 TTTTCTTACAACACCAAAGCATCAATGTTAAGTATCCT-ATTA-AAGGGTCAGTGTTTTTGGCTT
1 TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACT-A-TGTTTATGG-TG
* * * * * * * * **
108037 CC-AATCTTGAAATGAATGGAGATT-GTTACGAGAATCGATGCTTGTCTT-TTTAAGGAGATGAA
63 CCTAATC-TAAAAAGAATGGGGATTAG-TATGATATTC-ATGTTTGTCTTATTTAA-AAGACAAA
** * *
108099 CTTTGATTTTATGAAAAATAAG-GCAAAGAAAAG
124 CTTTGATTCCATCAAAAAT-AGTGGAAAGAAAAG
* * * * ** * * * * * * * * *
108132 ATTTCAATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAG--GAATGTGCTTATAGTGTC
1 TTTTC-TTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
** * * * * * ** *
108195 TAATC-ACAAAATGAATGAAGATCATTACTAGA-ATCCAGGTTTATCCCATTT--AAGGCATGAA
65 TAATCTA-AAAA-GAATGGGGATTAGTA-T-GATATTCATGTTTGTCTTATTTAAAAGACA--AA
* * * *
108256 CTTAGACTT-TA-CAAAAATTGGTGGGAAA-AAAGG
124 CTTTGA-TTCCATCAAAAA-TAGT-GGAAAGAAAAG
* * * * * ** * * **
108289 CCTTTCTTGCGAAATCAAAACATCAGTATCGCATATCCTACTGATAAGACTATGTTTATGGCACC
1 -TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
* * * * *
108354 TAATCCTGAAAAGAATGGGGATTAGTATGACTATTCAAGTTTGTTTTATTTTAGAGACAAACTTT
65 TAAT-CTAAAAAGAATGGGGATTAGTATGA-TATTCATGTTTGTCTTATTTAAAAGACAAACTTT
** *
108419 GATTCCATCAAAAACGGTGGAAAGGAAAG
128 GATTCCATCAAAAATAGTGGAAAGAAAAG
* * ** * *
108448 CTTTTCTTGTGACATCAAAGCATCAAGGTCGTGTATCCTAATAAGAAGACTAAGTTTATGGTGCC
1 -TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
* * *
108513 TAATCATAAAAAAAATGGGGATAAGTATGAGTATTCATGTTTTTCTTATTTAAAAGACAAACTTT
65 TAATC-TAAAAAGAATGGGGATTAGTATGA-TATTCATGTTTGTCTTATTTAAAAGACAAACTTT
* *
108578 GATTCCATAAAAAATAGGGGAAAGAAAAG
128 GATTCCATCAAAAATAGTGGAAAGAAAAG
* * *** * * *** *
108607 TTTTCTTGCGACACCAAAGCATAAATGTTAAGTATCCTATTGATG-GGACGGGGTTTTTGGCT-C
1 TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGA-GAAGACTATGTTTATGG-TGC
* * * * * * * ** ***
108670 CCAATCTTGAAAAGAATGGAGATT-GT-TGCGAGAATCGATGCTTGTCTTATTTTAGGGTTGAAC
64 CTAATC-TAAAAAGAATGGGGATTAGTAT--GATATTC-ATGTTTGTCTTATTTAAAAGACAAAC
*** ** *
108733 TTTGATTTTGTGGAAAATAAG-GCAAAGAAAAG
125 TTTGATTCCATCAAAAAT-AGTGGAAAGAAAAG
* * * * ** * * * * * * * ** * *
108765 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAGTGAGGAGAATGTGCCTATAGCGCC
1 -TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
* * ** * * * * * * *
108830 TAATC-ACAAAATTATTGATGATCATTACTAGA-ATCCATGTTTGTCTCATTTAAGACACGAACT
65 TAATCTA-AAAA-GAATGGGGATTAGTA-T-GATATTCATGTTTGTCTTATTTAAAAGACAAACT
* * * **
108893 TAGACTT-TA-CAAAAATTAGTGGGAA-AATTG
126 TTGA-TTCCATCAAAAA-TAGTGGAAAGAAAAG
* * ** * *
108923 CCTTTT-TTGC-AAATCCAAAACATCAATATCACGTATCCTAATGGGAAGACTTTGTTTATGGTG
1 --TTTTCTTGCGACA-CCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTG
* * * * *
108986 CCTAATCTTGAAAAGAATGGGGATTTGTATGGCTCTTCATGTTTGTCTTATTTAAGAGACAAACT
63 CCTAATC-TAAAAAGAATGGGGATTAGTAT-GATATTCATGTTTGTCTTATTTAAAAGACAAACT
* * **
109051 TTGATTTCTTCAAAAACGGTGGAAAGAAAAG
126 TTGATTCCATCAAAAATAGTGGAAAGAAAAG
* * * * * * * *
109082 CTTTTCCTGCGACACCAAAGCAACAATGTCATGTATCCTATTGA-AAGGAATGTGCTTT-TGGTA
1 -TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAA-GACTATG-TTTATGGTG
* ** ** * * * * * * ** **
109145 CCCAATCTTGGAAAGGGTGGAGATT-GT-TGCGAGAATTGAGGCTTGTCTTTTTTAAGGGATGAA
63 CCTAATC-TAAAAAGAATGGGGATTAGTAT--GA-TATTCATGTTTGTCTTATTTAAAAGACAAA
** *** * *
109208 CTTTGATTTTAAGGAAAATAGAGCAAAGAAAAG
124 CTTTGATTCCATCAAAAATAGTGGAAAGAAAAG
** * * ** * * * * * * * * **
109241 ATTTTGATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAGAATGTGCTTATAATGCC
1 -TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
** * * * * ** *
109306 TAAT-TACAAAATGAATGAAGATCATTACTAGA-ATCCATGTTTATCTTATTT--GCGGCAAGAA
65 TAATCTA-AAAA-GAATGGGGATTAGTA-T-GATATTCATGTTTGTCTTATTTAAAAGAC-A-AA
* ** *
109367 C-TT-AGTCTTTACAAAAATTAGTAGG-AA-AAATG
124 CTTTGATTCCAT-CAAAAA-TAGT-GGAAAGAAAAG
** * * * *
109399 CTTTTCTTATGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTAAGTTTATGGTGCC
1 -TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
* *
109464 TAATCATGAAAAA-AATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTT
65 TAATC-T-AAAAAGAATGGGGATTAGTATGA-TATTCATGTTTGTCTTATTTAAAAGACAAACTT
* * * * *
109528 TGATTCGATCATAAA-CGGGGAAAAAAAAG
127 TGATTCCATCAAAAATAGTGGAAAGAAAAG
* ** * * * * *
109557 TTTTCTTGCGACACGAAAGCATCAACGTCATGTATCCTATTGA-AGGGAC-AGTGTTTTTGACT-
1 TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGA-AGACTA-TGTTTATG-GTG
* * * ** * * * * * *** **
109619 CCCACTCTTGAAAAGAATGGACATT-GTTACGAGAAGTGATGCTTGTCTTATTTAGGGGATGAAC
63 CCTAATC-TAAAAAGAATGGGGATTAG-TATGA-TATTCATGTTTGTCTTATTTAAAAGACAAAC
* ** *
109683 TTTGACTT-TATGGAAAATAAG-GCAAAGAAAAGG
125 TTTGA-TTCCATCAAAAAT-AGTGGAAAGAAAA-G
* * * * ** ** * * * * * * * *
109716 TTTCCATGCAAAAGAAAATTATCAATATCATTTCTCCTAATGAG--GAATGTGCTTGTAGTGCCT
1 TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCT
* * * * *** *
109779 AATC-ACAAAATGAATGAAGGTCATTACTA-GA-ATCCATGTTTGTCTCA--GGCATG---AACT
66 AATCTA-AAAA-GAATG--GG-GATTAGTATGATATTCATGTTTGTCTTATTTAAAAGACAAACT
* * * * *
109836 TAGACTT-TA-CAAAAAATTGGTGGGAA-AAAGG
126 TTGA-TTCCATC-AAAAA-TAGTGGAAAGAAAAG
* * * * * * * *
109867 CCTTTCATGCGAAACCAAAACATCAATATTGCGTATCCTAATGAGAAAACTATGTTTATGATGCC
1 -TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
* * *
109932 TAATCTTTAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTTTTATTTAAAAGACAAACATT
65 TAATC-TAAAAAGAATGGGGATTAGTATGA-TATTCATGTTTGTCTTATTTAAAAGACAAACTTT
* ** * *
109997 GATTCCACCAAAAACGGTGGAATGGAAAG
128 GATTCCATCAAAAATAGTGGAAAGAAAAG
* * * *
110026 CTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAATAAGAAGATTAAGTTTATGGTGCC
1 -TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
** * * * * *
110091 TAATCCTGGAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGGCAAGCTTC
65 TAAT-CTAAAAAGAATGGGGATTAGTATGA-TATTCATGTTTGTCTTATTTAAAAGACAAACTTT
* ** *
110156 GATTCTATCAAAAACGGGGGAAAGAAAAG
128 GATTCCATCAAAAATAGTGGAAAGAAAAG
* * * *** * * * *
110185 TTTTCTTCCAACACCAAAGCATCAATGTTAAGTATCCTATTGA-AGGGAC-ATTGTTTTTGGCTT
1 TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGA-AGACTA-TGTTTATGG-TG
* * * * * * * * ** **
110248 CC-AATGTTGAAATGAATGGAGATT-GTTACGAGAATCGATGCTTGTCTT-TTTAAGGGGATGAA
63 CCTAAT-CTAAAAAGAATGGGGATTAG-TATGATATTC-ATGTTTGTCTTATTTAA-AAGACAAA
** ** *
110310 CTTTGATTTTATGGAAAATAAG-GCAAAGAAAAG
124 CTTTGATTCCATCAAAAAT-AGTGGAAAGAAAAG
* * * * ** * * * * * * * * *
110343 ATTTCAATGCAAAAGAAAATCATCAATATCATTTCTCCTTATGAG--GAATGTGCTTATAGTGCC
1 TTTTC-TTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
** * * * * * ** *
110406 TAATC-ACAAAATGAATGAAGATCATTACTAGA-ATCCAGGTTTATCCCATTT--AAGGCATGAA
65 TAATCTA-AAAA-GAATGGGGATTAGTA-T-GATATTCATGTTTGTCTTATTTAAAAGACA--AA
* * * * *
110467 CTTAGACTT--TTCAAAAATTGGTGGGAA-AAAGG
124 CTTTGA-TTCCATCAAAAA-TAGTGGAAAGAAAAG
* * * * *** * *
110499 CCTTTCATGCGAAACCAAAACATCAATATCACATATCCTAATGATAAGGCTATGTTTATGGTGCC
1 -TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
* * *
110564 TAATCATGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTTTTATTTAAGAGACAAACTTT
65 TAATC-TAAAAAGAATGGGGATTAGTATGA-TATTCATGTTTGTCTTATTTAAAAGACAAACTTT
* *
110629 GATTCCATCAAAAACAGTGGAAAGGAAAG
128 GATTCCATCAAAAATAGTGGAAAGAAAAG
* ** * *
110658 CTTTTCTTGTGACACCAAAGCATCAAGGTCGTGTATCCTAATAATAAGACTATGTTTATGGTGCC
1 -TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
* * * * *
110723 TAATCCTAAAAAAAATAGGGG-TAACTATGAGTATTCATGTTTGTCTTATTCAAAAGACAAACAT
65 TAAT-CTAAAAAGAAT-GGGGATTAGTATGA-TATTCATGTTTGTCTTATTTAAAAGACAAACTT
* * *** *
110787 TGATTCCTTTAAAAGCGGGGGAAAGAAAAG
127 TGATTCCATCAAAAATAGTGGAAAGAAAAG
110817 TTTTCTTGCGACACCAAAGCATCAAT
1 TTTTCTTGCGACACCAAAGCATCAAT
110843 GTCAAGTATC
Statistics
Matches: 2496, Mismatches: 807, Indels: 396
0.67 0.22 0.11
Matches are distributed among these distances:
151 7 0.00
152 56 0.02
153 4 0.00
154 36 0.01
155 12 0.00
156 131 0.05
157 406 0.16
158 756 0.30
159 1014 0.41
160 63 0.03
161 9 0.00
162 2 0.00
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.31
Consensus pattern (156 bp):
TTTTCTTGCGACACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCT
AATCTAAAAAGAATGGGGATTAGTATGATATTCATGTTTGTCTTATTTAAAAGACAAACTTTGAT
TCCATCAAAAATAGTGGAAAGAAAAG
Found at i:108626 original size:633 final size:628
Alignment explanation
Indices: 107182--109121 Score: 2686
Period size: 633 Copynumber: 3.1 Consensus size: 628
107172 GTGGGAAAAT
* * * **
107182 GCTTTTCTTGCGAAACCAAAACA-CTAATATCACGTATCCTAATGAGAAGACTAAAGTTTATGGT
1 GCTTTTCTTGCGACACCAAAGCATC-AATGTCGTGTATCCTAATGAGAAGACT-AAGTTTATGGT
* *
107246 GCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGATTGTCTTATTTAAGAGACAAAC
64 GCCTAAT-CTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAAC
* ** * * * ** *
107311 ATTGATTCTATCATAAACGGGGGGAA-AAAAGTTTTCTTGCGACACCAAAGCATCGACGCCATGT
128 ATTGATTCTATCAAAAATAGGGGAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTTAAGT
* *
107375 ATCCTATTGAAGGGAT-TGTGTTTTTGAC-TCTCAATCTTGAAAAGAATGGAGATTGTTACGAGA
193 ATCCTATTGAAGGG-TCAGTGTTTTTGGCTTC-CAATCTTGAAAAGAATGGAGATTGTTACGAGA
* *
107438 ATTGATGCTTGT-TTTATTTAGGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGGT
256 ATCGATGCTTGTCTTT-TTTA-GGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGAT
* *
107502 TTCCATGCAAAAAAAAATCATCAATATCTTTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAAT
319 TTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAAT
* * * *
107567 CACAAAATGAATGAAGATCATTACTAAAATCCATGTTTGCCTCATTTGAGGCATGAACTTAGATT
384 CACAAAATGAATGAAGATCATTACTAGAATCCATGTTTTCC-CATTTAAGGCATGAACTTAGACT
* * *
107632 TTACAAAAATTGGTGGGAAAAAGGCCTTTCATGCGAAACCAAAACATCAATATTGCGTATCCTTA
448 TTACAAAAATTGGTGGGAAAAAGGCCTTTCTTGCGAAATCAAAACATCAATATCGCGTATCC-TA
* * * *
107697 TGAGAAAACTATGTTTATGATGCTTAATCTTCAAAAGAATGGGGATTAGTATGACTATTCATGTT
512 TGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTCATGTT
* * *
107762 TGTCTTATTTAAAAGACAAACTTTGATTCCACCAAAAACAGTGGAAAGGAAA
577 TGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGGAAA
*
107814 GCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAATGAGAAGATTAAGTTTATGGTGC
1 GCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAATGAGAAGACTAAGTTTATGGTGC
* * * * * *
107879 CTAATGCTAAAAAGAATGGGGATTAGTTTGAGTATTCAAGTTCGTCTTATTTGAGAGGCAAGCAT
66 CTAAT-CTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACAT
* *
107944 TGATTCTATCAAAAATAGGGGAAAGAAAAGTTTTCTTACAACACCAAAGCATCAATGTTAAGTAT
130 TGATTCTATCAAAAATAGGGGAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTTAAGTAT
* *
108009 CCTATTAAAGGGTCAGTGTTTTTGGCTTCCAATCTTGAAATGAATGGAGATTGTTACGAGAATCG
195 CCTATTGAAGGGTCAGTGTTTTTGGCTTCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCG
* * *
108074 ATGCTTGTCTTTTTAAGGAGATGAACTTTGATTTTATGAAAAATAAGGCAAAGAAAAGATTTCAA
260 ATGCTTGTCTTTTTTAGG-GATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCCA
*
108139 TGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGTCTAATCACAA
324 TGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAATCACAA
*
108204 AATGAATGAAGATCATTACTAGAATCCAGGTTTATCCCATTTAAGGCATGAACTTAGACTTTACA
389 AATGAATGAAGATCATTACTAGAATCCATGTTT-TCCCATTTAAGGCATGAACTTAGACTTTACA
* * *
108269 AAAATTGGTGGGAAAAAAGGCCTTTCTTGCGAAATCAAAACATCAGTATCGCATATCCTACTGAT
453 AAAATTGGTGGG-AAAAAGGCCTTTCTTGCGAAATCAAAACATCAATATCGCGTATCCTA-TGAG
** * * *
108334 AAGACTATGTTTATGGCACCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCAAGTTTGTT
516 AAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTC
*
108399 TTATTTTAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGGAAA
581 TTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGGAAA
* * * *
108447 GCTTTTCTTGTGACATCAAAGCATCAAGGTCGTGTATCCTAATAAGAAGACTAAGTTTATGGTGC
1 GCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAATGAGAAGACTAAGTTTATGGTGC
* * * * *
108512 CTAATCATAAAAAAAATGGGGATAAGTATGAGTATTCATGTTTTTCTTATTTAAAAGACAAACTT
66 CTAATC-TAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACAT
* * *
108577 TGATTCCATAAAAAATAGGGGAAAGAAAAGTTTTCTTGCGACACCAAAGCATAAATGTTAAGTAT
130 TGATTCTATCAAAAATAGGGGAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTTAAGTAT
* * * * * *
108642 CCTATTGATGGGACGGGGTTTTTGGCTCCCAATCTTGAAAAGAATGGAGATTGTTGCGAGAATCG
195 CCTATTGAAGGGTCAGTGTTTTTGGCTTCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCG
* *
108707 ATGCTTGTCTTATTTTAGGGTTGAACTTTGATTTTGTGGAAAATAAGGCAAAGAAAAGATTTCCA
260 ATGCTTGTCTT-TTTTAGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCCA
* * * *
108772 TGCAAAAGAAAATCATCAATATCATTTATCCTAGTGAGGAGAATGTGCCTATAGCGCCTAATCAC
324 TGCAAAAGAAAATCATCAATATCATTTCTCCTAATGA-G-GAATGTGCTTATAGTGCCTAATCAC
* * * * * *
108837 AAAATTATTGATGATCATTACTAGAATCCATGTTTGTCTCATTTAAGACACGAACTTAGACTTTA
387 AAAATGAATGAAGATCATTACTAGAATCCATGTTT-TCCCATTTAAGGCATGAACTTAGACTTTA
* ** * *
108902 CAAAAATTAGTGGGAAAATTGCCTTTTTTGC-AAATCCAAAACATCAATATCACGTATCCTAATG
451 CAAAAATTGGTGGGAAAAAGGCCTTTCTTGCGAAAT-CAAAACATCAATATCGCGTATCCT-ATG
* * * * *
108966 GGAAGACTTTGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTTGTATGGCTCTTCATGTTTG
514 AGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTG
* * *
109031 TCTTATTTAAGAGACAAACTTTGATTTCTTCAAAAACGGTGGAAAGAAAA
579 TCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGGAAA
* * *
109081 GCTTTTCCTGCGACACCAAAGCAACAATGTCATGTATCCTA
1 GCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTA
109122 TTGAAAGGAA
Statistics
Matches: 1156, Mismatches: 137, Indels: 28
0.88 0.10 0.02
Matches are distributed among these distances:
631 92 0.08
632 320 0.28
633 472 0.41
634 179 0.15
635 93 0.08
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (628 bp):
GCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAATGAGAAGACTAAGTTTATGGTGC
CTAATCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACATT
GATTCTATCAAAAATAGGGGAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTTAAGTATC
CTATTGAAGGGTCAGTGTTTTTGGCTTCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGA
TGCTTGTCTTTTTTAGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCCATG
CAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAATCACAAAA
TGAATGAAGATCATTACTAGAATCCATGTTTTCCCATTTAAGGCATGAACTTAGACTTTACAAAA
ATTGGTGGGAAAAAGGCCTTTCTTGCGAAATCAAAACATCAATATCGCGTATCCTATGAGAAGAC
TATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATT
TAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGGAAA
Found at i:109214 original size:476 final size:470
Alignment explanation
Indices: 108480--110065 Score: 2060
Period size: 476 Copynumber: 3.4 Consensus size: 470
108470 TCAAGGTCGT
* * *
108480 GTATCCTAATAAGAAGACTAAGTTTATGGTGCCTAATCATAAAAAAAATGGGGATAAGTATGAGT
1 GTATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCATGAAAAAAATGGGGATTAGTATGAGT
* * *
108545 ATTCATGTTTTTCTTATTTAAAAGACAAACTTTGATTCCATAAAAAATAGGGGAAAGAAAAGTTT
66 ATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCCATCAAAAA-CGGGGAAAGAAAAGTTT
* * * * *
108610 TCTTGCGACACCAAAGCATA-AATGTTAAGTATCCTATTGATGGGACGGGGTTTTTGGCTCCCAA
130 TCTTGCGACACCAAAGCA-ACAATGTCATGTATCCTATTGAAGGGA-AGTGTTTTTGG-TCCCAA
* *
108674 TCTTGAAAAGAATGGAGATTGTTGCGAGAATCGATGCTTGTCTTATTTT-AGGGTTGAACTTTGA
192 TCTTGAAAAGAATGGAGATTGTTGCGAGAATTGATGCTTGTCTT-TTTTAAGGGATGAACTTTGA
* *
108738 TTTTGTGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCC
256 TTTTATGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCC
* * * * * *
108803 TAGTGAGGAGAATGTGCCTATAGCGCCTAATCACAAAATTATTGATGATCATTACTAGAATCCAT
321 TAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
* * *
108868 GTTTGTCTCATTTAAGACACGAACTTAGACTTTACAAAAATTAGTGGGAAAATTGCCTTTTTTGC
386 GTTTGTCTCATTT-AGGCAAGAACTTAGACTTTACAAAAATTAGTGGGAAAAATGCCTTTTTTGC
*
108933 AAATCCAAAACATCAATATCAC
450 AAA-CCAAAACATCAATATCGC
* ** * * *
108955 GTATCCTAATGGGAAGACTTTGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTTGTATG-GC
1 GTATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCATGAAAAAAATGGGGATTAGTATGAG-
* * * *
109019 TCTTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTCTTCAAAAACGGTGGAAAGAAAAGCT
65 TATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCCATCAAAAACGG-GGAAAGAAAAG-T
* * *
109084 TTTCCTGCGACACCAAAGCAACAATGTCATGTATCCTATTGAAAGGAATGTGCTTTTGGTACCCA
128 TTTCTTGCGACACCAAAGCAACAATGTCATGTATCCTATTGAAGGGAA-GTGTTTTTGGT-CCCA
* ** *
109149 ATCTTGGAAAGGGTGGAGATTGTTGCGAGAATTGAGGCTTGTCTTTTTTAAGGGATGAACTTTGA
191 ATCTTGAAAAGAATGGAGATTGTTGCGAGAATTGATGCTTGTCTTTTTTAAGGGATGAACTTTGA
* **
109214 TTTTAAGGAAAAT-AGAGCAAAGAAAAGATTTTGATGCAAAAGAAAATCATCAATATCATTTCTC
256 TTTTATGGAAAATAAG-GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTC
* *
109278 CTAATGAGGAGAATGTGCTTATAATGCCTAATTACAAAATGAATGAAGATCATTACTAGAATCCA
320 CTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA
* * * * * *
109343 TGTTTATCTTATTTGCGGCAAGAACTTAGTCTTTACAAAAATTAGTAGGAAAAATGCTTTTCTTA
385 TGTTTGTCTCATTT-AGGCAAGAACTTAGACTTTACAAAAATTAGTGGGAAAAATGCCTTT-TT-
109408 TG-AAACCAAAACATCAATATCGC
447 TGCAAACCAAAACATCAATATCGC
*
109431 GTATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCATGAAAAAAATGGGGATTAGTGTGAGT
1 GTATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCATGAAAAAAATGGGGATTAGTATGAGT
* * * *
109496 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCGATCATAAACGGGGAAAAAAAAGTTTT
66 ATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCCATCAAAAACGGGGAAAGAAAAGTTTT
* * * * *
109561 CTTGCGACACGAAAGCATCAACGTCATGTATCCTATTGAAGGGACAGTGTTTTTGACTCCCACTC
131 CTTGCGACACCAAAGCAACAATGTCATGTATCCTATTGAAGGGA-AGTGTTTTTG-GTCCCAATC
* * * * * *
109626 TTGAAAAGAATGGACATTGTTACGAGAAGTGATGCTTGTCTTATTTAGGGGATGAACTTTGACTT
194 TTGAAAAGAATGGAGATTGTTGCGAGAATTGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTT
* *
109691 TATGGAAAATAAGGCAAAGAAAAGGTTTCCATGCAAAAGAAAATTATCAATATCATTTCTCCTAA
259 TATGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAA
* *
109756 TGA-G-GAATGTGCTTGTAGTGCCTAATCACAAAATGAATGAAGGTCATTACTAGAATCCATGTT
324 TGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTT
* * * **
109819 TGTCTC----AGGCATGAACTTAGACTTTACAAAAAATTGGTGGGAAAAAGGCCTTTCATGCGAA
389 TGTCTCATTTAGGCAAGAACTTAGACTTTAC-AAAAATTAGTGGGAAAAATGCCTTTTTTGC-AA
*
109880 ACCAAAACATCAATATTGC
452 ACCAAAACATCAATATCGC
* * * * * * *
109899 GTATCCTAATGAGAAAACTATGTTTATGATGCCTAATCTTTAAAAGAATGGGGATTAGTATGACT
1 GTATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCATGAAAAAAATGGGGATTAGTATGAGT
* * * * *
109964 ATTCATGTTTGTTTTATTTAAAAGACAAACATTGATTCCACCAAAAACGGTGGAATGGAAAGCTT
66 ATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCCATCAAAAACGG-GGAAAGAAAAG-TT
* *
110029 TTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTA
129 TTCTTGCGACACCAAAGCAACAATGTCATGTATCCTA
110066 ATAAGAAGAT
Statistics
Matches: 966, Mismatches: 126, Indels: 43
0.85 0.11 0.04
Matches are distributed among these distances:
466 2 0.00
467 18 0.02
468 142 0.15
469 8 0.01
470 36 0.04
472 59 0.06
473 1 0.00
474 175 0.18
475 128 0.13
476 389 0.40
477 6 0.01
478 2 0.00
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.31
Consensus pattern (470 bp):
GTATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCATGAAAAAAATGGGGATTAGTATGAGT
ATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCCATCAAAAACGGGGAAAGAAAAGTTTT
CTTGCGACACCAAAGCAACAATGTCATGTATCCTATTGAAGGGAAGTGTTTTTGGTCCCAATCTT
GAAAAGAATGGAGATTGTTGCGAGAATTGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTA
TGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATG
AGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG
TCTCATTTAGGCAAGAACTTAGACTTTACAAAAATTAGTGGGAAAAATGCCTTTTTTGCAAACCA
AAACATCAATATCGC
Found at i:110756 original size:632 final size:627
Alignment explanation
Indices: 109398--110979 Score: 2368
Period size: 632 Copynumber: 2.5 Consensus size: 627
109388 TAGGAAAAAT
* * * * * *
109398 GCTTTTCTTATGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTAAGTTTATGGTGC
1 GCTTTTCTTGTGACACCAAAGCATCAATGTCGTGTATCCTAATAAGAAGACTAAGTTTATGGTGC
*
109463 CTAATCATGAAAAAAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTT
66 CTAATCCTGAAAAAAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAAC-T
* * * * * *
109528 TGATTCGATCATAAAC-GGGGAAAAAAAAGTTTTCTTGCGACACGAAAGCATCAACGTCATGTAT
130 TGATTCTATCAAAAACGGGGGAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCAAGTAT
* * * *
109592 CCTATTGAAGGGACAGTGTTTTTGACTCCCACTCTTGAAAAGAATGGACATTGTTACGAGAAGT-
195 CCTATTGAAGGGACAGTGTTTTTGGCTTCCAATCTTGAAAAGAATGGAGATTGTTACGAGAA-TC
* * *
109656 GATGCTTGTCTTATTTAGGGGATGAACTTTGACTTTATGGAAAATAAGGCAAAGAAAAGGTTTCC
259 GATGCTTGTCTTATTTAGGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCA
* *
109721 ATGCAAAAGAAAATTATCAATATCATTTCTCCTAATGAGGAATGTGCTTGTAGTGCCTAATCACA
324 ATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAATCACA
* * * *
109786 AAATGAATGAAGGTCATTACTAGAATCCATGTTTGTCTCAGGCATGAACTTAGACTTTACAAAAA
389 AAATGAATGAAGATCATTACTAGAATCCAGGTTTATCTAAGGCATGAACTTAGACTTTACAAAAA
** *
109851 ATTGGTGGGAAAAAGGCCTTTCATGCGAAACCAAAACATCAATATTGCGTATCCTAATGAGAAAA
454 ATTGGTGGGAAAAAGGCCTTTCATGCGAAACCAAAACATCAATATCACATATCCTAATGAGAAAA
* *
109916 CTATGTTTATGATGCCTAATCTTTAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTTTTAT
519 CTATGTTTATGATGCCTAATCATGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTTTTAT
* *
109981 TTAAAAGACAAACATTGATTCCACCAAAAACGGTGGAATGGAAA
584 TTAAAAGACAAACATTGATTCCACCAAAAACAGTGGAAAGGAAA
* *
110025 GCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAATAAGAAGATTAAGTTTATGGTGC
1 GCTTTTCTTGTGACACCAAAGCATCAATGTCGTGTATCCTAATAAGAAGACTAAGTTTATGGTGC
* * * *
110090 CTAATCCTGGAAAGAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGGCAAGCTT
66 CTAATCCTGAAAAAAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTT
* * *
110155 CGATTCTATCAAAAACGGGGGAAAGAAAAGTTTTCTTCCAACACCAAAGCATCAATGTTAAGTAT
131 -GATTCTATCAAAAACGGGGGAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCAAGTAT
* * *
110220 CCTATTGAAGGGACATTGTTTTTGGCTTCCAATGTTGAAATGAATGGAGATTGTTACGAGAATCG
195 CCTATTGAAGGGACAGTGTTTTTGGCTTCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCG
110285 ATGCTTGTCTT-TTTAAGGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCA
260 ATGCTTGTCTTATTT-AGGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCA
*
110349 ATGCAAAAGAAAATCATCAATATCATTTCTCCTTATGAGGAATGTGCTTATAGTGCCTAATCACA
324 ATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAATCACA
*
110414 AAATGAATGAAGATCATTACTAGAATCCAGGTTTATCCCATTTAAGGCATGAACTTAGACTTTTC
389 AAATGAATGAAGATCATTACTAGAATCCAGGTTTAT--C---TAAGGCATGAACTTAGACTTTAC
110479 -AAAAATTGGTGGGAAAAAGGCCTTTCATGCGAAACCAAAACATCAATATCACATATCCTAATGA
449 AAAAAATTGGTGGGAAAAAGGCCTTTCATGCGAAACCAAAACATCAATATCACATATCCTAATGA
* ** *
110543 TAAGGCTATGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGT
514 GAAAACTATGTTTATGATGCCTAATCATGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGT
* * *
110608 TTTATTTAAGAGACAAACTTTGATTCCATCAAAAACAGTGGAAAGGAAA
579 TTTATTTAAAAGACAAACATTGATTCCACCAAAAACAGTGGAAAGGAAA
* * *
110657 GCTTTTCTTGTGACACCAAAGCATCAAGGTCGTGTATCCTAATAATAAGACTATGTTTATGGTGC
1 GCTTTTCTTGTGACACCAAAGCATCAATGTCGTGTATCCTAATAAGAAGACTAAGTTTATGGTGC
* * * * * *
110722 CTAATCCTAAAAAAAATAGGGG-TAACTATGAGTATTCATGTTTGTCTTATTCAAAAGACAAACA
66 CTAATCCTGAAAAAAAT-GGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAAC-
* *
110786 TTGATTCCT-TTAAAAGCGGGGGAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCAAGT
129 TTGATT-CTATCAAAAACGGGGGAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCAAGT
* * * *
110850 ATCCTATTGATGGGACGGGGTTTTTGGC-TCACAATCTTGAAAAGAATGGAGATTGTTGCGAGAA
193 ATCCTATTGAAGGGACAGTGTTTTTGGCTTC-CAATCTTGAAAAGAATGGAGATTGTTACGAGAA
*
110914 TCGATGCTTGTCTTATTTAGGGGACGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTT
257 TCGATGCTTGTCTTATTTAGGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTT
110979 C
322 C
110980 GAGGAAAACA
Statistics
Matches: 859, Mismatches: 82, Indels: 23
0.89 0.09 0.02
Matches are distributed among these distances:
626 2 0.00
627 132 0.15
628 249 0.29
630 1 0.00
631 2 0.00
632 441 0.51
633 32 0.04
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.31
Consensus pattern (627 bp):
GCTTTTCTTGTGACACCAAAGCATCAATGTCGTGTATCCTAATAAGAAGACTAAGTTTATGGTGC
CTAATCCTGAAAAAAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTT
GATTCTATCAAAAACGGGGGAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCAAGTATC
CTATTGAAGGGACAGTGTTTTTGGCTTCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGA
TGCTTGTCTTATTTAGGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCAAT
GCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAATCACAAA
ATGAATGAAGATCATTACTAGAATCCAGGTTTATCTAAGGCATGAACTTAGACTTTACAAAAAAT
TGGTGGGAAAAAGGCCTTTCATGCGAAACCAAAACATCAATATCACATATCCTAATGAGAAAACT
ATGTTTATGATGCCTAATCATGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTTTTATTT
AAAAGACAAACATTGATTCCACCAAAAACAGTGGAAAGGAAA
Found at i:122964 original size:22 final size:22
Alignment explanation
Indices: 122939--122987 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
122929 AGCAAAAGTG
122939 GGAGAGAAAATTCAGTGTGAAA
1 GGAGAGAAAATTCAGTGTGAAA
* * *
122961 GGAGAGAAAATTGATTGTGAGA
1 GGAGAGAAAATTCAGTGTGAAA
122983 GGAGA
1 GGAGA
122988 AAAGAAGTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.43, C:0.02, G:0.37, T:0.18
Consensus pattern (22 bp):
GGAGAGAAAATTCAGTGTGAAA
Found at i:124967 original size:12 final size:11
Alignment explanation
Indices: 124950--125020 Score: 51
Period size: 12 Copynumber: 6.5 Consensus size: 11
124940 AAGAACAGAG
124950 AGGAGGGATGAT
1 AGGAGGGA-GAT
*
124962 AGGAGGAGAGAC
1 AGGAGG-GAGAT
124974 AGGA--GAGAT
1 AGGAGGGAGAT
*
124983 AGTA--GAGAT
1 AGGAGGGAGAT
124992 AGGAGGGATGAT
1 AGGAGGGA-GAT
*
125004 AGGAGGAGAGAC
1 AGGAGG-GAGAT
125016 AGGAG
1 AGGAG
125021 AGATAATAGA
Statistics
Matches: 49, Mismatches: 5, Indels: 10
0.77 0.08 0.16
Matches are distributed among these distances:
9 15 0.31
11 2 0.04
12 28 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.48, T:0.10
Consensus pattern (11 bp):
AGGAGGGAGAT
Found at i:124996 original size:42 final size:42
Alignment explanation
Indices: 124946--125053 Score: 189
Period size: 42 Copynumber: 2.6 Consensus size: 42
124936 GAGAAAGAAC
*
124946 AGAGAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAGTAG
1 AGAGAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAATAG
*
124988 AGATAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAATAG
1 AGAGAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAATAG
*
125030 AGAGAGGAGGGATGACAGGAGGAG
1 AGAGAGGAGGGATGATAGGAGGAG
125054 GAGAGAAGAA
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 62 1.00
ACGTcount: A:0.41, C:0.03, G:0.47, T:0.09
Consensus pattern (42 bp):
AGAGAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAATAG
Found at i:131389 original size:15 final size:15
Alignment explanation
Indices: 131369--131398 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
131359 TTACTAGTGA
131369 AAGAAGCCCATGAGG
1 AAGAAGCCCATGAGG
131384 AAGAAGCCCATGAGG
1 AAGAAGCCCATGAGG
131399 GTGGTTTGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.20, G:0.33, T:0.07
Consensus pattern (15 bp):
AAGAAGCCCATGAGG
Found at i:134059 original size:474 final size:474
Alignment explanation
Indices: 133173--136753 Score: 4688
Period size: 472 Copynumber: 7.6 Consensus size: 474
133163 TCATCAATTA
* * *
133173 CTAGAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTACAAAAAATGGTGGGAAAAAG
1 CTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAT
*
133238 GCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAAAGGGAAGACTATGTTTATGGTGC
66 GCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAAAGAGAAGACTATGTTTATGGTGC
* ** * * *
133303 TTAATCCT-AAAAAGAATGGGGGCTAGTTTGACCATTCATGTCTGTCTTATTCT--TAGACAAAC
131 CTAATCCTGAAAAA-AATGGGGATTAGTATGACCATTCATGTTTGTCTTATT-TAAGAGACAAAC
* * **
133365 TTTGATTCCTTCAAAAACGGTGGAAAGAAAAGCTTTTCTTATGACACCAAAGCATCAATGTCATG
194 TTTGATTCCATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATG
* *
133430 TATCCTATAGAAGGGATTGTGTTTTTGGTACCAAATCTTGAAAAGAATGTAGATTGTTACGAGAA
259 TATCCTATTGAAGGGAATGTGTTTTTGGTACCAAATCTTGAAAAGAATGTAGATTGTTACGAGAA
** * *
133495 TTTATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAGGGAAAATAAGGCAAAGAAAATATTT
324 TCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTT
*
133560 CCGTGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAATCA
389 CCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAATCA
*
133625 CAAAATGAATGAAAATCATTG
454 CAAAATGAATGAAGATCATTG
* *
133646 CTAGAATCCAAGTTTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAT
1 CTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAT
* * ** *
133711 GCCTTTCTTGCGAAACCAAAACATCAATATCACGCATTTTAAAGAGAATACTATGTTTATGGTGC
66 GCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAAAGAGAAGACTATGTTTATGGTGC
* * * *
133776 CTAATACTGAAAAAAATGGGGGTTAGTTTGACCATTCTTGTTTGTCTTATTTAAGAGACAAACTT
131 CTAATCCTGAAAAAAATGGGGATTAGTATGACCATTCATGTTTGTCTTATTTAAGAGACAAACTT
* * * * *
133841 TGAATCCGTCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCAATACCAAATCATCAATGTCATGTA
196 TGATTCCATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTA
* *
133906 TCCTATTGAAAGGAATGTGTTTTTGGTAGCAAATCTTGAAAAGAATGTAGATTGTTACGAGAATC
261 TCCTATTGAAGGGAATGTGTTTTTGGTACCAAATCTTGAAAAGAATGTAGATTGTTACGAGAATC
* ** *
133971 GATGCTTGTCTTATTTAGGGGATGAACTTTGATTTTTTGGAAAGTAAGGCAAAGAAAAGATTTCC
326 GATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCC
* * **
134036 ATGCAATAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGCGCCTAAAGACA
391 ATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAATCACA
* *
134101 AAATTATTGAAGATCATTAG
456 AAATGAATGAAGATCATT-G
* * *
134121 -TAGAATCCATGTTTGTCTCATTAGAGGCATGAACTTAGACTTCACAAAAATTGGTGGGAAAAAG
1 CTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAT
* * * * *
134185 GCCTTTCCTGCAAAACCAAAACATCAA-ATCGCGAATCCTAAA-AGGAAGGCTATGCTTATGGTG
66 GCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAAAGA-GAAGACTATGTTTATGGTG
* * *
134248 CCTAATCCT-AAAAAGAATGGAGG-TTAGTTTGACCATTCATGTCTGTCTTATTCT--TAGACAA
130 CCTAATCCTGAAAAA-AATGG-GGATTAGTATGACCATTCATGTTTGTCTTATT-TAAGAGACAA
* * * *
134309 ACTTTGATTCCTTGAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCA
192 ACTTTGATTCCATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCA
* * *
134374 TGTATCCTATCGAAGGGAATGTGTTTTTGGTACCAAATCCTAAAAAGAATGTAGATTGTTACGAG
257 TGTATCCTATTGAAGGGAATGTGTTTTTGGTACCAAATCTTGAAAAGAATGTAGATTGTTACGAG
*
134439 AATCGATACTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGAT
322 AATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGAT
* * *
134504 TTCCGTGCAAAAGTAAATCATTAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAAT
387 TTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAAT
*
134569 CACAAAATTAATGAAGATCATTG
452 CACAAAATGAATGAAGATCATTG
* *
134592 CTAGAATCCAAGTTTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAT
1 CTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAT
* * *
134657 GCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAAAGGGTAGACTATGTTTATGGTGC
66 GCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAAAGAGAAGACTATGTTTATGGTGC
* * * * *
134722 CTAATCGT-AAAAAGAATGGGGGTTAGTTTGACCATTCATGTCTGTCTTATTCT--TAGACAAAC
131 CTAATCCTGAAAAA-AATGGGGATTAGTATGACCATTCATGTTTGTCTTATT-TAAGAGACAAAC
* * * ** * * *
134784 ATTGATTGCATAAAAAATGGT-GAAAAAAAAGCTTTTTTTGCAACACCAAAGCATCAATGTCATG
194 TTTGATTCCATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATG
* * * *
134848 TATCCTATAGACGGGGATGTGTTTTTGGTACCAAATCTTGAAAAGAATGTAGATTGTTACAAGAA
259 TATCCTATTGAAGGGAATGTGTTTTTGGTACCAAATCTTGAAAAGAATGTAGATTGTTACGAGAA
* * *
134913 TCGATGCCTGTCTTATTTAAGGGATGAACTTTGATTTTAGGGAAAATAAGGCCAAGAAAAGATTT
324 TCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTT
* * *
134978 CCGTGCAAATGAAAATCATCAATATCATTTCACCTAATGAGGAATGTGCTTATAGTGCCTAATCA
389 CCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAATCA
* *
135043 CAAAATGAATAAAGATCATTA
454 CAAAATGAATGAAGATCATTG
* * *
135064 CTAGAATCCAAGTTTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAAATTGCTGGGAAAAAT
1 CTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAT
* * * * * *
135129 GCCTTT-TTCGTGAAACTAAAGCATCAATATCGTGTATCCTAATGAGAAGAAC-ATGTTTACGGT
66 GCCTTTCTT-GCGAAACCAAAACATCAATATCGCGTATCCTAAAGAGAAG-ACTATGTTTATGGT
* ** * * * * *
135192 GCCTAAT-CTAGAAAAGAATATGGATTAGCATGACTATTAATGTTTGTCATATTTAAGAGCCAAA
129 GCCTAATCCT-GAAAAAAATGGGGATTAGTATGACCATTCATGTTTGTCTTATTTAAGAGACAAA
* * * * *
135256 CCTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCATGCGACACCAGAGCATCAATGTCAA
193 CTTTGATTCCATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAT
* * * * * * * * *
135321 GTATCCTAATAAAGGAAATATGTTTTAGGTTCCTAATCTTGAAAATG-ATGGT-GACTGTAACGA
258 GTATCCTATTGAAGGGAATGTGTTTTTGGTACCAAATCTTGAAAA-GAAT-GTAGATTGTTACGA
* *
135384 GAATCGATGCCCT-TCTTATTTAAGGGATGAACTTTGATTATT-AGAAAAAT-AGGACAAAGAAA
321 GAATCGATG-CTTGTCTTATTTAAGGGATGAACTTTGATT-TTAAGGAAAATAAGG-CAAAGAAA
* * *
135446 AGATTTCCATGTAAAAGAAAATCATCAATATCATTTATCCTAGTGAGGAGAATGTGCTTATAGTG
383 AGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGA-G-GAATGTGCTTATAGTG
* * * *
135511 CCAAATCACAAAATTAATGACGATCATTA
446 CCTAATCACAAAATGAATGAAGATCATTG
* * *
135540 CTAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAATT
1 CTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAT
** *
135605 GCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATCAGAGGACTATGTTTATGGTGC
66 GCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAAAGAGAAGACTATGTTTATGGTGC
* * * * *
135670 CAAATCCTGAAAAGAATGGGGATTTGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACAT
131 CTAATCCTGAAAAAAATGGGGATTAGTATGACCATTCATGTTTGTCTTATTTAAGAGACAAACTT
* * *
135735 TGATTCCATCAAAAA-AGGGGGAAATAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGT
196 TGATTCCATCAAAAACA-GTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGT
* * * * * * *
135799 ATCGTATTGAAGGGAATGTGCTTTTGGTACCCAATCTTGGAAACAATGGAGATTGTTGCGAGAAT
260 ATCCTATTGAAGGGAATGTGTTTTTGGTACCAAATCTTGAAAAGAATGTAGATTGTTACGAGAAT
* * *
135864 CAATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAA-CAGAGCAAAGAAAAGATTT
325 CGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAG-GCAAAGAAAAGATTT
** * * * *
135928 TGATACAAAAGAAAATCATCAACATCATTTCTCCTAATGAGGAGAATGGGCTTATAGTGCCTATT
389 CCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGA-G-GAATGTGCTTATAGTGCCTAAT
*
135993 CACAAAATGAATGAAGATCATTA
452 CACAAAATGAATGAAGATCATTG
* * *
136016 CTAGAATCTATGTTTGTCTTATTTGAGGCATGAACTTAGACTTTAAAAAAATTGGTGGG-AAAAT
1 CTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAT
* * * *
136080 GCTTTTCTTGCGAAACCGAAACATCAATATCGCGTATCCTAATGAGAAGACTAAGTTTATGGTGC
66 GCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAAAGAGAAGACTATGTTTATGGTGC
* ** *
136145 CTAATCCT-AAAATGAAA-GGGGATTAGTAAGAGTATTCATGTTTGTCTTATTTTAGAGACAAAC
131 CTAATCCTGAAAA--AAATGGGGATTAGTATGACCATTCATGTTTGTCTTATTTAAGAGACAAAC
* *
136208 TTTGATTCTATCAAAAACAAG-GGAAAGAAAAG-TTTTCTTGCTGTCACCAAAGCATCAATGTCA
194 TTTGATTCCATCAAAAAC-AGTGGAAAGAAAAGCTTTTCTTGC-GACACCAAAGCATCAATGTCA
* * * *
136271 TGTATCCTATTGAAGGGGCA-GTGTTTTTGGCT-CCCAATCTTGAAAA-AAGTGGAGATTGTTAT
257 TGTATCCTATTGAA-GGGAATGTGTTTTTGG-TACCAAATCTTGAAAAGAA-TGTAGATTGTTAC
* * * * *
136333 GAGAATCGATGCTTGTCTTCTTTAGGGGATGAACATTGATTTTATGGAAAATAAGGCAAAGAAAC
319 GAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAA
* * *
136398 GATATCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATAAGGAATATGCTTATAGTGCCT
384 GATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCT
* *
136463 AATTACAAAATGAATGAAGATCCTTG
449 AATCACAAAATGAATGAAGATCATTG
* *
136489 CTGGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAG
1 CTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAT
* * * * * *
136554 GCTTTTCATGCGGAACCAAAACATCAACATTGCGTATCCTAATGAGAAGACTATGTTTATGGTGC
66 GCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAAAGAGAAGACTATGTTTATGGTGC
* * * * * * * *
136619 CTAATCCTGAAAAGAGTGGGGATTCGCATGACTATTCATGCTTGGCTTATTTAAGAGACAAACTA
131 CTAATCCTGAAAAAAATGGGGATTAGTATGACCATTCATGTTTGTCTTATTTAAGAGACAAACTT
* * *
136684 TGATTCCATCAAAAACAGTGGAGAGGAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTA
196 TGATTCCATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTA
136749 TCCTA
261 TCCTA
136754 ATGAGTACAC
Statistics
Matches: 2738, Mismatches: 320, Indels: 99
0.87 0.10 0.03
Matches are distributed among these distances:
471 5 0.00
472 742 0.27
473 458 0.17
474 700 0.26
475 329 0.12
476 498 0.18
477 6 0.00
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.30
Consensus pattern (474 bp):
CTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAT
GCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAAAGAGAAGACTATGTTTATGGTGC
CTAATCCTGAAAAAAATGGGGATTAGTATGACCATTCATGTTTGTCTTATTTAAGAGACAAACTT
TGATTCCATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTA
TCCTATTGAAGGGAATGTGTTTTTGGTACCAAATCTTGAAAAGAATGTAGATTGTTACGAGAATC
GATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCC
ATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAATCACA
AAATGAATGAAGATCATTG
Found at i:135264 original size:946 final size:945
Alignment explanation
Indices: 133169--136753 Score: 4671
Period size: 946 Copynumber: 3.8 Consensus size: 945
133159 GTTGTCATCA
* *
133169 ATTACTAGAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTACAAAAAATGGTGGGAA
1 ATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAA
* *
133234 AAAGGCCTTTCTT-GCGAAACCAAAACATCAATATCGCGTATCCTAAAGGGAAGACTATGTTTAT
66 AAAGGCCTTT-TTCGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTATGTTTAT
* * ** *
133298 GGTGCTTAATCCTAAAAAGAATGGGGGCTAGTTTGACCATTCATGTCTGTCTTATTCTTAGACAA
130 GGTGCCTAATCCTAAAAAGAA-AGGGATTAGTATGACCATTCATGTCTGTCTTATTCTTAGACAA
* *
133363 ACTTTGATTCCT-TCAAAAACGGTGGAAAGAAAAGCTTTTCTTATGACACCAAAGCATCAATGTC
194 ACTTTGATT-CTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTC
*
133427 ATGTATCCTATAGAAGGGATTGTGTTTTTGGTACCAAATCTTG-AAAAGAATGTAGATTGTTACG
258 ATGTATCCTAT-GAAGGGAATGTGTTTTTGGTACCAAATCTTGAAAAAGAATGTAGATTGTTACG
** * *
133491 AGAATTTATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAGGGAAAATAAGGCAAAGAAAAT
322 AGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAG
*
133556 ATTTCCGTGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTA
387 ATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTA
*
133621 ATCACAAAATGAATGAAAATCATTGCTAGAATCCAAGTTTGTCCCATTTGAGGCATGAACTTAGA
452 ATCACAAAATGAATGAAGATCATTGCTAGAATCCAAGTTTGTCCCATTTGAGGCATGAACTTAGA
* * **
133686 CTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCACGCATTTT
517 CTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCT
* * * * *
133751 AAAGAGAATACTATGTTTATGGTGCCTAATACTGAAAAA-AATGGGGGTTAGTTTGACCATTCTT
582 AAAGAGAAGACTATGTTTATGGTGCCTAATCCT-AAAAAGAATGGGGATTAGTATGACCATTCAT
* * * * *
133815 GTTTGTCTTATTTAAGAGACAAACTTTGAATCCGTCAAAAACAGTGGAAAGAAAAGCTTTTCTTG
646 GTCTGTCTTATTT-AGAGACAAACATTGATTCCATAAAAAACAGTGGAAAGAAAAGCTTTTCTTG
* * * *
133880 CAATACCAAATCATCAATGTCATGTATCCTATTGAAAGGAATGTGTTTTTGGTAGCAAATCTTGA
710 CAACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTACCAAATCTTGA
* **
133945 AAAGAATGTAGATTGTTACGAGAATCGATGCTTGTCTTATTTAGGGGATGAACTTTGATTTTTTG
775 AAAGAATGTAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAG
* *
134010 GAAAGTAAGGCAAAGAAAAGATTTCCATGC-AATAGAAAATCATCAATATCATTTCTCCTAATGA
840 GAAAATAAGGCAAAGAAAAGATTTCCGTGCAAAT-GAAAATCATCAATATCATTTCTCCTAATGA
* ** * *
134074 GGAATGTGCTTATAGCGCCTAAAGACAAAATTATTGAAGATC
904 GGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATC
* * *
134116 ATTAGTAGAATCCATGTTTGTCTCATTAGAGGCATGAACTTAGACTTCACAAAAATTGGTGGGAA
1 ATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAA
* * * * * *
134181 AAAGGCC-TTTCCTGCAAAACCAAAACATCAA-ATCGCGAATCCTAA-AAGGAAGGCTATGCTTA
66 AAAGGCCTTTTTC-GCGAAACCAAAACATCAATATCGCGTATCCTAATGA-GAAGACTATGTTTA
* * *
134243 TGGTGCCTAATCCTAAAAAGAATGGAGGTTAGTTTGACCATTCATGTCTGTCTTATTCTTAGACA
129 TGGTGCCTAATCCTAAAAAGAAAGG-GATTAGTATGACCATTCATGTCTGTCTTATTCTTAGACA
* *
134308 AACTTTGATTCCT-TGAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGT
193 AACTTTGATT-CTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGT
*
134372 CATGTATCCTATCGAAGGGAATGTGTTTTTGGTACCAAATCCT-AAAAAGAATGTAGATTGTTAC
257 CATGTATCCTAT-GAAGGGAATGTGTTTTTGGTACCAAATCTTGAAAAAGAATGTAGATTGTTAC
*
134436 GAGAATCGATACTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAA
321 GAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAA
* * *
134501 GATTTCCGTGCAAAAGTAAATCATTAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCT
386 GATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCT
*
134566 AATCACAAAATTAATGAAGATCATTGCTAGAATCCAAGTTTGTCCCATTTGAGGCATGAACTTAG
451 AATCACAAAATGAATGAAGATCATTGCTAGAATCCAAGTTTGTCCCATTTGAGGCATGAACTTAG
*
134631 ACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCC
516 ACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCC
* * * * *
134696 TAAAGGGTAGACTATGTTTATGGTGCCTAATCGTAAAAAGAATGGGGGTTAGTTTGACCATTCAT
581 TAAAGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACCATTCAT
* * ** * *
134761 GTCTGTCTTATTCT-TAGACAAACATTGATTGCATAAAAAATGGT-GAAAAAAAAGCTTTTTTTG
646 GTCTGTCTTATT-TAGAGACAAACATTGATTCCATAAAAAACAGTGGAAAGAAAAGCTTTTCTTG
* * *
134824 CAACACCAAAGCATCAATGTCATGTATCCTATAGACGGGGATGTGTTTTTGGTACCAAATCTTGA
710 CAACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTACCAAATCTTGA
* * *
134889 AAAGAATGTAGATTGTTACAAGAATCGATGCCTGTCTTATTTAAGGGATGAACTTTGATTTTAGG
775 AAAGAATGTAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAG
* *
134954 GAAAATAAGGCCAAGAAAAGATTTCCGTGCAAATGAAAATCATCAATATCATTTCACCTAATGAG
840 GAAAATAAGGCAAAGAAAAGATTTCCGTGCAAATGAAAATCATCAATATCATTTCTCCTAATGAG
*
135019 GAATGTGCTTATAGTGCCTAATCACAAAATGAATAAAGATC
905 GAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATC
* * *
135060 ATTACTAGAATCCAAGTTTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAAATTGCTGGGAA
