Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold411
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 403047
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.33
File 1 of 3
Found at i:438 original size:15 final size:16
Alignment explanation
Indices: 403--438 Score: 58
Period size: 15 Copynumber: 2.4 Consensus size: 16
393 ATAAAAATTG
403 TCCAAAATGAGGAAGC
1 TCCAAAATGAGGAAGC
419 T-CAAAATGA-GAAGC
1 TCCAAAATGAGGAAGC
433 TCCAAA
1 TCCAAA
439 CGAAATGATG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
14 6 0.32
15 12 0.63
16 1 0.05
ACGTcount: A:0.47, C:0.19, G:0.19, T:0.14
Consensus pattern (16 bp):
TCCAAAATGAGGAAGC
Found at i:2686 original size:20 final size:20
Alignment explanation
Indices: 2643--2688 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
2633 AAATCTTTTG
2643 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
2664 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
2684 CAAAA
1 CAAAA
2689 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:5075 original size:19 final size:19
Alignment explanation
Indices: 5053--5116 Score: 86
Period size: 19 Copynumber: 3.7 Consensus size: 19
5043 GTAGCCAAAC
5053 ATGTATCGATACACCAAGT
1 ATGTATCGATACACCAAGT
5072 ATGTATCGAT--A-C-A--
1 ATGTATCGATACACCAAGT
5085 ATGTATCGATACACCAAGT
1 ATGTATCGATACACCAAGT
5104 ATGTATCGATACA
1 ATGTATCGATACA
5117 ATGTATCGAT
Statistics
Matches: 39, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 10 0.26
15 2 0.05
16 2 0.05
17 2 0.05
19 23 0.59
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.28
Consensus pattern (19 bp):
ATGTATCGATACACCAAGT
Found at i:5090 original size:13 final size:13
Alignment explanation
Indices: 5072--5129 Score: 62
Period size: 13 Copynumber: 4.0 Consensus size: 13
5062 TACACCAAGT
5072 ATGTATCGATACA
1 ATGTATCGATACA
5085 ATGTATCGATACACCAA
1 ATGTATCGAT--A-C-A
5102 GTATGTATCGATACA
1 --ATGTATCGATACA
5117 ATGTATCGATACA
1 ATGTATCGATACA
5130 CAAAAAAATT
Statistics
Matches: 39, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 23 0.59
15 2 0.05
16 2 0.05
17 2 0.05
19 10 0.26
ACGTcount: A:0.38, C:0.17, G:0.16, T:0.29
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:5094 original size:32 final size:32
Alignment explanation
Indices: 5053--5130 Score: 156
Period size: 32 Copynumber: 2.4 Consensus size: 32
5043 GTAGCCAAAC
5053 ATGTATCGATACACCAAGTATGTATCGATACA
1 ATGTATCGATACACCAAGTATGTATCGATACA
5085 ATGTATCGATACACCAAGTATGTATCGATACA
1 ATGTATCGATACACCAAGTATGTATCGATACA
5117 ATGTATCGATACAC
1 ATGTATCGATACAC
5131 AAAAAAATTG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 46 1.00
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.28
Consensus pattern (32 bp):
ATGTATCGATACACCAAGTATGTATCGATACA
Found at i:9809 original size:33 final size:33
Alignment explanation
Indices: 9772--9837 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
9762 ATTTGCCTGC
*
9772 ATGTATCGATACAGTGAATAATGTATCGATACA
1 ATGTATCAATACAGTGAATAATGTATCGATACA
* *
9805 ATGTATCAATACATTGAGTAATGTATCGATACA
1 ATGTATCAATACAGTGAATAATGTATCGATACA
9838 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.39, C:0.12, G:0.17, T:0.32
Consensus pattern (33 bp):
ATGTATCAATACAGTGAATAATGTATCGATACA
Found at i:9877 original size:13 final size:13
Alignment explanation
Indices: 9855--9912 Score: 53
Period size: 13 Copynumber: 4.0 Consensus size: 13
9845 GGCAGTAGCT
*
9855 TTGTAGCGATACA
1 TTGTATCGATACA
9868 TTGTATCGATACAACA
1 TTGTATCGAT---ACA
9884 CTTATGTATCGATACA
1 --T-TGTATCGATACA
9900 TTGTATCGATACA
1 TTGTATCGATACA
9913 AATTGTTGAA
Statistics
Matches: 38, Mismatches: 1, Indels: 12
0.75 0.02 0.24
Matches are distributed among these distances:
13 21 0.55
14 1 0.03
16 6 0.16
18 1 0.03
19 9 0.24
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:12376 original size:20 final size:20
Alignment explanation
Indices: 12348--12395 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
12338 AGAATCTATT
12348 AATAAATTC-CTTAGTGTATC
1 AATAAATTCACTTA-TGTATC
*
12368 AATATATTCACTTATGTATC
1 AATAAATTCACTTATGTATC
*
12388 GATAAATT
1 AATAAATT
12396 AGGTTTAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 20 0.83
21 4 0.17
ACGTcount: A:0.38, C:0.12, G:0.08, T:0.42
Consensus pattern (20 bp):
AATAAATTCACTTATGTATC
Found at i:13095 original size:37 final size:37
Alignment explanation
Indices: 13054--13175 Score: 208
Period size: 37 Copynumber: 3.3 Consensus size: 37
13044 ATTTGTTATA
*
13054 TGTTTGTGTTGATTAGTTTACTAGGTGTTTGTAAAAT
1 TGTTTATGTTGATTAGTTTACTAGGTGTTTGTAAAAT
13091 TGTTTATGTTGATTAGTTTACTAGGTGTTTGTAAAAT
1 TGTTTATGTTGATTAGTTTACTAGGTGTTTGTAAAAT
* *
13128 TCTTTATGTTGATTAGTTTACTAAGTGTTTGTAAAAT
1 TGTTTATGTTGATTAGTTTACTAGGTGTTTGTAAAAT
*
13165 TGTTTGTGTTG
1 TGTTTATGTTG
13176 TATGTTAAAC
Statistics
Matches: 80, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 80 1.00
ACGTcount: A:0.22, C:0.03, G:0.22, T:0.52
Consensus pattern (37 bp):
TGTTTATGTTGATTAGTTTACTAGGTGTTTGTAAAAT
Found at i:17060 original size:33 final size:32
Alignment explanation
Indices: 17018--17082 Score: 85
Period size: 32 Copynumber: 2.0 Consensus size: 32
17008 CACACCCAGA
*
17018 TGTATCGATACATGCTGCTTTGTATCAATACAT
1 TGTATCGATACATG-TGCATTGTATCAATACAT
* * *
17051 TGTATCGATATATGTTCATTGTATCCATACAT
1 TGTATCGATACATGTGCATTGTATCAATACAT
17083 GGACAAATTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
32 15 0.54
33 13 0.46
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.42
Consensus pattern (32 bp):
TGTATCGATACATGTGCATTGTATCAATACAT
Found at i:17150 original size:120 final size:120
Alignment explanation
Indices: 17005--17250 Score: 467
Period size: 120 Copynumber: 2.1 Consensus size: 120
16995 GAATGTATCG
*
17005 ATACACACCCAGATGTATCGATACATGCTGCTTTGTATCAATACATTGTATCGATATATGTTCAT
1 ATACACACCCAGATGTATCGATACATGCTGCTTTGTATCAATACATTATATCGATATATGTTCAT
*
17070 TGTATCCATACATGGACAAATTGTATCGATACATGAAACTGGCAGTAGCTACCCT
66 TGTATCCATACATGGACAAATTGTATCGATACATAAAACTGGCAGTAGCTACCCT
17125 ATACACACCCAGATGTATCGATACATGCTGCTTTGTATCAATACATTATATCGATATATGTTCAT
1 ATACACACCCAGATGTATCGATACATGCTGCTTTGTATCAATACATTATATCGATATATGTTCAT
17190 TGTATCCATACATGGACAAATTGTATCGATACATAAAACTGGCAGTAGCTACCCT
66 TGTATCCATACATGGACAAATTGTATCGATACATAAAACTGGCAGTAGCTACCCT
17245 A-ACACA
1 ATACACA
17251 TGATACAATG
Statistics
Matches: 124, Mismatches: 2, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
119 5 0.04
120 119 0.96
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.31
Consensus pattern (120 bp):
ATACACACCCAGATGTATCGATACATGCTGCTTTGTATCAATACATTATATCGATATATGTTCAT
TGTATCCATACATGGACAAATTGTATCGATACATAAAACTGGCAGTAGCTACCCT
Found at i:20520 original size:52 final size:52
Alignment explanation
Indices: 20373--20500 Score: 220
Period size: 52 Copynumber: 2.5 Consensus size: 52
20363 GAAATATGAG
* * *
20373 AATTTGCCTGTATGTATCGATACATTTCATACTGTATCGATACATCTGGGCA
1 AATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTAGGCA
*
20425 AATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTAGGCA
1 AATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTAGGCA
20477 AATTTGCCTGCATGTATCGATACA
1 AATTTGCCTGCATGTATCGATACA
20501 AAGATCAGTG
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 72 1.00
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.36
Consensus pattern (52 bp):
AATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTAGGCA
Found at i:20527 original size:13 final size:13
Alignment explanation
Indices: 20509--20533 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
20499 CAAAGATCAG
20509 TGTATCGATACAA
1 TGTATCGATACAA
20522 TGTATCGATACA
1 TGTATCGATACA
20534 TTTGAAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:20598 original size:19 final size:18
Alignment explanation
Indices: 20574--20671 Score: 81
Period size: 19 Copynumber: 5.8 Consensus size: 18
20564 TAGCTTATAT
20574 TGTATCGATACAAAACTTA
1 TGTATCGATAC-AAACTTA
20593 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
20606 TGTATCGATACAACACTTA
1 TGTATCGATACAA-ACTTA
*
20625 TATATCGATAC--A--T-
1 TGTATCGATACAAACTTA
20638 TGTATCGATACAACACTTTA
1 TGTATCGATACAA-AC-TTA
20658 TGTATCGATACAAA
1 TGTATCGATACAAA
20672 TCGTTGAAAT
Statistics
Matches: 64, Mismatches: 2, Indels: 26
0.70 0.02 0.28
Matches are distributed among these distances:
13 21 0.33
14 2 0.03
16 4 0.06
18 1 0.02
19 23 0.36
20 13 0.20
ACGTcount: A:0.38, C:0.17, G:0.11, T:0.34
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:20611 original size:13 final size:13
Alignment explanation
Indices: 20593--20649 Score: 51
Period size: 13 Copynumber: 3.9 Consensus size: 13
20583 ACAAAACTTA
20593 TGTATCGATACAT
1 TGTATCGATACAT
20606 TGTATCGATACAACACTT
1 TGTATCGAT---ACA--T
*
20624 ATATATCGATACAT
1 -TGTATCGATACAT
20638 TGTATCGATACA
1 TGTATCGATACA
20650 ACACTTTATG
Statistics
Matches: 36, Mismatches: 2, Indels: 12
0.72 0.04 0.24
Matches are distributed among these distances:
13 20 0.56
14 1 0.03
16 6 0.17
18 1 0.03
19 8 0.22
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:20613 original size:32 final size:32
Alignment explanation
Indices: 20572--20669 Score: 169
Period size: 32 Copynumber: 3.0 Consensus size: 32
20562 AGTAGCTTAT
*
20572 ATTGTATCGATACAAAACTTATGTATCGATAC
1 ATTGTATCGATACAACACTTATGTATCGATAC
*
20604 ATTGTATCGATACAACACTTATATATCGATAC
1 ATTGTATCGATACAACACTTATGTATCGATAC
20636 ATTGTATCGATACAACACTTTATGTATCGATAC
1 ATTGTATCGATACAACAC-TTATGTATCGATAC
20669 A
1 A
20670 AATCGTTGAA
Statistics
Matches: 62, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
32 48 0.77
33 14 0.23
ACGTcount: A:0.37, C:0.17, G:0.11, T:0.35
Consensus pattern (32 bp):
ATTGTATCGATACAACACTTATGTATCGATAC
Found at i:30505 original size:13 final size:13
Alignment explanation
Indices: 30487--30540 Score: 90
Period size: 13 Copynumber: 4.2 Consensus size: 13
30477 CAACATTCCC
30487 TGTATCGATACAT
1 TGTATCGATACAT
30500 TGTATCGATACAT
1 TGTATCGATACAT
*
30513 TGTATTGATACAT
1 TGTATCGATACAT
*
30526 TGTATCAATACAT
1 TGTATCGATACAT
30539 TG
1 TG
30541 GGTACTATTT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 38 1.00
ACGTcount: A:0.31, C:0.13, G:0.15, T:0.41
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:32424 original size:13 final size:13
Alignment explanation
Indices: 32406--32431 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32396 ACATGCTGCT
32406 TTGTATCGATACA
1 TTGTATCGATACA
32419 TTGTATCGATACA
1 TTGTATCGATACA
32432 AGTTCATTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:36144 original size:22 final size:22
Alignment explanation
Indices: 36112--36156 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
36102 GTGTAATAAA
* *
36112 AATTTTAAAAATTTTTTATTTT
1 AATTTTAAAAATATTCTATTTT
*
36134 AATTTTTAAAATATTCTATTTT
1 AATTTTAAAAATATTCTATTTT
36156 A
1 A
