Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold408
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 555187
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
File 3 of 3
Found at i:432743 original size:18 final size:18
Alignment explanation
Indices: 432678--432748 Score: 61
Period size: 18 Copynumber: 3.6 Consensus size: 18
432668 CCTATCATCC
* * *
432678 CTCCTCTCTCTATTATCT
1 CTCCTATCTCTACTATCA
432696 CTCCTATCTCTCATCCTATCA
1 CTCCTATCTCT-A--CTATCA
432717 TCCCTCCTATCTCTACTATCA
1 ---CTCCTATCTCTACTATCA
432738 CTCCTATCTCT
1 CTCCTATCTCT
432749 CCTCCCTTCA
Statistics
Matches: 44, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
18 21 0.48
19 1 0.02
21 10 0.23
23 1 0.02
24 11 0.25
ACGTcount: A:0.15, C:0.42, G:0.00, T:0.42
Consensus pattern (18 bp):
CTCCTATCTCTACTATCA
Found at i:436853 original size:474 final size:476
Alignment explanation
Indices: 435860--452751 Score: 19721
Period size: 474 Copynumber: 35.6 Consensus size: 476
435850 CCTAATCAGA
* * * * * *
435860 ATGAGTATTCATGTTGGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAATGGTGGAAAAAA
1 ATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAA
* * * * * * *
435925 AAGCCTTTCTAGTGACACCAAAGCATCAATGTCATGTATCTTATCGAAGGAAATGTGTTTTAGGT
66 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGT
* * * * * * * * *
435990 TTCTAATCCT-AAAAGCAATGAAGACTGTTATGAAAACCGATGTTTGTCTCATTTAAGGGATGAA
131 TCCCAATCTTGAAAAG-AATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAA
* * * ** *
436054 CATTGATTTCATAGAAAAT-AGGGTGAAGAAATGATTTCCATGCAAAAGAAAATCATCAATATCA
195 CTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCA
*
436118 TTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCAC-AAATGAATGAAGACCATTACTAG
260 TTTATCCTAATGAGGAGAATGTGC-TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAG
* * *
436182 AATCCATGTTTGTTTCATTCGAGGCATGAACTTAGACTTTACAAAAATTGGT-CGATAAAATGCC
324 AATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGA-AAAATGCC
** * * * **
436246 TTTCTTATGAAACCAAAACATTAATATCGCGTATCCTAATGAGAAGACTATGTTTATTGTTTCTA
388 TTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTA
436311 ATCCTGAAAAGAATGGGGATTAGT
453 ATCCTGAAAAGAATGGGGATTAGT
* * * *
436335 TTGACTATTTATATTTGTCTTATTTAAGAGACAAACTTTGATTCCATTAAAAACGGTGGAAAGAA
1 ATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAA
* * * * * * * *
436400 AAGCGTTTCCTGCGACACTAAAGCATTAGTGTCATGTGTCTTATTGATGGGAATGTGTTTTTGGT
66 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGT
* * *
436465 TCCTAATCTTGAAAAGAATGGAGACTATTACGAGAATCAATGCTTGTCTTATTTAAGGGATGAAC
131 TCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAAC
* *
436530 TTTGATTTTGTGGAAAATAAGGGCAAAGAAAAGATTTCCATGCAAAAGAACATCATCAATATCAT
196 TTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCAT
* * * * *
436595 TAATCCTAATGAGGAGAATGTGC-ATAATGCCTAATTACAAAATGAATGAAGATCATTAGTAAAA
261 TTATCCTAATGAGGAGAATGTGCTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAA
* * * *
436659 TCCATATTTGTCTCATTTGAGGTATGAACTTAGACTTTACAAAAACTGGTGGG-AAAATGCCATT
326 TCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTT
* * * * * *
436723 CTAGCGAAACCAAAACATCAATATCGCGTACCCTAGTGAAAAGACTATGTTGATGGTGCCTAATC
391 CTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC
* *
436788 CTGAAAAGAACGAGGATTAGT
456 CTGAAAAGAATGGGGATTAGT
* * * **
436809 TTGACCATTCATGTTTGTCTTATTAAAGAGACAAACTTTGATTCCATCAAAAATAGTGGAAAGAA
1 ATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAA
** ** *
436874 AAGCTTTTCTTATGACACCAAAGCATCAATGTTGTGTATCCTATTGAAGGGAATTTGTTTTTGGT
66 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGT
* * * *
436939 ACCCAATCTTGAAAAGAATGAAGACTGTAATGAGAATCGATGCTTGTCTTATTTAAGGGATGAAC
131 TCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAAC
* * *
437004 TTTGATTTTAAGGAAAATAA-GGCAAAGAAAAGATTTCCATGC-AAAGAAAATCACCAATATCGT
196 TTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCAT
* * * * * *
437067 TTCTCCT-AT-AAG-GAATGTGCTTATAGTGCCTTATCACAAAATGAATGAAAATTATTACAAGA
261 TTATCCTAATGAGGAGAATGTGC-TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGA
*
437129 ATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGAGAAAAATGCCTT
325 ATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTT
* * ** * *
437194 TCTTGAGAAACTAAAACATCAATATCGCATAACCTAATGAGAAGACTATGTTGAT-GTGCCTAAT
390 TCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT
* *
437258 CCTGAAAAGAATGGGAATTTGT
455 CCTGAAAAGAATGGGGATTAGT
* * * * *
437280 TTGACCATTCATGTTTGTCTTATTTAATAGGCAAACTTTGATTCCATAAAAAACGGTGGAAAGAA
1 ATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAA
* * *
437345 ACGCTTTTCTTGCGACACCAAAGCATTAATGTCATGTATCCTATTGATGGGAATGTGTTTTTGGT
66 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGT
* * ** * *
437410 TCCCAATCTTGAAAAGAATGGAAACTGTAATAAGAATTGATGCTTGTCTTATTTAAGGGATGGAC
131 TCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAAC
* * * * *
437475 ATTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCATGAAAAAAAAAATGAACAATATCAT
196 TTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCAT
* * * *
437540 TAATGCTAATGAGGAGAATGTGCTTATAGTGCCCAATCACAAAATAAATGAAGATCATTACTAGA
261 TTATCCTAATGAGGAGAATGTGC-TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGA
* * * * * *
437605 ATCCAGGTTTGCCTTATTTGATGCATGAACATAAACTTTACAAAAATTGGT-GGAAAAA-GCCTT
325 ATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTT
* * * * * * * * * *
437668 TCTTGTGAAACTAGAACATTAATATCGTGCATCCTAATAAAAAAAC-ATGTTTTTTGGTGCCTAC
390 TCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATG-TTTATGGTGCCTAA
* *
437732 TCCTGAAAAAAATAGGGATTAGT
454 TCCTGAAAAGAATGGGGATTAGT
* * * * * *
437755 ATGACTGTTTATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAGGGT-CAAAAAG
1 ATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGA-
* *
437819 AAAGCTTTCCTTGTGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGG-ATAGTGTTTTTG
65 AAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAAT-GTGTTTTTG
* * * * * * * *
437883 GCTCCAAATCTTGAAAAGAATAGAGATTGTTACGAGAATCGATGGTTGTCTTCTTTAGGGGATAA
129 GTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
* *
437948 ACTTTGATTTTAAGGAAAATAA-GGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATC
194 ACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* *
438012 ATTTCTCCTAATGA-G-GAATGCGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
259 ATTTATCCTAATGAGGAGAATGTGC-TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
* *
438075 GAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAAAAATGGTGGGAAAAATGC
323 GAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTAC-AAAAATTGGTGGGAAAAATGC
* * * * *
438140 CTTTCTTGCGAAACCAAAACATCAATATCGCGTATCCAAATGAGAATACTACGTTTATGGAG-CT
387 CTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCT
* * * *
438204 GAATCCTGAAAAAAATAGGGAATAGA
452 -AATCCTGAAAAGAATGGGGATTAGT
* * * *
438230 ATGAGTATTCAAGTTTGTCTTATTTAAGAGATAAACTTTGATTCCA-CAAAAAATGGTGGAAAGA
1 ATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATC-AAAAACGGTGGAAAGA
* * * * ** * * *
438294 AAAGCTTTTCATGCGACACTAAAGCGTCAATGTCATGTGTCCTAAAGAAAGAAATGTGTTTTAGG
65 AAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGG
* * ** * **
438359 TCCCCAATCCTGAAAATG-ATGGAGACTACTGC-ACGAATCGATGCTCATCTTATTTAAGGGATG
130 TTCCCAATCTTGAAAA-GAATGGAGACTGTTACGA-GAATCGATGCTTGTCTTATTTAAGGGATG
* * *
438422 AACTTTGATTTTATGAAAAATAA-GGCAAAGAAAAGAATTCCATGCAAAAGAAAATCATTAATAT
193 AACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATAT
* * * * * * *
438486 CCTTTCTTCTAATGA-G-GAATGTGCTTATAATTCCTAATCTCTAAATGAATGAAGATCATTACT
258 CATTTATCCTAATGAGGAGAATGTGC-TATAGTGCCTAATCACAAAATGAATGAAGATCATTACT
* *
438549 AGAATCCATGTTTGTCCCATTTGAGGCATGAACTTAGACTTTACAAAAAATGGTGGGAAAAATGC
322 AGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGC
* * *
438614 CTCTATTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATGTTTTTTGGTGCC
387 CTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATG-TTTATGGTGCC
* * *
438679 TACTCCT-AAAAAAATAGGGATTAGT
451 TAATCCTGAAAAGAATGGGGATTAGT
* * * *
438704 ATGACTGTTGATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAAAA
1 ATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAA
*
438769 AAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTATCCTATTGAA-GGAATTGTGTTTTTGG
66 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAA-TGTGTTTTTGG
* * * * * * * * * *
438833 CTCTCGATCTGGAAAACAAAGGAGATTGTTACAAGAATCGATGCTTGTCTTATTTACGGTATGAA
130 TTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAA
* * * * * *
438898 GTTCGATTTTAAGAAAAATAA-GGCAAAGAAAAGATTTTCATGCAGAAGAAAATCATCAATATCA
195 CTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCA
* * *
438962 TTTCTCCTAAT-ACG-GAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAC
260 TTTATCCTAATGAGGAGAATGTGC-TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAG
*
439025 AATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAGTTGGTGGGAAAAATGCCT
324 AATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCT
* * * * * *
439090 ATCTTGCGAAACCAAAATATCAATATCGCGTATCCTAATGAGAAGACAATCTTTTTGGTGCCTAA
389 TTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAA
*
439155 TCTTGAAAAG-A----G--T--T
454 TCCTGAAAAGAATGGGGATTAGT
* * * *
439169 -TGACCATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCCATCAAAACCGATGGAAAGAA
1 ATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAA
* *
439233 AGGCTTTTCTT-CTGACACCAAAGCATCAATGTCATGTATCCTATTGATGGGAATGTGTTTTTGG
66 AAGCTTTTCTTGC-GACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGG
* * * * *
439297 TTCCCAATCTTGAAAAGAATGGAGACTGTAATGAGAATCGATGCATGTCTTATTTAAGGGACGTA
130 TTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAA
* * *
439362 CATTGATTTTATGGAAAATAAAGGCAAAGAAAAGATTTCCATGCAAAAAAAAATCGA-CAATATC
195 CTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATC-ATCAATATC
* *
439426 ATTAATCTTAATGAGGAGAGTGTTATGAGGATTGTGCTTATAGTGCCTAATCACAAAATGAATGA
259 ATTTATCCTAAT-----GAG-G--A-GA--A-TGTGC-TATAGTGCCTAATCACAAAATGAATGA
* * * * *
439491 AGATCATTATTGGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTCACAATAATTGGT
311 AGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGT
* * * ** * *
439556 GGGAAAAATGGCTTGCTTGTGAAACCAAAGTATCAATATCATTTATCCTAAAT-AGAAGAAC-AT
376 GGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCT-AATGAGAAG-ACTAT
*
439619 GTTTATGGTGCCTAATCCTAAAAAGAAT-GGGATTAGT
439 GTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGT
* * * * * *
439656 ATGAGTATTCATGTTTGCCTTATTTAACAGAAAAACTTTGATTCTATAAAAAACGGTGGAAAGAA
1 ATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAA
** * * * * * * *
439721 AAGCCCTTCTTGCGACAACAAAGCTTCATTGTCATGTATCATAATGAAGGAAATGTGTTTTAGGT
66 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGT
* * * * * * ** * *
439786 TCCCAAACTTAAAAACAATGGAGACTATTATGAGAATCGTTGCTTCCCTAATTTAAAGGATGCAA
131 TCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATG-AA
* * * * *
439851 -TTTGATTTTATAGAAAAT-AGGGCAAATAAAATATTTTCATGCTAAAGAAAATCATCAATATCA
195 CTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCA
* * ** * * *
439914 TATATACGGATAAGGAGAATGTGTTTATAGTGCCTAATCACCAAATGAATGAAGATCATTACTAG
260 TTTATCCTAATGAGGAGAATGTG-CTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAG
* * *
439979 AATCCATGTTTGTTTCATTTGAGGCATGAACTTAGACTTTACAAAAATGGGTGGGTAAAATGCCT
324 AATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCT
* * * * * *
440044 TTCTTGTGAAACCAAACCATCAATATCGTGTATCCTCAGGAGAAGACTATGCTTATGGTGCCTAG
389 TTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAA
*
440109 TCTTGAAAAGAATGGGGATTAGT
454 TCCTGAAAAGAATGGGGATTAGT
* * * * * * *
440132 TTCACTATTTATGTTTGTCCTATTTAAAAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAA
1 ATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAA
* *
440197 AAGCTTTTCTTGCGACACCAAAGCATTAATGTCATGTATCCTATTGAAGAGAATGTGTTTTTGGT
66 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGT
* * * *
440262 ACCCAATCTTGAAAAGAATGTAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAAT
131 TCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAAC
* *
440327 TTTGATTTTATGAAAAAT-AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAGTCATCAATATCAT
196 TTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCAT
* **
440391 TTCTCCTAATGA-G-GAATGTGCTTATAGTGCCTAATCACAAAATGAACAAAGATCATTACTAGA
261 TTATCCTAATGAGGAGAATGTGC-TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGA
* * * *
440454 ATCCATGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAATAATTGATGGGAAAAATGCCTT
325 ATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTT
* * * * *
440519 TCTTGTGAAACCAAAGCATCAATATCGTTTATCCTAAAT-AGTAGAAC-AAGTTTATGGTGCCTA
390 TCTTGCGAAACCAAAACATCAATATCGTGTATCCT-AATGAGAAG-ACTATGTTTATGGTGCCTA
*
440582 ATCCTGAAAAGAATAGGGATTAGT
453 ATCCTGAAAAGAATGGGGATTAGT
* *
440606 CTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAA
1 ATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAA
*
440671 AAGC-TTTCTTGCGACACCAAAGCATTAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGT
66 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGT
* * * * * * *
440735 ACCTAATCTTGAAAAGAATGTAGATTGTTACGAGTATCGATGCTTGTCTTATTTAAGAGATGAAT
131 TCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAAC
*
440800 TTTGATTTTATGGAAAATAA-GGCAAAGAAAAGATTTCCATGCAAAAGAAAGTCATCAATATCAT
196 TTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCAT
* * *
440864 TTCTCCTAATGA-G-GAATGTGTTTATAATGCCTAATCACAAAATGAATGAAGATCATTACTAGA
261 TTATCCTAATGAGGAGAATGTG-CTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGA
* *
440927 ATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTAGTGGGAAAAATGCCTT
325 ATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTT
* * * *
440992 TCTTGCGAAACCAAAGCATCAACAACGTGTATCCTAAAGAGAAGAAC-ATGTTTATGGTGCCTAA
390 TCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAG-ACTATGTTTATGGTGCCTAA
*
441056 TCCAGAAAAGAATGGGGATTAGT
454 TCCTGAAAAGAATGGGGATTAGT
* * * * *
441079 CTGAGTATTCATGTTTGTCCTATTTAAGTGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAA
1 ATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAA
* * * * * * *
441144 AAGCCTTTCATGCGACACCAAAGCGTCAAT-TCATGTATCCTAATGAAAGAAATGTGTTTTAGGT
66 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGT
* * * ** * * *
441208 TCCCAATCCTGAAAATG-ATGGTGATTACTACGAGAATCAAAGCTCGTCTTATTTAAGGGATGAA
131 TCCCAATCTTGAAAA-GAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAA
* * * * * * *
441272 CTTTGATTATAAGAAAAAT-AGGGCAAATAAAAGATTTCCAAGCAAAAGAAAATCATTAATGTCA
195 CTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCA
* * * * ** * *
441336 TTTATCAT-ATCGACGA-AATATGCTTATAGTTCCTAATCACAAAATGAATGGCGATCATTAATG
260 TTTATCCTAAT-GAGGAGAATGTGC-TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
* * * * *
441399 GAATCAATGTTTATCTCATTTAAGGCACGAACTTAGACTTTACAAAAATT-GTGGGAAAATTGCC
323 GAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCC
* * ** * * *
441463 TTTCTTACGAAACCAAAATATCAATATCCCGCATCCTAATGAGAAGACTATATTTGTGGTGCCTA
388 TTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTA
*
441528 ATCCTGGAAAGAATGGGGATTAG-
453 ATCCTGAAAAGAATGGGGATTAGT
** * *
441551 A--A--AGAC-TG--T-TCTTGTTT--GAGAC--ACTTTGATTCCATCAAAGACGGTGGAAAGAA
1 ATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAA
* * * * ** ***
441604 AAACTTTTCTTGCGACACCAAAGCATCAATGTCGTGTAGCCTACTGAACAGAATGTGTTTTCAAT
66 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGT
* * * *
441669 ACCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATC-ACTACTTGTCTTATTTAAGGGACGAA
131 TCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGA-TGCTTGTCTTATTTAAGGGATGAA
* * * ** *
441733 ATTTGATTTTAAGGAAAAT-AGGGCAAATAAAAGATTTTGAT-AATAAAGAAAATCATCAATATC
195 CTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCATGCA-AAAGAAAATCATCAATATC
* * *
441796 ATTTATCCTACA-GAGGAGAATGTGCTTATAGTGCCTAATTATAAAATGAATGAAGAACATTACT
259 ATTTATCCTA-ATGAGGAGAATGTGC-TATAGTGCCTAATCACAAAATGAATGAAGATCATTACT
* * ** * * * *
441860 AGAATCCATGTTTGTCTTATTTGATGCACAAACTTAAACTTTACAAAAATTGGGGGGGAAAAGGC
322 AGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGC
*
441925 CTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGATAAGAAC-ATGTTTATGGTGCC
387 CTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAG-ACTATGTTTATGGTGCC
* *
441989 TAATCCTAAAAAGAATGGGGAGTAGT
451 TAATCCTGAAAAGAATGGGGATTAGT
* *
442015 ATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTC-TCAAAAACGGTGGAAAGA
1 ATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA-TTCCATCAAAAACGGTGGAAAGA
* * * *
442079 AAAGCTTTTCTTGAGACACCAAAGCATCAATGTCATGTATCCCATTGATGGGAATTTGTTTTTGG
65 AAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGG
* *
442144 TTCCCAATCTTGAAAAGAATGGAGACTGTTACGAAAATCGATGCTTGTCTTATTTAAGGGATAAA
130 TTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAA
* *
442209 CTTTGATTTTATGGAAAATAA-GGCAAATAAAAGATTTCCATGAAAAAGAAAATCATCAATATCA
195 CTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCA
442273 TTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAG
260 TTTATCCTAATGAGGAGAATGTGC-TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAG
** * *
442338 AATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAATAATTGGGGGGAAAAATGCCT
324 AATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCT
* * *
442403 TTCTTGCGAAACCAAAGCATCAATATCGTTTATCCTAAAT-AGTAGAAC-ATGTTTATGGTGCCT
389 TTCTTGCGAAACCAAAACATCAATATCGTGTATCCT-AATGAGAAG-ACTATGTTTATGGTGCCT
* *
442466 AATCCTAAAAAGAATAGGGATTAGT
452 AATCCTGAAAAGAATGGGGATTAGT
* * * * * *
442491 CTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACATTGATTCTATCGAAAATGGTGGAAAGAA
1 ATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAA
* * *
442556 AAG-TTTTCTTGC-ATCACCAAACCATCAATGTCATGTATCATATTGAAGGGAAGGTGTTTTTGG
66 AAGCTTTTCTTGCGA-CACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGG
* * * * *
442619 TACCCAATCTTGAAAAGAATGTAGATTGCTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAA
130 TTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAA
*
442684 CTTTGATTATA-GGCAAAATAA-GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
195 CTTTGATTTTATGG-AAAATAAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
** * * *
442747 ATTTCCCCTAATGA-G-GAATATGCTTATAGTGCCTAATAACAAAATGAATGAAGATCATTAGTA
259 ATTTATCCTAATGAGGAGAATGTGC-TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
* * * * * * *
442810 GAATCCATGCTTGCCACATTTGAGGTACGAACTTAGACCTTA-AAATATTTGGTGGGAAAAATGC
323 GAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAA-AATTGGTGGGAAAAATGC
* * * * * *
442874 CTTTCTTGCAAAACCAAAGCATCACTTTTGTGTATCCTAATGAGAAGAAC-ATATTTATGGTGCC
387 CTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAG-ACTATGTTTATGGTGCC
*
442938 TAATCCTGGAAAGAATGGGGATTAGT
451 TAATCCTGAAAAGAATGGGGATTAGT
* * * *
442964 ATG-------A-GTTTGTCTTGTTTAAGAGACAAACTTTGACTCTATCAAAAACAGTGGAAAGAA
1 ATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAA
* *
443021 AAGCTTTTCTTGCGACGCCAAAGCATCAATGTCATGCATCCTATTGATA-GGAATGTGCTTTTTT
66 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGA-AGGGAATGTG---TTTT
*
443085 TGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTGAGGGAT
127 TGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGAT
* * *
443150 GAACTTTGATTTTATGGAAAATAA-GGCAAATAAAAGATTTCCATGCAAAAGAAAATTATCAGTA
192 GAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATA
* * *
443214 TCATTTCTCCGAATGA-G-GAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCTTTAC
257 TCATTTATCCTAATGAGGAGAATGTGC-TATAGTGCCTAATCACAAAATGAATGAAGATCATTAC
* ** * * *
443277 TAGAATCCATGTTTGTCTCA-TTCACACACGAACTTAAACTTTACAAAAATTAGTGGGAAAAATG
321 TAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATG
* * ** *
443341 CCTGTCTTGCGAAACAAAAACATCAATATCGTGTGCCCTAATGAGAAGAAC-ATCTTTATGGTGC
386 CCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAG-ACTATGTTTATGGTGC
* *
443405 CTAATCCTAAAAAGAATGGAGATTAGT
450 CTAATCCTGAAAAGAATGGGGATTAGT
* * *
443432 ATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAG-A
1 ATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAA
* * ** * **
443496 ATGGTTTTCTTATGACACCAATGCATCAATGTCATGTATTATATTGAAGGGAATGTGTTTTTGGT
66 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGT
* * * * * * * * * *
443561 ACCCAATCTTGAAAAGAATGCAGATTATTACAAGAATTGAAGCTCGTTTTATTTAGGGGATGAAC
131 TCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAAC
** * * *
443626 TTCAATTTTAAGGAAAATAA-GGCAAAGAAAAGATTTTCATGCAGAAGAAAATCATCAATATCAT
196 TTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCAT
* * * * *
443690 TTCTCCTAAT-ACG-GAATGTGCTTATAGTGCCTAATCACAAAATGAATGAGGGTCATTACTAAA
261 TTATCCTAATGAGGAGAATGTGC-TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGA
* * * * * **
443753 ATCCATGTTTCTCTCATTTGAGGCATGAACTTAGACATTACAAAAGTTGGTAGGAAAAATACCCA
325 ATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTT
* * *
443818 TCTTGCGAAACCAAAACATCAATATTGCGTATCCTAATGAGAAGACAATGTTTATGGTGCCTAAT
390 TCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT
*
443883 CCTGAAAAGAATGGGGTTTAGT
455 CCTGAAAAGAATGGGGATTAGT
* * * * * * *
443905 TTGACCATTCATCTTTGTCTTATTTAAGAAATAAACTTTGATTCCGTCAAAAACGGTGGAAATAA
1 ATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAA
* * * *
443970 AGGCTTTTCTTGCAACACGAAAGCATCAATGTCATGTATCCTATTGATGGGAATGTGTTTTTGGT
66 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGT
* * * * * *
444035 TCCCAATATTGAAACGAGTGGAGACTCTAACGAGAATCGATGCTTGTCTTATTTAAGGGACGAAC
131 TCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAAC
* * *
444100 TTTTATTTTATGGAAAATAAGGGCAAAGAAAAGA-TTCTCATGCGAAAAAAAAATCATCAAAATC
196 TTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTC-CATGC-AAAAGAAAATCATCAATATC
* *
444164 ATTAATCCTATTGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
259 ATTTATCCTAATGAGGAGAATGTGC-TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
* * * * * *
444229 GAAAATCTAGGTTTGTCTCATTTGACGTATGAACTTAAACTTTACAAAAATTGGTGGGAAAAAAG
323 G--AATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATG
*
444294 CCTTTCTTGCAAAACCAAAACATCAATATCGTGTA-CCTAATGAGAAGAAC-ATGTTTATGGTGC
386 CCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAG-ACTATGTTTATGGTGC
* *
444357 CTAATCCAGAAAACAATGGGGATTAGT
450 CTAATCCTGAAAAGAATGGGGATTAGT
* * * * * *
444384 ATCAGTATTCATGTTTGTCTTATTTAAGAGACAAGCTTTAATTCCATGAAAAATGGTGGAAAGAA
1 ATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAA
* *
444449 AAGCTTTTCTTGCGACACCAAAGCATCAATATCAAGTATCCTATTGAAGGGAATGTGTTTTTGGT
66 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGT
* * * * * * * * * * * *
444514 ACCCAATCTTGAATAGAAAGTACATTGTTGCAAGAATCGATGCTAGTCTTATTTAGGGGGTCAAC
131 TCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAAC
* * *
444579 TTTGATTTAATGGAAAATAA-GGCAAATAAAAGATTTACATGCAAAAGAAAATCATCAATATCAT
196 TTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCAT
* *
444643 TTCTCCTAATGA-G-GAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGG
261 TTATCCTAATGAGGAGAATGTGC-TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGA
*** * *
444706 ATCCATGTTTGTCTCATTTGAGGTGCGAACTTAGACTTTACAACAATTGGTGGGAAAAGTGCCTT
325 ATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTT
* * * * ***
444771 TCTTGCGAAGCCAAAGCATCAATATCGTGTATCCCAAAT-AGGAGAAC-ATGCGCATGGTGCCTA
390 TCTTGCGAAACCAAAACATCAATATCGTGTAT-CCTAATGAGAAG-ACTATGTTTATGGTGCCTA
*
444834 ATCCT-AAGAAGAATAGGGATTAGT
453 ATCCTGAA-AAGAATGGGGATTAGT
* * * * * *
444858 ATG-CGTATTTATGTTTGTCTTAATTAAGAGACGAACTTTGATTCTATGAAAAATGGTGGAAA-A
1 ATGAC-TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGA
* * * * * **
444921 AAAGCCTTTCTAGTGACACCAAAGCATCAATGTCATGTATCCTATCGAAGGAAATGTGTTTAAGG
65 AAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGG
* * * * * * * *
444986 TTCCTAATCCTAAAAATAATGGAGCCTATTATGAGAATCAATGCTTGTCTTATTTAAGGGATGAA
130 TTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAA
* * * * * * *
445051 CATTGATTTTATGGAAAATAA-AGTAAAGAAATGTTTTCCATGTAAAAGAAAATCATCAATTTCA
195 CTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCA
* *
445115 TTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGAACATTTCTAG
260 TTTATCCTAATGAGGAGAATGTGC-TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAG
* * * * *
445180 AATCCATGTTTATCTCTTTTGAGGCATGAACTTAGACTTTACAAAAGTTGGTGGAAAAAAAAGCC
324 AATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGG-GAAAAATGCC
* * * *
445245 ATTCTTGCGAAACCAAAACATCAATATGGCGTATCCTAATGAGCAGACTATGTTTATGGTGCCTA
388 TTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTA
*
445310 ATCTTGAAAAGAATGGGGATT-GAT
453 ATCCTGAAAAGAATGGGGATTAG-T
* * * * * *
445334 TTGACCATACATGTTTGTCTAATTTAAGAGACAAACTTTGATTCCATCAAAAACGATGGAAAAAA
1 ATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAA
* * * * *
445399 AAGCTTTTCTTGCAACACGAAAGCATGAATGTCATGTATCCTATTGATGGGAATGTGTTTTTAGT
66 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGT
* * * * ** **
445464 TCCCAATCTTGAAACGAGTGGAGACTCTAACGAGAGCCGATGCTTGTCTTATTTAAGGGGGGAAC
131 TCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAAC
* * ** *
445529 TTTGATTTTTTGGAAAATAAGGGCAAAGAAAAGATTTTCATGCAAAAGAAGGTCATCAAAATCAT
196 TTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCAT
* * * *
445594 TAATCCTATTGAGGAGAATGTGCTTATAGTGCCTAATTACAAAATGAATGAAGATCATTATTAGA
261 TTATCCTAATGAGGAGAATGTGC-TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAG-
* * * * * *
445659 AAATCTAGGTTTGTCTCATTCGACGCATGAACTTAAACTTTACAAAAATTGGTGGGAAAAAAGCC
324 -AATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCC
* * * * *
445724 TTTCTTGCCAAACCAAAACTTCAATATCGTGTATCTTAATGAGAAGAATATATTTATGGTGCCTA
388 TTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTA
* * *
445789 ATCCAGAAAACAATGGGGATTGGT
453 ATCCTGAAAAGAATGGGGATTAGT
* * * * * * * *
445813 ATCAGTATTCATGTATGTCTTAATTAAGAGACAAGCTTTAATTCCATGAAAAACAGTGGAAAGAA
1 ATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAA
* * * *
445878 AAGCTTTTCTTGCAACACCAAAGCATCAATGTCAAGTATCCTATTGAAAGGAATGTGCTTTTGGT
66 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGT
* * * * * * * * * * *
445943 ACCCAATCTTGAATAGAATGTACATTGTTGCAAGAATCGATGCTAGTCTTATTTAGGGGGTCAAC
131 TCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAAC
* ** * *
446008 TTTGATTTTATGGAAAATAA-GGTAACTAAAAGATTTACAAGCAAAAGAAAATCATCAATATCAT
196 TTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCAT
* * *
446072 TTCTCC-ATATGA-G-GAATGTGCTTATAGTGCTTAATCACAAAATGAATGAATATCATTACTAG
261 TTATCCTA-ATGAGGAGAATGTGC-TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAG
* * *
446134 GATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAATAATTGGTGGGAAAAGTGCCT
324 AATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCT
* * * * * ***
446199 TTCTTGCGAAGCGAAAGCATCAATATCGTGTATCCCAAAT-AGGAGAAC-ATGCGCATGGTGCCT
389 TTCTTGCGAAACCAAAACATCAATATCGTGTAT-CCTAATGAGAAG-ACTATGTTTATGGTGCCT
*
446262 AATCCT-AAGAAGAATAGGGATTAGT
452 AATCCTGAA-AAGAATGGGGATTAGT
* * * ** * *
446287 ATG-CGATTTATGTTTGTCTTAATTAAGAGATGAACTTTGATTCTA-CGAAAAATGGTGGAAA-A
1 ATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATC-AAAAACGGTGGAAAGA
* * * * * *
446349 AAAGCCTTTCTAGTGACACCAAAGCATCAATGTCATGTATCCTATCGAAGGAAATGTGTTTTAGG
65 AAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGG
* * * * * *
446414 TTCCTAATCCT-AAACACAATGGAGACTATTATGAGAATCAATGCTTGTCTTATTTAAGGGATGA
130 TTCCCAATCTTGAAA-AGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
* * * * * * *
446478 ACATTAATTTTATGGAAAATAA-GGTAAAGAAATGATTTCCATGTAAAAGAAAGTCATCAATTTC
194 ACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
*
446542 ATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTTCTA
259 ATTTATCCTAATGAGGAGAATGTGC-TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
* * * * *
446607 GAATCCATGTTTATCTCTTTTGAGGCATGAACTTAGACTTTACAAAAGTTGGTGGAAAAAAAAAG
323 GAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGG--GAAAAATG
* * ** *
446672 CCATTCTTGCGAAACCAAAACATCAATATGGCATATCCTAATGAGCAGACTATGTTTATGGTGCC
386 CCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
*
446737 TAATCTTGAAAAGAATGGGGATT-GAT
451 TAATCCTGAAAAGAATGGGGATTAG-T
* * * * *
446763 TTGACCATACATGTTTGTCTTATTTAAGACACAAACTTTGATTCCATCAAAAA-GGATGGGAAGA
1 ATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGG-TGGAAAGA
* * * *
446827 AAAGCTTTTCTTGCAACACGAAAGCATGAATGTCATGTATCCTATTGATGGGAATGTGTTTTTGG
65 AAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGG
* * * * * * *
446892 TTCCCAATCCTGAAACGAGTGGAGACTCTAACGAGAATCGATGCTTGTCTTATTTAGGGGAGGAA
130 TTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAA
* * * *
446957 CTTTAATTTGT-TGGAAAATAAGGGCAAAGAAAAGATTCTTCATGCAAAAGAAGATCATCAAAAT
195 CTTTGATTT-TATGGAAAATAAGGGCAAAGAAAAGATT-TCCATGCAAAAGAAAATCATCAATAT
* *
447021 CATTAATCCTATTGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACT
258 CATTTATCCTAATGAGGAGAATGTGC-TATAGTGCCTAATCACAAAATGAATGAAGATCATTACT
* * * * *
447086 AGAAAATCTAGGTTTGTCTCATTTGACGCATGAACTTAAACTTTACAAAAATTGGTGGGAAAAAA
322 AG--AATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAT
* * * *
447151 GACTTTCTTGCAAAACCAAAACTTCAATATCGTGTATCCTAATGAGAAGAAC-GTGTTTATGGTG
385 GCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAG-ACTATGTTTATGGTG
* *
447215 CCTAAT-CTAGAAAACAATGGGGATTGGT
449 CCTAATCCT-GAAAAGAATGGGGATTAGT
* * * * * * *
447243 ATCAGTATTCATGTATGTCTTAATTAAGAGACAAGCTTTAATTCCATGAAAAACGGTGGAAAGAA
1 ATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAA
* * * *
447308 AAGCTTTTCTTGCAACACCAAAGCATCAATGTCAAGTATCCTATTGATGGGAATGTGCTTTTGGT
66 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGT
* * * * * * * * * * * *
447373 ACCCAATCTTGAATAGAATGTACATTGTTGCAAGAATCGATCCTAGTCTTATTTAGGGGGTCAAC
131 TCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAAC
* ** *
447438 TTTGATTTTATGGAAAATAA-GGTAACTAAAAGATTTACATGCAAAAGAAAATCATCAATATCAT
196 TTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCAT
* * *
447502 CTCTCCTAATGA-G-GAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGG
261 TTATCCTAATGAGGAGAATGTGC-TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGA
* * *
447565 ATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAACAATTGGTGGGAAAAGTGCCTT
325 ATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTT
* * * * *
447630 TCTTGCGAAGCCAAAACATCAATATCGTGTGTCCCAAAT-AGGAGAAC-ATGTGTATGGTGCCTA
390 TCTTGCGAAACCAAAACATCAATATCGTGTAT-CCTAATGAGAAG-ACTATGTTTATGGTGCCTA
* *
447693 ATCCT-ATGAAGAATAGGGATTAGT
453 ATCCTGA-AAAGAATGGGGATTAGT
* * * * * * * *
447717 ATGAGTATTTATGTTTGTTTTAATTAAGAGACGAACTTTGATTCTATAAAAAAATGGTGGAAA-A
1 ATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCAT-CAAAAACGGTGGAAAGA
* * * * * **
447781 AAAGCCTTTCTAGTGACACCAAAGCATCAATGTCATGTATCCTATCGAAGGAAATGTGTTTTAAG
65 AAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGG
* * * * * * * *
447846 TTCCTAATCCTAAAAACAATGGAGACTGTTATGAGAATCAATGCTTGTCTTATTGAATGGATGAA
130 TTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAA
* * * * *
447911 CATTGATTTTATGGAAAAT-AGGGTAAAGAAATGATTTCCATGCAAAAGAAAATCGTCAATTTCA
195 CTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCA
* * * *
447975 TTTATCCTAATGAGGAGAATGTACTTATAGCGCCTAATCACAAAATGAATGAATATCATTACTAA
260 TTTATCCTAATGAGGAGAATGTGC-TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAG
* * ** ** *
448040 AATCCATGTTTGTCTCTTTTGAGGCATGAACTTACACTTTACAAATGTTGGTGAAAAAAAAGCCT
324 AATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCT
* *
448105 TTCTTGCGAAACCAAAACATCAATATGGTGTATCCTAATGAGCAGACTATGTTTATGGTGCCTAA
389 TTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAA
* *
448170 TCTTGAAAAGAATGGGGATTGGT
454 TCCTGAAAAGAATGGGGATTAGT
* * * *
448193 TTGACCATACATGTTTGTCTTATTTAAGAGACAAA-TATTGATTCCATAAAAAACGGTGGAAAGA
1 ATGACTATTCATGTTTGTCTTATTTAAGAGACAAACT-TTGATTCCATCAAAAACGGTGGAAAGA
* ** * * *
448257 AAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCAAATTGAAGGAAATCTGTTTTTAG
65 AAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGG
* * * * * *
448322 TACCAAATCTTGAAAAAAATGGAGACTGTTACGAGAATTGATGCTTGTCTTATTGAAGGGATAAA
130 TTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAA
* *
448387 CTTTGATTTTATGGAAAATAAGGGTAAAGAAAAGATTTCCATGCAAAA-AAAATCATCAATATCG
195 CTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCA
* * * *
448451 TTAATCCTAATGAGGAGAATGTTCTTATAATGCCTAATCACAAAATGAATGAAGAT-GTTACTAG
260 TTTATCCTAATGAGGAGAATGTGC-TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAG
* * * * *
448515 AATCCATGTTTGTTTCATATGAGGCATGAACTTAGACTTTGCAAAAATTGGTGGGTAAAATACCT
324 AATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCT
* **
448580 TTCTTGC-AATACCAAAACATTAATATCACGTATCCTAATGAGAAGACTATGTTTATGGTGCCTA
389 TTCTTGCGAA-ACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTA
* * *
448644 CTCCTGAAAAGAAAGGAGATTAGT
453 ATCCTGAAAAGAATGGGGATTAGT
* ** * * * * *
448668 TTGGTTATTCGTGTGTGTCTTATTTAAGAGACAAACTTTGATTTCATCAAAAACGGTGCAAAAAA
1 ATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAA
* * * *
448733 AAGCTTTTCTTGCGACACCAAAGCATCGATGTCATCTATCCTATTGAAGGGAATATGGTTTTGGT
66 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGT
* * * * * *
448798 ACACAATCTTGAAAAGAATGTAGATTGTTACGATAATCGATGCTTGTCTTATTTAAGGGATGAGC
131 TCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAAC
448863 TTTGATTTTATGGAAAATAA-GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCAT
196 TTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCAT
* * * *
448927 TTCTCCTAAT-ACG-GAATGTGCTAATAGTGCCTAATCAGAAAATAAATGAAGATCATTACTAGA
261 TTATCCTAATGAGGAGAATGTGCT-ATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGA
* * *
448990 ATCCACGTTTGTCTCATTTGAGGCATGAACCTAGACTTTACAAAACTTGGTGGGAAAAATG-CTT
325 ATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTT
* * * * *
449054 ATCTTGCAAAACCAAAACATCAATATGGCGTATCCTAAAGAGAAGACAATGTTTATGGTGCCTAA
390 -TCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAA
* *
449119 TCTTGAAAAGAATGGGGTTTAGT
454 TCCTGAAAAGAATGGGGATTAGT
* * * * *
449142 TTGACCATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCCATCAAAAATGATGGAAAGAA
1 ATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAA
* * * *
449207 AGGCCTTTCTTGCGGCACCAAAGCATCAATGTCATGTATCCTATTGATGGGAATGTGTTTTTGGT
66 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGT
* * * * * *
449272 TCCCAATCTTGAAACA-AGTGGAGACTCTAACAAGGATCAATGCTTGTCTTATTTAAGGGATGAA
131 TCCCAATCTTGAAA-AGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAA
* * * ** * * *
449336 CTTTGATTTTATGGAAAATAAGGGCCAATAAATGATTTTAATTCGAAAGAAAATCATCAAAATCA
195 CTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCA
* *
449401 TTAATCCTATTGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAG
260 TTTATCCTAATGAGGAGAATGTGC-TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAG
* * * * * *
449466 AAAATCTAGGTTTGTCTTATTTGATGCATGAACTTAAACTTTACAAAAATTGGTAGGTAAAAA-G
324 --AATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGT-GGGAAAAATG
*
449530 CCTTTCTTGCAAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGAAC-ATGTTTATGGTGC
386 CCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAG-ACTATGTTTATGGTGC
* *
449594 CTAATCCAGAAAATAATGGGGATTAGT
450 CTAATCCTGAAAAGAATGGGGATTAGT
* * * * * **
449621 ATCAGTATTCATGTTTGTCTTATTTAAGAGACTAACTTTGATTCTATGAAAAATAGTGGAAAGAA
1 ATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAA
* *
449686 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCAAGTATCCTATTGAAGGAAATGTGTTTTTGGT
66 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGT
* * * * * * * * * * *
449751 ACCCAGTCTTGAATAGAAAGTACATTGTTGCAAGAATCGATGCTAGTCTTATTTAAAGGG-TCAA
131 TCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTT-AAGGGATGAA
* * * *
449815 CTTTGATTTTATGGAAATTAA-GGCAAATAAAAGATTTACATGCATAAGAAAATCATCAATATCA
195 CTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCA
* *
449879 TCTCTCCTAATGA-G-GAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAG
260 TTTATCCTAATGAGGAGAATGTGC-TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAG
* ** * * *
449942 GATCCATGTTTG--TCATTTGAGGTGTGAACTTAAACTTTACAACAATTGGTGGGAAAAATACCT
324 AATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCT
** * * * * * *
450005 TTCTTATGAAGCCAAAGCATCAACATCATGTATCCCAA-GTAGGAGAAC-ATGTTTATGGTGCCT
389 TTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATG-AGAAG-ACTATGTTTATGGTGCCT
*
450068 AATCCTAAAAAGAATGGGGATTAGT
452 AATCCTGAAAAGAATGGGGATTAGT
* * ** * *
450093 ATGAGTATTTATGTTTGTCTTATTTAAGAGATGAACTTTGATTCCATAAAAAATGGTGG-AA-AA
1 ATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAA
* * * * * *
450156 AAGCCTTTCTAGTGACACCAAAGCGTCAATGTCATGTATCTTATTGAAGGAAATGTGTTTTAT-G
66 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTT-TGG
* * * * * * *
450220 TTTCTAATCCTT-AAAACAATAGAGACTGTTATGAGAATCAATGTTTGTCTTATTTAAGGGATGA
130 TTCCCAAT-CTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
* * * * *
450284 ACATTGATTTTATGGAAAAT-AGGGTAAAGAAATGATTTCCATGTAAAAGAAAATCATTAATATC
194 ACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
450348 ATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
259 ATTTATCCTAATGAGGAGAATGTGC-TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
* * * * * *
450413 GGATCCATGTTTGTCTCTTTTGAGGCTTGAACTTAGAGTTTACAAAAGTTGGTGGTAAAAATGCC
323 GAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCC
* * * *
450478 TTTCTTGTGAAACCAAAACATCAATATGGCGTATCCTAATGAGCAGACTATGTTTATGGTGCCTA
388 TTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTA
*
450543 ATCTTGAAAAGAATGGGGATTAGT
453 ATCCTGAAAAGAATGGGGATTAGT
* * * * * *
450567 TTGACCATACATATTTTTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAAGAA
1 ATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAA
* * * * *
450632 AAGCTTTTCTTGTGACACCAAAGCATTAATGTCGTGTATCCTATTGAAGGAAATTTGTTTTTGGT
66 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGT
* * * * * *
450697 ACCCAATCTGGAAAAAAATGGAGGCTGTTACGAGAATCGATGCTTATCTTATTTTAGGGATGAAC
131 TCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAAC
*
450762 TTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCTATGCAAAAGAAAATCATCAATATCAT
196 TTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCAT
* * *
450827 TAATCCTAATGAGGAGAATGTTCTTATAATGCCTAATCACAAAATGAATGAAGATCATTACTAGA
261 TTATCCTAATGAGGAGAATGTGC-TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGA
* * * * * ** *
450892 ATTCATGTTTGTCTCATTTGACGCACGAACCTAAACTTTACAAAAATTGG-GCAAAAAAATACCT
325 ATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTG-GGAAAAATGCCT
* * ** * * * *
450956 TTCTTGCAAAAACAAAATGTTAATATCAT-TGATCCTAATGAGACGAACT-TGTTTATGGTACCT
389 TTCTTGCGAAACCAAAACATCAATATCGTGT-ATCCTAATGAGAAG-ACTATGTTTATGGTGCCT
*
451019 AATCCTAAAAAGAATGGGGATTAGT
452 AATCCTGAAAAGAATGGGGATTAGT
* * * ** ** * *
451044 ATGAGC-ACTCATGTTTGTCTTATTTAAGAGACAAGCTTTTATTTTATTGAAAACGTTGGAGAGA
1 ATGA-CTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGA
* * * *
451108 AAAGCTTTTCTTGCAATACCAAAGTATCAATGTCATGTATCCTATTGAAGGGACA-CTGTTTTTG
65 AAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGA-ATGTGTTTTTG
* * * * * *
451172 GCTCCCAATCTTGAAAAGAATGGAAATTGTTACGAGAATCGATGCTTGTCTTCTCTAGGGGATGA
129 GTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
* * *
451237 ATTTTGATTTT-TCAGAAAATAA-TGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATAT
194 ACTTTGATTTTAT-GGAAAATAAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATAT
*
451300 CATTAATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACT
258 CATTTATCCTAATGAGGAGAATGTGC-TATAGTGCCTAATCACAAAATGAATGAAGATCATTACT
* * *
451365 TGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACATTACAAAAATTGGTGGGCAAAATGC
322 AGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGC
* * ** * *
451430 CTTTCTTGCAAAACCAAAACATTAATATCGCATATCCTAATAAGAGGACTATGTTTATGGTGCCT
387 CTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCT
* *
451495 AATCCTGAAAAGAATAGGTATTAGT
452 AATCCTGAAAAGAATGGGGATTAGT
* * * * * *
451520 TTGACCATTCATGGTTGTCTTATTTAAGAGACAAATTTTGATTCTATCAAAAACGGTGGAAGGAA
1 ATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAA
* ** * * *
451585 AAGCTTTTCTT-CTAACATTAAAACATC-ATGTCATGTATCCTATTGATGGGAATTTGTTTTTGG
66 AAGCTTTTCTTGC-GACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGG
* * * * *
451648 TTCCTAATCTTGAAAAGAATGGAGACTGTAATGAGAATCGATGCTTGT-ATATTTAAGGGATAAA
130 TTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAA
* *
451712 CTTTGATTTTATGGAAAATGAGGGCAAAGAAAAGATTTCCAGGCAAAAGAAAATCATCAATATCA
195 CTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCA
** * * * *
451777 TAAATCCTAATGAGGACAATGTGCTTATATTGCCTAATCACAAAATGAATGATGATCATTAATAG
260 TTTATCCTAATGAGGAGAATGTGC-TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAG
* * * * * * * * *
451842 AATCTAGGTTTGTCACATTGGATGCATGAACTTAAACTTTGCAAAATTTGGTGGGAAAAATGCAT
324 AATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCT
* * * * *
451907 TTCTTGCGAAACCAAAGCATCAACAACGTGTATTCTAATAAGAAGACTATGTTTATGGTGCCTAA
389 TTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAA
451972 TCCTGAAAAGAATGGGGATTAGT
454 TCCTGAAAAGAATGGGGATTAGT
* * * * *
451995 ATGACTATTCATGTTTATCTTATTTATGTGAAAAACTTTGATTCTATCAAAAACGGTGGAAAGAA
1 ATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAA
* * * * *** *
452060 AAGCTTTTCATGCAACACCAAAGCATCAATTTCATGTATCCTAATGAAATAAATGTGTTTTAGGT
66 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGT
* * ** * *
452125 TCCCAATCCTGAAAATG-ATGGAGACTATGGCGAGAATTGTTGCTTGTCTTATTTAAGGGATGAA
131 TCCCAATCTTGAAAA-GAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAA
* * * * *
452189 CTTTGATTATAAGGAAAAT-AGGGCAAATAAAAGATTTCCAAGCAAAAGAAAATCATTAATATCA
195 CTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCA
* * *
452253 TTTATCGTAATGAGGAGAATGTGCCTATAGCGCCTAGCGCCTAATCCCAAAATGAATGACGATCA
260 TTTATCCTAATGAGGAGAATGTG-CTATA--G--T---GCCTAATCACAAAATGAATGAAGATCA
* * * * * * * *
452318 TTAATAGAATCCTTGTTTGTCTCCTTTAAGGCACGAGCTTAAACTTTACAAAAATT-GTGAG-AA
317 TTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAA
* *
452381 AATCGCCTTTCTTGCAAAACCAAAACATCAATATCGTGTATCCTAATAAGAAGACTATGTTTATG
382 AAT-GCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATG
452446 GTGCCTAATCCTGAAAAGAATGGGGATTAGT
446 GTGCCTAATCCTGAAAAGAATGGGGATTAGT
* *
452477 ATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATAAAAAATGGTGGAAAGAA
1 ATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAA
* * * * * *
452542 AAGCTTTTCTTGCGCCACCAAGGCATCAATGTCGTGTATCCTATTAAAGGG-ATGTGGTTTTGGA
66 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGT
* * * * * *
452606 ACCCAATCTTGAAAAGAATAGAGATTGTTATGAGAATCGTTGCTTGTCTTATTTAAGGGATGTAC
131 TCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAAC
* ** *
452671 TTTGATTTTTAAGGAAAAT-AGGGCAAAGAAAAGATTTTGATACAAAAGAAAATCATCAATATCA
196 TTTGA-TTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCA
*
452735 TTTATCCTAATAAGGAG
260 TTTATCCTAATGAGGAG
452752 TGAAAGCTTA
Statistics
Matches: 13978, Mismatches: 2166, Indels: 539
0.84 0.13 0.03
Matches are distributed among these distances:
460 58 0.00
461 140 0.01
462 85 0.01
463 86 0.01
464 186 0.01
465 102 0.01
466 47 0.00
467 5 0.00
468 117 0.01
469 214 0.02
470 164 0.01
471 324 0.02
472 782 0.06
473 1428 0.10
474 2512 0.18
475 2241 0.16
476 2214 0.16
477 718 0.05
478 412 0.03
479 977 0.07
480 495 0.04
481 79 0.01
482 303 0.02
483 70 0.01
485 1 0.00
486 1 0.00
487 43 0.00
488 172 0.01
489 2 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (476 bp):
ATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAA
AAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGT
TCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAAC
TTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCAT
TTATCCTAATGAGGAGAATGTGCTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAA
TCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTT
CTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC
CTGAAAAGAATGGGGATTAGT
Found at i:440679 original size:158 final size:158
Alignment explanation
Indices: 439571--445441 Score: 816
Period size: 158 Copynumber: 37.2 Consensus size: 158
439561 AAATGGCTTG
* * *
439571 CTTGTGAAACCAAAGTATCAATATCATTTATCCTAAATAGAAGAACATGTTTATGGTGCCTAATC
1 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAAATAG-AGAACATGTTTATGGTGCCTAATC
* * * * * *
439636 CTAAAAAGAATG-GGATTAGTATGAGTATTCATGTTTGCCTTATTTAACAGAAAAACTTTGATTC
65 CTGAAAAGAATGAAGATTAGTCTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
* * *
439700 TATAAAAAACGGTGGAAAGAAAAGCCCTT
130 TATCAAAAACAGTGGAAAGAAAAGCCTTT
* * * * * * *
439729 CTTGCGACAA-CAAAGCTTCATTGTCATGTATCAT-AAT-GAAGGAA-ATGTGTTTTAGGTTCCC
1 CTTGCGA-AACCAAAGCATCAATATCATGTATCCTAAATAG-A-GAACATGT-TTAT-GGTGCCT
* * * * * * * * * * * ** *
439790 AAACTTAAAAACAATGGAGACTATTATGAG-AATCGTTGCTTCCCTAATTTAA-AGGATGC-AA-
61 AATCCTGAAAAGAATGAAGATTAGTCTGAGTATTC-ATGTTTGTCTTATTTAAGA-GA--CAAAC
* * * ***
439851 TTTGATTTTAT-AGAAAATAG-GGCAAATAAAATATTTT
122 TTTGATTCTATCA-AAAACAGTGG-AAAGAAAAGCCTTT
* * ** * * ** * ** *
439888 CATGCTAAAGAAAATCATCAATATCATATATACGGATAA-GGAGAATGTGTTTATAGTGCCTAAT
1 CTTGCGAAACCAAAGCATCAATATCATGTAT-CCTA-AATAGAGAACATGTTTATGGTGCCTAAT
* * * * * * *
439952 CAC-CAAATGAATGAAGATCATTACT-AGAATCCATGTTTGT-TTCATTT--GAGGCATGAACTT
64 C-CTGAAAAGAATGAAGATTAGT-CTGAGTATTCATGTTTGTCTT-ATTTAAGAGACA--AACTT
* ** ** *
440012 AGACTT-TA-CAAAAATGGGTGGGTA-AAATGCCTTT
124 TGA-TTCTATCAAAAA-CAGTGGAAAGAAAAGCCTTT
* * * * ** * *
440046 CTTGTGAAACCAAACCATCAATATCGTGTATCCTCAGGAGA-AGACTATGCTTATGGTGCCTAGT
1 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAAATAGAGA-AC-ATGTTTATGGTGCCTAAT
* ** * * * * * *
440110 CTTGAAAAGAATGGGGATTAGTTTCACTATTTATGTTTGTCCTATTTAAAAGACAAACTTTGATT
64 CCTGAAAAGAATGAAGATTAGTCTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
** *
440175 CTATCAAAAATGGTGGAAAGAAAAGCTTTT
129 CTATCAAAAACAGTGGAAAGAAAAGCCTTT
* * * * ** * * *
440205 CTTGCGACACCAAAGCATTAATGTCATGTATCCT-ATTGAAGAGAATGTGTTTTTGGTACCCAAT
1 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAAAT--AGAGAACATGTTTATGGTGCCTAAT
* * * * * ** *
440269 CTTGAAAAGAATGTAGATT-GT-TACGAG-AATCGATGCTTGTCTTATTTAAGGGATGAATTTTG
64 CCTGAAAAGAATGAAGATTAGTCT--GAGTATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTG
* * * *
440331 ATTTTATGAAAAATAG-GGCAAAGAAAAG-ATTT
126 ATTCTATCAAAAACAGTGG-AAAGAAAAGCCTTT
* ** * * * *
440363 CCATGC-AAAAGAAAGTCATCAATATCATTTCTCCT-AAT-GAGGA-ATGTGCTTATAGTGCCTA
1 -CTTGCGAAACCAAAG-CATCAATATCATGTATCCTAAATAGAGAACATGT--TTATGGTGCCTA
** * * * * * *
440424 ATCAC--AAAATGAACAAAGATCATTACT-AGAATCCATGTTTGTCTTATTTGAG-GCACGAACT
62 ATC-CTGAAAA-GAATGAAGATTAGT-CTGAGTATTCATGTTTGTCTTATTTAAGAG-ACAAACT
* * ** * *
440485 TAGACTT-TA-CAATAATTGATGGGAA-AAATGCCTTT
123 TTGA-TTCTATCAAAAACAG-TGGAAAGAAAAGCCTTT
* * * *
440520 CTTGTGAAACCAAAGCATCAATATCGTTTATCCTAAATAGTAGAACAAGTTTATGGTGCCTAATC
1 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAAATAG-AGAACATGTTTATGGTGCCTAATC
*
440585 CTGAAAAGAAT-AGGGATTAGTCTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
65 CTGAAAAGAATGA-AGATTAGTCTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
* *
440649 CCATCAAAAACGGTGGAAAGAAAAG-CTTT
129 CTATCAAAAACAGTGGAAAGAAAAGCCTTT
* * * * * ** * *
440678 CTTGCGACACCAAAGCATTAATGTCATGTATCCT-ATTGAAGGGAATGTGTTTTTGGTACCTAAT
1 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAAAT--AGAGAACATGTTTATGGTGCCTAAT
* * * ** *
440742 CTTGAAAAGAATGTAGATT-GT-TACGAGTA-TCGATGCTTGTCTTATTTAAGAGATGAATTTTG
64 CCTGAAAAGAATGAAGATTAGTCT--GAGTATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTG
* * * *
440804 ATTTTATGGAAAATA-AG-GCAAAGAAAAG-ATTT
126 ATTCTAT-CAAAA-ACAGTGGAAAGAAAAGCCTTT
* ** * * ** **
440836 CCATGC-AAAAGAAAGTCATCAATATCATTTCTCCT-AAT-GAGGAATGTGTTTATAATGCCTAA
1 -CTTGCGAAACCAAAG-CATCAATATCATGTATCCTAAATAGA-GAACATGTTTATGGTGCCTAA
* * * * * * *
440898 TCAC--AAAATGAATGAAGATCATTACT-AGAATCCATGTTTGTCTCATTTGAG-GCACGAACTT
63 TC-CTGAAAA-GAATGAAGATTAGT-CTGAGTATTCATGTTTGTCTTATTTAAGAG-ACAAACTT
* * * *
440959 AGACTT-TA-CAAAAATTAGTGGGAA-AAATGCCTTT
124 TGA-TTCTATCAAAAA-CAGTGGAAAGAAAAGCCTTT
* * * *
440993 CTTGCGAAACCAAAGCATCAACAACGTGTATCCTAAAGAGAAGAACATGTTTATGGTGCCTAATC
1 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAAATAG-AGAACATGTTTATGGTGCCTAATC
* ** * *
441058 CAGAAAAGAATGGGGATTAGTCTGAGTATTCATGTTTGTCCTATTTAAGTGACAAACTTTGATTC
65 CTGAAAAGAATGAAGATTAGTCTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
*
441123 TATCAAAAACGGTGGAAAGAAAAGCCTTT
130 TATCAAAAACAGTGGAAAGAAAAGCCTTT
* * * * * * *
441152 CATGCGACACCAAAGCGTCAAT-TCATGTATCCT-AATGAAAGAA-ATGTGTTTTAGGTTCCCAA
1 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAAAT-AGAGAACATGT-TTAT-GGTGCCTAA
** * * * * * * **
441214 TCCTGAAAATG-ATGGTGATTACTAC-GAG-AATCAAAGCTCGTCTTATTTAAGGGATGAACTTT
63 TCCTGAAAA-GAATGAAGATTAGT-CTGAGTATTC-ATGTTTGTCTTATTTAAGAGACAAACTTT
* ** * * *
441276 GATTATAAGAAAAATAG-GGCAAATAAAAG-ATTT
125 GATTCTATCAAAAACAGTGG-AAAGAAAAGCCTTT
** * ** * * * * * * * * * *
441309 CCAAGCAAAAGAAAATCATTAATGTCATTTAT-C-ATATCGACGAAATATGCTTATAGTTCCTAA
1 -CTTGCGAAACCAAAGCATCAATATCATGTATCCTAAATAGA-G-AACATGTTTATGGTGCCTAA
** * * * * * * *
441372 TCAC--AAAATGAATGGCGATCA-T-TAATGGAATCAATGTTTATCTCATTTAAG-GCACGAACT
63 TC-CTGAAAA-GAATGAAGATTAGTCTGA-GTATTC-ATGTTTGTCTTATTTAAGAG-ACAAACT
* ** * **
441432 TAGACTT-TA-CAAAAATTGTGGGAA-AATTGCCTTT
123 TTGA-TTCTATCAAAAACAGTGGAAAGAAAAGCCTTT
* ** ** * * *
441466 CTTACGAAACCAAAATATCAATATCCCGCATCCT-AAT-GAGAAGACTATATTTGTGGTGCCTAA
1 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAAATAGAG-A-AC-ATGTTTATGGTGCCTAA
* ** ** *
441529 TCCTGGAAAGAATGGGGATTAG--AAAG-A--C-TG--T-TCTTGTTT--GAGAC--ACTTTGAT
63 TCCTGAAAAGAATGAAGATTAGTCTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
* * * * *
441581 TCCATCAAAGACGGTGGAAAGAAAAACTTTT
128 TCTATCAAAAACAGTGGAAAGAAAAGCCTTT
* * * * * * ** ** * *
441612 CTTGCGACACCAAAGCATCAATGTCGTGTAGCCT-ACTGAACAGAATGTGTTT-TCAATACCCAA
1 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAAAT--AGAGAACATGTTTAT-GGTGCCTAA
* * * ** *
441675 TCTTGAAAAGAATGGAGATT-GT-TACGAG-AATCACTACTTGTCTTATTTAAGGGACGAAA-TT
63 TCCTGAAAAGAATGAAGATTAGTCT--GAGTATTCA-TGTTTGTCTTATTTAAGAGAC-AAACTT
* *** * * **
441736 TGATTTTAAGGAAAATAG-GGCAAATAAAAGATTTT
124 TGATTCTATCAAAAACAGTGG-AAAGAAAAGCCTTT
** *** ** * * * * ** * * *
441771 GATAATAAAGAAAATCATCAATATCATTTATCCTACAGAGGAGAATGTGCTTATAGTGCCTAATT
1 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAAATA-GAGAACATGTTTATGGTGCCTAATC
* ** * * * **
441836 AT-AAAATGAATGAAGAACATTACT-AGAATCCATGTTTGTCTTATTT--GATGCACAAACTTAA
65 CTGAAAA-GAATGAAGATTAGT-CTGAGTATTCATGTTTGTCTTATTTAAGA-G-ACAAACTTTG
** ***
441897 ACTT-TA-CAAAAATTG-GGGGGGAAAAGGCCTTT
126 A-TTCTATCAAAAACAGTGGAAAGAAAA-GCCTTT
* *
441929 CTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGATA-AGAACATGTTTATGGTGCCTAAT
1 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAA--ATAGAGAACATGTTTATGGTGCCTAAT
* ** * *
441993 CCTAAAAAGAATGGGGAGTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
64 CCTGAAAAGAATGAAGATTAGTCTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
* * * *
442058 TTCTCAAAAACGGTGGAAAGAAAAGCTTTT
129 CTATCAAAAACAGTGGAAAGAAAAGCCTTT
* * * * * * ** * * *
442088 CTTGAGACACCAAAGCATCAATGTCATGTATCC-CATTGATGGGAATTTGTTTTTGGTTCCCAAT
1 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAAAT-A-GAGAACATGTTTATGGTGCCTAAT
* * * * * * * *
442152 CTTGAAAAGAATGGAGACT-GT-T-ACGAAAATCGATGCTTGTCTTATTTAAGGGATAAACTTTG
64 CCTGAAAAGAATGAAGATTAGTCTGA-G-TATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTG
* * * * *
442214 ATTTTATGGAAAATA-AG-GCAAATAAAAG-ATTT
126 ATTCTAT-CAAAA-ACAGTGGAAAGAAAAGCCTTT
* ** ** * * ** * *
442246 CCATGAAAAAGAAAATCATCAATATCATTTATCCT-AATGAGGAGAATGTGCTTATAGTGCCTAA
1 -CTTGCGAAACCAAAGCATCAATATCATGTATCCTAAAT-A-GAGAACATGTTTATGGTGCCTAA
* * * * * *
442310 TCAC--AAAATGAATGAAGATCATTACT-AGAATCCATGTTTGTCTCATTTGAG-GCACAAACTT
63 TC-CTGAAAA-GAATGAAGATTAGT-CTGAGTATTCATGTTTGTCTTATTTAAGAG-ACAAACTT
* *** * * *
442371 AGACTT-TA-CAATAATTGGGGGGAA-AAATGCCTTT
124 TGA-TTCTATCAA-AAACAGTGGAAAGAAAAGCCTTT
* *
442405 CTTGCGAAACCAAAGCATCAATATCGTTTATCCTAAATAGTAGAACATGTTTATGGTGCCTAATC
1 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAAATAG-AGAACATGTTTATGGTGCCTAATC
* * *
442470 CTAAAAAGAAT-AGGGATTAGTCTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACATTGATT
65 CTGAAAAGAATGA-AGATTAGTCTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
* ** *
442534 CTATCGAAAATGGTGGAAAGAAAAG-TTTT
129 CTATCAAAAACAGTGGAAAGAAAAGCCTTT
* * * * * * ** * * *
442563 CTTGC-ATCACCAAACCATCAATGTCATGTATCAT-ATTGAAGGGAAGGTGTTTTTGGTACCCAA
1 CTTGCGA-AACCAAAGCATCAATATCATGTATCCTAAAT--AGAGAACATGTTTATGGTGCCTAA
* * * * * * **
442626 TCTTGAAAAGAATGTAGATT-GCTATGAG-AATCGATGCTTGTCTTATTTAAGGGATGAACTTTG
63 TCCTGAAAAGAATGAAGATTAG-TCTGAGTATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTG
* * * *
442689 ATTATAGGCAAAATA-AG-GCAAAGAAAAG-ATTT
126 ATTCTA-TCAAAA-ACAGTGGAAAGAAAAGCCTTT
* * ** * * ** * * *
442721 CCATGCAAAAGAAAATCATCAATATCATTTCCCCT-AAT-GAGGAATATGCTTATAGTGCCTAAT
1 -CTTGCGAAACCAAAGCATCAATATCATGTATCCTAAATAGA-GAACATGTTTATGGTGCCTAAT
* * * * * * ** * *
442784 AAC--AAAATGAATGAAGATCA-T-TAGTAGAATCCATGCTTGCCACATTTGAG-GTACGAACTT
64 -CCTGAAAA-GAATGAAGATTAGTCT-G-AGTATTCATGTTTGTCTTATTTAAGAG-ACAAACTT
* * ** * *
442844 AGA-CCT-T-AAAATATTTGGTGGGAA-AAATGCCTTT
124 TGATTCTATCAAAA-A--CAGTGGAAAGAAAAGCCTTT
* * * ** *
442878 CTTGCAAAACCAAAGCATCACTTTTGTGTATCCT-AATGAGAAGAACATATTTATGGTGCCTAAT
1 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAAAT-AG-AGAACATGTTTATGGTGCCTAAT
* ** * * *
442942 CCTGGAAAGAATG--G-GGA-T-T-AGTA-TGA-GTTTGTCTTGTTTAAGAGACAAACTTTGACT
64 CCTGAAAAGAATGAAGATTAGTCTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
*
442999 CTATCAAAAACAGTGGAAAGAAAAGCTTTT
129 CTATCAAAAACAGTGGAAAGAAAAGCCTTT
** * * * ** * * *
443029 CTTGCGACGCCAAAGCATCAATGTCATGCATCCTATTGATAG-GAATGTGCTTTTTTTGGTTCCC
1 CTTGCGAAACCAAAGCATCAATATCATGTATCCTA--AATAGAGAACATG---TTTATGGTGCCT
* * * * * * * **
443093 AATCTTGAAAAGAATGGAGACT-GT-TACGAG-AATCGATGCTTGTCTTATTTGAGGGATGAACT
61 AATCCTGAAAAGAATGAAGATTAGTCT--GAGTATTC-ATGTTTGTCTTATTTAAGAGACAAACT
* * * * *
443155 TTGATTTTATGGAAAATA-AG-GCAAATAAAAG-ATTT
123 TTGATTCTAT-CAAAA-ACAGTGGAAAGAAAAGCCTTT
* * ** ** * * * * * *
443190 CCATGCAAAAGAAAATTATCAGTATCATTTCTCC-GAAT-GAGGA-ATGTGCTTATAGTGCCTAA
1 -CTTGCGAAACCAAAGCATCAATATCATGTATCCTAAATAGAGAACATGT--TTATGGTGCCTAA
* * * * * * * *
443252 TCAC--AAAATGAATGAAGATCT-TTACT-AGAATCCATGTTTGTCTCA-TTCACACACGAACTT
63 TC-CTGAAAA-GAATGAAGAT-TAGT-CTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTT
** * * * *
443312 AAACTT-TA-CAAAAATTAGTGGGAA-AAATGCCTGT
124 TGA-TTCTATCAAAAA-CAGTGGAAAGAAAAGCCTTT
* * * ** *
443346 CTTGCGAAACAAAAACATCAATATCGTGTGCCCT-AATGAGAAGAACATCTTTATGGTGCCTAAT
1 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAAAT-AG-AGAACATGTTTATGGTGCCTAAT
* * *
443410 CCTAAAAAGAATGGAGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
64 CCTGAAAAGAATGAAGATTAGTCTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
** * **
443475 CTATCAAAAATGGTGGAAAG-AATGGTTTT
129 CTATCAAAAACAGTGGAAAGAAAAGCCTTT
** * * * * * ** * * *
443504 CTTATGACACCAATGCATCAATGTCATGTAT--TATATTGAAGGGAATGTGTTTTTGGTACCCAA
1 CTTGCGAAACCAAAGCATCAATATCATGTATCCTA-AAT--AGAGAACATGTTTATGGTGCCTAA
* * * * * * * * * * * * ** **
443567 TCTTGAAAAGAATGCAGATTATTAC-AAGAATTGAAGCTCGTTTTATTTAGGGGATGAACTTCAA
63 TCCTGAAAAGAATGAAGATTAGT-CTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* ** * **
443631 TTTTAAGGAAAATA-AG-GCAAAGAAAAGATTTT
127 TTCT-ATCAAAA-ACAGTGGAAAGAAAAGCCTTT
* * * * ** * *
443663 CATGCAGAAGA--AAATCATCAATATCATTTCTCCT-AATACG-GAATGTGCTTATAGTGCCTAA
1 CTTGC-GAA-ACCAAAGCATCAATATCATGTATCCTAAATA-GAGAACATGTTTATGGTGCCTAA
* * * * ** * * * *
443724 TCAC--AAAATGAATGAGGGTCATTACT-AAAATCCATGTTTCTCTCATTT--GAGGCATGAACT
63 TC-CTGAAAA-GAATGAAGATTAGT-CTGAGTATTCATGTTTGTCTTATTTAAGAGACA--AACT
* * * * * * **
443784 TAGA--C-ATTACAAA-AGTTGGTAGGAAAAATACCCAT
123 TTGATTCTATCAAAAACAG-TGGAAAG-AAAA-GCCTTT
* ***
443819 CTTGCGAAACCAAAACATCAATATTGCGTATCCT-AAT-GAGAAGACAATGTTTATGGTGCCTAA
1 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAAATAGAG-A-AC-ATGTTTATGGTGCCTAA
** * * ** * * *
443882 TCCTGAAAAGAATGGGGTTTAGTTTGACCATTCATCTTTGTCTTATTTAAGAAATAAACTTTGAT
63 TCCTGAAAAGAATGAAGATTAGTCTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
** * * * *
443947 TCCGTCAAAAACGGTGGAAATAAAGGCTTTT
128 TCTATCAAAAACAGTGGAAAGAAAAGCCTTT
* * * * ** * * *
443978 CTTGC-AACACGAAAGCATCAATGTCATGTATCCT-ATTGATGGGAATGTGTTTTTGGTTCCCAA
1 CTTGCGAA-ACCAAAGCATCAATATCATGTATCCTAAAT-A-GAGAACATGTTTATGGTGCCTAA
** * * * * * * * *
444041 TATTGAAACGAGTGGAGACTCTA-AC-GAG-AATCGATGCTTGTCTTATTTAAGGGACGAACTTT
63 TCCTGAAAAGAATGAAGA-T-TAGTCTGAGTATTC-ATGTTTGTCTTATTTAAGAGACAAACTTT
* * * *
444103 TATTTTATGGAAAATA-AG-GGCAAAGAAAAG-ATTCT
125 GATTCTAT-CAAAA-ACAGTGG-AAAGAAAAGCCTT-T
* ** * * * ** * *
444138 CATGCGAAAAAAAAATCATCAAAATCAT-TAATCCT-ATTGAGGAGAATGTGCTTATAGTGCCTA
1 CTTGCG-AAACCAAAGCATCAATATCATGT-ATCCTAAAT-A-GAGAACATGTTTATGGTGCCTA
* * * * * * **
444201 ATCAC--AAAATGAATGAAGATCATTACT-AGAAAATCTAGGTTTGTCTCATTT--GACGTATGA
62 ATC-CTGAAAA-GAATGAAGATTAGT-CTGAG-TATTC-ATGTTTGTCTTATTTAAGA-G-ACAA
** ** *
444261 ACTTAAACTT-TA-CAAAAATTGGTGGGAA-AAAAGCCTTT
120 ACTTTGA-TTCTATCAAAAA-CAGTGGAAAGAAAAGCCTTT
* * *
444299 CTTGCAAAACCAAAACATCAATATCGTGTA-CCT-AATGAGAAGAACATGTTTATGGTGCCTAAT
1 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAAAT-AG-AGAACATGTTTATGGTGCCTAAT
* * ** * * * *
444362 CCAGAAAACAATGGGGATTAGTATCAGTATTCATGTTTGTCTTATTTAAGAGACAAGCTTTAATT
64 CCTGAAAAGAATGAAGATTAGTCTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
* * ** *
444427 CCATGAAAAATGGTGGAAAGAAAAGCTTTT
129 CTATCAAAAACAGTGGAAAGAAAAGCCTTT
* * * * ** * * *
444457 CTTGCGACACCAAAGCATCAATATCAAGTATCCT-ATTGAAGGGAATGTGTTTTTGGTACCCAAT
1 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAAAT--AGAGAACATGTTTATGGTGCCTAAT
* * * * * * * * * * *
444521 CTTGAATAGAAAGTACATT-GT-TGCAAG-AATCGATGCTAGTCTTATTTAGGGGGTC-AACTTT
64 CCTGAAAAGAATGAAGATTAGTCTG--AGTATTC-ATGTTTGTCTTATTTA-AGAGACAAACTTT
* * * *
444582 GATT-TAATGGAAAATA-AG-GCAAATAAAAG-ATTT
125 GATTCT-AT-CAAAA-ACAGTGGAAAGAAAAGCCTTT
* * ** * * * * *
444615 ACATGCAAAAGAAAATCATCAATATCATTTCTCCT-AAT-GAGGA-ATGTGCTTATAGTGCCTAA
1 -CTTGCGAAACCAAAGCATCAATATCATGTATCCTAAATAGAGAACATGT--TTATGGTGCCTAA
* * * * * * * *
444677 TCAC--AAAATGAATGAAGATCATTACT-AGGATCCATGTTTGTCTCATTTGAG-GTGCGAACTT
63 TC-CTGAAAA-GAATGAAGATTAGT-CTGAGTATTCATGTTTGTCTTATTTAAGAG-ACAAACTT
* *** * **
444738 AGACTT-TA-CAACAATTGGTGGGAA-AAGTGCCTTT
124 TGA-TTCTATCAA-AAACAGTGGAAAGAAAAGCCTTT
* * * ***
444772 CTTGCGAAGCCAAAGCATCAATATCGTGTATCCCAAATAGGAGAACATGCGCATGGTGCCTAATC
1 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAAATA-GAGAACATGTTTATGGTGCCTAATC
* * * * * *
444837 CT-AAGAAGAAT-AGGGATTAGTATGCGTATTTATGTTTGTCTTAATTAAGAGACGAACTTTGAT
65 CTGAA-AAGAATGA-AGATTAGTCTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
* **
444900 TCTATGAAAAATGGTGGAAA-AAAAGCCTTT
128 TCTATCAAAAACAGTGGAAAGAAAAGCCTTT
* * * * * * *
444930 CTAGTGACACCAAAGCATCAATGTCATGTATCCT--ATCGAAGGAA-ATGTGTTTAAGGTTCCTA
1 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAAATAG-A-GAACA--TGTTTATGGTGCCTA
* * * ** * * * * * ** *
444992 ATCCTAAAAATAATGGAGCCTATTATGAG-AATCAATGCTTGTCTTATTTAAGGGATGAACATTG
62 ATCCTGAAAAGAATGAAGATTAGTCTGAGTATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTG
* * * * *
445056 ATTTTATGGAAAATAAAGT--AAAGAAATG-TTTT
126 ATTCTAT-CAAAA-ACAGTGGAAAGAAAAGCCTTT
* ** ** * * * ** * *
445088 CCATGTAAAAGAAAATCATCAATTTCATTTATCCT-AATGAGGAGAATGTGCTTATAGTGCCTAA
1 -CTTGCGAAACCAAAGCATCAATATCATGTATCCTAAAT-A-GAGAACATGTTTATGGTGCCTAA
** * * * * *
445152 TCAC--AAAATGAATGAAGAACATTTCT-AGAATCCATGTTTATCTCT-TTT--GAGGCATGAAC
63 TC-CTGAAAA-GAATGAAGATTA-GTCTGAGTATTCATGTTTGTCT-TATTTAAGAGACA--AAC
* *** * *
445211 TTAGACTT-TA-CAAAAGTTGGTGGAAAAAAAAGCCATT
122 TTTGA-TTCTATCAAAA-ACAGTGGAAAGAAAAGCCTTT
* ***
445248 CTTGCGAAACCAAAACATCAATATGGCGTATCCT-AAT-GAGCAGACTATGTTTATGGTGCCTAA
1 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAAATAGAG-A-AC-ATGTTTATGGTGCCTAA
* ** * ** * *
445311 TCTTGAAAAGAATGGGGATT-GATTTGACCATACATGTTTGTCTAATTTAAGAGACAAACTTTGA
63 TCCTGAAAAGAATGAAGATTAG-TCTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* * *
445375 TTCCATCAAAAAC-GATGGAAAAAAAAGCTTTT
127 TTCTATCAAAAACAG-TGGAAAGAAAAGCCTTT
* * *
445407 CTTGC-AACACGAAAGCATGAATGTCATGTATCCTA
1 CTTGCGAA-ACCAAAGCATCAATATCATGTATCCTA
445442 TTGATGGGAA
Statistics
Matches: 4019, Mismatches: 1248, Indels: 890
0.65 0.20 0.14
Matches are distributed among these distances:
143 2 0.00
144 7 0.00
145 13 0.00
146 62 0.02
147 2 0.00
148 10 0.00
149 3 0.00
150 26 0.01
151 44 0.01
152 9 0.00
153 18 0.00
154 36 0.01
155 73 0.02
156 256 0.06
157 551 0.14
158 1349 0.34
159 1178 0.29
160 168 0.04
161 101 0.03
162 74 0.02
163 34 0.01
164 3 0.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (158 bp):
CTTGCGAAACCAAAGCATCAATATCATGTATCCTAAATAGAGAACATGTTTATGGTGCCTAATCC
TGAAAAGAATGAAGATTAGTCTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
ATCAAAAACAGTGGAAAGAAAAGCCTTT
Found at i:453519 original size:13 final size:13
Alignment explanation
Indices: 453501--453526 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
453491 CAATTTTTTG
453501 TGTATCGATACAT
1 TGTATCGATACAT
453514 TGTATCGATACAT
1 TGTATCGATACAT
453527 ACTTGCTATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:453610 original size:20 final size:20
Alignment explanation
Indices: 453565--453637 Score: 76
Period size: 20 Copynumber: 3.6 Consensus size: 20
453555 CTGCCAAGAA
***
453565 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGAATC
453586 ATGTATCGATACATTGCAA-C
1 ATGTATCGATACATTG-AATC
* *
453606 ATGTATCGATACTTTGAATT
1 ATGTATCGATACATTGAATC
453626 ATGTATCGATAC
1 ATGTATCGATAC
453638 TTTTAAGGGT
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
19 2 0.04
20 29 0.64
21 14 0.31
ACGTcount: A:0.30, C:0.16, G:0.14, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATTGAATC
Found at i:453638 original size:20 final size:20
Alignment explanation
Indices: 453585--453640 Score: 78
Period size: 20 Copynumber: 2.8 Consensus size: 20
453575 ACATCTTTTT
*
453585 CATGTATCGATACATTGCAA
1 CATGTATCGATACTTTGCAA
453605 CATGTATCGATACTTTG-AA
1 CATGTATCGATACTTTGCAA
*
453624 TTATGTATCGATACTTT
1 -CATGTATCGATACTTT
453641 TAAGGGTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
19 2 0.06
20 31 0.94
ACGTcount: A:0.30, C:0.16, G:0.14, T:0.39
Consensus pattern (20 bp):
CATGTATCGATACTTTGCAA
Found at i:454280 original size:20 final size:20
Alignment explanation
Indices: 454255--454334 Score: 128
Period size: 20 Copynumber: 4.0 Consensus size: 20
454245 TTTATTAATA
454255 ATTCTCCCCCTTAATCAAGT
1 ATTCTCCCCCTTAATCAAGT
454275 ATTCTCCCCCTTAATCAAGT
1 ATTCTCCCCCTTAATCAAGT
*
454295 ATTCTCCCCCTT-ATTAA-T
1 ATTCTCCCCCTTAATCAAGT
454313 AATTCTCCCCCTTAATCAAGT
1 -ATTCTCCCCCTTAATCAAGT
454334 A
1 A
454335 ATTCATATCA
Statistics
Matches: 55, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
18 1 0.02
19 16 0.29
20 37 0.67
21 1 0.02
ACGTcount: A:0.26, C:0.34, G:0.04, T:0.36
Consensus pattern (20 bp):
ATTCTCCCCCTTAATCAAGT
Found at i:454326 original size:39 final size:40
Alignment explanation
Indices: 454255--454334 Score: 128
Period size: 39 Copynumber: 2.0 Consensus size: 40
454245 TTTATTAATA
454255 ATTCTCCCCCTTAATCAAGTATTCTCCCCCTTAATCAAGT
1 ATTCTCCCCCTTAATCAAGTATTCTCCCCCTTAATCAAGT
*
454295 ATTCTCCCCCTT-ATTAA-TAATTCTCCCCCTTAATCAAGT
1 ATTCTCCCCCTTAATCAAGT-ATTCTCCCCCTTAATCAAGT
454334 A
1 A
454335 ATTCATATCA
Statistics
Matches: 38, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
38 1 0.03
39 25 0.66
40 12 0.32
ACGTcount: A:0.26, C:0.34, G:0.04, T:0.36
Consensus pattern (40 bp):
ATTCTCCCCCTTAATCAAGTATTCTCCCCCTTAATCAAGT
Found at i:456160 original size:13 final size:13
Alignment explanation
Indices: 456142--456167 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
456132 ATAATCACCC
456142 TGTATCGATACAA
1 TGTATCGATACAA
456155 TGTATCGATACAA
1 TGTATCGATACAA
456168 AGAAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:458266 original size:15 final size:15
Alignment explanation
Indices: 458246--458276 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
458236 ATTTCGTTTG
*
458246 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
458261 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
458276 G
1 G
458277 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:462357 original size:13 final size:13
Alignment explanation
Indices: 462339--462364 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
462329 TAATTTTTTG
462339 TGTATCGATACAT
1 TGTATCGATACAT
462352 TGTATCGATACAT
1 TGTATCGATACAT
462365 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:465309 original size:475 final size:477
Alignment explanation
Indices: 462738--472727 Score: 12018
Period size: 474 Copynumber: 21.0 Consensus size: 477
462728 CAAAACCAAG
** * *
462738 ATCCTAACAAGGAGAATGTG-TGTACAGTACCTAATCACAAAATGAATGAAGATCATTACTAGAA
1 ATCCTAATGAGGAGAATGTGCT-TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAA
* * * * * * *
462802 T-TAGTGTTTGTCTCATTTGATGCACGAACCTAAACTTTATAAAAATTGGTAGGAAAAATGCCTT
65 TCCA-TGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTT
* * *
462866 TCTTGCGAAACCAAAACATTAATATCGTGTATCCTAATAAGAAGGACT-TGTTTATGGTGCCTTA
129 TCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAA-GACTATGTTTATGGTGCCTAA
* * * * *
462930 TCTTGAAAAGAATGGGCATTAGTACGTGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTAAT
193 TCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
* * * *
462995 TCTATCAAAAACGGTGGAAAGAAAAGCTTTCCTTGCGACACAAAAGCATCAATGTCATATATCTT
258 TCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT
* * * * *
463060 ATTGAAGGGACTCTGTTTTTGGCT-CCCAATC-TCAAAAGCAAAGGAGATTGTTACGAGAATCGA
323 ATTGAAGGGAATGTGTTTTTGG-TACCCAATCTTGAAAAG-AATGGAGACTGTTACGAGAATCGA
* * * *
463123 TACTTGTCTTATAT-AGGAGATGAACTTCGATTTTATGGAAAATAA-GGCAAAGAAAAGATTTTC
386 TGCTTGTCTTATTTAAGG-GATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCC
*
463186 ATGCAGAAGAAAATCATCAATATCATTT
450 ATGCAAAAGAAAATCATCAATATCATTT
* * * *
463214 CTCCTAAT-AAG-GATTGTGCTTATAGTGCCTAATCACAAATTGAATGAAGATCATTACTAGAAT
1 ATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* * * * * * *
463277 CCATATTTGTCTCATTTAAGGCACGGACTTAGACTTTACAATAATTGGTGGGAAAAATTCCTTGC
66 CCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTC
* ** * **
463342 TTGCAAAACCAAAGTATCAATATCGTTTATCCTAAAT-AGAAGAAC-ATGTTTATGGTGTGTAAT
131 TTGCGAAACCAAAACATCAATATCGTGTATCCT-AATGAGAAG-ACTATGTTTATGGTGCCTAAT
* * *
463405 CCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGCCTTA-TTAACAGACAGACTTTGATT
194 CCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
* * * * *
463469 CTATCAAAAACGGTGGAAAGAAAAGCCTTTATTGCGACACCAAAGCTTCAATGTCATATATCATA
259 CTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTA
* * * * * * * * *
463534 ATGAAGGAAATGTGTTTTAGGTTCCCAAACCT-AACAACAATGTAGACTGTTACGAGAATCGTTG
324 TTGAAGGGAATGTGTTTTTGGTACCCAATCTTGAA-AAGAATGGAGACTGTTACGAGAATCGATG
* * * * *
463598 CTTCTCTTATTTAAGGGATGTAA-TTTGATTTTATAGAAAAT-AGGGCATATAAAAGATTTCCAC
388 CTTGTCTTATTTAAGGGATG-AACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCAT
*
463661 GCTAAAGAAAATCATCAATATCATTT
452 GCAAAAGAAAATCATCAATATCATTT
* *
463687 ATCC-AGATAAGGAGAATGTGTTTATAGTGCCTAATCACCAAAA-GAATGAAGATCATTACTAGA
1 ATCCTA-ATGAGGAGAATGTGCTTATAGTGCCTAATCA-CAAAATGAATGAAGATCATTACTAGA
* * * *
463750 ATCCATGCTTGTTTCATTTGAGGCATGAGCTTAAACTTTACAAAAATTGGTGGGTAAAAATGCCT
64 ATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGG-AAAAATGCCT
* * *
463815 TTCTTGCGAAACCAAAACATTAATATC-TCGTATCCTAATGAGAAGACTATGTTTATAGTGTCTA
128 TTCTTGCGAAACCAAAACATCAATATCGT-GTATCCTAATGAGAAGACTATGTTTATGGTGCCTA
* * * *
463879 ATCCTGAAAAGAATGAGGATTAGTTTGACTATTCATGTTTGTCCTATTTAAGAGACAAACTTTGA
192 ATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* * *
463944 TTCCATCAAAAACGGTGGAAAGAGAAGCTTTTCTTGCGACACCAAAGCATTAATGTCATGTATCC
257 TTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCC
* * * *
464009 TATTAAAGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAATGTAGATTGTTACAAGAATCGAT
322 TATTGAAGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGAT
*
464074 GCTTGTCTTATTTAAGGGATGAATTTTGATTTTATGGAAAATAA-GGCAAAGAAAAGATTTCCAT
387 GCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCAT
* * *
464138 GCAAAGGAAAGTCATCAATATCATTC
452 GCAAAAGAAAATCATCAATATCATTT
* * *
464164 CTCCTAATGA-G-GAATGTGCTTATAGTGCCTAATCACAAAATTAATGAAGATCGTTACTAGAAT
1 ATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* * * *
464227 CCATGTTTGTCTCATTTGAAGCACGAACTTAGACTTTACAATAATAGGTGGGAAAAATGCC-TTC
66 CCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTC
* * *
464291 ATTGCGAAACCAAAGCATCAATATCATTTATCCTAAATCGTAG-A-AC-ATGTTTATGGTGCCTA
131 -TTGCGAAACCAAAACATCAATATCGTGTATCCT-AAT-G-AGAAGACTATGTTTATGGTGCCTA
* *
464353 ATCCTGAAAAGAATAGGGATTAGTCTGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
192 ATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
** * * * * * * *
464418 TTCTATCAAAAACTATGGAAAGCAAAGCCTTTCTTGCAACACCAAAGCTTTAATGTTAGGTATCC
257 TTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCC
* * * * * * *
464483 TAATGAAGGAAATGTGTTTTAGGTTCCCAATCCTAAAAATAATGGAGACTGTTACGAGAATCGAT
322 TATTGAAGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGAT
* * * * * *
464548 GCTTGTCTTATTTAATGGATTAAATATGATTTTGTAGAAAAT-AGGGCAAAGAAAAGATTTCCAT
387 GCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCAT
* *
464612 GCAAAAGGAAATCATCAATATCACTT
452 GCAAAAGAAAATCATCAATATCATTT
** * * *
464638 ATCCTGCTGGGGAGAATGTGCTTATAGTGCCTAATCATAAAATGAATGAAGATCATTACTATAAT
1 ATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* * * * *
464703 CCATGTTTGTTTCATTTGAGGCATGAACTTAGAGTTTACAAAAATTAGTGGGTAAAATGCCATTC
66 CCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTC
* *
464768 TTGCGAAACCAAAATATCAATATCGTGTATCCTAATGAGAAGACTATATTTATGGTGCCTAATCC
131 TTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCC
* * * * *
464833 TGAAGAGAACGGGGATTAGTTTGACTTTTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT-T
196 TGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
* * *
464897 CCTCAAAAACGGTGAAAAGAAAAGCTTTTTTTGCGACACCAAAGCATCAATGTCATGTATCCTAT
261 -ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAT
* * * *
464962 TGATGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAGTGGAGACTGTTACAAGAA-CTAATGC
325 TGAAGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATC-GATGC
* *
465026 TTGTCTTATTTAAGAGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCAAGC
389 TTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCATGC
* *
465091 -AAA-AAAACCATCAATATCTTTT
454 AAAAGAAAATCATCAATATCATTT
* * * *
465113 ATCGTAGTGAGGACAATGTGCTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAAT
1 ATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* * * * * *
465178 CCATGTTAGTCTCGTTTGAGACACGAACTTAGACTTTTCAAAAATTAGTGGGAAAAATGCCTTTC
66 CCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTC
* * *
465243 TTGCGAAACAAAAACATCAATATCATGTATCCTAATGAGAAGACTATGTTTAGGGTGCCTAATCC
131 TTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCC
*
465308 TGAAAAGAATGGGGATTAGTATG-GCTATTCGTGTTTGTCTTATTTAAGAGACAAACTTTGATTC
196 TGAAAAGAATGGGGATTAGTATGAG-TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
* * * * * * * *
465372 CATCAACAATGGTGGAATGAAAAGCTTTTAC-AGCAACACCAAAGTATCATTGTCATGTATCCTA
260 TATCAAAAACGGTGGAAAGAAAAGCTTTT-CTTGCGACACCAAAGCATCAATGTCATGTATCCTA
* * * **
465436 TTGAA-TGAGATGTGTTTTTGGTACCCAATCTTGAAAAGAATGTAGATTGTTGTGAGAATCGATG
324 TTGAAGGGA-ATGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATG
* * * *
465500 CTTGCCTTATTTAAGGGACGAACTTTGATTTTATGGAAAATGA-GGCAAAGAAAAGATTTCCACG
388 CTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCATG
*
465564 CAAAAGAAAATCAACAATATCATTT
453 CAAAAGAAAATCATCAATATCATTT
* * * * * *
465589 CTCCTACT-AAG-GAATGTGGTTATAGTGCCTAATCATAAAATGAATGATGATCATTACTAGAAT
1 ATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* * * * * *
465652 CCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAATAATCGGTGGGAAAAATACCTTGC
66 CCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTC
* ** * *
465717 TTGTGAAACCAAAGTATTAATATCGTGTATCCTAAAT-AGAAGAAC-ATGTTTATGGTGCCTATT
131 TTGCGAAACCAAAACATCAATATCGTGTATCCT-AATGAGAAG-ACTATGTTTATGGTGCCTAAT
* * * *
465780 CCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGCCTTATTTATGTGACAAACTATGATT
194 CCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
* * * *
465845 CGATC--AAACGGTGGAAAGAAAAGCTTTCCATGCGACACCAAAGCATCAATGTCATGTATCATA
259 CTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTA
* * * * * * *
465908 ATGAAGGAAATGTGTTTTAGGTTCCCAATCCTAAAAATG-ATGGAGACTGCTACGAGAATCGATG
324 TTGAAGGGAATGTGTTTTTGGTACCCAATCTTGAAAA-GAATGGAGACTGTTACGAGAATCGATG
** ** * * * * *
465972 CTCATCTTATTTAAGGGATGAACTTTGATAATAAGAAAAAT-AGGGCAAATAAAAGATTTTCAAG
388 CTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCATG
*
466036 CAAAAGAAAATCATAAATATCATTT
453 CAAAAGAAAATCATCAATATCATTT
* * * *
466061 ATCCTAACGAGGAGAATGTGCTTATAGCGCCTAATCGCAAAATGAATGACA-ATCATTAATAGAA
1 ATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGA-AGATCATTACTAGAA
* * * *
466125 TCCATGTTTGTCCCATTTGAGGCATGAACTTAGACTTTGCAAAAATTGGTGGG-AAAAGGCCTCT
65 TCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTT
* * * *
466189 CTTGCAAAACCAAAACATCAATATCGCGTATCCT-ATGAGAAAACTATGTTTACGGTGCCTAATC
130 CTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC
* * * * * * *
466253 CTAAAAAAAATAGGGAATAGAATGAGTATTCAAGTTTGTCTTATTTAAGAGACAAACCTTGATTC
195 CTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
** * * * * *
466318 TATCAAAAACTTTGGAAAGAAAAGCCTTTCTTGCAACACCAAAGCTTTAATGTCATGTATCCTAA
260 TATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAT
* * * * * * *
466383 TGAAAGGAAATGTGTTTTAGGTTCCCAATCCTAAAAACAATAGAGACTGTTATC-AGAATCGATG
325 TG-AAGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGACTGTTA-CGAGAATCGATG
* * *
466447 CTTGTCTTATTTAAGGGATGAAAC-TTGATTTTATAGAAAAT-AGGGCAAA-AAAAAATTTTCAT
388 CTTGTCTTATTTAAGGGATG-AACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCAT
* *
466509 GCAGAAGAAAATCATCAACATCATTT
452 GCAAAAGAAAATCATCAATATCATTT
* * *
466535 ATCCTAATAAGGAGAATGTGCTTATAGTGCCTAATCACAAAAGGAAAGAAGATCATTACTAGAAA
1 ATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAG--A
* * * * * * **
466600 ATCTAGGTTTGCCTCATTTGATGCACGAACTTA-ACTTTAGAAAAATTGGTGCAAAAAATGCCTT
64 ATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTT
* * * **
466664 TCTTGCGAAACCAAAACATCAATA-CATGCATCCTAATGAGAATACTATGTTTATGGTGCAGAAT
129 TCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT
* * * *
466728 CCTGAAAA-AAGTGGGGAATAGCATGAGTATTCAAGTTTGTCTTATTTAAGAGACAAACTCTGAT
194 CCTGAAAAGAA-TGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
* * * * * * *
466792 TCCATGAAAAACTGTGCAAAGAAAAGCTTTT-TATGCAACACTAAAGCGTCAATGTCATGTATCC
258 TCTATCAAAAACGGTGGAAAGAAAAGCTTTTCT-TGCGACACCAAAGCATCAATGTCATGTATCC
** * * * * * * **
466856 TAAAGAAAGAAATGTGTTTTAGGTTCCCAATCTTGAAAATG-ATGGACACTGCTGTGAGAATCGA
322 TATTGAAGGGAATGTGTTTTTGGTACCCAATCTTGAAAA-GAATGGAGACTGTTACGAGAATCGA
** * * * *
466920 TGCTCATCTTATTTAACGGATGAACATTGGTTTTATGGAAAAT-AGGGCAAAGAAAAGATTTCAA
386 TGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCA
466984 TGCAAAAGAAAATCATCAATATCATTT
451 TGCAAAAGAAAATCATCAATATCATTT
* * * *
467011 CTTCTAATGA-G-GAATGTGCTTATAATGCCTAATCACAAAATTAATGAAGATCATTACTAGAAT
1 ATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* * *
467074 CCATGTTTGTCCCATTTGTGGCATGAACTTAGACTTTACAAAAAAATGGTGGGAAAAATGCCTTT
66 CCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTAC-AAAAATTGGTGGGAAAAATGCCTTT
* *
467139 CTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAATACTATGTTCATGGTG-CTGAAT
130 CTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCT-AAT
* * * * *
467203 CTTGAAAAAAATGGGGAATAGAATGAGTATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATT
194 CCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
* * * *
467268 CTATCAAAAAAAGGTGGACAGAAAAGCTTTCCTTACGACACCAAAGCATCAATGTCATGTATCCT
259 CTATC-AAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT
* * * ** * * * *
467333 ACTGAAGGGACTATGTTTTTGGCT-CCCAATCTAAAAAACAAAGGAGATTGTTACGAGAATCAAT
323 ATTGAAGGGAATGTGTTTTTGG-TACCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGAT
* * * * * *
467397 GCTTATCTTATTTAGGGGATAAACTTCGATTTTATGGAAAATAA-GGCAAAGAAAAGATTTTCAG
387 GCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCAT
*
467461 GCAGAAGAAAATCATCAATATCATTT
452 GCAAAAGAAAATCATCAATATCATTT
* * * *
467487 CTCCTAAT-AAG-GAATGTGCTTATAGTACCTAATTACAAAATGAATGAAGATCATTACTAGAAT
1 ATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
*
467550 CCATGTTTGTCCCATTTGAGGCATGAACTTAGACTTTACTAAAAA-TGGTGGGAAAAATGCCTTT
66 CCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTAC-AAAAATTGGTGGGAAAAATGCCTTT
* *
467614 CTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATGTTCATGGTGCCGAATC
130 CTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC
* * * * *
467679 CTGAAAAAAATGGGGAATAGAATGAGTATTCAAGTTTGTCTTATTTAAGGGACAAACTTTGATTC
195 CTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
* * * * * *
467744 TATCAAAAAAGGTGAAAAGAAAAGCTTTCCTTACGA-ACCAAAGCATCAATGTCACGTATCCTAC
260 TATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAT
* * ** * * * *
467808 TGAAGGGACTATGTTTTTGGCT-CCCAATCTAAAAAACAAAGGAGATTGTTACGAGAATCAATGC
325 TGAAGGGAATGTGTTTTTGG-TACCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGC
* * * * *
467872 TTTTCTTATTTAGGGGATAAACTTTGATTTTATGGAAAATAA-GGCAAAGAAAAGATTTTCAGGC
389 TTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCATGC
*
467936 AGAAGAAAATCATCAATATCATTT
454 AAAAGAAAATCATCAATATCATTT
* *
467960 CTCCTAAT-AAG-GAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
1 ATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* *
468023 CCATGTTTGTTTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTATC
66 CCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTC
* **
468088 TTGCAAAACCAAAACATCAATATCGCATATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCC
131 TTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCC
* * * ** *
468153 TAAAAAGATTGGGGATTAGTTTGACCATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATT-T
196 TGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
* * * * * *
468217 CATCAAAACATGATGGAAATAAAGGCTTTTCTT-CTGACACGAAAGCATCAATGTCAAGTAT-CT
261 -ATCAAAA-ACGGTGGAAAGAAAAGCTTTTCTTGC-GACACCAAAGCATCAATGTCATGTATCCT
* * * * * * * *
468280 GATTGATGGGAATGTGTTTTTGGTTCCCAACCTTGAGAAGAGTGGAGACTCTAACGAGAATCAAT
323 -ATTGAAGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGAT
* * * * *
468345 GCTGGCCTTATTTAAGGGATAAACTTTGATTTTATGGAAAATATGGGCAAAGAAAAGATTTCAAT
387 GCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCAT
* *
468410 GCAAAAGAAAATCATCAAAATCATTA
452 GCAAAAGAAAATCATCAATATCATTT
* * * * *
468436 ATCCTATTGAGGAGAATATGCTTATAGCGCCTAATCACAAAAAGAAAGAAGATCATTACTAGAAA
1 ATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAG--A
* * * * * * **
468501 ATCTAGGTTTGCCTCATTTGATGC-TCGAACTTA-ACTTTAGAAAAATAGGTGCAAAAAATGCCT
64 ATCCATGTTTGTCTCATTTGAGGCAT-GAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCT
468564 TTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGAAC-ATGTTTATGGTGCCTA
128 TTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAG-ACTATGTTTATGGTGCCTA
** * *
468628 ATCCAAAAAAGAAT-GGGATTAGTATGAGCATTCATGTTTGTCTTATTTAAGAGATAAACTTTGA
192 ATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
468692 TTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCC
257 TTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCC
* * * * * *
468757 TACTGAAGGGAATGTGTTTTTGGTACCCAATCTTGAATAGAATGTACATTGTT-CAAGAATCGAT
322 TATTGAAGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGAT
* * * *
468821 GCTAGTCTTATTTAAGGGGTCAACTTTGATTTTATGGAAAATAA-GGCAAAGAAAAAATTTCCAT
