Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold41
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2798036
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.34
Warning! 10448 characters in sequence are not A, C, G, or T
File 19 of 21
Found at i:2398434 original size:10 final size:10
Alignment explanation
Indices: 2398419--2398485 Score: 50
Period size: 10 Copynumber: 6.7 Consensus size: 10
2398409 CTAATCTTTT
2398419 AATTTATATA
1 AATTTATATA
2398429 AATTTATATAA
1 AATTTATAT-A
* *
2398440 AAATAATATAA
1 AATTTATAT-A
* *
2398451 AAATGATATTA
1 AATTTATA-TA
2398462 AA---ATATA
1 AATTTATATA
2398469 AATTTATATA
1 AATTTATATA
2398479 AATTTAT
1 AATTTAT
2398486 TTTACTTTAA
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
7 4 0.08
8 3 0.06
10 21 0.43
11 20 0.41
12 1 0.02
ACGTcount: A:0.57, C:0.00, G:0.01, T:0.42
Consensus pattern (10 bp):
AATTTATATA
Found at i:2398586 original size:14 final size:14
Alignment explanation
Indices: 2398569--2398597 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
2398559 TATATAAATG
2398569 ATATAAATATACAT
1 ATATAAATATACAT
2398583 ATATAAATATACAT
1 ATATAAATATACAT
2398597 A
1 A
2398598 AAATAAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (14 bp):
ATATAAATATACAT
Found at i:2398759 original size:17 final size:16
Alignment explanation
Indices: 2398737--2398776 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
2398727 TGAACTACAA
*
2398737 AAAAAAAAGATTGAAAG
1 AAAAAAAA-ACTGAAAG
*
2398754 AAAAAAAAACTGCAAG
1 AAAAAAAAACTGAAAG
2398770 AAAAAAA
1 AAAAAAA
2398777 TAAAACAACA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 13 0.62
17 8 0.38
ACGTcount: A:0.75, C:0.05, G:0.12, T:0.07
Consensus pattern (16 bp):
AAAAAAAAACTGAAAG
Found at i:2399989 original size:22 final size:22
Alignment explanation
Indices: 2399960--2400013 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
2399950 GAACACATAA
* * *
2399960 ATTTTTTTCTTTTTCTTTCTTTC
1 ATTTTTTT-TTATCCTTTCTGTC
2399983 ATTTTTTTTTATCCTTTCTGTC
1 ATTTTTTTTTATCCTTTCTGTC
2400005 -TTTTTTTTT
1 ATTTTTTTTT
2400014 CAACCTTGCC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 9 0.32
22 11 0.39
23 8 0.29
ACGTcount: A:0.06, C:0.15, G:0.02, T:0.78
Consensus pattern (22 bp):
ATTTTTTTTTATCCTTTCTGTC
Found at i:2400020 original size:22 final size:22
Alignment explanation
Indices: 2399974--2400020 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
2399964 TTTTCTTTTT
* *
2399974 CTTTCTTTCATTTTTTTTTATC
1 CTTTCTGTCATTTTTTTTTAAC
2399996 CTTTCTGTC-TTTTTTTTTCAAC
1 CTTTCTGTCATTTTTTTTT-AAC
2400018 CTT
1 CTT
2400021 GCCTTGTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 9 0.41
22 13 0.59
ACGTcount: A:0.09, C:0.21, G:0.02, T:0.68
Consensus pattern (22 bp):
CTTTCTGTCATTTTTTTTTAAC
Found at i:2400393 original size:18 final size:19
Alignment explanation
Indices: 2400372--2400415 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
2400362 ACGTACATAT
*
2400372 AAAAATATA-TATTAAATA
1 AAAAATATATTAATAAATA
*
2400390 AAAAAT-TATTAATATATA
1 AAAAATATATTAATAAATA
2400408 AAAAATAT
1 AAAAATAT
2400416 GTAAAAATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 2 0.09
18 19 0.86
19 1 0.05
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (19 bp):
AAAAATATATTAATAAATA
Found at i:2400456 original size:49 final size:47
Alignment explanation
Indices: 2400371--2400464 Score: 120
Period size: 49 Copynumber: 2.0 Consensus size: 47
2400361 TACGTACATA
* *
2400371 TAAAAATATATATTAAATAAAAAATTATTAATATATAAA-AAATATG
1 TAAAAATATATATTAAATAAAAAATTAATAAAATATAAATAAATATG
2400417 TAAAAATATAATATTTTAAATAAAAAA-TAATACAAATATAAATAAATA
1 TAAAAATAT-ATA--TTAAATAAAAAATTAATA-AAATATAAATAAATA
2400465 AATTTTTGCC
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
46 9 0.22
47 3 0.07
48 4 0.10
49 20 0.49
50 5 0.12
ACGTcount: A:0.65, C:0.01, G:0.01, T:0.33
Consensus pattern (47 bp):
TAAAAATATATATTAAATAAAAAATTAATAAAATATAAATAAATATG
Found at i:2400492 original size:7 final size:8
Alignment explanation
Indices: 2400479--2400535 Score: 55
Period size: 8 Copynumber: 6.9 Consensus size: 8
2400469 TTTGCCTCCT
2400479 TCTTTTTC
1 TCTTTTTC
2400487 -CTTTTTC
1 TCTTTTTC
*
2400494 TTTTTTTC
1 TCTTTTTC
2400502 TCTTTTT-
1 TCTTTTTC
2400509 TCTCTTTTC
1 TCT-TTTTC
2400518 TTCCTTTTTC
1 -T-CTTTTTC
2400528 TTCTTTTT
1 -TCTTTTT
2400536 TTTTCTTTCT
Statistics
Matches: 42, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
7 10 0.24
8 16 0.38
9 6 0.14
10 8 0.19
11 2 0.05
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (8 bp):
TCTTTTTC
Found at i:2400505 original size:10 final size:10
Alignment explanation
Indices: 2400488--2400549 Score: 62
Period size: 9 Copynumber: 6.6 Consensus size: 10
2400478 TTCTTTTTCC
2400488 TTTT-TCTTT
1 TTTTCTCTTT
2400497 TTTTCTC-TT
1 TTTTCTCTTT
2400506 TTTTCTCTTT
1 TTTTCTCTTT
*
2400516 TCTTC-CTTT
1 TTTTCTCTTT
2400525 TTCTTCT-TTT
1 TT-TTCTCTTT
2400535 TTTT-TCTTT
1 TTTTCTCTTT
*
2400544 CTTTCT
1 TTTTCT
2400550 TTGTTAACTG
Statistics
Matches: 44, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
8 1 0.02
9 26 0.59
10 17 0.39
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (10 bp):
TTTTCTCTTT
Found at i:2402269 original size:2 final size:2
Alignment explanation
Indices: 2402264--2402295 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
2402254 CCACACAAGA
2402264 AG AG AG AG AG AG AG AG AG AG AG AG AG AG -G AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
2402296 AGTGAGGTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:2405221 original size:7 final size:7
Alignment explanation
Indices: 2405209--2405238 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
2405199 ATTTGGAAGC
2405209 TTGCCAT
1 TTGCCAT
2405216 TTGCCAT
1 TTGCCAT
2405223 TTGCCAT
1 TTGCCAT
2405230 TTGCCAT
1 TTGCCAT
2405237 TT
1 TT
2405239 TTGATTTGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.13, C:0.27, G:0.13, T:0.47
Consensus pattern (7 bp):
TTGCCAT
Found at i:2406381 original size:33 final size:33
Alignment explanation
Indices: 2406339--2406404 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
2406329 AAAGAAAGAA
2406339 TGCTAACTCTTAAGTTTCAGAAGCCAAAATCCT
1 TGCTAACTCTTAAGTTTCAGAAGCCAAAATCCT
2406372 TGCTAACTCTTAAGTTTCAGAAGCCAAAATCCT
1 TGCTAACTCTTAAGTTTCAGAAGCCAAAATCCT
2406405 CAAATCCTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.33, C:0.24, G:0.12, T:0.30
Consensus pattern (33 bp):
TGCTAACTCTTAAGTTTCAGAAGCCAAAATCCT
Found at i:2412826 original size:2 final size:2
Alignment explanation
Indices: 2412819--2412855 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
2412809 GATAGGGAGG
2412819 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G- GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
2412856 CTGACCTCGC
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
GA
Found at i:2413086 original size:11 final size:12
Alignment explanation
Indices: 2413069--2413097 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
2413059 AAAGTCGCCC
2413069 CTTGCTTTTAAT
1 CTTGCTTTTAAT
2413081 -TTGCTTTTAAT
1 CTTGCTTTTAAT
2413092 CTTGCT
1 CTTGCT
2413098 CAGGAAGGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.69
12 5 0.31
ACGTcount: A:0.14, C:0.17, G:0.10, T:0.59
Consensus pattern (12 bp):
CTTGCTTTTAAT
Found at i:2413753 original size:21 final size:21
Alignment explanation
Indices: 2413727--2413766 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
2413717 ATTAAAAAAT
2413727 TATTTTAT-ATTAATATTTATA
1 TATTTTATAATTAA-ATTTATA
2413748 TATTTTATAATTAAATTTA
1 TATTTTATAATTAAATTTA
2413767 AATAAATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (21 bp):
TATTTTATAATTAAATTTATA
Found at i:2413777 original size:23 final size:21
Alignment explanation
Indices: 2413728--2413778 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 21
2413718 TTAAAAAATT
*
2413728 ATTTTATATTAATATTTATAT
1 ATTTTATATTAATATTTATAA
2413749 ATTTTATAATTAA-ATTTAAATAA
1 ATTTTAT-ATTAATATTT--ATAA
2413772 ATTTTAT
1 ATTTTAT
2413779 TAAATTAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
21 11 0.42
22 5 0.19
23 10 0.38
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (21 bp):
ATTTTATATTAATATTTATAA
Found at i:2419253 original size:21 final size:21
Alignment explanation
Indices: 2419229--2419280 Score: 54
Period size: 21 Copynumber: 2.4 Consensus size: 21
2419219 GAACTAGAGG
*
2419229 AGAAAATG-AATATGTTGGAAA
1 AGAAAATGAAATA-GTTGCAAA
2419250 AGAAAA-GAAATGAGTTGCAAA
1 AGAAAATGAAAT-AGTTGCAAA
2419271 ATGAAAATGA
1 A-GAAAATGA
2419281 TGAATTAACT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
20 1 0.04
21 17 0.65
22 6 0.23
23 2 0.08
ACGTcount: A:0.56, C:0.02, G:0.23, T:0.19
Consensus pattern (21 bp):
AGAAAATGAAATAGTTGCAAA
Found at i:2424275 original size:21 final size:21
Alignment explanation
Indices: 2424251--2424303 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 21
2424241 TTTTACAATT
* *
2424251 TGTATCAATACAACAAGTTAA
1 TGTATCGATACAACAAGTAAA
*
2424272 TGTATCGATAC-ATAAGTAAA
1 TGTATCGATACAACAAGTAAA
2424292 TGTATCGATACA
1 TGTATCGATACA
2424304 GGACCTTGTC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 18 0.64
21 10 0.36
ACGTcount: A:0.43, C:0.13, G:0.13, T:0.30
Consensus pattern (21 bp):
TGTATCGATACAACAAGTAAA
Found at i:2424455 original size:52 final size:52
Alignment explanation
Indices: 2424338--2424457 Score: 152
Period size: 52 Copynumber: 2.3 Consensus size: 52
2424328 ATTTTGAAAA
* * * * *
2424338 AAATATATCGATACA-TTTTTATTGTATCGATACATTTTGGGTTTTTGACCC
1 AAATGTATCGATACATTTTTTATTGTATCAATACATTCTAGGTTTTTAACCC
* ** *
2424389 AAATGCATTAATACATTTTTTATTGTATCAATATATTCTAGGTTTTTAACCC
1 AAATGTATCGATACATTTTTTATTGTATCAATACATTCTAGGTTTTTAACCC
2424441 AAATGTATCGATACATT
1 AAATGTATCGATACATT
2424458 CTTCAATGTA
Statistics
Matches: 56, Mismatches: 12, Indels: 1
0.81 0.17 0.01
Matches are distributed among these distances:
51 11 0.20
52 45 0.80
ACGTcount: A:0.32, C:0.13, G:0.11, T:0.44
Consensus pattern (52 bp):
AAATGTATCGATACATTTTTTATTGTATCAATACATTCTAGGTTTTTAACCC
Found at i:2427087 original size:18 final size:18
Alignment explanation
Indices: 2427064--2427098 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
2427054 ATCTAGATAA
2427064 ATCTCTAAATTGTCAATG
1 ATCTCTAAATTGTCAATG
*
2427082 ATCTCTAAATTTTCAAT
1 ATCTCTAAATTGTCAAT
2427099 TCAGTTATCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.34, C:0.17, G:0.06, T:0.43
Consensus pattern (18 bp):
ATCTCTAAATTGTCAATG
Found at i:2434141 original size:16 final size:16
Alignment explanation
