Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold41
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2798036
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.34
Warning! 10448 characters in sequence are not A, C, G, or T
File 17 of 21
Found at i:2059954 original size:16 final size:17
Alignment explanation
Indices: 2059935--2059994 Score: 67
Period size: 16 Copynumber: 3.8 Consensus size: 17
2059925 TTTGAACTTA
2059935 AAATGATCC-GAACTCG
1 AAATGATCCTGAACTCG
2059951 AAATGA-CCTGAACTCG
1 AAATGATCCTGAACTCG
*
2059967 AAATGAT-CT-AAATCCG
1 AAATGATCCTGAACT-CG
2059983 AAATGAT-CTGAA
1 AAATGATCCTGAA
2059995 TTTGAATACT
Statistics
Matches: 39, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
15 5 0.13
16 32 0.82
17 2 0.05
ACGTcount: A:0.42, C:0.20, G:0.17, T:0.22
Consensus pattern (17 bp):
AAATGATCCTGAACTCG
Found at i:2061259 original size:22 final size:24
Alignment explanation
Indices: 2061217--2061278 Score: 65
Period size: 26 Copynumber: 2.5 Consensus size: 24
2061207 CTTACATCTG
2061217 TTAATTTTAATTTAAATTTAAA-AAAT
1 TTAA-TTTAA-TT-AATTTAAATAAAT
2061243 TTAA-TTAATTAATTTAAATTTAAAT
1 TTAATTTAATTAATTTAAA--TAAAT
2061268 TTAATTTAATT
1 TTAATTTAATT
2061279 CGATTTGATA
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
22 8 0.25
23 2 0.06
24 4 0.12
25 8 0.25
26 10 0.31
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (24 bp):
TTAATTTAATTAATTTAAATAAAT
Found at i:2061342 original size:16 final size:16
Alignment explanation
Indices: 2061316--2061383 Score: 91
Period size: 16 Copynumber: 4.2 Consensus size: 16
2061306 AAATCGATCG
2061316 ATTTAAAATTTAAAATA
1 ATTT-AAATTTAAAATA
*
2061333 ATTTAAATTTAAAATG
1 ATTTAAATTTAAAATA
* **
2061349 ATTTAAACTCGAAATA
1 ATTTAAATTTAAAATA
2061365 ATTTAAATTTAAAATA
1 ATTTAAATTTAAAATA
2061381 ATT
1 ATT
2061384 CGTACCGAAA
Statistics
Matches: 43, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
16 39 0.91
17 4 0.09
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.41
Consensus pattern (16 bp):
ATTTAAATTTAAAATA
Found at i:2062170 original size:16 final size:16
Alignment explanation
Indices: 2062149--2062183 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
2062139 TGATTAACCT
* *
2062149 GAATCTGAAATGATCC
1 GAATCTAAAATAATCC
2062165 GAATCTAAAATAATCC
1 GAATCTAAAATAATCC
2062181 GAA
1 GAA
2062184 CTCGAAATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.46, C:0.17, G:0.14, T:0.23
Consensus pattern (16 bp):
GAATCTAAAATAATCC
Found at i:2062362 original size:27 final size:29
Alignment explanation
Indices: 2062310--2062365 Score: 80
Period size: 27 Copynumber: 2.0 Consensus size: 29
2062300 CTAGATCGGA
*
2062310 TAAAAAGCAAAGTGAAAAGATTGAAAAAT
1 TAAAAAGCAAAGTGAAAAGATAGAAAAAT
*
2062339 TAAAAAG-AAA-TGAAAATATAGAAAAAT
1 TAAAAAGCAAAGTGAAAAGATAGAAAAAT
2062366 AAGATTTTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 15 0.60
28 3 0.12
29 7 0.28
ACGTcount: A:0.66, C:0.02, G:0.14, T:0.18
Consensus pattern (29 bp):
TAAAAAGCAAAGTGAAAAGATAGAAAAAT
Found at i:2062518 original size:16 final size:16
Alignment explanation
Indices: 2062497--2062546 Score: 57
Period size: 16 Copynumber: 3.1 Consensus size: 16
2062487 TAGTCATTGT
2062497 AAGTTTAAATTAAAAA
1 AAGTTTAAATTAAAAA
*
2062513 AAGTTTAATTTGAAAAA
1 AAGTTTAAATT-AAAAA
*
2062530 TAAATTT-AATTAAAAA
1 -AAGTTTAAATTAAAAA
2062546 A
1 A
2062547 TAAAACTTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
15 1 0.03
16 15 0.52
17 8 0.28
18 5 0.17
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.34
Consensus pattern (16 bp):
AAGTTTAAATTAAAAA
Found at i:2062545 original size:17 final size:17
Alignment explanation
Indices: 2062504--2062565 Score: 56
Period size: 18 Copynumber: 3.6 Consensus size: 17
2062494 TGTAAGTTTA
*
2062504 AATT-AAAAA-AAGTTT
1 AATTAAAAAATAAATTT
*
2062519 AATTTGAAAAATAAATTT
1 AA-TTAAAAAATAAATTT
*
2062537 AATTAAAAAATAAAACTT
1 AATTAAAAAAT-AAATTT
*
2062555 ATTTAAAAAAT
1 AATTAAAAAAT
2062566 GAGCTAAGTC
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
15 2 0.05
16 2 0.05
17 13 0.33
18 22 0.56
ACGTcount: A:0.61, C:0.02, G:0.03, T:0.34
Consensus pattern (17 bp):
AATTAAAAAATAAATTT
Found at i:2062649 original size:20 final size:21
Alignment explanation
Indices: 2062624--2062671 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 21
2062614 ATGTTTTTAT
* *
2062624 TATAATATTTA-ATTTTATAA
1 TATAATATATATATTTCATAA
2062644 TATAAT-TATATATTTCATAA
1 TATAATATATATATTTCATAA
2062664 TAATAATA
1 T-ATAATA
2062672 ATAATAATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 3 0.13
20 15 0.65
21 5 0.22
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (21 bp):
TATAATATATATATTTCATAA
Found at i:2062668 original size:3 final size:3
Alignment explanation
Indices: 2062660--2062690 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
2062650 TATATATTTC
2062660 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
2062691 ATTTATTTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:2070924 original size:23 final size:22
Alignment explanation
Indices: 2070891--2070933 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
2070881 AAATTTTATA
2070891 AAAGGCCAAATTAAAAAATTTGG
1 AAAGGCCAAA-TAAAAAATTTGG
* *
2070914 AAAGGCTAAATAATAAATTT
1 AAAGGCCAAATAAAAAATTT
2070934 ACCTTATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 9 0.50
23 9 0.50
ACGTcount: A:0.53, C:0.07, G:0.14, T:0.26
Consensus pattern (22 bp):
AAAGGCCAAATAAAAAATTTGG
Found at i:2076108 original size:20 final size:20
Alignment explanation
Indices: 2076083--2076136 Score: 83
Period size: 20 Copynumber: 2.7 Consensus size: 20
2076073 ATTACAAGCA
*
2076083 ATGTATCGATACAAT-TCATC
1 ATGTATCGATACAATGT-ACC
2076103 ATGTATCGATACAATGTACC
1 ATGTATCGATACAATGTACC
2076123 ATGTATCGATACAA
1 ATGTATCGATACAA
2076137 ATAGTGGTAA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 31 0.97
21 1 0.03
ACGTcount: A:0.37, C:0.19, G:0.13, T:0.31
Consensus pattern (20 bp):
ATGTATCGATACAATGTACC
Found at i:2077415 original size:50 final size:52
Alignment explanation
Indices: 2077355--2077468 Score: 162
Period size: 52 Copynumber: 2.2 Consensus size: 52
2077345 AAATAACAAG
2077355 GTTGGAGTATCCT-GA-TTATAGAAAATCGGTATTTT-GAAAATAAAATCGGA
1 GTTGGAGTATCCTCGATTTATAGAAAATCGGTATTTTAG-AAATAAAATCGGA
* * * *
2077405 GTTGGAGTATCCTCGATTTGTGGAAAATTGGTATTTTAGAAATAAAATCGGG
1 GTTGGAGTATCCTCGATTTATAGAAAATCGGTATTTTAGAAATAAAATCGGA
2077457 GTTGGAGTATCC
1 GTTGGAGTATCC
2077469 CCTCGAAAAT
Statistics
Matches: 57, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
50 13 0.23
51 2 0.04
52 41 0.72
53 1 0.02
ACGTcount: A:0.32, C:0.09, G:0.25, T:0.33
Consensus pattern (52 bp):
GTTGGAGTATCCTCGATTTATAGAAAATCGGTATTTTAGAAATAAAATCGGA
Found at i:2077603 original size:28 final size:27
Alignment explanation
Indices: 2077563--2077636 Score: 105
Period size: 28 Copynumber: 2.7 Consensus size: 27
2077553 GATATAAAGC
2077563 CGGGGTTGGAGTATCCTCTCG-GAAATAA
1 CGGGGTTGGAGTATCC-C-CGAGAAATAA
2077591 CGGGGTTGGAGTATCCCCGATGAAATAA
1 CGGGGTTGGAGTATCCCCGA-GAAATAA
*
2077619 TGGGGTTGGAGTATCCCC
1 CGGGGTTGGAGTATCCCC
2077637 AATTGTGAAA
Statistics
Matches: 43, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
26 2 0.05
27 1 0.02
28 40 0.93
ACGTcount: A:0.23, C:0.19, G:0.34, T:0.24
Consensus pattern (27 bp):
CGGGGTTGGAGTATCCCCGAGAAATAA
Found at i:2077698 original size:109 final size:108
Alignment explanation
Indices: 2077438--2077756 Score: 451
Period size: 109 Copynumber: 2.9 Consensus size: 108
2077428 AAAATTGGTA
* ** * * * *
2077438 TTTTAGAAATAAAATCGGGGTTGGAGTATCCCCTCGAAAATAATGGGATTAGAGTATCCCCGATG
1 TTTTAGATATAAAGCCGGGGTTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCGATG
* *
2077503 AAATAACGGGGTTGGAGTACCCCTGATTATGAAAAAAAATAATAT
66 AAATAACGGGGTTGGAGTACCCC-GATTGTG-AAAAAAACAATAT
*
2077548 TTTTAGATATAAAGCCGGGGTTGGAGTAT-CCTCTCGGAAATAACGGGGTTGGAGTATCCCCGAT
1 TTTTAGATATAAAGCCGGGGTTGGAGTATCCCT-TCGAAAATAACGGGGTTGGAGTATCCCCGAT
* * *
2077612 GAAATAATGGGGTTGGAGTATCCCCAATTGTGAAAAATACAATAT
65 GAAATAACGGGGTTGGAGTA-CCCCGATTGTGAAAAAAACAATAT
* *
2077657 TTTTAGATATAAAGCCGGGGTTAGAGTATCCCTTCGAAAATAACAGGGTTGGAGTATCCCCGATG
1 TTTTAGATATAAAGCCGGGGTTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCGATG
2077722 AAATAACGGGGTTGGAGTACCCCCGATTGTGAAAA
66 AAATAACGGGGTTGGAGTA-CCCCGATTGTGAAAA
2077757 TTGGTGTTTT
Statistics
Matches: 187, Mismatches: 19, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
109 103 0.55
110 80 0.43
111 4 0.02
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.26
Consensus pattern (108 bp):
TTTTAGATATAAAGCCGGGGTTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCGATG
AAATAACGGGGTTGGAGTACCCCGATTGTGAAAAAAACAATAT
Found at i:2077714 original size:28 final size:27
Alignment explanation
Indices: 2077674--2077747 Score: 87
Period size: 28 Copynumber: 2.7 Consensus size: 27
2077664 TATAAAGCCG
*
2077674 GGGTTAGAGTATCCCTTCGA-AAATAACA
1 GGGTTGGAGTATCCC--CGAGAAATAACA
*
2077702 GGGTTGGAGTATCCCCGATGAAATAACG
1 GGGTTGGAGTATCCCCGA-GAAATAACA
*
2077730 GGGTTGGAGTACCCCCGA
1 GGGTTGGAGTATCCCCGA
2077748 TTGTGAAAAT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
26 3 0.07
28 38 0.93
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (27 bp):
GGGTTGGAGTATCCCCGAGAAATAACA
Found at i:2077748 original size:28 final size:28
Alignment explanation
Indices: 2077694--2077748 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
2077684 ATCCCTTCGA
*
2077694 AAATAACAGGGTTGGAGTATCCCCGATG
1 AAATAACAGGGTTGGAGTACCCCCGATG
*
2077722 AAATAACGGGGTTGGAGTACCCCCGAT
1 AAATAACAGGGTTGGAGTACCCCCGAT
2077749 TGTGAAAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.31, C:0.20, G:0.29, T:0.20
Consensus pattern (28 bp):
AAATAACAGGGTTGGAGTACCCCCGATG
Found at i:2077874 original size:51 final size:51
Alignment explanation
Indices: 2077732--2077899 Score: 187
Period size: 51 Copynumber: 3.3 Consensus size: 51
2077722 AAATAACGGG
* * * *
2077732 GTTGGAGTACCCCCGATTGTG-AAAATTGGTGTTTTGGCAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGAGAAAAATTGATGTTTTGGAAATAAAATCGGA
* * * * *
2077782 GTTGGAGTATCCCCGATTGCGATAAATCGATGCTTTAGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGAGAAAAATTGATGTTTTGGAAATAAAATCGGA
* * ** *
2077833 GTTGGAGTATCCCCGATTAAGAAAAATTGACGTTTTGGAAATGGAACCGG-
1 GTTGGAGTATCCCCGATTGAGAAAAATTGATGTTTTGGAAATAAAATCGGA
2077883 GATTGGAGTATCCCCGA
1 G-TTGGAGTATCCCCGA
2077900 GATGAAAAAT
Statistics
Matches: 98, Mismatches: 18, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
50 20 0.20
51 78 0.80
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.27
Consensus pattern (51 bp):
GTTGGAGTATCCCCGATTGAGAAAAATTGATGTTTTGGAAATAAAATCGGA
Found at i:2080255 original size:20 final size:20
Alignment explanation
Indices: 2080203--2080326 Score: 81
Period size: 20 Copynumber: 5.8 Consensus size: 20
2080193 AAAATGCCTG
* *
2080203 AATGTATCGATAAAATGAGC
1 AATGTATCGATACAATGAGA
2080223 AATGTATCGATACAATGCA-A
1 AATGTATCGATACAATG-AGA
* *
2080243 AATGTATCGATACATCTGGGTAAACCCA
