Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold409
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3905031
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
File 14 of 25
Found at i:2018048 original size:476 final size:473
Alignment explanation
Indices: 2017136--2019741 Score: 3126
Period size: 475 Copynumber: 5.5 Consensus size: 473
2017126 CCTAGCACTA
* * * *
2017136 TTTTTGCTAGAATCAAAGTTTGTCTCTTAATTAAGACAAACATGAATAGTCATACTAATCCCCAT
1 TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCTAT
* * * * *
2017201 ACTTTTCAGGATTTGGCACCATAAGCATAGTTTTTTCATCAA-GACAGACAAAATTGATGCTTTG
66 TCTTTTCAGGATTTGGCACCATAAACATAGTCTTCTCAT-AAGGACAGACAAAATTGATGCTTTA
*
2017265 GATTCGCAAGAAATGCTTTCTT-CCACCAATTTTTGTAAAGTCTAAGTTCATGCCTTAAGTGAGA
130 GATTCGCAAGAAA-GCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAGTGAGA
* * * * * *
2017329 CAGACAAGGATTCTAGAAATAATATTCATTCATTTTGTAATTAGGCACTATAAACGCATTCGCCG
194 CAAACATGGATTCTAGAAATAATCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTCCT
* * * *
2017394 CATTGGGAGAAATGATATAGATGGTTTTCTTTTCCATGAAAATTTTTTCTTTACCCTATTTTCCC
259 CATTAGGAGAAATGATATAGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTACCCTATTTTCCT
* * * *
2017459 TAAAATCGTAGTTCATCTCATAAATAAGGCAAGCATTGATTCTCTTTATAGTCTCCATTATTTTC
324 TAAAATCGTAGTTCATCCCATAAATAAGGCAAGCATTGATTCTCTTAACAGTCTCCATT-CTTTC
* * * *
2017524 -AGAATTTGGAACCAAAAACATATTCCTTTCATTATGATACAAGACATTGACGCTTTGGGGTCGC
388 AAG-A-TTGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGCTTTGGTGTCGC
2017588 AAGAAAAGCTTTTCTTGCAACCG
451 AAGAAAAGCTTTTCTTGCAACCG
2017611 TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCTAT
1 TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCTAT
* * * * *
2017676 TCTTTTCAGGATTAT-GCACCCTAAACTTAGTCTTCTTATAAGGATAGACAAAATTGATGCTTTG
66 TCTTTTCAGGATT-TGGCACCATAAACATAGTCTTCTCATAAGGACAGACAAAATTGATGCTTTA
* * * * * *
2017740 GTTTCCCAAGAAATGCTTTCTTCCCTCCAATTTTCGTAAAGTCTAAGTTCGTGCCTGAAGTGAGA
130 GATTCGCAAGAAA-GCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAGTGAGA
* * * *
2017805 CAAACATGGATTCCAAAAATAATCTTCATTTATTTTGTAATTAGGCACTATAAACACATTATCCT
194 CAAACATGGATTCTAGAAATAATCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTCCT
* * *
2017870 CATTAGGATAAATGATATTGATGGTTTTCTTTTGCCTGAAAATCTTTTCTTTACCCTATTTTCCT
259 CATTAGGAGAAATGATATAGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTACCCTATTTTCCT
* * * * *
2017935 TAAAATCATAGTTTATCCCATAAATAAGGCAAGTAATGATTCTCTTAACAGCCTCCATTCTTTCC
324 TAAAATCGTAGTTCATCCCATAAATAAGGCAAGCATTGATTCTCTTAACAGTCTCCATTCTTT-C
* * * *
2018000 AAGAGTAGGAACCAAAATCACATTCCCTTT-ATTAGGATACATGACATTGACACTTTGTTGTCGC
388 AAGA-TTGGAACCAAAAACACATT-CCTTTCATTAGGATACATGACATTGACGCTTTGGTGTCGC
* **
2018064 AAGAAAAGGTTTTCCTT-CAATTG
451 AAGAAAAGCTTTT-CTTGCAACCG
* * * *
2018087 TTTTTGATAGAATCAAACTTTGTCTCTTAAATAAGACGAACAAGAATAGTCATACTAATCACC-A
1 TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATC-CCTA
* *
2018151 TTCTTTTCAGGATTTGGCACCATAAACATAGTCTTCTCATTAGGACAGACAAAATTGATGCTTTG
65 TTCTTTTCAGGATTTGGCACCATAAACATAGTCTTCTCATAAGGACAGACAAAATTGATGCTTTA
* * * * *
2018216 GATTCGCAAGAAAGACTTTCTTGCCACCAATTATTGCT-AAGTCGAAGTCCATGCCTCAAATGAG
130 GATTCGCAAGAAAG-CTTTCTTCCCACCAATTTTTG-TAAAGTCTAAGTTCATGCCTCAAGTGAG
* * * ** *
2018280 ATAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGTTTAGGCACTATAAACACGTTCTCC
193 ACAAACATGGATTCTAGAAATAATCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTCC
* * * * *
2018345 TCATTAGGAGAAATGATATAGATGGTTTTCCTTTGTATGAAAATCTTTCCTTT-GCCTATTTTCT
258 TCATTAGGAGAAATGATATAGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTACCCTATTTTCC
**
2018409 TTAAAATCGTAGTTCATCCCATAAATAAGGCAAGCATTGATTCTCACAACAGTCTCCATTCTGTT
323 TTAAAATCGTAGTTCATCCCATAAATAAGGCAAGCATTGATTCTCTTAACAGTCTCCATTCT-TT
* * *
2018474 CAAGATTGAGAACCATAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCAC
387 CAAGATTG-GAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGCTTTGGTGTCGC
* * *
2018539 TAGAAAAGCTTTTCCTGCAACTG
451 AAGAAAAGCTTTTCTTGCAACCG
* * * * *
2018562 TTTTTAATAGAATCAAAGTTAGTTTCTTAAATAAGACAAACTTGAATACTCATACTAATCCCCAT
1 TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCTAT
* * * * * *
2018627 TCTTTTCAAGATTTGACACCATAAACATAGTCTTCTCATTAGGATAGTCTAAATTGATGCTTTAG
66 TCTTTTCAGGATTTGGCACCATAAACATAGTCTTCTCATAAGGACAGACAAAATTGATGCTTTAG
* * *
2018692 TTTCGCAAGAAAGGC-TTCTTCCCACCAATTTTTGTAAAGTCTAAGATCGTGCCTCAAGTGAGAC
131 ATTCGCAAGAAA-GCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAGTGAGAC
* * * * *
2018756 AAACATGGATTCTAGTAATAATCTACATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTT
195 AAACATGGATTCTAGAAATAATCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTCCTC
* * * * * *
2018821 ATTAGTATAAATGATATTGATGTTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTC
260 ATTAGGAGAAATGATATAGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTACCCTATTTTCCTT
* * * * *
2018886 AAAATCGAAGTTCATCACTTAAATAAGGCAAGCATTGATTATCTTAACAATCTCCATTCTTAT-A
325 AAAATCGTAGTTCATCCCATAAATAAGGCAAGCATTGATTCTCTTAACAGTCTCCATTCTT-TCA
* * *
2018950 GGATTGTGAACCAAAAATACATTCCCTTT-GTTAGGATACATGACATTGACGCTTTGGTGTCGCA
389 AGATTG-GAACCAAAAACACATT-CCTTTCATTAGGATACATGACATTGACGCTTTGGTGTCGCA
* *
2019014 AGAAATGGTTTTCCTT-CAACCG
452 AGAAAAGCTTTT-CTTGCAACCG
* * *
2019036 TTTTTGAAAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTAT
1 TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCTAT
** * * *
2019101 TCTTTTCTCGATTTGGCACCATAAACATAGTCTTCTCATTATGACAGACAAAATTAATGCTTTAG
66 TCTTTTCAGGATTTGGCACCATAAACATAGTCTTCTCATAAGGACAGACAAAATTGATGCTTTAG
* * * *
2019166 ATTCGCAAGAAAGACTTTCTTGCCC-CCAATTTTGGCT-AAGTCTAAGTTCATGCCCCAAATGAT
131 ATTCGCAAGAAAG-CTTTCTT-CCCACCAATTTTTG-TAAAGTCTAAGTTCATGCCTCAAGTGAG
* * * ** * *
2019229 ATAAACATGAATTCTAGTAACGATCTTCATTCATTTTGTAGTTAGGCACTATAAACACTTTCTCC
193 ACAAACATGGATTCTAGAAATAATCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTCC
* * * * *
2019294 TCATTTGGAGAAATGATATAGATGGTTTTCTTTTGTATGAAAATTTTTTCTTTGCCCTCTTTTCC
258 TCATTAGGAGAAATGATATAGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTACCCTATTTTCC
* * *
2019359 TTAAAATCGTAGTTCATCCCATAAATAAGGCAAGCCTTGATTCTCTTAATAGTCTCTATTCTTTT
323 TTAAAATCGTAGTTCATCCCATAAATAAGGCAAGCATTGATTCTCTTAACAGTCTCCATTC-TTT
** * * * **
2019424 CGGGATTGGGAACCAAAAACACATTCCTTTCATTATGATACATGACATTGATGCTTTGGGGTCAT
387 CAAGATT-GGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGCTTTGGTGTCGC
*
2019489 ATGAAAAGCTTTTCTTGCAACCG
451 AAGAAAAGCTTTTCTTGCAACCG
* * * ** *
2019512 TTTTTGATAGAACCAAAGTTTGTCTCTTAAATAAGACAAACATGATATTGACTCA-ATTGAGACA
1 TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGA-A-T-ACTCATACTAATCCC
* * * ** * * * ** *
2019576 TGA-ACTTTTAAGGGTTACGCACCATAAACTTAGTCTTCTCATAAGGATACATGATATTGACT-C
63 T-ATTCTTTTCAGGATTTGGCACCATAAACATAGTCTTCTCATAAGGACAGACAAAATTGA-TGC
* ** * * * *
2019639 TTTAGTTTCATAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTTTAAGTTCGTGACTCAATT
126 TTTAGATTCGCAAGAAA-GCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAGT
* *
2019704 GAGACAAACAAGGATTCAAGTAAA-AATCTTCATTCATT
190 GAGACAAACATGGATTCTAG-AAATAATCTTCATTCATT
2019742 AGGGTAAATG
Statistics
Matches: 1819, Mismatches: 272, Indels: 77
0.84 0.13 0.04
Matches are distributed among these distances:
473 2 0.00
474 348 0.19
475 670 0.37
476 647 0.36
477 19 0.01
478 124 0.07
479 9 0.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (473 bp):
TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCTAT
TCTTTTCAGGATTTGGCACCATAAACATAGTCTTCTCATAAGGACAGACAAAATTGATGCTTTAG
ATTCGCAAGAAAGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAGTGAGACA
AACATGGATTCTAGAAATAATCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTCCTCA
TTAGGAGAAATGATATAGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTACCCTATTTTCCTTA
AAATCGTAGTTCATCCCATAAATAAGGCAAGCATTGATTCTCTTAACAGTCTCCATTCTTTCAAG
ATTGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACGCTTTGGTGTCGCAAGAA
AAGCTTTTCTTGCAACCG
Found at i:2022334 original size:476 final size:476
Alignment explanation
Indices: 2019737--2024154 Score: 5868
Period size: 476 Copynumber: 9.3 Consensus size: 476
2019727 AAATCTTCAT
* * * * * * *
2019737 TCATTAGG-GTAAATGATATTGATTGTTTTCTTTCGCATTAAAATCTTTTCTATACCCTATTTTC
1 TCATTAGGAG-AAATGATATAGATGGTTTTCTTTTGTATGAAAATCTTTTCTTTGCCCTATTTTC
* * * * * *
2019801 TTTGAAATCGTAGTTCATCCCATAAATACGGCAAGCATTGATTCTTTTAATAATCTCCATT-TTT
65 CTTAAAATCGTAGTTCATCCCATAAATAAGGCAAGCATTGATTCTCTTAACAGTCTCCATTCTTT
* * * *
2019865 TCAAGATTGGGAA-GAAAAACACATTCCTTTCGTTAGGATACATGACATTGATGCTTTGGTGTCA
130 TCAAGATTGAGAACCATAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCA
* * * * * **
2019929 CAAGAAAAGGTTTTCCTTTC-ACGGTTTTTGATAGAATCAAATTTTGTTTCTTATTTATA-ACAA
195 CAAGAAAAGCTTTT-CTTGCAACTGTTTTTAATAGAATCAAAGTTTGTTTCTTAAATA-AGACAA
*
2019992 ACATGAATACTCATACTAATCCCCATTCTTTTTAGGATTTGGCACCATAAACATAGTCTTCTCAT
258 ACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTTGGCACCATAAACATAGTCTTCTCAT
* * *
2020057 TTGGATAGACTAAATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTT-CCTCCCAATTTTTGTAA
323 TAGGATAGACAAAATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTGCC-ACCAATTTTTGTAA
* * * * *
2020121 AGTCTAAGTTCATGCCTTAAATGAGACAAACATGGATTCAAGTAATAATCTTCATTCATTCTGTG
387 AGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTG
2020186 ATTAGGCACTATAAACACATTCTCC
452 ATTAGGCACTATAAACACATTCTCC
* *
2020211 TCATTAGGATG-AATGATATTAG-TGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTT
1 TCATTAGGA-GAAATGATA-TAGATGGTTTTCTTTTGTATGAAAATCTTTTCTTTGCCCTATTTT
* *
2020274 CCTTAAAATCGTAGTTCAT-CAATTAAATAAGGCAAGGATTGATTCTCTTAACAGTCTCCATTCT
64 CCTTAAAATCGTAGTTCATCCCA-TAAATAAGGCAAGCATTGATTCTCTTAACAGTCTCCATTCT
* * * * * **
2020338 TTTCAAGTTTG-GTAACCAAAAACACTTTCCCTTCGTTAGGATACATGACATTG-TCGCTTTACT
128 TTTCAAGATTGAG-AACCATAAACACATTCCTTTCATTAGGATACATGACATTGAT-GCTTTGGT
** * * * * *
2020401 GTTGCAAGAAAAGGTTTTCCTTCCATC-GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA
191 GTCACAAGAAAAGCTTTT-CTTGCAACTGTTTTTAATAGAATCAAAGTTTGTTTCTTAAATAAGA
* * * **
2020465 CAAGCATGAATAGTTATACTGGTCCCCATTCTTTTCAGGATTT-GCACCATAAACATAGTCTTCT
255 CAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTTGGCACCATAAACATAGTCTTCT
* ** * * * * * * *
2020529 AATTAGGATAGATGAGATTGAAGCTTTGGTTTTGTAAGAAAGGCTTTTTTCCCACAAATTTTTGT
320 CATTAGGATAGACAAAATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTGCCACCAATTTTTGT
* * *
2020594 AAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGATTCCAGTAATGATCTTCAGTCATTTTG
385 AAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTG
*
2020659 TAATTAGGCACTATAAACACATTCTCC
450 TGATTAGGCACTATAAACACATTCTCC
* * * * * *
2020686 TTATTAGGATAAATGATATTGATGGTTTT-TTGTTGAATGAAAATCTTTCCTTTACCCTATTTTC
1 TCATTAGGAGAAATGATATAGATGGTTTTCTT-TTGTATGAAAATCTTTTCTTTGCCCTATTTTC
* * *
2020750 CTTAAAATCGTAGTTCATCCCATAAATAAGGCAAGCATTGATTCCCTTAACAATCT---TTGTTT
65 CTTAAAATCGTAGTTCATCCCATAAATAAGGCAAGCATTGATTCTCTTAACAGTCTCCATT-CTT
* * * * *
2020812 TTCAAGATTGGGAA-CAAAAACACATTCCCTTCGTTAGGATACATGACATTGATGCCTTGGTGTC
129 TTCAAGATTGAGAACCATAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTC
* * ** * * * *
2020876 GCAAGAAAAGGTTTTCCTT-CTGCCGTTTTTTATAGAAAT-AAAGTTTGTCTCTTAATTAAGACA
194 ACAAGAAAAGCTTTT-CTTGCAACTGTTTTTAATAG-AATCAAAGTTTGTTTCTTAAATAAGACA
* *
2020939 AACATGAATAGTCATACTAATCCCTATTCTTTTCAGGATTTGGCACCATAAACATAGTCTTCTCA
257 AACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTTGGCACCATAAACATAGTCTTCTCA
* *
2021004 TTAGGATTGACAAAATTGATGCTTTGGTTTCGCAAGAAATGCTTTCTT-CCACCAATTTTTGTAA
322 TTAGGATAGACAAAATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTGCCACCAATTTTTGTAA
* * * * * * * *
2021068 AGTTTAAGTCCGTGCCTTAAGTGAGACAAACATGGATTCCAGAAATAATCTTCATTCATTTTGTA
387 AGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTG
2021133 ATTAGGCACTATAAACACATTCTCC
452 ATTAGGCACTATAAACACATTCTCC
* *
2021158 TCATTAGGAGAAATGATATAGATGGTTTTCTTTTGCATGAAAAAT-TTTTCTTTGCCCTACTTTC
1 TCATTAGGAGAAATGATATAGATGGTTTTCTTTTGTATG-AAAATCTTTTCTTTGCCCTATTTTC
* * *
2021222 CCTAAAATCGTAGTTCATCCCATAAATAAGGCAAGCATTAATTCTCTTAATAGTCTCCATTCTTT
65 CTTAAAATCGTAGTTCATCCCATAAATAAGGCAAGCATTGATTCTCTTAACAGTCTCCATTCTTT
* * * *
2021287 TC-AGAATTTG-GAACCAAAAACATATTCCTTTCATTAGGATACACGACATTGATGCTTTGGGGT
130 TCAAG-A-TTGAGAACCATAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGT
* * * * * *
2021350 CGCAAGAAAAGCTTTTCTTGCAACCGTTTTTGATAGAATTAAAATTTGTCTCTTAAATAAGACAA
193 CACAAGAAAAGCTTTTCTTGCAACTGTTTTTAATAGAATCAAAGTTTGTTTCTTAAATAAGACAA
* * * * ** * *
2021415 CCATGAATACTCATGCTAATCCCTATTCTTTTAAGGATTACGCACCCTAAACTTAGTCTTCTCAT
258 ACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTTGGCACCATAAACATAGTCTTCTCAT
* * ** * * * *
2021480 AAGAATAGATGAGATTGATGCTTTGGTTTC-CGAAGAAATGCTTTCTTCCCTCCAATTTTTGTAA
323 TAGGATAGACAAAATTGATGCTTTGGTTTCGC-AAGAAAGGCTTTCTTGCCACCAATTTTTGTAA
* * * ** *
2021544 AGTCTAAGTTCGTGCCTGAAGTGAGACAAACATGGATTCCAAAAATAATCTTCATTCA---T-T-
387 AGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTG
*
2021604 -TTAGGCATTATAAACACATTCTCC
452 ATTAGGCACTATAAACACATTCTCC
* * * * * * * *
2021628 TCATCAGGATAAATGACATTGATGGTTTTTTTTTGCT-TGAAAATATTTTTTTTACCCTATTTTC
1 TCATTAGGAGAAATGATATAGATGGTTTTCTTTTG-TATGAAAATCTTTTCTTTGCCCTATTTTC
* * * * *
2021692 CTTAAAATCATAGTTTATCCCATAAATAAGGCAAGTAATGATTCTCTTAATAGTCTCCATTCTTT
65 CTTAAAATCGTAGTTCATCCCATAAATAAGGCAAGCATTGATTCTCTTAACAGTCTCCATTCTTT
* * * * * * * *
2021757 CCAGGAGTGGGAACCA-AAATCACATTCCCTTCATTAGGATACATTACATTGACGCTTTGTTGTC
130 TCAAGATTGAGAACCATAAA-CACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTC
* * * * * * *
2021821 TCAAGTAAAGGTTTTCCTT-CAATTGTTTTTGATAGAATCAAACTTTGTCTCTTAAATAAGACAA
194 ACAAGAAAAGCTTTT-CTTGCAACTGTTTTTAATAGAATCAAAGTTTGTTTCTTAAATAAGACAA
* * * *
2021885 ACAAGAATAGTCATACTAATCCCCATTCTTTTCAGGATTTCGCACCATAAACATAGTCTTCACAT
258 ACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTTGGCACCATAAACATAGTCTTCTCAT
* * ** *
2021950 TAGGACAGACAAAATTGATGCTTTGGATTCGCAAGAAACACTTTCTTGCCACCAATTATTGCT-A
323 TAGGATAGACAAAATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTGCCACCAATTTTTG-TAA
*
2022014 AGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGAAATGATCTTCATTCATTTTGTG
387 AGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTG
*
2022079 ATTAGACACTATAAACACATTCTCC
452 ATTAGGCACTATAAACACATTCTCC
* *
2022104 TCATTGGGAGAAATGATATAGATGGTTTTCTTTTGTATTAAAATCTTTTCTTTGCCCTATTTTCC
1 TCATTAGGAGAAATGATATAGATGGTTTTCTTTTGTATGAAAATCTTTTCTTTGCCCTATTTTCC
* *
2022169 TTAAAATCGTAGTTCATCCCATAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTGTT
66 TTAAAATCGTAGTTCATCCCATAAATAAGGCAAGCATTGATTCTCTTAACAGTCTCCATTCTTTT
*
2022234 CAAGATTGAGAACCATAAACGCATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCAC
131 CAAGATTGAGAACCATAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCAC
* * *
2022299 AAGAAAAGCTTTTCTTGCAATTGTTTTTAATAGAATCAAAGTTAGTTTCTTAAATAAGACAAACT
196 AAGAAAAGCTTTTCTTGCAACTGTTTTTAATAGAATCAAAGTTTGTTTCTTAAATAAGACAAACA
* *
2022364 TTAATACTCATACTAATCCCCATTCTTTTCAAGATTTGGCACCATAAACATAGTCTTCTCATTAG
261 TGAATACTCATACTAATCCCCATTCTTTTCAGGATTTGGCACCATAAACATAGTCTTCTCATTAG
* * ** *
2022429 GATAGACAAAATTGACGCTTTGGATTCGCAAGAAACACTTTCTTGCCACCAATTATTGCT-AAGT
326 GATAGACAAAATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTGCCACCAATTTTTG-TAAAGT
* * * *
2022493 CTAAGTTTGTGCCACAAATGAGACAAACAAGGATTCTAGAAATGATCTTCATTCATTTTGTGATT
390 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATT
* *
2022558 AGACGCTATAAACACATTCTCC
455 AGGCACTATAAACACATTCTCC
* * *
2022580 TCACTGGGAGAAATGATATAGATGGTTTTCCTTTGTATGAAAATCTTTTCTTTGCCCTATTTTCC
1 TCATTAGGAGAAATGATATAGATGGTTTTCTTTTGTATGAAAATCTTTTCTTTGCCCTATTTTCC
* * * *
2022645 TTAAAATTGTAGTTCATCCCATAAATAAGGCAAGCATTGATTCTCATAACAATCTCCATTCTGTT
66 TTAAAATCGTAGTTCATCCCATAAATAAGGCAAGCATTGATTCTCTTAACAGTCTCCATTCTTTT
2022710 CAAGATTGAGAACCATAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCAC
131 CAAGATTGAGAACCATAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCAC
* * * *
2022775 AAGAAAAGCTTTTCTTGCAATTTTTTTTAATAGAATCAAAGTTAGTTTCTTAAATAAGACAAACT
196 AAGAAAAGCTTTTCTTGCAACTGTTTTTAATAGAATCAAAGTTTGTTTCTTAAATAAGACAAACA
* *
2022840 TGAATACTCATACTAATACCCATTCTTTTTAGGATTTGGCACCATAAACATAGTCTTCTCATTAG
261 TGAATACTCATACTAATCCCCATTCTTTTCAGGATTTGGCACCATAAACATAGTCTTCTCATTAG
** ** *
2022905 GATAGACAAAATTGATGCTTTGGAATCGCAAGAAACACTTTCTTGCCACCAATTATTGCT-AAGT
326 GATAGACAAAATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTGCCACCAATTTTTG-TAAAGT
*
2022969 CTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCATTTTGTGATT
390 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATT
2023034 AGGCACTATAAACACATTCTCC
455 AGGCACTATAAACACATTCTCC
* *
2023056 TCATTGGGAGAAATGATATAGATGGTTTTCCTTTGTATGAAAATCTTTTCTTTGCCCTATTTTCC
1 TCATTAGGAGAAATGATATAGATGGTTTTCTTTTGTATGAAAATCTTTTCTTTGCCCTATTTTCC
* *
2023121 TTAAAATCATAGTTCATCCCATAAATAAGGCAAGCATTGATTCT-TATAACAGTCTCCATTCTAT
66 TTAAAATCGTAGTTCATCCCATAAATAAGGCAAGCATTGATTCTCT-TAACAGTCTCCATTCTTT
*
2023185 TCAACATTGAGAACCATAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCA
130 TCAAGATTGAGAACCATAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCA
* *
2023250 CAACAAAAGCTTTTCTTGCAACTGTTTTTAATAGAATCAAAGTTAGTTTCTTAAATAAGACAAAC
195 CAAGAAAAGCTTTTCTTGCAACTGTTTTTAATAGAATCAAAGTTTGTTTCTTAAATAAGACAAAC
*
2023315 TTGAATACTCATACTAATCCCCATTCTTTTCAGGATTTGGCACCATAAACATAGTCTTCTCATTA
260 ATGAATACTCATACTAATCCCCATTCTTTTCAGGATTTGGCACCATAAACATAGTCTTCTCATTA
* * *
2023380 GGATAGACAAAATTGATGCTTTGGATTCGCAAGAAAGACTTTCTTGCCACCAATTATTGCT-AAG
325 GGATAGACAAAATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTGCCACCAATTTTTG-TAAAG
* * *
2023444 TCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTTATTTTGTGTT
389 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
2023509 TAGGCACTATAAACACATTCTCC
454 TAGGCACTATAAACACATTCTCC
* * *
2023532 TCATTAGGAGAAATGATATAGATGGTTTTCCTTTATATGAAAATCTTTCCTTTG-CCTATTTTCC
1 TCATTAGGAGAAATGATATAGATGGTTTTCTTTTGTATGAAAATCTTTTCTTTGCCCTATTTTCC
* * * * *
2023596 TAAAAATCGTAGTTCATGCCATAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCACTCTGTT
66 TTAAAATCGTAGTTCATCCCATAAATAAGGCAAGCATTGATTCTCTTAACAGTCTCCATTCTTTT
2023661 CAAGATTGAGAACCATAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCAC
131 CAAGATTGAGAACCATAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCAC
* ** * *
2023726 TAGAAAAAATTTTCTTGCAACTGTTTTTAATAGAATCAAAGTTAGTTTCTTAAATAAGACAAACT
196 AAGAAAAGCTTTTCTTGCAACTGTTTTTAATAGAATCAAAGTTTGTTTCTTAAATAAGACAAACA
*
2023791 TGAATACTCATACTAATCCCCATTCTTTTCAAGATTTGGCACCATAAACATAGTCTTCTCATTAG
261 TGAATACTCATACTAATCCCCATTCTTTTCAGGATTTGGCACCATAAACATAGTCTTCTCATTAG
* * * *
2023856 GATAGTCTAAATTGATGCTTTCGTTTCGCAAGAAAGGC-TTCTTCCCACCAATTTTTGTAAAGTC
326 GATAGACAAAATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTGCCACCAATTTTTGTAAAGTC
* * *
2023920 TAAGATT-GTGCCTCAAGTGAGACAAACATGGATTCTAGTAATAATCTACATTCATTTTGTGATT
391 TAAG-TTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATT
2023984 AGGCACTA-AATACACATTCTCC
455 AGGCACTATAA-ACACATTCTCC
* * * * *
2024006 TTATTAGTATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCC
1 TCATTAGGAGAAATGATATAGATGGTTTTCTTTTGTATGAAAATCTTTTCTTTGCCCTATTTTCC
*
2024071 -TAAAATCGTAGTTCATCCCATAAATAAGGCAAGTC-TTGATTCTCTTAACAGTCTCTATTCTTT
66 TTAAAATCGTAGTTCATCCCATAAATAAGGCAAG-CATTGATTCTCTTAACAGTCTCCATTCTTT
** *
2024134 TCGGGATTG-GCACCATAAACA
130 TCAAGATTGAGAACCATAAACA
2024155 AAATCAATGT
Statistics
Matches: 3552, Mismatches: 335, Indels: 115
0.89 0.08 0.03
Matches are distributed among these distances:
469 10 0.00
470 384 0.11
471 8 0.00
472 330 0.09
473 105 0.03
474 328 0.09
475 774 0.22
476 1609 0.45
477 4 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (476 bp):
TCATTAGGAGAAATGATATAGATGGTTTTCTTTTGTATGAAAATCTTTTCTTTGCCCTATTTTCC
TTAAAATCGTAGTTCATCCCATAAATAAGGCAAGCATTGATTCTCTTAACAGTCTCCATTCTTTT
CAAGATTGAGAACCATAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCAC
AAGAAAAGCTTTTCTTGCAACTGTTTTTAATAGAATCAAAGTTTGTTTCTTAAATAAGACAAACA
TGAATACTCATACTAATCCCCATTCTTTTCAGGATTTGGCACCATAAACATAGTCTTCTCATTAG
GATAGACAAAATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTGCCACCAATTTTTGTAAAGTC
TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTA
GGCACTATAAACACATTCTCC
Found at i:2022450 original size:159 final size:157
Alignment explanation
Indices: 2019851--2023895 Score: 1001
Period size: 159 Copynumber: 25.6 Consensus size: 157
2019841 ATTCTTTTAA
* ** * * * *
2019851 TAATCTCCATT-TTTTCAAGA-TTGGGAAGAAAAACACATTCCTT-TCGTTAGGATACATGACAT
1 TAATCTCCATTCTTTTCAAGATTTGGCACCATAAACACATT-CTTCTCATTAGGATAGATGAAAT
* * * ** * * * *
2019913 TGATGCTTTGGTGTCACAAGAAAAGGTTTTCCTTTC-ACGGTTTTTGATAGAATCAAATTTTGTT
65 TGATGCTTTGGT-TCGCAAGAAAAGCTTTT-CTTGCAACTATTTTTAATA-AATCAAAGTTAGTG
* ** * *
2019977 TCTTATTTATA-ACAAACATGAATACTCATAC
127 CCTTAAATA-AGACAAACATGGATTCTCATAC
* * * * * *
2020008 TAATCCCCATTCTTTTTAGGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAGACT-AAAT
1 TAATCTCCATTCTTTTCAAGATTTGGCACCATAAACACATTCTTCTCATTAGGATAGA-TGAAAT
* * ** * * *
2020072 TGATGCTTTGGTTTCGCAAGAAAGGC-TTTCTTCCTCCCAATTTTT-GTAAAGTCTAAGTTCA-T
65 TGATGCTTTGG-TTCGCAAGAAAAGCTTTTCTTGC-AACTATTTTTAATAAA-TCAAAGTT-AGT
* * *
2020134 GCCTTAAATGAGACAAACATGGATTC-AAGTAA
126 GCCTTAAATAAGACAAACATGGATTCTCA-TAC
* * ** * * * *
2020166 TAATCTTCATTC-ATTCTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGAT-GAATGATA
1 TAATCTCCATTCTTTTC-AAGATTTGGCACCATAAACACATTCTTCTCATTAGGATAG-ATGAAA
* ** * * * * **
2020229 TT-AGTGGTTTTCTTTTGCATGAAAATCTTTTCTTTGC--CTTATTTTCCTTA-AAATCGTAGTT
64 TTGA-T-GCTTTGGTTCGCAAGAAAAGCTTTTC-TTGCAAC-TATTTT--TAATAAATCAAAGTT
* * ** * *
2020290 CA-T-CAATTAAATAAGGCAAGGATTGATTCTCTTAAC
123 -AGTGC-CTTAAATAAGACAAACATGGATTCTCAT-AC
* * * * * * * *
2020326 -AGTCTCCATTCTTTTCAAG-TTTGGTAACCAAAAACACTTTC-CCTTCGTTAGGATACATGACA
1 TAATCTCCATTCTTTTCAAGATTTGG-CACCATAAACACATTCTTC-TCATTAGGATAGATGAAA
* * * * * * *
2020388 TTG-TCGCTTTACTGTT-GCAAGAAAAGGTTTTCCTTCCATC-GTTTTTGATAGAATCAAAGTTT
64 TTGAT-GCTTT--GGTTCGCAAGAAAAGCTTTT-CTTGCAACTATTTTTAATA-AATCAAAGTTA
* * ** *
2020450 GT-CTCTTAAATAAGACAAGCATGAATAGTTATAC
124 GTGC-CTTAAATAAGACAAACATGGATTCTCATAC
** * * * * * *
2020484 TGGTCCCCATTCTTTTCAGGATTT-GCACCATAAACATAGTCTTCTAATTAGGATAGATGAGATT
1 TAATCTCCATTCTTTTCAAGATTTGGCACCATAAACACATTCTTCTCATTAGGATAGATGAAATT
* * * * * * * * * * *
2020548 GAAGCTTTGGTTTTGTAAGAAAGGCTTTT-TTCCCACAAATTTTT-GTAAAGTCTAAGTTCGTAC
66 GATGCTTTGG-TTCGCAAGAAAAGCTTTTCTTGCAAC-TATTTTTAATAAA-TCAAAGTTAGTGC
* * *
2020611 CTCAAATGAGACAAACATGGATTC-CAGTAA
128 CTTAAATAAGACAAACATGGATTCTCA-TAC
* * * ** * * * * * *
2020641 TGATCTTCAGTCATTTTGTA-ATTAGGCACTATAAACACATTCTCCTTATTAGGATAAATGATAT
1 TAATCTCCATTC-TTTTCAAGATTTGGCACCATAAACACATTCTTCTCATTAGGATAGATGAAAT
* * * * * * * **
2020705 TGATGGTTTTTTGTT-G-AATGAAAATCTTTCCTT-TACCCTATTTTCCTTA-AAATCGTAGTTC
65 TGAT-G-CTTTGGTTCGCAA-GAAAAGCTTTTCTTGCA-ACTATTTT--TAATAAATCAAAGTT-
* * * * * * *
2020766 A-TCCCATAAATAAGGCAAGCATTGATTCCCTTAAC
123 AGTGCCTTAAATAAGACAAACATGGATTCTCAT-AC
* * * * * * * *
2020801 -AATCT---TTGTTTTTCAAGA-TTGGGAACAAAAACACATTC-CCTTCGTTAGGATACATGACA
1 TAATCTCCATT-CTTTTCAAGATTTGGCACCATAAACACATTCTTC-TCATTAGGATAGATGAAA
* * *
2020860 TTGATGCCTTGGTGTCGCAAGAAAAGGTTTTCCTTCTGC--CGT-TTTTTATAGAAAT-AAAGTT
64 TTGATGCTTTGGT-TCGCAAGAAAAGCTTTT-C-T-TGCAAC-TATTTTTA-ATAAATCAAAGTT
* * * **
2020921 TGT-CTCTTAATTAAGACAAACATGAATAGTCATAC
123 AGTGC-CTTAAATAAGACAAACATGGATTCTCATAC
* * * * **
2020956 TAATC-CCTATTCTTTTCAGGATTTGGCACCATAAACATAGTCTTCTCATTAGGATTGACAAAAT
1 TAATCTCC-ATTCTTTTCAAGATTTGGCACCATAAACACATTCTTCTCATTAGGATAGATGAAAT
* * * * * ** **
2021020 TGATGCTTTGGTTTCGCAAGAAATGC-TTTCTTCCACCAATTTTT-GTAAAGTTTAAGTCCGTGC
65 TGATGCTTTGG-TTCGCAAGAAAAGCTTTTCTTGCAACTATTTTTAATAAA-TCAAAGTTAGTGC
* * * *
2021083 CTTAAGTGAGACAAACATGGATTC-CAGAAA
128 CTTAAATAAGACAAACATGGATTCTCA-TAC
* ** * * * * * *
2021113 TAATCTTCATTCATTTTGTA-ATTAGGCACTATAAACACATTCTCCTCATTAGGAGAAATGATAT
1 TAATCTCCATTC-TTTTCAAGATTTGGCACCATAAACACATTCTTCTCATTAGGATAGATGAAAT
* * ** * * ** * * *** **
2021177 AGATGGTTTTCTTTTGCATGAAAAATTTTTCTTTGC-CCTACTTTCCCTAAAATCGTAGTTCA-T
65 TGAT-GCTTTGGTTCGCAAGAAAAGCTTTTC-TTGCAACTATTTTTAAT-AAATCAAAGTT-AGT
* * * * ** * *
2021240 CCCATAAATAAGGCAAGCATTAATTCTCTTAA
126 GCCTTAAATAAGACAAACATGGATTCTCATAC
* * * * * * *
2021272 TAGTCTCCATTCTTTTC-AGAATTTGGAACCAAAAACATATTCCTT-TCATTAGGATACACGACA
1 TAATCTCCATTCTTTTCAAG-ATTTGGCACCATAAACACATT-CTTCTCATTAGGATAGATGAAA
* ** * * * *
2021335 TTGATGCTTTGGGGTCGCAAGAAAAGCTTTTCTTGCAACCGTTTTTGATAGAATTAAAATTTGT-
64 TTGATGCTTT-GGTTCGCAAGAAAAGCTTTTCTTGCAACTATTTTTAATA-AATCAAAGTTAGTG
* * * *
2021399 CTCTTAAATAAGACAACCATGAATACTCATGC
127 C-CTTAAATAAGACAAACATGGATTCTCATAC
** * ** * * * *
2021431 TAATC-CCTATTCTTTT-AAGGATTACGCACCCTAAACTTAGTCTTCTCATAAGAATAGATGAGA
1 TAATCTCC-ATTCTTTTCAA-GATTTGGCACCATAAACACATTCTTCTCATTAGGATAGATGAAA
* * ** * * * *
2021494 TTGATGCTTTGGTTTC-CGAAGAAATGC-TTTCTTCCCTCCAATTTTT-GTAAAGTCTAAGTTCG
64 TTGATGCTTTGG-TTCGC-AAGAAAAGCTTTTCTT-GCAACTATTTTTAATAAA-TCAAAGTTAG
* * * * *
2021556 TGCCTGAAGTGAGACAAACATGGATTC-CAAAAA
125 TGCCTTAAATAAGACAAACATGGATTCTC-ATAC
* ** * * * *
2021589 TAATCTTCATTCATTTT----A---GGCATTATAAACACATTCTCCTCATCAGGATAAATGACAT
1 TAATCTCCATTC-TTTTCAAGATTTGGCACCATAAACACATTCTTCTCATTAGGATAGATGAAAT
* ** * ** ** ** * * *
2021647 TGATGGTTTTTTTTTGCTTGAAAATATTTT-TTTTACCCTATTTTCCTTA-AAATCATAGTTTA-
65 TGAT-GCTTTGGTTCGCAAGAAAAGCTTTTCTTGCA-ACTATTTT--TAATAAATCAAAG-TTAG
* * * * *
2021709 TCCCATAAATAAGGCAAGTA-AT-GATTCTCTTAA
125 TGCCTTAAATAAGACAA--ACATGGATTCTCATAC
* * * * * * * * * *
2021742 TAGTCTCCATTCTTTCCAGGAGTGGGAACCA-AAATCACATTC-CCTTCATTAGGATACATTACA
1 TAATCTCCATTCTTTTCAAGATTTGGCACCATAAA-CACATTCTTC-TCATTAGGATAGATGAAA
* * * * * * * * * *
2021805 TTGACGCTTTGTTGTCTCAAGTAAAGGTTTTCCTT-CAATTGTTTTTGATAGAATCAAACTTTGT
64 TTGATGCTTTGGT-TCGCAAGAAAAGCTTTT-CTTGCAACTATTTTTAATA-AATCAAAGTTAGT
* * **
2021869 -CTCTTAAATAAGACAAACAAGAATAGTCATAC
126 GC-CTTAAATAAGACAAACATGGATTCTCATAC
* * * * * * * **
2021901 TAATCCCCATTCTTTTCAGGATTTCGCACCATAAACATAGTCTTCACATTAGGACAGACAAAATT
1 TAATCTCCATTCTTTTCAAGATTTGGCACCATAAACACATTCTTCTCATTAGGATAGATGAAATT
* * * ** * * *
2021966 GATGCTTTGGATTCGCAAGAAACA-C-TTTCTTGCCACCAATTATTGCTAAGTCTAAGTTCGTGC
66 GATGCTTTGG-TTCGCAAGAAA-AGCTTTTCTTG-CAACTATTTTTAATAAATCAAAGTTAGTGC
* * * *
2022029 CTCAAATGAGACAAACATGGATTCT-AGAAA
128 CTTAAATAAGACAAACATGGATTCTCA-TAC
* * ** * * * * * * * *
2022059 TGATCTTCATTCATTTT-GTGATTAGACACTATAAACACATTCTCCTCATTGGGAGAAATGATAT
1 TAATCTCCATTC-TTTTCAAGATTTGGCACCATAAACACATTCTTCTCATTAGGATAGATGAAAT
* * ** * * ** * * * **
2022123 AGATGGTTTTCTTTTGTATTAAAATCTTTTCTTTGC-CCTATTTTCCTTA-AAATCGTAGTTCA-
65 TGAT-GCTTTGGTTCGCAAGAAAAGCTTTTC-TTGCAACTATTTT--TAATAAATCAAAGTT-AG
* * * * *
2022185 TCCCATAAATAAGGCAAGCATTGATTCTCATAAC
125 TGCCTTAAATAAGACAAACATGGATTCTCAT-AC
* * * * * *
2022219 -AGTCTCCATTCTGTTCAAGA-TTGAGAACCATAAACGCATTCCTT-TCATTAGGATACATGACA
1 TAATCTCCATTCTTTTCAAGATTTG-GCACCATAAACACATT-CTTCTCATTAGGATAGATGAAA
* * * *
2022281 TTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTGCAATTGTTTTTAATAGAATCAAAGTTAGTT
64 TTGATGCTTTGGT-TCGCAAGAAAAGCTTTTCTTGCAACTATTTTTAATA-AATCAAAGTTAGTG
* * ** *
2022346 TCTTAAATAAGACAAACTTTAATACTCATAC
127 CCTTAAATAAGACAAACATGGATTCTCATAC
* * * **
2022377 TAATCCCCATTCTTTTCAAGATTTGGCACCATAAACATAGTCTTCTCATTAGGATAGACAAAATT
1 TAATCTCCATTCTTTTCAAGATTTGGCACCATAAACACATTCTTCTCATTAGGATAGATGAAATT
* * * * ** * * *
2022442 GACGCTTTGGATTCGCAAGAAACA-C-TTTCTTGCCACCAATTATTGCTAAGTCTAAGTTTGTGC
66 GATGCTTTGG-TTCGCAAGAAA-AGCTTTTCTTG-CAACTATTTTTAATAAATCAAAGTTAGTGC
** * * * *
2022505 CACAAATGAGACAAACAAGGATTCT-AGAAA
128 CTTAAATAAGACAAACATGGATTCTCA-TAC
* * ** * * * * * * * * * *
2022535 TGATCTTCATTCATTTT-GTGATTAGACGCTATAAACACATTCTCCTCACTGGGAGAAATGATAT
1 TAATCTCCATTC-TTTTCAAGATTTGGCACCATAAACACATTCTTCTCATTAGGATAGATGAAAT
* * ** * * * * * * ***
2022599 AGATGGTTTTCCTTTGTATGAAAATCTTTTCTTTGC-CCTATTTTCCTTA-AAATTGTAGTTCA-
65 TGAT-GCTTTGGTTCGCAAGAAAAGCTTTTC-TTGCAACTATTTT--TAATAAATCAAAGTT-AG
* * * * *
2022661 TCCCATAAATAAGGCAAGCATTGATTCTCATAAC
125 TGCCTTAAATAAGACAAACATGGATTCTCAT-AC
* * * *
2022695 -AATCTCCATTCTGTTCAAGA-TTGAGAACCATAAACACATTCCTT-TCATTAGGATACATGACA
1 TAATCTCCATTCTTTTCAAGATTTG-GCACCATAAACACATT-CTTCTCATTAGGATAGATGAAA
* * * *
2022757 TTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTGCAATTTTTTTTAATAGAATCAAAGTTAGTT
64 TTGATGCTTTGGT-TCGCAAGAAAAGCTTTTCTTGCAACTATTTTTAATA-AATCAAAGTTAGTG
* * * *
2022822 TCTTAAATAAGACAAACTTGAATACTCATAC
127 CCTTAAATAAGACAAACATGGATTCTCATAC
* * * * **
2022853 TAATAC-CCATTCTTTTTAGGATTTGGCACCATAAACATAGTCTTCTCATTAGGATAGACAAAAT
1 TAAT-CTCCATTCTTTTCAAGATTTGGCACCATAAACACATTCTTCTCATTAGGATAGATGAAAT
* * * * ** * * *
2022917 TGATGCTTTGGAATCGCAAGAAACA-C-TTTCTTGCCACCAATTATTGCTAAGTCTAAGTTCGTG
65 TGATGCTTTGG-TTCGCAAGAAA-AGCTTTTCTTG-CAACTATTTTTAATAAATCAAAGTTAGTG
* * * *
2022980 CCTCAAATGAGACAAATATGGATTCT-AGTAA
127 CCTTAAATAAGACAAACATGGATTCTCA-TAC
* * ** * * * * * * *
2023011 TGATCTTCATTCATTTT-GTGATTAGGCACTATAAACACATTCTCCTCATTGGGAGAAATGATAT
1 TAATCTCCATTC-TTTTCAAGATTTGGCACCATAAACACATTCTTCTCATTAGGATAGATGAAAT
* * ** * * * * * * *
2023075 AGATGGTTTTCCTTTGTATGAAAATCTTTTCTTTGC-CCTATTTTCCTTA-AAATCATAGTTCA-
65 TGAT-GCTTTGGTTCGCAAGAAAAGCTTTTC-TTGCAACTATTTT--TAATAAATCAAAGTT-AG
* * * * * *
2023137 TCCCATAAATAAGGCAAGCATTGATTCTTATAAC
125 TGCCTTAAATAAGACAAACATGGATTCTCAT-AC
* * * * * *
2023171 -AGTCTCCATTCTATTCAACA-TTGAGAACCATAAACACATTCCTT-TCATTAGGATACATGACA
1 TAATCTCCATTCTTTTCAAGATTTG-GCACCATAAACACATT-CTTCTCATTAGGATAGATGAAA
* * * *
2023233 TTGATGCTTTGGTGTCACAACAAAAGCTTTTCTTGCAACTGTTTTTAATAGAATCAAAGTTAGTT
64 TTGATGCTTTGGT-TCGCAAGAAAAGCTTTTCTTGCAACTATTTTTAATA-AATCAAAGTTAGTG
* * * *
2023298 TCTTAAATAAGACAAACTTGAATACTCATAC
127 CCTTAAATAAGACAAACATGGATTCTCATAC
* * * * **
2023329 TAATCCCCATTCTTTTCAGGATTTGGCACCATAAACATAGTCTTCTCATTAGGATAGACAAAATT
1 TAATCTCCATTCTTTTCAAGATTTGGCACCATAAACACATTCTTCTCATTAGGATAGATGAAATT
* * * ** * *
2023394 GATGCTTTGGATTCGCAAG-AAAGAC-TTTCTTGCCACCAATTATTGCTAAGTCTAAGTTCA-TG
66 GATGCTTTGG-TTCGCAAGAAAAG-CTTTTCTTG-CAACTATTTTTAATAAATCAAAGTT-AGTG
* * *
2023456 CCTCAAATGAGACAAACATGGATTCT-AGTAA
127 CCTTAAATAAGACAAACATGGATTCTCA-TAC
* * *** * * * * *
2023487 TGATCTTCATT-TATTTTGTG-TTTAGGCACTATAAACACATTCTCCTCATTAGGAGAAATGATA
1 TAATCTCCATTCT-TTTCAAGATTT-GGCACCATAAACACATTCTTCTCATTAGGATAGATGAAA
* * ** *** * * * **
2023550 TAGATGGTTTTCCTTTATATGAAAATCTTTCCTTTGC--CTATTTTCCTAA-AAATCGTAGTTCA
64 TTGAT-GCTTTGGTTCGCAAGAAAAGCTTTTC-TTGCAACTATTTT--TAATAAATCAAAGTT-A
* * * *
2023612 -TGCCATAAATAAGGCAAGCATTGATTCTCATAAC
124 GTGCCTTAAATAAGACAAACATGGATTCTCAT-AC
* * * * * *
2023646 -AGTCTCCACTCTGTTCAAGA-TTGAGAACCATAAACACATTCCTT-TCATTAGGATACATGACA
1 TAATCTCCATTCTTTTCAAGATTTG-GCACCATAAACACATT-CTTCTCATTAGGATAGATGAAA
* * ** * *
2023708 TTGATGCTTTGGTGTCACTAGAAAAAATTTTCTTGCAACTGTTTTTAATAGAATCAAAGTTAGTT
64 TTGATGCTTTGGT-TCGCAAGAAAAGCTTTTCTTGCAACTATTTTTAATA-AATCAAAGTTAGTG
* * * *
2023773 TCTTAAATAAGACAAACTTGAATACTCATAC
127 CCTTAAATAAGACAAACATGGATTCTCATAC
* * * *
2023804 TAATCCCCATTCTTTTCAAGATTTGGCACCATAAACATAGTCTTCTCATTAGGATAG-TCTAAAT
1 TAATCTCCATTCTTTTCAAGATTTGGCACCATAAACACATTCTTCTCATTAGGATAGAT-GAAAT
* *
2023868 TGATGCTTTCGTTTCGCAAGAAAGGCTT
65 TGATGCTTT-GGTTCGCAAGAAAAGCTT
2023896 CTTCCCACCA
Statistics
Matches: 2719, Mismatches: 908, Indels: 520
0.66 0.22 0.13
Matches are distributed among these distances:
152 50 0.02
153 40 0.01
154 13 0.00
155 15 0.01
156 91 0.03
157 218 0.08
158 865 0.32
159 1333 0.49
160 91 0.03
161 3 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (157 bp):
TAATCTCCATTCTTTTCAAGATTTGGCACCATAAACACATTCTTCTCATTAGGATAGATGAAATT
GATGCTTTGGTTCGCAAGAAAAGCTTTTCTTGCAACTATTTTTAATAAATCAAAGTTAGTGCCTT
AAATAAGACAAACATGGATTCTCATAC
Found at i:2028538 original size:949 final size:948
Alignment explanation
Indices: 2026680--2029350 Score: 3772
Period size: 949 Copynumber: 2.8 Consensus size: 948
2026670 ATCACAATCT
* * * *
2026680 TAAAAAGAATGGAGACTGTTATGAGAATCAATGCTTGCTTTATTTAAGGATTGAACTTTGATTTT
1 TAAAAAGAATGGAGACTGTTAAGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTCGATTTT
* *
2026745 ATGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACAATCAATATCATTTATCCTAAT
66 AAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAAT
* * *
2026810 GAGGAGAATGTTTTTATTGTGCCTAATCACCAAACGAATGAAGATTATTACTTGAATCCATGTTT
131 GAGGAGAATGTCTTTATAGTGCCTAATCACCAAATGAATGAAGATTATTACTTGAATCCATGTTT
* *
2026875 GTCTCATTTGAGGTACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAA
196 GTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGATA
* * *
2026940 CCAAAGCATCAATTTAGTCTTTCCTTATGAGAAGACTTTGTTTATGGTGCCAAATCCTGAAAAGA
261 CCAAAGCATCAATTTAGTCTATCCTAATGAGAAGACTATGTTTATGGTGCCAAATCCTGAAAAGA
* * *
2027005 ATGGGGATTAGTATGAGTATTCATCTTTGTCCTATTTAAGAGACAAACTTTGGTTCTA--AAAAA
326 ATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA
* * * *
2027068 CTGGTAGAAGGAAAACCTTTTCCTGCGACACTGAA-GCAACAATGTCATGTATCCTAATGAAGGG
391 -T-GTTGAAGGAAAACCTTTTCTTGCGACAC-CAAGGCATCAATGTCATGTATCCTAATGAAGGG
* *
2027132 AATGTGTTTATGGTTACCAATCTTAAAAAGAATGGAGACTGTTATGAGAATCAATGCTTGCTTTA
453 -ATGTGTTTATGGTTCCCAATCTT-AAAAGAATGGAGACTGTTATGAGAATCAATGCTTGCCTTA
* * **
2027197 TTTAAGGGATGAACTTCGATTTTAAGGAAAAAAAGGAAAAGAGAAGATTTTCATATAAAAGAAAA
516 TTTAAGGGATGAACTTCGATTTTAAGG-AAAATAGGAAAAGAAAAGATTTTCATGCAAAAGAAAA
* * *
2027262 CTATCAATATCATTTATCCTAATGTGGAGAATGTGTTTATAGTGCCCAATTACCAAATGAATGAA
580 CCATCAATATCATTTATCCTAATATGGAGAATGTGTTTATAGTGCCTAATTACCAAATGAATGAA
*
2027327 GATCATTACTAGAATCCATGTTTATCTCATTTGAGGTACGAACTTAGACTTTACAAAAATTGGTG
645 GATCATTACTAGAATCCATGTTTGTCTCATTTGAGGTACGAACTTAGACTTTACAAAAATTGGTG
* * * * * *
2027392 AGAAGAAAGCCTTTGTTGCGATACCAAAGTATCAATTTCA-TCTATCCTAATTAGAAGACTATGT
710 AGAAGAAAGCCTTTCTTGCAAAACAAAAGCATCAATTT-AGTCTATCCTAATAAGAAGACTATGT
* * * *
2027456 TTATGGTGCCAAATCCTGAAAAGAATGGGGACTAGTATGACTATTCATGTTTGTCTTATTTAAGA
774 TTATGGTGCCAAATCCTGAAAAGAATGGGGACTAGTATGACAAGTCATGTCTGTCTTAATTAAGA
* * * *
2027521 GACAAACTTTGATTCTATCAAAAATGATGGAAGGAAAACCTTTTCTTGCGACACCATAGCATCAA
839 GACAAACTTTGATTCTATCAAAAACGATGGAAGGAAAACCATTTCTTGCGACACCAAAGCACCAA
*
2027586 TGTCATGTATCCTAACGAAGGGAATGTG-TTTGA-TTCCCGAA-AC
904 TGTCATGTATCCTAACGAAAGGAATGTGTTTTGAGTTCCC-AATAC
* * * *
2027629 -AGAAATAATTGGATACTGTTAAGAGAATCAATTCTTGCCTTATTTAAGGAATGAACTTCGATTT
1 TAAAAAGAA-TGGAGACTGTTAAGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTCGATTT
* *
2027693 TAAGGAAAATAGGGCAAAGAAAAGATTTTGATGCAAAAGAAAACCATAAATATCATTTATCCTAA
65 TAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAA
* ** ** *
2027758 TGAGGAGAACGAGTTTGGAGTGCCTAATCACCAAATGAATGAAGATTATTACTTGAATCAATGTT
130 TGAGGAGAATGTCTTTATAGTGCCTAATCACCAAATGAATGAAGATTATTACTTGAATCCATGTT
* * *
2027823 TGTCTCATTTGAGGCACGAACGTAGACTTTACAAAAATTGGTGCGAAGAAAGCCTTTCTTGTGAT
195 TGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAT
*
2027888 ACCAAAGCATCAATTTAGTCAATCCTAATGAGAAGACTATGTTTATGGTGCCAAATCCTGAAAAG
260 ACCAAAGCATCAATTTAGTCTATCCTAATGAGAAGACTATGTTTATGGTGCCAAATCCTGAAAAG
* * * * *
2027953 AATAGGGATTGGTATCAGTATTCATGTTTGTCTTATTTAAGAAACAAACTTTGATTCTATCACAA
325 AATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAA
* * ** *
2028018 ATAGTTGCAGGAAAAGCTTTTCTTGCGACACCAAGGCATTGATGTCGTGTAT-CTAAATGAAAGG
390 AT-GTTGAAGGAAAACCTTTTCTTGCGACACCAAGGCATCAATGTCATGTATCCT-AATG-AAGG
2028082 GATGTGTTTATGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCAATGCTTGCCTTA
452 GATGTGTTTATGGTTCCCAATCTT-AAAAGAATGGAGACTGTTATGAGAATCAATGCTTGCCTTA
* * * * *
2028147 TTTAAGGGAAGAACTTTGATTTTAAGGAAAATAGGGCAAAGACAAGTTTTTCATGCAAAAGAAAA
516 TTTAAGGGATGAACTTCGATTTTAAGGAAAATA-GGAAAAGAAAAGATTTTCATGCAAAAGAAAA
*
2028212 CCATCAATATCATTTATCCTAATATGGAGAATGTGTTTATAGTGCTTAATTACCAAATGAATGAA
580 CCATCAATATCATTTATCCTAATATGGAGAATGTGTTTATAGTGCCTAATTACCAAATGAATGAA
* * *
2028277 GATCATTACTAGAATCCATGTTTGTCTCATTTGAGCTACGAACTTAGACTTTTCAAAAATTGCTG
645 GATCATTACTAGAATCCATGTTTGTCTCATTTGAGGTACGAACTTAGACTTTACAAAAATTGGTG
* *
2028342 AGAA-AAATCCTTTCTTGCAAAACTAAAGCATCAATTTAGTCTATCCTAATAAGAAGACTATGTT
710 AGAAGAAAGCCTTTCTTGCAAAACAAAAGCATCAATTTAGTCTATCCTAATAAGAAGACTATGTT
* * *
2028406 TATGGTGCCAAATCCTGAAAAGAATGGGGATTAGTATGACAAGTCATGTCTGTCTTAATTAGGTG
775 TATGGTGCCAAATCCTGAAAAGAATGGGGACTAGTATGACAAGTCATGTCTGTCTTAATTAAGAG
* * * *
2028471 ATAAACTTTGATTCTATGAAAAACGGTGGAAGGACAACCATTTCTTGCGACACCAAAGCACCAAT
840 ACAAACTTTGATTCTATCAAAAACGATGGAAGGAAAACCATTTCTTGCGACACCAAAGCACCAAT
* *
2028536 GTCATGTATCCTAACGAAAGGAATGTGTTTTTAGTTCCCAATCC
905 GTCATGTATCCTAACGAAAGGAATGTGTTTTGAGTTCCCAATAC
* * *
2028580 TAAAAAGAATGGAGACTGTTAAGAGAATCAATGCTTGCCTTATTTATGGGATGAACTACGATTTT
1 TAAAAAGAATGGAGACTGTTAAGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTCGATTTT
* * ** * *
2028645 CAGGAAAGTAGGGTGAAGAAAAGATTTTCAAGCAAAAGAAAACCATCAATGTCATTTATCCTAAT
66 AAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAAT
*
2028710 GAGGAGAATGTCTTTATAGTGCCTAATCACCAAATGAATGAAGATTATTACTT-TATCCATGTTT
131 GAGGAGAATGTCTTTATAGTGCCTAATCACCAAATGAATGAAGATTATTACTTGAATCCATGTTT
* *
2028774 GCCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGATA
196 GTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGATA
* *
2028839 CCAAAGCATCAATTTAGTCTATCCTAATGTGAAGACTATGTTTATGGTGCCAAATCCTGTAAAGA
261 CCAAAGCATCAATTTAGTCTATCCTAATGAGAAGACTATGTTTATGGTGCCAAATCCTGAAAAGA
* *
2028904 ATGGGGATTAGTATGACTATTCATGTTTGTCTTAATTAAGAGACAAACTTTGATTCTATCAAAAA
326 ATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA
* ** * * *
2028969 TGGTGAAAGGAAAACCTTTTCTTTTGAC-CCTAGAGCATCAATGTCTTGTATCCTAATGAAGGAA
391 TGTTG-AAGGAAAACCTTTTCTTGCGACACCAAG-GCATCAATGTCATGTATCCTAATGAAGG-G
* * * * *
2029033 ATATGTTT-TTGTTCCCAATCTT-AAAGAAATGGAGATTGTTAAGAGAATCAATGCTTGCCTTTT
453 ATGTGTTTATGGTTCCCAATCTTAAAAG-AATGGAGACTGTTATGAGAATCAATGCTTGCCTTAT
* * * * * *
2029096 TTATGGGATGAACTACAATTTTAAGGAAAATAGGTAAAGAAAACATTTTCATGGAAAAGAAAACC
517 TTAAGGGATGAACTTCGATTTTAAGGAAAATAGGAAAAGAAAAGATTTTCATGCAAAAGAAAACC
* * * * *
2029161 ATCAATATCATTTATCCTAATGA-GTATAATGTGTTTATAGTGCCTAATCACCAAATGAGTGAGG
582 ATCAATATCATTTATCCTAAT-ATGGAGAATGTGTTTATAGTGCCTAATTACCAAATGAATGAAG
* * * * * * *
2029225 ATTATTACTTGAATTCAAGTTTG-CTTTATTTGAGGTATGCACTTAGACTTTACAAAAATTGGTG
646 ATCATTACTAGAATCCATGTTTGTC-TCATTTGAGGTACGAACTTAGACTTTACAAAAATTGGTG
* * **
2029289 AAAAGAAAGCCTTTCTTGCAATACCAAAAGCATCAATTTAGTCTATCCTAATGTGAAGACTA
710 AGAAGAAAGCCTTTCTTGCAA-AACAAAAGCATCAATTTAGTCTATCCTAATAAGAAGACTA
2029351 CCACATTCTA
Statistics
Matches: 1526, Mismatches: 175, Indels: 42
0.88 0.10 0.02
Matches are distributed among these distances:
946 1 0.00
947 143 0.09
948 83 0.05
949 601 0.39
950 519 0.34
951 173 0.11
952 6 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (948 bp):
TAAAAAGAATGGAGACTGTTAAGAGAATCAATGCTTGCCTTATTTAAGGAATGAACTTCGATTTT
AAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAAT
GAGGAGAATGTCTTTATAGTGCCTAATCACCAAATGAATGAAGATTATTACTTGAATCCATGTTT
GTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGATA
CCAAAGCATCAATTTAGTCTATCCTAATGAGAAGACTATGTTTATGGTGCCAAATCCTGAAAAGA
ATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA
TGTTGAAGGAAAACCTTTTCTTGCGACACCAAGGCATCAATGTCATGTATCCTAATGAAGGGATG
TGTTTATGGTTCCCAATCTTAAAAGAATGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAA
GGGATGAACTTCGATTTTAAGGAAAATAGGAAAAGAAAAGATTTTCATGCAAAAGAAAACCATCA
ATATCATTTATCCTAATATGGAGAATGTGTTTATAGTGCCTAATTACCAAATGAATGAAGATCAT
TACTAGAATCCATGTTTGTCTCATTTGAGGTACGAACTTAGACTTTACAAAAATTGGTGAGAAGA
AAGCCTTTCTTGCAAAACAAAAGCATCAATTTAGTCTATCCTAATAAGAAGACTATGTTTATGGT
GCCAAATCCTGAAAAGAATGGGGACTAGTATGACAAGTCATGTCTGTCTTAATTAAGAGACAAAC
TTTGATTCTATCAAAAACGATGGAAGGAAAACCATTTCTTGCGACACCAAAGCACCAATGTCATG
TATCCTAACGAAAGGAATGTGTTTTGAGTTCCCAATAC
Found at i:2028598 original size:475 final size:476
Alignment explanation
Indices: 2026674--2029350 Score: 3632
Period size: 475 Copynumber: 5.6 Consensus size: 476
2026664 GTTTTCATCA
* *
2026674 CAATCTTAAAAAGAATGGAGACTGTTATGAGAATCAATGCTTGCTTTATTTAA-GGATTGAACTT
1 CAATCTTAAAAAGAATGGAGACTGTTAAGAGAATCAATGCTTGCCTTATTTAAGGGA-TGAACTT
* * *
2026738 TGATTTTATGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACAATCAATATCATTTA
65 CGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTA
* * *
2026803 TCCTAATGAGGAGAATGTTTTTATTGTGCCTAATCACCAAACGAATGAAGATTATTACTTGAATC
130 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACCAAATGAATGAAGATTATTACTTGAATC
* *
2026868 CATGTTTGTCTCATTTGAGGTACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCT
195 CATGTTTGTCTCATTTGAGCTACGAACTTAGACTTTACAAAAATTGGTGAGAAGAAAGCCTTTCT
* * *
2026933 TGCGAAACCAAAGCATCAATTTAGTCTTTCCTTATGAGAAGACTTTGTTTATGGTGCCAAATCCT
260 TGCGAAACCAAAGCATCAATTTAGTCTATCCTAATGAGAAGACTATGTTTATGGTGCCAAATCCT
* * * *
2026998 GAAAAGAATGGGGATTAGTATGAGTATTCATCTTTGTCCTATTTAAGAGACAAACTTTGGTTCTA
325 GAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
* * ** *
2027063 --AAAAACTGGTAGAAGGAAAACCTTTTCCTGCGACACTGAAGCAACAATGTCATGTATCCTAAT
390 TCAAAAA-TGGTGGAAGGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT
* * * *
2027126 GAAGGGAATGTGTTTATGGTTAC
454 GAAAGGAATGTGTTTTTAGTTCC
* *
2027149 CAATCTTAAAAAGAATGGAGACTGTTATGAGAATCAATGCTTGCTTTATTTAAGGGATGAACTTC
1 CAATCTTAAAAAGAATGGAGACTGTTAAGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTC
* * * * ** *
2027214 GATTTTAAGGAAAAAAAGGAAAAGAGAAGATTTTCATATAAAAGAAAACTATCAATATCATTTAT
66 GATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTAT
* * * * *
2027279 CCTAATGTGGAGAATGTGTTTATAGTGCCCAATTACCAAATGAATGAAGATCATTACTAGAATCC
131 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACCAAATGAATGAAGATTATTACTTGAATCC
* * *
2027344 ATGTTTATCTCATTTGAGGTACGAACTTAGACTTTACAAAAATTGGTGAGAAGAAAGCCTTTGTT
196 ATGTTTGTCTCATTTGAGCTACGAACTTAGACTTTACAAAAATTGGTGAGAAGAAAGCCTTTCTT
* * *
2027409 GCGATACCAAAGTATCAATTTCA-TCTATCCTAATTAGAAGACTATGTTTATGGTGCCAAATCCT
261 GCGAAACCAAAGCATCAATTT-AGTCTATCCTAATGAGAAGACTATGTTTATGGTGCCAAATCCT
*
2027473 GAAAAGAATGGGGACTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
325 GAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
* * *
2027538 TCAAAAATGATGGAAGGAAAACCTTTTCTTGCGACACCATAGCATCAATGTCATGTATCCTAACG
390 TCAAAAATGGTGGAAGGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATG
* *
2027603 AAGGGAATGTG-TTTGA-TTCC
455 AAAGGAATGTGTTTTTAGTTCC
* * * * * *
2027623 CGAAAC--AGAAATAATTGGATACTGTTAAGAGAATCAATTCTTGCCTTATTTAAGGAATGAACT
1 C-AATCTTAAAAAGAA-TGGAGACTGTTAAGAGAATCAATGCTTGCCTTATTTAAGGGATGAACT
* *
2027686 TCGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTGATGCAAAAGAAAACCATAAATATCATTT
64 TCGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTT
* * **
2027751 ATCCTAATGAGGAGAACGAGTTTGGAGTGCCTAATCACCAAATGAATGAAGATTATTACTTGAAT
129 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACCAAATGAATGAAGATTATTACTTGAAT
* * *
2027816 CAATGTTTGTCTCATTTGAGGC-ACGAACGTAGACTTTACAAAAATTGGTGCGAAGAAAGCCTTT
194 CCATGTTTGTCTCATTTGA-GCTACGAACTTAGACTTTACAAAAATTGGTGAGAAGAAAGCCTTT
* * *
2027880 CTTGTGATACCAAAGCATCAATTTAGTCAATCCTAATGAGAAGACTATGTTTATGGTGCCAAATC
258 CTTGCGAAACCAAAGCATCAATTTAGTCTATCCTAATGAGAAGACTATGTTTATGGTGCCAAATC
* * * * *
2027945 CTGAAAAGAATAGGGATTGGTATCAGTATTCATGTTTGTCTTATTTAAGAAACAAACTTTGATTC
323 CTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
* * * * * * ** *
2028010 TATCACAAATAGTTGCAGGAAAAGCTTTTCTTGCGACACCAAGGCATTGATGTCGTGTAT-CTAA
388 TATCAAAAATGGTGGAAGGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT-A
* * *
2028074 ATGAAAGGGATGTGTTTATGGTTCC
452 ATGAAAGGAATGTGTTTTTAGTTCC
* * * *
2028099 CAATCTTGAAAAGAATGGAGACTGTTATGAGAATCAATGCTTGCCTTATTTAAGGGAAGAACTTT
1 CAATCTTAAAAAGAATGGAGACTGTTAAGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTC
* *
2028164 GATTTTAAGGAAAATAGGGCAAAGACAAGTTTTTCATGCAAAAGAAAACCATCAATATCATTTAT
66 GATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTAT
* * * *
2028229 CCTAAT-ATGGAGAATGTGTTTATAGTGCTTAATTACCAAATGAATGAAGATCATTACTAGAATC
131 CCTAATGA-GGAGAATGTGTTTATAGTGCCTAATCACCAAATGAATGAAGATTATTACTTGAATC
* * *
2028293 CATGTTTGTCTCATTTGAGCTACGAACTTAGACTTTTCAAAAATTGCTGAGAA-AAATCCTTTCT
195 CATGTTTGTCTCATTTGAGCTACGAACTTAGACTTTACAAAAATTGGTGAGAAGAAAGCCTTTCT
* * *
2028357 TGCAAAACTAAAGCATCAATTTAGTCTATCCTAATAAGAAGACTATGTTTATGGTGCCAAATCCT
260 TGCGAAACCAAAGCATCAATTTAGTCTATCCTAATGAGAAGACTATGTTTATGGTGCCAAATCCT
* * * * * * *
2028422 GAAAAGAATGGGGATTAGTATGACAAGTCATGTCTGTCTTAATTAGGTGATAAACTTTGATTCTA
325 GAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
* * * * * *
2028487 TGAAAAACGGTGGAAGGACAACCATTTCTTGCGACACCAAAGCACCAATGTCATGTATCCTAACG
390 TCAAAAATGGTGGAAGGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATG
2028552 AAAGGAATGTGTTTTTAGTTCC
455 AAAGGAATGTGTTTTTAGTTCC
* * *
2028574 CAATCCTAAAAAGAATGGAGACTGTTAAGAGAATCAATGCTTGCCTTATTTATGGGATGAACTAC
1 CAATCTTAAAAAGAATGGAGACTGTTAAGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTC
* * ** * *
2028639 GATTTTCAGGAAAGTAGGGTGAAGAAAAGATTTTCAAGCAAAAGAAAACCATCAATGTCATTTAT
66 GATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTAT
* *
2028704 CCTAATGAGGAGAATGTCTTTATAGTGCCTAATCACCAAATGAATGAAGATTATTACTT-TATCC
131 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACCAAATGAATGAAGATTATTACTTGAATCC
* * *
2028768 ATGTTTGCCTCATTTGAGGC-ATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCT
196 ATGTTTGTCTCATTTGA-GCTACGAACTTAGACTTTACAAAAATTGGTGAGAAGAAAGCCTTTCT
* *
2028832 TGCGATACCAAAGCATCAATTTAGTCTATCCTAATGTGAAGACTATGTTTATGGTGCCAAATCCT
260 TGCGAAACCAAAGCATCAATTTAGTCTATCCTAATGAGAAGACTATGTTTATGGTGCCAAATCCT
* *
2028897 GTAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTAATTAAGAGACAAACTTTGATTCTA
325 GAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
* ** * *
2028962 TCAAAAATGGTGAAAGGAAAACCTTTTCTTTTGAC-CCTAGAGCATCAATGTCTTGTATCCTAAT
390 TCAAAAATGGTGGAAGGAAAACCTTTTCTTGCGACACC-AAAGCATCAATGTCATGTATCCTAAT
*
2029026 G-AAGGAAATATGTTTTT-GTTCC
454 GAAAGG-AATGTGTTTTTAGTTCC
* * * * *
2029048 CAATCTTAAAGA-AATGGAGATTGTTAAGAGAATCAATGCTTGCCTTTTTTATGGGATGAACTAC
1 CAATCTTAAAAAGAATGGAGACTGTTAAGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTC
* * * *
2029112 AATTTTAAGGAAAATA-GGTAAAGAAAACATTTTCATGGAAAAGAAAACCATCAATATCATTTAT
66 GATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTAT
* * * * *
2029176 CCTAATGAGTATAATGTGTTTATAGTGCCTAATCACCAAATGAGTGAGGATTATTACTTGAATTC
131 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACCAAATGAATGAAGATTATTACTTGAATCC
* * * * * *
2029241 AAGTTTG-CTTTATTTGAGGTATGCACTTAGACTTTACAAAAATTGGTGAAAAGAAAGCCTTTCT
196 ATGTTTGTC-TCATTTGAGCTACGAACTTAGACTTTACAAAAATTGGTGAGAAGAAAGCCTTTCT
*
2029305 TGC-AATACCAAAAGCATCAATTTAGTCTATCCTAATGTGAAGACTA
260 TGCGAA-ACC-AAAGCATCAATTTAGTCTATCCTAATGAGAAGACTA
2029351 CCACATTCTA
Statistics
Matches: 1933, Mismatches: 243, Indels: 53
0.87 0.11 0.02
Matches are distributed among these distances:
472 100 0.05
473 135 0.07
474 499 0.26
475 912 0.47
476 277 0.14
477 10 0.01
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (476 bp):
CAATCTTAAAAAGAATGGAGACTGTTAAGAGAATCAATGCTTGCCTTATTTAAGGGATGAACTTC
GATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTAT
CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACCAAATGAATGAAGATTATTACTTGAATCC
ATGTTTGTCTCATTTGAGCTACGAACTTAGACTTTACAAAAATTGGTGAGAAGAAAGCCTTTCTT
GCGAAACCAAAGCATCAATTTAGTCTATCCTAATGAGAAGACTATGTTTATGGTGCCAAATCCTG
AAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
CAAAAATGGTGGAAGGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGA
AAGGAATGTGTTTTTAGTTCC
Found at i:2032381 original size:42 final size:42
Alignment explanation
Indices: 2032326--2032444 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
2032316 TTCTTCTCTC
* *
2032326 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
2032368 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
2032410 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
2032445 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:2032385 original size:12 final size:11
Alignment explanation
Indices: 2032359--2032434 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
2032349 TCTATTATCT
*
2032359 CTCCTGTCTCTC
1 CTCCTATCTC-C
2032371 CTCCTATCATCC
1 CTCCTATC-TCC
2032383 CTCCTATCT--
1 CTCCTATCTCC
*
2032392 CTACTATCT--
1 CTCCTATCTCC
*
2032401 CTCCTGTCTCTC
1 CTCCTATCTC-C
2032413 CTCCTATCATCC
1 CTCCTATC-TCC
*
2032425 CTCCTCTCTC
1 CTCCTATCTC
2032435 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:2032386 original size:24 final size:24
Alignment explanation
Indices: 2032350--2032435 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
2032340 CCTCCTCTCT
* *
2032350 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
2032374 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
2032395 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
2032416 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
2032436 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:2032410 original size:18 final size:18
Alignment explanation
Indices: 2032341--2032411 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
2032331 CCTGTCATCC
* *
2032341 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
2032359 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
2032381 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
2032401 CTCCTGTCTCT
1 CTCCTGTCTCT
2032412 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:2034408 original size:159 final size:160
Alignment explanation
Indices: 2034096--2036785 Score: 518
Period size: 159 Copynumber: 17.0 Consensus size: 160
2034086 TATTCCTTAA
* * * * * ** * * * *
2034096 AATCAAAGTTCATCCCATAAATAAGGCAAGCATTGATTCTCATAACAATCTCCATTCTTTTCAAG
1 AATCAAAGTTCGTCTCTTAAATAAGACAAACATCAATACTCATAATAATCCCCATTCTTTTCAGG
* * * * * * * *
2034161 ATTGGGAACTATAAACACATTCCTT-TCATTAGGATACA-TGACATTGATGCTTTGGTGTCACAA
66 ATTAGGCACCATAAACACAGT-CTTCTCATTAGGATAGACTGAAATTGATGCTTTGGTATCGCAA
** * * **
2034224 GAAAATCATTTCTT-GCAACGGTTTTTGATAG
130 GAAAGGC-TTTCTTCCCACCAATTTTTGATAG
* ** *
2034255 AATCAAAGTTTGTCTCTTAAATAAGGTAAACATCAATACTCATACTAATCCCCATTCTTTTCAGG
1 AATCAAAGTTCGTCTCTTAAATAAGACAAACATCAATACTCATAATAATCCCCATTCTTTTCAGG
* * * *
2034320 ATTTGGCACCATAAACATAGTCTTCTCATTAGGATAGACT-AAATTGATGCTTTGGTTTTGCAAG
66 ATTAGGCACCATAAACACAGTCTTCTCATTAGGATAGACTGAAATTGATGCTTTGGTATCGCAAG
2034384 AAAGGCTTTCTTCCCACCAATTTTTG-TA-
131 AAAGGCTTTCTTCCCACCAATTTTTGATAG
* * * ** * * *
2034412 AAGTCTAAGTTCGT-GCTTAAATGAGACAAACATGGAT--TCAAGGAATAATCTTCC-TTC-ATT
1 AA-TCAAAGTTCGTCTCTTAAATAAGACAAACATCAATACTC-A-TAATAATC-CCCATTCTTTT
* * * * * * * * ** *
2034472 CAGGGATTAGGTACTATAAACACATTCTCCTCATTAGGATA-AATGATATTGAAGGTTTTCTATT
62 CA-GGATTAGGCACCATAAACACAGTCTTCTCATTAGGATAGACTGAAATTGATGCTTTGGTATC
* ** ** * *** *
2034536 GCATGAAAATCTTTTCTTTAC-CCTATTTTCCTTAA
126 GCAAGAAAGGC-TTTCTTCCCACCAATTTTTGATAG
* * * * * * * * * *
2034571 AATCATAGATCATCTCATAAATAAGGCAAGCATCGATTCTCTTAATAATCTCCATT-TTTTC-GA
1 AATCAAAGTTCGTCTCTTAAATAAGACAAACATCAATACTCATAATAATCCCCATTCTTTTCAG-
* * * * ** * *
2034634 GATTAGGGAACAAAAACACATTC-TCTTTGTTAGGATACA-TGACATTGATGCTTTGGTATCGCA
65 GATTAGGCACCATAAACACAGTCTTC-TCATTAGGATAGACTGAAATTGATGCTTTGGTATCGCA
* ***
2034697 AGAAAAGGTTTTCCTT-CCA-TTGTTTTTGATAG
129 AG-AAAGGCTTT-CTTCCCACCAATTTTTGATAG
* * * * *
2034729 AATCAAAGTTTGTCTCTTAATTATGACAAACATGAATACTCA-AACTAATCCCCATTCTTTTAAG
1 AATCAAAGTTCGTCTCTTAAATAAGACAAACATCAATACTCATAA-TAATCCCCATTCTTTTCAG
* * * * *
2034793 GATTTGGCACCATAAACAAAGTCTTCTCTTTAAGATAGACT-AAATTGATGCTTTGGTTTCGCAA
65 GATTAGGCACCATAAACACAGTCTTCTCATTAGGATAGACTGAAATTGATGCTTTGGTATCGCAA
* *
2034857 GAAAGGCGTTCTTCCCACCAACTTTTG-TA-
130 GAAAGGCTTTCTTCCCACCAATTTTTGATAG
* * ** **
2034886 AAGTCTAAA-TTCGTGC-CTCAAATGAGACAAACATGGAT--TCAAGTAATAATCTTCATTCATT
1 AA-TC-AAAGTTCGT-CTCTTAAATAAGACAAACATCAATACTC-A-TAATAATCCCCATTC-TT
* * * * * * * ** *
2034947 TT--GTGATTAGGCACTATAGACACATTCTCCTCATTAGGATA-AATGATATTGATGGTTTTCTT
60 TTCAG-GATTAGGCACCATAAACACAGTCTTCTCATTAGGATAGACTGAAATTGATGCTTTGGTA
* * ** *** * *** *
2035009 TTGCATGAAAATCTTTTCTT-TGTCCTATTTTCCTTAA
124 TCGCAAGAAAGGC-TTTCTTCCCACCAATTTTTGATAG
* * * * * * ** * ** * *
2035046 AATCATAGTTCATCCCATAAATAAGGCAAGCATTGATTCTTTTAATAATCTCCATT-TTTTCAAG
1 AATCAAAGTTCGTCTCTTAAATAAGACAAACATCAATACTCATAATAATCCCCATTCTTTTCAGG
* * * * * * * * * *
2035110 ATTGGGGA-CAAAAACACATTC-CCTTCATTAGGATACA-AGACATTGATGCTTGGGTGTCGCAA
66 ATTAGGCACCATAAACACAGTCTTC-TCATTAGGATAGACTGAAATTGATGCTTTGGTATCGCAA
* *
2035172 GAAATGGTTTTC-CCTCCACC-ATTTTTGATAG
130 GAAA-GGCTTTCTTC-CCACCAATTTTTGATAG
*** * * ** * * *
2035203 AATCAAAGTTTACCTCCTAATTAAGACAAACATGTATAGTCATACTAATCCCCATTCTTTTCTGG
1 AATCAAAGTTCGTCTCTTAAATAAGACAAACATCAATACTCATAATAATCCCCATTCTTTTCAGG
* * * *
2035268 ATTTA-GCACCATAAACATC-GGCTTCTCATTAGGACAAAC-AAAATTGATGCTTTGG-ATTCGC
66 A-TTAGGCACCATAAACA-CAGTCTTCTCATTAGGATAGACTGAAATTGATGCTTTGGTA-TCGC
* * *
2035329 AAGAAAGACTTTCTTGCCACCAATTTTTGCTA-
128 AAGAAAGGCTTTCTTCCCACCAATTTTTGATAG
* * * ** * * ** * * **
2035361 AGTCTAAGTTCATGC-CTCGAATGAGACAAAAATGGATTCT-AGTAATGATCTTCATTCATTTT-
1 AATCAAAGTTCGT-CTCTTAAATAAGACAAACATCAATACTCA-TAATAATCCCCATTC-TTTTC
* * * * * * * ** *
2035423 -GTGATTAGGCACTATAAACACATTCTCCTCATTA-GA-AGAAATGATATAGATGGTTTTCTTTC
63 AG-GATTAGGCACCATAAACACAGTCTTCTCATTAGGATAG-ACTGAAATTGATGCTTTGGTATC
* ** ** * *** *
2035485 GTC-TGAAAATCTTTTCTTTGC-CCTATTTTCCTTAA
126 G-CAAGAAAGGC-TTTCTTCCCACCAATTTTTGATAG
** * * * * * * * * * * *
2035520 AATCGTAGTTCATCCCATAAATAAGGCAAGCATTAATTCTCTTAACAGTCTCCATTCTTTTCAGG
1 AATCAAAGTTCGTCTCTTAAATAAGACAAACATCAATACTCATAATAATCCCCATTCTTTTCAGG
* * * * * * * * * * ** *
2035585 ATT-GGTATCAAAAAACAAATTCCCTT-T-TTTAGGATACA-AGACATTGATGATTTGGGGTTGC
66 ATTAGGCA-CCATAAACACAGT--CTTCTCATTAGGATAGACTGAAATTGATGCTTTGGTATCGC
* * * *
2035646 AAGAAATGCTTTTCTTGCAACC-GTTTTTGATAG
128 AAGAAAGGC-TTTCTTCCCACCAATTTTTGATAG
* * * * *
2035679 AATCAAAGTTTGTCTTTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTAAGG
1 AATCAAAGTTCGTCTCTTAAATAAGACAAACATCAATACTCATAATAATCCCCATTCTTTTCAGG
** ** * * * * * * * * *
2035744 ATTACACACCATAAACTTAGTCTTCTTATAAAGATACA-TCATATTGACT-CTTTAGTTTCGTAA
66 ATTAGGCACCATAAACACAGTCTTCTCATTAGGATAGACTGAAATTGA-TGCTTTGGTATCGCAA
2035807 GAAAGGCTTTCTTCCCACCAATTTTTG-TA-
130 GAAAGGCTTTCTTCCCACCAATTTTTGATAG
** * *** * ** ** *
2035836 AAGTTTAAGTTCGTGC-CTTAAATGAGACAAACAAGGATTCT-AGTAAGGATCTTCATTC-ATT-
1 AA-TCAAAGTTCGT-CTCTTAAATAAGACAAACATCAATACTCA-TAATAATCCCCATTCTTTTC
* * * * * * * ** *
2035897 ATGTGATTAGGCACCGTAAACACATTTTTCTCAATAGG-TCA-AATGATATTGATGGTTTTCTTT
63 A-G-GATTAGGCACCATAAACACAGTCTTCTCATTAGGAT-AGACTGAAATTGATGCTTTGGTAT
* * ** ** * * *** *
2035960 TGCATGAAAATCTTTTCTTTGC-CCTATATTCCTTAA
125 CGCAAGAAAGGC-TTTCTTCCCACCAATTTTTGATAG
* * ** * ** ** ** * * * * *
2035996 AATCGATGTTTATCCCTTAAATAAGGTAAGTATTGATTC-CTGTAAT-AGCCTACGA-TATTTTC
1 AATCAAAGTTCGTCTCTTAAATAAGACAAACATCAATACTC-ATAATAATCC--CCATTCTTTTC
* * * * * * * * ** *
2036058 AGGATTGGGAACCAAAAACAAATTCCTT-TCATTATGATA-CCTGACATTGATGCTTTGGGGTTG
63 AGGATTAGGCACCATAAACACAGT-CTTCTCATTAGGATAGACTGAAATTGATGCTTTGGTATCG
* * * * * *
2036121 CAAGAAAAGCTTTTCTTGCAATC-GTTTTTGACAG
127 CAAGAAAGGC-TTTCTTCCCACCAATTTTTGATAG
* * * * * * * * *
2036155 GATCAAAGTTTGTCTCTTAAATAAGACATACATGAAAATTCATACTGATCCCCATTCTTTTAAGG
1 AATCAAAGTTCGTCTCTTAAATAAGACAAACATCAATACTCATAATAATCCCCATTCTTTTCAGG
* * * * * *
2036220 GTTATGCACCATAAACATAGTCTTCTCATTAGGATAGAC-GAAGTTGATGCTTTGGTTTAGCAAG
66 ATTAGGCACCATAAACACAGTCTTCTCATTAGGATAGACTGAAATTGATGCTTTGGTATCGCAAG
2036284 AAAGGCTTTCTTCCCACCAATTTTTG-TA-
131 AAAGGCTTTCTTCCCACCAATTTTTGATAG
* * * * * ** * **
2036312 AAGTCTTAAGTTCTTGC-CTCAAGTTAGACAAACAAGAAT--TGCGGTAATAATCTACATTCATT
1 AA-TC-AAAGTTCGT-CTCTTAAATAAGACAAACATCAATACT-C-ATAATAATCCCCATTC-TT
* * * * * * ** * * ** *
2036374 TT--GTGATTAGGCACTAAAAACCCATTCTCCTCATTAGTATA-AAAGATATTGATGGTTTTCTT
60 TTCAG-GATTAGGCACCATAAACACAGTCTTCTCATTAGGATAGACTGAAATTGATGCTTTGGTA
* * * *** * *** *
2036436 TTGCATGGAAA-TCTTTTCTT-TGTCCTATTTTCCTTAA
124 TCGCA-AGAAAGGC-TTTCTTCCCACCAATTTTTGATAG
** * * * * * ** * * * * * *
2036473 AATTGAAGTTCTTCCCATAAATAAGGCAAGCATTGATTCTCTTGATAGTCTCCATTCTTTTCAAG
1 AATCAAAGTTCGTCTCTTAAATAAGACAAACATCAATACTCATAATAATCCCCATTCTTTTCAGG
* * * * ** * * * * *
2036538 ATTTGGAACCAAAAACACAATCCTT-TTGTTAGGATACA-TCACATTCATGCTTTGG-AGTCACA
66 ATTAGGCACCATAAACACAGT-CTTCTCATTAGGATAGACTGAAATTGATGCTTTGGTA-TCGCA
* *
2036600 AGAAAAGGTTTTCCTT-CCACC-GTTTTTGATAG
129 AG-AAAGGCTTT-CTTCCCACCAATTTTTGATAG
* * * * * * *
2036632 AATCAAAGTTTGTCTTTTAATTAAGACAAACATGAATACTCATACTAATCCCAATTCTTTTAAGG
1 AATCAAAGTTCGTCTCTTAAATAAGACAAACATCAATACTCATAATAATCCCCATTCTTTTCAGG
* ** * * * * *
2036697 GTTACACACCATAAACATAGTCTTCACATTAGGATAGAC-AAAATTGATGCTTTAGTTTCGCAAG
66 ATTAGGCACCATAAACACAGTCTTCTCATTAGGATAGACTGAAATTGATGCTTTGGTATCGCAAG
*
2036761 AAATGCTTTCTTCCCACCAATTTTT
131 AAAGGCTTTCTTCCCACCAATTTTT
2036786 TTAAAGTCTA
Statistics
Matches: 1768, Mismatches: 618, Indels: 290
0.66 0.23 0.11
Matches are distributed among these distances:
155 2 0.00
156 13 0.01
157 223 0.13
158 512 0.29
159 948 0.54
160 60 0.03
161 10 0.01
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (160 bp):
AATCAAAGTTCGTCTCTTAAATAAGACAAACATCAATACTCATAATAATCCCCATTCTTTTCAGG
ATTAGGCACCATAAACACAGTCTTCTCATTAGGATAGACTGAAATTGATGCTTTGGTATCGCAAG
AAAGGCTTTCTTCCCACCAATTTTTGATAG
Found at i:2035123 original size:474 final size:473
Alignment explanation
Indices: 2034056--2037148 Score: 3975
Period size: 476 Copynumber: 6.5 Consensus size: 473
2034046 GTTTTCATCA
* *
2034056 CTTTTGCATGAAAATCTTTTCTTTGCCCTATATTCCTTAAAATCAAAGTTCATCCCATAAATAAG
1 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCATAGTTCATCCCATAAATAAG
* * *
2034121 GCAAGCATTGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGAACTATAAACACATTCCTT
66 GCAAGCATTGATTCTCTTAATAATCTCCATT-TTTTCAAGATTGGGAAC-AAAAACACATTCCTT
* * * *
2034186 TCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAATCATTTCTTGCAACGGTTTTTG
129 T-ATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTGCAACCGTTTTTG
** *
2034251 ATAGAATCAAAGTTTGTCTCTTAAATAAGGTAAACATCAATACTCATACTAATCCCCATTCTTTT
193 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTT
* * *
2034316 CAGGATTTGGCACCATAAACATAGTCTTCTCATTAGGATAGACTAAATTGATGCTTTGGTTTTGC
258 AAGGATTTCGCACCATAAACATAGTCTTCTCATTAGGATAGACTAAATTGATGCTTTGGTTTCGC
*
2034381 AAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTG-CTTAAATGAGACAAACAT
323 AAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAT
* * ** * *
2034445 GGATTCAAGGAATAATCTTCCTTCATTCAGGGATTAGGTACTATAAACACATTCTCCTCATTAGG
388 GGATTCAAGTAATAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGG
*
2034510 ATAAATGATATTGAAGGTTTT
453 ATAAATGATATTGATGGTTTT
* * * *
2034531 CTATTGCATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCATAGATCATCTCATAAATAAG
1 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCATAGTTCATCCCATAAATAAG
* *
2034596 GCAAGCATCGATTCTCTTAATAATCTCCATTTTTTCGAGATTAGGGAACAAAAACACATTCTCTT
66 GCAAGCATTGATTCTCTTAATAATCTCCATTTTTTCAAGATT-GGGAACAAAAACACATTC-CTT
* * * * **
2034661 TGTTAGGATACATGACATTGATGCTTTGGTATCGCAAGAAAAGGTTTTCCTT-CCATTGTTTTTG
129 TATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTT-CTTGCAACCGTTTTTG
* * *
2034725 ATAGAATCAAAGTTTGTCTCTTAATTATGACAAACATGAATACTCAAACTAATCCCCATTCTTTT
193 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTT
* * * *
2034790 AAGGATTTGGCACCATAAACAAAGTCTTCTCTTTAAGATAGACTAAATTGATGCTTTGGTTTCGC
258 AAGGATTTCGCACCATAAACATAGTCTTCTCATTAGGATAGACTAAATTGATGCTTTGGTTTCGC
* * *
2034855 AAGAAAGGCGTTCTTCCCACCAACTTTTGTAAAGTCTAAATTCGTGCCTCAAATGAGACAAACAT
323 AAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAT
*
2034920 GGATTCAAGTAATAATCTTCATTCATTTTGTGATTAGGCACTATAGACACATTCTCCTCATTAGG
388 GGATTCAAGTAATAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGG
2034985 ATAAATGATATTGATGGTTTT
453 ATAAATGATATTGATGGTTTT
*
2035006 CTTTTGCATGAAAATCTTTTCTTTGTCCTATTTTCCTTAAAATCATAGTTCATCCCATAAATAAG
1 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCATAGTTCATCCCATAAATAAG
* * *
2035071 GCAAGCATTGATTCTTTTAATAATCTCCATTTTTTCAAGATTGGGGACAAAAACACATTCCCTTC
66 GCAAGCATTGATTCTCTTAATAATCTCCATTTTTTCAAGATTGGGAACAAAAACACATT-CCTTT
* * * * * * *
2035136 ATTAGGATACAAGACATTGATGCTTGGGTGTCGCAAGAAATGGTTTTCCCT-CCACCATTTTTGA
130 ATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTT-CTTGCAACCGTTTTTGA
** * * * * *
2035200 TAGAATCAAAGTTTACCTCCTAATTAAGACAAACATGTATAGTCATACTAATCCCCATTCTTTTC
194 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTA
* * * * * * * *
2035265 TGGATTTAGCACCATAAACATCGGCTTCTCATTAGGACAAACAAAATTGATGCTTTGGATTCGCA
259 AGGATTTCGCACCATAAACATAGTCTTCTCATTAGGATAGACTAAATTGATGCTTTGGTTTCGCA
* * * * *
2035330 AGAAAGACTTTCTTGCCACCAATTTTTGCT-AAGTCTAAGTTCATGCCTCGAATGAGACAAAAAT
324 AGAAAGGCTTTCTTCCCACCAATTTTTG-TAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAT
* * *
2035394 GGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGA
388 GGATTCAAGTAATAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGG
* *
2035459 AGAAATGATATAGATGGTTTT
453 ATAAATGATATTGATGGTTTT
* *
2035480 CTTTCGTC-TGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCGTAGTTCATCCCATAAATAA
1 CTTTTG-CATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCATAGTTCATCCCATAAATAA
* * * * * * *
2035544 GGCAAGCATTAATTCTCTTAACAGTCTCCATTCTTTTCAGGATTGGTATCAAAAAACAAATTCCC
65 GGCAAGCATTGATTCTCTTAATAATCTCCATT-TTTTCAAGATTGGGAAC-AAAAACACATT-CC
* * * * * *
2035609 TTTTTTAGGATACAAGACATTGATGATTTGGGGTTGCAAGAAATGCTTTTCTTGCAACCGTTTTT
127 TTTATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTGCAACCGTTTTT
*
2035674 GATAGAATCAAAGTTTGTCTTTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTT
192 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTT
* * * * * * * * *
2035739 TAAGGATTACACACCATAAACTTAGTCTTCTTATAAAGATACA-TCATATTGACT-CTTTAGTTT
257 TAAGGATTTCGCACCATAAACATAGTCTTCTCATTAGGATAGACT-AAATTGA-TGCTTTGGTTT
* * *
2035802 CGTAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTTTAAGTTCGTGCCTTAAATGAGACAAA
320 CGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAA
* * ** * ** * * *
2035867 CAAGGATTCTAGTAAGGATCTTCATTCATTATGTGATTAGGCACCGTAAACACATTTTTCTCAAT
385 CATGGATTCAAGTAATAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATT
2035932 AGG-TCAAATGATATTGATGGTTTT
450 AGGAT-AAATGATATTGATGGTTTT
* * *
2035956 CTTTTGCATGAAAATCTTTTCTTTGCCCTATATTCCTTAAAATCGAT-GTTTATCCCTTAAATAA
1 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC-ATAGTTCATCCCATAAATAA
* * ** * * * *
2036020 GGTAAGTATTGATTC-CTGTAATAGCCTACGATATTTTCAGGATTGGGAACCAAAAACAAATTCC
65 GGCAAGCATTGATTCTCT-TAATAATCT-CCATTTTTTCAAGATTGGGAA-CAAAAACACATTCC
* * * * *
2036084 TTTCATTATGATACCTGACATTGATGCTTTGGGGTTGCAAGAAAAGCTTTTCTTGCAATCGTTTT
127 TTT-ATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTGCAACCGTTTT
* * * * * *
2036149 TGACAGGATCAAAGTTTGTCTCTTAAATAAGACATACATGAAAATTCATACTGATCCCCATTCTT
191 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTT
* * *
2036214 TTAAGGGTTAT-GCACCATAAACATAGTCTTCTCATTAGGATAGACGAAGTTGATGCTTTGGTTT
256 TTAAGGATT-TCGCACCATAAACATAGTCTTCTCATTAGGATAGACTAAATTGATGCTTTGGTTT
* * * *
2036278 AGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTTAAGTTCTTGCCTCAAGTTAGACAA
320 CGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTC-TAAGTTCGTGCCTCAAATGAGACAA
* * * * * *
2036343 ACAAGAATTGC-GGTAATAATCTACATTCATTTTGTGATTAGGCACTAAAAACCCATTCTCCTCA
384 ACATGGATT-CAAGTAATAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCA
* *
2036407 TTAGTATAAAAGATATTGATGGTTTT
448 TTAGGATAAATGATATTGATGGTTTT
* * * *
2036433 CTTTTGCATGGAAATCTTTTCTTTGTCCTATTTTCCTTAAAATTGA-AGTTCTTCCCATAAATAA
1 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAA-TCATAGTTCATCCCATAAATAA
* * * *
2036497 GGCAAGCATTGATTCTCTTGATAGTCTCCATTCTTTTCAAGATTTGGAACCAAAAACACAATCCT
65 GGCAAGCATTGATTCTCTTAATAATCTCCATT-TTTTCAAGATTGGGAA-CAAAAACACATTCC-
* * * * * * *
2036562 TTTGTTAGGATACATCACATTCATGCTTTGGAGTCACAAGAAAAGGTTTTCCTT-CCACCGTTTT
127 TTTATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTT-CTTGCAACCGTTTT
* * *
2036626 TGATAGAATCAAAGTTTGTCTTTTAATTAAGACAAACATGAATACTCATACTAATCCCAATTCTT
191 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTT
* * * * * *
2036691 TTAAGGGTTACACACCATAAACATAGTCTTCACATTAGGATAGACAAAATTGATGCTTTAGTTTC
256 TTAAGGATTTCGCACCATAAACATAGTCTTCTCATTAGGATAGACTAAATTGATGCTTTGGTTTC
* *
2036756 GCAAGAAATGCTTTCTTCCCACCAATTTTTTTAAAGTCTAAGTTCGTGCCTCAAGA-GAGACAAA
321 GCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAA-ATGAGACAAA
* * * * *
2036820 CATGGATTCAAGTAAAAATCTTCATTCATTTGGTGATTAGGCGCCATACACACATTCTCCTCATT
385 CATGGATTCAAGTAATAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATT
*
2036885 AGAATAAATGATATTGATGGTTTT
450 AGGATAAATGATATTGATGGTTTT
* * * *
2036909 CTTTTGCATGAAATTCTTTTTTTTACCCTATTTTCCTTAAAATCGTAGTTCATCCCATAAATAAG
1 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCATAGTTCATCCCATAAATAAG
* * * * *
2036974 GCAAGCATTGATTTTCTTAATAATCTCCACTTTTTCAAGATTAGGAACAAAAATACATTCCCTTC
66 GCAAGCATTGATTCTCTTAATAATCTCCATTTTTTCAAGATTGGGAACAAAAACACATT-CCTTT
* * * *
2037039 ATTAAGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTGCAACTGTTTTTGGT
130 ATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTGCAACCGTTTTTGAT
*
2037104 AGAATCAAAGTTTGTCTCTTAAATAAAACAAACATGAATACTCAT
195 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAT
2037149 GTTAAGAGAA
Statistics
Matches: 2268, Mismatches: 312, Indels: 77
0.85 0.12 0.03
Matches are distributed among these distances:
473 3 0.00
474 745 0.33
475 341 0.15
476 774 0.34
477 394 0.17
478 11 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (473 bp):
CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCATAGTTCATCCCATAAATAAG
GCAAGCATTGATTCTCTTAATAATCTCCATTTTTTCAAGATTGGGAACAAAAACACATTCCTTTA
TTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTGCAACCGTTTTTGATA
GAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTAAG
GATTTCGCACCATAAACATAGTCTTCTCATTAGGATAGACTAAATTGATGCTTTGGTTTCGCAAG
AAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
TTCAAGTAATAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATA
AATGATATTGATGGTTTT
Found at i:2040131 original size:159 final size:157
Alignment explanation
Indices: 2037598--2042916 Score: 1712
Period size: 159 Copynumber: 33.6 Consensus size: 157
2037588 ATTCATCCCA
* * * * * * * *
2037598 TAAAT-AAGGCAAGCATTGATTCTCTTAATAATCTCCATT-ATTTCAAGATTGGG-AACAAAAAC
1 TAAATAAAGACAAACATTGATTCTCATAACAATCTCCATTCTTTTTAAGATTGGGCACCATAAAC
* * * * * * * * *
2037660 ACATTCCCTTCATTAGGATACATGACATTGGTGCTTTGGTGTCGCAAGAAATGGTTGTCCTTCCA
66 ACATT-CTTTCATTAGGATAAATGACATTGATGCTTTGGTTTCGCAATAAAAGCTT-TTCTTGCA
* * * ** *
2037725 CCGTTTTTCATAGAATCAAAGTTTATCACC
129 CCATTTTTGATAAAATCAAAGTTCGTC-CT
* * * * * * *
2037755 T-AATTAAGACAGACA-TGACTTGTCAT-ACTAATCCCCATTCTTTTCAGGATTTGGCACCATAA
1 TAAATAAAGACAAACATTGA-TTCTCATAAC-AATCTCCATTCTTTTTAAGATTGGGCACCATAA
* * * * * * * * *
2037817 ACATAGTC-TTCATATTAGGATTGACT-AAATTGGTGCTTTGGTATCGCAAGAAAGGC-TTTCTC
64 ACACATTCTTTC--ATTAGGA-TAAATGACATTGATGCTTTGGTTTCGCAATAAAAGCTTTTCT-
** * * * *
2037879 CCCACCAATTTTTG-TTAAGTCTAAGTTCATGCCT
125 TGCACC-ATTTTTGATAAAATCAAAGTTCGT-CCT
* * * ** * * * *
2037913 CAAAT-GAGACAAACATGGATTCT-AGTAATGATCTTCATTCATTTTGT-A-ATTAGGCACTAAA
1 TAAATAAAGACAAACATTGATTCTCA-TAACAATCTCCATTC-TTTT-TAAGATTGGGCACCATA
* * * * ** * *
2037974 AACACATTCTCCTCATTAAGATAAATGATATTGATGGTTTTCTTTTGC-ATGAAAATCTTTTCTT
63 AACACATTCT-TTCATTAGGATAAATGACATTGATGCTTTGGTTTCGCAAT-AAAAGCTTTTC-T
** *** * *
2038038 TG--CCATATTTTCCTTAAAATTGTAGTTCATCCCA
125 TGCACCAT-TTTT-GATAAAATCAAAGTTCGT-CCT
* * * * * * *
2038072 TAAAT-AAGGCAAGCATTGATTCTCTTAATAATCTCCATT-TTTTCAAGATTGGG-AACAAAAAC
1 TAAATAAAGACAAACATTGATTCTCATAACAATCTCCATTCTTTTTAAGATTGGGCACCATAAAC
* * * * * * * * *
2038134 ACATTCCCTTCGTTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAAAAGGTTGTCCTTCCA
66 ACATT-CTTTCATTAGGATAAATGACATTGATGCTTTGGTTTCGCAATAAAAGCTT-TTCTTGCA
** **
2038199 CTGTTTTTGAT--AATCAAAGTTTATCTCT
129 CCATTTTTGATAAAATCAAAGTTCGTC-CT
* ** * * * * *
2038227 TAAAT-AAGACAGACA-TGAATAGTCAT-TCTAATCCCCATTCTTTTCAAGATTTGGCACTATAA
1 TAAATAAAGACAAACATTG-ATTCTCATAAC-AATCTCCATTCTTTTTAAGATTGGGCACCATAA
* * * * * * *
2038289 ACATAGTCTTCTTATTAGGATAGACT-AAATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTCTTC
64 ACACATTCTT-TCATTAGGATA-AATGACATTGATGCTTTGGTTTCGCAATAAAAGCTTTTCTT-
* * * * * * *
2038352 TCAGCAATTTCTG-TAAAGTCTAAGTTCATAGCT
126 GCA-CCATTTTTGATAAAATCAAAGTTCGT-CCT
* * * ** * * * * * *
2038385 CAAAT-GAGACAAACATGGATTCT-AGTAATGATATTCATTC--ATTAGGTAATTAGGCACTATA
1 TAAATAAAGACAAACATTGATTCTCA-TAACAATCTCCATTCTTTTTAAG--ATTGGGCACCATA
*** * * ** * *
2038446 AACACATTCACCACATTAGGATAAATGATATTTATGCTTTTCTTTTGC-ATCAAAATCTTTTCTT
63 AACACATTC-TTTCATTAGGATAAATGACATTGATGCTTTGGTTTCGCAAT-AAAAGCTTTTC-T
*** * * *
2038510 TGC-CCTATTTTCCTTAAAATCGAAGTACATCCCT
125 TGCACC-ATTTTTGATAAAATCAAAGTTCGT-CCT
* * * * ** *
2038544 TAAAT-AAGGCAAGA-ATTGATTCTCTTAACAGTCTCTATT-TATTTT-ATTTTCGAG-A--ATC
1 TAAATAAAGACAA-ACATTGATTCTCATAACAATCTCCATTCT-TTTTAAGATT-GGGCACCAT-
* * * * * * * * *
2038602 AAACACTTTCTGTTCGTTAGGATACATGACATTAACGCTTTGGTGTCACAAGAAAAGGTTTTCCT
62 AAACACATTCT-TTCATTAGGATAAATGACATTGATGCTTTGGTTTCGCAATAAAAGCTTTT-CT
* * * *
2038667 TCCACAATTTTTGATAGAATCAAAGTTTGTCTCT
125 TGCACCATTTTTGATAAAATCAAAGTTCGTC-CT
** ** * * * * * *
2038701 TAAAT-AAGACAAACATAAATAGTCAT-ACTAGTCCCCATTCTTTTCAGGATTTGGCACTATAAA
1 TAAATAAAGACAAACATTGATTCTCATAAC-AATCTCCATTCTTTTTAAGATTGGGCACCATAAA
* * * * * * * * * * *
2038764 AATAGTCTTCACATTAGGATAGACT-AAATTGTTGCTTTGGTATCGCAAGAAAGGC-TTTCTTCC
65 CACATTCTT-TCATTAGGATA-AATGACATTGATGCTTTGGTTTCGCAATAAAAGCTTTTCTT-G
* *
2038827 CACCAATTTTTG-TAAAGTCTAAGTTCGTACCT
127 CACC-ATTTTTGATAAAATCAAAGTTCGT-CCT
* * * * * * * *** * *
2038859 CAAAT-GAGACAAACATGGATTC-AAGTAATAATCTTCATTCATTTGGTGATTAGGCACTATAAA
1 TAAATAAAGACAAACATTGATTCTCA-TAACAATCTCCATTCTTTTTAAGATTGGGCACCATAAA
* * * * ** * *
2038922 CACATTCTCCTCATTAGAATAAATGATATTGATGGTTTTCTTTTGC-ATGAAAATCTTTTCTTTG
65 CACATTCT-TTCATTAGGATAAATGACATTGATGCTTTGGTTTCGCAAT-AAAAGCTTTTC-TTG
*** * *
2038986 C-CCTATTTTCCTTAAAATCGAAGTTCATCCTT
127 CACC-ATTTTTGATAAAATCAAAGTTCGTCC-T
* * * * * *
2039018 TAAAT-AAGGCAAACACTGATTCTC-TCAACAGTCTCCATTCTTTTTAGGATTGGGAACCAAAAA
1 TAAATAAAGACAAACATTGATTCTCAT-AACAATCTCCATTCTTTTTAAGATTGGGCACCATAAA
* * * ** * *
2039081 CACATTCCCTTT-GTTAGGATACATGACATTGATGCTATGGCGTCGCAAGAAAAGGTTTTCCTT-
65 CACATT--CTTTCATTAGGATAAATGACATTGATGCTTTGGTTTCGCAATAAAAGCTTTT-CTTG
* * *
2039144 CTACCACTTTTGATAGAATCAAAGTTTGTCCCT
127 C-ACCATTTTTGATAAAATCAAAGTTCGT-CCT
* ** * * * * *
2039177 TAAAT-AAGACAAA-AATGAATAGTCAT-ACTAGTCCCCATTATTTTAAAGATT-TGCACCATAA
1 TAAATAAAGACAAACATTG-ATTCTCATAAC-AATCTCCATTCTTTTTAAGATTGGGCACCATAA
* * * * * * * *
2039238 ACATAGTCTTCTAATTAGGATAGATGAAATTGATGCTTTGGTTTCGCAACAAAGGC-TTTCTTCT
64 ACACATTCTT-TCATTAGGATAAATGACATTGATGCTTTGGTTTCGCAATAAAAGCTTTTCTT-G
* * * *
2039302 CACCAATGTTTG-TAAAGTCTAAGTTCGTATCT
127 CACC-ATTTTTGATAAAATCAAAGTTCGT-CCT
* * * * * * * * **** * *
2039334 CAAAT-GAGACAAACATGGATTC-AAGTAATAATCTTCACTCATTCGGTGATTAGGCACTATAAA
1 TAAATAAAGACAAACATTGATTCTCA-TAACAATCTCCATTCTTTTTAAGATTGGGCACCATAAA
** * * ** * *
2039397 CACATTCTCCCCATTAGGATAAATAATATTGATTG-TTTTCTTTCGC-ATGAAAATCTTTTTTTT
65 CACATTCT-TTCATTAGGATAAATGACATTGA-TGCTTTGGTTTCGCAAT-AAAAGC-TTTTCTT
** * *
2039460 GC-CCTATTTTCCATAAAATCGAAGTTCATCCCT
126 GCACC-ATTTTTGATAAAATCAAAGTTCGT-CCT
* * *
2039493 TAAATAAAG-CAAGCATTGATTCTCATAACAGTCTCCATTCTTTTTAAGATTGGGAACCATAAAC
1 TAAATAAAGACAAACATTGATTCTCATAACAATCTCCATTCTTTTTAAGATTGGGCACCATAAAC
* * * * * * * * *
2039557 ACATTCCCTTCGTTAGGATACATGACATTGGTGCATTAGTGTCGCAAGAAATG-TTTTCCTT-CT
66 ACATT-CTTTCATTAGGATAAATGACATTGATGCTTTGGTTTCGCAATAAAAGCTTTT-CTTGC-
* * * *
2039620 ACAATTTTT-ATAGAACCAAAGTTTGTCTCT
128 ACCATTTTTGATAAAATCAAAGTTCGTC-CT
* * * * * *
2039650 TAAAT-AGGACAAACA-CGAATACTCAT-ACTAATC-CCTATTCTTTTCAGGATTTGGCACCATA
1 TAAATAAAGACAAACATTG-ATTCTCATAAC-AATCTCC-ATTCTTTTTAAGATTGGGCACCATA
* * *
2039711 AACA-ATGTCTTCTCATTAGGA-AACACT-AAATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTC
63 AACACAT-TCTT-TCATTAGGATAA-A-TGACATTGATGCTTTGGTTTCGCAATAAAAGCTTTTC
* * *
2039772 TTCCCACCAATTTTTG-TAAAGTCTAAGTTCGTGCCT
124 TT-GCACC-ATTTTTGATAAAATCAAAGTTCGT-CCT
* * * * * * * * **** * *
2039808 CAAA-AGAGACAAACATGGATTC-AAGTAATAATCTTCACTCATTCGGTGATTAGGCACTATAAA
1 TAAATAAAGACAAACATTGATTCTCA-TAACAATCTCCATTCTTTTTAAGATTGGGCACCATAAA
** * ** * *
2039871 CACATTCTCCCCATTAGGATAAATGATATTGATTG-TTTTCTTTTGC-ATGAAAATCTTTTCTTT
65 CACATTCT-TTCATTAGGATAAATGACATTGA-TGCTTTGGTTTCGCAAT-AAAAGCTTTTC-TT
** * *
2039934 GC-CCTATTTTCCATAAAATCGAAGTTCATCCCT
126 GCACC-ATTTTTGATAAAATCAAAGTTCGT-CCT
* * *
2039967 TAAATAAAG-CAAGCATTGATTCTCATAACAGTCTCCATTCTTTTTAAGATTGGGAACCATAAAC
1 TAAATAAAGACAAACATTGATTCTCATAACAATCTCCATTCTTTTTAAGATTGGGCACCATAAAC
* * *
2040031 ACATTCCTTTCATTAGGATATAGGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTGCAA
66 ACATT-CTTTCATTAGGATAAATGACATTGATGCTTTGGTTTCGCAATAAAAGCTTTTCTTGC-A
* *
2040096 CCATTTTTGATAGAATCAAAGTTTGTCTCT
129 CCATTTTTGATAAAATCAAAGTTCGTC-CT
* * * * *
2040126 TAAAT-AAGACAAACA-AGAATACTCAT-ACTAATCCCCATTCTTTTCAAGATTTGGCACCATAA
1 TAAATAAAGACAAACATTG-ATTCTCATAAC-AATCTCCATTCTTTTTAAGATTGGGCACCATAA
* * * * * **
2040188 ACA-TTGTCTTCTCATTAGGATAGACT-AAATTGATGCTTTGGTTTTGCAA-GAAAGGATTTCTT
64 ACACAT-TCTT-TCATTAGGATA-AATGACATTGATGCTTTGGTTTCGCAATAAAAGCTTTTCTT
* * * *
2040250 CCCACCAATTTTCG-TAAAGTCTAAGTTCGTGCCT
126 -GCACC-ATTTTTGATAAAATCAAAGTTCGT-CCT
* * * ** * * * ** *** * *
2040284 CAAAT-GAGACAAACATGGATT-GAAGTAATAATATTCATTAATTTGGGGATTAGGCACTATAAA
1 TAAATAAAGACAAACATTGATTCTCA-TAACAATCTCCATTCTTTTTAAGATTGGGCACCATAAA
* * ** * *
2040347 CACATTCTCCTCATTAGGATAAATGATATTGATTG-TTTTCTTTTGC-ATGAAAATCTTTTCTTT
65 CACATTCT-TTCATTAGGATAAATGACATTGA-TGCTTTGGTTTCGCAAT-AAAAGCTTTTC-TT
* *** * *
2040410 GCCCCATTTTCCTTAAAATCGAAGTTCATTCCT
126 GCACCATTTTTGATAAAATCAAAGTTC-GTCCT
* * * * * *
2040443 TAAAT-AAGGCAAGCGTTGATTCTTATAACAGTCTCCATTCTTTTTAAGATTGGGAACCATAAAC
1 TAAATAAAGACAAACATTGATTCTCATAACAATCTCCATTCTTTTTAAGATTGGGCACCATAAAC
* * * * * *
2040507 ACATTACTTTCATTAAGATACATGACAATGATGCTATAGTATCGCAATAAAAGCTTTTCTTGCAA
66 ACATT-CTTTCATTAGGATAAATGACATTGATGCTTTGGTTTCGCAATAAAAGCTTTTCTTGC-A
* * *
2040572 CCGTTTTTGATAGAATCAAAGTTTGTCTCT
129 CCATTTTTGATAAAATCAAAGTTCGTC-CT
* *** * * * *
2040602 TAAAT-AAGACAAATAAAAATACTCAT-ACTAATAC-CCATTCTTTTCAGGATTTGGCACCATAA
1 TAAATAAAGACAAACATTGATTCTCATAAC-AAT-CTCCATTCTTTTTAAGATTGGGCACCATAA
* * * * *
2040664 ACAAAGTCTTCTCATTAGGA-AAGACT-AAATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTCTT
64 ACACATTCTT-TCATTAGGATAA-A-TGACATTGATGCTTTGGTTTCGCAATAAAAGCTTTTCTT
* * *
2040726 ACCACCAATTTTTG-TAAAGTCTAAGTTCACG-CCT
126 -GCACC-ATTTTTGATAAAATCAAAGTT--CGTCCT
* * * ** * * * * * *** * *
2040760 CAAAT-GAGTCAAACACGGATTC-AAGTAATAATATTCATTCATTTGGGGATTAGGCACTATAAA
1 TAAATAAAGACAAACATTGATTCTCA-TAACAATCTCCATTCTTTTTAAGATTGGGCACCATAAA
* * * * * ** *
2040823 AATATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCCTTT-GC-ATGAAAATCTTTTCTTT
65 CACATTCT-TTCATTAGGATAAATGACATTGAT-GCTTTGGTTTCGCAAT-AAAAGCTTTTC-TT
* * ** ** *
2040886 GC-CTTAATTTCCATAAAATTGAAGTTCATCCCT
126 GCAC-CATTTTTGATAAAATCAAAGTTCGT-CCT
* * *
2040919 TAAATAAAG-CAAGCATTGATTCTCATAACAGTCTCCATTCTTTTTAAGATTGGGAACCATAAAC
1 TAAATAAAGACAAACATTGATTCTCATAACAATCTCCATTCTTTTTAAGATTGGGCACCATAAAC
* * *
2040983 ACATTCCTTTCATTAGGATATAGGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTGCAA
66 ACATT-CTTTCATTAGGATAAATGACATTGATGCTTTGGTTTCGCAATAAAAGCTTTTCTTGC-A
* *
2041048 CCATTTTTGATAGAATCAAAGTTTGTCTCT
129 CCATTTTTGATAAAATCAAAGTTCGTC-CT
* * * * *
2041078 TAAAT-AAGACAAACA-AGAATACTCAT-ACTAATCCCCATTCTTTTCAAGATTTGGCACCATAA
1 TAAATAAAGACAAACATTG-ATTCTCATAAC-AATCTCCATTCTTTTTAAGATTGGGCACCATAA
* * * * * **
2041140 ACA-TTGTCTTCTCATTAGGATAGACT-AAATTGATGCTTTGGTTTTGCAA-GAAAGGATTTCTT
64 ACACAT-TCTT-TCATTAGGATA-AATGACATTGATGCTTTGGTTTCGCAATAAAAGCTTTTCTT
* * * *
2041202 CCCACCAATTTTCG-TAAAGTCTAAGTTCGTGCCT
126 -GCACC-ATTTTTGATAAAATCAAAGTTCGT-CCT
* * * ** * * * ** *** * *
2041236 CAAAT-GAGACAAACATGGATT-GAAGTAATAATATTCATTAATTTGGGGATTAGGCACTATAAA
1 TAAATAAAGACAAACATTGATTCTCA-TAACAATCTCCATTCTTTTTAAGATTGGGCACCATAAA
* * ** * *
2041299 CACATTCTCCTCATTAGGATAAATGATATTGATTG-TTTTCTTTTGC-ATGAAAATCTTTTCTTT
65 CACATTCT-TTCATTAGGATAAATGACATTGA-TGCTTTGGTTTCGCAAT-AAAAGCTTTTC-TT
* *** * *
2041362 GCCCCATTTTCCTTAAAATCGAAGTTCATTCCT
126 GCACCATTTTTGATAAAATCAAAGTTC-GTCCT
* * * * * *
2041395 TAAAT-AAGGCAAGCATTGATTCTTATAACAGTCTTCATTCTTTTTAAGATTGGGAACCATAAAC
1 TAAATAAAGACAAACATTGATTCTCATAACAATCTCCATTCTTTTTAAGATTGGGCACCATAAAC
* * * * * * *
2041459 ACATTCCTTTCATTAAGATACATGACAATGATGCTATAGTGTCACAATAAAAGCTTTTCTTGCAA
66 ACATT-CTTTCATTAGGATAAATGACATTGATGCTTTGGTTTCGCAATAAAAGCTTTTCTTGC-A
* * *
2041524 CCGTTTTTGATAGAATCAAAGTTTGTCTCT
129 CCATTTTTGATAAAATCAAAGTTCGTC-CT
*** * * * * *
2041554 TAAATAAA-ACAAACAAAAATACTCA-CACTAATAC-CCATTCTTTTCAGGATTTGGCACCATAA
1 TAAATAAAGACAAACATTGATTCTCATAAC-AAT-CTCCATTCTTTTTAAGATTGGGCACCATAA
* * * * * * * **
2041616 ACATAGTCTTCTTATTAGGATAGACT-AAATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTCCC
64 ACACATTCTT-TCATTAGGATA-AATGACATTGATGCTTTGGTTTCGCAATAAAAGC-TTTTCTT
* * *
2041680 GC-CAATTTTTG-TAAAGTCTAAGTTCGTGCCT
126 GCACCATTTTTGATAAAATCAAAGTTCGT-CCT
* * * * * * * * **** * **
2041711 CAAA-AGAGACAAACATGGATTC-AAGTAATAATCTTCACTCATTCGGTGATTAGGCACTGTAAA
1 TAAATAAAGACAAACATTGATTCTCA-TAACAATCTCCATTCTTTTTAAGATTGGGCACCATAAA
* ** * ** *
2041774 CGCATTCTCCCCATTAGGATAAATGATATTGATTG-TTTTCTTTTGC-ATGAAATA-CTTTTCTT
65 CACATTCT-TTCATTAGGATAAATGACATTGA-TGCTTTGGTTTCGCAAT-AAA-AGCTTTTC-T
** * *
2041836 TGC-CCTATTTTCCATAAAATCGAAGTTCATCCCT
125 TGCACC-ATTTTTGATAAAATCAAAGTTCGT-CCT
* * *
2041870 TAAATAAAG-CAAGCATTGATTCTCATAACAGTCTCCATTCTTTTTAAGATTGGGAACCATAAAC
1 TAAATAAAGACAAACATTGATTCTCATAACAATCTCCATTCTTTTTAAGATTGGGCACCATAAAC
* *
2041934 ACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTGCAA
66 ACATT-CTTTCATTAGGATAAATGACATTGATGCTTTGGTTTCGCAATAAAAGCTTTTCTTGC-A
*
2041999 CCATTTTTGATAAAATCAAAGTTTGTCTCT
129 CCATTTTTGATAAAATCAAAGTTCGTC-CT
* * * * *
2042029 TAAATAAA-ACAAACA-TGAATACTCAT-ACTAATCCCCATTCTTTTCAGGATTTGGCACCATAA
1 TAAATAAAGACAAACATTG-ATTCTCATAAC-AATCTCCATTCTTTTTAAGATTGGGCACCATAA
* * * * * *
2042091 ACAAAGTCTTCTCATTAGGA-AAGACT-AAATTGATGCTTTGATTTCGCAAGAAAGGC-TTTCTT
64 ACACATTCTT-TCATTAGGATAA-A-TGACATTGATGCTTTGGTTTCGCAATAAAAGCTTTTCTT
* * * * *
2042153 CCCACCAACTTTTG-TAAAGTCTAAGTTCATGCCT
126 -GCACC-ATTTTTGATAAAATCAAAGTTCGT-CCT
* * * ** * * * * * *** * *
2042187 CAAAT-GAGTCAAACACGGATTC-AAGTAATAATATTCATTCATTTGGGGATTAGGCACTATAAA
1 TAAATAAAGACAAACATTGATTCTCA-TAACAATCTCCATTCTTTTTAAGATTGGGCACCATAAA
* * * * ** *
2042250 -A-ATACTCCTCATTAGGATAAATGATATTGATGGTTTTCCTTT-GC-ATGAAAATCTTTTCTTT
65 CACATTCT-TTCATTAGGATAAATGACATTGAT-GCTTTGGTTTCGCAAT-AAAAGCTTTTC-TT
* * * *
2042311 GC-CTTATTTTTCATAAAATCGAAGTTCATCCCT
126 GCAC-CATTTTTGATAAAATCAAAGTTCGT-CCT
* * * * * *
2042344 TAAAT-AGGGCAAGCATTGATTCTTATAACAGTCTCCATTCTTTTTAAGATTGGGAACCATAAAC
1 TAAATAAAGACAAACATTGATTCTCATAACAATCTCCATTCTTTTTAAGATTGGGCACCATAAAC
* * * * *
2042408 ACATTCCTTTCATTAAGATACATGACAATGATGCTTTAGTGTCGCAATAAAAGCTTTTCTTGCAA
66 ACATT-CTTTCATTAGGATAAATGACATTGATGCTTTGGTTTCGCAATAAAAGCTTTTCTTGC-A
* * *
2042473 CCGTTTGTTGATAGAATCAAAGTTTGTCTCT
129 CCATTT-TTGATAAAATCAAAGTTCGTC-CT
*** * * * * *
2042504 TAAAT-AAGACAAACAAAAATACTCAT-ACTAATCCCCATTCTTTTCAGGATTTGGCACCATAAA
1 TAAATAAAGACAAACATTGATTCTCATAAC-AATCTCCATTCTTTTTAAGATTGGGCACCATAAA
* * * * *
2042567 CA-TTGTCTTCTCATTAGGATAGACT-AAATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTCTTC
65 CACAT-TCTT-TCATTAGGATA-AATGACATTGATGCTTTGGTTTCGCAATAAAAGCTTTTCTT-
* * * * *
2042629 CCACCAAATTTTG-TAAAGTCTAAGTTCATGCCT
126 GCACC-ATTTTTGATAAAATCAAAGTTCGT-CCT
* * * ** * * * * *** * *
2042662 CAAAT-GAGTCAAACACGGATTC-AAGTAATAATATTCATT-TATTTGGGGATTAGGCACTATAA
1 TAAATAAAGACAAACATTGATTCTCA-TAACAATCTCCATTCT-TTTTAAGATTGGGCACCATAA
* * * * * ** *
2042724 AAATATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCCTTT-GC-ATGAAAATCTTTTCTT
64 ACACATTCT-TTCATTAGGATAAATGACATTGAT-GCTTTGGTTTCGCAAT-AAAAGCTTTTC-T
* ** * *
2042787 TGC-CTTATTTTCCATAAAATCGAAGTTCATTCCT
125 TGCAC-CATTTTTGATAAAATCAAAGTTC-GTCCT
* ** *
2042821 TAAATAAAG-CAAGCATTGATTCTCATAACCGTCTCCATTCTTTTTAAGATTGGGAACCATAAAC
1 TAAATAAAGACAAACATTGATTCTCATAACAATCTCCATTCTTTTTAAGATTGGGCACCATAAAC
* * * *
2042885 CCATTCCCTTCGTTAGGATACATGACATTGAT
66 ACATT-CTTTCATTAGGATAAATGACATTGAT
2042917 TGATGAAAAC
Statistics
Matches: 3693, Mismatches: 1137, Indels: 662
0.67 0.21 0.12
Matches are distributed among these distances:
154 3 0.00
155 42 0.01
156 104 0.03
157 575 0.16
158 1092 0.30
159 1662 0.45
160 210 0.06
161 5 0.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (157 bp):
TAAATAAAGACAAACATTGATTCTCATAACAATCTCCATTCTTTTTAAGATTGGGCACCATAAAC
ACATTCTTTCATTAGGATAAATGACATTGATGCTTTGGTTTCGCAATAAAAGCTTTTCTTGCACC
ATTTTTGATAAAATCAAAGTTCGTCCT
Found at i:2040368 original size:476 final size:476
Alignment explanation
Indices: 2037316--2042916 Score: 8138
Period size: 476 Copynumber: 11.8 Consensus size: 476
2037306 GTGCCATAAA
* * * *
2037316 CATTCTTTACAGGATTTGGCACCATAAACATAGTGTTCACATTAGGATAGACTAAATCGATGCTT
1 CATTCTTTTCAGGATTTGGCACCATAAACATAGTCTTCTCATTAGGATAGACTAAATTGATGCTT
* * *
2037381 TGGTGTCGCAAAAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTACGTTCATGCCTCAAATGA
66 TGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGA
* * *
2037446 GGCAAACATGGATACAAGTAATAATCTTCATTCATTTGGTGATTAGGCACTATAAACACATTCTC
131 GACAAACATGGATTCAAGTAATAATATTCATTCATTTGGTGATTAGGCACTATAAACACATTCTC
* * *
2037511 CTCATTAGGATAAATAATATTGA-TGATTTTCTTTTGCTTGAAAATCTTTTCTTTACCCTATTTT
196 CTCATTAGGATAAATGATATTGATTG-TTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTT
* * * * * *
2037575 CCTTAAAATCGTAA-TTCATCCCATAAATAAGGCAAGCATTGATTCTCTTAATAATCTCCATT-A
260 CCATAAAATCG-AAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCT
* * * *
2037638 TTTCAAGATTGGGAA-CAAAAACACATTCCCTTCATTAGGATACATGACATTGGTGCTTTGGTGT
324 TTTTAAGATTGGGAACCATAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGT
* * * * * * * * * * *
2037702 CGCAAGAAATGGTTGTCCTT-CCACCGTTTTTCATAGAATCAAAGTTTATCACCTAATTAAGACA
389 CGCAATAAAAGCTT-TTCTTGCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
* * * **
2037766 GACATGACTTGTCATACTAATCCC
453 AACAAGAATACTCATACTAATCCC
* *
2037790 CATTCTTTTCAGGATTTGGCACCATAAACATAGTCTTCAT-ATTAGGATTGACTAAATTGGTGCT
1 CATTCTTTTCAGGATTTGGCACCATAAACATAGTCTTC-TCATTAGGATAGACTAAATTGATGCT
* * *
2037854 TTGGTATCGCAAGAAAGGCTTTCTCCCCACCAATTTTTGTTAAGTCTAAGTTCATGCCTCAAATG
65 TTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATG
* * * * * *
2037919 AGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTAATTAGGCACTAAAAACACATTCT
130 AGACAAACATGGATTCAAGTAATAATATTCATTCATTTGGTGATTAGGCACTATAAACACATTCT
* * *
2037984 CCTCATTAAGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCATATTTT
195 CCTCATTAGGATAAATGATATTGATTGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTT
* * * * * * *
2038049 CCTTAAAATTGTAGTTCATCCCATAAATAAGGCAAGCATTGATTCTCTTAATAATCTCCATT-TT
260 CCATAAAATCGAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTT
* * * *
2038113 TTCAAGATTGGGAA-CAAAAACACATTCCCTTCGTTAGGATACATGACATTGATGCTTTGGTGTC
325 TTTAAGATTGGGAACCATAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTC
* * * * * ** * *
2038177 GTAAGAAAAGGTTGTCCTT-CCACTGTTTTTGAT--AATCAAAGTTTATCTCTTAAATAAGACAG
390 GCAATAAAAGCTT-TTCTTGCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
* * *
2038239 ACATGAATAGTCATTCTAATCCC
454 ACAAGAATACTCATACTAATCCC
* * *
2038262 CATTCTTTTCAAGATTTGGCACTATAAACATAGTCTTCTTATTAGGATAGACTAAATTGATGCTT
1 CATTCTTTTCAGGATTTGGCACCATAAACATAGTCTTCTCATTAGGATAGACTAAATTGATGCTT
* * *
2038327 TGGTTTCGCAAGAAAGGCTTTCTTCTCAGCAATTTCTGTAAAGTCTAAGTTCATAG-CTCAAATG
66 TGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCAT-GCCTCAAATG
* * * * *
2038391 AGACAAACATGGATTCTAGTAATGATATTCATTCATTAGGTAATTAGGCACTATAAACACATTCA
130 AGACAAACATGGATTCAAGTAATAATATTCATTCATTTGGTGATTAGGCACTATAAACACATTCT
* * *
2038456 CCACATTAGGATAAATGATATTTA-TGCTTTTCTTTTGCATCAAAATCTTTTCTTTGCCCTATTT
195 CCTCATTAGGATAAATGATATTGATTG-TTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTT
* * * * *
2038520 TCCTTAAAATCGAAGTACATCCCTTAAATAAGGCAAGAATTGATTCTCTTAACAGTCTCTATT-T
259 TCCATAAAATCGAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCT
** * * * * * *
2038584 ATTTT-ATTTTCGAGAATC--AAACAC-TTTCTGTTCGTTAGGATACATGACATTAACGCTTTGG
324 -TTTTAAGATT-GGGAACCATAAACACATTCCT-TTCATTAGGATACATGACATTGATGCTTTGG
* * * * *
2038645 TGTCACAAGAAAAGGTTTTCCTT-CCACAATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
386 TGTCGCAATAAAAGCTTTT-CTTGCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
* *
2038709 ACAAACATA-AATAGTCATACTAGTCCC
450 ACAAACA-AGAATACTCATACTAATCCC
* * * *
2038736 CATTCTTTTCAGGATTTGGCACTATAAAAATAGTCTTCACATTAGGATAGACTAAATTGTTGCTT
1 CATTCTTTTCAGGATTTGGCACCATAAACATAGTCTTCTCATTAGGATAGACTAAATTGATGCTT
* * *
2038801 TGGTATCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGA
66 TGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGA
*
2038866 GACAAACATGGATTCAAGTAATAATCTTCATTCATTTGGTGATTAGGCACTATAAACACATTCTC
131 GACAAACATGGATTCAAGTAATAATATTCATTCATTTGGTGATTAGGCACTATAAACACATTCTC
* *
2038931 CTCATTAGAATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTC
196 CTCATTAGGATAAATGATATTGATTGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTC
* * * *
2038996 CTTAAAATCGAAGTTCATCCTTTAAATAAGGCAAACACTGATTCTC-TCAACAGTCTCCATTCTT
261 CATAAAATCGAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCAT-AACAGTCTCCATTCTT
* * * * *
2039060 TTTAGGATTGGGAACCAAAAACACATTCCCTTT-GTTAGGATACATGACATTGATGCTATGGCGT
325 TTTAAGATTGGGAACCATAAACACATT-CCTTTCATTAGGATACATGACATTGATGCTTTGGTGT
* * * * *
2039124 CGCAAGAAAAGGTTTTCCTT-CTACCACTTTTGATAGAATCAAAGTTTGTCCCTTAAATAAGACA
389 CGCAATAAAAGCTTTT-CTTGCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
* *
2039188 AA-AATGAATAGTCATACTAGTCCC
453 AACAA-GAATACTCATACTAATCCC
* * * *
2039212 CATTATTTTAAAGATTT-GCACCATAAACATAGTCTTCTAATTAGGATAGA-TGAAATTGATGCT
1 CATTCTTTTCAGGATTTGGCACCATAAACATAGTCTTCTCATTAGGATAGACT-AAATTGATGCT
* * * * **
2039275 TTGGTTTCGCAACAAAGGCTTTCTTCTCACCAATGTTTGTAAAGTCTAAGTTCGTATCTCAAATG
65 TTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATG
* * *
2039340 AGACAAACATGGATTCAAGTAATAATCTTCACTCATTCGGTGATTAGGCACTATAAACACATTCT
130 AGACAAACATGGATTCAAGTAATAATATTCATTCATTTGGTGATTAGGCACTATAAACACATTCT
* * * *
2039405 CCCCATTAGGATAAATAATATTGATTGTTTTCTTTCGCATGAAAATCTTTTTTTTGCCCTATTTT
195 CCTCATTAGGATAAATGATATTGATTGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTT
*
2039470 CCATAAAATCGAAGTTCATCCCTTAAATAAAGCAAGCATTGATTCTCATAACAGTCTCCATTCTT
260 CCATAAAATCGAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTT
* * * * *
2039535 TTTAAGATTGGGAACCATAAACACATTCCCTTCGTTAGGATACATGACATTGGTGCATTAGTGTC
325 TTTAAGATTGGGAACCATAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTC
* * * * * *
2039600 GCAAGAAATG-TTTTCCTT-CTACAATTTTT-ATAGAACCAAAGTTTGTCTCTTAAATAGGACAA
390 GCAATAAAAGCTTTT-CTTGCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
*
2039662 ACACGAATACTCATACTAATCCC
454 ACAAGAATACTCATACTAATCCC
* * *
2039685 TATTCTTTTCAGGATTTGGCACCATAAACA-ATGTCTTCTCATTAGGAAACACTAAATTGATGCT