36157 TAAATTTTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (22 bp):
AATTTTAAAAATATTCTATTTT
Found at i:37059 original size:2 final size:2
Alignment explanation
Indices: 37052--37081 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
37042 TCTTATGATA
37052 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
37082 GTACACACGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:37656 original size:17 final size:18
Alignment explanation
Indices: 37628--37670 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 18
37618 TCTCATAATA
*
37628 AAAATGTAAAAATCAAAC
1 AAAATGTAAAAAGCAAAC
*
37646 AAAAT-TAAAAAGCAAAT
1 AAAATGTAAAAAGCAAAC
37663 AAAA-GTAA
1 AAAATGTAA
37671 TTTTATCTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 17 0.77
18 5 0.23
ACGTcount: A:0.70, C:0.07, G:0.07, T:0.16
Consensus pattern (18 bp):
AAAATGTAAAAAGCAAAC
Found at i:46801 original size:13 final size:13
Alignment explanation
Indices: 46783--46808 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
46773 CAATTTTTTG
46783 TGTATCGATACAT
1 TGTATCGATACAT
46796 TGTATCGATACAT
1 TGTATCGATACAT
46809 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:47548 original size:21 final size:21
Alignment explanation
Indices: 47507--47550 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
47497 CTCTCCTTTA
* *
47507 TCTCCCCCGTTTATTAATAAT
1 TCTCCCCCGTTAATCAATAAT
47528 TCTCCCCC-TTAATCAAGTAAT
1 TCTCCCCCGTTAATCAA-TAAT
47549 TC
1 TC
47551 ATATCAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.25, C:0.32, G:0.05, T:0.39
Consensus pattern (21 bp):
TCTCCCCCGTTAATCAATAAT
Found at i:49374 original size:13 final size:13
Alignment explanation
Indices: 49356--49394 Score: 78
Period size: 13 Copynumber: 3.0 Consensus size: 13
49346 ATAATCACCC
49356 TGTATCGATACAA
1 TGTATCGATACAA
49369 TGTATCGATACAA
1 TGTATCGATACAA
49382 TGTATCGATACAA
1 TGTATCGATACAA
49395 AGAAAAATGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:51493 original size:15 final size:15
Alignment explanation
Indices: 51473--51503 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
51463 ATTTCGTTTG
*
51473 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
51488 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
51503 G
1 G
51504 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:53336 original size:21 final size:21
Alignment explanation
Indices: 53307--53351 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
53297 AAGTTTTCAT
*
53307 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
53327 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
53349 TTT
1 TTT
53352 CAACTTGAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:55596 original size:13 final size:13
Alignment explanation
Indices: 55578--55603 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
55568 CAATTTTTTG
55578 TGTATCGATACAT
1 TGTATCGATACAT
55591 TGTATCGATACAT
1 TGTATCGATACAT
55604 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:63852 original size:20 final size:20
Alignment explanation
Indices: 63827--63951 Score: 97
Period size: 20 Copynumber: 5.7 Consensus size: 20
63817 TTTTAACTAG
63827 ATGTATCGATACATTGAAAA
1 ATGTATCGATACATTGAAAA
63847 ATGTATCGATACATCTGGATAAAAAGATAGA
1 ATGTATCGATACAT-T-G------A-A-A-A
*
63878 ATGTATCGATACATTGAAGA
1 ATGTATCGATACATTGAAAA
* * * *
63898 ATGTATGGATACATTCATAC
1 ATGTATCGATACATTGAAAA
63918 ATGTATCGATACATTGAAAA
1 ATGTATCGATACATTGAAAA
*
63938 ACGTATCGATACAT
1 ATGTATCGATACAT
63952 ATGAGTACTT
Statistics
Matches: 83, Mismatches: 11, Indels: 22
0.72 0.09 0.19
Matches are distributed among these distances:
20 59 0.71
21 1 0.01
22 2 0.02
23 1 0.01
28 1 0.01
29 2 0.02
30 2 0.02
31 15 0.18
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.30
Consensus pattern (20 bp):
ATGTATCGATACATTGAAAA
Found at i:64730 original size:49 final size:45
Alignment explanation
Indices: 64662--64776 Score: 140
Period size: 49 Copynumber: 2.5 Consensus size: 45
64652 AGATGAGAGG
* **
64662 AGTGCCAATGTGCCAATTCAAGGCCAACGACATTAGGCTAAGGGAAA
1 AGTGCCAATATGCTGATTCAAGGCCAACGACATTAGGCTAA--GAAA
* *
64709 AGTGGACCAATATGCTGATTCAAGGCCAACGACATTGGGCTAATAAA
1 AGT-G-CCAATATGCTGATTCAAGGCCAACGACATTAGGCTAAGAAA
*
64756 GGTGCCAATATGCTGATTCAA
1 AGTGCCAATATGCTGATTCAA
64777 TGCTAGCAAT
Statistics
Matches: 60, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
45 17 0.28
46 1 0.02
47 8 0.13
48 1 0.02
49 33 0.55
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.21
Consensus pattern (45 bp):
AGTGCCAATATGCTGATTCAAGGCCAACGACATTAGGCTAAGAAA
Found at i:64921 original size:71 final size:71
Alignment explanation
Indices: 64802--64978 Score: 291
Period size: 71 Copynumber: 2.5 Consensus size: 71
64792 ATAGTGGTGA
* *** *
64802 TTTGAAAAGGGTTGCCACCGACTTGCGTGGGCTTTTTTTTTTTTAAAAAGGTGCCACTAACTTAT
1 TTTGAAAAGAGTTGCCACCGACTTGCGTGGGCTTTTTTTTTAAAAAAAAGATGCCACTAACTTAT
64867 GTGGGC
66 GTGGGC
*
64873 TTTGAAAAGAGTTGCCACCGACTTGCGTGGGCTTTTTTTTTAAAAAAAATATGCCACTAACTTAT
1 TTTGAAAAGAGTTGCCACCGACTTGCGTGGGCTTTTTTTTTAAAAAAAAGATGCCACTAACTTAT
64938 GTGGGC
66 GTGGGC
*
64944 TTTGAAAAGAGTTGCCACCGACTTGTGTGGGCTTT
1 TTTGAAAAGAGTTGCCACCGACTTGCGTGGGCTTT
64979 GAAAAGAGTT
Statistics
Matches: 99, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
71 99 1.00
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.35
Consensus pattern (71 bp):
TTTGAAAAGAGTTGCCACCGACTTGCGTGGGCTTTTTTTTTAAAAAAAAGATGCCACTAACTTAT
GTGGGC
Found at i:65057 original size:28 final size:28
Alignment explanation
Indices: 64918--65826 Score: 995
Period size: 28 Copynumber: 32.1 Consensus size: 28
64908 TTTTTTAAAA
* *
64918 AAAATATGCCACTAACTTATGTGGGCTTTG
1 AAAAGATGCCACTGAC-T-TGTGGGCTTTG
*
64948 AAAAGAGTTGCCACCGACTTGTGTGGGCTTTG
1 AAAAGA--TGCCACTGAC-T-TGTGGGCTTTG
*
64980 AAAAGAGTTACCACT-AGCTTGTGGGCTTTG
1 AAAAGA--TGCCACTGA-CTTGTGGGCTTTG
65010 AAAAGAGTGCCACTGACTTGTGGGCTTTG
1 AAAAGA-TGCCACTGACTTGTGGGCTTTG
*
65039 AAAAGATGCCACTAACTTGTGGGCTTTG
1 AAAAGATGCCACTGACTTGTGGGCTTTG
*
65067 AAAAGAGTGCCACTGATTTGTGGGCTTTG
1 AAAAGA-TGCCACTGACTTGTGGGCTTTG
* * *
65096 AAAAGGTGCCATTGACTTATGGGCTTTG
1 AAAAGATGCCACTGACTTGTGGGCTTTG
65124 AAAAGAGTGCCACTGACTTGTGGGCTTTG
1 AAAAGA-TGCCACTGACTTGTGGGCTTTG
* *
65153 AAAGGGTGCCACTGACTTGCGTGGGCTTTG
1 AAAAGATGCCACTGACTT--GTGGGCTTTG
* *
65183 AAAGGATGCCACTAACTTGTGGGCTTTG
1 AAAAGATGCCACTGACTTGTGGGCTTTG
* *
65211 AAAGGGTGCCACTGACTTGTGGGCTTT-
1 AAAAGATGCCACTGACTTGTGGGCTTTG
* *
65238 AAATGGTGCCACTGACTTGTGGGCTTT-
1 AAAAGATGCCACTGACTTGTGGGCTTTG
* * *
65265 AAATGGTGCCACTAACTTGTGGGCTTTG
1 AAAAGATGCCACTGACTTGTGGGCTTTG
*
65293 AAAGGATGCCACTGACTTGTGGGCTTT-
1 AAAAGATGCCACTGACTTGTGGGCTTTG
* * **
65320 AAAAGGGTGCCTCTGACTCATGGGCTTTG
1 AAAA-GATGCCACTGACTTGTGGGCTTTG
* *
65349 AAAGGATGCCACTCACTTGTGGGCTTTG
1 AAAAGATGCCACTGACTTGTGGGCTTTG
* *
65377 AAAGGGTGCCACTGACTTGTGGGCTTTG
1 AAAAGATGCCACTGACTTGTGGGCTTTG
* * *
65405 AAAGGGTGCCACTGACTCGTGGGCTTTG
1 AAAAGATGCCACTGACTTGTGGGCTTTG
* *
65433 AAAGGATGCCACTGACTGGTGGGCTTTG
1 AAAAGATGCCACTGACTTGTGGGCTTTG
* * * *
65461 AAATGGTGTCACTGACTTGTGGGCTTTC
1 AAAAGATGCCACTGACTTGTGGGCTTTG
* *
65489 AAAAGGTGCCACTGACTTGTGGGCTTTC
1 AAAAGATGCCACTGACTTGTGGGCTTTG
65517 AAAAGATGCCACTGACTTGTGGGCTTTG
1 AAAAGATGCCACTGACTTGTGGGCTTTG
* * *
65545 AAAGGATGCCACTAACTTGTGGGCTTTA
1 AAAAGATGCCACTGACTTGTGGGCTTTG
* * *
65573 AAAAGGTGCCACTAACTCGTGGGCTTT-
1 AAAAGATGCCACTGACTTGTGGGCTTTG
* * *
65600 AAAAGGGTGCCACTGACTCGTAGGCTTTG
1 AAAA-GATGCCACTGACTTGTGGGCTTTG
* * *
65629 AAAGGATGCCATTGACTTGTTGGCTTTG
1 AAAAGATGCCACTGACTTGTGGGCTTTG
* *
65657 AAATGATGCCATTGACTTGTGGGCTTTG
1 AAAAGATGCCACTGACTTGTGGGCTTTG
* * *
65685 AAAGGATGCCATTAACTTGTGGGCTTTG
1 AAAAGATGCCACTGACTTGTGGGCTTTG
* * * * *
65713 AAAGGATGCCATTAACTTGTGGACTTCG
1 AAAAGATGCCACTGACTTGTGGGCTTTG
* *
65741 AAAGGGTGCCACTGACTTGTGGGCTTT-
1 AAAAGATGCCACTGACTTGTGGGCTTTG
* *
65768 AAAAGGATGCCATTAACTTGTGGGCTTT-
1 AAAA-GATGCCACTGACTTGTGGGCTTTG
* *
65796 AAAAGGGTGCCACTAACTTGTGGGCTTTG
1 AAAA-GATGCCACTGACTTGTGGGCTTTG
65825 AA
1 AA
65827 GAAATGAACG
Statistics
Matches: 780, Mismatches: 84, Indels: 31
0.87 0.09 0.03
Matches are distributed among these distances:
27 62 0.08
28 550 0.71
29 82 0.11
30 49 0.06
31 2 0.00
32 35 0.04
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.29
Consensus pattern (28 bp):
AAAAGATGCCACTGACTTGTGGGCTTTG
Found at i:67066 original size:26 final size:24
Alignment explanation
Indices: 67037--67086 Score: 55
Period size: 25 Copynumber: 2.0 Consensus size: 24
67027 TCATCTGGAC
* *
67037 TCCTTTCTGTTTTTTTGTTATTTTTT
1 TCCTTGCT-TTTTTTTGTTTTTTT-T
*
67063 TCCTTGGTTTTTTTTGTTTTTTTT
1 TCCTTGCTTTTTTTTGTTTTTTTT
67087 GGTATGAAGG
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
24 1 0.05
25 14 0.67
26 6 0.29
ACGTcount: A:0.02, C:0.10, G:0.10, T:0.78
Consensus pattern (24 bp):
TCCTTGCTTTTTTTTGTTTTTTTT
Found at i:83617 original size:29 final size:30
Alignment explanation
Indices: 83569--83786 Score: 99
Period size: 34 Copynumber: 6.9 Consensus size: 30
83559 TCACCCTTCA
*
83569 AAAGCCCACAAGTCAGTGGCA-TCTTTTTT
1 AAAGCCCACAACTCAGTGGCACTCTTTTTT
83598 AAAGCCCACAACTCCA-TGGCACTCTTTTTCCTT
1 AAAGCCCACAACT-CAGTGGCACTC-TTTT--TT
* * * *
83631 CTAAGTCCACAACTCTGTGGCAC-C--GTTT
1 -AAAGCCCACAACTCAGTGGCACTCTTTTTT
* *
83659 -AAGCCCACGACTCCGTGGCACTCTTTTTCCTT
1 AAAGCCCACAACTCAGTGGCACTC-TTTT--TT
* * * *
83691 CTAAGTCCACAACTCTGTGGCACCTTTTTCTTTT
1 -AAAGCCCACAACTCAGTGGCA-C-TCTT-TTTT
* *
83725 TAAGCCCACAACTCCGTGGCACTCTTTCTCCTT
1 AAAGCCCACAACTCAGTGGCACTCTTT-T--TT
* *
83758 CTAAGTCCACAACTCTA-TGGCACTCTTTT
1 -AAAGCCCACAACTC-AGTGGCACTCTTTT
83787 ACGTCCACAG
Statistics
Matches: 148, Mismatches: 18, Indels: 42
0.71 0.09 0.20
Matches are distributed among these distances:
26 18 0.12
27 1 0.01
28 2 0.01
29 17 0.11
30 7 0.05
31 8 0.05
32 3 0.02
33 26 0.18
34 60 0.41
35 3 0.02
36 3 0.02
ACGTcount: A:0.21, C:0.33, G:0.13, T:0.33
Consensus pattern (30 bp):
AAAGCCCACAACTCAGTGGCACTCTTTTTT
Found at i:83643 original size:34 final size:34
Alignment explanation
Indices: 83603--83786 Score: 197
Period size: 34 Copynumber: 5.7 Consensus size: 34
83593 TTTTTAAAGC
*
83603 CCACAACTCCATGGCACTCTTTTTCCTTCTAAGT
1 CCACAACTCCGTGGCACTCTTTTTCCTTCTAAGT
* * *
83637 CCACAACTCTGTGGCA--C-----CGTT-TAAGC
1 CCACAACTCCGTGGCACTCTTTTTCCTTCTAAGT
*
83663 CCACGACTCCGTGGCACTCTTTTTCCTTCTAAGT
1 CCACAACTCCGTGGCACTCTTTTTCCTTCTAAGT
* * * *
83697 CCACAACTCTGTGGCAC-CTTTTTCTTTTTAAGC
1 CCACAACTCCGTGGCACTCTTTTTCCTTCTAAGT
*
83730 CCACAACTCCGTGGCACTCTTTCTCCTTCTAAGT
1 CCACAACTCCGTGGCACTCTTTTTCCTTCTAAGT
**
83764 CCACAACTCTATGGCACTCTTTT
1 CCACAACTCCGTGGCACTCTTTT
83787 ACGTCCACAG
Statistics
Matches: 120, Mismatches: 21, Indels: 18
0.75 0.13 0.11
Matches are distributed among these distances:
26 18 0.15
27 3 0.03
28 1 0.01
32 1 0.01
33 32 0.27
34 65 0.54
ACGTcount: A:0.19, C:0.35, G:0.12, T:0.34
