Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold409
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3905031
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
File 2 of 25
Found at i:144276 original size:13 final size:13
Alignment explanation
Indices: 144258--144283 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
144248 TCCACAAAGT
144258 ATGTATCGATACA
1 ATGTATCGATACA
144271 ATGTATCGATACA
1 ATGTATCGATACA
144284 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:144286 original size:32 final size:33
Alignment explanation
Indices: 144240--144303 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
144230 TAGCCAAACT
* **
144240 TGTATCGATCCACAAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
144272 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
144304 TTGGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.57
33 12 0.43
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:150467 original size:13 final size:13
Alignment explanation
Indices: 150449--150487 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
150439 CATTTTTCTT
150449 TGTATCGATACAA
1 TGTATCGATACAA
*
150462 TGTATCGATACAC
1 TGTATCGATACAA
150475 TGTATCGATACAA
1 TGTATCGATACAA
150488 GGGGATTATA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:153055 original size:13 final size:13
Alignment explanation
Indices: 153037--153062 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
153027 TACACAAAGT
153037 ATGTATCGATACA
1 ATGTATCGATACA
153050 ATGTATCGATACA
1 ATGTATCGATACA
153063 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:153060 original size:32 final size:33
Alignment explanation
Indices: 153019--153082 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
153009 TAGCCAAACT
**
153019 TGTATCGATACACAAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
153051 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
153083 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 17 0.59
33 12 0.41
ACGTcount: A:0.42, C:0.16, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:157565 original size:42 final size:42
Alignment explanation
Indices: 157518--157629 Score: 134
Period size: 42 Copynumber: 2.7 Consensus size: 42
157508 TTTAAGCGAT
* * * *
157518 GGGCAGACGATGGATAAAGTGGTTTCTCGGGATTGAGCCGAC
1 GGGCAGACGATGGATAAAGAGGTTTCCCGAGATTGAGCCAAC
*
157560 GGGCAGACGATGGATGAAGAGGTTTCCCGAGATTGAGCCAAC
1 GGGCAGACGATGGATAAAGAGGTTTCCCGAGATTGAGCCAAC
* * ** *
157602 GAGCAGACAAAAGATAAAGAGGTCTCCC
1 GGGCAGACGATGGATAAAGAGGTTTCCC
157630 AGGTCTAAGC
Statistics
Matches: 59, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 59 1.00
ACGTcount: A:0.30, C:0.19, G:0.34, T:0.17
Consensus pattern (42 bp):
GGGCAGACGATGGATAAAGAGGTTTCCCGAGATTGAGCCAAC
Found at i:157694 original size:42 final size:42
Alignment explanation
Indices: 157595--158433 Score: 254
Period size: 42 Copynumber: 19.8 Consensus size: 42
157585 CCCGAGATTG
* * * * * *
157595 AGCCAACGAGCAGACAAAAGATAAAGAGGTCTCCCAGGTCTA
1 AGCCGACGGGCAGACGAAAGATAAAGAAGTCTCTCGGGTCTA
* *** *
157637 AGCTGATAAGCAGACGAAAGATGAAGAAGTCT-TCCGGGTCTA
1 AGCCGACGGGCAGACGAAAGATAAAGAAGTCTCT-CGGGTCTA
* * *** * *
157679 AGTCGACGGGTAGACGGTTGATAAAGGACGTCTCTCGGGAT-TG
1 AGCCGACGGGCAGACGAAAGATAAA-GAAGTCTCTCGGG-TCTA
* ** * *
157722 AGCCAACGGGCAGACGATTGATGAAGAAGTCTCTTGGGTCTA
1 AGCCGACGGGCAGACGAAAGATAAAGAAGTCTCTCGGGTCTA
* * * * *
157764 AGCCGATGGGCAAAC-AATGGATAAAGAAGT-TTTCCGAGTCTA
1 AGCCGACGGGCAGACGAA-AGATAAAGAAGTCTCT-CGGGTCTA
* * * *
157806 AGCCGACGAGTAGAC-AATGGATAAAGAGGTCTCTCGGGAT-TA
1 AGCCGACGGGCAGACGAA-AGATAAAGAAGTCTCTCGGG-TCTA
* * * *
157848 AGTCGACGGGTAGACGAAAGATAAAAAAGTCTCTTGGGTCTA
1 AGCCGACGGGCAGACGAAAGATAAAGAAGTCTCTCGGGTCTA
* * ** * * *
157890 GGTCGACGGGCAGACGATTGATGAAGAAGTCTCTTGGGTTTA
1 AGCCGACGGGCAGACGAAAGATAAAGAAGTCTCTCGGGTCTA
* * * *
157932 AGTCGACGGACAGAC-AATTA-ATAAAGGAAGTCT-TCCAGGTCTG
1 AGCCGACGGGCAGACGAA--AGATAAA-GAAGTCTCT-CGGGTCTA
* * *** * *
157975 AGCCGACGGGTAAACGGTGGATGAAGAAGTCTC-CTGGGTCTG
1 AGCCGACGGGCAGACGAAAGATAAAGAAGTCTCTC-GGGTCTA
** * ** *
158017 AGCCGATAGGCAGATGATGGATAAAGAAGTCTCTCGAGTCTA
1 AGCCGACGGGCAGACGAAAGATAAAGAAGTCTCTCGGGTCTA
* * * * ** * *
158059 GGTCGACGAGCAGATGATTGATGAGAA-AAGTCTCCCGAGTCTA
1 AGCCGACGGGCAGACGAAAGAT-A-AAGAAGTCTCTCGGGTCTA
* * * * * * * * *
158102 AGCCAATGGGTAAATGATTA-ATAACGGAAGTCTCTTGGGAT-TG
1 AGCCGACGGGCAGACGA-AAGATAA-AGAAGTCTCTCGGG-TCTA
* * * * *
158145 AGCTGACGGGAAAACGAAAGATGAAA-AAGTCTC-CTAGATCTA
1 AGCCGACGGGCAGACGAAAGAT-AAAGAAGTCTCTC-GGGTCTA
* * * * ** *
158187 AGTCAACGGGCAGAC-AATTGATAAAGGATGTCTC-CTGGGAATG
1 AGCCGACGGGCAGACGAA-AGATAAA-GAAGTCTCTC-GGGTCTA
* * * * * * * *
158230 AGCAGACAGGCAGACAAAAGATGAAGGGAAGTCTCCCAGGACTG
1 AGCCGACGGGCAGACGAAAGAT-AA-AGAAGTCTCTCGGGTCTA
* * * *
158274 AGTCGATGGGCAGACAAAAGATAAAGAAGTCTCTCGGGTCTG
1 AGCCGACGGGCAGACGAAAGATAAAGAAGTCTCTCGGGTCTA
* * * * ** * *
158316 AGTCAACGAGCAAACGATTGATAAAGGAAGTCTCCCGGGACTA
1 AGCCGACGGGCAGACGAAAGATAAA-GAAGTCTCTCGGGTCTA
* * * * * *
158359 AGCCAACGGGTAGATGAAAGATGAAGAAGTCTCTCTGGTCTG
1 AGCCGACGGGCAGACGAAAGATAAAGAAGTCTCTCGGGTCTA
** ** *
158401 AGCCGACTAGCAGACGATGGATGAAGAAGTCTC
1 AGCCGACGGGCAGACGAAAGATAAAGAAGTCTC
158434 CCGAAACTGA
Statistics
Matches: 585, Mismatches: 174, Indels: 76
0.70 0.21 0.09
Matches are distributed among these distances:
41 14 0.02
42 356 0.61
43 172 0.29
44 42 0.07
45 1 0.00
ACGTcount: A:0.33, C:0.18, G:0.30, T:0.20
Consensus pattern (42 bp):
AGCCGACGGGCAGACGAAAGATAAAGAAGTCTCTCGGGTCTA
Found at i:157754 original size:127 final size:126
Alignment explanation
Indices: 157553--157880 Score: 307
Period size: 127 Copynumber: 2.6 Consensus size: 126
157543 CTCGGGATTG
* * * * * * * * * *
157553 AGCCGACGGGCAGACGATGGATGAAGAGGTTTCCCGAGATTGAGCCAACGAGCAGACAAAAGATA
1 AGCCGACGAGTAGACAATGGATAAAGACGTCTCTCGGGATTGAGCCAACGGGCAGACGAAAGATA
* * * * *
157618 AAGAGGTCTCCCAGGTCTAAGCTGATAAGCAGACGAA-AGATGAAGAAGTCTTCCGGGTCTA
66 AAGAAGTCTCCCAGGTCTAAGCCGATAAGCAAAC-AATAGATAAAGAAGTCTTCCGAGTCTA
* * ** * **
157679 AGTCGACGGGTAGACGGTTGATAAAGGACGTCTCTCGGGATTGAGCCAACGGGCAGACGATTGAT
1 AGCCGACGAGTAGACAATGGATAAA-GACGTCTCTCGGGATTGAGCCAACGGGCAGACGAAAGAT
* *** ** * *
157744 GAAGAAGTCTCTTGGGTCTAAGCCGATGGGCAAACAATGGATAAAGAAGTTTTCCGAGTCTA
65 AAAGAAGTCTCCCAGGTCTAAGCCGATAAGCAAACAATAGATAAAGAAGTCTTCCGAGTCTA
* * * * *
157806 AGCCGACGAGTAGACAATGGATAAAGAGGTCTCTCGGGATTAAGTCGACGGGTAGACGAAAGATA
1 AGCCGACGAGTAGACAATGGATAAAGACGTCTCTCGGGATTGAGCCAACGGGCAGACGAAAGATA
*
157871 AAAAAGTCTC
66 AAGAAGTCTC
157881 TTGGGTCTAG
Statistics
Matches: 160, Mismatches: 40, Indels: 4
0.78 0.20 0.02
Matches are distributed among these distances:
126 63 0.39
127 97 0.61
ACGTcount: A:0.33, C:0.18, G:0.30, T:0.19
Consensus pattern (126 bp):
AGCCGACGAGTAGACAATGGATAAAGACGTCTCTCGGGATTGAGCCAACGGGCAGACGAAAGATA
AAGAAGTCTCCCAGGTCTAAGCCGATAAGCAAACAATAGATAAAGAAGTCTTCCGAGTCTA
Found at i:157901 original size:126 final size:127
Alignment explanation
Indices: 157660--157921 Score: 310
Period size: 126 Copynumber: 2.1 Consensus size: 127
157650 ACGAAAGATG
* * * ** * *
157660 AAGAAGTCTTCCGGGTCTAAGTCGACGGGTAGACGGTTGATAAAGGACGTCTCTCGGGATTGAGC
1 AAGAAGTCTTCCGAGTCTAAGCCGACGAGTAGACAATGGATAAAGGACGTCTCTCGGGATTAAGC
** * * *
157725 CAACGGGCAGACGATTGATGAAGAAGTCTCTTGGGTCTAAGCCGATGGGCAAACAATGGATA
66 CAACGGGCAGACGAAAGATAAAAAAGTCTCTTGGGTCTAAGCCGACGGGCAAACAATGGATA
* * *
157787 AAGAAGTTTTCCGAGTCTAAGCCGACGAGTAGACAATGGATAAA-GAGGTCTCTCGGGATTAAGT
1 AAGAAGTCTTCCGAGTCTAAGCCGACGAGTAGACAATGGATAAAGGACGTCTCTCGGGATTAAGC
* * * * * * * *
157851 CGACGGGTAGACGAAAGATAAAAAAGTCTCTTGGGTCTAGGTCGACGGGCAGACGATTGATG
66 CAACGGGCAGACGAAAGATAAAAAAGTCTCTTGGGTCTAAGCCGACGGGCAAACAATGGATA
157913 AAGAAGTCT
1 AAGAAGTCT
157922 CTTGGGTTTA
Statistics
Matches: 111, Mismatches: 24, Indels: 1
0.82 0.18 0.01
Matches are distributed among these distances:
126 74 0.67
127 37 0.33
ACGTcount: A:0.31, C:0.17, G:0.31, T:0.21
Consensus pattern (127 bp):
AAGAAGTCTTCCGAGTCTAAGCCGACGAGTAGACAATGGATAAAGGACGTCTCTCGGGATTAAGC
CAACGGGCAGACGAAAGATAAAAAAGTCTCTTGGGTCTAAGCCGACGGGCAAACAATGGATA
Found at i:157939 original size:126 final size:126
Alignment explanation
Indices: 157590--157939 Score: 308
Period size: 126 Copynumber: 2.8 Consensus size: 126
157580 GGTTTCCCGA
* * * * * *** * *** *
157590 GATTGAGCCAACGAGCAGACAAAAGATAAAGAGGTCTCCCAGGTCTAAGCTGATAAGCAGACGAA
1 GATTAAGCCAACGGGCAGACGAAAGATAAAAAAGTCTCTTGGGTCTAAGCCGACGGGCAGACGAT
* * ** *
157655 AGATGAAGAAGTCTTCCGGGTCTAAGTCGACGGGTAGACGGTTGATAAAGGACGTCTCTCGG
66 AGATGAAGAAGTCTT-TGGGTCTAAGTCGACGAGTAGACAATGGATAAAGGACGTCTCTCGG
* ** * * * * *
157717 GATTGAGCCAACGGGCAGACGATTGATGAAGAAGTCTCTTGGGTCTAAGCCGATGGGCAAACAAT
1 GATTAAGCCAACGGGCAGACGAAAGATAAAAAAGTCTCTTGGGTCTAAGCCGACGGGCAGACGAT
* * * * *
157782 GGATAAAGAAGT-TTTCCGAGTCTAAGCCGACGAGTAGACAATGGATAAA-GAGGTCTCTCGG
66 AGATGAAGAAGTCTTT--GGGTCTAAGTCGACGAGTAGACAATGGATAAAGGACGTCTCTCGG
* * * * *
157843 GATTAAGTCGACGGGTAGACGAAAGATAAAAAAGTCTCTTGGGTCTAGGTCGACGGGCAGACGAT
1 GATTAAGCCAACGGGCAGACGAAAGATAAAAAAGTCTCTTGGGTCTAAGCCGACGGGCAGACGAT
* *
157908 TGATGAAGAAGTCTCTTGGGTTTAAGTCGACG
66 AGATGAAGAAGTCT-TTGGGTCTAAGTCGACG
157940 GACAGACAAT
Statistics
Matches: 176, Mismatches: 43, Indels: 9
0.77 0.19 0.04
Matches are distributed among these distances:
126 87 0.49
127 87 0.49
128 2 0.01
ACGTcount: A:0.32, C:0.17, G:0.31, T:0.21
Consensus pattern (126 bp):
GATTAAGCCAACGGGCAGACGAAAGATAAAAAAGTCTCTTGGGTCTAAGCCGACGGGCAGACGAT
AGATGAAGAAGTCTTTGGGTCTAAGTCGACGAGTAGACAATGGATAAAGGACGTCTCTCGG
Found at i:158080 original size:169 final size:168
Alignment explanation
Indices: 157731--158092 Score: 397
Period size: 169 Copynumber: 2.1 Consensus size: 168
157721 GAGCCAACGG
* * * *
157731 GCAGACGATTGATGAAGAAGTCTCTTGGGTCTAAGCCGATGGGCAAACAATGGATAAAGAAGTTT
1 GCAGACGATTGATGAAGAAGTCTCTTGGGTCTAAGCCGACGGACAAACAATGAATAAAGAAGTCT
* * * * *
157796 TCCGAGTCTAAGCCGACGAGTAGACAATGGATAAAGAGGTCTCTCGGGATTAAGTCGACGGGTAG
66 TCCGAGTCTAAGCCGACGAGTAAACAATGGATAAAGAAGTCTCTCGGGATTAAGCCGACAGGCAG
* * *
157861 ACGAAAGATAAAAAAGTCTCTTGGGTCTAGGTCGACGG
131 ACGAAAGATAAAAAAGTCTCTCGAGTCTAGGTCGACGA
* * * *
157899 GCAGACGATTGATGAAGAAGTCTCTTGGGTTTAAGTCGACGGACAGACAATTAATAAAGGAAGTC
1 GCAGACGATTGATGAAGAAGTCTCTTGGGTCTAAGCCGACGGACAAACAATGAATAAA-GAAGTC
* * ** * * *
157964 TTCC-AGGTCTGAGCCGACGGGTAAACGGTGGATGAAGAAGTCTC-CTGGG-TCTGAGCCGATAG
65 TTCCGA-GTCTAAGCCGACGAGTAAACAATGGATAAAGAAGTCTCTC-GGGAT-TAAGCCGACAG
* ** *
158026 GCAGATGATGGATAAAGAAGTCTCTCGAGTCTAGGTCGACGA
127 GCAGACGAAAGATAAAAAAGTCTCTCGAGTCTAGGTCGACGA
* *
158068 GCAGATGATTGATGAGAAAAGTCTC
1 GCAGACGATTGATGA-AGAAGTCTC
158093 CCGAGTCTAA
Statistics
Matches: 160, Mismatches: 29, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
168 54 0.34
169 98 0.61
170 8 0.05
ACGTcount: A:0.31, C:0.16, G:0.31, T:0.22
Consensus pattern (168 bp):
GCAGACGATTGATGAAGAAGTCTCTTGGGTCTAAGCCGACGGACAAACAATGAATAAAGAAGTCT
TCCGAGTCTAAGCCGACGAGTAAACAATGGATAAAGAAGTCTCTCGGGATTAAGCCGACAGGCAG
ACGAAAGATAAAAAAGTCTCTCGAGTCTAGGTCGACGA
Found at i:158466 original size:42 final size:42
Alignment explanation
Indices: 158370--158469 Score: 105
Period size: 42 Copynumber: 2.4 Consensus size: 42
158360 GCCAACGGGT
* ** *
158370 AGATGAAAGATGAAGAAGTCTCTCTGGTCTGAGCCGACTAGC
1 AGATGAAAGATGAAGAAGTCTCTCCGAACTGAGCAGACTAGC
* **
158412 AGACGATGGATGAAGAAGTCTC-CCGAAACTGAGCAGAC-AGGC
1 AGATGAAAGATGAAGAAGTCTCTCCG-AACTGAGCAGACTA-GC
158454 AGATGAAAGATGAAGA
1 AGATGAAAGATGAAGA
158470 TTGGAATGAG
Statistics
Matches: 46, Mismatches: 10, Indels: 4
0.77 0.17 0.07
Matches are distributed among these distances:
41 3 0.07
42 43 0.93
ACGTcount: A:0.37, C:0.17, G:0.30, T:0.16
Consensus pattern (42 bp):
AGATGAAAGATGAAGAAGTCTCTCCGAACTGAGCAGACTAGC
Found at i:158467 original size:84 final size:85
Alignment explanation
Indices: 158290--158469 Score: 220
Period size: 85 Copynumber: 2.1 Consensus size: 85
158280 TGGGCAGACA
* * * **
158290 AAAGATAAAGAAGTCTCTCGGGTCTGAGTCAACGAGCAAACGATTGATAAAGGAAGTCTCCCGGG
1 AAAGATGAAGAAGTCTCTCGGGTCTGAGCCAACGAGCAAACGATGGATAAAGGAAGTCTCCCGAA
* *
158355 ACTAAGCCAACGGGTAGATG
66 ACTAAGCCAACAGGCAGATG
* * * * *
158375 AAAGATGAAGAAGTCTCTCTGGTCTGAGCCGACTAGCAGACGATGGATGAA-GAAGTCTCCCGAA
1 AAAGATGAAGAAGTCTCTCGGGTCTGAGCCAACGAGCAAACGATGGATAAAGGAAGTCTCCCGAA
*
158439 ACTGAG-CAGACAGGCAGATG
66 ACTAAGCCA-ACAGGCAGATG
158459 AAAGATGAAGA
1 AAAGATGAAGA
158470 TTGGAATGAG
Statistics
Matches: 81, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
83 2 0.02
84 36 0.44
85 43 0.53
ACGTcount: A:0.36, C:0.18, G:0.29, T:0.17
Consensus pattern (85 bp):
AAAGATGAAGAAGTCTCTCGGGTCTGAGCCAACGAGCAAACGATGGATAAAGGAAGTCTCCCGAA
ACTAAGCCAACAGGCAGATG
Found at i:168152 original size:147 final size:147
Alignment explanation
Indices: 167885--168179 Score: 565
Period size: 147 Copynumber: 2.0 Consensus size: 147
167875 TTGCAGTGCT
167885 TCATTGTCGACCTTTTCTTTGCCCAAAAGGTGTACTCGAGCTTCCAAATGCTCACATTCTTTCAG
1 TCATTGTCGACCTTTTCTTTGCCCAAAAGGTGTACTCGAGCTTCCAAATGCTCACATTCTTTCAG
167950 CTGACCAATAAAGCCATTTGGGCTTTAGTGAATTTTCCTTCATTAGCTTGAGCTTTATCCTTCCA
66 CTGACCAATAAAGCCATTTGGGCTTTAGTGAATTTTCCTTCATTAGCTTGAGCTTTATCCTTCCA
168015 TGAGTTCAGCTCCTGAG
131 TGAGTTCAGCTCCTGAG
*
168032 TCATTGTCGACCTTTTCTTTGCCCAAAAGGTGTACTCGAGCTTCCAAATGCTCACATTCTTT-TG
1 TCATTGTCGACCTTTTCTTTGCCCAAAAGGTGTACTCGAGCTTCCAAATGCTCACATTCTTTCAG
168096 ACTGACCAATAAAGCCATTTGGGCTTTAGTGAATTTTCCTTCATTAGCTTGAGCTTTATCCTTCC
66 -CTGACCAATAAAGCCATTTGGGCTTTAGTGAATTTTCCTTCATTAGCTTGAGCTTTATCCTTCC
168161 ATGAGTTCAGCTCCTGAG
130 ATGAGTTCAGCTCCTGAG
168179 T
1 T
168180 GAGAGTTGCA
Statistics
Matches: 146, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
146 1 0.01
147 145 0.99
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.37
Consensus pattern (147 bp):
TCATTGTCGACCTTTTCTTTGCCCAAAAGGTGTACTCGAGCTTCCAAATGCTCACATTCTTTCAG
CTGACCAATAAAGCCATTTGGGCTTTAGTGAATTTTCCTTCATTAGCTTGAGCTTTATCCTTCCA
TGAGTTCAGCTCCTGAG
Found at i:174376 original size:19 final size:18
Alignment explanation
Indices: 174352--174414 Score: 73
Period size: 19 Copynumber: 3.7 Consensus size: 18
174342 ATTCAGTAAA
174352 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGT-T
174371 TGTATCGATAC--AA---
1 TGTATCGATACATAAGTT
174384 TGTATCGATACATAAGTTT
1 TGTATCGATACATAAG-TT
174403 TGTATCGATACA
1 TGTATCGATACA
174415 ATGTATCGCT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 11 0.29
