Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold408
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 555187
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
File 2 of 3
Found at i:224571 original size:951 final size:951
Alignment explanation
Indices: 222267--228126 Score: 8227
Period size: 951 Copynumber: 6.1 Consensus size: 951
222257 AGAATAAGTT
* *
222267 TTCAGGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAGGAAAAGCTTT
1 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCTTT
* ** * * *
222332 TCATGCGACACTGAAGCATCAATGTCATGTATCCTATTGATGAGAATGTGTTTTTAGTAACCAAT
66 TCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGT-ACCAAT
* * *
222397 CTTGAAAAGAATGGAGATTTTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACATTGATT
130 CTTGAAAAGAATGGAGATTGTTACAAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATT
* * *
222462 TTAAGGACAATAAGGCAAAGAAAA-ATTTTTGATGCAAAAGAAAGTCATCAATATCATTTATCGT
195 TTAAGGAAAATAAGGCAAAGAAAAGA-TTTTGATGCAAAAGAAAATCATCAATATCATTTATCCT
* * *
222526 AACGAGGAGAATGTGCTTATAGTGCCTAATCACAAAAGGAATGAAGATCATTACAAGAATCCATG
259 AATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* * **
222591 TTTGTCCCATTTGAGGCATGAACTTATACTTTACAAAAATTGGTGGGAAAAAGGCCTTTCTTACG
324 TTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGGCCTTTCTTGTG
** *
222656 AATTCAAAACATCAATATCGCGTATTCTAAAGAGAAGACTTTATTTATGGTGCCTAATCCTGAAA
389 AAACCAAAACATCAATATCGCGTATTCTAAAGAGAAGACTATATTTATGGTGCCTAATCCTGAAA
222721 AGAATGGGGGTTAGTTTGACCATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAA
454 AGAATGGGGGTTAGTTTGACCATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAA
* *
222786 AAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTGATGTATCATATTGAAAG
519 AAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCATATTGAAGG
* * * *
222851 GAATGTGTTTTTGGTCCCCAATCTTGGAAAGAATGGAGAGTGTTATGGGAAT-GAATGCTTGTTT
584 GAATGTGTTTTTGGTACCCAATCTTGGAAAGAATGGAGACTGTTATGAGAATCG-ATGCTTGCTT
* * * * *
222915 TATTTAAGGGATGAACCTTGATTTTAAGGAAAATAAGGCAAAG-ATAGATTTTCACGTAAAAGAA
648 TATTTAAGGGATGAACCTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCAAGCAAAAGAA
* * *
222979 AATCATCAATATCATTTATCCTAGTGAGGAGAATGTGCTTATATCTCCTATATCGCCTAATGACA
713 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGC-T-TA-----TA-GT-GCCTAATCACA
*
223044 AAATGAATGAAGATCACTACTAGAATCCATGTTTGTCTCATTTGAGG-ATGAACTTAGACTTTAC
769 AAATGAATGAAGATCACTACTAGAATCCATGTTAGTCTCATTTGAGGCATGAACTTAGACTTTAC
* * * * *
223108 AAACATTGGTGGGAAAAAGGCCTTTCTTGTGAAACTAAAATATCAATATCGCGTATTCTAAAGAG
834 AAAAATTGGTGGGAAAAAGGCCCTTCTTGCGAAACCAAAACATCAATATCGCGTATTCTAAAGAG
*
223173 AAGACTAGGTTTATGGTGCCTAATCCTGAAAAGAATGGGGGTTAGTTTGACCA
899 AAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGGTTAGTTTGACCA
* *
223226 TTCTTGTTTGTCTTATATAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCTTT
1 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCTTT
* * *
223291 TCTTGCGACACCAAAGCATCAACGTCATGTATCCTATTGAAGAGAATGTGTTTTTGGTTCCGAAT
66 TCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTACC-AAT
* * * * * *
223356 CTTG-AAACAATTGTGATTGTTGCAAAAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATT
130 CTTGAAAAGAATGGAGATTGTTACAAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATT
* * * *
223420 TTAAGGAAAATAAAGCAAAGAAAAGATTTTGATACAAAAGAAAATCGTCAATATCATTTCTCCTA
195 TTAAGGAAAATAAGGCAAAGAAAAGATTTTGATGCAAAAGAAAATCATCAATATCATTTATCCTA
* *
223485 ATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAAGGAAGATCATTACTATAATCCATGT
260 ATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
* * * * * *
223550 TTGTCTCCTTTGAGGCATGAGCATAGACTTTACAAAAATTAGTCGGAAAAAGGCCTTTCTTGCGA
325 TTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGGCCTTTCTTGTGA
* *
223615 AACCAAAACATCAATATCGCGTATTCTAAAGAGAAGACTCTATGTATGGTGCCTAATCCTGAAAA
390 AACCAAAACATCAATATCGCGTATTCTAAAGAGAAGACTATATTTATGGTGCCTAATCCTGAAAA
* * * *
223680 GAATGGGGGTTAGTTAGGCCATTCATGTTTGTCTTTTTTAAGAGACAAACTTTAATTCCATCAAA
455 GAATGGGGGTTAGTTTGACCATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAA
* * * * *
223745 AACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAATCATCAAT-TCGTGTATCCTACTGAAGGG
520 AACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCATATTGAAGGG
* * **
223809 AATGTGTTTGTGGTACCCAATGTTGGAAAGAATGGAGACTGTTATGAGAATTAATGCTTGCTTTA
585 AATGTGTTTTTGGTACCCAATCTTGGAAAGAATGGAGACTGTTATGAGAATCGATGCTTGCTTTA
* * *
223874 TTTAAGGGATGAACTTTGATTTTAAGTAAAATAGGGCAAACAAAAGATTTCCAAGCAAAAGAAAA
650 TTTAAGGGATGAACCTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCAAGCAAAAGAAAA
* * * * *
223939 TCATCAATATCATTTATCGTAACGAGGAGAATGAGCTTATGGTGCCTAATCCCAAAATGAATGAA
715 TCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAA
* * * * * * *
224004 GATCATTACTAGAATGCATGTTAGTCTCATTTGAGGTACGAACTTAGACTTTGCGAAAATTTGTG
780 GATCACTACTAGAATCCATGTTAGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTG
* * ** * *
224069 TGAAAAATGCCCTTCCAGCAAAACCAAAACATCAATATCGCGTATTTTAAAGAGAAGACTATGTT
845 GGAAAAAGGCCCTTCTTGCGAAACCAAAACATCAATATCGCGTATTCTAAAGAGAAGACTATGTT
* *
224134 TATGGTGCCTAATCTTGAAAACAATGGGGGTTAGTTTGACCA
910 TATGGTGCCTAATCCTGAAAAGAATGGGGGTTAGTTTGACCA
* ** *
224176 TTCATGTTTGTCTTATTTAAGAGACAAACATTGATTCCATCAAAAACAGAGGAAAGAAAAGCTTT
1 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCTTT
* * * **
224241 TGTTGCGACACCAAAGCATCAGTGTCATGTATCCTGTTGAAGGGAACCTGTTTTTGGTACCAAAT
66 TCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTACC-AAT
* * * * *
224306 CTTGAAAAGAATGTAGATTGTTACAAGAATCGATGGTTGTTTTATTTAAAGGATGAATTTTGATT
130 CTTGAAAAGAATGGAGATTGTTACAAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATT
* * *
224371 TTAAGGAAAAT-AGAGCAAAGGAAAGATTTTGATCCAAAAGAAAATCATCTATATCATTTATCCT
195 TTAAGGAAAATAAG-GCAAAGAAAAGATTTTGATGCAAAAGAAAATCATCAATATCATTTATCCT
* *
224435 AATGAGGAGAATGTGCTTATAGTGCCTAACCACAAAATGATTGAAGATCATTACTAGAATCCATG
259 AATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* * * *
224500 TTTGCCTTATTTGATGCATGAACTTAGACTTTACAAAAATTGGTCGGAAAAAGGCCTTTCTTGTG
324 TTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGGCCTTTCTTGTG
* * * *
224565 AAACCAAAACATCAATATCGCGTATTCTAAAGCGAAGACTATGTTTATGGTGTCTAATCCAGAAA
389 AAACCAAAACATCAATATCGCGTATTCTAAAGAGAAGACTATATTTATGGTGCCTAATCCTGAAA
* * * *
224630 AGAATGGGGATTAGATTGACAATTCCTGTTTGTCTTATTTAAGAGACAAACTTTGATTCCAT-AA
454 AGAATGGGGGTTAGTTTGACCATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAA
** * * * *
224694 AAACAATGGGAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAACGTCATGTATCATATTGCAGG
519 AAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCATATTGAAGG
* * * *
224759 GAATGTATTTTTGGTACCCAATCTTGGAAAGAATGAAGATTGTTATGGGAATCGATGCTTG-TCT
584 GAATGTGTTTTTGGTACCCAATCTTGGAAAGAATGGAGACTGTTATGAGAATCGATGCTTGCT-T
* *
224823 TATCTAAGGGATGAACCTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAA
648 TATTTAAGGGATGAACCTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCAAGCAAAAGAA
* * * *
224888 AATCATCAATATCATTTCTCCTAGA-CAGAAGAATGTGCTTATAGTGCGTAATCACAAAATGAAT
713 AATCATCAATATCATTTATCCTA-ATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAAT
* * *
224952 GAAGATCGCTACTAGAATCCATGTTTA-TCTCATTTGAGGCAGGAACTTAGACATTACAAAAATT
777 GAAGATCACTACTAGAATCCATG-TTAGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATT
** *
225016 GGTGGGAAAAAGGCATTTCTTGCGAAACCAAAACATCAATATTGCGTATTCTAAAGAGAAGACTA
841 GGTGGGAAAAAGGCCCTTCTTGCGAAACCAAAACATCAATATCGCGTATTCTAAAGAGAAGACTA
* *
225081 TATTTATGGTGCCTAATCCTGAAAAGAATGAGGGTTAGTTTGACCA
906 TGTTTATGGTGCCTAATCCTGAAAAGAATGGGGGTTAGTTTGACCA
* *
225127 CTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGGTGGCAAGAAAAGCTTT
1 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCTTT
* * *
225192 TCTTGCGACACTATAGCATCAATGTCATGTATCCTATTGATGGGAATGTGTTTTTGGTACCCAAT
66 TCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTA-CCAAT
* * * * * *
225257 CTTGAAAAGAAAGGAGATTGCTACAAGAATCGATGCTTGTATTATTTATGGCATGAAATTTGATT
130 CTTGAAAAGAATGGAGATTGTTACAAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATT
** * * *
225322 TTAAGGAAAATAAGGGCAAAGAAAAGATTTCCAAGCAAAA-AAAATCGTAAATATCATTTATCCT
195 TTAAGGAAAATAA-GGCAAAGAAAAGATTTTGATGCAAAAGAAAATCATCAATATCATTTATCCT
* * * * *
225386 AATGAGGAGAATGTGCTCATTGTGCCTAATCCCAAAATGAATGAAGGTCGTTACTAGAATCCATG
259 AATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* * *
225451 TTAGTCTTATTTGAGGCATGAACTTAGACTTTACAAACATTGGTGGGAAAAAGGCCTTTCTTGTG
324 TTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGGCCTTTCTTGTG
* * * *
225516 AAAGCAAAACATCAATATCGCGTATTCAAAAGAGAAGACTATGTTTATGGTGCCTAATCTTGAAA
389 AAACCAAAACATCAATATCGCGTATTCTAAAGAGAAGACTATATTTATGGTGCCTAATCCTGAAA
* * *
225581 AGAATGAGGGTTAGTTTGACCATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATAAA
454 AGAATGGGGGTTAGTTTGACCATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAA
* *
225646 AAACGGTGGAGAA-AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGATG
519 AAACGGTGGA-AAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCATATTGAAG
* * ** * * *
225710 GGAAAGTGTTTTTGGTTCCCAAAATTGAAAAGAATGGAGACTATTACGAGAATCGATGCTTG-TC
583 GGAATGTGTTTTTGGTACCCAATCTTGGAAAGAATGGAGACTGTTATGAGAATCGATGCTTGCT-
* * * **
225774 TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGAGCAAAGGAAAGATTTTGATA-CAAAAG
647 TTATTTAAGGGATGAACCTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCA-AGCAAAAG
* * *
225838 AAAATCGTCAATATCATTTCTCCTAATGAGGAGAATATGCTTATAGTGCCTAATCACAAAATGAA
711 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAA
* * * * * * *
225903 GGAAGATCATTACTATAATCAATGTTTGTCTTATTTGAGGCATGAACATAGACTTTACAAAAATT
776 TGAAGATCACTACTAGAATCCATGTTAGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATT
* * * *
225968 GGTCGGAAAAAGGCCTTTCTTGTGAAACCAAAACATCAATATCGCGTATTCTAAAGCGAAGACTA
841 GGTGGGAAAAAGGCCCTTCTTGCGAAACCAAAACATCAATATCGCGTATTCTAAAGAGAAGACTA
* * * * *
226033 TGTTTATGGTGTCTAATCCAGAAAAGAATGGGGATTAGATTGACAA
906 TGTTTATGGTGCCTAATCCTGAAAAGAATGGGGGTTAGTTTGACCA
* * * * * * *
226079 TTCCTGTTTGTCTTATTTAAGAGACAAACTTTGTTTTCATAAAAAACGGTGCAAGGAAAAGCTTT
1 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCTTT
** * * * * * *
226144 TAATGCGACACCGAAGCATCAATGTCGTGTATCCTATTGATGAGAATGTGTTTTTAGTAACCGAT
66 TCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGT-ACCAAT
*
226209 CTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATT
130 CTTGAAAAGAATGGAGATTGTTACAAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATT
*
226274 TTAAGGAAAATAAGGCAAAGAAAAAATTTTGATGCAAAAGAAAATCATCAATATCATTTATCCTA
195 TTAAGGAAAATAAGGCAAAGAAAAGATTTTGATGCAAAAGAAAATCATCAATATCATTTATCCTA
* *
226339 ATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAAGGAATGAAGATCATTACTATAATCCATGT
260 ATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
* *
226404 TTGTCTCATTTGAGGCATGAACATAGACTTTACAAAAATTAGTGGGAAAAAGGCCTTTCTTGTGA
325 TTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGGCCTTTCTTGTGA
* * *
226469 AACCAAAACATCAATATCGCATATTCTAAAGAGAAGACTCTATGTATGGTGCCTAATCCTGAAAA
390 AACCAAAACATCAATATCGCGTATTCTAAAGAGAAGACTATATTTATGGTGCCTAATCCTGAAAA
* * *
226534 GAATGGGGGTTAGTTTGGCCATTCATGTTTGTCTTTTTTAAGAGACAAACTTTAATTCCATCAAA
455 GAATGGGGGTTAGTTTGACCATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAA
* * *
226599 AACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAAT-TCGTGTATCCTACTGAAGGG
520 AACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCATATTGAAGGG
* * * *
226663 AATGTGTTTGTGGTACCCAATGTTGGAAAGAATGGAGACTGTTATGAGAATTGATGCTTGCCTTA
585 AATGTGTTTTTGGTACCCAATCTTGGAAAGAATGGAGACTGTTATGAGAATCGATGCTTGCTTTA
* * *
226728 TTTAAGGGATTAACTTTGATTTTAAGGAAAATAGGGCAAATAAAAGATTTCCAAGCAAAAGAAAA
650 TTTAAGGGATGAACCTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCAAGCAAAAGAAAA
* * * *
226793 TCTTCAATATCATTTATCGTAATGAGGAGAATGCGCTTATAGTGCCTAATCCCAAAATGAATGAA
715 TCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAA
* * * *
226858 GATCATTACTAGAATCCATGTTAGTCTCATTTGAGACACGAACTTAGACTTTACAAAAATTTGTG
780 GATCACTACTAGAATCCATGTTAGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTG
* * * * *
226923 GGAAAAATGCCCTTCCTGCGAAACCAAAACATCAATATCGCGTATTTTAAAGAGAAGACTCTATT
845 GGAAAAAGGCCCTTCTTGCGAAACCAAAACATCAATATCGCGTATTCTAAAGAGAAGACTATGTT
*
226988 TATGGTGCCTAATCCTGAAAACAATGGGGGTTAGTTTGACCA
910 TATGGTGCCTAATCCTGAAAAGAATGGGGGTTAGTTTGACCA
* * **
227030 TTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTAT-AAAATATGGTAAAAAGAAAAGCTT
1 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAA-ATGGTGGAAAGAAAAGCTT
* *
227094 TTCTTGCGACACCGAAGCATCAATGTGATGTATCCTATTGAAGGGAATGTGTTTTTGGTACCCAA
65 TTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTA-CCAA
* * *** * *
227159 TCTTGGAAAGAATAGAGATTGTTATGGGAATCGATGCTTGTCTTATTTAGGGGATGAACCTTGAT
129 TCTTGAAAAGAATGGAGATTGTTACAAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGAT
* *
227224 TTTAAGGAAAATAAGGCAAAGAAAAGATTTCT-ATGCAAGAGAAAATCATAAATATCATTTATAG
194 TTTAAGGAAAATAAGGCAAAGAAAAGATTT-TGATGCAAAAGAAAATCATCAATATCATTTAT--
* * ** * *
227288 CACCTAGTGAGCAGAATGTGCTTATAGCACCAAATTACAAAATGAATGAAGATCATTACTAGAAT
256 --CCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* * *
227353 CCATGTTTGTCTTATTTGAGGCATGAACTTATACTTTACAAAAATTGGTGGGAAAAAGGCTTTTC
319 CCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGGCCTTTC
* *
227418 TTGTGAAACCAAAACATCAATATCGCGTATTCTAAAGAGAAGACTATGTTTATGGTGCCTATTCC
384 TTGTGAAACCAAAACATCAATATCGCGTATTCTAAAGAGAAGACTATATTTATGGTGCCTAATCC
*
227483 TGAAAAGAATGGAGGTTAGTTTGACCATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCC
449 TGAAAAGAATGGGGGTTAGTTTGACCATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCC
* * * * *
227548 GTCAAAATCGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAGGAATCAATGTCATGTATTATATT
514 ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCATATT
* * * *
227613 GAAGGGAATGTGTTTTTGGTACCCAATCTTGGAAGGAATGGAGATTGTTGTGGGAATCGATGCTT
579 GAAGGGAATGTGTTTTTGGTACCCAATCTTGGAAAGAATGGAGACTGTTATGAGAATCGATGCTT
* * * *
227678 GTCTTT-TTTAAGCGATGGACCTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAA
644 G-CTTTATTTAAGGGATGAACCTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCAAGCAA
* * * *
227742 AAGAAAATCATCAATATCGTTTATCCTAGTGAAGAGAATGTGCTTATAGCGCCTAATCACAAAAT
708 AAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAAT
* * * *
227807 GAATGAAGATCACCACTAGAATCCATGTTTA-TCTCATTAGAAGCATGAACTTAGAGTTTACAAA
773 GAATGAAGATCACTACTAGAATCCATG-TTAGTCTCATTTGAGGCATGAACTTAGACTTTACAAA
* *
227871 CATTGGTGGGAAAAAGGCCCTTCTTGTGAAACCAAAACATCAATATCGCGTATTCTAAAGAGAAG
837 AATTGGTGGGAAAAAGGCCCTTCTTGCGAAACCAAAACATCAATATCGCGTATTCTAAAGAGAAG
* * * *
227936 ACAATGTTTACGGTGCCTAATCCAGAAAAGAATGGGGGTTAGTTTGTCCA
902 ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGGTTAGTTTGACCA
*
227986 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAA-ACAAAGCTT
1 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAAGA-AAAGCTT
* * * *
228050 TTCTTGCGACATCAAAGCATCAGTATCATGTATCCTATTGAAGGG-ATCGTGTTTTTGTTACCAA
65 TTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAAT-GTGTTTTTGGTACC-A
228114 ATCTTGAAAAGAA
128 ATCTTGAAAAGAA
228127 GATCATTGAT
Statistics
Matches: 4329, Mismatches: 534, Indels: 79
0.88 0.11 0.02
Matches are distributed among these distances:
949 53 0.01
950 285 0.07
951 1687 0.39
952 881 0.20
953 4 0.00
955 287 0.07
956 450 0.10
957 120 0.03
958 441 0.10
959 121 0.03
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.31
Consensus pattern (951 bp):
TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCTTT
TCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTACCAATC
TTGAAAAGAATGGAGATTGTTACAAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTT
TAAGGAAAATAAGGCAAAGAAAAGATTTTGATGCAAAAGAAAATCATCAATATCATTTATCCTAA
TGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTT
TGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGGCCTTTCTTGTGAA
ACCAAAACATCAATATCGCGTATTCTAAAGAGAAGACTATATTTATGGTGCCTAATCCTGAAAAG
AATGGGGGTTAGTTTGACCATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAA
ACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCATATTGAAGGGA
ATGTGTTTTTGGTACCCAATCTTGGAAAGAATGGAGACTGTTATGAGAATCGATGCTTGCTTTAT
TTAAGGGATGAACCTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCAAGCAAAAGAAAAT
CATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAG
ATCACTACTAGAATCCATGTTAGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGG
GAAAAAGGCCCTTCTTGCGAAACCAAAACATCAATATCGCGTATTCTAAAGAGAAGACTATGTTT
ATGGTGCCTAATCCTGAAAAGAATGGGGGTTAGTTTGACCA
Found at i:226380 original size:159 final size:157
Alignment explanation
Indices: 225737--226425 Score: 398
Period size: 159 Copynumber: 4.3 Consensus size: 157
225727 CCCAAAATTG
*
225737 AAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAA
1 AAAAGAATGGAGATTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAA
* * * * * * *
225802 GGAAAATAGAGCAAAGGAAAGATTTTGATACAAAAGAAAATCGTCAATATCATTTCTCCTAATGA
66 -GAAAATAGAGCAAAGAAAAAATTTTGATGCAAAACAAAATCATCAATATCATGTATCCTAATGA
225867 GGAGAATATGCTTATAGTGCCTAATCAC
130 GGAGAATATGCTTATAGTGCCTAATCAC
* * * * * * * * * *
225895 AAAATGAA-GGAAGATCATTACTATAATCAATGTTTGTCTTATTTGAGGCATGAACATAGACTTT
1 AAAA-GAATGG-AGATTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT
* * * * **
225959 ACA-AAAATTG-GTC--GGAAAAAGGCCTTTCTTG-TG-AAACCAAAA-CATCAATATCGCGTAT
64 A-AGAAAATAGAG-CAAAGAAAAA----ATT-TTGATGCAAAACAAAATCATCAATATCATGTAT
* * * * * * * * *
226017 TCTAAAGCGAAGACTATGTTTATGGTGTCTAATCCAG
122 CCTAATGAGGAGAATATGCTTATAGTGCCTAAT-CAC
* * * * * **
226054 AAAAGAATGGGGATTAGATTGAC-A-ATTC-CTGTTTGTCTTATTTAAGAGACAAACTTTG-TTT
1 AAAAGAATGGAGATT--ATT-ACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTT
* ** * * ** * * * ** * * *
226115 TCATAAAAAACGGTGCAAGGAAAAGCTTTTAATGCGACACCGAAGCATCAATGTCGTGTATCCTA
63 T-A-AGAAAATAGAGCAAAGAAAAAATTTTGATGCAAAACAAAATCATCAATATCATGTATCCTA
* * * * * * * **
226180 TTGATGAGAATGTGTTTTTAGTAACC-GATCTTG
126 ATGAGGAGAATATGCTTATAGT-GCCTAATC-AC
*
226213 AAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAA
1 AAAAGAATGGAGATTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAA
* *
226278 GGAAAATA-AGGCAAAGAAAAAATTTTGATGCAAAAGAAAATCATCAATATCATTTATCCTAATG
66 -GAAAATAGA-GCAAAGAAAAAATTTTGATGCAAAACAAAATCATCAATATCATGTATCCTAATG
*
226342 AGGAGAATGTGCTTATAGTGCCTAATCAC
129 AGGAGAATATGCTTATAGTGCCTAATCAC
* * * * * * * * *
226371 AAAAGGAATGAAGATCATTACTATAATCCATGTTTGTCTCATTTGAGGCATGAAC
1 AAAA-GAATGGAGATTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAAC
226426 ATAGACTTTA
Statistics
Matches: 384, Mismatches: 115, Indels: 63
0.68 0.20 0.11
Matches are distributed among these distances:
156 8 0.02
157 11 0.03
158 94 0.24
159 246 0.64
160 14 0.04
161 11 0.03
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.30
Consensus pattern (157 bp):
AAAAGAATGGAGATTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAA
GAAAATAGAGCAAAGAAAAAATTTTGATGCAAAACAAAATCATCAATATCATGTATCCTAATGAG
GAGAATATGCTTATAGTGCCTAATCAC
Found at i:228394 original size:313 final size:313
Alignment explanation
Indices: 227823--228439 Score: 828
Period size: 313 Copynumber: 2.0 Consensus size: 313
227813 AGATCACCAC
* * *
227823 TAGAATCCATGTTTATCTCATTAGAAGCATGAACTTAGAGTTTACAAACATTGGTGGGAAAAAGG
1 TAGAATCCATATTTATCTCATTAGAAGCACGAACTTAGACTTTACAAACATTGGTGGGAAAAAGG
* *** * *
227888 CCCTTCTTGTGAAACCAAAACATCAATATCGCGTATTCTAAAGAGAAGACAATGTTTACGGTGCC
66 CCATTCTTCCAAAACCAAAACATCAATATCACGTATCCTAAAGAGAAGACAATGTTTACGGTGCC
* * * * * * *
227953 TAATCCAGAAAAGAATGGGGGTTAGTTTGTCCATTCATGTTTGTCTTATTTAAGAGACAAACTTT
131 GAATCCAGAAAAGAATGGGGATTAATATGACCATTCAAGTTTGTCTTACTTAAGAGACAAACTTT
* *
228018 GATTCCATCAAAAACGGTGGAAAACAAAGCTTTTCTTGCGACATCAAAGCATCAGTATCATGTAT
196 GATTCCATCAAAAACGGTGGAAAACAAAGCTTTTCTTGCGACACCAAAGCATCAATATCATGTAT
228083 CCTATTGAAGGG-ATCGTGTTTTT-GTTACCAAATCTTGAAAAGAAGATCATTGA
261 CCTATTGAAGGGAAT-GTGTTTTTGGTT-CCAAATCTTGAAAAGAAGATCATTGA
* * * * *
228136 TAGAATCCATATTTGTCTGATTTGAGGCACGAACTTAGACTTTACAATA-ATTGGTGGGAAAAAT
1 TAGAATCCATATTTATCTCATTAGAAGCACGAACTTAGACTTTACAA-ACATTGGTGGGAAAAAG
* * * * * *
228200 GCCATTCTTCCAAAATCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGC
65 GCCATTCTTCCAAAACCAAAACATCAATATCACGTATCCTAAAGAGAAGACAATGTTTACGGTGC
* *
228265 CGAATCCTGAAAAGAATGGGGATTAATATGACTATTCAAGTTTGTCTTACTTAAGAGACAAACTT
130 CGAATCCAGAAAAGAATGGGGATTAATATGACCATTCAAGTTTGTCTTACTTAAGAGACAAACTT
* * ** *
228330 TGATTCCATCAAAAATGGTGGAAAGA-AAAGCTTTTCTTGCGACGCCAAAGTGTCAATGTCATGT
195 TGATTCCATCAAAAACGGTGGAAA-ACAAAGCTTTTCTTGCGACACCAAAGCATCAATATCATGT
* *
228394 ATCCTATTGATGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAA
259 ATCCTATTGAAGGGAATGTGTTTTTGGTTCCAAATCTTGAAAAGAA
228440 TGGAGACTGT
Statistics
Matches: 262, Mismatches: 38, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
313 255 0.97
314 7 0.03
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31
Consensus pattern (313 bp):
TAGAATCCATATTTATCTCATTAGAAGCACGAACTTAGACTTTACAAACATTGGTGGGAAAAAGG
CCATTCTTCCAAAACCAAAACATCAATATCACGTATCCTAAAGAGAAGACAATGTTTACGGTGCC
GAATCCAGAAAAGAATGGGGATTAATATGACCATTCAAGTTTGTCTTACTTAAGAGACAAACTTT
GATTCCATCAAAAACGGTGGAAAACAAAGCTTTTCTTGCGACACCAAAGCATCAATATCATGTAT
CCTATTGAAGGGAATGTGTTTTTGGTTCCAAATCTTGAAAAGAAGATCATTGA
Found at i:228399 original size:159 final size:157
Alignment explanation
Indices: 227903--228874 Score: 485
Period size: 158 Copynumber: 6.2 Consensus size: 157
227893 CTTGTGAAAC
* ** * * * * * *
227903 CAAAACATCAATATCGCGTATTCTAAAGAGAAGACAATGTTTACGGTGCCTAATCCAGAAAAGAA
1 CAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCAAATCCTGAAAAGAA
* * * * * *
227968 TGGGGGTTAGTTTGTCCATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAAC
66 TGGGGATTAATATG-ACATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAAT
228033 GGTGGAAAACAAAGCTTTTCTTGCGACAT
130 GGTGGAAAA-AAAGCTTTTCTTGCGACAT
* * * * * * * *
228062 CAAAGCATCAGTATCATGTATCCTATTGA-AGGGA-TCGTGTTTTTGTTACCAAATCTTGAAAAG
1 CAAAGCATCAATATCATGTATCCTAATGAGA-AGACT-ATGTTTATGGTGCCAAATCCTGAAAAG
*** * * * * * * *
228125 AA-GATCATTGATA-GA-ATCCATA-TTTGTCTGATTTGAG-GCACGAACTTAGACTT-TA-CAA
64 AATGGGGATTAATATGACATTCA-AGTTTGTCTTATTTAAGAG-ACAAACTTTGA-TTCCATCAA
* * * ** * * *
228183 TAATTGGTGGGAAAAATGCCATTCTTCCAAAAT
126 -AAATGGTGGAAAAAAAGCTTTTCTTGCGACAT
*
228216 CAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCGAATCCTGAAAAGAA
1 CAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCAAATCCTGAAAAGAA
*
228281 TGGGGATTAATATGACTATTCAAGTTTGTCTTACTTAAGAGACAAACTTTGATTCCATCAAAAAT
66 TGGGGATTAATATGAC-ATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAAT
**
228346 GGTGGAAAGAAAAGCTTTTCTTGCGACGC
130 GGTGGAAA-AAAAGCTTTTCTTGCGACAT
** * * * * * * * * *
228375 CAAAGTGTCAATGTCATGTATCCTATTGATG-GGAATGTGTTTTTGGTTCCCAATCTTGAAAAGA
1 CAAAGCATCAATATCATGTATCCTAATGA-GAAGACTATGTTTATGGTGCCAAATCCTGAAAAGA
* * ** * * * * * ** * **
228439 ATGGAGACTGTTATGAGAATCGATGTTTGTCTTATTTATGGGATGAACTTTGATGT-TATGGAAA
65 ATGGGGATTAATATGACATTC-AAGTTTGTCTTATTTAAGAGACAAACTTTGAT-TCCATCAAAA
*** ** * *
228503 ATAAAGGCAAAGAAAATATTTCCTTGC-A-AA
128 ATGGTGG-AAA-AAAAGCTTTTCTTGCGACAT
* * * * * * * *
228533 AAAATCATCAATATCATTTATCCTAATGAGAAGAATGTGCTTATAGTGCCTAATCAC--AAAATG
1 CAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCAAATC-CTGAAAA-G
** * * * * * * * * * * *
228596 AATGAAGATCATTACTAGA-ATCCATGTTGGTCTCATTT-GGTGCACGAACTTAGACTT-TA-CA
64 AATGGGGATTAATA-T-GACATTCAAGTTTGTCTTATTTAAGAG-ACAAACTTTGA-TTCCATCA
* ** * ** *
228657 AAAATTAGTGGGGAAAATGCCATTCTTGCTA-AT
125 AAAA-TGGTGGAAAAAAAGCTTTTCTTGCGACAT
* *
228690 GCAACA-CATCAATATCATGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAG
1 -CAA-AGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCAAATCCTGAAAAG
* * *** * *
228754 AATGGGGATTAGTATGGCTATTCGTTTTTGTCGTATTTATGAGACAAACTTTGATTCCATCAAAA
64 AATGGGGATTAATATGAC-ATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAA
* * *
228819 ACGGTGGAAAGAAACA-TTTTTCTTGCGACAC
128 ATGGTGGAAA-AAA-AGCTTTTCTTGCGACAT
*
228850 CAAAGCATCAATGTCATGTATCCTA
1 CAAAGCATCAATATCATGTATCCTA
228875 TTGAAGGGAA
Statistics
Matches: 592, Mismatches: 178, Indels: 86
0.69 0.21 0.10
Matches are distributed among these distances:
154 69 0.12
155 46 0.08
156 14 0.02
157 22 0.04
158 210 0.35
159 210 0.35
160 21 0.04
ACGTcount: A:0.34, C:0.15, G:0.19, T:0.31
Consensus pattern (157 bp):
CAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCAAATCCTGAAAAGAA
TGGGGATTAATATGACATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATG
GTGGAAAAAAAGCTTTTCTTGCGACAT
Found at i:229390 original size:439 final size:443
Alignment explanation
Indices: 228564--230620 Score: 2287
Period size: 439 Copynumber: 4.5 Consensus size: 443
228554 CCTAATGAGA
*
228564 AGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTGGTCT
1 AGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCT
* * * **
228629 CATTT-GGTGCACGAACTTAGACTTTACAAAAATTAGTGGGGAAAATGCCATTCTTGCTAATGCA
66 CATTTAAG-GCACGAACTTAGACTTTACAAAAATTAGTGGGAAAAATGCCTTTCTTG-TAAACCA
228693 ACA-CATCAATATCATGTATCCTAATGAGAA-AACTATGTTTATGGTGCCTAATCCTGAAAAGAA
129 A-AGCATCAATATCATGTATCCTAATGAGAAGAACTATGTTTATGGTGCCTAATCCTGAAAAGAA
* * * * *
228756 TGGGGATTAGTATGGCTATTCGTTTTTGTCGTATTTATGAGACAAACTTTGATTCCATCAAAAAC
193 TGGGGATTAGTATGGCTATTCATGTTTATCTTATTTAAGAGACAAACTTTGATTCCATCAAAAAC
*
228821 GGTGGAAAGAAACA-TTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAA
258 GGTGGAAAGAAA-AGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAA
* * * *
228885 GATGTTTTTAGCTCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATT
322 G-TGTTTTTGGCTCCCAATCTTGAAAAGAATGGAAACTGTTACGAGAATCGATGCTTGTCTTATT
* *
228950 T-AGGGTATGAACTTTGGTTTTATGGAAACTAAGGCGAAGAAAAGATTTCCATG-C-A-
386 TAAGGG-ATGAACTTTGATTTTATGGAAAATAAGGCGAAGAAAAGATTTCCATGACAAG
* *
229005 A-AA-GTGCTTATATTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCC
1 AGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCT
*
229068 CATTTAAGGCACGAACTTAGACTTTACAAAAATTAGTGGGAAAAATGCCTTTCTTGTGAAACCAT
66 CATTTAAGGCACGAACTTAGACTTTACAAAAATTAGTGGGAAAAATGCCTTTCTTGT-AAACCAA
* *
229133 AGCATCAATATCATGTATCCTAAAT-AGAAGAACT-TATTTATGGTGCCGAATCCTGAAAAGAAT
130 AGCATCAATATCATGTATCCT-AATGAGAAGAACTATGTTTATGGTGCCTAATCCTGAAAAGAAT
* * *
229196 GGGGATTAGTATGACTATTCATGTTTATCTTACTTAACAGACAAACTTTGATTCCATCAAAAACG
194 GGGGATTAGTATGGCTATTCATGTTTATCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACG
* *
229261 GTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCGATTGATGGGAATG
259 GTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAA-G
* * * *
229326 TGTTTTTGGTTCCCAATCTTGAAAAGAATGGAAACTGTTACAAGAACCGATGCTTGTGTTATTTA
323 TGTTTTTGGCTCCCAATCTTGAAAAGAATGGAAACTGTTACGAGAATCGATGCTTGTCTTATTTA
*
229391 AGGGATGAACTTTGATTTTATGGAAAATAAGG-GTAAAGAAAAGATTTCCATG-CAAA
388 AGGGATGAACTTTGATTTTATGGAAAATAAGGCG--AAGAAAAGATTTCCATGACAAG
* * * *
229447 AGAA-AT-CATCAATA-T-CATCAATATCACAAAATGAATGAAGATCATGACTAGAATCCATGTT
1 AGAATGTGC-T-TATAGTGC--CTA-ATCACAAAATGAATGAAGATCATTACTAGAATCCATGTT
* * * * * *
229508 AGTTTCATTTGAGGCAGGAACTTAGATTTTACAAAAATTAGTGGGAAAAATGCCTTTCTTGCAAA
61 TGTCTCATTTAAGGCACGAACTTAGACTTTACAAAAATTAGTGGGAAAAATGCCTTTCTTG-TAA
* * * *
229573 ACCAAAGCATCAATATCACGTATCTTAATGAGAAG-ACTATGTTTTTGGTGCCTAATCTTGAAAA
125 ACCAAAGCATCAATATCATGTATCCTAATGAGAAGAACTATGTTTATGGTGCCTAATCCTGAAAA
* * * * *
229637 GAATGGGGATTAGTATGGCTACTCATTTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAAA
190 GAATGGGGATTAGTATGGCTATTCATGTTTATCTTATTTAAGAGACAAACTTTGATTCCATCAAA
* *
229702 AACGGTGGAAAGAAAAGCCTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAA-GG
255 AACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGG
* * ** * *
229766 AATTGTGTTTTAGGTTCCCAATCCTTG-AAACTAT-GAAGACTGTTAGGAGAATCGATGCTTATC
320 AA--GTGTTTTTGGCTCCCAAT-CTTGAAAAGAATGGAA-ACTGTTACGAGAATCGATGCTTGTC
* * * *
229829 TTATTTAAGGGATGAACTTTGATTTTCTAGAAACTAAGGGCAAAGAAAAGATTTCCATGCAAAAA
381 TTATTTAAGGGATGAACTTTGATTTTATGGAAAATAA-GGCGAAGAAAAGATTTCCATG------
229894 AAAAAATTAATATCATTTATCCTAATGAGG
439 ------------------A--C--A--A-G
229924 AGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCT
1 AGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCT
* * * * *
229989 CATTTGAGGTACAAACTTAGACTTTACAAAAATTAGTTGGAAAAATGCCATTCTTGCTAAACCAA
66 CATTTAAGGCACGAACTTAGACTTTACAAAAATTAGTGGGAAAAATGCCTTTCTTG-TAAACCAA
* *
230054 AACATCAATATCACGTATCCTAATGAGAA-AACTATGTTTATGGTGCCTAATCCTGAAAAGAATG
130 AGCATCAATATCATGTATCCTAATGAGAAGAACTATGTTTATGGTGCCTAATCCTGAAAAGAATG
* * * *
230118 GGGATTAGTATGGCTATTCGT-TATTATCTTATTTATGAGATAAACTTTGATTCCATCAAAAATG
195 GGGATTAGTATGGCTATTCATGT-TTATCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACG
* * * *
230182 GTGGAAATAAACGCTTTTCTTGCGACA-CAAAGTATCAATGTCATGTATCCTATTGAAGGGACAA
259 GTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGA-AG
* * * *
230246 TGTTTTTGGCTCCCAATCTTAAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCCTATTTA
323 TGTTTTTGGCTCCCAATCTTGAAAAGAATGGAAACTGTTACGAGAATCGATGCTTGTCTTATTTA
* *
230311 GGGGATGAACTTTGATTTTATGGAAAATAAGGTGAAGAAAAGATTTCCATGCAAAAGAAAATCAT
388 AGGGATGAACTTTGATTTTATGGAAAATAAGGCGAAGAAAAGATTTCCAT------G--------
*
230376 CAATATCATTTCTCCTAATA
439 -------A------C-AA-G
230396 AGGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTC
1 A-GAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTC
* * *
230461 CCATTTAAGGCACGAACTTAGACATTACAAAAATTAGTGGGAAAAATGCCTTTCTCGTGAAACCA
65 TCATTTAAGGCACGAACTTAGACTTTACAAAAATTAGTGGGAAAAATGCCTTTCTTGT-AAACCA
* * *
230526 AAGCGTCAATATCATGTATCCTAAAT-AGAAGAAC-ATGTTTATGGTGCCGAATCCTAAAAAGAA
129 AAGCATCAATATCATGTATCCT-AATGAGAAGAACTATGTTTATGGTGCCTAATCCTGAAAAGAA
* *
230589 TAGGGATTAGTATGACTATTCATGTTTATCTT
193 TGGGGATTAGTATGGCTATTCATGTTTATCTT
230621 TGATGAAAAC
Statistics
Matches: 1386, Mismatches: 147, Indels: 134
0.83 0.09 0.08
Matches are distributed among these distances:
438 4 0.00
439 359 0.26
440 33 0.02
441 2 0.00
442 3 0.00
443 5 0.00
444 18 0.01
445 353 0.25
446 6 0.00
471 8 0.01
472 4 0.00
473 195 0.14
474 30 0.02
475 106 0.08
476 244 0.18
477 10 0.01
478 3 0.00
479 2 0.00
480 1 0.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (443 bp):
AGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCT
CATTTAAGGCACGAACTTAGACTTTACAAAAATTAGTGGGAAAAATGCCTTTCTTGTAAACCAAA
GCATCAATATCATGTATCCTAATGAGAAGAACTATGTTTATGGTGCCTAATCCTGAAAAGAATGG
GGATTAGTATGGCTATTCATGTTTATCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGT
GGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAAGTGT
TTTTGGCTCCCAATCTTGAAAAGAATGGAAACTGTTACGAGAATCGATGCTTGTCTTATTTAAGG
GATGAACTTTGATTTTATGGAAAATAAGGCGAAGAAAAGATTTCCATGACAAG
Found at i:229702 original size:445 final size:444
Alignment explanation
Indices: 228585--230620 Score: 2124
Period size: 445 Copynumber: 4.5 Consensus size: 444
228575 ATAGTGCCTA
*
228585 ATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTGGTCTCATTTG-GTGCACGAACTTAG
1 ATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAG-GCACGAACTTAG
* ** *
228649 ACTTTACAAAAATTAGTGGGGAAAATGCCATTCTTGCTAATGCAACA-CATCAATATCATGTATC
65 ACTTTACAAAAATTAGTGGGAAAAATGCCATTCTTGCTAAACCAA-AGCATCAATATCACGTATC
*
228713 CTAATGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGGCTATTCG
129 CTAATGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGGCTATTCA
* * * *
228778 TTTTTGTCGTATTTATGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAACA-TTTTTCT
194 TTTTTATCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAA-AGCTTTTCT
*
228842 TGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAAGATGTTTTTAGCTCCCAATCTT
258 TGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAAG-TGTTTTTGGCTCCCAATCTT
* * * *
228907 GAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTT-AGGGTATGAACTTTGGTTTT
322 GAAAAGAATGGAAACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGG-ATGAACTTTGATTTT
* * *** *
228971 ATGGAAACTAAGGCG--AAGAAAAGATTTCCATGCAAAAG---TGC-T-TATATTGCCTA-
386 ATGGAAAATAAGG-GTAAAGAAAAGATTTCCATGCAAAAGAAAT-CATCAATATCATCAAT
* *
229024 ATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCCCATTTAAGGCACGAACTTAGA
1 ATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGA
* * *
229089 CTTTACAAAAATTAGTGGGAAAAATGCCTTTCTTG-TGAAACCATAGCATCAATATCATGTATCC
66 CTTTACAAAAATTAGTGGGAAAAATGCCATTCTTGCT-AAACCAAAGCATCAATATCACGTATCC
* * *
229153 TAAAT-AGAAGAACT-TATTTATGGTGCCGAATCCTGAAAAGAATGGGGATTAGTATGACTATTC
130 T-AATGAGAA-AACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGGCTATTC
* * *
229216 ATGTTTATCTTACTTAACAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCT
193 ATTTTTATCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* * *
229281 TGCGACACCAAAGCATCAATGTCATGTATCCGATTGATGGGAATGTGTTTTTGGTTCCCAATCTT
258 TGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAA-GTGTTTTTGGCTCCCAATCTT
* * *
229346 GAAAAGAATGGAAACTGTTACAAGAACCGATGCTTGTGTTATTTAAGGGATGAACTTTGATTTTA
322 GAAAAGAATGGAAACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA
229411 TGGAAAATAAGGGTAAAGAAAAGATTTCCATGCAAAAGAAATCATCAATATCATCAAT
387 TGGAAAATAAGGGTAAAGAAAAGATTTCCATGCAAAAGAAATCATCAATATCATCAAT
* * * *
229469 ATCACAAAATGAATGAAGATCATGACTAGAATCCATGTTAGTTTCATTTGAGGCAGGAACTTAGA
1 ATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGA
* * * *
229534 TTTTACAAAAATTAGTGGGAAAAATGCCTTTCTTGCAAAACCAAAGCATCAATATCACGTATCTT
66 CTTTACAAAAATTAGTGGGAAAAATGCCATTCTTGCTAAACCAAAGCATCAATATCACGTATCCT
* * * *
229599 AATGAGAAGACTATGTTTTTGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGGCTACTCATT
131 AATGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGGCTATTCATT
* * * *
229664 TTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCCTTTCTTGC
196 TTTATCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGC
* * *
229729 GACACCAAAGCATCAATGTCATGTATCCTAATGAA-GGAATTGTGTTTTAGGTTCCCAATCCTTG
261 GACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAA--GTGTTTTTGGCTCCCAAT-CTTG
** * * *
229793 -AAACTAT-GAAGACTGTTAGGAGAATCGATGCTTATCTTATTTAAGGGATGAACTTTGATTTTC
323 AAAAGAATGGAA-ACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA
* * * * ** * * *
229856 TAGAAACTAAGGGCAAAGAAAAGATTTCCATGCAAAAAAAAAAATTAATATCATTTATCCT
387 TGGAAAATAAGGGTAAAGAAAAGATTTCCATGCAAAAGAAATCATCAATATCA-TCA--AT
* * * ** * * * ** *
229917 AATGAGGAGAATGTGCTTATAG-TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC-CA
1 -ATCA-CAAAATG-AATGA-AGAT--C--ATTAC--TA-GAAT--CCAT-GTT--T-G--TCTCA
*** * *
229980 TGTTTGTCTCATTTGAGGTACAAACTTAGACTTTACAAAAATTAGTTGGAAAAATGCCATTCTTG
47 --TTTGAGGCA--CGA---AC----TTAGACTTTACAAAAATTAGTGGGAAAAATGCCATTCTTG
*
230045 CTAAACCAAAACATCAATATCACGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCTGA
101 CTAAACCAAAGCATCAATATCACGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCTGA
* * * *
230110 AAAGAATGGGGATTAGTATGGCTATTCGTTATTATCTTATTTATGAGATAAACTTTGATTCCATC
166 AAAGAATGGGGATTAGTATGGCTATTCATTTTTATCTTATTTAAGAGACAAACTTTGATTCCATC
* * * *
230175 AAAAATGGTGGAAATAAACGCTTTTCTTGCGACA-CAAAGTATCAATGTCATGTATCCTATTGAA
231 AAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAA
* * * *
230239 GGGACAATGTTTTTGGCTCCCAATCTTAAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTC
296 GGGA-AGTGTTTTTGGCTCCCAATCTTGAAAAGAATGGAAACTGTTACGAGAATCGATGCTTGTC
* * *
230304 CTATTTAGGGGATGAACTTTGATTTTATGGAAAATAA-GGTGAAGAAAAGATTTCCATGCAAAAG
360 TTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGTAAAGAAAAGATTTCCATGCAAAAG
230368 AAAATCATCAATATCATTTCTCCTAATAAGGAATGTGCTTATAGTGCCT
425 -AAATCATC-A-AT-A----T-C---------A--T-C--A-A-----T
* *
230417 AATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCCCATTTAAGGCACGAACTTAG
1 -ATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAG
* * * * *
230482 ACATTACAAAAATTAGTGGGAAAAATGCCTTTCTCG-TGAAACCAAAGCGTCAATATCATGTATC
65 ACTTTACAAAAATTAGTGGGAAAAATGCCATTCTTGCT-AAACCAAAGCATCAATATCACGTATC
* * * *
230546 CTAAAT-AGAAGAAC-ATGTTTATGGTGCCGAATCCTAAAAAGAATAGGGATTAGTATGACTATT
129 CT-AATGAGAA-AACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGGCTATT
*
230609 CATGTTTATCTT
192 CATTTTTATCTT
230621 TGATGAAAAC
Statistics
Matches: 1331, Mismatches: 175, Indels: 148
0.80 0.11 0.09
Matches are distributed among these distances:
438 4 0.00
439 344 0.26
440 36 0.03
442 1 0.00
443 2 0.00
444 19 0.01
445 373 0.28
446 6 0.00
448 1 0.00
449 3 0.00
450 5 0.00
451 3 0.00
452 2 0.00
453 1 0.00
455 4 0.00
457 1 0.00
458 4 0.00
460 2 0.00
461 2 0.00
464 1 0.00
465 2 0.00
466 1 0.00
467 6 0.00
469 2 0.00
472 3 0.00
473 119 0.09
474 33 0.02
475 107 0.08
476 191 0.14
477 5 0.00
478 1 0.00
480 2 0.00
482 6 0.00
483 3 0.00
484 2 0.00
485 1 0.00
486 1 0.00
488 2 0.00
489 2 0.00
491 4 0.00
492 2 0.00
493 1 0.00
494 4 0.00
496 2 0.00
497 2 0.00
498 3 0.00
499 5 0.00
500 5 0.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (444 bp):
ATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGA
CTTTACAAAAATTAGTGGGAAAAATGCCATTCTTGCTAAACCAAAGCATCAATATCACGTATCCT
AATGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGGCTATTCATT
TTTATCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGC
GACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAAGTGTTTTTGGCTCCCAATCTTGAAA
AGAATGGAAACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGA
AAATAAGGGTAAAGAAAAGATTTCCATGCAAAAGAAATCATCAATATCATCAAT
Found at i:232260 original size:12 final size:11
Alignment explanation
Indices: 232238--232313 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
232228 AGAGAAGGAA
*
232238 GAGAGAGGAGG
1 GAGATAGGAGG
232249 GATGATAGGAGG
1 GA-GATAGGAGG
*
232261 AGAGACAGGA--
1 -GAGATAGGAGG
*
232271 GAGATAGTA--
1 GAGATAGGAGG
232280 GAGATAGGAGG
1 GAGATAGGAGG
232291 GATGATAGGAGG
1 GA-GATAGGAGG
*
232303 AGAGACAGGAG
1 -GAGATAGGAG
232314 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:232270 original size:24 final size:24
Alignment explanation
Indices: 232237--232322 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
232227 AAGAGAAGGA
*
232237 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
232261 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
232279 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
232303 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
232323 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:232289 original size:42 final size:42
Alignment explanation
Indices: 232237--232346 Score: 193
Period size: 42 Copynumber: 2.6 Consensus size: 42
232227 AAGAGAAGGA
*
232237 AGAGAGAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAGT
1 AGAGAGAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAAT
*
232279 AGAGATAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAAT
1 AGAGAGAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAAT
*
232321 AGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGAGAGGAGGGATGATAGGAGGAG
232347 GAGAGAAGAA
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 64 1.00
ACGTcount: A:0.41, C:0.03, G:0.47, T:0.09
Consensus pattern (42 bp):
AGAGAGAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAAT
Found at i:238202 original size:475 final size:474
Alignment explanation
Indices: 237308--239747 Score: 3138
Period size: 475 Copynumber: 5.2 Consensus size: 474
237298 TTGTCATCAA
* * * *
237308 TCTTACTTAAGAGATAAACTTTGATTCCAT-TAAAACTAGTGGAAAGAAAAGCTTTTCTTGAGAC
1 TCTTATTTAAGAGATAAACTTTGATTCCATCAAAAAC-GGTGGAAAGAAAAGCTTTTCTTGCGAC
** *
237372 ACCAAAGCATCAATGTCATGTATCCTATTGATGGGAATGGGTTTTTGGT-TCCCAATCTTGAAAA
65 ACCAAAGCATCAATGTCATGTATCCTATTGAAAGGAATGTGTTTTTGGTAT-CCAATCTTG-AAA
* * *
237436 AGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTTTGGA
128 ACAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGA
* *
237501 AAATAAGGGTAAAGAAAAGATTTCCATGCAAAAGAAATCATC-A-AT-A-TTATCCTAATGAGGA
193 AAATAAAGGCAAAGAAAAGATTTCCATGCAAAA-AAATCATCAATATCATTTATCCTAATGAGGA
237562 GAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTGGTCTC
257 GAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTGGTCTC
* * *
237627 TTTTGAGGCACGAACTTAGACTTTACAAAAATTAGTGGGAAAAATACCTTTCTTGCAAAACCAAA
322 ATTTGAGGCACGAACTTAGACTTTACAAAAATTAGTGGGAAAAATGCCTTTCTTGCGAAACCAAA
* *
237692 ACATCAATATCACGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGG
387 ACATCAATATCATGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGG
* *
237757 GGTTAGTATGGCTATTAATTTTT
452 GATTAGTATGGCTATTAATTTTG
* *
237780 TCCTATTTTAAGAGATAAACTTTGATTCCATCAAAAACGGTGGAAAGAAACA-TTTTTCTTGCGA
1 TCTTA-TTTAAGAGATAAACTTTGATTCCATCAAAAACGGTGGAAAGAAA-AGCTTTTCTTGCGA
** *
237844 CATGAAAGCATCAATGTCATGTATCCTATTGAAACGAATGTGTTTTTGGTATCCAATCTTGAAAA
64 CACCAAAGCATCAATGTCATGTATCCTATTGAAAGGAATGTGTTTTTGGTATCCAATCTTGAAAA
* * * * **
237909 CAATGCAGATTGTTATGAGAATCGATTCTTGTCTTACTTAAGGGGCGAACTTTG-TTGTTATGGA
129 CAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATT-TTATGGA
* * *
237973 AAATAAAGGCAAAGAAAATATTTCCTTGCAAAAAAATCATTAATATCATTTATCCTAATGAGGAG
193 AAATAAAGGCAAAGAAAAGATTTCCATGCAAAAAAATCATCAATATCATTTATCCTAATGAGGAG
*
238038 AATGTGCTTATAGTGCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTGGTCTCA
258 AATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTGGTCTCA
* * * * *
238103 TTTG-GTGCACGAACTTAGACTTTACAAAAATTAGTGGGGAAAATGCCATTCTTGCTAAAGCAAC
323 TTTGAG-GCACGAACTTAGACTTTACAAAAATTAGTGGGAAAAATGCCTTTCTTGCGAAACCAAA
238167 ACATCAATATCATGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGG
387 ACATCAATATCATGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGG
*
238232 GATTAGTATGGCTATTCA---TG
452 GATTAGTATGGCTATTAATTTTG
* * * * * *
238252 T-TTA-AT-AGAGACAAACTTTGATTCCATGAAAAGCAGTGGAAAGAAAAGCTTTTCTTGTGACA
1 TCTTATTTAAGAGATAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACA
* ** * ** * *
238314 CTAAAGCATCAATGTCATGTATCCTATTGATTGGAAAGTGTTTTTGGT-TCCTAAAATAGAAAAG
66 CCAAAGCATCAATGTCATGTATCCTATTGAAAGGAATGTGTTTTTGGTATCC-AATCTTGAAAAC
* * * * * *
238378 AATGGAGACTATTATGAGAATCGATGCGTGTCTTATTTAAGTGATGAACTTTGATTTTATGGAAT
130 AATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAA
* *
238443 ATAATGG-AAAGAAAAGATTTTCATGCAAAAACAAATCATCAATATCATTTATCCTAATGAGGAG
195 ATAAAGGCAAAGAAAAGATTTCCATGC-AAAA-AAATCATCAATATCATTTATCCTAATGAGGAG
* **
238507 AATGGGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTATTCTCA
258 AATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTGGTCTCA
* *
238572 TTTGAGGCAGGAACTTAGACTTTACAAAAATTAGTGGGAAAAATGCTTTTCTTGCGAAACCAAAA
323 TTTGAGGCACGAACTTAGACTTTACAAAAATTAGTGGGAAAAATGCCTTTCTTGCGAAACCAAAA
* * *
238637 TATTAATATCACGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAAT-CTCGAAAA-ACATGG
388 CATCAATATCATGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCT-GAAAAGA-ATGG
* * * *
238700 GGAATAGAATGAG-TATTCTAGTTTG
451 GGATTAGTATG-GCTATT-AATTTTG
* * * * * *
238725 TCTTATTTGAGAGACAAACTTTAATTCTATCAAAAAACGGTGGAAAAAAAAGCTTTTCTTGTGAC
1 TCTTATTTAAGAGATAAACTTTGATTCCATC-AAAAACGGTGGAAAGAAAAGCTTTTCTTGCGAC
* * * * * *
238790 ACCCAAGCTTCAATGTCATGTCTCCTATTCAAAGGATTGTGTTTTTGGTACCCAATCTTGAAAAC
65 ACCAAAGCATCAATGTCATGTATCCTATTGAAAGGAATGTGTTTTTGGTATCCAATCTTGAAAAC
* *
238855 AATGTAGATTGTTACGAAAATCGATGCTTGTCTTATTTAAGGGATGAA-TTGTGATTTTATGGAA
130 AATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTT-TGATTTTATGGAA
* * *
238919 AAT-AAGGCAAAGAAAAGATTTCCTTGCAAAAGAAAATCATCAATATCATTTCTCTTAATGA-G-
194 AATAAAGGCAAAGAAAAGATTTCCATGC-AAA-AAAATCATCAATATCATTTATCCTAATGAGGA
* *
238981 GAATGTGCTTATAGTGCTTAATCACAAAATGAATGAAGATCATTACTAGAATCTATGTTGGTCAT
257 GAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTGGTC-T
* * *
239046 -ATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCATGCGAAACCAA
321 CATTTGAGGCACGAACTTAGACTTTACAAAAATTAGTGGGAAAAATGCCTTTCTTGCGAAACCAA
* * * *
239110 AACATCAATATCGTGTA-CCTTAATGAGAAAACTGTGTTTATGGTGCCTAATCCTAAAAAGAATA
386 AACATCAATATCATGTATCC-TAATGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAATG
* *
239174 GGGATTAGTATGACTATTCATATTTG
450 GGGATTAGTATGGCTATTAAT-TTTG
* * * * *
239200 TCTTATTCAAGAGATAAACTTTGATTCCATAAAAAATGGTGGAAAGAAAAGCCTCTCTTGCGACA
1 TCTTATTTAAGAGATAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACA
* * * * * * * *
239265 CCCAAGCATTAATGTCATATATCCTACTGAAAGGAATATGTTTTTAGCACCCAATCTTGAAAACA
66 CCAAAGCATCAATGTCATGTATCCTATTGAAAGGAATGTGTTTTTGGTATCCAATCTTGAAAACA
* * * *
239330 ATGTAGATTGTTACGAGAATCAATGCTTATCTTATTTAAGGGATCAACTTTGATTTTATGGAAAA
131 ATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAA
* * * *
239395 T-AAGGCTAAGAAAAGATTTCCATGCAAAGGGAAATCAGCAATATCATTTTCTCCTAATGA-G-G
196 TAAAGGCAAAGAAAAGATTTCCATGCAAA--AAAATCATCAATATCA-TTTATCCTAATGAGGAG
* * * *
239457 AATGTGCTTATAGTGCCTAATCACAAAATGAATGAACATCATTACTGGAATCCATTTTTGTCTCA
258 AATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTGGTCTCA
* * * * * *
239522 CTTGAGGCATGAACTTAAACTTTACAATAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAG
323 TTTGAGGCACGAACTTAGACTTTACAAAAATTAGTGGGAAAAATGCCTTTCTTGCGAAACCAAAA
* ** * * *
239587 CATCAATATCATGTATCCTAATGAGAAGACTATGTTTATACTACCGAATCCTGAAAGGAATGGGG
388 CATCAATATCATGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGG
* * *
239652 ATTAGTTTGACTTTTAATGTTTG
453 ATTAGTATGGCTATTAAT-TTTG
* * *
239675 TCTTACTTAAGAGATAAACTGTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCAACA
1 TCTTATTTAAGAGATAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACA
239740 CCAAAGCA
66 CCAAAGCA
239748 AGTATGAGTA
Statistics
Matches: 1718, Mismatches: 208, Indels: 81
0.86 0.10 0.04
Matches are distributed among these distances:
467 20 0.01
468 163 0.09
469 219 0.13
470 3 0.00
471 11 0.01
472 92 0.05
473 106 0.06
474 196 0.11
475 693 0.40
476 31 0.02
477 181 0.11
478 3 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (474 bp):
TCTTATTTAAGAGATAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACA
CCAAAGCATCAATGTCATGTATCCTATTGAAAGGAATGTGTTTTTGGTATCCAATCTTGAAAACA
ATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAA
TAAAGGCAAAGAAAAGATTTCCATGCAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
GTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTGGTCTCATTT
GAGGCACGAACTTAGACTTTACAAAAATTAGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACAT
CAATATCATGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATT
AGTATGGCTATTAATTTTG
Found at i:239963 original size:251 final size:251
Alignment explanation
Indices: 239513--239998 Score: 722
Period size: 251 Copynumber: 1.9 Consensus size: 251
239503 GGAATCCATT
*
239513 TTTGTCTCACTTGAGGCATGAACTTAAACTTTACAATAATTGGTGGGAAAAATGCCTTTCTTGCG
1 TTTGTCTCACTTGAGGCATGAACTTAAACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCG
* *
239578 AAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATACTACCGAATCCTGAAA
66 AAACCAAAACATCAATATCACGTATCCTAATGAGAAGACTATGTTTATACTACCGAATCCTGAAA
* * * * * *
239643 GGAATGGGGATTAGTTTGACTTTTAATGTTTGTCTTACTTAAGAGATAAACTGTGATTCCATCAA
131 AGAATAGGGATTAGTATGACTATTAATATTTGTCTTACTTAAGAGATAAACTGTGATTCCATAAA
* *
239708 AAACGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCAAGTATGAGTATTCATG
196 AAACGGTGAAAAGAAAAGCTTTTCATGCAACACCAAAGCAAGTATGAGTATTCATG
* *
239764 TTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCG
1 TTTGTCTCACTTGAGGCATGAACTTAAACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCG
* * * * ** * * *
239829 AAACCAAAACATCAATATCGCGTATCTTAATGAGAAGACTGTGTTTTTGGTGCCTAATCTTGAAA
66 AAACCAAAACATCAATATCACGTATCCTAATGAGAAGACTATGTTTATACTACCGAATCCTGAAA
* *
239894 AGAATAGGGATTAGTATGACTATTCATATTTGTCTTA-TTCAAGAGATAAACTTTGATTCCATAA
131 AGAATAGGGATTAGTATGACTATTAATATTTGTCTTACTT-AAGAGATAAACTGTGATTCCATAA
* *
239958 AAAACGGTGAAAAGAAAAGCTTTTCATGCGACACCTAAGCA
195 AAAACGGTGAAAAGAAAAGCTTTTCATGCAACACCAAAGCA
239999 TCAATGTCAT
Statistics
Matches: 208, Mismatches: 26, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
250 2 0.01
251 206 0.99
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.31
Consensus pattern (251 bp):
TTTGTCTCACTTGAGGCATGAACTTAAACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCG
AAACCAAAACATCAATATCACGTATCCTAATGAGAAGACTATGTTTATACTACCGAATCCTGAAA
AGAATAGGGATTAGTATGACTATTAATATTTGTCTTACTTAAGAGATAAACTGTGATTCCATAAA
AAACGGTGAAAAGAAAAGCTTTTCATGCAACACCAAAGCAAGTATGAGTATTCATG
Found at i:241785 original size:475 final size:474
Alignment explanation
Indices: 239760--244274 Score: 5658
Period size: 476 Copynumber: 9.5 Consensus size: 474
239750 TATGAGTATT
*
239760 CATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCT
1 CATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCT
* * * *
239825 TGCGAAACCAAAACATCAATATCGCGTATCTTAATGAGAAGACTGTGTTTTTGGTGCCTAATCTT
66 TGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGAC-ATGTTTATGGTGCCTAATCCT
* * * * *
239890 GAAAAGAATAGGGATTAGTATGACTATTCATATTTGTCTTATTCAAGAGATAAACTTTGATTCCA
130 GAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
* * * * * * *
239955 TAAAAAACGGTGAAAAGAAAAGCTTTTCATGCGACACCTAAGCATCAATGTCATGTATCGTATTA
195 TCAAAAACGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTG
* ** * * * * * *
240020 AAGGGAATGTGTTTTTAGCACCCAATCTTGAAAATAATGTAGATTGTTACGAGAATCAATGCTTA
260 AAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTG
* *
240085 TCTTATTTAAGGGATCAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTTAATGCAAAA
325 TCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCAAT-CAAAA
* * * *
240150 GAAAATCATCAGTATCATTTCTCCTAATGA-G-GAATGTGCTTATAATGCCTAATCACAAAATTA
389 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGA
*
240213 ATGAAGATCATTGCTAGAATC
454 ATGAAGATCATTACTAGAATC
* * * *
240234 AATGTTTGTCTCATTTGAGGCACGAACTTAGACTCTACAAAAATTGGTGAGAAAAATGACTTTCT
1 CATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCT
* * * *
240299 TGCGAAACCAAAGCATCAATA--GAAGCAT-C-AAT-----GTCATGTTTATGGTGCCTAATCCT
66 TGCGAAACCAAAACATCAATATCG-CGTATCCTAATGAGAAGACATGTTTATGGTGCCTAATCCT
* * * * ** *
240355 GAAAAGAATGGGGATTA-TATG-GCTATTCGTTTTTGTCGTATTTAAGAGATTAACTTTGATTCC
130 GAAAAGAATAGGGATTAGTATGAG-TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
240418 ATCAAAAAC-AGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAT
194 ATCAAAAACGA-TGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAT
* * *
240482 TGAAGGGAATGTGTTTTTGGTACCCAATCATGAAAA-AATGCAGACTGTTATGAGAATCGATGCT
258 TGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCT
** * * * **
240546 CATCTTATTTATGAGATGAACTTTGATTTTATGAAAAATAAGGCAAAGAAAAGATTTTCACGCAA
323 TGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGA-TTTCAATCAA
** * *
240611 AAGAAAATCATCAATATCATTCCTCCTAATG-TG-GAATGTGCCTATAGTGCCTAATCAC-AAAT
387 AAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAAT
*
240673 GAATGAAGGTCATTACTAGAATC
452 GAATGAAGATCATTACTAGAATC
* ** *
240696 CATGTTTGTC-CTATTTAAGGCTTGAACTTAGACTCTACAAAAATTGGTGGGAAAAATGCCTTTC
1 CATGTTTGTCTC-ATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTC
*
240760 TTGCGAAACCAAACCATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCC
65 TTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGAC-ATGTTTATGGTGCCTAATCC
* * * *
240825 TGAAATGAATAGGGATTAGTTTG-GCTATTCGTGTTTGTCTTATTTAAGAGACAAACTCTGATTC
129 TGAAAAGAATAGGGATTAGTATGAG-TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
* * * * * *
240889 TATCAGAAACGGTGGAAAGAAAAACTTTCCTTGCAACACCAAAGCATTAATGTCATGTATCCTAT
193 TATCAAAAACGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAT
* * * * * * * * *
240954 TGAAGAGACTGTGTTTTTGGCTCCCAATCTTGAAAACAATCGAGATTGTTACGAAAATCGATGGT
258 TGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCT
* * * *
241019 TGTCTTATTTAGGGGATTAACTTCGATTTTGA-GG--AAT----CAAAGAAAAGATTTCCAAGCA
323 TGTCTTATTTAAGGGATGAACTTTGATTTT-ATGGAAAATAAGGCAAAGAAAAGATTT-CAATCA
** * * * *
241077 AAAGAAAATCAAAAATATCATTTCTCCTTAT-AAG-GAATGTGCTTATAGTGCTTAATCACAAAA
386 AAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAA
241140 TGAATGAAGATCATTACTAGAATC
451 TGAATGAAGATCATTACTAGAATC
* * * * * * *
241164 CATGTTTGCCCCATTTGATGAATGAACTTAGACTTTACAATAATTGGTGGGAAAAATGCCTTCCT
1 CATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCT
* * * ** * * *
241229 TGAGAAACGAAAGCATCAATATCATGTATCCTAAAT-AGATGAACATGTTTATGGTGCCCAATCT
66 TGCGAAACCAAAACATCAATATCGCGTATCCT-AATGAGAAG-ACATGTTTATGGTGCCTAATCC
* *
241293 TGAAAAGAACT-GGGATTAGTATGAGTATTTAGGTTTGTCTTATTTAAGAGACAAACTTTGATTC
129 TGAAAAGAA-TAGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
* * *
241357 TATCAAAAATGATGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCATTGTCATGTATCCTAT
193 TATCAAAAACGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAT
* * * * *
241422 TGAAGGGAATGTGTTTTTGGTGCCCAATCTTGAAAAGAATGGAGATTGTTACGAAAATTGATGCT
258 TGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCT
* * * * *
241487 TGTCCTATTTAAGGGATGAACTTTGATTTTATGCAAAATAAGGAAAAGAAAAGATTTCGATTAAA
323 TGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCAATCAAA
241552 AGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATG
388 AGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATG
*
241617 AATGAAGATCATTACTAAAATC
453 AATGAAGATCATTACTAGAATC
** * * ** *
241639 CATGTTTGTCTCATTTGACACACGAACTTAGAGTTTATAAAAATTTATGGGAAAAATGCCTTTTT
1 CATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCT
* * * * * *
241704 TGTGAAACCAAAGCTTCAATATCGTGTATACTAATGAGAAGAACATGTTTATGGTGCCTAATCCA
66 TGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAG-ACATGTTTATGGTGCCTAATCCT
* * * *
241769 GAAAAGAATGGGGATTAGTATGAGTATTCATGTCTGTCTTATTTAAGAAACAAACTTCGATTCTA
130 GAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
* * * *
241834 TCAAAAAC-AGTGAAAAGAAAAGCTTTTCATGCGACACCAAAGCATCAA-GATCAGGTATCCTAC
195 TCAAAAACGA-TGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATG-TCATGTATCCTAT
* * * * * *
241897 TGAAAGGAATGTGTTTTAGGTTCCCAATCCTGAAAATAATAGAGACTGCTATGAGAATCGATGCT
258 TGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCT
* * * * * *
241962 CGTCTTATTTAAGGGATGAACTTTGATTGTAAGGAAAATAGGGCAAATAAAAGATTTCCAAGCAA
323 TGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTT-CAATCAA
* * * * *
242027 AAGAAAATCATCGATATCATTTATCATAATAAGTAGAATGTGCTCATAGTGCCTAATCACAAAAT
387 AAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAAT
* * *
242092 GAATGGAGACCATTACTAGAACC
452 GAATGAAGATCATTACTAGAATC
* * * * * *
242115 CATGTTTGTCTCATTTGAGACGCAAACTTAGACTTTATAAAAATTCGTGGGAAAAATGCCTTTCA
1 CATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCT
* * **
242180 TGCAAAACCAAAACATCAATATCGCGTATCCTAATGGGAAGAC-TGTGTCTACAGTGCCTAATCC
66 TGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACATGT-T-TATGGTGCCTAATCC
* * * *
242244 TAAAAAGAATAGGGATTAATATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCC
129 TGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
* * *
242309 ATAAAAAACGATGGAAGGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTATT
194 ATCAAAAACGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATT
* * * *
242374 GATGGGAATGTATTTTTGGTTCCCAATCTTGAAAAAAATGGAGACTGTTATGAGAATCGAAGCTT
259 GAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTT
** * * * *
242439 GTCTTATTTAAGGGACAAACTTTTATTTTCTGGAAAATAGGGCAAAGAAAAGATTCCAATGCAAA
324 GTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCAAT-CAAA
* * * *
242504 AGAAAATCATCAATATCATTTATCCTAGTGAGGAGAATGTGCATATAGTGACTAATCACAAAAAG
388 AGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATG
242569 AATGACA-ATCATTACTAGAATC
453 AATGA-AGATCATTACTAGAATC
* * *
242591 CATGTTTGTATCATTTGAGGCACGAACTTAGATTTTACAAAAATTGGTGGGAAAATTGCCTTTCT
1 CATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCT
242656 TGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT
66 TGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGAC-ATGTTTATGGTGCCTAATCCT
* *
242721 GAAAAGAATACGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
130 GAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
* * * * *
242786 TCAAAAACGATGGAAAGGAAATCTTTTCTTGTGACACCAAAGCATCATTTTCATGTATCCTATTG
195 TCAAAAACGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTG
* * * * *
242851 AAGGGAATGTGCTTTTGGTACCCAATCTTGAAAAGAATGGAGATTGTTATGAAAATCGATGTTTG
260 AAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTG
* * * * *
242916 TCCTATTTAAGGGATGAACTTTGATTTTATGCAAAATAAGGCAAAGAAAAAATTTCGATTAAAAG
325 TCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCAATCAAAAG
242981 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAA
390 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAA
243046 TGAAGATCATTACTAGAATC
455 TGAAGATCATTACTAGAATC
* * * * *
243066 CATGTTTATCTCATTTGGGGCATGAACTTACACTTTACAAAAATTGGTGGGAATAATGCCTTTCT
1 CATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCT
* * * * *
243131 TACAAAATCAAAACATCAATATCGTGTATCCTAATGAGAAGAACATGTTTATGGTGCCTAATCTT
66 TGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAG-ACATGTTTATGGTGCCTAATCCT
* * * * * * * * * * *
243196 GAGAAGAATGGGGATAAGTACGAATGTTCGTGTTTGTCTTCTTTAAAAGATAAACTTTCATTCTA
130 GAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
* * * * * * * * *
243261 TCAAAAATGGTGGAAAGAAAACCCTTTCTAGTGACACGAAAGCATCAGA-GTCAGGTATCCTAAT
195 TCAAAAACGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCA-ATGTCATGTATCCTATT
* * * * * * * *
243325 GAAGGAAATGTGTTTTAGGTTCCTAATCCTAAAAACAAGGGAGACTGTTACGAGAATCGATGCTT
259 GAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTT
* ** *
243390 GTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAAGG-AAAGAAGTGATTTCCATGCAA
324 GTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAAT-AAGGCAAAGAAAAGATTTCAAT-CAA
* * *
243454 AAGAAAATCATCAATGTCATTTATCCTAATGATGAGAACGTGCTTATAGTGCCTAATCACAAAAT
387 AAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAAT
*
243519 GAATGAAGATCGTTACTAGAATC
452 GAATGAAGATCATTACTAGAATC
* * * ***
243542 CATGTTTGTCTCATTTGAGGCATGGACATAGACTTTACAAAAATTGGTCAAAAAAATGCCTTTCT
1 CATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCT
* * ** *
243607 TGC-AAAGCCAAAACATCAATGTTGCGTATCCTAATGAGAAGATTGTGTTTATGGTGCCTAATCG
66 TGCGAAA-CCAAAACATCAATATCGCGTATCCTAATGAGAAGA-CATGTTTATGGTGCCTAATCC
* * *
243671 TGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTTTCTTATTTAAAAGACAAACTTTGATTCC
129 TGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
* * * * *
243735 ATCAAAAATGGTGGAAGGAAAAGCTTTTCTTGCGACCCCAAAGCATCAATGTCGTGTATCCTATT
194 ATCAAAAACGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATT
* * * *
243800 GATGAGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAGTGGAGACTGTTATGAGAATTGATGCTT
259 GAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTT
* *
243865 GTCTTATTTAAGGGATGAACTTAGATTTTATGGAAAATAGAGGCAAA-AAATAGATTTCCATTCA
324 GTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATA-AGGCAAAGAAA-AGATTT-CAATCA
*
243929 AAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGTCTAATCACAAAA
386 AAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAA
* *
243994 TGAATGAAGATCTTTACTAAAATC
451 TGAATGAAGATCATTACTAGAATC
*
244018 CATGTTTGTCTCATTTGAGGC-CTGAACTTACACTTTACAAAAATTGGTGGGAAAAATGCCTTTC
1 CATGTTTGTCTCATTTGAGGCAC-GAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTC
* * *
244082 TTGCGAAACCAAAACATCAACATCGTGTATCCTAATGAGAAGAACATGTTTATGGTGCCTAATCT
65 TTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAG-ACATGTTTATGGTGCCTAATCC
* * * *
244147 TGAGAAGAATGGGGACTAGTAAGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTCG-TTC
129 TGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTT-GATTC
* * * * *
244211 TATCAAAAAAGGTGGAAAGAAAAGCCTTTCTAGCGACACGAAAGCATCAATGTCATGTATCCTA
193 TATCAAAAACGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTA
244275 ATGAGGAGAA
Statistics
Matches: 3490, Mismatches: 484, Indels: 131
0.85 0.12 0.03
Matches are distributed among these distances:
461 1 0.00
462 101 0.03
463 132 0.04
464 134 0.04
465 37 0.01
466 5 0.00
467 68 0.02
468 324 0.09
469 8 0.00
470 5 0.00
471 42 0.01
472 128 0.04
473 80 0.02
474 108 0.03
475 972 0.28
476 1228 0.35
477 113 0.03
478 4 0.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (474 bp):
CATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCT
TGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACATGTTTATGGTGCCTAATCCTG
AAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
CAAAAACGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGA
AGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTGT
CTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCAATCAAAAGA
AAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAAT
GAAGATCATTACTAGAATC
Found at i:244313 original size:317 final size:317
Alignment explanation
Indices: 242986--244897 Score: 1702
Period size: 317 Copynumber: 6.0 Consensus size: 317
242976 AAAAGAAAAT
* * *
242986 CATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAG
1 CATCAATGTCATGTATCCTAATGAGGAGAATGTGCTTATAGTGTCTAATCACAAAATGAATGAAG
* * *
243051 ATCATTACTAGAATCCATGTTTATCTCATTTGGGGCATGAACTTACACTTTACAAAAATTGGTGG
66 ATCTTTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTACACTTTACAAAAATTGGTGG
* * * *
243116 GAATAATGCCTTTCTTACAAAATCAAAACATCAATATCGTGTATCCTAATGAGAAGAACATGTTT
131 GAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGAACATGTTT
* * * * * * *
243181 ATGGTGCCTAATCTTGAGAAGAATGGGGATAAGTACGAATGTTCGTGTTTGTCTTCTTTAAAAGA
196 ATGGTGCCTAATCTTGAAAAGAATGGGGAT-AGTAAGAGTATTCATGTTTGTCTTATTTAAGAGA
* * * *
243246 TAAACTTTC-ATTCTATCAAAAATGGTGGAAAGAAAACCCTTTCTAGTGACACGAAAG
260 CAAACTTTCGATTCTATCAAAAAAGGTGGAAAGAAAAGCCTTTCTAGCGACACGAAAG
* * **
243303 CATCAGA-GTCAGGTATCCTAATGAAGGA-AATGTG-TTTTAG-GTTCCTAATC-CTAAAAACAA
1 CATCA-ATGTCATGTATCCTAATG-AGGAGAATGTGCTTATAGTG-T-CTAATCAC-AAAATGAA
* * * * * * * * ** *
243363 GGGAGA-CTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA-AGGAAA
61 TGAAGATCT-TTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTACACTTTACA--AAA
*** * * ** * * *
243426 A-T-AAAGGAAAGAAGTG-ATTTCCATGC-AAAAGAAAATCATCAATGTCATTTATCCTAATGAT
123 ATTGGTGGGAAA-AA-TGCCTTT-CTTGCGAAACCAAAA-CATCAATATCGTGTATCCTAATGA-
* * * ** ** * ** * *
243487 G-AGAACGTGCTTATAGTGCCTAATC-ACAAAATGAATGAAGATCGTTACTAGAATCCATGTTTG
183 GAAGAACATGTTTATGGTGCCTAATCTTGAAAA-GAATGGGGATAG-TAAGAGTATTCATGTTTG
* * * * * * * *
243550 TCTCATTT--GAGGCATGGAC-ATAGACTT-TA-CAAAAATTGGT-CAAA-AAAATGCCTTTCTT
246 TCTTATTTAAGAGACA--AACTTTCGA-TTCTATCAAAAA-AGGTGGAAAGAAAA-GCCTTTCTA
* * *
243608 GC-AAAGCCAAAA
306 GCGACA-CGAAAG
*** * * * * * ** *
243620 CATCAATGTTGCGTATCCTAATGAGAAGATTGTGTTTATGGTGCCTAATCGTGAAAA-GAATG-G
1 CATCAATGTCATGTATCCTAATGAGGAGAATGTGCTTATAGTGTCTAATC-ACAAAATGAATGAA
* * * * * * * ** *
243683 GAT-TAGTA-TGAGTATTCATGTTTTTCTTATTTAAAAGACA--AACTTTGA-TTCCATCAAAAA
65 GATCT-TTACT-AGAATCCATGTTTGTCTCATTT--GAGGCATGAACTTACACTT-TA-CAAAAA
* * ** * * *
243743 -TGGT-GGAAGGAAAAGCTTTTCTTGCGACCCCAAAGCATCAATGTCGTGTATCCTATTGATG-A
124 TTGGTGGGAA--AAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGA-GAA
** * * * * * * * * *
243805 GAATGTGTTTTTGGTTCCCAATCTTGAAAAGAGTGGAGACT-GTTATGAGAATTGATGCTTGTCT
186 GAACATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGA-TAG-TAAGAGTATTCATGTTTGTCT
* ** * * * * * * * *
243869 TATTTAAGGGATGAAC-TTAGATTTTATGGAAAATAGAG-GCAAA-AAATAG-ATTTCCATTC-A
249 TATTTAAGAGACAAACTTTCGATTCTAT-CAAAAAAG-GTGGAAAGAAA-AGCCTTTCTA-GCGA
* * *
243929 AAAGAAAAT
310 CACG-AAAG
* *
243938 CATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGTCTAATCACAAAATGAATGAAG
1 CATCAATGTCATGTATCCTAATGAGGAGAATGTGCTTATAGTGTCTAATCACAAAATGAATGAAG
* *
244003 ATCTTTACTAAAATCCATGTTTGTCTCATTTGAGGCCTGAACTTACACTTTACAAAAATTGGTGG
66 ATCTTTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTACACTTTACAAAAATTGGTGG
*
244068 GAAAAATGCCTTTCTTGCGAAACCAAAACATCAACATCGTGTATCCTAATGAGAAGAACATGTTT
131 GAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGAACATGTTT
*
244133 ATGGTGCCTAATCTTGAGAAGAATGGGGACTAGTAAGAGTATTCATGTTTGTCTTATTTAAGAGA
196 ATGGTGCCTAATCTTGAAAAGAATGGGGA-TAGTAAGAGTATTCATGTTTGTCTTATTTAAGAGA
244198 CAAACTTTCG-TTCTATCAAAAAAGGTGGAAAGAAAAGCCTTTCTAGCGACACGAAAG
260 CAAACTTTCGATTCTATCAAAAAAGGTGGAAAGAAAAGCCTTTCTAGCGACACGAAAG
*
244255 CATCAATGTCATGTATCCTAATGAGGAGAATTTGCTTATAGTGTCTAATCACAAAATGAATGAAG
1 CATCAATGTCATGTATCCTAATGAGGAGAATGTGCTTATAGTGTCTAATCACAAAATGAATGAAG
* * *
244320 ATCTTTACTAGAATCCTTGTTTGTCCCATTTGGGGCATGAACTTACACTTTACAAAAATTGGTGG
66 ATCTTTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTACACTTTACAAAAATTGGTGG
*
244385 GAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCATGTATCCTAATGAGAAGAACATGTTT
131 GAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGAACATGTTT
* *
244450 ATGGTACCTAATCTTGAGAAGAATGGGGATTAGTATA-AGTATTCATGTTTGTCTTATTTAAGAG
196 ATGGTGCCTAATCTTGAAAAGAATGGGGA-TAGTA-AGAGTATTCATGTTTGTCTTATTTAAGAG
* * *
244514 ACAAACTTTC-ATTCTATCAAAAATGGTGGAAAGAAAAGCCTTTCTAGTGACACAAAAG
259 ACAAACTTTCGATTCTATCAAAAAAGGTGGAAAGAAAAGCCTTTCTAGCGACACGAAAG
* *
244572 CATCAATGTCATGTATCCTAATGAGAAGAATGTGCTTCTAGTGTCTAATCACAAAATGAATGAAG
1 CATCAATGTCATGTATCCTAATGAGGAGAATGTGCTTATAGTGTCTAATCACAAAATGAATGAAG
* * *
244637 ATCTTTACTAGAATCCATGTTTGTCCCATTTGGGGCATGAACTTAGACTTTACAAAAATTGGTGG
66 ATCTTTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTACACTTTACAAAAATTGGTGG
* *
244702 GAAAAATGCCTTTCTTGCG-AGCCAAAACATCAATATCGTGTATCCTAATGAGAAG-ACTGTGTT
131 GAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGAAC-ATGTT
* * * *
244765 TATGGTGCCTAATCCTGAAAAAAATGGGGAATAG-AATGAGTATTCAAGTTTGTCTTATTTGAGA
195 TATGGTGCCTAATCTTGAAAAGAATGGGG-ATAGTAA-GAGTATTCATGTTTGTCTTATTTAAGA
* * * * *
244829 GACAAACTTT-GATTCT-TTAAAAAACGGTTGAAAGAAAAGCTTTTCTTGCGACACCAAAG
258 GACAAACTTTCGATTCTATCAAAAAA-GGTGGAAAGAAAAGCCTTTCTAGCGACACGAAAG
244888 CATCAATGTC
1 CATCAATGTC
244898 TTTTTCCTAT
Statistics
Matches: 1293, Mismatches: 226, Indels: 153
0.77 0.14 0.09
Matches are distributed among these distances:
314 1 0.00
315 14 0.01
316 293 0.23
317 635 0.49
318 300 0.23
319 42 0.03
320 8 0.01
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (317 bp):
CATCAATGTCATGTATCCTAATGAGGAGAATGTGCTTATAGTGTCTAATCACAAAATGAATGAAG
ATCTTTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTACACTTTACAAAAATTGGTGG
GAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGAACATGTTT
ATGGTGCCTAATCTTGAAAAGAATGGGGATAGTAAGAGTATTCATGTTTGTCTTATTTAAGAGAC
AAACTTTCGATTCTATCAAAAAAGGTGGAAAGAAAAGCCTTTCTAGCGACACGAAAG
Found at i:246577 original size:159 final size:158
Alignment explanation
Indices: 246412--247067 Score: 429
Period size: 159 Copynumber: 4.1 Consensus size: 158
246402 ATCAGTGTCG
* * *
246412 TGTATCCTATTGAAGGGAATGTGTTTTTGGTTCTCAATCTTGAAAAGAATGGAGATTGTTATGAG
1 TGTATCCTAATG-AGGGAATGTGTTTTTGGTGCTCAATCTTGAAAAGAATGGAGATTATTATGAG
* *
246477 AATCGATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAACAAAAGAT
65 AATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
* *
246542 TTTGATACAAAAGAAAATCATCAATATCA
130 TTTCATACAAAACAAAATCATCAATATCA
* * * ** * ** * * *
246571 TTTATCCTAATGAGGAGAATGTGCTTATAATGCTTAATC-ACAAAATGAAAGAAGATCATTACT-
1 TGTATCCTAATGAGG-GAATGTGTTTTTGGTGCTCAATCTTGAAAA-GAATGGAGATTATTA-TG
* * * * * * * * * *
246634 AGAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTGACA--AAACTTGGTGGGAAA-AA
63 AGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA-AGGAAA-ATAG-GGCAAAGAA
* * * * * * * * *
246696 CA-CTTTTCTTGCAAAACCAAACCAACAAAATCG
125 AAGATTTTCATACAAAACAAAATCATCAATATCA
* * * ** * *
246729 TGTATCTTAATGAGAAGACTAAGTTTCTT-GTGC-CTAATCTTGAAAAGAATGGGGATTAGTATG
1 TGTATCCTAATGAG-GGAATGTGTTT-TTGGTGCTC-AATCTTGAAAAGAATGGAGATTATTATG
* * * ** ** ** *
246792 -GCTATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGA-TTCCATCAAAA-ACGGTGGAAAGA
63 AG--AATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATA-GG-GCAAAGA
* * * * * * *
246853 AAAGCTTTTCTTACGACACCAAAGCATCAATGTCA
124 AAAGATTTTCATACAAAACAAAATCATCAATATCA
* * * * *
246888 TGTATCCTATTGAAGAGAATGTGTTTTTGGTACGCAATCTTGAAAAGAATGTAGATTATTATGAG
1 TGTATCCTAATG-AGGGAATGTGTTTTTGGTGCTCAATCTTGAAAAGAATGGAGATTATTATGAG
* * *
246953 AATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAGAGCAAAGAAAAGAT
65 AATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
* *
247018 TTTCATGCAAAAGAAAATCATCAATATCA
130 TTTCATACAAAACAAAATCATCAATATCA
* *
247047 TTTCTCCTAATGA-GGAATGTG
1 TGTATCCTAATGAGGGAATGTG
247068 CTTATAGTAC
Statistics
Matches: 363, Mismatches: 108, Indels: 54
0.69 0.21 0.10
Matches are distributed among these distances:
156 2 0.01
157 17 0.05
158 102 0.28
159 223 0.61
160 18 0.05
161 1 0.00
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (158 bp):
TGTATCCTAATGAGGGAATGTGTTTTTGGTGCTCAATCTTGAAAAGAATGGAGATTATTATGAGA
ATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
TTCATACAAAACAAAATCATCAATATCA
Found at i:247488 original size:19 final size:19
Alignment explanation
Indices: 247458--247494 Score: 58
Period size: 18 Copynumber: 1.9 Consensus size: 19
247448 TGATAATACA
247458 AAAATCAAAAATCAAAAAAT
1 AAAATCAAAAAT-AAAAAAT
247478 AAAAT-AAAAATAAAAAA
1 AAAATCAAAAATAAAAAA
247495 AATCAATGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
19 6 0.35