Consensus pattern (34 bp):
CCACAACTCCGTGGCACTCTTTTTCCTTCTAAGT
Found at i:83672 original size:60 final size:62
Alignment explanation
Indices: 83599--83817 Score: 275
Period size: 60 Copynumber: 3.5 Consensus size: 62
83589 ATCTTTTTTA
*
83599 AAGCCCACAACTCCATGGCACTCTTTTTCCTTCTAAGTCCACAACTCTGTGGCAC-C-GTTT
1 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCTGTGGCACTCTGTTT
* *
83659 AAGCCCACGACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCTGTGGCACCTTTTTCTTT
1 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCTGTGGCA-C----TCTGT
83724 TT
61 TT
* *
83726 AAGCCCACAACTCCGTGGCACTCTTTCTCCTTCTAAGTCCACAACTCTATGGCACTCT-TTT
1 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCTGTGGCACTCTGTTT
* * * * *
83787 ACGTCCACAGCTTCGTGGCA-TCTTTCTCCTT
1 AAGCCCACAACTCCGTGGCACTCTTTTTCCTT
83818 TTCAAAAGCC
Statistics
Matches: 142, Mismatches: 10, Indels: 14
0.86 0.06 0.08
Matches are distributed among these distances:
60 63 0.44
61 20 0.14
62 3 0.02
66 2 0.01
67 54 0.38
ACGTcount: A:0.19, C:0.35, G:0.13, T:0.33
Consensus pattern (62 bp):
AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCTGTGGCACTCTGTTT
Found at i:83764 original size:67 final size:68
Alignment explanation
Indices: 83656--83786 Score: 228
Period size: 67 Copynumber: 1.9 Consensus size: 68
83646 TGTGGCACCG
* * *
83656 TTTAAGCCCACGACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCTGTGGCAC-CTTTTT
1 TTTAAGCCCACAACTCCGTGGCACTCTTTCTCCTTCTAAGTCCACAACTCTATGGCACTCTTTTT
83720 CTT
66 CTT
83723 TTTAAGCCCACAACTCCGTGGCACTCTTTCTCCTTCTAAGTCCACAACTCTATGGCACTCTTTT
1 TTTAAGCCCACAACTCCGTGGCACTCTTTCTCCTTCTAAGTCCACAACTCTATGGCACTCTTTT
83787 ACGTCCACAG
Statistics
Matches: 60, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
67 55 0.92
68 5 0.08
ACGTcount: A:0.18, C:0.34, G:0.12, T:0.36
Consensus pattern (68 bp):
TTTAAGCCCACAACTCCGTGGCACTCTTTCTCCTTCTAAGTCCACAACTCTATGGCACTCTTTTT
CTT
Found at i:83811 original size:127 final size:130
Alignment explanation
Indices: 83593--83865 Score: 349
Period size: 127 Copynumber: 2.1 Consensus size: 130
83583 AGTGGCATCT
* *
83593 TTTTTAAAGCCCACAACTCCATGGCACTCTTTTTCCTTCTAAGTCCACAACTCTGTGGCACCGTT
1 TTTTT-AAGCCCACAACTCCATGGCACTCTTTCTCCTTCTAAGTCCACAACTCTATGGCACCGTT
* * * *
83658 TAAGCCCACGACTCCGTGGCACTCTTTTTCC-TTC-TAAGTCCACAACTCTGTGGC-ACCTTTTT
65 TAAGCCCACGACTCCGTGGCACTCTTTCTCCTTTCAAAAGCCCACAACTCGGTGGCAACCTTTTT
83720 C
130 C
* *
83721 TTTTTAAGCCCACAACTCCGTGGCACTCTTTCTCCTTCTAAGTCCACAACTCTATGGCACTCTTT
1 TTTTTAAGCCCACAACTCCATGGCACTCTTTCTCCTTCTAAGTCCACAACTCTATGGCAC-CGTT
* * * *
83786 TACGTCCAC-AGCTTCGTGGCA-TCTTTCTCCTTTTCAAAAGCCCACAAGTCGGTGGCAACCTTT
65 TAAGCCCACGA-CTCCGTGGCACTCTTTCTCC-TTTCAAAAGCCCACAACTCGGTGGCAACCTTT
83849 TTC
128 TTC
* *
83852 TTCTAAAGCCCACA
1 TTTTTAAGCCCACA
83866 CAAGTTGGTG
Statistics
Matches: 125, Mismatches: 14, Indels: 9
0.84 0.09 0.06
Matches are distributed among these distances:
127 61 0.49
128 24 0.19
129 3 0.02
130 16 0.13
131 21 0.17
ACGTcount: A:0.21, C:0.33, G:0.13, T:0.33
Consensus pattern (130 bp):
TTTTTAAGCCCACAACTCCATGGCACTCTTTCTCCTTCTAAGTCCACAACTCTATGGCACCGTTT
AAGCCCACGACTCCGTGGCACTCTTTCTCCTTTCAAAAGCCCACAACTCGGTGGCAACCTTTTTC
Found at i:83894 original size:32 final size:31
Alignment explanation
Indices: 83853--83989 Score: 204
Period size: 32 Copynumber: 4.4 Consensus size: 31
83843 ACCTTTTTCT
*
83853 TCTAAAGCCCACACAAGTTGGTGGCAATCCCC
1 TCTAAAGCCCACACAAGTCGGTGGCAA-CCCC
*
83885 TCTAAAGCCCACACAAGTCGGTGGCAACCCT
1 TCTAAAGCCCACACAAGTCGGTGGCAACCCC
*
83916 TCTCAAAGCCCACACAACTCGGTGGCAACCCTC
1 TCT-AAAGCCCACACAAGTCGGTGGCAACCC-C
*
83949 TCTAAAGCCCACACAAGTCGGTGGCAACCCT
1 TCTAAAGCCCACACAAGTCGGTGGCAACCCC
83980 TCT-AAGCCCA
1 TCTAAAGCCCA
83990 ATATCGCTGG
Statistics
Matches: 97, Mismatches: 6, Indels: 6
0.89 0.06 0.06
Matches are distributed among these distances:
30 7 0.07
31 9 0.09
32 78 0.80
33 3 0.03
ACGTcount: A:0.28, C:0.37, G:0.18, T:0.17
Consensus pattern (31 bp):
TCTAAAGCCCACACAAGTCGGTGGCAACCCC
Found at i:83940 original size:64 final size:64
Alignment explanation
Indices: 83828--83989 Score: 231
Period size: 64 Copynumber: 2.5 Consensus size: 64
83818 TTCAAAAGCC
* * *
83828 CACAAGTCGGTGGCAACCTTTTTCTTCTAAAGCCCACACAAGTTGGTGGCAATCCC-CTCTAAAG
1 CACAAGTCGGTGGCAACC--CTTC-TC-AAAGCCCACACAACTCGGTGGCAA-CCCTCTCTAAAG
83892 CCCA
61 CCCA
83896 CACAAGTCGGTGGCAACCCTTCTCAAAGCCCACACAACTCGGTGGCAACCCTCTCTAAAGCCCA
1 CACAAGTCGGTGGCAACCCTTCTCAAAGCCCACACAACTCGGTGGCAACCCTCTCTAAAGCCCA
83960 CACAAGTCGGTGGCAACCCTTCT--AAGCCCA
1 CACAAGTCGGTGGCAACCCTTCTCAAAGCCCA
83990 ATATCGCTGG
Statistics
Matches: 90, Mismatches: 3, Indels: 8
0.89 0.03 0.08
Matches are distributed among these distances:
62 7 0.08
63 3 0.03
64 57 0.63
65 2 0.02
66 3 0.03
68 18 0.20
ACGTcount: A:0.27, C:0.36, G:0.18, T:0.19
Consensus pattern (64 bp):
CACAAGTCGGTGGCAACCCTTCTCAAAGCCCACACAACTCGGTGGCAACCCTCTCTAAAGCCCA
Found at i:84089 original size:43 final size:43
Alignment explanation
Indices: 83977--84344 Score: 450
Period size: 43 Copynumber: 8.1 Consensus size: 43
83967 CGGTGGCAAC
* * *
83977 CCTTCTAAGCCCAATATCGCTGGCCTTAAATCAGCATATTGGCA
1 CCTT-TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* *
84021 CCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
1 ----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
84070 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* *
84113 CCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
1 ----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
*
84162 CCTTTAAG-CCTAATATCGCTGGCCTTGAATCAGCATATTGGCA
1 CCTTTAAGTCC-AATATAGCTGGCCTTGAATCAGCATATTGGCA
84205 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * *
84248 CCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGTACATTGGCA
1 ----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
84297 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
84340 CCTTT
1 CCTTT
84345 TCCATCTTTA
Statistics
Matches: 285, Mismatches: 19, Indels: 37
0.84 0.06 0.11
Matches are distributed among these distances:
42 2 0.01
43 159 0.56
44 2 0.01
45 3 0.01
47 2 0.01
48 1 0.00
49 113 0.40
50 3 0.01
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.31
Consensus pattern (43 bp):
CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
Found at i:84144 original size:92 final size:86
Alignment explanation
Indices: 83977--84344 Score: 450
Period size: 92 Copynumber: 4.1 Consensus size: 86
83967 CGGTGGCAAC
* * * *
83977 CCTTCTAAGCCCAATATCGCTGGCCTTAAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATG
1 CCTT-TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA----C--CTTTAAGTCCAATA
84042 TAGCTGGCCTTGAATCAGCACATTGGCA
59 TAGCTGGCCTTGAATCAGCACATTGGCA
*
84070 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA----C--CTTTAAGTCCAATAT
84135 AGCTGGCCTTGAATCAGCACATTGGCA
60 AGCTGGCCTTGAATCAGCACATTGGCA
*
84162 CCTTTAAG-CCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTG
1 CCTTTAAGTCC-AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTG
*
84226 GCCTTGAATCAGCATATTGGCA
65 GCCTTGAATCAGCACATTGGCA
* * *
84248 CCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGTACATTGGCACCTTTAAGTCCAATAT
1 ----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATAT
*
84313 AGCTGGCCTTGAATCAGCATATTGGCA
60 AGCTGGCCTTGAATCAGCACATTGGCA
84340 CCTTT
1 CCTTT
84345 TCCATCTTTA
Statistics
Matches: 257, Mismatches: 10, Indels: 23
0.89 0.03 0.08
Matches are distributed among these distances:
86 44 0.17
88 2 0.01
90 1 0.00
91 2 0.01
92 202 0.79
93 6 0.02
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.31
Consensus pattern (86 bp):
CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTGG
CCTTGAATCAGCACATTGGCA
Found at i:84235 original size:135 final size:135
Alignment explanation
Indices: 84028--84344 Score: 582
Period size: 135 Copynumber: 2.3 Consensus size: 135
84018 GCACCTTCAT
* *
84028 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTGGC
84093 CTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATT
66 CTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATT
84158 GGCAC
131 GGCAC
*
84163 CTTTAAG-CCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTGG
1 CTTTAAGTCC-AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTGG
*
84227 CCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGTACAT
65 CCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACAT
84292 TGGCAC
130 TGGCAC
84298 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTT
84345 TCCATCTTTA
Statistics
Matches: 175, Mismatches: 5, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
134 2 0.01
135 171 0.98
136 2 0.01
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.31
Consensus pattern (135 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCCAATATAGCTGGC
CTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATT
GGCAC
Found at i:84322 original size:22 final size:22
Alignment explanation
Indices: 84255--84322 Score: 52
Period size: 22 Copynumber: 3.1 Consensus size: 22
84245 GCACCTTCAT
*
84255 CTTTAAGTCCAATGTAGCTGGC
1 CTTTAAGTCCAATATAGCTGGC
* * * *
84277 CTTGAA-T-CAGTACA-TTGGCAC
1 CTTTAAGTCCAATATAGCTGG--C
84298 CTTTAAGTCCAATATAGCTGGC
1 CTTTAAGTCCAATATAGCTGGC
84320 CTT
1 CTT
84323 GAATCAGCAT
Statistics
Matches: 32, Mismatches: 9, Indels: 10
0.63 0.18 0.20
Matches are distributed among these distances:
19 3 0.09
20 4 0.12
21 7 0.22
22 10 0.31
23 5 0.16
24 3 0.09
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (22 bp):
CTTTAAGTCCAATATAGCTGGC
Found at i:84376 original size:52 final size:55
Alignment explanation
Indices: 84298--84635 Score: 221
Period size: 52 Copynumber: 6.1 Consensus size: 55
84288 ACATTGGCAC
* *
84298 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CC-TTTTC-CAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* *
84350 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* * * * * * **
84405 CTTTAAGCCCAATATCGTTGGTCGTGAATCAACATGTTGGCATCTTTATCACTTTTCTCATCTTC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATT-G-A-C---ATC-C-TTT-T--TC-TC
84470 AT
54 AT
* * *
84472 CTTTAAGTCCAATATTGCTGGCCTTGAATTAGCATATT-AGCA-CC---TTCATCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGA-CATCCTTTTTC-TCAT
** * * * *
84524 CTTTAAAACCCAATGTTGTTGGCCTTGAATCAGCACATTGGCA---TTTTTCTCAT
1 CTTT-AAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* * * * * *
84577 CTTCAAGTCTAATGTCGCTGACCGTGAATCAGCACATTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
84632 CTTT
1 CTTT
84636 GAACCCAATA
Statistics
Matches: 222, Mismatches: 41, Indels: 43
0.73 0.13 0.14
Matches are distributed among these distances:
52 78 0.35
53 39 0.18
54 9 0.04
55 44 0.20
56 1 0.00
57 1 0.00
58 1 0.00
59 1 0.00
60 1 0.00
61 4 0.02
62 1 0.00
63 3 0.01
64 3 0.01
66 2 0.01
67 34 0.15
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.38
