genome.fa.s410.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold410
Parameters: 2 7 7 80 10 50 1000
Length:  242728

Tables:   1   2   

This is table  1  of  2  ( 121 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6567--6609	22	1.9	23	85	4	61	44	9	13	32	1.76
6814--6853	2	19.5	2	94	5	71	47	0	2	50	1.14
7536--7597	32	1.9	33	90	3	99	37	16	9	37	1.81
10450--10477	14	2.0	14	100	0	56	28	7	14	50	1.69
14992--15043	24	2.2	24	100	0	104	48	7	0	44	1.31
17200--17258	2	30.5	2	93	6	104	0	50	0	49	1.00
18481--18510	12	2.5	12	88	0	51	30	0	0	70	0.88
21275--21697	151	2.8	150	86	2	560	30	14	13	41	1.84
30291--30366	16	4.8	16	77	6	73	14	17	26	42	1.87
30284--30366	32	2.6	32	79	7	105	15	16	25	42	1.88
30284--30368	16	5.3	16	75	10	66	16	17	24	41	1.90
30972--31004	17	1.9	17	93	0	57	66	0	0	33	0.92
31425--31472	16	3.0	16	80	20	64	27	16	18	37	1.92
31427--31481	16	3.4	16	78	14	60	27	14	16	41	1.87
39008--39062	20	2.6	21	88	5	76	29	18	12	40	1.87
47537--47576	2	20.0	2	100	0	80	0	50	0	50	1.00
50351--50378	2	14.0	2	100	0	56	50	0	0	50	1.00
50441--50517	2	38.5	2	92	0	127	50	3	0	45	1.20
50441--50518	18	4.3	18	96	0	147	50	5	0	44	1.24
53621--53645	12	2.1	12	100	0	50	84	0	16	0	0.63
54175--54420	124	2.0	122	88	3	359	37	17	15	29	1.90
54737--54763	1	27.0	1	100	0	54	100	0	0	0	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59591--59615	2	12.5	2	100	0	50	48	0	0	52	1.00
59531--59699	84	2.0	84	98	0	329	35	4	7	52	1.51
59675--59699	2	12.5	2	100	0	50	48	0	0	52	1.00
64141--64182	3	14.0	3	89	0	66	28	0	4	66	1.12
67644--67670	12	2.2	12	100	0	54	0	40	0	59	0.98
70527--70717	96	2.0	95	97	1	364	27	16	19	37	1.93
77975--78006	2	16.0	2	100	0	64	50	0	50	0	1.00
81155--81186	3	10.7	3	100	0	64	68	0	31	0	0.90
82707--82801	50	1.9	50	93	0	163	49	10	7	32	1.65
83371--83398	2	14.0	2	100	0	56	0	50	0	50	1.00
84069--84103	2	17.5	2	100	0	70	0	48	0	51	1.00
96514--96538	5	5.0	5	100	0	50	40	0	60	0	0.97
97193--97236	22	2.0	23	86	4	63	47	0	2	50	1.13
98119--98154	19	1.9	19	88	5	56	58	0	2	38	1.13
98584--98626	21	2.0	21	90	0	68	18	27	13	39	1.89
101035--101082	3	16.0	3	95	0	87	66	2	0	31	1.03
117545--117629	22	3.8	22	73	11	82	25	2	30	41	1.68
117551--117624	24	3.2	24	72	11	73	24	2	32	40	1.69
117906--117958	27	2.0	27	88	0	79	35	22	7	33	1.83
118009--118033	2	12.5	2	100	0	50	52	0	0	48	1.00
120913--120990	19	4.4	17	76	16	68	47	0	0	52	1.00
120943--120989	20	2.4	20	86	10	62	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
122037--122104	27	2.5	25	75	13	64	52	0	0	47	1.00
122036--122081	22	2.2	20	85	14	58	54	0	0	45	0.99
122108--122161	14	3.9	14	83	11	67	22	1	0	75	0.89
122134--122172	20	1.9	21	84	5	53	23	0	0	76	0.78
122678--122703	2	13.0	2	100	0	52	50	0	0	50	1.00
123978--124041	24	2.7	24	74	13	69	53	0	0	46	1.00
123979--124040	25	2.5	24	81	5	70	54	0	0	45	0.99
123978--124041	23	2.7	25	76	13	73	53	0	0	46	1.00
127799--127835	2	18.5	2	100	0	74	51	0	0	48	1.00
130062--130174	40	2.8	42	76	9	117	42	0	3	53	1.18
133011--133066	22	2.5	23	94	2	96	62	7	10	19	1.50
133977--134051	20	3.8	20	78	3	71	40	13	13	33	1.83
133974--134051	40	2.0	39	84	2	102	39	14	12	33	1.84
134528--135712	28	41.9	29	86	5	1056	24	16	32	27	1.96
134528--135740	57	21.5	57	87	4	1058	24	16	32	26	1.96