20 5 0.29
ACGTcount: A:0.81, C:0.05, G:0.00, T:0.14
Consensus pattern (19 bp):
AAAATCAAAAATAAAAAAT
Found at i:247496 original size:28 final size:29
Alignment explanation
Indices: 247464--247546 Score: 89
Period size: 28 Copynumber: 2.9 Consensus size: 29
247454 TACAAAAATC
*
247464 AAAAATCAAAAAATAAAATAAAAAT-AAA
1 AAAAATCAAAAAACAAAATAAAAATCAAA
* *
247492 AAAAATCAATGAAACAAAA-AAAAATCCAA
1 AAAAATCAA-AAAACAAAATAAAAATCAAA
**
247521 AACCATCAAAAAACAAAATTAAAAAT
1 AAAAATCAAAAAACAAAA-TAAAAAT
247547 TCTTCCAAAT
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
28 23 0.51
29 16 0.36
30 6 0.13
ACGTcount: A:0.75, C:0.11, G:0.01, T:0.13
Consensus pattern (29 bp):
AAAAATCAAAAAACAAAATAAAAATCAAA
Found at i:247497 original size:20 final size:20
Alignment explanation
Indices: 247458--247495 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
247448 TGATAATACA
*
247458 AAAATCAAAAATCAAAAAAT
1 AAAATCAAAAATAAAAAAAT
247478 AAAAT-AAAAATAAAAAAA
1 AAAATCAAAAATAAAAAAA
247496 ATCAATGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.82, C:0.05, G:0.00, T:0.13
Consensus pattern (20 bp):
AAAATCAAAAATAAAAAAAT
Found at i:249249 original size:109 final size:108
Alignment explanation
Indices: 249053--249362 Score: 428
Period size: 109 Copynumber: 2.9 Consensus size: 108
249043 TTTAGAATTC
* * ** * *
249053 ATTTTTGCACTAATTATGTAAATTCGAGCACCAAAGGATTGGCCCCAAAATAGGTTATCGTCTAG
1 ATTTTTACATTAATTACATAAATTCGAGCACCAAAAGATTGGCCCCAAAATAGGTAATCGTCTAG
*
249118 AGTCGTAAAGCGGCGTACGAACGCCCTTTACATAGGACAACTT
66 AGTCGTAAAGCGGCGTACGAACGCCCTTTACATAAGACAACTT
* *
249161 ATTTTTTACATTAATTACATAAATTCGGGCACCAAAAGATTGGCCCCAAAATAGGTCATCGTCTA
1 A-TTTTTACATTAATTACATAAATTCGAGCACCAAAAGATTGGCCCCAAAATAGGTAATCGTCTA
* *
249226 GAGTTGTAAAGCGGCGTATGAACGCCCTTTACATAAGACAACTT
65 GAGTCGTAAAGCGGCGTACGAACGCCCTTTACATAAGACAACTT
* * ** * *
249270 ATTTTTGCATTAATTACGTAATATTCGATTACCAAGAGATTGGCCCCGAAATA---AATCGTCTA
1 ATTTTTACATTAATTACATAA-ATTCGAGCACCAAAAGATTGGCCCCAAAATAGGTAATCGTCTA
249332 GAGTCGTAAAGCGGCGTACGAACGCCCTTTA
65 GAGTCGTAAAGCGGCGTACGAACGCCCTTTA
249363 TATATGAAAA
Statistics
Matches: 180, Mismatches: 20, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
106 37 0.21
108 19 0.11
109 124 0.69
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (108 bp):
ATTTTTACATTAATTACATAAATTCGAGCACCAAAAGATTGGCCCCAAAATAGGTAATCGTCTAG
AGTCGTAAAGCGGCGTACGAACGCCCTTTACATAAGACAACTT
Found at i:250432 original size:320 final size:320
Alignment explanation
Indices: 249850--250490 Score: 1246
Period size: 320 Copynumber: 2.0 Consensus size: 320
249840 CTTAATCTAT
249850 TGATGAAAACCAAGGAAGGTCCATTGAAGACAAAGACCTGAAGGCGTTGGAAGGATTTCAAGGAC
1 TGATGAAAACCAAGGAAGGTCCATTGAAGACAAAGACCTGAAGGCGTTGGAAGGATTTCAAGGAC
249915 CAATAACGAGGGCAAAGGCAAAGAGGATAAAGGAAGACCTAGAGAAGATGGTTGCTGGCCTATTT
66 CAATAACGAGGGCAAAGGCAAAGAGGATAAAGGAAGACCTAGAGAAGATGGTTGCTGGCCTATTT
249980 GAAAGTAGACCCAATCTAGAGTTAGAAGAGCCCAAGCTAGTTAATTGCATATATTTGGAAGATAT
131 GAAAGTAGACCCAATCTAGAGTTAGAAGAGCCCAAGCTAGTTAATTGCATATATTTGGAAGATAT
250045 GGGCTCCAACGGATTCAATTAGGACTTGGGTTATTTTGTAATAAAGGGCCTGCTGGTTGTGACTT
196 GGGCTCCAACGGATTCAATTAGGACTTGGGTTATTTTGTAATAAAGGGCCTGCTGGTTGTGACTT
250110 GCTTTGGGCTTTATTTAGCATAAAAACTTGTTATTTGGGTTTAAGTAAGAGTTGGGCTTG
261 GCTTTGGGCTTTATTTAGCATAAAAACTTGTTATTTGGGTTTAAGTAAGAGTTGGGCTTG
250170 TGATGAAAACCAAGGAAGGTCCATTGAAGACAAAGACCTGAAGGCGTTGGAAGGATTTCAAGGAC
1 TGATGAAAACCAAGGAAGGTCCATTGAAGACAAAGACCTGAAGGCGTTGGAAGGATTTCAAGGAC
250235 CAATAACGAGGGCAAAGGCAAAGAGGATAAAGGAAGACCTAGAGAAGATGGTTGCTGGCCTATTT
66 CAATAACGAGGGCAAAGGCAAAGAGGATAAAGGAAGACCTAGAGAAGATGGTTGCTGGCCTATTT
* *
250300 GAAAGTAGACCTAATCTGGAGTTAGAAGAGCCCAAGCTAGTTAATTGCATATATTTGGAAGATAT
131 GAAAGTAGACCCAATCTAGAGTTAGAAGAGCCCAAGCTAGTTAATTGCATATATTTGGAAGATAT
*
250365 GGGCTCCAATGGATTCAATTAGGACTTGGGTTATTTTGTAATAAAGGGCCTGCTGGTTGTGACTT
196 GGGCTCCAACGGATTCAATTAGGACTTGGGTTATTTTGTAATAAAGGGCCTGCTGGTTGTGACTT
*
250430 GCTTTGGGCTTTATTTAGCATAGAAACTTGTTATTTGGGTTTAAGTAAGAGTTGGGCTTG
261 GCTTTGGGCTTTATTTAGCATAAAAACTTGTTATTTGGGTTTAAGTAAGAGTTGGGCTTG
250490 T
1 T
250491 TAGCATAATA
Statistics
Matches: 317, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
320 317 1.00
ACGTcount: A:0.32, C:0.13, G:0.28, T:0.27
Consensus pattern (320 bp):
TGATGAAAACCAAGGAAGGTCCATTGAAGACAAAGACCTGAAGGCGTTGGAAGGATTTCAAGGAC
CAATAACGAGGGCAAAGGCAAAGAGGATAAAGGAAGACCTAGAGAAGATGGTTGCTGGCCTATTT
GAAAGTAGACCCAATCTAGAGTTAGAAGAGCCCAAGCTAGTTAATTGCATATATTTGGAAGATAT
GGGCTCCAACGGATTCAATTAGGACTTGGGTTATTTTGTAATAAAGGGCCTGCTGGTTGTGACTT
GCTTTGGGCTTTATTTAGCATAAAAACTTGTTATTTGGGTTTAAGTAAGAGTTGGGCTTG
Found at i:251814 original size:12 final size:11
Alignment explanation
Indices: 251792--251867 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
251782 AGAGAAAGAA
*
251792 GAGAGAGGAGG
1 GAGATAGGAGG
251803 GATGATAGGAGG
1 GA-GATAGGAGG
*
251815 AGAGACAGGA--
1 -GAGATAGGAGG
*
251825 GAGATAGTA--
1 GAGATAGGAGG
251834 GAGATAGGAGG
1 GAGATAGGAGG
251845 GATGATAGGAGG
1 GA-GATAGGAGG
*
251857 AGAGACAGGAG
1 -GAGATAGGAG
251868 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:251824 original size:24 final size:24
Alignment explanation
Indices: 251791--251876 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
251781 AAGAGAAAGA
*
251791 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
251815 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
251833 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
251857 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
251877 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:251843 original size:42 final size:42
Alignment explanation
Indices: 251782--251900 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
251772 TAGCCCTCAA
* *
251782 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
251824 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* * *
251866 AGAGATAATAGAGAGAGGAGGGATGACAAGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
251901 GAGAGAAGAA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.44, C:0.03, G:0.45, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:251884 original size:18 final size:19
Alignment explanation
Indices: 251857--251906 Score: 52
Period size: 18 Copynumber: 2.7 Consensus size: 19
251847 TGATAGGAGG
*
251857 AGAGACAGGAGAGAT-A-A
1 AGAGAGAGGAGAGATGACA
*
251874 TAGAGAGAGGAGGGATGACA
1 -AGAGAGAGGAGAGATGACA
251894 AGAG-GAGGAGAGA
1 AGAGAGAGGAGAGA
251907 AGAAGATGGA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 21 0.78
19 5 0.19
20 1 0.04
ACGTcount: A:0.46, C:0.04, G:0.44, T:0.06
Consensus pattern (19 bp):
AGAGAGAGGAGAGATGACA
Found at i:257718 original size:12 final size:11
Alignment explanation
Indices: 257696--257771 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
257686 AGAGAAAGAA
*
257696 GAGAGAGGAGG
1 GAGATAGGAGG
257707 GATGATAGGAGG
1 GA-GATAGGAGG
*
257719 AGAGACAGGA--
1 -GAGATAGGAGG
*
257729 GAGATAGTA--
1 GAGATAGGAGG
257738 GAGATAGGAGG
1 GAGATAGGAGG
257749 GATGATAGGAGG
1 GA-GATAGGAGG
*
257761 AGAGACAGGAG
1 -GAGATAGGAG
257772 AGATAACAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:257747 original size:42 final size:42
Alignment explanation
Indices: 257686--257804 Score: 186
Period size: 42 Copynumber: 2.8 Consensus size: 42
257676 TAGCCCTCAA
*
257686 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
257728 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
257770 AGAGATA-ACAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGA-AGAGAGAGGAGGGATGATAGGAGGAG
257805 GAGAGAAGAA
Statistics
Matches: 70, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.43, C:0.03, G:0.46, T:0.08
Consensus pattern (42 bp):
AGAGATAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:257788 original size:18 final size:18
Alignment explanation
Indices: 257761--257810 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
257751 TGATAGGAGG
*
257761 AGAGACAGGAGAGATAAC
1 AGAGAGAGGAGAGATAAC
* *
257779 AGAGAGAGGAGGGATGAC
1 AGAGAGAGGAGAGATAAC
257797 AG-GAGGAGGAGAGA
1 AGAGA-GAGGAGAGA
257811 AGAAGATGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
17 2 0.07
18 25 0.93
ACGTcount: A:0.44, C:0.06, G:0.46, T:0.04
Consensus pattern (18 bp):
AGAGAGAGGAGAGATAAC
Found at i:275688 original size:42 final size:42
Alignment explanation
Indices: 275623--275721 Score: 128
Period size: 42 Copynumber: 2.4 Consensus size: 42
275613 GTAGCCCTCA
* * **
275623 AAGAGAAAGAAGAGATAGGAGGGATGATATG-AGGAGAGATAG
1 AAGAGATAGTAGAGATAAAAGGGATGATA-GAAGGAGAGATAG
*
275665 GAGAGATAGTAGAGATAAAAGGGATGATAGAAGGAGAGATAG
1 AAGAGATAGTAGAGATAAAAGGGATGATAGAAGGAGAGATAG
*
275707 AAGAGATAATAGAGA
1 AAGAGATAGTAGAGA
275722 GAGGAGGGAT
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
41 1 0.02
42 48 0.98
ACGTcount: A:0.49, C:0.00, G:0.37, T:0.13
Consensus pattern (42 bp):
AAGAGATAGTAGAGATAAAAGGGATGATAGAAGGAGAGATAG
Found at i:275730 original size:42 final size:41
Alignment explanation
Indices: 275633--275742 Score: 139
Period size: 42 Copynumber: 2.6 Consensus size: 41
275623 AAGAGAAAGA
* *
275633 AGAGATAGGAGGGATGATATGAGGAGAGATAGGAGAGATAGT
1 AGAGATAGGAGGGATGATA-GAGGAGAGATAGAAGAGATAAT
**
275675 AGAGATAAAAGGGATGATAGAAGGAGAGATAGAAGAGATAAT
1 AGAGATAGGAGGGATGATAG-AGGAGAGATAGAAGAGATAAT
* *
275717 AGAGAGAGGAGGGATAATAGGAGGAG
1 AGAGATAGGAGGGATGATA-GAGGAG
275743 GAGAAAAGAA
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
41 1 0.02
42 56 0.97
43 1 0.02
ACGTcount: A:0.45, C:0.00, G:0.41, T:0.14
Consensus pattern (41 bp):
AGAGATAGGAGGGATGATAGAGGAGAGATAGAAGAGATAAT
Found at i:275732 original size:18 final size:18
Alignment explanation
Indices: 275711--275745 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
275701 AGATAGAAGA
275711 GATAATA-GAGAGAGGAGG
1 GATAATAGGAG-GAGGAGG
275729 GATAATAGGAGGAGGAG
1 GATAATAGGAGGAGGAG
275746 AAAAGAAGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 13 0.81
19 3 0.19
ACGTcount: A:0.43, C:0.00, G:0.46, T:0.11
Consensus pattern (18 bp):
GATAATAGGAGGAGGAGG
Found at i:278229 original size:32 final size:32
Alignment explanation
Indices: 278193--278257 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
278183 GAGGAGCTTC
278193 ATGGGTTAGCAAGCTTTTATAGGTGCTTTGTG
1 ATGGGTTAGCAAGCTTTTATAGGTGCTTTGTG
278225 ATGGGTTAGCAAGCTTTTATAGGTGCTTTGTG
1 ATGGGTTAGCAAGCTTTTATAGGTGCTTTGTG
278257 A
1 A
278258 AAGATTTAGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.20, C:0.09, G:0.31, T:0.40
Consensus pattern (32 bp):
ATGGGTTAGCAAGCTTTTATAGGTGCTTTGTG
Found at i:281868 original size:28 final size:28
Alignment explanation
Indices: 281834--282286 Score: 455
Period size: 28 Copynumber: 16.3 Consensus size: 28
281824 ACAAAAGTTA
* *
281834 AAGCCCACATTCGTTGGCACATGAGTCG
1 AAGCCCACATTCGTTGGCACATAAGTCT
* * *
281862 AAGCCCACATGCATTGGCACACAA-TCT
1 AAGCCCACATTCGTTGGCACATAAGTCT
* * * *
281889 AAGCCCACATTCATTTGCACGTAAGTCA
1 AAGCCCACATTCGTTGGCACATAAGTCT
* * *
281917 AAGCCCACATGCGTTGGCATACAA-TCT
1 AAGCCCACATTCGTTGGCACATAAGTCT
** *
281944 AAGCCCACATTCGTTGGCATGTAAGTCA
1 AAGCCCACATTCGTTGGCACATAAGTCT
* * * *
281972 AAGCCCGCATGCATTGGCACACAA-TCT
1 AAGCCCACATTCGTTGGCACATAAGTCT
* *
281999 AAGCCCATATTCGTTGGCACATAAGTCA
1 AAGCCCACATTCGTTGGCACATAAGTCT
* *
282027 AAGCCCACATGCATTGGCACATAA-TCT
1 AAGCCCACATTCGTTGGCACATAAGTCT
282054 AAGCCCACATTCGTTGGCACATAAGTCT
1 AAGCCCACATTCGTTGGCACATAAGTCT
* * * * *
282082 AAGCCCACATCCATTAGCACGTAAGTTT
1 AAGCCCACATTCGTTGGCACATAAGTCT
*
282110 AAGCCCACATTTGTTGGCACATAAGTCT
1 AAGCCCACATTCGTTGGCACATAAGTCT
* *
282138 AAGCCCACATTCGTCGGCACGTAAGTCT
1 AAGCCCACATTCGTTGGCACATAAGTCT
*
282166 AAGCCCACATTTGTTGGCACATAAGTCT
1 AAGCCCACATTCGTTGGCACATAAGTCT
* * *
282194 AAGCCCACATTCATCGGCACGTAAGTCT
1 AAGCCCACATTCGTTGGCACATAAGTCT
* * * * *
282222 AAGCCCATATTCGCTAGCACATAGGTTT
1 AAGCCCACATTCGTTGGCACATAAGTCT
* * * * * * *
282250 AAGCACACTTTTGCTAGCACGTAAGTCA
1 AAGCCCACATTCGTTGGCACATAAGTCT
282278 AAGCCCACA
1 AAGCCCACA
282287 AGTCAGTGGC
Statistics
Matches: 342, Mismatches: 79, Indels: 8
0.80 0.18 0.02
Matches are distributed among these distances:
27 90 0.26
28 252 0.74
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (28 bp):
AAGCCCACATTCGTTGGCACATAAGTCT
Found at i:281898 original size:55 final size:55
Alignment explanation
Indices: 281834--282244 Score: 498
Period size: 55 Copynumber: 7.4 Consensus size: 55
281824 ACAAAAGTTA
* * *
281834 AAGCCCACATTCGTTGGCACATGAGTCGAAGCCCACATGCATTGGCACACAATCT
1 AAGCCCACATTCGTTGGCACATAAGTCAAAGCCCACATGCATTGGCACATAATCT
* * * * * *
281889 AAGCCCACATTCATTTGCACGTAAGTCAAAGCCCACATGCGTTGGCATACAATCT
1 AAGCCCACATTCGTTGGCACATAAGTCAAAGCCCACATGCATTGGCACATAATCT
** * *
281944 AAGCCCACATTCGTTGGCATGTAAGTCAAAGCCCGCATGCATTGGCACACAATCT
1 AAGCCCACATTCGTTGGCACATAAGTCAAAGCCCACATGCATTGGCACATAATCT
*
281999 AAGCCCATATTCGTTGGCACATAAGTCAAAGCCCACATGCATTGGCACATAATCT
1 AAGCCCACATTCGTTGGCACATAAGTCAAAGCCCACATGCATTGGCACATAATCT
* * * * *
282054 AAGCCCACATTCGTTGGCACATAAGTCTAAGCCCACATCCATTAGCACGTAAGTTT
1 AAGCCCACATTCGTTGGCACATAAGTCAAAGCCCACATGCATTGGCACATAA-TCT
* * * * * *
282110 AAGCCCACATTTGTTGGCACATAAGTCTAAGCCCACATTCGTCGGCACGTAAGTCT
1 AAGCCCACATTCGTTGGCACATAAGTCAAAGCCCACATGCATTGGCACATAA-TCT
* * * * *
282166 AAGCCCACATTTGTTGGCACATAAGTCTAAGCCCACATTCATCGGCACGTAAGTCT
1 AAGCCCACATTCGTTGGCACATAAGTCAAAGCCCACATGCATTGGCACATAA-TCT
* * *
282222 AAGCCCATATTCGCTAGCACATA
1 AAGCCCACATTCGTTGGCACATA
282245 GGTTTAAGCA
Statistics
Matches: 320, Mismatches: 35, Indels: 1
0.90 0.10 0.00
Matches are distributed among these distances:
55 194 0.61
56 126 0.39
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (55 bp):
AAGCCCACATTCGTTGGCACATAAGTCAAAGCCCACATGCATTGGCACATAATCT
Found at i:282308 original size:28 final size:28
Alignment explanation
Indices: 282277--282514 Score: 268
Period size: 28 Copynumber: 8.4 Consensus size: 28
282267 CACGTAAGTC
282277 AAAGCCCACAAGTCAGTGGCATCCTTCA
1 AAAGCCCACAAGTCAGTGGCATCCTTCA
* * *
282305 AAAGCCCACGAGTCA-TCGGTATCCTTATA
1 AAAGCCCACAAGTCAGT-GGCATCCTT-CA
*
282334 AAAGCCCACAAGTTAGTGGCATCCTTTCA
1 AAAGCCCACAAGTCAGTGGCATCC-TTCA
*
282363 AAAGCCCACAAGTCAGTGGCGTCCTTTC-
1 AAAGCCCACAAGTCAGTGGCATCC-TTCA
*
282391 AAAGCCCACAAGTTAGTGGCATCCTTCA
1 AAAGCCCACAAGTCAGTGGCATCCTTCA
*
282419 AAAGCCCACAAGTCAGTGGCATCTTTTC-
1 AAAGCCCACAAGTCAGTGGCATC-CTTCA
* *
282447 AAAGTCCACAAGTCAGTGGCATCTTTTC-
1 AAAGCCCACAAGTCAGTGGCATC-CTTCA
* * *
282475 AAAGTCCACAAGTCAGTGGTATCCTACTCT
1 AAAGCCCACAAGTCAGTGGCATCCT--TCA
282505 AAAGCCCACA
1 AAAGCCCACA
282515 CAAGTCGGTG
Statistics
Matches: 184, Mismatches: 17, Indels: 16
0.85 0.08 0.07
Matches are distributed among these distances:
27 5 0.03
28 115 0.62
29 52 0.28
30 12 0.07
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.23
Consensus pattern (28 bp):
AAAGCCCACAAGTCAGTGGCATCCTTCA
Found at i:282395 original size:57 final size:56
Alignment explanation
Indices: 282275--282514 Score: 304
Period size: 56 Copynumber: 4.2 Consensus size: 56
282265 AGCACGTAAG
* *
282275 TCAAAGCCCACAAGTCAGTGGCATCCTTCAAAAGCCCACGAGTCA-TCGGTATCCTT
1 TCAAAGCCCACAAGTCAGTGGCATCCTTCAAAAGCCCACAAGTCAGT-GGCATCCTT
* * *
282331 ATAAAAGCCCACAAGTTAGTGGCATCCTTTCAAAAGCCCACAAGTCAGTGGCGTCCTT
1 -TCAAAGCCCACAAGTCAGTGGCATCC-TTCAAAAGCCCACAAGTCAGTGGCATCCTT
* *
282389 TCAAAGCCCACAAGTTAGTGGCATCCTTCAAAAGCCCACAAGTCAGTGGCATCTTT
1 TCAAAGCCCACAAGTCAGTGGCATCCTTCAAAAGCCCACAAGTCAGTGGCATCCTT
* * * * *
282445 TCAAAGTCCACAAGTCAGTGGCATCTTTTC-AAAGTCCACAAGTCAGTGGTATCCTAC
1 TCAAAGCCCACAAGTCAGTGGCATC-CTTCAAAAGCCCACAAGTCAGTGGCATCCT-T
282502 TCTAAAGCCCACA
1 TC-AAAGCCCACA
282515 CAAGTCGGTG
Statistics
Matches: 162, Mismatches: 16, Indels: 9
0.87 0.09 0.05
Matches are distributed among these distances:
56 73 0.45
57 54 0.33
58 34 0.21
59 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.23
Consensus pattern (56 bp):
TCAAAGCCCACAAGTCAGTGGCATCCTTCAAAAGCCCACAAGTCAGTGGCATCCTT
Found at i:283264 original size:8 final size:7
Alignment explanation
Indices: 283246--283344 Score: 62
Period size: 7 Copynumber: 13.6 Consensus size: 7
283236 TTGATAATAA
283246 AAAAATC
1 AAAAATC
283253 AAAAATC
1 AAAAATC
283260 AAAAATC
1 AAAAATC
283267 AAAAAT-
1 AAAAATC
*
283273 AAAAA-A
1 AAAAATC
283279 ATAAAAT-
1 A-AAAATC
*
283286 AAAAATAAA
1 AAAAAT--C
283295 AAAAATC
1 AAAAATC
*
283302 AATGAAACC
1 AA--AAATC
*
283311 AAAAA-A
1 AAAAATC
283317 AAAAATCC
1 AAAAAT-C
283325 AAAACCATC
1 AAAA--ATC
283334 AAAAATC
1 AAAAATC
283341 AAAA
1 AAAA
283345 TTAAAAATTC
Statistics
Matches: 76, Mismatches: 4, Indels: 24
0.73 0.04 0.23
Matches are distributed among these distances:
6 16 0.21
7 37 0.49
8 4 0.05
9 17 0.22
10 2 0.03
ACGTcount: A:0.75, C:0.12, G:0.01, T:0.12
Consensus pattern (7 bp):
AAAAATC
Found at i:283265 original size:14 final size:14
Alignment explanation
Indices: 283246--283344 Score: 62
Period size: 13 Copynumber: 6.8 Consensus size: 14
283236 TTGATAATAA
283246 AAAAATCAAAAATC
1 AAAAATCAAAAATC
283260 AAAAATCAAAAAT-
1 AAAAATCAAAAATC
*
283273 AAAAA-AATAAAAT-
1 AAAAATCA-AAAATC
*
283286 AAAAATAAAAAAAATC
1 AAAAAT--CAAAAATC
* *
283302 AATGAAACCAAAAA-A
1 AA--AAATCAAAAATC
283317 AAAAATCCAAAACCATC
1 AAAAAT-CAAAA--ATC
283334 AAAAATCAAAA
1 AAAAATCAAAA
283345 TTAAAAATTC
Statistics
Matches: 68, Mismatches: 6, Indels: 20
0.72 0.06 0.21
Matches are distributed among these distances:
12 1 0.01
13 18 0.26
14 18 0.26
15 7 0.10
16 15 0.22
17 6 0.09
18 3 0.04
ACGTcount: A:0.75, C:0.12, G:0.01, T:0.12
Consensus pattern (14 bp):
AAAAATCAAAAATC
Found at i:283276 original size:20 final size:20
Alignment explanation
Indices: 283246--283352 Score: 65
Period size: 22 Copynumber: 5.0 Consensus size: 20
283236 TTGATAATAA
283246 AAAAATCAAAAATCAAAAATC
1 AAAAAT-AAAAATCAAAAATC
*
283267 AAAAATAAAAA-AATAAAAT-
1 AAAAATAAAAATCA-AAAATC
*
283286 AAAAATAAAAAAAATCAATGAAACC
1 AAAAAT---AAAAATCAA--AAATC
*
283311 AAAAAAAAAAATCCAAAACCATC
1 AAAAATAAAAAT-CAAAA--ATC
* *
283334 AAAAATCAAAATTAAAAAT
1 AAAAATAAAAATCAAAAAT
283353 TCTTCCAAAT
Statistics
Matches: 67, Mismatches: 8, Indels: 23
0.68 0.08 0.23
Matches are distributed among these distances:
19 7 0.10
20 12 0.18
21 8 0.12
22 16 0.24
23 16 0.24
24 3 0.04
25 5 0.07
ACGTcount: A:0.74, C:0.11, G:0.01, T:0.14
Consensus pattern (20 bp):
AAAAATAAAAATCAAAAATC
Found at i:283289 original size:19 final size:20
Alignment explanation
Indices: 283261--283298 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
283251 TCAAAAATCA
283261 AAAATCAAAAATAAAAAAAT
1 AAAATCAAAAATAAAAAAAT
283281 AAAAT-AAAAATAAAAAAA
1 AAAATCAAAAATAAAAAAA
283299 ATCAATGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.84, C:0.03, G:0.00, T:0.13
Consensus pattern (20 bp):
AAAATCAAAAATAAAAAAAT
Found at i:283919 original size:12 final size:12
Alignment explanation
Indices: 283902--283926 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
283892 AAGGAGACGA
283902 TAAAAAAAAGAG
1 TAAAAAAAAGAG
283914 TAAAAAAAAGAG
1 TAAAAAAAAGAG
283926 T
1 T
283927 CAACACGAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.16, T:0.12
Consensus pattern (12 bp):
TAAAAAAAAGAG
Found at i:285066 original size:109 final size:108
Alignment explanation
Indices: 284873--285179 Score: 416
Period size: 109 Copynumber: 2.8 Consensus size: 108
284863 TTTAGAATTC
* * * * ** **
284873 ATTTTTGCACTAATTACGTAAATTCAGGCACTAAAGGATTGGCCATGAAATAGGTCATTGTCTAG
1 ATTTTTGCATTAATTACGTAAATTCGGGCACCAAAAGATTGGCCCCGAAATAGGTCATCATCTAG
* *
284938 AGTCGTAAAGCGGCATACGAACGCCCTTTACATAGGACAACTT
66 AGTCGTAAAGCGGCGTACGAACGCCCTTTACATAAGACAACTT
*
284981 ATTTTTTGCATTAATTATGTAAATTCGGGCACCAAAAGATTGGCCCCGAAATAGGTCATCATCTA
1 A-TTTTTGCATTAATTACGTAAATTCGGGCACCAAAAGATTGGCCCCGAAATAGGTCATCATCTA
* *
285046 GAGTCGTAAAGCGGCGTACGAATGCCCTTTATATAAGACAACTT
65 GAGTCGTAAAGCGGCGTACGAACGCCCTTTACATAAGACAACTT
*** * **
285090 ATTTTTGCATTAATTACGTAATATTCGATTACCAAGAGATTGGCCCCGAAATAAATCATCATCTA
1 ATTTTTGCATTAATTACGTAA-ATTCGGGCACCAAAAGATTGGCCCCGAAATAGGTCATCATCTA
*
285155 GAGTCGTAAAGCAGCGTACGAACGC
65 GAGTCGTAAAGCGGCGTACGAACGC
285180 ATTTTATATA
Statistics
Matches: 175, Mismatches: 22, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
108 20 0.11
109 155 0.89
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (108 bp):
ATTTTTGCATTAATTACGTAAATTCGGGCACCAAAAGATTGGCCCCGAAATAGGTCATCATCTAG
AGTCGTAAAGCGGCGTACGAACGCCCTTTACATAAGACAACTT
Found at i:285439 original size:10 final size:10
Alignment explanation
Indices: 285426--285455 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
285416 ATCCACCTTT
285426 ATAAAAAATA
1 ATAAAAAATA
285436 AT-AAAAATA
1 ATAAAAAATA
285445 ATAAAAAATA
1 ATAAAAAATA
285455 A
1 A
285456 AATTTTTCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.47
10 10 0.53
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (10 bp):
ATAAAAAATA
Found at i:287179 original size:475 final size:474
Alignment explanation
Indices: 286272--288001 Score: 2093
Period size: 475 Copynumber: 3.6 Consensus size: 474
286262 CGTTATGACA
* * *
286272 CAAAGCATCAATATCGTGTATCCTAATGAGAAGATTATGTTTATGGTGCCTAATCCAGAAAAGAA
1 CAAAACATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAA
* * * * *
286337 TGGGGATTAGCATGAGTATTCATGTTTATCTTATTTAAGTGACAAACTTTGATTCTATCAAAAAC
66 AGGGGATTAGTATGACTATTCATGTTTATCTTATTTAAGAGACAAACTTTGATTCTATAAAAAAC
* * **
286402 GGTGGAAAGAAAAGCTTTTCATGCGACACCAAAGTGTCAATGTCATGTATCCTAATGAAGGAAAT
131 GGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGAAAT
* ** * * * * * *
286467 GTGTTTTGGGTTCCCAATCCTGAAAATGATGGTGACTGCTATGAGAATAGATGCTCGCCTTATTT
196 GTGTTTTTGGTTCCCAATCCTGAAAACAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTT
** * *
286532 AAGGGATGAACTTTGATAATAAAGAAAATATGGCAAATAAAAGATTTCCAAGCAAAAGAAAATCA
261 AAGGGATGAACTTTGATTTTAAAGAAAATAAGGCAAAGAAAAGATTTCCAAGCAAAAGAAAATCA
* *
286597 TCAATATCATTTATCGTAATGAGGAGAATGTGCTTATAGCGCCCAATCACAAAATGAATGATGAT
326 TCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGCGCCTAATCACAAAATGAATGATGAT
** * * *
286662 CATTAAAAGAATCAATGTTTGTCTCATTTA-AGGCACGAACTTAGAATTAACAAAAATTATGGGA
391 CATTACTAGAATCCATGTTTGTCTCA-TTAGAGGCATGAACTTAGAATTTACAAAAATTATGGGA
* *
286726 AAATTACCTTTCATGCGAAAC
455 AAA-TACCTTTCTTGCAAAAC
* * * *
286747 CAAAACATTAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCATAATCTTGAAAAGAA
1 CAAAACATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAA
* * * *
286812 AGGTGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATAAAAAAT
66 AGGGGATTAGTATGACTATTCATGTTTATCTTATTTAAGAGACAAACTTTGATTCTATAAAAAAC
* * * * *
286877 GGTGGAAAGAAAAGCTTTTCTTATTACACCAAAGCATCAATGTCGTGTATCCTATTGAAGGGAAT
131 GGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGAAAT
* * * * *
286942 GTGTTTTTGGTACCCAAT-CTGGGAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATT
196 GTGTTTTTGGTTCCCAATCCT-GAAAACAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATT
* **
287006 TAAAGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCCAAGCAAAAGAAAATC
260 TAAGGGATGAACTTTGATTTTAAAGAAAATAAGGCAAAGAAAAGATTTCCAAGCAAAAGAAAATC
*
287071 ATCAATATCATTTATCCTAGTGAGGAGAATGTGCTTATAGCGCCTAATCACAAAATGAATGATGA
325 ATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGCGCCTAATCACAAAATGAATGATGA
* * *
287136 TCATTACTAGAATCCACGTTTGTCTTATTAGAGGCATGAACTTAGACTTTACAAAAATTAGTGGG
390 TCATTACTAGAATCCATGTTTGTCTCATTAGAGGCATGAACTTAGAATTTACAAAAATTA-TGGG
* *
287201 AAAAAAGGCCATTCTTGCAAAAC
454 AAAATA--CCTTTCTTGCAAAAC
* *
287224 CAAAACATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGGAAAGAA
1 CAAAACATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAA
* * *
287289 TGGGGATTAGTA-CAGCTATTCATGTTTATCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA
66 AGGGGATTAGTATGA-CTATTCATGTTTATCTTATTTAAGAGACAAACTTTGATTCTATAAAAAA
* * * * * * * *
287353 TGGTGGAAAGAAAAACTTTCCTTGTGACACCAAAGCATTAATGTCATGTATCCTATTAAAGGGAC
130 CGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGAAA
* * * * * * *
287418 TGTGTTTTTGGCTCCCAATCTTGAAAACAAGGGAGATTGTTACGAGAACCGATGGTTGTCTTATA
195 TGTGTTTTTGGTTCCCAATCCTGAAAACAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATT
* ** * * *
287483 TAGGGGATGAACTTCAATTTTAAGGAAAAT-AGGACAAAAAAAAGA-TTCCATGCAAAAGAAAAT
260 TAAGGGATGAACTTTGATTTTAAAGAAAATAAGG-CAAAGAAAAGATTTCCAAGCAAAAGAAAAT
* * * * * *
287546 CAACAATATCATTTCTCCTAATGA-G-GAATGCGCTTATAGTGCCTACTCACAAAATGAATGAAG
324 CATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGCGCCTAATCACAAAATGAATGATG
* * * * * * * *
287609 ATCATTACTAGAATCCATGTTTGTCCCATTTGGGGCATGAACTTAAAACTTTGCGATAATTGGTG
389 ATCATTACTAGAATCCATGTTTGTCTCATTAGAGGCATGAACTTAGAA-TTTACAAAAATT-ATG
*
287674 GGAAAAATGCCTTTCTTGCAAAAC
452 GG-AAAATACCTTTCTTGCAAAAC
* * * * *
287698 CAAAGCATCAATATTGTGTATCCTAAAT-AGAAGAAC-ATGTTTCTAGTGCCTAATCTTGAAAA-
1 CAAAACATCAATATCGTGTATCCT-AATGAGAAG-ACTATGTTTATGGTGCCTAATCCTGAAAAG
* * * * * **
287760 AAATGAGGATTAGTATGAGTATT-AAGTTTTTCTAATTTAAGAGACAAACTTTGATTCTGGAAAA
64 AAA-GGGGATTAGTATGACTATTCATGTTTATCTTATTTAAGAGACAAACTTTGATTCTATAAAA
* * *
287824 AACGGTGGAAAGAAAAGCCTTTCTTGTGACACCAAAGCTTAAATGTCATGTATCCTAATGAAGGA
128 AACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGA
* * * * * *
287889 AATTTGTTTTAGGTTCCCAATCCTAAAAACAATAGAGACTATTACGAGAATCAATGCTTGT-TTA
193 AATGTGTTTTTGGTTCCCAATCCTGAAAACAATGGAGACTGTTACGAGAATCGATGCTTGTCTTA
* * *
287953 -TTAAGGGA-GAAACTTTGATTTTATAGAAAATAGGGCAAAGAATAGATTT
258 TTTAAGGGATG-AACTTTGATTTTAAAGAAAATAAGGCAAAGAAAAGATTT
288002 ATGTTTGCCT
Statistics
Matches: 1073, Mismatches: 164, Indels: 39
0.84 0.13 0.03
Matches are distributed among these distances:
470 1 0.00
471 32 0.03
472 7 0.01
473 141 0.13
474 156 0.15
475 409 0.38
476 54 0.05
477 272 0.25
478 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (474 bp):
CAAAACATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAA
AGGGGATTAGTATGACTATTCATGTTTATCTTATTTAAGAGACAAACTTTGATTCTATAAAAAAC
GGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGAAAT
GTGTTTTTGGTTCCCAATCCTGAAAACAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTT
AAGGGATGAACTTTGATTTTAAAGAAAATAAGGCAAAGAAAAGATTTCCAAGCAAAAGAAAATCA
TCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGCGCCTAATCACAAAATGAATGATGAT
CATTACTAGAATCCATGTTTGTCTCATTAGAGGCATGAACTTAGAATTTACAAAAATTATGGGAA
AATACCTTTCTTGCAAAAC
Found at i:287385 original size:159 final size:158
Alignment explanation
Indices: 286272--287407 Score: 473
Period size: 159 Copynumber: 7.2 Consensus size: 158
286262 CGTTATGACA
* * * *
286272 CAAAGCATCAATATCGTGTATCCTAATGAGAAGATTATGTTTATGGTGCCTAATCCAGAAAAGAA
1 CAAAACATCAATATCATGTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATCCTGAAAAGAA
* * * * * *
286337 TGGGGATTAGCATGAGTATTCATGTTTATCTTATTTAAGTGACAAACTTTGATTCTATCAAAAAC
66 TGGTGATTAGTA-CAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAT
* * * * ** *
286402 GGTGGAAAGAAAAGCTTTTCATGCGACAC
130 AGTGGAAAGAAAAACTTTCCTTGTAAAAC
*** * * * * *
286431 CAAAGTGTCAATGTCATGTATCCTAATGA-AGGAA-ATGTGTTTTGGGTTCCCAATCCTGAAAAT
1 CAAAACATCAATATCATGTATCCTAATGAGAAGAATATGT-TTAT-GGTGCCTAATCCTGAAAA-
* * * ** * * * * ** ** *
286494 G-ATGGTGACT-GCTATGAGAATAGATGCTCGCCTTATTTAAGGGATGAACTTTGATAATA-AAG
63 GAATGGTGATTAG-TA-CAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA-
* ** *
286556 AAAATA-TGGCAAATAAAAGA-TTTCCAAGCAAAA-
125 AAAATAGTGG-AAAGAAAA-ACTTTCCTTGTAAAAC
* * * * * * * * *
286589 GAAAATCATCAATATCATTTATCGTAATGAGGAGAATGTGCTTATAGCGCCCAATCAC--AAAAT
1 CAAAA-CATCAATATCATGTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATC-CTGAAAA-
* * * * * * * * * *
286652 GAATGATGATCATTAAAAG-AATCAATGTTTGTCTCATTTAAG-GCACGAACTTAGAAT-TAACA
63 GAATGGTGATTAGT-ACAGTATTC-ATGTTTGTCTTATTTAAGAG-ACAAACTTTGATTCTATCA
** * * **
286714 AAAATTA-TGGGAAA-ATTACCTTT-CATGCGAAAC
125 AAAA-TAGT-GGAAAGAAAAACTTTCCTTGTAAAAC
* ** * * *
286747 CAAAACATTAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCATAATCTTGAAAAGAA
1 CAAAACATCAATATCATGTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATCCTGAAAAGAA
* * * * *
286812 AGGTGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATAAAAAAT
66 TGGTGATTAGTA-CAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAT
* * * * * *
286877 GGTGGAAAGAAAAGCTTTTCTTATTACAC
130 AGTGGAAAGAAAAACTTTCCTTGTAAAAC
* * * * * * * * * *
286906 CAAAGCATCAATGTCGTGTATCCTATTGA-AGGGAATGTGTTTTTGGTACCCAAT-CTGGGAAAG
1 CAAAACATCAATATCATGTATCCTAATGAGA-AGAATATGTTTATGGTGCCTAATCCT-GAAAAG
* * * * ** * **
286969 AATGGAGATT-GTTATGAG-AATCGATGCTTGTCTTATTTAA-AGGATGAACTTTGATTTTATGG
64 AATGGTGATTAG-TA-CAGTATTC-ATGTTTGTCTTATTTAAGA-GACAAACTTTGATTCTATCA
* ** *
287031 AAAATAAG-GCAAAGAAAAGA-TTTCCAAGCAAAA-
125 AAAAT-AGTGGAAAGAAAA-ACTTTCCTTGTAAAAC
* * * * * * * *
287064 GAAAATCATCAATATCATTTATCCTAGTGAGGAGAATGTGCTTATAGCGCCTAATCAC--AAAAT
1 CAAAA-CATCAATATCATGTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATC-CTGAAAA-
* * * * * * * *
287127 GAATGATGATCATTACTAGAATCCACGTTTGTCTTA-TT-AGAGGCATGAACTTAGACTT-TA-C
63 GAATGGTGATTAGTAC-AGTATTCATGTTTGTCTTATTTAAGAGACA--AACTTTGA-TTCTATC
** * *
287188 AAAAATTAGTGGGAAA-AAAGGCCATT-CTTGCAAAAC
124 AAAAA-TAGT-GGAAAGAAA-AACTTTCCTTGTAAAAC
* *
287224 CAAAACATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGGAAAGAA
1 CAAAACATCAATATCATGTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATCCTGAAAAGAA
* *
287289 TGGGGATTAGTACAGCTATTCATGTTTATCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAT
66 TGGTGATTAGTACAG-TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAT
* * *
287354 GGTGGAAAGAAAAACTTTCCTTGTGACAC
130 AGTGGAAAGAAAAACTTTCCTTGTAAAAC
* * *
287383 CAAAGCATTAATGTCATGTATCCTA
1 CAAAACATCAATATCATGTATCCTA
287408 TTAAAGGGAC
Statistics
Matches: 703, Mismatches: 210, Indels: 128
0.68 0.20 0.12
Matches are distributed among these distances:
156 1 0.00
157 94 0.13
158 93 0.13
159 469 0.67
160 37 0.05
161 9 0.01
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (158 bp):
CAAAACATCAATATCATGTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATCCTGAAAAGAA
TGGTGATTAGTACAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATA
GTGGAAAGAAAAACTTTCCTTGTAAAAC
Found at i:288933 original size:476 final size:475
Alignment explanation
Indices: 288002--294321 Score: 8351
Period size: 475 Copynumber: 13.3 Consensus size: 475
287992 GAATAGATTT
* * *
288002 ATGTTTGCCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGAGGAAAGAAAAGCTTTTCT
1 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* * * * * *
288067 TGCGACACCAAAGCGTCAAGGTCATGTATCCTACTAAAGGGAATGTGTTTTAGGTTCCCAATCCT
66 TGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTT-GGTACCCAATCTT
* * * * * * * *
288132 GAAAATAATGGAGACTGCTATGAGATTCGATGCTTGTCTTATTTAAGGGTTGAATTTTGATTATA
130 GAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA
* * * * * *
288197 AGGAAAATAGCGCAAATAAAAGA-TTTCTAAGCAAAATAAAATCATCAATATCATTTATCGTAAT
195 TGGAAAATAGGGCAAAGAAAAGATTTTC-ATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
* *
288261 GTGGAGAATGTGCTTATAGTGCCTAATCACAAAAT-AATTGAAGATCATTACTAGAATCCTTGTT
259 GAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAA-TGAAGATCATTACTAGAATCCATGTT
* * *
288325 TGTCT-ATTTGAGGCAAGAACTTAGACTTAACAAAAATTGGTGGGAAAAATGCCTTTCTTGCAAA
323 TGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAA
* * * *
288389 ACCAAAACATCAATATTGCATATCCTAATGAGAAGACTATATTTATGGTGCCTAACCCTGAAAAG
388 ACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAG
*
288454 AATGGGGTTTAGTTTGACTATTC
453 AATGGGGATTAGTTTGACTATTC
* *
288477 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATGAAAAACGGTGGAAACAAAAGCTTTTCT
1 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* * * *
288542 TGCGACATCAAAGCATCAATGTCCTATATCCTATTGAAGGGAATGTGCTTTTAGTACCCAATCTT
66 TGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTG-TTTTGGTACCCAATCTT
* * * *
288607 GAAAAGAATGGAGATTCTTACAAGAATTGATGCTTGTCTTATTTAGGGGATGAACTTTGATTTTA
130 GAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA
* *
288672 TGGCAAATAAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
195 TGGAAAAT-AGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
* * *
288737 GAGGAGAATGTGCTTATAGTGCCTAATCGCAAAATGACTAAAGATCATTACTAGAATCCATGTTT
259 GAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
* * * * *
288802 GTCTCATTCGGGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAAAATACGTTTCTTGCGAAA
324 GTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAA
* * * *
288867 CCAAAATATCAATATCGCGTATCGTAATGAGAAG-CTATATTTATGGTGCCTACTCCTGAAAAGA
389 CCAAAACATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGA
*
288931 ATGGGAATTAGTTTGACTATTC
454 ATGGGGATTAGTTTGACTATTC
* * *
288953 GTGTTTGTCTTATTTAAGAGACAAACTTTGGTTCCATCAAAAACGATGGAAAGAAAAGCTTTTCT
1 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* *
289018 TGCGACACCAAAGCATCAATGTCATGTATCCAACTGAAGGGAATGTGTTTTTGGTACCCAATCTT
66 TGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTG-TTTTGGTACCCAATCTT
*
289083 GAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA
130 GAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA
* * * *
289148 AGGAAAATAGGGC-ATGCAAAAG-TTTTGATACAAAAGAAAATCATCAATATCATTTATCCTAAT
195 TGGAAAATAGGGCAAAG-AAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
*
289211 GAGGAGAATGTGCTTATAGTGCCTAATAACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
259 GAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
* *
289276 GTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCAAAA
324 GTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAA
* * * * * *
289341 CCAAAACATCAATATCGTGTCTCCTAATGAGAAGACAATGTGTATGGCGCCTAATCCAGAAAAGA
389 CCAAAACATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGA
** *
289406 ATGGGGATTAGTAGGAGTATTC
454 ATGGGGATTAGTTTGACTATTC
* * * * *
289428 ATGTTCGCCTTATTCAAGAGACAAACTTTGATTCTATCAAAAACGGAGGAAAGAAAAGCTTTTCT
1 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* * * * * * *
289493 TGCTAAACCAAAGCATCAAGGTCATGTATCCTACTGAAGGGAATGTGTTTTAGGTTCCCATTCCT
66 TGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTT-GGTACCCAATCTT
* * * * ** * * *
289558 GGAAATAATGGAGACTGCTACGAGAATCGATGCTCATCTTATTTAAGGGTTGAATTTTGATTATA
130 GAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA
* * * * * * * *
289623 AGGAAAATAGCGCAAATAAAAGATTTTTAAGCAAAATAAAATCATCAATATCATTTATCGTATTG
195 TGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATG
* * *
289688 TGGAGAATGTGCTTATAGTGCCTAATCACAAAAT-AACTGAAGATCATTTCTAGAATCCTTGTTT
260 AGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAA-TGAAGATCATTACTAGAATCCATGTTT
* *
289752 GTCT-ATTTGAGGCAAGAACTTAGACTTAACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAA
324 GTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAA
* * * * *
289816 CCAAAACATCAATATTGCATATCCAAATGAGAAGACTATATTTATGGTGCCTAACCCTGAAAAGA
389 CCAAAACATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGA
289881 ATGGGGATTAGTTTGACTATTC
454 ATGGGGATTAGTTTGACTATTC
** *
289903 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATGGAAAACGGTGGAAACAAAAGCTTTTCT
1 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* * *
289968 TGCGACATCAAAGCATCAATGTCATGTATCCTATTAAAGGGAATGTGTTTTTGTACCCAATCTTG
66 TGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTGGTACCCAATCTTG
* * *
290033 AAAATAATGGAGATTGTTACGATAATCGATGCTTGTCTTATTTAAGGGATGAACTTTAATTTTAT
131 AAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAT
* *
290098 GAAAAATAAGGGCAAAGAAAAAATTTTCATTG-AAAAGAAAATCATCAATATCATTTATCCTAAT
196 GGAAAAT-AGGGCAAAGAAAAGATTTTCA-TGCAAAAGAAAATCATCAATATCATTTATCCTAAT
*
290162 GAGGAGAATATGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
259 GAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
* * **
290227 GTCTCACTTGAGGCACGAACTTAGACTTTGCAAAAATTGGTGGG-AAAATGCCTTTCTTTTGAAA
324 GTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAA
* * * *
290291 CCAAAATATCAATATCGCGTATCCTAATGAGAAGATTGTGCTTATGGTGCCTAATCCTGAAAAGA
389 CCAAAACATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGA
*
290356 ATAGGGATTAGTTTGACTATTC
454 ATGGGGATTAGTTTGACTATTC
* * ** *
290378 ATGTTAGTATTATTTAAGAGACAAACTTTGATTCCATCAAAAATAGTGGAAGGAAAAGCTTTTCT
1 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCT
*
290443 TGCGACACCAGAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTACCCAATCTT
66 TGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTG-TTTTGGTACCCAATCTT
* *
290508 GAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGAGATGAACTTTGATTTTA
130 GAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA
* * * * * * *
290573 AGGAAAATAGGCCAAACAAAAGATTTTGATACAAAAGAAAATCATCAATATAATTTATCCTAAAG
195 TGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATG
* *
290638 AGGATAATGTGCTTATAGTGCCTAATCATAAAACT-AATGAAGATCATTACTAGAATCCATGTTT
260 AGGAGAATGTGCTTATAGTGCCTAATCACAAAA-TGAATGAAGATCATTACTAGAATCCATGTTT
* * * * * *
290702 GTCTCAATTGAGGCACGAACTTAGACTCTACAAAAATTGGTCGAAAAAAAGCCTTTCTTACGAAA
324 GTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAA
* * * *
290767 CCAAAACATCAATATCGCGTATCCTAATGAAAAGAC-AGTTTTTTTGGTGCCTAATCCTAAAAAG
389 CCAAAACATCAATATCGCGTATCCTAATGAGAAGACTA-TGTTTATGGTGCCTAATCCTGAAAAG
*
290831 AATGGGGATTAGTATGACTATTC
453 AATGGGGATTAGTTTGACTATTC
* * *
290854 ATATTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCT
1 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCT
*
290919 TGCGACACCAAAGCATCAATATCATGTATCCTATTGAAGGGAATGTGTTTTTGGTACCCAATCTT
66 TGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTG-TTTTGGTACCCAATCTT
290984 GAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA
130 GAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA
* * * ** *
291049 TGGAAAATAAGGGCAAAGAAAAGATTTTGATACAAAAGAAAACCATCAATATCATTGGTCCTAAA
195 TGGAAAAT-AGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
* * * *
291114 GAGGAGAATGTGGTTATAGTGCCTAATAACAAAATGAATGAGGATCATTACTAGAATCTATGTTT
259 GAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
* *
291179 GTCTCGA-TTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCAAA
324 GTCTC-ATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAA
*** * *
291243 ACCAAAACATCAATATCATTTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAA
388 ACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAG
* * *** *
291308 AATGGGCAATACAATGAGTATTC
453 AATGGGGATTAGTTTGACTATTC
* * * * * * *
291331 AAGTTTGTCTTATTTGAGGGATAAACTTTGATTCTATCAAAAATGGTTGAAAGAAAAGCTTTTCT
1 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* ** *
291396 TGCAACACCAAAGCATCAATGTCATTGTATCCTATTGTTGGGAATGTGTTTTTGGTTCCCAATCT
66 TGCGACACCAAAGCATCAATGTCA-TGTATCCTATTGAAGGGAATGTG-TTTTGGTACCCAATCT
* * * *
291461 TGAAAAGAATGG-GGTCTATTACGAGAATCGATGCTTATCTTATTTAAGGGAAGAACTTTGATTT
129 TGAAAAGAATGGAGAT-TGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTT
* * * *
291525 TATGGAAAAAAAAAAGGGCAAAAAAAAGATTTTCATTCAAAAGAAAATCACCAATATCATTTATC
193 TATGG----AAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATC
* * *
291590 CTAATGAGGAGAATATGCTGATAGTGCCTAATAACAAAATGAAT-AAGGATCATTACTAGAATCC
254 CTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAA-GATCATTACTAGAATCC
* * * *
291654 ATGTTTGTCCCGTTTGAGGCATGAACTTAGACTTTACGAAAATTGGTGGGAAAAATGCCTTTCTT
318 ATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTT
* * * * **
291719 GCAAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACAATGTTTATGGCGCCTAATCCAA
383 GCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTG
*
291784 AAAAGAATGGGGATTAGTTTGAGTATTC
448 AAAAGAATGGGGATTAGTTTGACTATTC
* * * * * *
291812 ATGTCTGCCTTATTCAAGAGACAAACATTGATTCTATCAAAAACGGAGGAAAGAAAAGCTTTTCT
1 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* * * * * *
291877 TACGACACCAAAGCGTCAAGGTCATGTATCCTACTGAAGGGAATGTGTTTTAGGTTCCCAATCCT
66 TGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTT-GGTACCCAATCTT
* * * * * * *
291942 GAAAATAATGGAGACTGCTACGAGAATTGATGCTCGTCTTATTTAAGGGTTGAACTTTGATTATA
130 GAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA
* * * * * * * *
292007 AGGAAAATAGCGCAAATAAAAGATTTTTAAGCAAAATAAAATCATCAATATCATTTATCGTATTG
195 TGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATG
* *
292072 TGGAGAATGTGCTTATAGTGCCTAATCACAAAAT-AATTGAAGATCATTACTAGAATCCTTGTTT
260 AGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAA-TGAAGATCATTACTAGAATCCATGTTT
* * * *
292136 GT-TTATTTGAGGCAAGAACTTAGACTTTAACAAAAATTGGTGGGACAAATCCCTTTCTT-CTGA
324 GTCTCATTTGAGGCACGAACTTAGACTTT-ACAAAAATTGGTGGGAAAAATGCCTTTCTTGC-GA
* *
292199 AACCAAAACATCAATATTC-CGTATCCTAATGAGAAGACTATATTTATGGTGCCTAACCCTGAAA
387 AACCAAAACATCAATA-TCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAA
292263 AGAATGGGGATTAGTTTGACTATTC
451 AGAATGGGGATTAGTTTGACTATTC
* *
292288 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATGAAAAACGGTGGAAACAAAAGCTTTTCT
1 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* * *
292353 TGTGACATCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGCACCCAATCTT
66 TGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTG-TTTTGGTACCCAATCTT
*
292418 GAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTA
130 GAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA
* * *
292483 TGGAAAATAAGGGCCAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAC
195 TGGAAAAT-AGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
* * * * *
292548 AAGGAGAATGTGCTTATAGTGCCTGATCACAAAATGACTGAAGATCATT--T---ATCCTTTTTT
259 GAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
* * *
292608 GTCT-ATTTGAGGCAAGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCTTTTCTTACGAAA
324 GTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAA
* * * *
292672 CCAAAACATCAATATCACGTATCCTAATGAGAAGACTATATTTATGGTGCCCAATCTTGAAAAGA
389 CCAAAACATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGA
*
292737 ATAGGGATTAGTTTGACTATTC
454 ATGGGGATTAGTTTGACTATTC
* * *
292759 TTGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATAAAAAACGGCGGAAAGAAAAGCTTTTCT
1 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* * *
292824 TGTGACACCAAAGCATCAATGTCATGTATCCTATAGAAGGAAATGTGTTTTTGGTACCCAATCTT
66 TGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTG-TTTTGGTACCCAATCTT
*
292889 GAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAGGGGATGAACTTTGATTTTA
130 GAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA
* * * * * * *
292954 AGGAAAATAAGGCAATGAAAAGATTTCCATGCAAAAGTAAATCATCAATATCATTTCTCCAAAT-
195 TGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATG
* *
293018 AAG-GAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACAAGAATCCATGTTTG
260 AGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG
* * * * * * * *
293082 TCTTATTTGGGGCACGAACTTAAACTTTGA-GATAATTGGTGTGAAAAATGTCTTTCTTGCAAAA
325 TCTCATTTGAGGCACGAACTTAGACTTT-ACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAA
* * * *
293146 CCAAAGCATCAATATCGTGTATCCTAAAT-AGAAGAAC-ATGTTTCTGGTGCCTAATCTTGAAAA
389 CCAAAACATCAATATCGCGTATCCT-AATGAGAAG-ACTATGTTTATGGTGCCTAATCCTGAAAA
* * *
293209 GAATGAGGATTAGTATGAGTATTC
452 GAATGGGGATTAGTTTGACTATTC
* * * ** *
293233 AAGTTTGTCTTATTTAAGAGACATACTTTGATTCAAGAAAAAACGGTGGAAAGAAAAGCCTTTCT
1 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* * * * * * * *
293298 TGTGACACCAAAGC-TGAAATGTCATGTATCCTAATGAAGGAAATTTGTTTCAGGTTCCCAATCC
66 TGCGACACCAAAGCAT-CAATGTCATGTATCCTATTGAAGGGAATGTGTTT-TGGTACCCAATCT
* * * * * * * *
293362 TAAAAACAGTAGAGACTGTTACAAGAATCAATGCTTGTCTTA-TTAAGGGAGGAACTTTGATTTT
129 TGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT
** * *
293426 ATAAAAAATAGGGCAAAGAATAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
194 ATGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
*
293491 GAAGAGAATGTGCTTATAGTGCCTAATCACAAAATGAAT-AAGGATCATTACTAGAATCCATGTT
259 GAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAA-GATCATTACTAGAATCCATGTT
* * * *
293555 TGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGGCCATTATTGCGAA
323 TGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAA
* * * * * *
293620 ACTAAAACATCAATATCGTGTATCTTAATGATAAGACTATGTTTATGGTGCCCAATCCTAAAAAG
388 ACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAG
* * *
293685 AATGGGGATTAGTATGGCTATTT
453 AATGGGGATTAGTTTGACTATTC
* * * * * * **
293708 GTGTTTATCTTATTTAAAAGACAAAGTTTGAATCCATCAGAAACGGCAGAAAGAAAAGCTTTTCT
1 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* * * *
293773 TGCGACACCAAAGCATCAATGTCATGTTTCCAATTTAAGGGAATGTGTTTTTGG-ATCCCAATCA
66 TGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTG-TTTTGGTA-CCCAATCT
* * * *
293837 TGAAAAGAATGG-GGTCTGTTATGAGAATCGATGCTAGTTTTATTTAAGGGATGAACTTTGATTT
129 TGAAAAGAATGGAGAT-TGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTT
* * * *
293901 TATGAAAAATAGGGCAAAAAAAAGATTTTGAT--AAAAAAAAATCATCAATATCATTTATCCTAA
193 TATGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAA
* * * * * *
293964 AGAGGAGGATATGCTTATAGTGCGTAATCATAAAATGAATGAAGATCATTACTAAAATCCATGTT
258 TGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTT
* * ***
294029 TGTCTCATTTGAGGCTCGAACTTAGACTCTACAAAAATTGGTCAAAAAAATGCCTTTCTTGCGAA
323 TGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAA
* ** * * *
294094 ACCAAAATATCAATATCGCGTAAACTAATGAGAAGACTGTGCTTATGGTGCCTAATCTTGAAAAG
388 ACCAAAACATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAG
* **
294159 AATAGGGATTAGGATGACTATTC
453 AATGGGGATTAGTTTGACTATTC
* * ** *
294182 ATGTTCGTATTATTTAAGAGACAAACTTTGATTCCATCAAAAATAGTGGAAGGAAAAGCTTTTCT
1 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* *
294247 TGCGACACCAAAGCATCAATGTCATGTATCCTATTGATGGGAATGTGTTTTTGG-ATCCCAATCA
66 TGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTG-TTTTGGTA-CCCAATCT
294311 TGAAAAGAATG
129 TGAAAAGAATG
294322 TGAAACCAAA
Statistics
Matches: 5117, Mismatches: 660, Indels: 137
0.87 0.11 0.02
Matches are distributed among these distances:
468 42 0.01
469 2 0.00
470 51 0.01
471 303 0.06
472 36 0.01
473 93 0.02
474 874 0.17
475 1422 0.28
476 1283 0.25
477 498 0.10
478 102 0.02
479 4 0.00
480 87 0.02
481 316 0.06
482 4 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (475 bp):
ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCT
TGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTGGTACCCAATCTTG
AAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAT
GGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA
GGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGT
CTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACC
AAAACATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAT
GGGGATTAGTTTGACTATTC
Found at i:289141 original size:159 final size:158
Alignment explanation
Indices: 288002--294321 Score: 1774
Period size: 159 Copynumber: 39.9 Consensus size: 158
287992 GAATAGATTT
* * * *
288002 ATGTTTGCCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGA-GGAAAGAAAAGCTTTTC
1 ATGTTTGTCTTATTTAAGGGACGAACTTTGATTCTATCAAAAA-TGATGGAAAGAAAAGCTTTTC
* * ** * * * *
288066 TTGCGACACCAAAGCGTCAAGGTCATGTATCCTACTAAAGGGAATGTGTTT-TAGGTTCCCAATC
65 TTGCGAAACCAAAGCATCAATATCATGTATCC-AATGAAGGGAATGTGTTTAT-GGTGCCTAATC
* * * *
288130 CTGAAAATAATGGAGACTGCTATGAGATTCG
128 CTGAAAAGAATGGAGATTGTTATGAGAATCG
* ** * * *** * *
288161 ATGCTTGTCTTATTTAAGGGTTGAATTTTGATTATAAGGAAAAT-A-GCGCAAATAAAAG-ATTT
1 ATGTTTGTCTTATTTAAGGGACGAACTTTGATTCTATCAAAAATGATG-G-AAAGAAAAGCTTTT
* * ** * * * * * *
288223 CTAAGCAAAATAAAATCATCAATATCATTTATCGTAATG-TGGAGAATGTGCTTATAGTGCCTAA
64 CT-TGCGAAACCAAAGCATCAATATCATGTATC-CAATGAAGG-GAATGTGTTTATGGTGCCTAA
* * ** *
288287 TCAC--AAAATAATTGAAGATCATTACT-AGAATCC
126 TC-CTGAAAAGAA-TGGAGATTGTTA-TGAGAATCG
* * * * * * * * * * *
288320 TTGTTTGTC-TATTTGAGGCAAGAACTTAGACT-TAACAAAAATTGGTGGGAA-AAATGCCTTTC
1 ATGTTTGTCTTATTTAAGGGACGAACTTTGATTCTATCAAAAA-TGATGGAAAGAAAAGCTTTTC
* * * * * *
288382 TTGCAAAACCAAAACATCAATAT--TGCATATCCTAATG-AGAAGACTATATTTATGGTGCCTAA
65 TTGCGAAACCAAAGCATCAATATCATG--TATCC-AATGAAG-GGAATGTGTTTATGGTGCCTAA
* * * * *
288444 CCCTGAAAAGAATGGGGTTTAGTT-TGACTATTC-
126 TCCTGAAAAGAATGGAGATT-GTTATGA-GAATCG
* * * * * * *
288477 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATGAAAAACGGTGGAAACAAAAGCTTTTCT
1 ATGTTTGTCTTATTTAAGGGACGAACTTTGATTCTATCAAAAATGATGGAAAGAAAAGCTTTTCT
* * * * * * * * * *
288542 TGCGACATCAAAGCATCAATGTCCTATATCCTATTGAAGGGAATGTGCTTT-TAGTACCCAATCT
66 TGCGAAACCAAAGCATCAATATCATGTATCC-AATGAAGGGAATGTG-TTTATGGTGCCTAATCC
* ** *
288606 TGAAAAGAATGGAGATTCTTACAAGAATTG
129 TGAAAAGAATGGAGATTGTTATGAGAATCG
* * * * *** * * * *
288636 ATGCTTGTCTTATTTAGGGGATGAACTTTGATTTTATGGCAAATAAGGGCAAAGAAAAGATTTCC
1 ATGTTTGTCTTATTTAAGGGACGAACTTTGATTCTATCAAAAATGATGG-AAAGAAAAGCTTTTC
* * ** * * * *
288701 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATG-AGGAGAATGTGCTTATAGTGCCTAAT-
65 TTGCGAAACCAAAGCATCAATATCATGTATCC-AATGAAGG-GAATGTGTTTATGGTGCCTAATC
* ** ** *
288764 C-GCAAAATGACTAAAGATCATTACT-AGAATCC
128 CTG-AAAA-GAATGGAGATTGTTA-TGAGAATCG
* ** * * * * *
288796 ATGTTTGTCTCA-TTCGGGGCACAAACTTAGACTT-TA-CAAAAATTGGTGGGAAA-AATA-CGT
1 ATGTTTGTCTTATTTAAGGG-ACGAACTTTGA-TTCTATCAAAAA-TGAT-GGAAAGAAAAGCTT
** ** * * *
288856 TTCTTGCGAAACCAAAATATCAATATCGCGTATCGTAATG-A--GAAGCTATATTTATGGTGCCT
62 TTCTTGCGAAACCAAAGCATCAATATCATGTATC-CAATGAAGGGAA--TGTGTTTATGGTGCCT
* * *
288918 ACTCCTGAAAAGAATGG-GAATTAGTT-TGACTATTCG
124 AATCCTGAAAAGAATGGAG-ATT-GTTATGA-GAATCG
* * * * *
288954 -TGTTTGTCTTATTTAAGAGACAAACTTTGGTTCCATCAAAAACGATGGAAAGAAAAGCTTTTCT
1 ATGTTTGTCTTATTTAAGGGACGAACTTTGATTCTATCAAAAATGATGGAAAGAAAAGCTTTTCT
* * * * * *
289018 TGCGACACCAAAGCATCAATGTCATGTATCCAACTGAAGGGAATGTGTTTTTGGTACCCAATCTT
66 TGCGAAACCAAAGCATCAATATCATGTATCCAA-TGAAGGGAATGTGTTTATGGTGCCTAATCCT
289083 GAAAAGAATGGAGATTGTTATGAGAATCG
130 GAAAAGAATGGAGATTGTTATGAGAATCG
* * * *** * * * *
289112 ATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT-AGGGCATGCAAAAG-TTTTG
1 ATGTTTGTCTTATTTAAGGGACGAACTTTGATTCTATCAAAAATGATGGAAAG-AAAAGCTTTTC
* * * ** * * * *
289175 ATACAAAAGAAAATCATCAATATCATTTATCCTAATG-AGGAGAATGTGCTTATAGTGCCTAATA
65 TTGCGAAACCAAAGCATCAATATCATGTATCC-AATGAAGG-GAATGTGTTTATGGTGCCTAAT-
* * ** *
289239 AC--AAAATGAATGAAGATCATTACT-AGAATCC
127 CCTGAAAA-GAATGGAGATTGTTA-TGAGAATCG
* * * * * * * * *
289270 ATGTTTGTCTCATTTGAGGCATGAACTTAGACTT-TA-CAAAAATTGGTGGGAA-AAATGCCTTT
1 ATGTTTGTCTTATTTAAGGGACGAACTTTGA-TTCTATCAAAAA-TGATGGAAAGAAAAGCTTTT
* * * * ** *
289332 CTTGCAAAACCAAAACATCAATATCGTGTCTCCTAATGAGAAGACAATGTG--TATGGCGCCTAA
64 CTTGCGAAACCAAAGCATCAATATCATGTATCC-AAT--GAAGGGAATGTGTTTATGGTGCCTAA
* * * *
289395 TCCAGAAAAGAATGGGGATTAG-TAGGAGTATTC-
126 TCCTGAAAAGAATGGAGATT-GTTATGAG-AATCG
* * * * * *
289428 ATGTTCGCCTTATTCAAGAGACAAACTTTGATTCTATCAAAAACGGA-GGAAAGAAAAGCTTTTC
1 ATGTTTGTCTTATTTAAGGGACGAACTTTGATTCTATCAAAAA-TGATGGAAAGAAAAGCTTTTC
* ** * * * *
289492 TTGCTAAACCAAAGCATCAAGGTCATGTATCCTACTGAAGGGAATGTGTTT-TAGGTTCCCATTC
65 TTGCGAAACCAAAGCATCAATATCATGTATCC-AATGAAGGGAATGTGTTTAT-GGTGCCTAATC
* * * * *
289556 CTGGAAATAATGGAGACTGCTACGAGAATCG
128 CTGAAAAGAATGGAGATTGTTATGAGAATCG
* ** ** * * *** * *
289587 ATGCTCATCTTATTTAAGGGTTGAATTTTGATTATAAGGAAAAT-A-GCGCAAATAAAAGATTTT
1 ATGTTTGTCTTATTTAAGGGACGAACTTTGATTCTATCAAAAATGATG-G-AAAGAAAAGCTTTT
* * ** * * * * * * *
289650 -TAAGCAAAATAAAATCATCAATATCATTTATCGTATTG-TGGAGAATGTGCTTATAGTGCCTAA
64 CT-TGCGAAACCAAAGCATCAATATCATGTATC-CAATGAAGG-GAATGTGTTTATGGTGCCTAA
* * * *
289713 TCAC--AAAATAACTGAAGATCAT-TTCT-AGAATCC
126 TC-CTGAAAAGAA-TGGAGAT--TGTTATGAGAATCG
* * * * * * * * * * *
289746 TTGTTTGTC-TATTTGAGGCAAGAACTTAGACT-TAACAAAAATTGGTGGGAA-AAATGCCTTTC
1 ATGTTTGTCTTATTTAAGGGACGAACTTTGATTCTATCAAAAA-TGATGGAAAGAAAAGCTTTTC
* * * * *
289808 TTGCGAAACCAAAACATCAATAT--TGCATATCCAAATG-AGAAGACTATATTTATGGTGCCTAA
65 TTGCGAAACCAAAGCATCAATATCATG--TATCC-AATGAAG-GGAATGTGTTTATGGTGCCTAA
* * * *
289870 CCCTGAAAAGAATGGGGATTAGTT-TGACTATTC-
126 TCCTGAAAAGAATGGAGATT-GTTATGA-GAATCG
* * * ** * * *
289903 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATGGAAAACGGTGGAAACAAAAGCTTTTCT
1 ATGTTTGTCTTATTTAAGGGACGAACTTTGATTCTATCAAAAATGATGGAAAGAAAAGCTTTTCT
* * * * * * * * *
289968 TGCGACATCAAAGCATCAATGTCATGTATCCTATTAAAGGGAATGTGTTT-TTGTACCCAATCTT
66 TGCGAAACCAAAGCATCAATATCATGTATCC-AATGAAGGGAATGTGTTTATGGTGCCTAATCCT
* * *
290032 GAAAATAATGGAGATTGTTACGATAATCG
130 GAAAAGAATGGAGATTGTTATGAGAATCG
* * * * * * * **
290061 ATGCTTGTCTTATTTAAGGGATGAACTTTAATTTTATGAAAAATAAGGGCAAAGAAAAAATTTTC
1 ATGTTTGTCTTATTTAAGGGACGAACTTTGATTCTATCAAAAATGATGG-AAAGAAAAGCTTTTC
* ** * * * * *
290126 ATTG-AAAAGAAAATCATCAATATCATTTATCCTAATG-AGGAGAATATGCTTATAGTGCCTAAT
65 -TTGCGAAACCAAAGCATCAATATCATGTATCC-AATGAAGG-GAATGTGTTTATGGTGCCTAAT
* ** *
290189 CAC--AAAATGAATGAAGATCATTACT-AGAATCC
127 C-CTGAAAA-GAATGGAGATTGTTA-TGAGAATCG
* * * * * * * *
290221 ATGTTTGTCTCACTTGAGGCACGAACTTAGACTT-T-GCAAAAATTGGTGG---GAAAATGCCTT
1 ATGTTTGTCTTATTTAAGGGACGAACTTTGA-TTCTATCAAAAA-TGATGGAAAGAAAA-GCTTT
** ** ** * * *
290281 TCTTTTGAAACCAAAATATCAATATCGCGTATCCTAATG-AGAAGATTGTGCTTATGGTGCCTAA
63 TCTTGCGAAACCAAAGCATCAATATCATGTATCC-AATGAAG-GGAATGTGTTTATGGTGCCTAA
* *
290345 TCCTGAAAAGAATAGG-GATTAGTT-TGACTATTC-
126 TCCTGAAAAGAAT-GGAGATT-GTTATGA-GAATCG
* * * * * *
290378 ATGTTAGTATTATTTAAGAGACAAACTTTGATTCCATCAAAAAT-AGTGGAAGGAAAAGCTTTTC
1 ATGTTTGTCTTATTTAAGGGACGAACTTTGATTCTATCAAAAATGA-TGGAAAGAAAAGCTTTTC
* * * * * * * *
290442 TTGCGACACCAGAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTACCCAATCT
65 TTGCGAAACCAAAGCATCAATATCATGTATCC-AATGAAGGGAATGTGTTTATGGTGCCTAATCC
290507 TGAAAAGAATGGAGATTGTTATGAGAATCG
129 TGAAAAGAATGGAGATTGTTATGAGAATCG
* * * * *** * *
290537 ATGCTTGTCTTATTTAAGAGATGAACTTTGATTTTAAGGAAAAT-A-GGCCAAACAAAAGATTTT
1 ATGTTTGTCTTATTTAAGGGACGAACTTTGATTCTATCAAAAATGATGG--AAAGAAAAGCTTTT
** * * ** * * * * * * *
290600 GATACAAAAGAAAATCATCAATATAATTTATCCTAAAG-AGGATAATGTGCTTATAGTGCCTAAT
64 CTTGCGAAACCAAAGCATCAATATCATGTATCC-AATGAAGG-GAATGTGTTTATGGTGCCTAAT
* * * ** *
290664 CAT-AAAACTAATGAAGATCATTACT-AGAATCC
127 CCTGAAAA-GAATGGAGATTGTTA-TGAGAATCG
* * * * * * * * *
290696 ATGTTTGTCTCAATTGAGGCACGAACTTAGACTCTA-CAAAAATTGGTCGAAA-AAAAGCCTTTC
1 ATGTTTGTCTTATTTAAGGGACGAACTTTGATTCTATCAAAAA-TGATGGAAAGAAAAGCTTTTC
* * ** ** * *
290759 TTACGAAACCAAAACATCAATATCGCGTATCCTAATGAAAAGACA-GTTTTTTTGGTGCCTAATC
65 TTGCGAAACCAAAGCATCAATATCATGTATCC-AATGAAGGGA-ATGTGTTTATGGTGCCTAATC
* * * *
290823 CTAAAAAGAATGGGGATTAG-TATGACTATTC-
128 CTGAAAAGAATGGAGATT-GTTATGA-GAATCG
* ** * * *
290854 ATATTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCT
1 ATGTTTGTCTTATTTAAGGGACGAACTTTGATTCTATCAAAAATGATGGAAAGAAAAGCTTTTCT
* * * * * *
290919 TGCGACACCAAAGCATCAATATCATGTATCCTATTGAAGGGAATGTGTTTTTGGTACCCAATCTT
66 TGCGAAACCAAAGCATCAATATCATGTATCC-AATGAAGGGAATGTGTTTATGGTGCCTAATCCT
*
290984 GAAAAGAATGGAGATTGTTACGAGAATCG
130 GAAAAGAATGGAGATTGTTATGAGAATCG
* * * ** * * * *
291013 ATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTTG
1 ATGTTTGTCTTATTTAAGGGACGAACTTTGATTCTATCAAAAATGATGG-AAAGAAAAGCTTTTC
* * * ** * * * * *
291078 ATACAAAAGAAAACCATCAATATCAT-TGGTCCTAAAG-AGGAGAATGTGGTTATAGTGCCTAAT
65 TTGCGAAACCAAAGCATCAATATCATGT-ATCC-AATGAAGG-GAATGTGTTTATGGTGCCTAAT
* ** *
291141 AAC--AAAATGAAT-GAGGATCATTACT-AGAATCT
127 -CCTGAAAA-GAATGGA-GATTGTTA-TGAGAATCG
* * * * * * * * *
291173 ATGTTTGTCTCGA-TTGAGGCATGAACTTAGACTT-TA-CAAAAATTGGTGGGAA-AAATGCCTT
1 ATGTTTGTCT-TATTTAAGGGACGAACTTTGA-TTCTATCAAAAA-TGATGGAAAGAAAAGCTTT
* * * ** *
291234 TCTTGCAAAACCAAAACATCAATATCATTTATCCTAATG-AGAAAACTATGTTTATGGTGCCTAA
63 TCTTGCGAAACCAAAGCATCAATATCATGTATCC-AATGAAGGGAA-TGTGTTTATGGTGCCTAA
* * *** *
291298 TCCTGAAAAAAATGG-GCAATACAATGAGTATTC-
126 TCCTGAAAAGAATGGAG-ATTGTTATGAG-AATCG
* * ** * *
291331 AAGTTTGTCTTATTTGAGGGATAAACTTTGATTCTATCAAAAATGGTTGAAAGAAAAGCTTTTCT
1 ATGTTTGTCTTATTTAAGGGACGAACTTTGATTCTATCAAAAATGATGGAAAGAAAAGCTTTTCT
* * ** * * *
291396 TGC-AACACCAAAGCATCAATGTCATTGTATCCTATTGTTGGGAATGTGTTTTTGGTTCCCAATC
66 TGCGAA-ACCAAAGCATCAATATCA-TGTATCC-AATGAAGGGAATGTGTTTATGGTGCCTAATC
* * * *
291460 TTGAAAAGAATGG-GGTCTATTACGAGAATCG
128 CTGAAAAGAATGGAGAT-TGTTATGAGAATCG
* * * * * ** * * *
291491 ATGCTTATCTTATTTAAGGGAAGAACTTTGATTTTATGGAAAAAAAAAAGGGCAAAAAAAAGATT
1 ATGTTTGTCTTATTTAAGGGACGAACTTTGATTCTAT---CAAAAATGATGG-AAAGAAAAGCTT
* ** * * * * * * *
291556 TTCATT-CAAAAGAAAATCACCAATATCATTTATCCTAATG-AGGAGAATATGCTGATAGTGCCT
62 TTC-TTGCGAAACCAAAGCATCAATATCATGTATCC-AATGAAGG-GAATGTGTTTATGGTGCCT
* * ** *
291619 AATAAC--AAAATGAAT-AAGGATCATTACT-AGAATCC
124 AAT-CCTGAAAA-GAATGGA-GATTGTTA-TGAGAATCG
*** * * * * * * * * *
291654 ATGTTTGTCCCGTTTGAGGCATGAACTTAGACTT-TA-CGAAAATTGGTGGGAA-AAATGCCTTT
1 ATGTTTGTCTTATTTAAGGGACGAACTTTGA-TTCTATC-AAAAATGATGGAAAGAAAAGCTTTT
* * * * * *
291716 CTTGCAAAACCAAAACATCAATATCGTGTATCCTAATG-AGAAGACA-ATGTTTATGGCGCCTAA
64 CTTGCGAAACCAAAGCATCAATATCATGTATCC-AATGAAG-GGA-ATGTGTTTATGGTGCCTAA
** * *
291779 TCCAAAAAAGAATGGGGATTAGTT-TGAGTATTC-
126 TCCTGAAAAGAATGGAGATT-GTTATGAG-AATCG
* * * * * * *
291812 ATGTCTGCCTTATTCAAGAGACAAACATTGATTCTATCAAAAACGGA-GGAAAGAAAAGCTTTTC
1 ATGTTTGTCTTATTTAAGGGACGAACTTTGATTCTATCAAAAA-TGATGGAAAGAAAAGCTTTTC
* * * ** * * *
291876 TTACGACACCAAAGCGTCAAGGTCATGTATCCTACTGAAGGGAATGTGTTT-TAGGTTCCCAATC
65 TTGCGAAACCAAAGCATCAATATCATGTATCC-AATGAAGGGAATGTGTTTAT-GGTGCCTAATC
* * * * *
291940 CTGAAAATAATGGAGACTGCTACGAGAATTG
128 CTGAAAAGAATGGAGATTGTTATGAGAATCG
* * ** * *** * *
291971 ATGCTCGTCTTATTTAAGGGTTGAACTTTGATTATAAGGAAAAT-A-GCGCAAATAAAAGATTTT
1 ATGTTTGTCTTATTTAAGGGACGAACTTTGATTCTATCAAAAATGATG-G-AAAGAAAAGCTTTT
* * ** * * * * * * *
292034 -TAAGCAAAATAAAATCATCAATATCATTTATCGTATTG-TGGAGAATGTGCTTATAGTGCCTAA
64 CT-TGCGAAACCAAAGCATCAATATCATGTATC-CAATGAAGG-GAATGTGTTTATGGTGCCTAA
* * ** *
292097 TCAC--AAAATAATTGAAGATCATTACT-AGAATCC
126 TC-CTGAAAAGAA-TGGAGATTGTTA-TGAGAATCG
* * * * * * * * * ** *
292130 TTGTTTGT-TTATTTGAGGCAAGAACTTAGACTT-TAACAAAAATTGGTGG-GACAAATCCCTTT
1 ATGTTTGTCTTATTTAAGGGACGAACTTTGA-TTCTATCAAAAA-TGATGGAAAGAAAAGCTTTT
* * * * * *
292192 CTT-CTGAAACCAAAACATCAATATTC-CGTATCCTAATG-AGAAGACTATATTTATGGTGCCTA
64 CTTGC-GAAACCAAAGCATCAATA-TCATGTATCC-AATGAAG-GGAATGTGTTTATGGTGCCTA
* * * *
292254 ACCCTGAAAAGAATGGGGATTAGTT-TGACTATTC-
125 ATCCTGAAAAGAATGGAGATT-GTTATGA-GAATCG
* * * * * * *
292288 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATGAAAAACGGTGGAAACAAAAGCTTTTCT
1 ATGTTTGTCTTATTTAAGGGACGAACTTTGATTCTATCAAAAATGATGGAAAGAAAAGCTTTTCT
* * * * * * ** * *
292353 TGTGACATCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGCACCCAATCTT
66 TGCGAAACCAAAGCATCAATATCATGTATCC-AATGAAGGGAATGTGTTTATGGTGCCTAATCCT
*
292418 GAAAAGAATGGAGATTGTTACGAGAATCG
130 GAAAAGAATGGAGATTGTTATGAGAATCG
* * * * ** * * * * *
292447 ATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCCAAGAAAAGATTTCC
1 ATGTTTGTCTTATTTAAGGGACGAACTTTGATTCTATCAAAAATGATGG-AAAGAAAAGCTTTTC
* * ** * * * * * *
292512 ATGCAAAAGAAAATCATCAATATCATTTATCCTAA-CAAGGAGAATGTGCTTATAGTGCCTGATC
65 TTGCGAAACCAAAGCATCAATATCATGTATCC-AATGAAGG-GAATGTGTTTATGGTGCCTAATC
* * ** *
292576 AC--AAAATGACTGAAGATCATT-T----ATCC
128 -CTGAAAA-GAATGGAGATTGTTATGAGAATCG
* * * * * * * * *
292602 TTTTTTGTC-TATTTGAGGCAAGAACTTAGACTT-TA-CAAAAATTGGTGGGAA-AAATGCTTTT
1 ATGTTTGTCTTATTTAAGGGACGAACTTTGA-TTCTATCAAAAA-TGATGGAAAGAAAAGCTTTT
* * * * * * * *
292663 CTTACGAAACCAAAACATCAATATCACGTATCCTAATG-AGAAGACTATATTTATGGTGCCCAAT
64 CTTGCGAAACCAAAGCATCAATATCATGTATCC-AATGAAG-GGAATGTGTTTATGGTGCCTAAT
* * *
292727 CTTGAAAAGAATAGG-GATTAGTT-TGACTATTC-
127 CCTGAAAAGAAT-GGAGATT-GTTATGA-GAATCG
* * * * * * **
292759 TTGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATAAAAAACGGCGGAAAGAAAAGCTTTTCT
1 ATGTTTGTCTTATTTAAGGGACGAACTTTGATTCTATCAAAAATGATGGAAAGAAAAGCTTTTCT
* * * * * * * * *
292824 TGTGACACCAAAGCATCAATGTCATGTATCCTATAGAAGGAAATGTGTTTTTGGTACCCAATCTT
66 TGCGAAACCAAAGCATCAATATCATGTATCCAAT-GAAGGGAATGTGTTTATGGTGCCTAATCCT
*
292889 GAAAAGAATGGAGATTGTTACGAGAATCG
130 GAAAAGAATGGAGATTGTTATGAGAATCG
* * * * *** * * * *
292918 ATGCTTGTCTTATTTAGGGGATGAACTTTGATTTTAAGGAAAAT-AAGGCAATGAAAAGATTTCC
1 ATGTTTGTCTTATTTAAGGGACGAACTTTGATTCTATCAAAAATGATGG-AAAGAAAAGCTTTTC
* * ** * * * * *
292982 ATGCAAAAGTAAATCATCAATATCATTTCTCCAAAT-AA-GGAATGTGCTTATAGTGCCTAATCA
65 TTGCGAAACCAAAGCATCAATATCATGTATCC-AATGAAGGGAATGTGTTTATGGTGCCTAATC-
* ** ** *
293045 C--AAAATGAATGAAGATCATTACAAGAATCC
128 CTGAAAA-GAATGGAGATTGTTATGAGAATCG
* ** * * * * *
293075 ATGTTTGTCTTATTT-GGGGCACGAACTTAAACTT-TGA-GATAATTGGTGTG-AA-AAATG-TC
1 ATGTTTGTCTTATTTAAGGG-ACGAACTTTGA-TTCT-ATCAAAAATGATG-GAAAGAAAAGCT-
* * ** *
293134 TTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAAATAGAA--GAACATGTTTCTGGTGCC
61 TTTCTTGCGAAACCAAAGCATCAATATCATGTATCC--AAT-GAAGGGAATGTGTTTATGGTGCC
* *
293197 TAATCTTGAAAAGAAT-GAGGATTAG-TATGAGTATTC-
123 TAATCCTGAAAAGAATGGA-GATT-GTTATGAG-AATCG
* * * ** * * *
293233 AAGTTTGTCTTATTTAAGAGAC-ATACTTTGATTCAAGAAAAAACGGTGGAAAGAAAAGCCTTTC
1 ATGTTTGTCTTATTTAAGGGACGA-ACTTTGATTCTATCAAAAATGATGGAAAGAAAAGCTTTTC
* * * * * * * *
293297 TTGTGACACCAAAGC-TGAAATGTCATGTATCCTAATGAAGGAAATTTGTTTCA-GGTTCCCAAT
65 TTGCGAAACCAAAGCAT-CAATATCATGTATCC-AATGAAGGGAATGTGTTT-ATGGTGCCTAAT
* * * * * ** *
293360 CCTAAAAACAGTAGAGACTGTTACAAGAATCA
127 CCTGAAAAGAATGGAGATTGTTATGAGAATCG
* * * * * * * *
293392 ATGCTTGTCTTA-TTAAGGGAGGAACTTTGATTTTATAAAAAAT-AGGGCAAAGAATAGATTTCC
1 ATGTTTGTCTTATTTAAGGGACGAACTTTGATTCTATCAAAAATGATGG-AAAGAAAAGCTTTTC
* * ** * * * * *
293455 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAAGAGAATGTGCTTATAGTGCCTAATCA
65 TTGCGAAACCAAAGCATCAATATCATGTATCC-AATGAAGGGAATGTGTTTATGGTGCCTAATC-
* ** *
293520 C--AAAATGAAT-AAGGATCATTACT-AGAATCC
128 CTGAAAA-GAATGGA-GATTGTTA-TGAGAATCG
* * * * * * * * **
293550 ATGTTTGTCTCATTTGAGGCATGAACTTAGACTT-TA-CAAAAATTGGTGGGAA-AAAGGCCATT
1 ATGTTTGTCTTATTTAAGGGACGAACTTTGA-TTCTATCAAAAA-TGATGGAAAGAAAAGCTTTT
* * * * * * * * *
293612 ATTGCGAAACTAAAACATCAATATCGTGTATCTTAATGATA-AGACTATGTTTATGGTGCCCAAT
64 CTTGCGAAACCAAAGCATCAATATCATGTATC-CAATGA-AGGGAATGTGTTTATGGTGCCTAAT
* * * *
293676 CCTAAAAAGAATGGGGATTAG-TATG-GCTATTTG
127 CCTGAAAAGAATGGAGATT-GTTATGAG--AATCG
* ** * * * * * * ***
293709 -TGTTTATCTTATTTAAAAGACAAAGTTTGAATCCATCAGAAACGGCAGAAAGAAAAGCTTTTCT
1 ATGTTTGTCTTATTTAAGGGACGAACTTTGATTCTATCAAAAATGATGGAAAGAAAAGCTTTTCT
* * * * * * *
293773 TGCGACACCAAAGCATCAATGTCATGTTTCCAATTTAAGGGAATGTGTTTTTGGAT-CCCAATCA
66 TGCGAAACCAAAGCATCAATATCATGTATCCAA-TGAAGGGAATGTGTTTATGG-TGCCTAATCC
*
293837 TGAAAAGAATGG-GGTCTGTTATGAGAATCG
129 TGAAAAGAATGGAGAT-TGTTATGAGAATCG
* * * * * * * * * *
293867 ATGCTAGTTTTATTTAAGGGATGAACTTTGATTTTATGAAAAAT-AGGGCAAAAAAAAGATTTTG
1 ATGTTTGTCTTATTTAAGGGACGAACTTTGATTCTATCAAAAATGATGG-AAAGAAAAGCTTTTC
* * ** * * * * * * * *
293931 AT--AAAAAAAAATCATCAATATCATTTATCCTAAAG-AGGAGGATATGCTTATAGTGCGTAATC
65 TTGCGAAACCAAAGCATCAATATCATGTATCC-AATGAAGG-GAATGTGTTTATGGTGCCTAATC
* * ** * *
293993 AT-AAAATGAATGAAGATCATTACT-AAAATCC
128 CTGAAAA-GAATGGAGATTGTTA-TGAGAATCG
* * ** * * *
294024 ATGTTTGTCTCATTTGAGGCTCGAACTTAGACTCTA-CAAAAAT--TGGTCAAA-AAAATGCCTT
1 ATGTTTGTCTTATTTAAGGGACGAACTTTGATTCTATCAAAAATGATGG--AAAGAAAA-GCTTT
** ** * * * * *
294085 TCTTGCGAAACCAAAATATCAATATCGCGTAAACTAATG-AGAAGACTGTGCTTATGGTGCCTAA
63 TCTTGCGAAACCAAAGCATCAATATCATGT-ATCCAATGAAG-GGAATGTGTTTATGGTGCCTAA
* * * *
294149 TCTTGAAAAGAATAGG-GATTAG-GATGACTATTC-
126 TCCTGAAAAGAAT-GGAGATT-GTTATGA-GAATCG
* * * * * *
294182 ATGTTCGTATTATTTAAGAGACAAACTTTGATTCCATCAAAAAT-AGTGGAAGGAAAAGCTTTTC
1 ATGTTTGTCTTATTTAAGGGACGAACTTTGATTCTATCAAAAATGA-TGGAAAGAAAAGCTTTTC
* * * * * *
294246 TTGCGACACCAAAGCATCAATGTCATGTATCCTATTGATGGGAATGTGTTTTTGGAT-CCCAATC
65 TTGCGAAACCAAAGCATCAATATCATGTATCC-AATGAAGGGAATGTGTTTATGG-TGCCTAATC
*
294310 ATGAAAAGAATG
128 CTGAAAAGAATG
294322 TGAAACCAAA
Statistics
Matches: 4362, Mismatches: 1428, Indels: 743
0.67 0.22 0.11
Matches are distributed among these distances:
152 59 0.01
153 14 0.00
154 22 0.01
155 23 0.01
156 87 0.02
157 508 0.12
158 1308 0.30
159 1758 0.40
160 447 0.10
161 26 0.01
162 6 0.00
163 69 0.02
164 31 0.01
165 4 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (158 bp):
ATGTTTGTCTTATTTAAGGGACGAACTTTGATTCTATCAAAAATGATGGAAAGAAAAGCTTTTCT
TGCGAAACCAAAGCATCAATATCATGTATCCAATGAAGGGAATGTGTTTATGGTGCCTAATCCTG
AAAAGAATGGAGATTGTTATGAGAATCG
Found at i:294500 original size:202 final size:202
Alignment explanation
Indices: 294154--294523 Score: 695
Period size: 202 Copynumber: 1.8 Consensus size: 202
294144 CCTAATCTTG
*
294154 AAAAGAATAGGGATTAGGATGACTATTCATGTTCGTATTATTTAAGAGACAAACTTTGATTCCAT
1 AAAAGAATAGGGATTAGGATGACTATTCATGTTCATATTATTTAAGAGACAAACTTTGATTCCAT
* *
294219 CAAAAATAGTGGAAGGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGA
66 CAAAAACAGTGGAAGGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTAA
294284 TGGGAATGTGTTTTTGGATCCCAATCATGAAAAGAATGTGAAACCAAAGCATCAAGAACTTTGAT
131 TGGGAATGTGTTTTTGGATCCCAATCATGAAAAGAATGTGAAACCAAAGCATCAAGAACTTTGAT
294349 TTTATCA
196 TTTATCA
*
294356 AAAAGAATAGGGATTAGTATGACTATTCATGTTCATATTATTTAAGAGACAAACTTTGATTCCAT
1 AAAAGAATAGGGATTAGGATGACTATTCATGTTCATATTATTTAAGAGACAAACTTTGATTCCAT
*
294421 CAAAAACAGTGGAAGGAAAAGCTTTTCTTGCGACACCAAAGCTTCAATGTCATGTATCCTATTAA
66 CAAAAACAGTGGAAGGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTAA
294486 TGGGAATGTGTTTTTGGATCCCAATCATGAAAAGAATG
131 TGGGAATGTGTTTTTGGATCCCAATCATGAAAAGAATG
294524 GGGTCTGTTA
Statistics
Matches: 163, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
202 163 1.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (202 bp):
AAAAGAATAGGGATTAGGATGACTATTCATGTTCATATTATTTAAGAGACAAACTTTGATTCCAT
CAAAAACAGTGGAAGGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTAA
TGGGAATGTGTTTTTGGATCCCAATCATGAAAAGAATGTGAAACCAAAGCATCAAGAACTTTGAT
TTTATCA
Found at i:295598 original size:157 final size:158
Alignment explanation
Indices: 294960--297986 Score: 632
Period size: 159 Copynumber: 19.1 Consensus size: 158
294950 TTTTGTTCCC
* * * *
294960 AATCTTGAAAAGAATGGGGTCTGTTACGAGGATCGATGCTTGTCTTATTTAAGGGATGAACTTTG
1 AATCATGAAAAGAATGGGGTCTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGACGAACTTTG
** * * * *
295025 ATTTTATGGAAAATAAGGGCAAAGAAAAGACTTTCATTCAAAATAAAATCATCAATATCGTTTAT
66 ATTTTATCAAAAAT-AGGG-AAAGAAAAGACTTTCATGCAAAACAAAATCATCAATATCATGTAT
295090 CCTAATA-AGGAGAATGTGCTTATAGTGCCT
129 CCTAA-AGAGGAGAATGTGCTTATAGTGCCT
* * * * * * * *
295120 AATCA-CAAAATGAATGGAGATC-ATTACT-AGAATCCATGTTTGTCTCATTTGAGGCACGAACT
1 AATCATGAAAA-GAATGG-GGTCTGTTA-TGAGAATCGATGCTTGTCTTATTTAAGGGACGAACT
* * * ** * * * **
295182 TAGAATTT-TCAAAAAT-TGGAGGGAAAATGCCTTTCTTGCGAAACCAAAAT-ATCAATATCGCG
63 TTGATTTTATCAAAAATAGGGAAAGAAAA-GACTTTCATGC-AAAACAAAATCATCAATATCATG
* * * * *
295244 TATCCTAATGAGAAGACTGTGTTTATGGTGCCT
126 TATCCTAAAGAGGAGAATGTGCTTATAGTGCCT
* * * * * * * * *
295277 AATCTTGAAAAGAATAGGGTAATAG-TATGACTATTC-ATGTTTGTATTATTTAAGAGACAAACT
1 AATCATGAAAAGAATGGGGT-CT-GTTATGA-GAATCGATGCTTGTCTTATTTAAGGGACGAACT
** * * * * * * *
295340 TTGATTCCATCAAATACA-ATGGAAAGAAAAG-CTTTTCTTGCGACACTAAAGCATCAATGTCAT
63 TTGATTTTATCAAA-A-ATAGGGAAAGAAAAGAC-TTTCATGCAAAACAAAATCATCAATATCAT
** * * * *
295403 GTATCCTATTGATGG-GAATGTGTTTTTGGAT-CCC
125 GTATCCTAAAGA-GGAGAATGTGCTTATAG-TGCCT
* *
295437 AATCATGAAAAGAATGGGGTCTGTTATGAGAATCGATGCTAGTCTTATTTAAGGGATGAACTTTG
1 AATCATGAAAAGAATGGGGTCTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGACGAACTTTG
* * * * * * *
295502 ATTTTATGAAAAATAGGGAAA-AAAAGATTTTGATACAAAAGAAAATCATCTATATCATTTATCC
66 ATTTTATCAAAAATAGGGAAAGAAAAGACTTTCATGCAAAACAAAATCATCAATATCATGTATCC
295566 TAAAGAGGAGAATGTGCTTATAGTGCCT
131 TAAAGAGGAGAATGTGCTTATAGTGCCT
** * ** * * ** * * * * *
295594 AATCAT-AAAATGAATAAAGATC-ACTACT-AGAATCCATGTTTACCTCATTTGAGGCATGCACT
1 AATCATGAAAA-GAAT-GGGGTCTGTTA-TGAGAATCGATGCTTGTCTTATTTAAGGGACGAACT
* * * * * * *
295656 TTGACTTTA-CTAAAATTGCTGG---GAAAATGCCTTTCTTGTAAAACCAAAAT-ATCAATATTA
63 TTGATTTTATCAAAAATAG--GGAAAGAAAA-GACTTTCATGCAAAA-CAAAATCATCAATATCA
* * * * * * * *
295716 TTTATTCTAATGAGAAGACTATGTTTATGGTGCCT
124 TGTATCCTAAAGAGGAGAATGTGCTTATAGTGCCT
* * * *** ** * * * * * **
295751 AATCCTTAAAAAAATGGGCAATGCAATGAGTATTC-AAGTTTGTCTTAATTGAGGGAAAAACTTT
1 AATCATGAAAAGAATGGGGTCTGTTATGAG-AATCGATGCTTGTCTTATTTAAGGGACGAACTTT
* * * * * *
295815 GATTCTATCAAAAAT-GGTTGAAAGAAAAG-CTTTTCTTGCAACACCAAAGCATCAATGTCATGT
65 GATTTTATCAAAAATAGG--GAAAGAAAAGAC-TTTCATGCAAAACAAAATCATCAATATCATGT
** * * * *
295878 ATCCTATTGATGG-GACTGTGTTTTTGGCT-CCT
127 ATCCTAAAGA-GGAGAATGTGCTTATAG-TGCCT
* * * *** * * *
295910 AATCTTGAAAAGAATGGAGAT-TATCCCGAGAATCGATGCTTGTCATATTTATGGGATGAACTTT
1 AATCATGAAAAGAATGG-GGTCTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGACGAACTTT
** *
295974 GATTTTATTTAAAATAAGGGCAAAGAAAAGA-TTTCCATGCAAAA-GAAATCATCAATATCACT-
65 GATTTTATCAAAAAT-AGGG-AAAGAAAAGACTTT-CATGCAAAACAAAATCATCAATATCA-TG
*
296036 TATCCTAAAGAGGAGAATGTGCTCATAGTGCCT
126 TATCCTAAAGAGGAGAATGTGCTTATAGTGCCT
* * * * * ** *
296069 AAT--TGCAAATTGAATGATGATC-ATTACT-AGAATCCG-TGCTTGT-TTCATTTGAGACAGGA
1 AATCATG-AAA-AGAATG-GGGTCTGTTA-TGAGAAT-CGATGCTTGTCTT-ATTTAAGGGACGA
* * * * * * ** * * **
296128 ACTTAGACTTTAT-AACAATTTATGG-AA-AAATGCCTTTC-TTAAGAAACCAAAGCATCAAGGT