Consensus pattern (55 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
Found at i:84549 original size:227 final size:228
Alignment explanation
Indices: 84316--84728 Score: 586
Period size: 227 Copynumber: 1.8 Consensus size: 228
84306 CCAATATAGC
* * * *
84316 TGGCCTTGAATCAGCATATTGGCACCTTTTC-CATCTTTAAGT-TCAATGTAGCTGGCCTTGAAT
1 TGGCCTTGAATCAGCACATTGGCA-CTTTTCTCATCTTCAAGTCT-AATGTAGCTGACCGTGAAT
*
84379 CAGCACATTGACATCCTTTTTCTCATCTTT-AAGCCCAATATCGTTGG-TCGTGAATCAACATGT
64 CAGCACATTGACATCCTTTTTCTCATCTTTGAA-CCCAATATCGTTGGCT-GTGAATCAACATAT
** * * *
84442 TGG-CATCTTTATCACTTTTC-TCATCTTCATCTTTAAGTCCAATATTGCTGGCCTTGAATTAGC
127 TGGTC-TCTTTATCACTCCTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTCGAATTAGC
84505 ATATTAGCACCTTCATCATCTTTAAAACCCAATGTTGT
191 ATATTAGCACCTTCATCATCTTTAAAACCCAATGTTGT
* *
84543 TGGCCTTGAATCAGCACATTGGCATTTTTCTCATCTTCAAGTCTAATGTCGCTGACCGTGAATCA
1 TGGCCTTGAATCAGCACATTGGCACTTTTCTCATCTTCAAGTCTAATGTAGCTGACCGTGAATCA
*
84608 GCACATTGACATCCTTTTTCTCATCTTTGAACCCAATATCGTTGGCTGTGAATCAACGTATTGGT
66 GCACATTGACATCCTTTTTCTCATCTTTGAACCCAATATCGTTGGCTGTGAATCAACATATTGGT
* * * *
84673 CTTTTTATCACTCCTCATCCTCATCATCTTTAAGTCCAGTGTTGCAGGCCTCGAAT
131 CTCTTTATCACTCCTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTCGAAT
84729 CTGCACAATG
Statistics
Matches: 163, Mismatches: 17, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
226 5 0.03
227 120 0.74
228 38 0.23
ACGTcount: A:0.23, C:0.25, G:0.15, T:0.37
Consensus pattern (228 bp):
TGGCCTTGAATCAGCACATTGGCACTTTTCTCATCTTCAAGTCTAATGTAGCTGACCGTGAATCA
GCACATTGACATCCTTTTTCTCATCTTTGAACCCAATATCGTTGGCTGTGAATCAACATATTGGT
CTCTTTATCACTCCTCATCATCATCATCTTTAAGTCCAATATTGCAGGCCTCGAATTAGCATATT
AGCACCTTCATCATCTTTAAAACCCAATGTTGT
Found at i:84577 original size:53 final size:52
Alignment explanation
Indices: 84468--84662 Score: 133
Period size: 52 Copynumber: 3.7 Consensus size: 52
84458 TTTCTCATCT
** * * * * **
84468 TCATCTTTAAGTCCAATATTGCTGGCCTTGAATTAGCATATTAGCA-CCTTC
1 TCATCTTTAAACCCAATATCGCTGGCCTTGAATCAGCACATTGGCATTTTTC
* * *
84519 ATCATCTTTAAAACCCAATGTTGTTGGCCTTGAATCAGCACATTGGCATTTTTC
1 -TCATCTTT-AAACCCAATATCGCTGGCCTTGAATCAGCACATTGGCATTTTTC
* ** * * * * *
84573 TCATCTTCAAGTCTAATGTCGCTGACCGTGAATCAGCACATTGACATCCTTTTTC
1 TCATCTTTAAACCCAATATCGCTGGCCTTGAATCAGCACATTGGCA---TTTTTC
* *
84628 TCATCTTTGAACCCAATATCGTTGG-CTGTGAATCA
1 TCATCTTTAAACCCAATATCGCTGGCCT-TGAATCA
84663 ACGTATTGGT
Statistics
Matches: 110, Mismatches: 27, Indels: 9
0.75 0.18 0.06
Matches are distributed among these distances:
52 38 0.35
53 38 0.35
54 4 0.04
55 30 0.27
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.36
Consensus pattern (52 bp):
TCATCTTTAAACCCAATATCGCTGGCCTTGAATCAGCACATTGGCATTTTTC
Found at i:86031 original size:20 final size:20
Alignment explanation
Indices: 85986--86032 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 20
85976 GTTAACAGCC
*
85986 CATGATTCATGCATTTTAAG
1 CATGTTTCATGCATTTTAAG
86006 CTATGTTTCATGCA-TTTACAG
1 C-ATGTTTCATGCATTTTA-AG
86027 CATGTT
1 CATGTT
86033 CAGGACCTCC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
20 10 0.42
21 14 0.58
ACGTcount: A:0.26, C:0.17, G:0.15, T:0.43
Consensus pattern (20 bp):
CATGTTTCATGCATTTTAAG
Found at i:88649 original size:22 final size:23
Alignment explanation
Indices: 88624--88668 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
88614 ATTCTTATTA
*
88624 ATTAAGCAAATAATG-ATGAATG
1 ATTAAGAAAATAATGTATGAATG
* *
88646 ATTATGAAAATGATGTATGAATG
1 ATTAAGAAAATAATGTATGAATG
88669 CCATGAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.47, C:0.02, G:0.20, T:0.31
Consensus pattern (23 bp):
ATTAAGAAAATAATGTATGAATG
Found at i:92434 original size:20 final size:20
Alignment explanation
Indices: 92388--92442 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
92378 ATTTTTCACA
* *
92388 AATGTATCGATACATTTTTC
1 AATGTATCGATACATGTATC
* *
92408 AACGTATCGATACATGTATG
1 AATGTATCGATACATGTATC
*
92428 AATGTATTGATACAT
1 AATGTATCGATACAT
92443 TCTATGTTTT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.38
Consensus pattern (20 bp):
AATGTATCGATACATGTATC
Found at i:92485 original size:20 final size:20
Alignment explanation
Indices: 92460--92536 Score: 100
Period size: 20 Copynumber: 3.9 Consensus size: 20
92450 TTTTACCCAG
92460 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * *
92480 ATGTATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
* *
92500 ATGTATCGATATATTCTTCA
1 ATGTATCGATACATTTTTCA
*
92520 ATGTATCGATATATTTT
1 ATGTATCGATACATTTT
92537 GTCTTTTTAC
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.31, C:0.12, G:0.13, T:0.44
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:92555 original size:71 final size:72
Alignment explanation
Indices: 92480--92660 Score: 222
Period size: 73 Copynumber: 2.5 Consensus size: 72
92470 ACATTTTTCA
* * * *
92480 ATGTATCGATACATGTATGAATGTATCGATATAT-TCTTCAATG-TATCGATATATTTTGTCTTT
1 ATGTATCGATACATGTATGAATGTATCGATACATGT-ATCAATGATATCGATACATTCTGTCTTT
*
92543 TTACCTAG
65 TTACCCAG
* * * *
92551 ATGTATCGATACATTTTTCAATGTATCGATACATGTATGAATGTATATCGATACATTCTGTCTTT
1 ATGTATCGATACATGTATGAATGTATCGATACATGTATCAATG-ATATCGATACATTCTGTCTTT
92616 TTACCCAG
65 TTACCCAG
92624 ATGTATCGATACATTGTATGAATGTATATCGATACAT
1 ATGTATCGATACA-TGTATGAATG--TATCGATACAT
92661 TCTGTCTTTT
Statistics
Matches: 92, Mismatches: 12, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
71 35 0.38
72 1 0.01
73 38 0.41
74 7 0.08
76 11 0.12
ACGTcount: A:0.30, C:0.14, G:0.14, T:0.42
Consensus pattern (72 bp):
ATGTATCGATACATGTATGAATGTATCGATACATGTATCAATGATATCGATACATTCTGTCTTTT
TACCCAG
Found at i:92576 original size:20 final size:20
Alignment explanation
Indices: 92551--92607 Score: 69
Period size: 20 Copynumber: 2.8 Consensus size: 20
92541 TTTTACCTAG
*
92551 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTATCA
* *
92571 ATGTATCGATACATGTATGA
1 ATGTATCGATACATTTATCA
92591 ATGTATATCGATACATT
1 ATG--TATCGATACATT
92608 CTGTCTTTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
20 20 0.65
22 11 0.35
ACGTcount: A:0.33, C:0.12, G:0.14, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATTTATCA
Found at i:92632 original size:31 final size:31
Alignment explanation
Indices: 92596--92692 Score: 95
Period size: 31 Copynumber: 3.4 Consensus size: 31
92586 TATGAATGTA
92596 TATCGATACATTCTGTCTTTTTACCCAGATG
1 TATCGATACATTCTGTCTTTTTACCCAGATG
* * *
92627 TATCGATACA-T-TG---TATGA---ATG-TA
1 TATCGATACATTCTGTCTTTTTACCCA-GATG
92650 TATCGATACATTCTGTCTTTTTACCCAGATG
1 TATCGATACATTCTGTCTTTTTACCCAGATG
92681 TATCGATACATT
1 TATCGATACATT
92693 GAATAATGTA
Statistics
Matches: 50, Mismatches: 6, Indels: 20
0.66 0.08 0.26
Matches are distributed among these distances:
23 12 0.24
24 2 0.04
25 2 0.04
26 3 0.06
28 3 0.06
29 2 0.04
30 2 0.04
31 24 0.48
ACGTcount: A:0.27, C:0.19, G:0.13, T:0.41
Consensus pattern (31 bp):
TATCGATACATTCTGTCTTTTTACCCAGATG
Found at i:92651 original size:54 final size:54
Alignment explanation
Indices: 92571--92711 Score: 245
Period size: 54 Copynumber: 2.7 Consensus size: 54
92561 ACATTTTTCA
92571 ATGTATCGATACA-TGTATGAATGTATATCGATACATTCTGTCTTTTTACCCAG
1 ATGTATCGATACATTGTATGAATGTATATCGATACATTCTGTCTTTTTACCCAG
92624 ATGTATCGATACATTGTATGAATGTATATCGATACATTCTGTCTTTTTACCCAG
1 ATGTATCGATACATTGTATGAATGTATATCGATACATTCTGTCTTTTTACCCAG
*
92678 ATGTATCGATACATTGAAT-AATG--TATCGATACAT
1 ATGTATCGATACATTGTATGAATGTATATCGATACAT
92712 CTAGTTAAAA
Statistics
Matches: 86, Mismatches: 1, Indels: 4
0.95 0.01 0.04
Matches are distributed among these distances:
51 11 0.13
53 17 0.20
54 58 0.67
ACGTcount: A:0.30, C:0.16, G:0.15, T:0.39
Consensus pattern (54 bp):
ATGTATCGATACATTGTATGAATGTATATCGATACATTCTGTCTTTTTACCCAG
Found at i:94998 original size:97 final size:97
Alignment explanation
Indices: 94852--95089 Score: 406
Period size: 97 Copynumber: 2.5 Consensus size: 97
94842 TATCAAGAAT
* * *
94852 ACTCCAACCACATTCCTCCGAGGGGATACTCCAACCCCACTTTTAAACGCATCAAAGTTTAAATT
1 ACTCCAACCCCATTCCTCCGAAGGGATACTCCAACCCCGCTTTTAAACGCATCAAAGTTTAAATT
94917 TTATTCTCACTTAAATTGTCATCATCGAGGAC
66 TTATTCTCACTTAAATTGTCATCATCGAGGAC
94949 ACTCCAACCCCATTCCTCCGAAGGGATACTCCAACCCCGCTTTTAAACGCATCAAAGTTTAAATT
1 ACTCCAACCCCATTCCTCCGAAGGGATACTCCAACCCCGCTTTTAAACGCATCAAAGTTTAAATT
*
95014 TTATTCTCACTTAAATTGTCATCATCGGGGAC
66 TTATTCTCACTTAAATTGTCATCATCGAGGAC
* *
95046 ACTCCAACCCCATTCCTCC-AAGGGGATACTCCAATCCCGTTTTT
1 ACTCCAACCCCATTCCTCCGAA-GGGATACTCCAACCCCGCTTTT
95090 CAATCAAAAA
Statistics
Matches: 134, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
96 2 0.01
97 132 0.99
ACGTcount: A:0.29, C:0.31, G:0.12, T:0.29
Consensus pattern (97 bp):
ACTCCAACCCCATTCCTCCGAAGGGATACTCCAACCCCGCTTTTAAACGCATCAAAGTTTAAATT
TTATTCTCACTTAAATTGTCATCATCGAGGAC
Found at i:97742 original size:79 final size:79
Alignment explanation
Indices: 97642--97843 Score: 228
Period size: 79 Copynumber: 2.6 Consensus size: 79
97632 AATAACAGGG
* * * * *
97642 TTGGAGTGTTCCCTT-GAAAATAACGGGGCTGGAGTATCCCCGGTTGTGAGAAATCGATGA-TTA
1 TTGGAGT-ATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAAT-ATTTA
*
97705 GAAAAAAAAATCGGGA
64 GAAAAAAAAACCGGGA
* * *
97721 TTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATATTTTGG
1 TTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTAGA
* * * *
97786 GAATAAAGCCGGGG
66 AAAAAAAACCGGGA
* * *
97800 TTGGAGTATCCCCTCGGAAGTAACGGGGTTGGAGTATCCCCGAT
1 TTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCGAT
97844 GAAATAACGA
Statistics
Matches: 104, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
78 7 0.07
79 97 0.93
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (79 bp):
TTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTAGA
AAAAAAAACCGGGA
Found at i:97835 original size:28 final size:28
Alignment explanation
Indices: 97795--97864 Score: 95
Period size: 28 Copynumber: 2.5 Consensus size: 28
97785 GGAATAAAGC
** *
97795 CGGGGTTGGAGTATCCCCTCGGAAGTAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
97823 CGGGGTTGGAGTATCCCCGATGAAATAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
97851 CGAGGTTGGAGTAT
1 CGGGGTTGGAGTAT
97865 TCTCGATTGT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.24, C:0.17, G:0.36, T:0.23
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGAGGAAATAA
Found at i:97924 original size:52 final size:52
Alignment explanation
Indices: 97855--97979 Score: 128
Period size: 52 Copynumber: 2.4 Consensus size: 52
97845 AAATAACGAG
* * * * *
97855 GTTGGAGTATTCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATC-GGA
1 GTTGGAGTATCCCCGATTGTGAAAAATTGG-AGTTTTGAAAATAAAACCAGGA
** * *
97907 GTTGGAGTATCCCCGATTAAAGGAAAATTGGCGTTTTGAAAATAAAACCAGGA
1 GTTGGAGTATCCCCGATT-GTGAAAAATTGGAGTTTTGAAAATAAAACCAGGA
*
97960 -TTGGAATATCCCCGATTGTG