387 GCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCAT
*
468885 GCAAAAGAAAGTCATCAATATCATTT
452 GCAAAAGAAAATCATCAATATCATTT
* *
468911 CTCCTAATGA-G-GAATGTGCTTATAGTGACTAATCACAAAATGAATGAAGATCATTACTAGAAT
1 ATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* * * * *
468974 CCATGATTGTCTCATTTAAGGCATGAACTTAGCCTTTACAACAATTGGTGAGAAAAATGCCTTTC
66 CCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTC
* * ** *
469039 TTGCGAAGCCAAAGCATCAATATCGTGTATCCTAAAAAGAAAAAC-ATGTTTATGGTGCCTAATC
131 TTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAG-AAGACTATGTTTATGGTGCCTAATC
* * *
469103 CTGAGAAGAATGGGGATTAGTATGGGTATTCATGTTTGTCTCATTTAAGAGACAAACTTTGATTC
195 CTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
* * * * * *
469168 TATCAAAAATGGTGGAAAAAAAAAAGCCTTTCTAGTGACACCAAAGCATCAATGTCTTGTATCCT
260 TATCAAAAACGGTGG--AAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT
* * * ** * * * * *
469233 ATCGAAGGAAATGTGTTTTAGGTTTCTAATCCTAAAAACAATGGAGACTGTTATGAGAATCGATG
323 ATTGAAGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATG
* * ** * *
469298 CTTGTCTCATTTAAGGGATGAACATTT-ATTTCATGGAAAAT-AGGGTGAAGAAATGATTTTCAT
388 CTTGTCTTATTTAAGGGATGAAC-TTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCAT
*
469361 GCAAAAGAAAATCATCAATATCATAT
452 GCAAAAGAAAATCATCAATATCATTT
*
469387 ATCC---T-------A-----TTA-AG-G-CTAATTACAAAATGAATGAAGATCATTACTAGAAT
1 ATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* ** *
469434 ACATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAACGTTGGTGGTAAAAATGCCTTTC
66 CCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTC
* * * * * **
469499 CTGCGAAACCAAAACATCAATATCGCGTATTCTAATGGGAAGACTATGTTTATAGTAACTAATCC
131 TTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCC
* * * *
469564 TGAAAAGAATGGGGATTAGTTTG-GCCATACATGTTTGTCTTATTTAAAAGACAAACTTTGATTC
196 TGAAAAGAATGGGGATTAGTATGAG-TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
* * *
469628 TATCAAAAACGGTGGAAAGAAAAGCTTTTCTT-CTGACACTAAAGCATCAATATCGTGTATCCTA
260 TATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGC-GACACCAAAGCATCAATGTCATGTATCCTA
* * *
469692 TTGAAGGAAATTTGTTTTTGGTACCGAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGC
324 TTGAAGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGC
*
469757 TTGCCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCTAGGC
389 TTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTC----C
*
469822 AAAGAAAAGATTTCCAGGAAAAAGAAAATCATCAATATCATTT
450 ---------A--T----GCAAAAGAAAATCATCAATATCATTT
* * *
469865 ATCATAATGAGGAGAATGTGCTTATAGTGCCTAATTACAAAATGAATGAAGATCATTACTACAAT
1 ATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* * ** *
469930 CCATGTTTGTCTCATTTGATGCATGAACTTAAACTTTACAAAAATTGG-GCTAAAAAATGACTTT
66 CCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTG-GGAAAAATGCCTTT
*
469994 CTTGCGAAACCAAAACATCAATATCATGTATCCTAATGAGAAGAACT-TGTTTATGGTGCCTAAT
130 CTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAG-ACTATGTTTATGGTGCCTAAT
* * * * * *
470058 CTTGAAAAGAATGAGGATTAATATGAGTACTCATGTTTGTCTTATTTAAGAGACAAGCCTTGATT
194 CCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
*
470123 CTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTATCCTA
259 CTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTA
* *
470188 TTGAAGGGACA-GTGTTTTTGGCT-CCCAATCTTGAAAAGAATGGAGATTGCTACGAGAATCGAT
324 TTGAAGGGA-ATGTGTTTTTGG-TACCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGAT
* * * * * *
470251 GCTTGCCTTCTTTACGGGATAAACTTTGATTTTCA-AGAAAATAA-TGCAAAGAAAAGATTTCCA
387 GCTTGTCTTATTTAAGGGATGAACTTTGATTTT-ATGGAAAATAAGGGCAAAGAAAAGATTTCCA
*
470314 TGCAAAAG-AAATCATCAATATCATTA
451 TGCAAAAGAAAATCATCAATATCATTT
* *
470340 ATCCTAATAAGG-GGATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
1 ATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* * * * *
470404 CCATGTTTATCTTATTTGAGGCATGAACTTAGACTTTGCAAAAATTGATGCGAAAAATGCCTTTC
66 CCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTC
* * * *
470469 TTGCAAAACCAAAACATCAATATTGTGTATCCTAATGAGAAGACTATGTTTATAGTGCCTAAT-G
131 TTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCC
* * ** * * *
470533 TCGAAAAGAATGGGGATTAGTTTTACCATTCATGTTTGTTTTATTTAAGTGAC--ATTTTGATTC
196 T-GAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
* *
470596 TATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAT
260 TATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAT
*
470661 TGATGGGAATGTGTTTTTGG-ACCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCT
325 TGAAGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCT
* *
470725 TGTCTTATTTAAAGGATGAACTTTTATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCATGCA
390 TGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCATGCA
470790 AAAGAAAATCATCAATATCA-TT
455 AAAGAAAATCATCAATATCATTT
* * ** * *
470812 AGTCCTAATGAGAAGAATGTGCTTCTTCTGCCTTACCACAAAATGAATGAAGATCATTACTAGAA
1 A-TCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAA
* * ** * * * * *
470877 TCCAGGTTTGTCACATTTGAGGCACAAACTTAAACTTTAGAGAAATTGGTGGTAAAAATGCATTT
65 TCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTT
* * *
470942 CTTGCTAAACCAAAACATCAATATCGTGTATCCTAAAGAGAAGAAC-ATATTTATGGTGCCTAAT
130 CTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAG-ACTATGTTTATGGTGCCTAAT
** * * *
471006 CAAGAAAAGAATGGGGATTAGTATGAGTATTCAAGTTTGTCTTATTTAAGTGACAAACTTTGGTT
194 CCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
* * * *
471071 CTATAAAAAACGGTGGAAAAAAAAGCTTTCCATGCGACACCAAAGCATCAATGTCATGTATCCTA
259 CTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTA
* * * * * * * *
471136 ATGAAAGAAATGTGTTTTAGGTTCCCAATCCTAAAAATG-ATGGAGACTGTTGCGAGAATCGATG
324 TTGAAGGGAATGTGTTTTTGGTACCCAATCTTGAAAA-GAATGGAGACTGTTACGAGAATCGATG
* * * *
471200 GTTGTCTTATTTAAGGGATGAACTTTGATTATAAGGAAAAT-AGGGCAAATAAAAGATTTCCATG
388 CTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCATG
*
471264 CAAAAGAAAATCATTAATATCATTT
453 CAAAAGAAAATCATCAATATCATTT
* * ** * *
471289 ATCGTAATGAGGAGAATGTGCCTATAGCACCTAATTC-CAAAATGAATCACA-ATCATTAATAGA
1 ATCCTAATGAGGAGAATGTGCTTATAGTGCCTAA-TCACAAAATGAATGA-AGATCATTACTAGA
* * *
471352 ATCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTACAAAAATT-ATGGGGAAAATGCCTT
64 ATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTT
* * * * * *
471416 TCCTGCGAAACAAAAACATTAATATCGTGTATCTTAATGAGAAAACTATGTTTAGGGTGCCTAAT
129 TCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT
* *
471481 CCAGAAAAGAATGGGGATTAGTATG-GCTATTCGTGTTTGTCTTATTTAAGAGACAAACTTTGAT
194 CCTGAAAAGAATGGGGATTAGTATGAG-TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
* * * * *
471545 TCCAACAAAAACGGTGGAAATAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCGTGTATCCT
258 TCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT
* *
471610 ATTGAAGGGAATTTGTTATTGGTACCCAATCTTGAAAAGAATGGAGACTG-T-C--G-AT---T-
323 ATTGAAGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATG
* *
471666 CTTAG-CTTATTTAAGGGATGAACTTTGATATTATGGAAAATAAGGGCAAATAAAAGATTTCCAT
388 CTT-GTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCAT
*
471730 GCAAAAGAAAATCATCAATATCATTA
452 GCAAAAGAAAATCATCAATATCATTT
* * * ** *
471756 ATCCTAATAAGAAGAATGTACTTATTCTGCCTTATCACAAAATGAATGAAGATCATTACTAGAAT
1 ATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* * * * *
471821 CCAGGTTTGTCTCATTTGATGCATAAACTTAAACTTTACCAAAATTGGTGGGAAAAATGCCTTTC
66 CCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTC
* *
471886 TTGCGAAACCAAAACATCAATACCGTGCATCCTAATGAGAAGAAC-ATGTTTATGGTGCCTAATC
131 TTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAG-ACTATGTTTATGGTGCCTAATC
* * *
471950 CAGAAAAGAATGGGGATTAGTATGAGTATTTATGTTTGTCTTATTTAACAGACAAACTTTGATTC
195 CTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
* * *
472015 TATAAAAAACGGTCGAAAGGAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAT
260 TATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAT
* ** *
472080 TGAAGGG-ATAGTGTTTTTGGCT-CCCAATCTTGAAAGGAATGGAGGTTGTTACAAGAATCGATG
325 TGAAGGGAAT-GTGTTTTTGG-TACCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATG
* * * *
472143 CTTGTCTTCTTTAGGGGATGAACTTTGATTTCAAGGAAAATAA-GGCAAAGAAAAGATTTCCATG
388 CTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCATG
*
472207 CAAAAGAAAATCTTCAATATCATTT
453 CAAAAGAAAATCATCAATATCATTT
* *
472232 CTCCTAAT-AAG-GAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
1 ATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* * *
472295 CTATGTTTGTCTCATTTGAGGCGTGAACTTAGACTTTACAATAATTGGTGGGAAAAATGCCTTTC
66 CCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTC
* * * * * * * * *
472360 TTACAAAACCAAAGCATTAATATTGCGTATCCTAGTGAGAAGACTATGTTTTTGGGGCCTAATCC
131 TTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCC
* * * ** *
472425 TGAAAAGATTAGGGATTAGTTTGACCATTCATGTTTGTCTTATTTAAGAG--AAACTTTGATTCC
196 TGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
* * * *
472488 ATCAAAAAAGGTAGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCGTGTATCCTATT
261 ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATT
* * * * *
472553 GAAGGGAATTTGTTTTTGGTACCCAATCTTGGAAAGAATGGAGACTATTACGAGAATAGATTCTT
326 GAAGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTT
* *
472618 ATCTTATTTAAGGGATGAACTTTGATTTTAT-GATAAATAAGGGCAAAGAAAAGATTTTCATGCA
391 GTCTTATTTAAGGGATGAACTTTGATTTTATGGA-AAATAAGGGCAAAGAAAAGATTTCCATGCA
* * *
472682 AAAAAAAATAATCAATATCATTA
455 AAAGAAAATCATCAATATCATTT
*
472705 ATCCTAATGAGAAGAATGTGCTT
1 ATCCTAATGAGGAGAATGTGCTT
472728 CTTTGATGAC
Statistics
Matches: 8183, Mismatches: 1120, Indels: 423
0.84 0.12 0.04
Matches are distributed among these distances:
457 3 0.00
458 129 0.02
459 20 0.00
460 208 0.03
461 1 0.00
462 2 0.00
463 4 0.00
466 38 0.00
467 138 0.02
468 225 0.03
469 5 0.00
470 4 0.00
471 110 0.01
472 650 0.08
473 856 0.10
474 1718 0.21
475 1549 0.19
476 1440 0.18
477 439 0.05
478 137 0.02
479 97 0.01
480 30 0.00
481 1 0.00
482 1 0.00
488 1 0.00
491 1 0.00
493 3 0.00
494 2 0.00
495 18 0.00
496 345 0.04
497 8 0.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (477 bp):
ATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
CCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTC
TTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCC
TGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATT
GAAGGGAATGTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTT
GTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAAGGGCAAAGAAAAGATTTCCATGCAA
AAGAAAATCATCAATATCATTT
Found at i:467879 original size:158 final size:159
Alignment explanation
Indices: 467233--468851 Score: 478
Period size: 158 Copynumber: 10.2 Consensus size: 159
467223 GAATGAGTAT
* * *
467233 TCAA-GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAAAGGTGGACAGAAAAGCTT
1 TCAATGTTTGTCTTATTTAAGGGATAAACTTTGATTCTATCAAAAAAAGGTGGAAAGAAAAGCTT
* * *
467297 TCCTTACGACACCAAAGCATCAATGTCATGTATCCTACTGAAGGGACTATGTTTTTGGCT-CCCA
66 TCCTTACGA-ACCAAAGCATCAATATCATGTATCCTAATGAAGGGACTATGTTTATGG-TACCCA
467361 ATCTAAAAAACAAAGGAGATTGTTACGAGAA
129 ATCTAAAAAACAAAGGAGATTGTTACGAGAA
* * * * * * * * *
467392 TCAATGCTTATCTTATTTAGGGGATAAACTTCGATTTTATGGAAAATAA-G-GCAAAGAAAAGAT
1 TCAATGTTTGTCTTATTTAAGGGATAAACTTTGATTCTAT-CAAAAAAAGGTGGAAAGAAAAGCT
* *** ** * * * * * * * *
467455 TTTCAGGCAGAAGAAAATCATCAATATCATTTCTCCTAAT-AA-GGAATGTGCTTATAGTACCTA
65 TTCCTTAC-GAACCAAAGCATCAATATCATGTATCCTAATGAAGGGACTATGTTTATGGTACCCA
** * * ** *
467518 AT-TACAAAATGAATGAAGATCATTACTAGAA
129 ATCTA-AAAAACAAAGGAGATTGTTACGAGAA
* ** * * * * * * * *
467549 TCCATGTTTGTCCCATTTGAGGCATGAACTTAGACTT-TA-CTAAAAATGGTGGGAA-AAATGCC
1 TCAATGTTTGTCTTATTTAAGGGATAAACTTTGA-TTCTATCAAAAAAAGGTGGAAAGAAAAG-C
* * * * * *
467611 TTT-CTTGCGAAACCAAAACATCAATATCGTGTATCCTAATG-AGAAGACTATGTTCATGGTGCC
64 TTTCCTTACG-AACCAAAGCATCAATATCATGTATCCTAATGAAG-GGACTATGTTTATGGTACC
* * * * * * * *
467674 GAATCCTGAAAAA-AATGGGGAATAG-AATGAGTAT
127 CAAT-CTAAAAAACAAAGGAG-ATTGTTACGAG-AA
* *
467708 TCAA-GTTTGTCTTATTTAAGGGACAAACTTTGATTCTATC-AAAAAAGGTGAAAAGAAAAGCTT
1 TCAATGTTTGTCTTATTTAAGGGATAAACTTTGATTCTATCAAAAAAAGGTGGAAAGAAAAGCTT
* * * *
467771 TCCTTACGAACCAAAGCATCAATGTCACGTATCCTACTGAAGGGACTATGTTTTTGGCT-CCCAA
66 TCCTTACGAACCAAAGCATCAATATCATGTATCCTAATGAAGGGACTATGTTTATGG-TACCCAA
467835 TCTAAAAAACAAAGGAGATTGTTACGAGAA
130 TCTAAAAAACAAAGGAGATTGTTACGAGAA
* * * * * *
467865 TCAATGCTTT-TCTTATTTAGGGGATAAACTTTGATTTTATGGAAAATAA-G-GCAAAGAAAAGA
1 TCAATG-TTTGTCTTATTTAAGGGATAAACTTTGATTCTAT-CAAAAAAAGGTGGAAAGAAAAGC
* *** ** * * * * * * * * *
467927 TTTTCAGGCAGAAGAAAATCATCAATATCATTTCTCCTAAT-AA-GGAATGTGCTTATAGTGCCT
64 TTTCCTTAC-GAACCAAAGCATCAATATCATGTATCCTAATGAAGGGACTATGTTTATGGTACCC
** * * ** *
467990 AATC-ACAAAATGAATGAAGATCATTACTAGAA
128 AATCTA-AAAAACAAAGGAGATTGTTACGAGAA
* * * * * ** * *
468022 TCCATGTTTGT-TTCATTTGAGGCATGAACTTAGACTT-TA-CAAAAATTGGTGGGAA-AAATGC
1 TCAATGTTTGTCTT-ATTTAAGGGATAAACTTTGA-TTCTATCAAAAAAAGGTGGAAAGAAAAG-
* * * * *** * *
468083 CTAT-CTTGCAAAACCAAAACATCAATATCGCATATCCTAATG-AGAAGACTATGTTTATGGTGC
63 CTTTCCTTAC-GAACCAAAGCATCAATATCATGTATCCTAATGAAG-GGACTATGTTTATGGTAC
* * ** * * * *
468146 CTAATCCT-AAAAAGATTGGGGATTAGTT-TGACCAT
126 CCAAT-CTAAAAAACAAAGGAGATT-GTTACGA-GAA
* * * * * *
468181 TC-ATGTTTGTCTTATTTAAGAGATAAACTTTGATT-TCATCAAAACATGATGGAAATAAAGGCT
1 TCAATGTTTGTCTTATTTAAGGGATAAACTTTGATTCT-ATCAAAAAAAGGTGGAAAGAAAAGCT
* * * * * * * * * *
468244 TTTCTT-CTGACACGAAAGCATCAATGTCAAGTAT-CTGATTGATGGGAATGTGTTTTTGGTTCC
65 TTCCTTAC-GA-ACCAAAGCATCAATATCATGTATCCT-AATGAAGGGACTATGTTTATGGTACC
* ** * * ** * * *
468307 CAACCTTGAGAAGAGTGGAGACTCTAACGAGAA
127 CAATCTAAAAAACAAAGGAGATTGTTACGAGAA
* * * * * * * * *
468340 TCAATGCTGGCCTTATTTAAGGGATAAACTTTGATTTTATGGAAAATATGG-GCAAAGAAAAGAT
1 TCAATGTTTGTCTTATTTAAGGGATAAACTTTGATTCTAT-CAAAAAAAGGTGGAAAGAAAAGCT
** * * ** * * * * * * **
468404 TTCAATGCAAAAGAAAATCATCAAAATCAT-TAATCCTATTG-AGGAGAATATGCTTATAGCGCC
65 TTCCTTAC-GAACCAAAGCATCAATATCATGT-ATCCTAATGAAGG-GACTATGTTTATGGTACC
* * * ** *
468467 TAATC-ACAAAAAGAAAGAAGATCATTACTAGAAAA
127 CAATCTA-AAAAACAAAGGAGATTGTTAC--GAGAA
* * * * * * * * * * * * *
468502 TCTAGGTTTGCCTCATTTGA-TGCTCGAAC-TTAACTT-TA-GAAAAATAGGTGCAAA-AAATGC
1 TCAATGTTTGTCTTATTTAAGGGAT-AAACTTTGA-TTCTATCAAAAAAAGGTGGAAAGAAAAG-
* * * * * *
468562 CTTT-CTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGAAC-ATGTTTATGGTGC
63 CTTTCCTTACG-AACCAAAGCATCAATATCATGTATCCTAATGA-AGGGACTATGTTTATGGTAC
* * * * * *
468625 CTAATCCAAAAAAGAATGG-GATTAG-TATGAGCAT
126 CCAATCTAAAAAACAAAGGAGATT-GTTACGAG-AA
* *
468659 TC-ATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATC-AAAAACGGTGGAAAGAAAAGCTT
1 TCAATGTTTGTCTTATTTAAGGGATAAACTTTGATTCTATCAAAAAAAGGTGGAAAGAAAAGCTT
* * * * * * *
468722 TTCTTGCGACACCAAAGCATCAATGTCATGTATCCTACTGAAGGGAATGTGTTTTTGGTACCCAA
66 TCCTTACGA-ACCAAAGCATCAATATCATGTATCCTAATGAAGGGACTATGTTTATGGTACCCAA
** * * * * * *
468787 TCTTGAATAGAATGTACATTGTT-CAAGAA
130 TCTAAAAAACAAAGGAGATTGTTACGAGAA
* * * * *
468816 TCGATGCTAGTCTTATTTAAGGGGTCAACTTTGATT
1 TCAATGTTTGTCTTATTTAAGGGATAAACTTTGATT
468852 TTATGGAAAA
Statistics
Matches: 1037, Mismatches: 336, Indels: 175
0.67 0.22 0.11
Matches are distributed among these distances:
155 9 0.01
156 96 0.09
157 181 0.17
158 315 0.30
159 192 0.19
160 193 0.19
161 28 0.03
162 23 0.02
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.30
Consensus pattern (159 bp):
TCAATGTTTGTCTTATTTAAGGGATAAACTTTGATTCTATCAAAAAAAGGTGGAAAGAAAAGCTT
TCCTTACGAACCAAAGCATCAATATCATGTATCCTAATGAAGGGACTATGTTTATGGTACCCAAT
CTAAAAAACAAAGGAGATTGTTACGAGAA
Found at i:469824 original size:19 final size:19
Alignment explanation
Indices: 469800--469849 Score: 73
Period size: 19 Copynumber: 2.6 Consensus size: 19
469790 GGAAAATAAG
*
469800 GGCAAAGAAAAGATTTCTA
1 GGCAAAGAAAAGATTTCCA
469819 GGCAAAGAAAAGATTTCCA
1 GGCAAAGAAAAGATTTCCA
*
469838 GGAAAAAGAAAA
1 GG-CAAAGAAAA
469850 TCATCAATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
19 20 0.71
20 8 0.29
ACGTcount: A:0.54, C:0.10, G:0.22, T:0.14
Consensus pattern (19 bp):
GGCAAAGAAAAGATTTCCA
Found at i:477744 original size:15 final size:15
Alignment explanation
Indices: 477701--477754 Score: 63
Period size: 15 Copynumber: 3.4 Consensus size: 15
477691 CTTTTTCTCT
477701 CCTCCTCCTATCATC
1 CCTCCTCCTATCATC
*
477716 CCTTCTCTCTCTATTATC
1 CC-TC-CTC-CTATCATC
*
477734 TCTCCTCCTATCATC
1 CCTCCTCCTATCATC
477749 CCTCCT
1 CCTCCT
477755 ATCTTTACTA
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
15 14 0.44
16 5 0.16
17 5 0.16
18 8 0.25
ACGTcount: A:0.11, C:0.48, G:0.00, T:0.41
Consensus pattern (15 bp):
CCTCCTCCTATCATC
Found at i:477744 original size:33 final size:33
Alignment explanation
Indices: 477702--477802 Score: 103
Period size: 42 Copynumber: 2.8 Consensus size: 33
477692 TTTTTCTCTC
477702 CTCCTCCTATCATCCCTTCTCTCTCTATTATCT
1 CTCCTCCTATCATCCCTTCTCTCTCTATTATCT
*
477735 CTCCTCCTATCATCCCTCCTATCTTTACTATCTCTCTTATCT
1 CTCCTCCTATCAT--C-CCT-TC--T-C--TCTCTATTATCT
*
477777 CTCCTCCTATCATCCCTTCTATCTCT
1 CTCCTCCTATCATCCCTTCTCTCTCT
477803 TCTTTCTCTT
Statistics
Matches: 57, Mismatches: 2, Indels: 18
0.74 0.03 0.23
Matches are distributed among these distances:
33 18 0.32
35 1 0.02
36 4 0.07
37 2 0.04
38 2 0.04
39 4 0.07
40 2 0.04
42 24 0.42
ACGTcount: A:0.13, C:0.43, G:0.00, T:0.45
Consensus pattern (33 bp):
CTCCTCCTATCATCCCTTCTCTCTCTATTATCT
Found at i:477811 original size:42 final size:42
Alignment explanation
Indices: 477717--477811 Score: 138
Period size: 42 Copynumber: 2.3 Consensus size: 42
477707 CCTATCATCC
*
477717 CTTCTCTCTCTATTATCTCTCCTCCTATCATCCCTCCTATCT
1 CTTCTATCTCTATTATCTCTCCTCCTATCATCCCTCCTATCT
* *
477759 -TTACTATCTCTCTTATCTCTCCTCCTATCATCCCTTCTATCT
1 CTT-CTATCTCTATTATCTCTCCTCCTATCATCCCTCCTATCT
*
477801 CTTCTTTCTCT
1 CTTCTATCTCT
477812 TTGAGGCCTA
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
41 2 0.04
42 43 0.91
43 2 0.04
ACGTcount: A:0.12, C:0.40, G:0.00, T:0.48
Consensus pattern (42 bp):
CTTCTATCTCTATTATCTCTCCTCCTATCATCCCTCCTATCT
Found at i:480481 original size:357 final size:355
Alignment explanation
Indices: 479781--480486 Score: 1006
Period size: 359 Copynumber: 2.0 Consensus size: 355
479771 GAGACTACCG
* * *
479781 CGAGAATTGATGCTCGTCTTATTTAAGAGATGAATTTGATTTTATGGAAAATAAGGCAAAGAAAA
1 CGAGAATCGATGCTCGTCTTATTTAAGAGATAAATTTGATTTTAAGGAAAATAAGGCAAAGAAAA
***
479846 GATTTCCATGCAAAAGAAAATCATCAATATCATTTCTCCTAATAAGGAATGTGCTTATAATGCCT
66 GATTTCCATGCAAAAGAAAATCATCAATATCATCAATCCTAATAAGGAATGTGCTTATAATGCCT
** *
479911 AATCACTAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCCCATTTGAGGATGAACTTAGA
131 AATCAAAAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCCCATTTGAGGATGAACTTAGA
* **
479976 CTTTACAAAAAATGGTGGGAAAAATACCTCTCTTGCAAAACCAAAACATGAAGATCGTATATCCT
196 CTTTACAAAAAATGGTGGGAAAAATACCTCTCTTGCAAAACCAAAACATCAAGATCACATATCCT
* * **
480041 AATGAGAAGACCATGTTTATGGTGCCAAATCGTGAAAAAAAAATGGGGAATAGAATGAGTATTCA
261 AATGAGAAGACCACGTTTATGGTGCCAAATCCTG-AAAAAAAATGGGGAATAGAATGACCATTCA
480106 TGTTTGTCTTATTTAAGAGACAAACTTGTTA
325 TGTTTGTCTTATTTAAGAGACAAACTTGTTA
* * *
480137 CGAGAATCGATGCTTGTCTTCTTTAATG-GATAAACTTTGATTTTAAGGAAAATAATGCAAAGAA
1 CGAGAATCGATGCTCGTCTTATTTAA-GAGATAAA-TTTGATTTTAAGGAAAATAAGGCAAAGAA
* * *
480201 AATATTTCCATGCAAAA-AAAATCATCAATATCATCAATCCTAATGAGGAGAATGTGCTTATAGT
64 AAGATTTCCATGCAAAAGAAAATCATCAATATCATCAATCCTAAT-AAG-GAATGTGCTTATAAT
*
480265 GCCTAATCAAAAAATAAATGAAGATCATTACTAGAATCTC-TGTTTGTCTCATTTGAGGCATGAA
127 GCCTAATCAAAAAATAAATGAAGATCATTACTAGAATC-CATGTTTGTCCCATTTGAGG-ATGAA
* * * * *
480329 CTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAAGATCACG
190 CTTAGACTTTACAAAAAATGGTGGGAAAAATACCTCTCTTGCAAAACCAAAACATCAAGATCACA
* ** * * **
480394 TATCCTAATGAGAAGACTACGTTTATGGTGCTTAATCCTG-AAAAGAATGGGGATTAGTTTGACC
255 TATCCTAATGAGAAGACCACGTTTATGGTGCCAAATCCTGAAAAAAAATGGGGAATAGAATGACC
480458 ATTCATGTTTGTCTTATTTAAGAGACAAA
320 ATTCATGTTTGTCTTATTTAAGAGACAAA
480487 TTTTGATTCT
Statistics
Matches: 309, Mismatches: 35, Indels: 11
0.87 0.10 0.03
Matches are distributed among these distances:
356 52 0.17
357 93 0.30
358 66 0.21
359 98 0.32
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.30
Consensus pattern (355 bp):
CGAGAATCGATGCTCGTCTTATTTAAGAGATAAATTTGATTTTAAGGAAAATAAGGCAAAGAAAA
GATTTCCATGCAAAAGAAAATCATCAATATCATCAATCCTAATAAGGAATGTGCTTATAATGCCT
AATCAAAAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCCCATTTGAGGATGAACTTAGA
CTTTACAAAAAATGGTGGGAAAAATACCTCTCTTGCAAAACCAAAACATCAAGATCACATATCCT
AATGAGAAGACCACGTTTATGGTGCCAAATCCTGAAAAAAAATGGGGAATAGAATGACCATTCAT
GTTTGTCTTATTTAAGAGACAAACTTGTTA
Found at i:481250 original size:33 final size:32
Alignment explanation
Indices: 481205--481269 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 32
481195 ACGCACCCAG
*
481205 ATGTATCGATACATATTGC-TTAGTATCGATACA
1 ATGTATCAATACATATT-CATTA-TATCGATACA
*
481238 ATGTATCAATACATGTTCATTATATCGATACA
1 ATGTATCAATACATATTCATTATATCGATACA
481270 TCATGGATTG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
32 11 0.38
33 18 0.62
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.37
Consensus pattern (32 bp):
ATGTATCAATACATATTCATTATATCGATACA
Found at i:481359 original size:24 final size:24
Alignment explanation
Indices: 481332--481389 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 24
481322 TTGATACATT
481332 ACTGTTCATCACTATTCACATATC
1 ACTGTTCATCACTATTCACATATC
* * * **
481356 ACTGTCCATCATTGTTCATGTATC
1 ACTGTTCATCACTATTCACATATC
*
481380 ACTATTCATC
1 ACTGTTCATC
481390 GCTGTTCATG
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.26, C:0.28, G:0.07, T:0.40
Consensus pattern (24 bp):
ACTGTTCATCACTATTCACATATC
Found at i:483513 original size:21 final size:22
Alignment explanation
Indices: 483489--483544 Score: 64
Period size: 21 Copynumber: 2.6 Consensus size: 22
483479 ACTAGAGGAG
*
483489 AAAATGAATGAGTTGGAAAA-C
1 AAAATGAATGAGTTGCAAAATC
*
483510 AAAA-GAAATGAGTTGCAAAATG
1 AAAATG-AATGAGTTGCAAAATC
483532 AAAATG-ATGAGTT
1 AAAATGAATGAGTT
483545 AACTAATAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
20 1 0.03
21 24 0.80
22 4 0.13
23 1 0.03
ACGTcount: A:0.52, C:0.04, G:0.23, T:0.21
Consensus pattern (22 bp):
AAAATGAATGAGTTGCAAAATC
Found at i:485127 original size:13 final size:13
Alignment explanation
Indices: 485109--485135 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
485099 ACATCTTGCT
485109 TTGTATCGATACA
1 TTGTATCGATACA
485122 TTGTATCGATACA
1 TTGTATCGATACA
485135 T
1 T
485136 GTTCATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:485150 original size:32 final size:33
Alignment explanation
Indices: 485090--485154 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 33
485080 CACACCTAGA
* *
485090 TGTATTGATACATCTTGCTTTGTATCGATACAT
1 TGTATCGATACATCTTGCATTGTATCGATACAT
*
485123 TGTATCGATACATGTT-CATTGTATCGATACAT
1 TGTATCGATACATCTTGCATTGTATCGATACAT
485155 GGACAATTGT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 15 0.52
33 14 0.48
ACGTcount: A:0.26, C:0.15, G:0.15, T:0.43
Consensus pattern (33 bp):
TGTATCGATACATCTTGCATTGTATCGATACAT
Found at i:485165 original size:20 final size:19
Alignment explanation
Indices: 485119--485175 Score: 87
Period size: 19 Copynumber: 2.9 Consensus size: 19
485109 TTGTATCGAT
*
485119 ACATTGTATCGATACATGT
1 ACATTGTATCGATACATGG
*
485138 TCATTGTATCGATACATGG
1 ACATTGTATCGATACATGG
485157 ACAATTGTATCGATACATG
1 AC-ATTGTATCGATACATG
485176 AAACTGGCAG
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 18 0.53
20 16 0.47
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.35
Consensus pattern (19 bp):
ACATTGTATCGATACATGG
Found at i:485230 original size:20 final size:20
Alignment explanation
Indices: 485205--485257 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 20
485195 TATCACTATT
* *
485205 TGTATCCATACATGGT-ACAA
1 TGTATCGATACATGATGA-AA
485225 TGTATCGATACATGATGAAA
1 TGTATCGATACATGATGAAA
485245 TGTATCGATACAT
1 TGTATCGATACAT
485258 AGCTTGTAAC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 29 0.97
21 1 0.03
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.32
Consensus pattern (20 bp):
TGTATCGATACATGATGAAA
Found at i:492736 original size:16 final size:16
Alignment explanation
Indices: 492715--492747 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
492705 AATAAATTTT
*
492715 TTAATATAGGGGGAGA
1 TTAATATAGAGGGAGA
492731 TTAATATAGAGGGAGA
1 TTAATATAGAGGGAGA
492747 T
1 T
492748 AACCGTGTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.39, C:0.00, G:0.33, T:0.27
Consensus pattern (16 bp):
TTAATATAGAGGGAGA
Found at i:493398 original size:13 final size:13
Alignment explanation
Indices: 493380--493406 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
493370 ACATCTTGCT
493380 TTGTATCGATACA
1 TTGTATCGATACA
493393 TTGTATCGATACA
1 TTGTATCGATACA
493406 T
1 T
493407 GTTCATTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:493403 original size:33 final size:32
Alignment explanation
Indices: 493361--493425 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 32
493351 CACACCCAGA
* *
493361 TGTATCGATACATCTTGCTTTGTATCGATACAT
1 TGTATCGATACATCTT-CATTATATCGATACAT
*
493394 TGTATCGATACATGTTCATTATATCGATACAT
1 TGTATCGATACATCTTCATTATATCGATACAT
493426 GAAACTGGCA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 14 0.48
33 15 0.52
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.42
Consensus pattern (32 bp):
TGTATCGATACATCTTCATTATATCGATACAT
Found at i:494428 original size:21 final size:22
Alignment explanation
Indices: 494404--494450 Score: 55
Period size: 20 Copynumber: 2.2 Consensus size: 22
494394 GATGATTAAT
*
494404 ATTTTGATTGAAT-ATT-GATTG
1 ATTTTG-TTAAATGATTAGATTG
494425 A-TTTGTTAAATGATTAGATTG
1 ATTTTGTTAAATGATTAGATTG
494446 ATTTT
1 ATTTT
494451 TGAGTGTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
19 5 0.23
20 7 0.32
21 7 0.32
22 3 0.14
ACGTcount: A:0.30, C:0.00, G:0.17, T:0.53
Consensus pattern (22 bp):
ATTTTGTTAAATGATTAGATTG
Found at i:496282 original size:33 final size:32
Alignment explanation
Indices: 496240--496302 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 32
496230 ACACACCCAG
496240 ATGTATCGATACATATTGC-TTAGTATCGATATA
1 ATGTATCGATACATATT-CATTA-TATCGATATA
*
496273 ATGTATCGATACATGTTCATTATATCGATA
1 ATGTATCGATACATATTCATTATATCGATA
496303 CATCATGGAT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 9 0.32
33 19 0.68
ACGTcount: A:0.33, C:0.13, G:0.14, T:0.40
Consensus pattern (32 bp):
ATGTATCGATACATATTCATTATATCGATATA
Found at i:497331 original size:18 final size:18
Alignment explanation
Indices: 497289--497338 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
497279 TCCATCTTCT
497289 TCTCTCCTCT-TCTTATCA
1 TCTCTCCTCTCTC-TATCA
* *
497307 TCCCTCCTCTCTCTATTA
1 TCTCTCCTCTCTCTATCA
*
497325 TCTCTCCTATCTCT
1 TCTCTCCTCTCTCT
497339 CCTTCTATCA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
18 25 0.93
19 2 0.07
ACGTcount: A:0.10, C:0.42, G:0.00, T:0.48
Consensus pattern (18 bp):
TCTCTCCTCTCTCTATCA
Found at i:497368 original size:33 final size:33
Alignment explanation
Indices: 497323--497395 Score: 112
Period size: 33 Copynumber: 2.2 Consensus size: 33
497313 CTCTCTCTAT
* *
497323 TATCTCTCCTATCTCTCCTTC-TATCATCCCTTC
1 TATCTCTACTATCTCTCC-TCATATCATCCCTCC
497356 TATCTCTACTATCTCTCCTCATATCATCCCTCC
1 TATCTCTACTATCTCTCCTCATATCATCCCTCC
497389 TATCTCT
1 TATCTCT
497396 TTTTTTCTCT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
32 2 0.05
33 35 0.95
ACGTcount: A:0.15, C:0.41, G:0.00, T:0.44
Consensus pattern (33 bp):
TATCTCTACTATCTCTCCTCATATCATCCCTCC
Found at i:499872 original size:77 final size:77
Alignment explanation
Indices: 499756--499901 Score: 231
Period size: 77 Copynumber: 1.9 Consensus size: 77
499746 CAATATTATT
* * * *
499756 TATCCTAAATAGAAGAACATGTTTATGTTGCCTAATCCTGAAAAGAATAGGGATTAGTATGAGTA
1 TATCCTAAATAGAAGAACATGTTTATGGTGCCTAATCCTGAAAAAAAAAGGGATTAGTATAAGTA
499821 TTCAATATCGTG
66 TTCAATATCGTG
*
499833 TATCCTAAATA-AATGAACATGTTTATGGTGCCTAATCCTGAAAAAAAAAGGGATTAGTCTAAGT
1 TATCCTAAATAGAA-GAACATGTTTATGGTGCCTAATCCTGAAAAAAAAAGGGATTAGTATAAGT
499897 ATTCA
65 ATTCA
499902 TATTTGCCTT
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
76 2 0.03
77 61 0.97
ACGTcount: A:0.38, C:0.12, G:0.18, T:0.32
Consensus pattern (77 bp):
TATCCTAAATAGAAGAACATGTTTATGGTGCCTAATCCTGAAAAAAAAAGGGATTAGTATAAGTA
TTCAATATCGTG
Found at i:500367 original size:556 final size:551
Alignment explanation
Indices: 499271--500371 Score: 1522
Period size: 556 Copynumber: 2.0 Consensus size: 551
499261 AATCAAAACA
*
499271 TCAATATCGCGTATCCTAATGAGAAGACTATGTTTAGGGTGCCTAATCCTAAAAAGAATAGGGAT
1 TCAATATCGCGTATCCTAATGAGAAGACTATGTTTAGGGTGCCTAATCCTAAAAAGAAAAGGGAT
* * * *
499336 TAGTATGGCTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAA
66 TAGTATAGCTATTCATATTTGCCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAA
* * *
499401 AGAAAAGCTTTTCTTGTGACACCAAAGCATCAATATCATGTATCTTATTGAAAGGAATATGTTTT
131 AGAAAAGCGTTTCTTGCGACACCAAAGCATCAATATCATGTATCCTATTGAAAGGAATATGTTTT
* * *
499466 TCGTCCCCAATCTTGAAAAGAATGTAGATTGTTACGAGAATTGATGCTTGTCTTATTTAAGGGAT
196 TCGTACCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGAT
*
499531 GAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTTCGTGCAAAAGAAAGTCATCAATAT
261 GAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTTCGTGCAAAAGAAAATCATCAATAT
* * * *
499596 CATTTCTCCTAATTAGAAATGTGCTTATAGTGCCTAATTACAAAATGAATGAAGATCATTACTAG
326 CATTTATCCTAATGAGAAATGTGCTTACAGTGCCTAATCACAAAATGAATGAAGATCATTACTAG
* * * * *
499661 AATCCATGTTTGTCTCGTTGGAGGCACGAACTTAGACTTTACAATAATTGGTGGGAAAAATACCT
391 AATCCATGTTTGTCTCATTGGACGCACGAACTTAAACTTTACAAAAATTAGTGGGAAAAATACCT
* * ** * * * *
499726 TTCTTGCGAAACTAAAGCATCAATATTATTTATCCTAAATAGAAGAACATGTTTATGTTGCCTAA
456 TTCTTACAAAAAAAAAACATCAATATCATGTATCCTAAATAGAAGAACATGTTTATGGTGCCTAA
499791 TCCTGAAAAGAATAGGGATTAGTATGAGTAT
521 TCCTGAAAAGAATAGGGATTAGTATGAGTAT
* *
499822 TCAATATCGTGTATCCTAAAT-A-AATGAAC-ATGTTTATGGTGCCTAATCCTGAAAAA-AAAAG
1 TCAATATCGCGTATCCT-AATGAGAA-G-ACTATGTTTAGGGTGCCTAATCCT-AAAAAGAAAAG
* *
499883 GGATTAGTCTAAG-TATTCATATTTGCCTTATTTAAGAGACAAACTTTTGATTCTATCAAAAACG
62 GGATTAGTAT-AGCTATTCATATTTGCCTTATTTAAGAGACAAAC-TTTGATTCCATCAAAAACG
* * **
499947 GTGGAAAGAAAAGCGTTTCTTGCGACACCAAAGCCTCAATGTTGTGTATCCTATTG-AAGTGAAT
125 GTGGAAAGAAAAGCGTTTCTTGCGACACCAAAGCATCAATATCATGTATCCTATTGAAAG-GAAT
* * * * *
500011 GTGTTTTTGGTACCCAATCTTGAAAAGATTGGAGATTGTTACGAGTATCGATGCTTGTCTTTTTT
189 ATGTTTTTCGTACCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTT
* *
500076 AAGGGATGAACTTTGATTTTA-GGTTTAATATAGGGCAAAGAAAAGATTTT-GATAG-AAAAGAA
254 AAGGGATGAACTTTGATTTTATGG---AAAATAAGGCAAAGAAAAGATTTTCG-T-GCAAAAGAA
500138 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTACAGTGCCTAATCACAAAATGAATG
314 AATCATCAATATCATTTATCCTAATGA-GA-AATGTGCTTACAGTGCCTAATCACAAAATGAATG
*
500203 AAGATCATTACTAGAATCCATGTTTGTCTCATTTGACGCACGAACTTAAACTTTACAAAAATTAG
377 AAGATCATTACTAGAATCCATGTTTGTCTCATTGGACGCACGAACTTAAACTTTACAAAAATTAG
* *
500268 TGGGAAAAATACCTTTCTTACAAAAAAAAAACATCAATATCGTGTATCCT-AATGAGAAGAGCAA
442 TGGGAAAAATACCTTTCTTACAAAAAAAAAACATCAATATCATGTATCCTAAAT-AGAAGAAC-A
* * * *
500332 T-TTTATGGTGCCTGATTCTGAAAATAATGGGGATTAGTAT
505 TGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTAT
500372 ATGCATTCAT
Statistics
Matches: 483, Mismatches: 51, Indels: 27
0.86 0.09 0.05
Matches are distributed among these distances:
550 2 0.00
551 85 0.18
552 159 0.33
553 1 0.00
554 54 0.11
555 6 0.01
556 174 0.36
557 2 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (551 bp):
TCAATATCGCGTATCCTAATGAGAAGACTATGTTTAGGGTGCCTAATCCTAAAAAGAAAAGGGAT
TAGTATAGCTATTCATATTTGCCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAA
AGAAAAGCGTTTCTTGCGACACCAAAGCATCAATATCATGTATCCTATTGAAAGGAATATGTTTT
TCGTACCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGAT
GAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTTCGTGCAAAAGAAAATCATCAATAT
CATTTATCCTAATGAGAAATGTGCTTACAGTGCCTAATCACAAAATGAATGAAGATCATTACTAG
AATCCATGTTTGTCTCATTGGACGCACGAACTTAAACTTTACAAAAATTAGTGGGAAAAATACCT
TTCTTACAAAAAAAAAACATCAATATCATGTATCCTAAATAGAAGAACATGTTTATGGTGCCTAA
TCCTGAAAAGAATAGGGATTAGTATGAGTAT
Found at i:502864 original size:159 final size:157
Alignment explanation
Indices: 499822--504715 Score: 1411
Period size: 159 Copynumber: 30.9 Consensus size: 157
499812 GTATGAGTAT
* * * * *
499822 TCAATATCGTGTATCCTAAATAAATGAACA--TGTTTATGGTGCCTAATCCTGAAAAAAAAAGG-
1 TCAATATCATGTATCCT-AATGAAGGAA-ATGTGTTTATGGTGCCTAATCCTG-AAAAGAATGGA
* * * * *
499884 GATTAGTCTAAGTATTCATATTTGCCTTATTTAAGAGACAAACTTTTGATTCTATCAAAAACGGT
63 GATTAGTATGAG-ATTCATGTTTGTCTTATTTAAGAGACAAAC-TTTGATT-TATCAAAAATGGT
* * * *
499949 GGAAAGAAAAGCGTTTCTTGCGACACCAAAGCC
125 GGAAAGAAAAGCTTTTCTTGTGAAACCAAAGCA
* ** * * * * * *
499982 TCAATGTTGTGTATCCTATTGAAGTG-AATGTGTTTTTGGTACCCAATCTTGAAAAGATTGGAGA
1 TCAATATCATGTATCCTAATGAAG-GAAATGTGTTTATGGTGCCTAATCCTGAAAAGAATGGAGA
* * * * ** ** *
500046 TT-GTTACGAG-TATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAGGTTTAATATAG
65 TTAG-TATGAGAT-TC-ATGTTTGTCTTATTTAAGAGACAAACTTTGA-TTTA--TCAAAAAT-G
* * * * * ** *
500109 G-GCAAAGAAAAGATTTTGATAG-AAAAGAAAATCA
123 GTGGAAAGAAAAGCTTTT-CTTGTGAAACCAAAGCA
* * ** *
500143 TCAATATCATTTATCCTAATG-AGGAGAATGTGCTTACAGTGCCTAATCAC--AAAATGAATGAA
1 TCAATATCATGTATCCTAATGAAGGA-AATGTGTTTATGGTGCCTAATC-CTGAAAA-GAATGGA
* * * * * **
500205 GATCATTACT-AGAATCCATGTTTGTCTCATTT--GACGCACGAACTTAAACTTTA-CAAAAATT
63 GATTAGTA-TGAG-ATTCATGTTTGTCTTATTTAAGA-G-ACAAACTTTGA-TTTATCAAAAA-T
* * * *** ** *
500266 AGTGGGAAA-AATA-CCTTTCTTACAAAAAAAAAACA
122 GGT-GGAAAGAAAAGCTTTTCTTGTGAAACCAAAGCA
* * * * * *
500301 TCAATATCGTGTATCCTAATGAGAAGAGCAA--T-TTTATGGTGCCTGATTCTGAAAATAATGGG
1 TCAATATCATGTATCCTAAT--GAAG-GAAATGTGTTTATGGTGCCTAATCCTGAAAAGAATGGA
*
500363 GATTAGTAT-ATGCATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGT
63 GATTAGTATGA-G-ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT-TATCAAAAATGGT
* * *
500427 GGAAGGAAAAGCTTTCCTTGTGACACCAAAGCA
125 GGAAAGAAAAGCTTTTCTTGTGAAACCAAAGCA
* * * * * * * * * * *
500460 TCAATGTCAAGTGTCCTATTGATGGGATTGTGTTTTTGGCT-CCCAATCTTGAAAACAATGGAGA
1 TCAATATCATGTATCCTAATGAAGGAAATGTGTTTATGG-TGCCTAATCCTGAAAAGAATGGAGA
** * * ** * * ** ** ** *
500524 TT-GTTACAAGAATCGATGCTCATCTTTATTTAGGGGATGAACTTCAATTTTATGGAAAATAAG-
65 TTAG-TATGAGATTC-ATGTTTGTC-TTATTTAAGAGACAAACTTTGA-TTTATCAAAAAT-GGT
* * * *
500587 GCAAAGAAAA-CATTTTCATGCAGAAGA--AAATCA
125 GGAAAGAAAAGC-TTTTCTTG-TGAA-ACCAAAGCA
* * * * * * * *
500620 TCAATATCATTTCTCCTAATG-A-GTAATGTGCTGATAGTGCTTAATCAC--AAAATGAATGAAG
1 TCAATATCATGTATCCTAATGAAGGAAATGTGTTTATGGTGCCTAATC-CTGAAAA-GAATGGAG
* * * * * * * *
500681 ATCTTCAATA-GA-ATCCTTGTTTGTGC-CA-TT-GGAGGCATGAACTTAGACTTTA-CAACAAC
64 A--TT-AGTATGAGATTCATGTTTGT-CTTATTTAAGAGACA--AACTTTGA-TTTATCAA-AAA
* * * * *
500740 TGGTGGGAA-AAATGCGTTTCTTG-CAATGCCAAAGCA
121 TGGTGGAAAGAAAAGCTTTTCTTGTGAA-ACCAAAGCA
* ** ** *
500776 TCAATCTCGCGTATCCTAAATAGAA-GAACA--TGTTTATTATGCCTAATCCTGAGAAGAATAGG
1 TCAATATCATGTATCCT-AAT-GAAGGAA-ATGTGTTTATGGTGCCTAATCCTGAAAAGAAT-GG
* * * * *
500838 -GATTACTATGAGTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAACAAAAACGGC
62 AGATTAGTATGAG-ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT-TATCAAAAATGGT
** * * *
500902 AAAAAGAAAAGCATTTCTTGCGACACCAAAGCA
125 GGAAAGAAAAGCTTTTCTTGTGAAACCAAAGCA
* * * * * *
500935 TCAATGTCATGTATCCTATTGAAGG-GATAGTGTTTTTGGCT-CCCAATCTTGAAAAGAATGGAG
1 TCAATATCATGTATCCTAATGAAGGAAAT-GTGTTTATGG-TGCCTAATCCTGAAAAGAATGGAG
* * * * * * ** *
500998 ATT-GTTACGAGAATCGATGCTTGTGTTCTTTAAGGGATGAACTTTGATTT-TAAGGAAAATAAG
64 ATTAG-TATGAGATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGATTTATCA--AAAAT--G
* * * ** ** *
501061 GT--AAAGAAAAGATTTCCATGCAAAAGAAAATCA
123 GTGGAAAGAAAAGCTTTTCTTGTGAAACCAAAGCA
* * *
501094 TCAATATCAT-TGATCCTAATG-AGGAGAATGTGCTTATAGTGCCTAATCAC--AAAATGAATGA
1 TCAATATCATGT-ATCCTAATGAAGGA-AATGTGTTTATGGTGCCTAATC-CTGAAAA-GAATGG
* * * * * * *
501155 AGATCATTACT-AGAATCTATGTTTGTCTCATTT--GAGGCATGAGCTTAGACTTTA-CAAAAAT
62 AGATTAGTA-TGAGATTC-ATGTTTGTCTTATTTAAGAGACA--AACTTTGA-TTTATCAAAAA-
* * * *
501216 TGGTGGGAA-AAATGCCTTTCTTATG-AACCAACA-CA
121 TGGTGGAAAGAAAAGCTTTTCTTGTGAAACCAA-AGCA
** *
501251 TCAATATCGCGTATCCTAATG-A-GAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGG-
1 TCAATATCATGTATCCTAATGAAGGAA-A-TGTGTTTATGGTGCCTAATCCTGAAAAGAAT-GGA
* * *
501313 GATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG-TTTCCATCAAAAACGAT
63 GATTAGTATGA-GATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTT--ATCAAAAATGGT
*
501377 -GATAAGAAAAGCTTTTCTTGTGACACCAAAGCA
125 GGA-AAGAAAAGCTTTTCTTGTGAAACCAAAGCA
* * * * * * * * *
501410 TCAATGTCATGTATCCTATTGAAGGGAATTTGTTTCTGGTACCCAATCTTGAAAAGAATGGAGAC
1 TCAATATCATGTATCCTAATGAAGGAAATGTGTTTATGGTGCCTAATCCTGAAAAGAATGGAGAT
* ** * * * * * * ** * * **
501475 TATTACAAAAATCGATGCTTATTTTATTTAAGGGATTAACTTTGATTGA--AAAATAAGG-ACAA
66 TAGTATGAGATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGATTTATCAAAA-ATGGTGGAA
* * * ** ** *
501537 AGAAAAGATTTCCATGCAAAAGAAAATCA
129 AGAAAAGCTTTTCTTGTGAAACCAAAGCA
* * * * *
501566 TCAATATCATTTATCCTAATG-AGGAGAATGTGCTTATTGTGCCTAATCAC--AAAATGAACGAA
1 TCAATATCATGTATCCTAATGAAGGA-AATGTGTTTATGGTGCCTAATC-CTGAAAA-GAATGGA
* * * * * * ** *
501628 GATCATTACT-AGATTTCCATGTTTTTCTCATTTGAG-GCACGAACTTAAACTTTA-CGAAAATT
63 GATTAGTA-TGAGA-TT-CATGTTTGTCTTATTTAAGAG-ACAAACTTTGA-TTTATC-AAAAAT
* * *
501690 GG-GTGAAA-AAAATGCCTTTCTTG-CAATACCAAAACA
122 GGTG-GAAAGAAAA-GCTTTTCTTGTGAA-ACCAAAGCA
* *
501726 TCAATATCATGTATCCTAATGAGAAGAACA--AGTTTATGGTGCCTAATCCT-AGAAA-AATGG-
1 TCAATATCATGTATCCTAATGA-AGGAA-ATGTGTTTATGGTGCCTAATCCTGA-AAAGAATGGA
* * * * * * *
501786 GATTAGTATAAGTACTCATGTTTGCCTTATTTAAGTGACAAGCTTTGATTTTATCAAAAACGATG
63 GATTAGTATGAG-ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA-TTTATCAAAAATGGTG
* *
501851 GAAAGAAAAGCTTTCCTTGTGACACCAAAGCA
126 GAAAGAAAAGCTTTTCTTGTGAAACCAAAGCA
* * * * * * * * * * *
501883 TGAATGTCGTGTATCCTATTAAAGGGAATGTGTTTTTGGTACCTAATCTTGAAAAGAGTAGAGAT
1 TCAATATCATGTATCCTAATGAAGGAAATGTGTTTATGGTGCCTAATCCTGAAAAGAATGGAGAT
** * * * ** * *
501948 T-GTTATGAGAAACGATGCTTCTCTTATTTAAGGGATGAACTTTGATTT-TAAAGAAAATAAG-G
66 TAG-TATGAGATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGATTTAT-CA-AAAAT-GGTG
* * ** *** ** *
502010 CAAAGAAAAGATTTTGATACAAAAGAAAATCA
126 GAAAGAAAAGCTTTTCTTGTGAAACCAAAGCA
* ** *
502042 TCAATATCATTTATCCTAAT-AAGGAGAATGTACTTATAGTGCCTAATCAC--AAAATGAATGAA
1 TCAATATCATGTATCCTAATGAAGGA-AATGTGTTTATGGTGCCTAATC-CTGAAAA-GAATG--
* * * * * **
502104 GACCATTACTA-GA-ATCCATATTTGTCTCATTT--GACG-CATGAACTTAAACTTTA-CAAAAA
61 GA-GATTAGTATGAGATTCATGTTTGTCTTATTTAAGA-GACA--AACTTTGA-TTTATCAAAAA
** * **
502163 TTGGTAGGAAAGATGA-C-TTTCTTGCGAAACCAAAATA
121 -TGGT-GGAAAGAAAAGCTTTTCTTGTGAAACCAAAGCA
** * ** * * *
502200 TCAATATTGTGTATCCTAATG-AGAAAACATATTTATGGTGCCTAATCCTAAAAAGAATGGGGAT
1 TCAATATCATGTATCCTAATGAAGGAAATGTGTTTATGGTGCCTAATCCTGAAAAGAATGGAGAT
* * * *
502264 TAGTATGTGTATTCATGTTTTTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATAGTCGAA
66 TAGTATGAG-ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT-TATCAAAAATGGTGGAA
* * * *
502329 AGAAAAGCTTTCCTTGCGACACCAAAGCG
129 AGAAAAGCTTTTCTTGTGAAACCAAAGCA
* * ** * * * *
502358 TCAATGTCATGTATCCTATTG-A--ATCTGTGTTTTTGGCT-CCCAAT-CTGGAAAACAAAGGAG
1 TCAATATCATGTATCCTAATGAAGGAAATGTGTTTATGG-TGCCTAATCCT-GAAAAGAATGGAG
* * * * * ** * *
502418 AAT-GTTACGAGAATCGATGCTTGTCTTATTT-AGGGATGAACTTTGATTT-TAAGGAAAATAAG
64 ATTAG-TATGAGATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGATTTATCA--AAAAT-GG
* * * ** ** *
502480 -GCAAAGAAAAGATTTTCCTGCAAAAGAAAATCA
124 TGGAAAGAAAAGCTTTTCTTGTGAAACCAAAGCA
* ** * * * *
502513 TCAATATCATTTATCCTAATGGGGGGAATGTGCTTATAGTGCCTAATCAC--AAAATGAATGAAG
1 TCAATATCATGTATCCTAATGAAGGAAATGTGTTTATGGTGCCTAATC-CTGAAAA-GAATGGAG
* * * * * * *
502576 ATCATTACT-AGAATCCATGTTTGTCTCATTT--GAGGCATGAACTTAGGCTTTA-CAAACAATT
64 ATTAGTA-TGAG-ATTCATGTTTGTCTTATTTAAGAGACA--AACTT-TGATTTATCAAA-AA-T
* **