15 2 0.05
17 2 0.05
19 23 0.61
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.37
Consensus pattern (18 bp):
TGTATCGATACATAAGTT
Found at i:174389 original size:13 final size:13
Alignment explanation
Indices: 174371--174395 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
174361 ACATAAGTGT
174371 TGTATCGATACAA
1 TGTATCGATACAA
174384 TGTATCGATACA
1 TGTATCGATACA
174396 TAAGTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:174391 original size:32 final size:32
Alignment explanation
Indices: 174350--174422 Score: 137
Period size: 32 Copynumber: 2.3 Consensus size: 32
174340 ACATTCAGTA
174350 AATGTATCGATACATAAGTGTTGTATCGATAC
1 AATGTATCGATACATAAGTGTTGTATCGATAC
*
174382 AATGTATCGATACATAAGTTTTGTATCGATAC
1 AATGTATCGATACATAAGTGTTGTATCGATAC
174414 AATGTATCG
1 AATGTATCG
174423 CTAGGAAGCT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 40 1.00
ACGTcount: A:0.34, C:0.12, G:0.18, T:0.36
Consensus pattern (32 bp):
AATGTATCGATACATAAGTGTTGTATCGATAC
Found at i:174471 original size:20 final size:20
Alignment explanation
Indices: 174446--174512 Score: 85
Period size: 20 Copynumber: 3.7 Consensus size: 20
174436 GCCAAGGAAA
174446 TGTATCGATACATTTTTCTG
1 TGTATCGATACATTTTTCTG
174466 TGTATCGATACA------T-
1 TGTATCGATACATTTTTCTG
174479 TGTATCGATACATTTTTCTG
1 TGTATCGATACATTTTTCTG
174499 TGTATCGATACATT
1 TGTATCGATACATT
174513 GTATCGATAC
Statistics
Matches: 40, Mismatches: 0, Indels: 14
0.74 0.00 0.26
Matches are distributed among these distances:
13 12 0.30
14 1 0.03
19 1 0.03
20 26 0.65
ACGTcount: A:0.24, C:0.15, G:0.15, T:0.46
Consensus pattern (20 bp):
TGTATCGATACATTTTTCTG
Found at i:174484 original size:13 final size:13
Alignment explanation
Indices: 174466--174524 Score: 60
Period size: 13 Copynumber: 5.0 Consensus size: 13
174456 CATTTTTCTG
174466 TGTATCGATACAT
1 TGTATCGATACAT
174479 TGTATCGATACAT
1 TGTATCGATACAT
174492 T-T-T---T-C-T
1 TGTATCGATACAT
174498 GTGTATCGATACAT
1 -TGTATCGATACAT
174512 TGTATCGATACAT
1 TGTATCGATACAT
174525 CTATTCTTTG
Statistics
Matches: 38, Mismatches: 0, Indels: 16
0.70 0.00 0.30
Matches are distributed among these distances:
6 1 0.03
7 2 0.05
8 2 0.05
9 1 0.03
11 1 0.03
12 2 0.05
13 28 0.74
14 1 0.03
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.42
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:174488 original size:33 final size:33
Alignment explanation
Indices: 174446--174545 Score: 173
Period size: 33 Copynumber: 3.0 Consensus size: 33
174436 GCCAAGGAAA
174446 TGTATCGATACATTTTTCTGTGTATCGATACAT
1 TGTATCGATACATTTTTCTGTGTATCGATACAT
174479 TGTATCGATACATTTTTCTGTGTATCGATACAT
1 TGTATCGATACATTTTTCTGTGTATCGATACAT
* *
174512 TGTATCGATACATCTATTCTTTGTATCGATACAT
1 TGTATCGATACAT-TTTTCTGTGTATCGATACAT
174546 CTATGAAGTT
Statistics
Matches: 64, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
33 46 0.72
34 18 0.28
ACGTcount: A:0.25, C:0.16, G:0.14, T:0.45
Consensus pattern (33 bp):
TGTATCGATACATTTTTCTGTGTATCGATACAT
Found at i:174587 original size:20 final size:20
Alignment explanation
Indices: 174562--174617 Score: 103
Period size: 20 Copynumber: 2.8 Consensus size: 20
174552 AGTTTACCCA
174562 GATGTATCGATACATTTTAC
1 GATGTATCGATACATTTTAC
174582 GATGTATCGATACATTTTAC
1 GATGTATCGATACATTTTAC
*
174602 AATGTATCGATACATT
1 GATGTATCGATACATT
174618 CAAGCATTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.39
Consensus pattern (20 bp):
GATGTATCGATACATTTTAC
Found at i:176965 original size:52 final size:52
Alignment explanation
Indices: 176903--177284 Score: 269
Period size: 52 Copynumber: 7.3 Consensus size: 52
176893 CAATTGTTTA
*
176903 TAATCGGGGATACTCCAATCCCGGTTTTATTTTCAAAACACCAATTTTCCTT
1 TAATCGGGGATACTCCAATCCCGATTTTATTTTCAAAACACCAATTTTCCTT
*
176955 TAATCAGGGATACTCCAATCCCGATTTTATTTTCAAAACACCAATTTTCCTT
1 TAATCGGGGATACTCCAATCCCGATTTTATTTTCAAAACACCAATTTTCCTT
* * * * *
177007 TAATCGGGGATACTCCAA-CTCCGATTTTATTTCCAAAAAATACCGATTTTTC-A
1 TAATCGGGGATACTCCAATC-CCGATTTTATTTTC--AAAACACCAATTTTCCTT
* * * * ***** * * ** *
177060 CAAGCGAGGATACTCCAA-CCTCGTTATTTCATCGGGGATACTCCAA--CCCCAT
1 TAATCGGGGATACTCCAATCC-CG--ATTTTATTTTCAAAACACCAATTTTCCTT
* ** * * * *
177112 TACCTCCGAGGGGATACTCCAATCCCGGCTTTATTTCCAAAATATCAA-TTT-CTCA
1 TA-AT-C--GGGGATACTCCAATCCCGATTTTATTTTCAAAACACCAATTTTCCT-T
* * * * * *
177167 TAATCGGGGATACTCCAACCCCGGTTTTA-TCTCTAAAACACTAATTTTTC-A
1 TAATCGGGGATACTCCAATCCCGATTTTATTTTC-AAAACACCAATTTTCCTT
*
177218 TAATCGGGGATACCCCAATCCCGATTTTATTTTCAAAACACCAATTTTCCTT
1 TAATCGGGGATACTCCAATCCCGATTTTATTTTCAAAACACCAATTTTCCTT
*
177270 TCATCGGGGATACTC
1 TAATCGGGGATACTC
177285 TAACCCCATT
Statistics
Matches: 249, Mismatches: 62, Indels: 38
0.71 0.18 0.11
Matches are distributed among these distances:
50 2 0.01
51 72 0.29
52 101 0.41
53 25 0.10
54 25 0.10
55 8 0.03
56 14 0.06
57 2 0.01
ACGTcount: A:0.29, C:0.27, G:0.12, T:0.32
Consensus pattern (52 bp):
TAATCGGGGATACTCCAATCCCGATTTTATTTTCAAAACACCAATTTTCCTT
Found at i:177182 original size:51 final size:50
Alignment explanation
Indices: 177121--177264 Score: 180
Period size: 51 Copynumber: 2.8 Consensus size: 50
177111 TTACCTCCGA
* *
177121 GGGGATACTCCAATCCCGGCTTTATTTCCAAAATATCAATTTCTCATAATC
1 GGGGATACTCCAATCCCGGTTTTATTTCCAAAACA-CAATTTCTCATAATC
* * * *
177172 GGGGATACTCCAACCCCGGTTTTATCTCTAAAACACTAATTTTTCATAATC
1 GGGGATACTCCAATCCCGGTTTTATTTCCAAAACAC-AATTTCTCATAATC
* * *
177223 GGGGATACCCCAATCCCGATTTTATTTTCAAAACACCAATTT
1 GGGGATACTCCAATCCCGGTTTTATTTCCAAAACA-CAATTT
177265 TCCTTTCATC
Statistics
Matches: 79, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
50 1 0.01
51 77 0.97
52 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.33
Consensus pattern (50 bp):
GGGGATACTCCAATCCCGGTTTTATTTCCAAAACACAATTTCTCATAATC
Found at i:177344 original size:131 final size:132
Alignment explanation
Indices: 177174--177424 Score: 332
Period size: 131 Copynumber: 1.9 Consensus size: 132
177164 TCATAATCGG
* * *
177174 GGATACTCCAACCCCGGTTTTATCTCTAAAACACTAATTTTTCATAATCG-GG-GATACCCCAAT
1 GGATACTCCAACCCCGGCTTTATCTCCAAAACACTAATTTTTCATAATCGAGGAGATACCCCAAC
* ** *
177237 CCCGATTTTAT-TTTCAAAACACCAATTTTCCTTTC-ATCGGGGATACTCTAACCCCATTGCCTC
66 CCCGATTTTATCTCT-AAAACACCAATTTT--TCACAATCGGGGATACTCCAACCCCATTGCCTC
177300 CGAGA
128 CGAGA
* * *
177305 GGATACTCCAACCCCGGCTTTATTTCCAAAATA-TCAATTTTTCATAATCGAGGAGATACTCCAA
1 GGATACTCCAACCCCGGCTTTATCTCCAAAACACT-AATTTTTCATAATCGAGGAGATACCCCAA
*
177369 CCCCGATTTTATCTCTAAAACACTAATTTTTCACAATCGGGGATACTCCAACCCCA
65 CCCCGATTTTATCTCTAAAACACCAATTTTTCACAATCGGGGATACTCCAACCCCA
177425 GTTTTATTTT
Statistics
Matches: 104, Mismatches: 11, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
130 1 0.01
131 46 0.44
132 22 0.21
133 33 0.32
134 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.12, T:0.30
Consensus pattern (132 bp):
GGATACTCCAACCCCGGCTTTATCTCCAAAACACTAATTTTTCATAATCGAGGAGATACCCCAAC
CCCGATTTTATCTCTAAAACACCAATTTTTCACAATCGGGGATACTCCAACCCCATTGCCTCCGA
GA
Found at i:177430 original size:51 final size:50
Alignment explanation
Indices: 177300--177449 Score: 151
Period size: 53 Copynumber: 2.9 Consensus size: 50
177290 CCATTGCCTC
* * * *
177300 CGAGAGGATACTCCAACCCCGGCTTTATTTCCAAAATA-TCAATTTTTCATAAT
1 CGAG-GGATACTCCAACCCC-GTTTTA-TTCTAAAACACT-AATTTTTCACAAT
177353 CGAGGAGATACTCCAACCCCGATTTTATCTCTAAAACACTAATTTTTCACAAT
1 CGAGG-GATACTCCAACCCCG-TTTTAT-TCTAAAACACTAATTTTTCACAAT
* *
177406 CG-GGGATACTCCAACCCCAGTTTTATTTTCAAAACACCAATTTT
1 CGAGGGATACTCCAACCCC-GTTTTATTCT-AAAACACTAATTTT
177450 CCTTTCATCG
Statistics
Matches: 85, Mismatches: 6, Indels: 14
0.81 0.06 0.13
Matches are distributed among these distances:
50 2 0.02
51 33 0.39
52 6 0.07
53 43 0.51
54 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.11, T:0.31
Consensus pattern (50 bp):
CGAGGGATACTCCAACCCCGTTTTATTCTAAAACACTAATTTTTCACAAT
Found at i:177453 original size:184 final size:181
Alignment explanation
Indices: 177086--177555 Score: 710
Period size: 184 Copynumber: 2.6 Consensus size: 181
177076 AACCTCGTTA
*
177086 TTTCATCGGGGATACTCCAACCCCATTACCTCCGAGGGGATACTCCAATCCCGGCTTTATTTCCA
1 TTTCATCGGGGATACT-CAACCCCATTACCTCCGAGGGGATACTCCAACCCCGGCTTTATTTCCA
*
177151 AAATATCAATTTCTCATAATCGGGGATACTCCAACCCCGGTTTTATCTCTAAAACACTAATTTTT
65 AAATATCAATTTCTCATAATCGGGGATACTCCAACCCCGATTTTATCTCTAAAACACTAATTTTT
* *
177216 CATAATCGGGGATACCCCAATCCCGATTTTATTTTCAAAACACCAATTTTCC
130 CACAATCGGGGATACCCCAACCCCGATTTTATTTTCAAAACACCAATTTTCC
* *
177268 TTTCATCGGGGATACTCTAACCCCATTGCCTCCGAGAGGATACTCCAACCCCGGCTTTATTTCCA
1 TTTCATCGGGGATACTC-AACCCCATTACCTCCGAGGGGATACTCCAACCCCGGCTTTATTTCCA
*
177333 AAATATCAATTTTTCATAATCGAGGAGATACTCCAACCCCGATTTTATCTCTAAAACACTAATTT
65 AAATATCAATTTCTCATAATCG-GG-GATACTCCAACCCCGATTTTATCTCTAAAACACTAATTT
*
177398 TTCACAATCGGGGATACTCCAACCCC-AGTTTTATTTTCAAAACACCAATTTTCC
128 TTCACAATCGGGGATACCCCAACCCCGA-TTTTATTTTCAAAACACCAATTTTCC
* * * ** *
177452 TTTCATCGGGGATACTCCACCTCGTTATTTTCGAGGGGATACTCCAACCCCCGGCTTTA-TTCCT
1 TTTCATCGGGGATACTCAACCCCATTACCTCCGAGGGGATACTCCAA-CCCCGGCTTTATTTCC-
** *
177516 AAAATATTGATTTCTCATAATCGGGGATACTCCAATCCCG
64 AAAATATCAATTTCTCATAATCGGGGATACTCCAACCCCG
177556 TTATTTTCGA
Statistics
Matches: 262, Mismatches: 20, Indels: 12
0.89 0.07 0.04
Matches are distributed among these distances:
181 1 0.00
182 95 0.36
183 31 0.12
184 135 0.52
ACGTcount: A:0.27, C:0.28, G:0.13, T:0.31
Consensus pattern (181 bp):
TTTCATCGGGGATACTCAACCCCATTACCTCCGAGGGGATACTCCAACCCCGGCTTTATTTCCAA
AATATCAATTTCTCATAATCGGGGATACTCCAACCCCGATTTTATCTCTAAAACACTAATTTTTC
ACAATCGGGGATACCCCAACCCCGATTTTATTTTCAAAACACCAATTTTCC
Found at i:177576 original size:80 final size:79
Alignment explanation
Indices: 177456--177742 Score: 332
Period size: 79 Copynumber: 3.6 Consensus size: 79
177446 TTTTCCTTTC
* *
177456 ATCGGGGATACTCC-A-CCTCGTTATTTTCGAGGGGATACTCCAACCCCCGGCTTTATTCCTAAA
1 ATCGGGGATACTCCAATCC-CGTTATTTTCAAGGGGATACTCCAA-CCCCGGATTTATTCCTAAA
* *
177519 ATATTGATTTCTCATA
64 ATATCGATTTTTCATA
* * * *
177535 ATCGGGGATACTCCAATCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAAC
1 ATCGGGGATACTCCAATCCCGTTATTTTCAAGGGGATACTCCAACCCCGGATTTATTCCTAAAAT
*
177600 ATCAATTTTTCATA
66 ATCGATTTTTCATA
* ** * * *
177614 ATCGGGAATACTTTAATCCCATTATTTCCAAGGGGATACTCCAATCCC-GATTTCATTTCC--AA
1 ATCGGGGATACTCCAATCCCGTTATTTTCAAGGGGATACTCCAACCCCGGATTT-A-TTCCTAAA
*
177676 ATCATCGATCTTTTCACA
64 AT-ATCGAT-TTTTCATA
*
177694 ATCGGGGATACTCCAACCCCGTTATTTTCAAGGGGATACTCCAACCCCG
1 ATCGGGGATACTCCAATCCCGTTATTTTCAAGGGGATACTCCAACCCCG
177743 TTATTTTCAA
Statistics
Matches: 176, Mismatches: 25, Indels: 12
0.83 0.12 0.06
Matches are distributed among these distances:
78 7 0.04
79 90 0.51
80 77 0.44
81 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.15, T:0.32
Consensus pattern (79 bp):
ATCGGGGATACTCCAATCCCGTTATTTTCAAGGGGATACTCCAACCCCGGATTTATTCCTAAAAT
ATCGATTTTTCATA
Found at i:177737 original size:28 final size:28
Alignment explanation
Indices: 177697--177775 Score: 158
Period size: 28 Copynumber: 2.8 Consensus size: 28
177687 TTTCACAATC
177697 GGGGATACTCCAACCCCGTTATTTTCAA
1 GGGGATACTCCAACCCCGTTATTTTCAA
177725 GGGGATACTCCAACCCCGTTATTTTCAA
1 GGGGATACTCCAACCCCGTTATTTTCAA
177753 GGGGATACTCCAACCCCGTTATT
1 GGGGATACTCCAACCCCGTTATT
177776 ATCTCCAAAA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 51 1.00
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (28 bp):
GGGGATACTCCAACCCCGTTATTTTCAA
Found at i:182107 original size:12 final size:12
Alignment explanation
Indices: 182067--182130 Score: 51
Period size: 12 Copynumber: 5.1 Consensus size: 12
182057 AAATTAACTT
182067 TATAATTATTTACA
1 TATAATTATTT--A
* *
182081 TAATTATTATTTT
1 T-ATAATTATTTA
182094 TATCAAATTATTTA
1 TAT--AATTATTTA
182108 TATAATTATTTA
1 TATAATTATTTA
182120 -ATAA-TATTTA
1 TATAATTATTTA
182130 T
1 T
182131 TTTTAGTTTA
Statistics
Matches: 42, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
10 6 0.14
11 4 0.10
12 11 0.26
13 1 0.02
14 11 0.26
15 9 0.21
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (12 bp):
TATAATTATTTA
Found at i:182251 original size:25 final size:26
Alignment explanation
Indices: 182211--182263 Score: 74
Period size: 25 Copynumber: 2.1 Consensus size: 26
182201 AATAATCATA
182211 TAAATAAAATTATTAA-TA-TATTTT
1 TAAATAAAATTATTAATTACTATTTT
*
182235 TAAACTAATATTATTAATTACTATTTT
1 TAAA-TAAAATTATTAATTACTATTTT
182262 TA
1 TA
182264 TTTTTATTTC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
24 4 0.16
25 11 0.44
26 2 0.08
27 8 0.32
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (26 bp):
TAAATAAAATTATTAATTACTATTTT
Found at i:183262 original size:15 final size:14
Alignment explanation
Indices: 183238--183281 Score: 52
Period size: 15 Copynumber: 3.0 Consensus size: 14
183228 TATATATATG
183238 AAAATATAAATTTT
1 AAAATATAAATTTT
183252 AAAATTATAAATCTTT
1 AAAA-TATAAAT-TTT
**
183268 ATTATATAAATTTT
1 AAAATATAAATTTT
183282 TTTAAAATCA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
14 7 0.27
15 14 0.54
16 5 0.19
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (14 bp):
AAAATATAAATTTT
Found at i:183442 original size:28 final size:29
Alignment explanation
Indices: 183394--183467 Score: 75
Period size: 28 Copynumber: 2.6 Consensus size: 29
183384 TAATTGTGAA
183394 AAAAAAT-TAATACAAAA-GAAAT-TAGTTTT
1 AAAAAATATAA-A-AAAATGAAATAT-GTTTT
* *
183423 AAAAAATA-AAATAAATGAAATATTTTTT
1 AAAAAATATAAAAAAATGAAATATGTTTT
183451 AAAAAATATAAAAAAAT
1 AAAAAATATAAAAAAAT
183468 TAAAATCTTA
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
27 3 0.08
28 18 0.47
29 17 0.45
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (29 bp):
AAAAAATATAAAAAAATGAAATATGTTTT
Found at i:184916 original size:14 final size:14
Alignment explanation
Indices: 184891--184925 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
184881 TAATTATTCG
184891 AATAAAAATAAT-A
1 AATAAAAATAATAA
184904 AATAAAGAATAATAA
1 AATAAA-AATAATAA
184919 AATAAAA
1 AATAAAA
184926 TTACGATTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
13 6 0.30
14 7 0.35
15 7 0.35
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.20
Consensus pattern (14 bp):
AATAAAAATAATAA
Found at i:187032 original size:79 final size:79
Alignment explanation
Indices: 186929--187519 Score: 521
Period size: 79 Copynumber: 7.5 Consensus size: 79
186919 TCGAGTACAT
* * * * * * * * *