60 ACTTTGATTTTATCAA-AA-ATAGGGAAAGAAAAGACTTTCATGCA-AAACAAAATCATCAATAT
* * * ** * * * *
296189 CGTGTAT-CTGAATGAGAAGAACATGTTTATGGCGCCG
122 CATGTATCCT-AAAGAGGAGAATGTGCTTATAGTGCCT
* * * * * *
296226 AATCCA-AAAAAGAATGGGGAT-TAG-TATGAGTATTC-AT-CTTTGCCTTATTTTAGAGACAAA
1 AAT-CATGAAAAGAATGGGG-TCT-GTTATGAG-AATCGATGC-TTGTCTTATTTAAGGGACGAA
** ** * * * * * **
296286 CTTTGATTCCATCAAAAACGGTGGAAAGAAAAG-CTTTTCATGCGACACCAAAGCGTCAAGGTCA
61 CTTTGATTTTATCAAAAATAG-GGAAAGAAAAGAC-TTTCATGCAAAACAAAATCATCAATATCA
** * * * *
296350 TGTATCCTACTGAACG-GAATGTG-TTTTAGGTTCCC
124 TGTATCCTAAAG-AGGAGAATGTGCTTATA-GTGCCT
* * * * * * * * *
296385 AATC-CGAAAAATAATGGAGACTGCTACGAGAATTGATG-TTCGTCTTATTTAAGGGATGAATTT
1 AATCATG-AAAAGAATGGGGTCTGTTATGAGAATCGATGCTT-GTCTTATTTAAGGGACGAACTT
* *** * * * * *
296448 TGATTATAGGGAAAATAGTGCAAATAAAAGA-TTTCCAAGCAAAATAAAATCATCAATATCATTT
64 TGATTTTATCAAAAATAG-GGAAAGAAAAGACTTT-CATGCAAAACAAAATCATCAATATCATGT
* * *
296512 ATCGTAATGTGGAGAATGTGCTTATAGTGCCT
127 ATCCTAAAGAGGAGAATGTGCTTATAGTGCCT
* * * * * * ** * * * * *
296544 AACCA-CAAAATGACTGAAGATC-ATTACT-AGAATCCTTGTTTGTC-TATTTGAGGCAAGAACA
1 AATCATGAAAA-GAATG-GGGTCTGTTA-TGAGAATCGATGCTTGTCTTATTTAAGGGACGAACT
* * * * * * * * **
296605 TAGACTTTA-CAAAATTTGGTGGGAA-AAATGCCTTT-ATTGCAAAACCAAAA-CATTAATATTG
63 TTGATTTTATCAAAA-ATAG-GGAAAGAAAAGACTTTCA-TGCAAAA-CAAAATCATCAATATCA
* * * * * ** *
296666 CGTATCCTAATGAGAAGACTATATTTATGGTGCCT
124 TGTATCCTAAAGAGGAGAATGTGCTTATAGTGCCT
* * * * * * * * *
296701 AACCCTAAAAAGAATAGGGAT-TAGTT-TGACTATTC-ATGTTTGTCTTATTTAAGAGACAAACT
1 AATCATGAAAAGAAT-GGGGTCT-GTTATGA-GAATCGATGCTTGTCTTATTTAAGGGACGAACT
** * ** * * * * * * *
296763 TTGATTCCATGAAAAACGGTGGAAACAAAAG-CTTTTCTTGTGACATC-AAAGCATCAATGTCAT
63 TTGATTTTATCAAAAATAG-GGAAAGAAAAGAC-TTTCATG-CAAAACAAAATCATCAATATCAT
** * * * * *
296826 GTATCCTATTGAAGG-GAATGTGTTTTTGGTACCC
125 GTATCCTAAAG-AGGAGAATGTGCTTATAGTGCCT
* * * *
296860 AATCTTGAAAAGAATGGAGAT-TGTTATAAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTT
1 AATCATGAAAAGAATGG-GGTCTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGACGAACTTT
*** ** * * * * *
296924 GATTTTAAGGAAAATAGGGCAAACCAAAGATTTTGATACAAAAGAAAATCATCAATATCATTTAT
65 GATTTTATCAAAAATAGGG-AAAGAAAAGACTTTCATGCAAAACAAAATCATCAATATCATGTAT
* * * *
296989 CCCAATGAGGAGAAAGTGCTTGTAGTGCCT
129 CCTAAAGAGGAGAATGTGCTTATAGTGCCT
** * * * * ** * * *
297019 AAT-AACAAAATGAATGAAGATCT-TTACT-AGAATCCATGTTTGTCCCATTTGAGGCATGAACT
1 AATCATGAAAA-GAATG-GGGTCTGTTA-TGAGAATCGATGCTTGTCTTATTTAAGGGACGAACT
* * * * * * *
297081 TAGACTTTA-CAAAAATTGGTAGGAA-AAAAGCCTTTCTTGCAAAACCAAAA-CATCAATATCGT
63 TTGATTTTATCAAAAATAGG--GAAAGAAAAGACTTTCATGCAAAA-CAAAATCATCAATATCAT
* *
297143 GTATCCTAATAAGAAGACAATGT--TTATAGTGCCT
125 GTATCCT-A-AAGAGGAGAATGTGCTTATAGTGCCT
* * * * * * *
297177 AATCCTGAAAAAAATGGGGAT-TAG-TATGAGCATTC-ATGTTTGCCTTATTTAAGAGACAAACT
1 AATCATGAAAAGAATGGGG-TCT-GTTATGAG-AATCGATGCTTGTCTTATTTAAGGGACGAACT
* * * * * * * * * **
297239 TTGATTATATCAAAAA-CGGTCGAAAGAAAAGCCTTTCTTGCGACACCAAAGCAACAATGCCATG
63 TTGATTTTATCAAAAATAGG--GAAAGAAAAGACTTTCATGCAAAACAAAATCATCAATATCATG
** * * * * *
297303 TATCCTATTGATGG-GAATGTGTTTTTGGTTCCC
126 TATCCTAAAGA-GGAGAATGTGCTTATAGTGCCT
* * * * ** *
297336 AATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATATTTGTCTTATTTAAGGGATGAACTTTG
1 AATCATGAAAAGAATGGGGTCTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGACGAACTTTG
** * * *
297401 ATTTTATGGAAAATGAGGGCAAGGAAAAGA-TTTCCATGCAAAAGAAAATCA-CTAATATCATTT
66 ATTTTATCAAAAAT-AGGG-AAAGAAAAGACTTT-CATGCAAAACAAAATCATC-AATATCATGT
* * *
297464 ATCCTCAAGAGAAGAATGTGCTTACAGTGCCT
127 ATCCTAAAGAGGAGAATGTGCTTATAGTGCCT
* * ** * ** * * * * * * *
297496 AATCA-CAAAATAACTGAAGACCATTACT-AGAATCCATGTTTATCTCATTTGAGGCACGAACGT
1 AATCATGAAAAGAA-TGGGGTCTGTTA-TGAGAATCGATGCTTGTCTTATTTAAGGGACGAACTT
* * * * * * * * ** **
297559 AGACTTTA-CAAAAATTGGTGGGAA-AAATGCCTTTCTTG-AGAAACCAAAGAATCAATATTGTG
64 TGATTTTATCAAAAA-TAG-GGAAAGAAAAGACTTTCATGCA-AAACAAAATCATCAATATCATG
* ** ** * *
297621 TATCCTAAATAAAAGAACATGTTTATGGTGCCT
126 TATCCTAAAGAGGAGAATGTGCTTATAGTGCCT
* * * * ** * * *
297654 AATCTTGAGAAGAATGGGGAT-TAGTT-TGACTATTC-ATATTTATCTTA-TTAAGAGACAAACT
1 AATCATGAAAAGAATGGGG-TCT-GTTATGA-GAATCGATGCTTGTCTTATTTAAGGGACGAACT
* ** * * * * * * * *
297715 TTAATTCCATCAAAAATGGTGGAAAGAAAAG-CTTTTCTTACGACACCAAAGCATCAATGTCATG
63 TTGATTTTATCAAAAATAG-GGAAAGAAAAGAC-TTTCATGCAAAACAAAATCATCAATATCATG
* ** * * * *
297779 TATCTTATTGAAGG-GAATGTGTTTTTGGTAACC-
126 TATCCTAAAG-AGGAGAATGTGCTTATAGT-GCCT
* * * **
297812 AATCTTCAAAAGAATGGAGAT-TGTTATGAGAATCGATGCTTGTCTTATTTAAGGGTTGAACTTT
1 AATCATGAAAAGAATGG-GGTCTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGACGAACTTT
*** * * * * * * *
297876 GATTTTAAGGAAAATAGGGCAAACAAAAGATTTTGATACAAAAGAAAATCTTCAATATCATTTAT
65 GATTTTATCAAAAATAGGG-AAAGAAAAGACTTTCATGCAAAACAAAATCATCAATATCATGTAT
*
297941 CCTAATGAGGAGAATGTGCTTATAGTGCCT
129 CCTAAAGAGGAGAATGTGCTTATAGTGCCT
297971 AATCAT-AAAATGAATG
1 AATCATGAAAA-GAATG
297987 AAGATCAATA
Statistics
Matches: 2025, Mismatches: 652, Indels: 381
0.66 0.21 0.12
Matches are distributed among these distances:
155 3 0.00
156 43 0.02
157 418 0.21
158 460 0.23
159 825 0.41
160 257 0.13
161 19 0.01
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (158 bp):
AATCATGAAAAGAATGGGGTCTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGACGAACTTTG
ATTTTATCAAAAATAGGGAAAGAAAAGACTTTCATGCAAAACAAAATCATCAATATCATGTATCC
TAAAGAGGAGAATGTGCTTATAGTGCCT
Found at i:296258 original size:475 final size:475
Alignment explanation
Indices: 294871--298548 Score: 4481
Period size: 475 Copynumber: 7.7 Consensus size: 475
294861 AGTTTGTCTT
* * * *
294871 ATCAAAAATGGTTGAAAGAAAAGCTTTTCTTGCGGCACCAAAGCATCAATGCCATGTATCCTATT
1 ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATT
* * * *
294936 GATGGGAATGTGTTTTTTGTTCCCAATCTTGAAAAGAATGG-GGTCTGTTACGAGGATCGATGCT
66 GAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGAT-TGTTACGAGAATCGATGCT
*
295000 TGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGACTTT-CATTC
130 TGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAAT-AGGGCAAAGAAAAGA-TTTCCATGC
* *
295064 AAAATAAAATCATCAATATCGTTTATCCTAATA-AGGAGAATGTGCTTATAGTGCCTAATCACAA
193 AAAAGAAAATCATCAATATCATTTATCCTAA-AGAGGAGAATGTGCTTATAGTGCCTAATCACAA
* * *
295128 AATGAATGGAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTTCA
257 AATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA
* ** * *
295193 AAAATTGGA-GGGAAAATGCCTTTCTTGCGAAACCAAAATATCAATATCGCGTATCCTAATGAGA
322 AAAATT-GATGGAAAAATGCCTTTCTTAAGAAACCAAAACATCAATATCGTGTATCCTAATGAGA
* * * * * *
295257 AGACTGTGTTTATGGTGCCTAATCTTGAAAAGAATAGGGTAATAGTATGACTATTCATGTTTGTA
386 AGACTATGTTTATGGTGCCTAATCCTAAAAAGAAT-GGGGATTAGTATGACTATTCATGTTTGTC
295322 TTATTTAAGAGACAAACTTTGATTCC
450 TTATTTAAGAGACAAACTTTGATTCC
* ** *
295348 ATCAAATACAATGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGTCATGTATCCTATT
1 ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATT
* * * * *
295413 GATGGGAATGTGTTTTTGGATCCCAATCATGAAAAGAATGG-GGTCTGTTATGAGAATCGATGCT
66 GAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGAT-TGTTACGAGAATCGATGCT
* * ** *
295477 AGTCTTATTTAAGGGATGAACTTTGATTTTATGAAAAATAGGG-AAA-AAAAGATTTTGATACAA
130 TGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAA
* *
295540 AAGAAAATCATCTATATCATTTATCCTAAAGAGGAGAATGTGCTTATAGTGCCTAATCATAAAAT
195 AAGAAAATCATCAATATCATTTATCCTAAAGAGGAGAATGTGCTTATAGTGCCTAATCACAAAAT
* * ** * * * *
295605 GAATAAAGATCACTACTAGAATCCATGTTTACCTCATTTGAGGCATGCACTTTGACTTTACTAAA
260 GAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAA
* * * * ** * *
295670 ATTGCTGGGAAAATGCCTTTCTTGTA-AAACCAAAATATCAATATTATTTATTCTAATGAGAAGA
325 ATTGATGGAAAAATGCCTTTCTT-AAGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGA
* * * * *
295734 CTATGTTTATGGTGCCTAATCCTTAAAAA-AATGGGCAAT-GCAATGAGTATTCAAGTTTGTCTT
389 CTATGTTTATGGTGCCTAATCC-TAAAAAGAATGGGGATTAG-TATGACTATTCATGTTTGTCTT
* * * * *
295797 AATTGAGGGAAAAACTTTGATTCT
452 ATTTAAGAGACAAACTTTGATTCC
* * *
295821 ATCAAAAATGGTTGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTATT
1 ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATT
* * * * * **
295886 GATGGGACTGTGTTTTTGGCTCCTAATCTTGAAAAGAATGGAGATTATCCCGAGAATCGATGCTT
66 GAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTT
* * **
295951 GTCATATTTATGGGATGAACTTTGATTTTATTTAAAATAAGGGCAAAGAAAAGATTTCCATGCAA
131 GTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAAT-AGGGCAAAGAAAAGATTTCCATGCAA
* * ** *
296016 AAG-AAATCATCAATATCACTTATCCTAAAGAGGAGAATGTGCTCATAGTGCCTAATTGCAAATT
195 AAGAAAATCATCAATATCATTTATCCTAAAGAGGAGAATGTGCTTATAGTGCCTAATCACAAAAT
* * * * * * * *
296080 GAATGATGATCATTACTAGAATCCGTGCTTGTTTCATTTGAGACAGGAACTTAGACTTTATAACA
260 GAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAA
* * **
296145 ATTTATGGAAAAATGCCTTTCTTAAGAAACCAAAGCATCAAGGTCGTGTAT-CTGAATGAGAAGA
325 ATTGATGGAAAAATGCCTTTCTTAAGAAACCAAAACATCAATATCGTGTATCCT-AATGAGAAG-
* * * * * *
296209 AC-ATGTTTATGGCGCCGAATCCAAAAAAGAATGGGGATTAGTATGAGTATTCATCTTTGCCTTA
388 ACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTA
*
296273 TTTTAGAGACAAACTTTGATTCC
453 TTTAAGAGACAAACTTTGATTCC
* * * *
296296 ATCAAAAACGGTGGAAAGAAAAGCTTTTCATGCGACACCAAAGCGTCAAGGTCATGTATCCTACT
1 ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATT
* * * * * * *
296361 GAACGGAATGTGTTTTAGGTTCCCAATC-CGAAAAATAATGGAGACTGCTACGAGAATTGATG-T
66 GAAGGGAATGTGTTTTTGGTTCCCAATCTTG-AAAAGAATGGAGATTGTTACGAGAATCGATGCT
* * * * * *
296424 TCGTCTTATTTAAGGGATGAATTTTGATTATAGGGAAAATAGTGCAAATAAAAGATTTCCAAGCA
130 T-GTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCA
* * * * *
296489 AAATAAAATCATCAATATCATTTATCGTAATGTGGAGAATGTGCTTATAGTGCCTAACCACAAAA
194 AAAGAAAATCATCAATATCATTTATCCTAAAGAGGAGAATGTGCTTATAGTGCCTAATCACAAAA
* * * *
296554 TGACTGAAGATCATTACTAGAATCCTTGTTTGTCT-ATTTGAGGCAAGAACATAGACTTTACAAA
259 TGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAA
* * * * * * *
296618 ATTTGGTGGGAAAAATGCCTTTATTGCA-AAACCAAAACATTAATATTGCGTATCCTAATGAGAA
324 AATTGAT-GGAAAAATGCCTTTCTT-AAGAAACCAAAACATCAATATCGTGTATCCTAATGAGAA
* * * *
296682 GACTATATTTATGGTGCCTAACCCTAAAAAGAATAGGGATTAGTTTGACTATTCATGTTTGTCTT
387 GACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTT
296747 ATTTAAGAGACAAACTTTGATTCC
452 ATTTAAGAGACAAACTTTGATTCC
* * * *
296771 ATGAAAAACGGTGGAAACAAAAGCTTTTCTTGTGACATCAAAGCATCAATGTCATGTATCCTATT
1 ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATT
* **
296836 GAAGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGATTGTTATAAGAATCGATGCTT
66 GAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTT
* ** ** *
296901 GTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAACCAAAGATTTTGATACAAA
131 GTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAA
* * * * *
296966 AGAAAATCATCAATATCATTTATCCCAATGAGGAGAAAGTGCTTGTAGTGCCTAATAACAAAATG
196 AGAAAATCATCAATATCATTTATCCTAAAGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATG
* * *
297031 AATGAAGATCTTTACTAGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAAA
261 AATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAA
* * * *
297096 TTGGTAGGAAAAAAGCCTTTCTTGCA-AAACCAAAACATCAATATCGTGTATCCTAATAAGAAGA
326 TTGAT-GGAAAAATGCCTTTCTT-AAGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGA
* * *
297160 CAATGTTTATAGTGCCTAATCCTGAAAAA-AATGGGGATTAGTATGAGC-ATTCATGTTTGCCTT
389 CTATGTTTATGGTGCCTAATCCT-AAAAAGAATGGGGATTAGTATGA-CTATTCATGTTTGTCTT
**
297223 ATTTAAGAGACAAACTTTGATTAT
452 ATTTAAGAGACAAACTTTGATTCC
* * * *
297247 ATCAAAAACGGTCGAAAGAAAAGCCTTTCTTGCGACACCAAAGCAACAATGCCATGTATCCTATT
1 ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATT
* * **
297312 GATGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATATTT
66 GAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTT
*
297377 GTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATGAGGGCAAGGAAAAGATTTCCATGCAA
131 GTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAAT-AGGGCAAAGAAAAGATTTCCATGCAA
* * *
297442 AAGAAAATCA-CTAATATCATTTATCCTCAAGAGAAGAATGTGCTTACAGTGCCTAATCACAAAA
195 AAGAAAATCATC-AATATCATTTATCCTAAAGAGGAGAATGTGCTTATAGTGCCTAATCACAAAA
* * *
297506 T-AACTGAAGACCATTACTAGAATCCATGTTTATCTCATTTGAGGCACGAACGTAGACTTTACAA
259 TGAA-TGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAA
* * * *
297570 AAATTGGTGGGAAAAATGCCTTTCTTGAGAAACCAAAGA-ATCAATATTGTGTATCCTAAAT-AA
323 AAATTGAT-GGAAAAATGCCTTTCTTAAGAAACCAAA-ACATCAATATCGTGTATCCT-AATGAG
* * * * * *
297633 AAGAAC-ATGTTTATGGTGCCTAATCTTGAGAAGAATGGGGATTAGTTTGACTATTCATATTTAT
385 AAG-ACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGT
*
297697 CTTA-TTAAGAGACAAACTTTAATTCC
449 CTTATTTAAGAGACAAACTTTGATTCC
* * *
297723 ATCAAAAATGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTATCTTATT
1 ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATT
** * *
297788 GAAGGGAATGTGTTTTTGGTAACCAATCTTCAAAAGAATGGAGATTGTTATGAGAATCGATGCTT
66 GAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTT
* * * ** *
297853 GTCTTATTTAAGGGTTGAACTTTGATTTTAAGGAAAATAGGGCAAACAAAAGATTTTGATACAAA
131 GTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAA
* * *
297918 AGAAAATCTTCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCATAAAATG
196 AGAAAATCATCAATATCATTTATCCTAAAGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATG
* *
297983 AATGAAGATCAATATCATTACTAGAATCCATGTTTGTTTCATTTGAGGCACGAACTTAGACTCTA
261 AATGAAG------ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTA
* * * * *
298048 CAAAAATTGGTTGGAAAAAAGCCTTTCTTACGAAACGAAAACATCAATATCGCGTATCCTAATGA
320 CAAAAATT-GATGGAAAAATGCCTTTCTTAAGAAACCAAAACATCAATATCGTGTATCCTAATGA
* * * * *
298113 AAAGGC-AGTGTTTATGGTACCTAATCC-AAAAATGAATGAGGATTAGTTTGACTATTCATGTTT
384 GAAGACTA-TGTTTATGGTGCCTAATCCTAAAAA-GAATGGGGATTAGTATGACTATTCATGTTT
*
298176 GTCTTATTTAAGAGACAAACTTTGATTCT
447 GTCTTATTTAAGAGACAAACTTTGATTCC
* * *
298205 ATCAAAAACGGGGGAAAGGAAAGCTTTTTTTGCGACACCAAAGCATCAATGTCATGTAT-CTATT
1 ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATT
* * * * *
298269 AAAGGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATAGAGATTGCTGCGAGAATCGATGCTT
66 GAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTT
*** * * * *
298334 GTCTTATTT-A-TCCT-AACTTTGATTTTACGAAAAAAAGGGCAAAGAAAAGTTTTCCATGCAAA
131 GTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGC-AA
* *
298396 AAAAAAATCATCAATATCATTTATCCTAATA-AGGAGAATGTGCTTATAGTGCCTGATCACAAAA
195 AAGAAAATCATCAATATCATTTATCCTAA-AGAGGAGAATGTGCTTATAGTGCCTAATCACAAAA
* * * ** * * *
298460 TGACTGAAGATCATTACTAGAGTCCTTGTTCATCT-ATTTGAGACAAGAACTTACACTTTACAAA
259 TGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAA
*
298524 AATTGGTGGGAAAAATGCCTTTCTT
324 AATTGAT-GGAAAAATGCCTTTCTT
298549 GTGATGAAAA
Statistics
Matches: 2747, Mismatches: 401, Indels: 111
0.84 0.12 0.03
Matches are distributed among these distances:
471 2 0.00
472 46 0.02
473 213 0.08
474 272 0.10
475 890 0.32
476 518 0.19
477 389 0.14
478 43 0.02
479 69 0.03
480 10 0.00
481 219 0.08
482 76 0.03
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.31
Consensus pattern (475 bp):
ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATT
GAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTT
GTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAA
AGAAAATCATCAATATCATTTATCCTAAAGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATG
AATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAA
TTGATGGAAAAATGCCTTTCTTAAGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACT
ATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTT
AAGAGACAAACTTTGATTCC
Found at i:296744 original size:950 final size:948
Alignment explanation
Indices: 294355--298549 Score: 5007
Period size: 950 Copynumber: 4.4 Consensus size: 948
294345 TGATTTTATC
* ****
294355 AAAAAGAATAGGGATTAGTATGACTATTCATGTTCATATTATTTAAGAGACAAACTTTGATTCCA
1 AAAAAGAATGGGGATTAGTATGACTATTCATGTTTGCCTTATTTAAGAGACAAACTTTGATTCCA
* * *
294420 TCAAAAACAGTGGAAGGAAAAGCTTTTCTTGCGACACCAAAGCTTCAATGTCATGTATCCTATT-
66 TCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTG
* * * * * * *
294484 AATGGGAATGTGTTTTTGGATCCCAATCATGAAAAGAATGGGGTCTGTTATGAGAATCGATGCTA
131 AA-GGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGCTACGAGAATCGATG-TT
* * * * * ** *
294549 GTCTTCTTCAAGGGATGAAATTTGATTTTATGGAAAATAAGGCAAA-AAAATGATTTTGATA-TA
194 GTCTTATTTAAGGGATGAACTTTGATTTTATGAAAAATAGGGCAAAGAAAA-GATTTCCA-AGCA
* * * * *
294612 AAAGAAAATCTTCAATATCATTTATCCTAAAGAGAAGAATGTGCTTATAGTGCCTAAGCATAAAA
257 AAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAA
* * * * *
294677 TGAATGAAGATCATTACTAGATTCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTCTACAAA
322 TGACTGAAGATCATTACTAGAATCCATGTTTATCTCATTTGAGGCAAGAACTTAGACTTTACAAA
* * * ** *
294742 AATTGGTCGAAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCATTTATCCTAATGAGAAG
387 AATTGGTGGGAAAAATGCCTTTCTTG-AAAACCAAAA-ATCAATATTGTGTATCCTAATGAGAAG
* * ** * *
294807 ACTATGTTTATGGTGCCCAATCCTGAAAAA-AAT--GACCA--AT-AC-A---ATG--AG---T-
450 ACTATGTTTATGGTGCCTAA-CCTTAAAAAGAATGGGATTAGTTTGACTATTCATGTTTGTCTTA
* * * *
294856 ATT------C-AAGTTTG--TCTTATCAAAAATGGTTGAAAGAAAAGCTTTTCTTGCGGCACCAA
514 ATTAAGAGACAAACTTTGATTC-CATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAA
* * * *
294912 AGCATCAATGCCATGTATCCTATTGATGGGAATGTGTTTTTTGTTCCCAATCTTGAAAAGAATGG
578 AGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAATGG
* * *
294977 -GGTCTGTTACGAGGATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAA
643 AGAT-TGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT-A
* * * * *
295041 GGGCAAAGAAAAGACTTTCATTCAAAATAAAATCATCAATATCGTTTATCCTAATA-AGGAGAAT
706 GGGCAAACAAAAGATTTTCATACAAAAGAAAATCATCAATATCATTTATCCTAA-AGAGGAGAAT
*
295105 GTGCTTATAGTGCCTAATCACAAAATGAATGGA-GATCATTACTAGAATCCATGTTTGTCTCATT
770 GTGCTTATAGTGCCTAATCACAAAATGAATAGATGATCATTACTAGAATCCATGTTTGTCTCATT
* * * * * ** *
295169 TGAGGCACGAACTTAGAATTTTCAAAAATTGGAGGGAAAATGCCTTTCTTGCGAAACCAAAATAT
835 TGAGGCACGAACTTAGACTTTACAAAAATTGTAGGAAAAAAGCCTTTCTTAAGAAACCAAAACAT
** **
295234 CAATATCGCGTATCCTAATGAGAAGACTGTGTTTATGGTGCCTAATCTT
900 CAATATCGCGTATCCTAATGAGAAGACAATGTTTATGGTGCCTAATCCA
* * * **
295283 GAAAAGAATAGGGTAATAGTATGACTATTCATGTTTGTATTATTTAAGAGACAAACTTTGATTCC
1 AAAAAGAAT-GGGGATTAGTATGACTATTCATGTTTGCCTTATTTAAGAGACAAACTTTGATTCC
* ** *
295348 ATCAAATACAATGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGTCATGTATCCTATT
65 ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATT
* * * * * * * *
295413 GATGGGAATGTGTTTTTGGATCCCAATCATGAAAAGAATGGGGTCTGTTATGAGAATCGATGCTA
130 GAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGCTACGAGAATCGATG-TT
**
295478 GTCTTATTTAAGGGATGAACTTTGATTTTATGAAAAATAGGG-AAA-AAAAGATTTTGATA-CAA
194 GTCTTATTTAAGGGATGAACTTTGATTTTATGAAAAATAGGGCAAAGAAAAGATTTCCA-AGCAA
* * *
295540 AAGAAAATCATCTATATCATTTATCCTAAAGAGGAGAATGTGCTTATAGTGCCTAATCATAAAAT
258 AAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAAT
* * * * * * * *
295605 GAATAAAGATCACTACTAGAATCCATGTTTACCTCATTTGAGGCATGCACTTTGACTTTACTAAA
323 GACTGAAGATCATTACTAGAATCCATGTTTATCTCATTTGAGGCAAGAACTTAGACTTTACAAAA
* * * *
295670 ATTGCTGGG-AAAATGCCTTTCTTGTAAAACCAAAATATCAATATTATTTATTCTAATGAGAAGA
388 ATTGGTGGGAAAAATGCCTTTCTTG-AAAACCAAAA-ATCAATATTGTGTATCCTAATGAGAAGA
* ** * *
295734 CTATGTTTATGGTGCCTAATCCTTAAAAA-AATGGGCAAT-GCAATGAGTATTCAAGTTTGTCTT
451 CTATGTTTATGGTGCCTAA-CCTTAAAAAGAATGGG-ATTAG-TTTGACTATTCATGTTTGTCTT
* * * * * *
295797 AATTGAGGGAAAAACTTTGATTCTATCAAAAATGGTTGAAAGAAAAGCTTTTCTTGCAACACCAA
513 AATTAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAA
* * *
295862 AGCATCAATGTCATGTATCCTATTGATGGGACTGTGTTTTTGGCT-CCTAATCTTGAAAAGAATG
578 AGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGG-TACCCAATCTTGAAAAGAATG
* ** * * ***
295926 GAGATTATCCCGAGAATCGATGCTTGTCATATTTATGGGATGAACTTTGATTTTATTTAAAATAA
642 GAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT-A
* * * *
295991 GGGCAAAGAAAAGATTTCCATGCAAAAG-AAATCATCAATATCACTTATCCTAAAGAGGAGAATG
706 GGGCAAACAAAAGATTTTCATACAAAAGAAAATCATCAATATCATTTATCCTAAAGAGGAGAATG
* ** * * * *
296055 TGCTCATAGTGCCTAATTGCAAATTGAAT-GATGATCATTACTAGAATCCGTGCTTGTTTCATTT
771 TGCTTATAGTGCCTAATCACAAAATGAATAGATGATCATTACTAGAATCCATGTTTGTCTCATTT
* * * * * *
296119 GAGACAGGAACTTAGACTTTATAACAATT-TATGGAAAAATGCCTTTCTTAAGAAACCAAAGCAT
836 GAGGCACGAACTTAGACTTTACAAAAATTGTA-GGAAAAAAGCCTTTCTTAAGAAACCAAAACAT
** * * *
296183 CAAGGTCGTGTAT-CTGAATGAGAAGA-ACATGTTTATGGCGCCGAATCCA
900 CAATATCGCGTATCCT-AATGAGAAGACA-ATGTTTATGGTGCCTAATCCA
* * *
296232 AAAAAGAATGGGGATTAGTATGAGTATTCATCTTTGCCTTATTTTAGAGACAAACTTTGATTCCA
1 AAAAAGAATGGGGATTAGTATGACTATTCATGTTTGCCTTATTTAAGAGACAAACTTTGATTCCA
* * * *
296297 TCAAAAACGGTGGAAAGAAAAGCTTTTCATGCGACACCAAAGCGTCAAGGTCATGTATCCTACTG
66 TCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTG
* * * * *
296362 AACGGAATGTGTTTTAGGTTCCCAATC-CGAAAAATAATGGAGACTGCTACGAGAATTGATGTTC
131 AAGGGAATGTGTTTTTGGTTCCCAATCTTG-AAAAGAATGGAGACTGCTACGAGAATCGATGTT-
* * * * * *
296426 GTCTTATTTAAGGGATGAATTTTGATTATAGGGAAAATAGTGCAAATAAAAGATTTCCAAGCAAA
194 GTCTTATTTAAGGGATGAACTTTGATTTTATGAAAAATAGGGCAAAGAAAAGATTTCCAAGCAAA
* * * *
296491 ATAAAATCATCAATATCATTTATCGTAATGTGGAGAATGTGCTTATAGTGCCTAACCACAAAATG
259 AGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATG
* * * *
296556 ACTGAAGATCATTACTAGAATCCTTGTTTGTCT-ATTTGAGGCAAGAACATAGACTTTACAAAAT
324 ACTGAAGATCATTACTAGAATCCATGTTTATCTCATTTGAGGCAAGAACTTAGACTTTACAAAAA
* * *
296620 TTGGTGGGAAAAATGCCTTTATTGCAAAACCAAAACATTAATATTGCGTATCCTAATGAGAAGAC
389 TTGGTGGGAAAAATGCCTTTCTTG-AAAACCAAAA-ATCAATATTGTGTATCCTAATGAGAAGAC
* * *
296685 TATATTTATGGTGCCTAACCCTAAAAAGAATAGGGATTAGTTTGACTATTCATGTTTGTCTTATT
452 TATGTTTATGGTGCCTAACCTTAAAAAGAAT-GGGATTAGTTTGACTATTCATGTTTGTCTTAAT
* * * * *
296750 TAAGAGACAAACTTTGATTCCATGAAAAACGGTGGAAACAAAAGCTTTTCTTGTGACATCAAAGC
516 TAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC
296815 ATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGA
581 ATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGA
**
296880 TTGTTATAAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCA
646 TTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCA
* * * * *
296945 AACCAAAGATTTTGATACAAAAGAAAATCATCAATATCATTTATCCCAATGAGGAGAAAGTGCTT
711 AACAAAAGATTTTCATACAAAAGAAAATCATCAATATCATTTATCCTAAAGAGGAGAATGTGCTT
* * * * *
297010 GTAGTGCCTAATAACAAAATGAAT-GAAGATCTTTACTAGAATCCATGTTTGTCCCATTTGAGGC
776 ATAGTGCCTAATCACAAAATGAATAGATGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGC
* *
297074 ATGAACTTAGACTTTACAAAAATTGGTAGGAAAAAAGCCTTTCTTGCA-AAACCAAAACATCAAT
841 ACGAACTTAGACTTTACAAAAATT-GTAGGAAAAAAGCCTTTCTT-AAGAAACCAAAACATCAAT
* * * *
297138 ATCGTGTATCCTAATAAGAAGACAATGTTTATAGTGCCTAATCCTG
904 ATCGCGTATCCTAATGAGAAGACAATGTTTATGGTGCCTAATCC-A
**
297184 AAAAA-AATGGGGATTAGTATGAGC-ATTCATGTTTGCCTTATTTAAGAGACAAACTTTGATTAT
1 AAAAAGAATGGGGATTAGTATGA-CTATTCATGTTTGCCTTATTTAAGAGACAAACTTTGATTCC
* * * *
297247 ATCAAAAACGGTCGAAAGAAAAGCCTTTCTTGCGACACCAAAGCAACAATGCCATGTATCCTATT
65 ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATT
* * *
297312 GATGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATATTT
130 GAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGCTACGAGAATCGAT-GTT
* * *
297377 GTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATGAGGGCAAGGAAAAGATTTCCATGCAA
194 GTCTTATTTAAGGGATGAACTTTGATTTTATGAAAAAT-AGGGCAAAGAAAAGATTTCCAAGCAA
* *
297442 AAGAAAATCA-CTAATATCATTTATCCTCAA-GAGAAGAATGTGCTTACAGTGCCTAATCACAAA
258 AAGAAAATCATC-AATATCATTTATCCT-AATGAGGAGAATGTGCTTATAGTGCCTAATCACAAA
* * * *
297505 ATAACTGAAGACCATTACTAGAATCCATGTTTATCTCATTTGAGGCACGAACGTAGACTTTACAA
321 ATGACTGAAGATCATTACTAGAATCCATGTTTATCTCATTTGAGGCAAGAACTTAGACTTTACAA
*
297570 AAATTGGTGGGAAAAATGCCTTTCTTGAGAAACCAAAGAATCAATATTGTGTATCCTAAAT-AAA
386 AAATTGGTGGGAAAAATGCCTTTCTTGA-AAACCAAA-AATCAATATTGTGTATCCT-AATGAGA
* * * * *
297634 AGAAC-ATGTTTATGGTGCCTAATCTTGAGAAGAATGGGGATTAGTTTGACTATTCATATTTATC
448 AG-ACTATGTTTATGGTGCCTAACCTTAAAAAGAAT-GGGATTAGTTTGACTATTCATGTTTGTC
* *
297698 TT-ATTAAGAGACAAACTTTAATTCCATCAAAAATGGTGGAAAGAAAAGCTTTTCTTACGACACC
511 TTAATTAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACC
* * *
297762 AAAGCATCAATGTCATGTATCTTATTGAAGGGAATGTGTTTTTGGTAACCAATCTTCAAAAGAAT
576 AAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAAT
* *
297827 GGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGTTGAACTTTGATTTTAAGGAAAATA
641 GGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATA
* * *
297892 GGGCAAACAAAAGATTTTGATACAAAAGAAAATCTTCAATATCATTTATCCTAATGAGGAGAATG
706 GGGCAAACAAAAGATTTTCATACAAAAGAAAATCATCAATATCATTTATCCTAAAGAGGAGAATG
* * *
297957 TGCTTATAGTGCCTAATCATAAAATGAATGAAGATCAATATCATTACTAGAATCCATGTTTGTTT
771 TGCTTATAGTGCCTAATCACAAAATGAAT--AGAT---GATCATTACTAGAATCCATGTTTGTCT
* * * *
298022 CATTTGAGGCACGAACTTAGACTCTACAAAAATTGGTTGGAAAAAAGCCTTTCTTACGAAACGAA
831 CATTTGAGGCACGAACTTAGACTTTACAAAAATT-GTAGGAAAAAAGCCTTTCTTAAGAAACCAA
* * * *
298087 AACATCAATATCGCGTATCCTAATGAAAAGGCAGTGTTTATGGTACCTAATCCA
895 AACATCAATATCGCGTATCCTAATGAGAAGACAATGTTTATGGTGCCTAATCCA
* * * * *
298141 AAAATGAATGAGGATTAGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
1 AAAAAGAATGGGGATTAGTATGACTATTCATGTTTGCCTTATTTAAGAGACAAACTTTGATTCCA
* * * *
298206 TCAAAAACGGGGGAAAGGAAAGCTTTTTTTGCGACACCAAAGCATCAATGTCATGTAT-CTATTA
66 TCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTG
* * * *
298270 AAGGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATAGAGATTGCTGCGAGAATCGATGCTTG
131 AAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGCTACGAGAATCGATG-TTG
*** * * * *
298335 TCTTATTT-A-TCCT-AACTTTGATTTTACGAAAAAAAGGGCAAAGAAAAGTTTTCCATGCAAAA
195 TCTTATTTAAGGGATGAACTTTGATTTTATGAAAAATAGGGCAAAGAAAAGATTTCCAAGC-AAA
* * *
298397 AAAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGCTTATAGTGCCTGATCACAAAATG
259 AGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATG
* * * * *
298462 ACTGAAGATCATTACTAGAGTCCTTGTTCATCT-ATTTGAGACAAGAACTTACACTTTACAAAAA
324 ACTGAAGATCATTACTAGAATCCATGTTTATCTCATTTGAGGCAAGAACTTAGACTTTACAAAAA
298526 TTGGTGGGAAAAATGCCTTTCTTG
389 TTGGTGGGAAAAATGCCTTTCTTG
298550 TGATGAAAAC
Statistics
Matches: 2830, Mismatches: 361, Indels: 127
0.85 0.11 0.04
Matches are distributed among these distances:
926 80 0.03
927 134 0.05
928 16 0.01
929 210 0.07
930 1 0.00
931 2 0.00
932 1 0.00
933 1 0.00
936 2 0.00
938 1 0.00
941 1 0.00
942 3 0.00
947 2 0.00
948 197 0.07
949 255 0.09
950 637 0.23
951 270 0.10
952 387 0.14
953 209 0.07
954 110 0.04
955 4 0.00
956 1 0.00
957 75 0.03
958 231 0.08
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.31
Consensus pattern (948 bp):
AAAAAGAATGGGGATTAGTATGACTATTCATGTTTGCCTTATTTAAGAGACAAACTTTGATTCCA
TCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTG
AAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGCTACGAGAATCGATGTTGT
CTTATTTAAGGGATGAACTTTGATTTTATGAAAAATAGGGCAAAGAAAAGATTTCCAAGCAAAAG
AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAC
TGAAGATCATTACTAGAATCCATGTTTATCTCATTTGAGGCAAGAACTTAGACTTTACAAAAATT
GGTGGGAAAAATGCCTTTCTTGAAAACCAAAAATCAATATTGTGTATCCTAATGAGAAGACTATG
TTTATGGTGCCTAACCTTAAAAAGAATGGGATTAGTTTGACTATTCATGTTTGTCTTAATTAAGA
GACAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAA
TGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGATTGTT
ACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAACAA
AAGATTTTCATACAAAAGAAAATCATCAATATCATTTATCCTAAAGAGGAGAATGTGCTTATAGT
GCCTAATCACAAAATGAATAGATGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAA
CTTAGACTTTACAAAAATTGTAGGAAAAAAGCCTTTCTTAAGAAACCAAAACATCAATATCGCGT
ATCCTAATGAGAAGACAATGTTTATGGTGCCTAATCCA
Found at i:301154 original size:42 final size:42
Alignment explanation
Indices: 301090--301208 Score: 175
Period size: 42 Copynumber: 2.8 Consensus size: 42
301080 TACCCCTCAA
* * *
301090 AGAGAAAGAAGAGAGAGAAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
301132 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* * *
301174 AAAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
301209 GAGAGAAGAA
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 69 1.00
ACGTcount: A:0.45, C:0.03, G:0.45, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:308488 original size:12 final size:11
Alignment explanation
Indices: 308466--308541 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
308456 AGAGAAAGAA
*
308466 GAGAGAGGAGG
1 GAGATAGGAGG
308477 GATGATAGGAGG
1 GA-GATAGGAGG
*
308489 AGAGACAGGA--
1 -GAGATAGGAGG
*
308499 GAGATAGTA--
1 GAGATAGGAGG
308508 GAGATAGGAGG
1 GAGATAGGAGG
308519 GATGATAGGAGG
1 GA-GATAGGAGG
*
308531 AGAGACAGGAG
1 -GAGATAGGAG
308542 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:308498 original size:24 final size:24
Alignment explanation
Indices: 308465--308550 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
308455 AAGAGAAAGA
*
308465 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
308489 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
308507 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
308531 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
308551 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:308517 original size:42 final size:42
Alignment explanation
Indices: 308456--308574 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
308446 TAGCCCTCAA
* *
308456 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
308498 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
308540 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
308575 GAGAGAAGAA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.43, C:0.03, G:0.46, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:314438 original size:418 final size:418
Alignment explanation
Indices: 313658--314481 Score: 1187
Period size: 418 Copynumber: 2.0 Consensus size: 418
313648 TTATTTAAAA
* *
313658 GATGAACTTTGATTTTAGGGAAAATAGGGCAAAGAAAAGATTTTGATACAAAAGAAAATTATAAA
1 GATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTGATACAAAAGAAAATCATAAA
* * * *
313723 TATCATTTATCCTAAAGAAAGGAGTGTGCTTATAGTGCCTATTCATAAAATTAATGAAGATCATT
66 TATCATTTACCCTAAAGAAAGGAGCGTGCTTATAGTGCCTAATAATAAAATTAATGAAGATCATT
313788 ACTAGAATCCATGTTTGTCTCGTTTGAGGCACGAACTTAGACTTTACAAAAATTGGTCAGAAAAG
131 ACTAGAATCCATGTTTGTCTCGTTTGAGGCACGAACTTAGACTTTACAAAAATTGGTCAGAAAAG
313853 GCCTTTCTTACGAAACCAAAACATCAATATTGCGTATCCTAATGAAAAAACAGTGTTTATGGTAC
196 GCCTTTCTTACGAAACCAAAACATCAATATTGCGTATCCTAATGAAAAAACAGTGTTTATGGTAC
* * *
313918 CTAATCCTGAAAAGAATGGGGATTAGTATAACTATTCATGTTTGTCTTATTTAGGAGACAAACTT
261 CTAATCCTGAAAAAAATGAGGATTAGTATAACTATTCATGTTTGTCTTATTTAAGAGACAAACTT
* *
313983 TGATTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGCCATGTA
326 TGATTCCATAAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGCCATGTA
* *
314048 TCATATTGAAGGGAATGTATTTTTAAGG
391 TCATATCGAAGAGAATGTATTTTTAAGG
* * *
314076 GATGAACTTTGA-TTTAAGGAAAATAGGGTAAAGAAAAGATTTTGATGCAAAAGAAAATCATCAA
1 GATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTGATACAAAAGAAAATCATAAA
*
314140 TATCATTTACCCT-AA-TAAGGAGAACGTGCTTATAGTGCCTAATAAT-AAATTGAATGAAGATC
66 TATCATTTACCCTAAAGAAAGGAG--CGTGCTTATAGTGCCTAATAATAAAATT-AATGAAGATC
* * * * *
314202 ATTACTAGAATCCGTGTTT-TTTCCTTTTGAGGCACGAACTTAGACTTTATAAAAATTGG-CGGG
128 ATTACTAGAATCCATGTTTGTCT-CGTTTGAGGCACGAACTTAGACTTTACAAAAATTGGTC-AG
* * * * * *
314265 AAAAATGCCTTTCTTGCGGAACCAAAACATCAATATTGTGTATCCTAATGAGAAGACTA-TGTTT
191 -AAAAGGCCTTTCTTACGAAACCAAAACATCAATATTGCGTATCCTAATGAAAAAAC-AGTGTTT
* * *
314329 ATGGTGCCTAATCCTGAAAAAAATGAGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGA
254 ATGGTACCTAATCCTGAAAAAAATGAGGATTAGTATAACTATTCATGTTTGTCTTATTTAAGAGA
* * * *
314394 CAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAA-CTTTTTCTTGTGGCACCAAAGCATCGAT
319 CAAACTTTGATTCCATAAAAAACGGTGGAAAGAAAAGC-TTTTCTTGCGACACCAAAGCATCAAT
* *
314458 GTCATGTATCCTATCGAAGAGAAT
383 GCCATGTATCATATCGAAGAGAAT
314482 TTGTTTTTGG
Statistics
Matches: 361, Mismatches: 37, Indels: 16
0.87 0.09 0.04
Matches are distributed among these distances:
415 6 0.02
416 10 0.03
417 142 0.39
418 202 0.56
419 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (418 bp):
GATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTGATACAAAAGAAAATCATAAA
TATCATTTACCCTAAAGAAAGGAGCGTGCTTATAGTGCCTAATAATAAAATTAATGAAGATCATT
ACTAGAATCCATGTTTGTCTCGTTTGAGGCACGAACTTAGACTTTACAAAAATTGGTCAGAAAAG
GCCTTTCTTACGAAACCAAAACATCAATATTGCGTATCCTAATGAAAAAACAGTGTTTATGGTAC
CTAATCCTGAAAAAAATGAGGATTAGTATAACTATTCATGTTTGTCTTATTTAAGAGACAAACTT
TGATTCCATAAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGCCATGTA
TCATATCGAAGAGAATGTATTTTTAAGG
Found at i:315511 original size:159 final size:158
Alignment explanation
Indices: 314274--316871 Score: 960
Period size: 159 Copynumber: 16.4 Consensus size: 158
314264 GAAAAATGCC
* * ** * * * * * *
314274 TTTCTTGCGGAACCAAAACATCAATATTGTGTATCCTAATG-AGAAGACTATGTTTATGGTGCCT
1 TTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTATTGAAG-GGAATGTGTTTTTGATGCCT
* * * * * * **
314338 AATCCTGAAAAAAAT-GAGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTT
65 AATCTTGAAAAGAATGGA-GATTATTATGAGAATCCATGTTTGTCTTATTTAAGGGATGAACTTT
* *
314402 GATTCCATCAAAAACGGTGGAAAGAAAA-CTT
129 GATT-TATCAAAAATGGTGGAAAGAAAAGC-T
* ** * * * * * * *
314433 TTTCTTGTGGCACCAAAGCATCGATGTCATGTATCCTATCGAAGAGAATTTGTTTTTGGTACCTA
1 TTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTATTGAAGGGAATGTGTTTTTGATGCCTA
* * * * *
314498 ATCTTGAAAAGAATGGAGGTTGTTGTGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGA
66 ATCTTGAAAAGAATGGAGATTATTATGAGAATCCATGTTTGTCTTATTTAAGGGATGAACTTTGA
* * * *
314563 TTT-TAAGGAAAATAAG-GCAAAGAAAAGAT
131 TTTATCA--AAAAT-GGTGGAAAGAAAAGCT
** * * ** * * * ** * *
314592 TTTGGTACAAAAAAAAATCATCAATATCATTTATCCTACTG-AGTATAATGTGCTTAT-AGTGCC
1 TTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTATTGAAG-GGAATGTGTTTTTGA-TGCC
* * * * * * *
314655 TAATCAT-AAAATGACTGAAGATCATTACT-AGAATCCATGTTTGTCTCATTTAAGGCACGAACT
64 TAATCTTGAAAA-GAATGGAGATTATTA-TGAGAATCCATGTTTGTCTTATTTAAGGGATGAACT
* * *
314718 TAGACTTTA-CAAAAATTGGTCGAAA-AAAAGCC
127 TTGA-TTTATCAAAAA-TGGTGGAAAGAAAAGCT
* * *** * * * * *
314750 TTTCTTACGAAACCAAAACATCAATATCGCATATCCTA---AAGAGAAGATATGATTGTGGTGCC
1 TTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTATTGAAG-GGA-ATGTGTTTTTGATGCC
* * * ** * **
314812 TAATCCTGAAAAGAATGG-GATTAGTATG-GCTATTTATGTTTGTCTTATTTAAGAGACAAACTT
64 TAATCTTGAAAAGAATGGAGATTATTATGAG-AATCCATGTTTGTCTTATTTAAGGGATGAACTT
* *
314875 TGATTCCATCAAAAACGGTGGAAAGAAAAGCT
128 TGATT-TATCAAAAATGGTGGAAAGAAAAGCT
** * * * * * ** * *
314907 TTTCTTGCGGTAGCAAAGCATCAATGTCTTGTATCCTATTGATGGGAAAGCATTTTT-AGTTCCC
1 TTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTATTGAAGGGAATGTGTTTTTGA-TGCCT
* * * * ** **
314971 AATCTTGAAAAGAATGGGGACTATTACGAGAATCGATACTTGTCTTATTTAACAGATGAACTTTG
65 AATCTTGAAAAGAATGGAGATTATTATGAGAATCCATGTTTGTCTTATTTAAGGGATGAACTTTG
* * * *
315036 ATTTTATGGAGCATAA-GG-GCAAAGAAAAGAT
130 A-TTTAT-CA--AAAATGGTGGAAAGAAAAGCT
* * ** * ** * *
315067 TTCCATGC-AAAAAAAATCATCAA-AGTCAAT-TATCCTAAAG-AGGAGAATGTGCTTAT-AGTG
1 TTTCTTGCGAAACCAAAGCATCAATA-TC-ATGTATCCTATTGAAGG-GAATGTGTTTTTGA-TG
* * * ** * ** * *
315127 CCTAATCAT-AAAATGAATGAAGATCATTACAAGAATCCTTGTTTGTCCCATTTGAGGCATGAAC
62 CCTAATCTTGAAAA-GAATGGAGATTATTATGAGAATCCATGTTTGTCTTATTTAAGGGATGAAC
* * * * *
315191 TTAAGCTTTA-CAAAAATTGGTGGGAA-AAATGCC
126 TT-TGATTTATCAAAAA-TGGTGGAAAGAAAAGCT
* * * * * * *
315224 TTTCTTGCAAAACCAAAACATCAATATGATGTATCCTAATG-AGAAGACTATGTTTATGGTG-TG
1 TTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTATTGAAG-GGAATGTGTTT-T--TGATG
* * * * ** * * **
315287 CCAAATCCTGAAAAGAATGAAGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACT
62 CCTAATCTTGAAAAGAATGGAGATTATTATGAGAATCCATGTTTGTCTTATTTAAGGGATGAACT
*
315352 TTGATTCTATCAAAAACGGTGGAAAGAAAAGCT
127 TTGATT-TATCAAAAATGGTGGAAAGAAAAGCT
* * * * *
315385 TTTCTTGCGACATCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGATACCCA
1 TTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTATTGAAGGGAATGTGTTTTTGATGCCTA
** ** * *
315450 ATCTTGAAAAGAATGGAGATTATTCCGAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTAA
66 ATCTTGAAAAGAATGGAGATTATTATGAGAATCCATGTTTGTCTTATTTAAGGGATGAACTTTGA
* * * * * *
315515 TTT-TTAGGAAAATAGAGCAAACAAAAGAT
131 TTTATCA--AAAATGGTGGAAAGAAAAGCT
** * * ** * * * * * * * *
315544 TTTGGTACAAAAGAAAATCACCAATATCCTTTATCCTAATG-AGGAGAAAGTGCTTAT-AGTGCC
1 TTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTATTGAAGG-GAATGTGTTTTTGA-TGCC
* *** * * * * * * *
315607 AAAT-AACAAAATGAATGAAGATCATTGCT-AGAATCCATGTTTATCTCATTTGAGGCATGAACT
64 TAATCTTGAAAA-GAATGGAGATTATT-ATGAGAATCCATGTTTGTCTTATTTAAGGGATGAACT
* ** * * *
315670 TAGACTTTAGAAAAAATGGTGGTAA-AAATGCC
127 TTGA-TTTATCAAAAATGGTGGAAAGAAAAGCT
* * * * * * * * * *
315702 TTTCCTGCGAAATCAAAACATCAATATCACGTATCCTAAT-AAGAAGACTATATTTTTGGTGCCT
1 TTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTATTGAAG-GGAATGTGTTTTTGATGCCT
* * *
315766 AATCTGGAAAAGAATGGGGATTAGTT-TGACG-ATTCATGTTTGTCTTATTTAAGAGGCA--AAC
65 AATCTTGAAAAGAATGGAGATTA-TTATGA-GAATCCATGTTTGTCTTATTTAAG-GG-ATGAAC
315827 TTTGATTCTATCAAAAATGGTGGAAAGAAAAGCT
126 TTTGATT-TATCAAAAATGGTGGAAAGAAAAGCT
* * * * * * * *
315861 TTTATTGCGACACTAAAGCACCAATTTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTACCCA
1 TTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTATTGAAGGGAATGTGTTTTTGATGCCTA
* * * *
315926 ATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTTA
66 ATCTTGAAAAGAATGGAGATTATTATGAGAATCCATGTTTGTCTTATTTAAGGGATGAACTTTGA
* * * *
315991 TTT-TAAGGAAAATTGG-GCAAACAAAAGAT
131 TTTATCA--AAAA-TGGTGGAAAGAAAAGCT
** * * ** * * * * * * * * *
316020 TTTGATACAAAAGAAAATCGTTAACATCATTTTTCCTAATT-AGGGGAATGTGCTTAT-AGTGCC
1 TTTCTTGCGAAACCAAAGCATCAATATCATGTATCCT-ATTGAAGGGAATGTGTTTTTGA-TGCC
*** * * * * ** * *
316083 TAAT-AACAAAATAAATGAAGATCATTACT-AGAAACCATGTTTGTCCCATTTGAGGCATGAACT
64 TAATCTTGAAAA-GAATGGAGATTATTA-TGAGAATCCATGTTTGTCTTATTTAAGGGATGAACT
* * *
316146 TAGACTTTA-CAAAAATTGGTGGAAA-AAATGCC
127 TTGA-TTTATCAAAAA-TGGTGGAAAGAAAAGCT
* * * * * * * *
316178 TTTCTTGAGAAACTAAAACATCAATATCATGTATCCTAATG-AGAAGACA-ATGTTTATGGTGCC
1 TTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTATTGAAG-GGA-ATGTGTTTTTGATGCC
* * * * * * * * **
316241 TAATCTCGAAAAAAAAGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTT
64 TAATCTTGAAAAGAATGGAGATTATTATGAGAATCCATGTTTGTCTTATTTAAGGGATGAACTTT
* *
316306 GATTATATCAAAAACGGTGGAAAGAAAAGCC
129 GATT-TATCAAAAATGGTGGAAAGAAAAGCT
* * * ** * * * * * *
316337 TTTCTTGTGACACCAAAGCAACAATGCCATGCATCCTATTGATGGGAAAGTGTTTTTGGTACCCA
1 TTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTATTGAAGGGAATGTGTTTTTGATGCCTA
* * * * *
316402 ATCTTGAAAAGAATGGAGATTGTTATGAGAGTCAATGCTTGTCTTATTTAAGGGTTGAACTTTGA
66 ATCTTGAAAAGAATGGAGATTATTATGAGAATCCATGTTTGTCTTATTTAAGGGATGAACTTTGA
* * * *
316467 TTT-TAAGGAAAATAGG-GCAAACAAAAGAT
131 TTTATCA--AAAAT-GGTGGAAAGAAAAGCT
** *** ** * * ** * *
316496 TTTGATATAAAAGAAAATG-ATAAATATCATTTATCCTAAAG-AGGAGAATGTGCTTAT-AGTGC
1 TTTCTTGCGAAACCAAA-GCATCAATATCATGTATCCTATTGAAGG-GAATGTGTTTTTGA-TGC
* * * * * * * *
316558 CTAATCAT-AAAATGAATGAAGATCATTATTAGAATCCATGTTTGTCTCATTTGAGGCACGAACT
63 CTAATCTTGAAAA-GAATGGAGATTATTATGAGAATCCATGTTTGTCTTATTTAAGGGATGAACT
* * *
316622 TAGACTTTA-CACAAATTGGTTGG-AA-AAAAGCC
127 TTGA-TTTATCA-AAAATGG-TGGAAAGAAAAGCT
* * * *** * *** ** *
316654 TTTCTTACGAAACCAAAACGTCAATATTGCGTATCCTAATGAAAATACA-GTGTTTAAGGTGCCT
1 TTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTATTGAAGGGA-ATGTGTTTTTGATGCCT
*** * * ** *** * **
316718 AATCAAAAAAAAAGAATGGGGATTAGTATGACTATTTGTGTTTGTCTTATTTAAGAGACAAACTT
65 AATC--TTGAAAAGAATGGAGATTATTATGAGAATCCATGTTTGTCTTATTTAAGGGATGAACTT
* * *
316783 TGATTCTATAAAAAATGGTAGAAAAAAAAGCT
128 TGATT-TATCAAAAATGGTGGAAAGAAAAGCT
** * * *
316815 TTTCTTGCGACCCCAAAGCATCAATGTCGTGTATCATATTGAAGGGAATGTGTTTTT
1 TTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTATTGAAGGGAATGTGTTTTT
316872 AATGGATGAA
Statistics
Matches: 1741, Mismatches: 575, Indels: 244
0.68 0.22 0.10
Matches are distributed among these distances:
155 7 0.00
156 45 0.03
157 95 0.05
158 387 0.22
159 920 0.53
160 170 0.10
161 112 0.06
162 5 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (158 bp):
TTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTATTGAAGGGAATGTGTTTTTGATGCCTA
ATCTTGAAAAGAATGGAGATTATTATGAGAATCCATGTTTGTCTTATTTAAGGGATGAACTTTGA
TTTATCAAAAATGGTGGAAAGAAAAGCT
Found at i:315965 original size:476 final size:474
Alignment explanation
Indices: 314069--318982 Score: 4171
Period size: 476 Copynumber: 10.1 Consensus size: 474
314059 GGAATGTATT
* * *
314069 TTTAAGGGATGAACTTTGA-TTTAAGGAAAATAGGGTAAAGAAAAGATTTTGATGCAAAAGAAAA
1 TTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAACAAAAGATTTTGATACAAAAGAAAA
* * * * *
314133 TCATCAATATCATTTACCCTAATAAGGAGAACGTGCTTATAGTGCCTAATAATAAATTGAATGAA
66 TCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATAACAAAATGAATGAA
* * * * * *
314198 GATCATTACTAGAATCCGTGTTT-TTTCCTTTTGAGGCACGAACTTAGACTTTATAAAAATTGGC
131 GATCATTACTAGAATCCATGTTTGTCT-CATTTGAGGCATGAACTTAGACTTTACAAAAATTGGT
* * * *
314262 GGGAAAAATGCCTTTCTTGCGGAACCAAAACATCAATATTGTGTATCCTAATGAGAAGACTATGT
195 GGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATAAGAAGACTATGT
* *
314327 TTATGGTGCCTAATCCTGAAAAAAATGAGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGA
260 TTATGGTGCCTAAT-CTGAAAAGAATGGGGATTAGTATGAG-ATTCATGTTTGTCTTATTTAAGA
* * * *
314392 GACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAA-CTTTTTCTTGTGGCACCAAAGCATCG
323 GACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGC-TTTTCTTGCGACACCAAAGCATCA
* * * * *
314456 ATGTCATGTATCCTATCGAAGAGAATTTGTTTTTGGTACCTAATCTTGAAAAGAATGGAGGTTGT
387 ATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGATTGT
*
314521 TGTGAGAATCGATGCTTGTCTTA
452 TATGAGAATCGATGCTTGTCTTA
* * * *
314544 TTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTGGTACAAAAAAAAA
1 TTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAACAAAAGATTTTGATACAAAAGAAAA
* * * * * *
314609 TCATCAATATCATTTATCCTACTGAGTATAATGTGCTTATAGTGCCTAATCATAAAATGACTGAA
66 TCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATAACAAAATGAATGAA
* * *
314674 GATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTAGACTTTACAAAAATTGGTC
131 GATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTG
* * * * *
314739 GAAAAAAAGCCTTTCTTACGAAACCAAAACATCAATATCGCATATCCTAA-AGAGAAGA-TATGA
196 GGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATA-AGAAGACTATGT
* *
314802 TTGTGGTGCCTAATCCTGAAAAGAAT-GGGATTAGTATG-GCTATTTATGTTTGTCTTATTTAAG
260 TTATGGTGCCTAAT-CTGAAAAGAATGGGGATTAGTATGAG--ATTCATGTTTGTCTTATTTAAG
* ** *
314865 AGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGGTAGCAAAGCATCA
322 AGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCA
* * * ** * * * * *
314930 ATGTCTTGTATCCTATTGATGGGAAAGCATTTTTAGTTCCCAATCTTGAAAAGAATGGGGACTAT
387 ATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGATTGT
* *
314995 TACGAGAATCGATACTTGTCTTA
452 TATGAGAATCGATGCTTGTCTTA
** * ** * ** *
315018 TTTAACAGATGAACTTTGATTTTATGGAGCATAAGGGCAAAGAAAAGATTTCCATGCAAAA-AAA
1 TTTAAGGGATGAACTTTGATTTTAAGGAAAAT-AGGGCAAACAAAAGATTTTGATACAAAAGAAA
* * * *
315082 ATCATCAA-AGTCAATTATCCTAAAGAGGAGAATGTGCTTATAGTGCCTAATCATAAAATGAATG
65 ATCATCAATA-TCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATAACAAAATGAATG
* * *
315146 AAGATCATTACAAGAATCCTTGTTTGTCCCATTTGAGGCATGAACTTA-AGCTTTACAAAAATTG
129 AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGA-CTTTACAAAAATTG
* * *
315210 GTGGGAAAAATGCCTTTCTTGCAAAACCAAAACATCAATAT-GATGTATCCTAATGAGAAGACTA
193 GTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCG-CGTATCCTAATAAGAAGACTA
* ** *
315274 TGTTTATGGTGTGCCAAATCCTGAAAAGAATGAAGATTAGTATGACTATTCATGTTTGTCTTATT
257 TGTTTAT-G-GTGCCTAAT-CTGAAAAGAATGGGGATTAGTATGA-GATTCATGTTTGTCTTATT
*
315339 TAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACATCAAAGC
318 TAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC
*
315404 ATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGATACCCAATCTTGAAAAGAATGGAGA
383 ATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGA
* ** *
315469 TTATTCCGAGAATTGATGCTTGTCTTA
448 TTGTTATGAGAATCGATGCTTGTCTTA
* * * *
315496 TTTAAGGGATGAACTTTAATTTTTAGGAAAATAGAGCAAACAAAAGATTTTGGTACAAAAGAAAA
1 TTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAACAAAAGATTTTGATACAAAAGAAAA
* * * *
315561 TCACCAATATCCTTTATCCTAATGAGGAGAAAGTGCTTATAGTGCCAAATAACAAAATGAATGAA
66 TCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATAACAAAATGAATGAA
* * * *
315626 GATCATTGCTAGAATCCATGTTTATCTCATTTGAGGCATGAACTTAGACTTTAGAAAAAATGGTG
131 GATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTG
* * * * *
315691 GTAAAAATGCCTTTCCTGCGAAATCAAAACATCAATATCACGTATCCTAATAAGAAGACTATATT
196 GGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATAAGAAGACTATGTT
* *
315756 TTTGGTGCCTAATCTGGAAAAGAATGGGGATTAGTTTGACGATTCATGTTTGTCTTATTTAAGAG
261 TATGGTGCCTAATCT-GAAAAGAATGGGGATTAGTATGA-GATTCATGTTTGTCTTATTTAAGAG
* * * * *
315821 GCAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTATTGCGACACTAAAGCACCAAT
324 ACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAAT
*
315886 TTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGATTGTTA
389 GTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGATTGTTA
315951 TGAGAATCGATGCTTGTCTTA
454 TGAGAATCGATGCTTGTCTTA
* *
315972 TTTAAGGGATGAACTTTTATTTTAAGGAAAATTGGGCAAACAAAAGATTTTGATACAAAAGAAAA
1 TTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAACAAAAGATTTTGATACAAAAGAAAA
* * * * * * *
316037 TCGTTAACATCATTTTTCCTAATTAGGGGAATGTGCTTATAGTGCCTAATAACAAAATAAATGAA
66 TCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATAACAAAATGAATGAA
* *
316102 GATCATTACTAGAAACCATGTTTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTG
131 GATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTG
* * * ** * *
316167 GAAAAAATGCCTTTCTTGAGAAACTAAAACATCAATATCATGTATCCTAATGAGAAGACAATGTT
196 GGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATAAGAAGACTATGTT
* *
316232 TATGGTGCCTAATCTCGAAAAAAAAGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAG
261 TATGGTGCCTAATCT-GAAAAGAATGGGGATTAGTATGAG-ATTCATGTTTGTCTTATTTAAGAG
* * * *
316297 ACAAACTTTGATTATATCAAAAACGGTGGAAAGAAAAGCCTTTCTTGTGACACCAAAGCAACAAT
324 ACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAAT
* * * *
316362 GCCATGCATCCTATTGATGGGAAAGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGATTGTTA
389 GTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGATTGTTA
* *
316427 TGAGAGTCAATGCTTGTCTTA
454 TGAGAATCGATGCTTGTCTTA
* *
316448 TTTAAGGGTTGAACTTTGATTTTAAGGAAAATAGGGCAAACAAAAGATTTTGATATAAAAGAAAA
1 TTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAACAAAAGATTTTGATACAAAAGAAAA
* * * * *
316513 TGATAAATATCATTTATCCTAAAGAGGAGAATGTGCTTATAGTGCCTAATCATAAAATGAATGAA
66 TCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATAACAAAATGAATGAA
* * * *
316578 GATCATTATTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACACAAATTGGTT
131 GATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTG
* * * * *
316643 GGAAAAAAGCCTTTCTTACGAAACCAAAACGTCAATATTGCGTATCCTAATGAA-AATAC-AGTG
196 GGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAAT-AAGAAGACTA-TG
* ** * **
316706 TTTAAGGTGCCTAATCAAAAAAAAAGAATGGGGATTAGTATGACTATTTGTGTTTGTCTTATTTA
259 TTTATGGTGCCTAATC---TGAAAAGAATGGGGATTAGTATGA-GATTCATGTTTGTCTTATTTA
* * * * *
316771 AGAGACAAACTTTGATTCTATAAAAAATGGTAGAAAAAAAAGCTTTTCTTGCGACCCCAAAGCAT
320 AGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAT
* * *** *
316836 CAATGTCGTGTATCATATTGAAGGGAATGTGTTTTTAATGGATGAACTTTGATTTTAGGGAAAAT
385 CAATGTCATGTATCCTATTGAAGGGAATGTG-TTTT--TGG-T--AC-CCAATCTT---G-AAA-
* * * *
316901 AGGGCAAAGAAAAGATT-TTGATACAAAAGAAAATC-AT-CATTATCATTTA
438 A--G-AATG--GAGATTGTT-AT------GAGAATCGATGC-TTGTC--TTA
* * * * ** ** *
316950 TCCTACTGAGGAGAACGCACTTAT-AGTGCCTAATAACAAATTGAATGAAGATCATTACTAGAAT
1 T--T--TAAGG-G-ATGAACTT-TGA-T---T-TTAAGGAA---AAT--AGGGCA-AAC-A-AA-
** * **** ** * ** * *
317014 CCATGTTTG-TCCCTTTTG--AGGCA-CGAACT-TAGACTTTA-CAAAAATTGGTGGGAAAAATG
45 AGAT-TTTGAT-ACAAAAGAAAATCATC-AA-TAT-CA-TTTATC-CTAA-T-G-AGG-AGAATG
* ** * * * * * * * *
317073 -CCTT-TCTTG-CGAA-ACCAAAACATCAAT-ATTGTGTATC-CTAATGAGAAGACTATGTTTAT
99 TGCTTATAGTGCCTAATAAC-AAA-ATGAATGA---AG-ATCATTACT-AGAA-TCCATG-TT-T
* *** * * *** ** * *** *
317132 GGTGCCTAATCTTGAAAAAAATGAGAATTAGTA-TGAGTATTCATGTTTGTCTTATTTAAGA-GA
154 -GT--CTCAT-TTG--AGGCATGA-ACTTAG-ACT--TTACAAAAATTGGTGGGA---AAAATG-
* * * * * * *** * * * *
317195 CAAACTTTGATT-C-AATCAAAAACGGTGGAAAGAAAACTTTTTCTTGTGGCACCA-AAGCATCG
205 C---CTTT-CTTGCGAAACCAAAAC-AT--CAATATCGC-GTATC--CT---A--ATAAG-A-AG
* * * *
317257 ATGTCGTGTATCCTATCGAAGGGAATGTGTTTTTGGTACCTAATCTTGAAAAGAATGGAGATT-G
253 A-CT-ATGT-T--TAT-G--GTG---------------CCTAATC-TGAAAAGAATGGGGATTAG
* * * *** * ** *
317321 TTATGAGAATCGATGCTTGTCTTATTTAAGGGGTGAACTTTGATTTTAAGGAAAATA-GG-GCAA
294 -TATGAGATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT-ATCAAAA-ACGGTGGAA
* ** * * ** * * * * ** *
317384 AGAAAAGATTTTGGTAC-AAAAAAAATCATCAATATCATTTATCCTAGTG-AGTATAATGTGCTT
355 AGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAG-GGAATGTGTTT
* * * * * * * ** * * *
317447 ATAGTTCCTAATCAT-AAAATGACTGAAGATCATTACT-AGAATCCATGTTTGTCTCA
419 TTGGTACCCAATCTTGAAAA-GAATGGAGATTGTTA-TGAGAATCGATGCTTGTCTTA
* * * * * * ** ** **
317503 TTTAAGGCACGAACTTAGACTTTACA--AAAATTGGTCGAAA-AAAAGCCTTTCTTACGAAACCA
1 TTTAAGGGATGAACTTTGATTTTA-AGGAAAATAGGGC-AAACAAAAGATTTTGATAC-AAAAGA
*** * * * * * * *
317565 AAA-CATCAATATCGCGTATCCTAAAGAGAAG-TTAGTGTTTTTGGTGCCTAAT-CCTGAAAA-G
63 AAATCATCAATATCATTTATCCTAATGAGGAGAAT-GTGCTTATAGTGCCTAATAAC--AAAATG
** * * * ** * * * * *
317626 AATGGGGATTAGTATTACTATTCATGTTTGTCTTATTTAAGAGACA--AACTTCGA-TTCCATCA
125 AATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT--GAGGCATGAACTTAGACTT-TA-CA
* * * * * * *
317688 AAAA-TGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC-CTGTATCCTATTGA
186 AAAATTGGTGGGAA-AAATGCCTTTCTTGCGAAACCAAAACATCAATATCGC-GTATCCTAAT-A
* * * * * * * * * * *
317751 TG-GGA-AAGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGGGACTATTACGAGAATCGATGCTT
248 AGAAGACTA-TGTTTATGGTGCCTAATC-TGAAAAGAATGGGGATTAGTATGAGATTC-ATGTTT
** * *
317814 GTCTTATTTAACG-GATGAACTTTGATTCTATCAAAAACCGTGGAAAGAAAAGCTTTTCTTGCGG
310 GTCTTATTTAA-GAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGA
* * *
317878 CACCAAAGCATCAATGTCATATATCCTATTGAAGGGAAAGTGTTTTTGGTACCCAATCTTAAAAA
374 CACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTACCCAATCTTGAAAA
* * *
317943 GAATGGAGATTATTCTGAGAATTGATGCTTGTCTTA
439 GAATGGAGATTGTTATGAGAATCGATGCTTGTCTTA
* * * *
317979 TTTAAGGAATGAACTTTAATTTTTAGAAAAATAGGGCAAACAAAAGATTTTGATACAAAAGAAAA
1 TTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAACAAAAGATTTTGATACAAAAGAAAA
* *
318044 TCATCAATATCCTTTATCCTAATGAGGAGAATGTGCTTATAGTGCCGAATAACAAAATGAATGAA
66 TCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATAACAAAATGAATGAA
* *
318109 GATCATTGCTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTAGAAAAATTGGTG
131 GATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTG
* * *
318174 GGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATATT
196 GGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATAAGAAGACTATGTT
* * *
318239 TATGGTGCCTAATCCAGAAAAGAATGGTGATTAGTTTGACGATTCATGTTTGTCTTATTTAAGAG
261 TATGGTGCCTAAT-CTGAAAAGAATGGGGATTAGTATGA-GATTCATGTTTGTCTTATTTAAGAG
* * * *
318304 ACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTTTTGCGACACCAAATCACCAAT
324 ACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAAT
*
318369 TTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGATTGTTA
389 GTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGATTGTTA
318434 TGAGAATCGATGCTTGTCTTA
454 TGAGAATCGATGCTTGTCTTA
* * *
318455 TTTAAGGCATGAACTTTGATTTTAAGAAAAATAGGGCAAACAAAAAATTTTGATACAAAAGAAAA
1 TTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAACAAAAGATTTTGATACAAAAGAAAA
* * * * * * * *
318520 TCGTTAACATCATTTATCCTAATTAGGGGATTGTGCTTATAGTGACTAATAACAAAATAAATGAA
66 TCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATAACAAAATGAATGAA
* * *
318585 GATCATTACTAGAATCCATGTTTGTCCCATTTGAGACATGAACTTACACTTTACAAAAATTGGTG
131 GATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTG
* * *
318650 GGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACAATGTT
196 GGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATAAGAAGACTATGTT
*
318715 TATGGTGCCTAATCTCGAAAAAAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAG
261 TATGGTGCCTAATCT-GAAAAGAATGGGGATTAGTATGAG-ATTCATGTTTGTCTTATTTAAGAG
* * * * *
318780 ACAAACTTTGATTATATCAACAACGGTGGAAAGAAAAGCCTTTCTTGTGACACCAAAGCAACAAT
324 ACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAAT
* * * * * *
318845 GCCCTGCATCCTATTGATGGGAATGTGTTTTTGGTACCCTATCTGGAAAAGAATGGAGATTGTTA
389 GTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGATTGTTA
* *
318910 TGGGAATGGATGCTTGTCTTA
454 TGAGAATCGATGCTTGTCTTA
** * * *
318931 TTTAAAAGATGAACTTTGATTTTATGGAAAATAGGGCAAATAAAAAATTTTG
1 TTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAACAAAAGATTTTG
318983 TGGTGTCAAC
Statistics
Matches: 3563, Mismatches: 658, Indels: 435
0.77 0.14 0.09
Matches are distributed among these distances:
473 5 0.00
474 361 0.10
475 172 0.05
476 1859 0.52
477 159 0.04
478 488 0.14
479 6 0.00
481 3 0.00
482 1 0.00
484 2 0.00
485 4 0.00
488 1 0.00
489 3 0.00
490 2 0.00
492 2 0.00
493 5 0.00
494 2 0.00
495 8 0.00
496 3 0.00
498 2 0.00
499 1 0.00
500 6 0.00
501 8 0.00
502 4 0.00
504 2 0.00
506 9 0.00
507 3 0.00
508 8 0.00
509 7 0.00
510 6 0.00
511 1 0.00
512 4 0.00
513 6 0.00
514 5 0.00
515 3 0.00
516 7 0.00
517 1 0.00
518 4 0.00
519 7 0.00
520 5 0.00
521 8 0.00
522 8 0.00
523 12 0.00
524 9 0.00
525 12 0.00
526 10 0.00
527 15 0.00
528 10 0.00
529 11 0.00
530 8 0.00
531 12 0.00
532 5 0.00
533 7 0.00
534 7 0.00
535 3 0.00
536 4 0.00
537 5 0.00
538 9 0.00
539 1 0.00
540 9 0.00
541 2 0.00
542 3 0.00
543 6 0.00
545 8 0.00
546 7 0.00
547 10 0.00
548 4 0.00
549 7 0.00
551 2 0.00
553 3 0.00
554 8 0.00
555 6 0.00
556 2 0.00
557 1 0.00
559 3 0.00
560 7 0.00
561 3 0.00
562 4 0.00
563 2 0.00
564 1 0.00
565 5 0.00
570 4 0.00
571 1 0.00
573 1 0.00
574 2 0.00
576 4 0.00
577 31 0.01
578 61 0.02
579 7 0.00
580 8 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (474 bp):
TTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAACAAAAGATTTTGATACAAAAGAAAA
TCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATAACAAAATGAATGAA
GATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTG
GGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATAAGAAGACTATGTT
TATGGTGCCTAATCTGAAAAGAATGGGGATTAGTATGAGATTCATGTTTGTCTTATTTAAGAGAC
AAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGT
CATGTATCCTATTGAAGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGATTGTTATG
AGAATCGATGCTTGTCTTA
Found at i:317288 original size:159 final size:156
Alignment explanation
Indices: 317075--318951 Score: 756
Period size: 159 Copynumber: 11.8 Consensus size: 156
317065 GAAAAATGCC
* * * ** * * * * *
317075 TTTCTTGCGAAACCAAAACATCAATATTGTGTATCCTAATG-AGAAGACTATGTTTATGGTGCCT
1 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT-ATGAAG-GGAATGTGTTTTTGGTACCT
* * *
317139 AATCTTGAAAAAAAT-GAGAATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTT
64 AATCTTGAAAAGAATGGAG-ATTAGTATGAG-ATTCATGCTTGTCTTATTTAAG-GACGAACTTT
317203 GATTCAATCAAAAACGGTGGAAAGAAAA-CTT
126 GATTCAATCAAAAACGGTGGAAAGAAAAGC-T
* * * *
317234 TTTCTTGTGGCACCAAAGCATCGATGTCGTGTATCCTATCGAAGGGAATGTGTTTTTGGTACCTA
1 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAT-GAAGGGAATGTGTTTTTGGTACCTA
* **
317299 ATCTTGAAAAGAATGGAGATT-GTTATGAGAATCGATGCTTGTCTTATTTAAGGGGTGAACTTTG
65 ATCTTGAAAAGAATGGAGATTAG-TATGAGATTC-ATGCTTGTCTTATTTAA-GGACGAACTTTG
* ** * *
317363 ATTTTAAGGAAAATA-GG-GCAAAGAAAAGAT
127 A-TTCAATCAAAA-ACGGTGGAAAGAAAAGCT
** * * ** * * * ** * * * *
317393 TTTGGTAC-AAAAAAAATCATCAATATCATTTATCCTAGTG-AGTATAATGTGCTTATAGTTCCT
1 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTA-TGAAG-GGAATGTGTTTTTGGTACCT
* * * * * * * *
317456 AATCAT-AAAATGACTGAAGATCATTACT-AGAATCCATGTTTGTCTCATTTAAGGCACGAACTT
64 AATCTTGAAAA-GAATGGAGATTAGTA-TGAG-ATTCATGCTTGTCTTATTTAAGG-ACGAACTT
* * * * *
317519 AGACTT-TA-CAAAAATTGGTCGAAA-AAAAGCC
125 TGA-TTCAATCAAAAA-CGGTGGAAAGAAAAGCT
* * * * ** * *
317550 TTTCTTACGAAACCAAAACATCAATATCGCGTATCCTA--AAGAGAAGTTAGTGTTTTTGGTGCC
1 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATGAAGGGAA--T-GTGTTTTTGGTACC
* * * * * * *
317613 TAATCCTGAAAAGAATGGGGATTAGTATTACTATTCATGTTTGTCTTATTTAAGAGACAAACTTC
63 TAATCTTGAAAAGAATGGAGATTAGTATGA-GATTCATGCTTGTCTTATTTAAG-GACGAACTTT
* *
317678 GATTCCATCAAAAATGGTGGAAAGAAAAGCT
126 GATTCAATCAAAAACGGTGGAAAGAAAAGCT
* * * * *
317709 TTTCTTGCGACACCAAAGCATCAATGTCCTGTATCCTATTGATGGGAAAGTGTTTTTGGTTCCCA
1 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTA-TGAAGGGAATGTGTTTTTGGTACCTA
* * * * * *
317774 ATCTTGAAAAGAATGGGGACTATTACGAGAATCGATGCTTGTCTTATTTAACGGATGAACTTTGA
65 ATCTTGAAAAGAATGGAGATTAGTATGAGATTC-ATGCTTGTCTTATTTAA-GGACGAACTTTGA
* *
317839 TTCTATCAAAAACCGTGGAAAGAAAAGCT
128 TTCAATCAAAAACGGTGGAAAGAAAAGCT
* * * *
317868 TTTCTTGCGGCACCAAAGCATCAATGTCATATATCCTATTGAAGGGAAAGTGTTTTTGGTACCCA
1 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTA-TGAAGGGAATGTGTTTTTGGTACCTA
* * * * * *
317933 ATCTTAAAAAGAATGGAGATTATTCTGAGAATTGATGCTTGTCTTATTTAAGGAATGAACTTTAA
65 ATCTTGAAAAGAATGGAGATTAGTATGAG-ATTCATGCTTGTCTTATTTAAGG-ACGAACTTTGA
** * * * * *
317998 TT-TTTAGAAAAATAGG-GCAAACAAAAGAT
128 TTCAAT-CAAAAA-CGGTGGAAAGAAAAGCT
** * * * ** * * * * * * * * *
318027 TTTGATACAAAAGAAAATCATCAATATCCTTTATCCTAATG-AGGAGAATGTGCTTATAGTGCCG
1 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT-ATGAAGG-GAATGTGTTTTTGGTACCT
*** * * * * * * *
318091 AAT-AACAAAATGAATGAAGATCA-T-TGCTAGAATCCATGTTTGTCTCATTTGAGGCATGAACT
64 AATCTTGAAAA-GAATGGAGATTAGTATG--AG-ATTCATGCTTGTCTTATTTAAGG-ACGAACT
* * ** * * *
318153 TAGACTTTAGA--AAAATTGGTGGGAA-AAATGCC
124 TTGA-TTCA-ATCAAAAACGGTGGAAAGAAAAGCT
* * * * * * * * * *
318185 TTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATG-AGAAGACTATATTTATGGTGCCT
1 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT-ATGAAG-GGAATGTGTTTTTGGTACCT
** * * * *
318249 AATCCAGAAAAGAATGGTGATTAGTTTGACGATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
64 AATCTTGAAAAGAATGGAGATTAGTATGA-GATTCATGCTTGTCTTATTTAAG-GACGAACTTTG
* *
318314 ATTCTATCAAAAATGGTGGAAAGAAAAGCT
127 ATTCAATCAAAAACGGTGGAAAGAAAAGCT
* * * * *
318344 TTTTTTGCGACACCAAATCACCAATTTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTACCCA
1 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTA-TGAAGGGAATGTGTTTTTGGTACCTA
* *
318409 ATCTTGAAAAGAATGGAGATT-GTTATGAGAATCGATGCTTGTCTTATTTAAGGCATGAACTTTG
65 ATCTTGAAAAGAATGGAGATTAG-TATGAGATTC-ATGCTTGTCTTATTTAAGG-ACGAACTTTG
* * * * * **
318473 ATTTTAA-GAAAAATAGG-GCAAACAAAAAAT
127 A-TTCAATCAAAAA-CGGTGGAAAGAAAAGCT
** * * * ** * * * ** * * * * * * *
318503 TTTGATACAAAAGAAAATCGTTAACATCATTTATCCTAATTAGGGGATTGTGCTTATAGTGA-CT
1 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT-ATGAAGGGAATGTGTTTTTGGT-ACCT
*** * * * * * * ** *
318567 AAT-AACAAAATAAATGAAGATCATTACT-AGAATCCATGTTTGTCCCATTTGA-GACATGAACT
64 AATCTTGAAAA-GAATGGAGATTAGTA-TGAG-ATTCATGCTTGTCTTATTTAAGGAC--GAACT
** * * * * *
318629 TACACTT-TA-CAAAAATTGGTGGGAA-AAATGCC
124 TTGA-TTCAATCAAAAA-CGGTGGAAAGAAAAGCT
* * * * * * * *
318661 TTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATG-AGAAGACA-ATGTTTATGGTGCC
1 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT-ATGAAG-GGA-ATGTGTTTTTGGTACC
* * * * *
318724 TAATCTCGAAAAAAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTT
63 TAATCTTGAAAAGAATGGAGATTAGTATGAG-ATTCATGCTTGTCTTATTTAAG-GACGAACTTT
* *
318789 GATT-ATATCAACAACGGTGGAAAGAAAAGCC
126 GATTCA-ATCAAAAACGGTGGAAAGAAAAGCT
* * * * * *
318820 TTTCTTGTGACACCAAAGCAACAATGCCCTGCATCCTATTGATGGGAATGTGTTTTTGGTACCCT
1 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTA-TGAAGGGAATGTGTTTTTGGTA-CCT
* * ** * *
318885 -ATCTGGAAAAGAATGGAGATT-GTTATGGGAATGGATGCTTGTCTTATTTAAAAGATGAACTTT
64 AATCTTGAAAAGAATGGAGATTAG-TATGAG-ATTCATGCTTGTCTTATTT-AAGGACGAACTTT
318948 GATT
126 GATT
318952 TTATGGAAAA
Statistics
Matches: 1283, Mismatches: 345, Indels: 180
0.71 0.19 0.10
Matches are distributed among these distances:
155 4 0.00
156 7 0.01
157 35 0.03
158 408 0.32
159 777 0.61
160 46 0.04
161 1 0.00
162 5 0.00
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (156 bp):
TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATGAAGGGAATGTGTTTTTGGTACCTAA
TCTTGAAAAGAATGGAGATTAGTATGAGATTCATGCTTGTCTTATTTAAGGACGAACTTTGATTC
AATCAAAAACGGTGGAAAGAAAAGCT
Found at i:318326 original size:635 final size:633
Alignment explanation
Indices: 317178--318475 Score: 1963
Period size: 635 Copynumber: 2.0 Consensus size: 633
317168 GTATTCATGT
** * *
317178 TTGTCTTATTTAAGAGACAAACTTTGATTCAATCAAAAACGGTGGAAAGAAAACTTTTTCTTGTG
1 TTGTCTTATTTAAG-GATGAACTTTGATTCAATCAAAAACCGTGGAAAGAAAACTTTTTCTTGCG
* * * * * *
317243 GCACCAAAGCATCGATGTCGTGTATCCTATCGAAGGGAATGTGTTTTTGGTACCTAATCTTGAAA
65 GCACCAAAGCATCAATGTCATATATCCTATCGAAGGGAAAGTGTTTTTGGTACCCAATCTTAAAA
* ** * *
317308 AGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGGTGAACTTTGATTTTAAGGA
130 AGAATGGAGATTATTATGAGAATCGATGCTTGTCTTATTTAAGGAATGAACTTTAATTTTAAGAA
* * * * *
317373 AAATAGGGCAAAGAAAAGATTTTGGTACAAAAAAAATCATCAATATCATTTATCCTAGTGAGTAT
195 AAATAGGGCAAACAAAAGATTTTGATACAAAAAAAATCATCAATATCATTTATCCTAATGAGGAG
* * * * *
317438 AATGTGCTTATAGTTCCTAATCATAAAATGACTGAAGATCATTACTAGAATCCATGTTTGTCTCA
260 AATGTGCTTATAGTGCCGAATAACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCA
317503 TTTAAGGCACGAACTTAGACTTTACAAAAATTGGTCGAAAAAAAGCCTTTCTTACGAAACCAAAA
325 TTTAAGGCACGAACTTAGACTTTACAAAAATTGGTCGAAAAAAAGCCTTTCTTACGAAACCAAAA
* * * *
317568 CATCAATATCGCGTATCCTAAAGAGAAGTTAGTGTTTTTGGTGCCTAATCCTGAAAAGAATGGGG
390 CATCAATATCGCGTATCCTAAAGAGAAGCTAGTATTTATGGTGCCTAATCCAGAAAAGAATGGGG
*
317633 ATTAGTATTACTATTCATGTTTGTCTTATTTAAGAGACAAACTTCGATTCCATCAAAAATGGTGG
455 ATTAGTATTACGATTCATGTTTGTCTTATTTAAGAGACAAACTTCGATTCCATCAAAAATGGTGG
* * *
317698 AAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCCTGTATCCTATTGATGGGAAAGTGTT
520 AAAGAAAAGCTTTTCTTGCGACACCAAAGCACCAATGTCATGTATCCTATTGAAGGGAAAGTGTT
* *
317763 TTTGGTTCCCAATCTTGAAAAGAATGGGGACTATTACGAGAATCGATGC
585 TTTGGTACCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCGATGC
*
317812 TTGTCTTATTTAACGGATGAACTTTGATTCTATCAAAAACCGTGGAAAGAAAAGC-TTTTCTTGC
1 TTGTCTTATTTAA-GGATGAACTTTGATTCAATCAAAAACCGTGGAAAGAAAA-CTTTTTCTTGC
*
317876 GGCACCAAAGCATCAATGTCATATATCCTATTGAAGGGAAAGTGTTTTTGGTACCCAATCTTAAA
64 GGCACCAAAGCATCAATGTCATATATCCTATCGAAGGGAAAGTGTTTTTGGTACCCAATCTTAAA
* * *
317941 AAGAATGGAGATTATTCTGAGAATTGATGCTTGTCTTATTTAAGGAATGAACTTTAATTTTTAGA
129 AAGAATGGAGATTATTATGAGAATCGATGCTTGTCTTATTTAAGGAATGAACTTTAATTTTAAGA
*
318006 AAAATAGGGCAAACAAAAGATTTTGATACAAAAGAAAATCATCAATATCCTTTATCCTAATGAGG
194 AAAATAGGGCAAACAAAAGATTTTGATACAAAA-AAAATCATCAATATCATTTATCCTAATGAGG
*
318071 AGAATGTGCTTATAGTGCCGAATAACAAAATGAATGAAGATCATTGCTAGAATCCATGTTTGTCT
258 AGAATGTGCTTATAGTGCCGAATAACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCT
* * * * * * *
318136 CATTTGAGGCATGAACTTAGACTTTAGAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAA
323 CATTTAAGGCACGAACTTAGACTTTACAAAAATTGGTCGAAAAAAAGCCTTTCTTACGAAACCAA
* *
318201 AACATCAATATCGTGTATCCTAATGAGAAGACTA-TATTTATGGTGCCTAATCCAGAAAAGAATG
388 AACATCAATATCGCGTATCCTAAAGAGAAG-CTAGTATTTATGGTGCCTAATCCAGAAAAGAATG
* * *
318265 GTGATTAGT-TTGACGATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATG
452 GGGATTAGTATT-ACGATTCATGTTTGTCTTATTTAAGAGACAAACTTCGATTCCATCAAAAATG
* * * *
318329 GTGGAAAGAAAAGCTTTTTTTGCGACACCAAATCACCAATTTCATGTATCCTATTGAAGGGAATG
516 GTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCACCAATGTCATGTATCCTATTGAAGGGAAAG
* * *
318394 TGTTTTTGGTACCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGC
581 TGTTTTTGGTACCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCGATGC
318447 TTGTCTTATTTAAGGCATGAACTTTGATT
1 TTGTCTTATTTAAGG-ATGAACTTTGATT
318476 TTAAGAAAAA
Statistics
Matches: 597, Mismatches: 61, Indels: 11
0.89 0.09 0.02
Matches are distributed among these distances:
634 205 0.34
635 390 0.65
636 2 0.00
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (633 bp):
TTGTCTTATTTAAGGATGAACTTTGATTCAATCAAAAACCGTGGAAAGAAAACTTTTTCTTGCGG
CACCAAAGCATCAATGTCATATATCCTATCGAAGGGAAAGTGTTTTTGGTACCCAATCTTAAAAA
GAATGGAGATTATTATGAGAATCGATGCTTGTCTTATTTAAGGAATGAACTTTAATTTTAAGAAA
AATAGGGCAAACAAAAGATTTTGATACAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGA
ATGTGCTTATAGTGCCGAATAACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCAT
TTAAGGCACGAACTTAGACTTTACAAAAATTGGTCGAAAAAAAGCCTTTCTTACGAAACCAAAAC
ATCAATATCGCGTATCCTAAAGAGAAGCTAGTATTTATGGTGCCTAATCCAGAAAAGAATGGGGA
TTAGTATTACGATTCATGTTTGTCTTATTTAAGAGACAAACTTCGATTCCATCAAAAATGGTGGA
AAGAAAAGCTTTTCTTGCGACACCAAAGCACCAATGTCATGTATCCTATTGAAGGGAAAGTGTTT
TTGGTACCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCGATGC
Found at i:318628 original size:635 final size:634
Alignment explanation
Indices: 317305--318629 Score: 1660
Period size: 635 Copynumber: 2.1 Consensus size: 634
317295 CCTAATCTTG
* ** * * ** ** *
317305 AAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGGTGAACTTTGATTTTAA
1 AAAAGAATGAAGATCATTCTGAGAATCCATGCTTGTCCCATTTAAGGAATGAACTTTAATTTTAA
* * * *
317370 GGAAAATAGGGCAAAGAAAAGATTTTGGTACAAAAAAAATCATCAATATCATTTATCCTAGTGAG
66 GAAAAATAGGGCAAACAAAAGATTTTGATACAAAAAAAATCATCAATATCATTTATCCTAATGAG
* * * * * * *
317435 TATAATGTGCTTATAGTTCCTAATCATAAAATGACTGAAGATCATTACTAGAATCCATGTTTGTC
131 GAGAATGTGCTTATAGTGCCGAATAACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTC
317500 TCATTTAAGGCACGAACTTAGACTTTACAAAAATTGGTCGAAAAAAAGCCTTTCTTACGAAACCA
196 TCATTTAAGGCACGAACTTAGACTTTACAAAAATTGGTCGAAAAAAAGCCTTTCTTACGAAACCA
* * * *
317565 AAACATCAATATCGCGTATCCTAAAGAGAAGTTAGTGTTTTTGGTGCCTAATCCTGAAAAGAATG
261 AAACATCAATATCGCGTATCCTAAAGAGAAGCTAGTATTTATGGTGCCTAATCCAGAAAAGAATG
*
317630 GGGATTAGTATTACTATTCATGTTTGTCTTATTTAAGAGACAAACTTCGATTCCATCAAAAATGG
326 GGGATTAGTATTACGATTCATGTTTGTCTTATTTAAGAGACAAACTTCGATTCCATCAAAAATGG
* * *
317695 TGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCCTGTATCCTATTGATGGGAAAGT
391 TGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCACCAATGTCATGTATCCTATTGAAGGGAAAGT
* *
317760 GTTTTTGGTTCCCAATCTTGAAAAGAATGGGGACTATTACGAGAATCGATGCTTGTCTTATTTAA
456 GTTTTTGGTACCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAA
* * * ** * * *** *
317825 CGGATGAACTTTGATTCTATCAAAAACCGTGGAAAGAAAAGCTTTTCTTGCGGCACCAAAGCATC
521 CGGATGAACTTTGATTCTAACAAAAACAGTGGAAACAAAAAATTTTCATACAAAACAAAAGCATC
** * * * ***
317890 AATGTCATATATCCTATTGAAGGGAAAGTGTTTTTGGTACCCAATCTTA
586 AACATCATATATCCTATTGAAGGGAAAGTGCTTATAGTACCCAATAACA
* * ** ** *
317939 AAAAGAATGGAGATTATTCTGAGAATTGATGCTTGTCTTATTTAAGGAATGAACTTTAATTTTTA
1 AAAAGAATGAAGATCATTCTGAGAATCCATGCTTGTCCCATTTAAGGAATGAACTTTAATTTTAA
*
318004 GAAAAATAGGGCAAACAAAAGATTTTGATACAAAAGAAAATCATCAATATCCTTTATCCTAATGA
66 GAAAAATAGGGCAAACAAAAGATTTTGATACAAAA-AAAATCATCAATATCATTTATCCTAATGA
*
318069 GGAGAATGTGCTTATAGTGCCGAATAACAAAATGAATGAAGATCATTGCTAGAATCCATGTTTGT
130 GGAGAATGTGCTTATAGTGCCGAATAACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGT
* * * * * * *
318134 CTCATTTGAGGCATGAACTTAGACTTTAGAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACC
195 CTCATTTAAGGCACGAACTTAGACTTTACAAAAATTGGTCGAAAAAAAGCCTTTCTTACGAAACC
* *
318199 AAAACATCAATATCGTGTATCCTAATGAGAAGACTA-TATTTATGGTGCCTAATCCAGAAAAGAA
260 AAAACATCAATATCGCGTATCCTAAAGAGAAG-CTAGTATTTATGGTGCCTAATCCAGAAAAGAA
* * *
318263 TGGTGATTAGT-TTGACGATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA
324 TGGGGATTAGTATT-ACGATTCATGTTTGTCTTATTTAAGAGACAAACTTCGATTCCATCAAAAA
* * *
318327 TGGTGGAAAGAAAAGCTTTTTTTGCGACACCAAATCACCAATTTCATGTATCCTATTGAAGGGAA
388 TGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCACCAATGTCATGTATCCTATTGAAGGGAA
* * * *
318392 TGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATT
453 AGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATT
* * * * *
318457 TAA-GGCATGAACTTTGATTTTAAGAAAAATAG-GGCAAACAAAAAATTTTGATACAAAAGAAAA
518 TAACGG-ATGAACTTTGATTCTAACAAAAACAGTGG-AAACAAAAAATTTTCATACAAAACAAAA
* * * * * ** *
318520 TCGTTAACATCATTTATCCTAATT-AGGGGATTGTGCTTATAGTGA-CTAATAACA
581 GCATCAACATCATATATCCT-ATTGAAGGGAAAGTGCTTATAGT-ACCCAATAACA
* *
318574 AAATA-AATGAAGATCATTACT-AGAATCCATGTTTGTCCCATTTGA-GACATGAACTT
1 AAA-AGAATGAAGATCATT-CTGAGAATCCATGCTTGTCCCATTTAAGGA-ATGAACTT
318630 ACACTTTACA
Statistics