502637 GGTGG---GAAAATGCCTTTCTTGTGAGGCCAAAGCA
122 GGTGGAAAGAAAA-GCTTTTCTTGTGAAACCAAAGCA
** *
502671 TCAATATCATGTATCCTAAATAGAA-GAACA--TGTTTATGGTGCCTAATCCTGAGTAGAATGGG
1 TCAATATCATGTATCCT-AAT-GAAGGAA-ATGTGTTTATGGTGCCTAATCCTGAAAAGAATGGA
*
502733 GATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAAATTTGATTCTATCAAAAATGGTG
63 GATTAGTATGAG-ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT-TATCAAAAATGGTG
* * * * *
502798 GAAAAAAAAGCCTTCCTAGTGACACCAAAGCA
126 GAAAGAAAAGCTTTTCTTGTGAAACCAAAGCA
* * * * * *
502830 TCAATGTCATGTATCCTAACGAAGGAAATGTGTTT-TAGGTTCCTAATCCTAAAAACAATGTAGA
1 TCAATATCATGTATCCTAATGAAGGAAATGTGTTTAT-GGTGCCTAATCCTGAAAAGAATGGAGA
* * * ** * * ** * * *
502894 CTATTACGAGAAACGAT-TCGTGTCTTATTTAAGGGATGAGCTTTGGTTTTATGAAAAATAGG-G
65 TTAGTATGAGATTC-ATGT-TTGTCTTATTTAAGAGACAAACTTT-GATTTATCAAAAAT-GGTG
* * * * * ** ** *
502957 CAAAGAAACGATTTCCATGCAAAAGAAAATCA
126 GAAAGAAAAGCTTTTCTTGTGAAACCAAAGCA
* * * * *
502989 TCAATATCATTTATCCTAATG-AGGAGAATGTGTTTATAGTGCCTAATCGTGAAAGGAATGAAGA
1 TCAATATCATGTATCCTAATGAAGGA-AATGTGTTTATGGTGCCTAATCCTGAAAAGAATGGAGA
* * * * * * *
503053 TCATTACTGAAATCCATGTTTGTCTCATTT--GACG-CATGAACTTAGACTTT-CCAAAAATTGG
65 TTAGTA-TGAGATTCATGTTTGTCTTATTTAAGA-GACA--AACTTTGA-TTTATCAAAAA-TGG
* * * * * *
503114 TGGTAA-AAATGCCTTTCTTGCGAAACGAAAACA
124 TGGAAAGAAAAGCTTTTCTTGTGAAACCAAAGCA
* * *
503147 TCAATATCGTGTATCCTAATG-A-GAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGG
1 TCAATATCATGTATCCTAATGAAGGAA-A-TGTGTTTATGGTGCCTAATCCTGAAAAGAATGGAG
* * * * * *
503210 ATTAGTTTGACCATTCATGTTTGTCTTATTTAAGGGACAAACTTTGATTCCATTAAAAACGGTGG
64 ATTAGTATGA-GATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT-TATCAAAAATGGTGG
*
503275 AAAGAAAAGCTTTTCTTGTGACACCAAAGCA
127 AAAGAAAAGCTTTTCTTGTGAAACCAAAGCA
* * * * * * * * * * *
503306 TCAATGTCGTGTATCATATTGAAGGGAATTTGTTTTTGGTACCCAATCTTGAAAAGAATGGAGAC
1 TCAATATCATGTATCCTAATGAAGGAAATGTGTTTATGGTGCCTAATCCTGAAAAGAATGGAGAT
* * * ** * * ***
503371 TATTACGAGAATCGATGCTTT-TCTTA--T-AG-GATGAACTATGATTTTATGAAAAATAAAGGC
66 TAGTATGAGATTC-ATG-TTTGTCTTATTTAAGAGACAAACTTTGA-TTTATCAAAAATGGTGG-
* * * ** ** *
503431 AAAGAAAAGATTTCCATGCAAAAGAAAATCA
127 AAAGAAAAGCTTTTCTTGTGAAACCAAAGCA
* * * ** * * *
503462 TCAATATCATTTATCGTAATGCA-GAGAATGTACTTATAGTGCCTAATCAC--AAAGTGAATGAA
1 TCAATATCATGTATCCTAATGAAGGA-AATGTGTTTATGGTGCCTAATC-CTGAAA-AGAATGGA
* * * ** *
503524 GATCATTACT-AGAATCCATGTTTGTCTTATTT--GACGCACAAACTTAAACTTTA-CAAAAGTT
63 GATTAGTA-TGAG-ATTCATGTTTGTCTTATTTAAGA-G-ACAAACTTTGA-TTTATCAAAA-AT
* * * *
503585 GG-GCAAA-AAAATGCCTTTCTTGCGAAACCAAAACA
122 GGTGGAAAGAAAA-GCTTTTCTTGTGAAACCAAAGCA
* * * * * * *
503620 TCACTATCGTGTATCCTACT-AAGAAAAATATGTTTATGGCGCCTAATCCTGAAAAGAATGGGGA
1 TCAATATCATGTATCCTAATGAAG-GAAATGTGTTTATGGTGCCTAATCCTGAAAAGAATGGAGA
* * * *
503684 TTAGTATGAGTACTCATGTTTGTCTCATTTAGGAGACAAACTTTCATTCTATCAAAAATGGTGGA
65 TTAGTATGAG-ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT-TATCAAAAATGGTGGA
* *
503749 AAGAAAAGCTTTTCTTGCGACACCAAAGCA
128 AAGAAAAGCTTTTCTTGTGAAACCAAAGCA
* * * * * * * * * * *
503779 TCAATGTCATGTATCCTATTGAAGGGACTGCGTTTTTGGCTCCCGAA-CTTGAACAGAGTGGAGA
1 TCAATATCATGTATCCTAATGAAGGAAATGTGTTTATGG-TGCCTAATCCTGAAAAGAATGGAGA
* * * * ** *** *
503843 TT-GTTATGAGAATCGTTGCTTGTCTTATTTAAGGGATGAACTTTGAATTTAAGGAAAATAAG-G
65 TTAG-TATGAGATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTG-ATTTATCAAAAAT-GGTG
* * * ** ** ** *
503906 CAAAGAAAAGATTTCCACGCAAAAGAAAATCA
126 GAAAGAAAAGCTTTTCTTGTGAAACCAAAGCA
* * * *
503938 TCAATATCATTTCTCCTAAT-AAGG-AATGT-TGTTATAGTGCCTAATCAC--AAAATGAATGAA
1 TCAATATCATGTATCCTAATGAAGGAAATGTGT-TTATGGTGCCTAATC-CTGAAAA-GAATGGA
* * * * *
503998 GATCATTACT-AGAATCCATGTTTGTCTCATTTAAG-G-CATGAACTTCGAGTTT-TCAAAAATT
63 GATTAGTA-TGAG-ATTCATGTTTGTCTTATTTAAGAGACA--AACTTTGA-TTTATCAAAAA-T
* * * *
504059 GGTGGGAAA-AATA-CCTTTCTTGTGAAACGAAAGCC
122 GGT-GGAAAGAAAAGCTTTTCTTGTGAAACCAAAGCA
* * * *
504094 TCAATGTCGTGTATCCTAATGAGAAGAACA--TGTTTATTGTGCCTAATCCTGAAAAGAATGG-G
1 TCAATATCATGTATCCTAATGA-AGGAA-ATGTGTTTATGGTGCCTAATCCTGAAAAGAATGGAG
* *
504156 CATTAGTATGAGTATTCTTGTTTGTCTTCTTTAAGAGACAAACTTTGATTCTATCAAAAATGGTG
64 -ATTAGTATGAG-ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT-TATCAAAAATGGTG
504221 GAAAGAAAAGCTTTTCTTGTGACAA-CAAAGCA
126 GAAAGAAAAGCTTTTCTTGTGA-AACCAAAGCA
* * * * * *
504253 TCAATGTCATGTATCCTATTGAAAGG-AATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAG-
1 TCAATATCATGTATCCTAATG-AAGGAAATGTGTTTATGGTGCCTAATCCTGAAAAGAATGGAGA
* * * * ** * * *
504316 TCT-GTAATGAGAATCAATGCTTGCCTTATTTAAGCGATGAACATTGATTTTATTGAAAATTGG-
65 T-TAGT-ATGAGATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGA-TTTA-TCAAAAATGGT
* * * * * *
504379 GAAAAGAAAAGATTTTCATG-CATAA-GAAATTCA
125 GGAAAGAAAAGCTTTTCTTGTGA-AACCAAA-GCA
* * ** * *
504412 TCAATATCATTTATCCTATTG-AGGAGAATGTACTTATAGTGCCTAATCAC--AAAATGAATGAA
1 TCAATATCATGTATCCTAATGAAGGA-AATGTGTTTATGGTGCCTAATC-CTGAAAA-GAATGGA
* ** * * *
504474 G-TTCATTACCAGAATCCATGTTTGTCTCATTT--GATG-CATGAACTTAGACTTTA-CAAAAAT
63 GATT-AGTATGAG-ATTCATGTTTGTCTTATTTAAGA-GACA--AACTTTGA-TTTATCAAAAA-
* * * * *
504534 TGGTGGGAA-AAATGCCTATCTTGTGAAACCAAAACA
121 TGGTGGAAAGAAAAGCTTTTCTTGTGAAACCAAAGCA
* ** * * *
504570 TCAACATCGCGTATCCTAATGTGAA-G-ACTGTGTTTAT-GTCGCCTAATCCTGTAAAGAATGGG
1 TCAATATCATGTATCCTAA--TGAAGGAAATGTGTTTATGGT-GCCTAATCCTGAAAAGAATGGA
* * *
504632 GATTAGTATGACTATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGGT-
63 GATTAGTATGA-GATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT-TATCAAAAATGGTG
*
504696 TAAAGGAAAAGCTTTTCTTG
126 GAAA-GAAAAGCTTTTCTTG
504716 CGATGCCAAT
Statistics
Matches: 3356, Mismatches: 1010, Indels: 737
0.66 0.20 0.14
Matches are distributed among these distances:
153 2 0.00
154 9 0.00
155 110 0.03
156 296 0.09
157 417 0.12
158 877 0.26
159 1194 0.36
160 317 0.09
161 117 0.03
162 16 0.00
163 1 0.00
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.31
Consensus pattern (157 bp):
TCAATATCATGTATCCTAATGAAGGAAATGTGTTTATGGTGCCTAATCCTGAAAAGAATGGAGAT
TAGTATGAGATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTATCAAAAATGGTGGAAAG
AAAAGCTTTTCTTGTGAAACCAAAGCA
Found at i:503092 original size:476 final size:476
Alignment explanation
Indices: 499822--505108 Score: 6727
Period size: 476 Copynumber: 11.2 Consensus size: 476
499812 GTATGAGTAT
* **
499822 TCAATATCGTGTATCCTAAAT-A-AATGAACATGTTTATGGTGCCTAATCCTGAAAAAAAAAGGG
1 TCAATATCGTGTATCCT-AATGAGAA-GAACATGTTTATGGTGCCTAATCCTGAAAAGAATGGGG
* * * *
499885 ATTAGTCTAAGTATTCATATTTGCCTTATTTAAGAGACAAACTTTTGATTCTATCAAAAACGGTG
64 ATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAAC-TTTGATTCTATCAAAAACGGTG
* * * ** *
499950 GAAAGAAAAGCGTTTCTTGCGACACCAAAGCCTCAATGTTGTGTATCCTATTGAAGTGAATGTGT
128 GAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGT
* * * * *
500015 TTTTGGTACCCAATCTTGAAAAGATTGGAGATTGTTACGAGTATCGATGCTTGTCTTTTTTAAGG
193 TTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGG
** * * **
500080 GATGAACTTTGATTTTAGGTTTAATATAGGGCAAAGAAAAGATTTTGATAG-AAAAGAAAATCAT
258 GATGAACTTTGATTTTA--TGAAAAATAAGGCAAAGAAAAGATTTCCAT-GCAAAAGAAAATCAT
*
500144 CAATATCATTTATCCTAATGAGGAGAATGTGCTTACAGTGCCTAATCACAAAATGAATGAAGATC
320 CAATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATC
* * *
500209 ATTACTAGAATCCATGTTTGTCTCATTTGACGCACGAACTTAAACTTTACAAAAATTAGTGGGAA
385 ATTACTAGAATCCATGTTTGTCTCATTTGACGCATGAACTTAGACTTTACAAAAATTGGTGGGAA
* * * **
500274 AAATACCTTTCTTACAAAAAAAAAACA
450 AAATGCCTTTCTTGCGAAACCAAAACA
* * * *
500301 TCAATATCGTGTATCCTAATGAGAAGAGCAAT-TTTATGGTGCCTGATTCTGAAAATAATGGGGA
1 TCAATATCGTGTATCCTAATGAGAAGAAC-ATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGA
*
500365 TTAGTAT-ATGCATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGG
65 TTAGTATGA-GTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGG
* * * * * *
500429 AAGGAAAAGCTTTCCTTGTGACACCAAAGCATCAATGTCAAGTGTCCTATTGATGGGATTGTGTT
129 AAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTT
* * * * ** *
500494 TTTGGCTCCCAATCTTGAAAACAATGGAGATTGTTACAAGAATCGATGCTCATCTTTATTTAGGG
194 TTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTC-TTATTTAAGG
** * * * *
500559 GATGAACTTCAATTTTATGGAAAATAAGGCAAAGAAAACATTTTCATGCAGAAGAAAATCATCAA
258 GATGAACTTTGATTTTATGAAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAA
* * * *
500624 TATCATTTCTCCTAATGA-G-TAATGTGCTGATAGTGCTTAATCACAAAATGAATGAAGATC-TT
323 TATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATT
* * * * * *
500686 CAATAGAATCCTTGTTTGTGC-CATTGGAGGCATGAACTTAGACTTTACAACAACTGGTGGGAAA
388 -ACTAGAATCCATGTTTGT-CTCATTTGACGCATGAACTTAGACTTTACAAAAATTGGTGGGAAA
* * *
500750 AATGCGTTTCTTGC-AATGCCAAAGCA
451 AATGCCTTTCTTGCGAA-ACCAAAACA
* * ** * *
500776 TCAATCTCGCGTATCCTAAAT-AGAAGAACATGTTTATTATGCCTAATCCTGAGAAGAATAGGGA
1 TCAATATCGTGTATCCT-AATGAGAAGAACATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGA
* * * ***
500840 TTACTATGAGTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTAACAAAAACGGCAAA
65 TTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGA
* *
500905 AAGAAAAGCATTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGG-ATAGTGTT
130 AAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAAT-GTGTT
* * * *
500969 TTTGGCTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTGTTCTTTAAGGG
194 TTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGG
* * *
501034 ATGAACTTTGATTTTAAGGAAAATAAGGTAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAAT
259 ATGAACTTTGATTTTATGAAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAAT
*
501099 ATCATTGATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
324 ATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
* * *
501164 CTAGAATCTATGTTTGTCTCATTTGAGGCATGAGCTTAGACTTTACAAAAATTGGTGGGAAAAAT
389 CTAGAATCCATGTTTGTCTCATTTGACGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAT
** *
501229 GCCTTTCTTATG-AACCAACACA
454 GCCTTTCTTGCGAAACCAAAACA
* *
501251 TCAATATCGCGTATCCTAATGAGAAG-ACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGA
1 TCAATATCGTGTATCCTAATGAGAAGAAC-ATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGA
* * * *
501315 TTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGTTTCCATCAAAAACGAT-GA
65 TTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGA
*
501379 TAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATTTGTT
130 -AAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTT
* * * * * * *
501444 TCTGGTACCCAATCTTGAAAAGAATGGAGACTATTACAAAAATCGATGCTTATTTTATTTAAGGG
194 TTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGG
*
501509 ATTAACTTTGA---T-TGAAAAATAAGGACAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAA
259 ATGAACTTTGATTTTATGAAAAATAAGG-CAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAA
* *
501570 TATCATTTATCCTAATGAGGAGAATGTGCTTATTGTGCCTAATCACAAAATGAACGAAGATCATT
323 TATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATT
* * * * * * **
501635 ACTAGATTTCCATGTTTTTCTCATTTGAGGCACGAACTTAAACTTTACGAAAATTGGGTGAAAAA
388 ACTAGA-ATCCATGTTTGTCTCATTTGACGCATGAACTTAGACTTTACAAAAATT-GGTGGGAAA
501700 AATGCCTTTCTTGC-AATACCAAAACA
451 AATGCCTTTCTTGCGAA-ACCAAAACA
* *
501726 TCAATATCATGTATCCTAATGAGAAGAACAAGTTTATGGTGCCTAATCCT-AGAAA-AAT-GGGA
1 TCAATATCGTGTATCCTAATGAGAAGAACATGTTTATGGTGCCTAATCCTGA-AAAGAATGGGGA
* * * * * * *
501788 TTAGTATAAGTACTCATGTTTGCCTTATTTAAGTGACAAGCTTTGATTTTATCAAAAACGATGGA
65 TTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGA
* * * *
501853 AAGAAAAGCTTTCCTTGTGACACCAAAGCATGAATGTCGTGTATCCTATTAAAGGGAATGTGTTT
130 AAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTT
* * * * * * * *
501918 TTGGTACCTAATCTTGAAAAGAGTAGAGATTGTTATGAGAAACGATGCTTCTCTTATTTAAGGGA
195 TTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGA
* ** *
501983 TGAACTTTGATTTTA-AAGAAAATAAGGCAAAGAAAAGATTTTGATACAAAAGAAAATCATCAAT
260 TGAACTTTGATTTTATGA-AAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAAT
* * *
502047 ATCATTTATCCTAATAAGGAGAATGTACTTATAGTGCCTAATCACAAAATGAATGAAGACCATTA
324 ATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
* * * *
502112 CTAGAATCCATATTTGTCTCATTTGACGCATGAACTTAAACTTTACAAAAATTGGTAGGAAAGAT
389 CTAGAATCCATGTTTGTCTCATTTGACGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAT
* *
502177 GACTTTCTTGCGAAACCAAAATA
454 GCCTTTCTTGCGAAACCAAAACA
* * *
502200 TCAATATTGTGTATCCTAATGAGAA-AACATATTTATGGTGCCTAATCCTAAAAAGAATGGGGAT
1 TCAATATCGTGTATCCTAATGAGAAGAACATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGAT
* * ** *
502264 TAGTATGTGTATTCATGTTTTTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATAGTCGAA
66 TAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAA
* * * **
502329 AGAAAAGCTTTCCTTGCGACACCAAAGCGTCAATGTCATGTATCCTATTGAA---TCTGTGTTTT
131 AGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTT
* * * * *
502391 TGGCTCCCAATCTGGAAAACAAAGGAGAATGTTACGAGAATCGATGCTTGTCTTATTT-AGGGAT
196 TGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGAT
* *
502455 GAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCC-TGCAAAAGAAAATCATCAATA
261 GAACTTTGATTTTATGAAAAATAAGGCAAAGAAAAGA-TTTCCATGCAAAAGAAAATCATCAATA
* *
502519 TCATTTATCCTAATGGGGGGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC
325 TCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC
* *
502584 TAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGGCTTTACAAACAATTGGTGGG-AAAAT
390 TAGAATCCATGTTTGTCTCATTTGACGCATGAACTTAGACTTTACAAA-AATTGGTGGGAAAAAT
* ** *
502648 GCCTTTCTTGTGAGGCCAAAGCA
454 GCCTTTCTTGCGAAACCAAAACA
* **
502671 TCAATATCATGTATCCTAAAT-AGAAGAACATGTTTATGGTGCCTAATCCTGAGTAGAATGGGGA
1 TCAATATCGTGTATCCT-AATGAGAAGAACATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGA
* *
502735 TTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAAATTTGATTCTATCAAAAATGGTGGA
65 TTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGA
* * * * ** *
502800 AAAAAAAGCCTTCCTAGTGACACCAAAGCATCAATGTCATGTATCCTAACGAAGGAAATGTGTTT
130 AAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTT
* * * * * * * * * *
502865 TAGGTTCCTAATCCTAAAAACAATGTAGACTATTACGAGAAACGATTCGTGTCTTATTTAAGGGA
195 TTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGA
* * * *
502930 TGAGCTTTGGTTTTATGAAAAATAGGGCAAAGAAACGATTTCCATGCAAAAGAAAATCATCAATA
260 TGAACTTTGATTTTATGAAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATA
* *** *
502995 TCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCGTGAAAGGAATGAAGATCATTAC
325 TCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC
* *
503060 T-GAAATCCATGTTTGTCTCATTTGACGCATGAACTTAGACTTTCCAAAAATTGGTGGTAAAAAT
390 TAG-AATCCATGTTTGTCTCATTTGACGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAT
*
503124 GCCTTTCTTGCGAAACGAAAACA
454 GCCTTTCTTGCGAAACCAAAACA
503147 TCAATATCGTGTATCCTAATGAGAAG-ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGA
1 TCAATATCGTGTATCCTAATGAGAAGAAC-ATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGA
* ** * * *
503211 TTAGTTTGACCATTCATGTTTGTCTTATTTAAGGGACAAACTTTGATTCCATTAAAAACGGTGGA
65 TTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGA
* * *
503276 AAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCGTGTATCATATTGAAGGGAATTTGTTT
130 AAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTT
* * *
503341 TTGGTACCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCGATGCTTTTCTTA--T-A-GGA
195 TTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGA
*
503402 TGAACTATGATTTTATGAAAAATAAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAAT
260 TGAACTTTGATTTTATGAAAAAT-AAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAAT
* * *
503467 ATCATTTATCGTAATGCA-GAGAATGTACTTATAGTGCCTAATCACAAAGTGAATGAAGATCATT
324 ATCATTTATCCTAATG-AGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATT
* ** * * **
503531 ACTAGAATCCATGTTTGTCTTATTTGACGCACAAACTTAAACTTTACAAAAGTTGG-GCAAAAAA
388 ACTAGAATCCATGTTTGTCTCATTTGACGCATGAACTTAGACTTTACAAAAATTGGTG-GGAAAA
503595 ATGCCTTTCTTGCGAAACCAAAACA
452 ATGCCTTTCTTGCGAAACCAAAACA
* * * * * *
503620 TCACTATCGTGTATCCTACTAAGAAAAATATGTTTATGGCGCCTAATCCTGAAAAGAATGGGGAT
1 TCAATATCGTGTATCCTAATGAGAAGAACATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGAT
* * * * *
503685 TAGTATGAGTACTCATGTTTGTCTCATTTAGGAGACAAACTTTCATTCTATCAAAAATGGTGGAA
66 TAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAA
* * *
503750 AGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGACTGCGTTTT
131 AGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTT
* * * * * *
503815 TGGCTCCCGAA-CTTGAACAGAGTGGAGATTGTTATGAGAATCGTTGCTTGTCTTATTTAAGGGA
196 TGGTTCCC-AATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGA
* * * *
503879 TGAACTTTGAATTTAAGGAAAATAAGGCAAAGAAAAGATTTCCACGCAAAAGAAAATCATCAATA
260 TGAACTTTGATTTTATGAAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATA
* *
503944 TCATTTCTCCTAAT-AAG-GAATGTTG-TTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
325 TCATTTATCCTAATGAGGAGAATG-TGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
* * * * *
504006 CTAGAATCCATGTTTGTCTCATTTAAGGCATGAACTTCGAGTTTTCAAAAATTGGTGGGAAAAAT
389 CTAGAATCCATGTTTGTCTCATTTGACGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAT
* * * * *
504071 ACCTTTCTTGTGAAACGAAAGCC
454 GCCTTTCTTGCGAAACCAAAACA
* * *
504094 TCAATGTCGTGTATCCTAATGAGAAGAACATGTTTATTGTGCCTAATCCTGAAAAGAATGGGCAT
1 TCAATATCGTGTATCCTAATGAGAAGAACATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGAT
* * *
504159 TAGTATGAGTATTCTTGTTTGTCTTCTTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAA
66 TAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAA
* *
504224 AGAAAAGCTTTTCTTGTGACAACAAAGCATCAATGTCATGTATCCTATTGAAAGGAATGTGTTTT
131 AGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTT
* * * * * *
504289 TGGTTCCCAATCTTGAAAAGAATGGAGTCTGTAATGAGAATCAATGCTTGCCTTATTTAAGCGAT
196 TGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGAT
* ** * * * *
504354 GAACATTGATTTTATTG-AAAATTGGGAAAAGAAAAGATTTTCATGCATAAGAAATTCATCAATA
261 GAACTTTGATTTTA-TGAAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATA
* * *
504418 TCATTTATCCTATTGAGGAGAATGTACTTATAGTGCCTAATCACAAAATGAATGAAGTTCATTAC
325 TCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC
* *
504483 CAGAATCCATGTTTGTCTCATTTGATGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATG
390 TAGAATCCATGTTTGTCTCATTTGACGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATG
* *
504548 CCTATCTTGTGAAACCAAAACA
455 CCTTTCTTGCGAAACCAAAACA
* * * * *
504570 TCAACATCGCGTATCCTAATGTGAAG-ACTGTGTTTAT-GTCGCCTAATCCTGTAAAGAATGGGG
1 TCAATATCGTGTATCCTAATGAGAAGAAC-ATGTTTATGGT-GCCTAATCCTGAAAAGAATGGGG
* * * * *
504633 ATTAGTATGACTATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGGT-T
64 ATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGG
* * * *
504697 AAAGGAAAAGCTTTTC-T-TG----CGATGC--CAATGTCAAGTATCCTATTGATGGGAATGTGT
129 AAA-GAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGT
* * * *
504754 TTTTGGTTCCCAATCTTGAAAATAATGGAGACTGTAACAAGAATCGATGCTTGCCTTATTTAAGG
193 TTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGG
* * *
504819 GATGAACTTTGATTTTAT-AGAAAATAGGGCAATGAAAAGATTTCCATGCGAAAA-AAATTCATC
258 GATGAACTTTGATTTTATGA-AAAATAAGGCAAAGAAAAGATTTCCATGC-AAAAGAAAATCATC
* * * *
504882 AATATCATTTATCCTAATGAGAAGAATGTGCTTATAGTGTCTAATCACAGAATGAATGAAGATCT
321 AATATCATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCA
* *
504947 TTACTAGAATCCATATTTGTCTCATTTTACGCATGAACTTAGACTTTACAAAAATTGGTGGGAAA
386 TTACTAGAATCCATGTTTGTCTCATTTGACGCATGAACTTAGACTTTACAAAAATTGGTGGGAAA
** *
505012 AATGCCAATCTTGTGAAACCAAAACA
451 AATGCCTTTCTTGCGAAACCAAAACA
* * ** *
505038 TCAATATC-TCATATCCTAACGAGAAG-ATGTGTTTATGGTGCCTAATCC-GAAAAGAACGGGGA
1 TCAATATCGT-GTATCCTAATGAGAAGAACATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGA
505100 TTAGTATGA
65 TTAGTATGA
505109 ATTTGTCAGA
Statistics
Matches: 4186, Mismatches: 543, Indels: 171
0.85 0.11 0.03
Matches are distributed among these distances:
466 21 0.01
467 18 0.00
468 305 0.07
469 3 0.00
470 4 0.00
471 214 0.05
472 337 0.08
473 630 0.15
474 584 0.14
475 842 0.20
476 903 0.22
477 89 0.02
478 126 0.03
479 106 0.03
480 4 0.00
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.31
Consensus pattern (476 bp):
TCAATATCGTGTATCCTAATGAGAAGAACATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGAT
TAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAA
AGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTT
TGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGAT
GAACTTTGATTTTATGAAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATAT
CATTTATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACT
AGAATCCATGTTTGTCTCATTTGACGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGC
CTTTCTTGCGAAACCAAAACA
Found at i:509428 original size:21 final size:19
Alignment explanation
Indices: 509362--509435 Score: 87
Period size: 19 Copynumber: 3.7 Consensus size: 19
509352 CTACCAGTTT
*
509362 CATGTATCGGTACAATTGAG
1 CATGTATCGATACAA-TGAG
*
509382 TATGTATCGATACAATGAG
1 CATGTATCGATACAATGAG
509401 CATGTATCGATACAAT-AG
1 CATGTATCGATACAATGAG
509419 CATAATGTATCGATACA
1 C---ATGTATCGATACA
509436 TCTGGGTGTG
Statistics
Matches: 48, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
18 3 0.06
19 19 0.40
20 13 0.27
21 13 0.27
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (19 bp):
CATGTATCGATACAATGAG
Found at i:510475 original size:159 final size:158
Alignment explanation
Indices: 509874--519415 Score: 1806
Period size: 159 Copynumber: 60.1 Consensus size: 158
509864 AGGGAATGTG
* * ** * *
509874 TTATTTAAGAGACAAACTTTGAATCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGTGACACC
1 TTATTTAAGAGACAAACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACC
* * * * *
509939 AAAGTATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGCT-CCCAATCTTGAAAAGAA
66 AAAGCATCAATATCATGTATCCTATTGAAAGAAATGTGTTTTTGG-TGCCTAATCTTGAAAAGAA
* * *
510003 CGGAGATT-GTTACGAGAATCGATGCTTGTC
130 TGGAGATTAG-TACGAGATTC-ATGTTTGTC
* ** *** * * * * * *
510033 TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGG-GCAAAAAAAAGATTTCCATGC-AAAA
1 TTATTTAAGAGACAAACTTTGATTTTATCAAAAAT-GGTGGAAAGAAAAGCTTTTCTTGCGAAAC
* * * * * * * **
510096 AAAATCATCAATATCATTTATCCTATTG-AGGAAAATGTGTTTATAGTACCTAAT-TACAAAATG
65 CAAAGCATCAATATCATGTATCCTATTGAAAG-AAATGTGTTTTTGGTGCCTAATCTTGAAAA-G
* * * * * *
510159 AAAGAAGATCT-TTACTAGAATCCATGTTTATC
128 AATGGAGAT-TAGTACGAG-ATTCATGTTTGTC
* * * ** * * * * * **
510191 TTATTTCAG-GCACGAACTTAGACATTA-CAGAAATTGATGGGAA-AAATGCCTTTCTTGAAAAA
1 TTATTTAAGAG-ACAAACTTTGATTTTATCA-AAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAA
* * * * * * *
510253 CTAAAGTATCAATATCGTGTATCCTATTGAGAAGACCA--TGTTTATGGTGCCTAATCGTAAAAA
64 CCAAAGCATCAATATCATGTATCCTATTGA-AAGA-AATGTGTTTTTGGTGCCTAATCTTGAAAA
* * *
510316 AAATGGAGATTAGTAAGAGTATTCATGTCTGTC
127 GAATGGAGATTAGTACGAG-ATTCATGTTTGTC
* * * *
510349 TTATTTAAGAGACAAACTTTGATTCTACCAAAAATGGTGGAAAGAAAAGTTTTTCTTGCGACACC
1 TTATTTAAGAGACAAACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACC
* * * * *
510414 AAAGCATCAATGTCATATATCTTATTGAAAGAAAAGTGTTTTTGGTTCCTAATCTTGAAAA-AAG
66 AAAGCATCAATATCATGTATCCTATTGAAAGAAATGTGTTTTTGGTGCCTAATCTTGAAAAGAA-
* * * *
510478 TGGAGATTATTACGAGAATCAATGCTTATC
130 TGGAGATTAGTACGAGATTC-ATGTTTGTC
* ** *** * * * * *
510508 TTATTTAAAAGATGAACTTTGATTTTAAGGAAAATAAG-GCAAAGAAAAGATTTTCATGCAAAAA
1 TTATTTAAGAGACAAACTTTGATTTTATCAAAAAT-GGTGGAAAGAAAAGCTTTTCTTGC--GAA
** * * * * * * * **
510572 AAAAAATCATCAATATCGTTTATCCTAATGAAA-AGAATGTGCTTATAGCGTG--TAGTC-ACAA
63 ACCAAAGCATCAATATCATGTATCCTATTGAAAGA-AATGTG-TTTTTG-GTGCCTAATCTTGAA
* * * * * *
510633 AATTAATGAAGATCATTACTAGAATCTATGTTTGTC
125 AA-GAATGGAGATTAGTACGAGATTC-ATGTTTGTC
* * * * * * * *
510669 TCATTTGAG-GCACGAACTTAGACTTT-TCAAAAATTGGTGGGAA-AAATGCCTTTCTTGCGAAA
1 TTATTTAAGAG-ACAAACTTTGATTTTATCAAAAA-TGGTGGAAAGAAAAGCTTTTCTTGCGAAA
** * * *
510731 CCAAAGCATCAATATTGTGTATCCTAATGAGAAGAACA--TGTTTATGGTGCCTAATCCTGAAAA
64 CCAAAGCATCAATATCATGTATCCTATTGA-AAGAA-ATGTGTTTTTGGTGCCTAATCTTGAAAA
* * *
510794 GAATGGGGATTAGTATGAGTATTCATGTTTGCC
127 GAATGGAGATTAGTACGAG-ATTCATGTTTGTC
* * * * *
510827 TTATTTAAGAGATAGACTTTG-TTTCTATCGAAAATGGTGGAAAGAAAAACTTTTCTTGCGACAC
1 TTATTTAAGAGACAAACTTTGATTT-TATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAAC
* ** * * * * * * *
510891 CAAAGCATCAATGTTGTGAATCCTATTGAAGGGAAA-GTGTTTTAGGTACCAAATCCTGAAAATA
65 CAAAGCATCAATATCATGTATCCTATTGAA-AGAAATGTGTTTTTGGTGCCTAATCTTGAAAAGA
* * *
510955 ATGGAGACT-GCTACGAGAATCGATGCTTGTC
129 ATGGAGATTAG-TACGAGATTC-ATGTTTGTC
* ** * * * * * *
510986 TTATTTAAGGGATGAACTTTGATTATA-GAGGAAAAT-ATGGCAAAGAAAAG-ATATCGATGCGA
1 TTATTTAAGAGACAAACTTTGATTTTATCA--AAAATGGTGG-AAAGAAAAGCTTTTC-TTGCGA
* * * * * * *
511048 CACCAAGGCATCAATGTCATGTATCCTATTGAAGGGAATGTGCTTTTGGCT-CCCAATCTTGAAA
62 AACCAAAGCATCAATATCATGTATCCTATTGAAAGAAATGTGTTTTTGG-TGCCTAATCTTGAAA
* * *
511112 AGAATGGAGATT-GTTAGGAGAATCGATGCTTGTC
126 AGAATGGAGATTAG-TACGAGATTC-ATGTTTGTC
* ** *** * * * * * *
511146 TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGG-GCAAAGAAAAGATTTCCATGCAAAAG
1 TTATTTAAGAGACAAACTTTGATTTTATCAAAAAT-GGTGGAAAGAAAAGCTTTTCTTGCGAAAC
* * * * ** * * **
511210 AAAATCATCAATATCATTTATCCTAATGTG-GAG-AATGTACTTATAGTGCCTAATC-ACAAAAT
65 CAAAGCATCAATATCATGTATCCT-AT-TGAAAGAAATGTGTTTTTGGTGCCTAATCTTGAAAA-
* * * * * *
511272 GAATGAAGATCATTACTAGAATCCATGTTTGCC
127 GAATGGAGATTAGTACGAG-ATTCATGTTTGTC
* * * * * * ** * * * *
511305 TCATTT-GGGGCATGAAAC-TAGACTTTAAAAAAAATGGAGGGAA-AAATGCCTTTCTTGCGAAA
1 TTATTTAAGAG-A-CAAACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAA
* * * * ** *
511367 CCAAAACATCACTATCGTGTATCCTAAT--AAGAAGGCCGTGTTTATGGTGCCTAATCTTGAAAA
64 CCAAAGCATCAATATCATGTATCCTATTGAAAGAA--ATGTGTTTTTGGTGCCTAATCTTGAAAA
* * * *
511430 GAATTGG-GATTAGCATGACTATTCTTGTTTGTC
127 GAA-TGGAGATTAGTACGA-GATTCATGTTTGTC
** * *
511463 TTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAATGAAAAGCTTTTCTTGC-AAACC
1 TTATTTAAGAGACAAACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAA--
* * * *
511527 CCAAAGCATCAATATCATGTATCCTATTGAAGGGAATGTGTTTTTGGCT-CCCAATCTTGAAAGG
64 CCAAAGCATCAATATCATGTATCCTATTGAAAGAAATGTGTTTTTGG-TGCCTAATCTTGAAAAG
* * *
511591 AATGGAGATT-GTTAGGAGAATCGATGCTTGTC
128 AATGGAGATTAG-TACGAGATTC-ATGTTTGTC
* ** *** * * * ** *
511623 TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGG-GCAAAGAAAAGATTTTCATGTAAAAG
1 TTATTTAAGAGACAAACTTTGATTTTATCAAAAAT-GGTGGAAAGAAAAGCTTTTCTTGCGAAAC
* * * * * * ** * * * **
511687 AAAATCATCAATATCGTTTACCCTAATG-AAGAGAATGTACTTATAGTGCCTTATC-ACAAAATG
65 CAAAGCATCAATATCATGTATCCTATTGAAAGA-AATGTGTTTTTGGTGCCTAATCTTGAAAA-G
* * * * * * *
511750 AAAGAAGATCATTACTAGAATCCATGTTTGTG
128 AATGGAGATTAGTACGAG-ATTCATGTTTGTC
* * * * * * * * * *
511782 TCATTT-AG-GGCATGAAATTAGACTTTA-CAAAAAATGGAGGGAA-AAATGCCTTTCTTACGAA
1 TTATTTAAGAGACA--AACTTTGATTTTATC-AAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAA
* * * * * * * * *
511843 ACCAAAACATGAATGTCGTGTATCCTAATGAGAAG-ACTGTGTTTATGGTGCCTAATCCTAAAAA
63 ACCAAAGCATCAATATCATGTATCCTATTGA-AAGAAATGTGTTTTTGGTGCCTAATCTTGAAAA
* *
511907 GAATGGGGATTAGTATGAGCATTCATGTTTGTC
127 GAATGGAGATTAGTACGAG-ATTCATGTTTGTC
** * *
511940 TTATTTAAGAGACAAACTTTGATTTTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGGGACACC
1 TTATTTAAGAGACAAACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACC
*
512005 AAAGCATCAATGTCATGTATCCTATTG-AAGAGAATGTGTTTTTGGCT-CAC-AATCTTGAAAAG
66 AAAGCATCAATATCATGTATCCTATTGAAAGA-AATGTGTTTTTGG-TGC-CTAATCTTGAAAAG
** * * **
512067 AACAGAGATT-GTTAGGAGAATCGATACTTGTC
128 AATGGAGATTAG-TACGAGATTC-ATGTTTGTC
* ** *** * * * ** *
512099 TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATGAG-GCAAAGAAAAGATTTTCATGTAAAAG
1 TTATTTAAGAGACAAACTTTGATTTTATCAAAAATG-GTGGAAAGAAAAGCTTTTCTTGCGAAAC
* * * * * * * ** *
512163 AAAATCATCAAAATCATTTATCCTATTG-AGGAGAATGTGTTTATAGTGCCTAAT-TACATAATG
65 CAAAGCATCAATATCATGTATCCTATTGAAAGA-AATGTGTTTTTGGTGCCTAATCTTGA-AAAG
* * * * * *
512226 AAAGAAGATCT-TTACTAGAATACAAGTTTGTC
128 AATGGAGAT-TAGTACGAG-ATTCATGTTTGTC
* * * ** * * * * *
512258 TCATTTGAG-GCACAAACTTAGACATTA-CAAAAATTGGTAGG-AA-AAATGCCTTCCTTTCAAA
1 TTATTTAAGAG-ACAAACTTTGATTTTATCAAAAA-TGGT-GGAAAGAAAAGCTTTTCTTGCGAA
* * * * *
512319 ACCAAAGTATCAATATCATGTATCCTATTGAGAAGACCAT-T-TTTATGGTGCCTAATCCTAAAA
63 ACCAAAGCATCAATATCATGTATCCTATTGA-AAGA-AATGTGTTTTTGGTGCCTAATCTTGAAA
* ** * *
512382 ATAATGGAGATTAGTATAATTATGCATGTTTGTC
126 AGAATGGAGATTAGTACGA-GATTCATGTTTGTC
* * *
512416 TTATTTAAGAGACAAACTTTGATTCTACCAAAAACGGTGGAAAGAAAAGCTTTTCTTGC-AACAC
1 TTATTTAAGAGACAAACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAA-AC
* * *
512480 CAAAGCATCAATGTCATGTATCCTATTGAAAGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAA
65 CAAAGCATCAATATCATGTATCCTATTGAAAGAAATGTGTTTTTGGTGCCTAATCTTGAAAAGAA
* * *
512545 TGGAGATT-GTTATGAGAATCGATGCTTGTC
130 TGGAGATTAG-TACGAGATTC-ATGTTTGTC
*** ** * ** ** * *
512575 TTATTTAAGAGTTGAACTTTGATTTTATGGAAAATAGG-GCAAAGAAAATATTTTCAGGCAAAAG
1 TTATTTAAGAGACAAACTTTGATTTTATCAAAAAT-GGTGGAAAGAAAAGCTTTTCTTGCGAAAC
* * * * * * * * * **
512639 AAAATCATCAATATCGTTTATCCTAATGAAA-AGAATGTGCTTATAGTGCCTAGTC-ACAAAATG
65 CAAAGCATCAATATCATGTATCCTATTGAAAGA-AATGTGTTTTTGGTGCCTAATCTTGAAAA-G
* * * * *
512702 AATGAAGATCATTACTAGAATCTATGTTTGTC
128 AATGGAGATTAGTACGAGATTC-ATGTTTGTC
* * * * * * *
512734 TCATTTGAG-GCACGAACTTAGACTTT-TCAAAAATTGGTGGGAAA-AATAGC-TTTCTTACGAA
1 TTATTTAAGAG-ACAAACTTTGATTTTATCAAAAA-TGGT-GGAAAGAAAAGCTTTTCTTGCGAA
* ** * * * * * *
512795 ACTAAAGCATCAATATTGTGTATCCTAATCACAAGAACT-TGTTTATGGTGCCTAGTCCTGAAAA
63 ACCAAAGCATCAATATCATGTATCCTATTGA-AAGAAATGTGTTTTTGGTGCCTAATCTTGAAAA
* * *
512859 GAATGGGGATTAGTATGAGTATTCATGTTTATC
127 GAATGGAGATTAGTACGAG-ATTCATGTTTGTC
* * *
512892 TTATTTAAGAGACAGACTTTG-TTTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCCTGCGACAC
1 TTATTTAAGAGACAAACTTTGATTT-TATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAAC
* ** * * * * * *
512956 CAAAGCATCAATGTTGTGTATCCTATTGAAGGGAATGTGTTTTAGGTTCCCAATCTTGAAAATAA
65 CAAAGCATCAATATCATGTATCCTATTGAAAGAAATGTGTTTTTGGTGCCTAATCTTGAAAAGAA
* * * *
513021 TGGAGACT-GCTATGAG-TATCGATGCTCGTC
130 TGGAGATTAG-TACGAGAT-TC-ATGTTTGTC
* ** * *** * * * * * * *
513051 TTATTTAAGGGATGAACTTTGATTATAAGGAAAATAGG-GCAAAGAAAAGATATCCATGTGACAC
1 TTATTTAAGAGACAAACTTTGATTTTATCAAAAAT-GGTGGAAAGAAAAGCTTTTCTTGCGAAAC
* * * *
513115 CAAGGCATCAATGTCATGTATCCTAATGAAAGGAAA-GTGTTTTTGGCT-CCCAATCTTGAAAAG
65 CAAAGCATCAATATCATGTATCCTATTGAAA-GAAATGTGTTTTTGG-TGCCTAATCTTGAAAAG
* *
513178 AATGGAGATT-GTTACGAGAATTGATGCTTGTC
128 AATGGAGATTAG-TACGAG-ATTCATGTTTGTC
* ** * ** * * * * * *
513210 TTATTTAAGGGATGAACTTTG-TCTCTTA--AATAA--G-ACAAACATGAA--TTCTCATCCTAA
1 TTATTTAAGAGACAAACTTTGAT-T-TTATCAAAAATGGTGGAAAGA-AAAGCTTTTCTTGCGAA
* * * * * * *** * ** ** *
513267 TCC---CCATTC-TTTTGA-GGATTAGGATAGAATCAAA-GCATTAAAATT-GTG--T-ATCCTA
63 ACCAAAGCA-TCAATATCATGTA-TCCTATTGAAAGAAATGTGTT---TTTGGTGCCTAAT-CT-
* * * * * * ******
513322 GTGAGAAGACT--ATGTTTATGGTGCCTA-A-TCCTGAAAAAA
121 -TGAAAAGAATGGA-GATTA--GT-ACGAGATTCATGTTTGTC
** ** * * * * ** * *
513361 AAATGGGGAAAAGTA-TAAGTGTTCAAGTTTT-TC--TTAT--T-TAAGAGACAAA-CTTTGATT
1 TTAT--TTAAGAG-ACAAACT-TT-GA-TTTTATCAAAAATGGTGGAA-AGA-AAAGCTTT--TC
* * * *** * * * * * * ** ** *** *
513418 TTATCAAAAACGGTGGA--AAGA-AAAGCTTTTCT-TGTGACACCAAA-GCATCAGT-GT-CATC
56 TT-GCGAAACCAAAGCATCAATATCATG-TATCCTAT-TGA-AAGAAATGTGTTTTTGGTGCCT-
** * * * * * ** *
513476 AATCCTAATGAAGGGAATGTGTTTTAGGTT-CTCAATCTAGAAAATAATG-GAGAC
116 AAT-CT--TGAAAAGAATG-G----AGATTAGT--A-C--GAGATTCATGTTTGTC
* *** ** * * * ** **
513530 TAATGCGAGA-ATCGATGCTCGTCTTATTTAAGGGATTAACTTTGATTATAAGGAAAATAGGGAA
1 TTATTTAAGAGA-C-AAACT--T-TGATTT----TATCAA---AAATGGT--GG-AA--A--GAA
** * ** * * *
513594 AAGAAAAGATTTCTAAT-CAAAAGAAAATCATCAATATCATTTATCCTAATT--AGGAGAATGTG
47 AAG----CTTTTCT--TGCGAAACCAAAGCATCAATATCATGTATCCT-ATTGAAAGA-AATGTG
* * * * * ** * * * * *
513656 CTTATAGTACCCAATC-ACAAAATGAATGAAGATCAATACCAGAATCCATGTTTGTC
104 TTTTTGGTGCCTAATCTTGAAAA-GAATGGAGATTAGTACGAG-ATTCATGTTTGTC
* * * * * * *
513712 TCATTT--GAGGCATGAACTTAGACTTTA-CAGAAATTCTTGTGG-AA-AATAGC-TTTCTT--G
1 TTATTTAAGAGACA--AACTTTGATTTTATCA-AAA--ATGGTGGAAAGAAAAGCTTTTCTTGCG
* * * * *
513769 ----CAAA--A-C-----C-TGTATCCTAATGAGAAGACCA--TGTTTATGGTGCCTAATCCTAA
61 AAACCAAAGCATCAATATCATGTATCCTATTGA-AAGA-AATGTGTTTTTGGTGCCTAATCTTGA
* * *
513819 AAAGAATGGGGATTAGTATGACAATTCAAT-TTTGTC
124 AAAGAATGGAGATTAGTACGA-GATTC-ATGTTTGTC
** * * * *
513855 TTATTTAAGAGACAAACTTTGATTCCATCAAAAACT-ATGGAAAGAAAAGCTTTTCCTACGATAC
1 TTATTTAAGAGACAAACTTTGATTTTATCAAAAA-TGGTGGAAAGAAAAGCTTTTCTTGCGAAAC
* * * * * * *
513919 CAAAGCATCAATGTTAAGTATCCTGA-AGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGA
65 CAAAGCATCAATATCATGTATCCT-ATTGAAAGAAATGTGTTTTTGGTGCCTAATCTTGAAAAGA
* * *
513983 ATGGAGATT-GTTATGAGAATCGATGCTTGTC
129 ATGGAGATTAG-TACGAGATTC-ATGTTTGTC
* * * * * ** * *
514014 TTATTTAAGGGATAAACTTTGATTTTATGAAAAATAGG-GCAAAGAAAAGATTTTCACGCAAAAG
1 TTATTTAAGAGACAAACTTTGATTTTATCAAAAAT-GGTGGAAAGAAAAGCTTTTCTTGCGAAAC
* * * * * * * * * *
514078 AAAATCATCAATAGCATTTATCCTATTGAGAAG-AATATGCTTATAGTGCCTAATCAT-AGAAAT
65 CAAAGCATCAATATCATGTATCCTATTGA-AAGAAATGTGTTTTTGGTGCCTAATCTTGA-AAAG
* * *
514141 AATGAAGATCTTTGCTA-GA-ATCCATGTTTGTC
128 AATGGAGA--TTAG-TACGAGATTCATGTTTGTC
* * * * ** * *
514173 TCATTTAAG-GCACGAACTTAGACTTTA-CAAAAAT--TGGCGAGAAAATGCCTTTCTTGTGAAA
1 TTATTTAAGAG-ACAAACTTTGATTTTATCAAAAATGGTGGAAAGAAAA-GCTTTTCTTGCGAAA
* * * * *
514234 CCAAAGCATCCATATCGTGTATCCTA---ACAAGAAGACTATGTTTATGGTGCCTAA-CCTGAAA
64 CCAAAGCATCAATATCATGTATCCTATTGA-AAGAA-A-TGTGTTTTTGGTGCCTAATCTTGAAA
* * * * * *
514295 AAAATGGGGAATAGTATGAGTATTCAAGTTTTTC
126 AGAATGGAGATTAGTACGAG-ATTCATGTTTGTC
* * * *
514329 TTATTTAAGAGACAAACTTTGATTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCTTGTGACACC
1 TTATTTAAGAGACAAACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACC
* * * * * * * ** *
514394 AAAGCATCAGTGTCATTTATCCTAAT-AAAGGGAATGTGTTTTAGGT-TCTCAATCCAGAAAATA
66 AAAGCATCAATATCATGTATCCTATTGAAA-GAAATGTGTTTTTGGTGCCT-AATCTTGAAAAGA
* * * * **
514457 ATGGAGACT-GCTATGAGAATCGATGCTCATC
129 ATGGAGATTAG-TACGAGATTC-ATGTTTGTC
* ** * *** * * * *
514488 TTATTTAAGGGATTAACTTTGATTATAAGGAAAATAGG-GAAAAGAAAAG-ATTTCTAAGCAAAA
1 TTATTTAAGAGACAAACTTTGATTTTATCAAAAAT-GGTGGAAAGAAAAGCTTTTCT-TGCGAAA
** * * * * * * * **
514551 GAAAATCTTCAATATCATTTATCCTAATT--AGGAGAATGTGCTTATAGG-ACCTAATC-ACAAA
64 CCAAAGCATCAATATCATGTATCCT-ATTGAAAGA-AATGTG-TTTTTGGTGCCTAATCTTGAAA
* * * * * *
514612 ATGAATGAAGATCAATACCAGAATCTACGTTTGTC
126 A-GAATGGAGATTAGTACGAGATTC-ATGTTTGTC
* * * * * * *
514647 TCATTTGAG-GCACGAACTTAGACTTTA-CAAAAATTCTTGTGGAAA-ATAA-C-TTTCTTGCGA
1 TTATTTAAGAG-ACAAACTTTGATTTTATCAAAAA---TGGTGGAAAGAAAAGCTTTTCTTGCGA
* * *** * * * * *
514707 ATCCAAAGCATTAATATTGCGTATCCTAATGAGAAGACCA--TGTTTATGGTGCCTAATCCTAAA
62 AACCAAAGCATCAATATCATGTATCCTATTGA-AAGA-AATGTGTTTTTGGTGCCTAATCTTGAA
* *
514770 AAGAATAGG-GATTAGTATGACAATTCAAT-TTTGTC
125 AAGAAT-GGAGATTAGTACGA-GATTC-ATGTTTGTC
* ** * ** *
514805 TTATTTAGGAGACAAACTTTGATTCCATCAAAAACT-GTGGAAAGAAAAGCTTTTCCTATGATAC
1 TTATTTAAGAGACAAACTTTGATTTTATCAAAAA-TGGTGGAAAGAAAAGCTTTTCTTGCGAAAC
* * * * ** * *
514869 CAAAGCATCAATGTTAAGTATCTTAAAGAAAGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAA
65 CAAAGCATCAATATCATGTATCCTATTGAAAGAAATGTGTTTTTGGTGCCTAATCTTGAAAAGAA
* * *
514934 TGGAGATT-GTTATGAGAATCAATGCTTGTC
130 TGGAGATTAG-TACGAGATTC-ATGTTTGTC
* ** * *** * * * * * * *
514964 TTATTTAAGGGATGAAC-TTGACTTTAAGGAAAATAGG-GCAAAGAAAAGATTTCCATACAAAAG
1 TTATTTAAGAGACAAACTTTGATTTTATCAAAAAT-GGTGGAAAGAAAAGCTTTTCTTGCGAAAC
* * * * * * **
515027 AAAATCATCAATATCATTTATCCTAATGAGAAG-AATGTGCTTATT-GTGCTTAATC-ACAAAAT
65 CAAAGCATCAATATCATGTATCCTATTGA-AAGAAATGTG-TTTTTGGTGCCTAATCTTGAAAA-
* ** * * *
515089 GAATGAAGATTTTTGCTAGAATCCATGTTTGTC
127 GAATGGAGATTAGTACGAG-ATTCATGTTTGTC
* * * * * * * * *
515122 TCATTTGAG-GCACGAACTTAGACTTTA-CAAAAATTGGCAGG-AA-AAATGCCTTTCTTGCAAA
1 TTATTTAAGAG-ACAAACTTTGATTTTATCAAAAA-TGG-TGGAAAGAAAAGCTTTTCTTGCGAA
* * * * * * * *
515183 ACCAATGCATCCATATCGTGTATCCGAAT--AAGAAACTATGTTTATGGTGCCTAATCTTGACAA
63 ACCAAAGCATCAATATCATGTATCCTATTGAAAGAAA-TGTGTTTTTGGTGCCTAATCTTGAAAA
* * * * *
515246 -AATGGGGAATAGTATGAGTATTCAAGTTTTTC
127 GAATGGAGATTAGTACGAG-ATTCATGTTTGTC
* * * *
515278 TTATTTAAGAGACCAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGTGACACC
1 TTATTTAAGAGACAAACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACC
** * * * * * * * * *
515343 AAAGCATCGGTGTCATTTATCCTAATGAAGGGAATGTGTTTTAGGT-TCTCAATCCAT-AAAATA
66 AAAGCATCAATATCATGTATCCTATTGAAAGAAATGTGTTTTTGGTGCCT-AAT-CTTGAAAAGA
* * * *
515406 ATGGAGATT-GCTACGAGAATCGAAGCTCGTC
129 ATGGAGATTAG-TACGAGATTC-ATGTTTGTC
* * ** * * *** * * * * * * * * **
515437 TCATTTAAGGGATTAACTTTAATTATAAGGAAAATAGAGAAAACAAAAGATTTCCATGCAAAAGA
1 TTATTTAAGAGACAAACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACC
* * * * * * **
515502 AAATCATCAATATCATTTATCCTAATGAGAAG-AATGTGCTTATAGTGCCTAATC-ACAAAATGA
66 AAAGCATCAATATCATGTATCCTATTGA-AAGAAATGTGTTTTTGGTGCCTAATCTTGAAAA-GA
* * * * *
515565 ATGAAGATCT-TTGCTAGAATCAATGTTTGTC
129 ATGGAGAT-TAGTACGAGATTC-ATGTTTGTC
* * * * * * * *
515596 TCATTT--GAGGCATGAACTTAGACTTTA-CAAAAATTGGCAGG-AA-AAATGCCTTTCTTGCAA
1 TTATTTAAGAGACA--AACTTTGATTTTATCAAAAA-TGG-TGGAAAGAAAAGCTTTTCTTGCGA
** * * * * *
515656 AACCAAAGCATCCTTATTATGTATCCGA---ACAAGAAGACTATGTTTATGGTGCCTAATCCTGA
62 AACCAAAGCATCAATATCATGTATCCTATTGA-AAGAA-A-TGTGTTTTTGGTGCCTAATCTTGA
* * * * * *
515718 AAAAAATGGGGAATATTATGAGTATTCAGGTTTGTC
124 AAAGAATGGAGATTAGTACGAG-ATTCATGTTTGTC
515754 TTATTTAAGAGACAAACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGC-AACAC
1 TTATTTAAGAGACAAACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAA-AC
* * * *
515818 CAAAGCATCAATGTCATGTATCCTATTGAAAGGAATGTGTTTTTGGCT-CCCAATCTTCAAAAGA
65 CAAAGCATCAATATCATGTATCCTATTGAAAGAAATGTGTTTTTGG-TGCCTAATCTTGAAAAGA
* * *
515882 ACGGAGATT-GTTACCAGAATCGATGTTTGTC
129 ATGGAGATTAG-TACGAGATTC-ATGTTTGTC
* ** *** * * ** * *
515913 TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGG-GCAAAGAAAAGATTTTCAGGCAAAAG
1 TTATTTAAGAGACAAACTTTGATTTTATCAAAAAT-GGTGGAAAGAAAAGCTTTTCTTGCGAAAC
* * * * * * * * **
515977 AAAATCATCAATATCATTTATCCTAATGAAA-AGAATGTGCTTGTAGTGCCTAGTC-ACAAAATG
65 CAAAGCATCAATATCATGTATCCTATTGAAAGA-AATGTGTTTTTGGTGCCTAATCTTGAAAA-G
* * * * *
516040 AATGAAGATCATTACTAGAATCTATGTTTGTC
128 AATGGAGATTAGTACGAGATTC-ATGTTTGTC
* * * * * * * * *
516072 TCATTTGAG-GCACGAACTTAGACTTTA-CAAAAAT--T-TAACAGGAAAAATGCCTATCTTGTG
1 TTATTTAAGAG-ACAAACTTTGATTTTATCAAAAATGGTGGAA-A-G-AAAA-GCTTTTCTTGCG
* * * * ** * * * *
516132 AAACCAAAACATCCATATCGTGTGTCCTAACGAGAAG-ACTAG-GTTTATGGTGCCAAATCCTGA
61 AAACCAAAGCATCAATATCATGTATCCTATTGA-AAGAAAT-GTGTTTTTGGTGCCTAATCTTG-
* * * *
516195 AAAAAAAATTGG-GAAT-GTTATGAGTATTCAAGTTTGTC
123 -AAAAGAA-TGGAGATTAG-TACGAG-ATTCATGTTTGTC
* * * * * * *
516233 TTTTTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAAAGAAAAGTTTTTCTTGCCACACC
1 TTATTTAAGAGACAAACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACC
* * * * *
516298 AAAGCGTCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTTCGC-AATCTTGAAAAGAA
66 AAAGCATCAATATCATGTATCCTATTGAAAGAAATGTGTTTTTGGTGC-CTAATCTTGAAAAGAA
* * * * *
516362 TGGATATT-GTTACGAG-TATCGGTGCTTATA
130 TGGAGATTAG-TACGAGAT-TC-ATGTTTGTC
* ** *** * * * * * *
516392 TTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT-ATGGCAATGAAAAG-ATTTCAATACAAAA
1 TTATTTAAGAGACAAACTTTGATTTTATCAAAAATGGTGG-AAAGAAAAGCTTTTC-TTGCGAAA
** * * * * * * * * * *
516455 TAAAATCATCAGTATCATTTATCCTAATG-AAGAGAATATGCTTATAGTTCCTAATCAT-AAAAT
64 CCAAAGCATCAATATCATGTATCCTATTGAAAGA-AATGTGTTTTTGGTGCCTAATCTTGAAAA-
* * * * * *
516518 GAATGAAGATCATTACTAGAATCCATGTTTGTG
127 GAATGGAGATTAGTACGAG-ATTCATGTTTGTC
* * * * * *
516551 TCATTT--GAGGCATGAACTTAGACTTTA-CAAAAATTGGTGGAAA-AAATGCCTTTCTTGCGAA
1 TTATTTAAGAGACA--AACTTTGATTTTATCAAAAA-TGGTGGAAAGAAAAGCTTTTCTTGCGAA
* ** * * * * * *
516612 ACCAAAACATCAATATCGCGTATCCTAGTGAGAAG-ACTATGTTTATGGTGCCAAATCCTGAAAA
63 ACCAAAGCATCAATATCATGTATCCTATTGA-AAGAAATGTGTTTTTGGTGCCTAATCTTGAAAA