1 CATTCTTTTCAGGATTTGGCACCATAAACATA-GTCTTCTCATTAGGATAGACTAAATTGATGCT
* *
2039749 TTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAAG
65 TTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATG
* * *
2039814 AGACAAACATGGATTCAAGTAATAATCTTCACTCATTCGGTGATTAGGCACTATAAACACATTCT
130 AGACAAACATGGATTCAAGTAATAATATTCATTCATTTGGTGATTAGGCACTATAAACACATTCT
*
2039879 CCCCATTAGGATAAATGATATTGATTGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTT
195 CCTCATTAGGATAAATGATATTGATTGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTT
*
2039944 CCATAAAATCGAAGTTCATCCCTTAAATAAAGCAAGCATTGATTCTCATAACAGTCTCCATTCTT
260 CCATAAAATCGAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTT
* *
2040009 TTTAAGATTGGGAACCATAAACACATTCCTTTCATTAGGATATAGGACATTGATGCTTTGGTGTC
325 TTTAAGATTGGGAACCATAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTC
2040074 GCAATAAAAGCTTTTCTTGCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAA
390 GCAATAAAAGCTTTTCTTGCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAA
2040139 CAAGAATACTCATACTAATCCC
455 CAAGAATACTCATACTAATCCC
* *
2040161 CATTCTTTTCAAGATTTGGCACCATAAACATTGTCTTCTCATTAGGATAGACTAAATTGATGCTT
1 CATTCTTTTCAGGATTTGGCACCATAAACATAGTCTTCTCATTAGGATAGACTAAATTGATGCTT
* * * *
2040226 TGGTTTTGCAAGAAAGGATTTCTTCCCACCAATTTTCGTAAAGTCTAAGTTCGTGCCTCAAATGA
66 TGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGA
* * *
2040291 GACAAACATGGATTGAAGTAATAATATTCATTAATTTGGGGATTAGGCACTATAAACACATTCTC
131 GACAAACATGGATTCAAGTAATAATATTCATTCATTTGGTGATTAGGCACTATAAACACATTCTC
*
2040356 CTCATTAGGATAAATGATATTGATTGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCCATTTTC
196 CTCATTAGGATAAATGATATTGATTGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTC
* * * *
2040421 CTTAAAATCGAAGTTCATTCCTTAAATAAGGCAAGCGTTGATTCTTATAACAGTCTCCATTCTTT
261 CATAAAATCGAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTTT
* * * * * *
2040486 TTAAGATTGGGAACCATAAACACATTACTTTCATTAAGATACATGACAATGATGCTATAGTATCG
326 TTAAGATTGGGAACCATAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCG
* *
2040551 CAATAAAAGCTTTTCTTGCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAT
391 CAATAAAAGCTTTTCTTGCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
* *
2040616 AAAAATACTCATACTAATACC
456 AAGAATACTCATACTAATCCC
* *
2040637 CATTCTTTTCAGGATTTGGCACCATAAACAAAGTCTTCTCATTAGGAAAGACTAAATTGATGCTT
1 CATTCTTTTCAGGATTTGGCACCATAAACATAGTCTTCTCATTAGGATAGACTAAATTGATGCTT
* *
2040702 TGGTTTCGCAAGAAAGGCTTTCTTACCACCAATTTTTGTAAAGTCTAAGTTCACGCCTCAAATGA
66 TGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGA
* * * * *
2040767 GTCAAACACGGATTCAAGTAATAATATTCATTCATTTGGGGATTAGGCACTATAAAAATATTCTC
131 GACAAACATGGATTCAAGTAATAATATTCATTCATTTGGTGATTAGGCACTATAAACACATTCTC
* * * *
2040832 CTCATTAGGATAAATGATATTGATGGTTTTCCTTTGCATGAAAATCTTTTCTTTGCCTTAATTTC
196 CTCATTAGGATAAATGATATTGATTGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTC
* *
2040897 CATAAAATTGAAGTTCATCCCTTAAATAAAGCAAGCATTGATTCTCATAACAGTCTCCATTCTTT
261 CATAAAATCGAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTTT
* *
2040962 TTAAGATTGGGAACCATAAACACATTCCTTTCATTAGGATATAGGACATTGATGCTTTGGTGTCG
326 TTAAGATTGGGAACCATAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCG
2041027 CAATAAAAGCTTTTCTTGCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
391 CAATAAAAGCTTTTCTTGCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
2041092 AAGAATACTCATACTAATCCC
456 AAGAATACTCATACTAATCCC
* *
2041113 CATTCTTTTCAAGATTTGGCACCATAAACATTGTCTTCTCATTAGGATAGACTAAATTGATGCTT
1 CATTCTTTTCAGGATTTGGCACCATAAACATAGTCTTCTCATTAGGATAGACTAAATTGATGCTT
* * * *
2041178 TGGTTTTGCAAGAAAGGATTTCTTCCCACCAATTTTCGTAAAGTCTAAGTTCGTGCCTCAAATGA
66 TGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGA
* * *
2041243 GACAAACATGGATTGAAGTAATAATATTCATTAATTTGGGGATTAGGCACTATAAACACATTCTC
131 GACAAACATGGATTCAAGTAATAATATTCATTCATTTGGTGATTAGGCACTATAAACACATTCTC
*
2041308 CTCATTAGGATAAATGATATTGATTGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCCATTTTC
196 CTCATTAGGATAAATGATATTGATTGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTC
* * * *
2041373 CTTAAAATCGAAGTTCATTCCTTAAATAAGGCAAGCATTGATTCTTATAACAGTCTTCATTCTTT
261 CATAAAATCGAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTTT
* * * * *
2041438 TTAAGATTGGGAACCATAAACACATTCCTTTCATTAAGATACATGACAATGATGCTATAGTGTCA
326 TTAAGATTGGGAACCATAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCG
* *
2041503 CAATAAAAGCTTTTCTTGCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAAACAAAC
391 CAATAAAAGCTTTTCTTGCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
* * *
2041568 AAAAATACTCACACTAATACC
456 AAGAATACTCATACTAATCCC
*
2041589 CATTCTTTTCAGGATTTGGCACCATAAACATAGTCTTCTTATTAGGATAGACTAAATTGATGCTT
1 CATTCTTTTCAGGATTTGGCACCATAAACATAGTCTTCTCATTAGGATAGACTAAATTGATGCTT
* * *
2041654 TGGTTTCGCAAGAAAGGCTTT-TTCCCGCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAAGA
66 TGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGA
* * * * *
2041718 GACAAACATGGATTCAAGTAATAATCTTCACTCATTCGGTGATTAGGCACTGTAAACGCATTCTC
131 GACAAACATGGATTCAAGTAATAATATTCATTCATTTGGTGATTAGGCACTATAAACACATTCTC
*
2041783 CCCATTAGGATAAATGATATTGATTGTTTTCTTTTGCATG-AAATACTTTTCTTTGCCCTATTTT
196 CTCATTAGGATAAATGATATTGATTGTTTTCTTTTGCATGAAAAT-CTTTTCTTTGCCCTATTTT
*
2041847 CCATAAAATCGAAGTTCATCCCTTAAATAAAGCAAGCATTGATTCTCATAACAGTCTCCATTCTT
260 CCATAAAATCGAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTT
2041912 TTTAAGATTGGGAACCATAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTC
325 TTTAAGATTGGGAACCATAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTC
* *
2041977 GCAATAAAAGCTTTTCTTGCAACCATTTTTGATAAAATCAAAGTTTGTCTCTTAAATAAAACAAA
390 GCAATAAAAGCTTTTCTTGCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAA
*
2042042 CATGAATACTCATACTAATCCC
455 CAAGAATACTCATACTAATCCC
* *
2042064 CATTCTTTTCAGGATTTGGCACCATAAACAAAGTCTTCTCATTAGGAAAGACTAAATTGATGCTT
1 CATTCTTTTCAGGATTTGGCACCATAAACATAGTCTTCTCATTAGGATAGACTAAATTGATGCTT
* *
2042129 TGATTTCGCAAGAAAGGCTTTCTTCCCACCAACTTTTGTAAAGTCTAAGTTCATGCCTCAAATGA
66 TGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGA
* * * *
2042194 GTCAAACACGGATTCAAGTAATAATATTCATTCATTTGGGGATTAGGCACTATAAA-A-ATACTC
131 GACAAACATGGATTCAAGTAATAATATTCATTCATTTGGTGATTAGGCACTATAAACACATTCTC
* * * *
2042257 CTCATTAGGATAAATGATATTGATGGTTTTCCTTTGCATGAAAATCTTTTCTTTGCCTTATTTTT
196 CTCATTAGGATAAATGATATTGATTGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTC
* *
2042322 CATAAAATCGAAGTTCATCCCTTAAATAGGGCAAGCATTGATTCTTATAACAGTCTCCATTCTTT
261 CATAAAATCGAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTTT
* * *
2042387 TTAAGATTGGGAACCATAAACACATTCCTTTCATTAAGATACATGACAATGATGCTTTAGTGTCG
326 TTAAGATTGGGAACCATAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCG
*
2042452 CAATAAAAGCTTTTCTTGCAACCGTTTGTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAA
391 CAATAAAAGCTTTTCTTGCAACCATTT-TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAA
*
2042517 CAAAAATACTCATACTAATCCC
455 CAAGAATACTCATACTAATCCC
*
2042539 CATTCTTTTCAGGATTTGGCACCATAAACATTGTCTTCTCATTAGGATAGACTAAATTGATGCTT
1 CATTCTTTTCAGGATTTGGCACCATAAACATAGTCTTCTCATTAGGATAGACTAAATTGATGCTT
*
2042604 TGGTTTCGCAAGAAAGGCTTTCTTCCCACCAAATTTTGTAAAGTCTAAGTTCATGCCTCAAATGA
66 TGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGA
* * * * * *
2042669 GTCAAACACGGATTCAAGTAATAATATTCATTTATTTGGGGATTAGGCACTATAAAAATATTCTC
131 GACAAACATGGATTCAAGTAATAATATTCATTCATTTGGTGATTAGGCACTATAAACACATTCTC
* * *
2042734 CTCATTAGGATAAATGATATTGATGGTTTTCCTTTGCATGAAAATCTTTTCTTTGCCTTATTTTC
196 CTCATTAGGATAAATGATATTGATTGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTC
* * *
2042799 CATAAAATCGAAGTTCATTCCTTAAATAAAGCAAGCATTGATTCTCATAACCGTCTCCATTCTTT
261 CATAAAATCGAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTTT
* * *
2042864 TTAAGATTGGGAACCATAAACCCATTCCCTTCGTTAGGATACATGACATTGAT
326 TTAAGATTGGGAACCATAAACACATTCCTTTCATTAGGATACATGACATTGAT
2042917 TGATGAAAAC
Statistics
Matches: 4686, Mismatches: 399, Indels: 81
0.91 0.08 0.02
Matches are distributed among these distances:
471 6 0.00
472 401 0.09
473 72 0.02
474 1323 0.28
475 1036 0.22
476 1665 0.36
477 181 0.04
478 2 0.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (476 bp):
CATTCTTTTCAGGATTTGGCACCATAAACATAGTCTTCTCATTAGGATAGACTAAATTGATGCTT
TGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGA
GACAAACATGGATTCAAGTAATAATATTCATTCATTTGGTGATTAGGCACTATAAACACATTCTC
CTCATTAGGATAAATGATATTGATTGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTC
CATAAAATCGAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTTT
TTAAGATTGGGAACCATAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCG
CAATAAAAGCTTTTCTTGCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
AAGAATACTCATACTAATCCC
Found at i:2044540 original size:12 final size:11
Alignment explanation
Indices: 2044518--2044593 Score: 61
Period size: 12 Copynumber: 6.9 Consensus size: 11
2044508 AGAGAAAGAA
*
2044518 GAGAGAGGAGG
1 GAGATAGGAGG
2044529 GATGATAGGAGG
1 GA-GATAGGAGG
2044541 AGAGATAGGA--
1 -GAGATAGGAGG
*
2044551 GAGATAGTA--
1 GAGATAGGAGG
2044560 GAGATAGGAGG
1 GAGATAGGAGG
2044571 GATGATAGGAGG
1 GA-GATAGGAGG
*
2044583 AGAGACAGGAG
1 -GAGATAGGAG
2044594 AGATAATAGA
Statistics
Matches: 55, Mismatches: 4, Indels: 11
0.79 0.06 0.16
Matches are distributed among these distances:
9 16 0.29
11 4 0.07
12 31 0.56
13 4 0.07
ACGTcount: A:0.39, C:0.01, G:0.49, T:0.11
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:2044554 original size:33 final size:30
Alignment explanation
Indices: 2044508--2044598 Score: 76
Period size: 33 Copynumber: 2.8 Consensus size: 30
2044498 TAGCCCTCAA
* *
2044508 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGG
1 AGAGATAGGAGAGAGAGGA--GA-GATAGGAGG
* *
2044541 AGAGATAGGAGAGATAGTAGAGATAGGAGG
1 AGAGATAGGAGAGAGAGGAGAGATAGGAGG
2044571 -GATGATAGGAGGAGAGACAGGAGAGATA
1 AGA-GATAGGA-GAGAG--AGGAGAGATA
2044599 ATAGAGAGAG
Statistics
Matches: 48, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
29 2 0.04
30 16 0.33
31 6 0.12
33 24 0.50
ACGTcount: A:0.44, C:0.01, G:0.45, T:0.10
Consensus pattern (30 bp):
AGAGATAGGAGAGAGAGGAGAGATAGGAGG
Found at i:2044563 original size:11 final size:9
Alignment explanation
Indices: 2044538--2044598 Score: 56
Period size: 9 Copynumber: 7.1 Consensus size: 9
2044528 GGATGATAGG
2044538 AGGAGAGAT
1 AGGAGAGAT
2044547 AGGAGAGAT
1 AGGAGAGAT
*
2044556 AGTAGAGAT
1 AGGAGAGAT
*
2044565 AGGAGGGAT
1 AGGAGAGAT
* *
2044574 --GATAG-G
1 AGGAGAGAT
*
2044580 AGGAGAGAC
1 AGGAGAGAT
2044589 AGGAGAGAT
1 AGGAGAGAT
2044598 A
1 A
2044599 ATAGAGAGAG
Statistics
Matches: 40, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
7 3 0.08
8 4 0.10
9 33 0.82
ACGTcount: A:0.43, C:0.02, G:0.44, T:0.11
Consensus pattern (9 bp):
AGGAGAGAT
Found at i:2044569 original size:42 final size:42
Alignment explanation
Indices: 2044508--2044626 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
2044498 TAGCCCTCAA
* * *
2044508 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGATAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
2044550 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
2044592 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
2044627 GAGAGAAAAA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.43, C:0.02, G:0.46, T:0.09
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:2055639 original size:42 final size:42
Alignment explanation
Indices: 2055584--2055702 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
2055574 TTCTTCTCTC
* *
2055584 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
2055626 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
2055668 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
2055703 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:2055643 original size:12 final size:11
Alignment explanation
Indices: 2055617--2055692 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
2055607 TCTATTATCT
*
2055617 CTCCTGTCTCTC
1 CTCCTATCTC-C
2055629 CTCCTATCATCC
1 CTCCTATC-TCC
2055641 CTCCTATCT--
1 CTCCTATCTCC
*
2055650 CTACTATCT--
1 CTCCTATCTCC
*
2055659 CTCCTGTCTCTC
1 CTCCTATCTC-C
2055671 CTCCTATCATCC
1 CTCCTATC-TCC
*
2055683 CTCCTCTCTC
1 CTCCTATCTC
2055693 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:2055644 original size:24 final size:24
Alignment explanation
Indices: 2055608--2055693 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
2055598 CCTCCTCTCT
* *
2055608 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
2055632 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
2055653 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
2055674 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
2055694 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:2055668 original size:18 final size:18
Alignment explanation
Indices: 2055599--2055669 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
2055589 CCTGTCATCC
* *
2055599 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
2055617 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
2055639 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
2055659 CTCCTGTCTCT
1 CTCCTGTCTCT
2055670 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:2058597 original size:476 final size:476
Alignment explanation
Indices: 2057320--2064602 Score: 6908
Period size: 476 Copynumber: 15.2 Consensus size: 476
2057310 TTTTCATCAG
* ** * *
2057320 AAAGTTTGTCTCGTAAATTGGACAAACAAGAATACTCATACTAAGCCCAATTCTTTTAAGGGTTA
1 AAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTCATACTAATCCCAATTCTTTTAAGGATTA
** * * * * **
2057385 CACACTATAAACATAGTCTTCTTACAAGGCTAGACAAAATTGATGCTTTGGTTTCGCAAGAAAGG
66 TGCACCATAAACATAGTCTTCTCATAAGGATAGATGAAATTGATGCTTTGGTTTCGCAAGAAAGG
* * *
2057450 CTTTCTTCCCACCAATTTTTGTAAAGTCTATGTTCATGCCTCAAGTGAGACAAACATGGATTCCC
131 CTTTCTTCCCACCAATTTTTGTAAAGTCTAGGTTCGTGCCTCAAGTGAGACAAACATGGATTCCA
* * * * *
2057515 GAAAAAATCTTCATTCAGTTTGTGATTAGGCACTAAAAACACATTCTTCTCATTAGGATAAATGA
196 GTAATAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGA
* * * *
2057580 TATTGATGGCTTTCTTTTGCAGGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATTGATGTTTG
261 TATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCGATGTTTA
* * * * **
2057645 TCCCATAAATAAGGCAAGTATTGGTTCTCATAACAGCCTACAATATTTTCAAGATTGGGAAAGAA
326 TCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGCCTACAATATTTTCAGGATTGGGAACCAA
* * * *
2057710 AAACACATTGCCTTCATTAGGATACATGACATTGATGCTTCGGGGTCGCAAGAAAAGCTTTTCTT
391 AAACACATTCCCTTCATTACGATACATGACATTGATGCTTTGGGGTTGCAAGAAAAGCTTTTCTT
*
2057775 GCAATCATTTTTGATAGAATC
456 GCAACCATTTTTGATAGAATC
* * * * * * * *
2057796 AAACTTTGTCTCCTAAATAAGACAAACACGAATAGTCAAACTAATCCCCATTCGTTTAAGCATTA
1 AAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTCATACTAATCCCAATTCTTTTAAGGATTA
* * * ** * * * * * *
2057861 TGCACCGTAAACTTTGTCTTCTCATAACAAAACATGATATTGATGCTTTAGTTTCGTAAAAAAAG
66 TGCACCATAAACATAGTCTTCTCATAAGGATAGATGAAATTGATGCTTTGGTTTCG-CAAGAAAG
* * * *
2057926 GCTTTCATCCCCCCAATTCTTGTAAAG-CTTAAGG-TCGTGCCTCAAATGAGACAAACATGGATT
130 GCTTTCTTCCCACCAATTTTTGTAAAGTC-T-AGGTTCGTGCCTCAAGTGAGACAAACATGGATT
* ** * *
2057989 CTAGTAATGGTCTTCATTTATTTTGTGATTGGGCACTATAAACACATTCTCCTCATTAGGATAAA
193 CCAGTAATAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAA
* * * *
2058054 TGTTATTGATTGTTTTCGTTTGCCTGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCGATGT
258 TGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCGATGT
* ** * ** * *
2058119 TTATCCCTTATATAAGGCAAGCATTGATTCTCGCAACAACCTACCTTATTTTCAAGATTAGGAAC
323 TTATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGCCTACAATATTTTCAGGATTGGGAAC
* * *
2058184 CAAAAACACATTCCCTTCGTTACGATACAAGACATTGATGCTTTGGGGTTGTAAGAAAAGCTTTT
388 CAAAAACACATTCCCTTCATTACGATACATGACATTGATGCTTTGGGGTTGCAAGAAAAGCTTTT
* *
2058249 CTTGCAACCGTTTTTGATAGAATT
453 CTTGCAACCATTTTTGATAGAATC
** * * * *
2058273 AGTGTTTATGTCTTAAATAAGACAAACATGAATACTCATTCTAATCCCAATTCTTTTAAGGATTA
1 AAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTCATACTAATCCCAATTCTTTTAAGGATTA
* * * ** * **
2058338 CGCACCATAAACATAGTCTTCTCATTAGGATAGATGAAATTGATACTTTTTTTTCACAAGAAAAA
66 TGCACCATAAACATAGTCTTCTCATAAGGATAGATGAAATTGATGCTTTGGTTTCGCAAGAAAGG
* * *
2058403 CTTTCTTGCCACCAATTTTTCTAAAGTCTAGGTTCGTGCCTCGAAAG-GAG-CAAACATGAATTC
131 CTTTCTTCCCACCAATTTTTGTAAAGTCTAGGTTCGTGCCTC--AAGTGAGACAAACATGGATTC
* ** * *
2058466 TAGTAATACCCTTCATTCTTTTTGTGATTAGGCACCATAAACACATTCTCCTCATTAGGATAAAT
194 CAGTAATAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAT
** * * *
2058531 GATATTGACAGTTTTCTTTTGCATGAAAATCTTTTCTTTGTCCTATTTCCCTTAAAATTGATGTT
259 GATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCGATGTT
* * * *
2058596 TATCCCTTTAAA-AAGGCAAGCATTGGTTCTCGTAACAGCATACAATATTTTTAGGATTGGGAAC
324 TATCCC-TTAAATAAGGCAAGCATTGATTCTCATAACAGCCTACAATATTTTCAGGATTGGGAAC
* *
2058660 CGAAAACACATTCCCTTCATTACGAAACATGACATTGATGCTTTGGGGTTGCAAGAAAAGCTTTT
388 CAAAAACACATTCCCTTCATTACGATACATGACATTGATGCTTTGGGGTTGCAAGAAAAGCTTTT
* *
2058725 CTTGCAACAATTTTTGACAGAATC
453 CTTGCAACCATTTTTGATAGAATC
* * * * * * *
2058749 AAGGTTTGTCTCTTAAATAGGATAAACATGAATAATCATTCTAATCCC-ATTCTTTTATGGATTA
1 AAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTCATACTAATCCCAATTCTTTTAAGGATTA
* * * *
2058813 CGCACCATAAACATAGTCTTCTTATAAGGATAGACGAAATTGATGCTTCGGTTTCGCAAGAAAGG
66 TGCACCATAAACATAGTCTTCTCATAAGGATAGATGAAATTGATGCTTTGGTTTCGCAAGAAAGG
* *
2058878 CTTTCTTCCCACCAACTTTTGTAAAGTCTATGTTCGTGCCTCAAGTGAGACAAACATGGATTCCA
131 CTTTCTTCCCACCAATTTTTGTAAAGTCTAGGTTCGTGCCTCAAGTGAGACAAACATGGATTCCA
* * * * *
2058943 -TAAAAAATCTTCTTTCATTTTGTGATTAGGCACTAAAAACACATTCTTCTCATTACGATAAATG
196 GT-AATAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATG
* *
2059007 ATATTGATGGTTTTCTTTTACGTGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCGATGTTT
260 ATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCGATGTTT
** * * * *
2059072 ATCCCTTAAATAAGGTGAGTATTGATTCTCATAACAGCCTACAATATTTTCAAGATTGGAAAACA
325 ATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGCCTACAATATTTTCAGGATTGGGAACCA
* * * * *
2059137 AAAACACATTCCCTTCTTTAGGATAAATGACAATGATGCTTTGGGGTCGCAAGAAAAGCTTTTCT
390 AAAACACATTCCCTTCATTACGATACATGACATTGATGCTTTGGGGTTGCAAGAAAAGCTTTTCT
* *
2059202 GGCAACCGTTTTTGATAGAATC
455 TGCAACCATTTTTGATAGAATC
* * * * * * *
2059224 AATGTTTGTCTCTTAAATAAGTCAAACACA-AATAGTCATACTAATCTCTATTCTTCTAAGAATT
1 AAAGTTTGTCTCTTAAATAAGACAAACA-AGAATACTCATACTAATCCCAATTCTTTTAAGGATT
* * * * * ** *
2059288 ATGCACCATAAACTTAGTCTTCTCAT-AGCAATACATGATATTGATGCTTTAGTTTCATAAAAAA
65 ATGCACCATAAACATAGTCTTCTCATAAG-GATAGATGAAATTGATGCTTTGGTTTC-GCAAGAA
* * * * * * *
2059352 AGGCTTTCATCCCACCAATTATTGCAAAGTTTAAGG-TCGTGCCTCAAATGAGAAAAAGATGGAT
128 AGGCTTTCTTCCCACCAATTTTTGTAAAGTCT-AGGTTCGTGCCTCAAGTGAGACAAACATGGAT
* * * *
2059416 TCTAGCAATGATCTTCATTCATTTTGTGATTGGGCACTATAAACACATTCTCCTCATTAGGATAA
192 TCCAGTAATAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAA
* * * * *
2059481 AGGTTATTGATTGTTTCCTTTTGCATGAAAATCTTTAT-TTTGCCCTATTTTCATTAAAATCGAT
257 ATGATATTGATGGTTTTCTTTTGCATGAAAATCTTT-TCTTTGCCCTATTTTCCTTAAAATCGAT
* * * * *
2059545 GTTTAGCCCTTATATAAGGCAAGCATTGACTCTCGTAACAGCCTATC-TTATTTTCAGGATTGGG
321 GTTTATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGCCTA-CAATATTTTCAGGATTGGG
* * * *
2059609 AACCAAAAACAAATTCCCTTTATTACGATGCAAGACATTGATGCTTTGGGGTTGCAAGAAAAGCT
385 AACCAAAAACACATTCCCTTCATTACGATACATGACATTGATGCTTTGGGGTTGCAAGAAAAGCT
* *
2059674 TTTCTTACAACCGTTTTTGATAGAATC
450 TTTCTTGCAACCATTTTTGATAGAATC
* * * *
2059701 AATGTTTATGTCTTAAAT-AGAACAAACAAGAATACTCATACTAATCCCCATTCTTTTAAGGATT
1 AAAGTTTGTCTCTTAAATAAG-ACAAACAAGAATACTCATACTAATCCCAATTCTTTTAAGGATT
* * * *
2059765 ACGCACCATAAACATAGTCTTCTCATTAGGATAGATGAAATTGATGCTTTGGTTTCACAAGAAAA
65 ATGCACCATAAACATAGTCTTCTCATAAGGATAGATGAAATTGATGCTTTGGTTTCGCAAGAAAG
* * * * * * ** * * *
2059830 ACTTTCTTGCTACCAATTTTTGTAAACTCTAAGTTCGCGCCTCAAAAG-GGCGAAACTTGAATTC
130 GCTTTCTTCCCACCAATTTTTGTAAAGTCTAGGTTCGTGCCTCAAGTGAGAC-AAACATGGATTC
* * * * *
2059894 CAGTGATACTCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCTTCTTTAGGTTAAAT
194 CAGTAATAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAT
* * * *
2059959 GATATTGATGGTTTTC-TTTGCCATGAAAATCTTCTCTTTGTCCTATTTCCCTTAAAATTGATGT
259 GATATTGATGGTTTTCTTTTG-CATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCGATGT
* *
2060023 TTATCCCTTAAATAAGGCAAGCAATGATTCTTATAACAGCCTACAATATTTTCAGGATTGGGAAC
323 TTATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGCCTACAATATTTTCAGGATTGGGAAC
* * *
2060088 CAGAAACACATTCCCTTTATTACGAAACATGACATTGATGCTTTGGGGTTGCAAGAAAAGCTTTT
388 CAAAAACACATTCCCTTCATTACGATACATGACATTGATGCTTTGGGGTTGCAAGAAAAGCTTTT
* * *
2060153 CTTGGAACTATTTTTGACAGAATC
453 CTTGCAACCATTTTTGATAGAATC
* * * * * *
2060177 GAAGTTTGTCTCTTAAATAGGACAAACATGAATACTCAAACTAATCCCCATTCTTTTAAGGATTG
1 AAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTCATACTAATCCCAATTCTTTTAAGGATTA
* * ** *
2060242 CGCACCATAAACATAGTCTTC-CCTGTGGGATAGACGAAATTGATGCTTTGGTTTCGCAAGAAAG
66 TGCACCATAAACATAGTCTTCTCAT-AAGGATAGATGAAATTGATGCTTTGGTTTCGCAAGAAAG
* *
2060306 GCTTTCTTCCCACCAATTTTTGTAAAGTCGAAGTTCGTGCCTCAAGTGAGACAAACATGGATTCC
130 GCTTTCTTCCCACCAATTTTTGTAAAGTCTAGGTTCGTGCCTCAAGTGAGACAAACATGGATTCC
* * * * * *
2060371 AGTAATAATCTTCATTCATTTTGTAATTATGCACTAAAAACACATTCTTCTCATTTGGATAAAAG
195 AGTAATAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATG
* * * *
2060436 ATATTGATAGTTTTCTTTTGCATGAAAATCTGTTCTCTGCCCTATTTTCCTTAAAATCAATGTTT
260 ATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCGATGTTT
* * * * *
2060501 ATCCCTTAAATAAGGCAAGTAATGATTCTCATAACAGCCCACAATATTTTCAGGATTGAG-AGCA
325 ATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGCCTACAATATTTTCAGGATTGGGAACCA
* * * * * *
2060565 GAAACACGTTCCCTTCATTACGAAATATGACATTGATGCTTTGGGGTTGTAAGAAAAAC----C-
390 AAAACACATTCCCTTCATTACGATACATGACATTGATGCTTTGGGGTTGCAAGAAAAGCTTTTCT
*
2060625 -G----C--TTTTGACAGAATC
455 TGCAACCATTTTTGATAGAATC
* *
2060640 AAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTAAGGATTA
1 AAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTCATACTAATCCCAATTCTTTTAAGGATTA
* * * *
2060705 CGCACCATAAACAT-GTCTTCTCATTAGGATAGACGAAA--AATGCTTTGGTTTCGCAAGAAAGG
66 TGCACCATAAACATAGTCTTCTCATAAGGATAGATGAAATTGATGCTTTGGTTTCGCAAGAAAGG
* *
2060767 CTATCTTCCCACCAATTTTTGT-AAGCTCTAAGTTCGTGCCTCAAGTGAGACAAACATGGATTCC
131 CTTTCTTCCCACCAATTTTTGTAAAG-TCTAGGTTCGTGCCTCAAGTGAGACAAACATGGATTCC
* * * *
2060831 AATAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTTATTTGGATAAATG
195 AGTAATAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATG
* *
2060896 ATATTGATAGTTTTCTTTTGCATGAAAATCTTTTCTTTGCACTATTTTCCTTAAAATCGATGTTT
260 ATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCGATGTTT
* *
2060961 ATCCCTTAAATAAGGCAGGCATTGATTCTCATAACAGCCTACAATATTTTCAGGATTGGGATCCA
325 ATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGCCTACAATATTTTCAGGATTGGGAACCA
* * * * * *
2061026 GAAACACATTCCCTTCAATACGAAACATGACATTGAAGGTTTGGGGGTGCAAGAAAAGCTTTTCT
390 AAAACACATTCCCTTCATTACGATACATGACATTGATGCTTTGGGGTTGCAAGAAAAGCTTTTCT
* ** *
2061091 TACAACTGTTTTTGACT-GAAAC
455 TGCAACCATTTTTGA-TAGAATC
* * * *
2061113 AAAGTTTGTCTCTTAAATAGGGCAAACAAGAATACTCATGCTAAGCCCAATTCTTTTAAGGGA-T
1 AAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTCATACTAATCCCAATTCTTTTAA-GGATT
* *
2061177 ATGCACCATAAACATAGTCTTCTTATAAGGATAGATGAAATTGATGCTTTGGTTTCGCAAGAATG
65 ATGCACCATAAACATAGTCTTCTCATAAGGATAGATGAAATTGATGCTTTGGTTTCGCAAGAAAG
** * * * *
2061242 GCTTTCTTTTCAACAATTTTTGTAGAGTCTAAGTCCGTGCCTCAAGTGAGACAAACATGGATTCC
130 GCTTTCTTCCCACCAATTTTTGTAAAGTCTAGGTTCGTGCCTCAAGTGAGACAAACATGGATTCC
* * * * * * *
2061307 AGAAAAAATCTTCATTCATTTTCTGATTAGGCTCTAAAAACACATTCAT-CACGTTAGGATAAAT
195 AGTAATAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC-TCCTCATTAGGATAAAT
*
2061371 GATATTGATGGTTTT-TTTTGCATGAAAATCTTTTGTTTGCCCTATTTTCCTTAAAATCGATGTT
259 GATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCGATGTT
* * * *
2061435 TATCCCTTAAATAAGGCAAGTATTGATTCTCATAACAGCGTACAATATTTTCAAGATTGGGAAAC
324 TATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGCCTACAATATTTTCAGGATTGGGAACC
* * * * *
2061500 AAAAACACATTCCCTTCATTAGGATACATGATAATGCTGCTTTGGGGTCGCAAGAAAAGCTTTTC
389 AAAAACACATTCCCTTCATTACGATACATGACATTGATGCTTTGGGGTTGCAAGAAAAGCTTTTC
* *
2061565 TTGCAACTAATTTTGATAGAATC
454 TTGCAACCATTTTTGATAGAATC
* * * * *
2061588 AAGGTTTGTCTCTTAAATAAGACAAACACGAATAGTCACACTAATCCCCATTCTTTTAAGGATTA
1 AAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTCATACTAATCCCAATTCTTTTAAGGATTA
* ** * * * *
2061653 TGCACCATAAACTTAGTCTTCTCATAACAATACATGATATTGATGCTTTAGTTTCGTAAGAAAGG
66 TGCACCATAAACATAGTCTTCTCATAAGGATAGATGAAATTGATGCTTTGGTTTCGCAAGAAAGG
* * * * * *
2061718 CTTTCATCCCAGCAATTTTTGTAAAGTTTAAGGTT-GTGCCTCAAATGAGACAAAAATGGATTCT
131 CTTTCTTCCCACCAATTTTTGTAAAGTCT-AGGTTCGTGCCTCAAGTGAGACAAACATGGATTCC
* * * * * * *
2061782 AGCAATGATCTGCATTTATTTTGTGATTGGGCACTATAAACACTTTCTCCTCATTAGGATAAAAG
195 AGTAATAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATG
* * * *
2061847 TTACTGATTGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCGATGCTT
260 ATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCGATGTTT
* * * * * * * * **
2061912 ATCCCTTATATAAGGCAAGCGTTGATTCTCGTAATTTTCTTTTGCATGAAAATCTTTTCTTTGCC
325 ATCCCTTAAATAAGGCAAGCATTGATTCTCATAA----C---AGCCT-ACAATATTTTC--AGGA
* ***** * * ** * * * *
2061977 CTATTTTCCTTAAAATCGATGCTTATCCCTT-ATATA--AGGCAAG-CGTTGATTC-TT---GTA
380 TTGGGAACC--AAAAAC-A--CAT-TCCCTTCAT-TACGATACATGACATTGATGCTTTGGGGTT
* *** * * ** ** * *
2062034 AC-AGCCTATCTTATT-TT--TAGGA-TTGGGA-ACCAA-A
438 GCAAGAAAAGCTT-TTCTTGCAACCATTTTTGATA-GAATC
** ** * * * * * ** *** **
2062068 AACACATTCCCT-TTATTATGATACAAGACAAG-ATGCTTTAGGGTTGCAAGAAAAGCTTTTCTT
1 AA-AGTTTGTCTCTTA-AATAAGACAA-ACAAGAATAC-TCA----T--ACTAATCCCAATTCTT
** * * * * ** *** * * * *
2062131 GCAACCGTTTTTGATAGAATCAATGTTTATGTCTTAAATAGGACAAACATGAATACTCAT-ACTA
56 TTAA-GGATTATG-CACCAT-AA-ACATA-GTCTT--CT----CATA-A-GGATA--GATGA--A
* * * * * ** **** *
2062195 ATCTCAATTCTTTTAAGGATTACGCACCATAAA--CATAGTCTTCCCATTAGGATAGACG-AAAT
104 AT-T-GATGC-TTT--GG-TTTCGCA--AGAAAGGC-T-TTCTTCCCACCA--ATTTTTGTAAAG
* ** *** *** ** ** * * *
2062257 TCATA-ATTTTTTTTTGCAA--GA-A-AAAC-TTTCTTGCCA-CCATTTTTTGTAAAGTCTAAGT
157 TC-TAGGTTCGTGCCT-CAAGTGAGACAAACATGGATT-CCAGTAATAATCT-T-CA-T-TCA-T
* * ** * * * * * *
2062315 TCGTGCCTCAAAAGGGCCAAAC-ATGAATTCTAGTAATACTCTTCATTCATTTTGTGAT-TAGGC
214 T-TTG--TGATTA-GG-C--ACTAT-AA-AC-A--CAT--TC-TC-CTCA-TTAG-GATAAATG-
** *** * * * *
2062378 ACTATAAACACATTCTCTTCATTAGGATAAAGGATATTGATGGTTTTCTTTTGCATGAAAATCTT
260 A-TATTGA-TGGTTTTCTT--TT-GCAT----GA-A--AAT-CTTTTC--TT---TG--------
* * * * *
2062443 TTCTTTGTCCTATTTCCCTTAAAATTGATGTTTATCCCTTAAAAAAGGCAAGGATTGATTCTCGT
299 --C-----CCTATTTTCCTTAAAATCGATGTTTATCCCTTAAATAAGGCAAGCATTGATTCTCAT
* * * * * * * *
2062508 TACAACATACAATATTTTCAGGATTGGAAACTAGAAACACATTGCCTTCATTACGAAACATGACA
357 AACAGCCTACAATATTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTACGATACATGACA
** * * *
2062573 TTGACACTTTGGGGCTGCAAGAAAAGCTTTTCTTGCAACTACTTTTGATAGAATC
422 TTGATGCTTTGGGGTTGCAAGAAAAGCTTTTCTTGCAACCATTTTTGATAGAATC
* * * * * *
2062628 AAAGTTTGTCTCGTAAATAGGACAAGCAAGAATACTCATACTAAGCCCAATTCTTTTATGGGTTA
1 AAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTCATACTAATCCCAATTCTTTTAAGGATTA
** * * ** *
2062693 CACACTATAAACATAGTCTTCTTATAAGGATAGACAAAATTGATGCTTTGGTTTCACAAGAAAGG
66 TGCACCATAAACATAGTCTTCTCATAAGGATAGATGAAATTGATGCTTTGGTTTCGCAAGAAAGG
* *
2062758 CTTTCTTCCCACCAATTTTTGTAAAGTCTATGTTCGTGCCTCAAGTGAGACAAACTTGGATTCCA
131 CTTTCTTCCCACCAATTTTTGTAAAGTCTAGGTTCGTGCCTCAAGTGAGACAAACATGGATTCCA
* * * * *
2062823 G-AAAAATTCTTCTTTCATTTTGTGATTAGGCACTAAAAACACATTCTTCTCATTACGATAAATG
196 GTAATAA-TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATG
* * * * *
2062887 ACATTGACGGCTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTTGAAATCGATGTTT
260 ATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCGATGTTT
* * * * *
2062952 ATCCCTTAAATAAGGCAAGTATTGATTCTCCTAACAGCCTACAATACTTTCAAGATTGGGAAACA
325 ATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGCCTACAATATTTTCAGGATTGGGAACCA
* * * * *
2063017 AAAACATATTCCCTTCATTAGGATACATGACAATGATGCTTTGGGGTCGCAAGAAAAGTTTTTCT
390 AAAACACATTCCCTTCATTACGATACATGACATTGATGCTTTGGGGTTGCAAGAAAAGCTTTTCT
*
2063082 TGAAACCATTTTTGATAGAATC
455 TGCAACCATTTTTGATAGAATC
* * *
2063104 AAAGTTTGTCTCTTAAATAAGACAAACATG---A-T-AT--TGAT-GC-ATTCTTTTAAGGATTA
1 AAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTCATACTAATCCCAATTCTTTTAAGGATTA
* * * ** * * * * * *
2063160 TGCATCGTAAACTTAGTCTTCTCATAACAATACATGATATTGATGCTTTAGTTTTGTAAAAAAAG
66 TGCACCATAAACATAGTCTTCTCATAAGGATAGATGAAATTGATGCTTTGGTTTCG-CAAGAAAG
* * * *
2063225 GCTTT-TATCCCACCAATTTTTGTAAAGTTTAAGG-TCATGCCTCAAATGAGAGAAACATGGATT
130 GCTTTCT-TCCCACCAATTTTTGTAAAGTCT-AGGTTCGTGCCTCAAGTGAGACAAACATGGATT
* * ** *
2063288 CCAGCAATGATCTTTTTTCATTTTGTGATTGGGCACTATAAACACATTCTCCTCATTAGGATAAA
193 CCAGTAATAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAA
* * * * *
2063353 TGTTATTGATTGTTTCCTTTTGCATGAAAATCTTTTCTTTGTCCTA-TTTCCATTAAAATTGATG
258 TGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCC-TTAAAATCGATG
* * **
2063417 TTTATCCCTTAAATAA-GCAAGCATTGATTCTCGTAACAACAGACAATATTTTCAGGATTGGGAA
322 TTTATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGCCTACAATATTTTCAGGATTGGGAA
* * * * *
2063481 CCAGAAACACGTTCACTTCATTACGGA-ACATGACATTGAAGCTTTGGGGTTGGAAGAAAAGCTT
387 CCAAAAACACATTCCCTTCATTAC-GATACATGACATTGATGCTTTGGGGTTGCAAGAAAAGCTT
* ** *
2063545 TTCTTACAACTGTTTTTGACTA-AAAC
451 TTCTTGCAACCATTTTTGA-TAGAATC
* * * * * *
2063571 AAAGTTTATCTCTTAAATAGGGCAAACAAGAATATTCATATTAAGCCCAATTCTTTTAAGGGA-T
1 AAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTCATACTAATCCCAATTCTTTTAA-GGATT
*
2063635 ATGCACCATAAACATAGTCTTCTTATAAGGATAGATGAAATTGATGCTTTGGTTTCGCAAGAAAG
65 ATGCACCATAAACATAGTCTTCTCATAAGGATAGATGAAATTGATGCTTTGGTTTCGCAAGAAAG
** * * *
2063700 GCTTTCTTTTCAACAATTTTTGTAGAGTCTAAGTTCGTGCCTCAAGTGAGACAAACATGGATTCC
130 GCTTTCTTCCCACCAATTTTTGTAAAGTCTAGGTTCGTGCCTCAAGTGAGACAAACATGGATTCC
* * * * *
2063765 AGAAAAAATCTTCATTCATTTTGTGATTAGGCTCTAAAAACACATTCTTCTCATTAGGATAAATG
195 AGTAATAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATG
* * *
2063830 ATATTGATGGTTTT-TTTTGCATGAAAAACTTTTGTTTGCTCTATTTTCCTTAAAATCGATGTTT
260 ATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCGATGTTT
* * *
2063894 ATCCCTTAAATAAGGCAA-CTATTGATTCTCATAACAGCCTACAATTTTTTCAAGATTGGGAAAC
325 ATCCCTTAAATAAGGCAAGC-ATTGATTCTCATAACAGCCTACAATATTTTCAGGATTGGGAACC
* * * ** *
2063958 AAAAACACA-----TTCATTAGGATGCATGACAATGATGCTTTGGGGTAACAAGACAAGCTTTTC
389 AAAAACACATTCCCTTCATTACGATACATGACATTGATGCTTTGGGGTTGCAAGAAAAGCTTTTC
*
2064018 TTGCAACTATTTTTGATAGAATC
454 TTGCAACCATTTTTGATAGAATC
* * * *
2064041 AAAGTTTGTCTCTTAAATAAGACAAACACGAATAGTCACACTAATCCCCATTCTTTTAAGGATTA
1 AAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTCATACTAATCCCAATTCTTTTAAGGATTA
* ** * * * *
2064106 TGCACCATAAACTTAGTCTTCTCATAACAATACATGATATTGATGCTTTAGTTTCGTAAGAAAGG
66 TGCACCATAAACATAGTCTTCTCATAAGGATAGATGAAATTGATGCTTTGGTTTCGCAAGAAAGG
* * * *
2064171 CTTTCATCCCACCAATTTTTGTAAAGTTTAAGGTT-GTGCCTCAAATGAGACAAACATGGATTCT
131 CTTTCTTCCCACCAATTTTTGTAAAGTCT-AGGTTCGTGCCTCAAGTGAGACAAACATGGATTCC
* * * * *
2064235 AGCAATGATCTGCATTCATTTTGTGATTGGGCACTATAAACACTTTCTCCTCATTAGGATAAATG
195 AGTAATAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATG
* * *
2064300 TTATTGATTGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCAATTTT-CTTAAAATCGATGTTT
260 ATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCGATGTTT
* * * * *
2064364 ATCCCTTATATAAGGCAAGCATTGATTCTCGTAACAACATACAATATGTTT-AGGATTGGGAACG
325 ATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGCCTACAATAT-TTTCAGGATTGGGAACC
* * * *
2064428 AGAAACACATTGCCTTCATTATGAAACATGACATTGATGCTTTGGGGTTGCAAGAAAAGCTTTTC
389 AAAAACACATTCCCTTCATTACGATACATGACATTGATGCTTTGGGGTTGCAAGAAAAGCTTTTC
**
2064493 TTGCAACTGTTTTTGATAGAATC
454 TTGCAACCATTTTTGATAGAATC
* * * *
2064516 AAAGTTTGTCTCGTAAATAGGACAAACAAGAATACTCATACTAAGCCCAATTCTTTTAAGGGTTA
1 AAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTCATACTAATCCCAATTCTTTTAAGGATTA
*
2064581 TGCACTATAAACATAGTCTTCT
66 TGCACCATAAACATAGTCTTCT
2064603 TATTTTCAGG
Statistics
Matches: 5518, Mismatches: 1046, Indels: 487
0.78 0.15 0.07
Matches are distributed among these distances:
459 3 0.00
460 256 0.05
461 53 0.01
462 19 0.00
463 90 0.02
465 1 0.00
467 195 0.04
468 181 0.03
469 15 0.00
470 359 0.07
471 41 0.01
472 3 0.00
473 82 0.01
474 95 0.02
475 1185 0.21
476 1555 0.28
477 812 0.15
478 10 0.00
480 7 0.00
481 20 0.00
482 8 0.00
483 3 0.00
484 17 0.00
485 5 0.00
486 2 0.00
488 18 0.00
489 10 0.00
490 7 0.00
491 8 0.00
492 11 0.00
493 5 0.00
494 2 0.00
495 1 0.00
496 5 0.00
497 2 0.00
499 4 0.00
500 3 0.00
501 4 0.00
502 1 0.00
503 3 0.00
504 4 0.00
505 3 0.00
506 3 0.00
507 8 0.00
508 3 0.00
509 13 0.00
510 15 0.00
511 6 0.00
512 18 0.00
513 11 0.00
514 9 0.00
515 4 0.00
517 3 0.00
518 3 0.00
519 5 0.00
520 3 0.00
521 5 0.00
522 3 0.00
523 4 0.00
525 3 0.00
526 10 0.00
527 13 0.00
528 18 0.00
529 5 0.00
530 20 0.00
531 10 0.00
532 3 0.00
533 9 0.00
534 3 0.00
535 3 0.00
536 6 0.00
537 1 0.00
538 1 0.00
539 4 0.00
540 3 0.00
541 3 0.00
543 2 0.00
544 5 0.00
545 1 0.00
546 2 0.00
547 5 0.00
548 9 0.00
549 8 0.00
550 7 0.00
551 10 0.00
552 16 0.00
554 4 0.00
555 4 0.00
556 17 0.00
557 3 0.00
558 8 0.00
559 21 0.00
560 6 0.00
564 51 0.01
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35
Consensus pattern (476 bp):
AAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTCATACTAATCCCAATTCTTTTAAGGATTA
TGCACCATAAACATAGTCTTCTCATAAGGATAGATGAAATTGATGCTTTGGTTTCGCAAGAAAGG
CTTTCTTCCCACCAATTTTTGTAAAGTCTAGGTTCGTGCCTCAAGTGAGACAAACATGGATTCCA
GTAATAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGA
TATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCGATGTTTA
TCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGCCTACAATATTTTCAGGATTGGGAACCAA
AAACACATTCCCTTCATTACGATACATGACATTGATGCTTTGGGGTTGCAAGAAAAGCTTTTCTT
GCAACCATTTTTGATAGAATC
Found at i:2062008 original size:89 final size:89
Alignment explanation
Indices: 2061857--2062034 Score: 347
Period size: 89 Copynumber: 2.0 Consensus size: 89
2061847 TTACTGATTG
2061857 TTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCGATGCTTATCCCTTATA
1 TTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCGATGCTTATCCCTTATA
2061922 TAAGGCAAGCGTTGATTCTCGTAA
66 TAAGGCAAGCGTTGATTCTCGTAA
2061946 TTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCGATGCTTATCCCTTATA
1 TTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCGATGCTTATCCCTTATA
*
2062011 TAAGGCAAGCGTTGATTCTTGTAA
66 TAAGGCAAGCGTTGATTCTCGTAA
2062035 CAGCCTATCT
Statistics
Matches: 88, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
89 88 1.00
ACGTcount: A:0.24, C:0.20, G:0.12, T:0.44
Consensus pattern (89 bp):
TTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCGATGCTTATCCCTTATA
TAAGGCAAGCGTTGATTCTCGTAA
Found at i:2066341 original size:42 final size:42
Alignment explanation
Indices: 2066280--2066411 Score: 176
Period size: 42 Copynumber: 3.1 Consensus size: 42
2066270 TAGCCCTCAA
* *
2066280 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAAG
* *
2066322 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAAG
* * * *
2066364 AGAGATAATAAAGAGAGGAGGGATGACAGGAGGAGGAGAGAAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGA-GAGACAAG
2066407 A-AGAT
1 AGAGAT
2066412 GGAAGAGTGA
Statistics
Matches: 79, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
42 72 0.91
43 7 0.09
ACGTcount: A:0.45, C:0.02, G:0.44, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAAG
Found at i:2071546 original size:61 final size:61
Alignment explanation
Indices: 2071451--2071571 Score: 224
Period size: 61 Copynumber: 2.0 Consensus size: 61
2071441 AATGTTTAGG
*
2071451 TCTTAAATAGGACAAACATGAATACTCATACTAATCGCAATTCTTTTAAGGATTACGCACT
1 TCTTAAATAGGACAAACATGAATACTCATACTAATCGCAATTCTTTTAAAGATTACGCACT
*
2071512 TCTTAACTAGGACAAACATGAATACTCATACTAATCGCAATTCTTTTAAAGATTACGCAC
1 TCTTAAATAGGACAAACATGAATACTCATACTAATCGCAATTCTTTTAAAGATTACGCAC
2071572 CATAAACATA
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
61 58 1.00
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.31
Consensus pattern (61 bp):
TCTTAAATAGGACAAACATGAATACTCATACTAATCGCAATTCTTTTAAAGATTACGCACT
Found at i:2073474 original size:476 final size:475
Alignment explanation
Indices: 2071512--2074626 Score: 3765
Period size: 476 Copynumber: 6.5 Consensus size: 475
2071502 ATTACGCACT
* * * *
2071512 TCTTAACTAGGACAAACATGAATACTCATACTAATCGCAATTCTTTTAAAGATTACGCACCATAA
1 TCTTAAATAGGACAAACATGAATACTCATACTAATCCCCATTCTTTTAAGGATTACGCACCATAA
* * * * *
2071577 ACATAGTCTTCTCATTAGGATAGACGAAATTGATACTTTGGTTTCGCAAGAAAAACTTTCTTGCC
66 ATATAGTCTTCTCATAAGGATAGACGAAATTGATGCTTTGGTTTCGCAAGAAAAGCTTTCTTCCC
* * * *
2071642 ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAAGGGCCAAACATGAATTCTAGTAATACTCT
131 ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATTAATTCTAGTAATA-TCT
* * *
2071707 TCATTCATTTTGTTATTAGGCAGTATAAACACATTCTCTTCATTAGGATAAATGATATTGATGGT
195 TCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGT
* * * * * *
2071772 TTTCTTTGGCATGAAAATCTTTTCTTTGTCCTATTTCCCTCAAAATTCATGTTTATCCCTTAAAA
260 TTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATTGATGTTTATCCCTTAAAT
* * * * * * * *
2071837 AAGGCAAGCATTGACTCTCATATCAACATACAATATTTTTAGGATTTGGAACCAGAAACACATTG
325 AAGGCAAGCATTGATTCTCATAACAGCCTACAATATTTTCAGGATTGGGAACCAAAAACACATTC
* * *
2071902 CCTTCATTATGAAACATGACATTGATGATTTGGGGTTGCAAGAAAAGCTTTTCTTGCAACTGTTT
390 CCTTCATTACGAAACATGACATTGATGCTTTGGGGTTGCAAGAAAAGCTTTTCTTGCAACCGTTT
*
2071967 TTGACAGAATCAAAGTTTGTC
455 TTGACAGAATCAAAGTTTATC
* * * * * * *
2071988 TCGTAAATAGGACAAACAAGAATACTCATACTAAGCCCAATTCTTTTAAGGGTTATGCACTATAA
1 TCTTAAATAGGACAAACATGAATACTCATACTAATCCCCATTCTTTTAAGGATTACGCACCATAA
* * * ** * **
2072053 ACATAGTCTTCTTATAAGGATAGACAAAATTGATGCTTTGGTTTCGCAAGAATGGCTTTATTCTT
66 ATATAGTCTTCTCATAAGGATAGACGAAATTGATGCTTTGGTTTCGCAAGAAAAGCTTTCTTCCC
* * * * *
2072118 ACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAGTGAGACAAACA-TAGATTCCAGAAAAAATC
131 ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATTA-ATTCTAG-TAATATC
* * *
2072182 TTCATTCATTTTGTGATTAGGCACTACAAACATATTCTTCTCATTAGGATAAATGAT-TTGATGG
194 TTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGG
* *
2072246 TTTTCTTTTGCATGATATTCTTTTCTTTGCCCTATTTTCCTTAAAATTGATGTTTATCCCTTCTT
259 TTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATTGATGTTTAT-CC--CTT
** * * * * * *
2072311 AAATAAGGCGGGTATTGATTCTCGTAATAGCCTACAATATTTTCAAGATTGGGAAACAAGAACAC
321 AAATAAGGCAAGCATTGATTCTCATAACAGCCTACAATATTTTCAGGATTGGGAACCAAAAACAC
* * * * **
2072376 ATTCCCTTCATTAGGATACATGACAATGATGCTTTAGGGTCACAAGAAAAGCTTTTCTTGCAACC
386 ATTCCCTTCATTACGAAACATGACATTGATGCTTTGGGGTTGCAAGAAAAGCTTTTCTTGCAACC
* * *
2072441 ATTTTTGATAGAATCAAAGTTTGT-
451 GTTTTTGACAGAATCAAAGTTTATC
* * * * * *
2072465 TAGTTAAATAAGACAAACACGAGTAGTCATACTAATCCCCATTCTTTTAAGGATTATGCACCATA
1 T-CTTAAATAGGACAAACATGAATACTCATACTAATCCCCATTCTTTTAAGGATTACGCACCATA
** * * * * * * *
2072530 AACT-TAGTCTTCTCATAACAATACATGATATTGATGCTTTAGTTTCGTAAGAAAGGCTTTCATC
65 AA-TATAGTCTTCTCATAAGGATAGACGAAATTGATGCTTTGGTTTCGCAAGAAAAGCTTTCTTC
** * ** *
2072594 TGACCAATTTTTGTAAAGTTTAAGGTT-GTGCCTCAAATGAGACAAACATGGATTCTAGCAATGA
129 CCACCAATTTTTGTAAAGTCTAA-GTTCGTGCCTCAAATGAGACAAACATTAATTCTAGTAAT-A
* *
2072658 TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTCGGATAAATGTTATTGAT
192 TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGAT
* * *
2072723 TGTTTTCTTTTGCCTGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAAATTGAAGTTTATCCCTT
257 GGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTT-AAAATTGATGTTTATCCCTT
* * * **
2072788 ATATAAGGCAAGCATTAATTCTCGTAACAGCCTACCTTATTTTCAGGATTGGGAACCAAAAACAC
321 AAATAAGGCAAGCATTGATTCTCATAACAGCCTACAATATTTTCAGGATTGGGAACCAAAAACAC
* * * * **
2072853 GTTCCCTTCATTACGATACAAGATATTGATGCTTTGGGGTTGCAAGAAAAGCTTTT-TTGGTACT
386 ATTCCCTTCATTACGAAACATGACATTGATGCTTTGGGGTTGCAAGAAAAGCTTTTCTTGCAAC-
* * *
2072917 CGTTTTTGATAGAATCAATGTTTATG
450 CGTTTTTGACAGAATCAAAGTTTATC
2072943 TCTTAAATAGGACAAACATGAATACTCATACTAATCCCCATTCTTTTAAGGATTACGCACCATAA
1 TCTTAAATAGGACAAACATGAATACTCATACTAATCCCCATTCTTTTAAGGATTACGCACCATAA
* * *
2073008 ATATAGTCTTCTCACT-AGGATAGACGAAATTGATACTTTGGTTTCGCAAGAAAAACTTTCTTGC
66 ATATAGTCTTCTCA-TAAGGATAGACGAAATTGATGCTTTGGTTTCGCAAGAAAAGCTTTCTTCC
* * * * *
2073072 CACCAATTTTTGCAAAGTCTAAGTTCGTGCATCAAAAGGGCCAAACATTAATTCTAGTAATACTC
130 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATTAATTCTAGTAATA-TC
* *
2073137 TTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCGTTAGGATAAATGATATAGATGG
194 TTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGG
* ** *
2073202 TCTTCTTTTGCATGAAAATCTTTTCTTTGTTCTATTTCCCTTAAAATTGATGTTTATCCCTTAAA
259 TTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATTGATGTTTATCCCTTAAA
* * * * * *
2073267 AAAGGCAAGCATTGGTTCTCGTAACAGCATACAATATTTTTAGGATTGAGAACCAAAAACACATT
324 TAAGGCAAGCATTGATTCTCATAACAGCCTACAATATTTTCAGGATTGGGAACCAAAAACACATT
*
2073332 CCCTTCATTACGAAACATGACATTGATGCCTTGGGGTTGCAAGAAAAGCTTTTCTTGCAACCGTT
389 CCCTTCATTACGAAACATGACATTGATGCTTTGGGGTTGCAAGAAAAGCTTTTCTTGCAACCGTT
*
2073397 TTTGACAGAATCAAAGTTTGTC
454 TTTGACAGAATCAAAGTTTATC
* * * * * * *
2073419 TCTTAAATAGGATAAACATGAATAATCATTCTAATACCCGTTCTATTATGGATTACGCACCATAA
1 TCTTAAATAGGACAAACATGAATACTCATACTAATCCCCATTCTTTTAAGGATTACGCACCATAA
* * * * * *
2073484 ACATAGTCTTCTCATTAGAATTGACGAAATTGATGCTTTGGTTTTGCAA-AAAAGGCTTTCTCCC
66 ATATAGTCTTCTCATAAGGATAGACGAAATTGATGCTTTGGTTTCGCAAGAAAA-GCTTTCTTCC
** * * * * * ** *
2073548 CACCAATTTTTGGGAAGCCTAAGTTTGTGCCTCGAGTGAGACAAGCATGGATTCCAGTAATAATC
130 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATTAATTCTAGTAAT-ATC
* * *
2073613 TTCATTCATTTTGTGATTAGGCACTAAAAACA-ATTCTCCTCATTTGGATAAATGATATTGATAG
194 TTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGG
* *
2073677 TTTTCTTTTGCATAAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATAGATGTTTATCCCTTAAA
259 TTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATTGATGTTTATCCCTTAAA
* * *
2073742 TAAGGCTAGCAATGATTCTCATAACAGCCTACAATATTTTCAGGATTGGGAACCAGAAACACATT
324 TAAGGCAAGCATTGATTCTCATAACAGCCTACAATATTTTCAGGATTGGGAACCAAAAACACATT
* *
2073807 -CCTTCATTATGAAACATGACATTGATGCTTTGGGGTTGCAAGAAAAGCTTTTCTTACAACCGTT
389 CCCTTCATTACGAAACATGACATTGATGCTTTGGGGTTGCAAGAAAAGCTTTTCTTGCAACCGTT
*
2073871 TTTAACAGAATCAAAGTTTATC
454 TTTGACAGAATCAAAGTTTATC
* * * * * * * *
2073893 TCTTAAATAGGGCAAACAAGAATACTCATACAAAGCCCAATTCTTTTAAGGGTTACACACTATAA
1 TCTTAAATAGGACAAACATGAATACTCATACTAATCCCCATTCTTTTAAGGATTACGCACCATAA
* * *
2073958 ATATAGTCTTCTTATAAGGATAGATGAAATTGATGCTTTGGTTTCGCACAG-AAGGCTTTCTTCC
66 ATATAGTCTTCTCATAAGGATAGACGAAATTGATGCTTTGGTTTCGCA-AGAAAAGCTTTCTTCC
* * * * * * * *
2074022 CACCAACTTTTGTAAAGTCTATGTTCGTGTCTCAAGTGAGACAAAC-TTGGATTCCAGAAAAATT
130 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATT-AATTCTAGTAATA-T
* * * * * * *
2074086 CTTCTTTCATTTAGTGATTAGGCACTAAAAACACATTCTTCTCATTACGATAAATGACATTGACG
193 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATG
* *
2074151 GTTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCGATGTTTATCCCTTAA
258 GTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATTGATGTTTATCCCTTAA
* * ** *
2074216 ATAAGGCAAGTATTGATTCTCATAACAGCCTACAATATTTTCAGGATTGGTAAATAAAAACGCAT
323 ATAAGGCAAGCATTGATTCTCATAACAGCCTACAATATTTTCAGGATTGGGAACCAAAAACACAT
* * * * * *
2074281 TCCCTTCATTAGGATACATGGCATTGATGCTTTGGGGTCGCAAGAAAAGCTTTTCTTGCAATCAT
388 TCCCTTCATTACGAAACATGACATTGATGCTTTGGGGTTGCAAGAAAAGCTTTTCTTGCAACCGT
* * *
2074346 TTTTTATAGAATCAAACTTTATC
453 TTTTGACAGAATCAAAGTTTATC
* ** * * * *
2074369 TCTTAAATAAGACAAACACAAATAGTCAAACTAATCCCCATTCTTTTAAGGATTATGCACCGTAA
1 TCTTAAATAGGACAAACATGAATACTCATACTAATCCCCATTCTTTTAAGGATTACGCACCATAA
* * ** * * * * * * *
2074434 GCT-TAGTCTTGTCATAACAATACATGATATTGATGCTTTAGTTTCGTAAAAAAAGGCTTTCATC
66 -ATATAGTCTTCTCATAAGGATAGACGAAATTGATGCTTTGGTTTCGCAAGAAAA-GCTTTCTTC
* * * * *
2074498 CCCCCAATTCTTGTAAAGTTTAAGGTCGTGCCTCAAATGAGACAAACA-TAGATTCTAGCAATGA
129 CCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATTA-ATTCTAGTAAT-A
* * *
2074562 TCTTCATTCATTTTGTGATTGGGCACTATAAACGCATTCTCCTCATTAGGATAAATGTTATTGAT
192 TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGAT
2074627 TGTGATGAAA
Statistics
Matches: 2244, Mismatches: 361, Indels: 67
0.84 0.14 0.03
Matches are distributed among these distances:
473 2 0.00
474 260 0.12
475 355 0.16
476 723 0.32
477 502 0.22
478 338 0.15
479 50 0.02
480 14 0.01
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35
Consensus pattern (475 bp):
TCTTAAATAGGACAAACATGAATACTCATACTAATCCCCATTCTTTTAAGGATTACGCACCATAA
ATATAGTCTTCTCATAAGGATAGACGAAATTGATGCTTTGGTTTCGCAAGAAAAGCTTTCTTCCC
ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATTAATTCTAGTAATATCTT
CATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTT
TTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATTGATGTTTATCCCTTAAATA
AGGCAAGCATTGATTCTCATAACAGCCTACAATATTTTCAGGATTGGGAACCAAAAACACATTCC
CTTCATTACGAAACATGACATTGATGCTTTGGGGTTGCAAGAAAAGCTTTTCTTGCAACCGTTTT
TGACAGAATCAAAGTTTATC
Found at i:2080002 original size:34 final size:34
Alignment explanation
Indices: 2079959--2080026 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
2079949 CTTTTGATGA
2079959 GCATGTGTTGCATTTGAAGTGCGTGCTGGAAGTC
1 GCATGTGTTGCATTTGAAGTGCGTGCTGGAAGTC
2079993 GCATGTGTTGCATTTGAAGTGCGTGCTGGAAGTC
1 GCATGTGTTGCATTTGAAGTGCGTGCTGGAAGTC
2080027 TTGAGGCATG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.18, C:0.15, G:0.35, T:0.32
Consensus pattern (34 bp):
GCATGTGTTGCATTTGAAGTGCGTGCTGGAAGTC
Found at i:2083001 original size:42 final size:42
Alignment explanation
Indices: 2082940--2083058 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
2082930 TAGCCCTCAA
* * *
2082940 AGAGAAAGAAGAGAGAGGAGGGAGGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
2082982 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
2083024 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
2083059 GAGAGAAGAA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.43, C:0.03, G:0.47, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:2083019 original size:24 final size:24
Alignment explanation
Indices: 2082949--2083034 Score: 76
Period size: 24 Copynumber: 3.8 Consensus size: 24
2082939 AAGAGAAAGA
* *
2082949 AGAGAGAGGAGGGAGGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
2082973 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
2082991 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
2083015 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
2083035 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.47, T:0.09
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:2096842 original size:476 final size:472
Alignment explanation
Indices: 2094951--2097031 Score: 2536
Period size: 476 Copynumber: 4.4 Consensus size: 472
2094941 GTTTTCATCA
*
2094951 AAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAACGATCTTCATTCATTTTGTGATT-G
1 AAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAG
* * * *
2095015 GGCACTATAAACACATTCTCCCCCTTAGGATAAATGATATTGATGGTTTCCTTTTGGATGAAAAT
66 GG-ACTATAAACACATTCTCCTCTTTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAAT
* * * * *
2095080 CTTTTCTTTACCCTATTTTCATTAAAATCGAAGTTCATCCCTTAAGTAAGGCAAGCTTTGATTCT
130 CTTTTCTTTGCCCTATTTTCCTTAAAATCGAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCC
* * * * * *
2095145 CTTAATAGTCTTCATTCTTTTCAGGATTAGGATCCAAAAACACATTCCCTTCATTAGGATACAAG
195 CTTAACAGTCTCCATTCTTTTCAGGATTGGGA-ACAAAAACACATT-CCTACATTAGGATACATG
* * * * * *
2095210 ACATTGACACTTTGTTGTTGCAAGAAAATGTTTTCCTTCCACCGATTTTGATAGAATCACAGTTT
258 ACATTGACGCTTTGGTGTCGCAAGAAAAGGTTTT-CTTTCACCGATTTTGATAGAATCAAAGTTT
* * *
2095275 GTCTCTTAATTAAGATAAACATGAATAGTCATACTAATCTCCATTCTTTTCAGGATTTGGCACCA
322 GTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTTGGCACCA
* * *
2095340 TAAACATAG-CATTCTCACTAGGATAGACGAAATTGATGCTTTGGTTTTGCAAGAAAAACTTTCT
387 TAAACATAGTC-TTCTCATTAGGATAGACGAAATTGATGCTTTGGTTTCGCAAGAAAGACTTTCT
* *
2095404 TGCCACAAATTTTTGTAGAGTCT
451 TCCCACAAATTTTTGCA-AGTCT
* * * * * * * *
2095427 ATGTTCGTGACTCAAAAGGGAAAAACATGGATTCCAGTAATGATCTTTATTCATTTTGCGATT-G
1 AAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAG
* * *
2095491 GGCACTATAAACACATTCTCCTCATTT-GGAGAAATGATATTGATGGTCTTCTTTTGGATGAAAA
66 GG-ACTATAAACACATTCTCCTC-TTTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAA
*
2095555 TCTTTTCTTTGCCATATTTTCCTTAAAATCGAAGTTCATCCCTTAAATAAGGCAAGCATTGATTC
129 TCTTTTCTTTGCCCTATTTTCCTTAAAATCGAAGTTCATCCCTTAAATAAGGCAAGCATTGATTC
* * * ** *
2095620 TCTTAACAATCTCCA-TCTTTTTCAGGATTGGG------ATC-C-TT--T-CGCTAGGACACATG
194 CCTTAACAGTCTCCATTC-TTTTCAGGATTGGGAACAAAAACACATTCCTACATTAGGATACATG
* * *
2095673 ACATTGACGCTTTGGTGTCGTAAGAAAAGGTTTTTCTTTCACCGTTTTTGAGAGAATCAAAGTTT
258 ACATTGACGCTTTGGTGTCGCAAGAAAAGG-TTTTCTTTCACCGATTTTGATAGAATCAAAGTTT
* *
2095738 GTCTCTTAAACAAGACAAACATGAATAGTCATACTAGTCCCCATTCTTTTCAGGATTTGGCACCA
322 GTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTTGGCACCA
* * ** *
2095803 TAAACGTAGCCTTCTCATTAGGATAGAC-AGAATTGATGCTTTGGTTTTACAAGAAAGGCTTTCT
387 TAAACATAGTCTTCTCATTAGGATAGACGA-AATTGATGCTTTGGTTTCGCAAGAAAGACTTTCT
* **
2095867 TCCCATAAATTTTTATAAAGTCT
451 TCCCACAAATTTTT-GCAAGTCT
* * *
2095890 AAGTTCATGCCTCAAATGAGACAAACATGGATTATAGTAATGATCTTCATTCATTTTGTAATTAG
1 AAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAG
*
2095955 GCACTATAAACACATTCTCCTCTTTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATC
66 GGACTATAAACACATTCTCCTCTTTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATC
* * *
2096020 TTTTCTTTACCCTATTTTCCTTAAAAT-TATAGTTCATCCTCTAAAATAAGGCAAGCATTGA-TC
131 TTTTCTTTGCCCTATTTTCCTTAAAATCGA-AGTTCATCC-CTTAAATAAGGCAAGCATTGATTC
* * * **
2096083 TCC-TAACATTCTCCATT-TTTTCAAGATTGGGAAAAAAAACACATTCCTATTGTTAGGATACAT
194 -CCTTAACAGTCTCCATTCTTTTCAGGATTGGGAACAAAAACACATTCCTA-CATTAGGATACAT
* * *
2096146 GACATGGATGCTTTGGTGTCGCAAGAAAAGGTTTTCCTTTCACCGATTTTGATAGAATCAAGGTT
257 GACATTGACGCTTTGGTGTCGCAAGAAAAGGTTTT-CTTTCACCGATTTTGATAGAATCAAAGTT
* * **
2096211 TGTCTCTTAATTAAGACAAGCATGAATAGTCATACTAATCCCCATTCGATTCAGGATTTGGCACC
321 TGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTTGGCACC
* ** * *
2096276 ATAAACATAGTCTTCTCTTTAGGACCGACAAAATTGATGCTTTGGATTCGCAAGAAAGACTTTCT
386 ATAAACATAGTCTTCTCATTAGGATAGACGAAATTGATGCTTTGGTTTCGCAAGAAAGACTTTCT
* * *
2096341 TGCCACTAATTTTGGCTAAGTCT
451 TCCCACAAATTTTTGC-AAGTCT
** *
2096364 AAGTTCGTGCCTGGAATGAGACAAACGTGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAG
1 AAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAG
* *
2096429 GGACTATAAACACATTCTCCTGTTTAGGAGAAATGATATTGATGGTTTTCTTTTGCATGAAAATC
66 GGACTATAAACACATTCTCCTCTTTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATC
* * ** *
2096494 TTTTCTTTGCCCTATTTTCCTTAAAACCGTAGTTTGTCCCATAAATAAGGCAAGCATTGATTCCC
131 TTTTCTTTGCCCTATTTTCCTTAAAATCGAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCCC
*
2096559 TTAATAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTACATTAGGATACATGA
196 TTAACAGTCTCCATTCTTTTCAGGATTGGGAA-CAAAAACACATT-CCTACATTAGGATACATGA
* * * * * * * * *
2096624 CATTGATGCTTTGGGGTTGCAAGAAAAGCTTTTCATGCAACTGTTTTTGACAGAATCAAAGTTTG
259 CATTGACGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTC-ACCGATTTTGATAGAATCAAAGTTTG
* ** * * * * * **
2096689 TCTCTTAAATAGGACAATTAAGAATACTCATACTAATCCCAATTCTTTTAAGGGTTACGCACCAT
323 TCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTTGGCACCAT
** * * *
2096754 AAACATAGTCTTCTTGTTCGGATAGACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTC
388 AAACATAGTCTTCTCATTAGGATAGACGAAATTGATGCTTTGGTTTCGCAAGAAAGACTTTCTTC
*
2096819 CCACCAATTTTTGCAATGTCT
453 CCACAAATTTTTGCAA-GTCT
* * * ** *
2096840 AAGTTCGTGCCTCAAGTGAGACTAACATGGATTAC-A-TAAATAATCTTCACCCATTTGGTGATT
1 AAGTTCGTGCCTCAAATGAGACAAACATGGATT-CTAGT-AATGATCTTCATTCATTTTGTGATT
* * * * *
2096903 AGGCACTA-AAACACATTCTCCTCATTAGTATAAATGATATTGCTGGTTTTCTTATGCATGAAAA
64 AGGGACTATAAACACATTCTCCTCTTTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAA
* * *
2096967 TCTTTTCTTTGTCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCAGTGATTC
129 TCTTTTCTTTGCCCTATTTTCCTTAAAATCGAAGTTCATCCCTTAAATAAGGCAAGCATTGATTC
2097032 TTATAAATGA
Statistics
Matches: 1382, Mismatches: 186, Indels: 75
0.84 0.11 0.05
Matches are distributed among these distances:
462 18 0.01
463 348 0.25
464 31 0.02
467 2 0.00
468 3 0.00
469 3 0.00
470 2 0.00
472 1 0.00
473 25 0.02
474 360 0.26
475 131 0.09
476 451 0.33
477 7 0.01
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.36
Consensus pattern (472 bp):
AAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAG
GGACTATAAACACATTCTCCTCTTTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATC
TTTTCTTTGCCCTATTTTCCTTAAAATCGAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCCC
TTAACAGTCTCCATTCTTTTCAGGATTGGGAACAAAAACACATTCCTACATTAGGATACATGACA
TTGACGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCACCGATTTTGATAGAATCAAAGTTTGTCT
CTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTTGGCACCATAAA
CATAGTCTTCTCATTAGGATAGACGAAATTGATGCTTTGGTTTCGCAAGAAAGACTTTCTTCCCA
CAAATTTTTGCAAGTCT
Found at i:2098352 original size:138 final size:138
Alignment explanation
Indices: 2098104--2098381 Score: 556
Period size: 138 Copynumber: 2.0 Consensus size: 138
2098094 CTGTTCTTAA
2098104 TTTTTGAGTCTTGTCTTGTTACATTCCTACTTGAGTGTGCTTTATCTTTCTTGTTAGCTTTTCTT
1 TTTTTGAGTCTTGTCTTGTTACATTCCTACTTGAGTGTGCTTTATCTTTCTTGTTAGCTTTTCTT
2098169 GATTGTCTTATTGGGTTCCTTAGTTTTGTTTTAGTGTTATCTTTGTTGGCCTCACTTAGTTGATG
66 GATTGTCTTATTGGGTTCCTTAGTTTTGTTTTAGTGTTATCTTTGTTGGCCTCACTTAGTTGATG
2098234 TCACTTGG
131 TCACTTGG
2098242 TTTTTGAGTCTTGTCTTGTTACATTCCTACTTGAGTGTGCTTTATCTTTCTTGTTAGCTTTTCTT
1 TTTTTGAGTCTTGTCTTGTTACATTCCTACTTGAGTGTGCTTTATCTTTCTTGTTAGCTTTTCTT
2098307 GATTGTCTTATTGGGTTCCTTAGTTTTGTTTTAGTGTTATCTTTGTTGGCCTCACTTAGTTGATG
66 GATTGTCTTATTGGGTTCCTTAGTTTTGTTTTAGTGTTATCTTTGTTGGCCTCACTTAGTTGATG
2098372 TCACTTGG
131 TCACTTGG
2098380 TT
1 TT
2098382 GTGGTTGATT
Statistics
Matches: 140, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
138 140 1.00
ACGTcount: A:0.12, C:0.15, G:0.19, T:0.54
Consensus pattern (138 bp):
TTTTTGAGTCTTGTCTTGTTACATTCCTACTTGAGTGTGCTTTATCTTTCTTGTTAGCTTTTCTT
GATTGTCTTATTGGGTTCCTTAGTTTTGTTTTAGTGTTATCTTTGTTGGCCTCACTTAGTTGATG
TCACTTGG
Found at i:2098856 original size:42 final size:42
Alignment explanation
Indices: 2098803--2098909 Score: 160
Period size: 42 Copynumber: 2.5 Consensus size: 42
2098793 AGAAAGAATT
* * *
2098803 GAGAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAGTAGA
1 GAGAGAAGGGATGATAGGAGGAGAGACAGGAGAAATAATAGA
*
2098845 GATAGAAGGGATGATAGGAGGAGAGACAGGAGAAATAATAGA
1 GAGAGAAGGGATGATAGGAGGAGAGACAGGAGAAATAATAGA
* *
2098887 GAGAGGAGGGATGACAGGAGGAG
1 GAGAGAAGGGATGATAGGAGGAG
2098910 GAGAGAAGAA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 58 1.00
ACGTcount: A:0.42, C:0.03, G:0.46, T:0.09
Consensus pattern (42 bp):
GAGAGAAGGGATGATAGGAGGAGAGACAGGAGAAATAATAGA
Found at i:2103154 original size:42 final size:42
Alignment explanation
Indices: 2103093--2103211 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
2103083 TAGCCCTCAA
* * *
2103093 AGAGAAAGAAGAGAGAGGAGGGAAGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
2103135 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
2103177 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
2103212 GAGAGAAGAA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.44, C:0.03, G:0.46, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:2111749 original size:475 final size:473
Alignment explanation
Indices: 2110852--2112351 Score: 2233
Period size: 475 Copynumber: 3.2 Consensus size: 473
2110842 GTTTTCATCA
* * * * *
2110852 CTTTTGCATGAAAATCTTTTCCTTTCCCTATTTTCATTAAAATCGTAGTTCATCCCATGAATAAG
1 CTTTTGCATGAAAATCTTTT-CTTACCCTATTTTCCTTAAAATCGAAGTTCATCCCTTAAATAAG
* * * *
2110917 GCAAGCATTGAGTCTCTTAACAATCTCCATT-TTTTCAAGG-TTAGGAACCAAAAACACTTTCCC
65 GCAAGCATTGATTCTCTTAACAGTCTCCATTCTTTTC-AGGATTGGGAACCAAAAACACATTCCC
* * *
2110980 TTCGTTAGGATACAGGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCCTTCTACCGTTTTT
129 TTCGTTAGGATACAAGACATTGACGCTTTGGTGTCGCAAGAAAAGGTTTTCCTTCCACCGTTTTT
*
2111045 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAGTCCCCATTTTTT
194 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAGTCCCCATTCTTT
* * *
2111110 TTAGGATTTGGCACCAAAAACATAGTCTTCTAATTAGGATAGACGAAATTGATGCTTTGGTTTAG
259 TTAGGATTTGGCACCATAAACATAGTCTTCTAATTAGGATAGACGAAATTGATGCTTCGATTT-G
2111175 CAAAAAAGGCTTTCTTCCCACAAGTTTTTGTAAAGTCTAAGTTCGTGCCTCAAAAGAGACAAACA
323 CAAAAAA-GCTTTCTTCCCACAAGTTTTTGTAAAGTCTAAGTTCGTGCCTCAAAAGAGACAAACA
* *
2111240 TAGATTCTAGTAATGATCTTCATTCATTTTGTGATTGGGCACTACAAACACATT-TCCCTCATTA
387 TGGATTCTAGTAATGATCTTCATTCATTTTGTGATTGGGCACTATAAACACATTCT-CCTCATTA
* *
2111304 GGATAAATGATATTGATGGTTTT
451 GGAGAAATGATATTGATGGTCTT
* * *
2111327 TTTTTAG-ATGAAAATCTTCTCTTGACCCTATTTTCCTTAAAATCGTAGTTCATCCCTTAAATAA
1 CTTTT-GCATGAAAATCTTTTCTT-ACCCTATTTTCCTTAAAATCGAAGTTCATCCCTTAAATAA
* **
2111391 GGCAAGCATTGATTCTCTTAACAGTCTTCATTCTTTTCAGGATTGGGAATGAAAAACACATTCCC
64 GGCAAGCATTGATTCTCTTAACAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCC
* * *
2111456 TTCGTTAGGATACAAGACATTGACGCTTTGGTGTTGCAAGAAAATGTTTTCCTTCCACCGATTTT
129 TTCGTTAGGATACAAGACATTGACGCTTTGGTGTCGCAAGAAAAGGTTTTCCTTCCACCGTTTTT
* * * * *
2111521 GATAGAGTCAAAGTTTGTCTCTTAATTAAGACAAACATGAATAGTCAGACTAATCTCCATTCTTT
194 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAGTCCCCATTCTTT
*
2111586 TTAGGATTT-GCACCATAAACATAGCCTTCTCAA-TAGGATAGACGAAATTGATGCTTCGATGTT
259 TTAGGATTTGGCACCATAAACATAGTCTTCT-AATTAGGATAGACGAAATTGATGCTTCGAT-TT
* * * * *
2111649 GCAAGAAAAACTTTTTTGCCACCAA-TTTTTGTAAAGTCTAAGTTCGTGACTCAAAAGGGACAAA
322 GCAA-AAAAGCTTTCTTCCCA-CAAGTTTTTGTAAAGTCTAAGTTCGTGCCTCAAAAGAGACAAA
*
2111713 CATGGATTCCAGTAATGATCTTCATTCATTTTGTGATTGGGCACTATAAACACATTCTCCTCATT
385 CATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTGGGCACTATAAACACATTCTCCTCATT
2111778 AGGAGAAATGATATTGATGGTCTT
450 AGGAGAAATGATATTGATGGTCTT
* * *
2111802 CTTTTGCGTGAAAATCTTTTCTTTGCTCTATTTTCCTTAAAATCGAAGTTCATCCCTTAAATAAG
1 CTTTTGCATGAAAATCTTTTC-TTACCCTATTTTCCTTAAAATCGAAGTTCATCCCTTAAATAAG
* *
2111867 GCAAGCATTGATTCTCTTAACAGTCTCCATCCTTTTCAGGATTGAGAACCAAAAACACATTCCCT
65 GCAAGCATTGATTCTCTTAACAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCT
* * * * *
2111932 TCGTTAGGATACAAGAAATTGACACTTTGGTGTCACAAGAAAGGGTTTTCCTTCCATCGTTTTTG
130 TCGTTAGGATACAAGACATTGACGCTTTGGTGTCGCAAGAAAAGGTTTTCCTTCCACCGTTTTTG
*
2111997 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAGACATGAATAGTCATACTAGTCCCCATTCTTTT
195 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAGTCCCCATTCTTTT
* * * * *
2112062 TAGGATTTGGCACCATAAACGTAGTCTCCTAATTAGGATAAACGAAATTGATGTTTTC-ATCTTA
260 TAGGATTTGGCACCATAAACATAGTCTTCTAATTAGGATAGACGAAATTGATG-CTTCGAT-TTG
* * * *
2112126 CAAAAAGGCTTTCTTCCCACAAGTTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAACCAT
323 CAAAAAAGCTTTCTTCCCACAAGTTTTTGTAAAGTCTAAGTTCGTGCCTCAAAAGAGACAAACAT
*
2112191 GGATTCTAGTAATGATCTTCATTCATTTTGTGATTGGGCACTATAAACACATTCTCCTCATTAAG
388 GGATTCTAGTAATGATCTTCATTCATTTTGTGATTGGGCACTATAAACACATTCTCCTCATTAGG
* *
2112256 AGAAATGATATTGATTGCCTT
453 AGAAATGATATTGATGGTCTT
2112277 CTTTTGCATGAAAATCTTTTCTTAGCCCTATTTTCCTTAAAATCGAAGTTCATCCCTTAAATAAG
1 CTTTTGCATGAAAATCTTTTCTTA-CCCTATTTTCCTTAAAATCGAAGTTCATCCCTTAAATAAG
2112342 GCAAGCATTG
65 GCAAGCATTG
2112352 TGATGAGAAC
Statistics
Matches: 922, Mismatches: 87, Indels: 32
0.89 0.08 0.03
Matches are distributed among these distances:
474 9 0.01
475 700 0.76
476 210 0.23
477 3 0.00
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.35
Consensus pattern (473 bp):
CTTTTGCATGAAAATCTTTTCTTACCCTATTTTCCTTAAAATCGAAGTTCATCCCTTAAATAAGG
CAAGCATTGATTCTCTTAACAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTT
CGTTAGGATACAAGACATTGACGCTTTGGTGTCGCAAGAAAAGGTTTTCCTTCCACCGTTTTTGA
TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAGTCCCCATTCTTTTT
AGGATTTGGCACCATAAACATAGTCTTCTAATTAGGATAGACGAAATTGATGCTTCGATTTGCAA
AAAAGCTTTCTTCCCACAAGTTTTTGTAAAGTCTAAGTTCGTGCCTCAAAAGAGACAAACATGGA
TTCTAGTAATGATCTTCATTCATTTTGTGATTGGGCACTATAAACACATTCTCCTCATTAGGAGA
AATGATATTGATGGTCTT
Found at i:2111781 original size:158 final size:159
Alignment explanation
Indices: 2111108--2112253 Score: 399
Period size: 159 Copynumber: 7.2 Consensus size: 159
2111098 TCCCCATTTT
* * * * * * *
2111108 TTTTAGGATTTGGCACCAAAAACATAGTCTTCTAATTAGGATAGACGAAATTGATGCTTTGGT-T
1 TTTTAGGATTGGGCACTATAAACACATTCTCCTCATTAGGATAGACGAAATTGATGCTTTGGTGT
* * * *
2111172 TAGCAA-AAAAGGCTTTCTTCCCA-CAAGTTTTTGTAAAGTCTAAGTTCGTGCCTCAAAAGAGAC
66 TAGCAAGAAAA-TCTTTCTTGCCACCAA-TTTTTGTAAAGTCTAAGTTCGTCCCTCAAAAGGGAC
* *
2111235 AAACATAGATTCTAGTAATGATCTTCATTCA
129 AAACATGGATTCCAGTAATGATCTTCATTCA
* * * * * **
2111266 TTTT-GTGATTGGGCACTACAAACACATT-TCCCTCATTAGGATAAATGATATTGATGGTTTTTT
1 TTTTAG-GATTGGGCACTATAAACACATTCT-CCTCATTAGGATAGACGAAATTGATGCTTTGGT
* * * * * * *
2111329 TTTAG-ATGAAAATCTTCTCTTGAC-CCTATTTTCCT-TAAAATCGT-AGTTCATCCCTTAAATA
64 GTTAGCAAGAAAATCTT-TCTTGCCACCAATTTT--TGTAAAGTC-TAAGTTCGTCCCTCAAA-A
* * * * *
2111390 AGG-CAAGCATTGATTCTC-TTAA-CAGTCTTCATTC-
124 GGGACAAACATGGATTC-CAGTAATGA-TCTTCATTCA
* * * * * * *
2111424 TTTTCAGGATTGGG-AATGAAAAACACATTC-CCTTCGTTAGGATACAAGACATTGACGCTTTGG
1 TTTT-AGGATTGGGCACT-ATAAACACATTCTCC-TCATTAGGATAGACGAAATTGATGCTTTGG
* * * * * * *
2111487 TGTT-GCAAGAAAATGTTTTCCTT-CCACCGA-TTTTGATAGAGTCAAAGTTTGTCTCTTAATTA
63 TGTTAGCAAGAAAAT-CTTT-CTTGCCACCAATTTTTG-TAAAGTCTAAGTTCGTCCCTCAA--A
* * * * *
2111549 A--GACAAACATGAATAGT-CAG-ACTAATCTCCATTCT
123 AGGGACAAACATGGAT--TCCAGTAATGATCTTCATTCA
* * * ** * * * *
2111584 TTTTAGGATT-TGCACCATAAACATAGCCTTCTCAATAGGATAGACGAAATTGATGCTTCGATGT
1 TTTTAGGATTGGGCACTATAAACACATTCTCCTCATTAGGATAGACGAAATTGATGCTTTGGTGT
* * **
2111648 T-GCAAGAAAAACTTTTTTGCCACCAATTTTTGTAAAGTCTAAGTTCGTGACTCAAAAGGGACAA
66 TAGCAAGAAAATCTTTCTTGCCACCAATTTTTGTAAAGTCTAAGTTCGTCCCTCAAAAGGGACAA
2111712 ACATGGATTCCAGTAATGATCTTCATTCA
131 ACATGGATTCCAGTAATGATCTTCATTCA
* * * * * *
2111741 TTTT-GTGATTGGGCACTATAAACACATTCTCCTCATTAGGAGAAATGATATTGATGGTCTT-CT
1 TTTTAG-GATTGGGCACTATAAACACATTCTCCTCATTAGGATAGACGAAATTGATGCT-TTGGT
* ** * * * * * *
2111804 -TTTGCGTGAAAATCTTTTCTTTG-C-TCTATTTTCCT-TAAAATCGAAGTTCATCCCTTAAATA
64 GTTAGCAAGAAAATC-TTTC-TTGCCACCAATTTT--TGTAAAGTCTAAGTTCGTCCCTCAAA-A
* * * * * * *
2111865 AGG-CAAGCATTGATTCTC-TTAA-CAGTCTCCA-TCC
124 GGGACAAACATGGATTC-CAGTAATGA-TCTTCATTCA
* * * * * * * **
2111899 TTTTCAGGATTGAGAACCAAAAACACATTC-CCTTCGTTAGGATACAAGAAATTGACACTTTGGT
1 TTTT-AGGATTGGGCACTATAAACACATTCTCC-TCATTAGGATAGACGAAATTGATGCTTTGGT
* * * * * * * *
2111963 GTCA-CAAGAAAGGGT-TTTCCTT-CCATC-GTTTTTGATAGAA-TCAAAGTTTGTCTCTTAAAT
64 GTTAGCAAGAAA--ATCTTT-CTTGCCACCAATTTTTG-TA-AAGTCTAAGTTCGTCCCTCAAA-
* * * * ** *
2112023 A-AGACAGACATGAATAGT-CA-TACT-AGTCCCCATTCT
123 AGGGACAAACATGGAT--TCCAGTAATGA-TCTTCATTCA
* * ** * * * * ** *
2112059 TTTTAGGATTTGGCACCATAAACGTAGTCTCCTAATTAGGATAAACGAAATTGATGTTTTCATCT
1 TTTTAGGATTGGGCACTATAAACACATTCTCCTCATTAGGATAGACGAAATTGATGCTTTGGTGT
** * * * * *
2112124 TA-CAA-AAAGGCTTTCTTCCCA-CAAGTTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACA
66 TAGCAAGAAAATCTTTCTTGCCACCAA-TTTTTGTAAAGTCTAAGTTCGTCCCTCAAAAGGGACA
* *
2112186 ACCATGGATTCTAGTAATGATCTTCATTCA
130 AACATGGATTCCAGTAATGATCTTCATTCA
2112216 TTTT-GTGATTGGGCACTATAAACACATTCTCCTCATTA
1 TTTTAG-GATTGGGCACTATAAACACATTCTCCTCATTA
2112254 AGAGAAATGA
Statistics
Matches: 716, Mismatches: 191, Indels: 163
0.67 0.18 0.15
Matches are distributed among these distances:
155 4 0.01
156 15 0.02
157 137 0.19
158 186 0.26
159 328 0.46
160 42 0.06
161 4 0.01
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.35
Consensus pattern (159 bp):
TTTTAGGATTGGGCACTATAAACACATTCTCCTCATTAGGATAGACGAAATTGATGCTTTGGTGT
TAGCAAGAAAATCTTTCTTGCCACCAATTTTTGTAAAGTCTAAGTTCGTCCCTCAAAAGGGACAA
ACATGGATTCCAGTAATGATCTTCATTCA
Found at i:2114267 original size:476 final size:475
Alignment explanation
Indices: 2113047--2115150 Score: 3095
Period size: 475 Copynumber: 4.4 Consensus size: 475
2113037 GTTGTCATCA
* * * * *
2113047 CATTGATTCTCTTAACAGTCTCCATCCTTTTCAAGATTGGGAACCAAAAACACATTTCTTTCGTT
1 CATTGATTCTCTTAACAATCTCCAT-TTTTTCAAGATTGGGAACCAAAACCACATTCCCTTCGTT
** * *
2113112 AGGATACAAAACAAT-GATGCTTTGGTGTCGCAAGAAAAGGTTTTCCTTCCACCGTTTTTGATAG
65 AGGATACATGAC-ATGGATGCTTTGGTGTCGCAAGAAAATGTTTTCCTTCCACCGATTTTGATAG
* *
2113176 AATCAAAGTTTGTCTCTTTAATAAGACAAACATGAATAGTCATACTAGTCCCCATTCTTTTTAGG
129 AATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAGTCCCCATTCTTTTCAGG
** *
2113241 ATTTGGCACCATAAACATAATCTTCTAATTAGGATAGACGAAATTGATGCTTTGGTTTCGCAAGA
194 ATTTGGCACCATAAACATAGCCTTCTAATTAGGATAGATGAAATTGATGCTTTGGTTTCGCAAGA
* *
2113306 AAGGCTTTCTTCCCACAAGTTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGAT
259 AAAGCTTTCTTCCCACAAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGAT
2113371 TCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAA
324 TCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAA
* * * * *
2113436 ATGATATTGATGGTTTTCTCTTGCATGAAAATCTTTTCTTTGCCCTAATTACCTTAAAATCGTAG
389 ATGATATTGATGGTTTTTTTTTGCATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCGTAG
* *
2113501 TTCATCCCATTAATAAAGCAAG
454 TTCATCCCATAAATAAGGCAAG
2113523 CATTGATTCTCTTAACAATCTCCATTTTTTCAAGATTGGGAACCAAAACCACATTCCCTTCGTTA
1 CATTGATTCTCTTAACAATCTCCATTTTTTCAAGATTGGGAACCAAAACCACATTCCCTTCGTTA
* * * *
2113588 GAATACAAGACATTGACGCTTTGGTGTCGCAAGAAAA-GATTTTCCTTCCACC-ATTTTTGATAG
66 GGATACATGACATGGATGCTTTGGTGTCGCAAGAAAATG-TTTTCCTTCCACCGA-TTTTGATAG
* * *
2113651 AATCAAAGTTTGTCTCTTAAATAAGACAAATATGTATAGTCATACTAGCCCCCATTCCTTTT-AG
129 AATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAGTCCCCATT-CTTTTCAG
* * *
2113715 GATTTGGCACCATAAAAATGGTCC-TCTAATTAGGATAGATGAAATTGATGCTTTGGTTTTGCAA
193 GATTTGGCACCATAAACATAG-CCTTCTAATTAGGATAGATGAAATTGATGCTTTGGTTTCGCAA
** *
2113779 -AAAAGGCTTTCTTCCCATGAGTTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATG
257 GAAAA-GCTTTCTTCCCACAAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATG
*
2113843 GATTCTAGTAATGATCTTCATTCATTTTGTGATTGGGCACTATAAACACATTCTCCTCATTAGGA
321 GATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGA
*
2113908 TAAATGATATTGATGGTTTTTTTTTGGATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCG
386 TAAATGATATTGATGGTTTTTTTTTGCATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCG
2113973 TAGTTCATCCCATAAAATAAGGCAAG
451 TAGTTCATCCCAT-AAATAAGGCAAG
2113999 CATTGATTGC-CTTAACAATCTCCATTTTTTCAAGA-TGAGGAACCAAAACCACATTCCCTTCGT
1 CATTGATT-CTCTTAACAATCTCCATTTTTTCAAGATTG-GGAACCAAAACCACATTCCCTTCGT
* *
2114062 TAGGATACATGACATGGATTCTTTGGTGTCGCAAGAAATTGTTTTCCTTCCACCGATTTTGATAG
64 TAGGATACATGACATGGATGCTTTGGTGTCGCAAGAAAATGTTTTCCTTCCACCGATTTTGATAG
* * * * *
2114127 AATCAAAGTTTGTCTCTTAATTAAGACAACCATGAATAATCACACTAATCCCCATTCTTTTCAGG
129 AATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAGTCCCCATTCTTTTCAGG
* *
2114192 ATTTGGCATCATAAACATAGCCTTCTCATTAGGATAGATGAAATTGATGCTTTGGTTTCGCAAGA
194 ATTTGGCACCATAAACATAGCCTTCTAATTAGGATAGATGAAATTGATGCTTTGGTTTCGCAAGA
* * * * * * *
2114257 AAAACTTTCTTGCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAAAGGGATAAACATGGAT
259 AAAGCTTTCTTCCCACAAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGAT
* * *
2114322 TCTAGTAATGATCTTCATTCATTTTGTGATTGGGAACTATAAACACATTCTACTCATTAGGATAA
324 TCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAA
* *
2114387 ATGATATTGATGGTTTTGTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCGTAG
389 ATGATATTGATGGTTTTTTTTTGCATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCGTAG
*
2114452 TTCATCCCATAAATATGGCAAG
454 TTCATCCCATAAATAAGGCAAG
* * *
2114474 CATTGATTCTCTTAACAATCTCCATTTTTTCAAGATTGGGAACCAAAGA-CATATTCCTTTCCTT
1 CATTGATTCTCTTAACAATCTCCATTTTTTCAAGATTGGGAACCAAA-ACCACATTCCCTTCGTT
* *
2114538 AGGATACATGACATGGATGCTTTGGTGTCGCAAGAAAATGTTTTCCTTCCACCGTTTTTGAGAGA
65 AGGATACATGACATGGATGCTTTGGTGTCGCAAGAAAATGTTTTCCTTCCACCGATTTTGATAGA
* * * *
2114603 ATCAAAGTTTGTCTCTTAAAGAAGACAAACACGAATAGTCATACTAGTCCCCATTCTTATAAGGA
130 ATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAGTCCCCATTCTTTTCAGGA
* * * *
2114668 TTTGGAACCATAAACATAGCCTTCTCATTAGGATAGA-CAGAATTGATGCTTTCGTTTCGCAAGA
195 TTTGGCACCATAAACATAGCCTTCTAATTAGGATAGATGA-AATTGATGCTTTGGTTTCGCAAGA
* * * * * * *
2114732 AAGGCTTTCTTCCTACAAATTTTTATAAAGTCTAAGTTAGTGCCTCGAATGAGAAAAACAAGGAT
259 AAAGCTTTCTTCCCACAAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGAT
* *
2114797 TATAGTAATGATCTTCATTCATTTTGTAATTAGGCACTATAAACACATTCTCCTCATTAGGATAA
324 TCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAA
*
2114862 ATGATATTGATGGTTTTCTTTTATG--TGAAAATCTTTTCTTTACCCTATTTTGCTTAAAATCGT
389 ATGATATTGATGGTTTT-TTTT-TGCATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCGT
2114925 AGTTCATCCCATAAAATAAGGCAAG
452 AGTTCATCCCAT-AAATAAGGCAAG
* *
2114950 CACTGATTGC-CTTAACAATCTCCATTTTTTCAAGA-TGAGGAACCAAAGACC-CATTCCCTTCA
1 CATTGATT-CTCTTAACAATCTCCATTTTTTCAAGATTG-GGAACCAAA-ACCACATTCCCTTCG
* * *
2115012 TTAGGATACTTGACATGGATGCTTTGGTGTTGCAAGAAAATGTTTTCCTTCCACTGATTTTGATA
63 TTAGGATACATGACATGGATGCTTTGGTGTCGCAAGAAAATGTTTTCCTTCCACCGATTTTGATA
* * * * * *
2115077 GAGTCAAAGTTTGTCTCTTAATTAAGACAACCATGAATAATCACACTAATCCCCATTCTTTTCAG
128 GAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAGTCCCCATTCTTTTCAG
2115142 GATTTGGCA
193 GATTTGGCA
2115151 TCTGATGACA
Statistics
Matches: 1477, Mismatches: 127, Indels: 48
0.89 0.08 0.03
Matches are distributed among these distances:
474 8 0.01
475 820 0.56
476 638 0.43
477 11 0.01
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (475 bp):
CATTGATTCTCTTAACAATCTCCATTTTTTCAAGATTGGGAACCAAAACCACATTCCCTTCGTTA
GGATACATGACATGGATGCTTTGGTGTCGCAAGAAAATGTTTTCCTTCCACCGATTTTGATAGAA
TCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAGTCCCCATTCTTTTCAGGAT
TTGGCACCATAAACATAGCCTTCTAATTAGGATAGATGAAATTGATGCTTTGGTTTCGCAAGAAA
AGCTTTCTTCCCACAAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTC
TAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAT
GATATTGATGGTTTTTTTTTGCATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCGTAGTT
CATCCCATAAATAAGGCAAG
Found at i:2114920 original size:951 final size:951
Alignment explanation
Indices: 2113047--2115152 Score: 3275
Period size: 951 Copynumber: 2.2 Consensus size: 951
2113037 GTTGTCATCA
* * * * *
2113047 CATTGATT-CTCTTAACAGTCTCCATCCTTTTCAAGATTG-GGAACCAAAAACACATTTCTTTCG
1 CATTGATTGC-CTTAACAATCTCCAT-TTTTTCAAGA-TGAGGAACCAAAACCACATTCCCTTCG
** * *
2113110 TTAGGATACAAAACAAT-GATGCTTTGGTGTCGCAAGAAAAGGTTTTCCTTCCACCGTTTTTGAT
63 TTAGGATACATGAC-ATGGATGCTTTGGTGTCGCAAGAAAATGTTTTCCTTCCACCGATTTTGAT
* * * * *
2113174 AGAATCAAAGTTTGTCTCTTTAA-TAAGACAAACATGAATAGTCATACTAGTCCCCATTCTTTTT
127 AGAATCAAAGTTTGTCTC-TTAATTAAGACAACCATGAATAATCACACTAATCCCCATTCTTTTC
* *
2113238 AGGATTTGGCACCATAAACATAATCTTCTAATTAGGATAGACGAAATTGATGCTTTGGTTTCGCA
191 AGGATTTGGCATCATAAACATAACCTTCTAATTAGGATAGACGAAATTGATGCTTTGGTTTCGCA
** * *
2113303 AGAAAGGCTTTCTTCCCACAAGTTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATG
256 AGAAAAACTTTCTTCCCACAAGTTTTTGTAAAGTCTAAGTTCATGCCTCAAAAGAGACAAACATG
* *
2113368 GATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGA
321 GATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGAACTATAAACACATTCTACTCATTAGGA
2113433 TAAATGATATTGATGGTTTTCTCTTGCATGAAAATCTTTTCTTTGCCCTAATTACCTTAAAATCG
386 TAAATGATATTGATGGTTTTCTCTTGCATGAAAATCTTTTCTTTGCCCTAATTACCTTAAAATCG
*
2113498 TAGTTCATCCCATTAATAAAGCAAGCATTGATTCTCTTAACAATCTCCATTTTTTCAAGATTGGG
451 TAGTTCATCCCATAAATAAAGCAAGCATTGATTCTCTTAACAATCTCCATTTTTTCAAGATTGGG
* *
2113563 AACCAAAACCACATTCCCTTCGTTAGAATACAAGACATTGACGCTTTGGTGTCGCAAGAAAAGAT
516 AACCAAAACCACATTCCCTTCCTTAGAATACAAGACATGGACGCTTTGGTGTCGCAAGAAAAGAT
* * * * *
2113628 TTTCCTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAATATGTATAGTCA
581 TTTCCTTCCACCATTTTTGAGAGAATCAAAGTTTGTCTCTTAAAGAAGACAAACACGAATAGTCA
* * * *
2113693 TACTAGCCCCCATTCCTTTTAGGATTTGGCACCATAAAAATGGTCCTCTAATTAGGATAGATGAA
646 TACTAGCCCCCATTCCTTTAAGGATTTGGAACCATAAAAATAGTCCTCTAATTAGGATAGAAGAA
* * ** * * *
2113758 ATTGATGCTTTGGTTTTGCAAAAAAGGCTTTCTTCCCATGAGTTTTTGTAAAGTCTAAGTTCGTG
711 ATTGATGCTTTCGTTTCGCAAAAAAGGCTTTCTTCCCACAAATTTTTATAAAGTCTAAGTTAGTG
* * * * *
2113823 CCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTGGGCACTATAA
776 CCTCAAATGAGAAAAACAAGGATTATAGTAATGATCTTCATTCATTTTGTAATTAGGCACTATAA
2113888 ACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTTTTTTGGATGAAAATCTTTTCTTTA
841 ACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTTTTTTGGATGAAAATCTTTTCTTTA
2113953 CCCTATTTTCCTTAAAATCGTAGTTCATCCCATAAAATAAGGCAAG
906 CCCTATTTTCCTTAAAATCGTAGTTCATCCCATAAAATAAGGCAAG
2113999 CATTGATTGCCTTAACAATCTCCATTTTTTCAAGATGAGGAACCAAAACCACATTCCCTTCGTTA
1 CATTGATTGCCTTAACAATCTCCATTTTTTCAAGATGAGGAACCAAAACCACATTCCCTTCGTTA
* *
2114064 GGATACATGACATGGATTCTTTGGTGTCGCAAGAAATTGTTTTCCTTCCACCGATTTTGATAGAA
66 GGATACATGACATGGATGCTTTGGTGTCGCAAGAAAATGTTTTCCTTCCACCGATTTTGATAGAA
2114129 TCAAAGTTTGTCTCTTAATTAAGACAACCATGAATAATCACACTAATCCCCATTCTTTTCAGGAT
131 TCAAAGTTTGTCTCTTAATTAAGACAACCATGAATAATCACACTAATCCCCATTCTTTTCAGGAT
* * *
2114194 TTGGCATCATAAACATAGCCTTCTCATTAGGATAGATGAAATTGATGCTTTGGTTTCGCAAGAAA
196 TTGGCATCATAAACATAACCTTCTAATTAGGATAGACGAAATTGATGCTTTGGTTTCGCAAGAAA
* * *
2114259 AACTTTCTTGCCACCAA-TTTTTGTAAAGTCTAAGTTCATGCCTCAAAAGGGATAAACATGGATT
261 AACTTTCTTCCCA-CAAGTTTTTGTAAAGTCTAAGTTCATGCCTCAAAAGAGACAAACATGGATT
*
2114323 CTAGTAATGATCTTCATTCATTTTGTGATTGGGAACTATAAACACATTCTACTCATTAGGATAAA
325 CTAGTAATGATCTTCATTCATTTTGTGATTAGGAACTATAAACACATTCTACTCATTAGGATAAA
* * * *
2114388 TGATATTGATGGTTTTGTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCGTAGT
390 TGATATTGATGGTTTTCTCTTGCATGAAAATCTTTTCTTTGCCCTAATTACCTTAAAATCGTAGT
**
2114453 TCATCCCATAAATATGGCAAGCATTGATTCTCTTAACAATCTCCATTTTTTCAAGATTGGGAACC
455 TCATCCCATAAATAAAGCAAGCATTGATTCTCTTAACAATCTCCATTTTTTCAAGATTGGGAACC
* * * * *
2114518 AAAGA-CATATTCCTTTCCTTAGGATACATGACATGGATGCTTTGGTGTCGCAAGAAAATG-TTT
520 AAA-ACCACATTCCCTTCCTTAGAATACAAGACATGGACGCTTTGGTGTCGCAAGAAAA-GATTT
*
2114581 TCCTTCCACCGTTTTTGAGAGAATCAAAGTTTGTCTCTTAAAGAAGACAAACACGAATAGTCATA
583 TCCTTCCACCATTTTTGAGAGAATCAAAGTTTGTCTCTTAAAGAAGACAAACACGAATAGTCATA
* * *
2114646 CTAGTCCCCATT-CTTATAAGGATTTGGAACCATAAACATAG-CCTTCTCATTAGGATAGACAG-
648 CTAGCCCCCATTCCTT-TAAGGATTTGGAACCATAAAAATAGTCC-TCTAATTAGGATAGA-AGA
* *
2114708 AATTGATGCTTTCGTTTCGCAAGAAAGGCTTTCTTCCTACAAATTTTTATAAAGTCTAAGTTAGT
710 AATTGATGCTTTCGTTTCGCAAAAAAGGCTTTCTTCCCACAAATTTTTATAAAGTCTAAGTTAGT
*
2114773 GCCTCGAATGAGAAAAACAAGGATTATAGTAATGATCTTCATTCATTTTGTAATTAGGCACTATA
775 GCCTCAAATGAGAAAAACAAGGATTATAGTAATGATCTTCATTCATTTTGTAATTAGGCACTATA
2114838 AACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTAT-G-TGAAAATCTTTTCT
840 AACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTT-TTTT-TGGATGAAAATCTTTTCT
*
2114901 TTACCCTATTTTGCTTAAAATCGTAGTTCATCCCATAAAATAAGGCAAG
903 TTACCCTATTTTCCTTAAAATCGTAGTTCATCCCATAAAATAAGGCAAG
* *
2114950 CACTGATTGCCTTAACAATCTCCATTTTTTCAAGATGAGGAACCAAAGACC-CATTCCCTTCATT
1 CATTGATTGCCTTAACAATCTCCATTTTTTCAAGATGAGGAACCAAA-ACCACATTCCCTTCGTT
* * *
2115014 AGGATACTTGACATGGATGCTTTGGTGTTGCAAGAAAATGTTTTCCTTCCACTGATTTTGATAGA
65 AGGATACATGACATGGATGCTTTGGTGTCGCAAGAAAATGTTTTCCTTCCACCGATTTTGATAGA
*
2115079 GTCAAAGTTTGTCTCTTAATTAAGACAACCATGAATAATCACACTAATCCCCATTCTTTTCAGGA
130 ATCAAAGTTTGTCTCTTAATTAAGACAACCATGAATAATCACACTAATCCCCATTCTTTTCAGGA
2115144 TTTGGCATC
195 TTTGGCATC
2115153 TGATGACAAC
Statistics
Matches: 1059, Mismatches: 82, Indels: 27
0.91 0.07 0.02
Matches are distributed among these distances:
950 13 0.01
951 1008 0.95
952 36 0.03
953 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (951 bp):
CATTGATTGCCTTAACAATCTCCATTTTTTCAAGATGAGGAACCAAAACCACATTCCCTTCGTTA
GGATACATGACATGGATGCTTTGGTGTCGCAAGAAAATGTTTTCCTTCCACCGATTTTGATAGAA
TCAAAGTTTGTCTCTTAATTAAGACAACCATGAATAATCACACTAATCCCCATTCTTTTCAGGAT
TTGGCATCATAAACATAACCTTCTAATTAGGATAGACGAAATTGATGCTTTGGTTTCGCAAGAAA
AACTTTCTTCCCACAAGTTTTTGTAAAGTCTAAGTTCATGCCTCAAAAGAGACAAACATGGATTC
TAGTAATGATCTTCATTCATTTTGTGATTAGGAACTATAAACACATTCTACTCATTAGGATAAAT
GATATTGATGGTTTTCTCTTGCATGAAAATCTTTTCTTTGCCCTAATTACCTTAAAATCGTAGTT
CATCCCATAAATAAAGCAAGCATTGATTCTCTTAACAATCTCCATTTTTTCAAGATTGGGAACCA
AAACCACATTCCCTTCCTTAGAATACAAGACATGGACGCTTTGGTGTCGCAAGAAAAGATTTTCC
TTCCACCATTTTTGAGAGAATCAAAGTTTGTCTCTTAAAGAAGACAAACACGAATAGTCATACTA
GCCCCCATTCCTTTAAGGATTTGGAACCATAAAAATAGTCCTCTAATTAGGATAGAAGAAATTGA
TGCTTTCGTTTCGCAAAAAAGGCTTTCTTCCCACAAATTTTTATAAAGTCTAAGTTAGTGCCTCA
AATGAGAAAAACAAGGATTATAGTAATGATCTTCATTCATTTTGTAATTAGGCACTATAAACACA
TTCTCCTCATTAGGATAAATGATATTGATGGTTTTTTTTTGGATGAAAATCTTTTCTTTACCCTA
TTTTCCTTAAAATCGTAGTTCATCCCATAAAATAAGGCAAG
Found at i:2116853 original size:159 final size:159
Alignment explanation
Indices: 2115853--2120659 Score: 1268
Period size: 158 Copynumber: 30.4 Consensus size: 159
2115843 TCAGCATCAT
* * **
2115853 AAACATAGCCTTCTCATTAGGATAGATGAAATTGATGCTTTGGTTTCGCAAGAAAA-ACTTT-CT
1 AAACATATCCTTCTCATTAGGATACATGAAATTGATGCTTTGGTTTCGCAAGAAAATGTTTTCCT
* * *
2115916 TGCCACCAATTTTTG-TA-AAGTCAAAGTTCGTGC-CTCAAA-ATGGACAAACATGGAT-TCTAG
66 T-CCACCAATTTTTGATAGAA-TCAAAGTTCGT-CTCTTAAATA-AGACAAACATGAATATC-A-
* * * * * *
2115976 TAATGATCTTCATTCATTTT--GTGATTGGGCACTAT
125 TACTAATCTCCATTC-TTTTCAG-GATTAGGCACCAA
* * * * * * ** * * ** *
2116011 AAACACATTCTACTCATTAGGATAAATGATATTGATGGTTTTTTTTTGCATGAAAATCATTTCTT
1 AAACATATCCTTCTCATTAGGATACATGAAATTGATGCTTTGGTTTCGCAAGAAAATGTTTTCCT
* ** *** * ** * * * * * * * * *
2116076 TGC-CTTATTTTCCTTAAAATCGTAGTTCATCCCATAAATATGGCAAGCATTGATTCTCTTCAC-
66 TCCACCAATTTTTGATAGAATCAAAGTTCGTCTCTTAAATAAGACAAACA-TGAATATCAT-ACT
* * *
2116139 AATCTCCATT-TTTTCAAGATTGGGAACCAA
129 AATCTCCATTCTTTTCAGGATTAGGCACCAA
* * * *
2116169 AGACACAT-TCCCTTC-C-TTAGGATACATGACATGGATGCTTTAGTGTCGCAAGAAAATGTTTT
1 A-A-ACATAT-CCTTCTCATTAGGATACATGAAATTGATGCTTTGGTTTCGCAAGAAAATGTTTT
* * ** *
2116231 CCTTCCACC-GTTTTTGAGAGAATCAAAGTTTATCTCTTAAAGAAGACAAACATGAATATATCAT
63 CCTTCCACCAATTTTTGATAGAATCAAAGTTCGTCTCTTAAATAAGACAAACATG-A-ATATCAT
* * * * *
2116295 ACTAGTCCCCATTCTTCTCAGGATTTA-GAACCAT
126 ACTAATCTCCATTCTTTTCAGGA-TTAGGCACCAA
* * * * * * * * *
2116329 AAACGTAGCCTTCTCATTAGGATAGATGGAACTGAAGCTTTTGTTTCGCAAG-AAAGGCTTT-CT
1 AAACATATCCTTCTCATTAGGATACATGAAATTGATGCTTTGGTTTCGCAAGAAAATGTTTTCCT
* * * ** * * *
2116392 TCCTACAAATTTTTGA-A-ATGTCTAAG-TCGTGC-CTCGAATGAGGA-AAACAAGGATTAT-AG
66 TCC-ACCAATTTTTGATAGA-ATCAAAGTTCGT-CTCTTAAAT-AAGACAAAC-ATGAATATCA-
* * * ** * * *
2116451 TAATGATCTTCATTCATTTT-ATAAATAGGCACTAT
125 TACTAATCTCCATTC-TTTTCAGGATTAGGCACCAA
* * * * * * * ** * ** *
2116486 AAACACATTCTCCTCGTAAGGATA-ATTGATATTGATGGTTTTCTTTTGCCTGAAAAT-TTTTCT
1 AAACATATCCTTCTCATTAGGATACA-TGAAATTGATGCTTTGGTTTCGCAAGAAAATGTTTTCC
* * *** * * * * * * * * *
2116549 TTAC-CCTATTTTCCTTAAAATCATAGTTCATCCCATAAAATAAGGCAAACATTGATTGTCTTAA
65 TTCCACCAATTTTTGATAGAATCAAAGTTCGTCTC-TTAAATAAGACAAACA-TGAATATCAT-A
* *
2116613 C-AATCTCCATT-TTTTCAAGATTAGGAACCAA
127 CTAATCTCCATTCTTTTCAGGATTAGGCACCAA
* * * * * *
2116644 AAACACATTCCCTT-T-GTTAGGATACATGACATGGATGCATTGGTGTCGCAAGAAAATGTTTTC
1 AAACATA-T-CCTTCTCATTAGGATACATGAAATTGATGCTTTGGTTTCGCAAGAAAATGTTTTC
* * * *
2116707 CTTCCACCGA-TTTAGATAGAATCAAAGTTTGTCTCTTAATTAAGACAAACATGAATAGTCATAC
64 CTTCCACCAATTTTTGATAGAATCAAAGTTCGTCTCTTAAATAAGACAAACATGAATA-TCATAC
* * *
2116771 TAATCCCCATTCTTTTTAGGATTTGGCACCAA
128 TAATCTCCATTCTTTTCAGGATTAGGCACCAA
* * * * **
2116803 AAACATAGCCTTCTCGTTAGGATAGACGAAATTGATGCTTTGGTTTCGCAAGAAAA-ACTTT-CT
1 AAACATATCCTTCTCATTAGGATACATGAAATTGATGCTTTGGTTTCGCAAGAAAATGTTTTCCT
* * ** * *
2116866 TGCCACCAATTTTTG-TA-AAGTCTAAGTTCGTGTCGCAAA-AGGGAAAAACATGAAT-TCTAGT
66 T-CCACCAATTTTTGATAGAA-TCAAAGTTCGTCTCTTAAATA-AGACAAACATGAATATC-A-T
* * *
2116927 AATAATCTTCATTCATTTT--GTGATTAGGCACTATA
126 ACTAATCTCCATTC-TTTTCAG-GATTAGGCACCA-A
* * * * * ** * * * * *
2116962 AATGCAT-T-CTCCTCATTAGGATAAATGACATTGATGGTTTTCTTTTGGATGAAAATCTTTTCT
1 AA-ACATATCCTTCTCATTAGGATACATGAAATTGATGCTTTGGTTTCGCAAGAAAATGTTTTCC
* * *** * * * * *
2117025 TTAC-CCTATTTTCCTTAAAATTAAAGTTCGTCCCTTAAATAAGGCAAGCAATG-AT-TCTATTA
65 TTCCACCAATTTTTGATAGAATCAAAGTTCGTCTCTTAAATAAGACAAAC-ATGAATATC-A-TA
* * * * *
2117087 ATAGTCTCCATTCTTTTCAAGATTGGGAACCAA
127 CTAATCTCCATTCTTTTCAGGATTAGGCACCAA
* * * * * *
2117120 AAACACATTCCCT-TCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGGTTTTCC
1 AAACATA-TCCTTCTCATTAGGATACATGAAATTGATGCTTTGGTTTCGCAAGAAAATGTTTTCC
* * * *
2117184 TTCCACC-ATTTTTGAGAGAATCAAAGTTTGTCTCTTAAACAAGACGAACATGAATAGTCATACT
65 TTCCACCAATTTTTGATAGAATCAAAGTTCGTCTCTTAAATAAGACAAACATGAATA-TCATACT
** * * *
2117248 TGTCCCCATTCTTTTCAGGATTTGGCACCAT
129 AATCTCCATTCTTTTCAGGATTAGGCACCAA
* * * * * * * * * *
2117279 AAACGTAGCCTTCTCATTAGGATAGACGGAATTGATGCTTTTGTTTTGTAAG-AAAGGCTTT-CT
1 AAACATATCCTTCTCATTAGGATACATGAAATTGATGCTTTGGTTTCGCAAGAAAATGTTTTCCT
* * ** * * * *
2117342 TCCTACAAATTTTTG-TA-AAGTCTAAGTTCGTGC-CTCGAATGAGAAAAACACGGATTAT-AGT
66 TCC-ACCAATTTTTGATAGAA-TCAAAGTTCGT-CTCTTAAATAAGACAAACA-TGAATATCA-T
* * * * * * *
2117403 AATGATCTTCAATCATTTT--GTAATTAGGCACTAT
126 ACTAATCTCCATTC-TTTTCAG-GATTAGGCACCAA
* * * * * * ** * * * *
2117437 AAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGTATA-AAAATCTTTTCT
1 AAACATATCCTTCTCATTAGGATACATGAAATTGATGCTTTGGTTTCGCA-AGAAAATGTTTTCC
* * *** * ** * * * * * * *
2117501 TTAC-CCTATTTTCCTTAAAATCGTAGTTCATCCCATAAAATAAGGCAAACATTGATTCTCTTAA
65 TTCCACCAATTTTTGATAGAATCAAAGTTCGTCTC-TTAAATAAGACAAACA-TGAATATCAT-A
*
2117565 C-AATCTCCATT-TTTTCAAGATTAGGCACCAA
127 CTAATCTCCATTCTTTTCAGGATTAGGCACCAA
* * * * *
2117596 AAACACATTCCCT-TCATTAGGATACATGACATGGATGCTTTGGTGTCGCAAGAAAATGTTTTCC
1 AAACATA-TCCTTCTCATTAGGATACATGAAATTGATGCTTTGGTTTCGCAAGAAAATGTTTTCC
* * * * *
2117660 TTCCACCGATTTTTGATAGAGTCAAAGTTTGTCTCTTAATTAAGACAAACATGAATAGCCATACT
65 TTCCACCAATTTTTGATAGAATCAAAGTTCGTCTCTTAAATAAGACAAACATGAATA-TCATACT
* * *
2117725 AATCTCCATTCTTTTTAGGATTTGGCACCAT
129 AATCTCCATTCTTTTCAGGATTAGGCACCAA
* * * * *
2117756 AAACATATCCCTCTCATTTGGATAGACGAAATTGATGCTTTGGTTTCGCAAGAAAA--CTTT-CT
1 AAACATATCCTTCTCATTAGGATACATGAAATTGATGCTTTGGTTTCGCAAGAAAATGTTTTCCT
* * * * * *
2117818 AGCCACAAATTTTTG-TA-AAGTCTAAGTTTGTGC-CTCAAA-AAGGAAAAACATGAAT-TCTAG
66 -TCCACCAATTTTTGATAGAA-TCAAAGTTCGT-CTCTTAAATAA-GACAAACATGAATATC-A-
* * ** * * * *
2117878 TAATAATATTGATTCATTT-GGTGATTAGGCACTAT
125 TACTAATCTCCATTCTTTTCAG-GATTAGGCACCAA
* * * * * * ** * * * * *
2117913 AAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGGATGAAAATCTTTTCTT
1 AAACATATCCTTCTCATTAGGATACATGAAATTGATGCTTTGGTTTCGCAAGAAAATGTTTTCCT
* * *** * * * * * * * * *
2117978 TAC-CCTATTTTCCTTAAAAT-AGAAGTTCATCCCTTAAATAAGGCAAGCTTTGATTCTCTTAAC
66 TCCACCAATTTTTGATAGAATCA-AAGTTCGTCTCTTAAATAAGACAAAC-ATGAATATCAT-AC
* * * * *
2118041 -AGTCTTCATTCCTTTCAGGATTGGGAACCAA
128 TAATCTCCATTCTTTTCAGGATTAGGCACCAA
* * * * * * *
2118072 AAACACATTCCCTT-T-GTTAGGATACAAG-AATTAATGCTTTGGTGTCGCAAAAAAATGTTTCC
1 AAACATA-T-CCTTCTCATTAGGATACATGAAATTGATGCTTTGGTTTCGCAAGAAAATGTTTTC
* * * * *
2118134 CTTCCATCGA-TTTTGATAGAATCAAAGTTTGTCTCTTAATTAAGACAACCATGAATTATCATAC
64 CTTCCACCAATTTTTGATAGAATCAAAGTTCGTCTCTTAAATAAGACAAACATGAA-TATCATAC
* * *
2118198 TAATCCCCATTCTTTTCAGGATTTGGCACCAT
128 TAATCTCCATTCTTTTCAGGATTAGGCACCAA
* * * **
2118230 AAACATAGCCTTCTCATTAGGATAGATAAAATTGATGCTTTGGTTTCGCAAGAAAA--ACTTCCT
1 AAACATATCCTTCTCATTAGGATACATGAAATTGATGCTTTGGTTTCGCAAGAAAATGTTTTCCT
* * *
2118293 TGCCACAAATTTTTG-TA-AAGTCTAAGTTCGTGC-CTCAAA-AGAGACAAACATCG-AT-TCTA
66 T-CCACCAATTTTTGATAGAA-TCAAAGTTCGT-CTCTTAAATA-AGACAAACAT-GAATATC-A
* * * * *
2118352 TTAATGATCTTCATT-TATTT-TGTGATT-GGACACTATA
125 -TACTAATCTCCATTCT-TTTCAG-GATTAGG-CACCA-A
* * * * * ** *** * *
2118389 AACACCT-TCC-CCTCATTAGGATAAATGATATTGATGGTTTTCTGTT-GGTTGAAAATCTTCTC
1 AA-ACATATCCTTCTCATTAGGATACATGAAATTGATGCTTTGGT-TTCGCAAGAAAATGTTTTC
* * * *** * * * * * * * * * * *
2118451 TTTAC-CCTATTTTCCTTAAAATCGAAGTTCATCCCCTAAATAAGGCAAGCATTGATTCTCTTAA
64 CTTCCACCAATTTTTGATAGAATCAAAGTTCGTCTCTTAAATAAGACAAACA-TGAATATCATAC
* * * *
2118515 AAATCTCCATT-TTTTCAAGATT-GGGAACAA
128 TAATCTCCATTCTTTTCAGGATTAGGCACCAA
* * * * * * * *
2118545 AAACACATTCC-TATCGTTAGGATACATGACATGGATGCTTTGGTGTCACAAGAAAAGGTTTTCC
1 AAACATA-TCCTTCTCATTAGGATACATGAAATTGATGCTTTGGTTTCGCAAGAAAATGTTTTCC
* * * * * *
2118609 TTTCACCGA-TTTTGATAGAATCAAGGTTTGCCTCTTAATTAAGACAAACATGAATAGTCATACT
65 TTCCACCAATTTTTGATAGAATCAAAGTTCGTCTCTTAAATAAGACAAACATGAATA-TCATACT
* * * *
2118673 AATCCCCATTCTATTCAGGATTTGGCACC-T
129 AATCTCCATTCTTTTCAGGATTAGGCACCAA
* * * * ** * *
2118703 AAATATAGT-CTTCTCTTTAGGACAGACAAAATTGATGCATTGGATTT-GCAAG-AAA-GACTTT
1 AAACATA-TCCTTCTCATTAGGATACATGAAATTGATGCTTTGG-TTTCGCAAGAAAATG-TTTT
* * * * * * * * *
2118764 CATGCCACCAATTTTTGCTA-AGTCTAAGTTCGTGC-CTCAAATGAGACAAACTTGGAT-TCTAG
63 CCTTCCACCAATTTTTGATAGAATCAAAGTTCGT-CTCTTAAATAAGACAAACATGAATATC-A-
* * * * * *
2118826 TAATGATCTTCATTCATTTTGA-TATTAGGGA-CAA
125 TACTAATCTCCATTC-TTTTCAGGATTAGGCACCAA
* * * * * * * * ** * *
2118860 TAACCATATTCTCCTTATTTAGGAGAAATGATATTGATGGTTTTCTCTT-GCATGAAAATCTTTT
1 -AAACATATCCTTCTCA-TTAGGATACATGAAATTGATGCTTTGGT-TTCGCAAGAAAATGTTTT
* * * *** * * ** * * * * * * * * *
2118924 CTTTGC-CCTATTTTCCTTAAAACCGTAGTTCATCCCCTAAATAAGGCAAGCGTTGATTCTCTTA
63 CCTTCCACCAATTTTTGATAGAATCAAAGTTCGTCTCTTAAATAAGACAAAC-ATGAATATCAT-
*
2118988 AC-AATCTCCATT-TTTTCAAGATTAGGCACCAA
126 ACTAATCTCCATTCTTTTCAGGATTAGGCACCAA
* * * *
2119020 AAACACATTCCCT-TCATTAGGATACATGACATGGATGCTTTGGTGTT-GCAAGAAAATGTTTTC
1 AAACATA-TCCTTCTCATTAGGATACATGAAATTGATGCTTTGGT-TTCGCAAGAAAATGTTTTC
** * * * *
2119083 CTTCCACTGA-TTTTGATAGAGTCAAAGTTTGTCTCTTAATTAAGACAAATATGAATAGTCATAC
64 CTTCCACCAATTTTTGATAGAATCAAAGTTCGTCTCTTAAATAAGACAAACATGAATA-TCATAC
* * * *
2119147 TAATCCCCATTCTTTTTAGGATTTGGCACCAT
128 TAATCTCCATTCTTTTCAGGATTAGGCACCAA
* * * * * *
2119179 AAACATAGCCCTCTCATTGGGATAGACGAAATTGATGCTTTGGTTTCGCAAGAAAA--CTTT-CT
1 AAACATATCCTTCTCATTAGGATACATGAAATTGATGCTTTGGTTTCGCAAGAAAATGTTTTCCT
** * * * * *
2119241 AGGCACAAATTTTTG-TA-AAGTCTAAGTTCGTGC-CTCAAA-AGGGAAAAACATGAAT-TCTAG
66 -TCCACCAATTTTTGATAGAA-TCAAAGTTCGT-CTCTTAAATA-AGACAAACATGAATATC-A-
* * ** * * *
2119301 TAATAATATTGATTCATTTT-ATGATTAGGCACTAT
125 TACTAATCTCCATTC-TTTTCAGGATTAGGCACCAA
* * * * * * ** * * * *
2119336 AAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGGATGAAAATCTTTT-CT
1 AAACATATCCTTCTCATTAGGATACATGAAATTGATGCTTTGGTTTCGCAAGAAAATGTTTTCCT
* *** * * * * * * * * * *
2119400 T-TACCATATTTTCCTTAAAATCGAAGTTCATCCCCTAAATAAGGCAAGCATTGATTCTCTTAAC
66 TCCACCA-ATTTTTGATAGAATCAAAGTTCGTCTCTTAAATAAGACAAACA-TGAATATCAT-AC
* * *
2119464 -AATCTCCATT-TTTTCAAGATT-GGGAACAA
128 TAATCTCCATTCTTTTCAGGATTAGGCACCAA
* * * ** * * * *
2119493 AAACACATTCC-TATCGTTAGGATACATGACGTGGATGCTTTAGTGTCGCAAGAAAAGGTTTTCC