Matches: 592, Mismatches: 89, Indels: 19
0.85 0.13 0.03
Matches are distributed among these distances:
634 98 0.17
635 485 0.82
636 9 0.02
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (634 bp):
AAAAGAATGAAGATCATTCTGAGAATCCATGCTTGTCCCATTTAAGGAATGAACTTTAATTTTAA
GAAAAATAGGGCAAACAAAAGATTTTGATACAAAAAAAATCATCAATATCATTTATCCTAATGAG
GAGAATGTGCTTATAGTGCCGAATAACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTC
TCATTTAAGGCACGAACTTAGACTTTACAAAAATTGGTCGAAAAAAAGCCTTTCTTACGAAACCA
AAACATCAATATCGCGTATCCTAAAGAGAAGCTAGTATTTATGGTGCCTAATCCAGAAAAGAATG
GGGATTAGTATTACGATTCATGTTTGTCTTATTTAAGAGACAAACTTCGATTCCATCAAAAATGG
TGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCACCAATGTCATGTATCCTATTGAAGGGAAAGT
GTTTTTGGTACCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAA
CGGATGAACTTTGATTCTAACAAAAACAGTGGAAACAAAAAATTTTCATACAAAACAAAAGCATC
AACATCATATATCCTATTGAAGGGAAAGTGCTTATAGTACCCAATAACA
Found at i:318823 original size:635 final size:632
Alignment explanation
Indices: 317305--318836 Score: 1479
Period size: 635 Copynumber: 2.4 Consensus size: 632
317295 CCTAATCTTG
* ** * * ** ** *
317305 AAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGGTGAACTTTGAT-TTTA
1 AAAAGAATGAAGATCATTCTGAGAATCCATGCTTGTCCCATTTAAGGAATGAACTTTAATCTTTA
* * ** * * *
317369 -AGGAAAATAGGGCAAAGAAAAGATTTTGGTACAAAA-AAAATCATCAATATCATTTATCCTAGT
66 CA--AAAATAGGGCAAACAAAAGACTTTCATACAAAACAAAATCATCAATATCCTGTATCCTAAT
* * * * * * * * *
317432 GAGTATAATGTGCTTATAGTTCCTAATCATAAAATGACTGAAGATCATTACTAGAATCCATGTTT
129 GAGGACAATGT-CTTATAGTGCCGAATAACAAAATAAATGAAGATCATTGC-AGAATCCATGTTT
* * * * *
317497 GTCTCATTTAAGGCACGAACTTAGACTTTACAAAAATTGGTCGAAAAAAAGCCTTTCTTACGAAA
192 GTCTCATTTGAGACA-GAACTTAGACTTTACAAAAATCGGTGGAAAAAAAGCCTTTCTTGCGAAA
* * * *
317562 CCAAAACATCAATATCGCGTATCCTAAAGAGAAGTTAGTGTTTTTGGTGCCTAATCCTGAAAAGA
256 CCAAAACATCAATATCGCGTATCCTAAAGAGAAGCTAGTATTTATGGTGCCTAATCCAGAAAAGA
*
317627 ATGGGGATTAGTATTACTATTCATGTTTGTCTTATTTAAGAGACAAACTTCGATTCCATCAAAAA
321 ATGGGGATTAGTATTACGATTCATGTTTGTCTTATTTAAGAGACAAACTTCGATTCCATCAAAAA
* * *
317692 TGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCCTGTATCCTATTGATGGGAA
386 TGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCACCAATGTCATGTATCCTATTGAAGGGAA
* *
317757 AGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGGGACTATTACGAGAATCGATGCTTGTCTTATT
451 AGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATT
* * * ** * * *** *
317822 TAACGGATGAACTTTGATTCTATCAAAAACCGTGGAAAGAAAAGCTTTTCTTGCGGCACCAAAGC
516 TAACGGATGAACTTTGATTCTAACAAAAACAGTGGAAACAAAAAATTTTCATACAAAACAAAAGC
** * * * ***
317887 ATCAATGTCATATATCCTATTGAAGGGAAAGTGTTTTTGGTACCCAATCTTA
581 ATCAACATCATATATCCTATTGAAGGGAAAGTGCTTATAGTACCCAATAACA
* * ** ** *
317939 AAAAGAATGGAGATTATTCTGAGAATTGATGCTTGTCTTATTTAAGGAATGAACTTTAATTTTTA
1 AAAAGAATGAAGATCATTCTGAGAATCCATGCTTGTCCCATTTAAGGAATGAACTTTAATCTTTA
* * * * *
318004 GAAAAATAGGGCAAACAAAAGATTTTGATACAAAAGAAAATCATCAATATCCTTTATCCTAATGA
66 CAAAAATAGGGCAAACAAAAGACTTTCATACAAAACAAAATCATCAATATCCTGTATCCTAATGA
* *
318069 GGAGAATGTGCTTATAGTGCCGAATAACAAAATGAATGAAGATCATTGCTAGAATCCATGTTTGT
131 GGACAATGT-CTTATAGTGCCGAATAACAAAATAAATGAAGATCATTGC-AGAATCCATGTTTGT
* * * * *
318134 CTCATTTGAGGCATGAACTTAGACTTTAGAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACC
194 CTCATTTGAGACA-GAACTTAGACTTTACAAAAATCGGTGGAAAAAAAGCCTTTCTTGCGAAACC
* *
318199 AAAACATCAATATCGTGTATCCTAATGAGAAGACTA-TATTTATGGTGCCTAATCCAGAAAAGAA
258 AAAACATCAATATCGCGTATCCTAAAGAGAAG-CTAGTATTTATGGTGCCTAATCCAGAAAAGAA
* * *
318263 TGGTGATTAGT-TTGACGATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA
322 TGGGGATTAGTATT-ACGATTCATGTTTGTCTTATTTAAGAGACAAACTTCGATTCCATCAAAAA
* * *
318327 TGGTGGAAAGAAAAGCTTTTTTTGCGACACCAAATCACCAATTTCATGTATCCTATTGAAGGGAA
386 TGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCACCAATGTCATGTATCCTATTGAAGGGAA
* * * *
318392 TGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATT
451 AGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATT
* * * * *
318457 TAA-GGCATGAACTTTGATTTTAAGAAAAATAG-GGCAAACAAAAAATTTTGATACAAAAGAAAA
516 TAACGG-ATGAACTTTGATTCTAACAAAAACAGTGG-AAACAAAAAATTTTCATACAAAACAAAA
* * * * * ** *
318520 TCGTTAACATCATTTATCCTAATT-AGGGGATTGTGCTTATAGTGA-CTAATAACA
579 GCATCAACATCATATATCCT-ATTGAAGGGAAAGTGCTTATAGT-ACCCAATAACA
* *
318574 AAATA-AATGAAGATCATTACT-AGAATCCATGTTTGTCCCATTTGA-GACATGAAC-TTACA-C
1 AAA-AGAATGAAGATCATT-CTGAGAATCCATGCTTGTCCCATTTAAGGA-ATGAACTTTA-ATC
* ** * * * * * *
318634 TTTACAAAAATTGGTGGGAA-AAATGCCTTTCTTGCGAAACCAAAA-CATCAATATCGTGTATCC
62 TTTACAAAAATAGG-GCAAACAAAAGACTTTCATAC-AAAACAAAATCATCAATATCCTGTATCC
* * ** ** * * *
318697 TAATGAGAAGACAATGT-TTATGGTGCCTAATCTCGAAAA-AAATGGGGATTAGTATG-AGTATT
125 TAATGAG--GACAATGTCTTATAGTGCCGAATAAC-AAAATAAATGAAGATCA-T-TGCAGAATC
* * *
318759 CATGTTTGTCTTATTTAAGAGACA-AACTTTGA-TTATATCAACAA-CGGTGGAAAGAAAAGCCT
185 CATGTTTGTCTCATTT--GAGACAGAACTTAGACTT-TA-CAAAAATCGGTGGAAA-AAAAGCCT
* *
318821 TTCTTGTGACACCAAA
245 TTCTTGCGAAACCAAA
318837 GCAACAATGC
Statistics
Matches: 750, Mismatches: 123, Indels: 49
0.81 0.13 0.05
Matches are distributed among these distances:
633 2 0.00
634 196 0.26
635 528 0.70
636 24 0.03
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.31
Consensus pattern (632 bp):
AAAAGAATGAAGATCATTCTGAGAATCCATGCTTGTCCCATTTAAGGAATGAACTTTAATCTTTA
CAAAAATAGGGCAAACAAAAGACTTTCATACAAAACAAAATCATCAATATCCTGTATCCTAATGA
GGACAATGTCTTATAGTGCCGAATAACAAAATAAATGAAGATCATTGCAGAATCCATGTTTGTCT
CATTTGAGACAGAACTTAGACTTTACAAAAATCGGTGGAAAAAAAGCCTTTCTTGCGAAACCAAA
ACATCAATATCGCGTATCCTAAAGAGAAGCTAGTATTTATGGTGCCTAATCCAGAAAAGAATGGG
GATTAGTATTACGATTCATGTTTGTCTTATTTAAGAGACAAACTTCGATTCCATCAAAAATGGTG
GAAAGAAAAGCTTTTCTTGCGACACCAAAGCACCAATGTCATGTATCCTATTGAAGGGAAAGTGT
TTTTGGTACCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAACG
GATGAACTTTGATTCTAACAAAAACAGTGGAAACAAAAAATTTTCATACAAAACAAAAGCATCAA
CATCATATATCCTATTGAAGGGAAAGTGCTTATAGTACCCAATAACA
Found at i:321324 original size:20 final size:20
Alignment explanation
Indices: 321284--321390 Score: 88
Period size: 20 Copynumber: 5.7 Consensus size: 20
321274 TTTACCCAGA
*
321284 TGTATCGATACATT-TTGCAT
1 TGTATCGATACATTGCT-CAT
*
321304 TGCATCGATACATTGCTCAT
1 TGTATCGATACATTGCTCAT
*
321324 TGTATAGAT--A-----CAT
1 TGTATCGATACATTGCTCAT
321337 TGTATCGATACATTGCTCAT
1 TGTATCGATACATTGCTCAT
* *
321357 TGTATCGATACATT-TTACAA
1 TGTATCGATACATTGCT-CAT
321377 TGTATCGATACATT
1 TGTATCGATACATT
321391 TAGGCATTTT
Statistics
Matches: 71, Mismatches: 7, Indels: 18
0.74 0.07 0.19
Matches are distributed among these distances:
13 11 0.15
15 1 0.01
18 1 0.01
19 1 0.01
20 56 0.79
21 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (20 bp):
TGTATCGATACATTGCTCAT
Found at i:321344 original size:33 final size:33
Alignment explanation
Indices: 321301--321370 Score: 122
Period size: 33 Copynumber: 2.1 Consensus size: 33
321291 ATACATTTTG
321301 CATTGCATCGATACATTGCTCATTGTATAGATA
1 CATTGCATCGATACATTGCTCATTGTATAGATA
* *
321334 CATTGTATCGATACATTGCTCATTGTATCGATA
1 CATTGCATCGATACATTGCTCATTGTATAGATA
321367 CATT
1 CATT
321371 TTACAATGTA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.39
Consensus pattern (33 bp):
CATTGCATCGATACATTGCTCATTGTATAGATA
Found at i:321370 original size:13 final size:13
Alignment explanation
Indices: 321321--321351 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
321311 ATACATTGCT
321321 CATTGTATAGATA
1 CATTGTATAGATA
*
321334 CATTGTATCGATA
1 CATTGTATAGATA
321347 CATTG
1 CATTG
321352 CTCATTGTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.32, C:0.13, G:0.16, T:0.39
Consensus pattern (13 bp):
CATTGTATAGATA
Found at i:323758 original size:52 final size:51
Alignment explanation
Indices: 323696--323840 Score: 157
Period size: 51 Copynumber: 2.8 Consensus size: 51
323686 TCCCGGTTTC
* * ** * *
323696 ATTTCCAAAACATCAATTTTTCTTAATCAGGGGTTACTCCAACTCCGATTTT
1 ATTTCCAAAACACCAATTTTCCAAAATCA-GGGATACTCCAACTCCAATTTT
* *
323748 ATTTCTAAAACACCTATTTTCCAAAATCAGGGATACTCCAACTCCAATTTT
1 ATTTCCAAAACACCAATTTTCCAAAATCAGGGATACTCCAACTCCAATTTT
* * * *
323799 ATTTCCAAAACACTGACTTTT-CACAATCGGGGATACTCCAAC
1 ATTTCCAAAACAC-CAATTTTCCAAAATCAGGGATACTCCAAC
323841 CCCGTTATTT
Statistics
Matches: 78, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
51 51 0.65
52 27 0.35
ACGTcount: A:0.32, C:0.26, G:0.09, T:0.33
Consensus pattern (51 bp):
ATTTCCAAAACACCAATTTTCCAAAATCAGGGATACTCCAACTCCAATTTT
Found at i:323879 original size:79 final size:78
Alignment explanation
Indices: 323777--324075 Score: 368
Period size: 79 Copynumber: 3.8 Consensus size: 78
323767 TCCAAAATCA
* ** * * * *
323777 GGGATACTCCAACTCCAATTTTATTTCCAAAACACTGACTTTTCACAATCGGGGATACTCCAACC
1 GGGATACTCCAACCCCGGTTTTATTTCTAAAACA-TAAATTTTCACAATCAGGGATACTCCAACC
323842 CCGTTATTTTCGAG
65 CCGTTATTTTCGAG
* * * *
323856 GGGACACTCCAACCCCGGTTTTATTTCTAAAATATTAATTTCTCATAATCAGGGATACTCCAACC
1 GGGATACTCCAACCCCGGTTTTATTTCTAAAACATAAATTT-TCACAATCAGGGATACTCCAACC
323921 CCGTTATTTTCGAG
65 CCGTTATTTTCGAG
* * *
323935 GGGATA--ACAACCCCGGTTTTATTTCTAAAACATCAATTTTTCATAATCAGGGATACTCCAACC
1 GGGATACTCCAACCCCGGTTTTATTTCTAAAACAT-AAATTTTCACAATCAGGGATACTCCAACC
* *
323998 TCGTTATTTTTGAG
65 CCGTTATTTTCGAG
** * *
324012 GGGATACTCCAACCCCGGTTTTATTTCTAAAACACCAATTCTCCACAATCGGGGATACTCCAAC
1 GGGATACTCCAACCCCGGTTTTATTTCTAAAACATAAATT-TTCACAATCAGGGATACTCCAAC
324076 TCCGATTTTA
Statistics
Matches: 191, Mismatches: 24, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
77 66 0.35
78 12 0.06
79 113 0.59
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.31
Consensus pattern (78 bp):
GGGATACTCCAACCCCGGTTTTATTTCTAAAACATAAATTTTCACAATCAGGGATACTCCAACCC
CGTTATTTTCGAG
Found at i:323979 original size:77 final size:78
Alignment explanation
Indices: 323816--324075 Score: 369
Period size: 79 Copynumber: 3.3 Consensus size: 78
323806 AAACACTGAC
* *
323816 TTTTCACAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGACACTCCAACCCCGGTTTTATT
1 TTTTCACAATCAGGGATACTCCAACCCCGTTATTTTCGAGGGGATAC-CCAACCCCGGTTTTATT
* *
323881 TCTAAAATATTAAT
65 TCTAAAACATCAAT
* * *
323895 TTCTCATAATCAGGGATACTCCAACCCCGTTATTTTCGAGGGGATA-ACAACCCCGGTTTTATTT
1 TTTTCACAATCAGGGATACTCCAACCCCGTTATTTTCGAGGGGATACCCAACCCCGGTTTTATTT
323959 CTAAAACATCAAT
66 CTAAAACATCAAT
* * *
323972 TTTTCATAATCAGGGATACTCCAACCTCGTTATTTTTGAGGGGATACTCCAACCCCGGTTTTATT
1 TTTTCACAATCAGGGATACTCCAACCCCGTTATTTTCGAGGGGATAC-CCAACCCCGGTTTTATT
*
324037 TCTAAAACACCAAT
65 TCTAAAACATCAAT
* * *
324051 TCTCCACAATCGGGGATACTCCAAC
1 TTTTCACAATCAGGGATACTCCAAC
324076 TCCGATTTTA
Statistics
Matches: 163, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
77 71 0.44
79 92 0.56
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.32
Consensus pattern (78 bp):
TTTTCACAATCAGGGATACTCCAACCCCGTTATTTTCGAGGGGATACCCAACCCCGGTTTTATTT
CTAAAACATCAAT
Found at i:324087 original size:51 final size:51
Alignment explanation
Indices: 324011--324130 Score: 186
Period size: 51 Copynumber: 2.4 Consensus size: 51
324001 TTATTTTTGA
*
324011 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACACCAATTCTCCACAATC
1 GGGGATACTCCAACCCCGATTTTATTTCTAAAACACCAATTCTCCACAATC
* * * * *
324062 GGGGATACTCCAACTCCGATTTTATTTTTAAAACACTAATTTTTCACAATC
1 GGGGATACTCCAACCCCGATTTTATTTCTAAAACACCAATTCTCCACAATC
324113 GGGGATACTCCAACCCCG
1 GGGGATACTCCAACCCCG
324131 TTATTTCATC
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 62 1.00
ACGTcount: A:0.29, C:0.28, G:0.13, T:0.29
Consensus pattern (51 bp):
GGGGATACTCCAACCCCGATTTTATTTCTAAAACACCAATTCTCCACAATC
Found at i:324146 original size:28 final size:27
Alignment explanation
Indices: 324110--324186 Score: 102
Period size: 28 Copynumber: 2.8 Consensus size: 27
324100 ATTTTTCACA
*
324110 ATCGGGGATACTCCAACCCCGTTATTT
1 ATCGAGGATACTCCAACCCCGTTATTT
*
324137 CATCGAGGATACTCCAACCCCATTATTT
1 -ATCGAGGATACTCCAACCCCGTTATTT
324165 -TCGAGGAGATACTCCAACCCCG
1 ATCGA-G-GATACTCCAACCCCG
324187 GCTTTATTTC
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
26 4 0.09
27 1 0.02
28 39 0.89
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.25
Consensus pattern (27 bp):
ATCGAGGATACTCCAACCCCGTTATTT
Found at i:324253 original size:51 final size:51
Alignment explanation
Indices: 324172--324286 Score: 167
Period size: 51 Copynumber: 2.3 Consensus size: 51
324162 TTTTCGAGGA
*
324172 GATACTCCAACCCCGGCTTTATTTCCAAAATATTGATTTCTCACAATCAGG
1 GATACTCCAACCCCGGCCTTATTTCCAAAATATTGATTTCTCACAATCAGG
* * * * *
324223 GATACTTCAACCTCGGCCTTATTTCTAAAATATTGATTTCTCATAATCGGG
1 GATACTCCAACCCCGGCCTTATTTCCAAAATATTGATTTCTCACAATCAGG
*
324274 GACACTCCAACCC
1 GATACTCCAACCC
324287 TGTTATTTTT
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
51 55 1.00
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (51 bp):
GATACTCCAACCCCGGCCTTATTTCCAAAATATTGATTTCTCACAATCAGG
Found at i:324305 original size:158 final size:158
Alignment explanation
Indices: 323983--324314 Score: 384
Period size: 158 Copynumber: 2.1 Consensus size: 158
323973 TTTCATAATC
* * * * * *
323983 AGGGATACTCCAACCTCGTTATTTTTGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAACACC
1 AGGGATACTCCAACCCCATTATTTTCGAGGAGATACTCCAACCCCGGCTTTATTTCCAAAACACC
* ** * *
324048 AATTCTCCACAATCGGGGATACTCCAACTCCGATTTTATTTTTAAAACACTAATTTTTCACAATC
66 AATTCTCCACAATCAGGGATACTCCAACTCCGACCTTATTTCTAAAACACTAATTTCTCACAATC
*
324113 GGGGATACTCCAACCCCGTTATTTCATCG
131 GGGGACACTCCAACCCCGTTATTT-ATCG
* **
324142 A-GGATACTCCAACCCCATTATTTTCGAGGAGATACTCCAACCCCGGCTTTATTTCCAAAATATT
1 AGGGATACTCCAACCCCATTATTTTCGAGGAGATACTCCAACCCCGGCTTTATTTCCAAAACACC
* * * * * * *
324206 GATT-TCTCACAATCAGGGATACTTCAAC-CTCGGCCTTATTTCTAAAATATTGATTTCTCATAA
66 AATTCTC-CACAATCAGGGATACTCCAACTC-CGACCTTATTTCTAAAACACTAATTTCTCACAA
* *
324269 TCGGGGACACTCCAACCCTGTTATTT-TTG
129 TCGGGGACACTCCAACCCCGTTATTTATCG
324298 AGGGGATACTCCAACCC
1 A-GGGATACTCCAACCC
324315 TGTTATTATC
Statistics
Matches: 145, Mismatches: 24, Indels: 9
0.81 0.13 0.05
Matches are distributed among these distances:
156 3 0.02
157 3 0.02
158 138 0.95
159 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (158 bp):
AGGGATACTCCAACCCCATTATTTTCGAGGAGATACTCCAACCCCGGCTTTATTTCCAAAACACC
AATTCTCCACAATCAGGGATACTCCAACTCCGACCTTATTTCTAAAACACTAATTTCTCACAATC
GGGGACACTCCAACCCCGTTATTTATCG
Found at i:336691 original size:1 final size:1
Alignment explanation
Indices: 336685--336784 Score: 83
Period size: 1 Copynumber: 100.0 Consensus size: 1
336675 CTTCTCTTCT
* * * * * * * *
336685 AAAAAAAAAACAAAAACAAAAACAAAAAAAACAAAAACAAAAACAAAAACAAAAAAAAAAGAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * *
336750 ACAAAAAACAAAAAAAAAACAAAACAAAGAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
336785 GAGAGAAAAG
Statistics
Matches: 73, Mismatches: 26, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
1 73 1.00
ACGTcount: A:0.87, C:0.11, G:0.02, T:0.00
Consensus pattern (1 bp):
A
Found at i:336699 original size:6 final size:6
Alignment explanation
Indices: 336685--336777 Score: 119
Period size: 6 Copynumber: 16.5 Consensus size: 6
336675 CTTCTCTTCT
336685 AAAAA- AAAAAC AAAAAC AAAAAC --AAA- AAAAAC AAAAAC AAAAAC
1 AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC
*
336729 AAAAAC AAAAA- AAAAAG AAAAAC AAAAAAC AAAAA- AAAAAC -AAAAC
1 AAAAAC AAAAAC AAAAAC AAAAAC -AAAAAC AAAAAC AAAAAC AAAAAC
336775 AAA
1 AAA
336778 GAAAAAAGAG
Statistics
Matches: 79, Mismatches: 1, Indels: 15
0.83 0.01 0.16
Matches are distributed among these distances:
4 3 0.04
5 23 0.29
6 47 0.59
7 6 0.08
ACGTcount: A:0.87, C:0.12, G:0.01, T:0.00
Consensus pattern (6 bp):
AAAAAC
Found at i:336705 original size:12 final size:12
Alignment explanation
Indices: 336685--336777 Score: 119
Period size: 11 Copynumber: 8.2 Consensus size: 12
336675 CTTCTCTTCT
336685 AAAAA-AAAAAC
1 AAAAACAAAAAC
336696 AAAAACAAAAAC
1 AAAAACAAAAAC
336708 --AAA-AAAAAC
1 AAAAACAAAAAC
336717 AAAAACAAAAAC
1 AAAAACAAAAAC
336729 AAAAACAAAAA-
1 AAAAACAAAAAC
*
336740 AAAAAGAAAAAC
1 AAAAACAAAAAC
336752 AAAAAACAAAAA-
1 -AAAAACAAAAAC
336764 AAAAAC-AAAAC
1 AAAAACAAAAAC
336775 AAA
1 AAA
336778 GAAAAAAGAG
Statistics
Matches: 73, Mismatches: 2, Indels: 14
0.82 0.02 0.16
Matches are distributed among these distances:
9 6 0.08
10 7 0.10
11 27 0.37
12 23 0.32
13 10 0.14
ACGTcount: A:0.87, C:0.12, G:0.01, T:0.00
Consensus pattern (12 bp):
AAAAACAAAAAC
Found at i:336715 original size:27 final size:27
Alignment explanation
Indices: 336685--336777 Score: 129
Period size: 27 Copynumber: 3.5 Consensus size: 27
336675 CTTCTCTTCT
336685 AAAAAAAAAACAAAAACAAAAACAAAA
1 AAAAAAAAAACAAAAACAAAAACAAAA
*
336712 AAAACAAAAACAAAAACAAAAAC-AAA
1 AAAAAAAAAACAAAAACAAAAACAAAA
* *
336738 AAAAAAAGAA-AAACA-AAAAACAAAA
1 AAAAAAAAAACAAAAACAAAAACAAAA
336763 AAAAAACAAAACAAA
1 AAAAAA-AAAACAAA
336778 GAAAAAAGAG
Statistics
Matches: 58, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
24 6 0.10
25 13 0.22
26 14 0.24
27 25 0.43
ACGTcount: A:0.87, C:0.12, G:0.01, T:0.00
Consensus pattern (27 bp):
AAAAAAAAAACAAAAACAAAAACAAAA
Found at i:338097 original size:61 final size:61
Alignment explanation
Indices: 337861--338125 Score: 263
Period size: 55 Copynumber: 4.5 Consensus size: 61
337851 TTTCACCCTT
*
337861 TAGTCCTCAAAGAGCAGGACGCCTTT-C----AAAGCCCACACAAGTTGGTGGCACCTTTC
1 TAGTCCTCAAAGAGCAGGACGCCTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCC
* * ** *
337917 -AGTCCTCAAAGAGCA--A-G--ATGCCTTTTAAAGCCCACATGAGTTGGTGGCACCCTCC
1 TAGTCCTCAAAGAGCAGGACGCCTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCC
* * * *
337972 -AGTCCTCAAAGCGTAGGACGCCTTTTTTCTTTTAAAGCCCACACAAGTTGATGGCACCTT--
1 TAGTCCTCAAAGAGCAGGACGCC--TTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCC
* * *
338032 TAGTCCTCGAAGAGCAGGACGCCTTCTCCTTTTAAAGCCTATACAAGTTGGTGGCA-CTTCC
1 TAGTCCTCAAAGAGCAGGACGCCTT-TCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCC
*
338093 TAGTCCTCAAACAGCAGGACGCTCTTTCCTTTT
1 TAGTCCTCAAAGAGCAGGACGC-CTTTCCTTTT
338126 GCCTTTTTGT
Statistics
Matches: 168, Mismatches: 24, Indels: 29
0.76 0.11 0.13
Matches are distributed among these distances:
50 1 0.01
51 1 0.01
52 1 0.01
53 1 0.01
55 53 0.32
57 1 0.01
58 1 0.01
59 5 0.03
60 26 0.15
61 46 0.27
62 32 0.19
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (61 bp):
TAGTCCTCAAAGAGCAGGACGCCTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCC
Found at i:338112 original size:122 final size:118
Alignment explanation
Indices: 337883--338119 Score: 275
Period size: 122 Copynumber: 2.0 Consensus size: 118
337873 AGCAGGACGC
*
337883 CTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAAGATGCCTTTTAAAGC
1 CTTTCAAAGCCCACACAAGTTGATGGCACCTTTCAGTCCTCAAAGAGCAAGATGCCTTTTAAAGC
** *
337948 CCACATGAGTTGGTGGCACCCTCCAGTCCTCAAAGCGTAGGACGC-CTTTTTT
66 CCACACAAGTTGGTGGCACCCTCCAGTCCTCAAAGCGCAGGACGCTCTTTTTT
* * * *
338000 CTTTTAAAGCCCACACAAGTTGATGGCACCTTT-AGTCCTCGAAGAGCAGGACGCCTTCTCCTTT
1 CTTTCAAAGCCCACACAAGTTGATGGCACCTTTCAGTCCTCAAAGAGCA--A-G--AT-GCCTTT
* * *
338064 TAAAGCCTATACAAGTTGGTGGCA-CTTCCTAGTCCTCAAA-CAGCAGGACGCTCTTT
60 TAAAGCCCACACAAGTTGGTGGCACCCTCC-AGTCCTCAAAGC-GCAGGACGCTCTTT
338120 CCTTTTGCCT
Statistics
Matches: 100, Mismatches: 11, Indels: 12
0.81 0.09 0.10
Matches are distributed among these distances:
116 14 0.14
117 31 0.31
118 1 0.01
119 1 0.01
121 6 0.06
122 43 0.43
123 4 0.04
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.27
Consensus pattern (118 bp):
CTTTCAAAGCCCACACAAGTTGATGGCACCTTTCAGTCCTCAAAGAGCAAGATGCCTTTTAAAGC
CCACACAAGTTGGTGGCACCCTCCAGTCCTCAAAGCGCAGGACGCTCTTTTTT
Found at i:338284 original size:61 final size:61
Alignment explanation
Indices: 338153--338327 Score: 275
Period size: 61 Copynumber: 2.9 Consensus size: 61
338143 GAGCAGGACG
* *
338153 CCTTTTAAAGCCCACACAAGCTGGTGGCACCTTT-AGTCCTCAAAGAGTAGGACGCCTTCT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGTAGGACGCCTTCT
338213 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGTAGGACG-CTT-T
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGTAGGACGCCTTCT
* *
338272 CTTTTTGCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGAC
1 CCTTTT--AAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGTAGGAC
338328 ACACTTCCTT
Statistics
Matches: 108, Mismatches: 4, Indels: 5
0.92 0.03 0.04
Matches are distributed among these distances:
59 6 0.06
60 35 0.32
61 67 0.62
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (61 bp):
CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGTAGGACGCCTTCT
Found at i:338296 original size:215 final size:216
Alignment explanation
Indices: 337918--338327 Score: 569
Period size: 215 Copynumber: 1.9 Consensus size: 216
337908 GCACCTTTCA
* ** *
337918 GTCCTCAAAGAGCAAGATGCCTTTTAAAGCCCACATGAGTTGGTGGCACCCTCCAGTCCTCAAAG
1 GTCCTCAAAGAGCAAGACGCCTTTTAAAGCCCACACAAGCTGGTGGCACCCTCCAGTCCTCAAAG
* * * *
337983 CGTAGGACGCCTTTTTTCTTTTAAAGCCCACACAAGTTGATGGCACCTTTAGTCCTCGAAGAGCA
66 AGTAGGACGCCTTTCTCCTTTTAAAGCCCACACAAGTTGATGGCACCTTTAGTCCTCAAAGAGCA
* *
338048 GGACGCCTTCTCCTTTTAAAGCCTATACAAGTTGGTGGCACTTC-CTAGTCCTCAAACAGCAGGA
131 GGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCTC-AGTCCTCAAACAGCAGGA
338112 CGCTCTTTCCTTTTGCCTTTTT
195 CGCTCTTTCCTTTTGCCTTTTT
* * **
338134 GTCCTTAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGCTGGTGGCA-CCTTTAGTCCTCAAAG
1 GTCCTCAAAGAGCAAGACGCCTTTTAAAGCCCACACAAGCTGGTGGCACCCTCCAGTCCTCAAAG
* * *
338198 AGTAGGACGCC-TTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGT
66 AGTAGGACGCCTTTCTCCTTTTAAAGCCCACACAAGTTGATGGCACCTTT-AGTCCTCAAAGAGC
* * *
338262 AGGACG-CTT-TCTTTTTGCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAG
130 AGGACGCCTTCTCCTTTT--AAAGCCCACACAAGTTGGTGGCACTTCTCAGTCCTCAAACAGCAG
338325 GAC
193 GAC
338328 ACACTTCCTT
Statistics
Matches: 170, Mismatches: 20, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
213 6 0.04
214 37 0.22
215 84 0.49
216 43 0.25
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (216 bp):
GTCCTCAAAGAGCAAGACGCCTTTTAAAGCCCACACAAGCTGGTGGCACCCTCCAGTCCTCAAAG
AGTAGGACGCCTTTCTCCTTTTAAAGCCCACACAAGTTGATGGCACCTTTAGTCCTCAAAGAGCA
GGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCTCAGTCCTCAAACAGCAGGAC
GCTCTTTCCTTTTGCCTTTTT
Found at i:338409 original size:42 final size:45
Alignment explanation
Indices: 338310--338415 Score: 146
Period size: 45 Copynumber: 2.4 Consensus size: 45
338300 GCACTTTTCA
* * *
338310 GTCCTCAAAGAGCAGGACACACTTCCTTCTCTTCTTTTCTCTTTT
1 GTCCTCAAAGAGCAGGACGCACTTCATTCTCTCCTTTTCTCTTTT
*
338355 GTCCTCAAAGAGCAGGACGCACTTTATT-T-TCCTTTT-TCTTTT
1 GTCCTCAAAGAGCAGGACGCACTTCATTCTCTCCTTTTCTCTTTT
*
338397 GTCCTCAGAGAGCAGGACG
1 GTCCTCAAAGAGCAGGACG
338416 TATTTCGTTT
Statistics
Matches: 56, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
42 24 0.43
43 6 0.11
44 1 0.02
45 25 0.45
ACGTcount: A:0.20, C:0.27, G:0.17, T:0.36
Consensus pattern (45 bp):
GTCCTCAAAGAGCAGGACGCACTTCATTCTCTCCTTTTCTCTTTT
Found at i:338431 original size:42 final size:42
Alignment explanation
Indices: 338310--338443 Score: 137
Period size: 42 Copynumber: 3.1 Consensus size: 42
338300 GCACTTTTCA
* ** *
338310 GTCCTCAAAGAGCAGGACACACTTCCTTCTCTTCTTTTCTCTTTT
1 GTCCTCAAAGAGCAGGACGCACTTTATT-TC-CCTTTT-TCTTTT
*
338355 GTCCTCAAAGAGCAGGACGCACTTTATTTTCCTTTTTCTTTT
1 GTCCTCAAAGAGCAGGACGCACTTTATTTCCCTTTTTCTTTT
* * *
338397 GTCCTCAGAGAGCAGGACGTA-TTTCGTTTCCCTTTTTCCTTTT
1 GTCCTCAAAGAGCAGGACGCACTTT-ATTTCCCTTTTT-CTTTT
338440 -TCCT
1 GTCCT
338444 TGAAAAACGG
Statistics
Matches: 78, Mismatches: 9, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
41 3 0.04
42 39 0.50
43 10 0.13
44 1 0.01
45 25 0.32
ACGTcount: A:0.16, C:0.28, G:0.14, T:0.42
Consensus pattern (42 bp):
GTCCTCAAAGAGCAGGACGCACTTTATTTCCCTTTTTCTTTT
Found at i:339403 original size:20 final size:20
Alignment explanation
Indices: 339380--339417 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
339370 ATACTTTTTG
*
339380 CATTGCATCGATACATTGCT
1 CATTGCATAGATACATTGCT
*
339400 CATTGTATAGATACATTG
1 CATTGCATAGATACATTG
339418 TATCGATACA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37
Consensus pattern (20 bp):
CATTGCATAGATACATTGCT
Found at i:339416 original size:13 final size:13
Alignment explanation
Indices: 339400--339429 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
339390 ATACATTGCT
339400 CATTGTATAGATA
1 CATTGTATAGATA
*
339413 CATTGTATCGATA
1 CATTGTATAGATA
339426 CATT
1 CATT
339430 CAGGCATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.40
Consensus pattern (13 bp):
CATTGTATAGATA
Found at i:341800 original size:51 final size:51
Alignment explanation
Indices: 341734--341896 Score: 179
Period size: 51 Copynumber: 3.2 Consensus size: 51
341724 CATCTCGAGA
* * * *
341734 ATACTCCAA-TCCCGATTTCATTTCCAAAACATCAATTTTTCTTAATC-GGAG
1 ATACTCCAACT-CCGATTTTATTTCCAAAACACCAATTTTCCATAATCAGG-G
* * *
341785 ATACTCTAACTCCGATTTTATTTCTAAAACACCCATTTTCCATAATCAGGG
1 ATACTCCAACTCCGATTTTATTTCCAAAACACCAATTTTCCATAATCAGGG
* * **
341836 ATACTCCAACTCCGATTTTATTTCCAAAACACCGACTTTT-CACAATTGGGG
1 ATACTCCAACTCCGATTTTATTTCCAAAACACC-AATTTTCCATAATCAGGG
341887 ATACTCCAAC
1 ATACTCCAAC
341897 CCCGTTATTT
Statistics
Matches: 95, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
51 88 0.93
52 7 0.07
ACGTcount: A:0.31, C:0.27, G:0.09, T:0.33
Consensus pattern (51 bp):
ATACTCCAACTCCGATTTTATTTCCAAAACACCAATTTTCCATAATCAGGG
Found at i:342007 original size:50 final size:51
Alignment explanation
Indices: 341910--342028 Score: 168
Period size: 50 Copynumber: 2.4 Consensus size: 51
341900 GTTATTTTGA
* * * * *
341910 GGGGACACTCTAACCCCAGTTTTATTTCTAAAATATTAATATCTCATAATC
1 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATATCTCATAATC
* *
341961 -GGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTCATAATC
1 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATATCTCATAATC
342011 GGGGATACTCCAACCCCG
1 GGGGATACTCCAACCCCG
342029 TTATTTCTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
50 43 0.72
51 17 0.28
ACGTcount: A:0.30, C:0.25, G:0.13, T:0.32
Consensus pattern (51 bp):
GGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATATCTCATAATC
Found at i:342016 original size:128 final size:130
Alignment explanation
Indices: 341800--342158 Score: 445
Period size: 128 Copynumber: 2.8 Consensus size: 130
341790 CTAACTCCGA
* * * * *
341800 TTTTATTTCTAAAACACCCATTTTCCATAATCAGGGATACTCCAACTCCGATTTTATTTCCAAAA
1 TTTTATTTATAAAACACCAATTCTCCATAATCAGGGATACTCCAACCCCGGTTTTATTTCCAAAA
* * *
341865 CACCGACTTTTCACAATTGGGGATACTCCAACCCCGTTATTT-TGAGGGGACACTCTAACCCCAG
66 CATCGATTTTTCACAATTGGGGATACTCCAACCCCGTTATTTCTGAGGGGACACTCCAACCCCAG
* * ** *
341929 TTTTATTTCTAAAATATTAATATCT-CATAATC-GGGATACTCCAACCCCGGTTTTATTTCTAAA
1 TTTTATTTATAAAACACCAAT-TCTCCATAATCAGGGATACTCCAACCCCGGTTTTATTTCCAAA
* * * * * *
341992 ACATCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTCTGAGGGGATACTCCAACCTCG
65 ACATCGATTTTTCACAATTGGGGATACTCCAACCCCGTTATTTCTGAGGGGACACTCCAACCCCA
342057 G
130 G
* * *
342058 TTTTATTTATAAAACACCAATTCTCCACAATCGGGGATACTCCAACCCCGGCTTTATTTCCAAAA
1 TTTTATTTATAAAACACCAATTCTCCATAATCAGGGATACTCCAACCCCGGTTTTATTTCCAAAA
* * * * *
342123 TATTGATTTCTCACAATTAGGGATACTTCAACCCCG
66 CATCGATTTTTCACAATTGGGGATACTCCAACCCCG
342159 GCCTTATTTC
Statistics
Matches: 194, Mismatches: 32, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
128 69 0.36
129 65 0.34
130 60 0.31
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.33
Consensus pattern (130 bp):
TTTTATTTATAAAACACCAATTCTCCATAATCAGGGATACTCCAACCCCGGTTTTATTTCCAAAA
CATCGATTTTTCACAATTGGGGATACTCCAACCCCGTTATTTCTGAGGGGACACTCCAACCCCAG
Found at i:342092 original size:79 final size:79
Alignment explanation
Indices: 341961--342107 Score: 240
Period size: 79 Copynumber: 1.9 Consensus size: 79
341951 TCTCATAATC
* * * * *
341961 GGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCAACC
1 GGGATACTCCAACCCCGGTTTTATTTATAAAACACCAATTCTCCACAATCGGGGATACTCCAACC
342026 CCGTTATTTCTGAG
66 CCGTTATTTCTGAG
*
342040 GGGATACTCCAACCTCGGTTTTATTTATAAAACACCAATTCTCCACAATCGGGGATACTCCAACC
1 GGGATACTCCAACCCCGGTTTTATTTATAAAACACCAATTCTCCACAATCGGGGATACTCCAACC
342105 CCG
66 CCG
342108 GCTTTATTTC
Statistics
Matches: 62, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
79 62 1.00
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.29
Consensus pattern (79 bp):
GGGATACTCCAACCCCGGTTTTATTTATAAAACACCAATTCTCCACAATCGGGGATACTCCAACC
CCGTTATTTCTGAG
Found at i:342115 original size:51 final size:51
Alignment explanation
Indices: 342039--342206 Score: 203
Period size: 51 Copynumber: 3.3 Consensus size: 51
342029 TTATTTCTGA
* * * * ** *
342039 GGGGATACTCCAACCTCGGTTTTATTTATAAAACA-CCAATTCTCCACAATC
1 GGGGATACTCCAACCCCGGCTTTATTTCTAAAATATTGATTTCT-CACAATC
* *
342090 GGGGATACTCCAACCCCGGCTTTATTTCCAAAATATTGATTTCTCACAATT
1 GGGGATACTCCAACCCCGGCTTTATTTCTAAAATATTGATTTCTCACAATC
* * *
342141 AGGGATACTTCAACCCCGGCCTTATTTCTAAAATATTGATTTCTCACAATC
1 GGGGATACTCCAACCCCGGCTTTATTTCTAAAATATTGATTTCTCACAATC
*
342192 GGGGACACTCCAACC
1 GGGGATACTCCAACC
342207 TCGTTATTTT
Statistics
Matches: 99, Mismatches: 17, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
51 94 0.95
52 5 0.05
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.30
Consensus pattern (51 bp):
GGGGATACTCCAACCCCGGCTTTATTTCTAAAATATTGATTTCTCACAATC
Found at i:342173 original size:181 final size:180
Alignment explanation
Indices: 341910--342234 Score: 454
Period size: 181 Copynumber: 1.8 Consensus size: 180
341900 GTTATTTTGA
* * * * *
341910 GGGGACACTCTAACCCCAGTTTTATTTCTAAAATATTAATATCTCATAATCGGGATACTCCAACC
1 GGGGACACTCCAACCCCAGCTTTATTTCCAAAATATTAATATCTCACAATAGGGATACTCCAACC
** * * *
341975 CCGGTTTTATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCAACCCCGTTA-TTTCTGA
66 CCGGCCTTATTTCTAAAACATCAATTTCTCACAATCGGGGACACTCCAACCCCGTTATTTTC-GA
342039 GGGGATACTCCAACCTCGGTTTTATTTATAAAACACCAATTCTCCACAATC
130 GGGGATACTCCAACCTCGGTTTTATTTATAAAACACCAATTCTCCACAATC
* * * * *
342090 GGGGATACTCCAACCCCGGCTTTATTTCCAAAATATTGATTTCTCACAATTAGGGATACTTCAAC
1 GGGGACACTCCAACCCCAGCTTTATTTCCAAAATATTAATATCTCACAA-TAGGGATACTCCAAC
* ** *
342155 CCCGGCCTTATTTCTAAAATATTGATTTCTCACAATCGGGGACACTCCAACCTCGTTATTTTCGA
65 CCCGGCCTTATTTCTAAAACATCAATTTCTCACAATCGGGGACACTCCAACCCCGTTATTTTCGA
342220 GGGGATACTCCAACC
130 GGGGATACTCCAACC
342235 CCGTTATTAT
Statistics
Matches: 124, Mismatches: 19, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
180 41 0.33
181 79 0.64
182 4 0.03
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.32
Consensus pattern (180 bp):
GGGGACACTCCAACCCCAGCTTTATTTCCAAAATATTAATATCTCACAATAGGGATACTCCAACC
CCGGCCTTATTTCTAAAACATCAATTTCTCACAATCGGGGACACTCCAACCCCGTTATTTTCGAG
GGGATACTCCAACCTCGGTTTTATTTATAAAACACCAATTCTCCACAATC
Found at i:346323 original size:9 final size:9
Alignment explanation
Indices: 346311--346371 Score: 50
Period size: 9 Copynumber: 6.1 Consensus size: 9
346301 CTCTCTCTAT
346311 TATCTCTCC
1 TATCTCTCC
346320 TATCTCTCCTCC
1 TA--TCT-CTCC
*
346332 TATCATCCTTCT
1 TATC-T-C-TCC
*
346344 TATCTCTAC
1 TATCTCTCC
346353 TATCTCTCC
1 TATCTCTCC
346362 TATCTCTCC
1 TATCTCTCC
346371 T
1 T
346372 CCTATCATCC
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
9 21 0.49
10 3 0.07
11 7 0.16
12 12 0.28
ACGTcount: A:0.13, C:0.41, G:0.00, T:0.46
Consensus pattern (9 bp):
TATCTCTCC
Found at i:346331 original size:12 final size:12
Alignment explanation
Indices: 346316--346392 Score: 60
Period size: 12 Copynumber: 6.9 Consensus size: 12
346306 TCTATTATCT
346316 CTCCTATCTCTC
1 CTCCTATCTCTC
*
346328 CTCCTATC-ATC
1 CTCCTATCTCTC
* *
346339 CTTCT-TATCT-
1 CTCCTATCTCTC
*
346349 CTACTA--TCT-
1 CTCCTATCTCTC
346358 CTCCTATCTCTC
1 CTCCTATCTCTC
346370 CTCCTATCATC-C
1 CTCCTATC-TCTC
346382 CTCCTATCTCT
1 CTCCTATCTCT
346393 TCTTTCTCTT
Statistics
Matches: 52, Mismatches: 6, Indels: 14
0.72 0.08 0.19
Matches are distributed among these distances:
9 8 0.15
10 5 0.10
11 12 0.23
12 25 0.48
13 2 0.04
ACGTcount: A:0.13, C:0.44, G:0.00, T:0.43
Consensus pattern (12 bp):
CTCCTATCTCTC
Found at i:346347 original size:24 final size:23
Alignment explanation
Indices: 346307--346392 Score: 90
Period size: 24 Copynumber: 3.8 Consensus size: 23
346297 CCTCCTCTCT
*
346307 CTATTATCTCTCCTATCTCTCCTC
1 CTATCATC-CTCCTATCTCTCCTC
* * *
346331 CTATCATCCTTCT-TATCT-CTA
1 CTATCATCCTCCTATCTCTCCTC
346352 CTATC-T-CTCCTATCTCTCCTC
1 CTATCATCCTCCTATCTCTCCTC
346373 CTATCATCCCTCCTATCTCT
1 CTATCAT-CCTCCTATCTCT
346393 TCTTTCTCTT
Statistics
Matches: 50, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
19 4 0.08
20 5 0.10
21 14 0.28
22 5 0.10
23 4 0.08
24 18 0.36
ACGTcount: A:0.14, C:0.42, G:0.00, T:0.44
Consensus pattern (23 bp):
CTATCATCCTCCTATCTCTCCTC
Found at i:346350 original size:42 final size:42
Alignment explanation
Indices: 346283--346401 Score: 166
Period size: 42 Copynumber: 2.8 Consensus size: 42
346273 TTCTCTCCTC
* * * *
346283 CTCCTCCTGTCCTCCCTCCTCTCTCTATTATCTCTCCTATCT
1 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTATCT
* *
346325 CTCCTCCTATCATCCTTCTTATCTCTACTATCTCTCCTATCT
1 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTATCT
* *
346367 CTCCTCCTATCATCCCTCCTATCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCT
346402 TTGAGGGCTA
Statistics
Matches: 67, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 67 1.00
ACGTcount: A:0.10, C:0.45, G:0.01, T:0.45
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTATCT
Found at i:349026 original size:475 final size:476
Alignment explanation
Indices: 347999--351881 Score: 4983
Period size: 474 Copynumber: 8.2 Consensus size: 476
347989 CGTTCTCATC
* * * *
347999 ATTTTGATACGAAAGAAAATTATCAATATCATTTATCCTAAAGAGGAGAATGTGCTTATAGTGCC
1 ATTTTCATACAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCC
*
348064 TAATCATC-AAATGAATGAAGATCATTACTAGAATCCATGTTTGCCTCATTTGAGGCACGAACTT
66 TAATCA-CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTT
** * *
348128 AGACTTTACAAAAATTGGTCTGAAAAA-GCCTTTCTTAC-GAAACCAAAATATCAATATCGCGTA
130 AGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCAG-AACCAAAACATCAATATCGCGTA
* * *
348191 TCCTAAAGAGAAGA-AAGTGTTTTTGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTAT
194 TCCTAATGAGAAGACAA-TGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTAT
* * * * *
348255 TCATGTTTGTCTTTTTTACGAGACAAGCTTTGATTCCATAAAAAATGGTGGAAA-AATAAGCTTT
258 TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTGGAAAGAA-AAGCTTT
* * * * ** *
348319 TCTTGCGACACCAAAGCATTAATGTCTTGTATCCTATTGATGGGAAAGCATTTTTGGTTCCCAAT
322 TCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGCTCCCAAT
* * * * *
348384 CTTGAAAAGAATGGGGACTATTACAAGAATGGATGCTTGTCTTATTTAAGGGATGAACTTTGATT
387 CTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATT
* * *
348449 TT-ATGAAGCATAAGGGTAAAGAAAAG
452 TTAAGGAA-AAT-AGGGCAAAGAAAAG
* *
348475 A-TTTCTATGC-AAA-AAAATCATCAATATCCTTTATCCTAATGAGGAGAATGTGCTTATAGTGC
1 ATTTTC-ATACAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGC
* * * * ** *
348537 CTAATCATAAAATGAATGAAGATCATTACAAGAATCTATGTTTGTCCCATTTGAGAAATGAACTT
65 CTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTT
* * *
348602 AAACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCAGAACCAAAACATCAATATTGTGTAT
130 AGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCAGAACCAAAACATCAATATCGCGTAT
* * * * * * *
348667 CCTAATGAGAAGACTATGTTTACGATGCATAATCCTAAAAAGAATTGGGATTAGTATGACCATTT
195 CCTAATGAGAAGACAATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTC
*
348732 ATGTTTGTCTAATTTAAGAGACAAACTTTGATTCTAT-AAAAACGGTGGAAAGAAAAGCTTTTCT
260 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTGGAAAGAAAAGCTTTTCT
*
348796 TGCGACACCAAAGCATCAATGTCGTGTATCCTATTGAAGGGAATGTGTTTTTGG-TACCCAATCT
325 TGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGCT-CCCAATCT
* * * * *
348860 TGAAAAGAATAGAGATTATTCCGAGAATCGATGCTTATCTTATTTAAGGGATGAACTTTAATTTT
389 TGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT
* *
348925 TAGGAAAATAGGGCAAACAAAAG
454 AAGGAAAATAGGGCAAAGAAAAG
*
348948 ATTTTCATACAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAAAATGTGCTTATAGTGCC
1 ATTTTCATACAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCC
* * * *
349013 TAATAACAAAATGAATGAAGATCATTACTAGAATCCATCTTTGTCCCATTTGAGGCATGAACTTA
66 TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTA
** * **
349078 GA-TTTACAAAAATCAGTGGG-AAAATGCCTTTCATGTG-A-AACCAAAACCTCAATATCATGTA
131 GACTTTACAAAAATTGGTGGGAAAAATGCCTTTC-T-TGCAGAACCAAAACATCAATATCGCGTA
* * * *
349139 TCCTAATGAGAAGACAATGTTTATGGTGCCTAATCTTAAAAAAAATGGGGATTAGTATAAGTATT
194 TCCTAATGAGAAGACAATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATT
** * *
349204 CATGTTTGTCTTATTTAAGAGACAAACTTTGATAATATCAAAAACGGTGGAAAGAAAAGCCTTTC
259 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTGGAAAGAAAAGCTTTTC
* *
349269 TTGC-ACCACCAAAGCAACAATGCCATGTATCCTATTGAAGGGAATGTGTTTTTGGCTCCCAATC
324 TTGCGA-CACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGCTCCCAATC
* ** * * *
349333 ATGAAAAGAATGGAGATTGTTGTGAGAACCGATGCTTGTCTTATTTAAGGGATGAATTTTAATTT
388 TTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTT
* * * *
349398 TAAGAAAAATAAGGCAAATAAATG
453 TAAGGAAAATAGGGCAAAGAAAAG
* * * * * * *
349422 ATTTCCACAAAAAAGAAAATCATCAATATCATTTCTCCCAATGA-G-GAATGTGTTTATAGGGCC
1 ATTTTCATACAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCC
*
349485 TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACATA
66 TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTA
* * ** * * * *
349550 GACTTCATAAAAATTTCTGGGAAAAATGCTTTTCTTGCAAAACCAAAGCATCAATATCGTGTATC
131 GACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCAGAACCAAAACATCAATATCGCGTATC
* * * ** * *
349615 TTAGTGAGAAGGAC-ATTTTTATGGTGCCTAATCCTAAAAATCATGGGGATTAGTATAAGTATTC
196 CTAATGAGAA-GACAATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTC
* * *
349679 ATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATAAAAAACGGAGGAAAGAAAAGCTTTTCA
260 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTGGAAAGAAAAGCTTTTCT
* * * *
349744 TGCGGCACTAAAGCATCAAGGTCATGTATCCTATTGAAGGGAATGTGTTTGTGGCTCCCAATCTT
325 TGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGCTCCCAATCTT
* * *
349809 GAAAAGAATGGAGATTGTTACGATAATCAATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTA
390 GAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA
*
349874 AGGAAAATAGGGCAAAGAAAAA
455 AGGAAAATAGGGCAAAGAAAAG
* *
349896 ATTTTGATACAAAAGAAAATCATCAAT-TCATTTATCCTAATGAGGAGAATGTGCTTATTGTGCC
1 ATTTTCATACAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCC
* * * * *
349960 TAATCACAAAATGAACGAAGATCATTACTAGAATCCATGTTTGTCTCAATTAAGGTATGAACTTA
66 TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTA
* *
350025 GACTTTACAAAAATT-GTGGGAAAAATGCCTTTTTTGCAAAACCAAAACATCAATATCGCGTATC
131 GACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCAGAACCAAAACATCAATATCGCGTATC
* * * * * *
350089 TTAATGAGAAAACAATGTTTATGGTGCTTAATCCTGAAAAGAATGGGGATTAGTTTGACCATTCA
196 CTAATGAGAAGACAATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCA
* *
350154 TGTTTGTCTTGTTTAAGAGACAAACTTTGATTCCT-TGAAAAGA-GGTGGAAAGAAAAGCTTTTC
261 TGTTTGTCTTATTTAAGAGACAAACTTTGATT-CTAT-AAAAAACGGTGGAAAGAAAAGCTTTTC
* * * * *
350217 TTGCGGCACCAAAGTATCAATGTCATGCATCCTATTGAAGAGAATGTGTTTTTGG-TACCAAATC
324 TTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGCT-CCCAATC
* * * * *
350281 TTGAAAAGAATGTAGTTTGTTACGTGAATCGATGTTTGTCTTATTTAAAGGATGAACTTTGATTT
388 TTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTT
* * *
350346 TATGGAAAATAGGGAAAAGAAAAA
453 TAAGGAAAATAGGGCAAAGAAAAG
* * * * * **
350370 AATTTGATACAAATGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGCTTATAATGGT
1 ATTTTCATACAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCC
* * * *
350435 TGATCACAAAATGACTAAAGATCATTACTAAAATCCATGTTTGTCTCATTTGAGGCACGAACTTA
66 TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTA
*
350500 GACTTTACAAAAATTGGTCGGAAAAATGCCTTTCTTGCTA-AACCAAAACATCAATATCGCGTAT
131 GACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGC-AGAACCAAAACATCAATATCGCGTAT
* * * * * * * *
350564 CCTAATGAGAAGACTATATTTATGGTGTCAAATCCTGAAAAGAATGGGGATTAGTTTGACTGTCC
195 CCTAATGAGAAGACAATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTC
* *
350629 ACG-TTGTCTTATTTAAGAGACAAATTTTGATTCTA-ACAAAAACGGTGGAAAGAAAAGCTTTTC
260 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATA-AAAAACGGTGGAAAGAAAAGCTTTTC
*
350692 TTGCAACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGG-TACCCAATC
324 TTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGCT-CCCAATC
** * * *
350756 TTGAAATCAATGGAGATTGTTATGAGAATCGATGCTTGTCTTACTTAGGGGATGAACTTTGATTT
388 TTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTT
350821 TAAGGAAAATAGGGCAAAGAAAAG
453 TAAGGAAAATAGGGCAAAGAAAAG
* * * * * *
350845 ATTTTGATACAAAAGGAAATCATTAAAATCGTTTATCCTAAAT-AGGAGAATGTGCTTATAGTAC
1 ATTTTCATACAAAAGAAAATCATCAATATCATTTATCCT-AATGAGGAGAATGTGCTTATAGTGC
* **
350909 CTAATCATAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACAG
65 CTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTT
* ** * * * * * *
350974 AGATTTTACAAAAATTGGTCAGAAAAAAGCCTTTCTTAC-GAAACCAAAACCTTAATATTGCATA
130 AGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCAG-AACCAAAACATCAATATCGCGTA
* * *
351038 TCCTAATGAAAAGA-AAGTGTTTATGGTGCCTAATCCTGAAAAGAATGAGGATTAGTATGACTAT
194 TCCTAATGAGAAGACAA-TGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTAT
* * * * * * * *
351102 TCGTGTTTGTCTTTTTTATGAAACAAACTATGATTCTATCAAAAACGGTGGAAGGAATAGCTTTT
258 TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTGGAAAGAAAAGCTTTT
** * *
351167 CTTGCGACACTGAAGCATCAATGTCGTGTATCCTATTGAAGGGACTGTGTTTTTGGCTCCCAATC
323 CTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGCTCCCAATC
* * *
351232 TTGAAAACAATGGAGATTGTTATGAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTT
388 TTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTT
* *
351297 TAAGGAAAATAAGGCAAATAAAAG
453 TAAGGAAAATAGGGCAAAGAAAAG
* *** * *
351321 ATTTCCACGTAAAAGAAAATCATCAATATCATTTCTCCTAATGAGGAG--TGTGCTTATGGTGCC
1 ATTTTCATACAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCC
* * * *
351384 TAATCACAAAATGAATGATGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGTATGAACATA
66 TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTA
* * * * * * * *
351449 AACTTTATAAAAATTTGTGGGAAAAATGCTTTTCTAG-GGAAACCAAAGCATCAATATCGTGTAT
131 GACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCAG-AACCAAAACATCAATATCGCGTAT
* * *
351513 CTTAATGAGAAGA-ACATTTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATT
195 CCTAATGAGAAGACA-ATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATT
*
351577 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATTAAAAACGGTGGAAAGAAAAGCTTTTC
259 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTGGAAAGAAAAGCTTTTC
* * * * *
351642 ATGCGACACTAAAGCATCAAGGTCATGTATCCTATTGAAGGGGATGTGTTTTTGGCTCCTAATCT
324 TTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGCTCCCAATCT
*
351707 TGAAAAGAATGGAGATTGTTAGGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT
389 TGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT
* * *
351772 AAAGAAAATAAGGCAAATAAAAG
454 AAGGAAAATAGGGCAAAGAAAAG
* *** * * *
351795 ATTTCCACGTAAAAGAAAATCATCAATACCATTTCTCCTAATGAGGAGAATGTGCTTATTGTGCC
1 ATTTTCATACAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCC
*
351860 TAATCATAAAATGAATGAAGAT
66 TAATCACAAAATGAATGAAGAT
351882 GATGACAACC
Statistics
Matches: 2983, Mismatches: 378, Indels: 92
0.86 0.11 0.03
Matches are distributed among these distances:
472 79 0.03
473 173 0.06
474 1520 0.51
475 841 0.28
476 368 0.12
477 2 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (476 bp):
ATTTTCATACAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCC
TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTA
GACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCAGAACCAAAACATCAATATCGCGTATC
CTAATGAGAAGACAATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCA
TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTGGAAAGAAAAGCTTTTCTT
GCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGCTCCCAATCTTG
AAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAA
GGAAAATAGGGCAAAGAAAAG
Found at i:351794 original size:159 final size:159
Alignment explanation
Indices: 348207--351794 Score: 811
Period size: 159 Copynumber: 22.7 Consensus size: 159
348197 AGAGAAGAAA
* * * * * * *
348207 GTGTTTTTGGTGCCTAATCCTGAAAAGAATGGGGATTAG-TATGACTATTC-ATGTTTGTCTTTT
1 GTGTTTATGGTGCCTAATCTTGAAAAGAATGGAGATT-GTTATGA-GAATCGATGCTTGTCTTAT
* * * ** * * * * *
348270 TTACGAGA-CAAGCTTTGATTCCATAAAAAAT-GGTGGAAA-AATAAGCTTTTCTTGCGACACCA
64 TTAAGGGATGAA-CTTTGATTTTA-AAAAAATAAGTGCAAATAA-AAGCTTTTCATGCGAAACTA
* * * * *
348332 AAGCATTAATGTCTTGTATCCTATTGATGG-GAAA
126 AAGCATCAATATCATGTATCCTATTGAAGGAG-AT
** * * * * * * ** *
348366 GCATTTTTGGTTCCCAATCTTGAAAAGAATGGGGACTATTACAAGAATGGATGCTTGTCTTATTT
1 GTGTTTATGGTGCCTAATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTT
* ** * * * * * *
348431 AAGGGATGAACTTTGATTTTATGAAGCATAAGGGTAAAGAAAAG-ATTTCTATGC-AAA-AAAAT
66 AAGGGATGAACTTTGATTTTA-AAAAAATAAGTGCAAATAAAAGCTTTTC-ATGCGAAACTAAAG
* * *
348493 CATCAATATCCTTTATCCTAATG-AGGAGAAT
129 CATCAATATCATGTATCCTATTGAAGGAG-AT
* * * * ** ** * * **
348524 GTGCTTATAGTGCCTAATCAT-AAAATGAATGAAGATCATTACAAGAATCTATGTTTGTCCCATT
1 GTGTTTATGGTGCCTAATCTTGAAAA-GAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATT
* ** ** * * ** ** * * * * *
348588 TGAGAAATGAACTTAAACTTTACAAAAATTGGTGGGAA-AAATGCCTTTCTTGC-AGAACCAAAA
65 TAAGGGATGAACTTTGATTTTAAAAAAATAAGTGCAAATAAAAGCTTTTCATGCGA-AACTAAAG
** * *
348651 CATCAATATTGTGTATCCTAATG-AGAAGACT
129 CATCAATATCATGTATCCTATTGAAGGAGA-T
* * * * * * ** ** * *
348682 ATGTTTACGATGCATAATCCTAAAAAGAATTGG-GATTAG-TATGACCATTTATGTTTGTCTAAT
1 GTGTTTATGGTGCCTAATCTTGAAAAGAA-TGGAGATT-GTTATGAGAATCGATGCTTGTCTTAT
* ** * * ** * * * * *
348745 TTAAGAGACAAACTTTGATTCTATAAAAA-CGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAG
64 TTAAGGGATGAACTTTGATTTTAAAAAAATAAGTGCAAATAAAAGCTTTTCATGCGAAACTAAAG
* *
348809 CATCAATGTCGTGTATCCTATTGAAGG-GAAT
129 CATCAATATCATGTATCCTATTGAAGGAG-AT
* * * * * ** *
348840 GTGTTTTTGGTACCCAATCTTGAAAAGAATAGAGATTATTCCGAGAATCGATGCTTATCTTATTT
1 GTGTTTATGGTGCCTAATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTT
* ** * * * * * ** *
348905 AAGGGATGAACTTTAATTTTTAGGAAAAT-AGGGCAAACAAAAGATTTTCATACAAAAGAAAATC
66 AAGGGATGAACTTTGA-TTTTAAAAAAATAAGTGCAAATAAAAGCTTTTCATGCGAAACTAAAGC
* * *
348969 ATCAATATCATTTATCCTAATG-AGGAAAAT
130 ATCAATATCATGTATCCTATTGAAGG-AGAT
* * *** * ** * **
348999 GTGCTTATAGTGCCTAAT-AACAAAATGAATGAAGATCATTACT-AGAATCCAT-CTTTGTCCCA
1 GTGTTTATGGTGCCTAATCTTGAAAA-GAATGGAGATTGTTA-TGAGAATCGATGC-TTGTCTTA
* * * * * ** * * * *
349061 TTTGAGGCATGAACTTAGA-TTTACAAAAATCAGTG-GGA-AAATGCCTTTCATGTGAAACCAAA
63 TTTAAGGGATGAACTTTGATTTTAAAAAAATAAGTGCAAATAAAAGCTTTTCATGCGAAACTAAA
* * * * *
349123 ACCTCAATATCATGTATCCTAATG-AGAAGACA
128 GCATCAATATCATGTATCCTATTGAAGGAGA-T
* * * * * * *
349155 ATGTTTATGGTGCCTAATCTTAAAAAAAATGGGGATTAG-TATAAGTATTC-ATGTTTGTCTTAT
1 GTGTTTATGGTGCCTAATCTTGAAAAGAATGGAGATT-GTTATGAG-AATCGATGCTTGTCTTAT
* ** ** * ** * * * * * *
349218 TTAAGAGACAAACTTTGATAATATCAAAAA-CGGTGGAAAGAAAAGCCTTTCTTGC-ACCACCAA
64 TTAAGGGATGAACTTTGATTTTA-AAAAAATAAGTGCAAATAAAAGCTTTTCATGCGA-AACTAA
* **
349281 AGCAACAATGCCATGTATCCTATTGAAGG-GAAT
127 AGCATCAATATCATGTATCCTATTGAAGGAG-AT
* * * * *
349314 GTGTTTTTGGCT-CCCAATCATGAAAAGAATGGAGATTGTTGTGAGAACCGATGCTTGTCTTATT
1 GTGTTTATGG-TGCCTAATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATT
* * * * * **** ** *
349378 TAAGGGATGAATTTTAATTTTAAGAAAAATAAG-GCAAATAAATGATTTCCACAAAAAAGAAAAT
65 TAAGGGATGAACTTTGATTTTAA-AAAAATAAGTGCAAATAAAAGCTTTTCATGCGAAACTAAAG
* * * *
349442 CATCAATATCATTTCTCCCAATG-AGGA-AT
129 CATCAATATCATGTATCCTATTGAAGGAGAT
** * ** * * *
349471 GTGTTTATAGG-GCCTAATC-ACAAAATGAATGAAGATCATTACT-AGAATCCATGTTTGTCTCA
1 GTGTTTAT-GGTGCCTAATCTTGAAAA-GAATGGAGATTGTTA-TGAGAATCGATGCTTGTCTTA
* * * * * * * * *** ** * * * *
349533 TTTGAGGCACGAACATAGACTTCATAAAAATTTCTGGGAA-AAATGCTTTTCTTGCAAAACCAAA
63 TTTAAGGGATGAACTTTGATTTTAAAAAAATAAGTGCAAATAAAAGCTTTTCATGCGAAACTAAA
* * * *
349597 GCATCAATATCGTGTATCTTAGTGAGAAGGACAT
128 GCATCAATATCATGTATCCTA-T-TGAAGGAGAT
* * ** * * * *
349631 -T-TTTATGGTGCCTAATCCTAAAAATCATGGGGATTAG-TATAAGTATTC-ATGTTTGTCTTAT
1 GTGTTTATGGTGCCTAATCTTGAAAAGAATGGAGATT-GTTATGAG-AATCGATGCTTGTCTTAT
* * *** * **
349692 TTAAGAGATAAACTTTGATTCTATAAAAAACGGAG-G-AAAGAAAAGCTTTTCATGCGGCACTAA
64 TTAAGGGATGAACTTTGATT-T-TAAAAAAATAAGTGCAAATAAAAGCTTTTCATGCGAAACTAA
**
349755 AGCATCAAGGTCATGTATCCTATTGAAGG-GAAT
127 AGCATCAATATCATGTATCCTATTGAAGGAG-AT
* * * * * *
349788 GTGTTTGTGGCT-CCCAATCTTGAAAAGAATGGAGATTGTTACGATAATCAATGTTTGTCTTATT
1 GTGTTTATGG-TGCCTAATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATT
* * * ** * * * ** *
349852 TAAGGGATGAACTTTGATTTTAAGGAAAAT-AGGGCAAAGAAAAAATTTTGATACAAAAGAAAAT
65 TAAGGGATGAACTTTGATTTTAA-AAAAATAAGTGCAAATAAAAGCTTTTCATGCGAAACTAAAG
* *
349916 CATCAAT-TCATTTATCCTAATG-AGGAGAAT
129 CATCAATATCATGTATCCTATTGAAGGAG-AT
* * ** * * ** * * * *
349946 GTGCTTATTGTGCCTAATC-ACAAAATGAACGAAGATCATTACT-AGAATCCATGTTTGTCTCAA
1 GTGTTTATGGTGCCTAATCTTGAAAA-GAATGGAGATTGTTA-TGAGAATCGATGCTTGTCTTAT
* * * * * ** * * * *
350009 TTAAGGTATGAACTTAGACTTTACAAAAAT-TGTGGGAA-AAATGCCTTTT-TTGCAAAACCAAA
64 TTAAGGGATGAACTTTGATTTTAAAAAAATAAGTGCAAATAAAAG-CTTTTCATGCGAAACTAAA
* ** * * * * *
350071 ACATCAATATCGCGTATCTTAATG-AGAAAACA
128 GCATCAATATCATGTATCCTATTGAAGGAGA-T
* * * * * * * *
350103 ATGTTTATGGTGCTTAATCCTGAAAAGAATGGGGATTAGTT-TGACCATTC-ATGTTTGTCTTGT
1 GTGTTTATGGTGCCTAATCTTGAAAAGAATGGAGATT-GTTATGA-GAATCGATGCTTGTCTTAT
* ** * * * * * * ** *
350166 TTAAGAGACAAACTTTGATTCCTT--GAAAAGAGGTGGAAAGAAAAGCTTTTCTTGCGGCACCAA
64 TTAAGGGATGAACTTTGATT--TTAAAAAAATAAGTGCAAATAAAAGCTTTTCATGCGAAACTAA
* * *
350229 AGTATCAATGTCATGCATCCTATTGAA-GAGAAT
127 AGCATCAATATCATGTATCCTATTGAAGGAG-AT
* * * * * * * *
350262 GTGTTTTTGGTACCAAATCTTGAAAAGAATGTAGTTTGTTACGTGAATCGATGTTTGTCTTATTT
1 GTGTTTATGGTGCCTAATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTT
* ** * * * *** * *
350327 AAAGGATGAACTTTGATTTTATGGAAAAT-AGGGAAAAGAAAAAAATTTGATAC-AAA-TGAAAA
66 AAGGGATGAACTTTGATTTTA-AAAAAATAAGTGCAAATAAAAGCTTTTCATGCGAAACT--AAA
* *
350389 TCATCAATATCATTTATCCTATTG-AGGAGAAT
128 GCATCAATATCATGTATCCTATTGAAGGAG-AT
* ** ** * ** * ** ** * * * *
350421 GTGCTTATAATGGTTGATC-ACAAAATGACTAAAGATCATTACT-AAAATCCATGTTTGTCTCAT
1 GTGTTTATGGTGCCTAATCTTGAAAA-GAATGGAGATTGTTA-TGAGAATCGATGCTTGTCTTAT
* * * * * * ** * * * * * *
350484 TTGAGGCACGAACTTAGACTTTACAAAAATTGGT-CGGAA-AAATGCCTTTCTTGCTAAACCAAA
64 TTAAGGGATGAACTTTGATTTTAAAAAAATAAGTGC-AAATAAAAGCTTTTCATGCGAAACTAAA
* ** * *
350547 ACATCAATATCGCGTATCCTAATG-AGAAGACT
128 GCATCAATATCATGTATCCTATTGAAGGAGA-T
* * * * * * *** * *
350579 ATATTTATGGTGTCAAATCCTGAAAAGAATGGGGATTAGTT-TGACTGTCCACG-TTGTCTTATT
1 GTGTTTATGGTGCCTAATCTTGAAAAGAATGGAGATT-GTTATGAGAATCGATGCTTGTCTTATT
* ** * * ** * * * *
350642 TAAGAGACAAATTTTGATTCTAACAAAAA-CGGTGGAAAGAAAAGCTTTTCTTGC-AACACCAAA
65 TAAGGGATGAACTTTGATTTTAA-AAAAATAAGTGCAAATAAAAGCTTTTCATGCGAA-ACTAAA
*
350705 GCATCAATGTCATGTATCCTATTGAAGG-GAAT
128 GCATCAATATCATGTATCCTATTGAAGGAG-AT
* * * ** *
350737 GTGTTTTTGGTACCCAATCTTGAAATCAATGGAGATTGTTATGAGAATCGATGCTTGTCTTACTT
1 GTGTTTATGGTGCCTAATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTT
* * * * * * * * ** *
350802 AGGGGATGAACTTTGATTTTAAGGAAAAT-AGGGCAAAGAAAAGATTTTGATACAAAAGGAAATC
66 AAGGGATGAACTTTGATTTTAA-AAAAATAAGTGCAAATAAAAGCTTTTCATGCGAAACTAAAGC
* * * * *
350866 ATTAAAATCGTTTATCCTA--AATAGGAGAAT
130 ATCAATATCATGTATCCTATTGA-AGGAG-AT
* * * * * ** * * *
350896 GTGCTTATAGTACCTAATCAT-AAAATGAATGAAGATCATTACT-AGAATCCATGTTTGTCTCAT
1 GTGTTTATGGTGCCTAATCTTGAAAA-GAATGGAGATTGTTA-TGAGAATCGATGCTTGTCTTAT
* * * *** * ** * * * *
350959 TTGAGGCACGAACAGAGATTTTACAAAAATTGGT-CAGAA-AAAAGCCTTTCTTACGAAACCAAA
64 TTAAGGGATGAACTTTGATTTTAAAAAAATAAGTGCA-AATAAAAGCTTTTCATGCGAAACTAAA
* * * * * *
351022 ACCTTAATAT--TGCATATCCTAATGAA-AAGAAA
128 GCATCAATATCATG--TATCCTATTGAAGGAG-AT
* * * * *
351054 GTGTTTATGGTGCCTAATCCTGAAAAGAAT-GAGGATTAG-TATGACTATTCG-TGTTTGTCTTT
1 GTGTTTATGGTGCCTAATCTTGAAAAGAATGGA-GATT-GTTATGA-GAATCGATGCTTGTCTTA
* ** ** * * * ** * ** * * * *
351116 TTTATGAAACAAACTATGATTCTATCAAAAA-CGGTGGAAGGAATAGCTTTTCTTGCGACACTGA
63 TTTAAGGGATGAACTTTGATTTTA-AAAAAATAAGTGCAAATAAAAGCTTTTCATGCGAAACTAA
* *
351180 AGCATCAATGTCGTGTATCCTATTGAAGG-GACT
127 AGCATCAATATCATGTATCCTATTGAAGGAGA-T
* * * *
351213 GTGTTTTTGGCT-CCCAATCTTGAAAACAATGGAGATTGTTATGAGAATTGATGCTTGTCTTATT
1 GTGTTTATGG-TGCCTAATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATT
* * * * ** ** *
351277 TAAGGGATGAACTTTGATTTTAAGGAAAATAAG-GCAAATAAAAGATTTCCACGTAAAAGAAAAT
65 TAAGGGATGAACTTTGATTTTAA-AAAAATAAGTGCAAATAAAAGCTTTTCATGCGAAACTAAAG
* * *
351341 CATCAATATCATTTCTCCTAATG-AGGAG-T
129 CATCAATATCATGTATCCTATTGAAGGAGAT
* ** ** * * *
351370 GTGCTTATGGTGCCTAATC-ACAAAATGAAT-GATGATCATTACT-AGAATCCATGTTTGTCTCA
1 GTGTTTATGGTGCCTAATCTTGAAAA-GAATGGA-GATTGTTA-TGAGAATCGATGCTTGTCTTA
* * * ** * * ** ** * * *
351432 TTTGAGGTATGAACATAAACTTTATAAAAATTTGTGGGAA-AAATGCTTTTC-TAGGGAAACCAA
63 TTTAAGGGATGAACTTTGATTTTAAAAAAATAAGTGCAAATAAAAGCTTTTCAT-GCGAAACTAA
* * * * *
351495 AGCATCAATATCGTGTATCTTAATGAGAAGAACAT
127 AGCATCAATATCATGTATCCT-AT-TGAAGGAGAT
* * * * *
351530 -T-TTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAG-TATGAGTATTC-ATGTTTGTCTTAT
1 GTGTTTATGGTGCCTAATCTTGAAAAGAATGGAGATT-GTTATGAG-AATCGATGCTTGTCTTAT
* ** * * ** * * *
351591 TTAAGAGACAAACTTTGATTCTATTAAAAA-CGGTGGAAAGAAAAGCTTTTCATGCGACACTAAA
64 TTAAGGGATGAACTTTGATTTTA-AAAAAATAAGTGCAAATAAAAGCTTTTCATGCGAAACTAAA
** *
351655 GCATCAAGGTCATGTATCCTATTGAAGGGGAT
128 GCATCAATATCATGTATCCTATTGAAGGAGAT
* *
351687 GTGTTTTTGGCT-CCTAATCTTGAAAAGAATGGAGATTGTTAGGAGAATCGATGCTTGTCTTATT
1 GTGTTTATGG-TGCCTAATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATT
351751 TAAGGGATGAACTTTGATTTTAAAGAAAATAAG-GCAAATAAAAG
65 TAAGGGATGAACTTTGATTTTAAA-AAAATAAGTGCAAATAAAAG
351795 ATTTCCACGT
Statistics
Matches: 2414, Mismatches: 840, Indels: 350
0.67 0.23 0.10
Matches are distributed among these distances:
155 3 0.00
156 200 0.08
157 321 0.13
158 780 0.32
159 1060 0.44
160 46 0.02
161 4 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (159 bp):
GTGTTTATGGTGCCTAATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTT
AAGGGATGAACTTTGATTTTAAAAAAATAAGTGCAAATAAAAGCTTTTCATGCGAAACTAAAGCA
TCAATATCATGTATCCTATTGAAGGAGAT
Found at i:356909 original size:42 final size:42
Alignment explanation
Indices: 356854--356972 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
356844 TTCTTCTCTC
* *
356854 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
356896 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
356938 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
356973 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:356913 original size:12 final size:11
Alignment explanation
Indices: 356887--356962 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
356877 TCTATTATCT
*
356887 CTCCTGTCTCTC
1 CTCCTATCTC-C
356899 CTCCTATCATCC
1 CTCCTATC-TCC
356911 CTCCTATCT--
1 CTCCTATCTCC
*
356920 CTACTATCT--
1 CTCCTATCTCC
*
356929 CTCCTGTCTCTC
1 CTCCTATCTC-C
356941 CTCCTATCATCC
1 CTCCTATC-TCC
*
356953 CTCCTCTCTC
1 CTCCTATCTC
356963 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:356914 original size:24 final size:24
Alignment explanation
Indices: 356878--356963 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
356868 CCTCCTCTCT
* *
356878 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
356902 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
356923 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
356944 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
356964 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:356938 original size:18 final size:18
Alignment explanation
Indices: 356869--356939 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
356859 CCTGTCATCC
* *
356869 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
356887 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
356909 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
356929 CTCCTGTCTCT
1 CTCCTGTCTCT
356940 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:359838 original size:475 final size:474
Alignment explanation
Indices: 358585--374951 Score: 19507
Period size: 475 Copynumber: 34.7 Consensus size: 474
358575 GTTTTCATCA
* * * *
358585 GAAGAGCATTACTAAAATCCATTTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTG
1 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTG
* * *
358650 GTGGGAAAAATGCCTTTCTTGGGAAACCAAAACATCAATATTGCGTATCCTAATGAGAAG-ACTA
66 GTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGAAC-A
* * * * * * *
358714 TATTTATGGTGCCAAATCCTGAAAAGAATGAGGATTTGTATGACTATTCGTGTTTGTCTTTTTTA
130 TGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTA
* * * * **
358779 TGAAACAAACTTTGATTCTATCAAAAACGGTGGAAGGAATAGCTTTTCTTGCGACACTGAAGCAT
195 AGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAT
* *
358844 CAATGTCGTGTATCCTATTGAAGGGACTGTGTTTTTGGCTCCCAATCTTG-AAAGAATGGAGATT
260 CAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGG-TCCCAATCTTGAAAAGAATGGAGATT
* *
358908 GTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAA
324 GTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGCAAA
* * * * ** *
358973 TAAAAGATTTCCACGTAAAAG------A--AA-ATCATTTATCCCAATGAG-GAATGTTATTATG
389 GAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAGAATGTGCTTATA
* *
359028 GTACCTAATCTCAAAATGAAT
454 GTGCCTAATCACAAAATGAAT
* * * * * * *
359049 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAGCATAAACTTCATAAAAATTC
1 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTG
* * * ** **
359114 GTGGGAAATATGCTTTTCTTGCAAAACCAAATTATCAATATCACGTATCCTAATGAGAAGAACAT
66 GTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGAACAT
* * *
359179 TTTTATGGTGCCTAATCCTAAAAAGAATAGGGAGGGATTAGTATGAGTACTCATGTTTGTCTTAT
131 GTTTATGGTGCCTAATCCTGAAAAGAAT---G-GGGATTAGTATGAGTATTCATGTTTGTCTTAT
* * * *
359244 TTAAGAGATAAACTTTGATTCTATTAAAAACAGG-GGAAAGAAAAGCTTTTCATGCGACACTAAA
192 TTAAGAGACAAACTTTGATTCTATCAAAAAC-GGTGGAAAGAAAAGCTTTTCTTGCGACACCAAA
* * * * *
359308 GCATCAAGGTCATGTATCCTATTGAAGGAAATGTATTTTTTGCTCCGAATCTTGAAAAGAATGGA
256 GCATCAATGTCATGTATCCTATTGAAGGGAATGT-GTTTTTGGTCCCAATCTTGAAAAGAATGGA
* * * *
359373 GATTGTTATGATAATCGATGCTTGT-TTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAAGG
320 GATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGG
* * *** * *
359437 CAAATAAATGATTTCCACATAAAAGAAAATCATCAATATCATTTCTCCCAATGAG-GAATGTGCT
385 CAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAGAATGTGCT
*
359501 TATAGTGCCTAATCACAAAAAGAAT
450 TATAGTGCCTAATCACAAAATGAAT
* * * *
359526 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACATAGACTTTATAAAAATTT
1 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTG
* * * ** *
359591 GTGGGAAAAACGCTTTTCTTGCAAAAAAAAAAAGCATCAATATCATGTATCCTAATGAGAAGAAC
66 GTGGGAAAAATGCCTTTCTTGC-GAAACCAAAA-CATCAATATCGTGTATCCTAATGAGAAGAAC
* * * ** *
359656 ATTTTTAGGGTGCCTAATCCTAAAAATCATGGGGATTAGTATAAGTATTCATGTTTGTCTTATTT
129 ATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTT
* * * * * * *
359721 AAGAGATAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCTTTTCATGCGGCACTAAAGCT
194 AAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
* *
359786 TCAAGGTCATGTATCCTATTGAACGGAATGT-TTTTATGGCTCCCAATCTTGAAAAGAATGGAGA
259 TCAATGTCATGTATCCTATTGAAGGGAATGTGTTTT-TGG-TCCCAATCTTGAAAAGAATGGAGA
* * * * *
359850 TTGTTACGATAATAGATGATTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCA
322 TTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGCA
* ** * * * *
359915 AAGAAAAAATTTTGATACAAAACAAAATCATCAATATCATTTAACCTAATGAGA-AGTGTGCTTA
387 AAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAGAATGTGCTTA
*
359979 TTGTGCCTAATCACAAAATGAAT
452 TAGTGCCTAATCACAAAATGAAT
*
360002 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGTATGAACTTAGACTTTACAAAAATT-
1 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTG
* * *
360066 GTGAGAAAAATGCCTTTTTTGCAAAACCAAAACATCAATATCGTGTATCCTAATGAGAAG-ACAA
66 GTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGAAC-A
* * * ** *
360130 TGTTTATGGCGCCCAATCCTGAAAAGAATGGGGATTAGTTTGACCATTCATGTTTGTCTTGTTTA
130 TGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTA
* **
360195 AGAGACAAACTTTGATTCCT-TGAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGGTACCAAAGCA
195 AGAGACAAACTTTGATT-CTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
* ** * * * *
360259 TCAATGTCATGTATCCTTTTGAAAAGAAGGTGTTTTTGGTACCAAATCTTGAAAACAATGTAGAT
259 TCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGT-CCCAATCTTGAAAAGAATGGAGAT
* * *
360324 TGTTACGAGAATCGAAGCTTGTCTTATTTAAAGGATGAA-TGTTGATTTTATGGAAAATAGGGCA
323 TGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACT-TTGATTTTATGGAAAATAAGGCA
* * * * * *
360388 AGGAAAAGAATTCGATACAAATGAAAATCATCAATATCATTTATCCTAAAGAGGAGAATGTGCTT
387 AAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA-GAGAATGTGCTT
*
360453 ATAGTGCCTAATCACAAAATGACT
451 ATAGTGCCTAATCACAAAATGAAT
* * *
360477 GAAGATCATTACTAAAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGCCTTTACAAAAATTG
1 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTG
* * ***
360542 GTGGGAAAAATGCCTTTTTTACGAAACCAAAACATCAATATCACATATCCTAATGAGAAG-ACTA
66 GTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGAAC-A
* *
360606 TATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTGT-TTCATGTTTGTCTTATT
130 TGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGA--GTATTCATGTTTGTCTTATT
* * * *
360670 TAAGAGACAAATTTTGATTCCAACAAAAACGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGC
193 TAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC
* * *
360735 ATCAATGTCATGTATCCTATTGCAGGGAATGTGTTTTTGGTACCAAATCTTGAAAACAATGGAGA
258 ATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGT-CCCAATCTTGAAAAGAATGGAGA
* * * *
360800 TTGTTATGAGAATCGATGCTTGTCTTATTTAGGGGATGAACTTTGATTTTAAGGAAAATAGGGCA
322 TTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGCA
* ** * * * *
360865 GAGAAAAGATTTTGATACAAAAGAAAATCGTCAA-ATCATTTATCCTAAAGAGGAGAATCTGCTT
387 AAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA-GAGAATGTGCTT
* *
360929 ATAGTGGCTAATCATAAAATGAAT
451 ATAGTGCCTAATCACAAAATGAAT
* * *
360953 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGACGCACGAACTTAAACTTTACAAAAATTG
1 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTG
* *
361018 GCGTGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGAACAT
66 GTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGAACAT
* *
361083 GTTTATGGTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGTGTATTCATGTTTGTCTTATTTAA
131 GTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAA
* *
361148 GAGAGAAACTTTGATTCTAT-AAACAACGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCAT
196 GAGACAAACTTTGATTCTATCAAA-AACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAT
* * * * **
361212 TAATGTCATGTATCCTATTAAAGAGATTGTGTTTTTGGTACCCAATCTTGAAAAGAAAAGAGATT
260 CAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGT-CCCAATCTTGAAAAGAATGGAGATT
* * * *
361277 GTTACGAGAATC-ATTGCTTATCTTATATAAGGGATGAACTTTTATTTTATGGAAAATAGGGCAA
324 GTTACGAGAATCGA-TGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGCAA
* *
361341 A-AACAGATTTCCATGCAAAAGAAAATCATTAATATCATTTATCCT-ATAGAGGAGAATGTG-TC
388 AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT-GA-GAGAATGTGCT-
*
361403 TATAGTGCCTAATCATAAAATGAAT
450 TATAGTGCCTAATCACAAAATGAAT
* * * * * * *
361428 GAAGATCATTACTAGAATTCATATTTGTCTTATTTGACGCACGAACTTAAACTTTACGAAAATTG
1 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTG
*** * * *
361493 ACAGGAAAAATGCTTTTCTTGTGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAAAACAT
66 GTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGAACAT
*
361558 GTTTATGGTGCCTAATCCTGAAAAGAGA-GGGGATTAGTATGTGTATTCATGTTTGTCTTATTTA
131 GTTTATGGTGCCTAATCCTGAAAAGA-ATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTA
* *
361622 AGAGAGAAACTTTGATTCTAT-AAACAACGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCA
195 AGAGACAAACTTTGATTCTATCAAA-AACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
* * * * * *
361686 TTAATGTCTTGTATCCTATTAAAGAGATTGTGTTTTTGGTACCCAATCTTGGAAAGAATGGAGAT
259 TCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGT-CCCAATCTTGAAAAGAATGGAGAT
* * * *
361751 TGTTACGAGAATC-ATTGCTTATCTTATATAAGGGATGAACTTTTATTTTATGGAAAATAGGGCA
323 TGTTACGAGAATCGA-TGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGCA
* *
361815 AA-AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAAGGGGAGAATGTGCTT
387 AAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCT-AATGAGAGAATGTGCTT
*
361879 ATAGTGCCTAATCATAAAATGAAT
451 ATAGTGCCTAATCACAAAATGAAT
* * * * *
361903 GAAGATCATTACTAGAATCCATGTTTATCACATTTGAGGCTTGAACTTAGATTTTGC-AAAATTA
1 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATT-
* * * * ** * ** *
361967 GGTCGAAAAAAAGCCTTTCTTACGGCACCAAAGCATCAATATCGCATATCCGAATGAGAAG-ACA
65 GGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGAACA
* * *
362031 GTGTTTATGGTGCCTAATCCTGAAAAAAATGGGGATTAGTATGACTATTCATGTTTGTCTTTTTT
130 -TGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTT
* * * * *
362096 AAGAGACAAACTTTGATTCCATCAAAAACGATGGAAGGAAAAGCTTTTCTTACGACACCAAAGCG
194 AAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
* ** * * * *
362161 CCAATGTCACATATCCTATTGATGGGAATGTGTTTTTGGCTCCCAATCATGAAAAGAATGGACAA
259 TCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGG-TCCCAATCTTGAAAAGAATGGAGAT
* * ** * *
362226 TATTAGGAGAATCGATGCTTGTCTTATTTACA-AAATGAACTTTGATTTTATTGAAAATAGGGCA
323 TGTTACGAGAATCGATGCTTGTCTTATTTA-AGGGATGAACTTTGATTTTATGGAAAATAAGGCA
* *
362290 AAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATTATTTATCCTAATGAG-GATCATGTGGT
387 AAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAGA--ATGTGCT
*
362354 TATAGTGCCTAATGACAAAATGAAT
450 TATAGTGCCTAATCACAAAATGAAT
* * * * * *
362379 GAACATCATTGCTAGAATCCATGTTTGTCCCATTTAAGGCAAGAACTTAGAATTTACAAAAATTG
1 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTG
* * * *
362444 GTAGGAAAAATGCCTTTGTTGGGAAACCAAAACATCAATATCATGTATCCTAATGAGAA-AACTA
66 GTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGAAC-A
* * * * *
362508 TGTTCATGGTGCCTAATCCTGAAAACAATGGGGAATAGTAAGAGTATTCAAGTTTGTCTTATTTG
130 TGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTT-
* * * * *
362573 AA-AGATAAATTTTGATTCTATCAAAAATGGTGGAAGGTAAAGCTTTTCTTGCGACACCAAAGCA
194 AAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
** * * *
362637 TCAACATCATATATCCTATT-ATAGGGACTGTATTTTTGGCTCCCAATCTTGAAAAGAATGGAGA
259 TCAATGTCATGTATCCTATTGA-AGGGAATGTGTTTTTGG-TCCCAATCTTGAAAAGAATGGAGA
* *
362701 TTGTTACGAGAATCGATGCTTGTCTTATTTGAGGGATGAACTTTGATTTTAAGGAAAATAAGGCA
322 TTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGCA
* * * * *
362766 AATAAAAGATTTCCACGTAAAAGAAAATCATCAATATCATTTCTCCCAATGAG-GAATGTGCTTA
387 AAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAGAATGTGCTTA
* *
362830 TGGTGCCTAATCTCAAAATGAAT
452 TAGTGCCTAATCACAAAATGAAT
* * * *** *
362853 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCATGAACATAAACTTCGTAAAAATTT
1 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTG
* * * * **
362918 GTGGGAAATATGCTTTTCTTGCGAAACCAAAGCATCGATATCACGTATCCTAATGAGAAGAACAT
66 GTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGAACAT
* * * * *
362983 TTTTATGGTGCTTAATCCTAAAAAGAATAGGGATTAGTATGAGTACTCATGTTTGTCTTATTTAA
131 GTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAA
* * * * *
363048 GAGACAAACATTGATTCTGTCAAAAACGG-GAGAAAGAAAAGCTTTCCATGCGACACTAAAGCAT
196 GAGACAAACTTTGATTCTATCAAAAACGGTG-GAAAGAAAAGCTTTTCTTGCGACACCAAAGCAT
* * *
363112 CAAGGTCATGTATCCTACTGAAGGGAATGTGTTTTTTGCTCCCAATCTTGAAAAGAATGGAGATT
260 CAATGTCATGTATCCTATTGAAGGGAATGTG-TTTTTGGTCCCAATCTTGAAAAGAATGGAGATT
* * * * *
363177 GTTATGAGAATCGATTCTTGTCTTATTTAAGGGATGAACATTGATTTTAAGAAAAATAAGGCAAA
324 GTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGCAAA
* * *** ** *
363242 TAAATG-TTTCCACATAAAAGAAAATCATCAATATCATTTCCCCCAATGAG-GAATGTGCTTATA
389 GAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAGAATGTGCTTATA
363305 GTGCCTAATCACAAAATGAAT
454 GTGCCTAATCACAAAATGAAT
* * * * *
363326 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGGACATAGATTTTATAAAAATTT
1 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTG
* * *
363391 GTGGGAAAAATGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAACAT
66 GTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGAACAT
* * * ** *
