Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold409
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3905031
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
File 13 of 25
Found at i:1863168 original size:122 final size:121
Alignment explanation
Indices: 1862927--1863168 Score: 274
Period size: 122 Copynumber: 2.0 Consensus size: 121
1862917 CAGTTTTTCA
** * *
1862927 AAGTCCACGACTCAATGGCATCCTTTTTCTTCCAAGTCCATGACTCAATGGCATCTTTTCCTAGT
1 AAGTCCACGACTCAATGGCATCCTTTTTCTTCCAAGTCCACAACTCAATGGCACCTTTT-CAAGT
* * * **
1862992 CCACGACTTAGTGGCATCCTTTTTCTTCGAAGTCCATGACTCAGTGGCATCTCTTCC
65 CCACAACTTAGTGGCATCCTTTTTCTTCAAAGCCCACAACTCAGTGGCATCTCTTCC
* * * **
1863049 AAGTCCACGA-TGCAGTGGCATCTTTTTTCTTCTAAGTCCACAACTCCGTGGCACCCTTTT-AAG
1 AAGTCCACGACT-CAATGGCATCCTTTTTCTTCCAAGTCCACAACTCAATGGCA-CCTTTTCAAG
* *
1863112 TCCATAACTTAGTGGCATCCTTTTTCTTTTCAAAGCCCACAACTCTGTGGCA-CTCTT
64 TCCACAACTTAGTGGCATCCTTTTTC--TTCAAAGCCCACAACTCAGTGGCATCTCTT
1863169 TTTCCTTTTA
Statistics
Matches: 100, Mismatches: 16, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
121 27 0.27
122 49 0.49
123 24 0.24
ACGTcount: A:0.21, C:0.30, G:0.15, T:0.34
Consensus pattern (121 bp):
AAGTCCACGACTCAATGGCATCCTTTTTCTTCCAAGTCCACAACTCAATGGCACCTTTTCAAGTC
CACAACTTAGTGGCATCCTTTTTCTTCAAAGCCCACAACTCAGTGGCATCTCTTCC
Found at i:1863193 original size:34 final size:34
Alignment explanation
Indices: 1863103--1863204 Score: 111
Period size: 34 Copynumber: 3.0 Consensus size: 34
1863093 TCCGTGGCAC
*
1863103 CCTTTTAAGTCCATAACT-TAGTGGCA-TCCTTTTT
1 CCTTTTAAGTCCACAACTCT-GTGGCACT-CTTTTT
*
1863137 -CTTTTCAAAGCCCACAACTCTGTGGCACTCTTTTT
1 CCTTTT--AAGTCCACAACTCTGTGGCACTCTTTTT
* *
1863172 CCTTTTAAGTCTACAACTCTGTGGCACCCTTTT
1 CCTTTTAAGTCCACAACTCTGTGGCACTCTTTT
1863205 AAGCCCATAC
Statistics
Matches: 58, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
33 5 0.09
34 24 0.41
35 22 0.38
36 7 0.12
ACGTcount: A:0.20, C:0.28, G:0.12, T:0.40
Consensus pattern (34 bp):
CCTTTTAAGTCCACAACTCTGTGGCACTCTTTTT
Found at i:1863370 original size:96 final size:96
Alignment explanation
Indices: 1863221--1863434 Score: 247
Period size: 96 Copynumber: 2.2 Consensus size: 96
1863211 ATACAAGTTG
* *
1863221 GTGGCAACCCTTTCTAAAGCCCACACAAACTAGTGGCAACCATTTCTAAAGCCCACACAAACTAG
1 GTGGCAACCCCTTCTAAAGCCCACACAAACTAGCGGCAACCATTTCTAAAGCCCACACAAACTAG
*
1863286 TGGCAACCTTCTTCAAAAGCCCACATAAGTCA
66 TGGCAACCCT-TTCAAAAGCCCACATAAGTCA
* * * *
1863318 GTGGCAACCCCTT-TAAAGCCCACGCAAGCTGGCGGCAAGCC--TTCTCAAAGCCCACACAAGCT
1 GTGGCAACCCCTTCTAAAGCCCACACAAACTAGCGGCAA-CCATTTCT-AAAGCCCACACAAACT
* * * **
1863380 GGTGGCAACCCTTTCAAATGTCCACATAAGTTG
64 AGTGGCAACCCTTTCAAAAGCCCACATAAGTCA
* *
1863413 GTGGCATCTCCTTCT-AAGCCCA
1 GTGGCAACCCCTTCTAAAGCCCA
1863435 AGGTCGCTAG
Statistics
Matches: 100, Mismatches: 14, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
95 39 0.39
96 47 0.47
97 14 0.14
ACGTcount: A:0.30, C:0.33, G:0.17, T:0.20
Consensus pattern (96 bp):
GTGGCAACCCCTTCTAAAGCCCACACAAACTAGCGGCAACCATTTCTAAAGCCCACACAAACTAG
TGGCAACCCTTTCAAAAGCCCACATAAGTCA
Found at i:1863405 original size:32 final size:31
Alignment explanation
Indices: 1863192--1863418 Score: 201
Period size: 32 Copynumber: 7.2 Consensus size: 31
1863182 CTACAACTCT
* * *
1863192 GTGGC-ACCCTTT-TAAGCCCATACAAGTTG
1 GTGGCAACCCTTTCAAAGCCCACACAAGCTG
* *
1863221 GTGGCAACCCTTTCTAAAGCCCACACAAACTA
1 GTGGCAACCCTTTC-AAAGCCCACACAAGCTG
* * *
1863253 GTGGCAACCATTTCTAAAGCCCACACAAACTA
1 GTGGCAACCCTTTC-AAAGCCCACACAAGCTG
* * *
1863285 GTGGCAACCTTCTTCAAAAGCCCACATAAG-TCA
1 GTGGCAACCCT-TTC-AAAGCCCACACAAGCT-G
*
1863318 GTGGCAACCCCTTT-AAAGCCCACGCAAGCTG
1 GTGGCAA-CCCTTTCAAAGCCCACACAAGCTG
* *
1863349 GCGGCAAGCCTTCTCAAAGCCCACACAAGCTG
1 GTGGCAACCCTT-TCAAAGCCCACACAAGCTG
* * *
1863381 GTGGCAACCCTTTCAAATGTCCACATAAGTTG
1 GTGGCAACCCTTTCAAA-GCCCACACAAGCTG
1863413 GTGGCA
1 GTGGCA
1863419 TCTCCTTCTA
Statistics
Matches: 166, Mismatches: 22, Indels: 17
0.81 0.11 0.08
Matches are distributed among these distances:
29 5 0.03
30 11 0.07
31 24 0.14
32 98 0.59
33 25 0.15
34 3 0.02
ACGTcount: A:0.30, C:0.31, G:0.19, T:0.20
Consensus pattern (31 bp):
GTGGCAACCCTTTCAAAGCCCACACAAGCTG
Found at i:1863469 original size:21 final size:20
Alignment explanation
Indices: 1863445--1863512 Score: 50
Period size: 21 Copynumber: 3.2 Consensus size: 20
1863435 AGGTCGCTAG
1863445 CCTTGAATCAGCACATTAGCA
1 CCTTGAATCAGCA-ATTAGCA
* *
1863466 CCTTTAAGTC--CAATATTGCTA
1 CCTTGAA-TCAGCAAT-TAGC-A
1863487 GCCTTGAATCAGCATATTAGCA
1 -CCTTGAATCAGCA-ATTAGCA
1863509 CCTT
1 CCTT
1863513 TACCACCTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 14
0.67 0.07 0.26
Matches are distributed among these distances:
19 2 0.06
20 5 0.14
21 13 0.36
22 9 0.25
23 5 0.14
24 2 0.06
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.31
Consensus pattern (20 bp):
CCTTGAATCAGCAATTAGCA
Found at i:1863503 original size:22 final size:23
Alignment explanation
Indices: 1863440--1863507 Score: 65
Period size: 22 Copynumber: 3.1 Consensus size: 23
1863430 GCCCAAGGTC
*
1863440 GCTAGCCTTGAATCAGCACATTA
1 GCTAGCCTTGAATCAGCATATTA
*
1863463 GC-A-CCTTTAAGTC--CAATATT-
1 GCTAGCCTTGAA-TCAGC-ATATTA
1863483 GCTAGCCTTGAATCAGCATATTA
1 GCTAGCCTTGAATCAGCATATTA
1863506 GC
1 GC
1863508 ACCTTTACCA
Statistics
Matches: 35, Mismatches: 3, Indels: 14
0.67 0.06 0.27
Matches are distributed among these distances:
20 3 0.09
21 13 0.37
22 14 0.40
23 5 0.14
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (23 bp):
GCTAGCCTTGAATCAGCATATTA
Found at i:1863531 original size:52 final size:52
Alignment explanation
Indices: 1863464--1863613 Score: 192
Period size: 52 Copynumber: 2.9 Consensus size: 52
1863454 AGCACATTAG
* * *
1863464 CACCTTTAAGTCCAATATTGCTAGCCTTGAATCAGCATATTAGCACCTTTAC
1 CACCTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTATAC
* * * **
1863516 CACCTTTAAATCCAATATCGTTGGGTTTGAATCAGCATATTGGCACCTATAC
1 CACCTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTATAC
* * * *
1863568 CACCTTCAAGTCCAATGTCACTAGCCTTGAATCAGCACATTGGCAC
1 CACCTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCAC
1863614 AAGTCCAATA
Statistics
Matches: 81, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
52 81 1.00
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.30
Consensus pattern (52 bp):
CACCTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTATAC
Found at i:1863634 original size:39 final size:39
Alignment explanation
Indices: 1863574--1863691 Score: 182
Period size: 39 Copynumber: 3.0 Consensus size: 39
1863564 ATACCACCTT
* * * *
1863574 CAAGTCCAATGTCACTAGCCTTGAATCAGCACATTGGCA
1 CAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
1863613 CAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
1 CAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
* *
1863652 CAAGCCCAATATCGCTGGCCTTGAATCAACATATTGGCA
1 CAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
1863691 C
1 C
1863692 CTTTGCCATC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 73 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.24
Consensus pattern (39 bp):
CAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
Found at i:1863743 original size:52 final size:52
Alignment explanation
Indices: 1863653--1863786 Score: 169
Period size: 52 Copynumber: 2.6 Consensus size: 52
1863643 ATATTGGCAC
* * * *
1863653 AAGCCCAATATCGCTGGCCTTGAATCAACATATTGGCACCTTTGCCATCTTT
1 AAGCCCAATGTCGCTGGCCTTGAATCAGCACATGGGCACCTTTGCCATCTTT
* * *
1863705 AAGTCTAATGTCGCTGGCCTTGAATCAGCACATGGGCACCTTTGTCATCTTT
1 AAGCCCAATGTCGCTGGCCTTGAATCAGCACATGGGCACCTTTGCCATCTTT
* * * *
1863757 AAGCCCAATGTTGTTGGCCTTAAATTAGCA
1 AAGCCCAATGTCGCTGGCCTTGAATCAGCA
1863787 TATTAGAACC
Statistics
Matches: 69, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
52 69 1.00
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (52 bp):
AAGCCCAATGTCGCTGGCCTTGAATCAGCACATGGGCACCTTTGCCATCTTT
Found at i:1865619 original size:20 final size:21
Alignment explanation
Indices: 1865580--1865620 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
1865570 ATAGCCCATG
*
1865580 TTCATGCGTTTTGAGCTATGT
1 TTCATGCATTTTGAGCTATGT
*
1865601 TTCATGCATTTTTAG-TATGT
1 TTCATGCATTTTGAGCTATGT
1865621 CCAACACCTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.17, C:0.12, G:0.20, T:0.51
Consensus pattern (21 bp):
TTCATGCATTTTGAGCTATGT
Found at i:1869994 original size:28 final size:28
Alignment explanation
Indices: 1869954--1870017 Score: 101
Period size: 28 Copynumber: 2.3 Consensus size: 28
1869944 ACCGGGGTTT
*
1869954 GAGTATCCTCTCATAAATAACGAAGTTG
1 GAGTATCCTCTCAGAAATAACGAAGTTG
*
1869982 GAGTATCCTCTCAGAAATAACGAGGTTG
1 GAGTATCCTCTCAGAAATAACGAAGTTG
*
1870010 AAGTATCC
1 GAGTATCC
1870018 CCGATTGTGG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (28 bp):
GAGTATCCTCTCAGAAATAACGAAGTTG
Found at i:1870077 original size:79 final size:80
Alignment explanation
Indices: 1869978--1870146 Score: 225
Period size: 79 Copynumber: 2.1 Consensus size: 80
1869968 AAATAACGAA
* * * * *
1869978 GTTGGAGTAT-CCTCTCAGAAATAACGAGGTTGAAGTATCCCCGATTGTGGAAAATCGATGTTTT
1 GTTGGAGTATCCCTCTAAGAAATAACGAGGTTGAAGCATCCCCGATGGTGAAAAATCAATGTTTT
*
1870042 AGAAATAAAGCTAGG
66 AGAAATAAAGCCAGG
* * *
1870057 GTTGGAGTATCCCT-TAAGAAATAATGGGGTTGGAGCATCCCCGATGGTGAAAAATCAATGTTTT
1 GTTGGAGTATCCCTCTAAGAAATAACGAGGTTGAAGCATCCCCGATGGTGAAAAATCAATGTTTT
* *
1870121 AGAAATAAGGCCGGG
66 AGAAATAAAGCCAGG
1870136 GTTGGAGTATC
1 GTTGGAGTATC
1870147 TCTTCGAAGG
Statistics
Matches: 78, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
79 75 0.96
80 3 0.04
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.27
Consensus pattern (80 bp):
GTTGGAGTATCCCTCTAAGAAATAACGAGGTTGAAGCATCCCCGATGGTGAAAAATCAATGTTTT
AGAAATAAAGCCAGG
Found at i:1870160 original size:21 final size:21
Alignment explanation
Indices: 1870134--1870188 Score: 110
Period size: 21 Copynumber: 2.6 Consensus size: 21
1870124 AATAAGGCCG
1870134 GGGTTGGAGTATCTCTTCGAA
1 GGGTTGGAGTATCTCTTCGAA
1870155 GGGTTGGAGTATCTCTTCGAA
1 GGGTTGGAGTATCTCTTCGAA
1870176 GGGTTGGAGTATC
1 GGGTTGGAGTATC
1870189 CTTGATTATA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.18, C:0.13, G:0.36, T:0.33
Consensus pattern (21 bp):
GGGTTGGAGTATCTCTTCGAA
Found at i:1871360 original size:8 final size:9
Alignment explanation
Indices: 1871346--1871412 Score: 77
Period size: 8 Copynumber: 7.7 Consensus size: 9
1871336 AACCATTATC
1871346 ATTTTTTTG
1 ATTTTTTTG
*
1871355 TTTTTTTTG
1 ATTTTTTTG
1871364 -TTTTTTT-
1 ATTTTTTTG
1871371 ATTTTTTTG
1 ATTTTTTTG
*
1871380 ATCTTTTTG
1 ATTTTTTTG
1871389 AATTTTTTT-
1 -ATTTTTTTG
*
1871398 ATTTCTTTG
1 ATTTTTTTG
1871407 ATTTTT
1 ATTTTT
1871413 AATTTTTTTA
Statistics
Matches: 49, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
8 21 0.43
9 21 0.43
10 7 0.14
ACGTcount: A:0.10, C:0.03, G:0.07, T:0.79
Consensus pattern (9 bp):
ATTTTTTTG
Found at i:1871376 original size:9 final size:9
Alignment explanation
Indices: 1871347--1871412 Score: 53
Period size: 9 Copynumber: 7.4 Consensus size: 9
1871337 ACCATTATCA
*
1871347 TTTTTTTGT
1 TTTTTTTAT
*
1871356 TTTTTTT-G
1 TTTTTTTAT
1871364 TTTTTTTAT
1 TTTTTTTAT
*
1871373 TTTTTTGAT
1 TTTTTTTAT
* * *
1871382 CTTTTTGAA
1 TTTTTTTAT
1871391 TTTTTTTAT
1 TTTTTTTAT
* *
1871400 TTCTTTGAT
1 TTTTTTTAT
1871409 TTTT
1 TTTT
1871413 AATTTTTTTA
Statistics
Matches: 45, Mismatches: 11, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
8 7 0.16
9 38 0.84
ACGTcount: A:0.09, C:0.03, G:0.08, T:0.80
Consensus pattern (9 bp):
TTTTTTTAT
Found at i:1871386 original size:27 final size:25
Alignment explanation
Indices: 1871346--1871412 Score: 71
Period size: 27 Copynumber: 2.6 Consensus size: 25
1871336 AACCATTATC
* * *
1871346 ATTTTTTTGTTTTTTTTGTTTTTTT
1 ATTTTTTTGATTTTTTGGATTTTTT
*
1871371 ATTTTTTTGATCTTTTTGAATTTTTTT
1 ATTTTTTTGAT-TTTTTGGA-TTTTTT
*
1871398 ATTTCTTTGATTTTT
1 ATTTTTTTGATTTTT
1871413 AATTTTTTTA
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
25 10 0.29
26 9 0.26
27 16 0.46
ACGTcount: A:0.10, C:0.03, G:0.07, T:0.79
Consensus pattern (25 bp):
ATTTTTTTGATTTTTTGGATTTTTT
Found at i:1871420 original size:9 final size:8
Alignment explanation
Indices: 1871346--1871423 Score: 59
Period size: 8 Copynumber: 9.2 Consensus size: 8
1871336 AACCATTATC
1871346 ATTTTTTT
1 ATTTTTTT
*
1871354 GTTTTTTTT
1 -ATTTTTTT
*
1871363 GTTTTTTT
1 ATTTTTTT
1871371 ATTTTTTT
1 ATTTTTTT
*
1871379 GATCTTTTTGA
1 -AT-TTTTT-T
1871390 ATTTTTTT
1 ATTTTTTT
*
1871398 ATTTCTTTG
1 ATTT-TTTT
*
1871407 A-TTTTTA
1 ATTTTTTT
1871414 ATTTTTTT
1 ATTTTTTT
1871422 AT
1 AT
1871424 GTCAAAAATT
Statistics
Matches: 56, Mismatches: 8, Indels: 11
0.75 0.11 0.15
Matches are distributed among these distances:
7 4 0.07
8 27 0.48
9 18 0.32
10 7 0.12
ACGTcount: A:0.13, C:0.03, G:0.06, T:0.78
Consensus pattern (8 bp):
ATTTTTTT
Found at i:1872155 original size:43 final size:43
Alignment explanation
Indices: 1872107--1872197 Score: 137
Period size: 43 Copynumber: 2.1 Consensus size: 43
1872097 AGAAGGATGA
* * *
1872107 TAAAGGTGCCAATATGCTAATTCAAGGCCAGTGATATTGGACT
1 TAAAGGTGCCAATATACTAATTCAAGGCCAGCGACATTGGACT
* *
1872150 TAAAGGTGCCGATATACTGATTCAAGGCCAGCGACATTGGACT
1 TAAAGGTGCCAATATACTAATTCAAGGCCAGCGACATTGGACT
1872193 TAAAG
1 TAAAG
1872198 ATGACAAAGG
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (43 bp):
TAAAGGTGCCAATATACTAATTCAAGGCCAGCGACATTGGACT
Found at i:1872351 original size:104 final size:104
Alignment explanation
Indices: 1872166--1872353 Score: 261
Period size: 104 Copynumber: 1.8 Consensus size: 104
1872156 TGCCGATATA
* * * *
1872166 CTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGGTGCCAATATGCTGATTCAAGGTC
1 CTGATTCAAGGCCAGCGACATTAGACTTAAAGATGACAAAGATGCCAATATGCTAATTCAAGGCC
* * * *
1872231 AGTGATAGTGGGCTTAAAGGTGTAAAGAATGTCAATGTG
66 AGCGATACTAGACTTAAAGGTGTAAAGAATGTCAATGTG
* * *
1872270 CTGATTCACGGCCAGCGACATTAGACTTGAAGATGA-AAAGAATGCCAATGTGCTAATTCAAGGC
1 CTGATTCAAGGCCAGCGACATTAGACTTAAAGATGACAAAG-ATGCCAATATGCTAATTCAAGGC
1872334 CAGCGATACTAGACTTAAAG
65 CAGCGATACTAGACTTAAAG
1872354 ATGAAGATTT
Statistics
Matches: 72, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
103 4 0.06
104 68 0.94
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.23
Consensus pattern (104 bp):
CTGATTCAAGGCCAGCGACATTAGACTTAAAGATGACAAAGATGCCAATATGCTAATTCAAGGCC
AGCGATACTAGACTTAAAGGTGTAAAGAATGTCAATGTG
Found at i:1872358 original size:52 final size:52
Alignment explanation
Indices: 1872166--1872358 Score: 217
Period size: 52 Copynumber: 3.7 Consensus size: 52
1872156 TGCCGATATA
* * *
1872166 CTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAG-GTGCCAATATG
1 CTGATTCAAGGCCAGCGACATTAGACTTAAAGATGA-AAAGAATGCCAATGTG
* * * * * * * * *
1872218 CTGATTCAAGGTCAGTGATAGTGGGCTTAAAGGTGTAAAGAATGTCAATGTG
1 CTGATTCAAGGCCAGCGACATTAGACTTAAAGATGAAAAGAATGCCAATGTG
* *
1872270 CTGATTCACGGCCAGCGACATTAGACTTGAAGATGAAAAGAATGCCAATGTG
1 CTGATTCAAGGCCAGCGACATTAGACTTAAAGATGAAAAGAATGCCAATGTG
* * *
1872322 CTAATTCAAGGCCAGCGATACTAGACTTAAAGATGAA
1 CTGATTCAAGGCCAGCGACATTAGACTTAAAGATGAA
1872359 GATTTAACGT
Statistics
Matches: 114, Mismatches: 26, Indels: 2
0.80 0.18 0.01
Matches are distributed among these distances:
51 4 0.04
52 110 0.96
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (52 bp):
CTGATTCAAGGCCAGCGACATTAGACTTAAAGATGAAAAGAATGCCAATGTG
Found at i:1872861 original size:175 final size:172
Alignment explanation
Indices: 1872568--1872895 Score: 405
Period size: 175 Copynumber: 1.9 Consensus size: 172
1872558 CACTAACTCA
*
1872568 TGGGCTTTAAAAGGATGCCACTGACTTGTGGGCTTTAAGCGGATGCCACTAACTTGTCGGCTTTG
1 TGGGCTTTAAAAGGATGCCACTGACTTGTGGGCTTTAAGCGGATGCCACCAACTTGTCGGCTTTG
* * * * * *
1872633 AATGGATGCCACTGATTCGTGGGCTTTGAAAGGGTGCCACTAACTCGTGGGCTTTA-AAATGGTG
66 AAAGGATGCCACTAACTCATGGGCATTGAAAGGATGCCACTAACTCGTGGGC-TTAGAAATGGTG
*
1872697 CCACTGACTTGTGGGCTTT-AAAAGGGTTGCCATCGACTTGTG
130 CCACTGACTGGTGGGCTTTGAAAAGGGTTGCCATCGACTTGTG
* * *
1872739 TGGGCTTTGAGAAAGGTTGCCACT-ACTTGTGTAGGCTTTGGAA-CGG-TGCCACCGACTTGTGG
1 TGGGCTTT-A-AAAGGATGCCACTGACTTGTG--GGCTTT--AAGCGGATGCCACCAACTTGTCG
* * * * *
1872801 GTTTTTGAAAGGATGCCACTAACTCATGGGCATTGGAAGGATGCCGCTGACTTGTGGGCTTAGAA
60 G-CTTTGAAAGGATGCCACTAACTCATGGGCATTGAAAGGATGCCACTAACTCGTGGGCTTAGAA
1872866 ATGGTGCCACTGACTGGTGGGCTTTGAAAA
124 ATGGTGCCACTGACTGGTGGGCTTTGAAAA
1872896 TATACTACTA
Statistics
Matches: 132, Mismatches: 16, Indels: 13
0.82 0.10 0.08
Matches are distributed among these distances:
171 8 0.06
172 8 0.06
173 12 0.09
174 23 0.17
175 75 0.57
176 6 0.05
ACGTcount: A:0.21, C:0.19, G:0.31, T:0.29
Consensus pattern (172 bp):
TGGGCTTTAAAAGGATGCCACTGACTTGTGGGCTTTAAGCGGATGCCACCAACTTGTCGGCTTTG
AAAGGATGCCACTAACTCATGGGCATTGAAAGGATGCCACTAACTCGTGGGCTTAGAAATGGTGC
CACTGACTGGTGGGCTTTGAAAAGGGTTGCCATCGACTTGTG
Found at i:1872914 original size:259 final size:255
Alignment explanation
Indices: 1872550--1873017 Score: 620
Period size: 259 Copynumber: 1.8 Consensus size: 255
1872540 TGGGATTTAA
* * *
1872550 AAAGGTGCCACTAACTCATGGGCTTTAAAAGGATGCCACTGACTTGTGGGCTTTAAGCGGATGCC
1 AAAGGTGCCACTAACTCATGGGCATTAAAAGGATGCCACTGACTTGTGGGCTTGAAACGGATGCC
* ** * * * * * *
1872615 ACTAACTTGTCGGCTTTGAATGGATGCCACTGATTCGTGGGCTTTGAAAGGGTGCCACTAACTCG
66 ACTAACTGGTCGGCTTTGAAAAGATACCACTAACTCGTGGGCTTTAAAAGAGTACCACTAACTCG
* * * *
1872680 TGGGCTTTAAAATGG-TGCCACTGACTTGTGGGCTTT-AAAAGGGTTGCCATCGACTTGTGTGGG
131 TGGACTTTAAAA-GGTTGCCACTGACTTATGGGCTTTGAAAA-GG-TGCCACCGAC-T-CGTGGG
1872743 CTTT-GAGAAAGGTTGCCACTACTTGTGTAGGCTTTGGAACGGTGCCACCGACTTGTGGGTTTTT
191 CTTTGGAG-AAGGTTGCCACTACTTGTGTAGGCTTTGGAACGGTGCCACCGACTTGTGGGTTTTT
1872807 G
255 G
** * *
1872808 AAAGGATGCCACTAACTCATGGGCATTGGAAGGATGCCGCTGACTTGTGGGCTTAGAAATGG-TG
1 AAAGG-TGCCACTAACTCATGGGCATTAAAAGGATGCCACTGACTTGTGGGCTT-GAAACGGATG
* * * *
1872872 CCACTGACTGGTGGGCTTTGAAAATATACTACTAACTCGTGGGCTTTAAAAGAGTACCACTAACT
64 CCACTAACTGGTCGGCTTTGAAAAGATACCACTAACTCGTGGGCTTTAAAAGAGTACCACTAACT
1872937 CGTGGACTTTAAAAGGTTGCCACTGACTTATGGGCTTTGAAAAGGTGCCACCGACTCGTGGGCTT
129 CGTGGACTTTAAAAGGTTGCCACTGACTTATGGGCTTTGAAAAGGTGCCACCGACTCGTGGGCTT
1873002 TGGAGAAGGTTGCCAC
194 TGGAGAAGGTTGCCAC
1873018 CAACTTGTAT
Statistics
Matches: 181, Mismatches: 24, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
256 20 0.11
257 4 0.02
258 16 0.09
259 133 0.73
260 8 0.04
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (255 bp):
AAAGGTGCCACTAACTCATGGGCATTAAAAGGATGCCACTGACTTGTGGGCTTGAAACGGATGCC
ACTAACTGGTCGGCTTTGAAAAGATACCACTAACTCGTGGGCTTTAAAAGAGTACCACTAACTCG
TGGACTTTAAAAGGTTGCCACTGACTTATGGGCTTTGAAAAGGTGCCACCGACTCGTGGGCTTTG
GAGAAGGTTGCCACTACTTGTGTAGGCTTTGGAACGGTGCCACCGACTTGTGGGTTTTTG
Found at i:1873003 original size:28 final size:28
Alignment explanation
Indices: 1872418--1873075 Score: 356
Period size: 28 Copynumber: 22.6 Consensus size: 28
1872408 AGAAGGGTTA
* *
1872418 TGTGGGCTTT-AGAAGGGTTGCCATTGACT
1 TGTGGGCTTTGA-AAAGG-TGCCACTGACT
* *
1872447 TGTGCAAGCTTTGAGAAAGGTTGCCAC-CAGCT
1 TGTG--GGCTTTGA-AAAGG-TGCCACTGA-CT
* *
1872479 TGTGTCGGCTTTCG-AAGGGTGCCACCGACT
1 TGTG--GGCTTT-GAAAAGGTGCCACTGACT
* * *
1872509 TGTAGGCTTTTGAAATGATGCCACTGACT
1 TGTGGGC-TTTGAAAAGGTGCCACTGACT
** * * *
1872538 CATGGGATTTAAAAAGGTGCCACTAACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
**
1872566 CATGGGCTTT-AAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
** *
1872594 TGTGGGCTTT-AAGCGGATGCCACTAACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
* *
1872622 TGTCGGCTTTG-AATGGATGCCACTGA-T
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
* *
1872649 TCGTGGGCTTTGAAAGGGTGCCACTAACT
1 T-GTGGGCTTTGAAAAGGTGCCACTGACT
*
1872678 CGTGGGCTTT-AAAATGGTGCCACTGACT
1 TGTGGGCTTTGAAAA-GGTGCCACTGACT
1872706 TGTGGGCTTT-AAAAGGGTTGCCA-TCGACTT
1 TGTGGGCTTTGAAAA-GG-TGCCACT-GAC-T
1872736 GTGTGGGCTTTGAGAAAGGTTGCCACT-ACT
1 -TGTGGGCTTTGA-AAAGG-TGCCACTGACT
* * *
1872766 TGTGTAGGCTTTGGAACGGTGCCACCGACT
1 TGTG--GGCTTTGAAAAGGTGCCACTGACT
* *
1872796 TGTGGGTTTTTG-AAAGGATGCCACTAACT
1 TGTGGG-CTTTGAAAAGG-TGCCACTGACT
** * * *
1872825 CATGGGCATTG-GAAGGATGCCGCTGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
* *
1872853 TGTGGGCTTAGAAATGGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* ** * * *
1872881 GGTGGGCTTTGAAAATATACTACTAACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* * *
1872909 CGTGGGCTTT-AAAAGAGTACCACTAACT
1 TGTGGGCTTTGAAAAG-GTGCCACTGACT
* *
1872937 CGTGGACTTT-AAAAGGTTGCCACTGACT
1 TGTGGGCTTTGAAAAGG-TGCCACTGACT
* *
1872965 TATGGGCTTTGAAAAGGTGCCACCGACT
1 TGTGGGCTTTGAAAAGGTGCCACTGACT
* * **
1872993 CGTGGGCTTTGGAGAAGGTTGCCACCAACT
1 TGTGGGCTTT-GAAAAGG-TGCCACTGACT
* *
1873023 TGTATGGGCTTTAGAGAAGGTTGCCACTAACTTT
1 TG--TGGGCTTT-GAAAAGG-TGCCACTGAC--T
*
1873057 TGTGGGCTTTAGAGAAGGT
1 TGTGGGCTTT-GAAAAGGT
1873076 TTCTTCACTA
Statistics
Matches: 506, Mismatches: 87, Indels: 70
0.76 0.13 0.11
Matches are distributed among these distances:
27 16 0.03
28 265 0.52
29 78 0.15
30 35 0.07
31 31 0.06
32 73 0.14
33 5 0.01
34 3 0.01
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (28 bp):
TGTGGGCTTTGAAAAGGTGCCACTGACT
Found at i:1873033 original size:32 final size:32
Alignment explanation
Indices: 1872949--1873076 Score: 133
Period size: 32 Copynumber: 4.2 Consensus size: 32
1872939 TGGACTTTAA
** *
1872949 AAGGTTGCCACTGAC-T-TATGGGCTTT-GAA
1 AAGGTTGCCACCAACTTGTATGGGCTTTAGAG
* * *
1872978 AAGG-TGCCACCGACTCG--TGGGCTTTGGAG
1 AAGGTTGCCACCAACTTGTATGGGCTTTAGAG
1873007 AAGGTTGCCACCAACTTGTATGGGCTTTAGAG
1 AAGGTTGCCACCAACTTGTATGGGCTTTAGAG
* * *
1873039 AAGGTTGCCACTAACTTTTGTGGGCTTTAGAG
1 AAGGTTGCCACCAACTTGTATGGGCTTTAGAG
1873071 AAGGTT
1 AAGGTT
1873077 TCTTCACTAG
Statistics
Matches: 84, Mismatches: 9, Indels: 9
0.82 0.09 0.09
Matches are distributed among these distances:
28 17 0.20
29 10 0.12
30 11 0.13
32 46 0.55
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.29
Consensus pattern (32 bp):
AAGGTTGCCACCAACTTGTATGGGCTTTAGAG
Found at i:1873293 original size:28 final size:28
Alignment explanation
Indices: 1873261--1873314 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
1873251 TCACTAATTG
1873261 TGGACTTCGAAAAGATGCCACTGACTTA
1 TGGACTTCGAAAAGATGCCACTGACTTA
*
1873289 TGGACTTCGAAGAGATGCCACTGACT
1 TGGACTTCGAAAAGATGCCACTGACT
1873315 AGTCGACTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (28 bp):
TGGACTTCGAAAAGATGCCACTGACTTA
Found at i:1873322 original size:28 final size:28
Alignment explanation
Indices: 1873263--1873323 Score: 88
Period size: 28 Copynumber: 2.2 Consensus size: 28
1873253 ACTAATTGTG
*
1873263 GACTTCGAAAAGATGCCACTGACTTATG
1 GACTTCGAAAAGATGCCACTGACTTATC
*
1873291 GACTTCGAAGAGATGCCACTGAC-TAGTC
1 GACTTCGAAAAGATGCCACTGACTTA-TC
1873319 GACTT
1 GACTT
1873324 TGAGAAGGGA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 2 0.07
28 28 0.93
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (28 bp):
GACTTCGAAAAGATGCCACTGACTTATC
Found at i:1886512 original size:28 final size:28
Alignment explanation
Indices: 1886478--1886549 Score: 92
Period size: 28 Copynumber: 2.6 Consensus size: 28
1886468 GAAATAAAGC
*
1886478 CGGGGTTGGAGTATCCCCT-TGAAAATAA
1 CGGGGTTGGAGTATCCCCTCAG-AAATAA
* **
1886506 TGGGGTTGGAGTATCTTCTCAGAAATAA
1 CGGGGTTGGAGTATCCCCTCAGAAATAA
1886534 CGGGGTTGGAGTATCC
1 CGGGGTTGGAGTATCC
1886550 TCGATTGTGC
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
28 36 0.97
29 1 0.03
ACGTcount: A:0.25, C:0.15, G:0.32, T:0.28
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCTCAGAAATAA
Found at i:1886518 original size:107 final size:107
Alignment explanation
Indices: 1886372--1886627 Score: 327
Period size: 107 Copynumber: 2.4 Consensus size: 107
1886362 GAAACAAACT
* *** * * * *
1886372 GGGGTTGGAGTA-CCCTCTCAAAAATAACAAGATTAGAGTATCCTCTTAGAAATAATGGGGATGG
1 GGGGTTGGAGTATCCC-CTCGAAAATAATGGGGTTGGAGTATCCTCTCAGAAATAACGGGGATGG
*
1886436 AGTAT-CTCCAATTATGGAAAATCGATATTTTAGAAATAAAGCC
65 AGTATCCT-CAATTATGCAAAATCGATATTTTAGAAATAAAGCC
* * *
1886479 GGGGTTGGAGTATCCCCTTGAAAATAATGGGGTTGGAGTATCTTCTCAGAAATAACGGGGTTGGA
1 GGGGTTGGAGTATCCCCTCGAAAATAATGGGGTTGGAGTATCCTCTCAGAAATAACGGGGATGGA
* * *
1886544 GTATCCTCGATTGTGCAAAATCGATGTTTTAGAAATAAAGCC
66 GTATCCTCAATTATGCAAAATCGATATTTTAGAAATAAAGCC
* *
1886586 GGGGTTGGAGTATCCCCTCGGAAATAATGGGGTTGAAGTATC
1 GGGGTTGGAGTATCCCCTCGAAAATAATGGGGTTGGAGTATC
1886628 ACCGTTGGTG
Statistics
Matches: 129, Mismatches: 18, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
107 124 0.96
108 5 0.04
ACGTcount: A:0.32, C:0.14, G:0.27, T:0.28
Consensus pattern (107 bp):
GGGGTTGGAGTATCCCCTCGAAAATAATGGGGTTGGAGTATCCTCTCAGAAATAACGGGGATGGA
GTATCCTCAATTATGCAAAATCGATATTTTAGAAATAAAGCC
Found at i:1886597 original size:79 final size:79
Alignment explanation
Indices: 1886507--1886713 Score: 249
Period size: 79 Copynumber: 2.6 Consensus size: 79
1886497 TGAAAATAAT
* * *
1886507 GGGGTTGGAGTATCTTCTCAGAAATAACGGGGTTGGAGTATCCTCGATT-GTGCAAAATCGATGT
1 GGGGTTGGAGTATCTCCTCAGAAATAACGGGGTTGGAGTATCC-CGATTGGTGAAAAATCAATGT
1886571 TTTAGAAATAAAGCC
65 TTTAGAAATAAAGCC
* * * *
1886586 GGGGTTGGAGTATCCCCTCGGAAATAATGGGGTTGAAGTATCACCG-TTGGTGAAAAATCAATGT
1 GGGGTTGGAGTATCTCCTCAGAAATAACGGGGTTGGAGTATC-CCGATTGGTGAAAAATCAATGT
* *
1886650 TTTAGAAATAAGGCT
65 TTTAGAAATAAAGCC
* * *
1886665 AGGGTTGGAGTATCTCCT-TGAAAATAACGGGGTTAGAGTATCCCCGATT
1 GGGGTTGGAGTATCTCCTCAG-AAATAACGGGGTTGGAGTAT-CCCGATT
1886714 ATAGAAATTT
Statistics
Matches: 108, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
78 3 0.03
79 101 0.94
80 4 0.04
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.29
Consensus pattern (79 bp):
GGGGTTGGAGTATCTCCTCAGAAATAACGGGGTTGGAGTATCCCGATTGGTGAAAAATCAATGTT
TTAGAAATAAAGCC
Found at i:1887740 original size:15 final size:15
Alignment explanation
Indices: 1887699--1887740 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
1887689 TCTCTCTTCC
* *
1887699 TTTCATTGCAGGCCA
1 TTTCATTGCTGTCCA
*
1887714 TTTCATTACTGTCCA
1 TTTCATTGCTGTCCA
1887729 TTTCATTGCTGT
1 TTTCATTGCTGT
1887741 ACCCCTCATT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.17, C:0.24, G:0.14, T:0.45
Consensus pattern (15 bp):
TTTCATTGCTGTCCA
Found at i:1887909 original size:18 final size:18
Alignment explanation
Indices: 1887874--1887915 Score: 52
Period size: 17 Copynumber: 2.3 Consensus size: 18
1887864 AACAATCATC
1887874 ATTTTTTTGATCTTTTTG
1 ATTTTTTTGATCTTTTTG
1887892 AATTTTTTT-AT-TTCTTTG
1 -ATTTTTTTGATCTT-TTTG
1887910 ATTTTT
1 ATTTTT
1887916 AATTTTTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 8 0.36
18 6 0.27
19 8 0.36
ACGTcount: A:0.14, C:0.05, G:0.07, T:0.74
Consensus pattern (18 bp):
ATTTTTTTGATCTTTTTG
Found at i:1895940 original size:28 final size:28
Alignment explanation
Indices: 1895907--1896221 Score: 256
Period size: 28 Copynumber: 10.8 Consensus size: 28
1895897 ACCTTTCCTA
* *
1895907 AAAGTCCACTACTAAGTGGCATTTCTTC
1 AAAGTCCACGACTCAGTGGCATTTCTTC
** *
1895935 AAAGTCCGTGACTCAGTGGCATCTTTTCTC
1 AAAGTCCACGACTCAGTGGCAT-TTCT-TC
* * * *
1895965 CAAGTCCACAACTCAATGGCATTTCTTT
1 AAAGTCCACGACTCAGTGGCATTTCTTC
*
1895993 AAAGTCCATGACTCAGTGGCATTCATTTTCTTC
1 AAAGTCCACGACTCAGTGG----CA-TTTCTTC
* *
1896026 TAAGTCCACGACTCAGTGGCATCTTTTCTC
1 AAAGTCCACGACTCAGTGGCAT-TTCT-TC
* * *
1896056 CAAGGCCACGACTTAGTGGCATTTCTTC
1 AAAGTCCACGACTCAGTGGCATTTCTTC
1896084 AAAGTCCACGACTCAGTGGCATCCTTTTTCTTC
1 AAAGTCCACGACTCAGTGGCA-----TTTCTTC
* * *
1896117 CAAGTCCACGACTTAGTGGCATCTCTTC
1 AAAGTCCACGACTCAGTGGCATTTCTTC
* *
1896145 TAAGTCCACGACTCAGTGGCA--TCTATA
1 AAAGTCCACGACTCAGTGGCATTTCT-TC
* * *
1896172 AAAGTCCATGACTCAGTGGTATCTCTTC
1 AAAGTCCACGACTCAGTGGCATTTCTTC
* *
1896200 CAAGTCCATGACTCAGTGGCAT
1 AAAGTCCACGACTCAGTGGCAT
1896222 CCTTTTTCTT
Statistics
Matches: 231, Mismatches: 39, Indels: 34
0.76 0.13 0.11
Matches are distributed among these distances:
26 3 0.01
27 19 0.08
28 101 0.44
29 17 0.07
30 40 0.17
32 2 0.01
33 49 0.21
ACGTcount: A:0.24, C:0.28, G:0.17, T:0.31
Consensus pattern (28 bp):
AAAGTCCACGACTCAGTGGCATTTCTTC
Found at i:1896039 original size:91 final size:91
Alignment explanation
Indices: 1895928--1896253 Score: 373
Period size: 91 Copynumber: 3.6 Consensus size: 91
1895918 CTAAGTGGCA
* ** * *
1895928 TTTCTTCAAAGTCCGTGACTCAGTGGCATCTTTTCTCCAAGTCCACAACTCAATGGCATTTCTTT
1 TTTCTTCCAAGTCCACGACTCAGTGGCATCTTTTCTCCAAGTCCACAACTCAGTGGCATTTCTTA
1895993 AAAGTCCATGACTCAGTGGCATTCAT
66 AAAGTCCATGACTCAGTGGCATTCAT
* * * * *
1896019 TTTCTTCTAAGTCCACGACTCAGTGGCATCTTTTCTCCAAGGCCACGACTTAGTGGCATTTCTTC
1 TTTCTTCCAAGTCCACGACTCAGTGGCATCTTTTCTCCAAGTCCACAACTCAGTGGCATTTCTTA
* * *
1896084 AAAGTCCACGACTCAGTGGCATCCTT
66 AAAGTCCATGACTCAGTGGCATTCAT
* * *
1896110 TTTCTTCCAAGTCCACGACTTAGTGGCATCTCTTCT--AAGTCCACGACTCAGTGGCA--TCTAT
1 TTTCTTCCAAGTCCACGACTCAGTGGCATCTTTTCTCCAAGTCCACAACTCAGTGGCATTTCT-T
1896171 AAAAGTCCATGACTCAGTGG---T-A-
65 AAAAGTCCATGACTCAGTGGCATTCAT
* * * *
1896193 TCTCTTCCAAGTCCATGACTCAGTGGCATCCTTTTTCTTCCGAGTCCACAACTCCGTGGCA
1 TTTCTTCCAAGTCCACGACTCAGTGGCAT-C-TTTTC-TCCAAGTCCACAACTCAGTGGCA
1896254 CCTTTTGAAG
Statistics
Matches: 202, Mismatches: 27, Indels: 15
0.83 0.11 0.06
Matches are distributed among these distances:
83 26 0.13
84 1 0.00
85 4 0.02
86 1 0.00
87 3 0.01
88 36 0.18
89 18 0.09
91 113 0.56
ACGTcount: A:0.22, C:0.29, G:0.17, T:0.32
Consensus pattern (91 bp):
TTTCTTCCAAGTCCACGACTCAGTGGCATCTTTTCTCCAAGTCCACAACTCAGTGGCATTTCTTA
AAAGTCCATGACTCAGTGGCATTCAT
Found at i:1896126 original size:61 final size:59
Alignment explanation
