Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold412
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4645160
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
File 31 of 32
Found at i:4458750 original size:23 final size:23
Alignment explanation
Indices: 4458724--4458767 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
4458714 GAATATTATT
* *
4458724 ATTTTTAATTTTTTTGATTTTTA
1 ATTTTTAATTATTTTAATTTTTA
*
4458747 ATTTTTTATTATTTTAATTTT
1 ATTTTTAATTATTTTAATTTT
4458768 ATATATAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.75
Consensus pattern (23 bp):
ATTTTTAATTATTTTAATTTTTA
Found at i:4459339 original size:17 final size:19
Alignment explanation
Indices: 4459298--4459339 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
4459288 ACCCGGTCTT
*
4459298 TTTACTAAAAACCAATATT
1 TTTACTAAAAACCAATATC
*
4459317 TTTACTAAAGACCAA-A-C
1 TTTACTAAAAACCAATATC
4459334 TTTACT
1 TTTACT
4459340 TCTCTCAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 6 0.29
18 1 0.05
19 14 0.67
ACGTcount: A:0.43, C:0.19, G:0.02, T:0.36
Consensus pattern (19 bp):
TTTACTAAAAACCAATATC
Found at i:4463522 original size:28 final size:31
Alignment explanation
Indices: 4463490--4463562 Score: 89
Period size: 32 Copynumber: 2.4 Consensus size: 31
4463480 TGAAAATGAG
4463490 TTGTTTGAG-T-AAT-TGTATTGAGGGGAAA
1 TTGTTTGAGCTGAATGTGTATTGAGGGGAAA
**
4463518 TTGTTTGGAGCTGTGTGTGTATTGAGGGGAAA
1 TTGTTT-GAGCTGAATGTGTATTGAGGGGAAA
4463550 TTGTTTGGAGCTG
1 TTGTTT-GAGCTG
4463563 TGTGTGAGCT
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
28 6 0.15
29 3 0.08
30 1 0.03
31 1 0.03
32 28 0.72
ACGTcount: A:0.21, C:0.03, G:0.37, T:0.40
Consensus pattern (31 bp):
TTGTTTGAGCTGAATGTGTATTGAGGGGAAA
Found at i:4463541 original size:32 final size:32
Alignment explanation
Indices: 4463503--4463568 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
4463493 TTTGAGTAAT
4463503 TGTATTGAGGGGAAATTGTTTGGAGCTGTGTG
1 TGTATTGAGGGGAAATTGTTTGGAGCTGTGTG
4463535 TGTATTGAGGGGAAATTGTTTGGAGCTGTGTG
1 TGTATTGAGGGGAAATTGTTTGGAGCTGTGTG
4463567 TG
1 TG
4463569 AGCTAAGGAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.18, C:0.03, G:0.41, T:0.38
Consensus pattern (32 bp):
TGTATTGAGGGGAAATTGTTTGGAGCTGTGTG
Found at i:4463587 original size:32 final size:32
Alignment explanation
Indices: 4463514--4463587 Score: 96
Period size: 32 Copynumber: 2.3 Consensus size: 32
4463504 GTATTGAGGG
* * *
4463514 GAAATTGTTTGGAGCTGTGTGTGTATTGAGGG
1 GAAATTGTTTGGAGCTGTGTGTGTACTAAGGA
4463546 GAAATTGTTTGGAGCTGTGTGTG-AGCTAAGGA
1 GAAATTGTTTGGAGCTGTGTGTGTA-CTAAGGA
*
4463578 GAAAGTGTTT
1 GAAATTGTTT
4463588 TGAGGTGTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
31 1 0.03
32 36 0.97
ACGTcount: A:0.23, C:0.04, G:0.38, T:0.35
Consensus pattern (32 bp):
GAAATTGTTTGGAGCTGTGTGTGTACTAAGGA
Found at i:4464168 original size:13 final size:13
Alignment explanation
Indices: 4464150--4464177 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
4464140 ATACAAAGAT
4464150 CAATGTATCGATA
1 CAATGTATCGATA
4464163 CAATGTATCGATA
1 CAATGTATCGATA
4464176 CA
1 CA
4464178 TTTCCTTGGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:4468322 original size:16 final size:16
Alignment explanation
Indices: 4468298--4468332 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
4468288 TGAAAATGAA
4468298 TTTATTTATTATTTTAT
1 TTTATTTATTATTTT-T
4468315 TTTA-TTATTATTTTT
1 TTTATTTATTATTTTT
4468330 TTT
1 TTT
4468333 GAAAATTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 4 0.22
16 10 0.56
17 4 0.22
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (16 bp):
TTTATTTATTATTTTT
Found at i:4470600 original size:17 final size:17
Alignment explanation
Indices: 4470580--4470626 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
4470570 AAGTTTCATT
*
4470580 TGCATGAAAGTATGAAA
1 TGCATGAAAGCATGAAA
* *
4470597 TGCATGTATGCATGAAA
1 TGCATGAAAGCATGAAA
*
4470614 -GCATGAAAACATG
1 TGCATGAAAGCATG
4470627 GATGCATTTT
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
16 10 0.42
17 14 0.58
ACGTcount: A:0.43, C:0.11, G:0.23, T:0.23
Consensus pattern (17 bp):
TGCATGAAAGCATGAAA
Found at i:4470815 original size:233 final size:233
Alignment explanation
Indices: 4470403--4470861 Score: 752
Period size: 233 Copynumber: 2.0 Consensus size: 233
4470393 CTGTTTCATG
* * *
4470403 TGCATTTTTCTTTCTCTTCATTACTTGCTATTTGCTGCTATTTTTCTCTTCGATTCCTCGAGCTA
1 TGCAATTTTCTTTCTCTTCATTACTTGCTATGTACTGCTATTTTTCTCTTCGATTCCTCGAGCTA
*
4470468 TTGCTTTAATTGCTTCCACCATTGCTACCGTTTACCACAACCTTATTTCCATATGAATGCATGAA
66 TTGCTTTAATTGCTTCCACCATTGCTACCGTTTACCACAACCTTATTTCCATAGGAATGCATGAA
4470533 ATCAAATCAATGCAATGAAATGCATGAAATGTTTCTTAAGTTTCATTTGCATGAAAGTATGAAAT
131 ATCAAATCAATGCAATGAAATGCATGAAATGTTTCTTAAGTTTCATTTGCATGAAAGTATGAAAT
4470598 GCATGTATGCATGAAAGCATGAAAACATGGATGCATTT
196 GCATGTATGCATGAAAGCATGAAAACATGGATGCATTT
*
4470636 TGCAATTTTCTTTCTCTTC-TT-CTTTCTCATGTACTTGCTATGCTTTT-TCTTCGA-TCCTCGA
1 TGCAATTTTCTTTCTCTTCATTACTTGCT-ATGTAC-TGCTAT--TTTTCTCTTCGATTCCTCGA
*
4470697 GC-ATTGCTTTTAATTGCTTCCACCATTGCTACCGTTTACCATAA-CTTATTTTCCATAGGAATG
62 GCTATTGC-TTTAATTGCTTCCACCATTGCTACCGTTTACCACAACCTTA-TTTCCATAGGAATG
4470760 CATGAAATCAAATCAATGC-ATGAAAATGCATGAAATGTTTCTTAAGTTTCATTTGCATGAAAGT
125 CATGAAATCAAATCAATGCAATG-AAATGCATGAAATGTTTCTTAAGTTTCATTTGCATGAAAGT
4470824 ATGAAATGCATGTATGCATGAAAGCATGAAAACATGGA
189 ATGAAATGCATGTATGCATGAAAGCATGAAAACATGGA
4470862 ATGGTCTATG
Statistics
Matches: 213, Mismatches: 6, Indels: 14
0.91 0.03 0.06
Matches are distributed among these distances:
231 5 0.02
232 18 0.08
233 179 0.84
234 7 0.03
235 4 0.02
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.38
Consensus pattern (233 bp):
TGCAATTTTCTTTCTCTTCATTACTTGCTATGTACTGCTATTTTTCTCTTCGATTCCTCGAGCTA
TTGCTTTAATTGCTTCCACCATTGCTACCGTTTACCACAACCTTATTTCCATAGGAATGCATGAA
ATCAAATCAATGCAATGAAATGCATGAAATGTTTCTTAAGTTTCATTTGCATGAAAGTATGAAAT
GCATGTATGCATGAAAGCATGAAAACATGGATGCATTT
Found at i:4470833 original size:17 final size:17
Alignment explanation
Indices: 4470813--4470864 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 17
4470803 AAGTTTCATT
*
4470813 TGCATGAAAGTATGAAA
1 TGCATGAAAGCATGAAA
* *
4470830 TGCATGTATGCATGAAA
1 TGCATGAAAGCATGAAA
* *
4470847 -GCATGAAAACATGGAA
1 TGCATGAAAGCATGAAA
4470863 TG
1 TG
4470865 GTCTATGCCC
Statistics
Matches: 27, Mismatches: 7, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
16 12 0.44
17 15 0.56
ACGTcount: A:0.42, C:0.10, G:0.25, T:0.23
Consensus pattern (17 bp):
TGCATGAAAGCATGAAA
Found at i:4471060 original size:17 final size:16
Alignment explanation
Indices: 4471040--4471087 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 16
4471030 AATTGATCTT
4471040 TTTTTATTATTTTATTA
1 TTTTTA-TATTTTATTA
4471057 TTTTTGAT-TTTTACTTA
1 TTTTT-ATATTTTA-TTA
*
4471074 TTATTATATTTTAT
1 TTTTTATATTTTAT
4471088 ATTGAAGAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
16 8 0.30
17 18 0.67
18 1 0.04
ACGTcount: A:0.23, C:0.02, G:0.02, T:0.73
Consensus pattern (16 bp):
TTTTTATATTTTATTA
Found at i:4471740 original size:86 final size:85
Alignment explanation
Indices: 4471549--4471790 Score: 209
Period size: 86 Copynumber: 2.8 Consensus size: 85
4471539 ATTTTCCAAG
* ** * * * * * *
4471549 GTCAAAGCCAACGGGCAGACAAAAAGTTAGAAAAGTCTTTAGGGTCAAGGTCAACAGG-AAGACT
1 GTCAAAGCCAACAGGCAGACTGAAGGGTAGAAAAGTCTCTAGGGTCAAAGCCGACAGGCAA-ACT
*
4471613 TTAGATAAGGCGGTCTTCAGA
65 TTAGATAAGGCAGTCTTCAGA
*** * * ** *
4471634 GTCAAAGTTGATAGGTAGACTGTGGGGTAAGAAAAGTCTCTGGGGTCAAAGCCGACAGGCAAACT
1 GTCAAAGCCAACAGGCAGACTGAAGGGT-AGAAAAGTCTCTAGGGTCAAAGCCGACAGGCAAACT
*
4471699 TTAGATAAGGCAGTC-TCGAGG
65 TTAGATAAGGCAGTCTTC-AGA
* * * ** * *
4471720 GTCAAAGCCAACAGGCAGACTGAATGGTAGGAAAGTCTCCAATGTCAAAGCTGACAGGCAGACTT
1 GTCAAAGCCAACAGGCAGACTGAAGGGTAGAAAAGTCTCTAGGGTCAAAGCCGACAGGCAAACTT
4471785 TAGATA
66 TAGATA
4471791 GGTAGTGTAG
Statistics
Matches: 120, Mismatches: 34, Indels: 6
0.75 0.21 0.04
Matches are distributed among these distances:
85 54 0.45
86 64 0.53
87 2 0.02
ACGTcount: A:0.35, C:0.17, G:0.29, T:0.19
Consensus pattern (85 bp):
GTCAAAGCCAACAGGCAGACTGAAGGGTAGAAAAGTCTCTAGGGTCAAAGCCGACAGGCAAACTT
TAGATAAGGCAGTCTTCAGA
Found at i:4472071 original size:19 final size:19
Alignment explanation
Indices: 4472043--4472097 Score: 92
Period size: 19 Copynumber: 2.9 Consensus size: 19
4472033 AATTCAACAA
*
4472043 TTTGTGTCGATACATAAGT
1 TTTGTATCGATACATAAGT
4472062 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
*
4472081 ATTGTATCGATACATAA
1 TTTGTATCGATACATAA
4472098 TTAGCTACTG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 34 1.00
ACGTcount: A:0.33, C:0.11, G:0.16, T:0.40
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:4472155 original size:13 final size:13
Alignment explanation
Indices: 4472137--4472162 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4472127 CATTTTTCTG
4472137 TGTATCGATACAT
1 TGTATCGATACAT
4472150 TGTATCGATACAT
1 TGTATCGATACAT
4472163 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:4472159 original size:33 final size:33
Alignment explanation
Indices: 4472117--4472183 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
4472107 GCCAAGGAAA
***
4472117 TGTATCGATACATTTTTCTGTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
*
4472150 TGTATCGATACATGGATCTTTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
4472183 T
1 T
4472184 TGGAAATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.25, C:0.15, G:0.16, T:0.43
Consensus pattern (33 bp):
TGTATCGATACATGGATCTGTGTATCGATACAT
Found at i:4472710 original size:10 final size:10
Alignment explanation
Indices: 4472694--4472723 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
4472684 AATCCTTTAG
4472694 CAAAAAAAC-
1 CAAAAAAACA
4472703 CAAAAAAACA
1 CAAAAAAACA
4472713 CAAAAAAACA
1 CAAAAAAACA
4472723 C
1 C
4472724 TATTCCATTG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 9 0.45
10 11 0.55
ACGTcount: A:0.77, C:0.23, G:0.00, T:0.00
Consensus pattern (10 bp):
CAAAAAAACA
Found at i:4475816 original size:42 final size:42
Alignment explanation
Indices: 4475769--4476781 Score: 591
Period size: 42 Copynumber: 24.0 Consensus size: 42
4475759 TGCGACAGGT
* * ** *
4475769 AGTCTCTAGGGTCAAAGCCGACAGATAGACTGAGGGTAGGAA
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAGGATAGGAA
* * * * *
4475811 AGTCTCTAGGGTCAAAGTCGACAGGCAGACTGAGGGTAAGAA
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAGGATAGGAA
* * * **
4475853 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTGAGGGTAAAAA
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAGGATAGGAA
* * * * * *
4475895 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTGGGGGTAAGAA
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAGGATAGGAA
* * *
4475937 AATCTCCAAGGTCAAAGCCGATAGGCAGACTAAGTG-TAGGAA
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAG-GATAGGAA
* * * * * * *
4475979 AGTCTCTAGGGTCAAATCCGATAGGCAAACTTAAGAT--GAA
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAGGATAGGAA
* * * * **
4476019 GCTGTCTCCAGGGTCAAAACCGACAGGCAGACTGAGGGGTAAAAAA
1 --AGTCTCCAAGGTCAAAGCCGACAGGCAGACTGA-GGAT-AGGAA
** * *
4476065 AGTCTCCAAGGTCAAAATCGACAGGCAGACTTTA-GATAAGG-T
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGAC-TGAGGAT-AGGAA
* ** * * * *
4476107 AGTTTCCAAGGTCAAAGCTAATAGGTAGACTTAAGGGTAGGAA
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGAC-TGAGGATAGGAA
* * * *
4476150 AGTCTCCAAGGTCAAAGCCGATAGGCAAACTTTA-GATGAGG-C
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGAC-TGAGGAT-AGGAA
* * * * *
4476192 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTGATGTTAGGAA
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAGGATAGGAA
* * * * * *
4476234 AGTCTCCAAGGTCAAAGCCAACAAGCAGATTTAAGATGAGG-C
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAGGAT-AGGAA
* * *
4476276 GGTCTCCAAGGTCAAAGCCAACAGGCAGACTGAGGGTAGGAA
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAGGATAGGAA
* * * * * *
4476318 AGTCTCCAAGGTCAAAGCCGACAAGTAAACTTAAGATGAGG-C
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAGGAT-AGGAA
* * ** * * * *
4476360 TGTTTTTAGGGTCAAAGCTGACAAGCAGATTGAGGATAGGAA
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAGGATAGGAA
* * * * * * * *
4476402 AGTTTCTAAGGTTAAAACCAACAAGCAGACTTTA-GATAAGG-C
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGAC-TGAGGAT-AGGAA
* * * *
4476444 AGTCTCCAAGGTCAAAGTCGATAGGCAAACTGAGGGTAGGAA
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAGGATAGGAA
* * * * * *
4476486 AGTCTCTAAGGTCAAAGCCGACAAGTAGACTTAAGATGAGG-C
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAGGAT-AGGAA
* ** * *
4476528 AGTCTCCAAGGTCAAAGCTGACAGATAGACTGGGGGTAGGAA
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAGGATAGGAA
* * *
4476570 AGTCTCCAAGGTCAAAGCCGATAAGCAGACTGAGGATAGAAA
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAGGATAGGAA
* * * * * * *
4476612 AGTCTCCAAAGTCAAAGCTGACAAGTAGACTTAAGATGAGG-C
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAGGAT-AGGAA
* * * * * *
4476654 AGTCTCTAGGGTCAAAGCTGACAGGTAGACTTTA-GATAAGG-C
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGAC-TGAGGAT-AGGAA
* * * *
4476696 AGTCTCCAAGGTCAAAGCCAACAGGCAGACTTAAGATGAGG-C
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAGGAT-AGGAA
* * * * *
4476738 AGTCTCTAGGGTCCAAGCGGACAGACAGACTGAGGATAGGAA
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAGGATAGGAA
4476780 AG
1 AG
4476782 ATCATATGGT
Statistics
Matches: 765, Mismatches: 178, Indels: 56
0.77 0.18 0.06
Matches are distributed among these distances:
40 3 0.00
41 26 0.03
42 646 0.84
43 59 0.08
44 27 0.04
45 2 0.00
46 2 0.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.18
Consensus pattern (42 bp):
AGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAGGATAGGAA
Found at i:4476750 original size:84 final size:84
Alignment explanation
Indices: 4475769--4476726 Score: 785
Period size: 84 Copynumber: 11.4 Consensus size: 84
4475759 TGCGACAGGT
* * ** * * *
4475769 AGTCTCTAGGGTCAAAGCCGACAGATAGACTGAGGGTAGGAAAGTCTCTAGGGTCAAAGTCGACA
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAGGGTAGGAAAGTCTCCAAGGTCAAAGCCGACA
* * * **
4475834 GGCAGAC-TGAGGGTAAGAA
66 AGCAGACTTTA-GATAAGGC
* * ** * * *
4475853 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTGAGGGTAAAAAAGTCTCTAGGGTCAAAGCCGATA
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAGGGTAGGAAAGTCTCCAAGGTCAAAGCCGACA
* *** * **
4475918 GGCAGACTGGGGGTAAGAA
66 AGCAGACTTTAGATAAGGC
* * * * * * * *
4475937 AATCTCCAAGGTCAAAGCCGATAGGCAGACTAAGTGTAGGAAAGTCTCTAGGGTCAAATCCGATA
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAGGGTAGGAAAGTCTCCAAGGTCAAAGCCGACA
* * *
4476002 GGCAAACTTAAGATGAA-GC
66 AGCAGACTTTAGAT-AAGGC
* * * ** **
4476021 TGTCTCCAGGGTCAAAACCGACAGGCAGACTGAGGGGTAAAAAAAGTCTCCAAGGTCAAAATCGA
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGACTGA-GGGT-AGGAAAGTCTCCAAGGTCAAAGCCGA
* *
4476086 CAGGCAGACTTTAGATAAGGT
64 CAAGCAGACTTTAGATAAGGC
* ** * * * *
4476107 AGTTTCCAAGGTCAAAGCTAATAGGTAGACTTAAGGGTAGGAAAGTCTCCAAGGTCAAAGCCGAT
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGAC-TGAGGGTAGGAAAGTCTCCAAGGTCAAAGCCGAC
* * *
4476172 AGGCAAACTTTAGATGAGGC
65 AAGCAGACTTTAGATAAGGC
* * * * * *
4476192 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTGATGTTAGGAAAGTCTCCAAGGTCAAAGCCAACA
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAGGGTAGGAAAGTCTCCAAGGTCAAAGCCGACA
*
4476257 AGCAGA-TTTAAGATGAGGC
66 AGCAGACTTT-AGATAAGGC
* *
4476276 GGTCTCCAAGGTCAAAGCCAACAGGCAGACTGAGGGTAGGAAAGTCTCCAAGGTCAAAGCCGACA
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAGGGTAGGAAAGTCTCCAAGGTCAAAGCCGACA
* * * *
4476341 AGTAAACTTAAGATGAGGC
66 AGCAGACTTTAGATAAGGC
* * ** * * * * * * * * * *
4476360 TGTTTTTAGGGTCAAAGCTGACAAGCAGATTGAGGATAGGAAAGTTTCTAAGGTTAAAACCAACA
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAGGGTAGGAAAGTCTCCAAGGTCAAAGCCGACA
4476425 AGCAGACTTTAGATAAGGC
66 AGCAGACTTTAGATAAGGC
* * * *
4476444 AGTCTCCAAGGTCAAAGTCGATAGGCAAACTGAGGGTAGGAAAGTCTCTAAGGTCAAAGCCGACA
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAGGGTAGGAAAGTCTCCAAGGTCAAAGCCGACA
* * *
4476509 AGTAGACTTAAGATGAGGC
66 AGCAGACTTTAGATAAGGC
* ** * *
4476528 AGTCTCCAAGGTCAAAGCTGACAGATAGACTGGGGGTAGGAAAGTCTCCAAGGTCAAAGCCGATA
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAGGGTAGGAAAGTCTCCAAGGTCAAAGCCGACA
* **
4476593 AGCAGAC-TGAGGAT-AGAAA
66 AGCAGACTTTA-GATAAG-GC
* * * * * * * * * * *
4476612 AGTCTCCAAAGTCAAAGCTGACAAGTAGACTTAAGATGAGG-CAGTCTCTAGGGTCAAAGCTGAC
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAGGGT-AGGAAAGTCTCCAAGGTCAAAGCCGAC
* *
4476676 AGGTAGACTTTAGATAAGGC
65 AAGCAGACTTTAGATAAGGC
*
4476696 AGTCTCCAAGGTCAAAGCCAACAGGCAGACT
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGACT
4476727 TAAGATGAGG
Statistics
Matches: 706, Mismatches: 155, Indels: 26
0.80 0.17 0.03
Matches are distributed among these distances:
83 7 0.01
84 557 0.79
85 80 0.11
86 60 0.08
87 2 0.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.18
Consensus pattern (84 bp):
AGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAGGGTAGGAAAGTCTCCAAGGTCAAAGCCGACA
AGCAGACTTTAGATAAGGC
Found at i:4488640 original size:18 final size:18
Alignment explanation
Indices: 4488617--4488658 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
4488607 AATAAATCCC
4488617 GAGATCTACAGAGTACCA
1 GAGATCTACAGAGTACCA
*
4488635 GAGATCTACGGAGTACCA
1 GAGATCTACAGAGTACCA
4488653 GAGATC
1 GAGATC
4488659 ATTTTTAAGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.36, C:0.21, G:0.26, T:0.17
Consensus pattern (18 bp):
GAGATCTACAGAGTACCA
Found at i:4490803 original size:17 final size:18
Alignment explanation
Indices: 4490770--4490803 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
4490760 TTTTAGCCTG
*
4490770 TTGCTTTGCTGTTCCACA
1 TTGCTTTGCTCTTCCACA
4490788 TTGCTTTG-TCTTCCAC
1 TTGCTTTGCTCTTCCAC
4490804 TTTCTTAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.09, C:0.29, G:0.15, T:0.47
Consensus pattern (18 bp):
TTGCTTTGCTCTTCCACA
Found at i:4491514 original size:13 final size:13
Alignment explanation
Indices: 4491496--4491525 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
4491486 ATGTTGTTCC
4491496 TTATTTATTTATT
1 TTATTTATTTATT
4491509 TTATTTATTTATT
1 TTATTTATTTATT
4491522 TTAT
1 TTAT
4491526 AGCAGCTAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (13 bp):
TTATTTATTTATT
Found at i:4493696 original size:15 final size:15
Alignment explanation
Indices: 4493667--4493716 Score: 50
Period size: 15 Copynumber: 3.4 Consensus size: 15
4493657 ATTAAAAATT
* *
4493667 ATATTATTAAGTTAA
1 ATATTATTTATTTAA
4493682 ATATATATTT-TTTAA
1 ATAT-TATTTATTTAA
*
4493697 TTATTATTTATTTAA
1 ATATTATTTATTTAA
4493712 A-ATTA
1 ATATTA
4493717 AAATTATTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
14 9 0.31
15 16 0.55
16 4 0.14
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (15 bp):
ATATTATTTATTTAA
Found at i:4495070 original size:30 final size:30
Alignment explanation
Indices: 4495034--4495092 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
4495024 GAATATTTTT
*
4495034 AATTCAAAAAAAGTT-TAAAAAAATCAAAAC
1 AATTC-AAAAAAGTTAGAAAAAAATCAAAAC
*
4495064 AATTCAAAAAAGTTAGAAAAAAATTAAAA
1 AATTCAAAAAAGTTAGAAAAAAATCAAAA
4495093 ATAGAAATTC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 9 0.35
30 17 0.65
ACGTcount: A:0.68, C:0.07, G:0.05, T:0.20
Consensus pattern (30 bp):
AATTCAAAAAAGTTAGAAAAAAATCAAAAC
Found at i:4497056 original size:20 final size:20
Alignment explanation
Indices: 4497019--4497058 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
4497009 TCACAAAATG
*
4497019 TAAAAGACTAAAGTAAATAA
1 TAAAAGACTAAAATAAATAA
4497039 TAAAA-ACTAAAATGAAATAA
1 TAAAAGACTAAAAT-AAATAA
4497059 AACAATTGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.68, C:0.05, G:0.07, T:0.20
Consensus pattern (20 bp):
TAAAAGACTAAAATAAATAA
Found at i:4497494 original size:40 final size:40
Alignment explanation
Indices: 4497448--4497523 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 40
4497438 AAAATAAGAA
* *
4497448 TTTTTAAATATAAA-TATAAAATTTTTTATCATTAAAAATT
1 TTTTTAAAAATAAACTATAAAA-CTTTTATCATTAAAAATT
* *
4497488 TTTTTAAAAATAAACTTTTAAACTTTTATCATTAAA
1 TTTTTAAAAATAAACTATAAAACTTTTATCATTAAA
4497524 TATATTATCT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
40 26 0.84
41 5 0.16
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (40 bp):
TTTTTAAAAATAAACTATAAAACTTTTATCATTAAAAATT
Found at i:4499345 original size:19 final size:20
Alignment explanation
Indices: 4499297--4499351 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 20
4499287 CTGCTAGTTT
* *
4499297 CATGTATCGATACAATTGAG
1 CATGTATCGATACAATCGAA
* *
4499317 TATATATCGATACAA-CGAA
1 CATGTATCGATACAATCGAA
4499336 CATGTATCGATACAAT
1 CATGTATCGATACAAT
4499352 GTATCAATAT
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
19 15 0.54
20 13 0.46
ACGTcount: A:0.40, C:0.16, G:0.15, T:0.29
Consensus pattern (20 bp):
CATGTATCGATACAATCGAA
Found at i:4499989 original size:16 final size:17
Alignment explanation
Indices: 4499968--4500010 Score: 56
Period size: 16 Copynumber: 2.6 Consensus size: 17
4499958 TATGTAAAAC
4499968 TTTATAAGAA-AAA-TTA
1 TTTATAA-AACAAATTTA
4499984 TTTATAAAACAAATTTA
1 TTTATAAAACAAATTTA
4500001 TTTA-AAAACA
1 TTTATAAAACA
4500011 TTTCTCCCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
15 2 0.08
16 16 0.64
17 7 0.28
ACGTcount: A:0.56, C:0.05, G:0.02, T:0.37
Consensus pattern (17 bp):
TTTATAAAACAAATTTA
Found at i:4501829 original size:13 final size:13
Alignment explanation
Indices: 4501799--4501838 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
4501789 ATAGTAACCC
*
4501799 ATGTATCGACACA
1 ATGTATCGATACA
* *
4501812 TTGTATCGATATA
1 ATGTATCGATACA
4501825 ATGTATCGATACA
1 ATGTATCGATACA
4501838 A
1 A
4501839 AGATCCTTGT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.33
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:4508156 original size:19 final size:20
Alignment explanation