1 GTTGGAGTATCCCCGATTGTG
97980 GAGAATTGAG
Statistics
Matches: 59, Mismatches: 12, Indels: 5
0.78 0.16 0.07
Matches are distributed among these distances:
51 1 0.02
52 46 0.78
53 12 0.20
ACGTcount: A:0.33, C:0.11, G:0.25, T:0.31
Consensus pattern (52 bp):
GTTGGAGTATCCCCGATTGTGAAAAATTGGAGTTTTGAAAATAAAACCAGGA
Found at i:100355 original size:13 final size:13
Alignment explanation
Indices: 100337--100362 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
100327 ACAAAGATCC
100337 ATGTATCGATACA
1 ATGTATCGATACA
100350 ATGTATCGATACA
1 ATGTATCGATACA
100363 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:100358 original size:33 final size:33
Alignment explanation
Indices: 100316--100382 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
100306 AAAATTTCCA
***
100316 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
100349 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
100382 A
1 A
100383 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:100426 original size:19 final size:18
Alignment explanation
Indices: 100402--100469 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
100392 CAGTAGCTAA
100402 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
100421 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
100436 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
100453 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
100470 TTGTTGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 4 0.09
19 25 0.58
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:100442 original size:13 final size:13
Alignment explanation
Indices: 100424--100448 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
100414 ACAATACTTA
100424 TGTATCGATACAT
1 TGTATCGATACAT
100437 TGTATCGATACA
1 TGTATCGATACA
100449 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:100446 original size:32 final size:32
Alignment explanation
Indices: 100405--100467 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
100395 TAGCTAATTA
*
100405 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
100437 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
100468 AATTGTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:100549 original size:21 final size:21
Alignment explanation
Indices: 100525--100581 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
100515 CATTTGTAGG
100525 ATGTATCGATACATTCCACAA
1 ATGTATCGATACATTCCACAA
*
100546 ATGTATCGATACATTCTACAA
1 ATGTATCGATACATTCCACAA
100567 ATGTATCGATACATT
1 ATGTATCGATACATT
100582 TAAATTTTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (21 bp):
ATGTATCGATACATTCCACAA
Found at i:102165 original size:55 final size:55
Alignment explanation
Indices: 102081--103094 Score: 1523
Period size: 55 Copynumber: 18.4 Consensus size: 55
102071 ATAAATTGTA
* * * * ** *
102081 TCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCATGTGGGCTTTGAA-AGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
* *
102136 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCCACTTGTGTGGGCTTTGAA-AAGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
* *
102191 TCCTGCTCTTTGGGGAATGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
**
102246 TCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
* *
102301 TCCTGTTCTTTGAGGACTAGAAA-ATGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
*
102356 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
* *
102411 TCCTGCTCTTTGGGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
*
102466 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
* *
102521 TCCTGCTCTTTGGGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
*
102576 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
*
102631 TCCTGCTCTTTGAGGGCTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
*
102686 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
* * *
102741 TCCTGCTCGTTGAGGACTGGAAA-ATGCCACCAACTTATGTGGGCTTTGAA-AGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
*
102796 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
102851 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
*
102906 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
* *
102961 TCCTGCTCGTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
*
103016 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTAAGAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
*
103071 TCCTGCTCTTTGGGGACTGAAAGG
1 TCCTGCTCTTTGAGGACTGAAAGG
103095 CGGAAGGAGA
Statistics
Matches: 897, Mismatches: 45, Indels: 34
0.92 0.05 0.03
Matches are distributed among these distances:
54 26 0.03
55 848 0.95
56 23 0.03
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
Found at i:102871 original size:26 final size:26
Alignment explanation
Indices: 102842--102931 Score: 74
Period size: 26 Copynumber: 3.3 Consensus size: 26
102832 GTGTGGGCTT
102842 TGAAAGGTGTCCTGCTCTTTGAGGAC
1 TGAAAGGTGTCCTGCTCTTTGAGGAC
** * * *
102868 TGAAAGGTG-CCACCAACTTGTGTGGGC
1 TGAAAGGTGTCCTGC-TCTT-TGAGGAC
* *
102895 TTTAAGAGGTGTCCTGCTCTTTGGGGAC
1 -TGAA-AGGTGTCCTGCTCTTTGAGGAC
102923 TGAAAGGTG
1 TGAAAGGTG
102932 CCACCAACTT
Statistics
Matches: 47, Mismatches: 12, Indels: 10
0.68 0.17 0.14
Matches are distributed among these distances:
25 3 0.06
26 17 0.36
27 8 0.17
28 8 0.17
29 8 0.17
30 3 0.06
ACGTcount: A:0.20, C:0.18, G:0.33, T:0.29
Consensus pattern (26 bp):
TGAAAGGTGTCCTGCTCTTTGAGGAC
Found at i:102960 original size:29 final size:29
Alignment explanation
Indices: 102872--102960 Score: 89
Period size: 29 Copynumber: 3.2 Consensus size: 29
102862 GAGGACTGAA
102872 AGGTGCCACCAACTTGTGTGGGCTTTAAG
1 AGGTGCCACCAACTTGTGTGGGCTTTAAG
** * *
102901 AGGTGTCCTGC-TCTT-TG-GGGAC-TGAA-
1 AGGTG-CCACCAACTTGTGTGGG-CTTTAAG
102927 AGGTGCCACCAACTTGTGTGGGCTTTAAG
1 AGGTGCCACCAACTTGTGTGGGCTTTAAG
102956 AGGTG
1 AGGTG
102961 TCCTGCTCGT
Statistics
Matches: 45, Mismatches: 8, Indels: 14
0.67 0.12 0.21
Matches are distributed among these distances:
25 3 0.07
26 8 0.18
27 9 0.20
28 9 0.20
29 13 0.29
30 3 0.07
ACGTcount: A:0.19, C:0.19, G:0.34, T:0.28
Consensus pattern (29 bp):
AGGTGCCACCAACTTGTGTGGGCTTTAAG
Found at i:116617 original size:79 final size:79
Alignment explanation
Indices: 116517--116718 Score: 228
Period size: 79 Copynumber: 2.6 Consensus size: 79
116507 AATAACAGGG
* * * * *
116517 TTGGAGTGTTCCCTT-GAAAATAACGGGGCTGGAGTATCCCCGGTTGTGAGAAATCGATGA-TTA
1 TTGGAGT-ATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAAT-ATTTA
*
116580 GAAAAAAAAATCGGGA
64 GAAAAAAAAACCGGGA
* * *
116596 TTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATATTTTGG
1 TTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTAGA
* * * *
116661 GAATAAAGCCGGGG
66 AAAAAAAACCGGGA
* * *
116675 TTGGAGTATCCCCTCGGAAGTAACGGGGTTGGAGTATCCCCGAT
1 TTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCGAT
116719 GAAATAACGA
Statistics
Matches: 104, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
78 7 0.07
79 97 0.93
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (79 bp):
TTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTAGA
AAAAAAAACCGGGA
Found at i:116710 original size:28 final size:28
Alignment explanation
Indices: 116670--116741 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
116660 GGAATAAAGC
** *
116670 CGGGGTTGGAGTATCCCCTCGGAAGTAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
116698 CGGGGTTGGAGTATCCCCGATGAAATAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
116726 CGAGGTTGGAGTATCC
1 CGGGGTTGGAGTATCC
116742 TCGATTGTGA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.24, C:0.19, G:0.35, T:0.22
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGAGGAAATAA
Found at i:116799 original size:52 final size:52
Alignment explanation
Indices: 116730--116854 Score: 137
Period size: 52 Copynumber: 2.4 Consensus size: 52
116720 AAATAACGAG
* * * *
116730 GTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATC-GGA
1 GTTGGAGTATCCCCGATTGTGAAAAATTGG-AGTTTTGAAAATAAAACCAGGA
** * *
116782 GTTGGAGTATCCCCGATTAAAGGAAAATTGGCGTTTTGAAAATAAAACCAGGA
1 GTTGGAGTATCCCCGATT-GTGAAAAATTGGAGTTTTGAAAATAAAACCAGGA
*
116835 -TTGGAATATCCCCGATTGTG
1 GTTGGAGTATCCCCGATTGTG
116855 GAGAATTGAG
Statistics
Matches: 60, Mismatches: 11, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
51 1 0.02
52 47 0.78
53 12 0.20
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (52 bp):
GTTGGAGTATCCCCGATTGTGAAAAATTGGAGTTTTGAAAATAAAACCAGGA
Found at i:119232 original size:13 final size:13
Alignment explanation
Indices: 119214--119239 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
119204 ACAAAGATCC
119214 ATGTATCGATACA
1 ATGTATCGATACA
119227 ATGTATCGATACA
1 ATGTATCGATACA
119240 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:119235 original size:33 final size:33
Alignment explanation
Indices: 119193--119259 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
119183 AAAATTTCCA
***
119193 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
119226 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
119259 A
1 A
119260 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:119303 original size:19 final size:18
Alignment explanation
Indices: 119279--119346 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
119269 CAGTAGCTAA
119279 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
119298 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
119313 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
119330 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
119347 TTGTTGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 4 0.09
19 25 0.58
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:119319 original size:13 final size:13
Alignment explanation
Indices: 119301--119325 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
119291 ACAATACTTA
119301 TGTATCGATACAT
1 TGTATCGATACAT
119314 TGTATCGATACA
1 TGTATCGATACA
119326 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:119323 original size:32 final size:32
Alignment explanation
Indices: 119282--119344 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
119272 TAGCTAATTA
*
119282 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
119314 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
119345 AATTGTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:119426 original size:21 final size:21
Alignment explanation
Indices: 119402--119458 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
119392 CATTTGTAGG
119402 ATGTATCGATACATTCCACAA
1 ATGTATCGATACATTCCACAA
*
119423 ATGTATCGATACATTCTACAA
1 ATGTATCGATACATTCCACAA
119444 ATGTATCGATACATT
1 ATGTATCGATACATT
119459 TAAATTTTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (21 bp):
ATGTATCGATACATTCCACAA
Found at i:119485 original size:13 final size:13
