Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold412
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4645160
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
File 9 of 32
Found at i:1351661 original size:109 final size:109
Alignment explanation
Indices: 1351463--1352002 Score: 454
Period size: 109 Copynumber: 5.0 Consensus size: 109
1351453 AATTTAATTA
* * * * *
1351463 CATTAATTACGTAATATTTTGGTACCAAAAAATTGACCCCGAAATAAATCATCATCTAAAGTCGT
1 CATTAATTACGTAA-ATTCTGGTACCAAAAAATTAACCTCGAAATAAGTCATCATCTAAAGTCAT
* * * *
1351528 AAAGCAGCGTACGAATACCTTTTATATAGGATAATTCATTTATTG
65 AAAGAAGCGTACGAACACCCTTTATATAGGATAATTCATTTTTTG
* * * * *
1351573 CA-TAATTACATAATATTCTGGTACCAAAAGATTAACCTCAAAAT-AGATCATCATCTAGAGTCG
1 CATTAATTACGTAA-ATTCTGGTACCAAAAAATTAACCTCGAAATAAG-TCATCATCTAAAGTCA
* * *
1351636 TAAAGAAGTGTACGAACACCCTTTATA-A-GATAATTTATTTTCTG
64 TAAAGAAGCGTACGAACACCCTTTATATAGGATAATTCATTTTTTG
* ** * * ** *
1351680 CATTAATTACGTAAATT-TGG-GCACAAAAAGATTGGCCTTGAAATAAGCCATTGTCTAGAGTCA
1 CATTAATTACGTAAATTCTGGTAC-CAAAAA-ATTAACCTCGAAATAAGTCATCATCTAAAGTCA
** *
1351743 TAAA-ACAGCGTACGAATGCCCTTTATATAGGATAATTTATTTTTTG
64 TAAAGA-AGCGTACGAACACCCTTTATATAGGATAATTCATTTTTTG
* *
1351789 CATTAATTACGTAAATTC-GAGCACCAAAAAATTGATCC-CGAAATAAGTCATCATCTAAAGTCA
1 CATTAATTACGTAAATTCTG-GTACCAAAAAATT-AACCTCGAAATAAGTCATCATCTAAAGTCA
* ** **
1351852 TAAAG-CGACGTTTGAACACCCTTTATATAATATAATTCATTTTTTG
64 TAAAGAAG-CGTACGAACACCCTTTATATAGGATAATTCATTTTTTG
* * ** * ** ** *
1351898 CATTAATTACGTAAATTCAGGTACCAAAATATTGGCATCGAAAT-AGATCATTGTCTAGGGCCAT
1 CATTAATTACGTAAATTCTGGTACCAAAAAATTAACCTCGAAATAAG-TCATCATCTAAAGTCAT
** * * * *
1351962 AAAGTGGCGCATGAACGCCCTTTATATAAGATAATTCATTT
65 AAAGAAGCGTACGAACACCCTTTATATAGGATAATTCATTT
1352003 CTCGTGTAAA
Statistics
Matches: 351, Mismatches: 61, Indels: 37
0.78 0.14 0.08
Matches are distributed among these distances:
105 1 0.00
106 9 0.03
107 62 0.18
108 19 0.05
109 246 0.70
110 13 0.04
111 1 0.00
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.32
Consensus pattern (109 bp):
CATTAATTACGTAAATTCTGGTACCAAAAAATTAACCTCGAAATAAGTCATCATCTAAAGTCATA
AAGAAGCGTACGAACACCCTTTATATAGGATAATTCATTTTTTG
Found at i:1351842 original size:216 final size:217
Alignment explanation
Indices: 1351463--1351914 Score: 515
Period size: 216 Copynumber: 2.1 Consensus size: 217
1351453 AATTTAATTA
* * * *
1351463 CATTAATTACGTAATATTTTGGTACCAAAAAATTGACCCCGAAATAAATCATCATCTAAAGTCGT
1 CATTAATTACGTAA-ATTTGGGCACCAAAAAATTGACCCCGAAATAAACCATCATCTAAAGTCAT
* *
1351528 AAAGCAGCGTACGAATACCTTTTATATAGGATAATTCATTTATTGCATAATTACATAATATTCTG
65 AAAACAGCGTACGAATACCCTTTATATAGGATAATTCATTTATTGCATAATTACATAATATTCTG
* * * *
1351593 GTACCAAAAGATTAACCTCAAAATAGATCATCATCTAGAGTCGTAAA-GAAGTGTACGAACACCC
130 GCACCAAAAAATTAACCTCAAAATAGATCATCATCTAAAGTCATAAACGAAGT-T-CGAACACCC
*
1351657 -TT-TATAAGATAATTTATTTTCTG
193 TTTATATAAGATAATTCATTTTCTG
* ** * ** *
1351680 CATTAATTACGTAAATTTGGGCA-CAAAAAGATTGGCCTTGAAATAAGCCATTGTCTAGAGTCAT
1 CATTAATTACGTAAATTTGGGCACCAAAAA-ATTGACCCCGAAATAAACCATCATCTAAAGTCAT
* * * *
1351744 AAAACAGCGTACGAATGCCCTTTATATAGGATAATTTATTTTTTGCATTAATTACGTAA-ATTC-
65 AAAACAGCGTACGAATACCCTTTATATAGGATAATTCATTTATTGCA-TAATTACATAATATTCT
* * * *
1351807 GAGCACCAAAAAATTGATCC-CGAAATA-AGTCATCATCTAAAGTCATAAAGCGACGTTTGAACA
129 G-GCACCAAAAAATT-AACCTCAAAATAGA-TCATCATCTAAAGTCATAAA-CGAAGTTCGAACA
* *
1351870 CCCTTTATATAATATAATTCATTTTTTG
190 CCCTTTATATAAGATAATTCATTTTCTG
1351898 CATTAATTACGTAAATT
1 CATTAATTACGTAAATT
1351915 CAGGTACCAA
Statistics
Matches: 198, Mismatches: 28, Indels: 17
0.81 0.12 0.07
Matches are distributed among these distances:
215 8 0.04
216 121 0.61
217 30 0.15
218 39 0.20
ACGTcount: A:0.38, C:0.16, G:0.13, T:0.33
Consensus pattern (217 bp):
CATTAATTACGTAAATTTGGGCACCAAAAAATTGACCCCGAAATAAACCATCATCTAAAGTCATA
AAACAGCGTACGAATACCCTTTATATAGGATAATTCATTTATTGCATAATTACATAATATTCTGG
CACCAAAAAATTAACCTCAAAATAGATCATCATCTAAAGTCATAAACGAAGTTCGAACACCCTTT
ATATAAGATAATTCATTTTCTG
Found at i:1356900 original size:67 final size:68
Alignment explanation
Indices: 1356788--1356918 Score: 167
Period size: 67 Copynumber: 1.9 Consensus size: 68
1356778 TGGCATTATT
*
1356788 AGATTAATCATTATCATCAAGTAGATCTATTCATGAAGAAGATTAAGTTTGATTAGTAACAATTA
1 AGATTAATCATTATCATCAAGTAGATCTATTCATGAAGAAGATTAAGTTTGATTAGTAAAAATTA
1356853 GTA
66 GTA
* * * * * * *
1356856 AGATTAATCA-TATTATCGAGTATATCTGTTCATGGATGGA-ATTAAGTTTGGTTAGTAAAAATT
1 AGATTAATCATTATCATCAAGTAGATCTATTCAT-GAAGAAGATTAAGTTTGATTAGTAAAAATT
1356919 TACTTGTTCA
Statistics
Matches: 54, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
67 40 0.74
68 14 0.26
ACGTcount: A:0.38, C:0.08, G:0.17, T:0.37
Consensus pattern (68 bp):
AGATTAATCATTATCATCAAGTAGATCTATTCATGAAGAAGATTAAGTTTGATTAGTAAAAATTA
GTA
Found at i:1359981 original size:21 final size:23
Alignment explanation
Indices: 1359944--1359990 Score: 55
Period size: 21 Copynumber: 2.1 Consensus size: 23
1359934 ATTTATTATT
1359944 TATAAAAATAATAT-AAA-TTTA
1 TATAAAAATAATATAAAATTTTA
*
1359965 TATAATAAAT-ATTTAAAATTTTA
1 TATAA-AAATAATATAAAATTTTA
1359988 TAT
1 TAT
1359991 TCATATTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
21 8 0.36
22 7 0.32
23 7 0.32
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (23 bp):
TATAAAAATAATATAAAATTTTA
Found at i:1360010 original size:23 final size:22
Alignment explanation
Indices: 1359944--1360020 Score: 57
Period size: 24 Copynumber: 3.4 Consensus size: 22
1359934 ATTTATTATT
* *
1359944 TATAA-AAATAATATAAATTTA
1 TATAATAAATATTTTAAATTTA
*
1359965 TATAATAAATATTTAAAATTTTA
1 TATAATAAATATTTTAAA-TTTA
* **
1359988 TATTCATATTTATTTTAAATTTA
1 TA-TAATAAATATTTTAAATTTA
1360011 TTATTAATAA
1 -TA-TAATAA
1360021 TAATTATATT
Statistics
Matches: 43, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
21 5 0.12
22 9 0.21
23 10 0.23
24 19 0.44
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (22 bp):
TATAATAAATATTTTAAATTTA
Found at i:1365077 original size:2 final size:2
Alignment explanation
Indices: 1365070--1365113 Score: 79
Period size: 2 Copynumber: 22.0 Consensus size: 2
1365060 TATTTATATG
*
1365070 CA CA CA CA CA CA CT CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1365112 CA
1 CA
1365114 TATATATATA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.48, C:0.50, G:0.00, T:0.02
Consensus pattern (2 bp):
CA
Found at i:1365118 original size:2 final size:2
Alignment explanation
Indices: 1365113--1365138 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
1365103 ACACACACAC
1365113 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
1365139 TACTCTTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1366428 original size:14 final size:15
Alignment explanation
Indices: 1366405--1366436 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
1366395 TAAAATATTT
1366405 TAAATAAAAAATAAA
1 TAAATAAAAAATAAA
1366420 TAAAT-AAAAATAAA
1 TAAATAAAAAATAAA
1366434 TAA
1 TAA
1366437 TTGATAAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 12 0.71
15 5 0.29
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (15 bp):
TAAATAAAAAATAAA
Found at i:1366432 original size:10 final size:11
Alignment explanation
Indices: 1366405--1366437 Score: 50
Period size: 10 Copynumber: 3.1 Consensus size: 11
1366395 TAAAATATTT
*
1366405 TAAATAAAAAA
1 TAAATAAATAA
1366416 TAAATAAATAA
1 TAAATAAATAA
1366427 -AAATAAATAA
1 TAAATAAATAA
1366437 T
1 T
1366438 TGATAAAAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
10 10 0.50
11 10 0.50
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (11 bp):
TAAATAAATAA
Found at i:1368428 original size:15 final size:15
Alignment explanation
Indices: 1368408--1368454 Score: 69
Period size: 15 Copynumber: 3.2 Consensus size: 15
1368398 TTTTTTATTT
*
1368408 AAAAAATTTAAATTC
1 AAAAAAATTAAATTC
*
1368423 AAAAAAATTGAATT-
1 AAAAAAATTAAATTC
1368437 AAAAAAATTAAATTC
1 AAAAAAATTAAATTC
1368452 AAA
1 AAA
1368455 GCAAAAATTG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
14 13 0.46
15 15 0.54
ACGTcount: A:0.66, C:0.04, G:0.02, T:0.28
Consensus pattern (15 bp):
AAAAAAATTAAATTC
Found at i:1368440 original size:14 final size:14
Alignment explanation
Indices: 1368406--1368450 Score: 63
Period size: 14 Copynumber: 3.1 Consensus size: 14
1368396 ACTTTTTTAT
*
1368406 TTAAAAAATTTAAA
1 TTAAAAAAATTAAA
*
1368420 TTCAAAAAAATTGAA
1 TT-AAAAAAATTAAA
1368435 TTAAAAAAATTAAA
1 TTAAAAAAATTAAA
1368449 TT
1 TT
1368451 CAAAGCAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
14 15 0.56
15 12 0.44
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.33
Consensus pattern (14 bp):
TTAAAAAAATTAAA
Found at i:1368952 original size:23 final size:23
Alignment explanation
Indices: 1368925--1368968 Score: 72
Period size: 23 Copynumber: 1.9 Consensus size: 23
1368915 CACAATAACC
1368925 TTTAAAAAATAACA-TTTAATAAA
1 TTTAAAAAATAA-ATTTTAATAAA
1368948 TTTAAAAAATAAATTTTAATA
1 TTTAAAAAATAAATTTTAATA
1368969 TTTACGATCT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 1 0.05
23 19 0.95
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (23 bp):
TTTAAAAAATAAATTTTAATAAA
Found at i:1372203 original size:11 final size:11
Alignment explanation
Indices: 1372177--1372302 Score: 64
Period size: 11 Copynumber: 12.3 Consensus size: 11
1372167 TAAGAAAAAT