1 AATGTATCGATACA-AT--G---A--GA
*
2080271 GAATGTATCGATACAATGAGC
1 -AATGTATCGATACAATGAGA
*
2080292 AATGTATCGATACAATTA-A
1 AATGTATCGATACAATGAGA
2080311 CAATGTATCGATACAA
1 -AATGTATCGATACAA
2080327 ACTGTAAAAA
Statistics
Matches: 84, Mismatches: 9, Indels: 22
0.73 0.08 0.19
Matches are distributed among these distances:
20 62 0.74
21 2 0.02
23 2 0.02
25 1 0.01
26 1 0.01
28 2 0.02
29 14 0.17
ACGTcount: A:0.42, C:0.15, G:0.17, T:0.26
Consensus pattern (20 bp):
AATGTATCGATACAATGAGA
Found at i:2083058 original size:13 final size:13
Alignment explanation
Indices: 2083040--2083066 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
2083030 ATATTAACCC
2083040 ATGTATCGATACA
1 ATGTATCGATACA
2083053 ATGTATCGATACA
1 ATGTATCGATACA
2083066 A
1 A
2083067 GATACAAGGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2087039 original size:21 final size:21
Alignment explanation
Indices: 2086997--2087040 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
2086987 CTTGTTTTTC
* *
2086997 TTAGCTAATTCATTATTTTCA
1 TTAGCTAATTCATTAATATCA
**
2087018 TTAGCTAATTTTTTAATATCA
1 TTAGCTAATTCATTAATATCA
2087039 TT
1 TT
2087041 TTGCAATTTG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.11, G:0.05, T:0.55
Consensus pattern (21 bp):
TTAGCTAATTCATTAATATCA
Found at i:2089282 original size:33 final size:33
Alignment explanation
Indices: 2089240--2089304 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
2089230 CATTACAAGC
2089240 AATGTATCGAGACAAT-TCATCATGTATCGATAT
1 AATGTATCGAGACAATAT-ATCATGTATCGATAT
*
2089273 AATGTATCGATACAATATATCATGTATCGATA
1 AATGTATCGAGACAATATATCATGTATCGATA
2089305 CATACAATGG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
33 29 0.97
34 1 0.03
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (33 bp):
AATGTATCGAGACAATATATCATGTATCGATAT
Found at i:2089297 original size:20 final size:20
Alignment explanation
Indices: 2089269--2089306 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
2089259 TCATGTATCG
2089269 ATATAATGTATCGATACAAT
1 ATATAATGTATCGATACAAT
*
2089289 ATATCATGTATCGATACA
1 ATATAATGTATCGATACA
2089307 TACAATGGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.42, C:0.13, G:0.11, T:0.34
Consensus pattern (20 bp):
ATATAATGTATCGATACAAT
Found at i:2089377 original size:19 final size:19
Alignment explanation
Indices: 2089333--2089388 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
2089323 CTACCAGTTT
* **
2089333 CATGTATCGATGCAATTGTC
1 CATGTATCGATACAA-TGAA
2089353 CATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
2089372 CATGTATCGATACAATG
1 CATGTATCGATACAATG
2089389 TATCGATACA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 19 0.58
20 14 0.42
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:2089391 original size:13 final size:13
Alignment explanation
Indices: 2089373--2089399 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
2089363 TACAATGAAC
2089373 ATGTATCGATACA
1 ATGTATCGATACA
2089386 ATGTATCGATACA
1 ATGTATCGATACA
2089399 A
1 A
2089400 AGCATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2091607 original size:58 final size:57
Alignment explanation
Indices: 2091545--2091768 Score: 225
Period size: 58 Copynumber: 3.9 Consensus size: 57
2091535 CTAACTTAAG
* * * * * *
2091545 GACTTTTATGTAATTTTATGAATTTTCATGTTATTTACGTCATTTTCCATAATCTAGA
1 GACTTTGATGCAATTTTATGAATTTTCATGTCATTTAGGTCATTTTTCATGA-CTAGA
* *
2091603 GACTTTGATGCAATTTTATTAATTTTGATGTCATTTAGGTCATTTTTCATGAC-ATGA
1 GACTTTGATGCAATTTTATGAATTTTCATGTCATTTAGGTCATTTTTCATGACTA-GA
* * * * * * * *
2091660 GGACTTAGATGTATTTTTTTTAATTTTTATGTCATTTAGGTCATTTTTTATGACATAGG
1 -GACTTTGATGCAATTTTATGAATTTTCATGTCATTTAGGTCATTTTTCATGAC-TAGA
* * * *
2091719 GACTTTAATGCAATTTTATGAATTTTGATGCCATTTAGGGCATTTTTCAT
1 GACTTTGATGCAATTTTATGAATTTTCATGTCATTTAGGTCATTTTTCAT
2091769 ACAATTTTAT
Statistics
Matches: 137, Mismatches: 25, Indels: 8
0.81 0.15 0.05
Matches are distributed among these distances:
56 1 0.01
57 3 0.02
58 131 0.96
59 1 0.01
60 1 0.01
ACGTcount: A:0.26, C:0.10, G:0.15, T:0.49
Consensus pattern (57 bp):
GACTTTGATGCAATTTTATGAATTTTCATGTCATTTAGGTCATTTTTCATGACTAGA
Found at i:2098162 original size:13 final size:13
Alignment explanation
Indices: 2098144--2098168 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2098134 CAAAGATCAG
2098144 TGTATCGATACAA
1 TGTATCGATACAA
2098157 TGTATCGATACA
1 TGTATCGATACA
2098169 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2098249 original size:13 final size:13
Alignment explanation
Indices: 2098231--2098255 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2098221 CAAAAACAAA
2098231 TGTATCGATACAT
1 TGTATCGATACAT
2098244 TGTATCGATACA
1 TGTATCGATACA
2098256 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2099122 original size:67 final size:67
Alignment explanation
Indices: 2099008--2099250 Score: 303
Period size: 67 Copynumber: 3.8 Consensus size: 67
2098998 TAGGCTCGAA
* *
2099008 GATAAAGGTGCCAATATGCTGATTCAAGGCCAACAATATTAGACTTAAAGATGATGATGAGAAAA
1 GATAAAGATGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGATGATGAGAAAA
2099073 GT
66 GT
** * * *
2099075 GATAAAGATGCCAATATATTGATTCATGGCCAACGATATTGGGCTTAAAGATGATGAT--G--AA
1 GATAAAGATGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGATGATGAGAAAA
2099136 --
66 GT
2099136 G-----G-TGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGATGATGAGAAAA
1 GATAAAGATGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGATGATGAGAAAA
2099195 GT
66 GT
* * * *
2099197 GATAAAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCTTAAAGATGA
1 GATAAAGATGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGA
2099251 GAAAAAGGAT
Statistics
Matches: 148, Mismatches: 16, Indels: 24
0.79 0.09 0.13
Matches are distributed among these distances:
55 45 0.30
56 1 0.01
57 1 0.01
59 2 0.01
61 2 0.01
63 2 0.01
65 1 0.01
66 1 0.01
67 93 0.63
ACGTcount: A:0.38, C:0.12, G:0.23, T:0.26
Consensus pattern (67 bp):
GATAAAGATGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGATGATGAGAAAA
GT
Found at i:2099203 original size:122 final size:121
Alignment explanation
Indices: 2099011--2099304 Score: 480
Period size: 122 Copynumber: 2.4 Consensus size: 121
2099001 GCTCGAAGAT
*
2099011 AAAGGTGCCAATATGCTGATTCAAGGCCAACAATATTAGACTTAAAGATGATGATGAGAAAAGTG
1 AAAGGTGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGATGATGAGAAAAGTG
*
2099076 ATAAAGATGCCAATATATTGATTCATGGCCAACGATATTGGGCTTAAAGATGATGAT
66 ATAAAGATGCCAATATATTGATTCATGGCCAACGATATTGGGCTTAAAGATGA-GAA
*
2099133 GAAGGTGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGATGATGAGAAAAGTG
1 AAAGGTGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGATGATGAGAAAAGTG
*
2099198 ATAAAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCTTAAAGATGAGAA
66 ATAAAGATGCCAATATATTGATTCATGGCCAACGATATTGGGCTTAAAGATGAGAA
* * * * * *
2099254 AAAGGATGTCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATG
1 AAAGG-TGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATG
2099305 GAAAAGGTGC
Statistics
Matches: 160, Mismatches: 11, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
121 6 0.04
122 154 0.96
ACGTcount: A:0.38, C:0.13, G:0.23, T:0.26
Consensus pattern (121 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGATGATGAGAAAAGTG
ATAAAGATGCCAATATATTGATTCATGGCCAACGATATTGGGCTTAAAGATGAGAA
Found at i:2099427 original size:49 final size:49
Alignment explanation
Indices: 2099205--2099725 Score: 592
Period size: 49 Copynumber: 10.8 Consensus size: 49
2099195 GTGATAAAGA
* * * * *
2099205 TGCCAATATGTTGATTCATGGCCAACGATATTGGGCTTAAAGATGAGAAAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAT--G---AAGG
* * * *
2099259 ATGTCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGG
1 -TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAT-G--AAGG
2099312 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGAC-T---GA--AAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGG
* * *
2099355 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGA
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGG
*
2099404 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGG
* * * *
2099447 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGAAGA
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGG
* *
2099496 TGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAAGGTGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT-AAAGATGAAGG
* *
2099546 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGG
*
2099595 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGG
* * *
2099638 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGG
*
2099687 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGGCTTA
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTA
2099726 GAAGGGTTGC
Statistics
Matches: 407, Mismatches: 40, Indels: 44
0.83 0.08 0.09
Matches are distributed among these distances:
43 114 0.28
44 1 0.00
45 1 0.00
47 4 0.01
48 2 0.00
49 164 0.40
50 46 0.11
51 1 0.00
52 32 0.08
53 6 0.01
54 1 0.00
55 35 0.09
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.25
Consensus pattern (49 bp):
TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGG
Found at i:2099446 original size:92 final size:92
Alignment explanation
Indices: 2099254--2099730 Score: 711
Period size: 92 Copynumber: 5.1 Consensus size: 92
2099244 AAGATGAGAA
* *
2099254 AAAGGATGTCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGCCAAT
1 AAAGG-TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGCCAAT
* *
2099319 ATGCTGATTCAAGGCCAGCTATATTGGACTG
62 ATGCTGATTCAAGGCCAGCGATATTGGACTT
*
2099350 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
2099415 TGATTCAAGGCCAGCGATATTGGACTT
66 TGATTCAAGGCCAGCGATATTGGACTT
* *
2099442 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGAAGATGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
*
2099507 TGATTCAAGGCCAGCAATATTGGACTT
66 TGATTCAAGGCCAGCGATATTGGACTT
* * * *
2099534 AAAAGGTGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGAAGGTGCC
1 ---A----AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCC
2099599 AATATGCTGATTCAAGGCCAGCGATATTGGACTT
59 AATATGCTGATTCAAGGCCAGCGATATTGGACTT
*
2099633 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
* *
2099698 TGATTCAAGGCCAGCTATATTGGGCTT
66 TGATTCAAGGCCAGCGATATTGGACTT
2099725 AGAAGG
1 A-AAGG
2099731 GTTGCCACCG
Statistics
Matches: 352, Mismatches: 21, Indels: 19
0.90 0.05 0.05
Matches are distributed among these distances:
92 214 0.61
93 4 0.01
94 1 0.00
95 43 0.12
96 6 0.02
99 84 0.24
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (92 bp):
AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
TGATTCAAGGCCAGCGATATTGGACTT
Found at i:2099587 original size:191 final size:189
Alignment explanation
Indices: 2099254--2099730 Score: 748
Period size: 191 Copynumber: 2.5 Consensus size: 189
2099244 AAGATGAGAA
*
2099254 AAAGGATGTCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGCCAAT
1 AAAGG-TGCCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGAT-G--AAGGTGCCAAT