Indices: 4508111--4508165 Score: 85
Period size: 20 Copynumber: 2.8 Consensus size: 20
4508101 CTGCCGGTTT
*
4508111 CATGTATCGATAAAATTGAG
1 CATGTATCGATACAATTGAG
*
4508131 TATGTATCGATACAATTGA-
1 CATGTATCGATACAATTGAG
4508150 CATGTATCGATACAAT
1 CATGTATCGATACAAT
4508166 GTATCAATAT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 15 0.47
20 17 0.53
ACGTcount: A:0.38, C:0.13, G:0.16, T:0.33
Consensus pattern (20 bp):
CATGTATCGATACAATTGAG
Found at i:4509945 original size:26 final size:25
Alignment explanation
Indices: 4509902--4509955 Score: 74
Period size: 27 Copynumber: 2.1 Consensus size: 25
4509892 AATTATTTTC
4509902 AATTAATTTTTAATTTTTCATCATATT
1 AATTAATTTTTAATTTTTCA--ATATT
*
4509929 AATTCATTTTT-ATTTTTCAATATT
1 AATTAATTTTTAATTTTTCAATATT
4509953 AAT
1 AAT
4509956 CAGTTTAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 8 0.31
26 8 0.31
27 10 0.38
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.59
Consensus pattern (25 bp):
AATTAATTTTTAATTTTTCAATATT
Found at i:4511665 original size:13 final size:13
Alignment explanation
Indices: 4511647--4511671 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4511637 CTATTTATGA
4511647 TGTATCGATACAC
1 TGTATCGATACAC
4511660 TGTATCGATACA
1 TGTATCGATACA
4511672 TGAATAGTGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAC
Found at i:4511755 original size:22 final size:22
Alignment explanation
Indices: 4511728--4511784 Score: 105
Period size: 22 Copynumber: 2.6 Consensus size: 22
4511718 TGTGAACAGT
4511728 ATGAACAGTGATGTATCGATAC
1 ATGAACAGTGATGTATCGATAC
*
4511750 ATGAACAGTGATATATCGATAC
1 ATGAACAGTGATGTATCGATAC
4511772 ATGAACAGTGATG
1 ATGAACAGTGATG
4511785 AATAGTACTG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.39, C:0.12, G:0.23, T:0.26
Consensus pattern (22 bp):
ATGAACAGTGATGTATCGATAC
Found at i:4511861 original size:53 final size:53
Alignment explanation
Indices: 4511799--4511934 Score: 229
Period size: 53 Copynumber: 2.6 Consensus size: 53
4511789 GTACTGCCAA
4511799 TGTATCGATACATATTGTGTGTATCGATACAAATTTGACTACTGCCAAAT-ACC
1 TGTATCGATACATATTGTGTGTATCGATACAAATTTGACTACTGCC-AATGACC
* *
4511852 TGTATCGATACATATTGTGTGTATCGATACAAATTTGGCTACTGCCAATGTCC
1 TGTATCGATACATATTGTGTGTATCGATACAAATTTGACTACTGCCAATGACC
*
4511905 TGTATCGATACATATTGTGCGTATCGATAC
1 TGTATCGATACATATTGTGTGTATCGATAC
4511935 TATGCAATCT
Statistics
Matches: 79, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
52 3 0.04
53 76 0.96
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (53 bp):
TGTATCGATACATATTGTGTGTATCGATACAAATTTGACTACTGCCAATGACC
Found at i:4512040 original size:21 final size:21
Alignment explanation
Indices: 4512014--4512054 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
4512004 GTCAACCTTG
4512014 TGTATTGATACCAATA-GTATA
1 TGTATTGATA-CAATACGTATA
4512035 TGTATTGATACAATACGTAT
1 TGTATTGATACAATACGTAT
4512055 TTTTACTTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.39
Consensus pattern (21 bp):
TGTATTGATACAATACGTATA
Found at i:4512424 original size:56 final size:56
Alignment explanation
Indices: 4512357--4512471 Score: 212
Period size: 56 Copynumber: 2.1 Consensus size: 56
4512347 TTATGATCTT
*
4512357 ACCAATTATCACAAGGTCGTTGATCCATCATACTCTTCGTTTCATCAAAGATCGTA
1 ACCAATTATCACAAGGTCGTTGATCCATCATACTCTCCGTTTCATCAAAGATCGTA
*
4512413 ACCAATTATCACAAGGTCGTTGATCCATCATACTCTCCGTTTCATTAAAGATCGTA
1 ACCAATTATCACAAGGTCGTTGATCCATCATACTCTCCGTTTCATCAAAGATCGTA
4512469 ACC
1 ACC
4512472 TATAATTTGA
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 57 1.00
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.31
Consensus pattern (56 bp):
ACCAATTATCACAAGGTCGTTGATCCATCATACTCTCCGTTTCATCAAAGATCGTA
Found at i:4514046 original size:20 final size:20
Alignment explanation
Indices: 4514023--4514095 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
4514013 ACAATTCAAA
4514023 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
4514043 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
4514064 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
4514084 GTATCGATACAT
1 GTATCGATACAT
4514096 AAAAAAGATG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:4514067 original size:21 final size:21
Alignment explanation
Indices: 4514041--4514116 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
4514031 ACATGTTGCA
4514041 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
4514062 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
*
4514082 ATGTATCGATACATAAAAAAG
1 ATGTATCGATACATGAAAAAG
4514103 ATGTATCGATACAT
1 ATGTATCGATACAT
4514117 TTCTTGGCAG
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.29
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:4514074 original size:41 final size:41
Alignment explanation
Indices: 4514023--4514116 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
4514013 ACAATTCAAA
*
4514023 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
4514064 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
4514105 GTATCGATACAT
1 GTATCGATACAT
4514117 TTCTTGGCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.30
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:4514173 original size:13 final size:13
Alignment explanation
Indices: 4514155--4514180 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4514145 TACAGCAAGT
4514155 ATGTATCGATACA
1 ATGTATCGATACA
4514168 ATGTATCGATACA
1 ATGTATCGATACA
4514181 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:4516429 original size:21 final size:21
Alignment explanation
Indices: 4516396--4516440 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
4516386 TTGCAAGTTG
*
4516396 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
4516418 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
4516438 AAA
1 AAA
4516441 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:4518264 original size:15 final size:15
Alignment explanation
Indices: 4518244--4518274 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
4518234 TAAAAATGTC
*
4518244 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
4518259 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
4518274 C
1 C
4518275 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:4520368 original size:20 final size:21
Alignment explanation
Indices: 4520289--4520367 Score: 72
Period size: 20 Copynumber: 3.7 Consensus size: 21
4520279 AATGTCCAAA
*
4520289 ATGTATCGATACATGTTTT-T
1 ATGTATCGATACATCTTTTCT
* *
4520309 GTGTATCGATACATCTGGAAATTCT
1 ATGTATCGATACATCT----TTTCT
4520334 ATGTATCGATACAT-TTTTCT
1 ATGTATCGATACATCTTTTCT
*
4520354 TTGTATCGATACAT
1 ATGTATCGATACAT
4520368 TGTATCGATA
Statistics
Matches: 48, Mismatches: 6, Indels: 10
0.75 0.09 0.16
Matches are distributed among these distances:
20 31 0.65
24 3 0.06
25 14 0.29
ACGTcount: A:0.27, C:0.14, G:0.15, T:0.44
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTCT
Found at i:4520372 original size:13 final size:13
Alignment explanation
Indices: 4520354--4520392 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
4520344 ACATTTTTCT
4520354 TTGTATCGATACA
1 TTGTATCGATACA
4520367 TTGTATCGATACA
1 TTGTATCGATACA
*
4520380 CTGTATCGATACA
1 TTGTATCGATACA
4520393 GGGTGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:4522869 original size:20 final size:20
Alignment explanation
Indices: 4522846--4522918 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
4522836 ACAATTCAAA
4522846 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
4522866 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
4522887 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
4522907 GTATCGATACAT
1 GTATCGATACAT
4522919 AAAAAAGATG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:4522890 original size:21 final size:21
Alignment explanation
Indices: 4522864--4522939 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
4522854 ACATGTTGCA
4522864 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
4522885 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
*
4522905 ATGTATCGATACATAAAAAAG
1 ATGTATCGATACATGAAAAAG
4522926 ATGTATCGATACAT
1 ATGTATCGATACAT
4522940 TTCTTGGCAG
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.29
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:4522897 original size:41 final size:41
Alignment explanation
Indices: 4522846--4522939 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
4522836 ACAATTCAAA
*
4522846 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
4522887 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
4522928 GTATCGATACAT
1 GTATCGATACAT
4522940 TTCTTGGCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.30
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:4522996 original size:13 final size:13
Alignment explanation
Indices: 4522978--4523003 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4522968 TACAGCAAGT
4522978 ATGTATCGATACA
1 ATGTATCGATACA
4522991 ATGTATCGATACA
1 ATGTATCGATACA
4523004 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:4526872 original size:34 final size:35
Alignment explanation
Indices: 4526834--4526900 Score: 93
Period size: 36 Copynumber: 1.9 Consensus size: 35
4526824 CCTTACAACA
4526834 CTATC-TTTC-AAGGCTAAAATAGAAACCTCTCTCT
1 CTATCTTTTCAAAGGCTAAAATAG-AACCTCTCTCT
*
4526868 CTATCTTTTTCAAAGGCTAAGATAGAACCTCTC
1 CTATC-TTTTCAAAGGCTAAAATAGAACCTCTC
4526901 AATCACTTAG
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
34 5 0.17
36 12 0.41
37 12 0.41
ACGTcount: A:0.31, C:0.25, G:0.10, T:0.33
Consensus pattern (35 bp):
CTATCTTTTCAAAGGCTAAAATAGAACCTCTCTCT
Found at i:4527388 original size:20 final size:20
Alignment explanation
Indices: 4527347--4527389 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
4527337 GTGTGAACAG
*
4527347 TGATGTATCGATACTATTTA
1 TGATGTATCGATACTATGTA
4527367 TGATGTATCGATAC-ACTGTA
1 TGATGTATCGATACTA-TGTA
4527387 TGA
1 TGA
4527390 ATACAATGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 1 0.05
20 20 0.95
ACGTcount: A:0.30, C:0.12, G:0.19, T:0.40
Consensus pattern (20 bp):
TGATGTATCGATACTATGTA
Found at i:4527406 original size:13 final size:13
Alignment explanation
Indices: 4527369--4527407 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
4527359 ACTATTTATG
4527369 ATGTATCGATACA
1 ATGTATCGATACA
*
4527382 CTGTAT-GAATACA
1 ATGTATCG-ATACA
4527395 ATGTATCGATACA
1 ATGTATCGATACA
4527408 TGAATAGTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
12 1 0.05
13 20 0.91
14 1 0.05
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:4527493 original size:54 final size:54
Alignment explanation
Indices: 4527405--4527539 Score: 137
Period size: 54 Copynumber: 2.5 Consensus size: 54
4527395 ATGTATCGAT
* * * * * * *
4527405 ACATGAATAGTGATGTACAGTGATTTTTATCGATATATGAATAGTGATATGTAAAC
1 ACATGAACAGTGATGAATAGTGA--TGTATCGATACATGAACAGTGATATATAAAC
* ** *
4527461 AGTATGAACAGT-ATGAATAGTGATGTATCGATACATGAACAGTGATATATCGAT
1 A-CATGAACAGTGATGAATAGTGATGTATCGATACATGAACAGTGATATATAAAC
4527515 ACATGAACAGTGATGAATAGTGATG