1 ATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAA
* * * * * *
135125 AAATGCCTTTTTCGTGAAACTAAAGCATCAATATCGTGTATCCTAATGAGAAGAAC-ATGTTTAC
66 AAAGGCCTTTTTCGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAG-ACTATGTTTAT
* * * * * * *
135189 GGTGCCTAAT-CTAGAAAAGAATATGGATTAGCATGACTATTAATGTTTGTCATATT-TAAGAGC
130 GGTGCCTAATCCTA-AAAAGAA-AGGGATTAGTATGACCATTCATGTCTGTCTTATTCTTAGA--
* * * *
135252 CAAACCTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCATGCGACACCAGAGCATCAATG
191 CAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATG
* * * * * * * * * *
135317 TCAAGTATCCTAATAAAGGAAATATGTTTTAGGTTCCTAATCTTGAAAATG-ATGGT-GACTGTA
256 TCATGTATCCT-ATGAAGGGAATGTGTTTTTGGTACCAAATCTTGAAAAAGAAT-GTAGATTGTT
* *
135380 ACGAGAATCGATGCCCT-TCTTATTTAAGGGATGAACTTTGATTATT-AGAAAAAT-AGGACAAA
319 ACGAGAATCGATG-CTTGTCTTATTTAAGGGATGAACTTTGATT-TTAAGGAAAATAAGG-CAAA
* * *
135442 GAAAAGATTTCCATGTAAAAGAAAATCATCAATATCATTTATCCTAGTGAGGAGAATGTGCTTAT
381 GAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGA-G-GAATGTGCTTAT
* * * * * * * *
135507 AGTGCCAAATCACAAAATTAATGACGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCACG
444 AGTGCCTAATCACAAAATGAATGAAGATCATTGCTAGAATCCAAGTTTGTCCCATTTGAGGCATG
*
135572 AACTTAGACTTTACAAAAATTGGTGGGAAAATTGCCTTTCTTGCGAAACCAAAACATCAATATCG
509 AACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCG
** * * * *
135637 CGTATCCTAATCAGAGGACTATGTTTATGGTGCCAAATCCTGAAAAGAATGGGGATTTGTATGAC
574 CGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAC
* * * * *
135702 TATTCATGTTTGTCTTATTTAAGAGACAAACATTGATTCCATCAAAAAA-GGGGGAAATAAAAGC
639 CATTCATGTCTGTCTTATTT-AGAGACAAACATTGATTCCAT-AAAAAACAGTGGAAAGAAAAGC
* * * * *
135766 TTTTCTTACGACACCAAAGCATCAATGTCATGTATCGTATTGAAGGGAATGTGCTTTTGGTACCC
702 TTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTACCA
* * * * * *
135831 AATCTTGGAAACAATGGAGATTGTTGCGAGAATCAATGCTTGTCTTTTTTAAGGGATGAACTTTG
767 AATCTTGAAAAGAATGTAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTG
* * * * *
135896 ATTTTAAGGAAAA-CAGAGCAAAGAAAAGATTT-TGATACAAAAGAAAATCATCAACATCATTTC
832 ATTTTAAGGAAAATAAG-GCAAAGAAAAGATTTCCG-TGCAAATGAAAATCATCAATATCATTTC
* *
135959 TCCTAATGAGGAGAATGGGCTTATAGTGCCTATTCACAAAATGAATGAAGATC
895 TCCTAATGA-G-GAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATC
* * *
136012 ATTACTAGAATCTATGTTTGTCTTATTTGAGGCATGAACTTAGACTTTAAAAAAATTGGTGGG-A
1 ATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAA
* * * *
136076 AAATG-CTTTTCTTGCGAAACCGAAACATCAATATCGCGTATCCTAATGAGAAGACTAAGTTTAT
66 AAAGGCCTTTT-TCGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTATGTTTAT
* * ** *
136140 GGTGCCTAATCCTAAAATGAAAGGGGATTAGTAAGAGTATTCATGTTTGTCTTATT-TTAGAGAC
130 GGTGCCTAATCCTAAAAAGAAA-GGGATTAGTATGACCATTCATGTCTGTCTTATTCTT--AGAC
*
136204 AAACTTTGATTCTATCAAAAACAAG-GGAAAGAAAAG-TTTTCTTGCTGTCACCAAAGCATCAAT
192 AAACTTTGATTCTATCAAAAAC-AGTGGAAAGAAAAGCTTTTCTTG-TGACACCAAAGCATCAAT
* * * *
136267 GTCATGTATCCTATTGAAGGGGCA-GTGTTTTTGGCT-CCCAATCTTGAAAAA-AGTGGAGATTG
255 GTCATGTATCCTA-TGAA-GGGAATGTGTTTTTGG-TACCAAATCTTGAAAAAGAATGTAGATTG
* * * * *
136329 TTATGAGAATCGATGCTTGTCTTCTTTAGGGGATGAACATTGATTTTATGGAAAATAAGGCAAAG
317 TTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAG
* * * *
136394 AAACGATATCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATAAGGAATATGCTTATAGT
382 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGT
* * * * *
136459 GCCTAATTACAAAATGAATGAAGATCCTTGCTGGAATCCATGTTTGTCTCATTTGAGGCATGAAC
447 GCCTAATCACAAAATGAATGAAGATCATTGCTAGAATCCAAGTTTGTCCCATTTGAGGCATGAAC
* * * * * *
136524 TTAGACTTTACAAAAATTGGTGGGAAAAAGGCTTTTCATGCGGAACCAAAACATCAACATTGCGT
512 TTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGT
* * * * * *
136589 ATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAGTGGGGATTCGCATGACTAT
577 ATCCTAAAGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACCAT
* * * *
136654 TCATG-CTTGGCTTATTTAAGAGACAAAC-TATGATTCCATCAAAAACAGTGGAGAGGAAAGCTT
642 TCATGTC-TGTCTTATTT-AGAGACAAACAT-TGATTCCATAAAAAACAGTGGAAAGAAAAGCTT
* *
136717 TTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTA
704 TTCTTGCAACACCAAAGCATCAATGTCATGTATCCTA
136754 ATGAGTACAC
Statistics
Matches: 2319, Mismatches: 267, Indels: 102
0.86 0.10 0.04
Matches are distributed among these distances:
944 313 0.13
945 105 0.05
946 710 0.31
947 100 0.04
948 210 0.09
949 290 0.13
950 210 0.09
951 271 0.12
952 107 0.05
953 3 0.00
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (945 bp):
ATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAA
AAAGGCCTTTTTCGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATG
GTGCCTAATCCTAAAAAGAAAGGGATTAGTATGACCATTCATGTCTGTCTTATTCTTAGACAAAC
TTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATG
TATCCTATGAAGGGAATGTGTTTTTGGTACCAAATCTTGAAAAAGAATGTAGATTGTTACGAGAA
TCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTT
CCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAATCA
CAAAATGAATGAAGATCATTGCTAGAATCCAAGTTTGTCCCATTTGAGGCATGAACTTAGACTTT
ACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAAAG
AGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACCATTCATGTCTG
TCTTATTTAGAGACAAACATTGATTCCATAAAAAACAGTGGAAAGAAAAGCTTTTCTTGCAACAC
CAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTACCAAATCTTGAAAAGAA
TGTAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT
AAGGCAAAGAAAAGATTTCCGTGCAAATGAAAATCATCAATATCATTTCTCCTAATGAGGAATGT
GCTTATAGTGCCTAATCACAAAATGAATGAAGATC
Found at i:136827 original size:159 final size:158
Alignment explanation
Indices: 136587--136911 Score: 452
Period size: 159 Copynumber: 2.1 Consensus size: 158
136577 TCAACATTGC
* * * * *
136587 GTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAGTGGGGATTCGCATGACT
1 GTATCCTAATGAGAACACTAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACT
* * *
136652 ATTCATGCTTGGCTTATTTAAGAGACAAACTATGATTCCATCAAAAACAGTGGAGAGGAAAGCTT
66 ATTCATGCTTGGCTTATTTAAGAGACAAACTATGATTCCATCAAAAACAGAGGAAAGAAAAG-TT
**
136717 TTCTTGCGACACCAAAGCATCAATGTCGT
130 TTCTTGCGACACCAAAGCATCAATGTCAA
* * *
136746 GTATCCTAATGAGTACACTAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGTATGAGT
1 GTATCCTAATGAGAACACTAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACT
* * * * * * * *
136811 ATTCATGTTTGTCTTATTTAAGGGACAAACTTTGATTCTATCAAACACGGAGTAAAGAAAAGTTT
66 ATTCATGCTTGGCTTATTTAAGAGACAAACTATGATTCCATCAAAAACAGAGGAAAGAAAAGTTT
136876 TCTTGCGACACCAAAGCATCAATGTCAA
131 TCTTGCGACACCAAAGCATCAATGTCAA
136904 GTATCCTA
1 GTATCCTA
136912 TTAAAGGGAC
Statistics
Matches: 145, Mismatches: 21, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
158 37 0.26
159 108 0.74
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (158 bp):
GTATCCTAATGAGAACACTAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGCATGACT
ATTCATGCTTGGCTTATTTAAGAGACAAACTATGATTCCATCAAAAACAGAGGAAAGAAAAGTTT
TCTTGCGACACCAAAGCATCAATGTCAA
Found at i:136951 original size:158 final size:158
Alignment explanation
Indices: 136587--136954 Score: 373
Period size: 159 Copynumber: 2.3 Consensus size: 158
136577 TCAACATTGC
* * * ** * * * *
136587 GTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAGTGGGGATTCGCATGACT
1 GTATCCTAATAAGGACACTA-GTTTATACTGCCCAATCATGAAAAGAATGGGGATTAGCATGACT
* * *
136652 ATTCATGCTTGGCTTATTTAAGAGACAAACTATGATTCCATCAAAAACAGTGGAGAGGAAAGCTT
65 ATTCATGCTTGGCTTATTTAAGAGACAAACTATGATTCCATCAAAAACAGAGGAAAGAAAAGCTT
**
136717 TTCTTGCGACACCAAAGCATCAATGTCGT
130 TTCTTGCGACACCAAAGCATCAATGTCAA
* * ** * * *
136746 GTATCCTAATGAGTACACTAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGATTAGTATGAGT
1 GTATCCTAATAAGGACACT-AGTTTATACTGCCCAATCATGAAAAGAATGGGGATTAGCATGACT
* * * * * * * *
136811 ATTCATGTTTGTCTTATTTAAGGGACAAACTTTGATTCTATCAAACACGGAGTAAAGAAAAG-TT
65 ATTCATGCTTGGCTTATTTAAGAGACAAACTATGATTCCATCAAAAACAGAGGAAAGAAAAGCTT
136875 TTCTTGCGACACCAAAGCATCAATGTCAA
130 TTCTTGCGACACCAAAGCATCAATGTCAA
* * * *
136904 GTATCCTATTAAAGGGACAGT-GTTTTCTACT-CCCAATCTTGAAAAGAATGG
1 GTATCCTAAT-AA-GGACACTAG-TTTATACTGCCCAATCATGAAAAGAATGG
136955 AAATTGTTAT
Statistics
Matches: 176, Mismatches: 29, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
158 57 0.32
159 113 0.64
160 6 0.03
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (158 bp):
GTATCCTAATAAGGACACTAGTTTATACTGCCCAATCATGAAAAGAATGGGGATTAGCATGACTA
TTCATGCTTGGCTTATTTAAGAGACAAACTATGATTCCATCAAAAACAGAGGAAAGAAAAGCTTT
TCTTGCGACACCAAAGCATCAATGTCAA
Found at i:137318 original size:622 final size:624
Alignment explanation
Indices: 136075--137374 Score: 1724
Period size: 622 Copynumber: 2.1 Consensus size: 624
136065 AATTGGTGGG
* * * * *
136075 AAAATGCTTTTCTTGCGAAACCGAAA-CATCAATATCGCGTATCCTAATGAGAAGACTAAGTTTA
1 AAAAAGCTTTTCTTGCGACACC-AAAGCATCAATGTCGTGTATCCTAATGAGAACACTAAGTTTA
* *
136139 TGGTGCCTAATCCTAAAATGAAAGGGGATTAGTAAGAGTATTCATGTTTGTCTTATTTTAGAGAC
65 TGGTGCCTAATCATAAAATGAAAGGGGATTAGTAAGAGTATTCATGTTTGTCTTATTTAAGAGAC
*
136204 AAACTTTGATTCTATCAAAAACAAGGGAAAGAAAAGTTTTCTTGCTGTCACCAAAGCATCAATGT
130 AAACTTTGATTCTATC-AAAACAAGGGAAAGAAAAGTTTTCTTGCTGACACCAAAGCATCAATGT
* * * * *
136269 CATGTATCCTATTGAAGGGGCAGTGTTTTTGGCTCCCAATCTTGAAAAAAGTGGAGATTGTTATG
194 CAAGTATCCTATTAAAGGGACAGTGTTTTTGACTCCCAATCTTGAAAAAAGTGGAAATTGTTATG
* * *
136334 AGAATCGATGCTTGTCTTCTTTAGGGGATGAACATTGATTTTATGGAAAATAAGGCAAAGAAACG
259 AGAATCGATACTTGTCTTATTTAGGGGATGAACATTGATTTTAT-----AT-AGG--AAGAAAAG
* * * *
136399 ATATCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATAAGGAATATGCTTATAGTGCCTA
316 ATATCCATCCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAATATGCTCATAGCGCCTA
* * * * * * *
136464 ATTACAAAATGAATGAAGATCCTTGCTGGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGA
381 ATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACATAGA
* * * *
136529 CTTTACAAAAATTGGTGGGAAAAAGGCTTTTCATGCGGAACCAAAACATCAACATTGCGTATCCT
446 CTTTACAAAAATTAGTGGGAAAAAGGCCTTTCATGCGGAACCAAAACATCAACATCGCGTATCAT
*
136594 AATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAGTGGGGATTCGCATGACTATTCATG
511 AATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTCGCATGACTATTCATG
*
136659 CTTGGCTTATTTAAGAGACAAACTATGATTCCATCAAAAACAG-TGGAGA
576 CTTGGCTTATTTAAGAGACAAACTATGATTCCATCAAAAAC-GTTGGAAA
** *
136708 GGAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAATGAGTACACTAAGTTTAT
1 AAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAATGAGAACACTAAGTTTAT
* * *
136773 GGTGCCTAATCATGAAAA-GAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGGGAC
66 GGTGCCTAATCAT-AAAATGAAAGGGGATTAGTAAGAGTATTCATGTTTGTCTTATTTAAGAGAC
*
136837 AAACTTTGATTCTATC-AAACACGGAGTAAAGAAAAGTTTTCTTGC-GACACCAAAGCATCAATG
130 AAACTTTGATTCTATCAAAACAAGG-G-AAAGAAAAGTTTTCTTGCTGACACCAAAGCATCAATG
136900 TCAAGTATCCTATTAAAGGGACAGTGTTTTCT-ACTCCCAATCTTGAAAAGAA-TGGAAATTGTT
193 TCAAGTATCCTATTAAAGGGACAGTGTTTT-TGACTCCCAATCTTGAAAA-AAGTGGAAATTGTT
* * *
136963 ATGAGAATCGATACTTGTGTTATTTAGGGGATGAACTTTGATTTT-T-T-GG-AGAAAAGATTTC
256 ATGAGAATCGATACTTGTCTTATTTAGGGGATGAACATTGATTTTATATAGGAAGAAAAGATATC
* ** *
137024 CATCCAAAAGAAAATCATCAATATCATTTATCCTAGTGCGGAGAATGTGCTCATAGCGCCTAATC
321 CATCCAAAAGAAAATCATCAATATCATTTATCCTAAT-AAG-GAATATGCTCATAGCGCCTAATC
* * *
137089 ACAAAATTAATGATGATCATTACTAGAATCCATGTTTGTCTCGTTTAAGGCACGAACATAGACTT
384 ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACATAGACTT
* ** * * *
137154 TACAAAATTTAGTGGGAAAATTGCCTTTCTTGC-GAATCCAAAACATTAATATCGCGTATCATAA
449 TACAAAAATTAGTGGGAAAAAGGCCTTTCATGCGGAA-CCAAAACATCAACATCGCGTATCATAA
* * * * * * *
137218 TGGGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTTGTATGGCTCTTCATGTT
513 TGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTCGCATGACTATTCATGCT
* * * *
137283 TGTCTTATTTAAGAGTCAAACTTTGATTTCATCAAAAACGTTGGAAA
578 TGGCTTATTTAAGAGACAAACTATGATTCCATCAAAAACGTTGGAAA
* *
137330 AAAAAGCTTTTCTTGCGACACCAAAGCAACAATGTCATGTATCCT
1 AAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCT
137375 GTTGAAGCGA
Statistics
Matches: 586, Mismatches: 71, Indels: 31
0.85 0.10 0.05
Matches are distributed among these distances:
620 44 0.08
621 5 0.01
622 263 0.45
623 2 0.00
625 1 0.00
631 8 0.01
632 115 0.20
633 144 0.25
634 4 0.01
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31
Consensus pattern (624 bp):
AAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAATGAGAACACTAAGTTTAT
GGTGCCTAATCATAAAATGAAAGGGGATTAGTAAGAGTATTCATGTTTGTCTTATTTAAGAGACA
AACTTTGATTCTATCAAAACAAGGGAAAGAAAAGTTTTCTTGCTGACACCAAAGCATCAATGTCA
AGTATCCTATTAAAGGGACAGTGTTTTTGACTCCCAATCTTGAAAAAAGTGGAAATTGTTATGAG
AATCGATACTTGTCTTATTTAGGGGATGAACATTGATTTTATATAGGAAGAAAAGATATCCATCC
AAAAGAAAATCATCAATATCATTTATCCTAATAAGGAATATGCTCATAGCGCCTAATCACAAAAT
GAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACATAGACTTTACAAAA
ATTAGTGGGAAAAAGGCCTTTCATGCGGAACCAAAACATCAACATCGCGTATCATAATGAGAAGA
CTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTCGCATGACTATTCATGCTTGGCTTAT
TTAAGAGACAAACTATGATTCCATCAAAAACGTTGGAAA
Found at i:137647 original size:476 final size:470
Alignment explanation
Indices: 136716--138317 Score: 1890
Period size: 476 Copynumber: 3.4 Consensus size: 470
136706 GAGGAAAGCT
* * * * * *
136716 TTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAATGAGTACACTAAGTTTATGGTGCCTA
1 TTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTAAGTTTATGGTGCCTA
*
136781 ATCATGAAAAGAATGGGGATTAGTATGAG-TATTCATGTTTGTCTTATTTAAGGGACAAACTTTG
66 ATCATGAAAAGAATGGGGATTAGTATGAGCTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
* * *
136845 ATTCTATCAAACACG-GAGTAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCAAGTATC
131 ATTCTATCAAAAACGTG-G-AAAAAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
* * * *
136909 CTATTAAAGGGACAGTGTTTT-CTACTCCCAATCTTGAAAAGAATGGAAATTGTTATGAGAATCG
194 CTATTGAAGGGA-AGTGTTTTGCTA--CCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATTG
* * *
136973 ATACTTGTGTTATTTAGGGGATGAACTTTGATTTT-------TTG-G---AGAAAAGATTTCCAT
256 ATGCTTGTCTTATTTAGGGGATGAACTTTGATTTTAGGAAAATAGAGCAAAGAAAAGATTTCCAT
* * * * *
137027 CCAAAAGAAAATCATCAATATCATTTATCCTAGTGCGGAGAATGTGCTCATAGCGCCTAATCACA
321 AC-AAAGAAAATCATCAATATCATTTCTCCTAATGAGGAGAATGTGCTCATAGTGCCTAATCACA
* * * * * *
137092 AAATTAATGATGATCATTACTAGAATCCATGTTTGTCTCGTTTAAGGCACGAACATAGACTTTAC
385 AAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAAGAACTTAGACTTTAC
* *
137157 AAAATTTAGTGGGAAAATTGCC
450 AAAAATTGGTGGGAAAA-TGCC
* * * * *
137179 TTTCTTGCGAATCCAAAACATTAATATCGCGTATCATAATGGGAAGACTATGTTTATGGTGCCTA
1 TTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTAAGTTTATGGTGCCTA
* * * *
137244 ATCTTGAAAAGAATGGGGATTTGTATG-GCTCTTCATGTTTGTCTTATTTAAGAGTCAAACTTTG
66 ATCATGAAAAGAATGGGGATTAGTATGAGCTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
*
137308 ATT-TCATCAAAAACGTTGGAAAAAAAAGCTTTTCTTGCGACACCAAAGCAACAATGTCATGTAT
131 ATTCT-ATCAAAAACG-TGGAAAAAAAAG-TTTTCTTGCGACACCAAAGCATCAATGTCATGTAT
* * * * * *
137372 CCTGTTGAAGCGAATGTGCTTTTGGTACCCAATCTTGGAAAGAGTGGAGATTGTTGCGAGAATTG
193 CCTATTGAAGGGAA-GTG-TTTTGCTACCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATTG
* * **
137437 ATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGAGCAAAGAAAAGATTTTGA
256 ATGCTTGTCTTATTTAGGGGATGAACTTTGATTTT-AGGAAAATAGAGCAAAGAAAAGATTTCCA
* * * *
137502 TACAAATGAAAAGCATCAATATCATTTCTCCTAATGAGGAGAAGGTGCTGATAGTGTCTAATCAC
320 TACAAA-GAAAATCATCAATATCATTTCTCCTAATGAGGAGAATGTGCTCATAGTGCCTAATCAC
* **
137567 AAAATGAATGAAGATCATTACTAGAATCCATGTTTATCTCATTTGAGGCAAGAACTTATTCTTTA
384 AAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAAGAACTTAGACTTTA
*
137632 CAAAAATTGGTGGGAAAAATGCT
449 CAAAAATTGGTGGG-AAAATGCC
137655 TTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTAAGTTTATGGTGCCTA
1 TTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTAAGTTTATGGTGCCTA
* * *
137720 ATCATGAAAAGAATAGGGATTAGTGTGAGC-ATTCATGTTTATCTTATTTAAGAGACAAACTTTG
66 ATCATGAAAAGAATGGGGATTAGTATGAGCTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
** * * * * *
137784 ATTCTATCCTAAATGGGGGAAAAAAAGTTTTCTTGCGAGACCAAAGCATCAACGTCATGTATCCT
131 ATTCTATCAAAAACGTGGAAAAAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT
* *
137849 ATTGAAGGGACGGTATTTTTGACT-CCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATTGAT
196 ATTGAAGGGA-AGT-GTTTTG-CTACCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATTGAT
* *
137913 GCATGTCTTATTTAGGGGATGAACTTTGATTTTATGGAAAATA-AGGCAAAGAAAAGGTTTCCAT
258 GCTTGTCTTATTTAGGGGATGAACTTTGATTTTA-GGAAAATAGA-GCAAAGAAAAGATTTCCAT
* * * * *
137977 GCAAAAAAAATCATCAATATCATTTCTCCTAATGA-G-GAATGTTCTTATAATGCCTAATCACAA
321 ACAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAGAATGTGCTCATAGTGCCTAATCACAA
* * * * * *
138040 AATGAATGAAGATAATTGCTAGAATCCATTTTTGTCCCATTTGAGGCATGAACTTAGACTTTTCA
386 AATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAAGAACTTAGACTTTACA
*
138105 AAAATTGGTGGGAAAGAGGCC
451 AAAATTGGTGGGAAA-ATGCC
* * * * * * *
138126 TTTCATGCAAAACCAAAACTTCAATATTGCGTATCCTAATAAGAAGACTATGTTTA---TG-AT-
1 TTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTAAGTTTATGGTGCCTA
* * * * * *
138186 ATCCTCAAAAGAATGAGGATTAGTATGA-CTATTCATTTTTGTCTTATTTAAAAGATAAACTTTG
66 ATCATGAAAAGAATGGGGATTAGTATGAGCTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
* * * **
138250 ATTCCACCAAAAATGATGGAAAGGAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
131 ATTCTATCAAAAACG-TGGAAAAAAAAG-TTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
138315 CTA
194 CTA
138318 ATGAGAAGAT
Statistics
Matches: 969, Mismatches: 137, Indels: 61
0.83 0.12 0.05
Matches are distributed among these distances:
462 2 0.00
463 132 0.14
464 110 0.11
465 6 0.01
466 66 0.07
467 9 0.01
468 39 0.04
470 3 0.00
471 143 0.15
472 3 0.00
473 31 0.03
474 145 0.15
475 14 0.01
476 259 0.27
477 7 0.01
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.32
Consensus pattern (470 bp):
TTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTAAGTTTATGGTGCCTA
ATCATGAAAAGAATGGGGATTAGTATGAGCTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
ATTCTATCAAAAACGTGGAAAAAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT
ATTGAAGGGAAGTGTTTTGCTACCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATTGATGCT
TGTCTTATTTAGGGGATGAACTTTGATTTTAGGAAAATAGAGCAAAGAAAAGATTTCCATACAAA
GAAAATCATCAATATCATTTCTCCTAATGAGGAGAATGTGCTCATAGTGCCTAATCACAAAATGA
ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAAGAACTTAGACTTTACAAAAAT
TGGTGGGAAAATGCC
Found at i:138304 original size:154 final size:156
Alignment explanation
Indices: 138126--138462 Score: 383
Period size: 159 Copynumber: 2.2 Consensus size: 156
138116 GAAAGAGGCC
* * * * ** *
138126 TTTCATGCAAAACCAAAACTTCAATATTGCGTATCCTAATAAGAAGACTATGTTTA-TG-AT-AT
1 TTTCTTGCAACACCAAAGCATCAATATCACGTATCCTAATAAGAAGACTAAGTTTAGTGCATAAT
* * *
138188 CCTCAAAAGAATGAGGATTAGTATGACTATTCATTTTTGTCTTATTTAAAAGATAAACTTTGATT
66 CCTCAAAAAAATGAGGATTAGTATGACTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATT
* *
138253 CCACCAAAAATGATGGAAAGGAAAGCT
131 CCACCAAAAATGAGGGAAAGAAAAG-T
* * * * * *
138280 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAGAAGATTAAGTTTATGGTGCCTA
1 TTTCTTGCAACACCAAAGCATCAATATCACGTATCCTAATAAGAAGACTAAGTTTA--GTGCATA
* * * * * * *
138345 ATCCTGAAAAAAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGGCAAGCTTTGA
64 ATCCTCAAAAAAATGAGGATTAGTATGACTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGA
* *
138410 TTCTATCAAAAATGAGGGAAAGAAAAGT
129 TTCCACCAAAAATGAGGGAAAGAAAAGT
138438 TTTCTTGCAACACCAAAGCATCAAT
1 TTTCTTGCAACACCAAAGCATCAAT
138463 GCTAAGTATC
Statistics
Matches: 150, Mismatches: 28, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
154 44 0.29
157 2 0.01
158 26 0.17
159 78 0.52
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.32
Consensus pattern (156 bp):
TTTCTTGCAACACCAAAGCATCAATATCACGTATCCTAATAAGAAGACTAAGTTTAGTGCATAAT
CCTCAAAAAAATGAGGATTAGTATGACTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATT
CCACCAAAAATGAGGGAAAGAAAAGT
Found at i:138824 original size:626 final size:624
Alignment explanation
Indices: 137647--138942 Score: 1831
Period size: 626 Copynumber: 2.1 Consensus size: 624
137637 ATTGGTGGGA
* * * **
137647 AAAATGCTTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTAAGTTTAT
1 AAAA-GCTTTTCTTGCGACACCAAAGCATCAATGTCAAGTATCCTAATGAGAAGACTAAGTTTAT
*
137712 GGTGCCTAATCATGAAAAGAATAGGGATTAGTGTGAGCATTCATGTTTATCTTATTTAAGAGACA
65 GGTGCCTAATCATGAAAAAAATAGGGATTAGTGTGAGCATTCATGTTTATCTTATTTAAGAGACA
** * * * *
137777 AACTTTGATTCTATCCTAAATGGGGGAAAAAAAGTTTTCTTGCGAGACCAAAGCATCAACGTCAT
130 AACTTTGATTCTATCAAAAATGAGGGAAAAAAAGTTTTCTTGCAACACCAAAGCATCAACGTCAA
137842 GTATCCTATTGAAGGGACGGTATTTTTGACTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGA
195 GTATCCTATTGAAGGGACGGTATTTTTGACTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGA
** * *
137907 ATTGATGCATGTCTTATTTAGGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGGTT
260 ACCGATGCATGTCTTATTTAGGGGATGAACTTTGATTTTATAGAAAATAAGGCAAAGAAAAGATT
*
137972 TCCATGCAAAAAAAATCATCAATATCATTTCTCCTAATGAGGAATGTTCTTATAATGCCTAATCA
325 TCCATGCAAAAAAAATCATCAATATCATTTCTCCTAATGAAGAATG-TCTTATAATGCCTAATCA
* *
138037 CAAAATGAATGAAGATAATTGCTAGAATCCATTTTTGTCCCATTTGAGGCATGAACTTAGACTTT
389 CAAAATGAATGAAGATAATTACTAGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGACTTT
* ** * * * *
138102 TCAAAAATTGGTGGGAAAGAGGCCTTTCATGCAAAACCAAAACTTCAATATTGCGTATCCTAATA
454 ACAAAAATTGGCAGGAAAAAGGCCTTTCATGCAAAACCAAAACATCAATATCGCATATCCTAATA
* * *
138167 AGAAGACTATGTTTATGATATCCTCAAAAGAATGAGGATTAGTATGACTATTCATTTTTGTCTTA
519 AGAAGACTATGTTTATGATATCCTAAAAAGAATGAGGATTAGTATGACTATTAATGTTTGTCTTA
* * *
138232 TTTAAAAGATAAACTTTGATTCCACCAAAAATGATGG-AAAG
584 TTTAAAAGACAAACTTTGATTCCACCAAAAA-CAGGGAAAAG
* * *
138273 GAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAGAAGATTAAGTTTATG
1 AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAAGTATCCTAATGAGAAGACTAAGTTTATG
* * * * *
138338 GTGCCTAATCCTGAAAAAAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGGCAA
66 GTGCCTAATCATGAAAAAAATAGGGATTAGTGTGAGCATTCATGTTTATCTTATTTAAGAGACAA
* *
138403 GCTTTGATTCTATCAAAAATGAGGGAAAGAAAAGTTTTCTTGCAACACCAAAGCATCAATG-CTA
131 ACTTTGATTCTATCAAAAATGAGGGAAA-AAAAGTTTTCTTGCAACACCAAAGCATCAACGTC-A
* * * *
138467 AGTATCCTATTGAAGGGA-GAGTGTTTTTGGCTTCCAATCTTGAAATGAATGGAGATTGTTACGA
194 AGTATCCTATTGAAGGGACG-GTATTTTTGACTCCCAATCTTGAAAAGAATGGAGATTGTTACGA
* * *
138531 GAACCGATGCTTGTCTT-TTTAAGGGGATGAACTTTGATTTTATAGAAAATAAGTCAGAGAAAAG
258 GAACCGATGCATGTCTTATTT-AGGGGATGAACTTTGATTTTATAGAAAATAAGGCAAAGAAAAG
* * *
138595 ATTTTCATGCAAAAGAAAATCATCAATATCATTTCTCCTAAT-AAG-CTG-CTTATAGTGCCTAA
322 ATTTCCATGCAAAA-AAAATCATCAATATCATTTCTCCTAATGAAGAATGTCTTATAATGCCTAA
*
138657 TCACAAAATGAATGAAG-TTATTACTAGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGAC
386 TCACAAAATGAATGAAGATAATTACTAGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGAC
* *
138721 TTTACAAAAATTGGCAGGAAAAAGGCCTTTCTTGCGAAACCAAAACATCAATATCGCATATCCTA
451 TTTACAAAAATTGGCAGGAAAAAGGCCTTTCATGCAAAACCAAAACATCAATATCGCATATCCTA
* *
138786 A-AGAGAA-ACTATGTTTACGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTAATG
516 ATA-AGAAGACTATGTTTA---TG-AT-ATCCTAAAAAGAATGAGGATTAGTATGACTATTAATG
** **
138849 TTTGTCTTATTTAGGAGACAAACTTTGATTCCGTCAAAAACAGGGAAAAG
575 TTTGTCTTATTTAAAAGACAAACTTTGATTCCACCAAAAACAGGGAAAAG
*
138899 AAAAG-TTTTCTTGTGACACCAAAGCATCAATGTCAAGTATCCTA
1 AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAAGTATCCTA
138943 TTTAAGGGAC
Statistics
Matches: 595, Mismatches: 63, Indels: 25
0.87 0.09 0.04
Matches are distributed among these distances:
621 11 0.02
622 105 0.18
623 30 0.05
624 2 0.00
625 186 0.31
626 234 0.39
627 27 0.05
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.31
Consensus pattern (624 bp):
AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAAGTATCCTAATGAGAAGACTAAGTTTATG
GTGCCTAATCATGAAAAAAATAGGGATTAGTGTGAGCATTCATGTTTATCTTATTTAAGAGACAA
ACTTTGATTCTATCAAAAATGAGGGAAAAAAAGTTTTCTTGCAACACCAAAGCATCAACGTCAAG
TATCCTATTGAAGGGACGGTATTTTTGACTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAA
CCGATGCATGTCTTATTTAGGGGATGAACTTTGATTTTATAGAAAATAAGGCAAAGAAAAGATTT
CCATGCAAAAAAAATCATCAATATCATTTCTCCTAATGAAGAATGTCTTATAATGCCTAATCACA
AAATGAATGAAGATAATTACTAGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGACTTTAC
AAAAATTGGCAGGAAAAAGGCCTTTCATGCAAAACCAAAACATCAATATCGCATATCCTAATAAG
AAGACTATGTTTATGATATCCTAAAAAGAATGAGGATTAGTATGACTATTAATGTTTGTCTTATT
TAAAAGACAAACTTTGATTCCACCAAAAACAGGGAAAAG
Found at i:138901 original size:467 final size:465
Alignment explanation
Indices: 138280--139791 Score: 1922
Period size: 467 Copynumber: 3.2 Consensus size: 465
138270 AAGGAAAGCT
* * * ** * * *
138280 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAGAAGATTAAGTTTATGGTGCCTA
1 TTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTA
* * * *
138345 ATCCTGAAAAA-AATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGGCAAGCTTTG
66 ATCCT-AAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
* * **
138409 ATTCTATCAAAAATGAGGGAAAGAAAAGTTTTCTTGCAACACCAAAGCATCAATGCTAAGTATCC
130 ATTCCATCAAAAA-CAGGGAAAGAAAAGTTTTCTTGTGACACCAAAGCATCAATG-TAAGTATCC
* *
138474 TATTGAAGGGAGAGTGTTTTTGGCTTCCAATCTTGAAATGAATGGAGATTGTTACGAGAACCGAT
193 TATTGAAGGGA-AGTGTTTTTGGCTTCCAATCTTGAAAAGAATGGAGATTGTTACGAGAAACGAT
* * *
138539 GCTTGTCTT-TTTAAGGGGATGAACTTTGATTTTATAGAAAATAAGTCAGAGAAAAGATTTTCAT
257 GCTTGTCTTATTTAAGGGGATGAACTTTGATTTTATAGAAAATAAGGCAAAGAAAAGATTTCCAT
138603 GCAAAAGAAAATCATCAATATCATTTCTCCTAAT-AAGCTGCTTATAGTGCCTAATCACAAAATG
322 GCAAAAGAAAATCATCAATATCATTTCTCCTAATGAAG-TGCTTATAGTGCCTAATCACAAAATG
*
138667 AATGAAGTTATTACTAGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAAAT
386 AATGAAGTCATTACTAGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAAAT
138732 TGGCAGGAAAAAGGCC
451 TGG-AGGAAAAAGGCC
* *
138748 TTTCTTGCGAAACCAAAACATCAATATCGCATATCCTAAAGAGAA-ACTATGTTTACGGTGCCTA
1 TTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTA
* *
138812 ATCCTAAAAAGAATGGGGATTAGTATGACTATTAATGTTTGTCTTATTTAGGAGACAAACTTTGA
66 ATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
*
138877 TTCCGTCAAAAACAGGGAAAAGAAAAGTTTTCTTGTGACACCAAAGCATCAATGTCAAGTATCCT
131 TTCCATCAAAAACAGGG-AAAGAAAAGTTTTCTTGTGACACCAAAGCATCAATGT-AAGTATCCT
* * * * * * *
138942 ATTTAAGGGACAATGTTTTTGGCTCCCAATCTTGAAAAGATTAGAGATTGTTACGAGAATCGGTG
194 ATTGAAGGGA-AGTGTTTTTGGCTTCCAATCTTGAAAAGAATGGAGATTGTTACGAGAAACGATG
*
139007 CTTGTCTTATTT-AGGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCCATG
258 CTTGTCTTATTTAAGGGGATGAACTTTGATTTTATAGAAAATAAGGCAAAGAAAAGATTTCCATG
* * *
139071 CAAAAGAAAATCATCAATATCTTTTATCCTAGTGAGGAGAATGTACTTATAGTGCCTAATCA-AA
323 CAAAAGAAAATCATCAATATCATTTCTCCTAATGA--AG--TG--CTTATAGTGCCTAATCACAA
* * *
139135 AATTAATGGCAA-TCATTACTAGAATCCATGTTTG-CCTCATTTAAGGCACGAACTTAGACTTTA
382 AATGAAT-G-AAGTCATTACTAGAATCCATGTTTGTCC-CATTTGAGGCATGAACTTAGACTTTA
* * *
139198 CAAAAATTGGGGGGAAAATGCC
444 CAAAAATTGGAGGAAAAAGGCC
* * *
139220 TTTCTTACGAAACCAAAACATCAATATCGCGTATCCCAAAGGGAAGACTATGTTTATGGTGCCTA
1 TTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTA
** ** * *
139285 AT-CTTGAAAGAAATGGATATTAGTATGACTATTCGTGTTTGTCTTGTTTAAGAGACAAACTTTG
66 ATCCTAAAAAG-AATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
* * ** **
139349 ATTCCATCAAAAACGGTGGAAGGAAAAGCTTTTGATGTGACACTGAAGCATCAA--T--GTATCC
130 ATTCCATCAAAAACAG-GGAAAGAAAAG-TTTTCTTGTGACACCAAAGCATCAATGTAAGTATCC
* *
139410 TATTGATGGGAATGTGTTTTTGG-TTCCCAATCTTGAAAAGAATGGTGATTGTTACGAGAAACGA
193 TATTGAAGGGAA-GTGTTTTTGGCTT-CCAATCTTGAAAAGAATGGAGATTGTTACGAGAAACGA
* * * *
139474 TGCTTGTCTTATTTAA-GGGATAAACTTTTATTTTA-CGAAAAATAGGGCAAAGAAAAGATTTCC
256 TGCTTGTCTTATTTAAGGGGATGAACTTTGATTTTATAG-AAAATAAGGCAAAGAAAAGATTTCC
* * *
139537 ATGCAATAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGTTTATAGTGCCTAATGACA
320 ATGCAAAAGAAAATCATCAATATCATTTCTCCTAAT---GAA-GTGCTTATAGTGCCTAATCACA
* * * *
139602 AAATGATTGAAGATCATTACTAGAATCCATGTTTGTCCCATTAGAGCCATGAACTTAGACTTCAC
381 AAATGAATGAAG-TCATTACTAGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGACTTTAC
* *
139667 AAAAATTGGTGAGAAAAAGGCT
445 AAAAATTGGAG-GAAAAAGGCC
* * *
139689 TTTCTTGTGAAACCAAAACCTCAATATCGCGTATCCTAAAGGGAAGACTATGTTTATGGTGCCTA
1 TTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTA
* * *
139754 ATCCTAAAAAGAATGGGGGTTAGTTTGACCATTCATGT
66 ATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGT
139792 CTGTTGATGA
Statistics
Matches: 906, Mismatches: 107, Indels: 61
0.84 0.10 0.06
Matches are distributed among these distances:
466 12 0.01
467 280 0.31
468 106 0.12
469 239 0.26
470 10 0.01
471 3 0.00
472 69 0.08
473 162 0.18
474 25 0.03
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (465 bp):
TTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAAAGAGAAGACTATGTTTATGGTGCCTA
ATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
TTCCATCAAAAACAGGGAAAGAAAAGTTTTCTTGTGACACCAAAGCATCAATGTAAGTATCCTAT
TGAAGGGAAGTGTTTTTGGCTTCCAATCTTGAAAAGAATGGAGATTGTTACGAGAAACGATGCTT
GTCTTATTTAAGGGGATGAACTTTGATTTTATAGAAAATAAGGCAAAGAAAAGATTTCCATGCAA
AAGAAAATCATCAATATCATTTCTCCTAATGAAGTGCTTATAGTGCCTAATCACAAAATGAATGA
AGTCATTACTAGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGAG
GAAAAAGGCC
Found at i:139101 original size:626 final size:625
Alignment explanation
Indices: 137647--139088 Score: 1666
Period size: 626 Copynumber: 2.3 Consensus size: 625
137637 ATTGGTGGGA
* * * ** *
137647 AAAATGCTTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGA-CTAAGTTTA
1 AAAA-GCTTTTCTTGCGACACCAAAGCATCAATGTCAAGTATCCTAATAAGAAGATC-AAGTTTA
* * * * * * * * *
137711 TGGTGCCTAATCATGAAAAGAATAGGGATTAGTGTGAGCATTCATGTTTATCTTATTTAAGAGAC
64 TGGTGCCCAATCCTGAAAAAAATAGAGATTAGTGTGAGTAATCATGCTTGTCTTATTTAAGAGGC
** ** * * * * * * *
137776 AAACTTTGATTCTATCCTAAATGGGGGAAA-AAAAGTTTTCTTGCGAGACCAAAGCATCAACG-T
129 AAACTTTGATTCTATCAAAAATAAGGCAAAGAAAAGTTTCCATGCAAAACAAAAGCATCAATGCT
*
137839 CATGTATCCTATTGAAGGGACGGTATTTTTGACTCCCAATCTTGAAAAGAATGGAGATTGTTACG
194 -AAGTATCCTATTGAAGGGACGGTATTTTTGACTCCCAATCTTGAAAAGAATGGAGATTGTTACG
** *
137904 AGAATTGATGCATGTCTTATTTAGGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAG
258 AGAACCGATGCATGTCTTATTTAGGGGATGAACTTTGATTTTATAGAAAATAAGGCAAAGAAAAG
* *
137969 GTTTCCATGCAAAAAAAATCATCAATATCATTTCTCCTAATGAGGAATGTTCTTATAATGCCTAA
323 ATTTCCATGCAAAAAAAATCATCAATATCATTTCTCCTAATGAAGAATG-TCTTATAATGCCTAA
* *
138034 TCACAAAATGAATGAAGATAATTGCTAGAATCCATTTTTGTCCCATTTGAGGCATGAACTTAGAC
387 TCACAAAATGAATGAAGATAATTACTAGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGAC
* ** * * * *
138099 TTTTCAAAAATTGGTGGGAAAGAGGCCTTTCATGCAAAACCAAAACTTCAATATTGCGTATCCTA
452 TTTACAAAAATTGGCAGGAAAAAGGCCTTTCATGCAAAACCAAAACATCAATATCGCATATCCTA
* * *
138164 ATAAGAAGACTATGTTTATGATATCCTCAAAAGAATGAGGATTAGTATGACTATTCATTTTTGTC
517 ATAAGAAGACTATGTTTATGATATCCTAAAAAGAATGAGGATTAGTATGACTATTAATGTTTGTC
* * *
138229 TTATTTAAAAGATAAACTTTGATTCCACCAAAAATGATGGAAAG
582 TTATTTAAAAGACAAACTTTGATTCCACCAAAAATCAGGGAAAG
* * * *
138273 GAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAGAAGATTAAGTTTATG
1 AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAAGTATCCTAATAAGAAGATCAAGTTTATG
* * * * *
138338 GTGCCTAATCCTGAAAAAAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGGCAA
66 GTGCCCAATCCTGAAAAAAATAGAGATTAGTGTGAGTAATCATGCTTGTCTTATTTAAGAGGCAA
* * * * * * *
138403 GCTTTGATTCTATCAAAAATGAGGGAAAGAAAAGTTTTCTTGCAACACCAAAGCATCAATGCTAA
131 ACTTTGATTCTATCAAAAATAAGGCAAAGAAAAGTTTCCATGCAAAACAAAAGCATCAATGCTAA
* * * *
138468 GTATCCTATTGAAGGGA-GAGTGTTTTTGGCTTCCAATCTTGAAATGAATGGAGATTGTTACGAG
196 GTATCCTATTGAAGGGACG-GTATTTTTGACTCCCAATCTTGAAAAGAATGGAGATTGTTACGAG
* * *
138532 AACCGATGCTTGTCTT-TTTAAGGGGATGAACTTTGATTTTATAGAAAATAAGTCAGAGAAAAGA
260 AACCGATGCATGTCTTATTT-AGGGGATGAACTTTGATTTTATAGAAAATAAGGCAAAGAAAAGA
* * *
138596 TTTTCATGCAAAAGAAAATCATCAATATCATTTCTCCTAAT-AAG-CTG-CTTATAGTGCCTAAT
324 TTTCCATGCAAAA-AAAATCATCAATATCATTTCTCCTAATGAAGAATGTCTTATAATGCCTAAT
*
138658 CACAAAATGAATGAAG-TTATTACTAGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGACT
388 CACAAAATGAATGAAGATAATTACTAGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGACT
* *
138722 TTACAAAAATTGGCAGGAAAAAGGCCTTTCTTGCGAAACCAAAACATCAATATCGCATATCCTAA
453 TTACAAAAATTGGCAGGAAAAAGGCCTTTCATGCAAAACCAAAACATCAATATCGCATATCCTAA
* *
138787 -AGAGAA-ACTATGTTTACGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTAATGT
518 TA-AGAAGACTATGTTTA---TG-AT-ATCCTAAAAAGAATGAGGATTAGTATGACTATTAATGT
** **
138850 TTGTCTTATTTAGGAGACAAACTTTGATTCCGTCAAAAA-CAGGGAAAAG
577 TTGTCTTATTTAAAAGACAAACTTTGATTCCACCAAAAATCAGGG-AAAG
* * * *
138899 AAAAG-TTTTCTTGTGACACCAAAGCATCAATGTCAAGTATCCTATTTAAG-GGA-CAATGTTTT
1 AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAAGTATCCTA-ATAAGAAGATCAA-GTTTA
* * * *
138961 TGGCT-CCCAATCTTGAAAAGATTAGAGATT-GT-TACGAG-AATCGGTGCTTGTCTTATTT-AG
64 TGG-TGCCCAATCCTGAAAAAAATAGAGATTAGTGT--GAGTAATC-ATGCTTGTCTTATTTAAG
* * ** * *
139021 -GGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCAT
125 AGGCA--AACTTTGATTCTATCAAAAATAAGGCAAAGAAAAG-TTTCCATGCAAAACAAAAGCAT
139085 CAAT
187 CAAT
139089 ATCTTTTATC
Statistics
Matches: 704, Mismatches: 90, Indels: 44
0.84 0.11 0.05
Matches are distributed among these distances:
621 11 0.02
622 105 0.15
623 34 0.05
624 11 0.02
625 257 0.37
626 258 0.37
627 28 0.04
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.31
Consensus pattern (625 bp):
AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAAGTATCCTAATAAGAAGATCAAGTTTATG
GTGCCCAATCCTGAAAAAAATAGAGATTAGTGTGAGTAATCATGCTTGTCTTATTTAAGAGGCAA
ACTTTGATTCTATCAAAAATAAGGCAAAGAAAAGTTTCCATGCAAAACAAAAGCATCAATGCTAA
GTATCCTATTGAAGGGACGGTATTTTTGACTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGA
ACCGATGCATGTCTTATTTAGGGGATGAACTTTGATTTTATAGAAAATAAGGCAAAGAAAAGATT
TCCATGCAAAAAAAATCATCAATATCATTTCTCCTAATGAAGAATGTCTTATAATGCCTAATCAC
AAAATGAATGAAGATAATTACTAGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGACTTTA
CAAAAATTGGCAGGAAAAAGGCCTTTCATGCAAAACCAAAACATCAATATCGCATATCCTAATAA
GAAGACTATGTTTATGATATCCTAAAAAGAATGAGGATTAGTATGACTATTAATGTTTGTCTTAT
TTAAAAGACAAACTTTGATTCCACCAAAAATCAGGGAAAG
Found at i:139180 original size:626 final size:625
Alignment explanation
Indices: 137647--139180 Score: 1510
Period size: 625 Copynumber: 2.5 Consensus size: 625
137637 ATTGGTGGGA
* * * ** *
137647 AAAATGCTTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGA-CTAAGTTTA
1 AAAA-GCTTTTCTTGCGACACCAAAGCATCAATGTCAAGTATCCTAATAAGAAGATC-AAGTTTA
* * * * * * * * *
137711 TGGTGCCTAATCATGAAAAGAATAGGGATTAGTGTGAGCATTCATGTTTATCTTATTTAAGAGAC
64 TGGTGCCCAATCCTGAAAAAAATAGAGATTAGTGTGAGTAATCATGCTTGTCTTATTTAAGAGGC
** ** * * * * * * *
137776 AAACTTTGATTCTATCCTAAATGGGGGAAA-AAAAGTTTTCTTGCGAGACCAAAGCATCAACG-T
129 AAACTTTGATTCTATCAAAAATAAGGCAAAGAAAAGTTTCCATGCAAAACAAAAGCATCAATGCT
* * * * * **
137839 CATGTATCCTATTGAAGGGACGGTAT-TTT-T-GACTCCCAATCTTGAAAA-GAATGGAGATTGT
194 -AAGTATCCTAGTGAAGGGA--GAATGTTTATAG-CTGCCAATC-TAAAAATGAATGGAGATCAT
** * * *
137900 TACGAGAATTGATGCATGTCTTATTT-AGGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAG
254 TACGAGAACCGATGCTTG-CCTATTTAAGGGGATGAACTTTGATTTTATAGAAAATAAGGCAAAG
* *
137964 AAAAGGTTTCCATGCAAAAAAAATCATCAATATCATTTCTCCTAATGAGGAATGTTCTTATAATG
318 AAAAGATTTCCATGCAAAAAAAATCATCAATATCATTTCTCCTAATGAAGAATG-TCTTATAATG
* *
138029 CCTAATCACAAAATGAATGAAGATAATTGCTAGAATCCATTTTTGTCCCATTTGAGGCATGAACT
382 CCTAATCACAAAATGAATGAAGATAATTACTAGAATCCATGTTTGTCCCATTTGAGGCATGAACT
* ** * * * *
138094 TAGACTTTTCAAAAATTGGTGGGAAAGAGGCCTTTCATGCAAAACCAAAACTTCAATATTGCGTA
447 TAGACTTTACAAAAATTGGCAGGAAAAAGGCCTTTCATGCAAAACCAAAACATCAATATCGCATA
* * *
138159 TCCTAATAAGAAGACTATGTTTATGATATCCTCAAAAGAATGAGGATTAGTATGACTATTCATTT
512 TCCTAATAAGAAGACTATGTTTATGATATCCTAAAAAGAATGAGGATTAGTATGACTATTAATGT
* * *
138224 TTGTCTTATTTAAAAGATAAACTTTGATTCCACCAAAAATGATGGAAAG
577 TTGTCTTATTTAAAAGACAAACTTTGATTCCACCAAAAATCAGGGAAAG
* * * *
138273 GAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAGAAGATTAAGTTTATG
1 AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAAGTATCCTAATAAGAAGATCAAGTTTATG
* * * * *
138338 GTGCCTAATCCTGAAAAAAATGGGGATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGGCAA
66 GTGCCCAATCCTGAAAAAAATAGAGATTAGTGTGAGTAATCATGCTTGTCTTATTTAAGAGGCAA
* * * * * * *
138403 GCTTTGATTCTATCAAAAATGAGGGAAAGAAAAGTTTTCTTGCAACACCAAAGCATCAATGCTAA
131 ACTTTGATTCTATCAAAAATAAGGCAAAGAAAAGTTTCCATGCAAAACAAAAGCATCAATGCTAA
* * * * * ** **
138468 GTATCCTATTGAAGGGAGAGTGTTTTTGGCTTCCAATCTTGAAATGAATGGAGATTGTTACGAGA
196 GTATCCTAGTGAAGGGAGAATGTTTATAGCTGCCAATCTAAAAATGAATGGAGATCATTACGAGA
* * * *
138533 ACCGATGCTTGTCTTTTTAAGGGGATGAACTTTGATTTTATAGAAAATAAGTCAGAGAAAAGATT
261 ACCGATGCTTGCCTATTTAAGGGGATGAACTTTGATTTTATAGAAAATAAGGCAAAGAAAAGATT
* * *
138598 TTCATGCAAAAGAAAATCATCAATATCATTTCTCCTAAT-AAG-CTG-CTTATAGTGCCTAATCA
326 TCCATGCAAAA-AAAATCATCAATATCATTTCTCCTAATGAAGAATGTCTTATAATGCCTAATCA
*
138660 CAAAATGAATGAAG-TTATTACTAGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGACTTT
390 CAAAATGAATGAAGATAATTACTAGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGACTTT
* *
138724 ACAAAAATTGGCAGGAAAAAGGCCTTTCTTGCGAAACCAAAACATCAATATCGCATATCCTAA-A
455 ACAAAAATTGGCAGGAAAAAGGCCTTTCATGCAAAACCAAAACATCAATATCGCATATCCTAATA
* *
138788 GAGAA-ACTATGTTTACGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTAATGTTT
520 -AGAAGACTATGTTTA---TG-AT-ATCCTAAAAAGAATGAGGATTAGTATGACTATTAATGTTT
** **
138852 GTCTTATTTAGGAGACAAACTTTGATTCCGTCAAAAA-CAGGGAAAAG
579 GTCTTATTTAAAAGACAAACTTTGATTCCACCAAAAATCAGGG-AAAG
* * * *
138899 AAAAG-TTTTCTTGTGACACCAAAGCATCAATGTCAAGTATCCTATTTAAG-GGA-CAATGTTTT
1 AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAAGTATCCTA-ATAAGAAGATCAA-GTTTA
* * * *
138961 TGGCT-CCCAATCTTGAAAAGATTAGAGATT-GT-TACGAG-AATCGGTGCTTGTCTTATTT-AG
64 TGG-TGCCCAATCCTGAAAAAAATAGAGATTAGTGT--GAGTAATC-ATGCTTGTCTTATTTAAG
* * ** * *
139021 -GGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCAT
125 AGGCA--AACTTTGATTCTATCAAAAATAAGGCAAAGAAAAG-TTTCCATGCAAAACAAAAGCAT
* ** *
139085 CAATATCT-TTTATCCTAGTG-A-GGAGAATGTACTTATAG-TGCCTAATC-AAAAATTAATGGC
187 CAAT-GCTAAGTATCCTAGTGAAGGGAGAATGT--TTATAGCTGCC-AATCTAAAAATGAATGG-
* *
139145 A-ATCATTACTAGAATCC-ATGTTTGCCTCATTTAAGG
247 AGATCATTACGAGAA-CCGATGCTTGCCT-ATTTAAGG
139181 CACGAACTTA
Statistics
Matches: 765, Mismatches: 111, Indels: 64
0.81 0.12 0.07
Matches are distributed among these distances:
621 11 0.01
622 105 0.14
623 34 0.04
624 21 0.03
625 295 0.39
626 268 0.35
627 31 0.04
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.31
Consensus pattern (625 bp):
AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAAGTATCCTAATAAGAAGATCAAGTTTATG
GTGCCCAATCCTGAAAAAAATAGAGATTAGTGTGAGTAATCATGCTTGTCTTATTTAAGAGGCAA
ACTTTGATTCTATCAAAAATAAGGCAAAGAAAAGTTTCCATGCAAAACAAAAGCATCAATGCTAA
GTATCCTAGTGAAGGGAGAATGTTTATAGCTGCCAATCTAAAAATGAATGGAGATCATTACGAGA
ACCGATGCTTGCCTATTTAAGGGGATGAACTTTGATTTTATAGAAAATAAGGCAAAGAAAAGATT
TCCATGCAAAAAAAATCATCAATATCATTTCTCCTAATGAAGAATGTCTTATAATGCCTAATCAC
AAAATGAATGAAGATAATTACTAGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGACTTTA
CAAAAATTGGCAGGAAAAAGGCCTTTCATGCAAAACCAAAACATCAATATCGCATATCCTAATAA
GAAGACTATGTTTATGATATCCTAAAAAGAATGAGGATTAGTATGACTATTAATGTTTGTCTTAT
TTAAAAGACAAACTTTGATTCCACCAAAAATCAGGGAAAG
Found at i:144834 original size:42 final size:42
Alignment explanation
Indices: 144781--144860 Score: 133
Period size: 42 Copynumber: 1.9 Consensus size: 42
144771 TTCTTCTCTC
* *
144781 CTCCTCCTATCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
*
144823 CTCCTCTTATCATCCCTCCTATCTCTACTATCTCTCCT
1 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCT
144861 CCTATCATCC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.11, C:0.45, G:0.01, T:0.42
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
Found at i:144845 original size:12 final size:11
Alignment explanation
Indices: 144814--144880 Score: 57
Period size: 12 Copynumber: 5.9 Consensus size: 11
144804 TCTATTATCT
*
144814 CTCCTGTCTCTC
1 CTCCTATCTC-C
*
144826 CTCTTATCATCC
1 CTCCTATC-TCC
144838 CTCCTATCT--
1 CTCCTATCTCC
*
144847 CTACTATCTCTC
1 CTCCTATCTC-C
144859 CTCCTATCATCC
1 CTCCTATC-TCC
144871 CTCCTATCTC
1 CTCCTATCTC
144881 TTCTTTCTCT
Statistics
Matches: 45, Mismatches: 5, Indels: 11
0.74 0.08 0.18
Matches are distributed among these distances:
9 8 0.18
11 3 0.07
12 30 0.67
13 4 0.09
ACGTcount: A:0.12, C:0.46, G:0.01, T:0.40
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:144846 original size:33 final size:33
Alignment explanation
Indices: 144809--144890 Score: 119
Period size: 33 Copynumber: 2.5 Consensus size: 33
144799 CTCTCTCTAT
* * *
144809 TATCTCTCCTGTCTCTCCTCTTATCATCCCTCC
1 TATCTCTACTATCTCTCCTCCTATCATCCCTCC
144842 TATCTCTACTATCTCTCCTCCTATCATCCCTCC
1 TATCTCTACTATCTCTCCTCCTATCATCCCTCC
* *
144875 TATCTCTTCTTTCTCT
1 TATCTCTACTATCTCT
144891 TTGAGGGCTA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 44 1.00
ACGTcount: A:0.11, C:0.43, G:0.01, T:0.45
Consensus pattern (33 bp):
TATCTCTACTATCTCTCCTCCTATCATCCCTCC
Found at i:144847 original size:24 final size:23
Alignment explanation
Indices: 144781--144848 Score: 65
Period size: 21 Copynumber: 3.1 Consensus size: 23
144771 TTCTTCTCTC
*
144781 CTCCTCCTATCATCCCTCC-TCT
1 CTCCTCTTATCATCCCTCCTTCT
*
144803 CT-CTATTATC-T--CTCCTGTCT
1 CTCCTCTTATCATCCCTCCT-TCT
144823 CTCCTCTTATCATCCCTCCTATCT
1 CTCCTCTTATCATCCCTCCT-TCT
144847 CT
1 CT
144849 ACTATCTCTC
Statistics
Matches: 36, Mismatches: 4, Indels: 10
0.72 0.08 0.20
Matches are distributed among these distances:
18 4 0.11
20 6 0.17
21 13 0.36
22 3 0.08
24 10 0.28
ACGTcount: A:0.10, C:0.46, G:0.01, T:0.43
Consensus pattern (23 bp):
CTCCTCTTATCATCCCTCCTTCT
Found at i:144861 original size:21 final size:21
Alignment explanation
Indices: 144787--144866 Score: 60
Period size: 24 Copynumber: 3.8 Consensus size: 21
144777 TCTCCTCCTC
144787 CTATCATCCCTCC--TCTCT-
1 CTATCATCCCTCCTATCTCTA
* * * *
144805 CTATTATCTCTCCTGTCTCTCCT
1 CTATCATCCCTCCTATCTCT--A
144828 CTTATCATCCCTCCTATCTCTA
1 C-TATCATCCCTCCTATCTCTA