*
2099319 ATGCTGATTCAAGGCCAGCTATATTGGAC-T----GAAAGGTGCCAATGTGCTGATTCAAGGCCA
62 ATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGAAAGGTGCCAATATGCTGATTCAAGGCCA
*
2099379 GCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
127 GCGACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
*
2099442 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGAAGATGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGAAGGTGCCAATATGC
* *
2099507 TGATTCAAGGCCAGCAATATTGGACTTAAAAGGTGAAGGTGCCAATATGCTGATTCAAGGCCAGC
66 TGATTCAAGGCCAGCTATATTGGACTT-AAAGG-AAAGGTGCCAATATGCTGATTCAAGGCCAGC
* * *
2099572 GATATTGGACTTAAAGGTGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
129 GACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* *
2099633 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGAAGGTGCCAATATGC
*
2099698 TGATTCAAGGCCAGCTATATTGGGCTTAGAAGG
66 TGATTCAAGGCCAGCTATATTGGACTTA-AAGG
2099731 GTTGCCACCG
Statistics
Matches: 267, Mismatches: 14, Indels: 13
0.91 0.05 0.04
Matches are distributed among these distances:
184 38 0.14
185 1 0.00
186 1 0.00
187 43 0.16
188 5 0.02
190 2 0.01
191 177 0.66
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (189 bp):
AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGAAGGTGCCAATATGC
TGATTCAAGGCCAGCTATATTGGACTTAAAGGAAAGGTGCCAATATGCTGATTCAAGGCCAGCGA
CATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
Found at i:2099810 original size:32 final size:31
Alignment explanation
Indices: 2099718--2099820 Score: 145
Period size: 33 Copynumber: 3.3 Consensus size: 31
2099708 CCAGCTATAT
2099718 TGGGC-TTAGAAGGGTTGCCACCGACTTGTG
1 TGGGCTTTAGAAGGGTTGCCACCGACTTGTG
*
2099748 TGGGCTTTAGAGAGTGGTTGCCACCAACTTGTG
1 TGGGCTTTAGA-AG-GGTTGCCACCGACTTGTG
* *
2099781 TGGGCTTTAGGAAGAGTTGCCACCGACTTGTA
1 TGGGCTTTA-GAAGGGTTGCCACCGACTTGTG
2099813 TGGGCTTT
1 TGGGCTTT
2099821 GGGAAAGGAG
Statistics
Matches: 65, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
30 5 0.08
31 5 0.08
32 25 0.38
33 28 0.43
34 2 0.03
ACGTcount: A:0.17, C:0.18, G:0.34, T:0.30
Consensus pattern (31 bp):
TGGGCTTTAGAAGGGTTGCCACCGACTTGTG
Found at i:2099935 original size:71 final size:68
Alignment explanation
Indices: 2099831--2100748 Score: 1378
Period size: 71 Copynumber: 13.2 Consensus size: 68
2099821 GGGAAAGGAG
* * * *
2099831 AAAGATGCCACAGAGTTGTGGAC-TTAAAAGGAAAAAAGAGTGCCACGGAGTTGTGGGCTTT-AA
1 AAAGGTGCCACGGAGTTGTGGGCTTTAAAAAG-AAAAAG-GTGCCACGGAGTTGTGGGCTTTAAA
2099894 AAGAA
64 AAGAA
*
2099899 AAAGGTTCCACGGAGTTGTGGGCTTTAAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAA
1 AAAGGTGCCACGGAGTTGTGGGCTTTAAAAA--GAAAAAG-GTGCCACGGAGTTGTGGGCTTTAA
2099964 AAAGAA
63 AAAGAA
*
2099970 AAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGGGAAAAAGAATGCCACGGAGTTGTGGGCTTTAA
1 AAAGGTGCCACGGAGTTGTGGGCTTTAAAAA--GAAAAAG-GTGCCACGGAGTTGTGGGCTTTAA
2100035 AAAGAA
63 AAAGAA
* *
2100041 AAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACAGAGTTATGGGCTTTAAAAA
1 AAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAA
2100106 GGGAA
66 --GAA
*
2100111 AAAGAGTGCCACAGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAA
1 AAAG-GTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTT-AAA
2100176 AAGGAA
64 AA-GAA
2100182 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAA
1 AAAG-GTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAA
2100247 AGAA
65 AGAA
* * * * *
2100251 AAAGGTGCCACGGAGTTGTGGGC-TTAGAAGGAGAAAGGTGCCATGGAGTTGTGGACTTTAAAAA
1 AAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAA
2100315 GAA
66 GAA
* * *
2100318 AAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAAAAAGGTGCCACGGAGTTGTGGGC-TTAGAAG
1 AAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAA
*
2100382 GAG
66 GAA
*
2100385 AAAGGTGCCACGGAGTTGTGGACTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAA
1 AAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAA
2100450 GGAAA
66 -G-AA
*
2100455 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTATGGGCTTTAAAA
1 AAAG-GTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAA
2100520 AGAAAA
65 AG--AA
2100526 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAA
1 AAAG-GTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAA
2100591 AGGGAA
65 A--GAA
2100597 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAA
1 AAAG-GTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAA
2100662 AGAA
65 AGAA
* * * *
2100666 AAAGGTGCCACGGAGTTGTGGGC-TTAGAAGGAGAAAGGTGCCACGGAGTTGTGGACTTTAAAAA
1 AAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAA
2100730 GAA
66 GAA
2100733 AAAGGTGCCACGGAGT
1 AAAGGTGCCACGGAGT
2100749 CATGGACTTT
Statistics
Matches: 794, Mismatches: 40, Indels: 33
0.92 0.05 0.04
Matches are distributed among these distances:
67 180 0.23
68 113 0.14
69 28 0.04
70 47 0.06
71 420 0.53
72 5 0.01
73 1 0.00
ACGTcount: A:0.36, C:0.12, G:0.33, T:0.20
Consensus pattern (68 bp):
AAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAA
GAA
Found at i:2099952 original size:105 final size:102
Alignment explanation
Indices: 2099831--2100748 Score: 1387
Period size: 105 Copynumber: 8.8 Consensus size: 102
2099821 GGGAAAGGAG
* * *
2099831 AAAGATGCCACAGAGTTGTGGAC-TTAAAAGGAAAAAAGAGTGCCACGGAGTTGTGGGCTTT-AA
1 AAAGGTGCCACGGAGTTGTGGGCTTTAAAAGG-AAAAAG-GTGCCACGGAGTTGTGGGCTTTAAA
*
2099894 AAGAAAAAGGTTCCACGGAGTTGTGGGCTTTAAAAAGGGAA
64 AAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAA--GAA
*
2099935 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAA
1 AAAG-GTGCCACGGAGTTGTGGGCTTTAAAAGGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAA
*
2100000 AGGGAAAAAGAATGCCACGGAGTTGTGGGCTTTAAAAAGAA
65 A--GAAAAAG-GTGCCACGGAGTTGTGGGCTTTAAAAAGAA
* * *
2100041 AAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACAGAGTTATGGGCTTTAAAAA
1 AAAGGTGCCACGGAGTTGTGGGCTTTAAAAGGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAA
*
2100106 GGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTAAAAAGAA
66 --GAAAAAG-GTGCCACGGAGTTGTGGGCTTTAAAAAGAA
2100146 AAAGGTGCCACGGAGTTGTGGGCTTTAAAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAA
1 AAAGGTGCCACGGAGTTGTGGGCTTT--AAAAGGAAAAAG-GTGCCACGGAGTTGTGGGCTTTAA
2100211 AAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
63 AAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
* * * *
2100251 AAAGGTGCCACGGAGTTGTGGGC-TTAGAAGGAGAAAGGTGCCATGGAGTTGTGGACTTTAAAAA
1 AAAGGTGCCACGGAGTTGTGGGCTTTAAAAGGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAA
*
2100315 GAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAA
66 GAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
* * *
2100352 AAAGGTGCCACGGAGTTGTGGGC-TTAGAAGGAGAAAGGTGCCACGGAGTTGTGGACTTTAAAAA
1 AAAGGTGCCACGGAGTTGTGGGCTTTAAAAGGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAA
2100416 GAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGGAAA
66 GAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAA-G-AA
* *
2100455 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTATGGGCTTTAAAA
1 AAAG-GTGCCACGGAGTTGTGGGCTTTAAAAGGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAA
2100520 AGAAAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
65 AG--AAAAAG-GTGCCACGGAGTTGTGGGCTTTAAAAAGAA
2100561 AAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAA
1 AAAGGTGCCACGGAGTTGTGGGCTTT-AAAA-GGAAAAAG-GTGCCACGGAGTTGTGGGCTTTAA
2100626 AAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
63 AAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
* * *
2100666 AAAGGTGCCACGGAGTTGTGGGC-TTAGAAGGAGAAAGGTGCCACGGAGTTGTGGACTTTAAAAA
1 AAAGGTGCCACGGAGTTGTGGGCTTTAAAAGGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAA
2100730 GAAAAAGGTGCCACGGAGT
66 GAAAAAGGTGCCACGGAGT
2100749 CATGGACTTT
Statistics
Matches: 764, Mismatches: 31, Indels: 41
0.91 0.04 0.05
Matches are distributed among these distances:
101 202 0.26
102 18 0.02
103 9 0.01
104 49 0.06
105 313 0.41
106 37 0.05
107 32 0.04
108 104 0.14
ACGTcount: A:0.36, C:0.12, G:0.33, T:0.20
Consensus pattern (102 bp):
AAAGGTGCCACGGAGTTGTGGGCTTTAAAAGGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAA
GAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
Found at i:2100760 original size:34 final size:34
Alignment explanation
Indices: 2099831--2100748 Score: 1378
Period size: 34 Copynumber: 26.5 Consensus size: 34
2099821 GGGAAAGGAG
* * * *
2099831 AAAGATGCCACAGAGTTGTGGAC-TTAAAAGGAAA
1 AAAGGTGCCACGGAGTTGTGGGCTTTAAAAAG-AA
2099865 AAAGAGTGCCACGGAGTTGTGGGCTTT-AAAAGAA
1 AAAG-GTGCCACGGAGTTGTGGGCTTTAAAAAGAA
*
2099899 AAAGGTTCCACGGAGTTGTGGGCTTTAAAAAGGGAA
1 AAAGGTGCCACGGAGTTGTGGGCTTTAAAAA--GAA
2099935 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
1 AAAG-GTGCCACGGAGTTGTGGGCTTTAAAAAGAA
2099970 AAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGGGAA
1 AAAGGTGCCACGGAGTTGTGGGCTTTAAAAA--GAA
*
2100006 AAAGAATGCCACGGAGTTGTGGGCTTTAAAAAGAA
1 AAAG-GTGCCACGGAGTTGTGGGCTTTAAAAAGAA
2100041 AAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
1 AAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
* *
2100075 AAAGGTGCCACAGAGTTATGGGCTTTAAAAAGGGAA
1 AAAGGTGCCACGGAGTTGTGGGCTTTAAAAA--GAA
*
2100111 AAAGAGTGCCACAGAGTTGTGGGCTTTAAAAAGAA
1 AAAG-GTGCCACGGAGTTGTGGGCTTTAAAAAGAA
2100146 AAAGGTGCCACGGAGTTGTGGGCTTTAAAAAAGGAA
1 AAAGGTGCCACGGAGTTGTGGGCTTT-AAAAA-GAA
2100182 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
1 AAAG-GTGCCACGGAGTTGTGGGCTTTAAAAAGAA
2100217 AAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
1 AAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
* * *
2100251 AAAGGTGCCACGGAGTTGTGGGC-TTAGAAGGAG
1 AAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
* *
2100284 AAAGGTGCCATGGAGTTGTGGACTTTAAAAAGAA
1 AAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
*
2100318 AAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAA
1 AAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
* * *
2100352 AAAGGTGCCACGGAGTTGTGGGC-TTAGAAGGAG
1 AAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
*
2100385 AAAGGTGCCACGGAGTTGTGGACTTTAAAAAGAA
1 AAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
2100419 AAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGGAAA
1 AAAGGTGCCACGGAGTTGTGGGCTTTAAAAA-G-AA
2100455 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
1 AAAG-GTGCCACGGAGTTGTGGGCTTTAAAAAGAA
*
2100490 AAAGGTGCCACGGAGTTATGGGCTTTAAAAAGAAAA
1 AAAGGTGCCACGGAGTTGTGGGCTTTAAAAAG--AA
2100526 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
1 AAAG-GTGCCACGGAGTTGTGGGCTTTAAAAAGAA
2100561 AAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGGGAA
1 AAAGGTGCCACGGAGTTGTGGGCTTTAAAAA--GAA
2100597 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
1 AAAG-GTGCCACGGAGTTGTGGGCTTTAAAAAGAA
2100632 AAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
1 AAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
* * *
2100666 AAAGGTGCCACGGAGTTGTGGGC-TTAGAAGGAG
1 AAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
*