Indices: 1895908--1896286 Score: 271
Period size: 61 Copynumber: 6.4 Consensus size: 59
1895898 CCTTTCCTAA
* * * ** * *
1895908 AAGTCCACTACTAAGTGGCA---TTTCTTCAAAGTCCGTGACTCAGTGGCATCTTTTCT
1 AAGTCCACGACTCAGTGGCATCTTTTCTTCCAAGTCCACGACTTAGTGGCATCTCTTCT
* * ** * *
1895964 CCAAGTCCACAACTCAATGGCA---TTTCTTTAAAGTCCATGACTCAGTGGCATTCATTTTCTTC
1 --AAGTCCACGACTCAGTGGCATCTTTTCTTCCAAGTCCACGACTTAGTGGCA-TC----TCTTC
1896026 T
59 T
* * *
1896027 AAGTCCACGACTCAGTGGCATCTTTTC-TCCAAGGCCACGACTTAGTGGCATTTCTTCA
1 AAGTCCACGACTCAGTGGCATCTTTTCTTCCAAGTCCACGACTTAGTGGCATCTCTTCT
1896085 AAGTCCACGACTCAGTGGCATCCTTTTTCTTCCAAGTCCACGACTTAGTGGCATCTCTTCT
1 AAGTCCACGACTCAGTGGCAT-C-TTTTCTTCCAAGTCCACGACTTAGTGGCATCTCTTCT
* ** * * * *
1896146 AAGTCCACGACTCAGTGGCATC---T-ATAAAAGTCCATGACTCAGTGGTATCTCTTCC
1 AAGTCCACGACTCAGTGGCATCTTTTCTTCCAAGTCCACGACTTAGTGGCATCTCTTCT
* * * ** *
1896201 AAGTCCATGACTCAGTGGCATCCTTTTTCTTCCGAGTCCACAACTCCGTGGCA-C-CTTTT
1 AAGTCCACGACTCAGTGGCAT-C-TTTTCTTCCAAGTCCACGACTTAGTGGCATCTCTTCT
* * *
1896260 GAAGTCCACAACTCTGTGGCACCTTTT
1 -AAGTCCACGACTCAGTGGCATCTTTT
1896287 AAATCCCACA
Statistics
Matches: 263, Mismatches: 40, Indels: 36
0.78 0.12 0.11
Matches are distributed among these distances:
55 45 0.17
56 2 0.01
58 73 0.28
59 7 0.03
60 25 0.10
61 83 0.32
62 1 0.00
63 23 0.09
64 4 0.02
ACGTcount: A:0.23, C:0.29, G:0.17, T:0.32
Consensus pattern (59 bp):
AAGTCCACGACTCAGTGGCATCTTTTCTTCCAAGTCCACGACTTAGTGGCATCTCTTCT
Found at i:1896228 original size:116 final size:116
Alignment explanation
Indices: 1896021--1896289 Score: 317
Period size: 116 Copynumber: 2.3 Consensus size: 116
1896011 GCATTCATTT
* ** * *
1896021 TCTTCTAAGTCCACGACTCAGTGGCATCTTTTCTCCAAGGCCACGACTTAGTGGCATTTCTTCAA
1 TCTTCTAAGTCCACGACTCAGTGGCATC--TTATAAAAGGCCACGACTCAGTGGCATCTCTTCAA
* *
1896086 AGTCCACGACTCAGTGGCATCCTTTTTCTTCCAAGTCCACGACTTAGTGGCATC
64 AGTCCACGACTCAGTGGCATCCTTTTTCTTCCAAGTCCACAACTCAGTGGCA-C
* * * *
1896140 TCTTCTAAGTCCACGACTCAGTGGCATC-TATAAAAGTCCATGACTCAGTGGTATCTCTTCCAAG
1 TCTTCTAAGTCCACGACTCAGTGGCATCTTATAAAAGGCCACGACTCAGTGGCATCTCTTCAAAG
* * *
1896204 TCCATGACTCAGTGGCATCCTTTTTCTTCCGAGTCCACAACTCCGTGGCAC
66 TCCACGACTCAGTGGCATCCTTTTTCTTCCAAGTCCACAACTCAGTGGCAC
* * * * *
1896255 -CTTTTGAAGTCCACAACTCTGTGGCACCTTTTAAA
1 TCTTCT-AAGTCCACGACTCAGTGGCATCTTATAAA
1896290 TCCCACACAA
Statistics
Matches: 129, Mismatches: 19, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
114 4 0.03
115 20 0.16
116 77 0.60
119 28 0.22
ACGTcount: A:0.22, C:0.30, G:0.17, T:0.31
Consensus pattern (116 bp):
TCTTCTAAGTCCACGACTCAGTGGCATCTTATAAAAGGCCACGACTCAGTGGCATCTCTTCAAAG
TCCACGACTCAGTGGCATCCTTTTTCTTCCAAGTCCACAACTCAGTGGCAC
Found at i:1896273 original size:27 final size:27
Alignment explanation
Indices: 1896235--1896286 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
1896225 TTTTCTTCCG
1896235 AGTCCACAACTCCGTGGCACCTTTTGA
1 AGTCCACAACTCCGTGGCACCTTTTGA
*
1896262 AGTCCACAACTCTGTGGCACCTTTT
1 AGTCCACAACTCCGTGGCACCTTTT
1896287 AAATCCCACA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.21, C:0.33, G:0.17, T:0.29
Consensus pattern (27 bp):
AGTCCACAACTCCGTGGCACCTTTTGA
Found at i:1896296 original size:27 final size:27
Alignment explanation
Indices: 1896237--1896292 Score: 87
Period size: 27 Copynumber: 2.1 Consensus size: 27
1896227 TTCTTCCGAG
*
1896237 TCCACAACTCCGTGGCACCTTTTGAAG
1 TCCACAACTCCGTGGCACCTTTTGAAA
*
1896264 TCCACAACTCTGTGGCACCTTTT-AAA
1 TCCACAACTCCGTGGCACCTTTTGAAA
1896290 TCC
1 TCC
1896293 CACACAAGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 5 0.19
27 22 0.81
ACGTcount: A:0.23, C:0.34, G:0.14, T:0.29
Consensus pattern (27 bp):
TCCACAACTCCGTGGCACCTTTTGAAA
Found at i:1896403 original size:32 final size:31
Alignment explanation
Indices: 1896281--1896404 Score: 149
Period size: 32 Copynumber: 3.9 Consensus size: 31
1896271 CTCTGTGGCA
* * * *
1896281 CCTTTTAAATCCCACACAAGTTGGTTGCAAC
1 CCTTTCAAAGCCCACACAAGCTGGTGGCAAC
* * *
1896312 CCCTTCAAAGCCCATACAAGCTGGTGGAAAC
1 CCTTTCAAAGCCCACACAAGCTGGTGGCAAC
*
1896343 CCTTCTCAAAGCCCACATAAGCTGGTGGCAAC
1 CCTT-TCAAAGCCCACACAAGCTGGTGGCAAC
*
1896375 CCTTTCAAAAGCCCACACAAGTTGGTGGCA
1 CCTTTC-AAAGCCCACACAAGCTGGTGGCA
1896405 TCTATTTCTA
Statistics
Matches: 78, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
31 29 0.37
32 49 0.63
ACGTcount: A:0.30, C:0.31, G:0.18, T:0.21
Consensus pattern (31 bp):
CCTTTCAAAGCCCACACAAGCTGGTGGCAAC
Found at i:1896475 original size:43 final size:43
Alignment explanation
Indices: 1896418--1896500 Score: 121
Period size: 43 Copynumber: 1.9 Consensus size: 43
1896408 ATTTCTAATC
*
1896418 CCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGT
1 CCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGT
* * * *
1896461 CCAATATCGTTGGCCTTGAATTAGCATATTGGTACCTTTA
1 CCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTA
1896501 CCACCTTTAA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.33
Consensus pattern (43 bp):
CCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGT
Found at i:1896530 original size:52 final size:52
Alignment explanation
Indices: 1896450--1896651 Score: 242
Period size: 52 Copynumber: 3.9 Consensus size: 52
1896440 AGCACATTGG
* * * * *
1896450 CACCTTTAAGTCCAATATCGTTGGCCTTGAATTAGCATATTGGTACCTTTAC
1 CACCTTTAAGTCCAATATCGCTAGCCTTGAATCAGCACATTGGCACCTTTAC
* * * *
1896502 CACCTTTAAGTCCAATATCGCTATCCTTGAATTAGCATATTGGCACCTTCAC
1 CACCTTTAAGTCCAATATCGCTAGCCTTGAATCAGCACATTGGCACCTTTAC
* * * * *
1896554 CACCTTTATGTCCAATGTCACTGGCCTTGAATCAGCACATTGGCACCATTAC
1 CACCTTTAAGTCCAATATCGCTAGCCTTGAATCAGCACATTGGCACCTTTAC
* * * *
1896606 CATCTTTAAGTCCAATGTCCCTAGCTTTGAATCAGCACATTGGCAC
1 CACCTTTAAGTCCAATATCGCTAGCCTTGAATCAGCACATTGGCAC
1896652 AAGCCCAATA
Statistics
Matches: 131, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
52 131 1.00
ACGTcount: A:0.26, C:0.28, G:0.14, T:0.32
Consensus pattern (52 bp):
CACCTTTAAGTCCAATATCGCTAGCCTTGAATCAGCACATTGGCACCTTTAC
Found at i:1896636 original size:104 final size:104
Alignment explanation
Indices: 1896450--1896651 Score: 269
Period size: 104 Copynumber: 1.9 Consensus size: 104
1896440 AGCACATTGG
** * * * *
1896450 CACCTTTAAGTCCAATATCGTTGGCCTTGAATTAGCATATTGGTACCTTTACCACCTTTAAGTCC
1 CACCTTTAAGTCCAATATCACTGGCCTTGAATCAGCACATTGGCACCATTACCACCTTTAAGTCC
* * * *
1896515 AATATCGCTATCCTTGAATTAGCATATTGGCACCTTCAC
66 AATATCCCTAGCCTTGAATCAGCACATTGGCACCTTCAC
* * *
1896554 CACCTTTATGTCCAATGTCACTGGCCTTGAATCAGCACATTGGCACCATTACCATCTTTAAGTCC
1 CACCTTTAAGTCCAATATCACTGGCCTTGAATCAGCACATTGGCACCATTACCACCTTTAAGTCC
* *
1896619 AATGTCCCTAGCTTTGAATCAGCACATTGGCAC
66 AATATCCCTAGCCTTGAATCAGCACATTGGCAC
1896652 AAGCCCAATA
Statistics
Matches: 83, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
104 83 1.00
ACGTcount: A:0.26, C:0.28, G:0.14, T:0.32
Consensus pattern (104 bp):
CACCTTTAAGTCCAATATCACTGGCCTTGAATCAGCACATTGGCACCATTACCACCTTTAAGTCC
AATATCCCTAGCCTTGAATCAGCACATTGGCACCTTCAC
Found at i:1896728 original size:91 final size:91
Alignment explanation
Indices: 1896565--1896829 Score: 296
Period size: 91 Copynumber: 2.9 Consensus size: 91
1896555 ACCTTTATGT
* * * * * * * * * *
1896565 CCAATGTCACTGGCCTTGAATCAGCACATTGGCACCATTACCATCTTTAAGTCCAATGTCCCTAG
1 CCAATATCACTAGCCTTAAATCAGCATATTGGCACCCTTATCATCTTTAAGACCAATATCGCTAC
*
1896630 CTTTGAATCAGCACATTGGCACAAGC
66 CCTTGAATCAGCACATTGGCACAAGC
** * * * * * **
1896656 CCAATATTGCTGGCCTTAAATTAGCATATTGTCACCCTTGTCATCTTTAAGACCAATATCGTTGG
1 CCAATATCACTAGCCTTAAATCAGCATATTGGCACCCTTATCATCTTTAAGACCAATATCGCTAC
1896721 CCTTGAATCAGCACATTGGCACAAGC
66 CCTTGAATCAGCACATTGGCACAAGC
* * * * * *
1896747 CCAATATCACTAGCCTTGAATCAGTATATTGGCACCTTTATCATTTTTAAGTCCAATGTCGCTAC
1 CCAATATCACTAGCCTTAAATCAGCATATTGGCACCCTTATCATCTTTAAGACCAATATCGCTAC
1896812 CCTTGAATCAGCACATTG
66 CCTTGAATCAGCACATTG
1896830 ACACTTGCTT
Statistics
Matches: 143, Mismatches: 31, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
91 143 1.00
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.30
Consensus pattern (91 bp):
CCAATATCACTAGCCTTAAATCAGCATATTGGCACCCTTATCATCTTTAAGACCAATATCGCTAC
CCTTGAATCAGCACATTGGCACAAGC
Found at i:1896903 original size:52 final size:52
Alignment explanation
Indices: 1896747--1896989 Score: 249
Period size: 52 Copynumber: 4.7 Consensus size: 52
1896737 TGGCACAAGC
* * * *
1896747 CCAATATCACTAGCCTTGAATCAGTATATTGGCACCTTTATCATTTTTAAGT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCATCTTTAAGT
* ** * * * *
1896799 CCAATGTCGCTACCCTTGAATCAGCACATTGACACTTGCTTT-T-TTC-TCAAGT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCAC---CTTTATCATCTTTAAGT
* * *
1896851 CTAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTTAACATCTTTAAGT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCATCTTTAAGT
* * * *
1896903 CTAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTCTTTAAGC
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCATCTTTAAGT
** *
1896955 CCAATATCATTGGCCTTGAATTAGCATATTGGCAC
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCAC
1896990 TAGTCCAATA
Statistics
Matches: 156, Mismatches: 29, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
49 4 0.03
51 2 0.01
52 144 0.92
53 1 0.01
54 1 0.01
55 4 0.03
ACGTcount: A:0.26, C:0.24, G:0.15, T:0.36
Consensus pattern (52 bp):
CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCATCTTTAAGT
Found at i:1896961 original size:104 final size:102
Alignment explanation
Indices: 1896742--1896989 Score: 300
Period size: 104 Copynumber: 2.4 Consensus size: 102
1896732 CACATTGGCA
* * * *
1896742 CAAGCCCAATATCACTAGCCTTGAATCAGTATATTGGCACCTTTATCATTTTTAAGTCCAATGTC
1 CAAGCCCAATATCACTGGCCTTGAATCAGCATATTGGCACCTTTAACATCTTTAAGTCCAATGTC
1896807 GCTACCCTTGAATCAGCACATTGACACTTGCTTTTTTCT
66 GCTACCCTTGAATCAGCACATTGACAC-T-CTTTTTTCT
* * ** *
1896846 CAAGTCTAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTTAACATCTTTAAGTCTAATGTC
1 CAAGCCCAATATCACTGGCCTTGAATCAGCATATTGGCACCTTTAACATCTTTAAGTCCAATGTC
** * *
1896911 GCTGGCCTTGAATCAGCATATTGGCAC-CTTTATCTTCTT
66 GCTACCCTTGAATCAGCACATTGACACTCTTT-T-TTC-T
* * *
1896950 TAAGCCCAATATCATTGGCCTTGAATTAGCATATTGGCAC
1 CAAGCCCAATATCACTGGCCTTGAATCAGCATATTGGCAC
1896990 TAGTCCAATA
Statistics
Matches: 121, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
101 4 0.03
102 1 0.01
103 3 0.02
104 113 0.93
ACGTcount: A:0.26, C:0.24, G:0.15, T:0.35
Consensus pattern (102 bp):
CAAGCCCAATATCACTGGCCTTGAATCAGCATATTGGCACCTTTAACATCTTTAAGTCCAATGTC
GCTACCCTTGAATCAGCACATTGACACTCTTTTTTCT
Found at i:1897136 original size:61 final size:60
Alignment explanation
Indices: 1896994--1897159 Score: 165
Period size: 61 Copynumber: 2.7 Consensus size: 60
1896984 TGGCACTAGT
* * * *
1896994 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCCTTATCATTCTTCTCATCTTTAAGC
1 CCAATATCACT-GCCTTGAATCAGCATATTGGCACCTTTATCATTCTTCGCATCCTTAAGC
* * ** **
1897055 TCGATATTGCTGGTTGTGAATCAGCATATTGGCACCTTTATCATTCTTCGCATCCTTAAGC
1 CCAATATCACTGCCT-TGAATCAGCATATTGGCACCTTTATCATTCTTCGCATCCTTAAGC
* *
1897116 CCAATGTCACTGACCTTGAATCAACACT-TTGGCACTCTTT-TCAT
1 CCAATATCACTG-CCTTGAATCAGCA-TATTGGCAC-CTTTATCAT
1897160 CTTTATCATC
Statistics
Matches: 85, Mismatches: 16, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
60 2 0.02
61 77 0.91
62 6 0.07
ACGTcount: A:0.23, C:0.27, G:0.14, T:0.36
Consensus pattern (60 bp):
CCAATATCACTGCCTTGAATCAGCATATTGGCACCTTTATCATTCTTCGCATCCTTAAGC
Found at i:1898830 original size:20 final size:21
Alignment explanation
Indices: 1898786--1898831 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
1898776 TGTTAATAGC
1898786 CTATG-TTCATGCATTTTGAG
1 CTATGTTTCATGCATTTTGAG
*
1898806 CTATGTTTCATGCATTTTTAG
1 CTATGTTTCATGCATTTTGAG
1898827 -TATGT
1 CTATGT
1898832 CCAACACCTC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 10 0.42
21 14 0.58
ACGTcount: A:0.20, C:0.13, G:0.17, T:0.50
Consensus pattern (21 bp):
CTATGTTTCATGCATTTTGAG
Found at i:1900104 original size:27 final size:27
Alignment explanation
Indices: 1900074--1900129 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
1900064 ATACCAAATT
1900074 TTATT-CATAGGGGATACTCCAACCCCA
1 TTATTCCA-AGGGGATACTCCAACCCCA
* * *
1900101 TTATTCCAATGGGATACTCCTACCTCA
1 TTATTCCAAGGGGATACTCCAACCCCA
1900128 TT
1 TT
1900130 TTTGAACTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 23 0.92
28 2 0.08
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.32
Consensus pattern (27 bp):
TTATTCCAAGGGGATACTCCAACCCCA
Found at i:1901281 original size:65 final size:65
Alignment explanation
Indices: 1901177--1901769 Score: 544
Period size: 65 Copynumber: 9.1 Consensus size: 65
1901167 CTTGTATAGG
* * ** * * *
1901177 TTTTTGAGTGCCGTCAACTCGTGCAAGCTTTCGGAAAGGTTTAAGAGCCACCAACTTGTGTGAGC
1 TTTTTGGGTGCCGCCAACTCGTGCGGGCTTTTGGAAAGGTTTGAGTGCCACCAACTTGTGTGAGC
* ** * *
1901242 TTTTTGGGTGCCGCTAACTCGTGTAGGCTTTTAGAAAGGTTTGAGTGCCACCAACTTGTGTGGGC
1 TTTTTGGGTGCCGCCAACTCGTGCGGGCTTTTGGAAAGGTTTGAGTGCCACCAACTTGTGTGAGC
* * ** * *
1901307 TTTTTGGGTGTCGCTAACTCGTGTAGGCTTTTAGAAAGGTTTGAGTGCCACCAATTTGTGTG-GA
1 TTTTTGGGTGCCGCCAACTCGTGCGGGCTTTTGGAAAGGTTTGAGTGCCACCAACTTGTGTGAG-
*
1901371 A
65 C
* * * ** * * *
1901372 TTTTTGGGTGCCACCAACTCATACGGGCTTTTAAAAAGGTTTGAGTGGCACCAACTTATGTGGGC
1 TTTTTGGGTGCCGCCAACTCGTGCGGGCTTTTGGAAAGGTTTGAGTGCCACCAACTTGTGTGAGC
* * * ** * * *
1901437 ATTCTAGGTGCTACCAACTCATGTGGGCTTTTGGAAAGGTTTGAGTGCCACCAACTTGTGTAAGC
1 TTTTTGGGTGCCGCCAACTCGTGCGGGCTTTTGGAAAGGTTTGAGTGCCACCAACTTGTGTGAGC
* ** * * *
1901502 TTTCTAAGTGCCGCCAACTCATGCGGGCTTTTGGAAAAGTTTGAGTGCCACCAACTTGTGTAAGC
1 TTTTTGGGTGCCGCCAACTCGTGCGGGCTTTTGGAAAGGTTTGAGTGCCACCAACTTGTGTGAGC
* * ** * *
1901567 TTTCTAGGCACTGCCAACTCGTGCGGGCTTTTGGAAAGGTTTGAGTGCCACCAACTTGTAT-AGG
1 TTTTTGGGTGCCGCCAACTCGTGCGGGCTTTTGGAAAGGTTTGAGTGCCACCAACTTGTGTGA-G
1901631 C
65 C
** * * *
1901632 TTTTTGGGTGTTGCCAACTCGTGTGGACTTTTGGAAAGGTTTGAATGCCACCAACTTGTGT-AGG
1 TTTTTGGGTGCCGCCAACTCGTGCGGGCTTTTGGAAAGGTTTGAGTGCCACCAACTTGTGTGA-G
*
1901696 T
65 C
** * *** ** * * * *
1901697 TTTTTGGGTGCAACCAACTTGTGTAAGAATTTGGAAGGGTTTGAGTGCTAGCAACTTTGTGTGGG
1 TTTTTGGGTGCCGCCAACTCGTGCGGGCTTTTGGAAAGGTTTGAGTGCCACCAAC-TTGTGTGAG
1901762 C
65 C
1901763 TTTTTGG
1 TTTTTGG
1901770 ATTACTCTAC
Statistics
Matches: 448, Mismatches: 75, Indels: 9
0.84 0.14 0.02
Matches are distributed among these distances:
64 2 0.00
65 431 0.96
66 15 0.03
ACGTcount: A:0.21, C:0.18, G:0.28, T:0.33
Consensus pattern (65 bp):
TTTTTGGGTGCCGCCAACTCGTGCGGGCTTTTGGAAAGGTTTGAGTGCCACCAACTTGTGTGAGC
Found at i:1901308 original size:37 final size:37
Alignment explanation
Indices: 1901257--1901360 Score: 100
Period size: 37 Copynumber: 3.1 Consensus size: 37
1901247 GGGTGCCGCT
1901257 AACTCGTGTAGGCTTTTAGAAAGGTTTGAGTGCCACC
1 AACTCGTGTAGGCTTTTAGAAAGGTTTGAGTGCCACC
* * * * *
1901294 AACTTGTGTGGGCTTTTTG---GG--T--GT--CGCT
1 AACTCGTGTAGGCTTTTAGAAAGGTTTGAGTGCCACC
1901322 AACTCGTGTAGGCTTTTAGAAAGGTTTGAGTGCCACC
1 AACTCGTGTAGGCTTTTAGAAAGGTTTGAGTGCCACC
1901359 AA
1 AA
1901361 TTTGTGTGGA
Statistics
Matches: 48, Mismatches: 10, Indels: 18
0.63 0.13 0.24
Matches are distributed among these distances:
28 18 0.38
30 2 0.04
31 2 0.04
32 1 0.02
33 1 0.02
34 2 0.04
35 2 0.04
37 20 0.42
ACGTcount: A:0.21, C:0.17, G:0.29, T:0.33
Consensus pattern (37 bp):
AACTCGTGTAGGCTTTTAGAAAGGTTTGAGTGCCACC
Found at i:1901972 original size:29 final size:29
Alignment explanation
Indices: 1901926--1902296 Score: 246
Period size: 29 Copynumber: 12.6 Consensus size: 29
1901916 TAATGACTAA
* *
1901926 TGGGCTTT-AAAAGGGTGCCACTGACTTA
1 TGGGCTTTGAAAAGGGTGCCACTAACTTG
* * * *
1901954 TGGGATTTGAAAAGGGTGCCATTGACTTA
1 TGGGCTTTGAAAAGGGTGCCACTAACTTG
* * * *
1901983 TGGGCTTTGAAAAAGTTACCACCAACTCGTG
1 TGGGCTTTGAAAAGGGTGCCACTAACT--TG
* * * * *
1902014 TGGACTTTAAAAATGATGCCACTAACTAG
1 TGGGCTTTGAAAAGGGTGCCACTAACTTG
* * *
1902043 TGGGCTTTAAAAAGGTTGCCACCAACTCGTG
1 TGGGCTTTGAAAAGGGTGCCACTAACT--TG
* * * * * *
1902074 TGGACTTTAAAAACGGTAG-TATTGACTTG
1 TGGGCTTTGAAAAGGGT-GCCACTAACTTG
* * * *
1902103 TGGGTTTTAAAAAGGTTGCCACCAACTCATG
1 TGGGCTTTGAAAAGGGTGCCACTAACT--TG
* * *
1902134 TGGACTTT-AAAAGGGACGCTACTAACTTG
1 TGGGCTTTGAAAAGGG-TGCCACTAACTTG
*
1902163 TGGGCTTTGAAAAGGGTGCTACTAACTTG
1 TGGGCTTTGAAAAGGGTGCCACTAACTTG
* * * *
1902192 TTGGTTTTGAAAAAGGTGCCACTGACTTG
1 TGGGCTTTGAAAAGGGTGCCACTAACTTG
* * *
1902221 TGGGCTTTGAGAAGGGTGCCGCTGACTTG
1 TGGGCTTTGAAAAGGGTGCCACTAACTTG
**
1902250 TGGGCTTTGAAGAA-AATGCCACTAACTTG
1 TGGGCTTTGAA-AAGGGTGCCACTAACTTG
* *
1902279 TGGGCTTTAAAAAAGGTG
1 TGGGCTTTGAAAAGGGTG
1902297 TCATTGACTT
Statistics
Matches: 267, Mismatches: 63, Indels: 25
0.75 0.18 0.07
Matches are distributed among these distances:
28 10 0.04
29 184 0.69
30 15 0.06
31 57 0.21
32 1 0.00
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (29 bp):
TGGGCTTTGAAAAGGGTGCCACTAACTTG
Found at i:1902065 original size:60 final size:59
Alignment explanation
Indices: 1901978--1902291 Score: 264
Period size: 60 Copynumber: 5.3 Consensus size: 59
1901968 GGTGCCATTG
* *
1901978 ACTTATGGGCTTTGAAAAA-GTTACCACCAACTCGTGTGGACTTTAAAAATGATGCCACTA
1 ACTTGTGGGCTTT-AAAAAGGTTGCCACCAACTCGTGTGGACTTTAAAAA-GATGCCACTA
* * * * *
1902038 ACTAGTGGGCTTTAAAAAGGTTGCCACCAACTCGTGTGGACTTTAAAAACGGTAG-TATTG
1 ACTTGTGGGCTTTAAAAAGGTTGCCACCAACTCGTGTGGACTTTAAAAA-GAT-GCCACTA
* * * * *
1902098 ACTTGTGGGTTTTAAAAAGGTTGCCACCAACTCATGTGGACTTTAAAAGGGACGCTACTA
1 ACTTGTGGGCTTTAAAAAGGTTGCCACCAACTCGTGTGGACTTTAAAA-AGATGCCACTA
* * * * * * * *
1902158 ACTTGTGGGCTTTGAAAAGGGTGCTACTAACTTGT-TGG-TTTTGAAAAAGGTGCCACTG
1 ACTTGTGGGCTTTAAAAAGGTTGCCACCAACTCGTGTGGACTTT-AAAAAGATGCCACTA
* * * * ** *
1902216 ACTTGTGGGCTTTGAGAAGGGTGCCGCTGACT--TGTGGGCTTTGAAGAAA-ATGCCACTA
1 ACTTGTGGGCTTTAAAAAGGTTGCCACCAACTCGTGTGGACTTT-AA-AAAGATGCCACTA
1902274 ACTTGTGGGCTTTAAAAA
1 ACTTGTGGGCTTTAAAAA
1902292 AGGTGTCATT
Statistics
Matches: 208, Mismatches: 38, Indels: 18
0.79 0.14 0.07
Matches are distributed among these distances:
56 1 0.00
57 3 0.01
58 66 0.32
59 16 0.08
60 121 0.58
61 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.29
Consensus pattern (59 bp):
ACTTGTGGGCTTTAAAAAGGTTGCCACCAACTCGTGTGGACTTTAAAAAGATGCCACTA
Found at i:1902085 original size:31 final size:31
Alignment explanation
Indices: 1901987--1902145 Score: 141
Period size: 31 Copynumber: 5.3 Consensus size: 31
1901977 GACTTATGGG
*
1901987 CTTTGAAAAA-GTTACCACCAACTCGTGTGGA
1 CTTT-AAAAAGGTTGCCACCAACTCGTGTGGA
* * * *
1902018 CTTTAAAAATGATGCCACTAACTAGTG-GG-
1 CTTTAAAAAGGTTGCCACCAACTCGTGTGGA
1902047 CTTTAAAAAGGTTGCCACCAACTCGTGTGGA
1 CTTTAAAAAGGTTGCCACCAACTCGTGTGGA
* * *** *
1902078 CTTTAAAAACGGTAG-TATTGACT--TGTGGG
1 CTTTAAAAA-GGTTGCCACCAACTCGTGTGGA
* *
1902107 TTTTAAAAAGGTTGCCACCAACTCATGTGGA
1 CTTTAAAAAGGTTGCCACCAACTCGTGTGGA
1902138 CTTTAAAA
1 CTTTAAAA
1902146 GGGACGCTAC
Statistics
Matches: 99, Mismatches: 22, Indels: 14
0.73 0.16 0.10
Matches are distributed among these distances:
28 4 0.04
29 40 0.40
30 9 0.09
31 42 0.42
32 4 0.04
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (31 bp):
CTTTAAAAAGGTTGCCACCAACTCGTGTGGA
Found at i:1902257 original size:87 final size:87
Alignment explanation
Indices: 1902158--1902322 Score: 224
Period size: 87 Copynumber: 1.9 Consensus size: 87
1902148 GACGCTACTA
** * * * * *
1902158 ACTTGTGGGCTTTGAA-AAGGGTGCTACTAACTTGTTGGTTTTGAAAAAGGTGCCACTGACTTGT
1 ACTTGTGGGCTTTGAAGAA-AATGCCACTAACTTGTGGGCTTTAAAAAAGGTGCCACTGACTTAT
1902222 GGGCTTTGAGAAGGGTGCCGCTG
65 GGGCTTTGAGAAGGGTGCCGCTG
* *
1902245 ACTTGTGGGCTTTGAAGAAAATGCCACTAACTTGTGGGCTTTAAAAAAGGTGTCATTGACTTATG
1 ACTTGTGGGCTTTGAAGAAAATGCCACTAACTTGTGGGCTTTAAAAAAGGTGCCACTGACTTATG
*
1902310 GGTTTTGAGAAGG
66 GGCTTTGAGAAGG
1902323 ATGGTTGCCA
Statistics
Matches: 67, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
87 65 0.97
88 2 0.03
ACGTcount: A:0.24, C:0.13, G:0.31, T:0.32
Consensus pattern (87 bp):
ACTTGTGGGCTTTGAAGAAAATGCCACTAACTTGTGGGCTTTAAAAAAGGTGCCACTGACTTATG
GGCTTTGAGAAGGGTGCCGCTG
Found at i:1902305 original size:58 final size:57
Alignment explanation
Indices: 1902154--1902317 Score: 186
Period size: 58 Copynumber: 2.8 Consensus size: 57
1902144 AAGGGACGCT
* * *
1902154 ACTAACTTGTGGGCTTTGAAAAGGGTGCTACTAACTTGTTGGTTTTGAAAAAGGTGCC
1 ACTAACTTGTGGGCTTTGAAAAGGGTGC-ACTGACTTGTGGGTTTTGAAAAAGATGCC
* * * *
1902212 ACTGACTTGTGGGCTTTGAGAAGGGTGCCGCTGACTTGTGGGCTTTGAAGAAA-ATGCC
1 ACTAACTTGTGGGCTTTGAAAAGGGTG-CACTGACTTGTGGGTTTTGAA-AAAGATGCC
* * * *
1902270 ACTAACTTGTGGGCTTTAAAAAAGGTGTCATTGACTTATGGGTTTTGA
1 ACTAACTTGTGGGCTTTGAAAAGGGTG-CACTGACTTGTGGGTTTTGA
1902318 GAAGGATGGT
Statistics
Matches: 88, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
58 84 0.95
59 4 0.05
ACGTcount: A:0.24, C:0.14, G:0.29, T:0.32
Consensus pattern (57 bp):
ACTAACTTGTGGGCTTTGAAAAGGGTGCACTGACTTGTGGGTTTTGAAAAAGATGCC
Found at i:1905068 original size:31 final size:31
Alignment explanation
Indices: 1904992--1905068 Score: 136
Period size: 31 Copynumber: 2.5 Consensus size: 31
1904982 TCGATACAAA
* *
1904992 GTTCTATCTTAGCCGGTGAAAAGATAGGGAG
1 GTTCTATCTTAGCCTGTGAAAAAATAGGGAG
1905023 GTTCTATCTTAGCCTGTGAAAAAATAGGGAG
1 GTTCTATCTTAGCCTGTGAAAAAATAGGGAG
1905054 GTTCTATCTTAGCCT
1 GTTCTATCTTAGCCT
1905069 TCAAAAGATA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (31 bp):
GTTCTATCTTAGCCTGTGAAAAAATAGGGAG
Found at i:1907252 original size:28 final size:28
Alignment explanation
Indices: 1907221--1907275 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
1907211 CTAAAAAACT
1907221 TTCTCCCCTTTTTGTTATAAAAAAAAAA
1 TTCTCCCCTTTTTGTTATAAAAAAAAAA
*
1907249 TTCTCCCTTTTTTGTTATAAAAAAAAA
1 TTCTCCCCTTTTTGTTATAAAAAAAAA
1907276 CTTTCTTTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.38, C:0.16, G:0.04, T:0.42
Consensus pattern (28 bp):
TTCTCCCCTTTTTGTTATAAAAAAAAAA
Found at i:1912012 original size:476 final size:475
Alignment explanation
Indices: 1910635--1916026 Score: 6962
Period size: 476 Copynumber: 11.4 Consensus size: 475
1910625 TTCGACATAG
* * *
1910635 TCTATCCTAATGAGAGGACTATGTTTATGGTGCCAAATCCTA-AAAAGAATGAGGATTAGTATAA
1 TCTATCCTAATGAGAAGACTATGTTTATGGTGCCAAAT-CTAGAAAAGAATGGGGATTAGTATGA
* * * * *
1910699 GTATTCATGTTTGT-TGTAAATAAGAGACAAATTTTGATTCTATCAAAAATGGTGGAAGGAAAAC
65 CTATTCATGTTTGTCT-TAATTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAGGAAAAC
*
1910763 CTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAACGAAGGAAATGTGTTTTT-GTTCC
129 CTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAACGAAGGAAATGTGTTTTTGGTTCC
*
1910827 CAATCTTGAAAA-AATGGAGATTATTAAAAGAATCAATGCTTGCCTTATTTATGGGATGAACTAC
194 CAATCTTGAAAAGAATGGAGATTATTAAGAGAATCAATGCTTGCCTTATTTATGGGATGAACTAC
* *
1910891 GATTTTAAGGAAAATAGGGTAAAGAAAAGATTTTCATGCAAAAGAAAACAATCAATATCATTTAT
259 GATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTAT
* *
1910956 CCTAATGAGGAAAATGTGTTTATAGTGCCTAATCACCGAATGAATGAAGATTATTACTTGAATCC
324 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACCAAATGAATGAAGATTATTACTTGAATCC
* * *
1911021 ATATTTGTCTCAATTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAGGAAAGCCTTTCTT
389 ATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGA-AAAAGCCTTTCTT
** * * *
1911086 ATGAAACTAAA-AAGTCAATATCA
453 GCGAAACCAAAGCA-TCAATTTCA
* * * **
1911109 TGTATCCTTATGAGAAGACTAAGTTTATGGTGCGTAATCCT-GAAAAGAATGGGGATTAGTATGA
1 TCTATCCTAATGAGAAGACTATGTTTATGGTGCCAAAT-CTAGAAAAGAATGGGGATTAGTATGA
* * **
1911173 CTTTTCATGTTTGTCTTAATTAAGAGACAAACTTTCATTCTATCAAAAACGGAGGAAGGAAAACC
65 CTATTCATGTTTGTCTTAATTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAGGAAAACC
* *
1911238 TTTTCTTGCGACACCAAGGCATCAATGTCATGTATCCTAACGAAGGGAATGTGTTTTT-GTTCCC
130 TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAACGAAGGAAATGTGTTTTTGGTTCCC
* * *
1911302 AATCTTGAAAA-AATGAAGGTTATTAAGAGAATCAATGCTTGCCTTATTTATAGGATGAACTACG
195 AATCTTGAAAAGAATGGAGATTATTAAGAGAATCAATGCTTGCCTTATTTATGGGATGAACTACG
* * * *
1911366 ATTTTAAGGAAAATAGGGCAAAGAAAAAAATTTCATGCAAAAGAAAACCATCTATATCATTTCTC
260 ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATC
* * * * ** ** *
1911431 CAAATGAGGAGAATGTGTTTATAGTCCCCAATTATAAAATGAATGAAGATCGTTACTGGAATCCA
325 CTAATGAGGAGAATGTGTTTATAGTGCCTAATCACCAAATGAATGAAGATTATTACTTGAATCCA
* * * ** *
1911496 TATTTGTCTTATTTGAGGTACGAACTTAGACTTTACAAAAATTTATGGGAAAAGAGTCTTTCTTG
390 TGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAA-AGCCTTTCTTG
* **
1911561 CGAATCCAAAGCATCAATTTTT
454 CGAAACCAAAGCATCAATTTCA
* * *
1911583 TCTGTCCTAATGAGAAGACTACGTTTATGGTGCCAAATCAAGAAAAGAATGGGGATTAGTATGAC
1 TCTATCCTAATGAGAAGACTATGTTTATGGTGCCAAATCTAGAAAAGAATGGGGATTAGTATGAC
* * *
1911648 TATTCATGTTTGTCTTATTTAAGGGACAAACTTTGATTCTATCAAAAACGGTTGAAGGAAAACCA
66 TATTCATGTTTGTCTTAATTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAGGAAAACCT
* *
1911713 TTTCTTGTGACACCAAAGCGTCAATGTCATGTATCCTAACGAAGGAAATGTGTTTTTGGTTCCCA
131 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAACGAAGGAAATGTGTTTTTGGTTCCCA
* ** * * *
1911778 ATCCTGAAAAGAATGGAGGCTATTAAGATAATCAATGCTTGCCTTATTTAAGGGATGAACTTCGA
196 ATCTTGAAAAGAATGGAGATTATTAAGAGAATCAATGCTTGCCTTATTTATGGGATGAACTACGA
1911843 TTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATCC
261 TTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATCC
* * **
1911908 TAAAGAGGAGAATGTGTTTATAGTGCGTAATCACCAAATGAATGAAGATTATTACTTGAAAT-TG
326 TAATGAGGAGAATGTGTTTATAGTGCCTAATCACCAAATGAATGAAGATTATTACTTG-AATCCA
* * * * *
1911972 TGTTTGTCTTATTTGAGGCATGCACTTAAACTTTACAAAAATTGGTGGAAAGAAAGCCTTTCTTG
390 TGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAA-AAAGCCTTTCTTG
1912037 CGAAACCAAAGCATCAATTT-A
454 CGAAACCAAAGCATCAATTTCA
* * * * * * *
1912058 GTCTATCCTAACGAGAGGACTATGTTTATGGTGCTAAATCCTA-AAACGAATGGGCATTAGCATA
1 -TCTATCCTAATGAGAAGACTATGTTTATGGTGCCAAAT-CTAGAAAAGAATGGGGATTAGTATG
* * * *
1912122 AGTATTCATGTTTGT-TGTAAATAAGAGACAAAATTTGATTCTATCAAAAACGGTGGAAGGAAAA
64 ACTATTCATGTTTGTCT-TAATTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAGGAAAA
* *
1912186 CCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAACGAAGGGAATGTGTTTTT-GTTC
128 CCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAACGAAGGAAATGTGTTTTTGGTTC
*
1912250 CCAATCTTGAAAA-AATAGAGATTATTAAGAGAATCAATGCTTGCCTTATTTATGGGATGAACTA
193 CCAATCTTGAAAAGAATGGAGATTATTAAGAGAATCAATGCTTGCCTTATTTATGGGATGAACTA
* * * *
1912314 CGATTTTAAGGAAAATTGGGTAAAGAAAAGATTTTCATGTAAAAGAAAACAATCAATATCATTTA
258 CGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTA
* * *
1912379 TCTTAATGAGGAAAATGTGTTTATAGTGCCTAATCACCGAATGAATGAAGATTATTACTTGAATC
323 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACCAAATGAATGAAGATTATTACTTGAATC
* *
1912444 CATGTTTGTCTCAATTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAGGAAAGCCTTTCT
388 CATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGA-AAAAGCCTTTCT
** * *
1912509 TATGAAACTAAAG-AGTCAATATCA
452 TGCGAAACCAAAGCA-TCAATTTCA
* * * * **
1912533 TGTATCCTTATGAGAAGACTAAGTTTCTGGTGCGTAATCCT-GAAAAGAATGGGGATTAGTATGA
1 TCTATCCTAATGAGAAGACTATGTTTATGGTGCCAAAT-CTAGAAAAGAATGGGGATTAGTATGA
* *
1912597 CTTTTCATGTTTGTCTTAATTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAACC
65 CTATTCATGTTTGTCTTAATTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAGGAAAACC
* * *
1912662 TTTTCTTGCGACACCAAGGCATCAATGTCATGTATCCTAACGAAGGGAATGTGTTTTT-TTTCCC
130 TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAACGAAGGAAATGTGTTTTTGGTTCCC
* * * * * *
1912726 AATCTTGAAAA-AATGAAGGTTATCAAGAGAATCAATGCTTGCCTTA-TTATTGGACGAACTACA
195 AATCTTGAAAAGAATGGAGATTATTAAGAGAATCAATGCTTGCCTTATTTATGGGATGAACTACG
* * * * *
1912789 ATTTTAAGGAAAATAGGGTAAAGAAAAGATTTTCATGTAAAAGAAAACAATGAATTTCATTTATC
260 ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATC
* ** *
1912854 CTAATGAGGAAAATGTGTTTATAGTGCCTAATCACTGAATGAATAAAGATTATTACTTGAATCCA
325 CTAATGAGGAGAATGTGTTTATAGTGCCTAATCACCAAATGAATGAAGATTATTACTTGAATCCA
* * * * *
1912919 TTTTTGTCTCAATTGAGGTATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTA
390 TGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAA-AAAGCCTTTCTTG
* * *
1912984 TGAAAACTATAA--AGTCAATATCA
454 CG-AAACCA-AAGCA-TCAATTTCA
* * * *** *
1913007 TGTATCCTTATGAGAAGACTAAGTTTATGGTGTGTAATCCT-TAAAAGAATGGGGATTAGTATGA
1 TCTATCCTAATGAGAAGACTATGTTTATGGTGCCAAAT-CTAGAAAAGAATGGGGATTAGTATGA
* * * *** *
1913071 GTATTCATGTTTTTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAACTGCAA-GAAAAG
65 CTATTCATGTTTGTCTTAATTAAGAGACAAACTTTGATTCTATCAAAAACGGTTG-AAGGAAAAC
* * *
1913135 CTTTTCTTGCGACCCCAAAGCATCAATGTCATGTATCCTAATGAAAGG-AATGTGTTTTCGGTTC
129 CTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAACG-AAGGAAATGTGTTTTTGGTTC
** * * *
1913199 CCAATCCGGAAAAGAATGGAGACTGTTAAGAGAATCATTGCTTGCCTTATTTATGGGATGAACTA
193 CCAATCTTGAAAAGAATGGAGATTATTAAGAGAATCAATGCTTGCCTTATTTATGGGATGAACTA
* * * *
1913264 CGATTTTAAGGAAAATAGGGCAAAGAAAAAATTTTCATGCAAAAGAAAACCATCTATATTATTTC
258 CGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTA
* * * * ** *
1913329 TCCAAATGAGGAGAATGTATTTATAGT-CCTTAATTACAAAATGAATGAAGATCGTTACTGGAAT
323 TCCTAATGAGGAGAATGTGTTTATAGTGCC-TAATCACCAAATGAATGAAGATTATTACTTGAAT
* * ** *
1913393 CCATGTTTGTTTCATTTGAGGTACGAACTTAGACTTTACAAAAATTTATGGGAAGAAAGTCTTTC
387 CCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAA-AAAGCCTTTC
* **
1913458 TTGC-ATATCCAAAGCATCAATTTTG
451 TTGCGA-AACCAAAGCATCAATTTCA
* * *
1913483 TCTGTCCTAATGAGAAGACTATGTTTATGGTGCCAAATCGAGAAAAGAATGGAGATTAGTATGAC
1 TCTATCCTAATGAGAAGACTATGTTTATGGTGCCAAATCTAGAAAAGAATGGGGATTAGTATGAC
* * * * *
1913548 TATTCATGTTTGTCTTATTTAAGGGACAAACTTTGATTTTATCAAAAACGATTGAAGGAAAACCA
66 TATTCATGTTTGTCTTAATTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAGGAAAACCT
*
1913613 TTTCTTGCGACACCAAAGCATCAATGTCATGTATACTAACGAAGGAAATGTGTTTTTGGTTCCCA
131 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAACGAAGGAAATGTGTTTTTGGTTCCCA
* * ** * *
1913678 ATCCTGCAAAGAATGGAGGCTATTAAGATAATCAATGCTTGCCTTATTTAAGGGATGAACTACGA
196 ATCTTGAAAAGAATGGAGATTATTAAGAGAATCAATGCTTGCCTTATTTATGGGATGAACTACGA
* * * *
1913743 TTTTAAGGAAAATTGGGTAAAGAAAAGATTTTCATGTAAAAGAAAACAATCAATATCATTTATCC
261 TTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATCC
* *
1913808 TAATGAGGAAAATGTGTTTATAGTGCCTAATCACCGAATGAATGAAGATTATTACTTGAATCCAT
326 TAATGAGGAGAATGTGTTTATAGTGCCTAATCACCAAATGAATGAAGATTATTACTTGAATCCAT
* * **
1913873 GTTTGTCTCAATTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAGGAAAGCCTTTCTTAT
391 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGA-AAAAGCCTTTCTTGC
* *
1913938 GAAACTAAAG-AGTCAATATCA
455 GAAACCAAAGCA-TCAATTTCA
* * * * *
1913959 TGTATCCTTATGAGAAGACTAAGTTTCTGGTG-CATAATCTTGAAAAGAATGGGGATTAGTATGA
1 TCTATCCTAATGAGAAGACTATGTTTATGGTGCCA-AATCTAGAAAAGAATGGGGATTAGTATGA
* * *
1914023 CTTTTCATGTTTGTCTTAATTAAGAGACAAACTTTCATTCTATCAAAAACGGTGGAAGGAAAACC
65 CTATTCATGTTTGTCTTAATTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAGGAAAACC
* * *
1914088 TTTTCTTGCGACACCAAGGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTT-GTTCCC
130 TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAACGAAGGAAATGTGTTTTTGGTTCCC
* * * * *
1914152 AATCTTGAAAA-AATGAAGGTTATCAAGAGAATCAATGCTTGCCTTA-TTATTGGACGAACTACG
195 AATCTTGAAAAGAATGGAGATTATTAAGAGAATCAATGCTTGCCTTATTTATGGGATGAACTACG
* * * * *
1914215 ATTTTAAGGAAAATAAGGTAAAAAAAAGATTTTCATGCAAAAGAAAACAATCGATATCATTTATC
260 ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATC
* *
1914280 CTAATGAGGAAAATGTGTTTATAGTGCCTAATCACCGAATGAATGAAGATTATTACTTGAATCCA
325 CTAATGAGGAGAATGTGTTTATAGTGCCTAATCACCAAATGAATGAAGATTATTACTTGAATCCA
* * * * *
1914345 TATTTGTCTCAATTGAGGCACGAACTTAGACTTTTCAAAAATTGGTGGGAGGAAAGCCTTTCTTA
390 TGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGA-AAAAGCCTTTCTTG
* * * *
1914410 TGAAACTAAA-AAGTCAATATCA
454 CGAAACCAAAGCA-TCAATTTCA
* * * ***
1914432 TGTATCCTTATGAGAAGACTAAGTTTATGGTGTGTAATCCT-GAAAAGAATGGGGATTAGTATGA
1 TCTATCCTAATGAGAAGACTATGTTTATGGTGCCAAAT-CTAGAAAAGAATGGGGATTAGTATGA
* * * *** *
1914496 CTTTTCATGTTTGTCTTAATTAAAAGACAAACTTTCATTCTATCAAAAACACCTGCAA-GAAAAG
65 CTATTCATGTTTGTCTTAATTAAGAGACAAACTTTGATTCTATCAAAAACGGTTG-AAGGAAAAC
* *
1914560 CTTTTCTTGCGACCCCAAAGCATCAATGTCATGTATCCTAATGAAAGG-AATGTGTTTTTGGTTC
129 CTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAACG-AAGGAAATGTGTTTTTGGTTC
* ** * * *
1914624 CTAATCCAGAAAAGAATGGAGACTGTTAAGAGAATCATTGCTTGCCTTATTTATGGGATGAACTA
193 CCAATCTTGAAAAGAATGGAGATTATTAAGAGAATCAATGCTTGCCTTATTTATGGGATGAACTA
* * * * *
1914689 CGATTTTAAGGAAAATAAGGCAAAGAAAAAATTTTCATACAAAAGAAAACCATCTATATCATTTC
258 CGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTA
* * * * * ** *
1914754 TCCAAATGAGGAGAATGTATTTATAGTCCCTAATTACAAAATGAATGAAGATCGTTACTGGAATC
323 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACCAAATGAATGAAGATTATTACTTGAATC
* * * * * *
1914819 AATGTTTGTTTCATTTGAGGTACGAACTTAGACTTTACAAAAATTTGTGGGTAGAAAGTCTTTCT
388 CATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGG-AAAAAGCCTTTCT
* **
1914884 TGC-ATATCCAAAGCATCAATTTTG
452 TGCGA-AACCAAAGCATCAATTTCA
* * *
1914908 TCTGTCCTAATGAGAAGACTATGTTTATGGTGCCAAATCGAGAAAAGAATAGGGATTAGTATGAC
1 TCTATCCTAATGAGAAGACTATGTTTATGGTGCCAAATCTAGAAAAGAATGGGGATTAGTATGAC
* * * *
1914973 TATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTTTCAAAAACGGTTGAAGGAAAACCA
66 TATTCATGTTTGTCTTAATTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAGGAAAACCT
* * *
1915038 TTTCTTGCAACACCAAAGCGTCATTGTCATGTATCCTAACGAAGGAAATGTGTTTTTGGTTCCCA
131 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAACGAAGGAAATGTGTTTTTGGTTCCCA
* * * * * *
1915103 ATCCTGAAAAGAATGGAGATTGTTAAGATAATCAATGCTTGCGTTATTTAAGGGATGAACTTCGA
196 ATCTTGAAAAGAATGGAGATTATTAAGAGAATCAATGCTTGCCTTATTTATGGGATGAACTACGA
* *
1915168 TTTTAAGGAAAATAGGGCAAATAAAAGATTTTCATGCAAAAGAAAACCATAAATATCATTTATCC
261 TTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATCC
* *
1915233 TAATGAGGAGAATGTGTTTATAGTGCCTAATCACCAAATGAATGAAGATTATTACTTGAAACCTT
326 TAATGAGGAGAATGTGTTTATAGTGCCTAATCACCAAATGAATGAAGATTATTACTTGAATCCAT
* * *
1915298 GTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAGAAATTGGTGGAAAGAAAGCCTTTCTTGC
391 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAA-AAAGCCTTTCTTGC
1915363 GAAACCAAAGCATCAATTT-A
455 GAAACCAAAGCATCAATTTCA
* * *
1915383 GTCTATCATAATGAGAGGACTATGTTTATGGTGCCAAATCTTGAAAAGAATGGGGATTAGTATGA
1 -TCTATCCTAATGAGAAGACTATGTTTATGGTGCCAAATCTAGAAAAGAATGGGGATTAGTATGA
* * * * *
1915448 GTATTCGTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTTGCAA-GAAAAG
65 CTATTCATGTTTGTCTTAATTAAGAGACAAACTTTGATTCTATCAAAAACGGTTG-AAGGAAAAC
* * *
1915512 CTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGG-AATGTGTTTATGGTTC
129 CTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAACG-AAGGAAATGTGTTTTTGGTTC
* * *
1915576 CCAATCTTGAAAAGAATGGAGA-CAGTTATGAGAATCAATGCTTGCCTGATTTATGGGATGAACT
193 CCAATCTTGAAAAGAATGGAGATTA-TTAAGAGAATCAATGCTTGCCTTATTTATGGGATGAACT
* * * *
1915640 ACGATTTTAATGAAAATAGGGCAAAGAAAAGATTTTCATACAAAAGAAAACCATCTATATAATTT
257 ACGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTT
* * * * * *
1915705 CTCCTAATAAGGAGAATGTGTTTATAGT-CCTTAATTACAAAATGAATGAAGATCATTACTAGAA
322 ATCCTAATGAGGAGAATGTGTTTATAGTGCC-TAATCACCAAATGAATGAAGATTATTACTTGAA
** * * *
1915769 TCCATGTTTGTCTCATTTGAGATACGAACTTAGACTTTTCAAAAATTTGTCGGAAGAAAGCCTTT
386 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAA-AAAGCCTTT
* *
1915834 CTTGCAAAACCAAAGCATCAATTTCG
450 CTTGCGAAACCAAAGCATCAATTTCA
* * *
1915860 TCTATCCTAATGGGAAGGCTATGTTTATGGTGCCAAATCCTA-AAAAGAATGGAGATTAGTATGA
1 TCTATCCTAATGAGAAGACTATGTTTATGGTGCCAAAT-CTAGAAAAGAATGGGGATTAGTATGA
* * * *
1915924 CTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAATGATTGAAGGAAAACC
65 CTATTCATGTTTGTCTTAATTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAGGAAAACC
* * * *
1915989 TTTTCTTGCGACACCCATGCATTAATATCATGTATCCT
130 TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT
1916027 GATGACAACC
Statistics
Matches: 4321, Mismatches: 535, Indels: 122
0.87 0.11 0.02
Matches are distributed among these distances:
473 594 0.14
474 1258 0.29
475 129 0.03
476 2139 0.50
477 201 0.05
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (475 bp):
TCTATCCTAATGAGAAGACTATGTTTATGGTGCCAAATCTAGAAAAGAATGGGGATTAGTATGAC
TATTCATGTTTGTCTTAATTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAGGAAAACCT
TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAACGAAGGAAATGTGTTTTTGGTTCCCA
ATCTTGAAAAGAATGGAGATTATTAAGAGAATCAATGCTTGCCTTATTTATGGGATGAACTACGA
TTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATCC
TAATGAGGAGAATGTGTTTATAGTGCCTAATCACCAAATGAATGAAGATTATTACTTGAATCCAT
GTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGCCTTTCTTGCG
AAACCAAAGCATCAATTTCA
Found at i:1915569 original size:159 final size:159
Alignment explanation
Indices: 1911605--1916031 Score: 617
Period size: 159 Copynumber: 27.9 Consensus size: 159
1911595 AGAAGACTAC
** * * * *
1911605 GTTTATGGTGCCAAATCAAGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAA
1 GTTTATGGTGCCAAATCTTGAAAAGAATGGAGATTAGTATGAGTAATCTTGTTTGTCTTATTTAA
* * * * ** * *
1911670 GGGACAAACTTTGATTCTATCAAAAACGGTTG-AAGGAAAACCATTTCTTGTGACACCAAAGCGT
66 GAGACAAACTTTGATTCTATCAAAAACAGTTGCAA-GAAAAGCTTTTCTTGCAAAACCAAAGCAT
*
1911734 CAATGTCATGTATCCTAACG-AAGGAAATGT
130 CAATGTCATGTATCCTAATGAAAGG-AATGT
* * * * ** * * * * *
1911764 GTTTTTGGTTCCCAATCCTGAAAAGAATGGAGGCTATTAAGA-TAATCAATGCTTGCCTTATTTA
1 GTTTATGGTGCCAAATCTTGAAAAGAATGGAGATTAGTATGAGTAATC-TTGTTTGTCTTATTTA
* ** * * *** * * * * ** *
1911828 AGGGATGAACTTCGATTTTAAGGAAAATAG-GGCAAAGAAAAGATTTTCATGCAAAAGAAAACCA
65 AGAGACAAACTTTGATTCTATCAAAAACAGTTGC-AAGAAAAGCTTTTCTTGCAAAACCAAAGCA
* * * *
1911892 TCAATATCATTTATCCTAAAG-AGGAGAATGT
129 TCAATGTCATGTATCCTAATGAAAG-GAATGT
* ** *** * * *
1911923 GTTTATAGTGCGTAATCACCAAATGAATGAAGATTATTACTTGA--AAT-TGTGTTTGTCTTATT
1 GTTTATGGTGCCAAATCTTGAAAAGAATGGAGATTAGTA--TGAGTAATCT-TGTTTGTCTTATT
* * ** ** * * * *
1911985 T--GAGGCATGCACTTAAACTT-TA-CAAAAATTGGTGGAA-AGAAAGCCTTTCTTGCGAAACCA
63 TAAGAGACA--AACTTTGA-TTCTATCAAAAACAGTTGCAAGA-AAAGCTTTTCTTGCAAAACCA
* * * * * *
1912045 AAGCATCAAT-TTAGTCTATCCTAACGAGAGGACTAT
124 AAGCATCAATGTCA-TGTATCCTAATGAAAGGAATGT
* * * * * * **
1912081 GTTTATGGTGCTAAATCCT-AAAACGAATGG-GCATTAGCATAAGTATTCATGTTTGT-TGTAAA
1 GTTTATGGTGCCAAATCTTGAAAA-GAATGGAG-ATTAGTATGAGTAATCTTGTTTGTCT-TATT
* * * * *
1912143 TAAGAGACAAAATTTGATTCTATCAAAAAC-GGTGGAAGGAAAACCTTTTCTTGCAACACCAAAG
63 TAAGAGACAAACTTTGATTCTATCAAAAACAGTTGCAA-GAAAAGCTTTTCTTGCAAAACCAAAG
* *
1912207 CATCAATGTCATGTATCCTAACGAAGGGAATGT
127 CATCAATGTCATGTATCCTAATGAAAGGAATGT
* * * * * * * * *
1912240 GTTT-TTGTTCCCAATCTTGAAAA-AATAGAGATTATTAAGAG-AATCAATGCTTGCCTTATTTA
1 GTTTATGGTGCCAAATCTTGAAAAGAATGGAGATTAGTATGAGTAATC-TTGTTTGTCTTATTTA
* * ** ** * *** ** * * * * * * *
1912302 TGGGATGAACTACGATTTTAAGGAAAATTG-GGTAAAGAAAAGATTTTCATGTAAAA-GAAAACA
65 AGAGACAAACTTTGATTCTATCAAAAACAGTTG-CAAGAAAAGCTTTTCTTGCAAAACCAAAGC-
* * *
1912365 ATCAATATCATTTATCTTAATG--AGGAAAATGT
128 ATCAATGTCATGTATCCTAATGAAAGG--AATGT
* * ** * * * * * * *
1912397 GTTTATAGTGCCTAATCACCG-AATGAATGAAGATTATTACT-TG-AATCCATGTTTGTCTCAAT
1 GTTTATGGTGCCAAATC-TTGAAAAGAATGGAGATTAGTA-TGAGTAAT-CTTGTTTGTCTTATT
* * * ** * ** * * *** *
1912459 TGAG-GCACGAACTTAGACTT-TA-CAAAAATTGGTGGGAGGAAAGCCTTTCTTATGAAACTAAA
63 TAAGAG-ACAAACTTTGA-TTCTATCAAAAACAGTTGCAAGAAAAGCTTTTCTTGCAAAACCAAA
* * * **
1912521 G-AGTCAATATCATGTATCCTTATGAGAA-GACTAA
126 GCA-TCAATGTCATGTATCCTAATGA-AAGGAATGT
* ** * * * ** * *
1912555 GTTTCTGGTGCGTAATCCTGAAAAGAATGGGGATTAGTATGACTTTTCATGTTTGTCTTAATTAA
1 GTTTATGGTGCCAAATCTTGAAAAGAATGGAGATTAGTATGAGTAATCTTGTTTGTCTTATTTAA
* * * * * *
1912620 GAGACAAACTTTGATTCTATCAAAAAC-GGTGGAAGGAAAACCTTTTCTTGCGACACCAAGGCAT
66 GAGACAAACTTTGATTCTATCAAAAACAGTTGCAA-GAAAAGCTTTTCTTGCAAAACCAAAGCAT
* *
1912684 CAATGTCATGTATCCTAACGAAGGGAATGT
130 CAATGTCATGTATCCTAATGAAAGGAATGT
** * * * * * * * *
1912714 GTTT-TTTTTCCCAATCTTGAAAA-AATGAAGGTTA-TCAAGAG-AATCAATGCTTGCCTTA-TT
1 GTTTATGGTGCCAAATCTTGAAAAGAATGGAGATTAGT-ATGAGTAATC-TTGTTTGTCTTATTT
* * *** * *** * * * * * * * *
1912774 ATTG-GACGAACTACAATTTTAAGGAAAATAG-GGTAAAGAAAAGATTTTCATGTAAAA-GAAAA
64 A-AGAGACAAACTTTGATTCTATCAAAAACAGTTG-CAAGAAAAGCTTTTCTTGCAAAACCAAAG
* * *
1912836 CAATGAATTTCATTTATCCTAATG--AGGAAAATGT
127 C-ATCAATGTCATGTATCCTAATGAAAGG--AATGT
* * * * ** * * * *
1912870 GTTTATAGTGCCTAATCACTG-AATGAATAAAGATTATTACT-TG-AATCCATT-TTTGTCTCAA
1 GTTTATGGTGCCAAATC-TTGAAAAGAATGGAGATTAGTA-TGAGTAAT-C-TTGTTTGTCTTAT
* ** * ** * * *
1912931 TTGAG-GTATGAACTTAGACTT-TA-CAAAAATTGGTGGGAAG-AAAGCCTTTCTTATG-AAAAC
62 TTAAGAG-ACAAACTTTGA-TTCTATCAAAAA-CAGTTGCAAGAAAAGCTTTTC-T-TGCAAAAC
* * * * **
1912991 TATAA--AGTCAATATCATGTATCCTTATGAGAA-GACTAA
122 CA-AAGCA-TCAATGTCATGTATCCTAATGA-AAGGAATGT
*** * * * *
1913029 GTTTATGGTGTGTAATCCTT-AAAAGAATGGGGATTAGTATGAGTATTCATGTTTTTCTTATTTA
1 GTTTATGGTGCCAAAT-CTTGAAAAGAATGGAGATTAGTATGAGTAATCTTGTTTGTCTTATTTA
** * **
1913093 AGAGACAAACTTTGATTCTATCAAAAACAACTGCAAGAAAAGCTTTTCTTGCGACCCCAAAGCAT
65 AGAGACAAACTTTGATTCTATCAAAAACAGTTGCAAGAAAAGCTTTTCTTGCAAAACCAAAGCAT
1913158 CAATGTCATGTATCCTAATGAAAGGAATGT
130 CAATGTCATGTATCCTAATGAAAGGAATGT
* * ** * * * *
1913188 GTTT-TCGGTTCCCAATCCGGAAAAGAATGGAGACT-GTTAAGAG-AATCATTGCTTGCCTTATT
1 GTTTAT-GGTGCCAAATCTTGAAAAGAATGGAGATTAG-TATGAGTAATC-TTGTTTGTCTTATT
* * ** ** * *** * * ** * ** *
1913250 TATGGGATGAACTACGATTTTAAGGAAAATAG-GGCAAAGAAAAAATTTTCATGCAAAAGAAAAC
63 TAAGAGACAAACTTTGATTCTATCAAAAACAGTTGC-AAGAAAAGCTTTTCTTGCAAAACCAAAG
* * * * * * *
1913314 CATCTATATTATTTCTCCAAATG-AGGAGAATGT
127 CATCAATGTCATGTATCCTAATGAAAG-GAATGT
* * * ** * * *
1913347 ATTTATAGT-CCTTAAT-TACAAAATGAATGAAGA-TCGTTACTG-G-AATCCATGTTTGT-TTC
1 GTTTATGGTGCC-AAATCTTGAAAA-GAATGGAGATTAG-TA-TGAGTAAT-CTTGTTTGTCTT-
* * * * * * *
1913406 ATTTGAG-GTACGAACTTAGACTT-TA-CAAAAATTTA-TGGGAAG-AAAG-TCTTTCTTGCATA
60 ATTTAAGAG-ACAAACTTTGA-TTCTATCAAAAA--CAGTTGCAAGAAAAGCT-TTTCTTGCAAA
* * ** * * * *
1913465 TCCAAAGCATCAATTTTGTCTGTCCTAATGAGAA-GACTAT
120 ACCAAAGCATCAATGTCATGTATCCTAATGA-AAGGAATGT
** * * *
1913505 GTTTATGGTGCCAAATCGAGAAAAGAATGGAGATTAGTATGACTATTCATGTTTGTCTTATTTAA
1 GTTTATGGTGCCAAATCTTGAAAAGAATGGAGATTAGTATGAGTAATCTTGTTTGTCTTATTTAA
* * * * * *
1913570 GGGACAAACTTTGATTTTATCAAAAAC-GATTG-AAGGAAAACCATTTCTTGCGACACCAAAGCA
66 GAGACAAACTTTGATTCTATCAAAAACAG-TTGCAA-GAAAAGCTTTTCTTGCAAAACCAAAGCA
* *
1913633 TCAATGTCATGTATACTAACG-AAGGAAATGT
129 TCAATGTCATGTATCCTAATGAAAGG-AATGT
* * * * * ** * * * * *
1913664 GTTTTTGGTTCCCAATCCTGCAAAGAATGGAGGCTATTAAGA-TAATCAATGCTTGCCTTATTTA
1 GTTTATGGTGCCAAATCTTGAAAAGAATGGAGATTAGTATGAGTAATC-TTGTTTGTCTTATTTA
* ** ** * *** ** * * * * * * *
1913728 AGGGATGAACTACGATTTTAAGGAAAATTG-GGTAAAGAAAAGATTTTCATGTAAAA-GAAAACA
65 AGAGACAAACTTTGATTCTATCAAAAACAGTTG-CAAGAAAAGCTTTTCTTGCAAAACCAAAGC-
* *
1913791 ATCAATATCATTTATCCTAATG--AGGAAAATGT
128 ATCAATGTCATGTATCCTAATGAAAGG--AATGT
* * ** * * * * * * *
1913823 GTTTATAGTGCCTAATCACCG-AATGAATGAAGATTATTACT-TG-AATCCATGTTTGTCTCAAT
1 GTTTATGGTGCCAAATC-TTGAAAAGAATGGAGATTAGTA-TGAGTAAT-CTTGTTTGTCTTATT
* * * ** * ** * * *** *
1913885 TGAG-GCACGAACTTAGACTT-TA-CAAAAATTGGTGGGAGGAAAGCCTTTCTTATGAAACTAAA
63 TAAGAG-ACAAACTTTGA-TTCTATCAAAAACAGTTGCAAGAAAAGCTTTTCTTGCAAAACCAAA
* * * **
1913947 G-AGTCAATATCATGTATCCTTATGAGAA-GACTAA
126 GCA-TCAATGTCATGTATCCTAATGA-AAGGAATGT
* * * ** * *
1913981 GTTTCTGGTG-CATAATCTTGAAAAGAATGGGGATTAGTATGACTTTTCATGTTTGTCTTAATTA
1 GTTTATGGTGCCA-AATCTTGAAAAGAATGGAGATTAGTATGAGTAATCTTGTTTGTCTTATTTA
* * * * * * *
1914045 AGAGACAAACTTTCATTCTATCAAAAAC-GGTGGAAGGAAAACCTTTTCTTGCGACACCAAGGCA
65 AGAGACAAACTTTGATTCTATCAAAAACAGTTGCAA-GAAAAGCTTTTCTTGCAAAACCAAAGCA
*
1914109 TCAATGTCATGTATCCTAATGAAGGGAATGT
129 TCAATGTCATGTATCCTAATGAAAGGAATGT
* * * * * * * * *
1914140 GTTT-TTGTTCCCAATCTTGAAAA-AATGAAGGTTA-TCAAGAG-AATCAATGCTTGCCTTA-TT
1 GTTTATGGTGCCAAATCTTGAAAAGAATGGAGATTAGT-ATGAGTAATC-TTGTTTGTCTTATTT
* * ** * ** * * * * * *
1914200 ATTG-GACGAACTACGATTTTAAGGAAAATA-AGGT-AAAAAAAAGATTTTCATGCAAAA-GAAA
64 A-AGAGACAAACTTTGATTCT-ATCAAAA-ACAGTTGCAAGAAAAGCTTTTCTTGCAAAACCAAA
* * * *
1914261 ACAATCGATATCATTTATCCTAATG--AGGAAAATGT
126 GC-ATCAATGTCATGTATCCTAATGAAAGG--AATGT
* * ** * * * * * * * *
1914296 GTTTATAGTGCCTAATCACCG-AATGAATGAAGATTATTACT-TG-AATCCATATTTGTCTCAAT
1 GTTTATGGTGCCAAATC-TTGAAAAGAATGGAGATTAGTA-TGAGTAAT-CTTGTTTGTCTTATT
* * * ** * ** * * *** *
1914358 TGAG-GCACGAACTTAGACTT-T-TCAAAAATTGGTGGGAGGAAAGCCTTTCTTATGAAACTAAA
63 TAAGAG-ACAAACTTTGA-TTCTATCAAAAACAGTTGCAAGAAAAGCTTTTCTTGCAAAACCAAA
* * * * **
1914420 -AAGTCAATATCATGTATCCTTATGAGAA-GACTAA
126 GCA-TCAATGTCATGTATCCTAATGA-AAGGAATGT
*** * * * ** * *
1914454 GTTTATGGTGTGTAATCCTGAAAAGAATGGGGATTAGTATGACTTTTCATGTTTGTCTTAATTAA
1 GTTTATGGTGCCAAATCTTGAAAAGAATGGAGATTAGTATGAGTAATCTTGTTTGTCTTATTTAA
* * ** * **
1914519 AAGACAAACTTTCATTCTATCAAAAACACCTGCAAGAAAAGCTTTTCTTGCGACCCCAAAGCATC
66 GAGACAAACTTTGATTCTATCAAAAACAGTTGCAAGAAAAGCTTTTCTTGCAAAACCAAAGCATC
1914584 AATGTCATGTATCCTAATGAAAGGAATGT
131 AATGTCATGTATCCTAATGAAAGGAATGT
* * * ** * * * *
1914613 GTTTTTGGTTCCTAATCCAGAAAAGAATGGAGACT-GTTAAGAG-AATCATTGCTTGCCTTATTT
1 GTTTATGGTGCCAAATCTTGAAAAGAATGGAGATTAG-TATGAGTAATC-TTGTTTGTCTTATTT
* * ** ** * ** ** * * **
1914676 ATGGGATGAACTACGATTTTAAGGAAAATA-AG--GCAAAGAAAAAATTTTCATACAAAAGAAAA
64 AAGAGACAAACTTTGATTCT-ATCAAAA-ACAGTTGC-AAGAAAAGCTTTTCTTGCAAAACCAAA
* * * * * * *
1914738 CCATCTATATCATTTCTCCAAATG-AGGAGAATGT
126 GCATCAATGTCATGTATCCTAATGAAAG-GAATGT
* * * * ** * * *
1914772 ATTTATAGTCCCTAAT-TACAAAATGAATGAAGA-TCGTTACTG-G-AATCAATGTTTGT-TTCA
1 GTTTATGGTGCCAAATCTTGAAAA-GAATGGAGATTAG-TA-TGAGTAATC-TTGTTTGTCTT-A
* * * ** * ** * *
1914832 TTTGAG-GTACGAACTTAGACTT-TA-CAAAAATTTGTGGGTAG-AAAG-TCTTTCTTGCATATC
61 TTTAAGAG-ACAAACTTTGA-TTCTATCAAAAA-CAGTTGCAAGAAAAGCT-TTTCTTGCAAAAC
* ** * * * *
1914892 CAAAGCATCAATTTTGTCTGTCCTAATGAGAA-GACTAT
122 CAAAGCATCAATGTCATGTATCCTAATGA-AAGGAATGT
** * *
1914930 GTTTATGGTGCCAAATCGAGAAAAGAATAGG-GATTAGTATGACTATTCTTGTTTGTCTTATTTA
1 GTTTATGGTGCCAAATCTTGAAAAGAAT-GGAGATTAGTATGAGTAATCTTGTTTGTCTTATTTA
* * * * * *
1914994 AGAGACAAACTTTGATTCTTTCAAAAACGGTTG-AAGGAAAACCATTTCTTGCAACACCAAAGCG
65 AGAGACAAACTTTGATTCTATCAAAAACAGTTGCAA-GAAAAGCTTTTCTTGCAAAACCAAAGCA
* *
1915058 TCATTGTCATGTATCCTAACG-AAGGAAATGT
129 TCAATGTCATGTATCCTAATGAAAGG-AATGT
* * * * * * *
1915089 GTTTTTGGTTCCCAATCCTGAAAAGAATGGAGATT-GT-TAAGATAATCAATGCTTG-CGTTATT
1 GTTTATGGTGCCAAATCTTGAAAAGAATGGAGATTAGTATGAG-TAATC-TTGTTTGTC-TTATT
* ** * * *** * * * * * ** *
1915151 TAAGGGATGAACTTCGATTTTAAGGAAAATAG-GGCAAATAAAAGATTTTCATGCAAAAGAAAAC
63 TAAGAGACAAACTTTGATTCTATCAAAAACAGTTGC-AAGAAAAGCTTTTCTTGCAAAACCAAAG
* * * *
1915215 CATAAATATCATTTATCCTAATG-AGGAGAATGT
127 CATCAATGTCATGTATCCTAATGAAAG-GAATGT
* * *** * * * * *
1915248 GTTTATAGTGCCTAATCACCAAATGAATGAAGATTATTACTTGA--AACCTTGTTTGTCTCATTT
1 GTTTATGGTGCCAAATCTTGAAAAGAATGGAGATTAGTA--TGAGTAATCTTGTTTGTCTTATTT
* * * ** * * * *
1915311 --GAGGCATGAACTTAGACTT-TA-CAGAAATTGGTGGAA-AGAAAGCCTTTCTTGCGAAACCAA
64 AAGAGACA--AACTTTGA-TTCTATCAAAAACAGTTGCAAGA-AAAGCTTTTCTTGCAAAACCAA
* * * * * *
1915371 AGCATCAAT-TTAGTCTATCATAATGAGAGGACTAT
125 AGCATCAATGTCA-TGTATCCTAATGAAAGGAATGT
* * *
1915406 GTTTATGGTGCCAAATCTTGAAAAGAATGGGGATTAGTATGAGTATTCGTGTTTGTCTTATTTAA
1 GTTTATGGTGCCAAATCTTGAAAAGAATGGAGATTAGTATGAGTAATCTTGTTTGTCTTATTTAA
** *
1915471 GAGACAAACTTTGATTCTATCAAAAACAGTTGCAAGAAAAGCTTTTCTTGTGACACCAAAGCATC
66 GAGACAAACTTTGATTCTATCAAAAACAGTTGCAAGAAAAGCTTTTCTTGCAAAACCAAAGCATC
1915536 AATGTCATGTATCCTAATGAAAGGAATGT
131 AATGTCATGTATCCTAATGAAAGGAATGT
* * * * * * *
1915565 GTTTATGGTTCCCAATCTTGAAAAGAATGGAGA-CAGTTATGAG-AATCAATGCTTGCCTGATTT
1 GTTTATGGTGCCAAATCTTGAAAAGAATGGAGATTAG-TATGAGTAATC-TTGTTTGTCTTATTT
* * ** ** * * * * * * * ** *
1915628 ATGGGATGAACTACGATTTTAAT-GAAAATAG-GGCAAAGAAAAGATTTTCATACAAAAGAAAAC
64 AAGAGACAAACTTTGATTCT-ATCAAAAACAGTTGC-AAGAAAAGCTTTTCTTGCAAAACCAAAG
* * * * * *
1915691 CATCTATATAATTTCTCCTAAT-AAGGAGAATGT
127 CATCAATGTCATGTATCCTAATGAAAG-GAATGT
* * ** * * * * *
1915724 GTTTATAGT-CCTTAAT-TACAAAATGAATGAAGATCATTACT-AG-AATCCATGTTTGTCTCAT
1 GTTTATGGTGCC-AAATCTTGAAAA-GAATGGAGATTAGTA-TGAGTAAT-CTTGTTTGTCTTAT
* * * * ** * * *
1915785 TTGAGATACGAACTTAGACTT-T-TCAAAAATTTGTCGGAAG-AAAGCCTTTCTTGCAAAACCAA
62 TTAAGAGACAAACTTTGA-TTCTATCAAAAA-CAGTTGCAAGAAAAGCTTTTCTTGCAAAACCAA
* * * * * *
1915847 AGCATCAATTTCGTCTATCCTAATGGGAAGG-CTAT
125 AGCATCAATGTCATGTATCCTAAT-GAAAGGAATGT
* * * * *
1915882 GTTTATGGTGCCAAATCCTAAAAAGAATGGAGATTAGTATGACTATTCATGTTTGTCTTATTTAA
1 GTTTATGGTGCCAAATCTTGAAAAGAATGGAGATTAGTATGAGTAATCTTGTTTGTCTTATTTAA
* * * * *
1915947 GAGACAAACTTTGATTCTAT-AAAAA-ATGATTG-AAGGAAAACCTTTTCTTGCGACACCCATGC
66 GAGACAAACTTTGATTCTATCAAAAACA-G-TTGCAA-GAAAAGCTTTTCTTGCAAAACCAAAGC
* * *
1916009 ATTAATATCATGTATCCTGATGA
128 ATCAATGTCATGTATCCTAATGA
1916032 CAACCATGAA
Statistics
Matches: 3006, Mismatches: 979, Indels: 567
0.66 0.22 0.12
Matches are distributed among these distances:
154 4 0.00
155 8 0.00
156 137 0.05
157 229 0.08
158 973 0.32
159 1531 0.51
160 112 0.04
161 9 0.00
162 1 0.00
163 2 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (159 bp):
GTTTATGGTGCCAAATCTTGAAAAGAATGGAGATTAGTATGAGTAATCTTGTTTGTCTTATTTAA
GAGACAAACTTTGATTCTATCAAAAACAGTTGCAAGAAAAGCTTTTCTTGCAAAACCAAAGCATC
AATGTCATGTATCCTAATGAAAGGAATGT
Found at i:1923578 original size:42 final size:42
Alignment explanation
Indices: 1923506--1923637 Score: 176
Period size: 42 Copynumber: 3.1 Consensus size: 42
1923496 TCACTCTTCC
* * * *
1923506 ATCT-TCTTCTCTCCTCTTCCTGTCATCCCTCCTCTCTCTATT
1 ATCTCTCTTGTCT-CTCCTCCTATCATCCCTCCTCTCTCTACT
*
1923548 ATCTCTCTTGTCTCTCCTCCTATCATCCCTCCTATCTCTACT
1 ATCTCTCTTGTCTCTCCTCCTATCATCCCTCCTCTCTCTACT
* *
1923590 ATCTCTCCTGTCTCTCCTCCTATCATCCCTCCTCTCTCTTCT
1 ATCTCTCTTGTCTCTCCTCCTATCATCCCTCCTCTCTCTACT
*
1923632 TTCTCT
1 ATCTCT
1923638 TTGAGGGCTA
Statistics
Matches: 80, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
42 73 0.91
43 7 0.09
ACGTcount: A:0.08, C:0.44, G:0.02, T:0.45
Consensus pattern (42 bp):
ATCTCTCTTGTCTCTCCTCCTATCATCCCTCCTCTCTCTACT
Found at i:1927729 original size:42 final size:42
Alignment explanation
Indices: 1927669--1927776 Score: 146
Period size: 42 Copynumber: 2.6 Consensus size: 42
1927659 TCACTCTTCC
* * * *
1927669 ATCT-TCTTTTCTCCTCCTCCTGTCATCCCTCCTCTCTCTATT
1 ATCTCTCTTATCT-CTCCTCCTATCATCCCTCCTATCTCTACT
*
1927711 ATCTCTCTTATCTCTCCTCCTATCATCTCTCCTATCTCTACT
1 ATCTCTCTTATCTCTCCTCCTATCATCCCTCCTATCTCTACT
*
1927753 ATCTCTCCTATCTCTCCTCCTATC
1 ATCTCTCTTATCTCTCCTCCTATC
1927777 TCTTCTTTCT
Statistics
Matches: 59, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
42 52 0.88
43 7 0.12
ACGTcount: A:0.11, C:0.43, G:0.01, T:0.45
Consensus pattern (42 bp):
ATCTCTCTTATCTCTCCTCCTATCATCCCTCCTATCTCTACT
Found at i:1927742 original size:12 final size:12
Alignment explanation
Indices: 1927700--1927746 Score: 51
Period size: 12 Copynumber: 3.8 Consensus size: 12
1927690 GTCATCCCTC
*
1927700 CTCTCTCTATTAT
1 CTCTC-CTATCAT
*
1927713 CTCTCTTATC-T
1 CTCTCCTATCAT
1927724 CTCCTCCTATCAT
1 CT-CTCCTATCAT
1927737 CTCTCCTATC
1 CTCTCCTATC
1927747 TCTACTATCT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
11 3 0.10
12 18 0.62
13 8 0.28
ACGTcount: A:0.13, C:0.40, G:0.00, T:0.47
Consensus pattern (12 bp):
CTCTCCTATCAT
Found at i:1927763 original size:30 final size:30
Alignment explanation
Indices: 1927727--1927788 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
1927717 CTTATCTCTC
1927727 CTCCTATCATCT-CTCCTATCTCTACTATCT
1 CTCCTATC-TCTCCTCCTATCTCTACTATCT
* *
1927757 CTCCTATCTCTCCTCCTATCTCTTCTTTCT
1 CTCCTATCTCTCCTCCTATCTCTACTATCT
1927787 CT
1 CT
1927789 TTAAGGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 3 0.10
30 26 0.90
ACGTcount: A:0.11, C:0.42, G:0.00, T:0.47
Consensus pattern (30 bp):
CTCCTATCTCTCCTCCTATCTCTACTATCT
Found at i:1927769 original size:9 final size:9
Alignment explanation
Indices: 1927710--1927770 Score: 65
Period size: 9 Copynumber: 7.1 Consensus size: 9
1927700 CTCTCTCTAT
*
1927710 TATCTCTCT
1 TATCTCTCC
1927719 TATCTCTCC
1 TATCTCTCC
* *
1927728 T-CCTAT-C
1 TATCTCTCC
1927735 -ATCTCTCC
1 TATCTCTCC
*
1927743 TATCTCTAC
1 TATCTCTCC
1927752 TATCTCTCC
1 TATCTCTCC
1927761 TATCTCTCC
1 TATCTCTCC
1927770 T
1 T
1927771 CCTATCTCTT
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
7 4 0.10
8 4 0.10
9 34 0.81
ACGTcount: A:0.13, C:0.41, G:0.00, T:0.46
Consensus pattern (9 bp):
TATCTCTCC
Found at i:1927774 original size:12 final size:11
Alignment explanation
Indices: 1927712--1927779 Score: 63
Period size: 12 Copynumber: 6.3 Consensus size: 11
1927702 CTCTCTATTA
*
1927712 TCTCTCTTATC
1 TCTCTCCTATC
1927723 TCTCCTCCTATC
1 TCT-CTCCTATC
1927735 ATCTCTCCTA--
1 -TCTCTCCTATC
*
1927745 TCTCTACTA--
1 TCTCTCCTATC
1927754 TCTCTCCTATC
1 TCTCTCCTATC
1927765 TCTCCTCCTATC
1 TCT-CTCCTATC
1927777 TCT
1 TCT
1927780 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
9 16 0.33
11 6 0.12
12 24 0.49
13 3 0.06
ACGTcount: A:0.12, C:0.43, G:0.00, T:0.46
Consensus pattern (11 bp):
TCTCTCCTATC
Found at i:1930357 original size:476 final size:473
Alignment explanation
Indices: 1929431--1933088 Score: 4151
Period size: 476 Copynumber: 7.7 Consensus size: 473
1929421 TGGATCCCAC
* * * *
1929431 TCCTAATGAGGAGAATGTGTTTATAATGCCTAATTACAAAATGAATGAAGATTATTTCTAGAATC
1 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC
* * * * * *
1929496 CATGTTTGTCTCACTTCAGGCACGAACTTAGACTTTATAAAAATTGGAGGGAAGAAAGCATTTAT
66 CATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCT
* * * *** *
1929561 TGCAAAACCAAAGCATCAATTTCGTCTATACTAATGAGAAGACTATGTTTATGGTGTGTAATGCT
131 TGCGAAACCAAAGCATCAA-TTCATCTATCCTAATGAGAAGACTATGTTTATGGTGCCAAATCCT
* * *
1929626 TAAAA-AATTGGGATTAGTATGAGTATTC-TCGTTTGTCCTATTTAAGTGACAAACTTTGATTCT
195 TAAAAGAATGGGGATTAGTATGAGTATTCAT-GTTTGTCTTATTTAAGAGACAAACTTTGATTCT
* * * * * * * *
1929689 GTAAAAAACGGCTGCAAGAAAAGCTTTTCTTACAACCCCAAAGCATCAATGTCATCTATCGTAAT
259 ATCAAAAACAGTTGCAAGAAAAGCTTTTCTTGCGA-CCCAAAGCATCAATGTCATGTATCCTAAT
* * * *
1929754 GAAGGGAATATG---TTGGTTCCCAATCATGAAAATATTGTAGGCTATTATGAGAATCAATGCTT
323 GAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGTAGGCTATTATGAGAATCAATGCTT
* * * *
1929816 ACCTTATTTAAGGGATAAACATCGATTTTAAGGAAAACAGGGCAAAGAAAAGATTTTCATGCAAA
388 GCCTTATTTATGGGATGAAC-TCGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAA
* * *
1929881 AGCAAACCATCAATATCGTTAA
452 AGAAAACCATCAATATCATTTA
* * * *
1929903 TCCTAATCAGGAGAATGTGTTTATAGTGCCCAATTACAAAATGAATGAAGATCATTATTAGAATC
1 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC
* * * * * * *
1929968 TATGTTTGTCTCGTTTGAGGCACAAACTTAAACTTTTCACAAATTGGTGGCAAGAAAGCCTTTCT
66 CATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCT
* ** * * * **
1930033 TACGAAACTGAAG-AGGCAATATCATGTATCCCT-ATGAGAAGACTAAGTTTATGGTGCGTAATC
131 TGCGAAACCAAAGCA-TCAAT-TCATCTAT-CCTAATGAGAAGACTATGTTTATGGTGCCAAATC
* *
1930096 CTTAATAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTC
193 CTTAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
* * * * *
1930161 TATCAAAAACGGTTGCAAGAAAAGCTTTTCTTGTGACCTCAAAGCATTAATGTCATCTATCGTAA
258 TATCAAAAACAGTTGCAAGAAAAGCTTTTCTTGCGACC-CAAAGCATCAATGTCATGTATCCTAA
* * * * * *
1930226 TGAAGAGAATGTGTTTTTGGTTCCTAATCTTGAAAATATTATAGGCTATTATGAGAATTAATGCT
322 TGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGTAGGCTATTATGAGAATCAATGCT
* * * **
1930291 TGCCTTATTTAAGGGATAAACATCGATTTTAAGGAAAACAGCACAAAGAAAAGATTTTCATGCAA
387 TGCCTTATTTATGGGATGAAC-TCGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAA
* *
1930356 AAGCAAACCATCAATATCATTAA
451 AAGAAAACCATCAATATCATTTA
* * *
1930379 TCCTAATCAGGAGAATGTGTTTATAGTGCCCAATCACAAAATGAATGAAGATCATTATTAGAATC
1 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC
* * * *
1930444 CATGTTTGTCTCATTTGAGGCACAAACTTAAACTTTATAAAAATTGGTGGGAAGAAAGCTTTTCT
66 CATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCT
* * * * ** * * * **
1930509 TACAAAACTAAAG-AGTCGATATCAAGTATCCTTATGAGAAGATTAAGTTTATGGTGCGTAATCC
131 TGCGAAACCAAAGCA-TCAAT-TCATCTATCCTAATGAGAAGACTATGTTTATGGTGCCAAATCC
* * * * *
1930573 TTAAAACAATGGGGACTAGTATGAGTGTTCGTGTTTGTCTTATTTAAGAGACAAACTTTGCTTCT
194 TTAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
*
1930638 ATCAAAAACAGTTGGAAGAAAAG-TGTTTCTTGCGACCCCAAAGCATCAATGTCATGTATCCTAA
259 ATCAAAAACAGTTGCAAGAAAAGCT-TTTCTTGCGA-CCCAAAGCATCAATGTCATGTATCCTAA
* * * * * * * * *
1930702 TGAAGGAAATTTGTTTTTTGTTCCCAATCCTAAAAAGAATGGAGACTGTTAAGAGAATCAATGCT
322 TGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGTAGGCTATTATGAGAATCAATGCT
* * * *
1930767 TGCTTTATTTATGGGATGAACTACAATTTTAAGGATAATAGGGCAAAGAAAAGATTTTCATACAA
387 TGCCTTATTTATGGGATGAACT-CGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAA
* *
1930832 AAGAAAACCATCTATATCATTTC
451 AAGAAAACCATCAATATCATTTA
*
1930855 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCCTTACTAGAATC
1 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC
* *
1930920 AATGTTTGTCTCATTTGAGGCACGAACTTAGAC-TTAGCAAAAATTGGTGGCAAGAAA-------
66 CATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTA-CAAAAATTGGTGGGAAGAAAGCCTTTC
* ** * * * *
1930977 ----GAATCCAAAGCATCAATTTTGTCTGTCCTAAAGAGAAGGC--TGTTTATGGGGCCAAATCC
130 TTGCGAAACCAAAGCATCAA-TTCATCTATCCTAATGAGAAGACTATGTTTATGGTGCCAAATCC
* * * * * *
1931036 TAAAAAGAATAGGGATTATTATGACTAGTCATGTTTGTCTTAATTAAGAGACAAACTTTGATTCT
194 TTAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
* * * * * * * *
1931101 AACAAAAA-TGGTGGAAGGAAAACCATTTCTTACGACACCAAAGCATCAATGTCTTGTATCCTAA
259 ATCAAAAACAGTTGCAA-GAAAAGCTTTTCTTGCGAC-CCAAAGCATCAATGTCATGTATCCTAA
* * ** * *
1931165 CGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAA-AATGGAGATTGTTAAGAGAATCAATGCT
322 TGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGTAGGCTATTATGAGAATCAATGCT
* *
1931229 TGCCTTATTTATGGGATGAACTACGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCACG-AA
387 TGCCTTATTTATGGGATGAACT-CGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAA
* * *
1931293 GAAGAAAGCCACCAACATCATTTA
451 -AAGAAAACCATCAATATCATTTA
* * *
1931317 TCCTATTGAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAATGAAGATCATTACTAGAATT
1 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC
* * *
1931382 CATGTTTGTCTTATTTGAGGAACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCTTTTCT
66 CATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCT
* * * * * *
1931447 TGCAAAACCAAAGCATCAATTTAGTCTATTCTAGTGGGAAGACTATGTTTCTGGTGCCAAATCCT
131 TGCGAAACCAAAGCATCAATTCA-TCTATCCTAATGAGAAGACTATGTTTATGGTGCCAAATCCT
* * * * * * ***
1931512 GAACAGAATGGAGACTAGTAAGAGTATTCAAGTTTGTCTTATTTAAGAGACGTTTCTTTGATTAC
195 TAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAC-AAACTTTGATT-C
* * * * *
1931577 -ATCAAAACCAGTTACAAGAAAAGATTTTCTTGTGACACCAAAGCATCAATGTCTTGTATCCTAA
258 TATCAAAAACAGTTGCAAGAAAAGCTTTTCTTGCGAC-CCAAAGCATCAATGTCATGTATCCTAA
* * * * *
1931641 TGAAAGGAATGTGTTTATGGTTCCCAATCTTGAAAAGAATGGA-G--ACTATGAGAATCAATGCC
322 TGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGTAGGCTATTATGAGAATCAATGCT
* * * * *