1 AAACATA-TCCTTCTCATTAGGATACATGAAATTGATGCTTTGGTTTCGCAAGAAAATGTTTTCC
* * * * *
2119557 TTTCACCGA-TTTTGATAGAATCAAAGTTTGTCTCTTAATTAAGACAACCATGAATAATCATACT
65 TTCCACCAATTTTTGATAGAATCAAAGTTCGTCTCTTAAATAAGACAAACATGAAT-ATCATACT
* *
2119621 AATCCCCATTCTTTTCAGGATTTA-GCACCAT
129 AATCTCCATTCTTTTCAGGA-TTAGGCACCAA
* * * **
2119652 AAACATAGCCTTCTCATTAGGATAGATAAAATTGATGCTTTGGTTTCGCAAGAAAA-ACTTT-CT
1 AAACATATCCTTCTCATTAGGATACATGAAATTGATGCTTTGGTTTCGCAAGAAAATGTTTTCCT
* * * *
2119715 TGCCACAAATTTTTG-TA-AAGTCTAAGTTTGTGC-CTCAAA-AGAGACAAACAT-AGAT-TCTA
66 T-CCACCAATTTTTGATAGAA-TCAAAGTTCGT-CTCTTAAATA-AGACAAACATGA-ATATC-A
* * * * **
2119774 GTAATGATCTTCATT-TATTT-TGTGATT-GGACATTATA
125 -TACTAATCTCCATTCT-TTTCAG-GATTAGG-CACCA-A
* * * * ** * * * * * *
2119811 AACACAT-TCC-CCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGGATGAAAATCTTCTCT
1 AA-ACATATCCTTCTCATTAGGATACATGAAATTGATGCTTTGGTTTCGCAAGAAAATGTTTTCC
* * *** * * ** * * * * * *
2119874 TTAC-CCTATTTTCCTTAAAATCGAAGTTAATCCCCTAAATAAGGCAAGCATTGATTCTCATAAC
65 TTCCACCAATTTTTGATAGAATCAAAGTTCGTCTCTTAAATAAGACAAACA-TGAATATCAT-AC
* * * *
2119938 -AATCTCCA-T-TTTTCAAGATTGGGAACAAAA
128 TAATCTCCATTCTTTTCAGGATTAGGCAC-CAA
* * * * * * *
2119968 AAACACATTCC-TATCGTTAGGATACATGACATGGATGCTTTGGTGTCGCAAGAAAAGGTTTTCC
1 AAACATA-TCCTTCTCATTAGGATACATGAAATTGATGCTTTGGTTTCGCAAGAAAATGTTTTCC
* * * * * *
2120032 TTTCACCGA-TTTTGATAGAATCAAGGTTTGCCTCTTAATTAAGACAAACATGAATAGTCATACT
65 TTCCACCAATTTTTGATAGAATCAAAGTTCGTCTCTTAAATAAGACAAACATGAATA-TCATACT
* * *
2120096 AATCCCCATTCTATTCAGGATTTGGCACCAA
129 AATCTCCATTCTTTTCAGGATTAGGCACCAA
* * * * ** * *
2120127 AAATATAGT-CTTCTCTTTAGGACAGAAAAAATTGATGCTTTGGATTCGCAAG-AAA-GACTTTC
1 AAACATA-TCCTTCTCATTAGGATACATGAAATTGATGCTTTGGTTTCGCAAGAAAATG-TTTTC
* * * * * * * * * * * * *
2120189 ATGCCACCAATTTTTGCTA-AGTCTAAGTTCGTGTCTCAAATGAGACAAACTTGGATTTTAGTAA
64 CTTCCACCAATTTTTGATAGAATCAAAGTTCGTCTCTTAAATAAGACAAACATGAATATCA-TAC
* * * * *
2120253 TGATCTTCATTCATTTTGA-TATTAGGGA-CAA
128 TAATCTCCATTC-TTTTCAGGATTAGGCACCAA
* * * * * * * ** * * *
2120284 TAAACATATTCTCCTTATTTAGGAGAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTC
1 -AAACATATCCTTCTCA-TTAGGATACATGAAATTGATGCTTTGGTTTCGCAAGAAAATGTTTTC
* * * *** * * ** * * * * * * *
2120349 TTTGC-CCTATTTTCCTTAAAACCGTAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCTTAA
64 CTTCCACCAATTTTTGATAGAATCAAAGTTCGTCTCTTAAATAAGACAAACA-TGAATATCAT-A
* * * *
2120413 C-AATCTCCATTTTTTTCAAGATTGGGAACCAA
127 CTAATCTCCATTCTTTTCAGGATTAGGCACCAA
* * * * * *
2120445 AAACACATTCCCT-TCATTAGGATACATGACACTAATGCTTTGGGGTT-GCAAGAAAA-GCTTTT
1 AAACATA-TCCTTCTCATTAGGATACATGAAATTGATGCTTT-GGTTTCGCAAGAAAATG-TTTT
* * *
2120507 -CTTGCAACC-GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAT
63 CCTT-CCACCAATTTTTGATAGAATCAAAGTTCGTCTCTTAAATAAGACAAACATGAATA-TCAT
* *
2120570 ACTAATCTCCATTCTTTTCAGGATTTGGCACCAT
126 ACTAATCTCCATTCTTTTCAGGATTAGGCACCAA
* * * * * *
2120604 AAACATAGT-TTTCTAATTGGGACAGAT-AGAATTGATGCTTTGGATTCGCAAGAAAA
1 AAACATA-TCCTTCTCATTAGGATACATGA-AATTGATGCTTTGGTTTCGCAAGAAAA
2120660 ACTTTGTTGC
Statistics
Matches: 3261, Mismatches: 1106, Indels: 563
0.66 0.22 0.11
Matches are distributed among these distances:
155 7 0.00
156 50 0.02
157 590 0.18
158 1135 0.35
159 1093 0.34
160 351 0.11
161 33 0.01
162 2 0.00
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35
Consensus pattern (159 bp):
AAACATATCCTTCTCATTAGGATACATGAAATTGATGCTTTGGTTTCGCAAGAAAATGTTTTCCT
TCCACCAATTTTTGATAGAATCAAAGTTCGTCTCTTAAATAAGACAAACATGAATATCATACTAA
TCTCCATTCTTTTCAGGATTAGGCACCAA
Found at i:2117213 original size:476 final size:475
Alignment explanation
Indices: 2115850--2120675 Score: 6742
Period size: 475 Copynumber: 10.2 Consensus size: 475
2115840 TCATCAGCAT
*
2115850 CATAAACATAGCCTTCTCATTAGGATAGATGAAATTGATGCTTTGGTTTCGCAAGAAAAACTTTC
1 CATAAACATAGCCTTCTCATTAGGATAGACGAAATTGATGCTTTGGTTTCGCAAGAAAAACTTTC
* * *
2115915 TTGCCACCAATTTTTGTAAAGTCAAAGTTCGTGCCTCAAAATG-GACAAACATGGATTCTAGTAA
66 TTGCCACAAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAA-GAGAAAAACATGGATTCTAGTAA
* *
2115979 TGATCTTCATTCATTTTGTGATTGGGCACTATAAACACATTCTACTCATTAGGATAAATGATATT
130 TGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATT
* * * * * *
2116044 GATGGTTTTTTTTTGCATGAAAATCATTTCTTTGCCTTATTTTCCTTAAAATCGTAGTTCATCCC
195 GATGGTTTTCTTTTGGATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCGAAGTTCATCCC
* * * *
2116109 ATAAATATGGCAAGCATTGATTCTCTTCACAATCTCCATTTTTTCAAGATTGGGAACCAAAGACA
260 TTAAATAAGGCAAGCATTGATTCTCTTAACAATCTCCATTTTTTCAAGATTGGGAACCAAAAACA
* * *
2116174 CATTCCCTTCCTTAGGATACATGACATGGATGCTTTAGTGTCGCAAGAAAATGTTTTCCTTCCAC
325 CATTCCCTTCGTTAGGATACATGACATGGATGCTTTGGTGTCGCAAGAAAAGGTTTTCCTTCCAC
* * * ** * *
2116239 CGTTTTTGAGAGAATCAAAGTTTATCTCTTAAAGAAGACAAACATGAATATATCATACTAGTCCC
390 CGATTTTGATAGAATCAAAGTTTGTCTCTTAATTAAGACAAACATGAATA-GTCATACTAATCCC
* * *
2116304 CATTCTTCTCAGGATTTAGAAC
454 CATTCTTTTCAGGATTTGGCAC
* * * * * * **
2116326 CATAAACGTAGCCTTCTCATTAGGATAGATGGAACTGAAGCTTTTGTTTCGCAAGAAAGGCTTTC
1 CATAAACATAGCCTTCTCATTAGGATAGACGAAATTGATGCTTTGGTTTCGCAAGAAAAACTTTC
* * * * *
2116391 TT-CCTACAAATTTTTG-AAATGTCTAAG-TCGTGCCTCGAATGAGGAAAACAAGGATTATAGTA
66 TTGCC-ACAAATTTTTGTAAA-GTCTAAGTTCGTGCCTCAAAAGAGAAAAACATGGATTCTAGTA
* * * * * *
2116453 ATGATCTTCATTCATTTTATAAATAGGCACTATAAACACATTCTCCTCGTAAGGATAATTGATAT
129 ATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATAT
**
2116518 TGATGGTTTTCTTTTGCCTGAAAAT-TTTTCTTTACCCTATTTTCCTTAAAATC-ATAGTTCATC
194 TGATGGTTTTCTTTTGGATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCGA-AGTTCATC
* * * *
2116581 CCATAAAATAAGGCAAACATTGATTGTCTTAACAATCTCCATTTTTTCAAGATTAGGAACCAAAA
258 CC-TTAAATAAGGCAAGCATTGATTCTCTTAACAATCTCCATTTTTTCAAGATTGGGAACCAAAA
* * *
2116646 ACACATTCCCTTTGTTAGGATACATGACATGGATGCATTGGTGTCGCAAGAAAATGTTTTCCTTC
322 ACACATTCCCTTCGTTAGGATACATGACATGGATGCTTTGGTGTCGCAAGAAAAGGTTTTCCTTC
*
2116711 CACCGATTTAGATAGAATCAAAGTTTGTCTCTTAATTAAGACAAACATGAATAGTCATACTAATC
387 CACCGATTTTGATAGAATCAAAGTTTGTCTCTTAATTAAGACAAACATGAATAGTCATACTAATC
*
2116776 CCCATTCTTTTTAGGATTTGGCAC
452 CCCATTCTTTTCAGGATTTGGCAC
* *
2116800 CAAAAACATAGCCTTCTCGTTAGGATAGACGAAATTGATGCTTTGGTTTCGCAAGAAAAACTTTC
1 CATAAACATAGCCTTCTCATTAGGATAGACGAAATTGATGCTTTGGTTTCGCAAGAAAAACTTTC
* * * * *
2116865 TTGCCACCAATTTTTGTAAAGTCTAAGTTCGTGTCGCAAAAGGGAAAAACATGAATTCTAGTAAT
66 TTGCCACAAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAAGAGAAAAACATGGATTCTAGTAAT
* ** *
2116930 AATCTTCATTCATTTTGTGATTAGGCACTATAAATGCATTCTCCTCATTAGGATAAATGACATTG
131 GATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTG
** *
2116995 ATGGTTTTCTTTTGGATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATTAAAGTTCGTCCCT
196 ATGGTTTTCTTTTGGATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCGAAGTTCATCCCT
* * * *
2117060 TAAATAAGGCAAGCAATGATTCTATTAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACA
261 TAAATAAGGCAAGCATTGATTCTCTTAACAATCTCCATT-TTTTCAAGATTGGGAACCAAAAACA
* * *
2117125 CATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGGTTTTCCTTCCAC
325 CATTCCCTTCGTTAGGATACATGACATGGATGCTTTGGTGTCGCAAGAAAAGGTTTTCCTTCCAC
* ** * **
2117190 C-ATTTTTGAGAGAATCAAAGTTTGTCTCTTAAACAAGACGAACATGAATAGTCATACTTGTCCC
390 CGA-TTTTGATAGAATCAAAGTTTGTCTCTTAATTAAGACAAACATGAATAGTCATACTAATCCC
2117254 CATTCTTTTCAGGATTTGGCAC
454 CATTCTTTTCAGGATTTGGCAC
* * * * * **
2117276 CATAAACGTAGCCTTCTCATTAGGATAGACGGAATTGATGCTTTTGTTTTGTAAGAAAGGCTTTC
1 CATAAACATAGCCTTCTCATTAGGATAGACGAAATTGATGCTTTGGTTTCGCAAGAAAAACTTTC
* * * *
2117341 TT-CCTACAAATTTTTGTAAAGTCTAAGTTCGTGCCTCGAATGAGAAAAACACGGATTATAGTAA
66 TTGCC-ACAAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAAGAGAAAAACATGGATTCTAGTAA
* *
2117405 TGATCTTCAATCATTTTGTAATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATT
130 TGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATT
* * *
2117470 GATGGTTTTCTTTTGTATAAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCGTAGTTCATCCC
195 GATGGTTTTCTTTTGGATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCGAAGTTCATCCC
* * * *
2117535 ATAAAATAAGGCAAACATTGATTCTCTTAACAATCTCCATTTTTTCAAGATTAGGCACCAAAAAC
260 -TTAAATAAGGCAAGCATTGATTCTCTTAACAATCTCCATTTTTTCAAGATTGGGAACCAAAAAC
* *
2117600 ACATTCCCTTCATTAGGATACATGACATGGATGCTTTGGTGTCGCAAGAAAATGTTTTCCTTCCA
324 ACATTCCCTTCGTTAGGATACATGACATGGATGCTTTGGTGTCGCAAGAAAAGGTTTTCCTTCCA
* * *
2117665 CCGATTTTTGATAGAGTCAAAGTTTGTCTCTTAATTAAGACAAACATGAATAGCCATACTAATCT
389 CCGA-TTTTGATAGAATCAAAGTTTGTCTCTTAATTAAGACAAACATGAATAGTCATACTAATCC
*
2117730 CCATTCTTTTTAGGATTTGGCAC
453 CCATTCTTTTCAGGATTTGGCAC
* * *
2117753 CATAAACATATCCCTCTCATTTGGATAGACGAAATTGATGCTTTGGTTTCGCAAG-AAAACTTTC
1 CATAAACATAGCCTTCTCATTAGGATAGACGAAATTGATGCTTTGGTTTCGCAAGAAAAACTTTC
* * *
2117817 TAGCCACAAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAAA-AGGAAAAACATGAATTCTAGTAA
66 TTGCCACAAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAAGA-GAAAAACATGGATTCTAGTAA
* * * *
2117881 TAATATTGATTCATTTGGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATT
130 TGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATT
*
2117946 GATGGTTTTCTTTTGGATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATAGAAGTTCATCCC
195 GATGGTTTTCTTTTGGATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCGAAGTTCATCCC
* * * * *
2118011 TTAAATAAGGCAAGCTTTGATTCTCTTAACAGTCTTCATTCCTTTCAGGATTGGGAACCAAAAAC
260 TTAAATAAGGCAAGCATTGATTCTCTTAACAATCTCCATT-TTTTCAAGATTGGGAACCAAAAAC
* * ** * * *
2118076 ACATTCCCTTTGTTAGGATACAAGA-ATTAATGCTTTGGTGTCGCAAAAAAATGTTTCCCTTCCA
324 ACATTCCCTTCGTTAGGATACATGACATGGATGCTTTGGTGTCGCAAGAAAAGGTTTTCCTTCCA
* *
2118140 TCGATTTTGATAGAATCAAAGTTTGTCTCTTAATTAAGACAACCATGAATTA-TCATACTAATCC
389 CCGATTTTGATAGAATCAAAGTTTGTCTCTTAATTAAGACAAACATGAA-TAGTCATACTAATCC
2118204 CCATTCTTTTCAGGATTTGGCAC
453 CCATTCTTTTCAGGATTTGGCAC
** *
2118227 CATAAACATAGCCTTCTCATTAGGATAGATAAAATTGATGCTTTGGTTTCGCAAGAAAAACTTCC
1 CATAAACATAGCCTTCTCATTAGGATAGACGAAATTGATGCTTTGGTTTCGCAAGAAAAACTTTC
* * *
2118292 TTGCCACAAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAAGAGACAAACATCGATTCTATTAAT
66 TTGCCACAAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAAGAGAAAAACATGGATTCTAGTAAT
* * *
2118357 GATCTTCATTTATTTTGTGATT-GGACACTATAAACACCTTCCCCTCATTAGGATAAATGATATT
131 GATCTTCATTCATTTTGTGATTAGG-CACTATAAACACATTCTCCTCATTAGGATAAATGATATT
* * *
2118421 GATGGTTTTCTGTTGGTTGAAAATCTTCTCTTTACCCTATTTTCCTTAAAATCGAAGTTCATCCC
195 GATGGTTTTCTTTTGGATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCGAAGTTCATCCC
* *
2118486 CTAAATAAGGCAAGCATTGATTCTCTTAAAAATCTCCATTTTTTCAAGATTGGGAA-CAAAAACA
260 TTAAATAAGGCAAGCATTGATTCTCTTAACAATCTCCATTTTTTCAAGATTGGGAACCAAAAACA
* *
2118550 CATT-CCTATCGTTAGGATACATGACATGGATGCTTTGGTGTCACAAGAAAAGGTTTTCCTTTCA
325 CATTCCCT-TCGTTAGGATACATGACATGGATGCTTTGGTGTCGCAAGAAAAGGTTTTCCTTCCA
* *
2118614 CCGATTTTGATAGAATCAAGGTTTGCCTCTTAATTAAGACAAACATGAATAGTCATACTAATCCC
389 CCGATTTTGATAGAATCAAAGTTTGTCTCTTAATTAAGACAAACATGAATAGTCATACTAATCCC
*
2118679 CATTCTATTCAGGATTTGGCAC
454 CATTCTTTTCAGGATTTGGCAC
* * * * * * *
2118701 C-TAAATATAGTCTTCTCTTTAGGACAGACAAAATTGATGCATTGGATTT-GCAAGAAAGACTTT
1 CATAAACATAGCCTTCTCATTAGGATAGACGAAATTGATGCTTTGG-TTTCGCAAGAAAAACTTT
* * * * *
2118764 CATGCCACCAATTTTTGCT-AAGTCTAAGTTCGTGCCTCAAATGAGACAAACTTGGATTCTAGTA
65 CTTGCCACAAATTTTTG-TAAAGTCTAAGTTCGTGCCTCAAAAGAGAAAAACATGGATTCTAGTA
* * * * * *
2118828 ATGATCTTCATTCATTTTGAT-ATTAGGGACAATAACCATATTCTCCTTATTTAGGAGAAATGAT
129 ATGATCTTCATTCATTTTG-TGATTAGGCACTATAAACACATTCTCCTCA-TTAGGATAAATGAT
* * * * *
2118892 ATTGATGGTTTTCTCTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAACCGTAGTTCAT
192 ATTGATGGTTTTCTTTTGGATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCGAAGTTCAT
* * * *
2118957 CCCCTAAATAAGGCAAGCGTTGATTCTCTTAACAATCTCCATTTTTTCAAGATTAGGCACCAAAA
257 CCCTTAAATAAGGCAAGCATTGATTCTCTTAACAATCTCCATTTTTTCAAGATTGGGAACCAAAA
* * *
2119022 ACACATTCCCTTCATTAGGATACATGACATGGATGCTTTGGTGTTGCAAGAAAATGTTTTCCTTC
322 ACACATTCCCTTCGTTAGGATACATGACATGGATGCTTTGGTGTCGCAAGAAAAGGTTTTCCTTC
* * *
2119087 CACTGATTTTGATAGAGTCAAAGTTTGTCTCTTAATTAAGACAAATATGAATAGTCATACTAATC
387 CACCGATTTTGATAGAATCAAAGTTTGTCTCTTAATTAAGACAAACATGAATAGTCATACTAATC
*
2119152 CCCATTCTTTTTAGGATTTGGCAC
452 CCCATTCTTTTCAGGATTTGGCAC
* *
2119176 CATAAACATAGCCCTCTCATTGGGATAGACGAAATTGATGCTTTGGTTTCGCAAG-AAAACTTTC
1 CATAAACATAGCCTTCTCATTAGGATAGACGAAATTGATGCTTTGGTTTCGCAAGAAAAACTTTC
* * * *
2119240 TAGGCACAAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAAGGGAAAAACATGAATTCTAGTAAT
66 TTGCCACAAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAAGAGAAAAACATGGATTCTAGTAAT
* * * *
2119305 AATATTGATTCATTTTATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTG
131 GATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTG
* *
2119370 ATGGTTTTCTTTTGGATGAAAATCTTTTCTTTACCATATTTTCCTTAAAATCGAAGTTCATCCCC
196 ATGGTTTTCTTTTGGATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCGAAGTTCATCCCT
2119435 TAAATAAGGCAAGCATTGATTCTCTTAACAATCTCCATTTTTTCAAGATTGGGAA-CAAAAACAC
261 TAAATAAGGCAAGCATTGATTCTCTTAACAATCTCCATTTTTTCAAGATTGGGAACCAAAAACAC
* * *
2119499 ATT-CCTATCGTTAGGATACATGACGTGGATGCTTTAGTGTCGCAAGAAAAGGTTTTCCTTTCAC
326 ATTCCCT-TCGTTAGGATACATGACATGGATGCTTTGGTGTCGCAAGAAAAGGTTTTCCTTCCAC
* *
2119563 CGATTTTGATAGAATCAAAGTTTGTCTCTTAATTAAGACAACCATGAATAATCATACTAATCCCC
390 CGATTTTGATAGAATCAAAGTTTGTCTCTTAATTAAGACAAACATGAATAGTCATACTAATCCCC
*
2119628 ATTCTTTTCAGGATTTAGCAC
455 ATTCTTTTCAGGATTTGGCAC
**
2119649 CATAAACATAGCCTTCTCATTAGGATAGATAAAATTGATGCTTTGGTTTCGCAAGAAAAACTTTC
1 CATAAACATAGCCTTCTCATTAGGATAGACGAAATTGATGCTTTGGTTTCGCAAGAAAAACTTTC
* * *
2119714 TTGCCACAAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAAAGAGACAAACATAGATTCTAGTAAT
66 TTGCCACAAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAAGAGAAAAACATGGATTCTAGTAAT
* * *
2119779 GATCTTCATTTATTTTGTGATT-GGACATTATAAACACATTCCCCTCATTAGGATAAATGATATT
131 GATCTTCATTCATTTTGTGATTAGG-CACTATAAACACATTCTCCTCATTAGGATAAATGATATT
* *
2119843 GATGGTTTTCTTTTGGATGAAAATCTTCTCTTTACCCTATTTTCCTTAAAATCGAAGTTAATCCC
195 GATGGTTTTCTTTTGGATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCGAAGTTCATCCC
* * *
2119908 CTAAATAAGGCAAGCATTGATTCTCATAACAATCTCCA-TTTTTCAAGATTGGGAACAAAAAAAC
260 TTAAATAAGGCAAGCATTGATTCTCTTAACAATCTCCATTTTTTCAAGATTGGGAAC-CAAAAAC
*
2119972 ACATT-CCTATCGTTAGGATACATGACATGGATGCTTTGGTGTCGCAAGAAAAGGTTTTCCTTTC
324 ACATTCCCT-TCGTTAGGATACATGACATGGATGCTTTGGTGTCGCAAGAAAAGGTTTTCCTTCC
* *
2120036 ACCGATTTTGATAGAATCAAGGTTTGCCTCTTAATTAAGACAAACATGAATAGTCATACTAATCC
388 ACCGATTTTGATAGAATCAAAGTTTGTCTCTTAATTAAGACAAACATGAATAGTCATACTAATCC
*
2120101 CCATTCTATTCAGGATTTGGCAC
453 CCATTCTTTTCAGGATTTGGCAC
* * * * * ** * *
2120124 CAAAAATATAGTCTTCTCTTTAGGACAGAAAAAATTGATGCTTTGGATTCGCAAGAAAGACTTTC
1 CATAAACATAGCCTTCTCATTAGGATAGACGAAATTGATGCTTTGGTTTCGCAAGAAAAACTTTC
* * * * * * *
2120189 ATGCCACCAATTTTTGCT-AAGTCTAAGTTCGTGTCTCAAATGAGACAAACTTGGATTTTAGTAA
66 TTGCCACAAATTTTTG-TAAAGTCTAAGTTCGTGCCTCAAAAGAGAAAAACATGGATTCTAGTAA
* * * * *
2120253 TGATCTTCATTCATTTTGAT-ATTAGGGACAATAAACATATTCTCCTTATTTAGGAGAAATGATA
130 TGATCTTCATTCATTTTG-TGATTAGGCACTATAAACACATTCTCCTCA-TTAGGATAAATGATA
* * * *
2120317 TTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAACCGTAGTTCATC
193 TTGATGGTTTTCTTTTGGATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCGAAGTTCATC
2120382 CCTTAAATAAGGCAAGCATTGATTCTCTTAACAATCTCCATTTTTTTCAAGATTGGGAACCAAAA
258 CCTTAAATAAGGCAAGCATTGATTCTCTTAACAATCTCCA-TTTTTTCAAGATTGGGAACCAAAA
* * * * *
2120447 ACACATTCCCTTCATTAGGATACATGACACT-AATGCTTTGGGGTTGCAAGAAAAGCTTTT-CTT
322 ACACATTCCCTTCGTTAGGATACATGACA-TGGATGCTTTGGTGTCGCAAGAAAAGGTTTTCCTT
* * * *
2120510 GCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAA
386 -CCACCGATTTTGATAGAATCAAAGTTTGTCTCTTAATTAAGACAAACATGAATAGTCATACTAA
*
2120575 TCTCCATTCTTTTCAGGATTTGGCAC
450 TCCCCATTCTTTTCAGGATTTGGCAC
** * * * * *
2120601 CATAAACATAGTTTTCTAATTGGGACAGA-TAGAATTGATGCTTTGGATTCGCAAGAAAAACTTT
1 CATAAACATAGCCTTCTCATTAGGATAGACGA-AATTGATGCTTTGGTTTCGCAAGAAAAACTTT
* *
2120665 GTTGCTACAAA
65 CTTGCCACAAA
2120676 CATGGATTCC
Statistics
Matches: 3860, Mismatches: 439, Indels: 101
0.88 0.10 0.02
Matches are distributed among these distances:
472 6 0.00
473 382 0.10
474 876 0.23
475 1252 0.32
476 968 0.25
477 354 0.09
478 22 0.01
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35
Consensus pattern (475 bp):
CATAAACATAGCCTTCTCATTAGGATAGACGAAATTGATGCTTTGGTTTCGCAAGAAAAACTTTC
TTGCCACAAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAAGAGAAAAACATGGATTCTAGTAAT
GATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTG
ATGGTTTTCTTTTGGATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCGAAGTTCATCCCT
TAAATAAGGCAAGCATTGATTCTCTTAACAATCTCCATTTTTTCAAGATTGGGAACCAAAAACAC
ATTCCCTTCGTTAGGATACATGACATGGATGCTTTGGTGTCGCAAGAAAAGGTTTTCCTTCCACC
GATTTTGATAGAATCAAAGTTTGTCTCTTAATTAAGACAAACATGAATAGTCATACTAATCCCCA
TTCTTTTCAGGATTTGGCAC
Found at i:2124462 original size:10 final size:10
Alignment explanation
Indices: 2124447--2124476 Score: 51
Period size: 10 Copynumber: 2.9 Consensus size: 10
2124437 TAAAGTCTAA
2124447 ATACATTAGG
1 ATACATTAGG
2124457 ATACATTAGG
1 ATACATTAGG
2124467 ATACACTTAG
1 ATACA-TTAG
2124477 TCTTTTCAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 15 0.79
11 4 0.21
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.30
Consensus pattern (10 bp):
ATACATTAGG
Found at i:2125111 original size:695 final size:695
Alignment explanation
Indices: 2123782--2125141 Score: 2711
Period size: 695 Copynumber: 2.0 Consensus size: 695
2123772 CAGTCTCCAT
2123782 TCTTTTCAAGATTGGGAACAAAAACACATTCCTTTCATTAGGATACATGTCATGGATGCTTTGGT
1 TCTTTTCAAGATTGGGAACAAAAACACATTCCTTTCATTAGGATACATGTCATGGATGCTTTGGT
2123847 GTCGTAAGAAAAGTTTTTCTTTCTGCCGTTTTTTATAAAATCAAAGTTTGTCTCTTAAATAAGAC
66 GTCGTAAGAAAAGTTTTTCTTTCTGCCGTTTTTTATAAAATCAAAGTTTGTCTCTTAAATAAGAC
2123912 AAACCTGAATAGTCATACTAATCCCCATTCTTTTCAGGATTTGGCACCATAAACATAGTCTTCTC
131 AAACCTGAATAGTCATACTAATCCCCATTCTTTTCAGGATTTGGCACCATAAACATAGTCTTCTC
2123977 ATTAGGATAGACAAAATTGATGCTTTGCTTTCTAGTAATGATCTTCATTCTTTTGTGATTAGAAA
196 ATTAGGATAGACAAAATTGATGCTTTGCTTTCTAGTAATGATCTTCATTCTTTTGTGATTAGAAA
2124042 CTATAAACACATTCTCTTCATTAGAATAAATGATATTGATGGTTTCCATTTGCGTGAAAATCGTT
261 CTATAAACACATTCTCTTCATTAGAATAAATGATATTGATGGTTTCCATTTGCGTGAAAATCGTT
2124107 CCTTTGCCTTATTTTCCTTAAAATTGAAGTTCATCCCATAAATAAGGCAAGCATTGATTCTCATA
326 CCTTTGCCTTATTTTCCTTAAAATTGAAGTTCATCCCATAAATAAGGCAAGCATTGATTCTCATA
2124172 ACAGTCTCCATTCTTTTCTAGATTGGGAACCAAAAACACATTACCTTTATTAGGATACATAACAT
391 ACAGTCTCCATTCTTTTCTAGATTGGGAACCAAAAACACATTACCTTTATTAGGATACATAACAT
2124237 TAATAATTTGGGGTCGCAAGAACTGCTTTTCTTGCAGCCGTTTTTGATAGATTCAAGTTTGTCAT
456 TAATAATTTGGGGTCGCAAGAACTGCTTTTCTTGCAGCCGTTTTTGATAGATTCAAGTTTGTCAT
2124302 TTAAATAAGACAAATATACTTATACTAATCCCCATTCTATTAAGGATTACACACCATAAACTTAG
521 TTAAATAAGACAAATATACTTATACTAATCCCCATTCTATTAAGGATTACACACCATAAACTTAG
2124367 TCTTCTCATAAGGATACATGATATTGATGCTTTAGTTTCGCAAGAAAGGCTTTCCTCCCACCAAT
586 TCTTCTCATAAGGATACATGATATTGATGCTTTAGTTTCGCAAGAAAGGCTTTCCTCCCACCAAT
2124432 TTTTGTAAAGTCTAAATACATTAGGATACATTAGGATACACTTAG
651 TTTTGTAAAGTCTAAATACATTAGGATACATTAGGATACACTTAG
2124477 TCTTTTCAAGATTGGGAACAAAAACACATTCCTTTCATTAGGATACATGTCATGGATGCTTTGGT
1 TCTTTTCAAGATTGGGAACAAAAACACATTCCTTTCATTAGGATACATGTCATGGATGCTTTGGT
2124542 GTCGTAAGAAAAGTTTTTCTTTCTGCCGTTTTTTATAAAATCAAAGTTTGTCTCTTAAATAAGAC
66 GTCGTAAGAAAAGTTTTTCTTTCTGCCGTTTTTTATAAAATCAAAGTTTGTCTCTTAAATAAGAC
2124607 AAACCTGAATAGTCATACTAATCCCCATTCTTTTCAGGATTTGGCACCATAAACATAGTCTTCTC
131 AAACCTGAATAGTCATACTAATCCCCATTCTTTTCAGGATTTGGCACCATAAACATAGTCTTCTC
2124672 ATTAGGATAGACAAAATTGATGCTTTGCTTTCTAGTAATGATCTTCATTCTTTTGTGATTAGAAA
196 ATTAGGATAGACAAAATTGATGCTTTGCTTTCTAGTAATGATCTTCATTCTTTTGTGATTAGAAA
2124737 CTATAAACACATTCTCTTCATTAGAATAAATGATATTGATGGTTTCCATTTGCGTGAAAATCGTT
261 CTATAAACACATTCTCTTCATTAGAATAAATGATATTGATGGTTTCCATTTGCGTGAAAATCGTT
2124802 CCTTTGCCTTATTTTCCTTAAAATTGAAGTTCATCCCATAAATAAGGCAAGCATTGATTCTCATA
326 CCTTTGCCTTATTTTCCTTAAAATTGAAGTTCATCCCATAAATAAGGCAAGCATTGATTCTCATA
2124867 ACAGTCTCCATTCTTTTCTAGATTGGGAACCAAAAACACATTACCTTTATTAGGATACATAACAT
391 ACAGTCTCCATTCTTTTCTAGATTGGGAACCAAAAACACATTACCTTTATTAGGATACATAACAT
2124932 TAATAATTTGGGGTCGCAAGAACTGCTTTTCTTGCAGCCGTTTTTGATAGATTCAAGTTTGTCAT
456 TAATAATTTGGGGTCGCAAGAACTGCTTTTCTTGCAGCCGTTTTTGATAGATTCAAGTTTGTCAT
*
2124997 TTAAATAAGACAAATATACTTATATTAATCCCCATTCTATTAAGGATTACACACCATAAACTTAG
521 TTAAATAAGACAAATATACTTATACTAATCCCCATTCTATTAAGGATTACACACCATAAACTTAG
2125062 TCTTCTCATAAGGATACATGATATTGATGCTTTAGTTTCGCAAGAAAGGCTTTCCTCCCACCAAT
586 TCTTCTCATAAGGATACATGATATTGATGCTTTAGTTTCGCAAGAAAGGCTTTCCTCCCACCAAT
2125127 TTTTGTAAAGTCTAA
651 TTTTGTAAAGTCTAA
2125142 GTTAATGTTT
Statistics
Matches: 664, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
695 664 1.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (695 bp):
TCTTTTCAAGATTGGGAACAAAAACACATTCCTTTCATTAGGATACATGTCATGGATGCTTTGGT
GTCGTAAGAAAAGTTTTTCTTTCTGCCGTTTTTTATAAAATCAAAGTTTGTCTCTTAAATAAGAC
AAACCTGAATAGTCATACTAATCCCCATTCTTTTCAGGATTTGGCACCATAAACATAGTCTTCTC
ATTAGGATAGACAAAATTGATGCTTTGCTTTCTAGTAATGATCTTCATTCTTTTGTGATTAGAAA
CTATAAACACATTCTCTTCATTAGAATAAATGATATTGATGGTTTCCATTTGCGTGAAAATCGTT
CCTTTGCCTTATTTTCCTTAAAATTGAAGTTCATCCCATAAATAAGGCAAGCATTGATTCTCATA
ACAGTCTCCATTCTTTTCTAGATTGGGAACCAAAAACACATTACCTTTATTAGGATACATAACAT
TAATAATTTGGGGTCGCAAGAACTGCTTTTCTTGCAGCCGTTTTTGATAGATTCAAGTTTGTCAT
TTAAATAAGACAAATATACTTATACTAATCCCCATTCTATTAAGGATTACACACCATAAACTTAG
TCTTCTCATAAGGATACATGATATTGATGCTTTAGTTTCGCAAGAAAGGCTTTCCTCCCACCAAT
TTTTGTAAAGTCTAAATACATTAGGATACATTAGGATACACTTAG
Found at i:2126946 original size:476 final size:470
Alignment explanation
Indices: 2125953--2127151 Score: 1434
Period size: 476 Copynumber: 2.5 Consensus size: 470
2125943 ATGCTTTGCT
** * *
2125953 TTCTAGTAATGATCTTCATTC-TTTTGTGATTAGAAACTATAAACACATTCTCTTCATTAGAATA
1 TTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATA
* * * * * * **
2126017 AATGATATTGATGGTTTCCATTTGCGTGAAAATCGTTCCTTTGCCTTATTTTCCTTAAAATTGAA
66 AATGATATTGATGGTTTACTTTTGCATGAAAATC-TTTCTTTGCCCTATTTTCCTTCAAATCAAA
* * * *
2126082 GTTCATCCCATAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCTAGATTGGGA
130 GTTTATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTATTTTCAAGATTGGGA
** * * * **
2126147 ACCAAAAACACATTACCTTTATTAGGATACATAACATTAATAATTTGGGGTCGCAAG-AACTGCT
195 ACCAAAAACACATT-CCTTCGTTAGGATACATGACATTGATACTTTGGGGTCGCAAGAAAAAGCT
* * * * * * *
2126211 TTTCTTGCAGCCGTTTTTGATAGATTCAAGTTTGTCATTTAAATAAGACAAATATACTTATACTA
259 TTTCATGCAGCCATTTTTGATAAAATCAAGTTTGTCAATTAAACAAGACAAATATACTCATACTA
*
2126276 ATCCCCATTCTATTAAGGATTACACACCATAAACTTAGTCTTCTCATAAGGATACATGATATTGA
324 ATCCCCATTCTATTAAGGATTACACACCATAAACTTAGTCTTCTCATAAGGATACATGAAATTGA
*
2126341 TGCTTTAGTTTCGCAAGAAAGGCTTTTCTCCCACCAATTTTTGTAAAGTCTAAGTTCATGTTTCA
389 TGCTTTAGTTTCGCAAGAAAGGCTTTTCTCCCACCAATTTTTGTAAAGTCTAAGTTCATGTCTCA
*
2126406 AATGAGACAAACATGGA
454 AACGAGACAAACATGGA
*
2126423 TTCTAGTAATGATCTTCATTCATTTTGTGATTGGGCACTATAAACACATTCTCCTCATTAGGATA
1 TTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATA
* * *
2126488 AATGATATTGATGGTTTACTTTTGCACGAAAATCTTTTCTTTGCCCTATTTTCCTTCAAATCCAT
66 AATGATATTGATGGTTTACTTTTGCATGAAAATC-TTTCTTTGCCCTATTTTCCTTCAAATCAAA
* * *
2126553 GTTTATCCCTTAAATTAGGCAAGCATTGATTCTCTTAATAGTCTCCATTATTTTCAAGATTGGGA
130 GTTTATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTATTTTCAAGATTGGGA
* * **
2126618 ACCAAAAACACATTCCATTCGTTAGCA-AGCATGACATTGACACTTTGTTGTCGCAAGAAAAAG-
195 ACCAAAAACACATTCC-TTCGTTAGGATA-CATGACATTGATACTTTGGGGTCGCAAGAAAAAGC
**
2126681 TTTTCCAT-CCTCCATTTTTGATAAAATCAAAGTTTGTCTCCTAATTAACACAA-ACAAGA-ATA
258 TTTT-CATGCAGCCATTTTTGATAAAATC-AAGTTTG--T-C-AATTAA-ACAAGACAA-ATATA
* * * *** * * *
2126743 GTCATACTAATCCCCATTCTTTTTAGGATTTGGCACCATAAACATT-GTCTTCTCTTTAGGATAG
315 CTCATACTAATCCCCATTCTATTAAGGATTACACACCATAAAC-TTAGTCTTCTCATAAGGATAC
* * * * *
2126807 ATGAAATTGCTGCTTTGGTTTTGCGAGAAAGGC-TTTCTTGCCACCAATTTTTGTAAAGTCTAAG
379 ATGAAATTGATGCTTTAGTTTCGCAAGAAAGGCTTTTC-TCCCACCAATTTTTGTAAAGTCTAAG
2126871 -T-ATGTGCCTCAAACGAGACAAACATGGA
443 TTCATGT--CTCAAACGAGACAAACATGGA
* *
2126899 TTCTAGCAATAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGTG-T
1 TTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAG-GAT
* * * * * *
2126963 AATTGATATTAAAGGTTTTCTTTTTGCATGAAAATC-TTCTTTACCCTATTTTCCTTCAATTCAA
65 AAATGATATTGATGGTTTAC-TTTTGCATGAAAATCTTTCTTTGCCCTATTTTCCTTCAAATCAA
* * * * * *
2127027 CGTTTATCCCTTAAATAAGGCAAGCACTGATTCTCGTAACAATCTCCATTCTTTTTCAGGATTGG
129 AGTTTATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATT-ATTTTCAAGATTGG
* *
2127092 GAACCAAAAACGCATTCCTTTCGTTAGGATACATGACATTGATGCTTTGGGGTCGCAAGA
193 GAACCAAAAACACATTCC-TTCGTTAGGATACATGACATTGATACTTTGGGGTCGCAAGA
2127152 TGATGAAAAC
Statistics
Matches: 623, Mismatches: 86, Indels: 34
0.84 0.12 0.05
Matches are distributed among these distances:
470 24 0.04
471 212 0.34
472 12 0.02
474 5 0.01
475 75 0.12
476 273 0.44
477 22 0.04
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (470 bp):
TTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATA
AATGATATTGATGGTTTACTTTTGCATGAAAATCTTTCTTTGCCCTATTTTCCTTCAAATCAAAG
TTTATCCCTTAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTATTTTCAAGATTGGGAA
CCAAAAACACATTCCTTCGTTAGGATACATGACATTGATACTTTGGGGTCGCAAGAAAAAGCTTT
TCATGCAGCCATTTTTGATAAAATCAAGTTTGTCAATTAAACAAGACAAATATACTCATACTAAT
CCCCATTCTATTAAGGATTACACACCATAAACTTAGTCTTCTCATAAGGATACATGAAATTGATG
CTTTAGTTTCGCAAGAAAGGCTTTTCTCCCACCAATTTTTGTAAAGTCTAAGTTCATGTCTCAAA
CGAGACAAACATGGA
Found at i:2128805 original size:12 final size:11
Alignment explanation
Indices: 2128783--2128854 Score: 53
Period size: 12 Copynumber: 6.5 Consensus size: 11
2128773 AGAGAAAGAA
*
2128783 GAGAGAGGAGG
1 GAGATAGGAGG
2128794 GATGATAGGAGG
1 GA-GATAGGAGG
*
2128806 AGAGACAGGA--
1 -GAGATAGGAGG
*
2128816 GAGATAGTA--
1 GAGATAGGAGG
2128825 GAGATAGGAGG
1 GAGATAGGAGG
2128836 GATGATAGGAGG
1 GA-GATAGGAGG
2128848 AGAGATA
1 -GAGATA
2128855 ATAGAGAGAG
Statistics
Matches: 50, Mismatches: 5, Indels: 11
0.76 0.08 0.17
Matches are distributed among these distances:
9 15 0.30
11 4 0.08
12 27 0.54
13 4 0.08
ACGTcount: A:0.40, C:0.01, G:0.47, T:0.11
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:2128834 original size:42 final size:42
Alignment explanation
Indices: 2128773--2128852 Score: 133
Period size: 42 Copynumber: 1.9 Consensus size: 42
2128763 TAGCCCTCAA
2128773 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* * *
2128815 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGA
1 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGA
2128853 TAATAGAGAG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.44, C:0.01, G:0.46, T:0.09
Consensus pattern (42 bp):
AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:2128849 original size:33 final size:33
Alignment explanation
Indices: 2128812--2128882 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
2128802 GAGGAGAGAC
* * *
2128812 AGGAGAGATAGTAGAGATAGGAGGGATGATAGG
1 AGGAGAGATAATAGAGAGAGGAGGGATGACAGG
2128845 AGGAGAGATAATAGAGAGAGGAGGGATGACAGG
1 AGGAGAGATAATAGAGAGAGGAGGGATGACAGG
2128878 AGGAG
1 AGGAG
2128883 GAGAGAAGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.41, C:0.01, G:0.46, T:0.11
Consensus pattern (33 bp):
AGGAGAGATAATAGAGAGAGGAGGGATGACAGG
Found at i:2128861 original size:42 final size:42
Alignment explanation
Indices: 2128773--2128861 Score: 124
Period size: 42 Copynumber: 2.1 Consensus size: 42
2128763 TAGCCCTCAA
*
2128773 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAAG
* * * * *
2128815 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGATAAT
1 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAAG
2128857 AGAGA
1 AGAGA
2128862 GAGGAGGGAT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.45, C:0.01, G:0.44, T:0.10
Consensus pattern (42 bp):
AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAAG
Found at i:2134688 original size:158 final size:157
Alignment explanation
Indices: 2134054--2138012 Score: 515
Period size: 158 Copynumber: 25.0 Consensus size: 157
2134044 TGTAAAGTTT
* * *
2134054 AAGTTCGTACCTTAAATGAGACAAACATGGATTCTA-GTAATAATCTTCATTCATTTTGTGATTA
1 AAGTTCGT-CCTTAAATAAGACAAACATGGATTC-ACATAATAATCTTCATTCATTTAGTGATTA
* * * * ** *
2134118 GCCACTACAAACACATTGTCCTCATTAGGATAAATGATATTGATTG-TTTTCTTTTGCATGAAAA
64 GGCACTATAAACACATTCTCCTCATTAGGATAAATGATATT-AATGCTTTGGTTTTGCAAGAAAA
2134182 TCTTTTCTTTACCCTATTTTCCTTAAAATCG
128 TC-TTTCTTTACCCTATTTTCCTTAAAATCG
* * * * * * * * * *
2134213 AAGTTCATCCCTTAAATAAGGCAAGCATTGATCCTCATAACAGTC-TCTATTCTTTTCA-AGATT
1 AAGTTCGT-CCTTAAATAAGACAAACATGGATTCACATAATAATCTTC-ATTCATTT-AGTGATT
* * * * ** * * * * *
2134276 GGGAACCATAAACACATTC-CTTTCATTAGGATACCTTACATTGATGCTTTGGTGTCGCAAGAAA
63 AGGCACTATAAACACATTCTC-CTCATTAGGATAAATGATATTAATGCTTTGGTTTTGCAAGAAA
* * * *** * *
2134340 AGTCTTGC--GA--CTGTTTTTGATAGAATCA
127 A-TCTTTCTTTACCCTATTTTCCTTAAAATCG
* ** * * * * ** * *
2134368 AAGTTTGTCTCTTAAATAAGACAAAGTTGAATACTCATACTAATCCCCATTCTTTTCAG-GATTT
1 AAGTTCGTC-CTTAAATAAGACAAACATGGATTCACATAATAATCTTCATTCATTT-AGTGATTA
* * * * * * * * **
2134432 GGCACTATAAACATAGTCTTCTCATTAGGATAGATTAAATTGATGCTTTGGTTTTACAAGAAAGG
64 GGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTAATGCTTTGGTTTTGCAAGAAAAT
** * * *
2134497 CTTTCTTCCCACCAATTTT--TGTAAAGTCT
129 CTTTCTTTAC-CCTATTTTCCT-TAAAATCG
* * * *
2134526 AAGTTCGTGCCTCAAATGAGACAAACATGGATTCACGTAATAATCTTCATTCATTTGGTGATTAG
1 AAGTTCGT-CCTTAAATAAGACAAACATGGATTCACATAATAATCTTCATTCATTTAGTGATTAG
* * **
2134591 GCACTATAAACACATTCTCCTCATTAGGATAAATGATATTAATGATTT-TTTTTGCCCGAAAATC
65 GCACTATAAACACATTCTCCTCATTAGGATAAATGATATTAATGCTTTGGTTTTGCAAGAAAATC
2134655 TTTTCTTTACCCTATTTTCCTTAAAATCG
130 -TTTCTTTACCCTATTTTCCTTAAAATCG
* * * * * * * * * * *
2134684 AAGTTCATCTCTTAAATAAGGCAACCATTGATTCTCTTAACAGTCTCCATTCTTTTCA-AGATT-
1 AAGTTCGTC-CTTAAATAAGACAAACATGGATTCACATAATAATCTTCATTCATTT-AGTGATTA
* * * ** * * * ** * **
2134747 GGGAATCAAAAACACATTC-CCTTCATTAGGATTCATGACATTGACGCTTTGGGGGTCGTGAGAA
64 GGCACT-ATAAACACATTCTCC-TCATTAGGATAAATGATATTAATGCTTT-GGTTTTGCAAGAA
* ** * ** * *
2134811 AAACTTTTCATGCAACCGT-TTTT-GATAGAATCA
126 AATC-TTTC-T-TTACCCTATTTTCCTTAAAATCG
* * * * * * ** * *
2134844 AAGTTTATGT-CTTAAATAGGACAAACATGAATACTCATACTAATCCCCATACTTTTAAG-GATT
1 AAG-TT-CGTCCTTAAATAAGACAAACATGGATTCACATAATAATCTTCATTCATTT-AGTGATT
* * ** ** * * * * * * *** *
2134907 ACGCACCATAAACTTAGCCTTCTCATAAGGATACATGATATTGACGCTTTAGTTTCATAAGAAAG
63 AGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTAATGCTTTGGTTTTGCAAGAAAA
* ** * * **
2134972 GCTTTCTTCCCACCAATTTT--TGTAAATTTT
128 TCTTTCTTTAC-CCTATTTTCCT-TAAAATCG
* * * * * *
2135002 AAGTTCGTGCCTCAAATGAGACAAACATGGGTTCTAGC--AATGATCTTCATTCATTTTGTGAGT
1 AAGTTCGT-CCTTAAATAAGACAAACATGGATTC-A-CATAATAATCTTCATTCATTTAGTGATT
* * * ** * *
2135065 AGGCACTATAAAAACACTCTCCTCATTAGGATAAATGATATTGATTG-TTTTCTTTTACATGAAA
63 AGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATT-AATGCTTTGGTTTTGCAAGAAA
2135129 ATCTTTTCTTTACCCTATTTTCCTTAAAATCG
127 ATC-TTTCTTTACCCTATTTTCCTTAAAATCG
* ** * * * * * ** *
2135161 ATGTTTATCCCTTAAATAAGGCAAGCATTGATTCTCGTAATAGCCTACATT-ATTTTCAG-GATT
1 AAGTTCGT-CCTTAAATAAGACAAACATGGATTCACATAATAATCTTCATTCA-TTT-AGTGATT
* * * * * ** **
2135224 AGGAACCAAAAACACATTC-CCTTCATTACGATACAA-GACATGGATGCTTTGGGGTTGCAAGAA
63 AGGCACTATAAACACATTCTCC-TCATTAGGATA-AATGATATTAATGCTTTGGTTTTGCAAGAA
* * * * *
2135287 AAGCTTTTCTTGCAACCT-TTTT-TTATAAAATCA
126 AATC-TTTCTT-TACCCTATTTTCCT-TAAAATCG
* * * * * ** *
2135320 AAGTTTGTCTCTTAAATAAGGCCAAACAT-GAGTACTCATACTAATCCCCATTCTTTTAAG-GAT
1 AAGTTCGTC-CTTAAATAA-GACAAACATGGA-TTCACATAATAATCTTCATTCATTT-AGTGAT
* * ** * ** * * * * * *
2135383 TATGCACCATAAACTTAGTCTTGTCA-TATGGATACATAATATTGACT-CTTTAGTTTCGTAAGA
62 TAGGCACTATAAACACATTCTCCTCATTA-GGATAAATGATATT-AATGCTTTGGTTTTGCAAGA
** ** * * **
2135446 AAGGCTTTCTTCCCACCAATTTT--TGTAAAGTTT
125 AAATCTTTCTTTAC-CCTATTTTCCT-TAAAATCG
* * * * *
2135479 AAGTTCTTGCCTCAAA-AGGGACAAATATGAATTCTAC-TAATAATCTTCATTCATTTTA-TGAT
1 AAGTTCGT-CCTTAAATA-AGACAAACATGGATTC-ACATAATAATCTTCATTCA-TTTAGTGAT
* * * ** ** *
2135541 TAGGCACTATAAACACCTTCTCCTTATTAGGATAAATGATATTGATATTTTTCTTTTGCATGAAA
62 TAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTAATGCTTTGGTTTTGCAAGAAA
* *
2135606 ATCTTTTCCTTGCCCTATTTTCCTTAAAATCG
127 ATC-TTTCTTTACCCTATTTTCCTTAAAATCG
* ** * * * * * * * * * ** *
2135638 TAGTTTATCCCATAAATAAGGCAAGCATTGATTCTCTTAACAGTCTCCATTTTTTTCAG-GATTG
1 AAGTTCGT-CCTTAAATAAGACAAACATGGATTCACATAATAATCTTCATTCATTT-AGTGATTA
* * * * * * * ** ** *
2135702 GGAACCA-AAAGCATATTCTCTTCATTAGGATACATGACATTGATGCTTTGGGGTCACAA-AAAG
64 GGCACTATAAA-CACATTCTCCTCATTAGGATAAATGATATTAATGCTTTGGTTTTGCAAGAAAA
* ** * * ** * *
2135765 GCTTTTCCTGCAATCGT-TTTT-GATAGAATCA
128 TC-TTT-CT-TTACCCTATTTTCCTTAAAATCG
** * *** * ** ** *
2135796 AAGTTTTTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCGCCATTC-TTTTCTGGATTT
1 AAGTTCGTC-CTTAAATAAGACAAACATGGATTCACATAATAATCTTCATTCATTTAGT-GATTA
* ** *** * * * * ** * * * *
2135860 GGCACCATGCATGTAGTCTTCTCATTAGGACAGACAAAATTGATGCTTTGGATTCGCAAGAAAGA
64 GGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTAATGCTTTGGTTTTGCAAGAAA-A
* * ** * *
2135925 -CTTTC-TTGCCACAATTTTTGTT-AAGTCT
128 TCTTTCTTTACC-CTATTTTCCTTAAAATCG
* * * * * *
2135953 AAATTCGTGCCTCAAATGAGACAAACATAGATTCTA-GTAATAATCTTCATTCATTTTGTGATTA
1 AAGTTCGT-CCTTAAATAAGACAAACATGGATTC-ACATAATAATCTTCATTCATTTAGTGATTA
* * * * * * ** *
2136017 GGCACTAAAAACACACTCTCCTCATTGGGATAAATAATATTGATGGTTTTCTTTTGCATGAAAAT
64 GGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTAATGCTTTGGTTTTGCAAGAAAAT
* * *
2136082 ATTTTCTTTGCCCTATTTTTCTTAAAATCG
129 -CTTTCTTTACCCTATTTTCCTTAAAATCG
* ** * * * * * * ** * *
2136112 ATGTTTATCCCTTAAATATGGCAAGCATTGATTCTCGTAATAGCCTACAGT-ATTTTCAG-GATT
1 AAGTTCGT-CCTTAAATAAGACAAACATGGATTCACATAATAATCTTCATTCA-TTT-AGTGATT
* * * * * ** * ** * * **
2136175 GGGAACCAAAAACACTTTCTTTTCATTATGATATGTGACATTGATGCTTTGGGGTTGCAAGAAAA
63 AGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTAATGCTTTGGTTTTGCAAGAAAA
* * * * * *
2136240 GCTTTTCTTGCAACCGT-TTTTGAC--ATAATCA
128 TC-TTTCTT--TACCCTATTTT-CCTTAAAATCG
* * * * * * * * *
2136271 AAGTTCGTCTCTTAAATAGGACAAACAAGAATACTCATATTAATC-CCAATTCTTTTAAG-GGTT
1 AAGTTCGTC-CTTAAATAAGACAAACATGGATTCACATAATAATCTTC-ATTCATTT-AGTGATT
* * * * ** * * * * * ** * *
2136334 ATGAACCATAACCATTTTCTTCTCATTAGGATAGACGAAATTGATGCTTTGGTTTCACTAGAAAG
63 AGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTAATGCTTTGGTTTTGCAAGAAAA
* ** * * *
2136399 GCTTTCTTCCCACCAATTTT--TGTAAAGTCT
128 TCTTTCTTTAC-CCTATTTTCCT-TAAAATCG
** * * * * * *
2136429 AAGTTCGTGCCTCGAGTGAGACAAACTTGGATTC-CAATAATAATCTTTATTCGTTTTA-TTATT
1 AAGTTCGT-CCTTAAATAAGACAAACATGGATTCAC-ATAATAATCTTCATTC-ATTTAGTGATT
* * * ** * *
2136492 AGGCACTAAAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGGATGAAAA
63 AGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTAATGCTTTGGTTTTGCAAGAAAA
*
2136557 TCTTTTCTTTGCCCTATTTTCCTTAAAATC-
128 TC-TTTCTTTACCCTATTTTCCTTAAAATCG
* * * * ** * * * * *
2136587 ATAGTTCATCGCATAAA-ACTGGCAAACATTAATTCTCTTAATAGTCTCCATTCTTTTCAG-GAT
1 A-AGTTCGTC-CTTAAATA-AGACAAACATGGATTCACATAATAATCTTCATTCATTT-AGTGAT
* * * * * * * * ***
2136650 TTGGAACCA-AAAGCAAATTC-CCTTCATTA-GATACATGACATTGATGCTTTGGTGTCATAAGA
62 TAGGCACTATAAA-CACATTCTCC-TCATTAGGATAAATGATATTAATGCTTTGGTTTTGCAAGA
* * * *** * *
2136712 AAAGCTTTTTTTGCAACC-ATTTTTGATAGAATCA
125 AAATCTTTCTTT--ACCCTATTTTCCTTAAAATCG
* * * * * * * * ** * * *
2136746 AAGTTTGCCTCTTAAATAGGATAAACAAGAATACTCATCCTAATC-CCAATTCTTTTAAG-GGTT
1 AAGTTCGTC-CTTAAATAAGACAAACATGGATTCACATAATAATCTTC-ATTCATTT-AGTGATT
* * * * * * * ** * * * *
2136809 ATGCGCCATAAACA-TTGTCTTCTAATTAGGATAGACAAAATTGATGCTTTAGTTTCGCAAG-AA
63 AGGCACTATAAACACAT-TCTCCTCATTAGGATAAATGATATTAATGCTTTGGTTTTGCAAGAAA
** * * *
2136872 ATGCTTTCTTCCCACCAATTTT--TGTAAAGTCT
127 AT-CTTTCTTTAC-CCTATTTTCCT-TAAAATCG
* * * *
2136904 AAGTTCGTCCCTCAAGTGAGACAAACATGGATTC-CAGTAATAATCTTCATTCATTTTGTGATTA
1 AAGTTCGT-CCTTAAATAAGACAAACATGGATTCACA-TAATAATCTTCATTCATTTAGTGATTA
* * ** * **
2136968 GGTACTAAAAACACATTCTCCTCATTAGTTTAAATGATA-TAGATGGTTTTCTTTTGCAAGAAAA
64 GGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTA-ATGCTTTGGTTTTGCAAGAAAA
* *
2137032 TCTTTACTTTGCCCTATTTTGCTTAAAATCG
128 TCTTT-CTTTACCCTATTTTCCTTAAAATCG
** * * * * * * * * *
2137063 AAGTTTATACCTTAAATAAGGCAAGCATTGATTCTCTTAACAGTCTCCATTCTTTTCAG-GATT-
1 AAGTTCGT-CCTTAAATAAGACAAACATGGATTCACATAATAATCTTCATTCATTT-AGTGATTA
* * * * * * * ** * ***
2137126 GTGAACCAAAAACACATTC-CCTTCGTTAGGATACATGACATTGACACTTTGGTGTCATAAGAAA
64 G-GCACTATAAACACATTCTCC-TCATTAGGATAAATGATATTAATGCTTTGGTTTTGCAAGAAA
** * * *** * * *
2137190 AGGTTTCCCTT-CCATAGTTTTTGATACACTCA
127 ATCTTT-CTTTACCCTA-TTTTCCTTAAAATCG
* * * *** * * ** *
2137222 AAGTTTGTCTTTTAAATAAGACAAACATGAATAGTCATACTAGTCCCCATTCATTTCAG-GATTT
1 AAGTTCGTC-CTTAAATAAGACAAACATGGATTCACATAATAATCTTCATTCATTT-AGTGATTA
* * * * * * * * * * * **
2137286 GGCACCATCAACATAGTCTTCTCATTCGGATAGATGAAATCAATGCTTTGGCTTCGCAAGAAAGG
64 GGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTAATGCTTTGGTTTTGCAAGAAAAT
** * *
2137351 CTTTCTTCT-CACAAATTTT--TGTAAAGTCT
129 CTTTCTT-TAC-CCTATTTTCCT-TAAAATCG
* * * * * * *
2137380 AAGTTCATGCCTCAAATGAGACAAACATGGATTCTA-GTAATGATCTTCATTCATTTTGTAATTA
1 AAGTTCGT-CCTTAAATAAGACAAACATGGATTC-ACATAATAATCTTCATTCATTTAGTGATTA
* * * * * * * ** *
2137444 GACACGATAAACATATTCTTCTCATTAGGATAAATAATATTGATGGTTTCTTTTTGCATGAAAAT
64 GGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTAATGCTTTGGTTTTGCAAGAAAAT
2137509 CTTTTCTTTACCCTATTTTCCTTAAAATCG
129 C-TTTCTTTACCCTATTTTCCTTAAAATCG
* * * * * * * * *
2137539 TAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCTTAACAATC-TCAATT--TTGTCA-AGAT
1 AAGTTCGT-CCTTAAATAAGACAAACATGGATTCACATAATAATCTTC-ATTCATT-T-AGTGAT
* * * ** * * * *
2137600 T-GGGAATAAAAACACATTC-CCATTGTTAGGATACATGACA-TAGATGCTTTGGTGTCGCAAGA
62 TAGGCACTATAAACACATTCTCC-TCATTAGGATAAATGATATTA-ATGCTTTGGTTTTGCAAGA
* * * ** * *
2137662 AAAGGT-TTTCCTTCCACCGATTTT-GATAGAATCA
125 AAA--TCTTTCTTTAC-CCTATTTTCCTTAAAATCG
* * * *** * ** *
2137696 AAGTTTGTCTCTTAATTAAGACAAACATGAATAGTCATACTAATCCCCATTCACTTTAG-GATTT
1 AAGTTCGTC-CTTAAATAAGACAAACATGGATTCACATAATAATCTTCATTCA-TTTAGTGATTA
* * * * * * * * * * *
2137760 GGCACCATAAACATAGTCTTCTCATTATGATAGATAAAATTGATGATTTGGATTCT-CAAGAAAG
64 GGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTAATGCTTTGG-TTTTGCAAGAAA-
** * * ** *
2137824 A-CTTTCTTGCCACCAATTTTTGC-T-ATGTCT
127 ATCTTTCTTTAC-CCTA-TTTTCCTTAAAATCG
* * * * * * *
2137854 AAGTTCGTGCCTCAAATGAGACAAACATGGATTCTA-GTAATGATCTTCAATCATTTTGAGATTA
1 AAGTTCGT-CCTTAAATAAGACAAACATGGATTC-ACATAATAATCTTCATTCATTTAGTGATTA
* * * * *** *
2137918 GGCACTATAAACGCATTCTCCTCTTTAGGAGAAATGATA-TAGATGGTTTTCATTTGCATGAAAA
64 GGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTA-ATGCTTTGGTTTTGCAAGAAAA
*
2137982 TCTTTTCTTTGCCCTATTTTCCTTAAAATCG
128 TC-TTTCTTTACCCTATTTTCCTTAAAATCG
2138013 TAGGTCATCC
Statistics
Matches: 2618, Mismatches: 978, Indels: 408
0.65 0.24 0.10
Matches are distributed among these distances:
154 5 0.00
155 108 0.04
156 9 0.00
157 245 0.09
158 1031 0.39
159 997 0.38
160 203 0.08
161 15 0.01
162 5 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (157 bp):
AAGTTCGTCCTTAAATAAGACAAACATGGATTCACATAATAATCTTCATTCATTTAGTGATTAGG
CACTATAAACACATTCTCCTCATTAGGATAAATGATATTAATGCTTTGGTTTTGCAAGAAAATCT
TTCTTTACCCTATTTTCCTTAAAATCG
Found at i:2135050 original size:476 final size:476
Alignment explanation
Indices: 2133858--2138498 Score: 5452
Period size: 476 Copynumber: 9.8 Consensus size: 476
2133848 GTTGTCATCA
* * * * * *
2133858 CAAGAAAAACTTTTCTTGCAGCCATTTTGGATAGAATCAAAGTTTTTCTCTTAAATAAGACAAGC
1 CAAGAAAAGCTTTTCTTGCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
* * * ** * *
2133923 ATGAATACTCAGATTAATCCTCATTCTTTTAAGGATTAGATACCATAAACATAGTCTTCTTATTA
66 ATGAATACTCATACTAATCCCCATTCTTTTAAGGATTAGGCACCATAAACTTAGTCTTCTCATTA
* *** * ** *
2133988 AGATAGACGCAA-TGATGCATTCCTTTCACAAGAAAGGCTTTCTTGCCACCAATTTTTGTAAAGT
131 GGATAGATAAAATTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGT
* * *
2134052 TTAAGTTCGTACCTTAAATGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATT
196 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATT
* * * * *
2134117 AGCCACTACAAACACATTGTCCTCATTAGGATAAATGATATTGATTGTTTTCTTTTGCATGAAAA
261 AGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTAATGGTTTTCTTTTGCATGAAAA
* *
2134182 TCTTTTCTTTACCCTATTTTCCTTAAAATCGAAGTTCATCCCTTAAATAAGGCAAGCATTGATCC
326 TCTTTTCTTTGCCCTATTTTCCTTAAAATCGAAGTTCATCCCTTAAATAAGGCAAGCATTGATTC
* * * * * *
2134247 TCATAACAGTCTCTATTCTTTTCAAGATTGGGAACCATAAACACATTCCTTTCATTAGGATACCT
391 TCTTAACAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACAT
*
2134312 TACATTGATGCTTTGGTGTCG
456 GACATTGATGCTTTGGTGTCG
* * *
2134333 CAAGAAAAG----TCTTGCGACTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAG
1 CAAGAAAAGCTTTTCTTGCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
* * * * *
2134394 TTGAATACTCATACTAATCCCCATTCTTTTCAGGATTTGGCACTATAAACATAGTCTTCTCATTA
66 ATGAATACTCATACTAATCCCCATTCTTTTAAGGATTAGGCACCATAAACTTAGTCTTCTCATTA
* *
2134459 GGATAGATTAAATTGATGCTTTGGTTTTACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGT
131 GGATAGATAAAATTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGT
*
2134524 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTC-ACGTAATAATCTTCATTCATTTGGTGAT
196 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTA-GTAATAATCTTCATTCATTTTGTGAT
* **
2134588 TAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTAATGATTTT-TTTTGCCCGAAA
260 TAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTAATGGTTTTCTTTTGCATGAAA
* * *
2134652 ATCTTTTCTTTACCCTATTTTCCTTAAAATCGAAGTTCATCTCTTAAATAAGGCAACCATTGATT
325 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCGAAGTTCATCCCTTAAATAAGGCAAGCATTGATT
* * *
2134717 CTCTTAACAGTCTCCATTCTTTTCAAGATTGGGAATCAAAAACACATTCCCTTCATTAGGATTCA
390 CTCTTAACAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACA
* *
2134782 TGACATTGACGCTTTGGGGGTCG
455 TGACATTGATGCTTT-GGTGTCG
** * * * * *
2134805 TGAGAAAAACTTTTCATGCAACCGTTTTTGATAGAATCAAAGTTTATGTCTTAAATAGGACAAAC
1 CAAGAAAAGCTTTTCTTGCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
* * * *
2134870 ATGAATACTCATACTAATCCCCATACTTTTAAGGATTACGCACCATAAACTTAGCCTTCTCATAA
66 ATGAATACTCATACTAATCCCCATTCTTTTAAGGATTAGGCACCATAAACTTAGTCTTCTCATTA
* * * * * * *
2134935 GGATACATGATATTGACGCTTTAGTTTCATAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAATT
131 GGATAGATAAAATTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGT
* * * * *
2135000 TTAAGTTCGTGCCTCAAATGAGACAAACATGGGTTCTAGCAATGATCTTCATTCATTTTGTGAGT
196 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATT
* * * * *
2135065 AGGCACTATAAAAACACTCTCCTCATTAGGATAAATGATATTGATTGTTTTCTTTTACATGAAAA
261 AGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTAATGGTTTTCTTTTGCATGAAAA
* * *
2135130 TCTTTTCTTTACCCTATTTTCCTTAAAATCGATGTTTATCCCTTAAATAAGGCAAGCATTGATTC
326 TCTTTTCTTTGCCCTATTTTCCTTAAAATCGAAGTTCATCCCTTAAATAAGGCAAGCATTGATTC
* * * * * * * *
2135195 TCGTAATAGCCTACATTATTTTCAGGATTAGGAACCAAAAACACATTCCCTTCATTACGATACAA
391 TCTTAACAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACAT
* * *
2135260 GACATGGATGCTTTGGGGTTG
456 GACATTGATGCTTTGGTGTCG
* * * *
2135281 CAAGAAAAGCTTTTCTTGCAACCTTTTTTTATAAAATCAAAGTTTGTCTCTTAAATAAGGCCAAA
1 CAAGAAAAGCTTTTCTTGCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA-GACAAA
* * *
2135346 CATGAGTACTCATACTAATCCCCATTCTTTTAAGGATTATGCACCATAAACTTAGTCTTGTCA-T
65 CATGAATACTCATACTAATCCCCATTCTTTTAAGGATTAGGCACCATAAACTTAGTCTTCTCATT
* * * **
2135410 ATGGATACATAATATTGACT-CTTTAGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTTGTAA
130 A-GGATAGATAAAATTGA-TGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAA
* * * * * * * *
2135474 AGTTTAAGTTCTTGCCTCAAAAGGGACAAATATGAATTCTACTAATAATCTTCATTCATTTTATG
193 AGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTG
* * * **
2135539 ATTAGGCACTATAAACACCTTCTCCTTATTAGGATAAATGATATTGATATTTTTCTTTTGCATGA
258 ATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTAATGGTTTTCTTTTGCATGA
* * * *
2135604 AAATCTTTTCCTTGCCCTATTTTCCTTAAAATCGTAGTTTATCCCATAAATAAGGCAAGCATTGA
323 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCGAAGTTCATCCCTTAAATAAGGCAAGCATTGA
* * * *
2135669 TTCTCTTAACAGTCTCCATTTTTTTCAGGATTGGGAACCAAAAGCATATTCTCTTCATTAGGATA
388 TTCTCTTAACAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATA
* *
2135734 CATGACATTGATGCTTTGGGGTCA
453 CATGACATTGATGCTTTGGTGTCG
* * * *
2135758 CAA-AAAGGCTTTTCCTGCAATCGTTTTTGATAGAATCAAAGTTTTTCTCTTAAATAAGACAAAC
1 CAAGAAAAGCTTTTCTTGCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
* * ** * **
2135822 ATGAATAGTCATACTAATCGCCATTCTTTTCTGGATTTGGCACCATGCA-TGTAGTCTTCTCATT
66 ATGAATACTCATACTAATCCCCATTCTTTTAAGGATTAGGCACCATAAACT-TAGTCTTCTCATT
* * * * * * *
2135886 AGGACAGACAAAATTGATGCTTTGGATTCGCAAGAAAGACTTTCTTGCCA-CAATTTTTGTTAAG
130 AGGATAGATAAAATTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAG
* *
2135950 TCTAAATTCGTGCCTCAAATGAGACAAACATAGATTCTAGTAATAATCTTCATTCATTTTGTGAT
195 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGAT
* * * * *
2136015 TAGGCACTAAAAACACACTCTCCTCATTGGGATAAATAATATTGATGGTTTTCTTTTGCATGAAA
260 TAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTAATGGTTTTCTTTTGCATGAAA
* * * * *
2136080 ATATTTTCTTTGCCCTATTTTTCTTAAAATCGATGTTTATCCCTTAAATATGGCAAGCATTGATT
325 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCGAAGTTCATCCCTTAAATAAGGCAAGCATTGATT
* * * * * * * ** * **
2136145 CTCGTAATAGCCTACAGTATTTTCAGGATTGGGAACCAAAAACACTTTCTTTTCATTATGATATG
390 CTCTTAACAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACA
* *
2136210 TGACATTGATGCTTTGGGGTTG
455 TGACATTGATGCTTTGGTGTCG
* * * *
2136232 CAAGAAAAGCTTTTCTTGCAACCGTTTTTGACATAATCAAAGTTCGTCTCTTAAATAGGACAAAC
1 CAAGAAAAGCTTTTCTTGCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
* * * * * * * *
2136297 AAGAATACTCATATTAATCCCAATTCTTTTAAGGGTTATGAACCATAACCATT-TTCTTCTCATT
66 ATGAATACTCATACTAATCCCCATTCTTTTAAGGATTAGGCACCATAAAC-TTAGTCTTCTCATT
** *
2136361 AGGATAGACGAAATTGATGCTTTGGTTTCACTAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAG
130 AGGATAGATAAAATTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAG
* * * * * * * * *
2136426 TCTAAGTTCGTGCCTCGAGTGAGACAAACTTGGATTCCAATAATAATCTTTATTCGTTTTATTAT
195 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGAT
* * *
2136491 TAGGCACTAAAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGGATGAAA
260 TAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTAATGGTTTTCTTTTGCATGAAA
* * * * *
2136556 ATCTTTTCTTTGCCCTATTTTCCTTAAAATC-ATAGTTCATCGCATAAA-ACTGGCAAACATTAA
325 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCGA-AGTTCATCCCTTAAATA-AGGCAAGCATTGA
* * * *
2136619 TTCTCTTAATAGTCTCCATTCTTTTCAGGATTTGGAACCAAAAGCAAATTCCCTTCATTA-GATA
388 TTCTCTTAACAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATA
*
2136683 CATGACATTGATGCTTTGGTGTCA
453 CATGACATTGATGCTTTGGTGTCG
* * * * * *
2136707 TAAGAAAAGCTTTTTTTGCAACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAGGATAAAC
1 CAAGAAAAGCTTTTCTTGCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
* * * * * * *
2136772 AAGAATACTCATCCTAATCCCAATTCTTTTAAGGGTTATGCGCCATAAACATT-GTCTTCTAATT
66 ATGAATACTCATACTAATCCCCATTCTTTTAAGGATTAGGCACCATAAAC-TTAGTCTTCTCATT
* * * *
2136836 AGGATAGACAAAATTGATGCTTTAGTTTCGCAAGAAATGCTTTCTTCCCACCAATTTTTGTAAAG
130 AGGATAGATAAAATTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAG
* * *
2136901 TCTAAGTTCGTCCCTCAAGTGAGACAAACATGGATTCCAGTAATAATCTTCATTCATTTTGTGAT
195 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGAT
* * ** *
2136966 TAGGTACTAAAAACACATTCTCCTCATTAGTTTAAATGATA-TAGATGGTTTTCTTTTGCAAGAA
260 TAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTA-ATGGTTTTCTTTTGCATGAA
* * * *
2137030 AATCTTTACTTTGCCCTATTTTGCTTAAAATCGAAGTTTATACCTTAAATAAGGCAAGCATTGAT
324 AATCTTTTCTTTGCCCTATTTTCCTTAAAATCGAAGTTCATCCCTTAAATAAGGCAAGCATTGAT
* *
2137095 TCTCTTAACAGTCTCCATTCTTTTCAGGATTGTGAACCAAAAACACATTCCCTTCGTTAGGATAC
389 TCTCTTAACAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATAC
** *
2137160 ATGACATTGACACTTTGGTGTCA
454 ATGACATTGATGCTTTGGTGTCG
* * * * * * *
2137183 TAAGAAAAGGTTTCCCTTCCATA--GTTTTTGATACACTCAAAGTTTGTCTTTTAAATAAGACAA
1 CAAGAAAAGCTTT-TCTTGCA-ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
* * * * * * *
2137246 ACATGAATAGTCATACTAGTCCCCATTCATTTCAGGATTTGGCACCATCAACATAGTCTTCTCAT
64 ACATGAATACTCATACTAATCCCCATTCTTTTAAGGATTAGGCACCATAAACTTAGTCTTCTCAT
* * ** * * * *
2137311 TCGGATAGATGAAATCAATGCTTTGGCTTCGCAAGAAAGGCTTTCTTCTCACAAATTTTTGTAAA
129 TAGGATAGATAAAATTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAA
* * *
2137376 GTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTAA
194 GTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGA
* * * * * *
2137441 TTAGACACGATAAACATATTCTTCTCATTAGGATAAATAATATTGATGG-TTTCTTTTTGCATGA
259 TTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTAATGGTTTTC-TTTTGCATGA
* *
2137505 AAATCTTTTCTTTACCCTATTTTCCTTAAAATCGTAGTTCATCCCTTAAATAAGGCAAGCATTGA
323 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCGAAGTTCATCCCTTAAATAAGGCAAGCATTGA
* * * * * *
2137570 TTCTCTTAACAATCTCAATT-TTGTCAAGATTGGGAA-TAAAAACACATTCCCATT-GTTAGGAT
388 TTCTCTTAACAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCC-TTCATTAGGAT
*
2137632 ACATGACATAGATGCTTTGGTGTCG
452 ACATGACATTGATGCTTTGGTGTCG
* * * *
2137657 CAAGAAAAGGTTTTCCTT-CCACCGATTTTGATAGAATCAAAGTTTGTCTCTTAATTAAGACAAA
1 CAAGAAAAGCTTTT-CTTGCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAA
* * * *
2137721 CATGAATAGTCATACTAATCCCCATTCACTTT-AGGATTTGGCACCATAAACATAGTCTTCTCAT
65 CATGAATACTCATACTAATCCCCATTC-TTTTAAGGATTAGGCACCATAAACTTAGTCTTCTCAT
* * * * * *
2137785 TATGATAGATAAAATTGATGATTTGGATTCTCAAGAAAGACTTTCTTGCCACCAATTTTTGCT-A
129 TAGGATAGATAAAATTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTG-TAA
* * * *
2137849 TGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCAATCATTTTGAG
193 AGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTG
* * * *
2137914 ATTAGGCACTATAAACGCATTCTCCTCTTTAGGAGAAATGATA-TAGATGGTTTTCATTTGCATG
258 ATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTA-ATGGTTTTCTTTTGCATG
* * *
2137978 AAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCGTAGGTCATCCCATAAATAAGGCAAGCATTG
322 AAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCGAAGTTCATCCCTTAAATAAGGCAAGCATTG
* * * *
2138043 ATTCTCTTAACAATATCCATT-TTTTCAAGATTGGGAA-CAAAAACACATTCCCTTCGTTAGGAT
387 ATTCTCTTAACAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGAT
* * *
2138106 ACATAACATGGATGCTTTGGTGTCA
452 ACATGACATTGATGCTTTGGTGTCG
* * * ** * * *
2138131 TAAGAAAAGGTTTTCTTTCCTCCATTTTCGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAAC
1 CAAGAAAAGCTTTTCTTGCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
* * * *
2138196 ATGAATAGTCTTACTAATCCCCATTCTTTTCCA-GATTCGGCA-C-T--A--TA-------C---
66 ATGAATACTCATACTAATCCCCATTCTTTT-AAGGATTAGGCACCATAAACTTAGTCTTCTCATT
* ** *
2138244 -------ACAAAATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTCCCACCAATTTTTGTAATG
130 AGGATAGATAAAATTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAG
* * * * * *
2138302 TCTAAGTTCATGCCTCAAGTTAGACAAACATGGATTCTACTAATAATCATCATTCATTTTGTTAT
195 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGAT
* ** * * * **
2138367 TAGGCACT-CAAACATGTTCTCCTCATTAGGATAAATGGTATTGATGGTTTTCTTTTGAACAAAA
260 TAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTAATGGTTTTCTTTTGCATGAAA
* * ** * * *
2138431 ATATTTTGTTTGAACTACTTTT-CTTAAAATCAAAGTTCATCCCTTAAAAAAGGTAAGCATTGAT
325 ATCTTTTCTTTGCCCTA-TTTTCCTTAAAATCGAAGTTCATCCCTTAAATAAGGCAAGCATTGAT
2138495 TCTC
389 TCTC
2138499 ATAATAGTGA
Statistics
Matches: 3598, Mismatches: 523, Indels: 115
0.85 0.12 0.03
Matches are distributed among these distances:
450 96 0.03
451 118 0.03
461 1 0.00
468 2 0.00
470 1 0.00
471 251 0.07
472 165 0.05
473 11 0.00
474 796 0.22
475 689 0.19
476 953 0.26
477 514 0.14
478 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (476 bp):
CAAGAAAAGCTTTTCTTGCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
ATGAATACTCATACTAATCCCCATTCTTTTAAGGATTAGGCACCATAAACTTAGTCTTCTCATTA
GGATAGATAAAATTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGT
CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATT
AGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTAATGGTTTTCTTTTGCATGAAAA
TCTTTTCTTTGCCCTATTTTCCTTAAAATCGAAGTTCATCCCTTAAATAAGGCAAGCATTGATTC
TCTTAACAGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACAT
GACATTGATGCTTTGGTGTCG
Found at i:2136119 original size:951 final size:949
Alignment explanation
Indices: 2133867--2138498 Score: 5430
Period size: 951 Copynumber: 4.9 Consensus size: 949
2133857 ACAAGAAAAA
* * * * * *
2133867 CTTTTCTTGCAGCCATTTTGGATAGAATCAAAGTTTTTCTCTTAAATAAGACAAGCATGAATACT
1 CTTTTCCTGCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACT
* * * ** * * * *
2133932 CAGATTAATCCTCATTCTTTTAAGGATTAGATACCATAAACATAGTCTTCTTATTAAGATAGACG
66 CATACTAATCC-CATTCTTTTAAGGATTTGGCACCATAAA-TTAGTCTTCTCATTAGGATAGACA
* * ** * *
2133997 CAA-TGATGCATTCCTTTCACAAGAAAGGCTTTCTTGCCACCAATTTTTGTAAAGTTTAAGTTCG
129 AAATTGATGCTTTAGTTTCACAAGAAAGACTTTCTTGCCACCAATTTTTGTAAAGTCTAAGTTCG
* * * *
2134061 TACCTTAAATGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGCCACTAC
194 TGCCTCAAATGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAA
* *
2134126 AAACACATTGTCCTCATTAGGATAAATGATATTGATTGTTTTCTTTTGCATGAAAATCTTTTCTT
259 AAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTT
* * * * *
2134191 TACCCTATTTTCCTTAAAATCGAAGTTCATCCCTTAAATAAGGCAAGCATTGATCCTCATAACAG
324 TGCCCTATTTTCCTTAAAATCGATGTTTATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAG
* * * * * *
2134256 TCT-CTATTCTTTTCAAGATTGGGAACCATAAACACATTCCTTTCATTAGGATACCTTACATTGA
389 TCTAC-ATTATTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGA
* * *
2134320 TGCTTTGGTGTCGCAAGAAAAG----TCTTGCGACTGTTTTTGATAGAATCAAAGTTTGTCTCTT
453 TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTGCAACCGTTTTTGATAAAATCAAAGTTTGTCTCTT
** * *
2134381 AAATAAGACAAAGTTGAATACTCATACTAATCCCCATTCTTTTCAGGATTTGGCACTATAAACAT
518 AAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTAAGGATTTGGCACCATAAACAT
* **
2134446 AGTCTTCTCATTAGGATAGATTAAATTGATGCTTTGGTTTTACAAGAAAGGCTTTCTTCCCACCA
583 AGTCTTCTCATTAGGATAGACTAAATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCA
2134511 ATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTC-ACGTAATAATCTTCA
648 ATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAC-TAATAATCTTCA
** *
2134575 TTCATTTGGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTAAT-GATTT
712 TTCATTTTATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATAG-TTT
** * * *
2134639 T-TTTTGCCCGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCGAAGTTCATCTCTTAAATAA
776 TCTTTTGCATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCGTAGTTCATCCCATAAATAA
* *
2134703 GGCAACCATTGATTCTCTTAACAGTCTCCATTCTTTTCAAGATTGGGAATCAAAAACACATTCCC
841 GGCAAGCATTGATTCTCTTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCC
* * *
2134768 TTCATTAGGATTCATGACATTGACGCTTTGGGGGTCGTGAGAAAAA--
906 TTCATTAGGATACATGACATTGATGCTTT-GGGGTC---ACAAAAAGG
* * * *
2134814 CTTTTCATGCAACCGTTTTTGATAGAATCAAAGTTTATGTCTTAAATAGGACAAACATGAATACT
1 CTTTTCCTGCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACT
* ** * * * **
2134879 CATACTAATCCCCATACTTTTAAGGATTACGCACCATAAACTTAGCCTTCTCATAAGGATACATG
66 CATACTAAT-CCCATTCTTTTAAGGATTTGGCACCATAAA-TTAGTCTTCTCATTAGGATAGACA
* * * * * * *
2134944 ATATTGACGCTTTAGTTTCATAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAATTTTAAGTTCG
129 AAATTGATGCTTTAGTTTCACAAGAAAGACTTTCTTGCCACCAATTTTTGTAAAGTCTAAGTTCG
* * * *
2135009 TGCCTCAAATGAGACAAACATGGGTTCTAGCAATGATCTTCATTCATTTTGTGAGTAGGCACTAT
194 TGCCTCAAATGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTA-
* * *
2135074 AAAA-ACACTCTCCTCATTAGGATAAATGATATTGATTGTTTTCTTTTACATGAAAATCTTTTCT
258 AAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCT
* *
2135138 TTACCCTATTTTCCTTAAAATCGATGTTTATCCCTTAAATAAGGCAAGCATTGATTCTCGTAATA
323 TTGCCCTATTTTCCTTAAAATCGATGTTTATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACA
* * * * *
2135203 GCCTACATTATTTTCAGGATTAGGAACCAAAAACACATTCCCTTCATTACGATACAAGACATGGA
388 GTCTACATTATTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGA
* * * *
2135268 TGCTTTGGGGTTGCAAGAAAAGCTTTTCTTGCAACCTTTTTTTATAAAATCAAAGTTTGTCTCTT
453 TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTGCAACCGTTTTTGATAAAATCAAAGTTTGTCTCTT
* *
2135333 AAATAAGGCCAAACATGAGTACTCATACTAATCCCCATTCTTTTAAGGATTAT-GCACCATAAAC
518 AAATAA-GACAAACATGAATACTCATACTAATCCCCATTCTTTTAAGGATT-TGGCACCATAAAC
* * * * *
2135397 TTAGTCTTGTCA-TATGGATACA-TAATATTGACT-CTTTAGTTTCGTAAGAAAGGCTTTCTTCC
581 ATAGTCTTCTCATTA-GGATAGACTAA-ATTGA-TGCTTTGGTTTCGCAAGAAAGGCTTTCTTCC
* * * * * *
2135459 CACCAATTTTTGTAAAGTTTAAGTTCTTGCCTCAAAAGGGACAAATATGAATTCTACTAATAATC
643 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTACTAATAATC
* * *
2135524 TTCATTCATTTTATGATTAGGCACTATAAACACCTTCTCCTTATTAGGATAAATGATATTGATAT
708 TTCATTCATTTTATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATAG
* * *
2135589 TTTTCTTTTGCATGAAAATCTTTTCCTTGCCCTATTTTCCTTAAAATCGTAGTTTATCCCATAAA
773 TTTTCTTTTGCATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCGTAGTTCATCCCATAAA
* * * *
2135654 TAAGGCAAGCATTGATTCTCTTAACAGTCTCCATTTTTTTCAGGATTGGGAACCAAAAGCATATT
838 TAAGGCAAGCATTGATTCTCTTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATT
*
2135719 CTCTTCATTAGGATACATGACATTGATGCTTTGGGGTCACAAAAAGG
903 CCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCACAAAAAGG
* * *
2135766 CTTTTCCTGCAATCGTTTTTGATAGAATCAAAGTTTTTCTCTTAAATAAGACAAACATGAATAGT
1 CTTTTCCTGCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACT
** ** *
2135831 CATACTAATCGCCATTCTTTTCTGGATTTGGCACCATGCATGTAGTCTTCTCATTAGGACAGACA
66 CATACTAATC-CCATTCTTTTAAGGATTTGGCACCATAAAT-TAGTCTTCTCATTAGGATAGACA
* * * * *
2135896 AAATTGATGCTTTGGATTCGCAAGAAAGACTTTCTTGCCA-CAATTTTTGTTAAGTCTAAATTCG
129 AAATTGATGCTTTAGTTTCACAAGAAAGACTTTCTTGCCACCAATTTTTGTAAAGTCTAAGTTCG
*
2135960 TGCCTCAAATGAGACAAACATAGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAA
194 TGCCTCAAATGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAA
* * * *
2136025 AAACACACTCTCCTCATTGGGATAAATAATATTGATGGTTTTCTTTTGCATGAAAATATTTTCTT
259 AAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTT
* * *
2136090 TGCCCTATTTTTCTTAAAATCGATGTTTATCCCTTAAATATGGCAAGCATTGATTCTCGTAATAG
324 TGCCCTATTTTCCTTAAAATCGATGTTTATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAG
* * * ** * **
2136155 CCTACAGTATTTTCAGGATTGGGAACCAAAAACACTTTCTTTTCATTATGATATGTGACATTGAT
389 TCTACATTATTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGAT
* * * * *
2136220 GCTTTGGGGTTGCAAGAAAAGCTTTTCTTGCAACCGTTTTTGACATAATCAAAGTTCGTCTCTTA
454 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTGCAACCGTTTTTGATAAAATCAAAGTTTGTCTCTTA
* * * * * * *
2136285 AATAGGACAAACAAGAATACTCATATTAATCCCAATTCTTTTAAGGGTTAT-GAACCATAACCAT
519 AATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTAAGGATT-TGGCACCATAAACAT
** * * *
2136349 TTTCTTCTCATTAGGATAGACGAAATTGATGCTTTGGTTTCACTAGAAAGGCTTTCTTCCCACCA
583 AGTCTTCTCATTAGGATAGACTAAATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCA
* * * * * *
2136414 ATTTTTGTAAAGTCTAAGTTCGTGCCTCGAGTGAGACAAACTTGGATTCCAATAATAATCTTTAT
648 ATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTACTAATAATCTTCAT
* * * *
2136479 TCGTTTTATTATTAGGCACTAAAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTC
713 TCATTTTATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATAGTTTTC
* * * * *
2136544 TTTTGGATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCATAGTTCATCGCATAAA-ACTG
778 TTTTGCATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCGTAGTTCATCCCATAAATA-AG
* * * * * * *
2136608 GCAAACATTAATTCTCTTAATAGTCTCCATTCTTTTCAGGATTTGGAACCAAAAGCAAATTCCCT
842 GCAAGCATTGATTCTCTTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCT
* * *
2136673 TCATTA-GATACATGACATTGATGCTTTGGTGTCATAAGAAAAG
907 TCATTAGGATACATGACATTGATGCTTTGGGGTCACAA-AAAGG
** * * * * *
2136716 CTTTTTTTGCAACCATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAGGATAAACAAGAATACT
1 CTTTTCCTGCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACT
* * * *
2136781 CATCCTAATCCCAATTCTTTTAAGGGTTAT-GCGCCATAAACATT-GTCTTCTAATTAGGATAGA
66 CATACTAATCCC-ATTCTTTTAAGGATT-TGGCACCAT-AA-ATTAGTCTTCTCATTAGGATAGA
* *
2136844 CAAAATTGATGCTTTAGTTTCGCAAGAAATG-CTTTCTTCCCACCAATTTTTGTAAAGTCTAAGT
127 CAAAATTGATGCTTTAGTTTCACAAGAAA-GACTTTCTTGCCACCAATTTTTGTAAAGTCTAAGT
* * * *
2136908 TCGTCCCTCAAGTGAGACAAACATGGATTCCAGTAATAATCTTCATTCATTTTGTGATTAGGTAC
191 TCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCAC
** * * *
2136973 TAAAAACACATTCTCCTCATTAGTTTAAATGATATAGATGGTTTTCTTTTGCAAGAAAATCTTTA
256 TAAAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTT
* * * *
2137038 CTTTGCCCTATTTTGCTTAAAATCGAAGTTTATACCTTAAATAAGGCAAGCATTGATTCTCTTAA
321 CTTTGCCCTATTTTCCTTAAAATCGATGTTTATCCCTTAAATAAGGCAAGCATTGATTCTCGTAA
* * * *
2137103 CAGTCTCCATTCTTTTCAGGATTGTGAACCAAAAACACATTCCCTTCGTTAGGATACATGACATT
386 CAGTCTACATTATTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATT
** ** * * * * *
2137168 GACACTTTGGTGTCATAAGAAAAGGTTTCCCTTCCATA--GTTTTTGATACACTCAAAGTTTGTC
451 GATGCTTTGGTGTCGCAAGAAAAGCTTT-TCTTGCA-ACCGTTTTTGATAAAATCAAAGTTTGTC
* * * * * *
2137231 TTTTAAATAAGACAAACATGAATAGTCATACTAGTCCCCATTCATTTCAGGATTTGGCACCATCA
514 TCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTAAGGATTTGGCACCATAA
* ** * *
2137296 ACATAGTCTTCTCATTCGGATAGA-TGAAATCAATGCTTTGGCTTCGCAAGAAAGGCTTTCTTCT
579 ACATAGTCTTCTCATTAGGATAGACT-AAATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCC
* * * *
2137360 CACAAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATC
643 CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTACTAATAATC
* * * * * * *
2137425 TTCATTCATTTTGTAATTAGACACGATAAACATATTCTTCTCATTAGGATAAATAATATTGAT-G
708 TTCATTCATTTTATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATAG
* *
2137489 GTTTCTTTTTGCATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCGTAGTTCATCCCTTAA
773 TTTTC-TTTTGCATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCGTAGTTCATCCCATAA
* * * *
2137554 ATAAGGCAAGCATTGATTCTCTTAACAATCTCAATT-TTGTCAAGATTGGGAA-TAAAAACACAT
837 ATAAGGCAAGCATTGATTCTCTTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACAT
* * * *
2137617 TCCCATT-GTTAGGATACATGACATAGATGCTTTGGTGTCGCAAGAAAAGG
902 TCCC-TTCATTAGGATACATGACATTGATGCTTTGGGGTCAC-A-AAAAGG
* * * * *
2137667 -TTTTCCTTCCACCGATTTTGATAGAATCAAAGTTTGTCTCTTAATTAAGACAAACATGAATAGT
1 CTTTTCCTGCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACT
* * * *
2137731 CATACTAATCCCCATTCACTTT-AGGATTTGGCACCATAAACATAGTCTTCTCATTATGATAGAT
66 CATACTAAT-CCCATTC-TTTTAAGGATTTGGCACCATAAA-TTAGTCTTCTCATTAGGATAGAC
* * * * *
2137795 AAAATTGATGATTTGGATTCTCAAGAAAGACTTTCTTGCCACCAATTTTTGCT-ATGTCTAAGTT
128 AAAATTGATGCTTTAGTTTCACAAGAAAGACTTTCTTGCCACCAATTTTTG-TAAAGTCTAAGTT
* * *
2137859 CGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCAATCATTTTGAGATTAGGCACT
192 CGTGCCTCAAATGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACT
* * * * * *
2137924 ATAAACGCATTCTCCTCTTTAGGAGAAATGATATAGATGGTTTTCATTTGCATGAAAATCTTTTC
257 AAAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTC
* * * *
2137989 TTTGCCCTATTTTCCTTAAAATCG-TAGGTCATCCCATAAATAAGGCAAGCATTGATTCTCTTAA
322 TTTGCCCTATTTTCCTTAAAATCGAT-GTTTATCCCTTAAATAAGGCAAGCATTGATTCTCGTAA
* * * * * * *
2138053 CAATATCCATT-TTTTCAAGATTGGGAA-CAAAAACACATTCCCTTCGTTAGGATACATAACATG
386 CAGTCTACATTATTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATT
** * * ** * *
2138116 GATGCTTTGGTGTCATAAGAAAAGGTTTTCTTTCCTCCATTTTCGATAAAATCAAAGTTTGTCTC
451 GATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTGCAACCGTTTTTGATAAAATCAAAGTTTGTCTC
* * * *
2138181 TTAAATAAGACAAACATGAATAGTCTTACTAATCCCCATTCTTTTCCA-GATTCGGCA-C-T---
516 TTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTT-AAGGATTTGGCACCATAAA
* *
2138240 -ATA-------C----------ACAAAATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTCCCA
580 CATAGTCTTCTCATTAGGATAGACTAAATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCA
* * * * *
2138287 CCAATTTTTGTAATGTCTAAGTTCATGCCTCAAGTTAGACAAACATGGATTCTACTAATAATCAT
645 CCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTACTAATAATCTT
* * * ** * *
2138352 CATTCATTTTGTTATTAGGCACT-CAAACATGTTCTCCTCATTAGGATAAATGGTATTGATGGTT
710 CATTCATTTTATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATAGTT
* ** * * * ** *
2138416 TTCTTTTGAACAAAAATATTTTGTTTGA-ACTACTTTT-CTTAAAATCAAAGTTCATCCCTTAAA
775 TTCTTTTGCATGAAAATCTTTTCTTT-ACCCTA-TTTTCCTTAAAATCGTAGTTCATCCCATAAA
* *
2138479 AAAGGTAAGCATTGATTCTC
838 TAAGGCAAGCATTGATTCTC
2138499 ATAATAGTGA
Statistics
Matches: 3174, Mismatches: 454, Indels: 137
0.84 0.12 0.04
Matches are distributed among these distances:
924 95 0.03
925 124 0.04
935 1 0.00
942 3 0.00
946 1 0.00
947 112 0.04
948 435 0.14
949 73 0.02
950 852 0.27
951 921 0.29
952 193 0.06
953 220 0.07
954 144 0.05
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (949 bp):
CTTTTCCTGCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACT
CATACTAATCCCATTCTTTTAAGGATTTGGCACCATAAATTAGTCTTCTCATTAGGATAGACAAA
ATTGATGCTTTAGTTTCACAAGAAAGACTTTCTTGCCACCAATTTTTGTAAAGTCTAAGTTCGTG
CCTCAAATGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAA
ACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTG
CCCTATTTTCCTTAAAATCGATGTTTATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTC
TACATTATTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
TTTGGTGTCGCAAGAAAAGCTTTTCTTGCAACCGTTTTTGATAAAATCAAAGTTTGTCTCTTAAA
TAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTAAGGATTTGGCACCATAAACATAGT
CTTCTCATTAGGATAGACTAAATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATT
TTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTACTAATAATCTTCATTCA
TTTTATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATAGTTTTCTTT
TGCATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCGTAGTTCATCCCATAAATAAGGCAA
GCATTGATTCTCTTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCAT
TAGGATACATGACATTGATGCTTTGGGGTCACAAAAAGG
Found at i:2143438 original size:18 final size:19
Alignment explanation
Indices: 2143396--2143445 Score: 52
Period size: 18 Copynumber: 2.7 Consensus size: 19
2143386 TCCATCTTCT
2143396 TCTCTCCTC-CTCTTGTCA
1 TCTCTCCTCTCTCTTGTCA
*
2143414 TCCCTCCTCTCTCTAT-T-A
1 TCTCTCCTCTCTCT-TGTCA
*
2143432 TCTCTCCTGTCTCT
1 TCTCTCCTCTCTCT
2143446 CCTCCTATCA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 21 0.78
19 5 0.19
20 1 0.04
ACGTcount: A:0.06, C:0.44, G:0.04, T:0.46
Consensus pattern (19 bp):
TCTCTCCTCTCTCTTGTCA
Found at i:2143457 original size:42 final size:42
Alignment explanation
Indices: 2143402--2143520 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
2143392 TTCTTCTCTC
* * *
2143402 CTCCTCTTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
2143444 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
2143486 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
2143521 TTGAGGGCTA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.08, C:0.45, G:0.03, T:0.44
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:2143461 original size:12 final size:11
Alignment explanation
Indices: 2143435--2143510 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
2143425 TCTATTATCT
*
2143435 CTCCTGTCTCTC
1 CTCCTATCTC-C
2143447 CTCCTATCATCC
1 CTCCTATC-TCC
2143459 CTCCTATCT--
1 CTCCTATCTCC
*
2143468 CTACTATCT--
1 CTCCTATCTCC
*
2143477 CTCCTGTCTCTC
1 CTCCTATCTC-C
2143489 CTCCTATCATCC
1 CTCCTATC-TCC
*
2143501 CTCCTCTCTC
1 CTCCTATCTC
2143511 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:2143462 original size:24 final size:24
Alignment explanation
Indices: 2143426--2143511 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
2143416 CCTCCTCTCT
* *
2143426 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
2143450 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
2143471 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
2143492 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
2143512 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:2143486 original size:18 final size:18
Alignment explanation
Indices: 2143417--2143487 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
2143407 CTTGTCATCC
* *
2143417 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
2143435 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
2143457 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
2143477 CTCCTGTCTCT
1 CTCCTGTCTCT
2143488 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:2146073 original size:474 final size:476
Alignment explanation
Indices: 2145137--2146321 Score: 1564
Period size: 474 Copynumber: 2.5 Consensus size: 476
2145127 TTCATCAAAT
* * * *
2145137 AGTCTCCATTTTTTTCAGGATTGGGAACCAATAACACATTCCCTTCATTAGGATATATGACATTG
1 AGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACACGACATTG
* * *
2145202 ATGCTTTGGGGTCGCAAAAAAAGCTTTTCTAGCGACCGTTTTTGATAGAATCAAA-ATTTGTCTC
66 ATGCTTTGGGGTCGCAAGAAAAGCTTTTCTTGCAACCGTTTTTGATAGAATCAAAGATTTGTCTC
*
2145266 TTAACTAAGACAAACATGAATAATCATACTAATCCCCATTCTTTTAAGGATTACGCACCATAAAC
131 TTAACTAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTAAGGATTACGCACCATAAAC
* * * * ** **
2145331 ATAATCTTCACATTAAGATTGATGAAATTGATGCTTTGGTTTTGCAAGAAAGACTCTCTTGTCAC
196 ATAGTCTTCTCATTAGGATTGACGAAATTGATGCTTTGGTTTCACAAGAAAGACTCTCTTCCCAC
* * * ** *
2145396 CAATTTTTGTAAAGTCTATGTTCGTGCCTCAAATGAGACCAACATAGATTATAGTAGTAATCTTT
261 CAATTTTCGCAAAGTCTATGTTCGTGCCTCAAATGAGACAAACATAGATTATAGTAACAATCTTC
* * * *
2145461 ATTCATTTGTGGGTAGGCACTATAAACACGTTCTCTTCATTAGGATAAATGATATTTATGGCTTT
326 ATTCATTTGTGAGTAGGCACTATAAACACATTCTCTTCAATAGGATAAATGATATTGATGGCTTT
* * * *
2145526 GTTTTGCTTGAAAATTATTTCTTTAACCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAG
391 CTTTTGCTTGAAAATCATTTCTTTAACCAATTTTCCTCAAAATCAAAGTTCATCCCTTAAATAAG
*
2145591 GGAAGCATTGATTCGTGTAAC
456 GCAAGCATTGATTCGTGTAAC
* * * *
2145612 AGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCGTTAGGATACACAACATTA
1 AGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACACGACATTG
* * * *
2145677 ATGCTTTGGTGAT-GCAAGAAAAGGTTTTCTTTTC-ACCGTTTTTGATAGAATCAAAGCTTT-TC
66 ATGCTTTGG-GGTCGCAAGAAAAGCTTTTC-TTGCAACCGTTTTTGATAGAATCAAAGATTTGTC
* * * * *
2145739 TCTTAAATAAGACAAA-ATGAATACTCTTACTAATCCCTATTCTTTTCAGGATTTA-GCAACATA
129 TCTTAACTAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTAAGGA-TTACGCACCATA
* * * *
2145802 AACATAGTCTTTTCATTAGGATAGACGAAATTGATGCTTTGGTTTCACAAGATAGGCGT-TCTTC
193 AACATAGTCTTCTCATTAGGATTGACGAAATTGATGCTTTGGTTTCACAAGAAAGAC-TCTCTTC
* * * *
2145866 CCACCAATTTTCGCAAGGTCTATGTTCGTGCCTCAAATTAGACAAACATGGATTCTAGTAACAAT
257 CCACCAATTTTCGCAAAGTCTATGTTCGTGCCTCAAATGAGACAAACATAGATTATAGTAACAAT
* * * *
2145931 CTTCGTTCATTTTGTGATTATGCACTATAAACATATTCT-TCTCAATAGGATAAATGATATTGAT
322 CTTCATTCA-TTTGTGAGTAGGCACTATAAACACATTCTCT-TCAATAGGATAAATGATATTGAT
* * ** *
2145995 GGTTTTCTTTTGCTTGAAAATCGTTT-TTTTCCCAATTTTCCTCAAAATCAAAGTTCATCGCTTA
385 GGCTTTCTTTTGCTTGAAAATCATTTCTTTAACCAATTTTCCTCAAAATCAAAGTTCATCCCTTA
*
2146059 AATAAGGCAAGCATTGATTCTTGTAAC
450 AATAAGGCAAGCATTGATTCGTGTAAC
* ** * *
2146086 AGTCTCCATTCTTTTCAGGATTAGGAA-TGAAAACACATTCCCTTCATTAGGACAGACGACATTG
1 AGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACACGACATTG
** * *
2146150 ACACTTTGGGGTCACAAGAAAAGCTTTTCTTGCAACCGTTTTTGATAGAATC-AAGGTTTGTCTC
66 ATGCTTTGGGGTCGCAAGAAAAGCTTTTCTTGCAACCGTTTTTGATAGAATCAAAGATTTGTCTC
* *
2146214 TTAACTAAGACAAACATGAATACTCACACTAATCCCCATTCTTTTAAGGATTATGCACCATAAAC
131 TTAACTAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTAAGGATTACGCACCATAAAC
* *
2146279 ATAGTCTTCTCATTAGGATTGACAAAATTGATGCTTTGCTTTC
196 ATAGTCTTCTCATTAGGATTGACGAAATTGATGCTTTGGTTTC
2146322 TAGTAATGAT
Statistics
Matches: 611, Mismatches: 87, Indels: 25
0.85 0.12 0.03
Matches are distributed among these distances:
472 11 0.02
473 89 0.15
474 315 0.52
475 189 0.31
476 7 0.01
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.35
Consensus pattern (476 bp):
AGTCTCCATTCTTTTCAGGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACACGACATTG
ATGCTTTGGGGTCGCAAGAAAAGCTTTTCTTGCAACCGTTTTTGATAGAATCAAAGATTTGTCTC
TTAACTAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTAAGGATTACGCACCATAAAC
ATAGTCTTCTCATTAGGATTGACGAAATTGATGCTTTGGTTTCACAAGAAAGACTCTCTTCCCAC
CAATTTTCGCAAAGTCTATGTTCGTGCCTCAAATGAGACAAACATAGATTATAGTAACAATCTTC
ATTCATTTGTGAGTAGGCACTATAAACACATTCTCTTCAATAGGATAAATGATATTGATGGCTTT
CTTTTGCTTGAAAATCATTTCTTTAACCAATTTTCCTCAAAATCAAAGTTCATCCCTTAAATAAG
GCAAGCATTGATTCGTGTAAC
Found at i:2149021 original size:18 final size:18
Alignment explanation
Indices: 2149000--2149070 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
2148990 TGATAGGAGG
2149000 AGAGACAGGAGAGATAGT
1 AGAGACAGGAGAGATAGT
* *
2149018 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGA--GA-GAT---AGT
*
2149042 AGAGACAGGAGAGATAAT
1 AGAGACAGGAGAGATAGT
*
2149060 AGAGAGAGGAG
1 AGAGACAGGAG
2149071 GGATGACAGG
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 20 0.49
20 2 0.05
21 6 0.15
22 2 0.05
24 11 0.27
ACGTcount: A:0.44, C:0.03, G:0.44, T:0.10
Consensus pattern (18 bp):
AGAGACAGGAGAGATAGT
Found at i:2149031 original size:42 final size:42
Alignment explanation
Indices: 2148967--2149085 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
2148957 TAGCCCTCAA
* * *
2148967 AGAGAAAGAAGAGAGAGAAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
2149009 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
2149051 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
2149086 GAGAGAAGAA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.44, C:0.03, G:0.45, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:2158350 original size:475 final size:474
Alignment explanation
Indices: 2157336--2161209 Score: 4624
Period size: 475 Copynumber: 8.2 Consensus size: 474
2157326 ATGCTTTGCT
* ** * * *
2157336 TTCTAGTAATGATCTTCATTC-TTTTGTGATTAGAAACTATAAACACATTCTCTTCATTAGAATA
1 TTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATA
* * * * * * **
2157400 AATGATATTGATGGTTTCCATTTGCGTGAAAATCGTTCCTTTGCCTTATTTTCCTTAAAATTGAA
66 AATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAA
* ** *
2157465 GTTCATCCCATAAATAAGGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCTAGATTGGGA
131 GTTCATCCCTTAAATAAGGCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGA
* * * * *** * ** *
2157530 ACCAAAAACACATTACCTTTATTAGGATACATAACATTAATAATTTGGGGTCGCAAGAACTGCTT
196 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGACGCTTTGGTGTCG-AAGAAAAGGTT
* * * *
2157595 TTCTTGCAGCCGTTTTTGATAGATTC-AAGTTTGTCAT-TTAAATAAGAC-AA-AT--ATACT-T
260 TCCTTCCA-CCGTTTTTGATAGAATCAAAGTTTGTC-TCTTAAATAAGACAAACATGAATAGTCT
* * *** * * * * *
2157653 ATACTAATCCCCATTCTATTAAGGATTACACACCATAAACTTAGTCTTCTCATAAGGATACATGA
323 -TACTAATCCCCATTCTTTTCAGGATTTGGCACTATAAACATAGTCTTCTCATTAGGATAGACGA
* * * *
2157718 TATTGATGCATTAGTTTCGCAAGAAAGGCTTTCCTCCCACCAATTTTTGTAAAGTCTAAGTTCAT
387 AATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCAT
** *
2157783 GTTTCAAATGAGACAAACATGGA
452 GCCTCAAGTGAGACAAACATGGA
* * * **
2157806 TTCTAGTAATGATCTTCATTCATTTTGTGATTGGGCACTATAAACACATTCTCCTTGTTAGGATA
1 TTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATA
* *
2157871 AATGATATTGATGGTTTTCTTTTGCATTAAAATCTTTTCTTTGCCCTAATTTCCTTAAAATCAAA
66 AATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAA
* * *
2157936 GTTCATCCCTTAAATAAGGCAAGCACTGATTCTTGCAACAGTCTCCATTCTTTTCAAGATTGAGA
131 GTTCATCCCTTAAATAAGGCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGA
* * * *
2158001 ACCAAAATCACATTCCCTTAATTAGGATACTTGACATTGACGCTTTGATGTCGTAA-AGAAAGGT
196 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGACGCTTTGGTGTCG-AAGA-AAAGGT
* *
2158065 TTCCTCCCACCGTTTTTGATAGAATCAAAATTTGTCTCTTAAATAAGACAAACATGAATAGTCTT
259 TTCCTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCTT
* * * *
2158130 ACTAATCCCCATTCTTTTTAGTATTTGGCACTATAAACATAGCCTTCTCCTTAGGATAGACGAAA
324 ACTAATCCCCATTCTTTTCAGGATTTGGCACTATAAACATAGTCTTCTCATTAGGATAGACGAAA
* * * * * * *
2158195 TTTATGGTTTCGTTTTGCAAGAAAGGCTTTTTTCCCACCGATTTTTGTAAAGTCTAAGTTCGTGC
389 TTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGC
* *
2158260 CTCAACTAAGA-AGAACATGGA
454 CTCAAGTGAGACA-AACATGGA
* * * *
2158281 TTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCGCTATAAACACATTCTCCTCAATATGATA
1 TTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATA
* * * *
2158346 AATGATATTGATGGTTTTCTTTTGCTTGAAAATCGTTT-TTT-CCCAATTTTCCTCAAAATCAAA
66 AATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAA
* * * *
2158409 GTTCATCACTTAAATAAGGCAAGCATTGATTCTTGTAACAGTCTCCATTCCTTTCAGGATTCGGA
131 GTTCATCCCTTAAATAAGGCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGA
** * * * * * *
2158474 ATGAAAAACATATTCTCTTCATTAGGATAGATGACATTGACGCTTTGGGGTCACAAGAAAAGCTT
196 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGACGCTTTGGTGTC-GAAGAAAAGGTT
* * * * * * **
2158539 TTCTTGCAACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAACTTAGACAAACATGAATACTCAC
260 TCCTT-CCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCTT
* * * * *
2158604 ACTAATCCCCATTCTTTTCTA-GATTTGGCACCATACACATAGTCTTCTCTTTAGGACAGACAAA
324 ACTAATCCCCATTCTTTTC-AGGATTTGGCACTATAAACATAGTCTTCTCATTAGGATAGACGAA
* * *
2158668 AGTGGTGCTTTGGTTTCGCAAGAAAGGCTTTCATCCCACCAATTTTTGTAAAGTCTAAGTTCATG
388 ATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATG
*
2158733 CCTCAAATGAGACAAACATGGA
453 CCTCAAGTGAGACAAACATGGA
* * *
2158755 TTCTAGAAATATTCTTCATTCATTTTGTGATTAGGCGCTAAAAACACATTCTCCTCAATTAGGAT
1 TTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTC-ATTAGGAT
* *
2158820 AAATGATATTGAAGGTTTTCTTTTGC-TTATAAA---------------ATTTTCCTTAAAATCA
65 AAATGATATTGATGGTTTTCTTTTGCATGA-AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
* *
2158869 AAGTTCATCCCTGAAATATGGCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGG
129 AAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGG
* * * * * * * *
2158934 GAACCAAACACACATTCCCTTCATTAGGATACCTGAAAGTAATGCTTTGATGTTGTAAGAAAAGG
194 GAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGACGCTTTGGTGTCG-AAGAAAAGG
* ** * * *
2158999 TTTTCTTTCCATTGTTTTTGATAGATTCAAAGTTTGTCTATTAAATAAGACAAACATGATTAGTC
258 -TTTCCTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTC
* * *
2159064 TTACTAATCCCCATTCTTTTTAGGATTTGGCACCATAAACATAGTCTTCTCATTAGGATAGATGA
322 TTACTAATCCCCATTCTTTTCAGGATTTGGCACTATAAACATAGTCTTCTCATTAGGATAGACGA
* * ** * *
2159129 AATTGATGCATTGGTTTCGCAAGATA----TGATTCCCACCAATTTTTGTATAGTCTAAGTCCAT
387 AATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCAT
* *
2159190 GCCTCAAGTGAGATAAACAGGGA
452 GCCTCAAGTGAGACAAACATGGA
*
2159213 TTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACA-T-T-CTCATTAAGATA
1 TTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATA
* * * * *
2159275 AATGATATTGACGATTTTCCTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAA
66 AATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAA
* *
2159340 CTTCATCCCTTAAATAAGGCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAGGATTGGGA
131 GTTCATCCCTTAAATAAGGCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGA
** * * *
2159405 ATGAAAAACACATTCCCTTTATTAGGATACATGACATTGGCACTTTGGTGTTGCG-AGAAAAGGT
196 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGACGCTTTGGTG-T-CGAAGAAAAGGT
* * * *
2159469 TTCCTTCCCACCATTTTGGATAGAATCAAAGTTT-TCTTTTAAATAAGGCAAACATGAATAGTCT
259 TTCCTT-CCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCT
* ** * * *
2159533 TGCTAATCGCTAATTCTTTTCAAGATTTGGCACTATAAACATAGTCTTCTTATTAGGATAGACAA
323 TACTAATC-CCCATTCTTTTCAGGATTTGGCACTATAAACATAGTCTTCTCATTAGGATAGACGA
* * ***
2159598 AATTGATGCTTTGGTTTCGCAAGAAAGG----CTTCCCACCGATTTTTGTATAGTCTAAGTTTGG
387 AATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCAT
*
2159659 GCCCCAAGTGAGACAAACATGGA
452 GCCTCAAGTGAGACAAACATGGA
* * * *
2159682 TTCTAGTAATAATCTTCATTCAATTTGTGATTAGGCACTGAAAACACATTCCCCTAATTAGGATA
1 TTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATA
* * *
2159747 AATGAAATTGATAGTTTAT-TTTTGCATGAAAATTTTTTCTTTGCCCTATTTTCCTTAAAATCAA
66 AATGATATTGATGGTTT-TCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
* * * * *
2159811 AGTTCATCCCTTAAAAAAGGCAAGCATT-ATTTCTTGCAACAGTCCCCATTCTCTTCAGGATTGG
130 AGTTCATCCCTTAAATAAGGCAAGCATTGA-TTCTTGTAACAGTCTCCATTCTTTTCAAGATTGG
* * * * * * *
2159875 GAACTAAAAACACTTTCCCTTCGTTAGGATACAAGATATTGATGCTTTGGTGTAGCAAGAAAAGT
194 GAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGACGCTTTGGTGTCG-AAGAAAAG-
* * * * * *
2159940 TTTTCTTTCCACTGTTATTGATAGAATCAAAGTATGTCTCTTAAATAAGAAAAACATG-ATAAGT
257 GTTTCCTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT-AGT
** * *
2160004 CTTACTAAAGCCCATTCTTTTCAGGATTTGGCACTATAAACATAGTCTTCTCATTAGGATTGACC
321 CTTACTAATCCCCATTCTTTTCAGGATTTGGCACTATAAACATAGTCTTCTCATTAGGATAGACG
* * * * * * *
2160069 AAATTGATGCTTTGGTTTTGCAAGAAAGACTTTTTTCCCACTAATCTTTGTAAAGTCTATGCTCA
386 AAATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCA
*
2160134 TGCCTCAAGTGACACAAACATGGA
451 TGCCTCAAGTGAGACAAACATGGA
* ** *
2160158 TTCTAGCAATAATCTTCCCTCATTTTGTGATTAGGCACTAAAAACACATTATCCTCATTAGGATA
1 TTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATA
* * * * *
2160223 AAAGGTATTGATGGTTTT-TTTTTCATGAAAATCTTTTCTTTGCCCTAGTTTCCCTAAAATCAAA
66 AATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAA
* * * * *
2160287 GCTCATCCCTTAAATAAGACAAGCTTTGATTCTTGTAGCAGTCCCCATTCTTTTCAAGATTGGGA
131 GTTCATCCCTTAAATAAGGCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGA
* * * ** *
2160352 ACCAAAAACAGATTCCTTTCGTTAGGATACCCGACATTAACGCTTTGGTGTCGTAAGAAAAGGTT
196 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGACGCTTTGGTGTCG-AAGAAAAGG-T
* * * *
2160417 TTCTTTCCTCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGCCTT
259 TTCCTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCTT
* * *
2160482 ACTAATCCCCATTCTTTACGGGATTTGGCACTATAAACATAGTCTTCTCAATAGGATAGACGAAA
324 ACTAATCCCCATTCTTTTCAGGATTTGGCACTATAAACATAGTCTTCTCATTAGGATAGACGAAA
* * * * * *
2160547 TTGATGCTCTGGTTTTGCAGGAAAGTCTTTCTTCCAACCAATTTTTGTAAAGTCCAAG-TCTATG
389 TTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTC-ATG
2160611 CCTCAAGTGAGACAAACATGGA
453 CCTCAAGTGAGACAAACATGGA
* *
2160633 TTCTAGTAATAATCTTCTTTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCGTTAGGATA
1 TTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATA
* * *
2160698 AATGATAATGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTACCCTATTTTCCTTAATATCAAA
66 AATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAA
* * * * *
2160763 GCTCATCCCTTAAATAAGGTAAGCTTTGATTCTTGTAACAGTCCCCACTCTTTTCAAGATTGGGA
131 GTTCATCCCTTAAATAAGGCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGA
* *** * *
2160828 ACCAAAAACACATTCCTTTCATTAGGATACCCAACATTTACGCTTTGGTGTCATAAGAAAAGGTT
196 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGACGCTTTGGTGTC-GAAGAAAAGGTT
* * * * *
2160893 TTCTCTCCTCTGTTTTTGATAGAATCAAAGTTTGTCTTTTAAATAAGACAAACATGATTAGTCTT
260 TCCT-TCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCTT
* * * * * * *
2160958 ACTATTCCACATTCTTTACAGGATTT-GCAGTATAAACATAGTCTTCTCAATAGGATAAACAAAA
324 ACTAATCCCCATTCTTTTCAGGATTTGGCACTATAAACATAGTCTTCTCATTAGGATAGACGAAA
* * *
2161022 TTGATGCTTTGGTTTTGCAAGAAAGTCTTTTTTCCCACCAATTTTTGTAAAGTCTAAG-TCAATG
389 TTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTC-ATG
2161086 CCTCAAGTGAGACAAACATGGA
453 CCTCAAGTGAGACAAACATGGA
* *
2161108 TTCGAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACGCATTCTCCTCATTAGGATA
1 TTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATA
2161173 AATGATATTGATGGTTTTCTTTTGCATGAAAATCTTT
66 AATGATATTGATGGTTTTCTTTTGCATGAAAATCTTT
2161210 GCTTCCATTA
Statistics
Matches: 2924, Mismatches: 417, Indels: 121
0.84 0.12 0.03
Matches are distributed among these distances:
454 33 0.01
455 4 0.00
456 1 0.00
457 1 0.00
458 95 0.03
461 1 0.00
462 246 0.08
463 5 0.00
468 40 0.01
469 312 0.11
470 42 0.01
471 224 0.08
472 272 0.09
473 168 0.06
474 240 0.08
475 884 0.30
476 356 0.12
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (474 bp):
TTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATA
AATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAA
GTTCATCCCTTAAATAAGGCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGA
ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGACGCTTTGGTGTCGAAGAAAAGGTTT
CCTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCTTAC
TAATCCCCATTCTTTTCAGGATTTGGCACTATAAACATAGTCTTCTCATTAGGATAGACGAAATT
GATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCT
CAAGTGAGACAAACATGGA
Found at i:2162038 original size:50 final size:50
Alignment explanation
Indices: 2161963--2162062 Score: 182
Period size: 50 Copynumber: 2.0 Consensus size: 50
2161953 TTGTCGAACT
*
2161963 GCCAAGGTCTTCCCAAGAAGTTGTGGCTTGCTTCCATAGGCACTACATCA
1 GCCAAGGTCTTCCCAAGAAGATGTGGCTTGCTTCCATAGGCACTACATCA
*
2162013 GCCAAGGTCTTCCCAAGAGGATGTGGCTTGCTTCCATAGGCACTACATCA
1 GCCAAGGTCTTCCCAAGAAGATGTGGCTTGCTTCCATAGGCACTACATCA
2162063 CACAAGACTT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (50 bp):
GCCAAGGTCTTCCCAAGAAGATGTGGCTTGCTTCCATAGGCACTACATCA
Found at i:2163317 original size:33 final size:33
Alignment explanation
Indices: 2163272--2163354 Score: 121
Period size: 33 Copynumber: 2.5 Consensus size: 33
2163262 CTCTCTTTAT
* *
2163272 TATCTCTCCTATCTCTTCTCCTATCATCCCTTC
1 TATCTCTACTATCTCTTCTCCTATCATCCCTCC
*
2163305 TATCTCTACTATCTCTCCTCCTATCATCCCTCC
1 TATCTCTACTATCTCTTCTCCTATCATCCCTCC
* *
2163338 TATCTCTTCTTTCTCTT
1 TATCTCTACTATCTCTT
2163355 TGAGGGCTAC
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 44 1.00
ACGTcount: A:0.12, C:0.41, G:0.00, T:0.47
Consensus pattern (33 bp):
TATCTCTACTATCTCTTCTCCTATCATCCCTCC
Found at i:2164133 original size:21 final size:19
Alignment explanation
Indices: 2164094--2164135 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 19
2164084 GCTAGTTTTT
2164094 TTTCCTTTTTTTTGTATTC
1 TTTCCTTTTTTTTGTATTC
*
2164113 TTTCTTTTTTCTTTGGTATTC
1 TTTCCTTTTT-TTT-GTATTC
2164134 TT
1 TT
2164136 GAAAAAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 9 0.45
20 3 0.15
21 8 0.40
ACGTcount: A:0.05, C:0.14, G:0.07, T:0.74
Consensus pattern (19 bp):
TTTCCTTTTTTTTGTATTC
Found at i:2166268 original size:159 final size:157
Alignment explanation
Indices: 2165143--2170534 Score: 1222
Period size: 159 Copynumber: 34.0 Consensus size: 157
2165133 AAGAAAAGGT
* ** * *
2165143 TTTCTTTCCTCC-ATTTTTGATAGAATCAAAATTTGCCTCATAATTAAGACAAACATGATTAGTC
1 TTTCTTTCC-CCAATTTTTGATA-AATCAAAGTTTTTCTCTTAAATAAGACAAACATGATTAGTC
** * * * *
2165207 TTACCAAT-CCTATTCTTTTCAGGATTTGGCACTATAAACACAATCTTCTCAATAGGAT-GACGA
64 TTAATAATCCCCATTCTTTTCAGGATTTGGCACTAAAAACACATTCTTCTCATTAGGATAGACGA
*
2165270 AATTGATGCTTTGGTTTTGCAAGAAAGGT-
129 CATTGATGCTTTGGTTTTGCAAGAAA-GTC
* *** * ** *