186929 TCCCTGATGGTGAAAAATCAATATTTTGGAAATAAAATCAGAGTTTGAGTATCTCCTCGAAAATA
1 TCCCCGATTGTGAAAAATCGATGTTTTGGAAATAAAACCGGAGTTAGAGTATCCCCTCAAAAATA
*
186994 ACGGGGTTAGAGTA
66 ATGGGGTTAGAGTA
* * * * * * *
187008 TCCCCGATTATGAAAAATCGATATTTTAGAAATAAAGCC-GAGGTTAGAGCATCTCTTCAAAAAT
1 TCCCCGATTGTGAAAAATCGATGTTTTGGAAATAAAACCGGA-GTTAGAGTATCCCCTCAAAAAT
* * *
187072 AACGGGGCTATAGTA
65 AATGGGGTTAGAGTA
* * *
187087 TCCCCAATTGTGAAAAATC-AGTGTTTTGGAAATAAAACC-GAGGTTGGAGTATCTCCC-AAAAA
1 TCCCCGATTGTGAAAAATCGA-TGTTTTGGAAATAAAACCGGA-GTTAGAGTATC-CCCTCAAAA
* *
187149 ATAATAGGGTTGGAGTA
63 ATAATGGGGTTAGAGTA
* * * * * *
187166 TCCCTGATTGTAAAAAATCGGTGTTTTGGAAATAAAACCGGGGTTGGAGGATCCCCTCAAAAATA
1 TCCCCGATTGTGAAAAATCGATGTTTTGGAAATAAAACCGGAGTTAGAGTATCCCCTCAAAAATA
*
187231 ATGGGGTTGGAGTA
66 ATGGGGTTAGAGTA
* * * * *
187245 TCCCTGATTGTGAAAAAATTGGTGTTTTGAAAATAAAACCGGGGTTAGAGTATCCCCTCAAAAAT
1 TCCCCGATTGTG-AAAAATCGATGTTTTGGAAATAAAACCGGAGTTAGAGTATCCCCTCAAAAAT
*
187310 AATGGGATTAGAGTA
65 AATGGGGTTAGAGTA
* * * * * **
187325 TTCCCGATTATGAAAAATCTG-TGTTTTGAAAATAAAACCGGGGTTAAAGTATCCTTTCAAAAAT
1 TCCCCGATTGTGAAAAATC-GATGTTTTGGAAATAAAACCGGAGTTAGAGTATCCCCTCAAAAAT
*
187389 AATGAGGTTAGAGTA
65 AATGGGGTTAGAGTA
* * * * * * * * *
187404 TCCCCGATGGCGAAAAATTGATGTTTTGAAAATATAATCAGGA-TTGGAGTATCCCCTTAGAAAT
1 TCCCCGATTGTGAAAAATCGATGTTTTGGAAATA-AAACCGGAGTTAGAGTATCCCCTCAAAAAT
**
187468 AACAGGGTTAGAGTA
65 AATGGGGTTAGAGTA
* * *
187483 TCCCCGA-TGATAAAAAATCGATATTTTAGAAATAAAA
1 TCCCCGATTG-TGAAAAATCGATGTTTTGGAAATAAAA
187520 ACATGAATGA
Statistics
Matches: 424, Mismatches: 77, Indels: 23
0.81 0.15 0.04
Matches are distributed among these distances:
78 10 0.02
79 336 0.79
80 78 0.18
ACGTcount: A:0.37, C:0.14, G:0.21, T:0.28
Consensus pattern (79 bp):
TCCCCGATTGTGAAAAATCGATGTTTTGGAAATAAAACCGGAGTTAGAGTATCCCCTCAAAAATA
ATGGGGTTAGAGTA
Found at i:187226 original size:158 final size:156
Alignment explanation
Indices: 186929--187519 Score: 578
Period size: 158 Copynumber: 3.7 Consensus size: 156
186919 TCGAGTACAT
* * * * * * * * *
186929 TCCCTGATGGTGAAAAATCAATATTTTGGAAATAAAATCAGAGTTTGAGTATCTCCTCGAAAATA
1 TCCCCGATTGTGAAAAATCAGTGTTTTGAAAATAAAACCAG-GTTGGAGTATCCCCT-AAAAATA
* * * *
186994 ACGGGGTTAGAGTATCCCCGATTATGAAAAATCGATATTTTAGAAATAAAGCCGAGGTTAGAGCA
64 ACAGGGTTAGAGTATCCCCGATTATAAAAAATCGATATTTTAGAAATAAAACCGGGGTTAGAGCA
* * * *
187059 TCTCTTCAAAAATAACGGGGCTATAGTA
129 TCCCTTCAAAAATAATGGGGTTAGAGTA
* * *
187087 TCCCCAATTGTGAAAAATCAGTGTTTTGGAAATAAAACCGAGGTTGGAGTATCTCCCAAAAAATA
1 TCCCCGATTGTGAAAAATCAGTGTTTTGAAAATAAAACC-AGGTTGGAGTATC-CCCTAAAAATA
* * * * * * * * *
187152 ATAGGGTTGGAGTATCCCTGATTGTAAAAAATCGGTGTTTTGGAAATAAAACCGGGGTTGGAGGA
64 ACAGGGTTAGAGTATCCCCGATTATAAAAAATCGATATTTTAGAAATAAAACCGGGGTTAGAGCA
* *
187217 TCCCCTCAAAAATAATGGGGTTGGAGTA
129 TCCCTTCAAAAATAATGGGGTTAGAGTA
* ** * *
187245 TCCCTGATTGTGAAAAAATTGGTGTTTTGAAAATAAAACCGGGGTTAGAGTATCCCCTCAAAAAT
1 TCCCCGATTGTG-AAAAATCAGTGTTTTGAAAATAAAACC-AGGTTGGAGTATCCCCT-AAAAAT
* * * * *
187310 AA-TGGGATTAGAGTATTCCCGATTATGAAAAATCTG-TGTTTT-GAAAATAAAACCGGGGTTAA
63 AACAGGG-TTAGAGTATCCCCGATTATAAAAAATC-GATATTTTAG-AAATAAAACCGGGGTTAG
* * *
187372 AGTATCCTTTCAAAAATAATGAGGTTAGAGTA
125 AGCATCCCTTCAAAAATAATGGGGTTAGAGTA
* * * * * *
187404 TCCCCGATGGCGAAAAAT-TGATGTTTTGAAAATATAATCAGGATTGGAGTATCCCCTTAGAAAT
1 TCCCCGATTGTGAAAAATCAG-TGTTTTGAAAATAAAACCAGG-TTGGAGTATCCCC-TAAAAAT
*
187468 AACAGGGTTAGAGTATCCCCGATGATAAAAAATCGATATTTTAGAAATAAAA
63 AACAGGGTTAGAGTATCCCCGATTATAAAAAATCGATATTTTAGAAATAAAA
187520 ACATGAATGA
Statistics
Matches: 356, Mismatches: 64, Indels: 26
0.80 0.14 0.06
Matches are distributed among these distances:
157 4 0.01
158 218 0.61
159 133 0.37
160 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.21, T:0.28
Consensus pattern (156 bp):
TCCCCGATTGTGAAAAATCAGTGTTTTGAAAATAAAACCAGGTTGGAGTATCCCCTAAAAATAAC
AGGGTTAGAGTATCCCCGATTATAAAAAATCGATATTTTAGAAATAAAACCGGGGTTAGAGCATC
CCTTCAAAAATAATGGGGTTAGAGTA
Found at i:187363 original size:238 final size:237
Alignment explanation
Indices: 186929--187519 Score: 675
Period size: 238 Copynumber: 2.5 Consensus size: 237
186919 TCGAGTACAT
* * * * * *
186929 TCCCTGATGGTGAAAAATCAATATTTTGGAAATAAAATCAGAGTTTGAGTATCTCCTCGAAAATA
1 TCCCTGATGGTGAAAAATCGATGTTTTGGAAATAAAATCAGGGTTGGAGTATCCCCTCAAAAATA
*
186994 ACGGGGTTAGAGTATCCCCGATTATGAAAAATCGATATTTTAGAAATAAAGCCGAGGTTAGAGCA
66 ACGGGGTTAGAGTATCCCCGATTATGAAAAATCGATATTTTAGAAATAAAACCGAGGTTAGAGCA
* * * * * *
187059 TCTCTTCAAAAATAACGGGGCTATAGTATCCCCAATTGTGAAAAATCAGTGTTTTGGAAATAAAA
131 TCCCCTCAAAAATAACGGGACTAGAGTATCCCCAATTATGAAAAATCAGTGTTTTGAAAATAAAA
** *
187124 CCGAGGTTGGAGTAT-CTCCCAAAAAATAAT-AGGGTTGGAGTA
196 CCGAGGTTAAAGTATCCTCCC-AAAAATAATGA-GGTTAGAGTA
* * * * * *
187166 TCCCTGATTGTAAAAAATCGGTGTTTTGGAAATAAAACCGGGGTTGGAGGATCCCCTCAAAAATA
1 TCCCTGATGGTGAAAAATCGATGTTTTGGAAATAAAATCAGGGTTGGAGTATCCCCTCAAAAATA
* * * * * * * *
187231 ATGGGGTTGGAGTATCCCTGATTGTGAAAAAATTGGTGTTTT-GAAAATAAAACCGGGGTTAGAG
66 ACGGGGTTAGAGTATCCCCGATTATG-AAAAATCGATATTTTAG-AAATAAAACCGAGGTTAGAG
* * * * * *
187295 TATCCCCTCAAAAATAATGGGATTAGAGTATTCCCGATTATGAAAAATCTGTGTTTTGAAAATAA
129 CATCCCCTCAAAAATAACGGGACTAGAGTATCCCCAATTATGAAAAATCAGTGTTTTGAAAATAA
* **
187360 AACCGGGGTTAAAGTATCCTTTCAAAAATAATGAGGTTAGAGTA
194 AACCGAGGTTAAAGTATCCTCCCAAAAATAATGAGGTTAGAGTA
* * * * * * * *
187404 TCCCCGATGGCGAAAAATTGATGTTTTGAAAATATAATCAGGATTGGAGTATCCCCTTAGAAATA
1 TCCCTGATGGTGAAAAATCGATGTTTTGGAAATAAAATCAGGGTTGGAGTATCCCCTCAAAAATA
* * *
187469 ACAGGGTTAGAGTATCCCCGATGATAAAAAATCGATATTTTAGAAATAAAA
66 ACGGGGTTAGAGTATCCCCGATTATGAAAAATCGATATTTTAGAAATAAAA
187520 ACATGAATGA
Statistics
Matches: 286, Mismatches: 63, Indels: 10
0.80 0.18 0.03
Matches are distributed among these distances:
237 96 0.34
238 186 0.65
239 4 0.01
ACGTcount: A:0.37, C:0.14, G:0.21, T:0.28
Consensus pattern (237 bp):
TCCCTGATGGTGAAAAATCGATGTTTTGGAAATAAAATCAGGGTTGGAGTATCCCCTCAAAAATA
ACGGGGTTAGAGTATCCCCGATTATGAAAAATCGATATTTTAGAAATAAAACCGAGGTTAGAGCA
TCCCCTCAAAAATAACGGGACTAGAGTATCCCCAATTATGAAAAATCAGTGTTTTGAAAATAAAA
CCGAGGTTAAAGTATCCTCCCAAAAATAATGAGGTTAGAGTA
Found at i:192120 original size:52 final size:52
Alignment explanation
Indices: 192042--192170 Score: 213
Period size: 52 Copynumber: 2.5 Consensus size: 52
192032 CGAAATATGA
* *
192042 AAATTTATCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGC
1 AAATTTACCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGC
*
192094 AAATTTACCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
1 AAATTTACCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGC
* *
192146 AAATTTGCCTGCATTTATCGATACA
1 AAATTTACCTGCATGTATCGATACA
192171 AAGATCGGTG
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 72 1.00
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.36
Consensus pattern (52 bp):
AAATTTACCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGC
Found at i:192183 original size:52 final size:52
Alignment explanation
Indices: 192042--192190 Score: 185
Period size: 52 Copynumber: 2.9 Consensus size: 52
192032 CGAAATATGA
* *
192042 AAATTTATCTGCATGTATCGATACATTTA-ATAGTGTATCGATACATCTGGGC
1 AAATTTACCTGCATGTATCGATACA-TAAGATAGTGTATCGATACATCTGGGC
*** *
192094 AAATTTACCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
1 AAATTTACCTGCATGTATCGATACATAAGATAGTGTATCGATACATCTGGGC
* * *
192146 AAATTTGCCTGCATTTATCGATACA-AAGATCGGTGTATCGATACA
1 AAATTTACCTGCATGTATCGATACATAAGAT-AGTGTATCGATACA
192191 ATGTATCGAT
Statistics
Matches: 85, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
51 4 0.05
52 81 0.95
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.35
Consensus pattern (52 bp):
AAATTTACCTGCATGTATCGATACATAAGATAGTGTATCGATACATCTGGGC
Found at i:192197 original size:13 final size:13
Alignment explanation
Indices: 192179--192203 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
192169 CAAAGATCGG
192179 TGTATCGATACAA
1 TGTATCGATACAA
192192 TGTATCGATACA
1 TGTATCGATACA
192204 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:192996 original size:20 final size:20
Alignment explanation
Indices: 192971--193024 Score: 83
Period size: 20 Copynumber: 2.7 Consensus size: 20
192961 AAAAAATACC
*
192971 TAAATGTATCGATATATTGA
1 TAAATGTATCGATATAATGA
192991 TAAATGTATCGATATAATGA
1 TAAATGTATCGATATAATGA
193011 -AGAATGTATCGATA
1 TA-AATGTATCGATA
193025 CAAATTGTGA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 1 0.03
20 31 0.97
ACGTcount: A:0.43, C:0.06, G:0.17, T:0.35
Consensus pattern (20 bp):
TAAATGTATCGATATAATGA
Found at i:193746 original size:43 final size:44
Alignment explanation
Indices: 193709--193874 Score: 190
Period size: 44 Copynumber: 3.8 Consensus size: 44
193699 AAGTGTGTTC
* *
193709 TGCTCTTTGAGGATAAA-GGAAAAGAAGGAAATAAAGTGTGTCT
1 TGCTCTTTGAGGACAAAGGGAAAAGAAGGAAATAAAGTGCGTCT
* * * * * *
193752 TGCTCTTTAAAGACAAAAGGAAAAGAAGTAAATAAGGTACGTCT
1 TGCTCTTTGAGGACAAAGGGAAAAGAAGGAAATAAAGTGCGTCT
* * * * *
193796 TGCTTTTTGAGGACAAATGGAAAAGAAGGAAATAAGGTGCATCC
1 TGCTCTTTGAGGACAAAGGGAAAAGAAGGAAATAAAGTGCGTCT
* *
193840 TGTTCTTTGAGAACAAAGGGAAAAGAAGGAAATAA
1 TGCTCTTTGAGGACAAAGGGAAAAGAAGGAAATAA
193875 GTCATGCTCT
Statistics
Matches: 103, Mismatches: 19, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
43 14 0.14
44 89 0.86
ACGTcount: A:0.43, C:0.09, G:0.25, T:0.23
Consensus pattern (44 bp):
TGCTCTTTGAGGACAAAGGGAAAAGAAGGAAATAAAGTGCGTCT
Found at i:193824 original size:88 final size:87
Alignment explanation
Indices: 193709--193875 Score: 219
Period size: 88 Copynumber: 1.9 Consensus size: 87
193699 AAGTGTGTTC
* ** *
193709 TGCTCTTTGAGGATAAAGGAAAAGAAGGAAATAAAGTGTGTCTTGCTCTTTAA-AGACAAAAGGA
1 TGCTCTTTGAGGACAAAGGAAAAGAAGGAAATAAAGTGCATCCTGCTCTTTAAGA-ACAAAAGGA
*
193773 AAAGAAGTAAATAAGGTACGTCT
65 AAAGAAGGAAATAAGGTACGTCT
* * * * *
193796 TGCTTTTTGAGGACAAATGGAAAAGAAGGAAATAAGGTGCATCCTGTTCTTTGAGAACAAAGGGA
1 TGCTCTTTGAGGACAAA-GGAAAAGAAGGAAATAAAGTGCATCCTGCTCTTTAAGAACAAAAGGA
193861 AAAGAAGGAAATAAG
65 AAAGAAGGAAATAAG
193876 TCATGCTCTT
Statistics
Matches: 68, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
87 15 0.22
88 52 0.76
89 1 0.01
ACGTcount: A:0.43, C:0.09, G:0.26, T:0.23
Consensus pattern (87 bp):
TGCTCTTTGAGGACAAAGGAAAAGAAGGAAATAAAGTGCATCCTGCTCTTTAAGAACAAAAGGAA
AAGAAGGAAATAAGGTACGTCT
Found at i:194134 original size:62 final size:62
Alignment explanation
Indices: 193881--194643 Score: 868
Period size: 62 Copynumber: 12.3 Consensus size: 62
193871 ATAAGTCATG
** *
193881 CTCTTTGAGGACTAAAAGGTGCCACCAACTTATGTGGGCTTT-AAAAGGAAAAAGGAAACCATCT
1 CTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAA-GAAAAAGG----CATCC
*
193945 TG
61 TA
*
193947 CTTTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTT-AAAAG-AAAAGGCATCCTA
1 CTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCATCCTA
* * * * * *
194007 CTCTCTGAGGACTAGAAGATGCCACCAACTCGTATGGG-TTTTAAAAGAAAAAGG-AGTCCTT
1 CTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCA-TCCTA
* * * *** * *
194068 CTCTTTGAGAACTAAAAGATGCTACCAACTCGTGTACACTTTGAAAAGAAAAAGGCATTCTG
1 CTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCATCCTA
* * * * * * *
194130 CTCTTTAAGGACTAAAATGTGCAACCAACTTGTATGGGCTTT-ATAAGGAAAAAGGAAAGCATCT
1 CTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGA-AAAGAAAAA-G---GCATCC
194194 TA
61 TA
* * * * *
194196 CTTTTTGAGGACTAAAAGGTGCCACCAACTCGTGTAGGCTTT--AAAG-AAAAGACGTCTTA
1 CTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCATCCTA
* * * *
194255 CTCTTTGAGGACTAGAAGGTG-CACCAACTCTTGTAGGCTTT-AAAAGAAAAGAAAGGCATCCTG
1 CTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAG--AA-AAAGGCATCCTA
* *
194318 CTCTTTGAGGACTAAAAAGTGCCACTAACTCGTGTGGGCTTTGAAAAGAAAAAGGCATCCTA
1 CTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCATCCTA
* * *
194380 CTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGACTTTGAAAAGAAAAAGGCGTCCTG
1 CTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCATCCTA
* * *
194442 CTCTTTGAGGACTAAAGGGTGCCACCAACTCATGTGGG-TTTGAAAAGAAAAAGGCGTCCTA
1 CTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCATCCTA
* * *
194503 CTTTTTAAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAG-AAAAGGTATCCTA
1 CTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCATCCTA
* *
194564 CTCTTTGAGGACTAAAAGGTACCACCAACTCGTGTGGGCTTTGAAAAGAAAAAAGGCATCTTA
1 CTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAG-AAAAAGGCATCCTA
194627 CTCTTTGAGGACTAAAA
1 CTCTTTGAGGACTAAAA
194644 AGGGCTAAAA
Statistics
Matches: 598, Mismatches: 79, Indels: 43
0.83 0.11 0.06
Matches are distributed among these distances:
58 19 0.03
59 32 0.05
60 44 0.07
61 153 0.26
62 172 0.29
63 63 0.11
64 26 0.04
65 6 0.01
66 83 0.14
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.25
Consensus pattern (62 bp):
CTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCATCCTA
Found at i:194165 original size:123 final size:124
Alignment explanation
Indices: 193881--194643 Score: 850
Period size: 123 Copynumber: 6.1 Consensus size: 124
193871 ATAAGTCATG
** * **
193881 CTCTTTGAGGACTAAAAGGTGCCACCAACTTATGTGGGCTTTAAAAGGAAAAAGGAAACCATCTT
1 CTCTTTGAGGACTAAAAGGTGCCACCAACTCGTATGGGCTTTAAAA-GAAAAAGGAAGTC--CTT
*
193946 GCTTTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTT-AAAAG-AAAAGGCATCCTA
63 -CTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCATCCTA
* * * *
194007 CTCTCTGAGGACTAGAAGATGCCACCAACTCGTATGGGTTTTAAAAGAAAAAGG-AGTCCTTCTC
1 CTCTTTGAGGACTAAAAGGTGCCACCAACTCGTATGGGCTTTAAAAGAAAAAGGAAGTCCTTCTC
* * * *** * *
194071 TTTGAGAACTAAAAGATGCTACCAACTCGTGTACACTTTGAAAAGAAAAAGGCATTCTG
66 TTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCATCCTA
* * * * *
194130 CTCTTTAAGGACTAAAATGTGCAACCAACTTGTATGGGCTTTATAAGGAAAAAGGAAAG-CATCT
1 CTCTTTGAGGACTAAAAGGTGCCACCAACTCGTATGGGCTTTA-AAAGAAAAAGG-AAGTC--CT
* * * * *
194194 TACTTTTTGAGGACTAAAAGGTGCCACCAACTCGTGTAGGCTTT--AAAG-AAAAGACGTCTTA
62 T-CTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCATCCTA
* * * * * *
194255 CTCTTTGAGGACTAGAAGGTG-CACCAACTCTTGTAGGCTTTAAAAG-AAAAGAAAGGCATCCTG
1 CTCTTTGAGGACTAAAAGGTGCCACCAACTCGTATGGGCTTTAAAAGAAAAAGGAA-G--TCCTT
* *
194318 CTCTTTGAGGACTAAAAAGTGCCACTAACTCGTGTGGGCTTTGAAAAGAAAAAGGCATCCTA
63 CTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCATCCTA
* * * *
194380 CTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGACTTTGAAAAGAAAAAGG-CGTCCTGCT
1 CTCTTTGAGGACTAAAAGGTGCCACCAACTCGTATGGGCTTT-AAAAGAAAAAGGAAGTCCTTCT