1931703 TGCCTTGTTTATGAGATGAACTATGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAG
387 TGCCTTATTTATGGGATGAACT-CGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAA
** *
1931768 AAGAAAACCATCTCTATCATTTC
451 AAGAAAACCATCAATATCATTTA
* * * * * *
1931791 TCCTAGTGAGGAGAATGTGTTCATTGTGCCTAATCACAAAATGCATGATGATTATTACTAGAATC
1 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC
* * * * *
1931856 CATGTTTGTCTCACTTGAGGCACGAACTTAGACTTTACAGAAATTAGCGGGAAGAAAGCTTTTCT
66 CATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCT
* * * * * *
1931921 TGAGAAACCAAACCAACAATTTAGTCTATTCTACTGAGAAGACTATGTTTATGGTGCCAAATCCT
131 TGCGAAACCAAAGCATCAATTCA-TCTATCCTAATGAGAAGACTATGTTTATGGTGCCAAATCCT
* * * *
1931986 GAAAAGAATGGGGATTAGTACGAGTATTCAAGTTTGACTTATTTAAGAGACAAACTTTGATTCTA
195 TAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
* * * * *
1932051 TCAAAAACAGTTGCAAGAAAAGATTTTCTTACAACACCAAAGCATCAACGTCTTGTATCCTAATG
260 TCAAAAACAGTTGCAAGAAAAGCTTTTCTTGCGAC-CCAAAGCATCAATGTCATGTATCCTAATG
** * *
1932116 AAATGAATGTGTTTATGGTTCCCAATCTTGAAAAGAATGGA-G--ATTATGAGAATCAATGCTTG
324 AAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGTAGGCTATTATGAGAATCAATGCTTG
* *
1932178 CCTT-TTTTTGGGATGAACTACGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATACAAAA
389 CCTTATTTATGGGATGAACT-CGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAA
** *
1932242 GAAAACCATCTCTATCATTTC
453 GAAAACCATCAATATCATTTA
* * * *
1932263 TCC-AAGTGAGGAGAATGTGTTCATTA-TGCCTAATCACAAAATGAATGATGATCATTTCTTGAA
1 TCCTAA-TGAGGAGAATGTGTTTA-TAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAA
* *
1932326 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGAC-TTAGCAAAAATTGGTGGCAAGAAAGTCTT
64 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTA-CAAAAATTGGTGGGAAGAAAGCCTT
* * * ** *
1932390 TCTTGTGAATCTAAAGCATCAATTTTGTCTGTCCTAATGAGAAGACTATGTTTATGGTGCCAAAT
128 TCTTGCGAAACCAAAGCATCAA-TTCATCTATCCTAATGAGAAGACTATGTTTATGGTGCCAAAT
* * * *
1932455 CCTGAAAAGAACGGGGATTAGTATG-GTTATTCATGTTTGTCTTAATTAAGAGATAAACTTTGAT
192 CCTTAAAAGAATGGGGATTAGTATGAG-TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
* * * * *
1932519 TCTATAAAAAACAG-TGGAAGGAAAACCTTTTCTTGCTATACCAAAGCATCAATGTCATGTATCC
256 TCTATCAAAAACAGTTGCAA-GAAAAGCTTTTCTTGCGA-CCCAAAGCATCAATGTCATGTATCC
** * * * * * * *
1932583 TAGCGAAGGGAATGTGTTTTTGGTTCCAAATCCTGAATAGAATGGAGACTGTTAAGAGAATCAAT
319 TAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGTAGGCTATTATGAGAATCAAT
*
1932648 GCTTGCCTTATTTATGGGATGAACTTCGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTTCATG
384 GCTTGCCTTATTTATGGGATGAAC-TCGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATG
1932713 CAAAAGAAAACCATCAATATCATTTA
448 CAAAAGAAAACCATCAATATCATTTA
* * * * * *
1932739 TACTACTGAGGAGAATGTGTTTTTAGTGCCTAATTAC-AAATGAATGCAGATTATTACTAGAATC
1 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC
* * * *
1932803 CGTGTTTATCTCACTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAA-CTCTTTC
66 CATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGC-CTTTC
* ** *
1932867 TTGCGAAACCAAAGCATCAATTTCGTCTATCCTAATGAGAAGACTATGTTTATGGTGCGTAACCC
130 TTGCGAAACCAAAGCATCAA-TTCATCTATCCTAATGAGAAGACTATGTTTATGGTGCCAAATCC
1932932 TTAAAAGAATGGGGATTAGTATGAGTATTC-TCGTTTGTCTTATTTAAGAGACAAACTTTGATTC
194 TTAAAAGAATGGGGATTAGTATGAGTATTCAT-GTTTGTCTTATTTAAGAGACAAACTTTGATTC
* * * * * * *
1932996 TGTCAAAAACGGTTGCAAGAAAAGCTTTTCTTGCAACCCCTAAGCATCAATGCCTTGTATCGTAA
258 TATCAAAAACAGTTGCAAGAAAAGCTTTTCTTGCGA-CCCAAAGCATCAATGTCATGTATCCTAA
*
1933061 TGAAGGGAATGTGTTTTTGGTCCCCAAT
322 TGAAGGGAATGTGTTTTTGGTTCCCAAT
1933089 TGATGAAAAC
Statistics
Matches: 2752, Mismatches: 374, Indels: 117
0.85 0.12 0.04
Matches are distributed among these distances:
461 2 0.00
462 218 0.08
463 149 0.05
465 23 0.01
466 2 0.00
471 11 0.00
472 544 0.20
473 281 0.10
474 311 0.11
475 351 0.13
476 845 0.31
477 15 0.01
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (473 bp):
TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATC
CATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCT
TGCGAAACCAAAGCATCAATTCATCTATCCTAATGAGAAGACTATGTTTATGGTGCCAAATCCTT
AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
CAAAAACAGTTGCAAGAAAAGCTTTTCTTGCGACCCAAAGCATCAATGTCATGTATCCTAATGAA
GGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGTAGGCTATTATGAGAATCAATGCTTGCC
TTATTTATGGGATGAACTCGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAA
AACCATCAATATCATTTA
Found at i:1933976 original size:12 final size:11
Alignment explanation
Indices: 1933954--1934029 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
1933944 AATACAAGAA
*
1933954 GAGAGAGGAGG
1 GAGATAGGAGG
1933965 GATGATAGGAGG
1 GA-GATAGGAGG
*
1933977 AGAGACAGGA--
1 -GAGATAGGAGG
*
1933987 GAGATAGTA--
1 GAGATAGGAGG
1933996 GAGATAGGAGG
1 GAGATAGGAGG
1934007 GATGATAGGAGG
1 GA-GATAGGAGG
*
1934019 AGAGACAGGAG
1 -GAGATAGGAG
1934030 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:1933986 original size:24 final size:24
Alignment explanation
Indices: 1933953--1934038 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
1933943 GAATACAAGA
*
1933953 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
1933977 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
1933995 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
1934019 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
1934039 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:1934012 original size:42 final size:42
Alignment explanation
Indices: 1933953--1934062 Score: 193
Period size: 42 Copynumber: 2.6 Consensus size: 42
1933943 GAATACAAGA
*
1933953 AGAGAGAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAGT
1 AGAGAGAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAAT
*
1933995 AGAGATAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAAT
1 AGAGAGAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAAT
*
1934037 AGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGAGAGGAGGGATGATAGGAGGAG
1934063 GAGAGAAGAA
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 64 1.00
ACGTcount: A:0.41, C:0.03, G:0.47, T:0.09
Consensus pattern (42 bp):
AGAGAGAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAAT
Found at i:1940296 original size:299 final size:298
Alignment explanation
Indices: 1939671--1940567 Score: 1440
Period size: 298 Copynumber: 3.0 Consensus size: 298
1939661 TTGTAGGCTG
* * * * *
1939671 TTACGAAAATGAATGCTTGCCCTATTTAAGGGATAAACATCGATTTCAAGGAAAATAGGGCAAAG
1 TTACGAGAATCAATGCTTGCCTTATTTAAGAGATAAACATCGATTTTAAGGAAAATAGGGCAAAG
* * * *
1939736 AAAAGATTTTCATGCAAAAAAAAACCATCAATACCATTTATCCTAATGAGGAGAATGTGTTTGCA
66 AAAAGATTTTCAAGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACA
* * * * *
1939801 GTGCCC-ATCACAAAAAGAATAAAGATCATTACTAGAATCCATGTTTGCCTCATTTGA-GGCACG
131 GTGCCCAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTAATTT-ACGGCATG
* **
1939864 AACTCAAACTTTACAAAAGTTGGTGGGAAGAATCCTTTCTTACAAAACTAAAGAGTCAATATCAT
195 AACTCAAACTTTACAAAAATTGGTGGGAAGAATCCTTTCTTATGAAACTAAAGAGTCAATATCAT
*
1939929 GTATCTTTATGAGAAGACTAAGTTTATGGTGCGTAATCC
260 GTATCCTTATGAGAAGACTAAGTTTATGGTGCGTAATCC
* *
1939968 TTACGAGAATCAATGCTTGCCTTATTTAAGAGATAAACATCAATTTTAAGGAAATTAGGGCAAAG
1 TTACGAGAATCAATGCTTGCCTTATTTAAGAGATAAACATCGATTTTAAGGAAAATAGGGCAAAG
*
1940033 AAAACATTTTCAAGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACA
66 AAAAGATTTTCAAGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACA
* *
1940098 GTGCCCAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTAATTTACAGCTTGA
131 GTGCCCAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTAATTTACGGCATGA
1940163 ACTCAAACTTTACAAAAATTGGTGGGAAGAATGCCTTTCTTATGAAACTAAAGAGTCAATATCAT
196 ACTCAAACTTTACAAAAATTGGTGGGAAGAAT-CCTTTCTTATGAAACTAAAGAGTCAATATCAT
* * *
1940228 TTATCCTTATGAGAAGACTAAGTTTATGGTTCATAATCC
260 GTATCCTTATGAGAAGACTAAGTTTATGGTGCGTAATCC
* *
1940267 TTACGAGAATTAATGCTTTCCTTATTTAAGAGATAAACATCGATTTTAAGGAAAATAGGGCAAAG
1 TTACGAGAATCAATGCTTGCCTTATTTAAGAGATAAACATCGATTTTAAGGAAAATAGGGCAAAG
* *
1940332 AAAAGATTTTCAAGCAAAAGAAAACCATCAATTTCATTTATCCTAATGAGGAGAATGTGTTTATA
66 AAAAGATTTTCAAGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACA
*
1940397 GTGCCCAATCAC-AAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTAATTTGCGGCATGA
131 GTGCCCAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTAATTTACGGCATGA
* * *
1940461 ACTCAAACTTTACAAAAATTGGTGGGAAGAATACCTTTCTTTTGAAACTAAAAAGTTAATATCAT
196 ACTCAAACTTTACAAAAATTGGTGGGAAGAAT-CCTTTCTTATGAAACTAAAGAGTCAATATCAT
1940526 GTATCCTTATGAGAAGACTAAGTTTATGGTGCGTAATCC
260 GTATCCTTATGAGAAGACTAAGTTTATGGTGCGTAATCC
1940565 TTA
1 TTA
1940568 AAAGAATGGG
Statistics
Matches: 554, Mismatches: 43, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
297 125 0.23
298 229 0.41
299 200 0.36
ACGTcount: A:0.38, C:0.15, G:0.16, T:0.30
Consensus pattern (298 bp):
TTACGAGAATCAATGCTTGCCTTATTTAAGAGATAAACATCGATTTTAAGGAAAATAGGGCAAAG
AAAAGATTTTCAAGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACA
GTGCCCAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTAATTTACGGCATGA
ACTCAAACTTTACAAAAATTGGTGGGAAGAATCCTTTCTTATGAAACTAAAGAGTCAATATCATG
TATCCTTATGAGAAGACTAAGTTTATGGTGCGTAATCC
Found at i:1941169 original size:476 final size:475
Alignment explanation
Indices: 1940271--1942139 Score: 2404
Period size: 476 Copynumber: 3.9 Consensus size: 475
1940261 TAATCCTTAC
* * *
1940271 GAGAATTAATGCTTTCCTTATTTAAGAGATAAACATCGATTTTAAGGAAAATAGGGCAAAGAAAA
1 GAGAATCAATGCTTGCCTTATTTAAGGGATAAACATCGATTTTAAGGAAAATAGGGCAAAGAAAA
* *
1940336 GATTTTCAAGCAAAAGAAAACCATCAATTTCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
66 GATTTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* * ** *
1940401 CCAATCACAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTAATTTGCGGCATGAACTCA
131 CCAATCACAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTA
* * * *
1940466 AACTTTACAAAAATTGGTGGGAAGAATA-CCTTTCTTTTGAAACTAAA-AAGTTAATATCATGTA
196 AACTTTACAAAAATTGGTGGGAAGAA-AGCCTTTCTTGTGAAACCAAAGAAGTCAATATCATCTA
* ** *
1940529 TCCTTATGAGAAGACTAAGTTTATGGTGCGTAATCCTTAAAAGAATGGGGATTAGTTTGAGTATT
260 TCCTAATGAGAAGACTAAGTTTATGGTGCCAAATCCTTAAAAGAATGGGGATTAGTATGAGTATT
* * *
1940594 CTTGTTTGTCTTATTTTAGAGACAAACTTTGATTCTATCAAAAACGGTTGCAAGAAAAGCTTTTC
325 CATGTTTGTCTTAATTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGCAAGAAAAGCTTTTC
*
1940659 TTGCGACCCCAAAGCATCAATATCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCTAATCT
390 TTGCGACCCCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCC-AATCT
1940724 CGAAAAGAATGGAGACTGTTAA
454 CGAAAAGAATGGAGACTGTTAA
* *
1940746 GAGAATCAATGCTTGCCTTATTTATGGGATGAAC-TACGATTTTAAGGAAAATAGGGCAAAGAAA
1 GAGAATCAATGCTTGCCTTATTTAAGGGATAAACAT-CGATTTTAAGGAAAATAGGGCAAAGAAA
* * *
1940810 AGATTTTCATGCAAAAGAAAACCATCTATATCATTTCTCCTAAAGAGGAGAATGTGTTTATAGTG
65 AGATTTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTG
* * *
1940875 CCTAATCACCAAATGAATGAAGATTATTACTTGAATCCATGTTTGTCTCATTTGAGGCACAAACT
130 CCCAATCA-CAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACT
* ** * *
1940940 TAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCA-TCAAT-TTAGTC
194 TAAACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGAAGTCAATATCA-TC
** * *
1941003 TATCCTAATGAGAAGACTTTGTTTATGGTGCCAAATCCTTAAAAGAATGAGGATTAGTATGGGTA
258 TATCCTAATGAGAAGACTAAGTTTATGGTGCCAAATCCTTAAAAGAATGGGGATTAGTATGAGTA
* ** * * *
1941068 TTCATGTTTGTCGTAATTATTAGACAAACTTTGATTCTATAAAAAACGG-TGGAAGGAAAACCTT
323 TTCATGTTTGTCTTAATTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGCAA-GAAAAGCTT
* * * * * *
1941132 TTCTTGCGACACCAAAGCGTTAATGTCATGTATCCTAATGAA-AGAAAGT-TCAATTTATGGGAT
387 TTCTTGCGACCCCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGT---TTT-T-GGTT
* *
1941195 -CAA-CTTC-AATTTTAAGAATGGAGACTATTAG
447 CCAATC-TCGAA----AAGAATGGAGACTGTTAA
* * * * *
1941226 GAGAATCAAAGCTTGCCTTATTTATGGGATCAACTTCAATTTTAAGGAAAATAGGGCAAAGAAAA
1 GAGAATCAATGCTTGCCTTATTTAAGGGATAAACATCGATTTTAAGGAAAATAGGGCAAAGAAAA
* * * * *
1941291 GATTTTCATGTAAAAGAAAACCATCATTATCATTTATACTAATGAGGAGAATGTATTTTTAGTGC
66 GATTTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* * * * *
1941356 CTAATCACAAATTGAATGTAGATCATTATTGGAATCCATGTTTGTCTCACTTTAAGGCACAAACT
131 CCAATCACAAA-TGAATGAAGATCATTACTAGAATCCATGTTTGTCTCA-TTTGAGGCACAAACT
* * * * * * *
1941421 TAGACTTTACAAAAATTGATGGGAAGAAAGTCTTCCTTGTGAAACCAAAGCA-TCAATTTCGTCT
194 TAAACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGAAGTCAATATCATCT
* * * *
1941485 ATCCAAATGAGAAGACTATGTTTATGGTG-CATAACCCTTAAAAGAATTGGGATTAGTATGAGTA
259 ATCCTAATGAGAAGACTAAGTTTATGGTGCCA-AATCCTTAAAAGAATGGGGATTAGTATGAGTA
* * * * *
1941549 TTCCTGTTTGTCTTATTTAAGAGACAAACTTTGATTTTGTCAAAAACGGGTGCAAGAAAAGCTTT
323 TTCATGTTTGTCTTAATTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGCAAGAAAAGCTTT
* * * *
1941614 TCTTGCAACCCCAAAGCATCAATGCCATGTATCGTAATGAAGGGAATATGTTTTTGGTTCCCAAT
388 TCTTGCGACCCCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTT-CCAAT
* * * * *
1941679 C-CTGTAAATATTGTCAG-CTGTTAT
452 CTC-GAAAAGAATG-GAGACTGTTAA
* *
1941703 GAGAATCAATGGTTGCCTTATATAAGGGATAAACATCGATTTTAAGGAAAATAGGGCAAAGAAAA
1 GAGAATCAATGCTTGCCTTATTTAAGGGATAAACATCGATTTTAAGGAAAATAGGGCAAAGAAAA
* *
1941768 GATTTTCATGCAAAAGAAAACCATCAATATCATTTATTCTAATGAGGAGAATTTGTTTATAGTGC
66 GATTTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* *
1941833 CCAATCACAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTT
131 CCAATCAC-AAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTT
* * *
1941898 AAACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTATGAAA-CAAAAAAGTCAATATCATGTA
195 AAACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGAAGTCAATATCATCTA
* **
1941962 TCC-ATATGAGAAGACTAAGTTTTTGGTGCGTAATCCTTAAAAGAATGGGGATTAGTATGAGTAT
260 TCCTA-ATGAGAAGACTAAGTTTATGGTGCCAAATCCTTAAAAGAATGGGGATTAGTATGAGTAT
* * * *
1942026 TCATATTGGTCTTATTTAAGAGAGAAACTTTGATTCTATCAAAAACGGTTGCAAGAAAAGCTTTT
324 TCATGTTTGTCTTAATTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGCAAGAAAAGCTTTT
* *
1942091 CTTGGGACCCCAAAGCATCAATGTCATGTATCGTAATGAAGGGAATGTG
389 CTTGCGACCCCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG
1942140 ATGAAAATCA
Statistics
Matches: 1206, Mismatches: 154, Indels: 67
0.85 0.11 0.05
Matches are distributed among these distances:
474 2 0.00
475 142 0.12
476 464 0.38
477 176 0.15
478 10 0.01
479 9 0.01
480 181 0.15
481 212 0.18
482 9 0.01
483 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (475 bp):
GAGAATCAATGCTTGCCTTATTTAAGGGATAAACATCGATTTTAAGGAAAATAGGGCAAAGAAAA
GATTTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
CCAATCACAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTA
AACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGAAGTCAATATCATCTAT
CCTAATGAGAAGACTAAGTTTATGGTGCCAAATCCTTAAAAGAATGGGGATTAGTATGAGTATTC
ATGTTTGTCTTAATTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGCAAGAAAAGCTTTTCT
TGCGACCCCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCAATCTCG
AAAAGAATGGAGACTGTTAA
Found at i:1943788 original size:12 final size:11
Alignment explanation
Indices: 1943766--1943841 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
1943756 AGAGAAAGAA
*
1943766 GAGAGAGGAGG
1 GAGATAGGAGG
1943777 GATGATAGGAGG
1 GA-GATAGGAGG
*
1943789 AGAGACAGGA--
1 -GAGATAGGAGG
*
1943799 GAGATAGTA--
1 GAGATAGGAGG
1943808 GAGATAGGAGG
1 GAGATAGGAGG
1943819 GATGATAGGAGG
1 GA-GATAGGAGG
*
1943831 AGAGACAGGAG
1 -GAGATAGGAG
1943842 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:1943798 original size:24 final size:24
Alignment explanation
Indices: 1943765--1943850 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
1943755 AAGAGAAAGA
*
1943765 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
1943789 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
1943807 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
1943831 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
1943851 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:1943817 original size:42 final size:42
Alignment explanation
Indices: 1943756--1943874 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
1943746 TAGCCCTCAA
* *
1943756 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
1943798 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
1943840 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
1943875 GAGAGAAGAA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.43, C:0.03, G:0.46, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:1951333 original size:159 final size:158
Alignment explanation
Indices: 1950699--1951341 Score: 389
Period size: 159 Copynumber: 4.1 Consensus size: 158
1950689 ACGGTGGAAG
* * ** * * *
1950699 GAAAACCTTTTCTTGTGCCACCAAAGCATCAATGTCATGTATCCTAACGAAGGGAATGTGTTT-T
1 GAAAAGCTTTTCTTGCGAAACCAAAGCATCAATGTCAAGTATCCTAATGAAAGGAATGTGTTTAT
* * * * * ** *
1950763 TGTTCCCAATCTTTAAAAAATGGAGATTATTAAGAGAATCAAT-CCTACCTTATTTATGGGATGA
66 GGTGCCCAATCTTGAAAAAATGGAGATTATTATGAGAATCAATGCTTGTCTTATTTAAGGGATGA
* * *
1950827 ACTACGATTTTAAGGAAAATAGGGTAAA
131 ACTTCAATTTTAAGGAAAATAGGGCAAA
** * * ** * * ** *
1950855 GAAAATATTTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAATG--TGGAAAATGTGTTT
1 GAAAAGCTTTTCTTGCGAAACCAAAGCATCAATGTCAAGTATCCTAATGAAAGG--AATGTGTTT
* * *** * * * * * * *
1950918 ATAGTGCCTAATCACCAAATAAATGAAGATTATTACT-TGAATCCATGTTTGTCTCATTTGAGGC
64 ATGGTGCCCAATCTTGAAA-AAATGGAGATTATTA-TGAGAATCAATGCTTGTCTTATTTAAGGG
* * **
1950982 ATGAACTT-AGACTTTACA--AAAATTGGTGGGAA
127 ATGAACTTCA-ATTTTA-AGGAAAATAGG-GCAAA
* * **
1951014 G-AAAGCCTTTCTTGCGAAACCAAAGCATCAAT-T-TAGTCTATCCTAATGAGAA-GACA-AAGT
1 GAAAAGCTTTTCTTGCGAAACCAAAGCATCAATGTCAAG--TATCCTAATGA-AAGGA-ATGTGT
* * * * * *
1951074 TTATGGTGCCAAATCCTGAAAAAAATGGGGATTAGTATGAGTATTC-ATGTTTGTCTTATTTAAG
62 TTATGGTGCCCAATCTTG-AAAAAATGGAGATTATTATGAG-AATCAATGCTTGTCTTATTTAAG
* ** ** * *** * *
1951138 AGACAAACTTTGATTCTATCAAAAACAGTTGC-AA
125 GGATGAACTTCAATTTTAAGGAAAATAG-GGCAAA
* * *
1951172 GAAAAGCTTTTCTTGTGACACCAAGGCATCAATGTCAAGTATCCTAATGAAAGGAATGTGTTTAT
1 GAAAAGCTTTTCTTGCGAAACCAAAGCATCAATGTCAAGTATCCTAATGAAAGGAATGTGTTTAT
* * *
1951237 GGTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATTAATGCTTGTCTTATTTAAGGGATG
66 GGTGCCCAATCTTGAAAA-AATGGAGATTATTATGAGAATCAATGCTTGTCTTATTTAAGGGATG
1951302 AACTTCAATTTTAAGGAAAATAGGGCAAA
130 AACTTCAATTTTAAGGAAAATAGGGCAAA
*
1951331 GAAAAGATTTT
1 GAAAAGCTTTT
1951342 TATGCAAAAG
Statistics
Matches: 353, Mismatches: 104, Indels: 57
0.69 0.20 0.11
Matches are distributed among these distances:
154 2 0.01
156 45 0.13
157 14 0.04
158 130 0.37
159 157 0.44
160 3 0.01
161 2 0.01
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (158 bp):
GAAAAGCTTTTCTTGCGAAACCAAAGCATCAATGTCAAGTATCCTAATGAAAGGAATGTGTTTAT
GGTGCCCAATCTTGAAAAAATGGAGATTATTATGAGAATCAATGCTTGTCTTATTTAAGGGATGA
ACTTCAATTTTAAGGAAAATAGGGCAAA
Found at i:1951483 original size:476 final size:476
Alignment explanation
Indices: 1948853--1959839 Score: 9357
Period size: 476 Copynumber: 23.1 Consensus size: 476
1948843 GTTGTCATCA
* * * * * * * * *
1948853 GAATGTGTTTTTGGTTCCC-ATCCTGATAATATTGTAGGCTGTTACGAGTATCAATGCTTGCCTT
1 GAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTAAGAGAATCAATGCTTGCCTT
* * * * * *
1948917 ATTTAAGGGATAAACATCAATTTAAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAAAAA
66 ATTTATGGGATGAACTTCGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAA
* * * * *
1948982 ACCATCAATATCGTTTATCGTAATGAGGTGAATGTGTTTACT-CTGTCC-AATCACAAAATGATT
131 ACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA-TAGTG-CCTAATCACAAAATGAAT
* * * *
1949045 GAAGATCATTAATAGAATCCATATTTGTCACATTTGAGGCACGAACTTAGAC-TTAGCAAAAATT
194 GAAGATTATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTA-CAAAAATT
* * * * * *
1949109 GGTGGCAAGAAAGTCTTTCTTGCGAATCTAAGGCATCAATTTTGTCTATCCTAATGAGAAGACTA
258 GGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATTTAGTCTATCCTAATGAGAAGACTA
* * * *
1949174 TGTTTATGGTGCCAAATCCTG-AAAGAAATAGGGATTAGTATGAGTATTCAAGTTTGTCTTAATT
323 AGTTTATGGTGCCAAATCCTGAAAAG-AATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTT
* * * * * * *
1949238 AAGAGACAAACTTTGATTTTATCAAAAAC-GGTGGAGGGAAAACCTTTTCTTGCAACACCAAGGC
387 AAGAGACAAACTTTGATTCTATCAAAAACAGTTGCA-AGAAAAGCTTTTCTTGCGACACCAAAGC
**
1949302 ATCAATGTCATGTATCCTAACAAAGG
451 ATCAATGTCATGTATCCTAATGAAGG
* * *
1949328 GAATGTGTTTTT-GTTCCCAATCTTGAAAA-AATGGACATTGTTAAGAGAATCAATGCTTGCCTT
1 GAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTAAGAGAATCAATGCTTGCCTT
* * * *
1949391 ATTTATGGGATGAACTACGATTATAAGGAAAATAGGGCAAAGAAAGGATTTTCATGCAAAATAAA
66 ATTTATGGGATGAACTTCGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAA
** * * *
1949456 ACCATCTCTATCATTTATCCTAATGAGAAGAATGTGTTTATAGTGACTAATCACTAAATGAATGA
131 ACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
* *** * *
1949521 AGATTATTACTTGAATTTGTGTTTGTCTCATTTAAGGCACGAACTTAGACTTTACAAAAATTGGC
196 AGATTATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT
* * * * *
1949586 GGGAAGAAA-CCTTTTCTTGAGAAACCAAACCAACAATTTAGTCTATTCTAATGAGAAGACTATG
261 GGGAAGAAAGCC-TTTCTTGCGAAACCAAAGCATCAATTTAGTCTATCCTAATGAGAAGACTAAG
* * * *
1949650 TTTATGGTGCCAAATCCTGAAAAGAATGGGGATTAGTACGAGTATTCAAGTTTGACTTATTTATG
325 TTTATGGTGCCAAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAG
* *
1949715 AGACAAACTTTGATTCTATCAAAAACAGTTGCAAGAAAAGCTTTTCTTGTGACACCAAATCATCA
390 AGACAAACTTTGATTCTATCAAAAACAGTTGCAAGAAAAGCTTTTCTTGCGACACCAAAGCATCA
* *
1949780 ATGTCGTGTATCCT-ATGAAAG
455 ATGTCATGTATCCTAATGAAGG
* * * * * * * *
1949801 GAATGTGCTTATGGCTCCCAATCTTGAACAGAATGGACACTATTATGAGAATTAATGCTTGGCTT
1 GAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTAAGAGAATCAATGCTTGCCTT
1949866 ATTGT-TGGGATGAACTAT-GATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGA
66 ATT-TATGGGATGAACT-TCGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGA
*** * * * * *
1949929 AAATTGTCTATGTCATTT-CCCTTAATGAGGAGAACGTTTTTATAGTGCCTAATCACAAAATGAA
129 AAACCATCAATATCATTTATCC-TAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
* * * *
1949993 TGAAGATCATTACTAGAATCCATGTTTGTCTCACTTGAGGCATGAATTTAGACTTTACAAAAATT
193 TGAAGATTATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATT
* * * * * * *
1950058 GGTAGGAAGAAAGCTTTTCATGCAAAACCAAAGCATCCATTTCGTCTTTCCTAATGAGAAGACTA
258 GGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATTTAGTCTATCCTAATGAGAAGACTA
* * ** * * * *
1950123 TGTTTATCGTGCGTAACCCAT-AAAAGAATGGGGGTTAGTATGACTATTCATGTGTGTCTTATTT
323 AGTTTATGGTGCCAAATCC-TGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTT
1950187 AAGAGGA-AAACTTTGATTCTATCAAAAACAGTTGCAAGAAAAGCTTTTCTTGC-A-ATCTCAAA
387 AAGA-GACAAACTTTGATTCTATCAAAAACAGTTGCAAGAAAAGCTTTTCTTGCGACA-C-CAAA
* *
1950249 GCATCAATCTCATGTATCGTAATGAAGG
449 GCATCAATGTCATGTATCCTAATGAAGG
* * * ** ** * * *
1950277 GAATGCGTTTTTGGTTCCCAATCTTGAAAATATTATAGGTTGTTAGGAGAATCAATTCTTGCCTT
1 GAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTAAGAGAATCAATGCTTGCCTT
* * * * *
1950342 ATTTATGGGGTAAACATT-GACTTTAAAGAAAATAGGGCAATGAAAAGATTTTCATGCAAAA-AA
66 ATTTATGGGATGAAC-TTCGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAA
* * * * * *
1950405 AACCATCAATATCATTTATCTTAGTGAGGAGAATGCGCTTACAGTGCCTAATAACAAAATGAATG
130 AACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
* * * * *
1950470 AAGATCATTATTAGAATCCAT-TCTTGTCTCATTTGAGGCACGGAC-TAAATTTTTACAAAAATT
195 AAGATTATTACTAGAATCCATGT-TTGTCTCATTTGAGGCACGAACTTAGA-CTTTACAAAAATT
* * * * * ** *
1950533 GGTGGGAAGAAAGCCATTCTTACGAAACTAAAG-AGTCAATATCA-TGTATCCTTTTAAGAA-AT
258 GGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCA-TCAAT-TTAGTCTATCCTAATGAGAAGA-
** * * * * * *
1950595 CTAAGTTTATGGTGCGTAATCCTTAAAAGAAAGGGGACTAGGAAGAGTATTCATGTTTGTCTTAA
320 CTAAGTTTATGGTGCCAAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTAT
* * * * *
1950660 TTAAGAGACAAACTTTGATTCTATCAAAAAC-GGTGGAAGGAAAACCTTTTCTTGTGCCACCAAA
385 TTAAGAGACAAACTTTGATTCTATCAAAAACAGTTGCAA-GAAAAGCTTTTCTTGCGACACCAAA
*
1950724 GCATCAATGTCATGTATCCTAACGAAGG
449 GCATCAATGTCATGTATCCTAATGAAGG
* * * *
1950752 GAATGTGTTTTT-GTTCCCAATCTTTAAAA-AATGGAGATTATTAAGAGAATCAAT-CCTACCTT
1 GAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTAAGAGAATCAATGCTTGCCTT
* * *
1950814 ATTTATGGGATGAACTACGATTTTAAGGAAAATAGGGTAAAGAAAATATTTTCATGCAAAAGAAA
66 ATTTATGGGATGAACTTCGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAA
* * * *
1950879 ACCATCAATATCATTTATCCTAATGTGGAAAATGTGTTTATAGTGCCTAATCACCAAATAAATGA
131 ACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
* *
1950944 AGATTATTACTTGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGT
196 AGATTATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT
*
1951009 GGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATTTAGTCTATCCTAATGAGAAGACAAAGT
261 GGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATTTAGTCTATCCTAATGAGAAGACTAAGT
*
1951074 TTATGGTGCCAAATCCTGAAAAAAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGA
326 TTATGGTGCCAAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGA
* *
1951139 GACAAACTTTGATTCTATCAAAAACAGTTGCAAGAAAAGCTTTTCTTGTGACACCAAGGCATCAA
391 GACAAACTTTGATTCTATCAAAAACAGTTGCAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAA
* *
1951204 TGTCAAGTATCCTAATGAAAG
456 TGTCATGTATCCTAATGAAGG
* * * *
1951225 GAATGTGTTTATGGTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATTAATGCTTGTCTT
1 GAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTAAGAGAATCAATGCTTGCCTT
* * *
1951290 ATTTAAGGGATGAACTTCAATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTTATGCAAAAGAAA
66 ATTTATGGGATGAACTTCGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAA
** * * * * *
1951355 ACCATCTCTATCATTTCTCCTAGTTAGGAGAATGTGTTCATTGTGCCTAATCACAAAATGAATGA
131 ACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
* * * ** * *
1951420 TGATTTTTACCAGAATCTGTGTTTGTCTCACTTGAGGCATGAACTTAGACTTTACAAAAATTGGT
196 AGATTATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT
*
1951485 AGGG-AGAAAGCCTTTCTTGCGAAACCAAAGCATCAATTTTGTCTAT-C-----------CT-A-
261 -GGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATTTAGTCTATCCTAATGAGAAGACTAAG
1951535 ---ATGGTGCCAAATCCTGAAAAGAATGGGG---A-T-T-AGTATTCATGTTTGTCTTATTTAAG
325 TTTATGGTGCCAAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAG
* * * * * *
1951591 AGAAAAACTTTGATTCTATAAAAAACGGTTG-AAGGAAAACCTTTTCTTGCTATACCAAAGCATC
390 AGACAAACTTTGATTCTATCAAAAACAGTTGCAA-GAAAAGCTTTTCTTGCGACACCAAAGCATC
**
1951655 AATGTCATGTATCCTAGCGAAGG
454 AATGTCATGTATCCTAATGAAGG
* * * *
1951678 GAATGTGTTTTTGGTTCCAAATCCTGAATAGAATGGAGACTGTTAAGAGAATCAATGCTTGCCTT
1 GAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTAAGAGAATCAATGCTTGCCTT
* * * *
1951743 ATTTATGGGATGAACTACGATTTTTAAGCAAAATAGGGTAAAGAAAAGATTTTTATGCAAAAGAA
66 ATTTATGGGATGAACTTCGA-TTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAA
* * *
1951808 AACCATCAATATCATTTATCTTAATGAGGAGAATTTGTTTATAGTGCCTAATCACCAAATGAATG
130 AACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
* * * * * * * *
1951873 AAGATTATTACTTGAATCCACGTTTGCCTCATTTGTGACACGAACATAGACGTTACAAAATTTGG
195 AAGATTATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG
* * * * *
1951938 TAGGAAGAAAGCCTTTCTTACAAAACTAAAGCATCAATTTAGTCTATCCTAATGAGAAGACTATG
260 TGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATTTAGTCTATCCTAATGAGAAGACTAAG
* * *
1952003 TTTGTGGTGCCAAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGCCTTACTTAAG
325 TTTATGGTGCCAAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAG
* * * * * *
1952068 AGACAAACATTGATTCTATCAAAAATAGTTGCAAGAAAAGCTTTTCTTGCGACCCCGAAGTATCG
390 AGACAAACTTTGATTCTATCAAAAACAGTTGCAAGAAAAGCTTTTCTTGCGACACCAAAGCATCA
* *
1952133 ATGTCATGCATCCTAATGAAAG
455 ATGTCATGTATCCTAATGAAGG
* * * * *
1952155 GAATATGTTTATGGTTCCTAATCTTGAAAAGAATTGAGACTATTATGAG---C-A------CCTT
1 GAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTAAGAGAATCAATGCTTGCCTT
* * * * * *
1952210 ATTTAAGGGATGAACTTCAATTTTAA-AAAAAGTAGGGCAAAGAGAAGATTTTCAAGCAAATGAA
66 ATTTATGGGATGAACTTCGATTTTAAGGAAAA-TAGGGCAAAGAAAAGATTTTCATGCAAAAGAA
* * * * * *
1952274 AACCAACAATATGATTTATACTAATGAGGAGATTGTGTTTTTAGTGCCTAATCACAAAATAAATG
130 AACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
* * * * *
1952339 AAGCTCATTACTAGAATCCATGTTTGTCCCATTTGAGGCACGAACTCAAACTTTACAAAAATTGG
195 AAGATTATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG
* * * ** *
1952404 TGGGAAGAAAGCCTTTCTTAG-GAAACTAAAG-AGTCAATATCA-TGTATCCTTTCTGAGAAGAA
260 TGGGAAGAAAGCCTTTCTT-GCGAAACCAAAGCA-TCAAT-TTAGTCTATCC-TAATGAGAAGAC
* ** * *
1952466 AAAGTTTATGGTGCGTAATCCTTAAAAGAATGGGGATTAGTATGAGTATTGATGTTTGTCTTATT
321 TAAGTTTATGGTGCCAAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATT
* * * ** * *
1952531 TAAGAGATAAACTTTGATTTTACCAAAAATGGTTGCAAGAAAAGCTTTTCTTGCGGCCCCAAAGC
386 TAAGAGACAAACTTTGATTCTATCAAAAACAGTTGCAAGAAAAGCTTTTCTTGCGACACCAAAGC
*
1952596 ATCAATGTCATGTATCCTAATGAAAG
451 ATCAATGTCATGTATCCTAATGAAGG
* * * * *
1952622 GAATGTGTTTTTGGTTTCCAATCCTGAAAAGAATGGAGACTGTTAAGAGAATCAATGCTTTCCAT
1 GAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTAAGAGAATCAATGCTTGCCTT
* * * **
1952687 ATTTATGGGATGAACTACGATTTTAAGGAAAATAAGGCAAAGAAAAAATTTTCACACAAAAGAAA
66 ATTTATGGGATGAACTTCGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAA
* * * * *
1952752 ACCATCTATATCATTTCTCCAAAGGAGGAGAATGTGTTTATAGTGCCTAATTACAAAATGAATGA
131 ACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
* ** * * * *