*
1372177 ATATAATATAAA
1 ATATTATAT-AA
1372189 ATATGT-TATAA
1 ATAT-TATATAA
1372200 ATATTATATAA
1 ATATTATATAA
1372211 ATA-TATA-AA
1 ATATTATATAA
*
1372220 ATTTTATATAA
1 ATATTATATAA
*
1372231 TATGATT-TATTA
1 -AT-ATTATATAA
*
1372243 ATATTTTA-AA
1 ATATTATATAA
1372253 AT-TTA-ATAA
1 ATATTATATAA
1372262 A-A-TATAT-A
1 ATATTATATAA
1372270 ATATT-T-TAA
1 ATATTATATAA
*
1372279 ATATAAT-TATA
1 ATATTATATA-A
1372290 ATA-TATATAA
1 ATATTATATAA
1372300 ATA
1 ATA
1372303 AATAAATTTA
Statistics
Matches: 90, Mismatches: 8, Indels: 34
0.68 0.06 0.26
Matches are distributed among these distances:
8 6 0.07
9 18 0.20
10 25 0.28
11 26 0.29
12 13 0.14
13 2 0.02
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (11 bp):
ATATTATATAA
Found at i:1372230 original size:43 final size:43
Alignment explanation
Indices: 1372182--1372264 Score: 98
Period size: 43 Copynumber: 1.9 Consensus size: 43
1372172 AAAATATATA
1372182 ATATAAAAT-ATGTTATAAATATTATATAAATAT-ATAAAATTTT
1 ATATAAAATGAT-TTATAAATATTATA-AAATATAATAAAATTTT
* * * *
1372225 ATATAATATGATTTATTAATATTTTAAAATTTAATAAAAT
1 ATATAAAATGATTTATAAATATTATAAAATATAATAAAAT
1372265 ATATAATATT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
42 5 0.15
43 27 0.79
44 2 0.06
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (43 bp):
ATATAAAATGATTTATAAATATTATAAAATATAATAAAATTTT
Found at i:1372273 original size:27 final size:27
Alignment explanation
Indices: 1372181--1372296 Score: 80
Period size: 27 Copynumber: 4.3 Consensus size: 27
1372171 AAAAATATAT
* *
1372181 AATATAAAATATGTTATAAATATTA-TATA
1 AATATATAATAT-TT-TAAATATAATTA-A
* *
1372210 AATATATAAAATTTT--ATATAA-TAT
1 AATATATAATATTTTAAATATAATTAA
* * *
1372234 GATTTATTAATATTTTAAAATTTAA-TAA
1 AATATA-TAATATTTT-AAATATAATTAA
*
1372262 AATATATAATATTTTAAATATAATTAT
1 AATATATAATATTTTAAATATAATTAA
1372289 AATATATA
1 AATATATA
1372297 TAAATAAATA
Statistics
Matches: 69, Mismatches: 13, Indels: 12
0.73 0.14 0.13
Matches are distributed among these distances:
24 4 0.06
25 15 0.22
26 7 0.10
27 20 0.29
28 13 0.19
29 10 0.14
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.46
Consensus pattern (27 bp):
AATATATAATATTTTAAATATAATTAA
Found at i:1372277 original size:20 final size:20
Alignment explanation
Indices: 1372257--1372304 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 20
1372247 TTTAAAATTT
1372257 AATAAAATATATAATATTTTA
1 AATAAAAT-TATAATATTTTA
* *
1372278 AATATAATTATAATATATATA
1 AATAAAATTATAATAT-TTTA
1372299 AATAAA
1 AATAAA
1372305 TAAATTTATT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
20 8 0.35
21 15 0.65
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (20 bp):
AATAAAATTATAATATTTTA
Found at i:1372605 original size:19 final size:17
Alignment explanation
Indices: 1372573--1372648 Score: 54
Period size: 17 Copynumber: 4.6 Consensus size: 17
1372563 TAACACATTG
1372573 TATAAATATAA-ATATAA
1 TATAAATATAATATA-AA
1372590 TATAAAT-T-AT-TAAA
1 TATAAATATAATATAAA
* *
1372604 TATATAA-AAAATTTAAA
1 TATA-AATATAATATAAA
* *
1372621 AATAAATATAATATACA
1 TATAAATATAATATAAA
1372638 TATTAAATATA
1 TA-TAAATATA
1372649 TTTATATTAA
Statistics
Matches: 46, Mismatches: 6, Indels: 13
0.71 0.09 0.20
Matches are distributed among these distances:
14 6 0.13
15 5 0.11
16 5 0.11
17 22 0.48
18 8 0.17
ACGTcount: A:0.62, C:0.01, G:0.00, T:0.37
Consensus pattern (17 bp):
TATAAATATAATATAAA
Found at i:1372649 original size:9 final size:9
Alignment explanation
Indices: 1372581--1372688 Score: 64
Period size: 9 Copynumber: 12.0 Consensus size: 9
1372571 TGTATAAATA
1372581 TAAATATAAT
1 TAAATAT-AT
1372591 ATAAAT-TAT
1 -TAAATATAT
1372600 TAAATATAT
1 TAAATATAT
* *
1372609 AAAAAAT-T
1 TAAATATAT
1372617 TAAA-A-A-
1 TAAATATAT
*
1372623 TAAATATAA
1 TAAATATAT
* *
1372632 TATACATAT
1 TAAATATAT
1372641 TAAATATATT
1 TAAATATA-T
* *
1372651 TATATTAAAT
1 TA-AATATAT
1372661 TAAATATAT
1 TAAATATAT
*
1372670 TAATTATATT
1 TAAATATA-T
1372680 TAAATATAT
1 TAAATATAT
1372689 CATATAATTT
Statistics
Matches: 75, Mismatches: 14, Indels: 18
0.70 0.13 0.17
Matches are distributed among these distances:
6 4 0.05
7 2 0.03
8 10 0.13
9 35 0.47
10 15 0.20
11 9 0.12
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.43
Consensus pattern (9 bp):
TAAATATAT
Found at i:1372662 original size:20 final size:20
Alignment explanation
Indices: 1372639--1372688 Score: 68
Period size: 19 Copynumber: 2.5 Consensus size: 20
1372629 TAATATACAT
1372639 ATTAAATATATTTATATTA-A
1 ATTAAATATATTTA-ATTATA
1372659 ATTAAATATA-TTAATTATA
1 ATTAAATATATTTAATTATA
*
1372678 TTTAAATATAT
1 ATTAAATATAT
1372689 CATATAATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
18 4 0.15
19 13 0.48
20 10 0.37
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
ATTAAATATATTTAATTATA
Found at i:1372696 original size:23 final size:22
Alignment explanation
Indices: 1372639--1372697 Score: 61
Period size: 23 Copynumber: 2.7 Consensus size: 22
1372629 TAATATACAT
1372639 ATTAAATATAT--TTATATTAA
1 ATTAAATATATAATTATATTAA
1372659 ATTAAATATATTAATTATATTTAA
1 ATTAAATATA-TAATTATA-TTAA
*
1372683 A-TATATCATATAATT
1 ATTAAAT-ATATAATT
1372698 TTTATTTTAT
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
20 10 0.30
21 1 0.03
23 14 0.42
24 8 0.24
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (22 bp):
ATTAAATATATAATTATATTAA
Found at i:1372721 original size:15 final size:14
Alignment explanation
Indices: 1372695--1372724 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
1372685 ATATCATATA
1372695 ATTTTTATTTTATT
1 ATTTTTATTTTATT
1372709 ATTTTTATATTTATT
1 ATTTTTAT-TTTATT
1372724 A
1 A
1372725 AATATATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (14 bp):
ATTTTTATTTTATT
Found at i:1372734 original size:20 final size:20
Alignment explanation
Indices: 1372638--1372735 Score: 60
Period size: 20 Copynumber: 4.8 Consensus size: 20
1372628 ATAATATACA
1372638 TATTAAATATA-TTTATATT
1 TATTAAATATATTTTATATT
*
1372657 AAATTAAATATATTAATTATATT
1 -TATTAAATATATT--TTATATT
* * *
1372680 TA--AATATATCATATAATTTT
1 TATTAA-ATAT-ATTTTATATT
**
1372700 TATTTTAT-TATTTTTATATT
1 TATTAAATATA-TTTTATATT
1372720 TATTAAATATATTTTA
1 TATTAAATATATTTTA
1372736 CTTAGTATAT
Statistics
Matches: 57, Mismatches: 12, Indels: 18
0.66 0.14 0.21
Matches are distributed among these distances:
19 1 0.02
20 37 0.65
21 9 0.16
22 3 0.05
23 7 0.12
ACGTcount: A:0.42, C:0.01, G:0.00, T:0.57
Consensus pattern (20 bp):
TATTAAATATATTTTATATT
Found at i:1373751 original size:21 final size:22
Alignment explanation
Indices: 1373727--1373777 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
1373717 ACCACATATG
1373727 AATTTTAAACTA-AATTT-ATTT
1 AATTTTAAA-TATAATTTAATTT
* *
1373748 AATTATAAATATTATTTAATTT
1 AATTTTAAATATAATTTAATTT
1373770 AATTTTAA
1 AATTTTAA
1373778 TTATTTTTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
20 2 0.08
21 12 0.48
22 11 0.44
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (22 bp):
AATTTTAAATATAATTTAATTT
Found at i:1373764 original size:17 final size:16
Alignment explanation
Indices: 1373737--1373768 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
1373727 AATTTTAAAC
1373737 TAAATTTATTTAATTA
1 TAAATTTATTTAATTA
1373753 TAAATATTATTTAATT
1 TAAAT-TTATTTAATT
1373769 TAATTTTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
TAAATTTATTTAATTA
Found at i:1373772 original size:22 final size:21
Alignment explanation
Indices: 1373740--1373790 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 21
1373730 TTTAAACTAA
1373740 ATTTATTTAATTATAAATATT
1 ATTTATTTAATTATAAATATT
* *
1373761 ATTTAATTTAATTTTAATTATT
1 ATTT-ATTTAATTATAAATATT
1373783 -TTTATTTA
1 ATTTATTTA
1373791 CACATTCTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
20 5 0.19
21 7 0.26
22 15 0.56
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (21 bp):
ATTTATTTAATTATAAATATT
Found at i:1374440 original size:25 final size:25
Alignment explanation
Indices: 1374384--1374438 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
1374374 AATATTTATA
**
1374384 ATTTTTATTTTAAATTACAATTTTT
1 ATTTTTATTTTAAATTACAATTAAT
*
1374409 ATTTTTATTTTAAATTATAATTAA-
1 ATTTTTATTTTAAATTACAATTAAT
1374433 ATTTTT
1 ATTTTT
1374439 TAATTATATC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
24 6 0.22
25 21 0.78
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.64
Consensus pattern (25 bp):
ATTTTTATTTTAAATTACAATTAAT
Found at i:1375553 original size:43 final size:43
Alignment explanation
Indices: 1375499--1375584 Score: 113
Period size: 43 Copynumber: 2.0 Consensus size: 43
1375489 AAAATTTAAA
*
1375499 TTTTATAATATTTTAT-TTTAT-TAAATTAAATTATTATTATTAT
1 TTTTATAATATTTTATATTTATATAAAAT-AATTATT-TTATTAT
* *
1375542 TTTTATCATATTTTTTATTTATATAAAATAATTATTTTATTAT
1 TTTTATAATATTTTATATTTATATAAAATAATTATTTTATTAT
1375585 AATTTTTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
43 21 0.55
44 12 0.32
45 5 0.13
ACGTcount: A:0.36, C:0.01, G:0.00, T:0.63
Consensus pattern (43 bp):
TTTTATAATATTTTATATTTATATAAAATAATTATTTTATTAT
Found at i:1376119 original size:22 final size:22
Alignment explanation
Indices: 1376108--1376158 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 22
1376098 TTAAAATTAA
*
1376108 ATTT-ATTTAATTATAAATATT
1 ATTTAATTTAATTTTAAATATT
*
1376129 ATTTAATTTAATTTTAATTATT
