Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold41
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2798036
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.34
Warning! 10448 characters in sequence are not A, C, G, or T
File 13 of 21
Found at i:1393787 original size:33 final size:33
Alignment explanation
Indices: 1393745--1393814 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
1393735 TTCAACGATT
1393745 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
1393778 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
1393811 TGTA
1 TGTA
1393815 AGCTACTGCC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.34, C:0.11, G:0.14, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:1393873 original size:13 final size:13
Alignment explanation
Indices: 1393855--1393879 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1393845 ATTACTCACA
1393855 TGTATCGATACAT
1 TGTATCGATACAT
1393868 TGTATCGATACA
1 TGTATCGATACA
1393880 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1393944 original size:52 final size:52
Alignment explanation
Indices: 1393888--1394008 Score: 224
Period size: 52 Copynumber: 2.3 Consensus size: 52
1393878 CACTGATCTT
*
1393888 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
1393940 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
1393992 TGTATCGATACATGCAG
1 TGTATCGATACATGCAG
1394009 TAACTTTTCA
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:1402304 original size:31 final size:31
Alignment explanation
Indices: 1402266--1402410 Score: 190
Period size: 31 Copynumber: 4.7 Consensus size: 31
1402256 AAAAATAAAA
1402266 AAAGTCCACGACTCAGTGGCAATCTCTTCTC
1 AAAGTCCACGACTCAGTGGCAATCTCTTCTC
*
1402297 AAAGTCCACGACTCAGTGGCAATCTCTGCTC
1 AAAGTCCACGACTCAGTGGCAATCTCTTCTC
*
1402328 AAAGTCCACGACGCAGTGGC-ATC-CTTCTC
1 AAAGTCCACGACTCAGTGGCAATCTCTTCTC
*
1402357 TTTAAAGTCCACGACTCAGTGGC-AT-TTTGTCTC
1 ---AAAGTCCACGACTCAGTGGCAATCTCT-TCTC
*
1402390 AAAGTCCACGACTCTGTGGCA
1 AAAGTCCACGACTCAGTGGCA
1402411 CTTTTTTCAT
Statistics
Matches: 102, Mismatches: 6, Indels: 12
0.85 0.05 0.10
Matches are distributed among these distances:
29 5 0.05
30 22 0.22
31 49 0.48
32 22 0.22
33 4 0.04
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (31 bp):
AAAGTCCACGACTCAGTGGCAATCTCTTCTC
Found at i:1402443 original size:34 final size:33
Alignment explanation
Indices: 1402352--1402515 Score: 138
Period size: 33 Copynumber: 4.9 Consensus size: 33
1402342 AGTGGCATCC
* * *
1402352 TTCTCTTTAAAGTCCACGACTCAGTGGCA-TTTT
1 TTCT-TTTAAAGCCCACAACTCCGTGGCACTTTT
* * * * *
1402385 GTC--TCAAAGTCCACGACTCTGTGGCACTTTT
1 TTCTTTTAAAGCCCACAACTCCGTGGCACTTTT
*
1402416 TTCATCTTT-AAGTCCACAACTCCGTGGCACTCTTTT
1 TTC-T-TTTAAAGCCCACAACTCCGTGGCA--CTTTT
*
1402452 TTCCTTTTCAAAGCCCACAACTCCGTGGCACCTTT
1 TT-CTTTT-AAAGCCCACAACTCCGTGGCACTTTT
*
1402487 TTCTTTTAAAGCCCACAACTCTGTGGCAC
1 TTCTTTTAAAGCCCACAACTCCGTGGCAC
1402516 CTACAACTTT
Statistics
Matches: 111, Mismatches: 10, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
30 21 0.19
31 6 0.05
33 23 0.21
34 23 0.21
35 10 0.09
36 8 0.07
37 20 0.18
ACGTcount: A:0.21, C:0.30, G:0.14, T:0.35
Consensus pattern (33 bp):
TTCTTTTAAAGCCCACAACTCCGTGGCACTTTT
Found at i:1402577 original size:87 final size:88
Alignment explanation
Indices: 1402439--1402603 Score: 287
Period size: 87 Copynumber: 1.9 Consensus size: 88
1402429 CCACAACTCC
* *
1402439 GTGGCACTCTTTTTTCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCT-TTTAAAGCCCAC
1 GTGGCACTCTCTTTCCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTGTTTAAAGCCCAC
*
1402503 AACTCTGTGGCACCTACAACTTT
66 AACTCCGTGGCACCTACAACTTT
*
1402526 GTGGCACTCTCTTTCCCTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCTGTTTAAAGCCCAC
1 GTGGCACTCTCTTTCCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTGTTTAAAGCCCAC
1402591 AACTCCGTGGCAC
66 AACTCCGTGGCAC
1402604 TCTTTTTCCC
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
87 49 0.67
88 24 0.33
ACGTcount: A:0.20, C:0.33, G:0.14, T:0.33
Consensus pattern (88 bp):
GTGGCACTCTCTTTCCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTGTTTAAAGCCCAC
AACTCCGTGGCACCTACAACTTT
Found at i:1402588 original size:34 final size:33
Alignment explanation
Indices: 1402544--1403202 Score: 675
Period size: 34 Copynumber: 20.0 Consensus size: 33
1402534 CTCTTTCCCT
*
1402544 TTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTCTTC
*
1402577 TGTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 T-TTTAAAGCCCACAACTCCGTGGCAC-CTTCTT--C
* *
1402614 TTTTTCAAAGCCCACAACTCCGTGGCACTTTTTTC
1 -TTTT-AAAGCCCACAACTCCGTGGCACCTTCTTC
*
1402649 TTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTTAAAGCCCACAACTCCGTGGCAC-CTTCTT--C
* *
1402685 TTTT-AAGTCTACAACTCCGTGGCACCTTCTTC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTCTTC
1402717 TTTTCAAAGCCCACAACTCCGTGGCACCTTCTTC
1 TTTT-AAAGCCCACAACTCCGTGGCACCTTCTTC
* *
1402751 ATTTCAAAGCCCACGACTCCGTGGCA-C-TC-T-
1 -TTTTAAAGCCCACAACTCCGTGGCACCTTCTTC
1402781 TTTTAAAGCCCACAACTCCGTGGCACCTTCTTC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTCTTC
*
1402814 TTTTCAAAGCCCACAACTCTGTGGCA-C-TC-T-
1 TTTT-AAAGCCCACAACTCCGTGGCACCTTCTTC
* *
1402844 TTTTAAAGCCCACAACTCTGTGGCACTCTTTTTCC
1 TTTTAAAGCCCACAACTCCGTGGCAC-CTTCTT-C
* * * *
1402879 TTCT-AAGCCCACAACTCTGTGGCATTCTTTTTCC
1 TTTTAAAGCCCACAACTCCGTGGCA-CCTTCTT-C
* * *
1402913 GTTT-AAGTCCACAACGCCGTGGCACC--CTTC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTCTTC
*
1402943 ---CAAAGCCCACAACTCCGTGGCACCTTCTT-
1 TTTTAAAGCCCACAACTCCGTGGCACCTTCTTC
1402972 TTTTAAAGCCCACAACTCCGTGGCACCTTCTTC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTCTTC
1403005 TTTTCAAAGCCCACAACTCCGTGGCACCTTCTTC
1 TTTT-AAAGCCCACAACTCCGTGGCACCTTCTTC
* * *
1403039 ATTTCAAAGCCCACGACTCCGTGACA-C-TC-T-
1 -TTTTAAAGCCCACAACTCCGTGGCACCTTCTTC
1403069 TTTTAAAGCCCACAACTCCGTGGCACCTTCTTC
1 TTTTAAAGCCCACAACTCCGTGGCACCTTCTTC
1403102 TTTTCAAAGCCCACAACTCCGTGGCA-C-TC-T-
1 TTTT-AAAGCCCACAACTCCGTGGCACCTTCTTC
* *
1403132 TTTTAAAGCCCACAACTCTGTGGCACTCTTTTTC
1 TTTTAAAGCCCACAACTCCGTGGCAC-CTTCTTC
** * *
1403166 TTCCAAAGCCCACACAAGTCGGTGGCAACCTTCTTC
1 TTTTAAAG-CC-CACAACTCCGTGGC-ACCTTCTTC
1403202 T
1 T
1403203 AAAGCCCACA
Statistics
Matches: 541, Mismatches: 39, Indels: 89
0.81 0.06 0.13
Matches are distributed among these distances:
28 20 0.04
29 86 0.16
30 14 0.03
31 12 0.02
32 45 0.08
33 42 0.08
34 227 0.42
35 37 0.07
36 24 0.04
37 11 0.02
38 23 0.04
ACGTcount: A:0.21, C:0.35, G:0.13, T:0.31
Consensus pattern (33 bp):
TTTTAAAGCCCACAACTCCGTGGCACCTTCTTC
Found at i:1402802 original size:63 final size:64
Alignment explanation
Indices: 1402548--1403202 Score: 612
Period size: 63 Copynumber: 10.0 Consensus size: 64
1402538 TTCCCTTTTT
* *
1402548 AAAGCCCACAACTCCGTGGCACCTTTTTCTGTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCC
1 AAAGCCCACAACTCCGTGGCACC---TTCTTTTTAAAGCCCACAACTCCGTGGCAC-CTTCTT--
1402613 CTTTTTC
60 C--TTTC
* * *
1402620 AAAGCCCACAACTCCGTGGCACTTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 AAAGCCCACAACTCCGTGGCAC-CTTCT-TTTTAAAGCCCACAACTCCGTGGCAC-CTTCTT--C
1402685 TTT-
61 TTTC
* * *
1402688 TAAGTCTACAACTCCGTGGCACCTTCTTCTTTTCAAAGCCCACAACTCCGTGGCACCTTCTTCAT
1 AAAGCCCACAACTCCGTGGCACCTTC-T-TTTT-AAAGCCCACAACTCCGTGGCACCTTCTTC-T
1402753 TTC
62 TTC
*
1402756 AAAGCCCACGACTCCGTGGCA-C-TCTTTTTAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTC
1 AAAGCCCACAACTCCGTGGCACCTTCTTTTTAAAGCCCACAACTCCGTGGCACCTTCTTC-TTTC
* * * *
1402819 AAAGCCCACAACTCTGTGGCA-C-TCTTTTTAAAGCCCACAACTCTGTGGCACTCTTTTTCCTTC
1 AAAGCCCACAACTCCGTGGCACCTTCTTTTTAAAGCCCACAACTCCGTGGCAC-CTTCTTCTTTC
* * * * * *
1402882 TAAGCCCACAACTCTGTGGCATTCTT-TTTCCGTTTAAGTCCACAACGCCGTGGCACC--CTTC-
1 AAAGCCCACAACTCCGTGGCA-CCTTCTTT---TTAAAGCCCACAACTCCGTGGCACCTTCTTCT
1402943 --C
62 TTC
1402944 AAAGCCCACAACTCCGTGGCACCTTCTTTTTTAAAGCCCACAACTCCGTGGCACCTTCTTCTTTT
1 AAAGCCCACAACTCCGTGGCACCTTC-TTTTTAAAGCCCACAACTCCGTGGCACCTTCTTC-TTT
1403009 C
64 C
* *
1403010 AAAGCCCACAACTCCGTGGCACCTTCTTCATTTCAAAGCCCACGACTCCGTGACA-C-TCTT-TT
1 AAAGCCCACAACTCCGTGGCACCTTCTT--TTT-AAAGCCCACAACTCCGTGGCACCTTCTTCTT
1403072 T-
63 TC
1403073 AAAGCCCACAACTCCGTGGCACCTTCTTCTTTTCAAAGCCCACAACTCCGTGGCA-C-TCTT-TT
1 AAAGCCCACAACTCCGTGGCACCTTC-T-TTTT-AAAGCCCACAACTCCGTGGCACCTTCTTCTT
1403135 T-
63 TC
* * *
1403136 AAAGCCCACAACTCTGTGGCACTCTT-TTTCTTCCAAAGCCCACACAAGTCGGTGGCAACCTTCT
1 AAAGCCCACAACTCCGTGGCAC-CTTCTTT-TT--AAAG-CC-CACAACTCCGTGGC-ACCTTCT
1403200 TCT
59 TCT
1403203 AAAGCCCACA
Statistics
Matches: 510, Mismatches: 38, Indels: 73
0.82 0.06 0.12
Matches are distributed among these distances:
60 22 0.04
61 5 0.01
62 27 0.05
63 190 0.37
64 19 0.04
65 23 0.05
66 36 0.07
67 12 0.02
68 90 0.18
69 26 0.05
70 3 0.01
71 35 0.07
72 22 0.04
ACGTcount: A:0.21, C:0.35, G:0.13, T:0.30
Consensus pattern (64 bp):
AAAGCCCACAACTCCGTGGCACCTTCTTTTTAAAGCCCACAACTCCGTGGCACCTTCTTCTTTC
Found at i:1403031 original size:288 final size:292
Alignment explanation
Indices: 1402542--1403179 Score: 975
Period size: 288 Copynumber: 2.2 Consensus size: 292
1402532 CTCTCTTTCC
* *
1402542 CTTTTTAAAGCCCACAACTCCGTGGCAC-CTTTTTCTGTTTAAAGCCCACAACTCCGTGGCACTC
1 CTTTTTAAAGCCCACAACTCTGTGGCACTCTTTTTCT-TCT-AAGCCCACAACTCCGTGGCACTC
* * * **
1402606 TTTTTCCCTTTTTCAAAGCCCACAACTCCGTGGCACTTTTTTCTTTTAAAGCCCACAACTCCGTG
64 TTTTTCCCTGTTT-AAAGCCCACAACGCCGTGGCAC----TCCTTCCAAAGCCCACAACTCCGTG
* * *
1402671 GCACTCTTTTTCCCTTTTAAGTCTACAACTCCGTGGCACCTTCTTCTTTTCAAAGCCCACAACTC
124 GCACTCTTTTT--CTTTAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTCAAAGCCCACAACTC
*
1402736 CGTGGCACCTTCTTCATTTCAAAGCCCACGACTCCGTGGCACTCTTTTTAAAGCCCACAACTCCG
187 CGTGGCACCTTCTTCATTTCAAAGCCCACGACTCCGTGACACTCTTTTTAAAGCCCACAACTCCG
*
1402801 TGGCACCTTCTTCTTTTCAAAGCCCACAACTCTGTGGCACT
252 TGGCACCTTCTTCTTTTCAAAGCCCACAACTCCGTGGCACT
* *
1402842 CTTTTTAAAGCCCACAACTCTGTGGCACTCTTTTTCCTTCTAAGCCCACAACTCTGTGGCATTCT
1 CTTTTTAAAGCCCACAACTCTGTGGCACTCTTTTT-CTTCTAAGCCCACAACTCCGTGGCACTCT
*
1402907 TTTT-CC-GTTT-AAGTCCACAACGCCGTGGCAC-CCTTCCAAAGCCCACAACTCCGTGGCAC-C
65 TTTTCCCTGTTTAAAGCCCACAACGCCGTGGCACTCCTTCCAAAGCCCACAACTCCGTGGCACTC
1402967 TTCTTT-TTTAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTCAAAGCCCACAACTCCGTGGCA
130 TT-TTTCTTTAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTCAAAGCCCACAACTCCGTGGCA
1403031 CCTTCTTCATTTCAAAGCCCACGACTCCGTGACACTCTTTTTAAAGCCCACAACTCCGTGGCACC
194 CCTTCTTCATTTCAAAGCCCACGACTCCGTGACACTCTTTTTAAAGCCCACAACTCCGTGGCACC
1403096 TTCTTCTTTTCAAAGCCCACAACTCCGTGGCACT
259 TTCTTCTTTTCAAAGCCCACAACTCCGTGGCACT
*
1403130 CTTTTTAAAGCCCACAACTCTGTGGCACTCTTTTTCTTCCAAAGCCCACA
1 CTTTTTAAAGCCCACAACTCTGTGGCACTCTTTTTCTT-CTAAGCCCACA
1403180 CAAGTCGGTG
Statistics
Matches: 318, Mismatches: 16, Indels: 20
0.90 0.05 0.06
Matches are distributed among these distances:
287 3 0.01
288 197 0.62
290 3 0.01
291 28 0.09
296 19 0.06
298 3 0.01
299 2 0.01
300 53 0.17
301 8 0.03
302 2 0.01
ACGTcount: A:0.21, C:0.35, G:0.13, T:0.31
Consensus pattern (292 bp):
CTTTTTAAAGCCCACAACTCTGTGGCACTCTTTTTCTTCTAAGCCCACAACTCCGTGGCACTCTT
TTTCCCTGTTTAAAGCCCACAACGCCGTGGCACTCCTTCCAAAGCCCACAACTCCGTGGCACTCT
TTTTCTTTAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTCAAAGCCCACAACTCCGTGGCACC
TTCTTCATTTCAAAGCCCACGACTCCGTGACACTCTTTTTAAAGCCCACAACTCCGTGGCACCTT
CTTCTTTTCAAAGCCCACAACTCCGTGGCACT
Found at i:1403238 original size:65 final size:64
Alignment explanation
Indices: 1403165--1403305 Score: 250
Period size: 65 Copynumber: 2.2 Consensus size: 64
1403155 CACTCTTTTT
1403165 CTTCCAAAGCCCACACAAGTCGGTGGCAACC-TTCTTCTAAAGCCCACACAAGTCGGTGGCAACC
1 CTTCCAAAGCCCACACAAGTCGGTGGCAACCATTC-TCTAAAGCCCACACAAGTCGGTGGCAACC
1403229 CTTCTCAAAGCCCACACAAGTCGGTGGCAACCATTCTCTAAAGCCCACACAAGTCGGTGGCAACC
1 CTTC-CAAAGCCCACACAAGTCGGTGGCAACCATTCTCTAAAGCCCACACAAGTCGGTGGCAACC
1403294 CTTCC-AAGCCCA
1 CTTCCAAAGCCCA
1403306 ATATAGCTGG
Statistics
Matches: 75, Mismatches: 0, Indels: 5
0.94 0.00 0.06
Matches are distributed among these distances:
63 7 0.09
64 5 0.07
65 60 0.80
66 3 0.04
ACGTcount: A:0.28, C:0.37, G:0.18, T:0.17
Consensus pattern (64 bp):
CTTCCAAAGCCCACACAAGTCGGTGGCAACCATTCTCTAAAGCCCACACAAGTCGGTGGCAACC
Found at i:1403244 original size:32 final size:32
Alignment explanation
Indices: 1403165--1403305 Score: 218
Period size: 33 Copynumber: 4.4 Consensus size: 32
1403155 CACTCTTTTT
1403165 CTTC-CAAAGCCCACACAAGTCGGTGGCAA-C
1 CTTCTCAAAGCCCACACAAGTCGGTGGCAACC
1403195 CTTCTTCTAAAGCCCACACAAGTCGGTGGCAACC
1 CTTC-TC-AAAGCCCACACAAGTCGGTGGCAACC
1403229 CTTCTCAAAGCCCACACAAGTCGGTGGCAACC
1 CTTCTCAAAGCCCACACAAGTCGGTGGCAACC
*
1403261 ATTCTCTAAAGCCCACACAAGTCGGTGGCAACC
1 CTTCTC-AAAGCCCACACAAGTCGGTGGCAACC
1403294 CTTC-C-AAGCCCA
1 CTTCTCAAAGCCCA
1403306 ATATAGCTGG
Statistics