1 ACATGAACAGTGATGAATAGTGATG
4527540 AACAGTGAAA
Statistics
Matches: 65, Mismatches: 12, Indels: 6
0.78 0.14 0.07
Matches are distributed among these distances:
53 9 0.14
54 38 0.58
56 10 0.15
57 8 0.12
ACGTcount: A:0.39, C:0.08, G:0.22, T:0.31
Consensus pattern (54 bp):
ACATGAACAGTGATGAATAGTGATGTATCGATACATGAACAGTGATATATAAAC
Found at i:4527498 original size:22 final size:22
Alignment explanation
Indices: 4527473--4527529 Score: 96
Period size: 22 Copynumber: 2.6 Consensus size: 22
4527463 TATGAACAGT
*
4527473 ATGAATAGTGATGTATCGATAC
1 ATGAACAGTGATGTATCGATAC
*
4527495 ATGAACAGTGATATATCGATAC
1 ATGAACAGTGATGTATCGATAC
4527517 ATGAACAGTGATG
1 ATGAACAGTGATG
4527530 AATAGTGATG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.39, C:0.11, G:0.23, T:0.28
Consensus pattern (22 bp):
ATGAACAGTGATGTATCGATAC
Found at i:4527536 original size:10 final size:10
Alignment explanation
Indices: 4527517--4527547 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
4527507 ATATCGATAC
4527517 ATGAACAGTG
1 ATGAACAGTG
*
4527527 ATGAATAGTG
1 ATGAACAGTG
4527537 ATGAACAGTG
1 ATGAACAGTG
4527547 A
1 A
4527548 AAATGAGATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.42, C:0.06, G:0.29, T:0.23
Consensus pattern (10 bp):
ATGAACAGTG
Found at i:4527636 original size:53 final size:53
Alignment explanation
Indices: 4527571--4527759 Score: 342
Period size: 53 Copynumber: 3.6 Consensus size: 53
4527561 CTACTGCCAA
*
4527571 TGTATCGATACATATTTTGTGTATCGATACAAATTTGACTACTGCCAAAGACC
1 TGTATCGATACATATTGTGTGTATCGATACAAATTTGACTACTGCCAAAGACC
4527624 TGTATCGATACATATTGTGTGTATCGATACAAATTTGACTACTGCCAAAGACC
1 TGTATCGATACATATTGTGTGTATCGATACAAATTTGACTACTGCCAAAGACC
* * *
4527677 TGTATCGATACATATTGTGTGTATCGATACAAATTTGGCTACTGCCAATGTCC
1 TGTATCGATACATATTGTGTGTATCGATACAAATTTGACTACTGCCAAAGACC
4527730 TGTATCGATACATATTGTGTGTATCGATAC
1 TGTATCGATACATATTGTGTGTATCGATAC
4527760 TATGCAATCT
Statistics
Matches: 132, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
53 132 1.00
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.35
Consensus pattern (53 bp):
TGTATCGATACATATTGTGTGTATCGATACAAATTTGACTACTGCCAAAGACC
Found at i:4527701 original size:19 final size:19
Alignment explanation
Indices: 4527677--4527759 Score: 63
Period size: 19 Copynumber: 4.6 Consensus size: 19
4527667 GCCAAAGACC
4527677 TGTATCGATACATATTGTG
1 TGTATCGATACATATTGTG
*
4527696 TGTATCGATACAAATT-TG
1 TGTATCGATACATATTGTG
* *
4527714 -GCTA-C--TGCCA-A-TGTCC
1 TG-TATCGAT-ACATATTGT-G
4527730 TGTATCGATACATATTGTG
1 TGTATCGATACATATTGTG
4527749 TGTATCGATAC
1 TGTATCGATAC
4527760 TATGCAATCT
Statistics
Matches: 49, Mismatches: 5, Indels: 20
0.66 0.07 0.27
Matches are distributed among these distances:
14 1 0.02
15 3 0.06
16 4 0.08
17 4 0.08
18 6 0.12
19 28 0.57
20 3 0.06
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.37
Consensus pattern (19 bp):
TGTATCGATACATATTGTG
Found at i:4527792 original size:20 final size:20
Alignment explanation
Indices: 4527730--4527799 Score: 74
Period size: 20 Copynumber: 3.5 Consensus size: 20
4527720 GCCAATGTCC
*
4527730 TGTATCGATACATATT-GTG
1 TGTATCGATACATATTAATG
* *
4527749 TGTATCGATAC-TATGCAATC
1 TGTATCGATACATAT-TAATG
4527769 TGTATCGATACAT-TTAAATG
1 TGTATCGATACATATT-AATG
4527789 TGTATCGATAC
1 TGTATCGATAC
4527800 TTTTCAGGGT
Statistics
Matches: 42, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
18 3 0.07
19 11 0.26
20 27 0.64
21 1 0.02
ACGTcount: A:0.30, C:0.14, G:0.17, T:0.39
Consensus pattern (20 bp):
TGTATCGATACATATTAATG
Found at i:4527865 original size:21 final size:21
Alignment explanation
Indices: 4527839--4527879 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
4527829 GTCAACCTTG
4527839 TGTATTGATACCAATA-GTATA
1 TGTATTGATA-CAATACGTATA
4527860 TGTATTGATACAATACGTAT
1 TGTATTGATACAATACGTAT
4527880 TTTTACTTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.39
Consensus pattern (21 bp):
TGTATTGATACAATACGTATA
Found at i:4531265 original size:36 final size:35
Alignment explanation
Indices: 4531219--4531290 Score: 108
Period size: 36 Copynumber: 2.0 Consensus size: 35
4531209 ATATTGCTCA
*
4531219 TAAGAATGACATACTGATGCTCTAAGCTACTAAGG
1 TAAGAATGACATACTGATGCTCTAAGCCACTAAGG
* *
4531254 TAAGAAATGACATATTGATGCTCTAGGCCACTAAGG
1 TAAG-AATGACATACTGATGCTCTAAGCCACTAAGG
4531290 T
1 T
4531291 CTGGTTGTCT
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
35 4 0.12
36 29 0.88
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.26
Consensus pattern (35 bp):
TAAGAATGACATACTGATGCTCTAAGCCACTAAGG
Found at i:4533584 original size:15 final size:17
Alignment explanation
Indices: 4533556--4533591 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
4533546 TTACCTTGTG
4533556 AAATTTTTTGAAAATA-
1 AAATTTTTTGAAAATAT
4533572 AAATTTTTT-AAAATAT
1 AAATTTTTTGAAAATAT
4533588 AAAT
1 AAAT
4533592 GCATGATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 6 0.32
16 13 0.68
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (17 bp):
AAATTTTTTGAAAATAT
Found at i:4538165 original size:23 final size:24
Alignment explanation
Indices: 4538129--4538176 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 24
4538119 ACTAGCTTGG
4538129 TTTTTCACTATTTTTCT-CTCTCTT
1 TTTTTCAC-ATTTTTCTCCTCTCTT
*
4538153 TTTTTCTC-TTTTTCTCCTCTCTT
1 TTTTTCACATTTTTCTCCTCTCTT
4538176 T
1 T
4538177 GCTAGCTGAC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 7 0.32
23 8 0.36
24 7 0.32
ACGTcount: A:0.04, C:0.27, G:0.00, T:0.69
Consensus pattern (24 bp):
TTTTTCACATTTTTCTCCTCTCTT
Found at i:4540037 original size:19 final size:19
Alignment explanation
Indices: 4540013--4540053 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
4540003 ATAGGTAAAC
*
4540013 AAGGGAT-AAACAATTGATT
1 AAGGGATGAAA-AATTGACT
4540032 AAGGGATGAAAAATTGACT
1 AAGGGATGAAAAATTGACT
4540051 AAG
1 AAG
4540054 ATTGAACTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 17 0.85
20 3 0.15
ACGTcount: A:0.49, C:0.05, G:0.24, T:0.22
Consensus pattern (19 bp):
AAGGGATGAAAAATTGACT
Found at i:4540505 original size:48 final size:47
Alignment explanation
Indices: 4540404--4540626 Score: 174
Period size: 48 Copynumber: 4.9 Consensus size: 47
4540394 ACAATAGTGA
* * * *
4540404 AAAAAAAGTTTGACCAGGTCCTAATGCCAATACTAGTCAAACAATGGT
1 AAAAAGAGTTTGACCAAGTCCTAATGCTAATA-TAGTCAAACAAGGGT
* * * *
4540452 GAAAAGAGTTCGACCAAGTCCTAACGCTAATGTAGTCAAACTAAGGGT
1 AAAAAGAGTTTGACCAAGTCCTAATGCTAATATAGTCAAAC-AAGGGT
* * *
4540500 AAAAAGAGTTTGACCAAG-ACTAATGCTAATATAGTCAAACGAGAG-
1 AAAAAGAGTTTGACCAAGTCCTAATGCTAATATAGTCAAACAAGGGT
* * * * * * *
4540545 -AAAAGAGTTTGACC-AG-GCTAATGCCAATACAGT-TAA-ATGAGA
1 AAAAAGAGTTTGACCAAGTCCTAATGCTAATATAGTCAAACAAGGGT
* * * *
4540587 AAAAAGAGTTTGACCAAG-GCTAATGCCAATACAATCAAAC
1 AAAAAGAGTTTGACCAAGTCCTAATGCTAATATAGTCAAAC
4540627 GAGAATGAAA
Statistics
Matches: 146, Mismatches: 23, Indels: 14
0.80 0.13 0.08
Matches are distributed among these distances:
41 3 0.02
42 2 0.01
43 30 0.21
44 32 0.22
45 2 0.01
46 3 0.02
47 28 0.19
48 46 0.32
ACGTcount: A:0.43, C:0.17, G:0.19, T:0.21
Consensus pattern (47 bp):
AAAAAGAGTTTGACCAAGTCCTAATGCTAATATAGTCAAACAAGGGT
Found at i:4540559 original size:44 final size:44
Alignment explanation
Indices: 4540356--4540824 Score: 368
Period size: 44 Copynumber: 10.2 Consensus size: 44
4540346 GAGTAAAGAT
* * * * *
4540356 AAAAGGAGTTTGACTAGGACTAATGCCCATACAGTCAAACAATAGTGAA
1 AAAA-GAGTTTGACCAAGACTAATGCCAATACAGTCAAAC----GAGAG
* * * * *
4540405 AAAAAAGTTTGACCAGGTCCTAATGCCAATACTAGTCAAACAATGGTG
1 AAAAGAGTTTGACCAAG-ACTAATGCCAATAC-AGTCAAACGA--GAG
* * * * ** * *
4540453 AAAAGAGTTCGACCAAGTCCTAACGCTAATGTAGTCAAACTAAGGG
1 AAAAGAGTTTGACCAAG-ACTAATGCCAATACAGTCAAAC-GAGAG
* *
4540499 TAAAAAGAGTTTGACCAAGACTAATGCTAATATAGTCAAACGAGAG
1 --AAAAGAGTTTGACCAAGACTAATGCCAATACAGTCAAACGAGAG
* * * *
4540545 AAAAGAGTTTGACC-AGGCTAATGCCAATACAGTTAAATGAGAA
1 AAAAGAGTTTGACCAAGACTAATGCCAATACAGTCAAACGAGAG
* *
4540588 AAAAGAGTTTGACCAAGGCTAATGCCAATACAATCAAACGAGAATG
1 AAAAGAGTTTGACCAAGACTAATGCCAATACAGTCAAACGAG-A-G
* * * * * * *
4540634 AAAAAGAGAGTTTGACTAGGTCTAACTGCCAATAAAATCAAATGAAAG
1 --AAA-AGAGTTTGACCAAGACTAA-TGCCAATACAGTCAAACGAGAG
* * * *
4540682 AAAAGATTTTGACTAGGACTAATGCCAATACAGTCAAACGATAG
1 AAAAGAGTTTGACCAAGACTAATGCCAATACAGTCAAACGAGAG
* *
4540726 AAAAGAGTTTGACC-AGAACTAATGCCAATACAATCAAACAAGAG
1 AAAAGAGTTTGACCAAG-ACTAATGCCAATACAGTCAAACGAGAG
*
4540770 AAAAGAGTTTGA-CTAGAACTAATGCCAATACAGTCAAACGAGAG
1 AAAAGAGTTTGACCAAG-ACTAATGCCAATACAGTCAAACGAGAG
4540814 AAAAGAGTTTG
1 AAAAGAGTTTG
4540825 TTTCGTAAGA
Statistics
Matches: 352, Mismatches: 52, Indels: 37
0.80 0.12 0.08
Matches are distributed among these distances:
43 39 0.11
44 143 0.41
45 18 0.05
46 8 0.02
47 27 0.08
48 59 0.17
49 33 0.09
50 25 0.07
ACGTcount: A:0.44, C:0.16, G:0.20, T:0.20
Consensus pattern (44 bp):
AAAAGAGTTTGACCAAGACTAATGCCAATACAGTCAAACGAGAG
Found at i:4548180 original size:20 final size:20
Alignment explanation
Indices: 4548155--4548227 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
4548145 CATCCTTTTT
4548155 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
4548175 ATGTATCGATACATTTTTTTC
1 ATGTATCGATACA-TTGCAAC
4548196 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
4548216 ATGTATCGATAC
1 ATGTATCGATAC
4548228 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.37
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:4548200 original size:21 final size:21
Alignment explanation
Indices: 4548134--4548210 Score: 86
Period size: 21 Copynumber: 3.7 Consensus size: 21
4548124 CTGCCAAGAA
*
4548134 ATGTATCGATACATCCTTTTT-
1 ATGTATCGATACAT-TTTTTTC
****
4548155 ATGTATCGATACA-TTGCAAC
1 ATGTATCGATACATTTTTTTC
4548175 ATGTATCGATACATTTTTTTC
1 ATGTATCGATACATTTTTTTC
4548196 ATGTATCGATACATT
1 ATGTATCGATACATT
4548211 GCAACATGTA
Statistics
Matches: 45, Mismatches: 9, Indels: 4
0.78 0.16 0.07
Matches are distributed among these distances:
19 1 0.02
20 13 0.29
21 31 0.69
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.43
Consensus pattern (21 bp):
ATGTATCGATACATTTTTTTC
Found at i:4548200 original size:41 final size:41
Alignment explanation
Indices: 4548134--4548227 Score: 163
Period size: 41 Copynumber: 2.3 Consensus size: 41
4548124 CTGCCAAGAA
4548134 ATGTATCGATACATCCTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACATCCTTTTTATGTATCGATACATTGCAAC
*
4548175 ATGTATCGATACAT-TTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCCTTTTT-ATGTATCGATACATTGCAAC
4548216 ATGTATCGATAC
1 ATGTATCGATAC
4548228 TTTGAATTGT
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
40 5 0.10
41 46 0.90
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39
Consensus pattern (41 bp):
ATGTATCGATACATCCTTTTTATGTATCGATACATTGCAAC
Found at i:4549099 original size:157 final size:160
Alignment explanation
Indices: 4548825--4549120 Score: 377
Period size: 157 Copynumber: 1.9 Consensus size: 160
4548815 TTTCTTGAAA
* ** *
4548825 AAAAAGAATTTCAAGAAAAAAATAAAAAACTCATGAACATGACTGAATTTTTGAAAATTGAATCA
1 AAAAAGAATTTCAAGAAAAAAATAAAAAACTCATGAACATGAATGAATTTTAAAAAAATGAATCA