1 ATTTAATTTAATTTTAAATATT
1376151 -TTT-ATTTA
1 ATTTAATTTA
1376159 TACATTCTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
20 5 0.19
21 7 0.26
22 15 0.56
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (22 bp):
ATTTAATTTAATTTTAAATATT
Found at i:1376130 original size:17 final size:16
Alignment explanation
Indices: 1376105--1376136 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
1376095 ATTTTAAAAT
1376105 TAAATTTATTTAATTA
1 TAAATTTATTTAATTA
1376121 TAAATATTATTTAATT
1 TAAAT-TTATTTAATT
1376137 TAATTTTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
TAAATTTATTTAATTA
Found at i:1376464 original size:9 final size:9
Alignment explanation
Indices: 1376450--1376474 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
1376440 AAATTTAAAT
1376450 TTTATTTTA
1 TTTATTTTA
1376459 TTTATTTTA
1 TTTATTTTA
1376468 TTTATTT
1 TTTATTT
1376475 AAATTTAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (9 bp):
TTTATTTTA
Found at i:1376735 original size:121 final size:121
Alignment explanation
Indices: 1376571--1376819 Score: 349
Period size: 121 Copynumber: 2.1 Consensus size: 121
1376561 AAGCTAAGCC
* * *
1376571 AATTTCATTCTCTTTTCAAACCATTTGAATTCGATGTGAATGTGTCAAAAATAATAAAAATATTA
1 AATTTTATTCTCTTTTCAAACCATTTGAATTCCATATGAATGTGTCAAAAATAATAAAAATATTA
* * * * **
1376636 AATTTAATAATTAATTTAATTTATTTGTATAATTATTTTTAAAAATTT-AGATTTCA
66 AATTTAAGAATAAACTTAATTCATTCATATAATTATTTTTAAAAATTTGAG-TTTCA
*
1376692 AATTTTATTCTCTTTTTAAACCCA-TTGAATTCCATATGAATGTGTCAAAAATAATAAAAATATT
1 AATTTTATTCTCTTTTCAAA-CCATTTGAATTCCATATGAATGTGTCAAAAATAATAAAAATATT
* * *
1376756 AAATTTGAGAATAAACTTAATTCGTTCATATAATTATTTTTAAAAATTTGAGTTTTA
65 AAATTTAAGAATAAACTTAATTCATTCATATAATTATTTTTAAAAATTTGAGTTTCA
1376813 AATTTTA
1 AATTTTA
1376820 ATATTAATAA
Statistics
Matches: 113, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
121 108 0.96
122 5 0.04
ACGTcount: A:0.41, C:0.08, G:0.07, T:0.45
Consensus pattern (121 bp):
AATTTTATTCTCTTTTCAAACCATTTGAATTCCATATGAATGTGTCAAAAATAATAAAAATATTA
AATTTAAGAATAAACTTAATTCATTCATATAATTATTTTTAAAAATTTGAGTTTCA
Found at i:1378356 original size:464 final size:461
Alignment explanation
Indices: 1377528--1378459 Score: 1595
Period size: 464 Copynumber: 2.0 Consensus size: 461
1377518 ATTTCATTGG
1377528 AAATTCATCCTTTCCTATGTTTGAAGATTATTCCCATTACATTTTTTCTTTTCTTGATTACCTCT
1 AAATTCATCCTTTCCTATGTTTGAAGATTATTCCCATTACATTTTTTCTTTTCTTGATTACCTCT
*
1377593 TTTTTTTCCTTATTGAGTAATTAATAATTTTAAAAAATAAGTCATTTTATGATAGTCTCCAAAAA
66 TTTTTTTCCTTATTGAGTAATTAATAATTTTAAAAAATAAGTCATTTTATGACAGTCTCCAAAAA
1377658 GGAAATTTTATAATTTAAATTTAATATTTTCATTTAAAAATTCATATTCGAATGAATAGAAAATG
131 GGAAATTTTATAATTTAAATTTAATATTTTCATTTAAAAATTCATATTCGAATGAATAGAAAATG
*
1377723 TAAATTGTAAAAACTATTTTCTTCGCATAACTCACATTAAATTTACAAGTAATAAGTAAGTTTTT
196 TAAATTATAAAAACTATTTTCTTCGCATAACTCACATTAAATTTACAAGTAATAAGTAAGTTTTT
* * * *
1377788 GAAGAAAATATTAATTATATAACTAAATTAAAGTTTTATTTATTTATATAAAAAGAGGTCATAAC
261 GAAGAAAAAACTAATTAAATAACTAAATTAAA--TATATTTATTTATATAAAAAGAGGTCATAAC
* * *
1377853 TAAAGATAAAAAAACGTAAATTATAAGATGTCAATTTTTTAAAATAACTATCTTAACATATATTA
324 TAAAGATAAAAAAACATAAATTATAAAATATCAATTTTTTAAAATAACTATCTTAACATATATTA
*
1377918 AATTAAACTTCGAATTCAAATTAATAAACTTATTTATATAAAATAAAATTTAATCTAAAATTTAA
389 AATTAAAATTCGAATTCAAATTAATAAACTTATTTATATAAAATAAAATTTAATCTAAAA-TTAA
1377983 AAAATATTA
453 AAAATATTA
1377992 AAATTCATCCTTTCCTATGTTTGAAGATTATTCCCATTACATTTTTTCTTTTCTTGATTACCTC-
1 AAATTCATCCTTTCCTATGTTTGAAGATTATTCCCATTACATTTTTTCTTTTCTTGATTACCTCT
* *
1378056 TTTTTTTCCTTCTTGAGTAATTAATAATTTTAAAAAAATAATTCATTTTATGACAGTCTCCAAAA
66 TTTTTTTCCTTATTGAGTAATTAATAATTTT-AAAAAATAAGTCATTTTATGACAGTCTCCAAAA
*
1378121 AGGAAATTTTATAATTTAAATTTAATATTTTCATTTAAAAATTCGTATTCGAATGAATAGAAAAT
130 AGGAAATTTTATAATTTAAATTTAATATTTTCATTTAAAAATTCATATTCGAATGAATAGAAAAT
*
1378186 GTAAATTATAAAAACTATTTTCTTCGCATAACTCACGTTAAATTTACAAGTAATAAGTAAGTTTT
195 GTAAATTATAAAAACTATTTTCTTCGCATAACTCACATTAAATTTACAAGTAATAAGTAAGTTTT
*
1378251 TCTAAGAAAAAAAACTAATTAAATAACTAAATTAAA-AT-TTTATTTATATAAAAA-AGGTCATT
260 T-GAAG--AAAAAACTAATTAAATAACTAAATTAAATATATTTATTTATATAAAAAGAGGTCA-T
*
1378313 AACTAAAGATAAAAAAAATCATAAATTATAAAATATC-ATTTTTTTAAATAACTATCTTAACATA
321 AACTAAAGAT-AAAAAAA-CATAAATTATAAAATATCAATTTTTTAAAATAACTATCTTAACATA
1378377 TATTAAATTAAAATTCGAATTCAAATTAATAAACTTATTTATATAAAATAAAATTTAATCTAAAA
384 TATTAAATTAAAATTCGAATTCAAATTAATAAACTTATTTATATAAAATAAAATTTAATCTAAAA
1378442 TTAAAAAATATTA
449 TTAAAAAATATTA
1378455 AAATT
1 AAATT
1378460 TAAATCAAAT
Statistics
Matches: 445, Mismatches: 16, Indels: 15
0.93 0.03 0.03
Matches are distributed among these distances:
462 6 0.01
463 75 0.17
464 321 0.72
465 18 0.04
467 25 0.06
ACGTcount: A:0.44, C:0.10, G:0.06, T:0.41
Consensus pattern (461 bp):
AAATTCATCCTTTCCTATGTTTGAAGATTATTCCCATTACATTTTTTCTTTTCTTGATTACCTCT
TTTTTTTCCTTATTGAGTAATTAATAATTTTAAAAAATAAGTCATTTTATGACAGTCTCCAAAAA
GGAAATTTTATAATTTAAATTTAATATTTTCATTTAAAAATTCATATTCGAATGAATAGAAAATG
TAAATTATAAAAACTATTTTCTTCGCATAACTCACATTAAATTTACAAGTAATAAGTAAGTTTTT
GAAGAAAAAACTAATTAAATAACTAAATTAAATATATTTATTTATATAAAAAGAGGTCATAACTA
AAGATAAAAAAACATAAATTATAAAATATCAATTTTTTAAAATAACTATCTTAACATATATTAAA
TTAAAATTCGAATTCAAATTAATAAACTTATTTATATAAAATAAAATTTAATCTAAAATTAAAAA
ATATTA
Found at i:1378478 original size:28 final size:28
Alignment explanation
Indices: 1378413--1378482 Score: 74
Period size: 28 Copynumber: 2.5 Consensus size: 28
1378403 TAATAAACTT
1378413 ATTTATATAAA-A-TAAAATTTAATCTAA
1 ATTTAT-TAAATATTAAAATTTAATCTAA
* **
1378440 AATTAAAAAATATTAAAATTTAAATC-AA
1 ATTTATTAAATATTAAAATTT-AATCTAA
1378468 ATTTATTAAATATTA
1 ATTTATTAAATATTA
1378483 TTTTTATAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
26 3 0.09
27 5 0.15
28 22 0.65
29 4 0.12
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (28 bp):
ATTTATTAAATATTAAAATTTAATCTAA
Found at i:1378494 original size:15 final size:16
Alignment explanation
Indices: 1378469--1378498 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
1378459 TTAAATCAAA
1378469 TTTATTAAATATTATT
1 TTTATTAAATATTATT
1378485 TTTA-TAAATATTAT
1 TTTATTAAATATTAT
1378499 ACAATTAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (16 bp):
TTTATTAAATATTATT
Found at i:1379504 original size:20 final size:20
Alignment explanation
Indices: 1379481--1379521 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
1379471 ATATTATTAA
*
1379481 AATATATAA-ATTATTATTTT
1 AATAT-TAATATTAATATTTT
1379501 AATATTAATATTAATATTTT
1 AATATTAATATTAATATTTT
1379521 A
1 A
1379522 TAAATAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 3 0.16
20 16 0.84
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (20 bp):
AATATTAATATTAATATTTT
Found at i:1380185 original size:2 final size:2
Alignment explanation
Indices: 1380178--1380207 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
1380168 ACATACATAC
1380178 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1380208 TCATATTCCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1382927 original size:21 final size:21
Alignment explanation
Indices: 1382903--1382944 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
1382893 ATTAAATTTA
* *
1382903 AATAAAAAATATATTTTTATT
1 AATAAAAAATAAAATTTTATT
*
1382924 AATAAATAATAAAATTTTATT
1 AATAAAAAATAAAATTTTATT
1382945 TAGAACTCGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (21 bp):
AATAAAAAATAAAATTTTATT
Found at i:1384074 original size:2 final size:2
Alignment explanation
Indices: 1384069--1384099 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
1384059 GTGTTGGATA
1384069 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1384100 TTGACATGTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:1387433 original size:21 final size:21
Alignment explanation
Indices: 1387415--1387472 Score: 65
Period size: 19 Copynumber: 3.0 Consensus size: 21
1387405 AAAAATAATT
*
1387415 AAAATAT-TATATAATATAAA
1 AAAATATAAATATAATATAAA
1387435 AAAATATAAATAT-A-ATAAA
1 AAAATATAAATATAATATAAA
1387454 AAAATA-AAA-ATAATA-AAA
1 AAAATATAAATATAATATAAA
1387472 A
1 A
1387473 TATGATATAA
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
17 2 0.06
18 8 0.24
19 12 0.35
20 8 0.24
21 4 0.12
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (21 bp):
AAAATATAAATATAATATAAA
Found at i:1387437 original size:19 final size:20
Alignment explanation
Indices: 1387423--1387472 Score: 70
Period size: 19 Copynumber: 2.6 Consensus size: 20
1387413 TTAAAATATT
1387423 ATATAATATAAAAAAATATAA
1 ATATAATA-AAAAAAATATAA
1387444 ATATAAT-AAAAAAATA-AA
1 ATATAATAAAAAAAATATAA
1387462 A-ATAATAAAAA
1 ATATAATAAAAA
1387473 TATGATATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
17 5 0.18
18 7 0.25
19 9 0.32
21 7 0.25
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (20 bp):
ATATAATAAAAAAAATATAA
Found at i:1387461 original size:8 final size:9
Alignment explanation
Indices: 1387405--1387474 Score: 65
Period size: 8 Copynumber: 7.8 Consensus size: 9
1387395 AAATGTCATA
1387405 AAAAATAATT
1 AAAAATAA-T
*
1387415 AAAATATTAT
1 AAAA-ATAAT
*
1387425 ATAATATAA-
1 A-AAAATAAT
1387434 AAAAAT-AT
1 AAAAATAAT
*
1387442 AAATATAAT
1 AAAAATAAT
1387451 AAAAA-AAT
1 AAAAATAAT
1387459 AAAAATAAT
1 AAAAATAAT
1387468 AAAAATA
1 AAAAATA
1387475 TGATATAAAA
Statistics