143230--143278	22	2.2	22	96	0	89	67	6	8	18	1.37
144197--144271	20	3.8	20	78	3	71	40	13	13	33	1.83
144194--144271	40	2.0	39	84	2	102	39	14	12	33	1.84
146149--146190	22	1.9	22	85	0	57	40	14	16	28	1.88
146241--146283	17	2.6	17	81	3	52	25	11	2	60	1.43
146425--146453	11	2.7	11	94	5	51	31	0	0	68	0.89
146428--146505	40	2.0	40	94	0	138	44	3	1	50	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
146631--146665	2	17.5	2	100	0	70	48	0	0	51	1.00
147200--147229	12	2.5	12	94	0	51	33	6	16	43	1.74
147343--148148	401	2.0	401	99	0	1585	37	12	19	31	1.88
149356--149448	46	2.0	46	93	0	159	27	31	10	30	1.91
151460--151488	11	2.5	12	88	11	51	34	6	17	41	1.76
151648--151779	64	2.1	64	91	2	212	45	19	8	26	1.79
152884--152939	28	1.9	30	92	7	98	37	19	21	21	1.94
152853--153021	79	2.2	79	80	3	189	32	15	25	26	1.95
152976--153049	28	2.6	29	87	4	98	24	16	32	27	1.96
153032--153258	52	4.3	52	77	6	197	33	11	24	30	1.91
153032--153419	53	7.4	51	71	12	214	31	12	25	30	1.93
153241--153316	27	2.8	28	89	2	109	21	21	34	23	1.97
153300--153420	49	2.4	52	86	6	167	30	12	24	32	1.92
155791--155816	13	2.0	13	100	0	52	38	15	15	30	1.88
155770--155836	33	2.0	33	88	0	98	43	16	14	25	1.86
155856--155923	19	3.9	18	76	23	83	38	14	11	35	1.83
155878--155902	13	1.9	13	100	0	50	32	16	16	36	1.90
155859--155921	32	2.0	32	96	0	117	36	15	12	34	1.86
160642--160671	12	2.5	12	100	0	60	36	6	16	40	1.75
160831--160962	64	2.1	64	92	0	219	44	21	8	25	1.80
161435--161464	15	2.0	15	100	0	60	46	33	0	20	1.51
173837--173866	3	10.0	3	92	0	51	70	0	0	30	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
177733--177762	2	15.0	2	100	0	60	0	0	50	50	1.00
179206--179270	16	4.1	16	72	20	55	46	0	1	52	1.10
189019--189062	24	1.9	22	81	9	52	68	4	6	20	1.31
191883--191920	18	2.2	18	85	4	51	28	0	2	68	1.03
191937--191976	14	2.9	14	82	10	55	62	5	0	32	1.17
192643--192680	12	3.2	12	88	7	60	65	0	0	34	0.93
193984--194677	370	1.9	365	97	1	1129	35	13	15	34	1.88
199528--199613	42	2.0	42	84	0	109	39	15	16	29	1.89
200297--200321	2	12.5	2	100	0	50	52	0	0	48	1.00
200705--200751	3	15.7	3	95	0	85	70	0	0	29	0.88
201147--201185	20	2.0	20	84	0	51	51	2	0	46	1.14
201465--201511	15	3.4	14	77	11	53	44	0	0	55	0.99
205952--206023	32	2.5	28	73	18	67	40	0	0	59	0.97
205958--206018	32	1.9	32	83	6	79	42	0	0	57	0.98
210719--210756	18	2.1	18	85	9	51	71	0	0	28	0.87
210740--210816	32	2.4	31	85	8	93	58	0	2	38	1.12
210774--210821	25	1.9	25	83	8	62	56	0	2	41	1.11
212369--212475	42	2.5	42	84	3	135	18	20	20	40	1.92
216070--216111	18	2.2	20	87	8	61	47	2	0	50	1.14
220503--220564	2	31.0	2	96	0	115	48	0	50	1	1.10
222700--222732	3	11.0	3	93	0	57	63	3	33	0	1.10
229596--229653	12	5.1	12	80	17	70	67	0	1	31	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
229596--229674	19	4.1	19	73	10	70	63	0	1	35	1.03
229611--229672	27	2.4	25	84	10	72	61	0	1	37	1.06
230180--230233	19	2.9	19	70	22	51	55	0	0	44	0.99
230958--230986	14	2.0	15	93	6	51	65	0	0	34	0.93
230959--231007	19	2.5	19	80	9	55	65	0	0	34	0.93
232404--232432	3	9.7	3	100	0	58	34	0	0	65	0.93
234436--234469	15	2.4	14	90	5	50	41	0	0	58	0.98
234437--234489	23	2.4	22	70	14	54	43	0	0	56	0.99
234663--234705	23	1.9	22	86	13	61	39	0	0	60	0.97
235394--235488	29	3.2	29	88	4	120	41	7	3	48	1.47

Tables:   1   2