Alignment explanation
Indices: 119467--119492 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
119457 TTTAAATTTT
119467 TTTTTTTTTTCAA
1 TTTTTTTTTTCAA
119480 TTTTTTTTTTCAA
1 TTTTTTTTTTCAA
119493 ACACTTTATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.08, G:0.00, T:0.77
Consensus pattern (13 bp):
TTTTTTTTTTCAA
Found at i:127391 original size:13 final size:13
Alignment explanation
Indices: 127373--127400 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
127363 ATACAAAGGT
127373 CAATGTATCGATA
1 CAATGTATCGATA
127386 CAATGTATCGATA
1 CAATGTATCGATA
127399 CA
1 CA
127401 TTTGAGTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:127477 original size:19 final size:18
Alignment explanation
Indices: 127453--127515 Score: 73
Period size: 19 Copynumber: 3.7 Consensus size: 18
127443 AGCGATACAT
127453 TGTATCGATACAAAACTTA
1 TGTATCGATAC-AAACTTA
127472 TGTATCGATAC--A---A
1 TGTATCGATACAAACTTA
127485 TGTATCGATACAACACTTA
1 TGTATCGATACAA-ACTTA
127504 TGTATCGATACA
1 TGTATCGATACA
127516 GTTACAGTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 12 0.32
16 2 0.05
19 24 0.63
ACGTcount: A:0.38, C:0.17, G:0.13, T:0.32
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:127489 original size:32 final size:32
Alignment explanation
Indices: 127445--127515 Score: 124
Period size: 32 Copynumber: 2.2 Consensus size: 32
127435 AGCTTCGTAG
*
127445 CGATACATTGTATCGATACAAAACTTATGTAT
1 CGATACAATGTATCGATACAAAACTTATGTAT
*
127477 CGATACAATGTATCGATACAACACTTATGTAT
1 CGATACAATGTATCGATACAAAACTTATGTAT
127509 CGATACA
1 CGATACA
127516 GTTACAGTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.38, C:0.18, G:0.13, T:0.31
Consensus pattern (32 bp):
CGATACAATGTATCGATACAAAACTTATGTAT
Found at i:127497 original size:13 final size:13
Alignment explanation
Indices: 127471--127497 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
127461 TACAAAACTT
127471 ATGTATCGATACA
1 ATGTATCGATACA
127484 ATGTATCGATACA
1 ATGTATCGATACA
127497 A
1 A
127498 CACTTATGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:128360 original size:52 final size:51
Alignment explanation
Indices: 128196--128487 Score: 326
Period size: 52 Copynumber: 5.7 Consensus size: 51
128186 TGCCAATGCA
** *
128196 CTGATTCAAGGCCAACGACATTGGGTTTTAAAGATGACGAAGGCGCCAATATG
1 CTGATTCAAGGCCAACGACATT-GGACTTAAAGATGAC-AAGGTGCCAATATG
* * * *
128249 CTGATTCAAGGCCAACAATACT-GATCTTTAAAGATG--AAGGTGCCAATGTG
1 CTGATTCAAGGCCAACGACATTGGA-C-TTAAAGATGACAAGGTGCCAATATG
*
128299 CTGATTCAAGGCCAACGACATTGGACTTAAAGATGACAAAGGCGCCAATATG
1 CTGATTCAAGGCCAACGACATTGGACTTAAAGATGAC-AAGGTGCCAATATG
* *
128351 CTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACGAAGGTGCCAATATG
1 CTGATTCAAGGCCAACGACATTGGACTTAAAGATGAC-AAGGTGCCAATATG
* * * * *
128403 CTGATTTAATGG-CAGCGATATTGGACCTAAAGATG--AAGGTGCCAATGTG
1 CTGATTCAA-GGCCAACGACATTGGACTTAAAGATGACAAGGTGCCAATATG
* *
128452 CTAATTCAAGGCCAACGACATTGGTCTTAAAGATGA
1 CTGATTCAAGGCCAACGACATTGGACTTAAAGATGA
128488 TGAGGATGAG
Statistics
Matches: 205, Mismatches: 25, Indels: 21
0.82 0.10 0.08
Matches are distributed among these distances:
48 2 0.01
49 48 0.23
50 32 0.16
51 3 0.01
52 90 0.44
53 30 0.15
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.24
Consensus pattern (51 bp):
CTGATTCAAGGCCAACGACATTGGACTTAAAGATGACAAGGTGCCAATATG
Found at i:128363 original size:102 final size:101
Alignment explanation
Indices: 128186--128485 Score: 322
Period size: 101 Copynumber: 2.9 Consensus size: 101
128176 ATGAGAAGAA
** **
128186 TGCCAATGCACTGATTCAAGGCCAACGACATTGGGTTTTAAAGATGACGAAGGCGCCAATATGCT
1 TGCCAATGTGCTGATTCAAGGCCAACGACATT-GGACTTAAAGATGAC-AAGGCGCCAATATGCT
128251 GATTCAAGGCCAACAATACT-GATCTTTAAAGAT-GAAGG
64 GATTCAAGGCCAACAATACTGGA-C-TTAAAGATAGAAGG
128289 TGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGATGACAAAGGCGCCAATATGCTG
1 TGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGATGAC-AAGGCGCCAATATGCTG
* * *
128354 ATTCAAGGCCAGCGATATTGGACTTAAAGATGACGAAGG
65 ATTCAAGGCCAACAATACTGGACTTAAAGAT-A-GAAGG
* * * * * * * *
128393 TGCCAATATGCTGATTTAATGG-CAGCGATATTGGACCTAAAGATG--AAGGTGCCAATGTGCTA
1 TGCCAATGTGCTGATTCAA-GGCCAACGACATTGGACTTAAAGATGACAAGGCGCCAATATGCTG
* * * *
128455 ATTCAAGGCCAACGACATTGGTCTTAAAGAT
65 ATTCAAGGCCAACAATACTGGACTTAAAGAT
128486 GATGAGGATG
Statistics
Matches: 173, Mismatches: 19, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
101 50 0.29
102 47 0.27
103 32 0.18
104 42 0.24
105 2 0.01
ACGTcount: A:0.33, C:0.19, G:0.24, T:0.24
Consensus pattern (101 bp):
TGCCAATGTGCTGATTCAAGGCCAACGACATTGGACTTAAAGATGACAAGGCGCCAATATGCTGA
TTCAAGGCCAACAATACTGGACTTAAAGATAGAAGG
Found at i:128467 original size:153 final size:155
Alignment explanation
Indices: 128196--128487 Score: 430
Period size: 153 Copynumber: 1.9 Consensus size: 155
128186 TGCCAATGCA
**
128196 CTGATTCAAGGCCAACGACATTGGGTTTTAAAGATGACGAAGGCGCCAATATGCTGATTCAAGGC
1 CTGATTCAAGGCCAACGACATTGGGACTTAAAGATGACGAAGGCGCCAATATGCTGATTCAAGGC
* *
128261 CAACAATACTGATCTTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAACGACATTGGACT
66 CAACAATACTGATCTCTAAAGATGAAGGTGCCAATGTGCTAATTCAAGGCCAACGACATTGGACT
128326 TAAAGATGACAAAGGCGCCAATATG
131 TAAAGATGACAAAGGCGCCAATATG
* * * *
128351 CTGATTCAAGGCCAGCGATATT-GGACTTAAAGATGACGAAGGTGCCAATATGCTGATTTAATGG
1 CTGATTCAAGGCCAACGACATTGGGACTTAAAGATGACGAAGGCGCCAATATGCTGATTCAA-GG
* * * *
128415 -CAGCGATATTGGA-C-CTAAAGATGAAGGTGCCAATGTGCTAATTCAAGGCCAACGACATTGGT
65 CCAACAATACT-GATCTCTAAAGATGAAGGTGCCAATGTGCTAATTCAAGGCCAACGACATTGGA
128477 CTTAAAGATGA
129 CTTAAAGATGA
128488 TGAGGATGAG
Statistics
Matches: 123, Mismatches: 12, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
153 56 0.46
154 43 0.35
155 24 0.20
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.24
Consensus pattern (155 bp):
CTGATTCAAGGCCAACGACATTGGGACTTAAAGATGACGAAGGCGCCAATATGCTGATTCAAGGC
CAACAATACTGATCTCTAAAGATGAAGGTGCCAATGTGCTAATTCAAGGCCAACGACATTGGACT
TAAAGATGACAAAGGCGCCAATATG
Found at i:128584 original size:49 final size:50
Alignment explanation
Indices: 128525--128657 Score: 173
Period size: 49 Copynumber: 2.7 Consensus size: 50
128515 TAATATGTTA
* *
128525 ATTCAGGGCCAATGATATTAGG-CTTAAAGATGAAGG-TGACAATGTGCTG
1 ATTCAAGGCCAATGACATT-GGTCTTAAAGATGAAGGATGACAATGTGCTG
* * *
128574 ATTTAAGGCCAACGACATTGGTCTTAAAGATG-AGGATGCCAATGTGCTG
1 ATTCAAGGCCAATGACATTGGTCTTAAAGATGAAGGATGACAATGTGCTG
* *
128623 ATTCAAAGCCAGTGACATTGGTCTTAAAGATGAAG
1 ATTCAAGGCCAATGACATTGGTCTTAAAGATGAAG
128658 AAGGTGCCAA
Statistics
Matches: 72, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
48 5 0.07
49 65 0.90
50 2 0.03
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.26
Consensus pattern (50 bp):
ATTCAAGGCCAATGACATTGGTCTTAAAGATGAAGGATGACAATGTGCTG
Found at i:128773 original size:30 final size:30
Alignment explanation
Indices: 128734--128823 Score: 114
Period size: 30 Copynumber: 3.1 Consensus size: 30
128724 TGGGCTTTTG
*
128734 AAGGTTGCCACTGACTTGTGGGCTTTGGAA
1 AAGGTTGCCACTGACTTATGGGCTTTGGAA
* *
128764 AAGAG-TGCCATTGACTTATGGGCTTTTG--
1 AAG-GTTGCCACTGACTTATGGGCTTTGGAA
*
128792 AAGGTTGCCACTGACTTATAGGCTTTGGAA
1 AAGGTTGCCACTGACTTATGGGCTTTGGAA
128822 AA
1 AA
128824 TGTGAGGAAT
Statistics
Matches: 50, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
27 1 0.02
28 23 0.46
30 25 0.50
31 1 0.02
ACGTcount: A:0.24, C:0.16, G:0.29, T:0.31
Consensus pattern (30 bp):
AAGGTTGCCACTGACTTATGGGCTTTGGAA
Found at i:128809 original size:28 final size:28
Alignment explanation
Indices: 128724--128817 Score: 118
Period size: 28 Copynumber: 3.3 Consensus size: 28
128714 CCAACTTGTG
*
128724 TGGGCTTTTGAAGGTTGCCACTGACTTG
1 TGGGCTTTTGAAGGTTGCCACTGACTTA
* *
128752 TGGGCTTTGGAAAAGAG-TGCCATTGACTTA
1 TGGGCTTTTG--AAG-GTTGCCACTGACTTA
128782 TGGGCTTTTGAAGGTTGCCACTGACTTA
1 TGGGCTTTTGAAGGTTGCCACTGACTTA
*
128810 TAGGCTTT
1 TGGGCTTT
128818 GGAAAATGTG
Statistics
Matches: 56, Mismatches: 6, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
27 1 0.02
28 31 0.55
30 23 0.41
31 1 0.02
ACGTcount: A:0.19, C:0.16, G:0.30, T:0.35
Consensus pattern (28 bp):
TGGGCTTTTGAAGGTTGCCACTGACTTA
Found at i:130274 original size:4 final size:4
Alignment explanation
Indices: 130261--130302 Score: 50
Period size: 4 Copynumber: 10.8 Consensus size: 4
130251 CCGGACCCTT
* * *
130261 TTTG -TTG TTTG TTTG TTTG TTTT TTTG TTTT TTTT TTTG TTT
1 TTTG TTTG TTTG TTTG TTTG TTTG TTTG TTTG TTTG TTTG TTT
130303 TTTTTGTCTC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
3 3 0.09
4 30 0.91
ACGTcount: A:0.00, C:0.00, G:0.17, T:0.83
Consensus pattern (4 bp):
TTTG
Found at i:130282 original size:12 final size:12
Alignment explanation
Indices: 130259--130307 Score: 66
Period size: 12 Copynumber: 4.2 Consensus size: 12
130249 ATCCGGACCC
130259 TTTTTG-TTGTT
1 TTTTTGTTTGTT
*
130270 TGTTTGTTTGTT
1 TTTTTGTTTGTT
*
130282 TTTTTGTTTTTT
1 TTTTTGTTTGTT
130294 TTTTTGTTT-TT
1 TTTTTGTTTGTT
130305 TTT
1 TTT
130308 GTCTCTTTCT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
11 10 0.29
12 24 0.71
ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86
Consensus pattern (12 bp):
TTTTTGTTTGTT
Found at i:130303 original size:8 final size:8
Alignment explanation
Indices: 130259--130333 Score: 59
Period size: 8 Copynumber: 9.5 Consensus size: 8
130249 ATCCGGACCC
130259 TTTTTG-T
1 TTTTTGTT
*
130266 TGTTTGTT
1 TTTTTGTT
*
130274 TGTTTGTT
1 TTTTTGTT
130282 TTTTTGTT
1 TTTTTGTT
130290 TTTTT-TT
1 TTTTTGTT
130297 TTGTTT-TT
1 TT-TTTGTT
*
130305 TTTGTCTCTT
1 TTT-T-TGTT
*
130315 TCTTTGTT
1 TTTTTGTT
130323 TTTTT-TT
1 TTTTTGTT
130330 TTTT
1 TTTT
130334 GCGGAGGACG
Statistics
Matches: 58, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
7 16 0.28
8 36 0.62
9 2 0.03
10 4 0.07
ACGTcount: A:0.00, C:0.04, G:0.12, T:0.84
Consensus pattern (8 bp):
TTTTTGTT
Found at i:130326 original size:21 final size:21
Alignment explanation
Indices: 130276--130328 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
130266 TGTTTGTTTG
* * *
130276 TTTG-TTTTTTTGTTTTTTTT
1 TTTGTTTTTTTTGTCTCTTTC
130296 TTTGTTTTTTTTGTCTCTTTC
1 TTTGTTTTTTTTGTCTCTTTC
130317 TTTGTTTTTTTT
1 TTTGTTTTTTTT
130329 TTTTTGCGGA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 4 0.14
21 25 0.86
ACGTcount: A:0.00, C:0.06, G:0.09, T:0.85
Consensus pattern (21 bp):
TTTGTTTTTTTTGTCTCTTTC
Found at i:135423 original size:28 final size:28
Alignment explanation
Indices: 135361--135442 Score: 89
Period size: 28 Copynumber: 3.0 Consensus size: 28
135351 GTTTTGGAGA
*
135361 AAATAACGGGGTTGGAGTGTTCCCTCG--G
1 AAATAACGGGGTTGGAGT-ATCCC-CGATG
*
135389 AAGTAACGGGGTTGGAGTATCCCCGATG
1 AAATAACGGGGTTGGAGTATCCCCGATG
* *
135417 AAATAACGAGG-TGGAGTATCCTCGAT
1 AAATAACGGGGTTGGAGTATCCCCGAT
135443 TGTGAAAAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
26 2 0.04
27 18 0.38