Indices: 2434120--2434150 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
2434110 CTATAAAAAA
*
2434120 TATTTACTTATTATTT
1 TATTTAATTATTATTT
2434136 TATTTAATTATTATT
1 TATTTAATTATTATT
2434151 AATTTTTTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (16 bp):
TATTTAATTATTATTT
Found at i:2435047 original size:13 final size:13
Alignment explanation
Indices: 2435024--2435056 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
2435014 TTTTTCTTTC
*
2435024 TTTTTTC-CTCTT
1 TTTTTTCTCTCTA
2435036 TTTTTTCTCTCTA
1 TTTTTTCTCTCTA
2435049 TTTTTTCT
1 TTTTTTCT
2435057 ATCAGCTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 7 0.37
13 12 0.63
ACGTcount: A:0.03, C:0.21, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTTTTCTCTCTA
Found at i:2436155 original size:167 final size:164
Alignment explanation
Indices: 2435610--2436172 Score: 570
Period size: 167 Copynumber: 3.4 Consensus size: 164
2435600 GACAAAGTTA
* * * * **
2435610 TATGAATTTTAAAAATTTTAAATCAAGAAAAAACCTCTCGAAAAAATTTATAAAGTAGAAAATTC
1 TATGAATTTTAAAAATTTAAAACCAAGAAAAATCCTCCCGAAAAAATTTACGAAGTAGAAAATTC
* * *
2435675 AGTTTTTTGGAAA-AAGTA-AATTTCAA-GAAAAAATGAGAAACTCATGAAAATGAATGAATTTT
66 A-TATTTTGGAAACAA-TAGAATTTCAAGGAAAAAATGAAAAACTCATGAAAATGAATGAA-TTC
*
2435737 TGAAAACTGATTTAATATGAAATAATTAATAATATTT
128 TGAAAACTGATTTAATATGAAATAAATAATAATATTT
* * *
2435774 TATGAATTTTAAAAA-TTAAGAACCAAGAAAAAT-CTCCCAAAAAAAATTTACGGAGTATAAAAT
1 TATGAATTTTAAAAATTTAA-AACCAAGAAAAATCCTCCC-GAAAAAATTTACGAAGTAGAAAA-
* *
2435837 TTTCTTATTTTGGAAAC-AGAGAAATTTCAAGGAAAAAATGAAAAACTCATGAAAATGAATGAAT
63 -TTCATATTTTGGAAACAATAG-AATTTCAAGGAAAAAATGAAAAACTCATGAAAATGAATGAAT
* * *
2435901 TCTTGAAAACTGAGTTAAAATGAAGTAAATAATAATATTT
126 TC-TGAAAACTGATTTAATATGAAATAAATAATAATATTT
* * **
2435941 GATGAATTTTAAAAATTAAAAACCAAGAAAAATCCGT-TTGAAAAAATTTACGAAGTAGAAAACT
1 TATGAATTTTAAAAATTTAAAACCAAGAAAAATCC-TCCCGAAAAAATTTACGAAGTAGAAAA-T
* * * * * *
2436005 TCATATTTAGGAAACAATAGAATTTCAAGGAAAAAAATTCAAAAACACATAAAAATCAATGCATA
64 TCATATTTTGGAAACAATAGAATTTCAAGG-AAAAAA-TGAAAAACTCATGAAAATGAATGAAT-
* * *
2436070 TCTG-AAACATAATTTAATATGAATTAAATAAT-ATTTTCT
126 TCTGAAAAC-TGATTTAATATGAAATAAATAATAATATT-T
* * * * * *
2436109 TATGAATTTTAAAAATTTTAAACCCATG-AAAGTCCTCCCGAAAAATTTTACGGAGAAGAAAATT
1 TATGAATTTTAAAAA-TTTAAAACCAAGAAAAATCCTCCCGAAAAAATTTACGAAGTAGAAAATT
2436173 TCGTAATTTG
Statistics
Matches: 330, Mismatches: 49, Indels: 37
0.79 0.12 0.09
Matches are distributed among these distances:
163 7 0.02
164 45 0.14
165 11 0.03
166 37 0.11
167 131 0.40
168 87 0.26
169 12 0.04
ACGTcount: A:0.50, C:0.09, G:0.11, T:0.30
Consensus pattern (164 bp):
TATGAATTTTAAAAATTTAAAACCAAGAAAAATCCTCCCGAAAAAATTTACGAAGTAGAAAATTC
ATATTTTGGAAACAATAGAATTTCAAGGAAAAAATGAAAAACTCATGAAAATGAATGAATTCTGA
AAACTGATTTAATATGAAATAAATAATAATATTT
Found at i:2436247 original size:335 final size:330
Alignment explanation
Indices: 2435611--2436285 Score: 688
Period size: 335 Copynumber: 2.0 Consensus size: 330
2435601 ACAAAGTTAT
** * *
2435611 ATGAATTTTAAAAATTTTAAATCAAGAAAAAACCTCTCGAAAAAATTTATAAAGTAGAAAATTCA
1 ATGAATTTTAAAAATTAAAAACCAAGAAAAAACCTCTCGAAAAAATTTACAAAGTAGAAAATTCA
* * * * * * * * *
2435676 GTTTTTTGGAAAAAGTAAATTTCAAGAAAAAATGAGAAACTCATGAAAATGAATGAATTTTTGAA
66 GTATTTAGGAAAAAGTAAATTTCAAGAAAAAATCAAAAACACATAAAAATCAATGAATATCTGAA
* *
2435741 AACTGATTTAATATGAAATAATTAATAATATTTTATGAATTTTAAAAATTAAGAACCAAGAAAAA
131 AACTAATTTAATATGAAATAAATAATAATATTTTATGAATTTTAAAAATTAAGAACCAAGAAAAA
* * * * * *
2435806 TCTCCCAAAAAAAATTTACGGAGTATAAAATTTTCTTATTTTGGAAACAGAGAAATTTCAAGGAA
196 TCTCCCAAAAAAAATTTACGGAGAAGAAAATTTTCGTAATTTGAAAAAAGAGAAATTTCAA-GAA
* ** * * * *
2435871 AAAATGAAAAACTCATGAAAATGAATGAATTCTTGAAAACTGAGTTAAAATGAAGTAAATAATAA
260 AAAATCAAAAACTCAAAAAAATAAAAGAATTCTTCAAAACTGAGTTAAAAGGAAGTAAATAATAA
2435936 TATTTG
325 TATTTG
* * *
2435942 ATGAATTTTAAAAATTAAAAACCAAGAAAAATCCGT-TTGAAAAAATTTACGAAGTAGAAAACTT
1 ATGAATTTTAAAAATTAAAAACCAAGAAAAAACC-TCTCGAAAAAATTTACAAAGTAGAAAA-TT
*
2436006 CA-TATTTAGGAAACAA-TAGAATTTCAAGGAAAAAAATTCAAAAACACATAAAAATCAATGCAT
64 CAGTATTTAGGAAA-AAGTA-AATTTCAA-G-AAAAAA-TCAAAAACACATAAAAATCAATGAAT
* *
2436069 ATCTG-AAACATAATTTAATATGAATTAAATAAT-ATTTTCTTATGAATTTTAAAAATTTTAA-A
124 ATCTGAAAAC-TAATTTAATATGAAATAAATAATAATATT-TTATGAATTTTAAAAA--TTAAGA
* * * * *
2436131 CCCATG-AAAGTCCTCCC-GAAAAATTTTACGGAGAAGAAAA-TTTCGTAATTTGAAAATAAGAG
185 ACCAAGAAAAAT-CTCCCAAAAAAAATTTACGGAGAAGAAAATTTTCGTAATTTGAAAA-AAGAG
* * * * **
2436193 AAATTTCAA-AAGAAAGTCAATAACTCAAAAAAATAAAAGAAAATT-TTCAAAACTGATTTGATG
248 AAATTTCAAGAA-AAAATCAAAAACTCAAAAAAATAAAAG--AATTCTTCAAAACTGAGTTAAAA
* *
2436256 GGGATTAAATAATAATATTTG
310 GGAAGTAAATAATAATATTTG
*
2436277 AAGAATTTT
1 ATGAATTTT
2436286 GATGTTTAAA
Statistics
Matches: 280, Mismatches: 48, Indels: 28
0.79 0.13 0.08
Matches are distributed among these distances:
331 63 0.22
332 15 0.05
333 3 0.01
334 47 0.17
335 134 0.48
336 14 0.05
337 4 0.01
ACGTcount: A:0.50, C:0.08, G:0.12, T:0.30
Consensus pattern (330 bp):
ATGAATTTTAAAAATTAAAAACCAAGAAAAAACCTCTCGAAAAAATTTACAAAGTAGAAAATTCA
GTATTTAGGAAAAAGTAAATTTCAAGAAAAAATCAAAAACACATAAAAATCAATGAATATCTGAA
AACTAATTTAATATGAAATAAATAATAATATTTTATGAATTTTAAAAATTAAGAACCAAGAAAAA
TCTCCCAAAAAAAATTTACGGAGAAGAAAATTTTCGTAATTTGAAAAAAGAGAAATTTCAAGAAA
AAATCAAAAACTCAAAAAAATAAAAGAATTCTTCAAAACTGAGTTAAAAGGAAGTAAATAATAAT
ATTTG
Found at i:2439118 original size:123 final size:123
Alignment explanation
Indices: 2438962--2439207 Score: 438
Period size: 123 Copynumber: 2.0 Consensus size: 123
2438952 AACAATCATC
* * *
2438962 TCATAGTTGCAAGTCATCTGCAATACTACTATTGAACTACAATAAAAGTAGTCATTTAAATATGC
1 TCATAGTTGCAAGTCATCTCCAATACTAATATTGAACTACAATAAAAGTAGTCATTTAAATATAC
2439027 ATTACCTATAGAAAATCCACCAATCATAAAATATGACACTTAAAACTAAAACTACATA
66 ATTACCTATAGAAAATCCACCAATCATAAAATATGACACTTAAAACTAAAACTACATA
*
2439085 TCATAGTTGCAAGTCATCTCCAATGCTAATATTGAACTACAATAAAAGTAGTCATTTAAATATAC
1 TCATAGTTGCAAGTCATCTCCAATACTAATATTGAACTACAATAAAAGTAGTCATTTAAATATAC
* *
2439150 ATTACCTATAGAAAATCGACCAATCATAAAATATGACACTTAAAAGTAAAACTACATA
66 ATTACCTATAGAAAATCCACCAATCATAAAATATGACACTTAAAACTAAAACTACATA
2439208 GATTAATTTC
Statistics
Matches: 117, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
123 117 1.00
ACGTcount: A:0.45, C:0.18, G:0.09, T:0.28
Consensus pattern (123 bp):
TCATAGTTGCAAGTCATCTCCAATACTAATATTGAACTACAATAAAAGTAGTCATTTAAATATAC
ATTACCTATAGAAAATCCACCAATCATAAAATATGACACTTAAAACTAAAACTACATA
Found at i:2441545 original size:48 final size:45
Alignment explanation
Indices: 2441476--2441581 Score: 110
Period size: 44 Copynumber: 2.3 Consensus size: 45
2441466 TATTAATAAT
* * *
2441476 TTTATATT-AAAATGTATATATATATAAAATAAATAATTAAAAATTATA
1 TTTATATTAAAAATGAAAATATATAT-AAACAAAT-A--AAAAATTATA
*
2441524 TTTATATTAAAAAT-AAAATATATATCAACAAATAAAAAATTATA
1 TTTATATTAAAAATGAAAATATATATAAACAAATAAAAAATTATA
2441568 TTTAT-TTACAAAAT
1 TTTATATTA-AAAAT
2441582 TATTATAATA
Statistics
Matches: 52, Mismatches: 4, Indels: 8
0.81 0.06 0.12
Matches are distributed among these distances:
43 3 0.06
44 20 0.38
46 1 0.02
47 6 0.12
48 17 0.33
49 5 0.10
ACGTcount: A:0.57, C:0.03, G:0.01, T:0.40
Consensus pattern (45 bp):
TTTATATTAAAAATGAAAATATATATAAACAAATAAAAAATTATA
Found at i:2441547 original size:18 final size:18
Alignment explanation
Indices: 2441499--2441560 Score: 61
Period size: 18 Copynumber: 3.3 Consensus size: 18
2441489 GTATATATAT
*
2441499 ATAAAATAAATAATTAAAA
1 ATAAAATATAT-ATTAAAA
* * *
2441518 ATTATATTTATATTAAAA
1 ATAAAATATATATTAAAA
*
2441536 ATAAAATATATATCAACAA
1 ATAAAATATATATTAA-AA
2441555 ATAAAA
1 ATAAAA
2441561 AATTATATTT
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
18 19 0.56
19 15 0.44
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (18 bp):
ATAAAATATATATTAAAA
Found at i:2441567 original size:20 final size:19
Alignment explanation
Indices: 2441525--2441568 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
2441515 AAAATTATAT
* *
2441525 TTATATTAAAAATAAAATA
1 TTATATCAAAAATAAAAAA
2441544 -TATATCAACAAATAAAAAA
1 TTATATCAA-AAATAAAAAA
2441563 TTATAT
1 TTATAT
2441569 TTATTTACAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
18 7 0.33
19 9 0.43
20 5 0.24
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (19 bp):
TTATATCAAAAATAAAAAA
Found at i:2441578 original size:24 final size:23
Alignment explanation
Indices: 2441514--2441580 Score: 61
Period size: 22 Copynumber: 3.0 Consensus size: 23
2441504 ATAAATAATT
2441514 AAAAATTATATTTATATTA-AAAA
1 AAAAATTATATTTAT-TTACAAAA
* **
2441537 TAAAA-TATA--TATCAACAAATA
1 AAAAATTATATTTATTTACAAA-A
2441558 AAAAATTATATTTATTTACAAAA
1 AAAAATTATATTTATTTACAAAA
2441581 TTATTATAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 10
0.67 0.12 0.20
Matches are distributed among these distances:
19 1 0.03
20 6 0.18
21 5 0.15
22 8 0.24
23 5 0.15
24 8 0.24
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (23 bp):
AAAAATTATATTTATTTACAAAA
Found at i:2442063 original size:3 final size:3
Alignment explanation
Indices: 2442055--2442081 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
2442045 TTCTCACTTC
2442055 AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT
2442082 TTTGTTGCCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:2447449 original size:21 final size:21
Alignment explanation
Indices: 2447423--2447469 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
2447413 TGATAAAATT
2447423 ACTTCTTTACCACCAACAACA
1 ACTTCTTTACCACCAACAACA
* * *
2447444 ACTTCTTTACCATCAGCAATA
1 ACTTCTTTACCACCAACAACA
2447465 ACTTC
1 ACTTC
2447470 ATTGTCTTTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.34, C:0.34, G:0.02, T:0.30
Consensus pattern (21 bp):
ACTTCTTTACCACCAACAACA
Found at i:2448480 original size:2 final size:2
Alignment explanation
Indices: 2448461--2448509 Score: 50
Period size: 2 Copynumber: 26.0 Consensus size: 2
2448451 ACATATACAT
* * *
2448461 TA TA T- TA TA T- TT TA TA TA TA AA TA AA TA TA -A TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
2448500 TA TA TA TA TA
1 TA TA TA TA TA
2448510 GAGAGAGAGA
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
1 3 0.08
2 36 0.92
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:2448496 original size:17 final size:17
Alignment explanation
Indices: 2448474--2448507 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
2448464 ATTATATTTT
2448474 ATATATAAATAAATATA
1 ATATATAAATAAATATA
* *
2448491 ATATATATATATATATA
1 ATATATAAATAAATATA
2448508 TAGAGAGAGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
ATATATAAATAAATATA
Found at i:2448514 original size:2 final size:2
Alignment explanation