144850 CTATC-TCTCCTCCTATC
1 CTATCATC-CCTCCTATC
144867 ATCCCTCCTA
Statistics
Matches: 49, Mismatches: 6, Indels: 11
0.74 0.09 0.17
Matches are distributed among these distances:
18 11 0.22
20 7 0.14
21 13 0.27
22 1 0.02
23 1 0.02
24 16 0.33
ACGTcount: A:0.12, C:0.44, G:0.01, T:0.42
Consensus pattern (21 bp):
CTATCATCCCTCCTATCTCTA
Found at i:147743 original size:21 final size:21
Alignment explanation
Indices: 147718--147758 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
147708 TCAGGTCTTT
147718 GTTTTCAACGAA-CCTTCCTTG
1 GTTTTCAAC-AACCCTTCCTTG
*
147739 GTTTTCATCAACCCTTCCTT
1 GTTTTCAACAACCCTTCCTT
147759 CTTCAAGAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 2 0.11
21 16 0.89
ACGTcount: A:0.17, C:0.32, G:0.10, T:0.41
Consensus pattern (21 bp):
GTTTTCAACAACCCTTCCTTG
Found at i:152074 original size:42 final size:42
Alignment explanation
Indices: 152019--152137 Score: 166
Period size: 42 Copynumber: 2.8 Consensus size: 42
152009 TTCTTCTCTC
* *
152019 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
152061 CTCCTCCTATCATCCCTCCTATGTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* * * *
152103 TTCCTCCTATCATCCCTTCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
152138 TTGAAGGCTA
Statistics
Matches: 67, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 67 1.00
ACGTcount: A:0.08, C:0.44, G:0.03, T:0.45
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:154990 original size:473 final size:472
Alignment explanation
Indices: 153797--155561 Score: 2301
Period size: 473 Copynumber: 3.7 Consensus size: 472
153787 TGACCGCAAC
*
153797 GAGAATCGATGCCCT-TCTTATTTAAGGGATGAACTTTAATTATAAT-GAAAATAGGTCAAAGAA
1 GAGAATCGATG-CCTGTCTTATTTAAGGGATGAACTTTGATT-TAATGGAAAATAGG-CAAAGAA
* * * * ** * *
153860 AAGATTTCCACGAAAAAGAAAATCATCAATATCATTTATCCTAGGGAGGAGAATGTGCTTATAGC
63 AAGATATCCATGCAAAAGAAAATCATCAATATCATTTCTCCTA-ATAAGAGAATGTGCTTATAGT
* * * * * *
153925 GCCAAATCACAAAATTAATGACGATCATTACTAGAATCCATGTTTATCTCATTTAAGGCACGGAC
127 GCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCTCATTTGAGGCATGAAC
* * * * * *
153990 TTAGGCTTTACAAAAATTGGTGGGAAAATTGCCTTTCTTGTGAAACCAAAACATCAATATCGTGT
192 TTAGACTTTAAAAAAATTGGTGGGAAAAATGCTTTTCTTGCGAAACCAAAACATCAATATCGCGT
* * * * *
154055 ATCCTAATCA-AAGGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTTGTATGACTA
257 ATCCTAATGAGAA-GACTAAGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTA
* * *
154119 TTAATGTTTGTCTTATTTAAGAGACAAGCTTTGATTCCT-TCAAAAATGAGGGAAAGAAAAGCTT
321 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT-CTATCAAAAACG-GGGAAAGAAAAG-TT
* * * *
154183 TTCTTGC-GACACCAAAGCATCAATGTTATGTATCCTATTGATGGGAATGTGCTTTTGG-TACCC
383 TTCTTGCTGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGGATGTGTTTTTGGCT-CCC
**
154246 AATCTTGGAAAGAATGGAGATTGTTGC
447 AATCTT-GAAAGAATGGAGATTGTTAT
* * *
154273 GAGAATCGATGCTTGTCTTTTTTAAGGGACGAACTTTGATTTTAA-GGAAAATAGAGCAAAGAAA
1 GAGAATCGATGCCTGTCTTATTTAAGGGATGAACTTTGA-TTTAATGGAAAATAG-GCAAAGAAA
* ** * * *
154337 AGATTTTGAAAG-AAAAGAAAGTCATCAATATCATTTCTCCTAATGAGGAGAATGTGCTTATAGT
64 AGA-TATCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAAT-AAGAGAATGTGCTTATAGT
* * * *
154401 GCCTATTCACAAAATGAATGAAGATCATTTCTAGAATCTATGTTTGTCTCATTTGAGGCATGAAC
127 GCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCTCATTTGAGGCATGAAC
*
154466 TTAGACTTTAAAAAAATTGGT-GGAAAAATGCTTTTCTTGCGAAACCGAAACATCAATATCTG-G
192 TTAGACTTTAAAAAAATTGGTGGGAAAAATGCTTTTCTTGCGAAACCAAAACATCAATATC-GCG
*
154529 TATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAATAATGGGGATTAGTATGAGTA
256 TATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTA
*
154594 TTCATGTTTGTCTTATTTTAA-AGACAAACTTTGATTCTATCAAAAACGGGGAAAAAAAAGTTTT
321 TTCATGTTTGTCTTA-TTTAAGAGACAAACTTTGATTCTATCAAAAACGGGGAAAGAAAAGTTTT
*
154658 CTTGCTGTCACCAAAGCATCAATGTCATGTATCCTATTGAAGGGGCA-GTGTTTTTGGCTCCCAA
385 CTTGCTGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGG-ATGTGTTTTTGGCTCCCAA
*
154722 TCTTGAATAGAGTGGAGATTGTTAT
449 TCTTGAA-AGAATGGAGATTGTTAT
* *
154747 GAGAATCGATGCCTGTCTTCTTTAGGGGATGAA-TATTGATTTAATGGAAAATAAGGCAAAGAAA
1 GAGAATCGATGCCTGTCTTATTTAAGGGATGAACT-TTGATTTAATGGAAAAT-AGGCAAAGAAA
* * *
154811 CGATATCCATGCAAAAGAAAATCATCAACATCATTTCTCCTAAATAAG-GAATATGCTTATAGTG
64 AGATATCCATGCAAAAGAAAATCATCAATATCATTTCTCCT-AATAAGAGAATGTGCTTATAGTG
* * * *
154875 CCTAATTACAAAATGAATGAAGATCATTGCTGGAATCTATGTTTATCTCATTTGAGGCATGAACT
128 CCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCTCATTTGAGGCATGAACT
* * * *
154940 TAGACTTTAAAAAAATTGGT-GGAAAAATGCTTTTCTTGCAAAATCGAAACATCAATATCTCGTA
193 TAGACTTTAAAAAAATTGGTGGGAAAAATGCTTTTCTTGCGAAACCAAAACATCAATATCGCGTA
* *
155004 TCCTAATGTGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGGGTATT
258 TCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATT
* **
155069 CATGTTTGTCTTATTTAAGGGACAAACTTTGATTCTATCAATCACGGGGGAAAGAAAAGTTTTC-
323 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAC-GGGGAAAGAAAAGTTTTCT
* * **
155133 TGGTGACACCAAAGCATCAATGTCAAGTATCCTATT-AAGGGGATGGTGTTTTTTACTCCCAATC
387 TGCTGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGGAT-GTGTTTTTGGCTCCCAATC
*
155197 TTGAAAAGAATGGAAATTGTTAT
451 TTG-AAAGAATGGAGATTGTTAT
* * * *
155220 GAGAATCGATACTTGTCTTATTTAGGGGATGAACTTTGATTTAATGGAAAATAAGGCAAAGAAGA
1 GAGAATCGATGCCTGTCTTATTTAAGGGATGAACTTTGATTTAATGGAAAAT-AGGCAAAGAAAA
* * * *
155285 GA-ATTCCTTGCAAAAGAAAATCATCAATATCATTTCTCCTAGTGAG-GAATGCGCTTATAGTGC
65 GATA-TCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATAAGAGAATGTGCTTATAGTGC
* * * *
155348 CTAATCACAAAATGAATGAAGATCATTACTAGAATCCGTGTTTGTCCCATTTGAGGCATGAACTC
129 CTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCTCATTTGAGGCATGAACTT
*
155413 AGACTTTACAAAAATTGGTGGGAAAAATGCTTTTTCTTGCGAAA-CAAAACATCAATATCGCGTA
194 AGACTTTAAAAAAATTGGTGGGAAAAATGC-TTTTCTTGCGAAACCAAAACATCAATATCGCGTA
* * *
155477 TCCTAATGAGAAGACTAAGTTTATTGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGAGTATT
258 TCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATT
* *
155542 CATATTTGTCTTATATAAGA
323 CATGTTTGTCTTATTTAAGA
155562 TGATGAAAAC
Statistics
Matches: 1148, Mismatches: 112, Indels: 61
0.87 0.08 0.05
Matches are distributed among these distances:
471 1 0.00
472 106 0.09
473 522 0.45
474 192 0.17
475 137 0.12
476 182 0.16
477 8 0.01
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.31
Consensus pattern (472 bp):
GAGAATCGATGCCTGTCTTATTTAAGGGATGAACTTTGATTTAATGGAAAATAGGCAAAGAAAAG
ATATCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATAAGAGAATGTGCTTATAGTGCCT
AATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCTCATTTGAGGCATGAACTTAG
ACTTTAAAAAAATTGGTGGGAAAAATGCTTTTCTTGCGAAACCAAAACATCAATATCGCGTATCC
TAATGAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCAT
GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGGGAAAGAAAAGTTTTCTTGCT
GACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGGATGTGTTTTTGGCTCCCAATCTTGAA
AGAATGGAGATTGTTAT
Found at i:157203 original size:12 final size:11
Alignment explanation
Indices: 157181--157256 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
157171 AGAGAAAGAA
*
157181 GAGAGAGGAGG
1 GAGATAGGAGG
157192 GATGATAGGAGG
1 GA-GATAGGAGG
*
157204 AGAGACAGGA--
1 -GAGATAGGAGG
*
157214 GAGATAGTA--
1 GAGATAGGAGG
157223 GAGATAGGAGG
1 GAGATAGGAGG
157234 GATGATAGGAGG
1 GA-GATAGGAGG
*
157246 AGAGACAGGAG
1 -GAGATAGGAG
157257 AGAAAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:157232 original size:42 final size:42
Alignment explanation
Indices: 157171--157289 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
157161 TAGCCCTCAA
*
157171 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGAAAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
157213 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGAAAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* * *
157255 AGAGAAAATAGAGAGAGGAGAGATGACAGGAGGAG
1 AGAGAAAGTAGAGAGAGGAGGGATGATAGGAGGAG
157290 GAGAGAAGAA
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 69 1.00
ACGTcount: A:0.45, C:0.03, G:0.45, T:0.08
Consensus pattern (42 bp):
AGAGAAAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:162909 original size:159 final size:158
Alignment explanation
Indices: 162601--177357 Score: 4401
Period size: 159 Copynumber: 93.5 Consensus size: 158
162591 ATTGGCGGGA
* * * * * *
162601 AAAAGGCTTTTCTAGCCAAACTAGAA-CATCAATATCGTATATCCTAACGAGAAGA-TAATGTTT
1 AAAA-GCTTTTCTTGCGAAACCA-AAGCATCAATATCATGTATCCTAATGAGAAGACT-ATGTTT
* **
162664 ATGGTGCCTAATCCTGAAAAGAATGGGGATTAGCATGACCATTCATGTTTGTCTTATTTAAGAGA
63 ATGGTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGA
** * *
162729 CAAACTTTGATTCCATAAAAAACGGTGGAAAG
127 CAAACTTTGATTTTATCAAAAATGGTGGAAAG
* * * * * * *
162761 GAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGCATCCTAATAAGAAGACTAAGTTTATG
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
* *
162826 GTGCCTAATCCGGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGTCAA
66 GTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* ***
162891 ACTTTGATTTTATCAAAAACGGCAAAAAG
130 ACTTTGATTTTATCAAAAATGGTGGAAAG
* * * * * * * *
162920 AAAAG-TTTTCTTACGACACCAAAGCATCAATGTCTTGTATCATATTGA-AGGGAC-AGTGTTTT
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGA-AGACTA-TGTTTA
* * * * * * * * * *
162982 TGGCT-CCCAATCTTGAAAACAGTAGAGATT-GTTATGAG-AATCGATGCTTATCTTATTTAGGG
64 TGG-TGCCTAATCCTGAAAAGAAT-GGGATTAG-TATGAGTATTC-ATGTTTGTCTTATTTAAGA
** ** *** *
163044 GATGAACTTTGATTTTATGGAAAATAAAGCAAAG
125 GACAAACTTTGATTTTATCAAAAATGGTGGAAAG
* * * * ** * * * * * * *
163078 GAAAG-ATTTCTACGCAAAAGAAAATCATCAATATCATTTATCCTAGTGAGGAGAATGTGCTTAT
1 AAAAGCTTTTCT-TGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTAT
* * * * * * * *
163142 AGTGCCAAATCAC--AAAATTAATGACGATTATTACT-AGAATCCATGTTTGTCTCATTTAA-AG
65 GGTGCCTAATC-CTGAAAA-GAATG-GGATTAGTA-TGAGTATTCATGTTTGTCTTATTTAAGAG
* *
163203 CACGAACTTAT-ACTTTA-CAAAAATTGGTGGGAAAG
126 -ACAAACTT-TGATTTTATCAAAAA-TGGT-GGAAAG
** * * * ** *
163238 --TTGCCTGTCTTGCGAAACCAAAACATCAATATCGCGTATCCTATTGAGAAGACTATGTTTATG
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
* * * * *
163301 GTACCTAAACCTAAAAATAATGGGGATTAGTATGAGTATTCGTGTTTGTCTTATTTTAA-AGACA
66 GTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTCTTA-TTTAAGAGACA
* * * *
163365 AACTTTGATTCTATCAAAAACGGGGGAAAA
129 AACTTTGATTTTATCAAAAATGGTGGAAAG
* ** * * * *
163395 AAAAG-TTTTCTTGTTGTCACCAAAGCATCAATGTCATGTATCCTATTGA-AGGGGC-AGTGTTT
1 AAAAGCTTTTCTTG-CGAAACCAAAGCATCAATATCATGTATCCTAATGAGA-AGACTA-TGTTT
* * * * * ** * ** * *
163457 TTGGCT-CCCAATCTTGAATAGAGTGGAGATT-GTTACAAG-AATCGATGCCTGTCTTCTTTAGG
63 ATGG-TGCCTAATCCTGAAAAGAATGG-GATTAG-TATGAGTATTC-ATGTTTGTCTTATTTAAG
* ** * ** * **
163519 GGATGAACATTGATTTTATGGAAAATAAG-GCTAAG
124 AGACAAACTTTGATTTTATCAAAAAT-GGTGGAAAG
* * * * * * ** * * * * * * * * *
163554 AAACGATATCCATGCAAAAGGAAATCGTCAATATCATTTCTCTTAAT-A-AGGAATATGCTTATA
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
* * * * * * * ** * *
163617 GTGCCTAAT--TACAAAATGAATGAAGATCATTGCTG-GAATCCATGTTTAACTCATTT--GAGG
66 GTGCCTAATCCT-GAAAA-GAATG-GGATTAGT-ATGAGTATTCATGTTTGTCTTATTTAAGAGA
* *
163677 CATGAACTTAT-ACTTTA-CAAAAATTGGTGGGAA-
127 CA--AACTT-TGATTTTATCAAAAA-TGGTGGAAAG
* * * * * *
163710 AAAGGCCTTTCATGCGGAACCAAAACTTCAATAT--TGCATATCCTAATGAGAAGA-TAATGTTT
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATG--TATCCTAATGAGAAGACT-ATGTTT
** * * * *
163772 ATGGTGCCTAATCCTGAAAAGGGTGGGGATTAGCATGACTATTCATGCTTGTCTTATTTAAGGGA
63 ATGGTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGA
** *
163837 CAAACTTTGATTCCATCAAAAACGGTGGAAAG
127 CAAACTTTGATTTTATCAAAAATGGTGGAAAG
* * * * * * * *
163869 GAAAGCTTTTCCTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAGTACACTAAGTTTATG
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
* * *
163934 GTGGCTAATCATGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGGGACAA
66 GTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* * *
163999 ACTTTGATTCTATCAAACATGGGGGAAAG
130 ACTTTGATTTTATCAAAAATGGTGGAAAG
* * * * **
164028 AAAAG-TTTTCTTGCGACACCAAAGCATCAATGTCAAGTATCCT-ATTA-AAGGGACGGTGTTTT
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAA--GACTATG-TTT
* ** * * * * * ** * *
164090 CTACT-CCCAATCTTGAAAAGAATGGAAATT-GTTATGAGAATTGATACTTGTCTTATTTAGGGG
63 ATGGTGCCTAATCCTGAAAAGAATGG-GATTAG-TATGAGTATTCATGTTTGTCTTATTTAAGAG
** * * * * *
164153 TTGAAA-GTTGATTTAATGGAAAATAAGG-CG-AAG
126 -ACAAACTTTGATTTTAT-CAAAA-ATGGTGGAAAG
* ** * * * ** * * * * * * *
164186 AAGAGAATTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAG--GAATGTGCTTATA
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
* * * * * * * ** *
164249 GTTCCTAATCAC--AAAATTAATGAAGATCATTACT-AGAATCCATGTTTGTCCCATTT--GAGG
66 GTGCCTAATC-CTGAAAA-GAATG-GGATTAGTA-TGAGTATTCATGTTTGTCTTATTTAAGAGA
* * *
164309 CATGAACTTAGACTTTA-CAAAAATTGGTGGGAA-
127 CA--AACTTTGATTTTATCAAAAA-TGGTGGAAAG
* * * * *
164342 AAATGCTTTTCTTGCGAAA-CAAAACATCAATATCGTGTATCCTAATGAGAAGACTAAGTTTATT
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
* * * * *
164406 GTGCCTAATCCTGGAAAGAATAGGGATTAGTATGAGTACTCATATTTGTCTTATATAAGACACAA
66 GTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* * * * *
164471 ACTTTGATTCTATAAAAAACGGGGGAAAC
130 ACTTTGATTTTATCAAAAATGGTGGAAAG
* * * * *
164500 AAAAG-TTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAATGAGAAGACTAAGTTTGTG
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
* *
164564 GTGCCTAATCC-GAAAAAGAATGGGGATTAGTTTGAGTATTCATGTTTGTCTTATTTAAGAGGCA
66 GTGCCTAATCCTG-AAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACA
* *
164628 AACTTTGATTTTATCAAAAACGG-CGACAAG
129 AACTTTGATTTTATCAAAAATGGTGGA-AAG
* * * * * * * *
164658 AAATG-TTTTCTTGC-AACACCAAAGTATCAATGTCTTGTATCTTATTGA-AGGGA-TGGTGTTT
1 AAAAGCTTTTCTTGCGAA-ACCAAAGCATCAATATCATGTATCCTAATGAGA-AGACT-ATGTTT
* * * * * * * ** *
164719 -TTGTCTCCCAATCTTGAAAACAATGTAGATT-GTTATGAG-AATCGATGCCTGTCTTATTTAGG
63 ATGGT-GCCTAATCCTGAAAAGAATG-GGATTAG-TATGAGTATTC-ATGTTTGTCTTATTTAAG
* ** ** *** *
164781 GGATGAACTTTGATTTTATTGAAAATAAAGCAAAG
124 AGACAAACTTTGATTTTATCAAAAATGGTGGAAAG
* * * ** * * * * * * * *
164816 GAAAG-ATTTCTATGCAAAAGAAAATCGTCAATATCATTTATCCTAGTGAGGAGAATGTGCTTAT
1 AAAAGCTTTTCT-TGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTAT
* ** * * * * * * * *
164880 AGCCCCAAATCAC--AAAATTAATGACGATTATTACT-AGAATCCATGTTTATCTCATTTAA-AG
65 GGTGCCTAATC-CTGAAAA-GAATG-GGATTAGTA-TGAGTATTCATGTTTGTCTTATTTAAGAG
* *
164941 CACAAACTTAGACTTTA-CAAAAATTGGTGGGAAAG
126 -ACAAACTTTGATTTTATCAAAAA-TGGT-GGAAAG
** * * * *
164976 --TTGCCTTTCTTGCGAAATCAAAACATCAATATCATGTATCCTATTGAGAAGACTATGTTTATG
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
* * * * * * *
165039 GTACCTAAACCTAAAAATAATGGGGATTTGTATGACTACTCATGTTTGTCTTATTTAAGAG-CAA
66 GTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* ** *
165103 GCTTTGATTCCATCAAAAACAGG-GGAAAG
130 ACTTTGATTTTATCAAAAA-TGGTGGAAAG
* * * * * * *
165132 AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTTATGTATCCTATTGATG-GGAATGTGCTTT-
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA-GAAGACTATG-TTTA
* ** * * * * * * *
165195 TGGTACCCCATCTTGGAAAGAATGGAGATT-GTTGTGAG-AATCGATGCTTGTCTTTTTTAAGGG
64 TGGTGCCTAATCCTGAAAAGAATGG-GATTAG-TATGAGTATTC-ATGTTTGTCTTATTTAAGAG
** *** * * *
165258 ATGAACTTTGATTTTAAGGAAAATAGAGCAAAG
126 ACAAACTTTGATTTTATCAAAAATGGTGGAAAG
* ** * * ** * * * * * * * * *
165291 AAAAGATTTTGATACAAAAGAAAATCGTCAATATCATTTCTCCTAATGAGGAGAATGTGCTTATA
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
* * * * * * ** *
165356 GTGCCTAATCC-CAAAATGAATGAAGATCATTACT-AGAATCCATGTTTGTCCCATTT--GAGGC
66 GTGCCTAATCCTGAAAA-GAATG-GGATTAGTA-TGAGTATTCATGTTTGTCTTATTTAAGAGAC
* * *
165417 ATGAACTTAGACTTTA-CAAAAATTGGGGGAAA-
128 A--AACTTTGATTTTATCAAAAA-TGGTGGAAAG
* * * * *
165449 AAAGGCTTTTCTTGCGAAACTAAAACATCAATATCGTGTATCCTAATGAGAAGACAATGTTTATG
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
* *
165514 GTGCCGAATCCTGAAAAGAATGGGGATTAGTATGACT-TTGCATGTTTGTCTTATTTAAGAGACA
66 GTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGAGTATT-CATGTTTGTCTTATTTAAGAGACA
* ** *
165578 AACTTTAATTCCATCAAAAATAGTGGAAAG
129 AACTTTGATTTTATCAAAAATGGTGGAAAG
* * * * * *
165608 GAAAGCTTTTCTTGC-AACACCAAAGCATCAATGTCGTGCATCCTAATAAGAAGACTAAGTTTAT
1 AAAAGCTTTTCTTGCGAA-ACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTAT
* * *
165672 GTTGCCTAATCCGGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAATAGACA
65 GGTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACA
* ** *
165737 AACTTTGATTTTATCAAAAACGACGAAAAG
129 AACTTTGATTTTATCAAAAATGGTGGAAAG
* * * * * *
165767 AAAAG-TTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTATTGA-AGGGAC-AGTGTTTT
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGA-AGACTA-TGTTTA
* ** * * * *
165829 TGGCT-CCCAATATTGAAAACAATGGAGATT-GTTACGAG-AATCGATGCTTGTCTTATTT-AGA
64 TGG-TGCCTAATCCTGAAAAGAATGG-GATTAG-TATGAGTATTC-ATGTTTGTCTTATTTAAGA
** ** * *
165890 GGATGAACTTTGATTTTATGGAAAATAAG-GCAAAG
125 -GACAAACTTTGATTTTATCAAAAAT-GGTGGAAAG
* * * ** * * * * * * *
165925 GAAAG-ATTTCTATGCAAAAGAAAATCATCAATATCATTTATCCTAGTGAGGAGAATGTGCTTAT
1 AAAAGCTTTTCT-TGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTAT
** * * ** * * * *
165989 AATGCCAAATCAC--AAAATTAATGACAATTATTACT-AGAATCCATGTTTGTCTCATTTAA-AG
65 GGTGCCTAATC-CTGAAAA-GAATG-GGATTAGTA-TGAGTATTCATGTTTGTCTTATTTAAGAG
* * *
166050 CACGAACTTAGACTTTA-CAAAAATTGGTGGGAAAG
126 -ACAAACTTTGATTTTATCAAAAA-TGGT-GGAAAG
** * * ** * *
166085 --TTGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTATTGAGAAGACTACGTTTATG
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
* * * * * * * *
166148 GTACCTAAACCTAAAAATAATGGGGATTTGTATGACTATTCATGTTTGTCATATTTAAGAGCCAA
66 GTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* * * *
166213 ACCTTGATTCTCTCAAAAACGGTGGAAAG
130 ACTTTGATTTTATCAAAAATGGTGGAAAG
* * * * * * *
166242 AAAAGCTTTTCATGCGACACCAGATCATCAATGTCAAGTATCTTAATGAAGGAA-A-TATGTTT-
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG-A-GAAGACTATGTTTA
* ** * ** * **
166304 TAGGTTCCTAATCCTGAAAATG-ATGGTGA-CCGCAACAAG-AATCGATGCGCT-TCTTATTTAA
64 T-GGTGCCTAATCCTGAAAA-GAATGG-GATTAG-TATGAGTATTC-ATG-TTTGTCTTATTTAA
* ** * *** *
166365 GGGATGAACTTTGATTATAAGGAAAATAGGT-CAAAG
123 GAGACAAACTTTGATTTTATCAAAAAT-GGTGGAAAG
* * ** ** ** * * * * * *
166401 AAAAGATTTCCACGTAAAAGAAAATCATCAATATCATTTATCCTAGA-GAGGAGAATCTGCTTAT
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTA-ATGAGAAGACTATGTTTAT
* * * * * * * * ** * *
166465 AGCGCCAAATCAC--AAAATTAATGACGATCATTACT-AGAAACCATATTTGTCTCATTTAAG-G
65 GGTGCCTAATC-CTGAAAA-GAATG-GGATTAGTA-TGAGTATTCATGTTTGTCTTATTTAAGAG
** * ** *
166526 CACGGACTTAGGCTTTA-CAAAAATTGGTGGGAA-
126 -ACAAACTTTGATTTTATCAAAAA-TGGTGGAAAG
** * ** * *
166559 AATTGCCTTTCTTGCGAAACCAAAGCATCAATATCGCGTATCCTAATCAGAGGACTATGTTTATG
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
*
166624 GTGCCTAATCCTGAAAAGAATGGGGA-TATGTATGACTATTCATGTTTGTCTTATTTAAGAGACA
66 GTGCCTAATCCTGAAAAGAAT-GGGATTA-GTATGAGTATTCATGTTTGTCTTATTTAAGAGACA
* ** * *
166688 AGCTTTGATTCCATCAAAAACGGGGGAAAG
129 AACTTTGATTTTATCAAAAATGGTGGAAAG
* * * * * ** * *
166718 AAAAGCATTTCTTGCGACACCAAAGCATCAATGTTATGTATCCTATTGATTAGAATGTGCTTT-T
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATG-TTTAT
* * * * * * * *
166782 GGTACCCAATCTTGGAAAGAATGGAGATT-GT-TGCGAG-AATCGATGCTTGTCTTTTTTAAGGG
65 GGTGCCTAATCCTGAAAAGAATGG-GATTAGTAT--GAGTATTC-ATGTTTGTCTTATTTAAGAG
** *** * * *
166844 ATGAACTTTGATTTTAAGGAAAATAGAGCAAAG
126 ACAAACTTTGATTTTATCAAAAATGGTGGAAAG
* ** * ** * * * * * * * *
166877 AAAAGATTTTGATAC-AAAAGAAAGTCATTAATATCATTTCTCCTAATGAGGAGAATGTGCTTAC
1 AAAAGCTTTTCTTGCGAAACCAAAG-CATCAATATCATGTATCCTAATGAGAAGACTATGTTTAT
* * * * * * * *
166941 AGTGCCTATTCAC--AAAATGAATGAAGATCATTACT-AG-AATCTATGTTTATCTCATTT--GA
65 GGTGCCTAATC-CTGAAAA-GAATG-GGATTAGTA-TGAGTATTC-ATGTTTGTCTTATTTAAGA
* * *
167000 GGCATGAACTTAGACTTTGA--AAAAATTGGTGG---G
125 GACA--AACTTTGA-TTTTATCAAAAA-TGGTGGAAAG
* ** *
167033 AAAATGCTTTTCTTGCGAAACCAAAACATCAATATCCCGTATCCTAATGAGAAGACTAAGTTTAT
1 AAAA-GCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTAT
* * *
167098 GGTGCCTAATCCTAAAAATAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTTAGAGACA
65 GGTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACA
* * *
167163 AACTTTGATTCTATCAAAAACGGGGGAAAG
129 AACTTTGATTTTATCAAAAATGGTGGAAAG
** * * * *
167193 AAAAG-TTTTCTTGCTGTCACCAAAGCATCAATGTCATGTATCCTATTGA-AGGGGC-AGTGTTT
1 AAAAGCTTTTCTTGC-GAAACCAAAGCATCAATATCATGTATCCTAATGAGA-AGACTA-TGTTT
* * * * * * * * *** * * *
167255 TTGGCT-CCCAATCTTGAATAGAGTGGAGATT-GT-TGCGCGAATCGATGCCCGTTTTCTTTAGG
63 ATGG-TGCCTAATCCTGAAAAGAATGG-GATTAGTATGAG-TATTC-ATGTTTGTCTTATTTAAG
* ** * * ** * *
167317 GGATGAACATTGATTTAATGGAAAATAAG-GCAAAG
124 AGACAAACTTTGATTTTATCAAAAAT-GGTGGAAAG
* * * * * * ** * * * ** * *
167352 AAACGATATCCATGCAAAAGAAAATCATCAATATCATTTCTCCTCCTGAG--GAATGTGCTTTAT
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATG-TTTAT
* * * * * * ** *
167415 AGTGCCTAATCAC--AAAATGAATGAAGATCATTACT-AGAATCCATGTTTGTCCCATTTGAG-G
65 GGTGCCTAATC-CTGAAAA-GAATG-GGATTAGTA-TGAGTATTCATGTTTGTCTTATTTAAGAG
* ** * *
167476 CACGAACTCAGACTTTA-CAAAAATTGGTGGGAA-
126 -ACAAACTTTGATTTTATCAAAAA-TGGTGGAAAG
** ** *** * * *
167509 AATTGCTTTTCTTGCGAAA-CAAAATATCAATATCGCATATCCTAATGACAAGACTAAGTTTATT
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
* * *
167573 GTGCCTAATCTTGAAAAGAATAGGG-TTAGTATGAGTATTCATATTTGTCTTATATAAGAGACAA
66 GTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* * * *
167637 ACTTTGATTCTATAAAAAACGGGGGAAAG
130 ACTTTGATTTTATCAAAAATGGTGGAAAG
* * * * * ** *
167666 AAAAG-TTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTATTGA-AGGGACGGTGTTTTT
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGA-AGACTATGTTTAT
* * * * * * * *
167729 GGCT-CCCAGTCTTGAAAAGAATGGAGATTGGTACGAG-AATCGATGCTTGTCTTATTT-AG-GG
65 GG-TGCCTAATCCTGAAAAGAATGG-GATTAGTATGAGTATTC-ATGTTTGTCTTATTTAAGAGA
* ** * *
167790 CTGAACTTTGATTTTATGGAAAATAAG-GCAAAG
127 C-AAACTTTGATTTTATCAAAAAT-GGTGGAAAG
* * * * ** * * * * ** * *
167823 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAG--GAATGCGCTTATA
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
* * * * * * * ** * ** *
167886 GTGCCAAATCC-CAAAATGAATGAAGATCATTACT-AGAATCCATGTTTGTCCCATTTGAGTCAT
66 GTGCCTAATCCTGAAAA-GAATG-GGATTAGTA-TGAGTATTCATGTTTGTCTTATTTAAGAGAC
* * * **
167949 AAACTTAGACTTTA-CAAAAATTGACGAGAA-
128 AAACTTTGATTTTATCAAAAATGGTGGA-AAG
* * * * *
167979 AAAGGCTTTTCTTGCGAAACTAAAACATCAATATCATGTATCCTAACGAGAAGACAATGTTTATG
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
* *
168044 GTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAA
66 GTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
** *
168109 ACTTTGATTCCATCAAAAACGGTGGAAAG
130 ACTTTGATTTTATCAAAAATGGTGGAAAG
* * * * * * *
168138 GAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGCATCCTAATAAGAAGACTAAGTTTATG
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
* ** *
168203 ATGCCTAATCCAAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTCATTTAAGAGACAA
66 GTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* * *
168268 ACTTTGATTTTATCAAAAACGGCGAAAAG
130 ACTTTGATTTTATCAAAAATGGTGGAAAG
* * * * * * ** *
168297 AAAAG-TTTTCTTGTGACACCAAAGCATCAATGTCTTGTATCCTATTGA-AGGGACGGTGTTTTT
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGA-AGACTATGTTTAT
* * * * * * * *
168360 GGCT-CCCAATCTTGAAAACAATGGAGATT-GTTATGAG-AATCAATGCTTGCCTTATTTAGGGG
65 GG-TGCCTAATCCTGAAAAGAATGG-GATTAG-TATGAGTATTC-ATGTTTGTCTTATTTAAGAG
** ** * *
168422 ATGAACTTTGATTTTATGGAAAATAAG-GCAAAG
126 ACAAACTTTGATTTTATCAAAAAT-GGTGGAAAG
* * ** * * * * * * *
168455 GAAAG-ATTTCTCTGC-ACAAGAAAATCATCAATATCATTTATCCTAGTGAGGAGAATGTGCTTA
1 AAAAGCTTTTCT-TGCGA-AACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTA
* * * * * * * *
168518 TGGCGCCAAATCAC--AAAATTAATGATGATTATTACT-AGAATCCATGTTTGTCTCATTTAA-A
64 TGGTGCCTAATC-CTGAAAA-GAATG-GGATTAGTA-TGAGTATTCATGTTTGTCTTATTTAAGA
* *
168579 GCACAAACTTAGACTTTA-CAAAAATTGGTGGGAAAG
125 G-ACAAACTTTGATTTTATCAAAAA-TGGT-GGAAAG
** * ** * ** * *
168615 --TTGCCTTTCTTGCGAAACCAAAATATCAATAACGCGTATCCTATTGAGAAGACTACGTTTATG
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
* * * * * * * *
168678 GTACCTACA-CCTAAAAATAATGGGGATTTGTATGACTATTCATATTTGTCATATTTAAGAGCCA
66 GTGCCTA-ATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACA
* * * *
168742 AACCTTGATTCTATCAAATACGGTGGAAAG
129 AACTTTGATTTTATCAAAAATGGTGGAAAG
* * * * * * *
168772 AAAAGCTTTTCATGCGACACCAGAGCATCAATGTCAAGTATCTTAATGA-AGGACATATGTTT-T
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAC-TATGTTTAT
* ** * * * **
168835 AGGTTCCTAATCCTGAAAATG-ATGGTGA-CCGCAACGAG-AATCGATGCCCT-TCTTATTTAAG
65 -GGTGCCTAATCCTGAAAA-GAATGG-GATTAG-TATGAGTATTC-ATG-TTTGTCTTATTTAAG
* ** * * * *** *
168896 GGATGAACTTCGACTATAAGGAAAATAGGT-AAAAG
124 AGACAAACTTTGATTTTATCAAAAAT-GGTGGAAAG
* * ** ** * * * * * * *
168931 AAAAGATTTCCACG-GAAAAGAAAATCATCAATATCATTTATCCTAGTGAGGAGAATGTGCTTAT
1 AAAAGCTTTTCTTGCG-AAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTAT
* * * * * * * * * * *
168995 AGCGCCAAATCAC--AAAATTAATGACGATCATTACT-AGAATCCATGTTTATCTCATTTAAG-G
65 GGTGCCTAATC-CTGAAAA-GAATG-GGATTAGTA-TGAGTATTCATGTTTGTCTTATTTAAGAG
** * ** *
169056 CACGGACTTAGGCTTTA-CAAAAATTGGTGGGAA-
126 -ACAAACTTTGATTTTATCAAAAA-TGGTGGAAAG
** * * ** * *
169089 AATTGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATCAGAGGACTATGTTTATG
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
* * *
169154 GTGCCTAATCCTGAAAAGAACGGGGATTTGTATGACTATTCATGTTTGTCTTATTTAAGAGACAA
66 GTGCCTAATCCTGAAAAGAA-TGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* * * *
169219 GCTTTGATTCCT-TCAAAAACGGGGGAAAG
130 ACTTTGATT-TTATCAAAAATGGTGGAAAG
* * * * * * * *
169248 AAAAGCATTTCTTGCGACACCAAAGCATCAATGTTATGTATCCTATTGATG-GGAATGTGCTTT-
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA-GAAGACTATG-TTTA
* * * * * * *
169311 TGGTACCTAATCTTGGAAAGAATGGAGATT-GT-TGCGAG-AATCGATGCTTGTCTTTTTTAAGG
64 TGGTGCCTAATCCTGAAAAGAATGG-GATTAGTAT--GAGTATTC-ATGTTTGTCTTATTTAAGA
** *** * * *
169373 GATGAACTTTGATTTTAAGGAAAATAGAGCAAAG
125 GACAAACTTTGATTTTATCAAAAATGGTGGAAAG
* **** ** * * * ** * * *
169407 AAAAGATTTT-GAAAGAAAAGAAAGTCATCAGTATCATTTCTCCTAATGAGGTGAATGTGCTTAT
1 AAAAGCTTTTCTTGCGAAACCAAAG-CATCAATATCATGTATCCTAATGAGAAGACTATGTTTAT
** * * * * * *
169471 AATGCCTATTCAC--AAAATGAATGAAGATCATTACT-AG-AATCTATGTTTGTCTCATTT--GA
65 GGTGCCTAATC-CTGAAAA-GAATG-GGATTAGTA-TGAGTATTC-ATGTTTGTCTTATTTAAGA
* * * *
169530 GGCATGAACTTAGACTTTA-AAAAAATTGGTGG-AA-
125 GACA--AACTTTGATTTTATCAAAAA-TGGTGGAAAG
* * ** *
169564 AAATGCTTTTCTTGTGAAACCGAAA-CATCAATATCCCGTATCCTAATGAGAAGACTAAGTTTAT
1 AAAAGCTTTTCTTGCGAAACC-AAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTAT
*
169628 GGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTTAA-AGAC
65 GGTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTCTTA-TTTAAGAGAC
* * * *
169692 AAACTTTGATTCTATCAAAAACGGGGGAAAA
128 AAACTTTGATTTTATCAAAAATGGTGGAAAG
** * * * * *
169723 AAAAG-TTTTCTTGCTGTCACCAAAGCATCAATGTCATATATCCTATTGA-AGGGGC-AGTGTTT
1 AAAAGCTTTTCTTGC-GAAACCAAAGCATCAATATCATGTATCCTAATGAGA-AGACTA-TGTTT
* * * * * * * ** * *
169785 TTGGCT-CCCAAT-CTTAAATGGAGTGGAGATT-GTTACGAG-AATCGATGCCTGTCTTCTTTAG
63 ATGG-TGCCTAATCCTGAAA-AGAATGG-GATTAG-TATGAGTATTC-ATGTTTGTCTTATTTAA
* ** * ** * *
169846 GGGATGAA-TATTGATTTAATGGAAAATAAG-GCAAAG
123 GAGACAAACT-TTGATTTTATCAAAAAT-GGTGGAAAG
* * * * * * ** * * * * * *
169882 AAACGGTATCCATGCAAAAGAAAATCATCAACATCATTTCTCCTAAAT-ATG--GAATATGCTTA
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCT-AATGA-GAAGACTATGTTTA
* * * * * * * * *
169944 TAGTGCCTAAT--TACAAAATGAATGAAGATCA-T-TGCTGGAATCTATGTTTATCTCATTT--G
64 TGGTGCCTAATCCT-GAAAA-GAATG-GGATTAGTATG-AGTATTC-ATGTTTGTCTTATTTAAG
* * * *
170003 AGGCATGAACTTCGACTTTA-CAAAAATTGGTGGGAA-
124 AGACA--AACTTTGATTTTATCAAAAA-TGGTGGAAAG
* * * * * * *
170039 AAAGGCCTTTCATGCGGAACCAAAACATCAATAT--TGCATATCCTAATGAGAAGACAATGTTTG
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATG--TATCCTAATGAGAAGACTATGTTTA
** * * * *
170102 TGGTGCCTAATCCTGAAAAGGGTGGGGATTAGAATGAATATTCATGCTTGTCTTATTTAAGGGAC
64 TGGTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAC
** *
170167 AAACTTTGATTCCATCAAAAATGGTGGAGAG
128 AAACTTTGATTTTATCAAAAATGGTGGAAAG
* * * * * * * * *
170198 GAAAGCTTTTCTTCCGACACCAAAGCATCAATGTCGTGTATCCTATTGAGTACACTAAGTTTATG
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
* * * * *
170263 GTGCCTAATCATGAAATGAATGGGGATTAGTATGGGTATTCATGTTTGTCTTATCTAAGGGACAA
66 GTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* ** * *
170328 ACTTTGATTCTATCAATCACGGGGGAAAG
130 ACTTTGATTTTATCAAAAATGGTGGAAAG
* * * * * * *
170357 AAAAG-TTTTCTGGTGACACCAAAGCATCAATGTCAAGTATCCT-ATTA-AAGGGA-TGGTGTGT
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAA--GACT-ATGT-T
* ** * * * * ** * *
170418 TTTACT-CCCAATCTTGAAAAGAATGGAAATT-GTTATGAG-AATCGATACTTATCTTATTTAGG
62 TATGGTGCCTAATCCTGAAAAGAATGG-GATTAG-TATGAGTATTC-ATGTTTGTCTTATTTAAG
* ** * ** * *
170480 GGATGAACTTTGATTTAATGGAAAATAAG-GCAAAG
124 AGACAAACTTTGATTTTATCAAAAAT-GGTGGAAAG
* * * ** * * * * * * *
170515 AAGAGAC-TTCCTTGCAAAAGAAAATCATCAATATCATTTCTCCTAGTGAG--GAATGTGCTTAT
1 AAAAG-CTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTAT
* * * * * * * **
170577 AGTGCCTAATCAC--AAAATGAATGAAGATCATTACT-AGAATCCAAGTTTGTCCCATTT--GAG
65 GGTGCCTAATC-CTGAAAA-GAATG-GGATTAGTA-TGAGTATTCATGTTTGTCTTATTTAAGAG
* ** * * *
170637 GCATGAACTCAGACTTTA-CAAAAATTGGCGGGAA-
126 ACA--AACTTTGATTTTATCAAAAA-TGGTGGAAAG
* * * *
170671 AAATGCTTTTTCTTGCGAAA-CAAAACATCAATATCACGTATCCTAATGAGAAGACTAAGTTTAT
1 AAAAGC-TTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTAT
* * * **
170735 TGTGCCTAATCTTGAAAAGAATAGGGATTAGTATGAGTATTCATATTTGTCTTATACAAGAGACA
65 GGTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACA
* * * *
170800 AACTTTGATTCTATAAAAAACGGGGGAAAG
129 AACTTTGATTTTATCAAAAATGGTGGAAAG
* * * * *** *
170830 AAAAG-TTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTATTGA-AGAGAGGGTGTTTTT
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGA-AGACTATGTTTAT
* * * * * * * *
170893 GGCT-CCCAATCTTGAAAAGAATAGAGATTGGTACGAG-AATCGATGCTTGTCTTATTT-AG-GG
65 GG-TGCCTAATCCTGAAAAGAAT-GGGATTAGTATGAGTATTC-ATGTTTGTCTTATTTAAGAGA
* * ** * *
170954 CTGAACTTTGATTTAATGGAAAATAAG-GCAAAG
127 C-AAACTTTGATTTTATCAAAAAT-GGTGGAAAG
* * * ** * * * * * * *
170987 AAGAGAC-TTCCTTGCAAAAGAAAATCATCAATATCATTTCTCCTAGTGAG--GAATGTGCTTAT
1 AAAAG-CTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTAT
* * * * * * ** *
171049 AGTGCCTAATCAC--AAAATGAATGAAGATCATTACT-AGAATCCATGTTTGTCCCATTTGAGTA
65 GGTGCCTAATC-CTGAAAA-GAATG-GGATTAGTA-TGAGTATTCATGTTTGTCTTATTTAAG-A
* * * * *
171111 -ATAAACTTAGACTTT-TCAAAAATTGGCGGGAA-
125 GACAAACTTTGATTTTATCAAAAA-TGGTGGAAAG
* * * * * *
171143 AAAGGCTTTTCTTGCGAAACTAAAACATCAATATCGTGTATCCTAACGAGAAGACAATGTTTATG
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
* * *
171208 GTGCCTAATCTTGAAAAGAATGGGGATTAGCATGACTATTCATGTTTGTCTTATTTAAGAGACAA
66 GTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
**
171273 ACTTTGATTCCATCAAAAATGGTGGAAAG
130 ACTTTGATTTTATCAAAAATGGTGGAAAG
* * * * * * * * *
171302 GAAAGCTTTTCTTGCGACACTAAAGCATCAATGTCGTGCATCCTAATAAGAAGACAAAGTTTATG
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
*
171367 GTGCCTAATCCGGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTC----TT----GACAA
66 GTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* * *
171424 ACTTTGATTTTATCAAAAACGGCGAAAAG
130 ACTTTGATTTTATCAAAAATGGTGGAAAG
* * * * * * **
171453 AAAAG-TTTTCTTGCGACACCAAAGCATCAATGTCTTGCATCCTATTGA-AGGGACGGTGTTT-T
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGA-AGACTATGTTTAT
* * * * * * * * *
171515 GGCT-CCCAATCTTGAAAACAATAGAGATT-GTTATGAGAATTAATGGTTGTCTTATTTAGGGGA
65 GG-TGCCTAATCCTGAAAAGAAT-GGGATTAG-TATGAGTATTCATGTTTGTCTTATTTAAGAGA
** ** *** *
171578 TGAACTTTGATTTTATGGAAAATAAAGCAAAG
127 CAAACTTTGATTTTATCAAAAATGGTGGAAAG
* * * ** * * * * *
171610 GAAAG--TTTCTACGCAAAAGAAAATCATCAATATCATTTATCCTAGTGA-AGAGAATGTGTTTA
1 AAAAGCTTTTCT-TGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGA-AGACTATGTTTA
* * * * * * * * *
171672 TAGTGCCAAATCAC--AAAATAAATGACGATTATTACT-AGAATCCATGCTTGTCTGATTTAA-A
64 TGGTGCCTAATC-CTGAAAA-GAATG-GGATTAGTA-TGAGTATTCATGTTTGTCTTATTTAAGA
* * * * *
171733 GCACGAACCTAGACTTTA-CAAAAATTGGTGGGAA-
125 G-ACAAACTTTGATTTTATCAAAAA-TGGTGGAAAG
*** * * * ** * *
171767 ACTTGCCTGTCTTGCGAAACCAAAACATCAATATCGCGTATCCTATTGAGAAGACTACGTTTATG
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
* * * *
171832 GTACCTAAACCTAAAAATAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTTAA-AGACA
66 GTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTCTTA-TTTAAGAGACA
* * *
171896 AACTTTGATTCTATCAAAAACGGGGGAAA-
129 AACTTTGATTTTATCAAAAATGGTGGAAAG
* * * * * *
171925 AAAAG-TTTTCTTGCTATCACCAAAGCATCAATGTCATGTATCCTATTGA-AGGGGC-AGTGTTT
1 AAAAGCTTTTCTTGCGA-AACCAAAGCATCAATATCATGTATCCTAATGAGA-AGACTA-TGTTT
* * * * * ** * ** * *
171987 TTGGCT-CCCAATCTTGAATAGAGTGGAGATT-GTTACAAG-AATCGATGCCTGTCTTCTTTAGG
63 ATGG-TGCCTAATCCTGAAAAGAATGG-GATTAG-TATGAGTATTC-ATGTTTGTCTTATTTAAG
* ** * ** * **
172049 GGATGAACATTGATTTTATGGAAAATAAG-GCTAAG
124 AGACAAACTTTGATTTTATCAAAAAT-GGTGGAAAG
* * * * * * ** * * * * * * * * *
172084 AAACGATATCCATGCAAAAGGAAATCGTCAATATCATTTCTCTTAAT-A-AGGAATATGCTTATA
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
* * * * * * ** * *
172147 GTGCCTAAT--TACAAAATGAATGAAGATCATTACTG-GAATCCATGTTTAACTCATTT--GAGG
66 GTGCCTAATCCT-GAAAA-GAATG-GGATTAGTA-TGAGTATTCATGTTTGTCTTATTTAAGAGA
* *
172207 CATGAACTTAT-ACTTTA-CAAAAATTGGTGG-GA-
127 CA--AACTT-TGATTTTATCAAAAA-TGGTGGAAAG
* * * * * *
172239 AAAAGACCTTTCATGTGGAACCAAAACTTCAATAT--TGCATATCCTAATGAGAAGA-TAATGTT
1 AAAAG-CTTTTCTTGCGAAACCAAAGCATCAATATCATG--TATCCTAATGAGAAGACT-ATGTT
** * * ** *
172301 TATGGTGCCTAATCCTGAAAAGGGTGGGGATTAGCATGACTATTCATACTTGTCTTATTTAAGGG
62 TATGGTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAG
** *
172366 ACAAACTTTGATTCCATCAAAAACGGTGGAAAG
126 ACAAACTTTGATTTTATCAAAAATGGTGGAAAG
* * * * * * * *
172399 GAAAGCTTTTCCTAC-AACACCAAAGCATCAATGTCATGTATCCTATTGAGTACACTAAGTTTAT
1 AAAAGCTTTTCTTGCGAA-ACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTAT
* * *
172463 GGTGCCTAATCATGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTTTTATTTAAGGGACA
65 GGTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACA
* * *
172528 AACTTTGATTCTATCAAACATGGGGGAAAG
129 AACTTTGATTTTATCAAAAATGGTGGAAAG
* * * *
172558 AAAAG-TTTTCTTGCGACACCAAAGCATCAATATCAGGTATCCT-ATTA-AAGGGA-TGGTGTTT
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAA--GACT-ATG-TT
* ** * * * * ** *
172619 TCTACT-CCCAATCTTGAAAAGAATGGAAATT-GTTATGAG-AATCGATACTTGTCTTATTTAGG
62 TATGGTGCCTAATCCTGAAAAGAATGG-GATTAG-TATGAGTATTC-ATGTTTGTCTTATTTAAG
* ** * * * *
172681 GGTTGAAA-GTTGA-TTTAGTGGAAAATAAGG-CG-AAG
124 AG-ACAAACTTTGATTTTA-T-CAAAA-ATGGTGGAAAG
* ** * * * ** * * * * * * *
172716 AAGAGAATTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAG--GAATGTGCTTATA
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
* * * * * ** *
172779 GTGCCTAATCAC--AAAATGAATGAAGATCATTACT-AGAATCCATGTTTGTCCCATTT--GAGG
66 GTGCCTAATC-CTGAAAA-GAATG-GGATTAGTA-TGAGTATTCATGTTTGTCTTATTTAAGAGA
* * *
172839 CATGAACTTAGACTTTA-CAAAAATTGGTGGGAA-
127 CA--AACTTTGATTTTATCAAAAA-TGGTGGAAAG
* * * * *
172872 AAATGCTTTTCTTGCGAAA-CAAAACATCAATATCGTGTATCCTAATGAGAAGACTAAGTTTATT
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
* * * *
172936 GTGCCTAATCCTGGAAAGAATAGGGATTAGTATGAGTACTCATATTTGTCTTATATAAGAGACAA
66 GTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* * * *
173001 ACTTTGATTCTATAAAAAAACGGGGGAAAG
130 ACTTTGATTTTAT-CAAAAATGGTGGAAAG
* ** * * * * * *
173031 AAAAG-TTTTCTTGTGACCCCAAAGCATCATTGTCATGTATCCTATTGA-AGGGA-TGGTGTTTT
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGA-AGACT-ATGTTTA
* * * * * *
173093 TGGCT-CCCAATCTTGAAAAGAATGGAGATT-GTTACGAG-AATCGATGCTTGTCTTACTT-AG-
64 TGG-TGCCTAATCCTGAAAAGAATGG-GATTAG-TATGAGTATTC-ATGTTTGTCTTATTTAAGA
* ** * *
173153 GGCTAAACTTTGATTTTATGGAAAATAAG-GCAAAG
125 GAC-AAACTTTGATTTTATCAAAAAT-GGTGGAAAG
* * * * ** * * * * ** * *
173188 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTTTCCTAATGAG--GAATGCGCTTATA
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
* * * * * * ** *
173251 ATGCCTAATCC-CAAAATGAATGAGGATCATTACT-AGAATCCATGTTTGTCCCATTT--GAGGC
66 GTGCCTAATCCTGAAAA-GAATG-GGATTAGTA-TGAGTATTCATGTTTGTCTTATTTAAGAGAC
* * *
173312 ATGAACTTAGACTTTA-CAAAAATTGG-GG--GG
128 A--AACTTTGATTTTATCAAAAA-TGGTGGAAAG
* * * * *
173342 AAAAGGATTTTCTTGCGAAACTAAAACATCAATATCGTGTATCCTAATGAGAAGACAATGTTTAT
1 AAAA-GCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTAT
*
173407 GGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACA
65 GGTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACA
* * * * **
173472 AACTTTAATTCTGTCGAAAACAGTGGAAAG
129 AACTTTGATTTTATCAAAAATGGTGGAAAG
* * * * * * * *
173502 GAAAGCTATTCTTGCGACACCAAAGCATCAATGTCGTGCATCCTAATGAGAAGACTAAGTTTGTG
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
* * *
173567 GTGCCTAATCCGGAAAAGAATGGGGATTAGTTTGAGCATTCATGTTTGTCTTATTTAAGAGACAA
66 GTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* ** *
173632 ACTTTGATTTTATAAAAAACAG-CGACAAG
130 ACTTTGATTTTATCAAAAATGGTGGA-AAG
* * * * * * * **
173661 AAAAG-TTTTCTTGCGACACCAAAGTATCAATGTCTTGTATCTTATTGA-AGGGACGGTGTTT-T
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGA-AGACTATGTTTAT
* * * * * * * * *
173723 -GTCTCCCAATCTTGAAAACAATGTAGATT-GTTATGAG-AATCGATGCTTGTCTTATTTAGGGG
65 GGT-GCCTAATCCTGAAAAGAATG-GGATTAG-TATGAGTATTC-ATGTTTGTCTTATTTAAGAG
** **
173785 ATGAACTTTGATTTTATGGAAAA---T--AAAG
126 ACAAACTTTGATTTTATCAAAAATGGTGGAAAG
* ** * * * * * * *
173813 ---A---TTTCTATGCAAAAGAAAATCATCAATATCATTTATCCTAGTGAGGAGAATGTGCTTAT
1 AAAAGCTTTTCT-TGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTAT
* * * * * * * * *
173872 AGTGCCAAATCAC--AAAATTAATGACGATTATTACT-AGAATCCATGTTTATCTCATTTAA-AG
65 GGTGCCTAATC-CTGAAAA-GAATG-GGATTAGTA-TGAGTATTCATGTTTGTCTTATTTAAGAG
* *
173933 CACAAACTTAGACTTTA-CAAAAATTGGTGAGAAAG
126 -ACAAACTTTGATTTTATCAAAAA-TGGTG-GAAAG
** * * * * *
173968 --TTGCCTTTCTTGCGAAATCAAAACATCAATATCACGTATCCTATTGAGAAGACTATGTTTATG
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
* * * * * * *
174031 GTACCTAAACCTAAAAATAATGGGGATTTGTATGACTACTCATGTTTGTCTTATTTAAGAGACAA
66 GTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* *** * *
174096 GCTTTGATTCCGTCAAAAACGGGGGAAAG
130 ACTTTGATTTTATCAAAAATGGTGGAAAG
* * ** * * * *
174125 AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTTTTGTATCCTATTGATG-GGAATGTGCTTT-
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA-GAAGACTATG-TTTA
* * * * * * * *
174188 TGGTACCCAATCTTGAAAAGAATGGAGAAT-GT-TGCGAG-AATCGATGCTTGTCTTTTTTAAGG
64 TGGTGCCTAATCCTGAAAAGAATGG-GATTAGTAT--GAGTATTC-ATGTTTGTCTTATTTAAGA
** * * *
174250 GA-ATAACTTTGATTTTATGGAAAATAGAGCAAAG
125 GACA-AACTTTGATTTTATCAAAAATGGTGGAAAG
* ** * ** * * * * * * * *
174284 AAAAGATTTTGATAC-AAAAGAAATCATCAATATCATTTCTCCTAATGAGGAGAATGTGCTTATA
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
* * * * * * *
174348 GTGCCTAATCC-CAAAATGAATGAAGATCATTACT-AG-AATCTATGTTTGTCTCATTT--GAGG
66 GTGCCTAATCCTGAAAA-GAATG-GGATTAGTA-TGAGTATTC-ATGTTTGTCTTATTTAAGAGA
* * *
174408 CATGAACTTAGACTTTA--AAAATTGGTGG---G
127 CA--AACTTTGATTTTATCAAAAATGGTGGAAAG
*
174437 AAAATGCTTTTCTTGCGAAACCGAAA-CATCAATATC-TCGTATCCTAATGAGAAGACTAAGTTT
1 AAAA-GCTTTTCTTGCGAAACC-AAAGCATCAATATCAT-GTATCCTAATGAGAAGACTATGTTT
* * * *
174500 AAGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATAAGTATTCATGTTTGTCTTATTTTAGAGA
63 ATGGTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGA
* *
174565 CAAACTTTGATTCTATCAAAAATGGGGGAAAG
127 CAAACTTTGATTTTATCAAAAATGGTGGAAAG
** * * * ** * *
174597 AAAAG-TTTTCTTGCTGTCACCAAAGCATCAATGTCATGTATCCTATTGA-AGGGGTAGTCTTTT
1 AAAAGCTTTTCTTGC-GAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTA-TGTTTA
* * * * * * ** * * *
174660 TGGCT-CCCAATCTTGAATAGAGTGGAGATT-GTTATGAGAATTGATGCCTGTCTTCTTTAGGGG
64 TGG-TGCCTAATCCTGAAAAGAATGG-GATTAG-TATGAGTATTCATGTTTGTCTTATTTAAGAG
** * ** * *
174723 ATGAACATTGATTTTATGGAAAATAAG-GCAAAG
126 ACAAACTTTGATTTTATCAAAAAT-GGTGGAAAG
* * * * * * ** * * * * * * *
174756 AAACGATATCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAAT-A-AGGAATATGCTTATA
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
* * * * * * * * * * * *
174819 GTGCCGAAT--TACAAAATGAATGAAGATCATTGCTG-GAATCCAAGTTTATCTCATTT--GAGG
66 GTGCCTAATCCT-GAAAA-GAATG-GGATTAGT-ATGAGTATTCATGTTTGTCTTATTTAAGAGA
* * *
174879 CATGAACTTAGACTTTA-CAAAAATTGGTGGGAA-
127 CA--AACTTTGATTTTATCAAAAA-TGGTGGAAAG
* * * * * *
174912 AAAGGCCTTTCATGC-AGAACCAAAACATCAATAT--TGCATATCCTAATGAGAAGACAACGTTT
1 AAAAGCTTTTCTTGCGA-AACCAAAGCATCAATATCATG--TATCCTAATGAGAAGACTATGTTT
* ** * * * *
174974 GTGGTGCCTAATCCTGAAAAGGGTGGGGATTAGCATGACTATTCATGCTTGTC----TTAAGGGA
63 ATGGTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGA
** * *
175035 CAAACTTTGATTCCATAAAAAACGGTGGAAAG
127 CAAACTTTGATTTTATCAAAAATGGTGGAAAG
* * * * * *
175067 GAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCT-ATTA-AAGGGA-TGGTGTTT
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAA--GACT-ATG-TT
* ** * * * * * *
175129 TCTACT-CCCAATCTTGAAAAGAATGGAAATT-GTTATGAG-AATCGATGCTTGTCTTATTTAGG
62 TATGGTGCCTAATCCTGAAAAGAATGG-GATTAG-TATGAGTATTC-ATGTTTGTCTTATTTAAG
* ** * ** * *
175191 GGATGAACTTTGATTTAATGGAAAATAAG-GCAAAG
124 AGACAAACTTTGATTTTATCAAAAAT-GGTGGAAAG
* ** * * ** * * * * * * *
175226 AAGAGAATTCCTTGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAG--GAATGTGCTTATA
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
* * * * ** *
175289 GTGCCTAATCAC--AAAAGGAATGAAGATCATTACTTGA--ATCCATGTTTGTCCCAATT--GAG
66 GTGCCTAATC-CTGAAAA-GAATG-GGATTAGTA--TGAGTATTCATGTTTGTCTTATTTAAGAG
* ** * *