* * * *
4548890 ATATGAATCAAATAATGATGTTTGATGAATTTGAAAAATTGAAAACCGAGAAAAATCGCCT-CGA
66 ATATGAATCAAATAATAATATTTGATGAATTTGAAAAATTAAAAACCAAGAAAAATC-CCTCCGA
4548954 AAAAAATTACGGAGTAGAAAACATCGTATTT
130 AAAAAATTACGGAGTAGAAAACATCGTATTT
* * * *
4548985 AAAAA-AA-TTCAAG-AAAAATTAAAAAACTCATGAATATGAATGAATTTTAAAAAAATGATTTA
1 AAAAAGAATTTCAAGAAAAAAATAAAAAACTCATGAACATGAATGAATTTTAAAAAAATGAATCA
* * ** *
4549047 ATATGAAAT-AAATGATAATATTTGATGAATTTTAAAAATTAAAAATTAAGAAAAATCCTTCCGA
66 ATATG-AATCAAATAATAATATTTGATGAATTTGAAAAATTAAAAACCAAGAAAAATCCCTCCGA
*
4549111 AAAAATTTAC
130 AAAAAATTAC
4549121 AAAAAAAAAC
Statistics
Matches: 116, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
156 2 0.02
157 98 0.84
158 9 0.08
159 2 0.02
160 5 0.04
ACGTcount: A:0.53, C:0.08, G:0.11, T:0.28
Consensus pattern (160 bp):
AAAAAGAATTTCAAGAAAAAAATAAAAAACTCATGAACATGAATGAATTTTAAAAAAATGAATCA
ATATGAATCAAATAATAATATTTGATGAATTTGAAAAATTAAAAACCAAGAAAAATCCCTCCGAA
AAAAATTACGGAGTAGAAAACATCGTATTT
Found at i:4551070 original size:21 final size:20
Alignment explanation
Indices: 4551046--4551095 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
4551036 TTTTACGATT
*
4551046 TGTATTGATACAATTAGTGAA
1 TGTATTGATAC-ATAAGTGAA
* *
4551067 TGTATCGATACATAAGTTAA
1 TGTATTGATACATAAGTGAA
*
4551087 TATATTGAT
1 TGTATTGAT
4551096 TCATGTCTCA
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
20 14 0.58
21 10 0.42
ACGTcount: A:0.38, C:0.06, G:0.16, T:0.40
Consensus pattern (20 bp):
TGTATTGATACATAAGTGAA
Found at i:4551175 original size:20 final size:20
Alignment explanation
Indices: 4551150--4551199 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
4551140 TGAAAAATTA
**
4551150 TATCGATACATTAGTAAATG
1 TATCGATACATTACCAAATG
* *
4551170 TATCGATATATTTCCAAATG
1 TATCGATACATTACCAAATG
4551190 TATCGATACA
1 TATCGATACA
4551200 ATTTATTTTG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.36
Consensus pattern (20 bp):
TATCGATACATTACCAAATG
Found at i:4551949 original size:31 final size:31
Alignment explanation
Indices: 4551914--4551975 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
4551904 GCCTGCATTG
4551914 TTGTGCCAGTAAATAAATCAACCTAGCTTGC
1 TTGTGCCAGTAAATAAATCAACCTAGCTTGC
*** *
4551945 TTGTGTTGGTATATAAATCAACCTAGCTTGC
1 TTGTGCCAGTAAATAAATCAACCTAGCTTGC
4551976 ATTGGTAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (31 bp):
TTGTGCCAGTAAATAAATCAACCTAGCTTGC
Found at i:4551981 original size:27 final size:28
Alignment explanation
Indices: 4551922--4551987 Score: 80
Period size: 31 Copynumber: 2.3 Consensus size: 28
4551912 TGTTGTGCCA
*
4551922 GTAAATAAATCAACCTAGCTTGCTTGTGTTG
1 GTAAATAAATCAACCTAGCTTGC---TATTG
*
4551953 GTATATAAATCAACCTAGCTTGC-ATTG
1 GTAAATAAATCAACCTAGCTTGCTATTG
4551980 GTAAATAA
1 GTAAATAA
4551988 GCCTGCATTG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
27 10 0.31
31 22 0.69
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (28 bp):
GTAAATAAATCAACCTAGCTTGCTATTG
Found at i:4552494 original size:13 final size:13
Alignment explanation
Indices: 4552476--4552502 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
4552466 ACATTATGCT
4552476 TTGTATCGATACA
1 TTGTATCGATACA
4552489 TTGTATCGATACA
1 TTGTATCGATACA
4552502 T
1 T
4552503 GGACAATTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:4561887 original size:19 final size:20
Alignment explanation
Indices: 4561863--4561915 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 20
4561853 GTAGCGACAT
4561863 TGTATCGATACAACACT-TA
1 TGTATCGATACAACACTGTA
* **
4561882 TGTATCAATACATTTACTGTA
1 TGTATCGATACA-ACACTGTA
4561903 TGTATCGATACAA
1 TGTATCGATACAA
4561916 ATTGTTGAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
19 11 0.41
20 3 0.11
21 13 0.48
ACGTcount: A:0.36, C:0.17, G:0.11, T:0.36
Consensus pattern (20 bp):
TGTATCGATACAACACTGTA
Found at i:4564896 original size:20 final size:19
Alignment explanation
Indices: 4564851--4564908 Score: 66
Period size: 19 Copynumber: 3.1 Consensus size: 19
4564841 TTGCATCGAT
4564851 ACAA-TGTATCGATACAT-
1 ACAATTGTATCGATACATG
*
4564868 ATTAATTGTATCGATACATGG
1 A-CAATTGTATCGATACAT-G
*
4564889 ACAATTGTATTGATACATG
1 ACAATTGTATCGATACATG
4564908 A
1 A
4564909 GATTGGCAGT
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
17 1 0.03
18 2 0.06
19 15 0.44
20 15 0.44
21 1 0.03
ACGTcount: A:0.38, C:0.12, G:0.16, T:0.34
Consensus pattern (19 bp):
ACAATTGTATCGATACATG
Found at i:4564964 original size:20 final size:21
Alignment explanation
Indices: 4564939--4564990 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 21
4564929 CCACAGTTTT
4564939 TATCGATACATG-GGACAA-TG
1 TATCGATACATGAGGA-AATTG
*
4564959 TATCGATACATGATGAAATTG
1 TATCGATACATGAGGAAATTG
4564980 TATCGATACAT
1 TATCGATACAT
4564991 TGCTTGTAAC
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
20 14 0.48
21 15 0.52
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (21 bp):
TATCGATACATGAGGAAATTG
Found at i:4567158 original size:78 final size:79
Alignment explanation
Indices: 4566982--4567161 Score: 272
Period size: 78 Copynumber: 2.3 Consensus size: 79
4566972 TTCTGGAGAT
*
4566982 AAAAACGAGGTTGGAGTATCCCCTCGAAAATAACAGGGTTAAAGTATCCCCGATTGTGAAAAATT
1 AAAATCGAGGTTGGAGTATCCCCTCGAAAATAACAGGGTTAAAGTATCCCCGATTGTGAAAAATT
*
4567047 GGTGTTCTAAAAAT
66 GGTGTTCTAAAAAG
* * * * * **
4567061 AGAATTGGGGTTGGGGTATCCCTTCGAAAATAATGGGGTTAAAGTAT-CCCGATTGTGAAAAATT
1 AAAATCGAGGTTGGAGTATCCCCTCGAAAATAACAGGGTTAAAGTATCCCCGATTGTGAAAAATT
4567125 GGTGTTCTAAAAAG
66 GGTGTTCTAAAAAG
4567139 AAAATCGAGGTTGGAGTATCCCC
1 AAAATCGAGGTTGGAGTATCCCC
4567162 GATGGTGAAA
Statistics
Matches: 87, Mismatches: 14, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
78 48 0.55
79 39 0.45
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.27
Consensus pattern (79 bp):
AAAATCGAGGTTGGAGTATCCCCTCGAAAATAACAGGGTTAAAGTATCCCCGATTGTGAAAAATT
GGTGTTCTAAAAAG
Found at i:4567170 original size:51 final size:51
Alignment explanation
Indices: 4567097--4567212 Score: 144
Period size: 51 Copynumber: 2.3 Consensus size: 51
4567087 AAAATAATGG
* * * *
4567097 GGTTAAAGTAT-CCCGATTGTGAAAAATTGGTGTTCTAAAAAGAAAATCGA
1 GGTTAGAGTATCCCCGATGGTGAAAAATTAGTGTTCTAAAAAGAAAACCGA
* * ** *
4567147 GGTTGGAGTATCCCCGATGGTGAAAAATTAGTGTTTTGGAAATAAAACCGA
1 GGTTAGAGTATCCCCGATGGTGAAAAATTAGTGTTCTAAAAAGAAAACCGA
4567198 GGTTAGAGTATCCCC
1 GGTTAGAGTATCCCC
4567213 TCGAAAATAA
Statistics
Matches: 55, Mismatches: 10, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
50 9 0.16
51 46 0.84
ACGTcount: A:0.34, C:0.13, G:0.25, T:0.28
Consensus pattern (51 bp):
GGTTAGAGTATCCCCGATGGTGAAAAATTAGTGTTCTAAAAAGAAAACCGA
Found at i:4567230 original size:79 final size:79
Alignment explanation
Indices: 4567144--4567585 Score: 385
Period size: 79 Copynumber: 5.5 Consensus size: 79
4567134 AAAAGAAAAT
* * * *
4567144 CGAGGTTGGAGTATCCCCGATGGTGAAAAAT-TAGTGTTTTGGAAATAAAACCGAGGTTAGAGTA
1 CGAGGTTGAAGTATCCCCGATGGTGAAAAATCGA-TGTTTTGGAAATAAAATCGAGGTTGGAGTA
4567208 TCCCCTC-GAAAATAA
65 TCCCCTCAG-AAATAA
* ** ** *
4567223 CGAGGTTGGAGTATCATCGATTTTGAAAAATCAATGTTTTGGAAAT-AAATCCTG-GGTTGGAGT
1 CGAGGTTGAAGTATCCCCGATGGTGAAAAATCGATGTTTTGGAAATAAAAT-C-GAGGTTGGAGT
*
4567286 ATACCCTCAGAAATAA
64 ATCCCCTCAGAAATAA
* * * * *
4567302 CGGGGTTGAAGTAT-CTCTATGTGAATATTGAAAAAATCGATATTTTGGAAATAAAATCGAGATT
1 CGAGGTTGAAGTATCCCCGATG-G-----TG-AAAAATCGATGTTTTGGAAATAAAATCGAGGTT
4567366 GGAGTATCCCCTCAGAAATAA
59 GGAGTATCCCCTCAGAAATAA
* * * * * * *
4567387 -TAGGGTTGAAGTATCCCCGATGGTGGAAAATCGATGCTTTGAAAATAAAATAGGGGTTGGGGTA
1 CGA-GGTTGAAGTATCCCCGATGGTGAAAAATCGATGTTTTGGAAATAAAATCGAGGTTGGAGTA
*
4567451 TCTCCTCAGAAATAA
65 TCCCCTCAGAAATAA
* * * * *
4567466 CGAAGTTCAAGTATCCCCAATTGTGAAAAATCGATGTTTTAGAAATAAAAATC-AGGGTTGGAGT
1 CGAGGTTGAAGTATCCCCGATGGTGAAAAATCGATGTTTTGGAAAT-AAAATCGA-GGTTGGAGT
* * *
4567530 ATCCTCTAAAAAATAA
64 ATCCCCTCAGAAATAA
* * **
4567546 CGGGGTTGGAGTATCCCCGATGGTGGGAAATCGATGTTTT
1 CGAGGTTGAAGTATCCCCGATGGTGAAAAATCGATGTTTT
4567586 TTTAAATAAA
Statistics
Matches: 290, Mismatches: 55, Indels: 35
0.76 0.14 0.09
Matches are distributed among these distances:
78 7 0.02
79 153 0.53
80 63 0.22
84 3 0.01
85 55 0.19
86 9 0.03
ACGTcount: A:0.34, C:0.13, G:0.24, T:0.28
Consensus pattern (79 bp):
CGAGGTTGAAGTATCCCCGATGGTGAAAAATCGATGTTTTGGAAATAAAATCGAGGTTGGAGTAT
CCCCTCAGAAATAA
Found at i:4567435 original size:164 final size:157
Alignment explanation
Indices: 4567153--4567581 Score: 384
Period size: 164 Copynumber: 2.7 Consensus size: 157
4567143 TCGAGGTTGG
* * * * * *
4567153 AGTATCCCCGATGGTGAAAAAT-TAGTGTTTTGGAAATAAAACCGAGGTTAGAGTATCCCCTC-G
1 AGTATCCCCAATTGTGAAAAATCGA-TATTTTGGAAATAAAATCGAGGTTGGAGTATCCCCTCAG
* ** ** * * * * **
4567216 AAAATAACGAGGTTGGAGTATCATCGATTTTGAAAAATCAATGTTTTGGAAAT-AAATCCTGGGT
65 -AAATAAAG-GGTTGGAGTATCCCCGATGGTGGAAAATCGATGCTTTGAAAATAAAAT-AGGGGT
** *
4567280 TGGAGTATAC-CCTCAGAAATAACGGGGTTGA
127 TGGAGTAT-CTCCTCAGAAATAACGAAGTTCA
* * *
4567311 AGTAT-CTCTATGTGAATATTGAAAAAATCGATATTTTGGAAATAAAATCGAGATTGGAGTATCC
1 AGTATCCCCAAT-TG-----TG-AAAAATCGATATTTTGGAAATAAAATCGAGGTTGGAGTATCC
*
4567375 CCTCAGAAATAATAGGGTTGAAGTATCCCCGATGGTGGAAAATCGATGCTTTGAAAATAAAATAG
59 CCTCAGAAATAA-AGGGTTGGAGTATCCCCGATGGTGGAAAATCGATGCTTTGAAAATAAAATAG
*
4567440 GGGTTGGGGTATCTCCTCAGAAATAACGAAGTTCA
123 GGGTTGGAGTATCTCCTCAGAAATAACGAAGTTCA
* * * *
4567475 AGTATCCCCAATTGTGAAAAATCGATGTTTTAGAAATAAAAATC-AGGGTTGGAGTATCCTCTAA
1 AGTATCCCCAATTGTGAAAAATCGATATTTTGGAAAT-AAAATCGA-GGTTGGAGTATCCCCTCA
* * *
4567539 AAAATAACGGGGTTGGAGTATCCCCGATGGTGGGAAATCGATG
64 GAAATAA-AGGGTTGGAGTATCCCCGATGGTGGAAAATCGATG
4567582 TTTTTTTAAA
Statistics
Matches: 220, Mismatches: 36, Indels: 29
0.77 0.13 0.10
Matches are distributed among these distances:
157 4 0.02
158 26 0.12
159 61 0.28
163 3 0.01
164 115 0.52
165 11 0.05
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.28
Consensus pattern (157 bp):
AGTATCCCCAATTGTGAAAAATCGATATTTTGGAAATAAAATCGAGGTTGGAGTATCCCCTCAGA
AATAAAGGGTTGGAGTATCCCCGATGGTGGAAAATCGATGCTTTGAAAATAAAATAGGGGTTGGA
GTATCTCCTCAGAAATAACGAAGTTCA
Found at i:4570037 original size:50 final size:51
Alignment explanation
Indices: 4569926--4570043 Score: 143
Period size: 50 Copynumber: 2.4 Consensus size: 51
4569916 AAAAATGCCT
* * *
4569926 GAATGTATCGATACATTGAGAAATGTATCGATACATTTGGGTAAAACCCAA
1 GAATGTATCGATACAATGAGAAATGTATCGATACATCTAGGTAAAACCCAA
* **
4569977 -ATTGTATCGATACAATGA-AGAATGTATCGATACATCTAGGTAAAA-TGAA
1 GAATGTATCGATACAATGAGA-AATGTATCGATACATCTAGGTAAAACCCAA
*
4570026 GAATGTGTCGATACAATG
1 GAATGTATCGATACAATG
4570044 TGTAAGCTCA
Statistics
Matches: 57, Mismatches: 8, Indels: 5
0.81 0.11 0.07
Matches are distributed among these distances:
49 3 0.05
50 54 0.95
ACGTcount: A:0.40, C:0.12, G:0.20, T:0.28
Consensus pattern (51 bp):
GAATGTATCGATACAATGAGAAATGTATCGATACATCTAGGTAAAACCCAA
Found at i:4570496 original size:33 final size:32
Alignment explanation
Indices: 4570443--4570505 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 32
4570433 TGGGACAATG
4570443 TATCGATACAATTCTTCATGTATCGATACATTA