Indices: 2448509--2448533 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
2448499 ATATATATAT
2448509 AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG A
2448534 CAACACATCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:2449075 original size:32 final size:32
Alignment explanation
Indices: 2449034--2449094 Score: 122
Period size: 32 Copynumber: 1.9 Consensus size: 32
2449024 GAGTTAGTCG
2449034 TTTAGCAATAAACTGATAAGAAATCTGAGCCT
1 TTTAGCAATAAACTGATAAGAAATCTGAGCCT
2449066 TTTAGCAATAAACTGATAAGAAATCTGAG
1 TTTAGCAATAAACTGATAAGAAATCTGAG
2449095 ATGAAAAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.43, C:0.13, G:0.16, T:0.28
Consensus pattern (32 bp):
TTTAGCAATAAACTGATAAGAAATCTGAGCCT
Found at i:2452131 original size:15 final size:15
Alignment explanation
Indices: 2452111--2452142 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
2452101 ATCACAATGA
2452111 AACTCAAAAATATCT
1 AACTCAAAAATATCT
*
2452126 AACTCAAAGATATCT
1 AACTCAAAAATATCT
2452141 AA
1 AA
2452143 TCTTGGGGAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.53, C:0.19, G:0.03, T:0.25
Consensus pattern (15 bp):
AACTCAAAAATATCT
Found at i:2457260 original size:2 final size:2
Alignment explanation
Indices: 2457255--2457289 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
2457245 ATATGCATAC
2457255 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
2457290 GACACACACT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:2457939 original size:23 final size:23
Alignment explanation
Indices: 2457913--2457987 Score: 71
Period size: 25 Copynumber: 3.1 Consensus size: 23
2457903 TATAACATAA
2457913 ATAATTAAATAAATTTAATTTTT
1 ATAATTAAATAAATTTAATTTTT
*
2457936 ATAAATATAAATATATTTAA-TTTT
1 AT-AAT-TAAATAAATTTAATTTTT
* * *
2457960 AAAATTTAAATAAAATATAATTTAT
1 ATAA-TTAAAT-AAATTTAATTTTT
2457985 ATA
1 ATA
2457988 TTTATCACAT
Statistics
Matches: 41, Mismatches: 6, Indels: 8
0.75 0.11 0.15
Matches are distributed among these distances:
23 9 0.22
24 15 0.37
25 17 0.41
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (23 bp):
ATAATTAAATAAATTTAATTTTT
Found at i:2458025 original size:15 final size:16
Alignment explanation
Indices: 2458004--2458045 Score: 61
Period size: 15 Copynumber: 2.8 Consensus size: 16
2457994 ACATAATATG
2458004 ATAAAATTAATATTAT
1 ATAAAATTAATATTAT
2458020 -TAAAATTAAT-TTAT
1 ATAAAATTAATATTAT
*
2458034 ATAAATTTAATA
1 ATAAAATTAATA
2458046 CAAAACAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 4 0.17
15 19 0.83
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
ATAAAATTAATATTAT
Found at i:2460561 original size:15 final size:15
Alignment explanation
Indices: 2460541--2460583 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
2460531 CGTCAAGTAT
2460541 TTTATAAATTTTAT-A
1 TTTAT-AATTTTATCA
2460556 TTTAT-ATTTTATCA
1 TTTATAATTTTATCA
2460570 TGTTATAATTTTAT
1 T-TTATAATTTTAT
2460584 TTAAATATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
13 7 0.28
14 2 0.08
15 9 0.36
16 7 0.28
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (15 bp):
TTTATAATTTTATCA
Found at i:2461022 original size:34 final size:35
Alignment explanation
Indices: 2460966--2461076 Score: 97
Period size: 34 Copynumber: 3.1 Consensus size: 35
2460956 TTCGATTTGT
*
2460966 TATTTAAATTTAAATTATTATTTATTTTTATTAAAAA
1 TATTTAAA--TAAATTAATATTTATTTTTATTAAAAA
*
2461003 TATTTAAA-AAATTAATATTTATATATTT-TATAATTAA
1 TATTTAAATAAATTAATATTTAT-T-TTTAT-TAA-AAA
*
2461040 -ATTTAAATAAA--AATATATTATTTTAATTAAAAA
1 TATTTAAATAAATTAATAT-TTATTTTTATTAAAAA
2461073 TATT
1 TATT
2461077 ATTCTAAACT
Statistics
Matches: 62, Mismatches: 4, Indels: 19
0.73 0.05 0.22
Matches are distributed among these distances:
33 2 0.03
34 21 0.34
35 9 0.15
36 17 0.27
37 13 0.21
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (35 bp):
TATTTAAATAAATTAATATTTATTTTTATTAAAAA
Found at i:2461582 original size:25 final size:27
Alignment explanation
Indices: 2461554--2461609 Score: 71
Period size: 25 Copynumber: 2.1 Consensus size: 27
2461544 TTAGTTGGCT
* *
2461554 TTAAGAATTAATAATTT-TTAT-AATA
1 TTAAAAATTAATAATTTATGATAAATA
*
2461579 TTAAAAATTAATAGTTTATGATAAATA
1 TTAAAAATTAATAATTTATGATAAATA
2461606 TTAA
1 TTAA
2461610 TATTAAGAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 15 0.58
26 3 0.12
27 8 0.31
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (27 bp):
TTAAAAATTAATAATTTATGATAAATA
Found at i:2461653 original size:13 final size:14
Alignment explanation
Indices: 2461629--2461763 Score: 66
Period size: 15 Copynumber: 9.5 Consensus size: 14
2461619 CTATATATCA
2461629 TTAAACTATTAAT-T
1 TTAAA-TATTAATAT
2461643 TTAAATATTAATAT
1 TTAAATATTAATAT
*
2461657 TTCAAATAGTAATAGT
1 TT-AAATATTAATA-T
* *
2461673 TTCAATAATAATAT
1 TTAAATATTAATAT
* *
2461687 TTAAA-ACTAAAAT
1 TTAAATATTAATAT
*
2461700 TT-TATATTAATA-
1 TTAAATATTAATAT
*
2461712 CTAAATACTTAA-A-
1 TTAAATA-TTAATAT
*
2461725 TTAATACTATTTATTAT
1 TTAA-A-TA-TTAATAT
*
2461742 TAAAATATTAATTAT
1 TTAAATATTAA-TAT
*
2461757 ATAAATA
1 TTAAATA
2461764 CTTTAAAATA
Statistics
Matches: 92, Mismatches: 18, Indels: 21
0.70 0.14 0.16
Matches are distributed among these distances:
12 2 0.02
13 27 0.29
14 21 0.23
15 34 0.37
16 5 0.05
17 3 0.03
ACGTcount: A:0.49, C:0.05, G:0.01, T:0.44
Consensus pattern (14 bp):
TTAAATATTAATAT
Found at i:2461736 original size:48 final size:45
Alignment explanation
Indices: 2461678--2461766 Score: 106
Period size: 48 Copynumber: 1.9 Consensus size: 45
2461668 ATAGTTTCAA
*
2461678 TAATAATATTTAAAACTAAAATTTTATATTAATACTAAATACTTAAAT
1 TAATAATATTTAAAACTAAAATATTA-ATT-ATA-TAAATACTTAAAT
* ** *
2461726 TAATACTATTTATTATTAAAATATTAATTATATAAATACTT
1 TAATAATATTTAAAACTAAAATATTAATTATATAAATACTT
2461767 TAAAATATTA
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
45 9 0.25
46 3 0.08
47 3 0.08
48 21 0.58
ACGTcount: A:0.49, C:0.06, G:0.00, T:0.45
Consensus pattern (45 bp):
TAATAATATTTAAAACTAAAATATTAATTATATAAATACTTAAAT
Found at i:2461764 original size:45 final size:48
Alignment explanation
Indices: 2461694--2461797 Score: 117
Period size: 45 Copynumber: 2.2 Consensus size: 48
2461684 TATTTAAAAC
* * * *
2461694 TAAAATTTTATATTAATACTAAATAC-TTAAATTAATACTATTTATTAT
1 TAAAATATTATATTAATACTAAATACTTTAAAATAATA-TACTAATTAT
*
2461742 TAAAATATTA-ATT-ATA-TAAATACTTTAAAATATTATACTAATTAT
1 TAAAATATTATATTAATACTAAATACTTTAAAATAATATACTAATTAT
*
2461787 TAAAATTTTAT
1 TAAAATATTAT
2461798 TTCTATTAAT
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
45 24 0.50
46 12 0.25
47 3 0.06
48 9 0.19
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.47
Consensus pattern (48 bp):
TAAAATATTATATTAATACTAAATACTTTAAAATAATATACTAATTAT
Found at i:2461780 original size:48 final size:48
Alignment explanation
Indices: 2461694--2461788 Score: 115
Period size: 48 Copynumber: 2.0 Consensus size: 48
2461684 TATTTAAAAC
* *
2461694 TAAAATTTTATATTAATACTAAATACTTAAATTAATACTATTTATTAT
1 TAAAATATTATATTAATACTAAATACTTAAATTAATACTAATTATTAT
*
2461742 TAAAATATTA-ATT-ATA-TAAATACTTTAAAATATTATACTAATTATTA
1 TAAAATATTATATTAATACTAAATAC-TT-AAAT-TAATACTAATTATTA
2461789 AAATTTTATT
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
45 7 0.17
46 5 0.12
47 7 0.17
48 22 0.54
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.46
Consensus pattern (48 bp):
TAAAATATTATATTAATACTAAATACTTAAATTAATACTAATTATTAT
Found at i:2468582 original size:27 final size:27
Alignment explanation
Indices: 2468530--2468582 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
2468520 TCTAAGAGGG
* *
2468530 TATCAATGTTTTAAATTTCTTTGCTAT
1 TATCAATGCTTTAAATTTCTTGGCTAT
* *
2468557 TATCAATGCTTTAACTTTGTTGGCTA
1 TATCAATGCTTTAAATTTCTTGGCTA
2468583 AGGGTTATGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.25, C:0.13, G:0.11, T:0.51
Consensus pattern (27 bp):
TATCAATGCTTTAAATTTCTTGGCTAT
Found at i:2469438 original size:21 final size:21
Alignment explanation
Indices: 2469414--2469460 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 21
2469404 AAATTAATTT
2469414 TTAAAATA-ATT-ATGTTAGAAA
1 TTAAAATATATTAATG-TA-AAA
*
2469435 TTAAGATATATTAATGTAAAA
1 TTAAAATATATTAATGTAAAA
2469456 TTAAA
1 TTAAA
2469461 TTTCTATTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
21 14 0.64
22 5 0.23
23 3 0.14
ACGTcount: A:0.53, C:0.00, G:0.09, T:0.38
Consensus pattern (21 bp):
TTAAAATATATTAATGTAAAA
Found at i:2471744 original size:81 final size:82
Alignment explanation
Indices: 2471544--2471764 Score: 261
Period size: 83 Copynumber: 2.7 Consensus size: 82
2471534 GTAAATGATA
* * * * *
2471544 TATTAATTTTAATGAATGAGATAAAATTAATTGATAATAATTTTTATATTAT-AAATCATGAATG
1 TATTAAATTCAATAAATGAGATAAAATTAATTGGTAATAATTTTTATATTGTGAAA--ATGAATG
2471608 AGATAAAATTAATATATGG
64 AGATAAAATTAATATATGG
* * * *
2471627 TATTAAATTCAA-AGAATGAGATAAAATTAATAGGTAATAGTTTTTTTATTGTGAAAAGTGAATT
1 TATTAAATTCAATA-AATGAGATAAAATTAATTGGTAATAATTTTTATATTGTGAAAA-TGAATG
* * *
2471691 ATATAAAA-TATTATAT-T
64 AGATAAAATTAATATATGG
*
2471708 TATTAAATTCAATAAATGAGATAAAATTAGTTGGTAATAATTTTTATATTGTGAAAA
1 TATTAAATTCAATAAATGAGATAAAATTAATTGGTAATAATTTTTATATTGTGAAAA
2471765 AAAACTTATA
Statistics
Matches: 118, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
81 51 0.43
82 9 0.08
83 55 0.47
84 3 0.03
ACGTcount: A:0.46, C:0.01, G:0.12, T:0.41
Consensus pattern (82 bp):
TATTAAATTCAATAAATGAGATAAAATTAATTGGTAATAATTTTTATATTGTGAAAATGAATGAG
ATAAAATTAATATATGG
Found at i:2471774 original size:81 final size:81
Alignment explanation
Indices: 2471544--2471781 Score: 259
Period size: 81 Copynumber: 2.9 Consensus size: 81
2471534 GTAAATGATA
* * * * * *
2471544 TATTAATTTTAATGAATGAGATAAAATTAATTGATAATAATTTTTATATTAT-AAATCATGAATG
1 TATTAAATTCAATAAATGAGATAAAATTAATTGGTAATAATTTTTATATTGTGAAA--ATGAATT
* *
2471608 AGATAAAATTAATATATGG
64 ATATAAAA-TATTATATGG
* * *
2471627 TATTAAATTCAA-AGAATGAGATAAAATTAATAGGTAATAGTTTTTTTATTGTGAAAAGTGAATT
1 TATTAAATTCAATA-AATGAGATAAAATTAATTGGTAATAATTTTTATATTGTGAAAA-TGAATT
*
2471691 ATATAAAATATTATAT-T
64 ATATAAAATATTATATGG
* **
2471708 TATTAAATTCAATAAATGAGATAAAATTAGTTGGTAATAATTTTTATATTGTGAAAAAAAACTTA
1 TATTAAATTCAATAAATGAGATAAAATTAATTGGTAATAATTTTTATATTGTGAAAATGAA-TTA
2471773 TA-AAAATAT
65 TATAAAATAT
2471782 CTTTATTGTT
Statistics
Matches: 132, Mismatches: 18, Indels: 13
0.81 0.11 0.08
Matches are distributed among these distances:
80 9 0.07
81 56 0.42
82 9 0.07
83 55 0.42
84 3 0.02
ACGTcount: A:0.47, C:0.02, G:0.11, T:0.40
Consensus pattern (81 bp):
TATTAAATTCAATAAATGAGATAAAATTAATTGGTAATAATTTTTATATTGTGAAAATGAATTAT
ATAAAATATTATATGG
Found at i:2477070 original size:79 final size:78