Matches: 49, Mismatches: 6, Indels: 11
0.74 0.09 0.17
Matches are distributed among these distances:
7 1 0.02
8 17 0.35
9 17 0.35
10 9 0.18
11 5 0.10
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (9 bp):
AAAAATAAT
Found at i:1387463 original size:28 final size:29
Alignment explanation
Indices: 1387427--1387490 Score: 85
Period size: 28 Copynumber: 2.2 Consensus size: 29
1387417 AATATTATAT
*
1387427 AATATAAAAAAATATAAATATAATAAAAA
1 AATATAAAAAAATAAAAATATAATAAAAA
* * *
1387456 AATA-AAAATAATAAAAATATGATATAAA
1 AATATAAAAAAATAAAAATATAATAAAAA
1387484 AATATAA
1 AATATAA
1387491 TATGGATAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
28 24 0.80
29 6 0.20
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.25
Consensus pattern (29 bp):
AATATAAAAAAATAAAAATATAATAAAAA
Found at i:1387484 original size:13 final size:13
Alignment explanation
Indices: 1387423--1387493 Score: 62
Period size: 13 Copynumber: 5.7 Consensus size: 13
1387413 TTAAAATATT
1387423 ATATAATAT-AAA
1 ATATAATATAAAA
1387435 A-A-AATAT--AA
1 ATATAATATAAAA
*
1387444 ATATAATAAAAAA
1 ATATAATATAAAA
*
1387457 ATAAAAATAATAAAA
1 AT-ATAAT-ATAAAA
*
1387472 ATATGATATAAAA
1 ATATAATATAAAA
1387485 ATATAATAT
1 ATATAATAT
1387494 GGATAAAATT
Statistics
Matches: 47, Mismatches: 6, Indels: 11
0.73 0.09 0.17
Matches are distributed among these distances:
9 3 0.06
10 6 0.13
11 5 0.11
12 1 0.02
13 18 0.38
14 7 0.15
15 7 0.15
ACGTcount: A:0.70, C:0.00, G:0.01, T:0.28
Consensus pattern (13 bp):
ATATAATATAAAA
Found at i:1388095 original size:17 final size:15
Alignment explanation
Indices: 1388073--1388113 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 15
1388063 ACGTTAATAA
1388073 TTTATATTTTATAAATT
1 TTTATATTTT-TAAA-T
*
1388090 TTTATATATTTAAAT
1 TTTATATTTTTAAAT
1388105 TTTATATTT
1 TTTATATTT
1388114 ATATTATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
15 9 0.41
16 4 0.18
17 9 0.41
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (15 bp):
TTTATATTTTTAAAT
Found at i:1388106 original size:31 final size:31
Alignment explanation
Indices: 1388071--1388144 Score: 82
Period size: 31 Copynumber: 2.4 Consensus size: 31
1388061 ATACGTTAAT
1388071 AATTTATATTTTATA-AATTTTTATATATTTA
1 AATTTATATTTTATATAATTTTTATATA-TTA
* *
1388102 AATTT-TATATTTATATTATTTTTTTATATTA
1 AATTTATAT-TTTATATAATTTTTATATATTA
*
1388133 TA-TTATATTTTA
1 AATTTATATTTTA
1388145 ATTTTTTTTA
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
30 9 0.24
31 18 0.49
32 10 0.27
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (31 bp):
AATTTATATTTTATATAATTTTTATATATTA
Found at i:1388107 original size:15 final size:17
Alignment explanation
Indices: 1388073--1388134 Score: 67
Period size: 17 Copynumber: 3.8 Consensus size: 17
1388063 ACGTTAATAA
*
1388073 TTTATATTTTATAAATT
1 TTTATATATTATAAATT
1388090 TTTATATATT-TAAA-T
1 TTTATATATTATAAATT
*
1388105 TTTATAT-TTATATTATT
1 TTTATATATTATA-AATT
*
1388122 TTTTTATATTATA
1 TTTATATATTATA
1388135 TTATATTTTA
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
14 2 0.05
15 10 0.26
16 5 0.13
17 16 0.42
18 5 0.13
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (17 bp):
TTTATATATTATAAATT
Found at i:1388126 original size:19 final size:19
Alignment explanation
Indices: 1388088--1388143 Score: 66
Period size: 17 Copynumber: 3.2 Consensus size: 19
1388078 ATTTTATAAA
*
1388088 TTTTTATA-TAT-TTAAAT
1 TTTTTATATTATATTATAT
*
1388105 TTTATAT-TTATATTAT-T
1 TTTTTATATTATATTATAT
1388122 TTTTTATATTATATTATAT
1 TTTTTATATTATATTATAT
1388141 TTT
1 TTT
1388144 AATTTTTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
17 16 0.50
18 12 0.38
19 4 0.12
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (19 bp):
TTTTTATATTATATTATAT
Found at i:1388133 original size:18 final size:20
Alignment explanation
Indices: 1388104--1388143 Score: 66
Period size: 19 Copynumber: 2.1 Consensus size: 20
1388094 TATATTTAAA
1388104 TTTTATATTTATATTAT-TT
1 TTTTATATTTATATTATATT
1388123 TTTTATA-TTATATTATATT
1 TTTTATATTTATATTATATT
1388142 TT
1 TT
1388144 AATTTTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 9 0.45
19 11 0.55
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (20 bp):
TTTTATATTTATATTATATT
Found at i:1389819 original size:50 final size:50
Alignment explanation
Indices: 1389765--1389983 Score: 280
Period size: 50 Copynumber: 4.4 Consensus size: 50
1389755 TAATGGAAAA
* * * *
1389765 AGGTGATCATAATTGTTGACGATTCTTCATCAATCTTTAATAATAGAGAG
1 AGGTGATCATAATTGTTGACGATTCTTCACCAATTTTTGACAATAGAGAG
* *
1389815 AGGTGATCATAATTGTTAACGATTCTTCACCAATTTTTGACAATAAAG-G
1 AGGTGATCATAATTGTTGACGATTCTTCACCAATTTTTGACAATAGAGAG
* *
1389864 AAGGTGATCATAATTATTGACGATTCTTCATCAATTTTTGACAATAGAGAG
1 -AGGTGATCATAATTGTTGACGATTCTTCACCAATTTTTGACAATAGAGAG
* * * * *
1389915 AAGTGACCATAATTGTTGATGATTCTTCACCAATTTTTGACAATA-AAAA
1 AGGTGATCATAATTGTTGACGATTCTTCACCAATTTTTGACAATAGAGAG
**
1389964 AAATGATCATAATTGTTGAC
1 AGGTGATCATAATTGTTGAC
1389984 TCTAAGTATA
Statistics
Matches: 147, Mismatches: 20, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
49 20 0.14
50 126 0.86
51 1 0.01
ACGTcount: A:0.36, C:0.13, G:0.16, T:0.35
Consensus pattern (50 bp):
AGGTGATCATAATTGTTGACGATTCTTCACCAATTTTTGACAATAGAGAG
Found at i:1389875 original size:100 final size:99
Alignment explanation
Indices: 1389761--1389983 Score: 338
Period size: 100 Copynumber: 2.2 Consensus size: 99
1389751 TGGATAATGG
* * *
1389761 AAAAAGGTGATCATAATTGTTGACGATTCTTCATCAATCTTTAATAATAGAGAGAGGTGATCATA
1 AAAAAGGTGATCATAATTGTTGACGATTCTTCATCAATCTTTAACAATAGAGAGAAGTGACCATA
1389826 ATTGTTAACGATTCTTCACCAATTTTTGACAATA
66 ATTGTTAACGATTCTTCACCAATTTTTGACAATA
* * * *
1389860 AAGGAAGGTGATCATAATTATTGACGATTCTTCATCAATTTTTGACAATAGAGAGAAGTGACCAT
1 AA-AAAGGTGATCATAATTGTTGACGATTCTTCATCAATCTTTAACAATAGAGAGAAGTGACCAT
* *
1389925 AATTGTTGATGATTCTTCACCAATTTTTGACAATA
65 AATTGTTAACGATTCTTCACCAATTTTTGACAATA
**
1389960 AAAAAAATGATCATAATTGTTGAC
1 AAAAAGGTGATCATAATTGTTGAC
1389984 TCTAAGTATA
Statistics
Matches: 110, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
99 20 0.18
100 90 0.82
ACGTcount: A:0.37, C:0.13, G:0.16, T:0.35
Consensus pattern (99 bp):
AAAAAGGTGATCATAATTGTTGACGATTCTTCATCAATCTTTAACAATAGAGAGAAGTGACCATA
ATTGTTAACGATTCTTCACCAATTTTTGACAATA
Found at i:1392616 original size:2 final size:2
Alignment explanation
Indices: 1392609--1392670 Score: 124
Period size: 2 Copynumber: 31.0 Consensus size: 2
1392599 ACCACGTCCA
1392609 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1392651 AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT
1392671 GCAAACAAGA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 60 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1393941 original size:17 final size:16
Alignment explanation
Indices: 1393895--1393941 Score: 51
Period size: 15 Copynumber: 2.9 Consensus size: 16
1393885 ATACATACAC
1393895 ATAATAAAATTTTATTT
1 ATAAT-AAATTTTATTT
*
1393912 AAAATAAA-TTTATTT
1 ATAATAAATTTTATTT
*
1393927 TTAATAAATTATTAT
1 ATAATAAATT-TTAT
1393942 AATATAATAT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
15 13 0.52
16 4 0.16
17 8 0.32
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (16 bp):
ATAATAAATTTTATTT
Found at i:1395002 original size:14 final size:13
Alignment explanation
Indices: 1394982--1395098 Score: 94
Period size: 14 Copynumber: 8.5 Consensus size: 13
1394972 TAATTTTTTA
1394982 ATATATTTAAAAT
1 ATATATTTAAAAT
1394995 ATTATATTTTAAAAT
1 A-TATA-TTTAAAAT
1395010 ATATATTT-AAAT
1 ATATATTTAAAAT
*
1395022 ATATATTTATATAT
1 ATATATTTA-AAAT
*
1395036 ATATATTTATATAT
1 ATATATTTA-AAAT
* **
1395050 ATATATATATGAT
1 ATATATTTAAAAT
*
1395063 ATAAATGTTAAAAT
1 ATATAT-TTAAAAT
1395077 AGTAAATATTTAAAA-
1 A-T--ATATTTAAAAT
1395092 ATATATT
1 ATATATT
1395099 AATGCATGAT
Statistics
Matches: 87, Mismatches: 9, Indels: 17
0.77 0.08 0.15
Matches are distributed among these distances:
12 17 0.20
13 11 0.13
14 39 0.45
15 11 0.13
16 6 0.07
17 3 0.03
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.48
Consensus pattern (13 bp):
ATATATTTAAAAT
Found at i:1395003 original size:26 final size:26
Alignment explanation
Indices: 1394970--1395044 Score: 82
Period size: 26 Copynumber: 2.8 Consensus size: 26
1394960 ATATAAGTAA
*
1394970 ATTA-ATTTTTTAATATATTTAAAAT
1 ATTATATTTTATAATATATTTAAAAT
* *
1394995 ATTATATTTTAAAATATATATTTAAAT
1 ATTATATTTTATAATATAT-TTAAAAT
1395022 A-TATATTTATATATATATATTTA
1 ATTATATTT-TATA-ATATATTTA
1395045 TATATATATA
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
25 4 0.10
26 19 0.46
27 12 0.29
28 6 0.15
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (26 bp):
ATTATATTTTATAATATATTTAAAAT
Found at i:1395015 original size:2 final size:2
Alignment explanation
Indices: 1395008--1395065 Score: 71
Period size: 2 Copynumber: 28.5 Consensus size: 2
1394998 ATATTTTAAA
* * * *
1395008 AT AT AT AT TT AA AT AT AT AT TT AT AT AT AT AT AT TT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1395050 AT AT AT AT AT GAT AT A
1 AT AT AT AT AT -AT AT A
1395066 AATGTTAAAA
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
2 45 0.96
3 2 0.04
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (2 bp):
AT
Found at i:1395021 original size:12 final size:12
Alignment explanation
Indices: 1394982--1395053 Score: 81