Matches: 104, Mismatches: 2, Indels: 10
0.90 0.02 0.09
Matches are distributed among these distances:
30 11 0.11
32 33 0.32
33 55 0.53
34 5 0.05
ACGTcount: A:0.28, C:0.37, G:0.18, T:0.17
Consensus pattern (32 bp):
CTTCTCAAAGCCCACACAAGTCGGTGGCAACC
Found at i:1403305 original size:288 final size:281
Alignment explanation
Indices: 1402542--1403277 Score: 809
Period size: 288 Copynumber: 2.5 Consensus size: 281
1402532 CTCTCTTTCC
* * * *
1402542 CTTTTTAAAGCCCACAACTCCGTGGCAC-CTTTTTCTGTTTAAAGCCCACAACTCCGTGGC-ACT
1 CTTTTTAAAGCCCACAACTCTGTGGCACTCTTTTTC-CTTCAAAGCCCACAACTCGGTGGCAAC-
* * ** * **
1402605 CTTTTTCCCTTTTTCAAAGCCCACAACTCCGTGGCACTTTTTTCTTTTAAAGCCCACAACTCCGT
64 CTTCTT-CC---GT-AAAGCCCACAAAGCCGTGGCAC-----CCTTCCAAAGCCCACAACTCCGT
* * * *
1402670 GGCACTCTTTTTCCCTTTTAAGTCTACAACTCCGTGGCACCTTCTTCTTTTCAAAGCCCACAACT
119 GGCAC-CTTCTT--C--TAAAGCCCACAACTCCGTGGCACC-TCTTC---TCAAAGCCCACAACT
*
1402735 CCGTGGCACCTTCTTCATTTCAAAGCCCACGACTCCGTGGCACTCTTTTTAAAGCCCACAACTCC
175 CCGTGGCACCTTCTTCATTTCAAAGCCCACGACTCCGTGACACTCTTTTTAAAGCCCACAACTCC
*
1402800 GTGGCACCTTCTTCTTTTCAAAGCCCACAACTCTGTGGCACT
240 GTGGCACCTTCTTCTTTTCAAAGCCCACAACTCCGTGGCACT
* * **
1402842 CTTTTTAAAGCCCACAACTCTGTGGCACTCTTTTTCCTTCTAAGCCCACAACTCTGTGGCATTCT
1 CTTTTTAAAGCCCACAACTCTGTGGCACTCTTTTTCCTTCAAAGCCCACAACTCGGTGGCAACCT
* * * *
1402907 TTTTCCGTTTAAGTCCACAACGCCGTGGCACCCTTCCAAAGCCCACAACTCCGTGGCACCTTCTT
66 TCTTCCG-TAAAGCCCACAAAGCCGTGGCACCCTTCCAAAGCCCACAACTCCGTGGCACCTTC--
*
1402972 TTTTAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTCAAAGCCCACAACTCCGTGGCACCTTCT
128 TTCTAAAGCCCACAACTCCGTGGCACC-TCTTC---TCAAAGCCCACAACTCCGTGGCACCTTCT
1403037 TCATTTCAAAGCCCACGACTCCGTGACACTCTTTTTAAAGCCCACAACTCCGTGGCACCTTCTTC
189 TCATTTCAAAGCCCACGACTCCGTGACACTCTTTTTAAAGCCCACAACTCCGTGGCACCTTCTTC
1403102 TTTTCAAAGCCCACAACTCCGTGGCACT
254 TTTTCAAAGCCCACAACTCCGTGGCACT
*
1403130 CTTTTTAAAGCCCACAACTCTGTGGCACTCTTTTT-CTTCCAAAGCCCACACAAGTCGGTGGCAA
1 CTTTTTAAAGCCCACAACTCTGTGGCACTCTTTTTCCTT-CAAAG-CC-CACAACTCGGTGGCAA
* * *
1403194 CCTTCTT-C-TAAAGCCCACACAAGTCGGTGGCAACCCTTCTCAAAGCCCACACAAGTCGGTGGC
63 CCTTCTTCCGTAAAGCCCACA-AAG-CCGTGGC-ACCCTTC-CAAAG-CC-CACAACTCCGTGGC
1403257 AACCATTC-TCTAAAGCCCACA
122 -ACC-TTCTTCTAAAGCCCACA
1403278 CAAGTCGGTG
Statistics
Matches: 386, Mismatches: 34, Indels: 40
0.84 0.07 0.09
Matches are distributed among these distances:
287 12 0.03
288 191 0.49
289 9 0.02
290 28 0.07
291 30 0.08
292 16 0.04
293 12 0.03
294 3 0.01
295 3 0.01
296 19 0.05
297 1 0.00
299 2 0.01
300 53 0.14
301 7 0.02
ACGTcount: A:0.22, C:0.35, G:0.13, T:0.29
Consensus pattern (281 bp):
CTTTTTAAAGCCCACAACTCTGTGGCACTCTTTTTCCTTCAAAGCCCACAACTCGGTGGCAACCT
TCTTCCGTAAAGCCCACAAAGCCGTGGCACCCTTCCAAAGCCCACAACTCCGTGGCACCTTCTTC
TAAAGCCCACAACTCCGTGGCACCTCTTCTCAAAGCCCACAACTCCGTGGCACCTTCTTCATTTC
AAAGCCCACGACTCCGTGACACTCTTTTTAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTCAA
AGCCCACAACTCCGTGGCACT
Found at i:1403360 original size:49 final size:49
Alignment explanation
Indices: 1403303--1403882 Score: 412
Period size: 49 Copynumber: 11.6 Consensus size: 49
1403293 CCTTCCAAGC
* * *
1403303 CCAATATAGCTGGCCCTGAATCAGCATATTGGCACATTCATCTTTAAGT
1 CCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCACCTTTAAGT
* * *
1403352 CCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCACCATTAAGC
1 CCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCACCTTTAAGT
*
1403401 CCAATATAGCTGGCCTTGAATCAGCACATTGG-----T-ACCTTTAAGT
1 CCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCACCTTTAAGT
* *
1403444 CCAATATAGCTGGCCTTGAATCAGCATATTGGCGCCTTTTCCATCTTTAAGT
1 CCAATATAGCTGGCCTTGAATCAGCATATTGGCACC--TT-CACCTTTAAGT
* * * *
1403496 CCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCATTAAGT
1 CCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCACCTTTAAGT
* * *
1403545 CCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGC
1 CCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCACCTTTAAGT
* * * * * * ** *
1403594 CCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCACTTTTGGCA
1 CCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCA-C-CTTTAAG-T
* * **** * * * * * * ** *
1403646 CCTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCATTAAGT
1 CC-AATATAGCTGGCC-TTGAATC-AG-CAT-A-TTGGCACCTT--CACC-T-----TTAAGT
* * *
1403709 CCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TCATCTTTAAGT
1 CCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCACCTTTAAGT
* *
1403757 CCAATGTAGCTGGCCTTGAATCAGCACATT-G-A----CACCTTTAAGT
1 CCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCACCTTTAAGT
* *
1403800 CCAATATAGCTGGCCTTAAATCAGCATATTGGCACCTTTTCCATCTTTAAGT
1 CCAATATAGCTGGCCTTGAATCAGCATATTGGCACC--TT-CACCTTTAAGT
* * *
1403852 TCAATGTAGCTGGCCTTGAATCAGCACATTG
1 CCAATATAGCTGGCCTTGAATCAGCATATTG
1403883 ACATCTTTTT
Statistics
Matches: 417, Mismatches: 79, Indels: 67
0.74 0.14 0.12
Matches are distributed among these distances:
43 76 0.18
44 2 0.00
45 1 0.00
46 1 0.00
47 1 0.00
48 36 0.09
49 161 0.39
50 3 0.01
51 5 0.01
52 80 0.19
53 7 0.02
54 7 0.02
56 3 0.01
57 6 0.01
58 8 0.02
59 3 0.01
60 2 0.00
61 4 0.01
62 6 0.01
63 2 0.00
64 3 0.01
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (49 bp):
CCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCACCTTTAAGT
Found at i:1403472 original size:22 final size:22
Alignment explanation
Indices: 1403404--1403472 Score: 54
Period size: 22 Copynumber: 3.2 Consensus size: 22
1403394 ATTAAGCCCA
1403404 ATATAGCTGGCCTTGAATCAGC
1 ATATAGCTGGCCTTGAATCAGC
* * * * *
1403426 ACATTGGT-ACCTTTAAGTC--C
1 ATATAGCTGGCCTTGAA-TCAGC
1403446 AATATAGCTGGCCTTGAATCAGC
1 -ATATAGCTGGCCTTGAATCAGC
1403469 ATAT
1 ATAT
1403473 TGGCGCCTTT
Statistics
Matches: 32, Mismatches: 10, Indels: 10
0.62 0.19 0.19
Matches are distributed among these distances:
20 1 0.03
21 13 0.41
22 17 0.53
23 1 0.03
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (22 bp):
ATATAGCTGGCCTTGAATCAGC
Found at i:1403741 original size:115 final size:116
Alignment explanation
Indices: 1403524--1403742 Score: 296
Period size: 115 Copynumber: 1.9 Consensus size: 116
1403514 ACTCAGCACA
* * * *
1403524 TTGGCACCTTCACCATTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TTGGCACCTTCACCATTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCACCAT
* * *
1403589 TAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCACTT
66 TAAGCCCAATATAGCTGGCCGTGAATCAACACATTGGCATCTTTATCACTT
* * * *
1403640 TTGGCACC-TCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCAT
1 TTGGCACCTTCACCATTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCACCAT
* * * *
1403704 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
66 TAAGCCCAATATAGCTGGCCGTGAATCAACACATTGGCA
1403743 CCTCATCTTT
Statistics
Matches: 88, Mismatches: 15, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
115 80 0.91
116 8 0.09
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.31
Consensus pattern (116 bp):
TTGGCACCTTCACCATTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCACCAT
TAAGCCCAATATAGCTGGCCGTGAATCAACACATTGGCATCTTTATCACTT
Found at i:1403774 original size:48 final size:48
Alignment explanation
Indices: 1403640--1403882 Score: 334
Period size: 48 Copynumber: 5.1 Consensus size: 48
1403630 TTTATCACTT
*
1403640 TTGGCACCTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACA
1 TTGGCACCTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACA
* *
1403688 TTGGCACCTTCACCATTAAGTCCAATGTAGCTGGCCTTGAATCAGCACA
1 TTGGCACC-TCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACA
1403737 TTGGCACCTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACA
1 TTGGCACCTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACA
* * * *
1403785 TT-G-A---CACCTTTAAGTCCAATATAGCTGGCCTTAAATCAGCATA
1 TTGGCACCTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACA
*
1403828 TTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACA
1 TTGGCACC---T-CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACA
1403880 TTG
1 TTG
1403883 ACATCTTTTT
Statistics
Matches: 171, Mismatches: 14, Indels: 16
0.85 0.07 0.08
Matches are distributed among these distances:
43 37 0.22
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 48 0.28
49 45 0.26
52 37 0.22
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (48 bp):
TTGGCACCTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACA
Found at i:1403810 original size:43 final size:43
Alignment explanation
Indices: 1403698--1403890 Score: 188
Period size: 43 Copynumber: 4.2 Consensus size: 43
1403688 TTGGCACCTT
*
1403698 CACCATTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
1 CACCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATT-G-A
*
1403743 CCTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGA
1 ---CACCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGA
* * *
1403789 CACCTTTAAGTCCAATATAGCTGGCCTTAAATCAGCATATTGGCA
1 CACCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATT-G-A
* *
1403834 CCTTTTCCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGA
1 -------CACCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGA
*
1403884 CATCTTT
1 CACCTTT
1403891 TTTCATCATC
Statistics
Matches: 125, Mismatches: 11, Indels: 23
0.79 0.07 0.14
Matches are distributed among these distances:
43 44 0.35
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 39 0.31
50 1 0.01
51 1 0.01
52 36 0.29
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (43 bp):
CACCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGA
Found at i:1403874 original size:52 final size:53
Alignment explanation
Indices: 1403792--1403951 Score: 169
Period size: 52 Copynumber: 3.0 Consensus size: 53
1403782 ACATTGACAC
*
1403792 CTTTAAGTCCAATATAGCTGGCCTTAAATCAGCATATTGGCACCTTTTC-CAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCACAT
* * * * *
1403844 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCTTTTTTCATCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-C-CTTTTCA-CAT
* * * * * *
1403900 CTTTAAGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCAC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTT-TCAC
1403952 TTTTCTCATC
Statistics
Matches: 86, Mismatches: 17, Indels: 8
0.77 0.15 0.07
Matches are distributed among these distances:
52 37 0.43
53 1 0.01
54 9 0.10
55 3 0.03
56 36 0.42
ACGTcount: A:0.27, C:0.24, G:0.14, T:0.36
Consensus pattern (53 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCACAT
Found at i:1403881 original size:95 final size:91
Alignment explanation
Indices: 1403698--1403890 Score: 296
Period size: 95 Copynumber: 2.1 Consensus size: 91
1403688 TTGGCACCTT
* * *
1403698 CACCATTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTTTAAGTCCAATG
1 CACCTTTAAGTCCAATATAGCTGGCCTTAAATCAGCACATTGGCACCTCATCTTTAAGTCCAATG
1403763 TAGCTGGCCTTGAATCAGCACATTGA
66 TAGCTGGCCTTGAATCAGCACATTGA
* *
1403789 CACCTTTAAGTCCAATATAGCTGGCCTTAAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTC
1 CACCTTTAAGTCCAATATAGCTGGCCTTAAATCAGCACATTGGCACC---T-CATCTTTAAGTCC
1403854 AATGTAGCTGGCCTTGAATCAGCACATTGA
62 AATGTAGCTGGCCTTGAATCAGCACATTGA
*
1403884 CATCTTT
1 CACCTTT
1403891 TTTCATCATC
Statistics
Matches: 92, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
91 43 0.47
94 1 0.01
95 48 0.52
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (91 bp):
CACCTTTAAGTCCAATATAGCTGGCCTTAAATCAGCACATTGGCACCTCATCTTTAAGTCCAATG
TAGCTGGCCTTGAATCAGCACATTGA
Found at i:1403922 original size:56 final size:54
Alignment explanation
Indices: 1403792--1403946 Score: 179
Period size: 56 Copynumber: 2.9 Consensus size: 54
1403782 ACATTGACAC
* *
1403792 CTTTAAGTCCAATATAGCTGGCCTTAAATCAGCATATTGGCA-C-CTTTTCCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTTTTTCCAT
* * * *
1403844 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCTTTTTTCATCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTTTTTC--CAT
* * * * *
1403900 CTTTAAGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTT
1403947 ATCACTTTTC
Statistics
Matches: 84, Mismatches: 15, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
52 37 0.44
53 1 0.01
54 5 0.06
56 41 0.49
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.36
Consensus pattern (54 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTTTTTCCAT
Found at i:1404840 original size:13 final size:13
Alignment explanation
Indices: 1404822--1404846 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1404812 CATAAAATGT
1404822 TGTATCGATACAA
1 TGTATCGATACAA
1404835 TGTATCGATACA
1 TGTATCGATACA
1404847 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1404844 original size:33 final size:33
Alignment explanation
Indices: 1404802--1404871 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