2100699 AAAGGTGCCACGGAGTTGTGGACTTTAAAAAGAA
1 AAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
2100733 AAAGGTGCCACGGAGT
1 AAAGGTGCCACGGAGT
2100749 CATGGACTTT
Statistics
Matches: 816, Mismatches: 41, Indels: 54
0.90 0.05 0.06
Matches are distributed among these distances:
33 106 0.13
34 401 0.49
35 73 0.09
36 55 0.07
37 181 0.22
ACGTcount: A:0.36, C:0.12, G:0.33, T:0.20
Consensus pattern (34 bp):
AAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAA
Found at i:2109018 original size:13 final size:13
Alignment explanation
Indices: 2109000--2109024 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2108990 CAAAGATCAG
2109000 TGTATCGATACAA
1 TGTATCGATACAA
2109013 TGTATCGATACA
1 TGTATCGATACA
2109025 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2109105 original size:13 final size:13
Alignment explanation
Indices: 2109087--2109111 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2109077 CAAAAACAAA
2109087 TGTATCGATACAT
1 TGTATCGATACAT
2109100 TGTATCGATACA
1 TGTATCGATACA
2109112 ACATTTCATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2111009 original size:19 final size:19
Alignment explanation
Indices: 2110985--2111024 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
2110975 TTAGGATAGG
2110985 TTCACCTATCTATGATCGT
1 TTCACCTATCTATGATCGT
2111004 TTCACCTATCTATGATCGT
1 TTCACCTATCTATGATCGT
2111023 TT
1 TT
2111025 TTAAGTCCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.20, C:0.25, G:0.10, T:0.45
Consensus pattern (19 bp):
TTCACCTATCTATGATCGT
Found at i:2113108 original size:13 final size:13
Alignment explanation
Indices: 2113090--2113114 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2113080 ATAATGCACA
2113090 GTATCGATACATT
1 GTATCGATACATT
2113103 GTATCGATACAT
1 GTATCGATACAT
2113115 GACCACTGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:2117047 original size:14 final size:14
Alignment explanation
Indices: 2117028--2117060 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
2117018 CATTTGGATG
2117028 TAAATGTTTTGTTT
1 TAAATGTTTTGTTT
2117042 TAAATGTTTTGTTT
1 TAAATGTTTTGTTT
2117056 TAAAT
1 TAAAT
2117061 AATGGAAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.12, T:0.61
Consensus pattern (14 bp):
TAAATGTTTTGTTT
Found at i:2121902 original size:13 final size:13
Alignment explanation
Indices: 2121884--2121908 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2121874 ATAATGCACA
2121884 GTATCGATACATT
1 GTATCGATACATT
2121897 GTATCGATACAT
1 GTATCGATACAT
2121909 GACCACTGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:2121905 original size:33 final size:31
Alignment explanation
Indices: 2121863--2121930 Score: 91
Period size: 33 Copynumber: 2.1 Consensus size: 31
2121853 CACCTTCAGA
*
2121863 TGTATCGATACATAATGCACAGTATCGATACAT
1 TGTATCGATACATAA-CCACAGTATCGATAC-T
* *
2121896 TGTATCGATACATGACCACTGTATCGATACT
1 TGTATCGATACATAACCACAGTATCGATACT
2121927 TGTA
1 TGTA
2121931 CTTGCAAAGA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
31 5 0.16
32 13 0.41
33 14 0.44
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.32
Consensus pattern (31 bp):
TGTATCGATACATAACCACAGTATCGATACT
Found at i:2122021 original size:13 final size:13
Alignment explanation
Indices: 2122003--2122028 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2121993 ACATACAAGA
2122003 TGTATTGATACAT
1 TGTATTGATACAT
2122016 TGTATTGATACAT
1 TGTATTGATACAT
2122029 GACCAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.15, T:0.46
Consensus pattern (13 bp):
TGTATTGATACAT
Found at i:2122046 original size:33 final size:32
Alignment explanation
Indices: 2121983--2122050 Score: 93
Period size: 33 Copynumber: 2.1 Consensus size: 32
2121973 CCTTGACTAT
*
2121983 TTGTATCGATACATACAAGATGTATTGATACA
1 TTGTATCGATACATACAAGATGTATCGATACA
*
2122015 TTGTATTGATACATGACCAA-ATGTATCGATACA
1 TTGTATCGATACAT-A-CAAGATGTATCGATACA
2122048 TTG
1 TTG
2122051 GCTTGTAACG
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
32 13 0.41
33 16 0.50
34 3 0.09
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.35
Consensus pattern (32 bp):
TTGTATCGATACATACAAGATGTATCGATACA
Found at i:2123688 original size:10 final size:10
Alignment explanation
Indices: 2123668--2123703 Score: 56
Period size: 10 Copynumber: 3.6 Consensus size: 10
2123658 ATAAATAAAT
2123668 TTTTATTTTTA
1 TTTT-TTTTTA
2123679 TTTTTTTTTA
1 TTTTTTTTTA
2123689 -TTTTTTTTA
1 TTTTTTTTTA
2123698 TTTTTT
1 TTTTTT
2123704 AACATTAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
9 9 0.38
10 11 0.46
11 4 0.17
ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89
Consensus pattern (10 bp):
TTTTTTTTTA
Found at i:2123688 original size:16 final size:16
Alignment explanation
Indices: 2123667--2123704 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
2123657 AATAAATAAA
2123667 TTTTTATTTTTATTT-T
1 TTTTTATTTTT-TTTAT
2123683 TTTTTATTTTTTTTAT
1 TTTTTATTTTTTTTAT
2123699 TTTTTA
1 TTTTTA
2123705 ACATTAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 3 0.14
16 18 0.86
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (16 bp):
TTTTTATTTTTTTTAT
Found at i:2123692 original size:9 final size:9
Alignment explanation
Indices: 2123673--2123703 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
2123663 TAAATTTTTA
2123673 TTTTTATTTT
1 TTTTTA-TTT
2123683 TTTTTATTT
1 TTTTTATTT
2123692 TTTTTATTT
1 TTTTTATTT
2123701 TTT
1 TTT
2123704 AACATTAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 15 0.71
10 6 0.29
ACGTcount: A:0.10, C:0.00, G:0.00, T:0.90
Consensus pattern (9 bp):
TTTTTATTT
Found at i:2124541 original size:13 final size:13
Alignment explanation
Indices: 2124523--2124548 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2124513 CAATTTTTGG
2124523 TGTATCGATACAT
1 TGTATCGATACAT
2124536 TGTATCGATACAT
1 TGTATCGATACAT
2124549 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2124560 original size:32 final size:33
Alignment explanation
Indices: 2124503--2124566 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
2124493 TACAAGCCAA
**
2124503 TGTATCGATACAATTTTTGGTGTATCGATACAT
1 TGTATCGATACAATACTTGGTGTATCGATACAT
2124536 TGTATCGATAC-ATACTTGGTGTATCGATACA
1 TGTATCGATACAATACTTGGTGTATCGATACA
2124567 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.62
33 11 0.38
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.39
Consensus pattern (33 bp):
TGTATCGATACAATACTTGGTGTATCGATACAT
Found at i:2124573 original size:19 final size:18
Alignment explanation
Indices: 2124503--2124573 Score: 62
Period size: 19 Copynumber: 4.0 Consensus size: 18
2124493 TACAAGCCAA
2124503 TGTATCGATACAATTTTTGG
1 TGTATCGATACAA--TTTGG
2124523 TGTATCGATAC-A--T--
1 TGTATCGATACAATTTGG
*
2124536 TGTATCGATACATACTTGG
1 TGTATCGATACA-ATTTGG
2124555 TGTATCGATACAAGTTTGG
1 TGTATCGATACAA-TTTGG
2124574 CTACTGCCAA
Statistics
Matches: 43, Mismatches: 1, Indels: 15
0.73 0.02 0.25
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 1 0.02
18 1 0.02
19 17 0.40
20 11 0.26
ACGTcount: A:0.27, C:0.13, G:0.21, T:0.39
Consensus pattern (18 bp):
TGTATCGATACAATTTGG
Found at i:2125266 original size:21 final size:21
Alignment explanation
Indices: 2125225--2125268 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
2125215 CTCTCCTTTA
* *
2125225 TCTCCCCCGTTTATTAATAAT
1 TCTCCCCCGTTAATGAATAAT
2125246 TCTCCCCC-TTAATGAAGTAAT
1 TCTCCCCCGTTAATGAA-TAAT
2125267 TC
1 TC
2125269 ATATCAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.25, C:0.30, G:0.07, T:0.39
Consensus pattern (21 bp):
TCTCCCCCGTTAATGAATAAT
Found at i:2126620 original size:21 final size:20
Alignment explanation
Indices: 2126591--2126633 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
2126581 GGCTAGTATG
* *
2126591 GGGACTGCCCGGTTGCGACCT
1 GGGACTG-CCGGTCGCAACCT
*
2126612 GGGAGTGCCGGTCGCAACCT
1 GGGACTGCCGGTCGCAACCT
2126632 GG
1 GG
2126634 TGGTGCTGCC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.12, C:0.30, G:0.42, T:0.16
Consensus pattern (20 bp):
GGGACTGCCGGTCGCAACCT
Found at i:2127084 original size:13 final size:13
Alignment explanation
Indices: 2127066--2127090 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2127056 ATAATCCCGC
2127066 TGTATCGATACAT
1 TGTATCGATACAT
2127079 TGTATCGATACA
1 TGTATCGATACA
2127091 AAGAAAAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2131028 original size:21 final size:21
Alignment explanation
Indices: 2130999--2131043 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
2130989 AAGTTTTTAT
*
2130999 TTTTCTTAGCTAA-TTCATTA
1 TTTTCTTAGCCAAGTTCATTA
*
2131019 TTTTCATTAGCCAAGTTCTTTA
1 TTTTC-TTAGCCAAGTTCATTA
2131041 TTT
1 TTT
2131044 CAACTTGTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 7 0.33
22 9 0.43
ACGTcount: A:0.22, C:0.16, G:0.07, T:0.56
Consensus pattern (21 bp):
TTTTCTTAGCCAAGTTCATTA
Found at i:2131043 original size:22 final size:21
Alignment explanation
Indices: 2130988--2131043 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
2130978 ATGAATCATG
2130988 CAAGTT-TTTATTTTTCTTAGC
1 CAAGTTCTTTA-TTTTCTTAGC
* *
2131009 TAA-TTCATTATTTTCATTAGC
1 CAAGTTCTTTATTTTC-TTAGC
2131030 CAAGTTCTTTATTT
1 CAAGTTCTTTATTT
2131044 CAACTTGTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
20 7 0.25
21 12 0.43
22 9 0.32
ACGTcount: A:0.23, C:0.14, G:0.07, T:0.55
Consensus pattern (21 bp):
CAAGTTCTTTATTTTCTTAGC
Found at i:2133279 original size:13 final size:13
Alignment explanation
Indices: 2133261--2133286 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2133251 CAATTTTTGG
2133261 TGTATCGATACAT
1 TGTATCGATACAT
2133274 TGTATCGATACAT
1 TGTATCGATACAT
2133287 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2133298 original size:32 final size:33
Alignment explanation
Indices: 2133241--2133304 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
2133231 TACAAGCCAA
**
2133241 TGTATCGATACAATTTTTGGTGTATCGATACAT
1 TGTATCGATACAATACTTGGTGTATCGATACAT
2133274 TGTATCGATAC-ATACTTGGTGTATCGATACA
1 TGTATCGATACAATACTTGGTGTATCGATACA
2133305 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.62
33 11 0.38
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.39
Consensus pattern (33 bp):
TGTATCGATACAATACTTGGTGTATCGATACAT
Found at i:2133311 original size:19 final size:18
Alignment explanation
Indices: 2133241--2133311 Score: 62
Period size: 19 Copynumber: 4.0 Consensus size: 18
2133231 TACAAGCCAA
2133241 TGTATCGATACAATTTTTGG
1 TGTATCGATACAA--TTTGG
2133261 TGTATCGATAC-A--T--
1 TGTATCGATACAATTTGG
*
2133274 TGTATCGATACATACTTGG
1 TGTATCGATACA-ATTTGG
2133293 TGTATCGATACAAGTTTGG
1 TGTATCGATACAA-TTTGG
2133312 CTACTGCCAA
Statistics
Matches: 43, Mismatches: 1, Indels: 15
0.73 0.02 0.25
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 1 0.02
18 1 0.02
19 17 0.40
20 11 0.26
ACGTcount: A:0.27, C:0.13, G:0.21, T:0.39
Consensus pattern (18 bp):
TGTATCGATACAATTTGG
Found at i:2134794 original size:16 final size:16
Alignment explanation
Indices: 2134775--2134813 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