Period size: 12 Copynumber: 5.5 Consensus size: 12
1394972 TAATTTTTTA
1394982 ATATATTTAAAAT
1 ATATATTT-AAAT
1394995 ATTATATTTTAAAAT
1 A-TATA-TTT-AAAT
1395010 ATATATTTAAAT
1 ATATATTTAAAT
1395022 ATATATTTATATAT
1 ATATATTTA-A-AT
*
1395036 ATATATTTATAT
1 ATATATTTAAAT
1395048 ATATAT
1 ATATAT
1395054 ATATATGATA
Statistics
Matches: 54, Mismatches: 1, Indels: 9
0.84 0.02 0.14
Matches are distributed among these distances:
12 21 0.39
13 5 0.09
14 19 0.35
15 9 0.17
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (12 bp):
ATATATTTAAAT
Found at i:1395681 original size:15 final size:14
Alignment explanation
Indices: 1395657--1395695 Score: 51
Period size: 15 Copynumber: 2.7 Consensus size: 14
1395647 GGTATAAAAA
1395657 ATAATATTTTTAAT
1 ATAATATTTTTAAT
*
1395671 ATAATTATTTTTAAA
1 ATAA-TATTTTTAAT
*
1395686 AAAATATTTT
1 ATAATATTTT
1395696 AAGAAATTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
14 10 0.45
15 12 0.55
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (14 bp):
ATAATATTTTTAAT
Found at i:1396916 original size:22 final size:23
Alignment explanation
Indices: 1396874--1396919 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 23
1396864 TATTTATATA
1396874 TTTTATAATTAAATTTAAATAATT
1 TTTTATAATTAAA-TTAAATAATT
1396898 TTTTATTAATTAAA-T-AATAATT
1 TTTTA-TAATTAAATTAAATAATT
1396920 CAAATTAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
22 7 0.33
23 1 0.05
24 5 0.24
25 8 0.38
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (23 bp):
TTTTATAATTAAATTAAATAATT
Found at i:1397077 original size:21 final size:21
Alignment explanation
Indices: 1397053--1397134 Score: 67
Period size: 21 Copynumber: 3.9 Consensus size: 21
1397043 CTTAATAATT
1397053 TATATATTAATATTTTATTTA
1 TATATATTAATATTTTATTTA
* * * *
1397074 TATATTTTTATATTATAATTA
1 TATATATTAATATTTTATTTA
* *
1397095 TATTTA-AAATATTTTAATTTA
1 TATATATTAATATTTT-ATTTA
* *
1397116 TATAAATTTTATATTTTAT
1 TATATA-TTAATATTTTAT
1397135 ACTTATATTT
Statistics
Matches: 44, Mismatches: 14, Indels: 5
0.70 0.22 0.08
Matches are distributed among these distances:
20 6 0.14
21 29 0.66
22 2 0.05
23 7 0.16
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (21 bp):
TATATATTAATATTTTATTTA
Found at i:1397098 original size:27 final size:27
Alignment explanation
Indices: 1397050--1397141 Score: 70
Period size: 27 Copynumber: 3.5 Consensus size: 27
1397040 AAACTTAATA
* *
1397050 ATTTATATATTA-ATATTTTATTTATAT
1 ATTTTTATATTATA-ATTATATTTATAT
*
1397077 ATTTTTATATTATAATTATATTTAAAAT
1 ATTTTTATATTATAATTATATTT-ATAT
* *
1397105 ATTTTAAT-TTAT-A-TAAATTT-TAT
1 ATTTTTATATTATAATTATATTTATAT
1397128 A-TTTTATACTTATA
1 ATTTTTATA-TTATA
1397142 TTTAAAATTT
Statistics
Matches: 53, Mismatches: 7, Indels: 12
0.74 0.10 0.17
Matches are distributed among these distances:
22 5 0.09
23 3 0.06
24 4 0.08
25 6 0.11
26 1 0.02
27 23 0.43
28 11 0.21
ACGTcount: A:0.39, C:0.01, G:0.00, T:0.60
Consensus pattern (27 bp):
ATTTTTATATTATAATTATATTTATAT
Found at i:1397141 original size:45 final size:41
Alignment explanation
Indices: 1397061--1397149 Score: 124
Period size: 45 Copynumber: 2.1 Consensus size: 41
1397051 TTTATATATT
1397061 AATATTTTATTTATATATTTTTATATTATAATTATATTTAA
1 AATATTTTATTTATATATTTTTATATTATAATTATATTTAA
* *
1397102 AATATTTTAATTTATATAAATTTTATATTTTATACTTATATTTAA
1 AATATTTT-ATTTATAT--ATTTT-TATATTATAATTATATTTAA
1397147 AAT
1 AAT
1397150 TTATTCGTCT
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
41 8 0.19
42 8 0.19
44 5 0.12
45 21 0.50
ACGTcount: A:0.40, C:0.01, G:0.00, T:0.58
Consensus pattern (41 bp):
AATATTTTATTTATATATTTTTATATTATAATTATATTTAA
Found at i:1397408 original size:25 final size:25
Alignment explanation
Indices: 1397375--1397425 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
1397365 TATAAATTTA
1397375 AAAAATTCACTCATAAAGTAGATAT
1 AAAAATTCACTCATAAAGTAGATAT
* * * *
1397400 AAAACTTCATTTATAAATTAGATAT
1 AAAAATTCACTCATAAAGTAGATAT
1397425 A
1 A
1397426 TTATATTAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.51, C:0.10, G:0.06, T:0.33
Consensus pattern (25 bp):
AAAAATTCACTCATAAAGTAGATAT
Found at i:1397586 original size:21 final size:21
Alignment explanation
Indices: 1397544--1397586 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
1397534 TATTTACAAT
* *
1397544 AAATTATATATATTAAACATA
1 AAATTATATATATAAAAAATA
*
1397565 AAATTATATATCTAAAAAATA
1 AAATTATATATATAAAAAATA
1397586 A
1 A
1397587 CCAAAATTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (21 bp):
AAATTATATATATAAAAAATA
Found at i:1397939 original size:31 final size:31
Alignment explanation
Indices: 1397904--1397965 Score: 83
Period size: 31 Copynumber: 2.0 Consensus size: 31
1397894 TAAAATTTAA
*
1397904 TTTTA-TT-AAATAATAATTATATATTTAAATT
1 TTTTATTTAAAATAA-AA-TATAAATTTAAATT
1397935 TTTTATTTAAAATAAAATATAAATTTAAATT
1 TTTTATTTAAAATAAAATATAAATTTAAATT
1397966 AATTTAAGTT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
31 18 0.64
32 4 0.14
33 6 0.21
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (31 bp):
TTTTATTTAAAATAAAATATAAATTTAAATT
Found at i:1398250 original size:19 final size:20
Alignment explanation
Indices: 1398218--1398257 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
1398208 TTTATATATT
1398218 ATTTAAAAAATAAATA-AAA
1 ATTTAAAAAATAAATATAAA
**
1398237 ATTTAAAATTTAAATATAAA
1 ATTTAAAAAATAAATATAAA
1398257 A
1 A
1398258 AATCTAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (20 bp):
ATTTAAAAAATAAATATAAA
Found at i:1398846 original size:31 final size:31
Alignment explanation
Indices: 1398806--1398869 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
1398796 TAACATATAT
1398806 AATTTAAAAATAAAT-TAAAACTTAAAAA-AA
1 AATTTAAAAA-AAATATAAAACTTAAAAATAA
1398836 AATTTAAAAAAATATATAAAACTTAAAAATAA
1 AATTTAAAAAAA-ATATAAAACTTAAAAATAA
1398868 AA
1 AA
1398870 ACTTAAGTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
29 2 0.06
30 12 0.39
31 13 0.42
32 4 0.13
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (31 bp):
AATTTAAAAAAAATATAAAACTTAAAAATAA
Found at i:1399021 original size:11 final size:11
Alignment explanation
Indices: 1399005--1399074 Score: 52
Period size: 11 Copynumber: 5.8 Consensus size: 11
1398995 ATTATTTTTT
1399005 AATAATATAAA
1 AATAATATAAA
1399016 AATAATATAAA
1 AATAATATAAA
*
1399027 CACGATATTTATAAA
1 -A--ATA-ATATAAA
1399042 AA-AATATTTAAA
1 AATAATA--TAAA
*
1399054 ATATAACATAAA
1 A-ATAATATAAA
1399066 AATAATATA
1 AATAATATA
1399075 CACATGATAT
Statistics
Matches: 47, Mismatches: 4, Indels: 16
0.70 0.06 0.24
Matches are distributed among these distances:
10 2 0.04
11 19 0.40
12 12 0.26
13 1 0.02
14 7 0.15
15 6 0.13
ACGTcount: A:0.64, C:0.04, G:0.01, T:0.30
Consensus pattern (11 bp):
AATAATATAAA
Found at i:1399189 original size:22 final size:22
Alignment explanation
Indices: 1399147--1399189 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
1399137 AAAAAATTTT
**
1399147 ATAAAAATATAATATTTTATAC
1 ATAAAAATATAATATAATATAC
1399169 ATAAAAA-ATAATATAAATATA
1 ATAAAAATATAATAT-AATATA
1399190 AATATATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (22 bp):
ATAAAAATATAATATAATATAC
Found at i:1399285 original size:19 final size:18
Alignment explanation
Indices: 1399261--1399301 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
1399251 TTACTGAACT
*
1399261 AAAAAAAGATTAAAAGAAA
1 AAAAAAAG-CTAAAAGAAA
*
1399280 AAAAAAAGCTACAAGAAA
1 AAAAAAAGCTAAAAGAAA
1399298 AAAA
1 AAAA
1399302 GAAAACGTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.78, C:0.05, G:0.10, T:0.07
Consensus pattern (18 bp):
AAAAAAAGCTAAAAGAAA
Found at i:1399806 original size:6 final size:6
Alignment explanation
Indices: 1399795--1399836 Score: 52
Period size: 6 Copynumber: 7.3 Consensus size: 6
1399785 TATAAAAAAT
* *
1399795 AATATA AATATA TATAT- AATATA AAAAT- AATATA AATATA AA
1 AATATA AATATA AATATA AATATA AATATA AATATA AATATA AA
1399837 ATTATTAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
5 8 0.27
6 22 0.73
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (6 bp):
AATATA
Found at i:1399813 original size:17 final size:16
Alignment explanation
Indices: 1399793--1399837 Score: 63
Period size: 17 Copynumber: 2.7 Consensus size: 16
1399783 AATATAAAAA
*
1399793 ATAATATAAATATATAT
1 ATAATATAAAAATA-AT
1399810 ATAATATAAAAATAAT
1 ATAATATAAAAATAAT
1399826 ATAAATATAAAA
1 AT-AATATAAAA
1399838 TTATTAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
16 4 0.15
17 22 0.85
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (16 bp):
ATAATATAAAAATAAT
Found at i:1399817 original size:11 final size:11
Alignment explanation
Indices: 1399795--1399835 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
1399785 TATAAAAAAT
1399795 AATATAAATATA
1 AATAT-AATATA
*
1399807 TATATAATATA
1 AATATAATATA
*
1399818 AAAATAATATA
1 AATATAATATA
1399829 AATATAA
1 AATATAA
1399836 AATTATTAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
11 21 0.84
12 4 0.16
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (11 bp):
AATATAATATA
Found at i:1399863 original size:10 final size:10
Alignment explanation
Indices: 1399833--1399894 Score: 58
Period size: 10 Copynumber: 6.4 Consensus size: 10
1399823 AATATAAATA
1399833 TAAAAT-TAT
1 TAAAATATAT
*
1399842 TAAAATTTAT
1 TAAAATATAT