1404792 TTCAACGATT
1404802 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
1404835 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
1404868 TGTA
1 TGTA
1404872 AGCTACTGCC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.34, C:0.11, G:0.14, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:1404929 original size:13 final size:13
Alignment explanation
Indices: 1404911--1404935 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1404901 ATTACTCACA
1404911 TGTATCGATACAT
1 TGTATCGATACAT
1404924 TGTATCGATACA
1 TGTATCGATACA
1404936 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1405000 original size:52 final size:52
Alignment explanation
Indices: 1404944--1405064 Score: 224
Period size: 52 Copynumber: 2.3 Consensus size: 52
1404934 CACTGATCTT
*
1404944 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
1404996 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
1405048 TGTATCGATACATGCAG
1 TGTATCGATACATGCAG
1405065 TAACTTTTCA
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:1410372 original size:17 final size:17
Alignment explanation
Indices: 1410346--1410378 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
1410336 AGGGTTCAAT
1410346 AAGAAAATGATGGAAAG
1 AAGAAAATGATGGAAAG
*
1410363 AAGAAGATGATGGAAA
1 AAGAAAATGATGGAAA
1410379 AAATTTATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.58, C:0.00, G:0.30, T:0.12
Consensus pattern (17 bp):
AAGAAAATGATGGAAAG
Found at i:1412128 original size:57 final size:57
Alignment explanation
Indices: 1411954--1412389 Score: 396
Period size: 57 Copynumber: 7.7 Consensus size: 57
1411944 ACTCTTAAAT
* * * * * * *
1411954 CTTTGGCAATAGCGAGATAAAAATTTTGGACCTTAGCAAATGTTCAAGCTCTCAAG-
1 CTTTAGCAATGGCAAGATAATAATTTTGGACCTTAGCAAATGATCGAGTTCTCAAGC
* * * * * *
1412010 CTTTTGACAGTGGCAAGATAATAATTTTGG-CTTTAGCAAATGGTCGAATTTTCAAGC
1 CTTTAG-CAATGGCAAGATAATAATTTTGGACCTTAGCAAATGATCGAGTTCTCAAGC
* * * * ** *
1412067 CTTTAGTAGTGGTAAGATAATAATTTTAGACCTTAGCAAACAATCAAGTTCTCAAGC
1 CTTTAGCAATGGCAAGATAATAATTTTGGACCTTAGCAAATGATCGAGTTCTCAAGC
* * * * * * * * *
1412124 CTTTAGTAATGGCAAGAAAATAATTGTAGACTTTAGCGAATGATTGAGCTCTCAAGT
1 CTTTAGCAATGGCAAGATAATAATTTTGGACCTTAGCAAATGATCGAGTTCTCAAGC
* * * * *
1412181 CTTTGGCAATGGCAAGATGACAA-TTTGGACCTTAGCAAATGGTTGAGTT-TCAAGC
1 CTTTAGCAATGGCAAGATAATAATTTTGGACCTTAGCAAATGATCGAGTTCTCAAGC
* * * * * * *
1412236 CTTTGGTAGTGGCCAGATAATAATTTTGGATCTTATCAAATGATCGAGTTTTCAAGC
1 CTTTAGCAATGGCAAGATAATAATTTTGGACCTTAGCAAATGATCGAGTTCTCAAGC
* *
1412293 CTTTGAG-AATGGCAAGATAATATTTTTGGACCTTAGCAAATGATTGAGTTCTCAAGC
1 CTTT-AGCAATGGCAAGATAATAATTTTGGACCTTAGCAAATGATCGAGTTCTCAAGC
* * * *
1412350 TTTTAGCAATGGCAAGATAACAATTTTGAACTTTAGCAAA
1 CTTTAGCAATGGCAAGATAATAATTTTGGACCTTAGCAAA
1412390 AGGTCAAGGA
Statistics
Matches: 305, Mismatches: 68, Indels: 13
0.79 0.18 0.03
Matches are distributed among these distances:
55 23 0.08
56 89 0.29
57 192 0.63
58 1 0.00
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.32
Consensus pattern (57 bp):
CTTTAGCAATGGCAAGATAATAATTTTGGACCTTAGCAAATGATCGAGTTCTCAAGC
Found at i:1412293 original size:169 final size:171
Alignment explanation
Indices: 1411982--1412394 Score: 505
Period size: 169 Copynumber: 2.4 Consensus size: 171
1411972 AAAAATTTTG
* * * *
1411982 GACCTTAGCAAATG-TTCAAGCTCTCAAGCTTTTGACAGTGGCAAGATAATAATTTTGG-CTTTA
1 GACCTTAGCAAATGATT-GAGCTCTCAAGCTTTTGGCAATGGCAAGATAACAATTTTGGACTTTA
* *
1412045 GCAAATGGTCGAATTTTCAAGCCTTTAGTAGTGGTAAGATAATAATTTTAGACCTTAGCAAACAA
65 GCAAATGGTCGAAGTTTCAAGCCTTTAGTAGTGGCAAGATAATAATTTTAGACCTTAGCAAACAA
1412110 TCAAGTTCTCAAGCCTTT-AGTAATGGCAAGAAAATAATTGTA
130 TCAAGTTCTCAAGCCTTTGAG-AATGGCAAGAAAATAATTGTA
* * * *
1412152 GACTTTAGCGAATGATTGAGCTCTCAAG-TCTTTGGCAATGGCAAGATGACAA-TTTGGACCTTA
1 GACCTTAGCAAATGATTGAGCTCTCAAGCT-TTTGGCAATGGCAAGATAACAATTTTGGACTTTA
* * * * * * **
1412215 GCAAATGGTTG-AGTTTCAAGCCTTTGGTAGTGGCCAGATAATAATTTTGGATCTTATCAAATGA
65 GCAAATGGTCGAAGTTTCAAGCCTTTAGTAGTGGCAAGATAATAATTTTAGACCTTAGCAAACAA
* * * * * *
1412279 TCGAGTTTTCAAGCCTTTGAGAATGGCAAGATAATATTTTTG
130 TCAAGTTCTCAAGCCTTTGAGAATGGCAAGAAAATAATTGTA
* * *
1412321 GACCTTAGCAAATGATTGAGTTCTCAAGCTTTTAGCAATGGCAAGATAACAATTTTGAACTTTAG
1 GACCTTAGCAAATGATTGAGCTCTCAAGCTTTTGGCAATGGCAAGATAACAATTTTGGACTTTAG
*
1412386 CAAAAGGTC
66 CAAATGGTC
1412395 AAGGAATAAT
Statistics
Matches: 204, Mismatches: 33, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
169 128 0.63
170 74 0.36
171 2 0.01
ACGTcount: A:0.32, C:0.15, G:0.20, T:0.32
Consensus pattern (171 bp):
GACCTTAGCAAATGATTGAGCTCTCAAGCTTTTGGCAATGGCAAGATAACAATTTTGGACTTTAG
CAAATGGTCGAAGTTTCAAGCCTTTAGTAGTGGCAAGATAATAATTTTAGACCTTAGCAAACAAT
CAAGTTCTCAAGCCTTTGAGAATGGCAAGAAAATAATTGTA
Found at i:1412386 original size:226 final size:227
Alignment explanation
Indices: 1411953--1412374 Score: 555
Period size: 226 Copynumber: 1.9 Consensus size: 227
1411943 AACTCTTAAA
* *
1411953 TCTTTGGCAATAGCGAGATAAAAATTTTGGACCTTAGCAAATGTTCAAGCTCTCAAGCTTTTGAC
1 TCTTTGGCAATAGCAAGATAAAAATTTTGGACCTTAGCAAATGTTCAAGCTCTCAAGCCTTTGAC
* * * *
1412018 AGTGGCAAGATAATAATTTTGGCTTTAGCAAATGGTCGAATTTTCAAGCCTTTAGTAGTGGTAAG
66 AGTGGCAAGATAATAATTTTGGATTTAGCAAATGATCGAATTTTCAAGCCTTTAGTAATGGCAAG
* *
1412083 ATAATAATTTTAGACCTTAGCAAACAATCAAGTTCTCAAGCCTTTAGTAATGGCAAGAAAATAAT
131 ATAATAATTTTAGACCTTAGCAAACAATCAAGTTCTCAAGCCTTTAGCAATGGCAAGAAAACAAT
1412148 TGTAGACTTTAGCGAATGATTGAGCTCTCAAG
196 TGTAGACTTTAGCGAATGATTGAGCTCTCAAG
* * * * * *
1412180 TCTTTGGCAATGGCAAGATGACAA-TTTGGACCTTAGCAAATGGTT-GAG-TTTCAAGCCTTTGG
1 TCTTTGGCAATAGCAAGATAAAAATTTTGGACCTTAGCAAAT-GTTCAAGCTCTCAAGCCTTTGA
* * * *
1412242 TAGTGGCCAGATAATAATTTTGGATCTTATCAAATGATCGAGTTTTCAAGCCTTTGAG-AATGGC
65 CAGTGGCAAGATAATAATTTTGGAT-TTAGCAAATGATCGAATTTTCAAGCCTTT-AGTAATGGC
* * ** ** * *
1412306 AAGATAATATTTTTGGACCTTAGCAAATGATTGAGTTCTCAAGCTTTTAGCAATGGCAAGATAAC
128 AAGATAATAATTTTAGACCTTAGCAAACAATCAAGTTCTCAAGCCTTTAGCAATGGCAAGAAAAC
1412371 AATT
193 AATT
1412375 TTGAACTTTA
Statistics
Matches: 166, Mismatches: 26, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
225 33 0.20
226 108 0.65
227 25 0.15
ACGTcount: A:0.32, C:0.15, G:0.20, T:0.32
Consensus pattern (227 bp):
TCTTTGGCAATAGCAAGATAAAAATTTTGGACCTTAGCAAATGTTCAAGCTCTCAAGCCTTTGAC
AGTGGCAAGATAATAATTTTGGATTTAGCAAATGATCGAATTTTCAAGCCTTTAGTAATGGCAAG
ATAATAATTTTAGACCTTAGCAAACAATCAAGTTCTCAAGCCTTTAGCAATGGCAAGAAAACAAT
TGTAGACTTTAGCGAATGATTGAGCTCTCAAG
Found at i:1422997 original size:21 final size:22
Alignment explanation
Indices: 1422971--1423017 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 22
1422961 GATCTATTCA
*
1422971 TTTCTCCTTCTTCCTCC-TCCT
1 TTTCTCCTTCCTCCTCCTTCCT
*
1422992 TTTCTCCTTCCTCTTCCTTCCT
1 TTTCTCCTTCCTCCTCCTTCCT
1423014 TTTC
1 TTTC
1423018 CCAAATTCCT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 15 0.65
22 8 0.35
ACGTcount: A:0.00, C:0.45, G:0.00, T:0.55
Consensus pattern (22 bp):
TTTCTCCTTCCTCCTCCTTCCT
Found at i:1423269 original size:6 final size:6
Alignment explanation
Indices: 1423258--1423308 Score: 75
Period size: 6 Copynumber: 8.5 Consensus size: 6
1423248 TATGCTATTC
* * *
1423258 CCATTG CCATTG CCATTG CCATTG CCATTG CTATTG CTATTG CTATTG
1 CCATTG CCATTG CCATTG CCATTG CCATTG CCATTG CCATTG CCATTG
1423306 CCA
1 CCA
1423309 GTAGATGAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 43 1.00
ACGTcount: A:0.18, C:0.29, G:0.16, T:0.37
Consensus pattern (6 bp):
CCATTG
Found at i:1435692 original size:13 final size:13
Alignment explanation
Indices: 1435674--1435700 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1435664 ATCACTCTAA
1435674 ATTCGGGTCATTT
1 ATTCGGGTCATTT
1435687 ATTCGGGTCATTT
1 ATTCGGGTCATTT
1435700 A
1 A
1435701 AGAGCTTGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.19, C:0.15, G:0.22, T:0.44
Consensus pattern (13 bp):
ATTCGGGTCATTT
Found at i:1436050 original size:16 final size:16
Alignment explanation
Indices: 1436016--1436063 Score: 51
Period size: 16 Copynumber: 3.0 Consensus size: 16
1436006 TTGAATTTAC
* **
1436016 AATAATTCAAACTCAA
1 AATAAATCAAACTTGA
*
1436032 AATAAATGAAACTTGA
1 AATAAATCAAACTTGA
*
1436048 AATAAGTCAAACTTGA
1 AATAAATCAAACTTGA
1436064 GATGACTGAA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.54, C:0.12, G:0.08, T:0.25
Consensus pattern (16 bp):
AATAAATCAAACTTGA
Found at i:1436985 original size:2 final size:2
Alignment explanation
Indices: 1436978--1437009 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
1436968 CAACTCAATC
1436978 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1437010 TTCGATAATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1437569 original size:8 final size:8
Alignment explanation
Indices: 1437556--1437722 Score: 59
Period size: 8 Copynumber: 21.1 Consensus size: 8
1437546 ATAATATTAA
*
1437556 ATATAATT
1 ATATAAAT
1437564 ATATAAAT
1 ATATAAAT
*
1437572 ATA-ATAT
1 ATATAAAT
*
1437579 A-AAAAAT
1 ATATAAAT
1437586 A-ATTAAA-
1 ATA-TAAAT
1437593 ATATAATATT
1 ATATAA-A-T
*
1437603 TTATAAAT
1 ATATAAAT
1437611 ATATAAATT
1 ATATAAA-T
*
1437620 ATTTAAAAT
1 ATAT-AAAT
*
1437629 TTATATAAT
1 ATATA-AAT
*
1437638 ATA-AATT
1 ATATAAAT
* **
1437645 ATTTATGT
1 ATATAAAT
*
1437653 ATTAAAAATT
1 A-TATAAA-T
1437663 ATATAAAT
1 ATATAAAT
1437671 ATA-AAAT
1 ATATAAAT
* *
1437678 ATTTTAA-
1 ATATAAAT
1437685 ATA-AAAT
1 ATATAAAT
1437692 -TAT-AAT
1 ATATAAAT
1437698 ATAATAAAT
1 AT-ATAAAT
1437707 ATATAAAT
1 ATATAAAT
1437715 ATA-AAAT
1 ATATAAAT
1437722 A
1 A
1437723 AATATATTAA
Statistics
Matches: 118, Mismatches: 23, Indels: 37
0.66 0.13 0.21
Matches are distributed among these distances:
6 8 0.07
7 31 0.26
8 44 0.37
9 25 0.21
10 10 0.08
ACGTcount: A:0.58, C:0.00, G:0.01, T:0.41
Consensus pattern (8 bp):
ATATAAAT
Found at i:1437580 original size:11 final size:12
Alignment explanation
Indices: 1437546--1437601 Score: 69
Period size: 12 Copynumber: 4.6 Consensus size: 12
1437536 AATAAACTTG
*
1437546 ATAATATTAAAT
1 ATAATATAAAAT
1437558 ATAATTATATAAAT
1 ATAA-TATA-AAAT
*
1437572 ATAATATAAAAA
1 ATAATATAAAAT
1437584 ATAAT-TAAAAT
1 ATAATATAAAAT
1437595 ATAATAT
1 ATAATAT
1437602 TTTATAAATA
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
11 10 0.26
12 13 0.34
13 7 0.18
14 8 0.21
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (12 bp):
ATAATATAAAAT
Found at i:1437648 original size:18 final size:18
Alignment explanation
Indices: 1437627--1437703 Score: 60
Period size: 18 Copynumber: 4.7 Consensus size: 18
1437617 ATTATTTAAA
1437627 ATTTATATAATATAAATT
1 ATTTATATAATATAAATT
* * *
1437645 ATTTATGTATTAAAAATT
1 ATTTATATAATATAAATT
*
1437663 A--TATA-AATATAAAAT
1 ATTTATATAATATAAATT
1437678 ATTT-TA-AATA-AAATT
1 ATTTATATAATATAAATT
*
1437693 A-TAATATAATA
1 ATTTATATAATA
1437704 AATATATAAA
Statistics
Matches: 46, Mismatches: 9, Indels: 10
0.71 0.14 0.15
Matches are distributed among these distances:
14 1 0.02
15 15 0.33
16 13 0.28
17 1 0.02
18 16 0.35
ACGTcount: A:0.55, C:0.00, G:0.01, T:0.44
Consensus pattern (18 bp):
ATTTATATAATATAAATT
Found at i:1437676 original size:16 final size:16
Alignment explanation
Indices: 1437591--1437721 Score: 61
Period size: 14 Copynumber: 8.7 Consensus size: 16
1437581 AAAATAATTA
* *
1437591 AAATATAATATTTTAT
1 AAATATAAAATTATAT
1437607 AAATATATAAATTAT-T
1 AAATATA-AAATTATAT
*
1437623 ---TA-AAATTTATAT
1 AAATATAAAATTATAT
*
1437635 -AATAT-AAATTATTT
1 AAATATAAAATTATAT
**
1437649 ATGTATTAAAAATTATAT
1 AAATA-T-AAAATTATAT
*
1437667 AAATATAAAA-TATTT
1 AAATATAAAATTATAT
*
1437682 TAA-ATAAAA-T-TAT
1 AAATATAAAATTATAT
*
1437695 -AATATAATAAATATAT
1 AAATATAA-AATTATAT
1437711 AAATATAAAAT
1 AAATATAAAAT
1437722 AAATATATTA
Statistics
Matches: 87, Mismatches: 14, Indels: 28
0.67 0.11 0.22
Matches are distributed among these distances:
11 6 0.07
12 4 0.05
13 8 0.09
14 18 0.21
15 9 0.10
16 18 0.21
17 13 0.15
18 11 0.13
ACGTcount: A:0.56, C:0.00, G:0.01, T:0.43
Consensus pattern (16 bp):
AAATATAAAATTATAT
Found at i:1437717 original size:17 final size:18
Alignment explanation
Indices: 1437682--1437729 Score: 57
Period size: 19 Copynumber: 2.7 Consensus size: 18
1437672 TAAAATATTT
1437682 TAAATAAA-AT-TATAATA
1 TAAATAAATATATA-AATA
1437699 T-AATAAATATATAAATA
1 TAAATAAATATATAAATA
1437716 TAAAATAAATATAT
1 T-AAATAAATATAT
1437730 TAATTATCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
16 6 0.22
17 8 0.30
18 2 0.07
19 11 0.41
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (18 bp):
TAAATAAATATATAAATA
Found at i:1437717 original size:22 final size:22
Alignment explanation
Indices: 1437662--1437729 Score: 56
Period size: 20 Copynumber: 3.2 Consensus size: 22
1437652 TATTAAAAAT
**
1437662 TATATAAATATAAAATATTTTAAA
1 TATATAAATAT--AATATAATAAA
*
1437686 TA-A-AATTATAATATAATAAA
1 TATATAAATATAATATAATAAA
1437706 TATATAAATAT-A-A-AATAAA
1 TATATAAATATAATATAATAAA