* * * * ** **
516676 AAATGGGGAATAGAATAAGTATTCAAATTTGTC
127 GAATGGAGATTAGTACGAG-ATTCATGTTTGTC
* * * *
516709 TTTTTTGAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAACA-CTTTTCTTGC-AACA
1 TTATTTAAGAGACAAACTTTGATTTTATCAAAAATGGTGGAAAGAAA-AGCTTTTCTTGCGAA-A
* * * * * * * * * **
516772 ACAAAGCATCAA-AGTCATATATCTTATTGAATGGACTGCGTTTTTGACT-CCCAATCAAGAAAA
64 CCAAAGCATCAATA-TCATGTATCCTATTGAAAGAAATGTGTTTTTG-GTGCCTAATCTTGAAAA
* * *
516835 AAATGGAGATT-GTTA-GAAGAATCGATGCTTGTC
127 GAATGGAGATTAG-TACG-AGATTC-ATGTTTGTC
* ** *** * * * * * * *
516868 TTATTTAAGCGATGAACTTTGATTTTAAGGAAAATAAG-GCAAAGAAAAGATTTCCATGCAAAAG
1 TTATTTAAGAGACAAACTTTGATTTTATCAAAAAT-GGTGGAAAGAAAAGCTTTTCTTGCGAAAC
* * * * * * * * * *
516932 AAAATCAACAATTTCAT-TCATCCAATTG-AGGAGAATGTGCTTATAGTGCCTAATCAT-AAAAT
65 CAAAGCATCAATATCATGT-ATCCTATTGAAAGA-AATGTGTTTTTGGTGCCTAATCTTGAAAA-
* * * * *
516994 AAATGGAGATCATTACTAGAATCTATGTTTGTC
127 GAATGGAGATTAGTACGAGATTC-ATGTTTGTC
* * * * * * * * * * *
517027 TCATTT--GGGGCATGAAATTAGACTATA-CAAAAAATGGAGGGAA-AAAAGCCTTTCTTTCGAA
1 TTATTTAAGAGACA--AACTTTGATTTTATC-AAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAA
* * * * * * *
517088 ACCAAAACATCATTGTCGTGTATCCTAATGAGAAG-ACTGTGTTTATGGTGCCTAATC-TGAAAA
63 ACCAAAGCATCAATATCATGTATCCTATTGA-AAGAAATGTGTTTTTGGTGCCTAATCTTG-AAA
* * *
517151 AGAATCGAGATTAGTATC-ACTATTCTTGTTTGTC
126 AGAATGGAGATTAGTA-CGA-GATTCATGTTTGTC
* ** * * * * * *
517185 TTATTTAAGAGATAAACTTTGATTCCATCCAAAACGGTGGAATGAAAAGCTTTGCTTGCTACACC
1 TTATTTAAGAGACAAACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACC
* ** * * * *
517250 AAAGCATCAATATCACGTATCCTATTGATGGGAATGTGTTTTTGGTTCCCAATCTTGCAAAGAAT
66 AAAGCATCAATATCATGTATCCTATTGAAAGAAATGTGTTTTTGGTGCCTAATCTTGAAAAGAAT
** * *
517315 GGAGATTCTTATGAGAATCGATGTTTGTC
131 GGAGATTAGTACGAGATTC-ATGTTTGTC
* ** *** * * * * * *
517344 TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGG-GCAAAGAAAAGATTTCCATGCAAAAG
1 TTATTTAAGAGACAAACTTTGATTTTATCAAAAAT-GGTGGAAAGAAAAGCTTTTCTTGCGAAAC
* * * * * * * * **
517408 AAAATCATCAATATTATTTATCCTAATGAGAA-AAATGTGCTTATAGTGCCTAATC-ACAAAATG
65 CAAAGCATCAATATCATGTATCCTATTGA-AAGAAATGTGTTTTTGGTGCCTAATCTTGAAAA-G
* * * * *
517471 AATGAAGATCACTACTAGAATCCATGTTTGTC
128 AATGGAGATTAGTACGAG-ATTCATGTTTGTC
* * * * * ** * *
517503 TCATTT--GAGGCATGAACTTGGACTATA-CGAAAATTAACG-GGAAA-AATA-CCTTTCTTGCG
1 TTATTTAAGAGACA--AACTTTGATTTTATC-AAAA--ATGGTGGAAAGAAAAGCTTTTCTTGCG
* * * * * * * * * *
517562 AAACAAAATCATCCATATCATGTATCCGACTGAGAAG-ACTATGTTTATGTTGCCTAATCCTGAA
61 AAACCAAAGCATCAATATCATGTATCCTATTGA-AAGAAATGTGTTTTTGGTGCCTAATCTTGAA
* * * * * * *
517626 AAAAATGGGGAATATTATGAGTATTGAAGTTTGTC
125 AAGAATGGAGATTAGTACGAG-ATTCATGTTTGTC
* *
517661 TTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACC
1 TTATTTAAGAGACAAACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACC
* * * * * *
517726 AAAGCATCAATGTTATGTATCTTATTGAAGGGAATGTGTTTTTGGCT-CCCAATCTTGAAAAGAA
66 AAAGCATCAATATCATGTATCCTATTGAAAGAAATGTGTTTTTGG-TGCCTAATCTTGAAAAGAA
* *
517790 TGGAGATT-GTTACGAGAATCAATGCTTGTC
130 TGGAGATTAG-TACGAGATTC-ATGTTTGTC
* ** *** * * * ** *
517820 TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATGAG-GCAAAGAAAAGATTTTCATGTAAAAG
1 TTATTTAAGAGACAAACTTTGATTTTATCAAAAATG-GTGGAAAGAAAAGCTTTTCTTGCGAAAC
* * * * * * ** *
517884 AAAATCATCGAA-ATCATTTATCCTATTG-AGGAGAATGTGTTTATAGTGCCTAAT-TACATAAT
65 CAAAGCATC-AATATCATGTATCCTATTGAAAGA-AATGTGTTTTTGGTGCCTAATCTTGA-AAA
* * * * * *
517946 GAAAGAAGATCT-TTACTAGAATACAAGTTTGTC
127 GAATGGAGAT-TAGTACGAG-ATTCATGTTTGTC
* * * ** * * * *
517979 TCATTTGAG-GCACAAACTTAGACATTA-CAAAAATTGGTAGG-AA-AAATGCCTTCCTTGCAAA
1 TTATTTAAGAG-ACAAACTTTGATTTTATCAAAAA-TGGT-GGAAAGAAAAGCTTTTCTTGCGAA
* * * * *
518040 ACCAAAGTATCAATATCATGTATCCTATTGAGAAGACCAT-T-TTTATGGTGCCTAATCCTAAAA
63 ACCAAAGCATCAATATCATGTATCCTATTGA-AAGA-AATGTGTTTTTGGTGCCTAATCTTGAAA
* ** * *
518103 ATAATGGAGATTAGTATAATTATGCATGTTTGTC
126 AGAATGGAGATTAGTACGA-GATTCATGTTTGTC
* * *
518137 TTATTTAAGAGACAAACTTTGATTCTACCAAAAACGGTGGAAAGAAAAGCTTTTCTTGC-AACAC
1 TTATTTAAGAGACAAACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAA-AC
* * * * *
518201 CAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGCT-CCCAATCATGAAAAGA
65 CAAAGCATCAATATCATGTATCCTATTGAAAGAAATGTGTTTTTGG-TGCCTAATCTTGAAAAGA
* *
518265 ATGGAGATT-GTTACGAGAATCGATGCTTGTC
129 ATGGAGATTAG-TACGAGATTC-ATGTTTGTC
* * ** * * * * * * *
518296 TTATTTACGGGATGAACTTTGATTTCA-AAGAAAATAAG-GCAAAGAAAAGATTTTCATGCAAAA
1 TTATTTAAGAGACAAACTTTGATTTTATCA-AAAAT-GGTGGAAAGAAAAGCTTTTCTTGCGAAA
** * * * * * * * * **
518359 GAAAATCATCAACATCAT-TCATCCTAATG-AGGAGCATGTGCTTATAGTGCCTAATC-ACAAAA
64 CCAAAGCATCAATATCATGT-ATCCTATTGAAAGA-AATGTGTTTTTGGTGCCTAATCTTGAAAA
* * * * * * *
518421 TAAATGAAGATCATTACTAGAATCCATGTTTTTC
127 -GAATGGAGATTAGTACGAG-ATTCATGTTTGTC
* * ** * * * ****
518455 TCATTTGAG-GTATGAACTTAGACTTTA-CAAAAATTGGTGGGAA-AAATTAATTTCTTGCGAAA
1 TTATTTAAGAG-ACAAACTTTGATTTTATCAAAAA-TGGTGGAAAGAAAAGCTTTTCTTGCGAAA
* * * * *** * * *
518517 GCAAAGCATCAATATCGTGTATCGTAATGAGAA-AACCATGTTTATGGTGCCTAATCCTGAAATG
64 CCAAAGCATCAATATCATGTATCCTATTGA-AAGAAATGTGTTTTTGGTGCCTAATCTTGAAAAG
* * * *
518581 ATTTGG-GATTAGTATGACAATTCATGTTTATC
128 A-ATGGAGATTAGTACGA-GATTCATGTTTGTC
** **
518613 TTATTTAAGAGTTTAAA-TGTTGATTCCATCAAAAACT-GTGGAAAGAAAAGCTTTTCTTGC-AA
1 TTATTTAAGAG-ACAAACT-TTGATTTTATCAAAAA-TGGTGGAAAGAAAAGCTTTTCTTGCGAA
* * * * ** * * *
518675 AGCCAAAGCATCAATGTTAAGCATCCTAAAGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAA
63 A-CCAAAGCATCAATATCATGTATCCTATTGAAAGAAATGTGTTTTTGGTGCCTAATCTTGAAAA
* * *
518740 GAATGGAGATT-GTTATGAGAATCAATGCTTGTC
127 GAATGGAGATTAG-TACGAGATTC-ATGTTTGTC
* * ** *** ** * * * *
518773 TTGTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGG-ACAAAGAAAAGATTTTCATGCTAAAG
1 TTATTTAAGAGACAAACTTTGATTTTATCAAAAAT-GGTGGAAAGAAAAGCTTTTCTTGCGAAAC
* ** * * * * * * **
518837 AAAATTATCAATATCGTTTATCCTAATGAGAAG-AATGTGCTTCTAGTGCCTAATC-ACAAAATG
65 CAAAGCATCAATATCATGTATCCTATTGA-AAGAAATGTGTTTTTGGTGCCTAATCTTGAAAA-G
* * * ** *
518900 AATGAAGATCATTATTAGAATCAATGTTTGTC
128 AATGGAGATTAGTACGAGATTC-ATGTTTGTC
* * * * * * * *
518932 TCATTTGAG-GCACGAACTTAGACTTTA-CAAAAATTGGT-GAAA-AAATGCCTTTT-TTACGAG
1 TTATTTAAGAG-ACAAACTTTGATTTTATCAAAAA-TGGTGGAAAGAAAAG-CTTTTCTTGCGAA
* * * * **
518992 ACCAAAGCATCAATATCGTGTATCCTAATGAGAAGAACA-G-GTGTATGGTGCCTAATCCAGAAA
63 ACCAAAGCATCAATATCATGTATCCTATTGA-AAGAA-ATGTGTTTTTGGTGCCTAATCTTGAAA
* * * *
519055 AGAATAGG-GATTGGTATGAATATTCCTGTTTGTC
126 AGAAT-GGAGATTAGTACG-AGATTCATGTTTGTC
* * *
519089 TTATTTAAGAGACAAACTTTG-TTTCTATCAAAAACGGTGGAAATAAAAGCTTTTCTTGCGACAC
1 TTATTTAAGAGACAAACTTTGATTT-TATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAAC
* ** * * * * *
519153 CAAAGCATCAATGTTGTGTATCCTATTGAACGGAATGTGTTTTAGGTTCCTAATCTTGAAAATAA
65 CAAAGCATCAATATCATGTATCCTATTGAAAGAAATGTGTTTTTGGTGCCTAATCTTGAAAAGAA
* * * * *
519218 TGGAGACT-GCTAGGAGAATCAATGCTCGTC
130 TGGAGATTAG-TACGAGATTC-ATGTTTGTC
* ** * * * * * * * * *
519248 TTATTTAAGGGATGAACTTTGATTATA-AAGAAAATAGG-GCAAAGAAAAGATATCCATGCTACA
1 TTATTTAAGAGACAAACTTTGATTTTATCA-AAAAT-GGTGGAAAGAAAAGCTTTTCTTGCGAAA
* * * * *
519311 CCAAGGCATCAATGTCATGTATCCTAATGAAGGGAAA-GTGTTTTTGGCT-CCCAATCTTGAAAA
64 CCAAAGCATCAATATCATGTATCCTATTGAA-AGAAATGTGTTTTTGG-TGCCTAATCTTGAAAA
** * *
519374 G-ATCGGAGATT-GTTGTGAGAATTGATGCTTGTC
127 GAAT-GGAGATTAG-TACGAG-ATTCATGTTTGTC
519407 TTATTTAAG
1 TTATTTAAG
519416 GGATGAACTT
Statistics
Matches: 6656, Mismatches: 2113, Indels: 1228
0.67 0.21 0.12
Matches are distributed among these distances:
141 3 0.00
142 5 0.00
143 64 0.01
144 14 0.00
145 9 0.00
146 1 0.00
149 3 0.00
150 16 0.00
151 19 0.00
152 16 0.00
153 12 0.00
154 25 0.00
155 26 0.00
156 121 0.02
157 296 0.04
158 1758 0.26
159 3365 0.51
160 529 0.08
161 210 0.03
162 35 0.01
163 3 0.00
164 7 0.00
165 3 0.00
166 1 0.00
167 7 0.00
168 6 0.00
169 10 0.00
170 4 0.00
171 2 0.00
173 5 0.00
174 2 0.00
178 6 0.00
179 2 0.00
180 5 0.00
181 6 0.00
182 6 0.00
183 1 0.00
184 5 0.00
185 2 0.00
186 3 0.00
187 2 0.00
188 2 0.00
189 15 0.00
190 2 0.00
191 13 0.00
192 7 0.00
193 2 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (158 bp):
TTATTTAAGAGACAAACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAAACC
AAAGCATCAATATCATGTATCCTATTGAAAGAAATGTGTTTTTGGTGCCTAATCTTGAAAAGAAT
GGAGATTAGTACGAGATTCATGTTTGTC
Found at i:510838 original size:478 final size:475
Alignment explanation
Indices: 509874--511037 Score: 1578
Period size: 478 Copynumber: 2.4 Consensus size: 475
509864 AGGGAATGTG
* ** *
509874 TTATTTAAGAGACAAACTTTGAATCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGTGACACC
1 TTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACC
* * * * * *
509939 AAAGTATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGCTCCCAATCTTGAAAAGAAC
66 AAAGCATCAATGTCATATATCCTATTGAAGGGAAAGTGTTTTTGGTTCCAAATCTTGAAAAGAAT
510004 GGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATA
131 GGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATA
* * * *
510069 GGGCAAAAAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTTATCCTATTGAGGAAAATGT
196 AGGCAAAGAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTTATCCTAATGAGAAAAATGT
* * * * *
510134 GTTTATAGTACCTAATTACAAAATGAAAGAAGATCTTTACTAGAATCCATGTTTATCTTATTTCA
261 GCTTATAGCACCTAATCACAAAATGAAAGAAGATCATTACTAGAATCCATGTTTATCTCATTTCA
* * *
510199 GGCACGAACTTAGACATTACAGAAATTGATGGGAAAAATGCCTTTCTTGAAAAACTAAAGTATCA
326 GGCACGAACTTAGACATTACAAAAATTGATGGGAAAAATGCCTTTCTTGAAAAACCAAAGCATCA
* * *
510264 ATATCGTGTATCCTATTGAGAAGACCATGTTTATGGTGCCTAATCGTAAAAAAAATGGAGATTAG
391 ATATCGTGTATCCTAATGAGAAGAACATGTTTATGGTGCCTAATCCTAAAAAAAATGGAGATTAG
*
510329 TAAGAGTATTCATGTCTGTC
456 TAAGAGTATTCATGTCTGCC
* *
510349 TTATTTAAGAGACAAACTTTGATTCTACCAAAAATGGTGGAAAGAAAAGTTTTTCTTGCGACACC
1 TTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACC
* * * *
510414 AAAGCATCAATGTCATATATCTTATTGAAAGAAAAGTGTTTTTGGTTCCTAATCTTGAAAA-AAG
66 AAAGCATCAATGTCATATATCCTATTGAAGGGAAAGTGTTTTTGGTTCCAAATCTTGAAAAGAA-
* * * **
510478 TGGAGATTATTACGAGAATCAATGCTTATCTTATTTAAAAGATGAACTTTGATTTTAAGGAAAAT
130 TGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT
* *
510543 AAGGCAAAGAAAAGATTTTCATGCAAAAAAAAAAATCATCAATATCGTTTATCCTAATGA-AAAG
195 AAGGCAAAGAAAAGATTTCCATGC---AAAAAAAATCATCAATATCATTTATCCTAATGAGAAA-
*** * * * * *
510607 AATGTGCTTATAGCGTGTAGTCACAAAATTAATGAAGATCATTACTAGAATCTATGTTTGTCTCA
256 AATGTGCTTATAGCACCTAATCACAAAATGAAAGAAGATCATTACTAGAATCCATGTTTATCTCA
* * * * **
510672 TTTGAGGCACGAACTTAGACTTTTCAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAG
321 TTTCAGGCACGAACTTAGACATTACAAAAATTGATGGGAAAAATGCCTTTCTTGAAAAACCAAAG
* * * *
510737 CATCAATATTGTGTATCCTAATGAGAAGAACATGTTTATGGTGCCTAATCCTGAAAAGAATGGGG
386 CATCAATATCGTGTATCCTAATGAGAAGAACATGTTTATGGTGCCTAATCCTAAAAAAAATGGAG
* *
510802 ATTAGTATGAGTATTCATGTTTGCC
451 ATTAGTAAGAGTATTCATGTCTGCC
* * * * *
510827 TTATTTAAGAGATAGACTTTGTTTCTATCGAAAATGGTGGAAAGAAAAACTTTTCTTGCGACACC
1 TTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACC
** * * * *
510892 AAAGCATCAATGTTGTGA-ATCCTATTGAAGGGAAAGTGTTTTAGGTACCAAATCCTGAAAATAA
66 AAAGCATCAATGTCAT-ATATCCTATTGAAGGGAAAGTGTTTTTGGTTCCAAATCTTGAAAAGAA
* * *
510956 TGGAGACTGCTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTATAGAGGAAAA
130 TGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA-AGGAAAA
*
511021 TATGGCAAAGAAAAGAT
194 TAAGGCAAAGAAAAGAT
511038 ATCGATGCGA
Statistics
Matches: 598, Mismatches: 83, Indels: 12
0.86 0.12 0.02
Matches are distributed among these distances:
474 2 0.00
475 192 0.32
477 2 0.00
478 376 0.63
479 26 0.04
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (475 bp):
TTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACC
AAAGCATCAATGTCATATATCCTATTGAAGGGAAAGTGTTTTTGGTTCCAAATCTTGAAAAGAAT
GGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATA
AGGCAAAGAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTTATCCTAATGAGAAAAATGT
GCTTATAGCACCTAATCACAAAATGAAAGAAGATCATTACTAGAATCCATGTTTATCTCATTTCA
GGCACGAACTTAGACATTACAAAAATTGATGGGAAAAATGCCTTTCTTGAAAAACCAAAGCATCA
ATATCGTGTATCCTAATGAGAAGAACATGTTTATGGTGCCTAATCCTAAAAAAAATGGAGATTAG
TAAGAGTATTCATGTCTGCC
Found at i:512243 original size:476 final size:476
Alignment explanation
Indices: 511043--521514 Score: 12349
Period size: 476 Copynumber: 21.9 Consensus size: 476
511033 AAGATATCGA
* * * *
511043 TGCGACACCAAGGCATCAATGTCATGTATCCTATTGAAGGGAATGTGCTTTTGGCTCCCAATCTT
1 TGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGAGAATGTGTTTTTGGTTCCCAATCTT
*
511108 GAAAAGAATGGAGATTGTTAGGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA
66 GAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA
511173 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATG
131 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATG
* *
511238 TGGAGAATGTACTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG
196 AGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG
* * * *
511303 CCTCATTTGGGGCATGAAAC-TAGACTTTAAAAAAAATGGAGGGAAAAATGCCTTTCTTGCGAAA
261 TCTCATTTGAGGCATG-AACTTAGACTTTACAAAAATTGGAGGGAAAAATGCCTTTCTTGCGAAA
* * * * ** * *
511367 CCAAAACATCACTATCGTGTATCCTAATAAGAAGGCCGTGTTTATGGTGCCTAATCTTGAAAAGA
325 CCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGA
* * * * *
511432 ATTGGGATTAGCATGACTATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAA
390 ATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA
*
511497 CGGTGGAATGAAAAGCTTTTCT
455 CGGTGGAAAGAAAAGCTTTTCT
* * * * *
511519 TGCAAACCCCAAAGCATCAATATCATGTATCCTATTGAAGGGAATGTGTTTTTGGCTCCCAATCT
1 TGC-GACACCAAAGCATCAATGTCATGTATCCTATTGAAGAGAATGTGTTTTTGGTTCCCAATCT
* *
511584 TGAAAGGAATGGAGATTGTTAGGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT
65 TGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT
* * * *
511649 AAGGAAAATAGGGCAAAGAAAAGATTTTCATGTAAAAGAAAATCATCAATATCGTTTACCCTAAT
130 AAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
* * * *
511714 GAAGAGAATGTACTTATAGTGCCTTATCACAAAATGAAAGAAGATCATTACTAGAATCCATGTTT
195 GAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
* * * *
511779 GTGTCATTT-AGGGCATGAAATTAGACTTTACAAAAAATGGAGGGAAAAATGCCTTTCTTACGAA
260 GTCTCATTTGA-GGCATGAACTTAGACTTTACAAAAATTGGAGGGAAAAATGCCTTTCTTGCGAA
* * * *
511843 ACCAAAACATGAATGTCGTGTATCCTAATGAGAAGACTGTGTTTATGGTGCCTAATCCTAAAAAG
324 ACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAG
* *
511908 AATGGGGATTAGTATGAGCATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAA
389 AATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAA
*
511973 ACAGTGGAAAGAAAAGCTTTTCT
454 ACGGTGGAAAGAAAAGCTTTTCT
* * *
511996 TGGGACACCAAAGCATCAATGTCATGTATCCTATTGAAGAGAATGTGTTTTTGGCTCACAATCTT
1 TGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGAGAATGTGTTTTTGGTTCCCAATCTT
** * *
512061 GAAAAGAACAGAGATTGTTAGGAGAATCGATACTTGTCTTATTTAAGGGATGAACTTTGATTTTA
66 GAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA
* * * *
512126 AGGAAAAT-GAGGCAAAGAAAAGATTTTCATGTAAAAGAAAATCATCAAAATCATTTATCCTATT
131 AGGAAAATAG-GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
* * * * * * *
512190 GAGGAGAATGTGTTTATAGTGCCTAATTACATAATGAAAGAAGATCTTTACTAGAATACAAGTTT
195 GAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
** * * * *
512255 GTCTCATTTGAGGCACAAACTTAGACATTACAAAAATTGGTA-GGAAAAATGCCTTCCTTTCAAA
260 GTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGG-AGGGAAAAATGCCTTTCTTGCGAA
* * * * * *
512319 ACCAAAGTATCAATATCATGTATCCTATTGAGAAGACCATTTTTATGGTGCCTAATCCTAAAAAT
324 ACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAG
* * * * *
512384 AATGGAGATTAGTATAATTATGCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTACCAAAA
389 AATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAA
512449 ACGGTGGAAAGAAAAGCTTTTCT
454 ACGGTGGAAAGAAAAGCTTTTCT
* *
512472 TGCAACACCAAAGCATCAATGTCATGTATCCTATTGAA-AGGAATGTGTTTTTGGTTCCTAATCT
1 TGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGA-GAATGTGTTTTTGGTTCCCAATCT
* *
512536 TGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGAGTTGAACTTTGATTTT
65 TGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT
* * * * *
512601 ATGGAAAATAGGGCAAAGAAAATATTTTCAGGCAAAAGAAAATCATCAATATCGTTTATCCTAAT
130 AAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
** * *
512666 GAAAAGAATGTGCTTATAGTGCCTAGTCACAAAATGAATGAAGATCATTACTAGAATCTATGTTT
195 GAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
* * * *
512731 GTCTCATTTGAGGCACGAACTTAGACTTTTCAAAAATTGGTGGGAAAAATAG-CTTTCTTACGAA
260 GTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGAGGGAAAAAT-GCCTTTCTTGCGAA
* * * * * *
512795 ACTAAAGCATCAATATTGTGTATCCTAATCACAAGAACT-TGTTTATGGTGCCTAGTCCTGAAAA
324 ACCAAAGCATCAATATCGTGTATCCTAATGAGAAG-ACTATGTTTATGGTGCCTAATCCTAAAAA
* * *
512859 GAATGGGGATTAGTATGAGTATTCATGTTTATCTTATTTAAGAGACAGACTTTGTTTCTATCAAA
388 GAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAA
* *
512924 AATGGTGGAAAGAAAAGCTTTTCC
453 AACGGTGGAAAGAAAAGCTTTTCT
** * *
512948 TGCGACACCAAAGCATCAATGTTGTGTATCCTATTGAAGGGAATGTGTTTTAGGTTCCCAATCTT
1 TGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGAGAATGTGTTTTTGGTTCCCAATCTT
* * * * * *
513013 GAAAATAATGGAGACTGCTATGAGTATCGATGCTCGTCTTATTTAAGGGATGAACTTTGATTATA
66 GAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA
* ** * ** ** * *
513078 AGGAAAATAGGGCAAAGAAAAGATATCCATGTGACACCAAGGCATCAATGTCATGTATCCTAATG
131 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATG
* * * * ** * ** * **
513143 AAAGGA-AA-GTGTTTTTGGCT-CCCAATCTTGAAAA-GAATGGAGATTGTTACGAGAATTGATG
196 --AGGAGAATGTGCTTATAG-TGCCTAATC-ACAAAATGAATGAAGATCATTACTAGAATCCATG
* * * * * * * * * *** **
513204 CTTGTCTTATTTAAGGGATGAACTTTGTCTCTTAAATAAGACAAACATGAATTCTCATCCTAATC
257 TTTGTCTCATTTGAGGCATGAACTTAGACT-TT--A-CA-A-AAA-TTGGA--GGGA--AAAAT-
* * * * * * * *
513269 CCCATTCTTTTGAGGATTAGGATAGAATCAAAGCATTAAAATTGTGTATCCTAGTGAGAAGACTA
310 GCC-TT-TCTT---G----CG--A-AACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTA
* ** * * * *
513334 TGTTTATGGTGCCTAATCCTGAAAAAAAAATGGGGAAAAGTATAAGTGTTCAAGTTTTTCTTATT
363 TGTTTATGGTGCCTAATCCT--AAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATT
*
513399 TAAGAGACAAACTTTGATTTTATCAAAAACGGTGGAAAGAAAAGCTTTTCT
426 TAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* * ** * * * * *
513450 TGTGACACCAAAGCATCAGTGTCATCAATCCTAATGAAGGGAATGTGTTTTAGGTTCTCAATCTA
1 TGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGAGAATGTGTTTTTGGTTCCCAATCTT
* * ** ** * * *
513515 GAAAATAATGGAGACTAATGCGAGAATCGATGCTCGTCTTATTTAAGGGATTAACTTTGATTATA
66 GAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA
* *
513580 AGGAAAATAGGGAAAAGAAAAGATTTCTAAT-CAAAAGAAAATCATCAATATCATTTATCCTAAT
131 AGGAAAATAGGGCAAAGAAAAGATTTC-CATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
* * * * *
513644 TAGGAGAATGTGCTTATAGTACCCAATCACAAAATGAATGAAGATCAATACCAGAATCCATGTTT
195 GAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
* ***
513709 GTCTCATTTGAGGCATGAACTTAGACTTTACAGAAATTCTTGTGG-AAAATAG-CTTTCTT--G-
260 GTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGAG-GGAAAAAT-GCCTTTCTTGCGA
*
513769 ---CAAA--A-C-----C-TGTATCCTAATGAGAAGACCATGTTTATGGTGCCTAATCCTAAAAA
323 AACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAA
** *
513822 GAATGGGGATTAGTATGACAATTCAAT-TTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAA
388 GAATGGGGATTAGTATGAGTATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAA
** *
513886 AAACTATGGAAAGAAAAGCTTTTCC
452 AAACGGTGGAAAGAAAAGCTTTTCT
* * * * *
513911 TACGATACCAAAGCATCAATGTTAAGTATCCTGA-AGAA-AGGAATGTGTTTTTGGTTCCCAATC
1 TGCGACACCAAAGCATCAATGTCATGTATCCT-ATTGAAGA-GAATGTGTTTTTGGTTCCCAATC
*
513974 TTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATAAACTTTGATTT
64 TTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTT
* * * * * *
514039 TATGAAAAATAGGGCAAAGAAAAGATTTTCACGCAAAAGAAAATCATCAATAGCATTTATCCTAT
129 TAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAA
* * * * *
514104 TGAGAAGAATATGCTTATAGTGCCTAATCATAGAAAT-AATGAAGATCTTTGCTAGAATCCATGT
194 TGAGGAGAATGTGCTTATAGTGCCTAATCACA-AAATGAATGAAGATCATTACTAGAATCCATGT
* * * * *
514168 TTGTCTCATTTAAGGCACGAACTTAGACTTTACAAAAATTGGCGAG-AAAATGCCTTTCTTGTGA
258 TTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGAGGGAAAAATGCCTTTCTTGCGA
* **
514232 AACCAAAGCATCCATATCGTGTATCCTAACAAGAAGACTATGTTTATGGTGCCTAA-CCTGAAAA
323 AACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT-AAAA
* * * *
514296 A-AATGGGGAATAGTATGAGTATTCAAGTTTTTCTTATTTAAGAGACAAACTTTGATTCTATAAA
387 AGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAA
*
514360 AAATGGTGGAAAGAAAAGCTTTTCT
452 AAACGGTGGAAAGAAAAGCTTTTCT
* * * * * * * * **
514385 TGTGACACCAAAGCATCAGTGTCATTTATCCTAATAAAGGGAATGTGTTTTAGGTTCTCAATCCA
1 TGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGAGAATGTGTTTTTGGTTCCCAATCTT
* * * ** * *
514450 GAAAATAATGGAGACTGCTATGAGAATCGATGCTCATCTTATTTAAGGGATTAACTTTGATTATA
66 GAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA
* * * * *
514515 AGGAAAATAGGGAAAAGAAAAGATTTCTAAGCAAAAGAAAATCTTCAATATCATTTATCCTAATT
131 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATG
* * * *
514580 AGGAGAATGTGCTTATAG-GACCTAATCACAAAATGAATGAAGATCAATACCAGAATCTACGTTT
196 AGGAGAATGTGCTTATAGTG-CCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
* *** **
514644 GTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTCTTGTGG-AAAATAACTTTCTTGCGAA
260 GTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGAG-GGAAAAATGCCTTTCTTGCGAA
* * * * *
514708 TCCAAAGCATTAATATTGCGTATCCTAATGAGAAGACCATGTTTATGGTGCCTAATCCTAAAAAG
324 ACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAG
* ** * *
514773 AATAGGGATTAGTATGACAATTCAAT-TTTGTCTTATTTAGGAGACAAACTTTGATTCCATCAAA
389 AATGGGGATTAGTATGAGTATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAA
* *
514837 AACTGTGGAAAGAAAAGCTTTTCC
453 AACGGTGGAAAGAAAAGCTTTTCT
** * * * * ** *
514861 TATGATACCAAAGCATCAATGTTAAGTATCTTAAAGAA-AGGAATGTGTTTTTGGTTCCTAATCT
1 TGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGA-GAATGTGTTTTTGGTTCCCAATCT
* *
514925 TGAAAAGAATGGAGATTGTTATGAGAATCAATGCTTGTCTTATTTAAGGGATGAAC-TTGACTTT
65 TGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT
*
514989 AAGGAAAATAGGGCAAAGAAAAGATTTCCATACAAAAGAAAATCATCAATATCATTTATCCTAAT
130 AAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
* * * ** *
515054 GAGAAGAATGTGCTTATTGTGCTTAATCACAAAATGAATGAAGATTTTTGCTAGAATCCATGTTT
195 GAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
* *
515119 GTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGCA-GGAAAAATGCCTTTCTTGCAAA
260 GTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGG-AGGGAAAAATGCCTTTCTTGCGAA
* * * * * * *
515183 ACCAATGCATCCATATCGTGTATCCGAATAAGAA-ACTATGTTTATGGTGCCTAATCTTGACAA-
324 ACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAG
* * * *
515246 AATGGGGAATAGTATGAGTATTCAAGTTTTTCTTATTTAAGAGACCAACTTTGATTCTATCAAAA
389 AATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAA
*
515311 ATGGTGGAAAGAAAAGCTTTTCT
454 ACGGTGGAAAGAAAAGCTTTTCT
* ** * * * * * *
515334 TGTGACACCAAAGCATCGGTGTCATTTATCCTAATGAAGGGAATGTGTTTTAGGTTCTCAATCCA
1 TGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGAGAATGTGTTTTTGGTTCCCAAT-CT
* * * * * * * * *
515399 T-AAAATAATGGAGATTGCTACGAGAATCGAAGCTCGTCTCATTTAAGGGATTAACTTTAATTAT
65 TGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT
* * *
515463 AAGGAAAATAGAGAAAACAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
130 AAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
* * * *
515528 GAGAAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCTTTGCTAGAATCAATGTTT
195 GAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
*
515593 GTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGCA-GGAAAAATGCCTTTCTTGCAAA
260 GTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGG-AGGGAAAAATGCCTTTCTTGCGAA
** ** * **
515657 ACCAAAGCATCCTTATTATGTATCCGAACAAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAA
324 ACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT-AAAAA
* * * *
515722 -AATGGGGAATATTATGAGTATTCAGGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAA
388 GAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAA
*
515786 AATGGTGGAAAGAAAAGCTTTTCT
453 AACGGTGGAAAGAAAAGCTTTTCT
* *
515810 TGCAACACCAAAGCATCAATGTCATGTATCCTATTGAA-AGGAATGTGTTTTTGGCTCCCAATCT
1 TGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGA-GAATGTGTTTTTGGTTCCCAATCT
* * ** *
515874 TCAAAAGAACGGAGATTGTTACCAGAATCGATGTTTGTCTTATTTAAGGGATGAACTTTGATTTT
65 TGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT
* *
515939 AAGGAAAATAGGGCAAAGAAAAGATTTTCAGGCAAAAGAAAATCATCAATATCATTTATCCTAAT
130 AAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
** * * *
516004 GAAAAGAATGTGCTTGTAGTGCCTAGTCACAAAATGAATGAAGATCATTACTAGAATCTATGTTT
195 GAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
* ** * * *
516069 GTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTTAACAGGAAAAATGCCTATCTTGTGAA
260 GTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGA-GGGAAAAATGCCTTTCTTGCGAA
* * * * * *
516134 ACCAAAACATCCATATCGTGTGTCCTAACGAGAAGACTAGGTTTATGGTGCCAAATCCTGAAAAA
324 ACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT--AAAA
* * * * *
516199 AAAATTGGGAAT-GTTATGAGTATTCAAGTTTGTCTTTTTTAAGAGACAAACTTTGATTCTATCA
387 AGAATGGGGATTAG-TATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
* *
516263 AAAACGATGGAAAGAAAAGTTTTTCT
451 AAAACGGTGGAAAGAAAAGCTTTTCT
* * * *
516289 TGCCACACCAAAGCGTCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTTCGCAATCTT
1 TGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGAGAATGTGTTTTTGGTTCCCAATCTT
* * * * * *
516354 GAAAAGAATGGATATTGTTACGAGTATCGGTGCTTATATTATTTAAGGGATGAACTTTGATTTTA
66 GAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA
* * * * * *
516419 AGGAAAATATGGCAATGAAAAGATTTCAATACAAAATAAAATCATCAGTATCATTTATCCTAATG
131 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATG
* * * *
516484 AAGAGAATATGCTTATAGTTCCTAATCATAAAATGAATGAAGATCATTACTAGAATCCATGTTTG
196 AGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG
* * *
516549 TGTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGAAAAAATGCCTTTCTTGCGAAAC
261 TCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGAGGGAAAAATGCCTTTCTTGCGAAAC
* * * *
516614 CAAAACATCAATATCGCGTATCCTAGTGAGAAGACTATGTTTATGGTGCCAAATCCTGAAAAA-A
326 CAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT-AAAAAGA
* * * ** * *
516678 ATGGGGAATAGAATAAGTATTCAAATTTGTCTTTTTTGAGAGACAAACTTTGATTCTATCAAAAA
390 ATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA
516743 CGGTGGAAAGAAACA-CTTTTCT
455 CGGTGGAAAGAAA-AGCTTTTCT
* * * * * * * ** *
516765 TGCAACAACAAAGCATCAAAGTCATATATCTTATTGAATG-GACTGCGTTTTTGACTCCCAATCA
1 TGCGACACCAAAGCATCAATGTCATGTATCCTATTGAA-GAGAATGTGTTTTTGGTTCCCAATCT
* * *
516829 AGAAAAAAATGGAGATTGTTA-GAAGAATCGATGCTTGTCTTATTTAAGCGATGAACTTTGATTT
65 TGAAAAGAATGGAGATTGTTATG-AGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTT
* * * *
516893 TAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCAACAATTTCATTCATCC-AA
129 TAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAA
* * * *
516957 TTGAGGAGAATGTGCTTATAGTGCCTAATCATAAAATAAATGGAGATCATTACTAGAATCTATGT
194 -TGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
* * * * * *
517022 TTGTCTCATTTGGGGCATGAAATTAGACTATACAAAAAATGGAGGGAAAAAAGCCTTTCTTTCGA
258 TTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGAGGGAAAAATGCCTTTCTTGCGA
* * * *
517087 AACCAAAACATCATTGTCGTGTATCCTAATGAGAAGACTGTGTTTATGGTGCCTAAT-CTGAAAA
323 AACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT-AAAA
* * * * * * * *
517151 AGAATCGAGATTAGTATCACTATTCTTGTTTGTCTTATTTAAGAGATAAACTTTGATTCCATCCA
387 AGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAA
* *
517216 AAACGGTGGAATGAAAAGCTTTGCT
452 AAACGGTGGAAAGAAAAGCTTTTCT
* * * * *
517241 TGCTACACCAAAGCATCAATATCACGTATCCTATTGATGGGAATGTGTTTTTGGTTCCCAATCTT
1 TGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGAGAATGTGTTTTTGGTTCCCAATCTT
* * *
517306 GCAAAGAATGGAGATTCTTATGAGAATCGATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTA
66 GAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA
*
517371 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATTATTTATCCTAATG
131 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATG
* * *
517436 AGAAAAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCACTACTAGAATCCATGTTTG
196 AGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG
* * * * *
517501 TCTCATTTGAGGCATGAACTTGGACTATACGAAAATT-AACGGGAAAAATACCTTTCTTGCGAAA
261 TCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGA-GGGAAAAATGCCTTTCTTGCGAAA
* * * * * * *
517565 CAAAATCATCCATATCATGTATCCGACTGAGAAGACTATGTTTATGTTGCCTAATCCTGAAAAA-
325 CCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT-AAAAAG
* * * *
517629 AATGGGGAATATTATGAGTATTGAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAA
389 AATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAA
*
517694 ATGGTGGAAAGAAAAGCTTTTCT
454 ACGGTGGAAAGAAAAGCTTTTCT
* * * *
517717 TGCGACACCAAAGCATCAATGTTATGTATCTTATTGAAGGGAATGTGTTTTTGGCTCCCAATCTT
1 TGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGAGAATGTGTTTTTGGTTCCCAATCTT
* *
517782 GAAAAGAATGGAGATTGTTACGAGAATCAATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA
66 GAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA
* * *
517847 AGGAAAAT-GAGGCAAAGAAAAGATTTTCATGTAAAAGAAAATCATCGAA-ATCATTTATCCTAT
131 AGGAAAATAG-GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATC-AATATCATTTATCCTAA
* * * * * * *
517910 TGAGGAGAATGTGTTTATAGTGCCTAATTACATAATGAAAGAAGATCTTTACTAGAATACAAGTT
194 TGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTT
** * * *
517975 TGTCTCATTTGAGGCACAAACTTAGACATTACAAAAATTGGTA-GGAAAAATGCCTTCCTTGCAA
259 TGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGG-AGGGAAAAATGCCTTTCTTGCGA
* * * * *
518039 AACCAAAGTATCAATATCATGTATCCTATTGAGAAGACCATTTTTATGGTGCCTAATCCTAAAAA
323 AACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAA
* * * * * *
518104 TAATGGAGATTAGTATAATTATGCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTACCAAA
388 GAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAA
518169 AACGGTGGAAAGAAAAGCTTTTCT
453 AACGGTGGAAAGAAAAGCTTTTCT
* * * *
518193 TGCAACACCAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGCTCCCAATCAT
1 TGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGAGAATGTGTTTTTGGTTCCCAATCTT
* * *
518258 GAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTACGGGATGAACTTTGATTTCA
66 GAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA
* * * * *
518323 AAGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAACATCATTCATCCTAATG
131 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATG
* * *
518388 AGGAGCATGTGCTTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTT
196 AGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG
* * *** *
518453 TCTCATTTGAGGTATGAACTTAGACTTTACAAAAATTGGTGGGAAAAATTAATTTCTTGCGAAAG
261 TCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGAGGGAAAAATGCCTTTCTTGCGAAAC
* * * * * *
518518 CAAAGCATCAATATCGTGTATCGTAATGAGAAAACCATGTTTATGGTGCCTAATCCTGAAATGAT
326 CAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAA
* ** * ** *
518583 TTGGGATTAGTATGACAATTCATGTTTATCTTATTTAAGAGTTTAAA-TGTTGATTCCATCAAAA
391 TGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAG-ACAAACT-TTGATTCTATCAAAA
*
518647 ACTGTGGAAAGAAAAGCTTTTCT
454 ACGGTGGAAAGAAAAGCTTTTCT
* * * * **
518670 TGC-AAAGCCAAAGCATCAATGTTAAGCATCCTAAAGAA-AGGAATGTGTTTTTGGTTCCCAATC
1 TGCGACA-CCAAAGCATCAATGTCATGTATCCTATTGAAGA-GAATGTGTTTTTGGTTCCCAATC
* *
518733 TTGAAAAGAATGGAGATTGTTATGAGAATCAATGCTTGTCTTGTTTAAGGGATGAACTTTGATTT
64 TTGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTT
* * * * *
518798 TAAGGAAAATAGGACAAAGAAAAGATTTTCATGCTAAAGAAAATTATCAATATCGTTTATCCTAA
129 TAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAA
* * * *
518863 TGAGAAGAATGTGCTTCTAGTGCCTAATCACAAAATGAATGAAGATCATTATTAGAATCAATGTT
194 TGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTT
* * * * * *
518928 TGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG-TGAAAAAATGCCTTTTTTACGAG
259 TGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGAGGGAAAAATGCCTTTCTTGCGAA
* *
518992 ACCAAAGCATCAATATCGTGTATCCTAATGAGAAGAAC-AGGTGTATGGTGCCTAATCC-AGAAA
324 ACCAAAGCATCAATATCGTGTATCCTAATGAGAAG-ACTATGTTTATGGTGCCTAATCCTA-AAA
* * * * *
519055 AGAATAGGGATTGGTATGAATATTCCTGTTTGTCTTATTTAAGAGACAAACTTTGTTTCTATCAA
387 AGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAA
*
519120 AAACGGTGGAAATAAAAGCTTTTCT
452 AAACGGTGGAAAGAAAAGCTTTTCT
** * *
519145 TGCGACACCAAAGCATCAATGTTGTGTATCCTATTGAACG-GAATGTGTTTTAGGTTCCTAATCT
1 TGCGACACCAAAGCATCAATGTCATGTATCCTATTGAA-GAGAATGTGTTTTTGGTTCCCAATCT
* * * * * * *
519209 TGAAAATAATGGAGACTGCTAGGAGAATCAATGCTCGTCTTATTTAAGGGATGAACTTTGATTAT
65 TGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT
* * * * ** ** * *
519274 AAAGAAAATAGGGCAAAGAAAAGATATCCATGCTACACCAAGGCATCAATGTCATGTATCCTAAT
130 AAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
* * * * * ** * ** * **
519339 GAAGG-GAAAGTGTTTTTGGCT-CCCAATCTTGAAAA-G-ATCGGAGATTGTT-GTGAGAATTGA
195 G-AGGAGAATGTGCTTATAG-TGCCTAATC-ACAAAATGAAT-GAAGATCATTACT-AGAATCCA
* * * * * * **** * *
519399 TGCTTGTCTTATTTAAGGGATGAACTTTGTCTCTTA-AATAAGACAAACATGAATACTCATCCTA
255 TGTTTGTCTCATTTGAGGCATGAACTTAGACT-TTACAA-AA-A-TTGGAGGGA-A---A----A
* * * *
519463 ATCCCCATTCTTTTCAAGATTAG-GATAGAATCAAAGCATCAATATCGCGTATCCTAAAGAGAAG
308 AT--GC---C-TTTC----TT-GCG--A-AACCAAAGCATCAATATCGTGTATCCTAATGAGAAG
* * *
519527 ACCATGTTTACGGTGCCTAATCCTGAAAAA-AATTGGGATTAGTATG-GCTATTCATGTTTGTCT
359 ACTATGTTTATGGTGCCTAATCCT-AAAAAGAATGGGGATTAGTATGAG-TATTCATGTTTGTCT
** * *
519590 TATTTAAGAGACAAACTTTGATTCTATCAAAAGTGGTGGAAAGAATAGCTTATCT
422 TATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* * ** * *
519645 TGCGATACCAAAGCATCAATGTCATGTATCCTAGTGAAGAGAATGTGTTTCAGGTTCCTAATCCT
1 TGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGAGAATGTGTTTTTGGTTCCCAATCTT
* * * *
519710 GAAAATAATGGAGACTGCTATGAGAATCGATGCTTGTTTTATTTAAGGGATGAACTTTGATTTTA
66 GAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA
* * * * *
519775 AGGAAAATAAGGCAAACAAAA-ATTTCCATGCAAAAGAAAATCATCAATATAATTCATTCTAATG
131 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATG
* * *
519839 AGGAGAATGTGCTTATAATGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTA
196 AGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG
* * * *
519904 CCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGTGG-AAAATG-CTTTCTTGTGAAA
261 TCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGAG-GGAAAAATGCCTTTCTTGCGAAA
* * * * * * *
519967 CCAAAACATTAATATTGCGTATCCTAATGAGAAGACCATGTTTATGTTGCCTAATCCTGAAAAGA
325 CCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGA
* ** * * *
520032 ATGAGGATTAGTATGACAATTCATGTTTGTCTTATTTAAGAGACGAACTTTGATTCCATTAAAAA
390 ATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA
* *
520097 GGGTAGAAAGAAAAGCTTTTCT
455 CGGTGGAAAGAAAAGCTTTTCT
* * * ** **
520119 TGCGATACCAAAGCATCAATGTTAAGTATCCTAAAGAA-AGGAATGCATTTTTGGTTCCCAATCT
1 TGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGA-GAATGTGTTTTTGGTTCCCAATCT
* *
520183 AGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTATCTTATTTAAGGGATGAACTTTGATTTT
65 TGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT
* *
520248 AAGGAAAATACGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCTTCAATATCATTTATCCTAAT
130 AAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
** *
520313 GATAAGAATGTGCTTATAGTGCCTAATCATAAAATGAATGAAGATCATTACTAGAATCCATGTTT
195 GAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
* * * * *
520378 GTCTCATTTCAGGCACGAACTTAGACTTTACAAAAATTAGCA-GGAAAAATGCCTTCCTTACGAA
260 GTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATT-GGAGGGAAAAATGCCTTTCTTGCGAA
* * *
520442 ACCAAAGCATCCATATCTTGTATCCTAATGAGAAGACTATGTTTATGTTGCCTAATCCTAAAAAG
324 ACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAG
* ** ** *
520507 AATGAGGATTAGTATGACAATTCATGTTTGTCTTATTTAAGAGATGAACTTTGATTCCATCAAAA
389 AATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAA
* *
520572 ACGGTAGAAAGAAAAACTTTTCT
454 ACGGTGGAAAGAAAAGCTTTTCT
* * * ** **
520595 TGCGATACCAAAGCATCAATGTTAAGTATCCTAAAGAA-AGGAATGCATTTTTGGTTCCCAATCT
1 TGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGA-GAATGTGTTTTTGGTTCCCAATCT
*
520659 TGAAAAGAATGGAGATTGTTATAAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT
65 TGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT
* *
520724 AAGGAAAATAGGGAAAAGAAAAGATTTCCATGCAAAAGAAAATCTTCAATATCATTTATCCTAAT
130 AAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
* *
520789 GAGAAGAATGTGCTTATAGTGCCTAATCATAAAATGAATGAAGATCATTACTAGAATCCATGTTT
195 GAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
* * *
520854 GTCACATTTCAGGCATGAACTTAGACTTTACAAAAATTGGCA-GGAAAAATGCCTTCCTTGCGAA
260 GTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGG-AGGGAAAAATGCCTTTCTTGCGAA
* * **
520918 GCCAAAGCATCCATATCGTGTATCCTGCTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAA
324 ACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT-AAAAA
* * * * *
520983 -ATTGGGGAATATTATGAGTATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAA
388 GAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAA
*
521047 AATGGTGGAAAGAAAAGCTTTTCT
453 AACGGTGGAAAGAAAAGCTTTTCT
* * * *
521071 TACGACACCAAAGCATCAATGCCATGTATCCTATTGAA-AGGAATATGTTTTTGGCTCCCAATCT
1 TGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGA-GAATGTGTTTTTGGTTCCCAATCT
* * *
521135 TGAAAAGAATGGAAATTTTTATGAGAATCGATGCTTGTCTTATTTAAGGGATAAACTTTG-TTTT
65 TGAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTT
* *
521199 GAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATTAATATCATTTATCCTAT
130 -AAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAA
* *
521264 TGAGGAGAATGTGTTTATAGCT-CCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGT
194 TGAGGAGAATGTGCTTATAG-TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
** * **
521328 TTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGTGG-AAAATGCCTTTCTTATG
258 TTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGAG-GGAAAAATGCCTTTCTTGCG
* * * * *
521392 AAACCAAAACATTAATATTGCGTATCCTAATGAGAAGACAATGTTTATGGTGCCTAATCC-AGAA
322 AAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTA-AA
** *
521456 AAGAAT-GGGATTAGTATGACAATTAATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
386 AAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
521515 CACAAAATGA
Statistics
Matches: 8569, Mismatches: 1239, Indels: 377
0.84 0.12 0.04
Matches are distributed among these distances:
459 1 0.00
460 14 0.00
461 323 0.04
462 7 0.00
463 39 0.00
466 4 0.00
468 1 0.00
469 1 0.00
470 1 0.00
472 5 0.00
473 180 0.02
474 839 0.10
475 808 0.09
476 4263 0.50
477 856 0.10
478 80 0.01
479 349 0.04
480 2 0.00
481 5 0.00
482 4 0.00
483 3 0.00
485 1 0.00
487 6 0.00
488 7 0.00
489 5 0.00
490 4 0.00
491 3 0.00
492 2 0.00
493 3 0.00
495 2 0.00
496 3 0.00
497 6 0.00
498 14 0.00
499 93 0.01
500 316 0.04
501 13 0.00
502 304 0.04
503 2 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.31
Consensus pattern (476 bp):
TGCGACACCAAAGCATCAATGTCATGTATCCTATTGAAGAGAATGTGTTTTTGGTTCCCAATCTT
GAAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA
AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATG
AGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG
TCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGAGGGAAAAATGCCTTTCTTGCGAAAC
CAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAA
TGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAC
GGTGGAAAGAAAAGCTTTTCT
Found at i:521332 original size:159 final size:156
Alignment explanation
Indices: 519728--521366 Score: 579
Period size: 159 Copynumber: 10.3 Consensus size: 156
519718 TGGAGACTGC
* * * * * *
519728 TATGAGAATCGATGCTTGTTTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAACA
1 TATGAGAATCCATGTTTGTCTTATTTAAGGGATAAACTTTGATTTTAA--AAAAT-GGGCAAAGA
* * * * * * *
519793 AAA-ATTTCCATGCAAAAGAAAATCATCAATATAAT-TCATTCTAATGAGGAGAATGTGCTTATA
63 AAAGATTTCCATGCAAAAGAAAAGCATCAATATCATGT-ATCCTATTGAGAAGAATATGTTTATA
* *
519856 -ATGCCTAATCACAAAATGAATGAAGATCAA
127 GCTGCCTAATCACAAAA-GAATGAAGATCAT
** * * * ** * * * ****
519886 TACT-AGAATCCATGTTTACCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGTGGAA
1 TA-TGAGAATCCATGTTTGTCTTATTTAAGGGATAAACTTTGATTTTA-AAAAATGGGCAAAGAA
* * * ** * *** * **
519950 AATGCTTT-CTTGTGAAACCAAAA-CATTAATATTGCGTATCCTAATGAGAAGACCATGTTTAT-
64 AA-GATTTCCATG-CAAAAGAAAAGCATCAATATCATGTATCCTATTGAGAAGAATATGTTTATA
* * * *
520012 GTTGCCTAATC-CTGAAAAGAATGAGGATTAG
127 GCTGCCTAATCAC--AAAAGAATGAAGATCAT
* * * ** *
520043 TATGACAATTCATGTTTGTCTTATTTAAGAGACGAACTTTGATTCCATT-AAAAA-GGGTAGAAA
1 TATGAGAATCCATGTTTGTCTTATTTAAGGGATAAACTTTGATT---TTAAAAAATGGG--CAAA
* * * * * ** * * * **
520106 GAAAAGCTTTTCTTGCGATACCAAAGCATCAATGTTAAGTATCCTAAAGA-AAGGAATGCAT-TT
61 GAAAAGATTTCCATGCAAAAGAAAAGCATCAATATCATGTATCCTATTGAGAA-GAAT--ATGTT
* * * * * **
520169 T-T-GGTTCCCAATCTAGAAAAGAATGGAGATTGT
123 TATAGCTGCCTAATC-ACAAAAGAATGAAGATCAT
* * * * *
520202 TATGAGAATCGATGCTTATCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATACGGCAAAGA
1 TATGAGAATCCATGTTTGTCTTATTTAAGGGATAAACTTTGATTTTAA--AAAAT-GGGCAAAGA
* * * * * * *
520267 AAAGATTTCCATGCAAAAGAAAATCTTCAATATCATTTATCCTAATGATAAGAATGTGCTTATAG
63 AAAGATTTCCATGCAAAAGAAAAGCATCAATATCATGTATCCTATTGAGAAGAATATGTTTATAG
*
520332 -TGCCTAATCATAAAATGAATGAAGATCAT
128 CTGCCTAATCACAAAA-GAATGAAGATCAT
* * * ** * * ** *
520361 TACT-AGAATCCATGTTTGTCTCATTTCAGGCACGAACTTAGACTTTACAAAAATTAGC-AGGAA
1 TA-TGAGAATCCATGTTTGTCTTATTTAAGGGATAAACTTTGATTTTA-AAAAATGGGCAAAGAA
* * * ** * * * *
520424 AA-ATGCCTTCCTTACGAAACCAAAGCATCCATATCTTGTATCCTAATGAGAAGACTATGTTTAT
64 AAGAT---TTCCATGCAAAAGAAAAGCATCAATATCATGTATCCTATTGAGAAGAATATGTTTAT
* * * *
520488 -GTTGCCTAATC-CTAAAAAGAATGAGGATTAG
126 AGCTGCCTAATCAC--AAAAGAATGAAGATCAT
* * * * * * *
520519 TATGACAATTCATGTTTGTCTTATTTAAGAGATGAACTTTGATTCCATCAAAAACGGTAG-AAAG
1 TATGAGAATCCATGTTTGTCTTATTTAAGGGATAAACTTTGATT--TTAAAAAATGG--GCAAAG
* * * * ** * * * **
520583 AAAA-ACTTTTCTTGCGATACCAAAGCATCAATGTTAAGTATCCTAAAGA-AAGGAATGCAT-TT
62 AAAAGA-TTTCCATGCAAAAGAAAAGCATCAATATCATGTATCCTATTGAGAA-GAAT--ATGTT
* * * ** * **
520645 T-T-GGTTCCCAATCTTGAAAAGAATGGAGATTGT
123 TATAGCTGCCTAATC-ACAAAAGAATGAAGATCAT
* * * * *
520678 TATAAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGAAAAGA
1 TATGAGAATCCATGTTTGTCTTATTTAAGGGATAAACTTTGATTTTAA--AAAAT-GGGCAAAGA
* * * * * *
520743 AAAGATTTCCATGCAAAAGAAAATCTTCAATATCATTTATCCTAATGAGAAGAATGTGCTTATAG
63 AAAGATTTCCATGCAAAAGAAAAGCATCAATATCATGTATCCTATTGAGAAGAATATGTTTATAG
*
520808 -TGCCTAATCATAAAATGAATGAAGATCAT
128 CTGCCTAATCACAAAA-GAATGAAGATCAT
** * * * * * * *
520837 TACT-AGAATCCATGTTTGTCACATTTCAGGCATGAACTTAGACTTTACAAAAATTGGC-AGGAA
1 TA-TGAGAATCCATGTTTGTCTTATTTAAGGGATAAACTTTGATTTTA-AAAAATGGGCAAAGAA
* * * * * ** *
520900 AA-ATGCCTTCCTTGC-GAAGCCAAAGCATCCATATCGTGTATCCTGCTGAGAAGACTATGTTTA
64 AAGAT---TTCCATGCAAAAG-AAAAGCATCAATATCATGTATCCTATTGAGAAGAATATGTTTA
* **
520963 T-GGTGCCTAATC-CTGAAAA-AATTGGGGAAT-AT
125 TAGCTGCCTAATCAC--AAAAGAA-TGAAG-ATCAT
* * * * * *
520995 TATGAGTATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAATGGTGGAAAGA
1 TATGAGAATCCATGTTTGTCTTATTTAAGGGATAAACTTTGATT-T-TAAAAAATGG-GCAAAGA
* * * * * * ** ** * *
521060 AAAGCTTTTCTTACGACACCAAAGCATCAATGCCATGTATCCTATTGA-AAGGAATATGTTTTTG
63 AAAGATTTCCATGCAAAAGAAAAGCATCAATATCATGTATCCTATTGAGAA-GAATATGTTTATA
* ** **
521124 GCT-CCCAATCTTGAAAAGAATGGAA-ATTTT
127 GCTGCCTAATC-ACAAAAGAAT-GAAGATCAT
* *
521154 TATGAGAATCGATGCTTGTCTTATTTAAGGGATAAACTTTG-TTTTGAAGGAAAATAGGGCAAAG
1 TATGAGAATCCATGTTTGTCTTATTTAAGGGATAAACTTTGATTTT-AA--AAAAT-GGGCAAAG
* * * * *
521218 AAAAGATTTCCATGCAAAAGAAAATCATTAATATCATTTATCCTATTGAGGAGAATGTGTTTATA
62 AAAAGATTTCCATGCAAAAGAAAAGCATCAATATCATGTATCCTATTGAGAAGAATATGTTTATA
*
521283 GCT-CCTAATCACAAAATGAATGAAGATCAA
127 GCTGCCTAATCACAAAA-GAATGAAGATCAT
* * * * * *
521313 TACT-AGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAAT
1 TA-TGAGAATCCATGTTTGTCTTATTTAAGGGATAAACTTTGATTTTA-AAAAAT
521367 TGGTGTGGAA
Statistics
Matches: 1087, Mismatches: 297, Indels: 194
0.69 0.19 0.12
Matches are distributed among these distances:
155 4 0.00
156 23 0.02
157 109 0.10
158 289 0.27
159 601 0.55
160 39 0.04
161 20 0.02
162 2 0.00
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.31
Consensus pattern (156 bp):
TATGAGAATCCATGTTTGTCTTATTTAAGGGATAAACTTTGATTTTAAAAAATGGGCAAAGAAAA
GATTTCCATGCAAAAGAAAAGCATCAATATCATGTATCCTATTGAGAAGAATATGTTTATAGCTG
CCTAATCACAAAAGAATGAAGATCAT
Found at i:522685 original size:158 final size:158
Alignment explanation
Indices: 521548--523711 Score: 529
Period size: 159 Copynumber: 13.6 Consensus size: 158
521538 CAAGAATCCT
* * * *
521548 TGTTTGTCTCATTTGAG-GTACAAACTTAGACTTTACAAAAATTGGTGGAAA-AAATGCCTTTCT
1 TGTTTGTCTTATTTAAGAG-ACAAACTTAGA-TTTACAAAAATTGGTGGAAAGAAAAGCTTTTCT
* * * * * *
521611 TTTAAAACGAAAAACATCAATATCGTATATCCTAATGGGAAGACCTTATTTATGGTGCCTAATCC
64 TATGAAAC-CAAAACATCAATATCATATATCCTAATGGGAAGACCATGTTTATGGTGCCTAATCC
* * *
521676 TAAAAGGCATAGG-GATTAGTATGAGTATTCA
128 TAAAAAGAAT-GGAGATCAGTATGAGTATTCA
* *
521707 TGTTTGTCTTATTTAAGAGACAAACATT-GATTCTATCAAAAA-CGGTGAAAAGAAAAGCTTTTC
1 TGTTTGTCTTATTTAAGAGACAAAC-TTAGATT-TA-CAAAAATTGGTGGAAAGAAAAGCTTTTC
* * * *** *** * * *
521770 TTGA-GACACCAAAGCATCAATGTCA-AGTATCCTAA-AAAAAGGATTGTGTTT-TACGTTCCCA
63 TT-ATGAAACCAAAACATCAATATCATA-TATCCTAATGGGAA-GACCATGTTTAT-GGTGCCTA
* * * ** *
521831 ATCCTAAAAATATTGGAGAT-TGTAACAAG-AATCGA
124 ATCCTAAAAAGAATGGAGATCAGT-ATGAGTATTC-A
* * * ** * * * *
521866 GGCTTGTCTTATTTAAGGGATGAAC-TATGATTTTA-AGGAAAA-TAGAGCAAAGAAAAG-ATTT
1 TGTTTGTCTTATTTAAGAGACAAACTTA-GA-TTTACA--AAAATTGGTGGAAAGAAAAGCTTTT
* ** * * **
521927 C-CATGCAAAAAAAAAAATCATCAATATGATTTATCCTAATGAGG-AGA--ATGTGCTTATAATG
62 CTTATG---AAACCAAAA-CATCAATATCATATATCCTAATG-GGAAGACCATGT--TTATGGTG
* * * * *
521988 CCTAATCAC-AAAAGGAATGAAGATC-GTTACT-AGAATCCT
120 CCTAATC-CTAAAAAGAATGGAGATCAG-TA-TGAGTATTCA
* ** * * *
522027 TGTTTGTCTCATTTAAGTCACAAACATAGACTTTACAAAAATTGGTGTG-AA-AAATGCCTTTCT
1 TGTTTGTCTTATTTAAGAGACAAACTTAGA-TTTACAAAAATTGGTG-GAAAGAAAAGCTTTTCT
* * *
522090 TATGAAACCAAAACATAAATATCATATATCCTAAAGGGAAGACCATGTTTATGGTGCCTAATCCC
64 TATGAAACCAAAACATCAATATCATATATCCTAATGGGAAGACCATGTTTATGGTGCCTAATCCT
* * *
522155 AAAAAGAATGGGGATTAGTATGAGTATTTA
129 AAAAAGAATGGAGATCAGTATGAGTATTCA
* * * * *
522185 GGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAA-CGGTAGAAAGAAAAGCTTTTCT
1 TGTTTGTCTTATTTAAGAGACAAACTTAGATT-TA-CAAAAATTGGTGGAAAGAAAAGCTTTTCT
* * * * * * *** *
522249 TACGACACCAAAGCAAT-AATGTCA-AGTATCCTAA-AGAAAGGATTGTGTTT-TAGGTTCCTAA
64 TATGAAACCAAAAC-ATCAATATCATA-TATCCTAATGGGAA-GACCATGTTTAT-GGTGCCTAA
* * * * * *
522310 TCTTGAAAATATTAGAGA-CAGTAATGAG-AATCGA
125 TCCTAAAAAGAATGGAGATCAGT-ATGAGTATTC-A
* * ** ** * * *
522344 TGCTTGTCTTATTTAAGGGATGAA-TTATGATTTTGAGGAAAATAGG-GCAAAGAAAAG-ATTTC
1 TGTTTGTCTTATTTAAGAGACAAACTTA-GA-TTT-ACAAAAATTGGTGGAAAGAAAAGCTTTTC
* ** * * *
522406 -AATGCAAAAGAAAATCATCAATATCAT-TAATCCCAATGAGAAGA--ATGTGCTTATAGTGCCT
63 TTATG-AAACCAAAA-CATCAATATCATAT-ATCCTAATGGGAAGACCATGT--TTATGGTGCCT
* * * * * *
522467 AATCATAAAATGAATGAAGATCATTACT-AGAATCCA
123 AATCCTAAAAAGAATGGAGATCAGTA-TGAGTATTCA
* ** * * *
522503 TGTTTGTCTCATTCGAGA-AGCAAACTTAGATATTACAAAAATTGGTGGGAA-AAATGCTTTTGT
1 TGTTTGTCTTATTTAAGAGA-CAAACTTAGAT-TTACAAAAATTGGTGGAAAGAAAAGCTTTTCT
* * *
522566 TGTGAAACCAAAACATCAATATCATATATCCTAATGGGAAGACCATATTTATGGTGCATAATCCT
64 TATGAAACCAAAACATCAATATCATATATCCTAATGGGAAGACCATGTTTATGGTGCCTAATCCT
* *
522631 AAAAAGAATGGGGATTAGTATGAGTATTCA
129 AAAAAGAATGGAGATCAGTATGAGTATTCA
* ** *
522661 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTACAAAAAACGGTGGAAAAAAAAAGCTTTTCT
1 TGTTTGTCTTATTTAAGAGACAAACTTAGATT-TACAAAAATTGGTGG-AAAGAAAAGCTTTTCT
* * * * * * * *** * *
522726 TACGACACCAAAGCAAT-AAT-GCCTAGTATCCTAA-AGAAAGGATTGTGTTTA-GGTTCCCAA-
64 TATGAAACCAAAAC-ATCAATATCATA-TATCCTAATGGGAA-GACCATGTTTATGGTGCCTAAT
* * * * * *
522786 CTCTGAAAATAATGGAGA-CTGCTATGAGAAGTGA
126 C-CTAAAAAGAATGGAGATCAG-TATGAGTATTCA
** * * * * * * *
522820 TGTTCATCTTATTTAAGGGATAAACTTTGATTATA-AGGAGAATAGG-GCAAAGAAAAG-ATTTC
1 TGTTTGTCTTATTTAAGAGACAAACTTAGATT-TACA--AAAATTGGTGGAAAGAAAAGCTTTTC
* ** ** *** **
522882 CT-TGCAAAAAAAAATCATCAATATCACT-TATCCTAATGAAAAGAATGTGTTTACAGTGCCTAA
63 TTATG-AAACCAAAA-CATCAATATCA-TATATCCTAATGGGAAGACCATGTTTATGGTGCCTAA
* * * * ** *
522945 TCCTAAAATGAATGAAGATCA-TTTCTAAAATCCA
125 TCCTAAAAAGAATGGAGATCAGTAT-GAGTATTCA
* ** *
522979 TGTTTGTCTCT-TTTTAG-GCACAAACTTAGACTTTACAAAAATTGGTGGGGAGAAAA-CCTTTC
1 TGTTTGTCT-TATTTAAGAG-ACAAACTTAGA-TTTACAAAAATTGGTGGAAAGAAAAGCTTTTC
** * * * * ** ** ** * *
523041 TTGCGAAAACGAAGCATTAATATCACGTATCCTAATAAGAAGAATATGTTTATTGTGCCTAATCT
63 TTATGAAACCAAAACATCAATATCATATATCCTAATGGGAAGACCATGTTTATGGTGCCTAATCC
* ** * * **
523106 TGAAAAG-ATTAAGGATTAGCATGACAATTCA
128 TAAAAAGAATGGA-GATCAGTATGAGTATTCA
* * * * * *
523137 AGTTTGTCTTATTTAAGAGACAAACTTTGATTCCACAAAACACT-ATGGAAAGAAAAGCTTTTCC
1 TGTTTGTCTTATTTAAGAGACAAACTTAGATT-TACAAAA-ATTGGTGGAAAGAAAAGCTTTTCT
** * * * * * * *** * * * *
523201 TGCGATACCAAAGCATCAATGTCCTATATCCTATTGAGG-GGAATGTGTTTTTGGTTCCCAATCA
64 TATGAAACCAAAACATCAATATCATATATCCTAATG-GGAAGACCATGTTTATGGTGCCTAATCC
* * *
523265 TGAAAAGAATGGAGAT-TGTTATGAG-AATCGA
128 TAAAAAGAATGGAGATCAG-TATGAGTATTC-A
* * ** * * * *
523296 TGCTTGT-TTATTTAAGGGATGAACAATA-ATTTTA-AGGAAAATAGG-GCAAAGAAAAG-ATTT
1 TGTTTGTCTTATTTAAGAGACAAAC-TTAGA-TTTACA--AAAATTGGTGGAAAGAAAAGCTTTT
* ** ** * * *
523356 C-CATGCAAAATAAAATTGTCAATATCATTTAT-CTCAATGAGAAGA--ATGTGCTTATAGTGCC
62 CTTATG-AAACCAAAA-CATCAATATCATATATCCT-AATGGGAAGACCATGT--TTATGGTGCC
* * * * * *
523417 TAATCATAAAATGAATGAAGATCATTACT-AGAATCCA
122 TAATCCTAAAAAGAATGGAGATCAGTA-TGAGTATTCA
* * * * * * * *
523454 TGTTTGTCTTTTTTGAG-GCACGAACTTAGACATTACAAATATTGGCGGGAA-AAACG-TCTTTC
1 TGTTTGTCTTATTTAAGAG-ACAAACTTAGA-TTTACAAAAATTGGTGGAAAGAAAAGCT-TTTC
** * * * * * * *** * *
523516 TGGTGAAATCAAAGCATCACTATCGTGTATCTTAATCATAAGACCATGTTTATGGTGCTTAATCT
63 TTATGAAACCAAAACATCAATATCATATATCCTAATGGGAAGACCATGTTTATGGTGCCTAATCC
* * * *
523581 TGAAAAGAATGG-GAATTAGTATGTGCATTCA
128 TAAAAAGAATGGAG-ATCAGTATGAGTATTCA
* * ****
523612 TGTTTGTTTTATTTAAGAGACAAACTTTGATTCTATC-AAAAGCAATGGAAAGAAAAGCTTTTCT
1 TGTTTGTCTTATTTAAGAGACAAACTTAGATT-TA-CAAAAATTGGTGGAAAGAAAAGCTTTTCT
* * *** * *
523676 TACGACACCAAAGTGTCAATGTCATGTATCCTAATG
64 TATGAAACCAAAACATCAATATCATATATCCTAATG
523712 AAGGGAATGT
Statistics
Matches: 1422, Mismatches: 431, Indels: 304
0.66 0.20 0.14
Matches are distributed among these distances:
156 6 0.00
157 52 0.04
158 552 0.39
159 593 0.42
160 129 0.09
161 78 0.05
162 12 0.01
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.31
Consensus pattern (158 bp):
TGTTTGTCTTATTTAAGAGACAAACTTAGATTTACAAAAATTGGTGGAAAGAAAAGCTTTTCTTA
TGAAACCAAAACATCAATATCATATATCCTAATGGGAAGACCATGTTTATGGTGCCTAATCCTAA
AAAGAATGGAGATCAGTATGAGTATTCA
Found at i:523454 original size:475 final size:474
Alignment explanation
Indices: 521518--524030 Score: 2915
Period size: 476 Copynumber: 5.3 Consensus size: 474
521508 TTGATTCCAC
* * * *
521518 AAAATGAATTAAGATCATTACAAGAATCCTTGTTTGTCTCATTTGAGGTACAAACTTAGACTTTA
1 AAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTA
* * * * * *
521583 CAAAAATTGGTGGAAAAAATGCCTTTCTTTTAAAACGAAAAACATCAATATCGTATATCCTAATG
66 CAAAAATTGGTGGGAAAAA-GCCTTTCTTGTGAAAC-CAAAACATCAATATCATATATCCTAATA
* * * * *
521648 GGAAGACCTTATTTATGGTGCCTAATCCTAAAAGGCATAGGGATTAGTATGAGTATTCATGTTTG
129 AGAAGACCATGTTTATGGTGCCTAATCCTAAAAAGAATAGGGATTAGTATGAGTATTCATGTTTG
* *
521713 TCTTATTTAAGAGACAAACATTGATTCTATCAAAAACGGTGAAAAGAAAAGCTTTTCTTGA-GAC
194 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTT-ACGAC
* * * *
521777 ACCAAAGCATCAATGT-CAAGTATCCTAAAAAAAGGATTGTGTTTTACGTTCCCAATCCTAAAAA
258 ACCAAAGCATCAATGTCCTAGTATCCTAAAGAAAGGATTGTGTTTTAGGTTCCCAAT-CTGAAAA
* * * ** *
521841 TATTGGAGATTGTAACAAGAATCGAGGCTTGTCTTATTTAAGGGATGAACTATGATTTTAAGGAA
322 TAATGGAGACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTATGATTTTAAGGAA
* * *
521906 AATAGAGCAAAGAAAAGATTTCCATGCAAAAAAAAAAATCATCAATATGATTTATCCTAATGAGG
387 AATAGGGCAAAGAAAAGATTTCCATGC--AAAAAAAAATCATCAATATCATTTATCC-AATGAGA
* *
521971 AGAATGTGCTTATAATGCCTAATCAC
449 AGAATGTGCTTATAGTGCCTAATCAT
* * * * * *
521997 AAAAGGAATGAAGATCGTTACTAGAATCCTTGTTTGTCTCATTTAAGTCACAAACATAGACTTTA
1 AAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTA
* * *
522062 CAAAAATTGGTGTGAAAAATGCCTTTCTTATGAAACCAAAACATAAATATCATATATCCTAA-AG
66 CAAAAATTGGTGGGAAAAA-GCCTTTCTTGTGAAACCAAAACATCAATATCATATATCCTAATA-
* * * * *
522126 GGAAGACCATGTTTATGGTGCCTAATCCCAAAAAGAATGGGGATTAGTATGAGTATTTAGGTTTG
129 AGAAGACCATGTTTATGGTGCCTAATCCTAAAAAGAATAGGGATTAGTATGAGTATTCATGTTTG
* *
522191 TCTTATTTAAGAGATAAACTTTGATTCTATCAAAAACGGTAGAAAGAAAAGCTTTTCTTACGACA
194 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACA
* *
522256 CCAAAGCAAT-AATGT-CAAGTATCCTAAAGAAAGGATTGTGTTTTAGGTTCCTAATCTTGAAAA
259 CCAAAGC-ATCAATGTCCTAGTATCCTAAAGAAAGGATTGTGTTTTAGGTTCCCAATC-TGAAAA
* * * * * *
522319 TATTAGAGACAGTAATGAGAATCGATGCTTGTCTTATTTAAGGGATGAATTATGATTTTGAGGAA
322 TAATGGAGACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTATGATTTTAAGGAA
* * *
522384 AATAGGGCAAAGAAAAGATTTCAATGCAAAAGAAAATCATCAATATCATTAATCCCAATGAGAAG
387 AATAGGGCAAAGAAAAGATTTCCATGCAAAAAAAAATCATCAATATCATTTAT-CCAATGAGAAG
522449 AATGTGCTTATAGTGCCTAATCAT
451 AATGTGCTTATAGTGCCTAATCAT
* *
522473 AAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTCGA-GAAGCAAACTTAGA-TAT
1 AAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCA-CAAACTTAGACT-T
* *
522536 TACAAAAATTGGTGGGAAAAATGCTTTTGTTGTGAAACCAAAACATCAATATCATATATCCTAAT
64 TACAAAAATTGGTGGGAAAAA-GCCTTTCTTGTGAAACCAAAACATCAATATCATATATCCTAAT
** * * *
522601 GGGAAGACCATATTTATGGTGCATAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTT
128 AAGAAGACCATGTTTATGGTGCCTAATCCTAAAAAGAATAGGGATTAGTATGAGTATTCATGTTT
*
522666 GTCTTATTTAAGAGACAAACTTTGATTCTA-CAAAAAACGGTGGAAAAAAAAAGCTTTTCTTACG
193 GTCTTATTTAAGAGACAAACTTTGATTCTATC-AAAAACGGTGG-AAAGAAAAGCTTTTCTTACG
522730 ACACCAAAGCAAT-AATG-CCTAGTATCCTAAAGAAAGGATTGTG-TTTAGGTTCCCAACTCTGA
256 ACACCAAAGC-ATCAATGTCCTAGTATCCTAAAGAAAGGATTGTGTTTTAGGTTCCCAA-TCTGA
* * * * *
522792 AAATAATGGAGACTGCTATGAGAAGT-GATG-TTCATCTTATTTAAGGGATAAACTTTGATTATA
319 AAATAATGGAGACTGTTATGAGAA-TCGATGCTT-GTCTTATTTAAGGGATGAACTATGATTTTA
* * *
522855 AGGAGAATAGGGCAAAGAAAAGATTTCCTTGCAAAAAAAAATCATCAATATCACTTATCCTAATG
382 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAAAAAATCATCAATATCATTTATCC-AATG
* * * *
522920 AAAAGAATGTGTTTACAGTGCCTAATCCT
446 AGAAGAATGTGCTTATAGTGCCTAATCAT
* * * *
522949 AAAATGAATGAAGATCATTTCTAAAATCCATGTTTGTCTCTTTTTAGGCACAAACTTAGACTTTA
1 AAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTA
* * * * * **
523014 CAAAAATTGGTGGGGAGAAAA-CCTTTCTTGCGAAAACGAAGCATTAATATCACGTATCCTAATA
66 CAAAAATTGGT-GGGA-AAAAGCCTTTCTTGTGAAACCAAAACATCAATATCATATATCCTAATA
** * * * * * * ** *
523078 AGAAGAATATGTTTATTGTGCCTAATCTTGAAAAGATTAAGGATTAGCATGACAATTCAAGTTTG
129 AGAAGACCATGTTTATGGTGCCTAATCCTAAAAAGAATAGGGATTAGTATGAGTATTCATGTTTG
* ** * * *
523143 TCTTATTTAAGAGACAAACTTTGATTCCA-CAAAACACTATGGAAAGAAAAGCTTTTCCTGCGAT
194 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAA-ACGGTGGAAAGAAAAGCTTTTCTTACGAC
** ** * *
523207 ACCAAAGCATCAATGTCCTA-TATCCTATTGAGGGGAATGTGTTTTTGGTTCCCAATCATGAAAA
258 ACCAAAGCATCAATGTCCTAGTATCCTAAAGAAAGGATTGTGTTTTAGGTTCCCAATC-TGAAAA
* * * *
523271 GAATGGAGATTGTTATGAGAATCGATGCTTGT-TTATTTAAGGGATGAACAATAATTTTAAGGAA
322 TAATGGAGACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTATGATTTTAAGGAA
* **
523335 AATAGGGCAAAGAAAAGATTTCCATGCAAAATAAAATTGTCAATATCATTTATCTCAATGAGAAG
387 AATAGGGCAAAGAAAAGATTTCCATGCAAAAAAAAATCATCAATATCATTTATC-CAATGAGAAG
523400 AATGTGCTTATAGTGCCTAATCAT
451 AATGTGCTTATAGTGCCTAATCAT
** * *
523424 AAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTTTTTTGAGGCACGAACTTAGACATTA
1 AAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTA
* * * * * * * * * * *
523489 CAAATATTGGCGGGAAAAACGTCTTTCTGGTGAAATCAAAGCATCACTATCGTGTATCTTAATCA
66 CAAAAATTGGTGGGAAAAA-GCCTTTCTTGTGAAACCAAAACATCAATATCATATATCCTAATAA
* * * * * *
523554 TAAGACCATGTTTATGGTGCTTAATCTTGAAAAGAAT-GGGAATTAGTATGTGCATTCATGTTTG
130 GAAGACCATGTTTATGGTGCCTAATCCTAAAAAGAATAGGG-ATTAGTATGAGTATTCATGTTTG
* * **
523618 TTTTATTTAAGAGACAAACTTTGATTCTATCAAAAGCAATGGAAAGAAAAGCTTTTCTTACGACA
194 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACA
** * * * * *
523683 CCAAAGTGTCAATGTCAT-GTATCCTAATGAAGGGAATGTGATTTAGGTTCCCAACTCTGAAAAT
259 CCAAAGCATCAATGTCCTAGTATCCTAAAGAAAGGATTGTGTTTTAGGTTCCCAA-TCTGAAAAT
* * * * * * * *
523747 AGTGGATACTGCTATGAGAATCGATGCTCGTATTATTTAAGGGATAAACTTTGATTATAAGGAAA
323 AATGGAGACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTATGATTTTAAGGAAA
* * * * * * ** * *
523812 ATAGGGCAAA-AAAAAATTTCCTTGCAAAAGAAAATCTTTAATATCACTTATTATAATGAGGATA
388 ATAGGGCAAAGAAAAGATTTCCATGCAAAAAAAAATCATCAATATCATTTA-TCCAATGAGAAGA
* *
523876 ATGTGCTTAGAGTGCCTAATCAC
452 ATGTGCTTATAGTGCCTAATCAT
* * * * * *
523899 AAAAAGAATAAAGATCGTTACTAGAATCCATGTTTGTCTAATTTGAGGCACGAACATAGACTTTA
1 AAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTA
* * * * ** *
523964 TAAAAATTGGTGGGGAAAAAGCCTTTCTTGAGAATCCAAAGCATCAATATCACGTATGCTAATAA
66 CAAAAATTGGT-GGGAAAAAGCCTTTCTTGTGAAACCAAAACATCAATATCATATATCCTAATAA
524029 GA
130 GA
524031 GGCACGAACT
Statistics
Matches: 1751, Mismatches: 247, Indels: 76
0.84 0.12 0.04
Matches are distributed among these distances:
473 4 0.00
474 8 0.00
475 607 0.35
476 686 0.39
477 76 0.04
478 279 0.16
479 91 0.05
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.31
Consensus pattern (474 bp):
AAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTA
CAAAAATTGGTGGGAAAAAGCCTTTCTTGTGAAACCAAAACATCAATATCATATATCCTAATAAG
AAGACCATGTTTATGGTGCCTAATCCTAAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTC
TTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACACC
AAAGCATCAATGTCCTAGTATCCTAAAGAAAGGATTGTGTTTTAGGTTCCCAATCTGAAAATAAT
GGAGACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTATGATTTTAAGGAAAATA
GGGCAAAGAAAAGATTTCCATGCAAAAAAAAATCATCAATATCATTTATCCAATGAGAAGAATGT
GCTTATAGTGCCTAATCAT
Found at i:524253 original size:188 final size:187
Alignment explanation
Indices: 523886--524224 Score: 450
Period size: 188 Copynumber: 1.8 Consensus size: 187
523876 ATGTGCTTAG
* * *
523886 AGTGCCTAATCACAAAAAGAATAAAGATCGTTACTAGAATCCATGTTTGTCTAATTTGAGGCACG
1 AGTGCCTAATCACAAAAAGAATAAAGATCATTACTAAAATCCATGTTTCTCTAATTTGAGGCACG
* **
523951 AACATAGACTTTATAAAAATTGGTGGGGAAAAAGCCTTTCTTGAGAATCCAAAGCATCAATATCA
66 AACATAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTGAGAAAACAAAGCATCAATATCA
* * * *
524016 CGTATGCTAATAAGAGGCACGAACTTAGACTTTACAAAAATGAAAAGAATGTTTTTAT
131 CGTATGCTAATAAGAAGCACCAACTTAGA-GTGACAAAAATGAAAAGAATGTTTTTAT
* * * *
524074 AGTGCCTAATCCCAAAATGAATGAAA-ATCATTTCTAAAATCCATGTTTCTCTCATTTGAGGCAC
1 AGTGCCTAATCACAAAAAGAAT-AAAGATCATTACTAAAATCCATGTTTCTCTAATTTGAGGCAC
* * * **
524138 GAACTTAGACTTTACAAAAATTGGTGGGGGAAAAGCCTTTCTTGCGAAAATGAAGCATCAATATC
65 GAACATAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTGAGAAAACAAAGCATCAATATC
*
524203 GCGTAT-CGTAATAAGAAG-ACCA
130 ACGTATGC-TAATAAGAAGCACCA
524225 TGTTTATGGT
Statistics
Matches: 131, Mismatches: 18, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
187 4 0.03
188 124 0.95
189 3 0.02
ACGTcount: A:0.38, C:0.17, G:0.18, T:0.27
Consensus pattern (187 bp):
AGTGCCTAATCACAAAAAGAATAAAGATCATTACTAAAATCCATGTTTCTCTAATTTGAGGCACG
AACATAGACTTTACAAAAATTGGTGGGGAAAAAGCCTTTCTTGAGAAAACAAAGCATCAATATCA
CGTATGCTAATAAGAAGCACCAACTTAGAGTGACAAAAATGAAAAGAATGTTTTTAT
Found at i:524838 original size:12 final size:12
Alignment explanation
Indices: 524821--524846 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
524811 GCGGCACCAA
524821 AGCATCAATGTC
1 AGCATCAATGTC
524833 AGCATCAATGTC
1 AGCATCAATGTC
524845 AG
1 AG
524847 TATCCTAAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.19, T:0.23
Consensus pattern (12 bp):
AGCATCAATGTC
Found at i:526035 original size:476 final size:475
Alignment explanation
Indices: 524054--540902 Score: 19618
Period size: 475 Copynumber: 35.5 Consensus size: 475
524044 ACTTTACAAA
* ** * * * *
524054 AATGAAAAGAATGTTTTTATAGTGCCTAATCCCAAAATGAATGAAAATCATTTCTAAAATCCATG
1 AATGAGAAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* *
524119 TTTCTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGGGAAAA-GCCTTTCTTGC
66 TTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT-GGGAAAAATGCCTTTCTTGC
*** * * *
524183 GAAAATGAAGCATCAATATCGCGTATCGTAATAAGAAGACCATGTTTATGGTGCCTAATCCTGAA
130 GAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACCATGTTTATGGTGCCTAATCCTGAA
* * ** * * *
524248 AAGAATAGGGATTTGTATGACAATTCATGTTTG-CTTTATTTAAGAGGCAAACTGTGATTCCATC
195 AAGAATGGGGATTAGTATGAGTATTCATGTTTGTC-TTATTTAAGAGACAAACTTTGATTCTATC
* * * * *
524312 AAAAACTGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATTAATGT-TAACTATCCTAAAGA
259 AAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCT-AGTATCCTAATGA
* * * * * * *
524376 ATGGAATGCGTTTTTGGATCCTAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGT
323 AGGGAATGTGTTTTAGGTTCC-AATCCTGAAAATAATGGAGACTGTTACGAGAATCGATGCTTGT
* *
524441 CTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGTGCAAAGAAAAGA-TTCTCATGCAAAA
387 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTC-CATGCAAAA
524505 GAAAATCATCAATATCATTTATCCT
451 GAAAATCATCAATATCATTTATCCT
* * * *
524530 AATGAGAAGAATGTGCTTATAGTGCTTAATCATAAAATGAATGAAAAGCATT--T---ATCCATG
1 AATGAGAAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* * * * * * **
524590 TTTATCTCATTTGAGGCACAAAATTAGACATGACAAAAATTGGTGGGAACAATG-CTTCTCTTAA
66 TTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTT-TCTTGC
* * * * * *
524654 AAAACCGAACCATTAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCAGAA
130 GAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACCATGTTTATGGTGCCTAATCCTGAA
* * * ** * *
524719 AAAAATGGGGATTAGGATGACTACCCATGTTTATCTTATTTAAGAGACAAACATTGATTCTATCA
195 AAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
* *
524784 AAAATGGTGGAAAGAAAAGCTTTTCTTGCGGCACCAAAGCATCAATGTCAGCATCAATGTCAGTA
260 AAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAA--T--G--TC----T-AGTA
* * * *
524849 TCCTAA-GCAAGGGAAAGTGTTTTAGGTTCCCATCATGAAAATAATGGAGACTGTTATGAGAATC
314 TCCTAATG-AAGGGAATGTGTTTTAGGTTCCAATCCTGAAAATAATGGAGACTGTTACGAGAATC
* * * * * * *
524913 GTTGCTTGTCTTATCTATA-GAATGAACTATGATTTTAAGGAAAATAGAGTAAAGAAAAGATTTT
378 GATGCTTGTCTTATTTA-AGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTC
* *
524977 CATGCAAAAGAAAATCATTAATATCGTTTATCCT
442 CATGCAAAAGAAAATCATCAATATCATTTATCCT
* *
525011 AATGAGGAGAATGTCCTT-TAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
1 AATGAGAAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* * * * * * * * **
525075 TTTGTCTCATTTGAGGTACGAACCTGGACTTTACAAAAATTGCTAGGAATAGTGCTTTTCTTAAG
66 TTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCG
* *
525140 AAACCAAAGCATCAATATCGTGTATCCTAATCAGAAGACCATGTTTATGGTGCTTAATCCTGAAA
131 AAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACCATGTTTATGGTGCCTAATCCTGAAA
* * * * *
525205 AGAATGGGGATTAGTATGTGTATTCATGTTTTTTTTATTTAAGAGACAAATTTTTATTCTATCAA
196 AGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAA
* * * * * ***
525270 TAGCGATGGAAAGAAATGCTTTTCTTACGACACCAAAGTGGCAATGTCATA-TATCCTAATGAAG
261 AAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC-TAGTATCCTAATGAAG
* *
525334 GGAATGTGTTTTAGGTTCCCAT--TGAAAATAATGGAGACTGCTACGAGAATCGATGCTTGTCTT
325 GGAATGTGTTTTAGGTTCCAATCCTGAAAATAATGGAGACTGTTACGAGAATCGATGCTTGTCTT
* ** * ** *
525397 ACTTAATAGATAAACTTTGATTTTAAGGAAAATAAAGCAAAGAAAAGATTTCCATGCAGAAGAAA
390 ATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
*
525462 ATCATCAATATCAATTATCCT
455 ATCATCAATATCATTTATCCT
*
525483 AATGAGAAGAATGTGCTTATAGTGCCTAATCATAAAATGAATGAAGATCATTA-TCAGAATCCAT
1 AATGAGAAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACT-AGAATCCAT
** * * ** *** * * **
525547 GTTTGTCTCATTTGAGATACGAACCTGGACTTTACAAAAATTATTGGGAATCGTGCTTTTCATAA
65 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGC
* * * * *
525612 GAAACCAAAGCATCAATATTGTGTATCCTAATGA-AAAAGCCTTGTTTATCGTGCCTAATCTTGA
130 GAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGA-CCATGTTTATGGTGCCTAATCCTGA
* * * * *
525676 AAAGAATGGGGATTAGGATGAGAACTCATGTTTGTCTTATTTAAGGGATAAACTTTGATTCTATC
194 AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
* * * * *
525741 AAAACCGGTAGAAAGAAAAGCTTTTTTTGTGACACCAAAGCATCAATGTCCTA-TATCCTACTGA
259 AAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGT-CTAGTATCCTAATGA
* * * * * * * * * *
525805 AAGGAGTGTGTTTTTGGTTAACAATCTTGTAAAGAATGGAGACTATTACGAGAATTGATGCTTAT
323 AGGGAATGTGTTTTAGGTT-CCAATCCTGAAAATAATGGAGACTGTTACGAGAATCGATGCTTGT
** * **
525870 CTTATTTAAAAGATAAACTTTGATTTTAAGGAAAATAAAGCAAAGAAAAGATTTCCATGCAAAAG
387 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG
*
525935 AAAATCATCAATATCAGTTATCCT
452 AAAATCATCAATATCATTTATCCT
* * * * * *
525959 ATTGAGAAAAATGTGCTTATAGTGCCTAATTATAAAATGAATGAAGATCATTACCAAAATCCATG
1 AATGAGAAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* * * * * *
526024 TTTGCCTCATTTGGGGCACGAACTTTGACATTACAAAAATTAGTGGG-AAAATGCCTTTCTTGCT
66 TTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCG
* *
526088 AAACCAAAGCATCAATATCGTGTACCCTAATGAGAAGACCATGTTTATGGTGCCTAATCCTAAAA
131 AAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACCATGTTTATGGTGCCTAATCCTGAAA
** * *
526153 AGAATAAGGATTAGTATGAGTATTCATGTTTATCTTATTTAAGAGATAAACTTTGATTCTATCAA
196 AGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAA
* * **
526218 AAACGGTGGAAAGAAAAGTTTTTCTTGCGACACCAAAGCATCAATGTC-AGTATCCTAATCAACA
261 AAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTAGTATCCTAATGAAGG
** * * * * *
526282 GCTTGTTTTTTAGGTTCCCATCCTGAAAATAATGGAGACTGTTATGAGAATCGATGCTGGTCTTG
326 GAATGTGTTTTAGGTTCCAATCCTGAAAATAATGGAGACTGTTACGAGAATCGATGCTTGTCTTA
* * * *
526347 TCTATGGAATGAA-TTATGATTTTAAGGAAAATAGGGCAAAGAAAGGATTTCCATGCAAAAGAAA
391 TTTAAGGGATGAACTT-TGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
* *
526411 ATCCTCAATATGATTTATCCT
455 ATCATCAATATCATTTATCCT
** * *
526432 ACAT-AGGGGAATGTGCTTATAGTGCCTAATAACAAAATGAATGAAGATCATTCCTAGAATCCAT
1 A-ATGAGAAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
* * * * *
526496 GTTTGTCACATTTGAGGCACAAACTTAGACTTCAGAAAAATTGGTGGG-AAAATGCCTTTGTTGC
65 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGC
* * **** * * * *
526560 AAAACCAAAACATCAATATCGCACCTCCTAATGAGGAGACTATGTTTACGGTGCCTAATCTTGAA
130 GAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACCATGTTTATGGTGCCTAATCCTGAA
* * ** * * *
526625 AAGAATAGGGATTAGCATGACAATTCATGTTTATCTTATTTAAGAGACAAACTTTGATTCCACCA
195 AAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
* * * * * *
526690 AAAACTGTGGATAGAAAAGCTTTTCTTGCGACCCCAAGGCATCAATGTC-ATTTATCCTATTGAA
260 AAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTA-GTATCCTAATGAA
* * * * * * *
526754 AGGAATGTGTTTTTGGTTCCCAATCTTGGAAAGAATGGAGATTGTTATGAGAATCGATGCTTGTC
324 GGGAATGTGTTTTAGGTT-CCAATCCTGAAAATAATGGAGACTGTTACGAGAATCGATGCTTGTC
* **
526819 TTATTGAAGGGATGAACTTTGGCTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
388 TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
* *
526884 AAACCATCAATATAATTTATCCT
453 AAATCATCAATATCATTTATCCT
* *
526907 AA-GTAGAAGAATGTGCTTATAGTGCCTAATCATAAAATGAATGAAGATCATTACTATAATCCAT
1 AATG-AGAAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
* * * *
526971 GTTTGTCTCATTTGGGGCACGAACTTTGACATTACAAAAATTGGTGGG-AAAATGCCTTTCTTGT
65 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGC
** *
527035 GAAAGTAAAGCATCAATATCGTGTATCCTAATAAGAAGACCATGTTTATGGTGCCTAATCCTGAA
130 GAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACCATGTTTATGGTGCCTAATCCTGAA
* * * *
527100 AAGAATGGGGACTAATATGAGTATTTATGTTTGTCTTATTTGAGAGACAAACTTTGATTCTATCA
195 AAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
* * * * * *
527165 AATACAGTGGAAAGAAAAGCTTTTCCTGTGACCCCAAAGCATCAATGTC-GGTATCCTAATGAAG
260 AAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTAGTATCCTAATGAAG
* * *
527229 AGAATGTGTTTTATGTTCCCATCCTGAAAATAATGGAGACTGTTACGAGAATCGATGCTTGTCTT
325 GGAATGTGTTTTAGGTTCCAATCCTGAAAATAATGGAGACTGTTACGAGAATCGATGCTTGTCTT
* * * * * * *
527294 ATATATGGAATGAACTATGATTTTGAGGAAAATAGGGCAAAAAAAAGGGTTTCCATGCAAAAGAA
390 ATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAA-GATTTCCATGCAAAAGAA
* *
527359 AATCATCAATATGATTTACCCT
454 AATCATCAATATCATTTATCCT
* * * *
527381 AATGTGGAGAATGTGCTTATAATGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTTG
1 AATGAGAAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* * * * * * **
527446 TTTGTCTCATTCGAGGAATGAACTTAAACATTACAAAAATTGGTGGGAAAAATGCCTTTATTTTG
66 TTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCG
* * * * * *
527511 AAACCAAAACATCAATATCATATATCCTAATGGGAAGACCATATTTATGGTGCCTAATCCTAAAA
131 AAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACCATGTTTATGGTGCCTAATCCTGAAA
* **
527576 AGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATTGA
196 AGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAA
* * * * * *
527641 AAACGCTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATATCAAGTATCCTAAAGAAAG
261 AAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTAGTATCCTAATGAAGG
*
527706 GATTGTGTTTTAGGTTCCCAATCC---------T----A-----A--AGAATCGATGCTTGTCTT
326 GAATGTGTTTTAGGTT-CCAATCCTGAAAATAATGGAGACTGTTACGAGAATCGATGCTTGTCTT
* * * *
527751 ATTTAAGGGATGAACTATGATTTTAAGGAAAATAGAGCAAAGAAAAGATTTTCATGCAAAAAAAA
390 ATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
*
527816 ATCATCAATATGATTTATCCT
455 ATCATCAATATCATTTATCCT
* * * * * * *
527837 AATGAGGAGAATGTGCTTATAATGCTTAATCACAAAATGAATGAATATCATTACTTGATTCCTTG
1 AATGAGAAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* * *
527902 TTTGTCTTATTTGAGGCACAAACTGAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCG
66 TTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCG
* * * * * * *
527967 AAACTAAAACATCAATATCATATATCCTAATTG-GAAAACCATGTTTATGGTGCCTAACCCTAAA
131 AAACCAAAGCATCAATATCGTGTATCCTAA-TGAGAAGACCATGTTTATGGTGCCTAATCCTGAA
* * * *
528031 AAGAATGGGGATTAGTCTGAGTAATCATGTTTGTCTTATTGAAGAGACAAACTTTGATTCTATCC
195 AAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
* * * * * * * * *
528096 AAAACAGTGGAAACAAAAACTTTTCTTACGACAGCAAAGCATCAATGTCAAGTATCCAAAAGAAA
260 AAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTAGTATCCTAATGAAG
* * * * * * * * * *
528161 GGATTGTGTTTTAGCTTCCTAATCCTAAAAATATTGGAGACTATAAC-AAAATTCAATGCTCGCC
325 GGAATGTGTTTTAGGTTCC-AATCCTGAAAATAATGGAGACTGTTACGAGAA-TCGATGCTTGTC
** ** *
528225 TTATTTAAGGGATGAACAATGATTTTAA-GAAAATAGATCACAGAAAAGATTTCCATGCAAAAGA
388 TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
*
528289 AAATCATCAATATGATTTATCCT
453 AAATCATCAATATCATTTATCCT
* * * * *
528312 AATGAGGAGAATGTGCTTATAATGCCTATTCACACAAA-GAATGAAGATCATTACTGGAATCCTT
1 AATGAGAAGAATGTGCTTATAGTGCCTAATCACA-AAATGAATGAAGATCATTACTAGAATCCAT
* ** *
528376 ATTTGTCTCATTTGAGGCATAAACTTACACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGC
65 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGC
* ** * * *
528441 GAAACCAAAACATCAATATCGCATATCCTAATTG-GAAGACCATGCTTATGGTGCCTTATCCTAA
130 GAAACCAAAGCATCAATATCGTGTATCCTAA-TGAGAAGACCATGTTTATGGTGCCTAATCCTGA
528505 AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
194 AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
* * * *
528570 CAAAACGGTGGGAAGAAAAGCTTTTCTTGCGAGACCAAAGCATCAATGTCAAGTATCCTAATGAA
259 AAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTAGTATCCTAATGAA
* * ** * ** * *
528635 GGGAATGTGTTTTAGCTTCCCAATCCAGAAAATAATGGAGACAATTACAAGAATCTTTACTTGTT
324 GGGAATGTGTTTTAGGTT-CCAATCCTGAAAATAATGGAGACTGTTACGAGAATCGATGCTTGTC
* * * * *
528700 TTATTTAAGGGTTGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAATATTTCCACGCAAAAAA
388 TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGC--AAAA
* *
528765 GAAAATCATCATTATCATTTACCCT
451 GAAAATCATCAATATCATTTATCCT
* * * * * * * *
528790 AATAAGGAGAATGCGTTTATAGTACCTAATCACAAAATGAGTGAAAATCGTTACTAGAATCCATG
1 AATGAGAAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
**
528855 TTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGTT
66 TTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCG
* * * * * *
528920 AAACCAAAACATCAATATCGCGTATCGTAATGAAAAGACCATGTTTATGATGCCTAATCCTAAAA
131 AAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACCATGTTTATGGTGCCTAATCCTGAAA
* * * ** * * *
528985 AGAAGGGGGATTAGCACGACAATTCATGTTTGTCTTATTTACGAGACAAACTTTTATTCAATCAA
196 AGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAA
* * *
529050 AAACTGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGATGTTAAGTATCCTAAAGA
261 AAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATG-T-CT-AGTATCCTAATGA
* * * * ** *
529115 AGAGAATGTGTTTTTGGTTCCTAATCTTGAAAAAAATGGAGACTGTTATTAGAATCGATGCTTAT
323 AGGGAATGTGTTTTAGGTTCC-AATCCTGAAAATAATGGAGACTGTTACGAGAATCGATGCTTGT
*
529180 CTTATTTAAGGCATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG
387 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG
* *
529245 AAATTCATCAATATCATTTATGCT
452 AAAATCATCAATATCATTTATCCT
* * ** *
529269 AATGAGAAGAATGTGCTTATAATGCCTCATCTTAAAATGAAAGAAGATCATTACTAGAATCCATG
1 AATGAGAAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* * * * * * * * * **
529334 TCTGTCT-TTTCTCAGGCATGAAGTTAGTCATTACAAAAATTGGTGGGAACAATGCTTTTCTTAA
66 TTTGTCTCATT-TGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGC
* *
529398 TAAACCAAACCATCAATATCGTGTATCCTAATGAGAAGACCATGTTTATGGTGCCTAATCCTGAA
130 GAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACCATGTTTATGGTGCCTAATCCTGAA
* * * * * *
529463 AAGAATAGGGATTAGCT-TGAGTACTCATTTTTGTCATA-TTATTGAGACAAACTTTGATTCAAT
195 AAGAATGGGGATTAG-TATGAGTATTCATGTTTGTCTTATTTA-AGAGACAAACTTTGATTCTAT
* * * *
529526 CAAAAATGGTGGAAAAAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC-ATGTATACT-GTA
258 CAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTA-GTATCCTAAT-
* * * *
529589 GAAGGGAATGTGTTTTCGGTTCCCAATCCAGAAAATAATGGGGA-TCGCTACGAGAATCGATGCT
321 GAAGGGAATGTGTTTTAGGTT-CCAATCCTGAAAATAATGGAGACT-GTTACGAGAATCGATGCT
* *
529653 TGTCTTATTTAAGGGATGAACTATGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAA
384 TGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAA
** ** *
529718 AAGAAAATTGTCGGTATCATTCATCCT
449 AAGAAAATCATCAATATCATTTATCCT
* *
529745 AATGAGAAGAATGTGCTTATAGTGCCTAATCATAAAATGAATGAAGATCATTACTAGATTCCATG
1 AATGAGAAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* * * * * *
529810 TTTTTCTTATTTGAGGCATGAACTTAGACATTGCAAAAATTGGTGGGAAAAATGCCTTTTTTGCG
66 TTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCG
* ** *
529875 -----ATA-C--C-A-A--GTGTAAGCTAATGAGAAAACCATGTTTATGGTGCCTAATCCTGAAA
131 AAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACCATGTTTATGGTGCCTAATCCTGAAA
* * * * *
529928 AGAATGGGGATTAGTATAAGTATTCTTGTTTGTGTTATTTAAGAGACAAAGTTTGATTGTATCAA
196 AGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAA
* * * * *
529993 AAATGGTGGAAACAAAAACTTTTCTTGCGACACCAAAGCATCAATGT-TAGTGTCCTAA-GTAGG
261 AAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTAGTATCCTAATG-AAG
* * *
530056 GGAAAGTGTTTTAGGTTCCCATCCTGAAAATAATGGAGACTGTTACGAGATTCGATGCTTGTCTT
325 GGAATGTGTTTTAGGTTCCAATCCTGAAAATAATGGAGACTGTTACGAGAATCGATGCTTGTCTT
* * * ** * * * * *
530121 ATCTATGGAAAAAACTATGATTTTATGGAAAAAAAGGCAAAGAAAATATTTCCATGCAAAAGAAA
390 ATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
530186 ATCATCAATATCATTTATCCT
455 ATCATCAATATCATTTATCCT
* * * *
530207 AATGAGGAGAATGTTCTT-TAGGGCCTAATCACAAAATGAATGAACATCATTACTAGAATCCATG
1 AATGAGAAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* *** * * * * * * **
530271 TTTGTATCATTTGAGTTTCAAACTTAGACTTTACAAAAATTGCTAGGAACAGTGCTTTTCTTAAG
66 TTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCG
* * * * * *
530336 AAACCAAGGCATCAATATCGTGT-TCCTAATGAAAAGAGCTTGTTTATGGTGCTTAATCTTGAAA
131 AAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACCATGTTTATGGTGCCTAATCCTGAAA
* * *
530400 AGAATGGGGATTAGGATGAGTACTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTATATCAA
196 AGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAA
* * *
530465 AAACGGTGGAAAGAAAAGCATTTCTTGTGACACCAAAGCATCAATGTCCT-GTATCCTATTGAAG
261 AAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGT-CTAGTATCCTAATGAAG
* * * * *
530529 GGAATGTGATTTT-GGTTCCTAATCTTAAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTT
325 GGAATGTG-TTTTAGGTTCC-AATCCTGAAAATAATGGAGACTGTTACGAGAATCGATGCTTGTC
* * * * * * * *
530593 TTTTTTAACGGATAAACCTTGATTTTAGGGAAAATAAGGTAAGGAAAAGATTTCCATGCAAAAGA
388 TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
*
530658 AAATCATCAATATCATTTATCAT
453 AAATCATCAATATCATTTATCCT
* * * *
530681 AATGAGAAGAATGTGCTCATAGT-CCTAATCATAAAATGAATGAAGATCATTTCTAAAATCCATG
1 AATGAGAAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* *
530745 TTTGTCTCATTTGAGGCACGAACTTAGACCTTACAAAAATTGGTGGGGGAAAA-GCCTTTCTTGC
66 TTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT-GGGAAAAATGCCTTTCTTGC
*** * * *
530809 GAAAATGAAGCATCAATATCGTGCATCGTAATAAGAAGACCATGTTTATGGTGCCTAATCCTGAA
130 GAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACCATGTTTATGGTGCCTAATCCTGAA
** ** * * * *
530874 AAGAATAAGGATTAGTATGACAATTCATGTTTGTCTTCTTTAGGAGGCAAACTTTGATTCCATCA
195 AAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
* * * *
530939 AAAACTGTGGAAAGAAAAGCTTTTCTT-CTGACACCAAAGCGTCAATGT-TATTGTCCTAA-GTA
260 AAAACGGTGGAAAGAAAAGCTTTTCTTGC-GACACCAAAGCATCAATGTCTAGTATCCTAATG-A
* * * * *
531001 GGGGAAAGTGTTTTAGGTTCCCATTCCTGAAAATATTGGAGACTATTACGAGAATCGAT-CATTG
323 AGGGAATGTGTTTTAGGTT-CCAATCCTGAAAATAATGGAGACTGTTACGAGAATCGATGC-TTG
* * * * * *
531065 TCTTATCTATGGAATGAACTATGATTTTAAGGAAAATAAGGCGAAGAAAAGATTTCCATGCAAAA
386 TCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAA
531130 GAAAATCATCAATATCATTTATCCT
451 GAAAATCATCAATATCATTTATCCT
* * * *
531155 AATGA-AGAGAACGTGCTT-TAGTGCTTAATCACAAAATGAATGAAGATCATTACTAGAATACAC
1 AATGAGA-AGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
* ** * *** * * * **
531218 GTTTGACTCATTTGAGTTACGAACTTAGACTTTATAAAAATTGCCAGGAACAGTGCTTTTCTTAA
65 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGC
* * * * * *
531283 GAAACCAAAGCATCAATGTCGTGTATCCTAATGAGAAGAGCTTGTTTATGATGCTTAATCTTGAA
130 GAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACCATGTTTATGGTGCCTAATCCTGAA
* * *
531348 AAGAATGGGGATTAGGATGAGTACTCATGTTTGTCTTATTTAAGAGACAAACATTGATTCTATCA
195 AAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
* * *
531413 AAAACGGTGGAAAGAAAAGCATTTCTTGTGACACCAAAGCATCAATGTCCT-GTATCCTATTGAA
260 AAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGT-CTAGTATCCTAATGAA
* * * * ** *
531477 GGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGATTGTTATTAGAATTGATGCTTGTC
324 GGGAATGTGTTTTAGGTTCC-AATCCTGAAAATAATGGAGACTGTTACGAGAATCGATGCTTGTC
* * * *
531542 TTATTTAACGGATAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCAATGCAAAAGA
388 TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
*
531607 AAATCATCAATATCAATTATCCT
453 AAATCATCAATATCATTTATCCT
* * *
531630 AATGAAAAGAATGTGCTTATAGTGCCTAATCATAAAATGAAAGAAGATCATTACTAGAATCCATG
1 AATGAGAAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* * * * * *
531695 TTTGTCTCATTTGGGGCACGGACTTCGACATTACAAAAATTGGTAGGAAAAATGCCTTTCTTGCT
66 TTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCG
*
531760 AAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACCATGTTTATGGTGCCGAATCCTG-AA
131 AAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACCATGTTTATGGTGCCTAATCCTGAAA