1 TATCGATACAATTC-TCATGTATCGATACATTA
*
4570476 TATCGATACAATATGC-CATGTATTGATACA
1 TATCGATACAAT-T-CTCATGTATCGATACA
4570506 AATAGTGGTA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
33 25 0.93
34 1 0.04
35 1 0.04
ACGTcount: A:0.35, C:0.17, G:0.11, T:0.37
Consensus pattern (32 bp):
TATCGATACAATTCTCATGTATCGATACATTA
Found at i:4570582 original size:18 final size:20
Alignment explanation
Indices: 4570535--4570588 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
4570525 CTGCGAGTTT
* *
4570535 CATGCATCGATACAATTATG
1 CATGTATCGATACAATAATG
*
4570555 TATGTATCGATACAATAAT-
1 CATGTATCGATACAATAATG
4570574 CAT-TATCGATACAAT
1 CATGTATCGATACAAT
4570589 GTATCGATGC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
18 12 0.40
19 2 0.07
20 16 0.53
ACGTcount: A:0.39, C:0.17, G:0.11, T:0.33
Consensus pattern (20 bp):
CATGTATCGATACAATAATG
Found at i:4571015 original size:31 final size:32
Alignment explanation
Indices: 4570971--4571032 Score: 90
Period size: 32 Copynumber: 2.0 Consensus size: 32
4570961 CAAGATTTTG
4570971 TCCCCCTTATTGTTA-AAAAAAAAAATCTTTC
1 TCCCCCTTATTGTTATAAAAAAAAAATCTTTC
* * *
4571002 TCCCCTTTTTTGTTATATAAAAAAAATCTTT
1 TCCCCCTTATTGTTATAAAAAAAAAATCTTT
4571033 TTATTTCTTC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 13 0.48
32 14 0.52
ACGTcount: A:0.35, C:0.19, G:0.03, T:0.42
Consensus pattern (32 bp):
TCCCCCTTATTGTTATAAAAAAAAAATCTTTC
Found at i:4574917 original size:44 final size:44
Alignment explanation
Indices: 4574854--4574942 Score: 178
Period size: 44 Copynumber: 2.0 Consensus size: 44
4574844 AAAGTTGGCC
4574854 TAATCATTGCTCGATTTATAATATAGCAAGCGATGTTAAATGCT
1 TAATCATTGCTCGATTTATAATATAGCAAGCGATGTTAAATGCT
4574898 TAATCATTGCTCGATTTATAATATAGCAAGCGATGTTAAATGCT
1 TAATCATTGCTCGATTTATAATATAGCAAGCGATGTTAAATGCT
4574942 T
1 T
4574943 CCACCCAAAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.34, C:0.13, G:0.16, T:0.37
Consensus pattern (44 bp):
TAATCATTGCTCGATTTATAATATAGCAAGCGATGTTAAATGCT
Found at i:4578561 original size:19 final size:20
Alignment explanation
Indices: 4578524--4578561 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
4578514 TCCCGTTGCT
4578524 ATGTATCGATACAATTCATA
1 ATGTATCGATACAATTCATA
4578544 ATGTATCGATAC-ATTCAT
1 ATGTATCGATACAATTCAT
4578562 TTGAAATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.37, C:0.16, G:0.11, T:0.37
Consensus pattern (20 bp):
ATGTATCGATACAATTCATA
Found at i:4578710 original size:20 final size:19
Alignment explanation
Indices: 4578683--4578756 Score: 69
Period size: 20 Copynumber: 3.8 Consensus size: 19
4578673 ACTGCTAGTT
4578683 TCATGTATCAATACAATTG-
1 TCATGTATCAATACAA-TGA
* *
4578702 TGTATGTATCGATACAATGA
1 T-CATGTATCAATACAATGA
*
4578722 TCATGTATCAATACAAAGCA
1 TCATGTATCAATACAATG-A
* *
4578742 TAATGTATCGATACA
1 TCATGTATCAATACA
4578757 TCTGGATGTG
Statistics
Matches: 45, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
19 17 0.38
20 28 0.62
ACGTcount: A:0.39, C:0.15, G:0.14, T:0.32
Consensus pattern (19 bp):
TCATGTATCAATACAATGA
Found at i:4579975 original size:41 final size:41
Alignment explanation
Indices: 4579811--4580125 Score: 238
Period size: 41 Copynumber: 7.4 Consensus size: 41
4579801 AAAGAGTACA
* * * * * ***
4579811 TCCTACTCTTCGAGGACAAAGGAAAAAAGAAATAAAATACA
1 TCCTGCTCTTTGAGGACAAAGGGAAAAGGAAATAAAGTGTG
* * *
4579852 TCCTGCTCTTT-ATAGATAAA-GGAAAAGAAAGAAATTAAGTGTG
1 TCCTGCTCTTTGA-GGACAAAGGGAAAAG---GAAATAAAGTGTG
* * * * *
4579895 TCCTACTTTTTGACGACAAAGAAGAAAAGGAAATAAAGTGTT
1 TCCTGCTCTTTGAGGACAAAG-GGAAAAGGAAATAAAGTGTG
* **
4579937 TCCTGCTCTTTGAGGACAAAGGGAAAAGAAAATAAAGTGCA
1 TCCTGCTCTTTGAGGACAAAGGGAAAAGGAAATAAAGTGTG
* *
4579978 TCTTGCTCTTTAAGGACAAAGGGAAAAGGAAATAAAGTGTG
1 TCCTGCTCTTTGAGGACAAAGGGAAAAGGAAATAAAGTGTG
* *
4580019 TCCTGCTCTTTGAGGACAAAAGGGTAAAGAAGGAAATGAAGTGCG
1 TCCTGCTCTTTGAGGAC-AAAGGG--AA-AAGGAAATAAAGTGTG
* * * *
4580064 TTCTACTCTTTGAGGACAAAAGGGAAAACAAGGAAATGAAGTGCG
1 TCCTGCTCTTTGAGGAC-AAAGGG--AA-AAGGAAATAAAGTGTG
* *
4580109 TCATGCTCTTTAAGGAC
1 TCCTGCTCTTTGAGGAC
4580126 TAAAAGTGCT
Statistics
Matches: 221, Mismatches: 42, Indels: 18
0.79 0.15 0.06
Matches are distributed among these distances:
40 6 0.03
41 81 0.37
42 35 0.16
43 22 0.10
44 3 0.01
45 74 0.33
ACGTcount: A:0.41, C:0.13, G:0.23, T:0.23
Consensus pattern (41 bp):
TCCTGCTCTTTGAGGACAAAGGGAAAAGGAAATAAAGTGTG
Found at i:4580226 original size:62 final size:62
Alignment explanation
Indices: 4580106--4580807 Score: 834
Period size: 62 Copynumber: 11.4 Consensus size: 62
4580096 GAAATGAAGT
* * * * * * *
4580106 GCGTCATGCTCTTTAAGGACTAAA-AGTGCTACTAACTCATGTGGGCTTTGAAATGAAAAAG
1 GCGTCCTGCTCTTTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAG
* *
4580167 GCGTCCTACTCTTTGAGGACTAAAGGGTGCCATCAACTCGTGTGGGCTTTGAAAAGAAAAAG
1 GCGTCCTGCTCTTTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAG
* * * *
4580229 GCGTCCTGCACTTTGAAGACTAAAGGTTGCCACTAACTCGTGTGGGCTTTGAAAAGAAAAAG
1 GCGTCCTGCTCTTTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAG
* * * * *
4580291 GCATCATGCTCTTTAAGGACTAAAGGGTGCCACCAACTCATGTGGGCTTTG-AAA-AAAAAT
1 GCGTCCTGCTCTTTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAG
* *
4580351 GC-TCCTGCTTTTTGAGGACTAAA-GGTGCCACCAACTCTTGTGGGC-TTGAAAAGAAAAAG
1 GCGTCCTGCTCTTTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAG
* * * * * * * *
4580410 GTGCCCTACTCTTTAAGCACTAAAGGGATGCCACCAACTTGTGTGGGCTTCGAAAAGAAAAAT
1 GCGTCCTGCTCTTTGAGGACTAAAGGG-TGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAG
* *
4580473 GCGTCTTGC-CTTTTGAGGACTAAAGGGTGCCACTAACTCGTGTGGGCTTTGAAAAGAAATAA-
1 GCGTCCTGCTC-TTTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAA-AAG
* *
4580535 GCATCCTGCTCTTTAAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAG
1 GCGTCCTGCTCTTTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAG
* *
4580597 GCGTCTTGCT-TTTGGAGGACTAAA-GGTGCCACCAACTCGTGCGGGCTTTGAAAAGAAAAAG
1 GCGTCCTGCTCTTT-GAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAG
* * * * * * *
4580658 GTGTTCTGCTCTTTGAGGATTAAA-TGTGCCTCCAACTCGTGTAGGC-TTGAAAAAGGAAAAG
1 GCGTCCTGCTCTTTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTG-AAAAGAAAAAG
* * * * *
4580719 ACGTCCTGCTCTTTGAAGACTAAAGGGTGCCACCAACTCATATGGGCTTTGAAAAGAGAAAG
1 GCGTCCTGCTCTTTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAG
* * *
4580781 GCGTCCTTCTTTTTAAGGACTAAAGGG
1 GCGTCCTGCTCTTTGAGGACTAAAGGG
4580808 CTAAAAAGGG
Statistics
Matches: 543, Mismatches: 82, Indels: 31
0.83 0.12 0.05
Matches are distributed among these distances:
57 3 0.01
58 24 0.04
59 24 0.04
60 26 0.05
61 130 0.24
62 299 0.55
63 37 0.07
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.25
Consensus pattern (62 bp):
GCGTCCTGCTCTTTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAG
Found at i:4580550 original size:244 final size:244
Alignment explanation
Indices: 4580106--4580807 Score: 905
Period size: 244 Copynumber: 2.9 Consensus size: 244
4580096 GAAATGAAGT
* * * * * * * *
4580106 GCGTCATGCTCTTTAAGGACTAAAAGTGCTACTAACTCATGTGGGCTTTGAAATGAAAAAGGCGT
1 GCGTCCTGCTTTTTGAGGACTAAAGGTGCCACCAACTCATGTGGGCTTTGAAAAGAAAAAGGTGT
*
4580171 CCTACTCTTTGAGGACTAAAGGGTGCCATCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCT
66 CCTACTCTTTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGC-TTGAAAAGAAAAA-GCGTCCT
* *
4580236 GCAC-TTTGAAGACTAAAGGTTGCCACTAACTCGTGTGGGCTTTGAAAAGAAAAAGGCATCATGC
129 GC-CTTTTGAAGACTAAAGGGTGCCACTAACTCGTGTGGGCTTTGAAAAGAAAAA-GCATCCTGC
*
4580300 TCTTTAAGGACTAAAGGGTGCCACCAACTCATGTGGGCTTTG-AAA-AAAAAT
192 TCTTTAAGGACTAAAGGGTGCCACCAACTCATGTGGGCTTTGAAAAGAAAAAG
* *
4580351 GC-TCCTGCTTTTTGAGGACTAAAGGTGCCACCAACTCTTGTGGGC-TTGAAAAGAAAAAGGTGC
1 GCGTCCTGCTTTTTGAGGACTAAAGGTGCCACCAACTCATGTGGGCTTTGAAAAGAAAAAGGTGT
* * * *
4580414 CCTACTCTTTAAGCACTAAAGGGATGCCACCAACTTGTGTGGGCTTCGAAAAGAAAAATGCGTCT
66 CCTACTCTTTGAGGACTAAAGGG-TGCCACCAACTCGTGTGGGCTT-GAAAAGAAAAA-GCGTCC
*
4580479 TGCCTTTTGAGGACTAAAGGGTGCCACTAACTCGTGTGGGCTTTGAAAAGAAATAAGCATCCTGC
128 TGCCTTTTGAAGACTAAAGGGTGCCACTAACTCGTGTGGGCTTTGAAAAGAAA-AAGCATCCTGC
*
4580544 TCTTTAAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAG
192 TCTTTAAGGACTAAAGGGTGCCACCAACTCATGTGGGCTTTGAAAAGAAAAAG
* * * *
4580597 GCGTCTTGCTTTTGGAGGACTAAAGGTGCCACCAACTCGTGCGGGCTTTGAAAAGAAAAAGGTGT
1 GCGTCCTGCTTTTTGAGGACTAAAGGTGCCACCAACTCATGTGGGCTTTGAAAAGAAAAAGGTGT
* * * * * * *
4580662 TCTGCTCTTTGAGGATTAAA-TGTGCCTCCAACTCGTGTAGGCTTGAAAAAGGAAAAGACGTCCT
66 CCTACTCTTTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTG-AAAAGAAAAAG-CGTCCT
* * * * * *
4580726 G-CTCTTTGAAGACTAAAGGGTGCCACCAACTCATATGGGCTTTGAAAAGAGAAAGGCGTCCTTC
129 GCCT-TTTGAAGACTAAAGGGTGCCACTAACTCGTGTGGGCTTTGAAAAGA-AAAAGCATCCTGC
*
4580790 TTTTTAAGGACTAAAGGG
192 TCTTTAAGGACTAAAGGG
4580808 CTAAAAAGGG
Statistics
Matches: 400, Mismatches: 45, Indels: 23
0.85 0.10 0.05
Matches are distributed among these distances:
243 39 0.10
244 168 0.42
245 11 0.03
246 108 0.27
247 42 0.10
248 32 0.08
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.25
Consensus pattern (244 bp):
GCGTCCTGCTTTTTGAGGACTAAAGGTGCCACCAACTCATGTGGGCTTTGAAAAGAAAAAGGTGT
CCTACTCTTTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTGAAAAGAAAAAGCGTCCTGC
CTTTTGAAGACTAAAGGGTGCCACTAACTCGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTT
TAAGGACTAAAGGGTGCCACCAACTCATGTGGGCTTTGAAAAGAAAAAG
Found at i:4581271 original size:13 final size:13
Alignment explanation
Indices: 4581253--4581279 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
4581243 ACATGCTGCT
4581253 TTGTATCGATACA
1 TTGTATCGATACA
4581266 TTGTATCGATACA
1 TTGTATCGATACA
4581279 T
1 T
4581280 GTTCATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:4581276 original size:33 final size:32
Alignment explanation
Indices: 4581234--4581298 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 32
4581224 CACACCCAAA
*
4581234 TGTATCGATACATGCTGCTTTGTATCGATACAT
1 TGTATCGATACATG-TGCATTGTATCGATACAT
*
4581267 TGTATCGATACATGTTCATTGTATCGATACAT
1 TGTATCGATACATGTGCATTGTATCGATACAT
4581299 GGACAAATTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 16 0.53
33 14 0.47
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.40
Consensus pattern (32 bp):
TGTATCGATACATGTGCATTGTATCGATACAT
Found at i:4581310 original size:21 final size:19
Alignment explanation
Indices: 4581263--4581320 Score: 80
Period size: 19 Copynumber: 2.9 Consensus size: 19
4581253 TTGTATCGAT
*
4581263 ACATTGTATCGATACATGT
1 ACATTGTATCGATACATGG
*
4581282 TCATTGTATCGATACATGG
1 ACATTGTATCGATACATGG
4581301 ACAAATTGTATCGATACATG
1 AC--ATTGTATCGATACATG
4581321 AAACTGGCAG
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
19 18 0.53
21 16 0.47
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Consensus pattern (19 bp):
ACATTGTATCGATACATGG
Found at i:4584085 original size:19 final size:18
Alignment explanation
Indices: 4584060--4584124 Score: 77
Period size: 19 Copynumber: 3.8 Consensus size: 18
4584050 ATTTCAACGA
4584060 TTTGTATCGATACATAAG
1 TTTGTATCGATACATAAG
4584078 TGTTGTATCGATAC--AA-