1437725 TATAT
1 TATAT
1437730 TAATTATCAA
Statistics
Matches: 38, Mismatches: 4, Indels: 9
0.75 0.08 0.18
Matches are distributed among these distances:
19 11 0.29
20 12 0.32
21 2 0.05
22 10 0.26
23 1 0.03
24 2 0.05
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (22 bp):
TATATAAATATAATATAATAAA
Found at i:1438997 original size:2 final size:2
Alignment explanation
Indices: 1438990--1439017 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
1438980 GCACATTAAC
1438990 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1439018 TTAATATGCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1440917 original size:16 final size:16
Alignment explanation
Indices: 1440898--1440955 Score: 59
Period size: 16 Copynumber: 3.7 Consensus size: 16
1440888 TAAAAATAAC
1440898 ATAATATATAATTAAT
1 ATAATATATAATTAAT
* *
1440914 ATAATATAAAAATAAT
1 ATAATATATAATTAAT
1440930 -T-ATAATATAATATAAT
1 ATAAT-ATATAAT-TAAT
1440946 ATAA-ATATAA
1 ATAATATATAA
1440956 AATATTTTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
14 2 0.06
15 6 0.18
16 24 0.71
17 1 0.03
18 1 0.03
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
ATAATATATAATTAAT
Found at i:1440918 original size:5 final size:5
Alignment explanation
Indices: 1440903--1441003 Score: 75
Period size: 5 Copynumber: 20.0 Consensus size: 5
1440893 ATAACATAAT
*
1440903 ATATA AT-TA ATATA ATATAA AAATA ATTATA ATATA ATATA ATATAA
1 ATATA ATATA ATATA ATAT-A ATATA A-TATA ATATA ATATA ATAT-A
* * * * *
1440950 ATATA AAATA TTTTA TATATA ATTATA ATAT- -TATA A-ATT TTATA ATATA
1 ATATA ATATA ATATA -ATATA A-TATA ATATA ATATA ATATA ATATA ATATA
1440999 ATATA
1 ATATA
1441004 CGAATTATTT
Statistics
Matches: 75, Mismatches: 12, Indels: 18
0.71 0.11 0.17
Matches are distributed among these distances:
3 3 0.04
4 6 0.08
5 45 0.60
6 21 0.28
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (5 bp):
ATATA
Found at i:1440928 original size:27 final size:27
Alignment explanation
Indices: 1440898--1440977 Score: 92
Period size: 27 Copynumber: 2.9 Consensus size: 27
1440888 TAAAAATAAC
1440898 ATAATATATAATTAATATAATATAAAA
1 ATAATATATAATTAATATAATATAAAA
*
1440925 ATAAT-TATAATATAATATAATATAAAT
1 ATAATATATAAT-TAATATAATATAAAA
* *
1440952 ATAAAATAT-TTTATATATAATTATAA
1 ATAATATATAATTA-ATATAA-TATAA
1440978 TATTATAAAT
Statistics
Matches: 46, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
26 8 0.17
27 30 0.65
28 8 0.17
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (27 bp):
ATAATATATAATTAATATAATATAAAA
Found at i:1440938 original size:22 final size:22
Alignment explanation
Indices: 1440910--1441003 Score: 74
Period size: 22 Copynumber: 4.5 Consensus size: 22
1440900 AATATATAAT
1440910 TAATATAATATAAAAATAATTA
1 TAATATAATATAAAAATAATTA
* *
1440932 TAATATAATAT-AATATAAATA
1 TAATATAATATAAAAATAATTA
* * * * *
1440953 TAAAATATTTTATATATAATTA
1 TAATATAATATAAAAATAATTA
*
1440975 TAATAT--TAT--AAAT-TTTA
1 TAATATAATATAAAAATAATTA
1440992 TAATATAATATA
1 TAATATAATATA
1441004 CGAATTATTT
Statistics
Matches: 57, Mismatches: 11, Indels: 10
0.73 0.14 0.13
Matches are distributed among these distances:
17 9 0.16
18 3 0.05
19 3 0.05
20 2 0.04
21 16 0.28
22 24 0.42
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (22 bp):
TAATATAATATAAAAATAATTA
Found at i:1440953 original size:38 final size:35
Alignment explanation
Indices: 1440869--1440957 Score: 91
Period size: 32 Copynumber: 2.7 Consensus size: 35
1440859 CAAATATTTA
*
1440869 ATAATATTAAATACAATTATAAAAATAACATAATAT
1 ATAATA-TAAATATAATTATAAAAATAACATAATAT
*
1440905 ATAAT-T-AATATAA-TATAAAAAT-A-ATTATAAT
1 ATAATATAAATATAATTATAAAAATAACATAAT-AT
*
1440936 ATAATAT-AATATAAATATAAAA
1 ATAATATAAATATAATTATAAAA
1440958 TATTTTATAT
Statistics
Matches: 48, Mismatches: 2, Indels: 9
0.81 0.03 0.15
Matches are distributed among these distances:
30 4 0.08
31 8 0.17
32 17 0.35
33 13 0.27
34 1 0.02
36 5 0.10
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (35 bp):
ATAATATAAATATAATTATAAAAATAACATAATAT
Found at i:1441003 original size:27 final size:28
Alignment explanation
Indices: 1440910--1441003 Score: 97
Period size: 27 Copynumber: 3.4 Consensus size: 28
1440900 AATATATAAT
* * **
1440910 TAATATAATATAAAAAT-AATTATAATA
1 TAATATAATATAAATATAAAATATTTTA
1440937 TAATATAATATAAATATAAAATATTTTA
1 TAATATAATATAAATATAAAATATTTTA
*
1440965 T-ATATAAT-TATAATATTATAA-ATTTTA
1 TAATATAATATA-AATA-TAAAATATTTTA
1440992 TAATATAATATA
1 TAATATAATATA
1441004 CGAATTATTT
Statistics
Matches: 57, Mismatches: 5, Indels: 8
0.81 0.07 0.11
Matches are distributed among these distances:
26 2 0.04
27 34 0.60
28 19 0.33
29 2 0.04
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (28 bp):
TAATATAATATAAATATAAAATATTTTA
Found at i:1443034 original size:9 final size:9
Alignment explanation
Indices: 1443022--1443081 Score: 56
Period size: 9 Copynumber: 7.0 Consensus size: 9
1443012 AATTAATACG
1443022 ATATATTTA
1 ATATATTTA
1443031 ATATA-TT-
1 ATATATTTA
1443038 -TATATTTA
1 ATATATTTA
*
1443046 AAAT-TTTA
1 ATATATTTA
1443054 ATATATTTA
1 ATATATTTA
*
1443063 ATTATTTTTA
1 A-TATATTTA
*
1443073 TTATATTTA
1 ATATATTTA
1443082 TATTTATAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
6 4 0.10
7 2 0.05
8 9 0.22
9 19 0.46
10 7 0.17
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (9 bp):
ATATATTTA
Found at i:1443077 original size:19 final size:17
Alignment explanation
Indices: 1443037--1443081 Score: 54
Period size: 19 Copynumber: 2.5 Consensus size: 17
1443027 TTTAATATAT
1443037 TTATATTTAAAATTTTA
1 TTATATTTAAAATTTTA
* *
1443054 ATATATTTAATTATTTTTA
1 TTATATTTAA--AATTTTA
1443073 TTATATTTA
1 TTATATTTA
1443082 TATTTATAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
17 9 0.39
19 14 0.61
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (17 bp):
TTATATTTAAAATTTTA
Found at i:1443088 original size:15 final size:15
Alignment explanation
Indices: 1443023--1443088 Score: 57
Period size: 15 Copynumber: 4.6 Consensus size: 15
1443013 ATTAATACGA
*
1443023 TATATTTAATATATT
1 TATATTTATTATATT
**
1443038 TATATTTAAAAT-TT
1 TATATTTATTATATT
* *
1443052 TA-ATATATT-TAAT
1 TATATTTATTATATT
*
1443065 TATTTTTATTATATT
1 TATATTTATTATATT
1443080 TATATTTAT
1 TATATTTAT
1443089 AAAATTAATA
Statistics
Matches: 39, Mismatches: 9, Indels: 6
0.72 0.17 0.11
Matches are distributed among these distances:
12 1 0.03
13 7 0.18
14 9 0.23
15 22 0.56
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (15 bp):
TATATTTATTATATT
Found at i:1443108 original size:42 final size:42
Alignment explanation
Indices: 1443027--1443109 Score: 105
Period size: 42 Copynumber: 2.0 Consensus size: 42
1443017 ATACGATATA
* ***
1443027 TTTAATATATTTATATTTAAAATTTTAATATATTTAATTATT
1 TTTAATATATTTATATTTAAAATATTAATATAAAAAATTATT
*
1443069 TTTATTATATTTATATTTATAAA-ATTAATATAAAAAATTAT
1 TTTAATATATTTATATTTA-AAATATTAATATAAAAAATTAT
1443110 AAAATATAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
42 32 0.91
43 3 0.09
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (42 bp):
TTTAATATATTTATATTTAAAATATTAATATAAAAAATTATT
Found at i:1443131 original size:13 final size:12
Alignment explanation
Indices: 1443086--1443131 Score: 53
Period size: 10 Copynumber: 4.0 Consensus size: 12
1443076 TATTTATATT
1443086 TATAAAAT-TAA
1 TATAAAATATAA
*
1443097 TATAAAA-A-AT
1 TATAAAATATAA
1443107 TATAAAATATAA
1 TATAAAATATAA
1443119 TATAAATATATAA
1 TATAAA-ATATAA
1443132 ATCATAAAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
10 8 0.28
11 8 0.28
12 7 0.24
13 6 0.21
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (12 bp):
TATAAAATATAA
Found at i:1443751 original size:20 final size:19
Alignment explanation
Indices: 1443713--1443768 Score: 71
Period size: 20 Copynumber: 3.0 Consensus size: 19
1443703 ATCTTGCTTT
*
1443713 TTAAA-AAAAA-TTAAATA
1 TTAAAGAAAAATTTTAATA
*
1443730 TTAAATAAATAATTTTAATA
1 TTAAAGAAA-AATTTTAATA
1443750 TTAAAGAAAAATTTTAATA
1 TTAAAGAAAAATTTTAATA
1443769 AATATTTAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
17 5 0.15
18 3 0.09
19 12 0.35
20 14 0.41
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.38
Consensus pattern (19 bp):
TTAAAGAAAAATTTTAATA
Found at i:1444208 original size:17 final size:17
Alignment explanation
Indices: 1444164--1444215 Score: 70
Period size: 17 Copynumber: 3.1 Consensus size: 17
1444154 TTTCATTAAT
1444164 TCATATTTTAT-TTATA
1 TCATATTTTATATTATA
* *
1444180 TAATTATGTTATATTATA
1 TCA-TATTTTATATTATA
1444198 TCATATTTTATATTATA
1 TCATATTTTATATTATA
1444215 T
1 T
1444216 TATAATTATT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
16 2 0.07
17 21 0.70
18 7 0.23
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.60
Consensus pattern (17 bp):
TCATATTTTATATTATA
Found at i:1444228 original size:22 final size:21
Alignment explanation
Indices: 1444183--1444234 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 21
1444173 ATTTATATAA
1444183 TTATGTTATATTATATCATATT
1 TTAT-TTATATTATATCATATT
*
1444205 TTATATTATATTATAATTAT-TT
1 TTAT-TTATATTAT-ATCATATT
1444227 TTATTTAT
1 TTATTTAT
1444235 TTTCTTAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
21 4 0.15
22 19 0.70
23 4 0.15
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (21 bp):
TTATTTATATTATATCATATT
Found at i:1444663 original size:15 final size:16
Alignment explanation
Indices: 1444633--1444666 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
1444623 TCAACCTTTT
*
1444633 TTTATAAAAATAAATA
1 TTTAAAAAAATAAATA
1444649 TTTAAAAAAAT-AATA
1 TTTAAAAAAATAAATA
1444664 TTT
1 TTT
1444667 TCAACCTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TTTAAAAAAATAAATA
Found at i:1444706 original size:47 final size:44
Alignment explanation
Indices: 1444614--1444705 Score: 130
Period size: 44 Copynumber: 2.0 Consensus size: 44
1444604 CATGCAATAT
1444614 ATAATATTTTCAACCTTTTTTTATAAAAATAAATATTTAAAAAA
1 ATAATATTTTCAACCTTTTTTTATAAAAATAAATATTTAAAAAA
* *
1444658 ATAATATTTTCAACCTTTTCTTTGGTTAAAAATAAATAATTTTAAAAA
1 ATAATATTTTCAACCTTTT-TTT--ATAAAAATAAAT-ATTTAAAAAA
1444706 TTTTAAAATG
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
44 19 0.45
45 3 0.07
47 11 0.26
48 9 0.21
ACGTcount: A:0.47, C:0.08, G:0.02, T:0.43
Consensus pattern (44 bp):
ATAATATTTTCAACCTTTTTTTATAAAAATAAATATTTAAAAAA
Found at i:1445395 original size:30 final size:31
Alignment explanation
Indices: 1445331--1445401 Score: 87
Period size: 30 Copynumber: 2.4 Consensus size: 31
1445321 ATATTTTTAT
1445331 ATTT-TATTATATTATAATTATATTTAAAAA
1 ATTTATATTATATTATAATTATATTTAAAAA
*
1445361 ATTTATATTGATATATATAA-TATA-TT-AATA
1 ATTTATATT-ATAT-TATAATTATATTTAAAAA
1445391 ATTTATATTAT
1 ATTTATATTAT
1445402 CTAAATTTTA
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
29 2 0.05
30 16 0.43
31 6 0.16
32 8 0.22
33 5 0.14
ACGTcount: A:0.45, C:0.00, G:0.01, T:0.54
Consensus pattern (31 bp):
ATTTATATTATATTATAATTATATTTAAAAA
Found at i:1445429 original size:19 final size:20
Alignment explanation
Indices: 1445407--1445449 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
1445397 ATTATCTAAA
*
1445407 TTTTAAAATATTTATA-TAT
1 TTTTAAAATATTCATATTAT
**
1445426 TTTTATTATATTCATATTAT
1 TTTTAAAATATTCATATTAT
1445446 TTTT
1 TTTT
1445450 TATATTTATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 13 0.65
20 7 0.35
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (20 bp):
TTTTAAAATATTCATATTAT
Found at i:1445454 original size:18 final size:17
Alignment explanation
Indices: 1445422--1445460 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
1445412 AAATATTTAT
1445422 ATATTTTTATTATATTC
1 ATATTTTTATTATATTC
* *
1445439 ATATTATTTTTTATATTT
1 ATATT-TTTATTATATTC
1445457 ATAT
1 ATAT
1445461 CGTATTTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 5 0.26
18 14 0.74
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.67
Consensus pattern (17 bp):
ATATTTTTATTATATTC
Found at i:1445487 original size:21 final size:21
Alignment explanation
Indices: 1445454--1445494 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
1445444 ATTTTTTATA
*
1445454 TTTATATCGTATTTAAATTTT
1 TTTATATCATATTTAAATTTT
* *
1445475 TTTATATTATATTTATATTT
1 TTTATATCATATTTAAATTT
1445495 ATGTAATATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.66
Consensus pattern (21 bp):
TTTATATCATATTTAAATTTT
Found at i:1446547 original size:21 final size:23
Alignment explanation
Indices: 1446521--1446571 Score: 61
Period size: 21 Copynumber: 2.3 Consensus size: 23
1446511 TAAAAGTTAT
1446521 TAATAATAAAAAAATTTA-T-AA
1 TAATAATAAAAAAATTTATTAAA
** *
1446542 TAATAATTTAAAATTTTATTAAA
1 TAATAATAAAAAAATTTATTAAA
1446565 TAATAAT
1 TAATAAT
1446572 CACTTTCATC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 15 0.60
22 1 0.04
23 9 0.36
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (23 bp):