363456 CTTTACGGTGCCTAATCCTAAAAATCATGGGGATTAGTATAAGTATTCATGTTTGTCTTATTTAA
131 GTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAA
* * * *
363521 GAGATAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCATGCGGCACTAAAGCATC
196 GAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
* * * * *
363586 AAGGTCATGTATTCTATTAAAGGGAATGTGTTTGTGGCTCCCAATCTTGAAAAGACTGGAGATTG
261 AATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGG-TCCCAATCTTGAAAAGAATGGAGATTG
* * * *
363651 TTACGATAATCGA----TG-CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAAGCAAAT
325 TTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAG
* * * * * *
363711 AAAAGATTTCCACGTAAAAGAAAATCATCAATATCATTTCTCCCATTGAG-GAATGTGCTTATGG
390 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAGAATGTGCTTATAG
*
363775 TGCCTAATCTCAAAATGAAT
455 TGCCTAATCACAAAATGAAT
363795 GAAGATCATTACTAGAA-CCTATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATT
1 GAAGATCATTACTAGAATCC-ATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATT
* * * *
363859 -GTGGGAAAAATGCCTTTTTTGCAAAACCAAAACATCAAAATCATGTATCCTAATGAGAAG-ACA
65 GGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGAAC-
** * ** *
363922 ATGTTTATGGCACCTAATCCTGAAAAGAATGGGGATTAGTTTGACCATTCATGTTTGTCTTGTTT
129 ATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTT
* ** *
363987 AAGAGACAAACTTTGATTCCT-TGAAAAGGGGTGGAAAGAAAAGCTTTTCTTGCGGCACCAAAGC
194 AAGAGACAAACTTTGATT-CTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC
** * *
364051 ATCAATGTCATGTATCCTA-TG-AGGAGAATGTGTTTTTGGTACAAAATCTTGGAAAGAATGTAG
258 ATCAATGTCATGTATCCTATTGAAGG-GAATGTGTTTTTGGT-CCCAATCTTGAAAAGAATGGAG
* * *
364114 ATTGTTAAGAGAATCGATGCTTGTCTTATTTGAA-GGATGAACTTTGATTTTATGAAAAATAGGG
321 ATTGTTACGAGAATCGATGCTTGTCTTATTT-AAGGGATGAACTTTGATTTTATGGAAAATAAGG
* * * * *
364178 CAAGGAAAAGATTTCGATG-AAACAAAAAATCATCAATATCATTTGTCCTAAGGAGGAGAATGTG
385 CAAAGAAAAGATTTCCATGCAAA-AGAAAATCATCAATATCATTTATCCTAATGA-GAGAATGTG
*
364242 CTTATAGTGTCTAATCACAAAATGAAT
448 CTTATAGTGCCTAATCACAAAATGAAT
* * **
364269 GAAAATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTG
1 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTG
* * *
364334 GTGGGAAAAATGCCTTTCTTGCGAAACCAAAATATCAAGATCGTGTATCCTAATGAGAAGAACAA
66 GTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGAACAT
* * *
364399 GTTTATGGTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGTGTATTCTTGTTTGTCTTATTTAA
131 GTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAA
* *
364464 GAGAGAAACTTTGATTCTAT-AAACAACGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCAT
196 GAGACAAACTTTGATTCTATCAAA-AACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAT
* * * * *
364528 TAATGTCATGTATCCTATTAAAGAGATTGTGTTTTTGGTACCCAATCTTGGAAAGAATGGAGATT
260 CAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGT-CCCAATCTTGAAAAGAATGGAGATT
* * * * *
364593 GTTATGAGAATC-ATTGCTTATCTTATATAAGGGATGAACTTTTATTTTATGGAAAATAGGGCAA
324 GTTACGAGAATCGA-TGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGCAA
* * *
364657 A-AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTCATCCTAAAGGGGAGAATGTGCTTA
388 AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCT-AATGAGAGAATGTGCTTA
*
364721 TAGTGCCTAATCATAAAATGAAT
452 TAGTGCCTAATCACAAAATGAAT
* * * * *
364744 GAAGAT-ATTACTAGAATCCATGTTTATCTCATTTGAGGCTTGAACTTAGATTTTGC-GAAATTA
1 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATT-
* * * * ** **
364807 GGTCGAAAAAAAGCCTTTCTTACGGCACCAAAACATCAATATCGCATATCCTAATGAGAAG-ACA
65 GGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGAACA
*
364871 GTGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGTGTATTCATGTTTGTCTTATTT
130 -TGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTT
* *
364936 AAGAGAGAAACTTTGATTCTAT-AAACAACGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGC
194 AAGAGACAAACTTTGATTCTATCAAA-AACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC
* * * * * *
365000 ATTAATGTCTTGTATCCTATTAAAGAGATTGTGTTTTTGGTACCCAATCTTGGAAAGAATGGAGA
258 ATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGT-CCCAATCTTGAAAAGAATGGAGA
* * * *
365065 TTGTTACGAGAATC-ATTGCTTATCTTATATAAGAGATGAACTTT--TTTTATGGAAAATAGGGC
322 TTGTTACGAGAATCGA-TGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGC
* *
365127 AAA-AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAAGGGGAGAATGTGCT
386 AAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCT-AATGAGAGAATGTGCT
*
365191 TATAGTGCCTAATCATAAAATGAAT
450 TATAGTGCCTAATCACAAAATGAAT
* * * * *
365216 GAAGATCATTACTAGAATCCATGTTTATCTCATTTGAGGCTTGAACTTAGATTTTGCAAAATTTG
1 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTG
* * * * ** ** *
365281 GTCGAAAAAAAGCCTTTCTTACGGCACCAAAACATCAATATCGCATATCGTAATGAGAAG-ACAG
66 GTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGAACA-
* * * *
365345 TGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTTATGTTTGTCTTTTTTA
130 TGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTA
* * * * **
365410 AGAGACAAACTTTGATTCCATCAAAAACGATGGAAGGAAAAGCTTTTCTTGTGACACCAAAGCGC
195 AGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAT
* * * *
365475 CAATGTCATGTATCCTATTGATGGGAATGTGTTTTTGGCTCCCAATCATGAAAAGAATGGACACT
260 CAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGG-TCCCAATCTTGAAAAGAATGGAGATT
* * * * * *
365540 ATTAGGAGAATCGATGCTTGTCTTATTTACGGAATGAACTTTGATTTTATAGAAAATAGGGCAAA
324 GTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGCAAA
* * * *
365605 GAAAAGATTTTCATGCAAAAGAAAATCATAAATACCATTTATCCTAATGAGGAGAATGTGGTTAT
389 GAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA-GAGAATGTGCTTAT
*
365670 AGTGCCTAATGACAAAATGAAT
453 AGTGCCTAATCACAAAATGAAT
* * * *
365692 GAACATCATTGCTAGAATCCATGTTTGTCCCATTTGAGGCAAGAACTTAGACTTTACAAAAATTG
1 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTG
* * * * *
365757 GTAGGAAAAATGCCTTTGTTGTGAAACAAAAACATCAATATCATGTATCCTAATGAGAA-AACTA
66 GTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGAAC-A
* * * * *
365821 TGTTTATGGTGCCTAATCCTGAAAACAATGGGGAATAGTAAGAGTATTCAAGTTTGTCTTATTTG
130 TGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTA
* * * * * * *
365886 AGAGATAAATTTTGATTCTATCAAAAATGGTAGAAGGTAAAGCTTTTCTTACGACACCAAAGCAT
195 AGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAT
* * * *
365951 CAATGTCATATATCCTATT-ATAGGGACTGTATTTTTGGCTCCCAATCTTGAAAAGAGTGGAGAT
260 CAATGTCATGTATCCTATTGA-AGGGAATGTGTTTTTGG-TCCCAATCTTGAAAAGAATGGAGAT
* * *
366015 TGTGACGAGAATCGATGCTTGTCTTATTTGAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAA
323 TGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGCAA
* * * * *
366080 ATAAAAGATTTCCACGTAAAAGAAAATCATCAATATCATTTCTCCCAATGAG-GAATGTGCTTAT
388 AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAGAATGTGCTTAT
* *
366144 GGTGCCTAATCTCAAAATGAAT
453 AGTGCCTAATCACAAAATGAAT
* * * * * *
366166 GAAGATCATTACTAGAATCCATGTTTGTCCCATTTGAGGCATGAACATAAACTTCATAAAAATTA
1 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTG
* * * * **
366231 GTGGGAAATATGCTTTTCTTGCGAAACCAAAGCATCGATATCACGTATCCTAATGAGAAGAACAT
66 GTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGAACAT
* * * * *
366296 TTTTATGGTGCTTAATCCTAAAAAGAATAGGGATTAGTATGAGTACTCATGTTTGTCTTATTTAA
131 GTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAA
* * * ** *
366361 GAGACAAACATTGATTCTATCAAAAACGGTAGAAAGAAAAGCTTTTCATGCGGTACTAAAGCATC
196 GAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
* * *
366426 AAGGCCATGTATCCTATTGAAGGGAATGTGTTTTTTGCTCCCAATCTTGAAAAGAATGGAGATTG
261 AATGTCATGTATCCTATTGAAGGGAATGTG-TTTTTGGTCCCAATCTTGAAAAGAATGGAGATTG
* * * *
366491 TTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAAGGCAAAT
325 TTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAG
* *** * * *
366556 AAATGATTTCCACATAAAAGAAAATCATCAATATCATTTCTCCCAATGAG-GAATGTGCTTATGG
390 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAGAATGTGCTTATAG
* *
366620 TGCCTAATCTCAAAATGGAT
455 TGCCTAATCACAAAATGAAT
* * * * * *
366640 GAAGATCATTACTAGAATCCATGTTTGTCCCATTTGAGGCATGAACATAAACTTCATAAAAATTA
1 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTG
* * * * **
366705 GTGGGAAATATGCTTTTCTTGCGAAACCAAAGCATCGATATCACGTATCCTAATGAGAAGAACAT
66 GTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGAACAT
* * * * *
366770 TTTTATGGTGCTTAATCCTAAAAAGAATAGGGATTAGTATGAGTACTCATGTTTGTCTTATTTAA
131 GTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAA
* * ** *
366835 GAGACAAACATTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCATGCGGTACTAAAGCATC
196 GAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
* * *
366900 AAGGCCATGTATCCTATTGAAGGGAATGTGTTTTTTGCTCCCAATCTTGAAAAGAATGGAGATTG
261 AATGTCATGTATCCTATTGAAGGGAATGTG-TTTTTGGTCCCAATCTTGAAAAGAATGGAGATTG
* * * *
366965 TTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAAGGCAAAT
325 TTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAG
* *** ** *
367030 AAATGATTTCCACATAAAAGAAAATCATCAATATCATTTCCCCCAATGAG-GAATGTGCTTATAG
390 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAGAATGTGCTTATAG
367094 TGCCTAATCACAAAATGAAT
455 TGCCTAATCACAAAATGAAT
* * * * *
367114 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGGACATAGATTTTATAAAAATTT
1 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTG
* * *
367179 GTGGGAAAAATGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAACAT
66 GTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGAACAT
* * * ** *
367244 CTTTACGGTGCCTAATCCTAAAAATCATGGGGATTAGTATAAGTATTCATGTTTGTCTTATTTAA
131 GTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAA
* * * *
367309 GAGATAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCATGCGGCACTAAAGCATC
196 GAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
* * * * *
367374 AAGGTCATGTATTCTATTAAAGGGAATGTGTTTGTGGCTCCCAATCTTGAAAAGACTGGAGATTG
261 AATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGG-TCCCAATCTTGAAAAGAATGGAGATTG
* * * *
367439 TTACGATAATCGA----TG-CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAAGCAAAT
325 TTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAG
* * * * * *
367499 AAAAGATTTCCACGTAAAAGAAAATCATCAATATCATTTCTCCCATTGAG-GAATGTGCTTATGG
390 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAGAATGTGCTTATAG
*
367563 TGCCTAATCTCAAAATGAAT
455 TGCCTAATCACAAAATGAAT
367583 GAAGATCATTACTAGAA-CCTATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATT
1 GAAGATCATTACTAGAATCC-ATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATT
* * * *
367647 -GTGGGAAAAATGCCTTTTTTGCAAAACCAAAACATCAAAATCATGTATCCTAATGAGAAG-ACA
65 GGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGAAC-
** * ** *
367710 ATGTTTATGGCACCTAATCCTGAAAAGAATGGGGATTAGTTTGACCATTCATGTTTGTCTTGTTT
129 ATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTT
* ** *
367775 AAGAGACAAACTTTGATTCCT-TGAAAAGGGGTGGAAAGAAAAGCTTTTCTTGCGGCACCAAAGC
194 AAGAGACAAACTTTGATT-CTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC
** * *
367839 ATCAATGTCATGTATCCTA-TG-AGGAGAATGTGTTTTTGGTACAAAATCTTGGAAAGAATGTAG
258 ATCAATGTCATGTATCCTATTGAAGG-GAATGTGTTTTTGGT-CCCAATCTTGAAAAGAATGGAG
* * *
367902 ATTGTTAAGAGAATCGATGCTTGTCTTATTTGAA-GGATGAACTTTGATTTTATGAAAAATAGGG
321 ATTGTTACGAGAATCGATGCTTGTCTTATTT-AAGGGATGAACTTTGATTTTATGGAAAATAAGG
* * * * *
367966 CAAGGAAAAGATTTCGATG-AAACAAAAAATCATCAATATCATTTGTCCTAAGGAGGAGAATGTG
385 CAAAGAAAAGATTTCCATGCAAA-AGAAAATCATCAATATCATTTATCCTAATGA-GAGAATGTG
*
368030 CTTATAGTGTCTAATCACAAAATGAAT
448 CTTATAGTGCCTAATCACAAAATGAAT
* * * *
368057 GAAAATCATTAGTAGAATCCATGTTTGTCTCATTTGACGCATGAACTTAAACTTTACAAAAATTG
1 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTG
* * * * *
368122 GTGGGAAAAATGCCTTTCTTGCAAAAGCAAAACATCAATATCATTTATCCTAAAGAGAAGAACAT
66 GTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGAACAT
* *** * ** *
368187 TTTTATGGTGCCTAATCCTGAAAAGAAAATGGATTAGTTTGTTTATTCAAGTTTGTCTTATTTAA
131 GTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAA
* * * * *
368252 GAGATAAACTTTGATTCTGTGAAAAACGGTGGAAAGAAAAGCTTTCCTTGCGACACCAAACCATC
196 GAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
* * * * * *
368317 TATGTCATGTATCCTATTGACGAGAATGTGTTTTTGGTACCAAATCTTGGAAAGACTGGAGATTG
261 AATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGT-CCCAATCTTGAAAAGAATGGAGATTG
* * * * *
368382 TTACGAGAATCGATACTTGTCTTATTTAGGGGTTGAACTTTTATTTTACGGAAAATAAGGCAAAG
325 TTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAG
* *
368447 -AAAGAATTTTCATGCAAAAGAAAATCATCAATATCATTTAT-CTAGTGAGAAGAATGTGCTTAT
390 AAAAG-ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAG-AGAATGTGCTTAT
* *
368510 AGCGCCTAATCAAAAAATGAAT
453 AGTGCCTAATCACAAAATGAAT
* * * * * **
368532 GACGAACATTACTAGAATCCATGTTTGTCTTACTTGAGGCTTGAACTTAGACTTTACAAAACCTG
1 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTG
* * * * * *
368597 GTGGG-AAAATGCCTTTCTTGTGAAACCAAAACATCAATGTCGCGTCTCCTAAAGAGAAG-GCTA
66 GTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGAAC-A
* * **
368660 TATTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGCT-TGACCATTCATGTTTGTCTTATTT
130 TGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAG-TATGAGTATTCATGTTTGTCTTATTT
** * * *
368724 AAGAGACAAACTTTGATTGAATCAAAAACGTTAGAAA-AAATAGCTTTTCTTACGACACCAAAGC
194 AAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAA-AGCTTTTCTTGCGACACCAAAGC
* * * *
368788 ATCAATGTCATGTATTCCTATTGATGGGAATGTGCTTTTGGTTCCAAATCTTGAAAGGAATGGAG
258 ATCAATGTCATGTA-TCCTATTGAAGGGAATGTGTTTTTGG-TCCCAATCTTGAAAAGAATGGAG
* * * * *
368853 ACTGTTACGAGAATAGATGTTTGTCTTATTTAAGGGTTGAACTTTGATTTTATGAAAAATAAGGG
321 ATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAA-GG
* * *
368918 CAAAGAAAAGATTTCGAAGCAAAA-AAAATCATCAATATCATTTATCCTAACGAGGAGAATGTGC
385 CAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA-GAGAATGTGC
*
368982 TTATAGTGCCTAATCACTAAATGAAT
449 TTATAGTGCCTAATCACAAAATGAAT
* * * * *
369008 AAAGATCATTACTAGAATCCATGTTAGTCTGATTTGAGGTATGAACTTAGACTTTACAAAAATTA
1 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTG
* ** * * * ** *
369073 GTAGGAAAAATGCCAATCTTGTGAAACGAAAACATCAATATTGCATATCCTAATGAGAAGACCAT
66 GTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGAACAT
* *
369138 GTTTATGGTGCCTAATCCCGAAAAGAATGTGGATTAGTATG-GCTATTCATGGTTT-TCTTATTT
131 GTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAG-TATTCAT-GTTTGTCTTATTT
* * * * *
369201 AAGAGACAAACTTTGATTCTGTGAAAAACGGTGGAAAGAAAAGCTTTCCTTACGACACCAAACCA
194 AAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
* * * * *
369266 TCAATGTCATGTATCCTATTGAAGAGAAAGTGTTTTTGGTACCAAATCTTGGAAAGAATGGAGAC
259 TCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGT-CCCAATCTTGAAAAGAATGGAGAT
* ** * ** *
369331 TGTTACAAGAATCGATGCTTGTCTTATTTTGGGGTTGAACTATT-ATTCCAGGGAAAATAAGGC-
323 TGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACT-TTGATTTTATGGAAAATAAGGCA
* * *
369394 AAG----GATTTTCAAGCAAAAGAAAATCATCAATATCATTTATCCTAGTGAGGAGAATGTGCTT
387 AAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA-GAGAATGTGCTT
**
369455 ATAGCACCTAATCACAAAATGAAT
451 ATAGTGCCTAATCACAAAATGAAT
* * * * * * *
369479 GACGATCATTGCTGGAATCCATGTTTGTCTTACTTGAGGCAAGAACTTAGACTTTACAAAAATCG
1 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTG
* * * * * * *
369544 GTGAGATAAATGCCTTTCTGGTGAAACCAAAACATCAATATCGTATCTCCTAAAGAGAAG-ACTA
66 GTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGAAC-A
* * * **
369608 TATTTATGGTGCCTAATCCTGAAAACAATGGGGATTAGTTTGACCATTCATGTTTGTCTTATTTA
130 TGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTA
** * *
369673 AGAGACAAACTTTGATTCCGTAAAAAACGGTGGAAA-AATAGCTTTTCTTGCGACACCAAAGCAT
195 AGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAT
* ** * *
369737 CAATGTCATGTATCCTATTGATGGGAATGTGTTTTTGGTTCCCAATCCGGAAAAGAATGAAGACT
260 CAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGG-TCCCAATCTTGAAAAGAATGGAGATT
* * *
369802 GTTA-GAGAATAGATGCTTATCTTATTTAAAGGATGAACTTTGATTTTATGGAAAATAAGGGCAA
324 GTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAA-GGCAA
* *
369866 AGAAAAGATTTCCAAGCAAAA-AAAATCA-CAAATATCATTTATCCTAATGAGGAGAACGTGCTT
388 AGAAAAGATTTCCATGCAAAAGAAAATCATC-AATATCATTTATCCTAATGA-GAGAATGTGCTT
*
369929 ATGGTGCCTAATCACAAAATGAAT
451 ATAGTGCCTAATCACAAAATGAAT
** * * * * * *
369953 GAAGAAAATTTCTAGAATTCATGTTAGTCTCATTTGATGCATGAATTTAGACTTTACAAAAATTA
1 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTG
* * * * *
370018 GTGGGAAAAATGCCATTCTGGCAAAACCAAAACATCAATATCGTGTATCCTAATAAGAAGACCAT
66 GTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGAACAT
* * * *
370083 GTTTATAGTGCCTAATCCTTAAAAGAATGTGGATTAGTATG-GCTATTCATGTTTATCTTATTTA
131 GTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAG-TATTCATGTTTGTCTTATTTA
* * * *
370147 AGAGACAAACTTTGACTCTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGCGGCACTAAAGCAT
195 AGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAT
* * * *
370212 CAATGTCATGTATCCTATT-AATGGGAATG-GGTTTTGGTACGCAATCTTGAAACGAATGCAGAT
260 CAATGTCATGTATCCTATTGAA-GGGAATGTGTTTTTGGT-CCCAATCTTGAAAAGAATGGAGAT
* *
370275 TGTTACAAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGCTTTTATGGAAAATAAGGCAA
323 TGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGCAA
* * * * * *
370340 AGAAAAGATTTTCATGCAAAAGAAAACCAACAATATCATTTGTCCAAATAAGGAGAATGTGCTTA
388 AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA-GAGAATGTGCTTA
370405 TAGTGCCTAATCACAAAATGAAT
452 TAGTGCCTAATCACAAAATGAAT
* * * *
370428 GCAA-ATCATTACTAGAGTCCACGTTTGTTTCATTTGAGGCACGAACTTAGACTTTACAAAAATT
1 G-AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATT
* * * * **
370492 AGTGAGAAAAATGCTTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAGAAGATTA
65 GGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGAACA
* ** *
370557 TGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACCATTCAAGTTTGTCTTATTTA
130 TGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTA
** * *
370622 AGAGACAAACTTTGATTCCGTAAAAAATGGTGGAAA-AAATAGCTTTTCTTGCGACACCAAAGCA
195 AGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAA-AGCTTTTCTTGCGACACCAAAGCA
* * *
370686 TCAATGTCATGTATCCTATTGATGGGAATGTGGTTTTGGTTCCCAATCTTGAAAAGAATGGAGAC
259 TCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGG-TCCCAATCTTGAAAAGAATGGAGAT
* * *
370751 TGTTACGAGAATAGATGCTTGTCTTATTTAAGGGATGAGCTTTGATTCTATGGAAAATAAGGGCA
323 TGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAA-GGCA
* * * * * * *
370816 AAGAAAAGATTTCGAAGCAAAAAAAAAATCATCAATATCACTTATCCTAATAAGGAGTATGTGCA
387 AAGAAAAGATTTCCATGC-AAAAGAAAATCATCAATATCATTTATCCTAATGA-GAGAATGTGCT
*
370881 TATAGTGCCTAATCACTAAATGAAT
450 TATAGTGCCTAATCACAAAATGAAT
* * *
370906 GAAGATCATTACTAGAATCCATGTTTATCTCATTTGAGGCACGAACTTAGACTTTACAATAATTG
1 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTG
* *
370971 GTAGGAAAAATGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAG-ACTA
66 GTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGAAC-A
* * * *
371035 TGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGAGTACTCTTGTTTGTCTTATTTG
130 TGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTA
* *
371100 AGAGACAAACTTTGATTCTATAAAAAACGGTGGAAAGAAAAGCCTTTCTTGTC-ACACCAAAGCA
195 AGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTG-CGACACCAAAGCA
** * * * * ** * *
371164 TCAATGTCATGTATCCTAACGAAGGAAATGTGTTTTAGGTTCCCAATCCTAAAAACTATAGAGAG
259 TCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGG-TCCCAATCTTGAAAAGAATGGAGAT
* * * * * * *
371229 TATTACGAGAATCAATGCTTGTCTTATTCAAGGGATGGACTTTGATTTTGTGAAAAATAGGGCAA
323 TGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGCAA
371294 AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTA
388 AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA-GAGAATGTGCTTA
*
371359 TAGTG-CTGATCACAAAATGAAT
452 TAGTGCCTAATCACAAAATGAAT
**
371381 GAAGATCATTACTAGAATCCACATTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTG
1 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTG
* * * ** *
371446 GTGGGAAAAATGCTTTTCTTAC-AAATCCAAAATATCAATATCGCATATCCTAATGGGAAG-ACT
66 GTGGGAAAAATGCCTTTCTTGCGAAA-CCAAAACATCAATATCGTGTATCCTAATGAGAAGAAC-
* * * * *
371509 AAGTTTATGGTTCCTAATCCTGAAAAGAGTGGGGATTAGTTTGACTATTCATGTTTGTCTTATCT
129 ATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTAT-T
* * * * * *
371574 GAA-AGACAAACTTTGATTCCATAAAAAACGGTGGGAAGAAAATCTTTTCTTGCAACACCAAAGC
193 TAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC
* * ** * **
371638 CTTAATGTCATGTATCCTATTGAATAGAATGTGTTTTTGGTACCCAATATTGGGAAGAATGGAGA
258 ATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGT-CCCAATCTTGAAAAGAATGGAGA
* *
371703 TTGTTACGAGAATCGATGCTTGTCTAATTTAAGGGATGAACTTTTATTTTATGGAAAA-AAGGCA
322 TTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGCA
* * * ** *
371767 AAGAAAAGATTTCCGTGCCAAAGAAAATCGTCAATATCATTTATCCTAGCGAGGGGAATGTGCTT
387 AAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA-GAGAATGTGCTT
*
371832 ATAATGCCTAATCACAAAATGAAT
451 ATAGTGCCTAATCACAAAATGAAT
* * * ** *
371856 GACGATCATTACTAGAATCCATATTTGTCTCATTTGATGCACAAACTTAAACTTTACAAAAATTG
1 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTG
* *
371921 GTGGGAAAAATGCCTTTCTTGCAAAACCAAAACATCAATATCGTATATCCTAATGAGAAGAACAT
66 GTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGAACAT
* *
371986 GTTTATGGTGCCTAATCCTGAAAAGAATGGGGACTAG--TGTGTATTCATGTTTGTC---TTTAA
131 GTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAA
* * ** * * * ** * ** * * *** *
372046 -AGAGAAGCTTTTCTTGC-AACACCAAA-GCTTCAATG--TCGCGTTTCCTATTA-A--AGAG-A
196 GAGACAAACTTTGATT-CTATCA-AAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
* * ** * ** *** * *
372102 -C-A--T--TGT-T--T-TT----GG-CTCTCAATCTT-G--AAAAGAATG---T------AGAC
259 TCAATGTCATGTATCCTATTGAAGGGAATGT-GTTTTTGGTCCCAATCTTGAAAAGAATGGAGAT
* *
372140 TGTTACGAGAATAGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATAGAAAATAAAGGCA
323 TGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAAT-AAGGCA
* * *
372205 AAGAAAAGATTTCCAAGC-AAA-AAAATCATCAATTTTATTTATCCTAATGAGGAGAATGTGCTT
387 AAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA-GAGAATGTGCTT
372268 ATAGTGCCTAATCACAAAATGAAT
451 ATAGTGCCTAATCACAAAATGAAT
* * * * * *
372292 GAAGATCAGTACTAGTATGCATGTTTGTCTCATTTGATGCACGAACTTAAACTTTACAAAAATTG
1 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTG
* * *
372357 GTAGGAAAAATGCCTTTCTTGTGAAA-CAAAACGTC-A-A-----TA---T--T-----G----T
66 GTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGAACAT
* * * * *
372400 GTTTATGGTGCCTAATCCTGAGAAGAATGGGGACTAGTATGTGTATTCATATTTGTC-T-TTAAA
131 GTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAA
* * * * *
372463 GAGAGAAACTTTGATTCTATCAAAAACAGT-GAAAAAAAAGCTTTCCTTGTGACACCAAAGCATC
196 GAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
* * * ** *
372527 AATGCCATGTATCCTTTTAAAGAAAATGTGTTTTTGGTTCCCAATCTTGGAAAGAATGGAGATTG
261 AATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGG-TCCCAATCTTGAAAAGAATGGAGATTG
* * *
372592 TTATGAGAATCGATGCTTG-CTTTATTTAAGGGATGAACTTTTATTTTATGCAAAATAAGGCAAA
325 TTACGAGAATCGATGCTTGTC-TTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGCAAA
*
372656 GAAAAGATTTCCATGCAAAA-AAAATCATCAATATCATTTATCCTAGTGAGGAGAATGTGCTTAT
389 GAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA-GAGAATGTGCTTAT
372720 AGTGCCTAATCACAAAATGAAT
453 AGTGCCTAATCACAAAATGAAT
* * * * *
372742 GACA-ACCATTACTTGAATCCATGTTTGTCTCTTTTAAGGCATGAACTTAGACTTTAAAAAAATT
1 GA-AGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATT
* * *
372806 GGTGGGAAAAATG-CTGTTCTTGCGAAACCAAAACATTAATATTGCT-TATCCTAAAGAGAAG-A
65 GGTGGGAAAAATGCCT-TTCTTGCGAAACCAAAACATCAATATCG-TGTATCCTAATGAGAAGAA
* * * * * * * *
372868 CTATATTTATGCTACCTAAT-TTGGAAAAGAATGAGGATTAGTTTGACTATTCAAGTTTGTCTTA
128 C-ATGTTTATGGTGCCTAATCCT-GAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTA
* * * * *
372932 TTTAAGAGACAAACTTTGATTCCATAAAAAACGG-GAGAAAGAATAGTTTTTCTTGCAACACCAA
191 TTTAAGAGACAAACTTTGATTCTATCAAAAACGGTG-GAAAGAAAAGCTTTTCTTGCGACACCAA
* *
372996 AGCATCAATGTCATGTATCCTATTGATGGGAATTTGTTTTT-GTCCCCAATCTTGAAAAGAATGG
255 AGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGT-CCCAATCTTGAAAAGAATGG
*
373060 AGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAG
319 AGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAA-
* * *
373125 GGCAAAGAAAAGATTTCCAAGCAAAAAAAAATCATCAATATCATTTATCCTGATGAGAAGAATGT
383 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAG-AGAATGT
*
373190 GCTTATAGTGACTAATCACAAAATGAAT
447 GCTTATAGTGCCTAATCACAAAATGAAT
* * * * *
373218 GAAGATCATTTCTAGAATCCATGTTAGTCTGATTTGAGGCACGAACTTAGACTTTACAAAAATTA
1 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTG
* * *
373283 GTGGG-AAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAACGAGATG-ACTA
66 GTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGAAC-A
*
373346 TGTTTATGGTGCCTAATCCTGAAAAGAAGGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTA
130 TGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTA
* * * *
373411 GGAGACAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTACAACACCAAAGCAT
195 AGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAT
*
373476 CAATGTCATGTATCCTATTTTGAAGGGAAAGTGTTTTTGGCTCCCAATCTTGAAAAGAATGGAGA
260 CAATGTCATGTATCCTA--TTGAAGGGAATGTGTTTTTGG-TCCCAATCTTGAAAAGAATGGAGA
* * * *
373541 TTGTTACGAGAATCAATGCTTGTCTTATTTAAAGGATGAACTTTGATTTTTTGGAAAAAAAGGCA
322 TTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGCA
* * * * *
373606 AAGAAAAGTTTTCCACGCAAAAGAAAATCATCAATATTATTTGTCCTAATGAG-GAATTTGCTTA
387 AAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAGAATGTGCTTA
*
373670 TGGTGCCTAATCACAAAATGAAT
452 TAGTGCCTAATCACAAAATGAAT
** * *
373693 GAAGATCATTA-TAGAATCCATGTTTGTCTCATTTGAGGCACAAACATAGACTTTACAATAATTG
1 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTG
* ** * **
373757 GTGGGAAAAGTGCCTTTCTTGTAAAACCAAAGCATCAATATCGTGTATCCTAAACAGAAGAACAT
66 GTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGAACAT
* * * * *
373822 GTTTATGATGCCTAATCCTGAAAAGAATGGGCATTAGTATGACTATTCGTGCTTGTCTTATTTAA
131 GTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAA
* * * * * * *
373887 GAGACAAACTTTTATTCTATCAAAAACAGTTGAAAGAAAAGCCTTTCTTGTGACACCAAAGCTTT
196 GAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
* * ** * * * * * * ** * *
373952 AATGTCATATATCTTAAAGAAGGAAATG-CTTTTAGATTCCCAATCCTAAAAACTATGGAGAGTA
261 AATGTCATGTATCCTATTGAAGGGAATGTGTTTTTG-GTCCCAATCTTGAAAAGAATGGAGATTG
* * * * * * *
374016 TTACAAGAATCAAGGCTTGTCTTATTCAAGGGATGAACTTTGATTTTGTGAAAAATAGGGCAAAG
325 TTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAG
*
374081 AAAAGATTTCCATGCAAAAGAAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGCTTATA
390 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA-GAGAATGTGCTTATA
*
374146 GTGCCCAATCACAAAATGAAT
454 GTGCCTAATCACAAAATGAAT
* *
374167 GAAGATCATTACTAGAATCCACGCTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTG
1 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTG
* * ** *
374232 GTGGGAAAAATGCCTTT-TTCGCGAAACCAAAACATCAATGTCGCGCCTCCTAAAGAGAAG-ACT
66 GTGGGAAAAATGCCTTTCTT-GCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGAAC-
* * * * * * * *
374295 ATATTTATGATGCCTAAT-CTAGAAAAGAGTGAGGAATAGTTTGACTATTCATTTTTGTCTTATT
129 ATGTTTATGGTGCCTAATCCT-GAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATT
* * *
374359 TAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAAGAATAGCTTTTCTTGCGACACCAAAGC
193 TAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC
* *
374424 ATCAATGTCATGTATCCTATTG-ATGGAATGTGTTTTTGGTTCCCAATCTTGAAATGAATGGAGA
258 ATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGG-TCCCAATCTTGAAAAGAATGGAGA
*
374488 TTGTTACGAGAATAGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAAGGC
322 TTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAAT-AAGGC
* *
374553 AAAGAAAAGATTTCCAAGC-AAA-AAAATCATCAATATCATTTATCCTAACGAGGAGAATGTGCT
386 AAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA-GAGAATGTGCT
*
374616 TATAGTGCCCAATCACAAAATGAAT
450 TATAGTGCCTAATCACAAAATGAAT
* * * * * *
374641 GAAGATCATTACTAGAATCAATGTTAGTCTCGTTTGAGGCACGGACTTAGACTTTACAAAAATTA
1 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTG
* * * * ** * *
374706 GTGGG-AAAATGCCATTT-TTGTGAAATCGAAACATCAGTATCGCATATCCTAATAAGAAGACCA
66 GTGGGAAAAATGCC-TTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGAACA
** * * *
374769 TGTTTACAGTGCCTAATCCTGAAAAGAATGTGGATTAGAATG-GCTATTCATGTTTGTTTTATTT
130 TGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAG-TATTCATGTTTGTCTTATTT
* * * * *
374833 AAGAGACAAACATTGATTCTATCGAAAACGGTGGAAAGAAAAGCTTTTCCTACGACACCAAAACA
194 AAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
*
374898 TCAATGTCATGTATCCTATTGATA-GGAATGTGTTTTTGGTACGCAATCTTGAAA
259 TCAATGTCATGTATCCTATTGA-AGGGAATGTGTTTTTGGT-CCCAATCTTGAAA
374952 CAAATGTAGG
Statistics
Matches: 13880, Mismatches: 1719, Indels: 598
0.86 0.11 0.04
Matches are distributed among these distances:
414 37 0.00
416 17 0.00
417 10 0.00
418 17 0.00
419 8 0.00
420 1 0.00
422 3 0.00
423 2 0.00
424 1 0.00
425 2 0.00
428 2 0.00
429 3 0.00
430 1 0.00
432 1 0.00
433 3 0.00
434 1 0.00
435 8 0.00
436 197 0.01
437 6 0.00
438 25 0.00
441 4 0.00
445 5 0.00
448 3 0.00
449 30 0.00
450 193 0.01
451 8 0.00
452 1 0.00
453 3 0.00
454 1 0.00
456 1 0.00
457 3 0.00
458 2 0.00
459 1 0.00
461 2 0.00
464 138 0.01
465 2 0.00
466 9 0.00
467 104 0.01
468 593 0.04
469 417 0.03
470 111 0.01
471 266 0.02
472 440 0.03
473 1197 0.09
474 3069 0.22
475 3662 0.26
476 2084 0.15
477 641 0.05
478 484 0.03
479 61 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (474 bp):
GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTG
GTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGAACAT
GTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAA
GAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
AATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTCCCAATCTTGAAAAGAATGGAGATTGT
TACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAGA
AAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAGAATGTGCTTATAGT
GCCTAATCACAAAATGAAT
Found at i:365398 original size:158 final size:157
Alignment explanation
Indices: 364762--365413 Score: 411
Period size: 158 Copynumber: 4.1 Consensus size: 157
364752 TACTAGAATC
* *
364762 CATGTTTATCTCATTTGAG-GCTTGAACTTAGATTTTGCGAAATTAGGTCGAAAAAAAGCCTTTC
1 CATGTTTATCTCATTTAAGAG-TTGAACTTAGATTTTGC-AAAATAGGTCGAAAAAAAGCCTTTC
364826 TTACGGCACCAAAACATCAATATCGCATATCCTAATGAGAAGACA-GTGTTTATGGTGCCTAATC
64 TTACGGCACCAAAACATCAATATCGCATATCCTAATGAGAAGACATGTGTTTATGGTGCCTAATC
* * *
364890 CTGAAAAGAATGGGGATTAGTATGTGTATT
129 TTGAAAAGAATGGAGATTAGTATG-ATATT
* * * * * ** * *
364920 CATGTTTGTCTTATTTAAGAG-AGAAACTTTGATTCTATAAACA-ACGGTGGAAAGAAAAGCTTT
1 CATGTTTATCTCATTTAAGAGTTG-AACTTAGATTTTGCAAA-ATA-GGTCGAAA-AAAAGCCTT
* ** * * * *** * * * * *
364983 TCTTGCAACACCAAAGCATTAATGTCTTGTATCCT-ATTA-AAGAGATTGTGTTTTTGGTACCCA
62 TCTTACGGCACCAAAACATCAATATCGCATATCCTAATGAGAAGACA-TGTGTTTATGGTGCCTA
* * * *
365046 ATCTTGGAAAGAATGGAGATT-GTTACGAGAAT
126 ATCTTGAAAAGAATGGAGATTAG-TATGATATT
* * * * ** * * *
365078 CATTGCTTATCTTATATAAGAGATGAACTT-TTTTTATGGAAAATAGGGC-AAAAAAAG-ATTTC
1 CA-TGTTTATCTCATTTAAGAGTTGAACTTAGATTT-TGCAAAATAGGTCGAAAAAAAGCCTTTC
* * ** *** * * * * *
365140 -CA-TGCAAAAGAAAATCATCAATATCATTTATCCTAAAGGGGAGA-ATGTGCTTATAGTGCCTA
64 TTACGGC--ACCAAAA-CATCAATATCGCATATCCTAATGAGAAGACATGTGTTTATGGTGCCTA
* * * * *
365202 ATCAT-AAAATGAATGAAGATCATTACTAGA-ATC
126 ATCTTGAAAA-GAATGGAGATTAGTA-T-GATATT
* *
365235 CATGTTTATCTCATTTGAG-GCTTGAACTTAGATTTTGCAAAATTTGGTCGAAAAAAAGCCTTTC
1 CATGTTTATCTCATTTAAGAG-TTGAACTTAGATTTTGCAAAA-TAGGTCGAAAAAAAGCCTTTC
*
365299 TTACGGCACCAAAACATCAATATCGCATATCGTAATGAGAAGACA-GTGTTTATGGTGCCTAATC
64 TTACGGCACCAAAACATCAATATCGCATATCCTAATGAGAAGACATGTGTTTATGGTGCCTAATC
*
365363 TTGAAAAGAATGGGGATTAGTATGACTATT
129 TTGAAAAGAATGGAGATTAGTATGA-TATT
* * **
365393 TATGTTTGTCTTTTTTAAGAG
1 CATGTTTATCTCATTTAAGAG
365414 ACAAACTTTG
Statistics
Matches: 354, Mismatches: 107, Indels: 65
0.67 0.20 0.12
Matches are distributed among these distances:
153 1 0.00
155 12 0.03
156 75 0.21
157 26 0.07
158 126 0.36
159 110 0.31
160 2 0.01
161 2 0.01
ACGTcount: A:0.34, C:0.14, G:0.19, T:0.33
Consensus pattern (157 bp):
CATGTTTATCTCATTTAAGAGTTGAACTTAGATTTTGCAAAATAGGTCGAAAAAAAGCCTTTCTT
ACGGCACCAAAACATCAATATCGCATATCCTAATGAGAAGACATGTGTTTATGGTGCCTAATCTT
GAAAAGAATGGAGATTAGTATGATATT
Found at i:370700 original size:159 final size:159
Alignment explanation
Indices: 358642--372042 Score: 2468
Period size: 159 Copynumber: 84.8 Consensus size: 159
358632 TAGACTTTAC
* * * * ***
358642 AAAAATTGGTGGGAAAAAT-GCCTTTCTTGGGAAACCAAAACATCAATATTGCGTATCCTAATGA
1 AAAAAATGGTGGAAAAAATAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA
* * * * * *
358706 GAAGACTATATTTATGGTGCCAAATCCTGAAAAGAAT-GAGGATTTG-TATGACTATTCGTGTTT
66 GAAGAATATGTTTATGGTGCCTAATCCTGAAAAGAATGGA-GATTAGTTATGA-GATTCATGTTT
* * * *
358769 GTCTTTTTTATGAAACAAACTTTGATTCTAT
129 GTCTTATTTAAGAGACAAACTTTGATTCTGT
* * ** * * ** * * *
358800 CAAAAACGGTGGAAGGAATAGCTTTTCTTGCGACACTGAAGCATCAATGTCGTGTATCCTATTGA
1 AAAAAATGGTGGAAAAAATAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA
* * * * * * * *
358865 -AGGGACTGTGTTTTTGGCT-CCCAATCTTG-AAAGAATGGAGATT-GTTATGAGAATCGATGCT
66 GA-AGAATATGTTTATGG-TGCCTAATCCTGAAAAGAATGGAGATTAGTTATGAGATTC-ATGTT
* **
358926 TGTCTTATTTAAGGGATGAACTTTGATT-T-T
128 TGTCTTATTTAAGAGACAAACTTTGATTCTGT
* * * ** * * *
358956 AAGGAAAATAAG-GCAAATAAA-AG-ATTTC-CACG-TA--AAAG-A--AA-ATCATTTATCCCA
1 AA--AAAAT-GGTGGAAA-AAATAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTA
* * * * * *
359010 ATGAG--GAATGT-TATTATGGTACCTAAT-CTCAAAATGAATGAAGATCA-TTACT-AGAATCC
62 ATGAGAAGAATATGT-TTATGGTGCCTAATCCTGAAAA-GAATGGAGATTAGTTA-TGAG-ATTC
* * * * * ** *
359069 ATGTTTGTCTCATTTGAG-GCACGAGCATAAACTTC-AT
123 ATGTTTGTCTTATTTAAGAG-ACAAACTTTGA-TTCTGT
* * * * * * ** *
359106 AAAAATTCGTGGGAAATAT-GCTTTTCTTGCAAAACCAAATTATCAATATCACGTATCCTAATGA
1 AAAAAATGGTGGAAAAAATAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA
* * * *
359170 GAAGAACATTTTTATGGTGCCTAATCCTAAAAAGAATAGGGAGGGATTAG-TATGAGTACTCATG
66 GAAGAATATGTTTATGGTGCCTAATCCTGAAAAGAAT--GGA--GATTAGTTATGAG-ATTCATG
* *
359234 TTTGTCTTATTTAAGAGATAAACTTTGATTCTATT
126 TTTGTCTTATTTAAGAGACAAACTTTGATTCT-GT
* * * * ** *
359269 AAAAACA-GG-GGAAAGAAA-AGCTTTTCATGCGACACTAAAGCATCAAGGTCATGTATCCTATT
1 AAAAA-ATGGTGGAAA-AAATAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAAT
* ** * * * *
359331 GA-AGGAA-ATGTATT-TTTTGCTCCGAATCTTGAAAAGAATGGAGATT-GTTATGATAATCGAT
64 GAGAAGAATATGT-TTATGGTG--CCTAATCCTGAAAAGAATGGAGATTAGTTATGAGATTC-AT
* * **
359392 GCTTGT-TTATTTAAGGGATGAACTTTGATT-T-T
125 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTGT
* * * ** * ** * * *
359424 AAGAAAAATAAG-GCAAATAAAT-G-ATTTC-CACATAAAAGAAAATCATCAATATCATTTCTCC
1 -A-AAAAAT-GGTGGAAA-AAATAGCCTTTCTTGC--GAAACCAAAGCATCAATATCATGTATCC
* * * * * * * *
359485 CAATGAG--GAATGTGCTTATAGTGCCTAATCAC-AAAAAGAATGAAGATCA-TTACT-AGAATC
60 TAATGAGAAGAATATGTTTATGGTGCCTAATC-CTGAAAAGAATGGAGATTAGTTA-TGAG-ATT
* * * * * *
359545 CATGTTTGTCTCATTTGAG-GCACGAACATAGACTT-TAT
122 CATGTTTGTCTTATTTAAGAG-ACAAACTTTGA-TTCTGT
* * * * * * **
359583 AAAAATTTGTGGGAAAAA-CGCTTTTCTTGCAAAAAAAAAAAGCATCAATATCATGTATCCTAAT
1 AAAAAATGGTGGAAAAAATAGCCTTTCTTGC--GAAACCAAAGCATCAATATCATGTATCCTAAT
* * * * ** * *
359647 GAGAAGAACATTTTTAGGGTGCCTAATCCTAAAAATCATGGGGATTAG-TATAAGTATTCATGTT
64 GAGAAGAATATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTTATGAG-ATTCATGTT
* **
359711 TGTCTTATTTAAGAGATAAACTTTGATTCCAT
128 TGTCTTATTTAAGAGACAAACTTTGATTCTGT
* * * ** * * ** *
359743 CAAAAATGGTGGAAAGAAA-AGCTTTTCATGCGGCACTAAAGCTTCAAGGTCATGTATCCTATTG
1 AAAAAATGGTGGAAA-AAATAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG
* * * * * * * ** *
359807 A-ACGGAATGTTTTTATGGCT-CCCAATCTTGAAAAGAATGGAGATT-GTTACGATAATAGATGA
65 AGA-AGAATATGTTTATGG-TGCCTAATCCTGAAAAGAATGGAGATTAGTTATGA-GATTCATGT
* **
359869 TTGTCTTATTTAAGGGATGAACTTTGATT-T-T
127 TTGTCTTATTTAAGAGACAAACTTTGATTCTGT
* *** ** * * * * * *
359900 AAGGAAAATAGG-GCAAAGAAA-AAATTTTGATACAAAACAAAATCATCAATATCATTTAACCTA
1 AA--AAAAT-GGTGGAAA-AAATAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTA
* * * * * *
359963 ATGAGAAG--TGTGCTTATTGTGCCTAATCAC--AAAATGAATGAAGATCA-TTACT-AGAATCC
62 ATGAGAAGAATATGTTTATGGTGCCTAATC-CTGAAAA-GAATGGAGATTAGTTA-TGAG-ATTC
* * ** * *
360022 ATGTTTGTCTCATTTGAG-GTATGAACTTAGA--CTTT
123 ATGTTTGTCTTATTTAAGAG-ACAAACTTTGATTCTGT
* * * * *
360057 ACAAAAATTGT-GAGAAAAAT-GCCTTTTTTGCAAAACCAAAACATCAATATCGTGTATCCTAAT
1 A-AAAAATGGTGGA-AAAAATAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAAT
* * * *
360120 GAGAAGACA-ATGTTTATGGCGCCCAATCCTGAAAAGAATGGGGATTAGTT-TGACCATTCATGT
64 GAGAAGA-ATATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTTATGA-GATTCATGT
*
360183 TTGTCTTGTTTAAGAGACAAACTTTGATTCCT-T
127 TTGTCTTATTTAAGAGACAAACTTTGATT-CTGT
* * * ** * **
360216 GAAAAACGGTGGAAAGAAA-AGCTTTTCTTGCGGTACCAAAGCATCAATGTCATGTATCCTTTTG
1 AAAAAATGGTGGAAA-AAATAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG
* ** * * * * * * * * * *
360280 AAAAGAAGGTGTTTTTGGTACCAAATCTTGAAAACAATGTAGATT-GTTACGAGAATCGAAGCTT
65 AGAAGAATATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTTATGAGATTC-ATGTTT
** * *
360344 GTCTTATTTAA-AGGATGAA-TGTTGATTTTAT
129 GTCTTATTTAAGA-GACAAACT-TTGATTCTGT
** * * ** * * ** * *
360375 GGAAAATAGG-GCAAGGAAA-AG-AATTCGATAC-AAATGAAAATCATCAATATCATTTATCCTA
1 AAAAAAT-GGTGGAA-AAAATAGCCTTTC-TTGCGAAA-CCAAAGCATCAATATCATGTATCCTA
* * * * * * * * * * *
360436 AAGAGGAGAATGTGCTTATAGTGCCTAATCAC--AAAATGACTGAAGATCA-TTACTAAAATCCA
62 ATGAGAAGAATATGTTTATGGTGCCTAATC-CTGAAAA-GAATGGAGATTAGTTA-TGAGATTCA
* * * ** *
360498 TGTTTGTCTCATTTGAG-GCACGAAC-TT-AGCCTTT
124 TGTTTGTCTTATTTAAGAG-ACAAACTTTGATTCTGT
* * * * **
360532 ACAAAAATTGGTGGGAAAAAT-GCCTTTTTTACGAAACCAAAACATCAATATCACATATCCTAAT
1 A-AAAAA-TGGTGGAAAAAATAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAAT
* * * *
360596 GAGAAGACTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTT-TGACTGTTTCATGT
64 GAGAAGAATATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTTATGA--GATTCATGT
* **
360660 TTGTCTTATTTAAGAGACAAATTTTGATTC-CA
127 TTGTCTTATTTAAGAGACAAACTTTGATTCTGT
* * * *
360692 ACAAAAACGGTGGAAAGAAA-AGCTTTTCTTGC-AACACCAAAGCATCAATGTCATGTATCCTAT
1 A-AAAAATGGTGGAAA-AAATAGCCTTTCTTGCGAA-ACCAAAGCATCAATATCATGTATCCTAA
* * * * * * * *
360755 TGCAG-GGAATGTGTTTTTGGTACCAAATCTTGAAAACAATGGAGATT-GTTATGAGAATCGATG
63 TG-AGAAGAATATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTTATGAGATTC-ATG
* * * **
360818 CTTGTCTTATTTAGGGGATGAACTTTGATT-T-T
126 TTTGTCTTATTTAAGAGACAAACTTTGATTCTGT
* * ** ** * * ** * * *
360850 AAGGAAAATAGG-GCAGAGAAA-AGATTTTGATACAAAAGAAAATCGTCAA-ATCATTTATCCTA
1 AA--AAAAT-GGTGGA-AAAAATAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTA
* * * * * * * * * *
360912 AAGAGGAGAATCTGCTTATAGTGGCTAATCAT-AAAATGAATGAAGATCA-TTACT-AGAATCCA
62 ATGAGAAGAATATGTTTATGGTGCCTAATCCTGAAAA-GAATGGAGATTAGTTA-TGAG-ATTCA
* * ** *
360974 TGTTTGTCTCATTT--GACGCACGAAC-TT-AAACTTT
124 TGTTTGTCTTATTTAAGA-G-ACAAACTTTGATTCTGT
* * *
361008 ACAAAAATTGGCGTG-AAAAAT-GCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAA
1 A-AAAAA-TGGTG-GAAAAAATAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAA
* * * *
361071 TGAGAAGAACATGTTTATGGTGCCTAATCCTGAAAAGAAAGGGGATTAG-TATGTGTATTCATGT
63 TGAGAAGAATATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTTATGAG-ATTCATGT
* *
361135 TTGTCTTATTTAAGAGAGAAACTTTGATTCTAT
127 TTGTCTTATTTAAGAGACAAACTTTGATTCTGT
* * * * *
361168 AAACAACGGTGGAAAGAAA-AGCTTTTCTTGC-AACACCAAAGCATTAATGTCATGTATCCT-AT
1 AAAAAATGGTGGAAA-AAATAGCCTTTCTTGCGAA-ACCAAAGCATCAATATCATGTATCCTAAT
* * * * * * ** * *
361230 TA-AAGAGATTGTGTTTTTGGTACCCAATCTTGAAAAGAAAAGAGATT-GTTACGAGAATCATTG
64 GAGAAGA-A-TATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTTATGAGATTCA-TG
* * * * ** * * *
361293 CTTATCTTATATAAGGGATGAACTTTTATTTTAT
126 TTTGTCTTATTTAAGAGACAAACTTTGATTCTGT
** * * * * * * ** * * *
361327 GGAAAATAG-GGCAAAAACAG-ATTTCCATGCAAAAGAAAATCATTAATATCATTTATCCT-ATA
1 AAAAAATGGTGGAAAAAATAGCCTTT-CTTGCGAAACCAAAGCATCAATATCATGTATCCTAAT-
* * * * * * * *
361389 GAGGAGAATGTGTCTATAGTGCCTAATCAT-AAAATGAATGAAGATCA-TTACT-AGAATTCATA
64 GAGAAGAATATGTTTATGGTGCCTAATCCTGAAAA-GAATGGAGATTAGTTA-TGAG-ATTCATG
* ** *
361451 TTTGTCTTATTT--GACGCACGAAC-TT-AAACTTT
126 TTTGTCTTATTTAAGA-G-ACAAACTTTGATTCTGT
* ** * * * *
361483 ACGAAAATTGACAGG-AAAAAT-GCTTTTCTTGTGAAACCAAAACATCAATATCGTGTATCCTAA
1 A--AAAAATG-GTGGAAAAAATAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAA
* * * *
361546 TGAGAAAAACATGTTTATGGTGCCTAATCCTGAAAAGAGA-GGGGATTAG-TATGTGTATTCATG
63 TGAGAAGAATATGTTTATGGTGCCTAATCCTGAAAAGA-ATGGAGATTAGTTATGAG-ATTCATG
* *
361609 TTTGTCTTATTTAAGAGAGAAACTTTGATTCTAT
126 TTTGTCTTATTTAAGAGACAAACTTTGATTCTGT
* * * * * *
361643 AAACAACGGTGGAAAGAAA-AGCTTTTCTTGC-AACACCAAAGCATTAATGTCTTGTATCCT-AT
1 AAAAAATGGTGGAAA-AAATAGCCTTTCTTGCGAA-ACCAAAGCATCAATATCATGTATCCTAAT
* * * * * * * * *
361705 TA-AAGAGATTGTGTTTTTGGTACCCAATCTTGGAAAGAATGGAGATT-GTTACGAGAATCATTG
64 GAGAAGA-A-TATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTTATGAGATTCA-TG
* * * * ** * * *
361768 CTTATCTTATATAAGGGATGAACTTTTATTTTAT
126 TTTGTCTTATTTAAGAGACAAACTTTGATTCTGT
** * * * * ** * * *
361802 GGAAAATAGG-GCAAAAAA-AG-ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAA
1 AAAAAAT-GGTGGAAAAAATAGCCTTT-CTTGCGAAACCAAAGCATCAATATCATGTATCCTAAT
* * * * * * * * *
361864 GGGGAGAATGTGCTTATAGTGCCTAATCAT-AAAATGAATGAAGATCA-TTACT-AGAATCCATG
64 GAGAAGAATATGTTTATGGTGCCTAATCCTGAAAA-GAATGGAGATTAGTTA-TGAG-ATTCATG
* ** * * * *
361926 TTTATCACATTT--GAGGCTTGAACTTAGATTTTG-
126 TTTGTCTTATTTAAGAGAC--AAACTTTGATTCTGT
* * * * ** *** *
361959 CAAAATTAGGTCGAAAAAA-AGCCTTTCTTACGGCACCAAAGCATCAATATCGCATATCCGAATG
1 AAAAAAT-GGTGGAAAAAATAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG
* * * *
362023 AGAAGACA-GTGTTTATGGTGCCTAATCCTGAAAAAAATGGGGATTAG-TATGACTATTCATGTT
65 AGAAGA-ATATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTTATGA-GATTCATGTT
* **
362086 TGTCTTTTTTAAGAGACAAACTTTGATTCCAT
128 TGTCTTATTTAAGAGACAAACTTTGATTCTGT
* * * * * * * ** * ** *
362118 CAAAAACGATGGAAGGAAA-AGCTTTTCTTACGACACCAAAGCGCCAATGTCACATATCCTATTG
1 AAAAAATGGTGGAA-AAAATAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG
* * * * * * * * * *
362182 ATG-GGAATGTGTTTTTGGCT-CCCAATCATGAAAAGAATGGACAATA-TTAGGAGAATCGATGC
65 A-GAAGAATATGTTTATGG-TGCCTAATCCTGAAAAGAATGGAGATTAGTTATGAGATTC-ATGT
* ** * *
362244 TTGTCTTATTTACA-AAATGAACTTTGATTTTAT
127 TTGTCTTATTTA-AGAGACAAACTTTGATTCTGT
** * * * * ** * * *
362277 TGAAAATAGG-GCAAAGAAA-AG-ATTTCCATGCAAAAGAAAATCATCAATATTATTTATCCTAA
1 AAAAAAT-GGTGGAAA-AAATAGCCTTT-CTTGCGAAACCAAAGCATCAATATCATGTATCCTAA
* ** * * * * * * * * *
362339 TGAGGATCATGTGGTTATAGTGCCTAATGAC--AAAATGAATGAACATCA-TTGCT-AGAATCCA
63 TGAGAAGAATATGTTTATGGTGCCTAAT-CCTGAAAA-GAATGGAGATTAGTT-ATGAG-ATTCA
** * *
362400 TGTTTGTCCCATTTAAG-G-CAAGAACTTAGAAT-T-T
124 TGTTTGTCTTATTTAAGAGAC-A-AACTTTGATTCTGT
* * *
362434 ACAAAAATTGGTAGG-AAAAAT-GCCTTTGTTGGGAAACCAAAACATCAATATCATGTATCCTAA
1 A-AAAAA-TGGT-GGAAAAAATAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAA
* * * * * *
362497 TGAGAA-AACTATGTTCATGGTGCCTAATCCTGAAAACAATGGGGAATAG-TAAGAGTATTCAAG
63 TGAGAAGAA-TATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTTATGAG-ATTCATG
* * *
362560 TTTGTCTTATTTGAA-AGATAAATTTTGATTCTAT
126 TTTGTCTTATTT-AAGAGACAAACTTTGATTCTGT
* ** * * * *
362594 CAAAAATGGTGGAAGGTAA-AGCTTTTCTTGCGACACCAAAGCATCAACATCATATATCCTATTA
1 AAAAAATGGTGGAA-AAAATAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTA--A
* * * * * * * * *
362658 T-AG-GGACTGTATTTTTGGCT-CCCAATCTTGAAAAGAATGGAGATT-GTTACGAGAATCGATG
63 TGAGAAGAATATGTTTATGG-TGCCTAATCCTGAAAAGAATGGAGATTAGTTATGAGATTC-ATG
* * * **
362719 CTTGTCTTATTTGAGGGATGAACTTTGATT-T-T
126 TTTGTCTTATTTAAGAGACAAACTTTGATTCTGT
* * * ** ** * * *
362751 AAGGAAAATAAG-GCAAATAAA-AG-ATTTC-CACGTAAAAGAAAATCATCAATATCATTTCTCC
1 AA--AAAAT-GGTGGAAA-AAATAGCCTTTCTTGCG--AAACCAAAGCATCAATATCATGTATCC
* * * * * * *
362812 CAATGAG--GAATGTGCTTATGGTGCCTAAT-CTCAAAATGAATGAAGATCA-TTACT-AGAATC
60 TAATGAGAAGAATATGTTTATGGTGCCTAATCCTGAAAA-GAATGGAGATTAGTTA-TGAG-ATT
* * **
362872 CATGTTTGTCTCATTTAAG-G-CATGAACATAAACTTC-GT
122 CATGTTTGTCTTATTTAAGAGACA--AACTTTGA-TTCTGT
* * * * * * *
362910 AAAAATTTGTGGGAAATAT-GCTTTTCTTGCGAAACCAAAGCATCGATATCACGTATCCTAATGA
1 AAAAAATGGTGGAAAAAATAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA
* * * * *
362974 GAAGAACATTTTTATGGTGCTTAATCCTAAAAAGAATAGG-GATTAG-TATGAGTACTCATGTTT
66 GAAGAATATGTTTATGGTGCCTAATCCTGAAAAGAAT-GGAGATTAGTTATGAG-ATTCATGTTT
*
363037 GTCTTATTTAAGAGACAAACATTGATTCTGT
129 GTCTTATTTAAGAGACAAACTTTGATTCTGT
* * * * * ** *
363068 CAAAAACGG-GAGAAAGAAA-AG-CTTTCCATGCGACACTAAAGCATCAAGGTCATGTATCCTAC
1 AAAAAATGGTG-GAAA-AAATAGCCTTT-CTTGCGAAACCAAAGCATCAATATCATGTATCCTAA
* * * * * * *
363130 TGA-AGGGAATGTGTTTTTTGCT-CCCAATCTTGAAAAGAATGGAGATT-GTTATGAGAATCGAT
63 TGAGA-AGAATATG-TTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTTATGAGATTC-AT
* ** *
363192 -TCTTGTCTTATTTAAGGGATGAACATTGATT-T-T
125 GT-TTGTCTTATTTAAGAGACAAACTTTGATTCTGT
* * ** * ** * * **
363225 AAGAAAAATAAG-GCAAATAAAT-G--TTTC-CACATAAAAGAAAATCATCAATATCATTTCCCC
1 -A-AAAAAT-GGTGGAAA-AAATAGCCTTTCTTGC--GAAACCAAAGCATCAATATCATGTATCC
* * * * * *
363285 CAATGAG--GAATGTGCTTATAGTGCCTAATCAC--AAAATGAATGAAGATCA-TTACT-AGAAT
60 TAATGAGAAGAATATGTTTATGGTGCCTAATC-CTGAAAA-GAATGGAGATTAGTTA-TGAG-AT
* * * * * * * *
363344 CCATGTTTGTCTCATTT--GAGGCATGGACATAGATTTTAT
121 TCATGTTTGTCTTATTTAAGAGACA--AACTTTGATTCTGT
* * * *
363383 AAAAATTTGTGGGAAAAAT-GCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA
1 AAAAAATGGTGGAAAAAATAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA
* * * * ** * *
363447 GAAGAACATCTTTACGGTGCCTAATCCTAAAAATCATGGGGATTAG-TATAAGTATTCATGTTTG
66 GAAGAATATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTTATGAG-ATTCATGTTTG
* *
363511 TCTTATTTAAGAGATAAACTTTGATTCTAT
130 TCTTATTTAAGAGACAAACTTTGATTCTGT
* * * * ** * ** * *
363541 CAAAAACGGTGGAAAGAAA-AGCTTTTCATGCGGCACTAAAGCATCAAGGTCATGTATTCT-ATT
1 AAAAAATGGTGGAAA-AAATAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG
* * * * * * * *
363604 A-AAGGGAATGTGTTTGTGGCT-CCCAATCTTGAAAAGACTGGAGATT-GTTACGATAATC--G-
65 AGAA--GAATATGTTTATGG-TGCCTAATCCTGAAAAGAATGGAGATTAGTTATGAGATTCATGT
* * **
363663 ATG-CTTATTTAAGGGATGAACTTTGATT-T-T
127 TTGTCTTATTTAAGAGACAAACTTTGATTCTGT
*** * * ** ** * * * *
363693 AAGGAAAATAAAGCAAATAAA-AG-ATTTC-CACGTAAAAGAAAATCATCAATATCATTTCTCCC
1 AA--AAAATGGTGGAAA-AAATAGCCTTTCTTGCG--AAACCAAAGCATCAATATCATGTATCCT
* * * * * * **
363755 ATTGAG--GAATGTGCTTATGGTGCCTAAT-CTCAAAATGAATGAAGATCA-TTACT-AGAACCT
61 AATGAGAAGAATATGTTTATGGTGCCTAATCCTGAAAA-GAATGGAGATTAGTTA-TGAGATTC-
* * * *
363815 ATGTTTGTCTCATTT--GAGGCATGAACTTAGA--CTTT
123 ATGTTTGTCTTATTTAAGAGACA--AACTTTGATTCTGT
* * * * * *
363850 ACAAAAATTGTGGGAAAAAT-GCCTTTTTTGCAAAACCAAAACATCAAAATCATGTATCCTAATG
1 A-AAAAATGGTGGAAAAAATAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG
** * *
363914 AGAAGACA-ATGTTTATGGCACCTAATCCTGAAAAGAATGGGGATTAGTT-TGACCATTCATGTT
65 AGAAGA-ATATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTTATGA-GATTCATGTT
*
363977 TGTCTTGTTTAAGAGACAAACTTTGATTCCT-T
128 TGTCTTATTTAAGAGACAAACTTTGATT-CTGT
* ** * ** *
364009 GAAAAGGGGTGGAAAGAAA-AGCTTTTCTTGCGGCACCAAAGCATCAATGTCATGTATCCT-ATG
1 AAAAAATGGTGGAAA-AAATAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG
* * * * ** * * * * * *
364072 AGGAGAATGTGTTTTTGGTACAAAATCTTGGAAAGAATGTAGATT-GTTAAGAGAATCGATGCTT
65 AGAAGAATATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTTATGAGATTC-ATGTTT
** * *
364136 GTCTTATTTGAAG-GATGAACTTTGATTTTAT
129 GTCTTATTT-AAGAGACAAACTTTGATTCTGT
* * * * * * * * *
364167 GAAAAATAGG-GCAAGGAAA-AG-ATTTC--GATGAAACAAAAAATCATCAATATCATTTGTCCT
1 AAAAAAT-GGTGGAA-AAAATAGCCTTTCTTG-CGAAAC--CAAAGCATCAATATCATGTATCCT
* * * * * * * * * *
364227 AAGGAGGAGAATGTGCTTATAGTGTCTAATCAC--AAAATGAATGAAAATCA-TTA-GTAGAATC
61 AATGAGAAGAATATGTTTATGGTGCCTAATC-CTGAAAA-GAATGGAGATTAGTTATG-AG-ATT
* * * *
364288 CATGTTTGTCTCATTTGAG-GCACAAACTTAGA--CTTT
122 CATGTTTGTCTTATTTAAGAG-ACAAACTTTGATTCTGT
* ** * *
364324 ACAAAAATTGGTGGGAAAAAT-GCCTTTCTTGCGAAACCAAAATATCAAGATCGTGTATCCTAAT
1 A-AAAAA-TGGTGGAAAAAATAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAAT
* * * * * *
364388 GAGAAGAACAAGTTTATGGTGCCTAATCCTGAAAAGAAAGGGGATTAG-TATGTGTATTCTTGTT
64 GAGAAGAATATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTTATGAG-ATTCATGTT
* *
364452 TGTCTTATTTAAGAGAGAAACTTTGATTCTAT
128 TGTCTTATTTAAGAGACAAACTTTGATTCTGT
* * * * *
364484 AAACAACGGTGGAAAGAAA-AGCTTTTCTTGC-AACACCAAAGCATTAATGTCATGTATCCT-AT
1 AAAAAATGGTGGAAA-AAATAGCCTTTCTTGCGAA-ACCAAAGCATCAATATCATGTATCCTAAT
* * * * * * * *
364546 TA-AAGAGATTGTGTTTTTGGTACCCAATCTTGGAAAGAATGGAGATT-GTTATGAGAATCATTG
64 GAGAAGA-A-TATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTTATGAGATTCA-TG
* * * * ** * * *
364609 CTTATCTTATATAAGGGATGAACTTTTATTTTAT
126 TTTGTCTTATTTAAGAGACAAACTTTGATTCTGT
** * * * * ** *
364643 GGAAAATAGG-GCAAAAAA-AG-ATTTCCATGCAAAAGAAAATCATCAATATCAT-TCATCCTAA
1 AAAAAAT-GGTGGAAAAAATAGCCTTT-CTTGCGAAACCAAAGCATCAATATCATGT-ATCCTAA
* * * * * * * * *
364704 AGGGGAGAATGTGCTTATAGTGCCTAATCAT-AAAATGAATGAAGA-TA-TTACT-AGAATCCAT
63 TGAGAAGAATATGTTTATGGTGCCTAATCCTGAAAA-GAATGGAGATTAGTTA-TGAG-ATTCAT
* * * * * *
364765 GTTTATCTCATTT--GAGGCTTGAACTTAGATTTTG-
125 GTTTGTCTTATTTAAGAGAC--AAACTTTGATTCTGT
** * * * ** * ***
364799 CGAAATTAGGTCGAAAAAA-AGCCTTTCTTACGGCACCAAAACATCAATATCGCATATCCTAATG
1 AAAAAAT-GGTGGAAAAAATAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG
* * *
364863 AGAAGACA-GTGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAG-TATGTGTATTCATGTT
65 AGAAGA-ATATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTTATGAG-ATTCATGTT
* *
364926 TGTCTTATTTAAGAGAGAAACTTTGATTCTAT
128 TGTCTTATTTAAGAGACAAACTTTGATTCTGT
* * * * * *
364958 AAACAACGGTGGAAAGAAA-AGCTTTTCTTGC-AACACCAAAGCATTAATGTCTTGTATCCT-AT
1 AAAAAATGGTGGAAA-AAATAGCCTTTCTTGCGAA-ACCAAAGCATCAATATCATGTATCCTAAT
* * * * * * * * *
365020 TA-AAGAGATTGTGTTTTTGGTACCCAATCTTGGAAAGAATGGAGATT-GTTACGAGAATCATTG
64 GAGAAGA-A-TATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTTATGAGATTCA-TG
* * * ** ** * *
365083 CTTATCTTATATAAGAGATGAACTTTTTTTATGG
126 TTTGTCTTATTTAAGAGACAAACTTTGATTCTGT
* * * * * ** * * *
365117 AAAATA-GG-GCAAAAAA-AG-ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAAG
1 AAAAAATGGTGGAAAAAATAGCCTTT-CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG
* * * * * * * * *
365178 GGGAGAATGTGCTTATAGTGCCTAATCAT-AAAATGAATGAAGATCA-TTACT-AGAATCCATGT
65 AGAAGAATATGTTTATGGTGCCTAATCCTGAAAA-GAATGGAGATTAGTTA-TGAG-ATTCATGT
* * * * * * *
365240 TTATCTCATTT--GAGGCTTGAACTTAGATTTTGC
127 TTGTCTTATTTAAGAGAC--AAACTTTGATTCTGT
** * * ** * *** *
365273 AAAATTTGGTCGAAAAAA-AGCCTTTCTTACGGCACCAAAACATCAATATCGCATATCGTAATGA
1 AAAAAATGGTGGAAAAAATAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA
* * * * *
365337 GAAGACA-GTGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAG-TATGACTATTTATGTTT
66 GAAGA-ATATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTTATGA-GATTCATGTTT
* **
365400 GTCTTTTTTAAGAGACAAACTTTGATTCCAT
129 GTCTTATTTAAGAGACAAACTTTGATTCTGT
* * * * * * * ** * *
365431 CAAAAACGATGGAAGGAAA-AGCTTTTCTTGTGACACCAAAGCGCCAATGTCATGTATCCTATTG
1 AAAAAATGGTGGAA-AAAATAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG
* * * * * * * * * *
365495 ATG-GGAATGTGTTTTTGGCT-CCCAATCATGAAAAGAATGGACACTA-TTAGGAGAATCGATGC
65 A-GAAGAATATGTTTATGG-TGCCTAATCCTGAAAAGAATGGAGATTAGTTATGAGATTC-ATGT
* * *
365557 TTGTCTTATTTACG-GA-ATGAACTTTGATTTTAT
127 TTGTCTTATTTAAGAGACA--AACTTTGATTCTGT
* * ** * * ** * * * *
365590 AGAAAATAGG-GCAAAGAAA-AGATTTTCATGCAAAAGAAAATCATAAATACCATTTATCCTAAT
1 AAAAAAT-GGTGGAAA-AAATAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAAT
* * * * * * * * * *
365653 GAGGAGAATGTGGTTATAGTGCCTAATGAC--AAAATGAATGAACATCA-TTGCT-AGAATCCAT
64 GAGAAGAATATGTTTATGGTGCCTAAT-CCTGAAAA-GAATGGAGATTAGTT-ATGAG-ATTCAT
** * * *
365714 GTTTGTCCCATTT--GAGGCAAGAACTTAGA--CTTT
125 GTTTGTCTTATTTAAGAGAC-A-AACTTTGATTCTGT
* * * *
365747 ACAAAAATTGGTAGG-AAAAAT-GCCTTTGTTGTGAAACAAAAACATCAATATCATGTATCCTAA
1 A-AAAAA-TGGT-GGAAAAAATAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAA
* * * * *
365810 TGAGAA-AACTATGTTTATGGTGCCTAATCCTGAAAACAATGGGGAATAG-TAAGAGTATTCAAG
63 TGAGAAGAA-TATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTTATGAG-ATTCATG
* * * *
365873 TTTGTCTTATTTGAGAGATAAATTTTGATTCTAT
126 TTTGTCTTATTTAAGAGACAAACTTTGATTCTGT
* * ** * * * * *
365907 CAAAAATGGTAGAAGGTAA-AGCTTTTCTTACGACACCAAAGCATCAATGTCATATATCCTATTA
1 AAAAAATGGTGGAA-AAAATAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTA--A
* * * * * * * * * * *
365971 T-AG-GGACTGTATTTTTGGCT-CCCAATCTTGAAAAGAGTGGAGATT-GTGACGAGAATCGATG
63 TGAGAAGAATATGTTTATGG-TGCCTAATCCTGAAAAGAATGGAGATTAGTTATGAGATTC-ATG
* * * **
366032 CTTGTCTTATTTGAGGGATGAACTTTGATT-T-T
126 TTTGTCTTATTTAAGAGACAAACTTTGATTCTGT
* * * ** ** * * *
366064 AAGGAAAATAAG-GCAAATAAA-AG-ATTTC-CACGTAAAAGAAAATCATCAATATCATTTCTCC
1 AA--AAAAT-GGTGGAAA-AAATAGCCTTTCTTGCG--AAACCAAAGCATCAATATCATGTATCC
* * * * * * *
366125 CAATGAG--GAATGTGCTTATGGTGCCTAAT-CTCAAAATGAATGAAGATCA-TTACT-AGAATC
60 TAATGAGAAGAATATGTTTATGGTGCCTAATCCTGAAAA-GAATGGAGATTAGTTA-TGAG-ATT
** * * ** *
366185 CATGTTTGTCCCATTT--GAGGCATGAACATAAACTTC-AT
122 CATGTTTGTCTTATTTAAGAGACA--AACTTTGA-TTCTGT
* * * * * * *
366223 AAAAATTAGTGGGAAATAT-GCTTTTCTTGCGAAACCAAAGCATCGATATCACGTATCCTAATGA
1 AAAAAATGGTGGAAAAAATAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA
* * * * *
366287 GAAGAACATTTTTATGGTGCTTAATCCTAAAAAGAATAGG-GATTAG-TATGAGTACTCATGTTT
66 GAAGAATATGTTTATGGTGCCTAATCCTGAAAAGAAT-GGAGATTAGTTATGAG-ATTCATGTTT
* *
366350 GTCTTATTTAAGAGACAAACATTGATTCTAT
129 GTCTTATTTAAGAGACAAACTTTGATTCTGT
* * * * * ** * *** *
366381 CAAAAACGGTAGAAAGAAA-AGCTTTTCATGCGGTACTAAAGCATCAAGGCCATGTATCCTATTG
1 AAAAAATGGTGGAAA-AAATAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG
* * * * * * * *
366445 A-AGGGAATGTGTTTTTTGCT-CCCAATCTTGAAAAGAATGGAGATT-GTTATGAGAATCGATGC
65 AGA-AGAATATG-TTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTTATGAGATTC-ATGT
* **
366507 TTGTCTTATTTAAGGGATGAACTTTGATT-T-T
127 TTGTCTTATTTAAGAGACAAACTTTGATTCTGT
* * * ** * ** * * *
366538 AAGAAAAATAAG-GCAAATAAAT-G-ATTTC-CACATAAAAGAAAATCATCAATATCATTTCTCC
1 -A-AAAAAT-GGTGGAAA-AAATAGCCTTTCTTGC--GAAACCAAAGCATCAATATCATGTATCC
* * * * * * * *
366599 CAATGAG--GAATGTGCTTATGGTGCCTAAT-CTCAAAATGGATGAAGATCA-TTACT-AGAATC
60 TAATGAGAAGAATATGTTTATGGTGCCTAATCCTGAAAA-GAATGGAGATTAGTTA-TGAG-ATT
** * * ** *
366659 CATGTTTGTCCCATTT--GAGGCATGAACATAAACTTC-AT
122 CATGTTTGTCTTATTTAAGAGACA--AACTTTGA-TTCTGT
* * * * * * *
366697 AAAAATTAGTGGGAAATAT-GCTTTTCTTGCGAAACCAAAGCATCGATATCACGTATCCTAATGA
1 AAAAAATGGTGGAAAAAATAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA
* * * * *
366761 GAAGAACATTTTTATGGTGCTTAATCCTAAAAAGAATAGG-GATTAG-TATGAGTACTCATGTTT
66 GAAGAATATGTTTATGGTGCCTAATCCTGAAAAGAAT-GGAGATTAGTTATGAG-ATTCATGTTT
* *
366824 GTCTTATTTAAGAGACAAACATTGATTCTAT
129 GTCTTATTTAAGAGACAAACTTTGATTCTGT
* * * * ** * *** *
366855 CAAAAACGGTGGAAAGAAA-AGCTTTTCATGCGGTACTAAAGCATCAAGGCCATGTATCCTATTG
1 AAAAAATGGTGGAAA-AAATAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG
* * * * * * * *
366919 A-AGGGAATGTGTTTTTTGCT-CCCAATCTTGAAAAGAATGGAGATT-GTTATGAGAATCGATGC
65 AGA-AGAATATG-TTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTTATGAGATTC-ATGT
* **
366981 TTGTCTTATTTAAGGGATGAACTTTGATT-T-T
127 TTGTCTTATTTAAGAGACAAACTTTGATTCTGT
* * * ** * ** * * **
367012 AAGAAAAATAAG-GCAAATAAAT-G-ATTTC-CACATAAAAGAAAATCATCAATATCATTTCCCC
1 -A-AAAAAT-GGTGGAAA-AAATAGCCTTTCTTGC--GAAACCAAAGCATCAATATCATGTATCC
* * * * * *
367073 CAATGAG--GAATGTGCTTATAGTGCCTAATCAC--AAAATGAATGAAGATCA-TTACT-AGAAT
60 TAATGAGAAGAATATGTTTATGGTGCCTAATC-CTGAAAA-GAATGGAGATTAGTTA-TGAG-AT
* * * * * * * *
367132 CCATGTTTGTCTCATTT--GAGGCATGGACATAGATTTTAT
121 TCATGTTTGTCTTATTTAAGAGACA--AACTTTGATTCTGT
* * * *
367171 AAAAATTTGTGGGAAAAAT-GCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA
1 AAAAAATGGTGGAAAAAATAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA
* * * * ** * *
367235 GAAGAACATCTTTACGGTGCCTAATCCTAAAAATCATGGGGATTAG-TATAAGTATTCATGTTTG
66 GAAGAATATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTTATGAG-ATTCATGTTTG
* *
367299 TCTTATTTAAGAGATAAACTTTGATTCTAT
130 TCTTATTTAAGAGACAAACTTTGATTCTGT
* * * * ** * ** * *
367329 CAAAAACGGTGGAAAGAAA-AGCTTTTCATGCGGCACTAAAGCATCAAGGTCATGTATTCT-ATT
1 AAAAAATGGTGGAAA-AAATAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG
* * * * * * * *
367392 A-AAGGGAATGTGTTTGTGGCT-CCCAATCTTGAAAAGACTGGAGATT-GTTACGATAATC--G-
65 AGAA--GAATATGTTTATGG-TGCCTAATCCTGAAAAGAATGGAGATTAGTTATGAGATTCATGT
* * **
367451 ATG-CTTATTTAAGGGATGAACTTTGATT-T-T
127 TTGTCTTATTTAAGAGACAAACTTTGATTCTGT
*** * * ** ** * * * *
367481 AAGGAAAATAAAGCAAATAAA-AG-ATTTC-CACGTAAAAGAAAATCATCAATATCATTTCTCCC
1 AA--AAAATGGTGGAAA-AAATAGCCTTTCTTGCG--AAACCAAAGCATCAATATCATGTATCCT
* * * * * * **
367543 ATTGAG--GAATGTGCTTATGGTGCCTAAT-CTCAAAATGAATGAAGATCA-TTACT-AGAACCT
61 AATGAGAAGAATATGTTTATGGTGCCTAATCCTGAAAA-GAATGGAGATTAGTTA-TGAGATTC-
* * * *
367603 ATGTTTGTCTCATTT--GAGGCATGAACTTAGA--CTTT
123 ATGTTTGTCTTATTTAAGAGACA--AACTTTGATTCTGT
* * * * * *
367638 ACAAAAATTGTGGGAAAAAT-GCCTTTTTTGCAAAACCAAAACATCAAAATCATGTATCCTAATG
1 A-AAAAATGGTGGAAAAAATAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG
** * *
367702 AGAAGACA-ATGTTTATGGCACCTAATCCTGAAAAGAATGGGGATTAGTT-TGACCATTCATGTT
65 AGAAGA-ATATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTTATGA-GATTCATGTT
*
367765 TGTCTTGTTTAAGAGACAAACTTTGATTCCT-T
128 TGTCTTATTTAAGAGACAAACTTTGATT-CTGT
* ** * ** *
367797 GAAAAGGGGTGGAAAGAAA-AGCTTTTCTTGCGGCACCAAAGCATCAATGTCATGTATCCT-ATG
1 AAAAAATGGTGGAAA-AAATAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG
* * * * ** * * * * * *
367860 AGGAGAATGTGTTTTTGGTACAAAATCTTGGAAAGAATGTAGATT-GTTAAGAGAATCGATGCTT
65 AGAAGAATATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTTATGAGATTC-ATGTTT
** * *
367924 GTCTTATTTGAAG-GATGAACTTTGATTTTAT
129 GTCTTATTT-AAGAGACAAACTTTGATTCTGT
* * * * * * * * *
367955 GAAAAATAGG-GCAAGGAAA-AG-ATTTC--GATGAAACAAAAAATCATCAATATCATTTGTCCT
1 AAAAAAT-GGTGGAA-AAAATAGCCTTTCTTG-CGAAAC--CAAAGCATCAATATCATGTATCCT
* * * * * * * * * *
368015 AAGGAGGAGAATGTGCTTATAGTGTCTAATCAC--AAAATGAATGAAAATCA-TTA-GTAGAATC
61 AATGAGAAGAATATGTTTATGGTGCCTAATC-CTGAAAA-GAATGGAGATTAGTTATG-AG-ATT
* ** *
368076 CATGTTTGTCTCATTT--GACG-CATGAAC-TT-AAACTTT
122 CATGTTTGTCTTATTTAAGA-GACA--AACTTTGATTCTGT
* * * * * *
368112 ACAAAAATTGGTGGGAAAAAT-GCCTTTCTTGCAAAAGCAAAACATCAATATCATTTATCCTAAA
1 A-AAAAA-TGGTGGAAAAAATAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAAT
* * ** *
368176 GAGAAGAACATTTTTATGGTGCCTAATCCTGAAAAGAAAAT-G-GATTAGTT-TGTTTATTCAAG
64 GAGAAGAATATGTTTATGGTGCCTAATCCTGAAAAG--AATGGAGATTAGTTATG-AGATTCATG
*
368238 TTTGTCTTATTTAAGAGATAAACTTTGATTCTGT
126 TTTGTCTTATTTAAGAGACAAACTTTGATTCTGT
* * * * * * *
368272 GAAAAACGGTGGAAAGAAA-AG-CTTTCCTTGCGACACCAAACCATCTATGTCATGTATCCTATT
1 AAAAAATGGTGGAAA-AAATAGCCTTT-CTTGCGAAACCAAAGCATCAATATCATGTATCCTAAT
* * * * * * * * * **
368335 GACG-AGAATGTGTTTTTGGTACCAAATCTTGGAAAGACTGGAGATT-GTTACGAGAATCGATAC
64 GA-GAAGAATATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTTATGAGATTC-ATGT
* * *** *
368398 TTGTCTTATTTAGGGGTTGAACTTTTATT-T-T
127 TTGTCTTATTTAAGAGACAAACTTTGATTCTGT
* * * * ** * * ** * *
368429 ACGGAAAATAAG-GCAAAGAA-AGAATTTTCATGCAAAAGAAAATCATCAATATCATTTAT-CTA
1 A--AAAAAT-GGTGGAAAAAATAG-CCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTA
* * * * * ** ** *
368491 GTGAGAAGAATGTGCTTATAGCGCCTAAT-CAAAAAATGAAT-GACGAACA-TTACT-AGAATCC
62 ATGAGAAGAATATGTTTATGGTGCCTAATCCTGAAAA-GAATGGA-GATTAGTTA-TGAG-ATTC
* * * * *
368552 ATGTTTGTCTTACTT--GAGGCTTGAACTTAGA--CTTT
123 ATGTTTGTCTTATTTAAGAGAC--AAACTTTGATTCTGT
* * * * * ** * *
368587 ACAAAACCTGGTGG-GAAAAT-GCCTTTCTTGTGAAACCAAAACATCAATGTCGCGTCTCCTAAA
1 A-AAAA-ATGGTGGAAAAAATAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAAT
** * * * * *
368650 GAGAAGGCTATATTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGCT-TGACCATTCATGTT
64 GAGAAGAATATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTTATGA-GATTCATGTT
***
368714 TGTCTTATTTAAGAGACAAACTTTGATTGAAT
128 TGTCTTATTTAAGAGACAAACTTTGATTCTGT
* * * * * * * * *
368746 CAAAAACGTTAGAAAAAATAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTATTCCTATTG
1 AAAAAATGGTGGAAAAAATAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTA-TCCTAATG
* * * * * * * * **
368811 ATG-GGAATGTGCTTT-TGGTTCCAAATCTTGAAAGGAATGGAGACT-GTTACGAGAATAGATGT
65 A-GAAGAATATG-TTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTTATGAG-ATTCATGT
* *** * *
368873 TTGTCTTATTTAAGGGTTGAACTTTGATTTTAT
127 TTGTCTTATTTAAGAGACAAACTTTGATTCTGT
* * * ** ** * *
368906 GAAAAATAAGG-GCAAAGAAA-AG-ATTTCGAAGC-AAAAAAAATCATCAATATCATTTATCCTA
1 -AAAAA-ATGGTGGAAA-AAATAGCCTTTC-TTGCGAAACCAAAGCATCAATATCATGTATCCTA
* * * * * * ** * *
368967 ACGAGGAGAATGTGCTTATAGTGCCTAATCACT-AAATGAATAAAGATCA-TTACT-AGAATCCA
62 ATGAGAAGAATATGTTTATGGTGCCTAATC-CTGAAAAGAATGGAGATTAGTTA-TGAG-ATTCA
* * * ** * *
369029 TGTTAGTCTGATTTGAG-GTATGAACTTAGA--CTTT
124 TGTTTGTCTTATTTAAGAG-ACAAACTTTGATTCTGT
* ** * * *
369063 ACAAAAATTAGTAGG-AAAAAT-GCCAATCTTGTGAAACGAAAACATCAATAT--TGCATATCCT
1 A-AAAAA-TGGT-GGAAAAAATAGCCTTTCTTGCGAAACCAAAGCATCAATATCATG--TATCCT
** *
369124 AATGAGAAGACCATGTTTATGGTGCCTAATCCCGAAAAGAATGTG-GATTAG-TATG-GCTATTC
61 AATGAGAAGAATATGTTTATGGTGCCTAATCCTGAAAAGAATG-GAGATTAGTTATGAG--ATTC
369186 ATGGTTT-TCTTATTTAAGAGACAAACTTTGATTCTGT
123 AT-GTTTGTCTTATTTAAGAGACAAACTTTGATTCTGT
* * * * * * *
369223 GAAAAACGGTGGAAAGAAA-AG-CTTTCCTTACGACACCAAACCATCAATGTCATGTATCCTATT
1 AAAAAATGGTGGAAA-AAATAGCCTTT-CTTGCGAAACCAAAGCATCAATATCATGTATCCTAAT
* * * * * * ** *
369286 GA-AGAGAA-AGTGTTTTTGGTACCAAATCTTGGAAAGAATGGAGACT-GTTACAAGAATCGATG
64 GAGA-AGAATA-TGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTTATGAGATTC-ATG
* ** * *** *
369348 CTTGTCTTATTTTGGGGTTGAACTATT-ATTCCAG-
126 TTTGTCTTATTTAAGAGACAAACT-TTGATT-CTGT
** ** * ** ** * ** * * *
369382 GGAAAAT-AAGGCAAGGAT----TTTCAAGCAAAAGAAAATCATCAATATCATTTATCCTAGTGA
1 AAAAAATGGTGGAAAAAATAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA
* * * * ** * * *
369442 GGAGAATGTGCTTATAGCACCTAATCAC--AAAATGAAT-GACGATCA-TTGCTG-GAATCCATG
66 GAAGAATATGTTTATGGTGCCTAATC-CTGAAAA-GAATGGA-GATTAGTT-ATGAG-ATTCATG
* * * *
369502 TTTGTCTTACTT--GAGGCAAGAACTTAGA--CTTT
126 TTTGTCTTATTTAAGAGAC-A-AACTTTGATTCTGT
* * * * * * *
369534 ACAAAAATCGGT-GAGATAAAT-GCCTTTCTGGTGAAACCAAAACATCAATATCGTATCTCCTAA
1 A-AAAAAT-GGTGGA-AAAAATAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAA
* * * * * *
369597 AGAGAAGACTATATTTATGGTGCCTAATCCTGAAAACAATGGGGATTAGTT-TGACCATTCATGT
63 TGAGAAGAATATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTTATGA-GATTCATGT
*
369661 TTGTCTTATTTAAGAGACAAACTTTGATTCCGT
127 TTGTCTTATTTAAGAGACAAACTTTGATTCTGT
* * * * *
369694 AAAAAACGGTGG-AAAAATAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGA
1 AAAAAATGGTGGAAAAAATAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA
* * * * * * * * ** *
369758 TG-GGAATGTGTTTTTGGTTCCCAATCCGGAAAAGAATGAAGACT-GTTA-GAGAATAGATGCTT
66 -GAAGAATATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTTATGAG-ATTCATGTTT
* ** * *
369820 ATCTTATTTAA-AGGATGAACTTTGATTTTATGG
129 GTCTTATTTAAGA-GACAAACTTTGA--TTCTGT
* * ** ** * *
369853 AAAATAA-GG-GCAAAGAAA-AG-ATTTCCAAGC-AAAAAAAATCA-CAAATATCATTTATCCTA
1 AAAA-AATGGTGGAAA-AAATAGCCTTT-CTTGCGAAACCAAAGCATC-AATATCATGTATCCTA
* ** * * ** * *
369912 ATGAGGAGAACGTGCTTATGGTGCCTAATCAC--AAAATGAATGAAGAAAATTTCT-AGAATTCA
62 ATGAGAAGAATATGTTTATGGTGCCTAATC-CTGAAAA-GAATGGAGATTAGTTATGAG-ATTCA
* * *
369974 TGTTAGTCTCATTT--GATG-CATGAA-TTTAGA--CTTT
124 TGTTTGTCTTATTTAAGA-GACA--AACTTT-GATTCTGT
* * * * * * *
370008 ACAAAAATTAGTGGGAAAAAT-GCCATTCTGGCAAAACCAAAACATCAATATCGTGTATCCTAAT
1 A-AAAAA-TGGTGGAAAAAATAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAAT
* ** * *
370072 AAGAAGACCATGTTTATAGTGCCTAATCCTTAAAAGAATGTG-GATTAG-TATG-GCTATTCATG
64 GAGAAGAATATGTTTATGGTGCCTAATCCTGAAAAGAATG-GAGATTAGTTATGAG--ATTCATG
* * *
370134 TTTATCTTATTTAAGAGACAAACTTTGACTCTAT
126 TTTGTCTTATTTAAGAGACAAACTTTGATTCTGT
* * * * ** * * * *
370168 CAAAAACGGT-GAAAAGAAAAGCTTTTCTTGCGGCACTAAAGCATCAATGTCATGTATCCTATTA
1 AAAAAATGGTGGAAAA-AATAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG
* ** * * * * ** * *
370232 ATG-GGAATGGGTTT-TGGTACGC-AATCTTGAAACGAATGCAGATT-GTTACAAGAATCGATGC
65 A-GAAGAATATGTTTATGGTGC-CTAATCCTGAAAAGAATGGAGATTAGTTATGAGATTC-ATGT
* ** * * *
370293 TTGTCTTATTTAAGGGATGAACTTTGCTTTTAT
127 TTGTCTTATTTAAGAGACAAACTTTGATTCTGT
** * * ** * * ** * * * * *
370326 GGAAAATAAG-GCAAAGAAA-AGATTTTCATGCAAAAGAAAACCAACAATATCATTTGTCCAAAT
1 AAAAAAT-GGTGGAAA-AAATAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAAT
* * * * * * * * * *
370389 AAGGAGAATGTGCTTATAGTGCCTAATCAC--AAAATGAATGCAAATCA-TTACT-AGAGTCCAC
64 GAGAAGAATATGTTTATGGTGCCTAATC-CTGAAAA-GAATGGAGATTAGTTA-TGAGA-TTCAT
* * * *
370450 GTTTGT-TTCATTTGAG-GCACGAACTTAGA--CTTT
125 GTTTGTCTT-ATTTAAGAG-ACAAACTTTGATTCTGT
* * * **
370483 ACAAAAATTAGT-GAGAAAAAT-GCTTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAA
1 A-AAAAA-TGGTGGA-AAAAATAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAA
* * * *
370546 TGAGAAGATTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTT-TGACCATTCAAGT
63 TGAGAAGAATATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTTATGA-GATTCATGT
*
370610 TTGTCTTATTTAAGAGACAAACTTTGATTCCGT
127 TTGTCTTATTTAAGAGACAAACTTTGATTCTGT
* * * *
370643 AAAAAATGGTGGAAAAAATAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGA
1 AAAAAATGGTGGAAAAAATAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA
* * * * * * * ** *
370708 TG-GGAATGTGGTTT-TGGTTCCCAATCTTGAAAAGAATGGAGACT-GTTACGAGAATAGATGCT
66 -GAAGAATAT-GTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTTATGAG-ATTCATGTT
* ** * *
370770 TGTCTTATTTAAGGGATGAGCTTTGATTCTATGG
128 TGTCTTATTTAAGAGACAAACTTTGATTC--TGT
* * ** * ** *
370804 AAAATAA-GG-GCAAAGAAA-AG-ATTTCGAAGCAAAAAAAAAATCATCAATATCACT-TATCCT
1 AAAA-AATGGTGGAAA-AAATAGCCTTTC-TTGC-GAAACCAAAGCATCAATATCA-TGTATCCT
* * * * ** * * * * *
370864 AATAAGGAGTATGTGCATATAGTGCCTAATCACT-AAATGAATGAAGATCA-TTACT-AGAATCC
61 AATGAGAAGAATATGTTTATGGTGCCTAATC-CTGAAAAGAATGGAGATTAGTTA-TGAG-ATTC
* * * * * *
370926 ATGTTTATCTCATTTGAG-GCACGAACTTAGA--CTTT
123 ATGTTTGTCTTATTTAAGAG-ACAAACTTTGATTCTGT
* *
370961 ACAATAATTGGTAGG-AAAAAT-GCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTAA
1 A-AA-AAATGGT-GGAAAAAATAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAA
* * *
371024 TGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGG-GATTAG-TATGAGTACTCTTG
63 TGAGAAGAATATGTTTATGGTGCCTAATCCTGAAAAGAAT-GGAGATTAGTTATGAG-ATTCATG
* *
371087 TTTGTCTTATTTGAGAGACAAACTTTGATTCTAT
126 TTTGTCTTATTTAAGAGACAAACTTTGATTCTGT
* * * *
371121 AAAAAACGGTGGAAAGAAA-AGCCTTTCTTGTC-ACACCAAAGCATCAATGTCATGTATCCTAAC
1 AAAAAATGGTGGAAA-AAATAGCCTTTCTTG-CGAAACCAAAGCATCAATATCATGTATCCTAAT
* * * * * ** * * * *
371184 GA-AGGAA-ATGTGTTTTAGGTTCCCAATCCTAAAAACTATAGAGAGTA-TTACGAGAATCAATG
64 GAGAAGAATATGT-TTAT-GGTGCCTAATCCTGAAAAGAATGGAGATTAGTTATGAGATTC-ATG
* * * *** *
371246 CTTGTCTTATTCAAGGGATGGACTTTGATTTTGT
126 TTTGTCTTATTTAAGAGACAAACTTTGATTCTGT
* * * * * ** * *
371280 GAAAAATAGG-GCAAAGAAA-AG-ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAA
1 AAAAAAT-GGTGGAAA-AAATAGCCTTT-CTTGCGAAACCAAAGCATCAATATCATGTATCCTAA
* * * * * * * *
371342 TGAGGAGAATGTGCTTATAGTG-CTGATCAC--AAAATGAATGAAGATCA-TTACT-AGAATCCA
63 TGAGAAGAATATGTTTATGGTGCCTAATC-CTGAAAA-GAATGGAGATTAGTTA-TGAG-ATTCA
** * * * *
371402 CATTTGTCTCATTT--GAGGCATGAACTTAGA--CTTT
124 TGTTTGTCTTATTTAAGAGACA--AACTTTGATTCTGT
* * * ** ***
371436 ACAAAAATTGGTGGGAAAAAT-GCTTTTCTTAC-AAATCCAAAATATCAATATCGCATATCCTAA
1 A-AAAAA-TGGTGGAAAAAATAGCCTTTCTTGCGAAA-CCAAAGCATCAATATCATGTATCCTAA
* * * * * * *
371499 TGGGAAGACTAAGTTTATGGTTCCTAATCCTGAAAAGAGTGGGGATTAGTT-TGACTATTCATGT
63 TGAGAAGAATATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTTATGA-GATTCATGT
* **
371563 TTGTCTTATCTGAA-AGACAAACTTTGATTCCAT
127 TTGTCTTAT-TTAAGAGACAAACTTTGATTCTGT
* * * * * *
371596 AAAAAACGGTGGGAAGAAAAT--CTTTTCTTGC-AACACCAAAGCCTTAATGTCATGTATCCTAT
1 AAAAAATGGT-GGAA-AAAATAGCCTTTCTTGCGAA-ACCAAAGCATCAATATCATGTATCCTAA
* * * * ** ** * *
371658 TGA-ATAGAATGTGTTTTTGGTACCCAATATTGGGAAGAATGGAGATT-GTTACGAGAATCGATG
63 TGAGA-AGAATATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTTATGAGATTC-ATG
* * * ** * * *
371721 CTTGTCTAATTTAAGGGATGAACTTTTATTTTATGG
126 TTTGTCTTATTTAAGAGACAAACTTTGA--TTCTGT