* * *
194444 CTTTGAGGACTAAAGGGTGCCACCAACTCATGTGGG-TTTGAAAAGAAAAAGGCGTCCTA
65 CTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCATCCTA
* * * * *
194503 CTTTTTAAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAG-AAAAGGTA-TCCTACT
1 CTCTTTGAGGACTAAAAGGTGCCACCAACTCGTATGGGCTTT-AAAAGAAAAAGGAAGTCCTTCT
* *
194566 CTTTGAGGACTAAAAGGTACCACCAACTCGTGTGGGCTTTGAAAAGAAAAAAGGCATCTTA
65 CTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAG-AAAAAGGCATCCTA
194627 CTCTTTGAGGACTAAAA
1 CTCTTTGAGGACTAAAA
194644 AGGGCTAAAA
Statistics
Matches: 537, Mismatches: 79, Indels: 44
0.81 0.12 0.07
Matches are distributed among these distances:
121 37 0.07
122 97 0.18
123 127 0.24
124 98 0.18
125 66 0.12
126 63 0.12
127 8 0.01
128 41 0.08
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.25
Consensus pattern (124 bp):
CTCTTTGAGGACTAAAAGGTGCCACCAACTCGTATGGGCTTTAAAAGAAAAAGGAAGTCCTTCTC
TTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCATCCTA
Found at i:200975 original size:79 final size:78
Alignment explanation
Indices: 200817--201105 Score: 325
Period size: 79 Copynumber: 3.7 Consensus size: 78
200807 TGGAGTACAT
* * * * *
200817 TCCCCGATGGTGGAACATCGATGTTTTGAAAATAAACTGGGATTGAAGTATCCTCTCGAAAATAA
1 TCCCCGATTGTGAAAAATCGATGTTTTGAAAATAAACCGGGATTGAAGTATCCTTTCGAAAATAA
*
200882 CGGGGTTAGAGTA
66 CAGGGTTAGAGTA
* * * *
200895 TCCCCGATTGTGGAAAATTGATGTTTT-AGAAATAAAGCC-GGAGTTGGAGCATCCTTTCGAAAA
1 TCCCCGATTGTGAAAAATCGATGTTTTGA-AAATAAA-CCGGGA-TTGAAGTATCCTTTCGAAAA
200958 TAACAGGGTTAGAGTA
63 TAACAGGGTTAGAGTA
** * *
200974 TCCCTAATTGTGAAAAATCGATGTTTTGAAAATAAAACCGGGATTAAAGTATCCCCTT-GAAAAT
1 TCCCCGATTGTGAAAAATCGATGTTTTGAAAAT-AAACCGGGATTGAAGTAT-CCTTTCGAAAAT
*
201038 AACAGGGTTGGAGTA
64 AACAGGGTTAGAGTA
* * * *
201053 TCCCCGATTGTGAAAAATC-AGTGTTTTGAAAAAAAACTGGGGTTGGAGTATCC
1 TCCCCGATTGTGAAAAATCGA-TGTTTTGAAAATAAACCGGGATTGAAGTATCC
201106 CCGATTGTGG
Statistics
Matches: 179, Mismatches: 24, Indels: 17
0.81 0.11 0.08
Matches are distributed among these distances:
77 3 0.02
78 49 0.27
79 116 0.65
80 11 0.06
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.28
Consensus pattern (78 bp):
TCCCCGATTGTGAAAAATCGATGTTTTGAAAATAAACCGGGATTGAAGTATCCTTTCGAAAATAA
CAGGGTTAGAGTA
Found at i:201103 original size:50 final size:51
Alignment explanation
Indices: 201042--201255 Score: 252
Period size: 51 Copynumber: 4.2 Consensus size: 51
201032 GAAAATAACA
* *
201042 GGGTTGGAGTATCCCCGATTGTGAAAAATCAGTGTTTT-GAAAAAAAACTG
1 GGGTTGGAGTATCCCCGATTGTGAAAAATCGGTGTTTTAGAAATAAAACTG
* * *
201092 GGGTTGGAGTATCCCCGATTGTGGAAAATTGGTGTTTTAGAAATAAAACCG
1 GGGTTGGAGTATCCCCGATTGTGAAAAATCGGTGTTTTAGAAATAAAACTG
* * *** * *
201143 GGGCTAGAGTATCTTTGATTGTGAAAAATTGATGTTTTAGAAATAAAACTG
1 GGGTTGGAGTATCCCCGATTGTGAAAAATCGGTGTTTTAGAAATAAAACTG
* * * * * *
201194 GAGTTAGAGTATCCCCGATTATGGAAAATCGGTGTTCTGGAAATAAAAC-G
1 GGGTTGGAGTATCCCCGATTGTGAAAAATCGGTGTTTTAGAAATAAAACTG
201244 GGGTTGGAGTAT
1 GGGTTGGAGTAT
201256 ACTCTCGAAA
Statistics
Matches: 137, Mismatches: 26, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
50 46 0.34
51 91 0.66
ACGTcount: A:0.32, C:0.10, G:0.28, T:0.30
Consensus pattern (51 bp):
GGGTTGGAGTATCCCCGATTGTGAAAAATCGGTGTTTTAGAAATAAAACTG
Found at i:201346 original size:78 final size:77
Alignment explanation
Indices: 201207--201379 Score: 195
Period size: 78 Copynumber: 2.2 Consensus size: 77
201197 TTAGAGTATC
* ** * *
201207 CCCGATTATGGAAAATCGGTGTTCTGGAAATAAAACGGGGTTGGAGTATACTCTCGAAAATAACA
1 CCCGATGATGGAAAATCAATGTTCTAGAAATAAAACGGGGTTGGAGTATACTCTAGAAAATAACA
201272 GGGTTGGAGTAA
66 GGGTTGGAGTAA
* * * *
201284 CCCGATGATGGAAAATCAATGTTTTAGAAATAAAGTCGGGGTTGGAGTATGCCTTTAG-AAATAA
1 CCCGATGATGGAAAATCAATGTTCTAGAAATAAA-ACGGGGTTGGAGTAT-ACTCTAGAAAATAA
* * *
201348 CGGGGTTGGATTAT
64 CAGGGTTGGAGTAA
*
201362 CCTCGATGGTGGAAAATC
1 CC-CGATGATGGAAAATC
201380 GGTATTTTAA
Statistics
Matches: 80, Mismatches: 13, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
77 29 0.36
78 33 0.41
79 18 0.22
ACGTcount: A:0.32, C:0.13, G:0.28, T:0.27
Consensus pattern (77 bp):
CCCGATGATGGAAAATCAATGTTCTAGAAATAAAACGGGGTTGGAGTATACTCTAGAAAATAACA
GGGTTGGAGTAA
Found at i:205580 original size:20 final size:22
Alignment explanation
Indices: 205535--205582 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
205525 AACAAATCAT
* *
205535 AGAAGAAACAAAGAAGAGAAAG
1 AGAAAAAACAAACAAGAGAAAG
205557 AGAAAAAACAAACAAGA-AAA-
1 AGAAAAAACAAACAAGAGAAAG
205577 AGAAAA
1 AGAAAA
205583 GAAGAAATGC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 6 0.25
21 3 0.12
22 15 0.62
ACGTcount: A:0.75, C:0.06, G:0.19, T:0.00
Consensus pattern (22 bp):
AGAAAAAACAAACAAGAGAAAG
Found at i:209348 original size:166 final size:167
Alignment explanation
Indices: 208827--209581 Score: 768
Period size: 167 Copynumber: 4.5 Consensus size: 167
208817 ATTGATCCAA
* * * * * *
208827 AATTTTAAAAATTTATCAAATATTATTATTTAATTTATATTAAATCAGTTT-TCAAAAATTCATT
1 AATTTTTAAAATTCATCAAATATCATTATTTAATTCATATTAAATCA-TTTCTGAAAAATTAATT
* * * * * ** *
208891 TATTTTCATAATTTTTTTAATTTTTTCC-TTAAATTTTTCATTTTC-TA-AAATA-CGAAATTTT
65 CATTTTCATGA-GTTTTGAATTTTTTCCTTTAAAATTCCCATTTCCTTAGAAA-ACCG-AATTTT
** *
208952 CTACTCTATAAAT-TTTTTCGAGG-GGATTT-TCTCAGTTT-T
127 CTACTCCGTAAATGTTTTT-G-GGAGGATTTATCTTAGTTTAT
* * * *
208991 CAATTTTTAAAATTCATCAAATATTATTATTTGATTCATATTAAATCA-ATCTTAAAAAATTAAT
1 -AATTTTTAAAATTCATCAAATATCATTATTTAATTCATATTAAATCATTTC-TGAAAAATTAAT
* * * * * * *
209055 TCATGTTCATCAGTTTTGAATTTTTT-CTTTGAAATTCCCTTTTCCTTGAAAAAACCGAGTTTCC
64 TCATTTTCATGAGTTTTGAATTTTTTCCTTTAAAATTCCCATTTCCTT-AGAAAACCGAATTTTC
* * *
209119 TACTCCGTAAATATTTTCGAGAGGATTTATCTTAGTTTAT
128 TACTCCGTAAATGTTTTTGGGAGGATTTATCTTAGTTTAT
* * *
209159 AATTTTTAAAATTCATCAAATATCATCATTTAATTCATAGTAAATCATTTCTGAAAAATTAATTT
1 AATTTTTAAAATTCATCAAATATCATTATTTAATTCATATTAAATCATTTCTGAAAAATTAATTC
209224 ATTTTCATGAGTTTTGAA-TTTTTCCTTTAAAATTCCCATTTCCTTAGAAAACCGAATTTTCTAC
66 ATTTTCATGAGTTTTGAATTTTTTCCTTTAAAATTCCCATTTCCTTAGAAAACCGAATTTTCTAC
* *
209288 TCCGTAGATGTTTTTGGGATGATTTATCTTAGTTTAT
131 TCCGTAAATGTTTTTGGGAGGATTTATCTTAGTTTAT
* * *
209325 AATTTTTAAAATTTATCAAATATCATAATTTAATTCATATTAAATCAGTTCTGAAAAATTAATTC
1 AATTTTTAAAATTCATCAAATATCATTATTTAATTCATATTAAATCATTTCTGAAAAATTAATTC
* * * * *
209390 ATTTTCATGAGTTTTGAATTTTTTTCTTTAAAATTCCCCTTTCTTTGGAAAATCGAATTTTCTAC
66 ATTTTCATGAGTTTTGAATTTTTTCCTTTAAAATTCCCATTTCCTTAGAAAACCGAATTTTCTAC
* * * *
209455 TCCGTAGATGGTTTTGGGATGATTTTTCTTAGTTTAT
131 TCCGTAAATGTTTTTGGGAGGATTTATCTTAGTTTAT
** * * * *
209492 AATTTTTAAAATTCAT-ATAATATTGTTATTAAACTCTTATTAAATTAGTTTC--AATAAATTCA
1 AATTTTTAAAATTCATCA-AATATCATTATTTAATTCATATTAAATCA-TTTCTGAA-AAATT-A
* *
209554 ATTTA-TTTCATGAATTTTGAAATTTTTT
62 ATTCATTTTCATGAGTTTTG-AATTTTTT
209582 GTATACATTA
Statistics
Matches: 504, Mismatches: 67, Indels: 35
0.83 0.11 0.06
Matches are distributed among these distances:
163 2 0.00
164 23 0.05
165 64 0.13
166 158 0.31
167 238 0.47
168 19 0.04
ACGTcount: A:0.33, C:0.12, G:0.08, T:0.48
Consensus pattern (167 bp):
AATTTTTAAAATTCATCAAATATCATTATTTAATTCATATTAAATCATTTCTGAAAAATTAATTC
ATTTTCATGAGTTTTGAATTTTTTCCTTTAAAATTCCCATTTCCTTAGAAAACCGAATTTTCTAC
TCCGTAAATGTTTTTGGGAGGATTTATCTTAGTTTAT
Found at i:209411 original size:333 final size:332
Alignment explanation
Indices: 208827--209507 Score: 817
Period size: 333 Copynumber: 2.0 Consensus size: 332
208817 ATTGATCCAA
* * * * * * *
208827 AATTTTAAAAATTTATCAAATATTATTATTTAATTTATATTAAATCAGTTTTCAAAAATTCATTT
1 AATTTTTAAAATTCATCAAATATCATCATTTAATTCATAGTAAATCAGTTTTCAAAAATTAATTT
* * * ** *
208892 ATTTTCATAATTTTTTTAATTTTTTCCTTAAATTTTTCATTTTCTAAAATACGAAATTTTCTACT
66 ATTTTCATAATGTTTTGAATTTTTTCCTTAAAATTCCCATTTCCTAAAATACGAAATTTTCTACT
* * *
208957 CTATAAATTTTTTCGAGGGGATTTTCTCAGTTTTCAATTTTTAAAATTCATCAAATATTATTATT
131 CCATAAATTTTTTCGAGGGGATTTTCTCAGTTTTCAATTTTTAAAATTCATCAAATATCATAATT
* *
209022 TGATTCATATTAAATCAATCTTAAAAAATTAATTCATGTTCATCAGTTTTGAA-TTTTTTCTTTG
196 TAATTCATATTAAATCAATCTTAAAAAATTAATTCATGTTCATCAGTTTTGAATTTTTTTCTTTA
* *
209086 AAATTCCCTTTTCCTTGAAAAAACCGAGTTTCCTACTCCGTAAAT-ATTTTCGAGAGGATTTATC
261 AAATTCCCCTTTCCTTG-AAAAACCGAATTTCCTACTCCGTAAATGATTTT-GAGAGGATTTATC
209150 TTAGTTTAT
324 TTAGTTTAT
*
209159 AATTTTTAAAATTCATCAAATATCATCATTTAATTCATAGTAAATCA-TTTCTGAAAAATTAATT
1 AATTTTTAAAATTCATCAAATATCATCATTTAATTCATAGTAAATCAGTTT-TCAAAAATTAATT
*
209223 TATTTTCATGA-GTTTTGAA-TTTTTCCTTTAAAATTCCCATTTCCTTAGAAA-ACCG-AATTTT
65 TATTTTCATAATGTTTTGAATTTTTTCC-TTAAAATTCCCATTTCC-TA-AAATA-CGAAATTTT
* * * * *
209284 CTACTCCGTAGATGTTTTT-G-GGATGATTTATCTTAGTTTAT-AATTTTTAAAATTTATCAAAT
126 CTACTCCATAAAT-TTTTTCGAGG-GGATTT-TCTCAGTTT-TCAATTTTTAAAATTCATCAAAT
* * * *
209346 ATCATAATTTAATTCATATTAAATCAGT-TCTGAAAAATTAATTCATTTTCATGAGTTTTGAATT
187 ATCATAATTTAATTCATATTAAATCAATCT-TAAAAAATTAATTCATGTTCATCAGTTTTGAATT
* * * * * * * *
209410 TTTTTCTTTAAAATTCCCCTTTCTTTGGAAAATCGAATTTTCTACTCCGTAGATGGTTTTGGGAT
251 TTTTTCTTTAAAATTCCCCTTTCCTTGAAAAACCGAATTTCCTACTCCGTAAATGATTTTGAGAG
*
209475 GATTTTTCTTAGTTTAT
316 GATTTATCTTAGTTTAT
209492 AATTTTTAAAATTCAT
1 AATTTTTAAAATTCAT
209508 ATAATATTGT
Statistics
Matches: 297, Mismatches: 40, Indels: 23
0.82 0.11 0.06
Matches are distributed among these distances:
330 7 0.02
331 24 0.08
332 88 0.30
333 148 0.50
334 30 0.10
ACGTcount: A:0.32, C:0.12, G:0.08, T:0.48
Consensus pattern (332 bp):
AATTTTTAAAATTCATCAAATATCATCATTTAATTCATAGTAAATCAGTTTTCAAAAATTAATTT
ATTTTCATAATGTTTTGAATTTTTTCCTTAAAATTCCCATTTCCTAAAATACGAAATTTTCTACT
CCATAAATTTTTTCGAGGGGATTTTCTCAGTTTTCAATTTTTAAAATTCATCAAATATCATAATT
TAATTCATATTAAATCAATCTTAAAAAATTAATTCATGTTCATCAGTTTTGAATTTTTTTCTTTA
AAATTCCCCTTTCCTTGAAAAACCGAATTTCCTACTCCGTAAATGATTTTGAGAGGATTTATCTT
AGTTTAT
Found at i:209895 original size:9 final size:9
Alignment explanation
Indices: 209882--209921 Score: 53
Period size: 9 Copynumber: 4.4 Consensus size: 9
209872 GAACTCAGCA
*
209882 AAAAAAAAA
1 AAAAAAAAG
209891 AAAAAAAAG
1 AAAAAAAAG
*
209900 AGAAAAAAG
1 AAAAAAAAG
*
209909 AAAGAAAAG
1 AAAAAAAAG
209918 AAAA
1 AAAA
209922 GAAGAAACAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:209905 original size:13 final size:12
Alignment explanation
Indices: 209881--209938 Score: 55
Period size: 13 Copynumber: 4.6 Consensus size: 12
209871 GGAACTCAGC
209881 AAAAAAA-AAAA
1 AAAAAAAGAAAA
209892 AAAAAAAGAGAAA
1 AAAAAAAGA-AAA
*
209905 AAAGAAAGAAAA
1 AAAAAAAGAAAA
*
209917 GAAAAGAAGAAACA
1 -AAAAAAAGAAA-A
209931 AGAAAAAA
1 A-AAAAAA
209939 ATAGGAAAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
11 7 0.18
12 4 0.11
13 21 0.55
14 6 0.16
ACGTcount: A:0.84, C:0.02, G:0.14, T:0.00
Consensus pattern (12 bp):
AAAAAAAGAAAA
Found at i:209907 original size:17 final size:17
Alignment explanation
Indices: 209885--209939 Score: 51
Period size: 16 Copynumber: 3.4 Consensus size: 17
209875 CTCAGCAAAA
209885 AAAAAAAAAAAAAAGAG
1 AAAAAAAAAAAAAAGAG
* *
209902 AAAAAAGAAAGAAA-AG
1 AAAAAAAAAAAAAAGAG
* * *
209918 AAAAGAAGAAACAAGA-
1 AAAAAAAAAAAAAAGAG
209934 AAAAAA
1 AAAAAA
209940 TAGGAAAAAT
Statistics
Matches: 29, Mismatches: 8, Indels: 3
0.73 0.20 0.08
Matches are distributed among these distances:
16 16 0.55
17 13 0.45
ACGTcount: A:0.84, C:0.02, G:0.15, T:0.00
Consensus pattern (17 bp):
AAAAAAAAAAAAAAGAG
Found at i:216082 original size:20 final size:20
Alignment explanation
Indices: 216038--216085 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
216028 AAAAAGATAG
*
216038 AATGTATCGATACATTCATA
1 AATGTATCGATACATTCAAA
* *
216058 CATGTATCGATACATTGAAA
1 AATGTATCGATACATTCAAA
216078 AATGTATC
1 AATGTATC
216086 CACAAAGGGT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (20 bp):
AATGTATCGATACATTCAAA
Found at i:219595 original size:19 final size:20
Alignment explanation
Indices: 219571--219614 Score: 81
Period size: 19 Copynumber: 2.2 Consensus size: 20
219561 AATTTTGCAA
219571 ACAAAAACATTGGCAAGC-G
1 ACAAAAACATTGGCAAGCAG
219590 ACAAAAACATTGGCAAGCAG
1 ACAAAAACATTGGCAAGCAG
219610 ACAAA
1 ACAAA
219615 TATGTTGCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 18 0.75
20 6 0.25
ACGTcount: A:0.52, C:0.20, G:0.18, T:0.09
Consensus pattern (20 bp):
ACAAAAACATTGGCAAGCAG
Found at i:219863 original size:21 final size:21
Alignment explanation
Indices: 219839--219887 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
219829 AAATCTCCTA
219839 AATCACCTTTTAATAAACCCT
1 AATCACCTTTTAATAAACCCT
* *
219860 AATCACCTTTTAATATACCTT
1 AATCACCTTTTAATAAACCCT
219881 AATCACC
1 AATCACC
219888 CGTCTCTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.37, C:0.29, G:0.00, T:0.35
Consensus pattern (21 bp):
AATCACCTTTTAATAAACCCT
Found at i:220228 original size:11 final size:11
Alignment explanation
Indices: 220214--220257 Score: 65
Period size: 10 Copynumber: 4.2 Consensus size: 11
220204 TAATATATTT
220214 TTATATTCATA
1 TTATATTCATA
220225 TTATATTCATA
1 TTATATTCATA
*
220236 TTAT-TTTATA
1 TTATATTCATA
220246 TTATA-TCATA
1 TTATATTCATA
220256 TT
1 TT
220258 TAATTATTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
10 15 0.50
11 15 0.50
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (11 bp):
TTATATTCATA
Found at i:220244 original size:5 final size:5
Alignment explanation
Indices: 220214--220257 Score: 52
Period size: 5 Copynumber: 8.4 Consensus size: 5
220204 TAATATATTT
* *
220214 TTATA TTCATA TTATA TTCATA TTATT TTATA TTATA TCATA TT
1 TTATA TT-ATA TTATA TT-ATA TTATA TTATA TTATA TTATA TT
220258 TAATTATTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
5 23 0.70
6 10 0.30
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (5 bp):
TTATA
Found at i:220269 original size:27 final size:26
Alignment explanation
Indices: 220202--220278 Score: 84
Period size: 27 Copynumber: 2.8 Consensus size: 26
220192 TTATATAAAT
*
220202 TTTAATATATTTTTATATTCATATTATA
1 TTTAATAT-TTTTTATATT-ATATCATA
*
220230 -TTCATATTATTTTATATTATATCATA
1 TTTAATATT-TTTTATATTATATCATA
*
220256 TTTAATTATTTTTTATATAATAT
1 TTTAA-TATTTTTTATATTATAT
220279 TCAAGTTGTA
Statistics
Matches: 42, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
26 8 0.19
27 30 0.71
28 4 0.10
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (26 bp):
TTTAATATTTTTTATATTATATCATA
Found at i:220367 original size:21 final size:22
Alignment explanation
Indices: 220338--220382 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
220328 ATTTAATTTT