TAATAATAAAAAAATTTATTAAA
Found at i:1447930 original size:17 final size:17
Alignment explanation
Indices: 1447895--1447928 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
1447885 TAGTGGTAAA
1447895 TATTAAATTTTAAAATT
1 TATTAAATTTTAAAATT
*
1447912 TATT-AATTTTATAATT
1 TATTAAATTTTAAAATT
1447928 T
1 T
1447929 TAACTTTACT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
TATTAAATTTTAAAATT
Found at i:1448169 original size:20 final size:21
Alignment explanation
Indices: 1448135--1448181 Score: 78
Period size: 20 Copynumber: 2.3 Consensus size: 21
1448125 TTGAAAAATT
1448135 TGAATTAAGTAACATTTAATA
1 TGAATTAAGTAACATTTAATA
*
1448156 TTAATTAA-TAACATTTAATA
1 TGAATTAAGTAACATTTAATA
1448176 TGAATT
1 TGAATT
1448182 GAAATTTTTC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 17 0.71
21 7 0.29
ACGTcount: A:0.47, C:0.04, G:0.06, T:0.43
Consensus pattern (21 bp):
TGAATTAAGTAACATTTAATA
Found at i:1448379 original size:20 final size:20
Alignment explanation
Indices: 1448356--1448395 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
1448346 TATTATTTTT
1448356 ATATCATAATATTTAT-TAAA
1 ATATCAT-ATATTTATATAAA
*
1448376 ATATTATATATTTATATAAA
1 ATATCATATATTTATATAAA
1448396 TTTTAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (20 bp):
ATATCATATATTTATATAAA
Found at i:1448507 original size:23 final size:25
Alignment explanation
Indices: 1448479--1448524 Score: 69
Period size: 23 Copynumber: 1.9 Consensus size: 25
1448469 CATAATGTTA
*
1448479 TTTATATTATATT-TTA-ATTATTT
1 TTTATATCATATTATTACATTATTT
1448502 TTTATATCATATTATTACATTAT
1 TTTATATCATATTATTACATTAT
1448525 GTCTAATATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 12 0.60
24 3 0.15
25 5 0.25
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (25 bp):
TTTATATCATATTATTACATTATTT
Found at i:1449428 original size:15 final size:14
Alignment explanation
Indices: 1449388--1449431 Score: 52
Period size: 15 Copynumber: 3.0 Consensus size: 14
1449378 TTGAGTTAAT
1449388 TTAAATATAAAAAAA
1 TTAAATAT-AAAAAA
*
1449403 TTATATATAAAAAA
1 TTAAATATAAAAAA
*
1449417 TATAAATTTAAAAAA
1 T-TAAATATAAAAAA
1449432 GTTCAAAATC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
14 7 0.28
15 18 0.72
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (14 bp):
TTAAATATAAAAAA
Found at i:1450675 original size:27 final size:27
Alignment explanation
Indices: 1450637--1450695 Score: 118
Period size: 27 Copynumber: 2.2 Consensus size: 27
1450627 TTTTATTTAT
1450637 TATTAAAGTATGAGAATAAAATACATA
1 TATTAAAGTATGAGAATAAAATACATA
1450664 TATTAAAGTATGAGAATAAAATACATA
1 TATTAAAGTATGAGAATAAAATACATA
1450691 TATTA
1 TATTA
1450696 TGCTGAAATT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.54, C:0.03, G:0.10, T:0.32
Consensus pattern (27 bp):
TATTAAAGTATGAGAATAAAATACATA
Found at i:1451409 original size:16 final size:16
Alignment explanation
Indices: 1451388--1451433 Score: 56
Period size: 17 Copynumber: 2.8 Consensus size: 16
1451378 ATTAAACATA
* *
1451388 AAATAATTTGAATCTG
1 AAATAATTTAAATATG
1451404 AAATAAATTTAAATATG
1 AAAT-AATTTAAATATG
*
1451421 AAATAATCTAAAT
1 AAATAATTTAAAT
1451434 CCAAAAATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
16 12 0.46
17 14 0.54
ACGTcount: A:0.54, C:0.04, G:0.07, T:0.35
Consensus pattern (16 bp):
AAATAATTTAAATATG
Found at i:1451422 original size:17 final size:17
Alignment explanation
Indices: 1451374--1451426 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 17
1451364 CCGAATGCAA
* *
1451374 AAATATTAAACATAAAAT
1 AAAT-TTAAATATGAAAT
* *
1451392 -AATTTGAATCTGAAAT
1 AAATTTAAATATGAAAT
1451408 AAATTTAAATATGAAAT
1 AAATTTAAATATGAAAT
1451425 AA
1 AA
1451427 TCTAAATCCA
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
16 9 0.32
17 19 0.68
ACGTcount: A:0.58, C:0.04, G:0.06, T:0.32
Consensus pattern (17 bp):
AAATTTAAATATGAAAT
Found at i:1453011 original size:19 final size:19
Alignment explanation
Indices: 1452960--1453016 Score: 53
Period size: 19 Copynumber: 3.0 Consensus size: 19
1452950 ATTAAAATTG
*
1452960 TAAAATAATAATTGTAATAT
1 TAAAATAATAATTGTTAT-T
* * *
1452980 T-ATATTATGATTGTTATT
1 TAAAATAATAATTGTTATT
*
1452998 TAAAATAATAATTGCTATT
1 TAAAATAATAATTGTTATT
1453017 GTTTGATTCA
Statistics
Matches: 28, Mismatches: 8, Indels: 3
0.72 0.21 0.08
Matches are distributed among these distances:
18 2 0.07
19 25 0.89
20 1 0.04
ACGTcount: A:0.44, C:0.02, G:0.07, T:0.47
Consensus pattern (19 bp):
TAAAATAATAATTGTTATT
Found at i:1453324 original size:2 final size:2
Alignment explanation
Indices: 1453317--1453346 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
1453307 ATGGTGTTTG
1453317 AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1453347 AATGAATAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1456108 original size:19 final size:19
Alignment explanation
Indices: 1456062--1456112 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
1456052 ATTATTGTAC
*
1456062 AATAAATATGTAATAAATT
1 AATAAATATATAATAAATT
* *
1456081 -ATATTATATATAATAACTT
1 AATA-AATATATAATAAATT
1456100 AATAAATATATAA
1 AATAAATATATAA
1456113 AATTTATTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
18 3 0.12
19 20 0.77
20 3 0.12
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (19 bp):
AATAAATATATAATAAATT
Found at i:1456129 original size:36 final size:36
Alignment explanation
Indices: 1456062--1456173 Score: 120
Period size: 36 Copynumber: 3.1 Consensus size: 36
1456052 ATTATTGTAC
*
1456062 AATAAATATGTAATAAATTATATTA-TATATAATAA-CTT
1 AATAAATATAT-A-AAATT-TATTATTATATAATAATC-T
*
1456100 AATAAATATATAAAATTTATTATTGTATAATAATCT
1 AATAAATATATAAAATTTATTATTATATAATAATCT
* * * *
1456136 AATAAACAAATAGATTTTATTATTATATAATAATCT
1 AATAAATATATAAAATTTATTATTATATAATAATCT
1456172 AA
1 AA
1456174 ATTAATTAAA
Statistics
Matches: 65, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
35 5 0.08
36 48 0.74
37 2 0.03
38 10 0.15
ACGTcount: A:0.52, C:0.04, G:0.03, T:0.42
Consensus pattern (36 bp):
AATAAATATATAAAATTTATTATTATATAATAATCT
Found at i:1456286 original size:17 final size:18
Alignment explanation
Indices: 1456263--1456315 Score: 63
Period size: 17 Copynumber: 2.8 Consensus size: 18
1456253 TAAGATATAA
1456263 ATATAATTTTTAATTATT
1 ATATAATTTTTAATTATT
*
1456281 -TATAATTTTATAAATATT
1 ATATAATTTT-TAATTATT
1456299 ATATATATTTTTTAATT
1 ATATA-A-TTTTTAATT
1456316 TGATATTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
17 9 0.31
18 7 0.24
19 4 0.14
20 5 0.17
21 4 0.14
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (18 bp):
ATATAATTTTTAATTATT
Found at i:1457237 original size:2 final size:2
Alignment explanation
Indices: 1457230--1457257 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
1457220 TCATTAGTTA
1457230 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1457258 CTATCTTAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1460744 original size:25 final size:26
Alignment explanation
Indices: 1460695--1460747 Score: 74
Period size: 25 Copynumber: 2.1 Consensus size: 26
1460685 TTTTTTAAAT
*
1460695 TTTTAATTTATTATTATTTAATATAA
1 TTTTAATTTATTATTATATAATATAA
1460721 TTTTAA-TTATTATT-TATAAGTATAA
1 TTTTAATTTATTATTATATAA-TATAA
1460746 TT
1 TT
1460748 GTTATAATTC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
24 4 0.16
25 15 0.60
26 6 0.24
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (26 bp):
TTTTAATTTATTATTATATAATATAA
Found at i:1460945 original size:6 final size:6
Alignment explanation
Indices: 1460906--1460930 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
1460896 AAACTTCGTA
1460906 TATAAT TATAAT TATAAT TATAAT T
1 TATAAT TATAAT TATAAT TATAAT T
1460931 TATTTTATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (6 bp):
TATAAT
Found at i:1471630 original size:30 final size:29
Alignment explanation
Indices: 1471585--1471659 Score: 80
Period size: 32 Copynumber: 2.4 Consensus size: 29
1471575 ATTTTATAAT
*
1471585 AATTAATATAAA-AATAATTATAAAATTATTA
1 AATTAATTTAAATAATAA--ATAAAATT-TTA
*
1471616 ATATTATTTTAAATAATAAAATAAAATTTTA
1 A-ATTAATTTAAATAAT-AAATAAAATTTTA
1471647 AATTAATTTAAAT
1 AATTAATTTAAAT
1471660 CTAATTAATT
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
30 11 0.29
31 5 0.13
32 17 0.45
33 3 0.08
34 2 0.05
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (29 bp):
AATTAATTTAAATAATAAATAAAATTTTA
Found at i:1474704 original size:2 final size:2
Alignment explanation
Indices: 1474697--1474745 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
1474687 CTAAGCTCAC
1474697 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1474739 AT AT AT A
1 AT AT AT A
1474746 AGCCGCTACT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:1475935 original size:13 final size:15
Alignment explanation
Indices: 1475919--1475950 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
1475909 TTTAATTTTA
1475919 AATTTATTT-TA-TT
1 AATTTATTTATATTT
1475932 AATTTATTTATATTT
1 AATTTATTTATATTT
1475947 AATT
1 AATT
1475951 GGCTAAGTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 9 0.53
14 2 0.12
15 6 0.35
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (15 bp):
AATTTATTTATATTT
Found at i:1476261 original size:18 final size:18
Alignment explanation
Indices: 1476235--1476273 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
1476225 AGGAAAAAAG
*
1476235 AAGAGAGAAAAAGAGAAA
1 AAGAAAGAAAAAGAGAAA
* *
1476253 AAGAAAGAAATAGAGAGA
1 AAGAAAGAAAAAGAGAAA
1476271 AAG
1 AAG
1476274 TTAGAATACA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.69, C:0.00, G:0.28, T:0.03
Consensus pattern (18 bp):
AAGAAAGAAAAAGAGAAA
Found at i:1476962 original size:45 final size:45
Alignment explanation
Indices: 1476890--1476981 Score: 139
Period size: 45 Copynumber: 2.0 Consensus size: 45
1476880 TTTTCTCATG
* *
1476890 TTTCCCTTGCTAATTTGGGACTAATTTAAAGGTTTATAATGATGT
1 TTTCCCTTGCTAATTCGAGACTAATTTAAAGGTTTATAATGATGT
* * *
1476935 TTTCCCTTGGTGATTCGAGACTGATTTAAAGGTTTATAATGATGT
1 TTTCCCTTGCTAATTCGAGACTAATTTAAAGGTTTATAATGATGT
1476980 TT
1 TT
1476982 ATATGATGAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.25, C:0.11, G:0.20, T:0.45
Consensus pattern (45 bp):
TTTCCCTTGCTAATTCGAGACTAATTTAAAGGTTTATAATGATGT
Found at i:1477146 original size:15 final size:15
Alignment explanation
Indices: 1477126--1477156 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
1477116 CAACACATGT
1477126 TAGTTTATATTTTGA
1 TAGTTTATATTTTGA
1477141 TAGTTTATATTTTGA
1 TAGTTTATATTTTGA
1477156 T
1 T
1477157 GAGATTTTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.00, G:0.13, T:0.61
Consensus pattern (15 bp):
TAGTTTATATTTTGA
Found at i:1479925 original size:75 final size:75
Alignment explanation
Indices: 1479798--1479975 Score: 198
Period size: 75 Copynumber: 2.4 Consensus size: 75
1479788 TATAAGTGAG
* * * * *
1479798 CAACATAAAATCGCAACGCAAAGATGCTTTATTGGCCAAAATTGGTCAACTCAAAACTCAATGCA
1 CAACAAAAAATCGCAACGCAAAAATGCTCTATTGGCCAAAATTAGTCAACTCAAAACTCAACGCA
1479863 TATAAGCAGA
66 TATAAGCAGA
* ** * *
1479873 CAACAAAAAATCGCAACTCAAAAATGCTCTATTGGCCAAAATTAGTTGACTCAGAACTCGACGCA
1 CAACAAAAAATCGCAACGCAAAAATGCTCTATTGGCCAAAATTAGTCAACTCAAAACTCAACGCA
1479938 TATTAA-CA-A
66 TA-TAAGCAGA
* * * *
1479947 GCGACAAAAAATTGCAATGCAAACATGCT
1 -CAACAAAAAATCGCAACGCAAAAATGCT
1479976 GCAATGACCA
Statistics
Matches: 86, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
74 1 0.01
75 82 0.95
76 3 0.03
ACGTcount: A:0.43, C:0.22, G:0.14, T:0.21
Consensus pattern (75 bp):
CAACAAAAAATCGCAACGCAAAAATGCTCTATTGGCCAAAATTAGTCAACTCAAAACTCAACGCA
TATAAGCAGA
Found at i:1484752 original size:20 final size:20
Alignment explanation
Indices: 1484724--1484766 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
1484714 ATCCATAATA
*
1484724 TATCGATACA-AAACAAATTG
1 TATCAATACATAAACAAA-TG
*
1484744 TATCAATACATAAATAAATG
1 TATCAATACATAAACAAATG
1484764 TAT
1 TAT
1484767 TGATACATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.51, C:0.12, G:0.07, T:0.30
Consensus pattern (20 bp):
TATCAATACATAAACAAATG
Found at i:1486907 original size:17 final size:17
Alignment explanation
Indices: 1486887--1486921 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
1486877 CTTTAATACA
*
1486887 AAAATGAAAAAAATAAG
1 AAAACGAAAAAAATAAG
1486904 AAAACGAAAAAAATAAG
1 AAAACGAAAAAAATAAG
1486921 A
1 A
1486922 TAAAACAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.77, C:0.03, G:0.11, T:0.09
Consensus pattern (17 bp):
AAAACGAAAAAAATAAG
Found at i:1486931 original size:17 final size:16
Alignment explanation
Indices: 1486893--1486931 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 16
1486883 TACAAAAATG
1486893 AAAAAAATAAGAAAAC
1 AAAAAAATAAGAAAAC
1486909 GAAAAAAATAAGATAAAAC
1 -AAAAAAATAAG--AAAAC
1486928 AAAA
1 AAAA
1486932 GAATGGAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 11 0.55