2134765 ACATTTTTAG
*
2134775 GTTCAGGCCTTTTCAA
1 GTTCAGACCTTTTCAA
*
2134791 GTTCAAACCTTTTCAA
1 GTTCAGACCTTTTCAA
2134807 GTTCAGA
1 GTTCAGA
2134814 TTTTTTCGAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (16 bp):
GTTCAGACCTTTTCAA
Found at i:2136334 original size:12 final size:12
Alignment explanation
Indices: 2136317--2136342 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
2136307 GACAATTTGA
2136317 AGCCTAGCTAGT
1 AGCCTAGCTAGT
2136329 AGCCTAGCTAGT
1 AGCCTAGCTAGT
2136341 AG
1 AG
2136343 GTGTAGACAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (12 bp):
AGCCTAGCTAGT
Found at i:2136595 original size:33 final size:33
Alignment explanation
Indices: 2136558--2136624 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
2136548 TTCAACGATT
2136558 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
2136591 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
2136624 T
1 T
2136625 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:2136596 original size:13 final size:13
Alignment explanation
Indices: 2136578--2136602 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2136568 CATAAAATGT
2136578 TGTATCGATACAA
1 TGTATCGATACAA
2136591 TGTATCGATACA
1 TGTATCGATACA
2136603 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2136683 original size:13 final size:13
Alignment explanation
Indices: 2136665--2136689 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2136655 ATTACTCAAA
2136665 TGTATCGATACAT
1 TGTATCGATACAT
2136678 TGTATCGATACA
1 TGTATCGATACA
2136690 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2136791 original size:52 final size:52
Alignment explanation
Indices: 2136698--2136825 Score: 224
Period size: 52 Copynumber: 2.5 Consensus size: 52
2136688 CACTGATCTT
*
2136698 TGTATCGATACATGCAGGC-AATTTGCCCAGATGTATCGATACA-TTTTAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATT-AAA
2136749 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
2136801 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
2136826 TCATATTTCG
Statistics
Matches: 74, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
51 19 0.26
52 52 0.70
53 3 0.04
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
Found at i:2140806 original size:22 final size:22
Alignment explanation
Indices: 2140779--2140821 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
2140769 AAAGCTCAGA
2140779 ATATAATTTAATTTTTAATAAT
1 ATATAATTTAATTTTTAATAAT
* *
2140801 ATATAATTTACTTTTTGATAA
1 ATATAATTTAATTTTTAATAA
2140822 ATTACTATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.53
Consensus pattern (22 bp):
ATATAATTTAATTTTTAATAAT
Found at i:2141100 original size:13 final size:14
Alignment explanation
Indices: 2141071--2141102 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
2141061 GTTCGAGCAA
2141071 TTTTAAGTTTAATT
1 TTTTAAGTTTAATT
*
2141085 TTTTAGGTTTAATT
1 TTTTAAGTTTAATT
2141099 TTTT
1 TTTT
2141103 TGAATTTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.22, C:0.00, G:0.09, T:0.69
Consensus pattern (14 bp):
TTTTAAGTTTAATT
Found at i:2142070 original size:22 final size:23
Alignment explanation
Indices: 2142045--2142108 Score: 69
Period size: 23 Copynumber: 2.8 Consensus size: 23
2142035 ACGTGCGTAT
2142045 ATATATTT-TATATTTAAATTTA
1 ATATATTTATATATTTAAATTTA
* *
2142067 ATATATTTATGTATTTAATTTTA
1 ATATATTTATATATTTAAATTTA
* *
2142090 TTTATATTAATAT-TTTAAA
1 -ATATATTTATATATTTAAA
2142109 GTAAATTTTG
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
22 8 0.24
23 17 0.50
24 9 0.26
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (23 bp):
ATATATTTATATATTTAAATTTA
Found at i:2142070 original size:24 final size:23
Alignment explanation
Indices: 2142043--2142104 Score: 65
Period size: 22 Copynumber: 2.7 Consensus size: 23
2142033 TCACGTGCGT
*
2142043 ATATATATTTTATATTTAAATTTA
1 ATATATATTATATATTT-AATTTA
* *
2142067 ATATAT-TTATGTATTTAATTTT
1 ATATATATTATATATTTAATTTA
*
2142089 ATTTATATTA-ATATTT
1 ATATATATTATATATTT
2142105 TAAAGTAAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
22 15 0.47
23 11 0.34
24 6 0.19
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (23 bp):
ATATATATTATATATTTAATTTA
Found at i:2142455 original size:16 final size:16
Alignment explanation
Indices: 2142436--2142517 Score: 114
Period size: 16 Copynumber: 5.1 Consensus size: 16
2142426 AATTAATTTA
2142436 TTAAATTATTTTAAAT
1 TTAAATTATTTTAAAT
2142452 TTAAATTA-TTTAAAT
1 TTAAATTATTTTAAAT
* *
2142467 TTAAATTTTTTTATAT
1 TTAAATTATTTTAAAT
2142483 TTAAATTATTTTAAAAT
1 TTAAATTATTTT-AAAT
2142500 TTAAA-TATATTTAAAT
1 TTAAATTAT-TTTAAAT
2142516 TT
1 TT
2142518 TTGAGATAAA
Statistics
Matches: 59, Mismatches: 4, Indels: 6
0.86 0.06 0.09
Matches are distributed among these distances:
15 14 0.24
16 34 0.58
17 11 0.19
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (16 bp):
TTAAATTATTTTAAAT
Found at i:2142479 original size:31 final size:33
Alignment explanation
Indices: 2142436--2142517 Score: 114
Period size: 31 Copynumber: 2.5 Consensus size: 33
2142426 AATTAATTTA
*
2142436 TTAAATTATTTTAAATTTAAATTA-TTT-AAAT
1 TTAAATTTTTTTAAATTTAAATTATTTTAAAAT
*
2142467 TTAAATTTTTTTATATTTAAATTATTTTAAAAT
1 TTAAATTTTTTTAAATTTAAATTATTTTAAAAT
* *
2142500 TTAAATATATTTAAATTT
1 TTAAATTTTTTTAAATTT
2142518 TTGAGATAAA
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
31 22 0.50
32 3 0.07
33 19 0.43
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (33 bp):
TTAAATTTTTTTAAATTTAAATTATTTTAAAAT
Found at i:2143787 original size:18 final size:18
Alignment explanation
Indices: 2143764--2143806 Score: 77
Period size: 18 Copynumber: 2.3 Consensus size: 18
2143754 TTATAATCAA
2143764 TTATTTAACAAATTAATT
1 TTATTTAACAAATTAATT
2143782 TTATTTAACAAATTAATT
1 TTATTTAACAAATTAATT
2143800 TATATTT
1 T-TATTT
2143807 TTTTGTTAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 19 0.79
19 5 0.21
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (18 bp):
TTATTTAACAAATTAATT
Found at i:2144634 original size:49 final size:49
Alignment explanation
Indices: 2144581--2144684 Score: 140
Period size: 49 Copynumber: 2.1 Consensus size: 49
2144571 TCATTTAATT
* *
2144581 TTCAAAGATTTTGAAGAACAATAAGTAAA-TCCTTCAATACTAAT-TCAAA
1 TTCAAAGATTTTCAAGAACAATAAGTAAACT-CGTCAATACTAATCT-AAA
* *
2144630 TTCAAGGATTTTCAAGAACAATAAGTAAACTCGTCAATTCTAATCTAAA
1 TTCAAAGATTTTCAAGAACAATAAGTAAACTCGTCAATACTAATCTAAA
2144679 TTCAAA
1 TTCAAA
2144685 AAATTCAAGT
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
49 46 0.96
50 2 0.04
ACGTcount: A:0.45, C:0.15, G:0.09, T:0.31
Consensus pattern (49 bp):
TTCAAAGATTTTCAAGAACAATAAGTAAACTCGTCAATACTAATCTAAA
Found at i:2145570 original size:16 final size:16
Alignment explanation
Indices: 2145501--2145570 Score: 56
Period size: 16 Copynumber: 4.4 Consensus size: 16
2145491 CAATTTGAAC
*
2145501 TTAAAATAA-CCAAAA
1 TTAAAATAATTCAAAA
2145516 TTTAAAATAA-T-ATAAA
1 -TTAAAATAATTCA-AAA
2145532 TATAAAATAATTCAAAA
1 T-TAAAATAATTCAAAA
* * *
2145549 TCAAAATATTTCAAAC
1 TTAAAATAATTCAAAA
2145565 TTAAAA
1 TTAAAA
2145571 ATAACAAAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 8
0.78 0.09 0.14
Matches are distributed among these distances:
15 2 0.04
16 37 0.82
17 5 0.11
18 1 0.02
ACGTcount: A:0.61, C:0.09, G:0.00, T:0.30
Consensus pattern (16 bp):
TTAAAATAATTCAAAA
Found at i:2157626 original size:13 final size:13
Alignment explanation
Indices: 2157608--2157633 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2157598 ACAAAGATCG
2157608 ATGTATCGATACA
1 ATGTATCGATACA
2157621 ATGTATCGATACA
1 ATGTATCGATACA
2157634 TTTCCTTGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2157699 original size:32 final size:32
Alignment explanation
Indices: 2157657--2157729 Score: 128
Period size: 32 Copynumber: 2.3 Consensus size: 32
2157647 AGCTTCGTAG
2157657 CGATACATTGTATCGATACAAAACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
* *
2157689 TGATACATTGTATCGATACAACACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
2157721 CGATACATT
1 CGATACATT
2157730 TTCTATTTGT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.36
Consensus pattern (32 bp):
CGATACATTGTATCGATACAAAACTTATGTAT
Found at i:2157721 original size:19 final size:19
Alignment explanation
Indices: 2157665--2157727 Score: 66
Period size: 19 Copynumber: 3.6 Consensus size: 19
2157655 AGCGATACAT
*
2157665 TGTATCGATACAAAACTTA
1 TGTATCGATACAACACTTA
*
2157684 TGTATTGAT---ACA--T-
1 TGTATCGATACAACACTTA
2157697 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
2157716 TGTATCGATACA
1 TGTATCGATACA
2157728 TTTTCTATTT
Statistics
Matches: 35, Mismatches: 3, Indels: 12
0.70 0.06 0.24
Matches are distributed among these distances:
13 8 0.23
14 1 0.03
16 5 0.14
18 1 0.03
19 20 0.57
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (19 bp):
TGTATCGATACAACACTTA
Found at i:2159698 original size:101 final size:100
Alignment explanation
Indices: 2159516--2159715 Score: 339
Period size: 101 Copynumber: 2.0 Consensus size: 100
2159506 AAATAGAAAG
*
2159516 AAACAATTGCAAAACCCAAAAGAACACATGTTCAAGTTGCAAAAAGGAAAACTTTAATGTCCTTG
1 AAACAATTGCAAAACCCAAAAGAACACATGTTCAAATTGCAAAAAGGAAAACTTTAATGTCCTTG
*
2159581 GTGCAACGTGCAAGAATATATATATATATATATAT
66 GTGCAAAGTGCAAGAATATATATATATATATATAT
*
2159616 AAACAATTGC-AAACGTCAAAAGAACACATGTTCAAATTGCAAAAAAGGAAAACTTTAATGTCCT
1 AAACAATTGCAAAAC-CCAAAAGAACACATGTTCAAATTGC-AAAAAGGAAAACTTTAATGTCCT
*
2159680 TGGTGCAAAGTGCAAGAATATATATGTATATATATA
64 TGGTGCAAAGTGCAAGAATATATATATATATATATA
2159716 ATGTCCTTGG
Statistics
Matches: 94, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
99 4 0.04
100 33 0.35
101 57 0.61
ACGTcount: A:0.46, C:0.14, G:0.14, T:0.26
Consensus pattern (100 bp):
AAACAATTGCAAAACCCAAAAGAACACATGTTCAAATTGCAAAAAGGAAAACTTTAATGTCCTTG
GTGCAAAGTGCAAGAATATATATATATATATATAT
Found at i:2159736 original size:43 final size:43
Alignment explanation
Indices: 2159671--2159757 Score: 140
Period size: 43 Copynumber: 2.0 Consensus size: 43
2159661 AGGAAAACTT
*
2159671 TAATGTCCTTGGTGCAAAGTGCAAGA-ATATATATGTATATATA
1 TAATGTCCTTGGTGCAAAGTGCAA-ATATATATATATATATATA
*
2159714 TAATGTCCTTGGTGCAACGTGCAAATATATATATATATATATA
1 TAATGTCCTTGGTGCAAAGTGCAAATATATATATATATATATA
2159757 T
1 T
2159758 TTATTTGAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
42 1 0.02
43 40 0.98
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.37
Consensus pattern (43 bp):
TAATGTCCTTGGTGCAAAGTGCAAATATATATATATATATATA
Found at i:2163035 original size:30 final size:30
Alignment explanation
Indices: 2162999--2163059 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
2162989 ATGTGGAAAG
2162999 TATGTCTATAGGACTCTTGAAGCCTAATGC
1 TATGTCTATAGGACTCTTGAAGCCTAATGC
2163029 TATGTCTATAGGACTCTTGAAGCCTAATGC
1 TATGTCTATAGGACTCTTGAAGCCTAATGC
2163059 T
1 T
2163060 TTTGATGGTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (30 bp):
TATGTCTATAGGACTCTTGAAGCCTAATGC
Found at i:2165606 original size:2 final size:2
Alignment explanation
Indices: 2165599--2165645 Score: 87