220338 AATTCAAATTCA-TTAACTTAAA
1 AATTCAAA-TCATTTAACTTAAA
*
220360 AATT-AAATCATTTAATTTAAA
1 AATTCAAATCATTTAACTTAAA
220381 AA
1 AA
220383 CTATAAATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 3 0.14
21 14 0.67
22 4 0.19
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38
Consensus pattern (22 bp):
AATTCAAATCATTTAACTTAAA
Found at i:223060 original size:2 final size:2
Alignment explanation
Indices: 223053--223079 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
223043 GTCATGTAAG
223053 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
223080 AAAGAGGCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:224193 original size:15 final size:15
Alignment explanation
Indices: 224116--224196 Score: 64
Period size: 15 Copynumber: 5.7 Consensus size: 15
224106 TTAGTCAAAT
*
224116 TTAAATATATAATATT
1 TTAAATATATAAT-TA
224132 TTAAATA-A-AATTA
1 TTAAATATATAATTA
** * *
224145 TTTTATATAAAAATA
1 TTAAATATATAATTA
*
224160 TTTAA-ATATAA-TA
1 TTAAATATATAATTA
224173 -TAAATATATAATTA
1 TTAAATATATAATTA
224187 TTAAATATAT
1 TTAAATATAT
224197 TAAAAATATG
Statistics
Matches: 53, Mismatches: 7, Indels: 11
0.75 0.10 0.15
Matches are distributed among these distances:
12 3 0.06
13 14 0.26
14 11 0.21
15 18 0.34
16 7 0.13
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (15 bp):
TTAAATATATAATTA
Found at i:224205 original size:24 final size:26
Alignment explanation
Indices: 224161--224211 Score: 70
Period size: 24 Copynumber: 2.0 Consensus size: 26
224151 ATAAAAATAT
*
224161 TTAAATATAATATAAATATATAATTA
1 TTAAATATAATATAAAAATATAATTA
*
224187 TTAAATAT-AT-TAAAAATATGATTA
1 TTAAATATAATATAAAAATATAATTA
224211 T
1 T
224212 ACTCAAATCT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 13 0.57
25 2 0.09
26 8 0.35
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (26 bp):
TTAAATATAATATAAAAATATAATTA
Found at i:225094 original size:3 final size:3
Alignment explanation
Indices: 225088--225119 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
225078 AACACTTTTT
225088 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
225120 TTAGTTTAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:226895 original size:20 final size:20
Alignment explanation
Indices: 226870--226923 Score: 83
Period size: 20 Copynumber: 2.7 Consensus size: 20
226860 GTTTGAAGCA
226870 ATGTATCGATACAAT-TCATC
1 ATGTATCGATACAATAT-ATC
*
226890 ATGTATCGATACAATATGTC
1 ATGTATCGATACAATATATC
226910 ATGTATCGATACAA
1 ATGTATCGATACAA
226924 ACAGTGGTAG
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 31 0.97
21 1 0.03
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (20 bp):
ATGTATCGATACAATATATC
Found at i:226997 original size:20 final size:19
Alignment explanation
Indices: 226972--227022 Score: 77
Period size: 19 Copynumber: 2.6 Consensus size: 19
226962 TACAATTGTC
226972 CATGTATCGATACAATG-AA
1 CATGTATCGATAC-ATGAAA
226991 CATTGTATCGATACATGAAA
1 CA-TGTATCGATACATGAAA
227011 CATGTATCGATA
1 CATGTATCGATA
227023 TATTGTATCG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
19 15 0.50
20 15 0.50
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.29
Consensus pattern (19 bp):
CATGTATCGATACATGAAA
Found at i:227016 original size:19 final size:19
Alignment explanation
Indices: 226952--227022 Score: 81
Period size: 20 Copynumber: 3.6 Consensus size: 19
226942 CTGCCAGTTT
* **
226952 CATGTATTGATACAATTGTC
1 CATGTATCGATACAA-TGAA
226972 CATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
226991 CATTGTATCGATAC-ATGAAA
1 CA-TGTATCGATACAATG-AA
227011 CATGTATCGATA
1 CATGTATCGATA
227023 TATTGTATCG
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
19 17 0.37
20 29 0.63
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.32
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:228245 original size:22 final size:20
Alignment explanation
Indices: 228200--228247 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
228190 TTTGTTGATG
*
228200 ATTTTGATGAAAAATGAAGT
1 ATTTTGATGAAAAATGAAGA
228220 ATTTTGAAGTGAAAAAT-AAGA
1 ATTTTG-A-TGAAAAATGAAGA
*
228241 AATTTGA
1 ATTTTGA
228248 AAAAGATTTC
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
20 7 0.29
21 9 0.38
22 8 0.33
ACGTcount: A:0.48, C:0.00, G:0.19, T:0.33
Consensus pattern (20 bp):
ATTTTGATGAAAAATGAAGA
Found at i:228246 original size:21 final size:22
Alignment explanation
Indices: 228207--228248 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
228197 ATGATTTTGA
* *
228207 TGAAAAATGAAGTATTTTGAAG
1 TGAAAAATGAAGAAATTTGAAG
228229 TGAAAAAT-AAGAAATTTGAA
1 TGAAAAATGAAGAAATTTGAA
228249 AAAGATTTCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.52, C:0.00, G:0.19, T:0.29
Consensus pattern (22 bp):
TGAAAAATGAAGAAATTTGAAG
Found at i:228377 original size:13 final size:13
Alignment explanation
Indices: 228359--228384 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
228349 AGTAACCCTC
228359 GTATCGATACAAT
1 GTATCGATACAAT
228372 GTATCGATACAAT
1 GTATCGATACAAT
228385 ATCTGGGTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
GTATCGATACAAT
Found at i:234575 original size:20 final size:20
Alignment explanation
Indices: 234550--234607 Score: 75
Period size: 19 Copynumber: 3.0 Consensus size: 20
234540 TTGCTAGTTT
* *
234550 CATGTACCGATACAATTGTC
1 CATGTATCGATACAATTGTA
*
234570 CATGTATCGATACAA-TGAA
1 CATGTATCGATACAATTGTA
234589 CATGTATCGATAC-ATTGTA
1 CATGTATCGATACAATTGTA
234608 TCGATACAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
18 1 0.03
19 18 0.55
20 14 0.42
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (20 bp):
CATGTATCGATACAATTGTA
Found at i:234609 original size:13 final size:13
Alignment explanation
Indices: 234591--234615 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
234581 ACAATGAACA
234591 TGTATCGATACAT
1 TGTATCGATACAT
234604 TGTATCGATACA
1 TGTATCGATACA
234616 AAGTATAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:234632 original size:33 final size:32
Alignment explanation
Indices: 234572--234636 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 32
234562 CAATTGTCCA
*
234572 TGTATCGATACAATGAACATGTATCGATACAT
1 TGTATCGATACAAAGAACATGTATCGATACAT
234604 TGTATCGATACAAAGTATA-ATGTATCGATACAT
1 TGTATCGATACAAAG-A-ACATGTATCGATACAT
234637 CTAGGTGTGT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 14 0.47
33 15 0.50
34 1 0.03
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.32
Consensus pattern (32 bp):
TGTATCGATACAAAGAACATGTATCGATACAT
Found at i:239170 original size:50 final size:50
Alignment explanation
Indices: 239082--239204 Score: 176
Period size: 50 Copynumber: 2.4 Consensus size: 50
239072 TTAACTAGAT
*
239082 GTATCGATACA-TTGAGGTAAAAAGACAAAATGTATCGATACATTGAATAAG
1 GTATCGATACATTTG-GGT-AAAAGACAAAATGTATCGATACATTGAAAAAG
* *
239133 GTATCGATACATTTGGGTAAAAGACAAAATGTATCGATACGTTGAAAAAT
1 GTATCGATACATTTGGGTAAAAGACAAAATGTATCGATACATTGAAAAAG
* *
239183 GTATCAATACATCTGGGTAAAA
1 GTATCGATACATTTGGGTAAAA
239205 ATGTGATTTT
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
50 49 0.74
51 14 0.21
52 3 0.05
ACGTcount: A:0.43, C:0.11, G:0.20, T:0.27
Consensus pattern (50 bp):
GTATCGATACATTTGGGTAAAAGACAAAATGTATCGATACATTGAAAAAG
Found at i:240142 original size:30 final size:29
Alignment explanation
Indices: 240104--240365 Score: 82
Period size: 28 Copynumber: 9.1 Consensus size: 29
240094 CAAGCGACAT
*
240104 TGGG-TTTAGAAGGGTTGTCA-CAACTTGTG
1 TGGGCTTTAGAAGGGTTGCCACCAAC-T-TG
*
240133 TGGGCTTTAGAGAAGGTTGCCACCAACTTG
1 TGGGCTTTAGA-AGGGTTGCCACCAACTTG
* * ** *
240163 TGGGCTTTA-AAAGGATGCCACTGATTTG
1 TGGGCTTTAGAAGGGTTGCCACCAACTTG
* * * ** *
240191 TAGGC-TTCGAAAAGG-TGCCAATAACCTG
1 TGGGCTTTAG-AAGGGTTGCCACCAACTTG
* * * **
240219 TGGTCTTCAAAAGGG-TGCCACTGACTTG
1 TGGGCTTTAGAAGGGTTGCCACCAACTTG
* * *
240247 TAGGC-TTCGAAAGGG-TGCCACTAACTTG
1 TGGGCTTTAG-AAGGGTTGCCACCAACTTG
****
240275 TGGGCTTT-GAAAGGG-TGCCATTGGCTTG
1 TGGGCTTTAG-AAGGGTTGCCACCAACTTG
**
240303 TGGGCTTT-GAGAGAGGTTGCCACCGGCTTGGG
1 TGGGCTTTAGA-AG-GGTTGCCACCAACTT--G
* *
240335 TGGGC-TTA-AAGGGGTGCCACTAACTTG
1 TGGGCTTTAGAAGGGTTGCCACCAACTTG
240362 TGGG
1 TGGG
240366 ATTTCACTGA
Statistics
Matches: 182, Mismatches: 37, Indels: 30
0.73 0.15 0.12
Matches are distributed among these distances:
27 9 0.05
28 96 0.53
29 26 0.14
30 29 0.16
31 12 0.07
32 10 0.05
ACGTcount: A:0.21, C:0.18, G:0.33, T:0.28
Consensus pattern (29 bp):
TGGGCTTTAGAAGGGTTGCCACCAACTTG
Found at i:240191 original size:28 final size:28
Alignment explanation
Indices: 240131--241369 Score: 896
Period size: 28 Copynumber: 44.4 Consensus size: 28
240121 TCACAACTTG
* **
240131 TGTGGGCTTTAGAGAAGGTTGCCACCAACT
1 TGTGGGCTTTA-A-AAGGATGCCACTGACT
*
240161 TGTGGGCTTTAAAAGGATGCCACTGATT
1 TGTGGGCTTTAAAAGGATGCCACTGACT
* * * * *
240189 TGTAGGCTTCGAAAAGG-TGCCAATAACC
1 TGTGGGCTT-TAAAAGGATGCCACTGACT
* * *
240217 TGTGGTCTTCAAAAGGGTGCCACTGACT
1 TGTGGGCTTTAAAAGGATGCCACTGACT
* ** * *
240245 TGTAGGCTTCGAAAGGGTGCCACTAACT
1 TGTGGGCTTTAAAAGGATGCCACTGACT
* * * *
240273 TGTGGGCTTTGAAAGGGTGCCATTGGCT
1 TGTGGGCTTTAAAAGGATGCCACTGACT
* * * *
240301 TGTGGGCTTTGAGAGAGGTTGCCACCGGCT
1 TGTGGGCTTT-A-AAAGGATGCCACTGACT
* * *
240331 TGGGTGGGC-TTAAAGGGGTGCCACTAACT
1 T--GTGGGCTTTAAAAGGATGCCACTGACT
* * * *
240360 TGTGGGATTT--CA--CTG--ACTTA--
1 TGTGGGCTTTAAAAGGATGCCACTGACT
** * *
240380 TG-GGCTTTAAGAAGGATGCCACTGACT
1 TGTGGGCTTTAAAAGGATGCCACTGACT
*
240407 TGTGGGCTTTGAGAAGGATGCCACTGACT
1 TGTGGGCTTT-AAAAGGATGCCACTGACT
** *
240436 CATGGGCTTTGAAAA-GATGCCACTAACT
1 TGTGGGCTTT-AAAAGGATGCCACTGACT
* * *
240464 CGTGGGCTTTGAAAA-TATGCCGCTGACT
1 TGTGGGCTTT-AAAAGGATGCCACTGACT
*
240492 TATGGGCTTTAAAAAGGATGCCACTGACT
1 TGTGGGCTTT-AAAAGGATGCCACTGACT
* * *
240521 TGTGGGCTTTAAATGGACGCAACTGACT
1 TGTGGGCTTTAAAAGGATGCCACTGACT
* * *
240549 TGTGAGCTTTGAAAGAGGTTGCCACCGACT
1 TGTGGGCTTT-AAA-AGGATGCCACTGACT
* * *
240579 TAGGTGGGC-TTAAAGGGGTGCTACTGACT
1 T--GTGGGCTTTAAAAGGATGCCACTGACT
* *
240608 TATGGGCTTT-----GA-G-AACTGACT
1 TGTGGGCTTTAAAAGGATGCCACTGACT
* *
240629 TGTGGGCTTTGAGAAGGATGCCACTAACT
1 TGTGGGCTTT-AAAAGGATGCCACTGACT
* * *
240658 CGTGGGCTTTGAAAA-GATGCTACTGATT
1 TGTGGGCTTT-AAAAGGATGCCACTGACT
* * * *
240686 TATGGGCTTTGTCAAAGGATACCACTAACT
1 TGTGGGC-TT-TAAAAGGATGCCACTGACT
* * * * *
240716 TGCGAGCTTTAAACGAATGCCACTTACT
1 TGTGGGCTTTAAAAGGATGCCACTGACT
* *
240744 TGTAGGCTTTGAAAA-GATGCCATTGACT
1 TGTGGGCTTT-AAAAGGATGCCACTGACT
* *
240772 TATGGGCTTTGAAAAGG-TGCCACTAACT
1 TGTGGGCTTT-AAAAGGATGCCACTGACT
*
240800 TGTGGGCTTGGAAAA-GATGCCACTGACT
1 TGTGGGCTT-TAAAAGGATGCCACTGACT
* *
240828 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTAAAAGGATGCCACTGACT
* *
240856 TGTGGGCTTT-GAAGAGATGCCATTGACT
1 TGTGGGCTTTAAAAG-GATGCCACTGACT
*
240884 TGTGGGCTTTGAAAAGG-TGCCACTAACT
1 TGTGGGCTTT-AAAAGGATGCCACTGACT
240912 TGTGGGCTTTGAAAA-GATGCCACTGACT
1 TGTGGGCTTT-AAAAGGATGCCACTGACT
* * * *
240940 TGTGAGCTTTGAAATGG-TGCCACCGAGT
1 TGTGGGCTTT-AAAAGGATGCCACTGACT
*
240968 TGTGGACTTTGAAAA-GATGCCACTGACT
1 TGTGGGCTTT-AAAAGGATGCCACTGACT
* ** *
240996 CGTGGATTTTGAAAA-GATGCCACTAACT
1 TGTGGGCTTT-AAAAGGATGCCACTGACT
* * * *
241024 CGTGGACTTT-AAAGAGATGCCATTAACT
1 TGTGGGCTTTAAAAG-GATGCCACTGACT
*
241052 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTAAAAGGATGCCACTGACT
*
241080 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTAAAAGGATGCCACTGACT
**
241108 TGTGGGCTTTGACGAGG-TGCCACTGACT
1 TGTGGGCTTT-AAAAGGATGCCACTGACT
**
241136 TGTGGGCTTTGACGAGG-TGCCACTGACT
1 TGTGGGCTTT-AAAAGGATGCCACTGACT
* *
241164 TGTGGACTTTGAAAAGG-TGCCACTAACT
1 TGTGGGCTTT-AAAAGGATGCCACTGACT
* *
241192 TGTGGACTTTGAAAA-GATGCCACTAACT
1 TGTGGGCTTT-AAAAGGATGCCACTGACT
* *
241220 TGTGAGCTTTTAAAGGATGCCACTGACT
1 TGTGGGCTTTAAAAGGATGCCACTGACT
*
241248 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTAAAAGGATGCCACTGACT
* *
241276 TGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTAAAAGGATGCCACTGACT
* * *
241304 TGTGGACTTT-GAAGAGATGCCACTAACT
1 TGTGGGCTTTAAAAG-GATGCCACTGACT
* * *
241332 TATGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTAAAAGGATGCCACTGACT
241360 TGTGGGCTTT
1 TGTGGGCTTT
241370 TAAGAGATGA
Statistics
Matches: 988, Mismatches: 168, Indels: 108
0.78 0.13 0.09
Matches are distributed among these distances:
19 4 0.00
20 2 0.00
21 17 0.02
22 5 0.01
23 3 0.00
24 2 0.00
25 4 0.00
26 3 0.00
27 36 0.04
28 714 0.72
29 126 0.13
30 57 0.06
31 4 0.00
32 11 0.01
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (28 bp):
TGTGGGCTTTAAAAGGATGCCACTGACT
Found at i:240625 original size:21 final size:21
Alignment explanation
Indices: 240601--240643 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
240591 AAGGGGTGCT
240601 ACTGACTTATGGGCTTTGAGA
1 ACTGACTTATGGGCTTTGAGA
*
240622 ACTGACTTGTGGGCTTTGAGA
1 ACTGACTTATGGGCTTTGAGA
240643 A
1 A
240644 GGATGCCACT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.23, C:0.14, G:0.30, T:0.33
Consensus pattern (21 bp):
ACTGACTTATGGGCTTTGAGA
Found at i:241378 original size:28 final size:28
Alignment explanation
Indices: 240370--241378 Score: 1018
Period size: 28 Copynumber: 36.0 Consensus size: 28
240360 TGTGGGATTT
*
240370 CACTGACTTATGGGCTTT-AAGAAGGATGC
1 CACTGACTTGTGGGCTTTGAA-AA-GATGC
*
240399 CACTGACTTGTGGGCTTTGAGAAGGATGC
1 CACTGACTTGTGGGCTTTGA-AAAGATGC
**
240428 CACTGACTCATGGGCTTTGAAAAGATGC
1 CACTGACTTGTGGGCTTTGAAAAGATGC
* * *
240456 CACTAACTCGTGGGCTTTGAAAATATGC
1 CACTGACTTGTGGGCTTTGAAAAGATGC
* * *
240484 CGCTGACTTATGGGCTTTAAAAAGGATGC
1 CACTGACTTGTGGGCTTTGAAAA-GATGC
* *
240513 CACTGACTTGTGGGCTTT-AAATGGACGC
1 CACTGACTTGTGGGCTTTGAAA-AGATGC
* * *
240541 AACTGACTTGTGAGCTTTGAAAGAGGTTGC
1 CACTGACTTGTGGGCTTTGAAA-A-GATGC
* * *
240571 CACCGACTTAGGTGGGC-TT-AAAGGGGTGC
1 CACTGACTT--GTGGGCTTTGAAA-AGATGC
* *
240600 TACTGACTTATGGGCTTTG---AGA---
1 CACTGACTTGTGGGCTTTGAAAAGATGC
*
240622 -ACTGACTTGTGGGCTTTGAGAAGGATGC
1 CACTGACTTGTGGGCTTTGA-AAAGATGC
* *
240650 CACTAACTCGTGGGCTTTGAAAAGATGC
1 CACTGACTTGTGGGCTTTGAAAAGATGC
* * * * *
240678 TACTGATTTATGGGCTTTGTCAAAGGATAC
1 CACTGACTTGTGGGCTTTG--AAAAGATGC
* * * *
240708 CACTAACTTGCGAGCTTT-AAACGAATGC
1 CACTGACTTGTGGGCTTTGAAAAG-ATGC
* *
240736 CACTTACTTGTAGGCTTTGAAAAGATGC
1 CACTGACTTGTGGGCTTTGAAAAGATGC
* * *
240764 CATTGACTTATGGGCTTTGAAAAGGTGC
1 CACTGACTTGTGGGCTTTGAAAAGATGC
* *
240792 CACTAACTTGTGGGCTTGGAAAAGATGC
1 CACTGACTTGTGGGCTTTGAAAAGATGC
*
240820 CACTGACTTGTGGGCTTTGAAAGGATGC