1952817 AGGTCGTTGCTAGAATCCAAGTTTATCTCATTTGAGGCACGAACTTAGA-GTTAGCAAAAATTGG
196 AGATTATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTA-CAAAAATTGG
* * * * * * * *
1952881 TGGCAAGAAAGTCTTTCTTGCGAATCCAAAGCATCAATTTTGTCTGTCCTAATAAGAAAACTATG
260 TGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATTTAGTCTATCCTAATGAGAAGACTAAG
*
1952946 TTTATGGTGCCAAAT-CTAGAAAAGAATGGGGATTAGTAT-A--A--C---TAT-TC--A-TTAA
325 TTTATGGTGCCAAATCCT-GAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAA
* *** * * * **
1952998 GAGACAAACTTTGATTCTACCAAAAGTGGTTG-AAGGAAAACCATTTCTTGCAACACCAAAGTGT
389 GAGACAAACTTTGATTCTATCAAAAACAGTTGCAA-GAAAAGCTTTTCTTGCGACACCAAAGCAT
* *
1953062 CAATGTCATGTATTCTAACGAAGG
453 CAATGTCATGTATCCTAATGAAGG
* * *
1953086 GAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTAAGAGAATCTATGCTTGCCAT
1 GAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTAAGAGAATCAATGCTTGCCTT
* *
1953151 ATTTAAT-GGATGAATTTCGATTTTGAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAA
66 ATTT-ATGGGATGAACTTCGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAA
* *
1953215 AACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAACCACCAAATGAATG
130 AACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
* *
1953280 AAGATTATTACTTGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGG
195 AAGATTATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG
** * * * * *
1953345 TAAGAAGAAAGCCTCTCTCGTGAAACCAAAGCATCAATTTAGTCTATCCTAAAGAGAAGACTATG
260 TGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATTTAGTCTATCCTAATGAGAAGACTAAG
* * **
1953410 TTTATGGTGCCAAATCCTAAAAAGAATGGGGATTAGTATAAGTATTCATGTTTACCTTATTTAAG
325 TTTATGGTGCCAAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAG
*
1953475 AGACAAACTTTGATTCTATCAAAAACAGTTGCAAGAAAAGCTTTTCTTGTGACACCAAAGCATCA
390 AGACAAACTTTGATTCTATCAAAAACAGTTGCAAGAAAAGCTTTTCTTGCGACACCAAAGCATCA
*
1953540 ATGTCATGTATCCTAATGAAAG
455 ATGTCATGTATCCTAATGAAGG
* * * *
1953562 GAATGTGTTTATGATTCCCAATCTTGAAAAGAATGGAGACTATTATGAGTATCAATGCTTGCCTT
1 GAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTAAGAGAATCAATGCTTGCCTT
* * *
1953627 ATTTAAGGGATGAACTTCGATTTTAAGGAAAATAGGGAAAAGAAAAGATTTTCATTCAAAAGAAA
66 ATTTATGGGATGAACTTCGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAA
* * * * * * *
1953692 ACCATCAATATCATTTATACTAATGAGGAGAATGTATTTTTGGTGCCTAATAACAAATTGAATGT
131 ACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
* *
1953757 AGATTATTACTGGAATCCATGTTTGTCTCACTTGAGGCACGAACTTAGACTTTACAAAAATTGGT
196 AGATTATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT
* * * * * * *
1953822 GGCAAGAAAGCTTTTCGTGCGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAAACTATGT
261 GGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATTTAGTCTATCCTAATGAGAAGACTAAGT
*** * * ** * * *
1953887 TTATGGTGTGTAACCCTAAAAAGAATTAGGATTAGGATGAGTATTCATGTTTGTCTTAATTAGGA
326 TTATGGTGCCAAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGA
* * * *
1953952 GACAAACTTTGATTCTATCAAAAAC-GGTGGAAGGAAAACCTTTTCTTGTGACACCAAAGCATCA
391 GACAAACTTTGATTCTATCAAAAACAGTTGCAA-GAAAAGCTTTTCTTGCGACACCAAAGCATCA
*
1954016 ATGTCATGTATCCTAACGAAGG
455 ATGTCATGTATCCTAATGAAGG
* *
1954038 GAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGGGACTATCAAGAGAATCAATGCTTGCCTT
1 GAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTAAGAGAATCAATGCTTGCCTT
* *
1954103 ATGTATGGGATGAACTTCGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGTAAAAGAAA
66 ATTTATGGGATGAACTTCGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAA
* * * *
1954168 ACCATCAATATCACTTATACTAATGAGGAGAATGTGTTTTTAGTGCCTAATCACAAAATGAATGT
131 ACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
* * * * *
1954233 AGATTATTA-TGGGAATTCTTGTTTGTCTCACTTGAGGCACAAACTTAGACTTTACAAAAATTGG
196 AGATTATTACT-AGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG
*** *
1954297 TGGGAAGAAAGCCTTTCTTATTAAACCAAAGCATCAATTTCGTCTATCCTAATGAGAAGACTATA
260 TGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATTTAGTCTATCCTAATGAGAAGACTA-A
** * * * * * *
1954362 -TTTATGGTGCGTAACCCTTAAAAGAATAGGAATCAGTATGAGTATTCATGTATGTCTTATTTAA
324 GTTTATGGTGCCAAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAA
* * * * *
1954426 GAGATAAACTTTGATTCTGTCAAAAACGGTTGCAAGAAAAGCTTTTCTTGCAACCCCAAAGCATC
389 GAGACAAACTTTGATTCTATCAAAAACAGTTGCAAGAAAAGCTTTTCTTGCGACACCAAAGCATC
* *
1954491 AATGTCATGTATCATAATGAGGG
454 AATGTCATGTATCCTAATGAAGG
* * * * * * * *
1954514 GAATGCGTTTTTGGTTCCCAATCCTGAAAATATTGTAGGCTGTTACGAGAATCAATGCTTGCCTT
1 GAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTAAGAGAATCAATGCTTGCCTT
* * * * * *
1954579 GTTTAAGGGATAAACATCGATTTTAAGGAAAATAAGGCAATGAAAAGATTTTCATGCAAAAGAAA
66 ATTTATGGGATGAACTTCGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAA
* * * * * * *
1954644 ACCATCAATATTATTTATCTTAATGAGGAAAATGTGTTTACAGTGCCTAATAACAAAATAAATAA
131 ACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
* * * * * * * * *
1954709 AGATCATTATTACAATCCATGCTTGACACATTTGAGGCACGAACTCA-ATTTTTGCAAAAATTGG
196 AGATTATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGA-CTTTACAAAAATTGG
** * * * * * *
1954773 TGGGAAGAAAGCCTTTCTTAAGAAA-CTAAGGAGTCAGTATCATGTC--TCCTTATAAGAAGACT
260 TGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCA-TCAAT-TTA-GTCTATCCTAATGAGAAGACT
** * * * ** *
1954835 AAGTTTATGGTGCGTAATCCTTAAAAGAATAGGGATAACCATGAGTATTCATGTTTGTCTTAATT
322 AAGTTTATGGTGCCAAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTT
* * * * * *
1954900 AAGAAACAAACTTTGATTCTATCAAAAAC-GGTGAAAGGAAAACCTATTCTTACGACACCAAAGC
387 AAGAGACAAACTTTGATTCTATCAAAAACAGTTGCAA-GAAAAGCTTTTCTTGCGACACCAAAGC
1954964 ATCAATGTCATGTATCCTAATGAAGG
451 ATCAATGTCATGTATCCTAATGAAGG
*
1954990 GAATGTGTTTTT-GTTCCCAATCTTGAAAA-AATGGAGATTATTAAGAGAATCAATGCTTGCCTT
1 GAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTAAGAGAATCAATGCTTGCCTT
1955053 ATTT-TAGGGATGAACTTCGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAA
66 ATTTAT-GGGATGAACTTCGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAA
* * *
1955117 AACCATCAATATCATTTATCCTAAGGAAGAGAATGTGTTTATAGTGCCTAATCACCAAATGAATG
130 AACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
* ** * * *
1955182 AAGATCATTACTAGAATCTTTGTTTGTCTCATTTGAGGCACAAACTTAAACTTTACAAAACTTGG
195 AAGATTATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG
* * * * * ** * *
1955247 TGGGAAGAAAGCCTTTCTTACGAAACTAAAG-AGTCAATAT-GATGTATCTTTCTAAGAGGACTA
260 TGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCA-TCAATTTAG-TCTATCCTAATGAGAAGACTA
*** *
1955310 AGTTTATGGTGTGTAATCCTTAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTA
323 AGTTTATGGTGCCAAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTA
* *** * * *
1955375 AGGGATGTTACTTTGATTCTATCAAAAACAGTTGCAAGAAAAGCTTTTCTTGCAACCCCAAATCA
388 AGAGA-CAAACTTTGATTCTATCAAAAACAGTTGCAAGAAAAGCTTTTCTTGCGACACCAAAGCA
*
1955440 TCAATGTCCTGTATCCTAATGAAGG
452 TCAATGTCATGTATCCTAATGAAGG
* * * * * * *
1955465 GAATTTGTTTTTTGTTCCTAATCCTGAAAAGAATGGATACTGTTAAGAGAATCAATGTTTGCCTT
1 GAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTAAGAGAATCAATGCTTGCCTT
* * * * ** *
1955530 ATTTGTGGGATGAAGTACAATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCA-GACATCACAA
66 ATTTATGGGATGAACTTCGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATG-CAAAAGAA
** * * **** * * * * * ** * *
1955594 AATGAATGAAGATCA-TTA--CT-A-GAATCCATTTTGTCTCATTCGAG-GTACGAA-CTTAGAC
130 AA-CCATCAATATCATTTATCCTAATGAGGAGAATGTGT-TTA-T--AGTG-CCTAATCACAAAA
* *** * * ** * * ** *** * * * *
1955652 TTAGCAAAAATTGGTGGCAAGAAAGT-C-TTTCTTG-CGAATCCAAAGCATC-AATTTTGTCTGT
189 TGAATGAAGATT-ATTACTAG-AA-TCCATGT-TTGTCTCATTTGAGGCA-CGAACTTAGACT-T
** * ** * * * *
1955713 CCTA-ATGAGAAGACTTTGTTTGTGGTG-CCAAATCCTTAAAAGATTGGGGATTA-GAATG-AGT
248 --TACA--A-AA-A--TTG---GTGG-GAAGAAAGCCTT----TCTT-GCGA-AACCAAAGCA-T
* * * * * * * * ** * * * * *
1955774 --ATTCATGTTTGTCATAATTAGGAGACAAACTTTGATTCTATCAAAAACGATGAAAGAAAAAT-
294 CAATTTA-GTCTATCCTAATGAGAAGACTAAGTTT-ATGGT-GCCAAATC-CTG-AA-AAGAATG
**** * * ** ** ** *** * * ** * ** *
1955836 ATTTTCTTGCAACACCAAAGCATCAATGCCATGTATCCTAATGAAGGGAAAGTTTTTTTGGT-TC
353 GGGAT-TAGTATGA-GTATTCATGTTTGTC-T-TAT-TTAA-G-AGACAAACTTTGATT-CTATC
** * * *** ** * * * * *
1955900 CCAATC--CTG-AA-AAGAATGGAGTT-AAGAGA-ATCAATGC-T---TG-CCT-TAT--TTATG
410 AAAAACAGTTGCAAGAA-AA-GCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT-
* *
1955951 GGA-T
472 GAAGG
** * ** *** * ** * * * *
1955955 GAACTACGATTTTAAGG---AAAATAGGGTAAAGAAAAGATATTCATGCAAAAGAAAACCTTCAA
1 GAA-TGTG-TTTT-TGGTTCCCAATCTTGAAAAGAATGGAGACT-AT---TAAGAGAA---TCAA
* * * * ** ** *
1956017 T--AT-CATTTATCCTAATAAGGA-GAA-TGT-G-TTTAT-AGTGCCTAATCACCG-AATGAAAG
56 TGCTTGC-CTTAT--TTAT-GGGATGAACT-TCGATTT-TAAG-G-AAAAT-AGGGCAAAG-AA-
* * ** * **
1956073 AAGATTATTACTTG-AATCCATGTTTGTCTCATTTAAGGCA-CGAACT-TAGACTTTA-CAAAAA
110 AAGATT-TT-CATGCAA---A----AG----A---AAACCATC-AA-TAT-CA-TTTATC-CTAA
* * ** * * * * ** *
1956134 TTGGTGGGAAGAAAGCCTTTCT--TG-CGAAAC-CAAAGCATCAATTTAG-TCTATCCTAATGAG
154 -T-G-AGG-AGAATGTGTTTATAGTGCCTAATCACAAA--ATGAATGAAGAT-TAT--TACT-AG
* * * * *
1956194 AAGACTATGTTTG-------TG-GTGC-C-AA---A-TCCTTA-AAAGAA-T-G-GGGATTAGTA
209 AA-TCCATGTTTGTCTCATTTGAG-GCACGAACTTAGACTTTACAAA-AATTGGTGGGA--AGAA
* * ** *** * * * *
1956241 TGACTATTCATGTTTGTCTTATTTAAGAG-A-CAAACTTTGATTCTATCAATAACAGTTGCAAGA
269 AGCCT-TTC----TTG-CGAAACCAA-AGCATC-AA-TTT-AGTCTATC-CTAA-TG-AG-AAGA
* * * * ** * ** *** * * **
1956304 -AAAGTTTTTCTTGTGAC-AA-CAAG-CATCAATTTAG-TCTATCCTAATGAGAAGACTATGTTT
320 CTAAG--TTTATGGTGCCAAATCCTGAAAAGAATGGGGAT-TA--GT-ATGAGTATTC-ATG-TT
** * *** * ** * * * ***
1956364 ATGGTGCCAAATCCTGA-A-AAGAATGGGGATTAGTATGAGTATTGATGTTTGCCTTATGTAAGA
377 -T-GT-CTTATTTAAGAGACAA-ACT-TTGATT-CTATCA-AAAACA-G-TTG-C------AAGA
* * * * ** ** * *
1956427 GACAAACTTTGATTCTAT-CAAAAACAGTTGCAAGAAATGCTTTTCTTGTGACACCAAAGCATCA
426 -A-AAGC-TT--TTCT-TGCGACACCA-AAGC-ATCAATG----TCATGT---ATC----C-T-A
**
1956491 ATGTCATATATCC
470 ATG----A-A-GG
* * * * * *
1956504 TAATGAAAGGAATGTGTTTATAGTTCCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCAAT
1 GAATG---TG----T-TTT-TGGTTCCCAATCTTGAAAAGAATGGAGACTATTAAGAGAATCAAT
* *
1956569 GCTTGCCTTATTTATGGGATGAACTTCAATTTTAAGGAATATAGGGCAAAGAAAAGATTTTCATG
57 GCTTGCCTTATTTATGGGATGAACTTCGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATG
* * *
1956634 CAAAAGAAAACCATCAATATCATTTATACTAATGAGGAGAATGTATTTTTAGTGCCTAATCACAA
122 CAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAA
* * * * * *
1956699 ATTGAATGTAGATTGTTATTGGAATCCATGTTTGTCTCATTTGAGGCACGAATTTAGACTTTACA
187 AATGAATGAAGATTATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA
* * * *
1956764 AAAATTGGTAGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATTTAGTCTATCTTAAAGAGA
252 AAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATTTAGTCTATCCTAATGAGA
** * * *
1956829 AGACTTTGTTTATTGTGCCAAATCCTTAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCA
317 AGACTAAGTTTATGGTGCCAAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCT
* * * * *
1956894 TAATTAAGAGACAAACTTTGATTCTATCAAAAAC-GGTGGAAGGAAAACCTTTTCTTACGACACC
382 TATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTTGCAA-GAAAAGCTTTTCTTGCGACACC
* *
1956958 AAAGCATCAATGTCATGTATCCTTACGAA-G
446 AAAGCATCAATGTCATGTATCCTAATGAAGG
* * * * **
1956988 GAATGTGTTTTTGGTTCCTAATCGTGAAAAGAATGGAGATTGTTAAGAGAATCAATGCAAGCCTT
1 GAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTAAGAGAATCAATGCTTGCCTT
* * *
1957053 ATTTATGGGATGAACTACGA-TTTAAGGAAAATAGAGCAAAGAAAAGATTTTCATGCGAAAGAAA
66 ATTTATGGGATGAACTTCGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAA
* * * * * * *
1957117 ACCATCCATATCATTTCTCCAAATAAGGAGATTATGTTTATAGTGCCTAATTACAAAATGAATGA
131 ACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
* * * * * * * *
1957182 AGATCATTACTAAAATCCAAGTTTGCCTTATTTGAGGGATGAACTTAGA-GTTAGCAAAAATTGG
196 AGATTATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTA-CAAAAATTGG
* * ** * *
1957246 -GGGCAAGAAAGTCTTTCTCGCGAGTCCAAAGCATCAATTTTA-TCTGTCCTAATAAGCAA-ACT
260 TGGG-AAGAAAGCCTTTCTTGCGAAACCAAAGCATCAA-TTTAGTCTATCCTAATGAG-AAGACT
* * * * * *
1957308 ATGTTTATGGTGCCAAATCCAGAAAAGAATGGTGATTAGTATGACTATTCATGTCTATCTTATTT
322 AAGTTTATGGTGCCAAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTT
* * * *
1957373 AAGAGACAAACTTTGATTCCATCAAAAA-AGGTTG-AAGAAAAACCATTTCTTGCGGCACCAAAG
387 AAGAGACAAACTTTGATTCTATCAAAAACA-GTTGCAAG-AAAAGCTTTTCTTGCGACACCAAAG
* * *
1957436 CGTCAATGTCATATATCCTAACGAAGG
450 CATCAATGTCATGTATCCTAATGAAGG
* *
1957463 GAATGTGTTTTTGCTTCCCAAT-TCTGAAAAGAATGGAGACTGTTAAGAGAATCAATGCTTGCCT
1 GAATGTGTTTTTGGTTCCCAATCT-TGAAAAGAATGGAGACTATTAAGAGAATCAATGCTTGCCT
1957527 TATTT-TAGGGATGAACTTCGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGA
65 TATTTAT-GGGATGAACTTCGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGA
* * * * *
1957591 AAACCATCAATATCATTTATCCTAAGGAAGAGAATTTGTTTATATTGCCTAATCACCAAATGAAT
129 AAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
* ** * * * *
1957656 GAAGATCATTACTAGAATCTTTGTTTGTCTCATTTGAGGCACAAACATAAACTTTACAAAACTTG
194 GAAGATTATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTG
* * * * * * * *
1957721 GTGGGAAGAAAGCCTTTCTTACGAAACTAAAG-AGTCAATAT-GATGTATCTTTATAAGAGGACT
259 GTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCA-TCAATTTAG-TCTATCCTAATGAGAAGACT
*** * *
1957784 AAGTTTATGGTGTGTAATCCTTAAAAGAATGGGGATTAGTATGAGTATTCATGTCTGTCTTATTT
322 AAGTTTATGGTGCCAAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTT
* * * * *
1957849 AAGAGACAAACTTTGATTCTATCAAAAACGGTTGCAAGAAAAGCATTTCTTGCAACCCCAAATCA
387 AAGAGACAAACTTTGATTCTATCAAAAACAGTTGCAAGAAAAGCTTTTCTTGCGACACCAAAGCA
* *
1957914 TCAATGTCTTGTATCCTAAAGAAGG
452 TCAATGTCATGTATCCTAATGAAGG
* * * * *
1957939 GAATTTGTTTTTCGTTACCAATCCTGAAAAGAATGGAGACTGTTAAGAGAATCAATGCTTGCCTT
1 GAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTAAGAGAATCAATGCTTGCCTT
* * *
1958004 ATTTATGGGATGAACTACGATTTTAAGGAAAATA-TG----GTAAAGA---TCATGCAAAAGAAA
66 ATTTATGGGATGAACTTCGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAA
* * ** *
1958061 ACCTTCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCACCGAATGAAAGA
131 ACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
* * *
1958126 AGATTATTACTTGAATCCATGTTTGTCTCATTTAAGGCACGAACTTATACTTTACAAAAATTGGT
196 AGATTATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT
* * * *
1958191 CGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATTTAGTCTATACTAATGGGAAGACTATGT
261 GGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATTTAGTCTATCCTAATGAGAAGACTAAGT
1958256 TTATGGTGCCAAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGA
326 TTATGGTGCCAAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGA
* *
1958321 GATAAACTTTGATTCTATCAAAAACAGTTGCAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAA
391 GACAAACTTTGATTCTATCAAAAACAGTTGCAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAA
*
1958386 TGTCATGTATCCTAATGAAAG
456 TGTCATGTATCCTAATGAAGG
* * * * * * *
1958407 GAAAGTGTTTATGGTTCCCAATCTTGAAAA-AATGGAGATTGTTATGAGAATCATTGCTTACCTT
1 GAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTAAGAGAATCAATGCTTGCCTT
* * * * * * **
1958471 ATTTATGGGATGAACTACAATTTTATGGAAAACAAGGCAAAGAAAAGATTTTTATATAAAAGAAA
66 ATTTATGGGATGAACTTCGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAA
* * *
1958536 ACAATCTATATCATTTCTCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
131 ACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
* * * * * **
1958601 AGATCATTACAAGAATCCATTTTTGTCTCATTTGCGACACGAACTTAGAC-TTAGTTAAAATTGG
196 AGATTATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTA-CAAAAATTGG
* * * * * * * * *
1958665 TGGCAAGAAAGTCTTTCTTGTGAATCAAAAGCATCAATTTTGTCTGTCCTAACGAGAAG-C--CG
260 TGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATTTAGTCTATCCTAATGAGAAGACTAAG
* * *
1958727 ---A-AGT------T--T-------AT--GGATTAGTATGACTATTCATGTTTGTCTTAATTAAG
325 TTTATGGTGCCAAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAG
* * * * *
1958771 AGATAAACTTTGATTCTATCAAAAACAG-TGGAAGGAAAACCATTTCTTGCGACACCCAAGCATC
390 AGACAAACTTTGATTCTATCAAAAACAGTTGCAA-GAAAAGCTTTTCTTGCGACACCAAAGCATC
* *
1958835 AATGTCTTGTACCCTAATGAAGG
454 AATGTCATGTATCCTAATGAAGG
* * *
1958858 GAATGTGTTTTT-GTCCCCAATCTTGAAAA-AATGGAGATTATTATGAGAATCAATGCTTGCCTT
1 GAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTAAGAGAATCAATGCTTGCCTT
* * * * *
1958921 ATTTATGGGATGAACTAT-GATTTTATGGAAAATAGGGTAAATAAAAGACTTTCAAGCAAAAGAA
66 ATTTATGGGATGAACT-TCGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAA
* * * * * *
1958985 AACCATCAATATTATTTATACTAATGAGGAGAATGTATTTTTAGTGCCTAATCACAAATTGATTG
130 AACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
* * * * * * * *
1959050 TAGATTATTATTGGAATCAATGTTTATCTCACTGGAGGCACGAACTTAGACTTTACAAAAATAGG
195 AAGATTATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG
* *
1959115 TGGGAAGAAAG-CTTTTTGTGCGAAACCAAAGCATCAATTTTGTCTATCCTAATGAGAAGACTAT
260 TGGGAAGAAAGCCTTTCT-TGCGAAACCAAAGCATCAATTTAGTCTATCCTAATGAGAAGACTA-
** * * * * * *
1959179 A-TTTATGGTGCGTAACCCTTAAAAAAATTGGGATTAGTATGGGTATTCATGTTTGTCTTAATTA
323 AGTTTATGGTGCCAAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTA
* * * * * * *
1959243 AGGGACAAACTTTGATTCTATCAAAAAC-GGTGGAAGGAAAACCTTTTCTTGTGACTCCAAAGCT
388 AGAGACAAACTTTGATTCTATCAAAAACAGTTGCAA-GAAAAGCTTTTCTTGCGACACCAAAGCA
*
1959307 TCAATGTCATGTATCCTAACGAAGG
452 TCAATGTCATGTATCCTAATGAAGG
* * * * *
1959332 GAGTGTGATTTTGGTTCCCAATCTTGAAAAGAACGAAGACTATCAAGAGAATCAATGCTTGCCTT
1 GAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTAAGAGAATCAATGCTTGCCTT
* *
1959397 ATTTCTGGGATGAACTTCGATTTTAAGGAAAATAGGACAAAGAAAAGATTTTCATGCAAAAGAAA
66 ATTTATGGGATGAACTTCGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAA
* * * * *
1959462 ACCATCAATATCATTTATACTAATGAGGAGAATGGGTTTTTAGTGCCTAACCACAAAATGAATGT
131 ACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
* * * *
1959527 AGATTATTACT-GCAATTCTTGTTTGTCTCACTTGAGGCATGAACTTAGACTTTACAAAAATTGG
196 AGATTATTACTAG-AATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG
* * **
1959591 TGGGAAGAAAGACTTTCATGTTAAACCAAAGCATCAATTTCA-TCTATCCTAATAGTAAGAAGAC
260 TGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATTT-AGTCTATCCTAAT-G--AGAAGAC
* * ** * * * *
1959655 T-TGTTTATAGTGCGTAACCCTTAAAAGAATGGAGATTAGTATGAATATTCAT-TTATGTCTTAT
321 TAAGTTTATGGTGCCAAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTT-TGTCTTAT
* * * * * *
1959718 TTAAAAGAAAAACTTTGATCCTATCAAAAACGGTTGCAAGAAAAGCTTTTCCTGCAAGC-CCAAA
385 TTAAGAGACAAACTTTGATTCTATCAAAAACAGTTGCAAGAAAAGCTTTTCTTGCGA-CACCAAA
*
1959782 GCATCAATGTCATGTATCATAATGAAGG
449 GCATCAATGTCATGTATCCTAATGAAGG
*
1959810 GAATGTGTTTTTGGTTCCCAATCCTGAAAA
1 GAATGTGTTTTTGGTTCCCAATCTTGAAAA
1959840 CATCGATTTT
Statistics
Matches: 8480, Mismatches: 1572, Indels: 917
0.77 0.14 0.08
Matches are distributed among these distances:
449 5 0.00
450 251 0.03
451 122 0.01
452 2 0.00
453 175 0.02
454 187 0.02
455 2 0.00
456 2 0.00
457 2 0.00
459 27 0.00
460 1 0.00
462 1 0.00
463 3 0.00
464 389 0.05
465 15 0.00
466 181 0.02
467 274 0.03
468 341 0.04
469 4 0.00
470 1 0.00
471 36 0.00
472 71 0.01
473 353 0.04
474 1175 0.14
475 1157 0.14
476 2355 0.28
477 470 0.06
478 174 0.02
479 16 0.00
480 2 0.00
481 2 0.00
482 2 0.00
484 4 0.00
485 3 0.00
486 1 0.00
487 1 0.00
488 11 0.00
489 1 0.00
490 21 0.00
491 9 0.00
492 26 0.00
493 17 0.00
494 14 0.00
495 13 0.00
496 7 0.00
497 32 0.00
498 34 0.00
499 17 0.00
500 26 0.00
501 18 0.00
502 22 0.00
503 8 0.00
504 12 0.00
505 10 0.00
506 17 0.00
508 3 0.00
509 5 0.00
510 3 0.00
511 3 0.00
513 8 0.00
514 5 0.00
515 3 0.00
516 6 0.00
517 8 0.00
518 6 0.00
519 7 0.00
520 7 0.00
521 12 0.00
522 14 0.00
523 6 0.00
524 5 0.00
525 2 0.00
526 13 0.00
527 19 0.00
528 19 0.00
529 5 0.00
530 21 0.00
531 12 0.00
532 18 0.00
533 11 0.00
534 15 0.00
535 8 0.00
537 1 0.00
538 1 0.00
539 9 0.00
540 10 0.00
541 2 0.00
542 5 0.00
543 2 0.00
545 1 0.00
547 4 0.00
548 5 0.00
549 8 0.00
550 7 0.00
551 18 0.00
552 3 0.00
553 10 0.00
554 7 0.00
555 5 0.00
557 1 0.00
558 15 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (476 bp):
GAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTAAGAGAATCAATGCTTGCCTT
ATTTATGGGATGAACTTCGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAA
ACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
AGATTATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT
GGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATTTAGTCTATCCTAATGAGAAGACTAAGT
TTATGGTGCCAAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGA
GACAAACTTTGATTCTATCAAAAACAGTTGCAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAA
TGTCATGTATCCTAATGAAGG
Found at i:1953572 original size:159 final size:159
Alignment explanation
Indices: 1953364--1955500 Score: 590
Period size: 159 Copynumber: 13.5 Consensus size: 159
1953354 AGCCTCTCTC
* * * * *
1953364 GTGAAACCAAAGCATCAAT-TTAGTCTATCCTAAAGAGAA-GACTATGTTTATGGTGCCAAATCC
1 GTGAAACCAAAGCATCAATATCA-TCTATCCTAATGA-AAGGAATGTGTTTATGGTGCCTAATCC
* **
1953427 TAAAAAGAATGGGGATTAGTATAAGTATTCATGTTTACCTTATTTAAGAGACAAACTTTGATTCT
64 TAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
* *
1953492 ATCAAAAACAGTTGCAAGAAAAGCTTTTCTT
129 ATCAAAAATAGTGGCAAGAAAAGCTTTTCTT
* * * * * * * *
1953523 GTGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTATGATTCCCAATCTTG
1 GTGAAACCAAAGCATCAATATCATCTATCCTAATGAAAGGAATGTGTTTATGGTGCCTAATCCTA
* * * * * * ** * *
1953588 AAAAGAATGGAGACTATTATGAGTA-TCAATGCTTGCCTTATTTAAGGGATGAACTTCGATTTTA
66 AAAAGAATGGGGATTAGTATGAGTATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
*** * *
1953652 AGGAAAATAG-GGAAAAGAAAAGATTTTCATT
130 TCAAAAATAGTGG-CAAGAAAAGCTTTTC-TT
** ** * * * * * * *
1953683 -CAAAAGAAAACCATCAATATCATTTATACTAATG-AGGAGAATGTATTTTTGGTGCCTAATAAC
1 GTGAAACCAAAGCATCAATATCATCTATCCTAATGAAAG-GAATGTGTTTATGGTGCCTAAT-CC
** ** * * * * * * * *
1953746 -AAATTGAATGTAGATTATTACTG-GAATCCATGTTTGTCTCACTTGAG-GCACGAACTTAGACT
64 TAAAAAGAATGGGGATTAGTA-TGAGTATTCATGTTTGTCTTATTTAAGAG-ACAAACTTTGA-T
* *
1953808 T-TA-CAAAAATTGGTGGCAAG-AAAGCTTTTCGT
126 TCTATCAAAAA-TAGTGGCAAGAAAAGCTTTTCTT
* * * ** *
1953840 GCGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAA--AACTATGTTTATGGTGTGTAACCC
1 GTGAAACCAAAGCATCAATATCATCTATCCTAATGA-AAGGAA-TGTGTTTATGGTGCCTAATCC
** * * *
1953903 TAAAAAGAATTAGGATTAGGATGAGTATTCATGTTTGTCTTAATTAGGAGACAAACTTTGATTCT
64 TAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
** *
1953968 ATCAAAAACGGTGG-AAGGAAAACCTTTTCTT
129 ATCAAAAATAGTGGCAA-GAAAAGCTTTTCTT
* * * * * * * * * *
1953999 GTGACACCAAAGCATCAATGTCATGTATCCTAACGAAGGGAATGTGTTTTTGGTTCCCAATCTTG
1 GTGAAACCAAAGCATCAATATCATCTATCCTAATGAAAGGAATGTGTTTATGGTGCCTAATCCTA
* * * * * * * * ** * *
1954064 AAAAGAATGGGGACTA-TCAAGAG-AATCAATGCTTGCCTTATGTATGGGATGAACTTCGATTTT
66 AAAAGAATGGGGATTAGT-ATGAGTATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
*** * *
1954127 AAGGAAAATAG-GGCAAAGAAAAGATTTTCAT
129 ATCAAAAATAGTGGC-AAGAAAAGCTTTTCTT
* ** * * * * *
1954158 GTAAAAGAAAACCATCAATATCA-CTTATACTAATG-AGGAGAATGTGTTTTTAGTGCCTAATCA
1 GTGAAACCAAAGCATCAATATCATC-TATCCTAATGAAAG-GAATGTGTTTATGGTGCCTAATC-
* ** * * * * * * * *
1954221 C-AAAATGAATGTAGATTATTATGGGAATTCTTGTTTGTCTCACTTGAG-GCACAAACTTAGACT
63 CTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAG-ACAAACTTTGA-T
* * *
1954284 T-TA-CAAAAATTGGTGGGAAG-AAAGCCTTTCTT
126 TCTATCAAAAA-TAGTGGCAAGAAAAGCTTTTCTT
* * * * * * * * *
1954316 ATTAAACCAAAGCATCAATTTCGTCTATCCTAATGAGAA-GACTATATTTATGGTGCGTAACCCT
1 GTGAAACCAAAGCATCAATATCATCTATCCTAATGA-AAGGAATGTGTTTATGGTGCCTAATCCT
* * * * * * *
1954380 TAAAAGAATAGGAATCAGTATGAGTATTCATGTATGTCTTATTTAAGAGATAAACTTTGATTCTG
65 AAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
** *
1954445 TCAAAAACGGTTGCAAGAAAAGCTTTTCTT
130 TCAAAAATAGTGGCAAGAAAAGCTTTTCTT
* * * * * ** * * * *
1954475 G-CAACCCCAAAGCATCAATGTCATGTATCATAATGAGGGGAATGCGTTTTTGGTTCCCAATCCT
1 GTGAA-ACCAAAGCATCAATATCATCTATCCTAATGAAAGGAATGTGTTTATGGTGCCTAATCCT
* * * * * * * * * * * * * *
1954539 GAAAATATTGTAGG-CT-GTTACGAG-AATCAATGCTTGCCTTGTTTAAGGGATAAACATCGATT
65 AAAAAGAATG-GGGATTAG-TATGAGTATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGATT
* *** * * *
1954601 TTAAGGAAAATA-AGGCAATGAAAAGATTTTCAT
127 CTATCAAAAATAGTGGCAA-GAAAAGCTTTTCTT
** ** * * * * ** *
1954634 GCAAAAGAAAACCATCAATATTATTTATCTTAATG--AGGAAAATGTGTTTACAGTGCCTAATAA
1 GTGAAACCAAAGCATCAATATCATCTATCCTAATGAAAGG--AATGTGTTTATGGTGCCTAAT-C
*** * * * ** * * * ** * * **
1954697 C-AAAATA-AATAAAGATCATTATTACAATCCATGCTTGACACATTTGAG-GCACGAAC-TCAAT
63 CTAAAA-AGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAG-ACAAACTTTGAT
* * * *
1954758 T-TTTGCAAAAATTGGTGGGAAG-AAAGCCTTTCTT
126 TCTAT-CAAAAA-TAGTGGCAAGAAAAGCTTTTCTT
** * * * * * * * * ** *
1954792 AAGAAA-CTAAGGAGTCAGTATCATGTCTCCTTAT-AAGAAGACTAAGTTTATGGTGCGTAATCC
1 GTGAAACCAAAGCA-TCAATATCATCTATCCTAATGAA-AGGAATGTGTTTATGGTGCCTAATCC
* * * ** * *
1954855 TTAAAAGAATAGGGATAACCATGAGTATTCATGTTTGTCTTAATTAAGAAACAAACTTTGATTCT
64 TAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
** * * *
1954920 ATCAAAAACGGT-GAAAGGAAAACCTATTCTT
129 ATCAAAAATAGTGGCAA-GAAAAGCTTTTCTT
** * * * * * * * * *
1954951 ACGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTT-TTGTTCCCAATCTTG
1 GTGAAACCAAAGCATCAATATCATCTATCCTAATGAAAGGAATGTGTTTATGGTGCCTAATCCTA
* * * * * * * * ** * *
1955015 AAAA-AATGGAGATTATTAAGAG-AATCAATGCTTGCCTTATTTTAGGGATGAACTTCGATTTTA
66 AAAAGAATGGGGATTAGTATGAGTATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
*** * *
1955078 AGGAAAATAG-GGCAAAGAAAAGATTTTCAT
130 TCAAAAATAGTGGC-AAGAAAAGCTTTTCTT
** ** * * * *
1955108 GCAAAAGAAAACCATCAATATCATTTATCCTAA-GGAAGAGAATGTGTTTATAGTGCCTAATCAC
1 GTGAAACCAAAGCATCAATATCATCTATCCTAATGAAAG-GAATGTGTTTATGGTGCCTAATC-C
* * ** * * * * * * **
1955172 -CAAATGAATGAAGATCATTACT-AG-AATCTTTGTTTGTCTCATTTGAG-GCACAAACTTAAAC
64 TAAAAAGAATGGGGATTAGTA-TGAGTATTC-ATGTTTGTCTTATTTAAGAG-ACAAACTTTGA-
* * * *
1955233 TT-TA-CAAAACTTGGTGGGAAG-AAAGCCTTTCTT
125 TTCTATCAAAA-ATAGTGGCAAGAAAAGCTTTTCTT
** * * * * ** * ** **
1955266 ACGAAACTAAAG-AGTCAATATGATGTATCTTTCT-AAGAGGACTAAGTTTATGGTGTGTAATCC
1 GTGAAACCAAAGCA-TCAATATCATCTATCCTAATGAA-AGGAATGTGTTTATGGTGCCTAATCC
* * ***
1955329 TTAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGGGATGTTACTTTGATTC
64 TAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGA-CAAACTTTGATTC
* *
1955394 TATCAAAAACAGTTGCAAGAAAAGCTTTTCTT
128 TATCAAAAATAGTGGCAAGAAAAGCTTTTCTT
* * * * * * * * * * *
1955426 G-CAACCCCAAATCATCAATGTCCTGTATCCTAATGAAGGGAATTTGTTTTTTGTTCCTAATCCT
1 GTGAA-ACCAAAGCATCAATATCATCTATCCTAATGAAAGGAATGTGTTTATGGTGCCTAATCCT
*
1955490 GAAAAGAATGG
65 AAAAAGAATGG
1955501 ATACTGTTAA
Statistics
Matches: 1376, Mismatches: 498, Indels: 207
0.66 0.24 0.10
Matches are distributed among these distances:
156 6 0.00
157 116 0.08
158 436 0.32
159 702 0.51
160 113 0.08
161 3 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.31
Consensus pattern (159 bp):
GTGAAACCAAAGCATCAATATCATCTATCCTAATGAAAGGAATGTGTTTATGGTGCCTAATCCTA
AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
CAAAAATAGTGGCAAGAAAAGCTTTTCTT
Found at i:1956578 original size:159 final size:157
Alignment explanation
Indices: 1956142--1956968 Score: 563
Period size: 159 Copynumber: 5.2 Consensus size: 157
1956132 AATTGGTGGG
* * * *
1956142 AAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATTTAGTCTATCCTAATGAGAAGACTATGTTTG
1 AAGAAAGCTTTTCTTGTGACACCAAAGCATCAATTTAGTCTATCCTAATGAGAAGACTATGTTTA
* * * *
1956207 TGGTGCCAAATCCTT-AAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGA
66 TGGTGCCAAAT-CTTGAAAAGAATGGGGATTAGTATGA-GAATCATGTTTGCCTTATGTAAGAGA
*
1956271 CAAACTTTGATTCTATCAATAACAGTTGC
129 CAAACTTTGATTCTATCAAAAACAGTTGC
* *
1956300 AAGAAAAGTTTTTCTTGTGACAAC-AAGCATCAATTTAGTCTATCCTAATGAGAAGACTATGTTT
1 AAG-AAAGCTTTTCTTGTGACACCAAAGCATCAATTTAGTCTATCCTAATGAGAAGACTATGTTT
* * *
1956364 ATGGTGCCAAATCCTGAAAAGAATGGGGATTAGTATGAGTATTGATGTTTGCCTTATGTAAGAGA
65 ATGGTGCCAAATCTTGAAAAGAATGGGGATTAGTATGAG-AATCATGTTTGCCTTATGTAAGAGA
1956429 CAAACTTTGATTCTATCAAAAACAGTTGC
129 CAAACTTTGATTCTATCAAAAACAGTTGC
* * * *
1956458 AAGAAATGCTTTTCTTGTGACACCAAAGCATCAATGTCA-TATATCCTAATGA-AAGGAATGTGT
1 AAGAAA-GCTTTTCTTGTGACACCAAAGCATCAAT-TTAGTCTATCCTAATGAGAA-GACTATGT
* * * * * * *
1956521 TTATAGTTCCCAATCTTGAAAAGAATGGAGATT-GTTATGAGAATCAATGCTTGCCTTATTTATG
63 TTATGGTGCCAAATCTTGAAAAGAATGGGGATTAG-TATGAGAATC-ATGTTTGCCTTATGTAAG
* ** ** * *** * * *
1956585 GGATGAACTTCAATTTTAAGGAATATAG-GGC
126 AGACAAACTTTGATTCTATCAAAAACAGTTGC
* * ** * ** * * * * * * * *
1956616 AAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCA-TTTATACTAATGAGGAGAATGTAT
1 -AAG-AAAGCTTTTCTTGTGACACCAAAGCATCAAT-TTAGTCTATCCTAATGAGAAGACTATGT
* * * ** * ** * * * *
1956680 TTTTAGTGCCTAATC-ACAAATTGAATGTAGATT-GTTATTG-GAATCCATGTTTGTCTCATTTG
63 TTATGGTGCCAAATCTTGAAA-AGAATGGGGATTAG-TA-TGAGAAT-CATGTTTGCCTTATGTA
* ** * *
1956742 AG-GCACGAA-TTTAGACTT-TA-CAAAAATTGGTAGG
124 AGAG-ACAAACTTT-GA-TTCTATCAAAAA-CAGTTGC
* * * * *
1956776 AAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATTTAGTCTATCTTAAAGAGAAGACTTTGTTTA
1 AAGAAAGCTTTTCTTGTGACACCAAAGCATCAATTTAGTCTATCCTAATGAGAAGACTATGTTTA
* * * *
1956841 TTGTGCCAAATCCTT-AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCATAAT-TAAGAG
66 TGGTGCCAAAT-CTTGAAAAGAATGGGGATTAGTATGAG-AATCATGTTTG-CCTTATGTAAGAG
* *
1956904 ACAAACTTTGATTCTATCAAAAAC-GGTGG
128 ACAAACTTTGATTCTATCAAAAACAGTTGC
* **