*
1399852 TAAAATAAAT
1 TAAAATATAT
*
1399862 TATTAATATAT
1 TA-AAATATAT
1399873 TAAAA-ATA-
1 TAAAATATAT
*
1399881 TAAAATATTT
1 TAAAATATAT
1399891 TAAA
1 TAAA
1399895 TACAATCATA
Statistics
Matches: 43, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
8 5 0.12
9 11 0.26
10 19 0.44
11 8 0.19
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (10 bp):
TAAAATATAT
Found at i:1399883 original size:24 final size:24
Alignment explanation
Indices: 1399828--1399889 Score: 65
Period size: 23 Copynumber: 2.6 Consensus size: 24
1399818 AAAATAATAT
*
1399828 AAATATAAAATTATTAAAATTTATT
1 AAATAT-AAATTATTAAAATTTATA
*
1399853 AAA-ATAAATTATTAATATATTA-A
1 AAATATAAATTATTAAAAT-TTATA
*
1399876 AAATATAAAATATT
1 AAATATAAATTATT
1399890 TTAAATACAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
23 15 0.47
24 14 0.44
25 3 0.09
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (24 bp):
AAATATAAATTATTAAAATTTATA
Found at i:1399916 original size:39 final size:41
Alignment explanation
Indices: 1399821--1399925 Score: 103
Period size: 39 Copynumber: 2.6 Consensus size: 41
1399811 TAATATAAAA
* *
1399821 ATAATATAAATATAAAATTATTAAAATTTATTAAAATAAATT
1 ATAATATTAATA-AAAATTATTAAAATTTATTAAAATAAATC
*
1399863 ATTAATA-TATTAAAAA-TA-TAAAATATT-TT-AAATACAATC
1 A-TAATATTAATAAAAATTATTAAAAT-TTATTAAAATA-AATC
1399902 ATAATATTAATAAAAAATTATTAA
1 ATAATATTAAT-AAAAATTATTAA
1399926 TTAAAAAAGT
Statistics
Matches: 52, Mismatches: 4, Indels: 14
0.74 0.06 0.20
Matches are distributed among these distances:
38 10 0.19
39 15 0.29
40 9 0.17
41 6 0.12
42 7 0.13
43 5 0.10
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (41 bp):
ATAATATTAATAAAAATTATTAAAATTTATTAAAATAAATC
Found at i:1400089 original size:15 final size:16
Alignment explanation
Indices: 1400071--1400108 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
1400061 TATAAATACC
1400071 TTATTAATCAAAT-TT
1 TTATTAATCAAATATT
*
1400086 TTATTAATTAAATAATT
1 TTATTAATCAAAT-ATT
1400103 TTATTA
1 TTATTA
1400109 TGAAAAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 12 0.60
17 8 0.40
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (16 bp):
TTATTAATCAAATATT
Found at i:1400538 original size:16 final size:16
Alignment explanation
Indices: 1400519--1400575 Score: 51
Period size: 16 Copynumber: 3.3 Consensus size: 16
1400509 AAATATAAAA
1400519 TTTTATTATTTTTAAT
1 TTTTATTATTTTTAAT
*
1400535 TTTTATTAAATATTTTAAA
1 TTTTATT--AT-TTTTAAT
* *
1400554 TTTTACTATATTTAAGT
1 TTTTATTATTTTTAA-T
1400571 TTTTA
1 TTTTA
1400576 ATTAATTATG
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
16 12 0.36
17 7 0.21
18 2 0.06
19 12 0.36
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.65
Consensus pattern (16 bp):
TTTTATTATTTTTAAT
Found at i:1400544 original size:36 final size:38
Alignment explanation
Indices: 1400504--1400580 Score: 88
Period size: 35 Copynumber: 2.1 Consensus size: 38
1400494 ATTAGAATAT
* *
1400504 TTAAAAAATATAAAATTTTATTATTTTTAA-TTTTT-A
1 TTAAAAAATATAAAATTTTACTATATTTAAGTTTTTAA
* * *
1400540 TT-AAATATTTTAAATTTTACTATATTTAAGTTTTTAA
1 TTAAAAAATATAAAATTTTACTATATTTAAGTTTTTAA
1400577 TTAA
1 TTAA
1400581 TTATGAATGT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
35 22 0.67
36 7 0.21
37 3 0.09
38 1 0.03
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.56
Consensus pattern (38 bp):
TTAAAAAATATAAAATTTTACTATATTTAAGTTTTTAA
Found at i:1401860 original size:23 final size:22
Alignment explanation
Indices: 1401812--1401868 Score: 69
Period size: 23 Copynumber: 2.5 Consensus size: 22
1401802 AATAAAATAA
*
1401812 AATTTAATGATAAAAAATTAATTT
1 AATTTAAT--TAAAAAATTAAATT
*
1401836 AATTTAATTAAAAATTTAAAATT
1 AATTTAATTAAAAAATT-AAATT
1401859 AATTTAATTA
1 AATTTAATTA
1401869 TATATAATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
22 8 0.27
23 14 0.47
24 8 0.27
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (22 bp):
AATTTAATTAAAAAATTAAATT
Found at i:1403248 original size:17 final size:17
Alignment explanation
Indices: 1403215--1403248 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
1403205 ATTTTCACTG
**
1403215 GAAAAAGAAAACGAAAA
1 GAAAAAGAAAAAAAAAA
1403232 GAAAAAGAAAAAAAAAA
1 GAAAAAGAAAAAAAAAA
1403249 TCTGAAGCCA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.82, C:0.03, G:0.15, T:0.00
Consensus pattern (17 bp):
GAAAAAGAAAAAAAAAA
Found at i:1403515 original size:3 final size:3
Alignment explanation
Indices: 1403507--1403535 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
1403497 AATATCCCGA
1403507 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1403536 AAGAAAAACT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:1404103 original size:25 final size:26
Alignment explanation
Indices: 1404057--1404108 Score: 63
Period size: 25 Copynumber: 2.0 Consensus size: 26
1404047 TTTTTAAAAA
1404057 TTTATATATATTTATAAAAT-AATAT
1 TTTATATATATTTATAAAATAAATAT
* *
1404082 TTTATATTTATATTA-AATATAAATAT
1 TTTATATATAT-TTATAAAATAAATAT
1404108 T
1 T
1404109 AAAAATAAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
25 14 0.61
26 9 0.39
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (26 bp):
TTTATATATATTTATAAAATAAATAT
Found at i:1410668 original size:14 final size:15
Alignment explanation
Indices: 1410632--1410674 Score: 54
Period size: 14 Copynumber: 2.9 Consensus size: 15
1410622 TTTATTTAAA
1410632 TTTAATCATAAAATAT
1 TTTAAT-ATAAAATAT
*
1410648 ATTAATATAAAAT-T
1 TTTAATATAAAATAT
1410662 TTTAATA-AAAATA
1 TTTAATATAAAATA
1410675 AATAATGATT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 5 0.21
14 7 0.29
15 7 0.29
16 5 0.21
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (15 bp):
TTTAATATAAAATAT
Found at i:1410986 original size:13 final size:13
Alignment explanation
Indices: 1410968--1411001 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
1410958 ATTTAATTTA
1410968 ATATAAATTAATC
1 ATATAAATTAATC
*
1410981 ATATAATTTAATC
1 ATATAAATTAATC
1410994 ATTATAAA
1 A-TATAAA
1411002 AGTCTAATCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
13 13 0.72
14 5 0.28
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.41
Consensus pattern (13 bp):
ATATAAATTAATC
Found at i:1411988 original size:4 final size:4
Alignment explanation
Indices: 1411979--1412006 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
1411969 ATAATAACAA
1411979 TAAT TAAT TAAT TAAT TAAT TAAT TAAT
1 TAAT TAAT TAAT TAAT TAAT TAAT TAAT
1412007 AGAGTATCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (4 bp):
TAAT
Found at i:1412149 original size:25 final size:24
Alignment explanation
Indices: 1412103--1412153 Score: 59
Period size: 25 Copynumber: 2.1 Consensus size: 24
1412093 TATTAAAAAT
*
1412103 TTAAATATAATTTTATAATATTATA
1 TTAAAGATAATTTTATAATATT-TA
*
1412128 TTAAAGATAAATTTTAT-TTATTTA
1 TTAAAGAT-AATTTTATAATATTTA
1412152 TT
1 TT
1412154 TATTTAAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 4 0.17
25 11 0.48
26 8 0.35
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (24 bp):
TTAAAGATAATTTTATAATATTTA
Found at i:1419124 original size:30 final size:30
Alignment explanation
Indices: 1419088--1419155 Score: 86
Period size: 30 Copynumber: 2.3 Consensus size: 30
1419078 TATTATACCA
*
1419088 AAATAAATTTATAATCTTTT-ATTTGT-TTT
1 AAATAAATTTATAAT-TTTTAATTTATATTT
*
1419117 CAAATAAATTTTTAATTTTTAATTTATATTT
1 -AAATAAATTTATAATTTTTAATTTATATTT
1419148 AAATAAAT
1 AAATAAAT
1419156 ACTTAACATA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
29 4 0.12
30 27 0.79
31 3 0.09
ACGTcount: A:0.41, C:0.03, G:0.01, T:0.54
Consensus pattern (30 bp):
AAATAAATTTATAATTTTTAATTTATATTT
Found at i:1419184 original size:17 final size:17
Alignment explanation
Indices: 1419164--1419208 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
1419154 ATACTTAACA
1419164 TAAATTAATATTTCATT
1 TAAATTAATATTTCATT
* * *
1419181 TAAAATAAAATTTTATT
1 TAAATTAATATTTCATT
1419198 TAAATATAATA
1 TAAAT-TAATA
1419209 AAAATATAAA
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
17 18 0.82
18 4 0.18
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (17 bp):
TAAATTAATATTTCATT
Found at i:1425823 original size:16 final size:16
Alignment explanation
Indices: 1425802--1425869 Score: 59
Period size: 16 Copynumber: 4.2 Consensus size: 16
1425792 ATATATTTTA
1425802 TTATATTTAAAAAATT
1 TTATATTTAAAAAATT
*
1425818 TTATATTTATATAAATT
1 TTATATTTA-AAAAATT
* * *
1425835 TTAAAATATAAATAA-T
1 TT-ATATTTAAAAAATT
1425851 TTAT-TTTAAATAAATT
1 TTATATTTAAA-AAATT
1425867 TTA
1 TTA
1425870 AAATATATAT
Statistics
Matches: 40, Mismatches: 8, Indels: 8
0.71 0.14 0.14
Matches are distributed among these distances:
14 5 0.12
15 3 0.08
16 16 0.40
17 11 0.28
18 5 0.12
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (16 bp):
TTATATTTAAAAAATT
Found at i:1425835 original size:26 final size:27
Alignment explanation
Indices: 1425788--1425840 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 27
1425778 ATTTATTTAT
*
1425788 ATTTATATATTTTATTATATTTAAAAA
1 ATTTATATATTTTATTAAATTTAAAAA
*
1425815 ATTT-TATA-TTTATATAAATTTTAAAA
1 ATTTATATATTTTAT-TAAATTTAAAAA
1425841 TATAAATAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
25 5 0.22
26 14 0.61
27 4 0.17
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (27 bp):