* * * * ** * * * **
371757 AAAAAA--G-GCAAAGAAA-AG-ATTTCCGTGCCAAAGAAAATCGTCAATATCATTTATCCTAGC
1 AAAAAATGGTGGAAA-AAATAGCCTTT-CTTGCGAAACCAAAGCATCAATATCATGTATCCTAAT
** * * ** * *
371817 GAGGGGAATGTGCTTATAATGCCTAATCAC--AAAATGAAT-GACGATCA-TTACT-AGAATCCA
64 GAGAAGAATATGTTTATGGTGCCTAATC-CTGAAAA-GAATGGA-GATTAGTTA-TGAG-ATTCA
* * ** *
371877 TATTTGTCTCATTT--GATGCACAAAC-TT-AAACTTT
124 TGTTTGTCTTATTTAAGA-G-ACAAACTTTGATTCTGT
* * * * *
371911 ACAAAAATTGGTGGGAAAAAT-GCCTTTCTTGCAAAACCAAAACATCAATATCGTATATCCTAAT
1 A-AAAAA-TGGTGGAAAAAATAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAAT
* * * * *
371975 GAGAAGAACATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGACTAG-TGTG-TATTCATGTTT
64 GAGAAGAATATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTTATGAGATTCATGTTT
372038 GTCTT
129 GTCTT
372043 TAAAGAGAAG
Statistics
Matches: 9299, Mismatches: 2929, Indels: 2032
0.65 0.21 0.14
Matches are distributed among these distances:
146 3 0.00
147 23 0.00
148 46 0.00
149 18 0.00
150 6 0.00
151 13 0.00
152 78 0.01
153 25 0.00
154 186 0.02
155 168 0.02
156 508 0.05
157 1061 0.11
158 3126 0.34
159 3280 0.35
160 495 0.05
161 153 0.02
162 50 0.01
163 60 0.01
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (159 bp):
AAAAAATGGTGGAAAAAATAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA
GAAGAATATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTTATGAGATTCATGTTTGT
CTTATTTAAGAGACAAACTTTGATTCTGT
Found at i:377187 original size:159 final size:156
Alignment explanation
Indices: 375637--380977 Score: 1152
Period size: 159 Copynumber: 33.8 Consensus size: 156
375627 GAAGATTATA
* * * * * * *
375637 TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACCATTCGTTTTTGTCATATTTAAG
1 TTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATGA-GAATCATGTTTGTCTTATTTAAG
* ** * **
375702 AGACAAACTTTGATTCCATCAAAAACAGTGGAAAGAATAGATTTTCTTGCGACACCAAAGCATCA
65 AGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCCTTTCTTGCGA-ACCAAAGCATCA
* * * * * **
375767 ATGTCATGTATCCTATTGATGGGAATGTG
129 ATATCATGTATCCTAAT-AAGAGACTAAG
* * * * * * * ** *
375796 TTTTTGATTCCCAATCTTGAAAAGAATGGAGACTATTACAAGAATCGATGCTTGTCTTATTTAAG
1 TTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATGAGAATC-ATGTTTGTCTTATTTAAG
* ** * * ** *** ** *
375861 GGATGAACTTTGATTTTAT-AGAAAATAAGG-GCAAAGAAAAGATTTTGAAGCGAAAAAAATCAT
65 AGACAAACTTTGATTCTATCA-AAAAT--GGTGGAAAGAAAAGCCTTTCTTGCGAACCAAAGCAT
* * * **
375924 CAATATCATTTA-CCTTAATGAGGAGAATCTG
127 CAATATCATGTATCC-TAAT-AAGAGACTAAG
* * * ** * **
375955 CTTATAGTGCCTAAT-CAGAAAATGAAT-GATGACCATTACAAGAATCCATGTTTGTC--AGTTT
1 TTTATGGTGCCTAATCCTGAAAA-GAATGGA-GATTAGTATGAGAAT-CATGTTTGTCTTA-TTT
* * * * * * * *
376016 -TGAGGCATGAACTTAGATTTTA-CAAAAATTAGTGGGAA-AAATGCCATTCTTGCGAAACCAAA
62 AAGAGACA--AACTTTGATTCTATCAAAAA-TGGTGGAAAGAAAAGCCTTTCTTGCG-AACCAAA
* *** *
376078 ACATCAATATCGCATATCCTAAAAAGAAGACTATA-
123 GCATCAATATCATGTATCCTAATAAG-AGACTA-AG
* * * * * * * * * *
376113 TTTATGATGCCTAATACTGAAAAAAATGGGGATTAGTTTAACTATTCATGTTTGTGTTATTTAAA
1 TTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATGA-GAATCATGTTTGTCTTATTTAAG
* * * * * * * *
376178 AAACAAACTTTGATTCCATCAAAAACGTTGGAAAGAATAGCTTTTCTTACGGCACCAAAGCATCA
65 AGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCCTTTCTTGC-GAACCAAAGCATCA
* * * * * * * **
376243 ATGTCAAGTGTCCTATTGATGGGAATGTG
129 ATATCATGTATCCTAAT-AAGAGACTAAG
* * * * * * *
376272 TTT-TGGTTCCCAATCTTGAAAAGAATGGAGACT-GTTACGAGAATCGATGCTTGTCTTATTTAT
1 TTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAG-TATGAGAATC-ATGTTTGTCTTATTTAA
* ** * * * * ** ** * ** *
376335 GGGATGAACTTTGATTTTATGGAAAATAT-GAGCAAAGAAAA-TATTTCCAAGCAAAGAAAATCA
64 GAGACAAACTTTGATTCTAT-CAAAA-ATGGTGGAAAGAAAAGCCTTT-CTTGCGAACCAAAGCA
* * **
376398 TCAATATCATTTATCCTAATAAGGAGAATGTG
126 TCAATATCATGTATCCTAATAA-GAGACTAAG
* ** ** * * * *
376430 CTTACAGTGCCTAATCAC--AAAATGAATAAAGATCATTACT-AGAATCCATATTTGTCTCATTT
1 TTTATGGTGCCTAATC-CTGAAAA-GAATGGAGATTAGTA-TGAGAAT-CATGTTTGTCTTATTT
* * * * *
376492 GAG-GCACGAACTTAGACTT-TA-CAATAAT--TGGAAGGAAAAATGCCTTTCTTGCGAAGCCAA
62 AAGAG-ACAAACTTTGA-TTCTATCAAAAATGGTGGAAAG-AAAA-GCCTTTCTTGCGAA-CCAA
* * *
376552 AGCCTTAATATCGTGTATCCTAATAAGAAGACTAAG
122 AGCATCAATATCATGTATCCTAATAAG-AGACTAAG
* * * * *
376588 TTTATGGTGCCTAATCCTGAAAAGAAGGGGGATTAGTATGAGTATTCATGTTTGTCTTATTCAAC
1 TTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATGAG-AATCATGTTTGTCTTATTTAAG
*
376653 AGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCA
65 AGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCCTTTCTTGCGA-ACCAAAGCATCA
* * * * *
376718 ATGTCATGCATCCTATTGAAGGGAC-AGTG
129 ATATCATGTATCCTAAT-AAGAGACTA-AG
* * * * *
376747 TTTTTGGCT-CCCAATCTTGAAAAGAATGGAGATT-GTTACGAGAATCGATGCTTGTCTTATTTA
1 TTTATGG-TGCCTAATCCTGAAAAGAATGGAGATTAG-TATGAGAATC-ATGTTTGTCTTATTTA
** * * * * ** ** *
376810 A-AGGATGAACTTTGATTTTATGGAAAATAAGGT--AAAGAAAAG-ATTTC-CACGAAAAAAAAT
63 AGA-GACAAACTTTGATTCTAT-CAAAA-ATGGTGGAAAGAAAAGCCTTTCTTGCG-AACCAAAG
* * * * * *
376870 CATCAATATCATTTTTCTTAATACG-GAATATG
124 CATCAATATCATGTATCCTAATAAGAGACTAAG
* * ** * * * *
376902 CTTATAGTGCCTAATCAC--AAAATGAATAAAGATCATTACT-AGAATCCATATTTGTCTCATTT
1 TTTATGGTGCCTAATC-CTGAAAA-GAATGGAGATTAGTA-TGAGAAT-CATGTTTGTCTTATTT
* * * * *
376964 GAG-GCACGAACTTAGACTT-TA-CAATAAT--TGGAAGGAAAAATGCCTTTCTTGCGAAGCCAA
62 AAGAG-ACAAACTTTGA-TTCTATCAAAAATGGTGGAAAG-AAAA-GCCTTTCTTGCGAA-CCAA
*
377024 AGCATCAATATCGTGTATCCTAATAAGAAGACTAAG
122 AGCATCAATATCATGTATCCTAATAAG-AGACTAAG
* * * *
377060 TTTATGGTGCCTAATCCTGAAACGAATGGGGATTAGTATGAGTACTCTTGTTTGTCTTATTTAAG
1 TTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATGAG-AATCATGTTTGTCTTATTTAAG
377125 AGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCCTTTCTTGCGACACCAAAGCATCA
65 AGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCCTTTCTTGCGA-ACCAAAGCATCA
* *
377190 ATATCATGTATCCTAATGAAGGAAAC-ATG
129 ATATCATGTATCCTAAT-AA-GAGACTAAG
* * * ** * * * * *
377219 TTT-TAGGTTCCCAATCCTAAAAACTATGGAGAGTATTACGAGAATCAATGCTTGTCTTATTCAA
1 TTTAT-GGTGCCTAATCCTGAAAAGAATGGAGATTAGTATGAGAATC-ATGTTTGTCTTATTTAA
* *** * * * * * * * ** *
377283 GGGATGGACTTTGATTTTGTGAAAAATAGG-GTAAAGAAAAG-ATTTCCATGCAAAAGAAAATCA
64 GAGACAAACTTTGATTCTATCAAAAAT-GGTGGAAAGAAAAGCCTTT-CTTGC-GAACCAAAGCA
* * * * **
377346 TCAATATCATTTACCCTAATGAGGAGAATGTG
126 TCAATATCATGTATCCTAAT-AAGAGACTAAG
* * * * * * * *
377378 CTTATAGTGCCTAATCAC--AAAATGAATGAAGATCATTACT-AGAATCCACGCTTGTCTCATTT
1 TTTATGGTGCCTAATC-CTGAAAA-GAATGGAGATTAGTA-TGAGAAT-CATGTTTGTCTTATTT
* * * * **
377440 --GAGGCATGAACTTAGA--CTATACAAAAATTGGTGGGAA-AAATGCCTTTCTCACGAAACCAA
62 AAGAGACA--AACTTTGATTCTAT-CAAAAA-TGGTGGAAAGAAAAGCCTTTCTTGCG-AACCAA
* * * **
377500 AACATCATTGTCATGCCTCCTAA-AGAGAAGACTATA-
122 AGCATCAATATCATGTATCCTAATA-AG-AGACTA-AG
* * * * * * * *
377536 TTTATGATGTCTAAT-CTAGAAAAGAGTGGGGATTAGTTTGACTATTCATTTTTGTCTTATTTAA
1 TTTATGGTGCCTAATCCT-GAAAAGAATGGAGATTAGTATGA-GAATCATGTTTGTCTTATTTAA
* * * *
377600 GAGACAAACTTTGATTCCATAAAAAATGGTGGAAAGAATAGCTTTTCTTGCGACACCAAAGCATC
64 GAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCCTTTCTTGCGA-ACCAAAGCATC
* * * * * **
377665 AATGTCATGTATCCTATTGATGGGAATGTG
128 AATATCATGTATCCTAAT-AAGAGACTAAG
* * * * * * * * *
377695 TTTTTGGTTCCCAATCTTGAAATGAATGGAGACT-GTTACGAGAATAGATGCTTGTCTTATTTAA
1 TTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAG-TATGAGAAT-CATGTTTGTCTTATTTAA
* ** * ** *** * ** ** *
377759 GGGATGAACTTTGATTTTATGGAAAATAAAGGCAAAGAAAAG-ATTTCCAAGC-AAAAAAATCAT
64 GAGACAAACTTTGATTCTATCAAAAATGGTGG-AAAGAAAAGCCTTT-CTTGCGAACCAAAGCAT
* * * **
377822 CAATATCATTTATCCTAATGAGGAGAATGTG
127 CAATATCATGTATCCTAAT-AAGAGACTAAG
* * * * * * * **
377853 CTTATAGTGCCCAATCAC--AAAATGAATGAAGATCATTACT-AGAATCCATGTTAGTCTCGTTT
1 TTTATGGTGCCTAATC-CTGAAAA-GAATGGAGATTAGTA-TGAGAAT-CATGTTTGTCTTATTT
* * * * * * * *
377915 GAG-GCACGAACTTAGACTT-TA-CAAAAATTAGTGGGAA-AAATGCCATTCTTGTGAAACCGAA
62 AAGAG-ACAAACTTTGA-TTCTATCAAAAA-TGGTGGAAAGAAAAGCCTTTCTTGCG-AACC-AA
* ** * *
377976 A-CATCAGTATCGCGTATCCTAATAAGAAGACCATG
122 AGCATCAATATCATGTATCCTAATAAG-AGACTAAG
* * * * *
378011 TTTACGGTGCCTAATCCT-AAAA-ATATTGTGCATTAGAATG-GCTATTCATGTTTGTCTTATTT
1 TTTATGGTGCCTAATCCTGAAAAGA-ATGGAG-ATTAGTATGAG--AATCATGTTTGTCTTATTT
* * * * *
378073 AAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGGCACCAAAGCA
62 AAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCCTTTCTTG-CGAACCAAAGCA
* * * * * **
378138 TCAATGTCATGTATCCTATTGATGGGAATGGGG
126 TCAATATCATGTATCCTAAT-AAGAGACT-AAG
* * * * * ** *
378171 TTT-TGGTACGC-AATCTTGAAACA-AATGTAGATGATTACAAGAATCGATGCTTGTCTTATTTA
1 TTTATGGTGC-CTAATCCTGAAA-AGAATGGAGATTAGTATGAGAATC-ATGTTTGTCTTATTTA
* ** * * * * * * ** * ** *
378233 AGGGATGAACATTGATTTTATGGAAAATAAGG-GCAAAGAAAAG-ATTTCCAAGCAAAAAAAATC
63 AGAGACAAACTTTGATTCTAT-CAAAA-ATGGTGGAAAGAAAAGCCTTT-CTTGCGAACCAAAGC
* * * * **
378296 ACCAATATCATTTATCCTAATGAGGAGAATGTG
125 ATCAATATCATGTATCCTAAT-AAGAGACTAAG
* * * * * **
378329 CTTATAGTGCCTAATCAC--AAAATGAATGAAGGTTA-T-TGCTAGAATCCATGTTTGTATCGTT
1 TTTATGGTGCCTAATC-CTGAAAA-GAATGGAGATTAGTATG--AGAAT-CATGTTTGTCTTATT
* * ** * * *
378390 T--GAGGCATGACTTT-AAAC-ATTACAAAAATTGGTAGG-AA-AAAGGCGTTTCTTGTGAAACC
61 TAAGAGACA-AACTTTGATTCTA-T-CAAAAA-TGGT-GGAAAGAAAAGCCTTTCTTGCG-AACC
* * *
378449 AAAGCATTAATATCGTGTATCCTAA-ACAGA-ACAACATG
120 AAAGCATCAATATCATGTATCCTAATA-AGAGACTA-A-G
* * *
378487 TTTATGGTGCCTAATCCTGAAAAGAAT-GAGGATTAGTGTGAGTATTCATGTTTATCTTATTTAA
1 TTTATGGTGCCTAATCCTGAAAAGAATGGA-GATTAGTATGAG-AATCATGTTTGTCTTATTTAA
* * *
378551 GAGACAAACTTTGATTCTAT-ATAAAATGGTGGAAGGAAAAGCTTTTCTTGCGACACCAAAGCAA
64 GAGACAAACTTTGATTCTATCA-AAAATGGTGGAAAGAAAAGCCTTTCTTGCGA-ACCAAAGCAT
* * * * *
378615 CAATGTCATGCATCCTATTGAAGGGAC-AGTG
127 CAATATCATGTATCCTAAT-AAGAGACTA-AG
* * * * * *
378646 TTTTTGGCT-CCCAATCTTGAAAAGAGTGGAGATT-GTTATGAGAATCGATGCTTGTTTTATTTA
1 TTTATGG-TGCCTAATCCTGAAAAGAATGGAGATTAG-TATGAGAATC-ATGTTTGTCTTATTTA
* ** * *** * * * * * ** *
378709 AGGGATGAACTTTGATTTTATGGGAAATAAG-GCAAAGAAAA-CATTTCCATGCAAAAGAAAATC
63 AGAGACAAACTTTGATTCTATCAAAAAT-GGTGGAAAGAAAAGCCTTT-CTTGC-GAACCAAAGC
* * * **
378772 ATCAATATCATTTATCCTAATGAGGAGAATGTG
125 ATCAATATCATGTATCCTAAT-AAGAGACTAAG
* * * * * * * * * *
378805 CTTATAGTACCTAA-CCAGAAAATGAATGAAGATCATTACT-AGAATCCGTATTTGTCTCATTT-
1 TTTATGGTGCCTAATCCTGAAAA-GAATGGAGATTAGTA-TGAGAAT-CATGTTTGTCTTATTTA
* * ** * * *
378867 -GAGGCATGCACTTAAACTT-TA-CAGAAATTGGTGG-GAGAAAGGCCTTTCTTGCGAAACCAAA
63 AGAGACA--AACTTTGA-TTCTATCA-AAAATGGTGGAAAGAAAAGCCTTTCTTGCG-AACCAAA
* *
378928 GGATCAATATCATGTATCCTAA-ATAGA-ACAACATG
123 GCATCAATATCATGTATCCTAATA-AGAGACTA-A-G
* * *
378963 TTTATAGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTACTCATGTTTGTCTTATTTAAG
1 TTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATGAG-AATCATGTTTGTCTTATTTAAG
* * *** *
379028 AGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAACCATTCCCACGACACCAAAGCTTCA
65 AGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCCTTTCTTGCGA-ACCAAAGCATCA
* * * *
379093 ATGTCATATATCCTAATGAAGTA-AATATAT
129 ATATCATGTATCCTAAT-AAG-AGACTA-AG
* * * * * *
379123 TTTA-GGTTCCCAATCCT-AAAA-ACA---AGACT-GTTACGAGAATTGATGCTTGTCTTATTTA
1 TTTATGGTGCCTAATCCTGAAAAGA-ATGGAGATTAG-TATGAGAA-TCATGTTTGTCTTATTTA
* * * ** * * * * ** *
379181 AGGGATGAAA-TTTGATTTTATGGAAAATAGG-GCAAAGAAAAG-ATTTCCATGCAAATGAAAAT
63 AGAGA-CAAACTTTGATTCTATCAAAAAT-GGTGGAAAGAAAAGCCTTT-CTTGCGAA-CCAAAG
* * ** * **
379243 CATTAATATCATTTATCCTAATTTGGAGAATGTG
124 CATCAATATCATGTATCCTAA-TAAGAGACTAAG
* ** * ** *
379277 CTTATACTACCTAATCAC--AAAATGAAT-GATGACCA-T-T-AGAATCCATGTTTGTCTTACTT
1 TTTATGGTGCCTAATC-CTGAAAA-GAATGGA-GATTAGTATGAGAAT-CATGTTTGTCTTATTT
* * * *
379336 --GAGGCATGAACTTAGACTT-TA-CAAAAATTGGTGGGAA-AAATGCCTTT-TTCGCGAAACCA
62 AAGAGACA--AACTTTGA-TTCTATCAAAAA-TGGTGGAAAGAAAAGCCTTTCTT-GCG-AACCA
* * *** *
379395 AAACATCAGTATCGCATCTCCTAA-AGAGAAGACTATA-
121 AAGCATCAATATCATGTATCCTAATA-AG-AGACTA-AG
* * * * * *
379432 TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTTACCATTCATGTTTGTCTTGTTTAAG
1 TTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATGA-GAATCATGTTTGTCTTATTTAAG
* * * * *
379497 CGAAAAACTTTGATTCTATCAAAAACGGTGGAAAAAAAAGCCTTTCTTGCGACACCAAAACATCA
65 AGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCCTTTCTTGCGA-ACCAAAGCATCA
*
379562 ATGTCATGTATCCTAATGAAG-GA--AATG
129 ATATCATGTATCCTAAT-AAGAGACTAA-G
* * * * ** * * * * *
379589 TGTTTTAGGTTCCCAATCCTAAAAACTATGGAGAGTATTACGAGAATCAATGCTTGTCTTATTCA
1 T-TTAT-GGTGCCTAATCCTGAAAAGAATGGAGATTAGTATGAGAATC-ATGTTTGTCTTATTTA
* *** * * * * * * * * ** *
379654 AGGGATGGACTTTGATTTTGTGAAAAAAAGG-GCAAAGAAAAG-ATTTCCATGCAAAAGAAAATC
63 AGAGACAAACTTTGATTCTAT-CAAAAATGGTGGAAAGAAAAGCCTTT-CTTGC-GAACCAAAGC
* * * **
379717 ATCAATATCATTTACCCTAATGAGGAGAAC-GGG
125 ATCAATATCATGTATCCTAAT-AAGAG-ACTAAG
* ** * * * * * *
379750 CTTAAAGTGCCTAATCAC--AAAATGAATGAAGATCATTACT-AGAATCCACGCTTGTCTCATTT
1 TTTATGGTGCCTAATC-CTGAAAA-GAATGGAGATTAGTA-TGAGAAT-CATGTTTGTCTTATTT
* * * * * * *
379812 --GAGTCATGAACTTGGACTCTA-CAAAAATTGGTGGAAA-AAATGCTTTTCTTACAAATCCAAA
62 AAGAGACA--AACTTTGATTCTATCAAAAA-TGGTGGAAAGAAAAGCCTTTCTTGCGAA-CCAAA
** * *
379873 ATATCAATATCGTAG-ATCCTAATGAGAAGACTAAG
123 GCATCAATATCAT-GTATCCTAATAAG-AGACTAAG
* * * * * * *
379908 TTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTTTAACTATTCATGTTTGTCTTATCTAAG
1 TTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATGA-GAATCATGTTTGTCTTATTTAAG
* * * * *
379973 GGACAAACTTTGATTCCATCAAAAATGGTGGAAAGGAAAGCTTTTCTTGCAACACCAAAGCATCA
65 AGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCCTTTCTTGCGA-ACCAAAGCATCA
* * * * **
380038 ATGTCATGTATCCTATTGAATAGAATGTG
129 ATATCATGTATCCTAAT-AAGAGACTAAG
* ** ** * *
380067 TTTTTGGTATCTAATATTGGAAAGAATGGAGATT-GTTATGAGAATCAATGCTTGTCTTATTTAA
1 TTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAG-TATGAGAATC-ATGTTTGTCTTATTTAA
* ** * * * * * * * * * * *
380131 GGGATGAACTTTTATTTTATGAAAAATAAG-GCAAAGAAAAGACTTCCATGCAAACGAAAATCAT
64 GAGACAAACTTTGATTCTATCAAAAAT-GGTGGAAAGAAAAGCCTTTCTTGCGAAC-CAAAGCAT
* * * **
380195 CAATATCATTTATCC-AAGTGAGAAGAATGTG
127 CAATATCATGTATCCTAA-TAAG-AGACTAAG
* * * * * **
380226 CTTATAGTGCCTAATCAC--AAAATGAAT-GACGGTCATTACT-AGAATCCATGTTTGTCCCATT
1 TTTATGGTGCCTAATC-CTGAAAA-GAATGGA-GATTAGTA-TGAGAAT-CATGTTTGTCTTATT
* * * * *
380287 T--GAGGCTTGAACTTAGACTT-TA-CAAAAATTGGTGG--GGAAAATGCCTTTCTTGCAAATCC
61 TAAGAGAC--AAACTTTGA-TTCTATCAAAAA-TGGTGGAAAGAAAA-GCCTTTCTTGCGAA-CC
* * * ** * * * *
380346 AAAACTTTAATATCGCGTATCCTAAAGAAAAGA-AAATA
120 AAAGCATCAATATCATGTATCCT-AATAAGAGACTAA-G
* *
380384 TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATG-GCTATTCATGTTTGTCTTATTTAA
1 TTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATGAG--AATCATGTTTGTCTTATTTAA
* * * * *
380448 TAGACAAACTTTGATTCCATCAAAAATGGTGGAAAGAAATGCTTTTCTTGTGACACCAAAGCATC
64 GAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCCTTTCTTGCGA-ACCAAAGCATC
** * * * **
380513 AATGCCATGTATCCTATTGAAGGGAATGTG
128 AATATCATGTATCCTAAT-AAGAGACTAAG
* * * * *
380543 TTT-T--TG-GT-ATCTTGAAAA-AATTGTAGATT-GTTACGAGAATCGATGCTTGTCTTATTTA
1 TTTATGGTGCCTAATCCTGAAAAGAA-TGGAGATTAG-TATGAGAATC-ATGTTTGTCTTATTTA
* ** * ** * * * * * ** *
380601 AGGGATGAACTTTGATTTTATGGAAAATAAG-GCAAAGAAAAG-ATTTCCATGCAAAAGAAAATC
63 AGAGACAAACTTTGATTCTATCAAAAAT-GGTGGAAAGAAAAGCCTTT-CTTGC-GAACCAAAGC
* * * * * * **
380664 ATCAATATAATTTCTGCTAATGAG-GAATTTG
125 ATCAATATCATGTATCCTAATAAGAGACTAAG
* * * * * *
380695 CTTATAGTGCCTAATCAC--AAAATGAATGAAGATTATTAT-AGAATCCATGTTTGTCTCATTTG
1 TTTATGGTGCCTAATC-CTGAAAA-GAATGGAGATTAGTATGAGAAT-CATGTTTGTCTTATTTA
* * * * ** **
380757 AG-GCACAAACATAGACTT-TA-CAATAATTGGTGGGAA-AAGTGCCTTTCTTGTAAAACCAAAG
63 AGAG-ACAAACTTTGA-TTCTATCAA-AAATGGTGGAAAGAAAAGCCTTTCTTG-CGAACCAAAG
* *
380818 CATCAATATCGTGTATCCTAA-ACAGAAGAAC-ATG
124 CATCAATATCATGTATCCTAATA-AG-AG-ACTAAG
* * * *
380852 TTTATGGTGCCTAATCCTGAAAAGAATGG-GCATTAGTATGACTATTCGTGCTTGTCTTATTTAA
1 TTTATGGTGCCTAATCCTGAAAAGAATGGAG-ATTAGTATGA-GAATCATGTTTGTCTTATTTAA
* **
380916 GAGACAAACTTTTATTCTATCAAAAACAGTGGAAAGAAAAGCCTTTCTTGCGACACCAAAGC
64 GAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCCTTTCTTGCGA-ACCAAAGC
380978 TTTAATGTCA
Statistics
Matches: 3622, Mismatches: 1162, Indels: 796
0.65 0.21 0.14
Matches are distributed among these distances:
150 1 0.00
152 12 0.00
153 20 0.01
154 105 0.03
155 249 0.07
156 146 0.04
157 197 0.05
158 1078 0.30
159 1592 0.44
160 186 0.05
161 36 0.01
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (156 bp):
TTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATGAGAATCATGTTTGTCTTATTTAAGA
GACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCCTTTCTTGCGAACCAAAGCATCAAT
ATCATGTATCCTAATAAGAGACTAAG
Found at i:377608 original size:476 final size:476
Alignment explanation
Indices: 375618--381315 Score: 7243
Period size: 476 Copynumber: 12.0 Consensus size: 476
375608 TGATCGCGTC
* * *
375618 TCCTAAAGAGAAGATTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACCATT
1 TCCTAAAGAGAAGACTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATT
* * * ** * *
375683 CGTTTTTGTCATATTTAAGAGACAAACTTTGATTCCATCAAAAACAGTGGAAAGAATAGATTTTC
66 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCTTTTC
* * *
375748 TTGCGACACCAAAGCATCAATGTCATGTATCCTATTGATGGGAATGTGTTTTTGATTCCCAATCT
131 TTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGAAATGTGTTTTTGGTTCCCAATCT
* * *
375813 TGAAAAGAATGGAGACTATTACAAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT
196 TAAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT
* ** * *
375878 ATAGAAAATAAGGGCAAAGAAAAGATTTTGAAGCGAAA-AAAATCATCAATATCATTTA-CCTTA
261 ATGGAAAAT-AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCC-TA
* * * * *
375941 ATGAGGAGAATCTGCTTATAGTGCCTAATCAGAAAATGAATGATGACCATTACAAGAATCCATGT
324 ATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
*** * * *
376006 TTGTCAGTTTTGAGGCATGAACTTAGATTTTACAAAAATTAGTGGGAAAAATGCCATTCTTGCGA
389 TTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGA
**
376071 AACCAAAACATCAATATCGCATA
454 AACCAAAACATCAATATCGTGTA
* * * * * *
376094 TCCTAAAAAGAAGACTATATTTATGATGCCTAATACTGAAAAAAATGGGGATTAGTTTAACTATT
1 TCCTAAAGAGAAGACTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATT
* * * * * *
376159 CATGTTTGTGTTATTTAAAAAACAAACTTTGATTCCATCAAAAACGTTGGAAAGAATAGCTTTTC
66 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCTTTTC
* * * * * *
376224 TTACGGCACCAAAGCATCAATGTCAAGTGTCCTATTGATGGGAATGTG-TTTTGGTTCCCAATCT
131 TTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGAAATGTGTTTTTGGTTCCCAATCT
* *
376288 TGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTATGGGATGAACTTTGATTTT
196 TAAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT
* * *
376353 ATGGAAAATATGAGCAAAGAAAATATTTCCAAGC-AAAGAAAATCATCAATATCATTTATCCTAA
261 ATGGAAAATA-GGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAA
* * * *
376417 TAAGGAGAATGTGCTTACAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATATT
325 TGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTT
* * **
376482 TGTCTCATTTGAGGCACGAACTTAGACTTTACAATAATTGGAAGGAAAAATGCCTTTCTTGCGAA
390 TGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAA
* * * *
376547 GCCAAAGCCTTAATATCGTGTA
455 ACCAAAACATCAATATCGTGTA
* *
376569 TCCTAATA-AGAAGACTA-AGTTTATGGTGCCTAATCCTGAAAAGAAGGGGGATTAGTATGAGTA
1 TCCTAA-AGAGAAGACTATA-TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTA
* * *
376632 TTCATGTTTGTCTTATTCAACAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTT
64 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCTTT
* * *
376697 TCTTGCGACACCAAAGCATCAATGTCATGCATCCTATTGAAGGGACA-GTGTTTTTGGCTCCCAA
129 TCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAA-GGAAATGTGTTTTTGGTTCCCAA
* * *
376761 TCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAAGGATGAACTTTGAT
193 TCTTAAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGAT
* * * * *
376826 TTTATGGAAAATAAGGTAAAGAAAAGATTTCCACG-AAAA-AAAATCATCAATATCATTTTTCTT
258 TTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCT
* * * *
376889 AAT-ACG-GAATATGCTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATA
323 AATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* * **
376952 TTTGTCTCATTTGAGGCACGAACTTAGACTTTACAATAATTGGAAGGAAAAATGCCTTTCTTGCG
388 TTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCG
* *
377017 AAGCCAAAGCATCAATATCGTGTA
453 AAACCAAAACATCAATATCGTGTA
* *
377041 TCCTAATA-AGAAGACTA-AGTTTATGGTGCCTAATCCTGAAACGAATGGGGATTAGTATGAGTA
1 TCCTAA-AGAGAAGACTATA-TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTA
* * * *
377104 CTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCCTT
64 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCTTT
* * ** *
377169 TCTTGCGACACCAAAGCATCAATATCATGTATCCTAATGAAGGAAACATGTTTTAGGTTCCCAAT
129 TCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGAAATGTGTTTTTGGTTCCCAAT
* ** * * * * *
377234 CCTAAAAACTATGGAGAGTATTACGAGAATCAATGCTTGTCTTATTCAAGGGATGGACTTTGATT
194 CTTAAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATT
* * * *
377299 TTGTGAAAAATAGGGTAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTACCCTA
259 TTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTA
* *
377364 ATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACGC
324 ATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
* **
377429 TTGTCTCATTTGAGGCATGAACTTAGACTATACAAAAATTGGTGGGAAAAATGCCTTTCTCACGA
389 TTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGA
* * * **
377494 AACCAAAACATCATTGTCATGCC
454 AACCAAAACATCAATATCGTGTA
* * * *
377517 TCCTAAAGAGAAGACTATATTTATGATGTCTAAT-CTAGAAAAGAGTGGGGATTAGTTTGACTAT
1 TCCTAAAGAGAAGACTATATTTATGGTGCCTAATCCT-GAAAAGAATGGGGATTAGTATGACTAT
* * *
377581 TCATTTTTGTCTTATTTAAGAGACAAACTTTGATTCCATAAAAAATGGTGGAAAGAATAGCTTTT
65 TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCTTTT
* *
377646 CTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGATGGGAATGTGTTTTTGGTTCCCAATC
130 CTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGAAATGTGTTTTTGGTTCCCAATC
* * *
377711 TTGAAATGAATGGAGACTGTTACGAGAATAGATGCTTGTCTTATTTAAGGGATGAACTTTGATTT
195 TTAAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTT
* *
377776 TATGGAAAATAAAGGCAAAGAAAAGATTTCCAAGC-AAA-AAAATCATCAATATCATTTATCCTA
260 TATGGAAAAT-AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTA
*
377839 ATGAGGAGAATGTGCTTATAGTGCCCAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
324 ATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
* * * * * *
377904 TAGTCTCGTTTGAGGCACGAACTTAGACTTTACAAAAATTAGTGGGAAAAATGCCATTCTTGTGA
389 TTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGA
* * *
377969 AACCGAAACATCAGTATCGCGTA
454 AACCAAAACATCAATATCGTGTA
* * * * * * * * * *
377992 TCCTAATA-AGAAGACCATGTTTACGGTGCCTAATCCTAAAAATATTGTGCATTAGAATGGCTAT
1 TCCTAA-AGAGAAGACTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTAT
*
378056 TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCTTTT
65 TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCTTTT
* * * * * * * *
378121 CTTGTGGCACCAAAGCATCAATGTCATGTATCCTATTGATGGGAATGGGGTTTTGGTACGCAATC
130 CTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGAAATGTGTTTTTGGTTCCCAATC
* * * *
378186 TTGAAACA-AATGTAGA-TGATTACAAGAATCGATGCTTGTCTTATTTAAGGGATGAACATTGAT
195 TT-AAAAAGAATGGAGACTG-TTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGAT
* *
378249 TTTATGGAAAATAAGGGCAAAGAAAAGATTTCCAAGCAAAA-AAAATCACCAATATCATTTATCC
258 TTTATGGAAAAT-AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCC
* * *
378313 TAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGGTTATTGCTAGAATCCAT
322 TAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
* * * * * * *
378378 GTTTGTATCGTTTGAGGCATG-ACTTTAAACATTACAAAAATTGGTAGGAAAAAGGCGTTTCTTG
387 GTTTGTCTCATTTGAGGCATGAAC-TTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTG
* * *
378442 TGAAACCAAAGCATTAATATCGTGTA
451 CGAAACCAAAACATCAATATCGTGTA
* * * * * *
378468 TCCTAAACAGAACAAC-ATGTTTATGGTGCCTAATCCTGAAAAGAATGAGGATTAGTGTGAGTAT
1 TCCTAAAGAGAA-GACTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTAT
* * *
378532 TCATGTTTATCTTATTTAAGAGACAAACTTTGATTCTAT-ATAAAATGGTGGAAGGAAAAGCTTT
65 TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCA-AAAATGGTGGAAAGAAAAGCTTT
* * * *
378596 TCTTGCGACACCAAAGCAACAATGTCATGCATCCTATTGAAGGGACA-GTGTTTTTGGCTCCCAA
129 TCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAA-GGAAATGTGTTTTTGGTTCCCAA
* * * * *
378660 TCTTGAAAAGAGTGGAGATTGTTATGAGAATCGATGCTTGTTTTATTTAAGGGATGAACTTTGAT
193 TCTTAAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGAT
* * *
378725 TTTATGGGAAATAAGGCAAAGAAAACATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCT
258 TTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCT
* * * * *
378790 AATGAGGAGAATGTGCTTATAGTACCTAACCAGAAAATGAATGAAGATCATTACTAGAATCCGTA
323 AATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* * * * *
378855 TTTGTCTCATTTGAGGCATGCACTTAAACTTTACAGAAATTGGTGGGAGAAAGGCCTTTCTTGCG
388 TTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCG
** *
378920 AAACCAAAGGATCAATATCATGTA
453 AAACCAAAACATCAATATCGTGTA
* * * * * *
378944 TCCTAAATAGAACAAC-ATGTTTATAGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTAC
1 TCCTAAAGAGAA-GACTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTAT
* * **
379008 TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAACCATT
65 TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCTTTT
*** * * * * * * *
379073 CCCACGACACCAAAGCTTCAATGTCATATATCCTAATGAAGTAAATATATTTTAGGTTCCCAATC
130 CTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGAAATGTGTTTTTGGTTCCCAATC
* * * *
379138 CTAAAAA-CA---AGACTGTTACGAGAATTGATGCTTGTCTTATTTAAGGGATGAAATTTGATTT
195 TTAAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTT
* *
379199 TATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAATGAAAATCATTAATATCATTTATCCTAA
260 TATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAA
** * * * *
379264 TTTGGAGAATGTGCTTATACTACCTAATCACAAAATGAATGATGACCA-T--TAGAATCCATGTT
325 TGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTT
* *
379326 TGTCTTACTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTT-TTCGCGA
390 TGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTT-GCGA
* ** *
379390 AACCAAAACATCAGTATCGCATC
454 AACCAAAACATCAATATCGTGTA
* * *
379413 TCCTAAAGAGAAGACTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTTACCATT
1 TCCTAAAGAGAAGACTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATT
* * * * * * *
379478 CATGTTTGTCTTGTTTAAGCGAAAAACTTTGATTCTATCAAAAACGGTGGAAAAAAAAGCCTTTC
66 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCTTTTC
* * * *
379543 TTGCGACACCAAAACATCAATGTCATGTATCCTAATGAAGGAAATGTGTTTTAGGTTCCCAATCC
131 TTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGAAATGTGTTTTTGGTTCCCAATCT
** * * * * *
379608 TAAAAACTATGGAGAGTATTACGAGAATCAATGCTTGTCTTATTCAAGGGATGGACTTTGATTTT
196 TAAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT
* * * *
379673 GTGAAAAAAAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTACCCTAAT
261 ATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
* * * * *
379738 GAGGAGAACGGGCTTAAAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACGCTT
326 GAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
* * * * * *
379803 GTCTCATTTGAGTCATGAACTTGGACTCTACAAAAATTGGTGGAAAAAATGCTTTTCTTAC-AAA
391 GTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAA
*
379867 TCCAAAATATCAATATCGTAG-A
456 -CCAAAACATCAATATCGT-GTA
* * * *
379889 TCCTAATGAGAAGACTA-AGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTTTAACTAT
1 TCCTAAAGAGAAGACTATA-TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTAT
* * *
379953 TCATGTTTGTCTTATCTAAGGGACAAACTTTGATTCCATCAAAAATGGTGGAAAGGAAAGCTTTT
65 TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCTTTT
* * *
380018 CTTGCAACACCAAAGCATCAATGTCATGTATCCTATTGAA-TAGAATGTGTTTTTGGTAT-CTAA
130 CTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGA-AATGTGTTTTTGGT-TCCCAA
* ** * * * *
380081 TATTGGAAAGAATGGAGATTGTTATGAGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTTAT
193 TCTTAAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGAT
* * * *
380146 TTTATGAAAAATAAGGCAAAGAAAAGACTTCCATGCAAACGAAAATCATCAATATCATTTATCC-
258 TTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCT
* * *
380210 AAGTGAGAAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGACGGTCATTACTAGAATCCAT
323 AA-TGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
* * *
380275 GTTTGTCCCATTTGAGGCTTGAACTTAGACTTTACAAAAATTGGTGGGGAAAATGCCTTTCTTGC
387 GTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGC
* * *
380340 -AAATCCAAAACTTTAATATCGCGTA
452 GAAA-CCAAAACATCAATATCGTGTA
* ** *
380365 TCCTAAAGAAAAGAAAATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGGCTATT
1 TCCTAAAGAGAAGACTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATT
* *
380430 CATGTTTGTCTTATTTAATAGACAAACTTTGATTCCATCAAAAATGGTGGAAAGAAATGCTTTTC
66 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCTTTTC
* * *
380495 TTGTGACACCAAAGCATCAATGCCATGTATCCTATTGAAGGGAATGTGTTTTTGG-T----ATCT
131 TTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGAAATGTGTTTTTGGTTCCCAATCT
* * *
380555 TGAAAAA-ATTGTAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTT
196 T-AAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTT
* * * *
380619 TATGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATAATTTCTGCTAA
260 TATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAA
* *
380684 TGA-G-GAATTTGCTTATAGTGCCTAATCACAAAATGAATGAAGATTATTA-TAGAATCCATGTT
325 TGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTT
** * * * **
380746 TGTCTCATTTGAGGCACAAACATAGACTTTACAATAATTGGTGGGAAAAGTGCCTTTCTTGTAAA
390 TGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAA
*
380811 ACCAAAGCATCAATATCGTGTA
455 ACCAAAACATCAATATCGTGTA
* * *
380833 TCCTAAACAGAAGAAC-ATGTTTATGGTGCCTAATCCTGAAAAGAATGGGCATTAGTATGACTAT
1 TCCTAAAGAGAAG-ACTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTAT
* * * * ** *
380897 TCGTGCTTGTCTTATTTAAGAGACAAACTTTTATTCTATCAAAAACAGTGGAAAGAAAAGCCTTT
65 TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCTTTT
* * * * ** * *
380962 CTTGCGACACCAAAGCTTTAATGTCATATATCTTAAAGAAGGAAATG-CTTTTAGGTTCCCAATC
130 CTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGAAATGTGTTTTTGGTTCCCAATC
* * *
381026 CTAAAAACAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAAATTTGATTT
195 TTAAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTT
* * * * * *
381091 TCTGGGAAATAGGCCAAAGAAAAGATTTTCATGAAAAAGAAAATCATCAATATCATTTATCTTAA
260 TATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAA
*
381156 TGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGATGATCATTACTAGAATCCATGTT
325 TGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTT
* * * * * *
381221 TGTCTTACTTGAGGCATGAACTTAGGCTTTGCAAAAATTGGTGGGAAAAATGCCTTTCTCGTGAA
390 TGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAA
* * *
381286 ACCAAAA-ATCAATATTGCGTC
455 ACCAAAACATCAATATCGTGTA
381307 TCCTAAAGA
1 TCCTAAAGA
381316 CAAATGGGGA
Statistics
Matches: 4555, Mismatches: 602, Indels: 132
0.86 0.11 0.02
Matches are distributed among these distances:
467 6 0.00
468 238 0.05
469 299 0.07
470 1 0.00
471 125 0.03
472 669 0.15
473 150 0.03
474 119 0.03
475 952 0.21
476 1960 0.43
477 36 0.01
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (476 bp):
TCCTAAAGAGAAGACTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATT
CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCTTTTC
TTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGAAATGTGTTTTTGGTTCCCAATCT
TAAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT
ATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
GAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
GTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAA
CCAAAACATCAATATCGTGTA
Found at i:379356 original size:952 final size:948
Alignment explanation
Indices: 374961--384227 Score: 11409
Period size: 952 Copynumber: 9.8 Consensus size: 948
374951 ACAAATGTAG
* *
374961 GGCAAAGAAAAGATTTCCAAGCAAAAAAAATCACCAACATCATTTATCCTAATGAGGAGAATGTG
1 GGCAAAGAAAAGATTTCCAAGCAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG
* * * * * * *
375026 CTTATAGTGCCTAATCACGAAGTGAATGAATATTATTACTAGAATCCATGTTAGTCTTATTTGTG
66 CTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAG
* * * *
375091 GCACGAACTTAGGCTTTACAAAAATTAGTGGG-AAAATGCCTTTCATACGAAACAAAAACATCAA
131 GCACGAACTTAGACTTTACAAAAATTAGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAA
* * * * * * *
375155 TATCGCGTATCCT-AAT-G-AGAATATGTTTACGGTGCGTAATCCTGAAAAAAATGGGGAATAGA
196 TATCGTGTATCCTAAATAGAAGAACATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGT
* * * * * * * *
375217 AAGAGTATTCAAGTTCGTCTTATTTAAGGGATAAACATTGATTCCATCAAAAATGATGGAAAGAA
261 ATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAA
** * * * *
375282 TTG-CTTTCCTTGCGACACCAAAGCATCATTGTCATGTATCCTATTGATCA-G-AATGTGGTTTT
326 AAGCCTTTCC-TACGACACCAAAGCATCAATGTCATATATCCTAATGA--AGGAAATGT-GTTTT
* *
375344 -GGTTCCCAATCTTGAAAAGA-ATGGAGACTGTTACGAGAATTGATGCTTGTCTTATTTAAGGGA
387 AGGTTCCCAATCCTGAAAA-ACA--GAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGA
* * * *
375407 TGAACTTTGTTTTTATGAAAAATAGGGCAAAGAAAAGATTTTCTTGCAAAAGAAAATCATCAATA
449 TGAAATTTGATTTTATGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATA
* *
375472 TCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATTACAAAATGAATGACGATCATTAC
514 TCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGATGATCATT-C
* *
375537 TGGAATCCATGTTTGTCTTACTTGAGGCATGAACTTAGACTTTACAAAAATTGATGGGAAAAATG
578 TAGAATCCATGTTTGTCTTACTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATG
* *
375602 CCTTTC-T--G----------------ATCGCGTCTCCTAAAGAGAAGATTATATTTATGGTGCC
643 CCTTTCTTGCGAAACCAAAACATCAATATCGCGTCTCCTAAAGAGAAAACTATATTTATGGTGCC
* * *
375648 TAATCCTGAAAAGAATGGGGATTAGTTTGACCATTCGTTTTTGTCATATTTAAGAGACAAACTTT
708 TAATCCTGAAAAGAATGGGGATTAGTTTGACCATTCATGTTTGTCTTATTTAAGAGACAAACTTT
** * *
375713 GATTCCATCAAAAACAGTGGAAAGAATAGATTTTCTTGCGACACCAAAGCATCAATGTCATGTAT
773 GATTCCATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAT
* * * *
375778 CCTATTGATGGGAATGTGTTTTTGATTCCCAATCTTGAAAAGAATGGAGACTATTACAAGAATCG
838 CCTATTGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCG
*
375843 ATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATAGAAAATAA
903 ATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAA
** * *
375889 GGGCAAAGAAAAGATTTTGAAGCGAAAAAAATCATCAATATCATTTA-CCTTAATGAGGAGAATC
1 -GGCAAAGAAAAGATTTCCAAGCAAAAAAAATCATCAATATCATTTATCC-TAATGAGGAGAATG
* * * * ***
375953 TGCTTATAGTGCCTAATCAGAAAATGAATGATGACCATTACAAGAATCCATGTTTGTCAGTTTTG
64 TGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG
* * *
376018 AGGCATGAACTTAGATTTTACAAAAATTAGTGGGAAAAATGCCATTCTTGCGAAACCAAAACATC
129 AGGCACGAACTTAGACTTTACAAAAATTAGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATC
** * * * * *
376083 AATATCGCATATCCTAAAAAGAAG-ACTATATTTATGATGCCTAATACTGAAAAAAATGGGGATT
194 AATATCGTGTATCCTAAATAGAAGAAC-ATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATT
* * * * * * * * *
376147 AGTTTAACTATTCATGTTTGTGTTATTTAAAAAACAAACTTTGATTCCATCAAAAACGTTGGAAA
258 AGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAA
* * * * * * * *
376212 GAATAGCTTTTCTTACGGCACCAAAGCATCAATGTCA-AGTGTCCTATTGATGGGAATGTGTTTT
323 GAAAAGCCTTTCCTACGACACCAAAGCATCAATGTCATA-TATCCTAATGAAGGAAATGTGTTTT
* *
376276 -GGTTCCCAATCTTGAAAAGA-ATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTATGGGA
387 AGGTTCCCAATCCTGAAAA-ACA--GAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGA
* * * * *
376339 TGAACTTTGATTTTATGGAAAATATGAGCAAAGAAAATATTTCCAAGC-AAAGAAAATCATCAAT
449 TGAAATTTGATTTTATGAAAAATA-GGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAAT
* * * *
376403 ATCATTTATCCTAATAAGGAGAATGTGCTTACAGTGCCTAATCACAAAATGAATAAAGATCATTA
513 ATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGATGATCATT-
* * * * * **
376468 CTAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAATAATTGGAAGGAAAAAT
577 CTAGAATCCATGTTTGTCTTACTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAT
* * * * * * *
376533 GCCTTTCTTGCGAAGCCAAAGCCTTAATATCGTGTATCCTAATA-AGAAGACTA-AGTTTATGGT
642 GCCTTTCTTGCGAAACCAAAACATCAATATCGCGTCTCCTAA-AGAGAAAACTATA-TTTATGGT
* * ** * *
376596 GCCTAATCCTGAAAAGAAGGGGGATTAGTATGAGTATTCATGTTTGTCTTATTCAACAGACAAAC
705 GCCTAATCCTGAAAAGAATGGGGATTAGTTTGACCATTCATGTTTGTCTTATTTAAGAGACAAAC
*
376661 TTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATG
770 TTTGATTCCATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATG
* * *
376726 CATCCTATTGAAGGGACA-GTGTTTTTGGCTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGA
835 TATCCTATTGAAGGGA-ATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGA
*
376790 ATCGATGCTTGTCTTATTTAAAGGATGAACTTTGATTTTATGGAAAATAA
899 ATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAA
* * * * * *
376840 GGTAAAGAAAAGATTTCCACG-AAAAAAAATCATCAATATCATTTTTCTTAAT-ACG-GAATATG
1 GGCAAAGAAAAGATTTCCAAGCAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG
* *
376902 CTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATATTTGTCTCATTTGAG
66 CTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAG
* * ** * *
376967 GCACGAACTTAGACTTTACAATAATTGGAAGGAAAAATGCCTTTCTTGCGAAGCCAAAGCATCAA
131 GCACGAACTTAGACTTTACAAAAATTAGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAA
* *
377032 TATCGTGTATCCT-AATAAGAAG-ACTAAGTTTATGGTGCCTAATCCTGAAACGAATGGGGATTA
196 TATCGTGTATCCTAAAT-AGAAGAAC-ATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTA
* *
377095 GTATGAGTACTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAG
259 GTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAG
* * * * **
377160 AAAAGCCTTTCTTGCGACACCAAAGCATCAATATCATGTATCCTAATGAAGGAAACATGTTTTAG
324 AAAAGCCTTTCCTACGACACCAAAGCATCAATGTCATATATCCTAATGAAGGAAATGTGTTTTAG
* * * *
377225 GTTCCCAATCCT-AAAAACTATGGAGAGTATTACGAGAATCAATGCTTGTCTTATTCAAGGGATG
389 GTTCCCAATCCTGAAAAAC-A--GAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATG
* * * *
377289 GACTTTGATTTTGTGAAAAATAGGGTAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
451 AAATTTGATTTTATGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* *
377354 ATTTACCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
516 ATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGATGATCATT-CTA
* * * * *
377419 GAATCCACGCTTGTCTCATTTGAGGCATGAACTTAGACTATACAAAAATTGGTGGGAAAAATGCC
580 GAATCCATGTTTGTCTTACTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCC
** * * ** * * * *
377484 TTTCTCACGAAACCAAAACATCATTGTCATGCCTCCTAAAGAGAAGACTATATTTATGATGTCTA
645 TTTCTTGCGAAACCAAAACATCAATATCGCGTCTCCTAAAGAGAAAACTATATTTATGGTGCCTA
* * *
377549 AT-CTAGAAAAGAGTGGGGATTAGTTTGACTATTCATTTTTGTCTTATTTAAGAGACAAACTTTG
710 ATCCT-GAAAAGAATGGGGATTAGTTTGACCATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
* *
377613 ATTCCATAAAAAATGGTGGAAAGAATAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
774 ATTCCATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
* * *
377678 CTATTGATGGGAATGTGTTTTTGGTTCCCAATCTTGAAATGAATGGAGACTGTTACGAGAATAGA
839 CTATTGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGA
377743 TGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAA
904 TGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAAT-AA
377789 GGCAAAGAAAAGATTTCCAAGC-AAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG
1 GGCAAAGAAAAGATTTCCAAGCAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG
* * *
377853 CTTATAGTGCCCAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTAGTCTCGTTTGAG
66 CTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAG
* * * *
377918 GCACGAACTTAGACTTTACAAAAATTAGTGGGAAAAATGCCATTCTTGTGAAACCGAAACATCAG
131 GCACGAACTTAGACTTTACAAAAATTAGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAA
* * * * * * * *
377983 TATCGCGTATCCT-AATAAGAAGACCATGTTTACGGTGCCTAATCCTAAAAATATTGTGCATTAG
196 TATCGTGTATCCTAAAT-AGAAGAACATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAG
* * *
378047 AATG-GCTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAG
260 TATGAG-TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAG
* * ** * * * * * *
378111 AAAAGCTTTTCTTGTGGCACCAAAGCATCAATGTCATGTATCCTATTGATGGGAATGGGGTTTT-
324 AAAAGCCTTTCCTACGACACCAAAGCATCAATGTCATATATCCTAATGAAGGAAAT-GTGTTTTA
* * * *
378175 GGTACGCAATCTTGAAACAA-ATGTAGA-TGATTACAAGAATCGATGCTTGTCTTATTTAAGGGA
388 GGTTCCCAATCCTGAAA-AACA-G-AGACTG-TTACGAGAATCGATGCTTGTCTTATTTAAGGGA
* * *
378238 TGAACA-TTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCAAGCAAAA-AAAATCACCAA
449 TGAA-ATTTGATTTTATGAAAAAT-AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAA
* * *
378301 TATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGGTTATT
512 TATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGATGATCATT
* *** * * *
378366 GCTAGAATCCATGTTTGTATCGTTTGAGGCATG-ACTTTAAACATTACAAAAATTGGTAGGAAAA
577 -CTAGAATCCATGTTTGTCTTACTTGAGGCATGAAC-TTAGACTTTACAAAAATTGGTGGGAAAA
* * * * * * * * *
378430 AGGCGTTTCTTGTGAAACCAAAGCATTAATATCGTGTATCCTAAACAGAACAAC-ATGTTTATGG
640 ATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTCTCCTAAAGAGAA-AACTATATTTATGG
* * ** *
378494 TGCCTAATCCTGAAAAGAATGAGGATTAGTGTGAGTATTCATGTTTATCTTATTTAAGAGACAAA
704 TGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACCATTCATGTTTGTCTTATTTAAGAGACAAA
* * *
378559 CTTTGATTCTAT-ATAAAATGGTGGAAGGAAAAGCTTTTCTTGCGACACCAAAGCAACAATGTCA
769 CTTTGATTCCATCA-AAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCA
* * * * *
378623 TGCATCCTATTGAAGGGACA-GTGTTTTTGGCTCCCAATCTTGAAAAGAGTGGAGATTGTTATGA
833 TGTATCCTATTGAAGGGA-ATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGA
* *
378687 GAATCGATGCTTGTTTTATTTAAGGGATGAACTTTGATTTTATGGGAAATAA
897 GAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAA
* *
378739 GGCAAAGAAAACATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
1 GGCAAAGAAAAGATTTCCAAGCAAAA-AAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
* * * * *
378804 GCTTATAGTACCTAACCAGAAAATGAATGAAGATCATTACTAGAATCCGTATTTGTCTCATTTGA
65 GCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA
* * * * * * * **
378869 GGCATGCACTTAAACTTTACAGAAATTGGTGGGAGAAAGGCCTTTCTTGCGAAACCAAAGGATCA
130 GGCACGAACTTAGACTTTACAAAAATTAGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCA
* * *
378934 ATATCATGTATCCTAAATAGAACAACATGTTTATAGTGCCTAATCCTGAAAAGAATGGGGATTAG
195 ATATCGTGTATCCTAAATAGAAGAACATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAG
*
378999 TATGAGTACTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGA
260 TATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGA
* * * * * * *
379064 AAAACCATTCCCACGACACCAAAGCTTCAATGTCATATATCCTAATGAAGTAAATATATTTTAGG
325 AAAGCCTTTCCTACGACACCAAAGCATCAATGTCATATATCCTAATGAAGGAAATGTGTTTTAGG
*
379129 TTCCCAATCCT-AAAAACA-AGACTGTTACGAGAATTGATGCTTGTCTTATTTAAGGGATGAAAT
390 TTCCCAATCCTGAAAAACAGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAAAT
* * *
379192 TTGATTTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAATGAAAATCATTAATATCATTT
455 TTGATTTTATGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTT
** * * *
379257 ATCCTAATTTGGAGAATGTGCTTATACTACCTAATCACAAAATGAATGATGACCA-T-TAGAATC
520 ATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGATGATCATTCTAGAATC
379320 CATGTTTGTCTTACTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTT-T
585 CATGTTTGTCTTACTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCT
* * *
379384 TCGCGAAACCAAAACATCAGTATCGCATCTCCTAAAGAGAAGACTATATTTATGGTGCCTAATCC
650 T-GCGAAACCAAAACATCAATATCGCGTCTCCTAAAGAGAAAACTATATTTATGGTGCCTAATCC
* * * * *
379449 TGAAAAGAATGGGGATTAGTTTTACCATTCATGTTTGTCTTGTTTAAGCGAAAAACTTTGATTCT
714 TGAAAAGAATGGGGATTAGTTTGACCATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCC
* * * * *
379514 ATCAAAAACGGTGGAAAAAAAAGCCTTTCTTGCGACACCAAAACATCAATGTCATGTATCCTAAT
779 ATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATT
* * * * ** * * *
379579 GAAGGAAATGTGTTTTAGGTTCCCAATCCTAAAAACTATGGAGAGTATTACGAGAATCAATGCTT
844 GAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTT
* * * *
379644 GTCTTATTCAAGGGATGGACTTTGATTTTGT-GAAAAAAA
909 GTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAA
* * *
379683 GGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTACCCTAATGAGGAGAACG
1 -GGCAAAGAAAAGATTTCCAAGCAAAA-AAAATCATCAATATCATTTATCCTAATGAGGAGAATG
* * * *
379748 GGCTTAAAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCACGCTTGTCTCATTTG
64 TGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG
* * * * * * * * *
379813 AGTCATGAACTTGGACTCTACAAAAATTGGTGGAAAAAATGCTTTTCTTAC-AAATCCAAAATAT
129 AGGCACGAACTTAGACTTTACAAAAATTAGTGGGAAAAATGCCTTTCTTGCGAAA-CCAAAACAT
* *
379877 CAATATCGTAG-ATCCT-AATGAGAAG-ACTAAGTTTATGGTGCCTAATCTTGAAAAGAATGGGG
193 CAATATCGT-GTATCCTAAAT-AGAAGAAC-ATGTTTATGGTGCCTAATCCTGAAAAGAATGGGG
* * * * * *
379939 ATTAGTTTAACTATTCATGTTTGTCTTATCTAAGGGACAAACTTTGATTCCATCAAAAATGGTGG
255 ATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGG
* * * * * * * *
380004 AAAGGAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTATTGAA-TAGAATGTGT
320 AAAGAAAAGCCTTTCCTACGACACCAAAGCATCAATGTCATATATCCTAATGAAGGA-AATGTGT
* * ** ** * * *
380068 TTTTGGTAT-CTAATATTGGAAAGAATGGAGATTGTTATGAGAATCAATGCTTGTCTTATTTAAG
384 TTTAGGT-TCCCAATCCT-GAAA-AACAGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAG
* * * * *
380132 GGATGAACTTTTATTTTATGAAAAATAAGGCAAAGAAAAGACTTCCATGCAAACGAAAATCATCA
446 GGATGAAATTTGATTTTATGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCA
* * *
380197 ATATCATTTATCC-AAGTGAGAAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGACGGTCA
511 ATATCATTTATCCTAA-TGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGATGATCA
** * * *
380261 TTACTAGAATCCATGTTTGTCCCATTTGAGGCTTGAACTTAGACTTTACAAAAATTGGTGGGGAA
575 TT-CTAGAATCCATGTTTGTCTTACTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAA
* * * **
380326 AATGCCTTTCTTGC-AAATCCAAAACTTTAATATCGCGTATCCTAAAGA-AAAGAAAATATTTAT
639 AATGCCTTTCTTGCGAAA-CCAAAACATCAATATCGCGTCTCCTAAAGAGAAA-ACTATATTTAT
* * * *
380389 GGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGGCTATTCATGTTTGTCTTATTTAATAGACA
702 GGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACCATTCATGTTTGTCTTATTTAAGAGACA
* * *
380454 AACTTTGATTCCATCAAAAATGGTGGAAAGAAATGCTTTTCTTGTGACACCAAAGCATCAATGCC
767 AACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC
* *
380519 ATGTATCCTATTGAAGGGAATGTGTTTTTGG-T----ATCTTGAAAA-AATTGTAGATTGTTACG
832 ATGTATCCTATTGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAA-TGGAGACTGTTACG
380578 AGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAA
896 AGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAA
* * * * *
380631 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATAATTTCTGCTAATGA-G-GAATTT
1 GGCAAAGAAAAGATTTCCAAGCAAAA-AAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
*
380694 GCTTATAGTGCCTAATCACAAAATGAATGAAGATTATTA-TAGAATCCATGTTTGTCTCATTTGA
65 GCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA
* * * * * ** *
380758 GGCACAAACATAGACTTTACAATAATTGGTGGGAAAAGTGCCTTTCTTGTAAAACCAAAGCATCA
130 GGCACGAACTTAGACTTTACAAAAATTAGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCA
* *
380823 ATATCGTGTATCCTAAACAGAAGAACATGTTTATGGTGCCTAATCCTGAAAAGAATGGGCATTAG
195 ATATCGTGTATCCTAAATAGAAGAACATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAG
* * * * **
380888 TATGACTATTCGTGCTTGTCTTATTTAAGAGACAAACTTTTATTCTATCAAAAACAGTGGAAAGA
260 TATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGA
* * * * * * *
380953 AAAGCCTTTCTTGCGACACCAAAGCTTTAATGTCATATATCTTAAAGAAGGAAATG-CTTTTAGG
325 AAAGCCTTTCCTACGACACCAAAGCATCAATGTCATATATCCTAATGAAGGAAATGTGTTTTAGG
381017 TTCCCAATCCT-AAAAACAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
390 TTCCCAATCCTGAAAAAC-A--GAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
* ** * * *
381081 AATTTGATTTTCTGGGAAATAGGCCAAAGAAAAGATTTTCATGAAAAAGAAAATCATCAATATCA
452 AATTTGATTTTATGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCA
*
381146 TTTATCTTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGATGATCATTACTAG
517 TTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGATGATCATT-CTAG
* *
381211 AATCCATGTTTGTCTTACTTGAGGCATGAACTTAGGCTTTGCAAAAATTGGTGGGAAAAATGCCT
581 AATCCATGTTTGTCTTACTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCT
* * *
381276 TTCTCGTGAAACCAAAA-ATCAATATTGCGTCT-C-----------CTA-A---A----G----A
646 TTCTTGCGAAACCAAAACATCAATATCGCGTCTCCTAAAGAGAAAACTATATTTATGGTGCCTAA
* *
381316 --C-----A-AATGGGGATTAGTTTGACCATTCATGTTTGTCTTCTTTAAAAGACAAACTTTGAT
711 TCCTGAAAAGAATGGGGATTAGTTTGACCATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
*
381373 TCCATCAAAAATGGTGGAAAGAATAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT
776 TCCATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT
* *
381438 ATT-AATGGGAATGTGTTTTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATAGAT
841 ATTGAA-GGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGAT
381502 GCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAA
905 GCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAA
* * *
381546 GGGCAAAGAAAAGATTTCGAAGCAAAAAAAATCATCAATATCATTTATCCTGATGAGGAGAATAT
1 -GGCAAAGAAAAGATTTCCAAGCAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
* * *
381611 GCTTATAGTACCTGATCACAAAATGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTTGA
65 GCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA
* * *
381676 TGCATGAACTTAAACTTTACAAAAATTAGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCA
130 GGCACGAACTTAGACTTTACAAAAATTAGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCA
* * * * *
381741 ATATCGTGTATCCTAAAGAGAAGAACATTTTTGTGATGCCTAATCCTGAAAAAAATGGGGATTAG
195 ATATCGTGTATCCTAAATAGAAGAACATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAG
* * * * * * **
381806 TTTGTGTATTCAAGTTTGTTTTATTTGAGAGACAAACTTTGATTCTATAAAAAATGGCAGAAAGA
260 TATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGA
* * * *
381871 AAAG-CTTTTCTAGCGACACCAAAGCATCAATGTCATACATCTTAATGAAGGAAATGGGTTTTAG
325 AAAGCCTTTCCTA-CGACACCAAAGCATCAATGTCATATATCCTAATGAAGGAAATGTGTTTTAG
* * * ** * *
381935 GTTCCAAATCCT-AAAATCAATGGAGATTGTTGTGAGAATCGATGCTTGTCTTTTTTGAGGGATG
389 GTTCCCAATCCTGAAAAAC-A--GAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATG
*
381999 AAATTTGATTTTATGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAGTATC
451 AAATTTGATTTTATGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
*
382064 ATTTATCTTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGATGATCATTACTA
516 ATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGATGATCATT-CTA
* *
382129 GAATCCATGTTTGTCTTACTTAAGGCATGAACTTAGACTTTGCAAAAATTGGTGGGAAAAATGCC
580 GAATCCATGTTTGTCTTACTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCC
* * * * * *
382194 TTTCTCGTGAAACCAAAGCATCAATATTGCGTCTCCTAAAGAGAAGACTATATCTATGGTGCCTA
645 TTTCTTGCGAAACCAAAACATCAATATCGCGTCTCCTAAAGAGAAAACTATATTTATGGTGCCTA
* * *
382259 ATCCTAAAAAGAATGGGGATTAGTTTGACCATTCATGTTTGTCTTCTTTAAAAGACAAACTTTGA
710 ATCCTGAAAAGAATGGGGATTAGTTTGACCATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* * * *
382324 TTCCATCAAAAACGG-GAGAAAGAATAGTTTTTCTTGCAACACCAAAGCATCAATGTCATGTATC
775 TTCCATCAAAAATGGTG-GAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
* *
382388 CTATTGATGGGAATTTGTTTTT-G-TCCCTAATCTTGAAAAGAATGGAGACTGTTACGAGAATCG
839 CTATTGAAGGGAATGTGTTTTTGGTTCCC-AATCTTGAAAAGAATGGAGACTGTTACGAGAATCG
382451 ATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAA
903 ATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAA
*
382497 GGGCAAAGAAAAGATTTCCAAGCAAAAAAAAATCATCAATATCATTTATCCTGATGAGGAGAATG
1 -GGCAAAGAAAAGATTTCCAAGC-AAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATG
* * * * *
382562 TGCTTATAGTGACTAATCACAAAATGAAGGAAGATCATTTCTAGAATCCATGTTAGTCTCATTTA
64 TGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG
* *
382627 AGGCACGAACTTAGACTTTACAAAAATTAGTGAGAAAAATGCCTTTCTTGTGAAACCAAAACATC
129 AGGCACGAACTTAGACTTTACAAAAATTAGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATC
* * * * *
382692 AATATCGTGTATCCTAAAGAGAAGAACATTTTTGTGATGCCTAATCCTGAAAAAAATGGGGATTA
194 AATATCGTGTATCCTAAATAGAAGAACATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTA
* * * * * *
382757 GTTTGTGTATTCAAGTTTGTTTTATTTAAGAGACAAACTTTGATTCTATAAAAAATGGCGGAAAG
259 GTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAG
* * ** * *
382822 AAAAG-CTTTTCTAGTGACACTGAAGCATCAATGTCATATATCTTAATGAAGGAAATGGGTTTTA
324 AAAAGCCTTTCCTA-CGACACCAAAGCATCAATGTCATATATCCTAATGAAGGAAATGTGTTTTA
* * * * * *
382886 GGTTCCAAATCCT-AAAATAAATGGAGACTGTTGCGAGAATCGAGGCTTGTCTTTTTTGAGGGAT
388 GGTTCCCAATCCTGAAAA-ACA--GAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGAT
*
382950 GAAATTTGATTTTATGAAAAATAGGACAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATAT
450 GAAATTTGATTTTATGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATAT
*
383015 CATTTATCTTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGATGATCATTACT
515 CATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGATGATCATT-CT
* * * *
383080 AGAATCAATGTTTGTCTTACTAGAGGCATGAACTTAGACTTTACAAAAATTAGTGGGGAAAATGC
579 AGAATCCATGTTTGTCTTACTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGC
* ** * *
383145 TTTTCTCACGAAACCAAAGCATCAATATCGCGTCTCCTAAAGAGAAGACTATATTTATGGTGCCT
644 CTTTCTTGCGAAACCAAAACATCAATATCGCGTCTCCTAAAGAGAAAACTATATTTATGGTGCCT
*
383210 AATCCTGAAAAAAATGGGGATTAGTTTGACCATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
709 AATCCTGAAAAGAATGGGGATTAGTTTGACCATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
* *
383275 ATTCCTTCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
774 ATTCCATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
* * * * * * * * * *
383340 CTATTGAAGAGATTATGCTTTTGGTACCAAATCTTGAAAAGAATGCAGATTGTTGCGAGAATCAA
839 CTATTGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGA
* * *
383405 TGTTTGTCTTATTTAAGAGATGAACTTTGATTTTATGGAAAATAG
904 TGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAA
* * * *
383450 GGTAAAGAAAAGATTTCGATA-CAAAAGAAAGTCATCAATATCATTTATCCTAATGAGAAGAATG
1 GGCAAAGAAAAGATTTCCA-AGCAAAA-AAAATCATCAATATCATTTATCCTAATGAGGAGAATG
*
383514 TGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTGGAATCCATGTTTGTCTCATTTG
64 TGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG
* * * * * *
383579 ATGCACAAACTTAAACTTTACAAGAATTGGTGGGAGAAATGCCTTTCTTGCGAAACCAAAACATC
129 AGGCACGAACTTAGACTTTACAAAAATTAGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATC
* * * *
383644 AATATCGTGTATCCTAAAAAGAAGAAAATTTTTATGGTGCCTAATCCGGAAAAGAATGGGGATTA
194 AATATCGTGTATCCTAAATAGAAGAACATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTA
* * * * *
383709 GTATGTGTATTCAAGTTTATTTTATTTGAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAG
259 GTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAG
* * * * * * * *
383774 AAAAG-CTTTTCTAGCGACACTAGAGCATCAATGTCATGTATCCTATTAAAGGGAATGTGTTTTT
324 AAAAGCCTTTCCTA-CGACACCAAAGCATCAATGTCATATATCCTAATGAAGGAAATGTGTTTTA
* ** * * * *
383838 GGTTCCCAATCATGAAAAGAGTGGACACTATTACGAGAATCAATGCTTGTCTTATTTAAGGGAGG
388 GGTTCCCAATCCTGAAAA-A-CAGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATG
* * * * * * *
383903 AACTTTTAGTTTATGCAAAGTAGGGCAAAGAAAAGATTTCCTTGTAAAAGAAAATCATCAATATC
451 AAATTTGATTTTATGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
** *
383968 ATTTATCCTAGA-GAGGAGAATGTGCTTATAGCACCTAATCACAAAATGAATGATGACCATTACT
516 ATTTATCCTA-ATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGATGATCATT-CT
* *
384032 AGAATCAATGTTTGTCCTT--TTGCA-GCATGAACTTAGACTTTACAAATATTGGTGGGAAAAAT
579 AGAATCCATGTTTGT-CTTACTTG-AGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAT
* * * *
384094 GCCATTCTTGCGAAACCAAAACATCAATATCGCATATCCTAAAGA-AAAGACTATATTTATGATG
642 GCCTTTCTTGCGAAACCAAAACATCAATATCGCGTCTCCTAAAGAGAAA-ACTATATTTATGGTG
* * * *
384158 CCTAATCCAGAAAAGAATGGGGATTGGTTTGACTATTCATGTTTCTCTTATTTAAGAG--AAACT
706 CCTAATCCTGAAAAGAATGGGGATTAGTTTGACCATTCATGTTTGTCTTATTTAAGAGACAAACT
384221 TTGATTC
771 TTGATTC
384228 TAATGAGAAC
Statistics
Matches: 7274, Mismatches: 895, Indels: 318
0.86 0.11 0.04
Matches are distributed among these distances:
909 2 0.00
910 129 0.02
911 2 0.00
915 99 0.01
916 28 0.00
917 46 0.01
918 232 0.03
919 266 0.04
920 15 0.00
921 1 0.00
922 1 0.00
926 1 0.00
928 2 0.00
929 138 0.02
930 41 0.01
931 2 0.00
932 233 0.03
933 144 0.02
934 4 0.00
935 1 0.00
936 1 0.00
940 3 0.00
941 4 0.00
942 12 0.00
943 234 0.03
944 249 0.03
945 674 0.09
946 11 0.00
947 442 0.06
948 603 0.08
949 233 0.03
950 58 0.01
951 1239 0.17
952 2027 0.28
953 95 0.01
954 2 0.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (948 bp):
GGCAAAGAAAAGATTTCCAAGCAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG
CTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAG
GCACGAACTTAGACTTTACAAAAATTAGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAA
TATCGTGTATCCTAAATAGAAGAACATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGT
ATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAA
AAGCCTTTCCTACGACACCAAAGCATCAATGTCATATATCCTAATGAAGGAAATGTGTTTTAGGT
TCCCAATCCTGAAAAACAGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAAATT
TGATTTTATGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTA
TCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGATGATCATTCTAGAATCC
ATGTTTGTCTTACTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTT
GCGAAACCAAAACATCAATATCGCGTCTCCTAAAGAGAAAACTATATTTATGGTGCCTAATCCTG
AAAAGAATGGGGATTAGTTTGACCATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCAT
CAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGA
AGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGT
CTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAA
Found at i:382143 original size:159 final size:157
Alignment explanation
Indices: 381504--383577 Score: 620
Period size: 159 Copynumber: 13.1 Consensus size: 157
381494 GAATAGATGC
* * * *
381504 TTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCGAAGC
1 TTGTCTTATTTAAGGGATGAAATTTGATTTTATGAAAAAT-AGGGCAAAGAAAAGATTTCCATGC
* * * * * *
381569 AAAA-AAAATCATCAATATCATTTATCCTGATGAGGAGAATATGCTTATAGTACCTGATCACAAA
65 AAAACAAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATC-CAAA
*
381633 ATGAATGAAGATCATTACTAGAATCCATAT
129 ATGAATG-AGATCATTACTAGAATCCATGT
* * * * * ** * * * * * *
381663 TTGTCTCATTTGATGCATGAACTTAAACTTTA-CAAAAATTAGTGG-GAA-AAATGCCTTT-CTT
1 TTGTCTTATTTAAGGGATGAAATTTGATTTTATGAAAAA-TAG-GGCAAAGAAAAG-ATTTCCAT
* * * * ** ** *
381724 GCGAAACCAAAA-CATCAATATCGTGTATCCTAAAGAGAAGAACATTTTTGT-GATGCCTAATCC
63 GC-AAAACAAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGCTTATAG-TGCCTAATCC
* * * ** * * *
381787 TGAAAA-AAATGGGGATTAGTTTGT-GTATTCAAGT
126 --AAAATGAAT-GAGATCA-TTACTAGAATCCATGT
* * * * * * * *
381821 TTGTTTTATTTGAGAGA-CAAACTTTGATTCTAT-AAAAA-ATGGCAGAAAGAAAAGCTTTTC-T
1 TTGTCTTATTTAAGGGATGAAA-TTTGATTTTATGAAAAATAGGGC--AAAGAAAAGATTTCCAT
* * * * ** * * * * *
381882 AGCGACACCAAAGCATCAATGTCATACATCTTAATGAAGGA-AATG-GGTTTTAGGTTCCAAATC
63 -GCAAAACAAAAGCATCAATATCATGTATCCTAATG-AGGAGAATGTGCTTATA-GTGCCTAATC
* ** * * *
381945 CTAAAATCAATGGAGATTGTT-GTGAGAATCGATGC
125 C-AAAATGAAT-GAGATCATTACT-AGAATCCATGT
* *
381980 TTGTCTTTTTTGAGGGATGAAATTTGATTTTATGAAAAATAGGGCAAAGAAAAGATTTCCATGCA
1 TTGTCTTATTTAAGGGATGAAATTTGATTTTATGAAAAATAGGGCAAAGAAAAGATTTCCATGCA
* * * * *
382045 AAAGAAAATCATCAGTATCATTTATCTTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAA
66 AAACAAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATC-CAAAA
382110 TGAATGATGATCATTACTAGAATCCATGT
130 TGAATGA-GATCATTACTAGAATCCATGT
* * * * * * ** * * *
382139 TTGTCTTACTTAAGGCATGAACTTAGA-CTT-TGCAAAAATTGGTGGGAA-AAATGCCTTTCTCG
1 TTGTCTTATTTAAGGGATGAAATTTGATTTTATG-AAAAATAGG-GCAAAGAAAAG-ATTTC-CA
* *** * * * * *
382201 TG--AAACCAAAGCATCAATATTGCGTCTCCTAAAGAGAAGACTATAT-C-TATGGTGCCTAATC
62 TGCAAAACAAAAGCATCAATATCATGTATCCTAATGAGGAGA--ATGTGCTTATAGTGCCTAATC
* * * *
382262 CTAAAAAGAATGGGGATTAGTT--T-GACCATTCATGT
125 C-AAAATGAAT-GAGATCA-TTACTAGA--ATCCATGT
* ** * ** * * * * * * *
382297 TTGTCTTCTTTAAAAGA-CAAACTTTGATTCCATCAAAAA-CGGGAGAAAGAATAGTTTTTCTTG
1 TTGTCTTATTTAAGGGATGAAA-TTTGATTTTATGAAAAATAGGG-CAAAGAAAAGATTTCCATG
* * * * * * * * *
382360 CAACACCAAAGCATCAATGTCATGTATCCTATTGATGG-GAATTTG-TTTTTGTCCCTAATCTTG
64 CAAAACAAAAGCATCAATATCATGTATCCTAATGA-GGAGAATGTGCTTATAGTGCCTAATC--C
* * * *
382423 AAAA-GAATGGAGA-CTGTTACGAGAATCGATGC
126 AAAATGAAT-GAGATC-ATTACTAGAATCCATGT
* * *
382455 TTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCAAGC
1 TTGTCTTATTTAAGGGATGAAATTTGATTTTATGAAAAAT-AGGGCAAAGAAAAGATTTCCATGC
* * * * *
382520 AAAAAAAAATCATCAATATCATTTATCCTGATGAGGAGAATGTGCTTATAGTGACTAATCACAAA
65 AAAACAAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATC-CAAA
* *
382585 ATGAAGGAAGATCATTTCTAGAATCCATGT
129 ATGAATG-AGATCATTACTAGAATCCATGT
* * * * * * * * * * * *
382615 TAGTCTCATTTAAGGCACGAACTTAGACTTTA-CAAAAATTAGTG-AGAA-AAATGCCTTT-CTT
1 TTGTCTTATTTAAGGGATGAAATTTGATTTTATGAAAAA-TAGGGCA-AAGAAAAG-ATTTCCAT
* * * * * ** ** *
382676 GTGAAACCAAAA-CATCAATATCGTGTATCCTAAAGAGAAGAACATTTTTGT-GATGCCTAATCC
63 G-CAAAACAAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGCTTATAG-TGCCTAATCC
* * * ** * * *
382739 TGAAAA-AAATGGGGATTAGTTTGT-GTATTCAAGT
126 --AAAATGAAT-GAGATCA-TTACTAGAATCCATGT
* * * * * * * *
382773 TTGTTTTATTTAAGAGA-CAAACTTTGATTCTATAAAAAAT-GGCGGAAAGAAAAGCTTTTCTAG
1 TTGTCTTATTTAAGGGATGAAA-TTTGATTTTATGAAAAATAGG-GCAAAGAAAAG-ATTTCCA-
* ** * * * * * * *
382836 TG--ACACTGAAGCATCAATGTCATATATCTTAATGAAGGA-AATG-GGTTTTAGGTTCCAAATC
62 TGCAAAACAAAAGCATCAATATCATGTATCCTAATG-AGGAGAATGTGCTTATA-GTGCCTAATC
* * * * * * *
382897 CTAAAATAAATGGAGA-CTGTTGCGAGAATCGAGGC
125 C-AAAATGAAT-GAGATC-ATTACTAGAATCCATGT
* * *
382932 TTGTCTTTTTTGAGGGATGAAATTTGATTTTATGAAAAATAGGACAAAGAAAAGATTTCCATGCA
1 TTGTCTTATTTAAGGGATGAAATTTGATTTTATGAAAAATAGGGCAAAGAAAAGATTTCCATGCA
* * * *
382997 AAAGAAAATCATCAATATCATTTATCTTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAA
66 AAACAAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATC-CAAAA
*
383062 TGAATGATGATCATTACTAGAATCAATGT
130 TGAATGA-GATCATTACTAGAATCCATGT
* * * * * * * *
383091 TTGTCTTA-CTAGAGGCATGAACTTAGACTTTA-CAAAAATTAGTGG---GGAAAATGCTTTTCT
1 TTGTCTTATTTA-AGGGATGAAATTTGATTTTATGAAAAA-TAG-GGCAAAGAAAA-G-ATTTC-
* * ** * * * * * ** *
383151 CA--CGAAACCAAAGCATCAATATCGCGTCTCCTAAAGAGAAGACTATATTTATGGTGCCTAATC
60 CATGCAAAACAAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATC
* * * *
383214 CTGAAAA-AAATGGGGATTAGTT--T-GACCATTCATGT
125 C--AAAATGAAT-GAGATCA-TTACTAGA--ATCCATGT
* * * * * * * * *
383249 TTGTCTTATTTAAGAGA-CAAACTTTGATTCCT-TCAAAAA-CGGTGGAAAGAAAAGCTTTTCTT
1 TTGTCTTATTTAAGGGATGAAA-TTTGATT-TTATGAAAAATAGG-GCAAAGAAAAGATTTCCAT
* * * * * * * * * * * * *
383311 GCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGAGATTATGCTTTTGGTACCAAATCTTG
63 GCAAAACAAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATC--C
** * * *
383376 AAAA-GAATGCAGATTGTTGCGAGAATCAATGT
126 AAAATGAATG-AGATCATTACTAGAATCCATGT
* * * * * *
383408 TTGTCTTATTTAAGAGATGAACTTTGATTTTATGGAAAATAGGGTAAAGAAAAGATTTCGATACA
1 TTGTCTTATTTAAGGGATGAAATTTGATTTTATGAAAAATAGGGCAAAGAAAAGATTTCCATGCA
* * *
383473 AAA-GAAAGTCATCAATATCATTTATCCTAATGAGAAGAATGTGCTTATAGTGCCTAATCACAAA
66 AAACAAAAG-CATCAATATCATGTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATC-CAAA
*
383537 ATGAATGAAGATCATTACTGGAATCCATGT
129 ATGAATG-AGATCATTACTAGAATCCATGT
*
383567 TTGTCTCATTT
1 TTGTCTTATTT
383578 GATGCACAAA
Statistics
Matches: 1357, Mismatches: 424, Indels: 268
0.66 0.21 0.13
Matches are distributed among these distances:
155 2 0.00
156 6 0.00
157 46 0.03
158 463 0.34
159 714 0.53
160 117 0.09
161 9 0.01
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (157 bp):
TTGTCTTATTTAAGGGATGAAATTTGATTTTATGAAAAATAGGGCAAAGAAAAGATTTCCATGCA
AAACAAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCCAAAAT
GAATGAGATCATTACTAGAATCCATGT
Found at i:382209 original size:476 final size:476
Alignment explanation
Indices: 381317--384229 Score: 3767
Period size: 476 Copynumber: 6.1 Consensus size: 476
381307 TCCTAAAGAC
* * * *
381317 AAATGGGGATTAGTTTGACCATTCATGTTTGTCTTCTTTAAAAGACAAACTTTGATTCCATCAAA
1 AAATGGGGATTAGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAA
* * *
381382 AATGGTGGAAAGAATAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT-ATTAATGG
66 AATGGTGGAAAGAAAAGCTTTTCTAGCGACACCAAAGCATCAATGTCATGTATCCTAATGAA-GG
* * * *
381446 GAATGTGTTTTTA-GTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATAGATGCTTGTCT
130 AAATG-GGTTTTAGGTTCCAAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCT
* *
381510 TATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCGAAGCAAAA-A
194 TATTTAAGGGATGAACTTTGATTTTATGGAAAAT-AGGGCAAAGAAAAGATTTCCATGCAAAAGA
* * * *
381574 AAATCATCAATATCATTTATCCTGATGAGGAGAATATGCTTATAGTACCTGATCACAAAATGAAT
258 AAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAAT
* * * *
381639 GAAGATCATTACTAGAATCCATATTTGTCTCATTTGATGCATGAACTTAAACTTTACAAAAATTA
323 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTACAAAAATTA
*
381704 GTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAAAGAGAAGAAC-A
388 GTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAAAGAGAAG-ACTA
* *
381768 TTTTTGTGATGCCTAATCCTGAAAA
452 TATTTATGATGCCTAATCCTGAAAA
** * * * *
381793 AAATGGGGATTAGTTTGTGTATTCAAGTTTGTTTTATTTGAGAGACAAACTTTGATTCTATAAAA
1 AAATGGGGATTAGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAA
** ** *
381858 AATGGCAGAAAGAAAAGCTTTTCTAGCGACACCAAAGCATCAATGTCATACATCTTAATGAAGGA
66 AATGGTGGAAAGAAAAGCTTTTCTAGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGA
* * * **
381923 AATGGGTTTTAGGTTCCAAATCCT-AAAATCAATGGAGATTGTTGTGAGAATCGATGCTTGTCTT
131 AATGGGTTTTAGGTTCCAAATCTTGAAAA-GAATGGAGACTGTTACGAGAATCGATGCTTGTCTT
* * * *
381987 TTTTGAGGGATGAAATTTGATTTTATGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
195 ATTTAAGGGATGAACTTTGATTTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
* *
382052 ATCATCAGTATCATTTATCTTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGA
260 ATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGA
* * * * *
382117 TGATCATTACTAGAATCCATGTTTGTCTTACTTAAGGCATGAACTTAGACTTTGCAAAAATTGGT
325 AGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTACAAAAATTAGT
* * * * *
382182 GGGAAAAATGCCTTTCTCGTGAAACCAAAGCATCAATATTGCGTCTCCTAAAGAGAAGACTATAT
390 GGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAAAGAGAAGACTATAT
* *
382247 CTATGGTGCCTAATCCT-AAAA
455 TTATGATGCCTAATCCTGAAAA
* * * *
382268 AGAATGGGGATTAGTTTGACCATTCATGTTTGTCTTCTTTAAAAGACAAACTTTGATTCCATCAA
1 A-AATGGGGATTAGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAA
* * * * * * *
382333 AAACGG-GAGAAAGAATAGTTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTATTGATG
65 AAATGGTG-GAAAGAAAAGCTTTTCTAGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAG
* ** * * *
382397 GGAATTTGTTTT-TGTCCCTAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCT
129 GAAATGGGTTTTAGGTTCCAAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCT
* *
382461 TATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCAAGCAAAAAA
194 TATTTAAGGGATGAACTTTGATTTTATGGAAAAT-AGGGCAAAGAAAAGATTTCCATGCAAAAGA
* * *
382526 AAATCATCAATATCATTTATCCTGATGAGGAGAATGTGCTTATAGTGACTAATCACAAAATGAAG
258 AAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAAT
* * *
382591 GAAGATCATTTCTAGAATCCATGTTAGTCTCATTTAAGGCACGAACTTAGACTTTACAAAAATTA
323 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTACAAAAATTA
* * *
382656 GTGAGAAAAATGCCTTTCTTGTGAAACCAAAACATCAATATCGTGTATCCTAAAGAGAAGAAC-A
388 GTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAAAGAGAAG-ACTA
* *
382720 TTTTTGTGATGCCTAATCCTGAAAA
452 TATTTATGATGCCTAATCCTGAAAA
** * * *
382745 AAATGGGGATTAGTTTGTGTATTCAAGTTTGTTTTATTTAAGAGACAAACTTTGATTCTATAAAA
1 AAATGGGGATTAGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAA
* * ** * *
382810 AATGGCGGAAAGAAAAGCTTTTCTAGTGACACTGAAGCATCAATGTCATATATCTTAATGAAGGA
66 AATGGTGGAAAGAAAAGCTTTTCTAGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGA
* * * *
382875 AATGGGTTTTAGGTTCCAAATCCT-AAAATAAATGGAGACTGTTGCGAGAATCGAGGCTTGTCTT
131 AATGGGTTTTAGGTTCCAAATCTTGAAAA-GAATGGAGACTGTTACGAGAATCGATGCTTGTCTT
* * * * *
382939 TTTTGAGGGATGAAATTTGATTTTATGAAAAATAGGACAAAGAAAAGATTTCCATGCAAAAGAAA
195 ATTTAAGGGATGAACTTTGATTTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
*
383004 ATCATCAATATCATTTATCTTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGA
260 ATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGA
* * * *
383069 TGATCATTACTAGAATCAATGTTTGTCTTA-CTAGAGGCATGAACTTAGACTTTACAAAAATTAG
325 AGATCATTACTAGAATCCATGTTTGTCTCATTTA-AGGCATGAACTTAGACTTTACAAAAATTAG
* * ** * *
383133 TGGGGAAAATGCTTTTCTCACGAAACCAAAGCATCAATATCGCGTCTCCTAAAGAGAAGACTATA
389 TGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAAAGAGAAGACTATA
*
383198 TTTATGGTGCCTAATCCTGAAAA
454 TTTATGATGCCTAATCCTGAAAA
*
383221 AAATGGGGATTAGTTTGACCATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCT-TCAA
1 AAATGGGGATTAGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT-CTATCAA
* * *
383285 AAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGA
65 AAATGGTGGAAAGAAAAGCTTTTCTAGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAG-
* * * * * * * *
383350 GATTAT-GCTTTT-GGTACCAAATCTTGAAAAGAATGCAGATTGTTGCGAGAATCAATGTTTGTC
129 GA-AATGGGTTTTAGGTTCCAAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTC
* * * *
383413 TTATTTAAGAGATGAACTTTGATTTTATGGAAAATAGGGTAAAGAAAAGATTTCGATACAAAAGA
193 TTATTTAAGGGATGAACTTTGATTTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
* *
383478 AAGTCATCAATATCATTTATCCTAATGAGAAGAATGTGCTTATAGTGCCTAATCACAAAATGAAT
258 AAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAAT
* * * ** * * *
383543 GAAGATCATTACTGGAATCCATGTTTGTCTCATTTGATGCACAAACTTAAACTTTACAAGAATTG
323 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTACAAAAATTA
* * * **
383608 GTGGGAGAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAAAAAGAAGAAAAT
388 GTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAAAGAGAAGACTAT
* * *
383673 TTTTATGGTGCCTAATCCGGAAAA
453 ATTTATGATGCCTAATCCTGAAAA
* * ** * * * *
383697 GAATGGGGATTAGTATGTGTATTCAAGTTTATTTTATTTGAGAGACAAACTTTGATTCTATCAAA
1 AAATGGGGATTAGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAA
* * * * *
383762 AATGGTGGAAAGAAAAGCTTTTCTAGCGACACTAGAGCATCAATGTCATGTATCCTATTAAAGGG
66 AATGGTGGAAAGAAAAGCTTTTCTAGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGA
* * * * * * * *
383827 AATGTGTTTTTGGTTCCCAATCATGAAAAGAGTGGACACTATTACGAGAATCAATGCTTGTCTTA
131 AATGGGTTTTAGGTTCCAAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTA
* * * * * * *
383892 TTTAAGGGAGGAACTTTTAGTTTATGCAAAGTAGGGCAAAGAAAAGATTTCCTTGTAAAAGAAAA
196 TTTAAGGGATGAACTTTGATTTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
**
383957 TCATCAATATCATTTATCCTAGA-GAGGAGAATGTGCTTATAGCACCTAATCACAAAATGAATGA
261 TCATCAATATCATTTATCCTA-ATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGA
* * * * * * *
384021 TGACCATTACTAGAATCAATGTTTGTC-CTTTTGCA-GCATGAACTTAGACTTTACAAATATTGG
325 AGATCATTACTAGAATCCATGTTTGTCTCATTT-AAGGCATGAACTTAGACTTTACAAAAATTAG
* * *
384084 TGGGAAAAATGCCATTCTTGCGAAACCAAAACATCAATATCGCATATCCTAAAGAAAAGACTATA
389 TGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAAAGAGAAGACTATA
*
384149 TTTATGATGCCTAATCCAGAAAA
454 TTTATGATGCCTAATCCTGAAAA
* * *
384172 GAATGGGGATTGGTTTGACTATTCATGTTTCTCTTATTTAAGAG--AAACTTTGATTCTA
1 AAATGGGGATTAGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
384230 ATGAGAACCA
Statistics
Matches: 2096, Mismatches: 315, Indels: 55
0.85 0.13 0.02
Matches are distributed among these distances:
473 14 0.01
474 2 0.00
475 263 0.13
476 1718 0.82
477 97 0.05
478 2 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (476 bp):
AAATGGGGATTAGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAA
AATGGTGGAAAGAAAAGCTTTTCTAGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGA
AATGGGTTTTAGGTTCCAAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTA
TTTAAGGGATGAACTTTGATTTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
TCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAA
GATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTACAAAAATTAGTG
GGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAAAGAGAAGACTATATT
TATGATGCCTAATCCTGAAAA
Found at i:400840 original size:12 final size:12
Alignment explanation
Indices: 400810--400885 Score: 57
Period size: 12 Copynumber: 5.9 Consensus size: 12
400800 AAGAGAAAGA
*
400810 AGAGATAAGAGG
1 AGAGATAGGAGG
400822 -GATGATAGGAGG
1 AGA-GATAGGAGG
400834 AGAGATAGAGAGATTG
1 AGAGATAG-GAG---G
*
400850 TAAAGATAGGAGG
1 -AGAGATAGGAGG
400863 -GATGATAGGAGG
1 AGA-GATAGGAGG
400875 AGAGATAGGAG
1 AGAGATAGGAG
400886 AGATAATAGA
Statistics
Matches: 52, Mismatches: 3, Indels: 18
0.71 0.04 0.25
Matches are distributed among these distances:
11 3 0.06
12 30 0.58
13 8 0.15
16 4 0.08
17 7 0.13
ACGTcount: A:0.42, C:0.00, G:0.43, T:0.14
Consensus pattern (12 bp):
AGAGATAGGAGG
Found at i:400857 original size:41 final size:42
Alignment explanation
Indices: 400812--400918 Score: 153
Period size: 42 Copynumber: 2.6 Consensus size: 42
400802 GAGAAAGAAG
* **
400812 AGATAAGAGGGATGATAGGAGGAGAGATA-GAGAGATTGTAA
1 AGATAGGAGGGATGATAGGAGGAGAGATAGGAGAGATAATAA
*
400853 AGATAGGAGGGATGATAGGAGGAGAGATAGGAGAGATAATAG
1 AGATAGGAGGGATGATAGGAGGAGAGATAGGAGAGATAATAA
* *
400895 AGAGAGGGGGGATGATAGGAGGAG
1 AGATAGGAGGGATGATAGGAGGAG
400919 GAGAGAAAAA
Statistics
Matches: 59, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
41 28 0.47
42 31 0.53
ACGTcount: A:0.41, C:0.00, G:0.45, T:0.14
Consensus pattern (42 bp):
AGATAGGAGGGATGATAGGAGGAGAGATAGGAGAGATAATAA
Found at i:400894 original size:12 final size:12
Alignment explanation
Indices: 400854--400899 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
400844 AGATTGTAAA
*
400854 GATAGGAGGGAT
1 GATAGGAGAGAT
400866 GATAGGAGGAGA-
1 GATAGGA-GAGAT
400878 GATAGGAGAGAT
1 GATAGGAGAGAT
*
400890 AATA-GAGAGA
1 GATAGGAGAGA
400900 GGGGGGATGA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
11 10 0.33
12 17 0.57
13 3 0.10
ACGTcount: A:0.43, C:0.00, G:0.43, T:0.13
Consensus pattern (12 bp):
GATAGGAGAGAT
Found at i:406829 original size:159 final size:156
Alignment explanation
Indices: 406163--417270 Score: 1779
Period size: 159 Copynumber: 70.3 Consensus size: 156
406153 AAATTGGTGG
** *
406163 GAAAATGCCTTTCTTGTGAAACCAGAACATCAATATTGTGTATCCTAATGAAAAGAACATGTTTA
1 GAAAA-GCCTTTCTTGTGAAACCA-AACATCAATATCATGTATCCTAAT-AGAAGAACATGTTTA
* * * * *
406228 TGGTGCCTAATCCTTAAAAGAATGGGGATTAGTATGTGTATTCTTGTTTGTCTTATTTAAGAGAC
63 TGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATGAG-AATCATGTTTGTCTTATTTAAGAGAC
* * *
406293 AAACATTGATTCTATGAAAAACGGTAGAAA
127 AAACTTTGATTCTATCAAAAACGGTGGAAA
* * * *
406323 GAAAAG-CTTTCCTTGCGACACCAAACCATCAATGTCATGTATCCT-ATTGAAGAGA-ATGTGTT
1 GAAAAGCCTTT-CTTGTGAAACCAAA-CATCAATATCATGTATCCTAATAGAAGA-ACA--TGTT
* * * * * * *
406385 TTTGGTACCAAATCTTTG-AAAGAATGGAGATT-GTTACGAGAATCGATGCTTGTCTTATTTAGG
61 TATGGTGCCTAATC-CTGAAAAGAATGGAGATTAG-TATGAGAATC-ATGTTTGTCTTATTTAAG
* *** * * * * *
406448 GGTTGAACTTTTATTTTATGGAAAATA-AG-GCAAA
123 AGACAAACTTTGATTCTAT-CAAAA-ACGGTGGAAA
* ** * * ** * * * ** * *
406482 GAAAGGATTTTCATGTAAAAGAAAATCATCAATATCATTTATCCTAGT-GAGGAATGTGCTTATA
1 GAAAAGCCTTTCTTGTGAAACCAAA-CATCAATATCATGTATCCTAATAGAAGAACATGTTTATG
* * * ** *
406546 GTGCCTAAT--TAGAAAATGAATGAAGATCATTACT-AGAATCCATGTTTGTCCCATTT--GAGG
65 GTGCCTAATCCT-GAAAA-GAATGGAGATTAGTA-TGAGAAT-CATGTTTGTCTTATTTAAGAGA
* * *
406606 CATGAACTTAGACTT-TA-CAAAAATTGGTGGGAA
126 CA--AACTTTGA-TTCTATCAAAAA-CGGTGGAAA
* ** *
406639 -AAATGCCTTTCTTGCAAAACCAAAACATCAATATCATGTATCCTAAATAGAACAACATGTTTAT
1 GAAAAGCCTTTCTTGTGAAACC-AAACATCAATATCATGTATCCT-AATAGAAGAACATGTTTAT
* *
406703 GGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTACTCATGTTTGTCTTATTTAAGAGACA
64 GGTGCCTAATCCTGAAAAGAATGGAGATTAGTATGAG-AATCATGTTTGTCTTATTTAAGAGACA
*
406768 AACTTTGATTCAATCAAAAACGGTGGAAA
128 AACTTTGATTCTATCAAAAACGGTGGAAA
* * * * *
406797 GAAAAGCCTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCT-ATTGATGCGA-ATGCGTTT
1 GAAAAGCCTTTCTTGTGAAACCAAA-CATCAATATCATGTATCCTAATAGAAG-AACAT--GTTT
* *** * * * *
406860 TTGGTATGTAATCCTGAAACA-AATGTAGA-TCGTTATGAGAATCGATGCTTGTCTTATTTAAGG
62 ATGGTGCCTAATCCTGAAA-AGAATGGAGATTAG-TATGAGAATC-ATGTTTGTCTTATTTAAGA
** * * * *
406923 GATGAACTTTGATTTTATGGAAAATAAGG-GCAAA
124 GACAAACTTTGATTCTAT-CAAAA-ACGGTGGAAA
* ** * ** * * *
406957 GAAAAG-ATTTCCAAG-CAAAAGAAATCACCAATATCA-GTTATCCTAAT-GAGGAAAATGTGCT
1 GAAAAGCCTTT-CTTGTGAAACCAAA-CATCAATATCATG-TATCCTAATAGAAGAACATGT--T
* * * * * * * * *
407018 TATAGTGCCTAATCAC--AAAATGAATGAAGATCATTTTTAGAATCCATGTTAGTCTCATTTGAG
61 TATGGTGCCTAATC-CTGAAAA-GAATGGAGATTAGTATGAGAAT-CATGTTTGTCTTATTTAAG
** ** *
407081 -GCACAAACTTAAAATT-TA-CAAAAATTAGTGGGAA
123 AG-ACAAACTT-TGATTCTATCAAAAA-CGGTGGAAA
* * *** *
407115 -AAATGCCTTTCTTGAGAAACCAAAACATCAATATCGCATATCCTAACGAGAAG-ACTATGTTTA
1 GAAAAGCCTTTCTTGTGAAACC-AAACATCAATATCATGTATCCTAA-TAGAAGAAC-ATGTTTA
* * * * * * * * *
407178 TGGTGCCTAATCTTGAAAAAAATGGGGAATAGAATGAGTATGCAAGCTTGCCTTATTTAAGAGAC
63 TGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATGAGAAT-CATGTTTGTCTTATTTAAGAGAC
* * * *
407243 AAACTTTAACTATGTCAAAAACGGTGGAAA
127 AAACTTTGATTCTATCAAAAACGGTGGAAA
* * * * * * * *
407273 GAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT-ATTGATGGGA-ATGTGTTT
1 GAAAAGCCTTTCTTGTGAAACCAAA-CATCAATATCATGTATCCTAATAGA-AGAACATGT-TTA
* * * * * *
407336 TGGCATG-C-AACCCTGAAACGAATGTAGATT-GTTACGAGAATCGATGCTTGTCTTATTTAAGG
63 TGG--TGCCTAATCCTGAAAAGAATGGAGATTAG-TATGAGAATC-ATGTTTGTCTTATTTAAGA
*** * * * * *
407398 GGTGAACTTCGATTTTATGGAAAATA-AG-GCAAA
124 GACAAACTTTGATTCTAT-CAAAA-ACGGTGGAAA
* * * ** * * * ** *
407431 GAAACG-ATTTCCTT-TCAAAAGAAAATCATCAATATCATTTCTCCTAAT-GAGGAATGTGCTTA
1 GAAAAGCCTTT-CTTGT-GAAACCAAA-CATCAATATCATGTATCCTAATAGAAGAACATGTTTA
** * * * *
407493 TAATGCCTAATCAC--AAAATGAATGAAGATCATTATTAGAATCCATGTTTGTCTTATTT--GAG
63 TGGTGCCTAATC-CTGAAAA-GAATGGAGATTAGTATGAGAAT-CATGTTTGTCTTATTTAAGAG
* * * *
407554 GCATGAACTTAGACTT-TA-CAAAAATTGGTGGGAA
125 ACA--AACTTTGA-TTCTATCAAAAA-CGGTGGAAA
* * * ** * *
407588 -AAATGCCTTT-TTCGTGAAACCTAAACATGAATAGCGCGTTTCCTAA-AG-AGAAGATTGTATT
1 GAAAAGCCTTTCTT-GTGAAACC-AAACATCAATATCATGTATCCTAATAGAAGAACA-TG--TT
* * * * *
407649 TATCGTGCCTAATCCTGAAAAGACT--AG--TACG--TG-TATTCATGTTTGTC-T-TTAAAGAG
61 TATGGTGCCTAATCCTGAAAAGAATGGAGATTA-GTATGAGAATCATGTTTGTCTTATTTAAGAG
* * * *
407705 AGAAACTTTGATTCTATCAAAAACAGAGAAAA
125 ACAAACTTTGATTCTATCAAAAACGGTGGAAA
* * * * ** * * * *
407737 GAAAAGCTTTTCTTGCGATACCAAAGCATCAATGTTGTGTTTCCTACT-GAAGGGACATTGTTTT
1 GAAAAGCCTTTCTTGTGAAACCAAA-CATCAATATCATGTATCCTAATAGAA-GAACA-TGTTTA
* * * * *
407801 TAGCT-CCCAATCTTGAAAAGAATGGAGATT-GTTATGAGAATCAATGCTTGTCTTATTTAAGGG
63 T-GGTGCCTAATCCTGAAAAGAATGGAGATTAG-TATGAGAATC-ATGTTTGTCTTATTTAAGAG
** * * * *
407864 ATGAACTTTGATTTTTTGGAAAATA-GG-GCAAA
125 ACAAACTTTGATTCTAT-CAAAA-ACGGTGGAAA
** ** *** ** * * * * * ** ** *
407896 GAAAAGATTTTGATACAAAAGAAAATCACCAAAATCTTTTATCTTAATGAGGGGAATGTGCTTAT
1 GAAAAGCCTTTCTTGTGAAACCAAA-CATCAATATCATGTATCCTAAT-AGAAGAACATGTTTAT
* * * * * *
407961 AGTGCCTAATCAC--AAAATGAATGAAGATCATTCCT-AGGATCCATGTTTGTCTTATTT--GAT
64 GGTGCCTAATC-CTGAAAA-GAATGGAGATTAGT-ATGAGAAT-CATGTTTGTCTTATTTAAGA-
* ** **
408021 GCACGAACTTAAAATT-TA-CAAAAATTAGTAGG-AA
124 G-ACAAACTT-TGATTCTATCAAAAA-CGGT-GGAAA
* * * *
408055 -AAATGCCTTTCTTGCGAAACCAAAACATCAATATAATGTATCCTAATGAGAAGCACATGTTTAT
1 GAAAAGCCTTTCTTGTGAAACC-AAACATCAATATCATGTATCCTAAT-AGAAGAACATGTTTAT
* * * * * *
408119 GGTGCCTAATCCTGAAAAGAA-CGAGGACTAGTATGTGTATTCATGTTTGTC-T-TTAAAGAGAG
64 GGTGCCTAATCCTGAAAAGAATGGA-GATTAGTATGAG-AATCATGTTTGTCTTATTTAAGAGAC
*
408181 AAACTTTGATTCTATCAAAAACGGTGAAAA
127 AAACTTTGATTCTATCAAAAACGGTGGAAA
* * * * * * ** *
408211 GAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCTTGTATCCTATTGAAAAGAATGTGTTTTT
1 GAAAAGCCTTTCTTGTGAAACCAAA-CATCAATATCATGTATCCTAAT-AGAAGAACATGTTTAT
* * * * * * * * * *
408276 GGTACCCAATCTTGGAAAGAATGGAGACT-GTTATGAGCATCGTTGCTTGTCTTATTTAAGGGAT
64 GGTGCCTAATCCTGAAAAGAATGGAGATTAG-TATGAGAATC-ATGTTTGTCTTATTTAAGAGAC
* * * *
408340 GAACTTTTATTTTATACAAAATA-GG-GCAAA
127 AAACTTTGATTCTAT-CAAAA-ACGGTGGAAA
* ** * * * ** *
408370 GAAAAG-ATTTC--GATGCAAAAAAAATCATCAATATCATTTATCCTAGTGAGGAGAATGTGCTT
1 GAAAAGCCTTTCTTG-TG-AAACCAAA-CATCAATATCATGTATCCTAAT-AGAAGAACATGTTT
* **** * ** * ** *
408432 ATAGTGCCTAATAAAAAAAATGAATGGCGACCATTACAAGAATCCATCTTTGTCTCT-TTT--GA
62 ATGGTGCCTAATCCTGAAAA-GAATGGAGATTAGTATGAGAAT-CATGTTTGTCT-TATTTAAGA
* * *
408494 GGCATGAACTTAGACTT-TA-CAAAAATTGGT-GAGAA
124 GACA--AACTTTGA-TTCTATCAAAAA-CGGTGGA-AA
* * * *** * *
408529 -AAATGCCATTCTTGCGAAACCAAAACATCAATATCGCATATCCTAAAGAGAAG-ACTATATTTA
1 GAAAAGCCTTTCTTGTGAAACC-AAACATCAATATCATGTATCCT-AATAGAAGAAC-ATGTTTA
* * * * *
408592 TGGTGCCTAATCCAGAAAAGAATGGGGATTAGTTTGACTATTCATGTTTGTCTTATTTAAGAGAC
63 TGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATGA-GAATCATGTTTGTCTTATTTAAGAGAC
*
408657 AAACTTTGATTCCATCAAAAACGGTGGAAA
127 AAACTTTGATTCTATCAAAAACGGTGGAAA
* * * * * * ** *
408687 GAATAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTACT-GATGGGAATTTGTTTT
1 GAAAAGCCTTTCTTGTGAAACCAAA-CATCAATATCATGTATCCTAATAGA--AGAACATGTTTA
* * ** * * * * *
408751 TGGTTCCGAATATTGAAAAGAACGGAGACT-GTTACGAGAATCGATGCTTGTCTTATTTAAGGGA
63 TGGTGCCTAATCCTGAAAAGAATGGAGATTAG-TATGAGAATC-ATGTTTGTCTTATTTAAGAGA
** * * *
408815 TGAACTTTGATT-TATAGAAAATAAGG-GCAAA
126 CAAACTTTGATTCTAT-CAAAA-ACGGTGGAAA
** ** * * * * * *
408846 GAAAAGATTTTCAAG-CAAA-AAAATTCATCAATATCATATATCCTAAT-GAGGAAAATGGGCTT
1 GAAAAGCCTTTCTTGTGAAACCAAA--CATCAATATCATGTATCCTAATAGAAGAACAT--GTTT
* * * * * * * *
408908 ATAGTGCCTAATCAC-AAAAAGAGTGAAGATCATTACT-AGAATCCATGTTTGTCTCATTTGACG
62 ATGGTGCCTAATC-CTGAAAAGAATGGAGATTAGTA-TGAGAAT-CATGTTTGTCTTATTT-AAG
* ** * * *
408971 TG-CAAACTTAAACTT-T-GCAAAAATTGGTGGGAA
123 AGACAAACTTTGA-TTCTATCAAAAA-CGGTGGAAA
* * * *
409004 -AAATGCGTTTCTTGAT-AAACCAAAACATCAATATCGTGTATCCTAATGAAAAGAACATGTTTA
1 GAAAAGCCTTTCTTG-TGAAACC-AAACATCAATATCATGTATCCTAAT-AGAAGAACATGTTTA
* * *
409067 TGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGCCTTATTTAACG-GA
63 TGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATGAG-AATCATGTTTGTCTTATTTAA-GAGA
*
409131 CAAACTTTGATTCTATCAAAAATGGTGGAAA
126 CAAACTTTGATTCTATCAAAAACGGTGGAAA
* * * * ** * ** *
409162 G-AAAGCCTTTCTTG-CAACCCCACAGCTTCAACGTCATGTATCCTAATGGCGGAA-ATGTGTTT
1 GAAAAGCCTTTCTTGTGAA-ACCA-AACATCAATATCATGTATCCTAATAGAAGAACATGT-TTA
* * * * * * ** * *
409224 TAGGTTCCCAATCTTAAAAACAATGGAGACT-GTTACAAGAAACGATGCTTGTCTTATTTAAGAG
63 T-GGTGCCTAATCCTGAAAAGAATGGAGATTAG-TATGAGAATC-ATGTTTGTCTTATTTAAGAG
* * * * *
409288 ATAAAATTTGATTTTAT-AGAAAATAGG-GCAAA
125 ACAAACTTTGATTCTATCA-AAAA-CGGTGGAAA
* * ** ** * * ** *
409320 G-AAAG-ATTTCCATGCAAAAAAAAACATCAATATCATTTATCCTAATGAGGAGAATGTGGTTAT
1 GAAAAGCCTTT-CTTGTGAAACCAAACATCAATATCATGTATCCTAAT-AGAAGAACATGTTTAT
* * * * * * *
409383 AGTGCCGAAT--T-ACAA-AATGAAAGATCATTACT-AGAATCCATGTTTGT-TTCATTTGAG-G
64 GGTGCCTAATCCTGAAAAGAATG-GAGATTAGTA-TGAGAAT-CATGTTTGTCTT-ATTTAAGAG
* * * *
409441 A-ATGAAGTTAGACTTC-A-CAAAAA--TTGG-CA
125 ACA--AACTTTGA-TTCTATCAAAAACGGTGGAAA
* ** * * *
409470 GCTATAATGCCTTTCTTGCAAAACCAAAACATCAATATCACGTATCCTAAT-GAAAAGACTATAT
1 G--A-AAAGCCTTTCTTGTGAAACC-AAACATCAATATCATGTATCCTAATAGAAGA-AC-ATGT
* * * * *
409534 TTATGATGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTATTCATGTTTGTCTTATTTAAGA
60 TTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATGA-GAATCATGTTTGTCTTATTTAAGA
* * *
409599 GACAAGCTTTGATTCCATAAAAAACGGTGGAAA
124 GACAAACTTTGATTCTATCAAAAACGGTGGAAA
* * * * * * * ** *
409632 GAAAAGCTTTTCTTGCGACACCAAAGCATTAATGTCATGTATCCT-ATTGATTGGAATGTGTTTT
1 GAAAAGCCTTTCTTGTGAAACCAAA-CATCAATATCATGTATCCTAATAGA--AGAACATGTTTA
* * * * * *
409696 TGGT-TCTCAATCTTGAAAAGAATGGAGACT-GTTATGAGAATCGATGCTTGTCTTATATAAGGG
63 TGGTGCCT-AATCCTGAAAAGAATGGAGATTAG-TATGAGAATC-ATGTTTGTCTTATTTAAGAG
** * * * * *
409759 ATGAACTTTGATTTTATGGAAAATA-TGAGCAAA
125 ACAAACTTTGATTCTAT-CAAAA-ACGGTGGAAA
** ** * ** * * *
409792 GAAAA-TATTTCCAAG-CAAAAAAAATCATCAATATCATTTATCATAATA-ACGAGA-ATGTGCT
1 GAAAAGCCTTT-CTTGTGAAACCAAA-CATCAATATCATGTATCCTAATAGAAGA-ACATGT--T
* * * * * * * * *
409853 TATAGTGCCTAATCAC--AAAATGAATGAAGATCATTTTTAGAATCCATGTTAGTCTCATTTGAG
61 TATGGTGCCTAATC-CTGAAAA-GAATGGAGATTAGTATGAGAAT-CATGTTTGTCTTATTTAAG
** **
409916 -GCACAAACTTAAAATT-TA-CAAAAATTAGTGGAAA
123 AG-ACAAACTT-TGATTCTATCAAAAA-CGGTGGAAA
* * * ** *
409950 -AAATGCCTTTCTTGCGAAACCAAAATATCAATATCGCGTATCCTTATGAGAAG-ACTATGTTTA
1 GAAAAGCCTTTCTTGTGAAACC-AAACATCAATATCATGTATCCTAAT-AGAAGAAC-ATGTTTA
* * * *
410013 TGGTGCCTAATCCTAAAAAGAAGGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAC
63 TGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATGAG-AATCATGTTTGTCTTATTTAAGAGAC
410078 AAACTTTGATTCTATCAAAAACGGTGGAAA
127 AAACTTTGATTCTATCAAAAACGGTGGAAA
* * * * * * * * * *
410108 GAAAAGCTTTTGTTGCGACACCAAAGCATCAATGTCTTGTATCCT-ATTGAAGGGATAGTGTTTT
1 GAAAAGCCTTTCTTGTGAAACCAAA-CATCAATATCATGTATCCTAATAGAA-GAACA-TGTTTA
* * * * *
410172 TGGCT-CCCAATCTTGAAAAGAATGGAGATT-GTTACGAGAATCGATGCTTGTCTTATTTAAGGG
63 TGG-TGCCTAATCCTGAAAAGAATGGAGATTAG-TATGAGAATC-ATGTTTGTCTTATTTAAGAG
** * * * *
410235 ATGAACTTTGATTTTATGGAAAATA-AG-GCAAA
125 ACAAACTTTGATTCTAT-CAAAA-ACGGTGGAAA
* ** ** * * * ** *
410267 GAAAAG-ATTTCCATT-CAAAAGAAAATCATCAATATCATTTCTCCTAATA-AGGAATGTGCTTA
1 GAAAAGCCTTT-C-TTGTGAAACCAAA-CATCAATATCATGTATCCTAATAGAAGAACATGTTTA
* * * * * * *
410329 TAGTGCCTAATCAC--AAAATGAATGAAGATCATTACT-AGAATCTATGTTTGTATCATTTGAG-
63 TGGTGCCTAATC-CTGAAAA-GAATGGAGATTAGTA-TGAGAATC-ATGTTTGTCTTATTTAAGA
* **
410390 GCACAAACTTAGACTT-TA-CAATAATTGGTAGG---
124 G-ACAAACTTTGA-TTCTATCAA-AAACGGT-GGAAA
* * *
410422 GAAAATGCATTTCTTGTGAAATCAAAGCATCAATATCGTGTATCCTAATGAGAAG-ACTATGTTT
1 GAAAA-GCCTTTCTTGTGAAACCAAA-CATCAATATCATGTATCCTAAT-AGAAGAAC-ATGTTT
* * *
410486 ATGGCGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTACTCATGTTTGTCTTATTTAAGAGA
62 ATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATGAG-AATCATGTTTGTCTTATTTAAGAGA
* *
410551 AAAACTTTGATTCTATCAAAAATGGTGGAAA
126 CAAACTTTGATTCTATCAAAAACGGTGGAAA
* * * * * *
410582 GAAAAGCCTTTCTTGCGACACCTAAGCATCAATGTCATGCATCCTAAT-GAAGGAA-ATGTGTTT
1 GAAAAGCCTTTCTTGTGAAACC-AAACATCAATATCATGTATCCTAATAGAA-GAACATGT-TTA
* ** * * * * * *
410645 TAGGCT-CCCAATCCT-ATAAACTATGGAGAGTATTACGAGAATCAATGCTTGTCTTATTCAAGG
63 T-GG-TGCCTAATCCTGA-AAAGAATGGAGATTAGTATGAGAATC-ATGTTTGTCTTATTTAAGA
**** * * * * *
410708 GATGGGCTTTGATTTTGTGAAAAATAGG-GCAAA
124 GACAAACTTTGATTCTATCAAAAA-CGGTGGAAA
* * ** ** * * * ** *
410741 GAAAAG-ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCTTAATGAGGAGAATGTGCTTA
1 GAAAAGCCTTT-CTTGTGAAACCAAA-CATCAATATCATGTATCCTAAT-AGAAGAACATGTTTA
* * * * * *
410805 TCGTGCCTAGTCAC--AAAATGAATGAAGATCA-TGACT-AGAATCCACGTTTGTCTTA-TT-CG
63 TGGTGCCTAATC-CTGAAAA-GAATGGAGATTAGT-A-TGAGAAT-CATGTTTGTCTTATTTAAG
* * ** *
410864 AGGCATGAACTTAGACTT-TA-CAAAAATTAGTGGGAA
123 AGACA--AACTTTGA-TTCTATCAAAAA-CGGTGGAAA
* * ** * *** *
410900 -AAATGCTTTTCTT-ACAAATCCAAAATATCAATATCGCATATCCTAATGAGAAG-ACTAAGTTT
1 GAAAAGCCTTTCTTGTGAAA-CC-AAACATCAATATCATGTATCCTAAT-AGAAGAAC-ATGTTT
* * * * * * *
410962 ATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTTTGACTATTCATATTTGTCTTATCTAAGAGA
62 ATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATGA-GAATCATGTTTGTCTTATTTAAGAGA
* *
411027 CAAACTTTGATTCCATCAAAAACGATGGAAA
126 CAAACTTTGATTCTATCAAAAACGGTGGAAA
* * * * * * * ** * *
411058 GAAAAGCTTTTCTTG-CAACACCAAAGCATCAATGTCAAGCATCCTATTGAGTAGAATGTTTTTT
1 GAAAAGCCTTTCTTGTGAA-ACCAAA-CATCAATATCATGTATCCTAAT-AGAAGAACATGTTTA
* ** * * * *
411122 TGGTACCTAATATTGGAAAGAATGGAGATT-GTTACGAGAATCGATGCTTGTCTTATTTAAGGGA
63 TGGTGCCTAATCCTGAAAAGAATGGAGATTAG-TATGAGAATC-ATGTTTGTCTTATTTAAGAGA
** * * * * *
411186 TGAACTTTTATTTTATGGAAAATA-AG-GCAAA
126 CAAACTTTGATTCTAT-CAAAA-ACGGTGGAAA
* * * ** * * * *
411217 GAAAAG-ATTTCCATG-CAAATGAAAATCATTAATACCAT-TCATCCTAGT-GACGAGA-ATGTG
1 GAAAAGCCTTT-CTTGTGAAA-CCAAA-CATCAATATCATGT-ATCCTAATAGAAGA-ACATGT-
* * * * * *
411277 CTTATAGTACCTAATCAC--AAAATG-ATTGACGATCATTACT-AGAATCCATGTTTGTCTCATT
60 -TTATGGTGCCTAATC-CTGAAAA-GAATGGA-GATTAGTA-TGAGAAT-CATGTTTGTCTTATT
* * *
411338 T--GAGGCATGAACTTAGACTT-TA-CAAAAAGTGGTTGGAAA
119 TAAGAGACA--AACTTTGA-TTCTATCAAAAA-CGG-TGGAAA
* * * * ** ** * *
411377 -AATA-CCTCTCTCGCGAAACCAAAACATCTGTATCGCGTATCCTAA-AGAAAAGACTATATTTA
1 GAAAAGCCTTTCTTGTGAAACC-AAACATCAATATCATGTATCCTAATAGAAGA-AC-ATGTTTA
* * * * * *
411439 TGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATG-GCTATTCGTGTTTGTCTTATTTAATAGG
63 TGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATGAG--AATCATGTTTGTCTTATTTAAGAGA
* **
411503 CAAACTTTGA-TCCATCAAAAATAGTGGAAA
126 CAAACTTTGATTCTATCAAAAACGGTGGAAA
* * * ** * * * * ** *
411533 GAAATGCTTTTCTTGCGACTCCAAAGCATCAATGTCATGCATCCTATTAAAAGGGAATGTGTTTT
1 GAAAAGCCTTTCTTGTGAAACCAAA-CATCAATATCATGTATCCTAATAGAA--GAACATGTTTA
* * * * * * * * * *
411598 TGGTACCCAATCTTGAAAAGATTGTAGATT-GTTACGAGAATTGATGCTTATCTTATTTAAGGGA
63 TGGTGCCTAATCCTGAAAAGAATGGAGATTAG-TATGAGAA-TCATGTTTGTCTTATTTAAGAGA
** * ** * * *
411662 TGAGCTAGGATTTTATGGAAAATA-AG-GGAAA
126 CAAACTTTGATTCTAT-CAAAA-ACGGTGGAAA
* * ** * * ** *
411693 GAAAAG-ATTTCCATG-GAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTT
1 GAAAAGCCTTT-CTTGTG-AAACCAAA-CATCAATATCATGTATCCTAAT-AGAAGAACATGTTT
* * * * * * * * * *
411756 ATAGTACCT-AGCCAGAAAATGAATGAAGATCATTACT-AGAATCCGTATTTGTCTCATTT--GA
62 ATGGTGCCTAATCCTGAAAA-GAATGGAGATTAGTA-TGAGAAT-CATGTTTGTCTTATTTAAGA
* * ** * *
411817 GGCATGCACTTAAACTT-TA-CAAAAATTGGTGGGAA
124 GACA--AACTTTGA-TTCTATCAAAAA-CGGTGGAAA
* * * *
411852 -AAAGGCCTTTCTTGCGAAACCAAAGGATCAATATCATGTATCCTAAATAGAACAACATGTTTAT
1 GAAAAGCCTTTCTTGTGAAACCAAA-CATCAATATCATGTATCCT-AATAGAAGAACATGTTTAT
* * *
411916 GGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTACTCATGTTTGTCTTATTTAAGAGACA
64 GGTGCCTAATCCTGAAAAGAATGGAGATTAGTATGAG-AATCATGTTTGTCTTATTTAAGAGACA
*
411981 AACTTTGATTCTATCAAAAACAGTGGAAA
128 AACTTTGATTCTATCAAAAACGGTGGAAA
* * * * * * *
412010 GAAAAGCCTTTCTTGCGACACCAAAGCTTCAATGTCATATATGCTAAT-GAAGGAA-ATGTGTTT
1 GAAAAGCCTTTCTTGTGAAACCAAA-CATCAATATCATGTATCCTAATAGAA-GAACATGT-TTA
* * * * * * ** * * *
412073 TAGGTTCCCAATCCTAAAAACAATTGAGACTA-TGACAAGAATCGATGCTTATCTTATTTAAGGG
63 T-GGTGCCTAATCCTGAAAAGAATGGAGATTAGT-ATGAGAATC-ATGTTTGTCTTATTTAAGAG
** * * * *
412137 TTGAAA-TTAGATTTTATGGAAAATA-GG-GCACAA
125 -ACAAACTTTGATTCTAT-CAAAA-ACGGTGGA-AA
* * ** ** * * * * *
412170 -AAAAG-ATTTCCATGCAAAAGAAAATCATTAATATCATTTATCCTAATGAGGAGAATATGCTTA
1 GAAAAGCCTTT-CTTGTGAAACCAAA-CATCAATATCATGTATCCTAAT-AGAAGAACATGTTTA
** * * *
412233 TAATGCCTAATCAC--AAAATGAATGAAGATCATTACT-AGAATCCATGTTTGT-TTCATTT--G
63 TGGTGCCTAATC-CTGAAAA-GAATGGAGATTAGTA-TGAGAAT-CATGTTTGTCTT-ATTTAAG
* * * * * * **
412292 AGGCGTGAAGTTAGACTT-TA-CAAAAATTGGCGGGTA
123 AGAC--AAACTTTGA-TTCTATCAAAAA-CGGTGGAAA
* * * * *
412328 -AAATGCCTTTCTTGCGAAACCAAAACATCAATATCATGCATCCTTATGAGAAG-ACAATATTTA
1 GAAAAGCCTTTCTTGTGAAACC-AAACATCAATATCATGTATCCTAAT-AGAAGAAC-ATGTTTA
* * * * * *
412391 TGGTGCCTAATCCTAAAAAGAATGGGGATTAGTTTGACTATTCATGTTTGCCTTATTTAAGAGAC
63 TGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATGA-GAATCATGTTTGTCTTATTTAAGAGAC
* * * **
412456 AAACTTTGATTCCAACAAAAACGATCAAAA
127 AAACTTTGATTCTATCAAAAACGGTGGAAA
* * * * * * ** *
412486 TAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCT-ATTGATGGGAATGTGTTTT
1 GAAAAGCCTTTCTTGTGAAACCAAA-CATCAATATCATGTATCCTAATAGA--AGAACATGTTTA
* * * * * * * * * * *
412550 TGGTTCCCAATCTTGAAAAGAATGGAGACTGGAATGAGAATCAATGCTTGTCTTTTTTAGGGGAT
63 TGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATGAGAATC-ATGTTTGTCTTATTTAAGAGAC
* * * *
412615 GAACTTTGATTTTATGGAAAGTAA-GG-GCAAA
127 AAACTTTGATTCTAT-CAAA--AACGGTGGAAA
* ** ** ** * * ** *
412646 GAAAAG-ATTTCCACGCAAAAAGAAAATCGTCAATATCAT-TAATCCTAATGAGGAGAATGTGCT
1 GAAAAGCCTTT-CTTG-TGAAACCAAA-CATCAATATCATGT-ATCCTAAT-AGAAGAACATGTT
* ** * * * *
412709 TATAGTGCCTAAT-C--ACAAAGTAAATAAAGATCATTACT-AGAATCTATGTTAGTCTCATTT-
61 TATGGTGCCTAATCCTGA-AAAG--AATGGAGATTAGTA-TGAGAATC-ATGTTTGTCTTATTTA
* * * **
412769 -GTCG-CAGGAACTTAGACTT-TA-CAAAAA--TTGGAGGG
121 AG-AGACA--AACTTTGA-TTCTATCAAAAACGGTGGA-AA
* ** * **
412804 GAAAATGCCTTTGTTGCAAAACTAAAACATCAATATCGCGTATCCTAATGAGAAG-ACTATGTTT
1 GAAAA-GCCTTTCTTGTGAAAC-CAAACATCAATATCATGTATCCTAAT-AGAAGAAC-ATGTTT
* * *
412868 ATGGTGCCTAATCCTGAAAAGAAT--ACGTATTAGTTTGATTATTCATGTTTGTCTTATTTAAGA
62 ATGGTGCCTAATCCTGAAAAGAATGGA-G-ATTAGTATGA-GAATCATGTTTGTCTTATTTAAGA
412931 GACAAACTTTGA---T-TCAAAAACGGTGGAAA
124 GACAAACTTTGATTCTATCAAAAACGGTGGAAA
* * * * *
412960 GAAAAGCCTTTCTTGTGACACCAAAGCTTCAATGTCATGTATCCTAA-CGAAGGAA-ATGTGTTT
1 GAAAAGCCTTTCTTGTGAAACCAAA-CATCAATATCATGTATCCTAATAGAA-GAACATGT-TTA
* * ** * * * *
413023 TGG-GATCCCAATCAT-AAAACTATGGAGACTA-T-T----A-CATGCTTGCCTTATTTAAGTGA
63 TGGTG--CCTAATCCTGAAAAGAATGGAGATTAGTATGAGAATCATGTTTGTCTTATTTAAGAGA
** * * * *
413079 TGAACTTTGATTTTATAGAAAATAAGG-GCAAA
126 CAAACTTTGATTCTAT-CAAAA-ACGGTGGAAA
* * ** ** * * * ** *
413111 GAAAAG-ATTTCCATGCAAAAAAAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGCTTA
1 GAAAAGCCTTT-CTTGTGAAACCAAA-CATCAATATCATGTATCCTAAT-AGAAGAACATGTTTA
* * * * * * *
413175 TAGTGCCTAATCAC--AAAATGAATGAAGATCATTACT-AGAATCCGTGTTAGTCTCATTT--GA
63 TGGTGCCTAATC-CTGAAAA-GAATGGAGATTAGTA-TGAGAAT-CATGTTTGTCTTATTTAAGA
* * ** *
413235 GGCATGAACTTAGACTT-TA-CAAAAATTAGTGGGAA
124 GACA--AACTTTGA-TTCTATCAAAAA-CGGTGGAAA
* * * **
413270 -AAATGCCTTTCTTGCGAATCCAAAACATCAATATCGCGTATCCTAATGAGAAG-ACTATGTTTA
1 GAAAAGCCTTTCTTGTGAAACC-AAACATCAATATCATGTATCCTAAT-AGAAGAAC-ATGTTTA
* * * * * * *
413333 TAGTGCCTAATCCTGAAAAAAAATGGGGATTAGTTTG-GCTATTCGTGTTTGCCTTATTTAAGAG
63 TGGTGCCTAATCCTG-AAAAGAATGGAGATTAGTATGAG--AATCATGTTTGTCTTATTTAAGAG
* *
413397 ACAAACTTTGATTCCATCAAAAACGGTGAAAA
125 ACAAACTTTGATTCTATCAAAAACGGTGGAAA
* * * * *
413429 GAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCT-ATTGAAAGGA-ATGGGTTT
1 GAAAAGCCTTTCTTGTGAAACCAAA-CATCAATATCATGTATCCTAATAG-AAGAACAT--GTTT
* * * * * * * * *
413492 TTGGTACCCAATCTTGAAAAGAAAGTAGATT-GTTACGAGAATCGATGCTTGTCTTATTTAAGGG
62 ATGGTGCCTAATCCTGAAAAGAATGGAGATTAG-TATGAGAATC-ATGTTTGTCTTATTTAAGAG
** * * * *
413556 ATGAACTTTGATTTTATGGAAAATA-AG-GCAAA
125 ACAAACTTTGATTCTAT-CAAAA-ACGGTGGAAA
* * ** ** * * * * *
413588 GAAAAG-ATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCGTAAT-G-TGGA-ATGTCCTT
1 GAAAAGCCTTT-CTTGTGAAACCAAA-CATCAATATCATGTATCCTAATAGAAGAACATGT--TT
* * * * * * * *
413649 GTAGTGCCTAATCAC--AAAATGAATGAAGGTGA-T-TGCTTGAATCCATGATTGTCTTATTTGA
62 ATGGTGCCTAATC-CTGAAAA-GAATGGAGATTAGTATG--AGAAT-CATGTTTGTCTTATTTAA
* ** * *
413710 G-GCACGAACTTAAACTT-T-GCAAAAATTGGTGGGAAA
122 GAG-ACAAACTTTGA-TTCTATCAAAAA-CGGT-GGAAA
* * * * * *
413746 G--ATGCCTGTCTTGCGAAAGCAAAGCATCAATATCATGTATCCTAAATAGAACAACATGCTTAT
1 GAAAAGCCTTTCTTGTGAAACCAAA-CATCAATATCATGTATCCT-AATAGAAGAACATGTTTAT
* * *
413809 GGTGCCTAATCCTGAAAAGAAT-AAGGATTAGTATGAGTATTCATGTTTGTCTTATGTAAGAGAC
64 GGTGCCTAATCCTGAAAAGAATGGA-GATTAGTATGAG-AATCATGTTTGTCTTATTTAAGAGAC
* *
413873 TAACTTTGATTCCATCAAAAACGGTGGAAA
127 AAACTTTGATTCTATCAAAAACGGTGGAAA
* ** * * ** *
413903 GAAAAGCCTTTCTTGCT-ACACCAAAGTTTCAATGTCATGTATCCTAATGGTGGAA-ATGTGTTT
1 GAAAAGCCTTTCTTG-TGAAACCAAA-CATCAATATCATGTATCCTAATAGAAGAACATGT-TTA
* * * * * * * * *
413966 TAGGTTCAC-AATCCTAAAAACAATGGAGACT-GTTACGAGAATTGATGCTTGGCTTATTCAAGA
63 T-GGTGC-CTAATCCTGAAAAGAATGGAGATTAG-TATGAGAA-TCATGTTTGTCTTATTTAAGA
* * * *
414029 GATAAAAC-TTGATTTTAT-AGAAAATAGG-GCAAA
124 GA-CAAACTTTGATTCTATCA-AAAA-CGGTGGAAA
* * ** ** * * **
414062 GAAAAG-ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAGTGAGGAA-AATGTGTTT
1 GAAAAGCCTTT-CTTGTGAAACCAAA-CATCAATATCATGTATCCTAAT-A-GAAGAACATGTTT
* * * * *
414125 ATAGTGTCTAATCAC--AAAATGAATGAAGATCATTACTG-GAATCCATGTTTGT-TTCATTT--
62 ATGGTGCCTAATC-CTGAAAA-GAATGGAGATTAGTA-TGAGAAT-CATGTTTGTCTT-ATTTAA
* * * * *
414184 GAGGCATGAAGTTAGACTT-TA-CAAAAAC--TGGCAG
122 GAGACA--AACTTTGA-TTCTATCAAAAACGGTGGAAA
* * *
414218 GTAAAATGCCTTTCTTGCGAAACCAAAACATCAATAT--TGCATATCCTAATGACAAG-ACTATA
1 G-AAAA-GCCTTTCTTGTGAAACC-AAACATCAATATCATG--TATCCTAAT-AGAAGAAC-ATG
* * * ** * *
414280 TTTATAGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTG-GCTTTTCATGTTTCTTTTATTTAA
59 TTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATGAG--AATCATGTTTGTCTTATTTAA
* * * **
414344 GAGACAAACTTTAATTCCATAAAAAATAGTGGAAA
122 GAGACAAACTTTGATTCTATCAAAAACGGTGGAAA
* * * * ***
414379 GAAAAG-CTATTCTTGGGACACCAAATCATCAATGTCATGTATCCATTTTAAT-G-GGATTGTGT
1 GAAAAGCCT-TTCTTGTGAAACCAAA-CATCAATATCATGTATCC----TAATAGAAGAACATGT
* * * ** * * *
414441 TTTTGGTTCCCAATTTTGAAAAGAATGAAGACT-GTTATGAGAATCAATGCTTGTCTTATTTAAG
60 TTATGGTGCCTAATCCTGAAAAGAATGGAGATTAG-TATGAGAATC-ATGTTTGTCTTATTTAAG
* * * * * * *
414505 ATATAAAATTTGATT-TTTTAGAAAATAGG-GCAAA
123 AGACAAACTTTGATTCTATCA-AAAA-CGGTGGAAA
* * *** ** * * * * ** *
414539 GAAAAG-ATTTCCATACAAAAGAAAATCTTCATTATCATTTATCCTAATGAGGAGAATGTGCTTA
1 GAAAAGCCTTT-CTTGTGAAACCAAA-CATCAATATCATGTATCCTAAT-AGAAGAACATGTTTA
* * * *
414603 TAGG-GCCTAAT--TACAAAATGAATGAAGA-TCGTTACT-AGAATCCATGTTTGT-TTCATTTG
63 T-GGTGCCTAATCCT-GAAAA-GAATGGAGATTAG-TA-TGAGAAT-CATGTTTGTCTT-ATTTA
* * * * **
414662 AG-GCACGAAGTTAGACTT-TA-CAAAAA--TTGGAGG
121 AGAG-ACAAACTTTGA-TTCTATCAAAAACGGTGGAAA
* * **
414695 GTAAAATGCCTTTCTTGCGAAACAAAAACATCAATATCACATATCCTAATGAGAAG-ACTATGTT
1 G-AAAA-GCCTTTCTTGTGAAAC-CAAACATCAATATCATGTATCCTAAT-AGAAGAAC-ATGTT
* * * *
414759 TATGGTGCCTAATCCT-AAAACGAATGGGGATTAGT-TCG-GCTATTCGTGTTTGCCTTATTTAA
61 TATGGTGCCTAATCCTGAAAA-GAATGGAGATTAGTAT-GAG--AATCATGTTTGTCTTATTTAA
*
414821 GAGACAAACTTTGATTCCATCAAAAACGGTGGAAAA
122 GAGACAAACTTTGATTCTATCAAAAACGGTGG-AAA
* * * * * * ** *
414857 AAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAGT-GAAGGGAATGTGTTTT
1 GAAAAGCCTTTCTTGTGAAACCAAA-CATCAATATCATGTATCCTAATAGAA--GAACATGTTTA
* * * * * *
414921 TGGTACCCAATCTTGAAAAGAATGTAGATT-GTTACGAGAATCGATGCTTGTCTTATTTAAGAGA
63 TGGTGCCTAATCCTGAAAAGAATGGAGATTAG-TATGAGAATC-ATGTTTGTCTTATTTAAGAGA
* * * * *
414985 TAAAATTTGATTTTAT-AGAAAATAGG-GCAAA
126 CAAACTTTGATTCTATCA-AAAA-CGGTGGAAA
* * * * * * ** *
415016 GAAAAG-ATTTCCATG-CAAA--AAA-A--AATCATCATTTCTCCTAAT-GAGGAATGTGCTTAT
1 GAAAAGCCTTT-CTTGTGAAACCAAACATCAAT-ATCATGTATCCTAATAGAAGAACATGTTTAT
* * * * * * * *
415073 AGTGCCTAATAAC--AAAATGATTGAAGATCATTACT-AGAATCCATGTTTGTCTCATTTGAG-G
64 GGTGCCTAAT-CCTGAAAA-GAATGGAGATTAGTA-TGAGAAT-CATGTTTGTCTTATTTAAGAG
* * **
415134 CACAAACTTAGGAAT-TA-CAATAATTGGTGG---
125 -ACAAACTT-TGATTCTATCAA-AAACGGTGGAAA
* ** *
415164 GAAAATGCCTTTCTTGTGAAACCAAAGCATCAATATCGTGTATGTTAAATAGAACAACATGTTTA
1 GAAAA-GCCTTTCTTGTGAAACCAAA-CATCAATATCATGTATCCT-AATAGAAGAACATGTTTA
* * * *
415229 TAGTGCCTAATCCTGAACAGAATGGGGATTAGTATGA-ATATTCTTGTTTGTCTTATTTAAGAGA
63 TGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATGAGA-A-TCATGTTTGTCTTATTTAAGAGA
* *
415293 CAAACTTTGATTCTATCAAAAACGATAGAAA
126 CAAACTTTGATTCTATCAAAAACGGTGGAAA
* * * * * * * *
415324 GAAAAGCC-TTCTTGCGATAGCAATGCTTTTAATGTCAGGTATCCTAATA-AAGGAA-ATGTGTT
1 GAAAAGCCTTTCTTGTGAAACCAA-AC-ATCAATATCATGTATCCTAATAGAA-GAACATGT-TT
* * * * * * * * * *
415386 TTACGTTCCCAATCCTAAAAACAATGGAGACT-GTTACGAGAATCAATGCTTGTGTTATTTAAGA
62 AT-GGTGCCTAATCCTGAAAAGAATGGAGATTAG-TATGAGAATC-ATGTTTGTCTTATTTAAGA
* * * * *
415450 GATGAAA-TTTTATTTTAT-AGAAAATTGG-GCAAA
124 GA-CAAACTTTGATTCTATCA-AAAA-CGGTGGAAA
* * ** ** * * * ** *
415483 GAAAAG-ATTTCCATGCAAAAGAAAATTATTAATATCATTTATCCTAATGAGAAGAATGTGCTTA
1 GAAAAGCCTTT-CTTGTGAAACCAAA-CATCAATATCATGTATCCTAAT-AGAAGAACATGTTTA
* * * * * * * * * *
415547 TAGTACCTAATCAC--AAAATGAATGAAGATCATTACT-AGAATCCTTGTTAGTCTCAATTGAG-
63 TGGTGCCTAATC-CTGAAAA-GAATGGAGATTAGTA-TGAGAAT-CATGTTTGTCTTATTTAAGA
* * * * *** *
415608 GCGCGAACTTAGA-CCT-TACAAAAATTTATGGGAA
124 G-ACAAACTTTGATTCTAT-CAAAAA-CGGTGGAAA
* ** * ** * **
415642 -AAAAGCCTTTCCTGCAAAACCAAA-ATGTCAGTATCGCGTATCCTAATGAGAAGACCATGGATA
1 GAAAAGCCTTTCTTGTGAAACCAAACA--TCAATATCATGTATCCTAAT-AGAAGAACATGTTTA
* *
415705 TGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATG-GCTATTCATGTTTGTCTTATTTAAGAGA
63 TGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATGAG--AATCATGTTTGTCTTATTTAAGAGA
* *
415769 CAAACTTTGATTCCATCAAAAACGGTGAAAA
126 CAAACTTTGATTCTATCAAAAACGGTGGAAA
* * * * * ** *
415800 GAAATGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCT-ATTGAAGGGAATGTGTTTT
1 GAAAAGCCTTTCTTGTGAAACCAAA-CATCAATATCATGTATCCTAATAGAA--GAACATGTTTA
* * * * * * * *
415864 TGGTACCCAATCTTGAAAAGAATGTAGATT-GTTACGAGAATTGATGCTTGTCTTATTTAAGGGA
63 TGGTGCCTAATCCTGAAAAGAATGGAGATTAG-TATGAGAA-TCATGTTTGTCTTATTTAAGAGA
** * * *
415928 TGAACTTTGATTTTATGGAAAATAAGGT--AAA
126 CAAACTTTGATTCTAT-CAAAA-ACGGTGGAAA
* * ** ** * * * * * *
415959 GAAAAG-ATTTCCATGCAAAAGAAAATCGTCAATATCATTTCTCCTAAT-GAGGAATATGCTTAT
1 GAAAAGCCTTT-CTTGTGAAACCAAA-CATCAATATCATGTATCCTAATAGAAGAACATGTTTAT
* * * * * * * *
416022 AGTGCCTAATAAC--AAAATGATTGAAGATCA-TTTCTAGAATCCATGTTAGTCTTATTT--GAG
64 GGTGCCTAAT-CCTGAAAA-GAATGGAGATTAGTAT-GAGAAT-CATGTTTGTCTTATTTAAGAG
* ** *
416082 GCAGGAACTTTGACTT-TA-CAAAAATTAGTGGGAA
125 ACA--AACTTTGA-TTCTATCAAAAA-CGGTGGAAA
* * ** *
416116 -AAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCTTAATGAGAAG-ACTATGTTTA
1 GAAAAGCCTTTCTTGTGAAACC-AAACATCAATATCATGTATCCTAAT-AGAAGAAC-ATGTTTA
* * * * *
416179 TTGTGCCTAATCCTGAAAAAAAGGGGGATTAGTATG-GCTATTCATGTTTGTCTTATTTAAGAGA
63 TGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATGAG--AATCATGTTTGTCTTATTTAAGAGA
* * *
416243 CAAACTTTGATTCCATCAAAAATGGTGGAAG
126 CAAACTTTGATTCTATCAAAAACGGTGGAAA
* * * * * ** *
416274 GAAAAGCCTTTCTTGCGACACCAAAGCATCAATGTCATGTATCAT-ATTGAAGGGAATGTGTTTT
1 GAAAAGCCTTTCTTGTGAAACCAAA-CATCAATATCATGTATCCTAATAGAA--GAACATGTTTA
* * * * * * * ** * *
416338 TAGTACCTAATCCTAAAAACAATGGAGAGTATTACGAGAATCGATACTTGTCTTATTTAAGGGAT
63 TGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATGAGAATC-ATGTTTGTCTTATTTAAGAGAC
* * * * *
416403 GAACTTTGATTTTATGGAAAATA-AG-GCAAA
127 AAACTTTGATTCTAT-CAAAA-ACGGTGGAAA
** * ** ** * * *
416433 GAAAA-AATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT-GAGGAAAATGTGCTT
1 GAAAAGCCTTT-CTTGTGAAACCAAA-CATCAATATCATGTATCCTAATAGAAGAACATGT--TT
* * *
416496 ATAGTGCCTAATCAC--AAAATGAAT-GACGATCATTACT-AGAATCCATGTTTGT-TTCATTTA
62 ATGGTGCCTAATC-CTGAAAA-GAATGGA-GATTAGTA-TGAGAAT-CATGTTTGTCTT-ATTTA
* * * **
416556 AG-G-CATGAAGTTAT-ACTT-TA-CAAAAATTGGCGGGTA
121 AGAGACA--AACTT-TGA-TTCTATCAAAAA-CGGTGGAAA
* * * * *
416592 -AAATGCCTTTCTTGCGAAAACAAAGCATCAATATCGTGTATCCTAAATAGAACAACATGTTTAT
1 GAAAAGCCTTTCTTGTGAAACCAAA-CATCAATATCATGTATCCT-AATAGAAGAACATGTTTAT
* * * * * * *
416656 GGTTCCTAAACTTGAAAAGAATAGG-GATTAGTATGAGTATTCAGGTTTGTTTTATTTAAGAGGC
64 GGTGCCTAATCCTGAAAAGAAT-GGAGATTAGTATGAG-AATCATGTTTGTCTTATTTAAGAGAC
* * *
416720 AAACCTTGATTCCATCAAAAATGGTGGAAA
127 AAACTTTGATTCTATCAAAAACGGTGGAAA
* ** * * * ** *
416750 GAAAAGCCTTTCTTGCGATGCCAAAGCATCAATATCCTGTATCAT-ATTGAAGGGAATGTGTTTT
1 GAAAAGCCTTTCTTGTGAAACCAAA-CATCAATATCATGTATCCTAATAGAA--GAACATGTTTA
* * * * ** * * *
416814 TAGTACCTAATCCTAAAAACAATGGAGGCT-GCTACGAGAATCGATG-CTGTCTTATTTAAGGGA
63 TGGTGCCTAATCCTGAAAAGAATGGAGATTAG-TATGAGAATC-ATGTTTGTCTTATTTAAGAGA
** * * * *
416877 TGAACATTGATTTTATGGAAAATA-GG-GCAAA
126 CAAACTTTGATTCTAT-CAAAA-ACGGTGGAAA
** * * ** * * * *
416908 GAAAA-AATTTCCATG-CAAATGAAA-ATTGTCAATATCATTTATCCTAATGAGAAAAATATGCT
1 GAAAAGCCTTT-CTTGTGAAACCAAACA---TCAATATCATGTATCCTAAT-AGAAGAACATGTT
* * * * *
416970 TATAGTGCCTAATCAC--AAAATGAATGAAGATCATTACT-AGAATCCATTTTTGT-TTCATTT-
61 TATGGTGCCTAATC-CTGAAAA-GAATGGAGATTAGTA-TGAGAAT-CATGTTTGTCTT-ATTTA
* * * * *
417030 -GAGGCATGAAGTTAT-ACTT-TA-CAAAAA--TTGGCAG
121 AGAGACA--AACTT-TGA-TTCTATCAAAAACGGTGGAAA
* * * *** *
417064 GTAAAATGCCTTTCTTGCGAAACCAAAACATTAATGTCGCATATCCTAATGAGAAG-ACTATATT
1 G-AAAA-GCCTTTCTTGTGAAACC-AAACATCAATATCATGTATCCTAAT-AGAAGAAC-ATGTT
* * * * * * *
417128 TATGGTGCCTAATCCTAAAAAGATTGGGGATTAGTTTGACTATTCATGTTTGTCTTATTTAGGAG
61 TATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATGA-GAATCATGTTTGTCTTATTTAAGAG
* * * *
417193 ACAAACTTTGATTCCATAAAAAATGGTAGAAA
125 ACAAACTTTGATTCTATCAAAAACGGTGGAAA
* * * *
417225 GAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTA
1 GAAAAGCCTTTCTTGTGAAACCAAA-CATCAATATCATGTATCCTA
417271 TTGATGGGAA
Statistics
Matches: 7692, Mismatches: 2314, Indels: 1885
0.65 0.19 0.16
Matches are distributed among these distances:
146 27 0.00
148 7 0.00
149 23 0.00
150 76 0.01
151 127 0.02
152 40 0.01
153 44 0.01
154 72 0.01
155 147 0.02
156 262 0.03
157 801 0.10
158 2252 0.29
159 2953 0.38
160 688 0.09
161 157 0.02
162 11 0.00
163 5 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.31
Consensus pattern (156 bp):
GAAAAGCCTTTCTTGTGAAACCAAACATCAATATCATGTATCCTAATAGAAGAACATGTTTATGG
TGCCTAATCCTGAAAAGAATGGAGATTAGTATGAGAATCATGTTTGTCTTATTTAAGAGACAAAC
TTTGATTCTATCAAAAACGGTGGAAA
Found at i:407238 original size:476 final size:476
Alignment explanation
Indices: 405826--417292 Score: 14259
Period size: 476 Copynumber: 24.2 Consensus size: 476
405816 TTGTCATCAA
* * *
405826 ATTCCATAAAAAACGGTGGAAAGTATAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
1 ATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
* *
405891 CTATTGATGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGA-C-TATAATGAGAATC
66 CTATTGAAGGGAATGTGTTTTTGG-TCCCAATCTTGAAAAGAATGGAGATCGT-T-ACGAGAATC
* *
405954 AATGCTTGTCTTATTTGAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTC
128 GATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTC
* * * *
406019 CAAGCAAAA-AAAATCGTCAATATCATTTATCCTAATGAGGAGAATGTGCATAAAGTGCCTAATC
193 CATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATC
* * * * ** *
406083 ACAAAATGAATAAAAATCATTACTATAATCCATGTTTGTCTCATTTGACGCACAAACTTAAACTT
258 ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTT
* * * *
406148 TACAAAAATTGGTGGG-AAAATGCCTTTCTTGTGAAACCAGAACATCAATATTGTGTATCCTAAT
323 TACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAAT
* * * *
406212 GAAAAGAAC-ATGTTTATGGTGCCTAATCCTTAAAAGAATGGGGATTAGTATGTGTATTCTTGTT
388 GAGAAG-ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTT
*
406276 TGTCTTATTTAAGAGACAAACATTG
452 TGTCTTATTTAAGAGACAAACTTTG
* * * * *
406301 ATTCTATGAAAAACGGTAGAAAGAAAAGCTTTCCTTGCGACACCAAACCATCAATGTCATGTATC
1 ATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
* * *
406366 CTATTGAAGAGAATGTGTTTTTGGTACCAAATCTTTG-AAAGAATGGAGATTGTTACGAGAATCG
66 CTATTGAAGGGAATGTGTTTTTGGT-CCCAATC-TTGAAAAGAATGGAGATCGTTACGAGAATCG
* * * * *
406430 ATGCTTGTCTTATTTAGGGGTTGAACTTTTATTTTATGGAAAATAA-GGCAAAGAAAGGATTTTC
129 ATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCC
* * *
406494 ATGTAAAAGAAAATCATCAATATCATTTATCCTAGTGA-G-GAATGTGCTTATAGTGCCTAATTA
194 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCA
* *
406557 GAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGACTTT
259 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTT
* **
406622 ACAAAAATTGGTGGGAAAAATGCCTTTCTTGCAAAACCAAAACATCAATATCATGTATCCTAAAT
324 ACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCT-AAT
* *
406687 -AGAACAAC-ATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTACTCATGTT
388 GAGAA-GACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTT
406750 TGTCTTATTTAAGAGACAAACTTTG
452 TGTCTTATTTAAGAGACAAACTTTG
* * *
406775 ATTCAATCAAAAACGGTGGAAAGAAAAGCCTTTCTTGTGACACCAAAGCATCAATGTCATGTATC
1 ATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
* * * *** * * *
406840 CTATTGATGCGAATGCGTTTTTGGTATGTAATCCTGAAACA-AATGTAGATCGTTATGAGAATCG
66 CTATTGAAGGGAATGTGTTTTTGGT-CCCAATCTTGAAA-AGAATGGAGATCGTTACGAGAATCG
406904 ATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCC
129 ATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCC
* * * *
406969 AAGCAAAAG-AAATCACCAATATCAGTTATCCTAATGAGGAAAATGTGCTTATAGTGCCTAATCA
194 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCA
** * ** * *
407033 CAAAATGAATGAAGATCATTTTTAGAATCCATGTTAGTCTCATTTGAGGCACAAACTTAAAATTT
259 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTT
* * * *
407098 ACAAAAATTAGTGGGAAAAATGCCTTTCTTGAGAAACCAAAACATCAATATCGCATATCCTAACG
324 ACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATG
* * * * * * *
407163 AGAAGACTATGTTTATGGTGCCTAATCTTGAAAAAAATGGGGAATAGAATGAGTATGCAAGCTTG
389 AGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTG
* *
407228 CCTTATTTAAGAGACAAACTTTA
454 TCTTATTTAAGAGACAAACTTTG
* ***
407251 ACTATGTCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
1 ATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
* * * * * * *
407316 CTATTGATGGGAATGTG-TTTTGG-CATGCAACCCTGAAACGAATGTAGATTGTTACGAGAATCG
66 CTATTGAAGGGAATGTGTTTTTGGTC--CCAATCTTGAAAAGAATGGAGATCGTTACGAGAATCG
* * *
407379 ATGCTTGTCTTATTTAAGGGGTGAACTTCGATTTTATGGAAAATAA-GGCAAAGAAACGATTTCC
129 ATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCC
* * * *
407443 TTTCAAAAGAAAATCATCAATATCATTTCTCCTAATGA-G-GAATGTGCTTATAATGCCTAATCA
194 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCA
* *
407506 CAAAATGAATGAAGATCATTATTAGAATCCATGTTTGTCTTATTTGAGGCATGAACTTAGACTTT
259 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTT
* * * * * *
407571 ACAAAAATTGGTGGGAAAAATGCCTTT-TTCGTGAAACCTAAACATGAATAGCGCGTTTCCTAAA
324 ACAAAAATTGGTGGGAAAAATGCCTTTCTT-GCGAAACCAAAACATCAATATCGCGTATCCTAAT
* * * * * * *
407635 GAGAAGATTGTATTTATCGTGCCTAATCCTG--AA-AA----GACTAGTACGTGTATTCATGTTT
388 GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTT
* *
407693 GTC-T-TTAAAGAGAGAAACTTTG
453 GTCTTATTTAAGAGACAAACTTTG
* * * * * ** *
407715 ATTCTATCAAAAACAGAGAAAAGAAAAGCTTTTCTTGCGATACCAAAGCATCAATGTTGTGTTTC
1 ATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
* * * * *
407780 CTACTGAAGGGACAT-TGTTTTTAGCTCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCA
66 CTATTGAAGGGA-ATGTGTTTTT-GGTCCCAATCTTGAAAAGAATGGAGATCGTTACGAGAATCG
* **
407844 ATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTTTGGAAAAT-AGGGCAAAGAAAAGATTTTG
129 ATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCC
* * * * * *
407908 ATACAAAAGAAAATCACCAAAATCTTTTATCTTAATGAGGGGAATGTGCTTATAGTGCCTAATCA
194 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCA
* * * * * * *
407973 CAAAATGAATGAAGATCATTCCTAGGATCCATGTTTGTCTTATTTGATGCACGAACTTAAAATTT
259 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTT
* * ***
408038 ACAAAAATTAGTAGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATAATGTATCCTAATG
324 ACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATG
* * * *
408103 AGAAGCAC-ATGTTTATGGTGCCTAATCCTGAAAAGAACGAGGACTAGTATGTGTATTCATGTTT
389 AGAAG-ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTT
* *
408167 GTC-T-TTAAAGAGAGAAACTTTG
453 GTCTTATTTAAGAGACAAACTTTG
* * * *
408189 ATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCTTGTATC
1 ATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
** * * *
408254 CTATTGAAAAGAATGTGTTTTTGGTACCCAATCTTGGAAAGAATGGAGA-CTGTTATGAGCATCG
66 CTATTGAAGGGAATGTGTTTTTGGT-CCCAATCTTGAAAAGAATGGAGATC-GTTACGAGAATCG
* * ** *
408318 TTGCTTGTCTTATTTAAGGGATGAACTTTTATTTTATACAAAAT-AGGGCAAAGAAAAGATTTCG
129 ATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCC
* *
408382 ATGCAAAA-AAAATCATCAATATCATTTATCCTAGTGAGGAGAATGTGCTTATAGTGCCTAATAA
194 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAAT-C
* ** * * * *
408446 AAAAAATGAATGGCGACCATTACAAGAATCCATCTTTGTCTCTTTTGAGGCATGAACTTAGACTT
258 ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTT
* * * *
408511 TACAAAAATTGGTGAGAAAAATGCCATTCTTGCGAAACCAAAACATCAATATCGCATATCCTAAA
323 TACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAAT
* * * *
408576 GAGAAGACTATATTTATGGTGCCTAATCCAGAAAAGAATGGGGATTAGTTTGACTATTCATGTTT
388 GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTT
408641 GTCTTATTTAAGAGACAAACTTTG
453 GTCTTATTTAAGAGACAAACTTTG
* *
408665 ATTCCATCAAAAACGGTGGAAAGAATAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATC
1 ATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
* * * * * *
408730 CTACTGATGGGAATTTGTTTTTGGTTCCGAATATTGAAAAGAACGGAGA-CTGTTACGAGAATCG
66 CTATTGAAGGGAATGTGTTTTTGG-TCCCAATCTTGAAAAGAATGGAGATC-GTTACGAGAATCG
* *
408794 ATGCTTGTCTTATTTAAGGGATGAACTTTGA-TTTATAGAAAATAAGGGCAAAGAAAAGATTTTC
129 ATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCC
* * * * *
408858 AAGCAAAA-AAATTCATCAATATCATATATCCTAATGAGGAAAATGGGCTTATAGTGCCTAATCA
194 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCA
* * *
408922 CAAAAAGAGTGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGACGTGCA--AACTTAAACT
259 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA-G-GCATGAACTTAGACT
* * ** *
408985 TTGCAAAAATTGGTGGGAAAAATGCGTTTCTTGATAAACCAAAACATCAATATCGTGTATCCTAA
322 TTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAA
*
409050 TGAAAAGAAC-ATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGT
387 TGAGAAG-ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGT
*
409114 TTGCCTTATTTAACG-GACAAACTTTG
451 TTGTCTTATTTAA-GAGACAAACTTTG
* * * * * * * *
409140 ATTCTATCAAAAATGGTGGAAAG-AAAGCCTTTCTTGCAACCCCACAGCTTCAACGTCATGTATC
1 ATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
* ** * * * * * *
409204 CTAATGGCGGAAATGTGTTTTAGGTTCCCAATCTTAAAAACAATGGAGA-CTGTTACAAGAAACG
66 CTATTGAAGGGAATGTGTTTTTGG-TCCCAATCTTGAAAAGAATGGAGATC-GTTACGAGAATCG
* * * *
409268 ATGCTTGTCTTATTTAAGAGATAAAATTTGATTTTATAGAAAAT-AGGGCAAAG-AAAGATTTCC
129 ATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCC
* * * *
409331 ATGCAAAA-AAAAACATCAATATCATTTATCCTAATGAGGAGAATGTGGTTATAGTGCCGAATTA
194 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCA
* * * *
409395 CAAAATG-A--AAGATCATTACTAGAATCCATGTTTGTTTCATTTGAGGAATGAAGTTAGACTTC
259 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTT
** ** * * *
409457 ACAAAAATTGGCAGCTATAATGCCTTTCTTGCAAAACCAAAACATCAATATCACGTATCCTAATG
324 ACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATG
* * * * *
409522 AAAAGACTATATTTATGATGCCTAATCCTGAAAAGAATGGGGATTAGTTTGACTATTCATGTTTG
389 AGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTG
*
409587 TCTTATTTAAGAGACAAGCTTTG
454 TCTTATTTAAGAGACAAACTTTG
* *
409610 ATTCCATAAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATTAATGTCATGTATC
1 ATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
** * *
409675 CTATTGATTGGAATGTGTTTTTGGTTCTCAATCTTGAAAAGAATGGAGA-CTGTTATGAGAATCG
66 CTATTGAAGGGAATGTGTTTTTGG-TCCCAATCTTGAAAAGAATGGAGATC-GTTACGAGAATCG
* * * *
409739 ATGCTTGTCTTATATAAGGGATGAACTTTGATTTTATGGAAAATATGAGCAAAGAAAATATTTCC
129 ATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCC
* * * *
409804 AAGCAAAA-AAAATCATCAATATCATTTATCATAATAACGAGAATGTGCTTATAGTGCCTAATCA
194 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCA
** * ** * *
409868 CAAAATGAATGAAGATCATTTTTAGAATCCATGTTAGTCTCATTTGAGGCACAAACTTAAAATTT
259 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTT
* * * *
409933 ACAAAAATTAGTGGAAAAAATGCCTTTCTTGCGAAACCAAAATATCAATATCGCGTATCCTTATG
324 ACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATG
* *
409998 AGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAAGGGGGATTAGTATGAGTATTCATGTTTG
389 AGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTG
410063 TCTTATTTAAGAGACAAACTTTG
454 TCTTATTTAAGAGACAAACTTTG
* * *
410086 ATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTGTTGCGACACCAAAGCATCAATGTCTTGTATC
1 ATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
*
410151 CTATTGAAGGG-ATAGTGTTTTTGGCTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCG
66 CTATTGAAGGGAAT-GTGTTTTTGG-TCCCAATCTTGAAAAGAATGGAGATCGTTACGAGAATCG
410215 ATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAA-GGCAAAGAAAAGATTTCC
129 ATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCC
* * *
410279 ATTCAAAAGAAAATCATCAATATCATTTCTCCTAAT-AAG-GAATGTGCTTATAGTGCCTAATCA
194 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCA
* * **
410342 CAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTATCATTTGAGGCACAAACTTAGACTTT
259 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTT
* * * * * *
410407 ACAATAATTGGTAGGG-AAAATGCATTTCTTGTGAAATCAAAGCATCAATATCGTGTATCCTAAT
324 ACAAAAATTGGT-GGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAAT
* *
410471 GAGAAGACTATGTTTATGGCGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTACTCATGTTT
388 GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTT
*
410536 GTCTTATTTAAGAGAAAAACTTTG
453 GTCTTATTTAAGAGACAAACTTTG
* * * * *
410560 ATTCTATCAAAAATGGTGGAAAGAAAAGCCTTTCTTGCGACACCTAAGCATCAATGTCATGCATC
1 ATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
* * * * ** *
410625 CTAATGAAGGAAATGTGTTTTAGGCTCCCAATCCT-ATAAACTATGGAGAGT-ATTACGAGAATC
66 CTATTGAAGGGAATGTGTTTTTGG-TCCCAATCTTGA-AAAGAATGGAGA-TCGTTACGAGAATC
* * ** * *
410688 AATGCTTGTCTTATTCAAGGGATGGGCTTTGATTTTGTGAAAAAT-AGGGCAAAGAAAAGATTTC
128 GATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTC
* * *
410752 CATGCAAAAGAAAATCATCAATATCATTTATCTTAATGAGGAGAATGTGCTTATCGTGCCTAGTC
193 CATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATC
* * * *
410817 ACAAAATGAATGAAGATCATGACTAGAATCCACGTTTGTCTTATTCGAGGCATGAACTTAGACTT
258 ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTT
* * * * *
410882 TACAAAAATTAGTGGGAAAAATGCTTTTCTTAC-AAATCCAAAATATCAATATCGCATATCCTAA
323 TACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAA-CCAAAACATCAATATCGCGTATCCTAA
* * * * *
410946 TGAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTTTGACTATTCATATT
387 TGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTT
*
411011 TGTCTTATCTAAGAGACAAACTTTG
452 TGTCTTATTTAAGAGACAAACTTTG
* * * *
411036 ATTCCATCAAAAACGATGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCAAGCATC
1 ATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
* * * * * *
411101 CTATTG-AGTAGAATGTTTTTTTGGTACCTAATATTGGAAAGAATGGAGATTGTTACGAGAATCG
66 CTATTGAAG-GGAATGTGTTTTTGGT-CCCAATCTTGAAAAGAATGGAGATCGTTACGAGAATCG
*
411165 ATGCTTGTCTTATTTAAGGGATGAACTTTTATTTTATGGAAAATAA-GGCAAAGAAAAGATTTCC
129 ATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCC
* * * * * * *
411229 ATGCAAATGAAAATCATTAATACCATTCATCCTAGTGACGAGAATGTGCTTATAGTACCTAATCA
194 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCA
* *
411294 CAAAATGATTGACGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTT
259 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTT
* * * * * ** *
411359 ACAAAAAGTGGTTGGAAAAATACCTCTCTCGCGAAACCAAAACATCTGTATCGCGTATCCTAAAG
324 ACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATG
* * * *
411424 AAAAGACTATATTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATG-GCTATTCGTGTTT
389 AGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAG-TATTCATGTTT
* *
411488 GTCTTATTTAATAGGCAAACTTTG
453 GTCTTATTTAAGAGACAAACTTTG
** * * *
411512 A-TCCATCAAAAATAGTGGAAAGAAATGCTTTTCTTGCGACTCCAAAGCATCAATGTCATGCATC
1 ATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
* * * * *
411576 CTATTAAAAGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGATTGTAGATTGTTACGAGAATTG
66 CTATT-GAAGGGAATGTGTTTTTGGT-CCCAATCTTGAAAAGAATGGAGATCGTTACGAGAATCG
* * **
411641 ATGCTTATCTTATTTAAGGGATGAGCTAGGATTTTATGGAAAATAAGGG-AAAGAAAAGATTTCC
129 ATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCC
* * **
411705 ATGGAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTACCTAGCCA
194 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCA
* * * * *
411770 GAAAATGAATGAAGATCATTACTAGAATCCGTATTTGTCTCATTTGAGGCATGCACTTAAACTTT
259 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTT
* ** **
411835 ACAAAAATTGGTGGGAAAAAGGCCTTTCTTGCGAAACCAAAGGATCAATATCATGTATCCTAAAT
324 ACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCT-AAT
* * *
411900 -AGAACAAC-ATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTACTCATGTT
388 GAGAA-GACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTT
411963 TGTCTTATTTAAGAGACAAACTTTG
452 TGTCTTATTTAAGAGACAAACTTTG
* * * * * *
411988 ATTCTATCAAAAACAGTGGAAAGAAAAGCCTTTCTTGCGACACCAAAGCTTCAATGTCATATATG
1 ATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
* * * * * * * *
412053 CTAATGAAGGAAATGTGTTTTAGGTTCCCAATCCTAAAAACAATTGAGA-C-TATGACAAGAATC
66 CTATTGAAGGGAATGTGTTTTTGG-TCCCAATCTTGAAAAGAATGGAGATCGT-T-ACGAGAATC
* * * *
412116 GATGCTTATCTTATTTAAGGGTTGAAATTAGATTTTATGGAAAAT-AGGGCACAA-AAAAGATTT
128 GATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCA-AAGAAAAGATTT
* * *
412179 CCATGCAAAAGAAAATCATTAATATCATTTATCCTAATGAGGAGAATATGCTTATAATGCCTAAT
192 CCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAAT
* * *
412244 CACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTTTCATTTGAGGCGTGAAGTTAGACT
257 CACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACT
* * ** * *
412309 TTACAAAAATTGGCGGGTAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCATGCATCCTTA
322 TTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAA
* * * * *
412374 TGAGAAGACAATATTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTTTGACTATTCATGTT
387 TGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTT
*
412439 TGCCTTATTTAAGAGACAAACTTTG
452 TGTCTTATTTAAGAGACAAACTTTG
* * ** * *
412464 ATTCCAACAAAAACGATCAAAATAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATC
1 ATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
* ** * *
412529 CTATTGATGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGA-CTGGAATGAGAATCA
66 CTATTGAAGGGAATGTGTTTTTGG-TCCCAATCTTGAAAAGAATGGAGATC-GTTACGAGAATCG
* * *
412593 ATGCTTGTCTTTTTTAGGGGATGAACTTTGATTTTATGGAAAGTAAGGGCAAAGAAAAGATTTCC
129 ATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCC
* * *
412658 ACGCAAAAAGAAAATCGTCAATATCATTAATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATC
194 ATGC-AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATC
* * * * * ** *
412723 ACAAAGTAAATAAAGATCATTACTAGAATCTATGTTAGTCTCATTTGTCGCAGGAACTTAGACTT
258 ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTT
* * * * *
412788 TACAAAAATTGGAGGGGAAAATGCCTTTGTTGCAAAACTAAAACATCAATATCGCGTATCCTAAT
323 TACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAAT
** * * *
412853 GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATACGTATTAGTTTGATTATTCATGTTT
388 GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTT
412918 GTCTTATTTAAGAGACAAACTTTG
453 GTCTTATTTAAGAGACAAACTTTG
* * *
412942 A-T---TCAAAAACGGTGGAAAGAAAAGCCTTTCTTGTGACACCAAAGCTTCAATGTCATGTATC
1 ATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
** * * * ** **
413003 CTAACGAAGGAAATGTGTTTTGGGATCCCAATCAT-AAAACTATGGAGA-C--T---ATTA-C-A
66 CTATTGAAGGGAATGTGTTTTTGG-TCCCAATCTTGAAAAGAATGGAGATCGTTACGAGAATCGA
* * *
413059 TGCTTGCCTTATTTAAGTGATGAACTTTGATTTTATAGAAAATAAGGGCAAAGAAAAGATTTCCA
130 TGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCA
* *
413124 TGCAAAAAAAAATCATTAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCAC
195 TGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCAC
* *
413189 AAAATGAATGAAGATCATTACTAGAATCCGTGTTAGTCTCATTTGAGGCATGAACTTAGACTTTA
260 AAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTA
* *
413254 CAAAAATTAGTGGGAAAAATGCCTTTCTTGCGAATCCAAAACATCAATATCGCGTATCCTAATGA
325 CAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGA
* * * *
413319 GAAGACTATGTTTATAGTGCCTAATCCTGAAAAAAAATGGGGATTAGTTTG-GCTATTCGTGTTT
390 GAAGACTATGTTTATGGTGCCTAATCCTG-AAAAGAATGGGGATTAGTATGAG-TATTCATGTTT
*
413383 GCCTTATTTAAGAGACAAACTTTG
453 GTCTTATTTAAGAGACAAACTTTG
* *
413407 ATTCCATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATC
1 ATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
* * * * *
413472 CTATTGAAAGGAATGGGTTTTTGGTACCCAATCTTGAAAAGAAAGTAGATTGTTACGAGAATCGA
66 CTATTGAAGGGAATGTGTTTTTGGT-CCCAATCTTGAAAAGAATGGAGATCGTTACGAGAATCGA
413537 TGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAA-GGCAAAGAAAAGATTTCCA
130 TGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCA
* * * * *
413601 TGCAAAAGAAAATCATCAATATCATTTCTCGTAATG-TG-GAATGTCCTTGTAGTGCCTAATCAC
195 TGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCAC
* * * * * * * * *
413664 AAAATGAATGAAGGTGATTGCTTGAATCCATGATTGTCTTATTTGAGGCACGAACTTAAACTTTG
260 AAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTA
* * * * **
413729 CAAAAATTGGTGGGAAAGATGCCTGTCTTGCGAAAGCAAAGCATCAATATCATGTATCCTAAAT-
325 CAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCT-AATG
* * **
413793 AGAACAAC-ATGCTTATGGTGCCTAATCCTGAAAAGAATAAGGATTAGTATGAGTATTCATGTTT
389 AGAA-GACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTT
* *
413857 GTCTTATGTAAGAGACTAACTTTG
453 GTCTTATTTAAGAGACAAACTTTG
* * **
413881 ATTCCATCAAAAACGGTGGAAAGAAAAGCCTTTCTTGCTACACCAAAGTTTCAATGTCATGTATC
1 ATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
* ** * * * * * * *
413946 CTAATGGTGGAAATGTGTTTTAGGTTCACAATCCTAAAAACAATGGAGA-CTGTTACGAGAATTG
66 CTATTGAAGGGAATGTGTTTTTGG-TCCCAATCTTGAAAAGAATGGAGATC-GTTACGAGAATCG
* * * * *
414010 ATGCTTGGCTTATTCAAGAGATAAAAC-TTGATTTTATAGAAAAT-AGGGCAAAGAAAAGATTTC
129 ATGCTTGTCTTATTTAAGGGAT-GAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTC
* * * *
414073 CATGCAAAAGAAAATCATCAATATCATTTATCCTAGTGAGGAAAATGTGTTTATAGTGTCTAATC
193 CATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATC
* * *
414138 ACAAAATGAATGAAGATCATTACTGGAATCCATGTTTGTTTCATTTGAGGCATGAAGTTAGACTT
258 ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTT
* ** * * *
414203 TACAAAAACTGGCAGGTAAAATGCCTTTCTTGCGAAACCAAAACATCAATATTGCATATCCTAAT
323 TACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAAT
* * * * *
414268 GACAAGACTATATTTATAGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTG-GCTTTTCATGTT
388 GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAG-TATTCATGTT
* * *
414332 TCTTTTATTTAAGAGACAAACTTTA
452 TGTCTTATTTAAGAGACAAACTTTG
* ** * * *
414357 ATTCCATAAAAAATAGTGGAAAGAAAAGCTATTCTTGGGACACCAAATCATCAATGTCATGTATC
1 ATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
* * * * *
414422 C-ATTTTAATGGGATTGTGTTTTTGGTTCCCAATTTTGAAAAGAATGAAGA-CTGTTATGAGAAT
66 CTA-TTGAA-GGGAATGTGTTTTTGG-TCCCAATCTTGAAAAGAATGGAGATC-GTTACGAGAAT
* ** * * * *
414485 CAATGCTTGTCTTATTTAAGATATAAAATTTGATTTTTTAGAAAAT-AGGGCAAAGAAAAGATTT
127 CGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTT
* * * *
414549 CCATACAAAAGAAAATCTTCATTATCATTTATCCTAATGAGGAGAATGTGCTTATAGGGCCTAAT
192 CCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAAT
* * * * *
414614 TACAAAATGAATGAAGATCGTTACTAGAATCCATGTTTGTTTCATTTGAGGCACGAAGTTAGACT
257 CACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACT
* * * * *
414679 TTACAAAAATTGGAGGGTAAAATGCCTTTCTTGCGAAACAAAAACATCAATATCACATATCCTAA
322 TTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAA
*
414744 TGAGAAGACTATGTTTATGGTGCCTAATCCT-AAAACGAATGGGGATTAGT-TCG-GCTATTCGT
387 TGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAA-GAATGGGGATTAGTAT-GAG-TATTCAT
*
414806 GTTTGCCTTATTTAAGAGACAAACTTTG
449 GTTTGTCTTATTTAAGAGACAAACTTTG
*
414834 ATTCCATCAAAAACGGTGGAAAAAAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAT
1 ATTCCATCAAAAACGGTGG-AAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAT
* * *
414899 CCTAGTGAAGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAATGTAGATTGTTACGAGAATCG
65 CCTATTGAAGGGAATGTGTTTTTGGT-CCCAATCTTGAAAAGAATGGAGATCGTTACGAGAATCG
* * * *
414964 ATGCTTGTCTTATTTAAGAGATAAAATTTGATTTTATAGAAAAT-AGGGCAAAGAAAAGATTTCC
129 ATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCC
* *
415028 ATGCAAAA-AAAA--ATC---ATCATTTCTCCTAATGA-G-GAATGTGCTTATAGTGCCTAATAA
194 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCA
* ** *
415085 CAAAATGATTGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGGA-AT
259 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTA-GACTT
* * * * **
415149 TACAATAATTGGTGGG-AAAATGCCTTTCTTGTGAAACCAAAGCATCAATATCGTGTATGTTAAA
323 TACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCT-AA
* * * * *
415213 T-AGAACAAC-ATGTTTATAGTGCCTAATCCTGAACAGAATGGGGATTAGTATGAATATTCTTGT
387 TGAGAA-GACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGT
415276 TTGTCTTATTTAAGAGACAAACTTTG
451 TTGTCTTATTTAAGAGACAAACTTTG
* * * * * * * * * *
415302 ATTCTATCAAAAACGATAGAAAGAAAAGC-CTTCTTGCGATAGCAATGCTTTTAATGTCAGGTAT
1 ATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC-ATCAATGTCATGTAT
* * * * * * * *
415366 CCTAATAAAGGAAATGTGTTTTACGTTCCCAATCCTAAAAACAATGGAGA-CTGTTACGAGAATC
65 CCTATTGAAGGGAATGTGTTTT-TGGTCCCAATCTTGAAAAGAATGGAGATC-GTTACGAGAATC
* * * * * * *
415430 AATGCTTGTGTTATTTAAGAGATGAAATTTTATTTTATAGAAAAT-TGGGCAAAGAAAAGATTTC
128 GATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTC
* * * *
415494 CATGCAAAAGAAAATTATTAATATCATTTATCCTAATGAGAAGAATGTGCTTATAGTACCTAATC
193 CATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATC
* * * ** *
415559 ACAAAATGAATGAAGATCATTACTAGAATCCTTGTTAGTCTCAATTGAGGCGCGAACTTAGACCT
258 ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTT
** * * * ** *
415624 TACAAAAATTTATGGGAAAAAAGCCTTTCCTGCAAAACCAAAATGTCAGTATCGCGTATCCTAAT
323 TACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAAT
* **
415689 GAGAAGACCATGGATATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATG-GCTATTCATGTT
388 GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAG-TATTCATGTT
415753 TGTCTTATTTAAGAGACAAACTTTG
452 TGTCTTATTTAAGAGACAAACTTTG
* * *
415778 ATTCCATCAAAAACGGTGAAAAGAAATGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATC
1 ATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
* * *
415843 CTATTGAAGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAATGTAGATTGTTACGAGAATTGA
66 CTATTGAAGGGAATGTGTTTTTGGT-CCCAATCTTGAAAAGAATGGAGATCGTTACGAGAATCGA
*
415908 TGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAA-GGTAAAGAAAAGATTTCCA
130 TGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCA
* * * *
415972 TGCAAAAGAAAATCGTCAATATCATTTCTCCTAATGA-G-GAATATGCTTATAGTGCCTAATAAC
195 TGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCAC
* * * * * *
416035 AAAATGATTGAAGATCATTTCTAGAATCCATGTTAGTCTTATTTGAGGCAGGAACTTTGACTTTA
260 AAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTA
* *
416100 CAAAAATTAGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCTTAATGA
325 CAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGA
* * *
416165 GAAGACTATGTTTATTGTGCCTAATCCTGAAAAAAAGGGGGATTAGTATG-GCTATTCATGTTTG
390 GAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAG-TATTCATGTTTG
416229 TCTTATTTAAGAGACAAACTTTG
454 TCTTATTTAAGAGACAAACTTTG
* * *
416252 ATTCCATCAAAAATGGTGGAAGGAAAAGCCTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
1 ATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
* * * * * * *
416317 ATATTGAAGGGAATGTGTTTTTAGTACCTAATCCTAAAAACAATGGAGAGT-ATTACGAGAATCG
66 CTATTGAAGGGAATGTGTTTTTGGT-CCCAATCTTGAAAAGAATGGAGA-TCGTTACGAGAATCG
* *
416381 ATACTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAA-GGCAAAGAAAAAATTTCC
129 ATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCC
*
416445 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAAAATGTGCTTATAGTGCCTAATCA
194 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCA
* * * * *
416510 CAAAATGAATGACGATCATTACTAGAATCCATGTTTGTTTCATTTAAGGCATGAAGTTATACTTT
259 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTT
* * * * *
416575 ACAAAAATTGGCGGGTAAAATGCCTTTCTTGCGAAAACAAAGCATCAATATCGTGTATCCTAAAT
324 ACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCT-AAT
* * * * * *
416640 -AGAACAAC-ATGTTTATGGTTCCTAAACTTGAAAAGAATAGGGATTAGTATGAGTATTCAGGTT
388 GAGAA-GACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTT
* * *
416703 TGTTTTATTTAAGAGGCAAACCTTG
452 TGTCTTATTTAAGAGACAAACTTTG
* * ** * *
416728 ATTCCATCAAAAATGGTGGAAAGAAAAGCCTTTCTTGCGATGCCAAAGCATCAATATCCTGTATC
1 ATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
* * * * * * * *
416793 ATATTGAAGGGAATGTGTTTTTAGTACCTAATCCTAAAAACAATGGAG-GCTGCTACGAGAATCG
66 CTATTGAAGGGAATGTGTTTTTGGT-CCCAATCTTGAAAAGAATGGAGATC-GTTACGAGAATCG
* *
416857 ATGC-TGTCTTATTTAAGGGATGAACATTGATTTTATGGAAAAT-AGGGCAAAGAAAAAATTTCC
129 ATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCC
* ** * * *
416920 ATGCAAATGAAAATTGTCAATATCATTTATCCTAATGAGAAAAATATGCTTATAGTGCCTAATCA
194 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCA
* * * *
416985 CAAAATGAATGAAGATCATTACTAGAATCCATTTTTGTTTCATTTGAGGCATGAAGTTATACTTT
259 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTT
** * * * *
417050 ACAAAAATTGGCAGGTAAAATGCCTTTCTTGCGAAACCAAAACATTAATGTCGCATATCCTAATG
324 ACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATG
* * * * *
417115 AGAAGACTATATTTATGGTGCCTAATCCTAAAAAGATTGGGGATTAGTTTGACTATTCATGTTTG
389 AGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTG
*
417180 TCTTATTTAGGAGACAAACTTTG
454 TCTTATTTAAGAGACAAACTTTG
* * *
417203 ATTCCATAAAAAATGGTAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
1 ATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
*
417268 CTATTGATGGGAATGTGTTTTTGGT
66 CTATTGAAGGGAATGTGTTTTTGGT
417293 TGGAAGGGTT
Statistics
Matches: 9512, Mismatches: 1308, Indels: 344
0.85 0.12 0.03
Matches are distributed among these distances:
464 284 0.03
465 237 0.02
466 37 0.00
467 298 0.03
468 137 0.01
469 188 0.02
470 213 0.02
471 143 0.02
472 9 0.00
473 481 0.05
474 2015 0.21
475 1300 0.14
476 3181 0.33
477 652 0.07
478 336 0.04
479 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.31
Consensus pattern (476 bp):
ATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
CTATTGAAGGGAATGTGTTTTTGGTCCCAATCTTGAAAAGAATGGAGATCGTTACGAGAATCGAT
GCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCAT
GCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACA
AAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTAC
AAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAG
AAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTC
TTATTTAAGAGACAAACTTTG
Found at i:409342 original size:950 final size:952
Alignment explanation
Indices: 405826--417293 Score: 14484
Period size: 950 Copynumber: 12.1 Consensus size: 952
405816 TTGTCATCAA
* * *
405826 ATTCCATAAAAAACGGTGGAAAGTATAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
1 ATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
* * *
405891 CTATTGATGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATAATGAGAATCAA
66 CTATTGATGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCAA
*
405956 TGCTTGTCTTATTTGAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCA
131 TGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCA
* * *
406021 AGCAAAA-AAAATCGTCAATATCATTTATCCTAATGAGGAGAATGTGCATAAAGTGCCTAATCAC
196 AGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCAC
* * * * *
406085 AAAATGAATAAAAATCATTACTATAATCCATGTTTGTCTCATTTGACGCACAAACTTAAACTTTA
261 AAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCA-GAACTTAAACTTTA
* * * *
406150 CAAAAATTGGTGGG-AAAATGCCTTTCTTGTGAAACCAGAACATCAATATTGTGTATCCTAATGA
325 CAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGA
* * * *
406214 AAAGAACATGTTTATGGTGCCTAATCCTTAAAAGAATGGGGATTAGTATGTGTATTCTTGTTTGT
390 GAAGAACATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGT
* * *
406279 CTTATTTAAGAGACAAACATTGATTCTATGAAAAACGGTAGAAAGAAAAG-CTTTCCTTGCGACA
455 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCCTTT-CTTGCGACA
* * *
406343 CCAAACCATCAATGTCATGTATCCTATTGAA-GAGAATGTGTTTTTGGTACCAAATCTTTG-AAA
519 CCAAAGCATCAATGTCATGTATCCTAATGAAGGA-AATGTGTTTTTGGTACCCAATC-TTGAAAA
* * * * *
406406 GAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAGGGGTTGAACTTTTATTTTATGGAA
582 CAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAA
* * * * *
406471 AATAAGGCAAAGAAAGGATTTTCATGTAAAAGAAAATCATCAATATCATTTATCCTAGTGA-G-G
647 AATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAG
* * *
406534 AATGTGCTTATAGTGCCTAATTAGAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCCCA
712 AATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCA
* *
406599 TTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCAAAACCAAAA
777 TTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGAGAAAAATGCCTTTCTTGCGAAACCAAAA
** * *
406664 CATCAATATCATGTATCCTAAAT-AGAACAAC-ATGTTTATGGTGCCTAATCCTGAAAAGAATGG
842 CATCAATATCGCGTATCCT-AATGAGAA-GACTATATTTATGGTGCCTAATCCTGAAAAGAATGG
* * *
406727 GGATTAGTATGAGTACTCATGTTTGTCTTATTTAAGAGACAAACTTTG
905 GGATTAGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
* * *
406775 ATTCAATCAAAAACGGTGGAAAGAAAAGCCTTTCTTGTGACACCAAAGCATCAATGTCATGTATC
1 ATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
* * ** * * *
406840 CTATTGATGCGAATGCGTTTTTGGTAT-GTAATCCTGAAACA-AATGTAGA-TCGTTATGAGAAT
66 CTATTGATGGGAATGTGTTTTTGGT-TCCCAATCTTGAAA-AGAATGGAGACT-GTTACGAGAAT
*
406902 CGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTT
128 CAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTT
* * *
406967 CCAAGCAAAAG-AAATCACCAATATCAGTTATCCTAATGAGGAAAATGTGCTTATAGTGCCTAAT
193 CCAAGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAAT
** * * *
407031 CACAAAATGAATGAAGATCATTTTTAGAATCCATGTTAGTCTCATTTGAGGCACAAACTTAAAAT
258 CACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCA-GAACTTAAACT
* * *
407096 TTACAAAAATTAGTGGGAAAAATGCCTTTCTTGAGAAACCAAAACATCAATATCGCATATCCTAA