1956933 AAGGAAAACCTTTTCTTACGACACCAAAGCATCAAT
1 AA-G-AAAGCTTTTCTTGTGACACCAAAGCATCAAT
1956969 GTCATGTATC
Statistics
Matches: 524, Mismatches: 112, Indels: 65
0.75 0.16 0.09
Matches are distributed among these distances:
157 16 0.03
158 242 0.46
159 254 0.48
160 12 0.02
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.32
Consensus pattern (157 bp):
AAGAAAGCTTTTCTTGTGACACCAAAGCATCAATTTAGTCTATCCTAATGAGAAGACTATGTTTA
TGGTGCCAAATCTTGAAAAGAATGGGGATTAGTATGAGAATCATGTTTGCCTTATGTAAGAGACA
AACTTTGATTCTATCAAAAACAGTTGC
Found at i:1956997 original size:158 final size:156
Alignment explanation
Indices: 1955691--1957028 Score: 582
Period size: 158 Copynumber: 8.5 Consensus size: 156
1955681 TCTTGCGAAT
** * * * * * *
1955691 CCAAAGCATCAATTTTGTCTGTCCTAATGAGAAGACTTTGTTTGTGGTGCCAAATCCTTAAAAGA
1 CCAAAGCATCAA-TTCATCTATCCTAATGA-AGGAATGTGTTTATTGTGCCAAATCCTTAAAAGA
* * * * *
1955756 TTGGGGATTAGAATGAGTATTCATGTTTGTCATAATTAGGAGACAAACTTTGATTCTATCAAAAA
64 ATGGAGATTAGTATGAGTATTCATGTTTGTCTTAATTAAGAGACAAACTTTGATTCTATCAAAAA
* * ** **
1955821 CGATGAAAGAAAAATATTTTCTTGCAACA
129 CGGTGCAAG-AAAAGCTTTTCTTGTGACA
* * * * * * *
1955850 CCAAAGCATCAATGCCATGTATCCTAATGAAGGGAAAGT-TTTTTTGGTTCCCAATCCTGAAAAG
1 CCAAAGCATCAAT-TCATCTATCCTAATGAA-GGAATGTGTTTATT-GTGCCAAATCCTTAAAAG
* * * * * * ** ** * **
1955914 AATGGAG-TTA--A-GAG-AATCAATGCTTGCCTTATTTATGGGATGAACTACGATTTTAAGGAA
63 AATGGAGATTAGTATGAGTATTC-ATGTTTGTCTTAATTAAGAGACAAACTTTGATTCT-ATCAA
* * * * * ** *
1955974 AATAGGGT-AAAGAAAAGATATTCATGCAAAA
126 AA-ACGGTGCAAGAAAAGCTTTTCTTGTGACA
** * * * * * ** *
1956005 GAAAACCTTCAATATCATTTATCCTAAT-AAGGAGAATGTGTTTATAGTGCCTAATCAC-CGAAT
1 CCAAAGCATCAAT-TCATCTATCCTAATGAA-G-GAATGTGTTTATTGTGCCAAATC-CTTAAAA
* * * * * * * *
1956068 GAAAGAAGATTATTACTTGA--ATCCATGTTTGTCTCATTTAAG-GCACGAACTTAGACTT-TA-
62 GAATGGAGATTAGTA--TGAGTATTCATGTTTGTCTTAATTAAGAG-ACAAACTTTGA-TTCTAT
* * * * *
1956128 CAAAAATTGGTGGGAAG-AAAGCCTTTCTTGCGAAA
123 CAAAAA-CGGT-GCAAGAAAAGCTTTTCTTGTGACA
* * * * * *
1956163 CCAAAGCATCAATTTAGTCTATCCTAATGAGAAGACTATGTTTGTGGTGCCAAATCCTTAAAAGA
1 CCAAAGCATCAATTCA-TCTATCCTAATGA-AGGAATGTGTTTATTGTGCCAAATCCTTAAAAGA
* * * *
1956228 ATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAA
64 ATGGAGATTAGTATGAGTATTCATGTTTGTCTTAATTAAGAGACAAACTTTGATTCTATCAAAAA
* *
1956293 CAGTTGCAAGAAAAGTTTTTCTTGTGACA
129 C-GGTGCAAGAAAAGCTTTTCTTGTGACA
* * * * * * *
1956322 AC-AAGCATCAATTTAGTCTATCCTAATGAGAAGACTATGTTTATGGTGCCAAATCCTGAAAAGA
1 CCAAAGCATCAATTCA-TCTATCCTAATGA-AGGAATGTGTTTATTGTGCCAAATCCTTAAAAGA
* * *
1956386 ATGGGGATTAGTATGAGTATTGATGTTTGCCTT-ATGTAAGAGACAAACTTTGATTCTATCAAAA
64 ATGGAGATTAGTATGAGTATTCATGTTTGTCTTAAT-TAAGAGACAAACTTTGATTCTATCAAAA
* *
1956450 ACAGTTGCAAGAAATGCTTTTCTTGTGACA
128 AC-GGTGCAAGAAAAGCTTTTCTTGTGACA
* * * *
1956480 CCAAAGCATCAATGTCATATATCCTAATGAAAGGAATGTGTTTATAGTTCCCAAT-CTTGAAAAG
1 CCAAAGCATCAAT-TCATCTATCCTAATG-AAGGAATGTGTTTATTGTGCCAAATCCTT-AAAAG
* * * * * * ** ** * **
1956544 AATGGAGATT-GTTATGAG-AATCAATGCTTGCCTTATTTATGGGATGAACTTCAATTTTAAGGA
63 AATGGAGATTAG-TATGAGTATTC-ATGTTTGTCTTAATTAAGAGACAAACTTTGATTCT-ATCA
* * * ** *
1956607 ATATA-GG-GCAAAGAAAAGATTTTCATGCAAAA
125 A-AAACGGTGC-AAGAAAAGCTTTTCTTGTGACA
** * * * * * *
1956639 GAAAACCATCAATATCATTTATACTAATGAGGAGAATGTATTT-TTAGTGCCTAATCAC--AAAT
1 CCAAAGCATCAAT-TCATCTATCCTAATGAAG-GAATGTGTTTATT-GTGCCAAATC-CTTAAA-
* * * * * * * *
1956701 TGAATGTAGATT-GTTATTG-GAATCCATGTTTGTCTCATTTGAG-GCACGAA-TTTAGACTT-T
61 AGAATGGAGATTAG-TA-TGAGTATTCATGTTTGTCTTAATTAAGAG-ACAAACTTT-GA-TTCT
* * * *
1956761 A-CAAAAATTGGTAGGAAG-AAAGCCTTTCTTGTGAAA
121 ATCAAAAA-CGGT-GCAAGAAAAGCTTTTCTTGTGACA
* * * * * *
1956797 CCAAAGCATCAATTTAGTCTATCTTAAAGAGAAGACTTTGTTTATTGTGCCAAATCCTTAAAAGA
1 CCAAAGCATCAATTCA-TCTATCCTAATGA-AGGAATGTGTTTATTGTGCCAAATCCTTAAAAGA
* *
1956862 ATGGGGATTAGTATGAGTATTCATGTTTGTCATAATTAAGAGACAAACTTTGATTCTATCAAAAA
64 ATGGAGATTAGTATGAGTATTCATGTTTGTCTTAATTAAGAGACAAACTTTGATTCTATCAAAAA
* * **
1956927 CGGTGGAAGGAAAACCTTTTCTTACGACA
129 CGGTGCAA-GAAAAGCTTTTCTTGTGACA
* * * * * * *
1956956 CCAAAGCATCAATGTCATGTATCCTTACGAAGGAATGTGTTT-TTGGTTCCTAATCGTGAAAAGA
1 CCAAAGCATCAAT-TCATCTATCCTAATGAAGGAATGTGTTTATT-GTGCCAAATCCTTAAAAGA
1957020 ATGGAGATT
64 ATGGAGATT
1957029 GTTAAGAGAA
Statistics
Matches: 891, Mismatches: 217, Indels: 143
0.71 0.17 0.11
Matches are distributed among these distances:
154 7 0.01
155 84 0.09
156 24 0.03
157 31 0.03
158 396 0.44
159 323 0.36
160 21 0.02
161 5 0.01
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (156 bp):
CCAAAGCATCAATTCATCTATCCTAATGAAGGAATGTGTTTATTGTGCCAAATCCTTAAAAGAAT
GGAGATTAGTATGAGTATTCATGTTTGTCTTAATTAAGAGACAAACTTTGATTCTATCAAAAACG
GTGCAAGAAAAGCTTTTCTTGTGACA
Found at i:1960442 original size:252 final size:246
Alignment explanation
Indices: 1959979--1960478 Score: 614
Period size: 252 Copynumber: 2.0 Consensus size: 246
1959969 AACCCATGCT
*
1959979 TGTCTCATTTGAGGCACAAACTAAATTTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTAAGAA
1 TGTCTCATTTGAGGCACAAACTAAATCTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTAAGAA
* * * *
1960044 ACTAAAGAGTCAACATCATGTATAAGAAGACTAAGTTTATGGTGCGTAATCCTCAAAAGAATGAG
66 ACCAAAGAGTCAACATCATCTATAAGAAGACTAAGTTTATGGTGCGCAATCCTAAAAAGAATGAG
* * *
1960109 TATTAGCATGAGTATTCATGTTTGCCTTAATCAAGAGCCAAACTTTGATTCTATAAAAAACGGTG
131 GATTAGCATGAGTATTCATGTTTGCCTTAATCAAGAGACAAACTTTGATTCTACAAAAAACGGTG
*
1960174 GAAGGAAAACCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAA
196 CAAGGAAAACCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAA
** * **
1960225 TGTCTCATTTGAGGCATGAACTTAGA-CTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGTGA
1 TGTCTCATTTGAGGCACAAAC-TAAATCTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTAAGA
** * * *
1960289 AACCAAAGCA-TCCATTTAGTCTATCCTAATGAGAAGACTATGTTTGTGGTGC-CAATCCTGAAA
65 AACCAAAG-AGT-CA-ACA-TC-AT-CT-ATAAGAAGACTAAGTTTATGGTGCGCAATCCT-AAA
* ** * * *
1960352 AAGAATTG-GGATTAGTATGAGTATTCATGTTTGTTTTATTTAAGAGACAAACTTTGATTCTACC
122 AAGAA-TGAGGATTAGCATGAGTATTCATGTTTGCCTTAATCAAGAGACAAACTTTGATTCTACA
* * *
1960416 AAAAACAGTTGCAA-GAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCTTAA
186 AAAAAC-GGTGCAAGGAAAACCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAA
1960477 TG
1 TG
1960479 AAGGGAATGT
Statistics
Matches: 215, Mismatches: 28, Indels: 16
0.83 0.11 0.06
Matches are distributed among these distances:
246 62 0.29
247 6 0.03
248 1 0.00
249 2 0.01
250 2 0.01
251 7 0.03
252 128 0.60
253 7 0.03
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.31
Consensus pattern (246 bp):
TGTCTCATTTGAGGCACAAACTAAATCTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTAAGAA
ACCAAAGAGTCAACATCATCTATAAGAAGACTAAGTTTATGGTGCGCAATCCTAAAAAGAATGAG
GATTAGCATGAGTATTCATGTTTGCCTTAATCAAGAGACAAACTTTGATTCTACAAAAAACGGTG
CAAGGAAAACCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAA
Found at i:1962581 original size:474 final size:474
Alignment explanation
Indices: 1961378--1963435 Score: 2677
Period size: 474 Copynumber: 4.3 Consensus size: 474
1961368 AAAACGATTG
* * * * * * * * *
1961378 CAAGAATCAATGTCAGGTATCATAATGAAAGGAATTTGTTTTTGGTTCCCAATCCTGAAAATATT
1 CAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTT-GTCCCCAATCTTGAAAAGAAT
* * * * * * *
1961443 GTAGGCTATTACAG-GAATCAATACTTACCTTATTTAAGGGATAAAC-ATCGATTTTAAGGAATA
65 GGAGACTATTA-AGAGAATCAATGCTTGCCTTATTTATGGGATGAACTAT-GATTTTAAGGAAAA
* * * *
1961506 TAGGTCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTGA-CCTATTGAGAAAA
128 TAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTT-ATCCTAATGAGGAGA
** * * *
1961570 ATGTGTTTACGGTGCCTAATCACATAATGAATGAAGATCCTTACTAGAATCCTTGTTTGTCTCAT
192 ATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCAT
* * * *
1961635 TTAAGGCACGAACTTAAACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACTAAAG-
257 TTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGC
* * * * * * *** *
1961699 AGTCAATAT-GATGTATCTTTATAAGAAGACTAAGTTTATGGTGTGTAATCCTTAAAAGAATGGG
322 A-TCAATTTAG-TCTATCCTAATGAGAAGACTATGTTTATGGTGCCAAATCCTGAAAAGAATGGG
* *
1961763 GATTAGTATGAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTT
385 GATTAGTATGAGTATTCATGTTTGTCTTAATTAAGAGACAAACTTTGATTCTATCAAAAACGG-T
* *
1961828 GCAAGAAAAGCATTTCTTGCAAC-CC
449 GCAAGAAAACCATTTCTTGCGACACC
* * ** * * *
1961853 CAAATCATCAATGTCTTGTATCCTAAAAAAGGGAATTTGTTTTTTGAT-ACCAATCCTGAAAAGA
1 C-AAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG-TTTTTG-TCCCCAATCTTGAAAAGA
* * *
1961917 ATGGAGACTGTTAAGAGAATTAATGCTTGCCTTATTTATGGGATGAACTACGATTTTAAGGAAAA
63 ATGGAGACTATTAAGAGAATCAATGCTTGCCTTATTTATGGGATGAACTATGATTTTAAGGAAAA
* * * *
1961982 TAGGGCAAAGAAAAGATTTTCA-GACGAAAGAAAACCATCTATATCATTTCTTCTAATGAGGAGA
128 TAGGGCAAAGAAAAGATTTTCATG-CAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGA
*
1962046 ATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATTTTTGTCTCAT
192 ATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCAT
* * * * *
1962111 TCGAGGCATGAACTTAGAC-TTAGCAAAAATTGGTGGCAAGAAAGTCTTTCTTGCGAATCCAAAG
257 TTGAGGCACGAACTTAGACTTTA-CAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAG
* * * * * *
1962175 CATCAATTTTGTCTGTCCTAATGAGAAGCCGATGTTTATGGTGCTAAATCCAGAAAAGAATGGGG
321 CATCAATTTAGTCTATCCTAATGAGAAGACTATGTTTATGGTGCCAAATCCTGAAAAGAATGGGG
* * * ** * *
1962240 ATTAGTATGACTATACATGTTTGTCTTAATTAGGAGGTAAACTTTGATTCTATCAAAAATGGTGG
386 ATTAGTATGAGTATTCATGTTTGTCTTAATTAAGAGACAAACTTTGATTCTATCAAAAACGGTGC
*
1962305 AGGGAAAACCATTTCTTGCGACACC
451 A-AGAAAACCATTTCTTGCGACACC
*
1962330 CAAGCATCAATGTCTTGTATCCTAATGAAGGGAATGTGTTTTTGTCCCCAATCTTGAAAA-AATG
1 CAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGTCCCCAATCTTGAAAAGAATG
*
1962394 GAGACTATTAAAAGAATCAATGCTTGCCTTATTTATGGGATGAACTATGATTTTAAGGAAAATAG
66 GAGACTATTAAGAGAATCAATGCTTGCCTTATTTATGGGATGAACTATGATTTTAAGGAAAATAG
*
1962459 GACAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGT
131 GGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGT
* *
1962524 GTTTATAGTGCCTAATCACAAAATGAATGAAGATTATTACTTGAATCCATGTTTGTCTCATTTGA
196 GTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA
* * *
1962589 GGCACGAATTTAGACTTTACAAAAGTTGGTGGGAAGAACGCCTTTCTTGCGAAACCAAAGCATCA
261 GGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCA
* * * *
1962654 ATTTAGTCTATCTTAAAGAGAAGACTTTGTTTATGGTGCCAAATCCTTAAAAGAATGGGGATTAG
326 ATTTAGTCTATCCTAATGAGAAGACTATGTTTATGGTGCCAAATCCTGAAAAGAATGGGGATTAG
* * *
1962719 TTTGAGTATTCATGTTTGTCATAATTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGA
391 TATGAGTATTCATGTTTGTCTTAATTAAGAGACAAACTTTGATTCTATCAAAAACGGTGCAA-GA
*
1962784 AAACCTTTTCTTGCGACACC
455 AAACCATTTCTTGCGACACC
* ** * * *
1962804 AAAGCATCAATGTCATGTATCCTAACAAAGAGAATGTGTTTTTGTTCCCTAATCTCGAAAA-AAT
1 CAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTG-TCCCCAATCTTGAAAAGAAT
* * *
1962868 GGAGATTATTAAGAGAATCGATGCTTGCCTTATTTATGGGATGATCTATGATTTTAAGGAAAATA
65 GGAGACTATTAAGAGAATCAATGCTTGCCTTATTTATGGGATGAACTATGATTTTAAGGAAAATA
* *
1962933 GGGTAAAGAAAAGATTTTCATGCAAAAGAAAACCTTCAATATCATTTATCCTAATGAGGAGAATG
130 GGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATG
* * ** * * * *
1962998 TGTTTATAGTACCTAATCCCTGAATGAAGGAAGATTATTCCTTGAATCCATGTTTGTCTCATTT-
195 TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG
* *
1963062 AAGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATC
260 AGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATC
1963127 AATTTAGTCTATCCTAATGAGAAGACTATGTTTATGGTGCCAAATCCTGAAAAGAATGGGGATTA
325 AATTTAGTCTATCCTAATGAGAAGACTATGTTTATGGTGCCAAATCCTGAAAAGAATGGGGATTA
* ** * *
1963192 GTATGAGTATTGATGTTTACCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACCGTTGCAAG
390 GTATGAGTATTCATGTTTGTCTTAATTAAGAGACAAACTTTGATTCTATCAAAAA-CGGTGCAAG
** *
1963257 -AAATGATTTTCTTGTGACACC
454 AAAACCA-TTTCTTGCGACACC
* * * * *
1963278 AAAGCATCAATGTCATGTATCCTAATGAAAGGAACGTGTTTATAGTTCCCAATCTTGAAAAGAAT
1 CAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTT-TTGTCCCCAATCTTGAAAAGAAT
* * *
1963343 GGAGATTATTATGAGAATCAATGCTTGCCTTATTTATGGGATGAACT-TCGATTTTAAGGAATAT
65 GGAGACTATTAAGAGAATCAATGCTTGCCTTATTTATGGGATGAACTAT-GATTTTAAGGAAAAT
1963407 AGGGCAAAGAAAAGATTTTCATGCAAAAG
129 AGGGCAAAGAAAAGATTTTCATGCAAAAG
1963436 TGATGAAAAC
Statistics
Matches: 1390, Mismatches: 171, Indels: 44
0.87 0.11 0.03
Matches are distributed among these distances:
473 3 0.00
474 641 0.46
475 327 0.24
476 407 0.29
477 12 0.01
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (474 bp):
CAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGTCCCCAATCTTGAAAAGAATG
GAGACTATTAAGAGAATCAATGCTTGCCTTATTTATGGGATGAACTATGATTTTAAGGAAAATAG
GGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGT
GTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA
GGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCA
ATTTAGTCTATCCTAATGAGAAGACTATGTTTATGGTGCCAAATCCTGAAAAGAATGGGGATTAG
TATGAGTATTCATGTTTGTCTTAATTAAGAGACAAACTTTGATTCTATCAAAAACGGTGCAAGAA
AACCATTTCTTGCGACACC
Found at i:1962719 original size:950 final size:950
Alignment explanation
Indices: 1961378--1963435 Score: 2814
Period size: 950 Copynumber: 2.2 Consensus size: 950
1961368 AAAACGATTG
* * * * * * *
1961378 CAAGAATCAATGTCAGGTATCATAATGAAAGGAATTTGTTTTTGGTTCCCAATCCTGAAAATATT
1 CAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTT-GTTCCCAATCTTGAAAAGAAT
* * * * * * * *
1961443 GTAGGCTATTACAGGAATCAATACTTACCTTATTTAAGGGATAAAC-ATCGATTTTAAGGAATAT
65 GGAGACTATTAAAAGAATCAATGCTTGCCTTATTTATGGGATGAACTATCGATTTTAAGGAATAT
* *
1961507 AGGTCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTGACCTATTGAGAAAAAT
130 AGGACAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTGACCTAATGAGAAAAAT
* * * *
1961572 GTGTTTACGGTGCCTAATCACATAATGAATGAAGATCCTTACTAGAATCCTTGTTTGTCTCATTT
195 GTGTTTACAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT
*
1961637 AAGGCACGAACTTAAACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACTAAAGAGT
260 AAGGCACGAACTTAAACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGAGT
* * ***
1961702 CAATATGATGTATCTTTATAAGAAGACTAAGTTTATGGTGTGTAATCCTTAAAAGAATGGGGATT
325 CAATATGATCTATCTTTAAAAGAAGACTAAGTTTATGGTGCCAAATCCTTAAAAGAATGGGGATT
* *
1961767 AGTATGAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTTGCAA
390 AGTATGAGTATTCATGTTTGTCATAATTAAAAGACAAACTTTGATTCTATCAAAAACGG-TGCAA
* * * * * *
1961832 -GAAAAGCATTTCTTGCAACCCCAAATCATCAATGTCTTGTATCCTAAAAAAGGGAATTTGTTTT
454 GGAAAACCATTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAAAAAAGAGAATGTG-TTT
* *
1961896 TTGATACC-AATC-CTGAAAAGAATGGAGACTGTTAAGAGAATTAATGCTTGCCTTATTTATGGG
518 TTGATACCTAATCTC-GAAAA-AATGGAGACTATTAAGAGAATCAATGCTTGCCTTATTTATGGG
* *
1961959 ATGAACTACGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCA-GACGAAAGAAAACCATCTA
581 ATGAACTACGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATG-CAAAAGAAAACCATCAA
* * * *
1962023 TATCATTTCTTCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATT
645 TATCATTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAAGGAAGATCATT
* * *
1962088 ACTAGAATCCATTTTTGTCTCATTCGAGGCATGAACTTAGAC-TTAGCAAAAATTGGTGGCAAGA
710 ACTAGAATCCATGTTTGTCTCATT-GAAGCACGAACTTAGACTTTA-CAAAAATTGGTGGCAAGA
* * * * * *
1962152 AAGTCTTTCTTGCGAATCCAAAGCATCAATTTTGTCTGTCCTAATGAGAAGCCGATGTTTATGGT
773 AAGCCTTTCTTGCAAAACCAAAGCATCAATTTAGTCTATCCTAATGAGAAGACGATGTTTATGGT
* ** * **
1962217 GCTAAATCCAGAAAAGAATGGGGATTAGTATGACTATACATGTTTGTCTTAATTAGGAGGTAAAC
838 GCCAAATCCAGAAAAGAATGGGGATTAGTATGACTATACATGTTTACCTTAATTAAGAGACAAAC
* * *
1962282 TTTGATTCTATCAAAAA-TGGTGGAGGGAAAACCA-TTTCTTGCGACACC
903 TTTGATTCTATCAAAAACCGGTGCA-AG-AAACCATTTTCTTGCGACACC
* * *
1962330 CAAGCATCAATGTCTTGTATCCTAATGAAGGGAATGTGTTTTTGTCCCCAATCTTGAAAA-AATG
1 CAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGTTCCCAATCTTGAAAAGAATG
*
1962394 GAGACTATTAAAAGAATCAATGCTTGCCTTATTTATGGGATGAACTAT-GATTTTAAGGAAAATA
66 GAGACTATTAAAAGAATCAATGCTTGCCTTATTTATGGGATGAACTATCGATTTTAAGGAATATA
* *
1962458 GGACAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTT-ATCCTAATGAGGAGAAT
131 GGACAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTGA-CCTAATGAGAAAAAT
* * *
1962522 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTATTACTTGAATCCATGTTTGTCTCATTT
195 GTGTTTACAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT
* * * * * *
1962587 GAGGCACGAATTTAGACTTTACAAAAGTTGGTGGGAAGAACGCCTTTCTTGCGAAACCAAAGCA-
260 AAGGCACGAACTTAAACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAG-AG
* **
1962651 TCAAT-TTAGTCTATC-TTAAAGAGAAGACTTTGTTTATGGTGCCAAATCCTTAAAAGAATGGGG
324 TCAATATGA-TCTATCTTTAAA-AGAAGACTAAGTTTATGGTGCCAAATCCTTAAAAGAATGGGG
* * *
1962714 ATTAGTTTGAGTATTCATGTTTGTCATAATTAAGAGACAAACTTTGATTCTATCAAAAACGGTGG
387 ATTAGTATGAGTATTCATGTTTGTCATAATTAAAAGACAAACTTTGATTCTATCAAAAACGGTGC
* * *
1962779 AAGGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAACAAAGAGAATGTGTT
452 AAGGAAAACCATTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAAAAAAGAGAATGTGTT
* * * *
1962844 TTTGTTCCCTAATCTCGAAAAAATGGAGATTATTAAGAGAATCGATGCTTGCCTTATTTATGGGA
517 TTTGATACCTAATCTCGAAAAAATGGAGACTATTAAGAGAATCAATGCTTGCCTTATTTATGGGA
* * * *
1962909 TGATCTATGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTTCATGCAAAAGAAAACCTTCAATA
582 TGAACTACGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATA
* ** * *
1962974 TCATTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCCCTGAATGAAGGAAGATTATTCC
647 TCATTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAAGGAAGATCATTAC
* * *
1963039 TTGAATCCATGTTTGTCTCATTTAAGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGC
712 TAGAATCCATGTTTGTCTCATTGAAGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGC
*
1963104 CTTTCTTGCAAAACCAAAGCATCAATTTAGTCTATCCTAATGAGAAGACTATGTTTATGGTGCCA
777 CTTTCTTGCAAAACCAAAGCATCAATTTAGTCTATCCTAATGAGAAGACGATGTTTATGGTGCCA
* * ** *
1963169 AATCCTGAAAAGAATGGGGATTAGTATGAGTATTGATGTTTACCTTATTTAAGAGACAAACTTTG
842 AATCCAGAAAAGAATGGGGATTAGTATGACTATACATGTTTACCTTAATTAAGAGACAAACTTTG
* ** *
1963234 ATTCTATCAAAAACCGTTGCAAGAAATGATTTTCTTGTGACACC
907 ATTCTATCAAAAACCGGTGCAAGAAACCATTTTCTTGCGACACC
* * *
1963278 AAAGCATCAATGTCATGTATCCTAATGAAAGGAACGTGTTTATAGTTCCCAATCTTGAAAAGAAT
1 CAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTT-TTGTTCCCAATCTTGAAAAGAAT
* **
1963343 GGAGATTATTATGAGAATCAATGCTTGCCTTATTTATGGGATGAACT-TCGATTTTAAGGAATAT
65 GGAGACTATTAAAAGAATCAATGCTTGCCTTATTTATGGGATGAACTATCGATTTTAAGGAATAT
*
1963407 AGGGCAAAGAAAAGATTTTCATGCAAAAG
130 AGGACAAAGAAAAGATTTTCATGCAAAAG
1963436 TGATGAAAAC
Statistics
Matches: 970, Mismatches: 121, Indels: 32
0.86 0.11 0.03
Matches are distributed among these distances:
947 4 0.00
948 211 0.22
949 218 0.22
950 481 0.50
951 19 0.02
952 37 0.04
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (950 bp):
CAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGTTCCCAATCTTGAAAAGAATG
GAGACTATTAAAAGAATCAATGCTTGCCTTATTTATGGGATGAACTATCGATTTTAAGGAATATA
GGACAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTGACCTAATGAGAAAAATG
TGTTTACAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTA
AGGCACGAACTTAAACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACGAAACCAAAGAGTC
AATATGATCTATCTTTAAAAGAAGACTAAGTTTATGGTGCCAAATCCTTAAAAGAATGGGGATTA
GTATGAGTATTCATGTTTGTCATAATTAAAAGACAAACTTTGATTCTATCAAAAACGGTGCAAGG
AAAACCATTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAAAAAAGAGAATGTGTTTTTG
ATACCTAATCTCGAAAAAATGGAGACTATTAAGAGAATCAATGCTTGCCTTATTTATGGGATGAA
CTACGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCAT
TTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAAGGAAGATCATTACTAGA
ATCCATGTTTGTCTCATTGAAGCACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGCCTTT
CTTGCAAAACCAAAGCATCAATTTAGTCTATCCTAATGAGAAGACGATGTTTATGGTGCCAAATC
CAGAAAAGAATGGGGATTAGTATGACTATACATGTTTACCTTAATTAAGAGACAAACTTTGATTC
TATCAAAAACCGGTGCAAGAAACCATTTTCTTGCGACACC
Found at i:1963100 original size:158 final size:158
Alignment explanation
Indices: 1961513--1963191 Score: 448
Period size: 158 Copynumber: 10.6 Consensus size: 158
1961503 ATATAGGTCA
* * * *
1961513 AAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTGA-CCTATTGAGAAAAATGTGTT
1 AAGAAAAGATTTTCATGCAAAACAAAACCATCAATATCATTT-ATCCTAATGAGGAGAATGTGTT
** * * * ** * *
1961577 TACGGTGCCTAATCAC-ATAATGAATGAAGATCCTTACTAGAATCCTTGTTTGTCTCATTTAAGG
65 TATAGTGCCTAATCCCTA-AAAGAATGGAGATTATTACTTGAATCCATGTTTGTCTCATTTAA-G
*
1961641 CACGAACTTAAACTTTACAAAAATTGGTGGG
128 CACGAACTTAGACTTTACAAAAATTGGTGGG
** * * * * * * * * * * * * **
1961672 AAG-AAAGCCTTTCTTACGAAACTAAA-GAGTCAATATGATGTATCTTTATAAGAAGACTAAGTT
1 AAGAAAAGATTTTCATGCAAAACAAAACCA-TCAATATCATTTATCCTAATGAGGAGAATGTGTT
* ** * * * * *
1961735 TATGGTGTGTAATCCTTAAAAGAATGGGGATTAGTA--TGAGTATTCATGTTTGTCTTATTTAAA
65 TATAGTGCCTAATCCCTAAAAGAATGGAGATTATTACTTGA--ATCCATGTTTGTCTCATTT--A
* * * * *
1961798 AG-ACAAACTTTGA-TTCTATCAAAAA-CGGTTGC
126 AGCACGAACTTAGACTT-TA-CAAAAATTGGTGGG
* ** * * * ** *
1961830 AAGAAAAGCA-TTTCTTGCAACCCCAAATCATCAATGTC-TTGTATCCTAAAAAAGG-GAATTTG
1 AAGAAAAG-ATTTTCATGCAAAACAAAACCATCAATATCATT-TATCCT-AATGAGGAGAATGTG
* * * * * *** ** * * *
1961892 TTTTTTGATACC-AAT-CCTGAAAAGAATGGAGACTGTTAAGAGAATTAATGCTTGCCTTATTTA
63 TTTATAG-TGCCTAATCCCT-AAAAGAATGGAGATTATTACTTGAATCCATGTTTGTCTCATTTA
* * * * * **
1961955 TGGGATGAAC-TACGATTTTA-AGGAAAATAGG-GCA
126 -AGCACGAACTTA-GACTTTACA--AAAATTGGTGGG
* * * * *
1961989 AAGAAAAGATTTTCA-GACGAAAGAAAACCATCTATATCATTTCTTCTAATGAGGAGAATGTGTT
1 AAGAAAAGATTTTCATG-CAAAACAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTT
* * * * * * *
1962053 TATAGTGCCTAATCAC-AAAATGAATGAAGATCATTACTAGAATCCATTTTTGTCTCATTCGAGG
65 TATAGTGCCTAATCCCTAAAA-GAATGGAGATTATTACTTGAATCCATGTTTGTCTCATT-TAAG
* *
1962117 CATGAACTTAGAC-TTAGCAAAAATTGGTGGC
128 CACGAACTTAGACTTTA-CAAAAATTGGTGGG
* * * * * * ** * * * **
1962148 AAG-AAAG-TCTTTCTTGCGAATCCAAAGCATCAATTTTGTCTGTCCTAATGAGAAG-CCGATGT
1 AAGAAAAGAT-TTTCATGCAAAACAAAACCATCAATATCATTTATCCTAATGAGGAGAATG-TGT
* ** * * * * *
1962210 TTATGGTG-CTAAATCCAGAAAAGAATGGGGATTAGTA--TGACTATACATGTTTGTCTTAATT-
64 TTATAGTGCCT-AATCCCTAAAAGAATGGAGATTATTACTTGA--ATCCATGTTTGTCTCATTTA
* * *
1962271 AGGAGGTAAACTTTGA-TTCTATCAAAAA-TGGT-GG
126 AGCACG--AACTTAGACTT-TA-CAAAAATTGGTGGG
* * * * * ** * *
1962305 AGGGAAAACCA-TTTCTTGCGACACCCAAGCATCAATGTC-TTGTATCCTAATGAAGG-GAATGT
1 A-AGAAAA-GATTTTCATGCAAAACAAAACCATCAATATCATT-TATCCTAATG-AGGAGAATGT
* * * * * *** * * * *
1962367 GTTT-TTGTCCCCAAT-CTTGAAAA-AATGGAGACTATTAAAAGAATCAATGCTTGCCTTATTTA
62 GTTTATAGTGCCTAATCCCT-AAAAGAATGGAGATTATTACTTGAATCCATGTTTGTCTCATTTA
* * * * * ***
1962429 TGGGATGAAC-TATGATTTTA-AGGAAAATAGG-ACA
126 -AGCACGAACTTA-GACTTTACA--AAAATTGGTGGG
*
1962463 AAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTT
1 AAGAAAAGATTTTCATGCAAAACAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTT
* * *
1962528 ATAGTGCCTAATCAC-AAAATGAATGAAGATTATTACTTGAATCCATGTTTGTCTCATTTGAGGC
66 ATAGTGCCTAATCCCTAAAA-GAATGGAGATTATTACTTGAATCCATGTTTGTCTCATTT-AAGC
* *
1962592 ACGAATTTAGACTTTACAAAAGTTGGTGGG
129 ACGAACTTAGACTTTACAAAAATTGGTGGG
* ** * * * * * * * * * * *
1962622 AAG-AACGCCTTTCTTGCGAAACCAAAGCATCAAT-TTAGTCTATCTTAAAGAGAAGACTTTGTT
1 AAGAAAAGATTTTCATGCAAAACAAAACCATCAATATCA-TTTATCCTAATGAGGAGAATGTGTT
* * * * * * *
1962685 TATGGTGCCAAATCCTTAAAAGAATGGGGATTAGT--TTGAGTATTCATGTTTGTCAT-AATTAA
65 TATAGTGCCTAATCCCTAAAAGAATGGAGATTATTACTTGA--ATCCATGTTTGTC-TCATTTAA
* * * *
1962747 GAGACAAACTTTGA-TTCTATCAAAAA-CGGT-GG
127 G-CACGAACTTAGACTT-TA-CAAAAATTGGTGGG
** * * * * * * * ** *
1962779 AAGGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAACAAAGAGAATGTGTT
1 AA-GAAAAGATTTTCATGCAAAACAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTT
* * * * *** * * * * *
1962844 T-TTGTTCCCTAATCTCGAAAA-AATGGAGATTATTAAGAGAATCGATGCTTGCCTTATTTATGG
65 TATAG-TGCCTAATCCCTAAAAGAATGGAGATTATTACTTGAATCCATGTTTGTCTCATTTA-AG
* * * * * **
1962907 GATGATC-TATGATTTTA-AGGAAAATAGG-GTA
128 CACGAACTTA-GACTTTACA--AAAATTGGTGGG
* *
1962938 AAGAAAAGATTTTCATGCAAAAGAAAACCTTCAATATCATTTATCCTAATGAGGAGAATGTGTTT
1 AAGAAAAGATTTTCATGCAAAACAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTT
* * * *
1963003 ATAGTACCTAATCCCTGAATGAA-GGAAGATTATTCCTTGAATCCATGTTTGTCTCATTTAAGCA
66 ATAGTGCCTAATCCCTAAAAGAATGG-AGATTATTACTTGAATCCATGTTTGTCTCATTTAAGCA
1963067 CGAACTTAGACTTTACAAAAATTGGTGGG
130 CGAACTTAGACTTTACAAAAATTGGTGGG
** * * * * * * * *
1963096 AAG-AAAGCCTTTCTTGCAAAACCAAAGCATCAAT-TTAGTCTATCCTAATGAGAAGACTATGTT
1 AAGAAAAGATTTTCATGCAAAACAAAACCATCAATATCA-TTTATCCTAATGAGGAGAATGTGTT
* * *
1963159 TATGGTGCCAAAT-CCTGAAAAGAATGGGGATTA
65 TATAGTGCCTAATCCCT-AAAAGAATGGAGATTA
1963192 GTATGAGTAT
Statistics
Matches: 1077, Mismatches: 334, Indels: 220
0.66 0.20 0.13
Matches are distributed among these distances:
155 1 0.00
156 22 0.02
157 182 0.17
158 453 0.42
159 387 0.36
160 30 0.03
161 2 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (158 bp):
AAGAAAAGATTTTCATGCAAAACAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTT
ATAGTGCCTAATCCCTAAAAGAATGGAGATTATTACTTGAATCCATGTTTGTCTCATTTAAGCAC
GAACTTAGACTTTACAAAAATTGGTGGG
Found at i:1963390 original size:159 final size:159
Alignment explanation
Indices: 1961745--1963395 Score: 532
Period size: 159 Copynumber: 10.4 Consensus size: 159
1961735 TATGGTGTGT
* * * * * * *** *
1961745 AATCCTTAAAAGAATGGGGATTAGTATGAGTATTC-ATGTTTGTCTTATTTAAAAGACAAACTTT
1 AATCCTGAAAAGAATGGAGATTATTATGAG-AATCGATGCTTGCCTTATTTATGGGACGAACTTT
* ** * *
1961809 GATTCTATCAAAAACGGTTGCAAGAAAAGCA-TTTCTTGCAACCCCAAATCATCAATGTCTTGTA
65 GATTCTATCAAAAACGG-TGGAAGAAAAG-ATTTTCTTGCAAAACCAAAGCATCAATGTCATGTA
* * ** * * * *
1961873 TCCTAA-AAAAGGGAATTTGTTTTTTGATACC
128 TCCTAATGAAAGAGAACGTGTTTATAGTTCCC
* * * ** * **
1961904 AATCCTGAAAAGAATGGAGACTGTTAAGAGAATTAATGCTTGCCTTATTTATGGGATGAACTACG
1 AATCCTGAAAAGAATGGAGATTATTATGAGAATCGATGCTTGCCTTATTTATGGGACGAACTTTG
* ** * * * ** * * * *
1961969 ATTTTAAGGAAAATA-GG-GCAAAGAAAAGATTTTC-AGACGAAAGAAAACCATCTATATCATTT
66 ATTCT-ATCAAAA-ACGGTG-GAAGAAAAGATTTTCTTG-CAAAACCAAAGCATCAATGTCATGT
* * * * * *
1962031 CTTCTAATG-AGGAGAATGTGTTTATAGTGCCT
127 ATCCTAATGAAAGAGAACGTGTTTATAGTTCCC
* * * ** * * * * *
1962063 AATCAC--AAAATGAATGAAGATCATTACT-AGAATCCATTTTTGTCTCATTCGA-GGCATGAAC
1 AATC-CTGAAAA-GAATGGAGATTATTA-TGAGAATCGATGCTTGCCTTATT-TATGGGACGAAC
* * * * * * * **
1962124 TTAGACT-TAGCAAAAATTGGTGGCAAG-AAAG-TCTTTCTTGCGAATCCAAAGCATCAATTTTG
62 TTTGATTCTATCAAAAA-CGGTGG-AAGAAAAGAT-TTTCTTGCAAAACCAAAGCATCAATGTCA
* * * * * * **
1962186 TCTGTCCTAATGAGA-AG-CCGATGTTTATGGTGCTA
124 TGTATCCTAATGAAAGAGAACG-TGTTTATAGTTCCC
* * * ** * * * *
1962221 AATCCAGAAAAGAATGGGGATTAGTATGACTATAC-ATGTTTGTCTTAATTA--GGAGGTAAACT
1 AATCCTGAAAAGAATGGAGATTATTATGAGAAT-CGATGCTTGCCTTATTTATGGGACG--AACT
* * * * * * *
1962283 TTGATTCTATCAAAAATGGTGGAGGGAAAACCA-TTTCTTGCGACACCCAAGCATCAATGTCTTG
63 TTGATTCTATCAAAAACGGTGGA-AGAAAA-GATTTTCTTGCAAAACCAAAGCATCAATGTCATG
* * * *
1962347 TATCCTAATG-AAGGGAATGTGTTT-TTGTCCCC
126 TATCCTAATGAAAGAGAACGTGTTTATAGTTCCC
* * ** * * *
1962379 AATCTTGAAAA-AATGGAGACTATTAAAAGAATCAATGCTTGCCTTATTTATGGGATGAACTATG
1 AATCCTGAAAAGAATGGAGATTATTATGAGAATCGATGCTTGCCTTATTTATGGGACGAACTTTG
* ** *** * ** * * *
1962443 ATTTTAAGGAAAATA-GGACAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTAT
66 ATTCT-ATCAAAA-ACGGTGGAAGAAAAGATTTTCTTGCAAAACCAAAGCATCAATGTCATGTAT
* * * *
1962507 CCTAATG-AGGAGAATGTGTTTATAGTGCCT
129 CCTAATGAAAGAGAACGTGTTTATAGTTCCC
* * * * * * *
1962537 AATCAC--AAAATGAATGAAGATTATTACT-TGAATCCATGTTTGTCTCATTTGA-GGCACGAA-
1 AATC-CTGAAAA-GAATGGAGATTATTA-TGAGAATCGATGCTTGCCTTATTT-ATGGGACGAAC
** * ** * *
1962597 TTTAGACTT-TA-CAAAAGTTGGTGGGAAG-AACGCCTTTCTTGCGAAACCAAAGCATCAAT-TT
62 TTT-GA-TTCTATCAAAA-ACGGT-GGAAGAAAAGATTTTCTTGCAAAACCAAAGCATCAATGTC
* * * * * * * *
1962658 AGTCTATCTTAAAGAGA-AG-ACTTTGTTTATGGTGCCA
123 A-TGTATCCTAATGAAAGAGAAC-GTGTTTATAGTTCCC
* * * * * * * * * *
1962695 AATCCTTAAAAGAATGGGGATTAGTT-TGAGTATTC-ATGTTTGTCATAATTAAGAGACAAACTT
1 AATCCTGAAAAGAATGGAGATTA-TTATGAG-AATCGATGCTTGCCTTATTTATGGGACGAACTT
** * *
1962758 TGATTCTATCAAAAACGGTGGAAGGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCATGTA
64 TGATTCTATCAAAAACGGTGGAA-GAAAAGATTTTCTTGCAAAACCAAAGCATCAATGTCATGTA
* * *
1962823 TCCTAA-CAAAGAGAATGTGTTT-TTGTTCCC
128 TCCTAATGAAAGAGAACGTGTTTATAGTTCCC
* * * *
1962853 TAAT-CTCGAAAA-AATGGAGATTATTAAGAGAATCGATGCTTGCCTTATTTATGGGATGATCTA
1 -AATCCT-GAAAAGAATGGAGATTATTATGAGAATCGATGCTTGCCTTATTTATGGGACGAACTT
* ** * * * ** * * * *
1962916 TGATTTTAAGGAAAATAGGGT-AAAGAAAAGATTTTCATGCAAAAGAAAACCTTCAATATCATTT
64 TGATTCT-ATCAAAA-ACGGTGGAAGAAAAGATTTTCTTGCAAAACCAAAGCATCAATGTCATGT
* * * *
1962980 ATCCTAATG-AGGAGAATGTGTTTATAGTACCT
127 ATCCTAATGAAAGAGAACGTGTTTATAGTTCCC
* * * * * * * * *
1963012 AATCCCTG-AATGAA-GGAAGATTATTCCT-TGAATCCATGTTTGTCTCATTTA-AGCACGAACT
1 AAT-CCTGAAAAGAATGG-AGATTATT-ATGAGAATCGATGCTTGCCTTATTTATGGGACGAACT
* * ** *
1963073 TAGACTT-TA-CAAAAATTGGTGGGAAG-AAAGCCTTTCTTGCAAAACCAAAGCATCAAT-TTAG
63 TTGA-TTCTATCAAAAA-CGGT-GGAAGAAAAGATTTTCTTGCAAAACCAAAGCATCAATGTCA-
* * * * * *
1963134 TCTATCCTAATGAGA-AG-ACTATGTTTATGGTGCCA
124 TGTATCCTAATGAAAGAGAAC-GTGTTTATAGTTCCC
* * * * * * * * *
1963169 AATCCTGAAAAGAATGGGGATTAGTATGAGTATTGATGTTTACCTTATTTAAGAGACAAACTTTG
1 AATCCTGAAAAGAATGGAGATTATTATGAGAATCGATGCTTGCCTTATTTATGGGACGAACTTTG
* * * ** *
1963234 ATTCTATCAAAAACCGTTGCAAGAAATGATTTTCTTGTGACACCAAAGCATCAATGTCATGTATC
66 ATTCTATCAAAAA-CGGTGGAAGAAAAGATTTTCTTGCAAAACCAAAGCATCAATGTCATGTATC
1963299 CTAATGAAAG-GAACGTGTTTATAGTTCCC
130 CTAATGAAAGAGAACGTGTTTATAGTTCCC
* * * *