Alignment explanation
Indices: 2476936--2477157 Score: 282
Period size: 79 Copynumber: 2.8 Consensus size: 78
2476926 CTTCATCTCA
* ** * * * *
2476936 GGGATACTCCAACTCCTATTTTATTTCCAAAACATTAGTTTTTCATAATCGGGGATACTCTAATC
1 GGGATACTCCAAC-CCGATTTTATTTCCAAAACACCAATTTTTCACAATCGGGGATACTCCAACC
*
2477001 CCGTTATTTCCGAG
65 CCGTCATTTCCGAG
* **
2477015 GGGATACTCCAACCACGATTTTATTCCCAAAACACCAATTTTTCACAATTAGGGATACTCCAACC
1 GGGATACTCCAACC-CGATTTTATTTCCAAAACACCAATTTTTCACAATCGGGGATACTCCAACC
*
2477080 CCGTCATTTCTGAG
65 CCGTCATTTCCGAG
* * *
2477094 GGGATACTCTAACCCTGATTTTATTTCTAAAACACCAATTTTCCACAATCGGGGATACTCCAAC
1 GGGATACTCCAACCC-GATTTTATTTCCAAAACACCAATTTTTCACAATCGGGGATACTCCAAC
2477158 TTCGATTTTA
Statistics
Matches: 123, Mismatches: 18, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
78 2 0.02
79 121 0.98
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.32
Consensus pattern (78 bp):
GGGATACTCCAACCCGATTTTATTTCCAAAACACCAATTTTTCACAATCGGGGATACTCCAACCC
CGTCATTTCCGAG
Found at i:2477169 original size:51 final size:51
Alignment explanation
Indices: 2477093--2477259 Score: 264
Period size: 51 Copynumber: 3.3 Consensus size: 51
2477083 TCATTTCTGA
* *
2477093 GGGGATACTCTAAC-CCTGATTTTATTTCTAAAACACCAATTTTCCACAATC
1 GGGGATACTCCAACTCC-GATTTTATTTCCAAAACACCAATTTTCCACAATC
*
2477144 GGGGATACTCCAACTTCGATTTTATTTCCAAAACACCAATTTTCCACAATC
1 GGGGATACTCCAACTCCGATTTTATTTCCAAAACACCAATTTTCCACAATC
* * *
2477195 GGGGATACTCCAACTCCGATTTTATTTCCAAAACACTAATTTTTCATAATC
1 GGGGATACTCCAACTCCGATTTTATTTCCAAAACACCAATTTTCCACAATC
2477246 GGGGATACTCCAAC
1 GGGGATACTCCAAC
2477260 CCTGTTACGT
Statistics
Matches: 108, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
51 107 0.99
52 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.11, T:0.32
Consensus pattern (51 bp):
GGGGATACTCCAACTCCGATTTTATTTCCAAAACACCAATTTTCCACAATC
Found at i:2477654 original size:21 final size:21
Alignment explanation
Indices: 2477629--2477687 Score: 84
Period size: 20 Copynumber: 2.9 Consensus size: 21
2477619 CACAGTATCG
2477629 ATAAAATGTATCGATACATGA
1 ATAAAATGTATCGATACATGA
* *
2477650 CT-AAATGTATCGATACTTGA
1 ATAAAATGTATCGATACATGA
*
2477670 AAAAAATGTATCGATACA
1 ATAAAATGTATCGATACA
2477688 AGTCATTGGC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
20 17 0.53
21 15 0.47
ACGTcount: A:0.46, C:0.12, G:0.14, T:0.29
Consensus pattern (21 bp):
ATAAAATGTATCGATACATGA
Found at i:2477757 original size:13 final size:13
Alignment explanation
Indices: 2477739--2477763 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2477729 ACACACAGTA
2477739 TGTATCGATACAT
1 TGTATCGATACAT
2477752 TGTATCGATACA
1 TGTATCGATACA
2477764 CCATAAAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2477760 original size:32 final size:33
Alignment explanation
Indices: 2477719--2477786 Score: 102
Period size: 33 Copynumber: 2.1 Consensus size: 33
2477709 GTAGCTAAAC
**
2477719 TTGTATCGATACA-CACAGTATGTATCGATACA
1 TTGTATCGATACACCACAAAATGTATCGATACA
*
2477751 TTGTATCGATACACCATAAAATGTATCGATACA
1 TTGTATCGATACACCACAAAATGTATCGATACA
2477784 TTG
1 TTG
2477787 GCTTGTAACG
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
32 13 0.41
33 19 0.59
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.32
Consensus pattern (33 bp):
TTGTATCGATACACCACAAAATGTATCGATACA
Found at i:2484103 original size:22 final size:21
Alignment explanation
Indices: 2484060--2484100 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
2484050 CAAAATTCTT
2484060 GTTTTTCACTTCAAAATACATC
1 GTTTTTCAC-TCAAAATACATC
2484082 GTTTTTCA-TCAAAAT-CATC
1 GTTTTTCACTCAAAATACATC
2484101 ATCAAAAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.21
20 7 0.37
22 8 0.42
ACGTcount: A:0.32, C:0.22, G:0.05, T:0.41
Consensus pattern (21 bp):
GTTTTTCACTCAAAATACATC
Found at i:2485507 original size:9 final size:9
Alignment explanation
Indices: 2485493--2485520 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
2485483 AACTTTGTCC
2485493 TAGTTCGAG
1 TAGTTCGAG
2485502 TAGTTCGAG
1 TAGTTCGAG
2485511 TAGTTCGAG
1 TAGTTCGAG
2485520 T
1 T
2485521 GATGCGGAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.21, C:0.11, G:0.32, T:0.36
Consensus pattern (9 bp):
TAGTTCGAG
Found at i:2485785 original size:23 final size:19
Alignment explanation
Indices: 2485743--2485780 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
2485733 AATAAATTTT
2485743 TATGATTAAGGGGGAGAAA
1 TATGATTAAGGGGGAGAAA
2485762 TATGATTAAGGGGGAGAAA
1 TATGATTAAGGGGGAGAAA
2485781 GAAATGGTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.37, T:0.21
Consensus pattern (19 bp):
TATGATTAAGGGGGAGAAA
Found at i:2485831 original size:22 final size:21
Alignment explanation
Indices: 2485810--2485849 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
2485800 AGTGTTAAAT
*
2485810 TATTTTACTAAGGGGGAGAAA
1 TATTTGACTAAGGGGGAGAAA
* *
2485831 TGTTTGATTAAGGGGGAGA
1 TATTTGACTAAGGGGGAGA
2485850 GAAAAGAAAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.33, C:0.03, G:0.35, T:0.30
Consensus pattern (21 bp):
TATTTGACTAAGGGGGAGAAA
Found at i:2486428 original size:20 final size:20
Alignment explanation
Indices: 2486398--2486453 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
2486388 CAGTATCAAT
*
2486398 AAAATGTATCGATACATGAC
1 AAAATGTATCGATACATGAA
* * *
2486418 TAAATGCATCGATACTTGAA
1 AAAATGTATCGATACATGAA
2486438 AAAATGTATCGATACA
1 AAAATGTATCGATACA
2486454 AGTCATTGGC
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.45, C:0.14, G:0.14, T:0.27
Consensus pattern (20 bp):
AAAATGTATCGATACATGAA
Found at i:2486523 original size:13 final size:13
Alignment explanation
Indices: 2486505--2486529 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2486495 ACACACAGTA
2486505 TGTATCGATACAT
1 TGTATCGATACAT
2486518 TGTATCGATACA
1 TGTATCGATACA
2486530 CCATAAAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2486526 original size:32 final size:33
Alignment explanation
Indices: 2486480--2486552 Score: 103
Period size: 33 Copynumber: 2.2 Consensus size: 33
2486470 TGGCAGTAGC
**
2486480 TACACTTGTATCGATACA-CACAGTATGTATCGA
1 TACA-TTGTATCGATACACCACAAAATGTATCGA
*
2486513 TACATTGTATCGATACACCATAAAATGTATCGA
1 TACATTGTATCGATACACCACAAAATGTATCGA
2486546 TACATTG
1 TACATTG
2486553 GCTTGTAACG
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
32 13 0.36
33 23 0.64
ACGTcount: A:0.36, C:0.19, G:0.14, T:0.32
Consensus pattern (33 bp):
TACATTGTATCGATACACCACAAAATGTATCGA
Found at i:2487451 original size:28 final size:28
Alignment explanation
Indices: 2487390--2487460 Score: 92
Period size: 28 Copynumber: 2.5 Consensus size: 28
2487380 TTTTACAATC
*
2487390 AGGGATACTCCGACCCCGTTATTTAATCG
1 AGGGATACTCCAACCCCGTTATTT-ATCG
*
2487419 A-GGATACTCCAACCCCGTTATTT-TTG
1 AGGGATACTCCAACCCCGTTATTTATCG
2487445 AGGGGATACTCCAACC
1 A-GGGATACTCCAACC
2487461 TCGACTTTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
26 3 0.08
28 34 0.89
29 1 0.03
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (28 bp):
AGGGATACTCCAACCCCGTTATTTATCG
Found at i:2487503 original size:79 final size:79
Alignment explanation
Indices: 2487414--2487598 Score: 205
Period size: 79 Copynumber: 2.3 Consensus size: 79
2487404 CCCGTTATTT
* * * *
2487414 AATCGAGGATACTCCAACCCCGTTATTTTTGAGGGGATACTCCAA-CCTCGACTTTA-TTTCTAA
1 AATCGGGGATACTCCAACCCCGTTATTTTCGAGAGGATACTCCAATCC-CAACTTTATTTTC-AA
* **
2487477 AATATTGA-TTTCTCAC
64 AACACCGATTTTCT-AC
* * * *
2487493 AATCGGGGATACTCCAACCCCATTATTTTCGCGAGGATACTCTAATCCCAATTTTATTTTCAAAA
1 AATCGGGGATACTCCAACCCCGTTATTTTCGAGAGGATACTCCAATCCCAACTTTATTTTCAAAA
*
2487558 CACCGATTTTCTAT
66 CACCGATTTTCTAC
*
2487572 AATCGGGGATACTCCAGCCCCGTTATT
1 AATCGGGGATACTCCAACCCCGTTATT
2487599 ATCTCCAAAA
Statistics
Matches: 89, Mismatches: 14, Indels: 6
0.82 0.13 0.06
Matches are distributed among these distances:
79 78 0.88
80 11 0.12
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (79 bp):
AATCGGGGATACTCCAACCCCGTTATTTTCGAGAGGATACTCCAATCCCAACTTTATTTTCAAAA
CACCGATTTTCTAC
Found at i:2487528 original size:107 final size:107
Alignment explanation
Indices: 2487339--2487534 Score: 250
Period size: 107 Copynumber: 1.8 Consensus size: 107
2487329 TTTCACAATC
* * * * *
2487339 GGGGATACTCTAACTCCGATTTTATTTCCAAAACATCAATTTTTTACAATCAGGGATACTCCGAC
1 GGGGATACTCCAACTCCGACTTTATTTCCAAAACATCAATTTCTCACAATCAGGGATACTCCAAC
* *
2487404 CCCGTTATTTAATCGAGGATACTCCAACCCCGTTATTTTTGA
66 CCCATTATTTAAGCGAGGATACTCCAACCCCGTTATTTTTGA
* * ** *
2487446 GGGGATACTCCAAC-CTCGACTTTATTTCTAAAATATTGATTTCTCACAATCGGGGATACTCCAA
1 GGGGATACTCCAACTC-CGACTTTATTTCCAAAACATCAATTTCTCACAATCAGGGATACTCCAA
**
2487510 CCCCATTATTTTCGCGAGGATACTC
65 CCCCATTATTTAAGCGAGGATACTC
2487535 TAATCCCAAT
Statistics
Matches: 74, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
106 1 0.01
107 73 0.99
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.33
Consensus pattern (107 bp):
GGGGATACTCCAACTCCGACTTTATTTCCAAAACATCAATTTCTCACAATCAGGGATACTCCAAC
CCCATTATTTAAGCGAGGATACTCCAACCCCGTTATTTTTGA
Found at i:2490352 original size:18 final size:18
Alignment explanation
Indices: 2490314--2490355 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
2490304 ATTTTTTCTC
*
2490314 CTTT-TTTTTCTCTTTTT
1 CTTTCTTTTTCTCTTTTA
2490331 CTTTCTTTTTC-CTCTTTA
1 CTTTCTTTTTCTCT-TTTA
2490349 CTTTCTT
1 CTTTCTT
2490356 CCTATCAGCT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 6 0.27
18 16 0.73
ACGTcount: A:0.02, C:0.24, G:0.00, T:0.74
Consensus pattern (18 bp):
CTTTCTTTTTCTCTTTTA
Found at i:2491083 original size:164 final size:165
Alignment explanation
Indices: 2490724--2491101 Score: 505
Period size: 165 Copynumber: 2.3 Consensus size: 165
2490714 ATGGGAGTTT
* * * ** * * *
2490724 AATAACAATATTAGATAAATTTTAAAAATTTTAAACCAAGAAAAATTCC-CCCGAAACCATTTAT
1 AATAATAATATTTGATGAATTTTAAAAATTAAAAACTAAGAAAAA-TCCTCCCAAAAACATTTAT
* * *
2490788 GAAATAGAAAATTCTATTTTTCGAAAACAAAAAAATTTTAAAGAAAAAATTCAAAACTTATGAAA
65 GAAATAAAAAATTCTATTTTTCGAAAACAAAAAAATTTTAAAGAAAAAATTAAAAACTCATGAAA
* * *
2490853 ATAAATGAATTTTTAAAAATTGATTTATTATAATTA
130 ATAAATGAATTTTTAAAAACTAATTTAATATAATTA
2490889 AATAATAATATTTGATGAATTTTAAAAATTAAAAACTAAGAAAAATCCTCCCAAAAACATTTATG
1 AATAATAATATTTGATGAATTTTAAAAATTAAAAACTAAGAAAAATCCTCCCAAAAACATTTATG
* * * * *
2490954 GAGTAAAAAACTTCGTA-TTTT-GGAAACAAAAGAA-TTTCAA-AAAAAATTAAAAACTCATGAA
66 AAATAAAAAA-TTC-TATTTTTCGAAAACAAAAAAATTTTAAAGAAAAAATTAAAAACTCATGAA
*
2491015 AATAAATGAATTTTTGAAAACTAATTTAATATAAATTA
129 AATAAATGAATTTTTAAAAACTAATTTAATAT-AATTA
2491053 AATAATAATATTTGATGAATTTTAAAAATTAAAAACTAAGAAAAATCCT