175348 GCATGAACTCAGACTTTA-CAAAAATTGGTGGGAA-
126 ACA--AACTTTGATTTTATCAAAAA-TGGTGGAAAG
* * *** * *
175382 AAATGCTTTTCTTGCGAAA-CAAAACATCAATATCGCATATCCTAATGAGAAGACTAAGTTTATT
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
* * *
175446 GTGCCTAATCCTGAAAAGAATAGGGATTTGTATGAGTATTCATATTTGTCTTATATAAGAGACAA
66 GTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* * * *
175511 ACTTTGATTCTATAAAAAACGG-GGAGAG
130 ACTTTGATTTTATCAAAAATGGTGGAAAG
* ** * * * ** *
175539 AAAAG-TTTTCTTGTGGCACCAAAGCATCAATGTCATGTATCCTATTGA-AGGGACGGTGTTTTT
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGA-AGACTATGTTTAT
* ** * * * *
175602 GGCT-CCCAATTTTGAAAAGAATGGAGATT-GTTACGAG-AATCGATGCTTGCCTTATTT-AGAG
65 GG-TGCCTAATCCTGAAAAGAATGG-GATTAG-TATGAGTATTC-ATGTTTGTCTTATTTAAGAG
* ** * * *
175663 -CTGAACTTTGATTTTATGGAATATAAG-GCAAAG
126 AC-AAACTTTGATTTTATCAAAAAT-GGTGGAAAG
* * * * ** * * * * * ** *
175696 AAAAGATTTCCATAC-AAAAGAGAATCATCAATATCATTTCTGCTAATGAG--GAATGCGCTTAT
1 AAAAGCTTTTCTTGCGAAACCA-AAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTAT
* * * * * * * * ** *
175758 AGTGCCTAATCC-CAAAATGAATGAGGATCATTACT-AGAATCCTTTTTTGTCCCATTT--GAGG
65 GGTGCCTAATCCTGAAAA-GAATG-GGATTAGTA-TGAGTATTCATGTTTGTCTTATTTAAGAGA
* *
175819 CATGAACTTAGACTTTA-CAAAAATTGG-GGAGAA-
127 CA--AACTTTGATTTTATCAAAAA-TGGTGGA-AAG
* * * * * *
175852 AAAGGATTTTCTTGCGAAACTAAAACATCAATATCGTGTATCCTAATGAGAAGACAATGTTTATG
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
*
175917 GTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAA
66 GTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* ** *
175982 ACTTTAATTCCATCAAAAACGGTGGAAAG
130 ACTTTGATTTTATCAAAAATGGTGGAAAG
* * * * * * *
176011 GAAAGCTTTTCTTGC-AACACCAAGGCCTCAATGTCGTGCATCCTAATGAGAAGACTAAGTTTAT
1 AAAAGCTTTTCTTGCGAA-ACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTAT
* *
176075 GGTGCCTAATCC-GAAAAATAATGGGGATTAGTATGAGTATTCATGTTTGTCTCATTTAAGAGAC
65 GGTGCCTAATCCTG-AAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAC
* *
176139 AAACTTTGATTTTATCAAAAACGGTGAAAAG
128 AAACTTTGATTTTATCAAAAATGGTGGAAAG
* * * * * ** *
176170 AAAAG-TTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTATTGA-AGGGACGGTGTTTTT
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGA-AGACTATGTTTAT
* ** * * *
176233 GGCT-CCCAATTTTGAAAAGAATGGAGATT-GTTACGAG-AATCGATGCTTGTCTTATTT-AGAG
65 GG-TGCCTAATCCTGAAAAGAATGG-GATTAG-TATGAGTATTC-ATGTTTGTCTTATTTAAGAG
* ** * * *
176294 -CTGAACTTTGATTTTATGGAATATAAG-GCAAAG
126 AC-AAACTTTGATTTTATCAAAAAT-GGTGGAAAG
* * * * ** * * * * * ** *
176327 AAAAGATTTCCATAC-AAAAGAGAATCATCAATATCATTTCTACTAATGAG--GAATGCGCTTAT
1 AAAAGCTTTTCTTGCGAAACCA-AAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTAT
* * * * ** * * * * ** *
176389 AGTGCCTAATCC-CAAAATGAATGAGGATCATTACT-ACAATCCTTTTTTATCCCATTT--GAGG
65 GGTGCCTAATCCTGAAAA-GAATG-GGATTAGTA-TGAGTATTCATGTTTGTCTTATTTAAGAGA
* * * *
176450 CATGAACTTAGACTTTA-CAAAAATTGGGGGGAA-
127 CA--AACTTTGATTTTATCAAAAA-TGGTGGAAAG
* * * * *
176483 AAAGGATTTTCTTGCGAAACTAAAACATCAATATCATGTATCCTAATGAGAAGACAATGTTTATG
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
* *
176548 GTGCCTAATCCTGAAAAGAGTGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAA
66 GTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* ** *
176613 ACTTTAATTCCATCAAAAACGGTGGAAAG
130 ACTTTGATTTTATCAAAAATGGTGGAAAG
* * * * * * *
176642 GAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGCATCCTAATGAGAATACTAAGTTTATG
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
176707 GTGCCTAATCC-GAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACA
66 GTGCCTAATCCTG-AAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACA
* *
176771 AACTTTGATTTTATCAAAAACGGTGAAAAG
129 AACTTTGATTTTATCAAAAATGGTGGAAAG
* * * * * *
176801 AAAAG-TTTTCTTGCGACACCAAAGTATCAATGTCTTGTATCCTATTGA-AGGGAC-AGTGTTT-
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGA-AGACTA-TGTTTA
* * * * * * * * *
176862 TTGTCTCCCAATCTTGAAAAGAGTGGAGATT-GTTATGAG-AATCGATGCTTGTCTTATTTAGGG
64 TGGT-GCCTAATCCTGAAAAGAATGG-GATTAG-TATGAGTATTC-ATGTTTGTCTTATTTAAGA
** ** *** *
176925 GATGAACTTTGATTTTATGGAAAATAAAGCAAAG
125 GACAAACTTTGATTTTATCAAAAATGGTGGAAAG
* * * ** * * * * * * *
176959 GAAAG-ATTTCTATGCAAAAGAAAATCTTCAATATCATTTATCCTAGTGA-AGAGAATGTGCTTA
1 AAAAGCTTTTCT-TGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGA-AGACTATGTTTA
* * * * * * * *
177022 TAGTGCCAAATCC-CAAAATTAATGACGATTA-T-TGCTAGAATCCATGTTTGTCTAATTTAA-A
64 TGGTGCCTAATCCTGAAAA-GAATG-GGATTAGTATG--AGTATTCATGTTTGTCTTATTTAAGA
* *
177083 G-CATGAACTTAGACTTTA-CAAAAATTGGTGGGAAAG
125 GACA--AACTTTGATTTTATCAAAAA-TGGT-GGAAAG
** * * *** * *
177119 --TTGCCTTTCTTGCGAAACCAAAACATCAATATTGCGTATCCTATTGAGAAGACTACGTTTATG
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
* * * * * * * * *
177182 GTACCTAAACCTAAAAATAATGGGGATTTGTTTGACTATTCATGTTTGTCATATTTAAGAGCCAA
66 GTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* *
177247 ACCTTGATTTTCTATCAAAAACGGTGGAAAG
130 ACTTTGA-TTT-TATCAAAAATGGTGGAAAG
* * * * * * *
177278 AAAAGCTTTTCATGTGACACCAAAGCAACAATGTCAAGTATCTTAATGAAGGAA-A-TATGTTT-
1 AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG-A-GAAGACTATGTTTA
*
177340 TAGGTTCCTAATCCTGAA
64 T-GGTGCCTAATCCTGAA
177358 CTTTGATTAT
Statistics
Matches: 10401, Mismatches: 3279, Indels: 1833
0.67 0.21 0.12
Matches are distributed among these distances:
147 5 0.00
148 43 0.00
149 86 0.01
150 52 0.00
151 33 0.00
152 4 0.00
153 10 0.00
154 48 0.00
155 342 0.03
156 780 0.07
157 1495 0.14
158 3516 0.34
159 3684 0.35
160 228 0.02
161 68 0.01
162 4 0.00
163 3 0.00
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (158 bp):
AAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATG
GTGCCTAATCCTGAAAAGAATGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAA
CTTTGATTTTATCAAAAATGGTGGAAAG
Found at i:163826 original size:474 final size:476
Alignment explanation
Indices: 162773--168182 Score: 2600
Period size: 475 Copynumber: 11.4 Consensus size: 476
162763 AAGCTTTTCT
* * * *** *
162773 TGCGACACCAAAGCATCAATGTCGTGCATCCTAATAAGAAGACTAA-GTTTATGGTGCCTAATCC
1 TGCGAAACCAAAACATCAATATCGCATATCCTAATGAGAAGACTAATGTTTATGGTGCCTAATCC
* * * *
162837 GGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGTCAAACTTTGATTTT
66 TGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
** * * *
162902 ATCAAAAAC-GGCAAAAAGAAAAGTTTTCTTACGACACCAAAGCATCAATGTCTTGTATCATATT
131 ATCAAAAACGGGGGAAAA-AAAAGTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATT
** *
162966 GAAGGGACAGTGTTTTTGGCTCCCAATCTTGAAAACAGTAGAGATTGTTATGAGAATCGATGCTT
195 GAAGGGACAGTGTTTTTGGCTCCCAATCTTGAAAACAGTAGAGATTGTTACAAGAATCGATGCCT
* * *
163031 ATCTTATTTAGGGGATGAACTTTGATTTTATGGAAAATAAAGCAAAGGAAAGATTTCTACGCAAA
260 ATCTTATTTAGGGGATGAACATTGATTTTATGGAAAATAAAGCAAAGGAAAGATATCCACGCAAA
* * * *
163096 AGAAAATCATCAATATCATTTATCCTAGTGAGGAGAATGTGCTTATAGTGCCAAATCACAAAATT
325 AGAAAATCATCAATATCATTTATCCTAATGAAGAGAATATGCTTATAGTGCCAAATCACAAAATG
* * **
163161 AATGACGATTATTACTAGAATCCATGTTTGTCTCATTTAAAGCACGAACTTATACTTTACAAAAA
390 AATGAAGATCATTACTAGAATCCATGTTTAACTCATTTAAAGCACGAACTTATACTTTACAAAAA
*** *
163226 TTGGTGGGAAAGTTGCCTGTCT
455 TTGGTGGGAAAAAGGCCTGTCA
* * * *
163248 TGCGAAACCAAAACATCAATATCGCGTATCCTATTGAGAAGACT-ATGTTTATGGTACCTAAACC
1 TGCGAAACCAAAACATCAATATCGCATATCCTAATGAGAAGACTAATGTTTATGGTGCCTAATCC
* * *
163312 TAAAAATAATGGGGATTAGTATGAGTATTCGTGTTTGTCTTATTTTAA-AGACAAACTTTGATTC
66 TGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTA-TTTAAGAGACAAACTTTGATTC
* *
163376 TATCAAAAACGGGGGAAAAAAAAGTTTTCTTGTTGTCACCAAAGCATCAATGTCATGTATCCTAT
130 TATCAAAAACGGGGGAAAAAAAAGTTTTCTTG-CGACACCAAAGCATCAATGTCATGTATCCTAT
* * * *
163441 TGAAGGGGCAGTGTTTTTGGCTCCCAATCTTGAATAGAGTGGAGATTGTTACAAGAATCGATGCC
194 TGAAGGGACAGTGTTTTTGGCTCCCAATCTTGAAAACAGTAGAGATTGTTACAAGAATCGATGCC
* * * * *
163506 TGTCTTCTTTAGGGGATGAACATTGATTTTATGGAAAATAAGGCTAA-GAAACGATATCCATGCA
259 TATCTTATTTAGGGGATGAACATTGATTTTATGGAAAATAAAGCAAAGGAAA-GATATCCACGCA
* * * * * *
163570 AAAGGAAATCGTCAATATCATTTCTCTTAAT-AAG-GAATATGCTTATAGTGCCTAATTACAAAA
323 AAAGAAAATCATCAATATCATTTATCCTAATGAAGAGAATATGCTTATAGTGCCAAATCACAAAA
* * * * *
163633 TGAATGAAGATCATTGCTGGAATCCATGTTTAACTCATTTGAGGCATGAACTTATACTTTACAAA
388 TGAATGAAGATCATTACTAGAATCCATGTTTAACTCATTTAAAGCACGAACTTATACTTTACAAA
*
163698 AATTGGTGGGAAAAAGGCCTTTCA
453 AATTGGTGGGAAAAAGGCCTGTCA
* * *
163722 TGCGGAACCAAAACTTCAATATTGCATATCCTAATGAGAAGA-TAATGTTTATGGTGCCTAATCC
1 TGCGAAACCAAAACATCAATATCGCATATCCTAATGAGAAGACTAATGTTTATGGTGCCTAATCC
** * * * * *
163786 TGAAAAGGGTGGGGATTAGCATGACTATTCATGCTTGTCTTATTTAAGGGACAAACTTTGATTCC
66 TGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
* ** *
163851 ATCAAAAACGGTGGAAAGGAAAGCTTTTCCTGCGACACCAAAGCATCAATGTCATGTATCCTATT
131 ATCAAAAACGGGGGAAAAAAAAG-TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATT
* * * * * * * * * * ** *
163916 G-A-GTACACTAAGTTTATGG-TGGCTAATCATGAAAAGAATGGGGATTAG-TATGAGTATTC-A
195 GAAGGGACAGT--GTTTTTGGCT-CCCAATCTTGAAAACAGTAGAGATT-GTTACAAG-AATCGA
** * * ** * * * *** * * * * *
163976 TGTTTGTCTTATTTAAGGGACAAACTTTGATTCTAT-CAAACATGGGGGAAAGAAAAG-TTTTCT
255 TGCCTATCTTATTTAGGGGATGAACATTGATTTTATGGAAA-ATAAAGCAAAGGAAAGATATCCA
* * * ** * * ** * * * *** * * * *
164039 TGCGACACCAAAGCATCAATGTCAAGTATCCTATTAAAGGGACGGTGTTTTCTACT-CCCAATCT
319 CGCAAAAGAAAATCATCAATATCATTTATCCTAATGAAGAGAATATG-CTTATAGTGCCAAATC-
** ** ** ** ** * ** *** * *
164103 TGAAAA-GAATGGAA-ATTGTTA-TGAGAATTGATACTTGTCTTATTTAGGGGTTGAAAGTT-GA
382 ACAAAATGAAT-GAAGATCATTACT-AGAATCCATGTTTAACTCATTTAAAGCACG-AACTTATA
** * * **
164164 -TTTA-ATGGAAAATAAG-GCGAAGAAGAGAAT-TCCA
444 CTTTACA---AAAATTGGTGGGAAAAAG-GCCTGT-CA
** *** * * * * * *
164198 TGC-AAAAGAAAATCATCAATATCATTTCTCCTAATGAG--GAAT-GTGCTTATAGTTCCTAATC
1 TGCGAAACCAAAA-CATCAATATCGCATATCCTAATGAGAAGACTAATGTTTATGGTGCCTAATC
* ** * * * * ** * *
164259 AC--AAAATTAATGAAGATCATTACT-AGAATCCATGTTTGTCCCATTT--GAGGCATGAACTTA
65 -CTGAAAA-GAATGGGGATTAGTA-TGAGTATTCATGTTTGTCTTATTTAAGAGACA--AACTTT
* * * * * *
164319 GACTT-TA-CAAAAATTGGTGGG--AAAAATGCTTTTCTTGCGA-AACAAAACATCAATATCGTG
125 GA-TTCTATCAAAAA-CGG-GGGAAAAAAAAG-TTTTCTTGCGACACCAAAGCATCAATGTCATG
* * * * * * * * * *
164379 TATCCTAATG-AGAAGACTAAGT-TTATT-G-TGCCTAATCCTGGAAAGAATAGGGATTAG-TAT
186 TATCCTATTGAAG-GGAC--AGTGTTTTTGGCT-CCCAATCTTGAAAACAGTAGAGATT-GTTAC
* * *** * * * ** ** * * ** **** * **
164439 GAGTACTC-ATATTTGTCTTATATAAGACACAAACTTTGATTCTATAAAAAACGGGGGAAACAAA
246 AAG-AATCGATGCCTATCTTATTTAGGGGATGAACATTGATTTTATGGAAAATAAAGCAAAGGAA
* * ** * * ** * * * * * * * * *
164503 AG-TTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAATG-AGAAGACTAAGTTTGTGGT
310 AGATATCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAAG-AGAATATGCTTATAGT
* * ** * * * ** *
164566 GCCTAATC-CGAAAAAGAATGGGGATTAGTT--TGAGTATTCATGTTTGTCTTATTTAAGAGGCA
374 GCCAAATCAC-AAAATGAATGAAGATCA-TTACT-AGAATCCATGTTTAACTCATTTAA-A-GCA
* * * ** * * * *
164628 --AACTT-TGATTTTATCAAAAA-CGGCGACAAGAAATG-TTTTCT
434 CGAACTTAT-ACTTTA-CAAAAATTGGTGGGAA-AAAGGCCTGTCA
** * *** * * * ** * * *
164669 TGC-AACACCAAAGTATCAATGTCTTGTATCTTATTGA-AGGGA-TGGTGTTT-TTGTCTCCCAA
1 TGCGAA-ACCAAAACATCAATATCGCATATCCTAATGAGA-AGACTAATGTTTATGGT-GCCTAA
* * ** * ** * * **
164730 TCTTGAAAACAATGTAGATT-GTTATGAG-AATCGATGCCTGTCTTATTTAGGGGATGAACTTTG
63 TCCTGAAAAGAATGGGGATTAG-TATGAGTATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTG
* ** **** * ** * * * ** * * * *
164793 ATTTTATTGAAAATAAAGCAAAGGAAAGATTTCTATGCAAAAGAAAATCGTCAATATCATTTATC
126 ATTCTATCAAAAACGGGGGAAAAAAAAGTTTTCT-TGCGACACCAAAGCATCAATGTCATGTATC
* * * * ** * * * *
164858 CTAGTG-AGGAGA-ATGTGCTTATAGC-CCCAAATC-ACAAAATTAAT-GACGATTATTACTAGA
190 CTATTGAAGG-GACA-GTGTTTTTGGCTCCC-AATCTTGAAAA-CAGTAGA-GATTGTTACAAGA
* ** * ** * ** * * ** ***
164918 ATCCATGTTTATCTCATTTAAAGCACAAAC-TTAGACTTTA--CAAAA-ATTG-GTGGGAAAG-T
250 ATCGATGCCTATCTTATTTAGGGGATGAACATT-GATTTTATGGAAAATAAAGCAAAGGAAAGAT
* ** * * * * *
164977 -TGCCTTTCTTGCGAAATCAAAA-CATCAATATCATGTATCCTATTG-AGAAGACTATGTTTATG
314 AT-CC--AC--GC-AAAAGAAAATCATCAATATCATTTATCCTAATGAAG-AGAATATGCTTATA
* * ** * * ** *
165039 GTACCTAAACCTA-AAAAT-AATGGGGAT--TT-GTATGACTACTCATGTTTGTCTTATTTAAGA
372 GTGCC-AAATC-ACAAAATGAATGAAGATCATTACTA-GAAT-C-CATGTTTAACTCATTTAA-A
* * ** * * * * *
165099 GCA--AGCTT-TGA-TTCCATCAAAAACAGG-GGAAAGAAAAGCTTTTCT
431 GCACGAACTTAT-ACTT-TA-CAAAAATTGGTGGGAA-AAAGGCCTGTCA
* * * **** * * * * * **
165144 TGCGACACCAAAGCATCAATGTTATGTATCCTATTGATG-GGAAT-GTGCTTT-TGGTACCCCAT
1 TGCGAAACCAAAACATCAATATCGCATATCCTAATGA-GAAGACTAATG-TTTATGGTGCCTAAT
* * * * * * * * **
165206 CTTGGAAAGAATGGAGATT-GTTGTGAG-AATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGA
64 CCTGAAAAGAATGGGGATTAG-TATGAGTATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGA
* *** ** * * * ** * * * ** * * * * *
165269 TTTTAAGGAAAATAGAGCAAAGAAAAGATTTTGATACAAAAGAAAATCGTCAATATCATTTCTCC
127 TTCTATCAAAAACGGGGGAAAAAAAAG-TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCC
* * * * * ** * * ** *
165334 TAATG-AGGAGA-ATGTGCTTATAG-TGCCTAATC-CCAAAA-TGAATGAAGATCATTACTAGAA
191 TATTGAAGG-GACA-GTGTTTTTGGCT-CCCAATCTTGAAAACAGTA-G-AGATTGTTACAAGAA
* ** * ** * * ** *** *
165394 TCCATGTTTGTCCCATTT-GAGGCATGAAC-TTAGACTTTA-CAAAAATTGGGGGAAA--AAAGG
251 TCGATGCCTATCTTATTTAG-GGGATGAACATT-GATTTTATGGAAAA-TAAAGCAAAGGAAA-G
* * * ** ** * * * *
165454 CTTTTCTTGCGAAACTAAAA-CATCAATATCGTGTATCCTAATG-AGAAGACA-ATGTTTATGGT
312 ATATCCACGC-AAAAGAAAATCATCAATATCATTTATCCTAATGAAG-AGA-ATATGCTTATAGT
* ** * * * * ** *
165516 GCCGAATC-CTGAAAA-GAATGGGGATTAGTA-T-GACTTTGCATGTTTGTCTTATTTAAGAG-A
374 GCCAAATCAC--AAAATGAATGAAGATCATTACTAGA--ATCCATGTTTAACTCATTTAA-AGCA
* * * * * * * *
165576 CAAACTT-TAATTCCATCAAAAA-TAGT-GGAAAGGAAAGCTTTTCT
434 CGAACTTATACTT-TA-CAAAAATTGGTGGGAAA--AAGGCCTGTCA
* * *** * *
165620 TGC-AACACCAAAGCATCAATGTCGTGCATCCTAATAAGAAGACTAA-GTTTATGTTGCCTAATC
1 TGCGAA-ACCAAAACATCAATATCGCATATCCTAATGAGAAGACTAATGTTTATGGTGCCTAATC
* * *
165683 CGGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAATAGACAAACTTTGATTT
65 CTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
** *
165748 TATCAAAAAC-GACGAAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAT
130 TATCAAAAACGGGGGAAAA-AAAAGTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAT
* * * * *
165812 TGAAGGGACAGTGTTTTTGGCTCCCAATATTGAAAACAATGGAGATTGTTACGAGAATCGATGCT
194 TGAAGGGACAGTGTTTTTGGCTCCCAATCTTGAAAACAGTAGAGATTGTTACAAGAATCGATGCC
* * * * * * *
165877 TGTCTTATTTAGAGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGGAAAGATTTCTATGCAA
259 TATCTTATTTAGGGGATGAACATTGATTTTATGGAAAATAAAGCAAAGGAAAGATATCCACGCAA
* * * *
165942 AAGAAAATCATCAATATCATTTATCCTAGTGAGGAGAATGTGCTTATAATGCCAAATCACAAAAT
324 AAGAAAATCATCAATATCATTTATCCTAATGAAGAGAATATGCTTATAGTGCCAAATCACAAAAT
* * ** *
166007 TAATGACA-ATTATTACTAGAATCCATGTTTGTCTCATTTAAAGCACGAACTTAGACTTTACAAA
389 GAATGA-AGATCATTACTAGAATCCATGTTTAACTCATTTAAAGCACGAACTTATACTTTACAAA
*** * *
166071 AATTGGTGGGAAAGTTGCCTTTCT
453 AATTGGTGGGAAAAAGGCCTGTCA
* * * * *
166095 TGCGAAACCAAAACATCAATATCGCGTATCCTATTGAGAAGACT-ACGTTTATGGTACCTAAACC
1 TGCGAAACCAAAACATCAATATCGCATATCCTAATGAGAAGACTAATGTTTATGGTGCCTAATCC
* * * * * * *
166159 TAAAAATAATGGGGATTTGTATGACTATTCATGTTTGTCATATTTAAGAGCCAAACCTTGATTCT
66 TGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
* * * * * * * * *
166224 CTCAAAAACGGTGGAAAGAAAAGCTTTTCATGCGACACCAGATCATCAATGTCAAGTATCTTAAT
131 ATCAAAAACGGGGGAAAAAAAAG-TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATT
* * * * * * * * * ** **
166289 GAA-GGAAATATGTTTTAGGTTCCTAATCCTGAAAA-TGATGGTGACCGCAACAAGAATCGATGC
195 GAAGGGACA-GTGTTTTTGGCTCCCAATCTTGAAAACAG-TAGAGATTGTTACAAGAATCGATGC
* * * * * * *
166352 GCT-TCTTATTTAAGGGATGAACTTTGATTATAAGGAAAAT-AGGTCAAAGAAAAGATTTCCACG
258 -CTATCTTATTTAGGGGATGAACATTGATTTTATGGAAAATAAAG-CAAAGGAAAGATATCCACG
* * * *
166415 TAAAAGAAAATCATCAATATCATTTATCCTAGA-GAGGAGAATCTGCTTATAGCGCCAAATCACA
321 CAAAAGAAAATCATCAATATCATTTATCCTA-ATGAAGAGAATATGCTTATAGTGCCAAATCACA
* * * * ** * * **
166479 AAATTAATGACGATCATTACTAGAAACCATATTTGTCTCATTTAAGGCACGGACTTAGGCTTTAC
385 AAATGAATGAAGATCATTACTAGAATCCATGTTTAACTCATTTAAAGCACGAACTTATACTTTAC
** * *
166544 AAAAATTGGTGGGAAAATTGCCTTTCT
450 AAAAATTGGTGGGAAAAAGGCCTGTCA
* * * *
166571 TGCGAAACCAAAGCATCAATATCGCGTATCCTAATCAGAGGACT-ATGTTTATGGTGCCTAATCC
1 TGCGAAACCAAAACATCAATATCGCATATCCTAATGAGAAGACTAATGTTTATGGTGCCTAATCC
* *
166635 TGAAAAGAATGGGGA-TATGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAGCTTTGATTC
66 TGAAAAGAATGGGGATTA-GTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
* * * *
166699 CATCAAAAACGGGGGAAAGAAAAGCATTTCTTGCGACACCAAAGCATCAATGTTATGTATCCTAT
130 TATCAAAAACGGGGGAAAAAAAAG-TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAT
*** * * * * * * *
166764 TGATTAGA-ATGTGCTTTTGG-TACCCAATCTTGGAAAGAATGGAGATTGTTGCGAGAATCGATG
194 TGAAGGGACA-GTGTTTTTGGCT-CCCAATCTTGAAAACAGTAGAGATTGTTACAAGAATCGATG
* * * * * * * * * ** **
166827 CTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGAGCAAAGAAAAGATTTTGATAC
257 CCTATCTTATTTAGGGGATGAACATTGATTTTATGGAAAATAAAGCAAAGGAAAGATATCCACGC
* * * * * * * *
166892 AAAAGAAAGTCATTAATATCATTTCTCCTAATGAGGAGAATGTGCTTACAGTGCCTATTCACAAA
322 AAAAGAAAATCATCAATATCATTTATCCTAATGAAGAGAATATGCTTATAGTGCCAAATCACAAA
* * * * * *
166957 ATGAATGAAGATCATTACTAGAATCTATGTTTATCTCATTTGAGGCATGAACTTAGACTTTGA-A
387 ATGAATGAAGATCATTACTAGAATCCATGTTTAACTCATTTAAAGCACGAACTTATACTTT-ACA
* * * *
167021 AAAATTGGTGGG-AAAATGCTTTTCT
451 AAAATTGGTGGGAAAAAGGCCTGTCA
* *
167046 TGCGAAACCAAAACATCAATATCCCGTATCCTAATGAGAAGACTAA-GTTTATGGTGCCTAATCC
1 TGCGAAACCAAAACATCAATATCGCATATCCTAATGAGAAGACTAATGTTTATGGTGCCTAATCC
* * *
167110 TAAAAATAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTTAGAGACAAACTTTGATTCT
66 TGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
* *
167175 ATCAAAAACGGGGGAAAGAAAAGTTTTCTTGCTGTCACCAAAGCATCAATGTCATGTATCCTATT
131 ATCAAAAACGGGGGAAAAAAAAGTTTTCTTGC-GACACCAAAGCATCAATGTCATGTATCCTATT
* * * * * ** *
167240 GAAGGGGCAGTGTTTTTGGCTCCCAATCTTGAATAGAGTGGAGATTGTTGCGCGAATCGATGCCC
195 GAAGGGACAGTGTTTTTGGCTCCCAATCTTGAAAACAGTAGAGATTGTTACAAGAATCGATGCCT
* * * * * *
167305 GTTTTCTTTAGGGGATGAACATTGATTTAATGGAAAATAAGGCAAA-GAAACGATATCCATGCAA
260 ATCTTATTTAGGGGATGAACATTGATTTTATGGAAAATAAAGCAAAGGAAA-GATATCCACGCAA
* ** * *
167369 AAGAAAATCATCAATATCATTTCTCCTCCTG-AG-GAATGTGCTTTATAGTGCCTAATCACAAAA
324 AAGAAAATCATCAATATCATTTATCCTAATGAAGAGAATATGC-TTATAGTGCCAAATCACAAAA
** * * * * *
167432 TGAATGAAGATCATTACTAGAATCCATGTTTGTCCCATTTGAGGCACGAACTCAGACTTTACAAA
388 TGAATGAAGATCATTACTAGAATCCATGTTTAACTCATTTAAAGCACGAACTTATACTTTACAAA
** * * *
167497 AATTGGTGGGAAAATTGCTTTTCT
453 AATTGGTGGGAAAAAGGCCTGTCA
* * * *
167521 TGCGAAA-CAAAATATCAATATCGCATATCCTAATGACAAGACTAA-GTTTATTGTGCCTAATCT
1 TGCGAAACCAAAACATCAATATCGCATATCCTAATGAGAAGACTAATGTTTATGGTGCCTAATCC
* * *
167584 TGAAAAGAATAGGG-TTAGTATGAGTATTCATATTTGTCTTATATAAGAGACAAACTTTGATTCT
66 TGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
* * *
167648 ATAAAAAACGGGGGAAAGAAAAGTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTATTG
131 ATCAAAAACGGGGGAAAAAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTG
* * * * * * * * *
167713 AAGGGACGGTGTTTTTGGCTCCCAGTCTTGAAAAGAATGGAGATTGGTACGAGAATCGATGCTTG
196 AAGGGACAGTGTTTTTGGCTCCCAATCTTGAAAACAGTAGAGATTGTTACAAGAATCGATGCCTA
* * * * * *
167778 TCTTATTTA-GGGCTGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAA
261 TCTTATTTAGGGGATGAACATTGATTTTATGGAAAATAAAGCAAAGGAAAGATATCCACGCAAAA
* ** *
167842 GAAAATCATCAATATCATTTCTCCTAATG-AG-GAATGCGCTTATAGTGCCAAATCCCAAAATGA
326 GAAAATCATCAATATCATTTATCCTAATGAAGAGAATATGCTTATAGTGCCAAATCACAAAATGA
** * * ** *
167905 ATGAAGATCATTACTAGAATCCATGTTTGTCCCATTT-GAGTCATAAACTTAGACTTTACAAAAA
391 ATGAAGATCATTACTAGAATCCATGTTTAACTCATTTAAAG-CACGAACTTATACTTTACAAAAA
** * * * *
167969 TTGACGAGAAAAAGGCTTTTCT
455 TTGGTGGGAAAAAGGCCTGTCA
* *** *
167991 TGCGAAACTAAAACATCAATATCATGTATCCTAACGAGAAGAC-AATGTTTATGGTGCCTAATCC
1 TGCGAAACCAAAACATCAATATCGCATATCCTAATGAGAAGACTAATGTTTATGGTGCCTAATCC
* * *
168055 TAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCC
66 TGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
* ** * *
168120 ATCAAAAACGGTGGAAAGGAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGCATCCTA
131 ATCAAAAACGGGGGAAAAAAAAG-TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTA
168183 ATAAGAAGAC
Statistics
Matches: 3960, Mismatches: 775, Indels: 402
0.77 0.15 0.08
Matches are distributed among these distances:
469 1 0.00
470 106 0.03
471 185 0.05
472 385 0.10
473 263 0.07
474 605 0.15
475 1243 0.31
476 1135 0.29
477 30 0.01
478 4 0.00
479 2 0.00
480 1 0.00
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (476 bp):
TGCGAAACCAAAACATCAATATCGCATATCCTAATGAGAAGACTAATGTTTATGGTGCCTAATCC
TGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
ATCAAAAACGGGGGAAAAAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTG
AAGGGACAGTGTTTTTGGCTCCCAATCTTGAAAACAGTAGAGATTGTTACAAGAATCGATGCCTA
TCTTATTTAGGGGATGAACATTGATTTTATGGAAAATAAAGCAAAGGAAAGATATCCACGCAAAA
GAAAATCATCAATATCATTTATCCTAATGAAGAGAATATGCTTATAGTGCCAAATCACAAAATGA
ATGAAGATCATTACTAGAATCCATGTTTAACTCATTTAAAGCACGAACTTATACTTTACAAAAAT
TGGTGGGAAAAAGGCCTGTCA
Found at i:164553 original size:158 final size:158
Alignment explanation
Indices: 164348--164698 Score: 474
Period size: 158 Copynumber: 2.2 Consensus size: 158
164338 GGAAAAATGC
* * * *
164348 TTTTCTTGCGA-AACAAAACATCAATATCGTGTATCCTAATGAGAAGACTAAGTTTATTGTGCCT
1 TTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAATGAGAAGACTAAGTTTATGGTGCCT
*
164412 AATCCTG-GAAAGAATAGGGATTAGTATGAGTACTCATATTTGTCTTATATAAGACACAAACTTT
66 AATCC-GAAAAAGAATAGGGATTAGTATGAGTACTCATATTTGTCTTATATAAGACACAAACTTT
*
164476 GATTCTATAAAAAACGGGGGA-AACAAAAG
130 GATTCTATAAAAAAC-GGCGACAACAAAAG
*
164505 TTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAATGAGAAGACTAAGTTTGTGGTGCCT
1 TTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAATGAGAAGACTAAGTTTATGGTGCCT
* * * * * **
164570 AATCCGAAAAAGAATGGGGATTAGTTTGAGTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTG
66 AATCCGAAAAAGAATAGGGATTAGTATGAGTACTCATATTTGTCTTATATAAGACACAAACTTTG
* * * *
164635 ATTTTATCAAAAACGGCGACAAGAAATG
131 ATTCTATAAAAAACGGCGACAACAAAAG
* * *
164663 TTTTCTTGCAACACCAAAGTATCAATGTCTTGTATC
1 TTTTCTTGCGACACCAAAGCATCAATGTCGTGTATC
164699 TTATTGAAGG
Statistics
Matches: 170, Mismatches: 21, Indels: 5
0.87 0.11 0.03
Matches are distributed among these distances:
157 16 0.09
158 154 0.91
ACGTcount: A:0.34, C:0.15, G:0.19, T:0.32
Consensus pattern (158 bp):
TTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTAATGAGAAGACTAAGTTTATGGTGCCT
AATCCGAAAAAGAATAGGGATTAGTATGAGTACTCATATTTGTCTTATATAAGACACAAACTTTG
ATTCTATAAAAAACGGCGACAACAAAAG
Found at i:165898 original size:475 final size:471
Alignment explanation
Indices: 165385--180111 Score: 2604
Period size: 472 Copynumber: 30.9 Consensus size: 471
165375 ATGAAGATCA
* * * ** * * * *
165385 TTACTAGAATCCATGTTTGTCCCATTT-GAGGCATGAACTTAGACTTTACAAAAATTGGGGGAAA
1 TTACGAGAATCGATGCTTGTCTTATTTAGAGG-ATGAACTTTGATTTTACAAAAA-TAGGGCAAA
* ** * *
165449 -AAAGGCTTTTCTTGCGAAACTAAAACATCAATATCGTGTATCCTAATGAGAAGACAATGTTTAT
64 GAAAAG-TTTTCTTGCGAAAAGAAAACATCAATATCATTTATCCTAATGAGAAGA-AATGTTTAT
* * ** * * * *
165513 GGTGCCGAATCCTGAAAA-GAATGGGGATTAGTA-T-GACTTTGCATGTTTGTCTTATTTAAGAG
127 AGTGCCTAATCC--AAAATGAATGAAGATTATTACTAGA--ATCCATGTTTGTCTCATTTAAGAG
* * *
165575 ACAAACTTTAATTCCATCAAAAA-TAGTGGAAAGGAAAGCTTTTCTTGC-AACACCAAAGCATCA
188 ACAAACTTTAATT-TA-CAAAAATTGGTGGAAA-GAAAGCTTTTCTTGCGAA-ACCAAAACATCA
* * * * *
165638 ATGTCGTGCATCCTAATAAGAAGACTAAGTTTATGTTGCCTAATCCGGAAAAGAATGGGGATTAG
249 ATATCGTGTATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAG
* * ** *
165703 TATGAGTATTCATGTTTGTCTTATTTAATAGACAAACTTTGATTTTATCAAAAACGACGAAAAGA
314 TATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGGGGAAAGA
*
165768 AAAG-TTTTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTATTGAAGGGACAGTGTTTTTGG
379 AAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGACAGTGTTTTTGG
* *
165832 CTCCCAATATTGAAAACAATGGAGATTG
444 CTCCCAATCTTGAAAAGAATGGAGATTG
** *
165860 TTACGAGAATCGATGCTTGTCTTATTTAGAGGATGAACTTTGATTTTATGGAAAATAAGGCAAAG
1 TTACGAGAATCGATGCTTGTCTTATTTAGAGGATGAACTTTGATTTTA-CAAAAATAGGGCAAAG
* * * *
165925 GAAAGATTTCTATGC-AAAAGAAAATCATCAATATCATTTATCCTAGTGAGGAG-AATGTGCTTA
65 AAAAGTTTTCT-TGCGAAAAGAAAA-CATCAATATCATTTATCCTAATGAGAAGAAATGT--TTA
* * *
165988 TAATGCCAAATCACAAAATTAATGACA-ATTATTACTAGAATCCATGTTTGTCTCATTTAA-AGC
126 TAGTGCCTAATC-CAAAATGAATGA-AGATTATTACTAGAATCCATGTTTGTCTCATTTAAGAG-
* ** *
166051 ACGAAC-TTAGACTTTACAAAAATTGGTGGGAAAG-TTGCCTTTCTTGCGAAACCAAAACATCAA
188 ACAAACTTTA-A-TTTACAAAAATTGGT-GGAAAGAAAGCTTTTCTTGCGAAACCAAAACATCAA
* * * * * * * *
166114 TATCGCGTATCCTATTGAGAAGACTACGTTTATGGTACCTAAACCTAAAAATAATGGGGATTTGT
250 TATCGTGTATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGT
* * * * * *
166179 ATGACTATTCATGTTTGTCATATTTAAGAGCCAAACCTTGATTCTCTCAAAAACGGTGGAAAGAA
315 ATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGGGGAAAGAA
* * * * * * * * *
166244 AAGCTTTTCATGCGACACCAGATCATCAATGTCAAGTATCTTAATGAA-GGAAATATGTTTTAGG
380 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGACA-GTGTTTTTGG
* * * * **
166308 TTCCTAATCCTGAAAATG-ATGGTGACCG
444 CTCCCAATCTTGAAAA-GAATGGAGATTG
** * * * *
166336 CAACAAGAATCGATGCGCT-TCTTATTTA-AGGGATGAACTTTGATTATA-AGGAAAATAGGTCA
1 TTACGAGAATCGATGC-TTGTCTTATTTAGA-GGATGAACTTTGATTTTACA--AAAATAGGGCA
* ** * * *
166398 AAGAAAAGATTTC-CACGTAAAAGAAAATCATCAATATCATTTATCCTAGA-GAGGAGAATCTGC
62 AAGAAAAGTTTTCTTGCG-AAAAGAAAA-CATCAATATCATTTATCCTA-ATGAGAAGAA-ATGT
* * * * * * *
166461 TTATAGCGCCAAATCACAAAATTAATGACGATCATTACTAGAAACCATATTTGTCTCATTTAAG-
123 TTATAGTGCCTAATC-CAAAATGAATGAAGATTATTACTAGAATCCATGTTTGTCTCATTTAAGA
** * ** * *
166525 GCACGGAC-TTAGGCTTTACAAAAATTGGTGGGAAA-ATTGCCTTTCTTGCGAAACCAAAGCATC
187 G-ACAAACTTTA--ATTTACAAAAATTGGT-GGAAAGAAAGCTTTTCTTGCGAAACCAAAACATC
* * * *
166588 AATATCGCGTATCCTAATCAGAGGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGA-TA
248 AATATCGTGTATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTA
* * *
166652 TGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAGCTTTGATTCCATCAAAAACGGGGGAAA
313 -GTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGGGGAAA
* * *** *
166717 GAAAAGCATTTCTTGCGACACCAAAGCATCAATGTTATGTATCCTATTGATTAGA-ATGTGCTTT
377 GAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGACA-GTGTTTT
*
166781 TGG-TACCCAATCTTGGAAAGAATGGAGATTG
441 TGGCT-CCCAATCTTGAAAAGAATGGAGATTG
* * *
166812 TTGCGAGAATCGATGCTTGTCTTTTTTA-AGGGATGAACTTTGATTTTA-AGGAAAATAGAGCAA
1 TTACGAGAATCGATGCTTGTCTTATTTAGA-GGATGAACTTTGATTTTACA--AAAATAGGGCAA
** * * * * *
166875 AGAAAAGATTTTGATAC-AAAAGAAAGTCATTAATATCATTTCTCCTAATGAGGAG-AATGTGCT
63 AGAAAAG-TTTTCTTGCGAAAAGAAA-ACATCAATATCATTTATCCTAATGAGAAGAAATGT--T
* * * * *
166938 TACAGTGCCTATTCACAAAATGAATGAAGATCATTACTAGAATCTATGTTTATCTCATTT--GAG
124 TATAGTGCCTAATC-CAAAATGAATGAAGATTATTACTAGAATCCATGTTTGTCTCATTTAAGAG
* * *
167001 GCATGAAC-TTAGACTTTGA-AAAAATTGGTGGGAA-AATGCTTTTCTTGCGAAACCAAAACATC
188 ACA--AACTTTA-A-TTT-ACAAAAATTGGTGGAAAGAAAGCTTTTCTTGCGAAACCAAAACATC
** * *
167063 AATATCCCGTATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAATAATGGGGATTA
248 AATATCGTGTATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTA
*
167128 GTATGAGTATTCATGTTTGTCTTATTTTAGAGACAAACTTTGATTCTATCAAAAACGGGGGAAAG
313 GTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGGGGAAAG
* *
167193 AAAAG-TTTTCTTGCTGTCACCAAAGCATCAATGTCATGTATCCTATTGAAGGGGCAGTGTTTTT
378 AAAAGCTTTTCTTGC-GACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGACAGTGTTTTT
* *
167257 GGCTCCCAATCTTGAATAGAGTGGAGATTG
442 GGCTCCCAATCTTGAAAAGAATGGAGATTG
* * ** * * * * * ** *
167287 TTGCGCGAATCGATGCCCGTTTTCTTTAGGGGATGAACATTGATTTAATGGAAAATAAGGCAAAG
1 TTACGAGAATCGATGCTTGTCTTATTTAGAGGATGAACTTTGATTTTA-CAAAAATAGGGCAAAG
* * * * * ** *
167352 AAACGATATCCATGC-AAAAGAAAATCATCAATATCATTTCTCCTCCTGAG--GAATGTGCTTTA
65 AAAAG-TTTTCTTGCGAAAAGAAAA-CATCAATATCATTTATCCTAATGAGAAGAA-ATG-TTTA
* * *
167414 TAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCCCATTTGAG-GCA
126 TAGTGCCTAATC-CAAAATGAATGAAGATTATTACTAGAATCCATGTTTGTCTCATTTAAGAG-A
* * ** *
167478 CGAAC-TCAGACTTTACAAAAATTGGTGGGAAA-ATTGCTTTTCTTGCGAAA-CAAAATATCAAT
189 CAAACTTTA-A-TTTACAAAAATTGGT-GGAAAGAAAGCTTTTCTTGCGAAACCAAAACATCAAT
** * * * *
167540 ATCGCATATCCTAATGACAAGACTAAGTTTATTGTGCCTAATCTTGAAAAGAATAGGG-TTAGTA
251 ATCGTGTATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTA
* * *
167604 TGAGTATTCATATTTGTCTTATATAAGAGACAAACTTTGATTCTATAAAAAACGGGGGAAAGAAA
316 TGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGGGGAAAGAAA
* *
167669 AG-TTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGACGGTGTTTTTGGCT
381 AGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGACAGTGTTTTTGGCT
*
167733 CCCAGTCTTGAAAAGAATGGAGATTG
446 CCCAATCTTGAAAAGAATGGAGATTG
* * ** *
167759 GTACGAGAATCGATGCTTGTCTTATTTAG-GGCTGAACTTTGATTTTATGGAAAATAAGGCAAAG
1 TTACGAGAATCGATGCTTGTCTTATTTAGAGGATGAACTTTGATTTTA-CAAAAATAGGGCAAAG
* * * *
167823 AAAAGATTTCCATGC-AAAAGAAAATCATCAATATCATTTCTCCTAATGAG--G-AATGCGCTTA
65 AAAAG-TTTTCTTGCGAAAAGAAAA-CATCAATATCATTTATCCTAATGAGAAGAAAT--GTTTA
* * * * ** *
167884 TAGTGCCAAATCCCAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCCCATTTGAGTCAT
126 TAGTGCCTAAT-CCAAAATGAATGAAGATTATTACTAGAATCCATGTTTGTCTCATTTAAGAGAC
** * *
167949 AAAC-TTAGACTTTACAAAAATTGACGAGAAA-AAGGCTTTTCTTGCGAAACTAAAACATCAATA
190 AAACTTTA-A-TTTACAAAAATTGGTG-GAAAGAAAGCTTTTCTTGCGAAACCAAAACATCAATA
* * *
168012 TCATGTATCCTAACGAGAAGAC-AATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTA
252 TCGTGTATCCTAATGAGAAGACTAA-GTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTA
* * * *
168076 TGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGGAA
316 TGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGGGGAAAGAAA
* * * * * *
168141 AGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGCATCCTAAT-AAGAAGACTA-AGTTTAT-G
381 AGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAG-GGAC-AGTGTTTTTGG
* * *** *
168203 ATGCCTAATCCAAAAAAGAATGGGGATTAG
444 CT-CCCAATCTTGAAAAGAATGGAGATT-G
* * * * ** * *
168233 -TATGAGTATTC-ATGTTTGTCTCATTTA-AGAGACAAACTTTGATTTTATCAAAAA-CGGCGAA
1 TTACGAG-AATCGATGCTTGTCTTATTTAGAG-GATGAACTTTGATTTTA-CAAAAATAGG-GCA
* * ** * * * * **
168294 AAGAAAAGTTTTCTTGTGACACCAAAGCATCAATGTC-TTGTATCCTATTGA-AGGGACGGTGTT
62 AAGAAAAGTTTTCTTGCGAAAAGAAAACATCAATATCATT-TATCCTAATGAGA-AGA-AATGTT
* * * * * * * * * * * *
168357 TTTGGCT-CCCAATCTTGAAAA-CAATGGAGATTGTTA-TGAGAATCAATGCTTGCCTTATTTAG
124 TATAG-TGCCTAATC--CAAAATGAATGAAGATTATTACT-AGAATCCATGTTTGTCTCATTTAA
* ** * ** ** * * *
168419 GGGATGAACTTTGATTTTATGGAAAATAAG-GCAAAGGAAAG-ATTTCTCTGC-ACAA-GAAAAT
185 GAGACAAACTTT-AATTTA-CAAAAATTGGTGGAAA-GAAAGCTTTTCT-TGCGA-AACCAAAA-
* * * * * ** * * * * *
168480 CATCAATATCATTTATCCTAGTGAGGAGAATGTGCTTATGGCGCCAAATCAC--AAAATTAATGA
244 CATCAATATCGTGTATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATC-CTGAAAA-GAATGG
* * * * * *
168543 TGATTATTACT-AGAATCCATGTTTGTCTCATTTAA-AGCACAAACTTAGACTT-TA-CAAAAAT
307 GGATTAGTA-TGAGTATTCATGTTTGTCTTATTTAAGAG-ACAAACTTTGA-TTCTATCAAAAA-
* ** * * ** ** ** *
168604 TGGTGGGAAAG--TTGCCTTTCTTGCGAAACCAAAATATCAATAACGCGTATCCTATTG-AGAAG
368 CGG-GGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAG-GG
* * * * * * *
168666 ACTA-CGTTTATGG-TACCTACA-CCTAAAAATAATGGGGATT-
431 AC-AGTGTTTTTGGCT-CCCA-ATCTTGAAAAGAATGGAGATTG
* * * ** * * * *
168706 TGTATGACTATTC-ATATTTGTCATATTTAAGAGCCA--AACCTTGATTCTATC--AAATACGGT
1 T-TACGA-GAATCGATGCTTGTCTTATTT-AGAG-GATGAACTTTGATTTTA-CAAAAATA-GG-
* * * ** * * * ** * *
168766 GGAAAGAAAAGCTTTTCATGCGACACCAGAGCATCAATGTCAAGTATCTTAATGA-AGGACATAT
59 GCAAAGAAAAG-TTTTCTTGCGAAAAGAAAACATCAATATCATTTATCCTAATGAGAAGA-A-AT
* ** ***** * * ** *
168830 GTTT-TAGGTTCCTAATCCTGAAAATG-ATGGTGACCGCAACGAGAATCGATGCCCT-TCTTATT
121 GTTTATA-GTGCCTAATCC--AAAATGAATGAAGATTATTACTAGAATCCATG-TTTGTCTCATT
* ** * * * * * * * ** **
168892 TAAGGGATGAACTTCGACTATA-AGGAAAATAGGT-AAAAGAAAAGATTTCCACG-GAAAAGAAA
182 TAAGAGACAAACTT-TAATTTACA--AAAATTGGTGGAAAG-AAAGCTTTTCTTGCGAAACCAAA
* * * * * ** * * * * *
168954 ATCATCAATATCATTTATCCTAGTGAGGAGAATGTGCTTATAGCGCCAAATCAC--AAAATTAAT
243 A-CATCAATATCGTGTATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATC-CTGAAAA-GAAT
** * * * * * * ** * *
169017 GACGATCATTACT-AGAATCCATGTTTATCTCATTTAAG-GCACGGACTTAGGCTT-TA-CAAAA
305 GGGGATTAGTA-TGAGTATTCATGTTTGTCTTATTTAAGAG-ACAAACTT-TGATTCTATCAAAA
* ** * * * * ** * *
169078 ATTGGTGGG-AA-AATTGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAAT-CAGA
367 A-CGG-GGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAG-
* * * * *
169140 GGACTA-TGTTTATGG-TGCCTAATCCTGAAAAGAACGGGGATT-
429 GGAC-AGTGTTTTTGGCT-CCCAATCTTGAAAAGAATGGAGATTG
* * * * * **
169182 TGTATGACTATTC-ATGTTTGTCTTATTTA-AGAGA-CAAGCTTTGATTCCTT-CAAAAACGGGG
1 T-TACGA-GAATCGATGCTTGTCTTATTTAGAG-GATGAA-CTTTGATT--TTACAAAAATAGGG
* * * ** * * * * * *
169243 GAAAGAAAAGCATTTCTTGCGACACCAAAGCATCAATGTTATGTATCCTATTGATG--GGAATGT
60 CAAAGAAAAG-TTTTCTTGCGAAAAGAAAACATCAATATCATTTATCCTAATGA-GAAGAAATGT
* * * ** * * * * * * **
169306 GCTTTTGGTACCTAATCTTGGAAA-GAATGGAGATTGTTGCGAGAATCGATGCTTGTCTTTTTTA
123 --TTATAGTGCCTAATC--CAAAATGAATGAAGATTATTACTAGAATCCATGTTTGTCTCATTTA
* ** * * * * * **** ** *
169370 AGGGATGAACTTTGATTTTA-AGGAAAA-TAGAGCAAAGAAAAGATTTT-GAAAGAAAAGAAAGT
184 AGAGACAAACTTT-AATTTACA--AAAATTGGTGGAAAG-AAAGCTTTTCTTGCGAAACCAAA-A
* * * * ** * ** * ** * *
169432 CATCAGTATCATTTCTCCTAATGAGGTGAATGTGCTTATAATGCCTATTCAC--AAAATGAATGA
244 CATCAATATCGTGTATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATC-CTGAAAA-GAATGG
* * * * * * * *
169495 AGATCATTACT-AG-AATCTATGTTTGTCTCATTT--GAGGCATGAACTTAGACTT-TA-AAAAA
307 GGATTAGTA-TGAGTATTC-ATGTTTGTCTTATTTAAGAGACA--AACTTTGA-TTCTATCAAAA
* * * * * * ** *
169554 ATTGGTGG-AA-AAATGCTTTTCTTGTGAAACCGAAA-CATCAATATCCCGTATCCTAATG-AGA
367 A-CGGGGGAAAGAAAAGCTTTTCTTGCGACACC-AAAGCATCAATGTCATGTATCCTATTGAAG-
* * * * * * *
169615 AGACTA-AGTTTATGG-TGCCTAATCCTAAAAAGAATGGGGATTAG
429 GGAC-AGTGTTTTTGGCT-CCCAATCTTGAAAAGAATGGAGATT-G
* * * * ** * ** *
169659 -TATGAGTATTC-ATGTTTGTCTTATTTTA-AAGACAAACTTTGATTCTATCAAAAACGGGGGAA
1 TTACGAG-AATCGATGCTTGTCTTA-TTTAGAGGATGAACTTTGATTTTA-CAAAAATAGGGCAA
* ** ** * * * * ** * * *
169721 AAAAAAGTTTTCTTGCTGTCACCAAAGCATCAATGTCATATATCCTATTGAAGGGGCAGTGTTTT
63 AGAAAAGTTTTCTTGC-GAAAAGAAAACATCAATATCATTTATCCTAATG-AGAAGAAATGTTTA
* * ** * * * * * ** * *
169786 TGGCT-CCCAATCTTAAATGGAGTGGAGATTGTTACGAGAATCGATGCCTGTCTTC-TTTAGGGG
126 TAG-TGCCTAATCCAAAAT-GAATGAAGATTATTACTAGAATCCATGTTTGTC-TCATTTAAGAG
** * ** * * * * * **
169849 ATGAA-TATTGATTTA-ATGGAAAATAAG-GCAAAGAAACGGTATCCATGC-AAAAGAAAATCAT
188 ACAAACT-TTAATTTACA---AAAATTGGTGGAAAGAAA-GCTTTTCTTGCGAAACCAAAA-CAT
* * * * * * * * * **
169910 CAACATCATTTCTCCTAAAT-ATG--GAATATGCTTATAGTGCCTAAT--TACAAAATGAATGAA
247 CAATATCGTGTATCCT-AATGA-GAAGACTAAGTTTATGGTGCCTAATCCT-GAAAA-GAATGGG
* * * * * * * *
169970 GATCA-T-TGCTGGAATCTATGTTTATCTCATTT--GAGGCATGAACTTCGACTT-TA-CAAAAA
308 GATTAGTATG-AGTATTC-ATGTTTGTCTTATTTAAGAGACA--AACTTTGA-TTCTATCAAAAA
* * * * * * *
170029 TTGGTGGG-AA-AAAGGCCTTTCATGCGGA-ACCAAAACATCAATAT--TGCATATCCTAATG-A
368 -CGG-GGGAAAGAAAAGCTTTTCTTGC-GACACCAAAGCATCAATGTCATG--TATCCTATTGAA
* * * * * ** *
170088 GAAGACAATGTTTGTGG-TGCCTAATCCTGAAAAGGGTGGGGATTAG
428 G-GGACAGTGTTTTTGGCT-CCCAATCTTGAAAAGAATGGAGATT-G
* * ** ** *
170134 -AATGA-ATATTC-ATGCTTGTCTTATTTA-AGGGACAAACTTTGATTCCATCAAAAAT-GGTGG
1 TTACGAGA-A-TCGATGCTTGTCTTATTTAGA-GGATGAACTTTGATTTTA-CAAAAATAGG-GC
* * * * ** * * * * * **
170194 AGAGGAAAGCTTTTCTTCCGACACCAAAGCATCAATGTCGTGTATCCTATTGAGTACACTAA-GT
61 AAAGAAAAG-TTTTCTTGCGAAAAGAAAACATCAATATCATTTATCCTAATGAG-A-AGAAATGT
* ** * * * * * *
170258 TTATGGTGCCTAAT-CATGAAATGAATGGGGATTAGTA-TGGGTATTCATGTTTGTCTTATCTAA
123 TTATAGTGCCTAATCCA--AAATGAATGAAGATTATTACT-AGAATCCATGTTTGTCTCATTTAA
* * ** * * * * * *
170321 GGGACAAACTTTGATTCTATCAATCA-CGGGGGAAAGAAAAG-TTTTCTGGTGACACCAAAGCAT
185 GAGACAAACTTTAATT-TA-CAAAAATTGGTGGAAAG-AAAGCTTTTCTTGCGAAACCAAAACAT
* ** * ** * ** * * *
170384 CAATGTCAAGTATCCT-ATTA-AAGGGA-TGGTGTGTTTTACT-CCCAATCTTGAAAAGAATGGA
247 CAATATCGTGTATCCTAATGAGAA--GACT-AAGT-TTATGGTGCCTAATCCTGAAAAGAATGGG
* * ** * * * ** ** **
170445 AATT-GTTATGAG-AATCGATACTTATCTTATTTAGGGGATGAACTTTGATT-TAATGGAAAATA
308 GATTAG-TATGAGTATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT-ATCAAAAACG
* * * * * * ** * * * * *
170507 AGGCAAAGAAGAGAC-TTCCTTGCAAAAGAAAATCATCAATATCATTTCTCCTAGTG-A-GGA-A
370 GGGGAAAGAAAAG-CTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGACA
* * * * ** * **
170568 TGTGCTTATAG-TGCCTAATC-ACAAAATGAATGAAGATCA
434 -GTGTTTTTGGCT-CCCAATCTTGAAAA-GAATGGAGATTG
* * * * ** ** * * **
170607 TTACTAGAATCCAAGTTTGTCCCATTT-GAGGCATGAACTCAGACTTTACAAAAATTGGCGGGAA
1 TTACGAGAATCGATGCTTGTCTTATTTAGAGG-ATGAACTTTGATTTTACAAAAATAGG-GCAAA
* * **
170671 -AAATGCTTTTTCTTGCG-AAACAAAACATCAATATCACGTATCCTAATGAGAAGACTAA-GTTT
64 GAAAAG--TTTTCTTGCGAAAAGAAAACATCAATATCATTTATCCTAATGAGAAGA--AATGTTT
* * * * * * * * **
170733 ATTGTGCCTAATCTTGAAAA-GAAT-AGGGATTAGTA-TGAGTATTCATATTTGTCTTATACAAG
125 ATAGTGCCTAATC--CAAAATGAATGA-AGATTATTACT-AGAATCCATGTTTGTCTCATTTAAG
* * ** * * * *
170795 AGACAAACTTTGATTCTATAAAAAACGGGGGAAAGAAAAG-TTTTCTTGTGACACCAAAGCATCA
186 AGACAAACTTTAATT-TACAAAAATTGGTGGAAAG-AAAGCTTTTCTTGCGAAACCAAAACATCA
* * * ** * * * * *
170859 ATGTCATGTATCCTATTGAAGAGAGGGT--GTTTTTGGCT-CCCAATCTTGAAAAGAATAGAGAT
249 ATATCGTGTATCCTAATG-AGA-AGACTAAGTTTATGG-TGCCTAATCCTGAAAAGAATGGGGAT
* * * * * * ** ***
170921 TGGTACGAG-AATCGATGCTTGTCTTATTT-AG-GGCTGAACTTTGATT-TAATGGAAAATAAGG
311 TAGTATGAGTATTC-ATGTTTGTCTTATTTAAGAGAC-AAACTTTGATTCT-ATCAAAAACGGGG
* * * * * ** * * * * *
170982 CAAAGAAGAGAC-TTCCTTGCAAAAGAAAATCATCAATATCATTTCTCCTAGTG-A-GGA-ATGT
373 GAAAGAAAAG-CTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGACA-GT
* * * * ** * **
171043 GCTTATAG-TGCCTAATC-ACAAAATGAATGAAGATCA
436 GTTTTTGGCT-CCCAATCTTGAAAA-GAATGGAGATTG
* * * ** * * * * **
171079 TTACTAGAATCCATGTTTGTCCCATTT-GAGTAATAAACTTAGACTTTT-CAAAAATTGGCGGGA
1 TTACGAGAATCGATGCTTGTCTTATTTAGAG-GATGAACTTTGA-TTTTACAAAAATAGG-GCAA
* ** * * *
171142 A-AAAGGCTTTTCTTGCGAAACTAAAACATCAATATCGTGTATCCTAACGAGAAGACAATGTTTA
63 AGAAAAG-TTTTCTTGCGAAAAGAAAACATCAATATCATTTATCCTAATGAGAAGA-AATGTTTA
* * ** ** * *
171206 TGGTGCCTAATCTTGAAAA-GAATGGGGATTAGCA-T-GACTATTCATGTTTGTCTTATTTAAGA
126 TAGTGCCTAATC--CAAAATGAATGAAGATTATTACTAGA--ATCCATGTTTGTCTCATTTAAGA
* * * * *
171268 GACAAACTTTGATTCCATCAAAAA-TGGTGGAAAGGAAAGCTTTTCTTGCGACACTAAAGCATCA
187 GACAAACTTTAATT-TA-CAAAAATTGGTGGAAA-GAAAGCTTTTCTTGCGAAACCAAAACATCA
* * * * * *
171332 ATGTCGTGCATCCTAATAAGAAGACAAAGTTTATGGTGCCTAATCCGGAAAAGAATAGGGATTAG
249 ATATCGTGTATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAG
* * *
171397 TATGAGTATTCATGTTTGTC----TT----GACAAACTTTGATTTTATCAAAAACGGCGAAAAGA
314 TATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGGGGAAAGA
* * *
171454 AAAG-TTTTCTTGCGACACCAAAGCATCAATGTCTTGCATCCTATTGAAGGGACGGTG-TTTTGG
379 AAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGACAGTGTTTTTGG
* *
171517 CTCCCAATCTTGAAAACAATAGAGATTG
444 CTCCCAATCTTGAAAAGAATGGAGATTG
* ** * * ** **
171545 TTATGAGAATTAATGGTTGTCTTATTTAGGGGATGAACTTTGATTTTATGGAAAATAAAGCAAAG
1 TTACGAGAATCGATGCTTGTCTTATTTAGAGGATGAACTTTGATTTTA-CAAAAATAGGGCAAAG
* * * *
171610 GAAAG-TTTC-TACGCAAAAGAAAATCATCAATATCATTTATCCTAGTGA-AGAGAATGTGTTTA
65 AAAAGTTTTCTTGCG-AAAAGAAAA-CATCAATATCATTTATCCTAATGAGA-AGAA-ATGTTTA
* * * * *
171672 TAGTGCCAAATCACAAAATAAATGACGATTATTACTAGAATCCATGCTTGTCTGATTTAA-AGCA
126 TAGTGCCTAATC-CAAAATGAATGAAGATTATTACTAGAATCCATGTTTGTCTCATTTAAGAG-A
* * *** * *
171736 CGAAC-CTAGACTTTACAAAAATTGGTGGGAAA-CTTGCCTGTCTTGCGAAACCAAAACATCAAT
189 CAAACTTTA-A-TTTACAAAAATTGGT-GGAAAGAAAGCTTTTCTTGCGAAACCAAAACATCAAT
* * * * * * *
171799 ATCGCGTATCCTATTGAGAAGACTACGTTTATGGTACCTAAACCTAAAAATAATGGGGATTAGTA
251 ATCGTGTATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTA
171864 TGAGTATTCATGTTTGTCTTATTTTAA-AGACAAACTTTGATTCTATCAAAAACGGGGGAAA-AA
316 TGAGTATTCATGTTTGTCTTA-TTTAAGAGACAAACTTTGATTCTATCAAAAACGGGGGAAAGAA
* *
171927 AAG-TTTTCTTGCTATCACCAAAGCATCAATGTCATGTATCCTATTGAAGGGGCAGTGTTTTTGG
380 AAGCTTTTCTTGCGA-CACCAAAGCATCAATGTCATGTATCCTATTGAAGGGACAGTGTTTTTGG
* *
171991 CTCCCAATCTTGAATAGAGTGGAGATTG
444 CTCCCAATCTTGAAAAGAATGGAGATTG
* * * * * ** * *
172019 TTACAAGAATCGATGCCTGTCTTCTTTAGGGGATGAACATTGATTTTATGGAAAATAAGGCTAAG
1 TTACGAGAATCGATGCTTGTCTTATTTAGAGGATGAACTTTGATTTTA-CAAAAATAGGGCAAAG
* * * * * * * * * *
172084 AAACGATATCCATGC-AAAAGGAAATCGTCAATATCATTTCTCTTAAT-A-AGGAATATGCTTAT
65 AAAAG-TTTTCTTGCGAAAA-GAAAACATCAATATCATTTATCCTAATGAGAAGAA-ATGTTTAT
* * * ** *
172146 AGTGCCTAATTACAAAATGAATGAAGATCATTACTGGAATCCATGTTTAACTCATTT--GAGGCA
127 AGTGCCTAA-TCCAAAATGAATGAAGATTATTACTAGAATCCATGTTTGTCTCATTTAAGAGACA
* * * * * * *
172209 TGAACTTATACTTTACAAAAATTGGTGGGAA-AAAGACCTTTCATGTGGAACCAAAACTTCAATA
191 --AACTT-TAATTTACAAAAATTGGTGGAAAGAAAG-CTTTTCTTGCGAAACCAAAACATCAATA
* ** ** *
172273 TTGCATATCCTAATGAGAAGA-TAATGTTTATGGTGCCTAATCCTGAAAAGGGTGGGGATTAGCA
252 TCGTGTATCCTAATGAGAAGACTAA-GTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTA
* ** * * * *
172337 TGACTATTCATACTTGTCTTATTTAAGGGACAAACTTTGATTCCATCAAAAACGGTGGAAAGGAA
316 TGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGGGGAAAGAAA
* * * * * *
172402 AGCTTTTCCTACAACACCAAAGCATCAATGTCATGTATCCTATTG-A-GTACACTAAGTTTATGG
381 AGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGACAGT--GTTTTTGG
* * *
172465 -TGCCTAATCATGAAAAGAATGGGGATTAG
444 CT-CCCAATCTTGAAAAGAATGGAGATT-G
* * * * ** * * * *
172494 -TATGAGTATTC-ATGTTTGTTTTATTTA-AGGGACAAACTTTGATTCTATCAAACATGGGGGAA
1 TTACGAG-AATCGATGCTTGTCTTATTTAGA-GGATGAACTTTGATTTTA-CAAAAATAGGGCAA
* ** * ** * **
172556 AGAAAAGTTTTCTTGCGACACCAAAGCATCAATATCAGGTATCCT-ATTA-AAGGGATGGTGTTT