28 27 0.57
ACGTcount: A:0.27, C:0.17, G:0.33, T:0.23
Consensus pattern (28 bp):
AAATAACGGGGTTGGAGTATCCCCGATG
Found at i:135486 original size:52 final size:51
Alignment explanation
Indices: 135428--135596 Score: 212
Period size: 52 Copynumber: 3.2 Consensus size: 51
135418 AATAACGAGG
* *
135428 TGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGAGT
1 TGGAGTATCCCCGATTGTGAAAAATTGGTA-TTTTGGAAATAAAATCGGGGT
** * * *
135480 TGGAGTATCCCCGATTAAAGAAAAAATTGGTGTTTTGAAAATAAAACCGGGGT
1 TGGAGTATCCCCGATT-GTG-AAAAATTGGTATTTTGGAAATAAAATCGGGGT
** *
135533 TGGAGTATCCCCGATTGTGGAAAAATCAGTATTTTGGAAATAAAGTCGGGGT
1 TGGAGTATCCCCGATTGT-GAAAAATTGGTATTTTGGAAATAAAATCGGGGT
135585 TGGAGTATCCCC
1 TGGAGTATCCCC
135597 TCAGAAATAA
Statistics
Matches: 99, Mismatches: 15, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
52 53 0.54
53 36 0.36
54 10 0.10
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.30
Consensus pattern (51 bp):
TGGAGTATCCCCGATTGTGAAAAATTGGTATTTTGGAAATAAAATCGGGGT
Found at i:135670 original size:54 final size:50
Alignment explanation
Indices: 135611--135736 Score: 153
Period size: 51 Copynumber: 2.4 Consensus size: 50
135601 AAATAACGGG
* * *
135611 GTTGGAGTATCCCCGATTGTGAAAATTTGGTGTTTTTTTAAAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAAAA-TTAGTG---TCTTAAAAATAAAATCAGA
*
135665 GTTGGAGTATCCCCGATTATAGAAAATTAGTGTCTTAAAAATAAAATCAGA
1 GTTGGAGTATCCCCGATTGT-GAAAATTAGTGTCTTAAAAATAAAATCAGA
* *
135716 GTTGAAATATCCCCGATTGTG
1 GTTGGAGTATCCCCGATTGTG
135737 GAGAATTGAG
Statistics
Matches: 64, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
50 1 0.02
51 34 0.53
54 24 0.38
55 5 0.08
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (50 bp):
GTTGGAGTATCCCCGATTGTGAAAATTAGTGTCTTAAAAATAAAATCAGA
Found at i:135727 original size:133 final size:133
Alignment explanation
Indices: 135478--135729 Score: 294
Period size: 133 Copynumber: 1.9 Consensus size: 133
135468 TAAAATCGGA
* *
135478 GTTGGAGTATCCCCGATTAAAGAAAAAATTGGTGTTTTGAAAATAAAACCGGGGTTGGAGTATCC
1 GTTGGAGTATCCCCGATTAAAGAAAAAATTGGTGTTTTAAAAATAAAACCGGAGTTGGAGTATCC
* * * ** * * * * *
135543 CCGATTGTGGAAAAATCAGTATTTTGGAAATAAAGTCGGGGTTGGAGTATCCCCTCAGAAATAAC
66 CCGATTATAGAAAAATCAGTATCTTAAAAATAAAATCAGAGTTGAAATATCCCCTCAGAAATAAC
135608 GGG
131 GGG
** * *
135611 GTTGGAGTATCCCCGATT-GTG-AAAATTTGGTGTTTTTTTAAAAATAAAATCGGAGTTGGAGTA
1 GTTGGAGTATCCCCGATTAAAGAAAAAATTGGTG---TTTTAAAAATAAAACCGGAGTTGGAGTA
* *
135674 TCCCCGATTATAG-AAAATTAGTGTCTTAAAAATAAAATCAGAGTTGAAATATCCCC
63 TCCCCGATTATAGAAAAATCAGTATCTTAAAAATAAAATCAGAGTTGAAATATCCCC
135730 GATTGTGGAG
Statistics
Matches: 98, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
131 10 0.10
132 1 0.01
133 51 0.52
134 36 0.37
ACGTcount: A:0.34, C:0.13, G:0.23, T:0.29
Consensus pattern (133 bp):
GTTGGAGTATCCCCGATTAAAGAAAAAATTGGTGTTTTAAAAATAAAACCGGAGTTGGAGTATCC
CCGATTATAGAAAAATCAGTATCTTAAAAATAAAATCAGAGTTGAAATATCCCCTCAGAAATAAC
GGG
Found at i:135729 original size:185 final size:183
Alignment explanation
Indices: 135395--135738 Score: 485
Period size: 185 Copynumber: 1.9 Consensus size: 183
135385 TCGGAAGTAA
* *
135395 CGGGGTTGGAGTATCCCCGATGAAATAACGAGGTGGAGTATCCTCGATTGTGAAAAATTGGTATT
1 CGGGGTTGGAGTATCCCCCATGAAATAACGAGGTGGAGTATCCCCGATTGTGAAAAATTGGTATT
** * * *
135460 TTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTAAAGAAAAAATTGGTGTTTTGAAAATAAA
66 TTTAAAAATAAAATCGGAGTTGGAGTATCCCCGATTAAAG-AAAAATTAGTGTCTTAAAAATAAA
* * * *
135525 ACCGGGGTTGGAGTATCCCCGATTGTGGAAAAATCAGTATTTTGGAAATAAAGT
130 ACCAGAGTTGAAATATCCCCGATTGTGGAAAAATCAGTATTTTGGAAATAAAGT
* *
135579 CGGGGTTGGAGTATCCCCTCA-GAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAATTTGGTG
1 CGGGGTTGGAGTATCCCC-CATGAAATAACGAGG-TGGAGTATCCCCGATTGTGAAAAATT-G-G
* *
135643 TTTTTTTAAAAATAAAATCGGAGTTGGAGTATCCCCGATTATAG-AAAATTAGTGTCTTAAAAAT
62 TATTTTTAAAAATAAAATCGGAGTTGGAGTATCCCCGATTAAAGAAAAATTAGTGTCTTAAAAAT
*
135707 AAAATCAGAGTTGAAATATCCCCGATTGTGGA
127 AAAACCAGAGTTGAAATATCCCCGATTGTGGA
135739 GAATTGAGAA
Statistics
Matches: 140, Mismatches: 16, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
184 29 0.21
185 69 0.49
186 1 0.01
187 41 0.29
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.29
Consensus pattern (183 bp):
CGGGGTTGGAGTATCCCCCATGAAATAACGAGGTGGAGTATCCCCGATTGTGAAAAATTGGTATT
TTTAAAAATAAAATCGGAGTTGGAGTATCCCCGATTAAAGAAAAATTAGTGTCTTAAAAATAAAA
CCAGAGTTGAAATATCCCCGATTGTGGAAAAATCAGTATTTTGGAAATAAAGT
Found at i:138124 original size:13 final size:13
Alignment explanation
Indices: 138106--138131 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
138096 ACAAAGATGC
138106 ATGTATCGATACA
1 ATGTATCGATACA
138119 ATGTATCGATACA
1 ATGTATCGATACA
138132 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:138127 original size:33 final size:33
Alignment explanation
Indices: 138085--138151 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
138075 AAAATTTCCA
***
138085 AATGTATCGATACAAAGATGCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
138118 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
138151 A
1 A
138152 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.15, G:0.16, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:138249 original size:21 final size:21
Alignment explanation
Indices: 138223--138301 Score: 88
Period size: 21 Copynumber: 3.8 Consensus size: 21
138213 GTTGGGACCT
* *
138223 TGTATCGATACATTTGTAGAA
1 TGTATCGATACATTTGAAAAA
** *
138244 TGTATCGATACATTCCACAAA
1 TGTATCGATACATTTGAAAAA
*
138265 TGTATCGATACGTTCT-AAAAA
1 TGTATCGATACATT-TGAAAAA
138286 TGTATCGATACATTTG
1 TGTATCGATACATTTG
138302 GATAAATTTT
Statistics
Matches: 47, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
20 1 0.02
21 46 0.98
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.35
Consensus pattern (21 bp):
TGTATCGATACATTTGAAAAA
Found at i:138455 original size:42 final size:42
Alignment explanation
Indices: 138408--138501 Score: 109
Period size: 42 Copynumber: 2.2 Consensus size: 42
138398 CCATTTTCCA
* * *
138408 AGGACAAAGGAAAAAGGGAAATGAAA-TATGTCCTGCTCTCTG
1 AGGACAAAAGAAAAAGGAAAAT-AAAGTATATCCTGCTCTCTG
* * *
138450 AGGACAAAAGAAAGAGGAAAATAAAGTGTATCCTGCTCTTTG
1 AGGACAAAAGAAAAAGGAAAATAAAGTATATCCTGCTCTCTG
138492 AGGACTAAAA
1 AGGAC-AAAA
138502 AGTGCCACCA
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
41 3 0.07
42 37 0.84
43 4 0.09
ACGTcount: A:0.44, C:0.13, G:0.24, T:0.19
Consensus pattern (42 bp):
AGGACAAAAGAAAAAGGAAAATAAAGTATATCCTGCTCTCTG
Found at i:138921 original size:59 final size:59
Alignment explanation
Indices: 138480--139137 Score: 773
Period size: 55 Copynumber: 11.3 Consensus size: 59
138470 ATAAAGTGTA
* * *
138480 TCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGC-TT---CG-AAAGGCG
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
*
138535 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT--AAG---AGGTG
1 TCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* *
138590 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT----G-AAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* * *
138645 TCCTACTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT----G-AAAGGGG
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* * * *
138700 TCGTGCTCTTTGCGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGCG
* * *
138761 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCAAAA-GCA
1 TCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTT-AAAAG-AAAAGGCG
* *
138821 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGGGTGGGCTTTAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* * * * * *
138880 TCTTGCTCTTTGAGGATTGAAGGTGCCACTAACTTGTGTGGGCTTTAAGAGAAAAAGCG
1 TCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* * *
138939 TCCCGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTAAGAGAAAAAGCG
1 TCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
*
138998 TCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* * * *
139058 TCCTGCTCTTTGAGGATTGGAAAATGCCACCAACTTGTGGGGGCTTTTAAAAGGAAAAGGCA
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGC-TTTAAAA-GAAAAGGCG
139120 TCCTGCTCTTTGAGGACT
1 TCCTGCTCTTTGAGGACT
139138 AAAAAGCGGA
Statistics
Matches: 544, Mismatches: 41, Indels: 29
0.89 0.07 0.05
Matches are distributed among these distances:
53 1 0.00
54 7 0.01
55 179 0.33
56 6 0.01
57 1 0.00
58 4 0.01
59 130 0.24
60 157 0.29
61 34 0.06
62 25 0.05
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.26
Consensus pattern (59 bp):
TCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
Found at i:152600 original size:28 final size:27
Alignment explanation
Indices: 152539--152620 Score: 94
Period size: 28 Copynumber: 3.0 Consensus size: 27
152529 TTTTGGAGAT
*
152539 AATAACGGGGTTGGAGTGTTCCCTCGA-A
1 AATAACGGGGTTGGAGT-ATCCC-CGATA
*
152567 AGTAACGGGGTTGGAGTATCCCCGATGA
1 AATAACGGGGTTGGAGTATCCCCGAT-A
* *
152595 AATAACGAGGTTGGAGTATCCTCGAT
1 AATAACGGGGTTGGAGTATCCCCGAT
152621 TGTGAAAAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
26 3 0.06
27 4 0.09
28 40 0.85
ACGTcount: A:0.27, C:0.17, G:0.32, T:0.24
Consensus pattern (27 bp):
AATAACGGGGTTGGAGTATCCCCGATA
Found at i:152664 original size:52 final size:51
Alignment explanation
Indices: 152603--152774 Score: 211
Period size: 52 Copynumber: 3.3 Consensus size: 51
152593 GAAATAACGA
*
152603 GGTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTGTGAAAAATTGGTA-TTTTGGAAATAAAATCGG
* * * *
152655 AGTTGGAGTATCCCCGATTAAAG-GAAAAATTGGTGTTTTGAAAATAAAACCGG
1 GGTTGGAGTATCCCCGATT---GTGAAAAATTGGTATTTTGGAAATAAAATCGG
** * *
152708 GGTTGGAGTATCCCCGATTGTGGAAAAATCAGTATTTTGGAAATAAAGTTGG
1 GGTTGGAGTATCCCCGATTGT-GAAAAATTGGTATTTTGGAAATAAAATCGG
152760 GGTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
152775 TCGAAAATAA
Statistics
Matches: 102, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
50 1 0.01
52 55 0.54
53 34 0.33
54 11 0.11
55 1 0.01
ACGTcount: A:0.31, C:0.11, G:0.27, T:0.30
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTGGAAATAAAATCGG
Found at i:152726 original size:105 final size:102
Alignment explanation
Indices: 152598--152941 Score: 293
Period size: 105 Copynumber: 3.3 Consensus size: 102
152588 CCGATGAAAT
* *
152598 AACGAGGTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGAGTTGGAG
1 AACGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGAGTTGGAG
152663 TATCCCCGATTAAAGGAAAAATTGGTGTTTTGAAAATAA
66 TATCCCCGATTAAA--AAAAATTGGTGTTTTGAAAATAA
** * * *
152702 AACCGGGGTTGGAGTATCCCCGATTGTGGAAAAATCAGTA-TTTTGGAAATAAAGTTGGGGTTGG
1 AA-CGGGGTTGGAGTATCCCCGATTGT-GAAAAATTGGTATTTTTGGAAATAAAATCGGAGTTGG
** * * * * *
152766 AGTATCCCC--TCGAAAATAA-TGG-GGTTCGAGTATCCCCGATGATT
64 AGTATCCCCGATTAAAAAAAATTGGTGTTTTGA--A-----AAT-A-A
* * * *
152810 AACGGGGTTGGAGTATCCTCGATTGTGAAAATTTGGTGTTTTTTTGGAAATAAAATCGAAGTTGG