1963328 AATCTTGAAAAGAATGGAGATTATTATGAGAATCAATGCTTGCCTTATTTATGGGATGAACTTCG
1 AATCCTGAAAAGAATGGAGATTATTATGAGAATCGATGCTTGCCTTATTTATGGGACGAACTTTG
1963393 ATT
66 ATT
1963396 TTAAGGAATA
Statistics
Matches: 1070, Mismatches: 327, Indels: 190
0.67 0.21 0.12
Matches are distributed among these distances:
155 1 0.00
156 21 0.02
157 203 0.19
158 353 0.33
159 465 0.43
160 26 0.02
161 1 0.00
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.31
Consensus pattern (159 bp):
AATCCTGAAAAGAATGGAGATTATTATGAGAATCGATGCTTGCCTTATTTATGGGACGAACTTTG
ATTCTATCAAAAACGGTGGAAGAAAAGATTTTCTTGCAAAACCAAAGCATCAATGTCATGTATCC
TAATGAAAGAGAACGTGTTTATAGTTCCC
Found at i:1965083 original size:12 final size:11
Alignment explanation
Indices: 1965061--1965136 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
1965051 AGAGAAAGAA
*
1965061 GAGAGAGGAGG
1 GAGATAGGAGG
1965072 GATGATAGGAGG
1 GA-GATAGGAGG
*
1965084 AGAGACAGGA--
1 -GAGATAGGAGG
*
1965094 GAGATAGTA--
1 GAGATAGGAGG
1965103 GAGATAGGAGG
1 GAGATAGGAGG
1965114 GATGATAGGAGG
1 GA-GATAGGAGG
*
1965126 AGAGACAGGAG
1 -GAGATAGGAG
1965137 AGATATAGAG
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:1965112 original size:42 final size:42
Alignment explanation
Indices: 1965051--1965168 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
1965041 TAGCCCTCAA
* *
1965051 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
1965093 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
1965135 AGAGATA-TAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
1965169 GAGAGAAGAA
Statistics
Matches: 71, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
41 25 0.35
42 46 0.65
ACGTcount: A:0.42, C:0.03, G:0.47, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:1968913 original size:13 final size:13
Alignment explanation
Indices: 1968895--1968920 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1968885 TACAGCAAGT
1968895 ATGTATCGATACA
1 ATGTATCGATACA
1968908 ATGTATCGATACA
1 ATGTATCGATACA
1968921 CAAAAAATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1971177 original size:21 final size:21
Alignment explanation
Indices: 1971139--1971183 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
1971129 TTGCAAGTTG
*
1971139 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
1971161 AAATAATGAA-TTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
1971181 AAA
1 AAA
1971184 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 7 0.33
22 9 0.43
ACGTcount: A:0.56, C:0.04, G:0.18, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:1973007 original size:15 final size:15
Alignment explanation
Indices: 1972987--1973017 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
1972977 TAAAAATGTC
*
1972987 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
1973002 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
1973017 C
1 C
1973018 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:1975100 original size:20 final size:20
Alignment explanation
Indices: 1975031--1975110 Score: 70
Period size: 20 Copynumber: 3.8 Consensus size: 20
1975021 AATGTCCAAA
*
1975031 ATGTATCGATACATGTTTCT
1 ATGTATCGATACATTTTTCT
* *
1975051 GTGTATCGATACATCTGGAAATTCT
1 ATGTATCGATACAT-T----TTTCT
1975076 ATGTATCGATACATTTTTCT
1 ATGTATCGATACATTTTTCT
* *
1975096 TTGTACCGATACATT
1 ATGTATCGATACATT
1975111 GTATCGATAC
Statistics
Matches: 48, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
20 30 0.62
24 1 0.02
25 17 0.35
ACGTcount: A:0.26, C:0.16, G:0.15, T:0.42
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCT
Found at i:1975118 original size:13 final size:13
Alignment explanation
Indices: 1975096--1975134 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
1975086 ACATTTTTCT
*
1975096 TTGTACCGATACA
1 TTGTATCGATACA
1975109 TTGTATCGATACA
1 TTGTATCGATACA
*
1975122 CTGTATCGATACA
1 TTGTATCGATACA
1975135 GGGTGATTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.33
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:1975279 original size:21 final size:21
Alignment explanation
Indices: 1975255--1975301 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
1975245 AAATCTTTTG
1975255 CAAAAT-ACTT-GTTTTTCACTT
1 CAAAATAACTTCGTTTTTCA--T
1975276 C-AAATAACTTCGTTTTTCAT
1 CAAAATAACTTCGTTTTTCAT
1975296 CAAAAT
1 CAAAAT
1975302 CAGCATTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
20 6 0.26
21 9 0.39
22 8 0.35
ACGTcount: A:0.34, C:0.19, G:0.04, T:0.43
Consensus pattern (21 bp):
CAAAATAACTTCGTTTTTCAT
Found at i:1975298 original size:20 final size:19
Alignment explanation
Indices: 1975257--1975299 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
1975247 ATCTTTTGCA
1975257 AAATACTTGTTTTTCACTTC
1 AAATACTTGTTTTTCAC-TC
1975277 AAATAACTTCGTTTTTCA-TC
1 AAAT-ACTT-GTTTTTCACTC
1975297 AAA
1 AAA
1975300 ATCAGCATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
20 9 0.43
21 4 0.19
22 8 0.38
ACGTcount: A:0.33, C:0.19, G:0.05, T:0.44
Consensus pattern (19 bp):
AAATACTTGTTTTTCACTC
Found at i:1977694 original size:13 final size:13
Alignment explanation
Indices: 1977676--1977701 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1977666 TACAGCAAGT
1977676 ATGTATCGATACA
1 ATGTATCGATACA
1977689 ATGTATCGATACA
1 ATGTATCGATACA
1977702 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1982705 original size:13 final size:13
Alignment explanation
Indices: 1982687--1982712 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1982677 CAATTTTTTG
1982687 TGTATCGATACAT
1 TGTATCGATACAT
1982700 TGTATCGATACAT
1 TGTATCGATACAT
1982713 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1985278 original size:13 final size:13
Alignment explanation
Indices: 1985260--1985285 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1985250 ATAATCACCC
1985260 TGTATCGATACAA
1 TGTATCGATACAA
1985273 TGTATCGATACAA
1 TGTATCGATACAA
1985286 AGAAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1987384 original size:15 final size:15
Alignment explanation
Indices: 1987364--1987394 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
1987354 ATTTCGTTTG
*
1987364 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
1987379 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
1987394 G
1 G
1987395 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:1989226 original size:21 final size:21
Alignment explanation
Indices: 1989197--1989241 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
1989187 AAGTTTTCAT
*
1989197 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
1989217 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
1989239 TTT
1 TTT
1989242 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:1989940 original size:33 final size:33
Alignment explanation
Indices: 1989898--1989969 Score: 135
Period size: 33 Copynumber: 2.2 Consensus size: 33
1989888 GACACTTGCC
1989898 TTCTTCGGTGGCTCTTGCACATGAGCATGCTTA
1 TTCTTCGGTGGCTCTTGCACATGAGCATGCTTA
1989931 TTCTTCGGTGGCTCTTGCACATGAGCATGCTTA
1 TTCTTCGGTGGCTCTTGCACATGAGCATGCTTA
*
1989964 ATCTTC
1 TTCTTC
1989970 ATTTCATAGG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.15, C:0.25, G:0.22, T:0.38
Consensus pattern (33 bp):
TTCTTCGGTGGCTCTTGCACATGAGCATGCTTA
Found at i:1991511 original size:13 final size:13
Alignment explanation
Indices: 1991493--1991518 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1991483 CAATTTTTTG
1991493 TGTATCGATACAT
1 TGTATCGATACAT
1991506 TGTATCGATACAT
1 TGTATCGATACAT
1991519 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1997981 original size:9 final size:9
Alignment explanation
Indices: 1997969--1998029 Score: 65
Period size: 9 Copynumber: 7.1 Consensus size: 9
1997959 CTTTCTCTAT
1997969 TATCTCTCC
1 TATCTCTCC
1997978 TATCTCTCC
1 TATCTCTCC
* *
1997987 T-CCTAT-C
1 TATCTCTCC
*
1997994 -ATCCCTCC
1 TATCTCTCC
*
1998002 TATCTCTAC
1 TATCTCTCC
1998011 TATCTCTCC
1 TATCTCTCC
1998020 TATCTCTCC
1 TATCTCTCC
1998029 T
1 T
1998030 CCTATCATCC
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
7 3 0.07
8 4 0.10
9 34 0.83
ACGTcount: A:0.13, C:0.44, G:0.00, T:0.43
Consensus pattern (9 bp):
TATCTCTCC
Found at i:1997989 original size:12 final size:12
Alignment explanation
Indices: 1997974--1998050 Score: 71
Period size: 12 Copynumber: 6.9 Consensus size: 12
1997964 TCTATTATCT
1997974 CTCCTATCTCTC
1 CTCCTATCTCTC
1997986 CTCCTATCATC-C
1 CTCCTATC-TCTC
1997998 CTCCTA--TCT-
1 CTCCTATCTCTC
*
1998007 CTACTA--TCT-
1 CTCCTATCTCTC
1998016 CTCCTATCTCTC
1 CTCCTATCTCTC
1998028 CTCCTATCATC-C
1 CTCCTATC-TCTC
1998040 CTCCTATCTCT
1 CTCCTATCTCT
1998051 TCTTTCTCTT
Statistics
Matches: 56, Mismatches: 2, Indels: 14
0.78 0.03 0.19
Matches are distributed among these distances:
9 15 0.27
11 5 0.09
12 32 0.57
13 4 0.07
ACGTcount: A:0.13, C:0.47, G:0.00, T:0.40
Consensus pattern (12 bp):
CTCCTATCTCTC
Found at i:1997997 original size:42 final size:42
Alignment explanation
Indices: 1997941--1998059 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
1997931 TTCTTCTCTC
** * *
1997941 CTCCTCCCGTCATCCCTCCTTTCTCTATTATCTCTCCTATCT
1 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTATCT
1997983 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTATCT
1 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTATCT
* *
1998025 CTCCTCCTATCATCCCTCCTATCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCT
1998060 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.11, C:0.45, G:0.01, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTATCT
Found at i:2002057 original size:157 final size:158
Alignment explanation
Indices: 2001862--2002554 Score: 408
Period size: 157 Copynumber: 4.4 Consensus size: 158
2001852 AAAAGAAAAC
* * * * *
2001862 CATCAATATCA-TTTATCCTAACGAGGAGAATGTGTTTATTATGCCTAATCACCAAATGAATGAA
1 CATCAATGTCAGTCTATCCTAATGAGAAGAATGTGTTTATTATGCCTAATC-CCAAAAGAATGAA
2001926 GATTATTACTTGAATCCATGTTTGTCTCATTTGAG-GCACGAACTTAGACTTTACAAAAATTAGT
65 GATTATTACTTGAATCCATGTTTGTCTCATTTGAGAGCACGAACTTAGACTTTACAAAAA-TAGT
2001990 GGGAA-AAAGCCTTTCTAGCTAAACCAAAG
129 GGGAAGAAAGCCTTTCTAGCTAAACCAAAG
* * * * ** * * **
2002019 CATCAAT-TTAGTCAATCCTAATGAGAAGACTTTGTTTATGGTGCCAAATCCTTAAAAGAATGGG
1 CATCAATGTCAGTCTATCCTAATGAGAAGAATGTGTTTATTATGCCTAATCC-CAAAAGAATGAA
* * * * *
2002083 GATTAGTA--TGAGTATTCATGTTTGTCAT-AATTGAGAG-ACAAACTTTGA-TTCTATCAAAAA
65 GATTATTACTTGA--ATCCATGTTTGTC-TCATTTGAGAGCACGAACTTAGACTT-TA-CAAAAA
* * * * *
2002143 TGGT-GGAAGGAAAACCTTTTCTTGCGACACCAAAG
125 TAGTGGGAA-GAAAGCC-TTTCTAGCTAAACCAAAG
** * * * * * * ** * *
2002178 TGTCAATGTCA-TGTATCCTAACGA-AGAGAATATGTTT-TTGTTCCCAATCTTAAAAAAATGGA
1 CATCAATGTCAGTCTATCCTAATGAGA-AGAATGTGTTTATTATGCCTAATCCCAAAAGAATGAA
*** * * * * * *
2002240 GATTATTAAGAGAATCAATGCTTGCCTTATTTATGAGATGAAC-AAC--A-ATTTTA-AGGAAAA
65 GATTATTACTTGAATCCATGTTTGTCTCA-TT-TGAGA-GCACGAACTTAGACTTTACA--AAAA
* ** * ** *
2002300 TAG-GGTAAAGAAAAGATTTTC-ATGCAAAAGAAAAC
125 TAGTGG-GAAG-AAAGCCTTTCTA-GCTAAACCAAAG
* * * *
2002335 CATCAATGTCA-TTTACCCTAATGAGGAGAATGTGTTTA-TAGTGCCTAATCACCAAATGAATGA
1 CATCAATGTCAGTCTATCCTAATGAGAAGAATGTGTTTATTA-TGCCTAATC-CCAAAAGAATGA
* *
2002398 AGATTATTACTTGAATCTATGTTTGTCTCATTTGAG-GCACGAACTTAGACTTTACAAAAATTGG
64 AGATTATTACTTGAATCCATGTTTGTCTCATTTGAGAGCACGAACTTAGACTTTACAAAAA-TAG
*
2002462 TGGGAAGAAAGCCTTTCTTGCTAAACCAAAG
128 TGGGAAGAAAGCCTTTCTAGCTAAACCAAAG
* * * ** * *
2002493 CATCAAT-TTAGTCTATCCTAATGAGAAGACTTTGTTTATGGTGCCAAATCCTTAAAAGAATG
1 CATCAATGTCAGTCTATCCTAATGAGAAGAATGTGTTTATTATGCCTAATCC-CAAAAGAATG
2002555 GGGATTAGTA
Statistics
Matches: 393, Mismatches: 101, Indels: 83
0.68 0.18 0.14
Matches are distributed among these distances:
155 7 0.02
156 13 0.03
157 170 0.43
158 106 0.27
159 86 0.22
160 9 0.02
161 2 0.01
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (158 bp):
CATCAATGTCAGTCTATCCTAATGAGAAGAATGTGTTTATTATGCCTAATCCCAAAAGAATGAAG
ATTATTACTTGAATCCATGTTTGTCTCATTTGAGAGCACGAACTTAGACTTTACAAAAATAGTGG
GAAGAAAGCCTTTCTAGCTAAACCAAAG
Found at i:2002242 original size:944 final size:923
Alignment explanation
Indices: 2000413--2002580 Score: 2847
Period size: 944 Copynumber: 2.3 Consensus size: 923
2000403 CAATCCTGAA
* * * **
2000413 AACATCGATTTTAAGGAAAATAGGGCAACGAAAAGATTTTCATGCAAAAGAAAACCATCAGGATC
1 AACAACGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATC
* ** * * * *
2000478 ATTTATCTTAATGAGGAGAATGTGTTTACA-CTGCCTAAAAACAAAATGAACGAAGATCATTATT
66 ATTTATC-TAATGAGGAGAATGTGTTTATAGC-GCCTAATCACCAAATGAATGAAGATTATTCTT
* * * * *
2000542 AGAACCCATGCTTGTCTCATTTGAGGCACAAAC-TAAATTTTTACAAAAATTGGTGGGAAGAAAG
129 -GAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGA-CTTTACAAAAATTGGTGGGAAGAAAG
** * * * *
2000606 CCTTTCTTAAGAAACTAAAG-AGTCAA---CATC-AT-GT-ATAAGAAGACTAAGTTTATGGTGC
192 CCTTTCTTGCGAAACCAAAGCA-TCAATTTCATCTATCCTAATGAGAAGACTATGTTTATGGTGC
** ** *
2000664 GTAATCCTCAAAAGAATGAGT-ATTAGCGTGAGTATTCATGTTTGCCTTAATCAAGAGCCAAACT
256 CAAATCCT-AAAAGAATG-GTGATTAGTATGAGTATTCATGTTTGCCTTAATCAAGAGACAAACT
* ** * *
2000728 TTGATTCTATAAAAAACGGTGGAAGGAAAACCTTTTCTTGTGACACCAAAGCATCAATGTCATGT
319 TTGATTCAATAAAAAACAATGGAAGGAAAACCTTTTCTTGCGACACCAAAGCAGCAATGTCATGT
** * * * *
2000793 ATCCTAATGAAGGGAATGTGTTTTTGTTCCCAATCTTGAAAAAATGGAGATTATTAAGAGAATCA
384 ATCCTAACAAACGAAAAGTGTTTTTGTTCCCAATCCTGAAAAAATGGAG---ATTAAGAGAATCA
* *
2000858 ATGCTTGCCTTATTTATGGGATGAACTACGAAAGAAAAGATTTTAATGCAAAAGAAAACCATCAA
446 ATGCTTGCCATATTTATGGGATGAAATACGAAAGAAAAGATTTTAATGCAAAAGAAAACCATCAA
* *
2000923 TATCATTTATCCTAATGAGGAGAATGTGTATATGGTGCCTAATCACCAAATGAATGAAGATTATT
511 TATCATTTATCCTAACGAGGAGAATGTGTATATGATGCCTAATCACCAAATGAATGAAGATTATT
* * *
2000988 ACTTGAATCCAAGTTTTTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAA
576 ACTTGAATCCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTAGTGGGAAGAA
* * * *
2001053 AGCCTTTCTTGTGAAACCAAAGCATCCATTTAGTCTATCCTAATGAGAAGACTATGTTTGTGGTG
641 AGCCTTTCTAGTGAAACCAAAGCATCAATTTAGTCAATCCTAATGAGAAGACTATGTTTATGGTG
* * ** *
2001118 CCAATTCCTGAAAAGAATTGGGATTAGTATGAGTATTCATGTTTGTTTTATTTAAGAGACAAACT
706 CCAAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCATAATTAAGAGACAAACT
* * *
2001183 TTGATTCTATCAAAAACAGTTGCAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGT
771 TTGATTCTATCAAAAACAGGTGCAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCATGT
* * * * * * *
2001248 ATCCTAATGAAGGGAATGTATTTTTGTTCCTAATTTTGAAAAAGTGGAGATTATTAAGAAAATCA
836 ATCCTAACGAAGAGAATATATTTTTGTTCCCAATCTTAAAAAAATGGAGATTATTAAGAAAATCA
* *
2001313 ATGCTTGCCTTGTTTATGGGATG
901 ATGCTTGCCTTATTTATGAGATG
* * * *
2001336 AACTACGATTTTAAGGGAAATAGGGTAAAAAAAAGATTTTCATGCAAAAGAAAACCATCAATATT
1 AACAACGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATC
* * *
2001401 ATTTATTCTAATGAGGAGAATGTGTGTATGGCGCCTAATCACCAAATGAATGAAGATTTTTCCTT
66 ATTTA-TCTAATGAGGAGAATGTGTTTATAGCGCCTAATCACCAAATGAATGAAGATTATT-CTT
* * * *
2001466 GAATCCATGTTTGTCTCACTTGAGGCACGAACTTAGACTTTAAAAAAATTGGAGGGAAGAAAGCA
129 GAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCC
* * *
2001531 TTTCTTGCGAAACCAAAGCATCAATTTCCTCTATCCTAATGGGAAGACTATGTTTGTGGTGCCAA
194 TTTCTTGCGAAACCAAAGCATCAATTTCATCTATCCTAATGAGAAGACTATGTTTATGGTGCCAA
* * * * * *
2001596 AACCATAAAAGAACGGTGATTAGTATGACTATTCATGTTTGCCTTATTTAAGAGACAAAGTTTGA
259 ATCC-TAAAAGAATGGTGATTAGTATGAGTATTCATGTTTGCCTTAATCAAGAGACAAACTTTGA
* **
2001661 TTCAATCAAAAACAATGGAAGGAAAACCTTTTCTTGCGACACCAAAGTGGCAATGTCATGTATCC
323 TTCAATAAAAAACAATGGAAGGAAAACCTTTTCTTGCGACACCAAAGCAGCAATGTCATGTATCC
2001726 TAACAAACGAAAAGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAG-TTAAGAGAATC-ATGCT
388 TAACAAACGAAAAGTGTTTTT-GTTCCCAATCCTGAAAA-AATGGAGATTAAGAGAATCAATGCT
* * *
2001789 TGCCATATTTAAGTGATGAACTTCTATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAA
451 TGCCATATTT-A-TG--G------GA---T---G-AAATA-CG-AAAGAAAAGATTTTAATGCAA
* *
2001854 AAGAAAACCATCAATATCATTTATCCTAACGAGGAGAATGTGTTTATTATGCCTAATCACCAAAT
497 AAGAAAACCATCAATATCATTTATCCTAACGAGGAGAATGTGTATATGATGCCTAATCACCAAAT
*
2001919 GAATGAAGATTATTACTTGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAA
562 GAATGAAGATTATTACTTGAATCCAAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAA
2001984 ATTAGTGGGAA-AAAGCCTTTCTAGCT-AAACCAAAGCATCAATTTAGTCAATCCTAATGAGAAG
627 ATTAGTGGGAAGAAAGCCTTTCTAG-TGAAACCAAAGCATCAATTTAGTCAATCCTAATGAGAAG
* *
2002047 ACTTTGTTTATGGTGCCAAATCCTTAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCATA
691 ACTATGTTTATGGTGCCAAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCATA
* * *
2002112 ATTGAGAGACAAACTTTGATTCTATCAAAAA-TGGTGGAAGGAAAACCTTTTCTTGCGACACCAA
756 ATTAAGAGACAAACTTTGATTCTATCAAAAACAGGTGCAA-GAAAACCTTTTCTTGCGACACCAA
** *
2002176 AGTGTCAATGTCATGTATCCTAACGAAGAGAATATGTTTTTGTTCCCAATCTTAAAAAAATGGAG
820 AGCATCAATGTCATGTATCCTAACGAAGAGAATATATTTTTGTTCCCAATCTTAAAAAAATGGAG
*
2002241 ATTATTAAGAGAATCAATGCTTGCCTTATTTATGAGATG
885 ATTATTAAGAAAATCAATGCTTGCCTTATTTATGAGATG
* *
2002280 AACAACAATTTTAAGGAAAATAGGGTAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATGTC
1 AACAACGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATC
* *
2002345 ATTTACCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACCAAATGAATGAAGATTATTACTT
66 ATTTA-TCTAATGAGGAGAATGTGTTTATAGCGCCTAATCACCAAATGAATGAAGATTATT-CTT
*
2002410 GAATCTATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCC
129 GAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCC
* *
2002475 TTTCTTGCTAAACCAAAGCATCAATTT-AGTCTATCCTAATGAGAAGACTTTGTTTATGGTGCCA
194 TTTCTTGCGAAACCAAAGCATCAATTTCA-TCTATCCTAATGAGAAGACTATGTTTATGGTGCCA
*
2002539 AATCCTTAAAAGAATGGGGATTAGTATGAGTATTCATGTTTG
258 AATCC-TAAAAGAATGGTGATTAGTATGAGTATTCATGTTTG
2002581 TCGTAATTGA
Statistics
Matches: 1075, Mismatches: 133, Indels: 53
0.85 0.11 0.04
Matches are distributed among these distances:
923 174 0.16
924 9 0.01
926 17 0.02
927 14 0.01
928 5 0.00
929 145 0.13
930 18 0.02
931 7 0.01
936 1 0.00
939 1 0.00
942 1 0.00
943 9 0.01
944 520 0.48
945 154 0.14
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (923 bp):
AACAACGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATC
ATTTATCTAATGAGGAGAATGTGTTTATAGCGCCTAATCACCAAATGAATGAAGATTATTCTTGA
ATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTT
TCTTGCGAAACCAAAGCATCAATTTCATCTATCCTAATGAGAAGACTATGTTTATGGTGCCAAAT
CCTAAAAGAATGGTGATTAGTATGAGTATTCATGTTTGCCTTAATCAAGAGACAAACTTTGATTC
AATAAAAAACAATGGAAGGAAAACCTTTTCTTGCGACACCAAAGCAGCAATGTCATGTATCCTAA
CAAACGAAAAGTGTTTTTGTTCCCAATCCTGAAAAAATGGAGATTAAGAGAATCAATGCTTGCCA
TATTTATGGGATGAAATACGAAAGAAAAGATTTTAATGCAAAAGAAAACCATCAATATCATTTAT
CCTAACGAGGAGAATGTGTATATGATGCCTAATCACCAAATGAATGAAGATTATTACTTGAATCC
AAGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTAGTGGGAAGAAAGCCTTTCTA
GTGAAACCAAAGCATCAATTTAGTCAATCCTAATGAGAAGACTATGTTTATGGTGCCAAATCCTG
AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCATAATTAAGAGACAAACTTTGATTCTAT
CAAAAACAGGTGCAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAACGA
AGAGAATATATTTTTGTTCCCAATCTTAAAAAAATGGAGATTATTAAGAAAATCAATGCTTGCCT
TATTTATGAGATG
Found at i:2005404 original size:12 final size:11
Alignment explanation
Indices: 2005382--2005457 Score: 61
Period size: 12 Copynumber: 6.9 Consensus size: 11
2005372 AGAGAAAGAA
*
2005382 GAGAGAGGAGG
1 GAGATAGGAGG
2005393 GATGATAGGAGG
1 GA-GATAGGAGG
2005405 AGAGATAGGA--
1 -GAGATAGGAGG
*
2005415 GAGATAGTA--
1 GAGATAGGAGG
2005424 GAGATAGGAGG
1 GAGATAGGAGG
2005435 GATGATAGGAGG
1 GA-GATAGGAGG
*
2005447 AGAGACAGGAG
1 -GAGATAGGAG
2005458 AGATAATAGA
Statistics
Matches: 55, Mismatches: 4, Indels: 11
0.79 0.06 0.16
Matches are distributed among these distances:
9 16 0.29
11 4 0.07
12 31 0.56
13 4 0.07
ACGTcount: A:0.39, C:0.01, G:0.49, T:0.11
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:2005418 original size:33 final size:30
Alignment explanation
Indices: 2005372--2005462 Score: 76
Period size: 33 Copynumber: 2.8 Consensus size: 30
2005362 TAGCCCTCAA
* *
2005372 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGG
1 AGAGATAGGAGAGAGAGGA--GA-GATAGGAGG
* *
2005405 AGAGATAGGAGAGATAGTAGAGATAGGAGG
1 AGAGATAGGAGAGAGAGGAGAGATAGGAGG
2005435 -GATGATAGGAGGAGAGACAGGAGAGATA
1 AGA-GATAGGA-GAGAG--AGGAGAGATA
2005463 ATAGAGAGAG
Statistics
Matches: 48, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
29 2 0.04
30 16 0.33
31 6 0.12
33 24 0.50
ACGTcount: A:0.44, C:0.01, G:0.45, T:0.10
Consensus pattern (30 bp):
AGAGATAGGAGAGAGAGGAGAGATAGGAGG
Found at i:2005427 original size:11 final size:9
Alignment explanation
Indices: 2005402--2005462 Score: 56
Period size: 9 Copynumber: 7.1 Consensus size: 9
2005392 GGATGATAGG
2005402 AGGAGAGAT
1 AGGAGAGAT
2005411 AGGAGAGAT
1 AGGAGAGAT
*
2005420 AGTAGAGAT
1 AGGAGAGAT
*
2005429 AGGAGGGAT
1 AGGAGAGAT
* *
2005438 --GATAG-G
1 AGGAGAGAT
*
2005444 AGGAGAGAC
1 AGGAGAGAT
2005453 AGGAGAGAT
1 AGGAGAGAT
2005462 A
1 A
2005463 ATAGAGAGAG
Statistics
Matches: 40, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
7 3 0.08
8 4 0.10
9 33 0.82
ACGTcount: A:0.43, C:0.02, G:0.44, T:0.11
Consensus pattern (9 bp):
AGGAGAGAT
Found at i:2005433 original size:42 final size:42
Alignment explanation
Indices: 2005372--2005490 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
2005362 TAGCCCTCAA
* * *
2005372 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGATAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
2005414 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
2005456 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
2005491 GAGAGAAGAA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.43, C:0.02, G:0.46, T:0.09
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:2012351 original size:12 final size:11
Alignment explanation
Indices: 2012329--2012404 Score: 61
Period size: 12 Copynumber: 6.9 Consensus size: 11
2012319 AGAGAAAGAA
*
2012329 GAGAGAGGAGG
1 GAGATAGGAGG
2012340 GATGATAGGAGG
1 GA-GATAGGAGG
2012352 AGAGATAGGA--
1 -GAGATAGGAGG
*
2012362 GAGATAGTA--
1 GAGATAGGAGG
2012371 GAGATAGGAGG
1 GAGATAGGAGG
2012382 GAGGATAGGAGG
1 GA-GATAGGAGG
*
2012394 AGAGACAGGAG
1 -GAGATAGGAG
2012405 AGATAATAGA
Statistics
Matches: 55, Mismatches: 4, Indels: 11
0.79 0.06 0.16
Matches are distributed among these distances:
9 16 0.29
11 4 0.07
12 31 0.56
13 4 0.07
ACGTcount: A:0.39, C:0.01, G:0.50, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:2012365 original size:33 final size:30
Alignment explanation
Indices: 2012319--2012409 Score: 76
Period size: 33 Copynumber: 2.8 Consensus size: 30
2012309 TAGCCCTCAA
* *
2012319 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGG
1 AGAGATAGGAGAGAGAGGA--GA-GATAGGAGG
* *
2012352 AGAGATAGGAGAGATAGTAGAGATAGGAGG
1 AGAGATAGGAGAGAGAGGAGAGATAGGAGG
2012382 -GAGGATAGGAGGAGAGACAGGAGAGATA
1 AGA-GATAGGA-GAGAG--AGGAGAGATA
2012410 ATAGAGAGAG
Statistics
Matches: 48, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
29 2 0.04
30 16 0.33
31 6 0.12
33 24 0.50
ACGTcount: A:0.44, C:0.01, G:0.46, T:0.09
Consensus pattern (30 bp):
AGAGATAGGAGAGAGAGGAGAGATAGGAGG
Found at i:2012374 original size:11 final size:9
Alignment explanation
Indices: 2012349--2012409 Score: 56
Period size: 9 Copynumber: 7.1 Consensus size: 9
2012339 GGATGATAGG
2012349 AGGAGAGAT
1 AGGAGAGAT
2012358 AGGAGAGAT
1 AGGAGAGAT
*
2012367 AGTAGAGAT
1 AGGAGAGAT
*
2012376 AGGAG-G-G
1 AGGAGAGAT
* *
2012383 AGGATAG-G
1 AGGAGAGAT
*
2012391 AGGAGAGAC
1 AGGAGAGAT
2012400 AGGAGAGAT
1 AGGAGAGAT
2012409 A
1 A
2012410 ATAGAGAGAG
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
7 4 0.09
8 9 0.21
9 30 0.70
ACGTcount: A:0.43, C:0.02, G:0.46, T:0.10
Consensus pattern (9 bp):
AGGAGAGAT
Found at i:2012380 original size:42 final size:42
Alignment explanation
Indices: 2012319--2012437 Score: 175
Period size: 42 Copynumber: 2.8 Consensus size: 42
2012309 TAGCCCTCAA
* * *
2012319 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGATAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
2012361 AGAGATAGTAGAGATAGGAGGGAGGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
2012403 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
2012438 GAGAGAAGAA
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 68 1.00
ACGTcount: A:0.43, C:0.02, G:0.47, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:2014708 original size:474 final size:472
Alignment explanation
Indices: 2012487--2014713 Score: 2690
Period size: 474 Copynumber: 4.7 Consensus size: 472
2012477 CGGTGGAGAA
* * *
2012487 AATGAGGAGAATGTGTTTATAGTGCCTAATCACCAAATGAATGAAGATTATTACTTGAATCTATG
1 AATGAGGAGAATGTGTTT-TAGTGCCTAATCACAAAATGAATGTAGATTATTAC-TGAATCCATG
2012552 TTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCG
64 TTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCG
** *
2012617 AAACCAAAGCATCAATTT-AGTCTATCCTAATGAGAAGACTATGTTTATGGTGCCAAATCTTGAA
129 AAACCAAAGCATCAATTTCA-TCTATCCTAATGAGAAGACTATGTTTATGGTGCGTAA-CCTGAA
* *
2012681 AAGAAT-GGGATTAGTATGAGTTTTCATGTTTGTCTTATTTAAGAGACAAGCTTTGATTCTATCA
192 AAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
** * * * * ** *
2012745 AAAACAATTGCAAGAAAAACTTTTCTTGCGACACCATAGTATTGATGTCATGCATCCTAATGAAA
257 AAAAC-GGTGCAAGAAAACCTTTTCTTGCGACCCCAAAGCATCAATGTCATGTATCCTAATGAAA
* *
2012810 GGAATGTGTTTATGGTTCCCAATCTTGAAAATAATGGAGAC---T-A-AG---C-A------CCT
321 GGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTAAGAGAATCAATGCTTGCCT
* * * * * *
2012860 TATTTAAGGGATGAACTTTGATTTTAATGAAAATAGGGCAAAGAAAATATTTTCAAGCAAATGAA
386 TATTTATGGGATGAACTTCGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAA
* *
2012925 AACCAACAATATCTTTTATACT
451 AACCATCAATATCATTTATACT
* * * *
2012947 AATGAGGAGAATGTGTTCTTAGTGCCTAATCACAAAATAAATGAAGCTCATTACTAGAATCCATG
1 AATGAGGAGAATGTGTT-TTAGTGCCTAATCACAAAATGAATGTAGATTATTACT-GAATCCATG
* * * * *
2013012 TTTGCCTCATTTGAGGCACGAACTTAAACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCCTACG
64 TTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCG
* * * * * * *
2013077 AAACTAAAG-AGTCAATATCATGTATCCTTATGAGAAGACTACGTTTATGGTGCTTAATCCTTAA
129 AAACCAAAGCA-TCAATTTCATCTATCCTAATGAGAAGACTATGTTTATGGTGCGTAA-CCTGAA
*
2013141 AAGAATGGGGATTAGTATGAGTATTCATGTTTGTTTTATTTAAGAGACAAACTTTGATTCTATCA
192 AAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
* * * * *
2013206 AAAATGGCTGCAAGAAAAGCTCTTCTTACGTCCCCAAAGCATCAATGTCATGTATCCTAATGAAA
257 AAAACGG-TGCAAGAAAACCTTTTCTTGCGACCCCAAAGCATCAATGTCATGTATCCTAATGAAA
* * * * *
2013271 GAAAAGTGTTTTTGGTTCCCAATCGTGAAAAGAATGGACACTATTAAGAGAATCAATGCATGCCT
321 GGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTAAGAGAATCAATGCTTGCCT
* * * * *
2013336 TATTTATGGGATGTACTACGATTTTGAGGAAAATAAGGCAAAGAAACGATTTTCATGCAAAAGAA
386 TATTTATGGGATGAACTTCGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAA
** * * *
2013401 AACCATTTATATCATTTCTCCA
451 AACCATCAATATCATTTATACT
* * * ** * *
2013423 AATGAGGAGATTGTGTTTATAGTGCCCAATTACAAAATGAATGTAGATCGTTACTAAAATCCAAG
1 AATGAGGAGAATGTGTTT-TAGTGCCTAATCACAAAATGAATGTAGATTATTACT-GAATCCATG
* * * * * *
2013488 TTTGTTTTATTTGAGGCATGAACTTAGA-GTTAGCAAAAATTGGTGGTAAGAAAGTCTTTCTTGC
64 TTTGTCTCATTTGAGGCACGAACTTAGACTTTA-CAAAAATTGGTGGGAAGAAAGCCTTTCTTGC
* ** * * * *
2013552 GAATCCAAAGCATCAATTTTGTCTGTCCTAATGAGAAGCCGATGTTTATGGTGC-TAAATCCAGA
128 GAAACCAAAGCATCAATTTCATCTATCCTAATGAGAAGACTATGTTTATGGTGCGT-AA-CCTGA
* * * **
2013616 AAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTAATTAGGAGGTAAACTTTGATTCTATC
191 AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
* * * * *
2013681 AAAAATGGTGGAGGGAAAACCATTTCTTGCGACACCC-AAGCATCAATGTCTTGTATCCTAATGA
256 AAAAACGGTGCA-AGAAAACCTTTTCTTGCGAC-CCCAAAGCATCAATGTCATGTATCCTAATGA
* * * *
2013745 AGGGAATGTGTTTTT-GTCCCCAATCTTGAAAA-AATGGAGATTATTAAAAGAATCAATGCTTGC
319 AAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTAAGAGAATCAATGCTTGC
*
2013808 CTTATTTATGGGATGAACTAT-GATTTTAAGGAAAATAGGGTAAAGAAAAGATTTTCATGCAAAA
384 CTTATTTATGGGATGAACT-TCGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAA
*
2013872 GAAAACCATCAATATCTTTTATACT
448 GAAAACCATCAATATCATTTATACT
* *
2013897 AATGAGGAGAATGTATTTTTAGTGCCTAATCACAAATTGAATGTAGATTATTACTGGAATCCATG
1 AATGAGGAGAATGT-GTTTTAGTGCCTAATCACAAAATGAATGTAGATTATTACT-GAATCCATG
* * * * * * *
2013962 TTTGTCTCACTAGAGGCACGAACTTAGACTTTACAAAAATAGGTGGGAGGAACG-CTTTTTGTGT
64 TTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCT-TGC
** *
2014026 GAAACCAAAGCATC-ATTTTGTCTATCCTAATGAGAAGACTATGTTTATGGTGCGTAACCCTAAA
128 GAAACCAAAGCATCAATTTCATCTATCCTAATGAGAAGACTATGTTTATGGTGCGTAA-CCTGAA
* *
2014090 AAGAATTGGGATTAGTATGAGTATTCATGTTTGTCTTAATTAAGAGACAAACTTTGATTCTATCA
192 AAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
* * * * * *
2014155 AAAACAGTGGAAGGAAAACCTTTTCTTACGACTCCAAAGCATCAATGTCATGTATCCTAACGAAT
257 AAAACGGTGCAA-GAAAACCTTTTCTTGCGACCCCAAAGCATCAATGTCATGTATCCTAATGAAA
* * *
2014220 GGAGTGTGTTTTTGGTTCCCAATCTTGAAAAGAACGGAGACTATCAAGAGAATCAATGCTTGCCT
321 GGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTAAGAGAATCAATGCTTGCCT
* *
2014285 TATTTATGGGATGAACTTCAATTTTAAGGAAAATAGGACAAAGAAAAGATTTTCATGCAAAAGAA
386 TATTTATGGGATGAACTTCGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAA
2014350 AACCATCAATATCATTTATACT
451 AACCATCAATATCATTTATACT
* * * *
2014372 AATAAGGAGAATGGGTTTTAGTGCCTAATCACAAAATGAATGTAGATTATTACTGCAATTCTTGT
1 AATGAGGAGAATGTGTTTTAGTGCCTAATCACAAAATGAATGTAGATTATTACTG-AATCCATGT
* * * * **
2014437 TTGTCTCACTTGAGTCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGACTTTCCTGTTA
65 TTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGA
* * * *