18 4 0.20
19 5 0.25
ACGTcount: A:0.79, C:0.05, G:0.08, T:0.08
Consensus pattern (16 bp):
AAAAAAATAAGAAAAC
Found at i:1489778 original size:13 final size:13
Alignment explanation
Indices: 1489760--1489787 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
1489750 TACTGATAAA
1489760 TAAATTAATAATT
1 TAAATTAATAATT
1489773 TAAATTAATAATT
1 TAAATTAATAATT
1489786 TA
1 TA
1489788 TTATCATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
TAAATTAATAATT
Found at i:1491021 original size:20 final size:20
Alignment explanation
Indices: 1490996--1491033 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
1490986 ATATGGATAT
*
1490996 AATATATTAAAAATAAATAA
1 AATATAATAAAAATAAATAA
*
1491016 AATATAATATAAATAAAT
1 AATATAATAAAAATAAAT
1491034 GAATGTCTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (20 bp):
AATATAATAAAAATAAATAA
Found at i:1491918 original size:2 final size:2
Alignment explanation
Indices: 1491875--1491901 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
1491865 CACTTTTATT
1491875 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1491902 GAGTGTAGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1492691 original size:13 final size:13
Alignment explanation
Indices: 1492673--1492699 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1492663 ACATTATGCT
1492673 TTGTATCGATACA
1 TTGTATCGATACA
1492686 TTGTATCGATACA
1 TTGTATCGATACA
1492699 T
1 T
1492700 GAACAATTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:1492710 original size:20 final size:20
Alignment explanation
Indices: 1492685--1492722 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
1492675 GTATCGATAC
1492685 ATTGTATCGATACATGAACA
1 ATTGTATCGATACATGAACA
1492705 ATTGTATCGATACATGAA
1 ATTGTATCGATACATGAA
1492723 ATTGGCAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.39, C:0.13, G:0.16, T:0.32
Consensus pattern (20 bp):
ATTGTATCGATACATGAACA
Found at i:1492786 original size:13 final size:13
Alignment explanation
Indices: 1492768--1492792 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1492758 TACATGGTAC
1492768 ATTGTATCGATAT
1 ATTGTATCGATAT
1492781 ATTGTATCGATA
1 ATTGTATCGATA
1492793 CATGATGAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.44
Consensus pattern (13 bp):
ATTGTATCGATAT
Found at i:1492794 original size:33 final size:33
Alignment explanation
Indices: 1492749--1492817 Score: 95
Period size: 33 Copynumber: 2.1 Consensus size: 33
1492739 CTACCACTGT
* *
1492749 TTGTATCAATACATGGT-ACATTGTATCGATATA
1 TTGTATCAATACATGATGA-ATTGTATCGATACA
*
1492782 TTGTATCGATACATGATGAATTGTATCGATACA
1 TTGTATCAATACATGATGAATTGTATCGATACA
1492815 TTG
1 TTG
1492818 CTTCTAACGG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
33 31 0.97
34 1 0.03
ACGTcount: A:0.32, C:0.12, G:0.17, T:0.39
Consensus pattern (33 bp):
TTGTATCAATACATGATGAATTGTATCGATACA
Found at i:1496919 original size:25 final size:25
Alignment explanation
Indices: 1496891--1496952 Score: 69
Period size: 24 Copynumber: 2.6 Consensus size: 25
1496881 TGTTTCGATT
*
1496891 ATTAATTTTA-TCTTATTA-AATAGTG
1 ATTAATTATAGTC-TATTAGAA-AGTG
1496916 ATTAA-TATAGTCTATTAGAAAGTG
1 ATTAATTATAGTCTATTAGAAAGTG
1496940 ATTAA-TATAGTCT
1 ATTAATTATAGTCT
1496953 TATATATATT
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
24 25 0.74
25 9 0.26
ACGTcount: A:0.39, C:0.05, G:0.11, T:0.45
Consensus pattern (25 bp):
ATTAATTATAGTCTATTAGAAAGTG
Found at i:1496939 original size:24 final size:24
Alignment explanation
Indices: 1496904--1496952 Score: 82
Period size: 24 Copynumber: 2.0 Consensus size: 24
1496894 AATTTTATCT
1496904 TATTAAATAGTGATTAATATAGTC
1 TATTAAATAGTGATTAATATAGTC
1496928 TATTAGAA-AGTGATTAATATAGTC
1 TATTA-AATAGTGATTAATATAGTC
1496952 T
1 T
1496953 TATATATATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 22 0.92
25 2 0.08
ACGTcount: A:0.41, C:0.04, G:0.14, T:0.41
Consensus pattern (24 bp):
TATTAAATAGTGATTAATATAGTC
Found at i:1497540 original size:11 final size:11
Alignment explanation
Indices: 1497520--1497551 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
1497510 ATGCTAAACC
*
1497520 AAAATTTAAAG
1 AAAATGTAAAG
1497531 AAAATGTAAAG
1 AAAATGTAAAG
1497542 AAAATGTAAA
1 AAAATGTAAA
1497552 CTTGAAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.66, C:0.00, G:0.12, T:0.22
Consensus pattern (11 bp):
AAAATGTAAAG
Found at i:1499750 original size:28 final size:29
Alignment explanation
Indices: 1499681--1499752 Score: 85
Period size: 28 Copynumber: 2.6 Consensus size: 29
1499671 TTATTCTTTA
* *
1499681 TTGATTTCTTTTCCTTTGAAATTTCTTGC
1 TTGATTTCATTTCCTTTCAAATTTCTTGC
* *
1499710 TT-ATTTCGTTTCCTTTCATATTTCTTG-
1 TTGATTTCATTTCCTTTCAAATTTCTTGC
*
1499737 TTGATTTCACTTCCTT
1 TTGATTTCATTTCCTT
1499753 GATCTTTCTT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
27 2 0.05
28 33 0.89
29 2 0.05
ACGTcount: A:0.12, C:0.19, G:0.08, T:0.60
Consensus pattern (29 bp):
TTGATTTCATTTCCTTTCAAATTTCTTGC
Found at i:1503185 original size:20 final size:20
Alignment explanation
Indices: 1503149--1503196 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
1503139 AATTTGTATT
1503149 GATACAATAAGGTAATGTACC
1 GATAC-ATAAGGTAATGTACC
*
1503170 GATACATAA-GTGAATGTATC
1 GATACATAAGGT-AATGTACC
1503190 GATACAT
1 GATACAT
1503197 GCCTAAAATG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 2 0.08
20 18 0.72
21 5 0.20
ACGTcount: A:0.42, C:0.12, G:0.19, T:0.27
Consensus pattern (20 bp):
GATACATAAGGTAATGTACC
Found at i:1509567 original size:18 final size:16
Alignment explanation
Indices: 1509535--1509568 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 16
1509525 GAGAAAAACA
1509535 AAAACAAAAAGGAAAG
1 AAAACAAAAAGGAAAG
1509551 AAAACAAACATAGGAAAG
1 AAAACAAA-A-AGGAAAG
1509569 GACAAAAAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
17 1 0.06
18 7 0.44
ACGTcount: A:0.71, C:0.09, G:0.18, T:0.03
Consensus pattern (16 bp):
AAAACAAAAAGGAAAG
Found at i:1510135 original size:8 final size:8
Alignment explanation
Indices: 1510122--1510152 Score: 53
Period size: 8 Copynumber: 3.8 Consensus size: 8
1510112 TTAGATATTA
1510122 TTTTTTAT
1 TTTTTTAT
1510130 TTTTTTAT
1 TTTTTTAT
1510138 TTTTTTAT
1 TTTTTTAT
1510146 TTATTTT
1 TT-TTTT
1510153 GTTAATGTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 18 0.82
9 4 0.18
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (8 bp):
TTTTTTAT
Found at i:1512030 original size:29 final size:28
Alignment explanation
Indices: 1511966--1512047 Score: 92
Period size: 29 Copynumber: 2.8 Consensus size: 28
1511956 GTTTTATTTG
* *
1511966 ATATAAAAATTTATTTCAACATAAATCAAA
1 ATATAAAAAATTATTT-AA-ATAAATAAAA
*
1511996 AGATAAAAAATTATTTAAATATAATAAAA
1 ATATAAAAAATTATTTAAATA-AATAAAA
* *
1512025 ATATAAAAACTTAATTAAATAAA
1 ATATAAAAAATTATTTAAATAAA
1512048 ATTATAAAAT
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
28 5 0.11
29 26 0.58
30 14 0.31
ACGTcount: A:0.62, C:0.05, G:0.01, T:0.32
Consensus pattern (28 bp):
ATATAAAAAATTATTTAAATAAATAAAA
Found at i:1518920 original size:32 final size:32
Alignment explanation
Indices: 1518867--1518970 Score: 136
Period size: 32 Copynumber: 3.2 Consensus size: 32
1518857 GTTAGATTAT
* * *
1518867 TTTGGGTTATTTTCAGGTTCAGATCATTTTGGG
1 TTTGGGTTA-TTTCGGGTTCAGATCATTTCGGA
*
1518900 TTTGGGTCATTTCGGGTTCAGATCATTTCGGA
1 TTTGGGTTATTTCGGGTTCAGATCATTTCGGA
* * *
1518932 TTCGGATTATTTCGGGTTCAGATCATTTCGAA
1 TTTGGGTTATTTCGGGTTCAGATCATTTCGGA
1518964 TTTGGGT
1 TTTGGGT
1518971 CAATCAGGTT
Statistics
Matches: 61, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
32 53 0.87
33 8 0.13
ACGTcount: A:0.16, C:0.12, G:0.27, T:0.44
Consensus pattern (32 bp):
TTTGGGTTATTTCGGGTTCAGATCATTTCGGA
Found at i:1518925 original size:16 final size:16
Alignment explanation
Indices: 1518877--1518961 Score: 98
Period size: 16 Copynumber: 5.3 Consensus size: 16
1518867 TTTGGGTTAT
*
1518877 TTTCAGGTTCAGATCA
1 TTTCGGGTTCAGATCA
* ** *
1518893 TTTTGGGTTTGGGTCA
1 TTTCGGGTTCAGATCA
1518909 TTTCGGGTTCAGATCA
1 TTTCGGGTTCAGATCA
* * *
1518925 TTTCGGATTCGGATTA
1 TTTCGGGTTCAGATCA
1518941 TTTCGGGTTCAGATCA
1 TTTCGGGTTCAGATCA
1518957 TTTCG
1 TTTCG
1518962 AATTTGGGTC
Statistics
Matches: 54, Mismatches: 15, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
16 54 1.00
ACGTcount: A:0.16, C:0.15, G:0.26, T:0.42
Consensus pattern (16 bp):
TTTCGGGTTCAGATCA
Found at i:1520773 original size:152 final size:152
Alignment explanation
Indices: 1520150--1520772 Score: 562
Period size: 152 Copynumber: 4.1 Consensus size: 152
1520140 GCACCCTTGA
* * *
1520150 CATAAAAGCAACTCGGTAGTTTCATAAGACTAAGCTTC--AGGGAAAAATGCT-AAAAGGTCCCT
1 CATAAAAGCGACCCGGTAGTTTCATAAGACTAAGTTTCGAAGGGAAAAATGCTAAAAAGGTCCCT
* ** * * *
1520212 AAGGTTTATTATCGACTTAGAAGTGCAT-GATGATCTTAGAA-AACTTGGAAAAGATAAAAGTAA
66 AAGGTCTACCATCGACTTAGAAGTGC-TCAATGATCCTAGAAGAACTTGAAAAAG-TAAAAGTAA
* * * *
1520275 ACCCTAACGT-ATATATACCCTCGG
129 A-CCTAGCCTAATACATACCCTCAG
** * * * *** *
1520299 TGTAGAAGCGGACCCGGTAGTTTTATAAGGCTAAGTTTTTTAGGAAAAAAATGCTAAAAAGGTCC
1 CATAAAAGC-GACCCGGTAGTTTCATAAGACTAAGTTTCGAAGG-GAAAAATGCTAAAAAGGTCC
*
1520364 CTAAGGTCTACCATCGACTTAGAAATGCTGCTCAGTGATCCTAGAAG-ACTTGAAAAAGTAAAAG
64 CTAAGGTCTACCATCGACTTAG-AA-G-TGCTCAATGATCCTAGAAGAACTTGAAAAAGTAAAAG
* * * *
1520428 TGAACCTTTGCCTAATACATACCTTTAG
126 TAAACC-TAGCCTAATACATACCCTCAG
* * * * * * **
1520456 CACAAAAACGACCCGGTAGTTTCATAAGACTAGGTTTTGAGGGGAAAATTGAAAAAAAGGTCCCT
1 CATAAAAGCGACCCGGTAGTTTCATAAGACTAAGTTTCGAAGGGAAAAATGCTAAAAAGGTCCCT
* * * * * * * ***
1520521 AAGGTCTAACATCAACTTAAAATTGCACAGTGATCCTA-AAGGACTTGAAAAAGTAAAAACGAAC
66 AAGGTCTACCATCGACTTAGAAGTGCTCAATGATCCTAGAAGAACTTGAAAAAGTAAAAGTAAAC
* **
1520585 CTTCGCCTAATACATACCCTTGG
131 C-TAGCCTAATACATACCCTCAG
** * * **
1520608 CATTGAAGCGACCTGGTAGTTTCATAAGGCTAAGTTTCGAAGGGAAAAATGCTAAAAAGGTTTCT
1 CATAAAAGCGACCCGGTAGTTTCATAAGACTAAGTTTCGAAGGGAAAAATGCTAAAAAGGTCCCT
* *
1520673 AAGGTCTACCATCGACTTAGAAGTGCTCAATAATCCTA-AAGAACTAGAAAAAGTAAAAGTAAAC
66 AAGGTCTACCATCGACTTAGAAGTGCTCAATGATCCTAGAAGAACTTGAAAAAGTAAAAGTAAAC
*
1520737 CTAGGCCTAATACGTACCCTCAG
131 CTA-GCCTAATACATACCCTCAG
*
1520760 CATAAAAGTGACC
1 CATAAAAGCGACC
1520773 TAGTGACAAC
Statistics
Matches: 377, Mismatches: 83, Indels: 25
0.78 0.17 0.05
Matches are distributed among these distances:
149 6 0.02
150 23 0.06
151 4 0.01
152 187 0.50
153 9 0.02
154 30 0.08
155 39 0.10
156 42 0.11
157 37 0.10
ACGTcount: A:0.38, C:0.18, G:0.19, T:0.25
Consensus pattern (152 bp):
CATAAAAGCGACCCGGTAGTTTCATAAGACTAAGTTTCGAAGGGAAAAATGCTAAAAAGGTCCCT
AAGGTCTACCATCGACTTAGAAGTGCTCAATGATCCTAGAAGAACTTGAAAAAGTAAAAGTAAAC
CTAGCCTAATACATACCCTCAG
Found at i:1521078 original size:140 final size:144
Alignment explanation
Indices: 1520877--1521255 Score: 376
Period size: 156 Copynumber: 2.6 Consensus size: 144
1520867 AGGAAAATAA
* * * * *
1520877 CATAGATATGATGAATCTA-CCTTAAATACCCACATTTGACATAAAAACATCCCGGTGACAACCT
1 CATAAATAGGATGAACCTATCC-TAAATA-CCACATTTGGCATAAAAGCAT-CCGGTGACAACCT
* * * *
1520941 AAAACTCGATTTTAGGAAAA-TAC-T-TTTATGGGTATACTTTCGAC-AG-TCCTAAAAACTCTA
63 AAAACTCGATTCTAGAAAAATTACATCTTTATGAGTATACTTTCGACAAGATCCTAAAAACCCTA
1521001 AAAGACTTAAAAAAGAT
128 AAAGACTTAAAAAAGAT
* *
1521018 CATAAATAGGATGAACCTATCCTAAATACCACCTTTGGCATAAAAGCATCTTGGTGACAACCTAA
1 CATAAATAGGATGAACCTATCCTAAATACCACATTTGGCATAAAAGCATC-CGGTGACAACCTAA
* * *
1521083 GACTC-AGTTCTAAAAAAATTACAAAAATGCCTTTATGAGTATACTTTCGACATGAAAGTATCTT
65 AACTCGA-TTCTAGAAAAATTAC----AT--CTTTATGAGTATACTTTCGAC----AAG-ATCCT
*** *
1521147 GGTAACCCTAAAAGACTTAAAAAATAT
118 AAAAACCCTAAAAGACTTAAAAAAGAT
* * *
1521174 CATAACTGGGATAAACCTATCCTAAATACCACATTTGGCATAAAAGCATCCGGTGACAACCTAAA
1 CATAAATAGGATGAACCTATCCTAAATACCACATTTGGCATAAAAGCATCCGGTGACAACCTAAA
1521239 ACTCGATTCTAGAAAAA
66 ACTCGATTCTAGAAAAA
1521256 AAAATAAAAA
Statistics
Matches: 193, Mismatches: 25, Indels: 26
0.79 0.10 0.11
Matches are distributed among these distances:
139 2 0.01
140 43 0.22
141 25 0.13
142 2 0.01
146 1 0.01
149 19 0.10
154 2 0.01
155 27 0.14
156 72 0.37
ACGTcount: A:0.41, C:0.20, G:0.13, T:0.26
Consensus pattern (144 bp):
CATAAATAGGATGAACCTATCCTAAATACCACATTTGGCATAAAAGCATCCGGTGACAACCTAAA
ACTCGATTCTAGAAAAATTACATCTTTATGAGTATACTTTCGACAAGATCCTAAAAACCCTAAAA
GACTTAAAAAAGAT
Found at i:1521191 original size:156 final size:154
Alignment explanation
Indices: 1520998--1521393 Score: 484
Period size: 156 Copynumber: 2.6 Consensus size: 154
1520988 CCTAAAAACT
* *
1520998 CTAAAAGACTTAAAAAAGATCATAAATAGGATGAACCTATCCTAAATACCACCTTTGGCATAAAA
1 CTAAAAGACTTAAAAAA-ATCAT-AATGGGATAAACCTATCCTAAATACCACCTTTGGCATAAAA
* * * *
1521063 GCATCTTGGTGACAACCTAAGACTC-AGTTCT-AAAAAAATTACAAAAATGCCTTTATGAGTATA
64 GCATC-TGGTGACAACCTAAGACTCGA-TTCTAAAAAAAAATAAAAAAATGCCCTTATGAGCATA
* *
1521126 -CTTTCGACATGAAAGTATCTTGGTAACC