1 AACGGGGTTGGAGTATCCCCGATTGTGAAAAATT-G-GTATTTTTGGAAATAAAATCGGAGTTGG
* * *
152875 AGTATCCCCGATTATAAAAAATTAGTGTCTTGAAAATAA
64 AGTATCCCCGATTAAAAAAAATTGGTGTTTTGAAAATAA
* * *
152914 AATCGGAGTTGAAATATCCCCGATTGTG
1 AA-CGGGGTTGGAGTATCCCCGATTGTG
152942 GAGAATTGAG
Statistics
Matches: 184, Mismatches: 37, Indels: 37
0.71 0.14 0.14
Matches are distributed among these distances:
99 5 0.03
100 3 0.02
101 5 0.03
103 3 0.02
104 4 0.02
105 74 0.40
106 20 0.11
107 24 0.13
108 4 0.02
109 29 0.16
111 7 0.04
112 2 0.01
113 4 0.02
ACGTcount: A:0.32, C:0.12, G:0.26, T:0.31
Consensus pattern (102 bp):
AACGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGAGTTGGAG
TATCCCCGATTAAAAAAAATTGGTGTTTTGAAAATAA
Found at i:152788 original size:28 final size:28
Alignment explanation
Indices: 152757--152827 Score: 83
Period size: 27 Copynumber: 2.6 Consensus size: 28
152747 GAAATAAAGT
152757 TGGGGTTGGAGTATCCCCTCGA-AAATAA
1 TGGGGTTGGAGTATCCCC-CGATAAATAA
* * *
152785 TGGGGTTCGAGTAT-CCCCGATGATTAA
1 TGGGGTTGGAGTATCCCCCGATAAATAA
*
152812 CGGGGTTGGAGTATCC
1 TGGGGTTGGAGTATCC
152828 TCGATTGTGA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
26 3 0.08
27 19 0.53
28 14 0.39
ACGTcount: A:0.23, C:0.18, G:0.32, T:0.27
Consensus pattern (28 bp):
TGGGGTTGGAGTATCCCCCGATAAATAA
Found at i:152887 original size:54 final size:51
Alignment explanation
Indices: 152816--152941 Score: 135
Period size: 51 Copynumber: 2.4 Consensus size: 51
152806 GATTAACGGG
* * * * *
152816 GTTGGAGTATCCTCGATTGTGAAAATTTGGTGTTTTTTTGGAAATAAAATCGAA
1 GTTGGAGTATCCCCGATTGTGAAAAATTAGTG---TCTTGAAAATAAAATCGAA
* * *
152870 GTTGGAGTATCCCCGATTATAAAAAATTAGTGTCTTGAAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAAAAATTAGTGTCTTGAAAATAAAATCGAA
* *
152921 GTTGAAATATCCCCGATTGTG
1 GTTGGAGTATCCCCGATTGTG
152942 GAGAATTGAG
Statistics
Matches: 60, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
51 33 0.55
54 27 0.45
ACGTcount: A:0.33, C:0.11, G:0.22, T:0.34
Consensus pattern (51 bp):
GTTGGAGTATCCCCGATTGTGAAAAATTAGTGTCTTGAAAATAAAATCGAA
Found at i:152912 original size:212 final size:212
Alignment explanation
Indices: 152545--152943 Score: 604
Period size: 212 Copynumber: 1.9 Consensus size: 212
152535 AGATAATAAC
* * * *
152545 GGGGTTGGAGTGTTCCCTCGAAAGTAACGGGGTTGGAGTATCCCCGATGAAATAACGAGGTTGGA
1 GGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTCGAGTATCCCCGATGAAATAACGAGGTTGGA
*
152610 GTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTA
66 GTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGAAGTTGGAGTATCCCCGATTA
* * * * *
152675 AAGGAAAAATTGGTGTTTTGAAAATAAAACCGGGGTTGGAGTATCCCCGATTGTGGAAAAATCAG
131 AA-GAAAAATTAGTGTCTTGAAAATAAAACCGGAGTTGAAATATCCCCGATTGTGGAAAAATCAG
152740 TATTTTGGAAATAAAGTT
195 TATTTTGGAAATAAAGTT
* * *
152758 GGGGTTGGAGTATCCCCTCGAAAATAATGGGGTTCGAGTATCCCCGATG-ATTAACGGGGTTGGA
1 GGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTCGAGTATCCCCGATGAAATAACGAGGTTGGA
* *
152822 GTATCCTCGATTGTGAAAATTTGGTGTTTTTTTGGAAATAAAATCGAAGTTGGAGTATCCCCGAT
66 GTATCCTCGATTGTGAAAAATT-G-GTATTTTTGGAAATAAAATCGAAGTTGGAGTATCCCCGAT
* *
152887 TATA-AAAAATTAGTGTCTTGAAAATAAAATCGGAGTTGAAATATCCCCGATTGTGGA
129 TAAAGAAAAATTAGTGTCTTGAAAATAAAACCGGAGTTGAAATATCCCCGATTGTGGA
152944 GAATTGAGAA
Statistics
Matches: 167, Mismatches: 17, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
212 81 0.49
213 45 0.27
214 41 0.25
ACGTcount: A:0.31, C:0.13, G:0.27, T:0.30
Consensus pattern (212 bp):
GGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTCGAGTATCCCCGATGAAATAACGAGGTTGGA
GTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGAAGTTGGAGTATCCCCGATTA
AAGAAAAATTAGTGTCTTGAAAATAAAACCGGAGTTGAAATATCCCCGATTGTGGAAAAATCAGT
ATTTTGGAAATAAAGTT
Found at i:155306 original size:13 final size:13
Alignment explanation
Indices: 155288--155313 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
155278 ACAAAGATCC
155288 ATGTATCGATACA
1 ATGTATCGATACA
155301 ATGTATCGATACA
1 ATGTATCGATACA
155314 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:155309 original size:33 final size:33
Alignment explanation
Indices: 155267--155333 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
155257 AAAATTTCCA
***
155267 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
155300 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
155333 A
1 A
155334 TTTGCTTGGT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:155449 original size:13 final size:13
Alignment explanation
Indices: 155431--155456 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
155421 ACAAAGATCC
155431 ATGTATCGATACA
1 ATGTATCGATACA
155444 ATGTATCGATACA
1 ATGTATCGATACA
155457 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:155452 original size:33 final size:33
Alignment explanation
Indices: 155410--155476 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
155400 AAAATTTCCA
***
155410 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
155443 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
155476 A
1 A
155477 TTTGCTTGGT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:155457 original size:143 final size:143
Alignment explanation
Indices: 155199--155489 Score: 582
Period size: 143 Copynumber: 2.0 Consensus size: 143
155189 GTGGCTCGAA
155199 GTAGTCAAAAATGTCTGAATGTATCGATACATTGTAAAATGTATCGATACATCTGGGTAAAATTT
1 GTAGTCAAAAATGTCTGAATGTATCGATACATTGTAAAATGTATCGATACATCTGGGTAAAATTT
155264 CCAAATGTATCGATACAAAGATCCATGTATCGATACAATGTATCGATACACAGAAAAATGTATCG
66 CCAAATGTATCGATACAAAGATCCATGTATCGATACAATGTATCGATACACAGAAAAATGTATCG
155329 ATACATTTGCTTG
131 ATACATTTGCTTG
155342 GTAGTCAAAAATGTCTGAATGTATCGATACATTGTAAAATGTATCGATACATCTGGGTAAAATTT
1 GTAGTCAAAAATGTCTGAATGTATCGATACATTGTAAAATGTATCGATACATCTGGGTAAAATTT
155407 CCAAATGTATCGATACAAAGATCCATGTATCGATACAATGTATCGATACACAGAAAAATGTATCG
66 CCAAATGTATCGATACAAAGATCCATGTATCGATACAATGTATCGATACACAGAAAAATGTATCG
155472 ATACATTTGCTTG
131 ATACATTTGCTTG
155485 GTAGT
1 GTAGT
155490 AGCTAATTAT
Statistics
Matches: 148, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
143 148 1.00
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.31
Consensus pattern (143 bp):
GTAGTCAAAAATGTCTGAATGTATCGATACATTGTAAAATGTATCGATACATCTGGGTAAAATTT
CCAAATGTATCGATACAAAGATCCATGTATCGATACAATGTATCGATACACAGAAAAATGTATCG
ATACATTTGCTTG
Found at i:155520 original size:19 final size:18
Alignment explanation
Indices: 155496--155563 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
155486 TAGTAGCTAA
155496 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
155515 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
155530 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
155547 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
155564 TTGTTGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 4 0.09
19 25 0.58
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:155536 original size:13 final size:13
Alignment explanation
Indices: 155518--155542 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
155508 ACAATACTTA
155518 TGTATCGATACAT
1 TGTATCGATACAT
155531 TGTATCGATACA
1 TGTATCGATACA
155543 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:155540 original size:32 final size:32
Alignment explanation
Indices: 155499--155561 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
155489 TAGCTAATTA
*
155499 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
155531 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
155562 AATTGTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:155642 original size:21 final size:21
Alignment explanation
Indices: 155618--155675 Score: 107
Period size: 21 Copynumber: 2.8 Consensus size: 21
155608 ACATTTGTAG
155618 AATGTATCGATACATTCCACA
1 AATGTATCGATACATTCCACA
*
155639 AATGTATCGATACATTCTACA
1 AATGTATCGATACATTCCACA
155660 AATGTATCGATACATT
1 AATGTATCGATACATT
155676 TGGATAAATT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.33
Consensus pattern (21 bp):
AATGTATCGATACATTCCACA
Found at i:165740 original size:32 final size:32
Alignment explanation
Indices: 165694--165756 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
165684 CGTAGTGATA
165694 CATTGTATCAATACAAAACTTATGTATCGATG
1 CATTGTATCAATACAAAACTTATGTATCGATG
* *
165726 CATTGTATCGATACAACACTTATGTATCGAT
1 CATTGTATCAATACAAAACTTATGTATCGAT
165757 ACAGTTACAG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.35, C:0.17, G:0.13, T:0.35
Consensus pattern (32 bp):
CATTGTATCAATACAAAACTTATGTATCGATG
Found at i:171950 original size:20 final size:20
Alignment explanation
Indices: 171900--172028 Score: 123
Period size: 20 Copynumber: 6.8 Consensus size: 20
171890 TTGTTTGCTG
*
171900 CATCATTTCATAC-TTGCAT
1 CATCATTTCATGCTTTGCAT
171919 C--CATGTTACATGCTTTGCAT
1 CATCAT-TT-CATGCTTTGCAT
171939 CATCATTTCATGCTTT-CA-
1 CATCATTTCATGCTTTGCAT
* * *
171957 CAACCTTT-AAGCTTTGCAT
1 CATCATTTCATGCTTTGCAT
171976 CATCATTTCATGCTTT-CA-
1 CATCATTTCATGCTTTGCAT
*
171994 CAAC-TTTCATGCTTTGCAT
1 CATCATTTCATGCTTTGCAT
*
172013 CTTCATTTCATGCTTT
1 CATCATTTCATGCTTT
172029 CACAACTTTC
Statistics
Matches: 89, Mismatches: 10, Indels: 21
0.74 0.08 0.17
Matches are distributed among these distances:
17 20 0.22
18 15 0.17
19 17 0.19
20 32 0.36
21 2 0.02
22 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.09, T:0.43
Consensus pattern (20 bp):
CATCATTTCATGCTTTGCAT
Found at i:172040 original size:37 final size:37
Alignment explanation
Indices: 171927--172040 Score: 194
Period size: 37 Copynumber: 3.1 Consensus size: 37
171917 ATCCATGTTA
171927 CATGCTTTGCATCATCATTTCATGCTTTCACAACCTTT
1 CATGCTTTGCATCATCATTTCATGCTTTCACAA-CTTT
*
171965 -AAGCTTTGCATCATCATTTCATGCTTTCACAACTTT
1 CATGCTTTGCATCATCATTTCATGCTTTCACAACTTT
*
172001 CATGCTTTGCATCTTCATTTCATGCTTTCACAACTTT
1 CATGCTTTGCATCATCATTTCATGCTTTCACAACTTT
172038 CAT
1 CAT
172041 TCATTCATCA
Statistics
Matches: 72, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
36 4 0.06
37 68 0.94
ACGTcount: A:0.22, C:0.27, G:0.08, T:0.43
Consensus pattern (37 bp):
CATGCTTTGCATCATCATTTCATGCTTTCACAACTTT
Found at i:172087 original size:9 final size:8
Alignment explanation
Indices: 172050--172123 Score: 59
Period size: 8 Copynumber: 9.8 Consensus size: 8
172040 TTCATTCATC
*
172050 ATTTTTTT
1 ATTTTTTG
172058 A-TTTTTG
1 ATTTTTTG
*
172065 ATAATTTTG
1 AT-TTTTTG
172074 ATTTTTTG
1 ATTTTTTG
172082 ATTTTTTG
1 ATTTTTTG
172090 A---TTT-
1 ATTTTTTG
*
172094 ATTTTTTT
1 ATTTTTTG
*
172102 ATTTTTTA
1 ATTTTTTG
*
172110 ATTTCTTG
1 ATTTTTTG
172118 ATTTTT
1 ATTTTT
172124 AATTTTTTTT
Statistics
Matches: 53, Mismatches: 7, Indels: 12
0.74 0.10 0.17
Matches are distributed among these distances:
4 1 0.02
5 3 0.06
7 9 0.17
8 33 0.62
9 7 0.13
ACGTcount: A:0.18, C:0.01, G:0.07, T:0.74
Consensus pattern (8 bp):
ATTTTTTG
Done.