1 AATAATAATATTTGATGAATTTTAAAAATTAAAAACTAAGAAAAATCCT
2491102 TCTAAAAATA
Statistics
Matches: 189, Mismatches: 20, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
163 47 0.25
164 62 0.33
165 71 0.38
166 7 0.04
167 2 0.01
ACGTcount: A:0.53, C:0.08, G:0.07, T:0.32
Consensus pattern (165 bp):
AATAATAATATTTGATGAATTTTAAAAATTAAAAACTAAGAAAAATCCTCCCAAAAACATTTATG
AAATAAAAAATTCTATTTTTCGAAAACAAAAAAATTTTAAAGAAAAAATTAAAAACTCATGAAAA
TAAATGAATTTTTAAAAACTAATTTAATATAATTA
Found at i:2493881 original size:21 final size:22
Alignment explanation
Indices: 2493833--2493875 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
2493823 AATAAAACGT
2493833 AAAAAATGAAAAAAATCAAATA
1 AAAAAATGAAAAAAATCAAATA
*
2493855 AAAAAAT-AAAAATATCAAATA
1 AAAAAATGAAAAAAATCAAATA
2493876 TCAAAAAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.77, C:0.05, G:0.02, T:0.16
Consensus pattern (22 bp):
AAAAAATGAAAAAAATCAAATA
Found at i:2495703 original size:80 final size:80
Alignment explanation
Indices: 2495469--2495783 Score: 359
Period size: 80 Copynumber: 4.0 Consensus size: 80
2495459 GTTTCTTTGA
* * * * * ** * *
2495469 AAATAACGGGGCTAGAGTATCCCCGGTTGTGAGAAA-TCG-ATGCTTAGAAAAAAAATCGG-GAT
1 AAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGAG-T
*
2495531 TGGAGTATCCCCTCGA
65 TGGAGTATCCCCTCGG
* * * *** * ** *
2495547 AAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATA-TTTTGGGAATAAAGCCGGGGTT
1 AAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGAGTT
2495611 GGAGTATCCCCTCGG
66 GGAGTATCCCCTCGG
* * *
2495626 AAGTAACGGGGTTGGAGTATCCTCGACTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGAGTT
1 AAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGAGTT
2495691 GGAGTATCCCCTCGG
66 GGAGTATCCCCTCGG
*
2495706 AAATAACGGGGTTGGAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTTGGAAATAAAATCGGAG
1 AAATAACGGGGTTGGAGTATCCCCGATTGTGAA-AAATTGGT-ATTTTTGGAAATAAAATCGGAG
2495771 TTGGAGTATCCCC
64 TTGGAGTATCCCC
2495784 GATTATAGAA
Statistics
Matches: 198, Mismatches: 33, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
78 31 0.16
79 60 0.30
80 65 0.33
81 8 0.04
82 34 0.17
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.26
Consensus pattern (80 bp):
AAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGAGTT
GGAGTATCCCCTCGG
Found at i:2495831 original size:51 final size:50
Alignment explanation
Indices: 2495716--2495886 Score: 184
Period size: 51 Copynumber: 3.3 Consensus size: 50
2495706 AAATAACGGG
* * *
2495716 GTTGGAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAA-AAATTAGTG---TTTGAAAATAAAACCGGA
*
2495770 GTTGGAGTATCCCCGATTAT-AGAAAATTAGTGTCTTGAAAATAAAACCAGGA
1 GTTGGAGTATCCCCGATTGTGA-AAAATTAGTGT-TTGAAAATAAAACC-GGA
* **
2495822 -TTGGAGTATCCCCGATTGTGGAAAAATTAGTGTTTTAGCGATAAAACCGGA
1 GTTGGAGTATCCCCGATTGT-GAAAAATTAGTGTTTGA-AAATAAAACCGGA
2495873 GTTGGAGTATCCCC
1 GTTGGAGTATCCCC
2495887 ACGAAAATAA
Statistics
Matches: 102, Mismatches: 8, Indels: 16
0.81 0.06 0.13
Matches are distributed among these distances:
50 1 0.01
51 36 0.35
52 35 0.34
53 10 0.10
54 20 0.20
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.30
Consensus pattern (50 bp):
GTTGGAGTATCCCCGATTGTGAAAAATTAGTGTTTGAAAATAAAACCGGA
Found at i:2495878 original size:52 final size:49
Alignment explanation
Indices: 2495716--2495886 Score: 175
Period size: 52 Copynumber: 3.3 Consensus size: 49
2495706 AAATAACGGG
* *
2495716 GTTGGAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAA-AAATTAGTG--TTTTGG--ATAAAACCGGA
* * *
2495770 GTTGGAGTATCCCCGATTAT-AGAAAATTAGTGTCTTGAAAATAAAACCAGGA
1 GTTGGAGTATCCCCGATTGTGA-AAAATTAGTGTTTTG--GATAAAACC-GGA
2495822 -TTGGAGTATCCCCGATTGTGGAAAAATTAGTGTTTTAGCGATAAAACCGGA
1 GTTGGAGTATCCCCGATTGT-GAAAAATTAGTGTTTT-G-GATAAAACCGGA
2495873 GTTGGAGTATCCCC
1 GTTGGAGTATCCCC
2495887 ACGAAAATAA
Statistics
Matches: 100, Mismatches: 9, Indels: 18
0.79 0.07 0.14
Matches are distributed among these distances:
51 32 0.32
52 37 0.37
53 11 0.11
54 20 0.20
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.30
Consensus pattern (49 bp):
GTTGGAGTATCCCCGATTGTGAAAAATTAGTGTTTTGGATAAAACCGGA
Found at i:2495905 original size:28 final size:29
Alignment explanation
Indices: 2495860--2495942 Score: 102
Period size: 27 Copynumber: 3.0 Consensus size: 29
2495850 AGTGTTTTAG
* *
2495860 CGATAAA-ACCGGAGTTGGAGTATCCCCA
1 CGATAAATAACGGGGTTGGAGTATCCCCA
2495888 CGA-AAATAACGGGGTTGGAGTAT-CCC-
1 CGATAAATAACGGGGTTGGAGTATCCCCA
* *
2495914 CGATGATTAACGGGGTTGGAGTATCCCCA
1 CGATAAATAACGGGGTTGGAGTATCCCCA
2495943 ATTGTGAAGA
Statistics
Matches: 47, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
26 3 0.06
27 24 0.51
28 20 0.43
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (29 bp):
CGATAAATAACGGGGTTGGAGTATCCCCA
Found at i:2498439 original size:13 final size:13
Alignment explanation
Indices: 2498421--2498446 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2498411 ACAAAGATCC
2498421 ATGTATCGATACA
1 ATGTATCGATACA
2498434 ATGTATCGATACA
1 ATGTATCGATACA
2498447 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2498442 original size:33 final size:33
Alignment explanation
Indices: 2498400--2498466 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
2498390 AAAATTTCCA
***
2498400 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
2498433 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
2498466 A
1 A
2498467 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:2498510 original size:19 final size:18
Alignment explanation
Indices: 2498486--2498553 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
2498476 CAGTAGCTAA
2498486 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
2498505 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
2498520 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
2498537 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
2498554 TCGTTGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 4 0.09
19 25 0.58
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:2498526 original size:13 final size:13
Alignment explanation
Indices: 2498508--2498532 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2498498 ACAATACTTA
2498508 TGTATCGATACAT
1 TGTATCGATACAT
2498521 TGTATCGATACA
1 TGTATCGATACA
2498533 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2498530 original size:32 final size:32
Alignment explanation
Indices: 2498489--2498551 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
2498479 TAGCTAATTA
*
2498489 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
2498521 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
2498552 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:2499303 original size:55 final size:55
Alignment explanation
Indices: 2499219--2499841 Score: 972
Period size: 55 Copynumber: 11.3 Consensus size: 55
2499209 ATAAACTGTA
* * * * * *
2499219 TCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAA-AGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
2499274 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
* *
2499329 TCCTGCTCTTTGGGGAATGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
*
2499384 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
* *
2499439 TCCTGTTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
* *
2499494 TCCTGCTCTTTGAGGACTGGAAGGCGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
*
2499549 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
2499604 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
* *
2499659 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGGGTGGGCTTTGAA-AGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
* *
2499714 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGTGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
2499769 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
2499824 TCCTGCTCTTTGAGGACT
1 TCCTGCTCTTTGAGGACT
2499842 AAAAAGCGGA
Statistics
Matches: 531, Mismatches: 28, Indels: 18
0.92 0.05 0.03
Matches are distributed among these distances:
54 13 0.02
55 506 0.95
56 12 0.02
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.29
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
Found at i:2499383 original size:29 final size:28
Alignment explanation
Indices: 2499293--2499823 Score: 121
Period size: 28 Copynumber: 19.2 Consensus size: 28
2499283 TTGAGGACTG
2499293 AAAGGTGCCACCAACTTGTGTGGGCTTT
1 AAAGGTGCCACCAACTTGTGTGGGCTTT
** * ** *
2499321 GAAAGGTGTCCTGC-TCTT-TG-GGGAATG
1 -AAAGGTG-CCACCAACTTGTGTGGGCTTT
2499348 AAAGGTGCCACCAACTTGTGTGGGCTTT
1 AAAGGTGCCACCAACTTGTGTGGGCTTT
** * * * **
2499376 AAGAGGTGTCCTGC-TCTT-TGAGGACTGG
1 AA-AGGTG-CCACCAACTTGTGTGGGCTTT
*
2499404 AAA-ATGCCACCAACTTGTGTGGGCTTT
1 AAAGGTGCCACCAACTTGTGTGGGCTTT
**** * * **
2499431 GAAAGGTGTCC-TGTTCTT-TGAGGACTGG
1 -AAAGGTG-CCACCAACTTGTGTGGGCTTT
*
2499459 AAA-ATGCCACCAACTTGTGTGGGCTTT
1 AAAGGTGCCACCAACTTGTGTGGGCTTT
** * * * *
2499486 AAGAGGTGTCCTGC-TCTT-TGAGGAC-TG
1 AA-AGGTG-CCACCAACTTGTGTGGGCTTT
* *
2499513 GAAGGCGCCACCAACTTGTGTGGGCTTT
1 AAAGGTGCCACCAACTTGTGTGGGCTTT
** * *
2499541 AAGAGGTGTCCTGC-TCTT-TG-GGGAC-TG
1 AA-AGGTG-CCACCAACTTGTGTGGG-CTTT
2499568 AAAGGTGCCACCAACTTGTGTGGGCTTT
1 AAAGGTGCCACCAACTTGTGTGGGCTTT
** * * * *
2499596 AAGAGGTGTCCTGC-TCTT-TGAGGAC-TG
1 AA-AGGTG-CCACCAACTTGTGTGGGCTTT
2499623 AAAGGTGCCACCAACTTGTGTGGGCTTT
1 AAAGGTGCCACCAACTTGTGTGGGCTTT
** * * * **
2499651 AAGAGGTGTCCTGC-TCTT-TGAGGACTGG
1 AA-AGGTG-CCACCAACTTGTGTGGGCTTT
* *
2499679 AAA-ATGCCACCAACTTGGGTGGGCTTT
1 AAAGGTGCCACCAACTTGTGTGGGCTTT
** * *
2499706 GAAAGGTGTCCTGC-TCTT-TG-GGGAC-TG
1 -AAAGGTG-CCACCAACTTGTGTGGG-CTTT
2499733 AAAGGTGCCACCAACTTGTGTGGGCTTT
1 AAAGGTGCCACCAACTTGTGTGGGCTTT
* ** * * * *
2499761 AAGTGGTGTCCTGC-TCTT-TGAGGAC-TG
1 AA-AGGTG-CCACCAACTTGTGTGGGCTTT
2499788 AAAGGTGCCACCAACTTGTGTGGGCTTT
1 AAAGGTGCCACCAACTTGTGTGGGCTTT
2499816 AAGAGGTG
1 AA-AGGTG
2499824 TCCTGCTCTT
Statistics
Matches: 331, Mismatches: 122, Indels: 98
0.60 0.22 0.18
Matches are distributed among these distances:
25 26 0.08
26 65 0.20
27 69 0.21
28 77 0.23
29 68 0.21
30 26 0.08
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.29
Consensus pattern (28 bp):
AAAGGTGCCACCAACTTGTGTGGGCTTT
Found at i:2500819 original size:1 final size:1
Alignment explanation
Indices: 2500808--2500901 Score: 98
Period size: 1 Copynumber: 94.0 Consensus size: 1
2500798 CTTAAGCAGA
* * * * * * * *
2500808 TTTTTTCTTTTTCTTTTTTTTTGTTTTGTTTTTTTGTTTTTTTTTGTTTTTTTGTTTTTTTTGTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* *