63 AGAAAAGTTTTCTTGCGAAAAGAAAACATCAATATCATTTATCCTAATGAGAA--GA-AATG-TT
* * * * * * ** * *
172619 TCTACT-CCCAATCTTGAAAA-GAATGGAA-ATTGTTA-TGAGAATCGATACTTGTCTTATTTAG
124 TATAGTGCCTAATC--CAAAATGAAT-GAAGATTATTACT-AGAATCCATGTTTGTCTCATTTAA
* ** * * ** * * ** * * **
172680 GGGTTGAAA-GTTGATTTAGTGGAAAATAAGG-CG-AAGAAGAGAATTCCATGC-AAAAGAAAAT
185 GAG-ACAAACTTTAATTTA--CAAAAAT-TGGTGGAAAGAA-AGCTTTTCTTGCGAAACCAAAA-
* * * * ** * * *
172741 CATCAATATCATTTCTCCTAATGAG--GAATGTGCTTATAGTGCCTAATCAC--AAAATGAATGA
244 CATCAATATCGTGTATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATC-CTGAAAA-GAATGG
* * * * * ** * *
172802 AGATCATTACT-AGAATCCATGTTTGTCCCATTT--GAGGCATGAACTTAGACTT-TA-CAAAAA
307 GGATTAGTA-TGAGTATTCATGTTTGTCTTATTTAAGAGACA--AACTTTGA-TTCTATCAAAAA
* * * * * * * *
172862 TTGGTGGG-AA-AAATGCTTTTCTTGCGA-AACAAAACATCAATATCGTGTATCCTAATG-AGAA
368 -CGG-GGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAG-G
* * * *
172923 GACTAAGT-TTATT-G-TGCCTAATCCTGGAAAGAATAGG-GATTAG
430 GAC--AGTGTTTTTGGCT-CCCAATCTTGAAAAGAAT-GGAGATT-G
* * ** * ** * ** *
172966 -TATGAGTACTC-ATATTTGTCTTATATA-AGAGACAAACTTTGATTCTATAAAAAAACGGGGGA
1 TTACGAG-AATCGATGCTTGTCTTATTTAGAG-GATGAACTTTGATT-T-TACAAAAATAGGGCA
* **** * * * * * * **
173028 AAGAAAAGTTTTCTTGTGACCCCAAAGCATCATTGTCATGTATCCTATTGA-AGGGATGGTGTTT
62 AAGAAAAGTTTTCTTGCGAAAAGAAAACATCAATATCATTTATCCTAATGAGA-AGA-AATGTTT
* * * * * * * * * * *
173092 TTGGCT-CCCAATCTTGAAAA-GAATGGAGATTGTTACGAGAATCGATGCTTGTCTTACTT-AG-
125 ATAG-TGCCTAATC--CAAAATGAATGAAGATTATTACTAGAATCCATGTTTGTCTCATTTAAGA
* * ** ** * * * * **
173153 GGCTAAACTTTGATTTTATGGAAAATAAG-GCAAAGAAAAGATTTCCATGC-AAAAGAAAATCAT
187 GAC-AAACTTT-AATTTA-CAAAAATTGGTGGAAAG-AAAGCTTTTCTTGCGAAACCAAAA-CAT
* * * * ** * ** * *
173216 CAATATCATTTTTCCTAATGAG--GAATGCGCTTATAATGCCTAATCC-CAAAATGAATGAGGAT
247 CAATATCGTGTATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCCTGAAAA-GAATGGGGAT
* * * * ** * * *
173278 CATTACT-AGAATCCATGTTTGTCCCATTT--GAGGCATGAACTTAGACTT-TA-CAAAAATTGG
311 TAGTA-TGAGTATTCATGTTTGTCTTATTTAAGAGACA--AACTTTGA-TTCTATCAAAAA-CGG
* * * * * * * *
173338 GGG---GAAAAGGATTTTCTTGCGAAACTAAAACATCAATATCGTGTATCCTAATG-AGAAGACA
371 GGGAAAGAAAA-GCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAG-GGACA
* * * * *
173399 ATGTTTATGG-TGCCTAATCCTGAAAAGAATGGGGATTAG
434 GTGTTTTTGGCT-CCCAATCTTGAAAAGAATGGAGATT-G
* * * * ** * * *
173438 -TATGACTATTC-ATGTTTGTCTTATTTA-AGAGACAAACTTTAATTCTGT-CGAAAACAGTGG-
1 TTACGA-GAATCGATGCTTGTCTTATTTAGAG-GATGAACTTTGATT-T-TACAAAAATAG-GGC
* * * ** * * * **
173498 AAAGGAAAGCTATTCTTGCGACACCAAAGCATCAATGTCGTGCATCCTAATGAGAAGACTAA-GT
61 AAAGAAAAG-TTTTCTTGCGAAAAGAAAACATCAATATCATTTATCCTAATGAGAAGA--AATGT
* * ** * * *
173562 TTGTGGTGCCTAATCCGGAAAA-GAATGGGGATTAGTT--TGAGCATTCATGTTTGTCTTATTTA
123 TTATAGTGCCTAATCC--AAAATGAATGAAGATTA-TTACT-AGAATCCATGTTTGTCTCATTTA
* * *** * * **
173624 AGAGACAAACTTTGATTTTATAAAAAACAG-CGACAAGAAAAG-TTTTCTTGCGACACCAAAGTA
184 AGAGACAAACTTT-AATTTACAAAAATTGGTGGA-AAG-AAAGCTTTTCTTGCGAAACCAAAACA
* * * * * *** * * * * **
173687 TCAATGTCTTGTATCTTATTGA-AGGGACGGTGTTT-T-GTCTCCCAATCTTGAAAACAATGTAG
246 TCAATATCGTGTATCCTAATGAGA-AGACTAAGTTTATGGT-GCCTAATCCTGAAAAGAATGGGG
* * * * ** *
173749 ATT-GTTATGAG-AATCGATGCTTGTCTTATTTAGGGGATGAACTTTGATT-T-T-----A---T
309 ATTAG-TATGAGTATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGG
* * * ** * * * *
173802 GGAAA-ATAAAG-ATTTCTATGCAAAAGAAAATCATCAATATCATTTATCCTAGTG-AGGAGA-A
372 GGAAAGA-AAAGCTTTTCT-TGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGG-GACA
* * * * ** * *
173863 TGTGCTTATAG-TGCCAAATC-ACAAAATTAAT-GACGATTA
434 -GTGTTTTTGGCT-CCCAATCTTGAAAA-GAATGGA-GATTG
* * * * * * * ** * * *
173902 TTACTAGAATCCATGTTTATCTCATTTAAAGCACAAACTTAGACTTTACAAAAATTGGTG---AG
1 TTACGAGAATCGATGCTTGTCTTATTTAGAGGATGAACTTTGATTTTACAAAAATAGG-GCAAAG
** ** * *
173964 -AAAGTTGCCTTTCTTGCGAAATCAAAACATCAATATCACGTATCCTATTGAGAAGACTATGTTT
65 AAAAG-T---TTTCTTGCGAAAAGAAAACATCAATATCATTTATCCTAATGAGAAGA-AATGTTT
* * * ** * *
174028 ATGGTACCTAAACCTAAAAAT-AATGGGGATT-TGTA-T-GACTACTCATGTTTGTCTTATTTAA
125 ATAGTGCCTAATCC--AAAATGAATGAAGATTAT-TACTAGAAT-C-CATGTTTGTCTCATTTAA
* * * * * *
174089 GAGACAAGCTTTGATTCCGT-CAAAAA-CGGGGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
185 GAGACAAACTTTAATT---TACAAAAATTGGTGGAAAG-AAAGCTTTTCTTGCGAAACCAAAACA
* ** * * * ** * * * *
174152 TCAATGTTTTGTATCCTATTGATG-GGAATGTGCTTT-TGGTACCCAATCTTGAAAAGAATGGAG
246 TCAATATCGTGTATCCTAATGA-GAAGACTAAG-TTTATGGTGCCTAATCCTGAAAAGAATGGGG
* * * * * * ** **
174215 AAT-GT-TGCGAG-AATCGATGCTTGTCTTTTTTAAGGGA-ATAACTTTGATTTTATGGAAAATA
309 ATTAGTAT--GAGTATTC-ATGTTTGTCTTATTTAAGAGACA-AACTTTGATTCTATCAAAAACG
* * * ** * * ** * * * * *
174276 GAGCAAAGAAAAGATTTTGATAC-AAAAGAAATCATCAATATCATTTCTCCTAATG-AGGAGA-A
370 GGGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGG-GACA
* * * * ** * **
174338 TGTGCTTATAG-TGCCTAATC-CCAAAATGAATGAAGATCA
434 -GTGTTTTTGGCT-CCCAATCTTGAAAA-GAATGGAGATTG
* * * * * * * *
174377 TTACTAGAATCTATGTTTGTCTCATTT-GAGGCATGAACTTAGACTTT--AAAAATTGGTG---G
1 TTACGAGAATCGATGCTTGTCTTATTTAGAGG-ATGAACTTTGATTTTACAAAAATAGG-GCAAA
* *
174436 GAAAATGCTTTTCTTGCGAAACCG-AAACATCAATATC-TCGTATCCTAATGAGAAGACTAA-GT
64 GAAAA-G-TTTTCTTGCGAAA-AGAAAACATCAATATCAT-TTATCCTAATGAGAAGA--AATGT
* ** * * * * *
174498 TTA-AGGTGCCTAATCCTAAAAAGAATGGGGATTAGTA-TAAGTATTCATGTTTGTCTTATTTTA
123 TTATA-GTGCCTAATCC-AAAATGAATGAAGATTATTACT-AGAATCCATGTTTGTCTCATTTAA
* * ** *
174561 GAGACAAACTTTGATTCTATCAAAAA-TGGGGGAAAGAAAAG-TTTTCTTGCTGTCACCAAAGCA
185 GAGACAAACTTTAATT-TA-CAAAAATTGGTGGAAAG-AAAGCTTTTCTTGC-GAAACCAAAACA
* * * * ** * * * * * *
174624 TCAATGTCATGTATCCTATTGA-AGGGGT-AGTCTTTTTGGCT-CCCAATCTTGAATAGAGTGGA
246 TCAATATCGTGTATCCTAATGAGAAGACTAAG--TTTATGG-TGCCTAATCCTGAAAAGAATGGG
* * ** * * * ** * * ** ***
174686 GATT-GTTATGAGAATTGATGCCTGTCTTCTTTAGGGGATGAACATTGATTTTATGGAAAATAAG
308 GATTAG-TATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGG
* * * * * * * * ** * * * * * * *
174750 GCAAAGAAACGATATCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAAT-AAGGAATA-TG
372 GGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGACAGTG
* * * * ** * **
174813 CTTATAG-TGCCGAAT-TACAAAATGAATGAAGATCA
437 TTTTTGGCT-CCCAATCTTGAAAA-GAATGGAGATTG
* * * * * * * * * **
174848 TTGCTG-GAATCCAAGTTTATCTCATTT-GAGGCATGAACTTAGACTTTACAAAAATTGGTGGGA
1 TTAC-GAGAATCGATGCTTGTCTTATTTAGAGG-ATGAACTTTGATTTTACAAAAATAGG-GCAA
* * * ** *
174911 A-AAAGGCCTTTCATGC-AGAACCAAAACATCAATATTGCA--TATCCTAATGAGAAGACAACGT
63 AGAAAAG-TTTTCTTGCGA-AAAGAAAACATCAATA-T-CATTTATCCTAATGAGAAGA-AATGT
* * ** ** ** * *
174972 TTGTGGTGCCTAATCCTGAAAA-GGGTGGGGATTAGCA-T-GACTATTCATGCTTG--TC--TTA
123 TTATAGTGCCTAATCC--AAAATGAATGAAGATTATTACTAGA--ATCCATGTTTGTCTCATTTA
* * * * ** * *
175030 AGGGACAAACTTTGATTCCATAAAAAACGGTGGAAAGGAAAGCTTTTCTTGCGACACCAAAGCAT
184 AGAGACAAACTTTAATT-TACAAAAATTGGTGGAAA-GAAAGCTTTTCTTGCGAAACCAAAACAT
* * ** * ** * * *
175095 CAATGTCGTGTATCCT-ATTA-AAGGGA-TGGTGTTTTCTACT-CCCAATCTTGAAAAGAATGGA
247 CAATATCGTGTATCCTAATGAGAA--GACT-AAG-TTTATGGTGCCTAATCCTGAAAAGAATGGG
* * * * * ** ** **
175156 AATT-GTTATGAG-AATCGATGCTTGTCTTATTTAGGGGATGAACTTTGATT-TAATGGAAAATA
308 GATTAG-TATGAGTATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT-ATCAAAAACG
* * * ** * * * ** * * * * *
175218 AGGCAAAGAAGAGAATTCCTTGCAAAAGAAAATCATCAATATCATTTCTCCTAATG-A-GGA-AT
370 GGGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGACA-
* * * * ** * **
175280 GTGCTTATAG-TGCCTAATC-ACAAAAGGAATGAAGATCA
434 GTGTTTTTGGCT-CCCAATCTTGAAAA-GAATGGAGATTG
** * * ** * ** * * **
175318 TTACTTGAATCCATGTTTGTCCCAATT-GAGGCATGAACTCAGACTTTACAAAAATTGGTGGGAA
1 TTACGAGAATCGATGCTTGTCTTATTTAGAGG-ATGAACTTTGATTTTACAAAAATAGG-GCAAA
* * ***
175382 -AAATGCTTTTCTTGCG-AAACAAAACATCAATATCGCATATCCTAATGAGAAGACTAA-GTTTA
64 GAAAAG-TTTTCTTGCGAAAAGAAAACATCAATATCATTTATCCTAATGAGAAGA--AATGTTTA
* * * * * * *
175444 TTGTGCCTAATCCTGAAAA-GAAT-AGGGATT-TGTA-TGAGTATTCATATTTGTCTTATATAAG
126 TAGTGCCTAATCC--AAAATGAATGA-AGATTAT-TACT-AGAATCCATGTTTGTCTCATTTAAG
* * ** * * ** *
175505 AGACAAACTTTGATTCTATAAAAAACGG-GGAGAGAAAAG-TTTTCTTGTGGCACCAAAGCATCA
186 AGACAAACTTTAATT-TACAAAAATTGGTGGAAAG-AAAGCTTTTCTTGCGAAACCAAAACATCA
* * * * *** * * ** *
175568 ATGTCATGTATCCTATTGA-AGGGACGGTGTTTTTGGCT-CCCAATTTTGAAAAGAATGGAGATT
249 ATATCGTGTATCCTAATGAGA-AGACTAAGTTTATGG-TGCCTAATCCTGAAAAGAATGGGGATT
* * * * * * ** * *** *
175631 -GTTACGAG-AATCGATGCTTGCCTTATTT-AGAG-CTGAACTTTGATTTTATGGAATATAAGGC
312 AG-TATGAGTATTC-ATGTTTGTCTTATTTAAGAGAC-AAACTTTGATTCTATCAAAAACGGGGG
* * * * * ** * * * * * * *
175692 AAAGAAAAGATTTCCATAC-AAAAGAGAATCATCAATATCATTTCTGCTAATG-A-GGA-ATGCG
374 AAAGAAAAGCTTTTCTTGCGACACCA-AAGCATCAATGTCATGTATCCTATTGAAGGGACA-GTG
* * * * ** **
175753 CTTATAG-TGCCTAATC-CCAAAATGAAT-GAGGATCA
437 TTTTTGGCT-CCCAATCTTGAAAA-GAATGGA-GATTG
* ** ** ** * * * *
175788 TTACTAGAATCCTTTTTTGTCCCATTT-GAGGCATGAACTTAGACTTTACAAAAATTGGGGAGAA
1 TTACGAGAATCGATGCTTGTCTTATTTAGAGG-ATGAACTTTGATTTTACAAAAATAGGGCA-AA
* ** * *
175852 -AAAGGATTTTCTTGCGAAACTAAAACATCAATATCGTGTATCCTAATGAGAAGACAATGTTTAT
64 GAAAAG-TTTTCTTGCGAAAAGAAAACATCAATATCATTTATCCTAATGAGAAGA-AATGTTTAT
* ** * * *
175916 GGTGCCTAATCCTGAAAA-GAATGGGGATTAGTA-T-GACTATTCATGTTTGTCTTATTTAAGAG
127 AGTGCCTAATCC--AAAATGAATGAAGATTATTACTAGA--ATCCATGTTTGTCTCATTTAAGAG
* * ** *
175978 ACAAACTTTAATTCCATCAAAAA-CGGTGGAAAGGAAAGCTTTTCTTGC-AACACCAAGGCCTCA
188 ACAAACTTTAATT-TA-CAAAAATTGGTGGAAA-GAAAGCTTTTCTTGCGAA-ACCAAAACATCA
* * *
176041 ATGTCGTGCATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCC-GAAAAATAATGGGGATTA
249 ATATCGTGTATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCCTG-AAAAGAATGGGGATTA
* * * *
176105 GTATGAGTATTCATGTTTGTCTCATTTAAGAGACAAACTTTGATTTTATCAAAAACGGTGAAAAG
313 GTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGGGGAAAG
* *
176170 AAAAG-TTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGACGGTGTTTTTG
378 AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGACAGTGTTTTTG
*
176234 GCTCCCAATTTTGAAAAGAATGGAGATTG
443 GCTCCCAATCTTGAAAAGAATGGAGATTG
* ** * *
176263 TTACGAGAATCGATGCTTGTCTTATTTAGA-GCTGAACTTTGATTTTATGGAATATAAGGCAAAG
1 TTACGAGAATCGATGCTTGTCTTATTTAGAGGATGAACTTTGATTTTA-CAAAAATAGGGCAAAG
* * * * * * *
176327 AAAAGATTTCCATAC-AAAAGAGAATCATCAATATCATTTCTACTAATGAG--G-AATGCGCTTA
65 AAAAG-TTTTCTTGCGAAAAGA-AAACATCAATATCATTTATCCTAATGAGAAGAAAT--GTTTA
* * * * * * * *
176388 TAGTGCCTAATCCCAAAATGAATGAGGATCATTACTACAATCCTTTTTTATCCCATTT--GAGGC
126 TAGTGCCTAAT-CCAAAATGAATGAAGATTATTACTAGAATCCATGTTTGTCTCATTTAAGAGAC
* * * *
176451 ATGAAC-TTAGACTTTACAAAAATTGGGGGGAAA-AAGGATTTTCTTGCGAAACTAAAACATCAA
190 A--AACTTTA-A-TTTACAAAAATT-GGTGGAAAGAAAGCTTTTCTTGCGAAACCAAAACATCAA
* *
176514 TATCATGTATCCTAATGAGAAGAC-AATGTTTATGGTGCCTAATCCTGAAAAGAGTGGGGATTAG
250 TATCGTGTATCCTAATGAGAAGACTAA-GTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAG
* * * * *
176578 TATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTAATTCCATCAAAAACGGTGGAAAGG
314 TATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGGGGAAAGA
* * * ** * *
176643 AAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGCATCCTAATG-AGAATACTA-AGTTTAT
379 AAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAG-GGAC-AGTGTTTTT
* * *
176706 GG-TGCCTAATC-CGAAAAAGAATGGGGATTAG
442 GGCT-CCCAATCTTG-AAAAGAATGGAGATT-G
* * * ** * *
176737 -TATGAGTATTC-ATGTTTGTCTTATTTA-AGAGACAAACTTTGATTTTATCAAAAA-CGGTGAA
1 TTACGAG-AATCGATGCTTGTCTTATTTAGAG-GATGAACTTTGATTTTA-CAAAAATAGG-GCA
* ** ** * * * *
176798 AAGAAAAGTTTTCTTGCGACACCAAAGTATCAATGTC-TTGTATCCTATTGA-AGGGACAGTGTT
62 AAGAAAAGTTTTCTTGCGAAAAGAAAACATCAATATCATT-TATCCTAATGAGA-AGA-AATGTT
* * * * * * * * * * *
176861 T-TTGTCTCCCAATCTTGAAAA-GAGTGGAGATTGTTA-TGAGAATCGATGCTTGTCTTATTTAG
124 TATAGT-GCCTAATC--CAAAATGAATGAAGATTATTACT-AGAATCCATGTTTGTCTCATTTAA
* ** * ** *** * * **
176923 GGGATGAACTTTGATTTTATGGAAAA-TAAAGCAAAGGAAAG-ATTTCTATGC-AAAAGAAAATC
185 GAGACAAACTTT-AATTTA-CAAAAATTGGTGGAAA-GAAAGCTTTTCT-TGCGAAACCAAAA-C
* * * * * ** * * * * * **
176985 TTCAATATCATTTATCCTAGTGA-AGAGAATGTGCTTATAGTGCCAAATCC-CAAAATTAATGAC
245 ATCAATATCGTGTATCCTAATGAGA-AGACTAAGTTTATGGTGCCTAATCCTGAAAA-GAATGGG
* * * *
177048 GATTA-T-TGCTAGAATCCATGTTTGTCTAATTTAA-AG-CATGAACTTAGACTT-TA-CAAAAA
308 GATTAGTATG--AGTATTCATGTTTGTCTTATTTAAGAGACA--AACTTTGA-TTCTATCAAAAA
* ** * * * * *** *
177107 TTGGTGGGAAAG--TTGCCTTTCTTGCGAAACCAAAACATCAATATTGCGTATCCTATTG-AGAA
368 -CGG-GGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAG-G
* * * * * * * *
177169 GACTA-CGTTTATGG-TACCTAAACCTAAAAATAATGGGGATTTG
430 GAC-AGTGTTTTTGGCT-CCCAATCTTGAAAAGAATGGAGA-TTG
* * * * * * * *
177212 TT-TGACTATTC-ATGTTTGTCATATTTAAGAGCCA--AACCTTGATTTTCTATCAAAAA-CGGT
1 TTACGA-GAATCGATGCTTGTCTTATTT-AGAG-GATGAACTTTGA-TTT-TA-CAAAAATAGG-
* * * * ** * * * ** * *
177272 GGAAAGAAAAGCTTTTCATGTGACACCAAAGCAACAATGTCAAGTATCTTAATGAAGGAA-ATAT
59 GCAAAGAAAAG-TTTTCTTGCGAAAAGAAAACATCAATATCATTTATCCTAATG-A-GAAGAAAT
* ** * * * *** * *
177336 GTTT-TAGGTTCCTAATCCTGAACTTTGATTAT-AAGGA-AAATAGGTCA-AAGAAAAGATT-T-
121 GTTTATA-GTGCCTAATCC--AA-AATGA--ATGAA-GATTATTA-CT-AGAATCCATGTTTGTC
* * * * *** * * * * * *
177395 TCATGTAA-AGGA-AAATCATCAATAT-CATTTATCCTAGT-GAGGAGAATG-TGCTTGTAGCGC
177 TCATTTAAGA-GACAAA-CTTTAATTTACAAAAAT--TGGTGGA-AAGAAAGCT-TTTCTTGCG-
* * * ** * * * *
177455 CAAATCGCAAAATTAATGACA-ATCGT-TA--CTAGAATCCATGTTTGTCTCA-TTTAAGGCACG
235 -AAA-C-CAAAA--CATCA-ATATCGTGTATCCT--AAT-GA-G-AAGACTAAGTTTATGG--TG
* * * * * ** ** *** *
177515 AACTTATACTTTACAAA-AATTGGTGGGAAAATT-GCCTTTCTTGCGAAACCAAAACATCAATAT
287 -CCTAAT-CCTGA-AAAGAA-T-G-GGG---ATTAG----T-AT--G--A-GTATTCATGTTTGT
* * ** ** ** **
177578 CGTGTATCCTAATCAGAGGACTATGTTT-ATGGTGCCTAATCCTGAAAAGAATGGGGATTTG-TT
333 C-T-TAT--T--TAAGA-GACAAACTTTGAT--T--CT-AT-C--AAAA-ACGGGGGA-AAGAAA
* * ** * ** * * * ** * * *
177641 TGACTATTCATGTTTGTCTTATTTAAGAG-ATAAACTTTGAT-TCCATCAAAAATG-GGGGAAAG
381 AG-CTTTTC-T-TGCGAC--A-CCAA-AGCATCAA-TGTCATGT--ATC-CTATTGAAGGGACAG
* * * * * ** * *
177703 AAAAGCTTTTCTTGCGACACCAA---AG-CACCAATGTCAGGATCCTA
435 ---TG-TTTT-TGGC-TC-CCAATCTTGAAAAGAATG-GA-GAT--TG
* * ** * * * ** * * *
177747 TTGATGGGAAT-G-TGCTTTTCGTACCCAATCTAG-GAAGGAA-TGGGGATTATTGCGAGAATCG
1 TT-ACGAGAATCGATGC--TT-GT--CTTATTTAGAGGATGAACT-TTGATT-TTACAAAAAT--
* * **
177808 ATGCTTGTCTTTTTTAAGGGATAAACTTTGATTTTAAGGAAAATAGAGCAAAGAAAAGATTTTGA
56 A-G---GGC------AA-AGA-AAA----G-TTTT------CTT---GC--------------G-
* * * * *
177873 TACAAAAGAAAATCATTAATATCATTTCTCCTAATAAGGAG-AATGTGCTTATAGTGCCT-ATTC
80 ---AAAAGAAAA-CATCAATATCATTTATCCTAATGAGAAGAAATGT--TTATAGTGCCTAATCC
*** * * * * * *
177936 ACAAAATGAATGAAGATCATTATTAGAATCTATATTTGTCTCATTT--GAGGCATGAAC-TTAGA
139 A-AAATGAAT-GAAGATTATTACTAGAATCCATGTTTGTCTCATTTAAGAGACA--AACTTTA-A
* * *
177998 CTTTAAAAAAATTGGTGGGAA-AAGGCTTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCT
199 -TTTACAAAAATTGGTGGAAAGAAAGCTTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCT
* * *
178062 AATGAGAAGACCAAGTTTAT-GTGCTTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATG
263 AATGAGAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATG
* *
178126 TTTGTCTTATTTTAGAGACAAACTTTGATTTTATCAAAAACGGGGGAAAGAAAAG-TTTTCTTGC
328 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGGGGAAAGAAAAGCTTTTCTTGC
* * *
178190 TGTCACCAAAGCATCAATGTCATGTATCCTATTGAAGGGGCAATGTTTTTGGCTCCCAATCTTGA
393 -GACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGACAGTGTTTTTGGCTCCCAATCTTGA
* *
178255 ATAGAGTGGAGATTG
457 AAAGAATGGAGATTG
* * * * ** * * *
178270 TTACGAGAATCGATGCCTGTCTTTTTTAGGGGATGAACATTGATTTTATGGAAAATAAGGCGATG
1 TTACGAGAATCGATGCTTGTCTTATTTAGAGGATGAACTTTGATTTTA-CAAAAATAGGGCAAAG
* * * * * * *
178335 AAACGATATCCATGC-AAAAGAAAATCATCAATATCATTTCTCCTAAT-A-AGGAATATGCTTAT
65 AAAAG-TTTTCTTGCGAAAAGAAAA-CATCAATATCATTTATCCTAATGAGAAGAA-ATGTTTAT
* ** * * * * * *
178397 AGTGCCAAATTATAAAATGAATGAAGATCATTGCTGGAATTCATGTTTATCTCATTT--GAGGCA
127 AGTGCCTAA-TCCAAAATGAATGAAGATTATTACTAGAATCCATGTTTGTCTCATTTAAGAGACA
** * * * *
178460 TGAAC-TTAGACTGCACAAAAATTGGTGGGAAA-AAGGCCTTTCATGCGGAACCAAAACATCAAT
191 --AACTTTA-A-TTTACAAAAATTGGT-GGAAAGAAAGCTTTTCTTGCGAAACCAAAACATCAAT
* ** * * ** *
178523 ATTGCATATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCGGAAAAGGGTGGGGATTAGAA
251 ATCGTGTATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTA
* * * * * * *
178588 TCACTATTCATGCTTGTCTTATTTAAGGGACAAACTTTGATTCCATCAAAAACGGTGGAAAGGAA
316 TGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGGGGAAAGAAA
* * * * *
178653 AG-TTTTCTTGCGACACCAAAGCATCAATGTCAAGTATCCTATTAAAGGGGCGGTGTTTTCT-AC
381 AGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGACAGTGTTTT-TGGC
*
178716 TCCCAATCTTGAAAAGAATGGAAATTG
445 TCCCAATCTTGAAAAGAATGGAGATTG
* * * * ** *
178743 TTATGAGAATCGATACTTGTCTTATTTAGGGGATGAACTTTGATTTAATGGAAAATAAGGCAAAG
1 TTACGAGAATCGATGCTTGTCTTATTTAGAGGATGAACTTTGATTTTA-CAAAAATAGGGCAAAG
* * * *
178808 AAAAGAATTCCATGC-AAAAGAAAATCATCAATATCATTTGTCCTAATGAG--G-AATGTGCTTA
65 AAAAG-TTTTCTTGCGAAAAGAAAA-CATCAATATCATTTATCCTAATGAGAAGAAATGT--TTA
* * * *
178869 TAGTGCCCAATCACAAAATGAATGGAGATTATTACTAGAATCCATGTTTGTCCCATTT--GTGAC
126 TAGTGCCTAATC-CAAAATGAATGAAGATTATTACTAGAATCCATGTTTGTCTCATTTAAGAGAC
*
178932 ATGAAC-TTAGACTTTACAAAAATTGGTTGGAAA-AATGCTTTTCTTGCGAAA-CAAAACATCAA
190 A--AACTTTA-A-TTTACAAAAATTGG-TGGAAAGAAAGCTTTTCTTGCGAAACCAAAACATCAA
* * * *
178994 TATCATGTATCCTAATGAGAAGACTAAATTTATTGTGCCTAATCCTGAAAAGAATAGGGATTAGT
250 TATCGTGTATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGT
* * * *
179059 ATGAGTCTTCATTTTTGTCTTATATAAGAGACAAACTTTGATTCTATAAAAAACGGGGGAAAGAA
315 ATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGGGGAAAGAA
* *
179124 AAG-TTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGGCAGTGTTTTTGGC
380 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGACAGTGTTTTTGGC
** *
179188 TCCCAATCTTGACTAGAGTGGAGATTG
445 TCCCAATCTTGAAAAGAATGGAGATTG
* * * * * ** * *
179215 TTACAAGAATCGATGCCTGTCTTCTTTAGGGGATGAACATTGATTTTATGGAAAATAAGGCAATG
1 TTACGAGAATCGATGCTTGTCTTATTTAGAGGATGAACTTTGATTTTA-CAAAAATAGGGCAAAG
* * * * *
179280 AAACGATATCCATGC-AAAAGAAAATCATCAATATCATTTCTCCTAATGAG--G-AATGTGCTTA
65 AAAAG-TTTTCTTGCGAAAAGAAAA-CATCAATATCATTTATCCTAATGAGAAGAAATGT--TTA
* * *
179341 TAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCCCATTT--GAGGC
126 TAGTGCCTAATC-CAAAATGAATGAAGATTATTACTAGAATCCATGTTTGTCTCATTTAAGAGAC
* * *
179404 ATGAACTTAAACTTTACAAAAATTAGGAGGAAA-AAGGCTTTTCTTGCGAAACCAAAACATCAAT
190 A--AACTTTAA-TTTACAAAAATT-GGTGGAAAGAAAGCTTTTCTTGCGAAACCAAAACATCAAT
* * * *
179468 ATCGCGTATTCTAATGAGAAGACTAAGTTTATTGTGCCTAATCCTGAAAAGAATGGGGATTAGTG
251 ATCGTGTATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTA
* * * *
179533 TGAGTATCCAAGTTTGTCTTATTTAAGAGACAAACTTTGATACTATAAAAAACGGGGGAAAGAAA
316 TGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGGGGAAAGAAA
* * * * **
179598 AG-TTTTCTTGTGACACCAAAGCATCAATGTCATGCATCCTATTGAAGGGACGGTGTTTATACCT
381 AGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGACAGTGTTTTTGGCT
*
179662 CCCAATCTTGAAAAAAATGGAGATTG
446 CCCAATCTTGAAAAGAATGGAGATTG
* * *
179688 TTACGAGAATCGATGCTTGTCTTATTTAGGGGATGAACTTTGATTTATA-GAAAATAAGGCAAAG
1 TTACGAGAATCGATGCTTGTCTTATTTAGAGGATGAACTTTGATTT-TACAAAAATAGGGCAAAG
* ** *
179752 AAAAGATTTCCAAGC-AAAAGAAAATCATCAATATCATTTCTCCTAATGAG--G-AATGTGCTTA
65 AAAAG-TTTTCTTGCGAAAAGAAAA-CATCAATATCATTTATCCTAATGAGAAGAAATGT--TTA
* * * * * * * *
179813 AAGTGCCTAATCCCAAAATTAATGAAGATCATTACTAGAATCCCTGTTTGTCCCATTTGAGGGAT
126 TAGTGCCTAAT-CCAAAATGAATGAAGATTATTACTAGAATCCATGTTTGTCTCATTTAAGAGAC
* * * * * *
179878 GAAC-ATAGCCTTTACAAAAACTGGTGGGAAA-AAGGCTTTTCTTGCGAAACCAGAACATCAATA
190 AAACTTTA--ATTTACAAAAATTGGT-GGAAAGAAAGCTTTTCTTGCGAAACCAAAACATCAATA
* * *
179941 TCGTGTATCCTAATGAGAAGAC-AATGTTTATAGTGCCTAACCCTGAAAAGAATAGGGATTAGTA
252 TCGTGTATCCTAATGAGAAGACTAA-GTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTA
* * * *
180005 TGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAA-AGA
316 TGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGGGGAAAGA-A
* * *
180069 AAGCTTTTCTTACGACACCCAAGCATCAATGTCATGCATCCTA
380 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTA
180112 AAGAGAAGAC
Statistics
Matches: 11210, Mismatches: 2177, Indels: 1732
0.74 0.14 0.11
Matches are distributed among these distances:
461 5 0.00
462 5 0.00
463 8 0.00
464 133 0.01
465 290 0.03
466 223 0.02
467 37 0.00
468 5 0.00
469 96 0.01
470 580 0.05
471 529 0.05
472 2182 0.19
473 1982 0.18
474 1035 0.09
475 1738 0.16
476 1660 0.15
477 106 0.01
478 61 0.01
479 16 0.00
480 17 0.00
481 5 0.00
482 14 0.00
483 2 0.00
484 8 0.00
485 8 0.00
486 5 0.00
487 2 0.00
488 1 0.00
489 3 0.00
490 3 0.00
491 2 0.00
492 4 0.00
493 3 0.00
496 5 0.00
500 1 0.00
502 5 0.00
504 2 0.00
505 8 0.00
506 3 0.00
507 4 0.00
508 1 0.00
509 1 0.00
510 1 0.00
511 3 0.00
512 5 0.00
513 1 0.00
514 3 0.00
515 1 0.00
516 1 0.00
518 2 0.00
519 11 0.00
520 20 0.00
521 6 0.00
522 11 0.00
523 9 0.00
524 6 0.00
525 6 0.00
526 7 0.00
527 11 0.00
528 4 0.00
529 8 0.00
530 11 0.00
531 6 0.00
532 13 0.00
533 5 0.00
534 5 0.00
535 10 0.00
536 9 0.00
537 10 0.00
538 13 0.00
539 11 0.00
540 4 0.00
541 2 0.00
542 2 0.00
543 1 0.00
544 1 0.00
545 1 0.00
546 7 0.00
547 6 0.00
549 3 0.00
550 2 0.00
551 6 0.00
552 1 0.00
553 7 0.00
554 1 0.00
555 5 0.00
556 1 0.00
558 1 0.00
559 1 0.00
561 2 0.00
562 3 0.00
563 1 0.00
564 1 0.00
565 3 0.00
566 1 0.00
567 4 0.00
568 5 0.00
569 3 0.00
570 1 0.00
572 4 0.00
573 6 0.00
574 9 0.00
575 5 0.00
576 5 0.00
577 3 0.00
578 6 0.00
579 9 0.00
580 20 0.00
581 19 0.00
582 14 0.00
583 25 0.00
584 2 0.00
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (471 bp):
TTACGAGAATCGATGCTTGTCTTATTTAGAGGATGAACTTTGATTTTACAAAAATAGGGCAAAGA
AAAGTTTTCTTGCGAAAAGAAAACATCAATATCATTTATCCTAATGAGAAGAAATGTTTATAGTG
CCTAATCCAAAATGAATGAAGATTATTACTAGAATCCATGTTTGTCTCATTTAAGAGACAAACTT
TAATTTACAAAAATTGGTGGAAAGAAAGCTTTTCTTGCGAAACCAAAACATCAATATCGTGTATC
CTAATGAGAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCA
TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGGGGAAAGAAAAGCTTTTCTT
GCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGACAGTGTTTTTGGCTCCCAATCTTG
AAAAGAATGGAGATTG
Found at i:169032 original size:476 final size:477
Alignment explanation
Indices: 168145--170246 Score: 2445
Period size: 476 Copynumber: 4.4 Consensus size: 477
168135 AAGGAAAGCT
* * * * * * *
168145 TTTCTTGCGACACCAAAGCATCAATGTCGTGCATCCTAATAAGAAGACTAAGTTTATGATGCCTA
1 TTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTAAGTTTATGGTGCCTA
* * *
168210 ATCCAAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTCATTTAAGAGACAAACTTTGA
66 ATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* * * * **
168275 TTTTATCAAAAACGGCGAAAAGAAAAG-TTTTCTTGTGACACCAAAGCATCAATGTCTTGTATCC
131 TTCTATCAAAAACGGGGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAAGTATCC
* * ** * *
168339 TATTGAAGGGAC-GGTGTTTTTGGCTCCCAATCTTGAAAACAATGGAGATTGTTATGAGAATCAA
196 TATTGAAGGGACATGTGTTTTTGGCTCCCAATCCTGAAAATGATGGAGATTGTTACGAGAATCGA
* * * * *
168403 TGCTTGCCTTATTTAGGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGGAAAGATTTCTC-
261 TGCCTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTC-CA
* * *
168467 TGCACAAGAAAATCATCAATATCATTTATCCTAGTGAGGAGAATGTGCTTATGGCGCCAAATCAC
325 TGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGCGCCAAATCAC
* * * * * *
168532 AAAATTAATGATGATTATTACTAGAATCCATGTTTGTCTCATTTAAAGCACAAACTTAGACTTTA
390 AAAATGAATGAAGATCATTACTAGAATCCATGTTTATCTCATTTAAGGCACGAACTTAGACTTTA
**
168597 CAAAAATTGGTGGGAAAGTTGCC
455 CAAAAATTGGTGGGAAAAATGCC
* * * * *
168620 TTTCTTGCGAAACCAAAATATCAATAACGCGTATCCTATTGAGAAGACTACGTTTATGGTACCTA
1 TTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTAAGTTTATGGTGCCTA
* * * * * *
168685 CA-CCTAAAAATAATGGGGATTTGTATGACTATTCATATTTGTCATATTTAAGAGCCAAACCTTG
66 -ATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
* * * *
168749 ATTCTATCAAATACGGTGGAAAGAAAAGCTTTTCATGCGACACCAGAGCATCAATGTCAAGTATC
130 ATTCTATCAAAAACGGGGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAAGTATC
* * * * * * * ** **
168814 TTAATGAA-GGACATATGTTTTAGGTTCCTAATCCTGAAAATGATGGTGACCGCAACGAGAATCG
195 CTATTGAAGGGACATGTGTTTTTGGCTCCCAATCCTGAAAATGATGGAGATTGTTACGAGAATCG
* * * *
168878 ATGCCCT-TCTTATTTAAGGGATGAACTTCGACTATAAGGAAAAT-AGGTAAAAGAAAAGATTTC
260 ATG-CCTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGG-CAAAGAAAAGATTTC
* * *
168941 CACGGAAAAGAAAATCATCAATATCATTTATCCTAGTGAGGAGAATGTGCTTATAGCGCCAAATC
323 CATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGCGCCAAATC
* * * *
169006 ACAAAATTAATGACGATCATTACTAGAATCCATGTTTATCTCATTTAAGGCACGGACTTAGGCTT
388 ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCTCATTTAAGGCACGAACTTAGACTT
*
169071 TACAAAAATTGGTGGGAAAATTGCC
453 TACAAAAATTGGTGGGAAAAATGCC
* * *
169096 TTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATCAGAGGACTATGTTTATGGTGCCTA
1 TTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTAAGTTTATGGTGCCTA
* * * *
169161 ATCCTGAAAAGAACGGGGATTTGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAGCTTTGA
66 ATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* * *
169226 TTCCT-TCAAAAACGGGGGAAAGAAAAGCATTTCTTGCGACACCAAAGCATCAATGTTATGTATC
131 TT-CTATCAAAAACGGGGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAAGTATC
* * * * * *
169290 CTATTGATGGGA-ATGTGCTTTTGG-TACCTAATCTTGGAAA-GAATGGAGATTGTTGCGAGAAT
195 CTATTGAAGGGACATGTGTTTTTGGCT-CCCAATCCTGAAAATG-ATGGAGATTGTTACGAGAAT
* *
169352 CGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAAT-AGAGCAAAGAAAAGATTT
258 CGATGCCTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAG-GCAAAGAAAAGA-TT
** * * * * * ** * *
169416 TGAAAG-AAAAGAAAGTCATCAGTATCATTTCTCCTAATGAGGTGAATGTGCTTATAATGCCTAT
321 TCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGCGCCAAA
* * * *
169480 TCACAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGAGGCATGAACTTAGAC
386 TCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCTCATTTAAGGCACGAACTTAGAC
* *
169545 TTTAAAAAAATTGGT-GGAAAAATGCT
451 TTTACAAAAATTGGTGGGAAAAATGCC
* * *
169571 TTTCTTGTGAAACCGAAACATCAATATCCCGTATCCTAATGAGAAGACTAAGTTTATGGTGCCTA
1 TTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTAAGTTTATGGTGCCTA
*
169636 ATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTTAA-AGACAAACTTTG
66 ATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTA-TTTAAGAGACAAACTTTG
* *
169700 ATTCTATCAAAAACGGGGGAAAAAAAAG-TTTTCTTGCTGTCACCAAAGCATCAATGTCATA-TA
130 ATTCTATCAAAAACGGGGGAAAGAAAAGCTTTTCTTGC-GACACCAAAGCATCAATGTCA-AGTA
* *
169763 TCCTATTGAAGGGGCA-GTGTTTTTGGCTCCCAAT-CT-TAAATGGAGTGGAGATTGTTACGAGA
193 TCCTATTGAAGGGACATGTGTTTTTGGCTCCCAATCCTGAAAAT-GA-TGGAGATTGTTACGAGA
* * * *
169825 ATCGATGCCTGTCTTCTTTAGGGGATGAA-TATTGA-TTTAATGGAAAATAAGGCAAAGAAACGG
256 ATCGATGCCTGTCTTATTTAAGGGATGAACT-TTGATTTTAA-GGAAAATAAGGCAAAGAAAAGA
* * * * * *
169888 TATCCATGCAAAAGAAAATCATCAACATCATTTCTCCTAAAT-ATG-GAATATGCTTATAGTGCC
319 TTTCCATGCAAAAGAAAATCATCAATATCATTTATCCT-AATGAGGAGAATGTGCTTATAGCGCC
* * * * * * * *
169951 TAATTACAAAATGAATGAAGATCATTGCTGGAATCTATGTTTATCTCATTTGAGGCATGAACTTC
383 AAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCTCATTTAAGGCACGAACTTA
*
170016 GACTTTACAAAAATTGGTGGGAAAAAGGCC
448 GACTTTACAAAAATTGGTGGGAAAAATGCC
* * * * *
170046 TTTCATGCGGAACCAAAACATCAATATTGCATATCCTAATGAGAAGAC-AATGTTTGTGGTGCCT
1 TTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTAA-GTTTATGGTGCCT
* ** * * * *
170110 AATCCTGAAAAGGGTGGGGATTAGAATGAATATTCATGCTTGTCTTATTTAAGGGACAAACTTTG
65 AATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
* * * * * * **
170175 ATTCCATCAAAAATGGTGGAGAGGAAAGCTTTTCTTCCGACACCAAAGCATCAATGTCGTGTATC
130 ATTCTATCAAAAACGGGGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAAGTATC
170240 CTATTGA
195 CTATTGA
170247 GTACACTAAG
Statistics
Matches: 1389, Mismatches: 205, Indels: 66
0.84 0.12 0.04
Matches are distributed among these distances:
473 3 0.00
474 121 0.09
475 593 0.43
476 659 0.47
477 13 0.01
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.31
Consensus pattern (477 bp):
TTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTAAGTTTATGGTGCCTA
ATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
TTCTATCAAAAACGGGGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAAGTATCC
TATTGAAGGGACATGTGTTTTTGGCTCCCAATCCTGAAAATGATGGAGATTGTTACGAGAATCGA
TGCCTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCAT
GCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGCGCCAAATCACA
AAATGAATGAAGATCATTACTAGAATCCATGTTTATCTCATTTAAGGCACGAACTTAGACTTTAC
AAAAATTGGTGGGAAAAATGCC
Found at i:176845 original size:631 final size:630
Alignment explanation
Indices: 172876--177312 Score: 3792
Period size: 631 Copynumber: 7.0 Consensus size: 630
172866 TGGGAAAAAT
* * * * *
172876 GCTTTTCTTGCGA-AACAAAACATCAATATCGTGTATCCTAATGAGAAGACTAAGTTTATTGTGC
1 GCTTTTCTTGCGACACCAAAGCATCAATGTCGTGCATCCTAATGAGAAGACTAAGTTTATGGTGC
* * * * *
172940 CTAATCCTGGAAAGAATAGGGATTAGTATGAGTACTCATATTTGTCTTATATAAGAGACAAACTT
66 CTAATCC-GAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTT
* * * * * * *
173005 TGATTCTATAAAAAAACGGGGGAAAGAAAAGTTTTCTTGTGACCCCAAAGCATCATTGTCATGTA
130 TGATTTTAT-AAAAAACGGTGAAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCTTGTA
*
173070 TCCTATTGAAGGGATGGTGTTTTTGGCTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATC
194 TCCTATTGAAGGGACGGTGTTTTTGGCTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATC
* *
173135 GATGCTTGTCTTACTTAGGGCTAAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCCA
259 GATGCTTGTCTTATTTAGGGCTGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCCA
* *
173200 TGCAAAAGAAAATCATCAATATCATTTTTCCTAATGAGGAATGCGCTTATAATGCCTAATCCCAA
324 TGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAATGCGCTTATAGTGCCTAATCCCAA
* *
173265 AATGAATGAGGATCATTACTAGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGACTTTACA
389 AATGAATGAGGATTATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACA
*
173330 AAAATTGGGGGG-AAAAGGATTTTCTTGCGAAACTAAAACATCAATATCGTGTATCCTAATGAGA
454 AAAATTGGGGGGAAAAAGGATTTTCTTGCGAAACTAAAACATCAATATCATGTATCCTAATGAGA
173394 AGACAATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCT
519 AGACAATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCT
* * *
173459 TATTTAAGAGACAAACTTTAATTCTGTCGAAAACAGTGGAAAGGAAA
584 TATTTAAGAGACAAACTTTAATTCTATCAAAAACGGTGGAAAGGAAA
* *
173506 GCTATTCTTGCGACACCAAAGCATCAATGTCGTGCATCCTAATGAGAAGACTAAGTTTGTGGTGC
1 GCTTTTCTTGCGACACCAAAGCATCAATGTCGTGCATCCTAATGAGAAGACTAAGTTTATGGTGC
* *
173571 CTAATCCGGAAAAGAATGGGGATTAGTTTGAGCATTCATGTTTGTCTTATTTAAGAGACAAACTT
66 CTAATCC-GAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTT
* * * *
173636 TGATTTTATAAAAAACAGCGACAAGAAAAGTTTTCTTGCGACACCAAAGTATCAATGTCTTGTAT
130 TGATTTTATAAAAAACGGTGAAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCTTGTAT
* * * * *
173701 CTTATTGAAGGGACGGTG-TTTTGTCTCCCAATCTTGAAAACAATGTAGATTGTTATGAGAATCG
195 CCTATTGAAGGGACGGTGTTTTTGGCTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCG
* *
173765 ATGCTTGTCTTATTTAGGGGATGAACTTTGATTTTATGGAAAAT----------AAAGATTTCTA
260 ATGCTTGTCTTATTTA-GGGCTGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCCA
* * * *
173820 TGCAAAAGAAAATCATCAATATCATTTATCCTAGTGAGGAGAATGTGCTTATAGTGCCAAATCAC
324 TGCAAAAGAAAATCATCAATATCATTTATCCTAATGA-G-GAATGCGCTTATAGTGCCTAATCCC
* * * * * **
173885 AAAATTAATGACGATTATTACTAGAATCCATGTTTATCTCATTTAAAGCACAAACTTAGACTTTA
387 AAAATGAATGAGGATTATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTA
* * *** ** * *
173950 CAAAAATTGGTGAGAAAGTTGCCTTTCTTGCGAAA-TCAAAACATCAATATCACGTATCCTATTG
452 CAAAAATTGGGGGGAAAAAGGATTTTCTTGCGAAACT-AAAACATCAATATCATGTATCCTAATG
* * * * * * *
174014 AGAAGACTATGTTTATGGTACCTAAACCTAAAAATAATGGGGATTTGTATGACTACTCATGTTTG
516 AGAAGACAATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTG
* * ** * *
174079 TCTTATTTAAGAGACAAGCTTTGATTCCGTCAAAAACGGGGGAAAGAAAA
581 TCTTATTTAAGAGACAAACTTTAATTCTATCAAAAACGGTGGAAAGGAAA
** * * * * **
174129 GCTTTTCTTGCGACACCAAAGCATCAATGTTTTGTATCCTATTGATG-GGAATGTGCTTT-TGGT
1 GCTTTTCTTGCGACACCAAAGCATCAATGTCGTGCATCCTAATGA-GAAGACTAAG-TTTATGGT
* * * * * * * * *
174192 ACCCAATCTTGAAAAGAATGGAGAAT-GT-TGCGAG-AATCGATGCTTGTCTTTTTTAAGGGA-A
64 GCCTAATC-CGAAAAGAATGGGGATTAGTAT--GAGTATTC-ATGTTTGTCTTATTTAAGAGACA
** ** * * ** * * ** * *
174253 TAACTTTGATTTTATGGAAAATAGAGCAAAGAAAAGATTTTGATAC-AAAAGAAATCATCAATAT
125 -AACTTTGATTTTATAAAAAACGGTGAAAAGAAAAG-TTTTCTTGCGACACCAAAGCATCAATGT
* * ** * * * * ** * **
174317 CATT-TCTCCTAATG-AGGAGAATGTGCTTATAG-TGCCTAATC-CCAAAATGAATGAAGATCAT
188 C-TTGTATCCTATTGAAGG-GACGGTGTTTTTGGCT-CCCAATCTTGAAAA-GAATGGAGATTGT
* * * * * * * ***
174378 TACTAGAATCTATGTTTGTCTCATTT-GAGGCATGAACTTAGACTTTA---AAAAT-TGG-TGGG
249 TACGAGAATCGATGCTTGTCTTATTTAG-GGC-TGAACTTTGATTTTATGGAAAATAAGGCAAAG
* * * * * * ** *
174437 AAAATGCTTTTCTTGCGAAACCG-AAA-CATCAATATC-TCGTATCCTAATGAGAAGACTAAGTT
312 AAAA-GATTTCCATGC-AAA-AGAAAATCATCAATATCAT-TTATCCTAATGAG--GAATGCGCT
* * * * * * *
174499 TA-AGGTGCCTAATCCTAAAAAGAATGGGGATTAGTA-TAAGTATTCATGTTTGTCTTATTTTAG
371 TATA-GTGCCTAATCCCAAAATGAATGAGGATTATTACT-AGAATCCATGTTTGTCTCA-TTT-G
* * * * ** * *
174562 AGACA--AACTTTGA-TTCTATCAAAAA-TGGGGGAAAGAAAAG-TTTTCTTGCTGTCACCAAAG
432 AGGCATGAACTTAGACTT-TA-CAAAAATTGGGGGGAA-AAAGGATTTTCTTGC-GAAACTAAAA
* * * ** * * * * * * *
174622 CATCAATGTCATGTATCCTATTGA-AGGGGTAGTCTTTTTGGCT-CCCAATCTTGAATAGAGTGG
493 CATCAATATCATGTATCCTAATGAGA-AGACAATGTTTATGG-TGCCTAATCCTGAAAAGAATGG
* ** * ** * * * ** * * * *
174685 AGATT-GTTATGAGAATTGATGCCTGTCTTCTTTAGGGGATGAACATTGATTTTATGGAAAATA-
556 GGATTAG-TATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTAATTCTAT-CAAAA-AC
* *
174748 AG-GCAAA-GAAA
618 GGTGGAAAGGAAA
* * * * * * ** * * * * * * * * *
174759 CGATATCCATGCAAAAGAAAATCATCAATATCATTTC-TCCTAAT-A-AGGAATATGCTTATAGT
1 -GCTTTTCTTGCGACACCAAAGCATCAATGTC-GTGCATCCTAATGAGAAGACTAAGTTTATGGT
* * ** * * * * * * * * *
174821 GCCGAATTAC-AAAATGAATGAAGATCATTGCTG-GAATCCAAGTTTATCTCATTT--GAGGCAT
64 GCCTAA-TCCGAAAA-GAATGGGGATTAGT-ATGAGTATTCATGTTTGTCTTATTTAAGAGACA-
* * * ** ** * * * *
174882 GAACTTAGACTTTACAAAAATTGGTGGGAA-AAAGGCCTTTCATGCAGA-ACCAAAACATCAA--
125 -AACTTTGATTTTATAAAAAACGGTGAAAAGAAAAG-TTTTCTTGC-GACACCAAAGCATCAATG
* * * *** * * * ** *
174943 TATTGCATATCCTAATG-AGAAGACAACGTTTGTGG-TGCCTAATCCTGAAAAGGGTGGGGATTA
187 TCTTG--TATCCTATTGAAG-GGACGGTGTTTTTGGCT-CCCAATCTTGAAAAGAATGGAGATT-
* * * * * **
175006 G-CATGACTATTC-ATGCTTGTCTTA---AGGGAC-AAACTTTGATTCCAT--AAAA-AACGGTG
247 GTTACGA-GAATCGATGCTTGTCTTATTTAGGG-CTGAACTTTGATTTTATGGAAAATAA--G-G
* * * * * * * ** * * * * * * * *
175062 GAAAGGAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCGTGTATCCTATTAAAGGGATGGTGT
307 CAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT-GAGGAAT-GCG-
* * * * ** * * * * *
175127 TTTCTACT-CCCAATCTTGAAAA-GAATG-GAAATTGTTA-TGAGAATCGATGCTTGTCTTATTT
369 CTTATAGTGCCTAATC-CCAAAATGAATGAG-GATTATTACT-AGAATCCATGTTTGTCTCATTT
* * ** * * * **
175188 -AGGGGATGAACTTTGA-TTTA-ATGGAAAA-T-AAGGCAAAGAAGAGAATTCCTTGC-AAAAGA
431 GA-GGCATGAACTTAGACTTTACA---AAAATTGGGGGGAAA-AAG-GATTTTCTTGCGAAACTA
* * *
175247 AAATCATCAATATCATTTCTCCTAATGAG--G--AATGTGCTTATAGTGCCTAATCAC--AAAAG
490 AAA-CATCAATATCATGTATCCTAATGAGAAGACAATGT--TTATGGTGCCTAATC-CTGAAAA-
** * * * ** * * *
175306 GAATGAAGATCATTACTTGA--ATCCATGTTTGTCCCAATT--GAGGCATGAAC-TCAGACTT-T
550 GAATGGGGATTAGTA--TGACTATTCATGTTTGTCTTATTTAAGAGACA--AACTTTA-A-TTCT
* *
175365 A-CAAAAATTGGTGGGAAA--AAT
609 ATCAAAAA-CGGT-GGAAAGGAAA
* * * *** *
175386 GCTTTTCTTGCGA-AACAAAACATCAATATCGCATATCCTAATGAGAAGACTAAGTTTATTGTGC
1 GCTTTTCTTGCGACACCAAAGCATCAATGTCGTGCATCCTAATGAGAAGACTAAGTTTATGGTGC
* * * *
175450 CTAATCCTGAAAAGAATAGGGATTTGTATGAGTATTCATATTTGTCTTATATAAGAGACAAACTT
66 CTAATCC-GAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTT
* * * * * *
175515 TGATTCTATAAAAAACGG-GGAGAGAAAAGTTTTCTTGTGGCACCAAAGCATCAATGTCATGTAT
130 TGATTTTATAAAAAACGGTGAAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCTTGTAT
*
175579 CCTATTGAAGGGACGGTGTTTTTGGCTCCCAATTTTGAAAAGAATGGAGATTGTTACGAGAATCG
195 CCTATTGAAGGGACGGTGTTTTTGGCTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCG
* * *
175644 ATGCTTGCCTTATTTAGAGCTGAACTTTGATTTTATGGAATATAAGGCAAAGAAAAGATTTCCAT
260 ATGCTTGTCTTATTTAGGGCTGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCCAT
* * * *
175709 ACAAAAGAGAATCATCAATATCATTTCTGCTAATGAGGAATGCGCTTATAGTGCCTAATCCCAAA
325 GCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAATGCGCTTATAGTGCCTAATCCCAAA
* * * *
175774 ATGAATGAGGATCATTACTAGAATCCTTTTTTGTCCCATTTGAGGCATGAACTTAGACTTTACAA
390 ATGAATGAGGATTATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAA
* *
175839 AAATTGGGGAGAAAAAGGATTTTCTTGCGAAACTAAAACATCAATATCGTGTATCCTAATGAGAA
455 AAATTGGGGGGAAAAAGGATTTTCTTGCGAAACTAAAACATCAATATCATGTATCCTAATGAGAA
175904 GACAATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTT
520 GACAATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTT
*
175969 ATTTAAGAGACAAACTTTAATTCCATCAAAAACGGTGGAAAGGAAA
585 ATTTAAGAGACAAACTTTAATTCTATCAAAAACGGTGGAAAGGAAA
* * *
176015 GCTTTTCTTGCAACACCAAGGCCTCAATGTCGTGCATCCTAATGAGAAGACTAAGTTTATGGTGC
1 GCTTTTCTTGCGACACCAAAGCATCAATGTCGTGCATCCTAATGAGAAGACTAAGTTTATGGTGC
* *
176080 CTAATCCGAAAAATAATGGGGATTAGTATGAGTATTCATGTTTGTCTCATTTAAGAGACAAACTT
66 CTAATCCG-AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTT
* * *
176145 TGATTTTATCAAAAACGGTGAAAAGAAAAGTTTTCTTGTGACACCAAAGCATCAATGTCATGTAT
130 TGATTTTATAAAAAACGGTGAAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCTTGTAT
*
176210 CCTATTGAAGGGACGGTGTTTTTGGCTCCCAATTTTGAAAAGAATGGAGATTGTTACGAGAATCG
195 CCTATTGAAGGGACGGTGTTTTTGGCTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCG
* *
176275 ATGCTTGTCTTATTTAGAGCTGAACTTTGATTTTATGGAATATAAGGCAAAGAAAAGATTTCCAT
260 ATGCTTGTCTTATTTAGGGCTGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCCAT
* * * *
176340 ACAAAAGAGAATCATCAATATCATTTCTACTAATGAGGAATGCGCTTATAGTGCCTAATCCCAAA
325 GCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAATGCGCTTATAGTGCCTAATCCCAAA
* * * * * *
176405 ATGAATGAGGATCATTACTACAATCCTTTTTTATCCCATTTGAGGCATGAACTTAGACTTTACAA
390 ATGAATGAGGATTATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAA
176470 AAATTGGGGGGAAAAAGGATTTTCTTGCGAAACTAAAACATCAATATCATGTATCCTAATGAGAA
455 AAATTGGGGGGAAAAAGGATTTTCTTGCGAAACTAAAACATCAATATCATGTATCCTAATGAGAA
*
176535 GACAATGTTTATGGTGCCTAATCCTGAAAAGAGTGGGGATTAGTATGACTATTCATGTTTGTCTT
520 GACAATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTT
*
176600 ATTTAAGAGACAAACTTTAATTCCATCAAAAACGGTGGAAAGGAAA
585 ATTTAAGAGACAAACTTTAATTCTATCAAAAACGGTGGAAAGGAAA
*
176646 GCTTTTCTTGCGACACCAAAGCATCAATGTCGTGCATCCTAATGAGAATACTAAGTTTATGGTGC
1 GCTTTTCTTGCGACACCAAAGCATCAATGTCGTGCATCCTAATGAGAAGACTAAGTTTATGGTGC
176711 CTAATCCGAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTT
66 CTAATCCG-AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTT
* *
176776 TGATTTTATCAAAAACGGTGAAAAGAAAAGTTTTCTTGCGACACCAAAGTATCAATGTCTTGTAT
130 TGATTTTATAAAAAACGGTGAAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCTTGTAT
* * * *
176841 CCTATTGAAGGGACAGTGTTTTTGTCTCCCAATCTTGAAAAGAGTGGAGATTGTTATGAGAATCG
195 CCTATTGAAGGGACGGTGTTTTTGGCTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCG
* * * *
176906 ATGCTTGTCTTATTTAGGGGATGAACTTTGATTTTATGGAAAATAAAGCAAAGGAAAGATTTCTA
260 ATGCTTGTCTTATTTA-GGGCTGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCCA
* * * *
176971 TGCAAAAGAAAATCTTCAATATCATTTATCCTAGTGAAGAGAATGTGCTTATAGTGCCAAATCCC
324 TGCAAAAGAAAATCATCAATATCATTTATCCTAATG-AG-GAATGCGCTTATAGTGCCTAATCCC
* * * * * *
177036 AAAATTAATGACGATTATTGCTAGAATCCATGTTTGTCTAATTTAAAGCATGAACTTAGACTTTA
387 AAAATGAATGAGGATTATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTA
* *** ** * *** *
177101 CAAAAATTGGTGGGAAAGTTGCCTTTCTTGCGAAACCAAAACATCAATATTGCGTATCCTATTGA
452 CAAAAATTGGGGGGAAAAAGGATTTTCTTGCGAAACTAAAACATCAATATCATGTATCCTAATGA
* * * * * * * *
177166 GAAGACTACGTTTATGGTACCTAAACCTAAAAATAATGGGGATTTGTTTGACTATTCATGTTTGT
517 GAAGACAATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGT
* * * * *
177231 CATATTTAAGAGCCAAACCTTGATTTTCTATCAAAAACGGTGGAAAGAAAA
582 CTTATTTAAGAGACAAA-CTTTA-ATTCTATCAAAAACGGTGGAAAGGAAA
* * *
177282 GCTTTTCATGTGACACCAAAGCAACAATGTC
1 GCTTTTCTTGCGACACCAAAGCATCAATGTC
177313 AAGTATCTTA
Statistics
Matches: 3043, Mismatches: 595, Indels: 332
0.77 0.15 0.08
Matches are distributed among these distances:
620 45 0.01
621 7 0.00
622 100 0.03
623 290 0.10
624 65 0.02
625 44 0.01
626 149 0.05
627 176 0.06
628 119 0.04
629 358 0.12
630 364 0.12
631 979 0.32
632 87 0.03
633 3 0.00
634 201 0.07
635 4 0.00
636 52 0.02
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (630 bp):
GCTTTTCTTGCGACACCAAAGCATCAATGTCGTGCATCCTAATGAGAAGACTAAGTTTATGGTGC
CTAATCCGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTT
GATTTTATAAAAAACGGTGAAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCTTGTATC
CTATTGAAGGGACGGTGTTTTTGGCTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGA
TGCTTGTCTTATTTAGGGCTGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCCATG
CAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAATGCGCTTATAGTGCCTAATCCCAAAA
TGAATGAGGATTATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAA
AATTGGGGGGAAAAAGGATTTTCTTGCGAAACTAAAACATCAATATCATGTATCCTAATGAGAAG
ACAATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTA
TTTAAGAGACAAACTTTAATTCTATCAAAAACGGTGGAAAGGAAA
Found at i:179217 original size:472 final size:473
Alignment explanation
Indices: 177354--180111 Score: 3635
Period size: 472 Copynumber: 5.8 Consensus size: 473
177344 TTCCTAATCC
* * * *
177354 TGAACTTTGATTATAA-GGAAAAT-AGGTCAAAGAAAAGATTTTCATGTAAAGGAAAATCATCAA
1 TGAACTTTGATT-TAATGGAAAATAAGG-CAAAGAAAAGAATTCCATGCAAAAGAAAATCATCAA
* * * * * * * *
177417 TATCATTTATCCTAGTGAGGAGAATGTGCTTGTAGCGCCAAATCGCAAAATTAATGACA-ATCGT
64 TATCATTTCTCCTAATGA-G-GAATGTGCTTATAGTGCCTAATCACAAAATGAATGA-AGATCAT
* * * *