1 CACTGACTTGTGGGCTTTGAAAAGATGC
* *
240848 CACTAACTTGTGGGCTTTGAAGAGATGC
1 CACTGACTTGTGGGCTTTGAAAAGATGC
* *
240876 CATTGACTTGTGGGCTTTGAAAAGGTGC
1 CACTGACTTGTGGGCTTTGAAAAGATGC
*
240904 CACTAACTTGTGGGCTTTGAAAAGATGC
1 CACTGACTTGTGGGCTTTGAAAAGATGC
* * *
240932 CACTGACTTGTGAGCTTTGAAATGGTGC
1 CACTGACTTGTGGGCTTTGAAAAGATGC
* * *
240960 CACCGAGTTGTGGACTTTGAAAAGATGC
1 CACTGACTTGTGGGCTTTGAAAAGATGC
* **
240988 CACTGACTCGTGGATTTTGAAAAGATGC
1 CACTGACTTGTGGGCTTTGAAAAGATGC
* * *
241016 CACTAACTCGTGGACTTT-AAAGAGATGC
1 CACTGACTTGTGGGCTTTGAAA-AGATGC
* * *
241044 CATTAACTTGTGGGCTTTGAAAGGATGC
1 CACTGACTTGTGGGCTTTGAAAAGATGC
*
241072 CACTGACTTGTGGGCTTTGAAAGGATGC
1 CACTGACTTGTGGGCTTTGAAAAGATGC
** *
241100 CACTGACTTGTGGGCTTTGACGAGGTGC
1 CACTGACTTGTGGGCTTTGAAAAGATGC
** *
241128 CACTGACTTGTGGGCTTTGACGAGGTGC
1 CACTGACTTGTGGGCTTTGAAAAGATGC
* *
241156 CACTGACTTGTGGACTTTGAAAAGGTGC
1 CACTGACTTGTGGGCTTTGAAAAGATGC
* *
241184 CACTAACTTGTGGACTTTGAAAAGATGC
1 CACTGACTTGTGGGCTTTGAAAAGATGC
* * * *
241212 CACTAACTTGTGAGCTTTTAAAGGATGC
1 CACTGACTTGTGGGCTTTGAAAAGATGC
*
241240 CACTGACTTGTGGGCTTTGAAAGGATGC
1 CACTGACTTGTGGGCTTTGAAAAGATGC
* *
241268 CACTGACTTGTGGGCTTTGAAAGGGTGC
1 CACTGACTTGTGGGCTTTGAAAAGATGC
* *
241296 CACTGACTTGTGGACTTTGAAGAGATGC
1 CACTGACTTGTGGGCTTTGAAAAGATGC
* * *
241324 CACTAACTTATGGGCTTTGAAAGGATGC
1 CACTGACTTGTGGGCTTTGAAAAGATGC
* * *
241352 CACTAACTTGTGGGCTTTTAAGAGATG
1 CACTGACTTGTGGGCTTTGAAAAGATG
241379 AACGTTCTAG
Statistics
Matches: 822, Mismatches: 134, Indels: 49
0.82 0.13 0.05
Matches are distributed among these distances:
21 17 0.02
25 3 0.00
27 12 0.01
28 649 0.79
29 98 0.12
30 35 0.04
31 3 0.00
32 5 0.01
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (28 bp):
CACTGACTTGTGGGCTTTGAAAAGATGC
Found at i:256561 original size:51 final size:51
Alignment explanation
Indices: 256505--256650 Score: 231
Period size: 50 Copynumber: 2.9 Consensus size: 51
256495 TTTTAACTGG
* * *
256505 ATGTATCGATACATTGAAAAATGCATCGATACATTTGGGTAAAAAGATAGA
1 ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGTAAAAAGACAGA
*
256556 ATGTATCGATACATTGAAGAATGTATCGATACATCTGGGT-AAAAGACAGA
1 ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGTAAAAAGACAGA
* *
256606 ATCTATCGATACATTGAAAAATGTATTGATACATCTGGGTAAAAA
1 ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGTAAAAA
256651 TGTGATTTTT
Statistics
Matches: 87, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
50 46 0.53
51 41 0.47
ACGTcount: A:0.42, C:0.11, G:0.19, T:0.28
Consensus pattern (51 bp):
ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGTAAAAAGACAGA
Found at i:258695 original size:32 final size:33
Alignment explanation
Indices: 258650--258736 Score: 90
Period size: 36 Copynumber: 2.6 Consensus size: 33
258640 ACTATCTTTT
*
258650 AAGGTTAAGATAGAAACCTCCCTATC-TTTTC-
1 AAGGCTAAGATAGAAACCTCCCTATCTTTTTCA
* *
258681 ACGGACTAAGATAGAACCTCTCTCCCTATCTTTTTCA
1 AAGG-CTAAGATAGAA--AC-CTCCCTATCTTTTTCA
258718 AAGGCTAAGATAG-AACCTC
1 AAGGCTAAGATAGAAACCTC
258737 TCAGTCATTT
Statistics
Matches: 45, Mismatches: 5, Indels: 11
0.74 0.08 0.18
Matches are distributed among these distances:
31 3 0.07
32 13 0.29
33 1 0.02
34 1 0.02
35 10 0.22
36 14 0.31
37 3 0.07
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.29
Consensus pattern (33 bp):
AAGGCTAAGATAGAAACCTCCCTATCTTTTTCA
Found at i:258711 original size:35 final size:36
Alignment explanation
Indices: 258667--258738 Score: 112
Period size: 36 Copynumber: 2.0 Consensus size: 36
258657 AGATAGAAAC
*
258667 CTCCCTATC-TTTTC-ACGGACTAAGATAGAACCTCT
1 CTCCCTATCTTTTTCAAAGG-CTAAGATAGAACCTCT
258702 CTCCCTATCTTTTTCAAAGGCTAAGATAGAACCTCT
1 CTCCCTATCTTTTTCAAAGGCTAAGATAGAACCTCT
258738 C
1 C
258739 AGTCATTTAG
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
35 9 0.26
36 22 0.65
37 3 0.09
ACGTcount: A:0.26, C:0.31, G:0.11, T:0.32
Consensus pattern (36 bp):
CTCCCTATCTTTTTCAAAGGCTAAGATAGAACCTCT
Found at i:259250 original size:22 final size:22
Alignment explanation
Indices: 259187--259251 Score: 94
Period size: 22 Copynumber: 3.0 Consensus size: 22
259177 TACTATTCAC
* *
259187 ATGTATCGATACATGAACAATG
1 ATGTATCGATACATCAACAGTG
259209 ATGTATCGATACATCAACAGTG
1 ATGTATCGATACATCAACAGTG
* *
259231 ATGTATTGATATATCAACAGT
1 ATGTATCGATACATCAACAGT
259252 AATGCATCAA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 39 1.00
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.31
Consensus pattern (22 bp):
ATGTATCGATACATCAACAGTG
Found at i:261857 original size:16 final size:15
Alignment explanation
Indices: 261836--261865 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
261826 ATCTTACACT
261836 TAGAATAGAAATATAG
1 TAGAATAG-AATATAG
261852 TAGAATAGAATATA
1 TAGAATAGAATATA
261866 AAATTAACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.57, C:0.00, G:0.17, T:0.27
Consensus pattern (15 bp):
TAGAATAGAATATAG
Found at i:262407 original size:21 final size:21
Alignment explanation
Indices: 262367--262407 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
262357 GGTTTTAAAT
*
262367 ATTTTATTAAATATATTTTAA
1 ATTTTATTAAATATAATTTAA
262388 ATTTT-TTAAATATTAATTTA
1 ATTTTATTAAATA-TAATTTA
262408 GTTAATTCAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (21 bp):
ATTTTATTAAATATAATTTAA
Found at i:262795 original size:16 final size:16
Alignment explanation
Indices: 262773--262841 Score: 66
Period size: 16 Copynumber: 4.3 Consensus size: 16
262763 AACTTGAACT
262773 CGAATAAGCCCAAACC
1 CGAATAAGCCCAAACC
* * *
262789 TGAATAAGCTCGAACC
1 CGAATAAGCCCAAACC
* *
262805 CAAAAAAGCCCAAACC
1 CGAATAAGCCCAAACC
* *
262821 CAAATAAGCCCGAACC
1 CGAATAAGCCCAAACC
*
262837 TGAAT
1 CGAAT
262842 TAGCTCGACC
Statistics
Matches: 41, Mismatches: 12, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
16 41 1.00
ACGTcount: A:0.45, C:0.32, G:0.13, T:0.10
Consensus pattern (16 bp):
CGAATAAGCCCAAACC
Found at i:262883 original size:16 final size:16
Alignment explanation
Indices: 262831--262919 Score: 58
Period size: 16 Copynumber: 5.6 Consensus size: 16
262821 CAAATAAGCC
*
262831 CGAACCTGAATTAGCT
1 CGAACCTGAATGAGCT
* *
262847 CG-ACCCGAACGAGC-
1 CGAACCTGAATGAGCT
*
262861 CTAAACCTGAATGAGCT
1 C-GAACCTGAATGAGCT
*
262878 CGAACCTAAATGAGC-
1 CGAACCTGAATGAGCT
* * *
262893 CCAAACTCGAACGAGCT
1 CGAACCT-GAATGAGCT
*
262910 CGAATCTGAA
1 CGAACCTGAA
262920 CCTGCTCGAA
Statistics
Matches: 54, Mismatches: 14, Indels: 10
0.69 0.18 0.13
Matches are distributed among these distances:
14 1 0.02
15 14 0.26
16 33 0.61
17 6 0.11
ACGTcount: A:0.35, C:0.29, G:0.20, T:0.16
Consensus pattern (16 bp):
CGAACCTGAATGAGCT
Found at i:266296 original size:1 final size:1
Alignment explanation
Indices: 266292--266317 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
266282 TTTTTTTTTT
266292 GGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGG
266318 ATGTGTTTAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:0.00, C:0.00, G:1.00, T:0.00
Consensus pattern (1 bp):
G
Found at i:266495 original size:19 final size:20
Alignment explanation
Indices: 266473--266545 Score: 60
Period size: 22 Copynumber: 3.4 Consensus size: 20
266463 TGAATATAAG
266473 TATAATTTTTAATTT-TTAA
1 TATAATTTTTAATTTATTAA
266492 TATATATTGTATT-ATTTAATATAAA
1 TATA-ATT-T-TTAATTT-AT-T-AA
266517 TATAATTTTAATAATTTATTAA
1 TATAATTTT--TAATTTATTAA
266539 TATAATT
1 TATAATT
266546 ATAATTTTTA
Statistics
Matches: 44, Mismatches: 0, Indels: 17
0.72 0.00 0.28
Matches are distributed among these distances:
19 4 0.09
20 3 0.07
21 5 0.11
22 12 0.27
23 3 0.07
24 7 0.16
25 10 0.23
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.56
Consensus pattern (20 bp):
TATAATTTTTAATTTATTAA
Found at i:266548 original size:28 final size:28
Alignment explanation
Indices: 266507--266561 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
266497 ATTGTATTAT
266507 TTAATATAAATATAA-TTTTAATAATTTA
1 TTAATATAAATATAATTTTTAA-AATTTA
*
266535 TTAATATAATTATAATTTTTAAAATTT
1 TTAATATAAATATAATTTTTAAAATTT
266562 TAATACATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
28 19 0.76
29 6 0.24
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (28 bp):
TTAATATAAATATAATTTTTAAAATTTA
Found at i:266561 original size:37 final size:37
Alignment explanation
Indices: 266451--266566 Score: 98
Period size: 37 Copynumber: 3.2 Consensus size: 37
266441 GTAAGTAATT
* * *
266451 TTTTAATAATTT-TGAATATAAGTATAATTTTT-AAT
1 TTTTAATAATTTATTAATATAATTATAATTTTTAAAA
* * * ** *
266486 TTTTAAT-ATATATT-GTATTATT-TAATATAAATATAA
1 TTTTAATAATTTATTAATATAATTATAAT-T-TTTAAAA
266522 TTTTAATAATTTATTAATATAATTATAATTTTTAAAA
1 TTTTAATAATTTATTAATATAATTATAATTTTTAAAA
266559 TTTTAATA
1 TTTTAATA
266567 CATATTTTAT
Statistics
Matches: 59, Mismatches: 15, Indels: 12
0.69 0.17 0.14
Matches are distributed among these distances:
33 4 0.07
34 9 0.15
35 9 0.15
36 8 0.14
37 18 0.31
38 7 0.12
39 4 0.07
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (37 bp):
TTTTAATAATTTATTAATATAATTATAATTTTTAAAA
Found at i:266578 original size:73 final size:71
Alignment explanation
Indices: 266451--266607 Score: 242
Period size: 73 Copynumber: 2.2 Consensus size: 71
266441 GTAAGTAATT
* *
266451 TTTTAATAATTTTGAATATAAGTATAATTTTTAATTTTTAATATATATTGTATTATTTAATATAA
1 TTTTAATAATTTTGAATATAAGTATAATTTTTAAATTTTAATACATATTGTATTATTTAATATAA
266516 ATATAA
66 ATATAA
* * * *
266522 TTTTAATAATTTATTAATATAATTATAATTTTTAAAATTTTAATACATATTTTATTATTTAATGT
1 TTTTAATAATTT-TGAATATAAGTATAATTTTT-AAATTTTAATACATATTGTATTATTTAATAT
266587 AAATATAA
64 AAATATAA
266595 TTTTAATAATTTT
1 TTTTAATAATTTT
266608 TTTAGTATAA
Statistics
Matches: 78, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
71 12 0.15
72 19 0.24
73 47 0.60
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.55
Consensus pattern (71 bp):
TTTTAATAATTTTGAATATAAGTATAATTTTTAAATTTTAATACATATTGTATTATTTAATATAA
ATATAA
Found at i:266602 original size:36 final size:34
Alignment explanation
Indices: 266486--266719 Score: 150
Period size: 35 Copynumber: 6.5 Consensus size: 34
266476 AATTTTTAAT
*
266486 TTTTAATATATATTGTATTATTTAATATAAATATAA
1 TTTTAATA-AT-TTTTATTATTTAATATAAATATAA
** *
266522 TTTTAATAATTTATTAATATAATTATAAT-T-TTTAAAA
1 TTTTAATAATTT-TT-AT-T-ATT-TAATATAAATATAA
*
266559 TTTTAATACATATTTTATTATTTAATGTAAATATAA
1 TTTTAATA-AT-TTTTATTATTTAATATAAATATAA
* * * *
266595 TTTTAATAATTTTT-TTAGTATAAAAATAATTCAATAT
1 TTTTAATAATTTTTATTA-T-TTAATATAAAT--ATAA
* * * *
266632 TTTCTAATCATTATTATTATTCAACATAAATATAA
1 TTT-TAATAATTTTTATTATTTAATATAAATATAA
* *
266667 TTTTATTTATATTTTATTATTTAATATAAATATAAA
1 TTTTAATAAT-TTTTATTATTTAATATAAATAT-AA
*
266703 TTTTAATTATTTATTAT
1 TTTTAATAATTT-TTAT
266720 ATATCTGCAC
Statistics
Matches: 156, Mismatches: 24, Indels: 36
0.72 0.11 0.17
Matches are distributed among these distances:
33 3 0.02
34 16 0.10
35 43 0.28
36 38 0.24
37 29 0.19
38 18 0.12
39 9 0.06
ACGTcount: A:0.42, C:0.03, G:0.01, T:0.54
Consensus pattern (34 bp):
TTTTAATAATTTTTATTATTTAATATAAATATAA
Found at i:269392 original size:20 final size:18
Alignment explanation
Indices: 269351--269395 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 18
269341 CTAAGATTAG
*
269351 TTAAT-ATATTATTTATA
1 TTAATAATATTATTTAAA
269368 TTAATAATATTATATTAAA
1 TTAATAATATTAT-TTAAA
269387 TGTAATAAT
1 T-TAATAAT
269396 TAAATTTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 5 0.21
18 7 0.29
19 5 0.21
20 7 0.29
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (18 bp):
TTAATAATATTATTTAAA
Found at i:270214 original size:32 final size:32
Alignment explanation
Indices: 270166--270236 Score: 106
Period size: 32 Copynumber: 2.2 Consensus size: 32
270156 CTTTTAAATT
* * *
270166 GATACATTACTATTCATTATTGTTCATGTATC
1 GATACATCACTATTCATCACTGTTCATGTATC
*
270198 GATACATCACTGTTCATCACTGTTCATGTATC
1 GATACATCACTATTCATCACTGTTCATGTATC
270230 GATACAT
1 GATACAT
270237 TGAGCCCAAC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.28, C:0.20, G:0.11, T:0.41
Consensus pattern (32 bp):
GATACATCACTATTCATCACTGTTCATGTATC
Found at i:270309 original size:20 final size:20
Alignment explanation
Indices: 270266--270309 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
270256 TTCAAATGCA
* *
270266 TGTATCGATACATTATGAAT
1 TGTATCGATACATTAGGAAG
270286 TGTATCGATACA-TAGGAACG
1 TGTATCGATACATTAGGAA-G
270306 TGTA
1 TGTA
270310 AGTGCGGAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 5 0.24
20 16 0.76
ACGTcount: A:0.34, C:0.11, G:0.20, T:0.34
Consensus pattern (20 bp):
TGTATCGATACATTAGGAAG
Found at i:273560 original size:20 final size:20
Alignment explanation
Indices: 273535--273605 Score: 142
Period size: 20 Copynumber: 3.5 Consensus size: 20
273525 AACTAGATGA
273535 ATCGATACATTGAAAAATGT
1 ATCGATACATTGAAAAATGT
273555 ATCGATACATTGAAAAATGT
1 ATCGATACATTGAAAAATGT
273575 ATCGATACATTGAAAAATGT
1 ATCGATACATTGAAAAATGT
273595 ATCGATACATT
1 ATCGATACATT
273606 TCGGTAAAAG
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 51 1.00
ACGTcount: A:0.44, C:0.11, G:0.14, T:0.31
Consensus pattern (20 bp):
ATCGATACATTGAAAAATGT
Found at i:273984 original size:10 final size:10
Alignment explanation
Indices: 273969--273993 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
273959 TATTGCACCC
273969 TTTTTTTCTT
1 TTTTTTTCTT
273979 TTTTTTTCTT
1 TTTTTTTCTT
273989 TTTTT
1 TTTTT
273994 ATAAATCTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (10 bp):
TTTTTTTCTT
Found at i:274630 original size:28 final size:28
Alignment explanation
Indices: 274501--275215 Score: 767
Period size: 28 Copynumber: 24.9 Consensus size: 28
274491 TTTAAAAAAA
*
274501 GGTGCCACTAACTTGTGTGGGCTTTGAAAAG
1 GGTGCCACTGAC-T-TGTGGGCTTTG-AAAG
* * *
274532 AGTTGCCACCGACTCGTGTGGGATTTGAAAAG
1 -GGTGCCACTGACT--TGTGGGCTTTG-AAAG
* *
274564 AGTTGCCACTGGCTTGTGGGCTTTGAAAAG
1 -GGTGCCACTGACTTGTGGGCTTTG-AAAG
* *
274594 AGTGCCACTAACTTGTGGGCTTTGAAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
*
274622 GGTGCCACTGACTTGTGGGCTTTGAAAA
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
** * * *
274650 AATACCACTAACTTGTGGGCTTTGAAAA
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
*
274678 GGTGCCACTAACTTGTGGGCTTTTGAAAG
1 GGTGCCACTGACTTGTGGGC-TTTGAAAG
274707 GGTGCCACTGACTTGTGGGCTTTGAAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
* * *
274735 GATGCCATTGACTTGTAGGCTTTGAAAAG
1 GGTGCCACTGACTTGTGGGCTTTG-AAAG