2500873 TTTTTTGTTTTTTTTTCTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT
2500902 GAAGAGAAGG
Statistics
Matches: 73, Mismatches: 20, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
1 73 1.00
ACGTcount: A:0.00, C:0.03, G:0.07, T:0.89
Consensus pattern (1 bp):
T
Found at i:2515734 original size:16 final size:15
Alignment explanation
Indices: 2515714--2515762 Score: 55
Period size: 16 Copynumber: 3.3 Consensus size: 15
2515704 GTTCTTTTCC
2515714 AAAAAAGAAACAAAA
1 AAAAAAGAAACAAAA
**
2515729 CAAAAAAGATGCAAAA
1 -AAAAAAGAAACAAAA
*
2515745 AAAAAA-AAAGAAAA
1 AAAAAAGAAACAAAA
2515759 AAAA
1 AAAA
2515763 GAACAACCCC
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
14 9 0.32
15 6 0.21
16 13 0.46
ACGTcount: A:0.84, C:0.06, G:0.08, T:0.02
Consensus pattern (15 bp):
AAAAAAGAAACAAAA
Found at i:2515760 original size:27 final size:27
Alignment explanation
Indices: 2515713--2515764 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
2515703 TGTTCTTTTC
* *
2515713 CAAAAAAGAAACAAAACAAAAAAGATG
1 CAAAAAAGAAAAAAAAAAAAAAAGATG
2515740 CAAAAAA-AAAAAAAGAAAAAAAAGA
1 CAAAAAAGAAAAAAA-AAAAAAAAGA
2515765 ACAACCCCTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 6 0.27
27 16 0.73
ACGTcount: A:0.81, C:0.08, G:0.10, T:0.02
Consensus pattern (27 bp):
CAAAAAAGAAAAAAAAAAAAAAAGATG
Found at i:2516745 original size:30 final size:31
Alignment explanation
Indices: 2516708--2516792 Score: 109
Period size: 30 Copynumber: 2.8 Consensus size: 31
2516698 CAAATACCTT
2516708 TTCAAAGTCCACGACTCAGTGGCATTTTGTC
1 TTCAAAGTCCACGACTCAGTGGCATTTTGTC
* *
2516739 -TCAAAGTCCACGACTTAGTGGCATTTTTTC
1 TTCAAAGTCCACGACTCAGTGGCATTTTGTC
* * * *
2516769 TTTAAAGCCCACAACTCTGTGGCA
1 TTCAAAGTCCACGACTCAGTGGCA
2516793 CACTTTTTCT
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
30 28 0.61
31 18 0.39
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.32
Consensus pattern (31 bp):
TTCAAAGTCCACGACTCAGTGGCATTTTGTC
Found at i:2516889 original size:34 final size:35
Alignment explanation
Indices: 2516769--2517138 Score: 403
Period size: 34 Copynumber: 10.9 Consensus size: 35
2516759 GCATTTTTTC
* *
2516769 TTTAAAGCCCACAACTCTGTGGCACACTTTTTCTT
1 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTT
**
2516804 TTTAAAGCCCACAACTTTGTGGCACTCTTTTTCCTT
1 TTTAAAGCCCACAACTCCGTGGCACTCTTTTT-CTT
2516840 TTTCAAAGCCCACAACTCCGTGGCAC-CTTTTTCTT
1 TTT-AAAGCCCACAACTCCGTGGCACTCTTTTTCTT
*
2516875 TTTACAGCCCACAACTCCGTGGCACTCTTTTTCCCTT
1 TTTAAAGCCCACAACTCCGTGGCACTCTTTTT--CTT
*
2516912 GTTAAAGCCCACAACTCCGTGGCAC-C-----C-T
1 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTT
* * * *
2516940 TTT-AAGTCCACGACTACGTGGCACTC-TTTTC-C
1 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTT
* *
2516972 TTTAAAGCCCACAACTACGTGGCACTCTTTTTCCT
1 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTT
* *
2517007 TCT-AAGCCCACAACTCCGTGGCACTCTTTTTCCT
1 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTT
* *
2517041 TCT-AAGCCCACAACTCCGTGGCACTCTTTTTTCCCT
1 TTTAAAGCCCACAACTCCGTGGCACTC-TTTTT-CTT
*
2517077 TTTAAAGCCCACAACTCCGTGGCAC-CTTGTTCTT
1 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTT
* *
2517111 TTT-AAGTCCACAACTTCGTGGCA-TCTTT
1 TTTAAAGCCCACAACTCCGTGGCACTCTTT
2517139 CACCCTTTCT
Statistics
Matches: 295, Mismatches: 23, Indels: 36
0.83 0.06 0.10
Matches are distributed among these distances:
27 18 0.06
28 4 0.01
29 1 0.00
32 4 0.01
33 42 0.14
34 87 0.29
35 53 0.18
36 19 0.06
37 67 0.23
ACGTcount: A:0.20, C:0.33, G:0.13, T:0.34
Consensus pattern (35 bp):
TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTT
Found at i:2516889 original size:71 final size:70
Alignment explanation
Indices: 2516769--2517138 Score: 414
Period size: 71 Copynumber: 5.4 Consensus size: 70
2516759 GCATTTTTTC
* * * **
2516769 TTTAAAGCCCACAACTCTGTGGCACACTTTTTCTTTTTAAAGCCCACAACTTTGTGGCACTCTTT
1 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTT-AAGCCCACAACTCCGTGGCACTCTTT
2516834 TTCCTT
65 TTCCTT
*
2516840 TTTCAAAGCCCACAACTCCGTGGCAC-CTTTTTCTTTTTACAGCCCACAACTCCGTGGCACTCTT
1 TTT-AAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTA-AGCCCACAACTCCGTGGCACTCTT
2516904 TTTCCCTT
64 TTT-CCTT
* * * *
2516912 GTTAAAGCCCACAACTCCGTGGCA--C-----CCTTTTAAGTCCACGACTACGTGGCACTC-TTT
1 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGCCCACAACTCCGTGGCACTCTTTT
2516969 TCC--
66 TCCTT
* *
2516972 TTTAAAGCCCACAACTACGTGGCACTCTTTTTCCTTCTAAGCCCACAACTCCGTGGCACTCTTTT
1 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGCCCACAACTCCGTGGCACTCTTTT
2517037 TCC-T
66 TCCTT
*
2517041 TCT-AAGCCCACAACTCCGTGGCACTCTTTTTTCCCTTTTAAAGCCCACAACTCCGTGGCAC-CT
1 TTTAAAGCCCACAACTCCGTGGCACTC-TTTTT-CCTTTT-AAGCCCACAACTCCGTGGCACTCT
*
2517104 TGTT-CTT
63 TTTTCCTT
* *
2517111 TTT-AAGTCCACAACTTCGTGGCA-TCTTT
1 TTTAAAGCCCACAACTCCGTGGCACTCTTT
2517139 CACCCTTTCT
Statistics
Matches: 262, Mismatches: 21, Indels: 35
0.82 0.07 0.11
Matches are distributed among these distances:
60 22 0.08
62 3 0.01
63 4 0.02
64 19 0.07
65 6 0.02
67 25 0.10
68 31 0.12
69 10 0.04
70 33 0.13
71 82 0.31
72 27 0.10
ACGTcount: A:0.20, C:0.33, G:0.13, T:0.34
Consensus pattern (70 bp):
TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGCCCACAACTCCGTGGCACTCTTTT
TCCTT
Found at i:2516987 original size:131 final size:131
Alignment explanation
Indices: 2516822--2517070 Score: 380
Period size: 131 Copynumber: 1.9 Consensus size: 131
2516812 CCACAACTTT
* * *
2516822 GTGGCACTCTTTTTCCTTTTTCAAAGCCCACAACTCCGTGGCAC-CTTTTTCTTTTTACAGCCCA
1 GTGGCACTCTTTTTCC-TTTTCAAAGCCCACAACTACGTGGCACTCTTTTTCCTTCTA-AGCCCA
*
2516886 CAACTCCGTGGCACTCTTTTTCCCTTGTTAAAGCCCACAACTCCGTGGCACCCTTTTAAGTCCAC
64 CAACTCCGTGGCACTCTTTTT-CCTT-CT-AAGCCCACAACTCCGTGGCACCCTTTTAAGTCCAC
2516951 GACTAC
126 GACTAC
2516957 GTGGCACTC-TTTTCC-TTT-AAAGCCCACAACTACGTGGCACTCTTTTTCCTTCTAAGCCCACA
1 GTGGCACTCTTTTTCCTTTTCAAAGCCCACAACTACGTGGCACTCTTTTTCCTTCTAAGCCCACA
*
2517019 ACTCCGTGGCACTCTTTTTCCTTCTAAGCCCACAACTCCGTGGCACTCTTTT
66 ACTCCGTGGCACTCTTTTTCCTTCTAAGCCCACAACTCCGTGGCACCCTTTT
2517071 TTCCCTTTTA
Statistics
Matches: 108, Mismatches: 5, Indels: 9
0.89 0.04 0.07
Matches are distributed among these distances:
128 26 0.24
129 1 0.01
130 4 0.04
131 48 0.44
132 14 0.13
134 6 0.06
135 9 0.08
ACGTcount: A:0.19, C:0.35, G:0.13, T:0.33
Consensus pattern (131 bp):
GTGGCACTCTTTTTCCTTTTCAAAGCCCACAACTACGTGGCACTCTTTTTCCTTCTAAGCCCACA
ACTCCGTGGCACTCTTTTTCCTTCTAAGCCCACAACTCCGTGGCACCCTTTTAAGTCCACGACTA
C
Found at i:2516993 original size:97 final size:95
Alignment explanation
Indices: 2516849--2517133 Score: 279
Period size: 97 Copynumber: 2.9 Consensus size: 95
2516839 TTTTCAAAGC
* * * * *
2516849 CCACAACTCCGTGGCACCTTTTTCTTTTTACAGCCCACAACTCCGTGGCACTCTTTTTCCCTTGT
1 CCACAACTACGTGGCACCTTTTTCTCTTTAAAGCCCACAACTACGTGGCACTCTTTTT-CCTT-C
2516914 TAAAGCCCACAACTCCGTGGCACCCTTTTAAGT
64 T-AAGCCCACAACTCCGTGGCACCCTTTTAAGT
*
2516947 CCACGACTACGTGGCA-CTCTTTTC-CTTTAAAGCCCACAACTACGTGGCACTCTTTTTCCTTCT
1 CCACAACTACGTGGCACCT-TTTTCTCTTTAAAGCCCACAACTACGTGGCACTCTTTTTCCTTCT
* *
2517010 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGC
65 AAGCCCACAACTCCGTGGCA--C-----CCTTTTAAGT
* * * * *
2517048 CCACAACTCCGTGGCACTCTTTTTTCCCTTTTAAAGCCCACAACTCCGTGGCAC-CTTGTTCTTT
1 CCACAACTACGTGGCAC-C-TTTTTCTC-TTTAAAGCCCACAACTACGTGGCACTCTTTTTCCTT
* * *
2517112 TTAAGTCCACAACTTCGTGGCA
63 CTAAGCCCACAACTCCGTGGCA
2517134 TCTTTCACCC
Statistics
Matches: 158, Mismatches: 16, Indels: 20
0.81 0.08 0.10
Matches are distributed among these distances:
94 20 0.13
95 1 0.01
96 5 0.03
97 32 0.20
98 19 0.12
101 22 0.14
103 6 0.04
104 29 0.18
105 24 0.15
ACGTcount: A:0.20, C:0.35, G:0.13, T:0.32
Consensus pattern (95 bp):
CCACAACTACGTGGCACCTTTTTCTCTTTAAAGCCCACAACTACGTGGCACTCTTTTTCCTTCTA
AGCCCACAACTCCGTGGCACCCTTTTAAGT
Found at i:2517253 original size:33 final size:33
Alignment explanation
Indices: 2517149--2517275 Score: 199
Period size: 32 Copynumber: 3.9 Consensus size: 33
2517139 CACCCTTTCT
2517149 AAAGCCCACACAAGTCGGTGGCAACCCTTCTT-
1 AAAGCCCACACAAGTCGGTGGCAACCCTTCTTC
* *
2517181 AAAGCCCACACAAGTTGGTGGCAACCC--CCTC
1 AAAGCCCACACAAGTCGGTGGCAACCCTTCTTC
2517212 AAAGCCCACACAAGTCGGTGGCAA-CCTTCTTCC
1 AAAGCCCACACAAGTCGGTGGCAACCCTTCTT-C
2517245 AAAGCCCACACAAGTCGGTGGCAACCCTTCT
1 AAAGCCCACACAAGTCGGTGGCAACCCTTCT
2517276 AAGCCCAATA
Statistics
Matches: 86, Mismatches: 4, Indels: 8
0.88 0.04 0.08
Matches are distributed among these distances:
30 4 0.05
31 23 0.27
32 28 0.33
33 25 0.29
34 6 0.07
ACGTcount: A:0.28, C:0.36, G:0.19, T:0.17
Consensus pattern (33 bp):
AAAGCCCACACAAGTCGGTGGCAACCCTTCTTC
Found at i:2517280 original size:63 final size:62
Alignment explanation
Indices: 2517140--2517282 Score: 207
Period size: 63 Copynumber: 2.2 Consensus size: 62
2517130 GGCATCTTTC
*
2517140 ACCCTTTCTAAAGCCCACACAAGTCGGTGGCAACCCTTCTTAAAGCCCACACAAGTTGGTGGCA
1 ACCC-TTCT-AAGCCCACACAAGTCGGTGGCAACCCTTCTTAAAGCCCACACAAGTCGGTGGCA
* *
2517204 ACCCCCTCAAAGCCCACACAAGTCGGTGGCAA-CCTTCTTCCAAAGCCCACACAAGTCGGTGGCA
1 A-CCCTTCTAAGCCCACACAAGTCGGTGGCAACCCTTCTT--AAAGCCCACACAAGTCGGTGGCA
2517268 ACCCTTCTAAGCCCA
1 ACCCTTCTAAGCCCA
2517283 ATATAGCTGG
Statistics
Matches: 71, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
62 7 0.10
63 35 0.49
64 26 0.37
65 3 0.04
ACGTcount: A:0.28, C:0.37, G:0.17, T:0.17
Consensus pattern (62 bp):
ACCCTTCTAAGCCCACACAAGTCGGTGGCAACCCTTCTTAAAGCCCACACAAGTCGGTGGCA
Found at i:2517394 original size:49 final size:47
Alignment explanation
Indices: 2517275--2517971 Score: 795
Period size: 49 Copynumber: 14.8 Consensus size: 47
2517265 GCAACCCTTC
* * *
2517275 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--TT--ATCTT
* *
2517327 TAAGTCCAATGTAGCTGGCCTTGACTTAGCACATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C-TTATCTT
2517376 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC----CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACTTATCTT
* * *
2517419 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-CTT-ATCTT
2517468 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC----CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACTTATCTT
* * *
2517511 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-CTT-ATCTT
2517560 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC----CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACTTATCTT
* * * *
2517603 TAAGTCCAATATCGCTGGCCTTGAATCAGTATATTGGCATCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-CTT-ATCTT
*
2517652 TAAATCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC----CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACTTATCTT
* * * *
2517695 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATTATCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACT-T-ATCTT
*
2517744 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-CTT-ATCTT
* *
2517793 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCACCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-CTTATCTT
2517841 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC----CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACTTATCTT
* * *
2517884 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATCGGCACCTTTTCCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--TT--ATCTT
* *
2517936 TAAGTTCAATGTAGCCGGCCTTGAATCAGCACATTG
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTG
2517972 ACATCCTTTT
Statistics
Matches: 562, Mismatches: 49, Indels: 68
0.83 0.07 0.10
Matches are distributed among these distances:
43 193 0.34
44 4 0.01
47 1 0.00
48 47 0.08
49 243 0.43
50 1 0.00
51 3 0.01
52 70 0.12
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.31
Consensus pattern (47 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACTTATCTT
Found at i:2517436 original size:43 final size:43
Alignment explanation
Indices: 2517373--2517927 Score: 633
Period size: 43 Copynumber: 12.1 Consensus size: 43
2517363 GCACCTTTAT
2517373 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
* * *
2517416 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C
2517463 ATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
1 --CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
* * *
2517508 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C
2517555 ATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
1 --CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
* * * *
2517600 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGTATATTGGCATCTTC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C
*
2517647 ATCTTTAAATCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
1 --CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
* * *
2517692 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATTATC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGC---A-C
*
2517739 ATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTC
1 --CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C
2517788 ATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCAC
1 --CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG-----CAC
2517838 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
* * *
2517881 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATCGGCAC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
2517924 CTTT
1 CTTT
2517928 TCCATCTTTA
Statistics
Matches: 447, Mismatches: 33, Indels: 64
0.82 0.06 0.12
Matches are distributed among these distances:
43 200 0.45
45 3 0.01
46 2 0.00
47 4 0.01
48 40 0.09
49 195 0.44
50 1 0.00
54 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.31
Consensus pattern (43 bp):
CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
Found at i:2517481 original size:92 final size:92
Alignment explanation
Indices: 2517324--2517980 Score: 1012
Period size: 92 Copynumber: 7.0 Consensus size: 92
2517314 CCTTTTCCAT
* * * * * * *
2517324 CTTTAAGTCCAATGTAGCTGGCCTTGACTTAGCACATTGGCACCTTTATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
2517389 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
2517416 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
2517481 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
2517508 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
2517573 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* *
2517600 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGTATATTGGCATCTTCATCTTTAAATCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
2517665 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
2517692 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCAT-TATCATCTTTAAGTCCAATGT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCT-TCATCTTTAAGTCCAATGT
*
2517756 AGCTGGCCTTGACTCAGCACATTGGCACCTTC
65 AGCTGGCCTTGAATCAGCACATTGGCA----C
* * * * *
2517788 ATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-CCTCACCTTTAAGTCCAATG
1 --CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATG
2517852 TAGCTGGCCTTGAATCAGCACATTGGCAC
64 TAGCTGGCCTTGAATCAGCACATTGGCAC
* * * *
2517881 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATCGGCACCTTTTCCATCTTTAAGTTCAAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA--TCTT-CATCTTTAAGTCCAAT
* *
2517946 GTAGCCGGCCTTGAATCAGCACATTGACATC
63 GTAGCTGGCCTTGAATCAGCACATTGGCA-C
2517977 CTTT
1 CTTT
2517981 TTCATCATCT
Statistics
Matches: 525, Mismatches: 27, Indels: 22
0.91 0.05 0.04
Matches are distributed among these distances:
91 40 0.08
92 353 0.67
93 1 0.00
94 1 0.00
95 41 0.08
96 6 0.01
97 44 0.08
98 39 0.07
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (92 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
GCTGGCCTTGAATCAGCACATTGGCAC
Found at i:2518824 original size:33 final size:33
Alignment explanation
Indices: 2518787--2518853 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
2518777 TTCAACGATC
2518787 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
2518820 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
2518853 T
1 T
2518854 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:2518825 original size:13 final size:13
Alignment explanation
Indices: 2518807--2518831 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2518797 CATAAAATGT
2518807 TGTATCGATACAA
1 TGTATCGATACAA
2518820 TGTATCGATACA
1 TGTATCGATACA
2518832 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2518912 original size:13 final size:13
Alignment explanation
Indices: 2518894--2518918 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2518884 ATTACTCAAA
2518894 TGTATCGATACAT
1 TGTATCGATACAT
2518907 TGTATCGATACA
1 TGTATCGATACA
2518919 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2519020 original size:52 final size:52
Alignment explanation
Indices: 2518927--2519054 Score: 215
Period size: 52 Copynumber: 2.5 Consensus size: 52
2518917 CACTGATCTT
*
2518927 TGTATCGATACATGCAGGC-AATTTGCCCAGATGTATCGATACA-TTTTAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATT-AAA
2518978 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
*
2519030 TGTATCGATACATGCAGCCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
2519055 TCATATTTCG
Statistics
Matches: 73, Mismatches: 2, Indels: 3
0.94 0.03 0.04
Matches are distributed among these distances:
51 19 0.26
52 51 0.70
53 3 0.04
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
Found at i:2520388 original size:20 final size:20
Alignment explanation
Indices: 2520365--2520437 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
2520355 ACAATTCAAA
2520365 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
2520385 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
2520406 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
2520426 GTATCGATACAT
1 GTATCGATACAT
2520438 AAAAAAGTTG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:2520409 original size:21 final size:21
Alignment explanation
Indices: 2520383--2520458 Score: 91
Period size: 21 Copynumber: 3.7 Consensus size: 21
2520373 ACATGTTGCA
2520383 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
2520404 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
*
2520424 ATGTATCGATACATAAAAAAG
1 ATGTATCGATACATGAAAAAG
*
2520445 TTGTATCGATACAT
1 ATGTATCGATACAT
2520459 TTCTTGGCAG
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
20 15 0.34
21 29 0.66
ACGTcount: A:0.41, C:0.12, G:0.17, T:0.30
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:2520416 original size:41 final size:41
Alignment explanation
Indices: 2520365--2520458 Score: 170
Period size: 41 Copynumber: 2.3 Consensus size: 41
2520355 ACAATTCAAA
*
2520365 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
*
2520406 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGTT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
2520447 GTATCGATACAT
1 GTATCGATACAT
2520459 TTCTTGGCAG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.31
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:2520515 original size:13 final size:13
Alignment explanation
Indices: 2520497--2520522 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2520487 TACAGCAAGT
2520497 ATGTATCGATACA
1 ATGTATCGATACA
2520510 ATGTATCGATACA
1 ATGTATCGATACA
2520523 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2521043 original size:34 final size:35
Alignment explanation
Indices: 2520980--2521046 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
2520970 CTAAGTGATT
2520980 GAGAGGTTCTATCTTAGCCTTTGAAAAAGATAGAGA
1 GAGAGGTTCTATCTTAGCCTTTG-AAAAGATAGAGA
2521016 GAGAGGTTTCTATCTTAGCC-TTG-AAAGATAG
1 GAGAGG-TTCTATCTTAGCCTTTGAAAAGATAG
2521047 TGTTGTAAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 8 0.27
36 9 0.30
37 13 0.43
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (35 bp):
GAGAGGTTCTATCTTAGCCTTTGAAAAGATAGAGA
Found at i:2523514 original size:1 final size:1
Alignment explanation
Indices: 2523510--2523534 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
2523500 TCATTTTTAT
2523510 AAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAA
2523535 TCATAATTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:2524221 original size:13 final size:13
Alignment explanation
Indices: 2524203--2524227 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2524193 TTTTCCAGAT
2524203 TGTATCGATACAA
1 TGTATCGATACAA
2524216 TGTATCGATACA
1 TGTATCGATACA
2524228 TTACTTAAGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2526001 original size:20 final size:20
Alignment explanation
Indices: 2525978--2526050 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
2525968 ACAATTCAAA
2525978 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
2525998 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
2526019 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
2526039 GTATCGATACAT
1 GTATCGATACAT
2526051 AAAAAAGTTG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:2526022 original size:21 final size:21
Alignment explanation
Indices: 2525996--2526071 Score: 91
Period size: 21 Copynumber: 3.7 Consensus size: 21
2525986 ACATGTTGCA
2525996 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
2526017 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