1 T-TTGTATCGATACATAAG
4584094 --TGTATCGATACATAAG
1 TTTGTATCGATACATAAG
4584110 TTTTGTATCGATACA
1 -TTTGTATCGATACA
4584125 ATGTATCGCT
Statistics
Matches: 40, Mismatches: 0, Indels: 13
0.75 0.00 0.25
Matches are distributed among these distances:
13 11 0.28
15 2 0.05
17 2 0.05
18 1 0.03
19 24 0.60
ACGTcount: A:0.32, C:0.12, G:0.17, T:0.38
Consensus pattern (18 bp):
TTTGTATCGATACATAAG
Found at i:4584098 original size:32 final size:32
Alignment explanation
Indices: 4584062--4584132 Score: 133
Period size: 32 Copynumber: 2.2 Consensus size: 32
4584052 TTCAACGATT
4584062 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
*
4584094 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
4584126 TGTATCG
1 TGTATCG
4584133 CTATGAAGCT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTATCGATACAA
Found at i:4584099 original size:13 final size:13
Alignment explanation
Indices: 4584081--4584105 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4584071 ACATAAGTGT
4584081 TGTATCGATACAA
1 TGTATCGATACAA
4584094 TGTATCGATACA
1 TGTATCGATACA
4584106 TAAGTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:4584254 original size:52 final size:52
Alignment explanation
Indices: 4584197--4584326 Score: 224
Period size: 52 Copynumber: 2.5 Consensus size: 52
4584187 CACTGATCTT
* *
4584197 TGTATCGATACGTGCAGGTAAATTTGCCCAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
*
4584249 TGTATCGATACATACAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
4584301 TGTATCGATACATGCAGGCGAAATTT
1 TGTATCGATACATGCAGGC-AAATTT
4584327 CATATTTCGG
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
52 67 0.92
53 6 0.08
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
Found at i:4585214 original size:20 final size:20
Alignment explanation
Indices: 4585177--4585215 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
4585167 ACAACCTTGA
*
4585177 TCATGCATTTTTACCATGTT
1 TCATGCATTTATACCATGTT
*
4585197 TCATGCATTTATAGCATGT
1 TCATGCATTTATACCATGT
4585216 CCAGCACCTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.23, C:0.18, G:0.13, T:0.46
Consensus pattern (20 bp):
TCATGCATTTATACCATGTT
Found at i:4591228 original size:13 final size:13
Alignment explanation
Indices: 4591210--4591238 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
4591200 ACAACATTCC
4591210 TTGTATCGATACA
1 TTGTATCGATACA
4591223 TTGTATCGATACA
1 TTGTATCGATACA
4591236 TTG
1 TTG
4591239 GGTACTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:4593629 original size:33 final size:32
Alignment explanation
Indices: 4593587--4593651 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 32
4593577 CACAACCAGA
*
4593587 TGTATCGATACATGCTGCTTTGTATCCATACAT
1 TGTATCGATACATG-TGCATTGTATCCATACAT
* *
4593620 TGTATCGATACATGTTCATTGTATCGATACAT
1 TGTATCGATACATGTGCATTGTATCCATACAT
4593652 GGACAAATTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 15 0.52
33 14 0.48
ACGTcount: A:0.26, C:0.18, G:0.15, T:0.40
Consensus pattern (32 bp):
TGTATCGATACATGTGCATTGTATCCATACAT
Found at i:4593663 original size:21 final size:19
Alignment explanation
Indices: 4593616--4593670 Score: 74
Period size: 19 Copynumber: 2.8 Consensus size: 19
4593606 TTGTATCCAT
*
4593616 ACATTGTATCGATACATGT
1 ACATTGTATCGATACATGG
*
4593635 TCATTGTATCGATACATGG
1 ACATTGTATCGATACATGG
4593654 ACAAATTGTATCGATAC
1 AC--ATTGTATCGATAC
4593671 GTGAAACTGG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
19 18 0.58
21 13 0.42
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (19 bp):
ACATTGTATCGATACATGG
Found at i:4593742 original size:13 final size:13
Alignment explanation
Indices: 4593724--4593782 Score: 58
Period size: 13 Copynumber: 5.0 Consensus size: 13
4593714 ATGGTACAAA
4593724 TGTATCGATACAT
1 TGTATCGATACAT
*
4593737 TGTATCAATACA-
1 TGTATCGATACAT
*
4593749 TG-A-AGA-A-A-
1 TGTATCGATACAT
4593757 TGTATCGATACAT
1 TGTATCGATACAT
4593770 TGTATCGATACAT
1 TGTATCGATACAT
4593783 GAAGAAATGT
Statistics
Matches: 37, Mismatches: 4, Indels: 10
0.73 0.08 0.20
Matches are distributed among these distances:
8 3 0.08
9 2 0.05
10 3 0.08
11 2 0.05
12 3 0.08
13 24 0.65
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.34
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:4593763 original size:33 final size:33
Alignment explanation
Indices: 4593702--4593802 Score: 166
Period size: 33 Copynumber: 3.0 Consensus size: 33
4593692 CTATCACTAT
* *
4593702 TTGTATCGATACATGGTACAAATGTATCGATACA
1 TTGTATCGATACAT-GAAGAAATGTATCGATACA
*
4593736 TTGTATCAATACATGAAGAAATGTATCGATACA
1 TTGTATCGATACATGAAGAAATGTATCGATACA
4593769 TTGTATCGATACATGAAGAAATGTATCGATACA
1 TTGTATCGATACATGAAGAAATGTATCGATACA
4593802 T
1 T
4593803 AGATTGTAAC
Statistics
Matches: 63, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
33 50 0.79
34 13 0.21
ACGTcount: A:0.39, C:0.13, G:0.17, T:0.32
Consensus pattern (33 bp):
TTGTATCGATACATGAAGAAATGTATCGATACA
Found at i:4593795 original size:20 final size:20
Alignment explanation
Indices: 4593737--4593802 Score: 74
Period size: 20 Copynumber: 3.6 Consensus size: 20
4593727 ATCGATACAT
*
4593737 TGTATCAATACATGAAGAAA
1 TGTATCGATACATGAAGAAA
4593757 TGTATCGATACAT-------
1 TGTATCGATACATGAAGAAA
4593770 TGTATCGATACATGAAGAAA
1 TGTATCGATACATGAAGAAA
4593790 TGTATCGATACAT
1 TGTATCGATACAT
4593803 AGATTGTAAC
Statistics
Matches: 38, Mismatches: 1, Indels: 14
0.72 0.02 0.26
Matches are distributed among these distances:
13 13 0.34
20 25 0.66
ACGTcount: A:0.41, C:0.12, G:0.17, T:0.30
Consensus pattern (20 bp):
TGTATCGATACATGAAGAAA
Found at i:4602718 original size:1 final size:1
Alignment explanation
Indices: 4602712--4602844 Score: 131
Period size: 1 Copynumber: 133.0 Consensus size: 1
4602702 CGTCCTCCAC
* * * * ** *
4602712 AAAAAAAAAAAAAAAAAAAAAAACAAAACAAAAAAAAACAAAACAAAAAAAAAAGCAAAAACAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * * * * *
4602777 AAAAAAACAAAGAAAAAAACACAAAAAAAAAAACAAAAAAACAAAAAAAAACAAAAAAAAACAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
4602842 AAA
1 AAA
4602845 GGGTCTGGAT
Statistics
Matches: 103, Mismatches: 29, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
1 103 1.00
ACGTcount: A:0.89, C:0.10, G:0.02, T:0.00
Consensus pattern (1 bp):
A
Found at i:4609743 original size:22 final size:22
Alignment explanation
Indices: 4609718--4609770 Score: 88
Period size: 22 Copynumber: 2.4 Consensus size: 22
4609708 TTAGTAAAAA
4609718 AGAAAATAACAGACAAATTTAC
1 AGAAAATAACAGACAAATTTAC
*
4609740 AGAAAATAACAGATAAATTTAC
1 AGAAAATAACAGACAAATTTAC
*
4609762 ACAAAATAA
1 AGAAAATAA
4609771 ATGCACAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.62, C:0.11, G:0.08, T:0.19
Consensus pattern (22 bp):
AGAAAATAACAGACAAATTTAC
Found at i:4610156 original size:79 final size:79
Alignment explanation
Indices: 4610029--4610184 Score: 188
Period size: 79 Copynumber: 2.0 Consensus size: 79
4610019 GATAAAAAAC
* * * * * *
4610029 GGGGTTGGAGTATCCCTTTAGAAATAATAAGGTTGAAGCATCCTCGATTGTGGAAAATCGGTGTT
1 GGGGTTGGAGTATCCCTTGAGAAATAACAAGGTTGAAGCATCCCCGATTATGAAAAATCAGTGTT
* *
4610094 TTGGAAATAAAATT
66 CTAGAAATAAAATT
* * * *
4610108 GGGGTTGGAGTATCCCCTTGA-AAATAACGAGGTTGGAGTATCCCCGATTATGAAAAATTAGTGT
1 GGGGTTGGAGTAT-CCCTTGAGAAATAACAAGGTTGAAGCATCCCCGATTATGAAAAATCAGTGT
4610172 TCTAGAAATAAAA
65 TCTAGAAATAAAA
4610185 CCAGCGTTAA
Statistics
Matches: 64, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
79 58 0.91
80 6 0.09
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.29
Consensus pattern (79 bp):
GGGGTTGGAGTATCCCTTGAGAAATAACAAGGTTGAAGCATCCCCGATTATGAAAAATCAGTGTT
CTAGAAATAAAATT
Found at i:4610275 original size:51 final size:50
Alignment explanation
Indices: 4610138--4610302 Score: 168
Period size: 51 Copynumber: 3.2 Consensus size: 50
4610128 AAAATAACGA
** * * * *
4610138 GGTTGGAGTATCCCCGATTATGAAAAATTAGTGTTCTAGAAATAAAACCAG
1 GGTTGGAGTATCCCCGATGGTGAAAAATCAATGTTTTGGAAATAAAA-CAG
* ** *
4610189 CGTTAAAGTATCCCCGATGGTGGAAAATCAATGTTTTGGAAATAAAACTAG
1 GGTTGGAGTATCCCCGATGGTGAAAAATCAATGTTTTGGAAATAAAAC-AG
* * * * *
4610240 GGTTGGAGTATCCCCTATGGTGAAAAATCGATGTTTTGAAAATATAACCG
1 GGTTGGAGTATCCCCGATGGTGAAAAATCAATGTTTTGGAAATAAAACAG
4610290 GGCTTGGAGTATC
1 GG-TTGGAGTATC
4610303 TCTTCGAAAA
Statistics
Matches: 93, Mismatches: 19, Indels: 4
0.80 0.16 0.03
Matches are distributed among these distances:
50 4 0.04
51 89 0.96
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (50 bp):
GGTTGGAGTATCCCCGATGGTGAAAAATCAATGTTTTGGAAATAAAACAG
Found at i:4610376 original size:79 final size:77
Alignment explanation
Indices: 4610239--4610523 Score: 236
Period size: 79 Copynumber: 3.6 Consensus size: 77
4610229 AATAAAACTA
* * * * * * **
4610239 GGGTTGGAGTATCCCCTATGGTGAAAAATCGATGTTTTGAAAATATAA-CCGGGCTTGGAGTATC
1 GGGTTAGAGTAT-CCCGATGATGGAAAATCGATGTTTTGGAAATAAAATTTGGG-TTGGAGTATC
*
4610303 TCTTCGAAAATAATG
64 TCTTC-AAAATAACG
* *
4610318 GGGTTAAAGTATCCTCGATGATGGAAAATCGATGCTTTGGAAATAAAA-TTGAGGTTGGAGTAT-
1 GGGTTAGAGTATCC-CGATGATGGAAAATCGATGTTTTGGAAATAAAATTTG-GGTTGGAGTATC
*
4610381 TCCCTCATAAATAACG
64 T-CTTCA-AAATAACG
* * * * * ***
4610397 GGGTTGGAGTATCCCCAATTATCGAAAATC-AGTGTTTTAGAAATAAAAATTTGGGTCATAGTAT
1 GGGTTAGAGTAT-CCCGATGATGGAAAATCGA-TGTTTTGGAAAT-AAAATTTGGGTTGGAGTAT
* *
4610461 CCCTTTAAAAATAACG
63 CTC-TTCAAAATAACG
*
4610477 GGGTTAGAGTATCCCGATGGTGGAAAATCGATGTTTTGGAAATAAAA
1 GGGTTAGAGTATCCCGATGATGGAAAATCGATGTTTTGGAAATAAAA
4610524 ACATCGATGA
Statistics
Matches: 164, Mismatches: 31, Indels: 23
0.75 0.14 0.11
Matches are distributed among these distances:
78 9 0.05
79 113 0.69
80 37 0.23
81 5 0.03
ACGTcount: A:0.34, C:0.13, G:0.24, T:0.30
Consensus pattern (77 bp):
GGGTTAGAGTATCCCGATGATGGAAAATCGATGTTTTGGAAATAAAATTTGGGTTGGAGTATCTC
TTCAAAATAACG
Found at i:4622595 original size:8 final size:7
Alignment explanation
Indices: 4622585--4622660 Score: 75
Period size: 7 Copynumber: 10.3 Consensus size: 7
4622575 GAAACTCAAG
4622585 AAGAAAA
1 AAGAAAA
4622592 GAAGAAAAA
1 -AAG-AAAA
*
4622601 AAGAATGA
1 AAGAA-AA
4622609 AAGAAAA
1 AAGAAAA
4622616 AA-AATCAA
1 AAGAA--AA
4622624 AA-AAAA
1 AAGAAAA
4622630 AAGAAAA
1 AAGAAAA
4622637 AAGAAAAA
1 AAG-AAAA
4622645 AAGAAAA
1 AAGAAAA
4622652 AAGAAAA
1 AAGAAAA
4622659 AA
1 AA
4622661 AGTGTCTAAA
Statistics
Matches: 60, Mismatches: 2, Indels: 13
0.80 0.03 0.17
Matches are distributed among these distances:
6 6 0.10
7 25 0.42
8 25 0.42
9 4 0.07
ACGTcount: A:0.83, C:0.01, G:0.13, T:0.03
Consensus pattern (7 bp):
AAGAAAA
Found at i:4622661 original size:8 final size:8
Alignment explanation
Indices: 4622585--4622662 Score: 76
Period size: 8 Copynumber: 10.4 Consensus size: 8
4622575 GAAACTCAAG
*
4622585 AAGAAAAG
1 AAGAAAAA
4622593 AAGAAAAA
1 AAGAAAAA
**
4622601 AAGAATGA
1 AAGAAAAA
4622609 AAG-AAAA
1 AAGAAAAA
**
4622616 AA-AATCA
1 AAGAAAAA
4622623 AA-AAAAA
1 AAGAAAAA
4622630 AAG-AAAA
1 AAGAAAAA
4622637 AAGAAAAA
1 AAGAAAAA
4622645 AAG-AAAA
1 AAGAAAAA
4622652 AAGAAAAA
1 AAGAAAAA
4622660 AAG
1 AAG
4622663 TGTCTAAATG
Statistics
Matches: 57, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