Period size: 2 Copynumber: 24.0 Consensus size: 2
2165589 AGCTCCTCAC
2165599 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2165641 A- AT AT
1 AT AT AT
2165646 TTAAGGTACT
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 43 0.98
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:2166381 original size:20 final size:21
Alignment explanation
Indices: 2166344--2166382 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
2166334 AATTGATATC
**
2166344 AAAATATTTTTTTATTAATTA
1 AAAATATTTTAATATTAATTA
2166365 AAAATATTTTAAT-TTAAT
1 AAAATATTTTAATATTAAT
2166383 GAAGTTAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (21 bp):
AAAATATTTTAATATTAATTA
Found at i:2166727 original size:13 final size:13
Alignment explanation
Indices: 2166685--2166732 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
2166675 TTTAATTTTT
*
2166685 AAATAAATTATCA
1 AAATAAATTATTA
2166698 AAATAATATTAATTTA
1 AAATAA-ATT-A-TTA
2166714 AAATAAATTATTA
1 AAATAAATTATTA
*
2166727 AGATAA
1 AAATAA
2166733 TATTGTTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
13 14 0.47
14 4 0.13
15 4 0.13
16 8 0.27
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.35
Consensus pattern (13 bp):
AAATAAATTATTA
Found at i:2166732 original size:29 final size:30
Alignment explanation
Indices: 2166676--2166736 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 30
2166666 CAAAGTGTCT
*
2166676 TTAATTTTTAAATAAATTATCAAAATAATA
1 TTAATTTTAAAATAAATTATCAAAATAATA
* *
2166706 TTAA-TTTAAAATAAATTATTAAGATAATA
1 TTAATTTTAAAATAAATTATCAAAATAATA
2166735 TT
1 TT
2166737 GTTTTGACTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
29 24 0.86
30 4 0.14
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (30 bp):
TTAATTTTAAAATAAATTATCAAAATAATA
Found at i:2167085 original size:13 final size:14
Alignment explanation
Indices: 2167058--2167090 Score: 59
Period size: 13 Copynumber: 2.4 Consensus size: 14
2167048 GTGTAATTAT
2167058 TTTAAAATATTTAA
1 TTTAAAATATTTAA
2167072 TTTAAAAT-TTTAA
1 TTTAAAATATTTAA
2167085 TTTAAA
1 TTTAAA
2167091 TTGTAATCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
TTTAAAATATTTAA
Found at i:2167142 original size:39 final size:36
Alignment explanation
Indices: 2167072--2167179 Score: 118
Period size: 31 Copynumber: 3.0 Consensus size: 36
2167062 AAATATTTAA
* *
2167072 TTTAAAATTTTAATTTAAATTGTAATCATCTAATTATT
1 TTTAAAA-TTTAAATTAAATTGTAATAATCTAATTA-T
2167110 TTTAAAATTTAAATTAAGGATTGTAATAATCTAATTAT
1 TTTAAAATTTAAATTAA--ATTGTAATAATCTAATTAT
*
2167148 TTTAAAATTT---TT--ATTGTAATCATCTAATTAT
1 TTTAAAATTTAAATTAAATTGTAATAATCTAATTAT
2167179 T
1 T
2167180 AAGAGTTATA
Statistics
Matches: 65, Mismatches: 3, Indels: 11
0.82 0.04 0.14
Matches are distributed among these distances:
31 19 0.29
35 2 0.03
37 9 0.14
38 18 0.28
39 17 0.26
ACGTcount: A:0.40, C:0.05, G:0.05, T:0.51
Consensus pattern (36 bp):
TTTAAAATTTAAATTAAATTGTAATAATCTAATTAT
Found at i:2167331 original size:31 final size:29
Alignment explanation
Indices: 2167286--2167451 Score: 123
Period size: 30 Copynumber: 5.7 Consensus size: 29
2167276 GATTAAAATT
2167286 TTTAAAA-AATTAGATAATTATAACTTTTAA
1 TTTAAAATAATTAGATAATTATAA--TTTAA
* * *
2167316 TTTAAAATAATTAG---ATGATAA-TGACC
1 TTTAAAATAATTAGATAATTATAATTTA-A
* * *
2167342 CTT--AATAATTAGATTATTACAATTTAA
1 TTTAAAATAATTAGATAATTATAATTTAA
2167369 TTTTAAAATAATTAGATAATTATAATTTAA
1 -TTTAAAATAATTAGATAATTATAATTTAA
* *
2167399 TTTAAAAAATAATTAAATTATTATAATTTAAA
1 TTT--AAAATAATTAGATAATTATAATTT-AA
*
2167431 TTTTAAAATAA-TAAATAATTA
1 -TTTAAAATAATTAGATAATTA
2167452 CAACTCTTAT
Statistics
Matches: 109, Mismatches: 14, Indels: 26
0.73 0.09 0.17
Matches are distributed among these distances:
24 9 0.08
25 2 0.02
26 2 0.02
27 5 0.05
28 10 0.09
29 3 0.03
30 38 0.35
31 35 0.32
32 2 0.02
33 3 0.03
ACGTcount: A:0.51, C:0.03, G:0.04, T:0.43
Consensus pattern (29 bp):
TTTAAAATAATTAGATAATTATAATTTAA
Found at i:2169638 original size:156 final size:154
Alignment explanation
Indices: 2169139--2169972 Score: 422
Period size: 154 Copynumber: 5.5 Consensus size: 154
2169129 CGGTTCCAAA
* * * ** ** ** * *
2169139 GAAAATTACTAGAATACCCCTAG-GTATACCTTTGACATGAAAGTATCCCGATAACCCTAAAAGA
1 GAAAAATACTAGAATACCCTTAGAGTATATCTTCCATGTGAAAGTATCTTGATAATCCTAAAGGA
* ** * * * * * ** * *
2169203 CACAACAATGATCTAAAAGGATAAACCTATCTTAAAAACATACTTTTGGCATAAAAGGA-TATGG
66 CACAAAAAAAATATAAAAGGATGAACCTATCCTAAAAGCATACCTTTGGCATAAAACAACCA-AG
* * * *
2169267 TGATTA-CTTAGAACTCAACTC-AAG
130 TGACTACCTAAG-ACTCGATTCTAAG
* * * * ** * * *
2169291 AGAAAATTACTAAAATGCCCTTA-AGGTATACCTTTGATGTGAAAGTATCTCGATAAACCTAATG
1 -GAAAAATACTAGAATACCCTTAGA-GTATATCTTCCATGTGAAAGTATCTTGATAATCCTAAAG
* * ** * ** *** *
2169355 GACACGAGAATGATATAAGAGGACAAACCTATCCTAAAAGCATA-CTTTGGCATAAAATGGCCTA
64 GACACAAAAAAAATATAAAAGGATGAACCTATCCTAAAAGCATACCTTTGGCATAAAACAACCAA
* * *
2169419 GTGATTACCTAGGACTTGATTC-AAG
129 GTGACTACCTAAGACTCGATTCTAAG
* * * * * * *
2169444 G--AAATGGCCAAAATACCATTAGAGTATATCTTCCATGTGAAAGTATTTTGGTAA-CTCTAATG
1 GAAAAAT-ACTAGAATACCCTTAGAGTATATCTTCCATGTGAAAGTATCTTGATAATC-CTAAAG
* * * * *
2169506 GATACAAAAAAAATCATAAAATGATGAATCTATCCTAAATGTATACCTTTGGCATAAAAGCAACC
64 GACACAAAAAAAAT-ATAAAAGGATGAACCTATCCTAAAAGCATACCTTTGGCATAAAA-CAACC
* * *
2169571 TAGTGACTACTTAAGACTTGACTT-T-AG
127 AAGTGACTACCTAAGACTCGA-TTCTAAG
* * **
2169598 TGAAAATTACTAGAATACCCTTAGGGTATATCTTGGATGTGAAAGTATCTTGATAATCCTAAAGG
1 -GAAAAATACTAGAATACCCTTAGAGTATATCTTCCATGTGAAAGTATCTTGATAATCCTAAAGG
* ** * * *
2169663 ACACACAAATGATATAAAAGGATGAACCTATCCTAAAAGCATACTTTTGGTATAAAACGACCAAG
65 ACACAAAAAAAATATAAAAGGATGAACCTATCCTAAAAGCATACCTTTGGCATAAAACAACCAAG
* *
2169728 TGATTACCTAGGACTCGATTCTAAG
130 TGACTACCTAAGACTCGATTCTAAG
* * * * * *
2169753 GAAAAATACTAGAATACCC----A-TAGA-CGTTCGACGTGAAAGTATC-CGGTAA-CCTTAAAA
1 GAAAAATACTAGAATACCCTTAGAGTATATC-TTCCATGTGAAAGTATCTTGATAATCC-TAAAG
* * * * * *
2169810 GACAC-AAAAAAATCCTAAAAGAACGAACCTATCCTAAATGCATACTTTTGGCATAAAAGCGACC
64 GACACAAAAAAAAT-ATAAAAGGATGAACCTATCCTAAAAGCATACCTTTGGCATAAAA-CAACC
* * *
2169874 AGGTGACTACCTAAGATTC-AATCTAA-
127 AAGTGACTACCTAAGACTCGATTCTAAG
* * * * ** * * *
2169900 GAAAAATTACTAAAATGCTCTTGGAGTATA-CTTTTGACGTGAAAGTATTCTAG-TAACCCTAAA
1 GAAAAA-TACTAGAATACCCTTAGAGTATATC-TTCCATGTGAAAGTA-TCTTGATAATCCTAAA
*
2169963 GGAAACAAAA
63 GGACACAAAA
2169973 TTAATATATA
Statistics
Matches: 536, Mismatches: 113, Indels: 62
0.75 0.16 0.09
Matches are distributed among these distances:
147 13 0.02
148 69 0.13
149 38 0.07
150 4 0.01
151 51 0.10
152 26 0.05
153 81 0.15
154 147 0.27
155 49 0.09
156 54 0.10
157 4 0.01
ACGTcount: A:0.41, C:0.17, G:0.16, T:0.26
Consensus pattern (154 bp):
GAAAAATACTAGAATACCCTTAGAGTATATCTTCCATGTGAAAGTATCTTGATAATCCTAAAGGA
CACAAAAAAAATATAAAAGGATGAACCTATCCTAAAAGCATACCTTTGGCATAAAACAACCAAGT
GACTACCTAAGACTCGATTCTAAG
Found at i:2173306 original size:283 final size:283
Alignment explanation
Indices: 2172799--2173367 Score: 883
Period size: 283 Copynumber: 2.0 Consensus size: 283
2172789 TCATGCCAAT
*
2172799 CAAGGTTTTTACTCAAAACAAGACACAAACACTTTAGAAACAAGTGCAAGGTCATTTGAGTTGAA
1 CAAGGTTTTGACTCAAAACAAGACACAAACACTTTAGAAACAAGTGCAAGGTCATTTGAGTTGAA
*
2172864 AAATCGAAAGTTTAGACATCATTTAATCAAGATTCCAGACATGAAAATTAAATTTACCCCAATAT
66 AAATCAAAAGTTTAGACATCATTTAATCAAGATTCCAGACATGAAAATTAAATTTACCCCAATAT
* * *** *
2172929 TGTAATGTTTGTTTAGTAAAAACCTTAAGCTCGTGCTAATCTTTATTGATTGAGGCTAACATACT
131 TGTAATGTTTATTTAGTAAAAACCTTAAGCTCATGCTAATCCCCATTGATTGAGGCTAAAATACT
* *
2172994 TAACTTCGGGAAGCTATGAAAAGTCAATTTTTTTAGAGACAAGCAAGTATGCATTTTGGACAAGG
196 TAACTTCGAGAAGCTATGAAAAATCAATTTTTTTAGAGACAAGCAAGTATGCATTTTGGACAAGG
2173059 AAAACATGATGAACTTAGGAA-AA
261 AAAACATGATGAACTTA-GAAGAA
* * * *
2173082 CAAGGTTTTGACTCAAAACAAGGCACAAACACTTTGGAAACAAGTGCAAGGTTATTTTAGTTGAA
1 CAAGGTTTTGACTCAAAACAAGACACAAACACTTTAGAAACAAGTGCAAGGTCATTTGAGTTGAA
* ** * *
2173147 AAATCAAAAGTTTAGACCTCATTTAATCAAGATTTTAGACATGGAAATTAAATTTACCTCAATAT
66 AAATCAAAAGTTTAGACATCATTTAATCAAGATTCCAGACATGAAAATTAAATTTACCCCAATAT
2173212 TGTAATGTTTATTTAGTAAAAACCTTAAGCTCATGCTAATCCCCATT-AGTTGAGGCTAAAATAC
131 TGTAATGTTTATTTAGTAAAAACCTTAAGCTCATGCTAATCCCCATTGA-TTGAGGCTAAAATAC
* * * *
2173276 TTAACTT-GAAGAGGTTTTGAAAAATCAATTTTTTTAGAGGCAAGCAAGTATGCATTTTGGACAA
195 TTAACTTCG-AGAAGCTATGAAAAATCAATTTTTTTAGAGACAAGCAAGTATGCATTTTGGACAA
2173340 GGAAAACATGATGAACTTAGAAGAA
259 GGAAAACATGATGAACTTAGAAGAA
2173365 CAA
1 CAA
2173368 TGAATGACAT
Statistics
Matches: 260, Mismatches: 23, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
282 5 0.02
283 255 0.98
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (283 bp):
CAAGGTTTTGACTCAAAACAAGACACAAACACTTTAGAAACAAGTGCAAGGTCATTTGAGTTGAA
AAATCAAAAGTTTAGACATCATTTAATCAAGATTCCAGACATGAAAATTAAATTTACCCCAATAT
TGTAATGTTTATTTAGTAAAAACCTTAAGCTCATGCTAATCCCCATTGATTGAGGCTAAAATACT
TAACTTCGAGAAGCTATGAAAAATCAATTTTTTTAGAGACAAGCAAGTATGCATTTTGGACAAGG
AAAACATGATGAACTTAGAAGAA
Found at i:2178385 original size:13 final size:13
Alignment explanation
Indices: 2178367--2178393 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
2178357 ACATTATGCT
2178367 TTGTATCGATACA
1 TTGTATCGATACA
2178380 TTGTATCGATACA
1 TTGTATCGATACA
2178393 T
1 T
2178394 GTTCATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:2178423 original size:20 final size:19
Alignment explanation
Indices: 2178377--2178430 Score: 72
Period size: 19 Copynumber: 2.8 Consensus size: 19
2178367 TTGTATCGAT
*
2178377 ACATTGTATCGATACATGT
1 ACATTGTATCGATACATGG
*
2178396 TCATTGTATCGATACATGG
1 ACATTGTATCGATACATGG
*
2178415 ACAATTGTATTGATAC
1 AC-ATTGTATCGATAC
2178431 TTGAAATTGG
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 18 0.60
20 12 0.40
ACGTcount: A:0.31, C:0.15, G:0.17, T:0.37
Consensus pattern (19 bp):
ACATTGTATCGATACATGG
Found at i:2178488 original size:20 final size:20
Alignment explanation
Indices: 2178463--2178515 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 20
2178453 TACCACTGTT
*
2178463 TGTATCGATACATGGT-ACAA
1 TGTATCGATACATGATGA-AA
*
2178483 TGTATCGATACATGATGAAT
1 TGTATCGATACATGATGAAA
2178503 TGTATCGATACAT
1 TGTATCGATACAT
2178516 TACTTGTAAC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 29 0.97
21 1 0.03
ACGTcount: A:0.34, C:0.13, G:0.19, T:0.34
Consensus pattern (20 bp):
TGTATCGATACATGATGAAA
Found at i:2182767 original size:13 final size:13
Alignment explanation
Indices: 2182749--2182775 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
2182739 ACAATATTCC
2182749 TTGTATCGATACA
1 TTGTATCGATACA
2182762 TTGTATCGATACA
1 TTGTATCGATACA
2182775 T
1 T
2182776 GGGTTATTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:2185242 original size:15 final size:14
Alignment explanation
Indices: 2185221--2185261 Score: 59
Period size: 12 Copynumber: 3.0 Consensus size: 14
2185211 ACTCACCCAG
2185221 ATGTATCGATACAT
1 ATGTATCGATACAT
2185235 ATTGTATCGATAC--
1 A-TGTATCGATACAT
2185248 ATGTATCGATACAT
1 ATGTATCGATACAT
2185262 GAAATTGGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
12 11 0.46
13 1 0.04
14 1 0.04
15 11 0.46