127 CCTTT-GACATAAAAGTATCTCGGTAACC
*
1521154 CTAAAAGACTTAAAAAATATCATAACTGGGATAAACCTATCCTAAATACCACATTTGGCATAAAA
1 CTAAAAGACTTAAAAAA-ATCATAA-TGGGATAAACCTATCCTAAATACCACCTTTGGCATAAAA
* * *
1521219 GCATCCGGTGACAACCTAAAACTCGATTCTAGAAAAAAAAATAAAAAAATGCCCTTATGGGCATA
64 GCATCTGGTGACAACCTAAGACTCGATTCT--AAAAAAAAATAAAAAAATGCCCTTATGAGCATA
* *
1521284 CCTTTGACATAAAAGTATCTCGGTCATC
127 CCTTTGACATAAAAGTATCTCGGTAACC
** *
1521312 CTAAAAGA--TAAAAAAAT-A-AATGGGA-AGAACCTATCCTAAATACCACCTTCAGCATAAATG
1 CTAAAAGACTTAAAAAAATCATAATGGGATA-AACCTATCCTAAATACCACCTTTGGCATAAAAG
*
1521372 CATCTGGTGACAACCTAGGACT
65 CATCTGGTGACAACCTAAGACT
1521394 TGATGTTGGA
Statistics
Matches: 211, Mismatches: 22, Indels: 18
0.84 0.09 0.07
Matches are distributed among these distances:
151 1 0.00
152 53 0.25
153 2 0.01
154 1 0.00
155 25 0.12
156 71 0.34
158 54 0.26
159 4 0.02
ACGTcount: A:0.42, C:0.20, G:0.13, T:0.24
Consensus pattern (154 bp):
CTAAAAGACTTAAAAAAATCATAATGGGATAAACCTATCCTAAATACCACCTTTGGCATAAAAGC
ATCTGGTGACAACCTAAGACTCGATTCTAAAAAAAAATAAAAAAATGCCCTTATGAGCATACCTT
TGACATAAAAGTATCTCGGTAACC
Found at i:1523419 original size:165 final size:161
Alignment explanation
Indices: 1523135--1523481 Score: 352
Period size: 165 Copynumber: 2.1 Consensus size: 161
1523125 TGAAATAATT
* * *
1523135 TGAATTTAATGACAATATTAGATAAATTTTAAAATTTTTAAACCAAGAAAAATCTTCTCAAAAAA
1 TGAATTAAATAACAATATTAGATAAATTTTAAAAATTTTAAACCAAGAAAAATCTTCTCAAAAAA
1523200 ATTATAAAGAAGAAAACTTTGTTTTTCAAAAATAGGAAATTTCAAGAAAAAAATGAAAAA-CTCA
66 ATTATAAAGAAGAAAACTTTGTTTTTCAAAAATAGGAAATTTCAAGAAAAAAATGAAAAACCT-A
1523264 GGAAAAAGAAAT-AAGTTTT-TAAAAATTGATTTACTA
130 GG-AAAA-AAATGAA-TTTTCTAAAAA-TGATTTA--A
* ***
1523300 TGAATTAAATAACAATATTAGATGAATTTTAAAAATTTTAAATTGAGAAAAATC-TCTCATAAAA
1 TGAATTAAATAACAATATTAGATAAATTTTAAAAATTTTAAACCAAGAAAAATCTTCTCA-AAAA
* * * * * * *
1523364 CATTTATTGAATAA-AAAACTTAT-TTTTTGAGAAGAT--GAGAATTTTAAG-GAAAAATGAAAA
65 -AATTA-TAAAGAAGAAAACTT-TGTTTTTCA-AAAATAGGA-AATTTCAAGAAAAAAATGAAAA
*
1523424 ACCTATGAAAAAAATGAATTTTCTAAAAATGATTTAA
125 ACCTAGGAAAAAAATGAATTTTCTAAAAATGATTTAA
*
1523461 TGGTAATTAAATAATAATATT
1 T-G-AATTAAATAACAATATT
1523482 TAAAGAATTT
Statistics
Matches: 155, Mismatches: 16, Indels: 24
0.79 0.08 0.12
Matches are distributed among these distances:
161 2 0.01
162 1 0.01
163 31 0.20
164 17 0.11
165 67 0.43
166 27 0.17
167 10 0.06
ACGTcount: A:0.51, C:0.06, G:0.10, T:0.33
Consensus pattern (161 bp):
TGAATTAAATAACAATATTAGATAAATTTTAAAAATTTTAAACCAAGAAAAATCTTCTCAAAAAA
ATTATAAAGAAGAAAACTTTGTTTTTCAAAAATAGGAAATTTCAAGAAAAAAATGAAAAACCTAG
GAAAAAAATGAATTTTCTAAAAATGATTTAA
Found at i:1524652 original size:85 final size:83
Alignment explanation
Indices: 1524503--1525275 Score: 522
Period size: 85 Copynumber: 9.1 Consensus size: 83
1524493 AATTTACCTA
* * * *
1524503 GATAAAAAGGTTAATCGAGATTGAACCGACAAGTCAACAAAGAATAAAAGGATTTACCCAAGACT
1 GATAAAAAGGTTGACCGA-ATTGAATCGACAAGTCAACAAAGAATAAAAGGATTTACCTAAGACT
** * * *
1524568 AAGCCAATATGCAAATAAAT
65 AAGCTGACA-GCAAACAAAG
* * * * * *
1524588 GATAAAAAGGTTGACTGTAATTGAATCGACAAGTTAACAAAGGACAAAAGGATTTATCTGAGACT
1 GATAAAAAGGTTGACCG-AATTGAATCGACAAGTCAACAAAGAATAAAAGGATTTACCTAAGACT
*
1524653 AAGCTGACAAACAAACAAAG
65 AAGCTGAC-AGCAAACAAAG
* * * *
1524673 GATTAAAAGGTTAACGGGGATTGAATCGACAAGTCAACAAAGAATAAAAGGATTTACCTAAGACT
1 GATAAAAAGGTTGAC-CGAATTGAATCGACAAGTCAACAAAGAATAAAAGGATTTACCTAAGACT
1524738 AAGCTGACAGCAAACAAAG
65 AAGCTGACAGCAAACAAAG
* * * * * *
1524757 GATAAAAATGTGGACCGAGATTGAA-CTGACAAGTCAACAAAGGATAAAAGGATTTATCTAGGGC
1 GATAAAAAGGTTGACCGA-ATTGAATC-GACAAGTCAACAAAGAATAAAAGGATTTACCTAAGAC
*
1524821 TAAG-TCGATAGACAAACAAAG
64 TAAGCT-GACAG-CAAACAAAG
** * * * * *
1524842 GATAAAAAGGTCAATCGGGATTGAACCGACAAGTCAACAAAGGATAAGAA-GATTTACCTAGGAC
1 GATAAAAAGGTTGA-CCGAATTGAATCGACAAGTCAACAAAGAATAA-AAGGATTTACCTAAGAC
** *
1524906 TAAGAAGA-AGGGCAAAAAAAG
64 TAAGCTGACA--GCAAACAAAG
* * * * ** * * * *
1524927 GATAAAAAGGTTGATCAAGATTGAACCGATAAGTCAACAAATTATAAAAAGATTTACTTTAGACC
1 GATAAAAAGGTTGACCGA-ATTGAATCGACAAGTCAACAAAGAATAAAAGGATTTACCTAAGACT
** * *
1524992 AAGCCAACAAGTAGACAAAG
65 AAGCTGAC-AGCAAACAAAG
* ** * * * * * *
1525012 GATAAGAAGGTTGATTGGGACTGAA-CTAGCAAGTCAACAAAAGAA-AAAGGGAATTACCTAGGA
1 GATAAAAAGGTTGA-CCGAATTGAATCGA-CAAGTCAAC-AAAGAATAAAAGGATTTACCTAAGA
* *
1525075 CTAAGCTAATAGGCAAACAAAG
63 CTAAGCTGACA-GCAAACAAAG
* * * * * * *
1525097 AAGAAAAAGGTTGACCAAGATTGAA-CTAACAAGTCAATAAAGAATAAAAAGATTTGCC-AAGGA
1 GATAAAAAGGTTGACCGA-ATTGAATC-GACAAGTCAACAAAGAATAAAAGGATTTACCTAA-GA
** *
1525160 CTAAGCCAACAAGCAAACAAAA
63 CTAAGCTGAC-AGCAAACAAAG
* * * * **
1525182 GATAAAAAGGTTGATCGAGATTGAACCGATAAGTTAACAAA-AGATAAAAGGATTTACCCGAGAC
1 GATAAAAAGGTTGACCGA-ATTGAATCGACAAGTCAACAAAGA-ATAAAAGGATTTACCTAAGAC
*
1525246 TAAG-TCGATAGGCAAACAAAG
64 TAAGCT-GACA-GCAAACAAAG
1525267 GATAAAAAG
1 GATAAAAAG
1525276 ATTTACCCAG
Statistics
Matches: 539, Mismatches: 118, Indels: 62
0.75 0.16 0.09
Matches are distributed among these distances:
83 3 0.01
84 83 0.15
85 434 0.81
86 18 0.03
87 1 0.00
ACGTcount: A:0.48, C:0.14, G:0.21, T:0.18
Consensus pattern (83 bp):
GATAAAAAGGTTGACCGAATTGAATCGACAAGTCAACAAAGAATAAAAGGATTTACCTAAGACTA
AGCTGACAGCAAACAAAG
Found at i:1525249 original size:170 final size:170
Alignment explanation
Indices: 1524503--1525275 Score: 730
Period size: 170 Copynumber: 4.6 Consensus size: 170
1524493 AATTTACCTA
*
1524503 GATAAAAAGGTTAATCGAGATTGAACCGACAAGTCAAC-AAAGAATAAAAGGATTTACCCAAGAC
1 GATAAAAAGGTTAATCGGGATTGAACCGACAAGTCAACAAAAG-ATAAAAGGATTTACCCAAGAC
* * * * ** *
1524567 TAAGCCAATATGCAAATAAATGATAAAAAGGTTGACTGTA-ATTGAA-TCGACAAGTTAACAAAG
65 TAAGCTAATAGGCAAACAAAGGATAAAAAGGTTGAC-CAAGATTGAACT-GACAAGTCAACAAAG
* * * ** *
1524630 GACAAAAGGATTTATCT-GAGACTAAGCTGACAAACAAACAAAG
128 GATAAAAAGATTTACCTAG-GACTAAGCCAACAAGCAAACAAAG
* * *
1524673 GATTAAAAGGTTAA-CGGGGATTGAATCGACAAGTCAAC-AAAGAATAAAAGGATTTACCTAAGA
1 GATAAAAAGGTTAATC-GGGATTGAACCGACAAGTCAACAAAAG-ATAAAAGGATTTACCCAAGA
* * * * *
1524736 CTAAGCTGACA-GCAAACAAAGGATAAAAATGTGGACCGAGATTGAACTGACAAGTCAACAAAGG
64 CTAAGCTAATAGGCAAACAAAGGATAAAAAGGTTGACCAAGATTGAACTGACAAGTCAACAAAGG
* * * * * *
1524800 ATAAAAGGATTTATCTAGGGCTAAGTCGA-TAGACAAACAAAG
129 ATAAAAAGATTTACCTAGGACTAAGCCAACAAG-CAAACAAAG
* * * *
1524842 GATAAAAAGGTCAATCGGGATTGAACCGACAAGTCAACAAAGGATAAGAA-GATTTACCTAGGAC
1 GATAAAAAGGTTAATCGGGATTGAACCGACAAGTCAACAAAAGATAA-AAGGATTTACCCAAGAC
* * * * * *
1524906 TAAG--AAGAAGGGCAAAAAAAGGATAAAAAGGTTGATCAAGATTGAACCGATAAGTCAACAAAT
65 TAAGCTAA-TA-GGCAAACAAAGGATAAAAAGGTTGACCAAGATTGAACTGACAAGTCAACAAAG
* * * * *
1524969 TATAAAAAGATTTACTTTA-GACCAAGCCAACAAGTAGACAAAG
128 GATAAAAAGATTTAC-CTAGGACTAAGCCAACAAGCAAACAAAG
* * * * * * * *
1525012 GATAAGAAGGTTGATTGGGACTGAA-CTAGCAAGTCAACAAAAGA-AAAAGGGAATTACCTAGGA
1 GATAAAAAGGTTAATCGGGATTGAACCGA-CAAGTCAACAAAAGATAAAA-GGATTTACCCAAGA
* * * * *
1525075 CTAAGCTAATAGGCAAACAAAGAAGAAAAAGGTTGACCAAGATTGAACTAACAAGTCAATAAAGA
64 CTAAGCTAATAGGCAAACAAAGGATAAAAAGGTTGACCAAGATTGAACTGACAAGTCAACAAAGG
* * *
1525140 ATAAAAAGATTTGCCAAGGACTAAGCCAACAAGCAAACAAAA
129 ATAAAAAGATTTACCTAGGACTAAGCCAACAAGCAAACAAAG
* * * * *
1525182 GATAAAAAGGTTGATCGAGATTGAACCGATAAGTTAACAAAAGATAAAAGGATTTACCCGAGACT
1 GATAAAAAGGTTAATCGGGATTGAACCGACAAGTCAACAAAAGATAAAAGGATTTACCCAAGACT
*
1525247 AAG-TCGATAGGCAAACAAAGGATAAAAAG
66 AAGCT-AATAGGCAAACAAAGGATAAAAAG
1525276 ATTTACCCAG
Statistics
Matches: 495, Mismatches: 86, Indels: 44
0.79 0.14 0.07
Matches are distributed among these distances:
167 1 0.00
168 5 0.01
169 135 0.27
170 341 0.69
171 11 0.02
172 2 0.00
ACGTcount: A:0.48, C:0.14, G:0.21, T:0.18
Consensus pattern (170 bp):
GATAAAAAGGTTAATCGGGATTGAACCGACAAGTCAACAAAAGATAAAAGGATTTACCCAAGACT
AAGCTAATAGGCAAACAAAGGATAAAAAGGTTGACCAAGATTGAACTGACAAGTCAACAAAGGAT
AAAAAGATTTACCTAGGACTAAGCCAACAAGCAAACAAAG
Found at i:1525267 original size:255 final size:252
Alignment explanation
Indices: 1524503--1525275 Score: 625
Period size: 255 Copynumber: 3.0 Consensus size: 252
1524493 AATTTACCTA
** * * * * * *
1524503 GATAAAAAGGTTAATCGAGATTGAACCGACAAGTCAAC-AAAGAATAAAAGGATTTACCCAAGAC
1 GATAAAAAGGTGGACCGAGACTGAACTGACAAGTCAACAAAAG-ATAAAAGGAATTACCTAGGAC
* * * ** ** * * *
1524567 TAAGCCAATATG-CAAATAAATG-ATAAAAAGGTTGACTGTA-ATTGAATCGACAAGTTAACAAA
65 TAAGTCAATA-GACAAACAAA-GAAGAAAAAGGTCAAC-CAAGATTGAACCAACAAGTCAACAAA
* * * * * * * * * * *
1524629 GGACAAAAGGATTTATC-TGAGACTAAGCTGACAAACAAACAAAGGATTAAAAGGTT-AACGGGG
127 GAATAAAAAGATTTACCAAG-GACTAAGC-AACAAGCAAACAAAAGATAAAAAGGTTGATC-GAG
* *
1524692 ATTGAATCGACAAGTCAAC-AAAGAATAAAAGGATTTACCTAAGACTAAGCTGACAGCAAACAAA
189 ATTGAACCGATAAGTCAACAAAAG-ATAAAAGGATTTACCTAAGACTAAGC-GACAGCAAACAAA
1524756 G
252 G
* * * * * *
1524757 GATAAAAATGTGGACCGAGATTGAACTGACAAGTCAACAAAGGATAAAAGGATTTATCTAGGGCT
1 GATAAAAAGGTGGACCGAGACTGAACTGACAAGTCAACAAAAGATAAAAGGAATTACCTAGGACT
* * * * ** * *
1524822 AAGTCGATAGACAAACAAAGGATAAAAAGGTCAATCGGGATTGAACCGACAAGTCAACAAAGGAT
66 AAGTCAATAGACAAACAAAGAAGAAAAAGGTCAACCAAGATTGAACCAACAAGTCAACAAAGAAT
* * * *
1524887 AAGAAGATTTACCTAGGACTAAG-AAGAAGGGCAAA-AAAAGGATAAAAAGGTTGATCAAGATTG
131 AAAAAGATTTACCAAGGACTAAGCAACAA--GCAAACAAAA-GATAAAAAGGTTGATCGAGATTG
** * * * * * * *
1524950 AACCGATAAGTCAACAAATTATAAAAAGATTTACTTTAGACCAAGCCAACAAGTAGACAAAG
193 AACCGATAAGTCAACAAAAGATAAAAGGATTTACCTAAGACTAAG-CGAC-AGCAAACAAAG
* * ** *
1525012 GATAAGAAGGTTGATTGGGACTGAACT-AGCAAGTCAACAAAAGA-AAAAGGGAATTACCTAGGA
1 GATAAAAAGGTGGACCGAGACTGAACTGA-CAAGTCAACAAAAGATAAAA-GGAATTACCTAGGA
* ** * *
1525075 CTAAG-CTAATAGGCAAACAAAGAAGAAAAAGGTTGACCAAGATTGAACTAACAAGTCAATAAAG
64 CTAAGTC-AATAGACAAACAAAGAAGAAAAAGGTCAACCAAGATTGAACCAACAAGTCAACAAAG
*
1525139 AATAAAAAGATTTGCCAAGGACTAAGCCAACAAGCAAACAAAAGATAAAAAGGTTGATCGAGATT
128 AATAAAAAGATTTACCAAGGACTAAG-CAACAAGCAAACAAAAGATAAAAAGGTTGATCGAGATT
* ** *
1525204 GAACCGATAAGTTAACAAAAGATAAAAGGATTTACCCGAGACTAAGTCGATAGGCAAACAAAG
192 GAACCGATAAGTCAACAAAAGATAAAAGGATTTACCTAAGACTAAG-CGACA-GCAAACAAAG
1525267 GATAAAAAG
1 GATAAAAAG
1525276 ATTTACCCAG
Statistics
Matches: 412, Mismatches: 88, Indels: 37
0.77 0.16 0.07
Matches are distributed among these distances:
252 3 0.01
253 5 0.01
254 179 0.43
255 217 0.53
256 4 0.01
257 4 0.01
ACGTcount: A:0.48, C:0.14, G:0.21, T:0.18
Consensus pattern (252 bp):
GATAAAAAGGTGGACCGAGACTGAACTGACAAGTCAACAAAAGATAAAAGGAATTACCTAGGACT
AAGTCAATAGACAAACAAAGAAGAAAAAGGTCAACCAAGATTGAACCAACAAGTCAACAAAGAAT
AAAAAGATTTACCAAGGACTAAGCAACAAGCAAACAAAAGATAAAAAGGTTGATCGAGATTGAAC
CGATAAGTCAACAAAAGATAAAAGGATTTACCTAAGACTAAGCGACAGCAAACAAAG
Found at i:1525272 original size:128 final size:128
Alignment explanation
Indices: 1525135--1525377 Score: 317
Period size: 128 Copynumber: 1.9 Consensus size: 128
1525125 ACAAGTCAAT
* * *
1525135 AAAGAATAAAAAGATTTGCCAAGGACTAAGCCAACAAGCAAACAAAAGATA-AAAAGGTTGATCG
1 AAAGAATAAAAAGATTTACCAAGGACTAAACCAACAAGCAAACAAAAGATACAAAA-GTTGACCG
* * * *
1525199 AGATTGAACCGATAAGTTAACAAAAGATAAAAGGATTTACCCGAGACTAAGTCGATAGGCAAAC
65 AGATAGAACCAACAAGCTAACAAAAGATAAAAGGATTTACCCGAGACTAAGTCGATAGGCAAAC
* * *** * * *
1525263 AAAGGATAAAAAGATTTACCCAGGACTAAATGGATAGGCAAACAAAGGATACAAAAGTTGACCGA
1 AAAGAATAAAAAGATTTACCAAGGACTAAACCAACAAGCAAACAAAAGATACAAAAGTTGACCGA
* *
1525328 GATAGAACCAACAAGCTAACAAAGGATAAAAGGATTTACTCGAGACTAAG
66 GATAGAACCAACAAGCTAACAAAAGATAAAAGGATTTACCCGAGACTAAG
1525378 CCAACAAGCA
Statistics
Matches: 97, Mismatches: 17, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
128 93 0.96
129 4 0.04
ACGTcount: A:0.49, C:0.15, G:0.20, T:0.16
Consensus pattern (128 bp):
AAAGAATAAAAAGATTTACCAAGGACTAAACCAACAAGCAAACAAAAGATACAAAAGTTGACCGA
GATAGAACCAACAAGCTAACAAAAGATAAAAGGATTTACCCGAGACTAAGTCGATAGGCAAAC
Found at i:1525349 original size:85 final size:85
Alignment explanation
Indices: 1525260--1526170 Score: 777
Period size: 85 Copynumber: 10.8 Consensus size: 85
1525250 TCGATAGGCA
* ***
1525260 AACAAAGGATAAAAAGATTTACCCAGGACTAAATGGATAGGCAAACAAAGGATACAAAAGTTGAC
1 AACAAAGGATAAAAGGATTTACCCAGGACTAAGCCGATAGGCAAACAAAGGATACAAAAGTTGAC
*
1525325 CGAGATAGAACCAACAAG-C
66 CGAGATTGAACCAACAAGTC
* * * * * *
1525344 TAACAAAGGATAAAAGGATTTACTC-GAGACTAAGCCAACAAGCAAATAAAGGATGCAAAAG-TG
1 -AACAAAGGATAAAAGGATTTACCCAG-GACTAAGCCGATAGGCAAACAAAGGATACAAAAGTTG
* * * *
1525407 ACCAAGATTAAACTAATAAGTC
64 ACCGAGATTGAACCAACAAGTC
* * ** * * * *
1525429 AATAAAAGATAAAAATATTTACCC-GAGACTAAGCCGACAGGAAAATAAAGGATAAAAAAGTTGA
1 AACAAAGGATAAAAGGATTTACCCAG-GACTAAGCCGATAGGCAAACAAAGGATACAAAAGTTGA
*
1525493 CCGGGATTG-A--AACAAGTC
65 CCGAGATTGAACCAACAAGTC
* * * *
1525511 AACAAAGGATAAAAAGATTTACCCGGGACTAAGCTGATAGGCAAACAAAAGATA-AAAAGGTTGA
1 AACAAAGGATAAAAGGATTTACCCAGGACTAAGCCGATAGGCAAACAAAGGATACAAAA-GTTGA
* * * *
1525575 CTGGGATTGAACCAATAAGTG
65 CCGAGATTGAACCAACAAGTC
* * * * * * *
1525596 AACAACGGATAAAAGGATTTACCTAGAACTAAGCCAACAAGCAAACAAAGGATA-AAAAGGTTGG