7 27 0.47
8 30 0.53
ACGTcount: A:0.82, C:0.01, G:0.14, T:0.03
Consensus pattern (8 bp):
AAGAAAAA
Found at i:4622661 original size:15 final size:15
Alignment explanation
Indices: 4622585--4622662 Score: 97
Period size: 15 Copynumber: 5.2 Consensus size: 15
4622575 GAAACTCAAG
4622585 AAGAAAAGAAGAAAAA
1 AAGAAAA-AAGAAAAA
*
4622601 AAGAATGAAAGAAAAA
1 AAGAA-AAAAGAAAAA
**
4622617 AA-ATCAAA-AAAAA
1 AAGAAAAAAGAAAAA
4622630 AAGAAAAAAGAAAAA
1 AAGAAAAAAGAAAAA
4622645 AAGAAAAAAGAAAAA
1 AAGAAAAAAGAAAAA
4622660 AAG
1 AAG
4622663 TGTCTAAATG
Statistics
Matches: 54, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
13 7 0.13
14 7 0.13
15 24 0.44
16 15 0.28
17 1 0.02
ACGTcount: A:0.82, C:0.01, G:0.14, T:0.03
Consensus pattern (15 bp):
AAGAAAAAAGAAAAA
Found at i:4624255 original size:34 final size:34
Alignment explanation
Indices: 4624217--4624337 Score: 122
Period size: 34 Copynumber: 3.6 Consensus size: 34
4624207 GGTGGTAACT
*
4624217 TTTTCCACCAAAAGCCCACAAGTTAGTGGCATCC
1 TTTTCCTCCAAAAGCCCACAAGTTAGTGGCATCC
* * * *
4624251 TTTTCCTTCAAAAACCCACACAAGTCAATGGCA-CC
1 TTTTCC-TCCAAAAGCC-CACAAGTTAGTGGCATCC
***
4624286 TTTT--TTTTAAAGCCCACAAGTTAGTGGCATCC
1 TTTTCCTCCAAAAGCCCACAAGTTAGTGGCATCC
*
4624318 TTTTCCTTCAAAAGCCCACA
1 TTTTCCTCCAAAAGCCCACA
4624338 CAAGTCCGTG
Statistics
Matches: 69, Mismatches: 13, Indels: 10
0.75 0.14 0.11
Matches are distributed among these distances:
31 13 0.19
32 12 0.17
34 18 0.26
35 13 0.19
36 13 0.19
ACGTcount: A:0.30, C:0.31, G:0.12, T:0.28
Consensus pattern (34 bp):
TTTTCCTCCAAAAGCCCACAAGTTAGTGGCATCC
Found at i:4624283 original size:36 final size:36
Alignment explanation
Indices: 4624233--4624350 Score: 129
Period size: 36 Copynumber: 3.4 Consensus size: 36
4624223 ACCAAAAGCC
*
4624233 CACAAGTTAGTGGCATCCTTTTCCTTCAAAAACCCA
1 CACAAGTCAGTGGCATCCTTTTCCTTCAAAAACCCA
* ** *
4624269 CACAAGTCAATGGCA-CCTTTT--TT-TTAAAGCC-
1 CACAAGTCAGTGGCATCCTTTTCCTTCAAAAACCCA
* *
4624300 CACAAGTTAGTGGCATCCTTTTCCTTCAAAAGCCCA
1 CACAAGTCAGTGGCATCCTTTTCCTTCAAAAACCCA
*
4624336 CACAAGTCCGTGGCA
1 CACAAGTCAGTGGCA
4624351 CTCTTTTTTT
Statistics
Matches: 64, Mismatches: 13, Indels: 10
0.74 0.15 0.11
Matches are distributed among these distances:
31 13 0.20
32 11 0.17
33 2 0.03
34 2 0.03
35 10 0.16
36 26 0.41
ACGTcount: A:0.29, C:0.30, G:0.14, T:0.27
Consensus pattern (36 bp):
CACAAGTCAGTGGCATCCTTTTCCTTCAAAAACCCA
Found at i:4624301 original size:67 final size:67
Alignment explanation
Indices: 4624227--4624390 Score: 240
Period size: 67 Copynumber: 2.4 Consensus size: 67
4624217 TTTTCCACCA
4624227 AAAGCCCACAAGTTAGTGGCATCCTTTTCCTTCAAAAACCCACACAAGTCAATGGCAC-CTTTTT
1 AAAGCCCACAAGTTAGTGGCATCCTTTTCCTTCAAAAACCCACACAAGTCAATGGCACTC-TTTT
4624291 TTT
65 TTT
* **
4624294 AAAGCCCACAAGTTAGTGGCATCCTTTTCCTTCAAAAGCCCACACAAGTCCGTGGCACTCTTTTT
1 AAAGCCCACAAGTTAGTGGCATCCTTTTCCTTCAAAAACCCACACAAGTCAATGGCACTCTTTTT
4624359 TT
66 TT
* * *
4624361 AAAGCCTACACAAGTTGGTGGTAACCTTTT
1 AAAGCC--CACAAGTTAGTGGCATCCTTTT
4624391 TTCAAAGCCT
Statistics
Matches: 88, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
67 68 0.77
68 1 0.01
69 19 0.22
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.30
Consensus pattern (67 bp):
AAAGCCCACAAGTTAGTGGCATCCTTTTCCTTCAAAAACCCACACAAGTCAATGGCACTCTTTTT
TT
Found at i:4624357 original size:36 final size:34
Alignment explanation
Indices: 4624225--4624337 Score: 133
Period size: 31 Copynumber: 3.4 Consensus size: 34
4624215 CTTTTTCCAC
*
4624225 CAAAAGCCCACAAGTTAGTGGCATCCTTTTCCTT
1 CAAAAGCCCACAAGTCAGTGGCATCCTTTTCCTT
* *
4624259 CAAAAACCCACACAAGTCAATGGCA-CCTTTT--TT
1 C-AAAAGCC-CACAAGTCAGTGGCATCCTTTTCCTT
** *
4624292 TTAAAGCCCACAAGTTAGTGGCATCCTTTTCCTT
1 CAAAAGCCCACAAGTCAGTGGCATCCTTTTCCTT
4624326 CAAAAGCCCACA
1 CAAAAGCCCACA
4624338 CAAGTCCGTG
Statistics
Matches: 64, Mismatches: 10, Indels: 10
0.76 0.12 0.12
Matches are distributed among these distances:
31 13 0.20
32 11 0.17
33 2 0.03
34 13 0.20
35 12 0.19
36 13 0.20
ACGTcount: A:0.31, C:0.30, G:0.12, T:0.27
Consensus pattern (34 bp):
CAAAAGCCCACAAGTCAGTGGCATCCTTTTCCTT
Found at i:4624395 original size:67 final size:66
Alignment explanation
Indices: 4624227--4624467 Score: 237
Period size: 67 Copynumber: 3.7 Consensus size: 66
4624217 TTTTCCACCA
* * *
4624227 AAAGCC-CACAAGTTAGTGGCATCCTTTTCCTTCAAAAACCCACACAAGTCAATGGCACCTTTTT
1 AAAGCCACACAAGTTAGTGGCAACCTTTT-CTTCAAAAGCCCACACAAGTCAGTGGCACC-TTTT
4624291 TTT
64 TTT
* *
4624294 AAAGCC-CACAAGTTAGTGGCATCCTTTTCCTTCAAAAGCCCACACAAGTCCGTGGCACTCTTTT
1 AAAGCCACACAAGTTAGTGGCAACCTTTT-CTTCAAAAGCCCACACAAGTCAGTGGCAC-CTTTT
4624358 TTT
64 TTT
* * * * * *
4624361 AAAGCCTACACAAGTTGGTGGTAACCTTTT-TTC-AAAGCCTACAAAAGTCGGTGGCAACC-TTC
1 AAAGCC-ACACAAGTTAGTGGCAACCTTTTCTTCAAAAGCCCACACAAGTCAGTGGC-ACCTTTT
*
4624423 TTC
64 TTT
* *
4624426 AAAGCCCACACAAGTTGGTGGCAACC--CTC-TCAAAAGCCCACA
1 AAAG-CCACACAAGTTAGTGGCAACCTTTTCTTCAAAAGCCCACA
4624468 TAGTTGTTGG
Statistics
Matches: 153, Mismatches: 14, Indels: 17
0.83 0.08 0.09
Matches are distributed among these distances:
63 3 0.02
64 9 0.06
65 26 0.17
66 22 0.14
67 73 0.48
68 1 0.01
69 19 0.12
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (66 bp):
AAAGCCACACAAGTTAGTGGCAACCTTTTCTTCAAAAGCCCACACAAGTCAGTGGCACCTTTTTT
T
Found at i:4624446 original size:32 final size:33
Alignment explanation
Indices: 4624147--4624467 Score: 160
Period size: 33 Copynumber: 9.6 Consensus size: 33
4624137 CTAATAGAGA
* * *
4624147 AACCTTTC-TCACAAGCCTACATAGGTTGGTGGC
1 AACCTTTCTTCA-AAGCCCACACAAGTTGGTGGC
** * *
4624180 AACC-TTCTTCAAAAGCCTGCATAAGTTGGTGGT
1 AACCTTTCTTC-AAAGCCCACACAAGTTGGTGGC
* ** *
4624213 AACTTTTTCCACCAAAAG-CC-CACAAGTTAGTGGC
1 AAC-CTTT-CTTC-AAAGCCCACACAAGTTGGTGGC
* * ***
4624247 ATCCTTTTCCTTCAAAAACCCACACAAGTCAATGGC
1 AACC-TTT-CTTC-AAAGCCCACACAAGTTGGTGGC
* * *
4624283 -ACCTTTTTTTTAAAG-CC-CACAAGTTAGTGGC
1 AACC-TTTCTTCAAAGCCCACACAAGTTGGTGGC
* **
4624314 ATCCTTTTCCTTCAAAAGCCCACACAAGTCCGTGGC
1 AACC-TTT-CTTC-AAAGCCCACACAAGTTGGTGGC
* * * *
4624350 -ACTCTTTTTTTAAAGCCTACACAAGTTGGTGGT
1 AAC-CTTTCTTCAAAGCCCACACAAGTTGGTGGC
* * * *
4624383 AACCTTTTTTCAAAGCCTACAAAAGTCGGTGGC
1 AACCTTTCTTCAAAGCCCACACAAGTTGGTGGC
4624416 AACC-TTCTTCAAAGCCCACACAAGTTGGTGGC
1 AACCTTTCTTCAAAGCCCACACAAGTTGGTGGC
*
4624448 AACC-CTC-TCAAAAGCCCACA
1 AACCTTTCTTC-AAAGCCCACA
4624468 TAGTTGTTGG
Statistics
Matches: 228, Mismatches: 44, Indels: 33
0.75 0.14 0.11
Matches are distributed among these distances:
31 14 0.06
32 51 0.22
33 80 0.35
34 34 0.15
35 17 0.07
36 32 0.14
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (33 bp):
AACCTTTCTTCAAAGCCCACACAAGTTGGTGGC
Found at i:4624479 original size:31 final size:32
Alignment explanation
Indices: 4624361--4624467 Score: 117
Period size: 32 Copynumber: 3.3 Consensus size: 32
4624351 CTCTTTTTTT
* * * *
4624361 AAAGCCTACACAAGTTGGTGGTAACCTTTTTTC
1 AAAGCCCACACAAGTTGGTGGCAACC-CTCTTC
* * * *
4624394 AAAGCCTACAAAAGTCGGTGGCAACCTTCTTC
1 AAAGCCCACACAAGTTGGTGGCAACCCTCTTC
4624426 AAAGCCCACACAAGTTGGTGGCAACCCTC-TC
1 AAAGCCCACACAAGTTGGTGGCAACCCTCTTC
4624457 AAAAGCCCACA
1 -AAAGCCCACA
4624468 TAGTTGTTGG
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
31 2 0.03
32 40 0.62
33 23 0.35
ACGTcount: A:0.32, C:0.29, G:0.18, T:0.21
Consensus pattern (32 bp):
AAAGCCCACACAAGTTGGTGGCAACCCTCTTC
Found at i:4624781 original size:53 final size:53
Alignment explanation
Indices: 4624650--4625134 Score: 313
Period size: 53 Copynumber: 9.1 Consensus size: 53
4624640 AACACATTCT
* * * * * * ** *
4624650 TCATCTTTAAGTCCAATGTCACTAGCCTTGAATTAGCTCA-TTGGTACCTTCA
1 TCATCTTTAAGTCTAATGTCGCTGGCCTTGAATCAGCACATTTGGCATTTTTA
* * * * ** * *
4624702 CCATTTTTAAGACTAATATCATTGGCCATGAATCAGCATA-TTGGCATTTTTTA
1 TCATCTTTAAGTCTAATGTCGCTGGCCTTGAATCAGCACATTTGGCA-TTTTTA
* * * *
4624755 TCATCTTTAAGTCCAATGTCGCTGGCCTTAAATCAACACATTTGGCATTCTTA
1 TCATCTTTAAGTCTAATGTCGCTGGCCTTGAATCAGCACATTTGGCATTTTTA
* * * * *
4624808 TCATCTCTAAGTTTGATGGCAG-TGGCCTTGAATCAGCACATTTGGCATTCTCT-
1 TCATCTTTAAGTCTAATGTC-GCTGGCCTTGAATCAGCACATTTGGCATT-TTTA
* * * * ** *
4624861 TCATCTTTATGTCTAATGTTGTTGGCCTTGAATCAGCACA-TTGGTACCTTCA
1 TCATCTTTAAGTCTAATGTCGCTGGCCTTGAATCAGCACATTTGGCATTTTTA
* * * ** * * * *
4624913 TCATCTTTAAGACCAATATCATTGG-TTGTGAATTAGCATA-TTGACATTTTTTTATCA
1 TCATCTTTAAGTCTAATGTCGCTGGCCT-TGAATCAGCACATTTGGCA---TTTT-T-A
* * * *
4624970 TCATCTTTAAGTCTAATGTCGCTAGCCTTGAATTAGCACATTTGGCATTCTTG
1 TCATCTTTAAGTCTAATGTCGCTGGCCTTGAATCAGCACATTTGGCATTTTTA
* * *
4625023 TCATCTTTAAGTCCAATGGCGCTGGCCTTGAATCAGCACATTTGGCATTCTTA
1 TCATCTTTAAGTCTAATGTCGCTGGCCTTGAATCAGCACATTTGGCATTTTTA
* * * * * **
4625076 CCATCTTTGAGTCTAATGTCTCTAGCCTTGAA-CTAGTACA-TTGGCACCTTTA
1 TCATCTTTAAGTCTAATGTCGCTGGCCTTGAATC-AGCACATTTGGCATTTTTA
4625128 TCATCTT
1 TCATCTT
4625135 CAGATTTAAG
Statistics
Matches: 330, Mismatches: 88, Indels: 30
0.74 0.20 0.07
Matches are distributed among these distances:
51 2 0.01
52 89 0.27
53 188 0.57
54 9 0.03
55 5 0.02
57 31 0.09
58 6 0.02
ACGTcount: A:0.25, C:0.22, G:0.15, T:0.38
Consensus pattern (53 bp):
TCATCTTTAAGTCTAATGTCGCTGGCCTTGAATCAGCACATTTGGCATTTTTA
Found at i:4624971 original size:106 final size:104
Alignment explanation
Indices: 4624624--4625134 Score: 350
Period size: 106 Copynumber: 4.8 Consensus size: 104
4624614 TATTGCTGGA
** ** * * * * * *
4624624 CTTGAATCAGCATATTAACACATTCT-TCATCTTTAAGTCCAATGTCACTAGCCTTGAATTAGCT
1 CTTGAATCAGCATATTGGCATTTTTTATCATCTTTAAGTCTAATGTCGCTGGCCTTGAATCAGCA
* *
4624688 CATTGGTACCTTCACCATTTTTAAGACTAATATCATTGG
66 CATTGGTACCTTCATCATCTTTAAGACTAATATCATTGG
* * * *
4624727 CCATGAATCAGCATATTGGCATTTTTTATCATCTTTAAGTCCAATGTCGCTGGCCTTAAATCAAC
1 -CTTGAATCAGCATATTGGCATTTTTTATCATCTTTAAGTCTAATGTCGCTGGCCTTGAATCAGC
* * * ** * ** *
4624792 ACATTTGGCATTCTT-ATCATCTCTAAGTTTGATGGCAGTGG
65 ACA-TTGGTA-CCTTCATCATCTTTAAGACTAATATCATTGG
* * * * * *
4624833 CCTTGAATCAGCACATTTGGCATTCTCT-TCATCTTTATGTCTAATGTTGTTGGCCTTGAATCAG
1 -CTTGAATCAGCATA-TTGGCATTTTTTATCATCTTTAAGTCTAATGTCGCTGGCCTTGAATCAG
*
4624897 CACATTGGTACCTTCATCATCTTTAAGACCAATATCATTGG
64 CACATTGGTACCTTCATCATCTTTAAGACTAATATCATTGG
* * * *
4624938 TTGTGAATTAGCATATTGACATTTTTTTATCATCATCTTTAAGTCTAATGTCGCTAGCCTTGAAT
1 CT-TGAATCAGCATATTGGCA--TTTTT-T-ATCATCTTTAAGTCTAATGTCGCTGGCCTTGAAT
* * * * * * ** **
4625003 TAGCACATTTGGCATTCTT-GTCATCTTTAAGTCCAATGGCGCTGG
61 CAGCACA-TTGGTA-CCTTCATCATCTTTAAGACTAATATCATTGG
* * * * * *
4625048 CCTTGAATCAGCACATTTGGCA-TTCTTACCATCTTTGAGTCTAATGTCTCTAGCCTTGAA-CTA
1 -CTTGAATCAGCATA-TTGGCATTTTTTATCATCTTTAAGTCTAATGTCGCTGGCCTTGAATC-A
* * *
4625111 GTACATTGGCACCTTTATCATCTT
63 GCACATTGGTACCTTCATCATCTT
4625135 CAGATTTAAG
Statistics
Matches: 316, Mismatches: 74, Indels: 33
0.75 0.17 0.08
Matches are distributed among these distances:
104 32 0.10
105 80 0.25
106 107 0.34
107 15 0.05
108 3 0.01
109 35 0.11
110 35 0.11
111 9 0.03
ACGTcount: A:0.25, C:0.22, G:0.15, T:0.38
Consensus pattern (104 bp):
CTTGAATCAGCATATTGGCATTTTTTATCATCTTTAAGTCTAATGTCGCTGGCCTTGAATCAGCA
CATTGGTACCTTCATCATCTTTAAGACTAATATCATTGG
Done.