2165299 TTTC-TTCCCATCAATTTTTG-TAAAGTCTAAGTCTGGGC-CTCAGGTGAGACAAACATGGATT-
1 TTTCTTTCCC--CAATTTTTGATAAA-TCAAAGT-TTTTCTCTTAAATAAGACAAACAT-GATTA
* *** ** * *
2165360 CTAGAAATAATCTTCATTCATTTT--GTGATTTGGCACTAAAAACACATTCTCCTCAATAGGATA
61 GTCTTAATAATCCCCATTC-TTTTCAG-GATTTGGCACTAAAAACACATTCTTCTCATTAGGATA
* ** * * ** * * *
2165423 AATAATATTGATGGTTTTATTTTGTATGAAAATC
124 GACGACATTGATGCTTTGGTTTTGCAAGAAAGTC
* * ** * * *
2165457 TTTTCTTTGCCCTATTTCCCTT-A-AAATCAAAGTTCATCCCGTAAATAA-AGCAAGCACTGA-T
1 -TTTCTTTCCCCAATTT---TTGATAAATCAAAGTTTTTCTCTTAAATAAGA-CAAACA-TGATT
* * * * * ** * * * * *
2165518 --TCTGTAACAGTCTCTATTTTTTTCAATATTGGGAACAAAAAACACATT-TCCTTCATTAGTAT
60 AGTCT-TAATAATCCCCATTCTTTTCAGGATTTGGCACTAAAAACACATTCTTC-TCATTAGGAT
* * ** * * *
2165580 ACATGACATTGACACTTTGGTGTCGCAAGAAAAG-G
123 AGACGACATTGATGCTTTGGTTTTGCAAG-AAAGTC
* ** * *
2165615 TTTCCTTCCCACCGTTTTTGATAGAATCAAAG-TTTTCTTTTAAATAAGACAAACATGAATAGTC
1 TTTCTTTCCC-CAATTTTTGATA-AATCAAAGTTTTTCTCTTAAATAAGACAAACATGATTAGTC
* * * * * * *
2165679 -TAGGTAATCCCAAATTGTTTTCAAGATTTGGCACTATAAACATAGTCTTCTCATTAGGATA-AG
64 TTA-ATAATCCC-CATTCTTTTCAGGATTTGGCACTAAAAACACATTCTTCTCATTAGGATAGA-
* *
2165742 CGAAATTGATGCTTTGGATTTGCAAGAAAGTC
126 CGACATTGATGCTTTGGTTTTGCAAGAAAGTC
* * * * * * * * *
2165774 TTTC-TTCCCATAATTTTT-TTAAAGTCTAAGTCTATGC-CTCAAGTAAGACAAACTTGGATT-C
1 TTTCTTTCCC-CAATTTTTGATAAA-TCAAAGT-TTTTCTCTTAAATAAGACAAACAT-GATTAG
** ** * * * *
2165835 TAGTAATAATCTTCTTTCATTTT--GTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATAA
62 TCTTAATAATCCCCATTC-TTTTCAG-GATTTGGCACTAAAAACACATTCTTCTCATTAGGATAG
* ** * ** * *
2165898 AAGGTATTGATGGTTTTATTTTGCATGAAAATC
125 ACGACATTGATGCTTTGGTTTTGCAAGAAAGTC
* * * * * * * *
2165931 TTTTCTTT-GCCACATTTTCCTTA-AAATCAAAGCTTATCCCTTAAATAAGGCAAGCTTTGATT-
1 -TTTCTTTCCCCA-ATTTT--TGATAAATCAAAGTTTTTCTCTTAAATAAGACAAAC-ATGATTA
* * * * * * * * * * * *
2165993 -CCTGTAACAGTCCCCGTTCTTTTCAAGAGTGGGAACCAAAAGCACATTC-CCTTCATTAGAATA
61 GTCT-TAATAATCCCCATTCTTTTCAGGATTTGGCACTAAAAACACATTCTTC-TCATTAGGATA
** * ** *
2166056 CCCGACATTGACGCTTTGG-AGTCCAAAGAAAAGGT-
124 GACGACATTGATGCTTTGGTTTTGC-AAG-AAA-GTC
* *
2166091 TTTCTTTCCTTCGA-TTTTGATAGAATCAAAGTTTTTCTCTTAAATAAGACAAACATGATTAGTC
1 TTTCTTTCC-CCAATTTTTGATA-AATCAAAGTTTTTCTCTTAAATAAGACAAACATGATTAGTC
** * * * *
2166155 TTACCAATCCCCATTCTTTTCAGGATTTGGCACTATAAACATAGTCTTCTCAATAGGATAGACGA
64 TTAATAATCCCCATTCTTTTCAGGATTTGGCACTAAAAACACATTCTTCTCATTAGGATAGACGA
2166220 -AGTTGATGCTTTGGTTTTGCAAGAAAGTC
129 CA-TTGATGCTTTGGTTTTGCAAGAAAGTC
* * * * * * * * *
2166249 TTTCTTCCCACCAATTTTTG-TAAAGTCTAAGTCTATGC-CTCAAGTGAGACAAACCTAGATT-C
1 TTTCTTTCC-CCAATTTTTGATAAA-TCAAAGT-TTTTCTCTTAAATAAGACAAACAT-GATTAG
** * ** * * *
2166311 TGGTAAGAATCTTCATTCATTTT--GTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATAA
62 TCTTAATAATCCCCATTC-TTTTCAG-GATTTGGCACTAAAAACACATTCTTCTCATTAGGATAG
* * * ** * *
2166374 ATGATATTGATGGTTTTCTTTTGCATGAAAATC
125 ACGACATTGATGCTTTGGTTTTGCAAGAAAGTC
* * ** * ** * * * * * * *
2166407 TTTTCTTTGCCCTATTTTTCTTAAAATCAAAGCTCATCCCTTAAATAAGGCAAGCTCTAACTAAT
1 -TTTCTTTCCCCAATTTTTGAT-AAATCAAAGTTTTTCTCTTAAATAAGACAAAC-ATGA-TTAG
* * * * * * * * *
2166472 TCTTGTAACAGTTCCCATTCTTTTCAAGATTGGGAACCAAAAATACATTCCTT-TCATTCGGATA
62 TC-T-TAATAATCCCCATTCTTTTCAGGATTTGGCACTAAAAACACATT-CTTCTCATTAGGATA
** ** *
2166536 CTCGACATTGACACTTTGG-TGT-CATAGGAAAAGGT-
124 GACGACATTGATGCTTTGGTTTTGCA-A-G-AAA-GTC
* * * * *
2166571 TTTCTTT--TCGA-TTTTGGTAGAATTAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCT
1 TTTCTTTCCCCAATTTTTGATA-AATCAAAGTTTTTCTCTTAAATAAGACAAACATGATTAGTCT
** * * * * * * *
2166633 TACCAATCCCTATTCTTTTCATGATTTGGCACTATAAACATAGTCTTCTCAATAGGATAGACGAA
65 TAATAATCCCCATTCTTTTCAGGATTTGGCACTAAAAACACATTCTTCTCATTAGGATAGACGAC
*
2166698 ATTGAGGCTTTGGTTTTGCAAGAAAGGT-
130 ATTGATGCTTTGGTTTTGCAAGAAA-GTC
* * * * ** * * *
2166726 TTTCTTCCCTCCAA-TTTTGGTAAAGTCAAAGTCTATGC-CTCGAGTGAGACAAACATGGATT-C
1 TTTCTTTCC-CCAATTTTTGATAAA-TCAAAGT-TTTTCTCTTAAATAAGACAAACAT-GATTAG
** ** ** * *
2166788 TAGTAATAATCTTCATTCATTTT--GTGATTCAGCACTAAAAACACATTCTCCTCATTAGGATAA
62 TCTTAATAATCCCCATTC-TTTTCAG-GATTTGGCACTAAAAACACATTCTTCTCATTAGGATAG
** * * ** * *
2166851 ATAATATTGATGGTTTTCTTTTGCATGAAAATC
125 ACGACATTGATGCTTTGGTTTTGCAAGAAAGTC
* * * ** * * * *
2166884 TTTTCTTTGCCCTATTTTCCTTA-AAATCAAAGTTCATCCCTTAAAAAAGGCAAGCATTGA-TA-
1 -TTTCTTTCCCCAATTTT--TGATAAATCAAAGTTTTTCTCTTAAATAAGACAAACA-TGATTAG
* * * * * *
2166946 -CTTGCAA-CAGCCGCCATTCTTTTCAGGATTAGGAACCAAAAACACATTC-CCTTCATTAGGAT
62 TCTT--AATAATCC-CCATTCTTTTCAGGATTTGGCACTAAAAACACATTCTTC-TCATTAGGAT
* * * * * *
2167008 ACAAGACATTGATGCTTTGGTGTAGTAAGAAAAGTT
123 AGACGACATTGATGCTTTGGTTTTGCAAG-AAAGTC
** * * * * *
2167044 TTTCTTTCCCCCGTTCTTGATAGAATCAAAGTATGTCTCTTAAATAAGACAAACAAGATAAGTCT
1 TTTCTTTCCCCAATTTTTGATA-AATCAAAGTTTTTCTCTTAAATAAGACAAACATGATTAGTC-
* * * * * *
2167109 TTCA-AATCCCCATTCTTTTCAGGATTTGGTAC-AATAAACATAGTCTTCTCATTAGGATTGACT
64 TTAATAATCCCCATTCTTTTCAGGATTTGGCACTAA-AAACACATTCTTCTCATTAGGATAGACG
* *
2167172 AAATTGATGCTTTGGTTTTGCAAGAAAGGC
128 ACATTGATGCTTTGGTTTTGCAAGAAAGTC
* **** * * ** **
2167202 TTTC-TTCCTGCCAATCTTTG-TAAAGTCTAAACCCATGC-CTTAAGTGGGACAAACATGGGT--
1 TTTCTTTCC--CCAATTTTTGATAAA-TC-AAAGTTTTTCTCTTAAATAAGACAAACATGATTAG
* ** * * *
2167262 TCTAGGAATAATCTTCACTTATTTT--GTGATTAT-GCACTAAAAACACATTCTCCTTATTAGGA
62 TCT--TAATAATCCCCA-TTCTTTTCAG-GATT-TGGCACTAAAAACACATTCTTCTCATTAGGA
* * ** * ** **
2167324 TAAAAGGTATTGATGGTTTTCTTTTGCCTGAACA-TC
122 TAGACGACATTGATGCTTTGGTTTTGCAAGAA-AGTC
* * ** * ** * * * * *
2167360 TTTTCTTTGCCCTATTTTCCATAAAATCAAAGCTCATCCCTTAAATAAGGCAAGCTTTGATT-CT
1 -TTTCTTTCCCCAATTTTTGAT-AAATCAAAGTTTTTCTCTTAAATAAGACAAAC-ATGATTAGT
* * * * * * *
2167424 -TGTAACAGA-CCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTTCTTCT-GTTAGGATAC
63 CT-TAATA-ATCCCCATTCTTTTCAGGATTTGGCACTAAAAACACA-TTCTTCTCATTAGGATAG
* * * * *
2167486 CCGACATTAAAGCTTTGGTGTCATAGGAA-AAAGT-
125 ACGACATTGATGCTTTGGT-T--TTGCAAGAAAGTC
* * * *
2167520 TTTCTTTCCTCC-ATTTTTGATAGAGTCAAAGTTTGTCTATTAAATAAGACAAACATGATTAGTT
1 TTTCTTTCC-CCAATTTTTGATA-AATCAAAGTTTTTCTCTTAAATAAGACAAACATGATTAGTC
* * * * * * ** *
2167584 TTACTAATCCCCACTCTTTACAGGATTTGGCACTATAAACATAGTCTTCTCAACAGGATTGACGA
64 TTAATAATCCCCATTCTTTTCAGGATTTGGCACTAAAAACACATTCTTCTCATTAGGATAGACGA
* *
2167649 AATTGATGCTTTGGTTTTGCAAGAATGTC
129 CATTGATGCTTTGGTTTTGCAAGAAAGTC
* * * * * * * * *
2167678 TTTCTTCCCACCAATTTTTG-TAAAGTCTAAGTCTATGC-CTCAAGTGAGACAAATATGGATTCC
1 TTTCTTTCC-CCAATTTTTGATAAA-TCAAAGT-TTTTCTCTTAAATAAGACAAACAT-GATT-A
* *** * *
2167741 GGC--AATAATCTTTATTCATTTT--GTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATA
61 GTCTTAATAATCCCCATTC-TTTTCAG-GATTTGGCACTAAAAACACATTCTTCTCATTAGGATA
* * * * ** * *
2167802 -AGTGATATTGTTGGTTTTCTTTTGCATGAAAATC
124 GA-CGACATTGATGCTTTGGTTTTGCAAGAAAGTC
* * * ** * * * *
2167836 TTTTCTTTACCGC-ATTTTCCTTA-AAATCAAAGCTCATCCCTTAAATAAGGCAAGCTTTGATTC
1 -TTTCTTT-CCCCAATTTT--TGATAAATCAAAGTTTTTCTCTTAAATAAGACAAAC-ATGATT-
* * * * * * * * **
2167899 A-T-GTAATAGTCCCTATTCTTTTCAAGATTGGGAACCAAAAACATATTCCTT-TCGCTAGGATA
60 AGTCTTAATAATCCCCATTCTTTTCAGGATTTGGCACTAAAAACACATT-CTTCTCATTAGGATA
* * * *
2167961 -CCTGACATTAACGCTTTGG-TGT-CATAGGAAAAGGT-
124 GAC-GACATTGATGCTTTGGTTTTGCA-A-G-AAA-GTC
* ** * *
2167996 TTTCTTTCCTCTGTTTTTGATAAAATCAAAGTATGTCTCTTAAATAAGACAAACATGATTAGTCT
1 TTTCTTTCCCCAATTTTTGAT-AAATCAAAGTTTTTCTCTTAAATAAGACAAACATGATTAGTCT
* * * * * * *
2168061 TACTAATCCTCATTCTTTTCAGGATTTGGCACTACAAACATAGTCTTCTCAATAGGATAGACGAA
65 TAATAATCCCCATTCTTTTCAGGATTTGGCACTAAAAACACATTCTTCTCATTAGGATAGACGAC
2168126 ATTGATGCTTTGGTTTTGCAAGAAAGTC
130 ATTGATGCTTTGGTTTTGCAAGAAAGTC
* * * * * *
2168154 TTTCTTCCCACCAATTTTTTG-TAAAGTCTAAGTCTATGC-CTCAAGA-GAGACAAACATGGATT
1 TTTCTTTCC-CCAA-TTTTTGATAAA-TCAAAGT-TTTTCTCTTAA-ATAAGACAAACAT-GATT
* * ** ** * *
2168216 -CTATTAATAATCTTCATTCATTTT--GTGATTAAGCACTAAAAACACAATCTCCTCATTAGGAT
60 AGTCTTAATAATCCCCATTC-TTTTCAG-GATTTGGCACTAAAAACACATTCTTCTCATTAGGAT
* * * * ** * *
2168278 AAAAGATATTGATGGTTTTCTTTTGCATGAAAATC
123 AGACGACATTGATGCTTTGGTTTTGCAAGAAAGTC
* * * * ** * * ** * *
2168313 TTTTCTTTGCCCTATTTTCCTTA-AAATCAAAGCTCATCCCTTAAATAAGGCAGGCTTTGATT-C
1 -TTTCTTTCCCCAATTTT--TGATAAATCAAAGTTTTTCTCTTAAATAAGACAAAC-ATGATTAG
* * * * * * * **
2168376 T-TGTAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAAACACATTCCTT-TCGTTAAAATA
62 TCT-TAATAATCCCCATTCTTTTCAGGATTTGGCA-CTAAAAACACATT-CTTCTCATTAGGATA
** * * * * ***
2168439 CCCGACATTAACGATTTGGTGTCAAAAGAAAAGGT-
124 GACGACATTGATGCTTTGGTTTTGCAAG-AAA-GTC
* * *
2168474 TTTCATTCCTCC-ATTTTTGATAGAATCAATGTTTGTCTCTTAAATAAGACAAACATGATTAGTC
1 TTTCTTTCC-CCAATTTTTGATA-AATCAAAGTTTTTCTCTTAAATAAGACAAACATGATTAGTC
*** * * * * * * * *
2168538 TTTCCAATCCCTATTCTTTTCAGGTTTTGGCACTATAAACACAATCTTCTTAATAAGAT-GACAA
64 TTAATAATCCCCATTCTTTTCAGGATTTGGCACTAAAAACACATTCTTCTCATTAGGATAGACGA
* *
2168602 AATTGATGCTTTGGTTTTGGAAGAAAGGT-
129 CATTGATGCTTTGGTTTTGCAAGAAA-GTC
* * *** * ** *
2168631 TTTC-TTCCCATCAA-TTTTCATAAAGTCTAAGTCTGGGC-CTCAGGTGAGACAAACATGGATT-
1 TTTCTTTCCC--CAATTTTTGATAAA-TCAAAGT-TTTTCTCTTAAATAAGACAAACAT-GATTA
* *** ** * *
2168692 TTAGAAATAATCTTCATTCATTTT--GTGATTCGGCACTAAAAACACATTCTCCTCATTAGGATA
61 GTCTTAATAATCCCCATTC-TTTTCAG-GATTTGGCACTAAAAACACATTCTTCTCATTAGGATA
* * ** * ** * ** *
2168755 AAAGGTATTGATGGTTTTCTTTTACGTGAAAATC
124 GACGACATTGATGCTTTGGTTTTGCAAGAAAGTC
* * * * ** * * * * *
2168789 TTTCCTTTGCCCTATTTTCCTTA-AAATCAAAGCTCATCCCTTAAATAAGGCAAGCTTTGATT-C
1 TTT-CTTTCCCCAATTTT--TGATAAATCAAAGTTTTTCTCTTAAATAAGACAAAC-ATGATTAG
* * * * * * *
2168852 T-TGTAACAGA-CCCCGTTCTTCTCAAGATTGGGAACCAAAAACACAATTC-T-TCAGTTAGGAT
62 TCT-TAATA-ATCCCCATTCTTTTCAGGATTTGGCACTAAAAACAC-ATTCTTCTCA-TTAGGAT
** * *
2168913 ACCCGACATTAATGCTTTGG-TGT-CATAGGAAAAGGT-
123 AGACGACATTGATGCTTTGGTTTTGCA-A-G-AAA-GTC
* * * *
2168949 TTTCTTTCCTCC-GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGTCAAACATGATTAGTT
1 TTTCTTTCC-CCAATTTTTGATA-AATCAAAGTTTTTCTCTTAAATAAGACAAACATGATTAGTC
* * * * ** * * *
2169013 TTACTAATCCCCATTCTTTACAAGATTTGGCACTATAAACGTAGTCTTCTCAATAGGATTGACGA
64 TTAATAATCCCCATTCTTTTCAGGATTTGGCACTAAAAACACATTCTTCTCATTAGGATAGACGA
* * *
2169078 AATTGATGCTTTGGTTTCGCAAGAATGTC
129 CATTGATGCTTTGGTTTTGCAAGAAAGTC
* * * * * * * *
2169107 TTTCTTCCCACCAATTTCTG-TAAAGTCAAAGTCTTTGC-CTCAAGTGAGACAAATATGGATTCC
1 TTTCTTTCC-CCAATTTTTGATAAA-TCAAAGT-TTTTCTCTTAAATAAGACAAACAT-GATT-A
* * ** * * *
2169170 GGC--AATATTCTTCATT-TTGT---GATTAGGCACTAAAAACACATTC-TCATCATTAGGATAA
61 GTCTTAATAATCCCCATTCTTTTCAGGATTTGGCACTAAAAACACATTCTTC-TCATTAGGATAG
* * * * ** * *
2169228 ATGATATTGTTGGTTTTCTTTTGCATGAAAATC
125 ACGACATTGATGCTTTGGTTTTGCAAGAAAGTC
* *** * * ** * * * *
2169261 TTTTCTTTACCGC-ATTTTCCTTAATATCAAGGCTCATCCCTTAAATAAGGCAAGCTTTGATTCA
1 -TTTCTTT-CCCCAATTTTTGATAA-ATCAAAGTTTTTCTCTTAAATAAGACAAAC-ATGATT-A
* * * ** * * * * * *
2169325 -T-GTAATAGTCCCTATTCTTTTCAAAATTGGGAACCAAAAACATATTCCTT-TCACTAGGATAC
61 GTCTTAATAATCCCCATTCTTTTCAGGATTTGGCACTAAAAACACATT-CTTCTCATTAGGATAG
* * *
2169387 CCGACATTAACGCTTTGG---TGCATAGGAAAAGGT-
125 ACGACATTGATGCTTTGGTTTTGCA-A-G-AAA-GTC
* ** * * * *
2169420 TTTCTTTCCTCTGTTTTTGATAGAATCAAAGTATGTCTCTTAAATAAGACAAACATAATTAGCCT
1 TTTCTTTCCCCAATTTTTGATA-AATCAAAGTTTTTCTCTTAAATAAGACAAACATGATTAGTCT
* * * * * * *
2169485 TAATAATCCTCATTCTTTTTAGGATTTGGCACTACAAACATAGTCTTCTCAATAGGATAGACGAA
65 TAATAATCCCCATTCTTTTCAGGATTTGGCACTAAAAACACATTCTTCTCATTAGGATAGACGAC
2169550 ATTGATGCTTTGGTTTTGCAAGAAAGTC
130 ATTGATGCTTTGGTTTTGCAAGAAAGTC
* ** * * * * *
2169578 TTTCTTCCCACCAATTTTTTG-TAAAGTTTAAGTCTATGC-CTCAAGA-GAGATAAACATGGATT
1 TTTCTTTCC-CCAA-TTTTTGATAAA-TCAAAGT-TTTTCTCTTAA-ATAAGACAAACAT-GATT
* ** ** ** * *
2169640 -CTAGTAATAATCTTCATTCATTTT--GTGATTAAGCACTAAAAACACAATCTCCTCATTAGGAT
60 AGTCTTAATAATCCCCATTC-TTTTCAG-GATTTGGCACTAAAAACACATTCTTCTCATTAGGAT
* * * * ** * *
2169702 AAAAGATATTGATGGTTTTCTTTTGCATGAAAATC
123 AGACGACATTGATGCTTTGGTTTTGCAAGAAAGTC
* * * * * *** * * ** *
2169737 TTTTTTTTGCCCTATTTTCCTTA-AAATCAAAGCTCAACTCTTCAATAAGGCAGGCATTGATT-C
1 -TTTCTTTCCCCAATTTT--TGATAAATCAAAGTTTTTCTCTTAAATAAGACAAACA-TGATTAG
* * * * * * * * * *
2169800 T-TGTAACAGTCCCGATTTTTTTCAAGATTGGGAACCAAAAACACATTCCTT-TCGTTAGGATAC
62 TCT-TAATAATCCCCATTCTTTTCAGGATTTGGCACTAAAAACACATT-CTTCTCATTAGGATAG
* * * ***
2169863 CCGACATTGACGCTTTGGTGTCAAAAGAAAAGGT-
125 ACGACATTGATGCTTTGGTTTTGCAAG-AAA-GTC
* *
2169897 TTTCTTTCCTCCGA-TTTTGATAGAATCAAAGTTTTTCTCTTAAATAAGACAAACATTATTAGTC
1 TTTCTTTCC-CCAATTTTTGATA-AATCAAAGTTTTTCTCTTAAATAAGACAAACATGATTAGTC
** * * * *
2169961 TTACCAATCCCCATTCTTTTCAGGATTTGGCACTATAAACATAGTCTTCTCAATAGGATAGACGA
64 TTAATAATCCCCATTCTTTTCAGGATTTGGCACTAAAAACACATTCTTCTCATTAGGATAGACGA
2170026 -AGTTGATGCTTTGGTTTTGCAAGAAAGTC
129 CA-TTGATGCTTTGGTTTTGCAAGAAAGTC
* * * * * * * * *
2170055 TTTCTTCCCACCAATTTTTG-TAAAGTCTAAGTCTATGC-CTCAAGTGAGACAAACTTGGATT-C
1 TTTCTTTCC-CCAATTTTTGATAAA-TCAAAGT-TTTTCTCTTAAATAAGACAAACAT-GATTAG
** * ** * * * *
2170117 TGGTAAGAATCTTCATTCATTTT--GTGATTAGGTACTAAAAACACATTCTCCTCATTAGGATAA
62 TCTTAATAATCCCCATTC-TTTTCAG-GATTTGGCACTAAAAACACATTCTTCTCATTAGGATAG
* * * * ** * *
2170180 ATGATATTTATGGTTTTCTTTTGCATGAAAATC
125 ACGACATTGATGCTTTGGTTTTGCAAGAAAGTC
* * *** * ** * * * *
2170213 TTTTCTTTACCGC-ATTTTCCTTA-AAATTGTAGCTCATCCCTTCAATAAGGCAAGCATTGATTC
1 -TTTCTTT-CCCCAATTTT--TGATAAATCAAAGTTTTTCTCTTAAATAAGACAAACA-TGATT-
* * * * * * * *
2170276 A-T-GTAATAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACATATTCCTT-TCGTTAGGATA
60 AGTCTTAATAATCCCCATTCTTTTCAGGATTTGGCACTAAAAACACATT-CTTCTCATTAGGATA
** * * ***
2170338 CCCGACATTAATGCTTTGGTGTCATAAGAAAAGGT-
124 GACGACATTGATGCTTTGGTTTTGCAAG-AAA-GTC
* * *
2170373 TTTCTTTCCTCC-ATTTTTGATAGAATCAAA-TTATGTCTCTTAAATAAGACAAACATGGTAAGT
1 TTTCTTTCC-CCAATTTTTGATA-AATCAAAGTT-TTTCTCTTAAATAAGACAAACATGATTAGT
* * * * * * *
2170436 CTTTCA-AATCCCCGTTCTTTTCATGATTTGGCACT-ATAACATAGTCTTCTCATTAGGATTGAC
63 C-TTAATAATCCCCATTCTTTTCAGGATTTGGCACTAAAAACACATTCTTCTCATTAGGATAGAC
* * *
2170499 TAAATTGATGCTTTGGTTTTGCAAGAAAGGC
127 GACATTGATGCTTTGGTTTTGCAAGAAAGTC
2170530 TTTCT
1 TTTCT
2170535 CCCCGCCAAT
Statistics
Matches: 3658, Mismatches: 1220, Indels: 715
0.65 0.22 0.13
Matches are distributed among these distances:
153 2 0.00
154 57 0.02
155 64 0.02
156 119 0.03
157 308 0.08
158 1063 0.29
159 1620 0.44
160 314 0.09
161 38 0.01
162 11 0.00
163 56 0.02
164 5 0.00
165 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.36
Consensus pattern (157 bp):
TTTCTTTCCCCAATTTTTGATAAATCAAAGTTTTTCTCTTAAATAAGACAAACATGATTAGTCTT
AATAATCCCCATTCTTTTCAGGATTTGGCACTAAAAACACATTCTTCTCATTAGGATAGACGACA
TTGATGCTTTGGTTTTGCAAGAAAGTC
Found at i:2166412 original size:476 final size:475
Alignment explanation
Indices: 2164968--2170843 Score: 8203
Period size: 476 Copynumber: 12.4 Consensus size: 475
2164958 GTTTTCATCA
* * *
2164968 CTTTTGCTTGAAAATCATTT-TTTCCCCTATTTTCCTTAAAATCAAAGCTCATCCCTTAAATAAG
1 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCCCTTAAATAAG
* *
2165032 GCAGGCTTTGATTCTTGTAACAGTCCCCGTTCTTTTCAAGATTGGGAACCAAAAACACATTCCTT
66 GCAAGCTTTGATTCTTGTAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTT
* * * *
2165097 TCGTTAAGATACCCGACATTAACACTTTGGTGTCAAAAGAAAAGGTTTTCTTTCCTCCATTTTTG
131 TCGTTAGGATACCCGACATTAACGCTTTGGTGTCATAAGAAAAGGTTTTCTTTCCTCGA-TTTTG
* * * * *
2165162 ATAGAATCAAAATTTGCCTCATAATTAAGACAAACATGATTAGTCTTACCAAT-CCTATTCTTTT
195 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACCAATCCCCATTCTTTT
* *
2165226 CAGGATTTGGCACTATAAACACAATCTTCTCAATAGGAT-GACGAAATTGATGCTTTGGTTTTGC
260 CAGGATTTGGCACTATAAACATAGTCTTCTCAATAGGATAGACGAAATTGATGCTTTGGTTTTGC
* ** *
2165290 AAGAAAGGT-TTTCTTCCCATCAATTTTTGTAAAGTCTAAGTCTGGGCCTCAGGTGAGACAAACA
325 AAGAAA-GTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAACA
* * *
2165354 TGGATTCTAGAAATAATCTTCATTCATTTTGTGATTTGGCACTAAAAACACATTCTCCTCAATAG
389 TGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAG
2165419 GATAAATA-ATATTGATGGTTTT
454 GATAAA-AGATATTGATGGTTTT
* * * * * *
2165441 ATTTTGTATGAAAATCTTTTCTTTGCCCTATTTCCCTTAAAATCAAAGTTCATCCCGTAAATAAA
1 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCCCTTAAATAAG
** * * * * *
2165506 GCAAGCACTGATTC-TGTAACAGTCTCTATTTTTTTCAATATTGGGAACAAAAAACACATTTCC-
66 GCAAGCTTTGATTCTTGTAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACACA-TTCCT
* * ** * * ** * * * *
2165569 TTCATTAGTATACATGACATTGACACTTTGGTGTCGCAAGAAAAGGTTTCCTTCCCACCGTTTTT
130 TTCGTTAGGATACCCGACATTAACGCTTTGGTGTCATAAGAAAAGGTTTTCTTTCC-TCGATTTT
* * ** * *
2165634 GATAGAATCAAAGTTT-TCTTTTAAATAAGACAAACATGAATAGTC-TAGGTAATCCCAAATTGT
194 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTA-CCAATCCC-CATTCT
* * *
2165697 TTTCAAGATTTGGCACTATAAACATAGTCTTCTCATTAGGATA-AGCGAAATTGATGCTTTGGAT
257 TTTCAGGATTTGGCACTATAAACATAGTCTTCTCAATAGGATAGA-CGAAATTGATGCTTTGGTT
* * *
2165761 TTGCAAGAAAGTCTTTCTTCCCA-TAATTTTTTTAAAGTCTAAGTCTATGCCTCAAGTAAGACAA
321 TTGCAAGAAAGTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTGAGACAA
* *
2165825 ACTTGGATTCTAGTAATAATCTTCTTTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCAT
386 ACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCAT
*
2165890 TAGGATAAAAGGTATTGATGGTTTT
451 TAGGATAAAAGATATTGATGGTTTT
* *
2165915 ATTTTGCATGAAAATCTTTTCTTTGCCAC-ATTTTCCTTAAAATCAAAGCTTATCCCTTAAATAA
1 CTTTTGCATGAAAATCTTTTCTTTGCC-CTATTTTCCTTAAAATCAAAGCTCATCCCTTAAATAA
* * * * *
2165979 GGCAAGCTTTGATTCCTGTAACAGTCCCCGTTCTTTTCAAGAGTGGGAACCAAAAGCACATTCCC
65 GGCAAGCTTTGATTCTTGTAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCT
* * * *
2166044 TTCATTAGAATACCCGACATTGACGCTTTGGAGTCCA-AAGAAAAGGTTTTCTTTCCTTCGATTT
130 TTCGTTAGGATACCCGACATTAACGCTTTGGTGT-CATAAGAAAAGGTTTTCTTTCC-TCGATTT
*
2166108 TGATAGAATCAAAGTTTTTCTCTTAAATAAGACAAACATGATTAGTCTTACCAATCCCCATTCTT
193 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACCAATCCCCATTCTT
*
2166173 TTCAGGATTTGGCACTATAAACATAGTCTTCTCAATAGGATAGACGAAGTTGATGCTTTGGTTTT
258 TTCAGGATTTGGCACTATAAACATAGTCTTCTCAATAGGATAGACGAAATTGATGCTTTGGTTTT
2166238 GCAAGAAAGTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAAC
323 GCAAGAAAGTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAAC
* * * *
2166303 CTAGATTCTGGTAAGAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTA
388 ATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTA
*
2166368 GGATAAATGATATTGATGGTTTT
453 GGATAAAAGATATTGATGGTTTT
*
2166391 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTTCTTAAAATCAAAGCTCATCCCTTAAATAAG
1 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCCCTTAAATAAG
* * *
2166456 GCAAGCTCTAACTAATTCTTGTAACAGTTCCCATTCTTTTCAAGATTGGGAACCAAAAATACATT
66 GCAAGCT-T---TGATTCTTGTAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATT
* * * * * *
2166521 CCTTTCATTCGGATACTCGACATTGACACTTTGGTGTCATAGGAAAAGGTTTTCTTT--TCGATT
127 CCTTTCGTTAGGATACCCGACATTAACGCTTTGGTGTCATAAGAAAAGGTTTTCTTTCCTCGATT
* * *
2166584 TTGGTAGAATTAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACCAATCCCTATTCT
192 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACCAATCCCCATTCT
* *
2166649 TTTCATGATTTGGCACTATAAACATAGTCTTCTCAATAGGATAGACGAAATTGAGGCTTTGGTTT
257 TTTCAGGATTTGGCACTATAAACATAGTCTTCTCAATAGGATAGACGAAATTGATGCTTTGGTTT
* * * *
2166714 TGCAAGAAAGGT-TTTCTTCCCTCCAATTTTGGTAAAGTCAAAGTCTATGCCTCGAGTGAGACAA
322 TGCAAGAAA-GTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTGAGACAA
2166778 ACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTCA-GCACTAAAAACACATTCTCCTCA
386 ACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATT-AGGCACTAAAAACACATTCTCCTCA
2166842 TTAGGATAAATA-ATATTGATGGTTTT
450 TTAGGATAAA-AGATATTGATGGTTTT
* *
2166868 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAAAAG
1 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCCCTTAAATAAG
* * * * * *
2166933 GCAAGCATTGATACTTGCAACAG-CCGCCATTCTTTTCAGGATTAGGAACCAAAAACACATTCCC
66 GCAAGCTTTGATTCTTGTAACAGTCC-CCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCT
* ** * * * *
2166997 TTCATTAGGATACAAGACATTGATGCTTTGGTGT-AGTAAGAAAAGTTTTTCTTTCCCCCG-TTC
130 TTCGTTAGGATACCCGACATTAACGCTTTGGTGTCA-TAAGAAAAGGTTTTCTTT-CCTCGATT-
* * * * *
2167060 TTGATAGAATCAAAGTATGTCTCTTAAATAAGACAAACAAGATAAGTCTTTCAAATCCCCATTCT
192 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACCAATCCCCATTCT
* * * * *
2167125 TTTCAGGATTTGGTACAATAAACATAGTCTTCTCATTAGGATTGACTAAATTGATGCTTTGGTTT
257 TTTCAGGATTTGGCACTATAAACATAGTCTTCTCAATAGGATAGACGAAATTGATGCTTTGGTTT
* ** * ** * * *
2167190 TGCAAGAAAGGCTTTCTTCCTGCCAATCTTTGTAAAGTCTAAACCCATGCCTTAAGTGGGACAAA
322 TGCAAGAAAGTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAA
* * * *
2167255 CATGGGTTCTAGGAATAATCTTCACTT-ATTTTGTGATTATGCACTAAAAACACATTCTCCTTAT
387 CATGGATTCTAGTAATAATCTTCA-TTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCAT
*
2167319 TAGGATAAAAGGTATTGATGGTTTT
451 TAGGATAAAAGATATTGATGGTTTT
* * *
2167344 CTTTTGCCTGAACATCTTTTCTTTGCCCTATTTTCCATAAAATCAAAGCTCATCCCTTAAATAAG
1 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCCCTTAAATAAG
* *
2167409 GCAAGCTTTGATTCTTGTAACAGACCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTTC-T
66 GCAAGCTTTGATTCTTGTAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTT
* * * *
2167473 TCTGTTAGGATACCCGACATTAAAGCTTTGGTGTCATAGGAAAAAGTTTTCTTTCCTCCATTTTT
131 TC-GTTAGGATACCCGACATTAACGCTTTGGTGTCATAAGAAAAGGTTTTCTTTCCTCGA-TTTT
* * * * *
2167538 GATAGAGTCAAAGTTTGTCTATTAAATAAGACAAACATGATTAGTTTTACTAATCCCCACTCTTT
194 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACCAATCCCCATTCTTT
* * *
2167603 ACAGGATTTGGCACTATAAACATAGTCTTCTCAACAGGATTGACGAAATTGATGCTTTGGTTTTG
259 TCAGGATTTGGCACTATAAACATAGTCTTCTCAATAGGATAGACGAAATTGATGCTTTGGTTTTG
* *
2167668 CAAGAATGTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAATA
324 CAAGAAAGTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAACA
** * *
2167733 TGGATTCCGGCAATAATCTTTATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAG
389 TGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAG
** *
2167798 GATAAGTGATATTGTTGGTTTT
454 GATAAAAGATATTGATGGTTTT
*
2167820 CTTTTGCATGAAAATCTTTTCTTTACCGC-ATTTTCCTTAAAATCAAAGCTCATCCCTTAAATAA
1 CTTTTGCATGAAAATCTTTTCTTTGCC-CTATTTTCCTTAAAATCAAAGCTCATCCCTTAAATAA
* * * *
2167884 GGCAAGCTTTGATTCATGTAATAGTCCCTATTCTTTTCAAGATTGGGAACCAAAAACATATTCCT
65 GGCAAGCTTTGATTCTTGTAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCT
* * * *
2167949 TTCGCTAGGATACCTGACATTAACGCTTTGGTGTCATAGGAAAAGGTTTTCTTTCCTCTGTTTTT
130 TTCGTTAGGATACCCGACATTAACGCTTTGGTGTCATAAGAAAAGGTTTTCTTTCCTC-GATTTT
* * * *
2168014 GATAAAATCAAAGTATGTCTCTTAAATAAGACAAACATGATTAGTCTTACTAATCCTCATTCTTT
194 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACCAATCCCCATTCTTT
*
2168079 TCAGGATTTGGCACTACAAACATAGTCTTCTCAATAGGATAGACGAAATTGATGCTTTGGTTTTG
259 TCAGGATTTGGCACTATAAACATAGTCTTCTCAATAGGATAGACGAAATTGATGCTTTGGTTTTG
*
2168144 CAAGAAAGTCTTTCTTCCCACCAATTTTTTGTAAAGTCTAAGTCTATGCCTCAAGAGAGACAAAC
324 CAAGAAAGTCTTTCTTCCCACCAA-TTTTTGTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAAC
* * *
2168209 ATGGATTCTATTAATAATCTTCATTCATTTTGTGATTAAGCACTAAAAACACAATCTCCTCATTA
388 ATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTA
2168274 GGATAAAAGATATTGATGGTTTT
453 GGATAAAAGATATTGATGGTTTT
2168297 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCCCTTAAATAAG
1 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCCCTTAAATAAG
*
2168362 GCAGGCTTTGATTCTTGTAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAAACACATTCCT
66 GCAAGCTTTGATTCTTGTAACAGTCCCCATTCTTTTCAAGATTGGGAACC-AAAAACACATTCCT
** * * * *
2168427 TTCGTTAAAATACCCGACATTAACGATTTGGTGTCAAAAGAAAAGGTTTTCATTCCTCCATTTTT
130 TTCGTTAGGATACCCGACATTAACGCTTTGGTGTCATAAGAAAAGGTTTTCTTTCCTCGA-TTTT
* * *
2168492 GATAGAATCAATGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTTCCAATCCCTATTCTTT
194 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACCAATCCCCATTCTTT
* * * * * *
2168557 TCAGGTTTTGGCACTATAAACACAATCTTCTTAATAAGAT-GACAAAATTGATGCTTTGGTTTTG
259 TCAGGATTTGGCACTATAAACATAGTCTTCTCAATAGGATAGACGAAATTGATGCTTTGGTTTTG
* * ** ** *
2168621 GAAGAAAGGT-TTTCTTCCCATCAATTTTCATAAAGTCTAAGTCTGGGCCTCAGGTGAGACAAAC
324 CAAGAAA-GTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAAC
* * *
2168685 ATGGATTTTAGAAATAATCTTCATTCATTTTGTGATTCGGCACTAAAAACACATTCTCCTCATTA
388 ATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTA
*
2168750 GGATAAAAGGTATTGATGGTTTT
453 GGATAAAAGATATTGATGGTTTT
* * *
2168773 CTTTTACGTGAAAATCTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCCCTTAAATAAG
1 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCCCTTAAATAAG
* * *
2168838 GCAAGCTTTGATTCTTGTAACAGACCCCGTTCTTCTCAAGATTGGGAACCAAAAACACAATT-C-
66 GCAAGCTTTGATTCTTGTAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACAC-ATTCCT
* * *
2168901 TTCAGTTAGGATACCCGACATTAATGCTTTGGTGTCATAGGAAAAGGTTTTCTTTCCTCCGTTTT
130 TTC-GTTAGGATACCCGACATTAACGCTTTGGTGTCATAAGAAAAGGTTTTCTTTCCT-CGATTT
* * *
2168966 TGATAGAATCAAAGTTTGTCTCTTAAATAAGTCAAACATGATTAGTTTTACTAATCCCCATTCTT
193 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACCAATCCCCATTCTT
* * * * *
2169031 TACAAGATTTGGCACTATAAACGTAGTCTTCTCAATAGGATTGACGAAATTGATGCTTTGGTTTC
258 TTCAGGATTTGGCACTATAAACATAGTCTTCTCAATAGGATAGACGAAATTGATGCTTTGGTTTT
* * * * *
2169096 GCAAGAATGTCTTTCTTCCCACCAATTTCTGTAAAGTCAAAGTCTTTGCCTCAAGTGAGACAAAT
323 GCAAGAAAGTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAAC
** * *
2169161 ATGGATTCCGGCAAT-A--TTC-TTCATTTTGTGATTAGGCACTAAAAACACATTCTCATCATTA
388 ATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTA
* *
2169222 GGATAAATGATATTGTTGGTTTT
453 GGATAAAAGATATTGATGGTTTT
* * *
2169245 CTTTTGCATGAAAATCTTTTCTTTACCGC-ATTTTCCTTAATATCAAGGCTCATCCCTTAAATAA
1 CTTTTGCATGAAAATCTTTTCTTTGCC-CTATTTTCCTTAAAATCAAAGCTCATCCCTTAAATAA
* * * * *
2169309 GGCAAGCTTTGATTCATGTAATAGTCCCTATTCTTTTCAAAATTGGGAACCAAAAACATATTCCT
65 GGCAAGCTTTGATTCTTGTAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCT
** * *
2169374 TTCACTAGGATACCCGACATTAACGCTTTGGTG-CATAGGAAAAGGTTTTCTTTCCTCTGTTTTT
130 TTCGTTAGGATACCCGACATTAACGCTTTGGTGTCATAAGAAAAGGTTTTCTTTCCTC-GATTTT
* * * ** *
2169438 GATAGAATCAAAGTATGTCTCTTAAATAAGACAAACATAATTAGCCTTAATAATCCTCATTCTTT
194 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACCAATCCCCATTCTTT
* *
2169503 TTAGGATTTGGCACTACAAACATAGTCTTCTCAATAGGATAGACGAAATTGATGCTTTGGTTTTG
259 TCAGGATTTGGCACTATAAACATAGTCTTCTCAATAGGATAGACGAAATTGATGCTTTGGTTTTG
* * *
2169568 CAAGAAAGTCTTTCTTCCCACCAATTTTTTGTAAAGTTTAAGTCTATGCCTCAAGAGAGATAAAC
324 CAAGAAAGTCTTTCTTCCCACCAA-TTTTTGTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAAC
* *
2169633 ATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAAGCACTAAAAACACAATCTCCTCATTA
388 ATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTA
2169698 GGATAAAAGATATTGATGGTTTT
453 GGATAAAAGATATTGATGGTTTT
* * * *
2169721 CTTTTGCATGAAAATCTTTTTTTTGCCCTATTTTCCTTAAAATCAAAGCTCAACTCTTCAATAAG
1 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCCCTTAAATAAG
* * * *
2169786 GCAGGCATTGATTCTTGTAACAGTCCCGATTTTTTTCAAGATTGGGAACCAAAAACACATTCCTT
66 GCAAGCTTTGATTCTTGTAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTT
* *
2169851 TCGTTAGGATACCCGACATTGACGCTTTGGTGTCAAAAGAAAAGGTTTTCTTTCCTCCGATTTTG
131 TCGTTAGGATACCCGACATTAACGCTTTGGTGTCATAAGAAAAGGTTTTCTTTCCT-CGATTTTG
* *
2169916 ATAGAATCAAAGTTTTTCTCTTAAATAAGACAAACATTATTAGTCTTACCAATCCCCATTCTTTT
195 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACCAATCCCCATTCTTTT
*
2169981 CAGGATTTGGCACTATAAACATAGTCTTCTCAATAGGATAGACGAAGTTGATGCTTTGGTTTTGC
260 CAGGATTTGGCACTATAAACATAGTCTTCTCAATAGGATAGACGAAATTGATGCTTTGGTTTTGC
*
2170046 AAGAAAGTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAACTT
325 AAGAAAGTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAACAT
* * *
2170111 GGATTCTGGTAAGAATCTTCATTCATTTTGTGATTAGGTACTAAAAACACATTCTCCTCATTAGG
390 GGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGG
* *
2170176 ATAAATGATATTTATGGTTTT
455 ATAAAAGATATTGATGGTTTT
* *** *
2170197 CTTTTGCATGAAAATCTTTTCTTTACCGC-ATTTTCCTTAAAATTGTAGCTCATCCCTTCAATAA
1 CTTTTGCATGAAAATCTTTTCTTTGCC-CTATTTTCCTTAAAATCAAAGCTCATCCCTTAAATAA
* * * *
2170261 GGCAAGCATTGATTCATGTAATAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACATATTCCT
65 GGCAAGCTTTGATTCTTGTAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCT
* *
2170326 TTCGTTAGGATACCCGACATTAATGCTTTGGTGTCATAAGAAAAGGTTTTCTTTCCTCCATTTTT
130 TTCGTTAGGATACCCGACATTAACGCTTTGGTGTCATAAGAAAAGGTTTTCTTTCCTCGA-TTTT
* * * * *
2170391 GATAGAATCAAA-TTATGTCTCTTAAATAAGACAAACATGGTAAGTCTTTCAAATCCCCGTTCTT
194 GATAGAATCAAAGTT-TGTCTCTTAAATAAGACAAACATGATTAGTCTTACCAATCCCCATTCTT
* * * *
2170455 TTCATGATTTGGCACTAT-AACATAGTCTTCTCATTAGGATTGACTAAATTGATGCTTTGGTTTT
258 TTCAGGATTTGGCACTATAAACATAGTCTTCTCAATAGGATAGACGAAATTGATGCTTTGGTTTT
* * * * * * *
2170519 GCAAGAAAGGCTTTCTCCCCGCCAATCTTTGTAAAGTCTAAGCCCATGCCTTAAGTGAGACAAAC
323 GCAAGAAAGTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAAC
* * *
2170584 ATGGATTCTAGTAATAATCTTCCCTT-ATTTTGTGATTATGCACTAAAAACACATCCTCCT-ATT
388 ATGGATTCTAGTAATAATCTT-CATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCA-T
*
2170647 TAGGATAAAAGGTATTGATGGTTTT
451 TAGGATAAAAGATATTGATGGTTTT
*
2170672 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTATCCTTAAAATCAAAGCTCATCCCTTAAATAAG
1 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCCCTTAAATAAG
* * * *
2170737 GTAAGCTTTGATTCTTGTAACAGACCCAATTCTTTTCAAGATTGGGAACCAAAAACACATTTCTT
66 GCAAGCTTTGATTCTTGTAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTT
* * *
2170802 CCGTTAGGATACCTGACATTAACGCTTTGGTGTCATAGGAAA
131 TCGTTAGGATACCCGACATTAACGCTTTGGTGTCATAAGAAA
2170844 TGATGACAAC
Statistics
Matches: 4792, Mismatches: 537, Indels: 146
0.88 0.10 0.03
Matches are distributed among these distances:
470 1 0.00
471 173 0.04
472 269 0.06
473 221 0.05
474 295 0.06
475 728 0.15
476 2058 0.43
477 787 0.16
478 165 0.03
479 2 0.00
480 93 0.02
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.36
Consensus pattern (475 bp):
CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCCCTTAAATAAG
GCAAGCTTTGATTCTTGTAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTT
TCGTTAGGATACCCGACATTAACGCTTTGGTGTCATAAGAAAAGGTTTTCTTTCCTCGATTTTGA
TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACCAATCCCCATTCTTTTC
AGGATTTGGCACTATAAACATAGTCTTCTCAATAGGATAGACGAAATTGATGCTTTGGTTTTGCA
AGAAAGTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAACATG
GATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGA
TAAAAGATATTGATGGTTTT
Found at i:2166938 original size:953 final size:952
Alignment explanation
Indices: 2164968--2170835 Score: 8166
Period size: 953 Copynumber: 6.2 Consensus size: 952
2164958 GTTTTCATCA
* * *
2164968 CTTTTGCTTGAAAATCATTT-TTTCCCCTATTTTCCTTAAAATCAAAGCTCATCCCTTAAATAAG
1 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCCCTTAAATAAG
* *
2165032 GCAGGCTTTGATTCTTGTAACAGTCCCCGTTCTTTTCAAGATTGGGAACCAAAAACACATTCCTT
66 GCAAGCTTTGATTCTTGTAACAGTCCCCGTTCTTTTCAAGATTGGGAACCAAAAACACATTCCCT
* * *
2165097 TCGTTAAGATACCCGACATTAACACTTTGGTGTCAAAAGAAAAGGTTTTCTTTCCTCC-ATTTTT
131 TCGTTAGGATACCCGACATTAACGCTTTGGTGTCCAAAGAAAAGGTTTTCTTTCCTCCGA-TTTT
* * * * *
2165161 GATAGAATCAAAATTTGCCTCATAATTAAGACAAACATGATTAGTCTTACCAAT-CCTATTCTTT
195 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACCAATCCCCATTCTTT
* *
2165225 TCAGGATTTGGCACTATAAACACAATCTTCTCAATAGGAT-GACGAAATTGATGCTTTGGTTTTG
260 TCAGGATTTGGCACTATAAACATAGTCTTCTCAATAGGATAGACGAAATTGATGCTTTGGTTTTG
* ** *
2165289 CAAGAAAGGT-TTTCTTCCCATCAATTTTTGTAAAGTCTAAGTCTGGGCCTCAGGTGAGACAAAC
325 CAAGAAA-GTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAAC
* * * *
2165353 ATGGATTCTAGAAATAATCTTCATTCATTTTGTGATTTGGCACTAAAAACACATTCTCCTCAATA
389 ATGGATTCTGGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTA
* * * *
2165418 GGATAAATAATATTGATGGTTTTATTTTGTATGAAAATCTTTTCTTTGCCCTATTTCCCTTAAAA
454 GGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAA
* * * ** * * * *
2165483 TCAAAGTTCATCCCGTAAATAAAGCAAGCACTGATTC-TGTAACAGTCTCTATTTTTTTCAATAT
519 TCAAAGCTCATCCCTTAAATAAGGCAAGCTTTGATTCTTGTAACAGTCCCCATTCTTTTCAAGAT
* * ** * **
2165547 TGGGAACAAAAAACACATTTCC-TTCATTAGTATACATGACATTGACACTTTGGTGTCGCAAGAA
584 TGGGAACCAAAAACACA-TTCCTTTCATTAGGATACCCGACATTAACACTTTGGTGTCATAAGAA
* * * * * *
2165611 AAGGTTTCCTTCCCACCGTTTTTGATAGAATCAAAGTTT-TCTTTTAAATAAGACAAACATGAAT
648 AAGGTTTTCTT-TCTCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATT
* * * * *
2165675 AGTC-TAGGTAATCCCAAATTGTTTTCAAGATTTGGCACTATAAACATAGTCTTCTCATTAGGAT
712 AGTCTTA-CTAATCCC-TATTCTTTTCAGGATTTGGCACTATAAACATAGTCTTCTCAATAGGAT
* *
2165739 A-AGCGAAATTGATGCTTTGGATTTGCAAGAAA-GTCTTTCTTCCCAT--AATTTTTTTAAAGTC
775 AGA-CGAAATTGATGCTTTGGTTTTGCAAGAAAGGTCTTTCTTCCC-TCCAATTTTTGTAAAGTC
* * *
2165800 TAAGTCTATGCCTCAAGTAAGACAAACTTGGATTCTAGTAATAATCTTCTTTCATTTTGTGATTA
838 TAAGTCTATGCCTCAAGTGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTA
*
2165865 GGCACTAAAAACACATTCTCCTCATTAGGATAAAAGGTATTGATGGTTTT
903 GGCACTAAAAACACATTCTCCTCATTAGGATAAAAGATATTGATGGTTTT
* *
2165915 ATTTTGCATGAAAATCTTTTCTTTGCCAC-ATTTTCCTTAAAATCAAAGCTTATCCCTTAAATAA
1 CTTTTGCATGAAAATCTTTTCTTTGCC-CTATTTTCCTTAAAATCAAAGCTCATCCCTTAAATAA
* * *
2165979 GGCAAGCTTTGATTCCTGTAACAGTCCCCGTTCTTTTCAAGAGTGGGAACCAAAAGCACATTCCC
65 GGCAAGCTTTGATTCTTGTAACAGTCCCCGTTCTTTTCAAGATTGGGAACCAAAAACACATTCCC
* * * * *
2166044 TTCATTAGAATACCCGACATTGACGCTTTGGAGTCCAAAGAAAAGGTTTTCTTTCCTTCGATTTT
130 TTCGTTAGGATACCCGACATTAACGCTTTGGTGTCCAAAGAAAAGGTTTTCTTTCCTCCGATTTT
*
2166109 GATAGAATCAAAGTTTTTCTCTTAAATAAGACAAACATGATTAGTCTTACCAATCCCCATTCTTT
195 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACCAATCCCCATTCTTT
*
2166174 TCAGGATTTGGCACTATAAACATAGTCTTCTCAATAGGATAGACGAAGTTGATGCTTTGGTTTTG
260 TCAGGATTTGGCACTATAAACATAGTCTTCTCAATAGGATAGACGAAATTGATGCTTTGGTTTTG
*
2166239 CAAGAAAGTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAACC
325 CAAGAAAGTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAACA
* *
2166304 TAGATTCTGGTAAGAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAG
390 TGGATTCTGGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAG
*
2166369 GATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTTCTTAAAAT
455 GATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
* *
2166434 CAAAGCTCATCCCTTAAATAAGGCAAGCTCTAACTAATTCTTGTAACAGTTCCCATTCTTTTCAA
520 CAAAGCTCATCCCTTAAATAAGGCAAGCT-T---TGATTCTTGTAACAGTCCCCATTCTTTTCAA
* * * * *
2166499 GATTGGGAACCAAAAATACATTCCTTTCATTCGGATACTCGACATTGACACTTTGGTGTCATAGG
581 GATTGGGAACCAAAAACACATTCCTTTCATTAGGATACCCGACATTAACACTTTGGTGTCATAAG
* * *
2166564 AAAAGGTTTTCTTT-TCGA-TTTTGGTAGAATTAAAGTTTGTCTCTTAAATAAGACAAACATGAT
646 AAAAGGTTTTCTTTCTCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAT
* *
2166627 TAGTCTTACCAATCCCTATTCTTTTCATGATTTGGCACTATAAACATAGTCTTCTCAATAGGATA
711 TAGTCTTACTAATCCCTATTCTTTTCAGGATTTGGCACTATAAACATAGTCTTCTCAATAGGATA
* * *
2166692 GACGAAATTGAGGCTTTGGTTTTGCAAGAAAGGT-TTTCTTCCCTCCAATTTTGGTAAAGTCAAA
776 GACGAAATTGATGCTTTGGTTTTGCAAGAAAGGTCTTTCTTCCCTCCAATTTTTGTAAAGTCTAA
*
2166756 GTCTATGCCTCGAGTGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTCA-G
841 GTCTATGCCTCAAGTGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATT-AGG
2166820 CACTAAAAACACATTCTCCTCATTAGGATAAATA-ATATTGATGGTTTT
905 CACTAAAAACACATTCTCCTCATTAGGATAAA-AGATATTGATGGTTTT
* *
2166868 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAAAAG
1 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCCCTTAAATAAG
* * * * * *
2166933 GCAAGCATTGATACTTGCAACAG-CCGCCATTCTTTTCAGGATTAGGAACCAAAAACACATTCCC
66 GCAAGCTTTGATTCTTGTAACAGTCC-CCGTTCTTTTCAAGATTGGGAACCAAAAACACATTCCC
* ** * * *** * *
2166997 TTCATTAGGATACAAGACATTGATGCTTTGGTGTAGTAAGAAAAGTTTTTCTTTCCCCCG-TTCT
130 TTCGTTAGGATACCCGACATTAACGCTTTGGTGTCCAAAGAAAAGGTTTTCTTTCCTCCGATT-T
* * * * *
2167061 TGATAGAATCAAAGTATGTCTCTTAAATAAGACAAACAAGATAAGTCTTTCAAATCCCCATTCTT
194 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACCAATCCCCATTCTT
* * * * *
2167126 TTCAGGATTTGGTACAATAAACATAGTCTTCTCATTAGGATTGACTAAATTGATGCTTTGGTTTT
259 TTCAGGATTTGGCACTATAAACATAGTCTTCTCAATAGGATAGACGAAATTGATGCTTTGGTTTT
* ** * ** * * *
2167191 GCAAGAAAGGCTTTCTTCCTGCCAATCTTTGTAAAGTCTAAACCCATGCCTTAAGTGGGACAAAC
324 GCAAGAAAGTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAAC
* * *
2167256 ATGGGTTCTAGG-AATAATCTTCACTT-ATTTTGTGATTATGCACTAAAAACACATTCTCCTTAT
389 ATGGATTCT-GGTAATAATCTTCA-TTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCAT
* * * * *
2167319 TAGGATAAAAGGTATTGATGGTTTTCTTTTGCCTGAACATCTTTTCTTTGCCCTATTTTCCATAA
452 TAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAA
*
2167384 AATCAAAGCTCATCCCTTAAATAAGGCAAGCTTTGATTCTTGTAACAGACCCCATTCTTTTCAAG
517 AATCAAAGCTCATCCCTTAAATAAGGCAAGCTTTGATTCTTGTAACAGTCCCCATTCTTTTCAAG
* * *
2167449 ATTGGGAACCAAAAACACATTTC-TTCTGTTAGGATACCCGACATTAA-AGCTTTGGTGTCATAG
582 ATTGGGAACCAAAAACACATTCCTTTC-ATTAGGATACCCGACATTAACA-CTTTGGTGTCATAA
* * *
2167512 GAAAAAGTTTTCTTTCCTCCATTTTTGATAGAGTCAAAGTTTGTCTATTAAATAAGACAAACATG
645 GAAAAGGTTTTCTTT-CTCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG
* * * * *
2167577 ATTAGTTTTACTAATCCCCACTCTTTACAGGATTTGGCACTATAAACATAGTCTTCTCAACAGGA
709 ATTAGTCTTACTAATCCCTATTCTTTTCAGGATTTGGCACTATAAACATAGTCTTCTCAATAGGA
* * *
2167642 TTGACGAAATTGATGCTTTGGTTTTGCAAG-AATGTCTTTCTTCCCACCAATTTTTGTAAAGTCT
774 TAGACGAAATTGATGCTTTGGTTTTGCAAGAAAGGTCTTTCTTCCCTCCAATTTTTGTAAAGTCT
* ** * *
2167706 AAGTCTATGCCTCAAGTGAGACAAATATGGATTCCGGCAATAATCTTTATTCATTTTGTGATTAG
839 AAGTCTATGCCTCAAGTGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAG
** *
2167771 GCACTAAAAACACATTCTCCTCATTAGGATAAGTGATATTGTTGGTTTT
904 GCACTAAAAACACATTCTCCTCATTAGGATAAAAGATATTGATGGTTTT
*
2167820 CTTTTGCATGAAAATCTTTTCTTTACCGC-ATTTTCCTTAAAATCAAAGCTCATCCCTTAAATAA
1 CTTTTGCATGAAAATCTTTTCTTTGCC-CTATTTTCCTTAAAATCAAAGCTCATCCCTTAAATAA
* * ** * *
2167884 GGCAAGCTTTGATTCATGTAATAGTCCCTATTCTTTTCAAGATTGGGAACCAAAAACATATTCCT
65 GGCAAGCTTTGATTCTTGTAACAGTCCCCGTTCTTTTCAAGATTGGGAACCAAAAACACATTCCC
* * * * *
2167949 TTCGCTAGGATACCTGACATTAACGCTTTGGTGT-CATAGGAAAAGGTTTTCTTTCCTCTGTTTT
130 TTCGTTAGGATACCCGACATTAACGCTTTGGTGTCCA-AAGAAAAGGTTTTCTTTCCTCCGATTT
* * * *
2168013 TGATAAAATCAAAGTATGTCTCTTAAATAAGACAAACATGATTAGTCTTACTAATCCTCATTCTT
194 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACCAATCCCCATTCTT
*
2168078 TTCAGGATTTGGCACTACAAACATAGTCTTCTCAATAGGATAGACGAAATTGATGCTTTGGTTTT
259 TTCAGGATTTGGCACTATAAACATAGTCTTCTCAATAGGATAGACGAAATTGATGCTTTGGTTTT
*
2168143 GCAAGAAAGTCTTTCTTCCCACCAATTTTTTGTAAAGTCTAAGTCTATGCCTCAAGAGAGACAAA
324 GCAAGAAAGTCTTTCTTCCCACCAA-TTTTTGTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAA
** * *
2168208 CATGGATTCTATTAATAATCTTCATTCATTTTGTGATTAAGCACTAAAAACACAATCTCCTCATT
388 CATGGATTCTGGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATT
*
2168273 AGGATAAAAGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAA
453 AGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAA
*
2168338 ATCAAAGCTCATCCCTTAAATAAGGCAGGCTTTGATTCTTGTAACAGTCCCCATTCTTTTCAAGA
518 ATCAAAGCTCATCCCTTAAATAAGGCAAGCTTTGATTCTTGTAACAGTCCCCATTCTTTTCAAGA
* ** *
2168403 TTGGGAACCAAAAAACACATTCCTTTCGTTAAAATACCCGACATTAACGA-TTTGGTGTCAAAAG
583 TTGGGAACC-AAAAACACATTCCTTTCATTAGGATACCCGACATTAAC-ACTTTGGTGTCATAAG
* *
2168467 AAAAGGTTTTCATTCCTCCATTTTTGATAGAATCAATGTTTGTCTCTTAAATAAGACAAACATGA
646 AAAAGGTTTTC-TTTCTCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGA
* * * * * * *
2168532 TTAGTCTTTCCAATCCCTATTCTTTTCAGGTTTTGGCACTATAAACACAATCTTCTTAATAAGAT
710 TTAGTCTTACTAATCCCTATTCTTTTCAGGATTTGGCACTATAAACATAGTCTTCTCAATAGGAT
* * **
2168597 -GACAAAATTGATGCTTTGGTTTTGGAAGAAAGGT-TTTCTTCCCAT-CAATTTTCATAAAGTCT
775 AGACGAAATTGATGCTTTGGTTTTGCAAGAAAGGTCTTTCTTCCC-TCCAATTTTTGTAAAGTCT
** * * * *
2168659 AAGTCTGGGCCTCAGGTGAGACAAACATGGATTTTAGAAATAATCTTCATTCATTTTGTGATTCG
839 AAGTCTATGCCTCAAGTGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAG
*
2168724 GCACTAAAAACACATTCTCCTCATTAGGATAAAAGGTATTGATGGTTTT
904 GCACTAAAAACACATTCTCCTCATTAGGATAAAAGATATTGATGGTTTT
* * *
2168773 CTTTTACGTGAAAATCTTTCCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCCCTTAAATAAG
1 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCCCTTAAATAAG
* *
2168838 GCAAGCTTTGATTCTTGTAACAGACCCCGTTCTTCTCAAGATTGGGAACCAAAAACACAATT--C
66 GCAAGCTTTGATTCTTGTAACAGTCCCCGTTCTTTTCAAGATTGGGAACCAAAAACAC-ATTCCC
* * *
2168901 TTCAGTTAGGATACCCGACATTAATGCTTTGGTGT-CATAGGAAAAGGTTTTCTTTCCTCCGTTT
130 TTC-GTTAGGATACCCGACATTAACGCTTTGGTGTCCA-AAGAAAAGGTTTTCTTTCCTCCGATT
* * *
2168965 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGTCAAACATGATTAGTTTTACTAATCCCCATTCT
193 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACCAATCCCCATTCT
* * * *
2169030 TTACAAGATTTGGCACTATAAACGTAGTCTTCTCAATAGGATTGACGAAATTGATGCTTTGGTTT
258 TTTCAGGATTTGGCACTATAAACATAGTCTTCTCAATAGGATAGACGAAATTGATGCTTTGGTTT
* * * * *
2169095 CGCAAGAATGTCTTTCTTCCCACCAATTTCTGTAAAGTCAAAGTCTTTGCCTCAAGTGAGACAAA
323 TGCAAGAAAGTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAA
* * * *
2169160 TATGGATTCCGGCAAT-A--TTC-TTCATTTTGTGATTAGGCACTAAAAACACATTCTCATCATT
388 CATGGATTCTGGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATT
* *
2169221 AGGATAAATGATATTGTTGGTTTTCTTTTGCATGAAAATCTTTTCTTTACCGC-ATTTTCCTTAA
453 AGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCC-CTATTTTCCTTAA
* * * * * *
2169285 TATCAAGGCTCATCCCTTAAATAAGGCAAGCTTTGATTCATGTAATAGTCCCTATTCTTTTCAAA
517 AATCAAAGCTCATCCCTTAAATAAGGCAAGCTTTGATTCTTGTAACAGTCCCCATTCTTTTCAAG
* * * *
2169350 ATTGGGAACCAAAAACATATTCCTTTCACTAGGATACCCGACATTAACGCTTTGGTG-CATAGGA
582 ATTGGGAACCAAAAACACATTCCTTTCATTAGGATACCCGACATTAACACTTTGGTGTCATAAGA
** * *
2169414 AAAGGTTTTCTTTCCTCTGTTTTTGATAGAATCAAAGTATGTCTCTTAAATAAGACAAACATAAT
647 AAAGGTTTTCTTT-CTCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAT
* * * *
2169479 TAGCCTTAATAAT-CCTCATTCTTTTTAGGATTTGGCACTACAAACATAGTCTTCTCAATAGGAT
711 TAGTCTTACTAATCCCT-ATTCTTTTCAGGATTTGGCACTATAAACATAGTCTTCTCAATAGGAT
* *
2169543 AGACGAAATTGATGCTTTGGTTTTGCAAGAAA-GTCTTTCTTCCCACCAATTTTTTGTAAAGTTT
775 AGACGAAATTGATGCTTTGGTTTTGCAAGAAAGGTCTTTCTTCCCTCCAA-TTTTTGTAAAGTCT
* * *
2169607 AAGTCTATGCCTCAAGAGAGATAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAA
839 AAGTCTATGCCTCAAGTGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAG
*
2169672 GCACTAAAAACACAATCTCCTCATTAGGATAAAAGATATTGATGGTTTT
904 GCACTAAAAACACATTCTCCTCATTAGGATAAAAGATATTGATGGTTTT
* * * *
2169721 CTTTTGCATGAAAATCTTTTTTTTGCCCTATTTTCCTTAAAATCAAAGCTCAACTCTTCAATAAG
1 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCCCTTAAATAAG
* * * *
2169786 GCAGGCATTGATTCTTGTAACAGT-CCCGATTTTTTTCAAGATTGGGAACCAAAAACACATTCCT
66 GCAAGCTTTGATTCTTGTAACAGTCCCCG-TTCTTTTCAAGATTGGGAACCAAAAACACATTCCC
* *
2169850 TTCGTTAGGATACCCGACATTGACGCTTTGGTGTCAAAAGAAAAGGTTTTCTTTCCTCCGATTTT
130 TTCGTTAGGATACCCGACATTAACGCTTTGGTGTCCAAAGAAAAGGTTTTCTTTCCTCCGATTTT
* *
2169915 GATAGAATCAAAGTTTTTCTCTTAAATAAGACAAACATTATTAGTCTTACCAATCCCCATTCTTT
195 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACCAATCCCCATTCTTT
*
2169980 TCAGGATTTGGCACTATAAACATAGTCTTCTCAATAGGATAGACGAAGTTGATGCTTTGGTTTTG
260 TCAGGATTTGGCACTATAAACATAGTCTTCTCAATAGGATAGACGAAATTGATGCTTTGGTTTTG
*
2170045 CAAGAAAGTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAACT
325 CAAGAAAGTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAACA
* *
2170110 TGGATTCTGGTAAGAATCTTCATTCATTTTGTGATTAGGTACTAAAAACACATTCTCCTCATTAG
390 TGGATTCTGGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAG
* *
2170175 GATAAATGATATTTATGGTTTTCTTTTGCATGAAAATCTTTTCTTTACCGC-ATTTTCCTTAAAA
455 GATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCC-CTATTTTCCTTAAAA
*** * * * *
2170239 TTGTAGCTCATCCCTTCAATAAGGCAAGCATTGATTCATGTAATAGTCCCCATTCTTTTCAAGAT
519 TCAAAGCTCATCCCTTAAATAAGGCAAGCTTTGATTCTTGTAACAGTCCCCATTCTTTTCAAGAT
* * **
2170304 TGGGAACCAAAAACATATTCCTTTCGTTAGGATACCCGACATTAATGCTTTGGTGTCATAAGAAA
584 TGGGAACCAAAAACACATTCCTTTCATTAGGATACCCGACATTAACACTTTGGTGTCATAAGAAA
* *
2170369 AGGTTTTCTTTCCTCCATTTTTGATAGAATCAAA-TTATGTCTCTTAAATAAGACAAACATGGTA
649 AGGTTTTCTTT-CTCCATTTTTGATAGAATCAAAGTT-TGTCTCTTAAATAAGACAAACATGATT
* * ** * * *
2170433 AGTCTTTCAAATCCCCGTTCTTTTCATGATTTGGCACTAT-AACATAGTCTTCTCATTAGGATTG
712 AGTCTTACTAATCCCTATTCTTTTCAGGATTTGGCACTATAAACATAGTCTTCTCAATAGGATAG
* * * *
2170497 ACTAAATTGATGCTTTGGTTTTGCAAGAAAGG-CTTTCTCCCCGCCAATCTTTGTAAAGTCTAAG
777 ACGAAATTGATGCTTTGGTTTTGCAAGAAAGGTCTTTCTTCCCTCCAATTTTTGTAAAGTCTAAG
* * * * *
2170561 CCCATGCCTTAAGTGAGACAAACATGGATTCTAGTAATAATCTTCCCTT-ATTTTGTGATTATGC
842 TCTATGCCTCAAGTGAGACAAACATGGATTCTAGTAATAATCTT-CATTCATTTTGTGATTAGGC
* *
2170625 ACTAAAAACACATCCTCCT-ATTTAGGATAAAAGGTATTGATGGTTTT
906 ACTAAAAACACATTCTCCTCA-TTAGGATAAAAGATATTGATGGTTTT
*
2170672 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTATCCTTAAAATCAAAGCTCATCCCTTAAATAAG
1 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCCCTTAAATAAG
* * ** *
2170737 GTAAGCTTTGATTCTTGTAACAGACCCAATTCTTTTCAAGATTGGGAACCAAAAACACATT-TCT
66 GCAAGCTTTGATTCTTGTAACAGTCCCCGTTCTTTTCAAGATTGGGAACCAAAAACACATTCCCT
*
2170801 TCCGTTAGGATACCTGACATTAACGCTTTGGTGTC
131 T-CGTTAGGATACCCGACATTAACGCTTTGGTGTC
2170836 ATAGGAAATG
Statistics
Matches: 4369, Mismatches: 478, Indels: 144
0.88 0.10 0.03
Matches are distributed among these distances:
945 5 0.00
946 112 0.03
947 105 0.02
948 836 0.19
949 154 0.04
950 227 0.05
951 265 0.06
952 989 0.23
953 1410 0.32
954 178 0.04
955 87 0.02
956 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.36
Consensus pattern (952 bp):
CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCCCTTAAATAAG
GCAAGCTTTGATTCTTGTAACAGTCCCCGTTCTTTTCAAGATTGGGAACCAAAAACACATTCCCT
TCGTTAGGATACCCGACATTAACGCTTTGGTGTCCAAAGAAAAGGTTTTCTTTCCTCCGATTTTG
ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACCAATCCCCATTCTTTT
CAGGATTTGGCACTATAAACATAGTCTTCTCAATAGGATAGACGAAATTGATGCTTTGGTTTTGC
AAGAAAGTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAACAT
GGATTCTGGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGG
ATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
AAAGCTCATCCCTTAAATAAGGCAAGCTTTGATTCTTGTAACAGTCCCCATTCTTTTCAAGATTG
GGAACCAAAAACACATTCCTTTCATTAGGATACCCGACATTAACACTTTGGTGTCATAAGAAAAG
GTTTTCTTTCTCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTC
TTACTAATCCCTATTCTTTTCAGGATTTGGCACTATAAACATAGTCTTCTCAATAGGATAGACGA
AATTGATGCTTTGGTTTTGCAAGAAAGGTCTTTCTTCCCTCCAATTTTTGTAAAGTCTAAGTCTA
TGCCTCAAGTGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAA
AAACACATTCTCCTCATTAGGATAAAAGATATTGATGGTTTT
Found at i:2175145 original size:158 final size:158
Alignment explanation
Indices: 2173096--2176521 Score: 583
Period size: 159 Copynumber: 21.6 Consensus size: 158
2173086 GATTGGCGGG
* ** * ** *
2173096 AAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATTTGGTCAATCCTAAT--G-AGACTACGTTTA
1 AAGAAAACCTTTCTTGCAAAACCAAAGCATCAATTTCATCTATCCTAATGAGAAGACTGTGTTTT
* * * * * * * ** *
2173158 TAGTACCAAATCCTGAAAACAATGGGGATTTGAAAGACTTATTATGATTGTCTTATTTAAGAGAC
66 TAGTGCCAAATCATGAAAAGAATAGGGATTAGTAAGACTAACCATGTTTGTCTTATTTAAGAGAC
* * * *
2173223 ATATTTTGATTCTATCAAAAACGGTGGA
131 AAACTTTGATTCTATCAAAATCGGAGGA
* * * * * * * * *
2173251 AAGAAAAACTTTTCTTACTACACCAAAGCATCAATGTT-TTGTATCCTAATGA-AGGGAATGTGA
1 AAG-AAAACCTTTCTTGCAAAACCAAAGCATCAAT-TTCATCTATCCTAATGAGA-AGACTGTGT
* * * * * * * * * * * *
2173314 TTTTAGTTCCCAATCTTGAAAACAAT-GGCAACTGTTGCAAGA--ATCAATGCTTGCCTTTTTTA
63 TTTTAGTGCCAAATCATGAAAAGAATAGG-GA-T-TAGTAAGACTAACCATGTTTGTCTTATTTA
** * ** * *
2173376 A-AGGATGAACTTTGATTTTAAGGAAAATAGG-GCA
125 AGA-GACAAACTTTGATTCT-ATCAAAATCGGAGGA
** * ** * * * * *
2173410 AAGAAAAGATTTTCATGCAAAAAAAAAACCATAAATATT-ATTTATCCTAATGAGGAGAATGTGT
1 AAGAAAA-CCTTTCTTGC-AAAACCAAAGCATCAAT-TTCATCTATCCTAATGAGAAGACTGTGT
** * * * * * *
2173474 TTTTAGTGCTGAATCA-CAAAATGAAT-GAAGATTATTACTAGA--ATCCATGTTTGTCTTACTC
63 TTTTAGTGCCAAATCATGAAAA-GAATAG-GGATTAGTA--AGACTAACCATGTTTGTCTTATTT
* * * * *
2173535 GAG-GCATAAACTTAGACTT-TA-CAAAAATTGGAGGG
124 AAGAG-ACAAACTTTGA-TTCTATC-AAAATCGGAGGA
* * * *
2173570 AAGAAAACCTTTCTTGCAAAACCAAAGCATCAATTTCGTCTATCCTATTGAGAAGACTATGTTTA
1 AAGAAAACCTTTCTTGCAAAACCAAAGCATCAATTTCATCTATCCTAATGAGAAGACTGTGTTTT
* * *
2173635 TAGTGCCAAATCATGGAAAGAATAAGGATTGGTAAGACTAACCATGTTTGTCTTATTTAAGAGAC
66 TAGTGCCAAATCATGAAAAGAATAGGGATTAGTAAGACTAACCATGTTTGTCTTATTTAAGAGAC
*
2173700 AAACTTTGATTCTATCAAAATCGGAAGA
131 AAACTTTGATTCTATCAAAATCGGAGGA
* * * * ** *
2173728 AAGCAAACCTTTTCCTATG--ACACCAAAGCATCAATGTCGA-GTATCGGAATGA-AAGGCATGT
1 AAGAAAACC-TTT-CT-TGCAAAACCAAAGCATCAATTTC-ATCTATCCTAATGAGAAGAC-TGT
* * * * * * * * *
2173789 GGTTTTGGTTCCCAATCTTGAAAAGAATGGGGACTGCTA-CAAGAATCAA--A-GCTTGTCTTAT
61 GTTTTTAGTGCCAAATCATGAAAAGAATAGGGA-T--TAGTAAGACT-AACCATGTTTGTCTTAT
* ** ** * ** * *
2173850 TTAAGGGATGAGTTTTGATTTTAAGGAAAATAGG-GTA
122 TTAAGAGACAAACTTTGATTCT-ATCAAAATCGGAGGA
** * * * * * * *
2173887 AAGAAAATATTTTCATGCAAAACAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTT
1 AAGAAAA-CCTTTCTTGCAAAACCAAAGCATCAATTTCATCTATCCTAATGAGAAGACTGTGTTT
* * * * * * * * *
2173952 TTAGTACCTAATC--GCAAATGAA-AGAAGATTATTACTAGA--ATCAATGTTTGTCTCACTT--
65 TTAGTGCCAAATCATG-AAAAGAATAG-GGATTAGTA--AGACTAACCATGTTTGTCTTATTTAA
* * * *
2174010 GAGGCATAGACTTAGACTT-TA-CAAAAATTGGTGGGA
126 GAGACA-A-ACTTTGA-TTCTATC-AAAATCGG-AGGA
* * * * * * *
2174046 AAGAAGA-CTTTCTTGCAAAACCAAATCATAAATTTCGTCTATCCTATTGAGAAGACTATGTTTA
1 AAGAAAACCTTTCTTGCAAAACCAAAGCATCAATTTCATCTATCCTAATGAGAAGACTGTGTTTT
* * * * * * *
2174110 CAGTG-CAAATCCTGTAAAGAATGGGGATTAGTAAGACTAATCATGTTTGCCTTATTTAAAAGAC
66 TAGTGCCAAATCATGAAAAGAATAGGGATTAGTAAGACTAACCATGTTTGTCTTATTTAAGAGAC
* *
2174174 AAACTTTGATTCAATCAAAAACGGAGGA
131 AAACTTTGATTCTATCAAAATCGGAGGA
*** * * * * ** * * *
2174202 AAGAAAACCTTTTCTTATGACACCAAAGCGTTAATGTCGGGC-ATCCTAACGA-AAGGAATGTGC
1 AAGAAAACC-TTTCTTGCAAAACCAAAGCATCAATTTC-ATCTATCCTAATGAGAA-GACTGTGT
* * * * * * * * * *
2174265 TTTTGGTTCC-AATCTTGAAAAGAATGGGGACTATTTCAA-A--AATCAAAGCTTGACTTATTTA
63 TTTTAGTGCCAAATCATGAAAAGAATAGGGATTA-GT-AAGACTAA-CCATGTTTGTCTTATTTA
* ** * * ** * *
2174326 ATAGATTAGCTTTGATTTTAAGGAAAATAGG-GCA
125 AGAGACAAACTTTGATTCT-ATCAAAATCGGAGGA
** ** * ** * * * *
2174360 AAGAAAAGATTTTCATT-CAAAAGAAAACCATCAATACCTTTTATCCTAATGAGGAGAATGTGTT
1 AAGAAAA-CCTTTC-TTGCAAAACCAAAGCATCAATTTCATCTATCCTAATGAGAAGACTGTGTT
* * * * * * * *
2174424 TTTAGTG-CATAATCA-CAAAATAAGT-GAAGATTATTCCTAGA--ACCCAAGTTTGTCTCT-CT
64 TTTAGTGCCA-AATCATGAAAAGAA-TAG-GGATTAGT--AAGACTAACCATGTTTGTCT-TATT
** * * * *
2174483 TAAG-G-CATGGGCTTAGACTT-TA-CAAAGATTGGCGGG
123 TAAGAGACA--AACTTTGA-TTCTATCAAA-ATCGGAGGA
* * *
2174519 AAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATTT-AGT-TAATCCTGATGAGAAGACTATGTT
1 AAGAAAACCTTTCTTGCAAAACCAAAGCATCAATTTCA-TCT-ATCCTAATGAGAAGACTGTGTT
* * * * * * * * **
2174582 TATAGTACTAAATCCTGAAAAGAATGGGGATTTGAAAGACTTATTATGTTTGTCTTATTTAAGAG
64 TTTAGTGCCAAATCATGAAAAGAATAGGGATTAGTAAGACTAACCATGTTTGTCTTATTTAAGAG
* * * *
2174647 ACATACTTTGATTCTATCAAAAACAGTGGA
129 ACAAACTTTGATTCTATCAAAATCGGAGGA
* * * * * * * * *
2174677 AAGAAAAACTTTTCTTACTACACCAAAGCATCAATGTCCTGTATCCT-ATTA-AAGGGAATGTGT
1 AAG-AAAACCTTTCTTGCAAAACCAAAGCATCAATTTCATCTATCCTAATGAGAA--GACTGTGT
* * * * * * * * * *
2174740 TTTTAGTTCCTAATCTTGGAAAGAA-AGGCGGCAGTT-GCAAGA--ATCAATGCTTGCCTTTTTT
63 TTTTAGTGCCAAATCATGAAAAGAATA-G-GG-A-TTAGTAAGACTAACCATGTTTGTCTTATTT
* ** * ** * *
2174801 AAGGGATGAACTTTGATTTTAAGGAAAATAGG-GCA
124 AAGAGACAAACTTTGATTCT-ATCAAAATCGGAGGA
** * * * * *
2174836 AAGAAAAGATTTTCATGCAAAA-GAAAGCCATCAATATT-ATTTATCCTAATGAGGAGAATGTGT
1 AAGAAAA-CCTTTCTTGCAAAACCAAAG-CATCAAT-TTCATCTATCCTAATGAGAAGACTGTGT
* * * * * * ** * *
2174899 TTTTAGTGTCGAATGA-CAAAATAA-ATGAAGATTTTTACTAGA--ATCCATGTTTGTCTTA-CT
63 TTTTAGTGCCAAATCATGAAAAGAATA-G-GGATTAGTA--AGACTAACCATGTTTGTCTTATTT
* * * * *
2174959 -CGAGGCATAGACTTAGACTT-TA-CAAAAATTGGAGGG
124 AAGAGACA-A-ACTTTGA-TTCTATC-AAAATCGGAGGA
* * *
2174995 AAGAAAACCTTTCTTGCAAAACCAAAGCATCAATTTCATCTATCCTATTGAGAAGACTATGTTTA
1 AAGAAAACCTTTCTTGCAAAACCAAAGCATCAATTTCATCTATCCTAATGAGAAGACTGTGTTTT
*
2175060 TAGTGCCAAATCATGAAAAGAATAGGGATTGGTAAGACTAACCATGTTTGTCTTATTTAAGAGAC
66 TAGTGCCAAATCATGAAAAGAATAGGGATTAGTAAGACTAACCATGTTTGTCTTATTTAAGAGAC
2175125 AAACTTTGATTCTATCAAAATCGGAGGA
131 AAACTTTGATTCTATCAAAATCGGAGGA
* * ** * * * * * **
2175153 AAGCAAACCTTTTCCTATAACACTAAAGCGTCAATGTCGA-GTATCGAAATGA-AAGACATGTGT
1 AAGAAAACC-TTTCTTGCAAAACCAAAGCATCAATTTC-ATCTATCCTAATGAGAAGAC-TGTGT
* * * * * * *
2175216 TTTTTGTTTCC-AATCTTGAAAAGAATGGGGACTGCTA-CAAGAATCAA--A-GCTTGTCTTATT
63 TTTTAG-TGCCAAATCATGAAAAGAATAGGGA-T--TAGTAAGACT-AACCATGTTTGTCTTATT
* * * * ** * *
2175276 TAAGGGACGAGCTTTGATTTTAAGGAAAATAGG-GTA
123 TAAGAGACAAACTTTGATTCT-ATCAAAATCGGAGGA
** * * * * * *
2175312 AAGAAAAGATTTTCATGCAAAACAAAACCATCAATATCATTTATCCTAATGAGAAGAATGTGTTT
1 AAGAAAA-CCTTTCTTGCAAAACCAAAGCATCAATTTCATCTATCCTAATGAGAAGACTGTGTTT
* * * * * * * ** * *
2175377 TTTGTACCTAATTA-CAAAATGAA-AGAAGATTATTACTAC-AATCCATGTTTGTCTCACTT--G
65 TTAGTGCCAAATCATGAAAA-GAATAG-GGATTAGTAAGACTAA-CCATGTTTGTCTTATTTAAG
* * * *
2175437 AGGCATAGACTTAGACTT-TA-CAAAAATTGGTGGGA
127 AGACA-A-ACTTTGA-TTCTATC-AAAATCGG-AGGA
* * * *
2175472 AAGAAGA-CTTTCCTGCAAAACCAAATCATCAATTTCATCTATCC-AATTGAGAAGACTATGTTT
1 AAGAAAACCTTTCTTGCAAAACCAAAGCATCAATTTCATCTATCCTAA-TGAGAAGACTGTGTTT
** * * * *
2175535 ACAGTG-CAAATCCT-ATAAAGAAT-GGAGATTAGTAAGACTAATCATGTTTGCCTTATTTAAAA
65 TTAGTGCCAAATCATGA-AAAGAATAGG-GATTAGTAAGACTAACCATGTTTGTCTTATTTAAGA
* *
2175597 GACAAACATTGATTCTATCAAAAACGGAGGA
128 GACAAACTTTGATTCTATCAAAATCGGAGGA
*** * * *** * * *
2175628 AAGAAAACCTTTTCTTATGACACCAAAGCATTAATGTT-GGGTATCCTAACGA-AATGAATGTGC
1 AAGAAAACC-TTTCTTGCAAAACCAAAGCATCAAT-TTCATCTATCCTAATGAGAA-GACTGTGT
* * * * * * * * *
2175691 TTTTAGTTCCTAATCTTGAAAAGAATGGGGACTATTTCAA-A--AATCAAAGTTTGACTTATTTA
63 TTTTAGTGCCAAATCATGAAAAGAATAGGGATTA-GT-AAGACTAA-CCATGTTTGTCTTATTTA
** * * ** * *
2175753 AGAGATTAGCTTTGATTTTAAGGAAAATAGG-GCA
125 AGAGACAAACTTTGATTCT-ATCAAAATCGGAGGA
** ** * ** * * * * *
2175787 AAGAAAAGATTTTCATT-CAAAAGAAAACCATCAATACCTTTTCTCCTAATGAGGAGAATGTGTT
1 AAGAAAA-CCTTTC-TTGCAAAACCAAAGCATCAATTTCATCTATCCTAATGAGAAGACTGTGTT
* * * * * * * *
2175851 TTTAGTG-CATAATCA-CAAAATAAGT-GAAGATTATTCCTAGA--ACCCAAGTTTGTCTCT-CT
64 TTTAGTGCCA-AATCATGAAAAGAA-TAG-GGATTAGT--AAGACTAACCATGTTTGTCT-TATT
** * * * *
2175910 TAAG-G-CATGGGCTTAGACTT-TA-CAAAGATTGGCGGG
123 TAAGAGACA--AACTTTGA-TTCTATCAAA-ATCGGAGGA
* * *
2175946 AAGAAAGCCTTTCTTGCAAAACCAAAGCA-CAAATTT-AGTCAATCCTAATGAGAAGACTATGTT
1 AAGAAAACCTTTCTTGCAAAACCAAAGCATC-AATTTCA-TCTATCCTAATGAGAAGACTGTGTT
* * * * * * * * **
2176009 TATAGTACCAAATCCTGAAAAGAATGGGGATTTGAAAGAGTTATTATGTTTGTCTTATTTAAGAG
64 TTTAGTGCCAAATCATGAAAAGAATAGGGATTAGTAAGACTAACCATGTTTGTCTTATTTAAGAG
* * * * *
2176074 ATATACTTTGATTCTATCAAAAACAGTGGA
129 ACAAACTTTGATTCTATCAAAATCGGAGGA
* * * * * * * * * *
2176104 AAGAAAAACTTTTCTTACTATACCAAAGCATCAATGTCCTGTATCCTAATGA-AGGGAATGTGCT
1 AAG-AAAACCTTTCTTGCAAAACCAAAGCATCAATTTCATCTATCCTAATGAGA-AGACTGTGTT
* * * * * * * * * * * *
2176168 TTTAGTTCCCAATCTTGAAAATAATGGCGGCTGTTGCAAGA--ATCAATGCTTGT-TTTTTTAAG
64 TTTAGTGCCAAATCATGAAAAGAATAG-GGAT-TAGTAAGACTAACCATGTTTGTCTTATTTAAG
* ** * ** * *
2176230 GGATGAACTTTGATTTTAAGGAAAATTGG-GCA
127 AGACAAACTTTGATTCT-ATCAAAATCGGAGGA
** * ** * * * * *
2176262 AAGAAAAGATTTTCATGCAAAAGAAAACCGTCAATATT-ATTTATCCTAATGAGGAGAATGTGTT
1 AAGAAAA-CCTTTCTTGCAAAACCAAAGCATCAAT-TTCATCTATCCTAATGAGAAGACTGTGTT
** * * ** * * *
2176326 TTTAGTGCTGAATCA-CAAAATTAAT-GAACATTATTACTAGA--ATCCATGTTTGTCTTA-CT-
64 TTTAGTGCCAAATCATGAAAA-GAATAG-GGATTAGTA--AGACTAACCATGTTTGTCTTATTTA
* * * * *
2176385 CGAGGCATAGACTTAGACTT-T-TCAAAAATTGGAGGG
125 AGAGACA-A-ACTTTGA-TTCTATC-AAAATCGGAGGA
* * * *
2176421 AAGAAAACCTTTCTTGCAAAACCAAAGCATCAATTTCGTCTATCCTATTGAGAAGACTATGTTTA
1 AAGAAAACCTTTCTTGCAAAACCAAAGCATCAATTTCATCTATCCTAATGAGAAGACTGTGTTTT
*
2176486 TAGTGCCAAATCATGAAAAGAATAGGGATTGGTAAG
66 TAGTGCCAAATCATGAAAAGAATAGGGATTAGTAAG
2176522 TGATGACAAC
Statistics
Matches: 2294, Mismatches: 739, Indels: 475
0.65 0.21 0.14
Matches are distributed among these distances:
155 11 0.00
156 85 0.04
157 208 0.09
158 869 0.38
159 885 0.39
160 191 0.08
161 37 0.02
162 8 0.00
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.31
Consensus pattern (158 bp):
AAGAAAACCTTTCTTGCAAAACCAAAGCATCAATTTCATCTATCCTAATGAGAAGACTGTGTTTT
TAGTGCCAAATCATGAAAAGAATAGGGATTAGTAAGACTAACCATGTTTGTCTTATTTAAGAGAC
AAACTTTGATTCTATCAAAATCGGAGGA
Found at i:2175966 original size:475 final size:472
Alignment explanation
Indices: 2172384--2176521 Score: 5137
Period size: 476 Copynumber: 8.7 Consensus size: 472
2172374 AAAATAGGGC
* * *** ** * * *
2172384 AAAGAATGGTGACAGTTGCAAGAATCAATTATTTCCTTTTTTAA-AGGTGAACTTTGATTTTAAG
1 AAAGAATGGGGACTGTTGCAAGAATCAAAGCTTGACTTATTTAAGAGATGAGCTTTGATTTTAAG
* * * * * * *
2172448 GAAAATAGGGCAAAGAAAAAAATTTCATGCAGAACAAAACCATCAAT-TTCTTTATCCTAACGAA
66 GAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATACT-TTTATCCTAATGAG
* **
2172512 GAGAATGTGTTTTTAGTACCTAATCACAAAATGAAAAAAGATTATTACTAGAAT-CAATGTTTGT
130 GAGAATGTGTTTTTAGT-GCTAATCACAAAAT-AATGAAGATTATTACTAGAATCCAA-GTTTGT
* * * *
2172576 CTCACTTGAGGCATAGACATAGACTTTACAAAAATTGGTGGGAA-AGAAGACTTTCTTGCAAAAC
192 CTCTCTTGAGGCATAGACTTAGACTTTACAAAAATTGGAGGGAAGA-AAGCCTTTCTTGCAAAAC
* * *
2172640 CAAAACATCAATTTCGTCTATCCTATCGAGAAGACTATGTTTATAGTGCAAATCCTGTAAAGAAT
256 CAAAGCATCAATTTCGTCTATCCTATTGAGAAGACTATGTTTATAGTGCAAATCCTGAAAAGAAT
* *
2172705 GGGGATTAGTAAGACTAATCATGTTTGCCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACG
321 GGGGATTAGTAAGACTAATCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACG
** * * *
2172770 GAGGAAAGAAAACCTTTTCTTATGACACCAAAGTGTTATTGTCGGGTATCCTAATGAAAGGATTG
386 GAGGAAAGAAAACCTTTTCTTATGACACCAAAGCATCAATGTCGGGTATCCTAATGAAAGGAATG
*
2172835 TGCTTTTGGTTCCCAATCTTGA
451 TGCTTTTAGTTCCCAATCTTGA
* * * * * *
2172857 AAAGAATGGGGAATGTTTCAAAAATCAAAGCTTGAATTATTTAAGAGATTAGCTTTGATTTGAAG
1 AAAGAATGGGGACTGTTGCAAGAATCAAAGCTTGACTTATTTAAGAGATGAGCTTTGATTTTAAG
* *
2172922 GAAAATAGGGCAAAGAAAAGATTTTCATACAAAAAAAAAAAACCATCAATACCTTTTATCCTAAT
66 GAAAATAGGGCAAAGAAAAGATTTTCATGC---AAAAGAAAACCATCAATA-CTTTTATCCTAAT
* * *
2172987 GAGGAGAATGTGTTTTTAGTGCATAATCAAAAAATAAGTGAAGATTATTCCTAGAACCCAAGTTT
127 GAGGAGAATGTGTTTTTAGTGC-TAATCACAAAATAA-TGAAGATTATTACTAGAATCCAAGTTT
* * * * *
2173052 GTCTCTCTTAAGGCATTGGCTTAGACTTTACAAAGATTGGCGGGAAGAAAGCCTTTCTTGCAAAA
190 GTCTCTCTTGAGGCATAGACTTAGACTTTACAAAAATTGGAGGGAAGAAAGCCTTTCTTGCAAAA
* * * * * *
2173117 CCAAAGCATCAATTTGGTCAATCCTAAT--G-AGACTACGTTTATAGTACCAAATCCTGAAAACA
255 CCAAAGCATCAATTTCGTCTATCCTATTGAGAAGACTATGTTTATAGT-GCAAATCCTGAAAAGA
* * * * * * *
2173179 ATGGGGATTTGAAAGACTTATTATGATTGTCTTATTTAAGAGACATATTTTGATTCTATCAAAAA
319 ATGGGGATTAGTAAGACTAATCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA
* * *** *
2173244 CGGTGGAAAGAAAAACTTTTCTTACT-ACACCAAAGCATCAATGTTTTGTATCCTAATGAAGGGA
384 CGGAGGAAAGAAAACCTTTTCTTA-TGACACCAAAGCATCAATGTCGGGTATCCTAATGAAAGGA
*
2173308 ATGTGATTTTAGTTCCCAATCTTGA
448 ATGTGCTTTTAGTTCCCAATCTTGA
* ** * * * *
2173333 AAACAATGGCAACTGTTGCAAGAATCAATGCTTGCCTTTTTTAA-AGGATGAACTTTGATTTTAA
1 AAAGAATGGGGACTGTTGCAAGAATCAAAGCTTGACTTATTTAAGA-GATGAGCTTTGATTTTAA
* * *
2173397 GGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAAAAAAACCATAAATATTATTTATCCTAATG
65 GGAAAATAGGGCAAAGAAAAGATTTTCATGC-AAAAGAAAACCATCAATACT-TTTATCCTAATG
*
2173462 AGGAGAATGTGTTTTTAGTGCTGAATCACAAAATGAATGAAGATTATTACTAGAATCCATGTTTG
128 AGGAGAATGTGTTTTTAGTGCT-AATCACAAAAT-AATGAAGATTATTACTAGAATCCAAGTTTG
* * *
2173527 TCT-TACTCGAGGCATAAACTTAGACTTTACAAAAATTGGAGGGAAGAAAACCTTTCTTGCAAAA
191 TCTCT-CTTGAGGCATAGACTTAGACTTTACAAAAATTGGAGGGAAGAAAGCCTTTCTTGCAAAA
* *
2173591 CCAAAGCATCAATTTCGTCTATCCTATTGAGAAGACTATGTTTATAGTGCCAAATCATGGAAAGA
255 CCAAAGCATCAATTTCGTCTATCCTATTGAGAAGACTATGTTTATAGTG-CAAATCCTGAAAAGA
** * * *
2173656 ATAAGGATTGGTAAGACTAACCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAT
319 ATGGGGATTAGTAAGACTAATCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA
* * * * ** *
2173721 CGGAAGAAAGCAAACCTTTTCCTATGACACCAAAGCATCAATGTCGAGTATCGGAATGAAAGGCA
384 CGGAGGAAAGAAAACCTTTTCTTATGACACCAAAGCATCAATGTCGGGTATCCTAATGAAAGGAA
* *
2173786 TGTGGTTTTGGTTCCCAATCTTGA
449 TGTGCTTTTAGTTCCCAATCTTGA
* * * * *
2173810 AAAGAATGGGGACTGCTACAAGAATCAAAGCTTGTCTTATTTAAGGGATGAGTTTTGATTTTAAG
1 AAAGAATGGGGACTGTTGCAAGAATCAAAGCTTGACTTATTTAAGAGATGAGCTTTGATTTTAAG
* * * *
2173875 GAAAATAGGGTAAAGAAAATATTTTCATGCAAAACAAAACCATCAATATCATTTATCCTAATGAG
66 GAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATA-CTTTTATCCTAATGAG
* * *
2173940 GAGAATGTGTTTTTAGTACCTAATCGC-AAATGAAAGAAGATTATTACTAGAAT-CAATGTTTGT
130 GAGAATGTGTTTTTAGT-GCTAATCACAAAAT-AATGAAGATTATTACTAGAATCCAA-GTTTGT
* * *
2174003 CTCACTTGAGGCATAGACTTAGACTTTACAAAAATTGGTGGGAA-AGAAGACTTTCTTGCAAAAC
192 CTCTCTTGAGGCATAGACTTAGACTTTACAAAAATTGGAGGGAAGA-AAGCCTTTCTTGCAAAAC
* * * *
2174067 CAAATCATAAATTTCGTCTATCCTATTGAGAAGACTATGTTTACAGTGCAAATCCTGTAAAGAAT
256 CAAAGCATCAATTTCGTCTATCCTATTGAGAAGACTATGTTTATAGTGCAAATCCTGAAAAGAAT
* * *
2174132 GGGGATTAGTAAGACTAATCATGTTTGCCTTATTTAAAAGACAAACTTTGATTCAATCAAAAACG
321 GGGGATTAGTAAGACTAATCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACG
* * * *
2174197 GAGGAAAGAAAACCTTTTCTTATGACACCAAAGCGTTAATGTCGGGCATCCTAACGAAAGGAATG
386 GAGGAAAGAAAACCTTTTCTTATGACACCAAAGCATCAATGTCGGGTATCCTAATGAAAGGAATG
*
2174262 TGCTTTTGGTT-CCAATCTTGA
451 TGCTTTTAGTTCCCAATCTTGA
* * * * *
2174283 AAAGAATGGGGACTATTTCAAAAATCAAAGCTTGACTTATTTAATAGATTAGCTTTGATTTTAAG
1 AAAGAATGGGGACTGTTGCAAGAATCAAAGCTTGACTTATTTAAGAGATGAGCTTTGATTTTAAG
*
2174348 GAAAATAGGGCAAAGAAAAGATTTTCATTCAAAAGAAAACCATCAATACCTTTTATCCTAATGAG
66 GAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATA-CTTTTATCCTAATGAG
* *
2174413 GAGAATGTGTTTTTAGTGCATAATCACAAAATAAGTGAAGATTATTCCTAGAACCCAAGTTTGTC
130 GAGAATGTGTTTTTAGTGC-TAATCACAAAATAA-TGAAGATTATTACTAGAATCCAAGTTTGTC
* * * * *
2174478 TCTCTTAAGGCATGGGCTTAGACTTTACAAAGATTGGCGGGAAGAAAGCCTTTCTTGCAAAACCA
193 TCTCTTGAGGCATAGACTTAGACTTTACAAAAATTGGAGGGAAGAAAGCCTTTCTTGCAAAACCA
* *
2174543 AAGCATCAATTTAGT-TAATCCTGA-TGAGAAGACTATGTTTATAGTACTAAATCCTGAAAAGAA
258 AAGCATCAATTTCGTCT-ATCCT-ATTGAGAAGACTATGTTTATAGTGC-AAATCCTGAAAAGAA
* * * * *
2174606 TGGGGATTTGAAAGACTTATTATGTTTGTCTTATTTAAGAGACATACTTTGATTCTATCAAAAAC
320 TGGGGATTAGTAAGACTAATCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAC
* * * ** *
2174671 AGTGGAAAGAAAAACTTTTCTTACT-ACACCAAAGCATCAATGTCCTGTATCCT-ATTAAAGGGA
385 GGAGGAAAGAAAACCTTTTCTTA-TGACACCAAAGCATCAATGTCGGGTATCCTAATGAAA-GGA
* * *
2174734 ATGTGTTTTTAGTTCCTAATCTTGG
448 ATGTGCTTTTAGTTCCCAATCTTGA
* * * * * * *
2174759 AAAGAAAGGCGG-CAGTTGCAAGAATCAATGCTTGCCTTTTTTAAGGGATGAACTTTGATTTTAA
1 AAAGAATGG-GGACTGTTGCAAGAATCAAAGCTTGACTTATTTAAGAGATGAGCTTTGATTTTAA
* *
2174823 GGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAGCCATCAATATTATTTATCCTAATGA
65 GGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATACT-TTTATCCTAATGA
* * * *
2174888 GGAGAATGTGTTTTTAGTGTCGAATGACAAAATAAATGAAGATTTTTACTAGAATCCATGTTTGT
129 GGAGAATGTGTTTTTAGTG-CTAATCACAAAAT-AATGAAGATTATTACTAGAATCCAAGTTTGT
* *
2174953 CT-TACTCGAGGCATAGACTTAGACTTTACAAAAATTGGAGGGAAGAAAACCTTTCTTGCAAAAC
192 CTCT-CTTGAGGCATAGACTTAGACTTTACAAAAATTGGAGGGAAGAAAGCCTTTCTTGCAAAAC
* *
2175017 CAAAGCATCAATTTCATCTATCCTATTGAGAAGACTATGTTTATAGTGCCAAATCATGAAAAGAA
256 CAAAGCATCAATTTCGTCTATCCTATTGAGAAGACTATGTTTATAGTG-CAAATCCTGAAAAGAA
* * * *
2175082 TAGGGATTGGTAAGACTAACCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAATC
320 TGGGGATTAGTAAGACTAATCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAC
* * * * * * **
2175147 GGAGGAAAGCAAACCTTTTCCTATAACACTAAAGCGTCAATGTCGAGTATCGAAATGAAA-GACA
385 GGAGGAAAGAAAACCTTTTCTTATGACACCAAAGCATCAATGTCGGGTATCCTAATGAAAGGA-A
* * *
2175211 TGTGTTTTTTGTTTCCAATCTTGA
449 TGTGCTTTTAGTTCCCAATCTTGA
* * * * *
2175235 AAAGAATGGGGACTGCTACAAGAATCAAAGCTTGTCTTATTTAAGGGACGAGCTTTGATTTTAAG
1 AAAGAATGGGGACTGTTGCAAGAATCAAAGCTTGACTTATTTAAGAGATGAGCTTTGATTTTAAG
* * *
2175300 GAAAATAGGGTAAAGAAAAGATTTTCATGCAAAACAAAACCATCAATATCATTTATCCTAATGAG
66 GAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATA-CTTTTATCCTAATGAG
* * * * * * *
2175365 AAGAATGTGTTTTTTGTACCTAATTACAAAATGAAAGAAGATTATTACTACAATCCATGTTTGTC
130 GAGAATGTGTTTTTAGT-GCTAATCACAAAAT-AATGAAGATTATTACTAGAATCCAAGTTTGTC
* * * *
2175430 TCACTTGAGGCATAGACTTAGACTTTACAAAAATTGGTGGGAA-AGAAGACTTTCCTGCAAAACC
193 TCTCTTGAGGCATAGACTTAGACTTTACAAAAATTGGAGGGAAGA-AAGCCTTTCTTGCAAAACC
* * * *
2175494 AAATCATCAATTTCATCTATCCAATTGAGAAGACTATGTTTACAGTGCAAATCCT-ATAAAGAAT
257 AAAGCATCAATTTCGTCTATCCTATTGAGAAGACTATGTTTATAGTGCAAATCCTGA-AAAGAAT
* * * *
2175558 GGAGATTAGTAAGACTAATCATGTTTGCCTTATTTAAAAGACAAACATTGATTCTATCAAAAACG
321 GGGGATTAGTAAGACTAATCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACG
* * * *
2175623 GAGGAAAGAAAACCTTTTCTTATGACACCAAAGCATTAATGTTGGGTATCCTAACGAAATGAATG
386 GAGGAAAGAAAACCTTTTCTTATGACACCAAAGCATCAATGTCGGGTATCCTAATGAAAGGAATG
*
2175688 TGCTTTTAGTTCCTAATCTTGA
451 TGCTTTTAGTTCCCAATCTTGA
* * * * *
2175710 AAAGAATGGGGACTATTTCAAAAATCAAAGTTTGACTTATTTAAGAGATTAGCTTTGATTTTAAG
1 AAAGAATGGGGACTGTTGCAAGAATCAAAGCTTGACTTATTTAAGAGATGAGCTTTGATTTTAAG
* *
2175775 GAAAATAGGGCAAAGAAAAGATTTTCATTCAAAAGAAAACCATCAATACCTTTTCTCCTAATGAG
66 GAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATA-CTTTTATCCTAATGAG
* *
2175840 GAGAATGTGTTTTTAGTGCATAATCACAAAATAAGTGAAGATTATTCCTAGAACCCAAGTTTGTC
130 GAGAATGTGTTTTTAGTGC-TAATCACAAAATAA-TGAAGATTATTACTAGAATCCAAGTTTGTC
* * * * *
2175905 TCTCTTAAGGCATGGGCTTAGACTTTACAAAGATTGGCGGGAAGAAAGCCTTTCTTGCAAAACCA
193 TCTCTTGAGGCATAGACTTAGACTTTACAAAAATTGGAGGGAAGAAAGCCTTTCTTGCAAAACCA
* * * *
2175970 AAGCA-CAAATTTAGTCAATCCTAATGAGAAGACTATGTTTATAGTACCAAATCCTGAAAAGAAT
258 AAGCATC-AATTTCGTCTATCCTATTGAGAAGACTATGTTTATAGT-GCAAATCCTGAAAAGAAT
* * * * * * * *
2176034 GGGGATTTGAAAGAGTTATTATGTTTGTCTTATTTAAGAGATATACTTTGATTCTATCAAAAACA
321 GGGGATTAGTAAGACTAATCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACG
* * * ** *
2176099 GTGGAAAGAAAAACTTTTCTTACT-ATACCAAAGCATCAATGTCCTGTATCCTAATGAAGGGAAT
386 GAGGAAAGAAAACCTTTTCTTA-TGACACCAAAGCATCAATGTCGGGTATCCTAATGAAAGGAAT
2176163 GTGCTTTTAGTTCCCAATCTTGA
450 GTGCTTTTAGTTCCCAATCTTGA
* * * * * *
2176186 AAATAATGGCGG-CTGTTGCAAGAATCAATGCTTG-TTTTTTTAAGGGATGAACTTTGATTTTAA
1 AAAGAATGG-GGACTGTTGCAAGAATCAAAGCTTGACTTATTTAAGAGATGAGCTTTGATTTTAA
* * *
2176249 GGAAAATTGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCGTCAATATTATTTATCCTAATGA
65 GGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATACT-TTTATCCTAATGA
* *
2176314 GGAGAATGTGTTTTTAGTGCTGAATCACAAAATTAATGAACATTATTACTAGAATCCATGTTTGT
129 GGAGAATGTGTTTTTAGTGCT-AATCACAAAA-TAATGAAGATTATTACTAGAATCCAAGTTTGT
* * *
2176379 CT-TACTCGAGGCATAGACTTAGACTTTTCAAAAATTGGAGGGAAGAAAACCTTTCTTGCAAAAC
192 CTCT-CTTGAGGCATAGACTTAGACTTTACAAAAATTGGAGGGAAGAAAGCCTTTCTTGCAAAAC
*
2176443 CAAAGCATCAATTTCGTCTATCCTATTGAGAAGACTATGTTTATAGTGCCAAATCATGAAAAGAA
256 CAAAGCATCAATTTCGTCTATCCTATTGAGAAGACTATGTTTATAGTG-CAAATCCTGAAAAGAA
* *
2176508 TAGGGATTGGTAAG
320 TGGGGATTAGTAAG
2176522 TGATGACAAC
Statistics
Matches: 3146, Mismatches: 448, Indels: 140
0.84 0.12 0.04
Matches are distributed among these distances:
472 1 0.00
473 186 0.06
474 480 0.15
475 948 0.30
476 1117 0.36
477 272 0.09
478 137 0.04
479 5 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (472 bp):
AAAGAATGGGGACTGTTGCAAGAATCAAAGCTTGACTTATTTAAGAGATGAGCTTTGATTTTAAG
GAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATACTTTTATCCTAATGAGG
AGAATGTGTTTTTAGTGCTAATCACAAAATAATGAAGATTATTACTAGAATCCAAGTTTGTCTCT
CTTGAGGCATAGACTTAGACTTTACAAAAATTGGAGGGAAGAAAGCCTTTCTTGCAAAACCAAAG
CATCAATTTCGTCTATCCTATTGAGAAGACTATGTTTATAGTGCAAATCCTGAAAAGAATGGGGA
TTAGTAAGACTAATCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGAGGA
AAGAAAACCTTTTCTTATGACACCAAAGCATCAATGTCGGGTATCCTAATGAAAGGAATGTGCTT
TTAGTTCCCAATCTTGA
Found at i:2176508 original size:951 final size:949
Alignment explanation
Indices: 2172384--2176521 Score: 5324
Period size: 951 Copynumber: 4.4 Consensus size: 949
2172374 AAAATAGGGC
* * **
2172384 AAAGAATGGTGACAGTTGCAAGAATCAATTATT-TCCTTTTTTAAAGG-TGAACTTTGATTTTAA
1 AAAGAATGGGGACTGTTGCAAGAATCAATGCTTGT--TTTTTTAAAGGATGAACTTTGATTTTAA
* * * * *
2172447 GGAAAATAGGGCAAAGAAAAAAATTTCATGCAGAACAAAACCATCAAT-TTCTTTATCCTAACGA
64 GGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAACAAAACCATCAATATTATTTATCCTAATGA
* * ** *
2172511 AGAGAATGTGTTTTTAGTACCTAATCACAAAATGAAAAAAGATTATTACTAGAATCAATGTTTGT
129 GGAGAATGTGTTTTTAGT-GCTAATCACAAAATGAATGAAGATTATTACTAGAATCCATGTTTGT
* * * *
2172576 CTCACTTGAGGCATAGACATAGACTTTACAAAAATTGGTGGGAAAGAAGA-CTTTCTTGCAAAAC
193 CTTACTTGAGGCATAGACTTAGACTTTACAAAAATTGGAGGG-AAGAAAACCTTTCTTGCAAAAC
* * *
2172640 CAAAACATCAATTTCGTCTATCCTATCGAGAAGACTATGTTTATAGTG-CAAATCCTGTAAAGAA
257 CAAAGCATCAATTTCGTCTATCCTATTGAGAAGACTATGTTTATAGTGCCAAATCCTGAAAAGAA
*
2172704 TGGGGATTAGTAAGACTAATCATGTTTGCCTTATTTAAAAGACAAACTTTGATTCTATCAAAAAC
322 TGGAGATTAGTAAGACTAATCATGTTTGCCTTATTTAAAAGACAAACTTTGATTCTATCAAAAAC
** * * *
2172769 GGAGGAAAGAAAACCTTTTCTTATGACACCAAAGTGTTATTGTCGGGTATCCTAATGAAAGGATT
387 GGAGGAAAGAAAACCTTTTCTTATGACACCAAAGCATCAATGTCGGGTATCCTAATGAAAGGAAT
* * * *
2172834 GTGCTTTTGGTTCCCAATCTTGAAAAGAATGGGGAATGTTTCAAAAATCAAAGCTTGAATTATTT
452 GTGCTTTTAGTTCCCAATCTTGAAAAGAATGGGGACTATTTCAAAAATCAAAGCTTGACTTATTT
* * * *
2172899 AAGAGATTAGCTTTGATTTGAAGGAAAATAGGGCAAAGAAAAGATTTTCATACAAAAAAAAAAAA
517 AAGAGATGAGCTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGC---AAAAGAAAA
*
2172964 CCATCAATACCTTTTATCCTAATGAGGAGAATGTGTTTTTAGTGCATAATCAAAAAATAAGTGAA
579 CCATCAATACCTTTTATCCTAATGAGGAGAATGTGTTTTTAGTGCATAATCACAAAATAAGTGAA
* * * *
2173029 GATTATTCCTAGAACCCAAGTTTGTCTCTCTTAAGGCATTGGCTTAGACTTTACAAAGATTGGCG
644 GATTATTACTAGAACCCAAGTTTGTCTCTCTTAAGGCATAGACTTAGACTTTACAAAAATTGGCG
* *
2173094 GGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATTTGGTCAATCCTAAT--G-AGACTACGTT
709 GGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATTTAGTCAATCCTAATGAGAAGACTATGTT
* * * *
2173156 TATAGTACCAAATCCTGAAAACAATGGGGATTTGAAAGACTTATTATGATTGTCTTATTTAAGAG
774 TATAGTACCAAATCCTGAAAAGAATGGGGATTTGAAAGACTAATCATGTTTGTCTTATTTAAGAG
* * *
2173221 ACATATTTTGATTCTATCAAAAACGGTGGAAAGAAAAACTTTTCTTACTACACCAAAGCATCAAT
839 ACAAACTTTGATTCTATCAAAAACGGAGGAAAGAAAAACTTTTCTTA-TACACCAAAGCATCAAT
** *
2173286 GTTTTGTATCCTAATGAAGGGAATGTGATTTTAGTTCCCAATCTTGA
903 GTCGTGTATCCTAATGAAGGGAATGTGCTTTTAGTTCCCAATCTTGA
* ** *
2173333 AAACAATGGCAACTGTTGCAAGAATCAATGCTTGCCTTTTTTAAAGGATGAACTTTGATTTTAAG
1 AAAGAATGGGGACTGTTGCAAGAATCAATGCTTG-TTTTTTTAAAGGATGAACTTTGATTTTAAG
* *
2173398 GAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAAAAAAACCATAAATATTATTTATCCTAATGA
65 GAAAATAGGGCAAAGAAAAGATTTTCATGC-AAAACAAAACCATCAATATTATTTATCCTAATGA
2173463 GGAGAATGTGTTTTTAGTGCTGAATCACAAAATGAATGAAGATTATTACTAGAATCCATGTTTGT
129 GGAGAATGTGTTTTTAGTGCT-AATCACAAAATGAATGAAGATTATTACTAGAATCCATGTTTGT
* *
2173528 CTTACTCGAGGCATAAACTTAGACTTTACAAAAATTGGAGGGAAGAAAACCTTTCTTGCAAAACC
193 CTTACTTGAGGCATAGACTTAGACTTTACAAAAATTGGAGGGAAGAAAACCTTTCTTGCAAAACC
* *
2173593 AAAGCATCAATTTCGTCTATCCTATTGAGAAGACTATGTTTATAGTGCCAAATCATGGAAAGAAT
258 AAAGCATCAATTTCGTCTATCCTATTGAGAAGACTATGTTTATAGTGCCAAATCCTGAAAAGAAT
* * * * * *
2173658 -AAGGATTGGTAAGACTAACCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAATC
323 GGA-GATTAGTAAGACTAATCATGTTTGCCTTATTTAAAAGACAAACTTTGATTCTATCAAAAAC
* * * * ** *
2173722 GGAAGAAAGCAAACCTTTTCCTATGACACCAAAGCATCAATGTCGAGTATCGGAATGAAAGGCAT
387 GGAGGAAAGAAAACCTTTTCTTATGACACCAAAGCATCAATGTCGGGTATCCTAATGAAAGGAAT
* * ** * * *
2173787 GTGGTTTTGGTTCCCAATCTTGAAAAGAATGGGGACTGCTACAAGAATCAAAGCTTGTCTTATTT
452 GTGCTTTTAGTTCCCAATCTTGAAAAGAATGGGGACTATTTCAAAAATCAAAGCTTGACTTATTT
* * * * *
2173852 AAGGGATGAGTTTTGATTTTAAGGAAAATAGGGTAAAGAAAATATTTTCATGCAAAACAAAACCA
517 AAGAGATGAGCTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCA
* * * * * *
2173917 TCAATATCATTTATCCTAATGAGGAGAATGTGTTTTTAGTACCTAATCGC-AAATGAA-AGAAGA
582 TCAATACCTTTTATCCTAATGAGGAGAATGTGTTTTTAGTGCATAATCACAAAAT-AAGTGAAGA
* * * *
2173980 TTATTACTAGAA-TCAATGTTTGTCTCACTTGAGGCATAGACTTAGACTTTACAAAAATTGGTGG
646 TTATTACTAGAACCCAA-GTTTGTCTCTCTTAAGGCATAGACTTAGACTTTACAAAAATTGGCGG
* * * * * *
2174044 GAA-AGAAGACTTTCTTGCAAAACCAAATCATAAATTTCGTCTATCCTATTGAGAAGACTATGTT
710 GAAGA-AAGCCTTTCTTGCAAAACCAAAGCATCAATTTAGTCAATCCTAATGAGAAGACTATGTT
* * * * * * *
2174108 TACAGT-GCAAATCCTGTAAAGAATGGGGATTAGTAAGACTAATCATGTTTGCCTTATTTAAAAG
774 TATAGTACCAAATCCTGAAAAGAATGGGGATTTGAAAGACTAATCATGTTTGTCTTATTTAAGAG
* * * *
2174172 ACAAACTTTGATTCAATCAAAAACGGAGGAAAGAAAACCTTTTCTTATGACACCAAAGCGTTAAT
839 ACAAACTTTGATTCTATCAAAAACGGAGGAAAGAAAAACTTTTCTTAT-ACACCAAAGCATCAAT
* * * * *
2174237 GTCGGGCATCCTAACGAAAGGAATGTGCTTTTGGTT-CCAATCTTGA
903 GTCGTGTATCCTAATGAAGGGAATGTGCTTTTAGTTCCCAATCTTGA
* * * * * * * *
2174283 AAAGAATGGGGACTATTTCAAAAATCAAAGCTTGACTTATTTAATA-GATTAGCTTTGATTTTAA
1 AAAGAATGGGGACTGTTGCAAGAATCAATGCTTG-TTTTTTTAA-AGGATGAACTTTGATTTTAA
* * *
2174347 GGAAAATAGGGCAAAGAAAAGATTTTCATTCAAAAGAAAACCATCAATACCT-TTTATCCTAATG
64 GGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAACAAAACCATCAATA-TTATTTATCCTAATG
* * *
2174411 AGGAGAATGTGTTTTTAGTGCATAATCACAAAAT-AAGTGAAGATTATTCCTAGAACCCAAGTTT
128 AGGAGAATGTGTTTTTAGTGC-TAATCACAAAATGAA-TGAAGATTATTACTAGAATCCATGTTT
* * * * * *
2174475 GTCTCT-CTTAAGGCATGGGCTTAGACTTTACAAAGATTGGCGGGAAGAAAGCCTTTCTTGCAAA
191 GTCT-TACTTGAGGCATAGACTTAGACTTTACAAAAATTGGAGGGAAGAAAACCTTTCTTGCAAA
* * *
2174539 ACCAAAGCATCAATTTAGT-TAATCCTGA-TGAGAAGACTATGTTTATAGTACTAAATCCTGAAA
255 ACCAAAGCATCAATTTCGTCT-ATCCT-ATTGAGAAGACTATGTTTATAGTGCCAAATCCTGAAA
* * * * * * * *
2174602 AGAATGGGGATTTGAAAGACTTATTATGTTTGTCTTATTTAAGAGACATACTTTGATTCTATCAA
318 AGAATGGAGATTAGTAAGACTAATCATGTTTGCCTTATTTAAAAGACAAACTTTGATTCTATCAA
* * * ** *
2174667 AAACAGTGGAAAGAAAAACTTTTCTTACT-ACACCAAAGCATCAATGTCCTGTATCCT-ATTAAA
383 AAACGGAGGAAAGAAAACCTTTTCTTA-TGACACCAAAGCATCAATGTCGGGTATCCTAATGAAA
* * * * * * *
2174730 GGGAATGTGTTTTTAGTTCCTAATCTTGGAAAGAAAGGCGG-C-AGTTGCAAGAATCAATGCTTG
447 -GGAATGTGCTTTTAGTTCCCAATCTTGAAAAGAATGG-GGACTA-TTTCAAAAATCAAAGCTTG
* * * *
2174793 CCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAA
509 ACTTATTTAAGAGATGAGCTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAA
* * * *
2174858 GAAAGCCATCAATA-TTATTTATCCTAATGAGGAGAATGTGTTTTTAGTGTC-GAATGACAAAAT
574 GAAAACCATCAATACCT-TTTATCCTAATGAGGAGAATGTGTTTTTAGTG-CATAATCACAAAAT
* * * * **
2174921 AAATGAAGATTTTTACTAGAATCCATGTTTGTCT-TACTCGAGGCATAGACTTAGACTTTACAAA
637 AAGTGAAGATTATTACTAGAACCCAAGTTTGTCTCT-CTTAAGGCATAGACTTAGACTTTACAAA
* * * *
2174985 AATTGGAGGGAAGAAAACCTTTCTTGCAAAACCAAAGCATCAATTTCA-TCTATCCTATTGAGAA
701 AATTGGCGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATTT-AGTCAATCCTAATGAGAA
* * * * * *
2175049 GACTATGTTTATAGTGCCAAATCATGAAAAGAATAGGGATTGGTAAGACTAACCATGTTTGTCTT
765 GACTATGTTTATAGTACCAAATCCTGAAAAGAATGGGGATTTGAAAGACTAATCATGTTTGTCTT
* * * * *
2175114 ATTTAAGAGACAAACTTTGATTCTATCAAAATCGGAGGAAAGCAAACCTTTTCCTATAACACTAA
830 ATTTAAGAGACAAACTTTGATTCTATCAAAAACGGAGGAAAGAAAAACTTTTCTTAT-ACACCAA
* * ** * * * *
2175179 AGCGTCAATGTCGAGTATCGAAATGAA-AGACATGTGTTTTTTGTTTCCAATCTTGA
894 AGCATCAATGTCGTGTATCCTAATGAAGGGA-ATGTGCTTTTAGTTCCCAATCTTGA
* * * * * * *
2175235 AAAGAATGGGGACTGCTACAAGAATCAAAGCTTGTCTTATTTAAGGGACGAGCTTTGATTTTAAG
1 AAAGAATGGGGACTGTTGCAAGAATCAATGCTTGT-TTTTTTAAAGGATGAACTTTGATTTTAAG
* *
2175300 GAAAATAGGGTAAAGAAAAGATTTTCATGCAAAACAAAACCATCAATATCATTTATCCTAATGAG
65 GAAAATAGGGCAAAGAAAAGATTTTCATGCAAAACAAAACCATCAATATTATTTATCCTAATGAG
* * * * * *
2175365 AAGAATGTGTTTTTTGTACCTAATTACAAAATGAAAGAAGATTATTACTACAATCCATGTTTGTC
130 GAGAATGTGTTTTTAGT-GCTAATCACAAAATGAATGAAGATTATTACTAGAATCCATGTTTGTC
* * * *
2175430 TCACTTGAGGCATAGACTTAGACTTTACAAAAATTGGTGGGAAAGAAGA-CTTTCCTGCAAAACC
194 TTACTTGAGGCATAGACTTAGACTTTACAAAAATTGGAGGG-AAGAAAACCTTTCTTGCAAAACC
* * * *
2175494 AAATCATCAATTTCATCTATCCAATTGAGAAGACTATGTTTACAGTG-CAAATCCT-ATAAAGAA
258 AAAGCATCAATTTCGTCTATCCTATTGAGAAGACTATGTTTATAGTGCCAAATCCTGA-AAAGAA
*
2175557 TGGAGATTAGTAAGACTAATCATGTTTGCCTTATTTAAAAGACAAACATTGATTCTATCAAAAAC
322 TGGAGATTAGTAAGACTAATCATGTTTGCCTTATTTAAAAGACAAACTTTGATTCTATCAAAAAC
* * * *
2175622 GGAGGAAAGAAAACCTTTTCTTATGACACCAAAGCATTAATGTTGGGTATCCTAACGAAATGAAT
387 GGAGGAAAGAAAACCTTTTCTTATGACACCAAAGCATCAATGTCGGGTATCCTAATGAAAGGAAT
* *
2175687 GTGCTTTTAGTTCCTAATCTTGAAAAGAATGGGGACTATTTCAAAAATCAAAGTTTGACTTATTT
452 GTGCTTTTAGTTCCCAATCTTGAAAAGAATGGGGACTATTTCAAAAATCAAAGCTTGACTTATTT
* *
2175752 AAGAGATTAGCTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATTCAAAAGAAAACCA
517 AAGAGATGAGCTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCA
*
2175817 TCAATACCTTTTCTCCTAATGAGGAGAATGTGTTTTTAGTGCATAATCACAAAATAAGTGAAGAT
582 TCAATACCTTTTATCCTAATGAGGAGAATGTGTTTTTAGTGCATAATCACAAAATAAGTGAAGAT
* * * *
2175882 TATTCCTAGAACCCAAGTTTGTCTCTCTTAAGGCATGGGCTTAGACTTTACAAAGATTGGCGGGA
647 TATTACTAGAACCCAAGTTTGTCTCTCTTAAGGCATAGACTTAGACTTTACAAAAATTGGCGGGA
2175947 AGAAAGCCTTTCTTGCAAAACCAAAGCA-CAAATTTAGTCAATCCTAATGAGAAGACTATGTTTA
712 AGAAAGCCTTTCTTGCAAAACCAAAGCATC-AATTTAGTCAATCCTAATGAGAAGACTATGTTTA
* * * *
2176011 TAGTACCAAATCCTGAAAAGAATGGGGATTTGAAAGAGTTATTATGTTTGTCTTATTTAAGAGAT
776 TAGTACCAAATCCTGAAAAGAATGGGGATTTGAAAGACTAATCATGTTTGTCTTATTTAAGAGAC
* * * *
2176076 ATACTTTGATTCTATCAAAAACAGTGGAAAGAAAAACTTTTCTTACTATACCAAAGCATCAATGT
841 AAACTTTGATTCTATCAAAAACGGAGGAAAGAAAAACTTTTCTTA-TACACCAAAGCATCAATGT
*
2176141 CCTGTATCCTAATGAAGGGAATGTGCTTTTAGTTCCCAATCTTGA
905 CGTGTATCCTAATGAAGGGAATGTGCTTTTAGTTCCCAATCTTGA
* *
2176186 AAATAATGGCGG-CTGTTGCAAGAATCAATGCTTGTTTTTTTAAGGGATGAACTTTGATTTTAAG
1 AAAGAATGG-GGACTGTTGCAAGAATCAATGCTTGTTTTTTTAAAGGATGAACTTTGATTTTAAG
* * *
2176250 GAAAATTGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCGTCAATATTATTTATCCTAATGAG
65 GAAAATAGGGCAAAGAAAAGATTTTCATGCAAAACAAAACCATCAATATTATTTATCCTAATGAG
* *
2176315 GAGAATGTGTTTTTAGTGCTGAATCACAAAATTAATGAACATTATTACTAGAATCCATGTTTGTC
130 GAGAATGTGTTTTTAGTGCT-AATCACAAAATGAATGAAGATTATTACTAGAATCCATGTTTGTC
* *
2176380 TTACTCGAGGCATAGACTTAGACTTTTCAAAAATTGGAGGGAAGAAAACCTTTCTTGCAAAACCA
194 TTACTTGAGGCATAGACTTAGACTTTACAAAAATTGGAGGGAAGAAAACCTTTCTTGCAAAACCA
*
2176445 AAGCATCAATTTCGTCTATCCTATTGAGAAGACTATGTTTATAGTGCCAAATCATGAAAAGAATA
259 AAGCATCAATTTCGTCTATCCTATTGAGAAGACTATGTTTATAGTGCCAAATCCTGAAAAGAAT-
*
2176510 GG-GATTGGTAAG
323 GGAGATTAGTAAG
2176522 TGATGACAAC
Statistics
Matches: 2752, Mismatches: 371, Indels: 130
0.85 0.11 0.04
Matches are distributed among these distances:
948 12 0.00
949 597 0.22
950 569 0.21
951 880 0.32
952 457 0.17
953 237 0.09
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (949 bp):
AAAGAATGGGGACTGTTGCAAGAATCAATGCTTGTTTTTTTAAAGGATGAACTTTGATTTTAAGG
AAAATAGGGCAAAGAAAAGATTTTCATGCAAAACAAAACCATCAATATTATTTATCCTAATGAGG
AGAATGTGTTTTTAGTGCTAATCACAAAATGAATGAAGATTATTACTAGAATCCATGTTTGTCTT
ACTTGAGGCATAGACTTAGACTTTACAAAAATTGGAGGGAAGAAAACCTTTCTTGCAAAACCAAA
GCATCAATTTCGTCTATCCTATTGAGAAGACTATGTTTATAGTGCCAAATCCTGAAAAGAATGGA
GATTAGTAAGACTAATCATGTTTGCCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGAG
GAAAGAAAACCTTTTCTTATGACACCAAAGCATCAATGTCGGGTATCCTAATGAAAGGAATGTGC
TTTTAGTTCCCAATCTTGAAAAGAATGGGGACTATTTCAAAAATCAAAGCTTGACTTATTTAAGA
GATGAGCTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAA
TACCTTTTATCCTAATGAGGAGAATGTGTTTTTAGTGCATAATCACAAAATAAGTGAAGATTATT
ACTAGAACCCAAGTTTGTCTCTCTTAAGGCATAGACTTAGACTTTACAAAAATTGGCGGGAAGAA
AGCCTTTCTTGCAAAACCAAAGCATCAATTTAGTCAATCCTAATGAGAAGACTATGTTTATAGTA
CCAAATCCTGAAAAGAATGGGGATTTGAAAGACTAATCATGTTTGTCTTATTTAAGAGACAAACT
TTGATTCTATCAAAAACGGAGGAAAGAAAAACTTTTCTTATACACCAAAGCATCAATGTCGTGTA
TCCTAATGAAGGGAATGTGCTTTTAGTTCCCAATCTTGA
Found at i:2181537 original size:9 final size:9
Alignment explanation
Indices: 2181525--2181585 Score: 65
Period size: 9 Copynumber: 7.1 Consensus size: 9
2181515 CTCTCTCTAT
2181525 TATCTCTCC
1 TATCTCTCC
2181534 TATCTCTCC
1 TATCTCTCC
* *
2181543 T-CCTAT-C
1 TATCTCTCC
*
2181550 -ATCCCTCC
1 TATCTCTCC
*
2181558 TATCTCTAC
1 TATCTCTCC
2181567 TATCTCTCC
1 TATCTCTCC
2181576 TATCTCTCC
1 TATCTCTCC
2181585 T
1 T
2181586 CCTATCATCC
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
7 3 0.07
8 4 0.10
9 34 0.83
ACGTcount: A:0.13, C:0.44, G:0.00, T:0.43
Consensus pattern (9 bp):
TATCTCTCC
Found at i:2181545 original size:12 final size:12
Alignment explanation
Indices: 2181530--2181606 Score: 62
Period size: 12 Copynumber: 6.9 Consensus size: 12
2181520 TCTATTATCT
2181530 CTCCTATCTCTC
1 CTCCTATCTCTC
2181542 CTCCTATCATC-C
1 CTCCTATC-TCTC
2181554 CTCCTA--TCT-
1 CTCCTATCTCTC
*
2181563 CTACTA--TCT-
1 CTCCTATCTCTC
2181572 CTCCTATCTCTC
1 CTCCTATCTCTC
2181584 CTCCTATCATC-C
1 CTCCTATC-TCTC
*
2181596 CTCCTCTCTCT
1 CTCCTATCTCT
2181607 TCTTTCTCTT
Statistics
Matches: 55, Mismatches: 3, Indels: 14
0.76 0.04 0.19
Matches are distributed among these distances:
9 15 0.27
11 5 0.09
12 31 0.56
13 4 0.07
ACGTcount: A:0.12, C:0.48, G:0.00, T:0.40
Consensus pattern (12 bp):
CTCCTATCTCTC
Found at i:2181552 original size:42 final size:42
Alignment explanation
Indices: 2181497--2181615 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
2181487 TTCTTCTCTC
* *
2181497 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTATCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTATCT
*
2181539 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTATCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTATCT
* *
2181581 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
2181616 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.10, C:0.46, G:0.01, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTATCT
Found at i:2183532 original size:12 final size:11
Alignment explanation
Indices: 2183510--2183585 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
2183500 AGAGAAAGAA
*
2183510 GAGAGAGGAGG
1 GAGATAGGAGG
2183521 GATGATAGGAGG
1 GA-GATAGGAGG
*
2183533 AGAGACAGGA--
1 -GAGATAGGAGG
*
2183543 GAGATAGTA--
1 GAGATAGGAGG
2183552 GAGATAGGAGG
1 GAGATAGGAGG
2183563 GATGATAGGAGG
1 GA-GATAGGAGG
*
2183575 AGAGACAGGAG
1 -GAGATAGGAG
2183586 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:2183542 original size:24 final size:24
Alignment explanation
Indices: 2183509--2183594 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
2183499 AAGAGAAAGA
*
2183509 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
2183533 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
2183551 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
2183575 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
2183595 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:2183561 original size:42 final size:42
Alignment explanation
Indices: 2183500--2183618 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
2183490 TAGCCCTCAA
* *
2183500 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
2183542 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
2183584 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
2183619 GAGAGAAGAA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.43, C:0.03, G:0.46, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:2190934 original size:159 final size:155
Alignment explanation
Indices: 2190275--2198553 Score: 759
Period size: 159 Copynumber: 52.2 Consensus size: 155
2190265 TGTCAAAAGA
* * * * *
2190275 AAAGGTTTTCTTTCCTCCGA-TTTTGATATAATTAAAGTTTTTCTCTTAAATAAGACAAACACGA
1 AAAGGCTTTCTTTCCTCCAATTTTTG-TAAAATCAAAGTTTGTCTCTT-AATAAGACAAACACGA
* * * *
2190339 TTAGTCT-TACCAATCCCCATTCTTTTCAGGATTTGGCACTATAAACATAGTCTTCTCAATAGGA
64 TT-GT-TGTAACAATCCCCATTCTTTTCATGATTTGGCAC-AAAAACACAGTCTTCTCAATAGGA
*
2190403 TAGACGAAGTTGATGCTTTGGTTTTGCAAG
126 TAGACGAAATTGATGCTTTGGTTTTGCAAG
* * * * * * * **
2190433 AAAGTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATG-C-CTCAAGTGAGACAAACTTG
1 AAAGGCTTTCTTTCCTCCAATTTTTGTAAAATCAAAGT-T-TGTCTCTTAA-TAAGACAAAC-AC
* * * * * * *
2190496 GATT-TTGGTAAGAATCTTCC-TTCATTTT-GTGATTAGGTACTAAAAACACAATC-TCTTCATT
62 GATTGTT-GTAACAATC-CCCATTC-TTTTCATGATTTGGCAC-AAAAACACAGTCTTC-TCAAT
* * * * ** *
2190557 AGGATAAATGATATTGATGGTTTTCTTTTGCATG
122 AGGATAGACGAAATTGATGCTTTGGTTTTGCAAG
** * * * ** * * * *
2190591 AAAATCTTTTCTTTGCT-CTATTTTCCT-TAAAATCAAAGCTCATCCCTTAGATAAGGCAAGCTC
1 AAAGGC-TTTCTTTCCTCCAATTTT--TGTAAAATCAAAGTTTGTCTCTTA-ATAAGACAAACAC
* * * * * * ** *
2190654 TGATTCTTGTAACAATTCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTT-TCGTTCG
62 -GATTGTTGTAACAATCCCCATTCTTTTCATGATTTGGCA-CAAAAACACAGT-CTTCTCAATAG
** * * * * *
2190718 GATACTCGACACTAACGCTTTGG-TGT-CATAGG
124 GATAGACGAAATTGATGCTTTGGTTTTGCA-A-G
* * * *
2190750 AAAAGGTTTTCTTTCTTCCGA-TTTTGATAAAATAAAAGTTTGTCTCTTATATAAGACAAACACG
1 -AAAGGCTTTCTTTCCTCCAATTTTTG-TAAAATCAAAGTTTGTCTCTTA-ATAAGACAAACACG
* * *
2190814 ATTAGTTTTACCAATCCCCATTCTTTTCATGATTTGGCACAATAAACATAGTCTTCTCAATAGGA
63 ATT-GTTGTAACAATCCCCATTCTTTTCATGATTTGGCACAA-AAACACAGTCTTCTCAATAGGA
*
2190879 TAGACTAAATTGATGCTTTGGTTTTGCAAG
126 TAGACGAAATTGATGCTTTGGTTTTGCAAG
* * * * * * *
2190909 AAAGGCTTTCTTCCCTCCAATTTTTGTAAAGTCTAAGTCTATGCCTCGT-GTAAGACAAACATGG
1 AAAGGCTTTCTTTCCTCCAATTTTTGTAAAATCAAAGT-T-TGTCTCTTAATAAGACAAACA-CG
* * * ** * *
2190973 ATTCTAGTAATAATCTTCATTCATTTT-GTGATTTGGCACTAAAAACACA---TTCTCATTAGGA
63 ATTGTTGTAACAATCCCCATTC-TTTTCATGATTTGGCAC-AAAAACACAGTCTTCTCAATAGGA
** * ** *
2191034 TA-AATAATATTGATGGTTTTCTTTTGCATG
126 TAGACGAA-ATTGATGCTTTGGTTTTGCAAG
** * * ** * * * *
2191064 AAAATCTTCTCTTTGC-CCTATTTTCCT-TAAAATCAAAGTTCATCGCTTAAAAAAGGCAAGCAT
1 AAAGGCTT-TCTTTCCTCCAATTTT--TGTAAAATCAAAGTTTGTCTCTT-AATAAGACAAACA-
* * * * * * * * * * *
2191127 TGATTCTTGCAAC-AGCCGCCATTCTTTTCAGGATTGGGAACTAAAAAGACATTC-CCTTCATTA
61 CGATTGTTGTAACAATCC-CCATTCTTTTCATGATTTGGCAC-AAAAACACAGTCTTC-TCAATA
* * * * * * *
2191190 AGATACAAGACATTGATGCTTTGGTGTAGTAAG
123 GGATAGACGAAATTGATGCTTTGGTTTTGCAAG
** * * * * *
2191223 AAAAGTTTTTCTTTCCACC-GTTTTTGATAGAATCAAAGTATATCTCTTAAATAAGACAAACACG
1 -AAAGGCTTTCTTTCCTCCAATTTTTG-TAAAATCAAAGTTTGTCTCTT-AATAAGACAAACACG
* * * * * * *
2191287 ATAAGTCTTTCA-AATCCCCATTCTTTTCAAGATTTGGCACTATAAACATAGTCTTCTCATTAGG
63 AT-TGT-TGTAACAATCCCCATTCTTTTCATGATTTGGCAC-AAAAACACAGTCTTCTCAATAGG
* *
2191351 ATTA-ACTAAATTGATGCTTTGGTTTTGCAAA
125 A-TAGACGAAATTGATGCTTTGGTTTTGCAAG
* * * * * *** * *
2191382 AAAGGCTTTCTTCCCGCCAATCTTTGTAAAGTCTAAGCCCACG-C-CTTAAGTGAGACAAACATG
1 AAAGGCTTTCTTTCCTCCAATTTTTGTAAAATCAAAG--TTTGTCTCTTAA-TAAGACAAACA-C
* * * ** * * * * * *
2191445 GATTCTAGTAATAATCTTCACTTATTTT-GTAATTAT-GCACTAAAAACACATTCTCCTCATTAG
62 GATTGTTGTAACAATCCCCA-TTCTTTTCATGATT-TGGCAC-AAAAACACAGTCTTCTCAATAG
* * ** * ** *
2191508 GATAAAAGGTATTGATGGTTTTCTTTTGCATG
124 GATAGACGAAATTGATGCTTTGGTTTTGCAAG
** * * * * ** * * * *
2191540 AAAATCATTTCTTTGC-CCTATTTTCCT-TAAAATCAATGCTCATCCCTTAAATAAGGCAAGCTT
1 AAAGGC-TTTCTTTCCTCCAATTTT--TGTAAAATCAAAGTTTGTCTCTT-AATAAGACAAAC-A
* * * * * * * * **
2191603 TGATTCTTGTAACAGA-CCCCGTTCTTTTCA-AAATTGTGAACCAAAAACATATTCCTT-TCGTT
61 CGATTGTTGTAACA-ATCCCCATTCTTTTCATGATTTG-GCA-CAAAAACACAGT-CTTCTCAAT
** * * * *
2191665 AGGATACCCGACATTAACGCTTTGG-TGT-CATAGG
122 AGGATAGACGAAATTGATGCTTTGGTTTTGCA-A-G
* * * ** *
2191699 AAAAGGTTTTCTTTCCTCC-GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATTTGACAAACATG
1 -AAAGGCTTTCTTTCCTCCAATTTTTG-TAAAATCAAAGTTTGTCTCTT-AATAAGACAAACACG
* * * *
2191763 ATTAGTCT-T-ACTAATCCTCATTCTTTTCAGGATTTGGCACTATAAACATAGTCTTCTCAATAG