ATTTATATATTTTATTAAATTTAAAAA
Found at i:1425852 original size:34 final size:33
Alignment explanation
Indices: 1425782--1425876 Score: 106
Period size: 34 Copynumber: 2.9 Consensus size: 33
1425772 TTACGTATTT
* *
1425782 ATTTATATTTATAT--ATTTTATTATATTTAAAAA
1 ATTTATATTTATATAAATTTTA--AAATATAAAAA
*
1425815 ATTTTATATTTATATAAATTTTAAAATATAAATA
1 A-TTTATATTTATATAAATTTTAAAATATAAAAA
*
1425849 ATTTAT-TTTAAATAAATTTTAAAATATA
1 ATTTATATTTATATAAATTTTAAAATATA
1425877 TATCCATATA
Statistics
Matches: 55, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
32 21 0.38
33 6 0.11
34 22 0.40
36 6 0.11
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (33 bp):
ATTTATATTTATATAAATTTTAAAATATAAAAA
Found at i:1425994 original size:62 final size:64
Alignment explanation
Indices: 1425928--1426049 Score: 157
Period size: 62 Copynumber: 1.9 Consensus size: 64
1425918 AATTAATATA
1425928 ATATAAATATAATATTATT-AAATA-AT-T-ATATAAATATAATACATA-TAAAA-TTTAAATAT
1 ATATAAATATAA-ATT-TTAAAATATATATAATATAAAT-TAATA-ATATTAAAATTTTAAATAT
1425987 GTG
62 GTG
*
1425990 ATATAAATATAAATTTTAAAATATATATAATATAAATTATTAATATTAAAATTTTAAATA
1 ATATAAATATAAATTTTAAAATATATATAATATAAATTAATAATATTAAAATTTTAAATA
1426050 AATATAAAAT
Statistics
Matches: 53, Mismatches: 1, Indels: 10
0.83 0.02 0.16
Matches are distributed among these distances:
60 2 0.04
61 8 0.15
62 17 0.32
63 10 0.19
64 16 0.30
ACGTcount: A:0.56, C:0.01, G:0.02, T:0.42
Consensus pattern (64 bp):
ATATAAATATAAATTTTAAAATATATATAATATAAATTAATAATATTAAAATTTTAAATATGTG
Found at i:1426015 original size:29 final size:30
Alignment explanation
Indices: 1425923--1426081 Score: 88
Period size: 29 Copynumber: 5.3 Consensus size: 30
1425913 CAAAAAATTA
1425923 ATATAATATAAA-TAT-AATATTATTAAATAATT
1 ATATAATATAAATTATAAATATTA--AAAT-A-T
* *
1425955 ATATAAATATAATACATATAAA-ATT-TAA-AT
1 ATAT-AATATAA-A-TTATAAATATTAAAATAT
* * *
1425985 ATGTGATATAAA-TATAAATTTTAAAATAT
1 ATATAATATAAATTATAAATATTAAAATAT
*
1426014 ATATAATATAAATTATTAATATTAAAAT-T
1 ATATAATATAAATTATAAATATTAAAATAT
*
1426043 -T-TAA-ATAAA-TATAAAATATTTTAAATAT
1 ATATAATATAAATTAT-AAATA-TTAAAATAT
1426071 AATATAATATA
1 -ATATAATATA
1426082 TATGATTTAT
Statistics
Matches: 100, Mismatches: 11, Indels: 32
0.70 0.08 0.22
Matches are distributed among these distances:
25 3 0.03
26 15 0.15
27 11 0.11
28 5 0.05
29 19 0.19
30 18 0.18
31 4 0.04
32 7 0.07
33 9 0.09
34 1 0.01
36 6 0.06
37 2 0.02
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.42
Consensus pattern (30 bp):
ATATAATATAAATTATAAATATTAAAATAT
Found at i:1426060 original size:26 final size:26
Alignment explanation
Indices: 1425965--1426062 Score: 67
Period size: 26 Copynumber: 3.7 Consensus size: 26
1425955 ATATAAATAT
* * *
1425965 AATACATATAAAAT-TTAAATATGTGA
1 AATAAATATAAAATATTAAA-ATTTTA
* *
1425991 TATAAATAT-AAATTTTAAAATATATATA
1 AATAAATATAAAATATTAAAAT-T-T-TA
*
1426019 ATATAAAT-TATTAATATTAAAATTTTA
1 A-ATAAATATA-AAATATTAAAATTTTA
1426046 AATAAATATAAAATATT
1 AATAAATATAAAATATT
1426063 TTAAATATAA
Statistics
Matches: 56, Mismatches: 8, Indels: 16
0.70 0.10 0.20
Matches are distributed among these distances:
25 6 0.11
26 24 0.43
27 6 0.11
28 3 0.05
29 7 0.12
30 10 0.18
ACGTcount: A:0.56, C:0.01, G:0.02, T:0.41
Consensus pattern (26 bp):
AATAAATATAAAATATTAAAATTTTA
Found at i:1426060 original size:62 final size:60
Alignment explanation
Indices: 1425922--1426061 Score: 137
Period size: 62 Copynumber: 2.3 Consensus size: 60
1425912 TCAAAAAATT
1425922 AATATAATAT-AAATATAATATTATTAAATAATTATATAAATATAATACATATAAAATTTA
1 AATA-AATATAAAATATAATATTATTAAATAATTATATAAATATAATACATATAAAATTTA
** *
1425982 AATATGTGATATAAATATAA-ATT-TTAAAATATATATAATATAAAT-TATTA-ATATTAAAATT
1 AATAAAT-ATA-AAATATAATATTATT-AAATA-AT-T-ATATAAATATAATACATA-TAAAA-T
1426043 TTA
58 TTA
1426046 AATAAATATAAAATAT
1 AATAAATATAAAATAT
1426062 TTTAAATATA
Statistics
Matches: 66, Mismatches: 5, Indels: 16
0.76 0.06 0.18
Matches are distributed among these distances:
59 1 0.02
60 8 0.12
61 8 0.12
62 19 0.29
63 13 0.20
64 17 0.26
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.41
Consensus pattern (60 bp):
AATAAATATAAAATATAATATTATTAAATAATTATATAAATATAATACATATAAAATTTA
Found at i:1426076 original size:21 final size:21
Alignment explanation
Indices: 1426030--1426082 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
1426020 TATAAATTAT
*
1426030 TAATATTAAA-ATTTTAAATA
1 TAATATAAAATATTTTAAATA
1426050 -AATATAAAATATTTTAAATA
1 TAATATAAAATATTTTAAATA
*
1426070 TAATATAATATAT
1 TAATATAAAATAT
1426083 ATGATTTATT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 8 0.28
20 10 0.34
21 11 0.38
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (21 bp):
TAATATAAAATATTTTAAATA
Found at i:1426278 original size:25 final size:26
Alignment explanation
Indices: 1426245--1426321 Score: 75
Period size: 25 Copynumber: 2.9 Consensus size: 26
1426235 TTATATCGTG
1426245 TTTATAAATAAAATATTAT-ATAATTA
1 TTTA-AAATAAAATATTATAATAATTA
** *
1426271 TTTAAAATTTAATATTATAATAATTT
1 TTTAAAATAAAATATTATAATAATTA
* *
1426297 TTGTTAAATAAAATTATAATAATAA
1 TT-TAAAATAAAA-TATTATAATAA
1426322 ATATATTTTA
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
25 12 0.29
26 12 0.29
27 7 0.17
28 10 0.24
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.47
Consensus pattern (26 bp):
TTTAAAATAAAATATTATAATAATTA
Found at i:1426557 original size:6 final size:7
Alignment explanation
Indices: 1426539--1426564 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
1426529 GCAATACCCA
1426539 ATTTTTT
1 ATTTTTT
1426546 ATTTTTT
1 ATTTTTT
1426553 ATTTTTT
1 ATTTTTT
1426560 ATTTT
1 ATTTT
1426565 CCTTTTAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (7 bp):
ATTTTTT
Found at i:1427048 original size:2 final size:2
Alignment explanation
Indices: 1427043--1427071 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
1427033 AATATATATA
1427043 TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1427072 ATGCTGTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:1431297 original size:21 final size:20
Alignment explanation
Indices: 1431271--1431324 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 20
1431261 CTTTATTTAT
1431271 TTTTTATAATTAATAAAAATA
1 TTTTTATAATTAAT-AAAATA
* **
1431292 TTTTTAT-ATTTATATTATA
1 TTTTTATAATTAATAAAATA
1431311 TATTTTATAATTAA
1 T-TTTTATAATTAA
1431325 ATTTATTATT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
19 5 0.19
20 11 0.41
21 11 0.41
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (20 bp):
TTTTTATAATTAATAAAATA
Found at i:1431334 original size:20 final size:20
Alignment explanation
Indices: 1431289--1431336 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
1431279 ATTAATAAAA
* *
1431289 ATAT-TTTTATATTTATATT
1 ATATATTTTATAATTAAATT
1431308 ATATATTTTATAATTAAATT
1 ATATATTTTATAATTAAATT
1431328 -TATTATTTT
1 ATA-TATTTT
1431337 TTTAAATATT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 6 0.24
20 19 0.76
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (20 bp):
ATATATTTTATAATTAAATT
Found at i:1431337 original size:21 final size:19
Alignment explanation
Indices: 1431267--1431337 Score: 54
Period size: 21 Copynumber: 3.5 Consensus size: 19
1431257 TTATCTTTAT
1431267 TTAT-TTTTTATAATTAATAA
1 TTATATTTTTATAATT-A-AA
** * *
1431287 AAATATTTTTATATTTATA
1 TTATATTTTTATAATTAAA
1431306 TTATATATTTTATAATTAAA
1 TTATAT-TTTTATAATTAAA
1431326 TTTATTATTTTT
1 -TTA-TATTTTT
1431338 TTAAATATTA
Statistics
Matches: 39, Mismatches: 8, Indels: 7
0.72 0.15 0.13
Matches are distributed among these distances:
19 5 0.13
20 14 0.36
21 17 0.44
22 3 0.08
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (19 bp):
TTATATTTTTATAATTAAA
Found at i:1431538 original size:22 final size:22
Alignment explanation
Indices: 1431513--1431554 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
1431503 TCGTTGAATT
1431513 AATTAAATTAAATTGATTAAAA
1 AATTAAATTAAATTGATTAAAA
* *
1431535 AATTAATTTTAATTGATTAA
1 AATTAAATTAAATTGATTAA
1431555 TTTAATTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.43
Consensus pattern (22 bp):
AATTAAATTAAATTGATTAAAA
Found at i:1431561 original size:19 final size:19
Alignment explanation
Indices: 1431537--1431576 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
1431527 GATTAAAAAA
1431537 TTAATTTTAATTGA-TTAAT
1 TTAA-TTTAATTGATTTAAT
*
1431556 TTAATTTAATTTATTTAAT
1 TTAATTTAATTGATTTAAT
1431575 TT
1 TT
1431577 TAATAAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (19 bp):
TTAATTTAATTGATTTAAT
Found at i:1431595 original size:10 final size:10
Alignment explanation
Indices: 1431553--1431595 Score: 50
Period size: 10 Copynumber: 4.3 Consensus size: 10
1431543 TTAATTGATT
*
1431553 AATTTAATTT
1 AATTTAATTA
*
1431563 AATTTATTTA
1 AATTTAATTA
* *
1431573 ATTTTAATAA
1 AATTTAATTA
1431583 AATTTAATTA
1 AATTTAATTA
1431593 AAT
1 AAT
1431596 AAATTGATTT
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
10 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (10 bp):
AATTTAATTA
Found at i:1431678 original size:22 final size:22
Alignment explanation
Indices: 1431642--1431686 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 22
1431632 TTTTAAATCA
1431642 AATTAACAGAATAAATTAATATTT
1 AATTAACAGAATAAA-TAA-ATTT
1431666 AATTAA-A-AATAAATAAATTT
1 AATTAACAGAATAAATAAATTT