* *
274764 AGTGCCACTGACTTGTGGGCTTTAAAAAG
1 GGTGCCACTGACTTGTGGGCTTT-GAAAG
* * *
274793 AGTACCACTGACTTGTGGGTTTTGAAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
* *
274821 GGTGCCACTGACTTATGGGCTTTGAAAA
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
* *
274849 GGTGCCACTAACTTGTGGGCTTTAAAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
*
274877 GATGCCACTGACTTGTGGGCTTTGGAAAG
1 GGTGCCACTGACTTGTGGGCTTT-GAAAG
* * *
274906 AGTTACCACCGA----TGGGCTTTGAAAG
1 -GGTGCCACTGACTTGTGGGCTTTGAAAG
* * *
274931 GATGCCACTAACTTGTGGGCTTTGAAAATA
1 GGTGCCACTGACTTGTGGGCTTTG-AAA-G
* *
274961 GTTGCCACCGACTTGTATGGGCTTTGAAAAG
1 GGTGCCACTGACTTG--TGGGCTTTG-AAAG
274992 GGTGCCACTGACTTGTGGGCTTTGAAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
* *
275020 GGTACCACTAACTTGTGGGCTTTGAAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
* *
275048 GATGCCACTGACTTGTAGGCTTTGAAAAG
1 GGTGCCACTGACTTGTGGGCTTTG-AAAG
* *
275077 AGTTACCACT-AGCTTGTGGGCTTTGAAAG
1 -GGTGCCACTGA-CTTGTGGGCTTTGAAAG
*
275106 GGTGCCATTGACTTGTGGGCTTTGAAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
* *
275134 GGTGCCACTAACTTGTGGGCTTTAAAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
275162 GGTGCCAC-GAACTTGTGGGCTTTGAAAG
1 GGTGCCACTG-ACTTGTGGGCTTTGAAAG
*
275190 GGTGCCACTAACTTGTGGGCTTTGAA
1 GGTGCCACTGACTTGTGGGCTTTGAA
275216 GAGATGAATG
Statistics
Matches: 585, Mismatches: 78, Indels: 44
0.83 0.11 0.06
Matches are distributed among these distances:
24 7 0.01
25 5 0.01
26 8 0.01
28 327 0.56
29 120 0.21
30 54 0.09
31 14 0.02
32 50 0.09
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.29
Consensus pattern (28 bp):
GGTGCCACTGACTTGTGGGCTTTGAAAG
Found at i:274769 original size:142 final size:141
Alignment explanation
Indices: 274496--275215 Score: 837
Period size: 142 Copynumber: 5.0 Consensus size: 141
274486 TTTTTTTTAA
* * * *
274496 AAAAAGGTGCCACTAACTTGTGTGGGCTTTGAAAAGAGTTGCCACCGACTCGTGTGGGATTTGAA
1 AAAAAGATACCACTAAC-T-TGTGGGCTTTGAAAAG-G-TGCCACTGACT--TGTGGGCTTTG-A
* * * * *
274561 AAGAGTTGCCACTGGCTTGTGGGCTTTGAAAAGAGTGCCACTAACTTGTGGGCTTTGAAAGGGTG
59 AAG-GGTGCCACTGACTTGTGGGCTTTGAAAGGA-TGCCACTGACTTGTGGGCTTTGAAAGAGTG
274626 CCACTGACTTGTGGGCTTTG
122 CCACTGACTTGTGGGCTTTG
*
274646 AAAAA-ATACCACTAACTTGTGGGCTTTGAAAAGGTGCCACTAACTTGTGGGCTTTTGAAAGGGT
1 AAAAAGATACCACTAACTTGTGGGCTTTGAAAAGGTGCCACTGACTTGTGGGC-TTTGAAAGGGT
* *
274710 GCCACTGACTTGTGGGCTTTGAAAGGATGCCATTGACTTGTAGGCTTTGAAAAGAGTGCCACTGA
65 GCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTG-AAAGAGTGCCACTGA
274775 CTTGTGGGCTTT-
129 CTTGTGGGCTTTG
* * * * *
274787 AAAAAGAGTACCACTGACTTGTGGGTTTTGAAAGGGTGCCACTGACTTATGGGCTTTGAAAAGGT
1 AAAAAGA-TACCACTAACTTGTGGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTTGAAAGGGT
* * * *
274852 GCCACTAACTTGTGGGCTTTAAAAGGATGCCACTGACTTGTGGGCTTTGGAAAGAGTTACCACCG
65 GCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTT-GAAAGAG-TGCCACTG
274917 A----TGGGCTTTG
128 ACTTGTGGGCTTTG
* * * *
274927 -AAAGGATGCCACTAACTTGTGGGCTTTGAAAATAGTTGCCACCGACTTGTATGGGCTTTGAAAA
1 AAAAAGATACCACTAACTTGTGGGCTTTG-AAA-AGGTGCCACTGACTTG--TGGGCTTTG-AAA
* * *
274991 GGGTGCCACTGACTTGTGGGCTTTGAAAGGGTACCACTAACTTGTGGGCTTTGAAAG-GATGCCA
61 GGGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGAG-TGCCA
*
275055 CTGACTTGTAGGCTTTG
125 CTGACTTGTGGGCTTTG
* * * *
275072 AAAAGAGTTACCACTAGCTTGTGGGCTTTGAAAGGGTGCCATTGACTTGTGGGCTTTGAAAGGGT
1 AAAA-AGATACCACTAACTTGTGGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTTGAAAGGGT
* * * * *
275137 GCCACTAACTTGTGGGCTTTAAAAGGGTGCCAC-GAACTTGTGGGCTTTGAAAGGGTGCCACTAA
65 GCCACTGACTTGTGGGCTTTGAAAGGATGCCACTG-ACTTGTGGGCTTTGAAAGAGTGCCACTGA
275201 CTTGTGGGCTTTG
129 CTTGTGGGCTTTG
275214 AA
1 AA
275216 GAGATGAATG
Statistics
Matches: 494, Mismatches: 56, Indels: 48
0.83 0.09 0.08
Matches are distributed among these distances:
138 19 0.04
139 16 0.03
140 12 0.02
141 32 0.06
142 205 0.41
143 118 0.24
144 4 0.01
145 29 0.06
146 7 0.01
147 37 0.07
148 1 0.00
149 9 0.02
150 5 0.01
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.29
Consensus pattern (141 bp):
AAAAAGATACCACTAACTTGTGGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTTGAAAGGGTG
CCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGAGTGCCACTGACT
TGTGGGCTTTG
Found at i:274984 original size:199 final size:195
Alignment explanation
Indices: 274548--275215 Score: 839
Period size: 199 Copynumber: 3.4 Consensus size: 195
274538 CACCGACTCG
* * *
274548 TGTGGGATTTGAAAAGAGTTGCCACTGGCTTGTGGGCTTTGAAAAGAGTGCCACTAACTTGTGGG
1 TGTGGGCTTTGAAAAGAGTTGCCACCGACTTGTGGGCTTTGAAAAGAGTGCCACTAACTTGTGGG
** *
274613 CTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAAATACCACTAACTTGTGGGCTTTGAAAA
66 CTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGGTGCCACTAACTTGTGGGCTTTGAAAA
*
274678 GGTGCCACTAACTTGTGGGCTTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCAT
131 GGTGCCACT-ACTTGTGGGC-TTTGAAAGGGTGCCACTGA--T-TGGGCTTTGAAAGGATGCCAC
*
274743 TGACT
191 TAACT
* * * * *
274748 TGTAGGCTTTGAAAAGAG-TGCCACTGACTTGTGGGCTTTAAAAAGAGTACCACTGACTTGTGGG
1 TGTGGGCTTTGAAAAGAGTTGCCACCGACTTGTGGGCTTTGAAAAGAGTGCCACTAACTTGTGGG
* *
274812 TTTTGAAAGGGTGCCACTGACTTATGGGCTTTGAAAAGGTGCCACTAACTTGTGGGCTTT-AAAA
66 CTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGGTGCCACTAACTTGTGGGCTTTGAAAA
* * *
274876 GGATGCCACTGACTTGTGGGCTTTGGAAAGAGTTACCACCGA-TGGGCTTTGAAAGGATGCCACT
131 GG-TGCCACT-ACTTGTGGGCTTT-GAAAG-GGTGCCACTGATTGGGCTTTGAAAGGATGCCACT
274940 AACT
192 AACT
* * *
274944 TGTGGGCTTTGAAAATAGTTGCCACCGACTTGTATGGGCTTTGAAAAGGGTGCCACTGACTTGTG
1 TGTGGGCTTTGAAAAGAGTTGCCACCGACTTG--TGGGCTTTGAAAAGAGTGCCACTAACTTGTG
* * * *
275009 GGCTTTGAAAGGGTACCACTAACTTGTGGGCTTTG-AAAGGATGCCACTGACTTGTAGGCTTTGA
64 GGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGG-TGCCACTAACTTGTGGGCTTTGA
* * *
275073 AAAGAGTTACCACTAGCTTGTGGGCTTTGAAAGGGTGCCATTGACTTGTGGGCTTTGAAAGGGTG
128 AAAG-G-TGCCACTA-CTTGTGGGCTTTGAAAGGGTGCCACTGA--T-TGGGCTTTGAAAGGATG
275138 CCACTAACT
187 CCACTAACT
* *
275147 TGTGGGCTTT-AAAAG-GGTGCCA-CGAACTTGTGGGCTTTG-AAAGGGTGCCACTAACTTGTGG
1 TGTGGGCTTTGAAAAGAGTTGCCACCG-ACTTGTGGGCTTTGAAAAGAGTGCCACTAACTTGTGG
275208 GCTTTGAA
65 GCTTTGAA
275216 GAGATGAATG
Statistics
Matches: 414, Mismatches: 39, Indels: 32
0.85 0.08 0.07
Matches are distributed among these distances:
196 40 0.10
197 12 0.03
198 43 0.10
199 213 0.51
200 37 0.09
201 30 0.07
202 4 0.01
203 35 0.08
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.29
Consensus pattern (195 bp):
TGTGGGCTTTGAAAAGAGTTGCCACCGACTTGTGGGCTTTGAAAAGAGTGCCACTAACTTGTGGG
CTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGGTGCCACTAACTTGTGGGCTTTGAAAA
GGTGCCACTACTTGTGGGCTTTGAAAGGGTGCCACTGATTGGGCTTTGAAAGGATGCCACTAACT
Found at i:276451 original size:12 final size:11
Alignment explanation
Indices: 276432--276502 Score: 52
Period size: 12 Copynumber: 5.9 Consensus size: 11
276422 GACCCCTTTC
276432 TGTTTTTTTTGT
1 TGTTTTTTTT-T
*
276444 TATTTTTTTCTT
1 TGTTTTTTT-TT
*
276456 GGTTTTTTTGTT
1 TGTTTTTTT-TT
*
276468 TTTTTTGGTTTTT
1 TGTTTT--TTTTT
*
276481 TCTATTTTTTTT
1 TGT-TTTTTTTT
276493 TGTTTTTTTT
1 TGTTTTTTTT
276503 GGGGTATGAA
Statistics
Matches: 47, Mismatches: 8, Indels: 9
0.73 0.12 0.14
Matches are distributed among these distances:
11 7 0.15
12 29 0.62
13 5 0.11
14 6 0.13
ACGTcount: A:0.03, C:0.03, G:0.11, T:0.83
Consensus pattern (11 bp):
TGTTTTTTTTT
Found at i:276479 original size:29 final size:29
Alignment explanation
Indices: 276447--276504 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
276437 TTTTTGTTAT
276447 TTTTTTCT-TGGTTTTTTTGTTTTTTTTGG
1 TTTTTTCTAT-GTTTTTTTGTTTTTTTTGG
*
276476 TTTTTTCTATTTTTTTTTGTTTTTTTTGG
1 TTTTTTCTATGTTTTTTTGTTTTTTTTGG
276505 GGTATGAAGG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 26 0.96
30 1 0.04
ACGTcount: A:0.02, C:0.03, G:0.14, T:0.81
Consensus pattern (29 bp):
TTTTTTCTATGTTTTTTTGTTTTTTTTGG
Found at i:276502 original size:9 final size:9
Alignment explanation
Indices: 276447--276503 Score: 62
Period size: 9 Copynumber: 6.0 Consensus size: 9
276437 TTTTTGTTAT
276447 TTTTTTCTTG
1 TTTTTT-TTG
*
276457 GTTTTTTTG
1 TTTTTTTTG
276466 TTTTTTTTGG
1 TTTTTTTT-G
276476 TTTTTTCTAT-
1 TTTTTT-T-TG
276486 TTTTTTTTG
1 TTTTTTTTG
276495 TTTTTTTTG
1 TTTTTTTTG
276504 GGGTATGAAG
Statistics
Matches: 41, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
8 1 0.02
9 20 0.49
10 18 0.44
11 1 0.02
12 1 0.02
ACGTcount: A:0.02, C:0.04, G:0.12, T:0.82
Consensus pattern (9 bp):
TTTTTTTTG
Found at i:284897 original size:13 final size:13
Alignment explanation
Indices: 284879--284904 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
284869 TACATAAAAT
284879 ATGTATCGATACA
1 ATGTATCGATACA
284892 ATGTATCGATACA
1 ATGTATCGATACA
284905 TATTTTTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:284987 original size:13 final size:13
Alignment explanation
Indices: 284969--284993 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
284959 ATTACTCATA
284969 TGTATCGATACAT
1 TGTATCGATACAT
284982 TGTATCGATACA
1 TGTATCGATACA
284994 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:285058 original size:52 final size:52
Alignment explanation
Indices: 285002--285126 Score: 232
Period size: 52 Copynumber: 2.4 Consensus size: 52
284992 CACTGATCTT
285002 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
*
285054 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
*
285106 TGTATCGATACATGCAAGCAA
1 TGTATCGATACATGCAGGCAA
285127 CTTTTCATAT
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 71 1.00
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
Found at i:292969 original size:22 final size:22
Alignment explanation
Indices: 292937--292990 Score: 72
Period size: 22 Copynumber: 2.4 Consensus size: 22
292927 TGGACTAAAG
*
292937 CTTCTTGTTTTTTTTGCTTTTCT
1 CTTCTT-TTTTTTTTGCTTTTAT
*
292960 CTTCTTTTTTTTTTTCTTTTAT
1 CTTCTTTTTTTTTTGCTTTTAT
*
292982 GTTCTTTTT
1 CTTCTTTTT
292991 CCCATGACTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
22 22 0.79
23 6 0.21
ACGTcount: A:0.02, C:0.15, G:0.06, T:0.78
Consensus pattern (22 bp):
CTTCTTTTTTTTTTGCTTTTAT
Found at i:293989 original size:20 final size:21
Alignment explanation
Indices: 293960--294012 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 21
293950 TTCTATAATT
* **
293960 TGTATTGATACAT-TCACTTA
1 TGTATCGATACATGTCACAAA
*
293980 TGTATCGATACATGTCTCAAA
1 TGTATCGATACATGTCACAAA
294001 TGTATCGATACA
1 TGTATCGATACA
294013 GGACTATCTT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 12 0.43
21 16 0.57
ACGTcount: A:0.32, C:0.17, G:0.13, T:0.38
Consensus pattern (21 bp):
TGTATCGATACATGTCACAAA
Found at i:294066 original size:20 final size:20
Alignment explanation
Indices: 294041--294092 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
294031 GTAAAAAAAT
294041 TGTATCGATACA-TAAGTAAA
1 TGTATCGATACATTAAG-AAA
**
294061 TGTATCGATACATTCCGAAA
1 TGTATCGATACATTAAGAAA
294081 TGTATCGATACA
1 TGTATCGATACA
294093 ATTTGCTTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 27 0.93
21 2 0.07
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (20 bp):
TGTATCGATACATTAAGAAA
Found at i:296660 original size:17 final size:17
Alignment explanation
Indices: 296640--296672 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
296630 TTTTCCTTTT
296640 TCTTCTTTTC-TTCTTAA
1 TCTT-TTTTCTTTCTTAA
296657 TCTTTTTTCTTTCTTA
1 TCTTTTTTCTTTCTTA
296673 CCTAACCAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.09, C:0.21, G:0.00, T:0.70
Consensus pattern (17 bp):
TCTTTTTTCTTTCTTAA
Found at i:297748 original size:48 final size:48
Alignment explanation
Indices: 297676--297797 Score: 181
Period size: 48 Copynumber: 2.5 Consensus size: 48
297666 CAATATGCCA
** *
297676 ATTCAAGGCCAGCGACATCAAGCTAAGGGAAAAGTAGACAATGTGCTG
1 ATTCAAGGCCAGCGACATTGAGCTAAGGGAAAAATAGACAATGTGCTG
* * *
297724 ATTCAAAGCCAACGACATTGAGCTAAGGGAAAAATGGACAATGTGCTG
1 ATTCAAGGCCAGCGACATTGAGCTAAGGGAAAAATAGACAATGTGCTG
*
297772 ATTCAAGGCCAGTGACATTGAGCTAA
1 ATTCAAGGCCAGCGACATTGAGCTAA
297798 TAAAGGTGCC
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 65 1.00
ACGTcount: A:0.38, C:0.18, G:0.25, T:0.19
Consensus pattern (48 bp):
ATTCAAGGCCAGCGACATTGAGCTAAGGGAAAAATAGACAATGTGCTG
Found at i:297925 original size:33 final size:33
Alignment explanation
Indices: 297888--297961 Score: 87
Period size: 32 Copynumber: 2.3 Consensus size: 33
297878 ATCGACTTGC
*
297888 GTGGGCTTTTCAAAAAAGGTGCCACTAACTTAT
1 GTGGGCTTTTCAAAAAAGGTGCCACCAACTTAT
* * * *
297921 GTGGGC-TTTGAAAAGAGTTGCCACCGACTTAT
1 GTGGGCTTTTCAAAAAAGGTGCCACCAACTTAT
*
297953 ATGGGCTTT
1 GTGGGCTTT
297962 AAAAGAGTGA
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
32 26 0.76
33 8 0.24
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.31
Consensus pattern (33 bp):
GTGGGCTTTTCAAAAAAGGTGCCACCAACTTAT
Found at i:297951 original size:32 final size:30
Alignment explanation
Indices: 297901--298693 Score: 449
Period size: 28 Copynumber: 26.9 Consensus size: 30
297891 GGCTTTTCAA
*
297901 AAAAGG-TGCCACTAACTTATGTGGGCTTTG
1 AAAAGGTTGCCACTGACTT-TGTGGGCTTTG
* *
297931 AAAAGAGTTGCCACCGACTTATATGGGCTTT-
1 AAAAG-GTTGCCACTGACTT-TGTGGGCTTTG
* *
297962 AAAAGAG-TGACACTGAC-TTGTAGGCTTTG
1 AAAAG-GTTGCCACTGACTTTGTGGGCTTTG
* *
297991 AAAAAAGAGTTGCCACCGACTTGTGTGGGCATTG
1 --AAAAG-GTTGCCACTGACTT-TGTGGGCTTTG
* *
298025 -AAAGGATGCCACTGAC-TTGTGGGCTTTA
1 AAAAGGTTGCCACTGACTTTGTGGGCTTTG
*
298053 AAAAGGATGCCACTGAC-TTGTGGGCTTTG
1 AAAAGGTTGCCACTGACTTTGTGGGCTTTG
* * * * *
298082 AAAA-GATGTCATTGTC-TTGTGGGCATTG
1 AAAAGGTTGCCACTGACTTTGTGGGCTTTG
*
298110 AAAAGG-TGCCGCTGAC-TTGTGGGCTTTG
1 AAAAGGTTGCCACTGACTTTGTGGGCTTTG
* * *
298138 AAAGGGTATGCCACT-AATTTATGGGCTTTG
1 AAAAGGT-TGCCACTGACTTTGTGGGCTTTG
* *
298168 -AAAGGGTGCCACTAAC-TTGTGGGCTTTG
1 AAAAGGTTGCCACTGACTTTGTGGGCTTTG
* ** *
298196 -GAAGGGCGCCACTGAC-TTGTGGG-TTTT
1 AAAAGGTTGCCACTGACTTTGTGGGCTTTG
* *
298223 AAAAGGGTGCCACAGAC-TTGTGGGCTTTG
1 AAAAGGTTGCCACTGACTTTGTGGGCTTTG
* * ** * *
298252 -AAAGGATACCGTTGAC-TTCTGAGCTTTG
1 AAAAGGTTGCCACTGACTTTGTGGGCTTTG
298280 AAATAGGTTGCCACTGACTTGTGTGGGCTTTG
1 AAA-AGGTTGCCACTGACTT-TGTGGGCTTTG
* **
298312 AAATGGGTTGCCACCAACTTGTGTGGGCTTT-
1 AAA-AGGTTGCCACTGACTT-TGTGGGCTTTG
* * * *
298343 AAAATGATGCCACTGATTTGTGTGGGATTTG
1 AAAAGGTTGCCACTGACTT-TGTGGGCTTTG
* * * *