177481 TACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTATACTTTACAAAAATTGGTGGGAAAA
126 TACTAGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAA
** * * * * *
177546 TTGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATCAGAGGACTATGTTTATGGT
191 AGGCTTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTAAGTTTATTGT
* * *
177611 GCCTAATCCTGAAAAGAATGGGGATTTGTTTGACTATTCATGTTTGTCTTATTTAAGAGATAAAC
256 GCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAAC
* *
177676 TTTGATTCCATCAAAAATGGGGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCACCAATGTCA-G
321 TTTGATTCCATCAAAAACGGGGGAAAGAAAAG-TTTTCTTGCGACACCAAAGCATCAATGTCATG
* * * * * * * * * * *
177740 GATCCTATTG-ATGGGAATGTGCTTTTCG-TACCCAATCTAGGAAGGAATGGGGATTATTGCGAG
385 TATCCTATTGAAGGGGCA-GTGTTTTTGGCT-CCCAATCTTGAAAAGAATGGAGATTGTTACGAG
* *
177803 AATCGATGCTTGTCTTTTTTAAGGGA
448 AATCGATGCTTGTCTTATTTAGGGGA
* * ** * *
177829 TAAACTTTGATTTTAA-GGAAAAT-AGAGCAAAGAAAAGATTTTGATACAAAAGAAAATCATTAA
1 TGAACTTTGA-TTTAATGGAAAATAAG-GCAAAGAAAAGAATTCCATGCAAAAGAAAATCATCAA
* *
177892 TATCATTTCTCCTAATAAGGAGAATGTGCTTATAGTGCCTATTCACAAAATGAATGAAGATCATT
64 TATCATTTCTCCTAATGA-G-GAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATT
* * * * *
177957 ATTAGAATCTATATTTGTCTCATTTGAGGCATGAACTTAGACTTTAAAAAAATTGGTGGG-AAAA
127 ACTAGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAA
*
178021 GGCTTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACCAAGTTTA-TGTG
192 GGCTTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTAAGTTTATTGTG
* * * *
178085 CTTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTTAGAGACAAACT
257 CCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACT
** *
178150 TTGATTTTATCAAAAACGGGGGAAAGAAAAGTTTTCTTGCTGTCACCAAAGCATCAATGTCATGT
322 TTGATTCCATCAAAAACGGGGGAAAGAAAAGTTTTCTTGC-GACACCAAAGCATCAATGTCATGT
* * *
178215 ATCCTATTGAAGGGGCAATGTTTTTGGCTCCCAATCTTGAATAGAGTGGAGATTGTTACGAGAAT
386 ATCCTATTGAAGGGGCAGTGTTTTTGGCTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAAT
* *
178280 CGATGCCTGTCTTTTTTAGGGGA
451 CGATGCTTGTCTTATTTAGGGGA
* * * * *
178303 TGAACATTGATTTTATGGAAAATAAGGCGATGAAACG-ATATCCATGCAAAAGAAAATCATCAAT
1 TGAACTTTGATTTAATGGAAAATAAGGCAAAGAAAAGAAT-TCCATGCAAAAGAAAATCATCAAT
* * * * * *
178367 ATCATTTCTCCTAATAAGGAATATGCTTATAGTGCCAAATTATAAAATGAATGAAGATCATTGCT
65 ATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACT
* * * * **
178432 GGAATTCATGTTTATCTCATTTGAGGCATGAACTTAGACTGCACAAAAATTGGTGGGAAAAAGGC
130 AGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGGC
* * * * ** * *
178497 CTTTCATGCGGAACCAAAACATCAATATTGCATATCCTAATGAGAAGACTATGTTTATGGTGCCT
195 TTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTAAGTTTATTGTGCCT
* ** * * * *
178562 AATCCGGAAAAGGGTGGGGATTAGAATCACTATTCATGCTTGTCTTATTTAAGGGACAAACTTTG
260 AATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
* * *
178627 ATTCCATCAAAAACGGTGGAAAGGAAAGTTTTCTTGCGACACCAAAGCATCAATGTCAAGTATCC
325 ATTCCATCAAAAACGGGGGAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCC
* * * * *
178692 TATTAAAGGGGCGGTGTTTTCT-ACTCCCAATCTTGAAAAGAATGGAAATTGTTATGAGAATCGA
390 TATTGAAGGGGCAGTGTTTT-TGGCTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGA
*
178756 TACTTGTCTTATTTAGGGGA
454 TGCTTGTCTTATTTAGGGGA
178776 TGAACTTTGATTTAATGGAAAATAAGGCAAAGAAAAGAATTCCATGCAAAAGAAAATCATCAATA
1 TGAACTTTGATTTAATGGAAAATAAGGCAAAGAAAAGAATTCCATGCAAAAGAAAATCATCAATA
* * * *
178841 TCATTTGTCCTAATGAGGAATGTGCTTATAGTGCCCAATCACAAAATGAATGGAGATTATTACTA
66 TCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
* * * *
178906 GAATCCATGTTTGTCCCATTTGTGACATGAACTTAGACTTTACAAAAATTGGTTGGAAAAATGCT
131 GAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGGCT
* *
178971 TTTCTTGCGAAA-CAAAACATCAATATCATGTATCCTAATGAGAAGACTAAATTTATTGTGCCTA
196 TTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTAAGTTTATTGTGCCTA
* * * * *
179035 ATCCTGAAAAGAATAGGGATTAGTATGAGTCTTCATTTTTGTCTTATATAAGAGACAAACTTTGA
261 ATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* * *
179100 TTCTATAAAAAACGGGGGAAAGAAAAGTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCT
326 TTCCATCAAAAACGGGGGAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT
** * *
179165 ATTGAAGGGGCAGTGTTTTTGGCTCCCAATCTTGACTAGAGTGGAGATTGTTACAAGAATCGATG
391 ATTGAAGGGGCAGTGTTTTTGGCTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATG
* *
179230 CCTGTCTTCTTTAGGGGA
456 CTTGTCTTATTTAGGGGA
* * * *
179248 TGAACATTGATTTTATGGAAAATAAGGCAATGAAACG-ATATCCATGCAAAAGAAAATCATCAAT
1 TGAACTTTGATTTAATGGAAAATAAGGCAAAGAAAAGAAT-TCCATGCAAAAGAAAATCATCAAT
179312 ATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACT
65 ATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACT
* *
179377 AGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAAACTTTACAAAAATTAGG-AGGAAAAAGG
130 AGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAAATT-GGTGGGAAAAAGG
* *
179441 CTTTTCTTGCGAAACCAAAACATCAATATCGCGTATTCTAATGAGAAGACTAAGTTTATTGTGCC
194 CTTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTAAGTTTATTGTGCC
* * * *
179506 TAATCCTGAAAAGAATGGGGATTAGTGTGAGTATCCAAGTTTGTCTTATTTAAGAGACAAACTTT
259 TAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTT
* * * * *
179571 GATACTATAAAAAACGGGGGAAAGAAAAGTTTTCTTGTGACACCAAAGCATCAATGTCATGCATC
324 GATTCCATCAAAAACGGGGGAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
* * * ** *
179636 CTATTGAAGGGACGGTGTTTATACCTCCCAATCTTGAAAAAAATGGAGATTGTTACGAGAATCGA
389 CTATTGAAGGGGCAGTGTTTTTGGCTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGA
179701 TGCTTGTCTTATTTAGGGGA
454 TGCTTGTCTTATTTAGGGGA
* * *
179721 TGAACTTTGATTT-ATAGAAAATAAGGCAAAGAAAAGATTTCCAAGCAAAAGAAAATCATCAATA
1 TGAACTTTGATTTAATGGAAAATAAGGCAAAGAAAAGAATTCCATGCAAAAGAAAATCATCAATA
* * *
179785 TCATTTCTCCTAATGAGGAATGTGCTTAAAGTGCCTAATCCCAAAATTAATGAAGATCATTACTA
66 TCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
* * * * *
179850 GAATCCCTGTTTGTCCCATTTGAGGGATGAACATAGCCTTTACAAAAACTGGTGGGAAAAAGGCT
131 GAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGGCT
* *
179915 TTTCTTGCGAAACCAGAACATCAATATCGTGTATCCTAATGAGAAGAC-AATGTTTATAGTGCCT
196 TTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTAA-GTTTATTGTGCCT
* *
179979 AACCCTGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
260 AATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
* * * * *
180044 ATTCCATCAAAAATGGTGGAAA-AGAAAGCTTTTCTTACGACACCCAAGCATCAATGTCATGCAT
325 ATTCCATCAAAAACGGGGGAAAGA-AAAG-TTTTCTTGCGACACCAAAGCATCAATGTCATGTAT
180108 CCTA
388 CCTA
180112 AAGAGAAGAC
Statistics
Matches: 2002, Mismatches: 258, Indels: 48
0.87 0.11 0.02
Matches are distributed among these distances:
471 8 0.00
472 810 0.40
473 735 0.37
474 280 0.14
475 166 0.08
476 3 0.00
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.30
Consensus pattern (473 bp):
TGAACTTTGATTTAATGGAAAATAAGGCAAAGAAAAGAATTCCATGCAAAAGAAAATCATCAATA
TCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
GAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGGCT
TTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTAAGTTTATTGTGCCTA
ATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
TTCCATCAAAAACGGGGGAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT
ATTGAAGGGGCAGTGTTTTTGGCTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATG
CTTGTCTTATTTAGGGGA
Found at i:179296 original size:945 final size:945
Alignment explanation
Indices: 177354--180111 Score: 3897
Period size: 945 Copynumber: 2.9 Consensus size: 945
177344 TTCCTAATCC
* * * * * * * * *
177354 TGAACTTTGATTATAAGGAAAAT-AGGTCAAAGAAAAGATTTTCATGTAAAGGAAAATCATCAAT
1 TGAACATTGATTTTATGGAAAATAAGG-CAATGAAACGATATCCATGCAAAAGAAAATCATCAAT
* * * * * * * *
177418 ATCATTTATCCTAGTGAGGAGAATGTGCTTGTAGCGCCAAATCGCAAAATTAATGACA-ATCGTT
65 ATCATTTCTCCTAAT-AAG-GAATGTGCTTATAGTGCCAAATCACAAAATGAATGA-AGATCATT
* * * *
177482 ACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTATACTTTACAAAAATTGGTGGGAAAAT
127 ACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAAACTTTACAAAAATTGGTGGGAAAAA
* * * *
177547 TGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATCAGAGGACTATGTTTATGGTG
192 GGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTG
* * *
177612 CCTAATCCTGAAAAGAATGGGGATTTGTTTGACTATTCATGTTTGTCTTATTTAAGAGATAAACT
257 CCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACT
* * *
177677 TTGATTCCATCAAAAATGGGGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCACCAATGTC-AGG
322 TTGATTCCATCAAAAACGGGGGAAAGAAAAG-TTTTCTTGCGACACCAAAGCATCAATGTCAAGC
* ** * * * * * *
177741 ATCCTATTGATGGGAATGTGCTTTTCGTA--CCCAATCTAGGAAGGAATGGGGATTATTGCGAGA
386 ATCCTATTGAAGGGACGGTG-TTTTC-TACTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGA
* * *
177804 ATCGATGCTTGTCTTTTTTAAGGGATAAACTTTGATTTTAA-GGAAAAT-AGAGCAAAGAAAAGA
449 ATCGATGCTTGTCTTATTTAGGGGATGAACTTTGA-TTTAATGGAAAATAAG-GCAAAGAAAAGA
** * * *
177867 TTTTGATACAAAAGAAAATCATTAATATCATTTCTCCTAATAAGGAGAATGTGCTTATAGTGCCT
512 TTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGA-G-GAATGTGCTTATAGTGCCT
* * * * *
177932 ATTCACAAAATGAATGAAGATCATTATTAGAATCTATATTTGTCTCATTTGAGGCATGAACTTAG
575 AATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAG
* *
177997 ACTTTAAAAAAATTGG-TGGGAAAAGGCTTTTCTTGCGAAACCAAAACATCAATATCGTGTATCC
640 ACTTTACAAAAATTGGTTGGAAAAAGGCTTTTCTTGCGAAACCAAAACATCAATATCGTGTATCC
* * *
178061 TAATGAGAAGACCAAGTTTA-TGTGCTTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCAT
705 TAATGAGAAGA-CAAGTTTATTGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGAGTATTCAT
* *
178125 GTTTGTCTTATTTTAGAGACAAACTTTGATTTTATCAAAAACGGGGGAAAGAAAAGTTTTCTTGC
769 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGGGGAAAGAAAAGTTTTCTTG-
*
178190 TGTCACCAAAGCATCAATGTCATGTATCCTATTGAAGGGGCAATGTTTTTGGCTCCCAATCTTGA
833 TGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGGCAATGTTTTTGGCTCCCAATCTTGA
* *
178255 ATAGAGTGGAGATTGTTACGAGAATCGATGCCTGTCTTTTTTAGGGGA
898 ATAGAGTGGAGATTGTTACAAGAATCGATGCCTGTCTTCTTTAGGGGA
*
178303 TGAACATTGATTTTATGGAAAATAAGGCGATGAAACGATATCCATGCAAAAGAAAATCATCAATA
1 TGAACATTGATTTTATGGAAAATAAGGCAATGAAACGATATCCATGCAAAAGAAAATCATCAATA
* * * * *
178368 TCATTTCTCCTAATAAGGAATATGCTTATAGTGCCAAATTATAAAATGAATGAAGATCATTGCTG
66 TCATTTCTCCTAATAAGGAATGTGCTTATAGTGCCAAATCACAAAATGAATGAAGATCATTACTA
* * * **
178433 GAATTCATGTTTATCTCATTTGAGGCATGAACTTAGACTGCACAAAAATTGGTGGGAAAAAGGCC
131 GAATCCATGTTTGTCTCATTTGAGGCATGAACTTAAACTTTACAAAAATTGGTGGGAAAAAGGCC
* * * *
178498 TTTCATGCGGAACCAAAACATCAATATTGCATATCCTAATGAGAAGACTATGTTTATGGTGCCTA
196 TTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTA
* ** * * * *
178563 ATCCGGAAAAGGGTGGGGATTAGAATCACTATTCATGCTTGTCTTATTTAAGGGACAAACTTTGA
261 ATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* * *
178628 TTCCATCAAAAACGGTGGAAAGGAAAGTTTTCTTGCGACACCAAAGCATCAATGTCAAGTATCCT
326 TTCCATCAAAAACGGGGGAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCAAGCATCCT
* * * * *
178693 ATTAAAGGGGCGGTGTTTTCTACTCCCAATCTTGAAAAGAATGGAAATTGTTATGAGAATCGATA
391 ATTGAAGGGACGGTGTTTTCTACTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATG
*
178758 CTTGTCTTATTTAGGGGATGAACTTTGATTTAATGGAAAATAAGGCAAAGAAAAGAATTCCATGC
456 CTTGTCTTATTTAGGGGATGAACTTTGATTTAATGGAAAATAAGGCAAAGAAAAGATTTCCATGC
* *
178823 AAAAGAAAATCATCAATATCATTTGTCCTAATGAGGAATGTGCTTATAGTGCCCAATCACAAAAT
521 AAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAATCACAAAAT
* * * *
178888 GAATGGAGATTATTACTAGAATCCATGTTTGTCCCATTTGTGACATGAACTTAGACTTTACAAAA
586 GAATGAAGATCATTACTAGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAA
* *
178953 ATTGGTTGGAAAAATGCTTTTCTTGCGAAA-CAAAACATCAATATCATGTATCCTAATGAGAAGA
651 ATTGGTTGGAAAAAGGCTTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGA
* * *
179017 CTAAATTTATTGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGAGTCTTCATTTTTGTCTTAT
716 C-AAGTTTATTGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTAT
* *
179082 ATAAGAGACAAACTTTGATTCTATAAAAAACGGGGGAAAGAAAAGTTTTCTTGTGACACCAAAGC
780 TTAAGAGACAAACTTTGATTCTATCAAAAACGGGGGAAAGAAAAGTTTTCTTGTGACACCAAAGC
* *
179147 ATCAATGTCATGTATCCTATTGAAGGGGCAGTGTTTTTGGCTCCCAATCTTGACTAGAGTGGAGA
845 ATCAATGTCATGTATCCTATTGAAGGGGCAATGTTTTTGGCTCCCAATCTTGAATAGAGTGGAGA
179212 TTGTTACAAGAATCGATGCCTGTCTTCTTTAGGGGA
910 TTGTTACAAGAATCGATGCCTGTCTTCTTTAGGGGA
179248 TGAACATTGATTTTATGGAAAATAAGGCAATGAAACGATATCCATGCAAAAGAAAATCATCAATA
1 TGAACATTGATTTTATGGAAAATAAGGCAATGAAACGATATCCATGCAAAAGAAAATCATCAATA
* *
179313 TCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
66 TCATTTCTCCTAATAAGGAATGTGCTTATAGTGCCAAATCACAAAATGAATGAAGATCATTACTA
* *
179378 GAATCCATGTTTGTCCCATTTGAGGCATGAACTTAAACTTTACAAAAATTAGG-AGGAAAAAGGC
131 GAATCCATGTTTGTCTCATTTGAGGCATGAACTTAAACTTTACAAAAATT-GGTGGGAAAAAGGC
* * * *
179442 TTTTCTTGCGAAACCAAAACATCAATATCGCGTATTCTAATGAGAAGACTAAGTTTATTGTGCCT
195 CTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCT
* * * *
179507 AATCCTGAAAAGAATGGGGATTAGTGTGAGTATCCAAGTTTGTCTTATTTAAGAGACAAACTTTG
260 AATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
* * * * *
179572 ATACTATAAAAAACGGGGGAAAGAAAAGTTTTCTTGTGACACCAAAGCATCAATGTCATGCATCC
325 ATTCCATCAAAAACGGGGGAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCAAGCATCC
* *
179637 TATTGAAGGGACGGTG-TTTATACCTCCCAATCTTGAAAAAAATGGAGATTGTTACGAGAATCGA
390 TATTGAAGGGACGGTGTTTTCTA-CTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGA
* *
179701 TGCTTGTCTTATTTAGGGGATGAACTTTGATTT-ATAGAAAATAAGGCAAAGAAAAGATTTCCAA
454 TGCTTGTCTTATTTAGGGGATGAACTTTGATTTAATGGAAAATAAGGCAAAGAAAAGATTTCCAT
* *
179765 GCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTAAAGTGCCTAATCCCAAA
519 GCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAATCACAAA
* * * * *
179830 ATTAATGAAGATCATTACTAGAATCCCTGTTTGTCCCATTTGAGGGATGAACATAGCCTTTACAA
584 ATGAATGAAGATCATTACTAGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGACTTTACAA
* * *
179895 AAACTGGTGGGAAAAAGGCTTTTCTTGCGAAACCAGAACATCAATATCGTGTATCCTAATGAGAA
649 AAATTGGTTGGAAAAAGGCTTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAA
* * *
179960 GACAATGTTTATAGTGCCTAACCCTGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTCTT
714 GACAA-GTTTATTGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTT
* * * ** *
180025 ATTTAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAA-AGAAAGCTTTTCTTACGACACCC
778 ATTTAAGAGACAAACTTTGATTCTATCAAAAACGGGGGAAAGA-AAAG-TTTTCTTGTGACACCA
*
180089 AAGCATCAATGTCATGCATCCTA
841 AAGCATCAATGTCATGTATCCTA
180112 AAGAGAAGAC
Statistics
Matches: 1601, Mismatches: 192, Indels: 35
0.88 0.11 0.02
Matches are distributed among these distances:
944 183 0.11
945 792 0.49
946 198 0.12
947 358 0.22
948 4 0.00
949 63 0.04
950 3 0.00
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.30
Consensus pattern (945 bp):
TGAACATTGATTTTATGGAAAATAAGGCAATGAAACGATATCCATGCAAAAGAAAATCATCAATA
TCATTTCTCCTAATAAGGAATGTGCTTATAGTGCCAAATCACAAAATGAATGAAGATCATTACTA
GAATCCATGTTTGTCTCATTTGAGGCATGAACTTAAACTTTACAAAAATTGGTGGGAAAAAGGCC
TTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTA
ATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
TTCCATCAAAAACGGGGGAAAGAAAAGTTTTCTTGCGACACCAAAGCATCAATGTCAAGCATCCT
ATTGAAGGGACGGTGTTTTCTACTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATG
CTTGTCTTATTTAGGGGATGAACTTTGATTTAATGGAAAATAAGGCAAAGAAAAGATTTCCATGC
AAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAATCACAAAAT
GAATGAAGATCATTACTAGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAA
ATTGGTTGGAAAAAGGCTTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGA
CAAGTTTATTGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTATT
TAAGAGACAAACTTTGATTCTATCAAAAACGGGGGAAAGAAAAGTTTTCTTGTGACACCAAAGCA
TCAATGTCATGTATCCTATTGAAGGGGCAATGTTTTTGGCTCCCAATCTTGAATAGAGTGGAGAT
TGTTACAAGAATCGATGCCTGTCTTCTTTAGGGGA
Found at i:179604 original size:158 final size:159
Alignment explanation
Indices: 177485--180743 Score: 840
Period size: 158 Copynumber: 20.7 Consensus size: 159
177475 AATCGTTACT
* * *
177485 AGAATCCATGTTTGTCTCATTTAAG-GCACGAAC-TT-ATACTTTACAAAAATTGGTGGG-AA-A
1 AGAATCCATGTTTGTCTTATTTAAGAG-ACAAACTTTGATACTATA-AAAAA-TGG-GGGAAAGA
** * ** * * * *
177545 ATTGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATCAGAGGACTATGTTTATGG
62 AAAGCTTTTCTTGCGAAACCAAAACATCAATATCACGTATCCTAATGAGAAGACTAAGTTTATTG
* * *
177610 TGCCTAATCCTGAAAAGAATGGGGATTTGTTTG
127 TGCCTAATCCTGAAAAGAATGGAGATTAGTATG
** * * * * *
177643 ACTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCCATCAAAAATGGGGGAAAGAAAAG
1 AGAATCCATGTTTGTCTTATTTAAGAGACAAACTTTGATACTATAAAAAATGGGGGAAAGAAAAG
* * * * * * * * ** * *
177708 CTTTTCTTGCGACACCAAAGCACCAATGTCA-GGATCCTATTGATG-GGAATGTGCTTT-TCGTA
66 CTTTTCTTGCGAAACCAAAACATCAATATCACGTATCCTAATGA-GAAGACTAAG-TTTATTGTG
* * * * * **
177770 CCCAAT-CTAGGAAGGAATGGGGATTATTGCG
129 CCTAATCCT-GAAAAGAATGGAGATTAGTATG
* * * * * * * * *
177801 AGAATCGATGCTTGTCTTTTTTAAGGGATAAACTTTGAT--TTTAAGGAAAATAGAGCAAAGAAA
1 AGAATCCATGTTTGTCTTATTTAAGAGACAAACTTTGATACTATAA--AAAATGGGGGAAAGAAA
* ** * ** * ** * * * * ** * *
177864 AGATTTTGATAC-AAAAGAAAATCATTAATATCATTTCTCCTAATAAGGAGAATGTGCTTATAGT
64 AGCTTTTCTTGCGAAACCAAAA-CATCAATATCACGTATCCTAATGAGAAGACTAAGTTTATTGT
* * * * *
177928 GCCTATTCAC--AAAATGAATGAAGATCATTATT
128 GCCTAATC-CTGAAAA-GAATGGAGATTAGTATG
* * * * * *
177960 AGAATCTATATTTGTCTCATTT--GAGGCATGAAC-TT-AGACTTTAAAAAAATTGGTGGG--A-
1 AGAATCCATGTTTGTCTTATTTAAGAGACA--AACTTTGATACTAT-AAAAAA-TGG-GGGAAAG
* ** *
178018 AAAGGCTTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACCAAGTTTA-T
61 AAAAGCTTTTCTTGCGAAACCAAAACATCAATATCACGTATCCTAATGAGAAGACTAAGTTTATT
* * *
178082 GTGCTTAATCCTAAAAAGAATGGGGATTAGTATG
126 GTGCCTAATCCTGAAAAGAATGGAGATTAGTATG
* * * ** * *
178116 AGTATTCATGTTTGTCTTATTTTAGAGACAAACTTTGATTTTATCAAAAACGGGGGAAAGAAAAG
1 AGAATCCATGTTTGTCTTATTTAAGAGACAAACTTTGATACTATAAAAAATGGGGGAAAGAAAAG
** * * * * * *
178181 -TTTTCTTGCTGTCACCAAAGCATCAATGTCATGTATCCTATTGA-AGGGGC-AATGTTT-TTG-
66 CTTTTCTTGC-GAAACCAAAACATCAATATCACGTATCCTAATGAGA-AGACTAA-GTTTATTGT
* * * * *
178241 GCTCCCAATCTTGAATAGAGTGGAGATT-GTTACG
128 G--CCTAATCCTGAAAAGAATGGAGATTAG-TATG
* ** * * * ** * ** ** * * * *
178275 AGAATCGATGCCTGTCTTTTTTAGGGGATGAACATTGATTTTATGGAAAATAAGGCG-ATGAAAC
1 AGAATCCATGTTTGTCTTATTTAAGAGACAAACTTTGATACTATAAAAAAT-GGGGGAAAGAAAA
* * * * ** ** * * * * * *
178339 GATATCCATGC-AAAAGAAAATCATCAATATCATTTCTCCTAAT-A-AGGAATATGCTTATAGTG
65 GCTTTTCTTGCGAAACCAAAA-CATCAATATCACGTATCCTAATGAGAAGACTAAGTTTATTGTG
* ** * * * *
178401 CCAAATTAT-AAAATGAATGAAGATCATTGCTG
129 CCTAATCCTGAAAA-GAATGGAGATTAGT-ATG
* * * * * * * *
178433 -GAATTCATGTTTATCTCATTT--GAGGCATGAACTTAGACTGC-ACAAAAATTGGTGGG-AA-A
1 AGAATCCATGTTTGTCTTATTTAAGAGACA--AACTTTGA-TACTATAAAAAATGG-GGGAAAGA
* * * * ** * * *
178492 AAGGCCTTTCATGCGGAACCAAAACATCAATATTGCATATCCTAATGAGAAGACTATGTTTATGG
62 AAAGCTTTTCTTGCGAAACCAAAACATCAATATCACGTATCCTAATGAGAAGACTAAGTTTATTG
* ** * * *
178557 TGCCTAATCCGGAAAAGGGTGGGGATTAGAATC
127 TGCCTAATCCTGAAAAGAATGGAGATTAGTATG
** * * * * * * * * *
178590 ACTATTCATGCTTGTCTTATTTAAGGGACAAACTTTGATTCCATCAAAAACGGTGGAAAGGAAAG
1 AGAATCCATGTTTGTCTTATTTAAGAGACAAACTTTGATACTATAAAAAATGGGGGAAAGAAAAG
* * * * * * *** *
178655 -TTTTCTTGCGACACCAAAGCATCAATGTCAAGTATCCT-ATTA-AAGGGGCGGTGTTT-TCTAC
66 CTTTTCTTGCGAAACCAAAACATCAATATCACGTATCCTAATGAGAA--GACTAAGTTTAT-T-G
* * *
178716 T-CCCAATCTTGAAAAGAATGGAAATT-GTTATG
127 TGCCTAATCCTGAAAAGAATGGAGATTAG-TATG
* ** * * ** * ** ** *
178748 AGAATCGATACTTGTCTTATTTAGGGGATGAACTTTGAT-TTAATGGAAAATAAGGCAAAGAAAA
1 AGAATCCATGTTTGTCTTATTTAAGAGACAAACTTTGATACT-ATAAAAAATGGGGGAAAGAAAA
** * * ** ** * * ** * *
178812 GAATTCCATGC-AAAAGAAAATCATCAATATCATTTGTCCTAATGAG--GAATGTGCTTATAGTG
65 GCTTTTCTTGCGAAACCAAAA-CATCAATATCACGTATCCTAATGAGAAGACTAAGTTTATTGTG
* *
178874 CCCAATCAC--AAAATGAATGGAGATTATTACT-
129 CCTAATC-CTGAAAA-GAATGGAGATTAGTA-TG
** * * * *
178905 AGAATCCATGTTTGTCCCATTT--GTGACATGAAC-TT-AGACTTTACAAAAATTGGTTGG-AA-
1 AGAATCCATGTTTGTCTTATTTAAGAGACA--AACTTTGATACTATA-AAAAA-TGG-GGGAAAG
* * *
178964 AAATGCTTTTCTTGCGAAA-CAAAACATCAATATCATGTATCCTAATGAGAAGACTAAATTTATT
61 AAAAGCTTTTCTTGCGAAACCAAAACATCAATATCACGTATCCTAATGAGAAGACTAAGTTTATT
179028 GTGCCTAATCCTGAAAAGAATAGG-GATTAGTATG
126 GTGCCTAATCCTGAAAAGAAT-GGAGATTAGTATG
** * * * * *
179062 AGTCTTCATTTTTGTCTTATATAAGAGACAAACTTTGATTCTATAAAAAACGGGGGAAAGAAAAG
1 AGAATCCATGTTTGTCTTATTTAAGAGACAAACTTTGATACTATAAAAAATGGGGGAAAGAAAAG
* * * * * * * * *
179127 -TTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTATTGA-AGGGGC--AGTGTTTTTG-G
66 CTTTTCTTGCGAAACCAAAACATCAATATCACGTATCCTAATGAGA-AGACTAAGT-TTATTGTG
* * ** * **
179187 CTCCCAATCTTGACTAGAGTGGAGATT-GTTACA
129 --CCTAATCCTGAAAAGAATGGAGATTAG-TATG
* ** * * * ** * ** ** ** * * *
179220 AGAATCGATGCCTGTCTTCTTTAGGGGATGAACATTGATTTTATGGAAAATAAGGCAATGAAACG
1 AGAATCCATGTTTGTCTTATTTAAGAGACAAACTTTGATACTATAAAAAATGGGGGAAAGAAAAG
* * * * ** ** * * ** * *
179285 ATATCCATGC-AAAAGAAAATCATCAATATCATTTCTCCTAATGAG--GAATGTGCTTATAGTGC
66 CTTTTCTTGCGAAACCAAAA-CATCAATATCACGTATCCTAATGAGAAGACTAAGTTTATTGTGC
* * *
179347 CTAATCAC--AAAATGAATGAAGATCATTACT-
130 CTAATC-CTGAAAA-GAATGGAGATTAGTA-TG
** * * * *
179377 AGAATCCATGTTTGTCCCATTT--GAGGCATGAAC-TT-AAACTTTACAAAAATTAGGAGG-AA-
1 AGAATCCATGTTTGTCTTATTTAAGAGACA--AACTTTGATACTATA-AAAAA-T-GGGGGAAAG
* * *
179436 AAAGGCTTTTCTTGCGAAACCAAAACATCAATATCGCGTATTCTAATGAGAAGACTAAGTTTATT
61 AAAAGCTTTTCTTGCGAAACCAAAACATCAATATCACGTATCCTAATGAGAAGACTAAGTTTATT
* *
179501 GTGCCTAATCCTGAAAAGAATGGGGATTAGTGTG
126 GTGCCTAATCCTGAAAAGAATGGAGATTAGTATG
* * *
179535 AGTATCCAAGTTTGTCTTATTTAAGAGACAAACTTTGATACTATAAAAAACGGGGGAAAGAAAAG
1 AGAATCCATGTTTGTCTTATTTAAGAGACAAACTTTGATACTATAAAAAATGGGGGAAAGAAAAG
* * * * * * * * *** **
179600 -TTTTCTTGTGACACCAAAGCATCAATGTCATGCATCCTATTGA-AGGGACGGTGTTTATACCT-
66 CTTTTCTTGCGAAACCAAAACATCAATATCACGTATCCTAATGAGA-AGACTAAGTTTAT-TGTG
* * * *
179662 CCCAATCTTGAAAAAAATGGAGATT-GTTACG
129 CCTAATCCTGAAAAGAATGGAGATTAG-TATG
* * * * ** * * ** *
179693 AGAATCGATGCTTGTCTTATTTAGGGGATGAACTTTGAT-TTATAGAAAATAAGGCAAAGAAAAG
1 AGAATCCATGTTTGTCTTATTTAAGAGACAAACTTTGATACTATAAAAAATGGGGGAAAGAAAAG
* * ** ** ** * * ** * **
179757 ATTTCCAAGC-AAAAGAAAATCATCAATATCATTTCTCCTAATGAG--GAATGTGCTTAAAGTGC
66 CTTTTCTTGCGAAACCAAAA-CATCAATATCACGTATCCTAATGAGAAGACTAAGTTTATTGTGC
* * * * *
179819 CTAATCC-CAAAATTAATGAAGATCATTACT-
130 CTAATCCTGAAAA-GAATGGAGATTAGTA-TG
* ** * * ** * ** *
179849 AGAATCCCTGTTTGTCCCATTTGAGGGATGAAC-AT-AGCCTTTACAAAAACTGGTGGG-AA-AA
1 AGAATCCATGTTTGTCTTATTTAAGAGACAAACTTTGATACTATA-AAAAA-TGG-GGGAAAGAA
* * ** *
179910 AGGCTTTTCTTGCGAAACCAGAACATCAATATCGTGTATCCTAATGAGAAGAC-AATGTTTATAG
63 AAGCTTTTCTTGCGAAACCAAAACATCAATATCACGTATCCTAATGAGAAGACTAA-GTTTATTG
*
179974 TGCCTAACCCTGAAAAGAATAGG-GATTAGTATG
127 TGCCTAATCCTGAAAAGAAT-GGAGATTAGTATG
** * * * * *
180007 ACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAA-AGAAA
1 AGAATCCATGTTTGTCTTATTTAAGAGACAAACTTTGATACTATAAAAAATGGGGGAAAGA-AAA
* * * * * * * * *
180071 GCTTTTCTTACGACACCCAAGCATCAATGTCATGCATCCTAAAGAGAAGACTAAGTTTATGGTGC
65 GCTTTTCTTGCGAAACCAAAACATCAATATCACGTATCCTAATGAGAAGACTAAGTTTATTGTGC
* *
180136 CTAATCCGGAAAAGAATGGGGATTAGTATG
130 CTAATCCTGAAAAGAATGGAGATTAGTATG
* * * ** *
180166 AGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCCAAAATGGGGAAAAG-AAAG
1 AGAATCCATGTTTGTCTTATTTAAGAGACAAACTTTGATACTATAAAAAATGGGGGAAAGAAAAG
* * * * * * * * ***
180230 GTTTTCTTACGACACCAAAGCATCAATGTC-CTGTATCCTATTGA-AGGGGCGGTGTTT-TTG-G
66 CTTTTCTTGCGAAACCAAAACATCAATATCAC-GTATCCTAATGAGA-AGACTAAGTTTATTGTG
* * *
180291 CTCCCAATCTTGAAAAGAGTGGAGATT-GTTATG
129 --CCTAATCCTGAAAAGAATGGAGATTAG-TATG
* * ** ** * ** * *
180324 AGAATCGATGCTTGTCTTATTT-AGAGGATGAACTTTGATTTTATGAAAAATAAGGCAAAGAAAC
1 AGAATCCATGTTTGTCTTATTTAAGA-GACAAACTTTGATACTATAAAAAATGGGGGAAAGAAAA
* * * * ** ** * * * * ** * * *
180388 GATATCCATGC-AAAAGAAAATCATCAATATCATTTCTCTTAGTGAG--GAATGTGCTTATGGAG
65 GCTTTTCTTGCGAAACCAAAA-CATCAATATCACGTATCCTAATGAGAAGACTAAGTTTATTGTG
* * *
180450 CCTAATCAC--AAAATGAATGAAGATCATTACT-
129 CCTAATC-CTGAAAA-GAATGGAGATTAGTA-TG
** * * * * * * *
180481 AGAATCCATGTTTGTCCCATTTGAG-GCATAAACTTAGACATTACAAAAATTGGTGGG-AA-AAA
1 AGAATCCATGTTTGTCTTATTTAAGAG-ACAAACTTTGATACTATAAAAAATGG-GGGAAAGAAA
* * * *
180543 TGCTTTTCTTGCGAAAACAAAACATCAATATCGCGTATCCTAATGAGTAGACTAAGTTTATTGTG
64 AGCTTTTCTTGCGAAACCAAAACATCAATATCACGTATCCTAATGAGAAGACTAAGTTTATTGTG
* *
180608 CCTAATCCTGAAAAAGAATGGGGATTAGTATA
129 CCTAATCCTG-AAAAGAATGGAGATTAGTATG
* * *
180640 AGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATACTATAAAAAACGGGGGAAAGAAAAG
1 AGAATCCATGTTTGTCTTATTTAAGAGACAAACTTTGATACTATAAAAAATGGGGGAAAGAAAAG
* * * *
180705 -TTTTCTTGTGACAA-CAAAGCATCAATGTCATGTATCCTA
66 CTTTTCTTGCGA-AACCAAAACATCAATATCACGTATCCTA
180744 TTGAAGGGAA
Statistics
Matches: 2180, Mismatches: 730, Indels: 381
0.66 0.22 0.12
Matches are distributed among these distances:
154 1 0.00
155 48 0.02
156 269 0.12
157 425 0.19
158 872 0.40
159 514 0.24
160 50 0.02
161 1 0.00
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (159 bp):
AGAATCCATGTTTGTCTTATTTAAGAGACAAACTTTGATACTATAAAAAATGGGGGAAAGAAAAG
CTTTTCTTGCGAAACCAAAACATCAATATCACGTATCCTAATGAGAAGACTAAGTTTATTGTGCC
TAATCCTGAAAAGAATGGAGATTAGTATG
Found at i:180181 original size:159 final size:159
Alignment explanation
Indices: 179892--180269 Score: 530
Period size: 159 Copynumber: 2.4 Consensus size: 159
179882 ATAGCCTTTA
* * * * * * * *
179892 CAAAAACTGGTGGGAAA-AAGGCTTTTCTTGCGA-AACCAGAACATCAATATCGTGTATCCTAAT
1 CAAAAA-TGGTGGAAAAGAAAGCTTTTCTTACGACACCCA-AGCATCAATGTCATGTATCCTAAA
*
179955 GAGAAGACAATGTTTATAGTGCCTAACCCTGAAAAGAATAGGGATTAGTATGACTATTCATGTTT
64 GAGAAGACAATGTTTATAGTGCCTAACCCGGAAAAGAATAGGGATTAGTATGACTATTCATGTTT
180020 GTCTTATTTAAGAGACAAACTTTGATTCCAT
129 GTCTTATTTAAGAGACAAACTTTGATTCCAT
*
180051 CAAAAATGGTGGAAAAGAAAGCTTTTCTTACGACACCCAAGCATCAATGTCATGCATCCTAAAGA
1 CAAAAATGGTGGAAAAGAAAGCTTTTCTTACGACACCCAAGCATCAATGTCATGTATCCTAAAGA
* * * *
180116 GAAGACTAA-GTTTATGGTGCCTAATCCGGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTG
66 GAAGAC-AATGTTTATAGTGCCTAACCCGGAAAAGAATAGGGATTAGTATGACTATTCATGTTTG
*
180180 TCTTATTTAAGAGACAAACTTTGATTCTAT
130 TCTTATTTAAGAGACAAACTTTGATTCCAT
* * * *
180210 CCAAAATGG-GGAAAAGAAAGGTTTTCTTACGACACCAAAGCATCAATGTCCTGTATCCTA
1 CAAAAATGGTGGAAAAGAAAGCTTTTCTTACGACACCCAAGCATCAATGTCATGTATCCTA
180270 TTGAAGGGGC
Statistics
Matches: 196, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
158 56 0.29
159 134 0.68
160 6 0.03
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.29
Consensus pattern (159 bp):
CAAAAATGGTGGAAAAGAAAGCTTTTCTTACGACACCCAAGCATCAATGTCATGTATCCTAAAGA
GAAGACAATGTTTATAGTGCCTAACCCGGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGT
CTTATTTAAGAGACAAACTTTGATTCCAT
Found at i:180729 original size:632 final size:631
Alignment explanation
Indices: 179478--180743 Score: 1910
Period size: 632 Copynumber: 2.0 Consensus size: 631
179468 ATCGCGTATT
* * * *
179478 CTAATGAGAAGACTAAGTTTATTGTGCCTAATCCTGAAAAGAATGGGGATTAGTGTGAGTATCCA
1 CTAAAGAGAAGACTAAGTTTATGGTGCCTAATCCGGAAAAGAATGGGGATTAGTATGAGTATCCA
* *
179543 AGTTTGTCTTATTTAAGAGACAAACTTTGATACTATAAAAAACGGGGGAAAGAAAAGTTTTCTTG
66 AGTTTGTCTTATTTAAGAGACAAACTTTGATACTATAAAAAACGGGGAAAAGAAAAGTTTTCTTA
*
179608 TGACACCAAAGCATCAATGTCATGCATCCTATTGAAGGGACGGTGTTTATACCTCCCAATCTTGA
131 CGACACCAAAGCATCAATGTCATGCATCCTATTGAAGGGACGGTGTTTATACCTCCCAATCTTGA
*
179673 AAAAAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAGGGGATGAACTTTGATTTATAG
196 AAAAAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAGAGGATGAACTTTGATTTATAG
*
179738 AAAATAAGGCAAAGAAAAGATTTCCAAGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGG
261 AAAATAAGGCAAAGAAAAGATATCCAAGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGG
* * * *
179803 AATGTGCTTAAAGTGCCTAATCCCAAAATTAATGAAGATCATTACTAGAATCCCTGTTTGTCCCA
326 AATGTGCTTAAAGAGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCCCA
* * * * * *
179868 TTTGAGGGATGAACATAGCCTTTACAAAAACTGGTGGGAAAAAGGCTTTTCTTGCGAAACCAGAA
391 TTTGAGGCATAAACATAGACATTACAAAAACTGGTGGGAAAAAGGCTTTTCTTGCGAAAACAAAA
*
179933 CATCAATATCGTGTATCCTAATGAGAAGACAATGTTTATAGTGCCTAACCCTGAAAAGAATAGGG
456 CATCAATATCGCGTATCCTAATGAGAAGACAATGTTTATAGTGCCTAACCCTGAAAAGAATAGGG
* * * * *
179998 ATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGGTGG
521 ATTAGTATAACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATACCATAAAAAACGGGGG
* *
180063 AAAAGAAAGCTTTTCTTACGACACCCAAGCATCAATGTCATGCATC
586 AAAAGAAAGCTTTTCTTACGACAACAAAGCATCAATGTCATGCATC
*
180109 CTAAAGAGAAGACTAAGTTTATGGTGCCTAATCCGGAAAAGAATGGGGATTAGTATGAGTATTCA
1 CTAAAGAGAAGACTAAGTTTATGGTGCCTAATCCGGAAAAGAATGGGGATTAGTATGAGTATCCA
* * ** * *
180174 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCCAAAATGGGGAAAAGAAAGGTTTTCTTA
66 AGTTTGTCTTATTTAAGAGACAAACTTTGATACTATAAAAAACGGGGAAAAGAAAAGTTTTCTTA
* * * * **
180239 CGACACCAAAGCATCAATGTCCTGTATCCTATTGAAGGGGCGGTGTTTTTGGCTCCCAATCTTGA
131 CGACACCAAAGCATCAATGTCATGCATCCTATTGAAGGGACGGTGTTTATACCTCCCAATCTTGA
* * *
180304 AAAGAGTGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAGAGGATGAACTTTGATTT-TAT
196 AAAAAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAGAGGATGAACTTTGATTTATA-
* * * *
180368 GAAAAATAAGGCAAAGAAACGATATCCATGCAAAAGAAAATCATCAATATCATTTCTCTTAGTGA
260 G-AAAATAAGGCAAAGAAAAGATATCCAAGCAAAAGAAAATCATCAATATCATTTCTCCTAATGA
**
180433 GGAATGTGCTTATGGAGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCC
324 GGAATGTGCTTAAAGAGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCC
* * *
180498 CATTTGAGGCATAAACTTAGACATTACAAAAATTGGTGGGAAAAATGCTTTTCTTGCGAAAACAA
389 CATTTGAGGCATAAACATAGACATTACAAAAACTGGTGGGAAAAAGGCTTTTCTTGCGAAAACAA
* * *
180563 AACATCAATATCGCGTATCCTAATGAGTAGACTAA-GTTTATTGTGCCTAATCCTGAAAAAGAAT
454 AACATCAATATCGCGTATCCTAATGAGAAGAC-AATGTTTATAGTGCCTAACCCTG-AAAAGAAT
* * *
180627 GGGGATTAGTATAAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATACTATAAAAAACG
517 AGGGATTAGTATAACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATACCATAAAAAACG
** *
180692 GGGG-AAAGAAAAG-TTTTCTTGTGACAACAAAGCATCAATGTCATGTATC
582 GGGGAAAAG-AAAGCTTTTCTTACGACAACAAAGCATCAATGTCATGCATC
180741 CTA
1 CTA
180744 TTGAAGGGAA
Statistics
Matches: 569, Mismatches: 61, Indels: 9
0.89 0.10 0.01
Matches are distributed among these distances:
630 2 0.00
631 233 0.41
632 259 0.46
633 75 0.13
ACGTcount: A:0.36, C:0.15, G:0.20, T:0.30
Consensus pattern (631 bp):
CTAAAGAGAAGACTAAGTTTATGGTGCCTAATCCGGAAAAGAATGGGGATTAGTATGAGTATCCA
AGTTTGTCTTATTTAAGAGACAAACTTTGATACTATAAAAAACGGGGAAAAGAAAAGTTTTCTTA
CGACACCAAAGCATCAATGTCATGCATCCTATTGAAGGGACGGTGTTTATACCTCCCAATCTTGA
AAAAAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAGAGGATGAACTTTGATTTATAG
AAAATAAGGCAAAGAAAAGATATCCAAGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGG
AATGTGCTTAAAGAGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCCCA
TTTGAGGCATAAACATAGACATTACAAAAACTGGTGGGAAAAAGGCTTTTCTTGCGAAAACAAAA
CATCAATATCGCGTATCCTAATGAGAAGACAATGTTTATAGTGCCTAACCCTGAAAAGAATAGGG
ATTAGTATAACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATACCATAAAAAACGGGGG
AAAAGAAAGCTTTTCTTACGACAACAAAGCATCAATGTCATGCATC
Found at i:180915 original size:474 final size:470
Alignment explanation
Indices: 180106--181428 Score: 1821
Period size: 474 Copynumber: 2.8 Consensus size: 470
180096 AATGTCATGC
* *
180106 ATCCTAAAGAGAAGACTAAGTTTATGGTGCCTAATCCGGAAAAGAATGGGGATTAGTATGAGTAT
1 ATCCTAAAGAGAAGACTAAGTTTATTGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTAT
* * *
180171 TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCCAAAATGGGGAAAAGAAAGGTTTTC
66 TCATGTTTGTCTTATTTAAGAGACAAACTTTGA-TCTATCAAAAACGGGGAAAAGAAAAGTTTTC
* * **
180236 TTACGACACCAAAGCATCAATGTCCTGTATCCTATTGAAGGGGCGGTGTTTTTGGCTCCCAATCT
130 TTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAA-GGGAAGTGTTTTTGGCTCCCAATCT
* *
180301 TGAAAAGAGTGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAGAGGATGAACTTTGATTTT
194 TGAAAAGAGAGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAGAGGATGAACTTTGATTTT
* * * * * *
180366 ATGAAAAATAAGGCAAAGAAACGATATCCATGCAAAAGAAAATCATCAATATCATTTCTCTTAGT
259 AAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAAT
180431 GAGGAATGTGCTTATGGAGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGT
324 GAGGAATGTGCTTAT-GAGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGT
** * *
180496 CCCATTTGAGGCATAAACTTAGACATTACAAAAATTGGTGGGAAAAATGCTTTTCTTGCGAAAAC
388 CCCATTTGAGGCATAAACTTAGACATTACAAAAATCAGAGGGAAAAATGCTTTTCTAGCGAAAAC
*
180561 AAAACATCAATATCGCGT
453 AAAACATCAATATCGCAT
* * *
180579 ATCCTAATGAGTAGACTAAGTTTATTGTGCCTAATCCTGAAAAAGAATGGGGATTAGTATAAGTA
1 ATCCTAAAGAGAAGACTAAGTTTATTGTGCCTAATCCTG-AAAAGAATGGGGATTAGTATGAGTA
* *
180644 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATACTATAAAAAACGGGGGAAAGAAAAGTTTT
65 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT-CTATCAAAAACGGGGAAAAGAAAAGTTTT
* * *
180709 CTTGTGACAACAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGCTTTTGG-TACCCAAT
129 CTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAA-GTGTTTTTGGCT-CCCAAT
* * * *
180773 CTTGGAAGGAGAGGAGATTGTTGCGAGAATCGATGCTTGTCTTTTTTA-AGGGATGAACTTTGAT
192 CTTGAAAAGAGAGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAGA-GGATGAACTTTGAT
** * *
180837 TTTAAGGAAAAT-AGAGCAAAGAAAAGATTTTGATGTAATAGAAAATCATCAATATCATTTCTCC
256 TTTAAGGAAAATAAG-GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCC
* * * *
180901 TATTGAGTAATGTGCTTATAGTGCCTAATCACAAAATGAAAGAAGATCATTACTAGAATCCATGT
320 TAATGAGGAATGTGCTTAT-GAGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
* * * *
180966 TTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAAGTCAGAGGGAAAAATGCTTTTCTAGTGA
384 TTGTCCCATTTGAGGCATAAACTTAGACATTACAAAAATCAGAGGGAAAAATGCTTTTCTAGCGA
*
181031 AACCAAAACATCAATATCGCAT
449 AAACAAAACATCAATATCGCAT
* * * * * * * **
181053 AACCTAAAGAGAAGACTATGCTTA-TGTTGCCTTATGCTGAAAAGAATGGGGGTTAGTTTGACCA
1 ATCCTAAAGAGAAGACTAAGTTTATTG-TGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTA
* * *
181117 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTCATCAAAAACGGAGAAAAGAAAAACTTT
65 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATCT-ATCAAAAACGGGGAAAAG-AAAAGTTT
*
181182 TCTTGCGACACCAAAGCATCAAAGTCATGTATCCTATTGAAGGGACAGTGTTTTTGGCTCCCAAT
128 TCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGA-AGTGTTTTTGGCTCCCAAT
* * * * *
181247 TTTGTAAAGA-ATAGAGATTGTTACGAGAATCAATGCTTGTCTTATTTAGAGGATGAACTTCGAT
192 CTTGAAAAGAGA-GGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAGAGGATGAACTTTGAT
*
181311 TTT-AGGAAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCACCAATATCATTTCTCC
256 TTTAAGG-AAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCC
* * * *
181375 TAATGAGGAATGTGCTTATAATGCCTTAGCACAAAATGAATGAAGATCGTTACT
320 TAATGAGGAATGTGCTTATGA-GCCTAATCACAAAATGAATGAAGATCATTACT
181429 GATGACAACC
Statistics
Matches: 745, Mismatches: 89, Indels: 31
0.86 0.10 0.04
Matches are distributed among these distances:
472 1 0.00
473 119 0.16
474 620 0.83
475 5 0.01
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.30
Consensus pattern (470 bp):
ATCCTAAAGAGAAGACTAAGTTTATTGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTAT
TCATGTTTGTCTTATTTAAGAGACAAACTTTGATCTATCAAAAACGGGGAAAAGAAAAGTTTTCT
TGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAAGTGTTTTTGGCTCCCAATCTTG
AAAAGAGAGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAGAGGATGAACTTTGATTTTAA
GGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGA
GGAATGTGCTTATGAGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCCC
ATTTGAGGCATAAACTTAGACATTACAAAAATCAGAGGGAAAAATGCTTTTCTAGCGAAAACAAA
ACATCAATATCGCAT
Found at i:186441 original size:18 final size:19
Alignment explanation
Indices: 186399--186448 Score: 52
Period size: 18 Copynumber: 2.7 Consensus size: 19
186389 TCCATCTTCT
186399 TCTCTCCTC-CTCTTGTCA
1 TCTCTCCTCTCTCTTGTCA
*
186417 TCCCTCCTCTCTCTAT-T-A
1 TCTCTCCTCTCTCT-TGTCA
*
186435 TCTCTCCTGTCTCT
1 TCTCTCCTCTCTCT
186449 CCTCCTATCA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 21 0.78
19 5 0.19
20 1 0.04
ACGTcount: A:0.06, C:0.44, G:0.04, T:0.46
Consensus pattern (19 bp):
TCTCTCCTCTCTCTTGTCA
Found at i:186460 original size:42 final size:42
Alignment explanation
Indices: 186405--186523 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
186395 TTCTTCTCTC
* * *
186405 CTCCTCTTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
186447 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
186489 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
186524 TTGAGGGCTA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.08, C:0.45, G:0.03, T:0.44
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:186464 original size:12 final size:11
Alignment explanation
Indices: 186438--186513 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
186428 TCTATTATCT
*
186438 CTCCTGTCTCTC
1 CTCCTATCTC-C
186450 CTCCTATCATCC
1 CTCCTATC-TCC
186462 CTCCTATCT--
1 CTCCTATCTCC
*
186471 CTACTATCT--
1 CTCCTATCTCC
*
186480 CTCCTGTCTCTC
1 CTCCTATCTC-C
186492 CTCCTATCATCC
1 CTCCTATC-TCC
*
186504 CTCCTCTCTC
1 CTCCTATCTC
186514 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:186465 original size:24 final size:24
Alignment explanation
Indices: 186429--186514 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
186419 CCTCCTCTCT
* *
186429 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
186453 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
186474 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
186495 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
186515 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:186489 original size:18 final size:18
Alignment explanation
Indices: 186420--186490 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
186410 CTTGTCATCC
* *
186420 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
186438 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
186460 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
186480 CTCCTGTCTCT
1 CTCCTGTCTCT
186491 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:189028 original size:473 final size:474
Alignment explanation
Indices: 188132--190772 Score: 3503
Period size: 473 Copynumber: 5.6 Consensus size: 474
188122 CTTGGTTTTC
* * * *
188132 ATCAGTTACTAGAATCCCTGTTTGTCCCATTTGAGGCATGAGCTTAGACTTCACAAAAATTGGTG
1 ATCA-TTACTAGAATCCATATTTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTG
* * *
188197 GGGAAAAGGCTTTTCTTGCGAAAACAAAACATCAATATCGCGTATCCTAATGAGAATACTAA-GT
65 GGAAAAAGGCTTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTAATGT
* * * * * * *
188261 TTATTGTGCCTAATCCTGAACAGAATGGGGATTAGTGTGAGTATTCTTGGTTGTCTTATTTAGGA
130 TTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGA
* * * *
188326 TACAAACTTTAATACTAT-ATAAAACGGGGGAAAGAAAAGTTTTCTTGTGGCACCAAAGCATCAA
195 GACAAACTTTGATACCATCA-AAAACGGGGGAAAGAAAAGTTTTCTTGTGACACCAAAGCATCAA
*
188390 TGTCATGTATCCTATTGATGGGACGGTGTTTTTGGCTCCCAATCTTGAAAAAAAGGGAGATTGTT
259 TGTCATGTATCCTATTGAAGGGACGGTGTTTTTGGCTCCCAATCTTGAAAAAAAGGGAGATTGTT
*
188455 ACGAGAATCGATGCTTGTCTTATTTAGGGGTTGAACTTTGATTTTATGGAAAATAAGGCAAAGAA
324 ACGAGAATCGATGCTTGTCTTATTTAGGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAA
* *
188520 AAGATTTTCGTGCAGAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGC
389 AAGATTTTCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGC
*
188585 CTAGTCCCAAAATGAATGAAG
454 CTAGTCACAAAATGAATGAAG
* *
188606 ATCATTACTAGAATCCCTATTTGTCCCATTTGAGGCATGAACTTAGCCTTTACAAAAATTGGT-G
1 ATCATTACTAGAATCCATATTTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGG
* * * *
188670 GAAAGAAGGCTTTTCTTGCGAAACCAGAACAACAATATTGTGTATCCTAATGAGAAGA-TAATGT
66 GAAA-AAGGCTTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTAATGT
*
188734 TTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGA
130 TTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGA
* * * *
188799 GACAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGTTTTCTTGTTACACCAAAG-AGTCAA
195 GACAAACTTTGATACCATCAAAAACGGGGGAAAGAAAAGTTTTCTTGTGACACCAAAGCA-TCAA
* * *
188863 TGTCCTGTATCCTATTGAAGGGACGGTGTTTTTGGCTCCCAATCTTGAAAATAATGGAGATTGTT
259 TGTCATGTATCCTATTGAAGGGACGGTGTTTTTGGCTCCCAATCTTGAAAAAAAGGGAGATTGTT
* * ** *
188928 ATGAGAATTGATGCTTGTCTTACATAGGGGATGAAGTTTGATTTTATGGAAAATAAGGCAAAGAA
324 ACGAGAATCGATGCTTGTCTTATTTAGGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAA
* * * * * *
188993 AAGATTTTTATGCAAAAGAAAATCATCAGTATCATTTATCCTAGTGAGAAGAATATGCTTATAGC
389 AAGATTTTCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAG--GAATGTGCTTATAGT
* * * *
189058 GCCAAATCACAAAATTACTGACA-
452 GCCTAGTCACAAAATGAATGA-AG
* * * * * *
189081 ATTATTACTAGAATCCATATTTGTCTCAGTTAAAGCACGAACTTAGACTTTACAAAAATTGGTGG
1 ATCATTACTAGAATCCATATTTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGG
* * * * * * *
189146 GAAAGTA-GCCTTTCTTGCAAAACCAAAATATCCATAGCGCGTATCCTATTGAGAAGACT-ATGT
66 GAAA-AAGGCTTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTAATGT
* * * * * *
189209 TTATGGTACCTAATCCTAAAAATAATGGGGATTTGTATGACCATTCAAGTTTGTCTTATTTAAGA
130 TTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGA
* *
189274 GACAAACTTTGATACTATAAAAAACGGGGGAAAGAAAAGTTTTCTTGTGACACCAAAGCATCAAT
195 GACAAACTTTGATACCATCAAAAACGGGGGAAAGAAAAGTTTTCTTGTGACACCAAAGCATCAAT
** * * **
189339 GTCATGTATCCTATTGAAGGGAATGTGCTTTTGG-TACCCAATCTTG-GAAGGAGAGGAGATTGT
260 GTCATGTATCCTATTGAAGGGACGGTGTTTTTGGCT-CCCAATCTTGAAAAAAAG-GGAGATTGT
* * * *
189402 TGCGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAAT-AGAGCAAAG
323 TACGAGAATCGATGCTTGTCTTATTTAGGGGATGAACTTTGATTTTATGGAAAATAAG-GCAAAG
* * * *
189466 AAAAGATTTTGATGTAATAGAAAATCATCAATATCATTTCTCCTATTGAGGAATGTGCTTATAGT
387 AAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGT
* *
189531 GCCTAATCACAAAATGAAAGAAG
452 GCCTAGTCACAAAATGAATGAAG
* * * * *
189554 ATCATTACTAGAATCCATGTTTGTCCCATTTGAGGCATGGACTTAGACTTTACAAAAGTTAGAGG
1 ATCATTACTAGAATCCATATTTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGG
* * * * * * * * * *
189619 GAAAAATGCTTTTCTAGTGAAACTAAAACATCAATATTGCATAACCTAAAGAGAAGAAT-ATGCT
66 GAAAAAGGCTTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTAATGTT
* * * *
189683 TATGGTGCCTTATCCTGAAAAGAATGGGGGTTAGTTTGACCATTCATGTTTGTCTTATTTAAGAG
131 TATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAG
* * * * * *
189748 ACAAACTTTGATTCCATCAAAAACGGAGAAAAGAAAAACTTTTCTTGCGACACCAAAGCATCAAA
196 ACAAACTTTGATACCATCAAAAACGGGGGAAAG-AAAAGTTTTCTTGTGACACCAAAGCATCAAT
* * * ***
189813 GTCATGTATCCTATTGAAGGGACAGTGTTTTTGGCTCCCAATTTTGAAAAGAATAAAGATTGTTA
260 GTCATGTATCCTATTGAAGGGACGGTGTTTTTGGCTCCCAATCTTGAAAAAAAGGGAGATTGTTA
* * *
189878 CGAGAATCGATGCTTGTCTTATTTAGAGGATGAACTTCGATTTTATGAAAAATAAGGCAAAGAAA
325 CGAGAATCGATGCTTGTCTTATTTAGGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAA
* *
189943 AGATTTCCATGCAAAAGAAAATCACCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCC
390 AGATTTTCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCC
190008 TTAG-CACAAAATGAATGAAG
455 -TAGTCACAAAATGAATGAAG
* * * * *
190028 ATCGTTACTAGAATCTATGTTTGTCCTATTTGAGGCATGAGCTTAGACTTTACAAAAATTGGTGG
1 ATCATTACTAGAATCCATATTTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGG
* * *
190093 GGAAAAGGCTTTTCTTGCGAAAACAAAACATCAATATCACGTATCCTAATGAGAAGACTAA-GTT
66 GAAAAAGGCTTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTAATGTT
* * * * * *
190157 TATTGTGTCTAATCCTGAAAAGAATGGGGATTAGTGTGAGTATTCTTGCTTGTCTTATTTAAGAG
131 TATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAG
* * * *
190222 ACAAACTTTAATACTATAAAAAACGGGGGAAAGAAAAGTTTTCTTGTGGCACCAAAGCATCAATG
196 ACAAACTTTGATACCATCAAAAACGGGGGAAAGAAAAGTTTTCTTGTGACACCAAAGCATCAATG
190287 TCATGTATCCTATTGAAGGGACGGTGTTTTTGGCTCCCAATCTTGAAAAAAAGGGAGATTGTTAC
261 TCATGTATCCTATTGAAGGGACGGTGTTTTTGGCTCCCAATCTTGAAAAAAAGGGAGATTGTTAC
*
190352 GAGAATCGATGCTTGTCTTATTTAGGGGTTGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAA
326 GAGAATCGATGCTTGTCTTATTTAGGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAA
* *
190417 GATTTTCATGCAGAAGAAAATCATCAATATCATTTCTCCTAATAAGGAATGTGCTTATAGTGCCT
391 GATTTTCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCT
*
190482 AGTCCCAAAATGAATGAAG
456 AGTCACAAAATGAATGAAG
* * *
190501 ATCATTACTAGAATCCCTATTTGTCCCATTTGAGGCATGAGCTTAGCCTTTACAAAAATTGGTGG
1 ATCATTACTAGAATCCATATTTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGG
* * * * * **
190566 AAAAAAGGCTTTTCTTGTGAAACCAGAACAACAATATCGTGTATCCTAATGAGAAGAC-AATCCT
66 GAAAAAGGCTTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTAATGTT
* * * * *
190630 AATGGTGACTAAACCTGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTCTTATTTCAGAG
131 TATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAG
* * * * * * * *
190695 ACAAACTTTGATTCCATCAAAAATGGTGGAAAGGAAAGCTTTCCTTGCGACACCACAGCATCAAG
196 ACAAACTTTGATACCATCAAAAACGGGGGAAAGAAAAG-TTTTCTTGTGACACCAAAGCATCAAT
* *
190760 GTCGTGCATCCTA
260 GTCATGTATCCTA
190773 ATGAGAAGAC
Statistics
Matches: 1870, Mismatches: 273, Indels: 48
0.85 0.12 0.02
Matches are distributed among these distances:
472 15 0.01
473 1009 0.54
474 438 0.23
475 398 0.21
476 10 0.01
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.31
Consensus pattern (474 bp):
ATCATTACTAGAATCCATATTTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGG
GAAAAAGGCTTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTAATGTT
TATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAG
ACAAACTTTGATACCATCAAAAACGGGGGAAAGAAAAGTTTTCTTGTGACACCAAAGCATCAATG
TCATGTATCCTATTGAAGGGACGGTGTTTTTGGCTCCCAATCTTGAAAAAAAGGGAGATTGTTAC
GAGAATCGATGCTTGTCTTATTTAGGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAA
GATTTTCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCT
AGTCACAAAATGAATGAAG
Found at i:190393 original size:947 final size:945
Alignment explanation
Indices: 188136--190772 Score: 3837
Period size: 947 Copynumber: 2.8 Consensus size: 945
188126 GTTTTCATCA
* * *
188136 GTTACTAGAATCCCTGTTTGTCCCATTTGAGGCATGAGCTTAGACTTCACAAAAATTGGTGGGGA
1 GTTACTAGAATCCATGTTTGTCCTATTTGAGGCATGAGCTTAGACTTTACAAAAATTGGTGGGGA
*
188201 AAAGGCTTTTCTTGCGAAAACAAAACATCAATATCGCGTATCCTAATGAGAATACTAAGTTTATT
66 AAAGGCTTTTCTTGCGAAAACAAAACATCAATATCGCGTATCCTAATGAGAAGACTAAGTTTATT
* * * *
188266 GTGCCTAATCCTGAACAGAATGGGGATTAGTGTGAGTATTCTTGGTTGTCTTATTTAGGATACAA
131 GTGCCTAATCCTGAAAAGAATGGGGATTAGTGTGAGTATTCTTGCTTGTCTTATTTAAGAGACAA
*
188331 ACTTTAATACTATATAAAACGGGGGAAAGAAAAGTTTTCTTGTGGCACCAAAGCATCAATGTCAT
196 ACTTTAATACTATAAAAAACGGGGGAAAGAAAAGTTTTCTTGTGGCACCAAAGCATCAATGTCAT
*
188396 GTATCCTATTGATGGGACGGTGTTTTTGGCTCCCAATCTTGAAAAAAAGGGAGATTGTTACGAGA
261 GTATCCTATTGAAGGGACGGTGTTTTTGGCTCCCAATCTTGAAAAAAAGGGAGATTGTTACGAGA
188461 ATCGATGCTTGTCTTATTTAGGGGTTGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATT
326 ATCGATGCTTGTCTTATTTAGGGGTTGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATT
188526 TTCG-TGCAGAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAGT
391 TT-GATGCAGAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAGT
*
188590 CCCAAAATGAATGAAGATCATTACTAGAATCCCTATTTGTCCCATTTGAGGCATGAACTTAGCCT
455 CCCAAAATGAATGAAGATCATTACTAGAATCCCTATTTGTCCCATTTGAGGCATGGACTTAGCCT
*
188655 TTACAAAAATTGGTGGAAAGAAGGCTTTTCTTGCGAAACCAGAACAACAATATTGTGTATCCTAA
520 TTACAAAAATTGG-GGAAA-AAGGCTTTTCTTGTGAAACCAGAACAACAATATTGTGTATCCTAA
*
188720 TGAGAAG-ATAATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCATGT
583 TGAGAAGAAT-ATGCTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCATGT
* **
188784 TTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGTTTTCTTGTTA
647 TTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAACTTTTCTTGCGA
* * *
188849 CACCAAAG-AGTCAATGTCCTGTATCCTATTGAAGGGACGGTGTTTTTGGCTCCCAATCTTGAAA
712 CACCAAAGCA-TCAAAGTCATGTATCCTATTGAAGGGACAGTGTTTTTGGCTCCCAATCTTGAAA
* ** * * * * * *
188913 ATAATGGAGATTGTTATGAGAATTGATGCTTGTCTTACATAGGGGATGAAGTTTGATTTTATGGA
776 AGAATAAAGATTGTTACGAGAATCGATGCTTGTCTTACATAGAGGATGAACTTCGATTTTATGAA
** * * *
188978 AAATAAGGCAAAGAAAAGATTTTTATGCAAAAGAAAATCATCAGTATCATTTATCCTAGTGAGAA
841 AAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCACCAATATCATTTATCCTAATGAG-A
* * * *
189043 GAATATGCTTATAGCGCCAAATCACAAAATTACTGACAATT
905 GAATATGCTTATAGCGCCAAAGCACAAAATGAATGACAATC
* * * * * * *
189084 ATTACTAGAATCCATATTTGT-CTCAGTTAAAGCACGAACTTAGACTTTACAAAAATTGGT-GGG
1 GTTACTAGAATCCATGTTTGTCCT-ATTTGAGGCATGAGCTTAGACTTTACAAAAATTGGTGGGG
* * * * * *
189147 -AAAGTAGCCTTTCTTGC-AAAACCAAAATATCCATAGCGCGTATCCTATTGAGAAGACTATGTT
65 AAAAG--GCTTTTCTTGCGAAAA-CAAAACATCAATATCGCGTATCCTAATGAGAAGACTAAGTT
* * * * * * ** ** *
189210 TATGGTACCTAATCCTAAAAATAATGGGGATTTGTATGACCATTCAAGTTTGTCTTATTTAAGAG
127 TATTGTGCCTAATCCTGAAAAGAATGGGGATTAGTGTGAGTATTCTTGCTTGTCTTATTTAAGAG
* *
189275 ACAAACTTTGATACTATAAAAAACGGGGGAAAGAAAAGTTTTCTTGTGACACCAAAGCATCAATG
192 ACAAACTTTAATACTATAAAAAACGGGGGAAAGAAAAGTTTTCTTGTGGCACCAAAGCATCAATG
** * * **
189340 TCATGTATCCTATTGAAGGGAATGTGCTTTTGG-TACCCAATCTTG-GAAGGAGAGGAGATTGTT
257 TCATGTATCCTATTGAAGGGACGGTGTTTTTGGCT-CCCAATCTTGAAAAAAAG-GGAGATTGTT
* * * * *
189403 GCGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAAT-AGAGCAAAGA
320 ACGAGAATCGATGCTTGTCTTATTTAGGGGTTGAACTTTGATTTTATGGAAAATAAG-GCAAAGA
* *
189467 AAAGATTTTGATGTA-ATAGAAAATCATCAATATCATTTCTCCTATTGAGGAATGTGCTTATAGT
384 AAAGATTTTGATGCAGA-AGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGT
* * * * *
189531 GCCTAATCACAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCCCATTTGAGGCATGGAC
448 GCCTAGTCCCAAAATGAATGAAGATCATTACTAGAATCCCTATTTGTCCCATTTGAGGCATGGAC
* * * * * * * **
189596 TTAGACTTTACAAAAGTTAGAGGGAAAAATGCTTTTCTAGTGAAACTAAAACATCAATATTGCAT
513 TTAGCCTTTACAAAAATT-G-GGGAAAAAGGCTTTTCTTGTGAAACCAGAACAACAATATTGTGT
* * * * * * *
189661 AACCTAAAGAGAAGAATATGCTTATGGTGCCTTATCCTGAAAAGAATGGGGGTTAGTTTGACCAT
576 ATCCTAATGAGAAGAATATGCTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTAT
* * *
189726 TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGAGAAAAGAAAAACTTTT
641 TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAAG-AAAACTTTT
*
189791 CTTGCGACACCAAAGCATCAAAGTCATGTATCCTATTGAAGGGACAGTGTTTTTGGCTCCCAATT
705 CTTGCGACACCAAAGCATCAAAGTCATGTATCCTATTGAAGGGACAGTGTTTTTGGCTCCCAATC
**
189856 TTGAAAAGAATAAAGATTGTTACGAGAATCGATGCTTGTCTTATTTAGAGGATGAACTTCGATTT
770 TTGAAAAGAATAAAGATTGTTACGAGAATCGATGCTTGTCTTACATAGAGGATGAACTTCGATTT
*
189921 TATGAAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCACCAATATCATTTCTCCTAA
835 TATGAAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCACCAATATCATTTATCCTAA
* * **
189986 TGAG-GAATGTGCTTATAGTGCCTTAGCACAAAATGAATGA-AGATC
900 TGAGAGAATATGCTTATAGCGCCAAAGCACAAAATGAATGACA-ATC
*
190031 GTTACTAGAATCTATGTTTGTCCTATTTGAGGCATGAGCTTAGACTTTACAAAAATTGGTGGGGA
1 GTTACTAGAATCCATGTTTGTCCTATTTGAGGCATGAGCTTAGACTTTACAAAAATTGGTGGGGA
*
190096 AAAGGCTTTTCTTGCGAAAACAAAACATCAATATCACGTATCCTAATGAGAAGACTAAGTTTATT
66 AAAGGCTTTTCTTGCGAAAACAAAACATCAATATCGCGTATCCTAATGAGAAGACTAAGTTTATT
*
190161 GTGTCTAATCCTGAAAAGAATGGGGATTAGTGTGAGTATTCTTGCTTGTCTTATTTAAGAGACAA
131 GTGCCTAATCCTGAAAAGAATGGGGATTAGTGTGAGTATTCTTGCTTGTCTTATTTAAGAGACAA
190226 ACTTTAATACTATAAAAAACGGGGGAAAGAAAAGTTTTCTTGTGGCACCAAAGCATCAATGTCAT
196 ACTTTAATACTATAAAAAACGGGGGAAAGAAAAGTTTTCTTGTGGCACCAAAGCATCAATGTCAT
190291 GTATCCTATTGAAGGGACGGTGTTTTTGGCTCCCAATCTTGAAAAAAAGGGAGATTGTTACGAGA
261 GTATCCTATTGAAGGGACGGTGTTTTTGGCTCCCAATCTTGAAAAAAAGGGAGATTGTTACGAGA
190356 ATCGATGCTTGTCTTATTTAGGGGTTGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATT
326 ATCGATGCTTGTCTTATTTAGGGGTTGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATT
* *
190421 TTCATGCAGAAGAAAATCATCAATATCATTTCTCCTAATAAGGAATGTGCTTATAGTGCCTAGTC
391 TTGATGCAGAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAGTC
190486 CCAAAATGAATGAAGATCATTACTAGAATCCCTATTTGTCCCATTTGAGGCAT-GAGCTTAGCCT
456 CCAAAATGAATGAAGATCATTACTAGAATCCCTATTTGTCCCATTTGAGGCATGGA-CTTAGCCT
*
190550 TTACAAAAATTGGTGGAAAAAAGGCTTTTCTTGTGAAACCAGAACAACAATATCGTGTATCCTAA
520 TTACAAAAATTGG-GG-AAAAAGGCTTTTCTTGTGAAACCAGAACAACAATATTGTGTATCCTAA
* * * *
190615 TGAGAAGACA-ATCCTAATGGTGACTAAACCTGAAAAGAATAGGGATTAGTATGACTATTCATGT
583 TGAGAAGA-ATATGCTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCATGT
* * *
190679 TTGTCTTATTTCAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAAGGAAAGCTTTCCTTGCG
647 TTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAA-GAAAACTTTTCTTGCG
* * * *
190744 ACACCACAGCATCAAGGTCGTGCATCCTA
711 ACACCAAAGCATCAAAGTCATGTATCCTA
190773 ATGAGAAGAC
Statistics
Matches: 1474, Mismatches: 187, Indels: 57
0.86 0.11 0.03
Matches are distributed among these distances:
945 1 0.00
946 10 0.01
947 668 0.45
948 599 0.41
949 194 0.13
950 2 0.00
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.31
Consensus pattern (945 bp):
GTTACTAGAATCCATGTTTGTCCTATTTGAGGCATGAGCTTAGACTTTACAAAAATTGGTGGGGA
AAAGGCTTTTCTTGCGAAAACAAAACATCAATATCGCGTATCCTAATGAGAAGACTAAGTTTATT
GTGCCTAATCCTGAAAAGAATGGGGATTAGTGTGAGTATTCTTGCTTGTCTTATTTAAGAGACAA
ACTTTAATACTATAAAAAACGGGGGAAAGAAAAGTTTTCTTGTGGCACCAAAGCATCAATGTCAT
GTATCCTATTGAAGGGACGGTGTTTTTGGCTCCCAATCTTGAAAAAAAGGGAGATTGTTACGAGA
ATCGATGCTTGTCTTATTTAGGGGTTGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATT
TTGATGCAGAAGAAAATCATCAATATCATTTCTCCTAATGAGGAATGTGCTTATAGTGCCTAGTC
CCAAAATGAATGAAGATCATTACTAGAATCCCTATTTGTCCCATTTGAGGCATGGACTTAGCCTT
TACAAAAATTGGGGAAAAAGGCTTTTCTTGTGAAACCAGAACAACAATATTGTGTATCCTAATGA
GAAGAATATGCTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGT
CTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAACTTTTCTTGCGACACC
AAAGCATCAAAGTCATGTATCCTATTGAAGGGACAGTGTTTTTGGCTCCCAATCTTGAAAAGAAT
AAAGATTGTTACGAGAATCGATGCTTGTCTTACATAGAGGATGAACTTCGATTTTATGAAAAATA
AGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCACCAATATCATTTATCCTAATGAGAGAATAT
GCTTATAGCGCCAAAGCACAAAATGAATGACAATC
Found at i:190963 original size:632 final size:633
Alignment explanation
Indices: 190135--191365 Score: 1741
Period size: 632 Copynumber: 1.9 Consensus size: 633
190125 AATATCACGT
* * * *
190135 ATCCTAATGAGAAGACTAAGTTTATTGTGTCTAATCCTGAAAAGAATGGGGATTAGTGTGAGTAT
1 ATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCCGGAAAAGAATGGGGATTAGTATGAGTAT
* * *
190200 TCTTGCTTGTCTTATTTAAGAGACAAACTTTAATACTATAAAAAACGGGGGAAAGAAAAGTTTTC
66 TCATGCTTGTCTTATTTAAAAGACAAACTTTAATACTATAAAAAACGGGGAAAAGAAAAGTTTTC
*** *
190265 TTGTGGCACCAAAGCATCAATGTCATGTATCCTATTGAAGGGACGGTGTTTTTGGCTCCCAATCT
131 TTGCAACAACAAAGCATCAATGTCATGTATCCTATTGAAGGGACGGTGTTTTTGGCTCCCAATCT
* * * *
190330 TGAAAAAAAGGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAGGGGTTGAACTTTGATTTT
196 TGAAAAAAAGGGAGATTGTTACGAGAATCGATGCTTATCTTACTTAGAGGATGAACTTTGATTTT
* * *
190395 ATGGAAAATAAGGCAAAGAAAAGATTTTCATGCAGAAGAAAATCATCAATATCATTTCTCCTAAT
261 ATGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCACCAATATCATTTATCCTAAT
* * * * * * *
190460 -A-AGGAATGTGCTTATAGTGCCTAGTCCCAAAATGAATGAAGATCATTACTAGAATCCCTATTT
326 GAGAAGAATATGCTTATAGCGCCAAATCACAAAATGAATGAAGATCATTACTAGAATCCATATTT
* * ** * * **
190523 GTCCCATTTGAGGCATGAGCTTAGCCTTTACAAAAATTGGT-GGAAAAAAGGCTTTTCTTGTGAA
391 GTCCCATTTAAAGCATGAAATTAGACTTTACAAAAATTGGTGGGAAAAAA-GCCTTTCTTGCAAA
* * *
190587 ACCAGAACAACAATATCGTGTATCCTAATGAGAAGACAATCCTAATGGTGA-CTAAACCTGAAAA
455 ACCAAAACAACAATATCGCGTATCCTAATGAGAAGACAATCCTAATGGT-ACCTAAACCTAAAAA
* * *
190651 GAATAGGGATTAGTATGACTATTCATGTTTGTCTTATTTCAGAGACAAACTTTGATTCCATCAAA
519 GAATAGGGATTAGTATGACCATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAA
*
190716 AATGGTGGAAAGGAAAGCTTTCCTTGCGACACCACAGCATCAAGGTCGTGC
584 AAGGGTGGAAA-GAAAGCTTTCCTTGCGACACCACAGCATCAAGGTCGTGC
190767 ATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCCGGAAAAGAATGGGGATTAGTATGAGTAT
1 ATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCCGGAAAAGAATGGGGATTAGTATGAGTAT
* * * * * *
190832 TCATGTTTGTCTTATTTAAAAGACAAGCTTTGATTCTATCAAAGACGGGGAAAAGAAAAGTTTTC
66 TCATGCTTGTCTTATTTAAAAGACAAACTTTAATACTATAAAAAACGGGGAAAAGAAAAGTTTTC
* * *
190897 TTGCAACAACAAATCATCAATGTCCTGTATCCTATTGAAGGGACGGTGTTTTTGGCTCCTAATCT
131 TTGCAACAACAAAGCATCAATGTCATGTATCCTATTGAAGGGACGGTGTTTTTGGCTCCCAATCT
* * * *
190962 TGAAAATAATGGAGATTGTTATGAGAATTGATGCTTATCTTACTTAGAGGATGAACTTTGATTTT
196 TGAAAAAAAGGGAGATTGTTACGAGAATCGATGCTTATCTTACTTAGAGGATGAACTTTGATTTT
* *
191027 ATGGAAAATATGGCAAAGAAAAGATTTTTATGCAAAAGAAAATCACCAATATCATTTATCCTAAT
261 ATGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCACCAATATCATTTATCCTAAT
* * * * *
191092 GAGAAGAATATGCTTATAGCGCCAAATCACAAAATTACTGATGATTATTACTAGGATCCATATTT
326 GAGAAGAATATGCTTATAGCGCCAAATCACAAAATGAATGAAGATCATTACTAGAATCCATATTT
* *
191157 GTCTCATTTAAAGCATGAAATTAGACTTTACAAAAATTGGTGGGAAAATAGCCTTTCTTGCAAAA
391 GTCCCATTTAAAGCATGAAATTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAA
* * * * ** * * *
191222 CCAAAATATCAATATCGCGTATCCTATTGAGAAGACTATGTTTATGGTACCTAATCCTAAAAATA
456 CCAAAACAACAATATCGCGTATCCTAATGAGAAGACAATCCTAATGGTACCTAAACCTAAAAAGA
* * *
191287 ATGGGGATTTGTATGACCATTCAAGTTTGTCTTATTTAAGAGATAAACTTTGATTCCATCAAAAA
521 ATAGGGATTAGTATGACCATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAA
191352 GGGTGGAAAGAAAG
586 GGGTGGAAAGAAAG
191366 GCGTTGGAAG
Statistics
Matches: 521, Mismatches: 74, Indels: 7
0.87 0.12 0.01
Matches are distributed among these distances:
632 292 0.56
633 7 0.01
634 215 0.41
635 7 0.01
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.31
Consensus pattern (633 bp):
ATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCCGGAAAAGAATGGGGATTAGTATGAGTAT
TCATGCTTGTCTTATTTAAAAGACAAACTTTAATACTATAAAAAACGGGGAAAAGAAAAGTTTTC
TTGCAACAACAAAGCATCAATGTCATGTATCCTATTGAAGGGACGGTGTTTTTGGCTCCCAATCT
TGAAAAAAAGGGAGATTGTTACGAGAATCGATGCTTATCTTACTTAGAGGATGAACTTTGATTTT
ATGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCACCAATATCATTTATCCTAAT
GAGAAGAATATGCTTATAGCGCCAAATCACAAAATGAATGAAGATCATTACTAGAATCCATATTT
GTCCCATTTAAAGCATGAAATTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCAAAA
CCAAAACAACAATATCGCGTATCCTAATGAGAAGACAATCCTAATGGTACCTAAACCTAAAAAGA
ATAGGGATTAGTATGACCATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAA
GGGTGGAAAGAAAGCTTTCCTTGCGACACCACAGCATCAAGGTCGTGC
Found at i:190986 original size:158 final size:159
Alignment explanation
Indices: 190608--190930 Score: 377
Period size: 159 Copynumber: 2.0 Consensus size: 159
190598 AATATCGTGT
* * * * *
190608 ATCCTAATGAGAAGAC-AA-TCCTAATGGTGACTAAACCTGAAAAGAATAGG-GATTAGTATGAC
1 ATCCTAATGAGAAGACGAAGT--TTATGGTGCCTAATCCGGAAAAGAAT-GGAGATTAGTATGAG
* * * *
190670 TATTCATGTTTGTCTTATTTCAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAAGGAAAGCT
63 TATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCT
* * * *
190735 TTCCTTGCGACACCACAGCATCAAGGTCGTGC
128 TTCCTTGCAACAACAAAGCATCAAGGTCCTGC
* *
190767 ATCCTAATGAGAAGACTAAGTTTATGGTGCCTAATCCGGAAAAGAATGGGGATTAGTATGAGTAT
1 ATCCTAATGAGAAGACGAAGTTTATGGTGCCTAATCCGGAAAAGAATGGAGATTAGTATGAGTAT
* * *
190832 TCATGTTTGTCTTATTTAAAAGACAAGCTTTGATTCTATCAAAGACGG-GGAAAAGAAAAG-TTT
66 TCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCCATCAAAAACGGTGG-AAAGAAAAGCTTT
* * * *
190895 TCTTGCAACAACAAATCATCAATGTCCTGT
130 CCTTGCAACAACAAAGCATCAAGGTCCTGC
190925 ATCCTA
1 ATCCTA
190931 TTGAAGGGAC
Statistics
Matches: 140, Mismatches: 20, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
158 35 0.25
159 102 0.73
160 2 0.01
161 1 0.01
ACGTcount: A:0.35, C:0.16, G:0.20, T:0.29
Consensus pattern (159 bp):
ATCCTAATGAGAAGACGAAGTTTATGGTGCCTAATCCGGAAAAGAATGGAGATTAGTATGAGTAT
TCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTC
CTTGCAACAACAAAGCATCAAGGTCCTGC
Found at i:194146 original size:159 final size:158
Alignment explanation
Indices: 193026--194193 Score: 421
Period size: 159 Copynumber: 7.4 Consensus size: 158
193016 CCCAAAATTG
193026 AAAAGAATGGAGA-CTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA
1 AAAAGAATGGAGATC-ATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA
* * * * * * ***
193090 AGGAAAATAGAGCAAAGGAAAGA-TTTTGATACAAAAGAAAATCGTCAATATCATTTCTCCTGGG
65 AGGAAAATAGAGCAAA-GAAAAATTTTTGATGCAAAACAAAATCATCAATATCATGTATCCTAAT
*
193154 GAGAAGAATGTGCTTATAGTGCCTAATCAC
129 GAGGAGAATGTGCTTATAGTGCCTAATCAC
* * * ** * * * * ** * * *
193184 AAAATGAATGAAGATCACTACTAGAATCCTTGTTTATCTCATTTGAGACAGGAACTTAGACTTTA
1 AAAA-GAATGGAGATCATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA
* * * ** * * *** *
193249 CA--AAAATTGGTGGGAAA-AAGGCATTTCT--TGCGAAACCAAAA-CATCAATATTGCGTATTC
65 -AGGAAAA-TAG-AGCAAAGAA-AAATTTTTGATGC-AAAACAAAATCATCAATATCATGTATCC
* * * * * *
193308 TAAAGAGAAGACTATGTTTATGGTGCCTAATC-C
125 TAATGAGGAGAATGTGCTTATAGTGCCTAATCAC
* * * * * * * * **
193341 TGAAAAAAAT-GAGGGTTAGTT-TGACCATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGAT
1 --AAAAGAATGGA-GATCA-TTACGA-GAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGAT
** *** ** * * ** ** * * * * *
193403 TCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT
61 TTTAAGGAAAATAGAGCAAAGAAAAATTTTTGATGCAAAACAAAATCATCAATATCATGTATCCT
* * * * * * * **
193468 ATTGATGG-GAAAGTGTTTTTGGTTCCCAAAAT-TG
126 AATGA-GGAGAATGTGCTTATAG-TGCC-TAATCAC
193502 AAAAGAATGGAGA-CTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA
1 AAAAGAATGGAGATC-ATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA
* * * * * *
193566 AGGAAAATAGAGCAAAGGAAAGA-TTTTGATACAAAAGAAAATCGTCAATATCATTTCTCCTAAT
65 AGGAAAATAGAGCAAA-GAAAAATTTTTGATGCAAAACAAAATCATCAATATCATGTATCCTAAT
*
193630 GAGGAGAAAGTGCTTATAGTGCCTAATCAC
129 GAGGAGAATGTGCTTATAGTGCCTAATCAC
* * * * * * * * *
193660 AAAATGAA-GGAAGATCATTACTATAATCAATGTTTGTCTTATTTGAGGCATGAACATAGACTTT
1 AAAA-GAATGG-AGATCATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT
* * *** * * *
193724 ACA--AAAATTAGTGGGAAA-AAGGCCTTTCTT-ATG-AAACCAAAA-CATCAATATCGTGGATC
64 A-AGGAAAA-TAG-AGCAAAGAA-AAATTT-TTGATGCAAAACAAAATCATCAATATCATGTATC
* * * *
193783 CTAATGAGAAGATTGTGTTTATGGTGCCTAATC-C
124 CTAATGAGGAGAATGTGCTTATAGTGCCTAATCAC
* * ** * ** ** * * **
193817 TGAAATAAAATGGGAAAT-AGAATGAGTTTTTA-GGTTAGTCTTATTTAAGAGACAAACTTTGAT
1 --AAA-AGAAT-GGAGATCATTACGAGAATCGATGCTT-GTCTTATTTAAGGGATGAACTTTGAT
** *** * * * * ** * * * ** * * *
193880 TCCATCAAAAATGGTGGAAGGAAAAGCTTTTCATGCGACACTGAAGCATCAATGTCGTGTATCCT
61 TTTAAGGAAAATAGAGCAAAGAAAAATTTTTGATGCAAAACAAAATCATCAATATCATGTATCCT
* * * * * **
193945 ATTGATGAGAATGTGTTTTTAGTATCC-AATCTTG
126 AATGAGGAGAATGTGCTTATAGT-GCCTAATC-AC
**
193979 AAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAA
1 AAAAGAATGGAGATCATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAA
* *
194044 GGAAAATA-AGGCAAAGAAAAATTTTTGATGCAAAAGAAAATCATCAATATCATTTATCCTAATG
66 GGAAAATAGA-GCAAAGAAAAATTTTTGATGCAAAACAAAATCATCAATATCATGTATCCTAATG
194108 AGGAGAATGTGCTTATAGTGCCTAATCAC
130 AGGAGAATGTGCTTATAGTGCCTAATCAC
* * * * ** * *
194137 AAAAGGAATGAAGATCATTACAAGAATCCATGTTTGTCCCATTTGAGGTATGAACTT
1 AAAA-GAATGGAGATCATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTT
194194 AGACTTTACA
Statistics
Matches: 702, Mismatches: 249, Indels: 117
0.66 0.23 0.11
Matches are distributed among these distances:
157 16 0.02
158 174 0.25
159 422 0.60
160 81 0.12
161 9 0.01
ACGTcount: A:0.37, C:0.13, G:0.20, T:0.30
Consensus pattern (158 bp):
AAAAGAATGGAGATCATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAA
GGAAAATAGAGCAAAGAAAAATTTTTGATGCAAAACAAAATCATCAATATCATGTATCCTAATGA
GGAGAATGTGCTTATAGTGCCTAATCAC
Found at i:195250 original size:476 final size:475
Alignment explanation
Indices: 192965--195593 Score: 3764
Period size: 476 Copynumber: 5.5 Consensus size: 475
192955 TGGTTGTCAT
192965 CACCAAAGCATCAATGTCATGTATCCTATTGATGGGAAAGTGTTTTTGGTTCCCAAAATTGAAAA
1 CACCAAAGCATCAATGTCATGTATCCTATTGATGGGAAAGTGTTTTTGGTTCCCAAAATTGAAAA
193030 GAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAA
66 GAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAA
* * *** *
193095 AATAGAGCAAAGGAAAGATTTTGATACAAAAGAAAATCGTCAATATCATTTCTCCTGGGGAGAAG
131 AATAGAGCAAAGGAAAGATTTTGATACAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAG
* ** *
193160 AATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCACTACTAGAATCCTTGTTTATCTCA
196 AATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCAATGTTTGTCT-A
* * * * *
193225 TTTGAGACAGGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGGCATTTCTTGCGAAACCAAAA
260 TTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGGCCTTTCTTGTGAAACTAAAA
* * *
193290 CATCAATATTGCGTATTCTAAAGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAAAATGAGG
325 CATCAATATCGCGTATTCTAAAGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGG
*
193355 GTTAGTTTGACCATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGG
390 GTTAGTTTGACCATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGG
193420 AAAGAAAAGCTTTTCTTGCGA
455 AAAGAAAAGCTTTTCTTGCGA
193441 CACCAAAGCATCAATGTCATGTATCCTATTGATGGGAAAGTGTTTTTGGTTCCCAAAATTGAAAA
1 CACCAAAGCATCAATGTCATGTATCCTATTGATGGGAAAGTGTTTTTGGTTCCCAAAATTGAAAA
193506 GAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAA
66 GAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAA
* *
193571 AATAGAGCAAAGGAAAGATTTTGATACAAAAGAAAATCGTCAATATCATTTCTCCTAATGAGGAG
131 AATAGAGCAAAGGAAAGATTTTGATACAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAG
* * *
193636 AAAGTGCTTATAGTGCCTAATCACAAAATGAAGGAAGATCATTACTATAATCAATGTTTGTCTTA
196 AATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCAATGTTTGTC-TA
* * * *
193701 TTTGAGGCATGAACATAGACTTTACAAAAATTAGTGGGAAAAAGGCCTTTCTTATGAAACCAAAA
260 TTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGGCCTTTCTTGTGAAACTAAAA
* * * * * * *
193766 CATCAATATCGTGGATCCTAATGAGAAGATTGTGTTTATGGTGCCTAATCCTGAAATAAAATGGG
325 CATCAATATCGCGTATTCTAAAGAGAAGACTATGTTTATGGTGCCTAATCCTGAAA-AGAATGGG
*** ** * * * *
193831 AAATAGAATGA--GTTTTTAGGTTAGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGG
389 GGTTAGTTTGACCATTCTT--GTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGG
* *
193894 TGGAAGGAAAAGCTTTTCATGCGA
452 TGGAAAGAAAAGCTTTTCTTGCGA
** * * * * **
193918 CACTGAAGCATCAATGTCGTGTATCCTATTGATGAGAATGTGTTTTTAGTAT-CCAATCTTGAAA
1 CACCAAAGCATCAATGTCATGTATCCTATTGATGGGAAAGTGTTTTTGGT-TCCCAAAATTGAAA
* *
193982 AGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGA
65 AGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGA
* *
194047 AAATA-AGGCAAA-GAAAAATTTTTGATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAG
130 AAATAGA-GCAAAGGAAAGA-TTTTGATACAAAAGAAAATCATCAATATCATTTATCCTAATGAG
* * *
194110 GAGAATGTGCTTATAGTGCCTAATCACAAAAGGAATGAAGATCATTACAAGAATCCATGTTTGTC
193 GAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCAATGTTTGT-
* * *
194175 CCATTTGAGGTATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGGCCTTTCTTATGAAA-TC
257 CTATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGGCCTTTCTTGTGAAACT-
* * * *
194239 AAAACATCAATATCCCATATTTTAAGGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAT
321 AAAACATCAATATCGCGTATTCTAAAGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAT
*
194304 GGGGGTTAGTTTGACCATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACG
386 GGGGGTTAGTTTGACCATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACG
194369 GTGGAAAGAAAAGCTTTTCTTGCGA
451 GTGGAAAGAAAAGCTTTTCTTGCGA
* * ** * * ** *
194394 CACCAAAGCATCAATGTGATGTATCATATTGAAAGGAATGTGTTTTTGGTCCCCAATCTTGGAAA
1 CACCAAAGCATCAATGTCATGTATCCTATTGATGGGAAAGTGTTTTTGGTTCCCAAAATTGAAAA
* * * * * * *
194459 GAATGGAGATTGTTATGGGAAT-GAATGCTTGTTTTATTTAAGGGATGAACCTTGATTTTAGGGA
66 GAATGGAGACTATTACGAGAATCG-ATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGA
* * *** * *
194523 AAATA-AGGCAAA-GATAGATTTTCACGTAAAAGAAAATCATCAAAATCATTTATCCTAGTGAGG
130 AAATAGA-GCAAAGGAAAGATTTTGATACAAAAGAAAATCATCAATATCATTTATCCTAATGAGG
* * *
194586 AGAATGTGCTTATA-TCGCCTAATGACAAAATGAATGAAGATCACTACTAGAATCCATGTTTGTC
194 AGAATGTGCTTATAGT-GCCTAATCACAAAATGAATGAAGATCATTACTAGAATCAATGTTTGTC
* *
194650 TCATTTGAGGCATGGACTTAGACTTTACAAACATTGGTGGGAAAAAGGCCTTTCTTGTGAAACTA
258 T-ATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGGCCTTTCTTGTGAAACTA
194715 AAACATCAATATCGCGTATTCTAAAGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATG
322 AAACATCAATATCGCGTATTCTAAAGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATG
*
194780 GGGGTTAGTTTGACCATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCCAACAAAAACGG
387 GGGGTTAGTTTGACCATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGG
*
194845 TGGCAAGAAAAGCTTTTCTTGCGA
452 TGGAAAGAAAAGCTTTTCTTGCGA
** * * * * * **
194869 CAGTATAGCATTAATGTCATGTATCCTATTGATGGGAATGTGTTCTTGGTACCCAATCTTGAAAA
1 CACCAAAGCATCAATGTCATGTATCCTATTGATGGGAAAGTGTTTTTGGTTCCCAAAATTGAAAA
* * ** * * * *
194934 GAAAGGAGATTGCTACAAGAATCGATGCTTGTCTTATTTATGGCATGAACTTTGATTTTATGGAA
66 GAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAA
* * ** *
194999 AATAAGGGCAAAGAAAAGATTTCCA-AGCAAAA-AAAATCATAAATATCATTTATCCTAATGAGG
131 AAT-AGAGCAAAGGAAAGATTTTGATA-CAAAAGAAAATCATCAATATCATTTATCCTAATGAGG
* * * * * *
195062 AGAATGTGCTCATTGTGCCTAATCCCAAAATGAGTGAAGATCATTACTAGAATCTATGTTAGTCA
194 AGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCAATGTTTGTC-
*
195127 TATTTGAGGCATGAACTTAGACTTTACAAATATTGGTGGGAAAAAGGCCTTTCTTGTGAAACTAA
258 TATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGGCCTTTCTTGTGAAACTAA
* *
195192 AACATCAATATCGCGTATTCTAAAGAGAAGACTATGTTTATGGTGTCTAATCCTGAAAAGAATGA
323 AACATCAATATCGCGTATTCTAAAGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGG
195257 GGGTTAGTTTGACCATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGT
388 GGGTTAGTTTGACCATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGT
195322 GGAAAGAAAAGCTTTTCTTGCGA
453 GGAAAGAAAAGCTTTTCTTGCGA
195345 CACCAAAGCATCAATGTCATGTATCCTATTGATGGGAAAGTGTTTTTGGTTCCCAAAATTGAAAA
1 CACCAAAGCATCAATGTCATGTATCCTATTGATGGGAAAGTGTTTTTGGTTCCCAAAATTGAAAA
*
195410 GAATGGAGACTATTACGAGAATTGATGCTTG------TTAAGGGATGAACTTTGATTTTAAGGAA
66 GAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAA
* *
195469 AATAGAGCAAAGGAAAGATTTTGATACAAAAGAAAATCGTCAATATCATTTTTCCTAATGAGGAG
131 AATAGAGCAAAGGAAAGATTTTGATACAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAG
* *
195534 AATGTGCTTATAGTGCCTAATCACAAAATGAAGGAAGATCATTACTATAATCAATGTTTG
196 AATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCAATGTTTG
195594 ATGAGAATGT
Statistics
Matches: 1927, Mismatches: 201, Indels: 56
0.88 0.09 0.03
Matches are distributed among these distances:
469 22 0.01
470 111 0.06
474 2 0.00
475 415 0.22
476 945 0.49
477 427 0.22
478 5 0.00
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.31
Consensus pattern (475 bp):
CACCAAAGCATCAATGTCATGTATCCTATTGATGGGAAAGTGTTTTTGGTTCCCAAAATTGAAAA
GAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAA
AATAGAGCAAAGGAAAGATTTTGATACAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAG
AATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCAATGTTTGTCTAT
TTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGGCCTTTCTTGTGAAACTAAAAC
ATCAATATCGCGTATTCTAAAGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGG
TTAGTTTGACCATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGA
AAGAAAAGCTTTTCTTGCGA
Found at i:195794 original size:244 final size:238
Alignment explanation
Indices: 195397--195837 Score: 661
Period size: 244 Copynumber: 1.8 Consensus size: 238
195387 TTTTTGGTTC
*
195397 CCAAAATTGAAAAGAATGGAGACTATTACGAGAATTGATGCTTGTTAAGGGATGAACTTTGATTT
1 CCAAAATTGAAAAGAATGGAGACTATTACGAGAATCGATGCTTGTTAAGGGATGAACTTTGATTT
* * * *
195462 TAAGGAAAATAGAGCAAAGGAAAGATTTTGATACAAAAGAAAATCGTCAATATCATTTTTCCTAA
66 TAAGGAAAATAGAGCAAAGAAAAAATTTTGATACAAAAGAAAATCATCAATATCATTTATCCTAA
* * * *
195527 TGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAAGGAAGATCATTACTATAATCAATGTT
131 TGAGGAGAATGGGCTTATAGTGCCTAATCACAAAAGGAAGGAAGATCATTACAAGAATCAATGTT
195592 TGATGAGAATGTGCTTATATTGATGAGAATGTATTTTTAGTAA
196 TGATGAGAATGTGCTTATATTGATGAGAATGTATTTTTAGTAA
* * *
195635 CCAATATTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTT
1 CCAAAATTGAAAAGAATGGAGACTATTACGAGAATCGATGCTTG------TTAAGGGATGAACTT
*
195700 TGATTTTAAGGAAAATATG-GGAAAGAAAAAATTTTGA-AGCAAAAGAAAATCATCAATATCATT
60 TGATTTTAAGGAAAATA-GAGCAAAGAAAAAATTTTGATA-CAAAAGAAAATCATCAATATCATT
*
195763 TATCCTAATGAGGAGAATGGGCTTATAGTGCCTAATCACAAAAGGAATGAAGATCATTACAAGAA
123 TATCCTAATGAGGAGAATGGGCTTATAGTGCCTAATCACAAAAGGAAGGAAGATCATTACAAGAA
*
195828 TCCATGTTTG
188 TCAATGTTTG
195838 TCCCATTTGA
Statistics
Matches: 180, Mismatches: 15, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
238 40 0.22
243 1 0.01
244 138 0.77
245 1 0.01
ACGTcount: A:0.40, C:0.10, G:0.20, T:0.30
Consensus pattern (238 bp):
CCAAAATTGAAAAGAATGGAGACTATTACGAGAATCGATGCTTGTTAAGGGATGAACTTTGATTT
TAAGGAAAATAGAGCAAAGAAAAAATTTTGATACAAAAGAAAATCATCAATATCATTTATCCTAA
TGAGGAGAATGGGCTTATAGTGCCTAATCACAAAAGGAAGGAAGATCATTACAAGAATCAATGTT
TGATGAGAATGTGCTTATATTGATGAGAATGTATTTTTAGTAA
Found at i:197374 original size:475 final size:476
Alignment explanation
Indices: 195618--198682 Score: 4096
Period size: 475 Copynumber: 6.4 Consensus size: 476
195608 ATATTGATGA
* * * *
195618 GAATGTATTTTTAGTAACCAATATTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTT
1 GAATGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTT
* * * *
195683 ATTTAAGGGATGAACTTTGATTTTAAGGAAAATATGGGAAAGAAAAAATTTTGAAGCAAAAGAAA
66 ATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTGATGCAAAAGAAA
* *
195748 ATCATCAATATCATTTATCCTAATGAGGAGAATGGGCTTATAGTGCCTAATCACAAAAGGAATGA
131 ATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGA
* * * * * *
195813 AGATCATTACAAGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGATTTTATAAAAATTGGC
196 AGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTAGT
** * * * * * *
195878 AAGAAAAAGGCCTTTCTTA-CAAAATCAAAACATCATTATCGCGTATTCTAAAAAGAAGACTATG
261 GGGAAAAAGGCCTTTCTTATGAAACT-AAAACATCAATATCGCGTATTCTAAAGAGAAGATTAGG
195942 TTTATGGTGCCTAATCCTGAAAAGAATGGGGGTTAGTTTGACCATTCATGTTTGTCTTATTTAAG
325 TTTATGGTGCCTAATCCTGAAAAGAATGGGGGTTAGTTTGACCATTCATGTTTGTCTTATTTAAG
*
196007 AGACAAACTTTGATTCCATCAAAAAAGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCA
390 AGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCA
* * *
196072 ATGTGATGTGTCATATTGAAAG
455 ATGTCATGTATCCTATTGAAAG
* * * * * *
196094 GAATGGGTTTTTGGTCCCCAATCTTGGAAAGAATGGAGATTGTTATGGGAAT-GAATGCTTGTTT
1 GAATGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCG-ATGCTTGTCT
* * * * * * *
196158 TATTTAAGGGAAGAACCTTGATTTTAAGGAAAATAGGGCAAAG-ATAGATTTTCACGTAAAAGAA
65 TATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTGATGCAAAAGAA
* * * * * *
196222 AATCATCAATATCATTTCTCCTAATGAGGAGAATGCGCTTAAAGTTCCTAATCACAAAATAAAGG
130 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATG
* * * * *
196287 AAGATCATTACTATAATCAATGTTTGTCTTATTTGGGGCATGAACATAGACTTTACAAAAATTAG
195 AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTAG
* * * * * *
196352 TGGAAAAAAGGCCTTTCTTATGAAACCAAAACATCAATATCGTGTATCCTGATGAGAAGATT-GT
260 TGGGAAAAAGGCCTTTCTTATGAAACTAAAACATCAATATCGCGTATTCTAAAGAGAAGATTAG-
* *** ** *** * * *
196416 GTTTATGGTGCCTAATCCTGAAATAAAATGGGAAATAGAATGAGTTTTTAGGTTAGTCTTATTTA
324 GTTTATGGTGCCTAATCCTGAAA-AGAATGGGGGTTAGTTTGACCATTCATGTTTGTCTTATTTA
* * **
196481 AGAGACAAACTTTGATTCCATCAAAAACGGTGGAAGGAAAAGCTTTTCATGCGACACTGAAGCAT
388 AGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAT
* * *
196546 CAACGTCGTGTATCCTATTG-ATG
453 CAATGTCATGTATCCTATTGAAAG
* * * *
196569 AGAATGTGTTTTTAGTATCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCGGTGCTTGTCT
1 -GAATGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCT
* * *
196634 TATTTAAGGGATAAACTTTGATTTTAAGGAAAATAAGGTAAAGAAAAAATTTTGATGCAAAAGAA
65 TATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTGATGCAAAAGAA
*
196699 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAAGGAATG
130 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATG
* * * * * *
196764 AAGATAATTACAAGAATCCATGTTTGTCCCATTTGAGGTATGAACTTAAACTTTACAAAAATTGG
195 AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTAG
* * * * * *
196829 TGGGAAAAAGGCCTTTCTTATGAAA-TCAAAACATCAATATCCCATATTTTAAGGAGAAGACTAT
260 TGGGAAAAAGGCCTTTCTTATGAAACT-AAAACATCAATATCGCGTATTCTAAAGAGAAGATTAG
196893 GTTTATGGTGCCTAATCCTGAAAAGAATGGGGGTTAGTTTGACCATTCATGTTTGTCTTATTTAA
324 GTTTATGGTGCCTAATCCTGAAAAGAATGGGGGTTAGTTTGACCATTCATGTTTGTCTTATTTAA
*
196958 GAGACAAACTTTGATTCCATCAAAAACGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
389 GAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
* *
197023 AATGTGATGTATCATATTGAAAG
454 AATGTCATGTATCCTATTGAAAG
* * * * *
197046 GAATGTGTTTTTGGTCCCCAATCTTGGAAAGAATGGAGATTGTTATGGGAAT-GAATGCTTGTTT
1 GAATGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCG-ATGCTTGTCT
* ** * * * * *
197110 TATTTAAGGGATGAACCTTGATTTTTGGGAAAATAAGGCAAAG-ATAGACTTTCACGTAAAAGAA
65 TATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTGATGCAAAAGAA
* * *
197174 AATCATCAAAATCATTTATCCTAGTGAGGAGAATGTGCTTATA-TCGCCTAATGACAAAATGAAT
130 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGT-GCCTAATCACAAAATGAAT
* * *
197238 GAAGATCACTACTAGAATCCATGTTTGTCTCATTTGAGGCATGGACTTAGACTTTACAAACATTA
194 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTA
*
197303 GTGGGAAAAAGGCCTTTCTTGTGAAACTAAAACATCAATATCGCGTATTCTAAAGAGAAGATTAG
259 GTGGGAAAAAGGCCTTTCTTATGAAACTAAAACATCAATATCGCGTATTCTAAAGAGAAGATTAG
* *
197368 GTTTATGGTGCCTAATCCTGAAAAGAAT-GGGGTTAGTTTGACCATTCTTGTTTGTCTTATATAA
324 GTTTATGGTGCCTAATCCTGAAAAGAATGGGGGTTAGTTTGACCATTCATGTTTGTCTTATTTAA
*
197432 GAGACAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
389 GAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
197497 AATGTCATGTATCCTATTG-AAG
454 AATGTCATGTATCCTATTGAAAG
* * * * * * * *
197519 AGAATGTGTTTTTGGTTCCAAATCTTG-AAACAATTGAGATTGTTGCGAAAATTGATGCCTGTCT
1 -GAATGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCT
*
197583 TATTTAAGGGATGAACTTTGATTTTAAGGAAAAT-AGAGCAAAGAAAAGATTTTGATACAAAAGA
65 TATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAG-GCAAAGAAAAGATTTTGATGCAAAAGA
** * *
197647 AAATTGTCAATATCATTTCTCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAAG
129 AAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAAT
* * * *
197712 GAAGATCATGACTATAATCCATGTTTGTCTCATTTGAGGCATGAGCATAGACTTTACAAAAATTA
194 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTA
* * *
197777 GTCGGAAAAAGGCCTTTCTTACGAAACCAAAACATCAATATCGCGTATTCTAAAGAGAAGACTCT
259 GTGGGAAAAAGGCCTTTCTTATGAAACTAAAACATCAATATCGCGTATTCTAAAGAGAAGA-T-T
* * * *
197842 A--TGTATGGTGCCTAATCCTGAAAAGAATGGGGGTTAGTTAGGCCATTCATGTTTGTTCTTTTT
322 AGGTTTATGGTGCCTAATCCTGAAAAGAATGGGGGTTAGTTTGACCATTCATGTTTG-TCTTATT
* * ** *
197905 TAAGAGACAAACTTTGATACCATCAAAAACGGTGGCAAGAAAAGCTTTTCTTGCGACAGTATAGC
386 TAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC
**
197970 ATCAATGTCATGTATCCTATTGATGG
451 ATCAATGTCATGTATCCTATTGAAAG
* * * *
197996 GAATGTGTTTTTGGTACCCAATCTTGAAAAGAAAGAAGATTGCTACAAGAATCGATGCTTGTCTT
1 GAATGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTT
* * *** * ** *
198061 CTTTATGGCCCGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCAAGCAAAA-AA
66 ATTTAAGGGATGAACTTTGATTTTAAGGAAAATAA-GGCAAAGAAAAGATTTTGATGCAAAAGAA
* * * * *
198125 AATCATAAATATTATTTATCCTAATGAGGAGAATGTGCTCATTGTGCCTAATCCCAAAATGAATG
130 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATG
* * * * *
198190 AAGATCATTACTAGAATCTATGTTAGTCTTATTTGAGGCATGAACTTAGACTTTACAAATATTGG
195 AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTAG
*
198255 TGGGAAAAAGGCCTTTCTTGTGAAACTAAAACATCAATATCGCGTATTCTAAAGAGAAGATTAGG
260 TGGGAAAAAGGCCTTTCTTATGAAACTAAAACATCAATATCGCGTATTCTAAAGAGAAGATTAGG
* *
198320 TTTATAGTGCCTAATCCTGAAAAGAAT-GGGGTTAGTTTGACCATTCTTGTTTGTCTTATTTAAG
325 TTTATGGTGCCTAATCCTGAAAAGAATGGGGGTTAGTTTGACCATTCATGTTTGTCTTATTTAAG
198384 AGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCA
390 AGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCA
**
198449 ATGTCATGTATCCTATTGATGG
455 ATGTCATGTATCCTATTGAAAG
* * ** * *
198471 GAAAGTGTTTTTGGTTCCCAAAATTGAAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTT
1 GAATGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTT
* * *
198536 ATTTAAGGGATGAACTTTGATTTTAAGGAAAGT-AGAGCAAAGGAAAGATTTTGATACAAAAGAA
66 ATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAG-GCAAAGAAAAGATTTTGATGCAAAAGAA
* * * * *
198600 AATCGTCAATATCATTTCTCCTAATGAGGAGAATGTGCTTATAGTTCCTAACCACAAAATGAAGG
130 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATG
*
198665 AAGATCATTACTATAATC
195 AAGATCATTACTAGAATC
198683 AATGCTTGAT
Statistics
Matches: 2233, Mismatches: 326, Indels: 61
0.85 0.12 0.02
Matches are distributed among these distances:
472 2 0.00
473 68 0.03
474 372 0.17
475 687 0.31
476 625 0.28
477 456 0.20
478 22 0.01
479 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.31
Consensus pattern (476 bp):
GAATGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTT
ATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTGATGCAAAAGAAA
ATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGA
AGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTAGT
GGGAAAAAGGCCTTTCTTATGAAACTAAAACATCAATATCGCGTATTCTAAAGAGAAGATTAGGT
TTATGGTGCCTAATCCTGAAAAGAATGGGGGTTAGTTTGACCATTCATGTTTGTCTTATTTAAGA
GACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAA
TGTCATGTATCCTATTGAAAG
Found at i:199396 original size:719 final size:719
Alignment explanation
Indices: 197990--199401 Score: 2001
Period size: 719 Copynumber: 2.0 Consensus size: 719
197980 TGTATCCTAT
* * * * *
197990 TGATGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAAAGAAGATTGCTACAAGAATCGATGCT
1 TGATGAGAATGTATTTTTAGTAACCAATATTGAAAAGAAAGAAGATTGCTACAAGAATCGATGCT
* * * * *
198055 TGTCTTCTTTATGGCCCGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCAAGCA
66 TGTCTTATTTAAGGCACGAACTTTGATTTTAAGGAAAATAAGGGCAAAGAAAAAATTTCCAAGCA
* * * * *
198120 AAAAAAATCATAAATATTATTTATCCTAATGAGGAGAATGTGCTCATTGTGCCTAATCCCAAAAT
131 AAAAAAATCATAAATATCATTTATCCTAATGAGGAGAATGGGCTCATAGTGCCTAATCACAAAAG
* * ** * *
198185 GAATGAAGATCATTACTAGAATCTATGTTAGTCTTATTTGAGGCATGAACTTAGACTTTACAAAT
196 GAATGAAGATCATTACAAGAATCCATGTTAGTCCCATTTGAGGCATAAACTTAGACTTTACAAAA
** ** *
198250 ATTGGTGGGAAAAAGGCCTTTCTTGTGAAACTAAAACATCAATATCGCGTATTCTAAAGAGAAGA
261 ATTGGCAGGAAAAAGGCCTTTCTTACGAAACTAAAACATCAATATCGCGTATTCTAAAAAGAAGA
** * *
198315 TTAGGTTTATAGTGCCTAATCCTGAAAAGAATGGGGTTAGTTTGACCATTCTTGTTTGTCTTATT
326 CCAGGTTTATAGTGCCTAATCCTGAAAAGAATGGGGTTAGTTAGACCATTCATGTTTGTCTTATT
*
198380 TAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC
391 TAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACAACAAAGC
* *
198445 ATCAATGTCATGTATCCTATTGATGGGAAAGTGTTTTTGGTTCCCAAAATTGAAAAGAATGGAGA
456 ATCAATGTCATGTATCCTATTGATGGGAAAGTGTTTTTGGTACCCAAAATTGAAAAGAAAGGAGA
* * * * *
198510 CTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAGTAGAGCA
521 CTACTACAAGAATCGATGCTTGTCTTATTTAAGGCACGAACTTTGATTTTAAGGAAAATAGAGCA
* ** * * * * *
198575 AAGGAAAGATTTTGATACAAAAGAAAATCGTCAATATCATTTCTCCTAATGAGGAGAATGTGCTT
586 AAGAAAAGATTTCCATACAAAAGAAAATCATAAATATCATTTATCCTAACGAGGAGAATGTGCTC
* *
198640 ATAGTTCCTAACCACAAAATGAAGGAAGATCATTACTATAATCAATGCTTGATGAGAATGTGCTT
651 ATAGTGCCTAACCACAAAATGAAGGAAGATCATTACTAGAATCAATGCTTGATGAGAATGTGCTT
198705 ATAC
716 ATAC
* * * *
198709 TGATGAGAATGTATTTTTAGTAACCAATATTGAAAAGAATGGAGATTGTTACGAGAATCGATGCT
1 TGATGAGAATGTATTTTTAGTAACCAATATTGAAAAGAAAGAAGATTGCTACAAGAATCGATGCT
* * ** *
198774 TGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAA-GGCAAAGAAAAAATTTTGATGCA
66 TGTCTTATTTAAGGCACGAACTTTGATTTTAAGGAAAATAAGGGCAAAGAAAAAATTTCCAAGCA
* *
198838 AAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGGGCTTATAGTGCCTAATCACAAAA
131 AAA-AAAATCATAAATATCATTTATCCTAATGAGGAGAATGGGCTCATAGTGCCTAATCACAAAA
* *
198903 GGAATGAAGATCATTACAAGAATCCATGTTTGTCCCATTTGAGGCATAAACTTAGACTTTATAAA
195 GGAATGAAGATCATTACAAGAATCCATGTTAGTCCCATTTGAGGCATAAACTTAGACTTTACAAA
*
198968 AATTGGCAGGAAAAAGGCCTTTCTTACGAAA-TCAAAACATCATTATCGCGTATTCTAAAAAGAA
260 AATTGGCAGGAAAAAGGCCTTTCTTACGAAACT-AAAACATCAATATCGCGTATTCTAAAAAGAA