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.37
Consensus pattern (14 bp):
ATGTATCGATACAT
Found at i:2186654 original size:79 final size:79
Alignment explanation
Indices: 2186356--2186662 Score: 401
Period size: 76 Copynumber: 3.9 Consensus size: 79
2186346 TTTTGGAGAT
* *
2186356 AATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATCGATGATTTAGAAATAAAATCGG-GATTG
1 AATAACGGGGTTAGAGTATCCCCGATTGTGAAAAATCGATGTTTTAGAAATAAAATCGGAG-TTG
2186420 GAGTATCCCCTCGAA
65 GAGTATCCCCTCGAA
* * * * * *
2186435 AATAA-GGGGTTAGACTATCCCCGACTATGAAAAATTGATATTTTAGAAATAAAA-CCGAGGTTG
1 AATAACGGGGTTAGAGTATCCCCGATTGTGAAAAATCGATGTTTTAGAAATAAAATCGGA-GTTG
* *
2186498 GAGTATTCCCTTGAA
65 GAGTATCCCCTCGAA
* * *
2186513 AATAACGGGGTTAGAGTATCCCCGA---TGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGG
1 AATAACGGGGTTAGAGTATCCCCGATTGTGAAAAATCGATGTTTTAGAAATAAAATCGGAGTTGG
*
2186575 AGTGTCCCCTCGAA
66 AGTATCCCCTCGAA
* *
2186589 AATAACGGGGTTAGAGTATCCCCGATTGTGAAAAGTCGATGTTTTGGAAATAAAATCGGAGTTGG
1 AATAACGGGGTTAGAGTATCCCCGATTGTGAAAAATCGATGTTTTAGAAATAAAATCGGAGTTGG
*
2186654 AGTGTCCCC
66 AGTATCCCC
2186663 GATTATGGAA
Statistics
Matches: 199, Mismatches: 22, Indels: 14
0.85 0.09 0.06
Matches are distributed among these distances:
76 67 0.34
77 4 0.02
78 63 0.32
79 65 0.33
ACGTcount: A:0.34, C:0.15, G:0.25, T:0.26
Consensus pattern (79 bp):
AATAACGGGGTTAGAGTATCCCCGATTGTGAAAAATCGATGTTTTAGAAATAAAATCGGAGTTGG
AGTATCCCCTCGAA
Found at i:2186663 original size:51 final size:50
Alignment explanation
Indices: 2186602--2186774 Score: 213
Period size: 51 Copynumber: 3.4 Consensus size: 50
2186592 AACGGGGTTA
*
2186602 GAGTATCCCCGATTGTGAAAAGTCGATGTTTTGGAAATAAAATCGGAGTTG
1 GAGTATCCCCGATTATGAAAA-TCGATGTTTTGGAAATAAAATCGGAGTTG
* * * *
2186653 GAGTGTCCCCGATTATGGAAAATGGGTGTTTTAGAAATAAAATCGGAGTTG
1 GAGTATCCCCGATTAT-GAAAATCGATGTTTTGGAAATAAAATCGGAGTTG
* * * * *
2186704 GAGTATCCCCGATTAAGAAAATTTGATGTTTTGGAAATGAAACCGGAATTG
1 GAGTATCCCCGATTATGAAAA-TCGATGTTTTGGAAATAAAATCGGAGTTG
*
2186755 GAGTATCCCCGA-GATGAAAA
1 GAGTATCCCCGATTATGAAAA
2186775 ATCTAGAAAT
Statistics
Matches: 105, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
50 11 0.10
51 89 0.85
52 5 0.05
ACGTcount: A:0.34, C:0.12, G:0.27, T:0.28
Consensus pattern (50 bp):
GAGTATCCCCGATTATGAAAATCGATGTTTTGGAAATAAAATCGGAGTTG
Found at i:2189158 original size:13 final size:13
Alignment explanation
Indices: 2189111--2189140 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
2189101 GTAAACCCAG
*
2189111 AATGTATCGATAC
1 AATGTATCAATAC
2189124 AATGTATCAATAC
1 AATGTATCAATAC
2189137 AATG
1 AATG
2189141 AACAATGTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.43, C:0.13, G:0.13, T:0.30
Consensus pattern (13 bp):
AATGTATCAATAC
Found at i:2199536 original size:2 final size:2
Alignment explanation
Indices: 2199529--2199557 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
2199519 AAAATACTTT
2199529 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
2199558 GTCTATGTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:2200544 original size:26 final size:25
Alignment explanation
Indices: 2200488--2200545 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 25
2200478 TACATAGAAT
*
2200488 CTTTTATATGAAATTTTCAATTAAA
1 CTTTTATATGAAATTTTCAATCAAA
*
2200513 CTTTTTATATGTAGAATTTT-GATCAAA
1 C-TTTTATATG-A-AATTTTCAATCAAA
2200540 CTTTTA
1 CTTTTA
2200546 CACAAATTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
25 1 0.04
26 14 0.50
27 7 0.25
28 6 0.21
ACGTcount: A:0.34, C:0.09, G:0.07, T:0.50
Consensus pattern (25 bp):
CTTTTATATGAAATTTTCAATCAAA
Found at i:2201183 original size:27 final size:26
Alignment explanation
Indices: 2201152--2201219 Score: 73
Period size: 27 Copynumber: 2.5 Consensus size: 26
2201142 ATACGTAAAT
2201152 ATTAAAAACTCTATACGTAAAAATTTA
1 ATTAAAAA-TCTATACGTAAAAATTTA
** *
2201179 ATTAAAAATTCTATTTGTAAAAGTTTA
1 ATTAAAAA-TCTATACGTAAAAATTTA
* *
2201206 TTTGAAAATCTATA
1 ATTAAAAATCTATA
2201220 AGAATTCTAT
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
26 5 0.15
27 29 0.85
ACGTcount: A:0.47, C:0.07, G:0.06, T:0.40
Consensus pattern (26 bp):
ATTAAAAATCTATACGTAAAAATTTA
Found at i:2202048 original size:18 final size:18
Alignment explanation
Indices: 2202027--2202083 Score: 52
Period size: 18 Copynumber: 3.3 Consensus size: 18
2202017 AGATGTTTGC
2202027 TAGAATTTGAATACAAAA
1 TAGAATTTGAATACAAAA
2202045 TAG-A--TGAGATACAAAA
1 TAGAATTTGA-ATACAAAA
*
2202061 -AGAACTTGGAATACAAAA
1 TAGAA-TTTGAATACAAAA
2202079 T-GAAT
1 TAGAAT
2202084 ACAAATGAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 13
0.70 0.02 0.28
Matches are distributed among these distances:
15 5 0.16
16 9 0.28
17 2 0.06
18 14 0.44
19 2 0.06
ACGTcount: A:0.54, C:0.07, G:0.16, T:0.23
Consensus pattern (18 bp):
TAGAATTTGAATACAAAA
Found at i:2204080 original size:28 final size:27
Alignment explanation
Indices: 2204043--2204142 Score: 85
Period size: 28 Copynumber: 3.6 Consensus size: 27
2204033 GAAATGAAAT
* *
2204043 CGGGATTGGAGTATCTCCTTAGAAATAA
1 CGGGGTTGGAGTATC-CCTCAGAAATAA
* * * **
2204071 TGGGGTTGGAGTGTCCCCTCGGAGGTAA
1 CGGGGTTGGAGTAT-CCCTCAGAAATAA
2204099 CGGGGTTGGAGTATCCC-CGATGAAATAA
1 CGGGGTTGGAGTATCCCTC-A-GAAATAA
*
2204127 CGAGGTTGGAGTATCC
1 CGGGGTTGGAGTATCC
2204143 TCGATTGTGA
Statistics
Matches: 56, Mismatches: 13, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
26 1 0.02
27 3 0.05
28 51 0.91
29 1 0.02
ACGTcount: A:0.24, C:0.17, G:0.34, T:0.25
Consensus pattern (27 bp):
CGGGGTTGGAGTATCCCTCAGAAATAA
Found at i:2204191 original size:52 final size:52
Alignment explanation
Indices: 2204131--2204356 Score: 305
Period size: 52 Copynumber: 4.4 Consensus size: 52
2204121 AAATAACGAG
* ** * *
2204131 GTTGGAGTATCCTCGATT-GTGAAAAATTGGTGTTTTTGAAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTAAAGGAAAATTAGTG-TTTTGAAAATAAAATCGGA
*
2204183 GTTGGAGTAT-CCCGATTAAAGGAAAATTAGTGTTTTGAAAATAAAATCGGG
1 GTTGGAGTATCCCCGATTAAAGGAAAATTAGTGTTTTGAAAATAAAATCGGA
* **
2204234 GTTTGAGTATCCCCGATT-GTGGAAAATTAGTGTTTTAGAAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTAAAGGAAAATTAGTGTTTT-GAAAATAAAATCGGA
* * *
2204286 GTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTTGAAAATAAAACCGGG
1 GTTGGAGTATCCCCGATTAAAGGAAAATTAGTGTTTTGAAAATAAAATCGGA
2204338 GTTGGAGTATCCCCGATTA
1 GTTGGAGTATCCCCGATTA
2204357 TAAACAATTA
Statistics
Matches: 154, Mismatches: 16, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
51 49 0.32
52 90 0.58
53 15 0.10
ACGTcount: A:0.34, C:0.10, G:0.25, T:0.31
Consensus pattern (52 bp):
GTTGGAGTATCCCCGATTAAAGGAAAATTAGTGTTTTGAAAATAAAATCGGA
Found at i:2204254 original size:103 final size:104
Alignment explanation
Indices: 2204130--2204355 Score: 382
Period size: 103 Copynumber: 2.2 Consensus size: 104
2204120 GAAATAACGA
* * *
2204130 GGTTGGAGTATCCTCGATTGTGAAAAATTGGTGTTTTTGAAAATAAAATCGGAGTTGGAGTAT-C
1 GGTTGGAGTATCCCCGATTGTGAAAAATTAGTGTTTTAGAAAATAAAATCGGAGTTGGAGTATCC
*
2204194 CCGATTAAAGGAAAATTAGTGTTTTGAAAATAAAATCGG
66 CCGATTAAAGGAAAATTAGTGTTTTGAAAATAAAACCGG
* *
2204233 GGTTTGAGTATCCCCGATTGTGGAAAATTAGTGTTTTAGAAAATAAAATCGGAGTTGGAGTATCC
1 GGTTGGAGTATCCCCGATTGTGAAAAATTAGTGTTTTAGAAAATAAAATCGGAGTTGGAGTATCC
*
2204298 CCGATTAAAGGAAAATTGGTGTTTTGAAAATAAAACCGG
66 CCGATTAAAGGAAAATTAGTGTTTTGAAAATAAAACCGG
2204337 GGTTGGAGTATCCCCGATT
1 GGTTGGAGTATCCCCGATT
2204356 ATAAACAATT
Statistics
Matches: 114, Mismatches: 8, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
103 58 0.51
104 56 0.49
ACGTcount: A:0.33, C:0.10, G:0.26, T:0.31
Consensus pattern (104 bp):
GGTTGGAGTATCCCCGATTGTGAAAAATTAGTGTTTTAGAAAATAAAATCGGAGTTGGAGTATCC
CCGATTAAAGGAAAATTAGTGTTTTGAAAATAAAACCGG
Found at i:2206741 original size:13 final size:13
Alignment explanation
Indices: 2206723--2206748 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2206713 ACAAAGATCG
2206723 ATGTATCGATACA
1 ATGTATCGATACA
2206736 ATGTATCGATACA
1 ATGTATCGATACA
2206749 TTTCTTTGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2206790 original size:13 final size:13
Alignment explanation
Indices: 2206772--2206823 Score: 50
Period size: 13 Copynumber: 3.5 Consensus size: 13
2206762 AGCTTCGTAG
2206772 CGATACATTGTAT
1 CGATACATTGTAT
2206785 CGATACAAAACTTATGTAT
1 CGATAC---A-TT--GTAT
2206804 CGATACATTGTAT
1 CGATACATTGTAT
2206817 CGATACA
1 CGATACA
2206824 ACACTTATGT
Statistics
Matches: 33, Mismatches: 0, Indels: 12
0.73 0.00 0.27
Matches are distributed among these distances:
13 17 0.52
15 2 0.06
16 2 0.06
17 2 0.06
19 10 0.30
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (13 bp):
CGATACATTGTAT
Found at i:2206804 original size:19 final size:18
Alignment explanation
Indices: 2206780--2206842 Score: 73
Period size: 19 Copynumber: 3.7 Consensus size: 18
2206770 AGCGATACAT
2206780 TGTATCGATACAAAACTTA
1 TGTATCGATAC-AAACTTA
2206799 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
2206812 TGTATCGATACAACACTTA
1 TGTATCGATACAA-ACTTA
2206831 TGTATCGATACA
1 TGTATCGATACA
2206843 TTTACGGTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 11 0.29
14 1 0.03
16 2 0.05
18 1 0.03
19 23 0.61
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:2206813 original size:32 final size:32
Alignment explanation
Indices: 2206772--2206844 Score: 137
Period size: 32 Copynumber: 2.3 Consensus size: 32
2206762 AGCTTCGTAG
2206772 CGATACATTGTATCGATACAAAACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
*
2206804 CGATACATTGTATCGATACAACACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
2206836 CGATACATT
1 CGATACATT
2206845 TACGGTTTGT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 40 1.00
ACGTcount: A:0.36, C:0.18, G:0.12, T:0.34
Consensus pattern (32 bp):
CGATACATTGTATCGATACAAAACTTATGTAT
Found at i:2207782 original size:61 final size:58
Alignment explanation
Indices: 2207694--2208053 Score: 404
Period size: 55 Copynumber: 6.3 Consensus size: 58
2207684 ATAAAGTGTA
** *
2207694 TCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTTATGTGGGCTTTGAAAATGAAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTG--AA-GAAAGGCG
* * * *
2207755 TCCTGCTTTTTGAGGACTAGAAGGTGCCACCAACTTGTATGGGCTTTGCAAAGGAAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTG--AA-GAAAGGCG
* * * *
2207816 TCTTGCTCTTTGAGGACTGGAAAATGCCACCAACTCGTGTGGGCTTTG-A-AAA-GCA
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAGAAAGGCG
* * *
2207871 TCCTACTCTTTGAGGACTGGAAAATGCCACCAACTGGTGTGGGCTTT-AAG--AGGCG
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAGAAAGGCG
* *
2207926 TCCTGCTCTTTGAGGATTGGGAAGTGCCACCAACTTGTGTGGGCTTT--A-AAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAGAAAGGCG
* *
2207981 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTAGGCTTT---GAAAGGTG
1 TCCTGCTCTTTGAGGACTGGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAGAAAGGCG
2208036 TCCTGCTCTTTGAGGACT
1 TCCTGCTCTTTGAGGACT
2208054 AAAGGGCGAA
Statistics
Matches: 264, Mismatches: 28, Indels: 20
0.85 0.09 0.06
Matches are distributed among these distances:
54 5 0.02
55 160 0.61