298374 AGAACGATT-CCACTAAC-TTGTGAGCTTTG
1 A-AAAGGTTGCCACTGACTTTGTGGGCTTTG
* * **
298403 AAAAGGATGCCACTGAC-TTATGGAATTT-
1 AAAAGGTTGCCACTGACTTTGTGGGCTTTG
*
298431 AAAAGGATGCCACTGAC-TTGTGGGC-TT-
1 AAAAGGTTGCCACTGACTTTGTGGGCTTTG
298458 AAAATGGGTTGCCACTGACTTGTGTGGGCTTTG
1 AAAA--GGTTGCCACTGACTT-TGTGGGCTTTG
* * *
298491 AAATGGGTTGTCACTGACTTGTGTGGGCTTTC
1 AAA-AGGTTGCCACTGACTT-TGTGGGCTTTG
** *
298523 AAATTA-GTTGCCACCAACTCGTGTGGGCTTTG
1 AAA--AGGTTGCCACTGACT-TTGTGGGCTTTG
* * * *
298555 -AAATGATGCCATTGAC-TTGTGGGC-TTA
1 AAAAGGTTGCCACTGACTTTGTGGGCTTTG
* *
298582 AAAAGGGGTGCCACTGAC-TTATGGGCTTT-
1 AAAA-GGTTGCCACTGACTTTGTGGGCTTTG
* * * *
298611 AGAAGGGTGCCACTAAC-TTGTGGGC-TTA
1 AAAAGGTTGCCACTGACTTTGTGGGCTTTG
* ** *
298639 AAAAGGATGCCAC-GAAGTTGTGGACTTTG
1 AAAAGGTTGCCACTGACTTTGTGGGCTTTG
* * *
298668 -GAAGGGTGCCACTAAC-TTGTGGGCTT
1 AAAAGGTTGCCACTGACTTTGTGGGCTT
298694 AAAAAAGATG
Statistics
Matches: 606, Mismatches: 117, Indels: 82
0.75 0.15 0.10
Matches are distributed among these distances:
27 14 0.02
28 234 0.39
29 105 0.17
30 82 0.14
31 39 0.06
32 118 0.19
33 5 0.01
34 9 0.01
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.30
Consensus pattern (30 bp):
AAAAGGTTGCCACTGACTTTGTGGGCTTTG
Found at i:298008 original size:62 final size:62
Alignment explanation
Indices: 297924--298056 Score: 175
Period size: 62 Copynumber: 2.2 Consensus size: 62
297914 AACTTATGTG
*
297924 GGCTTTG--AAAAGAGTTGCCACCGACTTATATGGGCTTTAAAA-GAGTGACACTGACTTGTA
1 GGCTTTGAAAAAAGAGTTGCCACCGACTTATATGGGCATTAAAAGGA-TGACACTGACTTGTA
* * * * *
297984 GGCTTTGAAAAAAGAGTTGCCACCGACTTGTGTGGGCATTGAAAGGATGCCACTGACTTGTG
1 GGCTTTGAAAAAAGAGTTGCCACCGACTTATATGGGCATTAAAAGGATGACACTGACTTGTA
298046 GGCTTT-AAAAA
1 GGCTTTGAAAAA
298057 GGATGCCACT
Statistics
Matches: 64, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
60 7 0.11
61 5 0.08
62 50 0.78
63 2 0.03
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (62 bp):
GGCTTTGAAAAAAGAGTTGCCACCGACTTATATGGGCATTAAAAGGATGACACTGACTTGTA
Found at i:298193 original size:114 final size:114
Alignment explanation
Indices: 297907--298690 Score: 377
Period size: 114 Copynumber: 6.6 Consensus size: 114
297897 TCAAAAAAGG
* * ** * *
297907 TGCCACTAACTTATGTGGGCTTTGAAAAGAGTTGCCACCGACTTATATGGGCTTT-AAAAGAGTG
1 TGCCACTAACTTA--TGGGCTTTAAAAAG-GATGCCACTAAC-T-TGTGGGCTTTGAAAAGA-CG
* ** * * *
297971 ACACTGACTTGTAGGCTTTGAAAAAAGAGTTGCCACCGACTTGTGTGGGCATTGAAA-GGA
60 CCACTGACTTGT-GGGATTG--AAAAG-GGTGCCACAGAC-T-TGTGGGCTTTGAAAGGGA
* * * * * *
298031 TGCCACTGACTTGTGGGCTTTAAAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGATGTCATTG
1 TGCCACTAACTTATGGGCTTTAAAAAGGATGCCACTAACTTGTGGGCTTTGAAAAGACGCCACTG
* * *
298096 TCTTGTGGGCATTGAAAA-GGTGCCGCTGACTTGTGGGCTTTGAAAGGGTA
66 ACTTGTGGG-ATTGAAAAGGGTGCCACAGACTTGTGGGCTTTGAAAGGG-A
* * * * * *
298146 TGCCACTAATTTATGGGCTTT-GAAAGGGTGCCACTAACTTGTGGGCTTTGGAAGGGCGCCACTG
1 TGCCACTAACTTATGGGCTTTAAAAAGGATGCCACTAACTTGTGGGCTTTGAAAAGACGCCACTG
* *
298210 ACTTGTGGGTTTTAAAAGGGTGCCACAGACTTGTGGGCTTTGAAA-GGA
66 ACTTGTGGGATTGAAAAGGGTGCCACAGACTTGTGGGCTTTGAAAGGGA
* ** * * * * * * * **
298258 TACCGTTGACTTCTGAGCTTTGAAATAGGTTGCCACTGACTTGTGTGGGCTTTGAAATGGGTTGC
1 TGCCACTAACTTATGGGCTTT-AAAAAGGATGCCACTAAC-T-TGTGGGCTTTGAAA--AGACGC
** * * * * * * * *
298323 CACCAACTTGTGTGGGCTTTAAAATGATGCCACTGATTTGTGTGGGATTTGAGAA-CGA
61 CACTGAC-T-TGTGGGATTGAAAAGGGTGCCACAGA-CT-TGTGGGCTTTGA-AAGGGA
* * * * * * ** *
298381 TTCCACTAACTTGTGAGCTTTGAAAAGGATGCCACTGACTTATGGAATTT-AAAAGGATGCCACT
1 TGCCACTAACTTATGGGCTTTAAAAAGGATGCCACTAACTTGTGGGCTTTGAAAA-GACGCCACT
* * *
298445 GACTTGTGGGCTT-AAAATGGGTTGCCACTGACTTGTGTGGGCTTTGAAATGGGT
65 GACTTGTGGGATTGAAAA-GGG-TGCCACAGAC-T-TGTGGGCTTTGAAA-GGGA
* * * * * * * *
298499 TGTCACTGACTTGTGTGGGCTTTCAAATTA-GTTGCCACCAACTCGTGTGGGCTTTGAAATGATG
1 TGCCACTAAC-T-TATGGGCTTT-AAA-AAGGATGCCACTAACT--TGTGGGCTTTGAAAAGACG
* * * * *
298563 CCATTGACTTGTGGGCTTAAAAAGGGGTGCCACTGACTTATGGGCTTT-AGAAGGG-
60 CCACTGACTTGTGGGATTGAAAA-GGGTGCCACAGACTTGTGGGCTTTGA-AAGGGA
* * * * * * ** *
298618 TGCCACTAACTTGTGGGC-TTAAAAAGGATGCCACGAAGTTGTGGACTTTGGAAGGGTGCCACTA
1 TGCCACTAACTTATGGGCTTTAAAAAGGATGCCACTAACTTGTGGGCTTTGAAAAGACGCCACTG
298682 ACTTGTGGG
66 ACTTGTGGG
298691 CTTAAAAAAG
Statistics
Matches: 524, Mismatches: 104, Indels: 75
0.75 0.15 0.11
Matches are distributed among these distances:
112 15 0.03
113 49 0.09
114 84 0.16
115 46 0.09
116 27 0.05
117 34 0.06
118 29 0.06
119 36 0.07
120 49 0.09
121 35 0.07
122 41 0.08
123 58 0.11
124 21 0.04
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.30
Consensus pattern (114 bp):
TGCCACTAACTTATGGGCTTTAAAAAGGATGCCACTAACTTGTGGGCTTTGAAAAGACGCCACTG
ACTTGTGGGATTGAAAAGGGTGCCACAGACTTGTGGGCTTTGAAAGGGA
Found at i:298715 original size:28 final size:28
Alignment explanation
Indices: 298569--299104 Score: 219
Period size: 28 Copynumber: 19.4 Consensus size: 28
298559 GATGCCATTG
* *
298569 ACTTGTGGGCTTAAAAAGGGGTGCCACTG-
1 ACTTGTGGACTTAAAAA-GGATGCCAC-GA
* * * * * *
298598 ACTTATGGGCTTTAGAAGGGTGCCACTA
1 ACTTGTGGACTTAAAAAGGATGCCACGA
*
298626 ACTTGTGGGCTTAAAAAGGATGCCACGA
1 ACTTGTGGACTTAAAAAGGATGCCACGA
* *** * *
298654 AGTTGTGGACTTTGGAAGGGTGCCACTA
1 ACTTGTGGACTTAAAAAGGATGCCACGA
* *
298682 ACTTGTGGGCTTAAAAAAGATGCCACGA
1 ACTTGTGGACTTAAAAAGGATGCCACGA
* * * *
298710 ATTTGT-GAATTTAAAAGGATGCCACGG
1 ACTTGTGGACTTAAAAAGGATGCCACGA
* *
298737 AGTTGTAGACTT-AAAA-GAGTGCCACGA
1 ACTTGTGGACTTAAAAAGGA-TGCCACGA
* * * * *
298764 AGTTTTCGACTTAAAATGG-TGCCACAA
1 ACTTGTGGACTTAAAAAGGATGCCACGA
* * * * *
298791 AGTTATGGACTTTAAAAGAATGCCACGG
1 ACTTGTGGACTTAAAAAGGATGCCACGA
* * *
298819 AGTTGTGGACTTGAAATGGATGCCACGGA
1 ACTTGTGGACTTAAAAAGGATGCCAC-GA
* * * *
298848 A-TTGTGGAATT-AAAAGGGTACCACGG
1 ACTTGTGGACTTAAAAAGGATGCCACGA
* * *
298874 AGTTATAGACTTAAAAA-GATGCCAC-A
1 ACTTGTGGACTTAAAAAGGATGCCACGA
* * *
298900 GAGTTGTGGACTT-AAAAGGGTGCCA-TA
1 -ACTTGTGGACTTAAAAAGGATGCCACGA
*
298927 GA-GTGATGGACTTTAAAAAGG-TGCCAC-A
1 -ACTTG-TGGAC-TTAAAAAGGATGCCACGA
* ** * *
298955 GAGTTACGGACTT-TAAAGGGTGCCAC-A
1 -ACTTGTGGACTTAAAAAGGATGCCACGA
* ** ** *
298982 GAGTTGTGGA-TTTTAAAGGGCGCCACGG
1 -ACTTGTGGACTTAAAAAGGATGCCACGA
* * * * *
299010 AGTTATGGACTTTAAAAGGGTGCCACGG
1 ACTTGTGGACTTAAAAAGGATGCCACGA
* *
299038 AGTTGTGGACTTTAAAAGGATGCCAC-A
1 ACTTGTGGACTTAAAAAGGATGCCACGA
* **
299065 TAGTTGTGGACTT-AAAAGGATGCCATAA
1 -ACTTGTGGACTTAAAAAGGATGCCACGA
*
299093 AGTTGTGGACTT
1 ACTTGTGGACTT
299105 TGAAAAGAAA
Statistics
Matches: 405, Mismatches: 79, Indels: 48
0.76 0.15 0.09
Matches are distributed among these distances:
26 17 0.04
27 171 0.42
28 193 0.48
29 24 0.06
ACGTcount: A:0.31, C:0.15, G:0.29, T:0.25
Consensus pattern (28 bp):
ACTTGTGGACTTAAAAAGGATGCCACGA
Found at i:298733 original size:27 final size:28
Alignment explanation
Indices: 298639--299120 Score: 237
Period size: 27 Copynumber: 17.5 Consensus size: 28
298629 TGTGGGCTTA
*
298639 AAAAGGATGCCACGAAGTTGTGGACTTT
1 AAAAGGATGCCACGAAGTTGTGGAATTT
** * * * ** *
298667 GGAAGGGTGCCACTAACTTGTGGGCTTA
1 AAAAGGATGCCACGAAGTTGTGGAATTT
* *
298695 AAAAAGATGCCACGAATTTGT-GAATTT
1 AAAAGGATGCCACGAAGTTGTGGAATTT
* * *
298722 AAAAGGATGCCACGGAGTTGTAG-ACTT
1 AAAAGGATGCCACGAAGTTGTGGAATTT
* * *
298749 AAAA-GAGTGCCACGAAGTTTTCG-ACTT
1 AAAAGGA-TGCCACGAAGTTGTGGAATTT
* * *
298776 AAAATGG-TGCCACAAAGTTATGGACTTT
1 AAAA-GGATGCCACGAAGTTGTGGAATTT
* * * *
298804 AAAAGAATGCCACGGAGTTGTGGACTTG
1 AAAAGGATGCCACGAAGTTGTGGAATTT
*
298832 AAATGGATGCCACGGAA-TTGTGGAA-TT
1 AAAAGGATGCCAC-GAAGTTGTGGAATTT
* * * * * *
298859 AAAAGGGTACCACGGAGTTATAG-ACTT
1 AAAAGGATGCCACGAAGTTGTGGAATTT
* *
298886 AAAAAGATGCCAC-AGAGTTGTGG-ACTT
1 AAAAGGATGCCACGA-AGTTGTGGAATTT
* * *
298913 AAAAGGGTGCCA-TAGAG-TGATGGACTTT
1 AAAAGGATGCCACGA-AGTTG-TGGAATTT
** *
298941 AAAAAGG-TGCCAC-AGAGTTACGGACTTT
1 -AAAAGGATGCCACGA-AGTTGTGGAATTT
*
298969 -AAAGGGTGCCAC-AGAGTTGTGG-ATTT
1 AAAAGGATGCCACGA-AGTTGTGGAATTT
* ** * * *
298995 TAAAGGGCGCCACGGAGTTATGGACTTT
1 AAAAGGATGCCACGAAGTTGTGGAATTT
* * *
299023 AAAAGGGTGCCACGGAGTTGTGGACTTT
1 AAAAGGATGCCACGAAGTTGTGGAATTT
*
299051 AAAAGGATGCCAC-ATAGTTGTGG-ACTT
1 AAAAGGATGCCACGA-AGTTGTGGAATTT
** *
299078 AAAAGGATGCCATAAAGTTGTGGACTTT
1 AAAAGGATGCCACGAAGTTGTGGAATTT
*
299106 GAAAAGAAATGCCAC
1 -AAAAG-GATGCCAC
299121 TGAATTATGG
Statistics
Matches: 354, Mismatches: 75, Indels: 48
0.74 0.16 0.10
Matches are distributed among these distances:
26 15 0.04
27 171 0.48
28 147 0.42
29 15 0.04
30 6 0.02
ACGTcount: A:0.33, C:0.15, G:0.28, T:0.24
Consensus pattern (28 bp):
AAAAGGATGCCACGAAGTTGTGGAATTT
Found at i:298814 original size:82 final size:83
Alignment explanation
Indices: 298571--299135 Score: 441
Period size: 82 Copynumber: 6.8 Consensus size: 83
298561 TGCCATTGAC
* * * * * *
298571 TTGTGGGCTTAAAAAGGGGTGCCACTG-ACTTATGGGCTTTAGAAGGGTGCCACTA-ACTTGTGG
1 TTGTGGACTT-AAAA-GGGTGCCAC-GAAGTTATGGACTTTAAAAGGGTGCCAC-AGAGTTATGG
* *
298634 GCTTAAAAAGGATGCCAC-GAAG
62 ACTTTAAAAGGATGCCACAG-AG
** * * * * * * * * *
298656 TTGTGGACTTTGGAAGGGTGCCACTAACTTGTGGGCTTAAAAAAGATGCCAC-GAATT-TGTGAA
1 TTGTGGAC-TTAAAAGGGTGCCACGAAGTTATGGACTTTAAAAGGGTGCCACAGAGTTATG-GAC
*
298719 TTTAAAAGGATGCCACGGAG
64 TTTAAAAGGATGCCACAGAG
* * * * * *
298739 TTGTAGACTTAAAAGAGTGCCACGAAGTTTTCGAC-TTAAAATGGTGCCACAAAGTTATGGACTT
1 TTGTGGACTTAAAAGGGTGCCACGAAGTTATGGACTTTAAAAGGGTGCCACAGAGTTATGGACTT
* *
298803 TAAAAGAATGCCACGGAG
66 TAAAAGGATGCCACAGAG
* * * * * * *
298821 TTGTGGACTTGAAATGGATGCCACGGAA-TTGTGGA-ATTAAAAGGGTACCACGGAGTTATAGAC
1 TTGTGGACTT-AAAAGGGTGCCAC-GAAGTTATGGACTTTAAAAGGGTGCCACAGAGTTATGGAC
*
298884 -TTAAAAAGATGCCACAGAG
64 TTTAAAAGGATGCCACAGAG
* * * *
298903 TTGTGGACTTAAAAGGGTGCCA-TAGAGTGATGGACTTTAAAAAGGTGCCACAGAGTTACGGACT
1 TTGTGGACTTAAAAGGGTGCCACGA-AGTTATGGACTTTAAAAGGGTGCCACAGAGTTATGGACT
*
298967 TT-AAAGGGTGCCACAGAG
65 TTAAAAGGATGCCACAGAG
* * * * * *
298985 TTGTGGATTTTAAAGGGCGCCACGGAGTTATGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTT
1 TTGTGGACTTAAAAGGGTGCCACGAAGTTATGGACTTTAAAAGGGTGCCACAGAGTTATGGACTT
*
299050 TAAAAGGATGCCACATAG
66 TAAAAGGATGCCACAGAG
* ** * ** * *
299068 TTGTGGACTTAAAAGGATGCCATAAAGTTGTGGACTTTGAAAAGAAATGCCACTGAATTATGGAC
1 TTGTGGACTTAAAAGGGTGCCACGAAGTTATGGACTTT-AAAAG-GGTGCCACAGAGTTATGGAC
299133 TTT
64 TTT
299136 GAAGAGGTCA
Statistics
Matches: 381, Mismatches: 81, Indels: 36
0.77 0.16 0.07
Matches are distributed among these distances:
79 1 0.00
80 1 0.00
81 27 0.07
82 171 0.45
83 113 0.30
84 39 0.10
85 27 0.07
86 2 0.01
ACGTcount: A:0.32, C:0.15, G:0.28, T:0.26
Consensus pattern (83 bp):
TTGTGGACTTAAAAGGGTGCCACGAAGTTATGGACTTTAAAAGGGTGCCACAGAGTTATGGACTT
TAAAAGGATGCCACAGAG
Found at i:298830 original size:55 final size:53
Alignment explanation
Indices: 298571--299104 Score: 334
Period size: 55 Copynumber: 9.7 Consensus size: 53
298561 TGCCATTGAC
* * * * * * * *
298571 TTGTGGGCTTAAAAAGGGGTGCCACTGACTTATGGGCTTTAGAAGGGTGCCACTAAC
1 TTGTGGACTT-AAAA-GGGTGCCACGGAGTTGTGGAC-TTA-AAAGGTGCCACAAAG
* * * * * * *
298628 TTGTGGGCTTAAAAAGGATGCCACGAAGTTGTGGACTTTGGAAGGGTGCCACTAAC
1 TTGTGGACTT-AAAAGGGTGCCACGGAGTTGTGGAC-TT-AAAAGGTGCCACAAAG
* * * * * * * **
298684 TTGTGGGCTTAAAAAAGATGCCACGAATTTGTGAATTTAAAAGGATGCCACGGAG
1 TTGTGGACTT-AAAAGGGTGCCACGGAGTTGTGGACTTAAAAGG-TGCCACAAAG
* * * * *
298739 TTGTAGACTTAAAAGAGTGCCACGAAGTTTTCGACTTAAAATGGTGCCACAAAG
1 TTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA-GGTGCCACAAAG
* ** * *
298793 TTATGGACTTTAAAAGAATGCCACGGAGTTGTGGACTTGAAATGGATGCCACGGAA-
1 TTGTGGAC-TTAAAAGGGTGCCACGGAGTTGTGGACTT-AAAAGG-TGCCAC-AAAG
* * * * * *
298849 TTGTGGAATTAAAAGGGTACCACGGAGTTATAGACTTAAAAAGATGCCACAGAG
1 TTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTT-AAAAGGTGCCACAAAG
** *
298903 TTGTGGACTTAAAAGGGTGCCATAGAG-TGATGGACTTTAAAAAGGTGCCACAGAG
1 TTGTGGACTTAAAAGGGTGCCACGGAGTTG-TGGAC-TT-AAAAGGTGCCACAAAG
** * * * * * **
298958 TTACGGACTTTAAAGGGTGCCACAGAGTTGTGGATTTTAAAGGGCGCCACGGAG
1 TTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGA-CTTAAAAGGTGCCACAAAG
* *
299012 TTATGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGATGCCACATAG
1 TTGTGGAC-TTAAAAGGGTGCCACGGAGTTGTGGAC-TTAAAAGG-TGCCACAAAG
* ***
299068 TTGTGGACTTAAAAGGATGCCATAAAGTTGTGGACTT
1 TTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTT
299105 TGAAAAGAAA
Statistics
Matches: 386, Mismatches: 76, Indels: 33
0.78 0.15 0.07
Matches are distributed among these distances:
53 2 0.01
54 96 0.25
55 175 0.45
56 96 0.25
57 17 0.04
ACGTcount: A:0.31, C:0.15, G:0.29, T:0.25
Consensus pattern (53 bp):
TTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGTGCCACAAAG
Found at i:299103 original size:137 final size:134
Alignment explanation
Indices: 298613--299105 Score: 465
Period size: 137 Copynumber: 3.6 Consensus size: 134
298603 TGGGCTTTAG
* * * ** *
298613 AAGGGTGCCACTAACTTGTGGGCTTAAAAAGGATGCCACGAAGTTGTGGACTTTGGAAGGGTGCC
1 AAGGGTGCCACGAAGTTGTGGACTT-AAAAGGATGCCAC-AAGTTGTGGACTTTAAAAGGATGCC
* * * * * * * *
298678 ACTAACTTGTGGGCTTAAAAAAGATGCCACGAATTTGTGAATTTAAAAGGATGCCACGGAGTTGT
64 ACAAAGTTGTGGACTT-TAAAGGATGCCACGAA-TTGTGGATTTAAAAGGGTGCCACGGAGTTAT
298743 AGACTTAA
127 AGACTTAA
* * * * *
298751 AAGAGTGCCACGAAGTTTTCGACTTAAAATGG-TGCCACAAAGTTATGGACTTTAAAAGAATGCC
1 AAGGGTGCCACGAAGTTGTGGACTTAAAA-GGATGCCAC-AAGTTGTGGACTTTAAAAGGATGCC
** * * *
298815 ACGGAGTTGTGGACTTGAAATGGATGCCACGGAATTGTGGAATTAAAAGGGTACCACGGAGTTAT
64 ACAAAGTTGTGGACTTTAAA-GGATGCCAC-GAATTGTGGATTTAAAAGGGTGCCACGGAGTTAT
298880 AGACTTAA
127 AGACTTAA
* * * *
298888 AAAGATGCCAC-AGAGTTGTGGACTTAAAAGGGTGCCATAGAG-TGATGGACTTTAAAAAGG-TG
1 AAGGGTGCCACGA-AGTTGTGGACTTAAAAGGATGCCACA-AGTTG-TGGACTTT-AAAAGGATG
* ** * * * *
298950 CCACAGAGTTACGGACTTTAAAGGGTGCCACAGAGTTGTGGATTTTAAAGGGCGCCACGGAGTTA
62 CCACAAAGTTGTGGACTTTAAAGGATGCCAC-GAATTGTGGATTTAAAAGGGTGCCACGGAGTTA
*
299015 TGGACTTTAA
126 TAGAC-TTAA
*
299025 AAGGGTGCCACGGAGTTGTGGACTTTAAAAGGATGCCACATAGTTGTGGAC-TTAAAAGGATGCC
1 AAGGGTGCCACGAAGTTGTGGAC-TTAAAAGGATGCCACA-AGTTGTGGACTTTAAAAGGATGCC
*
299089 ATAAAGTTGTGGACTTT
64 ACAAAGTTGTGGACTTT
299106 GAAAAGAAAT
Statistics
Matches: 289, Mismatches: 53, Indels: 27
0.78 0.14 0.07
Matches are distributed among these distances:
136 54 0.19
137 183 0.63
138 50 0.17
139 2 0.01
ACGTcount: A:0.32, C:0.15, G:0.28, T:0.25
Consensus pattern (134 bp):
AAGGGTGCCACGAAGTTGTGGACTTAAAAGGATGCCACAAGTTGTGGACTTTAAAAGGATGCCAC
AAAGTTGTGGACTTTAAAGGATGCCACGAATTGTGGATTTAAAAGGGTGCCACGGAGTTATAGAC
TTAA
Done.