1 AACAAAGGATAAAAGGATTTACCCAGGACTAAGCCGATAGGCAAACAAAGGATACAAAA-GTTGA
* * *
1525660 CTGGGATTGAACCAGCAAGTC
65 CCGAGATTGAACCAACAAGTC
* * * * * *
1525681 AAAAAAGTATAAGAGGATTTACCC-GAGACTAAGCTGACAGGCAAATAAAGGATA-AAAAGTTTG
1 AACAAAGGATAAAAGGATTTACCCAG-GACTAAGCCGATAGGCAAACAAAGGATACAAAAG-TTG
*
1525744 ACCGAGATTGAACCAACAAATC
64 ACCGAGATTGAACCAACAAGTC
* * * * * *
1525766 AACAAAAGAAAAAAGAATTTACCC-GAGACCAAGCCAATAAGCAAACAAAGGATACAAAAGTTGA
1 AACAAAGGATAAAAGGATTTACCCAG-GACTAAGCCGATAGGCAAACAAAGGATACAAAAGTTGA
* * * *
1525830 TCGAGATTGAACTAATAAGCC
65 CCGAGATTGAACCAACAAGTC
* * ** * * * *
1525851 AACAAAGGACAAAAGGATTTTCTTAGGACTAAGCAGATAGGAAAACAAAGGACACAAAAGTTAAC
1 AACAAAGGATAAAAGGATTTACCCAGGACTAAGCCGATAGGCAAACAAAGGATACAAAAGTTGAC
* * * *
1525916 TGAGATTCAACCGATAAGTC
66 CGAGATTGAACCAACAAGTC
* * * * * * *
1525936 AACAAAGGATTAAAGGATTTAGCCAAGACTAAGCTGAAAGGCAAACAATGGATAAAAAAGTTGAC
1 AACAAAGGATAAAAGGATTTACCCAGGACTAAGCCGATAGGCAAACAAAGGATACAAAAGTTGAC
* * *
1526001 CGAGATTAAATCGACAAGTC
66 CGAGATTGAACCAACAAGTC
* ** * * * * *
1526021 AATAAAGGATAAAAGGATTTACCCAAAACTAAGTCGATAGGCAAATAAAGGTTACAAAAGTTAAT
1 AACAAAGGATAAAAGGATTTACCCAGGACTAAGCCGATAGGCAAACAAAGGATACAAAAGTTGAC
**
1526086 CGAGATTGAACTGACAAGTC
66 CGAGATTGAACCAACAAGTC
* ** * * *
1526106 AACAAAGGATAAAAAGATTTACCTGGGACTAAGCCAACAGACAAACAAAGGATA-AAAAGATTGA
1 AACAAAGGATAAAAGGATTTACCCAGGACTAAGCCGATAGGCAAACAAAGGATACAAAAG-TTGA
1526170 C
65 C
1526171 TGCGTATAGC
Statistics
Matches: 660, Mismatches: 153, Indels: 26
0.79 0.18 0.03
Matches are distributed among these distances:
81 4 0.01
82 64 0.10
83 2 0.00
84 76 0.12
85 508 0.77
86 6 0.01
ACGTcount: A:0.48, C:0.15, G:0.20, T:0.17
Consensus pattern (85 bp):
AACAAAGGATAAAAGGATTTACCCAGGACTAAGCCGATAGGCAAACAAAGGATACAAAAGTTGAC
CGAGATTGAACCAACAAGTC
Found at i:1525383 original size:43 final size:42
Alignment explanation
Indices: 1525135--1526167 Score: 228
Period size: 43 Copynumber: 24.4 Consensus size: 42
1525125 ACAAGTCAAT
* * * *
1525135 AAAGAATAAAAAGATTTGCCAAGGACTAAGCCAACAAGCAAAC
1 AAAGGATAAAAGGATTTACCGA-GACTAAGCCAACAAGCAAAC
* * * * * * **
1525178 AAAAGATAAAAAGG-TTGATCGAGATTGAA-CCGATAAGTTAAC
1 AAAGGAT-AAAAGGATTTACCGAGACT-AAGCCAACAAGCAAAC
* * * * *
1525220 AAAAGATAAAAGGATTTACCCGAGACTAAGTCGATAGGCAAAC
1 AAAGGATAAAAGGATTTA-CCGAGACTAAGCCAACAAGCAAAC
* * **** * *
1525263 AAAGGATAAAAAGATTTACCCAGGACTAAATGGATAGGCAAAC
1 AAAGGATAAAAGGATTTACCGA-GACTAAGCCAACAAGCAAAC
* * * *
1525306 AAAGGATACAAAAG-TTGACCGAGA-TAGAACCAACAAGCTAAC
1 AAAGGATA-AAAGGATTTACCGAGACTA-AGCCAACAAGCAAAC
*
1525348 AAAGGATAAAAGGATTTACTCGAGACTAAGCCAACAAGCAAAT
1 AAAGGATAAAAGGATTTAC-CGAGACTAAGCCAACAAGCAAAC
* * * * * *
1525391 AAAGGATGCAAAA-G--TGACCAAGATTAAACTAATAAGTCAATA-
1 AAAGGAT--AAAAGGATTTACCGAGACTAAGCCAACAAG-CAA-AC
** * * * *
1525433 AAA-GATAAAAATATTTACCCGAGACTAAGCCGACAGGAAAAT
1 AAAGGATAAAAGGATTTA-CCGAGACTAAGCCAACAAGCAAAC
* * * * *
1525475 AAAGGATAAAA-AAGTTGACCGGGA-T-TG-AAACAAGTC-AAC
1 AAAGGATAAAAGGA-TTTACCGAGACTAAGCCAACAAG-CAAAC
* * ** * *
1525514 AAAGGATAAAAAGATTTACCCGGGACTAAGCTGATAGGCAAAC
1 AAAGGATAAAAGGATTTA-CCGAGACTAAGCCAACAAGCAAAC
* * * * * * **
1525557 AAAAGATAAAAAGG-TTGACTGGGATTGAA-CCAATAAGTGAAC
1 AAAGGAT-AAAAGGATTTACCGAGACT-AAGCCAACAAGCAAAC
* *
1525599 AACGGATAAAAGGATTTACCTAGAACTAAGCCAACAAGCAAAC
1 AAAGGATAAAAGGATTTACCGAG-ACTAAGCCAACAAGCAAAC
** * * * *
1525642 AAAGGATAAAAAGG-TTGGCTGGGATTGAA-CCAGCAAGTCAAA-
1 AAAGGAT-AAAAGGATTTACCGAGACT-AAGCCAACAAG-CAAAC
* * ** * *
1525684 AAAGTATAAGAGGATTTACCCGAGACTAAGCTGACAGGCAAAT
1 AAAGGATAAAAGGATTTA-CCGAGACTAAGCCAACAAGCAAAC
* * *
1525727 AAAGGATAAAAAG-TTTGACCGAGATTGAA-CCAACAAATC-AAC
1 AAAGGATAAAAGGATTT-ACCGAGACT-AAGCCAAC-AAGCAAAC
* * * * *
1525769 AAAAGAAAAAAGAATTTACCCGAGACCAAGCCAATAAGCAAAC
1 AAAGGATAAAAGGATTTA-CCGAGACTAAGCCAACAAGCAAAC
* * * * * * *
1525812 AAAGGATACAAAAG-TTGATCGAGATTGAA-CTAATAAGCCAAC
1 AAAGGATA-AAAGGATTTACCGAGACT-AAGCCAACAAGCAAAC
* * ** * * *
1525854 AAAGGACAAAAGGATTTTCTTAGGACTAAG-CAGATAGGAAAAC
1 AAAGGATAAAAGGATTTACCGA-GACTAAGCCA-ACAAGCAAAC
* * * * * * *
1525897 AAAGGACACAAAAG-TTAACTGAGATTCAA-CCGATAAGTC-AAC
1 AAAGGATA-AAAGGATTTACCGAGACT-AAGCCAACAAG-CAAAC
* * * *
1525939 AAAGGATTAAAGGATTTAGCCAAGACTAAGCTGAA-AGGCAAAC
1 AAAGGATAAAAGGATTTA-CCGAGACTAAGC-CAACAAGCAAAC
* * * * ** * *
1525982 AATGGATAAAA-AAGTTGACCGAGATTAAATCGACAAGTC-AAT
1 AAAGGATAAAAGGA-TTTACCGAGACTAAGCCAACAAG-CAAAC
* * * * * * *
1526024 AAAGGATAAAAGGATTTACCCAAAACTAAGTCGATAGGCAAAT
1 AAAGGATAAAAGGATTTA-CCGAGACTAAGCCAACAAGCAAAC
* * * * * **
1526067 AAAGGTTACAAAAG-TTAATCGAGATTGAA-CTGACAAGTC-AAC
1 AAAGGATA-AAAGGATTTACCGAGACT-AAGCCAACAAG-CAAAC
* *
1526109 AAAGGATAAAAAGATTTACCTGGGACTAAGCCAAC-AGACAAAC
1 AAAGGATAAAAGGATTTACC-GAGACTAAGCCAACAAG-CAAAC
*
1526152 AAAGGATAAAAAGATT
1 AAAGGATAAAAGGATT
1526168 GACTGCGTAT
Statistics
Matches: 708, Mismatches: 206, Indels: 152
0.66 0.19 0.14
Matches are distributed among these distances:
39 24 0.03
40 8 0.01
41 56 0.08
42 257 0.36
43 323 0.46
44 36 0.05
45 4 0.01
ACGTcount: A:0.48, C:0.15, G:0.20, T:0.17
Consensus pattern (42 bp):
AAAGGATAAAAGGATTTACCGAGACTAAGCCAACAAGCAAAC
Found at i:1525899 original size:255 final size:250
Alignment explanation
Indices: 1525260--1526172 Score: 912
Period size: 255 Copynumber: 3.6 Consensus size: 250
1525250 TCGATAGGCA
***
1525260 AACAAAGGATAAAAAGATTTACCC-AGGACTAAATGGATAGGCAAACAAAGGATACAAAAGTTGA
1 AACAAAGGA-AAAAAGATTTACCCGA-GACTAAGCCGATAGGCAAACAAAGGATACAAAAGTTGA
* * * * *
1525324 CCGAGATAGAACCAACAAGCTAACAAAGGATAAAAGGATTTA-CTCGAGACTAAGCCAACAAGCA
64 TCGAGATTGAACCAACAAGCCAACAAAGGATAAAAGGATTTACCTAG-GACTAAGCCAACAAGAA
* * ** * * **
1525388 AATAAAGGATGCAAAAG-TGACCAAGATTAAACTAATAAGTCAATAAAAGATAAAAATATTTACC
128 AACAAAGGAT-AAAAAGTTGACTGAGATTAAACCAGTAAGTCAA-AAAAGAT-AAAGGATTTACC
* * *
1525452 CGAGACTAAGCCGACAGGAAAATAAAGGATAAAAAAGTTGACCGGGATTG-A-AACAAGTC
190 CGAGACTAAGCTGACAGGCAAATAAAGGATAAAAAAGTTGACCGAGATTGAACAACAAGTC
* * *
1525511 AACAAAGGATAAAAAGATTTACCCGGGACTAAGCTGATAGGCAAACAAAAGATA-AAAAGGTTGA
1 AACAAAGGA-AAAAAGATTTACCCGAGACTAAGCCGATAGGCAAACAAAGGATACAAAA-GTTGA
* * ** * * *
1525575 -CTGGGATTGAACCAATAAGTGAACAACGGATAAAAGGATTTACCTAGAACTAAGCCAACAAGCA
64 TC-GAGATTGAACCAACAAGCCAACAAAGGATAAAAGGATTTACCTAGGACTAAGCCAACAAGAA
* * * *
1525639 AACAAAGGATAAAAAGGTTGGCTGGGATTGAACCAGCAAGTCAAAAAAGTATAAGAGGATTTACC
128 AACAAAGGATAAAAA-GTTGACTGAGATTAAACCAGTAAGTCAAAAAAG-ATAA-AGGATTTACC
*
1525704 CGAGACTAAGCTGACAGGCAAATAAAGGAT-AAAAAGTTTGACCGAGATTGAACCAACAAATC
190 CGAGACTAAGCTGACAGGCAAATAAAGGATAAAAAAG-TTGACCGAGATTGAA-CAACAAGTC
* * * *
1525766 AACAAAAGAAAAAAGAATTTACCCGAGACCAAGCCAATAAGCAAACAAAGGATACAAAAGTTGAT
1 AACAAAGGAAAAAAG-ATTTACCCGAGACTAAGCCGATAGGCAAACAAAGGATACAAAAGTTGAT
* * * * * * *
1525831 CGAGATTGAACTAATAAGCCAACAAAGGACAAAAGGATTTTCTTAGGACTAAG-CAGATAGGAAA
65 CGAGATTGAACCAACAAGCCAACAAAGGATAAAAGGATTTACCTAGGACTAAGCCA-ACAAGAAA
* * * * *
1525895 ACAAAGGACACAAAAGTTAACTGAGATTCAACC-GATAAGTCAACAAAGGATTAAAGGATTTAGC
129 ACAAAGGATA-AAAAGTTGACTGAGATTAAACCAG-TAAGTCAA-AAAAGA-TAAAGGATTTACC
* * * * * *
1525959 CAAGACTAAGCTGAAAGGCAAACAATGGATAAAAAAGTTGACCGAGATTAAATCGACAAGTC
190 CGAGACTAAGCTGACAGGCAAATAAAGGATAAAAAAGTTGACCGAGATTGAA-CAACAAGTC
* * * * * * * *
1526021 AATAAAGGATAAAAGGATTTACCCAAAACTAAGTCGATAGGCAAATAAAGGTTACAAAAGTTAAT
1 AACAAAGGA-AAAAAGATTTACCCGAGACTAAGCCGATAGGCAAACAAAGGATACAAAAGTTGAT
** * * *
1526086 CGAGATTGAACTGACAAGTCAACAAAGGATAAAAAGATTTACCTGGGACTAAGCCAAC-AGACAA
65 CGAGATTGAACCAACAAGCCAACAAAGGATAAAAGGATTTACCTAGGACTAAGCCAACAAGA-AA
1526150 ACAAAGGATAAAAAGATTGACTG
129 ACAAAGGATAAAAAG-TTGACTG
1526173 CGTATAGCTA
Statistics
Matches: 549, Mismatches: 88, Indels: 46
0.80 0.13 0.07
Matches are distributed among these distances:
250 9 0.02
251 126 0.23
252 71 0.13
253 1 0.00
254 16 0.03
255 297 0.54
256 29 0.05
ACGTcount: A:0.48, C:0.15, G:0.20, T:0.17
Consensus pattern (250 bp):
AACAAAGGAAAAAAGATTTACCCGAGACTAAGCCGATAGGCAAACAAAGGATACAAAAGTTGATC
GAGATTGAACCAACAAGCCAACAAAGGATAAAAGGATTTACCTAGGACTAAGCCAACAAGAAAAC
AAAGGATAAAAAGTTGACTGAGATTAAACCAGTAAGTCAAAAAAGATAAAGGATTTACCCGAGAC
TAAGCTGACAGGCAAATAAAGGATAAAAAAGTTGACCGAGATTGAACAACAAGTC
Found at i:1526429 original size:15 final size:15
Alignment explanation
Indices: 1526411--1526450 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 15
1526401 TGATTTATTC
1526411 TTCATTCATTTTTCA
1 TTCATTCATTTTTCA
1526426 TTCA--C-TTTTT-A
1 TTCATTCATTTTTCA
1526437 TTCATTCATTTTTC
1 TTCATTCATTTTTC
1526451 TTTTTATAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 8
0.72 0.00 0.28
Matches are distributed among these distances:
11 5 0.24
12 5 0.24
13 2 0.10
14 5 0.24
15 4 0.19
ACGTcount: A:0.17, C:0.20, G:0.00, T:0.62
Consensus pattern (15 bp):
TTCATTCATTTTTCA
Found at i:1527004 original size:92 final size:92
Alignment explanation
Indices: 1526686--1527020 Score: 287
Period size: 92 Copynumber: 3.6 Consensus size: 92
1526676 TGTGGTCATG
* * ** ** * * *
1526686 TGATGCATCAATACTATTTAATGGCTAAAAAAAGGGGGTTATGATTGGGAATAAATGGTCGAGAT
1 TGATGCATCAATACCATTTAATGGTTAAATGAA-GGGAATATGATTGGGAATAAGTGGGCGGGAT
** * ** *
1526751 ATCCTTACCGTAAGAAAATTAGGCCTTGA
65 ATCCTTACCCCAAGAAAATCA-AACTTTA
* * * * * ** * * *
1526780 -GATGCATCAATACCATATAGTAGCTAGATGAAGGGAATATGATTGGGAATGTGTGTGCAGAATA
1 TGATGCATCAATACCATTTAATGGTTAAATGAAGGGAATATGATTGGGAATAAGTGGGCGGGATA
* *
1526844 TCCTTGCCCCAAGAAAATCAAGCTTTA
66 TCCTTACCCCAAGAAAATCAAACTTTA
* * * * ** *
1526871 TGATGCATGAATACCATCTAGTGATTGGATGAAGGGAATATGATTGGGAATGAGTGGGCGGGATA
1 TGATGCATCAATACCATTTAATGGTTAAATGAAGGGAATATGATTGGGAATAAGTGGGCGGGATA
*
1526936 TCTTTACCCCAAGAAAATCAAACTTTA
66 TCCTTACCCCAAGAAAATCAAACTTTA
* * *
1526963 TGATGCATCAATACTATTTAATGGTTAAATGATGTGG-ATATGGTTGGGAATAAGTGGG
1 TGATGCATCAATACCATTTAATGGTTAAATGAAG-GGAATATGATTGGGAATAAGTGGG
1527021 ATGCACTTTT
Statistics
Matches: 192, Mismatches: 47, Indels: 6
0.78 0.19 0.02
Matches are distributed among these distances:
91 4 0.02
92 161 0.84
93 27 0.14
ACGTcount: A:0.34, C:0.12, G:0.25, T:0.29
Consensus pattern (92 bp):
TGATGCATCAATACCATTTAATGGTTAAATGAAGGGAATATGATTGGGAATAAGTGGGCGGGATA
TCCTTACCCCAAGAAAATCAAACTTTA
Found at i:1527098 original size:78 final size:78
Alignment explanation
Indices: 1526961--1527163 Score: 262
Period size: 78 Copynumber: 2.6 Consensus size: 78
1526951 AATCAAACTT
* * * * * * * * *
1526961 TATGATGCATCAATACTATTTAATGGTTAAATGATGTGGATATGGTTGGGAATAAGTGGGATGCA
1 TATGATGCATCAATACCATCTAATAGCTAGATGAAGAGGATATGATTAGGAATAAGTGGGATGCA
**
1527026 CTTTTTGTGGTCC
66 CCCTTTGTGGTCC
* *
1527039 TGTGATGCATCAATACCATCTAATAGCTAGATGAAGAGGATATGATTAGGAATATGTGGGATGCA
1 TATGATGCATCAATACCATCTAATAGCTAGATGAAGAGGATATGATTAGGAATAAGTGGGATGCA
1527104 CCCTTTGTGGTCC
66 CCCTTTGTGGTCC
* * *
1527117 TATGATGCATCAATACCATCTAGTAGCAAGATGAAGGGGATATGATT
1 TATGATGCATCAATACCATCTAATAGCTAGATGAAGAGGATATGATT
1527164 GAGAATGAGT
Statistics
Matches: 108, Mismatches: 17, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
78 108 1.00
ACGTcount: A:0.30, C:0.12, G:0.26, T:0.32
Consensus pattern (78 bp):
TATGATGCATCAATACCATCTAATAGCTAGATGAAGAGGATATGATTAGGAATAAGTGGGATGCA
CCCTTTGTGGTCC
Found at i:1527351 original size:91 final size:91
Alignment explanation
Indices: 1527183--1527356 Score: 246
Period size: 91 Copynumber: 1.9 Consensus size: 91
1527173 TAAGAGAGAC
* * * *
1527183 ATCCTTGCCCTAAGGAAATCAGGCTTTGTGATGCATCAATACATTTAGTGGTTGGATGAAGGGAA
1 ATCCTTGCCCTAAGCAAATCAGGCTTTATGATGCATCAATACATTTAATGATTGGATGAAGGGAA
*
1527248 TATGACTTGGAATAAGTGGGCAGGAT
66 TATGACTCGGAATAAGTGGGCAGGAT
1527274 ATCCTTGCCCTAAGCAAATCAGG-TTGTATGATGCATCAATACAATTTAATGATTGGATGAAGTG
1 ATCCTTGCCCTAAGCAAATCAGGCTT-TATGATGCATCAATAC-ATTTAATGATTGGATGAAG-G
*
1527338 G-ATATGA-TCGGAATGAGTG
63 GAATATGACTCGGAATAAGTG
1527357 CGTTACGCCC
Statistics
Matches: 74, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
90 2 0.03
91 47 0.64
92 23 0.31
93 2 0.03
ACGTcount: A:0.31, C:0.13, G:0.26, T:0.29
Consensus pattern (91 bp):
ATCCTTGCCCTAAGCAAATCAGGCTTTATGATGCATCAATACATTTAATGATTGGATGAAGGGAA
TATGACTCGGAATAAGTGGGCAGGAT
Found at i:1528042 original size:73 final size:73
Alignment explanation
Indices: 1527965--1528106 Score: 214
Period size: 73 Copynumber: 1.9 Consensus size: 73
1527955 CCAATGTTAA
* * *
1527965 CTAAAGTGCAGATGTGCATGAAACCATGCAATTGT-AGCCATCAATAAAGTGGAAAATGCATACG
1 CTAAAGTGCAGATATGCATGAAACAATGCAACTGTAAG-CATCAATAAAGTGGAAAATGCATACG
1528029 AAATGTCAT
65 AAATGTCAT
* * *
1528038 CTAAAGTGCATATATGCATGAAACAATGCAACTGTAAGCTTCAATAAAGTGGCAAATGCATACGA
1 CTAAAGTGCAGATATGCATGAAACAATGCAACTGTAAGCATCAATAAAGTGGAAAATGCATACGA
1528103 AATG
66 AATG
1528107 GTGCAAATGC
Statistics
Matches: 62, Mismatches: 6, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
73 60 0.97
74 2 0.03
ACGTcount: A:0.41, C:0.16, G:0.20, T:0.23
Consensus pattern (73 bp):
CTAAAGTGCAGATATGCATGAAACAATGCAACTGTAAGCATCAATAAAGTGGAAAATGCATACGA
AATGTCAT
Done.