*
2526037 ATGTATCGATACATAAAAAAG
1 ATGTATCGATACATGAAAAAG
*
2526058 TTGTATCGATACAT
1 ATGTATCGATACAT
2526072 TTCTTGGCAG
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
20 15 0.34
21 29 0.66
ACGTcount: A:0.41, C:0.12, G:0.17, T:0.30
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:2526029 original size:41 final size:41
Alignment explanation
Indices: 2525978--2526071 Score: 170
Period size: 41 Copynumber: 2.3 Consensus size: 41
2525968 ACAATTCAAA
*
2525978 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
*
2526019 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGTT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
2526060 GTATCGATACAT
1 GTATCGATACAT
2526072 TTCTTGGCAG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.31
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:2526128 original size:13 final size:13
Alignment explanation
Indices: 2526110--2526135 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2526100 TACAGCAAGT
2526110 ATGTATCGATACA
1 ATGTATCGATACA
2526123 ATGTATCGATACA
1 ATGTATCGATACA
2526136 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2532540 original size:78 final size:79
Alignment explanation
Indices: 2532404--2532606 Score: 219
Period size: 78 Copynumber: 2.6 Consensus size: 79
2532394 GAGATAATAA
* * * * * ** * *
2532404 CGGGGTTGGAGTGTTCCCTTGAAAATAACGGGGCTAGAGTATCCCCGGTTGTGAGAAATCGAT-G
1 CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATAG
*
2532468 CTTAGAAAAAAAAT
66 CTTAGAAAAAAAAC
* * *
2532482 CGGGATTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGGGAAATCAATAT
1 CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATAG
* * * * *
2532547 TTTGGGAATAAAGC
66 CTTAGAAAAAAAAC
* *
2532561 CGGGGTTGGAGTATCCCCTCGGAAGTAACGGGGTTGGAGTATCCCC
1 CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCC
2532607 GATGAAATAA
Statistics
Matches: 103, Mismatches: 21, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
78 52 0.50
79 51 0.50
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (79 bp):
CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATAG
CTTAGAAAAAAAAC
Found at i:2532601 original size:28 final size:28
Alignment explanation
Indices: 2532561--2532632 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
2532551 GGAATAAAGC
** *
2532561 CGGGGTTGGAGTATCCCCTCGGAAGTAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
2532589 CGGGGTTGGAGTATCCCCGATGAAATAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
2532617 CGAGGTTGGAGTATCC
1 CGGGGTTGGAGTATCC
2532633 TCGACTGTGA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.24, C:0.19, G:0.35, T:0.22
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGAGGAAATAA
Found at i:2532624 original size:107 final size:110
Alignment explanation
Indices: 2532482--2532716 Score: 275
Period size: 107 Copynumber: 2.2 Consensus size: 110
2532472 GAAAAAAAAT
* * * **
2532482 CGGGATTGGAGTATCCCC--TCGAAAATAACGGGGTTGGAGTATCCCCAATTATGGGAAATCAAT
1 CGGGGTTGGAGTATCCCCGATCGAAAATAACGAGGTTGGAGTATCCCCAACTATGAAAAATCAAT
* * * * *
2532545 A-TTTTGGGAATAAAGCCGGGGTTGGAGTATCCCCTCGGAAGTAA
66 ATTTTTGGAAATAAAACCAGAGTTGGAGTATCCCCTCGGAAATAA
* * * ***
2532589 CGGGGTTGGAGTATCCCCGAT-G-AAATAACGAGGTTGGAGTATCCTCGACTGTGAAAAATTGGT
1 CGGGGTTGGAGTATCCCCGATCGAAAATAACGAGGTTGGAGTATCCCCAACTATGAAAAATCAAT
*
2532652 ATTTTTGGAAATAAAATCAGAGTTGGAGTATCCCCTCGGAAATAA
66 ATTTTTGGAAATAAAACCAGAGTTGGAGTATCCCCTCGGAAATAA
2532697 -GGGGTTGGAGTATCCCCGAT
1 CGGGGTTGGAGTATCCCCGAT
2532717 TGTGAAGAAA
Statistics
Matches: 108, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
107 69 0.64
108 38 0.35
109 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.26
Consensus pattern (110 bp):
CGGGGTTGGAGTATCCCCGATCGAAAATAACGAGGTTGGAGTATCCCCAACTATGAAAAATCAAT
ATTTTTGGAAATAAAACCAGAGTTGGAGTATCCCCTCGGAAATAA
Found at i:2532728 original size:80 final size:81
Alignment explanation
Indices: 2532593--2532769 Score: 259
Period size: 81 Copynumber: 2.2 Consensus size: 81
2532583 AAGTAACGGG
* *
2532593 GTTGGAGTATCCCCGATGAAATAACGAGGTTGGAGTATCCTCGACTGTGAAAAATTGGT-ATTTT
1 GTTGGAGTATCCCCGAGGAAATAACGAGGTTGGAGTATCCCCGACTGTGAAAAATTGGTGATTTT
2532657 TGGAAATAAAATCAGA
66 TGGAAATAAAATCAGA
** * * *
2532673 GTTGGAGTATCCCCTCGGAAATAA-GGGGTTGGAGTATCCCCGATTGTGAAGAAATTGGTGTTTT
1 GTTGGAGTATCCCCGAGGAAATAACGAGGTTGGAGTATCCCCGACTGTGAA-AAATTGGTGATTT
*
2532737 TTGGAAATAAAATCGGA
65 TTGGAAATAAAATCAGA
2532754 GTTGGAGTATCCCCGA
1 GTTGGAGTATCCCCGA
2532770 TTATAGAAAA
Statistics
Matches: 85, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
79 23 0.27
80 29 0.34
81 33 0.39
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.29
Consensus pattern (81 bp):
GTTGGAGTATCCCCGAGGAAATAACGAGGTTGGAGTATCCCCGACTGTGAAAAATTGGTGATTTT
TGGAAATAAAATCAGA
Found at i:2532862 original size:52 final size:50
Alignment explanation
Indices: 2532700--2532870 Score: 184
Period size: 52 Copynumber: 3.3 Consensus size: 50
2532690 GAAATAAGGG
* * *
2532700 GTTGGAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAA-AAATTAGTG-TTTTAGG--ATAAAACCGGA
* * **
2532754 GTTGGAGTATCCCCGATTAT-AGAAAATTAGTGTCTTCAAAATAAAACCAGGA
1 GTTGGAGTATCCCCGATTGTGA-AAAATTAGTGT-TTTAGGATAAAACC-GGA
2532806 -TTGGAGTATCCCCGATTGTGGAAAAATTAGTGTTTTAGCGATAAAACCGGA
1 GTTGGAGTATCCCCGATTGT-GAAAAATTAGTGTTTTAG-GATAAAACCGGA
2532857 GTTGGAGTATCCCC
1 GTTGGAGTATCCCC
2532871 TCGGAAATAA
Statistics
Matches: 99, Mismatches: 11, Indels: 16
0.79 0.09 0.13
Matches are distributed among these distances:
51 31 0.31
52 36 0.36
53 12 0.12
54 20 0.20
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.30
Consensus pattern (50 bp):
GTTGGAGTATCCCCGATTGTGAAAAATTAGTGTTTTAGGATAAAACCGGA
Found at i:2532897 original size:28 final size:27
Alignment explanation
Indices: 2532857--2532927 Score: 88
Period size: 27 Copynumber: 2.6 Consensus size: 27
2532847 TAAAACCGGA
** *
2532857 GTTGGAGTATCCCCTCGGAAATAACGGG
1 GTTGGAGTATCCCCGAGG-AATAACGAG
* *
2532885 GTTGGAGTATCCCCGATGATTAACGAG
1 GTTGGAGTATCCCCGAGGAATAACGAG
2532912 GTTGGAGTATCCCCGA
1 GTTGGAGTATCCCCGA
2532928 TTGTGAAGAA
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
27 23 0.61
28 15 0.39
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.24
Consensus pattern (27 bp):
GTTGGAGTATCCCCGAGGAATAACGAG
Found at i:2533010 original size:51 final size:53
Alignment explanation
Indices: 2532704--2533034 Score: 150
Period size: 51 Copynumber: 6.3 Consensus size: 53
2532694 TAAGGGGTTG
* * * *
2532704 GAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTTGGAAATAAAATCGGAGTTG
1 GAGTATCCCCGATTATGAAGAAATTAGTG-TTTTTGAAAATAAAATCGGAGTTA
* * * *
2532758 GAGTATCCCCGATTAT--AGAAAATTAGTG-TCTTCAAAATAAAACCAGGA-TTG
1 GAGTATCCCCGATTATGAAG-AAATTAGTGTTTTTGAAAATAAAATC-GGAGTTA
* * ** * *
2532809 GAGTATCCCCGATTGTGGAA-AAATTAGTGTTTTAG-CGATAAAACCGGAGTTG
1 GAGTATCCCCGATTAT-GAAGAAATTAGTGTTTTTGAAAATAAAATCGGAGTTA
* *** * **** ** * *
2532861 GAGTATCCCCTCGGA-AAT-AACGGGGTTGGAGTATCCCCGATGAT-TAA-C-GAGGTTG
1 GAGTAT-CCC-C-GATTATGAA-GAAATT--AGTGTTTTTGAAAATAAAATCGGA-GTTA
* * *
2532916 GAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTTGGAAATAAAATCGGAGTTA
1 GAGTATCCCCGATTATGAAGAAATTAGTG-TTTTTGAAAATAAAATCGGAGTTA
*
2532970 GAGTATCCCCGATTAT--AGAAAATTAGTG-TTTTGAAAATAAAATCGGAGTTG
1 GAGTATCCCCGATTATGAAG-AAATTAGTGTTTTTGAAAATAAAATCGGAGTTA
* *
2533021 GAATATCCACGATT
1 GAGTATCCCCGATT
2533035 GTGGAGAATT
Statistics
Matches: 208, Mismatches: 46, Indels: 49
0.69 0.15 0.16
Matches are distributed among these distances:
51 68 0.33
52 41 0.20
53 28 0.13
54 46 0.22
55 15 0.07
56 7 0.03
57 3 0.01
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.30
Consensus pattern (53 bp):
GAGTATCCCCGATTATGAAGAAATTAGTGTTTTTGAAAATAAAATCGGAGTTA
Found at i:2535423 original size:13 final size:13
Alignment explanation
Indices: 2535405--2535430 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2535395 ACAAAAATCC
2535405 ATGTATCGATACA
1 ATGTATCGATACA
2535418 ATGTATCGATACA
1 ATGTATCGATACA
2535431 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2535442 original size:33 final size:32
Alignment explanation
Indices: 2535384--2535450 Score: 91
Period size: 33 Copynumber: 2.0 Consensus size: 32
2535374 AAAATTTCCA
*
2535384 AATGTATCGATACAAAAATCCATGTATCGATAC
1 AATGTATCGATACAAAAA-CAATGTATCGATAC
2535417 AATGTATCGATACACAGAAA-AATGTATCGATAC
1 AATGTATCGATACA-A-AAACAATGTATCGATAC
2535450 A
1 A
2535451 TTTCCTTGGC
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
33 27 0.87
34 1 0.03
35 3 0.10
ACGTcount: A:0.45, C:0.16, G:0.13, T:0.25
Consensus pattern (32 bp):
AATGTATCGATACAAAAACAATGTATCGATAC
Found at i:2535494 original size:19 final size:18
Alignment explanation
Indices: 2535470--2535537 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
2535460 CAGTAGCTAA
2535470 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
2535489 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
2535504 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
2535521 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
2535538 TCGTTGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 4 0.09
19 25 0.58
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:2535510 original size:13 final size:13
Alignment explanation
Indices: 2535492--2535516 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2535482 ACAATACTTA
2535492 TGTATCGATACAT
1 TGTATCGATACAT
2535505 TGTATCGATACA
1 TGTATCGATACA
2535517 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2535514 original size:32 final size:32
Alignment explanation
Indices: 2535473--2535535 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
2535463 TAGCTAATTA
*
2535473 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
2535505 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
2535536 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:2539458 original size:62 final size:62
Alignment explanation
Indices: 2539383--2539511 Score: 213
Period size: 62 Copynumber: 2.1 Consensus size: 62
2539373 CTCCGTATAG
* * *
2539383 GCATAGCAATAACTTTCAGGATGTAAATTAACTATGTCTCTCGTGAGTAACCCTTCGCATTT
1 GCATAGCAATAACTTTCAGGATGTAAATTAACTATGTCTCTCATGAGTAACCCTCCACATTT
* *
2539445 GCATATCAATAACTTTCCGGATGTAAATTAACTATGTCTCTCATGAGTAACCCTCCACATTT
1 GCATAGCAATAACTTTCAGGATGTAAATTAACTATGTCTCTCATGAGTAACCCTCCACATTT
2539507 GCATA
1 GCATA
2539512 AGGAAATACA
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
62 62 1.00
ACGTcount: A:0.30, C:0.22, G:0.14, T:0.33
Consensus pattern (62 bp):
GCATAGCAATAACTTTCAGGATGTAAATTAACTATGTCTCTCATGAGTAACCCTCCACATTT
Done.