* * *
531824 AGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTTTTTAAGAGATAAACTTTGATTCTATGAA
196 AGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAA
* * * * *
531889 AATCGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCAAGTATCCTAAAGAAAG
261 AAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTAGTATCCTAATGAAGG
* * * * * * *
531954 GATTGTGTTTTAGGTTCCCAATCCAGAAAATAATGGAGACTATTACAAGAATCGTTACTTGTTTT
326 GAATGTGTTTTAGGTT-CCAATCCTGAAAATAATGGAGACTGTTACGAGAATCGATGCTTGTCTT
* * * * *
532019 ATTTAAGGGTTGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAATATTTCCAGGCAAAAAAGA
390 ATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGC--AAAAGA
* *
532084 AAATCATCAATATCGTTTACCCT
453 AAATCATCAATATCATTTATCCT
* * * * *
532107 AACGAGGAGAATGTGTTTATAGTGCGTAATCACAAAATGAATGAAAATCATTACTAGAATCCATG
1 AATGAGAAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* *
532172 TTTGTCTCATTTGAGGCACGATCTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGTG
66 TTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCG
* * **
532237 AAACCGAAA-CATCAATATCGCGTATCGTAATGAGAAGACCATGTGAATGGTGCCTAATCCTGAA
131 AAACC-AAAGCATCAATATCGTGTATCCTAATGAGAAGACCATGTTTATGGTGCCTAATCCTGAA
* * ** ** *
532301 AAGAACGGGGACTAGTATGACAATTCATGTTTGTCTTATTTGCGAGACAAACTTTGATTCCATCA
195 AAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
** * *
532366 AAAACTATGGAAA-AAGAAGCTTTTCTTGCCACACCAAAGCATCAATGATGTTAAGTATCCT-AT
260 AAAACGGTGGAAAGAA-AAGCTTTTCTTGCGACACCAAAGCATCAATG-T-CT-AGTATCCTAAT
* * * * *
532429 AGAAGAGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACCGTTACGAGAATCGATGCT
321 -GAAGGGAATGTGTTTTAGGTT-CCAATCCTGAAAATAATGGAGACTGTTACGAGAATCGATGCT
* * * * * *
532494 TATCTTATTTAAGGCATAAACTTTGATTTTGAGGAAAATAGGGCCAA-AAAAGATTTCAATGCAA
384 TGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAA
532558 AAGAAAATCATCAATATCATTTATCCT
449 AAGAAAATCATCAATATCATTTATCCT
* * ** * *
532585 AATGAGAAGAATGTGCTTATAATGCCTCATCTTAAAATGAATAAAGATCTTTACTAGAATCCATG
1 AATGAGAAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* * * * * * * * * * *
532650 TCTGTCTTACTTCAGGCACGAAGTTAGTCATTACAAAAATTGGTGGGAACAATGCTTTTTTTAAC
66 TTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTT-GC
* * * * * *
532715 -AAACCGAACCCTCAGTATCGTGTATCCTAATGAGAAGACCATGTTTATAGTGCCTAATCTTGAA
130 GAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACCATGTTTATGGTGCCTAATCCTGAA
* * *
532779 AAGAATGGGGATTAAG-ATGAGTACTCATGTTTGTCATATTTAAGAGACAAACCTTGATTCTATC
195 AAGAATGGGGATT-AGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
* * * *
532843 AAAAATGGTGGAAAGAAAAGCTTTTCCTGCGACACCAAAGCATCAATGTC-ATGTATACT-GTAG
259 AAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTA-GTATCCTAAT-G
* * * * * *
532906 AAGGGAATGTGTTTTCGATTCCCAATCTTGAAAATAATGGGGATTGCTACGAGAATCGATGCTTG
322 AAGGGAATGTGTTTTAGGTT-CCAATCCTGAAAATAATGGAGACTGTTACGAGAATCGATGCTTG
* *
532971 TCTTTTTTAAGGGATGAACTATGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAA
386 TCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAA
* *
533036 GATAATCATCAATATCATTCATCCT
451 GAAAATCATCAATATCATTTATCCT
* *
533061 AATGAGAATAATGTG-TGTATAGTGCCTAATCATAAAATGAATGAAGATCATTACTAGAATCCAT
1 AATGAGAAGAATGTGCT-TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
* * * * *
533125 GTTTGTCACATTTGAGGCATGAGCTTAGACATTGCAAAAATTGGTGGGAAAAATGCCTTTCTTGC
65 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGC
* *
533190 G-----AAA-C--C-A-A--GTGTATGCTAATGAGAAAACCATGTTTATGGTGCCTAATCCTGAA
130 GAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACCATGTTTATGGTGCCTAATCCTGAA
* * * * *
533243 AA-AA-AGGGATTAGTATGAGTATTCTTGTTTGTGTTATTTAAGAGACAAAGTTTGATTGTATCA
195 AAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
* * * **
533306 AAAACGGTGGAAACAAAAACTTTTCTCT-CGGCACCAAAGCATCAATGT-TAGCGTCCTAA-GTA
260 AAAACGGTGGAAAGAAAAGCTTTTCT-TGCGACACCAAAGCATCAATGTCTAGTATCCTAATG-A
* * * * * *
533368 GGGGAAAGTGTTTTAGGTTCCTATCCTGAAAATAATGGAGACTATTATGAAAATCGATGCTTGTC
323 AGGGAATGTGTTTTAGGTTCCAATCCTGAAAATAATGGAGACTGTTACGAGAATCGATGCTTGTC
* * * * * * *
533433 TTATCTATGGAATGAACTATGATTTTGAGGAAAATAATGGCAAAGAAAAGATTTCCACGCAAAAG
388 TTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT-AGGGCAAAGAAAAGATTTCCATGCAAAAG
533498 AAAATCATCAATATCATTTATCCT
452 AAAATCATCAATATCATTTATCCT
* * * *
533522 AATGAGGAGAATGTG-TTTTAGTGCCTAATCACAGAATGAATG-AGATCAGTACTAGAATCCATG
1 AATGAGAAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
** * * * * * **
533585 TTTGTCTCATTTGAGTTACGAACTTAGACTTTATAAAAATTGCTGGGAACAGTGCTTTTCTTATG
66 TTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCG
* * * * *
533650 AAACCAAAGCATCAATATCGTGTATCCAAATGAGAAGAGCTTGTTTATGGTGCTTAATCTTGAAA
131 AAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACCATGTTTATGGTGCCTAATCCTGAAA
* *
533715 AGAATGGGGATTAGGATGAGTACTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAA
196 AGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAA
* * *
533780 AAACGGTGGAAAGAAAAGCATTTCTTGTGACACCAAAGCATCAATGTCCT-GTATCCTATTGAAG
261 AAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGT-CTAGTATCCTAATGAAG
* * * * ** *
533844 GGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGATTACTATGAGAATCGATGCTTGTCT
325 GGAATGTGTTTTAGGTTCC-AATCCTGAAAATAATGGAGACTGTTACGAGAATCGATGCTTGTCT
* * * * *
533909 TATTTAACGAATAAACTTTAATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAA
389 TATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAA
*
533974 AATCATCAATATCAATTATCCT
454 AATCATCAATATCATTTATCCT
* * * * *
533996 AATGAAAAGAATGTGCTTATAGTGCCTAATCATAAAATGAATGATGATCGTTACTAGAATCCTTG
1 AATGAGAAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* * *
534061 TTTGTCTCATTTG-GGACACGGACTTCGACATTACAAAAATTGGTGGGAAAAATGCCTTTCTTGC
66 TTTGTCTCATTTGAGG-CACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGC
* * *
534125 TAAACTACAGCATCAATATCGTGTATCCTAATGAGAAGACCATGTTTATGGTGCCTAATCCTGAA
130 GAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACCATGTTTATGGTGCCTAATCCTGAA
* *
534190 AAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTTTTTAAGAGATAAACTTTGATTCTATCA
195 AAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
* * * *
534255 AAAACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCAAGTATCCTAAAGAAA
260 AAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTAGTATCCTAATGAAG
* * * * * * * *
534320 GGATTGTGTTTTAGGTTCCCATTCTTGAAAATATTGGAGACTATAACAAGAATTGATGCTTGTCT
325 GGAATGTGTTTTAGGTT-CCAATCCTGAAAATAATGGAGACTGTTACGAGAATCGATGCTTGTCT
* **
534385 TATTTATGGGATGAACTTTGATTTTAAGGAAAATAGGATAAAGAAAAGATTTCCATGCAAAAGAA
389 TATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAA
*
534450 AATCATCAATATCTTTTATCCT
454 AATCATCAATATCATTTATCCT
* *
534472 AATGAGAAGAATGTGCTTATAGTGCCTAAT-ATTAAAATGAATGAAGATCATTACTAAAATCCAT
1 AATGAGAAGAATGTGCTTATAGTGCCTAATCA-CAAAATGAATGAAGATCATTACTAGAATCCAT
* * * * * *
534536 GTTTGTCTTATTTTAGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCGTGT
65 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGC
* * * * * *
534601 GAAACTAAAGCA-CTAATATCTTGTATCTTAGTGAGAAGACTATGTTTATAGTGCCTAATCCT-A
130 GAAACCAAAGCATC-AATATCGTGTATCCTAATGAGAAGACCATGTTTATGGTGCCTAATCCTGA
* * *
534664 AAAAAATGGAGATTAGTATGAGTATTCATGTTTTTCTTATTTAAGAGACAAACTTTGATTCTATC
194 AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
* *
534729 AAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAAGTATCCTAAAGAA
259 AAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTAGTATCCTAATGAA
* * * * * * * * *
534794 GGGAATGTATTTTTGGTTCCCAATCTTGAAAAGAGTGGAGATTATTACGAGAATCGACGCTTGTG
324 GGGAATGTGTTTTAGGTT-CCAATCCTGAAAATAATGGAGACTGTTACGAGAATCGATGCTTGTC
* *
534859 TTATTTAA--G--G-ACTTTGATTTTAAGGAAAATGGGGCAAAGAAAAGATTTCCATGAAAAAGA
388 TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
*
534919 AAATCATCAATATCATTTATTCT
453 AAATCATCAATATCATTTATCCT
* *
534942 AATGAGAAGAATGTGCTTGTAGTGCCTAATCATAAAATGAATGAAGATCATTACTAGAATCCATG
1 AATGAGAAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* * * * *
535007 CTTGAT-TCATTTGGGGCATGAACTTCGACATTACAAAAATTGGTGGGAAAAATGCCTTTCTTGC
66 TTTG-TCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGC
* *
535071 TAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACCATGTTTATGGTGCCGAATCCT-AA
130 GAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACCATGTTTATGGTGCCTAATCCTGAA
* *
535135 CAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTTTTTAAGAGATAAACTTTGATTCTATC
195 -AAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
** * *
535200 AAAAACGGTGGAAAGAAAAGCTTTTCTTGTAACACCAAAGCATCAATGTCAAGTATCCTAAAGAA
259 AAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTAGTATCCTAATGAA
* * * * * * * *
535265 AGGATTGTGTTTTAGGTTCCCAATCCAGAAAATAATGGAGACTATTACAAGAATCGTTACTTGTT
324 GGGAATGTGTTTTAGGTT-CCAATCCTGAAAATAATGGAGACTGTTACGAGAATCGATGCTTGTC
* * * *
535330 TTATTTAAGGGTTGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAATATTTCCATGCAAAAAA
388 TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGC--AAAA
* *
535395 GAAAATCATCAATATCGTTTACCCT
451 GAAAATCATCAATATCATTTATCCT
* * * *
535420 AATGAGGAGAATGTGCTTATAGTGCGTAATCACAAAATGAACGAAAATCATTACTAGAATCCATG
1 AATGAGAAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* * ** *
535485 TTTGTTTCATTTGCGGCACGAACTTCA-ACAATACAAAAATTAGTGGGAAAAATGCCTTTCTTGC
66 TTTGTCTCATTTGAGGCACGAACTT-AGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGC
* *
535549 TAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACCATGTTTATGGTGCCTAATCCTAAA
130 GAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACCATGTTTATGGTGCCTAATCCTGAA
* * * * *
535614 AAGAATGGAGATTAGTATGAGTATTCAT-TGTTGTCTTTTTTAAGCGATAAACTTTGATTCCATC
195 AAGAATGGGGATTAGTATGAGTATTCATGT-TTGTCTTATTTAAGAGACAAACTTTGATTCTATC
* * *
535678 AAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAAGTATCCTAAGGAA
259 AAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTAGTATCCTAATGAA
* * * * * * * * *
535743 AGGATTGTGTTTTAGGTTCCTATTCCTGAAAATATTTGAGACTATAACAAGAATCGATGCATGTC
324 GGGAATGTGTTTTAGGTTCC-AATCCTGAAAATAATGGAGACTGTTACGAGAATCGATGCTTGTC
**
535808 TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGATAAAGAAAAGATTTCCATGCAAAAGA
388 TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
535873 AAATCATCAATATCATTTATCCT
453 AAATCATCAATATCATTTATCCT
* * * * * *
535896 AATGATAGGAATATGCTTATAGTGTCTAAT-ATTAAAATGAATGAAGATCATTACTAAAATCCAT
1 AATGAGAAGAATGTGCTTATAGTGCCTAATCA-CAAAATGAATGAAGATCATTACTAGAATCCAT
* * * * * *
535960 GTTTGTCTTATTTTAGGCACAAACATAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGT
65 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGC
* * ** ** **
536025 GAAACTAAAGCA-CTAATATCTTGTATCCTAGCGAGAAGACTTTGTTTATATTGCCTAATCCT-A
130 GAAACCAAAGCATC-AATATCGTGTATCCTAATGAGAAGACCATGTTTATGGTGCCTAATCCTGA
* * * * *
536088 AAAAAATGGGGATTAGTATGAGTATTCCTGTTTTTCTTATTTTAGAGATAAACTTTGATTCTATC
194 AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
* * * * * * *
536153 AAAAACGGTGGAAAGGAAAGCTTTTCTTCCCACACCAAAGCATCATTGTCAAGTATTCTAAAGAA
259 AAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTAGTATCCTAATGAA
* * * * * * *
536218 GGGAATGTATTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTATTACGAGAATCGACGCTTGTC
324 GGGAATGTGTTTTAGGTT-CCAATCCTGAAAATAATGGAGACTGTTACGAGAATCGATGCTTGTC
*
536283 TTATTTAAGGGATGGACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
388 TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
536348 AAATCATCAATATCATTTATCCT
453 AAATCATCAATATCATTTATCCT
* * *
536371 AATGAGAAGATTGTGCTTATAGTGCCTAATCATAAAATGAATGAAGATCATTACTAGAGTCCATG
1 AATGAGAAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* * * * * *
536436 CTTGTCTCATTTGGGGCATGAACTTCGACATTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCT
66 TTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCG
* *
536501 AAACCAAAGCATCAATATCGTGTATCCTGATGAGAAGACCATGTTTATTGTGCCTAATCCTGAAA
131 AAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACCATGTTTATGGTGCCTAATCCTGAAA
* * *
536566 AGAATGGGGATTGGTATGAGTATTCATGTTTGTCTTTTTTAAGAGATAAACTTTGATTCTATCAA
196 AGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAA
* * ** * *
536631 AAATGGTGGAAAAAAAAGCTTTTCCCGTGACACCAAAGCATCAATGTC-AGTATCCTAATCAAGG
261 AAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTAGTATCCTAATGAAGG
* * * * *
536695 GAATGTTTTTTAGGTTCCCATCCTGAAAATAATGGAGACTATTATGAGAATTGATGCTTGTCTTA
326 GAATGTGTTTTAGGTTCCAATCCTGAAAATAATGGAGACTGTTACGAGAATCGATGCTTGTCTTA
* * * * *
536760 TCTATGGAATGAA-TTATGATTTTAAGGAAAATAAGTCAAAGAAAAGATTTCCATGCAAAA-AAA
391 TTTAAGGGATGAACTT-TGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
*
536823 ATCATCAATATGATTTATCCT
455 ATCATCAATATCATTTATCCT
** * * *
536844 AATGAGGGGATTGTACTTATAGTGCCTAAT-AGCAAAATGGATGAAGATCATT-CTTAGAATCCA
1 AATGAGAAGAATGTGCTTATAGTGCCTAATCA-CAAAATGAATGAAGATCATTAC-TAGAATCCA
* ** * * *
536907 TATTTGTCTCATTTGAGGTGCAAACTTAGACTTTAC-AAAATTGGTGGGAAAAATTCCTTTGTTG
64 TGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTG
* * **** * * * * *
536971 CAAAACCAAAACATCAATATCACACATTCTAATGAGGAGACTATGCTTATGGTGCCTAATCTTGA
129 CGAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACCATGTTTATGGTGCCTAATCCTGA
* ** ** * * * *
537036 AAAGAATAGGGATTAACATGACAATTCATGTTTGTCTTATTTAAGACATAAACTTTGATTCCACC
194 AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
** * * * * * * *
537101 AAAAACTATGGAAAGAAAAGCTTTTTTTGTGACGCCAAAGCGTCAATGTC-ATTTGTCCTATTGA
259 AAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTA-GTATCCTAATGA
* * * * * *
537165 AAGGAATGTGTTTTTA-GTTCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATGATTG
323 AGGGAATGTG-TTTTAGGTT-CCAATCCTGAAAATAATGGAGACTGTTACGAGAATCGATGCTTG
* * * ** *
537229 TC-TAATTGAGGAGATAAACTTTGGCTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCGTGCAAA
386 TCTTATTTAAGG-GATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAA
*
537293 AGAAAATCATCAATATGATTTATCCT
450 AGAAAATCATCAATATCATTTATCCT
* ** * * * *
537319 AATGGGGGGAATGTGCTTATAGTACCTAATTACAAAGTGAATGAAGATCATTCCTAGAATCCATG
1 AATGAGAAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
*
537384 TTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAAAATG-C---CTTGCG
66 TTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCG
* *** * * * * *
537445 AAACCAAAACATCAATATCGCACATCCTAATCAGGAGACTACGTTTATGGTGCCTAATCTTGAAA
131 AAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACCATGTTTATGGTGCCTAATCCTGAAA
* ** * *
537510 AGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAAACAAACTTTGATTCTACCAA
196 AGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAA
* * ** *
537575 AAACTGTGGAAAGAAATGCTTTTCTTGCGATC-TTAAAGCATCAATGT-TAGGTATCCTAAAGAA
261 AAACGGTGGAAAGAAAAGCTTTTCTTGCGA-CACCAAAGCATCAATGTCTA-GTATCCTAATGAA
* * * * * *
537638 GGGAATGTGTTTTTGGTTCCTAATCCTGAAAAGAATGGAGATTGTTATGAGATTCGATTCTTGTC
324 GGGAATGTGTTTTAGGTTCC-AATCCTGAAAATAATGGAGACTGTTACGAGAATCGATGCTTGTC
* * * *
537703 TTATTTAAGGGTTGAACTTTGATTTTAAGGAAAATAGGGTAGAGAAAAGATTTTCATGCAAAAGA
388 TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
*
537768 AAATCATCAGTATCATTTATCCT
453 AAATCATCAATATCATTTATCCT
* * *
537791 TATGAGAAGAATGTGCTTATA-TAGCCTAATCATAAAATGAATGAAGATCAATACTAGAATCCAT
1 AATGAGAAGAATGTGCTTATAGT-GCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
* * * * * *
537855 GTTTGTCTCATTTGGGGCAAGAAGTTCGACATTACAAAAATTGGTAGGAAAAATGCCTTTCTTGC
65 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGC
* * *
537920 TAAGCCAAAGCATCAATATCGTGTATCCTAATGAGAAGACCATGTTTATGGTGCCTAAT-CTCAA
130 GAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACCATGTTTATGGTGCCTAATCCT-GA
* * *
537984 AAAGAATGGGGATTAGAATGAGTATTCACGTTTGTCTTATTTAAGAGATTAAACTTTGATTCTAT
194 AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGA-CAAACTTTGATTCTAT
** *
538049 CAAAAATAGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC-AGTATCCTAATCA
258 CAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTAGTATCCTAATGA
* * * * *
538113 AGGGAATGT-TTTTCAAGTTCCTATGCAGAAAATAATGGAGACTGTTATGAGAATCGATGCTTGT
323 AGGGAATGTGTTTT-AGGTTCCAATCCTGAAAATAATGGAGACTGTTACGAGAATCGATGCTTGT
* * * * *
538177 CTTATCTATGGAATGAA-TTATGATTTTAATGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAA
387 CTTATTTAAGGGATGAACTT-TGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAA
*
538241 GAAAATCATCAATATGATTTATCCT
451 GAAAATCATCAATATCATTTATCCT
** * *
538266 AATGAGGGGAATGTGCTTATAGTGCCTAATCAAAAAATGAATGAAGATCATTCCTAGAATCCATG
1 AATGAGAAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* * * * *
538331 TTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAATTTGCTAGGAAAAATGCCTTTCTTGTG
66 TTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCG
* * * * * * *
538396 AAACCAAAGCGTCAATATCATGTATCCTAATCAAAAAACTATGTTTATGGTGCCTAATCCTAAAA
131 AAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACCATGTTTATGGTGCCTAATCCTGAAA
* * * *
538461 AGAATGGGGATTAGTATGTGTATTCGTTTTTGTCTTATTTAATAGACAAACTTTGATTCTATCAA
196 AGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAA
** * * *
538526 AAGTGGTAGAAAGAAAAGCTTTTCTTACGACACCAAAGCGTCAATGTC-ATGTATCCTAATGAAG
261 AAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTA-GTATCCTAATGAAG
* * * * *
538590 GGAATGTGTTTTAGGTTCCCAA-CTATGAAAATACTAGAGACTGCTACGAGAATCGATGCTCGTC
325 GGAATGTGTTTTAGGTT-CCAATC-CTGAAAATAATGGAGACTGTTACGAGAATCGATGCTTGTC
* * * * * * *
538654 ATATTTAAGGGATAAACTTTGATTATAAGGAAATTATGGCAAAGAAAAGATTTCCTTCCAAAAGA
388 TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
* **
538719 AAATCATTAATATCACCTATCCT
453 AAATCATCAATATCATTTATCCT
* * * * *
538742 AATGAAAAGAATGTGTTTATAGTGCCTAATCCCAAAATGAATGAAGATCATTTCTAAAATCCATG
1 AATGAGAAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* * * *
538807 TTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTAGTGGGGGAGAA-GCCTTTCTTGT
66 TTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT-GGGAAAAATGCCTTTCTTGC
* * * * * *
538871 AAAAACGAAGCATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATAGTGCCTAATCCCGAA
130 GAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACCATGTTTATGGTGCCTAATCCTGAA
* * * * * *
538936 AAGAATAGGGATTATTGTGAATGTTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCG
195 AAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
* * * * *
539001 AAAACAGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCACTGGTCAAGTATCCTAAAGAA
260 AAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAAT-GTCTAGTATCCTAATGAA
* * * * * *
539066 AGGATTGTGTTTTAGGTTCTCATTCCTAAAAATATTGGAGACTGTAACGAGAATCGATGCTTGTC
324 GGGAATGTGTTTTAGGTTC-CAATCCTGAAAATAATGGAGACTGTTACGAGAATCGATGCTTGTC
* * * *
539131 TTATTT-AGGAGATGAACTATGATTTTAAGGAAAACAGGGTAAAGAAAAGATTTCCATGGAAAAG
388 TTATTTAAGG-GATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG
*
539195 AAAATCATCAATATCATTTATGCT
452 AAAATCATCAATATCATTTATCCT
* * ** *
539219 AATGAGGAGAATGTGCTTAGAGTGAGTAATCACAAAATGAATGAAAATCATTACTAGAATCCATG
1 AATGAGAAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* * * * *
539284 TTTGTCTTATTTGAGGCATGAACTTAGACTTTACAAAAATAGGTGGGAAAAATGCCTTTCCTACG
66 TTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCG
* * * * * *
539349 AAACCAAAGCA-CTAATATTGTGTATCTTAATGAGAAGACTATGTTTATAGTGCCTAATTCTTAA
131 AAACCAAAGCATC-AATATCGTGTATCCTAATGAGAAGACCATGTTTATGGTGCCTAATCCTGAA
* * * * * * * *
539413 AAAAAGGGGGATTAATATGAGTATTCATCTTTGTCTTATGTAAGAGATAAACTTTGATTCAATTA
195 AAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
* * * * *
539478 AAAATGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAAGTATCCTAAAGAAA
260 AAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTAGTATCCTAATGAAG
* * * * * * *
539543 GGATTGTGTTTTAGGTTCCCAATCTTGAAAGTATTGGAGATTGTAACAAGAATCGATGCTTGTCT
325 GGAATGTGTTTTAGGTT-CCAATCCTGAAAATAATGGAGACTGTTACGAGAATCGATGCTTGTCT
* * * *
539608 TATTTAAGAGATGAACTATGATTTTAAGGAAAATAGAGCAAAGAAAAGATTTTCATGCAAAAGAA
389 TATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAA
* *
539673 AATCATTAATATGATTTATCCT
454 AATCATCAATATCATTTATCCT
* *
539695 AAGGAGGAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
1 AATGAGAAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* ** * * * *
539760 TTTGTGTCATTTGACACACGAACTTAGATTTTACAATAATTGGTGGGAAAAAAGCTTTTCTTGCG
66 TTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCG
* *
539825 AAACCAAAGCA-CTAATATCGTGTATCCTAATGAGAAGACTATGTTTATAGTGCCTAATCCT-AA
131 AAACCAAAGCATC-AATATCGTGTATCCTAATGAGAAGACCATGTTTATGGTGCCTAATCCTGAA
*
539888 AAGAAATGGGGATTAGTATGAG---TCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
195 AAG-AATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
* * * * *
539950 AAAAACGGTGGAAATAAAAGCTTTTCTTGTGACACCAAGGCACCAATGTCTTGTATCCTAATGAA
259 AAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTAGTATCCTAATGAA
** * * * * * * *
540015 GGGAATGTGTTTTAGGAGCCCAATCCTGAAAATATTGTAGACTATTACAAGAATCAATACTTGTT
324 GGGAATGTGTTTTAGG-TTCCAATCCTGAAAATAATGGAGACTGTTACGAGAATCGATGCTTGTC
* * * * * * *
540080 TTGTTTAAGGGTTGAATTTTGATTTTAAGGAAAATATGACAAAGAAAAGATTTTCATGCAGAAGA
388 TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
*
540145 AAATCATCAATATTATTTATCCT
453 AAATCATCAATATCATTTATCCT
* *
540168 AATGAGGAGAATGTGCTT-TAGTGCCTAATCACAAAATGAATGAAGACCATTACTAGAATCCATG
1 AATGAGAAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* * * * *
540232 GTTGTCTCATTTGAGGCACGAACTTAGGCTTTACAGAAATTGGTGAGAAAAATGCCTTTCTTGCA
66 TTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCG
* * * * * * * *
540297 AAACGAAAACATCAATATCATGTATCCTATTGAGAAGACCGTGTTAATGGTGCATAATCCTAAAA
131 AAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACCATGTTTATGGTGCCTAATCCTGAAA
** * *
540362 AGAATGGGGATTAGTATGACAATTCATGTTTATCTTATTTAAGAGACAAACTTTGATTCCATCAA
196 AGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAA
* * ** * * *
540427 AAACTGTGGAAAGAAAAGCTTTTTTTATGACACTAAAGCATCAATGTC-ATGCATCCTAATGAAC
261 AAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTA-GTATCCTAATGAAG
* * * * *
540491 GAAATGTGTTTTAGGTTCCCAATCCTGAAAATAATAGAAACTGCTACAAGAATCTG-TGCTTGTC
325 GGAATGTGTTTTAGGTT-CCAATCCTGAAAATAATGGAGACTGTTACGAGAATC-GATGCTTGTC
* * * * *
540555 TTATTTAAGGGATAAACTTTGATTATAAGGAAAATAGGGCAAAAAAAAAAGATTTTCTTGCAAAA
388 TTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGC--AAAGAAAAGATTTCCATGCAAAA
*
540620 -AAAATCATTAATATCATTTATCCT
451 GAAAATCATCAATATCATTTATCCT
* * * * * *
540644 AATGAAAATAATGTGTTTGTAGTGCCTAATCTCAAAATGAATGAAGATCATTTCTAGAATCCATG
1 AATGAGAAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* * * *
540709 TTTGTCTTATTTAAGGCACAAACTTAGACTTTACAAAAATTAGTGGGGAAAAA-GCCTTTCTTGC
66 TTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT-GGGAAAAATGCCTTTCTTGC
* * * *
540773 -AAGACCGAAGCATCAATATCGTGTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCTTGA
130 GAA-ACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACCATGTTTATGGTGCCTAATCCTGA
* * *
540837 AAAGAATGGGGATTAGTATGAGTATTCATGTTT-ACTTTTTTGAGAGACAAACTTTGATTCTATC
194 AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
540901 AA
259 AA
540903 TGTTTGTCTT
Statistics
Matches: 13971, Mismatches: 2134, Indels: 536
0.84 0.13 0.03
Matches are distributed among these distances:
455 2 0.00
456 343 0.02
457 60 0.00
459 72 0.01
460 92 0.01
461 174 0.01
462 219 0.02
463 27 0.00
464 184 0.01
465 5 0.00
466 3 0.00
467 3 0.00
468 4 0.00
469 3 0.00
470 245 0.02
471 435 0.03
472 1001 0.07
473 1243 0.09
474 1185 0.08
475 3099 0.22
476 2691 0.19
477 867 0.06
478 1105 0.08
479 289 0.02
480 44 0.00
481 341 0.02
482 31 0.00
483 1 0.00
485 201 0.01
486 2 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.31
Consensus pattern (475 bp):
AATGAGAAGAATGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
TTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTCTTGCG
AAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACCATGTTTATGGTGCCTAATCCTGAAA
AGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAA
AAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTAGTATCCTAATGAAGG
GAATGTGTTTTAGGTTCCAATCCTGAAAATAATGGAGACTGTTACGAGAATCGATGCTTGTCTTA
TTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
TCATCAATATCATTTATCCT
Found at i:531454 original size:159 final size:160
Alignment explanation
Indices: 530335--540902 Score: 1478
Period size: 159 Copynumber: 66.8 Consensus size: 160
530325 CTTTTCTTAA
* * * * * * *
530335 GAAACCAAGGCATCAATATCGTGT-TCCTAATGAAAAGAGCT-TGTTTATGGTGCTTAATCTTGA
1 GAAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGAGATGTGTTTATGATGCCTAATCTTGA
* * * *
530398 AAAGAATGGGGATTAGGATGAGTACTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTATATC
66 AAAGAATGGAGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
530463 AAAAACGGTGGAAAGAAAAGCATTTCTTGT
131 AAAAACGGTGGAAAGAAAAGCATTTCTTGT
* * * * * *
530493 GACACCAAAGCATCAATGTCCTGTATCCT-AT-TGAAGGGAATGTGATTT-TGGTTCCTAATCTT
1 GAAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGAG-ATGTG-TTTATGATGCCTAATCTT
* * * * * * * *
530555 AAAAAGAATGGAGATT-GTTACGAG-AATCGATGCTTGTTTTTTTTAACG-GATAAACCTTGATT
64 GAAAAGAATGGAGATTAG-TATGAGTATTC-ATGTTTGTCTTATTTAA-GAGACAAACTTTGATT
* ** * * * *
530617 TTAGGGAAAATAAGGT--AAGGAAAAG-ATTTCCATGC
126 CTA-TCAAAA-ACGGTGGAAAGAAAAGCATTT-CTTGT
* ** * * * * * * *
530652 AAAAGAAAATCATCAATATCATTTATCATAATGAGAAGA-ATGTGCTCAT-A-GTCCTAATCAT-
1 GAAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGAGATGTGTTTATGATG-CCTAATCTTG
* * * * ** * * * * * *
530713 AAAATGAATGAAGATCA-TTTCTAAAATCCATGTTTGTCTCATTTGAG-GCACGAACTTAGA-CC
65 AAAA-GAATGGAGATTAGTAT-GAGTATTCATGTTTGTCTTATTTAAGAG-ACAAACTTTGATTC
* ** * *
530775 T-TACAAAAATTGGTGG-GGGAAAAGCCTTTCTTGC
127 TAT-CAAAAA-CGGTGGAAAGAAAAGCATTTCTTGT
*** * * * * * * * *
530809 GAAAATGAAGCATCAATATCGTGCATCGTAATAAGAAGACCA--TGTTTATGGTGCCTAATCCTG
1 GAAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGA-GATGTGTTTATGATGCCTAATCTTG
* ** * * * *
530872 AAAAGAAT-AAGGATTAGTATGACAATTCATGTTTGTCTTCTTTAGGAGGCAAACTTTGATTCCA
65 AAAAGAATGGA-GATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
* * *
530936 TCAAAAACTGTGGAAAGAAAAGCTTTTCTTCT
129 TCAAAAACGGTGGAAAGAAAAGCATTTCTTGT
* * * * * * * * * *
530968 GACACCAAAGCGTCAATGTTAT-TGTCCTAAGTAGGGGAA-AG-TGT-TTTA-GGTTCCCATTCC
1 GAAACCAAAGCATCAATGTCATGTATCCTAA-T--GAGAAGAGATGTGTTTATGATGCCTAATCT
* * * * * * ** * * *
531028 TGAAAATATTGGAGACTATTACGAG-AATCGATCATTGTCTTATCTATG-GA-ATGAACTATGAT
63 TGAAAAGAATGGAGATTAGTATGAGTATTC-ATGTTTGTCTTATTTAAGAGACA--AACTTTGAT
* ** * * * *
531090 TTTAAGGAAAATAAGG-CG-AAGAAAAG-ATTTCCATGC
125 TCT-ATCAAAA-ACGGTGGAAAGAAAAGCATTT-CTTGT
* ** * * * * * *
531126 AAAAGAAAATCATCAATATCATTTATCCTAAT--GAAGAGAACGTGCTTTA-G-TGCTTAATC-A
1 GAAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGAG-ATGTG-TTTATGATGCCTAATCTT
* * * * * * * * * * ** * *
531186 CAAAATGAATGAAGATCATTACT-AGAATACACGTTTGACTCATTTGAGTTACGAACTTAGACTT
64 GAAAA-GAATGGAGATTAGTA-TGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA-TT
* ** * * * **
531250 -TAT-AAAAA--TTGCCAGGAACAGTGCTTTTCTTAA
126 CTATCAAAAACGGTGGAAAGAA-A-AGCATTTCTTGT
* * *
531283 GAAACCAAAGCATCAATGTCGTGTATCCTAATGAGAAGAGCT-TGTTTATGATGCTTAATCTTGA
1 GAAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGAGATGTGTTTATGATGCCTAATCTTGA
* * * *
531347 AAAGAATGGGGATTAGGATGAGTACTCATGTTTGTCTTATTTAAGAGACAAACATTGATTCTATC
66 AAAGAATGGAGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
531412 AAAAACGGTGGAAAGAAAAGCATTTCTTGT
131 AAAAACGGTGGAAAGAAAAGCATTTCTTGT
* * * * * * *
531442 GACACCAAAGCATCAATGTCCTGTATCCT-AT-TGAAGGGAATGTGTTTTTGGTTCCTAATCTTG
1 GAAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGAG-ATGTGTTTATGATGCCTAATCTTG
* * * * * *
531505 AAAAGAATGGAGATT-GTTATTAGAATTGATGCTTGTCTTATTTAACG-GATAAACTTTGATTTT
65 AAAAGAATGGAGATTAG-TATGAGTATTCATGTTTGTCTTATTTAA-GAGACAAACTTTGATTCT
** * * * *
531568 AAGGAAAATA-AG-GCAAAGAAAAG-ATTTCAATGC
128 -ATCAAAA-ACGGTGGAAAGAAAAGCATTTC-TTGT
* ** * * * * *
531601 AAAAGAAAATCATCAATATCAAT-TATCCTAATGAAAAGA-ATGTGCTTAT-AGTGCCTAATCAT
1 GAAACCAAAGCATCAATGTC-ATGTATCCTAATGAGAAGAGATGTGTTTATGA-TGCCTAATCTT
* * * * * * * * * ** * *
531663 -AAAATGAAAGAAGATCATTACT-AGAATCCATGTTTGTCTCATTT-GGGGCACGGACTTCGACA
64 GAAAA-GAATGGAGATTAGTA-TGAGTATTCATGTTTGTCTTATTTAAGAG-ACAAACTTTGA-T
* * *
531725 T-TA-CAAAAATTGGTAGG-AA-AAATGCCTTTCTTGCT
125 TCTATCAAAAA-CGGT-GGAAAGAAAAGCATTTCTTG-T
* * * * * *
531760 -AAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACCA--TGTTTATGGTGCCGAATCCTG
1 GAAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGA-GATGTGTTTATGATGCCTAATCTTG
* * *
531822 -AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTTTTTAAGAGATAAACTTTGATTCTAT
65 AAAAGAATGGAGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * *
531886 GAAAATCGGTGGAAAGAAAAGCTTTTCTTGT
130 CAAAAACGGTGGAAAGAAAAGCATTTCTTGT
* * * * * * **
531917 GACACCAAAGCATCAATGTCAAGTATCCTAAAGA-AAG-GATTGTGTTT-TAGGTTCCCAATCCA
1 GAAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGAGA-TGTGTTTAT-GATGCCTAATCTT
* * * ** * * * * *** * *
531979 GAAAATAATGGAGACTATTACAAG-AATCGT-TACTTGTTTTATTTAAGGGTTGAATTTTGATTT
64 GAAAAGAATGGAGATTAGTATGAGTATTCATGT--TTGTCTTATTTAAGAGACAAACTTTGATTC
** * * * **
532042 TAAGGAAAATA-AG-GCAAAGAAAA-TATTTCCAG-
127 T-ATCAAAA-ACGGTGGAAAGAAAAGCATTTCTTGT
** * * * * * * * *
532074 GCAAAAAAGAAAATCATCAATATCGTTTACCCTAACGAGGAGA-ATGTGTTTAT-AGTGCGTAAT
1 G----AAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGAGATGTGTTTATGA-TGCCTAAT
** * * * * * * * * * * *
532137 C-ACAAAATGAATGAAAATCATTACT-AGAATCCATGTTTGTCTCATTTGAG-GCACGATCTTAG
61 CTTGAAAA-GAATGGAGATTAGTA-TGAGTATTCATGTTTGTCTTATTTAAGAG-ACAAACTTTG
* * * *
532199 ACTT-TA-CAAAAATTGGTGGGAA-AAATGCCTTTCTTGT
123 A-TTCTATCAAAAA-CGGTGGAAAGAAAAGCATTTCTTGT
* ** * * * * *
532236 GAAACCGAAA-CATCAATATCGCGTATCGTAATGAGAAGACCATGTG--AATGGTGCCTAATCCT
1 GAAACC-AAAGCATCAATGTCATGTATCCTAATGAGAAGA-GATGTGTTTATGATGCCTAATCTT
* * * ** ** *
532298 GAAAAGAACGGGGACTAGTATGACAATTCATGTTTGTCTTATTTGCGAGACAAACTTTGATTCCA
64 GAAAAGAATGGAGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
** * *
532363 TCAAAAACTATGGAAA-AAGAAGCTTTTCTTGC
129 TCAAAAACGGTGGAAAGAA-AAGCATTTCTTGT
* * * * * * * *
532395 CACACCAAAGCATCAATGATGTTAAGTATCCT-AT-AGAAGAGAATGTGTTTTTGGTTCCCAATC
1 GAAACCAAAGCATC-A--ATGTCATGTATCCTAATGAGAAGAG-ATGTGTTTATGATGCCTAATC
** * * * * *
532458 TTGAAAAGAATGGAGA-CCGTTACGAG-AATCGATGCTTATCTTATTTAAG-GCATAAACTTTGA
62 TTGAAAAGAATGGAGATTAG-TATGAGTATTC-ATGTTTGTCTTATTTAAGAG-ACAAACTTTGA
* ** ** * *
532520 TTTTGAGGAAAATA-GG-GCCAA-AAAAG-ATTTCAATGC
124 TTCT-ATCAAAA-ACGGTGGAAAGAAAAGCATTTC-TTGT
* ** * * * * * *
532556 AAAAGAAAATCATCAATATCATTTATCCTAATGAGAAGA-ATGTGCTTATAATGCCTCATCTT-A
1 GAAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGAGATGTGTTTATGATGCCTAATCTTGA
** * * * * * * * * *
532619 AAATGAATAAAGATCT-TTACT-AGAATCCATGTCTGTCTTACTTCAG-GCACGAA-GTT-AGTC
66 AAA-GAATGGAGAT-TAGTA-TGAGTATTCATGTTTGTCTTATTTAAGAG-ACAAACTTTGATTC
* * * * * * **
532679 -ATTACAAAAATTGGTGGGAA-CAATGCTTTTTTTAA
127 TA-T-CAAAAA-CGGTGGAAAGAAAAGCATTTCTTGT
* * * * * * * *
532714 CAAACCGAACCCTCAGTATCGTGTATCCTAATGAGAAGACCA--TGTTTAT-AGTGCCTAATCTT
1 GAAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGA-GATGTGTTTATGA-TGCCTAATCTT
* * * *
532776 GAAAAGAATGGGGATTAAG-ATGAGTACTCATGTTTGTCATATTTAAGAGACAAACCTTGATTCT
64 GAAAAGAATGGAGATT-AGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
* * * *
532840 ATCAAAAATGGTGGAAAGAAAAGCTTTTCCTGC
128 ATCAAAAACGGTGGAAAGAAAAGCATTTCTTGT
* * * * * *
532873 GACACCAAAGCATCAATGTCATGTATACT-GT-AGAAGGGAATGTGTTT-TCGATTCCCAATCTT
1 GAAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGAG-ATGTGTTTAT-GATGCCTAATCTT
* * * * * * * ** * *
532935 GAAAATAATGGGGATT-GCTACGAG-AATCGATGCTTGTCTTTTTTAAGGGATGAACTATGATTT
64 GAAAAGAATGGAGATTAG-TATGAGTATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
** * *
532998 TAAGGAAAATA-GG-GCAAAGAAAAG-ATTTCCATG-
127 T-ATCAAAA-ACGGTGGAAAGAAAAGCATTT-CTTGT
* ** * * * * *
533031 CAAAAGATAATCATCAATATCAT-TCATCCTAATGAGAATA-ATGTGTGTAT-AGTGCCTAATCA
1 GAAACCA-AAGCATCAATGTCATGT-ATCCTAATGAGAAGAGATGTGTTTATGA-TGCCTAATCT
* * * * * ** * * *
533093 T-AAAATGAATGAAGATCATTACT-AGAATCCATGTTTGTCACATTT--GAGGCATGAGCTTAGA
63 TGAAAA-GAATGGAGATTAGTA-TGAGTATTCATGTTTGTCTTATTTAAGAGACA--AACTTTGA
* * * * *
533154 --C-ATTGCAAAAATTGGTGGGAA-AAATGCCTTTCTTGC
124 TTCTA-T-CAAAAA-CGGTGGAAAGAAAAGCATTTCTTGT
** * *
533190 GAAACC-AAG------TGT-ATG----CTAATGAGAA-A-ACCATGTTTATGGTGCCTAATCCTG
1 GAAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGAGA-TGTGTTTATGATGCCTAATCTTG
* * * * *
533241 AAAA-AAAGG-GATTAGTATGAGTATTCTTGTTTGTGTTATTTAAGAGACAAAGTTTGATTGTAT
65 AAAAGAATGGAGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * *
533304 CAAAAACGGTGGAAACAAAAACTTTTCTCTCG-
130 CAAAAACGGTGGAAAGAAAAGCATTTCT-T-GT
* * ** * * * *
533336 G-CACCAAAGCATCAATGTTA-GCGTCCTAAGTAGGGGAA-AG-TGT-TTTA-GGTTCCT-ATCC
1 GAAACCAAAGCATCAATGTCATGTATCCTAA-T--GAGAAGAGATGTGTTTATGATGCCTAATCT
* * * * * * * * *
533394 TGAAAATAATGGAGACTATTATGA-AAATCGATGCTTGTCTTATCTATG-GA-ATGAACTATGAT
63 TGAAAAGAATGGAGATTAGTATGAGTATTC-ATGTTTGTCTTATTTAAGAGACA--AACTTTGAT
* *** ** *
533456 T-T-TGAGGAAAATAATGGCAAAGAAAAG-ATTTCCACGC
125 TCTATCA--AAAACGGTGG-AAAGAAAAGCATTT-CTTGT
* ** * * * * **
533493 AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA-ATGTGTTT-T-AGTGCCTAATC-AC
1 GAAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGAGATGTGTTTATGA-TGCCTAATCTTG
* * * * * * ** * *
533554 AGAATGAAT-GAGATCAGTACT-AGAATCCATGTTTGTCTCATTTGAGTTACGAACTTAGACTT-
65 A-AAAGAATGGAGATTAGTA-TGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA-TTC
* * * * ** * *
533616 TAT-AAAAATTGCTGGGAA-CAGTGCTTTTCTTAT
127 TATCAAAAA-CGGTGGAAAGAAAAGCATTTCTTGT
* * * * * *
533649 GAAACCAAAGCATCAATATCGTGTATCCAAATGAGAAGAGCT-TGTTTATGGTGCTTAATCTTGA
1 GAAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGAGATGTGTTTATGATGCCTAATCTTGA
* * *
533713 AAAGAATGGGGATTAGGATGAGTACTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
66 AAAGAATGGAGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
533778 AAAAACGGTGGAAAGAAAAGCATTTCTTGT
131 AAAAACGGTGGAAAGAAAAGCATTTCTTGT
* * * * * * *
533808 GACACCAAAGCATCAATGTCCTGTATCCT-AT-TGAAGGGAATGTGTTTTTGGTTCCTAATCTTG
1 GAAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGAG-ATGTGTTTATGATGCCTAATCTTG
* * * * * *
533871 AAAAGAATGGAGATTACTATGAG-AATCGATGCTTGTCTTATTTAACGA-ATAAACTTTAATTTT
65 AAAAGAATGGAGATTAGTATGAGTATTC-ATGTTTGTCTTATTTAA-GAGACAAACTTTGATTCT
** * * * *
533934 AAGGAAAATA-AG-GCAAAGAAAAG-ATTTCCATGC
128 -ATCAAAA-ACGGTGGAAAGAAAAGCATTT-CTTGT
* ** * * * * *
533967 AAAAGAAAATCATCAATATCAAT-TATCCTAATGAAAAGA-ATGTGCTTAT-AGTGCCTAATCAT
1 GAAACCAAAGCATCAATGTC-ATGTATCCTAATGAGAAGAGATGTGTTTATGA-TGCCTAATCTT
* * * * * ** * ** *
534029 -AAAATGAAT-GATGA-TCGTTACT-AGAATCCTTGTTTGTCTCATTTGGGACACGGACTTCGAC
64 GAAAA-GAATGGA-GATTAG-TA-TGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA-
* * * * *
534090 AT-TA-CAAAAATTGGTGGGAA-AAATGCCTTTCTTGCT
124 TTCTATCAAAAA-CGGTGGAAAGAAAAGCATTTCTTG-T
* * * * * * *
534126 -AAACTACAGCATCAATATCGTGTATCCTAATGAGAAGACCA--TGTTTATGGTGCCTAATCCTG
1 GAAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGA-GATGTGTTTATGATGCCTAATCTTG
* * *
534188 AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTTTTTAAGAGATAAACTTTGATTCTAT
65 AAAAGAATGGAGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
*
534253 CAAAAACGGTGGAAAGAAAAGCTTTTCTTGT
130 CAAAAACGGTGGAAAGAAAAGCATTTCTTGT
* * * * * * *
534284 GACACCAAAGCATCAATGTCAAGTATCCTAAAGA-AAG-GATTGTGTTT-TAGGTTCCCATTCTT
1 GAAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGAGA-TGTGTTTAT-GATGCCTAATCTT
* * * ** * * * * * ** *
534346 GAAAATATTGGAGACTA-TAACAAGAATTGATGCTTGTCTTATTTATGGGATGAACTTTGATTTT
64 GAAAAGAATGGAGATTAGT-ATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
** * *
534410 AAGGAAAATA-GGAT--AAAGAAAAG-ATTTCCATGC
128 -ATCAAAA-ACGG-TGGAAAGAAAAGCATTT-CTTGT
* ** * * * * * *
534443 AAAAGAAAATCATCAATATCTTTTATCCTAATGAGAAGA-ATGTGCTTAT-AGTGCCTAATATT-
1 GAAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGAGATGTGTTTATGA-TGCCTAATCTTG
* * * ** * * *
534505 AAAATGAATGAAGATCATTACT-AAAATCCATGTTTGTCTTATTTTAG-GCACAAACTTAGACTT
65 AAAA-GAATGGAGATTAGTA-TGAGTATTCATGTTTGTCTTATTTAAGAG-ACAAACTTTGA-TT
* * * *
534568 -TA-CAAAAATTGGTGGGAA-AAAAGCCTTTCGTGT
126 CTATCAAAAA-CGGTGGAAAGAAAAGCATTTCTTGT
* * * * * * * *
534601 GAAACTAAAGCA-CTAATATCTTGTATCTTAGTGAGAAGA-CTATGTTTAT-AGTGCCTAATCCT
1 GAAACCAAAGCATC-AATGTCATGTATCCTAATGAGAAGAGATGTGTTTATGA-TGCCTAATCTT
* *
534663 -AAAAAAATGGAGATTAGTATGAGTATTCATGTTTTTCTTATTTAAGAGACAAACTTTGATTCTA
64 GAAAAGAATGGAGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
* *
534727 TCAAAAACGGTGGAAAGAAAAGCTTTTCTTGC
129 TCAAAAACGGTGGAAAGAAAAGCATTTCTTGT
* * * * * * * *
534759 GACACCAAAGCATCAATGTCAAGTATCCTAA--AGAAGGGAATGTATTTTTGGTTCCCAATCTTG
1 GAAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGAG-ATGTGTTTATGATGCCTAATCTTG
* * * * * * * *
534822 AAAAGAGTGGAGATTATTACGAG-AATCGACGCTTGTGTTATTTAAG-G----ACTTTGATTTTA
65 AAAAGAATGGAGATTAGTATGAGTATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
*** * * *
534881 AGGAAAATGG-GGCAAAGAAAAG-ATTTCCATGA
129 TCAAAAACGGTGG-AAAGAAAAGCATTT-CTTGT
* ** * * * * *
534913 AAAAGAAAATCATCAATATCATTTATTCTAATGAGAAGA-ATGTGCTTGTA-G-TGCCTAATCAT
1 GAAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGAGATGTG-TT-TATGATGCCTAATCTT
* * * * * * * * * *
534975 -AAAATGAATGAAGATCATTACT-AGAATCCATGCTTGAT-TCATTT--GGGGCATGAACTTCGA
64 GAAAA-GAATGGAGATTAGTA-TGAGTATTCATGTTTG-TCTTATTTAAGAGACA--AACTTTGA
* * * * *
535035 CAT-TA-CAAAAATTGGTGGGAA-AAATGCCTTTCTTGCT
124 -TTCTATCAAAAA-CGGTGGAAAGAAAAGCATTTCTTG-T
* * * * * *
535072 -AAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACCA--TGTTTATGGTGCCGAATCCT-
1 GAAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGA-GATGTGTTTATGATGCCTAATCTTG
* * *
535133 AACAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTTTTTAAGAGATAAACTTTGATTCTA
65 AA-AAGAATGGAGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
*
535198 TCAAAAACGGTGGAAAGAAAAGCTTTTCTTGT
129 TCAAAAACGGTGGAAAGAAAAGCATTTCTTGT
* * * * * *
535230 -AACACCAAAGCATCAATGTCAAGTATCCTAAAGA-AAG-GATTGTGTTT-TAGGTTCCCAATCC
1 GAA-ACCAAAGCATCAATGTCATGTATCCTAATGAGAAGAGA-TGTGTTTAT-GATGCCTAATCT
* * * * ** * * * * *** *
535291 AGAAAATAATGGAGACTATTACAAG-AATCGT-TACTTGTTTTATTTAAGGGTTGAATTTTGATT
63 TGAAAAGAATGGAGATTAGTATGAGTATTCATGT--TTGTCTTATTTAAGAGACAAACTTTGATT
* ** * * * * *
535354 TTAAGGAAAATA-AG-GCAAAGAAAA-TATTTCCATGCAA
126 CT-ATCAAAA-ACGGTGGAAAGAAAAGCATTT-CTTG--T
* ** * * * * * * * * **
535391 AAAAGAAAATCATCAATATCGTTTACCCTAATGAGGAGA-ATGTGCTTAT-AGTGCGTAATC-AC
1 GAAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGAGATGTGTTTATGA-TGCCTAATCTTG
* * * * * * * ** * * *
535453 AAAATGAACGAAAATCATTACT-AGAATCCATGTTTGT-TTCATTTGCG-GCACGAAC-TTCA-A
65 AAAA-GAATGGAGATTAGTA-TGAGTATTCATGTTTGTCTT-ATTTAAGAG-ACAAACTTTGATT
* ** * * *
535513 CAATACAAAAATTAGTGGGAA-AAATGCCTTTCTTGCT
126 CTAT-CAAAAA-CGGTGGAAAGAAAAGCATTTCTTG-T
* * * * * *
535550 -AAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACCA--TGTTTATGGTGCCTAATCCTA
1 GAAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGA-GATGTGTTTATGATGCCTAATCTTG
* * * *
535612 AAAAGAATGGAGATTAGTATGAGTATTCAT-TGTTGTCTTTTTTAAGCGATAAACTTTGATTCCA
65 AAAAGAATGGAGATTAGTATGAGTATTCATGT-TTGTCTTATTTAAGAGACAAACTTTGATTCTA
* * *
535676 TCAAAAATGGTGGAAAGAAAAGCTTTTCTTGC
129 TCAAAAACGGTGGAAAGAAAAGCATTTCTTGT
* * * * * * *
535708 GACACCAAAGCATCAATGTCAAGTATCCTAAGGA-AAG-GATTGTGTTT-TAGGTTCCTATTCCT
1 GAAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGAGA-TGTGTTTAT-GATGCCTAATCTT
* * * * ** * ** * ** *
535770 GAAAATATTTGAGACTA-TAACAAG-AATCGATGCATGTCTTATTTAAGGGATGAACTTTGATTT
64 GAAAAGAATGGAGATTAGT-ATGAGTATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
** * *
535833 TAAGGAAAATA-GGAT--AAAGAAAAG-ATTTCCATGC
127 T-ATCAAAA-ACGG-TGGAAAGAAAAGCATTT-CTTGT
* ** * * * * * * * * *
535867 AAAAGAAAATCATCAATATCATTTATCCTAATGATAGGA-ATATGCTTAT-AGTGTCTAATATT-
1 GAAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGAGATGTGTTTATGA-TGCCTAATCTTG
* * * ** * * * *