56 3 0.01
58 1 0.00
61 95 0.36
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (58 bp):
TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAGAAAGGCG
Found at i:2207893 original size:27 final size:28
Alignment explanation
Indices: 2207821--2207905 Score: 88
Period size: 28 Copynumber: 3.1 Consensus size: 28
2207811 AGGCGTCTTG
2207821 CTCTTTGAGGACTGGAAAATGCCACCAA
1 CTCTTTGAGGACTGGAAAATGCCACCAA
* * *
2207849 CTCGTGTG-GG-CTTTGAAAA-G-CATCCTA
1 CTC-TTTGAGGAC-TGGAAAATGCCA-CCAA
2207876 CTCTTTGAGGACTGGAAAATGCCACCAA
1 CTCTTTGAGGACTGGAAAATGCCACCAA
2207904 CT
1 CT
2207906 GGTGTGGGCT
Statistics
Matches: 44, Mismatches: 6, Indels: 14
0.69 0.09 0.22
Matches are distributed among these distances:
26 5 0.11
27 16 0.36
28 18 0.41
29 5 0.11
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (28 bp):
CTCTTTGAGGACTGGAAAATGCCACCAA
Found at i:2221677 original size:28 final size:28
Alignment explanation
Indices: 2221644--2221738 Score: 111
Period size: 28 Copynumber: 3.4 Consensus size: 28
2221634 GAAATTGGGA
*
2221644 TTGGAGTATCTCCTTGGAAATAACGGGG
1 TTGGAGTATCCCCTTGGAAATAACGGGG
* **
2221672 TTGGAGTATCCCCTCGGAGGTAACGGGG
1 TTGGAGTATCCCCTTGGAAATAACGGGG
* *
2221700 TTGGAGTATCCCCGAT-GAAATAACGAGG
1 TTGGAGTATCCCC-TTGGAAATAACGGGG
*
2221728 TTAGAGTATCC
1 TTGGAGTATCC
2221739 TCGATTGTGA
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
28 56 1.00
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (28 bp):
TTGGAGTATCCCCTTGGAAATAACGGGG
Found at i:2221790 original size:52 final size:52
Alignment explanation
Indices: 2221731--2221952 Score: 224
Period size: 52 Copynumber: 4.3 Consensus size: 52
2221721 AACGAGGTTA
** *
2221731 GAGTATCCTCGATT-GTGAAAAATTGGTGTTTTTAGAAATAAAATCAGAGTTG
1 GAGTATCCTCGATTAAAGAAAAATTAGTG-TTTTAGAAATAAAATCAGAGTTG
* *
2221783 GAGTATCCT-GATTAAAGGAAAATTAGTGTTTT-GAAAGTAAAA-CCGAGGTTG
1 GAGTATCCTCGATTAAAGAAAAATTAGTGTTTTAGAAA-TAAAATCAGA-GTTG
* **
2221834 GAGTATCCCCGATTGTAG-AAAATTAGTGTTTTAGAAAATAAAATCAGAGTTG
1 GAGTATCCTCGATTAAAGAAAAATTAGTGTTTTAG-AAATAAAATCAGAGTTG
* * * * *
2221886 GAGTATCCTCGATTAAAGGAAAATTGGTGTTTT-GAAAATAAAACCGGGGTTG
1 GAGTATCCTCGATTAAAGAAAAATTAGTGTTTTAG-AAATAAAATCAGAGTTG
2221938 GAGTAT-CTCCGATTA
1 GAGTATCCT-CGATTA
2221953 TAAACAATTG
Statistics
Matches: 145, Mismatches: 16, Indels: 18
0.81 0.09 0.10
Matches are distributed among these distances:
50 7 0.05
51 41 0.28
52 78 0.54
53 19 0.13
ACGTcount: A:0.36, C:0.09, G:0.24, T:0.31
Consensus pattern (52 bp):
GAGTATCCTCGATTAAAGAAAAATTAGTGTTTTAGAAATAAAATCAGAGTTG
Found at i:2221847 original size:103 final size:104
Alignment explanation
Indices: 2221723--2221951 Score: 356
Period size: 103 Copynumber: 2.2 Consensus size: 104
2221713 GATGAAATAA
* * *
2221723 CGAGGTTAGAGTATCCTCGATTGT-GAAAAATTGGTGTTTTTAG-AAATAAAATCAGAGTTGGAG
1 CGAGGTTGGAGTATCCCCGATTGTAG-AAAATTAGTG-TTTTAGAAAATAAAATCAGAGTTGGAG
*
2221786 TATCCT-GATTAAAGGAAAATTAGTGTTTTGAAAGTAAAAC
64 TATCCTCGATTAAAGGAAAATTAGTGTTTTGAAAATAAAAC
2221826 CGAGGTTGGAGTATCCCCGATTGTAGAAAATTAGTGTTTTAGAAAATAAAATCAGAGTTGGAGTA
1 CGAGGTTGGAGTATCCCCGATTGTAGAAAATTAGTGTTTTAGAAAATAAAATCAGAGTTGGAGTA
*
2221891 TCCTCGATTAAAGGAAAATTGGTGTTTTGAAAATAAAAC
66 TCCTCGATTAAAGGAAAATTAGTGTTTTGAAAATAAAAC
* *
2221930 CGGGGTTGGAGTATCTCCGATT
1 CGAGGTTGGAGTATCCCCGATT
2221952 ATAAACAATT
Statistics
Matches: 116, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
102 6 0.05
103 57 0.49
104 53 0.46
ACGTcount: A:0.35, C:0.10, G:0.24, T:0.31
Consensus pattern (104 bp):
CGAGGTTGGAGTATCCCCGATTGTAGAAAATTAGTGTTTTAGAAAATAAAATCAGAGTTGGAGTA
TCCTCGATTAAAGGAAAATTAGTGTTTTGAAAATAAAAC
Found at i:2224283 original size:13 final size:13
Alignment explanation
Indices: 2224265--2224290 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2224255 TACACCAAGT
2224265 ATGTATCGATACA
1 ATGTATCGATACA
2224278 ATGTATCGATACA
1 ATGTATCGATACA
2224291 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2224288 original size:32 final size:33
Alignment explanation
Indices: 2224247--2224310 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
2224237 TAGCCAAACT
* **
2224247 TGTATCGATACACCAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
2224279 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
2224311 TTGGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.57
33 12 0.43
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:2225509 original size:13 final size:13
Alignment explanation
Indices: 2225491--2225516 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2225481 ACAAAGATCG
2225491 ATGTATCGATACA
1 ATGTATCGATACA
2225504 ATGTATCGATACA
1 ATGTATCGATACA
2225517 TTTCCTTGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2225572 original size:19 final size:18
Alignment explanation
Indices: 2225548--2225610 Score: 64
Period size: 19 Copynumber: 3.7 Consensus size: 18
2225538 AGCGATACAT
2225548 TGTATCGATACAAAACTTA
1 TGTATCGATAC-AAACTTA
2225567 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
*
2225580 TGTATCGATAGAACACTTA
1 TGTATCGATACAA-ACTTA
2225599 TGTATCGATACA
1 TGTATCGATACA
2225611 TTTACGGTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 12
0.72 0.04 0.24
Matches are distributed among these distances:
13 10 0.28
14 1 0.03
16 2 0.06
18 1 0.03
19 22 0.61
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.33
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:2225581 original size:32 final size:32
Alignment explanation
Indices: 2225535--2225612 Score: 129
Period size: 32 Copynumber: 2.4 Consensus size: 32
2225525 GCAGTACCTT
*
2225535 TGTAGCGATACATTGTATCGATACAAAACTTA
1 TGTATCGATACATTGTATCGATACAAAACTTA
* *
2225567 TGTATCGATACATTGTATCGATAGAACACTTA
1 TGTATCGATACATTGTATCGATACAAAACTTA
2225599 TGTATCGATACATT
1 TGTATCGATACATT
2225613 TACGGTTTGT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 43 1.00
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Consensus pattern (32 bp):
TGTATCGATACATTGTATCGATACAAAACTTA
Found at i:2233528 original size:51 final size:51
Alignment explanation
Indices: 2233432--2233528 Score: 122
Period size: 51 Copynumber: 1.9 Consensus size: 51
2233422 TACTGCCAAC
** * *
2233432 AGATGTATCGATACATTCATATAATTTATCGATACATTTAAAACAATCAAT
1 AGATGTATCGATACATTCATATAATGCATCGATAAATTCAAAACAATCAAT
* * * *
2233483 AGATGTATTGATACATTTATATAATGCATTGATAAATTCATAACAA
1 AGATGTATCGATACATTCATATAATGCATCGATAAATTCAAAACAA
2233529 AACATTTTTC
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
51 38 1.00
ACGTcount: A:0.43, C:0.11, G:0.09, T:0.36
Consensus pattern (51 bp):
AGATGTATCGATACATTCATATAATGCATCGATAAATTCAAAACAATCAAT
Found at i:2240372 original size:721 final size:721
Alignment explanation
Indices: 2238988--2240405 Score: 2800
Period size: 721 Copynumber: 2.0 Consensus size: 721
2238978 CGTTGCCTTT
2238988 TTATTATATTTTATGATTTTTGAAATTTTATATCTGTATGAGGCCGAACTTGAATTCAAATCCCT
1 TTATTATATTTTATGATTTTTGAAATTTTATATCTGTATGAGGCCGAACTTGAATTCAAATCCCT
2239053 TTAATAACCTCTCTTTTTTACAAAGGTGTTTGTATAAACAAAAAGAAACTCTAAAAGGTTAGGTA
66 TTAATAACCTCTCTTTTTTACAAAGGTGTTTGTATAAACAAAAAGAAACTCTAAAAGGTTAGGTA
2239118 TTTACAAAGTTTAAGCTCAACAAAGAGACTAAACACAGGTAGAATAGTAAAGGAATACAAGAATG
131 TTTACAAAGTTTAAGCTCAACAAAGAGACTAAACACAGGTAGAATAGTAAAGGAATACAAGAATG
*
2239183 ATATGAAAATAAAGTTTAGAACAAGAACAAAATTTAAAAAGCTTAAGAGAGATGGAAACTAGAAC
196 ATATGAAAATAAAGTTTAGAACAAGAACAAAATTTAAAAAGCTTAAGAAAGATGGAAACTAGAAC
2239248 TTTGAACTTTCTCACTTGGTATTTTTGCTTTTAGAAGTATTGGAGACTTCCACTATAGCTTGGAA
261 TTTGAACTTTCTCACTTGGTATTTTTGCTTTTAGAAGTATTGGAGACTTCCACTATAGCTTGGAA
2239313 ACGATTTATAATAGTTGGAAATGGATTAGGATGAAAAAAAGGCCATCGTAACTTCAAAAATTGAG
326 ACGATTTATAATAGTTGGAAATGGATTAGGATGAAAAAAAGGCCATCGTAACTTCAAAAATTGAG
2239378 CTTTGAAATCTGTTCAGCATCTAGAGGATCAATCCTTTATTTTAAGGGATTGATCCTTGCCTTTA
391 CTTTGAAATCTGTTCAGCATCTAGAGGATCAATCCTTTATTTTAAGGGATTGATCCTTGCCTTTA
2239443 AATATGAAATATTTGATTGTTGGAATTTTAAGAGATTGATCTTTTTTTATGGGGGATCGATTCTC
456 AATATGAAATATTTGATTGTTGGAATTTTAAGAGATTGATCTTTTTTTATGGGGGATCGATTCTC
2239508 TACTACATTGTAAAGTGAAATTAGCTTTTGTTTTGAAGGAATCGATCTTATACTATTAAGGAATC
521 TACTACATTGTAAAGTGAAATTAGCTTTTGTTTTGAAGGAATCGATCTTATACTATTAAGGAATC
2239573 GATCTTTACTTAAAAATATCTCATTTTTTTGTTTTAAAAATAGGTTAACTTGCTTAAAAAATCAT
586 GATCTTTACTTAAAAATATCTCATTTTTTTGTTTTAAAAATAGGTTAACTTGCTTAAAAAATCAT
2239638 TTGAATATAAGTATACATTTAAGAACCTACATTTTTAGAAAACTGAGGCCGAATATAAATATAAT
651 TTGAATATAAGTATACATTTAAGAACCTACATTTTTAGAAAACTGAGGCCGAATATAAATATAAT
2239703 AAAATC
716 AAAATC
*
2239709 TTATTATATTTTATGATTTTTGAAATTTTATATTTGTATGAGGCCGAACTTGAATTCAAATCCCT
1 TTATTATATTTTATGATTTTTGAAATTTTATATCTGTATGAGGCCGAACTTGAATTCAAATCCCT
2239774 TTAATAACCTCTCTTTTTTACAAAGGTGTTTGTATAAACAAAAAGAAACTCTAAAAGGTTAGGTA
66 TTAATAACCTCTCTTTTTTACAAAGGTGTTTGTATAAACAAAAAGAAACTCTAAAAGGTTAGGTA
2239839 TTTACAAAGTTTAAGCTCAACAAAGAGACTAAACACAGGTAGAATAGTAAAGGAATACAAGAATG
131 TTTACAAAGTTTAAGCTCAACAAAGAGACTAAACACAGGTAGAATAGTAAAGGAATACAAGAATG
2239904 ATATGAAAATAAAGTTTAGAACAAGAACAAAATTTAAAAAGCTTAAGAAAGATGGAAACTAGAAC
196 ATATGAAAATAAAGTTTAGAACAAGAACAAAATTTAAAAAGCTTAAGAAAGATGGAAACTAGAAC
2239969 TTTGAACTTTCTCACTTGGTATTTTTGCTTTTAGAAGTATTGGAGACTTCCACTATAGCTTGGAA
261 TTTGAACTTTCTCACTTGGTATTTTTGCTTTTAGAAGTATTGGAGACTTCCACTATAGCTTGGAA
2240034 ACGATTTATAATAGTTGGAAATGGATTAGGATGAAAAAAAGGCCATCGTAACTTCAAAAATTGAG
326 ACGATTTATAATAGTTGGAAATGGATTAGGATGAAAAAAAGGCCATCGTAACTTCAAAAATTGAG
*
2240099 CTTTGAAATCTGTTCGGCATCTAGAGGATCAATCCTTTATTTTAAGGGATTGATCCTTGCCTTTA
391 CTTTGAAATCTGTTCAGCATCTAGAGGATCAATCCTTTATTTTAAGGGATTGATCCTTGCCTTTA
2240164 AATATGAAATATTTGATTGTTGGAATTTTAAGAGATTGATCTTTTTTTATGGGGGATCGATTCTC
456 AATATGAAATATTTGATTGTTGGAATTTTAAGAGATTGATCTTTTTTTATGGGGGATCGATTCTC
2240229 TACTACATTGTAAAGTGAAATTAGCTTTTGTTTTGAAGGAATCGATCTTATACTATTAAGGAATC
521 TACTACATTGTAAAGTGAAATTAGCTTTTGTTTTGAAGGAATCGATCTTATACTATTAAGGAATC
2240294 GATCTTTACTTAAAAATATCTCATTTTTTTGTTTTAAAAATAGGTTAACTTGCTTAAAAAATCAT
586 GATCTTTACTTAAAAATATCTCATTTTTTTGTTTTAAAAATAGGTTAACTTGCTTAAAAAATCAT
*
2240359 TTGAATGTAAGTATACATTTAAGAACCTACATTTTTAGAAAACTGAG
651 TTGAATATAAGTATACATTTAAGAACCTACATTTTTAGAAAACTGAG
2240406 TGTATTTCCA
Statistics
Matches: 693, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
721 693 1.00
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.35
Consensus pattern (721 bp):
TTATTATATTTTATGATTTTTGAAATTTTATATCTGTATGAGGCCGAACTTGAATTCAAATCCCT
TTAATAACCTCTCTTTTTTACAAAGGTGTTTGTATAAACAAAAAGAAACTCTAAAAGGTTAGGTA
TTTACAAAGTTTAAGCTCAACAAAGAGACTAAACACAGGTAGAATAGTAAAGGAATACAAGAATG
ATATGAAAATAAAGTTTAGAACAAGAACAAAATTTAAAAAGCTTAAGAAAGATGGAAACTAGAAC
TTTGAACTTTCTCACTTGGTATTTTTGCTTTTAGAAGTATTGGAGACTTCCACTATAGCTTGGAA
ACGATTTATAATAGTTGGAAATGGATTAGGATGAAAAAAAGGCCATCGTAACTTCAAAAATTGAG
CTTTGAAATCTGTTCAGCATCTAGAGGATCAATCCTTTATTTTAAGGGATTGATCCTTGCCTTTA
AATATGAAATATTTGATTGTTGGAATTTTAAGAGATTGATCTTTTTTTATGGGGGATCGATTCTC
TACTACATTGTAAAGTGAAATTAGCTTTTGTTTTGAAGGAATCGATCTTATACTATTAAGGAATC
GATCTTTACTTAAAAATATCTCATTTTTTTGTTTTAAAAATAGGTTAACTTGCTTAAAAAATCAT
TTGAATATAAGTATACATTTAAGAACCTACATTTTTAGAAAACTGAGGCCGAATATAAATATAAT
AAAATC
Done.