2014502 AACCAAAGTATCAATTTCATCTATCCTAATGAGAAGAGT-TGTTTATAGTGCGTAACCTTTAAAA
130 AACCAAAGCATCAATTTCATCTATCCTAATGAGAAGACTATGTTTATGGTGCGTAACC-TGAAAA
* * * * *
2014566 GAATGGGGATCAGTATGAATATTCATGTATGTCTTATTTAAGAGACAAACTTTGATCCTGTCAAA
194 GAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAA
* * * *
2014631 AACGGTTGCAAGAAAAGCTTTTCTTGCAACCCCAAAGCGTCAATGTCATGTATCATAATGAAAGG
259 AACGG-TGCAAGAAAACCTTTTCTTGCGACCCCAAAGCATCAATGTCATGTATCCTAATGAAAGG
*
2014696 AATGTGTTTTTGGATCCC
323 AATGTGTTTTTGGTTCCC
2014714 TATTCTGAAA
Statistics
Matches: 1506, Mismatches: 219, Indels: 70
0.84 0.12 0.04
Matches are distributed among these distances:
459 2 0.00
460 173 0.11
461 143 0.09
464 1 0.00
465 1 0.00
466 2 0.00
469 1 0.00
470 1 0.00
472 2 0.00
473 174 0.12
474 479 0.32
475 182 0.12
476 341 0.23
477 4 0.00
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.32
Consensus pattern (472 bp):
AATGAGGAGAATGTGTTTTAGTGCCTAATCACAAAATGAATGTAGATTATTACTGAATCCATGTT
TGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAA
ACCAAAGCATCAATTTCATCTATCCTAATGAGAAGACTATGTTTATGGTGCGTAACCTGAAAAGA
ATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA
CGGTGCAAGAAAACCTTTTCTTGCGACCCCAAAGCATCAATGTCATGTATCCTAATGAAAGGAAT
GTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTAAGAGAATCAATGCTTGCCTTATTT
ATGGGATGAACTTCGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCA
TCAATATCATTTATACT
Found at i:2015102 original size:426 final size:424
Alignment explanation
Indices: 2014305--2015149 Score: 1022
Period size: 425 Copynumber: 2.0 Consensus size: 424
2014295 ATGAACTTCA
2014305 ATTTTAAGGAAAATAGGACAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATA
1 ATTTTAAGGAAAATAGGACAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATA
* * * * * * *
2014370 CTAATAAGGAGAATGGGTTTTAGTGCCTAATCACAAAATGAATGTAGATTATTACTGCAATTCTT
66 CTAATAAGGAGAATGGGTTTCAGTGCCTAATAACAAAATGAACGAAGATCATTACTGCAATCCAT
* * * * * **
2014435 GTTTGTCTCACTTGAGTCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGACTTTCCTGT
131 GCTTGTCTCACTTAAGGCACAAACTTAAACTTTACAAAAATTGGTGGGAAGAAAGACTTTCCTAA
* ** * * * *
2014500 TAAACCAAAGTATCAATTTCATCTATCCTAATGAGAAGAGTTGTTTATAGTGCGTAACCTTTAAA
196 GAAACCAAAGTATCAACATCATCTATCCTAATAAGAAGACTAGTTTATAGTGCGTAACCTTAAAA
* * * * * *
2014565 AGAATGGGGATCAGTATGAATATTCATGTATGTCTTATTTAAGAGACAAACTTTGATCCTGTCAA
261 AAAATGGGGATCAGCATGAATATTCATGTATGCCTTAATCAAGAGACAAACTTTGATCCTATCAA
* * *
2014630 AAACGGTTGCAAGAAAAGCTTTTCTTGCAACCCCAAAGCGTCAATGTCATGTATCATAATGAAAG
326 AAACGGTTGCAAGAAAACCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCATAATGAAAG
2014695 GAATGTGTTTTTGGATCCCTAT-TCTGAAAACATCG
391 GAATGTGTTTTT-GATCCCTATCT-TGAAAACATCG
* *
2014730 ATTTTAAGGAAAATAGGGCAATG-AAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTAT-
1 ATTTTAAGGAAAATAGGACAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATA
* * * * * *
2014793 CTTAGTGAGGATAATGTGTTTACAGTGCCTAATAACAAAATGAACGAAGATCCTTATTAG-AATC
66 C-TAATAAGGAGAATGGGTTT-CAGTGCCTAATAACAAAATGAACGAAGATCATTACT-GCAATC
* * *
2014857 CATGCTTGTCTCATTTAAGGCACAAAC-TAAATTTTTACAAAAATTGGTGGGAAGAAAGCCTTTC
128 CATGCTTGTCTCACTTAAGGCACAAACTTAAA-CTTTACAAAAATTGGTGGGAAGAAAGACTTTC
* * * * * *
2014921 TTAAGAAACTAAAG-AGTCAACATCATGTTTCCTTATAAGAAGACTAAGTTTATGGTGCGTAATC
192 CTAAGAAACCAAAGTA-TCAACATCATCTATCCTAATAAGAAGACT-AGTTTATAGTGCGTAA-C
* * * * *
2014985 C-TAAAAAAAATGGGGATTAGCATGAGTATTCATGTTTGCCTTAATCAAGAGGCAAACTTTGATT
254 CTTAAAAAAAATGGGGATCAGCATGAATATTCATGTATGCCTTAATCAAGAGACAAACTTTGATC
* ** *
2015049 CTATCAAAAACGG-TGGAAGGAAAACCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCT
319 CTATCAAAAACGGTTGCAA-GAAAACCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCAT
* *
2015113 AATGAAGGGAATGTGTTTTTGTTCCCTATCTTGAAAA
383 AATGAAAGGAATGTGTTTTTGATCCCTATCTTGAAAA
2015150 AATGGAGATT
Statistics
Matches: 353, Mismatches: 58, Indels: 18
0.82 0.14 0.04
Matches are distributed among these distances:
423 1 0.00
424 59 0.17
425 153 0.43
426 138 0.39
427 2 0.01
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.31
Consensus pattern (424 bp):
ATTTTAAGGAAAATAGGACAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATA
CTAATAAGGAGAATGGGTTTCAGTGCCTAATAACAAAATGAACGAAGATCATTACTGCAATCCAT
GCTTGTCTCACTTAAGGCACAAACTTAAACTTTACAAAAATTGGTGGGAAGAAAGACTTTCCTAA
GAAACCAAAGTATCAACATCATCTATCCTAATAAGAAGACTAGTTTATAGTGCGTAACCTTAAAA
AAAATGGGGATCAGCATGAATATTCATGTATGCCTTAATCAAGAGACAAACTTTGATCCTATCAA
AAACGGTTGCAAGAAAACCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCATAATGAAAG
GAATGTGTTTTTGATCCCTATCTTGAAAACATCG
Found at i:2015604 original size:159 final size:156
Alignment explanation
Indices: 2014968--2015659 Score: 410
Period size: 157 Copynumber: 4.4 Consensus size: 156
2014958 AGAAGACTAA
* * * * **
2014968 GTTTATGGTGCGTAATCCTAAAAAAAATGGGGATTAGCATGAGTATTCATGTTTGCCTTAATC-A
1 GTTTATGGTGC-CAATCCTGAAAAGAATGGAGATTATTATGAG-ATTCATGTTTGCCTT-ATCTA
* ** * *
2015032 AGAGGCAAACTTTGATTCTATCAAAAACGGT-GGAAGGAAAACCTTTTCTTGTGACACCAAAGCA
63 AGAGACAAACTTTGATTCTATCAAAAATAGTGGGAA-GAAAAGCTTTTCTTGTAACACCAAAGCA
*
2015096 TCAATGTCATGTATCCTAATGAAGGGAATGT
127 TCAATGTCATGTATCCTAATG-AGGAAATGT
* * * * * * * * * *
2015127 GTTTTTGTTCCCTATCTTGAAAA-AATGGAGATTATTAAGAGAATCAATGCTTGCCTTATTTATG
1 GTTTATGGTGCCAATCCTGAAAAGAATGGAGATTATTATGAGATTC-ATGTTTGCCTTATCTAAG
* ** ** * *** * * * * * ** *
2015191 GGATGAACTACGATTTTAAGGAAAATAG-GGTAAAGAAAAGATTTTCATGCAAAAGAAAACCATC
65 AGACAAACTTTGATTCTATCAAAAATAGTGG-GAAGAAAAGCTTTTCTTGTAACACCAAAGCATC
* * * * *
2015255 TATATCATTTCTACTAATGAGGAGAATGT
129 AATGTCATGTATCCTAATGAGGA-AATGT
* * * * * * *
2015284 GTTTATAGTGCCTAATCAC-CAAATGAATGAAGATTATTACTTGA-ATCTGA-GTTTGTCTCAT-
1 GTTTATGGTGCC-AATC-CTGAAAAGAATGGAGATTATTA--TGAGAT-TCATGTTTGCCTTATC
* * * *
2015345 T-TGAGACATGAACTTAGACTT-TA-CAAAAATTGGTGGGAAG-AAAGCCTTTCTTGTGAA-ACC
61 TAAGAGACA--AACTTTGA-TTCTATCAAAAA-TAGTGGGAAGAAAAGCTTTTCTTGT-AACACC
* * *
2015405 AAAGCATCAA-GTTAGTCTATCCTAATGA-GAAGACTAT
121 AAAGCATCAATGTCA-TGTATCCTAATGAGGAA-A-TGT
* * *
2015442 GTTTATGGTGCCAATTCCTGAAAAGAATGGGGATTAATATGAGTATTCATGTTTGTCTTATCTAA
1 GTTTATGGTGCCAA-TCCTGAAAAGAATGGAGATTATTATGAG-ATTCATGTTTGCCTTATCTAA
* *
2015507 GAGACAAACTTTGATTCTATCAAAAATAGTTGCAAGAAAAGCTTTTCTTGTAACACCAAAGCATC
64 GAGACAAACTTTGATTCTATCAAAAATAGTGGGAAGAAAAGCTTTTCTTGTAACACCAAAGCATC
2015572 AATGTCATGTATCCTAATGAAGGAAATGT
129 AATGTCATGTATCCTAATG-AGGAAATGT
* * * * * *
2015601 GTTT-TTGTTCCTAATCTTGAAAA-AATGGAGATTATTAAGAGAATCAATGCTTGCCTTAT
1 GTTTATGGTGCC-AATCCTGAAAAGAATGGAGATTATTATGAGATTC-ATGTTTGCCTTAT
2015660 TTATGGGATG
Statistics
Matches: 390, Mismatches: 107, Indels: 74
0.68 0.19 0.13
Matches are distributed among these distances:
156 15 0.04
157 133 0.34
158 123 0.32
159 96 0.25
160 17 0.04
161 6 0.02
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (156 bp):
GTTTATGGTGCCAATCCTGAAAAGAATGGAGATTATTATGAGATTCATGTTTGCCTTATCTAAGA
GACAAACTTTGATTCTATCAAAAATAGTGGGAAGAAAAGCTTTTCTTGTAACACCAAAGCATCAA
TGTCATGTATCCTAATGAGGAAATGT
Found at i:2015640 original size:474 final size:473
Alignment explanation
Indices: 2014728--2015773 Score: 1486
Period size: 474 Copynumber: 2.2 Consensus size: 473
2014718 CTGAAAACAT
* *
2014728 CGATTTTAAGGAAAATAGGGCAATG-AAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTA
1 CGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTA
* * * * *
2014792 TCTTAGTGAGGATAATGTGTTTACAGTGCCTAATAACAAAATGAACGAAGATCCTTATTAGAATC
66 TC-TAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAACGAAGATCATTATTAGAATC
* *
2014857 CATGCTTGTCTCATTTAAGGCACAAACTAAATTTTTACAAAAATTGGTGGGAAGAAAGCCTTTCT
130 CATGCTTGTCTCATTTAAGACACAAACTAAATCTTTACAAAAATTGGTGGGAAGAAAGCCTTTCT
* * *
2014922 TAAGAAACTAAAGAGTCAACATCATGTTTCCTTATAAGAAGACTAAGTTTATGGTGCGTAATCCT
195 TAAGAAACCAAAGAGTCAACATCATGTTTCCTAATAAGAAGACTAAGTTTATGGTGCGCAATCCT
* *
2014987 AAAAAAAATGGGGATTAGCATGAGTATTCATGTTTGCCTTAATCAAGAGGCAAACTTTGATTCTA
260 AAAAAAAATGGGGATTAACATGAGTATTCATGTTTGCCTTAATCAAGAGACAAACTTTGATTCTA
* * *
2015052 TCAAAAACGGTGGAAGGAAAACCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATG
325 TCAAAAAAGGTGCAAGGAAAACCTTTTCTTGTAACACCAAAGCATCAATGTCATGTATCCTAATG
*
2015117 AAGGGAATGTGTTTTTGTTCCCTATCTTGAAAAAATGGAGATTATTAAGAGAATCAATGCTTGCC
390 AAGGAAATGTGTTTTTGTTCCCTATCTTGAAAAAATGGAGATTATTAAGAGAATCAATGCTTGCC
2015182 TTATTTATGGGATGAACTA
455 TTATTTATGGGATGAACTA
* *
2015201 CGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTTCATGCAAAAGAAAACCATCTATATCATTTC
1 CGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTA
* * *
2015266 TACTAATGAGGAGAATGTGTTTATAGTGCCTAATCACCAAATGAATGAAGATTATTACTT-GAAT
66 T-CTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAACGAAGATCATTA-TTAGAAT
* * * ** *
2015330 CTGA-GTTTGTCTCATTTGAGACATGAACTTAGA-CTTTACAAAAATTGGTGGGAAGAAAGCCTT
129 C-CATGCTTGTCTCATTTAAGACACAAAC-TAAATCTTTACAAAAATTGGTGGGAAGAAAGCCTT
** * * * *
2015393 TCTTGTGAAACCAAAGCA-TCAA-GTTA-GTCTATCCTAATGAGAAGACTATGTTTATGGTGC-C
192 TCTTAAGAAACCAAAG-AGTCAACATCATGT-T-TCCTAATAAGAAGACTAAGTTTATGGTGCGC
* * * *
2015454 AATTCCTGAAAAGAATGGGGATTAATATGAGTATTCATGTTTGTCTT-ATCTAAGAGACAAACTT
254 AA-TCCTAAAAAAAATGGGGATTAACATGAGTATTCATGTTTGCCTTAATC-AAGAGACAAACTT
* *
2015518 TGATTCTATCAAAAATAGTTGCAA-GAAAAGCTTTTCTTGTAACACCAAAGCATCAATGTCATGT
317 TGATTCTATCAAAAA-AGGTGCAAGGAAAACCTTTTCTTGTAACACCAAAGCATCAATGTCATGT
2015582 ATCCTAATGAAGGAAATGTGTTTTTGTT-CCTAATCTTGAAAAAATGGAGATTATTAAGAGAATC
381 ATCCTAATGAAGGAAATGTGTTTTTGTTCCCT-ATCTTGAAAAAATGGAGATTATTAAGAGAATC
2015646 AATGCTTGCCTTATTTATGGGATGAACTA
445 AATGCTTGCCTTATTTATGGGATGAACTA
* *
2015675 CAATTTTAAGAAAAATAGGGTAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTA
1 CGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTA
* *
2015740 TCCTAATGAGGAGAATGTG-ATATGGTGCCTAATC
66 T-CTAATGAGGAGAATGTGTTTATAGTGCCTAATC
2015774 CCACTTGAGG
Statistics
Matches: 513, Mismatches: 48, Indels: 24
0.88 0.08 0.04
Matches are distributed among these distances:
472 2 0.00
473 47 0.09
474 451 0.88
475 13 0.03
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (473 bp):
CGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTA
TCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAACGAAGATCATTATTAGAATCC
ATGCTTGTCTCATTTAAGACACAAACTAAATCTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTT
AAGAAACCAAAGAGTCAACATCATGTTTCCTAATAAGAAGACTAAGTTTATGGTGCGCAATCCTA
AAAAAAATGGGGATTAACATGAGTATTCATGTTTGCCTTAATCAAGAGACAAACTTTGATTCTAT
CAAAAAAGGTGCAAGGAAAACCTTTTCTTGTAACACCAAAGCATCAATGTCATGTATCCTAATGA
AGGAAATGTGTTTTTGTTCCCTATCTTGAAAAAATGGAGATTATTAAGAGAATCAATGCTTGCCT
TATTTATGGGATGAACTA
Found at i:2015729 original size:157 final size:157
Alignment explanation
Indices: 2015094--2015773 Score: 461
Period size: 157 Copynumber: 4.3 Consensus size: 157
2015084 GACACCAAAG
* *
2015094 CATCAATGTCATGTATCCTAATGAAGGGAATGTGTTT-TTGTTCCCT-ATCTTGAAAAAATGGAG
1 CATCAATGTCATGTATCCTAATG-AGGAAATGTGTTTATTG-TGCCTAATCTTGAAAAAATGGAG
* **
2015157 ATTATTAAGAGAATCAATGCTTGCCTTATTTATGGGATGAACTACGATTTTAAGGAAAATAGGGT
64 ATTATTAAGAGAATCAATGCTTGCCTTATTTATGAGATGAACTACGATTTTAACAAAAATAGGGT
*
2015222 AAAGAAAAGATTTTCATGCAAAAGAAAAC
129 AAAGAAAAGATTTTCATGCAAAACAAAAC
* * * * * * *** * *
2015251 CATCTATATCATTTCTACTAATGAGGAGAATGTGTTTATAGTGCCTAATCACCAAATGAATGAAG
1 CATCAATGTCATGTATCCTAATGAGGA-AATGTGTTTATTGTGCCTAATCTTGAAA-AAATGGAG
*** * * * * * * *
2015316 ATTATTACTTGAATCTGA-GTTTGTCTCATTTGA-GACATGAACTTA-GACTTT-ACAAAAATTG
64 ATTATTAAGAGAATC-AATGCTTGCCTTATTT-ATGAGATGAAC-TACGATTTTAACAAAAATAG
** ** * ** * *
2015377 GTGGGAAG-AAAGCCTTTCTTGTGAAACCAAAG
126 G-GTAAAGAAAAGATTTTCATGCAAAACAAAAC
* * * * *
2015409 CATCAA-GTTAGTCTATCCTAATGA-GAAGACTATGTTTATGGTGCC-AATTCCTGAAAAGAATG
1 CATCAATGTCA-TGTATCCTAATGAGGAA-A-TGTGTTTATTGTGCCTAA-TCTTGAAAA-AATG
* * * * * * * * ** ** * *
2015471 GGGATTAATATGAGTATTC-ATGTTTGTCTTATCTAAGAGACAAACTTTGATTCTATCAAAAATA
61 GAGATTATTAAGAG-AATCAATGCTTGCCTTATTTATGAGATGAACTACGATTTTAACAAAAATA
* * * * * * * *
2015535 -GTTGCAAGAAAAGCTTTTCTTGTAACACCAAAG
125 GGGT-AAAGAAAAGATTTTCATGCAAAACAAAAC
*
2015568 CATCAATGTCATGTATCCTAATGAAGGAAATGTGTTT-TTGTTCCTAATCTTGAAAAAATGGAGA
1 CATCAATGTCATGTATCCTAATG-AGGAAATGTGTTTATTGTGCCTAATCTTGAAAAAATGGAGA
* * *
2015632 TTATTAAGAGAATCAATGCTTGCCTTATTTATGGGATGAACTACAATTTTAAGAAAAATAGGGTA
65 TTATTAAGAGAATCAATGCTTGCCTTATTTATGAGATGAACTACGATTTTAACAAAAATAGGGTA
*
2015697 AAGAAAAGATTTTCATGCAAAAGAAAAC
130 AAGAAAAGATTTTCATGCAAAACAAAAC
* * * *
2015725 CATCAATATCATTTATCCTAATGAGGAGAATGTG-ATATGGTGCCTAATC
1 CATCAATGTCATGTATCCTAATGAGGA-AATGTGTTTATTGTGCCTAATC
2015774 CCACTTGAGG
Statistics
Matches: 387, Mismatches: 108, Indels: 56
0.70 0.20 0.10
Matches are distributed among these distances:
156 12 0.03
157 146 0.38
158 117 0.30
159 100 0.26
160 9 0.02
161 3 0.01
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.32
Consensus pattern (157 bp):
CATCAATGTCATGTATCCTAATGAGGAAATGTGTTTATTGTGCCTAATCTTGAAAAAATGGAGAT
TATTAAGAGAATCAATGCTTGCCTTATTTATGAGATGAACTACGATTTTAACAAAAATAGGGTAA
AGAAAAGATTTTCATGCAAAACAAAAC
Found at i:2016242 original size:896 final size:888
Alignment explanation
Indices: 2013969--2016670 Score: 3075
Period size: 896 Copynumber: 3.0 Consensus size: 888
2013959 ATGTTTGTCT
* * * * * *
2013969 CACTAGAGGCACGAACTTAGACTTTACAAAAATAGGTGGGAGGAACGCTTTTTGTGTGAAACCAA
1 CACTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCTTTCT-TGAGAAACCAA
* ** *
2014034 AGCATC-ATTTTGTCTATCCTAATGAGAAGACTATGTTTATGGTGCGTAACCCTAAAAAGAATTG
65 AGCATCAATATCATCTATCCTAATGAGAAGACTATGTTTATGGTGCGTAATCCT-AAAAG-A---
*
2014098 GGATTAGTATGAGTATTCATGTTTGTCTTAATTAAGAGACAAACTTTGATTCTATCAAAAACAGT
125 --A--AGTATGAGTATTCATGTTTGCCTTAATTAAGAGACAAACTTTGATTCTATCAAAAACAGT
*
2014163 GGAAGGAAAACCTTTTCTTACGACT-CCAAAGCATCAATGTCATGTATCCTAACGAATGGAGTGT
186 GGAAGGAAAACCTTTTCTTACGA-TACCAAAGCATCAATGTCATGTATCCTAACGAA-GGAATGT
*
2014227 GTTTTTGGTTCCCAATCTTGAAAAGAACGGAGACTATCAAGAGAATCAATGCTTGCCTTATTTAT
249 GTTTTTGGTTCCCAATCTTGAAAAGAAGGGAG-C--T-AAGAGAATCAATGCTTGCCTTATTTAT
* *
2014292 GGGATGAACTTCAATTTTAAGGAAAATAGGACAAAGAAAAGATTTTCATGCAAAAGAAAACCATC
310 GGGATGAACTTCGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATC
* * * *
2014357 AATATCATTTATACTAATAAGGAGAATGGGTTT-TAGTGCCTAATCACAAAATGAATGTAGATTA
375 AATATCATTTATACTAATGAGGAGAATGTGTTTATAGTGCCTAATCACCAAATGAATGAAGATTA
* * * *
2014421 TTAC-TGCAATTCTTGTTTGTCTCACTTGAGTCACGAACTTAGACTTTACAAAAATTGGTGGGAA
440 TTACTTG-AATCCATGTTTGTCTCATTTGAGACACGAACTTAGACTTTACAAAAATTGGTGGGAA
* * * * *
2014485 GAAAGACTTTCCTGTTAAACCAAAGTATCAATTTCA-TCTATCCTAATGAGAAGAGTTGTTTATA
504 GAAAGCCTTTCTTG-TAAACCAAAGCATCAATTT-AGTCTATCCTAATGAGAAGACTTGTTTATG
* * * *
2014549 GTGCGTAA-CCTTTAAAAGAATGGGGATCAGTATGAATATTCATGTATGTCTTATTTAAGAGACA
567 GTGC-CAATCC-TTAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTA-TTAAGAGACA
* * * *
2014613 AACTTTGATCCTGTCAAAAACGGTTGCAAGAAAAGCTTTTCTTGCAACCCCAAAGCGTCAATGTC
629 AACTTTGATTCTATCAAAAA-TGTTGCAAGAAAAGCTTTTCTTGCAACACCAAAGCGTCAATGTC
* * * * *
2014678 ATGTATCATAATGAAAGG-AATGTGTTTTTGGATCCCTATTC-TGAAAACAT--CGATT-TTAAG
693 ATGTATCCTAATG-AAGGAAATGTGTTTTT-G-TTCCTAATCTTGAAAAAATGGAGATTATTAA-
* *** * * * * * * * *** ***
2014738 GAAAATAGGGCAATGAAAG-ATT-TTCATGCAAAAGAAAACCATCAATATCATTTATCTTA--GT
754 GAGAAT----CAATGCTTGCCTTATTTATG-AGATG--AA-CAACAATTTTAAGAAAAATAGGGT
* * * ** * * * ** **
2014799 GAGGATAATG-TGTTTACAGTGC-CTA-ATAA-CA-AAATGAACGA-AGATCCT--T-ATTAGAA
811 AAAGA-AAAGAT-TTT-CA-TGCAAAAGAAAACCATCAAT-ATC-ATTTATCCTAATGAGGAGAA
** ** *
2014855 --T-CCA--TG-CTTGTCT
870 TGTGATATGTGCCTAATCC
* * * * * * *
2014868 CATTTAAGGCACAAAC-TAAATTTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTAAGAAACTA
1 CACTTGAGGCACGAACTTAGA-CTTTACAAAAATTGGTGGGAAGAAAG-CTTTCTTGAGAAACCA
* * * * * * *
2014932 AAG-AGTCAACATCATGTTTCCTTATAAGAAGACTAAGTTTATGGTGCGTAATCCTAAAAAAAAT
64 AAGCA-TCAATATCATCTATCCTAATGAGAAGACTATGTTTATGGTGCGTAATCCTAAAAGAAA-
* * *
2014996 GGGGATTAGCATGAGTATTCATGTTTGCCTTAATCAAGAGGCAAACTTTGATTCTATCAAAAACG
127 ---G--T---ATGAGTATTCATGTTTGCCTTAATTAAGAGACAAACTTTGATTCTATCAAAAACA
** * *
2015061 GTGGAAGGAAAACCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATG
184 GTGGAAGGAAAACCTTTTCTTACGATACCAAAGCATCAATGTCATGTATCCTAACGAA-GGAATG
* **
2015126 TGTTTTT-GTTCCCTATCTTGAAAA-AATGGAGATTATTAAGAGAATCAATGCTTGCCTTATTTA
248 TGTTTTTGGTTCCCAATCTTGAAAAGAA-GG-GA--GCTAAGAGAATCAATGCTTGCCTTATTTA
* *
2015189 TGGGATGAACTACGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTTCATGCAAAAGAAAACCAT
309 TGGGATGAACTTCGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCAT
* *
2015254 CTATATCATTTCTACTAATGAGGAGAATGTGTTTATAGTGCCTAATCACCAAATGAATGAAGATT
374 CAATATCATTTATACTAATGAGGAGAATGTGTTTATAGTGCCTAATCACCAAATGAATGAAGATT
* *
2015319 ATTACTTGAATCTGA-GTTTGTCTCATTTGAGACATGAACTTAGACTTTACAAAAATTGGTGGGA
439 ATTACTTGAATC-CATGTTTGTCTCATTTGAGACACGAACTTAGACTTTACAAAAATTGGTGGGA
*
2015383 AGAAAGCCTTTCTTGTGAAACCAAAGCATCAAGTTAGTCTATCCTAATGAGAAGACTATGTTTAT
503 AGAAAGCCTTTCTTGT-AAACCAAAGCATCAATTTAGTCTATCCTAATGAGAAGACT-TGTTTAT
* *
2015448 GGTGCCAATTCCTGAAAAGAATGGGGATTAATATGAGTATTCATGTTTGTCTTATCTAAGAGACA
566 GGTGCCAA-TCCTTAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTAT-TAAGAGACA
* *
2015513 AACTTTGATTCTATCAAAAATAGTTGCAAGAAAAGCTTTTCTTGTAACACCAAAGCATCAATGTC
629 AACTTTGATTCTATCAAAAAT-GTTGCAAGAAAAGCTTTTCTTGCAACACCAAAGCGTCAATGTC
2015578 ATGTATCCTAATGAAGGAAATGTGTTTTTGTTCCTAATCTTGAAAAAATGGAGATTATTAAGAGA
693 ATGTATCCTAATGAAGGAAATGTGTTTTTGTTCCTAATCTTGAAAAAATGGAGATTATTAAGAGA
* *
2015643 ATCAATGCTTGCCTTATTTATGGGATGAACTACAATTTTAAGAAAAATAGGGTAAAGAAAAGATT
758 ATCAATGCTTGCCTTATTTATGAGATGAACAACAATTTTAAGAAAAATAGGGTAAAGAAAAGATT
2015708 TTCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGATATGGTGCCTAAT
823 TTCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGATAT-GTGCCTAAT
2015773 CC
887 CC
*
2015775 CACTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCATTTCTTGCGAAACCAA
1 CACTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGC-TTTCTTGAGAAACCAA
* * * * ** *
2015840 AGCATCAATGTCAACTATCCTAATGGGAAGACTATGTTTGTGGTGCCAAATCTTGAAAAGAAAGT
65 AGCATCAATATCATCTATCCTAATGAGAAGACTATGTTTATGGTGCGTAATCCT-AAAAGAAAGT
* * * *
2015905 ATGACTATTCATGTTTGCCTTATTTAAGAGACAAACTTTGATTCAATCAAAAACAATGGAAGGAA
129 ATGAGTATTCATGTTTGCCTTAATTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAGGAA
* ** *
2015970 AACCTTTTCTTACGATACCAAGGCGGCAATGTCATGTATCCTAACGAAGGAAAAGTGTTTTTGGT
194 AACCTTTTCTTACGATACCAAAGCATCAATGTCATGTATCCTAACGAAGG-AATGTGTTTTTGGT
* * * *
2016035 TCCCAATCCTGAAAAGAAGGGAGCTAAGAGAATC-ATGCTTGCCGTATTTAAGTGATGAACTTCG
258 TCCCAATCTTGAAAAGAAGGGAGCTAAGAGAATCAATGCTTGCCTTATTTATGGGATGAACTTCG
*
2016099 ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATC
323 ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATA
*
2016164 CTAATGAGGAGAATGTGTTTATTGTGCCTAATCACCAAATGAATGAAGATTATTACTTGAATCCA
388 CTAATGAGGAGAATGTGTTTATAGTGCCTAATCACCAAATGAATGAAGATTATTACTTGAATCCA
* * * *
2016229 TGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTAGTGGGAAAAAAGCCTTTCTAG
453 TGTTTGTCTCATTTGAGACACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTG
*
2016294 CTAAACCAAAGCATCAATTTAGTCAATCCTAATGAGAAGACTTTGTTTATGGTGCCAAATCCTTA
518 -TAAACCAAAGCATCAATTTAGTCTATCCTAATGAGAAGAC-TTGTTTATGGTGCC-AATCCTTA
* *
2016359 AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCATAATTGAGAGACAAACTTTGATTCTATC
580 AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTC-TTATTAAGAGACAAACTTTGATTCTATC
* * * * * *
2016424 AAAAATGGTGGAAGGAAAACCTTTTCTTGCGACACCAAAGTGTCAATGTCATGTATCCTAACGAA
644 AAAAATGTTGCAA-GAAAAGCTTTTCTTGCAACACCAAAGCGTCAATGTCATGTATCCTAATGAA
* * *
2016489 -GAGAATATGTTTTTGTTCCCAATCTTAAAAAAATGGAGATTATTAAGAGAATCAATGCTTGCCT
708 GGA-AATGTGTTTTTGTTCCTAATCTTGAAAAAATGGAGATTATTAAGAGAATCAATGCTTGCCT
*
2016553 TATTTATGAGATGAACAACAATTTTAAGGAAAATAGGGTAAAGAAAAGATTTTCATGCAAAAGAA
772 TATTTATGAGATGAACAACAATTTTAAGAAAAATAGGGTAAAGAAAAGATTTTCATGCAAAAGAA
* * *
2016618 AACCATCAATGTCATTTACCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC
837 AACCATCAATATCATTTATCCTAATGAGGAGAATGTG-ATAT-GTGCCTAATC
2016671 ACCAAATGAA
Statistics
Matches: 1542, Mismatches: 193, Indels: 138
0.82 0.10 0.07
Matches are distributed among these distances:
891 1 0.00
893 1 0.00
894 3 0.00
895 22 0.01
896 539 0.35
897 52 0.03
898 142 0.09
899 331 0.21
900 322 0.21
901 13 0.01
902 6 0.00
903 1 0.00
904 1 0.00
906 3 0.00
907 94 0.06
908 11 0.01
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (888 bp):
CACTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCTTTCTTGAGAAACCAAA
GCATCAATATCATCTATCCTAATGAGAAGACTATGTTTATGGTGCGTAATCCTAAAAGAAAGTAT
GAGTATTCATGTTTGCCTTAATTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAGGAAAA
CCTTTTCTTACGATACCAAAGCATCAATGTCATGTATCCTAACGAAGGAATGTGTTTTTGGTTCC
CAATCTTGAAAAGAAGGGAGCTAAGAGAATCAATGCTTGCCTTATTTATGGGATGAACTTCGATT
TTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATACTA
ATGAGGAGAATGTGTTTATAGTGCCTAATCACCAAATGAATGAAGATTATTACTTGAATCCATGT
TTGTCTCATTTGAGACACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGTAA
ACCAAAGCATCAATTTAGTCTATCCTAATGAGAAGACTTGTTTATGGTGCCAATCCTTAAAAGAA
TGGGGATTAGTATGAGTATTCATGTTTGTCTTATTAAGAGACAAACTTTGATTCTATCAAAAATG
TTGCAAGAAAAGCTTTTCTTGCAACACCAAAGCGTCAATGTCATGTATCCTAATGAAGGAAATGT
GTTTTTGTTCCTAATCTTGAAAAAATGGAGATTATTAAGAGAATCAATGCTTGCCTTATTTATGA
GATGAACAACAATTTTAAGAAAAATAGGGTAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAA
TATCATTTATCCTAATGAGGAGAATGTGATATGTGCCTAATCC
Found at i:2016655 original size:474 final size:472
Alignment explanation
Indices: 2015778--2017101 Score: 1728
Period size: 474 Copynumber: 2.8 Consensus size: 472
2015768 CTAATCCCAC
*
2015778 TTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCATTTCTTGCGAAACCAAAGC
1 TTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGC
* * * *
2015843 ATCAATGTCA-ACTATCCTAATGGGAAGACTATGTTTGTGGTGCCAAAT-CTTGAAAAG-A----
66 ATCAAT-TTAGTCTATCCTAATGAGAAGACTATGTTTATGGTGCCAAATCCTT-AAAAGAATGGG
* * *
2015901 -A--AGTATGACTATTCATGTTTGCCTTATTTAAGAGACAAACTTTGATTCAATCAAAAACA-AT
129 GATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA-AGAT
* * * * * *
2015962 GGAAGGAAAACCTTTTCTTACGATACCAAGGCGGCAATGTCATGTATCCTAACGAAG-GAAAAGT
193 GGAAGGAAAACCTTTTCTTGCGACACCAAAGTGTCAATGTCATGTATCCTAACGAAGAGAATA-T
** *
2016026 GTTTTTGGTTCCCAATCCTGAAAAGAA-GG-GA-GCTAAGAGAATCATGCTTGCCGTATTTAAGT
257 GTTTTT-GTTCCCAAT-CTGAAAAGAATGGAGATATTAAGAGAATCATGCTTGCCGTATTTAAGA
** *
2016088 GATGAACTTCGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAA
320 GATGAACAACAATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAA
* *
2016153 TATCATTTATCCTAATGAGGAGAATGTGTTTATTGTGCCTAATCACCAAATGAATGAAGATTATT
385 TATCATTTACCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACCAAATGAATGAAGATTATT
2016218 ACTTGAATCCATGTTTGTCTCAT
450 ACTTGAATCCATGTTTGTCTCAT
* * * *
2016241 TTGAGGCACGAACTTAGACTTTACAAAAATTAGTGGGAAAAAAGCCTTTCTAGCTAAACCAAAGC
1 TTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGC
* *
2016306 ATCAATTTAGTCAATCCTAATGAGAAGACTTTGTTTATGGTGCCAAATCCTTAAAAGAATGGGGA
66 ATCAATTTAGTCTATCCTAATGAGAAGACTATGTTTATGGTGCCAAATCCTTAAAAGAATGGGGA
* * * * *
2016371 TTAGTATGAGTATTCATGTTTGTCATAATTGAGAGACAAACTTTGATTCTATCAAAAATGGTGGA
131 TTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAAGATGGA
2016436 AGGAAAACCTTTTCTTGCGACACCAAAGTGTCAATGTCATGTATCCTAACGAAGAGAATATGTTT
196 AGGAAAACCTTTTCTTGCGACACCAAAGTGTCAATGTCATGTATCCTAACGAAGAGAATATGTTT
* * * *
2016501 TTGTTCCCAATCTTAAAAAAATGGAGATTATTAAGAGAATCAATGCTTGCCTTATTTATGAGATG
261 TTGTTCCCAATCTGAAAAGAATGGAGA-TATTAAGAGAATC-ATGCTTGCCGTATTTAAGAGATG
* *
2016566 AACAACAATTTTAAGGAAAATAGGGTAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATGTC
324 AACAACAATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATC
2016631 ATTTACCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACCAAATGAATGAAGATTATTACTT
389 ATTTACCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACCAAATGAATGAAGATTATTACTT
*
2016696 GAATCTATGTTTGTCTCAT
454 GAATCCATGTTTGTCTCAT
2016715 TTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGC
1 TTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGC
* *
2016780 ACCAATTTAGTCTATTCTAATGAGAAGACTATGTTTATGGTGCCAAATCCTTAAAAGAATGGGGA
66 ATCAATTTAGTCTATCCTAATGAGAAGACTATGTTTATGGTGCCAAATCCTTAAAAGAATGGGGA
* * * *
2016845 TTAGTATGAGTATTCACGTTTGTCTTATTTAAGAGACAAACTTTAATTCTATCAAAAACAGTTGC
131 TTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA-AGATGG
* * * * ** * * *
2016910 AA-GAAAAGCTTTTCGTGCGACACCATAGTATTGATGTCATGCATCCTAATGAA-AGGAATGTGT
195 AAGGAAAACCTTTTCTTGCGACACCAAAGTGTCAATGTCATGTATCCTAACGAAGA-GAATATGT
* ** * *
2016973 TTATGGTTCCCAATCATGAAAAGAATGGAGACTATTTTGAG---CA------CCTTATTTAAGGG
259 TT-TTGTTCCCAATC-TGAAAAGAATGGAGA-TATTAAGAGAATCATGCTTGCCGTATTTAAGAG
** * * * * ** *
2017029 ATGAACTTCGATTTTAATGAAAATAGGGCAAAGAAAAGATTTTCAAGCAAATGAAAATGAACAAT
321 ATGAACAACAATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAAT
2017094 ATCATTTA
386 ATCATTTA
2017102 TATCTGAATG
Statistics
Matches: 756, Mismatches: 84, Indels: 39
0.86 0.10 0.04
Matches are distributed among these distances:
462 2 0.00
463 104 0.14
464 4 0.01
466 73 0.10
469 9 0.01
470 11 0.01
471 112 0.15
472 5 0.01
473 12 0.02
474 388 0.51
475 16 0.02
476 20 0.03
ACGTcount: A:0.37, C:0.15, G:0.19, T:0.30
Consensus pattern (472 bp):
TTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGC
ATCAATTTAGTCTATCCTAATGAGAAGACTATGTTTATGGTGCCAAATCCTTAAAAGAATGGGGA
TTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAAGATGGA
AGGAAAACCTTTTCTTGCGACACCAAAGTGTCAATGTCATGTATCCTAACGAAGAGAATATGTTT
TTGTTCCCAATCTGAAAAGAATGGAGATATTAAGAGAATCATGCTTGCCGTATTTAAGAGATGAA
CAACAATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCAT
TTACCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACCAAATGAATGAAGATTATTACTTGA
ATCCATGTTTGTCTCAT
Found at i:2016887 original size:158 final size:158
Alignment explanation
Indices: 2015788--2016887 Score: 509
Period size: 158 Copynumber: 7.0 Consensus size: 158
2015778 TTGAGGCACG
*
2015788 AACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCATTTCTTGCGAAACCAAAGCATCAATGTCA
1 AACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATGTCA
* * * * *
2015853 ACTATCCTAATGGGAAGACTATGTTTGTGGTGCCAAAT-CTT-GAA-AA--GA-A--AGTATGAC
66 TCTATCCTAATGAGAAGAATATGTTTATGGTGCCAAATCCTTAAAAGAATGGAGATTAGTATGA-
* *
2015910 TATTC-ATGTTTGCCTTATTTAAGAGACA
130 GATTCAATGTTTGTCTTATTTAAGAGACA
* * *** * * * * **
2015938 AACTTTGA-TTCAATCAAAAA-CAAT-GGAAGGAAAACCTTTTCTTACGATACCAAGGCGGCAAT
1 AACTTAGACTT-TA-CAAAAATTGGTGGGAA-GAAAGCC-TTTCTTGCGAAACCAAAGCATCAAT
* * * * * * * * * *
2016000 GTCATGTATCCTAACGA-AGGAAAAGTGTTTTTGGTTCCCAATCCTGAAAAGAAGGGAG-CTA--
62 GTCATCTATCCTAATGAGAAGAATA-TGTTTATGGTGCCAAATCCTTAAAAGAATGGAGATTAGT
* * * * * **
2016061 A-GAGAATC-ATGCTTGCCGTATTTAAGTGATG
126 ATGAGATTCAATGTTTGTCTTATTTAAGAGACA
* * * ** ** * * ** * *
2016092 AACTTCGATTTTA-AGGAAAATAGG-GCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATA
1 AACTTAGACTTTACA--AAAATTGGTGGGAAG-AAAGCCTTTCTTGCGAAACCAAAGCATCAATG
* * * * * * * * *
2016155 TCATTTATCCTAATGAGGAGAATGTGTTTATTGTGCCTAATCAC-CAAATGAATGAAGATTATTA
63 TCATCTATCCTAATGAGAAGAATATGTTTATGGTGCCAAATC-CTTAAAAGAATGGAGATTAGTA
* * * *
2016219 CTTGA-A-TCCATGTTTGTCTCATTTGAG-GCACG
127 --TGAGATTCAATGTTTGTCTTATTTAAGAG-ACA
* * * * *
2016251 AACTTAGACTTTACAAAAATTAGTGGGAAAAAAGCCTTTCTAGCTAAACCAAAGCATCAAT-TTA
1 AACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATGTCA
* * * *
2016315 GTCAATCCTAATGAGAAGACTTTGTTTATGGTGCCAAATCCTTAAAAGAATGGGGATTAGTATGA
66 -TCTATCCTAATGAGAAGAATATGTTTATGGTGCCAAATCCTTAAAAGAATGGAGATTAGTATGA
* * *
2016380 GTATTC-ATGTTTGTCATAATTGAGAGACA
130 G-ATTCAATGTTTGTCTTATTTAAGAGACA
* * * **
2016409 AACTTTGA-TTCTATCAAAAA-TGGT-GGAAGGAAAACCTTTTCTTGCGACACCAAAGTGTCAAT
1 AACTTAGACTT-TA-CAAAAATTGGTGGGAA-GAAAGCC-TTTCTTGCGAAACCAAAGCATCAAT
* * * * * * *
2016471 GTCATGTATCCTAACGA-AGAGAATATGTTT-TTGTTCCCAAT-CTTAAAAAAATGGAGATTATT
62 GTCATCTATCCTAATGAGA-AGAATATGTTTATGGTGCCAAATCCTTAAAAGAATGGAGATTAGT
* * * * * **
2016533 AAGAGAATCAATGCTTGCCTTATTTATGAGATG
126 ATGAGATTCAATGTTTGTCTTATTTAAGAGACA
* * * * ** ** * * ** *
2016566 AAC-AACAATTTTA-AGGAAAATAGG-GTAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAAT
1 AACTTA-GACTTTACA--AAAATTGGTGGGAAG-AAAGCCTTTCTTGCGAAACCAAAGCATCAAT
* * * * * * * * * *
2016628 GTCATTTACCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC-CAAATGAATGAAGATTATT
62 GTCATCTATCCTAATGAGAAGAATATGTTTATGGTGCCAAATC-CTTAAAAGAATGGAGATTAGT
* * * *
2016692 ACTTGA-A-TCTATGTTTGTCTCATTTGAG-GCACG
126 A--TGAGATTCAATGTTTGTCTTATTTAAGAG-ACA
* *
2016725 AACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCACCAAT-TTA
1 AACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATGTCA
* * *
2016789 GTCTATTCTAATGAGAAGACTATGTTTATGGTGCCAAATCCTTAAAAGAATGGGGATTAGTATGA
66 -TCTATCCTAATGAGAAGAATATGTTTATGGTGCCAAATCCTTAAAAGAATGGAGATTAGTATGA
*
2016854 GTATTC-ACGTTTGTCTTATTTAAGAGACA
130 G-ATTCAATGTTTGTCTTATTTAAGAGACA
2016883 AACTT
1 AACTT
2016888 TAATTCTATC
Statistics
Matches: 678, Mismatches: 205, Indels: 126
0.67 0.20 0.12
Matches are distributed among these distances:
149 6 0.01
150 18 0.03
151 53 0.08
152 3 0.00
153 2 0.00
154 88 0.13
155 16 0.02
156 12 0.02
157 102 0.15
158 241 0.36
159 126 0.19
160 9 0.01
161 2 0.00
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (158 bp):
AACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATGTCA
TCTATCCTAATGAGAAGAATATGTTTATGGTGCCAAATCCTTAAAAGAATGGAGATTAGTATGAG
ATTCAATGTTTGTCTTATTTAAGAGACA
Done.