63 ATT-GT-TGTAAC-AATCCCCATTCTTTTCATGATTTGGCAC-AAAAACACAGTCTTCTCAATAG
* *
2191826 GATAGACGAAATTGATGCTTTGGCTTTGTAAG
124 GATAGACGAAATTGATGCTTTGGTTTTGCAAG
* * * * * * *
2191858 AAAGTCTTTCTTCCCACCAATTTTTGGTAAAGTCTAAGTCTATG-C-CTCAAGAGAGACAAACAT
1 AAAGGCTTTCTTTCCTCCAATTTTT-GTAAAATCAAAGT-T-TGTCTCTTAATA-AGACAAACA-
* * * * ** * * * * * **
2191921 GGATTCTAGTAATAATCTTCATTCATTTT-GTGATTAGGC-CTTAAAAACGCATTCTCCTCTTTA
61 CGATTGTTGTAACAATCCCCATTC-TTTTCATGATTTGGCAC--AAAAACACAGTCTTCTCAATA
* * * * ** * *
2191984 GGATAAATGATATTGATGGTTTTCTTTAGCATG
123 GGATAGACGAAATTGATGCTTTGGTTTTGCAAG
** * * * ** * * ** *
2192017 AAAATCTTTTCTTTGC-CCTATTTTCCT-TAAAATCAAAGCTCATCCCTTAAATAAGGCAGGCTT
1 AAAGGC-TTTCTTTCCTCCAATTTT--TGTAAAATCAAAGTTTGTCTCTT-AATAAGACAAAC-A
* * * * * * * **
2192080 TGATTCTTGTAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTT-TCGTTAG
61 CGATTGTTGTAACAATCCCCATTCTTTTCATGATTTGGCA-CAAAAACACAGT-CTTCTCAATAG
* * * * ***
2192144 GATA-CCTGACATTAATGCTTTGGTGTCAAAAG
124 GATAGAC-GAAATTGATGCTTTGGTTTTGCAAG
* * * *
2192176 ATAAGGTTTTCTTTCCT-CGATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG
1 A-AAGGCTTTCTTTCCTCCAATTTTTG-TAAAATCAAAGTTTGTCTCTT-AATAAGACAAACACG
* * * *
2192240 ATTAGTCT-TACCCATCCCCATTCTTTTCAGGATTTGGCACTATAAACACAGTCTTCTCAATAGG
63 ATT-GT-TGTAACAATCCCCATTCTTTTCATGATTTGGCAC-AAAAACACAGTCTTCTCAATAGG
*
2192304 AT-GACGAAATTGATGCTTTGGTTTTGAAAG
125 ATAGACGAAATTGATGCTTTGGTTTTGCAAG
* * * * * * * * * *
2192334 AAAGGTTTTCTTCCCAT-CAATTTTTGTAAAGTCTAAGTCTGGGC-CTCAGGTGAGACAAACATG
1 AAAGGCTTTCTTTCC-TCCAATTTTTGTAAAATCAAAGT-TTGTCTCTTA-ATAAGACAAACA-C
* * * * ** * ** * *
2192397 GATTCTAGAAATAATCTTCATTCATTTT-GTGATTCAGCACTAAAAACACATTCTCCTCAATAGG
62 GATTGTTGTAACAATCCCCATTC-TTTTCATGATTTGGCAC-AAAAACACAGTCTTCTCAATAGG
** * ** * *
2192461 ATA-AATAATATTGATGGTTTTCTTTTGTATG
125 ATAGACGAA-ATTGATGCTTTGGTTTTGCAAG
** * * ** * ** * * *
2192492 AAAATCTTTTCTTTGC-CCTATTTTCCTTAAATCAAAGTTCATCCCATAAATAA-AGCAAGCACT
1 AAAGGC-TTTCTTTCCTCCAATTTTTGTAAAATCAAAGTTTGTCTC-TTAATAAGA-CAAACAC-
* * * * * * * * * *
2192555 GATTCTTGTAACAGTCTCTATTTTTTTTCAAGATTTGGGAACCAAAAACACATTC-CCTTCATTA
62 GATTGTTGTAACAATCCCCA-TTCTTTTCATGATTT-GGCA-CAAAAACACAGTCTTC-TCAATA
* * * * ** *
2192619 GTATACATGACATTGACACTTTGGTGTTGCAAG
123 GGATAGACGAAATTGATGCTTTGGTTTTGCAAG
* ** * * *
2192652 AAAAGG-TTTCCTTCC-CACCGTTTTTGATAGAATCAAAGTTT-TCTTTTAAATAAGACAAACAT
1 -AAAGGCTTTCTTTCCTC-CAATTTTTG-TAAAATCAAAGTTTGTCTCTT-AATAAGACAAACAC
* * * * * * * *
2192714 GAGTAGTCT-T-GCTAATCCCTAATTGTTTTCAGGATTTGGCACTATAAACATAGTCTTCTCATT
62 GA-TTGT-TGTAAC-AATCCC-CATTCTTTTCATGATTTGGCAC-AAAAACACAGTCTTCTCAAT
* * *
2192777 AGGATAGGCGAAATTGATGCTTTGGATTCGCAAG
122 AGGATAGACGAAATTGATGCTTTGGTTTTGCAAG
* * * * * * * * * *
2192811 AAAGTCTTTCTTCCCACTAATTTTTTTAAAGTCTAAGTCTATG-C-CTCAAGTGAGACAAACTCG
1 AAAGGCTTTCTTTCCTCCAATTTTTGTAAAATCAAAGT-T-TGTCTCTTAA-TAAGACAAACAC-
* ** * * * *
2192874 GATT-TTAGTAATAATCTTCATTCATTTT-GTGATTAGGCACTAAAAACACATTCTCCTCAATAG
62 GATTGTT-GTAACAATCCCCATTC-TTTTCATGATTTGGCAC-AAAAACACAGTCTTCTCAATAG
* * ** * * ** *
2192937 GATAAAAGGTATTAATGGTTTTATTTTGCATG
124 GATAGACGAAATTGATGCTTTGGTTTTGCAAG
** * * * ** * * * *
2192969 AAAATCTTTTCTTTTC-CCTATTTTCCT-TAAAATCAAAGCTCATCCCTTAAATAAGGCAAGCTT
1 AAAGGC-TTTCTTTCCTCCAATTTT--TGTAAAATCAAAGTTTGTCTCTT-AATAAGACAAAC-A
* * * * * * * * * **
2193032 TGATTCTTGTAACAGTCCCCGTTCTTTTCAAGAGTGGGAACCAAAAACACATTCCTT-TCGTTAG
61 CGATTGTTGTAACAATCCCCATTCTTTTCATGATTTGGCA-CAAAAACACAGT-CTTCTCAATAG
** * * *
2193096 GATACCCGATATTAATGCTTTGG-TGT-CAAAGG
124 GATAGACGAAATTGATGCTTTGGTTTTGC-AA-G
* * * * *
2193128 AAAAGGTTTTCTTTCCTCC-GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAACATG
1 -AAAGGCTTTCTTTCCTCCAATTTTTG-TAAAATCAAAGTTTGTCTCTT-AATAAGACAAACACG
* * * * *
2193192 ATTAGTCT-T-ACTAATCCTCATTCTTTTTAGGATTTGGCACTATAAACATAGTCTTCTCAATAG
63 ATT-GT-TGTAAC-AATCCCCATTCTTTTCATGATTTGGCAC-AAAAACACAGTCTTCTCAATAG
* *
2193255 GATAGACGAAATTGATGCTTTGGCTTTGTAAG
124 GATAGACGAAATTGATGCTTTGGTTTTGCAAG
* * * * * * *
2193287 AAAGTCTTTCTTCCCACCAATTTTTGGTAAAGTCTAAGTCTATG-C-CTCAAGAGAGACAAACAT
1 AAAGGCTTTCTTTCCTCCAATTTTT-GTAAAATCAAAGT-T-TGTCTCTTAATA-AGACAAACA-
* * * * * ** * * * * * *
2193350 GGATTCTAGTAATAAACTTCATTCATTTT-GTGATTAGGCCCTAAAAACACATTCTCCTCATTAG
61 CGATTGTTGTAACAATCCCCATTC-TTTTCATGATTTGGCAC-AAAAACACAGTCTTCTCAATAG
* * * * ** * *
2193414 GATAAATGATATTGATGGTTTTCTTTAGCATG
124 GATAGACGAAATTGATGCTTTGGTTTTGCAAG
** * * * * ** * * * *
2193446 AAAATCTTTTCTTTGC-CCTATTTTCCT-TAAAAACGAAGTTCATCCCTTAAAAAAGGCAAGCAT
1 AAAGGC-TTTCTTTCCTCCAATTTT--TGTAAAATCAAAGTTTGTCTCTT-AATAAGACAAACA-
* * * * * * * * * * *
2193509 TGATTCTTGCAACAGTCTCCATTCTTTTCAGGATTGGGAACTAAAAACACATTC-CCTTCATTAG
61 CGATTGTTGTAACAATCCCCATTCTTTTCATGATTTGGCAC-AAAAACACAGTCTTC-TCAATAG
* * * * * * *
2193573 GTTACAAGACATTGATGCTTTGGTATAGTAAG
124 GATAGACGAAATTGATGCTTTGGTTTTGCAAG
** * * ** * * *
2193605 AAAAGTTTTTCTTTCCACC-GTTTTTGATAGAAA-CAAAGTACGCCTCCTAAATAAGACAAATAC
1 -AAAGGCTTTCTTTCCTCCAATTTTTG-TA-AAATCAAAGTTTGTCT-CTTAATAAGACAAACAC
* * * * * * * ** *
2193668 GATAAGTCT-T-TCTAATCCCCATTCTTTTCAGGATTTGGCATTATAAATATAGGATTCTCATTA
62 GAT-TGT-TGTAAC-AATCCCCATTCTTTTCATGATTTGGCA-CAAAAACACAGTCTTCTCAATA
* * *
2193731 GGATTGACTAAATTGATGCTTTGTTTTTGCAAG
123 GGATAGACGAAATTGATGCTTTGGTTTTGCAAG
* * * * * * ** * * *
2193764 AAAGGCTTTCTTCCCACCAATCTTCGTAAAGTCTAAGCCCATGACTC--AAGTGAGACAAACATG
1 AAAGGCTTTCTTTCCTCCAATTTTTGTAAAATCAAAG--TTTGTCTCTTAA-TAAGACAAACA-C
* * * ** * * * ** *
2193827 GATTCTAGTAATAATCTTC-TCTCATTTT-GTGATTAGGCACAAAAAACACATTCACCTCATTAG
62 GATTGTTGTAACAATCCCCAT-TC-TTTTCATGATTTGGCAC-AAAAACACAGTCTTCTCAATAG
* * ** * ** *
2193890 GATAAAAGGTATTGATGGTTTTCTTTTGCATG
124 GATAGACGAAATTGATGCTTTGGTTTTGCAAG
** * * * ** * * * *
2193922 AAATTCTTTTCTTTGC-CCTATTTTCCT-TAAAATCAAAGCTCATCCCTTAAATAAGGCAAGCTT
1 AAAGGC-TTTCTTTCCTCCAATTTT--TGTAAAATCAAAGTTTGTCTCTT-AATAAGACAAAC-A
* * * * * * * **
2193985 TGATTCTTGTAACAGA-CCCCGTTCTTTTCAAGATTGGGAACCAAAAACACATTTCTTCT-GTTA
61 CGATTGTTGTAACA-ATCCCCATTCTTTTCATGATTTGGCA-CAAAAACACA-GTCTTCTCAATA
** * * * *
2194048 GGATACCCGACATTAACGCTTTGG-TGT-CATAGG
123 GGATAGACGAAATTGATGCTTTGGTTTTGCA-A-G
* * * * *
2194081 AAAAGGTTTTCTTTCCTCC-ATTTTTGATAGAGTCAAAGTTTGTCTATTAAATAAGACAAACATG
1 -AAAGGCTTTCTTTCCTCCAATTTTTG-TAAAATCAAAGTTTGTCTCTT-AATAAGACAAACACG
* * * * * * * *
2194145 ATTAGTT-TTACTAATCCCCACTCTTTACACGATTTGGCACTATAAACATAGTCTTCTTAACAGG
63 ATT-GTTGTAAC-AATCCCCATTCTTTTCATGATTTGGCAC-AAAAACACAGTCTTCTCAATAGG
*
2194209 ATTGACGAAATTGATGCTTTGGTTTTGCAAG
125 ATAGACGAAATTGATGCTTTGGTTTTGCAAG
* * * * * * * * *
2194240 AATGCCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGTCTC--AAGTGAGACAAATATG
1 AAAGGCTTTCTTTCCTCCAATTTTTGTAAAATCAAAGT-T-TGTCTCTTAA-TAAGACAAACA-C
*** * ** *** * * * * *
2194303 GATTCCGGCAGTAATCTTTATTCATTTT-GTGATTAGGCACTAAAAACACATTCTCCTCATTAGG
62 GATTGTTGTAACAATCCCCATTC-TTTTCATGATTTGGCAC-AAAAACACAGTCTTCTCAATAGG
* * * * * ** **
2194367 ATAAATGATATTGTTGGTTTTCTTTTGCTTG
125 ATAGACGAAATTGATGCTTTGGTTTTGCAAG
** ** * * ** * * * * *
2194398 AAAATCTTTTCTTTATTGC-ATTTTCCT-TAAAATCAAAGCTCATCCCGTAAATAAGGCAAGCTT
1 AAAGGC-TTTCTTTCCTCCAATTTT--TGTAAAATCAAAGTTTGTCTC-TTAATAAGACAAAC-A
* ** * * * * * * * * *
2194461 TGATTCATGTAATAGTCCCTATTCTTTTCAAGATTGGGAACCAAAA-ACATTCCTT-TCATTAGG
61 CGATTGTTGTAACAATCCCCATTCTTTTCATGATTTGGCACAAAAACACAGT-CTTCTCAATAGG
* * * * *
2194524 ATA-CCCAACATTAACGCTTTGG-TGT-CATAGG
125 ATAGACGAA-ATTGATGCTTTGGTTTTGCA-A-G
* ** * *
2194555 AAAAGGTTTTCTTTCC-CCTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG
1 -AAAGGCTTTCTTTCCTCCAATTTTTG-TAAAATCAAAGTTTGTCTCTT-AATAAGACAAACACG
* * * * * * *
2194619 ATTAGTCT-T-ACTAATCCTCATTCTTTTCAGGATTTGGCACTATAAACATAGTCTTCTTATTTG
63 ATT-GT-TGTAAC-AATCCCCATTCTTTTCATGATTTGGCAC-AAAAACACAGTCTTCTCAATAG
* * *
2194682 GATAGGCGAAATTGATGCTTTGGATTCGCAAG
124 GATAGACGAAATTGATGCTTTGGTTTTGCAAG
* * * * * * * * ** *
2194714 AAAGTCTTTCATCCCACTAATTTTTGTAAAGTCTAAGTCTATG-C-CTCAAGGGAGACAAACATG
1 AAAGGCTTTCTTTCCTCCAATTTTTGTAAAATCAAAGT-T-TGTCTCTTAA-TAAGACAAACA-C
* * * ** * ** * * *
2194777 GATTCTAT-TGATAATCTTCATTCATTTT-GTGATTAAGCACTAAAAACACAATCTCCTCATTAG
62 GATTGT-TGTAACAATCCCCATTC-TTTTCATGATTTGGCAC-AAAAACACAGTCTTCTCAATAG
* * * * ** *
2194840 GATAAAAGATATTGATGGTTTTCTTTTGCATG
124 GATAGACGAAATTGATGCTTTGGTTTTGCAAG
** * * * ** * * ** *
2194872 AAAATCTTTTCTTTGC-CCTATTTTCCT-TAAAATCAAAGCTCATCCCTTAAATAAGGCACTCTT
1 AAAGGC-TTTCTTTCCTCCAATTTT--TGTAAAATCAAAGTTTGTCTCTT-AATAAGACAAAC-A
* ** * * * * * * * * **
2194935 TGATTCATGTAATAGTCCCTATTCTTTTCAAGATTGGGAACCAAAAACATATTCCTT-TCGCTAG
61 CGATTGTTGTAACAATCCCCATTCTTTTCATGATTTGGCA-CAAAAACACAGT-CTTCTCAATAG
** * * * *
2194999 GATACCCGACATTAACGCTTTGG-TGT-CATAGG
124 GATAGACGAAATTGATGCTTTGGTTTTGCA-A-G
* ** * * *
2195031 AAAAGGTTTTCTTTCCT-CTGTTTTTGATAGAATCAAAGTATGTCTCTTAAATAAGACAAACATG
1 -AAAGGCTTTCTTTCCTCCAATTTTTG-TAAAATCAAAGTTTGTCTCTT-AATAAGACAAACACG
* * * *
2195095 ATTAGTCT-T-ACTAATCCTCATTCTTTTCAGGATTTGGCACTACAAACATAGTCTTCTCAATAG
63 ATT-GT-TGTAAC-AATCCCCATTCTTTTCATGATTTGGCAC-AAAAACACAGTCTTCTCAATAG
2195158 GATAGACGAAATTGATGCTTTGGTTTTGCAAG
124 GATAGACGAAATTGATGCTTTGGTTTTGCAAG
* * * * * * * **
2195190 AAAGTCTTTCTTCCCACAAATTTTTTGTAAAGTCTAAGTATATG-C-CTCAAGGGAGACAAACAT
1 AAAGGCTTTCTTTCCTCCAA-TTTTTGTAAAATCAAAGT-T-TGTCTCTTAA-TAAGACAAACA-
* * * * ** * ** * * *
2195253 GGATTCTAT-TGATAATCTTCATTCATTTT-GTGATTAAGCACTAAAAACACAATCTCCTCATTA
61 CGATTGT-TGTAACAATCCCCATTC-TTTTCATGATTTGGCAC-AAAAACACAGTCTTCTCAATA
* * * * ** *
2195316 GGATAAAAGATATTGATGGTTTTCTTTTGCATG
123 GGATAGACGAAATTGATGCTTTGGTTTTGCAAG
** * * * ** * * * *
2195349 AAAATCTTTTCTTTGC-CCTATTTTCCT-TAAAATCAAAGCTCATCCCTTAAATAAGGCAAGCTT
1 AAAGGC-TTTCTTTCCTCCAATTTT--TGTAAAATCAAAGTTTGTCTCTT-AATAAGACAAAC-A
* ** * * * * * * * * **
2195412 TGATTCATGTAATAGTCCCTATTCTTTTCAAGATTGGGAACCAAAAACATATTCCTT-TCGTTAG
61 CGATTGTTGTAACAATCCCCATTCTTTTCATGATTTGGCA-CAAAAACACAGT-CTTCTCAATAG
* * * * * *
2195476 GATA-CCCAACATTAACGTTTTGG-TGT-CATAGG
124 GATAGACGAA-ATTGATGCTTTGGTTTTGCA-A-G
* ** * *
2195508 AAAAGGTTTTCTTTCCT-CTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG
1 -AAAGGCTTTCTTTCCTCCAATTTTTG-TAAAATCAAAGTTTGTCTCTT-AATAAGACAAACACG
* * * * *
2195572 ATTAGTCT-T-ACTAATCCTCATTCTTTTCAGGATTTGGCACTACAAACATAGTCTTCTCAAGAG
63 ATT-GT-TGTAAC-AATCCCCATTCTTTTCATGATTTGGCAC-AAAAACACAGTCTTCTCAATAG
*
2195635 GATAGGCGAAATTGATGCTTTGGTTTTGCAAG
124 GATAGACGAAATTGATGCTTTGGTTTTGCAAG
* * * * * * * *
2195667 AAAGTCTTTCTTCCCACCAATTTTTTGTAAAGTCTAAGTCTATG-C-CTCAAGTGAGACAAACTT
1 AAAGGCTTTCTTTCCTCCAA-TTTTTGTAAAATCAAAGT-T-TGTCTCTTAA-TAAGACAAAC-A
* * * * ** * * * * * * *
2195730 GGATTCTGGTAAGAATCTTCATTAATTTT-GTGATTAGGTACTAAAAACACATTCTCCTCATTAG
61 CGATTGTTGTAACAATCCCCATT-CTTTTCATGATTTGGCAC-AAAAACACAGTCTTCTCAATAG
* * * * * ** *
2195794 GATAAATGATATTTATGGTTTTCTTTTGCATG
124 GATAGACGAAATTGATGCTTTGGTTTTGCAAG
** * * ** * * *
2195826 AAAATCTTTTCTTTACC-GC-ATTTTCCT-TAAAATCAAAGCTCATCCCTTAAATAAGGCACACT
1 AAAGGC-TTTCTTT-CCTCCAATTTT--TGTAAAATCAAAGTTTGTCTCTT-AATAAGACAAAC-
** ** * * * * * * * * **
2195888 TTGATTCATGTAATAGTCCCTATTCTTTTCAAGATTGGGAACCAAAAACATATTCCTT-TCGCTA
60 ACGATTGTTGTAACAATCCCCATTCTTTTCATGATTTGGCA-CAAAAACACAGT-CTTCTCAATA
** * * * *
2195952 GGATACTCGACATTAACGCTTTGG-TGT-CATAGG
123 GGATAGACGAAATTGATGCTTTGGTTTTGCA-A-G
* ** * * * *
2195985 AAAAGGTTTTCTTTCCT-CTGTTTTTGATAGAATCAAAGTATGTCTCTTAAATAAAACAAACATG
1 -AAAGGCTTTCTTTCCTCCAATTTTTG-TAAAATCAAAGTTTGTCTCTT-AATAAGACAAACACG
* * * *
2196049 ATTAGTCT-T-ACTAATCCTCATTCTTTTCAGGATTTGGCACTACAAACATAGTCTTCTCAATAG
63 ATT-GT-TGTAAC-AATCCCCATTCTTTTCATGATTTGGCAC-AAAAACACAGTCTTCTCAATAG
*
2196112 GATAGATGAAATTGATGCTTTGGTTTTGCAAG
124 GATAGACGAAATTGATGCTTTGGTTTTGCAAG
* * * * * * *
2196144 AAAGTCTTTCTTTCCACAAATTTTTTGTAAAGTCTAAGTATATG-C-CTCAAGAGAGACAAACAT
1 AAAGGCTTTCTTTCCTCCAA-TTTTTGTAAAATCAAAGT-T-TGTCTCTTAATA-AGACAAACA-
* * * * ** * ** * * *
2196207 GGATTCTAT-TGATAATCTTCATTCATTTT-GTGATTAAGCACTAAAAACACAATCTCCTCATTA
61 CGATTGT-TGTAACAATCCCCATTC-TTTTCATGATTTGGCAC-AAAAACACAGTCTTCTCAATA
* * * * ** *
2196270 GGATAAAAGATATTGATGGTTTTCTTTTGCATG
123 GGATAGACGAAATTGATGCTTTGGTTTTGCAAG
** * * * ** * * ** *
2196303 AAAATCTTTTCTTTGC-CCTATTTTCCT-TAAAATCAAAGCTCATCCCTTAAATAAGGCAGGCTT
1 AAAGGC-TTTCTTTCCTCCAATTTT--TGTAAAATCAAAGTTTGTCTCTT-AATAAGACAAAC-A
* * * * * * * *
2196366 TGATTCTTGTAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAAACACATTCCTT-TCATTA
61 CGATTGTTGTAACAATCCCCATTCTTTTCATGATTTGGCA-C-AAAAACACAGT-CTTCTCAATA
** ** * * * * ***
2196430 AAATACCCGACATTAACGCTTTGGTGTCAAAAG
123 GGATAGACGAAATTGATGCTTTGGTTTTGCAAG
* * * *
2196463 AAAAGGTTTTCATTCCTCC-ATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG
1 -AAAGGCTTTCTTTCCTCCAATTTTTG-TAAAATCAAAGTTTGTCTCTT-AATAAGACAAACACG
* * * * * * * *
2196527 ATTAATCT-TACCAATCCCTATTCTTTTCAGGTTTTGGCACTATAAACACAATCTTCTTAATAGG
63 ATT-GT-TGTAACAATCCCCATTCTTTTCATGATTTGGCAC-AAAAACACAGTCTTCTCAATAGG
2196591 AT-GACGAAATTGATGCTTTGGTTTTGCAAG
125 ATAGACGAAATTGATGCTTTGGTTTTGCAAG
* * * ** * * * * * *
2196621 AAAGGTTTTCTTCCCAT-CAATTTTCGTAAGGTCTAAGTCTGGGC-CTCAAGTGAGACAAACATG
1 AAAGGCTTTCTTTCC-TCCAATTTTTGTAAAATCAAAGT-TTGTCTCTTAA-TAAGACAAACA-C
* ** * * * * *
2196684 GATT-TTAGTAATAATCTTCATTCATTTT-GTGATTCGGCACTAAAAACACATTCTCCTCATTAG
62 GATTGTT-GTAACAATCCCCATTC-TTTTCATGATTTGGCAC-AAAAACACAGTCTTCTCAATAG
* * ** * ** * *
2196747 GATAAAAGGTATTGATGGTTTTCTTTTACATG
124 GATAGACGAAATTGATGCTTTGGTTTTGCAAG
** * * * ** * * * *
2196779 AAAATCTTTTCTTTGC-CCTATTTTCCT-TAAAATCAAAGCTCATCCCTTAAATAAGGCAAGCTT
1 AAAGGC-TTTCTTTCCTCCAATTTT--TGTAAAATCAAAGTTTGTCTCTT-AATAAGACAAAC-A
* * * * * * * **
2196842 TGATTCTTGTAAC-ATACCCCGTTCTTTTCAAGATTGGGAACCAAAAACACAATTCTTC-CGTTA
61 CGATTGTTGTAACAAT-CCCCATTCTTTTCATGATTTGGCA-CAAAAACAC-AGTCTTCTCAATA
** * * * *
2196905 GGATACCCGACATTAATGCCTTGG-TGT-CATAGG
123 GGATAGACGAAATTGATGCTTTGGTTTTGCA-A-G
* ** * * * * *
2196938 AAAAGGTTTTCTTTCCT-CTGTTTTTAATAGAGTCAAAGTTTGTCTATTAAATAAGACAAACATG
1 -AAAGGCTTTCTTTCCTCCAATTTTT-GTAAAATCAAAGTTTGTCTCTT-AATAAGACAAACACG
* * * * * * * *
2197002 ATTAGTT-TTACTAATCCCCACTCTTTACAGGATTTGGCACTATAAACATAGTCTTCTTAACAGG
63 ATT-GTTGTAAC-AATCCCCATTCTTTTCATGATTTGGCAC-AAAAACACAGTCTTCTCAATAGG
* *
2197066 ATTGACGAAATTGATGCTTTGGTTTCGCAAG
125 ATAGACGAAATTGATGCTTTGGTTTTGCAAG
* * * * * * * * *
2197097 AATGCCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGTCTC--AAGTGAGACAAATATG
1 AAAGGCTTTCTTTCCTCCAATTTTTGTAAAATCAAAGT-T-TGTCTCTTAA-TAAGACAAACA-C
*** * ** *** * * * * *
2197160 GATTCCAGCAGTAATCTTTATTCATTTT-GTGATTAGGCACTAAAAACACATTCTCCTCATTAGG
62 GATTGTTGTAACAATCCCCATTC-TTTTCATGATTTGGCAC-AAAAACACAGTCTTCTCAATAGG
* * * * * ** *
2197224 ATAAATGATATTGTTGGTTTTCTTTTGCATG
125 ATAGACGAAATTGATGCTTTGGTTTTGCAAG
** * * ** * * *
2197255 AAAATCTTTTCTTT-ATCGC-ATTTTCCT-TAAAATCAAAGCTCATCCCTTAAATAAGGCAAGCT
1 AAAGGC-TTTCTTTCCTC-CAATTTT--TGTAAAATCAAAGTTTGTCTCTT-AATAAGACAAAC-
** ** * * * * * * * * *
2197317 TTGATTCATGTAATAGTCCCTATTCTTTTCAAGATTGGGAACCAAAAACATATTCCTT-T-AGTT
60 ACGATTGTTGTAACAATCCCCATTCTTTTCATGATTTGGCA-CAAAAACACAGT-CTTCTCA-AT
* * * * *
2197380 AGGATA-CCCAACATTAACGCTTTGG-TGT-CATAGG
122 AGGATAGACGAA-ATTGATGCTTTGGTTTTGCA-A-G
* *** * * * *
2197414 AAAAGGTTTTCTTTCCTCTGTTTTTTATAGAATCAAAGTTTGTCTGTTAAATAAGACAAACATGA
1 -AAAGGCTTTCTTTCCTCCAATTTTTGTAAAATCAAAGTTTGTCTCTT-AATAAGACAAACACGA
* * * * *
2197479 TTAGTCT-T-ACTAATCCTCATTCTTTTCAGGATTTGGCACTACAAACATAGTCTTCTCAAGAGG
64 TT-GT-TGTAAC-AATCCCCATTCTTTTCATGATTTGGCAC-AAAAACACAGTCTTCTCAATAGG
* *
2197542 ATAGGCGAAATTGATGCTTTGATTTTGCAAG
125 ATAGACGAAATTGATGCTTTGGTTTTGCAAG
* * * * * **
2197573 AAAGTCTTTC-TTCTCACCAATTTTTTGTAAAGTCTAAGTCTATG-C-CTCAAGGGAGACAAACA
1 AAAGGCTTTCTTTC-CTCCAA-TTTTTGTAAAATCAAAGT-T-TGTCTCTTAA-TAAGACAAACA
* * * * ** * ** * *
2197635 TGGATTCTAGTAATAATCTTCATTCATTTT-TTGATTAAGCACTAAAAACACATTCTCCTC-ATC
61 -CGATTGTTGTAACAATCCCCATTC-TTTTCATGATTTGGCAC-AAAAACACAGTCTTCTCAAT-
* * * ** * ** * *
2197698 AAGATAAAAGGTATTGATGGTTTTCTTTTACATG
122 AGGATAGACGAAATTGATGCTTTGGTTTTGCAAG
** * * * ** * * * *
2197732 AAAATCTTTTCTTTGC-CCTATTTTCCT-TAAAATCAAAGCTCATCCCTTAAATAAGGCAAGCTT
1 AAAGGC-TTTCTTTCCTCCAATTTT--TGTAAAATCAAAGTTTGTCTCTT-AATAAGACAAAC-A
* * * * * * * * *
2197795 TGATTCTTGTAACAGA-CCCCGTTCTTTTCAAGATTGGGAACCCAAAACACAATTCTTC-CATTA
61 CGATTGTTGTAACA-ATCCCCATTCTTTTCATGATTTGGCA-CAAAAACAC-AGTCTTCTCAATA
* * * * *
2197858 GGATA-CCTGACATTAATGCGTTGG-TGT-CATAGG
123 GGATAGAC-GAAATTGATGCTTTGGTTTTGCA-A-G
* * * * *
2197891 AAAAGGTTTTCTTTCCTCC-GTTTTTGATAGAATCATAGTTTGTCTCTTAAATAAGACAAACATG
1 -AAAGGCTTTCTTTCCTCCAATTTTTG-TAAAATCAAAGTTTGTCTCTT-AATAAGACAAACACG
* * * * **
2197955 ATTAGTTAT-ACTAATCCCCATTCTTTACAGGATTTGGCACTATAAACGTAGTCTTCTCAATAGG
63 ATT-GTTGTAAC-AATCCCCATTCTTTTCATGATTTGGCAC-AAAAACACAGTCTTCTCAATAGG
*
2198019 ATTGACGAAATTGATGCTTTGGTTTTGCAAG
125 ATAGACGAAATTGATGCTTTGGTTTTGCAAG
* * * * ** * *
2198050 AAAGGCTTTCTTCCCGCCAA-TTTTGTAAAGTCTAAGCCCATG-C-CTTAAGTGAGACAAACATG
1 AAAGGCTTTCTTTCCTCCAATTTTTGTAAAATCAAAG--TTTGTCTCTTAA-TAAGACAAACA-C
* * * * * * * *
2198112 GATTCTAGTAATAATCTTCCC-TTATTTT-GTGATTAT-GCACTAAAAACACATTCTCCT-ATTT
62 GATTGTTGTAACAATC--CCCATTCTTTTCATGATT-TGGCAC-AAAAACACAGTCTTCTCA-AT
* * ** * **
2198173 AGGATAAAAGGTATTGATGGTTTTCTTTTGCATTA-
122 AGGATAGACGAAATTGATGCTTTGGTTTTGCA--AG
*** * * * ** * ** * **
2198208 AAATATTTTCTTTGC-CCTATTTTCCT-TAAAATCAAAGCTCATCCCTTAAATAAGGTAAGCTTT
1 AAAGGCTTTCTTTCCTCCAATTTT--TGTAAAATCAAAGTTTGTCTCTT-AATAAGACAAAC-AC
* * * * * * **
2198271 GATTCTTGTAACAGA-CCCCATTCTTTTCAAGATTGGGAACCCAAAACACATTCCTT-TCGTTAG
62 GATTGTTGTAACA-ATCCCCATTCTTTTCATGATTTGGCA-CAAAAACACAGT-CTTCTCAATAG
* * * * * ***
2198334 GATA-CCCAACATTAACGCTTTGGTGTCAAAAG
124 GATAGACGAA-ATTGATGCTTTGGTTTTGCAAG
* * * *
2198366 AAAAGGTTTTCTTTCCTCC-ATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACATG
1 -AAAGGCTTTCTTTCCTCCAATTTTTG-TAAAATCAAAGTTTGTCTCTT-AATAAGACAAACACG
* * * * * *
2198430 ATTAGTCT-TACCAATCCCTATTTTTTTCAGGATTTGGCACTATAAACACAGTCTTCTCAATAAG
63 ATT-GT-TGTAACAATCCCCATTCTTTTCATGATTTGGCAC-AAAAACACAGTCTTCTCAATAGG
*
2198494 AT-GACGAAATTGATGCTTTGGTTTTGTAAG
125 ATAGACGAAATTGATGCTTTGGTTTTGCAAG
* *
2198524 AAAGGTTTTCTTCCCAT-CAATTTTTGTAAA
1 AAAGGCTTTCTTTCC-TCCAATTTTTGTAAA
2198554 GTCTAAGTCC
Statistics
Matches: 5630, Mismatches: 1927, Indels: 1129
0.65 0.22 0.13
Matches are distributed among these distances:
154 7 0.00
155 54 0.01
156 74 0.01
157 404 0.07
158 1363 0.24
159 3095 0.55
160 566 0.10
161 67 0.01
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (155 bp):
AAAGGCTTTCTTTCCTCCAATTTTTGTAAAATCAAAGTTTGTCTCTTAATAAGACAAACACGATT
GTTGTAACAATCCCCATTCTTTTCATGATTTGGCACAAAAACACAGTCTTCTCAATAGGATAGAC
GAAATTGATGCTTTGGTTTTGCAAG
Found at i:2192071 original size:477 final size:476
Alignment explanation
Indices: 2189943--2202220 Score: 17185
Period size: 476 Copynumber: 25.8 Consensus size: 476
2189933 GTTTTCATCA
* *
2189943 TTTGGTTTTGCAAGAAAGGT-TTTCTTCCAACCAATTTTTGTAAAGTCTAAGTCCATGCCTCAAG
1 TTTGGTTTTGCAAGAAA-GTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAG
*
2190007 TGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGGACTAAAAACACATT
65 TGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATT
* *
2190072 CTCCTAATTAGGATAAATGATATTGATGGTTTTCTTTTGCTTGAAAATCTTTTCTTTGCCCTATT
130 CTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATT
2190137 TTCCTTAAAATCAAAGCTCATCCCTTAAATAAGGCAAGCTTTGATTCTTGTAACAGTCCCCATTC
195 TTCCTTAAAATCAAAGCTCATCCCTTAAATAAGGCAAGCTTTGATTCTTGTAACAGTCCCCATTC
* * * *
2190202 TTTTCAA-ATTTGGGAACCAAAAACATATTCCTTTCATTTGGATACCCGACATTGACGCTTTGGT
260 TTTTCAAGA-TTGGGAACCAAAAACACATTCCTTTCGTTAGGATACCCGACATTAACGCTTTGGT
* * * * *
2190266 GTCAAAAGAAAAGGTTTTCTTTCCTCCGATTTTGATATAATTAAAGTTTTTCTCTTAAATAAGAC
324 GTCATAAGAAAAGGTTTTCTTTCCTCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
* * *
2190331 AAACACGATTAGTCTTACCAATCCCCATTCTTTTCAGGATTTGGCACTATAAACATAGTCTTCTC
389 AAACATGATTAGTCTTACTAATCCTCATTCTTTTCAGGATTTGGCACTATAAACATAGTCTTCTC
*
2190396 AATAGGATAGACGAAGTTGATGC
454 AATAGGATAGACGAAATTGATGC
2190419 TTTGGTTTTGCAAGAAAGTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGT
1 TTTGGTTTTGCAAGAAAGTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGT
* * * * * * *
2190484 GAGACAAACTTGGATTTTGGTAAGAATCTTCCTTCATTTTGTGATTAGGTACTAAAAACACAATC
66 GAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTC
* *
2190549 TCTTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCTCTATTT
131 TCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTT
* * * *
2190614 TCCTTAAAATCAAAGCTCATCCCTTAGATAAGGCAAGCTCTGATTCTTGTAACAATTCCCATTCT
196 TCCTTAAAATCAAAGCTCATCCCTTAAATAAGGCAAGCTTTGATTCTTGTAACAGTCCCCATTCT
* * *
2190679 TTTCAAGATTGGGAACCAAAAACACATTCCTTTCGTTCGGATACTCGACACTAACGCTTTGGTGT
261 TTTCAAGATTGGGAACCAAAAACACATTCCTTTCGTTAGGATACCCGACATTAACGCTTTGGTGT
* * * * * *
2190744 CATAGGAAAAGGTTTTCTTTCTTCCGATTTTGATAAAATAAAAGTTTGTCTCTTATATAAGACAA
326 CATAAGAAAAGGTTTTCTTTCCTCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
* * * * * *
2190809 ACACGATTAGTTTTACCAATCCCCATTCTTTTCATGATTTGGCACAATAAACATAGTCTTCTCAA
391 ACATGATTAGTCTTACTAATCCTCATTCTTTTCAGGATTTGGCACTATAAACATAGTCTTCTCAA
*
2190874 TAGGATAGACTAAATTGATGC
456 TAGGATAGACGAAATTGATGC
* * **
2190895 TTTGGTTTTGCAAGAAAGGCTTTCTTCCCTCCAATTTTTGTAAAGTCTAAGTCTATGCCTCGTGT
1 TTTGGTTTTGCAAGAAAGTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGT
* *
2190960 AAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTTGGCACTAAAAACACA-T-
66 GAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTC
* *
2191023 T-CTCATTAGGATAAATAATATTGATGGTTTTCTTTTGCATGAAAATCTTCTCTTTGCCCTATTT
131 TCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTT
* * * * *
2191087 TCCTTAAAATCAAAGTTCATCGCTTAAAAAAGGCAAGCATTGATTCTTGCAACAG-CCGCCATTC
196 TCCTTAAAATCAAAGCTCATCCCTTAAATAAGGCAAGCTTTGATTCTTGTAACAGTCC-CCATTC
* * * * * * ** * *
2191151 TTTTCAGGATTGGGAACTAAAAAGACATTCCCTTCATTAAGATACAAGACATTGATGCTTTGGTG
260 TTTTCAAGATTGGGAACCAAAAACACATTCCTTTCGTTAGGATACCCGACATTAACGCTTTGGTG
* * * *
2191216 T-AGTAAGAAAAGTTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTATATCTCTTAAATAAGAC
325 TCA-TAAGAAAAGGTTTTCTTTCCTCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
* * * * * *
2191280 AAACACGATAAGTCTTTCAAATCCCCATTCTTTTCAAGATTTGGCACTATAAACATAGTCTTCTC
389 AAACATGATTAGTCTTACTAATCCTCATTCTTTTCAGGATTTGGCACTATAAACATAGTCTTCTC
* *
2191345 ATTAGGATTA-ACTAAATTGATGC
454 AATAGGA-TAGACGAAATTGATGC
* * * * * * * *
2191368 TTTGGTTTTGCAAAAAAGGCTTTCTTCCCGCCAATCTTTGTAAAGTCTAAGCCCACGCCTTAAGT
1 TTTGGTTTTGCAAGAAAGTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGT
* *
2191433 GAGACAAACATGGATTCTAGTAATAATCTTCACTT-ATTTTGTAATTATGCACTAAAAACACATT
66 GAGACAAACATGGATTCTAGTAATAATCTTCA-TTCATTTTGTGATTAGGCACTAAAAACACATT
* * *
2191497 CTCCTCATTAGGATAAAAGGTATTGATGGTTTTCTTTTGCATGAAAATCATTTCTTTGCCCTATT
130 CTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATT
* * *
2191562 TTCCTTAAAATCAATGCTCATCCCTTAAATAAGGCAAGCTTTGATTCTTGTAACAGACCCCGTTC
195 TTCCTTAAAATCAAAGCTCATCCCTTAAATAAGGCAAGCTTTGATTCTTGTAACAGTCCCCATTC
* * *
2191627 TTTTCAAAATTGTGAACCAAAAACATATTCCTTTCGTTAGGATACCCGACATTAACGCTTTGGTG
260 TTTTCAAGATTGGGAACCAAAAACACATTCCTTTCGTTAGGATACCCGACATTAACGCTTTGGTG
* **
2191692 TCATAGGAAAAGGTTTTCTTTCCTCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATTTGACA
325 TCATAAGAAAAGGTTTTCTTTCCTCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
2191757 AACATGATTAGTCTTACTAATCCTCATTCTTTTCAGGATTTGGCACTATAAACATAGTCTTCTCA
390 AACATGATTAGTCTTACTAATCCTCATTCTTTTCAGGATTTGGCACTATAAACATAGTCTTCTCA
2191822 ATAGGATAGACGAAATTGATGC
455 ATAGGATAGACGAAATTGATGC
* *
2191844 TTTGGCTTTGTAAGAAAGTCTTTCTTCCCACCAATTTTTGGTAAAGTCTAAGTCTATGCCTCAAG
1 TTTGGTTTTGCAAGAAAGTCTTTCTTCCCACCAATTTTT-GTAAAGTCTAAGTCTATGCCTCAAG
* *
2191909 AGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGC-CTTAAAAACGCAT
65 TGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCAC-TAAAAACACAT
* *
2191973 TCTCCTCTTTAGGATAAATGATATTGATGGTTTTCTTTAGCATGAAAATCTTTTCTTTGCCCTAT
129 TCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTAT
*
2192038 TTTCCTTAAAATCAAAGCTCATCCCTTAAATAAGGCAGGCTTTGATTCTTGTAACAGTCCCCATT
194 TTTCCTTAAAATCAAAGCTCATCCCTTAAATAAGGCAAGCTTTGATTCTTGTAACAGTCCCCATT
* *
2192103 CTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCGTTAGGATACCTGACATTAATGCTTTGGT
259 CTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCGTTAGGATACCCGACATTAACGCTTTGGT
* *
2192168 GTCAAAAGATAAGGTTTTCTTTCCT-CGATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA
324 GTCATAAGAAAAGGTTTTCTTTCCTCCG-TTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA
** * *
2192232 CAAACATGATTAGTCTTACCCATCCCCATTCTTTTCAGGATTTGGCACTATAAACACAGTCTTCT
388 CAAACATGATTAGTCTTACTAATCCTCATTCTTTTCAGGATTTGGCACTATAAACATAGTCTTCT
2192297 CAATAGGAT-GACGAAATTGATGC
453 CAATAGGATAGACGAAATTGATGC
* * ** *
2192320 TTTGGTTTTGAAAGAAAGGT-TTTCTTCCCATCAATTTTTGTAAAGTCTAAGTCTGGGCCTCAGG
1 TTTGGTTTTGCAAGAAA-GTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAG
*
2192384 TGAGACAAACATGGATTCTAGAAATAATCTTCATTCATTTTGTGATTCA-GCACTAAAAACACAT
65 TGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATT-AGGCACTAAAAACACAT
* * *
2192448 TCTCCTCAATAGGATAAATAATATTGATGGTTTTCTTTTGTATGAAAATCTTTTCTTTGCCCTAT
129 TCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTAT
* * * ** * *
2192513 TTTCCTT-AAATCAAAGTTCATCCCATAAATAAAGCAAGCACTGATTCTTGTAACAGTCTCTATT
194 TTTCCTTAAAATCAAAGCTCATCCCTTAAATAAGGCAAGCTTTGATTCTTGTAACAGTCCCCA-T
* * * * ** * *
2192577 TTTTTTCAAGATTTGGGAACCAAAAACACATTCCCTTCATTAGTATACATGACATTGACACTTTG
258 TCTTTTCAAGA-TTGGGAACCAAAAACACATTCCTTTCGTTAGGATACCCGACATTAACGCTTTG
*** * * * *
2192642 GTGTTGCAAGAAAAGGTTTCCTTCCCACCGTTTTTGATAGAATCAAAGTTT-TCTTTTAAATAAG
322 GTGTCATAAGAAAAGGTTTTCTTTCCTCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
* * * *
2192706 ACAAACATGAGTAGTCTTGCTAATCCCTAATTGTTTTCAGGATTTGGCACTATAAACATAGTCTT
387 ACAAACATGATTAGTCTTACTAAT-CCTCATTCTTTTCAGGATTTGGCACTATAAACATAGTCTT
* *
2192771 CTCATTAGGATAGGCGAAATTGATGC
451 CTCAATAGGATAGACGAAATTGATGC
* * * *
2192797 TTTGGATTCGCAAGAAAGTCTTTCTTCCCACTAATTTTTTTAAAGTCTAAGTCTATGCCTCAAGT
1 TTTGGTTTTGCAAGAAAGTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGT
*
2192862 GAGACAAAC-TCGGATTTTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATT
66 GAGACAAACAT-GGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATT
* * * * * *
2192926 CTCCTCAATAGGATAAAAGGTATTAATGGTTTTATTTTGCATGAAAATCTTTTCTTTTCCCTATT
130 CTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATT
*
2192991 TTCCTTAAAATCAAAGCTCATCCCTTAAATAAGGCAAGCTTTGATTCTTGTAACAGTCCCCGTTC
195 TTCCTTAAAATCAAAGCTCATCCCTTAAATAAGGCAAGCTTTGATTCTTGTAACAGTCCCCATTC
* * *
2193056 TTTTCAAGAGTGGGAACCAAAAACACATTCCTTTCGTTAGGATACCCGATATTAATGCTTTGGTG
260 TTTTCAAGATTGGGAACCAAAAACACATTCCTTTCGTTAGGATACCCGACATTAACGCTTTGGTG
*
2193121 TCA-AAGGAAAAGGTTTTCTTTCCTCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGAC
325 TCATAA-GAAAAGGTTTTCTTTCCTCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
*
2193185 AAACATGATTAGTCTTACTAATCCTCATTCTTTTTAGGATTTGGCACTATAAACATAGTCTTCTC
389 AAACATGATTAGTCTTACTAATCCTCATTCTTTTCAGGATTTGGCACTATAAACATAGTCTTCTC
2193250 AATAGGATAGACGAAATTGATGC
454 AATAGGATAGACGAAATTGATGC
* *
2193273 TTTGGCTTTGTAAGAAAGTCTTTCTTCCCACCAATTTTTGGTAAAGTCTAAGTCTATGCCTCAAG
1 TTTGGTTTTGCAAGAAAGTCTTTCTTCCCACCAATTTTT-GTAAAGTCTAAGTCTATGCCTCAAG
* * *
2193338 AGAGACAAACATGGATTCTAGTAATAAACTTCATTCATTTTGTGATTAGGCCCTAAAAACACATT
65 TGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATT
*
2193403 CTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTAGCATGAAAATCTTTTCTTTGCCCTATT
130 CTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATT
* * * * * * *
2193468 TTCCTTAAAAACGAAGTTCATCCCTTAAAAAAGGCAAGCATTGATTCTTGCAACAGTCTCCATTC
195 TTCCTTAAAATCAAAGCTCATCCCTTAAATAAGGCAAGCTTTGATTCTTGTAACAGTCCCCATTC
* * * * * ** * * *
2193533 TTTTCAGGATTGGGAACTAAAAACACATTCCCTTCATTAGGTTACAAGACATTGATGCTTTGGTA
260 TTTTCAAGATTGGGAACCAAAAACACATTCCTTTCGTTAGGATACCCGACATTAACGCTTTGGTG
* * * ** * *
2193598 T-AGTAAGAAAAGTTTTTCTTTCCACCGTTTTTGATAGAAACAAAGTACGCCTCCTAAATAAGAC
325 TCA-TAAGAAAAGGTTTTCTTTCCTCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
* * * * * * * **
2193662 AAATACGATAAGTCTTTCTAATCCCCATTCTTTTCAGGATTTGGCATTATAAATATAGGATTCTC
389 AAACATGATTAGTCTTACTAATCCTCATTCTTTTCAGGATTTGGCACTATAAACATAGTCTTCTC
* * *
2193727 ATTAGGATTGACTAAATTGATGC
454 AATAGGATAGACGAAATTGATGC
* * * * * * *
2193750 TTTGTTTTTGCAAGAAAGGCTTTCTTCCCACCAATCTTCGTAAAGTCTAAGCCCATGACTCAAGT
1 TTTGGTTTTGCAAGAAAGTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGT
*
2193815 GAGACAAACATGGATTCTAGTAATAATCTTC-TCTCATTTTGTGATTAGGCACAAAAAACACATT
66 GAGACAAACATGGATTCTAGTAATAATCTTCAT-TCATTTTGTGATTAGGCACTAAAAACACATT
* * * *
2193879 CACCTCATTAGGATAAAAGGTATTGATGGTTTTCTTTTGCATGAAATTCTTTTCTTTGCCCTATT
130 CTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATT
* *
2193944 TTCCTTAAAATCAAAGCTCATCCCTTAAATAAGGCAAGCTTTGATTCTTGTAACAGACCCCGTTC
195 TTCCTTAAAATCAAAGCTCATCCCTTAAATAAGGCAAGCTTTGATTCTTGTAACAGTCCCCATTC
*
2194009 TTTTCAAGATTGGGAACCAAAAACACATTTC-TTCTGTTAGGATACCCGACATTAACGCTTTGGT
260 TTTTCAAGATTGGGAACCAAAAACACATTCCTTTC-GTTAGGATACCCGACATTAACGCTTTGGT
* * * *
2194073 GTCATAGGAAAAGGTTTTCTTTCCTCCATTTTTGATAGAGTCAAAGTTTGTCTATTAAATAAGAC
324 GTCATAAGAAAAGGTTTTCTTTCCTCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
* * * * * *
2194138 AAACATGATTAGTTTTACTAATCCCCACTCTTTACACGATTTGGCACTATAAACATAGTCTTCTT
389 AAACATGATTAGTCTTACTAATCCTCATTCTTTTCAGGATTTGGCACTATAAACATAGTCTTCTC
* *
2194203 AACAGGATTGACGAAATTGATGC
454 AATAGGATAGACGAAATTGATGC
* * *
2194226 TTTGGTTTTGCAAGAATGCCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGTCTCAAGT
1 TTTGGTTTTGCAAGAAAGTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGT
* ** * * *
2194291 GAGACAAATATGGATTCCGGCAGTAATCTTTATTCATTTTGTGATTAGGCACTAAAAACACATTC
66 GAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTC
* * ***
2194356 TCCTCATTAGGATAAATGATATTGTTGGTTTTCTTTTGCTTGAAAATCTTTTCTTTATTGC-ATT
131 TCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTT-GCCCTATT
* * * *
2194420 TTCCTTAAAATCAAAGCTCATCCCGTAAATAAGGCAAGCTTTGATTCATGTAATAGTCCCTATTC
195 TTCCTTAAAATCAAAGCTCATCCCTTAAATAAGGCAAGCTTTGATTCTTGTAACAGTCCCCATTC
* *
2194485 TTTTCAAGATTGGGAACC-AAAA-ACATTCCTTTCATTAGGATACCCAACATTAACGCTTTGGTG
260 TTTTCAAGATTGGGAACCAAAAACACATTCCTTTCGTTAGGATACCCGACATTAACGCTTTGGTG
*
2194548 TCATAGGAAAAGGTTTTCTTTCC-CCTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
325 TCATAAGAAAAGGTTTTCTTTCCTCC-GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
*
2194612 AAACATGATTAGTCTTACTAATCCTCATTCTTTTCAGGATTTGGCACTATAAACATAGTCTTCTT
389 AAACATGATTAGTCTTACTAATCCTCATTCTTTTCAGGATTTGGCACTATAAACATAGTCTTCTC
* * *
2194677 ATTTGGATAGGCGAAATTGATGC
454 AATAGGATAGACGAAATTGATGC
* * * * *
2194700 TTTGGATTCGCAAGAAAGTCTTTCATCCCACTAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGG
1 TTTGGTTTTGCAAGAAAGTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGT
* * * *
2194765 GAGACAAACATGGATTCTATTGATAATCTTCATTCATTTTGTGATTAAGCACTAAAAACACAATC
66 GAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTC
*
2194830 TCCTCATTAGGATAAAAGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTT
131 TCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTT
** * * *
2194895 TCCTTAAAATCAAAGCTCATCCCTTAAATAAGGCACTCTTTGATTCATGTAATAGTCCCTATTCT
196 TCCTTAAAATCAAAGCTCATCCCTTAAATAAGGCAAGCTTTGATTCTTGTAACAGTCCCCATTCT
* *
2194960 TTTCAAGATTGGGAACCAAAAACATATTCCTTTCGCTAGGATACCCGACATTAACGCTTTGGTGT
261 TTTCAAGATTGGGAACCAAAAACACATTCCTTTCGTTAGGATACCCGACATTAACGCTTTGGTGT
* * *
2195025 CATAGGAAAAGGTTTTCTTTCCTCTGTTTTTGATAGAATCAAAGTATGTCTCTTAAATAAGACAA
326 CATAAGAAAAGGTTTTCTTTCCTCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
*
2195090 ACATGATTAGTCTTACTAATCCTCATTCTTTTCAGGATTTGGCACTACAAACATAGTCTTCTCAA
391 ACATGATTAGTCTTACTAATCCTCATTCTTTTCAGGATTTGGCACTATAAACATAGTCTTCTCAA
2195155 TAGGATAGACGAAATTGATGC
456 TAGGATAGACGAAATTGATGC
* *
2195176 TTTGGTTTTGCAAGAAAGTCTTTCTTCCCACAAATTTTTTGTAAAGTCTAAGTATATGCCTCAAG
1 TTTGGTTTTGCAAGAAAGTCTTTCTTCCCACCAA-TTTTTGTAAAGTCTAAGTCTATGCCTCAAG
* * * * *
2195241 GGAGACAAACATGGATTCTATTGATAATCTTCATTCATTTTGTGATTAAGCACTAAAAACACAAT
65 TGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATT
*
2195306 CTCCTCATTAGGATAAAAGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATT
130 CTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATT
* * *
2195371 TTCCTTAAAATCAAAGCTCATCCCTTAAATAAGGCAAGCTTTGATTCATGTAATAGTCCCTATTC
195 TTCCTTAAAATCAAAGCTCATCCCTTAAATAAGGCAAGCTTTGATTCTTGTAACAGTCCCCATTC
* * *
2195436 TTTTCAAGATTGGGAACCAAAAACATATTCCTTTCGTTAGGATACCCAACATTAACGTTTTGGTG
260 TTTTCAAGATTGGGAACCAAAAACACATTCCTTTCGTTAGGATACCCGACATTAACGCTTTGGTG
* *
2195501 TCATAGGAAAAGGTTTTCTTTCCTCTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
325 TCATAAGAAAAGGTTTTCTTTCCTCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
*
2195566 AACATGATTAGTCTTACTAATCCTCATTCTTTTCAGGATTTGGCACTACAAACATAGTCTTCTCA
390 AACATGATTAGTCTTACTAATCCTCATTCTTTTCAGGATTTGGCACTATAAACATAGTCTTCTCA
* *
2195631 AGAGGATAGGCGAAATTGATGC
455 ATAGGATAGACGAAATTGATGC
2195653 TTTGGTTTTGCAAGAAAGTCTTTCTTCCCACCAATTTTTTGTAAAGTCTAAGTCTATGCCTCAAG
1 TTTGGTTTTGCAAGAAAGTCTTTCTTCCCACCAA-TTTTTGTAAAGTCTAAGTCTATGCCTCAAG
* * * * *
2195718 TGAGACAAACTTGGATTCTGGTAAGAATCTTCATTAATTTTGTGATTAGGTACTAAAAACACATT
65 TGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATT
* *
2195783 CTCCTCATTAGGATAAATGATATTTATGGTTTTCTTTTGCATGAAAATCTTTTCTTTACCGC-AT
130 CTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCC-CTAT
* * *
2195847 TTTCCTTAAAATCAAAGCTCATCCCTTAAATAAGGCACA-CTTTGATTCATGTAATAGTCCCTAT
194 TTTCCTTAAAATCAAAGCTCATCCCTTAAATAAGGCA-AGCTTTGATTCTTGTAACAGTCCCCAT
* * *
2195911 TCTTTTCAAGATTGGGAACCAAAAACATATTCCTTTCGCTAGGATACTCGACATTAACGCTTTGG
258 TCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCGTTAGGATACCCGACATTAACGCTTTGG
* * * *
2195976 TGTCATAGGAAAAGGTTTTCTTTCCTCTGTTTTTGATAGAATCAAAGTATGTCTCTTAAATAAAA
323 TGTCATAAGAAAAGGTTTTCTTTCCTCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA
*
2196041 CAAACATGATTAGTCTTACTAATCCTCATTCTTTTCAGGATTTGGCACTACAAACATAGTCTTCT
388 CAAACATGATTAGTCTTACTAATCCTCATTCTTTTCAGGATTTGGCACTATAAACATAGTCTTCT
*
2196106 CAATAGGATAGATGAAATTGATGC
453 CAATAGGATAGACGAAATTGATGC
* * *
2196130 TTTGGTTTTGCAAGAAAGTCTTTCTTTCCACAAATTTTTTGTAAAGTCTAAGTATATGCCTCAAG
1 TTTGGTTTTGCAAGAAAGTCTTTCTTCCCACCAA-TTTTTGTAAAGTCTAAGTCTATGCCTCAAG
* * * * *
2196195 AGAGACAAACATGGATTCTATTGATAATCTTCATTCATTTTGTGATTAAGCACTAAAAACACAAT
65 TGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATT
*
2196260 CTCCTCATTAGGATAAAAGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATT
130 CTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATT
*
2196325 TTCCTTAAAATCAAAGCTCATCCCTTAAATAAGGCAGGCTTTGATTCTTGTAACAGTCCCCATTC
195 TTCCTTAAAATCAAAGCTCATCCCTTAAATAAGGCAAGCTTTGATTCTTGTAACAGTCCCCATTC
* **
2196390 TTTTCAAGATTGGGAACCAAAAAACACATTCCTTTCATTAAAATACCCGACATTAACGCTTTGGT
260 TTTTCAAGATTGGGAACC-AAAAACACATTCCTTTCGTTAGGATACCCGACATTAACGCTTTGGT
* * *
2196455 GTCAAAAGAAAAGGTTTTCATTCCTCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
324 GTCATAAGAAAAGGTTTTCTTTCCTCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
* * * * *
2196520 AAACATGATTAATCTTACCAATCC-CTATTCTTTTCAGGTTTTGGCACTATAAACACAATCTTCT
389 AAACATGATTAGTCTTACTAATCCTC-ATTCTTTTCAGGATTTGGCACTATAAACATAGTCTTCT
*
2196584 TAATAGGAT-GACGAAATTGATGC
453 CAATAGGATAGACGAAATTGATGC
* * * **
2196607 TTTGGTTTTGCAAGAAAGGT-TTTCTTCCCATCAATTTTCGTAAGGTCTAAGTCTGGGCCTCAAG
1 TTTGGTTTTGCAAGAAA-GTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAG
* *
2196671 TGAGACAAACATGGATTTTAGTAATAATCTTCATTCATTTTGTGATTCGGCACTAAAAACACATT
65 TGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATT
* * *
2196736 CTCCTCATTAGGATAAAAGGTATTGATGGTTTTCTTTTACATGAAAATCTTTTCTTTGCCCTATT
130 CTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATT
*
2196801 TTCCTTAAAATCAAAGCTCATCCCTTAAATAAGGCAAGCTTTGATTCTTGTAACA-TACCCCGTT
195 TTCCTTAAAATCAAAGCTCATCCCTTAAATAAGGCAAGCTTTGATTCTTGTAACAGT-CCCCATT
* * *
2196865 CTTTTCAAGATTGGGAACCAAAAACACAATT-CTTCCGTTAGGATACCCGACATTAATGCCTTGG
259 CTTTTCAAGATTGGGAACCAAAAACAC-ATTCCTTTCGTTAGGATACCCGACATTAACGCTTTGG
* * * * *
2196929 TGTCATAGGAAAAGGTTTTCTTTCCTCTGTTTTTAATAGAGTCAAAGTTTGTCTATTAAATAAGA
323 TGTCATAAGAAAAGGTTTTCTTTCCTCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA
* * * *
2196994 CAAACATGATTAGTTTTACTAATCCCCACTCTTTACAGGATTTGGCACTATAAACATAGTCTTCT
388 CAAACATGATTAGTCTTACTAATCCTCATTCTTTTCAGGATTTGGCACTATAAACATAGTCTTCT
* * *
2197059 TAACAGGATTGACGAAATTGATGC
453 CAATAGGATAGACGAAATTGATGC
* * * *
2197083 TTTGGTTTCGCAAGAATGCCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGTCTCAAGT
1 TTTGGTTTTGCAAGAAAGTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGT
* * * * *
2197148 GAGACAAATATGGATTCCAGCAGTAATCTTTATTCATTTTGTGATTAGGCACTAAAAACACATTC
66 GAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTC
* * *
2197213 TCCTCATTAGGATAAATGATATTGTTGGTTTTCTTTTGCATGAAAATCTTTTCTTTATCGC-ATT
131 TCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTT-GCCCTATT
* * *
2197277 TTCCTTAAAATCAAAGCTCATCCCTTAAATAAGGCAAGCTTTGATTCATGTAATAGTCCCTATTC
195 TTCCTTAAAATCAAAGCTCATCCCTTAAATAAGGCAAGCTTTGATTCTTGTAACAGTCCCCATTC
* * *
2197342 TTTTCAAGATTGGGAACCAAAAACATATTCCTTTAGTTAGGATACCCAACATTAACGCTTTGGTG
260 TTTTCAAGATTGGGAACCAAAAACACATTCCTTTCGTTAGGATACCCGACATTAACGCTTTGGTG
* * * *
2197407 TCATAGGAAAAGGTTTTCTTTCCTCTGTTTTTTATAGAATCAAAGTTTGTCTGTTAAATAAGACA
325 TCATAAGAAAAGGTTTTCTTTCCTCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
*
2197472 AACATGATTAGTCTTACTAATCCTCATTCTTTTCAGGATTTGGCACTACAAACATAGTCTTCTCA
390 AACATGATTAGTCTTACTAATCCTCATTCTTTTCAGGATTTGGCACTATAAACATAGTCTTCTCA
* *
2197537 AGAGGATAGGCGAAATTGATGC
455 ATAGGATAGACGAAATTGATGC
* *
2197559 TTTGATTTTGCAAGAAAGTCTTTCTTCTCACCAATTTTTTGTAAAGTCTAAGTCTATGCCTCAAG
1 TTTGGTTTTGCAAGAAAGTCTTTCTTCCCACCAA-TTTTTGTAAAGTCTAAGTCTATGCCTCAAG
* * *
2197624 GGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTTTGATTAAGCACTAAAAACACATT
65 TGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATT
* * * * *
2197689 CTCCTCATCAAGATAAAAGGTATTGATGGTTTTCTTTTACATGAAAATCTTTTCTTTGCCCTATT
130 CTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATT
* *
2197754 TTCCTTAAAATCAAAGCTCATCCCTTAAATAAGGCAAGCTTTGATTCTTGTAACAGACCCCGTTC
195 TTCCTTAAAATCAAAGCTCATCCCTTAAATAAGGCAAGCTTTGATTCTTGTAACAGTCCCCATTC
* * * * * *
2197819 TTTTCAAGATTGGGAACCCAAAACACAATT-CTTCCATTAGGATACCTGACATTAATGCGTTGGT
260 TTTTCAAGATTGGGAACCAAAAACAC-ATTCCTTTCGTTAGGATACCCGACATTAACGCTTTGGT
* *
2197883 GTCATAGGAAAAGGTTTTCTTTCCTCCGTTTTTGATAGAATCATAGTTTGTCTCTTAAATAAGAC
324 GTCATAAGAAAAGGTTTTCTTTCCTCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
* * *
2197948 AAACATGATTAGT-TATACTAATCCCCATTCTTTACAGGATTTGGCACTATAAACGTAGTCTTCT
389 AAACATGATTAGTCT-TACTAATCCTCATTCTTTTCAGGATTTGGCACTATAAACATAGTCTTCT
*
2198012 CAATAGGATTGACGAAATTGATGC
453 CAATAGGATAGACGAAATTGATGC
* * * * *
2198036 TTTGGTTTTGCAAGAAAGGCTTTCTTCCCGCCAA-TTTTGTAAAGTCTAAGCCCATGCCTTAAGT
1 TTTGGTTTTGCAAGAAAGTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGT
* *
2198100 GAGACAAACATGGATTCTAGTAATAATCTTCCCTT-ATTTTGTGATTATGCACTAAAAACACATT
66 GAGACAAACATGGATTCTAGTAATAATCTT-CATTCATTTTGTGATTAGGCACTAAAAACACATT
* * * *
2198164 CTCCT-ATTTAGGATAAAAGGTATTGATGGTTTTCTTTTGCATTAAAATATTTTCTTTGCCCTAT
130 CTCCTCA-TTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTAT
* *
2198228 TTTCCTTAAAATCAAAGCTCATCCCTTAAATAAGGTAAGCTTTGATTCTTGTAACAGACCCCATT
194 TTTCCTTAAAATCAAAGCTCATCCCTTAAATAAGGCAAGCTTTGATTCTTGTAACAGTCCCCATT
* *
2198293 CTTTTCAAGATTGGGAACCCAAAACACATTCCTTTCGTTAGGATACCCAACATTAACGCTTTGGT
259 CTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCGTTAGGATACCCGACATTAACGCTTTGGT
* * *
2198358 GTCAAAAGAAAAGGTTTTCTTTCCTCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAG
324 GTCATAAGAAAAGGTTTTCTTTCCTCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
* * *
2198423 AAACATGATTAGTCTTACCAATCC-CTATTTTTTTCAGGATTTGGCACTATAAACACAGTCTTCT
389 AAACATGATTAGTCTTACTAATCCTC-ATTCTTTTCAGGATTTGGCACTATAAACATAGTCTTCT
*
2198487 CAATAAGAT-GACGAAATTGATGC
453 CAATAGGATAGACGAAATTGATGC
* * *** * *
2198510 TTTGGTTTTGTAAGAAAGGT-TTTCTTCCCATCAATTTTTGTAAAGTCTAAGTCCGGGCCTGAGG
1 TTTGGTTTTGCAAGAAA-GTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAG
* * * * *
2198574 TGAGATAAACATGGATTCTAGAAATAATCTTCATTCATTTTGTGATTCGGTACTAAAAGCACATT
65 TGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATT
* * * * * *
2198639 ATCCTCAATAAGATAAATAATATTGATGGTTTTCTTTTGTATGAAAATCTTTTCTTTGCCATATT
130 CTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATT
* * * * * * * *
2198704 TCCCTTAAAATCAAAGTTCATCCCGTAAATAAAGCAAGCATTGATTCTTGTAACAGTCTCTATTT
195 TTCCTTAAAATCAAAGCTCATCCCTTAAATAAGGCAAGCTTTGATTCTTGTAACAGTCCCCATTC
* * * * ** * * *
2198769 TTTTCAAGATTGGGAACAAAAAACACATTCCCTTCATTAGTATACATGACATTGACACTTTGATG
260 TTTTCAAGATTGGGAACCAAAAACACATTCCTTTCGTTAGGATACCCGACATTAACGCTTTGGTG
*** * * * * *
2198834 TTGCAAGAAAAGGTTTCCCTCCCACCGTTTTTGATAGAATCAAAGTTT-TCTTTTAAATAAGACA
325 TCATAAGAAAAGGTTTTCTTTCCTCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
* * * * * *
2198898 CACATGAGTAGTCTTGCTAATCCCTAATTGTTTTCAGGATTTGGCACTATAAACATAGTCTTCTT
390 AACATGATTAGTCTTACTAAT-CCTCATTCTTTTCAGGATTTGGCACTATAAACATAGTCTTCTC
* * * *
2198963 ATTTGGATAGGCAAAATTGATGC
454 AATAGGATAGACGAAATTGATGC
* * * * * * * *
2198986 TTTGGATTCGCAAGAAAGGCTTTCTTCCCGCCAATCTTTGTAAAGTCTAAGCCCATGCCTTAAGT
1 TTTGGTTTTGCAAGAAAGTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGT
* * * *
2199051 GAGAGAAACATGGATTCTAGTAATAATCTTCCCTT-ATTTTGTGATTATGCACAAAAAACACATT
66 GAGACAAACATGGATTCTAGTAATAATCTT-CATTCATTTTGTGATTAGGCACTAAAAACACATT
*
2199115 CTCCT-ATTTAGGATAAAAGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTAT
130 CTCCTCA-TTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTAT
* *
2199179 TTTCCTTAAAATCAAAGCTCATCCCTTAAATAAGGTAGGCTTTGATTCTTGTAACAGTCCCCATT
194 TTTCCTTAAAATCAAAGCTCATCCCTTAAATAAGGCAAGCTTTGATTCTTGTAACAGTCCCCATT
*
2199244 CTTTTCAAGA-TGAGGAACCCAAAACACATTCCTTTCGTTAGGATACCCGACATTAACGCTTTGG
259 CTTTTCAAGATTG-GGAACCAAAAACACATTCCTTTCGTTAGGATACCCGACATTAACGCTTTGG
* *
2199308 TGTCAAAAGAAAAGGTTTTCTTTCCTCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA
323 TGTCATAAGAAAAGGTTTTCTTTCCTCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA
* * * *
2199373 GAAACATGATTAGTCTTACCAATCC-CTATTTTTTTCAGGATTTGGCACTATAAACACAGTCTTC
388 CAAACATGATTAGTCTTACTAATCCTC-ATTCTTTTCAGGATTTGGCACTATAAACATAGTCTTC
2199437 TCAATAGGAT-GACGAAATTGATGC
452 TCAATAGGATAGACGAAATTGATGC
* * *** * *
2199461 TTTGGTTTTGCAAGAAAGGT-TTTCTTCCCATCAATTTTTGTAATGTCTAAGTCCGGGCCTGAGG
1 TTTGGTTTTGCAAGAAA-GTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAG
* * * * * * *
2199525 TGAGATAAACATGAATTCTAGAAATAATCTTCATTTATTTTGTGATTTGGTACTAAAAGCACATT
65 TGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATT
* * * *
2199590 CTCCTCAATAGGATAAATAATATTGATGGTTTTCTTTTGTATGAAAATCTTTTCTTTGCCATATT
130 CTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATT
* * * * * * * *
2199655 TCCCTTAAAATCAAAGTTCATCCCGTAAATAAAGCAAGCATTGATTCTTGTAACAGTCTCTATTT
195 TTCCTTAAAATCAAAGCTCATCCCTTAAATAAGGCAAGCTTTGATTCTTGTAACAGTCCCCATTC
* * * * ** * *
2199720 TTTTCAAGATTGGGAACAAAAAACACATTCCCTTCATTAGTATACTTGACATTGACACTTTGGTG
260 TTTTCAAGATTGGGAACCAAAAACACATTCCTTTCGTTAGGATACCCGACATTAACGCTTTGGTG
*** * * * *
2199785 TTGCAAGAAAAGGTTTCCTTCCCACCGTTTTTGATAGAATCAAAGTTT-TCTTTTAAATAAGACA
325 TCATAAGAAAAGGTTTTCTTTCCTCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
* * * * ** *
2199849 CACATGAATAGTCTTGCTAATCCCTAATGGTTTTCAGGATTTGGCACTATAAACATAGTCTTCTT
390 AACATGATTAGTCTTACTAAT-CCTCATTCTTTTCAGGATTTGGCACTATAAACATAGTCTTCTC
* * *
2199914 ATTTGGATAGGCGAAATTGATGC
454 AATAGGATAGACGAAATTGATGC
* * * * *
2199937 TTTGGATTCGCAAGAAAGTCTTTCATCCCACTAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGG
1 TTTGGTTTTGCAAGAAAGTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGT
* *
2200002 GAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTTTGATTAAGCACTAAAAACACATTC
66 GAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTC
* * * * *
2200067 TCCTCATCAAGATAAAAGATATTGATGGTTTTATTTTGCATGAAAATCTTTTCTTTGCCCCATTT
131 TCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTT
* * * * *
2200132 TCCTTAAAATCAAAGCTCATCCCTCAAATAAGGTAGGCTTTGATTCTTATAACAGTCCCCGTTCT
196 TCCTTAAAATCAAAGCTCATCCCTTAAATAAGGCAAGCTTTGATTCTTGTAACAGTCCCCATTCT
** * * * * *
2200197 TTTTGAGAGTGGGAACCAAAAACACATTCTTTTCATTAAGATACCCGACATTGACGCTTTGGTGT
261 TTTCAAGATTGGGAACCAAAAACACATTCCTTTCGTTAGGATACCCGACATTAACGCTTTGGTGT
** *
2200262 CATAAGAAAAGGTTTTCTTTCCTCCAATTTTGATAGAATCAAAGTTTTTCTCTTAAATAAGACAA
326 CATAAGAAAAGGTTTTCTTTCCTCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
* * * *
2200327 ACATGATGAGTCTTACCAATCCCCATTCTTTTTAGGATTTGGCACTATAAACATAGTCTTCTCAA
391 ACATGATTAGTCTTACTAATCCTCATTCTTTTCAGGATTTGGCACTATAAACATAGTCTTCTCAA
*
2200392 TAGGATACAC-AAAGTTGATGC
456 TAGGATAGACGAAA-TTGATGC
* * * *
2200413 TTTGATTTTGCAAGAAAGTGTTTCTTCCCAACAATTTTTGTAAAGTCTAAATCTATGCCTCAAGT
1 TTTGGTTTTGCAAGAAAGTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGT
* * *
2200478 GAGACAAACTTGGATTCTCGTAAGAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTC
66 GAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTC
*
2200543 TCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTACCGC-ATT
131 TCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCC-CTATT
** * *
2200607 TTCCTTAAAATCAAAGCTCATCTATTAAATAAGGCAAGCTTTGATTCATGTAATAGTCCCCATTC
195 TTCCTTAAAATCAAAGCTCATCCCTTAAATAAGGCAAGCTTTGATTCTTGTAACAGTCCCCATTC
* * *
2200672 TTTTCAAGATTGGGAACCAAAAACATATTCCTTTTGTTAGGATACCCGACATTAATGCTTTGGTG
260 TTTTCAAGATTGGGAACCAAAAACACATTCCTTTCGTTAGGATACCCGACATTAACGCTTTGGTG
* *
2200737 TCAAAAGAAAAGGTTTTCTTTCCTCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
325 TCATAAGAAAAGGTTTTCTTTCCTCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
* * *
2200802 AACATGATTAGTCTTACCAATCC-CTATTCTTTTCAGGATTTAGCACTATAAACACAGTCTTCTC
390 AACATGATTAGTCTTACTAATCCTC-ATTCTTTTCAGGATTTGGCACTATAAACATAGTCTTCTC
* * *
2200866 AATGGGAT-GACAAAATTTATGC
454 AATAGGATAGACGAAATTGATGC
* *
2200888 TTTGGTTTTGCAAGAAAGTATTTCTTCCCACCAATTTTTGTAAAGTCTAAATCTATGCCTCAAGT
1 TTTGGTTTTGCAAGAAAGTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGT
* * *
2200953 GAGACAAACTTGGATTCTCGTAAGAATCTTCATTCATTTTGTGATT-GAGCACTAAAAACACATT
66 GAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAG-GCACTAAAAACACATT
* * *
2201017 CTCCTCATCAAGATAAAAGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATT
130 CTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATT
* *
2201082 TTCCTTAAAATCAAAGCTCATCCCTTAAATAAGGTAGGCTTTGATTCTTGTAACAGTCCCCATTC
195 TTCCTTAAAATCAAAGCTCATCCCTTAAATAAGGCAAGCTTTGATTCTTGTAACAGTCCCCATTC
* *
2201147 TTTTCAAGA-TGAGGAACCCAAAACACATTCCTTTCGTTAGGATACTCGACATTAACGCTTTGGT
260 TTTTCAAGATTG-GGAACCAAAAACACATTCCTTTCGTTAGGATACCCGACATTAACGCTTTGGT
* *
2201211 GTCAAAAGAAAAGGTTTTCTTTCCTCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
324 GTCATAAGAAAAGGTTTTCTTTCCTCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
* * * *
2201276 AAACATGATTAGTCTTACCAATCC-CTATTCTTTTCAGGATTTAGCACTATAACCACAGTCTTCT
389 AAACATGATTAGTCTTACTAATCCTC-ATTCTTTTCAGGATTTGGCACTATAAACATAGTCTTCT
* * *
2201340 CAATGGGAT-GACAAAATTTATGC
453 CAATAGGATAGACGAAATTGATGC
* ** * *
2201363 TTTGGTTTTGCAAGAAAGGT-TTTCTTCCCATCAATTTTTGTAAAGTCTAAGTCTGGGCCTGAGG
1 TTTGGTTTTGCAAGAAA-GTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAG
* * * * * **
2201427 TGAGATAAACATGGATTCTAGAAATAATCTTCATTTATTTTGTGATTCGGCACTAAAAATATGTT
65 TGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATT
* * * * *
2201492 CTTCTCAATAGGATAAATAATATTGATGGTTTTCTTTTGTATGAAAATCTTTTCTTTGCCCTATA
130 CTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATT
* * * * * * * * *
2201557 TCCCTTAAAATCAAAGTTCATCCCATAAATAAAGCAAGCATTAATTCTTGTAACAGTCTCTATTT
195 TTCCTTAAAATCAAAGCTCATCCCTTAAATAAGGCAAGCTTTGATTCTTGTAACAGTCCCCATTC
* * * *** * *
2201622 TTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGTATATATGACATTGACACTTTGGTG
260 TTTTCAAGATTGGGAACCAAAAACACATTCCTTTCGTTAGGATACCCGACATTAACGCTTTGGTG
** * * *
2201687 TCGCAAGAAAAGG-TTTCTTTCCCACCATTTTTGATAGAATCAAAGTTT-T-TTTTAAATAAGAC
325 TCATAAGAAAAGGTTTTCTTT-CCTCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
* * * *
2201749 AAACATGAATAGTCTTGCTAATCCCTAATTGTTTTCAGGATTTGGCACTATAAACATAGTCTTCT
389 AAACATGATTAGTCTTACTAAT-CCTCATTCTTTTCAGGATTTGGCACTATAAACATAGTCTTCT
*
2201814 CAATAGGATAGACGAAGTTGATGC
453 CAATAGGATAGACGAAATTGATGC
2201838 TTTGGTTTTGCAAGAAAGTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGT
1 TTTGGTTTTGCAAGAAAGTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGT
* * * *
2201903 GAGACAAACTTGGATTCTGGTAAGAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACAATC
66 GAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTC
* * *
2201968 TCTTCATTAGGATAAATGATATTTATGGTTTTCTTTTGCATGAAAATCTTTTCGTTGCCCTATTT
131 TCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTT
* * *
2202033 TTCTTAAAATCAAAGCTCATCCCTTAAATAAGGCAAGCTCTGATTCTTGTAACAGTTCCCATTCT
196 TCCTTAAAATCAAAGCTCATCCCTTAAATAAGGCAAGCTTTGATTCTTGTAACAGTCCCCATTCT
* * * * * * * *
2202098 TTTCAAGATTAGGAACCAAAAACATATTCCTTTTGTTCGGATACTCGACATTGATGCTTTGGTAT
261 TTTCAAGATTGGGAACCAAAAACACATTCCTTTCGTTAGGATACCCGACATTAACGCTTTGGTGT
* * *
2202163 -AGTAAGAAAAGTTTTTCTTT-CTCCCGTTTTTAATGGAATCAAAGTTTGTCTCTTAAAT
326 CA-TAAGAAAAGGTTTTCTTTCCT-CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
2202221 TGATGACAAC
Statistics
Matches: 10496, Mismatches: 1194, Indels: 223
0.88 0.10 0.02
Matches are distributed among these distances:
472 2 0.00
473 440 0.04
474 645 0.06
475 2531 0.24
476 3945 0.38
477 2714 0.26
478 219 0.02
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (476 bp):
TTTGGTTTTGCAAGAAAGTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGT
GAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTC
TCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTT
TCCTTAAAATCAAAGCTCATCCCTTAAATAAGGCAAGCTTTGATTCTTGTAACAGTCCCCATTCT
TTTCAAGATTGGGAACCAAAAACACATTCCTTTCGTTAGGATACCCGACATTAACGCTTTGGTGT
CATAAGAAAAGGTTTTCTTTCCTCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
ACATGATTAGTCTTACTAATCCTCATTCTTTTCAGGATTTGGCACTATAAACATAGTCTTCTCAA
TAGGATAGACGAAATTGATGC
Found at i:2200379 original size:159 final size:160
Alignment explanation
Indices: 2200214--2201341 Score: 446
Period size: 159 Copynumber: 7.1 Consensus size: 160
2200204 AGTGGGAACC
* * * *
2200214 AAAAACACATTCTTTTCATTAAGATACCCGACATTGACGCTTTGGTGTCATAAGAAAAGGTTTTC
1 AAAAACACATTCTTCTCATTAGGATACACGACATTGATGCTTTGGTGTCATAAGAAAAGGTTTTC
*
2200279 TTTCCTCCAATTTTGATAGAATCAAAGTTTTTCTCTTAAATAAGACAAACATGATGAGTCT-TAC
66 TTTCCTCCAATTTTGATAGAATCAAAGTTTTTCTCTTAAATAAGACAAACATGATGAGTCTGTAA
*
2200343 CAATCCCCATTCTTTTTAGGATTTGGCACT
131 CAATCCCCATTCTTTTCAGGATTTGGCACT
* * * * * * * ***
2200373 ATAAACATAGTCTTCTCAATAGGATACAC-AAAGTTGATGCTTTGATTTTGCAAG-AAA-GTGTT
1 AAAAACACATTCTTCTCATTAGGATACACGACA-TTGATGCTTTGGTGTCATAAGAAAAGGT-TT
* ** * * * * * * *
2200435 TCTTCCCAACAATTTTTG-TA-AAGTCTAAA-TCTATGC-CTCAAGTGAGACAAACTTG--GATT
64 TCTTTCCTCCAA-TTTTGATAGAA-TC-AAAGT-TTTTCTCTTAAATAAGACAAACATGATGAGT
* ** *
2200494 CTCGTAAGAATCTTCATTCATTTT--GTGATTAGGCACT
125 CT-GTAACAATCCCCATTC-TTTTCAG-GATTTGGCACT
* * * * * ** * **
2200531 AAAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCAT--GAAAATCTTT
1 AAAAACACATTCTTCTCATTAGGATACACGACATTGAT-GCTTTGGTGT-CATAAGAAAAGGTTT
* ** * * ** * * * * *
2200594 TCTTTACC-GC-ATTTTCCTTAAAATCAAAGCTCATCTATTAAATAAGGCAAGC-T-TTGATTCA
64 TCTTT-CCTCCAATTTT-GATAGAATCAAAGTTTTTCTCTTAAATAAGACAAACATGATGAGTC-
* * * * * *
2200655 TGTAATAGTCCCCATTCTTTTCAAGATTGGGAACC
126 TGTAACAATCCCCATTCTTTTCAGGATTTGGCACT
* ** * * *
2200690 AAAAACATATTCCTT-TTGTTAGGATACCCGACATTAATGCTTTGGTGTCAAAAGAAAAGGTTTT
1 AAAAACACATT-CTTCTCATTAGGATACACGACATTGATGCTTTGGTGTCATAAGAAAAGGTTTT
* * *
2200754 CTTTCCTCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCT-TA
65 CTTTCCTCCAATTTTGATAGAATCAAAGTTTTTCTCTTAAATAAGACAAACATGATGAGTCTGTA
* * *
2200818 CCAATCCCTATTCTTTTCAGGATTTAGCACT
130 ACAATCCCCATTCTTTTCAGGATTTGGCACT
* * * * * * * ***
2200849 ATAAACACAGTCTTCTCAATGGGATGACA--AAATTTATGCTTTGGTTTTGCAAG-AAA-GTATT
1 AAAAACACATTCTTCTCATTAGGAT-ACACGACATTGATGCTTTGGTGTCATAAGAAAAGGT-TT
* * * * * * * * *
2200910 TCTTCCCACCAATTTTTG-TA-AAGTCTAAA-TCTATGC-CTCAAGTGAGACAAACTTG--GATT
64 TCTTTCCTCCAA-TTTTGATAGAA-TC-AAAGT-TTTTCTCTTAAATAAGACAAACATGATGAGT
* **
2200969 CTCGTAAGAATCTTCATTCATTTT--GTGA-TTGAGCACT
125 CT-GTAACAATCCCCATTC-TTTTCAG-GATTTG-GCACT
* * * * * * * ** * **
2201006 AAAAACACATTCTCCTCATCAAGATAAAAGATATTGATGGTTTTCTTTTGCAT--GAAAATCTTT
1 AAAAACACATTCTTCTCATTAGGATACACGACATTGAT-GCTTTGGTGT-CATAAGAAAAGGTTT
* * ** * * ** * ** ** * *
2201069 TCTTTGC-CCTATTTTCCTTAAAATCAAAGCTCATCCCTTAAATAAGGTAGGC-T-TTGATTCTT
64 TCTTTCCTCCAATTTT-GATAGAATCAAAGTTTTTCTCTTAAATAAGACAAACATGATGAGTC-T
* * ** * *
2201131 GTAACAGTCCCCATTCTTTTCAAGATGAGGAACC
127 GTAACAATCCCCATTCTTTTCAGGATTTGGCACT
* * * * * *
2201165 CAAAACACATTCCTT-TCGTTAGGATACTCGACATTAACGCTTTGGTGTCAAAAGAAAAGGTTTT
1 AAAAACACATT-CTTCTCATTAGGATACACGACATTGATGCTTTGGTGTCATAAGAAAAGGTTTT
* * *
2201229 CTTTCCTCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCT-TA
65 CTTTCCTCCAATTTTGATAGAATCAAAGTTTTTCTCTTAAATAAGACAAACATGATGAGTCTGTA
* * *
2201293 CCAATCCCTATTCTTTTCAGGATTTAGCACT
130 ACAATCCCCATTCTTTTCAGGATTTGGCACT
* * *
2201324 ATAACCACAGTCTTCTCA
1 AAAAACACATTCTTCTCA
2201342 ATGGGATGAC
Statistics
Matches: 674, Mismatches: 226, Indels: 138
0.65 0.22 0.13
Matches are distributed among these distances:
155 4 0.01
156 14 0.02
157 86 0.13
158 168 0.25
159 363 0.54
160 31 0.05
161 8 0.01
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (160 bp):
AAAAACACATTCTTCTCATTAGGATACACGACATTGATGCTTTGGTGTCATAAGAAAAGGTTTTC
TTTCCTCCAATTTTGATAGAATCAAAGTTTTTCTCTTAAATAAGACAAACATGATGAGTCTGTAA
CAATCCCCATTCTTTTCAGGATTTGGCACT
Found at i:2207385 original size:42 final size:42
Alignment explanation
Indices: 2207339--2207457 Score: 175
Period size: 42 Copynumber: 2.8 Consensus size: 42
2207329 TTCTTCTCTC
* * *
2207339 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTTTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
2207381 CTCCTCCTATCATCCCTCCTATCTTTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
2207423 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
2207458 TTGAGGGCTA
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 68 1.00
ACGTcount: A:0.08, C:0.45, G:0.03, T:0.45
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:2211091 original size:475 final size:474
Alignment explanation
Indices: 2209065--2213920 Score: 5898
Period size: 476 Copynumber: 10.3 Consensus size: 474
2209055 GTTTTCATCA
* * * *
2209065 TAAATAAGACAAACATGATTAGTCTTACTAATTCCCATTCTTTTCTGGATTTGGGACTATAAACA
1 TAAATAAGACAAACATAATTAGTCTTAC-AAATCCCATTCTTTTCAGGATTTGGCACTATAAACA
* *
2209130 TAGTCTTCAC-ATAGGATAGACGAAATTGATGCTTTGGTTTTGCAAGAAAGG----CTTCCCACC
65 TAGTCTTCTCAATAGGATAGACTAAATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACC
* * * ** * * * *
2209190 GATTTTTGTATAGTCTAAGTTTGCGCCTTAAGTGAGACAAACATGGATTCCAGTAATAATCCTCA
130 AATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTAAGACAAACATGGATTCTAGTAATAATCTTCA
* * * *
2209255 TTCATTTTTTGATTAGGCACTAAAAACACATTCCCCTCATTAAGATAAA-AGAAATTGATGGTTT
195 TTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATAAATA-ATATTGATGGTTT
* * * *
2209319 TCTTCTGCATGAAATTTTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAAAA
259 TCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCCCTTAAAAAA
*** * * * * * *
2209384 GGCAATAATTGATTCTTGCAACTGTCTCCATTCTTTTCAGGATTGGGAACTAAAAACACATTCCC
324 -GCAAGCTTTGATTCTTGCAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACACAATCCT
* * * * * * *
2209449 TTCGTTAGGATATACGATATTGATGCTTTGGTGT-AGCAAGAAAAGTTTTTCTTT-CTACCGTTT
388 TTCATTAGGATACACGACATTGACGCTTTGGTGTCA-TAAGAAAAGGTTTTCTTTCCT-CTGTTT
* *
2209512 TTTATAGAATCAAAGTATGTCTCT
451 TTGATAGAATCAAAGTTTGTCTCT
* * * ** *
2209536 TAAATAAGACAAACATGATAAGTCTGACTAGTTCCTATTCTTTTCAGGATTTGGCACTATAAACA
1 TAAATAAGACAAACATAATTAGTCTTAC-AAATCCCATTCTTTTCAGGATTTGGCACTATAAACA
* * * *
2209601 TAGTCTTCTCATTATGATTGACTAAATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTTTCCCACC
65 TAGTCTTCTCAATAGGATAGACTAAATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACC
* * * * *
2209666 AATCTTTGTAAAGTCTAAGCCCATGCCTCAAGTGAGGCAAACATGGATTCTAGTAATAATCTTCA
130 AATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTAAGACAAACATGGATTCTAGTAATAATCTTCA
* * * *
2209731 CTCATTTTGTGATTAGGAACTAAAAACACATTCTCCTCATCAGGATAAA-AGGTATTGATGGTTT
195 TTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATAAATA-ATATTGATGGTTT
* *
2209795 TATTTTGCATGAAAATCTTTTCTTTGCCCCATTTTCCTTAAAATCAAAGCTCATCCCTTAAATAA
259 TCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCCCTTAAA-AA
* * * * *
2209860 GGCAAGCTTTGATTCTTGTAACAGTCCCCATTCTTTTCAAGAGTGGGAACCAAAAACGCATTCCT
323 AGCAAGCTTTGATTCTTGCAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACACAATCCT
* * * ***
2209925 TTCGTTAGGATACCCGACATTGACGCTTTGGTGTCAAAAGAAAAGGTTTTCTTTCCTCCAATTTT
388 TTCATTAGGATACACGACATTGACGCTTTGGTGTCATAAGAAAAGGTTTTCTTTCCTCTGTTTTT
*
2209990 GATAGAATCAAAGTTTTTCTCT
453 GATAGAATCAAAGTTTGTCTCT
*
2210012 TAAATAAGACAAACATGATTAG---------------TCTTTT-AGGATTTGGCACTATAAACAT
1 TAAATAAGACAAACATAATTAGTCTTACAAATCCCATTCTTTTCAGGATTTGGCACTATAAACAT
* * * * * *
2210061 AGTCTTCTCAATAGGATAGACGAAGTTGATGCTTTGGTTTAGCAAGAAAGTCTTTCTTCACAACA
66 AGTCTTCTCAATAGGATAGACTAAATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCA
* * * *
2210126 ATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAACTTGGATTCTGGTAAGAATCTTCAT
131 ATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTAAGACAAACATGGATTCTAGTAATAATCTTCAT
** *
2210191 TCATTTTGTGATTAGGCGTTAAAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTC
196 TCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATAAATAATATTGATGGTTTTC
* *
2210256 TTTTGCATGAAAATCTTTTCTTTGCCTTATTTTTCC-TAAAATCAAAGCTCATCCCTTAAATAAG
261 TTTTGCATGAAAATCTTTTCTTTGCCCTA-TTTTCCTTAAAATCAAAGCTCATCCCTTAAA-AAA
* * * *
2210320 GCAAGCTTTGATTCTTGTAACAGTTCCCATTCTCTTCAAGATTGGGAACCAAAACCAC-ATGCCT
324 GCAAGCTTTGATTCTTGCAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACACAAT-CCT
** * * * * * *
2210384 TTCGA-TCCGATACTCGACATTGACGCTTTGGTGTCATAGGAAAAGGTTTGCTTTCTTTTGATTT
388 TTC-ATTAGGATACACGACATTGACGCTTTGGTGTCATAAGAAAAGGTTTTCTTTCCTCTGTTTT
*
2210448 TGGTAGAATCAAAGTTTGTCTCT
452 TGATAGAATCAAAGTTTGTCTCT
* * *
2210471 TAAATAAGACAAACATAGTTAGTCTTACCAATCCCTATTCTTTTCATGATTTGGCACTATAAACA
1 TAAATAAGACAAACATAATTAGTCTTACAAATCCC-ATTCTTTTCAGGATTTGGCACTATAAACA
* * *
2210536 TAGTCTTCTCAATAGGATAGACGAAATTGATGCTTTGGTTTTGCAAGAAAGGTTTTCTTCCCTCC
65 TAGTCTTCTCAATAGGATAGACTAAATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACC
* * *
2210601 AATTTTTGAAAAGTCTAAGTCTATGCCTCGAGTAAGACAAACATGGATTCTAGTAATAATGTTCA
130 AATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTAAGACAAACATGGATTCTAGTAATAATCTTCA
* * *
2210666 ATAATTTTGTGATTCGGCACTAAAAACACATTCTCCTCATTAGGATAAATAATATTGATGGTTTT
195 TTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATAAATAATATTGATGGTTTT
* * *
2210731 CTTTTGCATGAAAATCTTTTCTTTGCCCAATTTTTCTTAAAATCAAAGTTCATCCCTTAAAAAAG
260 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCCCTTAAAAAAG
* * * * *
2210796 CAAGCATTGATTCTTGCAACAG-CCGCCATTGTTTTCAAGATTGGGAACTAAAAGCACAATCCCT
325 CAAGCTTTGATTCTTGCAACAGTCC-CCATTCTTTTCAAGATTGGGAACCAAAAACACAATCCTT
* * * * *
2210860 TCATTAGGATACAGGACATTGATGCTTTGGTAT-AGTAAGAAAAGTTTTTCTTTCCACTGTTTTT
389 TCATTAGGATACACGACATTGACGCTTTGGTGTCA-TAAGAAAAGGTTTTCTTTCCTCTGTTTTT
*
2210924 GATAGAATCAAAGTATGTCTCT
453 GATAGAATCAAAGTTTGTCTCT
* * * *
2210946 TAAATAAGACAAACATAATAACTCTTTCAAATCCACATTCTTTTCAGGATTTGGTACTATAAACA
1 TAAATAAGACAAACATAATTAGTCTTACAAATCC-CATTCTTTTCAGGATTTGGCACTATAAACA
* * *
2211011 TAGTCTTCTCATTAGGATTGACTAAATTGGTGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACC
65 TAGTCTTCTCAATAGGATAGACTAAATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACC
* * * * * *
2211076 AATCTTTGTAAAGTCTAAGCCCATGCCTTAAG-AGAGACAAACTTAGG-TTCTAGGAATAATCTT
130 AATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTA-AGACAAACAT-GGATTCTAGTAATAATCTT
* *
2211139 CACTT-ATTTTGTGATTATGCACTAAAAACACATTCTCCTCATTAGGATAAA-AGGTATTGATGG
193 CA-TTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATAAATA-ATATTGATGG
* * **
2211202 TTTTCTTTTGAATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTAATCTATTAAA
256 TTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCCCTTAAA
* * * * * *
2211267 TAAGTCAAGCTTTGATTTTTGAAATAGTCCCCATTCTTTTCAAGATT-GGAACCAAAAGCACATT
321 AAAG-CAAGCTTTGATTCTTGCAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACACAAT
* * * * * *
2211331 CCTTTCGTTAGGATGCCCGACATTAACGCTTTGGTGTCATAAGAAAAGGCTTTCTTTCCTCCGTT
385 CCTTTCATTAGGATACACGACATTGACGCTTTGGTGTCATAAGAAAAGGTTTTCTTTCCTCTGTT
* *
2211396 TTTGATAGAATCAATGTTTGTCTTT
450 TTTGATAGAATCAAAGTTTGTCTCT
* ** * * * *
2211421 TAAATAAGGCAAACATGGTTAGTCTTACTAATCTCCATTCTTTACAGGATTT-TCACCATAAACA
1 TAAATAAGACAAACATAATTAGTCTTACAAATC-CCATTCTTTTCAGGATTTGGCACTATAAACA
* * *
2211485 TAGTCTTCTCAATAGGATAGA-TGAAATTGATGATTTAGTTTTGCAAGAAAGTC-TTCTTTCCCA
65 TAGTCTTCTCAATAGGATAGACT-AAATTGATGCTTTGGTTTTGCAAGAAAGGCTTTC-TTCCCA
* *
2211548 CCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAACATGGATTGTAGTAATAATCTT
128 CCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTAAGACAAACATGGATTCTAGTAATAATCTT
* * * * *
2211613 CTTTCATTTTGTAATTAGGTACTAAAAACACATTCTTCTCATTAGGATAAATGATATTGATGGTT
193 CATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATAAATAATATTGATGGTT
* * * * *
2211678 TTGTTTTGCATGAAAATTTTTTCTTTACCCTATTTTCCTTAAAATCAAAACTCATCCCTTAAATA
258 TTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCCCTTAAAAA
* * * *
2211743 AGACAAGCTTTGATTCTTGTAGCAGTCCCCATTATTTTCAAGATTGGAAACCAAAAACAC-ATGC
323 AG-CAAGCTTTGATTCTTGCAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACACAAT-C
* ** * * * * *
2211807 CTTTCGTTTCGATACTCGACATTGACGCTTTGGTGTCATAGGAAAAGGTTTGCTTTCCTCCGATT
386 CTTTCATTAGGATACACGACATTGACGCTTTGGTGTCATAAGAAAAGGTTTTCTTTCCTCTGTTT
2211872 TTGATAGAATCAAAGTTTGTCTCT
451 TTGATAGAATCAAAGTTTGTCTCT
** * * *
2211896 TAAATAAGACAAACATGGTTAGTCTTACCAATCCCTATTCTTTCCATGATTTGGCACTATAAACA
1 TAAATAAGACAAACATAATTAGTCTTACAAATCCC-ATTCTTTTCAGGATTTGGCACTATAAACA
* *
2211961 TAGTCTTCTCAATAGGATAGA-TGAAATTGATGCTTTGGTTTTGCAAGAAAGGTTTTCTTCCCTC
65 TAGTCTTCTCAATAGGATAGACT-AAATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCAC
*
2212025 CAATTTTTGTAAAGTCTAAGTCTATGCCTCGAGTAAGACAAACATGGATTCTAGTAATAATCTTC
129 CAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTAAGACAAACATGGATTCTAGTAATAATCTTC
* * * *
2212090 ATTCATTTTGTGATTCGACACTAAAAACACATTCTCCTCATTAGGATAAATAATATTAATGGCTT
194 ATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATAAATAATATTGATGGTTT
* **
2212155 TCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAATTCATCCCTTAAAAAA
259 TCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCCCTTAAAAAA
* * * * * * *
2212220 GGCAAGCATTGATTCTTGCAACCG-CCGCCTTTCTTTCCAAGATTGGGAACTAAAAACAGATTCC
324 -GCAAGCTTTGATTCTTGCAACAGTCC-CCATTCTTTTCAAGATTGGGAACCAAAAACACAATCC
* * * * *
2212284 GTTT-AATAGGATACAGGACATTGATGCTTTGGTGT-AGTAAGAAAAGTTTTTCTTTCCACTGTT
387 -TTTCATTAGGATACACGACATTGACGCTTTGGTGTCA-TAAGAAAAGGTTTTCTTTCCTCTGTT
*
2212347 TTTGATAGAATCAAAGTATGTCTCT
450 TTTGATAGAATCAAAGTTTGTCTCT
* * *
2212372 TAAATAAGACAAACATAATAAGTCTTTCAAATCCCCATTCTTTTCAGGATTTGGTACTATAAACA
1 TAAATAAGACAAACATAATTAGTCTTACAAAT-CCCATTCTTTTCAGGATTTGGCACTATAAACA
* * *
2212437 TCGTCTTCTC-ATCAGGATTGACTAAATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCGC
65 TAGTCTTCTCAAT-AGGATAGACTAAATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCAC
* * * * * * *
2212501 CAATCTTTGTAAAGTCTAAGCCCATGCCTTAAG-AGAGACAAACTTGGGTTCTAGGAATAATCTT
129 CAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTA-AGACAAACATGGATTCTAGTAATAATCTT
* * *** *
2212565 CACTT-ATTTTGTGATTATGCACTAAAAATACATTCTCCTCATTAGGATAAACGGTATTGATTGT
193 CA-TTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATAAATAATATTGA-TGG
* * * * * **
2212629 TTTTTTTTTGTATGAAAATCTTTTCTTTGCCCTATTTTCTTTCAAATCAAAGCTAATCTATTAAA
256 TTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCCCTTAAA
** * * * * *
2212694 TAATTCAAGCTTTGATTTTTGAAACAATCCCCATTCTTTTCAAGATTGGGAACCAAAAGCACATT
321 -AAAGCAAGCTTTGATTCTTGCAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACACAAT
* * *
2212759 CCTTTCATTAGGATACCCGACATTAACGCTTTGGTGTCATAAGAAAAGGTTTTCTTTCCTCCGTT
385 CCTTTCATTAGGATACACGACATTGACGCTTTGGTGTCATAAGAAAAGGTTTTCTTTCCTCTGTT
*
2212824 TTTGATAGAATCAAAGTTTGTCTTT
450 TTTGATAGAATCAAAGTTTGTCTCT
* * * * * *
2212849 TAAATAAGGCAAACATGATTAGTCTTACTAATCCCCATTCTTTACAAGATTT-GCACTGTAAACA
1 TAAATAAGACAAACATAATTAGTCTTACAAAT-CCCATTCTTTTCAGGATTTGGCACTATAAACA
* * *
2212913 TAGTCTTCTCAATAGGATAGACGAAATTGATGATTTGGTTTTGCAAGAAAGTC-TTCTTTCCCAC
65 TAGTCTTCTCAATAGGATAGACTAAATTGATGCTTTGGTTTTGCAAGAAAGGCTTTC-TTCCCAC
* * *
2212977 CAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTGAGACAGACATTGATTCTAGTAATAATCTTC
129 CAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTAAGACAAACATGGATTCTAGTAATAATCTTC
* * * * *
2213042 TTTCATTTTGCGATTAGGTACTAAAAGCACATTCTCCTCATTAGGATAAATGATATTGATGGTTT
194 ATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATAAATAATATTGATGGTTT
* * *
2213107 TGTTTTGCATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGCTCGTCCCTTAAATAA
259 TCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCCCTTAAA-AA
* * *
2213172 GAG-AAGCTTTGATTCTTGTAGCAGTCCCCATTCTTTTCAAGATTGGAAACCAAAAACAC-ATGC
323 -AGCAAGCTTTGATTCTTGCAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACACAAT-C
* ** * * * *
2213235 CTTTCGTTTCGATACTCGACATTGACGCTTTGGTGTCATAGGAAAAGGTTTGCTTTCCTCTGATT
386 CTTTCATTAGGATACACGACATTGACGCTTTGGTGTCATAAGAAAAGGTTTTCTTTCCTCTGTTT
*
2213300 TTGATAGAATCAAAGTTTGCCTCT
451 TTGATAGAATCAAAGTTTGTCTCT
** * *
2213324 TAAATAAGACAAACATGGTTAGTCTTACCAATCCCTATTCTTTTCATGATTTGGCACTATAAACA
1 TAAATAAGACAAACATAATTAGTCTTACAAATCCC-ATTCTTTTCAGGATTTGGCACTATAAACA
* * *
2213389 TAGTCATCTCAATAGGATAGA-TGAAATTGATGCTTTGGTTTTGCAAGAAAGGTTTTCTTCCCTC
65 TAGTCTTCTCAATAGGATAGACT-AAATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCAC
* * *
2213453 CAATTTTCGTAAAGTGTAAGTCTATGCCTCGAGTAAGACAAACATGGATTCTAGTAATAATCTTC
129 CAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTAAGACAAACATGGATTCTAGTAATAATCTTC
* * *
2213518 ATTCATTTTGAGTTTTGGCACTAAAAACACATTCTCCTCATTAGGATAAATAATATTGATGGCTT
194 ATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATAAATAATATTGATGG-TT
* * *
2213583 TT-TTTTGAATGAAAATCTTTTCTTTGCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAAAA
258 TTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCCCTTAAAAA
* * ** * * *
2213647 AGGCAAGCATTGATTCTTGCAACTG-CCGCTTTTCTTTCCAAGATTGGGAACTAAAAACACATTC
323 A-GCAAGCTTTGATTCTTGCAACAGTCC-CCATTCTTTTCAAGATTGGGAACCAAAAACACAATC
* * * * * * *
2213711 CTTTTAATAGGATATAGGACATTGATGCTTTGGTGT-AGTAAGAAAAGTTTTTCTTTCCACTGTT
386 CTTTCATTAGGATACACGACATTGACGCTTTGGTGTCA-TAAGAAAAGGTTTTCTTTCCTCTGTT
*
2213775 TTTGATAGAATCAAAGTATGTCTCT
450 TTTGATAGAATCAAAGTTTGTCTCT
* * *
2213800 TAAATAAGACAAACATAATAAGTCTTTCAAATCCCCATTCTTTTCAGGATTTGGTACTATAAACA
1 TAAATAAGACAAACATAATTAGTCTTACAAAT-CCCATTCTTTTCAGGATTTGGCACTATAAACA
* * * *
2213865 TAGTCTTCTC-ATCAAGATTGACTAAATTGATACTTTGGTTTTGCAAGAATGGCTTT
65 TAGTCTTCTCAAT-AGGATAGACTAAATTGATGCTTTGGTTTTGCAAGAAAGGCTTT
2213921 TGATGACAAC
Statistics
Matches: 3774, Mismatches: 523, Indels: 171
0.84 0.12 0.04
Matches are distributed among these distances:
458 1 0.00
459 394 0.10
460 12 0.00
471 68 0.02
472 37 0.01
473 8 0.00
474 276 0.07
475 930 0.25
476 1786 0.47
477 257 0.07
478 5 0.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (474 bp):
TAAATAAGACAAACATAATTAGTCTTACAAATCCCATTCTTTTCAGGATTTGGCACTATAAACAT
AGTCTTCTCAATAGGATAGACTAAATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCA
ATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTAAGACAAACATGGATTCTAGTAATAATCTTCAT
TCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATAAATAATATTGATGGTTTTC
TTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCCCTTAAAAAAGC
AAGCTTTGATTCTTGCAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACACAATCCTTTC
ATTAGGATACACGACATTGACGCTTTGGTGTCATAAGAAAAGGTTTTCTTTCCTCTGTTTTTGAT
AGAATCAAAGTTTGTCTCT
Found at i:2218950 original size:42 final size:42
Alignment explanation
Indices: 2218895--2219013 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
2218885 TTCTTCTCTC
* *
2218895 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
2218937 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
2218979 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
2219014 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:2218954 original size:12 final size:11
Alignment explanation
Indices: 2218928--2219003 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
2218918 TCTATTATCT
*
2218928 CTCCTGTCTCTC
1 CTCCTATCTC-C
2218940 CTCCTATCATCC
1 CTCCTATC-TCC
2218952 CTCCTATCT--
1 CTCCTATCTCC
*
2218961 CTACTATCT--
1 CTCCTATCTCC
*
2218970 CTCCTGTCTCTC
1 CTCCTATCTC-C
2218982 CTCCTATCATCC
1 CTCCTATC-TCC
*
2218994 CTCCTCTCTC
1 CTCCTATCTC
2219004 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:2218955 original size:24 final size:24
Alignment explanation
Indices: 2218919--2219004 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
2218909 CCTCCTCTCT
* *
2218919 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
2218943 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
2218964 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
2218985 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
2219005 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:2218979 original size:18 final size:18
Alignment explanation
Indices: 2218910--2218980 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
2218900 CCTGTCATCC
* *
2218910 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
2218928 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
2218950 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
2218970 CTCCTGTCTCT
1 CTCCTGTCTCT
2218981 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:2221896 original size:475 final size:474
Alignment explanation
Indices: 2220910--2222269 Score: 1699
Period size: 472 Copynumber: 2.9 Consensus size: 474
2220900 CTTTCTTTTC
* *
2220910 AAGAAAAGGTTTTT-TTTCCTCCGTTTTTGATAGAATCAAAATTTGTCTTTTAAATAAGGCAAAC
1 AAGAAAA-GTTTTTCTTTCCTCCGTTTTTGATAGAATCAAAATTTGTCTCTTAAATAAGACAAAC
*
2220974 ATGATTAGTCTTACTAATCCCCATTCTTTACAGGATTT-GCACTATAAACATAGTCTTCTCAATA
65 ATGATTAGTCTTACAAATCCCCATTCTTTACAGGATTTGGCACTATAAACATAGTCTTCTCAATA
* *
2221038 GGATAGACGAAATTGATGATTTGGTTTTGCAAGAAA-GTCTTCTTTCCCACCAATTTTTGTAAAG
130 GGATAGACGAAATTGATGCTTTGGTTTTGCAAGAAAGGTTTTC-TTCCCACCAATTTTTGTAAAG
* * *
2221102 TCTAAGTCTATGCCTCAAGTGAGACAAACATTGATTCTAGTAATAATCTTCTTTC--TTTGCGAT
194 TCTAAGTCTATGCCTCAAGTAAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTG-GAT
* * *
2221165 TAGGTACTAAAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTGTTTTGCATGAAA
258 TAGGCACTAAAAACACATTCTCCTCATTAGGATAAATAATATTGATGGTTTTCTTTTGCATGAAA
* * * * *
2221230 ATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAACTCATCCCTTAAATAAGACAAGCTTTGATT
323 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCCATTAAAAAAGACAAGCATTGATT
* * * * * *
2221295 CTTGTAGCAGTCCCCATTCTTTTCAAGATTGGGAACCAAAACACATGCCTTTCGTTCCGATACTC
388 CTTGCAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAACACATGCCCTTCATTACGATACTA
*
2221360 GACATTTACGCCTTGGTGTCAT
453 GACATTGACGCCTTGGTGTCAT
* * * * * *
2221382 AGGAAAAGGTTTGCTTTCTTCCGATTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
1 AAGAAAAGTTTTTCTTTCCTCCGTTTTTGATAGAATCAAAATTTGTCTCTTAAATAAGACAAACA
* * * * *
2221447 TGGTTAGTCTTACCAATCCCTATTCTTTCCATGATTTGGCACTATAAACATAGTCTTCTCAATAG
66 TGATTAGTCTTACAAATCCCCATTCTTTACAGGATTTGGCACTATAAACATAGTCTTCTCAATAG
* * * *
2221512 GATAGACGAAATTGATGCTTTGGTTTTGCAAGAAAGGTTTTCTTGCCTCTAATTTTTGTAAATTC
131 GATAGACGAAATTGATGCTTTGGTTTTGCAAGAAAGGTTTTCTTCCCACCAATTTTTGTAAAGTC
* *
2221577 TAAGTCTATGCCTCGAGTAAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGGAATTC
196 TAAGTCTATGCCTCAAGTAAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGG-ATTA
*
2221642 GGCACTAAAAACACATTCTCCTCATTAGGATAAATAATATTTATGGTTTTCTTTTGCATGAAAAT
260 GGCACTAAAAACACATTCTCCTCATTAGGATAAATAATATTGATGGTTTTCTTTTGCATGAAAAT
* *
2221707 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCATTAAAAAAGGCAAGCATTGATTCT
325 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCCATTAAAAAAGACAAGCATTGATTCT
* * * *
2221772 TGCAACAG-CAGCCATTGTTTTCAAGATTGGGAACTAAAAGCACAAT-CCCTTCATTAGGATAC-
390 TGCAACAGTC-CCCATTCTTTTCAAGATTGGGAACCAAAA-CAC-ATGCCCTTCATTACGATACT
* * **
2221834 AGAACATTGATGCTTTGGTGTTGT
452 AG-ACATTGACGCCTTGGTGTCAT
* *
2221858 AAGAAAAGTTTTTCTTTCCACCGTTTTTGATA-AATCAAAATATGTCTCTTAAATAAGACAAACA
1 AAGAAAAGTTTTTCTTTCCTCCGTTTTTGATAGAATCAAAATTTGTCTCTTAAATAAGACAAACA
* ** * * * * *
2221922 TAACAAGTCTTTCAAATCCCCATTCTTTTCAGGATTTGGTACTATAAACGTAG---TCTCATTAG
66 TGATTAGTCTTACAAATCCCCATTCTTTACAGGATTTGGCACTATAAACATAGTCTTCTCAATAG
* * * * *
2221984 GATTGACCAAATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCGCCAATCTTTGTAAAGTC
131 GATAGACGAAATTGATGCTTTGGTTTTGCAAGAAAGGTTTTCTTCCCACCAATTTTTGTAAAGTC
* * * * * * *
2222049 TAAGCCAATGCCTTAAG-AGAGACAAACTTGGGTTCTAGGAATAATCTTCACTT-ATTTTTTGAT
196 TAAGTCTATGCCTCAAGTA-AGACAAACATGGATTCTAGTAATAATCTTCA-TTCA-TTTTGGAT
* * * *
2222112 TATGCACTAAAAACACATTCTCCTCATTAGGATAAA-AGGTATTGATGGTTTTTTTTTTTGTATG
258 TAGGCACTAAAAACACATTCTCCTCATTAGGATAAATA-ATATTGATGG--TTTTCTTTTGCATG
* * * ** *
2222176 AAAATCTTTTCTTTGCCCTATTTTCCTTCAAATCAAAGCTAATCTC-TTAAATAATTCAAGCTTT
320 AAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATC-CATTAAAAAAGACAAGCATT
* * *
2222240 GATTTTTGAAACAGTCCCCATTCTTCTCAA
384 GATTCTTGCAACAGTCCCCATTCTTTTCAA
2222270 TAGGATAGAC
Statistics
Matches: 766, Mismatches: 104, Indels: 34
0.85 0.12 0.04
Matches are distributed among these distances:
471 6 0.01
472 235 0.31
473 136 0.18
474 97 0.13
475 233 0.30
476 57 0.07
477 2 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (474 bp):
AAGAAAAGTTTTTCTTTCCTCCGTTTTTGATAGAATCAAAATTTGTCTCTTAAATAAGACAAACA
TGATTAGTCTTACAAATCCCCATTCTTTACAGGATTTGGCACTATAAACATAGTCTTCTCAATAG
GATAGACGAAATTGATGCTTTGGTTTTGCAAGAAAGGTTTTCTTCCCACCAATTTTTGTAAAGTC
TAAGTCTATGCCTCAAGTAAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGGATTAG
GCACTAAAAACACATTCTCCTCATTAGGATAAATAATATTGATGGTTTTCTTTTGCATGAAAATC
TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCCATTAAAAAAGACAAGCATTGATTCTT
GCAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAACACATGCCCTTCATTACGATACTAGAC
ATTGACGCCTTGGTGTCAT
Found at i:2223037 original size:476 final size:476
Alignment explanation
Indices: 2222261--2227832 Score: 7419
Period size: 476 Copynumber: 11.7 Consensus size: 476
2222251 CAGTCCCCAT
* *
2222261 TCTTCTCAATAGGATAGACGAAATTGATGC-TTTGGTTTTGTAAGAAAGGT-TTTCTT-CCATCA
1 TCTTCTCAATAGGATAGACGAAATTGATGCTTTTGG-TTTGCAAGAAA-GTCTTTCTTCCCACCA
* * *
2222323 ATTTTTGTAAAGTCTAAGTCTAGGCCTCAGGTGAGACAAATATGGGTTCTAGTAATAA-CTTTCA
64 ATTTTTGTAAAGTCTAAGTCTAGGCCTCAAGTGAGACAAACATGGATTCTAGTAATAATCTTTCA
2222387 TTCATTTTGTGATTCGGCACTAAAAACACATTCTCCTCATTAGGATAAATAATATTGATGGTTTT
129 TTCATTTTGTGATTCGGCACTAAAAACACATTCTCCTCATTAGGATAAATAATATTGATGGTTTT
* * * * * * *
2222452 CTTTTGTATGAAATTCTTTTCTTTGCCCTATTTCCCTTAAAATCAAAGTTTATGCCGTAAATACA
194 CTTTTGCATGAAATTCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCCCTTAAA-AAA
* * *
2222517 -GCAAGCATTGATTCTTGTAACAGTCTCTACTT-TTTTCAAGATTGGGAACCAAAAACACATTCC
258 GGCAAGCTTTGATTCTTGTAACAGTCCCCA-TTCTTTTCAAGATTGGGAACCAAAAACACATTCC
** ** ** ** * *
2222580 TTTTATTAGGATACATGACATTGACACTTTGGCATCGCAGGAAAAGG-TTTCCTTCCTCCGTTTT
322 TTTCGTTAGGATACCCGACATTGACACTTTGGTGTCAAAAGAAAAGGTTTTCTTTCCTCCGTTTT
*
2222644 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACTAATCCTCATTCTT
387 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACCAATCC-CATTCTT
**
2222709 TTTTGGATTTGGCACTATAAACATAG
451 TTCAGGATTTGGCACTATAAACATAG
* * * *
2222735 TTTTCTCAATAGGATAGACGAAATTGATGCTTTTGCTTTGTAAGAAAGTCTTTCATCCCACCAAT
1 TCTTCTCAATAGGATAGACGAAATTGATGCTTTTGGTTTGCAAGAAAGTCTTTCTTCCCACCAAT
* * * *
2222800 TTTTGGTAAAGTCTAAGTTTATGCCTCAAGAGAGACAAACAAGGATTCTAGTAATAATCTTT-AT
66 TTTT-GTAAAGTCTAAGTCTAGGCCTCAAGTGAGACAAACATGGATTCTAGTAATAATCTTTCAT
** * *
2222864 TCATTTTGTGATTAAGCACTAAAAACACATTCTCCTCATTAGGATAAA-AGGTATTGATGGTTTA
130 TCATTTTGTGATTCGGCACTAAAAACACATTCTCCTCATTAGGATAAATA-ATATTGATGGTTTT
2222928 CTTTTGCATGAAATTCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCCCTTAAAAAAG
194 CTTTTGCATGAAATTCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCCCTTAAAAAAG
*
2222993 GCAAGCTTTGATTCTTGTAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACATATTCCTT
259 GCAAGCTTTGATTCTTGTAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTT
* *
2223058 TCGTTAGGATACCCGACATTGACATTTTGGTGTCAAAAGAAAAGGTTTTCTTTCCTCCGTTTTTT
324 TCGTTAGGATACCCGACATTGACACTTTGGTGTCAAAAGAAAAGGTTTTCTTTCCTCCGTTTTTG
* * *
2223123 ATAGAATCAAAGTTTGTTTCTTAAATAAGACAAACATGATTAGTCTTACCGATCCCTATTCTCTT
389 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACCAATCCC-ATTCTTTT
*
2223188 CCGGATTTGGCACTATAAACATAG
453 CAGGATTTGGCACTATAAACATAG
* * *
2223212 TCCTCTCAATAGGATAGACGAAATTGATGC-TTTGGTTTTGTAAGAAAGGT-TTTCTT-CCATCA
1 TCTTCTCAATAGGATAGACGAAATTGATGCTTTTGG-TTTGCAAGAAA-GTCTTTCTTCCCACCA
* *
2223274 ATTTTTGTAAAGTCTAAGTCTAGGCCTCATGTGAGACAAACATGGGTTCTAGTAATAAT-TTTCA
64 ATTTTTGTAAAGTCTAAGTCTAGGCCTCAAGTGAGACAAACATGGATTCTAGTAATAATCTTTCA
2223338 TTCATTTTGTGATTCGGCACTAAAAACACATTCTCCTCATTAGGATAAATAATATTGATGGTTTT
129 TTCATTTTGTGATTCGGCACTAAAAACACATTCTCCTCATTAGGATAAATAATATTGATGGTTTT
* * * * * *
2223403 CTTTTGTATGAAATTCTTTTCTTTGCCCTATTTCCCTTAAAATCAAAGTTTATGCCGTAAATAAA
194 CTTTTGCATGAAATTCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCCCTTAAA-AAA
* * * * *
2223468 -GCAAGCATTGATTCTTGGAACAGTCTCTACTT-TTTTCAAGATTAGGAACCAAAAACACATTCC
258 GGCAAGCTTTGATTCTTGTAACAGTCCCCA-TTCTTTTCAAGATTGGGAACCAAAAACACATTCC
** ** ** ** * *
2223531 TTTTATTAGGATACATGACATTGACACTTTGGCATCGCAGGAAAAGG-TTTCCTTCCTCCGTTTT
322 TTTCGTTAGGATACCCGACATTGACACTTTGGTGTCAAAAGAAAAGGTTTTCTTTCCTCCGTTTT
*
2223595 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACCGATCCCTATTCTT
387 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACCAATCCC-ATTCTT
2223660 TTCAGGATTTGGCACTATAAACATAG
451 TTCAGGATTTGGCACTATAAACATAG
* * *
2223686 TCTTCTCAATAGGATAGACGAAATTGATGCTTTTGCTTTGTAAGAAAGTCTTTCATCCCACCAAT
1 TCTTCTCAATAGGATAGACGAAATTGATGCTTTTGGTTTGCAAGAAAGTCTTTCTTCCCACCAAT
* * *
2223751 TTTTGGTAAAGTCTAAGTCTATGCCTCAAGAGAGACAAACAAGGATTCTAGTAATAATCTTT-AT
66 TTTT-GTAAAGTCTAAGTCTAGGCCTCAAGTGAGACAAACATGGATTCTAGTAATAATCTTTCAT
** *
2223815 TCATTTTGTGATTAAGCACTAAAAACACATTCTCCTCATTAGGATAAA-AGGTATTGATGGTTTT
130 TCATTTTGTGATTCGGCACTAAAAACACATTCTCCTCATTAGGATAAATA-ATATTGATGGTTTT
*
2223879 CATTTGCATGAAATTCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCCCTTAAAAAAG
194 CTTTTGCATGAAATTCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCCCTTAAAAAAG
* *
2223944 GCAAGCTTTGATTCTTGTAACAGTCCCCATTCTTTTCAAGACTGGGAACCAAAAACATATTCCTT
259 GCAAGCTTTGATTCTTGTAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTT
* * *
2224009 TCGTTAGGATACCCGACATTGACATTTTTGTGTCAAAAGAAAAGGTTTTCTTTCCTCCGTTTTTT
324 TCGTTAGGATACCCGACATTGACACTTTGGTGTCAAAAGAAAAGGTTTTCTTTCCTCCGTTTTTG
* * *
2224074 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTAGCGATCCTTATTCTTTT
389 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACCAATCC-CATTCTTTT
2224139 CCA-GATTTGGCACTATAAACATAG
453 -CAGGATTTGGCACTATAAACATAG
* * * * *
2224163 TCTTCTCAATAGGATAGACGAAACTGATGCTTTAGTTTTGCAAGAAAGGT-TTTCTGCCCATCAA
1 TCTTCTCAATAGGATAGACGAAATTGATGCTTTTGGTTTGCAAGAAA-GTCTTTCTTCCCACCAA
2224227 TTTTTGTAAAGTCTAAGTCTAGGCCTCAAGTGAGACAAACATGGATTCTAGTAATAAT-TTTCAT
65 TTTTTGTAAAGTCTAAGTCTAGGCCTCAAGTGAGACAAACATGGATTCTAGTAATAATCTTTCAT
*
2224291 TCATTTTGTGATTCGGCACTAAAAACACATTCTCCTCATTAGGATAAATAATATTTATGGTTTTC
130 TCATTTTGTGATTCGGCACTAAAAACACATTCTCCTCATTAGGATAAATAATATTGATGGTTTTC
* * * * * * * *
2224356 TTTTGTATGAAATTCCTTTCTTTGCCCTATTTCCCTTAAAATCAAAGTTTATGCCGTAAATACA-
195 TTTTGCATGAAATTCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCCCTTAAA-AAAG
* * * *
2224420 GCAAGCATTGATTCTTGTAACAGTCTCTACTT-TTTTCAAGATTGGGAACCAAAAACACTTTCCC
259 GCAAGCTTTGATTCTTGTAACAGTCCCCA-TTCTTTTCAAGATTGGGAACCAAAAACACATT-CC
* ** ** *** * *
2224484 TTT-ATTAGGATACATGACATTGACACTTTGGCATTGCAGGAAAAGG-TTTCCTTCCTCCGTTTT
322 TTTCGTTAGGATACCCGACATTGACACTTTGGTGTCAAAAGAAAAGGTTTTCTTTCCTCCGTTTT
* *
2224547 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACCAGTCCCGGTTCTT
387 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACCAATCCC-ATTCTT
2224612 TTCAGGATTTGGCACTATAAACATAG
451 TTCAGGATTTGGCACTATAAACATAG
* * ** * * *
2224638 TCTTCTCATTAGGATGGGTGAAATTGTTG-ATTTGGTTTCGCAAGAAAGTCTTTCTTCCCACTAA
1 TCTTCTCAATAGGATAGACGAAATTGATGCTTTTGGTTT-GCAAGAAAGTCTTTCTTCCCACCAA
* * * *
2224702 TTTTTCTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAACTTAGATTCTAGTAATAATC-TTCAT
65 TTTTTGTAAAGTCTAAGTCTAGGCCTCAAGTGAGACAAACATGGATTCTAGTAATAATCTTTCAT
* * *
2224766 TCATTTTGTGATTAGGCACT-AAAACACATTCTCCTCATTAGGATAAA-AGGTATTGTTGGTTTT
130 TCATTTTGTGATTCGGCACTAAAAACACATTCTCCTCATTAGGATAAATA-ATATTGATGGTTTT
* * *
2224829 ATTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCCCTTAAATAAG
194 CTTTTGCATGAAATTCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCCCTTAAAAAAG
* * * *
2224894 GCATGCTTTGATTCTTGTAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACCCATACTTT
259 GCAAGCTTTGATTCTTGTAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTT
* * ** * * *
2224959 TCTTTAGGATACCCGACATTAATGCTTTGGTGTCAAAGGAAAAGGTTTTCTTTCCTCTGTTTTTA
324 TCGTTAGGATACCCGACATTGACACTTTGGTGTCAAAAGAAAAGGTTTTCTTTCCTCCGTTTTTG
*
2225024 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACTAATCCTCATTCTTTT
389 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACCAATCC-CATTCTTTT
* *
2225089 CTGGATTTGGCACTATAAATATAG
453 CAGGATTTGGCACTATAAACATAG
* * * * *
2225113 TCTTCTCATTAGCATGGGCGAAATTGATGC-TTTGGTTTCGCAAGAAAGTCTTTCTTCCCACTAA
1 TCTTCTCAATAGGATAGACGAAATTGATGCTTTTGGTTT-GCAAGAAAGTCTTTCTTCCCACCAA
* * * * * *
2225177 ATTTTCTAGAGTCTAAGTCTATGCCTCAAGTGAGAGAAACTTGGATTCTAGTAATAATC-TTCAT
65 TTTTTGTAAAGTCTAAGTCTAGGCCTCAAGTGAGACAAACATGGATTCTAGTAATAATCTTTCAT
* * *
2225241 TCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATAAA-AGGTATTTATGGTTTT
130 TCATTTTGTGATTCGGCACTAAAAACACATTCTCCTCATTAGGATAAATA-ATATTGATGGTTTT
* * * *
2225305 ATTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCTCTTAAATAAG
194 CTTTTGCATGAAATTCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCCCTTAAAAAAG
* * * *
2225370 GCATGCTTTGATTCTTGTAACAGTCCCCGTTCTTTTCAAGATTGGGAACCAAAAACCCATACCTT
259 GCAAGCTTTGATTCTTGTAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTT
* ** * *
2225435 TCGTTAGGATACCCGACATTAATGCTTTGGTGTCAAAGGAAAAGGTTTTCTTTCCTCCATTTTTG
324 TCGTTAGGATACCCGACATTGACACTTTGGTGTCAAAAGAAAAGGTTTTCTTTCCTCCGTTTTTG
* *
2225500 ATAGAATCAAAGTTTGTCTCTTAAATAAAACAAACATGATTAGTCTTACCGATCCCTATTCTTTT
389 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACCAATCCC-ATTCTTTT
*
2225565 CAGGATTTGGCTCTATAAACATAG
453 CAGGATTTGGCACTATAAACATAG
* * *
2225589 TCTTCTCAATAGGATAGACGAAATTGATGCTTTCGTTTTGCAAGAAAGGT-TTTCTTCCCATCAA
1 TCTTCTCAATAGGATAGACGAAATTGATGCTTTTGGTTTGCAAGAAA-GTCTTTCTTCCCACCAA
* *
2225653 TTTTTGTAAAGTCTAAGTCTAGGCCTCAAGTGAGACAAACATGGGTTCTAATAATAATC-TTCAT
65 TTTTTGTAAAGTCTAAGTCTAGGCCTCAAGTGAGACAAACATGGATTCTAGTAATAATCTTTCAT
*
2225717 TCATTTTGTGATTCGGCACTAAAAACACATTCTCCTCATTAGGATAAATAATATTGATGGGTTTC
130 TCATTTTGTGATTCGGCACTAAAAACACATTCTCCTCATTAGGATAAATAATATTGATGGTTTTC
* * * * * * *
2225782 -TTTGTATGAAAATCTTTTCTTTGCCCTATTTCCCTTAAAATCAAAGTTTAT-GCTGT-AAATAG
195 TTTTGCATGAAATTCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCCCT-TAAAAAAG
* * *
2225844 AGCAAGCATTGATTCTTGTAACAGTCTCTACTT-TTTTCAAGATTGGGAACCAAAAACACATTCC
259 -GCAAGCTTTGATTCTTGTAACAGTCCCCA-TTCTTTTCAAGATTGGGAACCAAAAACACATTCC
* * * ** * *** *
2225908 CTTCATTATGATACATGACATTGGCACTTTGGTGTGGCAAGAAAAGG-TTTCCTTCCTCCGTTTT
322 TTTCGTTAGGATACCCGACATTGACACTTTGGTGTCAAAAGAAAAGGTTTTCTTTCCTCCGTTTT
*
2225972 TGATAGAATCAAAGTTTGTCTCTTAAATAATACAAACATGATTAGTCTTACCAATCCCGATTCTT
387 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACCAATCCC-ATTCTT
2226037 TTCAGGATTTGGCACTATAAACATAG
451 TTCAGGATTTGGCACTATAAACATAG
* * * *
2226063 TCTTCTCATTAGGATGGGCGAAATTGATGC-TTTGGTTTCGCAAGAAAGTCTTTCTTCCCACTAA
1 TCTTCTCAATAGGATAGACGAAATTGATGCTTTTGGTTT-GCAAGAAAGTCTTTCTTCCCACCAA
* * *
2226127 TTTTTCTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAACTTGGATTCTAGTAATAATC-TTCAT
65 TTTTTGTAAAGTCTAAGTCTAGGCCTCAAGTGAGACAAACATGGATTCTAGTAATAATCTTTCAT
* * *
2226191 TCATTTTGTGATTAGGCACTAAAAACACATTCACCTCATTAGGATAAA-AGGTATTGATGGTTTT
130 TCATTTTGTGATTCGGCACTAAAAACACATTCTCCTCATTAGGATAAATA-ATATTGATGGTTTT
* * * * *
2226255 ATTTTGCATGAAAATCTTTTCTGTGCCCTATTTTCCTTAAAATCAAAGCTCATCCCTTAAATAAT
194 CTTTTGCATGAAATTCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCCCTTAAAAAAG
* * * * * * *
2226320 ACAAGCTTTGATTCTTGCAACAGTCTCCATTCTTCTCAGGATTGGGAACTAAAAACACATTCCCT
259 GCAAGCTTTGATTCTTGTAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTT
* * ** *** * * *
2226385 TCATTAGGGTACAAGACATTGGTGCTTTGGTGT-AGTAAGAAAAGTTTTTCTTTCCACCGTTTTT
324 TCGTTAGGATACCCGACATTGACACTTTGGTGTCA-AAAGAAAAGGTTTTCTTTCCTCCGTTTTT
** * * * * * * * * *
2226449 GATAGAATCAAAGTACGCCTCCTACATAAGACAAATACGATAAGTTTTTCTAATCCCCATTCTTT
388 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACCAAT-CCCATTCTTT
*
2226514 TCAGGATTTGGCACTATAAATATAG
452 TCAGGATTTGGCACTATAAACATAG
* * * * *
2226539 TCTTCTCATTAGGATTGACTAAATTGATGC-TTTGTTTTTGCAAGAAAGGCTTTCTTCCCACCAA
1 TCTTCTCAATAGGATAGACGAAATTGATGCTTTTG-GTTTGCAAGAAAGTCTTTCTTCCCACCAA
* * * * * * *
2226603 TCTTCGTAAAGTCTAAGCCCATGCCTCAGGTGAGACAAACATGGGTTCTAGTAATAAT-TTTCAT
65 TTTTTGTAAAGTCTAAGTCTAGGCCTCAAGTGAGACAAACATGGATTCTAGTAATAATCTTTCAT
* * *
2226667 TCATTTTGTAATTTGGCACTAAAAACACATTCTCCTCATTAGGATAAA-AGGTATTGATGGTTTT
130 TCATTTTGTGATTCGGCACTAAAAACACATTCTCCTCATTAGGATAAATA-ATATTGATGGTTTT
*
2226731 CTTTTGGATGAAATTCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCCCTTAAAAAAG
194 CTTTTGCATGAAATTCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCCCTTAAAAAAG
* * *
2226796 GCAAGCTTTGATTCTTATAACAGTCCCCATTCTTTTCAAGACTGGGAACCAAAAACATATTCCTT
259 GCAAGCTTTGATTCTTGTAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTT
** *
2226861 TCGTTAGGATACCCGACATTGACGTTTTGGTGTCAAAAGAAAAGGTTTTCTTTCCTCCGTTTTTT
324 TCGTTAGGATACCCGACATTGACACTTTGGTGTCAAAAGAAAAGGTTTTCTTTCCTCCGTTTTTG
* * * * *
2226926 ATAAAATCAAAGTTT-TCT-TCTAAATAAGACAAACACGAATAGTCTTGCTAATCCCTAATTCTT
389 ATAGAATCAAAGTTTGTCTCT-TAAATAAGACAAACATGATTAGTCTTACCAATCCC--ATTCTT
*
2226989 TTCAGGATTTGGCACTGTAAACATAG
451 TTCAGGATTTGGCACTATAAACATAG
* * * *