* * *
199032 GACCATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGGTTAGTTAGGCCATTCATGTTTGTCTT
324 GACCAGGTTTATAGTGCCTAATCCTGAAAAGAAT-GGGGTTAGTTAGACCATTCATGTTTGTCTT
* * * *
199097 TTTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGCAAGAAAAGCTTTTCTTGCGACAATAT
388 ATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACAACAA
* * **
199162 AGCATCAATGTGATGTATCCTATTGATGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAAAGG
453 AGCATCAATGTCATGTATCCTATTGATGGGAAAGTGTTTTTGGTACCCAAAATTGAAAAGAAAGG
* * * *
199227 AG-TTGCTACAAGAATCGATGCTTGTCTTATTTATGGCACGAACTTTGATTTTATGGAAAATAAG
518 AGACTACTACAAGAATCGATGCTTGTCTTATTTAAGGCACGAACTTTGATTTTAAGGAAAAT-AG
*
199291 GGCAAAGAAAAGATTTCCA-AGCAAAA-AAAATCATAAATATCATTTATCCTAACGAGGAGAATG
582 AGCAAAGAAAAGATTTCCATA-CAAAAGAAAATCATAAATATCATTTATCCTAACGAGGAGAATG
*
199354 TGCTCATTGTGCCTAATCC-CAAAATG-AGTGAAGATCATTACTAGAATC
646 TGCTCATAGTGCCTAA-CCACAAAATGAAG-GAAGATCATTACTAGAATC
199402 TATGTTAGTC
Statistics
Matches: 607, Mismatches: 79, Indels: 14
0.87 0.11 0.02
Matches are distributed among these distances:
718 25 0.04
719 410 0.68
720 172 0.28
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (719 bp):
TGATGAGAATGTATTTTTAGTAACCAATATTGAAAAGAAAGAAGATTGCTACAAGAATCGATGCT
TGTCTTATTTAAGGCACGAACTTTGATTTTAAGGAAAATAAGGGCAAAGAAAAAATTTCCAAGCA
AAAAAAATCATAAATATCATTTATCCTAATGAGGAGAATGGGCTCATAGTGCCTAATCACAAAAG
GAATGAAGATCATTACAAGAATCCATGTTAGTCCCATTTGAGGCATAAACTTAGACTTTACAAAA
ATTGGCAGGAAAAAGGCCTTTCTTACGAAACTAAAACATCAATATCGCGTATTCTAAAAAGAAGA
CCAGGTTTATAGTGCCTAATCCTGAAAAGAATGGGGTTAGTTAGACCATTCATGTTTGTCTTATT
TAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACAACAAAGC
ATCAATGTCATGTATCCTATTGATGGGAAAGTGTTTTTGGTACCCAAAATTGAAAAGAAAGGAGA
CTACTACAAGAATCGATGCTTGTCTTATTTAAGGCACGAACTTTGATTTTAAGGAAAATAGAGCA
AAGAAAAGATTTCCATACAAAAGAAAATCATAAATATCATTTATCCTAACGAGGAGAATGTGCTC
ATAGTGCCTAACCACAAAATGAAGGAAGATCATTACTAGAATCAATGCTTGATGAGAATGTGCTT
ATAC
Found at i:199655 original size:475 final size:477
Alignment explanation
Indices: 198709--200822 Score: 2989
Period size: 475 Copynumber: 4.4 Consensus size: 477
198699 GTGCTTATAC
* * * * * *
198709 TGATGAGAATGTATTTTTAGTAACCAATATTGAAAAGAATGGAGATTGTTACGAGAATCGATGCT
1 TGATGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGATTGTTACAAGAATCGATGCT
* *
198774 TGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAA-GGCAAAGAAAAAATTTTGATGCA
66 TGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGGCAAAGAAAAGATTTTGAAGCA
* *
198838 AAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGGGCTTATAGTGCCTAATCACAAAA
131 AAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCCCAAAA
* * * * * * *
198903 GGAATGAAGATCATTACAAGAATCCATGTTTGTCCCATTTGAGGCATAAACTTAGACTTTATAAA
196 TGAGTGAAGATCATTACTAGAATCCATGTTAGTCTCATTTGAGGCATGAACTTAGACTTTACAAA
** * * *
198968 AATTGGCAGGAAAAAGGCCTTTCTTACGAAA-TCAAAACATCATTATCGCGTATTCTAAAAAGAA
261 AATTGGTGGGAAAAAGGCCTTTCTTGCGAAACT-AAAACATCAATATCGCGTATTCTAAAGAGAA
* * *
199032 GACCATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGGTTAGTTAGGCCATTCATGTTTGTCTT
325 GACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGGTTAGTTAGACCATTCTTGTTTGTCTT
* * ** *
199097 TTTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGCAAGAAAAGCTTTTCTTGCGACAATAT
390 ATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAA
*
199162 AGCATCAATGTGATGTATCCTAT
455 AGCATCAATGTCATGTATCCTAT
* *
199185 TGATGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAAAGGAG-TTGCTACAAGAATCGATGCT
1 TGATGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGATTGTTACAAGAATCGATGCT
* * * * **
199249 TGTCTTATTTATGGCACGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCAAGCA
66 TGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGGCAAAGAAAAGATTTTGAAGCA
* * * *
199314 AAA-AAAATCATAAATATCATTTATCCTAACGAGGAGAATGTGCTCATTGTGCCTAATCCCAAAA
131 AAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCCCAAAA
* * *
199378 TGAGTGAAGATCATTACTAGAATCTATGTTAGTCTTATTTGAGGCATGAACTTAGCCTTTACAAA
196 TGAGTGAAGATCATTACTAGAATCCATGTTAGTCTCATTTGAGGCATGAACTTAGACTTTACAAA
* * *
199443 TATTGGTGGGAAAAAGGCCTTTCTTGTGAAACTAAAACATCAATATCACGTATTCTAAAGAGAAG
261 AATTGGTGGGAAAAAGGCCTTTCTTGCGAAACTAAAACATCAATATCGCGTATTCTAAAGAGAAG
* *
199508 ACTAGGTTTATGGTGCCTAATCCTGAAAAGAATGGGGGTTAGTTTGACCATTCTTGTTTGTCTTA
326 ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGGTTAGTTAGACCATTCTTGTTTGTCTTA
* *
199573 TATAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAA
391 TTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAA
199638 GCATCAATGTCATGTATCCTAT
456 GCATCAATGTCATGTATCCTAT
* * * * * * * * *
199660 TGAAGAGAATGTGTTTTTTGTTCCAAATCTTG-AAACAATTGAGATTGTTGCGAA-AATTGATGC
1 TGATGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGATTGTTAC-AAGAATCGATGC
*
199723 TTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT-AGAGCAAAGAAAAGATTTTGATA-
65 TTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGGCAAAGAAAAGATTTTGA-AG
* * *
199786 CAAAAGAAAATCGTCAATATCATTTCTCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAA
129 CAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCCCAA
* * * *
199851 AATGAAG-GAAGATCATTACTATAATCCATGTTTGTCTCATTTGAGGCATGAGCATAGACTTTAC
194 AATG-AGTGAAGATCATTACTAGAATCCATGTTAGTCTCATTTGAGGCATGAACTTAGACTTTAC
* * * *
199915 AAAAATTAGTCGGAAAAAGGCCTTTCTTGCGAAACCAAAACATCAATATCGCATATTCTAAAGAG
258 AAAAATTGGTGGGAAAAAGGCCTTTCTTGCGAAACTAAAACATCAATATCGCGTATTCTAAAGAG
* * * *
199980 AAGACTCTATGTATGGTGCCTAATCCTGAAAAGAATGGGGGTTAGTTAGGCCATTCTTGTTTGTC
323 AAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGGTTAGTTAGACCATTCTTGTTTGTC
* * * **
200045 TTTTTTAAGAGACAAACTTTGATTCCATCACAAACGGTGGCAAGAAAAGCTTTTCTTGCGACAGT
388 TTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACC
*
200110 ATAGCATCAATGTCATGTATCCTAT
453 AAAGCATCAATGTCATGTATCCTAT
* * *
200135 TGATGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAAAGGAGAATGCTACAAGAATCGATGCT
1 TGATGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGATTGTTACAAGAATCGATGCT
* ** * **
200200 TGTCTTATTT-ATGGCCGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCAAGCA
66 TGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGGCAAAGAAAAGATTTTGAAGCA
* * * *
200264 AAA-AAAATCATAAATATTATTTATCCTAATGAGGAGAATGTGCTCATTGTGCCTAATCCCAAAA
131 AAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCCCAAAA
* *
200328 TGAGTGAAGATCATTACTAGAATCTATGTTAGTCTTATTTGAGGCATGAACTTAGACTTTACAAA
196 TGAGTGAAGATCATTACTAGAATCCATGTTAGTCTCATTTGAGGCATGAACTTAGACTTTACAAA
* *
200393 TATTGGTGGGAAAAAGGCCTTTCTTGTGAAACTAAAACATCAATATCGCGTATTCTAAAGAGAAG
261 AATTGGTGGGAAAAAGGCCTTTCTTGCGAAACTAAAACATCAATATCGCGTATTCTAAAGAGAAG
* * *
200458 ACTATGTTTATTGTGCCTAATCCTGAAAAGAATGAGGGTTAGTTTGACCATTCTTGTTTGTCTTA
326 ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGGTTAGTTAGACCATTCTTGTTTGTCTTA
*
200523 TTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTCTTCTTGCGACACCAAA
391 TTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAA
*
200588 GCATCAATGTCTTGTATCCTAT
456 GCATCAATGTCATGTATCCTAT
* * ** * * *
200610 TGATGGGAAAGTGTTTTTGGTTCCCAAAATTGAAAAGAATGGAGACTATTACGAGAATCGATGCT
1 TGATGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGATTGTTACAAGAATCGATGCT
* * *
200675 TGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAGT-AGAGCAAAGGAAAGATTTTGATA-C
66 TGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGGCAAAGAAAAGATTTTGA-AGC
* * *
200738 AAAAGAAAATCGTCAATATCATTTCTCCTAATGAGGAGAATGTGCTTATAGTTCCTAA-CCACAA
130 AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCC-CAA
200802 AATGAAG-GAAGATCATTACTA
194 AATG-AGTGAAGATCATTACTA
200823 TATTCAATGT
Statistics
Matches: 1437, Mismatches: 184, Indels: 34
0.87 0.11 0.02
Matches are distributed among these distances:
474 33 0.02
475 1191 0.83
476 211 0.15
477 2 0.00
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.31
Consensus pattern (477 bp):
TGATGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGATTGTTACAAGAATCGATGCT
TGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGGCAAAGAAAAGATTTTGAAGCA
AAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCCCAAAA
TGAGTGAAGATCATTACTAGAATCCATGTTAGTCTCATTTGAGGCATGAACTTAGACTTTACAAA
AATTGGTGGGAAAAAGGCCTTTCTTGCGAAACTAAAACATCAATATCGCGTATTCTAAAGAGAAG
ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGGTTAGTTAGACCATTCTTGTTTGTCTTA
TTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAA
GCATCAATGTCATGTATCCTAT
Found at i:200588 original size:950 final size:950
Alignment explanation
Indices: 198732--200835 Score: 3599
Period size: 950 Copynumber: 2.2 Consensus size: 950
198722 TTTTTAGTAA
* *
198732 CCAATATTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTT
1 CCAAAATTGAAAACAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTT
* * *
198797 TGATTTTAAGGAAAATA-AGGCAAAGAAAAAATTTTGATGCAAAAGAAAATCATCAATATCATTT
66 TGATTTTAAGGAAAATAGA-GCAAAGAAAAGATTTTGATACAAAAGAAAATCGTCAATATCATTT
* * * * * *
198861 ATCCTAATGAGGAGAATGGGCTTATAGTGCCTAATCACAAAAGGAATGAAGATCATTACAAGAAT
130 CTCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAAGGAAGATCATTACTATAAT
* *
198926 CCATGTTTGTCCCATTTGAGGCATAAACTTAGACTTTATAAAAATTGGCAGGAAAAAGGCCTTTC
195 CCATGTTTGTCCCATTTGAGGCATAAACATAGACTTTACAAAAATTGGCAGGAAAAAGGCCTTTC
* * *
198991 TTACGAAATCAAAACATCATTATCGCGTATTCTAAAAAGAAGACCATGTTTATGGTGCCTAATCC
260 TTACGAAACCAAAACATCAATATCGCATATTCTAAAAAGAAGACCATG-TTATGGTGCCTAATCC
199056 TGAAAAGAATGGGGGTTAGTTAGGCCATTCATGTTTGTCTTTTTTAAGAGACAAACTTTGATTCC
324 TGAAAAGAATGGGGGTTAGTTAGGCCATTCATGTTTGTCTTTTTTAAGAGACAAACTTTGATTCC
*
199121 ATCAAAAACGGTGGCAAGAAAAGCTTTTCTTGCGACAATATAGCATCAATGTGATGTATCCTATT
389 ATCAAAAACGGTGGCAAGAAAAGCTTTTCTTGCGACAATATAGCATCAATGTCATGTATCCTATT
*
199186 GATGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAAAGGAGTTGCTACAAGAATCGATGCTTG
454 GATGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAAAGGAGATGCTACAAGAATCGATGCTTG
199251 TCTTATTTATGGCACGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCAAGCAAA
519 TCTTATTTATGGCACGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCAAGCAAA
199316 AAAAATCATAAATATCATTTATCCTAACGAGGAGAATGTGCTCATTGTGCCTAATCCCAAAATGA
584 AAAAATCATAAATATCATTTATCCTAACGAGGAGAATGTGCTCATTGTGCCTAATCCCAAAATGA
*
199381 GTGAAGATCATTACTAGAATCTATGTTAGTCTTATTTGAGGCATGAACTTAGCCTTTACAAATAT
649 GTGAAGATCATTACTAGAATCTATGTTAGTCTTATTTGAGGCATGAACTTAGACTTTACAAATAT
199446 TGGTGGGAAAAAGGCCTTTCTTGTGAAACTAAAACATCAATATCACGTATTCTAAAGAGAAGACT
714 TGGTGGGAAAAAGGCCTTTCTTGTGAAACTAAAACATCAATATCACGTATTCTAAAGAGAAGACT
*
199511 AGGTTTATGGTGCCTAATCCTGAAAAGAATGGGGGTTAGTTTGACCATTCTTGTTTGTCTTATAT
779 AGGTTTATGGTGCCTAATCCTGAAAAGAATGAGGGTTAGTTTGACCATTCTTGTTTGTCTTATAT
* *
199576 AAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
844 AAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTCTTCTTGCGACACCAAAGCA
* *
199641 TCAATGTCATGTATCCTATTGAAGAGAATGTGTTTTTTGTT-
909 TCAATGTCATGTATCCTATTGAAGAGAAAGTGTTTTTGGTTC
* * * * *
199682 CCAAATCTTG-AAACAATTGAGATTGTTGCGAAAATTGATGCTTGTCTTATTTAAGGGATGAACT
1 CCAAA-ATTGAAAACAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACT
199746 TTGATTTTAAGGAAAATAGAGCAAAGAAAAGATTTTGATACAAAAGAAAATCGTCAATATCATTT
65 TTGATTTTAAGGAAAATAGAGCAAAGAAAAGATTTTGATACAAAAGAAAATCGTCAATATCATTT
199811 CTCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAAGGAAGATCATTACTATAAT
130 CTCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAAGGAAGATCATTACTATAAT
* * * *
199876 CCATGTTTGTCTCATTTGAGGCATGAGCATAGACTTTACAAAAATTAGTC-GGAAAAAGGCCTTT
195 CCATGTTTGTCCCATTTGAGGCATAAACATAGACTTTACAAAAATT-GGCAGGAAAAAGGCCTTT
* *
199940 CTTGCGAAACCAAAACATCAATATCGCATATTCTAAAGAGAAGACTCTATG-TATGGTGCCTAAT
259 CTTACGAAACCAAAACATCAATATCGCATATTCTAAAAAGAAGAC-C-ATGTTATGGTGCCTAAT
*
200004 CCTGAAAAGAATGGGGGTTAGTTAGGCCATTCTTGTTTGTCTTTTTTAAGAGACAAACTTTGATT
322 CCTGAAAAGAATGGGGGTTAGTTAGGCCATTCATGTTTGTCTTTTTTAAGAGACAAACTTTGATT
* *
200069 CCATCACAAACGGTGGCAAGAAAAGCTTTTCTTGCGACAGTATAGCATCAATGTCATGTATCCTA
387 CCATCAAAAACGGTGGCAAGAAAAGCTTTTCTTGCGACAATATAGCATCAATGTCATGTATCCTA
200134 TTGATGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAAAGGAGAATGCTACAAGAATCGATGC
452 TTGATGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAAAGGAG-ATGCTACAAGAATCGATGC
200199 TTGTCTTATTTATGGC-CGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCAAGC
516 TTGTCTTATTTATGGCACGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCAAGC
* *
200263 AAAAAAAATCATAAATATTATTTATCCTAATGAGGAGAATGTGCTCATTGTGCCTAATCCCAAAA
581 AAAAAAAATCATAAATATCATTTATCCTAACGAGGAGAATGTGCTCATTGTGCCTAATCCCAAAA
200328 TGAGTGAAGATCATTACTAGAATCTATGTTAGTCTTATTTGAGGCATGAACTTAGACTTTACAAA
646 TGAGTGAAGATCATTACTAGAATCTATGTTAGTCTTATTTGAGGCATGAACTTAGACTTTACAAA
*
200393 TATTGGTGGGAAAAAGGCCTTTCTTGTGAAACTAAAACATCAATATCGCGTATTCTAAAGAGAAG
711 TATTGGTGGGAAAAAGGCCTTTCTTGTGAAACTAAAACATCAATATCACGTATTCTAAAGAGAAG
* *
200458 ACTATGTTTATTGTGCCTAATCCTGAAAAGAATGAGGGTTAGTTTGACCATTCTTGTTTGTCTTA
776 ACTAGGTTTATGGTGCCTAATCCTGAAAAGAATGAGGGTTAGTTTGACCATTCTTGTTTGTCTTA
*
200523 TTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTCTTCTTGCGACACCAAA
841 TATAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTCTTCTTGCGACACCAAA
* * *
200588 GCATCAATGTCTTGTATCCTATTGATGGGAAAGTGTTTTTGGTTC
906 GCATCAATGTCATGTATCCTATTGAAGAGAAAGTGTTTTTGGTTC
* * *
200633 CCAAAATTGAAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTT
1 CCAAAATTGAAAACAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTT
* *
200698 TGATTTTAAGGAAAGTAGAGCAAAGGAAAGATTTTGATACAAAAGAAAATCGTCAATATCATTTC
66 TGATTTTAAGGAAAATAGAGCAAAGAAAAGATTTTGATACAAAAGAAAATCGTCAATATCATTTC
* * *
200763 TCCTAATGAGGAGAATGTGCTTATAGTTCCTAACCACAAAATGAAGGAAGATCATTACTATATTC
131 TCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAAGGAAGATCATTACTATAATC
*
200828 AATGTTTG
196 CATGTTTG
200836 ATGAGAATGT
Statistics
Matches: 1085, Mismatches: 61, Indels: 15
0.93 0.05 0.01
Matches are distributed among these distances:
950 856 0.79
951 226 0.21
952 3 0.00
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.31
Consensus pattern (950 bp):
CCAAAATTGAAAACAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTT
TGATTTTAAGGAAAATAGAGCAAAGAAAAGATTTTGATACAAAAGAAAATCGTCAATATCATTTC
TCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAAGGAAGATCATTACTATAATC
CATGTTTGTCCCATTTGAGGCATAAACATAGACTTTACAAAAATTGGCAGGAAAAAGGCCTTTCT
TACGAAACCAAAACATCAATATCGCATATTCTAAAAAGAAGACCATGTTATGGTGCCTAATCCTG
AAAAGAATGGGGGTTAGTTAGGCCATTCATGTTTGTCTTTTTTAAGAGACAAACTTTGATTCCAT
CAAAAACGGTGGCAAGAAAAGCTTTTCTTGCGACAATATAGCATCAATGTCATGTATCCTATTGA
TGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAAAGGAGATGCTACAAGAATCGATGCTTGTC
TTATTTATGGCACGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCAAGCAAAAA
AAATCATAAATATCATTTATCCTAACGAGGAGAATGTGCTCATTGTGCCTAATCCCAAAATGAGT
GAAGATCATTACTAGAATCTATGTTAGTCTTATTTGAGGCATGAACTTAGACTTTACAAATATTG
GTGGGAAAAAGGCCTTTCTTGTGAAACTAAAACATCAATATCACGTATTCTAAAGAGAAGACTAG
GTTTATGGTGCCTAATCCTGAAAAGAATGAGGGTTAGTTTGACCATTCTTGTTTGTCTTATATAA
GAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTCTTCTTGCGACACCAAAGCATC
AATGTCATGTATCCTATTGAAGAGAAAGTGTTTTTGGTTC
Found at i:201079 original size:244 final size:244
Alignment explanation
Indices: 200633--201079 Score: 689
Period size: 244 Copynumber: 1.8 Consensus size: 244
200623 TTTTTGGTTC
* *
200633 CCAAAATTGAAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTT
1 CCAAAATTGAAAAAAATGGAGACTATTACAAGAATCGATGCTTGTCTTATTTAAGGGATGAACTT
* * * * *
200698 TGATTTTAAGGAAAGTAGAGCAAAGGAAAGATTTTGATACAAAAGAAAATCGTCAATATCATTTC
66 TGATTTTAAGGAAAATAGAGCAAAGAAAAAATTTTGATACAAAAGAAAATCATCAATATCATTTA
* * * * * * *
200763 TCCTAATGAGGAGAATGTGCTTATAGTTCCTAACCACAAAATGAAGGAAGATCATTACTATATTC
131 TCCTAATGAGGAAAATGGGCTTATAGTGCCTAACCACAAAAGGAAGGAAGATCATTACAAGAATC
200828 AATGTTTGATGAGAATGTGCTTATATTGATGAGAATGTATTTTTAGTAA
196 AATGTTTGATGAGAATGTGCTTATATTGATGAGAATGTATTTTTAGTAA
* * *
200877 CCAATATTGAAAAAAATGGAGATTGTTACAAGAATCGATGCTTGTCTTATTTAAGGGATGAACTT
1 CCAAAATTGAAAAAAATGGAGACTATTACAAGAATCGATGCTTGTCTTATTTAAGGGATGAACTT
*
200942 TGATTTTAAGGAAAATA-AGGCAAAGAAAAAATTTTGATGCAAAAGAAAATCATCAATATCATTT
66 TGATTTTAAGGAAAATAGA-GCAAAGAAAAAATTTTGATACAAAAGAAAATCATCAATATCATTT
* *
201006 ATCCTAATGAGGAAAATGGGCTTATAGTGCCTAATCACAAAAGGAATGAAGATCATTACAAGAAT
130 ATCCTAATGAGGAAAATGGGCTTATAGTGCCTAACCACAAAAGGAAGGAAGATCATTACAAGAAT
*
201071 CCATGTTTG
195 CAATGTTTG
201080 TCCCATTTGA
Statistics
Matches: 181, Mismatches: 21, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
243 1 0.01
244 180 0.99
ACGTcount: A:0.40, C:0.11, G:0.19, T:0.30
Consensus pattern (244 bp):
CCAAAATTGAAAAAAATGGAGACTATTACAAGAATCGATGCTTGTCTTATTTAAGGGATGAACTT
TGATTTTAAGGAAAATAGAGCAAAGAAAAAATTTTGATACAAAAGAAAATCATCAATATCATTTA
TCCTAATGAGGAAAATGGGCTTATAGTGCCTAACCACAAAAGGAAGGAAGATCATTACAAGAATC
AATGTTTGATGAGAATGTGCTTATATTGATGAGAATGTATTTTTAGTAA
Found at i:201623 original size:719 final size:719
Alignment explanation
Indices: 200132--202273 Score: 3330
Period size: 719 Copynumber: 3.0 Consensus size: 719
200122 TCATGTATCC
* * * * * * * *
200132 TATTGATGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAAAGGAGAATGCTACAAGAATCGAT
1 TATTGATGAGAATGTATTTTTAGTAACCAATATTGAAAAGAATGGAGATTGTTACAAGAATCGAT
* ** * * ** *
200197 GCTTGTCTTATTT-ATGGCCGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCAA
66 GCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAA-GGCAAAGAAAAAATTTTGAT
* * * * * * *
200261 GCAAAA-AAAATCATAAATATTATTTATCCTAATGAGGAGAATGTGCTCATTGTGCCTAATCCCA
130 GCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAAAATGGGCTTATAGTGCCTAATCACA
* * * * * ** *
200325 AAATGAGTGAAGATCATTACTAGAATCTATGTTAGTCTTATTTGAGGCATGAACTTAGACTTTAC
195 AAAGGAATGAAGATCATTACAAGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGACTTTAT
* ** ** * *
200390 AAATATTGGTGGGAAAAAGGCCTTTCTTGTGAAA-CTAAAACATCAATATCGCGTATTCTAAAGA
260 AAAAATTGGCAGGAAAAAGGCCTTTCTTACGAAATC-AAAACATCATTATCGCGTATTCTAAAAA
* *
200454 GAAGACTATGTTTATTGTGCCTAATCCTGAAAAGAATGAGGGTTAGTTTGACCATTCTTGTTTGT
324 GAAGACCATGTTTATGGTGCCTAATCCTGAAAAGAATGAGGGTTAGTTTGACCATTCTTGTTTGT
* *
200519 CTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTCTTCTTGCGACAC
389 CTTATTTAAGAGACAAACTTTGATTCCATCAAAAAAGGTGGAAAGAAAAGCTTTTCTTGCGACAC
* * * * *
200584 CAAAGCATCAATGTCTTGTATCCTATTGATGGGAAAGTGTTTTTGGTTCCCAAA-ATTGAAAAGA
454 CAAAGCATCAATGTCATGTATCCTATTGAAGAGAATGTGTTTTTGGTT-CCAAATCTTG-AAAGA
* * * *
200648 ATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAG
517 ATGGAGATTGTTACGAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAA
*
200713 TAGAGCAAAGGAAAGATTTTGATACAAAAGAAAATCGTCAATATCATTTCTCCTAATGAGGAGAA
582 TAGAGCAAAGGAAAGATTTTGATCCAAAAGAAAATCGTCAATATCATTTCTCCTAATGAGGAGAA
* *
200778 TGTGCTTATAGTTCCTAACCACAAAATGAAGGAAGATCATTACTATATTCAATGTTTGATGAGAA
647 TGTGCTTATAGTTCCTAATCACAAAATGAAGGAAGATCATTACTATAATCAATGTTTGATGAGAA
200843 TGTGCTTA
712 TGTGCTTA
*
200851 TATTGATGAGAATGTATTTTTAGTAACCAATATTGAAAAAAATGGAGATTGTTACAAGAATCGAT
1 TATTGATGAGAATGTATTTTTAGTAACCAATATTGAAAAGAATGGAGATTGTTACAAGAATCGAT
200916 GCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAAATTTTGATG
66 GCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAAATTTTGATG
200981 CAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAAAATGGGCTTATAGTGCCTAATCACAA
131 CAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAAAATGGGCTTATAGTGCCTAATCACAA
201046 AAGGAATGAAGATCATTACAAGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGACTTTATA
196 AAGGAATGAAGATCATTACAAGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGACTTTATA
201111 AAAATTGGCAGGAAAAAGGCCTTTCTTACGAAATCAAAACATCATTATCGCGTATTCTAAAAAGA
261 AAAATTGGCAGGAAAAAGGCCTTTCTTACGAAATCAAAACATCATTATCGCGTATTCTAAAAAGA
*
201176 AGACCATGTTTATGGTGCCTAATCCTGAAAAGAATGAGGGTTGGTTTGACCATTCTTGTTTGTCT
326 AGACCATGTTTATGGTGCCTAATCCTGAAAAGAATGAGGGTTAGTTTGACCATTCTTGTTTGTCT
* *
201241 TATATAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCA
391 TATTTAAGAGACAAACTTTGATTCCATCAAAAAAGGTGGAAAGAAAAGCTTTTCTTGCGACACCA
* * *
201306 AAGCATCAATGTCATGCATCCTATTGAAGAGAATGTGTTTTTGGTTCCAAATCTTGAAACAATTG
456 AAGCATCAATGTCATGTATCCTATTGAAGAGAATGTGTTTTTGGTTCCAAATCTTGAAAGAATGG
* *
201371 AGATTGTTGCGAAAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGA
521 AGATTGTTACGAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGA
201436 GCAAAGGAAAGATTTTGATCCAAAAGAAAATCGTCAATATCATTTCTCCTAATGAGGAGAATGTG
586 GCAAAGGAAAGATTTTGATCCAAAAGAAAATCGTCAATATCATTTCTCCTAATGAGGAGAATGTG
*
201501 CTTATAGTTCCTAATCACAAAATGAAGGAAGATCCTTACTATAATCAATGTTTGATGAGAATGTG
651 CTTATAGTTCCTAATCACAAAATGAAGGAAGATCATTACTATAATCAATGTTTGATGAGAATGTG
201566 CTTA
716 CTTA
*
201570 TATTGATGAGAATGTATTTTTAGTAACCAATATTGAAAAGAATGGAGATTGTTACGAGAATCGAT
1 TATTGATGAGAATGTATTTTTAGTAACCAATATTGAAAAGAATGGAGATTGTTACAAGAATCGAT
201635 GCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAAATTTTGATG
66 GCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAAATTTTGATG
201700 CAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAAAATGGGCTTATAGTGCCTAATCACAA
131 CAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAAAATGGGCTTATAGTGCCTAATCACAA
201765 AAGGAATGAAGATCATTACAAGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGACTTTATA
196 AAGGAATGAAGATCATTACAAGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGACTTTATA
*
201830 AAAATTGGCAGGAAAAAGGCCTTTCTTACGAAATCAAAACATCATGATCGCGTATTCTAAAAAGA
261 AAAATTGGCAGGAAAAAGGCCTTTCTTACGAAATCAAAACATCATTATCGCGTATTCTAAAAAGA
* * *
201895 AGACCATTTTTATGGTGCCTAATCCTGAAAAGAATG-GGGATTAGCTTGACCATTCATGTTTGTC
326 AGACCATGTTTATGGTGCCTAATCCTGAAAAGAATGAGGG-TTAGTTTGACCATTCTTGTTTGTC
201959 TTATTTAAGAGACAAACTTTGATTCCATCAAAAAAGGTGGAAAGAAAAGCTTTTCTTGCGACACC
390 TTATTTAAGAGACAAACTTTGATTCCATCAAAAAAGGTGGAAAGAAAAGCTTTTCTTGCGACACC
* * * * * *
202024 AAAGCATCAATGTGATGTGTCATATTGAA-AGGAATGTGGTTTTGGTCCCCAATCTTGGAAAGAA
455 AAAGCATCAATGTCATGTATCCTATTGAAGA-GAATGTGTTTTTGGTTCCAAATCTT-GAAAGAA
* * * * * *
202088 TGGAGATTGTTATGGGAA-TGAATGCTTGTTTTATTTAAGGGAAGAACCTTGATTTGAAGGAAAA
518 TGGAGATTGTTACGAGAATTG-ATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAA
* * * * *
202152 TAGGGCAAA-GATAGATTTTCA-CGTAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAGA
582 TAGAGCAAAGGAAAGATTTTGATC-CAAAAGAAAATCGTCAATATCATTTCTCCTAATGAGGAGA
* * * *
202215 ATGTCCTTAAAGTGCCTAATCACAAAATAAAGGAAGATCATTACTATAATCAATGTTTG
646 ATGTGCTTATAGTTCCTAATCACAAAATGAAGGAAGATCATTACTATAATCAATGTTTG
202274 TCTTATTTGA
Statistics
Matches: 1315, Mismatches: 99, Indels: 18
0.92 0.07 0.01
Matches are distributed among these distances:
718 5 0.00
719 884 0.67
720 425 0.32
721 1 0.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (719 bp):
TATTGATGAGAATGTATTTTTAGTAACCAATATTGAAAAGAATGGAGATTGTTACAAGAATCGAT
GCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAAATTTTGATG
CAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAAAATGGGCTTATAGTGCCTAATCACAA
AAGGAATGAAGATCATTACAAGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGACTTTATA
AAAATTGGCAGGAAAAAGGCCTTTCTTACGAAATCAAAACATCATTATCGCGTATTCTAAAAAGA
AGACCATGTTTATGGTGCCTAATCCTGAAAAGAATGAGGGTTAGTTTGACCATTCTTGTTTGTCT
TATTTAAGAGACAAACTTTGATTCCATCAAAAAAGGTGGAAAGAAAAGCTTTTCTTGCGACACCA
AAGCATCAATGTCATGTATCCTATTGAAGAGAATGTGTTTTTGGTTCCAAATCTTGAAAGAATGG
AGATTGTTACGAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGA
GCAAAGGAAAGATTTTGATCCAAAAGAAAATCGTCAATATCATTTCTCCTAATGAGGAGAATGTG
CTTATAGTTCCTAATCACAAAATGAAGGAAGATCATTACTATAATCAATGTTTGATGAGAATGTG
CTTA
Found at i:204832 original size:12 final size:11
Alignment explanation
Indices: 204810--204885 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
204800 AGAGAAAGAA
*
204810 GAGAGAGGAGG
1 GAGATAGGAGG
204821 GATGATAGGAGG
1 GA-GATAGGAGG
*
204833 AGAGACAGGA--
1 -GAGATAGGAGG
*
204843 GAGATAGTA--
1 GAGATAGGAGG
204852 GAGATAGGAGG
1 GAGATAGGAGG
204863 GATGATAGGAGG
1 GA-GATAGGAGG
*
204875 AGAGACAGGAG
1 -GAGATAGGAG
204886 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:204842 original size:24 final size:24
Alignment explanation
Indices: 204809--204894 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
204799 AAGAGAAAGA
*
204809 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
204833 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
204851 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
204875 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
204895 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:204861 original size:42 final size:42
Alignment explanation
Indices: 204800--204918 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
204790 TAGCCCTCAA
* *
204800 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
204842 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
204884 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
204919 GAGAGAAGAA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.43, C:0.03, G:0.46, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:218609 original size:42 final size:42
Alignment explanation
Indices: 218554--218672 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
218544 TTCTTCTCTC
* *
218554 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
218596 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
218638 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
218673 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:218613 original size:12 final size:11
Alignment explanation
Indices: 218587--218662 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
218577 TCTATTATCT
*
218587 CTCCTGTCTCTC
1 CTCCTATCTC-C
218599 CTCCTATCATCC
1 CTCCTATC-TCC
218611 CTCCTATCT--
1 CTCCTATCTCC
*
218620 CTACTATCT--
1 CTCCTATCTCC
*
218629 CTCCTGTCTCTC
1 CTCCTATCTC-C
218641 CTCCTATCATCC
1 CTCCTATC-TCC
*
218653 CTCCTCTCTC
1 CTCCTATCTC
218663 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:218614 original size:24 final size:24
Alignment explanation
Indices: 218578--218663 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
218568 CCTCCTCTCT
* *
218578 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
218602 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
218623 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
218644 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
218664 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:218638 original size:18 final size:18
Alignment explanation
Indices: 218569--218639 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
218559 CCTGTCATCC
* *
218569 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
218587 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
218609 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
218629 CTCCTGTCTCT
1 CTCCTGTCTCT
218640 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:223754 original size:475 final size:475
Alignment explanation
Indices: 222267--228122 Score: 8092
Period size: 476 Copynumber: 12.3 Consensus size: 475
222257 AGAATAAGTT
* * *
222267 TTCAGGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAGGAAAAGCTTT
1 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTT
* ** * * * *
222332 TCATGCGACACTGAAGCATCAATGTCATGTATCCTATTGATGAGAATGTGTTTTTAGTAACCAAT
66 TCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTACCCAAT
* *
222397 CTTGAAAAGAATGGAGATTTTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACATTGATT
131 CTTG-AAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATT
* * * *
222462 TTAAGGACAATAAGGCAAAGAAAA-ATTTTTGATGCAAAAGAAAGTCATCAATATCATTTATCGT
195 TTAAGGAAAATAAGGCAAAGAAAAGA-TTTTCATGCAAAAGAAAATCATCAATATCATTTATCCT
* * *
222526 AACGAGGAGAATGTGCTTATAGTGCCTAATCACAAAAGGAATGAAGATCATTACAAGAATCCATG
259 AATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* * **
222591 TTTGTCCCATTTGAGGCATGAACTTATACTTTACAAAAATTGGTGGGAAAAAGGCCTTTCTTACG
324 TTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGGCCTTTCTTGTG
** * *
222656 AATTCAAAACATCAATATCGCGTATTCTAAAGAGAAGACTTTATTTATGGTGCCTAATCCTGAAA
389 AAACCAAAACATCAATATCGCGTATTCTAAAGAGAAGACTATGTTTATGGTGCCTAATCCTGAAA
222721 AGAATGGGGGTTAGTTTGACCA
454 AGAATGGGGGTTAGTTTGACCA
222743 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTT
1 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTT
* * * *
222808 TCTTGCGACACCAAAGCATCAATGTGATGTATCATATTGAAAGGAATGTGTTTTTGGTCCCCAAT
66 TCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTACCCAAT
* * * * *
222873 CTTGGAAAGAATGGAGAGTGTTATGGGAAT-GAATGCTTGTTTTATTTAAGGGATGAACCTTGAT
131 CTT-GAAAGAATGGAGATTGTTACGAGAATCG-ATGCTTGTCTTATTTAAGGGATGAACTTTGAT
* * *
222937 TTTAAGGAAAATAAGGCAAAG-ATAGATTTTCACGTAAAAGAAAATCATCAATATCATTTATCCT
194 TTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCT
* * * *
223001 AGTGAGGAGAATGTGCTTATATCTCCTATATCGCCTAATGACAAAATGAATGAAGATCACTACTA
259 AATGAGGAGAATGTGC-T-TA-----TA-GT-GCCTAATCACAAAATGAATGAAGATCATTACTA
*
223066 GAATCCATGTTTGTCTCATTTGAGG-ATGAACTTAGACTTTACAAACATTGGTGGGAAAAAGGCC
315 GAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGGCC
* * *
223130 TTTCTTGTGAAACTAAAATATCAATATCGCGTATTCTAAAGAGAAGACTAGGTTTATGGTGCCTA
380 TTTCTTGTGAAACCAAAACATCAATATCGCGTATTCTAAAGAGAAGACTATGTTTATGGTGCCTA
223195 ATCCTGAAAAGAATGGGGGTTAGTTTGACCA
445 ATCCTGAAAAGAATGGGGGTTAGTTTGACCA
* * *
223226 TTCTTGTTTGTCTTATATAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCTTT
1 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTT
* * * *
223291 TCTTGCGACACCAAAGCATCAACGTCATGTATCCTATTGAAGAGAATGTGTTTTTGGTTCCGAAT
66 TCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTACCCAAT
* * * * * * *
223356 CTTGAAACAATTGTGATTGTTGCAAAAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTT
131 CTTGAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTT
* * * * *
223421 TAAGGAAAATAAAGCAAAGAAAAGATTTTGATACAAAAGAAAATCGTCAATATCATTTCTCCTAA
196 TAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAA
* *
223486 TGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAAGGAAGATCATTACTATAATCCATGTT
261 TGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTT
* * * * * *
223551 TGTCTCCTTTGAGGCATGAGCATAGACTTTACAAAAATTAGTCGGAAAAAGGCCTTTCTTGCGAA
326 TGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGGCCTTTCTTGTGAA
* * *
223616 ACCAAAACATCAATATCGCGTATTCTAAAGAGAAGACTCTATGTATGGTGCCTAATCCTGAAAAG
391 ACCAAAACATCAATATCGCGTATTCTAAAGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAG
* *
223681 AATGGGGGTTAGTTAGGCCA
456 AATGGGGGTTAGTTTGACCA
* *
223701 TTCATGTTTGTCTTTTTTAAGAGACAAACTTTAATTCCATCAAAAACGGTGGAAAGAAAAGCTTT
1 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTT
* * * * *
223766 TCTTACGACACCAAATCATCAAT-TCGTGTATCCTACTGAAGGGAATGTGTTTGTGGTACCCAAT
66 TCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTACCCAAT
* * * **
223830 GTTGGAAAGAATGGAGACTGTTATGAGAATTAATGCTTG-CTTTATTTAAGGGATGAACTTTGAT
131 CTT-GAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTC-TTATTTAAGGGATGAACTTTGAT
* * * * * *
223894 TTTAAGTAAAATAGGGCAAACAAAAGATTTCCAAGCAAAAGAAAATCATCAATATCATTTATCGT
194 TTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCT
* * * * *
223959 AACGAGGAGAATGAGCTTATGGTGCCTAATCCCAAAATGAATGAAGATCATTACTAGAATGCATG
259 AATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* * * * * * * * * ** **
224024 TTAGTCTCATTTGAGGTACGAACTTAGACTTTGCGAAAATTTGTGTGAAAAATGCCCTTCCAGCA
324 TTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGGCCTTTCTTGTG
* *
224089 AAACCAAAACATCAATATCGCGTATTTTAAAGAGAAGACTATGTTTATGGTGCCTAATCTTGAAA
389 AAACCAAAACATCAATATCGCGTATTCTAAAGAGAAGACTATGTTTATGGTGCCTAATCCTGAAA
*
224154 ACAATGGGGGTTAGTTTGACCA
454 AGAATGGGGGTTAGTTTGACCA
* * *
224176 TTCATGTTTGTCTTATTTAAGAGACAAACATTGATTCCATCAAAAACAGAGGAAAGAAAAGCTTT
1 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTT
* * * ** *
224241 TGTTGCGACACCAAAGCATCAGTGTCATGTATCCTGTTGAAGGGAACCTGTTTTTGGTACCAAAT
66 TCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTACCCAAT
* * * * * *
224306 CTTGAAAAGAATGTAGATTGTTACAAGAATCGATGGTTGTTTTATTTAAAGGATGAATTTTGATT
131 CTTG-AAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATT
* * * *
224371 TTAAGGAAAAT-AGAGCAAAGGAAAGATTTTGATCCAAAAGAAAATCATCTATATCATTTATCCT
195 TTAAGGAAAATAAG-GCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCT
* *
224435 AATGAGGAGAATGTGCTTATAGTGCCTAACCACAAAATGATTGAAGATCATTACTAGAATCCATG
259 AATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* * * *
224500 TTTGCCTTATTTGATGCATGAACTTAGACTTTACAAAAATTGGTCGGAAAAAGGCCTTTCTTGTG
324 TTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGGCCTTTCTTGTG
* * *
224565 AAACCAAAACATCAATATCGCGTATTCTAAAGCGAAGACTATGTTTATGGTGTCTAATCCAGAAA
389 AAACCAAAACATCAATATCGCGTATTCTAAAGAGAAGACTATGTTTATGGTGCCTAATCCTGAAA
* * *
224630 AGAATGGGGATTAGATTGACAA
454 AGAATGGGGGTTAGTTTGACCA
* ** *
224652 TTCCTGTTTGTCTTATTTAAGAGACAAACTTTGATTCCAT-AAAAACAATGGGAAGAAAAGCTTT
1 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTT
* * * * *
224716 TCTTGCAACACCAAAGCATCAACGTCATGTATCATATTGCAGGGAATGTATTTTTGGTACCCAAT
66 TCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTACCCAAT
* * * * *
224781 CTTGGAAAGAATGAAGATTGTTATGGGAATCGATGCTTGTCTTATCTAAGGGATGAACCTTGATT
131 CTT-GAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATT
* * *
224846 TTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTA
195 TTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTA
* * * **
224911 GA-CAGAAGAATGTGCTTATAGTGCGTAATCACAAAATGAATGAAGATCGCTACTAGAATCCATG
260 -ATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* * * * *
224975 TTTATCTCATTTGAGGCAGGAACTTAGACATTACAAAAATTGGTGGGAAAAAGGCATTTCTTGCG
324 TTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGGCCTTTCTTGTG
* *
225040 AAACCAAAACATCAATATTGCGTATTCTAAAGAGAAGACTATATTTATGGTGCCTAATCCTGAAA
389 AAACCAAAACATCAATATCGCGTATTCTAAAGAGAAGACTATGTTTATGGTGCCTAATCCTGAAA
*
225105 AGAATGAGGGTTAGTTTGACCA
454 AGAATGGGGGTTAGTTTGACCA
* * *
225127 CTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGGTGGCAAGAAAAGCTTT
1 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTT
* * *
225192 TCTTGCGACACTATAGCATCAATGTCATGTATCCTATTGATGGGAATGTGTTTTTGGTACCCAAT
66 TCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTACCCAAT
* * * * * * *
225257 CTTGAAAAGAAAGGAGATTGCTACAAGAATCGATGCTTGTATTATTTATGGCATGAAATTTGATT
131 CTTG-AAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATT
* * * *
225322 TTAAGGAAAATAAGGGCAAAGAAAAGATTTCCAAGCAAAA-AAAATCGTAAATATCATTTATCCT
195 TTAAGGAAAATAA-GGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCT
* * * * *
225386 AATGAGGAGAATGTGCTCATTGTGCCTAATCCCAAAATGAATGAAGGTCGTTACTAGAATCCATG
259 AATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* * *
225451 TTAGTCTTATTTGAGGCATGAACTTAGACTTTACAAACATTGGTGGGAAAAAGGCCTTTCTTGTG
324 TTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGGCCTTTCTTGTG
* * *
225516 AAAGCAAAACATCAATATCGCGTATTCAAAAGAGAAGACTATGTTTATGGTGCCTAATCTTGAAA
389 AAACCAAAACATCAATATCGCGTATTCTAAAGAGAAGACTATGTTTATGGTGCCTAATCCTGAAA
*
225581 AGAATGAGGGTTAGTTTGACCA
454 AGAATGGGGGTTAGTTTGACCA
* *
225603 TTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATAAAAAACGGTGGAGAA-AAAAGCTT
1 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGA-AAGAAAAGCTT
* * *
225667 TTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGATGGGAAAGTGTTTTTGGTTCCCAA
65 TTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTACCCAA
** * *
225732 AATTGAAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGAT
130 TCTTG-AAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGAT
* * * * *
225797 TTTAAGGAAAAT-AGAGCAAAGGAAAGATTTTGATACAAAAGAAAATCGTCAATATCATTTCTCC
194 TTTAAGGAAAATAAG-GCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCC
* * * *
225861 TAATGAGGAGAATATGCTTATAGTGCCTAATCACAAAATGAAGGAAGATCATTACTATAATCAAT
258 TAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
* * *
225926 GTTTGTCTTATTTGAGGCATGAACATAGACTTTACAAAAATTGGTCGGAAAAAGGCCTTTCTTGT
323 GTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGGCCTTTCTTGT
* * *
225991 GAAACCAAAACATCAATATCGCGTATTCTAAAGCGAAGACTATGTTTATGGTGTCTAATCCAGAA
388 GAAACCAAAACATCAATATCGCGTATTCTAAAGAGAAGACTATGTTTATGGTGCCTAATCCTGAA
* * *
226056 AAGAATGGGGATTAGATTGACAA
453 AAGAATGGGGGTTAGTTTGACCA
* * * * * *
226079 TTCCTGTTTGTCTTATTTAAGAGACAAACTTTGTTTTCATAAAAAACGGTGCAAGGAAAAGCTTT
1 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTT
** * * * * * * *
226144 TAATGCGACACCGAAGCATCAATGTCGTGTATCCTATTGATGAGAATGTGTTTTTAGTAACCGAT
66 TCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTACCCAAT
226209 CTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATT
131 CTTG-AAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATT
* *
226274 TTAAGGAAAATAAGGCAAAGAAAAAATTTTGATGCAAAAGAAAATCATCAATATCATTTATCCTA
195 TTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTA
* *
226339 ATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAAGGAATGAAGATCATTACTATAATCCATGT
260 ATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
* *
226404 TTGTCTCATTTGAGGCATGAACATAGACTTTACAAAAATTAGTGGGAAAAAGGCCTTTCTTGTGA
325 TTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGGCCTTTCTTGTGA
* * * *
226469 AACCAAAACATCAATATCGCATATTCTAAAGAGAAGACTCTATGTATGGTGCCTAATCCTGAAAA
390 AACCAAAACATCAATATCGCGTATTCTAAAGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAA
*
226534 GAATGGGGGTTAGTTTGGCCA
455 GAATGGGGGTTAGTTTGACCA
* *
226555 TTCATGTTTGTCTTTTTTAAGAGACAAACTTTAATTCCATCAAAAACGGTGGAAAGAAAAGCTTT
1 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTT
* * *
226620 TCTTGCGACACCAAAGCATCAAT-TCGTGTATCCTACTGAAGGGAATGTGTTTGTGGTACCCAAT
66 TCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTACCCAAT
* * * * * *
226684 GTTGGAAAGAATGGAGACTGTTATGAGAATTGATGCTTGCCTTATTTAAGGGATTAACTTTGATT
131 CTT-GAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATT
* * * * * *
226749 TTAAGGAAAATAGGGCAAATAAAAGATTTCCAAGCAAAAGAAAATCTTCAATATCATTTATCGTA
195 TTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTA
* *
226814 ATGAGGAGAATGCGCTTATAGTGCCTAATCCCAAAATGAATGAAGATCATTACTAGAATCCATGT
260 ATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
* * * * * * * *
226879 TAGTCTCATTTGAGACACGAACTTAGACTTTACAAAAATTTGTGGGAAAAATGCCCTTCCTGCGA
325 TTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGGCCTTTCTTGTGA
* * *
226944 AACCAAAACATCAATATCGCGTATTTTAAAGAGAAGACTCTATTTATGGTGCCTAATCCTGAAAA
390 AACCAAAACATCAATATCGCGTATTCTAAAGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAA
*
227009 CAATGGGGGTTAGTTTGACCA
455 GAATGGGGGTTAGTTTGACCA
* * * **
227030 TTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTAT-AAAATATGGTAAAAAGAAAAGCTT
1 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAA-ACGGTGGAAAGAAAAGCTT
* *
227094 TTCTTGCGACACCGAAGCATCAATGTGATGTATCCTATTGAAGGGAATGTGTTTTTGGTACCCAA
65 TTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTACCCAA
* * * * *
227159 TCTTGGAAAGAATAGAGATTGTTATGGGAATCGATGCTTGTCTTATTTAGGGGATGAACCTTGAT
130 TCTT-GAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGAT
* *
227224 TTTAAGGAAAATAAGGCAAAGAAAAGA-TTTCTATGCAAGAGAAAATCATAAATATCATTTATAG
194 TTTAAGGAAAATAAGGCAAAGAAAAGATTTTC-ATGCAAAAGAAAATCATCAATATCATTTAT--
* * ** * *
227288 CACCTAGTGAGCAGAATGTGCTTATAGCACCAAATTACAAAATGAATGAAGATCATTACTAGAAT
256 --CCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* * *
227353 CCATGTTTGTCTTATTTGAGGCATGAACTTATACTTTACAAAAATTGGTGGGAAAAAGGCTTTTC
319 CCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGGCCTTTC
*
227418 TTGTGAAACCAAAACATCAATATCGCGTATTCTAAAGAGAAGACTATGTTTATGGTGCCTATTCC
384 TTGTGAAACCAAAACATCAATATCGCGTATTCTAAAGAGAAGACTATGTTTATGGTGCCTAATCC
*
227483 TGAAAAGAATGGAGGTTAGTTTGACCA
449 TGAAAAGAATGGGGGTTAGTTTGACCA
* *
227510 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCGTCAAAATCGGTGGAAAGAAAAGCTTT
1 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTT
* * **
227575 TCTTGCGACACCAAGGAATCAATGTCATGTATTATATTGAAGGGAATGTGTTTTTGGTACCCAAT
66 TCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTACCCAAT
* ** * * * * *
227640 CTTGGAAGGAATGGAGATTGTTGTGGGAATCGATGCTTGTCTTTTTTAAGCGATGGACCTTGATT
131 CTT-GAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATT
* *
227705 TTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCGTTTATCCTA
195 TTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTA
* * * **
227770 GTGAAGAGAATGTGCTTATAGCGCCTAATCACAAAATGAATGAAGATCACCACTAGAATCCATGT
260 ATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
* * * * * *
227835 TTATCTCATTAGAAGCATGAACTTAGAGTTTACAAACATTGGTGGGAAAAAGGCCCTTCTTGTGA
325 TTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGGCCTTTCTTGTGA
* * *
227900 AACCAAAACATCAATATCGCGTATTCTAAAGAGAAGACAATGTTTACGGTGCCTAATCCAGAAAA
390 AACCAAAACATCAATATCGCGTATTCTAAAGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAA
*
227965 GAATGGGGGTTAGTTTGTCCA
455 GAATGGGGGTTAGTTTGACCA
227986 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAA-ACAAAGCTT
1 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGA-AAAGCTT
* * * * *
228050 TTCTTGCGACATCAAAGCATCAGTATCATGTATCCTATTGAAGGG-ATCGTGTTTTTGTTACCAA
65 TTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAAT-GTGTTTTTGGTACCCA
228114 ATCTTGAAA
129 ATCTTGAAA
228123 AGAAGATCAT
Statistics
Matches: 4739, Mismatches: 596, Indels: 91
0.87 0.11 0.02
Matches are distributed among these distances:
474 96 0.02
475 1487 0.31
476 2275 0.48
477 32 0.01
480 417 0.09
481 9 0.00
482 70 0.01
483 300 0.06
484 53 0.01
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.31
Consensus pattern (475 bp):
TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTT
TCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTACCCAAT
CTTGAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTT
TAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAA
TGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTT
TGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGGCCTTTCTTGTGAA
ACCAAAACATCAATATCGCGTATTCTAAAGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAG
AATGGGGGTTAGTTTGACCA
Done.