322 TTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAA
* * * * * * * *
407161 CGAGAAG-ACTATGTTTATGGTGCCTAATCTTGAAAAAAATGGGGAATAGAATGAGTATGCAAGC
387 TGAGAAGAAC-ATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGT
* * * * * *
407225 TTGCCTTATTTAAGAGACAAACTTTAACTATGTCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCG
451 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCCTTTCTTGCG
* * * * ** * *
407290 ACACCAAAGCATCAATGTCATGTATCCTATTGATGGGAATGTG-TTTTGGCATGCAACCCTG-AA
516 ACACCAAAGCATCAATGTCATGTATCCTAATGAAGGAAATGTGTTTTTGGTACCCAATCTTGAAA
* * * *
407353 ACGAATGTAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGGTGAACTTCGATTTTATGG
581 AC-AATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGG
* * * * *
407418 AAAATAAGGCAAAGAAACGATTTCCTTTCAAAAGAAAATCATCAATATCATTTCTCCTAATGA-G
645 AAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGG
* *
407482 -GAATGTGCTTATAATGCCTAATCACAAAATGAATGAAGATCATTATTAGAATCCATGTTTGTCT
710 AGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCT
* * * *
407546 TATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTT-TTCGTGAAACCT
775 CATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGAGAAAAATGCCTTTCTT-GCGAAACCA
* * * * * * * *
407610 AAACATGAATAGCGCGTTTCCTAAAGAGAAGATTGTATTTATCGTGCCTAATCCTGAAAAGACT-
839 AAACATCAATATCGCGTATCCTAATGAGAAGACTATATTTATGGTGCCTAATCCTGAAAAGAATG
* * *
407674 ---AGTACG--TG--TATTCATGTTTGTC-T-TTAAAGAGAGAAACTTTG
904 GGGATTA-GTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
* * * * * ** *
407715 ATTCTATCAAAAACAGAGAAAAGAAAAGCTTTTCTTGCGATACCAAAGCATCAATGTTGTGTTTC
1 ATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
* * * * * *
407780 CTACTGAAGGGACAT-TGTTTTTAGCTCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCA
66 CTATTGATGGGA-ATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCA
* **
407844 ATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTTTGGAAAAT-AGGGCAAAGAAAAGATTTTG
130 ATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCC
* * * * *
407908 ATA-CAAAAGAAAATCACCAAAATCTTTTATCTTAATGAGGGGAATGTGCTTATAGTGCCTAATC
195 A-AGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATC
* * * * *
407972 ACAAAATGAATGAAGATCATTCCTAGGATCCATGTTTGTCTTATTTGATGCACGAACTTAAAATT
259 ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCA-GAACTTAAACTT
* * ***
408037 TACAAAAATTAGTAGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATAATGTATCCTAAT
323 TACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAAT
* * * * *
408102 GAGAAGCACATGTTTATGGTGCCTAATCCTGAAAAGAACGAGGACTAGTATGTGTATTCATGTTT
388 GAGAAGAACATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTT
* * * * *
408167 GTC-T-TTAAAGAGAGAAACTTTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGTGAC
453 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCCTTTCTTGCGAC
* * * *
408230 ACCAAAGCATCAATGTCTTGTATCCTATTGAA-AAGAATGTGTTTTTGGTACCCAATCTTGGAAA
518 ACCAAAGCATCAATGTCATGTATCCTAATGAAGGA-AATGTGTTTTTGGTACCCAATCTTGAAAA
* * * * * **
408294 GAATGGAGACTGTTATGAGCATCGTTGCTTGTCTTATTTAAGGGATGAACTTTTATTTTATACAA
582 CAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAA
* *
408359 AATAGGGCAAAGAAAAGATTTCGATGCAAAA-AAAATCATCAATATCATTTATCCTAGTGAGGAG
647 AATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAG
* * ** * * *
408423 AATGTGCTTATAGTGCCTAATAAAAAAAATGAATGGCGACCATTACAAGAATCCATCTTTGTCTC
712 AATGTGCTTATAGTGCCTAAT-CACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTC
* *
408488 TTTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGAGAAAAATGCCATTCTTGCGAAACCAAA
776 ATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGAGAAAAATGCCTTTCTTGCGAAACCAAA
* * *
408553 ACATCAATATCGCATATCCTAAAGAGAAGACTATATTTATGGTGCCTAATCCAGAAAAGAATGGG
841 ACATCAATATCGCGTATCCTAATGAGAAGACTATATTTATGGTGCCTAATCCTGAAAAGAATGGG
408618 GATTAGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
906 GATTAGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
* *
408665 ATTCCATCAAAAACGGTGGAAAGAATAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATC
1 ATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
* * * * * *
408730 CTACTGATGGGAATTTGTTTTTGGTTCCGAATATTGAAAAGAACGGAGACTGTTACGAGAATCGA
66 CTATTGATGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCAA
* *
408795 TGCTTGTCTTATTTAAGGGATGAACTTTGA-TTTATAGAAAATAAGGGCAAAGAAAAGATTTTCA
131 TGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCA
* * * *
408859 AGCAAAA-AAATTCATCAATATCATATATCCTAATGAGGAAAATGGGCTTATAGTGCCTAATCAC
196 AGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCAC
* *
408923 AAAAAGAGTGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGACGTGCA-AACTTAAACTTT
261 AAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA-G-GCAGAACTTAAACTTT
* * ** *
408987 GCAAAAATTGGTGGGAAAAATGCGTTTCTTGATAAACCAAAACATCAATATCGTGTATCCTAATG
324 ACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATG
*
409052 AAAAGAACATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTG
389 AGAAGAACATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTG
* * *
409117 CCTTATTTAACG-GACAAACTTTGATTCTATCAAAAATGGTGGAAAG-AAAGCCTTTCTTGCAAC
454 TCTTATTTAA-GAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCCTTTCTTGCGAC
* * * * ** * * *
409180 CCCACAGCTTCAACGTCATGTATCCTAATGGCGGAAATGTGTTTTAGGTTCCCAATCTTAAAAAC
518 ACCAAAGCATCAATGTCATGTATCCTAATGAAGGAAATGTGTTTTTGGTACCCAATCTTGAAAAC
* * * * * *
409245 AATGGAGACTGTTACAAGAAACGATGCTTGTCTTATTTAAGAGATAAAATTTGATTTTATAGAAA
583 AATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAA
*
409310 ATAGGGCAAAG-AAAGATTTCCATGCAAAA-AAAAACATCAATATCATTTATCCTAATGAGGAGA
648 ATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA
* * * *
409373 ATGTGGTTATAGTGCCGAATTACAAAATG-A--AAGATCATTACTAGAATCCATGTTTGTTTCAT
713 ATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCAT
* * * * * * *
409435 TTGAGGAATGAAGTTAGACTTCACAAAAATTGG-CAGCTATAATGCCTTTCTTGCAAAACCAAAA
778 TTGAGGCATGAACTTAGACTTTACAAAAATTGGTGAG-AAAAATGCCTTTCTTGCGAAACCAAAA
* * *
409499 CATCAATATCACGTATCCTAATGAAAAGACTATATTTATGATGCCTAATCCTGAAAAGAATGGGG
842 CATCAATATCGCGTATCCTAATGAGAAGACTATATTTATGGTGCCTAATCCTGAAAAGAATGGGG
*
409564 ATTAGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAGCTTTG
907 ATTAGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
* *
409610 ATTCCATAAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATTAATGTCATGTATC
1 ATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
* * * *
409675 CTATTGATTGGAATGTGTTTTTGGTTCTCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGA
66 CTATTGATGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCAA
* * * *
409740 TGCTTGTCTTATATAAGGGATGAACTTTGATTTTATGGAAAATATGAGCAAAGAAAATATTTCCA
131 TGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCA
* * *
409805 AGCAAAA-AAAATCATCAATATCATTTATCATAATAACGAGAATGTGCTTATAGTGCCTAATCAC
196 AGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCAC
** * * *
409869 AAAATGAATGAAGATCATTTTTAGAATCCATGTTAGTCTCATTTGAGGCACAAACTTAAAATTTA
261 AAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCA-GAACTTAAACTTTA
* * * *
409934 CAAAAATTAGTGGAAAAAATGCCTTTCTTGCGAAACCAAAATATCAATATCGCGTATCCTTATGA
325 CAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGA
* *
409999 GAAG-ACTATGTTTATGGTGCCTAATCCTAAAAAGAAGGGGGATTAGTATGAGTATTCATGTTTG
390 GAAGAAC-ATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTG
* *
410063 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTGTTGCGACA
454 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCCTTTCTTGCGACA
* * *
410128 CCAAAGCATCAATGTCTTGTATCCTATTGAAGG-GATAGTGTTTTTGGCT-CCCAATCTTGAAAA
519 CCAAAGCATCAATGTCATGTATCCTAATGAAGGAAAT-GTGTTTTTGG-TACCCAATCTTGAAAA
* *
410191 GAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAA
582 CAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAA
* * * *
410256 AATAAGGCAAAGAAAAGATTTCCATTCAAAAGAAAATCATCAATATCATTTCTCCTAAT-AAG-G
647 AATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAG
* *
410319 AATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTATCA
712 AATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCA
** * * * * *
410384 TTTGAGGCACAAACTTAGACTTTACAATAATTGGT-AGGGAAAATGCATTTCTTGTGAAATCAAA
777 TTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGA-GAAAAATGCCTTTCTTGCGAAACCAAA
* * * *
410448 GCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGCGCCTAATCCTGAAAAGAATGGG
841 ACATCAATATCGCGTATCCTAATGAGAAGACTATATTTATGGTGCCTAATCCTGAAAAGAATGGG
* * * *
410513 GATTAGTATGAGTACTCATGTTTGTCTTATTTAAGAGAAAAACTTTG
906 GATTAGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
* * * * *
410560 ATTCTATCAAAAATGGTGGAAAGAAAAGCCTTTCTTGCGACACCTAAGCATCAATGTCATGCATC
1 ATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
* * * * * * ** * *
410625 CTAATGAAGGAAATGTGTTTTAGGCTCCCAATCCT-ATAAACTATGGAGAGTATTACGAGAATCA
66 CTATTGATGGGAATGTGTTTTTGGTTCCCAATCTTGA-AAAGAATGGAGACTGTTACGAGAATCA
* ** * *
410689 ATGCTTGTCTTATTCAAGGGATGGGCTTTGATTTTGTGAAAAAT-AGGGCAAAGAAAAGATTTCC
130 ATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCC
* * * *
410753 ATGCAAAAGAAAATCATCAATATCATTTATCTTAATGAGGAGAATGTGCTTATCGTGCCTAGTCA
195 AAGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCA
* * * * *
410818 CAAAATGAATGAAGATCATGACTAGAATCCACGTTTGTCTTATTCGAGGCATGAACTTAGACTTT
260 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCA-GAACTTAAACTTT
* * * * *
410883 ACAAAAATTAGTGGGAAAAATGCTTTTCTTAC-AAATCCAAAATATCAATATCGCATATCCTAAT
324 ACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAA-CCAAAACATCAATATCGCGTATCCTAAT
* * * * *
410947 GAGAAG-ACTAAGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTTTGACTATTCATATT
388 GAGAAGAAC-ATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTT
* * * * *
411011 TGTCTTATCTAAGAGACAAACTTTGATTCCATCAAAAACGATGGAAAGAAAAGCTTTTCTTGCAA
452 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCCTTTCTTGCGA
* * * * * * * *
411076 CACCAAAGCATCAATGTCAAGCATCCTATTG-AGTAGAATGTTTTTTTGGTACCTAATATTGGAA
517 CACCAAAGCATCAATGTCATGTATCCTAATGAAGGA-AATGTGTTTTTGGTACCCAATCTTGAAA
* * *
411140 AGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTTATTTTATGGA
581 ACAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGA
* * * * * * *
411205 AAATAAGGCAAAGAAAAGATTTCCATGCAAATGAAAATCATTAATACCATTCATCCTAGTGACGA
646 AAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGA
* * *
411270 GAATGTGCTTATAGTACCTAATCACAAAATGATTGACGATCATTACTAGAATCCATGTTTGTCTC
711 GAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTC
* * * *
411335 ATTTGAGGCATGAACTTAGACTTTACAAAAAGTGGTTG-GAAAAATACCTCTCTCGCGAAACCAA
776 ATTTGAGGCATGAACTTAGACTTTACAAAAATTGG-TGAGAAAAATGCCTTTCTTGCGAAACCAA
** * * *
411399 AACATCTGTATCGCGTATCCTAAAGAAAAGACTATATTTATGGTGCCTAATCTTGAAAAGAATGG
840 AACATCAATATCGCGTATCCTAATGAGAAGACTATATTTATGGTGCCTAATCCTGAAAAGAATGG
* * * * *
411464 GGATTAGTATGGCTATTCGTGTTTGTCTTATTTAATAGGCAAACTTTG
905 GGATTAGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
** * * *
411512 A-TCCATCAAAAATAGTGGAAAGAAATGCTTTTCTTGCGACTCCAAAGCATCAATGTCATGCATC
1 ATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
* * * * * * **
411576 CTATTAAAAGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGATTGTAGATTGTTACGAGAATTG
66 CTATT-GATGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCA
* * **
411641 ATGCTTATCTTATTTAAGGGATGAGCTAGGATTTTATGGAAAATAAGGG-AAAGAAAAGATTTCC
130 ATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCC
* * * **
411705 ATGGAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTACCTAGCCA
195 AAGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCA
* * * *
411770 GAAAATGAATGAAGATCATTACTAGAATCCGTATTTGTCTCATTTGAGGCATGCACTTAAACTTT
260 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCA-GAACTTAAACTTT
* ** **
411835 ACAAAAATTGGTGGGAAAAAGGCCTTTCTTGCGAAACCAAAGGATCAATATCATGTATCCTAAAT
324 ACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCT-AAT
* * *
411900 -AGAACAACATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTACTCATGTTT
388 GAGAAGAACATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTT
*
411964 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCCTTTCTTGCGAC
453 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCCTTTCTTGCGAC
* * * * * * *
412029 ACCAAAGCTTCAATGTCATATATGCTAATGAAGGAAATGTGTTTTAGGTTCCCAATCCTAAAAAC
518 ACCAAAGCATCAATGTCATGTATCCTAATGAAGGAAATGTGTTTTTGGTACCCAATCTTGAAAAC
* * * * * * * *
412094 AATTGAGACTATGACAAGAATCGATGCTTATCTTATTTAAGGGTTGAAATTAGATTTTATGGAAA
583 AATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAA
*
412159 ATAGGGCACAA-AAAAGATTTCCATGCAAAAGAAAATCATTAATATCATTTATCCTAATGAGGAG
648 ATAGGGCA-AAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAG
* * *
412223 AATATGCTTATAATGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTTTCA
712 AATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCA
* * * * *
412288 TTTGAGGCGTGAAGTTAGACTTTACAAAAATTGGCGGGTAAAATGCCTTTCTTGCGAAACCAAAA
777 TTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGAGAAAAATGCCTTTCTTGCGAAACCAAAA
** * * * *
412353 CATCAATATCATGCATCCTTATGAGAAGACAATATTTATGGTGCCTAATCCTAAAAAGAATGGGG
842 CATCAATATCGCGTATCCTAATGAGAAGACTATATTTATGGTGCCTAATCCTGAAAAGAATGGGG
*
412418 ATTAGTTTGACTATTCATGTTTGCCTTATTTAAGAGACAAACTTTG
907 ATTAGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
* * ** * *
412464 ATTCCAACAAAAACGATCAAAATAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATC
1 ATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
** *
412529 CTATTGATGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGGAATGAGAATCAA
66 CTATTGATGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCAA
* * *
412594 TGCTTGTCTTTTTTAGGGGATGAACTTTGATTTTATGGAAAGTAAGGGCAAAGAAAAGATTTCCA
131 TGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCA
* * *
412659 CGCAAAAAGAAAATCGTCAATATCATTAATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCA
196 AGC-AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCA
* * * * * ** *
412724 CAAAGTAAATAAAGATCATTACTAGAATCTATGTTAGTCTCATTTGTCGCAGGAACTTAGACTTT
260 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCA-GAACTTAAACTTT
* * * * *
412789 ACAAAAATTGGAGGGGAAAATGCCTTTGTTGCAAAACTAAAACATCAATATCGCGTATCCTAATG
324 ACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATG
** * * *
412854 AGAAG-ACTATGTTTATGGTGCCTAATCCTGAAAAGAATACGTATTAGTTTGATTATTCATGTTT
389 AGAAGAAC-ATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTT
*
412918 GTCTTATTTAAGAGACAAACTTTGA---T-TCAAAAACGGTGGAAAGAAAAGCCTTTCTTGTGAC
453 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCCTTTCTTGCGAC
* * * *
412979 ACCAAAGCTTCAATGTCATGTATCCTAACGAAGGAAATGTG-TTTTGGGATCCCAATCAT-AAAA
518 ACCAAAGCATCAATGTCATGTATCCTAATGAAGGAAATGTGTTTTTGGTA-CCCAATCTTGAAAA
* * * * *
413042 CTATGGAGACTATT------A-C-ATGCTTGCCTTATTTAAGTGATGAACTTTGATTTTATAGAA
582 CAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAA
* *
413099 AATAAGGGCAAAGAAAAGATTTCCATGCAAAAAAAAATCATTAATATCATTTATCCTAATGAGGA
647 AAT-AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGA
* *
413164 GAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCGTGTTAGTCTC
711 GAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTC
* * *
413229 ATTTGAGGCATGAACTTAGACTTTACAAAAATTAGTGGGAAAAATGCCTTTCTTGCGAATCCAAA
776 ATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGAGAAAAATGCCTTTCTTGCGAAACCAAA
* * *
413294 ACATCAATATCGCGTATCCTAATGAGAAGACTATGTTTATAGTGCCTAATCCTGAAAAAAAATGG
841 ACATCAATATCGCGTATCCTAATGAGAAGACTATATTTATGGTGCCTAATCCTG-AAAAGAATGG
* * *
413359 GGATTAGTTTGGCTATTCGTGTTTGCCTTATTTAAGAGACAAACTTTG
905 GGATTAGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
* *
413407 ATTCCATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATC
1 ATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
** * * * * * *
413472 CTATTGAAAGGAATGGGTTTTTGGTACCCAATCTTGAAAAGAAAGTAGATTGTTACGAGAATCGA
66 CTATTGATGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCAA
413537 TGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAA-GGCAAAGAAAAGATTTCCA
131 TGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCA
* * * * * *
413601 TGCAAAAGAAAATCATCAATATCATTTCTCGTAATG-TG-GAATGTCCTTGTAGTGCCTAATCAC
196 AGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCAC
* * * * * * *
413664 AAAATGAATGAAGGTGATTGCTTGAATCCATGATTGTCTTATTTGAGGCACGAACTTAAACTTTG
261 AAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCA-GAACTTAAACTTTA
* * * * **
413729 CAAAAATTGGTGGGAAAGATGCCTGTCTTGCGAAAGCAAAGCATCAATATCATGTATCCTAAAT-
325 CAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCT-AATG
* * **
413793 AGAACAACATGCTTATGGTGCCTAATCCTGAAAAGAATAAGGATTAGTATGAGTATTCATGTTTG
389 AGAAGAACATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTG
* * * *
413858 TCTTATGTAAGAGACTAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGCCTTTCTTGCTACA
454 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCCTTTCTTGCGACA
** ** * * * * *
413923 CCAAAGTTTCAATGTCATGTATCCTAATGGTGGAAATGTGTTTTAGGTTCACAATCCTAAAAACA
519 CCAAAGCATCAATGTCATGTATCCTAATGAAGGAAATGTGTTTTTGGTACCCAATCTTGAAAACA
* * * * * *
413988 ATGGAGACTGTTACGAGAATTGATGCTTGGCTTATTCAAGAGATAAAAC-TTGATTTTATAGAAA
584 ATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGAT-GAACTTTGATTTTATGGAAA
* *
414052 ATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAGTGAGGAAA
648 ATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA
* * * *
414117 ATGTGTTTATAGTGTCTAATCACAAAATGAATGAAGATCATTACTGGAATCCATGTTTGTTTCAT
713 ATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCAT
* * * *
414182 TTGAGGCATGAAGTTAGACTTTACAAAAACTGG-CAGGTAAAATGCCTTTCTTGCGAAACCAAAA
778 TTGAGGCATGAACTTAGACTTTACAAAAATTGGTGA-GAAAAATGCCTTTCTTGCGAAACCAAAA
* * * *
414246 CATCAATATTGCATATCCTAATGACAAGACTATATTTATAGTGCCTAATCCTGAAAAGAATGGGG
842 CATCAATATCGCGTATCCTAATGAGAAGACTATATTTATGGTGCCTAATCCTGAAAAGAATGGGG
* * * * *
414311 ATTAGTTTGGCTTTTCATGTTTCTTTTATTTAAGAGACAAACTTTA
907 ATTAGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
* ** * * *
414357 ATTCCATAAAAAATAGTGGAAAGAAAAGCTATTCTTGGGACACCAAATCATCAATGTCATGTATC
1 ATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
* * * * * *
414422 CATTTTAATGGGATTGTGTTTTTGGTTCCCAATTTTGAAAAGAATGAAGACTGTTATGAGAATCA
66 C-TATTGATGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCA
** * * * *
414487 ATGCTTGTCTTATTTAAGATATAAAATTTGATTTTTTAGAAAAT-AGGGCAAAGAAAAGATTTCC
130 ATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCC
* * * *
414551 ATA-CAAAAGAAAATCTTCATTATCATTTATCCTAATGAGGAGAATGTGCTTATAGGGCCTAATT
195 A-AGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATC
* * * *
414615 ACAAAATGAATGAAGATCGTTACTAGAATCCATGTTTGTTTCATTTGAGGCACGAAGTTAGACTT
259 ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCA-GAACTTAAACTT
* * * * *
414680 TACAAAAATTGGAGGGTAAAATGCCTTTCTTGCGAAACAAAAACATCAATATCACATATCCTAAT
323 TACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAAT
*
414745 GAGAAG-ACTATGTTTATGGTGCCTAATCCT-AAAACGAATGGGGATTAGT-TCG-GCTATTCGT
388 GAGAAGAAC-ATGTTTATGGTGCCTAATCCTGAAAA-GAATGGGGATTAGTAT-GAG-TATTCAT
* * * *
414806 GTTTGCCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAAAAAAAGCTTTTCTT
449 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGG-AAAGAAAAGCCTTTCTT
* *
414871 GCGACACCAAAGCATCAATGTCATGTATCCTAGTGAAGGGAATGTGTTTTTGGTACCCAATCTTG
513 GCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGAAATGTGTTTTTGGTACCCAATCTTG
* * * * * *
414936 AAAAGAATGTAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGAGATAAAATTTGATTTTAT
578 AAAACAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAT
* *
415001 AGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAA-AAAA--ATC---ATCATTTCTCCTAATGA
643 GGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA
* *
415060 -G-GAATGTGCTTATAGTGCCTAATAACAAAATGATTGAAGATCATTACTAGAATCCATGTTTGT
708 GGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGT
** * * * *
415123 CTCATTTGAGGCACAAACTTAGGA-ATTACAATAATTGGTG-GGAAAATGCCTTTCTTGTGAAAC
773 CTCATTTGAGGCATGAACTTA-GACTTTACAAAAATTGGTGAGAAAAATGCCTTTCTTGCGAAAC
* * ** * * * *
415186 CAAAGCATCAATATCGTGTATGTTAAAT-AGAACAAC-ATGTTTATAGTGCCTAATCCTGAACAG
837 CAAAACATCAATATCGCGTATCCT-AATGAGAA-GACTATATTTATGGTGCCTAATCCTGAAAAG
* * *
415249 AATGGGGATTAGTATGAATATTCTTGTTTGTCTTATTTAAGAGACAAACTTTG
900 AATGGGGATTAGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
* * * * * * * * * *
415302 ATTCTATCAAAAACGATAGAAAGAAAAGC-CTTCTTGCGATAGCAATGCTTTTAATGTCAGGTAT
1 ATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGC-ATCAATGTCATGTAT
* * * * ** * * *
415366 CCTAATAAAGGAAATGTGTTTTACGTTCCCAATCCTAAAAACAATGGAGACTGTTACGAGAATCA
65 CCTATTGATGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCA
* * * * * *
415431 ATGCTTGTGTTATTTAAGAGATGAAATTTTATTTTATAGAAAAT-TGGGCAAAGAAAAGATTTCC
130 ATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCC
* * * * *
415495 ATGCAAAAGAAAATTATTAATATCATTTATCCTAATGAGAAGAATGTGCTTATAGTACCTAATCA
195 AAGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCA
* * * * * *
415560 CAAAATGAATGAAGATCATTACTAGAATCCTTGTTAGTCTCAATTGAGGCGCGAACTTAGACCTT
260 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGC-AGAACTTAAACTTT
** * * * ** *
415625 ACAAAAATTTATGGGAAAAAAGCCTTTCCTGCAAAACCAAAATGTCAGTATCGCGTATCCTAATG
324 ACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATG
* **
415690 AGAAGACCATGGATATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATG-GCTATTCATGTTT
389 AGAAGAACATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAG-TATTCATGTTT
* * * * *
415754 GTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGAAAAGAAATGCTTTTCTTGTGAC
453 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCCTTTCTTGCGAC
* * *
415819 ACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTACCCAATCTTGAAAAG
518 ACCAAAGCATCAATGTCATGTATCCTAATGAAGGAAATGTGTTTTTGGTACCCAATCTTGAAAAC
* * *
415884 AATGTAGATTGTTACGAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAA
583 AATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAA
* * * *
415949 ATAAGGTAAAGAAAAGATTTCCATGCAAAAGAAAATCGTCAATATCATTTCTCCTAATGA-G-GA
648 ATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA
* * * * * *
416012 ATATGCTTATAGTGCCTAATAACAAAATGATTGAAGATCATTTCTAGAATCCATGTTAGTCTTAT
713 ATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCAT
* * * *
416077 TTGAGGCAGGAACTTTGACTTTACAAAAATTAGTGGGAAAAATGCCTTTCTTGCGAAACCAAAAC
778 TTGAGGCATGAACTTAGACTTTACAAAAATTGGTGAGAAAAATGCCTTTCTTGCGAAACCAAAAC
* * * * *
416142 ATCAATATCGCGTATCTTAATGAGAAGACTATGTTTATTGTGCCTAATCCTGAAAAAAAGGGGGA
843 ATCAATATCGCGTATCCTAATGAGAAGACTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGA
* *
416207 TTAGTATGGCTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
908 TTAGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
* * *
416252 ATTCCATCAAAAATGGTGGAAGGAAAAGCCTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
1 ATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
* * * * * * * * * * *
416317 ATATTGAAGGGAATGTGTTTTTAGTACCTAATCCTAAAAACAATGGAGAGTATTACGAGAATCGA
66 CTATTGATGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCAA
* *
416382 TACTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAA-GGCAAAGAAAAAATTTCCA
131 TGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCA
* *
416446 TGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAAAATGTGCTTATAGTGCCTAATCAC
196 AGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCAC
* * * * *
416511 AAAATGAATGACGATCATTACTAGAATCCATGTTTGTTTCATTTAAGGCATGAAGTTATACTTTA
261 AAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCA-GAACTTAAACTTTA
* * * * *
416576 CAAAAATTGGCGGGTAAAATGCCTTTCTTGCGAAAACAAAGCATCAATATCGTGTATCCTAAAT-
325 CAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCT-AATG
* * * * * *
416640 AGAACAACATGTTTATGGTTCCTAAACTTGAAAAGAATAGGGATTAGTATGAGTATTCAGGTTTG
389 AGAAGAACATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTG
* * * * * **
416705 TTTTATTTAAGAGGCAAACCTTGATTCCATCAAAAATGGTGGAAAGAAAAGCCTTTCTTGCGATG
454 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCCTTTCTTGCGACA
* * * * * * * * *
416770 CCAAAGCATCAATATCCTGTATCATATTGAAGGGAATGTGTTTTTAGTACCTAATCCTAAAAACA
519 CCAAAGCATCAATGTCATGTATCCTAATGAAGGAAATGTGTTTTTGGTACCCAATCTTGAAAACA
* * *
416835 ATGGAGGCTGCTACGAGAATCGATGC-TGTCTTATTTAAGGGATGAACATTGATTTTATGGAAAA
584 ATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAA
* * ** * *
416899 TAGGGCAAAGAAAAAATTTCCATGCAAATGAAAATTGTCAATATCATTTATCCTAATGAGAAAAA
649 TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
* * *
416964 TATGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATTTTTGTTTCATT
714 TGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATT
* * * *
417029 TGAGGCATGAAGTTATACTTTACAAAAATTGG-CAGGTAAAATGCCTTTCTTGCGAAACCAAAAC
779 TGAGGCATGAACTTAGACTTTACAAAAATTGGTGA-GAAAAATGCCTTTCTTGCGAAACCAAAAC
* * * * *
417093 ATTAATGTCGCATATCCTAATGAGAAGACTATATTTATGGTGCCTAATCCTAAAAAGATTGGGGA
843 ATCAATATCGCGTATCCTAATGAGAAGACTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGA
*
417158 TTAGTTTGACTATTCATGTTTGTCTTATTTAGGAGACAAACTTTG
908 TTAGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
* * *
417203 ATTCCATAAAAAATGGTAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
1 ATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
417268 CTATTGATGGGAATGTGTTTTTGGTT
66 CTATTGATGGGAATGTGTTTTTGGTT
417294 GGAAGGGTTT
Statistics
Matches: 9119, Mismatches: 1252, Indels: 294
0.86 0.12 0.03
Matches are distributed among these distances:
938 114 0.01
939 321 0.04
940 407 0.04
941 218 0.02
942 259 0.03
943 461 0.05
944 409 0.04
945 494 0.05
946 391 0.04
947 162 0.02
948 70 0.01
949 1165 0.13
950 2061 0.23
951 788 0.09
952 1084 0.12
953 321 0.04
954 394 0.04
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.31
Consensus pattern (952 bp):
ATTCCATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
CTATTGATGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCAA
TGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCA
AGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCAC
AAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAGAACTTAAACTTTAC
AAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCTAATGAG
AAGAACATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTC
TTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCCTTTCTTGCGACACC
AAAGCATCAATGTCATGTATCCTAATGAAGGAAATGTGTTTTTGGTACCCAATCTTGAAAACAAT
GGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATA
GGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATG
TGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG
AGGCATGAACTTAGACTTTACAAAAATTGGTGAGAAAAATGCCTTTCTTGCGAAACCAAAACATC
AATATCGCGTATCCTAATGAGAAGACTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATTA
GTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
Found at i:423270 original size:158 final size:156
Alignment explanation
Indices: 422614--425181 Score: 711
Period size: 158 Copynumber: 16.2 Consensus size: 156
422604 GAAAAATGCC
* * * * *
422614 TTTCTTGCAAAACC-AAACAACAATATCATGTATCCAAATAAGAAGAACATGTTTATGGTGCCTA
1 TTTCTTGCGAAACCAAAACATCAATATCATGTATCCTAATAAG-AGAACAAGTTTATGGTTCCTA
** * * *
422678 ATCCTAAAAAGAATGGGGATTAGTA-TGGGTATTCATGTTTGTCTTTTTTAAGAGACAAACTTTG
65 ATCCTAAAAAGAATGGAAATTAGTACT-AGAATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
422742 AATCTATC-AAAAATGGTGAAAAGAAAAGCT
129 AATCTATCAAAAAAT-G-G-AAAGAAAAGCT
* * * * * * * * *** * *
422772 TTTCTTGC-AGCACCAAAGCATCAATGTCGTGTATTCTATTGATGGGAATGTGTTTTTGGTTCCC
1 TTTCTTGCGA-AACCAAAACATCAATATCATGTATCCTAAT-AAGAGAACAAGTTTATGGTTCCT
* * * *** * * * *
422836 AATCTTGAAAAGAATAGAGGCT-GTTACGAGAA-TCGATGCTTGTCTTATTTGAGGGA-AGAACT
64 AATCCTAAAAAGAATGGAAATTAG-TACTAGAATTC-ATGTTTGTCTTATTTAAGAGACA-AACT
* * * * *
422898 TTGATTTTATGAAAAATAAGGGCAAAGAAAAGAT
126 TTGAATCTAT-CAAAA-AATGG-AAAGAAAAGCT
* * * * * * * * *** * * *
422932 TTCCATGCGAAA-GAAAATCGTCAATATCATTTTTTCTAATGAGGAGAATGTGCTTATAGTCCCT
1 TTTCTTGCGAAACCAAAA-CATCAATATCATGTATCCTAAT-AAGAGAACAAGTTTATGGTTCCT
* *** * * * * * * *
422996 AATCAC-AAAATGAAT-GAAAAGCGTTACTAGAATCCATGTTTTTCTCATTTGACACACGAAC-T
64 AATC-CTAAAAAGAATGGAAATTAG-TACTAGAATTCATGTTTGTCTTATTTAAGAGACAAACTT
* * * ** *
423058 T-AAACTTTACAAAAATTGGGGAGAAAAATGCC
127 TGAATCTAT-CAAAAAATGGAAAG-AAAA-GCT
* *
423090 TTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATAAGAAGAACAAGTTTATCGTTCCTA
1 TTTCTTGCGAAACCAAAACATCAATATCATGTATCCTAATAAG-AGAACAAGTTTATGGTTCCTA
* *
423155 ATCCTAAAAAGAATGGAAATTAGTA-TAGTATTCACGTTTGTCTTATTTAAGAGACAAACTTTGA
65 ATCCTAAAAAGAATGGAAATTAGTACTAGAATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
423219 ATCTATCAAAAACCATGGAAAGAAAAGCT
130 ATCTATCAAAAA--ATGGAAAGAAAAGCT
* ** * * * * *** * *
423248 TTTCTTGCGACACCAAGGCATCAATGTCATGTATCCTATTGATGGGAATGTGTTTTTGGTTCCCA
1 TTTCTTGCGAAACCAAAACATCAATATCATGTATCCTAAT-AAGAGAACAAGTTTATGGTTCCTA
* * * * * * * * **
423313 ATCTTGAAAAGAATGGAGACT-GTTACGAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTG
65 ATCCTAAAAAGAATGGAAATTAG-TACTAGAATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
* * * ** *
423377 ATTTTATGGAAAATAA-GGCAAATCAAAGAT
129 AATCTAT-CAAAA-AATGG-AAAGAAAAGCT
* * ** * * * *
423407 TTCCATGC-AAAAGAAAATCATCAATATCATTTATCC-AA-AAGAG-GCGAATGTGCTTATAGTG
1 TTTCTTGCGAAACCAAAA-CATCAATATCATGTATCCTAATAAGAGAAC-AA-GT--TTATGGTT
* * * * * *
423468 CCTAATCATAAAATGAAT-GAAGATCATTACTAGAATCCATGTTTGTCTCATTT--GATGCACAA
61 CCTAATCCTAAAAAGAATGGAA-ATTAGTACTAGAATTCATGTTTGTCTTATTTAAGA-G-ACAA
* * * ** *
423530 AC-TT-AAACTTTACAAAAATTGGGGAGAAAAATGCC
123 ACTTTGAATCTAT-CAAAAAATGGAAAG-AAAA-GCT
* *
423565 TTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATAAGAAGAACAAGTTTAGGGTTCCTA
1 TTTCTTGCGAAACCAAAACATCAATATCATGTATCCTAATAAG-AGAACAAGTTTATGGTTCCTA
* ** *
423630 ATCCTAAAAAGAAGGGGGATTAGTA-TAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
65 ATCCTAAAAAGAATGGAAATTAGTACTAGAATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* *
423694 ATTTATCAAAAACGGTGGAAAGAAAAGCT
130 ATCTATCAAAAA--ATGGAAAGAAAAGCT
* * * * * * * * ** *
423723 TTTTTTGCGACACCAAAGCATCAATGTCAAGTATCCTATTGATGGGAACGTGTTCT-TGGTTCCC
1 TTTCTTGCGAAACCAAAACATCAATATCATGTATCCTAAT-AAGAGAACAAGTT-TATGGTTCCT
* * * * * * * **
423787 AATCTTGAAAAGAATGGAGACT-GTTACGAGAA-TCGATGCTTGTCTTATTTAAGGGATGAACTT
64 AATCCTAAAAAGAATGGAAATTAG-TACTAGAATTC-ATGTTTGTCTTATTTAAGAGACAAACTT
* * * * *
423850 TGATTTTATGGAAAATAA-GGCAAATAAAAGAT
127 TGAATCTAT-CAAAA-AATGG-AAAGAAAAGCT
* * ** * * * *** * * *
423882 TTCCATGC-AACAGAAAAACATTAATATCATTTTATCCTAATGAGGAGAATGTGCTTATAGTGCC
1 TTTCTTGCGAA-ACCAAAACATCAATATCA-TGTATCCTAAT-AAGAGAACAAGTTTATGGTTCC
** * * * * * *
423946 TAATCAC-AAAATTAAT-GAAGATCATTACTAGAATCCATGTTTGTCTCATTT--GACACCTGAA
63 TAATC-CTAAAAAGAATGGAA-ATTAGTACTAGAATTCATGTTTGTCTTATTTAAGAGA-C-AAA
** * * *** *
424007 CTTAAAATTTA-CAAAAATTGGTGGGAAAAATGCC
124 CTTTGAATCTATCAAAAAATGGAAAG-AAAA-GCT
* * * * *
424041 TTTCTCT-CGAAACCAAAACATAAATATCATGTATTCTAATGAGAAGAACATGTTTATGGTGCCT
1 TTTCT-TGCGAAACCAAAACATCAATATCATGTATCCTAATAAG-AGAACAAGTTTATGGTTCCT
* ** * *
424105 AATCCTGAAAAGAATGGGGATTAGTA-TGAGTACTCATGTTTGTCTTATTTAAGAGACAAACTTT
64 AATCCTAAAAAGAATGGAAATTAGTACT-AGAATTCATGTTTGTCTTATTTAAGAGACAAACTTT
* *
424169 GATTCTATCAAAAATGGTGGAAAGAAAAG-T
128 GAATCTATCAAAAA--ATGGAAAGAAAAGCT
* * * * * * * * *** * * *
424199 TTTCCTACGACACCAAAGCATCAATGTCATGTATCATATTGAAGGGAAGGTGTTTTTGGTACCCA
1 TTTCTTGCGAAACCAAAACATCAATATCATGTATCCTAAT-AAGAGAACAAGTTTATGGTTCCTA
* * ** * * * * **
424264 ATCTTGAAAAGAATATATATT-GTTACGAGAA-TCGATGCTTGCCTTATTTAAGAGATGAACTTT
65 ATCCTAAAAAGAATGGAAATTAG-TACTAGAATTC-ATGTTTGTCTTATTTAAGAGACAAACTTT
* * * *
424327 GATTATAGGCAAAATAA-GGCAAAGAAAAGAT
128 GAATCTA-TCAAAA-AATGG-AAAGAAAAGCT
* * ** * * *** * * *
424358 TTCCATGC-AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCT
1 TTTCTTGCGAAACCAAAA-CATCAATATCATGTATCCTAAT-AAGAGAACAAGTTTATGGTTCCT
* * * * ** * * *
424422 -ATACAC-AAAATGAAT-GACGATCATTACTAGAACCCATGTTTGTCTCATTT--GACACCTGAA
64 AAT-C-CTAAAAAGAATGGA-AATTAGTACTAGAATTCATGTTTGTCTTATTTAAGAGA-C-AAA
* * * * *
424482 C-TT-AAACTTTACAAAAATTGGTGGAAA-AAATGCC
124 CTTTGAATCTAT-CAAAAA---ATGGAAAGAAAAGCT
* * * * *
424516 TTTCTTGCGAAACC-AAACAACAATATTATGTATCCTAATGAGAAGAACATGTTTATGGTGCCTA
1 TTTCTTGCGAAACCAAAACATCAATATCATGTATCCTAATAAG-AGAACAAGTTTATGGTTCCTA
* ** * *
424580 ATCCTGAAAAGAATGGGGATTAGTA-TGAGTACTCATGTTTGTCTTATTTAAGAGACAAACTTTG
65 ATCCTAAAAAGAATGGAAATTAGTACT-AGAATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
* *
424644 ATTCTATCAAAAATGGTGGAAAGAAAAG-T
129 AATCTATCAAAAA--ATGGAAAGAAAAGCT
* * * * * * * * *** * * *
424673 TTTCCTACGACACCAAAGCATCAATGTCATGTATCATATTGAAGGGAAGGTGTTTTTGGTACCCA
1 TTTCTTGCGAAACCAAAACATCAATATCATGTATCCTAAT-AAGAGAACAAGTTTATGGTTCCTA
* * ** * * * * **
424738 ATCTTGAAAAGAATATATATT-GTTACGAGAA-TCGATGCTTGCCTTATTTAAGAGATGAACTTT
65 ATCCTAAAAAGAATGGAAATTAG-TACTAGAATTC-ATGTTTGTCTTATTTAAGAGACAAACTTT
* * * *
424801 GATTATAGGCAAAATAA-GGCAAAGAAAAGAT
128 GAATCTA-TCAAAA-AATGG-AAAGAAAAGCT
* * ** * * *** * * *
424832 TTCCATGC-AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCT
1 TTTCTTGCGAAACCAAAA-CATCAATATCATGTATCCTAAT-AAGAGAACAAGTTTATGGTTCCT
* * * * ** * * *
424896 -ATACAC-AAAATGAAT-GACGATCATTACTAGAACCCATGTTTGTCTCATTT--GACACCTGAA
64 AAT-C-CTAAAAAGAATGGA-AATTAGTACTAGAATTCATGTTTGTCTTATTTAAGAGA-C-AAA
* * * * *
424956 C-TT-AAACTTTACAAAAATTGGTGGAAA-AAATGCC
124 CTTTGAATCTAT-CAAAAA---ATGGAAAGAAAAGCT
* * * * *
424990 TTTCTTGCGAAACC-AAACAACAATATTATGTATCCTAATGAGAAGAACATGTTTATGGTGCCTA
1 TTTCTTGCGAAACCAAAACATCAATATCATGTATCCTAATAAG-AGAACAAGTTTATGGTTCCTA
* ** * *
425054 ATCCTGAAAAGAATGGGGATTAGTA-TGAGTACTCATGTTTGTCTTATTTAAGAGACAAACTTT-
65 ATCCTAAAAAGAATGGAAATTAGTACT-AGAATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
*
425117 AATTCTATCAAAAATGGTGGAAAGAAAAG-T
129 AA-TCTATCAAAAA--ATGGAAAGAAAAGCT
* ** * * *
425147 TTTCCTATGATACCAAAGCATCAATGTCATGTATC
1 TTTCTTGCGAAACCAAAACATCAATATCATGTATC
425182 ATATTGAAGT
Statistics
Matches: 1720, Mismatches: 536, Indels: 308
0.67 0.21 0.12
Matches are distributed among these distances:
156 15 0.01
157 295 0.17
158 672 0.39
159 521 0.30
160 197 0.11
161 17 0.01
162 3 0.00
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.31
Consensus pattern (156 bp):
TTTCTTGCGAAACCAAAACATCAATATCATGTATCCTAATAAGAGAACAAGTTTATGGTTCCTAA
TCCTAAAAAGAATGGAAATTAGTACTAGAATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAA
TCTATCAAAAAATGGAAAGAAAAGCT
Found at i:424212 original size:951 final size:950
Alignment explanation
Indices: 422312--428045 Score: 7968
Period size: 951 Copynumber: 6.1 Consensus size: 950
422302 CAATTCTGTG
* *
422312 AAGCATCAACGTCATGTATCCTATTGATGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATG
1 AAGCATCAATGTCATGTATCCTATTGATGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATG
* * * * *
422377 GAGACTGTTACGAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGAAAAATAA
66 GAGACTGTTACGAGAATCGATGCTTGCCTTATTTAAGGGATGAACTTTGATTATAGGCAAAATAA
*
422442 GGCAAATAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
131 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
* * *
422507 GCTTATAGTGCCTAATCACAAAATGAATGACGATCATTACTAGAACCCATGTTTATCTCATTTGA
196 GCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA
* * *
422572 CAGCTGAACTTAAACATTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCAAAACC-AAACAACA
261 CA-C-GAACTTAAACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCA
* *
422636 ATATCATGTATCCAAATAAGAAGAACATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAG
324 ATATCATGTATCCTAATGAGAAGAACATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAG
* * * * *
422701 TATGGGTATTCATGTTTGTCTTTTTTAAGAGACAAACTTTGAATCTATCAAAAATGGTGAAAAGA
389 TATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAATTTATCAAAAACGGTGGAAAGA
* *
422766 AAAGCTTTTCTTGC-AGCACCAAAGCATCAATGTCGTGTATTCTATTGATGGGAATGTGTTTTTG
454 AAAGCTTTTCTTGCGA-CACCAAAGCATCAATGTCATGTATCCTATTGATGGGAATGTGTTTTTG
* * *
422830 GTTCCCAATCTTGAAAAGAATAGAGGCTGTTACGAGAATCGATGCTTGTCTTATTTGAGGGAAGA
518 GTTCCCAATCTTGAAAAGAATAGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
* * *
422895 ACTTTGATTTTATGAAAAATAAGGGCAAAGAAAAGATTTCCATGCGAAAGAAAATCGTCAATATC
583 ACTTTGATTTTATGGAAAATAA-GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* * * * * *
422960 ATTTTTTCTAATGAGGAGAATGTGCTTATAGTCCCTAATCACAAAATGAATGAAAAGCGTTACTA
647 ATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
*
423025 GAATCCATGTTTTTCTCATTTGACACACGAACTTAAACTTTACAAAAATTGG-GGAGAAAAATGC
712 GAATCCATGTTTGTCTCATTTGACACACGAACTTAAACTTTACAAAAATTGGTGG-GAAAAATGC
* * * *
423089 CTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATAAGAAGAACAAGTTTATCGTTCCT
776 CTTTCTTGCGAAACCAAAACATCAATATCATGTATCCTAATGAGAAGAACAAGTTTATGGTGCCT
** * *
423154 AATCCTAAAAAGAATGGAAATTAGTAT-AGTATTCACGTTTGTCTTATTTAAGAGACAAACTTTG
841 AATCCTAAAAAGAATGGGGATTAGTATGAGTACTCATGTTTGTCTTATTTAAGAGACAAACTTTG
* ** * *
423218 AATCTATCAAAAACCATGGAAAGAAAAGCTTTTCTTGCGACACCA
906 ATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCCTACGACACCA
*
423263 AGGCATCAATGTCATGTATCCTATTGATGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATG
1 AAGCATCAATGTCATGTATCCTATTGATGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATG
* * *
423328 GAGACTGTTACGAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGG-AAAATA
66 GAGACTGTTACGAGAATCGATGCTTGCCTTATTTAAGGGATGAACTTTGATTATA-GGCAAAATA
** * * *
423392 AGGCAAATCAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCAAAAGAGGCGAATG
130 AGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATG
*
423457 TGCTTATAGTGCCTAATCATAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG
195 TGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG
*
423522 ATGCACAAACTTAAACTTTACAAAAATTGG-GGAGAAAAATGCCTTTCTTGCGAAACCAAAACAT
260 A--CACGAACTTAAACTTTACAAAAATTGGTGG-GAAAAATGCCTTTCTTGCGAAACCAAAACAT
* * * * * *
423586 CAATATCGTGTATCCTAATAAGAAGAACAAGTTTAGGGTTCCTAATCCTAAAAAGAAGGGGGATT
322 CAATATCATGTATCCTAATGAGAAGAACATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATT
423651 AGTAT-AGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAATTTATCAAAAACGGTGGAAA
387 AGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAATTTATCAAAAACGGTGGAAA
* * * *
423715 GAAAAGCTTTTTTTGCGACACCAAAGCATCAATGTCAAGTATCCTATTGATGGGAACGTGTTCTT
452 GAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGATGGGAATGTGTTTTT
*
423780 GGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATG
517 GGTTCCCAATCTTGAAAAGAATAGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATG
* * * *
423845 AACTTTGATTTTATGGAAAATAAGGCAAATAAAAGATTTCCATGCAACAGAAAAACATTAATATC
582 AACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
*
423910 ATTTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATTAATGAAGATCATTACT
647 A-TTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACT
*
423975 AGAATCCATGTTTGTCTCATTTGACAC-CTGAACTTAAAATTTACAAAAATTGGTGGGAAAAATG
711 AGAATCCATGTTTGTCTCATTTGACACAC-GAACTTAAACTTTACAAAAATTGGTGGGAAAAATG
* * *
424039 CCTTTCTCT-CGAAACCAAAACATAAATATCATGTATTCTAATGAGAAGAACATGTTTATGGTGC
775 CCTTTCT-TGCGAAACCAAAACATCAATATCATGTATCCTAATGAGAAGAACAAGTTTATGGTGC
*
424103 CTAATCCTGAAAAGAATGGGGATTAGTATGAGTACTCATGTTTGTCTTATTTAAGAGACAAACTT
839 CTAATCCTAAAAAGAATGGGGATTAGTATGAGTACTCATGTTTGTCTTATTTAAGAGACAAACTT
*
424168 TGATTCTATCAAAAATGGTGGAAAGAAAAG-TTTTCCTACGACACCA
904 TGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCCTACGACACCA
* * * * *
424214 AAGCATCAATGTCATGTATCATATTGAAGGGAAGGTGTTTTTGGTACCCAATCTTGAAAAGAATA
1 AAGCATCAATGTCATGTATCCTATTGATGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATG
* * * *
424279 TATATTGTTACGAGAATCGATGCTTGCCTTATTTAAGAGATGAACTTTGATTATAGGCAAAATAA
66 GAGACTGTTACGAGAATCGATGCTTGCCTTATTTAAGGGATGAACTTTGATTATAGGCAAAATAA
424344 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
131 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
* *
424409 GCTTATAGTGCCT-ATACACAAAATGAATGACGATCATTACTAGAACCCATGTTTGTCTCATTTG
196 GCTTATAGTGCCTAAT-CACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG
* *
424473 ACACCTGAACTTAAACTTTACAAAAATTGGTGGAAAAAATGCCTTTCTTGCGAAACC-AAACAAC
260 ACA-C-GAACTTAAACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATC
* *
424537 AATATTATGTATCCTAATGAGAAGAACATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTA
323 AATATCATGTATCCTAATGAGAAGAACATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTA
* *
424602 GTATGAGTACTCATGTTTGTCTTATTTAAGAGACAAACTTTG-ATTCTATCAAAAATGGTGGAAA
388 GTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAATT-TATCAAAAACGGTGGAAA
* * * * *
424666 GAAAAG-TTTTCCTACGACACCAAAGCATCAATGTCATGTATCATATTGAAGGGAAGGTGTTTTT
452 GAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGATGGGAATGTGTTTTT
* * * * * *
424730 GGTACCCAATCTTGAAAAGAATATATATTGTTACGAGAATCGATGCTTGCCTTATTTAAGAGATG
517 GGTTCCCAATCTTGAAAAGAATAGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATG
*
424795 AACTTTGATTATA-GGCAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATAT
582 AACTTTGATTTTATGG-AAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATAT
*
424859 CATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCT-ATACACAAAATGAATGACGATCATTAC
646 CATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAAT-CACAAAATGAATGAAGATCATTAC
* *
424923 TAGAACCCATGTTTGTCTCATTTGACAC-CTGAACTTAAACTTTACAAAAATTGGTGGAAAAAAT
710 TAGAATCCATGTTTGTCTCATTTGACACAC-GAACTTAAACTTTACAAAAATTGGTGGGAAAAAT
* * *
424987 GCCTTTCTTGCGAAACC-AAACAACAATATTATGTATCCTAATGAGAAGAACATGTTTATGGTGC
774 GCCTTTCTTGCGAAACCAAAACATCAATATCATGTATCCTAATGAGAAGAACAAGTTTATGGTGC
*
425051 CTAATCCTGAAAAGAATGGGGATTAGTATGAGTACTCATGTTTGTCTTATTTAAGAGACAAACTT
839 CTAATCCTAAAAAGAATGGGGATTAGTATGAGTACTCATGTTTGTCTTATTTAAGAGACAAACTT
* * * *
425116 TAATTCTATCAAAAATGGTGGAAAGAAAAG-TTTTCCTATGATACCA
904 TGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCCTACGACACCA
* * * * * * * *
425162 AAGCATCAATGTCATGTATCATATTGAAGTGAAGGTGTTTTTGGTACCAAATCTTGAATAGAATA
1 AAGCATCAATGTCATGTATCCTATTGATGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATG
* * * *
425227 TAGATTGTTACAAGAATCGATGCTTGCCTTATTTAAGAGATGAACTTTGATTATAGGCAAAATAA
66 GAGACTGTTACGAGAATCGATGCTTGCCTTATTTAAGGGATGAACTTTGATTATAGGCAAAATAA
* * *
425292 GGCAAAGAAAAGTTTTCCATGCAAAAGAAAGTCATCAATATCATTTCTCCTAATGA-G-GAA--T
131 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
* *
425353 G--T-T--TG-----TCAC-------------AT--TT-GTAGAATCCATGTTTGTCACATTTGA
196 GCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA
* * * * * *
425392 GGTATGAACTTAGACTTTACAATAATTGGTGGGAAATATGCCTTTCTTGTGAAACCAAAACATCA
261 --CACGAACTTAAACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCA
* * * *
425457 ATATCATGTATCCTAGTGAGAAGAACATGTTTATGGTGCCTAATCTTGAATAGAATGGGGATTAG
324 ATATCATGTATCCTAATGAGAAGAACATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAG
*
425522 TATGAGTACTCATGTTTGTCTTATTTAAGAGACAAACTTTG-ATTCTAT-ACAAAACGGTGGAAA
389 TATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAATT-TATCA-AAAACGGTGGAAA
* * * *
425585 GAAAAG-TTTTCCTGCGACACCAAAGCATCAATGTCATGTATCGTATTGAAGGGAAGGTGTTTTT
452 GAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGATGGGAATGTGTTTTT
* * * * * * * *
425649 GGTACCTAATCTTGAATAGAATATAGATTGTTACAAGAATCGATGCTTGCCTTATTTAAGAGATG
517 GGTTCCCAATCTTGAAAAGAATAGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATG
* *
425714 AACTTTGATTATA-GGCAAAATAAGGCAAAGAAAAGTTTTCCATGCAAAAGAAAATCATCAATAT
582 AACTTTGATTTTATGG-AAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATAT
* *
425778 CATTTCTCCTAATGA-G-GAA--TG--T-T--TG-----TCAC-------------AT--TT-GT
646 CATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACT
* *** * * * *
425813 AGAATCCATGTTTGTCACATTTGAGGTATGAACTTAGACTTTACAATAATTGGTGGGAAATATGC
711 AGAATCCATGTTTGTCTCATTTGACACACGAACTTAAACTTTACAAAAATTGGTGGGAAAAATGC
* * *
425878 CTTTCTTGTGAAACCAAAACATCAATATCATGTATCCTAGTGAGAAGAACATGTTTATGGTGCCT
776 CTTTCTTGCGAAACCAAAACATCAATATCATGTATCCTAATGAGAAGAACAAGTTTATGGTGCCT
* * *
425943 AATCTTGAATAGAATGGGGATTAGTATGAGTACTCATGTTTGTCTTATTTAAGAGACAAACTTTG
841 AATCCTAAAAAGAATGGGGATTAGTATGAGTACTCATGTTTGTCTTATTTAAGAGACAAACTTTG
*
426008 ATTCTAT-ACAAAACGGTGGAAAGAAAAG-TTTTCCTGCGACACCA
906 ATTCTATCA-AAAACGGTGGAAAGAAAAGCTTTTCCTACGACACCA
* * * * * *
426052 AAGCATCAATGTCATGTATCGTATTGAAGGGAAGGTGTTTTTGGTACCTAATCTTGAAAAGAATA
1 AAGCATCAATGTCATGTATCCTATTGATGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATG
* * * * * * *
426117 TAGATTGTTACAAGAATCTATGCCTGCCTTATTTAAGGAATGAACTTTGATTATAGGTAAAATAA
66 GAGACTGTTACGAGAATCGATGCTTGCCTTATTTAAGGGATGAACTTTGATTATAGGCAAAATAA
* *
426182 GGCAAAGAAAAGATTTCCGTGCAAAAGAAAATCATCAATATCATTTTTCCTAATGA-G-GAATGT
131 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
*
426245 GCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTTTCTCATTTGA
196 GCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA
* * *
426310 CACGCGAACTTTAACTTTACAAAAATTAGG-GAGAAAAATGCCTTTTTTGCGAAACCAAAACATC
261 CA--CGAACTTAAACTTTACAAAAATT-GGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATC
*
426374 AATATCATGTATCCTAATGAGAAGAACATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTA
323 AATATCATGTATCCTAATGAGAAGAACATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTA
* * * * * *
426439 GTATTAGTATTCAAGTTTGTCTTATTTAAAAGACAAACTTTGAATCTATCCAAAACAGTGGAAAG
388 GTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAATTTATCAAAAACGGTGGAAAG
* * *
426504 AAAAGCTTTTCTTGCGACATCAAAGCATCACTATCATGTATCCTATTGATGGGAATGTGTTTTTG
453 AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGATGGGAATGTGTTTTTG
* * *
426569 GTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATACTTGTCTTATTTAAGTGATGA
518 GTTCCCAATCTTGAAAAGAATAGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
* * * *
426634 ACCTTGATTTTGTGGAAAATAAGGCAAATAAAAGATTTCCATTCAAAAGAAAATCATCAATATCA
583 ACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCA
* * * *
426699 TTTATCCTAAAGAGGAGAATGTGCTTATAATGCCTAATCGCAAAATGAATGATGATCATTACTAG
648 TTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAG
* * *
426764 AATCCACGTTTTTCTCATTTGACACACGAACTTAAACTTTACAAAAATT--AGGGAGAAAATGCC
713 AATCCATGTTTGTCTCATTTGACACACGAACTTAAACTTTACAAAAATTGGTGGGA-AAAATGCC
* *
426827 TTTCTTGCAAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGAACAAGTTTATGGTGCCTA
777 TTTCTTGCGAAACCAAAACATCAATATCATGTATCCTAATGAGAAGAACAAGTTTATGGTGCCTA
* *
426892 ATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTCGA
842 ATCCTAAAAAGAATGGGGATTAGTATGAGTACTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* * * *
426957 TTTTACCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCA
907 TTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCCTACGACACCA
* *
427001 AGGCATCAATGTCATGTATCCTATTGATGGAAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATG
1 AAGCATCAATGTCATGTATCCTATTGATGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATG
* *
427066 GAGACTATTACGAGAATCGATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTATGG-AAAATA
66 GAGACTGTTACGAGAATCGATGCTTGCCTTATTTAAGGGATGAACTTTGATTATA-GGCAAAATA
* * * *
427130 AGGCAAATAAAAGATTTCCTTCCAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATG
130 AGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATG
* * *
427195 TGCTTATAGTGCCTAATTACAAAATAAATGCAGATCATTACTAGAATCCATGTTTGTCTCATTTG
195 TGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG
* * *
427260 ACAAATGAACTTAAACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTGGCGAAACGAAAACATC
260 AC--ACGAACTTAAACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATC
427325 AATATCATGTATCCTAATGAGAAGAACATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTA
323 AATATCATGTATCCTAATGAGAAGAACATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTA
* * * * *
427390 GTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTCGATTTTACCAAAACCCGTGGAAAG
388 GTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAATTTATCAAAAACGGTGGAAAG
* *
427455 AAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCATGTATCCTATTGATGGAAATGTGTTTTTG
453 AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGATGGGAATGTGTTTTTG
* * * * *
427520 GTTCCCAATGTTGAAAAGAATGGAGACTATTACGAGAATCAATGCTTGTCTTATTTGAGGGATGA
518 GTTCCCAATCTTGAAAAGAATAGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
* * * * *
427585 ACTTTGATTTTATGGAAAATAAGGCAAAAAAAAGATTTGCTTCCAAAAAAAAATCATCAATATCA
583 ACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCA
* * * * *
427650 TTTATCTTAATGAGGAGAATGTTCTTATAGTGCCTAATTACAAAATAAATGCAGATCATTACTAG
648 TTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAG
*
427715 AATCCATGTTTTTCTCATTTGACACACGAACTTAAACTTTACAAAAATT-G-GGGAGAAAATGCC
713 AATCCATGTTTGTCTCATTTGACACACGAACTTAAACTTTACAAAAATTGGTGGGA-AAAATGCC
* *
427778 TTTCTTGCAAAACCAGAACATCAATATCATGTATCCTAATGAGAAGAACAAGTTTATGGTGCCTA
777 TTTCTTGCGAAACCAAAACATCAATATCATGTATCCTAATGAGAAGAACAAGTTTATGGTGCCTA
* * * *
427843 ATCCTAAAAATAATGAGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGCCAAA-TTTCG
842 ATCCTAAAAAGAATGGGGATTAGTATGAGTACTCATGTTTGTCTTATTTAAGAGACAAACTTT-G
* * *
427907 ATTTTACCAAAAACGGTGGAAAGAAAAGCTTTTCTTGA-GACACCA
906 ATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCCT-ACGACACCA
*
427952 AAGCATCAATGTCATGTATCCTATTGATGGAAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATG
1 AAGCATCAATGTCATGTATCCTATTGATGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATG
*
428017 GAGACTATTACGAGAATCGATGCTTGCCT
66 GAGACTGTTACGAGAATCGATGCTTGCCT
428046 ATAAACTCTA
Statistics
Matches: 4323, Mismatches: 355, Indels: 210
0.88 0.07 0.04
Matches are distributed among these distances:
889 70 0.02
890 325 0.08
892 4 0.00
894 1 0.00
895 1 0.00
897 2 0.00
902 4 0.00
905 3 0.00
906 1 0.00
910 2 0.00
912 1 0.00
913 1 0.00
915 4 0.00
916 1 0.00
917 5 0.00
918 264 0.06
919 508 0.12
920 4 0.00
921 5 0.00
923 2 0.00
925 1 0.00
926 1 0.00
928 2 0.00
933 3 0.00
934 3 0.00
935 1 0.00
939 2 0.00
941 1 0.00
942 1 0.00
944 2 0.00
946 5 0.00
947 5 0.00
948 484 0.11
949 358 0.08
950 288 0.07
951 1819 0.42
952 136 0.03
953 3 0.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (950 bp):
AAGCATCAATGTCATGTATCCTATTGATGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATG
GAGACTGTTACGAGAATCGATGCTTGCCTTATTTAAGGGATGAACTTTGATTATAGGCAAAATAA
GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
GCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA
CACGAACTTAAACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAAT
ATCATGTATCCTAATGAGAAGAACATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTA
TGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAATTTATCAAAAACGGTGGAAAGAAA
AGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGATGGGAATGTGTTTTTGGTT
CCCAATCTTGAAAAGAATAGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACT
TTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTT
ATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
CCATGTTTGTCTCATTTGACACACGAACTTAAACTTTACAAAAATTGGTGGGAAAAATGCCTTTC
TTGCGAAACCAAAACATCAATATCATGTATCCTAATGAGAAGAACAAGTTTATGGTGCCTAATCC
TAAAAAGAATGGGGATTAGTATGAGTACTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
ATCAAAAACGGTGGAAAGAAAAGCTTTTCCTACGACACCA
Found at i:424674 original size:474 final size:476
Alignment explanation
Indices: 422312--425350 Score: 4556
Period size: 474 Copynumber: 6.4 Consensus size: 476
422302 CAATTCTGTG
* * * * *
422312 AAGCATCAACGTCATGTATCCTATTGATGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATG
1 AAGCATCAATGTCATGTATCATATTGATGGGAAGGTGTTTTTGGTTCCCAATCTTGAAAAGAATA
* * *
422377 GAGACTGTTACGAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGAAAAATAA
66 GAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAGGCAAAATAA
*
422442 GGCAAATAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
131 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
* *
422507 GCTTATAGTGCCTAATCACAAAATGAATGACGATCATTACTAGAACCCATGTTTATCTCATTTGA
196 GCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAACCCATGTTTGTCTCATTTGA
* * * *
422572 CAGCTGAACTTAAACATTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCAAAACC-AAACAACA
261 CACCTGAACTTAAACTTTACAAAAATTGGTGGAAAAAATGCCTTTCTTGCGAAACCAAAACAACA
*
422636 ATATCATGTATCCAAATAAGAAGAACATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAG
326 ATATCATGTATCCTAATAAGAAGAACATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAG
* * * * *
422701 TATGGGTATTCATGTTTGTCTTTTTTAAGAGACAAACTTTGAATCTATCAAAAATGGTGAAAAGA
391 TATGAGTACTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGA
* *
422766 AAAGCTTTTCTTGC-AGCACCA
456 AAAGCTTTTCCTACGA-CACCA
* *
422787 AAGCATCAATGTCGTGTATTC-TATTGATGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAAT
1 AAGCATCAATGTCATGTA-TCATATTGATGGGAAGGTGTTTTTGGTTCCCAATCTTGAAAAGAAT
* * * * *
422851 AGAGGCTGTTACGAGAATCGATGCTTGTCTTATTTGAGGGAAGAACTTTGATTTTATGAAAAATA
65 AGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAGGCAAAATA
* * * *
422916 AGGGCAAAGAAAAGATTTCCATGCGAAAGAAAATCGTCAATATCATTTTTTCTAATGAGGAGAAT
130 A-GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
* * * * * *
422981 GTGCTTATAGTCCCTAATCACAAAATGAATGAAAAGCGTTACTAGAATCCATGTTTTTCTCATTT
194 GTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAACCCATGTTTGTCTCATTT
423046 GACACAC-GAACTTAAACTTTACAAAAATTGG-GGAGAAAAATGCCTTTCTTGCGAAACCAAAAC
259 GACAC-CTGAACTTAAACTTTACAAAAATTGGTGGA-AAAAATGCCTTTCTTGCGAAACCAAAAC
* * * * * **
423109 ATCAATATCGTGTATCCTAATAAGAAGAACAAGTTTATCGTTCCTAATCCTAAAAAGAATGGAAA
322 AACAATATCATGTATCCTAATAAGAAGAACATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGA
* * * ***
423174 TTAGTAT-AGTATTCACGTTTGTCTTATTTAAGAGACAAACTTTGAATCTATCAAAAACCATGGA
387 TTAGTATGAGTACTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGA
* *
423238 AAGAAAAGCTTTTCTTGCGACACCA
452 AAGAAAAGCTTTTCCTACGACACCA
* * * *
423263 AGGCATCAATGTCATGTATCCTATTGATGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATG
1 AAGCATCAATGTCATGTATCATATTGATGGGAAGGTGTTTTTGGTTCCCAATCTTGAAAAGAATA
*
423328 GAGACTGTTACGAGAATTGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGG-AAAATA
66 GAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA-GGCAAAATA
** * * *
423392 AGGCAAATCAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCAAAAGAGGCGAATG
130 AGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATG
* *
423457 TGCTTATAGTGCCTAATCATAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG
195 TGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAACCCATGTTTGTCTCATTTG
*
423522 ATGCA-C-AAACTTAAACTTTACAAAAATTGG-GGAGAAAAATGCCTTTCTTGCGAAACCAAAAC
260 A--CACCTGAACTTAAACTTTACAAAAATTGGTGGA-AAAAATGCCTTTCTTGCGAAACCAAAAC
* * * * * *
423584 ATCAATATCGTGTATCCTAATAAGAAGAACAAGTTTAGGGTTCCTAATCCTAAAAAGAAGGGGGA
322 AACAATATCATGTATCCTAATAAGAAGAACATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGA
* *
423649 TTAGTAT-AGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAATT-TATCAAAAACGGTGG
387 TTAGTATGAGTACTCATGTTTGTCTTATTTAAGAGACAAACTTTG-ATTCTATCAAAAATGGTGG
** *
423712 AAAGAAAAGCTTTTTTTGCGACACCA
451 AAAGAAAAGCTTTTCCTACGACACCA
* * * * *
423738 AAGCATCAATGTCAAGTATCCTATTGATGGGAACGTGTTCTTGGTTCCCAATCTTGAAAAGAATG
1 AAGCATCAATGTCATGTATCATATTGATGGGAAGGTGTTTTTGGTTCCCAATCTTGAAAAGAATA
423803 GAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGG-AAAATA
66 GAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA-GGCAAAATA
* * * *
423867 AGGCAAATAAAAGATTTCCATGCAACAGAAAAACATTAATATCATTTTATCCTAATGAGGAGAAT
130 AGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCA-TTTATCCTAATGAGGAGAAT
* *
423932 GTGCTTATAGTGCCTAATCACAAAATTAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT
194 GTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAACCCATGTTTGTCTCATTT
* *
423997 GACACCTGAACTTAAAATTTACAAAAATTGGTGGGAAAAATGCCTTTCTCT-CGAAACCAAAACA
259 GACACCTGAACTTAAACTTTACAAAAATTGGTGGAAAAAATGCCTTTCT-TGCGAAACCAAAACA
* * *
424061 TA-AATATCATGTATTCTAATGAGAAGAACATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGA
323 -ACAATATCATGTATCCTAATAAGAAGAACATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGA
424125 TTAGTATGAGTACTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGA
387 TTAGTATGAGTACTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGA
424190 AAGAAAAG-TTTTCCTACGACACCA
452 AAGAAAAGCTTTTCCTACGACACCA
* *
424214 AAGCATCAATGTCATGTATCATATTGAAGGGAAGGTGTTTTTGGTACCCAATCTTGAAAAGAATA
1 AAGCATCAATGTCATGTATCATATTGATGGGAAGGTGTTTTTGGTTCCCAATCTTGAAAAGAATA
* * * * * *
424279 TATATTGTTACGAGAATCGATGCTTGCCTTATTTAAGAGATGAACTTTGATTATAGGCAAAATAA
66 GAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAGGCAAAATAA
424344 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
131 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
*
424409 GCTTATAGTGCCT-ATACACAAAATGAATGACGATCATTACTAGAACCCATGTTTGTCTCATTTG
196 GCTTATAGTGCCTAAT-CACAAAATGAATGAAGATCATTACTAGAACCCATGTTTGTCTCATTTG
424473 ACACCTGAACTTAAACTTTACAAAAATTGGTGGAAAAAATGCCTTTCTTGCGAAACC-AAACAAC
260 ACACCTGAACTTAAACTTTACAAAAATTGGTGGAAAAAATGCCTTTCTTGCGAAACCAAAACAAC
* * *
424537 AATATTATGTATCCTAATGAGAAGAACATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTA
325 AATATCATGTATCCTAATAAGAAGAACATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTA
424602 GTATGAGTACTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAG
390 GTATGAGTACTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAG
424667 AAAAG-TTTTCCTACGACACCA
455 AAAAGCTTTTCCTACGACACCA
* *
424688 AAGCATCAATGTCATGTATCATATTGAAGGGAAGGTGTTTTTGGTACCCAATCTTGAAAAGAATA
1 AAGCATCAATGTCATGTATCATATTGATGGGAAGGTGTTTTTGGTTCCCAATCTTGAAAAGAATA
* * * * * *
424753 TATATTGTTACGAGAATCGATGCTTGCCTTATTTAAGAGATGAACTTTGATTATAGGCAAAATAA
66 GAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAGGCAAAATAA
424818 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
131 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
*
424883 GCTTATAGTGCCT-ATACACAAAATGAATGACGATCATTACTAGAACCCATGTTTGTCTCATTTG
196 GCTTATAGTGCCTAAT-CACAAAATGAATGAAGATCATTACTAGAACCCATGTTTGTCTCATTTG
424947 ACACCTGAACTTAAACTTTACAAAAATTGGTGGAAAAAATGCCTTTCTTGCGAAACC-AAACAAC
260 ACACCTGAACTTAAACTTTACAAAAATTGGTGGAAAAAATGCCTTTCTTGCGAAACCAAAACAAC
* * *
425011 AATATTATGTATCCTAATGAGAAGAACATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTA
325 AATATCATGTATCCTAATAAGAAGAACATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTA
*
425076 GTATGAGTACTCATGTTTGTCTTATTTAAGAGACAAACTTTAATTCTATCAAAAATGGTGGAAAG
390 GTATGAGTACTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAG
* *
425141 AAAAG-TTTTCCTATGATACCA
455 AAAAGCTTTTCCTACGACACCA
* * * * *
425162 AAGCATCAATGTCATGTATCATATTGAAGTGAAGGTGTTTTTGGTACCAAATCTTGAATAGAATA
1 AAGCATCAATGTCATGTATCATATTGATGGGAAGGTGTTTTTGGTTCCCAATCTTGAAAAGAATA
* * * * * *
425227 TAGATTGTTACAAGAATCGATGCTTGCCTTATTTAAGAGATGAACTTTGATTATAGGCAAAATAA
66 GAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAGGCAAAATAA
* * *
425292 GGCAAAGAAAAGTTTTCCATGCAAAAGAAAGTCATCAATATCATTTCTCCTAATGAGGA
131 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGA
425351 ATGTTTGTCA
Statistics
Matches: 2402, Mismatches: 139, Indels: 47
0.93 0.05 0.02
Matches are distributed among these distances:
473 1 0.00
474 811 0.34
475 735 0.31
476 720 0.30
477 135 0.06
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.31
Consensus pattern (476 bp):
AAGCATCAATGTCATGTATCATATTGATGGGAAGGTGTTTTTGGTTCCCAATCTTGAAAAGAATA
GAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAGGCAAAATAA
GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGT
GCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAACCCATGTTTGTCTCATTTGA
CACCTGAACTTAAACTTTACAAAAATTGGTGGAAAAAATGCCTTTCTTGCGAAACCAAAACAACA
ATATCATGTATCCTAATAAGAAGAACATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAG
TATGAGTACTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGA
AAAGCTTTTCCTACGACACCA
Found at i:427521 original size:476 final size:474
Alignment explanation
Indices: 425812--428045 Score: 3406
Period size: 475 Copynumber: 4.7 Consensus size: 474
425802 GTCACATTTG
* * *** * * * *
425812 TAGAATCCATGTTTGTCACATTTGAGGTATGAACTTAGACTTTACAATAATTGGTGGGAAATATG
1 TAGAATCCATGTTTTTCTCATTTGACACACGAACTTAAACTTTACAAAAATTGG-GGGAAAAATG
* *
425877 CCTTTCTTGTGAAACCAAAACATCAATATCATGTATCCTAGTGAGAAGAACATGTTTATGGTGCC
65 CCTTTCTTGCGAAACCAAAACATCAATATCATGTATCCTAATGAGAAGAACATGTTTATGGTGCC
* * * * *
425942 TAATCTTGAATAGAATGGGGATTAGTATGAGTACTCATGTTTGTCTTATTTAAGAGACAAACTTT
130 TAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTC
*
426007 GATTCTATA-CAAAACGGTGGAAAGAAAAG-TTTTCCTGCGACACCAAAGCATCAATGTCATGTA
195 GATT-T-TACCAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTA
* * * * * * ** * * *
426070 TCGTATTGAAGGGAAGGTGTTTTTGGTACCTAATCTTGAAAAGAATATAGATTGTTACAAGAATC
258 TCCTATTGATGGAAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGAATC
* * * * *
426135 TATGCCTGCCTTATTTAAGGAATGAACTTTGATTATA-GGTAAAATAAGGCAAAGAAAAGATTTC
323 GATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTATGG-AAAATAAGGCAAATAAAAGATTTC
* * * *
426199 CGTGCAAAAGAAAATCATCAATATCATTTTTCCTAATGA-G-GAATGTGCTTATAGTGCCTAATC
387 CTTCCAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATC
* *
426262 ACAAAATGAATGAAGATCATTAC
452 ACAAAATAAATGCAGATCATTAC
* * *
426285 TAGAATCCATGTTTTTCTCATTTGACACGCGAACTTTAACTTTACAAAAATTAGGGAGAAAAATG
1 TAGAATCCATGTTTTTCTCATTTGACACACGAACTTAAACTTTACAAAAATT-GGGGGAAAAATG
*
426350 CCTTTTTTGCGAAACCAAAACATCAATATCATGTATCCTAATGAGAAGAACATGTTTATGGTGCC
65 CCTTTCTTGCGAAACCAAAACATCAATATCATGTATCCTAATGAGAAGAACATGTTTATGGTGCC
* * * * *
426415 TAATCCTGAAAAGAATGGGGATTAGTATTAGTATTCAAGTTTGTCTTATTTAAAAGACAAACTTT
130 TAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTC
* * * * * *
426480 GAATCTATCCAAAACAGTGGAAAGAAAAGCTTTTCTTGCGACATCAAAGCATCACTATCATGTAT
195 GATTTTA-CCAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAT
* *
426545 CCTATTGATGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCG
259 CCTATTGATGGAAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCG
* * * * *
426610 ATACTTGTCTTATTTAAGTGATGAACCTTGATTTTGTGGAAAATAAGGCAAATAAAAGATTTCCA
324 ATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGCAAATAAAAGATTTCC-
* * * *
426675 TT-CAAAAGAAAATCATCAATATCATTTATCCTAAAGAGGAGAATGTGCTTATAATGCCTAATCG
388 TTCCAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCA
*
426739 CAAAATGAATG-ATGATCATTAC
453 CAAAATAAATGCA-GATCATTAC
* *
426761 TAGAATCCACGTTTTTCTCATTTGACACACGAACTTAAACTTTACAAAAATT-AGGGAGAAAATG
1 TAGAATCCATGTTTTTCTCATTTGACACACGAACTTAAACTTTACAAAAATTGGGGGA-AAAATG
* * *
426825 CCTTTCTTGCAAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGAACAAGTTTATGGTGCC
65 CCTTTCTTGCGAAACCAAAACATCAATATCATGTATCCTAATGAGAAGAACATGTTTATGGTGCC
426890 TAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTC
130 TAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTC
*
426955 GATTTTACCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAGGCATCAATGTCATGTAT
195 GATTTTACC-AAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAT
427020 CCTATTGATGGAAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCG
259 CCTATTGATGGAAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCG
427085 ATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGCAAATAAAAGATTTCCT
324 ATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGCAAATAAAAGATTTCCT
*
427150 TCCAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATTAC
389 TCCAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCAC
427215 AAAATAAATGCAGATCATTAC
454 AAAATAAATGCAGATCATTAC
* * *
427236 TAGAATCCATGTTTGTCTCATTTGACAAATGAACTTAAACTTTACAAAAATTGGTGGGAAAAATG
1 TAGAATCCATGTTTTTCTCATTTGACACACGAACTTAAACTTTACAAAAATTGG-GGGAAAAATG
* *
427301 CCTTTCTGGCGAAACGAAAACATCAATATCATGTATCCTAATGAGAAGAACATGTTTATGGTGCC
65 CCTTTCTTGCGAAACCAAAACATCAATATCATGTATCCTAATGAGAAGAACATGTTTATGGTGCC
427366 TAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTC
130 TAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTC
* *
427431 GATTTTACCAAAACCCGTGGAAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCATGTAT
195 GATTTTACCAAAA-CGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAT
* *
427496 CCTATTGATGGAAATGTGTTTTTGGTTCCCAATGTTGAAAAGAATGGAGACTATTACGAGAATCA
259 CCTATTGATGGAAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCG
* * * *
427561 ATGCTTGTCTTATTTGAGGGATGAACTTTGATTTTATGGAAAATAAGGCAAAAAAAAGATTTGCT
324 ATGCTTGCCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGCAAATAAAAGATTTCCT
* * *
427626 TCCAAAAAAAAATCATCAATATCATTTATCTTAATGAGGAGAATGTTCTTATAGTGCCTAATTAC
389 TCCAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCAC
427691 AAAATAAATGCAGATCATTAC
454 AAAATAAATGCAGATCATTAC
427712 TAGAATCCATGTTTTTCTCATTTGACACACGAACTTAAACTTTACAAAAATT-GGGGAGAAAATG
1 TAGAATCCATGTTTTTCTCATTTGACACACGAACTTAAACTTTACAAAAATTGGGGGA-AAAATG
* * *
427776 CCTTTCTTGCAAAACCAGAACATCAATATCATGTATCCTAATGAGAAGAACAAGTTTATGGTGCC
65 CCTTTCTTGCGAAACCAAAACATCAATATCATGTATCCTAATGAGAAGAACATGTTTATGGTGCC
* * * *
427841 TAATCCTAAAAATAATGAGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGCCAAATTTC
130 TAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTC
*
427906 GATTTTACCAAAAACGGTGGAAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCATGTAT
195 GATTTTACC-AAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAT
427971 CCTATTGATGGAAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCG
259 CCTATTGATGGAAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCG
428036 ATGCTTGCCT
324 ATGCTTGCCT
428046 ATAAACTCTA
Statistics
Matches: 1620, Mismatches: 123, Indels: 34
0.91 0.07 0.02
Matches are distributed among these distances:
471 2 0.00
473 193 0.12
474 184 0.11
475 696 0.43
476 541 0.33
477 4 0.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (474 bp):
TAGAATCCATGTTTTTCTCATTTGACACACGAACTTAAACTTTACAAAAATTGGGGGAAAAATGC
CTTTCTTGCGAAACCAAAACATCAATATCATGTATCCTAATGAGAAGAACATGTTTATGGTGCCT
AATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTCG
ATTTTACCAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCC
TATTGATGGAAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCGAT
GCTTGCCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGCAAATAAAAGATTTCCTTC
CAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAA
AATAAATGCAGATCATTAC
Found at i:432690 original size:18 final size:18
Alignment explanation
Indices: 432660--432706 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
432650 ATCTTCTTCT
432660 CTCCTC-CTCCTATCATCC
1 CTCCTCTCT-CTATCATCC
* *
432678 CTCCTCTCTCTATTATCT
1 CTCCTCTCTCTATCATCC
*
432696 CTCCTATCTCT
1 CTCCTCTCTCT
432707 CATCCTATCA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 23 0.92
19 2 0.08
ACGTcount: A:0.11, C:0.47, G:0.00, T:0.43
Consensus pattern (18 bp):
CTCCTCTCTCTATCATCC
Found at i:432703 original size:9 final size:9
Alignment explanation
Indices: 432691--432751 Score: 50
Period size: 9 Copynumber: 6.1 Consensus size: 9
432681 CTCTCTCTAT
432691 TATCTCTCC
1 TATCTCTCC
432700 TATCTCTCATCC
1 TA--TCTC-TCC
432712 TATCATCCCTCC
1 TATC-T--CTCC
*
432724 TATCTCTAC
1 TATCTCTCC
*
432733 TATCACTCC
1 TATCTCTCC
432742 TATCTCTCC
1 TATCTCTCC
432751 T
1 T
432752 CCCTTCATCC
Statistics
Matches: 42, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
9 21 0.50
10 2 0.05
11 6 0.14
12 12 0.29
13 1 0.02
ACGTcount: A:0.16, C:0.43, G:0.00, T:0.41
Consensus pattern (9 bp):
TATCTCTCC
Found at i:432714 original size:42 final size:42
Alignment explanation
Indices: 432667--432772 Score: 160
Period size: 42 Copynumber: 2.5 Consensus size: 42
432657 TCTCTCCTCC
* * *
432667 TCCTATCATCCCTCCTCTCTCTATTATCTCTCCTATCTCTCA
1 TCCTATCATCCCTCCTATCTCTACTATCACTCCTATCTCTCA
*
432709 TCCTATCATCCCTCCTATCTCTACTATCACTCCTATCTCTCC
1 TCCTATCATCCCTCCTATCTCTACTATCACTCCTATCTCTCA
432751 TCCCT-TCATCCCTCCTATCTCT
1 T-CCTATCATCCCTCCTATCTCT
432773 TCTTTCTCTT
Statistics
Matches: 59, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
42 56 0.95
43 3 0.05
ACGTcount: A:0.14, C:0.45, G:0.00, T:0.41
Consensus pattern (42 bp):
TCCTATCATCCCTCCTATCTCTACTATCACTCCTATCTCTCA
Found at i:432723 original size:24 final size:23
Alignment explanation
Indices: 432667--432772 Score: 90
Period size: 24 Copynumber: 5.0 Consensus size: 23
432657 TCTCTCCTCC
*
432667 TCCTATCATCCCTCCTCTCTCTA
1 TCCTATCATCCCTCCTATCTCTA
432690 T--TATC-T--CTCCTATCTCTCA
1 TCCTATCATCCCTCCTATCTCT-A
432709 TCCTATCATCCCTCCTATCTCTA
1 TCCTATCATCCCTCCTATCTCTA
*
432732 --CTATCA---CTCCTATCTCTCC
1 TCCTATCATCCCTCCTATCTCT-A
432751 TCCCT-TCATCCCTCCTATCTCT
1 T-CCTATCATCCCTCCTATCTCT
432773 TCTTTCTCTT
Statistics
Matches: 68, Mismatches: 2, Indels: 25
0.72 0.02 0.26
Matches are distributed among these distances:
18 21 0.31
19 2 0.03
20 1 0.01
21 17 0.25
22 3 0.04
23 2 0.03
24 22 0.32
ACGTcount: A:0.14, C:0.45, G:0.00, T:0.41
Consensus pattern (23 bp):
TCCTATCATCCCTCCTATCTCTA
Done.