2227015 TCTTCTCATTAGGATAGGA-AAAATTGACGC-TTTGGTTTCGCAAGAAAGTCTTTCTTCCCACTA
1 TCTTCTCAATAGGATA-GACGAAATTGATGCTTTTGGTTT-GCAAGAAAGTCTTTCTTCCCACCA
* *
2227078 ATTTTTCTAAAGTCTAAGTCTAGGCCTCAGGTGAGACAAACAT-GAGTTCTAGTAATAAT-TTTC
64 ATTTTTGTAAAGTCTAAGTCTAGGCCTCAAGTGAGACAAACATGGA-TTCTAGTAATAATCTTTC
2227141 ATTCATTTTGTGATTCGGCACTAAAAACACATTCTCCTCATTAGGATAAATAATATTGATGGTTT
128 ATTCATTTTGTGATTCGGCACTAAAAACACATTCTCCTCATTAGGATAAATAATATTGATGGTTT
*
2227206 TCTTTTGCATGAAATTCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCTCTTAAAAAA
193 TCTTTTGCATGAAATTCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCCCTTAAAAAA
* * *
2227271 GGCAAGCTTTGATTCTTATAACAGTCCCCATTCTTTTCAAGACTGGGAACCAAAAACATATTCCT
258 GGCAAGCTTTGATTCTTGTAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCT
*
2227336 TTCGTTAGGATACCCGACATTGACATTTTGGTGTCAAAAGAAAAGGTTTTCTTTCCTCCGTTTTT
323 TTCGTTAGGATACCCGACATTGACACTTTGGTGTCAAAAGAAAAGGTTTTCTTTCCTCCGTTTTT
* * * * *
2227401 TATAGAATCAAAGTTT-TCT-TCTAAATAAGACAAACACGAATAGTCTTGCTAATCCCTAATTCT
388 GATAGAATCAAAGTTTGTCTCT-TAAATAAGACAAACATGATTAGTCTTACCAATCCC--ATTCT
2227464 TTTCAGGATTTGGCACTATAAACATAG
450 TTTCAGGATTTGGCACTATAAACATAG
* * * *
2227491 TCTTCTCATTAGGATAGGA-AAAATTGACGC-TTTGGTTTCGCAAGAAAGTCTTTCTTCCCACTA
1 TCTTCTCAATAGGATA-GACGAAATTGATGCTTTTGGTTT-GCAAGAAAGTCTTTCTTCCCACCA
*
2227554 ATTTTTCTAAAGTCTAAGTCTAGGCCTCAAGTGAGACAAACATGGATTCTAGTAATAAT-TTTCA
64 ATTTTTGTAAAGTCTAAGTCTAGGCCTCAAGTGAGACAAACATGGATTCTAGTAATAATCTTTCA
2227618 TTCATTTTGTGATTCGGCACTAAAAACACATTCTCCTCATTAGGATAAATAATATTGATGGTTTT
129 TTCATTTTGTGATTCGGCACTAAAAACACATTCTCCTCATTAGGATAAATAATATTGATGGTTTT
* * * * * * * *
2227683 CTTTTGTATAAAATTCTTTTCTTTGCCCTATTTCCCTTAAAATCAAAGTTTATGCCATAAATACA
194 CTTTTGCATGAAATTCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCCCTTAAA-AAA
* * * * *
2227748 -GCAAGCATTGATTCTTGTAACAGTCTCTATAT-TTTTCAAGATTGGGAACCAAAAACCCATACC
258 GGCAAGCTTTGATTCTTGTAACAGTCCCCAT-TCTTTTCAAGATTGGGAACCAAAAACACATTCC
2227811 TTTCGTTAGGATACCCGACATT
322 TTTCGTTAGGATACCCGACATT
2227833 AATGCTTTGG
Statistics
Matches: 4562, Mismatches: 460, Indels: 150
0.88 0.09 0.03
Matches are distributed among these distances:
473 21 0.00
474 656 0.14
475 1058 0.23
476 2479 0.54
477 342 0.07
478 6 0.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.37
Consensus pattern (476 bp):
TCTTCTCAATAGGATAGACGAAATTGATGCTTTTGGTTTGCAAGAAAGTCTTTCTTCCCACCAAT
TTTTGTAAAGTCTAAGTCTAGGCCTCAAGTGAGACAAACATGGATTCTAGTAATAATCTTTCATT
CATTTTGTGATTCGGCACTAAAAACACATTCTCCTCATTAGGATAAATAATATTGATGGTTTTCT
TTTGCATGAAATTCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCCCTTAAAAAAGGC
AAGCTTTGATTCTTGTAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTC
GTTAGGATACCCGACATTGACACTTTGGTGTCAAAAGAAAAGGTTTTCTTTCCTCCGTTTTTGAT
AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACCAATCCCATTCTTTTCAG
GATTTGGCACTATAAACATAG
Found at i:2224103 original size:951 final size:951
Alignment explanation
Indices: 2222261--2238102 Score: 18223
Period size: 951 Copynumber: 16.6 Consensus size: 951
2222251 CAGTCCCCAT
* * *
2222261 TCTTCTCAATAGGATAGACGAAATTGATGCTTTGGTTTTGTAAGAAAGGTTTTCTT-CCATCAAT
1 TCTTCTCATTAGGATAGACGAAATTGATGCTTTGGTTTTGCAAGAAAGGTTTTCTTCCCACCAAT
* * *
2222325 TTTTGTAAAGTCTAAGTCTAGGCCTCAGGTGAGACAAATATGGGTTCTAGTAATAA-CTTTCATT
66 TTTTGTAAAGTCTAAGTCTAGGCCTCAAGTGAGACAAACATGGATTCTAGTAATAATC-TTCATT
*
2222389 CATTTTGTGATTCGGCACTAAAAACACATTCTCCTCATTAGGATAAATAATATTGATGGTTTTCT
130 CATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATAAATAATATTGATGGTTTTCT
* * * * * * *
2222454 TTTGTATGAAATTCTTTTCTTTGCCCTATTTCCCTTAAAATCAAAGTTTATGCCGTAAATACAGC
195 TTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAAGC
*
2222519 AAGCATTGATTCTTGTAACAGTCTCTACTT-TTTTCAAGATTGGGAACCAAAAACACATTCCTTT
260 AAGCATTGATTCTTGTAACAGTCTCCA-TTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTT
* * ** * *
2222583 TATTAGGATACATGACATTGACACTTTGGCATCGCAGGAAAAGGTTTCCTTCCTCCGTTTTTGAT
324 CATTAGGATACATGACATTGACGCTTTGGTGTCGCAAGAAAAGGTTTCTTTCCTCCGTTTTTGAT
*
2222648 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACTAAT-CCTCATTCTTTTT
389 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACTAATCCCT-ATTCTTTTC
* * * * *
2222712 TGGATTTGGCACTATAAACATAGTTTTCTCAATAGGATAGACGAAATTGATGCTTTTGCTTTGTA
453 AGGATTTGGCACTATAAACATAGTCTTCTCATTAGGATAGACGAAATTGATGCTTTTGGTTTGCA
* * * *
2222777 AGAAAGTCTTTCATCCCACCAATTTTTGGTAAAGTCTAAGTTTATGCCTCAAGAGAGACAAACAA
518 AGAAAGTCTTTCTTCCCACCAATTTTT-GTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAACAT
* *
2222842 GGATTCTAGTAATAATCTTTATTCATTTTGTGATTAAGCACTAAAAACACATTCTCCTCATTAGG
582 GGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGG
* *
2222907 ATAAAAGGTATTGATGGTTTACTTTTGCATGAAATTCTTTTCTTTGCCCTATTTTCCTTAAAATC
647 ATAAAAGATATTGATGGTTTTCTTTTGCATGAAATTCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * *
2222972 AAAGCTCATCCCTTAAAAAAGGCAAGCTTTGATTCTTGTAACAGTCCCCATTCTTTTCAAGATTG
712 AAAGTTCATCCCTTAAAAAAGGCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTG
* ** * **
2223037 GGAACCAAAAACATATTCCTTTCGTTAGGATACCCGACATTGACATTTTGGTGTCAAAAGAAAAG
777 GGAACCAAAAACACATTCCTTTCGTTAGGATACATGACATTGACACTTTGGTGTCGCAAGAAAAG
* *
2223102 GTTTTCTTTCCTCCGTTTTTTATAGAATCAAAGTTTGTTTCTTAAATAAGACAAACATGATTAGT
842 GTTTTCTTTCCTCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGT
** * *
2223167 CTTACCGATCCCTATTCTCTTCCGGATTTGGCACTATAAACATAG
907 CTTACTAATCCCTATTCTTTTCAGGATTTGGCACTATAAACATAG
* * * *
2223212 TCCTCTCAATAGGATAGACGAAATTGATGCTTTGGTTTTGTAAGAAAGGTTTTCTT-CCATCAAT
1 TCTTCTCATTAGGATAGACGAAATTGATGCTTTGGTTTTGCAAGAAAGGTTTTCTTCCCACCAAT
* * *
2223276 TTTTGTAAAGTCTAAGTCTAGGCCTCATGTGAGACAAACATGGGTTCTAGTAATAATTTTCATTC
66 TTTTGTAAAGTCTAAGTCTAGGCCTCAAGTGAGACAAACATGGATTCTAGTAATAATCTTCATTC
*
2223341 ATTTTGTGATTCGGCACTAAAAACACATTCTCCTCATTAGGATAAATAATATTGATGGTTTTCTT
131 ATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATAAATAATATTGATGGTTTTCTT
* * * * * *
2223406 TTGTATGAAATTCTTTTCTTTGCCCTATTTCCCTTAAAATCAAAGTTTATGCCGTAAATAAAGCA
196 TTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAAGCA
* * * *
2223471 AGCATTGATTCTTGGAACAGTCTCTACTT-TTTTCAAGATTAGGAACCAAAAACACATTCCTTTT
261 AGCATTGATTCTTGTAACAGTCTCCA-TTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTC
* ** * *
2223535 ATTAGGATACATGACATTGACACTTTGGCATCGCAGGAAAAGGTTTCCTTCCTCCGTTTTTGATA
325 ATTAGGATACATGACATTGACGCTTTGGTGTCGCAAGAAAAGGTTTCTTTCCTCCGTTTTTGATA
**
2223600 GAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACCGATCCCTATTCTTTTCAG
390 GAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACTAATCCCTATTCTTTTCAG
* * *
2223665 GATTTGGCACTATAAACATAGTCTTCTCAATAGGATAGACGAAATTGATGCTTTTGCTTTGTAAG
455 GATTTGGCACTATAAACATAGTCTTCTCATTAGGATAGACGAAATTGATGCTTTTGGTTTGCAAG
* * *
2223730 AAAGTCTTTCATCCCACCAATTTTTGGTAAAGTCTAAGTCTATGCCTCAAGAGAGACAAACAAGG
520 AAAGTCTTTCTTCCCACCAATTTTT-GTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAACATGG
* *
2223795 ATTCTAGTAATAATCTTTATTCATTTTGTGATTAAGCACTAAAAACACATTCTCCTCATTAGGAT
584 ATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGAT
* *
2223860 AAAAGGTATTGATGGTTTTCATTTGCATGAAATTCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
649 AAAAGATATTGATGGTTTTCTTTTGCATGAAATTCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
* * * *
2223925 AGCTCATCCCTTAAAAAAGGCAAGCTTTGATTCTTGTAACAGTCCCCATTCTTTTCAAGACTGGG
714 AGTTCATCCCTTAAAAAAGGCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGG
* ** * * **
2223990 AACCAAAAACATATTCCTTTCGTTAGGATACCCGACATTGACATTTTTGTGTCAAAAGAAAAGGT
779 AACCAAAAACACATTCCTTTCGTTAGGATACATGACATTGACACTTTGGTGTCGCAAGAAAAGGT
*
2224055 TTTCTTTCCTCCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCT
844 TTTCTTTCCTCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCT
* *
2224120 TAGC-GATCCTTATTCTTTTCCA-GATTTGGCACTATAAACATAG
909 TA-CTAATCCCTATTCTTTT-CAGGATTTGGCACTATAAACATAG
* * * * *
2224163 TCTTCTCAATAGGATAGACGAAACTGATGCTTTAGTTTTGCAAGAAAGGTTTTCTGCCCATCAAT
1 TCTTCTCATTAGGATAGACGAAATTGATGCTTTGGTTTTGCAAGAAAGGTTTTCTTCCCACCAAT
*
2224228 TTTTGTAAAGTCTAAGTCTAGGCCTCAAGTGAGACAAACATGGATTCTAGTAATAATTTTCATTC
66 TTTTGTAAAGTCTAAGTCTAGGCCTCAAGTGAGACAAACATGGATTCTAGTAATAATCTTCATTC
* *
2224293 ATTTTGTGATTCGGCACTAAAAACACATTCTCCTCATTAGGATAAATAATATTTATGGTTTTCTT
131 ATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATAAATAATATTGATGGTTTTCTT
* * * * * * * *
2224358 TTGTATGAAATTCCTTTCTTTGCCCTATTTCCCTTAAAATCAAAGTTTATGCCGTAAATACAGCA
196 TTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAAGCA
* *
2224423 AGCATTGATTCTTGTAACAGTCTCTACTT-TTTTCAAGATTGGGAACCAAAAACACTTTCCCTTT
261 AGCATTGATTCTTGTAACAGTCTCCA-TTCTTTTCAAGATTGGGAACCAAAAACACATT-CCTTT
* ** * * *
2224487 -ATTAGGATACATGACATTGACACTTTGGCATTGCAGGAAAAGGTTTCCTTCCTCCGTTTTTGAT
324 CATTAGGATACATGACATTGACGCTTTGGTGTCGCAAGAAAAGGTTTCTTTCCTCCGTTTTTGAT
* * **
2224551 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACCAGTCCCGGTTCTTTTCA
389 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACTAATCCCTATTCTTTTCA
* ** * *
2224616 GGATTTGGCACTATAAACATAGTCTTCTCATTAGGATGGGTGAAATTGTTG-ATTTGGTTTCGCA
454 GGATTTGGCACTATAAACATAGTCTTCTCATTAGGATAGACGAAATTGATGCTTTTGGTTT-GCA
* * * *
2224680 AGAAAGTCTTTCTTCCCACTAATTTTTCTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAACTTA
518 AGAAAGTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAACATG
2224745 GATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACT-AAAACACATTCTCCTCATTAGGA
583 GATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGA
* * * *
2224809 TAAAAGGTATTGTTGGTTTTATTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
648 TAAAAGATATTGATGGTTTTCTTTTGCATGAAATTCTTTTCTTTGCCCTATTTTCCTTAAAATCA
* * * * *
2224874 AAGCTCATCCCTTAAATAAGGCATGCTTTGATTCTTGTAACAGTCCCCATTCTTTTCAAGATTGG
713 AAGTTCATCCCTTAAAAAAGGCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGG
* * * * ** * ** *
2224939 GAACCAAAAACCCATACTTTTCTTTAGGATACCCGACATTAATGCTTTGGTGTC-AAAGGAAAAG
778 GAACCAAAAACACATTCCTTTCGTTAGGATACATGACATTGACACTTTGGTGTCGCAA-GAAAAG
* *
2225003 GTTTTCTTTCCTCTGTTTTTAATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGT
842 GTTTTCTTTCCTCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGT
* *
2225068 CTTACTAAT-CCTCATTCTTTTCTGGATTTGGCACTATAAATATAG
907 CTTACTAATCCCT-ATTCTTTTCAGGATTTGGCACTATAAACATAG
* * * * *
2225113 TCTTCTCATTAGCATGGGCGAAATTGATGCTTTGGTTTCGCAAGAAA-GTCTTTCTTCCCACTAA
1 TCTTCTCATTAGGATAGACGAAATTGATGCTTTGGTTTTGCAAGAAAGGT-TTTCTTCCCACCAA
* * * * * *
2225177 ATTTTCTAGAGTCTAAGTCTATGCCTCAAGTGAGAGAAACTTGGATTCTAGTAATAATCTTCATT
65 TTTTTGTAAAGTCTAAGTCTAGGCCTCAAGTGAGACAAACATGGATTCTAGTAATAATCTTCATT
* * *
2225242 CATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATAAA-AGGTATTTATGGTTTTA
130 CATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATAAATA-ATATTGATGGTTTTC
* * *
2225306 TTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCTCTTAAATAAGG
194 TTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAAG
* * * * * *
2225371 CATGCTTTGATTCTTGTAACAGTCCCCGTTCTTTTCAAGATTGGGAACCAAAAACCCATACCTTT
259 CAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTT
* ** * * * *
2225436 CGTTAGGATACCCGACATTAATGCTTTGGTGTC-AAAGGAAAAGGTTTTCTTTCCTCCATTTTTG
324 CATTAGGATACATGACATTGACGCTTTGGTGTCGCAA-GAAAAGG-TTTCTTTCCTCCGTTTTTG
* **
2225500 ATAGAATCAAAGTTTGTCTCTTAAATAAAACAAACATGATTAGTCTTACCGATCCCTATTCTTTT
387 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACTAATCCCTATTCTTTT
* * * *
2225565 CAGGATTTGGCTCTATAAACATAGTCTTCTCAATAGGATAGACGAAATTGATGCTTTCGTTTTGC
452 CAGGATTTGGCACTATAAACATAGTCTTCTCATTAGGATAGACGAAATTGATGCTTTTGGTTTGC
* *
2225630 AAGAAAGGT-TTTCTTCCCATCAATTTTTGTAAAGTCTAAGTCTAGGCCTCAAGTGAGACAAACA
517 AAGAAA-GTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAACA
* * *
2225694 TGGGTTCTAATAATAATCTTCATTCATTTTGTGATTCGGCACTAAAAACACATTCTCCTCATTAG
581 TGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAG
* * * *
2225759 GATAAATA-ATATTGATGGGTTTC-TTTGTATGAAAATCTTTTCTTTGCCCTATTTCCCTTAAAA
646 GATAAA-AGATATTGATGGTTTTCTTTTGCATGAAATTCTTTTCTTTGCCCTATTTTCCTTAAAA
* * * *
2225822 TCAAAGTTTAT-GCTGT-AAATAGAGCAAGCATTGATTCTTGTAACAGTCTCTACTT-TTTTCAA
710 TCAAAGTTCATCCCT-TAAAAAAG-GCAAGCATTGATTCTTGTAACAGTCTCCA-TTCTTTTCAA
* * * * *
2225884 GATTGGGAACCAAAAACACATTCCCTTCATTATGATACATGACATTGGCACTTTGGTGTGGCAAG
772 GATTGGGAACCAAAAACACATTCCTTTCGTTAGGATACATGACATTGACACTTTGGTGTCGCAAG
* *
2225949 AAAAGG-TTTCCTTCCTCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAATACAAACATGA
837 AAAAGGTTTTCTTTCCTCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGA
* *
2226013 TTAGTCTTACCAATCCCGATTCTTTTCAGGATTTGGCACTATAAACATAG
902 TTAGTCTTACTAATCCCTATTCTTTTCAGGATTTGGCACTATAAACATAG
* * * *
2226063 TCTTCTCATTAGGATGGGCGAAATTGATGCTTTGGTTTCGCAAGAAA-GTCTTTCTTCCCACTAA
1 TCTTCTCATTAGGATAGACGAAATTGATGCTTTGGTTTTGCAAGAAAGGT-TTTCTTCCCACCAA
* * *
2226127 TTTTTCTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAACTTGGATTCTAGTAATAATCTTCATT
65 TTTTTGTAAAGTCTAAGTCTAGGCCTCAAGTGAGACAAACATGGATTCTAGTAATAATCTTCATT
* * *
2226192 CATTTTGTGATTAGGCACTAAAAACACATTCACCTCATTAGGATAAA-AGGTATTGATGGTTTTA
130 CATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATAAATA-ATATTGATGGTTTTC
* *
2226256 TTTTGCATGAAAATCTTTTCTGTGCCCTATTTTCCTTAAAATCAAAGCTCATCCCTTAAATAATA
194 TTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAA-A
* * * * * *
2226321 -CAAGCTTTGATTCTTGCAACAGTCTCCATTCTTCTCAGGATTGGGAACTAAAAACACATTCCCT
258 GCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTT
* * ** * * * *
2226385 TCATTAGGGTACAAGACATTGGTGCTTTGGTGTAGTAAGAAAAGTTTTTCTTTCCACCGTTTTTG
323 TCATTAGGATACATGACATTGACGCTTTGGTGTCGCAAGAAAAG-GTTTCTTTCCTCCGTTTTTG
** * * * * * * * * *
2226450 ATAGAATCAAAGTACGCCTCCTACATAAGACAAATACGATAAGTTTTTCTAATCCCCATTCTTTT
387 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACTAATCCCTATTCTTTT
* * * *
2226515 CAGGATTTGGCACTATAAATATAGTCTTCTCATTAGGATTGACTAAATTGATGC-TTTGTTTTTG
452 CAGGATTTGGCACTATAAACATAGTCTTCTCATTAGGATAGACGAAATTGATGCTTTTG-GTTTG
* * * * * *
2226579 CAAGAAAGGCTTTCTTCCCACCAATCTTCGTAAAGTCTAAGCCCATGCCTCAGGTGAGACAAACA
516 CAAGAAAGTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAACA
* * * *
2226644 TGGGTTCTAGTAATAATTTTCATTCATTTTGTAATTTGGCACTAAAAACACATTCTCCTCATTAG
581 TGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAG
* *
2226709 GATAAAAGGTATTGATGGTTTTCTTTTGGATGAAATTCTTTTCTTTGCCCTATTTTCCTTAAAAT
646 GATAAAAGATATTGATGGTTTTCTTTTGCATGAAATTCTTTTCTTTGCCCTATTTTCCTTAAAAT
* * * * *
2226774 CAAAGCTCATCCCTTAAAAAAGGCAAGCTTTGATTCTTATAACAGTCCCCATTCTTTTCAAGACT
711 CAAAGTTCATCCCTTAAAAAAGGCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATT
* ** ** **
2226839 GGGAACCAAAAACATATTCCTTTCGTTAGGATACCCGACATTGACGTTTTGGTGTCAAAAGAAAA
776 GGGAACCAAAAACACATTCCTTTCGTTAGGATACATGACATTGACACTTTGGTGTCGCAAGAAAA
* * * *
2226904 GGTTTTCTTTCCTCCGTTTTTTATAAAATCAAAGTTT-TCT-TCTAAATAAGACAAACACGAATA
841 GGTTTTCTTTCCTCCGTTTTTGATAGAATCAAAGTTTGTCTCT-TAAATAAGACAAACATGATTA
* *
2226967 GTCTTGCTAATCCCTAATTCTTTTCAGGATTTGGCACTGTAAACATAG
905 GTCTTACTAATCCCT-ATTCTTTTCAGGATTTGGCACTATAAACATAG
* * * *
2227015 TCTTCTCATTAGGATAGGA-AAAATTGACGCTTTGGTTTCGCAAGAAA-GTCTTTCTTCCCACTA
1 TCTTCTCATTAGGATA-GACGAAATTGATGCTTTGGTTTTGCAAGAAAGGT-TTTCTTCCCACCA
* * *
2227078 ATTTTTCTAAAGTCTAAGTCTAGGCCTCAGGTGAGACAAACAT-GAGTTCTAGTAATAATTTTCA
64 ATTTTTGTAAAGTCTAAGTCTAGGCCTCAAGTGAGACAAACATGGA-TTCTAGTAATAATCTTCA
*
2227142 TTCATTTTGTGATTCGGCACTAAAAACACATTCTCCTCATTAGGATAAATAATATTGATGGTTTT
128 TTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATAAATAATATTGATGGTTTT
* * *
2227207 CTTTTGCATGAAATTCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCTCTTAAA-AAA
193 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAA
* * * * *
2227271 GGCAAGCTTTGATTCTTATAACAGTCCCCATTCTTTTCAAGACTGGGAACCAAAAACATATTCCT
258 -GCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCT
* ** ** **
2227336 TTCGTTAGGATACCCGACATTGACATTTTGGTGTCAAAAGAAAAGGTTTTCTTTCCTCCGTTTTT
322 TTCATTAGGATACATGACATTGACGCTTTGGTGTCGCAAGAAAAGG-TTTCTTTCCTCCGTTTTT
* * * *
2227401 TATAGAATCAAAGTTT-TCT-TCTAAATAAGACAAACACGAATAGTCTTGCTAATCCCTAATTCT
386 GATAGAATCAAAGTTTGTCTCT-TAAATAAGACAAACATGATTAGTCTTACTAATCCCT-ATTCT
* *
2227464 TTTCAGGATTTGGCACTATAAACATAGTCTTCTCATTAGGATAGGA-AAAATTGACGC-TTTGGT
449 TTTCAGGATTTGGCACTATAAACATAGTCTTCTCATTAGGATA-GACGAAATTGATGCTTTTGGT
* * *
2227527 TTCGCAAGAAAGTCTTTCTTCCCACTAATTTTTCTAAAGTCTAAGTCTAGGCCTCAAGTGAGACA
513 TT-GCAAGAAAGTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTGAGACA
* *
2227592 AACATGGATTCTAGTAATAATTTTCATTCATTTTGTGATTCGGCACTAAAAACACATTCTCCTCA
577 AACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCA
* * *
2227657 TTAGGATAAATA-ATATTGATGGTTTTCTTTTGTATAAAATTCTTTTCTTTGCCCTATTTCCCTT
642 TTAGGATAAA-AGATATTGATGGTTTTCTTTTGCATGAAATTCTTTTCTTTGCCCTATTTTCCTT
* * * * *
2227721 AAAATCAAAGTTTATGCCATAAATACA-GCAAGCATTGATTCTTGTAACAGTCTCTATAT-TTTT
706 AAAATCAAAGTTCATCCCTTAAA-AAAGGCAAGCATTGATTCTTGTAACAGTCTCCAT-TCTTTT
* * *
2227784 CAAGATTGGGAACCAAAAACCCATACCTTTCGTTAGGATAC----C--CGACA------T-T---
769 CAAGATTGGGAACCAAAAACACATTCCTTTCGTTAGGATACATGACATTGACACTTTGGTGTCGC
*
2227833 -----AA----TGC-TT--T--G-----GA-AGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
834 AAGAAAAGGTTTTCTTTCCTCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
2227878 TGATTAGTCTTACTAAT-CCTCATTCTTTTCTA-GATTTGGCACTATAAACATAG
899 TGATTAGTCTTACTAATCCCT-ATTCTTTTC-AGGATTTGGCACTATAAACATAG
* * * * *
2227931 TCTTCTCAATAGGACAGACGAAATTGATGCTTTTGCTTTGTAAGAAA-GTCTTTCTTCCCACCAA
1 TCTTCTCATTAGGATAGACGAAATTGATGCTTTGGTTTTGCAAGAAAGGT-TTTCTTCCCACCAA
* * *
2227995 TTTTTGGTAAAGTCTAAGTCTATGCCTCAAGAGAGACAAACAAGGATTCTAGTAATAATC-TCTA
65 TTTTT-GTAAAGTCTAAGTCTAGGCCTCAAGTGAGACAAACATGGATTCTAGTAATAATCTTC-A
* *
2228059 TTCATTTTGTGATTAAGCACTAAAAACACATTCTCCTCATTAGGATAAA-AGGTATTGATGGTTT
128 TTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATAAATA-ATATTGATGGTTT
* * *
2228123 TCTTTTGCATGAAATTCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCCCTTAAACAA
192 TCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAA
* * * * *
2228188 GGCAAGCTTTGATTCTTGTAACAGTCCCCATTCTTTTCAAGACTGGGAACCAAAAACATATTCCT
257 AGCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCT
* ** * **
2228253 TTCGTTAGGATACCCGACATTGACGTTTTGGTGTCAAAAGAAAAGGTTTTCTTTCCTCCGTTTTT
322 TTCATTAGGATACATGACATTGACGCTTTGGTGTCGCAAGAAAAGG-TTTCTTTCCTCCGTTTTT
* * **
2228318 TATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGATTAGTCTTACCGATCCCTATTCTTT
386 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACTAATCCCTATTCTTT
* * * *
2228383 TCCGGACTTGGCACTATAAACATAGTCTTCTCAATAGGATAGATGAAATTGATGC-TTTGGTTTT
451 TCAGGATTTGGCACTATAAACATAGTCTTCTCATTAGGATAGACGAAATTGATGCTTTTGG-TTT
* * *
2228447 GCAAGAAAGGT-TTTCTTCCCATCAATTTTTGTAAAGTCTAAGTCTAGGCCTCAGGTGAGACAAA
515 GCAAGAAA-GTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAA
* * *
2228511 CATGGGTTCTAGTAATAATTTTCATTCATTTTGTGATTTGGCACTAAAAACACATTCTCCTCATT
579 CATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATT
* *
2228576 AGGATAAATA-ATATTGATGGTTTTCTTTTGTATGAAATTCTTTTCTTTGCCCTATTTCCCTTAA
644 AGGATAAA-AGATATTGATGGTTTTCTTTTGCATGAAATTCTTTTCTTTGCCCTATTTTCCTTAA
* ** * * *
2228640 AATCAAAGTTTATGTCGTAAATAAA-GCAAGCATTGATTCTTGTAACGGTCTCTACTT-TTTTCA
708 AATCAAAGTTCATCCCTTAAA-AAAGGCAAGCATTGATTCTTGTAACAGTCTCCA-TTCTTTTCA
** **
2228703 AGATTGGGAACCAAAAACACATTCCTTTTATTAGGATACATGACATTGACACTTTGGCATCGCAA
771 AGATTGGGAACCAAAAACACATTCCTTTCGTTAGGATACATGACATTGACACTTTGGTGTCGCAA
* * *
2228768 GAAAAGG-TTTCCTTCCTCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAGCATG
836 GAAAAGGTTTTCTTTCCTCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG
*
2228832 ATTAGTCTTACCAATCCCTATTCTTTTCAGGATTTGGCACTATAAACATAG
901 ATTAGTCTTACTAATCCCTATTCTTTTCAGGATTTGGCACTATAAACATAG
*** *
2228883 TCTTCTCATTAGGATAGGTAAAATTGATGCTTTGGTTTTGCAAGAAA-GTCTTTCTTCCCACTAA
1 TCTTCTCATTAGGATAGACGAAATTGATGCTTTGGTTTTGCAAGAAAGGT-TTTCTTCCCACCAA
* * *
2228947 TTTTTCTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAACTTGGATTCTAGTAATAATCTTCATT
65 TTTTTGTAAAGTCTAAGTCTAGGCCTCAAGTGAGACAAACATGGATTCTAGTAATAATCTTCATT
* *
2229012 CATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATAAA-AGGTATTGATGGTTTTA
130 CATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATAAATA-ATATTGATGGTTTTC
* *
2229076 TTTTGCATGAAAATCTTTTCTTTGCCCTA-TTTCCTTAAAATCAAAGCTCATCCCTTAAATAATG
194 TTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAAG
* * * * * *
2229140 CATGCTTTGATTCTTATAACAGTCTCCGTTCATTTCAAGATTGGGAACCATAAACACATTCCTTT
259 CAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTT
* ** * * * *
2229205 TATTAGGATACCCGACATTAATGCTTTGGTGTC-AAAGGAAAAGGTTTTCTTTCCTCTGTTTTTG
324 CATTAGGATACATGACATTGACGCTTTGGTGTCGCAA-GAAAAGG-TTTCTTTCCTCCGTTTTTG
2229269 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC-TGATTAGTCTTACTAAT-CCTCATTCTTT
387 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACTAATCCCT-ATTCTTT
* * * * *
2229332 TCTGGATTTGGCACTATGAACATAGTCTTCTCAATAGGATAGACGAAATTGATGCTTTTGCTTTA
451 TCAGGATTTGGCACTATAAACATAGTCTTCTCATTAGGATAGACGAAATTGATGCTTTTGGTTTG
*
2229397 TAAGAAAGTCTTTCTTCCCACCAATTTTTGGTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAAC
516 CAAGAAAGTCTTTCTTCCCACCAATTTTT-GTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAAC
* *
2229462 ATGGATTCTAGTAATAATCTTCATTCATTTTGAGATTAAGCACTAAAAACACATTCTCCTCATTA
580 ATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTA
* *
2229527 GGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAA
645 GGATAAAAGATATTGATGGTTTTCTTTTGCATGAAATTCTTTTCTTTGCCCTATTTTCCTTAAAA
* * * * *
2229592 TCAAAGCTCATCTCTTAAATAAGGCAAGCTTTGATTCTTGTAACAGTC-CCTATTCTTTTCAAAA
710 TCAAAGTTCATCCCTTAAAAAAGGCAAGCATTGATTCTTGTAACAGTCTCC-ATTCTTTTCAAGA
* * * ** ** **
2229656 TTAGGAACCAAAAACACATTCCTTTCGATAGGACACCCGACATTGATGCTTTGGTGTCAAAAGAA
774 TTGGGAACCAAAAACACATTCCTTTCGTTAGGATACATGACATTGACACTTTGGTGTCGCAAGAA
* * * *
2229721 AAGGTTTTCTTTCCTCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAAT-AGACAAATACGATA
839 AAGGTTTTCTTTCCTCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATT
* * *
2229785 AGTCTTACTAATCCCCATTCTTTTCAGGATTTGGCACTAAAAACATTG
904 AGTCTTACTAATCCCTATTCTTTTCAGGATTTGGCACTATAAACATAG
* * ** * *
2229833 TCTTCTCAGTAGGATTGATTAAATTGATGCTTTGTTTTTGCAAGAAAGGCTTTCTTCCCACCAAT
1 TCTTCTCATTAGGATAGACGAAATTGATGCTTTGGTTTTGCAAGAAAGGTTTTCTTCCCACCAAT
* ** * * * * *
2229898 CTACGTAAAGTCTAAGCCCATGCCTCAAGTGAGACAAACATGGATTCTAGTAATTATCTTCACTC
66 TTTTGTAAAGTCTAAGTCTAGGCCTCAAGTGAGACAAACATGGATTCTAGTAATAATCTTCATTC
* *
2229963 ATTTTGTGATTAGGCA-TATAAAACACATTCTCCTCATTAGGATAAATATTGTTGATGGTTTT-T
131 ATTTTGTGATTAGGCACTA-AAAACACATTCTCCTCATTAGGATAAATAATATTGATGGTTTTCT
* * **
2230026 TTTGCATGAAAATCTTGTGTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCAGTAAATAAAGC
195 TTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAAGC
* *
2230091 AAGCATTGATTCTTGTAATAGTCTCCA-T-TTTTCAAGATTTGGAACCAAAAACACATTCCTTTC
260 AAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTC
* * * ** * *
2230154 ATTTGGATACCTGACTTTGACGCTTTGGTGTCATAGGAAAAGGTTTTCTTTCCTCCGTTTTTTAT
325 ATTAGGATACATGACATTGACGCTTTGGTGTCGCAAGAAAAGG-TTTCTTTCCTCCGTTTTTGAT
* * * *
2230219 AGAATCAAAGTTTATCTCTTAAATAAGACAAATATGATTAGTCTTACTAATACCTAGTCTTTTCA
389 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACTAATCCCTATTCTTTTCA
*
2230284 GGATTTGGCACTATAAACATAGTCTTCTCAATAGGATAGACGAAATTGATGC-TTTGGCTTTGCA
454 GGATTTGGCACTATAAACATAGTCTTCTCATTAGGATAGACGAAATTGATGCTTTTGG-TTTGCA
2230348 AGAAAGGT-TTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAACAT
518 AGAAA-GTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAACAT
* *
2230412 GGATTCTAGTAATAATCTTCATTCATTTTGTGATTTGGCACTTAAAACACATTCTCCTCATTAGG
582 GGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGG
* * * *
2230477 ATAAATA-TTATTGATGGTTTTCTTTTGCATGAAAATCTTTTTTTTGCCTTATTTTCCTTAAAAT
647 ATAAA-AGATATTGATGGTTTTCTTTTGCATGAAATTCTTTTCTTTGCCCTATTTTCCTTAAAAT
* * ** * * *
2230541 CAAAGTTCATCTCGTAAATAAA-GCAAGCATTGATTCTTGTAGTAGTCTGCATTTTTTTTAAGAT
711 CAAAGTTCATCCCTTAAA-AAAGGCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGAT
* * *
2230605 TGGGAACCAAAAACACATTCCCTTCTTTAGGATACATGACATTGACACTTTGGTGTCGGAAGAAA
775 TGGGAACCAAAAACACATTCCTTTCGTTAGGATACATGACATTGACACTTTGGTGTCGCAAGAAA
* * * * * *
2230670 AGGTTTCCTTCCCACCGTTTTTGATAGAATCGAAGTTT-TCGT-TTAAATAAGACAAATATGAAT
840 AGGTTTTCTTTCCTCCGTTTTTGATAGAATCAAAGTTTGTC-TCTTAAATAAGACAAACATGATT
* * *
2230733 AGTCTTGCTAATCCCTAATTCTTTTCAAGATTTGGCACTATAGACATAG
904 AGTCTTACTAATCCCT-ATTCTTTTCAGGATTTGGCACTATAAACATAG
* * *
2230782 TCTTCTCAATAGGATAAACGAAATTGATGCTTTGGTTTTGCAAGAAAGGTTTTCTTCCCATCAAT
1 TCTTCTCATTAGGATAGACGAAATTGATGCTTTGGTTTTGCAAGAAAGGTTTTCTTCCCACCAAT
2230847 TTTTGTAAAGTCTAAGTCTAGGCCTCAAGTGAGACAAACATGGATTCTAGTAATAATCTTCATTC
66 TTTTGTAAAGTCTAAGTCTAGGCCTCAAGTGAGACAAACATGGATTCTAGTAATAATCTTCATTC
* * **
2230912 ATTTTGTGATTCGGCTCTAAAAACACATTCTCCTTTTTAGGATAAATAATATTGATGGTTTTCTT
131 ATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATAAATAATATTGATGGTTTTCTT
* * *
2230977 TTGTATGAAAATCTTTTCCTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCGTAAATAAAGCA
196 TTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAAGCA
* *
2231042 AGCATTGATTCTTGAAACAGTCTCCATTTTTTTCAAGATTGGGAACCAAAAACACATTCCCTTT-
261 AGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATT-CCTTTC
* * * * *
2231106 AGTAGGATACATGAGATTGACACTTTGGTGTCGCAAGAAAAGGATTCCTTCC-CACTGTTTTTGA
325 ATTAGGATACATGACATTGACGCTTTGGTGTCGCAAGAAAAGGTTTCTTTCCTC-C-GTTTTTGA
* * * * *
2231170 TAGTATCAAAGTTT-TCTTTTAAATAAGACAAACTTGAATAGTCTTGCTAATCCCTAATTCTTTT
388 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACTAATCCCT-ATTCTTTT
* *
2231234 CAGGATTTGGCACTATAAACATAGTCTTCTCTTTAGGATAGACGAAATTAATGC-TTTGGTTTCG
452 CAGGATTTGGCACTATAAACATAGTCTTCTCATTAGGATAGACGAAATTGATGCTTTTGGTTT-G
* * * *
2231298 CAAGAAAGTCTTACTTCCCGCCAATTTTTCTAAAGTCTAAGTCTACGCCTCAAGTGAGACAAACA
516 CAAGAAAGTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAACA
2231363 TGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAG
581 TGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAG
* * * *
2231428 GATAAATGATATTGGTGGTTTTCTTTTGCATGAAATT-TTTTCCGTTGTCCTATTTTCCTTAAAA
646 GATAAAAGATATTGATGGTTTTCTTTTGCATGAAATTCTTTT-CTTTGCCCTATTTTCCTTAAAA
* *
2231492 TCAAAGTTCATCCCTGAAAAAAGGCAAGCATTGATTCTTGCAACAGTCTCCATTCTTTTCAAGAT
710 TCAAAGTTCATCCCTTAAAAAAGGCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGAT
* * * ** **
2231557 TAGGAACTAAAAACACATTCCCTTCGTTAGGATACCCGACATTGACACTTTGGTGTCAAAAGAAA
775 TGGGAACCAAAAACACATTCCTTTCGTTAGGATACATGACATTGACACTTTGGTGTCGCAAGAAA
2231622 AGGTTTTCTTTCCTCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTA
840 AGGTTTTCTTTCCTCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTA
**
2231687 GTCTTACCGATCCCTATTCTTTTCAGGATTTGGCACTATAAACATAG
905 GTCTTACTAATCCCTATTCTTTTCAGGATTTGGCACTATAAACATAG
* * *
2231734 TCTTCTCAATAGGATAGATGAAATTGATGCTTTGGTTTTGCAAGAAAGGTTTTCTTCCCATCAAT
1 TCTTCTCATTAGGATAGACGAAATTGATGCTTTGGTTTTGCAAGAAAGGTTTTCTTCCCACCAAT
* * *
2231799 TTTTGTAAAGTCTAAGTCTAGGCCTCAGGTGAGACAAACATGGATTCTAGTAACAATCTTCACTC
66 TTTTGTAAAGTCTAAGTCTAGGCCTCAAGTGAGACAAACATGGATTCTAGTAATAATCTTCATTC
* * *
2231864 ATTTTGTGATTAGGCACAAAAAACACATTCTTCTCATTAGGATAAA-AGGTATTGATGGTTTTCT
131 ATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATAAATA-ATATTGATGGTTTTCT
* * * * *
2231928 TTCGCATGAAATTCTTTTCTTTG-CCTATTTTCCTTAAAATGAAAGCTCATCCCTTAAATAAGGC
195 TTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAAGC
* * *
2231992 AAGCTTTGATTCTTGTAACTGTC-CCTGTTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTT
260 AAGCATTGATTCTTGTAACAGTCTCC-ATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTT
* * * * *
2232056 TATTAGGATACATGACATTGACACTTTGGTGTCGCAAGGAAAGGTTTCATTCCCACCGTTTTTGA
324 CATTAGGATACATGACATTGACGCTTTGGTGTCGCAAGAAAAGGTTTC-TTTCCTCCGTTTTTGA
* *
2232121 TAGAATCAAAGTTT-TCTTTTAAATAAGACAAACATGAATAGTCTTACTAATCCCTAATTCTTTT
388 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACTAATCCCT-ATTCTTTT
* *
2232185 TAGGATTTGGCACTATAAACATAGTCCTCTCATTAGGATAGACGAAATTGATGC-TTTGGTTTCG
452 CAGGATTTGGCACTATAAACATAGTCTTCTCATTAGGATAGACGAAATTGATGCTTTTGGTTT-G
* * * * *
2232249 CAAGAAAGTCTTTCTTCCCACCAACTTTTCTAAAGTCTAAATCTATGCCTCAAGTAAGATAAACA
516 CAAGAAAGTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAACA
* * * *
2232314 TGGATTCTAGTATTAATATTCATTTATTTTGTGATTAGGCACTAAAAACACGTTCTCCTCATTAG
581 TGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAG
* *
2232379 GATAAATGATATTTATGGTTTTCTTTTGCATGAAAATT-TTTTCTTTGCCCTATTTTCCTTAAAA
646 GATAAAAGATATTGATGGTTTTCTTTTGCATG-AAATTCTTTTCTTTGCCCTATTTTCCTTAAAA
* * *
2232443 TCAAAGTTCATCCCTTAAAAAAGGCAAGCATTGATTCTTGCAACTGTCTCCATTCTTTTCAGGAT
710 TCAAAGTTCATCCCTTAAAAAAGGCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGAT
* * *** * * *
2232508 TGGGAACTAAAAACACATTCCTTTCGTTAGGATACAAGACATTGATGGTTTGATGTAGCTA-AAA
775 TGGGAACCAAAAACACATTCCTTTCGTTAGGATACATGACATTGACACTTTGGTGTCGCAAGAAA
* * * * * * * *
2232572 AGTTTTTCTTTCCACCGTTTTTGATAGAAACAAAGTATGTATCTTAAGTAAGACAAATATGATAA
840 AGGTTTTCTTTCCTCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTA
* * * *
2232637 GTCTAACTAGTCCCCATTCTTTTCAGGATTCGGCACTATAAACATAG
905 GTCTTACTAATCCCTATTCTTTTCAGGATTTGGCACTATAAACATAG
* * * *
2232684 TCTTCTCATTAGGATTGACTAAATTGATGCTTTGTTTTTGCAAGAAAGGCTTTCTTCCCACCAAT
1 TCTTCTCATTAGGATAGACGAAATTGATGCTTTGGTTTTGCAAGAAAGGTTTTCTTCCCACCAAT
* * * * * *
2232749 CTTTGTAAAGTCTAAGCCCATGCCTTAAGTGAGACAAACATGGATTCTAGTAATAATCTTCACTC
66 TTTTGTAAAGTCTAAGTCTAGGCCTCAAGTGAGACAAACATGGATTCTAGTAATAATCTTCATTC
* * *
2232814 ATTTTGTGATTAGGCACTAAAAA-GCTTTCTCCTCATTAGGATAAA-AGGTATTGATGGTTTTCT
131 ATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATAAATA-ATATTGATGGTTTTCT
* *
2232877 TTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTT-ATCTCTTAAATAAGG
195 TTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAG-TTCATCCCTTAAATAAAG
* * *
2232941 CAAGCTTTGATTCTTGTAACAGTC-CTCGTTCGTTTCAAGATTGGGAACCAAAAACACATTCCTT
259 CAAGCATTGATTCTTGTAACAGTCTC-CATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTT
** **
2233005 TCATTAGGATACCCGACATTGACGCTTTGGTGTCAAAAGAAAAGGTTTTCTTTCCTCCGTTTTTG
323 TCATTAGGATACATGACATTGACGCTTTGGTGTCGCAAGAAAAGG-TTTCTTTCCTCCGTTTTTG
* * * * *
2233070 ATAGAATCAAAGTCTGTCTCTTAAATAAGACACACATGATTAGTCTTACCAATCCCCACTCTTTT
387 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACTAATCCCTATTCTTTT
* * * * *
2233135 CAAGATTTGGCACTATAGACATAGTCTTCTAAATAGGAT-GACGAAATTAATGC-TTTGGTTTTG
452 CAGGATTTGGCACTATAAACATAGTCTTCTCATTAGGATAGACGAAATTGATGCTTTTGG-TTTG
* * * * *
2233198 CAAGAAAGTTTTTCTTCCCATCAATTTTTGTAAAGTCTAAGTCTAGGACTCAAGTAAGACAAACA
516 CAAGAAAGTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAACA
* * * * **
2233263 TGGATTCTAGTAATAATCTTTATTCATTTTGTGATTCGGCTCTAAAAACACATTCTCTTTTTTAG
581 TGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAG
* *
2233328 GATAAATA-ATATTGATGGTTTTCTTTTGTATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAA
646 GATAAA-AGATATTGATGGTTTTCTTTTGCATGAAATTCTTTTCTTTGCCCTATTTTCCTTAAAA
* *
2233392 TCAAAGTTCAT-CCTGTAAATAAA-GCAAGCATTGATTCTTGAAACAGTCTCCATTTTTTTCAAG
710 TCAAAGTTCATCCCT-TAAA-AAAGGCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAG
* *
2233455 ATTGGGAACCAAAAACACATTCCCTTT-ATTAGGATACATGAGATTGACACTTTGGTGTCGCAAG
773 ATTGGGAACCAAAAACACATT-CCTTTCGTTAGGATACATGACATTGACACTTTGGTGTCGCAAG
* * * * * * *
2233519 AAAAGGATTCCTTCCCACTGTTTTTGATAGAATCAAAGTTT-TCTTTTAAATAAGACAAACATTA
837 AAAAGGTTTTCTTTCCTCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGA
* *
2233583 ATAGTCTTGCTAATCCCTAATTCTTTTCAGGATTTGGCACTATAAACATAG
902 TTAGTCTTACTAATCCCT-ATTCTTTTCAGGATTTGGCACTATAAACATAG
* * * * *
2233634 TCTTCTCTTTAGGATAGACGAAATTAATGCTTTGGTTTCGCAAGAAA-GTCTTACTTCCCGCCAA
1 TCTTCTCATTAGGATAGACGAAATTGATGCTTTGGTTTTGCAAGAAAGGT-TTTCTTCCCACCAA
* *
2233698 TTTTTCTAAAGTCTAAGTCTACGCCTCAAGTGAGACAAACATGGATTCTAGTAATAATCTTCATT
65 TTTTTGTAAAGTCTAAGTCTAGGCCTCAAGTGAGACAAACATGGATTCTAGTAATAATCTTCATT
* *
2233763 CATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATAAATGATATTGGTGGTTTTCT
130 CATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATAAATAATATTGATGGTTTTCT
* * * *
2233828 TTTGCATG-AAATTTTTTCCGTTGTCCTATTTTCCTTAAAATCAAAGTTCATCCCTGAAA-AAAG
195 TTTGCATGAAAATCTTTT-CTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAA-
* * * *
2233891 GCAAGCATTGATTCTTGCAACAGTCTCCATTCTTTTCAAGATTAGGAACTAAAAACACATTCCCT
258 GCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTT
** * **
2233956 TCATTAGGATACCCGACATTGACACTTTGGTGTCAAAAGAAAAGGTTTTCTTTCCTCCGTTTTTG
323 TCATTAGGATACATGACATTGACGCTTTGGTGTCGCAAGAAAAGG-TTTCTTTCCTCCGTTTTTG
* **
2234021 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTATTCTTACCGATCCCTATTCTTTT
387 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACTAATCCCTATTCTTTT
* *
2234086 CAGGATTTGTCACTATAAACATAGTCTTCTCAATAGGATAGACGAAATTGATG-TTTTGGTTTTG
452 CAGGATTTGGCACTATAAACATAGTCTTCTCATTAGGATAGACGAAATTGATGCTTTTGG-TTTG
* * *
2234150 CAAGAAAGGT-TTTCTTCCCATCAATTTTTGTAATGTCTAAGTCTA-GACCTC-AGGGAGACAAA
516 CAAGAAA-GTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATG-CCTCAAGTGAGACAAA
* * * *
2234212 CATGGATTCTAGTAACAATCTTCACTCATTTTGTGATTAGGCACAAAAAACACATTCTTCTCATT
579 CATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATT
* *
2234277 AGGATAAAAGGTATTTATGGTTTTCTTTTGCATGAAATTCTTTTCTTTGCCCTATTTTCCTTAAA
644 AGGATAAAAGATATTGATGGTTTTCTTTTGCATGAAATTCTTTTCTTTGCCCTATTTTCCTTAAA
* * * * * *
2234342 ATGAAAGCTCATCCCTTAAATAAGGCAAGCTTTGATTCTTCTAACAGTCCCCATTCTTTTCAAGA
709 ATCAAAGTTCATCCCTTAAAAAAGGCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGA
* * * * *
2234407 TTGGGAACCAAAAACACATTCCTTT-GATTTGGATACCTGACATTGACGCTTTGGTGTCGTAGGA
774 TTGGGAACCAAAAACACATTCCTTTCG-TTAGGATACATGACATTGACACTTTGGTGTCGCAAGA
* * * *
2234471 AAAGGTTTTCTTTCTTCCGTTTTTTATAAAATCAAAGTTTATCTCTTAAATAAGACAAACATGAT
838 AAAGGTTTTCTTTCCTCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAT
* *
2234536 TAGTCTTACTAATCCCCAATCTTTTCAGGATTTGGCACTATAAACATAG
903 TAGTCTTACTAATCCCTATTCTTTTCAGGATTTGGCACTATAAACATAG
* *
2234585 TCTTCTCAATAGGATAGACGAAATTGATGCTTTGGTTTTGCAGGAAAGGTTTTCTTCCCACCAAT
1 TCTTCTCATTAGGATAGACGAAATTGATGCTTTGGTTTTGCAAGAAAGGTTTTCTTCCCACCAAT
* * *
2234650 TTTTGTAAAGTCTAAGTCTATGCCTCAAGAGAGACAAACATGGGTTCTAGTAATAATCTTCATTC
66 TTTTGTAAAGTCTAAGTCTAGGCCTCAAGTGAGACAAACATGGATTCTAGTAATAATCTTCATTC
* * *
2234715 ATTTTGTGATTCGGCACTAAAAGCACATTCTCCTCATTAGGATAAATATTATTGATGGTTTTCTT
131 ATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATAAATAATATTGATGGTTTTCTT
* * *
2234780 TTGCATGAAAATCTTTCCTTTGCCCTATTTT-CTATAAAATCAAAGTTCATCCCATAGATAAAGC
196 TTGCATGAAAATCTTTTCTTTGCCCTATTTTCCT-TAAAATCAAAGTTCATCCCTTAAATAAAGC
** * *
2234844 AAGCATTGATTCTTGTAATTGTCTCCATTTTTTTCAAGATTGGGAACCAAAAACACATTCCCTTC
260 AAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTC
** * * *
2234909 ATTAGGATACATGACATTGACATTTTGGTGTTGCAAGAAAAGGTTTCCTTCCCACCGTTTTTGAT
325 ATTAGGATACATGACATTGACGCTTTGGTGTCGCAAGAAAAGGTTT-CTTTCCTCCGTTTTTGAT
* * * * *
2234974 AAAATCAAAGTTT-TCTTTTAAATAAGACAAACATGAATAGTCTTGCTAATCCTTAATT-TTTTC
389 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACTAATCCCT-ATTCTTTTC
* * * *
2235037 TGGATTTGGCACTATAAACATGGTCTTCTCATTAGGATAGACAAAATTGATGC-TTTGGTTTCAC
453 AGGATTTGGCACTATAAACATAGTCTTCTCATTAGGATAGACGAAATTGATGCTTTTGGTTT-GC
** * *
2235101 AAGAAAGTCTTTCTTCCCACCAACGTTTCTAAAGTCTAAGTCTATGCCTCAAGTGAGATAAACAT
517 AAGAAAGTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAACAT
*
2235166 GGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACGTTCTCCTCATTAGG
582 GGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGG
* * * *
2235231 ATAAATGATATTTATGGTTTTCTTTTGCATGAAATTTTTTTCTTTACCCTATTTTCCTTAAAATC
647 ATAAAAGATATTGATGGTTTTCTTTTGCATGAAATTCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * * *
2235296 AAAGTTCATCCCTTAAAAAAGGCAAGCATTGATTCTTGCAACAGTCTCTATTCTTTTCAGGATTA
712 AAAGTTCATCCCTTAAAAAAGGCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTG
* * * *** *
2235361 GGAACTAAAAACACATTCCTTTCATTAGGATACAAGACATTGATGGTTTGGTGTAGCAA-AAAAG
777 GGAACCAAAAACACATTCCTTTCGTTAGGATACATGACATTGACACTTTGGTGTCGCAAGAAAAG
* * * * * *
2235425 TTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTATGTCTCTTAAGTAAGACAAATATGATAAGT
842 GTTTTCTTTCCTCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGT
* * *
2235490 CTCACTAATCGCC-ATTCTTTTCAAGATTCGGCACTATAAACATAG
907 CTTACTAATC-CCTATTCTTTTCAGGATTTGGCACTATAAACATAG
* * * *
2235535 TCTTCTCATTAGGATTGACTAAATTGATGCTTTGTTTTTGCAAGAAAGGCTTTCTTCCCACCAAT
1 TCTTCTCATTAGGATAGACGAAATTGATGCTTTGGTTTTGCAAGAAAGGTTTTCTTCCCACCAAT
* * * * * *
2235600 CTTTGTAAAGTCTAAGCCCATGCCTTAAGTGAGACAAACATGGATTCTAGTAATAATCTTCACTC
66 TTTTGTAAAGTCTAAGTCTAGGCCTCAAGTGAGACAAACATGGATTCTAGTAATAATCTTCATTC
* * *
2235665 ATTTTGTGATTAGGCACTAAAAA-GCTTTCTCCTCATTAGGATAAA-AGGTATTGATGGTTTTCT
131 ATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATAAATA-ATATTGATGGTTTTCT
* * * *
2235728 TTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCTCTCAAATAAGGC
195 TTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAAGC
** * * * ** ** *
2235793 AAGC-TT-ATCTCTTCCCACCA-ACT--TTTCTAAAGTCTAAG-TCTATG-CCTCAAGTGAGATA
260 AAGCATTGAT-TCTT-GTAACAGTCTCCATTCT--TTTC-AAGAT-TGGGAAC-CAA---A-A-A
* *** * ** * * * ** **
2235851 AACA-TGGATTC--TAGTAATA-ATCTTCATT--C-ATTTTGTGATTAGGCACTTAAAA---CAC
313 CACATTCCTTTCATTAG-GATACAT-GACATTGACGCTTTGGTG--T-CGCA-AGAAAAGGTTTC
* * * * * * * *** *
2235906 GTT-CTCC-TTATTAGGATA-AATGATATTTATGGTTTTCTT---T-TG-CATGGA--ATT--TT
372 TTTCCTCCGTT-TT-TGATAGAATCAAAGTT-T-G-TCTCTTAAATAAGACAAACATGATTAGTC
* * * * * ** * * * *
2235959 TTTCT-TTGCCCTATTTCCCTTAAAATCA-AAGTTATCCCTTAAAAAAAGCA-AG-CAT-TGATT
432 TTACTAAT-CCCTA-TT--CTT---TTCAGGATTTGGCAC-T--ATAAA-CATAGTCTTCTCATT
*** * * * * * * * * ** **
2236019 CTCATA-AC--AGTCTCCATTCTTTTCAAGATTGGGAACTATAA-ACATATTCTTTTCATTAGGA
486 AGGATAGACGAAAT-T-GATGCTTTT---GGTTTGCAA-GA-AAGTC-T-TTCTTCCCACCA--A
*** * * * * * * * * * * *
2236080 TACATG-ACA-T-TGATGCTTTGGTGTCGCAA--GA-A-AAGC-T--TTTCTTGCAACT-ATTTT
540 TTTTTGTAAAGTCT-AAG-TCT-ATGCCTCAAGTGAGACAAACATGGATTCTAGTAA-TAATCTT
* * * * * * * * * * *
2236134 AATAGAATCAAAGTTTGTCTCCTAACTAAGAAAAACATTAATACTCATACTAATCCCCACTATTT
601 CAT----TC--A--TT-T-T-GTGA-TTAG----GCACTAA-A--AACAC-ATTCTCCTC-A---
** ** *** *
2236199 TTAGGATTTGGCACCATAAACATAGTCTTCTCATTAAGATTG-ATGAAATTGATGCTTTGGT-TT
642 TTAGGA--T-AAAAGATATTGATGGT-TT-TC-TT----TTGCATGAAA-T--T-CTTT--TCTT
* * * * * * * * * *
2236262 TGCAAGAAAGGCT-TTCTTCC-GACCAATTTTTGTAAAGTCTAAGT-TCGTACCTCAAGTGAGAC
691 TGC-------CCTATT-TTCCTTA--AA---AT-CAAAGT-TCA-TCCCTTA---AAAA--AGGC
* * * * * * *** * * * *
2236324 AAACATGGATTCTGGTAATAATCTTCATT-TATTTTGTGATTAGGCACTAAAAACGCATT-CTTC
735 AAGCATTGATTCTTGTAACAGTCTCCATTCT-TTTCAAGATTGGGAACCAAAAACACATTCCTT-
* * ** *** * * * * ** * ** *
2236387 TCATTAGGATAAATGATGTTGATGGTTT-TTTTTGCATGAAAATCTTTCCTTTGCCT-TATTTTC
798 TCGTTAGGATACATGACATTGACACTTTGGTGTCGCAAGAAAAGGTTTTCTTT-CCTCCGTTTTT
** * * ** * * * * * * *
2236450 CTTAAAATAAAAGTTCATCCCCTAAATATGGCAAGA-AT--TGACTCTTA-TAACAGTCTCTATT
862 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAA-ACATGATTAGTCTTACT-A-A-TCCCTATT
* *
2236511 C-TTTCAGGA-TTGGCACCACAAACATAG
923 CTTTTCAGGATTTGGCACTATAAACATAG
* ** * *
2236538 TCTTCTCATTAGGATAGATC-AAAATGATGCTTTGGTTTTATAAGAAAGGCTTTCTTCCGACCAA
1 TCTTCTCATTAGGATAGA-CGAAATTGATGCTTTGGTTTTGCAAGAAAGGTTTTCTTCCCACCAA
*
2236602 TTTTTGTAAAGTCTAAGT-TCGTGCCTCAAGTGAGACAAACATGGATTCTAGTAATAATCTTCAT
65 TTTTTGTAAAGTCTAAGTCTAG-GCCTCAAGTGAGACAAACATGGATTCTAGTAATAATCTTCAT
* * *
2236666 TCATTTTGTAATTAGGCACTAAAAACACATTCTCCTCACTAGTG-TAAATGATATTGAT-GTATT
129 TCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAG-GATAAATAATATTGATGGT-TT
* *
2236729 TCTTTTGCATGAAAATCTTTGCTTTGCCCTATTTTCCTTAAAATCGAAGTT-ATCCCTTAAATAA
192 TCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAA
** * ** *
2236793 AGCAAGCATTGATTCTCATAACTA-TCTCCATTCTTTTCAACATTGGGAACCATGAACACATTCA
257 AGCAAGCATTGATTCTTGTAAC-AGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCC
* * * * *
2236857 TTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTGCAC-CTGATT
321 TTTCATTAGGATACATGACATTGACGCTTTGGTGTCGCAAGAAAAG-GTTTCTTTC-CTCCGTTT
* * * * * *
2236921 TTAATAGAATCAAAGTTTATCTCTTAACTAAGACAAACATGAATACTCATACTAATCGCC-ATTC
384 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACTAATC-CCTATTC
* * ** *
2236985 TTTTTAGGATTTGACACCGTAAACATAGTCTTCTCATTAGGATAGATGAAATTGATGC-TTTGGT
448 TTTTCAGGATTTGGCACTATAAACATAGTCTTCTCATTAGGATAGACGAAATTGATGCTTTTGGT
* * * ** *
2237049 TTCGCAAGAAAG-CCTTCTTTCCCACCAATTTTGGAAAAGTCTAAGT-TCGGGCCTTAA-TAGAG
513 TT-GCAAGAAAGTCTTTC-TTCCCACCAATTTTTGTAAAGTCTAAGTCT-ATGCCTCAAGT-GAG
* * * * * * *
2237111 ATAAACACGGATTCTAGTAATAATCTTCGTTTATTTTCTGATTAGGCACTATAAACACATTCTAC
574 ACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCC
* * * *
2237176 TCATTAGGATAAATGATATTGATAGTTTTCTTTTGTATG-AATATCTTTTCTTCGCCCTATTTTC
639 TCATTAGGATAAAAGATATTGATGGTTTTCTTTTGCATGAAAT-TCTTTTCTTTGCCCTATTTTC
* * * *
2237240 CTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGAATATCGTAACAGTCTCCATTCTTT
703 CTTAAAATCAAAGTTCATCCCTTAAAAAAGGCAAGCATTGATTCTTGTAACAGTCTCCATTCTTT
** * * * ** * *
2237305 TCAAGATTGGGAATTAATAACACATTCCCTTCGTTAGGATATATGACATTGATGCTTTGGGGCCG
768 TCAAGATTGGGAACCAAAAACACATTCCTTTCGTTAGGATACATGACATTGACACTTTGGTGTCG
* * * * ** * * * *
2237370 TAAGAAATGCTTTTCTTGCAGCCGTTTTTGATAGGAT-TAAGTTTGCCTCTTAACTAAGACAAAC
833 CAAGAAAAGGTTTTCTTTCCTCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
* * * * * ** * *
2237434 ATAAATACTCATACTAAT-CCTCATTCTTTTAAGGATTACGCACCAAAAACATAG
898 ATGATTAGTCTTACTAATCCCT-ATTCTTTTCAGGATTTGGCACTATAAACATAG
*
2237488 TCTTCTTATTAGGATAGACGAAATTGATGCTTTGGTTTTGCAAGAAA-GTCTTTCTTCCCACCAA
1 TCTTCTCATTAGGATAGACGAAATTGATGCTTTGGTTTTGCAAGAAAGGT-TTTCTTCCCACCAA
* * * * *
2237552 TTTTGGCAAAGTTTAAGT-TCGTGCCTCAACTGAGACAAACATGGATTCTAGTAATAATCTTCAT
65 TTTTTGTAAAGTCTAAGTCTAG-GCCTCAAGTGAGACAAACATGGATTCTAGTAATAATCTTCAT
* ** ** * * * *
2237616 TCATTTTGTGATTATGTGCTGTAAACACATTTTTCTCAATAGGATAAATGATATTGATGGTTTTC
129 TCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATAAATAATATTGATGGTTTTC
* * * *
2237681 TTTTGCTTGAAAATCTTTTGTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAATAATG
194 TTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAAG
** * *
2237746 CAAGCATTGATTCTCATAACAGTCTCCATTCTTTTTAAGATTGGGAACCAAAAACACATTCCTCT
259 CAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTT
* * * * * * ** *
2237811 CATTTGGATATATGACATTGATGCTTTGGTGTCACAAGAAAAGTTTTTCTTGCAACAGTTTTT-A
324 CATTAGGATACATGACATTGACGCTTTGGTGTCGCAAGAAAAG-GTTTCTTTCCTCCGTTTTTGA
* * * * * *
2237875 TAGAATCAGAGTTTTTCTCTTAAATAAGATAAACACGAAT-GCTCATACTAATCCCTATTCTTTT
388 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAG-TCTTACTAATCCCTATTCTTTT
** * * *
2237939 ACA-GATTACGCACCATAAACATAGTCTTCTCATAAGGATAGATGAAATTGATGC-TTTGGTTTC
452 -CAGGATTTGGCACTATAAACATAGTCTTCTCATTAGGATAGACGAAATTGATGCTTTTGGTTT-
* * * * *
2238002 GCAAGAAAGGCATTCTTCCCACCAATTTTTGCAAAGTCTAAGT-TCGTGCCTCAACTGAGACAAA
515 GCAAGAAAGTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCT-ATGCCTCAAGTGAGACAAA
* * *
2238066 AATGGATTCTAGTAATAATCTTCACTCATTTTATGAT
579 CATGGATTCTAGTAATAATCTTCATTCATTTTGTGAT
2238103 ATTGATGATT
Statistics
Matches: 12933, Mismatches: 1553, Indels: 811
0.85 0.10 0.05
Matches are distributed among these distances:
915 2 0.00
916 106 0.01
917 677 0.05
918 45 0.00
919 1 0.00
921 1 0.00
922 1 0.00
923 4 0.00
924 1 0.00
926 2 0.00
927 2 0.00
930 1 0.00
931 2 0.00
938 2 0.00
939 1 0.00
940 1 0.00
941 2 0.00
942 4 0.00
943 10 0.00
944 1 0.00
945 2 0.00
946 10 0.00
947 19 0.00
948 579 0.04
949 1020 0.08
950 3582 0.28
951 3759 0.29
952 2230 0.17
953 80 0.01
954 22 0.00
955 6 0.00
956 8 0.00
957 2 0.00
958 3 0.00
959 7 0.00
960 5 0.00
961 3 0.00
965 6 0.00
966 5 0.00
967 4 0.00
968 5 0.00
969 6 0.00
970 6 0.00
971 3 0.00
973 6 0.00
974 2 0.00
975 3 0.00
976 10 0.00
977 11 0.00
978 3 0.00
979 2 0.00
980 6 0.00
982 6 0.00
983 5 0.00
984 5 0.00
985 4 0.00
986 3 0.00
987 5 0.00
988 5 0.00
992 3 0.00
993 6 0.00
994 7 0.00
995 3 0.00
996 2 0.00
997 9 0.00
998 12 0.00
999 24 0.00
1000 21 0.00
1001 21 0.00
1002 9 0.00
1003 202 0.02
1004 140 0.01
1005 131 0.01
1006 11 0.00
1007 5 0.00
1008 2 0.00
1009 2 0.00
1010 6 0.00
1011 3 0.00
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (951 bp):
TCTTCTCATTAGGATAGACGAAATTGATGCTTTGGTTTTGCAAGAAAGGTTTTCTTCCCACCAAT
TTTTGTAAAGTCTAAGTCTAGGCCTCAAGTGAGACAAACATGGATTCTAGTAATAATCTTCATTC
ATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATAAATAATATTGATGGTTTTCTT
TTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAAGCA
AGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCA
TTAGGATACATGACATTGACGCTTTGGTGTCGCAAGAAAAGGTTTCTTTCCTCCGTTTTTGATAG
AATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACTAATCCCTATTCTTTTCAGG
ATTTGGCACTATAAACATAGTCTTCTCATTAGGATAGACGAAATTGATGCTTTTGGTTTGCAAGA
AAGTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAACATGGAT
TCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGATAA
AAGATATTGATGGTTTTCTTTTGCATGAAATTCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAG
TTCATCCCTTAAAAAAGGCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAA
CCAAAAACACATTCCTTTCGTTAGGATACATGACATTGACACTTTGGTGTCGCAAGAAAAGGTTT
TCTTTCCTCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTA
CTAATCCCTATTCTTTTCAGGATTTGGCACTATAAACATAG
Found at i:2227199 original size:158 final size:156
Alignment explanation
Indices: 2224668--2227675 Score: 392
Period size: 159 Copynumber: 19.0 Consensus size: 156
2224658 AAATTGTTGA
* * *
2224668 TTTGGTTTCGCAAGAAAGTCTTTCTTCCCACTAATTTTTCTAAAGTCTAAGTCTATGCCTCAAGT
1 TTTGGTTTCGCAAGAAAGTCTTTCTTCCCACTAATTTTTCTAAAGTCAAAGTCTAGGCCTCAAAT
* * * *
2224733 GAGACAAAC-TTAGATTCTAGTAATAATCTTCATTCATTTT-GTGATTAGGCACT-AAAACACAT
66 AAGACAAACATGAG-TTCTAGTAATAATCCTCATTC-TTTTCGTGATTCGGCACTAAAAACACAT
* ** *
2224795 TCTCCTCATTAGGATAAAAGGTATTGTTGG
129 TCTCCTCATTAGGATAAAA--AATTGACGC
** * * * * * * ** *
2224825 TTTTATTTTGCATGAAAATCTTTTCTTTGCC-CT-ATTTTCCTTAAAATCAAAG-CTCATCCCTT
1 TTTGGTTTCGCAAGAAAGTC-TTTC-TTCCCACTAATTTTTC-TAAAGTCAAAGTCT-AGGCCTC
* ** * * * * * ** * * * *
2224887 AAATAAGGCATGCTTTGA-TTCTTGTAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACC
62 AAATAAGACAAAC-ATGAGTTCTAGTAATAATCCTCATTCTTTTCGTGATTCGGCACTAAAAACA
* ** * ** * * *
2224951 CATACTTTTCTTTAGGATACCCGACATTAATGC
126 CATTCTCCTCATTAGGATA--AAAAATTGACGC
* * * * * * * *
2224984 TTTGGTGTC-AAAGGAAAAGGT-TTTCTTTCCTCT-GTTTTTAATAGAA-TCAAAGT-TTGTCTC
1 TTTGGTTTCGCAA-G-AAA-GTCTTTCTTCCCACTAATTTTT-CTA-AAGTCAAAGTCTAGGC-C
* * * * *
2225044 TTAAATAAGACAAACATGATTAGTCT--TACTAATCCTCATTCTTTTC-TGGATTTGGCACTATA
60 TCAAATAAGACAAACATGAGT--TCTAGTAATAATCCTCATTCTTTTCGT-GATTCGGCACTAAA
* * * * * *** *
2225106 AATATAGTCTTCTCATTAGCATGGGCGAAATTGATGC
122 AACACATTCTCCTCATTAGGAT--AAAAAATTGACGC
* * * * *
2225143 TTTGGTTTCGCAAGAAAGTCTTTCTTCCCACTAAATTTTCTAGAGTCTAAGTCTATGCCTCAAGT
1 TTTGGTTTCGCAAGAAAGTCTTTCTTCCCACTAATTTTTCTAAAGTCAAAGTCTAGGCCTCAAAT
* * * * *
2225208 GAGAGAAACTTG-GATTCTAGTAATAATCTTCATTCATTTT-GTGATTAGGCACTAAAAACACAT
66 AAGACAAACATGAG-TTCTAGTAATAATCCTCATTC-TTTTCGTGATTCGGCACTAAAAACACAT
* * * *
2225271 TCTCCTCATTAGGATAAAAGGTATTTATGG
129 TCTCCTCATTAGGATAAAA--AATTGACGC
** * * * * * * *
2225301 TTTTATTTTGCATGAAAATCTTTTCTTTGCC-CT-ATTTTCCTTAAAATCAAAG-CTCA-TCTCT
1 TTTGGTTTCGCAAGAAAGTC-TTTC-TTCCCACTAATTTTTC-TAAAGTCAAAGTCT-AGGC-CT
* * ** * * * * * * ** * * *
2225362 TAAATAAGGCATGCTTTGA-TTCTTGTAACAGTCCCCGTTCTTTTCAAGATTGGGAACCAAAAAC
61 CAAATAAGACAAAC-ATGAGTTCTAGTAATAATCCTCATTCTTTTCGTGATTCGGCACTAAAAAC
* * * * ** * * *
2225426 CCATAC-CTTTCGTTAGGATACCCGACATTAATGC
125 ACATTCTC-CTCATTAGGATA--AAAAATTGACGC
* * * * * * * *
2225460 TTTGGTGTC-AAAGGAAAAGGT-TTTCTTTCCTC-CATTTTTGATAGAA-TCAAAGT-TTGTCTC
1 TTTGGTTTCGCAA-G-AAA-GTCTTTCTTCCCACTAATTTTT-CTA-AAGTCAAAGTCTAGGC-C
* * ** * *
2225520 TTAAATAAAACAAACATGA--T-TAGTCTTACCGATCC-CTATTCTTTTCAG-GATTTGGCTCTA
60 TCAAATAAGACAAACATGAGTTCTAGTAATA---ATCCTC-ATTCTTTTC-GTGATTCGGCACTA
* * * * * * *
2225580 TAAACATAGTCTTCTCAATAGGATAGACGAAATTGATGC
120 AAAACACATTCTCCTCATTAGGATA-A-AAAATTGACGC
* * * *
2225619 TTTCGTTTTGCAAGAAAGGT-TTTCTTCCCA-TCAATTTTTGTAAAGTCTAAGTCTAGGCCTCAA
1 TTTGGTTTCGCAAGAAA-GTCTTTCTTCCCACT-AATTTTTCTAAAGTCAAAGTCTAGGCCTCAA
* * * * *
2225682 GTGAGACAAACATGGGTTCTAATAATAATCTTCATTCATTTT-GTGATTCGGCACTAAAAACACA
64 ATAAGACAAACATGAGTTCTAGTAATAATCCTCATTC-TTTTCGTGATTCGGCACTAAAAACACA
* *
2225746 TTCTCCTCATTAGGATAAATAATATTGATGGG
128 TTCTCCTCATTAGGATAAA-AA-ATTGA-CGC
* * * * * ** * * * *
2225778 TTT-CTTT-GTATGAAAATCTTTTCTTTGCC-CT-ATTTCCCTTAAAATCAAAGTTTATG-CTGT
1 TTTGGTTTCGCAAGAAAGTC-TTTC-TTCCCACTAATTTTTC-TAAAGTCAAAGTCTAGGCCT-C
* * * * ** * * *
2225838 AAAT-AGAGCAAGCATTGA-TTCTTGTAACAGT-CTCTACTT-TTTTCAAGATTGGGAACCAAAA
62 AAATAAGA-CAAACA-TGAGTTCTAGTAATAATCCTC-A-TTCTTTTCGTGATTCGGCACTAAAA
* * * * *
2225899 ACACATTC-CCTTCATTATGATACATGACATTGGCAC
123 ACACATTCTCC-TCATTAGGATA-A-AAAATTGACGC
* * * ** * *
2225935 TTTGGTGTGGCAAGAAAAGGT-TTCCTTCCTC-CGT--TTTTGATAGAA-TCAAAGT-TTGTCTC
1 TTTGGTTTCGCAAG-AAA-GTCTTTCTTCC-CAC-TAATTTTTCTA-AAGTCAAAGTCTAGGC-C
* * * ** * *
2225994 TTAAATAATACAAACATGATTAGTCT--TACCAATCC-CGATTCTTTTCAG-GATTTGGCACTAT
60 TCAAATAAGACAAACATGAGT--TCTAGTAATAATCCTC-ATTCTTTTC-GTGATTCGGCACTAA
* * * *** *
2226055 AAACATAGTCTTCTCATTAGGATGGGCGAAATTGATGC
121 AAACACATTCTCCTCATTAGGAT--AAAAAATTGACGC
* * *
2226093 TTTGGTTTCGCAAGAAAGTCTTTCTTCCCACTAATTTTTCTAAAGTCTAAGTCTATGCCTCAAGT
1 TTTGGTTTCGCAAGAAAGTCTTTCTTCCCACTAATTTTTCTAAAGTCAAAGTCTAGGCCTCAAAT
* * * *
2226158 GAGACAAACTTG-GATTCTAGTAATAATCTTCATTCATTTT-GTGATTAGGCACTAAAAACACAT
66 AAGACAAACATGAG-TTCTAGTAATAATCCTCATTC-TTTTCGTGATTCGGCACTAAAAACACAT
* * * *
2226221 TCACCTCATTAGGATAAAAGGTATTGATGG
129 TCTCCTCATTAGGATAAAA--AATTGACGC
** * * * * * * ** *
2226251 TTTTATTTTGCATGAAAATCTTTTCTGTGCC-CT-ATTTTCCTTAAAATCAAAG-CTCATCCCTT
1 TTTGGTTTCGCAAGAAAGTC-TTTCT-TCCCACTAATTTTTC-TAAAGTCAAAGTCT-AGGCCTC
* * * * * * * * * *
2226313 AAATAATACAAGCTTTGA-TTCTTGCAACAGT-CTCCATTCTTCTCAG-GATTGGGAACTAAAAA
62 AAATAAGACAAAC-ATGAGTTCTAGTAATAATCCT-CATTCTTTTC-GTGATTCGGCACTAAAAA
* * **
2226375 CACATTC-CCTTCATTAGGGTACAAGACATTGGTGC
124 CACATTCTCC-TCATTAGGATA-AA-AAATTGACGC
* * * * * ** * *
2226410 TTTGGTGTAGTAAGAAAAGTTTTTCTTTCCAC-CGTTTTTGATAGAA-TCAAAG--TACGCCTCC
1 TTTGGTTTCGCAAG-AAAGTCTTTCTTCCCACTAATTTTT-CTA-AAGTCAAAGTCTAGGCCT-C
* * ** * * *
2226471 TACATAAGACAAATACGATAAGTT-T--TTCTAATCCCCATTCTTTTCAG-GATTTGGCACTATA
62 -AAATAAGAC-AA-AC-ATGAGTTCTAGTAATAATCCTCATTCTTTTC-GTGATTCGGCACTAAA
* * * * ** *
2226532 AATATAGTCTTCTCATTAGGATTGACTAAATTGATGC
122 AACACATTCTCCTCATTAGGA-T-AAAAAATTGACGC
* * * * * * * * * **
2226569 TTTGTTTTTGCAAGAAAGGCTTTCTTCCCACCAA-TCTTCGTAAAGTCTAAGCCCATGCCTCAGG
1 TTTGGTTTCGCAAGAAAGTCTTTCTTCCCACTAATTTTTC-TAAAGTCAAAGTCTAGGCCTCAAA
* * ** * *
2226633 TGAGACAAACATGGGTTCTAGTAATAATTTTCATTCATTTT-GTAATTTGGCACTAAAAACACAT
65 TAAGACAAACATGAGTTCTAGTAATAATCCTCATTC-TTTTCGTGATTCGGCACTAAAAACACAT
* * *
2226697 TCTCCTCATTAGGATAAAAGGTATTGATGG
129 TCTCCTCATTAGGATAAAA--AATTGACGC
** * * * * * * * ** *
2226727 TTTTCTTTTGGATGAAATTCTTTTCTTTGCC-CT-ATTTTCCTTAAAATCAAAG-CTCATCCCTT
1 TTTGGTTTCGCAAGAAAGTC-TTTC-TTCCCACTAATTTTTC-TAAAGTCAAAGTCT-AGGCCTC
* * * * * * * ** * * * *
2226789 AAAAAAGGCAAGCTTTGA-TTCTTA-TAACAGTCCCCATTCTTTTCAAGACTGGGAACCAAAAAC
62 AAATAAGACAAAC-ATGAGTTC-TAGTAATAATCCTCATTCTTTTCGTGATTCGGCACTAAAAAC
* * * ** * *
2226852 ATATTC-CTTTCGTTAGGATACCCGACATTGACGT
125 ACATTCTC-CTCATTAGGATA--AAAAATTGACGC
* ** * * *** * * ** *
2226886 TTTGGTGTCAAAAGAAAAGGT-TTTCTTTCCTCCGTTTTTTATAAAATCAAAGT-T-TTCTTCTA
1 TTTGGTTTCGCAAG-AAA-GTCTTTCTTCCCACTAATTTTTCTAAAGTCAAAGTCTAGGCCTC-A
* * * * * * **
2226948 AATAAGACAAACACGAATAGTCTTGCTAAT--CCCTAATTCTTTTCAG-GATTTGGCACTGTAAA
63 AATAAGACAAACATGAGT--TCTAG-TAATAATCCTCATTCTTTTC-GTGATTCGGCACTAAAAA
* * *
2227010 CATAGTCTTCTCATTAGGATAGGAAAAATTGACGC
124 CACATTCTCCTCATTAGGATA--AAAAATTGACGC
* **
2227045 TTTGGTTTCGCAAGAAAGTCTTTCTTCCCACTAATTTTTCTAAAGTCTAAGTCTAGGCCTCAGGT
1 TTTGGTTTCGCAAGAAAGTCTTTCTTCCCACTAATTTTTCTAAAGTCAAAGTCTAGGCCTCAAAT
* **
2227110 GAGACAAACATGAGTTCTAGTAATAATTTTCATTCATTTT-GTGATTCGGCACTAAAAACACATT
66 AAGACAAACATGAGTTCTAGTAATAATCCTCATTC-TTTTCGTGATTCGGCACTAAAAACACATT
* *
2227174 CTCCTCATTAGGATAAATAATATTGATGG
130 CTCCTCATTAGGATAAA-AA-ATTGACGC
** * * * * * * *
2227203 TTTTCTTTTGCATGAAATTCTTTTCTTTGCC-CT-ATTTTCCTTAAAATCAAAG-CTCA-TCTCT
1 TTTGGTTTCGCAAGAAAGTC-TTTC-TTCCCACTAATTTTTC-TAAAGTCAAAGTCT-AGGC-CT
* * * * * * * * ** * * * *
2227264 TAAAAAAGGCAAGCTTTGA-TTCTTA-TAACAGTCCCCATTCTTTTCAAGACTGGGAACCAAAAA
61 CAAATAAGACAAAC-ATGAGTTC-TAGTAATAATCCTCATTCTTTTCGTGATTCGGCACTAAAAA
* * * ** * **
2227327 CATATTC-CTTTCGTTAGGATACCCGACATTGACAT
124 CACATTCTC-CTCATTAGGATA--AAAAATTGACGC
* ** * * *** * ** *
2227362 TTTGGTGTCAAAAGAAAAGGT-TTTCTTTCCTCCGTTTTTTATAGAA-TCAAAGT-T-TTCTTCT
1 TTTGGTTTCGCAAG-AAA-GTCTTTCTTCCCACTAATTTTTCTA-AAGTCAAAGTCTAGGCCTC-
* * * * * * *
2227423 AAATAAGACAAACACGAATAGTCTTGCTAAT--CCCTAATTCTTTTCAG-GATTTGGCACTATAA
62 AAATAAGACAAACATGAGT--TCTAG-TAATAATCCTCATTCTTTTC-GTGATTCGGCACTAAAA
* * *
2227485 ACATAGTCTTCTCATTAGGATAGGAAAAATTGACGC
123 ACACATTCTCCTCATTAGGATA--AAAAATTGACGC
* *
2227521 TTTGGTTTCGCAAGAAAGTCTTTCTTCCCACTAATTTTTCTAAAGTCTAAGTCTAGGCCTCAAGT
1 TTTGGTTTCGCAAGAAAGTCTTTCTTCCCACTAATTTTTCTAAAGTCAAAGTCTAGGCCTCAAAT
* **
2227586 GAGACAAACATG-GATTCTAGTAATAATTTTCATTCATTTT-GTGATTCGGCACTAAAAACACAT
66 AAGACAAACATGAG-TTCTAGTAATAATCCTCATTC-TTTTCGTGATTCGGCACTAAAAACACAT
2227649 TCTCCTCATTAGGATAAATAATATTGA
129 TCTCCTCATTAGGATAAA-AA-ATTGA
2227676 TGGTTTTCTT
Statistics
Matches: 1980, Mismatches: 640, Indels: 461
0.64 0.21 0.15
Matches are distributed among these distances:
155 5 0.00
156 34 0.02
157 121 0.06
158 816 0.41
159 874 0.44
160 100 0.05
161 28 0.01
162 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (156 bp):
TTTGGTTTCGCAAGAAAGTCTTTCTTCCCACTAATTTTTCTAAAGTCAAAGTCTAGGCCTCAAAT
AAGACAAACATGAGTTCTAGTAATAATCCTCATTCTTTTCGTGATTCGGCACTAAAAACACATTC
TCCTCATTAGGATAAAAAATTGACGC
Found at i:2228928 original size:158 final size:159
Alignment explanation
Indices: 2228290--2235593 Score: 1022
Period size: 158 Copynumber: 46.1 Consensus size: 159
2228280 TTGGTGTCAA
* * * *
2228290 AAGAAAAGGTTTTCTTTCCTCCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
1 AAGAAAAGGTTTCCTTCCCTCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* * * * * * * *
2228355 AGATTAGTCT-TACCGATCCCTATTCTTTTCCGGACTTGGCACTATAAACATAGTCTTCTCAATA
66 TGATT-GTCTGTAACAATCCCTATTCTTTTCAGGATTTGGCACTAAAAACACAGTCTTCTCATTA
*
2228419 GGATAGATGAAATTGATGCTTTGGTTTTGC
130 GGATAGATAAAATTGATGCTTTGGTTTTGC
* * * * * * ** *
2228449 AAG-AAAGGTTTTCTTCCCATCAATTTTTG-TA-AAGTCTAAGTCTAGGC-CTCAGGTGAGACAA
1 AAGAAAAGGTTTCCTTCCC-TCCATTTTTGATAGAA-TCAAAGT-TTGTCTCTTAAATAAGACAA
** * ** * *
2228510 ACATGGGT-TCTAGTAATAAT-TTTCATTCATTTT--GTGATTTGGCACTAAAAACACATTCTCC
63 ACATGATTGTCT-GTAACAATCCCT-ATTC-TTTTCAG-GATTTGGCACTAAAAACACAGTCTTC
* * * ** *
2228571 TCATTAGGATAAATAATATTGATGGTTTTCTTTTGT
124 TCATTAGGATAGATAAAATTGATGCTTTGGTTTTGC
* *** * **** * * * *
2228607 ATGAAATTCTTTTCTTTGCCCT--ATTTCCCTTAAAATCAAAGTTTATGTCGTAAATAA-AGCAA
1 AAGAAA-AGGTTTCCTT-CCCTCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA-CAA
* * ** * * * * * *
2228669 GCATTGATTCT-TGTAACGGTCTCTACTT-TTTTCAAGATTGGGAACCAAAAACACATTCCTT-T
63 ACA-TGATTGTCTGTAACAATCCCTA-TTCTTTTCAGGATTTGGCACTAAAAACACAGT-CTTCT
* * * * ** ** *
2228731 TATTAGGATACATGACATTGACACTTTGGCATCGC
125 CATTAGGATAGATAAAATTGATGCTTTGGTTTTGC
*
2228766 AAGAAAAGGTTTCCTT-CCTCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAGCA
1 AAGAAAAGGTTTCCTTCCCTCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* * *
2228830 TGATTAGTCT-TACCAATCCCTATTCTTTTCAGGATTTGGCACTATAAACATAGTCTTCTCATTA
66 TGATT-GTCTGTAACAATCCCTATTCTTTTCAGGATTTGGCACTAAAAACACAGTCTTCTCATTA
*
2228894 GGATAGGTAAAATTGATGCTTTGGTTTTGC
130 GGATAGATAAAATTGATGCTTTGGTTTTGC
* * * * * * * *
2228924 AAG-AAA-GTCTTTCTTCCCACTAATTTTT-CTA-AAGTCTAAGTCTATG-C-CTCAAGTGAGAC
1 AAGAAAAGGT-TTCCTTCCCTC-CATTTTTGATAGAA-TCAAAGT-T-TGTCTCTTAAATAAGAC
* * * * *
2228983 AAACTTGGA-T-TCTAGTAATAAT-CTTCATTCATTTT--GTGATTAGGCACTAAAAACACATTC
61 AAACAT-GATTGTCT-GTAACAATCCCT-ATTC-TTTTCAG-GATTTGGCACTAAAAACACAGTC
* * * **
2229043 TCCTCATTAGGATA-A-AAGGTATTGATGGTTTTATTTTGC
121 TTCTCATTAGGATAGATAA--AATTGATGCTTTGGTTTTGC
* ** * * ** *
2229082 ATGAAAATCTTTTCTTTGCCCT--ATTTCCTT-A-A-AATCAAAGCTCATCCCTTAAATAATG-C
1 AAGAAAA-GGTTTCCTT-CCCTCCATTT--TTGATAGAATCAAAGTTTGTCTCTTAAATAA-GAC
** * * * * * * * * * * * *
2229141 ATGCTTTGATTCT-TATAACAGTCTCC-GTTCATTTCAAGATTGGGAACCATAAACACATTCCTT
61 AAAC-ATGATTGTCTGTAACAATC-CCTATTCTTTTCAGGATTTGGCACTAAAAACACAGT-CTT
* **** * * *
2229204 -TTATTAGGATACCCGACATTAATGCTTTGG-TGT-C
123 CTCATTAGGATAGATAAAATTGATGCTTTGGTTTTGC
* * **
2229238 AAAGGAAAAGGTTTTCTTTCCTCTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAA
1 -AA-GAAAAGGTTTCCTTCCCTCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAA
* ** *
2229303 C-TGATTAGTCT-T-ACTAAT-CCTCATTCTTTTCTGGATTTGGCACTATGAACATAGTCTTCTC
64 CATGATT-GTCTGTAAC-AATCCCT-ATTCTTTTCAGGATTTGGCACTAAAAACACAGTCTTCTC
* ** * * **
2229364 AATAGGATAGACGAAATTGATGCTTTTGCTTTAT
126 ATTAGGATAGATAAAATTGATGCTTTGGTTTTGC
* * * * * * *
2229398 AAG-AAA-GTCTTTCTTCCCACCAATTTTTGGTA-AAGTCTAAGTCTATG-C-CTCAAGTGAGAC
1 AAGAAAAGGT-TTCCTTCCCTCC-ATTTTTGATAGAA-TCAAAGT-T-TGTCTCTTAAATAAGAC
* * * ** *
2229458 AAACATGGA-T-TCTAGTAATAAT-CTTCATTCATTTTGA-GATTAAGCACTAAAAACACATTCT
61 AAACAT-GATTGTCT-GTAACAATCCCT-ATTC-TTTTCAGGATTTGGCACTAAAAACACAGTCT
* * * * * **
2229519 CCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGC
122 TCTCATTAGGATAGATAAAATTGATGCTTTGGTTTTGC
* ** * *** * * ** * *
2229557 ATGAAAATCTTTTCTTTGCCCT--ATTTTCCTTAAAATCAAAGCTCATCTCTTAAATAAGGCAAG
1 AAGAAAA-GGTTTCCTT-CCCTCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAA
* * * ** * * * *
2229620 CTTTGATTCT-TGTAACAGTCCCTATTCTTTTCAAAATTAGGAACCAAAAACACATTCCTT-TCG
64 C-ATGATTGTCTGTAACAATCCCTATTCTTTTCAGGATTTGGCACTAAAAACACAGT-CTTCTC-
* **** * * ***
2229683 A-TAGGACACCCGACATTGATGCTTTGGTGTCAA
126 ATTAGGATAGATAAAATTGATGCTTTGGTTTTGC
* * *
2229716 AAGAAAAGGTTTTCTTTCCTCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAAT-AGACAAATA
1 AAGAAAAGGTTTCCTTCCCTCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* * * ** *
2229780 CGATAAGTCT-T-ACTAATCCCCATTCTTTTCAGGATTTGGCACTAAAAACATTGTCTTCTCAGT
66 TGAT-TGTCTGTAAC-AATCCCTATTCTTTTCAGGATTTGGCACTAAAAACACAGTCTTCTCATT
* * *
2229843 AGGATTGATTAAATTGATGCTTTGTTTTTGC
129 AGGATAGATAAAATTGATGCTTTGGTTTTGC
* * ** * ** * * *
2229874 AAG-AAAGGCTTT-CTTCCCACCAATCTACG-TA-AAGTCTAAGCCCATG-C-CTCAAGTGAGAC
1 AAGAAAAGG-TTTCCTTCCCTCC-ATTTTTGATAGAA-TCAAAG--TTTGTCTCTTAAATAAGAC
** * * * *
2229933 AAACATGGA-T-TCTAGTAATTAT-CTTCACTCATTTT--GTGATTAGGCA-TATAAAACACATT
61 AAACAT-GATTGTCT-GTAACAATCCCT-ATTC-TTTTCAG-GATTTGGCACTA-AAAACACAGT
* * *** * *
2229992 CTCCTCATTAGGATAAATATTGTTGATGGTTT-TTTTTGC
120 CTTCTCATTAGGATAGATAAAATTGATGCTTTGGTTTTGC
* ** ** *** * ** *
2230031 ATGAAAATCTTGTGTTTGCCCT--ATTTTCCTTAAAATCAAAGTTCATC-CAGTAAATAA-AGCA
1 AAGAAAAGGTT-TCCTT-CCCTCCATTTTTGATAGAATCAAAGTTTGTCTC-TTAAATAAGA-CA
* * * * * * * *
2230092 AGCATTGATTCT-TGTAATAGTCTCC-A-T-TTTTCAAGATTTGGAACCAAAAACACATTCCTT-
62 AACA-TGATTGTCTGTAACAATC-CCTATTCTTTTCAGGATTTGGCACTAAAAACACAGT-CTTC
* ** * ** * *
2230152 TCATTTGGATACCTGACTTTGACGCTTTGG-TGT-C
124 TCATTAGGATAGATAAAATTGATGCTTTGGTTTTGC
* * * * *
2230186 ATAGGAAAAGGTTTTCTTTCCTCCGTTTTTTATAGAATCAAAGTTTATCTCTTAAATAAGACAAA
1 A-A-GAAAAGGTTTCCTTCCCTCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAA
* * * * *
2230251 TATGATTAGTCT-T-ACTAATACCTAGTCTTTTCAGGATTTGGCACTATAAACATAGTCTTCTCA
64 CATGATT-GTCTGTAAC-AATCCCTATTCTTTTCAGGATTTGGCACTAAAAACACAGTCTTCTCA
* ** *
2230314 ATAGGATAGACGAAATTGATGCTTTGGCTTTGC
127 TTAGGATAGATAAAATTGATGCTTTGGTTTTGC
* * * * * *
2230347 AAG-AAAGGTTTTCTTCCCACCAATTTTTG-TA-AAGTCTAAGTCTATG-C-CTCAAGTGAGACA
1 AAGAAAAGGTTTCCTTCCCTCC-ATTTTTGATAGAA-TCAAAGT-T-TGTCTCTTAAATAAGACA
* * * *
2230407 AACATGGA-T-TCTAGTAATAAT-CTTCATTCATTTT--GTGATTTGGCACTTAAAACACATTCT
62 AACAT-GATTGTCT-GTAACAATCCCT-ATTC-TTTTCAG-GATTTGGCACTAAAAACACAGTCT
* * ** * **
2230467 CCTCATTAGGATAAATATTATTGATGGTTTTCTTTTGC
122 TCTCATTAGGATAGATAAAATTGATGCTTTGGTTTTGC
* ** ** * * *** * ** * *
2230505 ATGAAAATCTTTTTTTTGCCT-TATTTTCCTTAAAATCAAAGTTCATCTCGTAAATAA-AGCAAG
1 AAGAAAA-GGTTTCCTTCCCTCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA-CAAA
* ** * * * * * * * * *
2230568 CATTGATTCT-TGTAGTAGTCTGC-ATTTTTTTTAAGATTGGGAACCAAAAACACATTCCCTTCT
64 CA-TGATTGTCTGTAACAATC-CCTATTCTTTTCAGGATTTGGCACTAAAAACACAGT--CTTCT
* * * ** * * *
2230631 --TTAGGATACATGACATTGACACTTTGGTGTCGG
125 CATTAGGATAGATAAAATTGATGCTTTGGTTTTGC
* * * *
2230664 AAGAAAAGGTTTCCTTCCCACCGTTTTTGATAGAATCGAAGTTT-TCGT-TTAAATAAGACAAAT
1 AAGAAAAGGTTTCCTTCCCTCCATTTTTGATAGAATCAAAGTTTGTC-TCTTAAATAAGACAAAC
* * * * * *
2230727 ATGAATAGTCT-T-GCTAATCCCTAATTCTTTTCAAGATTTGGCACTATAGACATAGTCTTCTCA
65 ATG-ATTGTCTGTAAC-AATCCCT-ATTCTTTTCAGGATTTGGCACTAAAAACACAGTCTTCTCA
* * **
2230790 ATAGGATAAACGAAATTGATGCTTTGGTTTTGC
127 TTAGGATAGATAAAATTGATGCTTTGGTTTTGC
* * * * * * * *
2230823 AAG-AAAGGTTTTCTTCCCATCAATTTTTG-TA-AAGTCTAAGTCTAGGC-CTCAAGTGAGACAA
1 AAGAAAAGGTTTCCTTCCC-TCCATTTTTGATAGAA-TCAAAGT-TTGTCTCTTAAATAAGACAA
* * * * * *
2230884 ACATGGA-T-TCTAGTAATAAT-CTTCATTCATTTT--GTGATTCGGCTCTAAAAACACATTCTC
63 ACAT-GATTGTCT-GTAACAATCCCT-ATTC-TTTTCAG-GATTTGGCACTAAAAACACAGTCTT
** * * * ** *
2230944 CTTTTTAGGATAAATAATATTGATGGTTTTCTTTTGT
123 CTCATTAGGATAGATAAAATTGATGCTTTGGTTTTGC
* ** *** * ** * *
2230981 ATGAAAATCTTTTCCTTGCCCT--ATTTTCCTTAAAATCAAAGTTCATCCCGTAAATAA-AGCAA
1 AAGAAAA-GGTTTCCTT-CCCTCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA-CAA
* * * * * * * * * *
2231043 GCATTGATTCT-TGAAACAGTCTCC-ATTTTTTTCAAGATTGGGAACCAAAAACACATTCCCTT-
63 ACA-TGATTGTCTGTAACAATC-CCTATTCTTTTCAGGATTTGGCACTAAAAACACAGT--CTTC
* * * * ** * *
2231105 T-AGTAGGATACATGAGATTGACACTTTGGTGTCGC
124 TCATTAGGATAGATAAAATTGATGCTTTGGTTTTGC
* * ** * * *
2231140 AAGAAAAGGATTCCTTCCCACTGTTTTTGATAGTATCAAAGTTT-TCTTTTAAATAAGACAAACT
1 AAGAAAAGGTTTCCTTCCCTCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* * * * *
2231204 TGAATAGTCT-T-GCTAATCCCTAATTCTTTTCAGGATTTGGCACTATAAACATAGTCTTCTCTT
66 TG-ATTGTCTGTAAC-AATCCCT-ATTCTTTTCAGGATTTGGCACTAAAAACACAGTCTTCTCAT
** * *
2231267 TAGGATAGACGAAATTAATGCTTTGGTTTCGC
128 TAGGATAGATAAAATTGATGCTTTGGTTTTGC
* * * * * * * *
2231299 AAG-AAA-GTCTTACTTCCCGCCAATTTTT-CTA-AAGTCTAAGTCTACG-C-CTCAAGTGAGAC
1 AAGAAAAGGT-TTCCTTCCCTCC-ATTTTTGATAGAA-TCAAAGT-T-TGTCTCTTAAATAAGAC
* * * *
2231358 AAACATGGA-T-TCTAGTAATAAT-CTTCATTCATTTT--GTGATTAGGCACTAAAAACACATTC
61 AAACAT-GATTGTCT-GTAACAATCCCT-ATTC-TTTTCAG-GATTTGGCACTAAAAACACAGTC
* * * * * * **
2231418 TCCTCATTAGGATAAATGATATTGGTGGTTTTCTTTTGC
121 TTCTCATTAGGATAGATAAAATTGATGCTTTGGTTTTGC
* *** * *** * ** * * * * *
2231457 ATGAAATTTTTTCCGTT--GTCCTATTTTCCTTAAAATCAAAGTTCATCCCTGAAAAAAGGCAAG
1 AAGAAAAGGTTTCC-TTCCCTCC-ATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAA
* * * * * * * *
2231520 CATTGATTCT-TGCAACAGTCTCC-ATTCTTTTCAAGATTAGGAACTAAAAACACATTC-CCTTC
64 CA-TGATTGTCTGTAACAATC-CCTATTCTTTTCAGGATTTGGCACTAAAAACACAGTCTTC-TC
* **** * ** * ***
2231582 GTTAGGATACCCGACATTGACACTTTGGTGTCAA
126 ATTAGGATAGATAAAATTGATGCTTTGGTTTTGC
* * *
2231616 AAGAAAAGGTTTTCTTTCCTCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
1 AAGAAAAGGTTTCCTTCCCTCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* * * * *
2231681 TGATTAGTCT-TACCGATCCCTATTCTTTTCAGGATTTGGCACTATAAACATAGTCTTCTCAATA
66 TGATT-GTCTGTAACAATCCCTATTCTTTTCAGGATTTGGCACTAAAAACACAGTCTTCTCATTA
*
2231745 GGATAGATGAAATTGATGCTTTGGTTTTGC
130 GGATAGATAAAATTGATGCTTTGGTTTTGC
* * * * * * ** *
2231775 AAG-AAAGGTTTTCTTCCCATCAATTTTTG-TA-AAGTCTAAGTCTAGGC-CTCAGGTGAGACAA
1 AAGAAAAGGTTTCCTTCCC-TCCATTTTTGATAGAA-TCAAAGT-TTGTCTCTTAAATAAGACAA
* * * * *
2231836 ACATGGA-T-TCTAGTAACAAT-CTTCACTCATTTT--GTGATTAGGCACAAAAAACACATTCTT
63 ACAT-GATTGTCT-GTAACAATCCCT-ATTC-TTTTCAG-GATTTGGCACTAAAAACACAGTCTT
* * ** *
2231896 CTCATTAGGATA-A-AAGGTATTGATGGTTTTCTTTCGC
123 CTCATTAGGATAGATAA--AATTGATGCTTTGGTTTTGC
* *** * * *** * * * ** * * *
2231933 ATGAAATTCTTTTCTTTGCCT--ATTTTCCTTAAAATGAAAGCTCATCCCTTAAATAAGGCAAGC
1 AAGAAA-AGGTTTCCTTCCCTCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
* * ** * * * * * * *
2231996 TTTGATTCT-TGTAACTGTCCCTGTTCTTTTCAAGATTGGGAACCAAAAACACATTCCTT-TTAT
65 -ATGATTGTCTGTAACAATCCCTATTCTTTTCAGGATTTGGCACTAAAAACACAGT-CTTCTCAT
* * * ** * *
2232059 TAGGATACATGACATTGACACTTTGGTGTCGC
128 TAGGATAGATAAAATTGATGCTTTGGTTTTGC
* * * * *
2232091 AAGGAAAGGTTTCATTCCCACCGTTTTTGATAGAATCAAAGTTT-TCTTTTAAATAAGACAAACA
1 AAGAAAAGGTTTCCTTCCCTCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* * * * *
2232155 TGAATAGTCT-T-ACTAATCCCTAATTCTTTTTAGGATTTGGCACTATAAACATAGTCCTCTCAT
66 TG-ATTGTCTGTAAC-AATCCCT-ATTCTTTTCAGGATTTGGCACTAAAAACACAGTCTTCTCAT
** *
2232218 TAGGATAGACGAAATTGATGCTTTGGTTTCGC
128 TAGGATAGATAAAATTGATGCTTTGGTTTTGC
* * * * * *
2232250 AAG-AAA-GTCTTTCTTCCCACCAACTTTT-CTA-AAGTCTAAA-TCTATG-C-CTCAAGTAAGA
1 AAGAAAAGGT-TTCCTTCCCTCC-ATTTTTGATAGAA-TC-AAAGT-T-TGTCTCTTAAATAAGA
* * * * *
2232308 TAAACATGGA-T-TCTAGTATTA-ATATTCAT-TTATTTT--GTGATTAGGCACTAAAAACAC-G
60 CAAACAT-GATTGTCT-GTA--ACA-ATCCCTATTCTTTTCAG-GATTTGGCACTAAAAACACAG
* * * * * * **
2232366 TTCTCCTCATTAGGATAAATGATATTTATGGTTTTCTTTTGC
119 -TCTTCTCATTAGGATAGATAAAATTGATGCTTTGGTTTTGC
* ** * *** * ** * * * *
2232408 ATGAAAATTTTTTCTTTGCCCT--ATTTTCCTTAAAATCAAAGTTCATCCCTTAAAAAAGGCAAG
1 AAGAAAA-GGTTTCCTT-CCCTCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAA
* * ** * * *
2232471 CATTGATTCT-TGCAACTGTCTCC-ATTCTTTTCAGGATTGGGAACTAAAAACACATTCCTT-TC
64 CA-TGATTGTCTGTAACAATC-CCTATTCTTTTCAGGATTTGGCACTAAAAACACAGT-CTTCTC
* * * * * * *
2232533 GTTAGGATACA-AGACATTGATGGTTTGATGTAGC
126 ATTAGGATAGATA-AAATTGATGCTTTGGTTTTGC
* * * * * * * * * * *
2232567 TA-AAAAGTTTTTCTTTCCACCGTTTTTGATAGAAACAAAGTATGTATCTTAAGTAAGACAAATA
1 AAGAAAAGGTTTCCTTCCCTCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* * * * * *
2232631 TGATAAGTC--TAACTAGTCCCCATTCTTTTCAGGATTCGGCACTATAAACATAGTCTTCTCATT
66 TGAT-TGTCTGTAAC-AATCCCTATTCTTTTCAGGATTTGGCACTAAAAACACAGTCTTCTCATT
* *
2232694 AGGATTGACT-AAATTGATGCTTTGTTTTTGC
129 AGGATAGA-TAAAATTGATGCTTTGGTTTTGC
* * * ** * *
2232725 AAG-AAAGGCTTT-CTTCCCACCAATCTTTG-TA-AAGTCTAAGCCCATG-C-CTTAAGTGAGAC
1 AAGAAAAGG-TTTCCTTCCCTCC-ATTTTTGATAGAA-TCAAAG--TTTGTCTCTTAAATAAGAC
* * * * * **
2232784 AAACATGGA-T-TCTAGTAATAAT-CTTCACTCATTTT--GTGATTAGGCACTAAAAA-GCTTTC
61 AAACAT-GATTGTCT-GTAACAATCCCT-ATTC-TTTTCAG-GATTTGGCACTAAAAACACAGTC
* * * **
2232843 TCCTCATTAGGATA-A-AAGGTATTGATGGTTTTCTTTTGC
121 TTCTCATTAGGATAGATAA--AATTGATGCTTTGGTTTTGC
* ** * *** * * * * *
2232882 ATGAAAATCTTTTCTTTGCCCT--ATTTTCCTTAAAATCAAAGCTTATCTCTTAAATAAGGCAAG
1 AAGAAAA-GGTTTCCTT-CCCTCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAA
* * * * * * * * * *
2232945 CTTTGATTCT-TGTAACAGT-CCTCGTTCGTTTCAAGATTGGGAACCAAAAACACATTCCTT-TC
64 C-ATGATTGTCTGTAACAATCCCT-ATTCTTTTCAGGATTTGGCACTAAAAACACAGT-CTTCTC
**** * * * ***
2233007 ATTAGGATACCCGACATTGACGCTTTGGTGTCAA
126 ATTAGGATAGATAAAATTGATGCTTTGGTTTTGC
* * * * *
2233041 AAGAAAAGGTTTTCTTTCCTCCGTTTTTGATAGAATCAAAGTCTGTCTCTTAAATAAGACACACA
1 AAGAAAAGGTTTCCTTCCCTCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* * * * * * * * *
2233106 TGATTAGTCT-TACCAATCCCCACTCTTTTCAAGATTTGGCACTATAGACATAGTCTTCTAAATA
66 TGATT-GTCTGTAACAATCCCTATTCTTTTCAGGATTTGGCACTAAAAACACAGTCTTCTCATTA
** *
2233170 GGAT-GACGAAATTAATGCTTTGGTTTTGC
130 GGATAGATAAAATTGATGCTTTGGTTTTGC
* * * * * * *
2233199 AAG-AAAGTTTTTCTTCCCATCAATTTTTG-TA-AAGTCTAAGTCTAGGACTC--AAGTAAGACA
1 AAGAAAAGGTTTCCTTCCC-TCCATTTTTGATAGAA-TCAAAGT-T-TGTCTCTTAAATAAGACA
* ** * * *
2233259 AACATGGA-T-TCTAGTAATAATCTTTATTCATTTT--GTGATTCGGCTCTAAAAACACATTC-T
62 AACAT-GATTGTCT-GTAACAATCCCTATTC-TTTTCAG-GATTTGGCACTAAAAACACAGTCTT
** * * * ** *
2233319 CTTTTTTAGGATAAATAATATTGATGGTTTTCTTTTGT
123 C-TCATTAGGATAGATAAAATTGATGCTTTGGTTTTGC
* ** * *** * **
2233357 ATGAAAATCTTTTCTTTGCCCT--ATTTTCCTTAAAATCAAAGTTCATC-CTGTAAATAA-AGCA
1 AAGAAAA-GGTTTCCTT-CCCTCCATTTTTGATAGAATCAAAGTTTGTCTCT-TAAATAAGA-CA
* * * * * * * * * *
2233418 AGCATTGATTCT-TGAAACAGTCTCC-ATTTTTTTCAAGATTGGGAACCAAAAACACATTCCCTT
62 AACA-TGATTGTCTGTAACAATC-CCTATTCTTTTCAGGATTTGGCACTAAAAACACAGT--CTT
* * * ** * *
2233481 -T-ATTAGGATACATGAGATTGACACTTTGGTGTCGC
123 CTCATTAGGATAGATAAAATTGATGCTTTGGTTTTGC
* * ** *
2233516 AAGAAAAGGATTCCTTCCCACTGTTTTTGATAGAATCAAAGTTT-TCTTTTAAATAAGACAAACA
1 AAGAAAAGGTTTCCTTCCCTCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* * * * * *
2233580 TTAATAGTCT-T-GCTAATCCCTAATTCTTTTCAGGATTTGGCACTATAAACATAGTCTTCTCTT
66 -TGATTGTCTGTAAC-AATCCCT-ATTCTTTTCAGGATTTGGCACTAAAAACACAGTCTTCTCAT
** * *
2233643 TAGGATAGACGAAATTAATGCTTTGGTTTCGC
128 TAGGATAGATAAAATTGATGCTTTGGTTTTGC
* * * * * * * *
2233675 AAG-AAA-GTCTTACTTCCCGCCAATTTTT-CTA-AAGTCTAAGTCTACG-C-CTCAAGTGAGAC
1 AAGAAAAGGT-TTCCTTCCCTCC-ATTTTTGATAGAA-TCAAAGT-T-TGTCTCTTAAATAAGAC
* * * *
2233734 AAACATGGA-T-TCTAGTAATAAT-CTTCATTCATTTT--GTGATTAGGCACTAAAAACACATTC
61 AAACAT-GATTGTCT-GTAACAATCCCT-ATTC-TTTTCAG-GATTTGGCACTAAAAACACAGTC
* * * * * * **
2233794 TCCTCATTAGGATAAATGATATTGGTGGTTTTCTTTTGC
121 TTCTCATTAGGATAGATAAAATTGATGCTTTGGTTTTGC
* *** * *** * ** * * * * *
2233833 ATGAAATTTTTTCCGTT--GTCCTATTTTCCTTAAAATCAAAGTTCATCCCTGAAAAAAGGCAAG
1 AAGAAAAGGTTTCC-TTCCCTCC-ATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAA
* * * * * * * *
2233896 CATTGATTCT-TGCAACAGTCTCC-ATTCTTTTCAAGATTAGGAACTAAAAACACATTC-CCTTC
64 CA-TGATTGTCTGTAACAATC-CCTATTCTTTTCAGGATTTGGCACTAAAAACACAGTCTTC-TC
**** * ** * ***
2233958 ATTAGGATACCCGACATTGACACTTTGGTGTCAA
126 ATTAGGATAGATAAAATTGATGCTTTGGTTTTGC
* * *
2233992 AAGAAAAGGTTTTCTTTCCTCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
1 AAGAAAAGGTTTCCTTCCCTCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* * * * * * *
2234057 TGATTATTCT-TACCGATCCCTATTCTTTTCAGGATTTGTCACTATAAACATAGTCTTCTCAATA
66 TGATT-GTCTGTAACAATCCCTATTCTTTTCAGGATTTGGCACTAAAAACACAGTCTTCTCATTA
** *
2234121 GGATAGACGAAATTGATGTTTTGGTTTTGC
130 GGATAGATAAAATTGATGCTTTGGTTTTGC
* * * * * * * ***
2234151 AAG-AAAGGTTTTCTTCCCATCAATTTTTG-TA-ATGTCTAAGTCTAGAC-C-TCAGGGAGACAA
1 AAGAAAAGGTTTCCTTCCC-TCCATTTTTGATAGA-ATCAAAGT-TTGTCTCTTAAATAAGACAA
* * * * *
2234211 ACATGGA-T-TCTAGTAACAAT-CTTCACTCATTTT--GTGATTAGGCACAAAAAACACATTCTT
63 ACAT-GATTGTCT-GTAACAATCCCT-ATTC-TTTTCAG-GATTTGGCACTAAAAACACAGTCTT
* * * **
2234271 CTCATTAGGATA-A-AAGGTATTTATGGTTTTCTTTTGC
123 CTCATTAGGATAGATAA--AATTGATGCTTTGGTTTTGC
* *** * *** * * * ** * * *
2234308 ATGAAATTCTTTTCTTTGCCCT--ATTTTCCTTAAAATGAAAGCTCATCCCTTAAATAAGGCAAG
1 AAGAAA-AGGTTTCCTT-CCCTCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAA
* * * * * * * * * * *
2234371 CTTTGATTCT-TCTAACAGTCCCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTT-TGA
64 C-ATGATTGTCTGTAACAATCCCTATTCTTTTCAGGATTTGGCACTAAAAACACAGT-CTTCTCA
* ** * * * * * *
2234434 TTTGGATACCTGACATTGACGCTTTGGTGTCGT
127 TTAGGATAGATAAAATTGATGCTTTGGTTTTGC
* * * * * * * *
2234467 AGGAAAAGGTTTTCTTTCTTCCGTTTTTTATAAAATCAAAGTTTATCTCTTAAATAAGACAAACA
1 AAGAAAAGGTTTCCTTCCCTCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* * * * *
2234532 TGATTAGTCT-T-ACTAATCCCCAATCTTTTCAGGATTTGGCACTATAAACATAGTCTTCTCAAT
66 TGATT-GTCTGTAAC-AATCCCTATTCTTTTCAGGATTTGGCACTAAAAACACAGTCTTCTCATT
**
2234595 AGGATAGACGAAATTGATGCTTTGGTTTTGC
129 AGGATAGATAAAATTGATGCTTTGGTTTTGC
* * * * * *
2234626 -AGGAAAGGTTTTCTTCCCACCAATTTTTG-TA-AAGTCTAAGTCTATG-C-CTCAAGA-GAGAC
1 AAGAAAAGGTTTCCTTCCCTCC-ATTTTTGATAGAA-TCAAAGT-T-TGTCTCTTAA-ATAAGAC
** * * * * *
2234685 AAACATGGGT-TCTAGTAATAAT-CTTCATTCATTTT--GTGATTCGGCACTAAAAGCACATTCT
61 AAACATGATTGTCT-GTAACAATCCCT-ATTC-TTTTCAG-GATTTGGCACTAAAAACACAGTCT
* * ** * **
2234746 CCTCATTAGGATAAATATTATTGATGGTTTTCTTTTGC
122 TCTCATTAGGATAGATAAAATTGATGCTTTGGTTTTGC
* ** * ** * * *
2234784 ATGAAAATCTTTCCTTTGCCCT--ATTTTCT-ATAAAATCAAAGTTCATCCCATAGATAA-AGCA
1 AAGAAAAGGTTTCC-TT-CCCTCCATTTT-TGATAGAATCAAAGTTTGTCTCTTAAATAAGA-CA
* * *** * * * * * * *
2234845 AGCATTGATTCT-TGTAATTGTCTCC-ATTTTTTTCAAGATTGGGAACCAAAAACACATTC-CCT
62 AACA-TGATTGTCTGTAACAATC-CCTATTCTTTTCAGGATTTGGCACTAAAAACACAGTCTTC-
* * * *** *
2234907 TCATTAGGATACATGACATTGACATTTTGGTGTTGC
124 TCATTAGGATAGATAAAATTGATGCTTTGGTTTTGC
* * * *
2234943 AAGAAAAGGTTTCCTTCCCACCGTTTTTGATAAAATCAAAGTTT-TCTTTTAAATAAGACAAACA
1 AAGAAAAGGTTTCCTTCCCTCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* * * * * **
2235007 TGAATAGTCT-T-GCTAATCCTTAATT-TTTTCTGGATTTGGCACTATAAACATGGTCTTCTCAT
66 TG-ATTGTCTGTAAC-AATCCCT-ATTCTTTTCAGGATTTGGCACTAAAAACACAGTCTTCTCAT
* **
2235069 TAGGATAGACAAAATTGATGCTTTGGTTTCAC
128 TAGGATAGATAAAATTGATGCTTTGGTTTTGC
* * ** * * * * * *
2235101 AAG-AAA-GTCTTTCTTCCCACCAACGTTT-CTA-AAGTCTAAGTCTATG-C-CTCAAGTGAGAT
1 AAGAAAAGGT-TTCCTTCCCTCC-ATTTTTGATAGAA-TCAAAGT-T-TGTCTCTTAAATAAGAC
* * *
2235160 AAACATGGA-T-TCTAGTAATAAT-CTTCATTCATTTT--GTGATTAGGCACTAAAAACAC-GTT
61 AAACAT-GATTGTCT-GTAACAATCCCT-ATTC-TTTTCAG-GATTTGGCACTAAAAACACAG-T
* * * * * * **
2235219 CTCCTCATTAGGATAAATGATATTTATGGTTTTCTTTTGC
120 CTTCTCATTAGGATAGATAAAATTGATGCTTTGGTTTTGC
* *** * *** * ** * * * *
2235259 ATGAAATTTTTTTCTTTACCCT--ATTTTCCTTAAAATCAAAGTTCATCCCTTAAAAAAGGCAAG
1 AAGAAA-AGGTTTCCTT-CCCTCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAA
* * * * * * *
2235322 CATTGATTCT-TGCAACAGTCTCTATTCTTTTCAGGATTAGGAACTAAAAACACATTCCTT-TCA
64 CA-TGATTGTCTGTAACAATCCCTATTCTTTTCAGGATTTGGCACTAAAAACACAGT-CTTCTCA
* * * * *
2235385 TTAGGATACA-AGACATTGATGGTTTGGTGTAGC
127 TTAGGATAGATA-AAATTGATGCTTTGGTTTTGC
* * * * * * * *
2235418 AA-AAAAGTTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTATGTCTCTTAAGTAAGACAAATA
1 AAGAAAAGGTTTCCTTCCCTCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* * * * * *
2235482 TGATAAGTC--TCACTAATCGCC-ATTCTTTTCAAGATTCGGCACTATAAACATAGTCTTCTCAT
66 TGAT-TGTCTGTAAC-AATC-CCTATTCTTTTCAGGATTTGGCACTAAAAACACAGTCTTCTCAT
* *
2235544 TAGGATTGACT-AAATTGATGCTTTGTTTTTGC
128 TAGGATAGA-TAAAATTGATGCTTTGGTTTTGC
2235576 AAG-AAAGGCTTT-CTTCCC
1 AAGAAAAGG-TTTCCTTCCC
2235594 ACCAATCTTT
Statistics
Matches: 4965, Mismatches: 1614, Indels: 1133
0.64 0.21 0.15
Matches are distributed among these distances:
155 17 0.00
156 112 0.02
157 533 0.11
158 2047 0.41
159 1992 0.40
160 200 0.04
161 58 0.01
162 6 0.00
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (159 bp):
AAGAAAAGGTTTCCTTCCCTCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
TGATTGTCTGTAACAATCCCTATTCTTTTCAGGATTTGGCACTAAAAACACAGTCTTCTCATTAG
GATAGATAAAATTGATGCTTTGGTTTTGC
Found at i:2229012 original size:475 final size:476
Alignment explanation
Indices: 2227844--2235796 Score: 10937
Period size: 475 Copynumber: 16.7 Consensus size: 476
2227834 ATGCTTTGGA
2227844 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACTAAT-CCTCATTCTTTTC
1 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACTAATCCCT-ATTCTTTTC
* * * *
2227908 TA-GATTTGGCACTATAAACATAGTCTTCTCAATAGGACAGACGAAATTGATGCTTTTGCTTTGT
65 -AGGATTTGGCACTATAAACATAGTCTTCTCAATAGGATAGACGAAATTGATGCTTTGGTTTTGC
*
2227972 AAGAAAGTCTTTCTTCCCACCAATTTTTGGTAAAGTCTAAGTCTATGCCTCAAGAGAGACAAACA
129 AAGAAAGTCTTTCTTCCCACCAATTTTT-GTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAACA
* *
2228037 AGGATTCTAGTAATAATC-TCTATTCATTTTGTGATTAAGCACTAAAAACACATTCTCCTCATTA
193 TGGATTCTAGTAATAATCTTC-ATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTA
* *
2228101 GGATAAA-AGGTATTGATGGTTTTCTTTTGCATGAAATTCTTTTCTTTGCCCTATTTTCCTTAAA
257 GGATAAATA-ATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAA
* * * * *
2228165 ATCAAAGCTCATCCCTTAAACAAGGCAAGCTTTGATTCTTGTAACAGTCCCCATTCTTTTCAAGA
321 ATCAAAGTTCATCCCTTAAATAAAGCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGA
* * * ** ** **
2228230 CTGGGAACCAAAAACATATTCCTTTCGTTAGGATACCCGACATTGACGTTTTGGTGTCAAAAGAA
386 TTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACACTTTGGTGTCGCAAGAA
*
2228295 AAGGTTTTCTTTCCTCCGTTTTTTAT
451 AAGGTTTTCTTTCCTCCGTTTTTGAT
* ** *
2228321 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGATTAGTCTTACCGATCCCTATTCTTTTCC
1 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACTAATCCCTATTCTTTTCA
* *
2228386 GGACTTGGCACTATAAACATAGTCTTCTCAATAGGATAGATGAAATTGATGCTTTGGTTTTGCAA
66 GGATTTGGCACTATAAACATAGTCTTCTCAATAGGATAGACGAAATTGATGCTTTGGTTTTGCAA
* * *
2228451 GAAAGGT-TTTCTTCCCATCAATTTTTGTAAAGTCTAAGTCTAGGCCTCAGGTGAGACAAACATG
131 GAAA-GTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAACATG
* * *
2228515 GGTTCTAGTAATAATTTTCATTCATTTTGTGATTTGGCACTAAAAACACATTCTCCTCATTAGGA
195 GATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGA
* * *
2228580 TAAATAATATTGATGGTTTTCTTTTGTATGAAATTCTTTTCTTTGCCCTATTTCCCTTAAAATCA
260 TAAATAATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
* ** * * *
2228645 AAGTTTATGTCGTAAATAAAGCAAGCATTGATTCTTGTAACGGTCTCTACTT-TTTTCAAGATTG
325 AAGTTCATCCCTTAAATAAAGCAAGCATTGATTCTTGTAACAGTCTCCA-TTCTTTTCAAGATTG
* **
2228709 GGAACCAAAAACACATTCCTTTTATTAGGATACATGACATTGACACTTTGGCATCGCAAGAAAAG
389 GGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACACTTTGGTGTCGCAAGAAAAG
* *
2228774 G-TTTCCTTCCTCCATTTTTGAT
454 GTTTTCTTTCCTCCGTTTTTGAT
* *
2228796 AGAATCAAAGTTTGTCTCTTAAATAAGACAAGCATGATTAGTCTTACCAATCCCTATTCTTTTCA
1 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACTAATCCCTATTCTTTTCA
* ***
2228861 GGATTTGGCACTATAAACATAGTCTTCTCATTAGGATAGGTAAAATTGATGCTTTGGTTTTGCAA
66 GGATTTGGCACTATAAACATAGTCTTCTCAATAGGATAGACGAAATTGATGCTTTGGTTTTGCAA
* * *
2228926 GAAAGTCTTTCTTCCCACTAATTTTTCTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAACTTGG
131 GAAAGTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAACATGG
2228991 ATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGAT
196 ATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGAT
* *
2229056 AAA-AGGTATTGATGGTTTTATTTTGCATGAAAATCTTTTCTTTGCCCTA-TTTCCTTAAAATCA
261 AAATA-ATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
* * * * * * *
2229119 AAGCTCATCCCTTAAATAATGCATGCTTTGATTCTTATAACAGTCTCCGTTCATTTCAAGATTGG
325 AAGTTCATCCCTTAAATAAAGCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGG
* * ** * ** *
2229184 GAACCATAAACACATTCCTTTTATTAGGATACCCGACATTAATGCTTTGGTGTC-AAAGGAAAAG
390 GAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACACTTTGGTGTCGCAA-GAAAAG
*
2229248 GTTTTCTTTCCTCTGTTTTTGAT
454 GTTTTCTTTCCTCCGTTTTTGAT
2229271 AGAATCAAAGTTTGTCTCTTAAATAAGACAAAC-TGATTAGTCTTACTAAT-CCTCATTCTTTTC
1 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACTAATCCCT-ATTCTTTTC
* * * * **
2229334 TGGATTTGGCACTATGAACATAGTCTTCTCAATAGGATAGACGAAATTGATGCTTTTGCTTTATA
65 AGGATTTGGCACTATAAACATAGTCTTCTCAATAGGATAGACGAAATTGATGCTTTGGTTTTGCA
2229399 AGAAAGTCTTTCTTCCCACCAATTTTTGGTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAACAT
130 AGAAAGTCTTTCTTCCCACCAATTTTT-GTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAACAT
* *
2229464 GGATTCTAGTAATAATCTTCATTCATTTTGAGATTAAGCACTAAAAACACATTCTCCTCATTAGG
194 GGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGG
*
2229529 ATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
259 ATAAATAATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * * * *
2229594 AAAGCTCATCTCTTAAATAAGGCAAGCTTTGATTCTTGTAACAGTC-CCTATTCTTTTCAAAATT
324 AAAGTTCATCCCTTAAATAAAGCAAGCATTGATTCTTGTAACAGTCTCC-ATTCTTTTCAAGATT
* * ** ** **
2229658 AGGAACCAAAAACACATTCCTTTCGA-TAGGACACCCGACATTGATGCTTTGGTGTCAAAAGAAA
388 GGGAACCAAAAACACATTCCTTTC-ATTAGGATACATGACATTGACACTTTGGTGTCGCAAGAAA
*
2229722 AGGTTTTCTTTCCTCCATTTTTGAT
452 AGGTTTTCTTTCCTCCGTTTTTGAT
* * * *
2229747 AGAATCAAAGTTTGTCTCTTAAAT-AGACAAATACGATAAGTCTTACTAATCCCCATTCTTTTCA
1 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACTAATCCCTATTCTTTTCA
* * * * ** *
2229811 GGATTTGGCACTAAAAACATTGTCTTCTCAGTAGGATTGATTAAATTGATGCTTTGTTTTTGCAA
66 GGATTTGGCACTATAAACATAGTCTTCTCAATAGGATAGACGAAATTGATGCTTTGGTTTTGCAA
* * ** * *
2229876 GAAAGGCTTTCTTCCCACCAATCTACGTAAAGTCTAAGCCCATGCCTCAAGTGAGACAAACATGG
131 GAAAGTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAACATGG
* *
2229941 ATTCTAGTAATTATCTTCACTCATTTTGTGATTAGGCA-TATAAAACACATTCTCCTCATTAGGA
196 ATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTA-AAAACACATTCTCCTCATTAGGA
* * * *
2230005 TAAATATTGTTGATGGTTTT-TTTTGCATGAAAATCTTGTGTTTGCCCTATTTTCCTTAAAATCA
260 TAAATAATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
** * *
2230069 AAGTTCATCCAGTAAATAAAGCAAGCATTGATTCTTGTAATAGTCTCCA-T-TTTTCAAGATTTG
325 AAGTTCATCCCTTAAATAAAGCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGG
* * * * ** *
2230132 GAACCAAAAACACATTCCTTTCATTTGGATACCTGACTTTGACGCTTTGGTGTCATAGGAAAAGG
390 GAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACACTTTGGTGTCGCAAGAAAAGG
*
2230197 TTTTCTTTCCTCCGTTTTTTAT
455 TTTTCTTTCCTCCGTTTTTGAT
* * * *
2230219 AGAATCAAAGTTTATCTCTTAAATAAGACAAATATGATTAGTCTTACTAATACCTAGTCTTTTCA
1 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACTAATCCCTATTCTTTTCA
*
2230284 GGATTTGGCACTATAAACATAGTCTTCTCAATAGGATAGACGAAATTGATGCTTTGGCTTTGCAA
66 GGATTTGGCACTATAAACATAGTCTTCTCAATAGGATAGACGAAATTGATGCTTTGGTTTTGCAA
2230349 GAAAGGT-TTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAACATG
131 GAAA-GTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAACATG
* *
2230413 GATTCTAGTAATAATCTTCATTCATTTTGTGATTTGGCACTTAAAACACATTCTCCTCATTAGGA
195 GATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGA
* * *
2230478 TAAATATTATTGATGGTTTTCTTTTGCATGAAAATCTTTTTTTTGCCTTATTTTCCTTAAAATCA
260 TAAATAATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
* * ** * * *
2230543 AAGTTCATCTCGTAAATAAAGCAAGCATTGATTCTTGTAGTAGTCTGCATTTTTTTTAAGATTGG
325 AAGTTCATCCCTTAAATAAAGCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGG
* * *
2230608 GAACCAAAAACACATTCCCTTCTTTAGGATACATGACATTGACACTTTGGTGTCGGAAGAAAAGG
390 GAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACACTTTGGTGTCGCAAGAAAAGG
* * *
2230673 TTTCCTTCCCACCGTTTTTGAT
455 TTTTCTTTCCTCCGTTTTTGAT
* * * *
2230695 AGAATCGAAGTTT-TCGT-TTAAATAAGACAAATATGAATAGTCTTGCTAATCCCTAATTCTTTT
1 AGAATCAAAGTTTGTC-TCTTAAATAAGACAAACATGATTAGTCTTACTAATCCCT-ATTCTTTT
* * *
2230758 CAAGATTTGGCACTATAGACATAGTCTTCTCAATAGGATAAACGAAATTGATGCTTTGGTTTTGC
64 CAGGATTTGGCACTATAAACATAGTCTTCTCAATAGGATAGACGAAATTGATGCTTTGGTTTTGC
* *
2230823 AAGAAAGGT-TTTCTTCCCATCAATTTTTGTAAAGTCTAAGTCTAGGCCTCAAGTGAGACAAACA
129 AAGAAA-GTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAACA
* * **
2230887 TGGATTCTAGTAATAATCTTCATTCATTTTGTGATTCGGCTCTAAAAACACATTCTCCTTTTTAG
193 TGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAG
* *
2230952 GATAAATAATATTGATGGTTTTCTTTTGTATGAAAATCTTTTCCTTGCCCTATTTTCCTTAAAAT
258 GATAAATAATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
* * *
2231017 CAAAGTTCATCCCGTAAATAAAGCAAGCATTGATTCTTGAAACAGTCTCCATTTTTTTCAAGATT
323 CAAAGTTCATCCCTTAAATAAAGCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATT
* *
2231082 GGGAACCAAAAACACATTCCCTTT-AGTAGGATACATGAGATTGACACTTTGGTGTCGCAAGAAA
388 GGGAACCAAAAACACATT-CCTTTCATTAGGATACATGACATTGACACTTTGGTGTCGCAAGAAA
* * * * *
2231146 AGGATTCCTTCCCACTGTTTTTGAT
452 AGGTTTTCTTTCCTCCGTTTTTGAT
* * * * *
2231171 AGTATCAAAGTTT-TCTTTTAAATAAGACAAACTTGAATAGTCTTGCTAATCCCTAATTCTTTTC
1 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACTAATCCCT-ATTCTTTTC
** * *
2231235 AGGATTTGGCACTATAAACATAGTCTTCTCTTTAGGATAGACGAAATTAATGCTTTGGTTTCGCA
65 AGGATTTGGCACTATAAACATAGTCTTCTCAATAGGATAGACGAAATTGATGCTTTGGTTTTGCA
* * * *
2231300 AGAAAGTCTTACTTCCCGCCAATTTTTCTAAAGTCTAAGTCTACGCCTCAAGTGAGACAAACATG
130 AGAAAGTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAACATG
2231365 GATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGA
195 GATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGA
* * * * *
2231430 TAAATGATATTGGTGGTTTTCTTTTGCATG-AAATTTTTTCCGTTGTCCTATTTTCCTTAAAATC
260 TAAATAATATTGATGGTTTTCTTTTGCATGAAAATCTTTT-CTTTGCCCTATTTTCCTTAAAATC
* *
2231494 AAAGTTCATCCCTGAAA-AAAGGCAAGCATTGATTCTTGCAACAGTCTCCATTCTTTTCAAGATT
324 AAAGTTCATCCCTTAAATAAA-GCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATT
* * * * ** **
2231558 AGGAACTAAAAACACATTCCCTTCGTTAGGATACCCGACATTGACACTTTGGTGTCAAAAGAAAA
388 GGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACACTTTGGTGTCGCAAGAAAA
2231623 GGTTTTCTTTCCTCCGTTTTTGAT
453 GGTTTTCTTTCCTCCGTTTTTGAT
**
2231647 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACCGATCCCTATTCTTTTCA
1 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACTAATCCCTATTCTTTTCA
*
2231712 GGATTTGGCACTATAAACATAGTCTTCTCAATAGGATAGATGAAATTGATGCTTTGGTTTTGCAA
66 GGATTTGGCACTATAAACATAGTCTTCTCAATAGGATAGACGAAATTGATGCTTTGGTTTTGCAA
* * *
2231777 GAAAGGT-TTTCTTCCCATCAATTTTTGTAAAGTCTAAGTCTAGGCCTCAGGTGAGACAAACATG
131 GAAA-GTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAACATG
* * * *
2231841 GATTCTAGTAACAATCTTCACTCATTTTGTGATTAGGCACAAAAAACACATTCTTCTCATTAGGA
195 GATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGA
* * * *
2231906 TAAA-AGGTATTGATGGTTTTCTTTCGCATGAAATTCTTTTCTTTG-CCTATTTTCCTTAAAATG
260 TAAATA-ATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * * * *
2231969 AAAGCTCATCCCTTAAATAAGGCAAGCTTTGATTCTTGTAACTGTC-CCTGTTCTTTTCAAGATT
324 AAAGTTCATCCCTTAAATAAAGCAAGCATTGATTCTTGTAACAGTCTCC-ATTCTTTTCAAGATT
* *
2232033 GGGAACCAAAAACACATTCCTTTTATTAGGATACATGACATTGACACTTTGGTGTCGCAAGGAAA
388 GGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACACTTTGGTGTCGCAAGAAAA
* *
2232098 GG-TTTCATTCCCACCGTTTTTGAT
453 GGTTTTC-TTTCCTCCGTTTTTGAT
* * *
2232122 AGAATCAAAGTTT-TCTTTTAAATAAGACAAACATGAATAGTCTTACTAATCCCTAATTCTTTTT
1 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACTAATCCCT-ATTCTTTTC
* * *
2232186 AGGATTTGGCACTATAAACATAGTCCTCTCATTAGGATAGACGAAATTGATGCTTTGGTTTCGCA
65 AGGATTTGGCACTATAAACATAGTCTTCTCAATAGGATAGACGAAATTGATGCTTTGGTTTTGCA
* * * * *
2232251 AGAAAGTCTTTCTTCCCACCAACTTTTCTAAAGTCTAAATCTATGCCTCAAGTAAGATAAACATG
130 AGAAAGTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAACATG
* * * *
2232316 GATTCTAGTATTAATATTCATTTATTTTGTGATTAGGCACTAAAAACACGTTCTCCTCATTAGGA
195 GATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGA
* * *
2232381 TAAATGATATTTATGGTTTTCTTTTGCATGAAAATTTTTTCTTTGCCCTATTTTCCTTAAAATCA
260 TAAATAATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
* * *
2232446 AAGTTCATCCCTTAAA-AAAGGCAAGCATTGATTCTTGCAACTGTCTCCATTCTTTTCAGGATTG
325 AAGTTCATCCCTTAAATAAA-GCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTG
* * * *** * * *
2232510 GGAACTAAAAACACATTCCTTTCGTTAGGATACAAGACATTGATGGTTTGATGTAGCTA-AAAAG
389 GGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACACTTTGGTGTCGCAAGAAAAG
* *
2232574 TTTTTCTTTCCACCGTTTTTGAT
454 GTTTTCTTTCCTCCGTTTTTGAT
* * * * * * * * *
2232597 AGAAACAAAGTATGTATCTTAAGTAAGACAAATATGATAAGTCTAACTAGTCCCCATTCTTTTCA
1 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACTAATCCCTATTCTTTTCA
* * * * *
2232662 GGATTCGGCACTATAAACATAGTCTTCTCATTAGGATTGACTAAATTGATGCTTTGTTTTTGCAA
66 GGATTTGGCACTATAAACATAGTCTTCTCAATAGGATAGACGAAATTGATGCTTTGGTTTTGCAA
* * * * *
2232727 GAAAGGCTTTCTTCCCACCAATCTTTGTAAAGTCTAAGCCCATGCCTTAAGTGAGACAAACATGG
131 GAAAGTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAACATGG
* * *
2232792 ATTCTAGTAATAATCTTCACTCATTTTGTGATTAGGCACTAAAAA-GCTTTCTCCTCATTAGGAT
196 ATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGAT
*
2232856 AAA-AGGTATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
261 AAATA-ATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
* * * * *
2232920 AAGCTT-ATCTCTTAAATAAGGCAAGCTTTGATTCTTGTAACAGTC-CTCGTTCGTTTCAAGATT
325 AAG-TTCATCCCTTAAATAAAGCAAGCATTGATTCTTGTAACAGTCTC-CATTCTTTTCAAGATT
** * **
2232983 GGGAACCAAAAACACATTCCTTTCATTAGGATACCCGACATTGACGCTTTGGTGTCAAAAGAAAA
388 GGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACACTTTGGTGTCGCAAGAAAA
2233048 GGTTTTCTTTCCTCCGTTTTTGAT
453 GGTTTTCTTTCCTCCGTTTTTGAT
* * * * *
2233072 AGAATCAAAGTCTGTCTCTTAAATAAGACACACATGATTAGTCTTACCAATCCCCACTCTTTTCA
1 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACTAATCCCTATTCTTTTCA
* * * *
2233137 AGATTTGGCACTATAGACATAGTCTTCTAAATAGGAT-GACGAAATTAATGCTTTGGTTTTGCAA
66 GGATTTGGCACTATAAACATAGTCTTCTCAATAGGATAGACGAAATTGATGCTTTGGTTTTGCAA
* * * * *
2233201 GAAAGTTTTTCTTCCCATCAATTTTTGTAAAGTCTAAGTCTAGGACTCAAGTAAGACAAACATGG
131 GAAAGTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAACATGG
* * * * **
2233266 ATTCTAGTAATAATCTTTATTCATTTTGTGATTCGGCTCTAAAAACACATTCTCTTTTTTAGGAT
196 ATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGAT
*
2233331 AAATAATATTGATGGTTTTCTTTTGTATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
261 AAATAATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
* *
2233396 AGTTCAT-CCTGTAAATAAAGCAAGCATTGATTCTTGAAACAGTCTCCATTTTTTTCAAGATTGG
326 AGTTCATCCCT-TAAATAAAGCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGG
*
2233460 GAACCAAAAACACATTCCCTTT-ATTAGGATACATGAGATTGACACTTTGGTGTCGCAAGAAAAG
390 GAACCAAAAACACATT-CCTTTCATTAGGATACATGACATTGACACTTTGGTGTCGCAAGAAAAG
* * * * *
2233524 GATTCCTTCCCACTGTTTTTGAT
454 GTTTTCTTTCCTCCGTTTTTGAT
* * * *
2233547 AGAATCAAAGTTT-TCTTTTAAATAAGACAAACATTAATAGTCTTGCTAATCCCTAATTCTTTTC
1 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACTAATCCCT-ATTCTTTTC
** * *
2233611 AGGATTTGGCACTATAAACATAGTCTTCTCTTTAGGATAGACGAAATTAATGCTTTGGTTTCGCA
65 AGGATTTGGCACTATAAACATAGTCTTCTCAATAGGATAGACGAAATTGATGCTTTGGTTTTGCA
* * * *
2233676 AGAAAGTCTTACTTCCCGCCAATTTTTCTAAAGTCTAAGTCTACGCCTCAAGTGAGACAAACATG
130 AGAAAGTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAACATG
2233741 GATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGA
195 GATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGA
* * * * *
2233806 TAAATGATATTGGTGGTTTTCTTTTGCATG-AAATTTTTTCCGTTGTCCTATTTTCCTTAAAATC
260 TAAATAATATTGATGGTTTTCTTTTGCATGAAAATCTTTT-CTTTGCCCTATTTTCCTTAAAATC
* *
2233870 AAAGTTCATCCCTGAAA-AAAGGCAAGCATTGATTCTTGCAACAGTCTCCATTCTTTTCAAGATT
324 AAAGTTCATCCCTTAAATAAA-GCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATT
* * * ** **
2233934 AGGAACTAAAAACACATTCCCTTCATTAGGATACCCGACATTGACACTTTGGTGTCAAAAGAAAA
388 GGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACACTTTGGTGTCGCAAGAAAA
2233999 GGTTTTCTTTCCTCCGTTTTTGAT
453 GGTTTTCTTTCCTCCGTTTTTGAT
* **
2234023 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTATTCTTACCGATCCCTATTCTTTTCA
1 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACTAATCCCTATTCTTTTCA
* *
2234088 GGATTTGTCACTATAAACATAGTCTTCTCAATAGGATAGACGAAATTGATGTTTTGGTTTTGCAA
66 GGATTTGGCACTATAAACATAGTCTTCTCAATAGGATAGACGAAATTGATGCTTTGGTTTTGCAA
* * *
2234153 GAAAGGT-TTTCTTCCCATCAATTTTTGTAATGTCTAAGTCTA-GACCTC-AGGGAGACAAACAT
131 GAAA-GTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATG-CCTCAAGTGAGACAAACAT
* * * *
2234215 GGATTCTAGTAACAATCTTCACTCATTTTGTGATTAGGCACAAAAAACACATTCTTCTCATTAGG
194 GGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGG
* * *
2234280 ATAAA-AGGTATTTATGGTTTTCTTTTGCATGAAATTCTTTTCTTTGCCCTATTTTCCTTAAAAT
259 ATAAATA-ATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
* * * * * *
2234344 GAAAGCTCATCCCTTAAATAAGGCAAGCTTTGATTCTTCTAACAGTCCCCATTCTTTTCAAGATT
323 CAAAGTTCATCCCTTAAATAAAGCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATT
* * * * * *
2234409 GGGAACCAAAAACACATTCCTTTGATTTGGATACCTGACATTGACGCTTTGGTGTCGTAGGAAAA
388 GGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACACTTTGGTGTCGCAAGAAAA
* *
2234474 GGTTTTCTTTCTTCCGTTTTTTAT
453 GGTTTTCTTTCCTCCGTTTTTGAT
* * * *
2234498 AAAATCAAAGTTTATCTCTTAAATAAGACAAACATGATTAGTCTTACTAATCCCCAATCTTTTCA
1 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACTAATCCCTATTCTTTTCA
*
2234563 GGATTTGGCACTATAAACATAGTCTTCTCAATAGGATAGACGAAATTGATGCTTTGGTTTTGCAG
66 GGATTTGGCACTATAAACATAGTCTTCTCAATAGGATAGACGAAATTGATGCTTTGGTTTTGCAA
*
2234628 GAAAGGT-TTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGAGAGACAAACATG
131 GAAA-GTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAACATG
* * *
2234692 GGTTCTAGTAATAATCTTCATTCATTTTGTGATTCGGCACTAAAAGCACATTCTCCTCATTAGGA
195 GATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGA
* *
2234757 TAAATATTATTGATGGTTTTCTTTTGCATGAAAATCTTTCCTTTGCCCTATTTT-CTATAAAATC
260 TAAATAATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCT-TAAAATC
* * ** *
2234821 AAAGTTCATCCCATAGATAAAGCAAGCATTGATTCTTGTAATTGTCTCCATTTTTTTCAAGATTG
324 AAAGTTCATCCCTTAAATAAAGCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTG
* * *
2234886 GGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGACATTTTGGTGTTGCAAGAAAAG
389 GGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACACTTTGGTGTCGCAAGAAAAG
* * *
2234951 GTTTCCTTCCCACCGTTTTTGAT
454 GTTTTCTTTCCTCCGTTTTTGAT
* * * * *
2234974 AAAATCAAAGTTT-TCTTTTAAATAAGACAAACATGAATAGTCTTGCTAATCCTTAATT-TTTTC
1 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACTAATCCCT-ATTCTTTTC
* * * * **
2235037 TGGATTTGGCACTATAAACATGGTCTTCTCATTAGGATAGACAAAATTGATGCTTTGGTTTCACA
65 AGGATTTGGCACTATAAACATAGTCTTCTCAATAGGATAGACGAAATTGATGCTTTGGTTTTGCA
** * *
2235102 AGAAAGTCTTTCTTCCCACCAACGTTTCTAAAGTCTAAGTCTATGCCTCAAGTGAGATAAACATG
130 AGAAAGTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAACATG
*
2235167 GATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACGTTCTCCTCATTAGGA
195 GATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGA
* * * * *
2235232 TAAATGATATTTATGGTTTTCTTTTGCATGAAATTTTTTTCTTTACCCTATTTTCCTTAAAATCA
260 TAAATAATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
* * * *
2235297 AAGTTCATCCCTTAAA-AAAGGCAAGCATTGATTCTTGCAACAGTCTCTATTCTTTTCAGGATTA
325 AAGTTCATCCCTTAAATAAA-GCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTG
* * *** *
2235361 GGAACTAAAAACACATTCCTTTCATTAGGATACAAGACATTGATGGTTTGGTGTAGCAA-AAAAG
389 GGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACACTTTGGTGTCGCAAGAAAAG
* *
2235425 TTTTTCTTTCCACCGTTTTTGAT
454 GTTTTCTTTCCTCCGTTTTTGAT
* * * * *
2235448 AGAATCAAAGTATGTCTCTTAAGTAAGACAAATATGATAAGTCTCACTAATCGCC-ATTCTTTTC
1 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACTAATC-CCTATTCTTTTC
* * * * * *
2235512 AAGATTCGGCACTATAAACATAGTCTTCTCATTAGGATTGACTAAATTGATGCTTTGTTTTTGCA
65 AGGATTTGGCACTATAAACATAGTCTTCTCAATAGGATAGACGAAATTGATGCTTTGGTTTTGCA
* * * * *
2235577 AGAAAGGCTTTCTTCCCACCAATCTTTGTAAAGTCTAAGCCCATGCCTTAAGTGAGACAAACATG
130 AGAAAGTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAACATG
* * *
2235642 GATTCTAGTAATAATCTTCACTCATTTTGTGATTAGGCACTAAAAA-GCTTTCTCCTCATTAGGA
195 GATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGA
*
2235706 TAAA-AGGTATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
260 TAAATA-ATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * * *
2235770 AAAGCTCATCTCTCAAATAAGGCAAGC
324 AAAGTTCATCCCTTAAATAAAGCAAGC
2235797 TTATCTCTTC
Statistics
Matches: 6627, Mismatches: 761, Indels: 179
0.88 0.10 0.02
Matches are distributed among these distances:
471 1 0.00
472 110 0.02
473 235 0.04
474 907 0.14
475 2609 0.39
476 2522 0.38
477 238 0.04
478 5 0.00
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (476 bp):
AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGATTAGTCTTACTAATCCCTATTCTTTTCA
GGATTTGGCACTATAAACATAGTCTTCTCAATAGGATAGACGAAATTGATGCTTTGGTTTTGCAA
GAAAGTCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCTATGCCTCAAGTGAGACAAACATGG
ATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTCATTAGGAT
AAATAATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
AGTTCATCCCTTAAATAAAGCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGG
AACCAAAAACACATTCCTTTCATTAGGATACATGACATTGACACTTTGGTGTCGCAAGAAAAGGT
TTTCTTTCCTCCGTTTTTGAT
Found at i:2236346 original size:158 final size:157
Alignment explanation
Indices: 2236184--2236660 Score: 395
Period size: 158 Copynumber: 3.0 Consensus size: 157
2236174 ATACTCATAC
* * * *
2236184 TAATCCCCACTATT-TTTAGGATTTGGCACCATAAACATAGTCTTCTCATTAAGATTGATGAAAT
1 TAATCCTCACTATTATTTAGGATTTGGCACCAAAAACATAGTCTTCTCATTAGGATAGATGAAAT
2236248 TGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCGACCAATTTTTGTAAAGTCTAAGTTCGTACC
66 TGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCGACCAATTTTTGTAAAGTCTAAGTTCGT-CC
2236313 TCAAGTGAGACAAACATGGATTCTGGTAA
130 TCAAGTGAGACAAACATGGATTCT-GTAA
* * * * ** * * **
2236342 TAATCTTCA-T-TTATTTTGTGATTAGGCACTAAAAACGCATTCTTCTCATTAGGATAAATGATG
1 TAATCCTCACTATTATTTAG-GATTTGGCACCAAAAACATAGTCTTCTCATTAGGATAGATGAAA
* * * ** * * * **
2236405 TTGATGGTTT-TTTTTGCATGAAAATCTTTCCTT-TG-CCTTATTTTCCT-TAAAATAAAAGTTC
65 TTGATGCTTTGGTTTTGCAAGAAAGGCTTT-CTTCCGACC-AATTTT--TGTAAAGTCTAAGTTC
* * * * * *
2236466 ATCCCCTAAAT-ATGGCAAGA-ATTGACTCT-T-A
126 GTCCTC-AAGTGA-GACAA-ACATGGATTCTGTAA
* * * * *
2236497 TAA-CAGTCTCTATTCTTTCAGGA-TTGGCACCACAAACATAGTCTTCTCATTAGGATAGATCAA
1 TAATC-CTCACTATTATTT-AGGATTTGGCACCAAAAACATAGTCTTCTCATTAGGATAGATGAA
* **
2236560 AATGATGCTTTGGTTTTATAAGAAAGGCTTTCTTCCGACCAATTTTTGTAAAGTCTAAGTTCGTG
64 ATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCGACCAATTTTTGTAAAGTCTAAGTTCGT-
2236625 CCTCAAGTGAGACAAACATGGATTCTAGTAA
128 CCTCAAGTGAGACAAACATGGATTCT-GTAA
2236656 TAATC
1 TAATC
2236661 TTCATTCATT
Statistics
Matches: 232, Mismatches: 63, Indels: 46
0.68 0.18 0.13
Matches are distributed among these distances:
154 1 0.00
155 8 0.03
156 74 0.32
157 60 0.26
158 82 0.35
159 6 0.03
160 1 0.00
ACGTcount: A:0.30, C:0.17, G:0.16, T:0.36
Consensus pattern (157 bp):
TAATCCTCACTATTATTTAGGATTTGGCACCAAAAACATAGTCTTCTCATTAGGATAGATGAAAT
TGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCGACCAATTTTTGTAAAGTCTAAGTTCGTCCT
CAAGTGAGACAAACATGGATTCTGTAA
Found at i:2237422 original size:475 final size:470
Alignment explanation
Indices: 2236523--2242662 Score: 5662
Period size: 475 Copynumber: 13.0 Consensus size: 470
2236513 TTCAGGATTG
* * * *** *
2236523 GCACCACAAACATAGTCTTCTCATTAGGATAGATCAAAATGATGCTTTGGTTTTATAAGAAAGGC
1 GCACCATAAACATAGTCTTCTCATTAGGATAGATGAAATTGATGCTTTGGTTTCGCAAGAAAGCC
* * * *
2236588 TTTCTTCCGACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAGTGAGACAAACATGGATTCTAG
66 TTTCTTCCCACCAATTTTGGCAAAGTCTAAGTTCGTGCCTCAACTGAGACAAACATGGATTCTAG
* * * *
2236653 TAATAATCTTCATTCATTTTGTAATTAGGCACTAAAAACACATTCTCCTCACTAGTG-TAAATGA
131 TAATAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTACTCAATAG-GATAAATGA
* * *
2236717 TATTGATGTATTTCTTTTGCATGAAAATCTTTGCTTTGCCCTATTTTCCTTAAAATCGAAGTT-A
195 TATTGATGT-TTTCTTTTGTATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCA
* *
2236781 TCCCTTAAATAAAGCAAGCATTGATTCTCATAACTA-TCTCCATTCTTTTCAACATTGGGAACCA
259 TCCCTTAAATAAAGCAAGCATTGATTCTCATAAC-AGTCTCCATTCTTTTCAAGATTGGGAACAA
** *
2236845 TGAACACATTCATTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCT
323 T-AACACATTCCCTTCATTAGGATATATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCT
*
2236910 TGCACCTGATTTTAATAGAATCAAAGTTTATCTCTTAACTAAGACAAACATGAATACTCATACTA
387 TGCACC-G-TTTTTATAGAAT-AAAGTTTATCTCTTAACTAAGACAAACATGAATACTCATACTA
*
2236975 ATCGCCATTCTTTTTAGGATT-T
449 ATC-CCATTCTTTTTAGGATTAC
*
2236997 GACACCGTAAACATAGTCTTCTCATTAGGATAGATGAAATTGATGCTTTGGTTTCGCAAGAAAGC
1 G-CACCATAAACATAGTCTTCTCATTAGGATAGATGAAATTGATGCTTTGGTTTCGCAAGAAAGC
* * * * *
2237062 C-TTCTTTCCCACCAATTTTGGAAAAGTCTAAGTTCGGGCCTTAA-TAGAGATAAACACGGATTC
65 CTTTC-TTCCCACCAATTTTGGCAAAGTCTAAGTTCGTGCCTCAACT-GAGACAAACATGGATTC
* * * *
2237125 TAGTAATAATCTTCGTTTATTTTCTGATTAGGCACTATAAACACATTCTACTCATTAGGATAAAT
128 TAGTAATAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTACTCAATAGGATAAAT
* *
2237190 GATATTGATAGTTTTCTTTTGTATGAATATCTTTTCTTCGCCCTATTTTCCTTAAAATCAAAGTT
193 GATATTGAT-GTTTTCTTTTGTATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTT
* * * * *
2237255 CATCCCTTAAATAAGGCAAGCATTGAATATCGTAACAGTCTCCATTCTTTTCAAGATTGGGAATT
257 CATCCCTTAAATAAAGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAA-C
* * * * *
2237320 AATAACACATTCCCTTCGTTAGGATATATGACATTGATGCTTTGGGGCCGTAAGAAATGCTTTTC
321 AATAACACATTCCCTTCATTAGGATATATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTC
* * ** *
2237385 TTGCAGCCGTTTTTGATAGGATTAAGTTTGCCTCTTAACTAAGACAAACATAAATACTCATACTA
386 TTGCA-CCGTTTTT-ATAGAATAAAGTTTATCTCTTAACTAAGACAAACATGAATACTCATACTA
*
2237450 ATCCTCATTCTTTTAAGGATTAC
449 ATCC-CATTCTTTTTAGGATTAC
* * * * *
2237473 GCACCAAAAACATAGTCTTCTTATTAGGATAGACGAAATTGATGCTTTGGTTTTGCAAGAAAGTC
1 GCACCATAAACATAGTCTTCTCATTAGGATAGATGAAATTGATGCTTTGGTTTCGCAAGAAAGCC
*
2237538 TTTCTTCCCACCAATTTTGGCAAAGTTTAAGTTCGTGCCTCAACTGAGACAAACATGGATTCTAG
66 TTTCTTCCCACCAATTTTGGCAAAGTCTAAGTTCGTGCCTCAACTGAGACAAACATGGATTCTAG
* ** * * *
2237603 TAATAATCTTCATTCATTTTGTGATTATGTGCTGTAAACACATTTTTCTCAATAGGATAAATGAT
131 TAATAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTACTCAATAGGATAAATGAT
*
2237668 ATTGATGGTTTTCTTTTGCT-TGAAAATCTTTTGTTTGCCCTATTTTCCTTAAAATCAAAGTTCA
196 ATTGAT-GTTTTCTTTTG-TATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCA
* * *
2237732 TCCTTTAAATAATGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTTAAGATTGGGAACCAA
259 TCCCTTAAATAAAGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAA-CAA
* * * *
2237797 AAACACATT-CCTCTCATTTGGATATATGACATTGATGCTTTGGTGTCACAAGAAAAGTTTTTCT
323 TAACACATTCCCT-TCATTAGGATATATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCT
* * * * * * *
2237861 TGCAACAGTTTTTATAGAATCAGAGTTTTTCTCTTAAATAAGATAAACACGAATGCTCATACTAA
387 TGC-ACCGTTTTTATAGAAT-AAAGTTTATCTCTTAACTAAGACAAACATGAATACTCATACTAA
*
2237926 TCCCTATTC-TTTTACAGATTAC
450 TCCC-ATTCTTTTTA-GGATTAC
* *
2237948 GCACCATAAACATAGTCTTCTCATAAGGATAGATGAAATTGATGCTTTGGTTTCGCAAGAAAGGC
1 GCACCATAAACATAGTCTTCTCATTAGGATAGATGAAATTGATGCTTTGGTTTCGCAAGAAAGCC
* * *
2238013 ATTCTTCCCACCAATTTTTGCAAAGTCTAAGTTCGTGCCTCAACTGAGACAAAAATGGATTCTAG
66 TTTCTTCCCACCAATTTTGGCAAAGTCTAAGTTCGTGCCTCAACTGAGACAAACATGGATTCTAG
* ** **
2238078 TAATAATCTTCACTCA-TTT-T-A-T--G-A-TATTGA-TGATT-T--TC--T----T---T--T
131 TAATAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTACTCAATAGGATAAATGAT
** * * * * * *** * *
2238120 ACTTGA-G-AATCTTTTGTTTG----CCCTAT-TTT-CCTTAAAATCA---------AAGTTTAT
196 A-TTGATGTTTTCTTTTGTATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
* ** * *
2238168 CCCTTAAATAAGGCAAGCATTGATTCTTGTAATAGTCTCCATTCTTTTCAGGATTGGGAATCAAT
260 CCCTTAAATAAAGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAA-CAAT
** * * * * *
2238233 AATGCATTCCCTTCGTTAGAATATACGACGTTGATGCTTTGGGGTCGCAAGAAAAGCTTTTCTTG
324 AACACATTCCCTTCATTAGGATATATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTG
* * ** * *
2238298 CAACCATTTTTTCTAGAATCAAAGTTTGCCTCTTAACTAAGACAAACATGAATACCCATGCTAAT
389 C-ACC-GTTTTTATAGAAT-AAAGTTTATCTCTTAACTAAGACAAACATGAATACTCATACTAAT
*
2238363 CCCCATTCTTTTAAGGATTAC
451 -CCCATTCTTTTTAGGATTAC
* * * *
2238384 ACACCATAAACATAGTCTTCTCATTAGGACAGACGAAATTGACGCTTTGGTTTCGCAAGAAAAG-
1 GCACCATAAACATAGTCTTCTCATTAGGATAGATGAAATTGATGCTTTGGTTTCGCAAG-AAAGC
* * * * * * *
2238448 TTTTCTTCCCACAAATTTTTGCAAGGTCTAAGTTCGTGCCTTAATTAAGACAAACATGGATTCTA
65 CTTTCTTCCCACCAATTTTGGCAAAGTCTAAGTTCGTGCCTCAACTGAGACAAACATGGATTCTA
* ** * * *
2238513 GTAATAATCTTCATTCATTTTGTGATTATGCGTTATAAATACATTCTCCTCAATAGGATAAATCA
130 GTAATAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTACTCAATAGGATAAATGA
* *
2238578 TATTGATGGTTTTCTTTTGCT-TGAAAACCTTTTGTTTGCCCTATTTTTCC-TAAAATCAAAGTT
195 TATTGAT-GTTTTCTTTTG-TATGAAAATCTTTTCTTTGCCCTA-TTTTCCTTAAAATCAAAGTT
* * * * * * * *
2238641 CATCGCTTAAATAAGGCAAGCATTGATTTTCGTAATAGTCTCCATTCTTTTTAGGATTGGGAATT
257 CATCCCTTAAATAAAGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAA-C
* * * * *
2238706 AATAACACATTCCCTTCAGTAGGATATACGACATCGATGCTTTGGGGTCGCAAGAAAAGCTTTTT
321 AATAACACATTCCCTTCATTAGGATATATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTC
* * *
2238771 TTGCAACCATTTTTTATAGAATTAAAGTTTGTCTCCTAACTAAGACAAACATGAATACTCATACT
386 TTGC-ACC-GTTTTTATAGAA-TAAAGTTTATCTCTTAACTAAGACAAACATGAATACTCATACT
*
2238836 AATCCCCATTCTTTTAAGGATTAC
448 AAT-CCCATTCTTTTTAGGATTAC
* * * * * *
2238860 GCACCATAAACATAGTCTTCACATTAAGATTGGTGAAATTGACGCTTTGGTTTCGCAAGAAAGAC
1 GCACCATAAACATAGTCTTCTCATTAGGATAGATGAAATTGATGCTTTGGTTTCGCAAGAAAGCC
* * * * * * * *
2238925 TTTCTTGTCC-CTAATTTTTGAAAAGTCTAAGTTCATGCCTCAAATGAGACCAAA-ATTGATTAT
66 TTTCTT-CCCACCAATTTTGGCAAAGTCTAAGTTCGTGCCTCAACTGAGA-CAAACATGGATTCT
** * * *
2238988 AGTAATAATCTTTTTTTATTTTGTGGTTAGGCACTATAAACACATTCT-CATCATTAGGATAAAT
129 AGTAATAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTAC-TCAATAGGATAAAT
* * * * * *
2239052 GGTAGTAATGGTTTTCTTTTGCT-TGAAAATCATTTGTTCGCCCTATTTTCCTTAAAATCAAAGT
193 GATATTGAT-GTTTTCTTTTG-TATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGT
* * * * * ** *
2239116 TCTTTCCTTAAATAAGGGAAGCATTGATTGTTGTAACAATCTCCATTCTTTTCAAGATTGGGAAC
256 TCATCCCTTAAATAAAGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAC
* * * * * * * * *
2239181 CAGAACCACATTTCCTTCGTTATGATACATGACATTAATGCTTTGGTGACGCAAGAAAAGGTTTT
321 AATAA-CACATTCCCTTCATTAGGATATATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTT
* * * * *
2239246 CTTTCCACCTTTCGTTATGATAATGATAGAATCAACGTTTTTCTCTTAAATAAGACAAAAATGAA
385 C-TTGCA-C---CGTT-T--T--T-ATAGAAT-AAAGTTTATCTCTTAACTAAGACAAACATGAA
* * * * * * * **
2239311 TAGTCTTAGTAACCCCTGTTTTTTTTCAAGATTTG
438 TACTCATACTAATCCC-ATTCTTTTT-AGGATTAC
* ** * *
2239346 GCACCATAAACATAATCTTCTCATTAGGATAGACAAAATTGATGCTTTGGTTTTGCAAGAAAGGC
1 GCACCATAAACATAGTCTTCTCATTAGGATAGATGAAATTGATGCTTTGGTTTCGCAAGAAAGCC
* * * * * * * *
2239411 TTTCTTCTCC-CTAATTTTTGTAAGGTCTAAGTTTGTGCCTCGATTGAGACAAACATGGATTCCA
66 TTTCTTC-CCACCAATTTTGGCAAAGTCTAAGTTCGTGCCTCAACTGAGACAAACATGGATTCTA
* * ** * *
2239475 ATAATAATCTTCA-T--TTCTGTGATTATACATTATAAACACATTCTCCTCAATAGGATAAATGA
130 GTAATAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTACTCAATAGGATAAATGA
* * *
2239537 TATTGATGGTTTTCTTTTGCT-TGAAAATCATTTGTTTGCCTTATTTTCCTTAAAATCAAAGTTC
195 TATTGAT-GTTTTCTTTTG-TATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTC
* * * * * * *
2239601 ATCCCCTAAATAAGGCAAGCATTTATTCTCGTAACAGTCTCCATTCTTTTTAAGGTTAGGAATCA
258 ATCCCTTAAATAAAGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAA-CA
* * * * * *
2239666 AAAACACATTCCCATCATTAGAATACAGGACATTGATGCTTTAGG-GTCGCAAGAAAAACTTTTC
322 ATAACACATTCCCTTCATTAGGATATATGACATTGATGCTTT-GGTGTCGCAAGAAAAGCTTTTC
* *
2239730 TTGCAACCGTTTTTTATAGAATCAAAGTTTGTCTCCTAACTAAGACAAACATGAATACTCATACT
386 TTGC-ACCG-TTTTTATAGAAT-AAAGTTTATCTCTTAACTAAGACAAACATGAATACTCATACT
*
2239795 AATCCCCATTCTTTTAAGGATTAC
448 AAT-CCCATTCTTTTTAGGATTAC
* * * * ** *
2239819 GCACCATAAACATAGTCTTCACATTAAGATTGGTGAAATTGACACTTTGGTTTCGCAAGAAAGAC
1 GCACCATAAACATAGTCTTCTCATTAGGATAGATGAAATTGATGCTTTGGTTTCGCAAGAAAGCC
* * * * ** * * * *
2239884 TTTCTTGTCC-CTAATTTTTGTAAAGTCTAAGTTCAAGCCTCAAATGAGACCAACATTGATTATA
66 TTTCTT-CCCACCAATTTTGGCAAAGTCTAAGTTCGTGCCTCAACTGAGACAAACATGGATTCTA
** * *
2239948 GTAATAATCTTTTTTTATTTTGTGATTAGGCACTATAAACACATTCT-CATCATTAGGATAAATG
130 GTAATAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTAC-TCAATAGGATAAATG
* * * * * *
2240012 GTATTAATGGTTTTCTTTTGCT-TGAAAATCATTTGTTCGCCCTATTTTCCTTAAAATCAAACTT
194 ATATTGAT-GTTTTCTTTTG-TATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTT
* * * ** * * *
2240076 TATCCCCTAAATAAGGCAAGCATTGATTCTTGTAACAGTCCCCATT-TTTCCAAGATTGAGAACC
257 CATCCCTTAAATAAAGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAA-C
* * * * *
2240140 AA-AATCACATTCCCTTCATTAGGATACT-TGACATTGAAGCCTCGGTGTCGTAAGAAAAGGTTT
321 AATAA-CACATTCCCTTCATTAGGATA-TATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTT
* * * *
2240203 TCTTTC-CCTTGTTTTTGGTAGAATTAAAGTTTGTCTCTCAACTAAGACAAACATGAATACTCAT
384 TCTTGCACC--GTTTTT-ATAGAA-TAAAGTTTATCTCTTAACTAAGACAAACATGAATACTCAT
*
2240267 ACTAATCCCCATTCTTTTAAGGATTAC
445 ACTAAT-CCCATTCTTTTTAGGATTAC
* * * * *
2240294 GCACCATAAACATAGCCTTCTCTTTAAGATAGATGAAATTGATGCTTTGGATTCGCAAGAAAGGC
1 GCACCATAAACATAGTCTTCTCATTAGGATAGATGAAATTGATGCTTTGGTTTCGCAAGAAAGCC
* * * * * ** *
2240359 TTTCTTCCTACCAATTTTTGCAAGGTCTAAATTCGTGCCTCTACTTTGATAAACATGGATTCTAG
66 TTTCTTCCCACCAATTTTGGCAAAGTCTAAGTTCGTGCCTCAACTGAGACAAACATGGATTCTAG
* ** ** * * *
2240424 AAATAATCTTCGGTCATTTTGTGATTTTGCACTATAAACACATTCTCCTCATTAGGATAAATGGT
131 TAATAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTACTCAATAGGATAAATGAT
* * * * *
2240489 ATTAATGGTTTTCTTTTGCT-TGAAAATCATTTGTTCGCCCTATTTTCCTTAAAATCAAAGTTCT
196 ATTGAT-GTTTTCTTTTG-TATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCA
* * * * ** * * *
2240553 TTCCTTAAATAAGGGAAGCATTGATTGTTGTAACAATCTCCATTCTTTTCAAGATTGGGAACCAG
259 TCCCTTAAATAAAGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAACAAT
* * * * * * *
2240618 AACCACATTTCCTTCGTTATGATACATGACATTAATGCTTTGGTGACGCAAGAAAAGGTTTTCTT
324 AA-CACATTCCCTTCATTAGGATATATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTC-T
* * * * * * *
2240683 TCCACCCTTCATTATGATAATGATAGAATCAATGTTTTTCTCTTAAATAAGACAAAAATGAATAG
387 TGCA--C--CGTT-T--T--T-ATAGAAT-AAAGTTTATCTCTTAACTAAGACAAACATGAATAC
* * * * **
2240748 TCTTAGTAA-CCCCTGTTTTTTTCAGGATTTG
441 TCATACTAATCCCAT-TCTTTTT-AGGATTAC
* ** * *
2240779 GCACCATAAACATAATCTTCTCATTAGGATAGACAAAATTGATGCTTTGGTTTTGCAAGAAAGGC
1 GCACCATAAACATAGTCTTCTCATTAGGATAGATGAAATTGATGCTTTGGTTTCGCAAGAAAGCC
* * * * * * * *
2240844 TTTCTTCTCC-CTAATTTTTGTAAGGTCTAAGTTTGTGCCTCGATTGAGACAAACATGGATTCCA
66 TTTCTTC-CCACCAATTTTGGCAAAGTCTAAGTTCGTGCCTCAACTGAGACAAACATGGATTCTA
* * ** * *
2240908 ATAATAATCTTCA-T--TTCTGTGATTATACATTATAAACACATTCTCCTCAATAGGATAAATGA
130 GTAATAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTACTCAATAGGATAAATGA
* * *
2240970 TATTGATGGTTTTCTTTTGCT-TGAAAATCATTTGTTTGCCTTATTTTCCTTAAAATCAAAGTTC
195 TATTGAT-GTTTTCTTTTG-TATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTC
* * * * * * *
2241034 ATCCCCTAAATAAGGCAAGCATTTATTCTCGTAACAGTCTCCATTCTTTTTAAGGTTAGGAATCA
258 ATCCCTTAAATAAAGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAA-CA
* * * * *
2241099 AAAACACATTCCCATCATTAGAATACTA-GACATTGATGCTTTAGG-GTCACAAGAAAAACTTTT
322 ATAACACATTCCCTTCATTAGGATA-TATGACATTGATGCTTT-GGTGTCGCAAGAAAAGCTTTT
* *
2241162 CTTGCAACCGTTTTTTATAGAATCAAAGTTTGTCTCCTAACTAAGACAAACATGAATACTCATAC
385 CTTGC-ACCG-TTTTTATAGAAT-AAAGTTTATCTCTTAACTAAGACAAACATGAATACTCATAC
* *
2241227 TAATCCCCCTTCTTTTAAGGATTAC
447 TAAT-CCCATTCTTTTTAGGATTAC
* * * * * *
2241252 GCACCATAAACATAGTCTTCACATTAAGATTGGTGAAATTGACGCTTTGGTTTCGCAAGAAAGAC
1 GCACCATAAACATAGTCTTCTCATTAGGATAGATGAAATTGATGCTTTGGTTTCGCAAGAAAGCC
* * * * * * * * *
2241317 TTTCTTGTCC-CTAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACCAACATTGATTATA
66 TTTCTT-CCCACCAATTTTGGCAAAGTCTAAGTTCGTGCCTCAACTGAGACAAACATGGATTCTA
** * *
2241381 GTAATAATCTTTTTTTATTTTGTGATTAGGCACTATAAACACATTCT-CATCATTAGGATAAATG
130 GTAATAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTAC-TCAATAGGATAAATG
* * * * * *
2241445 GTATTAATGGTTTTCTTTTGCT-TGAAAATCATTTGTTCGCCCTATTTTCCTTAAAATCAAACTT
194 ATATTGAT-GTTTTCTTTTG-TATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTT
* * * ** *
2241509 TATCCCCTAAATAAGGCAAGCATTGATTCTTGTAACAGTCTCCATT-TTTCCAAGATTGGGAACC
257 CATCCCTTAAATAAAGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAA-C
* * * * *
2241573 AA-AATCACATTCCCTTCATTAGGATACT-TGACATTGAAGCCTCGGTGTCGTAAGAAAAGGTTT
321 AATAA-CACATTCCCTTCATTAGGATA-TATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTT
* * * *
2241636 TCTTTC-CCTTGTTTTTGGTAGAATTAAAGTTTGTCTCTCAACTAAGACAAACATGAATACTCAT
384 TCTTGCACC--GTTTTT-ATAGAA-TAAAGTTTATCTCTTAACTAAGACAAACATGAATACTCAT
*
2241700 ACTAATCCCCATTCTTTTAAGGATTAC
445 ACTAAT-CCCATTCTTTTTAGGATTAC
* * * *
2241727 GCACCATAAACATAGTCTTCTCTTTAAGATAGATGAAATTGATGCTTTGGATTCGCAAGAAAGGC
1 GCACCATAAACATAGTCTTCTCATTAGGATAGATGAAATTGATGCTTTGGTTTCGCAAGAAAGCC
* * * * * ** *
2241792 TTTCTTCCTACCAATTTTTGCAAGGTCTAAATTCGTGCCTCTACTTTGATAAACATGGATTCTAG
66 TTTCTTCCCACCAATTTTGGCAAAGTCTAAGTTCGTGCCTCAACTGAGACAAACATGGATTCTAG
* ** ** * * *
2241857 AAATAATCTTCGGTCATTTTGTGATTTTGCACTATAAACACATTCTCCTCATTAGGATAAATGGT
131 TAATAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTACTCAATAGGATAAATGAT
* * ** *
2241922 ATTAATGGTTTTCTTTTGCT-TGAAAATCATTTCTTCACCCTATTTTCCTTAAAATCAAAGTTCT
196 ATTGAT-GTTTTCTTTTG-TATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCA
* * * ** * *
2241986 TTCCTTAAATAAGGCAAGCATTGATTGTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAG
259 TCCCTTAAATAAAGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAACAAT
* * * * * *
2242051 AACCACATTCCCTTCATTATGATACATGACATTAACGCTTTGGTGACGCAAGAAAAGGTTTTCTT
324 AA-CACATTCCCTTCATTAGGATATATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTC-T
* * * * *
2242116 TCCACCCTTCGTTATGATACATGATAGAATCAATGTTTTTCTCTTAAATAAGACAAAAATGAATA
387 TGCA--C--CGTT-T--T---T-ATAGAAT-AAAGTTTATCTCTTAACTAAGACAAACATGAATA
* * * * **
2242181 GTCTTACTAATCCCTGTTCTTTTCAGGATTTG
440 CTCATACTAATCCC-ATTCTTTTTAGGATTAC
* ** * *
2242213 GCACCATAAACATAATCTTCTCATTAGGATAGACAAAATTGATGCTTTGGTTTTGCAAGAAAGGC
1 GCACCATAAACATAGTCTTCTCATTAGGATAGATGAAATTGATGCTTTGGTTTCGCAAGAAAGCC
* * * * * * * *
2242278 TTTCTTACCC-CTAATTTTTGTAAGGTCTAAGTTTGTGCCTCGATTGAGACAAACATGGATTCCA
66 TTTCTT-CCCACCAATTTTGGCAAAGTCTAAGTTCGTGCCTCAACTGAGACAAACATGGATTCTA
* * ** * * *
2242342 ATAATAATCTTCA-T--TTCTGTGATTATACGCTATAAACACATTATCCTCAATAGGATAAATGA
130 GTAATAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTACTCAATAGGATAAATGA
* * *
2242404 TATTGATGGTTTTCTTTTGCT-TGAAAATCATTTGTTTGCCTTATTTTCCTTAAAATCAAAGTTC
195 TATTGAT-GTTTTCTTTTG-TATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTC
* * * * * * * *
2242468 ATCCCCTAAATAAGGCAAGCATTTATTCTCGTAACAGTCTCCATTTTTTTTAAGGTTAGGAATCA
258 ATCCCTTAAATAAAGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAA-CA
* * * * *
2242533 AAAACACATTCCCATCATTAGAATACAAGACATTGATGCTTTAGG-GTCGCAATGAAAA-CTTTT
322 ATAACACATTCCCTTCATTAGGATATATGACATTGATGCTTT-GGTGTCGCAA-GAAAAGCTTTT
* *
2242596 CTTGCAATCGTTTTTTATAGAATCAAAGTTTGTCTCTTAACTAAGACAAACATGAATACTCATAC
385 CTTGC-ACCG-TTTTTATAGAAT-AAAGTTTATCTCTTAACTAAGACAAACATGAATACTCATAC
2242661 TA
447 TA
2242663 GCACTATAAA
Statistics
Matches: 4753, Mismatches: 739, Indels: 349
0.81 0.13 0.06
Matches are distributed among these distances:
435 118 0.02
436 188 0.04
437 14 0.00
438 1 0.00
439 1 0.00
440 1 0.00
442 1 0.00
444 10 0.00
445 6 0.00
446 4 0.00
448 2 0.00
449 1 0.00
450 10 0.00
451 1 0.00
452 2 0.00
453 4 0.00
454 2 0.00
457 2 0.00
458 4 0.00
459 2 0.00
460 1 0.00
461 10 0.00
462 1 0.00
463 2 0.00
465 5 0.00
466 6 0.00
467 7 0.00
468 2 0.00
469 1 0.00
471 1 0.00
472 1 0.00
473 339 0.07
474 103 0.02
475 1621 0.34
476 1057 0.22
477 23 0.00
478 2 0.00
479 10 0.00
480 14 0.00
481 5 0.00
482 209 0.04
483 407 0.09
484 30 0.01
485 225 0.05
486 295 0.06
487 2 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (470 bp):
GCACCATAAACATAGTCTTCTCATTAGGATAGATGAAATTGATGCTTTGGTTTCGCAAGAAAGCC
TTTCTTCCCACCAATTTTGGCAAAGTCTAAGTTCGTGCCTCAACTGAGACAAACATGGATTCTAG
TAATAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTACTCAATAGGATAAATGAT
ATTGATGTTTTCTTTTGTATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC
CCTTAAATAAAGCAAGCATTGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAACAATAA
CACATTCCCTTCATTAGGATATATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTGCA
CCGTTTTTATAGAATAAAGTTTATCTCTTAACTAAGACAAACATGAATACTCATACTAATCCCAT
TCTTTTTAGGATTAC
Found at i:2238993 original size:476 final size:475
Alignment explanation
Indices: 2238098--2242662 Score: 5287
Period size: 476 Copynumber: 9.6 Consensus size: 475
2238088 CACTCATTTT
* * * * * *
2238098 ATGATATTGATGATTTTCTTTTACTTGAGAATCTTTTGTTTGCCCTATTTTCCTTAAAATCAAAG
1 ATGATATTAATGGTTTTCTTTTGCTTGAAAATCATTTGTTCGCCCTATTTTCCTTAAAATCAAAG
* * * *
2238163 TTTATCCCTTAAATAAGGCAAGCATTGATTCTTGTAATAGTCTCCATTCTTTTCAGGATTGGGAA
66 TTCATCCCCTAAATAAGGCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAA
* ** * * * * *
2238228 TCAATAATGCATTCCCTTCGTTAGAATATACGACGTTGATGCTTTGGGGTCGCAAGAAAAGCTTT
131 CCAA-AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCGCAAGAAAAGCTTT
* * * * *
2238293 TC-TTGCAACCATTTTTTCTAGAATCAAAGTTTGCCTCTTAACTAAGACAAACATGAATACCCAT
195 TCTTTGCAACCTTTTTTTATAGAATCAAAGTTTGTCTCCTAACTAAGACAAACATGAATACTCAT
* * * * *
2238357 GCTAATCCCCATTCTTTTAAGGATTACACACCATAAACATAGTCTTCTCATTAGGACAGACGAAA
260 ACTAATCCCCATTCTTTTAAGGATTACGCACCATAAACATAGTCTTCTCATTAAGATAGATGAAA
* * * * *
2238422 TTGACGCTTTGGTTTCGCAAGAAAAGTTTTCTTC-CCACAAATTTTTGCAAGGTCTAAGTTCGTG
325 TTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCTCC-CTAATTTTTGTAAGGTCTAAGTTCGTG
* * **
2238486 CCTTAATTAAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTATGCGTTATAA
389 CCTCAATTGAGACAAACATGGATTCTAGTAATAATCTTCATT-ATTTTGTGATTATGCACTATAA
* *
2238551 ATACATTCTCCTCAATAGGATAA
453 ACACATTCTCCTCATTAGGATAA
* * * * *
2238574 ATCATATTGATGGTTTTCTTTTGCTTGAAAACCTTTTGTTTGCCCTATTTTTCC-TAAAATCAAA
1 ATGATATTAATGGTTTTCTTTTGCTTGAAAATCATTTGTTCGCCCTA-TTTTCCTTAAAATCAAA
* * * * *
2238638 GTTCATCGCTTAAATAAGGCAAGCATTGATT-TTCGTAATAGTCTCCATTCTTTTTAGGATTGGG
65 GTTCATCCCCTAAATAAGGCAAGCATTGATTCTT-GTAACAGTCTCCATTCTTTTCAAGATTGGG
** * * * *
2238702 AATTAATAACACATTCCCTTCAGTAGGATATACGACATCGATGCTTTGGGGTCGCAAGAAAAGCT
129 AACCAA-AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCGCAAGAAAAGCT
* *
2238767 TTT-TTTGCAACCATTTTTTATAGAATTAAAGTTTGTCTCCTAACTAAGACAAACATGAATACTC
193 TTTCTTTGCAACCTTTTTTTATAGAATCAAAGTTTGTCTCCTAACTAAGACAAACATGAATACTC
* * *
2238831 ATACTAATCCCCATTCTTTTAAGGATTACGCACCATAAACATAGTCTTCACATTAAGATTGGTGA
258 ATACTAATCCCCATTCTTTTAAGGATTACGCACCATAAACATAGTCTTCTCATTAAGATAGATGA
* * * * * *
2238896 AATTGACGCTTTGGTTTCGCAAGAAAGACTTTCTTGTCCCTAATTTTTGAAAAGTCTAAGTTCAT
323 AATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCTCCCTAATTTTTGTAAGGTCTAAGTTCGT
* * * ** * *
2238961 GCCTCAAATGAGACCAAA-ATTGATTATAGTAATAATCTTTTTTTATTTTGTGGTTAGGCACTAT
388 GCCTCAATTGAGA-CAAACATGGATTCTAGTAATAATC-TTCATTATTTTGTGATTATGCACTAT
*
2239025 AAACACATTCTCATCATTAGGATAA
451 AAACACATTCTCCTCATTAGGATAA
* *
2239050 ATGGTAGTAATGGTTTTCTTTTGCTTGAAAATCATTTGTTCGCCCTATTTTCCTTAAAATCAAAG
1 ATGATATTAATGGTTTTCTTTTGCTTGAAAATCATTTGTTCGCCCTATTTTCCTTAAAATCAAAG
* * * * * *
2239115 TTCTTTCCTTAAATAAGGGAAGCATTGATTGTTGTAACAATCTCCATTCTTTTCAAGATTGGGAA
66 TTCATCCCCTAAATAAGGCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAA
* * * * * * * *
2239180 CCAGAACCACATTTCCTTCGTTATGATACATGACATTAATGCTTTGGTGACGCAAGAAAAGGTTT
131 CCA-AAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCGCAAGAAAAGCTTT
* * * * * *
2239245 TCTTT-CCACCTTTCGTTATGATAATGATAGAATCAACGTTTTTCTCTTAAATAAGACAAAAATG
195 TCTTTGCAACC-TT--TT-T--T--T-ATAGAATCAAAGTTTGTCTCCTAACTAAGACAAACATG
* * * * * ** *
2239309 AATAGTCTTAGTAA-CCCCTGTTTTTTTTCAA-GATTTGGCACCATAAACATAATCTTCTCATTA
251 AATACTCATACTAATCCCC--ATTCTTTT-AAGGATTACGCACCATAAACATAGTCTTCTCATTA
* ** *
2239372 GGATAGACAAAATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCTCCCTAATTTTTGTAAGGT
313 AGATAGATGAAATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCTCCCTAATTTTTGTAAGGT
* * * * *
2239437 CTAAGTTTGTGCCTCGATTGAGACAAACATGGATTCCAATAATAATCTTCA-T-TTCTGTGATTA
378 CTAAGTTCGTGCCTCAATTGAGACAAACATGGATTCTAGTAATAATCTTCATTATTTTGTGATTA
* * *
2239500 TACATTATAAACACATTCTCCTCAATAGGATAA
443 TGCACTATAAACACATTCTCCTCATTAGGATAA
* * *
2239533 ATGATATTGATGGTTTTCTTTTGCTTGAAAATCATTTGTTTGCCTTATTTTCCTTAAAATCAAAG
1 ATGATATTAATGGTTTTCTTTTGCTTGAAAATCATTTGTTCGCCCTATTTTCCTTAAAATCAAAG
* * * * *
2239598 TTCATCCCCTAAATAAGGCAAGCATTTATTCTCGTAACAGTCTCCATTCTTTTTAAGGTTAGGAA
66 TTCATCCCCTAAATAAGGCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAA
* * * * * *
2239663 TCAAAAACACATTCCCATCATTAGAATACAGGACATTGATGCTTTAGGGTCGCAAGAAAAACTTT
131 -CCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCGCAAGAAAAGCTTT
*
2239728 TC-TTGCAACCGTTTTTTATAGAATCAAAGTTTGTCTCCTAACTAAGACAAACATGAATACTCAT
195 TCTTTGCAACCTTTTTTTATAGAATCAAAGTTTGTCTCCTAACTAAGACAAACATGAATACTCAT
* * *
2239792 ACTAATCCCCATTCTTTTAAGGATTACGCACCATAAACATAGTCTTCACATTAAGATTGGTGAAA
260 ACTAATCCCCATTCTTTTAAGGATTACGCACCATAAACATAGTCTTCTCATTAAGATAGATGAAA
** * * * **
2239857 TTGACACTTTGGTTTCGCAAGAAAGACTTTCTTGTCCCTAATTTTTGTAAAGTCTAAGTTCAAGC
325 TTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCTCCCTAATTTTTGTAAGGTCTAAGTTCGTGC
* * * * ** *
2239922 CTCAAATGAGACCAACATTGATTATAGTAATAATCTTTTTTTATTTTGTGATTAGGCACTATAAA
390 CTCAATTGAGACAAACATGGATTCTAGTAATAATC-TTCATTATTTTGTGATTATGCACTATAAA
*
2239987 CACATTCTCATCATTAGGATAA
454 CACATTCTCCTCATTAGGATAA
* *
2240009 ATGGTATTAATGGTTTTCTTTTGCTTGAAAATCATTTGTTCGCCCTATTTTCCTTAAAATCAAAC
1 ATGATATTAATGGTTTTCTTTTGCTTGAAAATCATTTGTTCGCCCTATTTTCCTTAAAATCAAAG
* * * *
2240074 TTTATCCCCTAAATAAGGCAAGCATTGATTCTTGTAACAGTCCCCATT-TTTCCAAGATTGAGAA
66 TTCATCCCCTAAATAAGGCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAA
* * * * * * *
2240138 CCAAAATCACATTCCCTTCATTAGGATACTTGACATTGAAGCCTCGGTGTCGTAAGAAAAGGTTT
131 CCAAAA-CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCGCAAGAAAAGCTTT
* *
2240203 TCTTT-C--CCTTGTTTTTGGTAGAATTAAAGTTTGTCT-CTCAACTAAGACAAACATGAATACT
195 TCTTTGCAACCTT-TTTTT-ATAGAATCAAAGTTTGTCTCCT-AACTAAGACAAACATGAATACT
* *
2240264 CATACTAATCCCCATTCTTTTAAGGATTACGCACCATAAACATAGCCTTCTCTTTAAGATAGATG
257 CATACTAATCCCCATTCTTTTAAGGATTACGCACCATAAACATAGTCTTCTCATTAAGATAGATG
* * * *
2240329 AAATTGATGCTTTGGATTCGCAAGAAAGGCTTTCTTCCTACC-AATTTTTGCAAGGTCTAAATTC
322 AAATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTT-CTCCCTAATTTTTGTAAGGTCTAAGTTC
* * * * * * *
2240393 GTGCCTCTACTT-TGATAAACATGGATTCTAGAAATAATCTTCGGTCATTTTGTGATTTTGCACT
386 GTGCCTC-AATTGAGACAAACATGGATTCTAGTAATAATCTTC-ATTATTTTGTGATTATGCACT
2240457 ATAAACACATTCTCCTCATTAGGATAA
449 ATAAACACATTCTCCTCATTAGGATAA
*
2240484 ATGGTATTAATGGTTTTCTTTTGCTTGAAAATCATTTGTTCGCCCTATTTTCCTTAAAATCAAAG
1 ATGATATTAATGGTTTTCTTTTGCTTGAAAATCATTTGTTCGCCCTATTTTCCTTAAAATCAAAG
* * * * * *
2240549 TTCTTTCCTTAAATAAGGGAAGCATTGATTGTTGTAACAATCTCCATTCTTTTCAAGATTGGGAA
66 TTCATCCCCTAAATAAGGCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAA
* * * * * * * *
2240614 CCAGAACCACATTTCCTTCGTTATGATACATGACATTAATGCTTTGGTGACGCAAGAAAAGGTTT
131 CCA-AAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCGCAAGAAAAGCTTT
* * * * * * *
2240679 TCTTTCCACCCTTCATTATGATAATGATAGAATCAATGTTTTTCTCTTAAATAAGACAAAAATGA
195 TCTTTGCAACCTT--TT-T--T--T-ATAGAATCAAAGTTTGTCTCCTAACTAAGACAAACATGA
* * * * * * ** * *
2240744 ATAGTCTTAGTAA-CCCCTGTTTTTTTCAGGATTTGGCACCATAAACATAATCTTCTCATTAGGA
252 ATACTCATACTAATCCCC-ATTCTTTTAAGGATTACGCACCATAAACATAGTCTTCTCATTAAGA
** *
2240808 TAGACAAAATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCTCCCTAATTTTTGTAAGGTCTA
316 TAGATGAAATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCTCCCTAATTTTTGTAAGGTCTA
* * * * * *
2240873 AGTTTGTGCCTCGATTGAGACAAACATGGATTCCAATAATAATCTTCA-T-TTCTGTGATTATAC
381 AGTTCGTGCCTCAATTGAGACAAACATGGATTCTAGTAATAATCTTCATTATTTTGTGATTATGC
* *
2240936 ATTATAAACACATTCTCCTCAATAGGATAA
446 ACTATAAACACATTCTCCTCATTAGGATAA
* * *
2240966 ATGATATTGATGGTTTTCTTTTGCTTGAAAATCATTTGTTTGCCTTATTTTCCTTAAAATCAAAG
1 ATGATATTAATGGTTTTCTTTTGCTTGAAAATCATTTGTTCGCCCTATTTTCCTTAAAATCAAAG
* * * * *
2241031 TTCATCCCCTAAATAAGGCAAGCATTTATTCTCGTAACAGTCTCCATTCTTTTTAAGGTTAGGAA
66 TTCATCCCCTAAATAAGGCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAA
* * * * * *
2241096 TCAAAAACACATTCCCATCATTAGAATAC-TAGACATTGATGCTTTAGGGTCACAAGAAAAACTT
131 -CCAAAACACATTCCCTTCATTAGGATACAT-GACATTGATGCTTTGGGGTCGCAAGAAAAGCTT
*
2241160 TTC-TTGCAACCGTTTTTTATAGAATCAAAGTTTGTCTCCTAACTAAGACAAACATGAATACTCA
194 TTCTTTGCAACCTTTTTTTATAGAATCAAAGTTTGTCTCCTAACTAAGACAAACATGAATACTCA
* * * *
2241224 TACTAATCCCCCTTCTTTTAAGGATTACGCACCATAAACATAGTCTTCACATTAAGATTGGTGAA
259 TACTAATCCCCATTCTTTTAAGGATTACGCACCATAAACATAGTCTTCTCATTAAGATAGATGAA
* * * * *
2241289 ATTGACGCTTTGGTTTCGCAAGAAAGACTTTCTTGTCCCTAATTTTTGTAAAGTCTAAGTTCATG
324 ATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCTCCCTAATTTTTGTAAGGTCTAAGTTCGTG
* * * * ** *
2241354 CCTCAAATGAGACCAACATTGATTATAGTAATAATCTTTTTTTATTTTGTGATTAGGCACTATAA
389 CCTCAATTGAGACAAACATGGATTCTAGTAATAATC-TTCATTATTTTGTGATTATGCACTATAA
*
2241419 ACACATTCTCATCATTAGGATAA
453 ACACATTCTCCTCATTAGGATAA
* *
2241442 ATGGTATTAATGGTTTTCTTTTGCTTGAAAATCATTTGTTCGCCCTATTTTCCTTAAAATCAAAC
1 ATGATATTAATGGTTTTCTTTTGCTTGAAAATCATTTGTTCGCCCTATTTTCCTTAAAATCAAAG
* *
2241507 TTTATCCCCTAAATAAGGCAAGCATTGATTCTTGTAACAGTCTCCATT-TTTCCAAGATTGGGAA
66 TTCATCCCCTAAATAAGGCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAA
* * * * * * *
2241571 CCAAAATCACATTCCCTTCATTAGGATACTTGACATTGAAGCCTCGGTGTCGTAAGAAAAGGTTT
131 CCAAAA-CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCGCAAGAAAAGCTTT
* *
2241636 TCTTT-C--CCTTGTTTTTGGTAGAATTAAAGTTTGTCT-CTCAACTAAGACAAACATGAATACT
195 TCTTTGCAACCTT-TTTTT-ATAGAATCAAAGTTTGTCTCCT-AACTAAGACAAACATGAATACT
*
2241697 CATACTAATCCCCATTCTTTTAAGGATTACGCACCATAAACATAGTCTTCTCTTTAAGATAGATG
257 CATACTAATCCCCATTCTTTTAAGGATTACGCACCATAAACATAGTCTTCTCATTAAGATAGATG
* * * *
2241762 AAATTGATGCTTTGGATTCGCAAGAAAGGCTTTCTTCCTACC-AATTTTTGCAAGGTCTAAATTC
322 AAATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTT-CTCCCTAATTTTTGTAAGGTCTAAGTTC
* * * * * * *
2241826 GTGCCTCTACTT-TGATAAACATGGATTCTAGAAATAATCTTCGGTCATTTTGTGATTTTGCACT
386 GTGCCTC-AATTGAGACAAACATGGATTCTAGTAATAATCTTC-ATTATTTTGTGATTATGCACT
2241890 ATAAACACATTCTCCTCATTAGGATAA
449 ATAAACACATTCTCCTCATTAGGATAA
* * *
2241917 ATGGTATTAATGGTTTTCTTTTGCTTGAAAATCATTTCTTCACCCTATTTTCCTTAAAATCAAAG
1 ATGATATTAATGGTTTTCTTTTGCTTGAAAATCATTTGTTCGCCCTATTTTCCTTAAAATCAAAG
* * * *
2241982 TTCTTTCCTTAAATAAGGCAAGCATTGATTGTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAA
66 TTCATCCCCTAAATAAGGCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAA
* * * * * * *
2242047 CCAGAACCACATTCCCTTCATTATGATACATGACATTAACGCTTTGGTGACGCAAGAAAAGGTTT
131 CCA-AAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCGCAAGAAAAGCTTT
* * * * * * *
2242112 TCTTTCCACCCTTCGTTATGATACATGATAGAATCAATGTTTTTCTCTTAAATAAGACAAAAATG
195 TCTTTGCAACCTT--TT-T--T---T-ATAGAATCAAAGTTTGTCTCCTAACTAAGACAAACATG
* * ** * ** * *
2242177 AATAGTCTTACTAATCCCTGTTCTTTTCAGGATTTGGCACCATAAACATAATCTTCTCATTAGGA
251 AATACTCATACTAATCCCCATTCTTTTAAGGATTACGCACCATAAACATAGTCTTCTCATTAAGA
** *
2242242 TAGACAAAATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTAC-CCCTAATTTTTGTAAGGTCT
316 TAGATGAAATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTT-CTCCCTAATTTTTGTAAGGTCT
* * * * * *
2242306 AAGTTTGTGCCTCGATTGAGACAAACATGGATTCCAATAATAATCTTCA-T-TTCTGTGATTATA
380 AAGTTCGTGCCTCAATTGAGACAAACATGGATTCTAGTAATAATCTTCATTATTTTGTGATTATG
* * *
2242369 CGCTATAAACACATTATCCTCAATAGGATAA
445 CACTATAAACACATTCTCCTCATTAGGATAA
* * *
2242400 ATGATATTGATGGTTTTCTTTTGCTTGAAAATCATTTGTTTGCCTTATTTTCCTTAAAATCAAAG
1 ATGATATTAATGGTTTTCTTTTGCTTGAAAATCATTTGTTCGCCCTATTTTCCTTAAAATCAAAG
* * * * * *
2242465 TTCATCCCCTAAATAAGGCAAGCATTTATTCTCGTAACAGTCTCCATTTTTTTTAAGGTTAGGAA
66 TTCATCCCCTAAATAAGGCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAA
* * * * *
2242530 TCAAAAACACATTCCCATCATTAGAATACAAGACATTGATGCTTTAGGGTCGCAATGAAAA-CTT
131 -CCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCGCAA-GAAAAGCTT
* * *
2242594 TTC-TTGCAATCGTTTTTTATAGAATCAAAGTTTGTCTCTTAACTAAGACAAACATGAATACTCA
194 TTCTTTGCAACCTTTTTTTATAGAATCAAAGTTTGTCTCCTAACTAAGACAAACATGAATACTCA
2242658 TACTA
259 TACTA
2242663 GCACTATAAA
Statistics
Matches: 3454, Mismatches: 550, Indels: 173
0.83 0.13 0.04
Matches are distributed among these distances:
472 2 0.00
473 349 0.10
474 82 0.02
475 784 0.23
476 1004 0.29
477 31 0.01
478 1 0.00
479 14 0.00
480 10 0.00
481 10 0.00
482 212 0.06
483 407 0.12
484 25 0.01
485 221 0.06
486 299 0.09
487 3 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (475 bp):
ATGATATTAATGGTTTTCTTTTGCTTGAAAATCATTTGTTCGCCCTATTTTCCTTAAAATCAAAG
TTCATCCCCTAAATAAGGCAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAA
CCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCGCAAGAAAAGCTTTT
CTTTGCAACCTTTTTTTATAGAATCAAAGTTTGTCTCCTAACTAAGACAAACATGAATACTCATA
CTAATCCCCATTCTTTTAAGGATTACGCACCATAAACATAGTCTTCTCATTAAGATAGATGAAAT
TGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCTCCCTAATTTTTGTAAGGTCTAAGTTCGTGCC
TCAATTGAGACAAACATGGATTCTAGTAATAATCTTCATTATTTTGTGATTATGCACTATAAACA
CATTCTCCTCATTAGGATAA
Found at i:2242914 original size:296 final size:294
Alignment explanation
Indices: 2242371--2242953 Score: 723
Period size: 296 Copynumber: 2.0 Consensus size: 294
2242361 TGATTATACG
* **
2242371 CTATAAACACATTATCCTCAATAGGATAAATGATATTGATGGTTTTCTTTTGCTTGAAAATCATT
1 CTATAAACACATTATCATCAATAGGATAAATGATATTGATGGTTTTCTTTTGCAGGAAAATCATT
* * ** *
2242436 TGTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCCTAAATAAGGCAAGCATTTATTCTCGTA
66 TGTTTACCCTATTTTCCTTAAAATCAAAGTTCATCCCCTAAATAAGGCAAGCATAGATTCTCGAA
* * * * * * *
2242501 ACAGTCTCCATTTTTTTTAAGGTTAGGAATCAAAAACACATTCCCATCATTAGAATACAAGACAT
131 ACAATCACCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCCATCATAAGAATACAAGACAT
*
2242566 TGATGCTTTAGGGTCGCAATGAAAACTTTTCTTGCAATCGTTTTTTATAGAATCAAAGTTTGTCT
196 TGACGCTTTAGGGTCGCAATGAAAACTTTTCTTGCAATCGTTTTTTATAGAATCAAAGTTTGTC-
*
2242631 CTTAACTAAGACAAACATGAATACTCATACTAGCA
260 CTCAACTAAGACAAACATGAATACTCATACTAGCA
* * *
2242666 CTATAAACACATTCTCATCATTAGGATAAATGATATTGATGGTTTTTTTTTTGCAGGAAAAT-AT
1 CTATAAACACATTATCATCAATAGGATAAATGATATTGATGG-TTTTCTTTTGCAGGAAAATCAT
* * *
2242730 TT-TCTCTACCCTATTTTCCTTAAAATCAATGTTCATCCCTTAAATAAGGCTAGCATAGATTCTT
65 TTGT-T-TACCCTATTTTCCTTAAAATCAAAGTTCATCCCCTAAATAAGGCAAGCATAGATTC-T
* * * * **
2242794 C-AAACAATCACCGTTCTTTTCAAGATTAGGAACCAAAATCACATT-CCTTACATAAGGATACTT
127 CGAAACAATCACCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCCAT-CATAAGAATACAA
* * * *
2242857 GACATTGACGCTTT-GGTGTCGCAA-GAAAAGGTTTTCTTTCCA-C-TATTTTTGATAGAATGAA
191 GACATTGACGCTTTAGG-GTCGCAATGAAAA-CTTTTCTTGCAATCGT-TTTTT-ATAGAATCAA
2242918 AGTTTGTCCTCAACTAAGACAAACATGAATACTCAT
252 AGTTTGTCCTCAACTAAGACAAACATGAATACTCAT
2242954 GCTAATCCCC
Statistics
Matches: 246, Mismatches: 33, Indels: 18
0.83 0.11 0.06
Matches are distributed among these distances:
294 2 0.01
295 87 0.35
296 155 0.63
297 2 0.01
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.36
Consensus pattern (294 bp):
CTATAAACACATTATCATCAATAGGATAAATGATATTGATGGTTTTCTTTTGCAGGAAAATCATT
TGTTTACCCTATTTTCCTTAAAATCAAAGTTCATCCCCTAAATAAGGCAAGCATAGATTCTCGAA
ACAATCACCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCCATCATAAGAATACAAGACAT
TGACGCTTTAGGGTCGCAATGAAAACTTTTCTTGCAATCGTTTTTTATAGAATCAAAGTTTGTCC
TCAACTAAGACAAACATGAATACTCATACTAGCA
Found at i:2243391 original size:316 final size:315
Alignment explanation
Indices: 2242985--2243612 Score: 874
Period size: 316 Copynumber: 2.0 Consensus size: 315
2242975 GATTACGCCG
* *
2242985 CATAAACATAGTCTTCTCATTAGGATAGACACAATTGATGATTTCGTTTCGCAAGAAAGGCTTTT
1 CATAAACATAGTCTTCTCATTAGGATAGACACAATTGATGATTTCGTTTCACAAGAAAGGCTTTC
*
2243050 TTCCCACCAATTTTTGCAAAGTCTAAGTCCGTGCCTCAATTGAGACAACA-ATG-GATTCTAGG-
66 TTCCCACCAATTTTTGCAAAGTCTAAGTCCGTGCCTCAACTGAGACAA-ATATGTG-TTC-AGGT
*
2243112 AAAAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCTCATTAAGATAAATGATA
128 AAAAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATAAATGATA
*
2243177 CTT-ATGGTTTTCTTTTGCATGAAAA-ACTTTTCTTCACCCTACTTTCCTTAAAATCAAAGATCA
193 -TTGATGGTTTTCTTTTGCACGAAAATA-TTTTCTTCACCCTACTTTCCTTAAAATCAAAGATCA
* * * *
2243240 TCCCTTAAATAAGGCAATCATTGATTC-TCATAGCAGTCTCCATTCTTTTCAAGATTGGCAC
256 TCCCTTAAATAAGGCAAGCA-TAATTCTTCA-AACAGTCTCCATTCATTTCAAGATTGGCAC
* * *
2243301 CATAAACATAGTCTTCTTATTAGGATAGACGA-AATTGATGCTTTGGTTTCACAAGAAAGGCTTT
1 CATAAACATAGTCTTCTCATTAGGATAGAC-ACAATTGATGATTTCGTTTCACAAGAAAGGCTTT
* * * * * *
2243365 CTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTTACCTGGGACAAATATGTGTTCCGGTAA
65 CTTCCCACCAATTTTTGCAAAGTCTAAGTCCGTGCCTCAACTGAGACAAATATGTGTTCAGGTAA
* * * *
2243430 TAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATCAATTATATT
130 AAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATAAATGATATT
** * * *
2243495 GATGGTTTTCTTTTGCACGAAAATATTTTCTTTGCCCTATTTTCCTTAAAATCAATGTTCATCCC
195 GATGGTTTTCTTTTGCACGAAAATATTTTCTTCACCCTACTTTCCTTAAAATCAAAGATCATCCC
* *
2243560 TTAAATAAGGCTAGCATAATTCTTCAAACAGTCTCGATTCATTTCAAGATTGG
260 TTAAATAAGGCAAGCATAATTCTTCAAACAGTCTCCATTCATTTCAAGATTGG
2243613 GAACCAAAAT
Statistics
Matches: 276, Mismatches: 29, Indels: 15
0.86 0.09 0.05
Matches are distributed among these distances:
315 34 0.12
316 239 0.87
317 3 0.01
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.36
Consensus pattern (315 bp):
CATAAACATAGTCTTCTCATTAGGATAGACACAATTGATGATTTCGTTTCACAAGAAAGGCTTTC
TTCCCACCAATTTTTGCAAAGTCTAAGTCCGTGCCTCAACTGAGACAAATATGTGTTCAGGTAAA
AATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATAAATGATATTG
ATGGTTTTCTTTTGCACGAAAATATTTTCTTCACCCTACTTTCCTTAAAATCAAAGATCATCCCT
TAAATAAGGCAAGCATAATTCTTCAAACAGTCTCCATTCATTTCAAGATTGGCAC
Found at i:2243641 original size:316 final size:317
Alignment explanation
Indices: 2242985--2243684 Score: 857
Period size: 316 Copynumber: 2.2 Consensus size: 317
2242975 GATTACGCCG
* * * * *
2242985 CATAAACATAGTCTTC-TCATTAGGATAGAC-ACAATTGATGATTTCGTTTCGCAAGAAAGGCTT
1 CATAAACACAGTCTCCTTCATTAGGATAGACGA-AATTGATGCTTTGGTTTCACAAGAAAGGCTT
* *
2243048 TTTTCCCACCAATTTTTGCAAAGTCTAAGTCCGTGCCTCAATTGAGACAACAATGGATTCTAGGA
65 TCTTCCCACCAATTTTTGCAAAGTCTAAGTCCGTGCCTCAACTGAGACAACAATGGATTCTAGGA
*
2243113 AAAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCTCATTAAGATAAATGATAC
130 AAAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATAAATGATAC
*
2243178 TTATGGTTTTCTTTTGCATGAAAAACTTTTCTTCACCCTACTTTCCTTAAAATCAAAGATCATCC
195 TTATGGTTTTCTTTTGCACGAAAAACTTTTCTTCACCCTACTTTCCTTAAAATCAAAGATCATCC
* * * * *
2243243 CTTAAATAAGGCAATCATTGATTCTCATAGCAGTCTCCATTCTTTTCAAGATTGGCAC
260 CTTAAATAAGGCAAGCATTAATTCTCATAACAGTCTCCATTCATTTCAAGATTGGAAC
* *
2243301 CATAAACATAGTCTTCTT-ATTAGGATAGACGAAATTGATGCTTTGGTTTCACAAGAAAGGCTTT
1 CATAAACACAGTCTCCTTCATTAGGATAGACGAAATTGATGCTTTGGTTTCACAAGAAAGGCTTT
* * * * * *
2243365 CTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTTACCTGGGACAA-ATATGTG-TTC-CGG
66 CTTCCCACCAATTTTTGCAAAGTCTAAGTCCGTGCCTCAACTGAGACAACA-ATG-GATTCTAGG
* * * *
2243427 TAATAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATCAATTAT
129 -AAAAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATAAATGAT
** * * *
2243492 A-TTGATGGTTTTCTTTTGCACGAAAATA-TTTTCTTTGCCCTATTTTCCTTAAAATCAATGTTC
193 ACTT-ATGGTTTTCTTTTGCACGAAAA-ACTTTTCTTCACCCTACTTTCCTTAAAATCAAAGATC
* *
2243555 ATCCCTTAAATAAGGCTAGCA-TAATTCTTCA-AACAGTCTCGATTCATTTCAAGATTGGGAAC
256 ATCCCTTAAATAAGGCAAGCATTAATTC-TCATAACAGTCTCCATTCATTTCAAGATT-GGAAC
* * *** * * *
2243617 CA-AAATCGCATTC-CCTTCATTAGGATACTTGACATTGATGCTTTGGTGTCACAAGAAAAGGTT
1 CATAAA-CACAGTCTCCTTCATTAGGATAGACGAAATTGATGCTTTGGTTTCACAAG-AAAGGCT
2243680 TTCTT
64 TTCTT
2243685 TTTAGTATTT
Statistics
Matches: 333, Mismatches: 39, Indels: 23
0.84 0.10 0.06
Matches are distributed among these distances:
315 38 0.11
316 280 0.84
317 15 0.05
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.36
Consensus pattern (317 bp):
CATAAACACAGTCTCCTTCATTAGGATAGACGAAATTGATGCTTTGGTTTCACAAGAAAGGCTTT
CTTCCCACCAATTTTTGCAAAGTCTAAGTCCGTGCCTCAACTGAGACAACAATGGATTCTAGGAA
AAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAAGATAAATGATACT
TATGGTTTTCTTTTGCACGAAAAACTTTTCTTCACCCTACTTTCCTTAAAATCAAAGATCATCCC
TTAAATAAGGCAAGCATTAATTCTCATAACAGTCTCCATTCATTTCAAGATTGGAAC
Found at i:2243960 original size:794 final size:791
Alignment explanation
Indices: 2242663--2244376 Score: 2587
Period size: 794 Copynumber: 2.2 Consensus size: 791
2242653 ACTCATACTA
* * *
2242663 GCACTATAAACACATTCTCATCATTAGGATAAATGATATTGATGGTTTTTTTTTTGCAGGAAAAT
1 GCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGG-TTTTCTTTTGCACGAAAAT
* *
2242728 ATTTTCTCTACCCTATTTTCCTTAAAATCAATGTTCATCCCTTAAATAAGGCTAGCATAGATTCT
65 ATTTTCTTTGCCCTATTTTCCTTAAAATCAATGTTCATCCCTTAAATAAGGCTAGCATAGATTCT
*
2242793 TCAAACAATCACCGTTCTTTTCAAGATTAGGAACCAAAATCACATTCCTTACATAAGGATACTTG
130 TCAAACAATCACCGTTCATTTCAAGATTAGGAACCAAAATCACATTCCTTACATAAGGATACTTG
*
2242858 ACATTGACGCTTTGGTGTCGCAAGAAAAGGTTTTCTTTCCACTATTTTTGATAGAATGAAAGTTT
195 ACATTGACGCTTTGGTGTCACAAGAAAAGGTTTTCTTTCCACTATTTTTGATAGAATGAAAGTTT
* *
2242923 GTCCTCAACTAAGACAAACATGAATACTCATGCTAATCCCCATTTTTTTAAGGATTACGCCGCAT
260 GTCCTCAACTAAGACAAACATGAATACTCATGCTAATCCCCATTCTTTTAAGGATTACGCCCCAT
* * **
2242988 AAACATAGTCTTCTCATTAGGATAGACACAATTGATGATTTCGTTTCGCAAGAAAGGCTTTTTTC
325 AAACATAGTCTTCTCATTAGGATAGACACAATTGACGATTTCGTTTCACAAGAAAGGCTTCCTTC
* * *
2243053 CCACCAATTTTTGCAAAGTCTAAGTCCGTGCCTCAATTGAGACAACAATGGATTCTAGGAAAAAT
390 CCACCAATTTTTGCAAAGTCTAAGTCCGTGCCTCAACTAAGACAACAATGAATTCTAGGAAAAAT
*
2243118 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCTCATTAAGATAAATGATACTTATG
455 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCCCATTAAGATAAATGATACTTATG
2243183 GTTTTCTTTTGCATGAAAAACTTTTCTTCACCCTACTTTCCTTAAAATCAAAGATCATCCCTTAA
520 GTTTTCTTTTGCATGAAAAACTTTTCTTCACCCTACTTTCCTTAAAATCAAAGATCATCCCTTAA
* * *
2243248 ATAAGGCAATCATTGATTCTCATAGCAGTCTCCATTCTTTTCAAGATTGGCACCATAAACATAGT
585 ATAAGGCAAGCACTGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGCACCATAAACATAGT
* *
2243313 CTTCTTATTAGGATAGACGAAATTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATT
650 CTTCTCATTAAGATAGACGAAATTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATT
* * ** * * * * * *
2243378 TTTGTAAAGTCTAAGT-TCGTGCCTTACCTGGGACAAATATGTG-TTCCGGTAATAATCTTCATT
715 TTTGCAAAGTCTAAGTCT-GTGCCTCAAATGAGACAAACATG-GACTACAGTAATAATATTCATT
*
2243441 CATTTTGTGATTAG
778 AATTTTGTGATTAG
* *
2243455 GCACTATAAACACATTCTCCTCATTAGGATCAATTATATTGATGGTTTTCTTTTGCACGAAAATA
1 GCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCACGAAAATA
2243520 TTTTCTTTGCCCTATTTTCCTTAAAATCAATGTTCATCCCTTAAATAAGGCTAGCATA-ATTCTT
66 TTTTCTTTGCCCTATTTTCCTTAAAATCAATGTTCATCCCTTAAATAAGGCTAGCATAGATTCTT
* * * * *
2243584 CAAACAGTC-TCGATTCATTTCAAGATTGGGAACCAAAATCGCATTCCCTT-CATTAGGATACTT
131 CAAACAATCACCG-TTCATTTCAAGATTAGGAACCAAAATCACATT-CCTTACATAAGGATACTT
* ** *
2243647 GACATTGATGCTTTGGTGTCACAAGAAAAGGTTTTCTTTTTAGTATTTTTGATAGAATGAAAGTT
194 GACATTGACGCTTTGGTGTCACAAGAAAAGGTTTTCTTTCCACTATTTTTGATAGAATGAAAGTT
2243712 TGTCTCTCAACTAAGACAAACATGAATACTCATGCTAATCCCCATTCTTTTAAGGATTACGCACT
259 TGTC-CTCAACTAAGACAAACATGAATACTCATGCTAATCCCCATTCTTTTAAGGATTACGC-C-
*
2243777 ACCATAAACATAGTCTTCTCATTAGGATAGACACAATTGACGATTTGGTTTCACAAGAAAGGCTT
321 -CCATAAACATAGTCTTCTCATTAGGATAGACACAATTGACGATTTCGTTTCACAAGAAAGGCTT
* *
2243842 CCTTCCTACCAATTTTTGCAAAGTCTAAGTTCGTGCCTCAACTAAGACAA-ACATGAATTCTAGG
385 CCTTCCCACCAATTTTTGCAAAGTCTAAGTCCGTGCCTCAACTAAGACAACA-ATGAATTCTAGG
*
2243906 AATAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCCCATTAAGATAAATGATA
449 AAAAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCCCATTAAGATAAATGATA
* ** * * * * *
2243971 TTTATGGTTTTCTTTTGTTTGAAAATCTTTTCTTTACCCTATTTTCCTTTAAATCAAAGTTCATC
514 CTTATGGTTTTCTTTTGCATGAAAAACTTTTCTTCACCCTACTTTCCTTAAAATCAAAGATCATC
* * * * ** *
2244036 TCTTAAATAAGGCAAGCACTGATTTTCGTAATAGTCTTTATTCTTTTCAGGATTGGCACCATAAA
579 CCTTAAATAAGGCAAGCACTGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGCACCATAAA
** *
2244101 CATAGTCTTCTCATTAAGATAGACGAAATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCGCA
644 CATAGTCTTCTCATTAAGATAGACGAAATTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCA
* *
2244166 CCAATTTTTGCAAAGTCTAAGTCTGTGCCTCAAATGAGTCAAACATGGACTATAGTAATAATATT
709 CCAATTTTTGCAAAGTCTAAGTCTGTGCCTCAAATGAGACAAACATGGACTACAGTAATAATATT
* *
2244231 TATTAATTTTTTGATTAG
774 CATTAATTTTGTGATTAG
* * *
2244249 GCACTATAAACACATTCT-CTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAATTC
1 GCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCACGAAAATA
* * * * *
2244313 TTTTCTTTGCCTTATCTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCT
66 TTTTCTTTGCCCTATTTTCCTTAAAATCAATGTTCATCCCTTAAATAAGGCTAGCATAGATTCT
2244377 CGTAATATTC
Statistics
Matches: 832, Mismatches: 80, Indels: 18
0.89 0.09 0.02
Matches are distributed among these distances:
789 2 0.00
790 119 0.14
791 134 0.16
792 43 0.05
793 96 0.12
794 437 0.53
795 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.37
Consensus pattern (791 bp):
GCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCACGAAAATA
TTTTCTTTGCCCTATTTTCCTTAAAATCAATGTTCATCCCTTAAATAAGGCTAGCATAGATTCTT
CAAACAATCACCGTTCATTTCAAGATTAGGAACCAAAATCACATTCCTTACATAAGGATACTTGA
CATTGACGCTTTGGTGTCACAAGAAAAGGTTTTCTTTCCACTATTTTTGATAGAATGAAAGTTTG
TCCTCAACTAAGACAAACATGAATACTCATGCTAATCCCCATTCTTTTAAGGATTACGCCCCATA
AACATAGTCTTCTCATTAGGATAGACACAATTGACGATTTCGTTTCACAAGAAAGGCTTCCTTCC
CACCAATTTTTGCAAAGTCTAAGTCCGTGCCTCAACTAAGACAACAATGAATTCTAGGAAAAATC
TTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCCCATTAAGATAAATGATACTTATGG
TTTTCTTTTGCATGAAAAACTTTTCTTCACCCTACTTTCCTTAAAATCAAAGATCATCCCTTAAA
TAAGGCAAGCACTGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGCACCATAAACATAGTC
TTCTCATTAAGATAGACGAAATTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTT
TTGCAAAGTCTAAGTCTGTGCCTCAAATGAGACAAACATGGACTACAGTAATAATATTCATTAAT
TTTGTGATTAG
Found at i:2244258 original size:158 final size:158
Alignment explanation
Indices: 2242986--2245720 Score: 695
Period size: 158 Copynumber: 17.3 Consensus size: 158
2242976 ATTACGCCGC
* * * *
2242986 ATAAACATAGTCTTCTCATTAGGATAGA-CACAATTGATGATTT-CGTTTCGCAAGAAAGGCTTT
1 ATAAACACAGTCTTCTCATTAGGATAGATGA-AATTGATGCTTTGC-TTTTGCAAGAAAGGCTTT
* * * * * * * *
2243049 T-TTCCCACCAATTTTTGCAAAGTCTAAGTCCGTGCCTCAATTGAGAC-AACAATGGATTCTAGG
64 TCTTCGCACCAATTTTTGCAAAATCTAAGTTCGTGCCTCAAATAAGGCAAAC-ATGGATTATAGT
* * *
2243112 AAAAATCTTCATTCATTTTGTGATTAGGCACT
128 AATAATCTTTATT-ATTTTATGATTAGGCACT
* * * * * * * **
2243144 ATAAACACATTCTTCTCATTAAGATAAATGATACTT-ATGGTTTTCTTTTGCATGAAAAACTTTT
1 ATAAACACAGTCTTCTCATTAGGATAGATGA-AATTGATGCTTTGCTTTTGCAAGAAAGGCTTTT
* * * * * * * * * *
2243208 CTTCAC-CCTACTTTCCTT--AAAATCAAAGATCATCCCTTAAATAAGGCAATCATTGATTCTCA
65 CTTCGCACC-AATTT--TTGCAAAATCTAAGTTCGTGCCTCAAATAAGGCAAACATGGATTAT-A
** * ** * * *
2243270 -TAGCAGTCTCCATTCTTTTCAAGATT-GGCACC
126 GTAATAATCTTTATTATTTT-ATGATTAGGCACT
* * * * **
2243302 ATAAACATAGTCTTCTTATTAGGATAGACGAAATTGATGCTTTGGTTTCACAAGAAAGGC-TTTC
1 ATAAACACAGTCTTCTCATTAGGATAGATGAAATTGATGCTTTGCTTTTGCAAGAAAGGCTTTTC
* * * * ** * * ***
2243366 TTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTTACCT-GGGACAAATATGTG-TTCCGGTA
66 TTCGCACCAATTTTTGCAAAATCTAAGTTCGTGCCTCAAATAAGG-CAAACATG-GATTATAGTA
* *
2243429 ATAATCTTCATTCATTTTGTGATTAGGCACT
129 ATAATCTTTATT-ATTTTATGATTAGGCACT
* * * * * * * ***
2243460 ATAAACACATTCTCCTCATTAGGATCA-ATTATATTGATGGTTTTCTTTTGCACGAAAATATTTT
1 ATAAACACAGTCTTCTCATTAGGAT-AGATGAAATTGATGCTTTGCTTTTGCAAGAAAGGCTTTT
* * * * * * * * * * **
2243524 CTTTGC-CCTATTTTCCT-TAAAATC-AATGTTCATCCCTTAAATAAGGCTAGCAT-AATTCTTC
65 CTTCGCACCAATTTT--TGCAAAATCTAA-GTTCGTGCCTCAAATAAGGCAAACATGGATTATAG
* * * ** * * * * *
2243585 AAACAGTCTCGATTCATTTCAAGATTGGGAACC
127 TAATAATCTTTATT-ATTTTATGATTAGGCACT
* * * ** * * * **
2243618 A-AAATCGCATTC-CCTTCATTAGGATACTTGACATTGATGCTTTGGTGTCACAAGAAAAGG-TT
1 ATAAA-CACAGTCTTC-TCATTAGGATAGATGAAATTGATGCTTTGCTTTTGCAAG-AAAGGCTT
*** ** ** * * * *
2243680 TTCTTTTTA-GTATTTTTG-ATAGAATGAAAGTTTGT-CTCTCAACTAAGACAAACAT-GAATAC
63 TTCTTCGCACCAATTTTTGCA-A-AATCTAAGTTCGTGC-CTCAAATAAGGCAAACATGGATTA-
** *** * * *
2243741 TCA-TGCTAATCCCCATTCTTTTAAGGATTACGCACT
124 T-AGTAATAATCTTTATTATTTT-ATGATTAGGCACT
* * * * * **
2243777 ACCATAAACATAGTCTTCTCATTAGGATAGA-CACAATTGACGATTTGGTTTCACAAGAAAGGC-
1 ---ATAAACACAGTCTTCTCATTAGGATAGATGA-AATTGATGCTTTGCTTTTGCAAGAAAGGCT
* * * * * *
2243840 TTCCTTC-CTACCAATTTTTGCAAAGTCTAAGTTCGTGCCTCAACTAAGACAAACATGAATTCTA
62 TTTCTTCGC-ACCAATTTTTGCAAAATCTAAGTTCGTGCCTCAAATAAGGCAAACATGGATTATA
* * *
2243904 GGAATAATCTTCATTCATTTTGTGATTAGGCACT
126 GTAATAATCTTTATT-ATTTTATGATTAGGCACT
* * * * * * * * *** **
2243938 ATAAACACATTCTTCCCATTAAGATAAATGATATTTATGGTTTTCTTTTGTTTGAAAATCTTTTC
1 ATAAACACAGTCTTCTCATTAGGATAGATGAAATTGATGCTTTGCTTTTGCAAGAAAGGCTTTTC
** * ** * * * * * *
2244003 TTTAC-CCTATTTTCCT-TTAAATCAAAGTTCAT-CTCTTAAATAAGGCAAGCACT-GATTTTCG
66 TTCGCACCAATTTT--TGCAAAATCTAAGTTCGTGC-CTCAAATAAGGCAAACA-TGGATTATAG
* * * *
2244064 TAATAGTCTTTATTCTTTTCAGGATT-GGCACC
127 TAATAATCTTTATTATTTT-ATGATTAGGCACT
* * * *
2244096 ATAAACATAGTCTTCTCATTAAGATAGACGAAATTGATGCTTTGGTTTTGCAAGAAAGGC-TTTC
1 ATAAACACAGTCTTCTCATTAGGATAGATGAAATTGATGCTTTGCTTTTGCAAGAAAGGCTTTTC
* * * *
2244160 TTCGCACCAATTTTTGCAAAGTCTAAG-TCTGTGCCTCAAATGAGTCAAACATGGACTATAGTAA
66 TTCGCACCAATTTTTGCAAAATCTAAGTTC-GTGCCTCAAATAAGGCAAACATGGATTATAGTAA
* *
2244224 TAATATTTATTAATTTTTTGATTAGGCACT
130 TAATCTTTATT-ATTTTATGATTAGGCACT
* * * * * * **
2244254 ATAAACACATTC-TCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAATTCTTTTC
1 ATAAACACAGTCTTCTCATTAGGATAGATGAAATTGATGCTTTGCTTTTGCAAGAAAGGCTTTTC
* ** * * * * * * * *
2244318 TTTGC-CTTATCTTCCTT--AAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGT
66 TTCGCACCAAT-TT--TTGCAAAATCTAAGTTCGTGCCTCAAATAAGGCAAACATGGATTATAGT
* * * * *
2244380 AATATTCTCTATTCTTTTCAGGATT-GGCACC
128 AATAATCTTTATTATTTT-ATGATTAGGCACT
* * * ** *
2244411 ATAAACATAGTCTTCTCGTTAGGATTGATGAAATTGATGCTTTGCTTTCACAAGAAAGACTTTTC
1 ATAAACACAGTCTTCTCATTAGGATAGATGAAATTGATGCTTTGCTTTTGCAAGAAAGGCTTTTC
* * * * *
2244476 TT-GCCACCAATTTTCGTAAAATCTAAGTTCGTGCCTCAAATGAGTCAAAAATGGATTATAGTAA
66 TTCG-CACCAATTTTTGCAAAATCTAAGTTCGTGCCTCAAATAAGGCAAACATGGATTATAGTAA
* * **
2244540 TAATCTTTATTTATCTTGTGATTAGGGTCT
130 TAATCTTTA-TTATTTTATGATTAGGCACT
* ** * * * * * *
2244570 ATAAACACATTCTTCTTGTTAGGATAAATGATATTGATGGTTTTCTTTTGCCTA-AAAGTCTTTT
1 ATAAACACAGTCTTCTCATTAGGATAGATGAAATTGATGCTTTGCTTTTG-CAAGAAAGGCTTTT
* * * * * * * * * *
2244634 CTTTGC-CCTATTTTCCT-TAAAATC-AATGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCG
65 CTTCGCACCAATTTT--TGCAAAATCTAA-GTTCGTGCCTCAAATAAGGCAAACATGGATTATAG
** * *
2244696 TAATAATCTCCATTCTTTTCCTGATT-GGCACT
127 TAATAATCTTTATTATTTT-ATGATTAGGCACT
* * * * * **
2244728 ATAAACAGAGTCTTCCCATTAGGATAGACGAAATTGTTGCTTTGGTTTCACAAGAAAGGC-TTTC
1 ATAAACACAGTCTTCTCATTAGGATAGATGAAATTGATGCTTTGCTTTTGCAAGAAAGGCTTTTC
* * * * * * * * * *
2244792 TTCCCACTAATTTTTG-----TC-AAGTTTGTGTCTCAACTGAGACAAATATGGATTCTAGGAAT
66 TTCGCACCAATTTTTGCAAAATCTAAGTTCGTGCCTCAAATAAGGCAAACATGGATTATAGTAAT
* *
2244851 AATCTTCATTCATTTTGTGATTAGG-AGCT
131 AATCTTTATT-ATTTTATGATTAGGCA-CT
* * * * * * * **
2244880 ATAAACAC-GTTCTGCTCATTAGGGTAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTT
1 ATAAACACAG-TCTTCTCATTAGGATAGATGAAATTGATGCTTTGCTTTTGCAAGAAAGGCTTTT
* * * * * * * * *
2244944 CTTTGC-CCTATTTTT-CTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGA-ATTGATTCTCG
65 CTTCGCACCAATTTTTGC--AAAATCTAAGTTCGTGCCTCAAATAAGGCAA-ACATGGATTATAG
* * ** * * * * *
2245006 TAACAGTCTCCATTCCTTTCAGGATT-GGGAAT
127 TAATAATCTTTATT-ATTTTATGATTAGGCACT
* * ** * * * ** * *** ** *
2245038 CA-ACAACACATTC-CCTGTGTTAAGATATACGGCATTGATACTTTGGGGTCACAAGAAAAGCTT
1 -ATA-AACACAGTCTTCT-CATTAGGATAGATGAAATTGATGCTTTGCTTTTGCAAGAAAGGCTT
* * * * *
2245101 TTCTT-GCAACC-ATTTTTG-ATAGAATCAAAGTTTGT-CTCTTAACA-AAGACAAACAT-GAAT
63 TTCTTCGC-ACCAATTTTTGCA-A-AATCTAAGTTCGTGC-CTCAA-ATAAGGCAAACATGGATT
** * *** * * * *
2245160 ACTCTTACTAATCCCCATTCTTTTAAGGATTACGCACC
123 A-TAGTAATAATCTTTATTATTTT-ATGATTAGGCACT
* * * ** * * * * *
2245198 ATAAACAAAGCCTTCTCATTAGGATTGACAAAATTGATGTTTTGGTTTCGCAAGAAAGAC-ATTC
1 ATAAACACAGTCTTCTCATTAGGATAGATGAAATTGATGCTTTGCTTTTGCAAGAAAGGCTTTTC
** * ** * * * **
2245262 TT-GCCACCAATTTTTTTGTGAAGTCTAAGTTCACGCCACAAATAAGACGAACACAGATTATAGT
66 TTCG-CACCAA--TTTTTGCAAAATCTAAGTTCGTGCCTCAAATAAGGCAAACATGGATTATAGT
* *
2245326 AGTAATCTTTATTCATTTTGTGATTAGGCACT
128 AATAATCTTTATT-ATTTTATGATTAGGCACT
* * * * * * * * **
2245358 ATAAACACATTCTTCGCATTAGGATAAATGATATCGATGGTTTTCTTTTGCATGAAAATCTTTTC
1 ATAAACACAGTCTTCTCATTAGGATAGATGAAATTGATGCTTTGCTTTTGCAAGAAAGGCTTTTC
* * * * * * * *
2245423 TAT-GC-CCTA-TTTTCCATAAAATC-AATGTTCATCCCTTAAATAAGCCAAGA-ATTGATTCTC
66 T-TCGCACCAATTTTTGC--AAAATCTAA-GTTCGTGCCTCAAATAAGGCAA-ACATGGATTAT-
* * ** * * *
2245483 A-TAACAGTCTCCATTTTTTTAGGATT-GGCACC
125 AGTAATAATCTTTATTATTTTATGATTAGGCACT
* * * **
2245515 ATAAACATAGTCTTCTCATTAGGATAGACGAAATTGATGCTTTGGTTTCACAAGAAAGGC--TTC
1 ATAAACACAGTCTTCTCATTAGGATAGATGAAATTGATGCTTTGCTTTTGCAAGAAAGGCTTTTC
* * ** * * * * * *
2245578 --C-CACCAATTTTGGTAAAGCCTAAGTTCATGCCTCAACA-GAGACAAATACGGATTCTAGTAA
66 TTCGCACCAATTTTTGCAAAATCTAAGTTCGTGCCTCAA-ATAAGGCAAACATGGATTATAGTAA
* *
2245639 GAATCTTCATTCATTTTATGATTAGGCACT
130 TAATCTTTATT-ATTTTATGATTAGGCACT
* * * * * * *
2245669 ATAAACAAATTCTTTTCATTAGGATAAATCATATTGATGCTTTTCTTTTGCA
1 ATAAACACAGTCTTCTCATTAGGATAGATGAAATTGATGCTTTGCTTTTGCA
2245721 TTAAAATCTT
Statistics
Matches: 1826, Mismatches: 605, Indels: 296
0.67 0.22 0.11
Matches are distributed among these distances:
151 44 0.02
152 100 0.05
153 22 0.01
154 49 0.03
155 5 0.00
156 10 0.01
157 235 0.13
158 637 0.35
159 473 0.26
160 112 0.06
161 82 0.04
162 52 0.03
163 5 0.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (158 bp):
ATAAACACAGTCTTCTCATTAGGATAGATGAAATTGATGCTTTGCTTTTGCAAGAAAGGCTTTTC
TTCGCACCAATTTTTGCAAAATCTAAGTTCGTGCCTCAAATAAGGCAAACATGGATTATAGTAAT
AATCTTTATTATTTTATGATTAGGCACT
Found at i:2245405 original size:478 final size:475
Alignment explanation
Indices: 2243279--2245576 Score: 1662
Period size: 478 Copynumber: 4.8 Consensus size: 475
2243269 ATAGCAGTCT
* * * * *
2243279 CCATTCTTTTCAA-GATT-GGCACCATAAACATAGTCTTCTTATTAGGATAGACGAAATTGATGC
1 CCATTCTTTT-AAGGATTACGCACCATAAACAAAGTCTTCTCATTAGGATAGACAAAATTGATGT
* ** * **
2243342 TTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTTACCT
65 TTTGGTTTCACAAGAAAGGCTTTCTTGCCACCAATTTTTGTAAAGTCTAAGTTCACGCCTCAAAT
** * * *
2243407 GGGACAA-ATATGTGTTC-CGGTAATAATCTTCATTCATTTTGTGATTAGGCACTATAAACACAT
130 AAGACAACACA-G-ATTCTAGG-AATAATCTTCATTCATTTTGTGATTAGGCACTATAAACACAT
* * * * *
2243470 TCTCCTCATTAGGATCAATTATATTGATGGTTTTCTTTTGCACGAAAATATTTTCTTTGCCCTAT
192 TCTTCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTAT
* * * * * *
2243535 TTTCCTTAAAATCAATGTTCATCCCTTAAATAAGGCTAGCA-TAATTCTTC-AAACAGTCTCGAT
257 TTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGAATTGATTC-TCGTAACAGTCTCCAT
* * * * *
2243598 TCATTTCAAGATTGGGAACCA-AAATCGCATTC-CCTTCATTAGGATACT-TGACATTGATGCTT
321 TCTTTTCAGGATTGGGAACCATAAA-CACATTCTCCTT-ATTAAGATA-TACGACATTGATGCTT
* ** ** * *
2243660 TGGTGTCACAAGAAAAGGTTTTCTTTTTA-GTATTTTTGATAGAATGAAAGTTTGTCTCTCAACT
383 TGGTGTCACAAGAAAAGCTTTTC-TTGCACCAATTTTTGATAGAATCAAAGTTTGTCTCTCAAAT
* **
2243724 AAGACAAACATGAATACTCATGCTAATCC
447 AAGACAAACATGAATACTCGTAATAATCC
* * *
2243753 CCATTCTTTTAAGGATTACGCACTACCATAAACATAGTCTTCTCATTAGGATAGACACAATTGAC
1 CCATTCTTTTAAGGATTACG--C-ACCATAAACAAAGTCTTCTCATTAGGATAGACAAAATTGAT
* * * **
2243818 GATTTGGTTTCACAAGAAAGGCTTCCTT-CCTACCAATTTTTGCAAAGTCTAAGTTCGTGCCTCA
63 GTTTTGGTTTCACAAGAAAGGCTTTCTTGCC-ACCAATTTTTGTAAAGTCTAAGTTCACGCCTCA
*
2243882 ACTAAGACAA-ACATGAATTCTAGGAATAATCTTCATTCATTTTGTGATTAGGCACTATAAACAC
127 AATAAGACAACACA-G-ATTCTAGGAATAATCTTCATTCATTTTGTGATTAGGCACTATAAACAC
* * * ** *
2243946 ATTCTTCCCATTAAGATAAATGATATTTATGGTTTTCTTTTGTTTGAAAATCTTTTCTTTACCCT
190 ATTCTTCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCT
* * * * * * **
2244011 ATTTTCCTTTAAATCAAAGTTCATCTCTTAAATAAGGCAAGCACTGATTTTCGTAATAGTCTTTA
255 ATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGAATTGATTCTCGTAACAGTCTCCA
* * * * * * *
2244076 TTCTTTTCAGGATT-GGCACCATAAACATAGTCTTCTCATTAAGATAGACGAAATTGATGCTTTG
320 TTCTTTTCAGGATTGGGAACCATAAACACATTCTCCTTATTAAGATATACGACATTGATGCTTTG
* ** * * * *
2244140 GTTTTGCAAGAAAGGC-TTTCTTCGCACCAATTTTTGCA-A-AGTCTAAGTCTGTGC-CTCAAAT
385 GTGTCACAAGAAAAGCTTTTCTT-GCACCAATTTTTG-ATAGAATCAAAGTTTGT-CTCTCAAAT
* * * * **
2244201 GAGTCAAACATGGACTA-TAGTAATAATAT
447 AAGACAAACAT-GAATACTCGTAATAATCC
** * ** * * * * * ** *
2244230 TTATTAATTTT-TTGATTAGGCACTATAAACACATTC-TCTCATTAGGATAAATGATATTGATGG
1 CCATT-CTTTTAAGGATTACGCACCATAAACAAAGTCTTCTCATTAGGATAGACAAAATTGAT-G
* ** * ** * ** * *
2244293 TTTT-CTTTTGCATGAAATTCTTTTCTTTGCCTTATC--TTCCT-TAAAATCAAAGTTCATC-CC
64 TTTTGGTTTCACAAGAAAGGC-TTTC-TTGCC--ACCAATTTTTGTAAAGTCTAAGTTCA-CGCC
* * ** * * * *
2244353 TTAAATAAGGCAAGCATTGATTCTCGTAATATTC-TCTATTC-TTTTCAG-GATT-GGCACCATA
124 TCAAATAAGACAA-CACAGATTCTAGGAATAATCTTC-ATTCATTTT--GTGATTAGGCACTATA
* * * ** * * * ** *
2244414 AACATAGTCTTCTCGTTAGGATTGATGAAATTGATGCTTTGCTTTCACAAGAAAGA-CTTTTC-T
185 AACACATTCTTCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAA-ATCTTTTCTT
* * * * * * * * * * * * *
2244477 TGCCACCAATTTT-CGTAAAATCTAAGTTCGTGCCTCAAATGAGTCAAAAATGGATTATAGTAAT
249 TG-C-CCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGAATTGATTCTCGTAAC
* * * * * * * * * * *
2244541 AATCT---TTATTTATCTTGTGATTAGGG-TCTATAAACACATTCTTCTTGTTAGGATAAATGAT
312 AGTCTCCATTCTTT-TC-AG-GATT-GGGAACCATAAACACATTCTCCTTATTAAGATATACGAC
* ** * ** ** * *** * * *
2244602 ATTGATGGTTTTCTTTTGC-CTAAAAGTCTTTTCTTTGC-CCTATTTTCCTTAAAATCAATGTTC
373 ATTGATGCTTTGGTGTCACAAGAAAAG-CTTTTC-TTGCACCAATTTTTGATAGAATCAAAGTTT
* * * * * * *
2244665 ATCCCTTAAATAAGGCAAGCATTG-ATTCTCGTAATAATCT
436 GTCTCTCAAATAAGACAAACA-TGAATACTCGTAATAATCC
*** * * * * * * *
2244705 CCATTCTTTTCCTGATT-GGCACTATAAACAGAGTCTTCCCATTAGGATAGACGAAATTGTTGCT
1 CCATTCTTTTAAGGATTACGCACCATAAACAAAGTCTTCTCATTAGGATAGACAAAATTGATGTT
* * * * * * *
2244769 TTGGTTTCACAAGAAAGGCTTTCTTCCCACTAATTTTTGTCAAGT-T-TG-T---GTCTCAACTG
66 TTGGTTTCACAAGAAAGGCTTTCTTGCCACCAATTTTTGTAAAGTCTAAGTTCACGCCTCAAATA
* *
2244828 AGACAA-ATATGGATTCTAGGAATAATCTTCATTCATTTTGTGATTAGG-AGCTATAAACACGTT
131 AGACAACACA--GATTCTAGGAATAATCTTCATTCATTTTGTGATTAGGCA-CTATAAACACATT
* *
2244891 CTGCTCATTAGGGTAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATT
193 CTTCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATT
*
2244956 TTTCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGAATTGATTCTCGTAACAGTCTCCATTC
258 TTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGAATTGATTCTCGTAACAGTCTCCATTC
* * * * *
2245021 CTTTCAGGATTGGGAATCA-ACAACACATTC-CCTGTGTTAAGATATACGGCATTGATACTTTGG
323 TTTTCAGGATTGGGAACCATA-AACACATTCTCCT-TATTAAGATATACGACATTGATGCTTTGG
* *
2245084 GGTCACAAGAAAAGCTTTTCTTGCAACC-ATTTTTGATAGAATCAAAGTTTGTCTCTTAACA-AA
386 TGTCACAAGAAAAGCTTTTCTTGC-ACCAATTTTTGATAGAATCAAAGTTTGTCTCTCAA-ATAA
* *
2245147 GACAAACATGAATACTCTTACTAATCC
449 GACAAACATGAATACTCGTAATAATCC
* *
2245174 CCATTCTTTTAAGGATTACGCACCATAAACAAAGCCTTCTCATTAGGATTGACAAAATTGATGTT
1 CCATTCTTTTAAGGATTACGCACCATAAACAAAGTCTTCTCATTAGGATAGACAAAATTGATGTT
* * * * *
2245239 TTGGTTTCGCAAGAAAGACATTCTTGCCACCAATTTTTTTGTGAAGTCTAAGTTCACGCCACAAA
66 TTGGTTTCACAAGAAAGGCTTTCTTGCCACCAA--TTTTTGTAAAGTCTAAGTTCACGCCTCAAA
* * * *
2245304 TAAGACGAACACAGATTATAGTAGTAATCTTTATTCATTTTGTGATTAGGCACTATAAACACATT
129 TAAGAC-AACACAGATTCTAGGAATAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
* * *
2245369 CTTCGCATTAGGATAAATGATATCGATGGTTTTCTTTTGCATGAAAATCTTTTCTATGCCCTATT
193 CTTCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATT
* * * *
2245434 TTCCATAAAATCAATGTTCATCCCTTAAATAAGCCAAGAATTGATTCTCATAACAGTCTCCATT-
258 TTCCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGAATTGATTCTCGTAACAGTCTCCATTC
* * * * * * * * * *
2245498 TTTTTAGGATT-GGCACCATAAACATAGTCTTCTCATTAGGATAGACGAAATTGATGCTTTGGTT
323 TTTTCAGGATTGGGAACCATAAACACATTCTCCTTATTAAGATATACGACATTGATGCTTTGGTG
*
2245562 TCACAAGAAAGGCTT
388 TCACAAGAAAAGCTT
2245577 CCCACCAATT
Statistics
Matches: 1398, Mismatches: 339, Indels: 172
0.73 0.18 0.09
Matches are distributed among these distances:
466 2 0.00
467 1 0.00
468 52 0.04
469 201 0.14
470 83 0.06
471 6 0.00
472 19 0.01
473 146 0.10
474 169 0.12
475 87 0.06
476 56 0.04
477 62 0.04
478 477 0.34
479 35 0.03
480 2 0.00
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (475 bp):
CCATTCTTTTAAGGATTACGCACCATAAACAAAGTCTTCTCATTAGGATAGACAAAATTGATGTT
TTGGTTTCACAAGAAAGGCTTTCTTGCCACCAATTTTTGTAAAGTCTAAGTTCACGCCTCAAATA
AGACAACACAGATTCTAGGAATAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTT
CTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTC
CTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGAATTGATTCTCGTAACAGTCTCCATTCTTT
TCAGGATTGGGAACCATAAACACATTCTCCTTATTAAGATATACGACATTGATGCTTTGGTGTCA
CAAGAAAAGCTTTTCTTGCACCAATTTTTGATAGAATCAAAGTTTGTCTCTCAAATAAGACAAAC
ATGAATACTCGTAATAATCC
Found at i:2245766 original size:311 final size:315
Alignment explanation
Indices: 2245174--2245813 Score: 851
Period size: 311 Copynumber: 2.0 Consensus size: 315
2245164 TTACTAATCC
* * *
2245174 CCATTCTTTTAAGGATTACGCACCATAAACAAAGCCTTCTCATTAGGATTGACAAAATTGATGTT
1 CCATT-TTTTTAGGATTACGCACCATAAACAAAGCCTTCTCATTAGGATAGACAAAATTGATGCT
* * * *
2245239 TTGGTTTCGCAAGAAAGACATTCTTGCCACCAATTTTTTTGTGAAGTCTAAGTTCACGCCACAAA
65 TTGGTTTCACAAGAAAGACATTC-T-CCACCAA-TTTTTGGTAAAGCCTAAGTTCACGCCACAAA
* * * *
2245304 TAAGACGAACACAGATTATAGTAGTAATCTTTATTCATTTTGTGATTAGGCACTATAAACACATT
127 TAAGACAAACACAGATTATAGTAGTAATCTTCATTCATTTTATGATTAGGCACTATAAACAAATT
* *
2245369 CTTCGCATTAGGATAAATGATATCGATGGTTTTCTTTTGCATGAAAATCTTTTCTATGCCCTATT
192 CTTCGCATTAGGATAAATCATATCGATGCTTTTCTTTTGCATGAAAATCTTTTCTATGCCCTATT
* *
2245434 TTCCATAAAATCAATGTTCATCCCTTAAATAAGCCAAGAATTGATTCTCATAACAGTCT
257 TTCCATAAAATCAAAGTTCATCCCTTAAATAAGCCAAGAATTGATTCTCATAACAGCCT
* * * *
2245493 CCATTTTTTTAGGATT-GGCACCATAAACATAGTCTTCTCATTAGGATAGACGAAATTGATGCTT
1 CCATTTTTTTAGGATTACGCACCATAAACAAAGCCTTCTCATTAGGATAGACAAAATTGATGCTT
* * * *
2245557 TGGTTTCACAAGAAAGGC-TTC-CCACCAA-TTTTGGTAAAGCCTAAGTTCATGCCTCAACA-GA
66 TGGTTTCACAAGAAAGACATTCTCCACCAATTTTTGGTAAAGCCTAAGTTCACGCCACAA-ATAA
* * *
2245618 GACAAATACGGATTCTAGTAAG-AATCTTCATTCATTTTATGATTAGGCACTATAAACAAATTCT
130 GACAAACACAGATTATAGT-AGTAATCTTCATTCATTTTATGATTAGGCACTATAAACAAATTCT
** * * *
2245682 TTTCATTAGGATAAATCATATTGATGCTTTTCTTTTGCATTAAAATCTTTTCTTTGCCCTATTTT
194 TCGCATTAGGATAAATCATATCGATGCTTTTCTTTTGCATGAAAATCTTTTCTATGCCCTATTTT
* * * **
2245747 CCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTTGTAACAGCCT
259 CCATAAAATCAAAGTTCATCCCTTAAATAAGCCAAGAATTGATTCTCATAACAGCCT
*
2245804 CCATTCTTTT
1 CCATTTTTTT
2245814 CAAAAATGGG
Statistics
Matches: 282, Mismatches: 37, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
311 196 0.70
312 3 0.01
313 7 0.02
316 3 0.01
317 58 0.21
318 10 0.04
319 5 0.02
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (315 bp):
CCATTTTTTTAGGATTACGCACCATAAACAAAGCCTTCTCATTAGGATAGACAAAATTGATGCTT
TGGTTTCACAAGAAAGACATTCTCCACCAATTTTTGGTAAAGCCTAAGTTCACGCCACAAATAAG
ACAAACACAGATTATAGTAGTAATCTTCATTCATTTTATGATTAGGCACTATAAACAAATTCTTC
GCATTAGGATAAATCATATCGATGCTTTTCTTTTGCATGAAAATCTTTTCTATGCCCTATTTTCC
ATAAAATCAAAGTTCATCCCTTAAATAAGCCAAGAATTGATTCTCATAACAGCCT
Found at i:2245921 original size:788 final size:783
Alignment explanation
Indices: 2244390--2246291 Score: 2426
Period size: 788 Copynumber: 2.4 Consensus size: 783
2244380 AATATTCTCT
* * *
2244390 ATTCTTTTCAGGATT-GGCACCATAAACATAGTCTTCTCGTTAGGATTGATGAAATTGATGCTTT
1 ATTCTTTTAAGGATTACGCACCATAAACATAGTCTTCTCATTAGGATTGATGAAATTGATGCTTT
* * * * *
2244454 GCTTTCACAAGAAAGACTTTTCTTGCCACCAATTTTCGTAAAATCTAAGTTCGTGCCTCAAATGA
66 GGTTTCGCAAGAAAGACTTTTCTTGCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATAA
* * * * **
2244519 GTCAAAAATGGATTATAGTAATAATCTTTATTTATCTTGTGATTAGGGTCTATAAACACATTCTT
131 GACAAACATGGATTATAGTAATAATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTT
** *
2244584 CTTGTTAGGATAAATGATATTGATGGTTTTCTTTTGCCT-AAAAGTCTTTTCTTTGCCCTATTTT
196 C-CATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAA-TCTTTTCTTTGCCCTATTTT
* *
2244648 CCTTAAAATCAATGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAATAATCTCCATTCTT
259 CCTTAAAATCAATGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTT
** * *
2244713 TTCCTGATTGGCACTATAAACAGAGTCTTCCCATTAGGATAGACGAAATTGTTGCTTTGGTTTCA
324 TTCAGGATTGGCACCATAAACAGAGTCTTCCCATTAGGATAGACGAAATTGATGCTTTGGTTTCA
* * ** * * *
2244778 CAAGAAAGGCTTTCTTCCCACTAATTTTTGTCAAGTTTGTGTCTCAACTGAGACAAATATGGATT
389 CAAGAAAGG---TCTTCCCACCAATTTTTGCCAAGTTCATGCCTCAACAGAGACAAATACGGATT
* * ** *
2244843 CTAGGAATAATCTTCATTCATTTTGTGATTAGGAGCTATAAACACGTTCTGCTCATTAGGGTAAA
451 CTAGGAAGAATCTTCATTCATTTTATGATTAGGAGCTATAAACAAATTCTGCTCATTAGGATAAA
* * *
2244908 TGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTTCTTAAAATCAAAGT
516 TCATATTGATGCTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGT
* ** * *
2244973 TCATCCCTTAAATAAGGCAAGAATTGATTCTCGTAACAGTCTCCATTCCTTTCAGGATTGGGAAT
581 TCATCCCTTAAATAAGGCAAGAATTGATTCTCGTAACAGCCTCCATTCCTTTCAAAAATGGGAAC
* * *
2245038 CAACAACACATTCCCTGTGTTAAGATATACGGCATTGATACTTTGGGGTCACAAGAAAAGCTTTT
646 CAACAACACATTCCCTGTATTAAGATATACGACATTGATACCTTGGGGTCACAAGAAAAGCTTTT
* *
2245103 CTTGCAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAACAAAGACAAACATGAATACTCTTAC
711 CTTGCAACCATTTTTGATAGAATCAAAGTTTGTCTCTCAACAAAGACAAACATGAATACTCATAC
2245168 TAATCCCC
776 TAATCCCC
* * ** *
2245176 ATTCTTTTAAGGATTACGCACCATAAACAAAGCCTTCTCATTAGGATTGACAAAATTGATGTTTT
1 ATTCTTTTAAGGATTACGCACCATAAACATAGTCTTCTCATTAGGATTGATGAAATTGATGCTTT
* * ** *
2245241 GGTTTCGCAAGAAAGAC-ATTCTTGCCACCAATTTTTTTGTGAAGTCTAAGTTCACGCCACAAAT
66 GGTTTCGCAAGAAAGACTTTTCTTGCCACCAA--TTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* ** *
2245305 AAGACGAACACAGATTATAGTAGTAATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTC
129 AAGACAAACATGGATTATAGTAATAATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTC
* *
2245370 TTCGCATTAGGATAAATGATATCGATGGTTTTCTTTTGCATGAAAATCTTTTCTATGCCCTATTT
194 TTC-CATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTT
* * * *
2245435 TCCATAAAATCAATGTTCATCCCTTAAATAAGCCAAGAATTGATTCTCATAACAGTCTCCATT-T
258 TCCTTAAAATCAATGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCT
* * *
2245499 TTTTAGGATTGGCACCATAAACATAGTCTTCTCATTAGGATAGACGAAATTGATGCTTTGGTTTC
323 TTTCAGGATTGGCACCATAAACAGAGTCTTCCCATTAGGATAGACGAAATTGATGCTTTGGTTTC
2245564 ACAAGAAAGG-CTTCCCACCAATTTTGGTAAAGCCTAAGTTCATGCCTCAACAGAGACAAATACG
388 ACAAGAAAGGTCTTCCCACCAATTTT--T---GCC-AAGTTCATGCCTCAACAGAGACAAATACG
* **
2245628 GATTCTAGTAAGAATCTTCATTCATTTTATGATTAGGCA-CTATAAACAAATTCTTTTCATTAGG
447 GATTCTAGGAAGAATCTTCATTCATTTTATGATTAGG-AGCTATAAACAAATTCTGCTCATTAGG
*
2245692 ATAAATCATATTGATGCTTTTCTTTTGCATTAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
511 ATAAATCATATTGATGCTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * *
2245757 AAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTTGTAACAGCCTCCATTCTTTTCAAAAATG
576 AAAGTTCATCCCTTAAATAAGGCAAGAATTGATTCTCGTAACAGCCTCCATTCCTTTCAAAAATG
* * * * * **
2245822 GGAACCAA-ATCACTTTCCCT-TCATTAGGATACT-TGACATTGA-AGCCTTGGTGTTGCAAGAA
641 GGAACCAACAACACATTCCCTGT-ATTAAGATA-TACGACATTGATA-CCTTGGGGTCACAAGAA
* * * * * * *
2245883 AAGGTTTTTTTTC-CCCTGTTTTTGATAGAATTAAAGTTTGTCTCTCAACTAAGACAAACATGAA
703 AAGCTTTTCTTGCAACC-ATTTTTGATAGAATCAAAGTTTGTCTCTCAACAAAGACAAACATGAA
2245947 TACTCATACTAATCCCC
767 TACTCATACTAATCCCC
* * * *
2245964 ATCCTTTTAAGGATTACGCACCATAAACATAGTTTTCTCTTTAGGATAGATGAAATTGATGCTTT
1 ATTCTTTTAAGGATTACGCACCATAAACATAGTCTTCTCATTAGGATTGATGAAATTGATGCTTT
* * * * * * * * *
2246029 GGATTCGCAAGAAGGGCTTTTCTT-CCTACCAATTTTTGCAAGGTCTAAATTCGTGCCTCCATTT
66 GGTTTCGCAAGAAAGACTTTTCTTGCC-ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATA
* * * ** *
2246093 AGACAAACATGGATTCTAGAAATAATCTTCATTCATTTTGTGATTTTGCGCTATAAACACATT-T
130 AGACAAACATGGATTATAGTAATAATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCT
* * *
2246157 TCCTTAATAGGATAAATGATATTGATGGTTTTCTCTTGCTTGAAAATCTTTTCTTTGCCCTATTT
195 TCC--ATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTT
* * * * * * *
2246222 TCCTTAAAATCAAAGTTCATGCCTTAACTTAGGCAAGCATTGATTCTTGTAACAGTCTCTATTCC
258 TCCTTAAAATCAATGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCT
2246287 TTTCA
323 TTTCA
2246292 AGCTTGAGAA
Statistics
Matches: 953, Mismatches: 143, Indels: 38
0.84 0.13 0.03
Matches are distributed among these distances:
783 14 0.01
785 2 0.00
786 30 0.03
787 313 0.33
788 374 0.39
789 219 0.23
790 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.37
Consensus pattern (783 bp):
ATTCTTTTAAGGATTACGCACCATAAACATAGTCTTCTCATTAGGATTGATGAAATTGATGCTTT
GGTTTCGCAAGAAAGACTTTTCTTGCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATAA
GACAAACATGGATTATAGTAATAATCTTTATTCATTTTGTGATTAGGCACTATAAACACATTCTT
CCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCC
TTAAAATCAATGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTT
CAGGATTGGCACCATAAACAGAGTCTTCCCATTAGGATAGACGAAATTGATGCTTTGGTTTCACA
AGAAAGGTCTTCCCACCAATTTTTGCCAAGTTCATGCCTCAACAGAGACAAATACGGATTCTAGG
AAGAATCTTCATTCATTTTATGATTAGGAGCTATAAACAAATTCTGCTCATTAGGATAAATCATA
TTGATGCTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC
CCTTAAATAAGGCAAGAATTGATTCTCGTAACAGCCTCCATTCCTTTCAAAAATGGGAACCAACA
ACACATTCCCTGTATTAAGATATACGACATTGATACCTTGGGGTCACAAGAAAAGCTTTTCTTGC
AACCATTTTTGATAGAATCAAAGTTTGTCTCTCAACAAAGACAAACATGAATACTCATACTAATC
CCC
Found at i:2246528 original size:476 final size:471
Alignment explanation
Indices: 2245511--2246767 Score: 1513
Period size: 476 Copynumber: 2.6 Consensus size: 471
2245501 TTAGGATTGG
* **
2245511 CACCATAAACATAGTCTTCTCATTAGGATAGACGAAATTGATGCTTTGGTTTCACAAGAAAGGCT
1 CACCATAAACATAGTCTTCT-TTTAGGATAGACGAAATTGATGCTTTGGTTTCACAAGAAAGTTT
* * * *
2245576 TC--CCACCAATTTTGGTAAAGCCTAAGTTCATGCCTCAACA-GAGACAAATACGGATTCTAGTA
65 TCTTCCACCAATTTTCGTAAAGTCTAAGTTCATGCCTCAA-ATGAGACAAACATGGATTCTAGTA
* * * * * *
2245638 AGAATCTTCATTCATTTTATGATTAGGCACTATAAACAAATTCTT-TTCATTAGGATAAATCATA
129 ATAATCTTCATTCATTTTGTGATTACGCGCTATAAACACATTCTTCTT-ATTAGGATAAATAATA
*
2245702 TTGATGCTTTTCTTTTGCATTAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC
193 TTGATGGTTTTCTTTTGC-TTAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC
* * * *
2245767 CCTTAAATAAGGCAAGCATTGATTCTTGTAACAGCCTCCATTCTTTTCAAAAATGGGAACCAAAT
257 CCTTAAATAAGGCAAGCATTGATTCTTGTAACAGTCTCCATTCCTTTCAAAAATGAGAACCAAAA
* * * * * ** * *
2245832 CACTTTCCCTTCATTAGGATACTTGACATTGAAGCCTTGGTGTTGCAAGAAAAGGTTTTTTTTCC
322 CACATTCCCTTCATGAAGATACATGACATTGAAGCCTTGGGGACGCAAGAAAAGGCTTTTCTTCC
** * * *
2245897 CCTGTTTTTGATAGAATTAAAGTTTGTCTCTCAACTAAGACAAACATGAATACTCATACTAATCC
387 AATGTTTTTGATAGAATCAAAGTTTGCCTCTCAACTAAGACAAACATGAATACTCACACTAATCC
*
2245962 CCATCCTTTTAAGGATTACG
452 CCATCCTTTTAAGGATTACA
* * * * *
2245982 CACCATAAACATAGTTTTCTCTTTAGGATAGATGAAATTGATGCTTTGGATTCGCAAGAAGGGCT
1 CACCATAAACATAGTCTTCT-TTTAGGATAGACGAAATTGATGCTTTGGTTTCACAAGAA-AG-T
* * * * * * * *
2246047 TTTCTTCCTACCAATTTTTGCAAGGTCTAAATTCGTGCCTCCATTTAGACAAACATGGATTCTAG
63 TTTCTTCC-ACCAATTTTCGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAG
* ** * *
2246112 AAATAATCTTCATTCATTTTGTGATTTTGCGCTATAAACACATT-TTCCTTAATAGGATAAATGA
127 TAATAATCTTCATTCATTTTGTGATTACGCGCTATAAACACATTCTT-CTTATTAGGATAAATAA
*
2246176 TATTGATGGTTTTCTCTTGCTTGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCA
191 TATTGATGGTTTTCTTTTGCTT-AAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCA
* * * * ***
2246241 TGCCTTAACTTAGGCAAGCATTGATTCTTGTAACAGTCTCTATTCCTTTCAAGCTTGAGAACCAA
255 TCCCTTAAATAAGGCAAGCATTGATTCTTGTAACAGTCTCCATTCCTTTCAAAAATGAGAACC-A
* * * *
2246306 AAACACATTCCCTTCATGAAGATACATGACATTTATGCTTTGGGGACGCAGGAAAA-GCTTTTCT
319 AAACACATTCCCTTCATGAAGATACATGACATTGAAGCCTTGGGGACGCAAGAAAAGGCTTTTCT
* * * *
2246370 TGCAATAGTTTTTGATAGAATCAAGGTTTGCCTCTTAACTCAGACAAACATGAATACTCACACTA
384 TCCAAT-GTTTTTGATAGAATCAAAGTTTGCCTCTCAACTAAGACAAACATGAATACTCACACTA
* * *
2246435 GTCCCTATTCTTTTAAGGATTACA
448 ATCCCCATCCTTTTAAGGATTACA
* * *
2246459 CACCATAAACATAGTCTTCTTGTTGGGATTGACGAAATTGATGCTTTGCTTTCACAAGAAAGATT
1 CACCATAAACATAGTCTTCTT-TTAGGATAGACGAAATTGATGCTTTGGTTTCACAAGAAAG-TT
* * *
2246524 TTCTTGCCACCAATTTTCGTAAAATCTAAGTTCATGCCTCAAATGAGTCAAACATGGATTATAGT
64 TTCTT-CCACCAATTTTCGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGT
* * *
2246589 AATAATCTTTATTTATTTTGTGATTACG-GTCTATAAACACATTCTTCTTGTTAGGATAAATAAT
128 AATAATCTTCATTCATTTTGTGATTACGCG-CTATAAACACATTCTTCTTATTAGGATAAATAAT
* * *
2246653 ATTGATGGTTTTCTTTTGCCTCAAAATCTTTTCTTTGTCCTATTTTCCTTAAAATCAATGTTCAT
192 ATTGATGGTTTTCTTTTG-CTTAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
* * * * *
2246718 CCCTTAAATAAAGG-AAGCATTTATTCTCGTAATAGTCTTCATTCTTTTCA
256 CCCTTAAAT-AAGGCAAGCATTGATTCTTGTAACAGTCTCCATTCCTTTCA
2246768 GGATTGGCAC
Statistics
Matches: 661, Mismatches: 108, Indels: 29
0.83 0.14 0.04
Matches are distributed among these distances:
471 55 0.08
472 1 0.00
473 3 0.00
475 7 0.01
476 416 0.63
477 179 0.27
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (471 bp):
CACCATAAACATAGTCTTCTTTTAGGATAGACGAAATTGATGCTTTGGTTTCACAAGAAAGTTTT
CTTCCACCAATTTTCGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAAT
AATCTTCATTCATTTTGTGATTACGCGCTATAAACACATTCTTCTTATTAGGATAAATAATATTG
ATGGTTTTCTTTTGCTTAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTT
AAATAAGGCAAGCATTGATTCTTGTAACAGTCTCCATTCCTTTCAAAAATGAGAACCAAAACACA
TTCCCTTCATGAAGATACATGACATTGAAGCCTTGGGGACGCAAGAAAAGGCTTTTCTTCCAATG
TTTTTGATAGAATCAAAGTTTGCCTCTCAACTAAGACAAACATGAATACTCACACTAATCCCCAT
CCTTTTAAGGATTACA
Found at i:2248553 original size:12 final size:11
Alignment explanation
Indices: 2248531--2248606 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
2248521 AGAGAAAGAA
*
2248531 GAGAGAGGAGG
1 GAGATAGGAGG
2248542 GATGATAGGAGG
1 GA-GATAGGAGG
*
2248554 AGAGACAGGA--
1 -GAGATAGGAGG
*
2248564 GAGATAGTA--
1 GAGATAGGAGG
2248573 GAGATAGGAGG
1 GAGATAGGAGG
2248584 GATGATAGGAGG
1 GA-GATAGGAGG
*
2248596 AGAGACAGGAG
1 -GAGATAGGAG
2248607 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:2248563 original size:24 final size:24
Alignment explanation
Indices: 2248530--2248615 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
2248520 AAGAGAAAGA
*
2248530 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
2248554 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
2248572 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
2248596 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
2248616 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:2248582 original size:42 final size:42
Alignment explanation
Indices: 2248521--2248639 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
2248511 TAGCCCTCAA
* *
2248521 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
2248563 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
2248605 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
2248640 GAGAGAAGAA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.43, C:0.03, G:0.46, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:2254768 original size:158 final size:158
Alignment explanation
Indices: 2254116--2260452 Score: 671
Period size: 158 Copynumber: 40.0 Consensus size: 158
2254106 GTGATAAGGG
* * * * * *
2254116 ACTATAAACACATTCTTCTCATTAGGATAAATTATGTTGATGGTTTTCTTTTTCAAGAAAA-CTT
1 ACTATAAACAAAATCTTCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTT
* * * *
2254180 TTCTTTGCCCTATTTTTCGTAAAATCAAAGTTCAACCCTTAAATAAGGCAAGCATTGATTCTCGT
66 TTCTTTGCCCTATTTTTCGTAAAATC-AAGTTCATCCCTTAAATAAGACAAGTATTGATTCTAGT
* * *
2254245 AACAGTCTCCTTTCTTTTCAGGATTAGGA
130 AACAGTCTCCATTCTTTTTAGGATTAGGC
* * * * * * * * **** ** * *
2254274 ACCAAAAACATATTC-TCTTCATTAGGATACACGACATTGATGCTTTGGGGTCACAAGAAAAGCT
1 ACTATAAACAAAATCTTC-TCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCT
* * * **
2254338 TTTC-TTGCAACC-ATTTTT-GATAGAACCAAAGTTTC-TCTCTTAAGA-AAGACAAACA-TGAA
65 TTTCTTTGC--CCTATTTTTCG-TAAAATC-AAG-TTCATCCCTTAA-ATAAGACAAGTATTG-A
* * * * * * *
2254397 TACT-CTTACTAATCCCCATTCTTTTAAGGATTACGC
123 TTCTAGTAAC-AGTCTCCATTCTTTTTAGGATTAGGC
* * ** ** * ** * * *
2254433 ACCATAAACAAAGTCTTCTCATTAGGATTGACAAAATTGATGGTTTGGTTTCGTAAGAAAGA-C-
1 ACTATAAACAAAATCTTCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAA-ATCT
* * * * ** * ** *
2254496 ATTC-TTGCCACCAATTTTTTTGTAAAGTCTAAGTTCA-CGCCACAAATAAGACGAA-CACAGAA
65 TTTCTTTG-C-CCTA-TTTTTCGTAAAATC-AAGTTCATC-CCTTAAATAAGAC-AAGTATTGAT
** ** * * ** *
2254558 AATAGTAGTAATGTTTATTCATTTT-GTGATTAGGC
124 TCTAGTAACAGTCTCCATTCTTTTTAG-GATTAGGC
* * *
2254593 ACTATAAACACAATCTTCACATTAGGATAAATGATATCGATGGTTTTCTTTTGCATGAAAATCTT
1 ACTATAAACAAAATCTTCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTT
* * * *
2254658 TTCTTTGCCTTATTTTTCGTAAAATCAATGTTCATCCCTTAAATAAGCCAAGCATTGATTCTCGT
66 TTCTTTGCCCTATTTTTCGTAAAATCAA-GTTCATCCCTTAAATAAGACAAGTATTGATTCTAGT
*
2254723 AACAGTCTCCATTTTTTTTAGGATT-GGC
130 AACAGTCTCCATTCTTTTTAGGATTAGGC
* * * * * * * ** ** * **
2254751 ACCATAAACATAGTCTTCTCATTAGGATAGACGAAATTGATGCTTTGGTTTCACAAGAAAGGC-T
1 ACTATAAACAAAATCTTCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTT
** * * ** * * * * * *
2254815 TTCTTCCCACCAATTTTT-GTGAAGCCTAAGTTCATGCCTCAACTGAGACAAATATGGATTCTAG
66 TTCTTTGC-CCTATTTTTCGTAAAATC-AAGTTCATCCCTTAAATAAGACAAGTATTGATTCTAG
* * * * * *
2254879 TTAGAATCTTCATTCATTTTATGATTAGGC
129 TAACAGTCTCCATTCTTTTTAGGATTAGGC
* * * *
2254909 ACTATAAACAAATTCTTTTCATTAGGATAAATGATATTGAT-GTTTTTTTTTGCATTAAAATCTT
1 ACTATAAACAAAATCTTCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTT
* * * * *
2254973 TTCTTTGCCCTATTTTCCTTAAAATTAAAGTTAATCCCTTAAATAAGGCAAGTATTGATTCTAGT
66 TTCTTTGCCCTATTTTTCGTAAAA-TCAAGTTCATCCCTTAAATAAGACAAGTATTGATTCTAGT
* * * * * * *
2255038 AATAGCCTCCATTCTTTTCAAGAATGGGA
130 AACAGTCTCCATTCTTTTTAGGATTAGGC
* *** * * ** * * ** ** * * * *
2255067 ACCA-AAATCACTTTC-CCTTCACTAGGATACTTGACATTGAAGCCTTGGTGTCGCAAGAAAA-G
1 ACTATAAA-CAAAATCTTC-TCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATC
* * * * ** * * * ** *
2255129 GTTT-TTTCCCCTATTTTT-GATAGAATTAAAGTTTGTCTCTCAACTAAGACAAACA-TGAATAC
64 TTTTCTTTGCCCTATTTTTCG-TA-AAATCAAGTTCATCCCTTAAATAAGACAAGTATTG-ATTC
* * * *
2255191 TCA-T-ACTAATCCCCATTCTTTTAAGGATTACGC
126 T-AGTAAC-AGTCTCCATTCTTTTTAGGATTAGGC
* * * * * * * *** * * **
2255224 ACCATAAACATAGTCTTCTCTTTAGGATAGATGAAATTGATGCTTTGGATTCGCAAGAAAGGC-T
1 ACTATAAACAAAATCTTCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTT
* * * ** * * * * ** * * * *
2255288 TTCTTCCT-ACCAATTTTT-GCAAGGTCTAAATCCGTGCCTCCACTTAGACAA-CATGGATTCTA
66 TTCTT--TGCCCTATTTTTCGTAAAATC-AAGTTCATCCCTTAAATAAGACAAGTATTGATTCTA
** * * * **
2255350 CAAATAATCAT-CATTCATTTT-GTGATTTTGC
128 GTAACAGTC-TCCATTCTTTTTAG-GATTAGGC
* * * * * *
2255381 GCTATAAAC-ACATTTTCCTTAATAGGATAAATGATATTGATGGTTTTCTTTTGCTTGAAAATCT
1 ACTATAAACAAAATCTT-CTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCT
* * * * * * * *
2255445 TTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATGCCTTAAGTAAGGCAAGCATTAATTCTTG
65 TTTCTTTGCCCTATTTTTCGTAAAATC-AAGTTCATCCCTTAAATAAGACAAGTATTGATTCTAG
* * * * *
2255510 TAACAGTCTCTATTCTTTTCAAGCTT-GAGA
129 TAACAGTCTCCATTCTTTTTAGGATTAG-GC