535929 AAAATGAATGAAGATCATTACT-AAAATCCATGTTTGTCTTATTTTAG-GCACAAACATAGACTT
65 AAAA-GAATGGAGATTAGTA-TGAGTATTCATGTTTGTCTTATTTAAGAG-ACAAACTTTGA-TT
* * *
535992 -TA-CAAAAATTGGTGGGAA-AAAAGCCTTTCTTGT
126 CTATCAAAAA-CGGTGGAAAGAAAAGCATTTCTTGT
* * * ** * * *
536025 GAAACTAAAGCA-CTAATATCTTGTATCCTAGCGAGAAGA-CTTTGTTTAT-ATTGCCTAATCCT
1 GAAACCAAAGCATC-AATGTCATGTATCCTAATGAGAAGAGATGTGTTTATGA-TGCCTAATCTT
* * * * * *
536087 -AAAAAAATGGGGATTAGTATGAGTATTCCTGTTTTTCTTATTTTAGAGATAAACTTTGATTCTA
64 GAAAAGAATGGAGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
* * **
536151 TCAAAAACGGTGGAAAGGAAAGCTTTTCTTCC
129 TCAAAAACGGTGGAAAGAAAAGCATTTCTTGT
* * * * * * * * * * *
536183 CACACCAAAGCATCATTGTCAAGTATTCTAA--AGAAGGGAATGTATTTTTGGTTCCCAATCTTG
1 GAAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGAG-ATGTGTTTATGATGCCTAATCTTG
* * * * * * *** *
536246 AAAAGAATGGAGATTATTACGAG-AATCGACGCTTGTCTTATTTAAGGGATGGACTTTGATTTTA
65 AAAAGAATGGAGATTAGTATGAGTATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT-
** * * *
536310 AGGAAAATA-GG-GCAAAGAAAAG-ATTTCCATGC
128 ATCAAAA-ACGGTGGAAAGAAAAGCATTT-CTTGT
* ** * * * * * *
536342 AAAAGAAAATCATCAATATCATTTATCCTAATGAGAAGA-TTGTGCTTAT-AGTGCCTAATCAT-
1 GAAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGAGATGTGTTTATGA-TGCCTAATCTTG
* * * * * * * * *
536404 AAAATGAATGAAGATCATTACT-AG-AGTCCATGCTTGTCTCATTT--GGGGCATGAACTTCGAC
65 AAAA-GAATGGAGATTAGTA-TGAGTA-TTCATGTTTGTCTTATTTAAGAGACA--AACTTTGA-
* * * * *
536465 AT-TA-CAAAAATTGGTGGGAA-AAATGCCTTTCTTGCT
124 TTCTATCAAAAA-CGGTGGAAAGAAAAGCATTTCTTG-T
* * * * *
536501 -AAACCAAAGCATCAATATCGTGTATCCTGATGAGAAGACCA--TGTTTATTG-TGCCTAATCCT
1 GAAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGA-GATGTGTTTA-TGATGCCTAATCTT
* * * *
536562 GAAAAGAATGGGGATTGGTATGAGTATTCATGTTTGTCTTTTTTAAGAGATAAACTTTGATTCTA
64 GAAAAGAATGGAGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
* * * **
536627 TCAAAAATGGTGGAAAAAAAAGCTTTTCCCGT
129 TCAAAAACGGTGGAAAGAAAAGCATTTCTTGT
* * * * * * * *
536659 GACACCAAAGCATCAATGTCA-GTATCCTAAT--CAAGGGAATGT-TTTTTAGGTTCC-CATCCT
1 GAAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGAG-ATGTGTTTAT-GATGCCTAATCTT
* * * * * * * *
536719 GAAAATAATGGAGACTATTATGAGAATTGATGCTTGTCTTATCTATG-GA-ATGAA-TTATGATT
64 GAAAAGAATGGAGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACA--AACTT-TGATT
* ** * * *
536781 TTAAGGAAAATA-AGT-CAAAGAAAAG-ATTTCCATG-
126 CT-ATCAAAA-ACGGTGGAAAGAAAAGCATTT-CTTGT
* ** * * * * *
536815 CAAAAAAAATCATCAATATGATTTATCCTAATGAG--GGGAT-TGTACTTAT-AGTGCCTAA--T
1 GAAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGAGATGTGT--TTATGA-TGCCTAATCT
* * * * * * * * * * * * * *
536874 AGCAAAATGGATGAAGATCATTCTTAGAATCCATATTTGTCTCATTTGAG-GTGCAAACTTAGAC
63 TG-AAAA-GAATGGAGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAG-ACAAACTTTGA-
** * ** * * *
536938 TT-TA-CAAAATTGGTGGGAA-AAATTCCTTTGTTGC
124 TTCTATCAAAAACGGTGGAAAGAAAAGCATTTCTTGT
* * * *** * * * *
536972 AAAACCAAAACATCAATATCACACATTCTAATGAG--GAGACTATGCTTATGGTGCCTAATCTTG
1 GAAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGAGA-TGTGTTTATGATGCCTAATCTTG
** ** * * *
537035 AAAAGAATAGG-GATTAACATGACAATTCATGTTTGTCTTATTTAAGACATAAACTTTGATTCCA
65 AAAAGAAT-GGAGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
* ** * *
537099 CCAAAAACTATGGAAAGAAAAGCTTTTTTTGT
129 TCAAAAACGGTGGAAAGAAAAGCATTTCTTGT
** * * * * * * *
537131 GACGCCAAAGCGTCAATGTCATTTGTCCTATTGA-AAG-GAATGTGTTT-TTAGTTCCCAATCTT
1 GAAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGAG-ATGTGTTTATGA-TGCCTAATCTT
* * * * * * *
537193 GAAAAGAATGGAGATT-GTTATGAG-AATCGATGATTGTCTAATTGAGGAGATAAACTTTGGCTT
64 GAAAAGAATGGAGATTAG-TATGAGTATTC-ATGTTTGTCTTATTTAAGAGACAAACTTT-GATT
** * *
537256 -TAAGGAAAATA-GG-GCAAAGAAAAG-ATTTC-CGT
126 CT-ATCAAAA-ACGGTGGAAAGAAAAGCATTTCTTGT
** * * * * * ** * *
537288 GCAAAAGAAAATCATCAATATGATTTATCCTAATGGGGGGA-ATGTGCTTAT-AGTACCTAAT-T
1 G--AAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGAGATGTGTTTATGA-TGCCTAATCT
** * * * * * * * * * *
537350 ACAAAGTGAATGAAGATCATTCCT-AGAATCCATGTTTGTCTCATTTGAG-GCACAAACTTAGAC
63 TGAAA-AGAATGGAGATTAGT-ATGAGTATTCATGTTTGTCTTATTTAAGAG-ACAAACTTTGA-
* ** *
537413 TT-TA-CAAAAATTGGTGG---GAAAA--ATGCCTTGC
124 TTCTATCAAAAA-CGGTGGAAAGAAAAGCATTTCTTGT
* * **** * ** *
537444 GAAACCAAAACATCAATATCGCACATCCTAATCAG--GAGACTACGTTTATGGTGCCTAATCTTG
1 GAAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGAGA-TGTGTTTATGATGCCTAATCTTG
* * ** * *
537507 AAAAGAATGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAAACAAACTTTGATTCTAC
65 AAAAGAATGGAGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * * *
537572 CAAAAACTGTGGAAAGAAATGCTTTTCTTGC
130 CAAAAACGGTGGAAAGAAAAGCATTTCTTGT
* * * * * * * * *
537603 G-ATCTTAAAGCATCAATGTTAGGTATCCTAA--AGAAGGGAATGTGTTTTTGGTTCCTAATCCT
1 GAAAC-CAAAGCATCAATGTCATGTATCCTAATGAGAAGAG-ATGTGTTTATGATGCCTAATCTT
* ***
537665 GAAAAGAATGGAGATT-GTTATGAG-ATTCGAT-TCTTGTCTTATTTAAGGGTTGAACTTTGATT
64 GAAAAGAATGGAGATTAG-TATGAGTATTC-ATGT-TTGTCTTATTTAAGAGACAAACTTTGATT
* ** * * * *
537727 TTAAGGAAAATA-GG-GTAGAGAAAAG-ATTTTCATGC
126 CT-ATCAAAA-ACGGTGGAAAGAAAAGCA-TTTCTTGT
* ** * * * * * * *
537762 AAAAGAAAATCATCAGTATCATTTATCCTTATGAGAAGA-ATGTGCTTAT-ATAGCCTAATCAT-
1 GAAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGAGATGTGTTTATGAT-GCCTAATCTTG
* * * * * * * * * * *
537824 AAAATGAATGAAGATCAATACT-AGAATCCATGTTTGTCTCATTT--GGGGCAAGAAGTTCGACA
65 AAAA-GAATGGAGATTAGTA-TGAGTATTCATGTTTGTCTTATTTAAGAGAC-A-AACTTTGA-T
* * *
537886 T-TA-CAAAAATTGGTAGG-AA-AAATGCCTTTCTTGCT
125 TCTATCAAAAA-CGGT-GGAAAGAAAAGCATTTCTTG-T
* * * * * **
537921 -AAGCCAAAGCATCAATATCGTGTATCCTAATGAGAAGACCA--TGTTTATGGTGCCTAATCTCA
1 GAAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGA-GATGTGTTTATGATGCCTAATCTTG
* * * *
537983 AAAAGAATGGGGATTAGAATGAGTATTCACGTTTGTCTTATTTAAGAGATTAAACTTTGATTCTA
65 AAAAGAATGGAGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGA-CAAACTTTGATTCTA
** * *
538048 TCAAAAATAGTGGAAAGAAAAGCTTTTCTTGC
129 TCAAAAACGGTGGAAAGAAAAGCATTTCTTGT
* * * * * *
538080 GACACCAAAGCATCAATGTCA-GTATCCTAAT--CAAGGGAATGTTTTTCAAG-TTCCT-ATGC-
1 GAAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGAG-ATGTGTTT-ATGATGCCTAAT-CT
* * * * * * *
538139 AGAAAATAATGGAGACT-GTTATGAG-AATCGATGCTTGTCTTATCTATG-GA-ATGAA-TTATG
63 TGAAAAGAATGGAGATTAG-TATGAGTATTC-ATGTTTGTCTTATTTAAGAGACA--AACTT-TG
* * * * *
538199 ATTTTAATGAAAATA-GG-GCAAAGAAAAG-ATTTTCATGC
123 ATTCT-ATCAAAA-ACGGTGGAAAGAAAAGCA-TTTCTTGT
* ** * * * * ** * **
538237 AAAAGAAAATCATCAATATGATTTATCCTAATGAGGGGA-ATGTGCTTAT-AGTGCCTAATC-AA
1 GAAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGAGATGTGTTTATGA-TGCCTAATCTTG
* * * * * * * * *
538299 AAAATGAATGAAGATCATTCCT-AGAATCCATGTTTGTCTCATTTGAG-GCACAAACTTAGACTT
65 AAAA-GAATGGAGATTAGT-ATGAGTATTCATGTTTGTCTTATTTAAGAG-ACAAACTTTGA-TT
** * * *
538362 -TA-CAAAATTTGCTAGG-AA-AAATGCCTTTCTTGT
126 CTATCAAAA-ACGGT-GGAAAGAAAAGCATTTCTTGT
* * * * * * * *
538395 GAAACCAAAGCGTCAATATCATGTATCCTAATCA-AA-AAACTATGTTTATGGTGCCTAATCCTA
1 GAAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGAGA-TGTGTTTATGATGCCTAATCTTG
* * * * *
538458 AAAAGAATGGGGATTAGTATGTGTATTCGTTTTTGTCTTATTTAATAGACAAACTTTGATTCTAT
65 AAAAGAATGGAGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
** * * **
538523 CAAAAGTGGTAGAAAGAAAAGCTTTTCTTAC
130 CAAAAACGGTGGAAAGAAAAGCATTTCTTGT
* * * * * *
538554 GACACCAAAGCGTCAATGTCATGTATCCTAAT--GAAGGGAATGTGTTT-TAGGTTCCCAA-CTA
1 GAAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGAG-ATGTGTTTAT-GATGCCTAATCT-
* * * * * * * * * * *
538615 TGAAAATACTAGAGACT-GCTACGAG-AATCGATGCTCGTCATATTTAAGGGATAAACTTTGA-T
63 TGAAAAGAATGGAGATTAG-TATGAGTATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGATT
*** **
538677 -TAT-AAGGAAATTATGGCAAAGAAAAG-ATTTCCTTCC
126 CTATCAA--AAACGGTGG-AAAGAAAAGCATTT-CTTGT
* ** * * * ** * **
538713 AAAAGAAAATCATTAATATCACCTATCCTAATGAAAAGA-ATGTGTTTAT-AGTGCCTAATC-CC
1 GAAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGAGATGTGTTTATGA-TGCCTAATCTTG
* * * * ** * * * * *
538775 AAAATGAATGAAGATCA-TTTCTAAAATCCATGTTTGTCTCATTTGAG-GCACGAACTTAGACTT
65 AAAA-GAATGGAGATTAGTAT-GAGTATTCATGTTTGTCTTATTTAAGAG-ACAAACTTTGA-TT
** ** * *
538838 -TA-CAAAAATTAGTGG-GGGAGAAGCCTTTCTTGT
126 CTATCAAAAA-CGGTGGAAAGAAAAGCATTTCTTGT
* * * * * * * **
538871 AAAAACGAAGCATCAATATCGTGTATCCTAATGAGAAGA-CTATGTTTAT-AGTGCCTAATCCCG
1 GAAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGAGATGTGTTTATGA-TGCCTAATCTTG
* * * *
538934 AAAAGAATAGG-GATTATTGTGAATGTTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
65 AAAAGAAT-GGAGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
* * *
538998 TCGAAAACAGTGGAAAGAAAAGCTTTTCTTG-
129 TCAAAAACGGTGGAAAGAAAAGCATTTCTTGT
* * * * * * *
539029 CAACACCAAAGCATCACTGGTCAAGTATCCTAAAGA-AAG-GATTGTGTTT-T-AGGTTCTCATT
1 GAA-ACCAAAGCATCAAT-GTCATGTATCCTAATGAGAAGAGA-TGTGTTTATGATG-CCT-AAT
* * * * * * * * * ** *
539090 CCTAAAAATATTGGAGACT-GTAACGAG-AATCGATGCTTGTCTTATTTAGGAGATGAACTATGA
61 CTTGAAAAGAATGGAGATTAGT-ATGAGTATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGA
* *** * *
539153 TTTTAAGGAAAACAGG-GTAAAGAAAAG-ATTTCCATG-
124 TTCTATCAAAAAC-GGTGGAAAGAAAAGCATTT-CTTGT
** * * * * * * ** *
539189 GAAAAGAAAATCATCAATATCATTTATGCTAATGAGGAGA-ATGTGCTTA-GAGTGAGTAATC-A
1 G-AAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGAGATGTGTTTATGA-TGCCTAATCTT
* * * * * * * * *
539251 CAAAATGAATGAAAATCATTACT-AGAATCCATGTTTGTCTTATTT--GAGGCATGAACTTAGAC
64 GAAAA-GAATGGAGATTAGTA-TGAGTATTCATGTTTGTCTTATTTAAGAGACA--AACTTTGA-
* * * * * **
539313 TT-TA-CAAAAATAGGTGGGAA-AAATGCCTTTCCTAC
124 TTCTATCAAAAA-CGGTGGAAAGAAAAGCATTTCTTGT
* ** * * *
539348 GAAACCAAAGCA-CTAATATTGTGTATCTTAATGAGAAGA-CTATGTTTAT-AGTGCCTAATTCT
1 GAAACCAAAGCATC-AATGTCATGTATCCTAATGAGAAGAGATGTGTTTATGA-TGCCTAA-TCT
* * * * * * * *
539410 T-AAAAAAAGGGGGATTAATATGAGTATTCATCTTTGTCTTATGTAAGAGATAAACTTTGATTCA
63 TGAAAAGAATGGAGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
* * * * *
539474 ATTAAAAATGATGGAAAGAAAAGCTTTTCTTGC
128 ATCAAAAACGGTGGAAAGAAAAGCATTTCTTGT
* * * * * *
539507 GACACCAAAGCATCAATGTCAAGTATCCTAAAGA-AAG-GATTGTGTTT-TAGGTTCCCAATCTT
1 GAAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGAGA-TGTGTTTAT-GATGCCTAATCTT
* ** * * ** *
539569 G-AAAGTATTGGAGATT-GTAACAAG-AATCGATGCTTGTCTTATTTAAGAGATGAACTATGATT
64 GAAAAG-AATGGAGATTAGT-ATGAGTATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGATT
* *** ** * * * *
539631 TTAAGGAAAATAGAGCAAAGAAAAG-ATTTTCATGC
126 CTATCAAAAACGGTGGAAAGAAAAGCA-TTTCTTGT
* ** * * * * * * * * **
539666 AAAAGAAAATCATTAATATGATTTATCCTAAGGAGGAGA-ATGTGCTTAT-AGTGCCTAATC-AC
1 GAAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGAGATGTGTTTATGA-TGCCTAATCTTG
* * * * * * * * * * * * *
539728 AAAATGAATGAAGATCATTACT-AGAATCCATGTTTGTGTCATTTGACACACGAACTTAGATTTT
65 AAAA-GAATGGAGATTAGTA-TGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
** * * *
539792 A-CAATAATTGGTGGGAA-AAAAGCTTTTCTTGC
128 ATCAA-AAACGGTGGAAAGAAAAGCATTTCTTGT
* * * * *
539824 GAAACCAAAGCA-CTAATATCGTGTATCCTAATGAGAAGA-CTATGTTTAT-AGTGCCTAATCCT
1 GAAACCAAAGCATC-AATGTCATGTATCCTAATGAGAAGAGATGTGTTTATGA-TGCCTAATCTT
* *
539886 -AAAAGAAATGGGGATTAGTATGAG---TCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
64 GAAAAG-AATGGAGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
* *
539947 ATCAAAAACGGTGGAAATAAAAGCTTTTCTTGT
128 ATCAAAAACGGTGGAAAGAAAAGCATTTCTTGT
* * * * * * * *
539980 GACACCAAGGCACCAATGTCTTGTATCCTAAT--GAAGGGAATGTGTTTTAGGA-GCCCAATCCT
1 GAAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGAG-ATGTG-TTTATGATGCCTAATCTT
* * * * * ** * ** * * * *** * *
540042 GAAAATATTGTAGACTATTACAAG-AATCAATACTTGTTTTGTTTAAGGGTTGAATTTTGATTTT
64 GAAAAGAATGGAGATTAGTATGAGTATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
*** ** * * *
540106 AAGGAAAA-TATGACAAAGAAAAG-ATTTTCATGCA
128 ATCAAAAACGGTG-GAAAGAAAAGCA-TTTCTTG-T
* * * * * *
540140 GAAGA--AAATCATCAATATTATTTATCCTAATGAGGAGA-ATGTGCTTTA-G-TGCCTAATC-A
1 GAA-ACCAAAGCATCAATGTCATGTATCCTAATGAGAAGAGATGTG-TTTATGATGCCTAATCTT
* * ** * * * * * * * * *
540199 CAAAATGAATGAAGACCATTACT-AGAATCCATGGTTGTCTCATTTGAG-GCACGAACTTAGGCT
64 GAAAA-GAATGGAGATTAGTA-TGAGTATTCATGTTTGTCTTATTTAAGAG-ACAAACTT-TGAT
** * * *
540262 T-TA-CAGAAATTGGT-GAGAA-AAATGCCTTTCTTGC
125 TCTATCA-AAAACGGTGGA-AAGAAAAGCATTTCTTGT
* * * * * ** * * * * *
540296 AAAACGAAAACATCAATATCATGTATCCTATTGAGAAGA-CCGTGTTAATGGTGCATAATCCTAA
1 GAAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGAGATGTGTTTATGATGCCTAATCTTGA
* ** * *
540360 AAAGAATGGGGATTAGTATGACAATTCATGTTTATCTTATTTAAGAGACAAACTTTGATTCCATC
66 AAAGAATGGAGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
* * * *
540425 AAAAACTGTGGAAAGAAAAGCTTTTTTTAT
131 AAAAACGGTGGAAAGAAAAGCATTTCTTGT
* * * * * * * * *
540455 GACACTAAAGCATCAATGTCATGCATCCTAATGA-ACGAAATGTGTTT-TAGGTTCCCAATCCTG
1 GAAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGAGATGTGTTTAT-GATGCCTAATCTTG
* * * * ** * * * *
540518 AAAATAATAGAAACT-GCTACAAG-AATC-TGTGCTTGTCTTATTTAAGGGATAAACTTTGATTA
65 AAAAGAATGGAGATTAG-TATGAGTATTCATGT--TTGTCTTATTTAAGAGACAAACTTTGATTC
** * *** *
540580 TAAGGAAAATAGGGCAAAAAAAAAAG-ATTTTCTTG-
127 T-ATCAAAA-ACGGTGGAAAGAAAAGCA-TTTCTTGT
* ** * * * * * * * *
540615 CAAAAAAAATCATTAATATCATTTATCCTAATGAAAATA-ATGTGTTTGT-AGTGCCTAATC-TC
1 GAAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGAGATGTGTTTATGA-TGCCTAATCTTG
* * * * * * *
540677 AAAATGAATGAAGATCA-TTTCTAGAATCCATGTTTGTCTTATTTAAG-GCACAAACTTAGACTT
65 AAAA-GAATGGAGATTAGTAT-GAGTATTCATGTTTGTCTTATTTAAGAG-ACAAACTTTGA-TT
** ** *
540740 -TA-CAAAAATTAGTGGGGA-AAAAGCCTTTCTTG-
126 CTATCAAAAA-CGGTGGAAAGAAAAGCATTTCTTGT
* * * * * * * *
540772 CAAGACCGAAGCATCAATATCGTGTATCCTAATAAGAAGA-CTATGTTTATGGTGCCTAATCTTG
1 GAA-ACCAAAGCATCAATGTCATGTATCCTAATGAGAAGAGATGTGTTTATGATGCCTAATCTTG
* * * *
540836 AAAAGAATGGGGATTAGTATGAGTATTCATGTTT-ACTTTTTTGAGAGACAAACTTTGATTCTAT
65 AAAAGAATGGAGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
540900 CAA
130 CAA
540903 TGTTTGTCTT
Statistics
Matches: 7288, Mismatches: 2309, Indels: 1626
0.65 0.21 0.14
Matches are distributed among these distances:
143 1 0.00
144 34 0.00
145 23 0.00
146 37 0.01
147 6 0.00
150 2 0.00
151 2 0.00
152 7 0.00
153 15 0.00
154 179 0.02
155 84 0.01
156 253 0.03
157 772 0.11
158 2324 0.32
159 2730 0.37
160 475 0.07
161 247 0.03
162 89 0.01
163 7 0.00
164 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (160 bp):
GAAACCAAAGCATCAATGTCATGTATCCTAATGAGAAGAGATGTGTTTATGATGCCTAATCTTGA
AAAGAATGGAGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
AAAAACGGTGGAAAGAAAAGCATTTCTTGT
Found at i:544141 original size:159 final size:158
Alignment explanation
Indices: 541715--545480 Score: 609
Period size: 159 Copynumber: 23.8 Consensus size: 158
541705 GTTTTTTCTT
* * * * *
541715 CCCAATCTTGAAAAGAGTGGAGATTGTTACGAGAATCGATG-TTGTCTTATTTAAGGGATAAATT
1 CCCAATCTTGAAAAGAATGAAGATTGTTACGAGAATC-ATGCTTGTCTTATTTAAGAGACAAACT
** *** * * * * * *
541779 TTGATTTTAAGGAAAA-TAGGGCAAAGAAAAGATTTTCGTGCAAAA-AAAATCATCAATATCACT
65 TTGATTCCATCAAAAACTATGG-AAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATT
* * * * **
541842 TATCATAATGAGGATAATGTGCTTATAATG
129 TATCCTAATGAAGAGAATGTGTTTATGGTG
* *** * * * * * * *
541872 CCTAATCACAAAAAGAATAAAGATCGTTACTAGAATCCACGTTTGTCTCATTTAAG-GCACGAAC
1 CCCAATCTTGAAAAGAATGAAGATTGTTACGAGAAT-CATGCTTGTCTTATTTAAGAG-ACAAAC
* * * * * ** *
541936 ATAGACTT-TAT-AAAAATTGGTGGGGA-AAAAGCCTTTCTTG-AGAAACCAAAGCATCAATATC
64 TTTGA-TTCCATCAAAAACT-ATGGAAAGAAAAGCTTTTCTTGCA-AAACCAAAGCATCAATATC
* * * * *
541997 GTGTATGCTAAT-AAGAGGACTATGTTTATGGTG
126 ATTTATCCTAATGAAGA-GAATGTGTTTATGGTG
* * * * * * * * * *
542030 CCTAATCCTGAAAAGAAT-AGGGATTAG-CACAATATTCTTGTTTGTCTTATTTAGGAGACAAAC
1 CCCAATCTTGAAAAGAATGA-AGATT-GTTACGAGAATCATGCTTGTCTTATTTAAGAGACAAAC
* * ** * *
542093 TTTGATTCTATCGAAAACGGTGGAAAGAAAAGCTTTTTCTGTG---ACCCAAAAGCATCAATGTC
64 TTTGATTCCATCAAAAACTATGGAAAGAAAAGC-TTTTCT-TGCAAAACC-AAAGCATCAATATC
** * * *
542155 ATGAATCCAAATGAAGGGAATGTGTTTTTGGCT-
126 ATTTATCCTAATGAAGAGAATGTGTTTATGG-TG
* * * * * * *
542188 CCTAATCTTG-AAAGAATGGAGATTGCTATGAGAATCGATACTTGTCTTATTTAAGGGATAAACT
1 CCCAATCTTGAAAAGAATGAAGATTGTTACGAGAATC-ATGCTTGTCTTATTTAAGAGACAAACT
** *** * * * * * * ** *
542252 TTGATTTTAAGGAAAA-TAGGGCAAACAAAAGATTTCCATGCAATAGAAAATCATCAATATCATT
65 TTGATTCCATCAAAAACTATGG-AAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATT
* * * * * *
542316 TATCCAAATTAGGATAACGTGTTTATAGTG
129 TATCCTAATGAAGAGAATGTGTTTATGGTG
* ** * * ** * * **
542346 CCTAATC-ACAAAGTGAAGGAAGATCATTACTAGAATCCATGTTTGTCTCT-TTTAAG-GCACGG
1 CCCAATCTTGAAA-AGAATGAAGATTGTTACGAGAAT-CATGCTTGTCT-TATTTAAGAG-ACAA
* * * * * *
542408 ACTTTGAATT-TA-CAAAAATTGGTGGAAA-AAAAGCCTTTCTTGCAAAACTAAAGCACCAATAT
62 ACTTTG-ATTCCATCAAAAACT-ATGGAAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATAT
* * *
542470 C-TTGTATCCTAATG-AGAAGACTATGTTTATTGTG
125 CATT-TATCCTAATGAAG-AGAATGTGTTTATGGTG
* ** * * * * *
542504 CCTAATCTTGAAAAGAATGGGGATTAG-TATGAGTATTCTTGTTTGTCTTATTTAAGACACAAAC
1 CCCAATCTTGAAAAGAATGAAGATT-GTTACGAG-AATCATGCTTGTCTTATTTAAGAGACAAAC
* * ** * * * * * * * **
542568 TTTGATTCTATCAGAAACGGTGGAACGAAAAGCTTTTCTTGCGACACCAAATCATTAATGTGAAG
64 TTTGATTCCATCAAAAACTATGGAAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATT
* *
542633 TATCCTAAAGAA-AGGAATGTGTTT-TAGGTT
129 TATCCTAATGAAGA-GAATGTGTTTAT-GGTG
* * * **
542663 CCCAATCCTGAAAATAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAA-AGGATGAAC
1 CCCAATCTTGAAAAGAATGAAGATTGTTACGAGAATC-ATGCTTGTCTTATTTAAGA-GACAAAC
* ** * * * ** * ** ** *
542727 TATGATTTTAAGCAAAAA-TAGGGCAAAGAAAAGATTACCATGCAGTAGAAAATCATCAATATCA
64 TTTGA-TTCCATCAAAAACTATGG-AAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCA
* * *
542791 TTTATCCTAAAG-AGAATAATGTGTTTATAGTG
127 TTTATCCTAATGAAG-AGAATGTGTTTATGGTG
* ** * ** * * * * *
542823 CCTAAT-TACAAAAATGAAAGAAGATCATCACTAGAATCAATGTTTGTCTCATTT--GAGGCATG
1 CCCAATCT-TGAAAA-GAATGAAGATTGTTACGAGAATC-ATGCTTGTCTTATTTAAGAGACA--
* * * * * * *
542885 AACTTAGACTTCGCAAT-AAATAGTA-GG--A-AAAAGCCTTTCTTGCAAAAGCAAAGCTTTAAT
61 AACTTTGA-TTC-C-ATCAAAAACTATGGAAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAAT
* * * * * *
542945 ATCGTGTATCCTGATG-AGAAGACTATGTTTATGATG
123 ATCATTTATCCTAATGAAG-AGAATGTGTTTATGGTG
* * * * * * * * * * *
542981 CCTAATCTTGAAAAAAATAGGGAATAGTGTGA-GTG-TTCACGTTTGCCATATTTAAGAGACAAA
1 CCCAATCTTGAAAAGAAT---GAAGATTGTTACGAGAATCATGCTTGTCTTATTTAAGAGACAAA
** * ** * * *
543044 CTTTGATTTTATCAAAAACTATGGGAAGAAAAAGCTTTTCTTGCAACTCTAAAGCATTAATGTCA
63 CTTTGATTCCATCAAAAACTATGGAAAG-AAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCA
** * * * * * *
543109 GGTATCTTATTGAAGGGAAT-TGGTTTTTGATT
127 TTTATCCTAATGAAGAGAATGT-GTTTATGGTG
* * * * * * * * * * * *** *
543141 CTCGATCCTGAAAATAATGGAGACTATTACAAGAATCGATACTTGTTTTATTTAAGGGTTGAATT
1 CCCAATCTTGAAAAGAATGAAGATTGTTACGAGAATC-ATGCTTGTCTTATTTAAGAGACAAACT
* * ** * * * ** * *
543206 TTGATT---TTAAGGAAACTAGGGTAAAGAAAATATTTCCATGCGAAAGAAAAACATCAATATGA
65 TTGATTCCATCAA--AAACTATGG-AAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCA
* * * * *
543268 TTTATCTTAATGAGGAGAATGTGCTTATAGTT
127 TTTATCCTAATGAAGAGAATGTGTTTATGGTG
** ** ** ** * *
543300 CTTAATC-ACAAAATGAATGAAGATCATTACTTGAATCCATG-TATGTCTCATTTGAG-GCACAA
1 CCCAATCTTGAAAA-GAATGAAGATTGTTACGAGAAT-CATGCT-TGTCTTATTTAAGAG-ACAA
* * * * * * * *
543362 ACTTAGACTT-CA-CAAAAATTGGTGGGAA-AAATGCCTTTCTTGCGAAACCAAAACATCAATAT
62 ACTTTGA-TTCCATCAAAAACT-ATGGAAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATAT
* **
543424 CGA-GTATCCTAATTAGAAGACTATG-G-TTATGGTG
125 C-ATTTATCCTAA-T-GAAGAGAATGTGTTTATGGTG
* * ** * * * * * * *
543458 CCTAATCCTGAAAAGAATGGGGATTAG-TATGACAATTCATGTTTATTTTATTTAAGAAATAAAC
1 CCCAATCTTGAAAAGAATGAAGATT-GTTACGAGAA-TCATGCTTGTCTTATTTAAGAGACAAAC
* ** * * * *
543522 TTTGATTCCATAAAAAACTATGGAAAGAAAAGCTTTTCTTGTGACACCAAGGCATCAATGTCATC
64 TTTGATTCCATCAAAAACTATGGAAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATT
* * * * * *
543587 TATCCTATTTAAGGGGATGTGTTTTTGGTT
129 TATCCTAATGAAGAGAATGTGTTTATGGTG
* * * **
543617 CCTC-ATCTTGAAAAGAATGGAGATTGTTACGAGAATCATGCTTGTCTTATTTACGGGATGAACT
1 CC-CAATCTTGAAAAGAATGAAGATTGTTACGAGAATCATGCTTGTCTTATTTAAGAGACAAACT
** **** * * * ** * * *
543681 TTGATTTTAAGGGAAA-TAAGGCAAAGAAAAG-ATTTCTAAGCAAAAGAAAATCATCACTATCAC
65 TTGATTCCATCAAAAACTATGG-AAAGAAAAGCTTTTCT-TGCAAAACCAAAGCATCAATATCAT
* * *
543744 TTATCCTAATGAAAAGATTGTGTTTATAGTG
128 TTATCCTAATGAAGAGAATGTGTTTATGGTG
* ** * ** * * ** *
543775 CCTAATC-ACAAAATGAATGAGGATCATTACTAGAATACGTATTTGTCTCATTTAAG-GAACAAA
1 CCCAATCTTGAAAA-GAATGAAGATTGTTACGAGAAT-CATGCTTGTCTTATTTAAGAG-ACAAA
* * *** * * * * *
543838 CTTAGACTT-TA-CAAAAA-T-TGGTGGGAAAATTACCTTTCTTTCAAAAGCAAAACATCAATAT
63 CTTTGA-TTCCATCAAAAACTATGGAAAGAAAA--GCTTTTCTTGCAAAACCAAAGCATCAATAT
* * * *
543899 CGTGTATCCAAATG-AGAAGAATATGTTTATGGTG
125 CATTTATCCTAATGAAG-AGAATGTGTTTATGGTG
* * * * * * *
543933 CCTAATCTTGAAAAGAATGGAGATTAG-TATGATAATTCATGTTTTTCTTATTTATGAGACAAAC
1 CCCAATCTTGAAAAGAATGAAGATT-GTTACGAGAA-TCATGCTTGTCTTATTTAAGAGACAAAC
* ** *
543997 TTTGATTCCATCAAAAACTGTGGAAAGAAAAGCTTTTCTTGCAACCCCAAAGCATCATTATCATT
64 TTTGATTCCATCAAAAACTATGGAAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATT
* * *
544062 TATCCTATTGAAGAGAATGTGTTTTTGGTT
129 TATCCTAATGAAGAGAATGTGTTTATGGTG
* **
544092 CCCAATCTTGAAAGGAATGAAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGAGATGAACT
1 CCCAATCTTGAAAAGAATGAAGATTGTTACGAGAATC-ATGCTTGTCTTATTTAAGAGACAAACT
** *** * * ** ** * * *
544157 TTGATTTTAAGGAAAA-TA-GAGCTAAA-AAAAGATTTCCAGGCAAAAAAAAATCATCAGTATCG
65 TTGATTCCATCAAAAACTATG-G--AAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCA
* * * * * *
544219 CTTATCCTAATGAAAAGATTGTGTTTGTAGTA
127 TTTATCCTAATGAAGAGAATGTGTTTATGGTG
* ** * * ** * * * * * ** *
544251 CCTAATC-ACAAAATAAATGAGGATCATTACTAGAATACATGTTTATCTCATTTGAGCCACGAAC
1 CCCAATCTTGAAAA-GAATGAAGATTGTTACGAGAAT-CATGCTTGTCTTATTTAAGAGACAAAC
* * * * * * * ** **
544315 TTAGACTT-TA-CCAAAATTGGTGGGAA-AAATGCATTTT-TTGTGAAACCAAAATATCAATATC
64 TTTGA-TTCCATCAAAAACT-ATGGAAAGAAAAGC-TTTTCTTGCAAAACCAAAGCATCAATATC
* * ***
544376 GTGTATCCTAATG-AGAAGACCATGTTTATGGTG
126 ATTTATCCTAATGAAG-AGAATGTGTTTATGGTG
** * * * * * * * *
544409 CCTTATCCTAAAAAG-ATTAGCGATTAG-TATGACTATTCATGTTTGTCTTATTTAAGAGACAAA
1 CCCAATCTTGAAAAGAATGA-AGATT-GTTACGA-GAATCATGCTTGTCTTATTTAAGAGACAAA
* * ** * * * * ** * *
544472 CTTTAATTCTATCAAAAACGGTGTAAAGAAAAGCTTTTCTTACAACACCAAAGTATTGATGTCAA
63 CTTTGATTCCATCAAAAACTATGGAAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCAT
* * *
544537 GTATCCTAAAGAA-AGGAATGTGTTT-TAGGTT
128 TTATCCTAATGAAGA-GAATGTGTTTAT-GGTG
* * * * * **
544568 CCTAATCTTGAAAA-TATTAGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAAC
1 CCCAATCTTGAAAAGAATGA-AGATTGTTACGAGAATC-ATGCTTGTCTTATTTAAGAGACAAAC
* * ** * * * * * * * * **
544632 TATCATTTTA-CTGAAAA-TAGGGCAAATAAAAGATTTCCATGTAAAA-GAAAGTCATCAATAAG
64 TTTGATTCCATC-AAAAACTATGG-AAAGAAAAGCTTTTCTTGCAAAACCAAAG-CATCAATATC
* * *
544694 ATTTATCCTAA-CAAGGAGAATGTGCTTATAGTG
126 ATTTATCCTAATGAA-GAGAATGTGTTTATGGTG
* ** * * * * * * *
544727 CCTAATC-ACAGAATGAATAAAGATCGTTACTAGAATCCATGTTTGTCTCATTTGAG-GCACAAA
1 CCCAATCTTGA-AAAGAATGAAGATTGTTACGAGAAT-CATGCTTGTCTTATTTAAGAG-ACAAA
* * * * ** ** **
544790 CTTAGACTT-TA-CAAAAATTGGTGGGAAA-AATGGC-TTTCTTGTGAAACCAAAATATCAATAT
63 CTTTGA-TTCCATCAAAAACT-AT-GGAAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATAT
* * ***
544851 CGTGTATCCTAATG-AGAAGACCATGTTTATGGTG
125 CATTTATCCTAATGAAG-AGAATGTGTTTATGGTG
* * ** * * * * *
544885 CCTAATCCTGAAAAGAATGGGGATT-TGTATGACAATTTATGCTTGTCTTCTTTAAAAGGA-AAA
1 CCCAATCTTGAAAAGAATGAAGATTGT-TACGAGAA-TCATGCTTGTCTTATTTAAGA-GACAAA
* * * ** * * * *
544948 ATTTGATTCCATCAAAAACGATGGAAAGAAAAGCTTTTGTCACGACACCAAGGCATCAATGTCAT
63 CTTTGATTCCATCAAAAACTATGGAAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCAT
* * * * *
545013 GTATCCTATTAAAGGGAATGTGTTTCA-GGTT
128 TTATCCTAATGAAGAGAATGTGTTT-ATGGTG
* * * * * * * * * *** *
545044 CTCAATCCTGAAAATAATGGAGACTATTACAAGAATCGATAG-TTGTTTTATTTAAGGGTTGAAT
1 CCCAATCTTGAAAAGAATGAAGATTGTTACGAGAATC-AT-GCTTGTCTTATTTAAGAGACAAAC
* * * * * * * * * ** * *
545108 TTTGATT--TTGAGGAAAGTAGGGCAAAGAAATGATTTCCATGCAAAAGAAAATCGTCAATATCA
64 TTTGATTCCATCA-AAAACTATGG-AAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCA
* * * *
545171 TTTATCCTAATGAGGATAATGTGCTTATAGTG
127 TTTATCCTAATGAAGAGAATGTGTTTATGGTG
* ** * * * * * *
545203 CCTAATC-ACAAAATGAATGAAAATTATTACTAGAATCCATGTTTATCTTATTTGAG-GCACAAA
1 CCCAATCTTGAAAA-GAATGAAGATTGTTACGAGAAT-CATGCTTGTCTTATTTAAGAG-ACAAA
* * * * * * * * *
545266 CTTAGACTT-TA-CAAAAATTGTTGAGAA-AAATGCCTTTCTTGCGAAACCAAAACA-CAAATAT
63 CTTTGA-TTCCATCAAAAACTATGGA-AAGAAAAGCTTTTCTTGCAAAACCAAAGCATC-AATAT
*** * * *
545327 CGCAT-TCCTAATG-AGAGGACTATGTTTACGGTG
125 CATTTATCCTAATGAAGA-GAATGTGTTTATGGTG
* ** * * * * * *
545360 CCTAATCTTGAAAAGAATGGGGAGTAG-TATGACTATTCATGTTTGTCTTATTTAAGAGACAAAA
1 CCCAATCTTGAAAAGAATGAAGA-TTGTTACGA-GAATCATGCTTGTCTTATTTAAGAGACAAAC
* * * ** *
545424 TTTGATTCTATCAAAAACGATGGAAACAAAAGCTTTTCTTGCAGCACCAAGGCATCA
64 TTTGATTCCATCAAAAACTATGGAAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCA
545481 GTTTCATGTA
Statistics
Matches: 2509, Mismatches: 890, Indels: 419
0.66 0.23 0.11
Matches are distributed among these distances:
154 2 0.00
155 6 0.00
156 19 0.01
157 254 0.10
158 955 0.38
159 996 0.40
160 214 0.09
161 54 0.02
162 6 0.00
163 3 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (158 bp):
CCCAATCTTGAAAAGAATGAAGATTGTTACGAGAATCATGCTTGTCTTATTTAAGAGACAAACTT
TGATTCCATCAAAAACTATGGAAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATTTA
TCCTAATGAAGAGAATGTGTTTATGGTG
Found at i:544375 original size:476 final size:476
Alignment explanation
Indices: 541699--546197 Score: 5006
Period size: 476 Copynumber: 9.5 Consensus size: 476
541689 TTATTTAGGG
** * *
541699 GAATGTGTTTTTTCTTCCCAATCTTGAAAAGAGTGGAGATTGTTACGAGAATCGATG-TTGTCTT
1 GAATGTGTTTTTGGTTCCCAATCTTGAAAATAATGGAGATTGTTACGAGAATCGATGCTTGTCTT
* * * *
541763 ATTTAAGGGATAAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCGTGCAAAA-AAA
66 ATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
* * * * * * *
541827 ATCATCAATATCACTTATCATAATGAGGATAATGTGCTTATAATGCCTAATCACAAAAAGAATAA
131 ATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
* * * * *
541892 AGATCGTTACTAGAATCCACGTTTGTCTCATTTAAGGCACGAACATAGACTTTATAAAAATTGGT
196 AGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT
* * * * *
541957 GGGGAAAAA-GCCTTTCTTGAGAAACCAAAGCATCAATATCGTGTATGCTAATAAGAGGACTATG
261 -GGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATG
* * * * * * *
542021 TTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGCA-CAATATTCTTGTTTGTCTTATTTAGG
325 TTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAG
* *
542085 AGACAAACTTTGATTCTATCGAAAACGGTGGAAAGAAAAGCTTTTTCTGTG--AC-CCAAAAGCA
390 AGACAAACTTTGATTCTATCAAAAACTGTGGAAAGAAAAGC-TTTTCT-TGCAACACC-AAAGCA
* * * *
542147 TCAATGTCATGAATCCAAATGAAGG
452 TCAATGTCATGTATCCTATTGAAGA
* * * * * *
542172 GAATGTGTTTTTGGCTCCTAATCTTG-AAAGAATGGAGATTGCTATGAGAATCGATACTTGTCTT
1 GAATGTGTTTTTGGTTCCCAATCTTGAAAATAATGGAGATTGTTACGAGAATCGATGCTTGTCTT
* * *
542236 ATTTAAGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAACAAAAGATTTCCATGCAATAGAAA
66 ATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
* * * * * *
542301 ATCATCAATATCATTTATCCAAATTAGGATAACGTGTTTATAGTGCCTAATCACAAAGTGAAGGA
131 ATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
* * * * *
542366 AGATCATTACTAGAATCCATGTTTGTCTCTTTTAAGGCACGGACTTTGAATTTACAAAAATTGGT
196 AGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT
* * * * * * *
542431 GGAAAAAAAGCCTTTCTTGCAAAACTAAAGCACCAATATCTTGTATCCTAATGAGAAGACTATGT
261 GGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATGT
* *
542496 TTATTGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGA
326 TTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGA
* * * * * * *
542561 CACAAACTTTGATTCTATCAGAAACGGTGGAACGAAAAGCTTTTCTTGCGACACCAAATCATTAA
391 GACAAACTTTGATTCTATCAAAAACTGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAA
* * **
542626 TGTGAAGTATCCTAAAGAA-A
456 TGTCATGTATCCTATTGAAGA
* *
542646 GGAATGTGTTTTAGGTTCCCAATCCTGAAAATAATGGAGATTGTTACGAGAATCGATGCTTGTCT
1 -GAATGTGTTTTTGGTTCCCAATCTTGAAAATAATGGAGATTGTTACGAGAATCGATGCTTGTCT
* * * * **
542711 TATTTAAAGGATGAACTATGATTTTAAGCAAAAATAGGGCAAAGAAAAGATTACCATGCAGTAGA
65 TATTTAAGGGATGAACTTTGATTTTAAG-GAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGA
* * * *
542776 AAATCATCAATATCATTTATCCTAAAGAGAATAATGTGTTTATAGTGCCTAATTACAAAAATGAA
129 AAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC-AAAATGAA
* * * * **
542841 AGAAGATCATCACTAGAATCAATGTTTGTCTCATTTGAGGCATGAACTTAGACTTCGCAATAAA-
193 TGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAA-AAAT
* * * * * * * *
542905 TAGTAGGAAAAA-GCCTTTCTTGCAAAAGCAAAGCTTTAATATCGTGTATCCTGATGAGAAGACT
257 TGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACT
* * * * * * * * *
542969 ATGTTTATGATGCCTAATCTTGAAAAAAATAGGGAATAGTGTGAGTGTTCACGTTTGCCATATTT
322 ATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTT
* * * * *
543034 AAGAGACAAACTTTGATTTTATCAAAAACTATGGGAAGAAAAAGCTTTTCTTGCAACTCTAAAGC
387 AAGAGACAAACTTTGATTCTATCAAAAACTGTGGAAAG-AAAAGCTTTTCTTGCAACACCAAAGC
* * * *
543099 ATTAATGTCAGGTATCTTATTGAAGG
451 ATCAATGTCATGTATCCTATTGAAGA
* * * * * * * * *
543125 GAAT-TGGTTTTTGATTCTCGATCCTGAAAATAATGGAGACTATTACAAGAATCGATACTTGTTT
1 GAATGT-GTTTTTGGTTCCCAATCTTGAAAATAATGGAGATTGTTACGAGAATCGATGCTTGTCT
* * * * * *
543189 TATTTAAGGGTTGAATTTTGATTTTAAGGAAACTAGGGTAAAGAAAATATTTCCATGCGAAAGAA
65 TATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAA
* * * * * *
543254 AAACATCAATATGATTTATCTTAATGAGGAGAATGTGCTTATAGTTCTTAATCACAAAATGAATG
130 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
* * * *
543319 AAGATCATTACTTGAATCCATGTATGTCTCATTTGAGGCACAAACTTAGACTTCACAAAAATTGG
195 AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG
* *
543384 TGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGAGTATCCTAATTAGAAGACTATG
260 TGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATG
* * ** * *
543449 GTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACAATTCATGTTTATTTTATTTAAG
325 TTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAG
* * * * * ** *
543514 AAATAAACTTTGATTCCATAAAAAACTATGGAAAGAAAAGCTTTTCTTGTGACACCAAGGCATCA
390 AGACAAACTTTGATTCTATCAAAAACTGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCA
* * *
543579 ATGTCATCTATCCTATTTAAGG
455 ATGTCATGTATCCTATTGAAGA
* *
543601 GGATGTGTTTTTGGTTCCTC-ATCTTGAAAAGAATGGAGATTGTTACGAGAATC-ATGCTTGTCT
1 GAATGTGTTTTTGGTTCC-CAATCTTGAAAATAATGGAGATTGTTACGAGAATCGATGCTTGTCT
* * * * *
543664 TATTTACGGGATGAACTTTGATTTTAAGGGAAATAAGGCAAAGAAAAGATTTCTAAGCAAAAGAA
65 TATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAA
* * ** *
543729 AATCATCACTATCACTTATCCTAATGAAAAGATTGTGTTTATAGTGCCTAATCACAAAATGAATG
130 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
* * * * * * *
543794 AGGATCATTACTAGAATACGTATTTGTCTCATTTAAGGAACAAACTTAGACTTTACAAAAATTGG
195 AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG
* * * * * * *
543859 TGGGAAAATTACCTTTCTTTCAAAAGCAAAACATCAATATCGTGTATCCAAATGAGAAGAATATG
260 TGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATG
* * *
543924 TTTATGGTGCCTAATCTTGAAAAGAATGGAGATTAGTATGA-TAATTCATGTTTTTCTTATTTAT
325 TTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGT-ATTCATGTTTGTCTTATTTAA
* *
543988 GAGACAAACTTTGATTCCATCAAAAACTGTGGAAAGAAAAGCTTTTCTTGCAACCCCAAAGCATC
389 GAGACAAACTTTGATTCTATCAAAAACTGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATC
* * *
544053 ATTATCATTTATCCTATTGAAGA
454 AATGTCATGTATCCTATTGAAGA
** *
544076 GAATGTGTTTTTGGTTCCCAATCTTGAAAGGAATGAAGATTGTTACGAGAATCGATGCTTGTCTT
1 GAATGTGTTTTTGGTTCCCAATCTTGAAAATAATGGAGATTGTTACGAGAATCGATGCTTGTCTT
* * * *
544141 ATTTAAGAGATGAACTTTGATTTTAAGGAAAATAGAGCTAAA-AAAAGATTTCCAGGCAAAAAAA
66 ATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGC-AAAGAAAAGATTTCCATGCAAAAGAA
* ** ** * * * *
544205 AATCATCAGTATCGCTTATCCTAATGAAAAGATTGTGTTTGTAGTACCTAATCACAAAATAAATG
130 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
* * * * *
544270 AGGATCATTACTAGAATACATGTTTATCTCATTTGAGCCACGAACTTAGACTTTACCAAAATTGG
195 AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG
* * * * *
544335 TGGGAAAAATGCATTTTTTGTGAAACCAAAATATCAATATCGTGTATCCTAATGAGAAGACCATG
260 TGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATG
* * * * * * *
544400 TTTATGGTGCCTTATCCTAAAAAGATTAGCGATTAGTATGACTATTCATGTTTGTCTTATTTAAG
325 TTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAG
* * * * * **
544465 AGACAAACTTTAATTCTATCAAAAACGGTGTAAAGAAAAGCTTTTCTTACAACACCAAAGTATTG
390 AGACAAACTTTGATTCTATCAAAAACTGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCA
* **
544530 ATGTCAAGTATCCTAAAGAA-A
455 ATGTCATGTATCCTATTGAAGA
* * * * *
544551 GGAATGTGTTTTAGGTTCCTAATCTTGAAAATATTAGAGACTGTTACGAGAATCGATGCTTGTCT
1 -GAATGTGTTTTTGGTTCCCAATCTTGAAAATAATGGAGATTGTTACGAGAATCGATGCTTGTCT
* * ** * *
544616 TATTTAAGGGATGAACTATCATTTTACTGAAAATAGGGCAAATAAAAGATTTCCATGTAAAAGAA
65 TATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAA
* ** ** * * *
544681 AGTCATCAATAAGATTTATCCTAACAAGGAGAATGTGCTTATAGTGCCTAATCACAGAATGAATA
130 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
* *
544746 AAGATCGTTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGG
195 AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG
* * * *
544811 TGGGAAAAATGGCTTTCTTGTGAAACCAAAATATCAATATCGTGTATCCTAATGAGAAGACCATG
260 TGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATG
* * ** * * * *
544876 TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTTGTATGACAATTTATGCTTGTCTTCTTTAAA
325 TTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAG
* * * ** * *
544941 AGGA-AAAATTTGATTCCATCAAAAAC-GATGGAAAGAAAAGCTTTTGTCACGACACCAAGGCAT
390 A-GACAAACTTTGATTCTATCAAAAACTG-TGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCAT
* *
545004 CAATGTCATGTATCCTATTAAAGG
453 CAATGTCATGTATCCTATTGAAGA
** * * * * * *
545028 GAATGTGTTTCAGGTTCTCAATCCTGAAAATAATGGAGACTATTACAAGAATCGATAG-TTGTTT
1 GAATGTGTTTTTGGTTCCCAATCTTGAAAATAATGGAGATTGTTACGAGAATCGAT-GCTTGTCT
* * * * *
545092 TATTTAAGGGTTGAATTTTGATTTTGAGGAAAGTAGGGCAAAGAAATGATTTCCATGCAAAAGAA
65 TATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAA
* * *
545157 AATCGTCAATATCATTTATCCTAATGAGGATAATGTGCTTATAGTGCCTAATCACAAAATGAATG
130 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
* * * * * *
545222 AAAATTATTACTAGAATCCATGTTTATCTTATTTGAGGCACAAACTTAGACTTTACAAAAATTGT
195 AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG
* ** *
545287 TGAGAAAAATGCCTTTCTTGCGAAACCAAAACA-CAAATATCGCAT-TCCTAATGAGAGGACTAT
260 TGGGAAAAATGCCTTTCTTGCGAAACCAAAACATC-AATATCGTGTATCCTAATGAGAAGACTAT
* * *
545350 GTTTACGGTGCCTAATCTTGAAAAGAATGGGGAGTAGTATGACTATTCATGTTTGTCTTATTTAA
324 GTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAA
* * * *
545415 GAGACAAAATTTGATTCTATCAAAAAC-GATGGAAACAAAAGCTTTTCTTGCAGCACCAAGGCAT
389 GAGACAAACTTTGATTCTATCAAAAACTG-TGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCAT
* * * *
545479 CAGTTTCATGTATGCTATTGGAGA
453 CAATGTCATGTATCCTATTGAAGA
* * * * * * *
545503 AAATTTTGTTTTAGGTTCCTAATCTTGAAAATAATGGATGCA--ATTACGAGAATTGATGTTTGT
1 GAA-TGTGTTTTTGGTTCCCAATCTTGAAAATAATGGA-G-ATTGTTACGAGAATCGATGCTTGT
** ** * *
545566 CTTATTTAAGCAAAAAACCTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTAT-CGTGCAATA
63 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT-TCCATGCAA-A
* * *
545630 A-AAAATCATCAATATCATTTATCCTAATTAGGAGAATGCGTTTATAGAT-CCTAATCATAAAAT
126 AGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAG-TGCCTAATCACAAAAT
* * **
545693 GAAAGAAGATCATTACTAGAATCTACATTTGTCTCATTTGAGG--C--AC--A-A----AC----
190 GAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAA
* * * * * *
545743 ATTGGTGGGAAAAAAGCCTTTCTTGCAAAACCAAAGCACCAATATCATGTATCCTAATAAGAAGA
255 ATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGA
* * *
545808 CTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATCAGTGTGAGTATTCAAGTTTGTCTTAT
320 CTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTAT
* * * ** *
545873 TTAAGAGACAAGCTTTGATTCTAT-AAAAAATGATGGAACGAAAAGCTTTTCTTGTGACACGAAA
385 TTAAGAGACAAACTTTGATTCTATCAAAAACTG-TGGAAAGAAAAGCTTTTCTTGCAACACCAAA
* * **
545937 GCATCAATATCAAGTATCCTAAAGAA-A
449 GCATCAATGTCATGTATCCTATTGAAGA
* *
545964 GGAATGTGTTTTAT-GTTCCCAATCCTGAAAAATAATGGAGATTGTTATGAGAATCGATGCTTGT
1 -GAATGTGTTTT-TGGTTCCCAATCTTG-AAAATAATGGAGATTGTTACGAGAATCGATGCTTGT
* ** * *
546028 CTAATTTAAGGGATGAACTACGATTTTAAGCAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAG
63 CTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAG
* * * ** * *
546093 AAATTCATAAATATCATTTGTCCTAGGGAGGAGAATGTGTTTACAATGCCTAATCACAAAATGGA
128 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAT-GA
* *
546158 A-GAAGATCATTACTAGAATCAATGTCTGTCTCATTTGAGG
192 ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGG
546198 AAAAATGCCT
Statistics
Matches: 3399, Mismatches: 576, Indels: 113
0.83 0.14 0.03
Matches are distributed among these distances:
460 1 0.00
461 69 0.02
462 304 0.09
463 3 0.00
465 2 0.00
469 1 0.00
470 1 0.00
472 28 0.01
473 94 0.03
474 205 0.06
475 669 0.20
476 1408 0.41
477 427 0.13
478 184 0.05
479 3 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (476 bp):
GAATGTGTTTTTGGTTCCCAATCTTGAAAATAATGGAGATTGTTACGAGAATCGATGCTTGTCTT
ATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
ATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
AGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT
GGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATGT
TTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGA
GACAAACTTTGATTCTATCAAAAACTGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAA
TGTCATGTATCCTATTGAAGA
Found at i:546794 original size:20 final size:20
Alignment explanation
Indices: 546766--546832 Score: 67
Period size: 20 Copynumber: 3.7 Consensus size: 20
546756 TTTCAACGAT
546766 TTGTATCGATACATAAAATA
1 TTGTATCGATACATAAAATA
*
546786 TTGTGTCGATAC-------A
1 TTGTATCGATACATAAAATA
546799 TTGTATCGATACATAAAATA
1 TTGTATCGATACATAAAATA
*
546819 TTGTGTCGATACAT
1 TTGTATCGATACAT
546833 TGTATCGATA
Statistics
Matches: 37, Mismatches: 3, Indels: 14
0.69 0.06 0.26
Matches are distributed among these distances:
13 12 0.32
20 25 0.68
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.37
Consensus pattern (20 bp):
TTGTATCGATACATAAAATA
Found at i:546803 original size:33 final size:33
Alignment explanation
Indices: 546766--546847 Score: 164
Period size: 33 Copynumber: 2.5 Consensus size: 33
546756 TTTCAACGAT
546766 TTGTATCGATACATAAAATATTGTGTCGATACA
1 TTGTATCGATACATAAAATATTGTGTCGATACA
546799 TTGTATCGATACATAAAATATTGTGTCGATACA
1 TTGTATCGATACATAAAATATTGTGTCGATACA
546832 TTGTATCGATACATAA
1 TTGTATCGATACATAA
546848 GTTTTGTATC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 49 1.00
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.37
Consensus pattern (33 bp):
TTGTATCGATACATAAAATATTGTGTCGATACA
Found at i:546922 original size:13 final size:13
Alignment explanation
Indices: 546904--546930 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
546894 ACATTACTCA
546904 AATGTATCGATAC
1 AATGTATCGATAC
546917 AATGTATCGATAC
1 AATGTATCGATAC
546930 A
1 A
546931 CTGATCTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:546982 original size:52 final size:52
Alignment explanation
Indices: 546939--547067 Score: 240
Period size: 52 Copynumber: 2.5 Consensus size: 52
546929 CACTGATCTT
*
546939 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
546991 TGTATCGATACATGCAAGCAAATTTGCCCAGATGTATCGATACACTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
547043 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
547068 TCATATTTCG
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 74 1.00
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Done.