* * ** * * * * * * * * ** ***** * *
2255540 ACCAAAAACGCATTC-CCTTCATGAAGATACACGACATTTATACTTTGGGGATGCAAGAAAAGCT
1 ACTATAAACAAAATCTTC-TCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCT
** * * * **
2255604 TTTC-TTGCAATAGTTTTT-GATAGAACCAAGGTT--TGCCTCTTAACTAAGACAAACA-TGAAT
65 TTTCTTTGCCCTA-TTTTTCG-TAAAATCAA-GTTCAT-CC-CTTAAATAAGACAAGTATTG-AT
* * * * *
2255664 ACTCA--CACTAATC-CCTATTCTTTTAAGGATTATGC
124 TCT-AGTAAC-AGTCTCC-ATTCTTTTTAGGATTAGGC
* * * * * ** * * * * * *
2255699 ACCATAAACATAGTCTTCTCGTTGGGATTGACGAAATTGATGCTTTGCTTTTACAAGAAAGA--T
1 ACTATAAACAAAATCTTCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAA-ATCT
* * * * * * ** * **
2255762 TTTC-TTGCCACCAATTTTCGTAATATCTAAGTTCA-CGCCTCAAATGAGTCAAACA-AGCATGA
65 TTTCTTTGCC-CTATTTTTCGTAAAATC-AAGTTCATC-CCTTAAATAAGACAAGTATTG-ATTC
* * ** *
2255824 TAGTAATAATCTTTATT-TATTTT-GTGATTAGGG
126 TAGTAACAGTCTCCATTCT-TTTTAG-GATTAGGC
* * * ** *
2255857 TCTATAAACACATTCTTCTTGTTAGGATAAATGATATTGATGGTTTTCTTTTGCCTGAAAATCTT
1 ACTATAAACAAAATCTTCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTT
* * * * * ** * *
2255922 TTCTTTGCCTTATTTTCCCTCAAATCAATGTTCATCCCTTAAGTAAGGGAAGCATTGATTCTCGT
66 TTCTTTGCCCTATTTTTCGTAAAATCAA-GTTCATCCCTTAAATAAGACAAGTATTGATTCTAGT
* *
2255987 AATAGTCTCCATTCTTTTCAGGATT-GGC
130 AACAGTCTCCATTCTTTTTAGGATTAGGC
* * * * * * * * ** * *
2256015 ACCATAAGCATAGTCTTCCCATTAGGATAGACT-AAATTGATGCTTTGT-TTTCACAAGAAAAGC
1 ACTATAAACAAAATCTTCTCATTAGGATA-AATGATATTGATGGTTT-TCTTTTGCATGAAAATC
* ** * * * ** * * * *
2256078 -TTTCTTCCTG-CTTA-TTTTAATCAACTCTAAGTTCGTTTCTTAATTGAGACAAATATGGATTC
64 TTTTCTT--TGCCCTATTTTTCGTAAAATC-AAGTTCATCCCTTAAATAAGACAAGTATTGATTC
* * * * * * *
2256140 TTGGAATAATCTTCATTCATTTT-GTGATTA-TC
126 TAGTAACAGTCTCCATTCTTTTTAG-GATTAGGC
* * *
2256172 AGCTATAAACACATTCTGCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCT
1 A-CTATAAACAAAATCTTCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCT
* * * * * * * *
2256237 TTTCTTTGTCGTATTTTCCTTAAAATCAAAGTTAATCCCTTAAAAAAGACAAGCATTGATTCTTG
65 TTTCTTTGCCCTATTTTTCGTAAAATC-AAGTTCATCCCTTAAATAAGACAAGTATTGATTCTAG
* * * *
2256302 TAACAGTCTCCATTCTTTTCAAGATTGGGA
129 TAACAGTCTCCATTCTTTTTAGGATTAGGC
* ** * * * ** * * * ** * * * **
2256332 ACCA-AAATCTCATTC-CCTTCGTTAGGATACTTGACATTGACGCTTTAGTGTCGCAAGAAAAGG
1 ACTATAAA-CAAAATCTTC-TCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATC
* ** ** * * * ** * ** *
2256395 TTTTCTTT-CCATTATTTTTTATGGAATAAAAGTAT-GTCTCGCAACTAAGACAAACA-TGAATA
64 TTTTCTTTGCC-CTATTTTTCGTAAAAT-CAAGT-TCATCCCTTAAATAAGACAAGTATTG-ATT
* * * * *
2256457 CTCA-T-ACTAATCCCCATTCTTTTCAAGATTACGC
125 CT-AGTAAC-AGTCTCCATTCTTTTTAGGATTAGGC
* * * * * ** * * *** * * **
2256491 ACCATAAACATAGTCTTCTCTTTAGGATAGACAAAATTGACGGTTTGGATTCGCAAGAAAGGC-T
1 ACTATAAACAAAATCTTCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTT
* ** * *** * * * ** *
2256555 TT-TTT-CCTACCACTCCTT-GCACGGTCCAAGTTCGTGCCTTAATTAAGACAAACATGGATTCT
66 TTCTTTGCC--CTA-TTTTTCGTAAAAT-CAAGTTCATCCCTTAAATAAGACAAGTATTGATTCT
** * * *
2256617 AGTAGTAATCTTCATTCTTTTT-GTGATTAGGA
127 AGTAACAGTCTCCATTCTTTTTAG-GATTAGGC
* * * * *
2256649 ACTATAAACACATTCTTCTCATTAGGATAAATTATGTTGATGGTTTTCTTTTTCATGAAAA-CTT
1 ACTATAAACAAAATCTTCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTT
* * *
2256713 TTCTTTGCCCTATTTTTCGTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGT
66 TTCTTTGCCCTATTTTTCGTAAAATC-AAGTTCATCCCTTAAATAAGACAAGTATTGATTCTAGT
* * * *
2256778 AACAGTCTCCTTTCTTTTCAGGATTAAGA
130 AACAGTCTCCATTCTTTTTAGGATTAGGC
* * * * * ** * * * ****
2256807 ACCGA-AAACACATTC-CCTTCATTAGGATACACAACATAGAT-GCTTTGGGGT-CATAAGAAAA
1 A-CTATAAACAAAATCTTC-TCATTAGGATAAATGATATTGATGGTTTTCTTTTGCAT--GAAAA
* * * ** * **
2256868 GCTTTTC-TTGCAACC-ATTTTT-GATAGAACCAAAGTTTC-TGTCTTAACTAAGACAAACA-TG
62 TCTTTTCTTTGC--CCTATTTTTCG-TAAAATC-AAG-TTCATCCCTTAAATAAGACAAGTATTG
* * * * *
2256928 AATACTCA--CACTAATC-CCTATTCTTTTAAGGATTACGC
122 -ATTCT-AGTAAC-AGTCTCC-ATTCTTTTTAGGATTAGGC
* * * * ** * * * * ** *
2256966 ACCATAAACATAGTCTTCTCGTTAGGATTGACGAAATTGATGCTTTGCTTTCACAAGAAAGA--T
1 ACTATAAACAAAATCTTCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAA-ATCT
* * * * * * * * ** * *
2257029 TTTC-TTGCCACCAATTTTCGTAAAATCTATGTTCGTACCTCAAATGAGTCAAACATGGATTATA
65 TTTCTTTGCC-CTATTTTTCGTAAAATC-AAGTTCATCCCTTAAATAAGACAAGTATTGATTCTA
* * **
2257093 GTAATAATCTTTATT-TATTTT-GTGATTACGG-
128 GTAACAGTCTCCATTCT-TTTTAG-GATTA-GGC
* * * ** *
2257124 TCTATAAACACATTCTTCTTGTTAGGATAAATGATATCGATGGTTTTCTTTTGCATGAAAATCTT
1 ACTATAAACAAAATCTTCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTT
* ** * *
2257189 TTCTTTGCCTTATTTTTCGTAAAATCAATGTTCATCCCTTAAATAAGGGAAGCATTGATTCTCGT
66 TTCTTTGCCCTATTTTTCGTAAAATCAA-GTTCATCCCTTAAATAAGACAAGTATTGATTCTAGT
* *
2257254 AATAGTCTCCATTCTTTTCAGGATT-GGC
130 AACAGTCTCCATTCTTTTTAGGATTAGGC
* * * * * * * * ** *
2257282 ACCATAAGCATAGTCTTCCCATTAGGATAGACT-AAATTGAT-GCTTTAGTTT-CA-AAAGAATG
1 ACTATAAACAAAATCTTCTCATTAGGATA-AATGATATTGATGGTTTTCTTTTGCATGAA-AAT-
* * * * ** * * * *
2257343 GC-TTTC-TTCCCACTAATTTTT-GTCAACTCTAAGTTCGTGTCTCAACA-GAGACAAATATGGA
63 -CTTTTCTTTGCC-CT-ATTTTTCGTAAAATC-AAGTTCATCCCTTAA-ATAAGACAAGTATTGA
* ** * * * *
2257404 TTCTAGGAGTAATCTTCATTCATTTT-GTGATTA-TC
123 TTCTAGTAACAGTCTCCATTCTTTTTAG-GATTAGGC
*** * * * *
2257439 AGCTATAAACACGTTCTGCTCGTTAGGATAAATGATATTGACGGTTTTCGTTTGCATGAAAATCT
1 A-CTATAAACAAAATCTTCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCT
* * * * * * *
2257504 TTTCTTTGCCCTATTTTCCTTAAAATCAAAGATAATCCCTTAAAAAAGACAAGCATTGATTCTTG
65 TTTCTTTGCCCTATTTTTCGTAAAATC-AAGTTCATCCCTTAAATAAGACAAGTATTGATTCTAG
* * * * * ** *
2257569 TAATAGTGTTCATTCTTTTCAAGATCGGGA
129 TAACAGTCTCCATTCTTTTTAGGATTAGGC
* ** * * * ** * * * * ** *** * **
2257599 ACCA-AAATCTCATTC-CCTTCGTTAGGATAGTTGACAATGACGCTTTAGTGACGCAAGAAAAGG
1 ACTATAAA-CAAAATCTTC-TCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATC
** * ** * ** * * * *
2257662 TTTTCTTT-CCCTTATTTTT-GATGGAATGAAAGTTTGTCTCGCAACTAAAACAAATA-TGAATA
64 TTTTCTTTGCCC-TATTTTTCG-TAAAAT-CAAGTTCATCCCTTAAATAAGACAAGTATTG-ATT
* * *
2257724 CTCA-T-ACTAATC-CCAATTCTTTTCAGGATTACGC
125 CT-AGTAAC-AGTCTCC-ATTCTTTTTAGGATTAGGC
* * * * * * * *** * **
2257758 ACCATAAACATAGTCTTCTCTTTAGGATAGAA-AAAATTGATGCTTTGGATTCGCAAT-AAAGGC
1 ACTATAAACAAAATCTTCTCATTAGGATA-AATGATATTGATGGTTTTCTTTTGC-ATGAAAATC
* * * * ** * * * * * ** *
2257821 TTTT-TTCCT-ACCAATCTTT-GCAAGGTCCAAGTTCGTGCCTCAATTGAGACAAACATGGATTC
64 TTTTCTT--TGCCCTATTTTTCGTAAAAT-CAAGTTCATCCCTTAAATAAGACAAGTATTGATTC
** * *
2257883 TAGTAGTAATCTTCATTCTTTTT-GTGATTAGGC
126 TAGTAACAGTCTCCATTCTTTTTAG-GATTAGGC
* * * * *
2257916 ACTATAAACACATTCTTCTCATTAGGATAAATTATGTTGATGGTTTTCTTTTTCATGAAAA-CTT
1 ACTATAAACAAAATCTTCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTT
* * * *
2257980 TTCCTTGCCCTATTTTTCGTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGT
66 TTCTTTGCCCTATTTTTCGTAAAATC-AAGTTCATCCCTTAAATAAGACAAGTATTGATTCTAGT
* * * *
2258045 AACAATCTCCTTTCTTTTCAGGATTAGGA
130 AACAGTCTCCATTCTTTTTAGGATTAGGC
* * * * * * * * * **** ** * *
2258074 ACCAAAAACACATTC-CCTTCATTAGGATACACGACATTGATGCTTTGGGGTCACAAGAAAAGCT
1 ACTATAAACAAAATCTTC-TCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCT
* * * * * **
2258138 TTTC-TTGCAACC-ATTGTT-GATAGAACCAAAGTTTC-TCTCTTAACTAAGACAAACA-TGAAT
65 TTTCTTTGC--CCTATTTTTCG-TAAAATC-AAG-TTCATCCCTTAAATAAGACAAGTATTG-AT
* * * * *
2258198 ACTCA--CACTAATC-CCTATTCTTTTAAGGATTACGC
124 TCT-AGTAAC-AGTCTCC-ATTCTTTTTAGGATTAGGC
* * * * ** * * * * ** *
2258233 ACCATAAACATAGTCTTCTCGTTAGGATTGACGAAATTGATGCTTTGCTTTCACAAGAAAGA--T
1 ACTATAAACAAAATCTTCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAA-ATCT
* * * * * * * * * ** * *
2258296 TTTC-TTACCACCAATTTTCGTAAAATCTATGTTCGTGCCTCAAATGAGTCAAACATGGATTATA
65 TTTCTTTGCC-CTATTTTTCGTAAAATC-AAGTTCATCCCTTAAATAAGACAAGTATTGATTCTA
* * **
2258360 GTAATAATCTTTATT-TATTTT-GTGATTACGG-
128 GTAACAGTCTCCATTCT-TTTTAG-GATTA-GGC
* * * ** * *
2258391 TCTATAAACACATTCTTCTTGTTTGGATAAATGATATTGATGGTTTTCTTTTGCCTGAAAATCTT
1 ACTATAAACAAAATCTTCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTT
* ** * *
2258456 TTCTTTGCCCTA-TTTTCTTTAAAATCAATGTTCATCCCTTAAATAAGGGAAGGATTGATTCTCG
66 TTCTTTGCCCTATTTTTC-GTAAAATCAA-GTTCATCCCTTAAATAAGACAAGTATTGATTCTAG
* * *
2258520 TAATAGTCTCCATTCTTTTCAGGACT-GGC
129 TAACAGTCTCCATTCTTTTTAGGATTAGGC
* * * * * * * * * ** *
2258549 ACCATAAGCATAGTCTTCCCTTTAGGATAGACT-AAATTGAT-GCTTTGGTTT-CA-AAAGAATG
1 ACTATAAACAAAATCTTCTCATTAGGATA-AATGATATTGATGGTTTTCTTTTGCATGAA-AAT-
* * * * * ** * * * *
2258610 GC-TTTC-TTCCCACTAATCTTT-GTCAACTCTAAGTTCGTGTCTCAACA-GAGACAAATATGGA
63 -CTTTTCTTTGCC-CT-ATTTTTCGTAAAATC-AAGTTCATCCCTTAA-ATAAGACAAGTATTGA
* ** * * * *
2258671 TTCTAGGAGTAATCTTCATTCATTTT-GTGATTA-TC
123 TTCTAGTAACAGTCTCCATTCTTTTTAG-GATTAGGC
*** * *
2258706 AGCTATAAACACGTTCTGCTCATTAGGATAAATGATATTCATGGTTTTCTTTTGCATGAAAA-CT
1 A-CTATAAACAAAATCTTCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCT
* * * * *
2258770 TTTCTTTGCCCTATTTTTCGTAAGATCAAAGTTCATCCCTTAAATAAGGCAAGCAGTGATTCTCG
65 TTTCTTTGCCCTATTTTTCGTAAAATC-AAGTTCATCCCTTAAATAAGACAAGTATTGATTCTAG
* * *
2258835 TAACAGTCTCCTTTCTTTTCAGGATTAGGA
129 TAACAGTCTCCATTCTTTTTAGGATTAGGC
* * * * * * * * * **** ** * *
2258865 ACCAAAAACACATTC-CCTTCATTAGGATACACGACATTGATGCTTTGGGGTCACAAGAAAAGCT
1 ACTATAAACAAAATCTTC-TCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCT
* * * * **
2258929 TTTC-TTGAAACC-ATTTTT-GATAGAACCAAAGTTTC-TCTCTTAAGA-AAGACAAACA-TGAA
65 TTTCTTTG--CCCTATTTTTCG-TAAAATC-AAG-TTCATCCCTTAA-ATAAGACAAGTATTG-A
* * * * * * **
2258988 TACT-CTTACTAATCCCCATTCTTTTAAGGATTACAC
123 TTCTAGTAAC-AGTCTCCATTCTTTTTAGGATTAGGC
* * ** ** * * ** ** *
2259024 ACCATAAACAAAGTCTTCTCATTAGGATTGACAAAATTGATGCTTTGGTTTCACAAGAAAGA-C-
1 ACTATAAACAAAATCTTCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAA-ATCT
* * * * ** * **
2259087 ATTC-TTGCCACCAATTTTTTTTTGTAAAGTCTAAGTTCA-CGCCACAAATAAGACGAA-CACAG
65 TTTCTTTG-C-CC---TATTTTTCGTAAAATC-AAGTTCATC-CCTTAAATAAGAC-AAGTATTG
* * ** * ** *
2259149 AATATAGTAGTAATCTTTATTCATTTT-GTGATTAGGC
122 ATTCTAGTAACAGTCTCCATTCTTTTTAG-GATTAGGC
* * * * *
2259186 ACTATAAACACATTCTTCGCATTAGGATAAACGATATCGATGGTTTTCTTTTGCATGAAAATCTT
1 ACTATAAACAAAATCTTCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTT
* * *
2259251 TTCTTTGCCCTATTTTTCGTAAAATCAATGTTCATCCCTTAAATAAGCCAAGCATTGATTCTCGT
66 TTCTTTGCCCTATTTTTCGTAAAATCAA-GTTCATCCCTTAAATAAGACAAGTATTGATTCTAGT
* *
2259316 AACAGTTTCCATTTTTTTTAGGATT-GGC
130 AACAGTCTCCATTCTTTTTAGGATTAGGC
* * * * * ** * * ** ** * **
2259344 ACCATAAACATAGTCTTCTCATTAGCATAGACAAAATTGATGCTTTGGTTTCACAAGAAAGGC-T
1 ACTATAAACAAAATCTTCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTT
* * * ** * * * * * * * *
2259408 TTC-TTCCCACCAATTTT-GATAAAGCCTATGATCATGCCTCAACTGAGACAAATATGGATTCTA
66 TTCTTTGCC-CTATTTTTCG-TAAAATC-AAGTTCATCCCTTAAATAAGACAAGTATTGATTCTA
* * * * *
2259471 GTAAGAATCTTCATTCATTTTATGATTAGGC
128 GTAACAGTCTCCATTCTTTTTAGGATTAGGC
* * * *
2259502 ACTATAAACAAATTCTTTTCATTAGGATAAATGATATTGATGCTTTTCTTTTGCATTAAAATCTT
1 ACTATAAACAAAATCTTCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTT
* * * * * * *
2259567 TTCTTTGCCCTATTTTCCTTAAAATCAAAGTTAATCCCTCAAATAAGGCAAGCATTGATTCTTGT
66 TTCTTTGCCCTATTTTTCGTAAAATC-AAGTTCATCCCTTAAATAAGACAAGTATTGATTCTAGT
* * * * * * *
2259632 AATAGGCTCCATTCTTTTCAAGAATGGGA
130 AACAGTCTCCATTCTTTTTAGGATTAGGC
* *** * ** * * ** * * * *
2259661 ACCA-AAATCAGTTTC-CCTTCATTAGGATACTTGACATTGA-AGTCTTGGTGTCGCAAGAAAAG
1 ACTATAAA-CAAAATCTTC-TCATTAGGATAAATGATATTGATGGT-TTTCTTTTGCATGAAAAT
* * * * * ** ** * * **
2259723 GTTTT-TTTTCCCT-TGTTTTTGATAGAATTAAAGTTTGTGTCTCAACTAAGACAAACA-TGAAT
63 CTTTTCTTTGCCCTAT-TTTTCG-TA-AAATCAAGTTCATCCCTTAAATAAGACAAGTATTG-AT
* * * * **
2259785 AT-TCA-T-ACTAATCCCCACTCTTTTAAGGATTACAC
124 -TCT-AGTAAC-AGTCTCCATTCTTTTTAGGATTAGGC
* * * ** ** * * ** ** *
2259820 ACCATAAACAAAGTTTTCTCATTAGGATTGACAAAATTGATGCTTTGGTTTCACAAGAAAGA-C-
1 ACTATAAACAAAATCTTCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAA-ATCT
* * * ** ** * * ** *
2259883 TTTC-TTGCCACCAATTTTTTTGTAAAGTCTAAGTTCGCCCCACAAATGAGACAAGCACGGATTA
65 TTTCTTTG-C-CCTA-TTTTTCGTAAAATC-AAGTTCATCCCTTAAATAAGACAAGTATTGATTC
* ** * ** *
2259947 TAGCAGTAATCTTGATTCATTTT-GTGATTAGGC
126 TAGTAACAGTCTCCATTCTTTTTAG-GATTAGGC
* * * *
2259980 ACTATAAACACATTCTT-TGCATTAGGATAAATGATATCGATGGTTTTCTTTTGCATGAAAATAT
1 ACTATAAACAAAATCTTCT-CATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCT
* * * * * *
2260044 TTTCTTTGCCTTATTTTTTGTAAAATTAATAATGTTCATCCCTTAAATAAGCCAAGCATTGATTA
65 TTTCTTTGCCCTATTTTTCGTAAAA-T--CAA-GTTCATCCCTTAAATAAGACAAGTATTGATTC
* * *
2260109 TCGTAATAGTCTCTATTCTTTTTAGGATT-GGC
126 TAGTAACAGTCTCCATTCTTTTTAGGATTAGGC
* * * * * * * * * ** * *
2260141 ACCATAAACATAGTCTTCTCATTTGGATAGACGAAATTAAT-GCTTTGGTGT-CATAAGAAAAGC
1 ACTATAAACAAAATCTTCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCAT--GAAAATC
* * * * * * * * * ** *
2260204 -TTT-TTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAACTAAGACAAACATAGATTCT
64 TTTTCTTTGCC-CTATTTTTCGTAAAATC-AAGTTCATCCCTTAAATAAGACAAGTATTGATTCT
* * * * *
2260267 AGTGATAATCTTCATTCATTTT-GTGATTAGGC
127 AGTAACAGTCTCCATTCTTTTTAG-GATTAGGC
* * * *
2260299 GCTAT-AACAAAATTCTCCTCATTAGGATAAATGATATTGATGCTATT-TTTTGCATGAAAATCT
1 ACTATAAACAAAA-TCTTCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCT
* *
2260362 TCTT-TTTGCCCTA-TTTTCATTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGTATTGATTCT
65 T-TTCTTTGCCCTATTTTTC-GTAAAATC-AAGTTCATCCCTTAAATAAGACAAGTATTGATTCT
* * *
2260425 TGTAACAGTCTCCACTCTTTTTAAGATT
127 AGTAACAGTCTCCATTCTTTTTAGGATT
2260453 GGGAACCAAA
Statistics
Matches: 4319, Mismatches: 1503, Indels: 714
0.66 0.23 0.11
Matches are distributed among these distances:
155 4 0.00
156 41 0.01
157 633 0.15
158 1583 0.37
159 1527 0.35
160 303 0.07
161 74 0.02
162 141 0.03
163 10 0.00
164 3 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.37
Consensus pattern (158 bp):
ACTATAAACAAAATCTTCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTT
TTCTTTGCCCTATTTTTCGTAAAATCAAGTTCATCCCTTAAATAAGACAAGTATTGATTCTAGTA
ACAGTCTCCATTCTTTTTAGGATTAGGC
Found at i:2255558 original size:473 final size:474
Alignment explanation
Indices: 2254731--2256006 Score: 1543
Period size: 473 Copynumber: 2.7 Consensus size: 474
2254721 GTAACAGTCT
* * *
2254731 CCATTTTTTTTAGGATT-GGCACCATAAACATAGTCTTCTCATTAGGATAGACGAAATTGATGCT
1 CCATTCTTTTAAGGATTACGCACCATAAACATAGTCTTCTCATTAGGATAGACGAAATTGATGCT
* *
2254795 TTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTGAAGCCTAAGTTCATGCCTCAACTG
66 TTGGTTTCACAAGAAAGGCTTTCTT-CCACCAATTTTTG-CAAGTCTAAGTTCATGCCTCAACTG
* * * * * *
2254860 AGACAAATATGGATTCTAGTTAGAATCTTCATTCATTTTATGA-TTAGGCACTATAAACAAATTC
129 AGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTTA-GCGCTATAAACACATTC
*
2254924 TT-TTCATTAGGATAAATGATATTGAT-GTTTTTTTTTGCATT-AAAATCTTTTCTTTGCCCTAT
193 TTCTT-ATTAGGATAAATGATATTGATGGTTTTCTTTTGC-TTGAAAATCTTTTCTTTGCCCTAT
* * * * *
2254986 TTTCCTTAAAATTAAAGTTAATCCCTTAAATAAGGCAAGTATTGATTCTAGTAATAGCCTCCATT
256 TTTCCTTAAAATCAAAGTTCATCCCTTAAGTAAGGCAAGCATTGATTCTAGTAATAGTCTCCATT
* * * * **
2255051 CTTTTCAAGAATGGGAACCAAAATCACTTTCCCTTCACT-AGGATACTTGACATTGA-AGCCTTG
321 CTTTTCAAGAATGAGAACCAAAAACACATTCCCTTCA-TGAAGATACACGACATTGATA-CCTTG
* * ** ** *
2255114 GTG-TCGCAAGAAAAGGTTTT-TTCCCCTA-TTTTTGATAGAATTAAAGTTTGTCTCTCAACTAA
384 GGGAT-GCAAGAAAAGCTTTTCTTCCAATAGTTTTTGATAGAACCAAAGTTTGCCTCTCAACTAA
*
2255176 GACAAACATGAATACTCATACTAATCC
448 GACAAACATGAATACTCACACTAATCC
* *
2255203 CCATTCTTTTAAGGATTACGCACCATAAACATAGTCTTCTCTTTAGGATAGATGAAATTGATGCT
1 CCATTCTTTTAAGGATTACGCACCATAAACATAGTCTTCTCATTAGGATAGACGAAATTGATGCT
* * * * * * *
2255268 TTGGATTCGCAAGAAAGGCTTTCTTCCTACCAATTTTTGCAAGGTCTAAATCCGTGCCTCCACTT
66 TTGGTTTCACAAGAAAGGCTTTCTTCC-ACCAATTTTTGCAA-GTCTAAGTTCATGCCTCAACTG
** * *
2255333 AGAC-AACATGGATTCTACAAATAATCATCATTCATTTTGTGATTTTGCGCTATAAACACATT-T
129 AGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTTAGCGCTATAAACACATTCT
*
2255396 TCCTTAATAGGATAAATGATATTGATGGTTTTCTTTTGCTTGAAAATCTTTTCTTTGCCCTATTT
194 T-CTTATTAGGATAAATGATATTGATGGTTTTCTTTTGCTTGAAAATCTTTTCTTTGCCCTATTT
* * * * *
2255461 TCCTTAAAATCAAAGTTCATGCCTTAAGTAAGGCAAGCATTAATTCTTGTAACAGTCTCTATTCT
258 TCCTTAAAATCAAAGTTCATCCCTTAAGTAAGGCAAGCATTGATTCTAGTAATAGTCTCCATTCT
** * * *
2255526 TTTCAAGCTTGAGAACCAAAAACGCATTCCCTTCATGAAGATACACGACATTTATACTTTGGGGA
323 TTTCAAGAATGAGAACCAAAAACACATTCCCTTCATGAAGATACACGACATTGATACCTTGGGGA
* * *
2255591 TGCAAGAAAAGCTTTTCTTGCAATAGTTTTTGATAGAACCAAGGTTTGCCTCTTAACTAAGACAA
388 TGCAAGAAAAGCTTTTCTTCCAATAGTTTTTGATAGAACCAAAGTTTGCCTCTCAACTAAGACAA
2255656 ACATGAATACTCACACTAATCC
453 ACATGAATACTCACACTAATCC
* * * * *
2255678 CTATTCTTTTAAGGATTATGCACCATAAACATAGTCTTCTCGTTGGGATTGACGAAATTGATGCT
1 CCATTCTTTTAAGGATTACGCACCATAAACATAGTCTTCTCATTAGGATAGACGAAATTGATGCT
* * ** * * * * *
2255743 TTGCTTTTACAAGAAAGATTTTCTTGCCACCAATTTTCGTAATATCTAAGTTCACGCCTCAAATG
66 TTGGTTTCACAAGAAAGGCTTTCTT-CCACCAATTTTTGCAA-GTCTAAGTTCATGCCTCAACTG
* * * ** * * *
2255808 AGTCAAACAAGCATGATAGTAATAATCTTTATTTATTTTGTGA-TTAGGGTCTATAAACACATTC
129 AGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTTAGCG-CTATAAACACATTC
* * *
2255872 TTCTTGTTAGGATAAATGATATTGATGGTTTTCTTTTGCCTGAAAATCTTTTCTTTGCCTTATTT
193 TTCTTATTAGGATAAATGATATTGATGGTTTTCTTTTGCTTGAAAATCTTTTCTTTGCCCTATTT
* * * * *
2255937 TCCCTCAAATCAATGTTCATCCCTTAAGTAAGGGAAGCATTGATTCTCGTAATAGTCTCCATTCT
258 TCCTTAAAATCAAAGTTCATCCCTTAAGTAAGGCAAGCATTGATTCTAGTAATAGTCTCCATTCT
2256002 TTTCA
323 TTTCA
2256007 GGATTGGCAC
Statistics
Matches: 681, Mismatches: 106, Indels: 30
0.83 0.13 0.04
Matches are distributed among these distances:
471 2 0.00
472 87 0.13
473 253 0.37
474 7 0.01
475 166 0.24
476 164 0.24
477 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (474 bp):
CCATTCTTTTAAGGATTACGCACCATAAACATAGTCTTCTCATTAGGATAGACGAAATTGATGCT
TTGGTTTCACAAGAAAGGCTTTCTTCCACCAATTTTTGCAAGTCTAAGTTCATGCCTCAACTGAG
ACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTTAGCGCTATAAACACATTCTTC
TTATTAGGATAAATGATATTGATGGTTTTCTTTTGCTTGAAAATCTTTTCTTTGCCCTATTTTCC
TTAAAATCAAAGTTCATCCCTTAAGTAAGGCAAGCATTGATTCTAGTAATAGTCTCCATTCTTTT
CAAGAATGAGAACCAAAAACACATTCCCTTCATGAAGATACACGACATTGATACCTTGGGGATGC
AAGAAAAGCTTTTCTTCCAATAGTTTTTGATAGAACCAAAGTTTGCCTCTCAACTAAGACAAACA
TGAATACTCACACTAATCC
Found at i:2256277 original size:316 final size:315
Alignment explanation
Indices: 2254412--2261414 Score: 1920
Period size: 317 Copynumber: 22.1 Consensus size: 315
2254402 TTACTAATCC
* * * * * * *
2254412 CCATTCTTTTAAGGATTACGCACCATAAACAAAGTCTTCTCATTAGGATTGACAAAATTGATGGT
1 CCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCCCATTAGGATAGACTAAATTGATGCT
** * * * *
2254477 TTGGTTTCGTAAG-AAAGACATTCTTGCCACCAATT-TTTTTGTAAAGTCTAAGTTCACG-C-CA
66 TT-GTTTCACAAGAAAAG-CTTTCTT-CCA-C--TTATTTTCGTAAAATCTAAGTT--CGTCTCT
* * ** *** * * *
2254538 CAAATAAGACGAACACAGAAAATAGTAGTAATGTTTATTCATTTTGTGATTAGGCA-CTATAAAC
123 CAAATGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTA-GCAGCTATAAAC
* * *
2254602 ACAATCTTCACATTAGGATAAATGATATCGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCC
187 ACATTCTTCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCC
* * * * * *
2254667 TTATTTTTCGTAAAATCAATGTTCATCCCTTAAATAAGCCAAGCATTGATTCTCGTAACAGTCT
252 CTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATTGATTCTCGTAATAGTCT
* * * *
2254731 CCATTTTTTTTAGGATT-GGCACCATAAACATAGTCTTCTCATTAGGATAGACGAAATTGATGCT
1 CCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCCCATTAGGATAGACTAAATTGATGCT
* ** * * ** * *
2254795 TTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTGAAGCCTAAGTTCATGC-CTCAACT
66 TT-GTTTCACAAGAAAAGCTTTCTT-CCACTTATTTTCGTAAAATCTAAGTTCGT-CTCTCAAAT
* * * * *
2254859 GAGACAAATATGGATTCTAGTTAGAATCTTCATTCATTTTATGATTAGGCA-CTATAAACAAATT
128 GAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTA-GCAGCTATAAACACATT
* * *
2254923 CTTTTCATTAGGATAAATGATATTGAT-GTTTTTTTTTGCATTAAAATCTTTTCTTTGCCCTATT
192 CTTCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATT
* * * * * *
2254987 TTCCTTAAAATTAAAGTTAATCCCTTAAATAAGGCAAGTATTGATTCTAGTAATAGCCT
257 TTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATTGATTCTCGTAATAGTCT
* * * * * * *
2255046 CCATTCTTTTCAAGAATGGGAACCA-AAATCACT--T-TCCCTTCACTAGGAT--ACTTGACATT
1 CCATTCTTTTCAGGATTAGGCACCATAAA-CA-TAGTCTTCC--CATTAGGATAGAC-T-AAATT
* * * * * * * * * *
2255105 GAAGCCTTGGTGTCGCAAGAAAAGGTTTTTTCC-CCTATTTTTGATAGAAT-TAAAGTTTGTCTC
60 GATG-CTTTGTTTCACAAGAAAAGCTTTCTTCCACTTATTTTCG-TAAAATCT-AAGTTCGTCTC
* * * * * ** *
2255168 TCAACTAAGACAAACATGAATACTCA-TACTAATCCCCATTC-TTTTAAG-GATTACGCA-CCAT
122 TCAAATGAGACAAACATGGATTCT-AGTAATAATCTTCATTCATTTT--GTGATTA-GCAGCTAT
* * * * * * *** * * **
2255229 AAACATAGTCTTCTCTTTAGGATAGATGAAATTGATGCTTTGGATTCGCAAGAAAGGC-TTTCTT
183 AAACACATTCTTCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTT
* * * ** * * * ** * * * *
2255293 CCT-ACCAATTTT--TGCAAGGTCTAAA-TCCGTGCCTCCACTTAGACAA-CATGGATTCTAC-A
248 --TGCCCTATTTTCCT-TAAAATC-AAAGTTCATCCCTTAAATAAGACAAGCATTGATTCT-CGT
*
2255352 AATAATCAT
308 AATAGTC-T
** * * * * * * * *
2255361 -CATTCATTTT--GTGATTTTGCGCTATAAACACA-TTTTCCTTAATAGGATA-AATGATATTGA
1 CCATTC-TTTTCAG-GATTAGGCACCATAAACATAGTCTTCC-CATTAGGATAGACT-AAATTGA
* * ** ** * * * *
2255421 TGGTTTTCTTTTGCTTGAAAATCTTTTCTTTGCC-C-TATTTTCCTTAAAATCAAAGTTCATGC-
62 T-GCTTTGTTTCACAAGAAAAGC-TTTC-TT-CCACTTATTTT-CGTAAAATCTAAGTTCGT-CT
* * * * * ** * * * ** * * * *
2255483 CTTAAGTAAGGCAAGCATTAATTCTTGTAACAGTC-TCTATTC-TTTTCAAGCTTGAG-AACCAA
121 CTCAAATGAGACAAACATGGATTCTAGTAATAATCTTC-ATTCATTTT-GTGATT-AGCAGCTAT
* * * * * * * * ** ***** * *
2255545 AAACGCATTC-CCTTCATGAAGATACACGACATTTATACTTTGGGGATGCAAGAAAAGCTTTTC-
183 AAACACATTCTTC-TCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCT
** *** * * * * * * **
2255608 TTGCAATAGTTTTTGATAGAACCAAGGTT--TGCCTCTTAACTAAGACAAACA-TGAATACTCAC
247 TTGCCCTA-TTTTCCTTAAAATCAAAGTTCAT-CC-CTTAAATAAGACAAGCATTG-ATTCTCGT
* *
2255670 ACTAATC-
308 AATAGTCT
* * * * * * *
2255677 CCTATTCTTTTAAGGATTATGCACCATAAACATAGTCTTCTCGTTGGGATTGACGAAATTGATGC
1 CC-ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCCCATTAGGATAGACTAAATTGATGC
* * ** *
2255742 TTTGCTTTTACAAG-AAAGATTTTCTTGCCACCAATTTTCGTAATATCTAAGTTCACG-C-CTCA
65 TTTG-TTTCACAAGAAAAG-CTTTCTT-CCACTTATTTTCGTAAAATCTAAGTT--CGTCTCTCA
* * * ** * * *
2255804 AATGAGTCAAACAAGCATGATAGTAATAATCTTTATTTATTTTGTGATTAG-GGTCTATAAACAC
125 AATGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGCAG-CTATAAACAC
** * *
2255868 ATTCTTCTTGTTAGGATAAATGATATTGATGGTTTTCTTTTGCCTGAAAATCTTTTCTTTGCCTT
189 ATTCTTCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCT
* * * * **
2255933 ATTTTCCCTCAAATCAATGTTCATCCCTTAAGTAAGGGAAGCATTGATTCTCGTAATAGTCT
254 ATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATTGATTCTCGTAATAGTCT
*
2255995 CCATTCTTTTCAGGATT-GGCACCATAAGCATAGTCTTCCCATTAGGATAGACTAAATTGATGCT
1 CCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCCCATTAGGATAGACTAAATTGATGCT
* ** * * * * *
2256059 TTGTTTTCACAAGAAAAGCTTTCTTCCTGCTTATTTTAATCAACTCTAAGTTCGTTTCTTAATTG
66 TTG-TTTCACAAGAAAAGCTTTCTTCC-ACTTATTTTCGTAAAATCTAAGTTCGTCTCTCAAATG
* * * *
2256124 AGACAAATATGGATTCTTGGAATAATCTTCATTCATTTTGTGATTATCAGCTATAAACACATTCT
129 AGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGCAGCTATAAACACATTCT
* * *
2256189 GCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGTCGTATTTT
194 TCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTT
* * * *
2256254 CCTTAAAATCAAAGTTAATCCCTTAAAAAAGACAAGCATTGATTCTTGTAACAGTCT
259 CCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATTGATTCTCGTAATAGTCT
* * * * * *
2256311 CCATTCTTTTCAAGATTGGGAACCA-AAATC-TCA-T-TCCCTTCGTTAGGAT--ACTTGACATT
1 CCATTCTTTTCAGGATTAGGCACCATAAA-CAT-AGTCTTCC--CATTAGGATAGAC-T-AAATT
* * * * * * **
2256370 GACGCTTTAGTGTCGCAAGAAAAGGTTTTCTTTCCA-TTATTTT-TTATGGAATAAAAGTAT-GT
60 GATGCTTT-GTTTCACAAGAAAA-GCTTTC-TTCCACTTATTTTCGTA--AAATCTAAGT-TCGT
* * * * * * ** ** *
2256432 CTCGCAACTAAGACAAACATGAATACTCA-TACTAATCCCCATTC-TTTTCAAGATTACGCA-CC
119 CTCTCAAATGAGACAAACATGGATTCT-AGTAATAATCTTCATTCATTTT-GTGATTA-GCAGCT
* * * * ** * * *** * * **
2256494 ATAAACATAGTCTTCTCTTTAGGATAGACAAAATTGACGGTTTGGATTCGCAAGAAAGGC-TTT-
181 ATAAACACATTCTTCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTC
*** *** * * * * * * *
2256557 TTT--CCTACCACTCCTTGCACGGTCCAAGTTCGTGCCTTAATTAAGACAAACATGGATTCTAGT
246 TTTGCCCTA-TTTTCCTT--AAAATCAAAGTTCATCCCTTAAATAAGACAAGCATTGATTCTCGT
* *
2256620 AGTAATCT
308 AATAGTCT
* * * * * * * * * **
2256628 TCATTCTTTT-TGTGATTAGGAACTATAAACACATTCTTCTCATTAGGATAAATTATGTTGATGG
1 CCATTCTTTTCAG-GATTAGGCACCATAAACATAGTCTTCCCATTAGGATAGACTAAATTGAT-G
* * ** * * * * *
2256692 TTTTCTTTTTCATGAAAA-CTTTTCTTTGCC-C-TATTTTTCGTAAAATCAAAGTTCATCCCTTA
64 CTTTGTTTCACAAGAAAAGC-TTTC-TT-CCACTTA-TTTTCGTAAAATCTAAGTTCGTCTCTCA
* * * * * * * * * * * *
2256754 AATAAGGCAAGCATTGATTCTCGTAACAGTCTCCTTTC-TTTTCAG-GATTAAGAACCGA-AAAC
125 AATGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTT--GTGATT-AGCAGCTATAAAC
* * ** * * * **** *
2256816 ACATTC-CCTTCATTAGGATACACAACATAGAT-GCTTTGGGGT-CATAAGAAAAGCTTTTC-TT
187 ACATTCTTC-TCATTAGGATAAATGATATTGATGGTTTTCTTTTGCAT--GAAAATCTTTTCTTT
*** * * ** * * * ** *
2256877 GCAACC-ATTTTTGATAGAACCAAAGTTTC-TGTCTTAACTAAGACAAACA-TGAATACTCACAC
249 GC--CCTATTTTCCTTAAAATCAAAG-TTCATCCCTTAAATAAGACAAGCATTG-ATTCTCGTAA
*
2256939 TAATC-
310 TAGTCT
* * * * * *
2256944 CCTATTCTTTTAAGGATTACGCACCATAAACATAGTCTTCTCGTTAGGATTGACGAAATTGATGC
1 CC-ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCCCATTAGGATAGACTAAATTGATGC
* ** *
2257009 TTTGCTTTCACAAG-AAAGATTTTCTTGCCACCAATTTTCGTAAAATCTATGTTCGTAC-CTCAA
65 TTTG-TTTCACAAGAAAAG-CTTTCTT-CCACTTATTTTCGTAAAATCTAAGTTCGT-CTCTCAA
* * * * *
2257072 ATGAGTCAAACATGGATTATAGTAATAATCTTTATTTATTTTGTGATTA-CGGTCTATAAACACA
126 ATGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGCAG-CTATAAACACA
** * *
2257136 TTCTTCTTGTTAGGATAAATGATATCGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTA
190 TTCTTCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTA
* * * **
2257201 TTTTTCGTAAAATCAATGTTCATCCCTTAAATAAGGGAAGCATTGATTCTCGTAATAGTCT
255 TTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATTGATTCTCGTAATAGTCT
*
2257262 CCATTCTTTTCAGGATT-GGCACCATAAGCATAGTCTTCCCATTAGGATAGACTAAATTGATGCT
1 CCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCCCATTAGGATAGACTAAATTGATGCT
* ** * * * * *
2257326 TTAGTTTCAAAAGAATGGCTTTCTTCCCACTAATTTTTGTCAACTCTAAGTTCGTGTCTCAACA-
66 TT-GTTTCACAAGAAAAGCTTTCTT-CCACTTATTTTCGTAAAATCTAAGTTCGTCTCTCAA-AT
* * * * *
2257390 GAGACAAATATGGATTCTAGGAGTAATCTTCATTCATTTTGTGATTATCAGCTATAAACACGTTC
128 GAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGCAGCTATAAACACATTC
* * * *
2257455 TGCTCGTTAGGATAAATGATATTGACGGTTTTCGTTTGCATGAAAATCTTTTCTTTGCCCTATTT
193 TTCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTT
* * * * *
2257520 TCCTTAAAATCAAAGATAATCCCTTAAAAAAGACAAGCATTGATTCTTGTAATAGTGT
258 TCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATTGATTCTCGTAATAGTCT
* * ** * * * *
2257578 TCATTCTTTTCAAGATCGGGAACCA-AAATC-TCA-T-TCCCTTCGTTAGGATAG-TTGACAA-T
1 CCATTCTTTTCAGGATTAGGCACCATAAA-CAT-AGTCTTCC--CATTAGGATAGACT-A-AATT
* ** * * * ** ** *
2257637 GACGCTTTAGTGACGCAAGAAAAGGTTTTCTTTCC-CTTATTTTTGATGGAATGAAAGTTTGTCT
60 GATGCTTT-GTTTCACAAGAAAA-GCTTTC-TTCCACTTATTTTCG-TAAAATCTAAGTTCGTCT
* * * * * * * * * *
2257701 CGCAACTAAAACAAATATGAATACTCA-TACTAATC-CCAATTC-TTTTCAG-GATTACGCA-CC
121 CTCAAATGAGACAAACATGGATTCT-AGTAATAATCTTC-ATTCATTTT--GTGATTA-GCAGCT
* * * * * * *** * **
2257761 ATAAACATAGTCTTCTCTTTAGGATAGAA-AAAATTGATGCTTTGGATTCGCAAT-AAAGGCTTT
181 ATAAACACATTCTTCTCATTAGGATA-AATGATATTGATGGTTTTCTTTTGC-ATGAAAATCTTT
* * * ** * * * * * * * * *
2257824 T-TTCCT-ACCAATCTTTGC--AAGGTCCAAGTTCGTGCCTCAATTGAGACAAACATGGATTCTA
244 TCTT--TGCCCTAT-TTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATTGATTCTC
* *
2257885 GTAGTAATCT
306 GTAATAGTCT
* * * * * * * * **
2257895 TCATTCTTTT-TGTGATTAGGCACTATAAACACATTCTTCTCATTAGGATAAATTATGTTGATGG
1 CCATTCTTTTCAG-GATTAGGCACCATAAACATAGTCTTCCCATTAGGATAGACTAAATTGAT-G
* * ** * * * * *
2257959 TTTTCTTTTTCATGAAAA-CTTTTCCTTGCC-C-TATTTTTCGTAAAATCAAAGTTCATCCCTTA
64 CTTTGTTTCACAAGAAAAGC-TTT-CTT-CCACTTA-TTTTCGTAAAATCTAAGTTCGTCTCTCA
* * * * * * * * * * * *
2258021 AATAAGGCAAGCATTGATTCTCGTAACAATCTCCTTTC-TTTTCAG-GATTAGGAACCAAAAACA
125 AATGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTT--GTGATTAGCAGCTATAAACA
* * * * * **** ** * *
2258084 CATTC-CCTTCATTAGGATACACGACATTGATGCTTTGGGGTCACAAGAAAAGCTTTTC-TTGCA
188 CATTCTTC-TCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGC-
** * * * * * * ** *
2258147 ACC-ATTGTT-GATAGAACCAAAGTTTC-TCTCTTAACTAAGACAAACA-TGAATACTCACACTA
251 -CCTATT-TTCCTTAAAATCAAAG-TTCATCCCTTAAATAAGACAAGCATTG-ATTCTCGTAATA
*
2258208 ATC-
312 GTCT
* * * * * *
2258211 CCTATTCTTTTAAGGATTACGCACCATAAACATAGTCTTCTCGTTAGGATTGACGAAATTGATGC
1 CC-ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCCCATTAGGATAGACTAAATTGATGC
* ** *
2258276 TTTGCTTTCACAAG-AAAGATTTTCTTACCACCAATTTTCGTAAAATCTATGTTCGTGC-CTCAA
65 TTTG-TTTCACAAGAAAAG-CTTTCTT-CCACTTATTTTCGTAAAATCTAAGTTCGT-CTCTCAA
* * * * *
2258339 ATGAGTCAAACATGGATTATAGTAATAATCTTTATTTATTTTGTGATTA-CGGTCTATAAACACA
126 ATGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGCAG-CTATAAACACA
** * *
2258403 TTCTTCTTGTTTGGATAAATGATATTGATGGTTTTCTTTTGCCTGAAAATCTTTTCTTTGCCCTA
190 TTCTTCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTA
* * ** *
2258468 TTTTCTTTAAAATCAATGTTCATCCCTTAAATAAGGGAAGGATTGATTCTCGTAATAGTCT
255 TTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATTGATTCTCGTAATAGTCT
* * *
2258529 CCATTCTTTTCAGGACT-GGCACCATAAGCATAGTCTTCCCTTTAGGATAGACTAAATTGATGCT
1 CCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCCCATTAGGATAGACTAAATTGATGCT
* ** * * * *
2258593 TTGGTTTCAAAAGAATGGCTTTCTTCCCACTAATCTTT-GTCAACTCTAAGTTCGTGTCTCAACA
66 TT-GTTTCACAAGAAAAGCTTTCTT-CCACTTAT-TTTCGTAAAATCTAAGTTCGTCTCTCAA-A
* * * * *
2258657 -GAGACAAATATGGATTCTAGGAGTAATCTTCATTCATTTTGTGATTATCAGCTATAAACACGTT
127 TGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGCAGCTATAAACACATT
* *
2258721 CTGCTCATTAGGATAAATGATATTCATGGTTTTCTTTTGCATGAAAA-CTTTTCTTTGCCCTATT
192 CTTCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATT
* * * * * *
2258785 TTTCGTAAGATCAAAGTTCATCCCTTAAATAAGGCAAGCAGTGATTCTCGTAACAGTCT
257 TTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATTGATTCTCGTAATAGTCT
* * * * * * * *
2258844 CCTTTCTTTTCAGGATTAGGAACCAAAAACACA-T-TCCCTTCATTAGGATACACGACATTGATG
1 CCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCC--CATTAGGATAGACTAAATTGATG
** ** * * * * * *
2258907 CTTTGGGGTCACAAGAAAAGCTTTTCTTGAAAC-CATTTTTGATAGAACCAAAGTTTC-TCTCTT
64 CTTT-GTTTCACAAGAAAAGC-TTTCTT-CCACTTATTTTCG-TAAAATCTAAG-TTCGTCTCTC
* * * ** * ** * *
2258970 AAGA-AAGACAAACATGAATACTCTTACTAATCCCCATTC-TTTTAAG-GATTA-CACACCATAA
124 AA-ATGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTT--GTGATTAGCA-GCTATAA
* * ** ** * * ** ** * *
2259031 ACAAAGTCTTCTCATTAGGATTGACAAAATTGATGCTTTGGTTTCACAAGAAAGA-C-ATTC-TT
185 ACACATTCTTCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAA-ATCTTTTCTTT
* ** * * ** ** * * *
2259093 GCCACCAATTTTTTTTTGTAAAGTCTAAGTTCA-CGCCACAAATAAGACGAA-CACAGAATATAG
249 G-C-CC--TATTTTCCT-TAAAATCAAAGTTCATC-CCTTAAATAAGAC-AAGCATTGATTCTCG
* *
2259156 TAGTAATCT
307 TAATAGTCT
** * * * * * * * *
2259165 TTATTCATTTT--GTGATTAGGCACTATAAACACATTCTTCGCATTAGGATAAACGATATCGATG
1 CCATTC-TTTTCAG-GATTAGGCACCATAAACATAGTCTTCCCATTAGGATAGACTAAATTGAT-
* * ** * * * *
2259228 GTTTTCTTTTGCATGAAAATCTTTTCTTTGCC-C-TATTTTTCGTAAAATC-AATGTTCATCCCT
63 GCTTTGTTTCACAAGAAAAGC-TTTC-TT-CCACTTA-TTTTCGTAAAATCTAA-GTTCGTCTCT
* * * * * * * * ** * *
2259290 TAAATAAGCCAAGCATTGATTCTCGTAACAGT-TTCCATTTTTTTTAG-GATTGGCA-CCATAAA
123 CAAATGAGACAAACATGGATTCTAGTAATAATCTT-CATTCATTTT-GTGATTAGCAGCTATAAA
* * * * ** * * ** ** * ** **
2259352 CATAGTCTTCTCATTAGCATAGACAAAATTGATGCTTTGGTTTCACAAGAAAGGC-TTTCTTCCC
186 CACATTCTTCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGC
* ** ** * * * * * * * ** * * * *
2259416 ACCAATTTT-GATAAAGCCTATGATCATGCCTCAACTGAGACAAATATGGATTCTAGTAAGAATC
251 -CCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATTGATTCTCGTAATAGTC
2259480 T
315 T
* * * * * ** * *
2259481 TCATTCATTTT-ATGATTAGGCACTATAAACAAATTCTTTTCATTAGGATA-AATGATATTGATG
1 CCATTC-TTTTCAGGATTAGGCACCATAAACATAGTCTTCCCATTAGGATAGACT-AAATTGATG
* ** ** * * * ** *
2259544 CTTTTCTTTTGCATTAAAATCTTTTCTTTGCC-C-TATTTTCCTTAAAATCAAAGTTAATCCCTC
64 C-TTTGTTTCACAAGAAAAGC-TTTC-TT-CCACTTATTTT-CGTAAAATCTAAGTTCGTCTCTC
* * * * * ** * ** * * * * *
2259607 AAATAAGGCAAGCATTGATTCTTGTAATAGGCTCCATTC-TTTTCAAGAATGGGAACCA-AAATC
124 AAATGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTT-GTGATTAGCAGCTATAAA-C
** * ** * * ** * * * ** *
2259670 AGTTTC-CCTTCATTAGGATACTTGACATTGA-AGTCTTGGTGTCGCAAGAAAAGGTTTT-TTTT
187 ACATTCTTC-TCATTAGGATAAATGATATTGATGGT-TTTCTTTTGCATGAAAATCTTTTCTTTG
* *** * * ** ** * * * * *
2259732 CCCTTGTTTTTGATAGAATTAAAGTTTGTGTCTCAACTAAGACAAACA-TGAATAT-TCATACTA
250 CCC-TATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATTG-AT-TCTCGTAATA
* *
2259795 ATCC
312 GTCT
* * ** * * * * *
2259799 CCACTCTTTTAAGGATTACACACCATAAACAAAGTTTTCTCATTAGGATTGACAAAATTGATGCT
1 CCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCCCATTAGGATAGACTAAATTGATGCT
* * * * *
2259864 TTGGTTTCACAAG-AAAGACTTTCTTGCCACCAATT-TTTTTGTAAAGTCTAAGTTCGCCCCACA
66 TT-GTTTCACAAGAAAAG-CTTTCTT-CCA-C--TTATTTTCGTAAAATCTAAGTTCGTCTCTCA
* * * * * *
2259927 AATGAGACAAGCACGGATTATAGCAGTAATCTTGATTCATTTTGTGATTAGGCA-CTATAAACAC
125 AATGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTA-GCAGCTATAAACAC
* * *
2259991 ATTCTT-TGCATTAGGATAAATGATATCGATGGTTTTCTTTTGCATGAAAATATTTTCTTTGCCT
189 ATTCTTCT-CATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCC
* * * *
2260055 TATTTT-TTGTAAAATTAATAATGTTCATCCCTTAAATAAGCCAAGCATTGATTATCGTAATAGT
253 TATTTTCCT-TAAAA-TCA-AA-GTTCATCCCTTAAATAAGACAAGCATTGATTCTCGTAATAGT
2260119 CT
314 CT
* * * * * *
2260121 CTATTCTTTTTAGGATT-GGCACCATAAACATAGTCTTCTCATTTGGATAGACGAAATTAATGCT
1 CCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCCCATTAGGATAGACTAAATTGATGCT
* * * ** * * *
2260185 TTGGTGTCATAAGAAAAGCTTTTTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGC-CTCAACT
66 TT-GTTTCACAAGAAAAGCTTTCTT-CCACTTATTTTCGTAAAATCTAAGTTCGT-CTCTCAAAT
* * * *
2260249 AAGACAAACATAGATTCTAGTGATAATCTTCATTCATTTTGTGATTAGGC-GCTAT-AACAAAAT
128 GAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTA-GCAGCTATAAAC-ACAT
* * *
2260312 TCTCCTCATTAGGATAAATGATATTGATGCTATT-TTTTGCATGAAAATCTTCTT-TTTGCCCTA
191 TCTTCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTT-TTCTTTGCCCTA
* * * * *
2260375 TTTTCATTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGTATTGATTCTTGTAACAGTCT
255 TTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATTGATTCTCGTAATAGTCT
* * * * * * * * **
2260436 CCACTCTTTTTAAGATTGGGAACCA-AAATCACAATCCTT-TCATTAGGAT--ACTTCGCATTGA
1 CCATTCTTTTCAGGATTAGGCACCATAAA-CATAGT-CTTCCCATTAGGATAGAC-T-AAATTGA
* * * * * * ** **
2260497 AGCCTTGGTGTCGCAAGAAAAGGTTTTCTTTCCCCTGT-TTTT-GATGGAAT-TAAAGTTTATCT
62 TG-CTTTGTTTCACAAGAAAA-GCTTTC-TTCCACT-TATTTTCG-TAAAATCT-AAGTTCGTCT
* * * * ** ** * *
2260559 CTCAACTAAGACAAACATGAATACTCA-TACGAATCCCCATTC-TTTTAAG-GATTA-CACACCA
121 CTCAAATGAGACAAACATGGATTCT-AGTAATAATCTTCATTCATTTT--GTGATTAGCA-GCTA
* * * * * * *** * * **
2260620 TAAACATAGTCTTCTCTTTAGGATAGATGAAATTGATGCTTTGGATTCGCAAGAAAGGC-TTTCT
182 TAAACACATTCTTCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCT
* * * * * ** * ** * * *
2260684 TCCT-ACCAATTTT--TGCAAGATCTAAGTTTGTGCCTCTACCT-AGACAAACATGGATTCTAGT
247 T--TGCCCTATTTTCCT-TAAAATCAAAGTTCATCCCT-TAAATAAGACAAGCATTGATTCTCGT
*
2260745 AATAATCT
308 AATAGTCT
* ** * * * * * * * *
2260753 TCATTCATTTT--GTGATTTTGCGCTATAAACACATTCTCCCCAGTAGGATA-AATGATATTGAT
1 CCATTC-TTTTCAG-GATTAGGCACCATAAACATAGTCTTCCCATTAGGATAGACT-AAATTGAT
* * ** ** ** * * * *
2260815 GGTTTTCTTTTGCTTGAAATTCTTTTCTTTACC-C-TATTTTCCTTAAAATCAAAGTTCATCCCT
63 -GCTTTGTTTCACAAGAAAAGC-TTTC-TT-CCACTTATTTT-CGTAAAATCTAAGTTCGTCTCT
* * * * * * * * * ** * * *
2260878 TAAGTAAGGCAAGCATTGATTCTTGT-ATCAGTC-TCTATGC-TTTTCAAGCTTGAG-AACTAAA
123 CAAATGAGACAAACATGGATTCTAGTAAT-AATCTTC-ATTCATTTT-GTGATT-AGCAGCTATA
* ** * * **** * *
2260939 AACACATTCCTT-TCATTAGGATACACAACATTGATGCTTTGGGGTTGCAAGAAAAGCTTTTC-T
184 AACACATT-CTTCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTT
* *** * * * * *** ** *
2261002 TGCAAC-AGTTTTTGATAGAATCAAAATT--TGCCTCTTAACTAAGACAAACACAAAAACTCATA
248 TGC-CCTA-TTTTCCTTAAAATCAAAGTTCAT-CC-CTTAAATAAGACAAGCATTGATTCTCGTA
* * *
2261064 CTAATCC
309 ATAGTCT
* * * * * *
2261071 CCAATCTTTTAAGGATTACGCACCATAAACATAGTCTTCTCTTTAGGATTGA-TGAAATTGATGC
1 CCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCCCATTAGGATAGACT-AAATTGATGC
** * *
2261135 TTTGCTTTCACAAG-AAAGACTTTCTTGCCACCAATTTTCGTAAAATCTTAGTTCGTTTCTCAAA
65 TTTG-TTTCACAAGAAAAG-CTTTCTT-CCACTTATTTTCGTAAAATCTAAGTTCGTCTCTCAAA
* * * *
2261199 TGAGTCAAACATGGATTATAGAAATAATCTTTATTCATTTTGTGATTAGTCA-CTATAAACACAT
127 TGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAG-CAGCTATAAACACAT
* * *
2261263 TCTTCTCATGAGGATAAATGATATTGATGGTTTTCTTTTGCCTGAAAATCGTTTCTTTGCCCTAT
191 TCTTCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTAT
* * * * **
2261328 TTCCCTTAAAATCAATGTTCATCCTTTAAATAAGGCAAGCATTGATTCTCGTAACCGTCT
256 TTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATTGATTCTCGTAATAGTCT
*
2261388 CCATTTTTTTCAGGATT-GGCACCATAA
1 CCATTCTTTTCAGGATTAGGCACCATAA
2261415 GGATTCTAGT
Statistics
Matches: 4889, Mismatches: 1419, Indels: 755
0.69 0.20 0.11
Matches are distributed among these distances:
314 89 0.02
315 408 0.08
316 1529 0.31
317 1554 0.32
318 672 0.14
319 262 0.05
320 104 0.02
321 197 0.04
322 70 0.01
323 4 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.37
Consensus pattern (315 bp):
CCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCCCATTAGGATAGACTAAATTGATGCT
TTGTTTCACAAGAAAAGCTTTCTTCCACTTATTTTCGTAAAATCTAAGTTCGTCTCTCAAATGAG
ACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGCAGCTATAAACACATTCTTC
TCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCC
TTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATTGATTCTCGTAATAGTCT
Found at i:2257034 original size:792 final size:790
Alignment explanation
Indices: 2255203--2257034 Score: 1702
Period size: 792 Copynumber: 2.3 Consensus size: 790
2255193 ATACTAATCC
* * * * * *
2255203 CCATTCTTTTAAGGATTACGCACCATAAACATAGTCTTCTCTTTAGGATAGA-TGAAATTGATGC
1 CCATTCTTTTCAGGATTA-GAACCATAAACACAGTCTTC-CATTAGGATACACT-AAATAGATGC
** * * * * * * *
2255267 TTTGGATTCGCAAGAAAGGCTTTCTTCCTACCA-ATTTT--TGCAAGGTCTAAA-TCCGTGCCTC
63 TTTGGGGTCACAAGAAAAGCTTTCTT-CAACCATATTTTAAT-CAA-CTC-AAAGTTCGTGTCTT
* * * * * * *
2255328 CACTTAGAC-AACATGGATTCT-ACAAATAATCATCATTCATTTTGTGATTTTGC-GCTATAAAC
124 AACTAAGACAAACATGAATACTCAC-AATAATCCTCATTCATTTTGTGA-TTAGCAGCCATAAAC
* * * * * * * * * ** **
2255390 ACATTTTCCTTAATAGGATAAATGATATTGATGGTTTTCTTTTGCTTGAAAATCTTTTCTTTGCC
187 ACAGTCTGCTCATTAGGATAAACGAAATTGATGCTTTGCTTTCACAAGAAAA-CTTTTCTTTGCC
* * ** *
2255455 CTATTTTCCTTAAAATCAAAGTTCATGCCTTAAGTAAGGCAAGCATTAATTCTTGTAACAGTCTC
251 CTATTTTCCTTAAAATCAAAGTTAATCCCTTAAAAAAGACAAGCATTAATTCTTGTAACAGTCTC
* * * *
2255520 TATTCTTTTCAAGCTTGAGAACCAAAAACGCATTCCCTTCATGAAGATACACGACATTTATACTT
316 CATTCTTTTCAAGATTGAGAACCAAAAACGCATTCCCTTCATGAAGATACACGACATTGACACTT
* * * * * **
2255585 TGGGGATGCAAGAAAAGCTTTTCTTGCAATAGTTTTTGATAGAACCAAGGTTTGCCTCTTAACTA
381 TAGGGATGCAAGAAAAGCTTTTCTTCCAATAGTTTTTGATAGAACAAAAGTATGCCTCGCAACTA
* *
2255650 AGACAAACATGAATACTCACACTAATCCCTATTCTTTTAAGGATTATGCACCATAAACATAGTCT
446 AGACAAACATGAATACTCACACTAATCCCCATTCTTTTAAGGATTACGCACCATAAACATAGTCT
* * * * * * *
2255715 TCTCGTTGGGATTGACGAAATTGATGCTTTGCTTTTACAAGAAAGATTTTCTTGCCACCAATTTT
511 TCTCGTTAGGATAGACAAAATTGACGCTTTGCATTCACAAGAAAGATTTTCTTGCCACCAATCTT
* * * * * *
2255780 CGTAATATCTAAGTTCACGCCTCAAATGAGTCAAACAAGCATGATAGTAATAATCTTTATTTATT
576 CGCAAGATCCAAGTTCACGCCTCAAATAAGACAAACAAGCATGATAGTAATAATCTTCATTTATT
** **
2255845 TTGTGATTAGGGTCTATAAACACATTCTTCTTGTTAGGATAAATGATATTGATGGTTTTCTTTTG
641 TTGTGATTAGGAACTATAAACACATTCTTCTCATTAGGATAAATGATATTGATGGTTTTCTTTTG
* * * * * *
2255910 CCTGAAAATCTTTTCTTTGCCTTATTTTCCCTCAAATCAATGTTCATCCCTTAAGTAAGGGAAGC
706 CATGAAAATCTTTTCTTTGCCCTATTTTCCCTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGC
*
2255975 ATTGATTCTCGTAATAGTCT
771 ATTGATTCTCGTAACAGTCT
* * * * * *
2255995 CCATTCTTTTCAGGATTGGCACCATAAGCATAGTCTTCCCATTAGGATAGACTAAATTGATGCTT
1 CCATTCTTTTCAGGATTAGAACCATAAACACAGTCTT-CCATTAGGATACACTAAATAGATGCTT
*** *** * * * * *
2256060 TGTTTTCACAAGAAAAGCTTTCTTCCTGCTTATTTTAATCAACTCTAAGTTCGTTTCTTAATTGA
65 TGGGGTCACAAGAAAAGCTTTCTTCAACCATATTTTAATCAACTCAAAGTTCGTGTCTTAACTAA
* * * *** * * * *
2256125 GACAAATATGGATTCTTGGAATAATCTTCATTCATTTTGTGATTATCAGCTATAAACACATTCTG
130 GACAAACATGAATACTCACAATAATCCTCATTCATTTTGTGATTAGCAGCCATAAACACAGTCTG
* * * * ** * * *
2256190 CTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGTCGTATTTTC
195 CTCATTAGGATAAACGAAATTGATGCTTTGCTTTCACAAGAAAA-CTTTTCTTTGCCCTATTTTC
*
2256255 CTTAAAATCAAAGTTAATCCCTTAAAAAAGACAAGCATTGATTCTTGTAACAGTCTCCATTCTTT
259 CTTAAAATCAAAGTTAATCCCTTAAAAAAGACAAGCATTAATTCTTGTAACAGTCTCCATTCTTT
* * * * * * ** * *
2256320 TCAAGATTGGGAACCAAAATCTCATTCCCTTCGTTAGGATACTTGACATTGACGCTTTAGTG-TC
324 TCAAGATTGAGAACCAAAAACGCATTCCCTTCATGAAGATACACGACATTGACACTTTAGGGAT-
* * * * * *
2256384 GCAAGAAAAGGTTTTCTTTCCATTA-TTTTTTATGGAATAAAAGTATGTCTCGCAACTAAGACAA
388 GCAAGAAAAGCTTTTC-TTCCAATAGTTTTTGATAGAACAAAAGTATGCCTCGCAACTAAGACAA
* *
2256448 ACATGAATACTCATACTAATCCCCATTCTTTTCAA-GATTACGCACCATAAACATAGTCTTCTCT
452 ACATGAATACTCACACTAATCCCCATTCTTTT-AAGGATTACGCACCATAAACATAGTCTTCTCG
* * * * *
2256512 TTAGGATAGACAAAATTGACGGTTTGGATTCGCAAGAAAGGCTTTT-TT-CCTACCACTCCTT-G
516 TTAGGATAGACAAAATTGACGCTTTGCATTCACAAGAAA-GATTTTCTTGCC-ACCAAT-CTTCG
* * ** * * * * ** *
2256574 CACGGTCCAAGTTCGTGCCTTAATTAAGACAAACATGGATTCTAGTAGTAATCTTCATTCT-TTT
578 CAAGATCCAAGTTCACGCCTCAAATAAGACAAACAAGCATGATAGTAATAATCTTCATT-TATTT
* * *
2256638 TGTGATTAGGAACTATAAACACATTCTTCTCATTAGGATAAATTATGTTGATGGTTTTCTTTTTC
642 TGTGATTAGGAACTATAAACACATTCTTCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGC
* *
2256703 ATGAAAA-CTTTTCTTTGCCCTATTTTTCGTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCA
707 ATGAAAATCTTTTCTTTGCCCTATTTTCCCTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCA
2256767 TTGATTCTCGTAACAGTCT
772 TTGATTCTCGTAACAGTCT
* *
2256786 CCTTTCTTTTCAGGATTAAGAACCGA-AAACACATTCCCTT-CATTAGGATACAC-AACATAGAT
1 CCATTCTTTTCAGGATT-AGAACC-ATAAACACAGT--CTTCCATTAGGATACACTAA-ATAGAT
* * *
2256848 GCTTTGGGGTCATAAGAAAAGCTTTTCTTGCAACCAT-TTTTGATAGAAC-CAAAGTTTC-TGTC
61 GCTTTGGGGTCACAAGAAAAGC-TTTCTT-CAACCATATTTTAAT-CAACTCAAAG-TTCGTGTC
*
2256910 TTAACTAAGACAAACATGAATACTCACACTAATCC-CTATTC-TTTTAAG-GATTACGCA-CCAT
122 TTAACTAAGACAAACATGAATACTCACAATAATCCTC-ATTCATTTT--GTGATTA-GCAGCCAT
* * * **
2256971 AAACATAGTCTTCTCGTTAGGATTGACGAAATTGATGCTTTGCTTTCACAAGAAAGA-TTTTCTT
183 AAACACAGTCTGCTCATTAGGATAAACGAAATTGATGCTTTGCTTTCACAAGAAA-ACTTTTCTT
2257035 GCCACCAATT
Statistics
Matches: 849, Mismatches: 161, Indels: 60
0.79 0.15 0.06
Matches are distributed among these distances:
790 4 0.00
791 172 0.20
792 541 0.64
793 116 0.14
794 16 0.02
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (790 bp):
CCATTCTTTTCAGGATTAGAACCATAAACACAGTCTTCCATTAGGATACACTAAATAGATGCTTT
GGGGTCACAAGAAAAGCTTTCTTCAACCATATTTTAATCAACTCAAAGTTCGTGTCTTAACTAAG
ACAAACATGAATACTCACAATAATCCTCATTCATTTTGTGATTAGCAGCCATAAACACAGTCTGC
TCATTAGGATAAACGAAATTGATGCTTTGCTTTCACAAGAAAACTTTTCTTTGCCCTATTTTCCT
TAAAATCAAAGTTAATCCCTTAAAAAAGACAAGCATTAATTCTTGTAACAGTCTCCATTCTTTTC
AAGATTGAGAACCAAAAACGCATTCCCTTCATGAAGATACACGACATTGACACTTTAGGGATGCA
AGAAAAGCTTTTCTTCCAATAGTTTTTGATAGAACAAAAGTATGCCTCGCAACTAAGACAAACAT
GAATACTCACACTAATCCCCATTCTTTTAAGGATTACGCACCATAAACATAGTCTTCTCGTTAGG
ATAGACAAAATTGACGCTTTGCATTCACAAGAAAGATTTTCTTGCCACCAATCTTCGCAAGATCC
AAGTTCACGCCTCAAATAAGACAAACAAGCATGATAGTAATAATCTTCATTTATTTTGTGATTAG
GAACTATAAACACATTCTTCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATC
TTTTCTTTGCCCTATTTTCCCTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTC
GTAACAGTCT
Found at i:2257055 original size:792 final size:778
Alignment explanation
Indices: 2255437--2257804 Score: 1940
Period size: 792 Copynumber: 3.0 Consensus size: 778
2255427 TCTTTTGCTT
* * * * * *
2255437 GAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATGCCTTAAGTAAGGCAAGCATT
1 GAAAA-CTTTTCTTTGACCAATTTTCCGTAAAATCAAAGTTCATACCTTAAATAAGACAAGCATT
* * * * * * *
2255502 AATTCTTGTAACAGTCTCTATTCTTTTCAAGCTTGAGAACCAAAAACGCATTCCCTTCATGAAGA
65 GATTCTTGTAACAGTCTCTATTCTTTTCAAGATTGGGAACC-AAAACACATTCCCTTCGTTAGGA
* * * * * * * * *
2255567 TACACGACATTTATACTTTGGGGATGCAAGAAAAGCTTTTC-TTGCAATAGTTTTTGATAGAACC
129 TACATGACATTGATGCTTTAGTG-TGCAAGAAAAGCTTTTCTTTCCATTA-TTTTTCATAGAATC
* * * *
2255631 AAGGTTTGCCTCTTAACTAAGACAAACATGAATACTCACACTAATCCCTATTCTTTT-AAGGATT
192 AAAG-TTGTCTCTTAACTAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAA-GATT
* * * * * * *
2255695 ATGCACCATAAACATAGTCTTCTCGTTGGGATTGACGAAATTGATGCTTTGCTTTTACAAGAAA-
255 ACGCACCATAAACATAGTCTTCTCATTAGGATAGACAAAATTGATGCTTTGGTTTCACAAGAAAG
* * * ** * * * * **
2255759 GATTTTCTTGCCACCAATTTTCGTAATATCTAAGTTCACGCCTCAAATGAGTCAAACAAGCATGA
320 GCTTTT-TT-CCACCAATTTT-G-CA-CTCTAAGTTCGTGCCTC-AATAAGACAAACATGGATTC
* * ** *
2255824 TAGTAATAATCTTTATT-TATTTTGTGATTAGGGTCTATAAACACATTCTTCTTGTTAGGATAAA
379 TAGTAGTAATCTTCATTCT-TTTTGTGATTAGGAACTATAAACACATTCTTCTCGTTAGGATAAA
* * * *
2255888 TGATATTGATGGTTTTCTTTTGCCTGAAAATCTTTTCTTTGCCTTATTTTCCCTCAAATCAATGT
443 TGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCCTAAAATCAAAGT
* * *
2255953 TCATCCCTTAAGTAAGGGAAGCATTGATTCTCGTAATAGTCTCCATTCTTTTCAGGATTGGCACC
508 TCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAATAGTCTCCATTCTTTTCAGGATTGGAACC
* * * * * *
2256018 ATAAGCATAGT--CTTCCCATTAGGATAGACTAA-ATTGATGCTTTGTTTTCACAAGAAAAGC-T
573 A-AAACACATTCCCTT--CATTAGGATAGAC-AACATAGATGCTTTGGTGTCACAAGAAAAGCTT
* * * * * * * * * **
2256079 TTCTTCCTGCTTATTTTAATCAACTCTAAG-TTCGTTTCTTAATTGAGACAAATATGGATTCTTG
634 TTCTTCC--CAT-TTTTGATGAAC-CAAAGTTTC-TCTCTTAACTAAGACAAATATGAATACTCA
* * * * * * * *
2256143 GAATAAT-CTTCATTCATTTT-GTGATTA-TCAGCTATAAACACATTCTGCTCATTAGGATA-AA
694 CACTAATCCCT-ATTC-TTTTAG-GATTACGCA-CCATAAACATAGTCTTCTCATTAGGATAGAA
* * * ** *
2256204 TGATATTGATGGTTTTCTTTTGCAT
755 -GAAATTGATGCTTTGCTTTCACAA
* ** * * * *
2256229 GAAAATCTTTTCTTTGTCGTATTTTCCTTAAAATCAAAGTTAATCCCTTAAAAAAGACAAGCATT
1 GAAAA-CTTTTCTTTGACCAATTTTCCGTAAAATCAAAGTTCATACCTTAAATAAGACAAGCATT
* *
2256294 GATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAATCTCATTCCCTTCGTTAGGA
65 GATTCTTGTAACAGTCTCTATTCTTTTCAAGATTGGGAACCAAAA-CACATTCCCTTCGTTAGGA
* * * * * *
2256359 TACTTGACATTGACGCTTTAGTGTCGCAAGAAAAGGTTTTCTTTCCATTATTTTTTATGGAATAA
129 TACATGACATTGATGCTTTAGTGT-GCAAGAAAAGCTTTTCTTTCCATTATTTTTCATAGAATCA
**
2256424 AAGTATGTCTCGCAACTAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAAGATTAC
193 AAGT-TGTCTCTTAACTAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAAGATTAC
* * * * *
2256489 GCACCATAAACATAGTCTTCTCTTTAGGATAGACAAAATTGACGGTTTGGATTCGCAAGAAAGGC
257 GCACCATAAACATAGTCTTCTCATTAGGATAGACAAAATTGATGCTTTGGTTTCACAAGAAAGGC
* * * *
2256554 TTTTTTCCTACCACTCCTTGCACGGTCCAAGTTCGTGCCTTAATTAAGACAAACATGGATTCTAG
322 TTTTTTCC-ACCAAT-TTTGCAC--TCTAAGTTCGTGCCTCAA-TAAGACAAACATGGATTCTAG
* *
2256619 TAGTAATCTTCATTCTTTTTGTGATTAGGAACTATAAACACATTCTTCTCATTAGGATAAATTAT
382 TAGTAATCTTCATTCTTTTTGTGATTAGGAACTATAAACACATTCTTCTCGTTAGGATAAATGAT
* * * *
2256684 GTTGATGGTTTTCTTTTTCATGAAAA-CTTTTCTTTGCCCTATTTTTCGTAAAATCAAAGTTCAT
447 ATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCCTAAAATCAAAGTTCAT
* * *
2256748 CCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCTTTCTTTTCAGGATTAAGAACCGAA
512 CCCTTAAATAAGGCAAGCATTGATTCTCGTAATAGTCTCCATTCTTTTCAGGATT-GGAACC-AA
* * *
2256813 AACACATTCCCTTCATTAGGATACACAACATAGATGCTTTGGGGTCATAAGAAAAGCTTTTCTTG
575 AACACATTCCCTTCATTAGGATAGACAACATAGATGCTTTGGTGTCACAAGAAAAGCTTTTCTT-
* *
2256878 CAACCATTTTTGATAGAACCAAAGTTTCTGTCTTAACTAAGACAAACATGAATACTCACACTAAT
639 C--CCATTTTTGAT-GAACCAAAGTTTCTCTCTTAACTAAGACAAATATGAATACTCACACTAAT
* * *
2256943 CCCTATTCTTTTAAGGATTACGCACCATAAACATAGTCTTCTCGTTAGGATTGACGAAATTGATG
701 CCCTATTCTTTT-AGGATTACGCACCATAAACATAGTCTTCTCATTAGGATAGAAGAAATTGATG
2257008 CTTTGCTTTCACAA
765 CTTTGCTTTCACAA
* * * * * * *
2257022 GAAAGA-TTTTC-TTGCCACCAATTTT-CGTAAAATCTATGTTCGTACCTCAAATGAGTCAAACA
1 GAAA-ACTTTTCTTTG--ACCAATTTTCCGTAAAATCAAAGTTCATACCTTAAATAAGACAAGCA
* * * * * * *** * * * *
2257084 TGGATTATAGTAATAATCTTTATT-TATTTTGTGATTACGG-TCTATAAACACATTCTTCTT-GT
63 TTGATTCTTGTAACAGTCTCTATTCT-TTTCAAGATT-GGGAACCA-AAACACATTC-CCTTCGT
* * * * ** * * * *
2257146 TAGGATAAATGATATCGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCC-TTATTTTTCGTA
124 TAGGATACATGACATTGAT-GCTTTAGTGTGCAAGAAAAGCTTTTCTTT-CCATTATTTTTCATA
* * * * * ** * * * * * *
2257210 AAATCAATGTTCATCCCTTAAATAAGGGAAGCATTG-ATTCTCGTAATAGTCTCCATTCTTTTCA
187 GAATCAAAGTT-GTCTCTTAACTAAGACAAACA-TGAATACTCATACTAATCCCCATTCTTTTCA
* * * * * * *
2257274 GGATT-GGCACCATAAGCATAGTCTTCCCATTAGGATAGACTAAATTGATGCTTTAGTTTCAAAA
250 AGATTACGCACCATAAACATAGTCTTCTCATTAGGATAGACAAAATTGATGCTTTGGTTTCACAA
* * * * * *
2257338 GAATGGCTTTCTTCCCACTAATTTTTGTCAACTCTAAGTTCGTGTCTCAACAGAGACAAATATGG
315 GAAAGGCTTT-TTTCCACCAA-TTTTG-C-ACTCTAAGTTCGTGCCTCAATA-AGACAAACATGG
* * ** * * *
2257403 ATTCTAGGAGTAATCTTCATTCATTTTGTGATTATCAGCTATAAACACGTTCTGCTCGTTAGGAT
375 ATTCTAGTAGTAATCTTCATTCTTTTTGTGATTAGGAACTATAAACACATTCTTCTCGTTAGGAT
* * *
2257468 AAATGATATTGACGGTTTTCGTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
440 AAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCCTAAAATCAA
* * * * * * * * *
2257533 AGATAATCCCTTAAAAAAGACAAGCATTGATTCTTGTAATAGTGTTCATTCTTTTCAAGATCGGG
505 AGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAATAGTCTCCATTCTTTTCAGGAT-TGG
* * *** * * * * *
2257598 AACCAAAATCTCATTCCCTTCGTTAGGATAGTTGACA-ATGACGCTTTAGTGACGCAAGAAAAGG
569 AACCAAAA-CACATTCCCTTCATTAGGATAGACAACATA-GATGCTTTGGTGTCACAAGAAAAGC
** * ** *
2257662 TTTTCTTTCCCTTATTTTTGATGGAATGAAAGTTTGTCTCGCAACTAAAACAAATATGAATACTC
632 TTTTC-TTCCC--ATTTTTGAT-GAACCAAAGTTTCTCTCTTAACTAAGACAAATATGAATACTC
* * * *
2257727 ATACTAATCCCAATTCTTTTCAGGATTACGCACCATAAACATAGTCTTCTCTTTAGGATAGAAAA
693 ACACTAATCCCTATTCTTTT-AGGATTACGCACCATAAACATAGTCTTCTCATTAGGATAGAAGA
2257792 AATTGATGCTTTG
757 AATTGATGCTTTG
2257805 GATTCGCAAT
Statistics
Matches: 1267, Mismatches: 258, Indels: 102
0.78 0.16 0.06
Matches are distributed among these distances:
790 3 0.00
791 281 0.22
792 822 0.65
793 141 0.11
794 19 0.01
796 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.37
Consensus pattern (778 bp):
GAAAACTTTTCTTTGACCAATTTTCCGTAAAATCAAAGTTCATACCTTAAATAAGACAAGCATTG
ATTCTTGTAACAGTCTCTATTCTTTTCAAGATTGGGAACCAAAACACATTCCCTTCGTTAGGATA
CATGACATTGATGCTTTAGTGTGCAAGAAAAGCTTTTCTTTCCATTATTTTTCATAGAATCAAAG
TTGTCTCTTAACTAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAAGATTACGCAC
CATAAACATAGTCTTCTCATTAGGATAGACAAAATTGATGCTTTGGTTTCACAAGAAAGGCTTTT
TTCCACCAATTTTGCACTCTAAGTTCGTGCCTCAATAAGACAAACATGGATTCTAGTAGTAATCT
TCATTCTTTTTGTGATTAGGAACTATAAACACATTCTTCTCGTTAGGATAAATGATATTGATGGT
TTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCCTAAAATCAAAGTTCATCCCTTAAAT
AAGGCAAGCATTGATTCTCGTAATAGTCTCCATTCTTTTCAGGATTGGAACCAAAACACATTCCC
TTCATTAGGATAGACAACATAGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTCCCATTTTTGAT
GAACCAAAGTTTCTCTCTTAACTAAGACAAATATGAATACTCACACTAATCCCTATTCTTTTAGG
ATTACGCACCATAAACATAGTCTTCTCATTAGGATAGAAGAAATTGATGCTTTGCTTTCACAA
Found at i:2257307 original size:475 final size:472
Alignment explanation
Indices: 2255995--2257329 Score: 1481
Period size: 475 Copynumber: 2.8 Consensus size: 472
2255985 GTAATAGTCT
* * * * *
2255995 CCATTCTTTTCAGGATT-GGCACCATAAGCATAGTCTTCCCATTAGGATAGACTAAATTGATGCT
1 CCATTCTTTTAAGGATTACGCACCATAAACATAGTCTTCTCATTAGGATAGACAAAATTGATGCT
* * * ** * * * **
2256059 TTGTTTTCACAAGAAA-AGCTTTCTTCCTGCTTATTTTAATCAACTCTAAGTTCGTTTCTTAATT
66 TTGCTTTCACAAGAAAGA-TTTTCTTCCTACCAATTTT-GTAAAATCTAAGTTCGTACCTTAATT
* * * * *
2256123 GAGACAAATATGGATTCTTGGAATAATCTTCATTCATTTTGTGATTATCAGCTATAAACACATTC
129 GAGACAAACATGGATTCTAGTAATAATCTTCATTTATTTTGTGATTA-CGGCTATAAACACATTC
* * *
2256188 TGCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGTCGTATTT
193 TTCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTT
* * * * * *
2256253 TCCTTAAAATCAAAGTTAATCCCTTAAAAAAGACAAGCATTGATTCTTGTAACAGTCTCCATTCT
258 TTCGTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCT
* * * * *** * *
2256318 TTTCAAGATTGGGAACCAAA-ATCTCATTCCCTTCGTTAGGATACTTGACATTGACGCTTTAGTG
323 TTTCAGGATTAGGAACCAAACATATC-TT-CC-TCATTAGGATACACAACATTGATGCTTTAGGG
* * * * ** * * * *
2256382 TCGCAAGAAAAGGTTTTCTTTCCATTATTTTTTATGGAATAAAAGTATGTCTCGCAACTAAGACA
385 TCACAAGAAAAGCTTTTCTTGCAACCATTTTTGATAGAACAAAAGTATCTCTCGCAACTAAGACA
*
2256447 AACATGAATACTCATACTAATCC
450 AACATGAATACTCACACTAATCC
* * *
2256470 CCATTCTTTTCAA-GATTACGCACCATAAACATAGTCTTCTCTTTAGGATAGACAAAATTGACGG
1 CCATTCTTTT-AAGGATTACGCACCATAAACATAGTCTTCTCATTAGGATAGACAAAATTGATGC
** * * * * * *** * *
2256534 TTTGGATTCGCAAGAAAGGCTTTT-TTCCTACCACTCCTTGCACGGTCCAAGTTCGTGCCTTAAT
65 TTTGCTTTCACAAGAAA-GATTTTCTTCCTACCAAT-TTTGTAAAATCTAAGTTCGTACCTTAAT
* *
2256598 TAAGACAAACATGGATTCTAGTAGTAATCTTCATTCT-TTTTGTGATTA-GGAACTATAAACACA
128 TGAGACAAACATGGATTCTAGTAATAATCTTCATT-TATTTTGTGATTACGG--CTATAAACACA
* * *
2256661 TTCTTCTCATTAGGATAAATTATGTTGATGGTTTTCTTTTTCATGAAAA-CTTTTCTTTGCCCTA
190 TTCTTCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTA
*
2256725 TTTTTCGTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCTT
255 TTTTTCGTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCAT
* * * * *
2256790 TCTTTTCAGGATTAAGAACCGAAAACACAT-TCCCTTCATTAGGATACACAACATAGATGCTTTG
320 TCTTTTCAGGATTAGGAACC--AAACATATCTTCC-TCATTAGGATACACAACATTGATGCTTTA
* * * * **
2256854 GGGTCATAAGAAAAGCTTTTCTTGCAACCATTTTTGATAGAACCAAAGTTTCTGTCTTAACTAAG
382 GGGTCACAAGAAAAGCTTTTCTTGCAACCATTTTTGATAGAACAAAAGTATCTCTCGCAACTAAG
2256919 ACAAACATGAATACTCACACTAATCC
447 ACAAACATGAATACTCACACTAATCC
* * * *
2256945 CTATTCTTTTAAGGATTACGCACCATAAACATAGTCTTCTCGTTAGGATTGACGAAATTGATGCT
1 CCATTCTTTTAAGGATTACGCACCATAAACATAGTCTTCTCATTAGGATAGACAAAATTGATGCT
* * *
2257010 TTGCTTTCACAAGAAAGATTTTCTTGCC-ACCAATTTTCGTAAAATCTATGTTCGTACCTCAAAT
66 TTGCTTTCACAAGAAAGATTTTCTT-CCTACCAATTTT-GTAAAATCTAAGTTCGTACCTTAATT
* * *
2257074 GAGTCAAACATGGATTATAGTAATAATCTTTATTTATTTTGTGATTACGGTCTATAAACACATTC
129 GAGACAAACATGGATTCTAGTAATAATCTTCATTTATTTTGTGATTACGG-CTATAAACACATTC
** * *
2257139 TTCTTGTTAGGATAAATGATATCGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTT
193 TTCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTT
* * *
2257204 TTCGTAAAATCAATGTTCATCCCTTAAATAAGGGAAGCATTGATTCTCGTAATAGTCTCCATTCT
258 TTCGTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCT
* *
2257269 TTTCAGGATT-GGCACCATAAGCATAGTCTTCC-CATTAGGATAGACTAA-ATTGATGCTTTAG
323 TTTCAGGATTAGGAACCA-AA-CATA-TCTTCCTCATTAGGATACAC-AACATTGATGCTTTAG
2257330 TTTCAAAAGA
Statistics
Matches: 714, Mismatches: 123, Indels: 46
0.81 0.14 0.05
Matches are distributed among these distances:
473 1 0.00
474 13 0.02
475 417 0.58
476 270 0.38
477 11 0.02
478 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (472 bp):
CCATTCTTTTAAGGATTACGCACCATAAACATAGTCTTCTCATTAGGATAGACAAAATTGATGCT
TTGCTTTCACAAGAAAGATTTTCTTCCTACCAATTTTGTAAAATCTAAGTTCGTACCTTAATTGA
GACAAACATGGATTCTAGTAATAATCTTCATTTATTTTGTGATTACGGCTATAAACACATTCTTC
TCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTTC
GTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTT
CAGGATTAGGAACCAAACATATCTTCCTCATTAGGATACACAACATTGATGCTTTAGGGTCACAA
GAAAAGCTTTTCTTGCAACCATTTTTGATAGAACAAAAGTATCTCTCGCAACTAAGACAAACATG
AATACTCACACTAATCC
Found at i:2257877 original size:792 final size:789
Alignment explanation
Indices: 2256600--2258069 Score: 1975
Period size: 792 Copynumber: 1.9 Consensus size: 789
2256590 GCCTTAATTA
* * *
2256600 AGACAAACATGGATTCTAGTAGTAATCTTCATTCTTTTTGTGATTAGGAACTATAAACACATTCT
1 AGACAAACATGGATTCTAGGAGTAATCTTCATTCATTTTGTGATTAGCAACTATAAACACATTCT
* * * * * * *
2256665 TCTCATTAGGATAAATTATGTTGATGGTTTTCTTTTTCATGAAAACTTTTCTTTGCCCTATTTTT
66 GCTCATTAGGATAAATGATATTGACGGTTTTCGTTTGCATGAAAACTTTTCTTTGCCCTATTTTC
* * * * *
2256730 CGTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCTTTCTTT
131 CGTAAAATCAAAGATAATCCCTTAAAAAAGACAAGCATTGATTCTCGTAACAGTCTCCATTCTTT
* * * * *
2256795 TCAGGATTAAGAACCGAAAACACATTCCCTTCATTAGGATACACAACATAGATGCTTTGGGGTCA
196 TCAAGATCAAGAACCGAAAACACATTCCCTTCATTAGGATACACAACATAGACGCTTTAGGGACA
* * ** *
2256860 TAAGAAAAGCTTTTCTTGCAACCATTTTTGATAGAACCAAAGTTTCTGTCTTAACTAAGACAAAC
261 CAAGAAAAGCTTTTCTTGC-ACCATTTTTGATAGAACCAAAGTTTCTCTCGCAACTAAAACAAAC
*
2256925 ATGAATACTCACACTAATCCCTATTCTTTTAAGGATTACGCACCATAAACATAGTCTTCTCGTTA
325 ATGAATACTCACACTAATCCCAATTCTTTTAAGGATTACGCACCATAAACATAGTCTTCTCGTTA
* ** * *
2256990 GGATTGACGAAATTGATGCTTTGCTTTCACAAGAAAGATTTTCTTGCCACCAATTTTCGTAAAAT
390 GGATAGAAAAAATTGATGCTTTGCATTCACAAGAAAGATTTTCTTGCCACCAATTTTCGCAAAAT
* * * *
2257055 CTATGTTCGTACCTCAAATGAGTCAAACATGGATTATAGTAATAATCTTTATT-TATTTTGTGAT
455 CCAAGTTCGTACCTCAAATGAGACAAACATGGATTATAGTAATAATCTTCATTCT-TTTTGTGAT
* **
2257119 TACGG-TCTATAAACACATTCTTCTTGTTAGGATAAATGATATCGATGGTTTTCTTTTGCATGAA
519 TA-GGCACTATAAACACATTCTTCTCATTAGGATAAATGATATCGATGGTTTTCTTTTGCATGAA
* * * *
2257183 AATCTTTTCTTTGCCTTATTTTTCGTAAAATCAATGTTCATCCCTTAAATAAGGGAAGCATTGAT
583 AA-CTTTTCCTTGCCCTATTTTTCGTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGAT
* *
2257248 TCTCGTAATAGTCTCCATTCTTTTCAGGATTGGCACCATAAGCATAGTCTTCCCATTAGGATAGA
647 TCTCGTAACAATCTCCATTCTTTTCAGGATTGGCACCATAAGCATAGTCTTCCCATTAGGATAGA
2257313 CTAAATTGATGCTTTAGTTTCAAAAGAATGGCTTTCTTCCCACTAATTTTTGTCAACTCTAAGTT
712 CTAAATTGATGCTTTAGTTTCAAAAGAATGGCTTTCTTCCCACTAATTTTTGTCAACTCTAAGTT
2257378 CGTGTCTCAACAG
777 CGTGTCTCAACAG
* * * *
2257391 AGACAAATATGGATTCTAGGAGTAATCTTCATTCATTTTGTGATTATCAGCTATAAACACGTTCT
1 AGACAAACATGGATTCTAGGAGTAATCTTCATTCATTTTGTGATTAGCAACTATAAACACATTCT
*
2257456 GCTCGTTAGGATAAATGATATTGACGGTTTTCGTTTGCATGAAAATCTTTTCTTTGCCCTATTTT
66 GCTCATTAGGATAAATGATATTGACGGTTTTCGTTTGCATGAAAA-CTTTTCTTTGCCCTATTTT
* * * * *
2257521 CCTTAAAATCAAAGATAATCCCTTAAAAAAGACAAGCATTGATTCTTGTAATAGTGTTCATTCTT
130 CCGTAAAATCAAAGATAATCCCTTAAAAAAGACAAGCATTGATTCTCGTAACAGTCTCCATTCTT
** * * **** *
2257586 TTCAAGATCGGGAACC-AAAATCTCATTCCCTTCGTTAGGATAGTTGACA-ATGACGCTTTAGTG
195 TTCAAGATCAAGAACCGAAAA-CACATTCCCTTCATTAGGATACACAACATA-GACGCTTTAGGG
* * * * ** *
2257649 ACGCAAGAAAAGGTTTTCTTTC-CCTTATTTTTGATGGAATGAAAGTTTGTCTCGCAACTAAAAC
258 ACACAAGAAAAGCTTTTCTTGCACC--ATTTTTGATAGAACCAAAGTTTCTCTCGCAACTAAAAC
* * *
2257713 AAATATGAATACTCATACTAATCCCAATTCTTTTCAGGATTACGCACCATAAACATAGTCTTCTC
321 AAACATGAATACTCACACTAATCCCAATTCTTTTAAGGATTACGCACCATAAACATAGTCTTCTC
* * * * *
2257778 TTTAGGATAGAAAAAATTGATGCTTTGGATTCGCAATAAAGGCTTTT-TT-CCTACCAATCTTT-
386 GTTAGGATAGAAAAAATTGATGCTTTGCATTCACAAGAAA-GATTTTCTTGCC-ACCAAT-TTTC
** * * * *
2257840 GCAAGGTCCAAGTTCGTGCCTCAATTGAGACAAACATGGATTCTAGTAGTAATCTTCATTCTTTT
448 GCAAAATCCAAGTTCGTACCTCAAATGAGACAAACATGGATTATAGTAATAATCTTCATTCTTTT
* * * *
2257905 TGTGATTAGGCACTATAAACACATTCTTCTCATTAGGATAAATTATGTTGATGGTTTTCTTTTTC
513 TGTGATTAGGCACTATAAACACATTCTTCTCATTAGGATAAATGATATCGATGGTTTTCTTTTGC
2257970 ATGAAAACTTTTCCTTGCCCTATTTTTCGTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCAT
578 ATGAAAACTTTTCCTTGCCCTATTTTTCGTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCAT
*
2258035 TGATTCTCGTAACAATCTCCTTTCTTTTCAGGATT
643 TGATTCTCGTAACAATCTCCATTCTTTTCAGGATT
2258070 AGGAACCAAA
Statistics
Matches: 580, Mismatches: 89, Indels: 20
0.84 0.13 0.03
Matches are distributed among these distances:
790 2 0.00
791 191 0.33
792 378 0.65
793 9 0.02
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.37
Consensus pattern (789 bp):
AGACAAACATGGATTCTAGGAGTAATCTTCATTCATTTTGTGATTAGCAACTATAAACACATTCT
GCTCATTAGGATAAATGATATTGACGGTTTTCGTTTGCATGAAAACTTTTCTTTGCCCTATTTTC
CGTAAAATCAAAGATAATCCCTTAAAAAAGACAAGCATTGATTCTCGTAACAGTCTCCATTCTTT
TCAAGATCAAGAACCGAAAACACATTCCCTTCATTAGGATACACAACATAGACGCTTTAGGGACA
CAAGAAAAGCTTTTCTTGCACCATTTTTGATAGAACCAAAGTTTCTCTCGCAACTAAAACAAACA
TGAATACTCACACTAATCCCAATTCTTTTAAGGATTACGCACCATAAACATAGTCTTCTCGTTAG
GATAGAAAAAATTGATGCTTTGCATTCACAAGAAAGATTTTCTTGCCACCAATTTTCGCAAAATC
CAAGTTCGTACCTCAAATGAGACAAACATGGATTATAGTAATAATCTTCATTCTTTTTGTGATTA
GGCACTATAAACACATTCTTCTCATTAGGATAAATGATATCGATGGTTTTCTTTTGCATGAAAAC
TTTTCCTTGCCCTATTTTTCGTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTC
GTAACAATCTCCATTCTTTTCAGGATTGGCACCATAAGCATAGTCTTCCCATTAGGATAGACTAA
ATTGATGCTTTAGTTTCAAAAGAATGGCTTTCTTCCCACTAATTTTTGTCAACTCTAAGTTCGTG
TCTCAACAG
Found at i:2258143 original size:475 final size:472
Alignment explanation
Indices: 2257264--2258543 Score: 1516
Period size: 475 Copynumber: 2.7 Consensus size: 472
2257254 AATAGTCTCC
* * * *
2257264 ATTCTTTTCAGGATT-GGCACCATAAGCATAGTCTTCCCATTAGGATAGACTAAATTGATGCTTT
1 ATTCTTTTCAGGATTACGCACCATAAACATAGTCTTCTCATTAGGATAGACAAAATTGATGCTTT
* * * * * * *
2257328 AGTTTCAAAAGAATGGCTTTCTTCCCACTAATTTTTGTCAACTCTAAGTTCGTGTCTCAACA-GA
66 GGTTTCACAAGAAAGGCTTT-TTTCCACCAA-TTTTG-CAAATCTAAGTTCGTGCCTCAA-ATGA
* * * * *
2257392 GACAAATATGGATTCTAGGAGTAATCTTCATTCATTTTGTGATTA-TCAGCTATAAACACGTTCT
127 GACAAACATGGATTCTAGTAGTAATCTTCATTCTTTTTGTGATTAGGCA-CTATAAACACATTCT
* * *
2257456 GCTCGTTAGGATAAATGATATTGACGGTTTTCGTTTGCATGAAAATCTTTTCTTTGCCCTATTTT
191 TCTCGTTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTT
* * * * * * * *
2257521 CCTTAAAATCAAAGATAATCCCTTAAAAAAGACAAGCATTGATTCTTGTAATAGTGTTCATTCTT
256 TCTTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAATAGTCTCCATTCTT
* * * * * *** *
2257586 TTCAAGATCGGGAACCAAAATCTCATTCCCTTCGTTAGGATAGTTGACAATGACGCTTTAGTGAC
321 TTCAGGATCAGGAACCAAAAACACATTCCCTTCATTAGGATACACGACAATGACGCTTTAGGGAC
* * * * * ** *
2257651 GCAAGAAAAGGTTTTCTTTC-CCTTATTTTTGATGGAATGAAAGTTTGTCTCGCAACTAAAACAA
386 ACAAGAAAAGCTTTTCTTGCACC--ATTGTTGATAGAACCAAAGTTTCTCTCGCAACTAAAACAA
* *
2257715 ATATGAATACTCATACTAATCCCA
449 ACATGAATACTCACACTAATCCCA
* *
2257739 ATTCTTTTCAGGATTACGCACCATAAACATAGTCTTCTCTTTAGGATAGAAAAAATTGATGCTTT
1 ATTCTTTTCAGGATTACGCACCATAAACATAGTCTTCTCATTAGGATAGACAAAATTGATGCTTT
* * * * * *
2257804 GGATTCGCAATAAAGGCTTTTTTCCTACCAATCTTTGCAAGGTCCAAGTTCGTGCCTCAATTGAG
66 GGTTTCACAAGAAAGGCTTTTTTCC-ACCAAT-TTTGCAA-ATCTAAGTTCGTGCCTCAAATGAG
2257869 ACAAACATGGATTCTAGTAGTAATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTTC
128 ACAAACATGGATTCTAGTAGTAATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTTC
* * * * *
2257934 TCATTAGGATAAATTATGTTGATGGTTTTCTTTTTCATGAAAA-CTTTTCCTTGCCCTATTTTTC
193 TCGTTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTTC
* * * *
2257998 GTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAATCTCCTTTCTTTT
258 TTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAATAGTCTCCATTCTTTT
* * * * *
2258063 CAGGATTAGGAACCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGGGTCAC
323 CAGGATCAGGAACCAAAAACACATTCCCTTCATTAGGATACACGACAATGACGCTTTAGGGACAC
** *
2258128 AAGAAAAGCTTTTCTTGCAACCATTGTTGATAGAACCAAAGTTTCTCTCTTAACTAAGACAAACA
388 AAGAAAAGCTTTTCTTGC-ACCATTGTTGATAGAACCAAAGTTTCTCTCGCAACTAAAACAAACA
*
2258193 TGAATACTCACACTAATCCCT
452 TGAATACTCACACTAATCCCA
* * * *
2258214 ATTCTTTTAAGGATTACGCACCATAAACATAGTCTTCTCGTTAGGATTGACGAAATTGATGCTTT
1 ATTCTTTTCAGGATTACGCACCATAAACATAGTCTTCTCATTAGGATAGACAAAATTGATGCTTT
* * * *
2258279 GCTTTCACAAGAAA-GATTTTCTTACCACCAATTTTCGTAAAATCTATGTTCGTGCCTCAAATGA
66 GGTTTCACAAGAAAGGCTTTT-TT-CCACCAATTTT-G-CAAATCTAAGTTCGTGCCTCAAATGA
* * * * *
2258343 GTCAAACATGGATTATAGTAATAATCTTTATT-TATTTTGTGATTACGG-TCTATAAACACATTC
127 GACAAACATGGATTCTAGTAGTAATCTTCATTCT-TTTTGTGATTA-GGCACTATAAACACATTC
* * *
2258406 TTCTTGTTTGGATAAATGATATTGATGGTTTTCTTTTGCCTGAAAATCTTTTCTTTGCCCTA-TT
190 TTCTCGTTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTT
* * *
2258470 TTCTTTAAAATCAATGTTCATCCCTTAAATAAGGGAAGGATTGATTCTCGTAATAGTCTCCATTC
255 TTC-TTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAATAGTCTCCATTC
2258535 TTTTCAGGA
319 TTTTCAGGA
2258544 CTGGCACCAT
Statistics
Matches: 683, Mismatches: 106, Indels: 31
0.83 0.13 0.04
Matches are distributed among these distances:
474 9 0.01
475 410 0.60
476 260 0.38
477 4 0.01
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.37
Consensus pattern (472 bp):
ATTCTTTTCAGGATTACGCACCATAAACATAGTCTTCTCATTAGGATAGACAAAATTGATGCTTT
GGTTTCACAAGAAAGGCTTTTTTCCACCAATTTTGCAAATCTAAGTTCGTGCCTCAAATGAGACA
AACATGGATTCTAGTAGTAATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTTCTCG
TTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTTCTTA
AAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAATAGTCTCCATTCTTTTCAG
GATCAGGAACCAAAAACACATTCCCTTCATTAGGATACACGACAATGACGCTTTAGGGACACAAG
AAAAGCTTTTCTTGCACCATTGTTGATAGAACCAAAGTTTCTCTCGCAACTAAAACAAACATGAA
TACTCACACTAATCCCA
Found at i:2260352 original size:796 final size:793
Alignment explanation
Indices: 2257739--2260980 Score: 4008
Period size: 796 Copynumber: 4.1 Consensus size: 793
2257729 ACTAATCCCA
* *
2257739 ATTCTTTTCAGGATTACGCACCATAAACATAGTCTTCTC-TTTAGGATAGAAAAAATTGATGCTT
1 ATTCTTTTCAGGATT-GGCACCATAAACATAGTCTTCTCATTTAGGATAGACAAAATTGATGCTT
* * * * * * * * * *
2257803 TGGATTCGCAATAAAGGCTTTTTTCCTACCAATCTTTGCAAGGTCCAAGTTCGTGCCTCAATTGA
65 TGGTTTCACAAGAAAGGCTTTCTTCCCACCAATCTTTGTAAAGTCTAAGTTCGTGCCTCAACTAA
* *
2257868 GACAAACATGGATTCTAGT-AGTAATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCT
130 GACAAACATGGATTCTAGTGAGTAATCTTCATTCATTTTGTGATTAGGCACTATAAACAAATTCT
* * * * * *
2257932 TCTCATTAGGATAAATTATGTTGATGGTTTTCTTTTTCATGAAAACTTTTCCTTGCCCTATTTTT
195 TCTCATTAGGATAAATGATATTGATGCTTTTCTTTTGCATGAAAACTTTTCTTTGCCCTATTTTC
* *
2257997 CGTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAATCTCCTTTCTTT
260 CGTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTT
* *
2258062 TCAGGATTAGGAACCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGGGTCA
325 TCAAGATTAGGAACCAAAAACACATTCCCTTCATTAGGATACACGACATTGAAGCTTTGGGGTCA
* *
2258127 CAAGAAAAGCTTTTCTTGCAACCATTG---TTGATAGAACCAAAGTTTCTCTCTTAACTAAGACA
390 CAAGAAAAGCTTTTCTTTC--CC-TTGTTTTTGATAGAACCAAAGTTTCTCTCTCAACTAAGACA
* * * * *
2258189 AACATGAATACTCACACTAATCCCTATTCTTTTAAGGATTACGCACCATAAACATAGTCTTCTCG
452 AACATGAATACTCATACTAATCCCCATTCTTTTAAGGATTACACACCATAAACAAAGTCTTCTCA
* * * * *
2258254 TTAGGATTGACGAAATTGATGCTTTGCTTTCACAAGAAAGATTTTCTTACCACCAATTTTCGTAA
517 TTAGGATTGACAAAATTGATGCTTTGGTTTCACAAGAAAGACTTTCTTGCCACCAATTTTTGTAA
* * * * * * *
2258319 AATCTATGTTCGTGCCTCAAATGAGTCAAACATGGATTATAGTAATAATCTTTATTTATTTTGTG
582 AGTCTAAGTTCGCGCCACAAATGAGACAAACACGGATTATAGTAATAATCTTTATTCATTTTGTG
* *** * * *
2258384 ATTACGG-TCTATAAACACATTCTTCTTGTTTGGATAAATGATATTGATGGTTTTCTTTTGCCTG
647 ATTA-GGCACTATAAACACATTCTTCGCATTAGGATAAATGATATCGATGGTTTTCTTTTGCATG
** *
2258448 AAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAATGTTCATCCCTTAAATAAGGGAAGGATTG
711 AAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAATGTTCATCCCTTAAATAAGCCAAGCATTG
2258513 ATTCTCGTAATAGTCTCC
776 ATTCTCGTAATAGTCTCC
* * * *
2258531 ATTCTTTTCAGGACTGGCACCATAAGCATAGTCTTC-CCTTTAGGATAGACTAAATTGATGCTTT
1 ATTCTTTTCAGGATTGGCACCATAAACATAGTCTTCTCATTTAGGATAGACAAAATTGATGCTTT
* * * * * *
2258595 GGTTTCAAAAGAATGGCTTTCTTCCCACTAATCTTTGTCAACTCTAAGTTCGTGTCTCAAC-AGA
66 GGTTTCACAAGAAAGGCTTTCTTCCCACCAATCTTTGTAAAGTCTAAGTTCGTGCCTCAACTA-A
* * **
2258659 GACAAATATGGATTCTAG-GAGTAATCTTCATTCATTTTGTGATTA-TCAGCTATAAACACGTTC
130 GACAAACATGGATTCTAGTGAGTAATCTTCATTCATTTTGTGATTAGGCA-CTATAAACAAATTC
* * *
2258722 TGCTCATTAGGATAAATGATATTCATGGTTTTCTTTTGCATGAAAACTTTTCTTTGCCCTATTTT
194 TTCTCATTAGGATAAATGATATTGATGCTTTTCTTTTGCATGAAAACTTTTCTTTGCCCTATTTT
* * * *
2258787 TCGTAAGATCAAAGTTCATCCCTTAAATAAGGCAAGCAGTGATTCTCGTAACAGTCTCCTTTCTT
259 CCGTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTT
* *
2258852 TTCAGGATTAGGAACCAAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGGGTC
324 TTCAAGATTAGGAACCAAAAACACATTCCCTTCATTAGGATACACGACATTGAAGCTTTGGGGTC
** * * **
2258917 ACAAGAAAAGCTTTTCTTGAAACC--ATTTTTGATAGAACCAAAGTTTCTCTCTTAAGAAAGACA
389 ACAAGAAAAGCTTTTCTT--TCCCTTGTTTTTGATAGAACCAAAGTTTCTCTCTCAACTAAGACA
*
2258980 AACATGAATACTCTTACTAATCCCCATTCTTTTAAGGATTACACACCATAAACAAAGTCTTCTCA
452 AACATGAATACTCATACTAATCCCCATTCTTTTAAGGATTACACACCATAAACAAAGTCTTCTCA
*
2259045 TTAGGATTGACAAAATTGATGCTTTGGTTTCACAAGAAAGACATTCTTGCCACCAATTTTTTTTT
517 TTAGGATTGACAAAATTGATGCTTTGGTTTCACAAGAAAGACTTTCTTGCCACCAA----TTTTT
* * * * * *
2259110 GTAAAGTCTAAGTTCACGCCACAAATAAGACGAACACAGAATATAGTAGTAATCTTTATTCATTT
578 GTAAAGTCTAAGTTCGCGCCACAAATGAGACAAACACGGATTATAGTAATAATCTTTATTCATTT
*
2259175 TGTGATTAGGCACTATAAACACATTCTTCGCATTAGGATAAACGATATCGATGGTTTTCTTTTGC
643 TGTGATTAGGCACTATAAACACATTCTTCGCATTAGGATAAATGATATCGATGGTTTTCTTTTGC
*
2259240 ATGAAAATCTTTTCTTTGCCCTATTTT-TCGTAAAATCAATGTTCATCCCTTAAATAAGCCAAGC
708 ATGAAAATCTTTTCTTTGCCCTATTTTCT-TTAAAATCAATGTTCATCCCTTAAATAAGCCAAGC
* *
2259304 ATTGATTCTCGTAACAGTTTCC
772 ATTGATTCTCGTAATAGTCTCC
* * *
2259326 ATTTTTTTTAGGATTGGCACCATAAACATAGTCTTCTCA-TTAGCATAGACAAAATTGATGCTTT
1 ATTCTTTTCAGGATTGGCACCATAAACATAGTCTTCTCATTTAGGATAGACAAAATTGATGCTTT
* * * * *
2259390 GGTTTCACAAGAAAGGCTTTCTTCCCACCAAT-TTTGATAAAGCCTATGATCATGCCTCAACTGA
66 GGTTTCACAAGAAAGGCTTTCTTCCCACCAATCTTTG-TAAAGTCTAAGTTCGTGCCTCAACTAA
* * *
2259454 GACAAATATGGATTCTAGTAAG-AATCTTCATTCATTTTATGATTAGGCACTATAAACAAATTCT
130 GACAAACATGGATTCTAGTGAGTAATCTTCATTCATTTTGTGATTAGGCACTATAAACAAATTCT
* *
2259518 TTTCATTAGGATAAATGATATTGATGCTTTTCTTTTGCATTAAAATCTTTTCTTTGCCCTATTTT
195 TCTCATTAGGATAAATGATATTGATGCTTTTCTTTTGCATGAAAA-CTTTTCTTTGCCCTATTTT
* * * * * *
2259583 CCTTAAAATCAAAGTTAATCCCTCAAATAAGGCAAGCATTGATTCTTGTAATAGGCTCCATTCTT
259 CCGTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTT
* * * ** ** *
2259648 TTCAAGAATGGGAACCAAAATCAGTTTCCCTTCATTAGGATACTTGACATTGAAG-TCTTGGTGT
324 TTCAAGATTAGGAACCAAAAACACATTCCCTTCATTAGGATACACGACATTGAAGCT-TTGGGGT
* * * ** * *
2259712 CGCAAGAAAAGGTTTTTTTTCCCTTGTTTTTGATAGAATTAAAGTTTGTGTCTCAACTAAGACAA
388 CACAAGAAAAGCTTTTCTTTCCCTTGTTTTTGATAGAACCAAAGTTTCTCTCTCAACTAAGACAA
* * *
2259777 ACATGAATATTCATACTAATCCCCACTCTTTTAAGGATTACACACCATAAACAAAGTTTTCTCAT
453 ACATGAATACTCATACTAATCCCCATTCTTTTAAGGATTACACACCATAAACAAAGTCTTCTCAT
2259842 TAGGATTGACAAAATTGATGCTTTGGTTTCACAAGAAAGACTTTCTTGCCACCAATTTTTTTGTA
518 TAGGATTGACAAAATTGATGCTTTGGTTTCACAAGAAAGACTTTCTTGCCACCAA--TTTTTGTA
* * * * *
2259907 AAGTCTAAGTTCGCCCCACAAATGAGACAAGCACGGATTATAGCAGTAATCTTGATTCATTTTGT
581 AAGTCTAAGTTCGCGCCACAAATGAGACAAACACGGATTATAGTAATAATCTTTATTCATTTTGT
*
2259972 GATTAGGCACTATAAACACATTCTTTGCATTAGGATAAATGATATCGATGGTTTTCTTTTGCATG
646 GATTAGGCACTATAAACACATTCTTCGCATTAGGATAAATGATATCGATGGTTTTCTTTTGCATG
* * *
2260037 AAAATATTTTCTTTGCCTTATTTT-TTGTAAAATTAATAATGTTCATCCCTTAAATAAGCCAAGC
711 AAAATCTTTTCTTTGCCCTATTTTCTT-TAAAA-T--CAATGTTCATCCCTTAAATAAGCCAAGC
* *
2260101 ATTGATTATCGTAATAGTCTCT
772 ATTGATTCTCGTAATAGTCTCC
* * *
2260123 ATTCTTTTTAGGATTGGCACCATAAACATAGTCTTCTCATTT-GGATAGACGAAATTAATGCTTT
1 ATTCTTTTCAGGATTGGCACCATAAACATAGTCTTCTCATTTAGGATAGACAAAATTGATGCTTT
* * * *
2260187 GGTGTCATAAGAAAAGCTTTTTTCCCACCAAT-TTTGGTAAAGTCTAAGTTCGTGCCTCAACTAA
66 GGTTTCACAAGAAAGGCTTTCTTCCCACCAATCTTT-GTAAAGTCTAAGTTCGTGCCTCAACTAA
* *
2260251 GACAAACATAGATTCTAGTGA-TAATCTTCATTCATTTTGTGATTAGGCGCTAT-AACAAAATTC
130 GACAAACATGGATTCTAGTGAGTAATCTTCATTCATTTTGTGATTAGGCACTATAAAC-AAATTC
* *
2260314 TCCTCATTAGGATAAATGATATTGATGCTATT-TTTTGCATGAAAATCTTCTT-TTTGCCCTATT
194 TTCTCATTAGGATAAATGATATTGATGCTTTTCTTTTGCATGAAAA-CTT-TTCTTTGCCCTATT
** * * *
2260377 TTCATTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGTATTGATTCTTGTAACAGTCTCCACTC
257 TTCCGTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTC
* * * * * * * *
2260442 TTTTTAAGATTGGGAACCAAAATCACAATCCTTTCATTAGGATACTTCG-CATTGAAGCCTTGGT
322 TTTTCAAGATTAGGAACCAAAAACACATTCCCTTCATTAGGATAC-ACGACATTGAAGCTTTGGG
* * * * ** *
2260506 GTCGCAAGAAAAGGTTTTCTTTCCCCTGTTTTTGATGGAATTAAAGTTTATCTCTCAACTAAGAC
386 GTCACAAGAAAAGCTTTTCTTTCCCTTGTTTTTGATAGAACCAAAGTTTCTCTCTCAACTAAGAC
* *
2260571 AAACATGAATACTCATACGAATCCCCATTCTTTTAAGGATTACACACCATAAACATAGTCTTCTC
451 AAACATGAATACTCATACTAATCCCCATTCTTTTAAGGATTACACACCATAAACAAAGTCTTCTC
* * ** * * *
2260636 TTTAGGATAGATGAAATTGATGCTTTGGATTCGCAAGAAAGGCTTTCTT-CCTACCAATTTTTG-
516 ATTAGGATTGACAAAATTGATGCTTTGGTTTCACAAGAAAGACTTTCTTGCC-ACCAATTTTTGT
* * * * ** * * *
2260699 CAAGATCTAAGTTTGTGCCTCTACCT-AGACAAACATGGATTCTAGTAATAATCTTCATTCATTT
580 AAAG-TCTAAGTTCGCGCCAC-AAATGAGACAAACACGGATTATAGTAATAATCTTTATTCATTT
** * * * * *
2260763 TGTGATTTTGCGCTATAAACACATTCTCCCCAGTAGGATAAATGATATTGATGGTTTTCTTTTGC
643 TGTGATTAGGCACTATAAACACATTCTTCGCATTAGGATAAATGATATCGATGGTTTTCTTTTGC
* * * * * * *
2260828 TTGAAATTCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAGTAAGGCAAGCA
708 ATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAATCAATGTTCATCCCTTAAATAAGCCAAGCA
* *
2260893 TTGATTCTTGT-ATCAGTCTCT
773 TTGATTCTCGTAAT-AGTCTCC
* * * * * * * * * *
2260914 ATGCTTTTCAAGCTTGAGAACTAAAAACACATTCCTT-TCA-TTAGGATACACAACATTGATGCT
1 ATTCTTTTCAGGATTG-GCACCATAAACATAGT-CTTCTCATTTAGGATAGACAAAATTGATGCT
2260977 TTGG
64 TTGG
2260981 GGTTGCAAGA
Statistics
Matches: 2144, Mismatches: 263, Indels: 86
0.86 0.11 0.03
Matches are distributed among these distances:
790 5 0.00
791 549 0.26
792 48 0.02
793 7 0.00
794 300 0.14
795 390 0.18
796 601 0.28
797 241 0.11
798 3 0.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.36
Consensus pattern (793 bp):
ATTCTTTTCAGGATTGGCACCATAAACATAGTCTTCTCATTTAGGATAGACAAAATTGATGCTTT
GGTTTCACAAGAAAGGCTTTCTTCCCACCAATCTTTGTAAAGTCTAAGTTCGTGCCTCAACTAAG
ACAAACATGGATTCTAGTGAGTAATCTTCATTCATTTTGTGATTAGGCACTATAAACAAATTCTT
CTCATTAGGATAAATGATATTGATGCTTTTCTTTTGCATGAAAACTTTTCTTTGCCCTATTTTCC
GTAAAATCAAAGTTCATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTCTTTT
CAAGATTAGGAACCAAAAACACATTCCCTTCATTAGGATACACGACATTGAAGCTTTGGGGTCAC
AAGAAAAGCTTTTCTTTCCCTTGTTTTTGATAGAACCAAAGTTTCTCTCTCAACTAAGACAAACA
TGAATACTCATACTAATCCCCATTCTTTTAAGGATTACACACCATAAACAAAGTCTTCTCATTAG
GATTGACAAAATTGATGCTTTGGTTTCACAAGAAAGACTTTCTTGCCACCAATTTTTGTAAAGTC
TAAGTTCGCGCCACAAATGAGACAAACACGGATTATAGTAATAATCTTTATTCATTTTGTGATTA
GGCACTATAAACACATTCTTCGCATTAGGATAAATGATATCGATGGTTTTCTTTTGCATGAAAAT
CTTTTCTTTGCCCTATTTTCTTTAAAATCAATGTTCATCCCTTAAATAAGCCAAGCATTGATTCT
CGTAATAGTCTCC
Found at i:2261081 original size:476 final size:472
Alignment explanation
Indices: 2260140--2261405 Score: 1578
Period size: 476 Copynumber: 2.7 Consensus size: 472
2260130 TTAGGATTGG
* * * *
2260140 CACCATAAACATAGTCTTCTCATTT-GGATAGACGAAATTAATGCTTTGGTGTCATAAGAAAAGC
1 CACCATAAACATAGTCTTCTC-TTTAGGATAGATGAAATTGATGCTTTGGT-TCACAAGAAAGGC
* * *
2260204 TTTTTTCCCACCAATTTTGGTAAAGTCTAAGTTCGTGCCTCAACTAAGACAAACATAGATTCTAG
64 TTTCTT-CCACCAATTTTCGTAAA-TCTAAGTTCGTGCCTCAACTAAGACAAACATGGATTCTAG
* *
2260269 TGATAATCTTCATTCATTTTGTGA-TTAGGCGCTAT-AACAAAATTCTCCTCATTAGGATAAATG
127 TAATAATCTTCATTCATTTTGTGATTTA-GCGCTATAAAC-ACATTCTCCTCA-TAGGATAAATG
* * *
2260332 ATATTGATGCTATT-TTTTGCATGAAAATCTTCTT-TTTGCCCTATTTTCATTAAAATCAAAGTT
189 ATATTGATGGTTTTCTTTTGCATGAAAATCTT-TTCTTTGCCCTATTTTCCTTAAAATCAAAGTT
* * *
2260395 CATCCCTTAAATAAGGCAAGTATTGATTCTTGTAACAGTCTCCACTCTTTTTAAGATTGGGAACC
253 CATCCCTTAAATAAGGCAAGCATTGATTCTTGTAACAGTCTCCACTCTTTTCAAGATTGAGAACC
* * * * *
2260460 AAAATCACAATCCTTTCATTAGGATACTTCGCATTGAAGCCTTGGTGTCGCAAGAAAAGGTTTTC
318 AAAAACACAATCCTTTCATTAGGATACTACACATTGAAGCCTTGGGGTCGCAAGAAAAGCTTTTC
* ** * * * * * ** *
2260525 TTTCCCCTGTTTTTGATGGAATTAAAGTTTATCTCTCAACTAAGACAAACATGAATACTCATACG
383 TTGCAACAGTTTTTGATAGAATCAAAATTTACCTCTCAACTAAGACAAACACAAAAACTCATACG
*
2260590 AATCCCCATTCTTTTAAGGATTACA
448 AATCCCCAATCTTTTAAGGATTACA
*
2260615 CACCATAAACATAGTCTTCTCTTTAGGATAGATGAAATTGATGCTTTGGATTCGCAAGAAAGGCT
1 CACCATAAACATAGTCTTCTCTTTAGGATAGATGAAATTGATGCTTTGG-TTCACAAGAAAGGCT
* * * *
2260680 TTCTTCCTACCAATTTTTGCAAGATCTAAGTTTGTGCCTCTACCT-AGACAAACATGGATTCTAG
65 TTCTTCC-ACCAATTTTCGTAA-ATCTAAGTTCGTGCCTC-AACTAAGACAAACATGGATTCTAG
* *
2260744 TAATAATCTTCATTCATTTTGTGATTTTGCGCTATAAACACATTCTCCCCAGTAGGATAAATGAT
127 TAATAATCTTCATTCATTTTGTGATTTAGCGCTATAAACACATTCTCCTCA-TAGGATAAATGAT
* * *
2260809 ATTGATGGTTTTCTTTTGCTTGAAATTCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCAT
191 ATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
* * * * *
2260874 CCCTTAAGTAAGGCAAGCATTGATTCTTGTATCAGTCTCTA-TGCTTTTCAAGCTTGAGAACTAA
256 CCCTTAAATAAGGCAAGCATTGATTCTTGTAACAGTCTCCACT-CTTTTCAAGATTGAGAACCAA
* * * *
2260938 AAACACATTCCTTTCATTAGGATAC-ACAACATTGATGCTTTGGGGTTGCAAGAAAAGCTTTTCT
320 AAACACAATCCTTTCATTAGGATACTAC-ACATTGAAGCCTTGGGGTCGCAAGAAAAGCTTTTCT
* * *
2261002 TGCAACAGTTTTTGATAGAATCAAAATTTGCCTCTTAACTAAGACAAACACAAAAACTCATACTA
384 TGCAACAGTTTTTGATAGAATCAAAATTTACCTCTCAACTAAGACAAACACAAAAACTCATACGA
*
2261067 ATCCCCAATCTTTTAAGGATTACG
449 ATCCCCAATCTTTTAAGGATTACA
* * *
2261091 CACCATAAACATAGTCTTCTCTTTAGGATTGATGAAATTGATGCTTTGCTTTCACAAGAAAGACT
1 CACCATAAACATAGTCTTCTCTTTAGGATAGATGAAATTGATGCTTTG-GTTCACAAGAAAGGCT
* ** * * * * *
2261156 TTCTTGCCACCAATTTTCGTAAAATCTTAGTTCGTTTCTCAAATGAGTCAAACATGGATTATAGA
65 TTCTT-CCACCAATTTTCGT-AAATCTAAGTTCGTGCCTCAACTAAGACAAACATGGATTCTAGT
* * *
2261221 AATAATCTTTATTCATTTTGTGA-TTAGTCACTATAAACACATTCTTCTCATGAGGATAAATGAT
128 AATAATCTTCATTCATTTTGTGATTTAG-CGCTATAAACACATTCTCCTCAT-AGGATAAATGAT
* * * *
2261285 ATTGATGGTTTTCTTTTGCCTGAAAATCGTTTCTTTGCCCTATTTCCCTTAAAATCAATGTTCAT
191 ATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAT
* * * * * *
2261350 CCTTTAAATAAGGCAAGCATTGATTCTCGTAACCGTCTCCATTTTTTTCAGGATTG
256 CCCTTAAATAAGGCAAGCATTGATTCTTGTAACAGTCTCCACTCTTTTCAAGATTG
2261406 GCACCATAAG
Statistics
Matches: 683, Mismatches: 90, Indels: 35
0.85 0.11 0.04
Matches are distributed among these distances:
474 5 0.01
475 176 0.26
476 497 0.73
477 5 0.01
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.36
Consensus pattern (472 bp):
CACCATAAACATAGTCTTCTCTTTAGGATAGATGAAATTGATGCTTTGGTTCACAAGAAAGGCTT
TCTTCCACCAATTTTCGTAAATCTAAGTTCGTGCCTCAACTAAGACAAACATGGATTCTAGTAAT
AATCTTCATTCATTTTGTGATTTAGCGCTATAAACACATTCTCCTCATAGGATAAATGATATTGA
TGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTT
AAATAAGGCAAGCATTGATTCTTGTAACAGTCTCCACTCTTTTCAAGATTGAGAACCAAAAACAC
AATCCTTTCATTAGGATACTACACATTGAAGCCTTGGGGTCGCAAGAAAAGCTTTTCTTGCAACA
GTTTTTGATAGAATCAAAATTTACCTCTCAACTAAGACAAACACAAAAACTCATACGAATCCCCA
ATCTTTTAAGGATTACA
Found at i:2261573 original size:204 final size:204
Alignment explanation
Indices: 2261211--2261608 Score: 602
Period size: 204 Copynumber: 2.0 Consensus size: 204
2261201 AGTCAAACAT
* * *
2261211 GGATTATAGAAATAATCTTTATTCATTTTGTGATTAGTCACTATAAACACATTCTTCTCATGAGG
1 GGATTATAGAAATAATCTTCATTCATTTTGTGATTAGTCAATATAAACACATTCTACTCATGAGG
* *
2261276 ATAAATGATATTGATGGTTTTCTTTTGCCTGAAAATCGTTTCTTTGCCCTATTTCCCTTAAAATC
66 ATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCATTTCTTTGCCCTATTTCCCTTAAAATC
* * * * * *
2261341 AATGTTCATCCTTTAAATAAGGCAAGCATTGATTCTCGTAACCGTCTCCATTTTTTTCAGGATTG
131 AAAGCTAATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTTTTTTCAAGATTG
2261406 GCACCATAA
196 GCACCATAA
* * * *
2261415 GGATTCTAGTAATAATCTTCATTCATTTTGTGATTAG-GAGATATAAACACATTCTACTCATTAG
1 GGATTATAGAAATAATCTTCATTCATTTTGTGATTAGTCA-ATATAAACACATTCTACTCATGAG
*
2261479 GATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCATTTCTTTGCCCTATTTTCCTTAAAAT
65 GATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCATTTCTTTGCCCTATTTCCCTTAAAAT
* *
2261544 CAAAGCTAATCCCTTAAA-AAGGACAAGCATTGATTCTTGTAACATTCTCCATTTTTTTCAAGAT
130 CAAAGCTAATCCCTTAAATAAGG-CAAGCATTGATTCTCGTAACAGTCTCCATTTTTTTCAAGAT
2261608 T
194 T
2261609 TGGAACCAAA
Statistics
Matches: 174, Mismatches: 18, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
203 5 0.03
204 169 0.97
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.40
Consensus pattern (204 bp):
GGATTATAGAAATAATCTTCATTCATTTTGTGATTAGTCAATATAAACACATTCTACTCATGAGG
ATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCATTTCTTTGCCCTATTTCCCTTAAAATC
AAAGCTAATCCCTTAAATAAGGCAAGCATTGATTCTCGTAACAGTCTCCATTTTTTTCAAGATTG
GCACCATAA
Found at i:2262040 original size:681 final size:680
Alignment explanation
Indices: 2260735--2262086 Score: 1836
Period size: 681 Copynumber: 2.0 Consensus size: 680
2260725 AGACAAACAT
** * * *
2260735 GGATTCTAGTAATAATCTTCATTCATTTTGTGATTTTGCGCTATAAACACATTCTCCCCAGTAGG
1 GGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGAGATATAAACACATTCTACCCAGTAGG
* * *
2260800 ATAAATGATATTGATGGTTTTCTTTTGCTTGAAATTCTTTTCTTTACCCTATTTTCCTTAAAATC
66 ATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCATTTCTTTACCCTATTTTCCTTAAAATC
* * * * *
2260865 AAAGTTCATCCCTTAAGTAAGGCAAGCATTGATTCTTGTATCAGTCTCTATGCTTTTCAAGCTTG
131 AAAGCTAATCCCTTAAGAAAGGCAAGCATTGATTCTTGTAACAGTCTCCATGCTTTTCAAGCTTG
* * ** * *
2260930 AGAACTAAAAACACATTCCTTTCATTAGGATACACAACATTGATGCTTTGGGGTTGCAAGAAAAG
196 AGAACCAAAAACACATTCCCTTCATTAGGATACACAACATTGACACTTCGGGGTCGCAAGAAAAG
*
2260995 CTTTTCTTGCAACAGTTTTTGATAGAATCAAAATTTGCCTCTTAACTAAGACAAACACAAAAACT
261 CTTTTCTTGCAACAGTTTTTGATAGAATCAAAATTTGCCTCTCAACTAAGACAAACACAAAAACT
* **
2261060 CATACTAATCCCCAATCTTTTAAGGATTACGCACCATAAACATAGTCTTCTCTTTAGGATTGATG
326 CATACTAATCCCCAATCTTTTAAGGATTACGCACCATAAACATAGTCTTCTCTTTAGGATAGACA
* * * *
2261125 AAATTGATGCTTTGCTTTCACAAGAAAGACTTTCTTGCCACCAATTTTCGTAAAATCTTAGTTCG
391 AAATTGATACTTTGCATTCACAAGAAAGACTTTCTTGCCACCAATTTTCGTAAAATCTAAGTTCA
** *** *
2261190 TTTCTCAAATGAGTCAAACATGGATTATAGAAATAATCTTTATTCATTTTGTGATTAGTCACTAT
456 TGCCTCAAATGAAAAAAACATGGATTATAGAAATAATCTTCATTCATTTTGTGATTAGTCACTAT
* *
2261255 AAACACATTCTTCTCATGAGGATAAATGATATTGATGGTTTTCTTTTGCCTGAAAATCGTTTCTT
521 AAACACATTCTCCTCATGAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCGTTTCTT
* **
2261320 TGCCCTATTTCCCTTAAAATCAATGTTCATCCTTTAAATAAGGCAAGCATTGATTCTCGTAACCG
586 TGCCCTATTTCCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCATTGATTCTCGTAACAA
*
2261385 TCTCCATTTTTTTCAGGATTGGCACCATAA
651 TCTCCATTATTTTCAGGATTGGCACCATAA
* *
2261415 GGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGAGATATAAACACATTCTACTCATTAGG
1 GGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGAGATATAAACACATTCTACCCAGTAGG
*
2261480 ATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCATTTCTTTGCCCTATTTTCCTTAAAATC
66 ATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCATTTCTTTACCCTATTTTCCTTAAAATC
* ** *
2261545 AAAGCTAATCCCTTAA-AAAGGACAAGCATTGATTCTTGTAACATTCTCCATTTTTTTCAAGATT
131 AAAGCTAATCCCTTAAGAAAGG-CAAGCATTGATTCTTGTAACAGTCTCCATGCTTTTCAAG-CT
* *** *
2261609 TG-GAACCAAAATCACATTCCCTTCATTAGGATACTTGACATTGACACTTCGGGGTCGCAGGAAA
194 TGAGAACCAAAAACACATTCCCTTCATTAGGATACACAACATTGACACTTCGGGGTCGCAAGAAA
* * * * * * **
2261673 AGGTTTTCTTTCCACTATTTTTTGATAGAATGAAAGTTTGTTTCTCAACTAAGACAAACA-AGAA
259 AGCTTTTCTTGCAAC-AGTTTTTGATAGAATCAAAATTTGCCTCTCAACTAAGACAAACACA-AA
* * * *
2261737 TACTCATACTAATTCCCATTTTTTTAAGGATTACGCACCATAAACATAGTCTTCTCTTTAGGATA
322 AACTCATACTAATCCCCAATCTTTTAAGGATTACGCACCATAAACATAGTCTTCTCTTTAGGATA
* * * * * * **
2261802 GACAAAATTGATACTTTGGATTCGCATGAAAGGCTTT-TTTCCTTCCAAATTTT-GTAAGGTCTA
387 GACAAAATTGATACTTTGCATTCACAAGAAAGACTTTCTTGCC-ACC-AATTTTCGTAAAATCTA
* * * * * **
2261865 AGTTCATGCCTCAACTTAAAAAAACTTGGATTCTAGTAATAATCTTCATTCATTTTGTGATTTTT
450 AGTTCATGCCTCAAATGAAAAAAACATGGATTATAGAAATAATCTTCATTCATTTTGTGATTAGT
2261930 CACTATAAACACATTCTCCTCAAT-AGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATC
515 CACTATAAACACATTCTCCTC-ATGAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATC
* * * * *
2261994 TTTTCTTTGCTCTATTTTCCTTAAAATCAAAGTTTATTCC-TTAAATAAGGTAAGCATTGATTCT
579 GTTTCTTTGCCCTATTTCCCTTAAAATCAAAGTTCA-TCCTTTAAATAAGGCAAGCATTGATTCT
2262058 CGTAACAATCTCCATTATTTTCAGGATTG
643 CGTAACAATCTCCATTATTTTCAGGATTG
2262087 AGAACCAAAA
Statistics
Matches: 581, Mismatches: 83, Indels: 15
0.86 0.12 0.02
Matches are distributed among these distances:
679 4 0.01
680 235 0.40
681 331 0.57
682 11 0.02
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (680 bp):
GGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGAGATATAAACACATTCTACCCAGTAGG
ATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCATTTCTTTACCCTATTTTCCTTAAAATC
AAAGCTAATCCCTTAAGAAAGGCAAGCATTGATTCTTGTAACAGTCTCCATGCTTTTCAAGCTTG
AGAACCAAAAACACATTCCCTTCATTAGGATACACAACATTGACACTTCGGGGTCGCAAGAAAAG
CTTTTCTTGCAACAGTTTTTGATAGAATCAAAATTTGCCTCTCAACTAAGACAAACACAAAAACT
CATACTAATCCCCAATCTTTTAAGGATTACGCACCATAAACATAGTCTTCTCTTTAGGATAGACA
AAATTGATACTTTGCATTCACAAGAAAGACTTTCTTGCCACCAATTTTCGTAAAATCTAAGTTCA
TGCCTCAAATGAAAAAAACATGGATTATAGAAATAATCTTCATTCATTTTGTGATTAGTCACTAT
AAACACATTCTCCTCATGAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCGTTTCTT
TGCCCTATTTCCCTTAAAATCAAAGTTCATCCTTTAAATAAGGCAAGCATTGATTCTCGTAACAA
TCTCCATTATTTTCAGGATTGGCACCATAA
Found at i:2262472 original size:20 final size:21
Alignment explanation
Indices: 2262447--2262499 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
2262437 ATCAATACAT
*
2262447 TGTATCGATACATG-ACCA-AA
1 TGTATCGATACATGTA-AAGAA
*
2262467 TGTATCGATACTTGTAAAGAA
1 TGTATCGATACATGTAAAGAA
2262488 TGTATCGATACA
1 TGTATCGATACA
2262500 AGTCATTGGC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 14 0.50
21 14 0.50
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.30
Consensus pattern (21 bp):
TGTATCGATACATGTAAAGAA
Found at i:2268726 original size:13 final size:13
Alignment explanation
Indices: 2268704--2268741 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
2268694 CAGTATTCTC
* *
2268704 TGTATTGATACAT
1 TGTATCGATACAG
2268717 TGTATCGATACAG
1 TGTATCGATACAG
2268730 TGTATCGATACA
1 TGTATCGATACA
2268742 AAGGGTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.37
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:2270605 original size:20 final size:20
Alignment explanation
Indices: 2270580--2270619 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
2270570 GAAATTCTAT
2270580 GTTTAAGGGGGAGAAAGAAA
1 GTTTAAGGGGGAGAAAGAAA
2270600 GTTTAAGGGGGAGAAAGAAA
1 GTTTAAGGGGGAGAAAGAAA
2270620 TATGTGATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.00, G:0.40, T:0.15
Consensus pattern (20 bp):
GTTTAAGGGGGAGAAAGAAA
Found at i:2271248 original size:13 final size:13
Alignment explanation
Indices: 2271230--2271254 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2271220 CGATTGCACA
2271230 GTATCGATACATT
1 GTATCGATACATT
2271243 GTATCGATACAT
1 GTATCGATACAT
2271255 GACCAAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:2271267 original size:20 final size:21
Alignment explanation
Indices: 2271242--2271294 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
2271232 ATCGATACAT
*
2271242 TGTATCGATACATG-ACCA-AA
1 TGTATCGATACATGTA-AAGAA
*
2271262 TGTATCGATACTTGTAAAGAA
1 TGTATCGATACATGTAAAGAA
2271283 TGTATCGATACA
1 TGTATCGATACA
2271295 GGTCATTGGC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 14 0.50
21 14 0.50
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.30
Consensus pattern (21 bp):
TGTATCGATACATGTAAAGAA
Done.