1431686 A
1 A
1431687 TTTTTTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
20 5 0.24
21 3 0.14
22 6 0.29
23 1 0.05
24 6 0.29
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (22 bp):
AATTAACAGAATAAATAAATTT
Found at i:1432026 original size:36 final size:36
Alignment explanation
Indices: 1431979--1432053 Score: 150
Period size: 36 Copynumber: 2.1 Consensus size: 36
1431969 AAAATAATAG
1431979 TAAATAATTAATTAATATTGTAGGATATGGTGTATC
1 TAAATAATTAATTAATATTGTAGGATATGGTGTATC
1432015 TAAATAATTAATTAATATTGTAGGATATGGTGTATC
1 TAAATAATTAATTAATATTGTAGGATATGGTGTATC
1432051 TAA
1 TAA
1432054 GATATAAATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.40, C:0.03, G:0.16, T:0.41
Consensus pattern (36 bp):
TAAATAATTAATTAATATTGTAGGATATGGTGTATC
Found at i:1433465 original size:20 final size:20
Alignment explanation
Indices: 1433386--1433468 Score: 64
Period size: 20 Copynumber: 4.1 Consensus size: 20
1433376 AATATCAATT
1433386 TAATTATAATACGTAAAATACGTA
1 TAATTATAATACGT-AAA-A--TA
* *
1433410 TAATTATAATA--T-CAATT
1 TAATTATAATACGTAAAATA
** *
1433427 TAATTATAATATTTTAAATA
1 TAATTATAATACGTAAAATA
1433447 TAATTATAATACGTAAAATA
1 TAATTATAATACGTAAAATA
1433467 TA
1 TA
1433469 TGAATACGAT
Statistics
Matches: 49, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
17 12 0.24
19 2 0.04
20 23 0.47
22 1 0.02
24 11 0.22
ACGTcount: A:0.51, C:0.05, G:0.04, T:0.41
Consensus pattern (20 bp):
TAATTATAATACGTAAAATA
Found at i:1433909 original size:579 final size:579
Alignment explanation
Indices: 1432853--1433966 Score: 2210
Period size: 579 Copynumber: 1.9 Consensus size: 579
1432843 AATAAAATAA
1432853 ATAATATTTTAAATATAATTATAATACGTAAAATATATGAATACGATATGAATATGACATGAGTA
1 ATAATATTTTAAATATAATTATAATACGTAAAATATATGAATACGATATGAATATGACATGAGTA
*
1432918 GTAAGATATACTCGTAAAAAAAATCAAAGTTTGAGTTCGTGTAAATGCATTCTTAAAGAGAATTA
66 GTAAGATATACTCGTAAAAAAAATCAAAGTTTGAGTTCATGTAAATGCATTCTTAAAGAGAATTA
1432983 ATCACAAATCACGAAATTAGATTATAGTCTTTGATCGTGAAATAGATTAAAATACTTAAATTAAA
131 ATCACAAATCACGAAATTAGATTATAGTCTTTGATCGTGAAATAGATTAAAATACTTAAATTAAA
1433048 AATAATATATATATATATAAATATGAGATGAATACACAATAATAGAGGCAAGTTCAAATTATTTT
196 AATAATATATATATATATAAATATGAGATGAATACACAATAATAGAGGCAAGTTCAAATTATTTT
1433113 GTGGATGACTAACTGACATTCATGTACTTAAATTCTGATTTTTAATTAATATTTTTTTGTATTTG
261 GTGGATGACTAACTGACATTCATGTACTTAAATTCTGATTTTTAATTAATATTTTTTTGTATTTG
1433178 CTTTGTTTTTTCTATTATAAAAAAATCAACAAAAATGAAGGAAATAAGAGAATTTTTATAAATAT
326 CTTTGTTTTTTCTATTATAAAAAAATCAACAAAAATGAAGGAAATAAGAGAATTTTTATAAATAT
1433243 GTAATACATATTTTTATAAAAAAATTATAAATATTAAAATTTAAATTTAAACCAAATTGAAATTT
391 GTAATACATATTTTTATAAAAAAATTATAAATATTAAAATTTAAATTTAAACCAAATTGAAATTT
1433308 CTTTTAAAATAATAATTACGTAAGACACTTGGATTAAATTCTCAATTCAAAACAAAAACCTCTTA
456 CTTTTAAAATAATAATTACGTAAGACACTTGGATTAAATTCTCAATTCAAAACAAAAACCTCTTA
1433373 AATAATATCAATTTAATTATAATACGTAAAATACGTATAATTATAATATCAATTTAATT
521 AATAATATCAATTTAATTATAATACGTAAAATACGTATAATTATAATATCAATTTAATT
1433432 ATAATATTTTAAATATAATTATAATACGTAAAATATATGAATACGATATGAATATGACATGAGTA
1 ATAATATTTTAAATATAATTATAATACGTAAAATATATGAATACGATATGAATATGACATGAGTA
1433497 GTAAGATATACTCGTAAAAAAAATCAAAGTTTGAGTTCATGTAAATGCATTCTTAAAGAGAATTA
66 GTAAGATATACTCGTAAAAAAAATCAAAGTTTGAGTTCATGTAAATGCATTCTTAAAGAGAATTA
*
1433562 ATCACAAATCACGAAATTAGATTATAGTCTTTGATCGTGAAATAGATTAAAATATTTAAATTAAA
131 ATCACAAATCACGAAATTAGATTATAGTCTTTGATCGTGAAATAGATTAAAATACTTAAATTAAA
1433627 AATAATATATATATATATAAATATGAGATGAATACACAATAATAGAGGCAAGTTCAAATTATTTT
196 AATAATATATATATATATAAATATGAGATGAATACACAATAATAGAGGCAAGTTCAAATTATTTT
1433692 GTGGATGACTAACTGACATTCATGTACTTAAATTCTGATTTTTAATTAATATTTTTTTGTATTTG
261 GTGGATGACTAACTGACATTCATGTACTTAAATTCTGATTTTTAATTAATATTTTTTTGTATTTG
1433757 CTTTGTTTTTTCTATTATAAAAAAATCAACAAAAATGAAGGAAATAAGAGAATTTTTATAAATAT
326 CTTTGTTTTTTCTATTATAAAAAAATCAACAAAAATGAAGGAAATAAGAGAATTTTTATAAATAT
1433822 GTAATACATATTTTTATAAAAAAATTATAAATATTAAAATTTAAATTTAAACCAAATTGAAATTT
391 GTAATACATATTTTTATAAAAAAATTATAAATATTAAAATTTAAATTTAAACCAAATTGAAATTT
1433887 CTTTTAAAATAATAATTACGTAAGACACTTGGATTAAATTCTCAATTCAAAACAAAAACCTCTTA
456 CTTTTAAAATAATAATTACGTAAGACACTTGGATTAAATTCTCAATTCAAAACAAAAACCTCTTA
1433952 AATAATATCAATTTA
521 AATAATATCAATTTA
1433967 GGTAATGTTT
Statistics
Matches: 533, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
579 533 1.00
ACGTcount: A:0.45, C:0.08, G:0.10, T:0.37
Consensus pattern (579 bp):
ATAATATTTTAAATATAATTATAATACGTAAAATATATGAATACGATATGAATATGACATGAGTA
GTAAGATATACTCGTAAAAAAAATCAAAGTTTGAGTTCATGTAAATGCATTCTTAAAGAGAATTA
ATCACAAATCACGAAATTAGATTATAGTCTTTGATCGTGAAATAGATTAAAATACTTAAATTAAA
AATAATATATATATATATAAATATGAGATGAATACACAATAATAGAGGCAAGTTCAAATTATTTT
GTGGATGACTAACTGACATTCATGTACTTAAATTCTGATTTTTAATTAATATTTTTTTGTATTTG
CTTTGTTTTTTCTATTATAAAAAAATCAACAAAAATGAAGGAAATAAGAGAATTTTTATAAATAT
GTAATACATATTTTTATAAAAAAATTATAAATATTAAAATTTAAATTTAAACCAAATTGAAATTT
CTTTTAAAATAATAATTACGTAAGACACTTGGATTAAATTCTCAATTCAAAACAAAAACCTCTTA
AATAATATCAATTTAATTATAATACGTAAAATACGTATAATTATAATATCAATTTAATT
Found at i:1434024 original size:15 final size:16
Alignment explanation
Indices: 1433998--1434028 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
1433988 TTGAACAGAA
1433998 AAAATATTTATTTATT
1 AAAATATTTATTTATT
1434014 AAAAT-TTTATTTATT
1 AAAATATTTATTTATT
1434029 TTTTTAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (16 bp):
AAAATATTTATTTATT
Found at i:1434095 original size:19 final size:17
Alignment explanation
Indices: 1434063--1434097 Score: 52
Period size: 19 Copynumber: 1.9 Consensus size: 17
1434053 TGTTATACTA
1434063 ATATTTTATAAATTTAT
1 ATATTTTATAAATTTAT
1434080 ATATTATTAGTAAATTTA
1 ATATT-TTA-TAAATTTA
1434098 ATGATATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 3 0.19
19 8 0.50
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (17 bp):
ATATTTTATAAATTTAT
Found at i:1434925 original size:20 final size:19
Alignment explanation
Indices: 1434900--1434943 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
1434890 TATTTAAAAA
*
1434900 ATATTAAAATATTATTTTTT
1 ATATTAAAAT-TTATATTTT
*
1434920 ATATTAATATTTATATTTT
1 ATATTAAAATTTATATTTT
1434939 A-ATTA
1 ATATTA
1434944 TGATTTAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 4 0.18
19 9 0.41
20 9 0.41
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (19 bp):
ATATTAAAATTTATATTTT
Found at i:1435031 original size:20 final size:21
Alignment explanation
Indices: 1434993--1435033 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
1434983 TAAATTTAAT
1434993 TAAATTTATTAATTCGAATAA
1 TAAATTTATTAATTCGAATAA
1435014 TAAATTTAATT-A-TCGAATAA
1 TAAATTT-ATTAATTCGAATAA
1435034 ATTTAACTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 8 0.42
21 8 0.42
22 3 0.16
ACGTcount: A:0.49, C:0.05, G:0.05, T:0.41
Consensus pattern (21 bp):
TAAATTTATTAATTCGAATAA
Found at i:1435636 original size:14 final size:15
Alignment explanation
Indices: 1435617--1435646 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
1435607 ATTTAAAAAA
1435617 AATATTTT-TATTTT
1 AATATTTTATATTTT
1435631 AATATTTTATATTTT
1 AATATTTTATATTTT
1435646 A
1 A
1435647 TAATTAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (15 bp):
AATATTTTATATTTT
Found at i:1436478 original size:15 final size:15
Alignment explanation
Indices: 1436458--1436496 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
1436448 AATTGACATA
*
1436458 AAAATTAAATTATTT
1 AAAATTAAATAATTT
1436473 AAAATTAAAATAATTT
1 AAAATT-AAATAATTT
1436489 -AAATTAAA
1 AAAATTAAA
1436497 AAATAAATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 3 0.14
15 11 0.50
16 8 0.36
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (15 bp):
AAAATTAAATAATTT
Found at i:1437123 original size:17 final size:16
Alignment explanation
Indices: 1437091--1437130 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
1437081 TATATTTTTT
1437091 ATTAATTATTTATTAAA
1 ATTAA-TATTTATTAAA
*
1437108 TTTAATATTTATTTAAA
1 ATTAATATTTA-TTAAA
1437125 ATTAAT
1 ATTAAT
1437131 TTTTGTAAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 6 0.30
17 14 0.70
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
ATTAATATTTATTAAA
Found at i:1437648 original size:27 final size:28
Alignment explanation
Indices: 1437618--1437670 Score: 81
Period size: 27 Copynumber: 1.9 Consensus size: 28
1437608 ATTTAAGTAA
*
1437618 ATTTTAAATTTAGATCA-TTTAAATTTT
1 ATTTTAAATTTAAATCATTTTAAATTTT
*
1437645 ATTTTAAATTTAAATTATTTTAAATT
1 ATTTTAAATTTAAATCATTTTAAATT
1437671 ATAAATTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 15 0.65
28 8 0.35
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.57
Consensus pattern (28 bp):
ATTTTAAATTTAAATCATTTTAAATTTT
Found at i:1437677 original size:17 final size:16
Alignment explanation
Indices: 1437643--1437704 Score: 72
Period size: 16 Copynumber: 3.8 Consensus size: 16
1437633 CATTTAAATT
1437643 TTATTTTAAATTTAAA
1 TTATTTTAAATTTAAA
1437659 TTATTTTAAATTATAAA
1 TTATTTTAAATT-TAAA
*
1437676 TTA-TTTAAAGTTTTAA
1 TTATTTTAAA-TTTAAA
*
1437692 TCATTTTATAATT
1 TTATTTTA-AATT
1437705 AAACAATTAA
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
16 23 0.57
17 15 0.38
18 2 0.05
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (16 bp):
TTATTTTAAATTTAAA
Found at i:1438240 original size:29 final size:31
Alignment explanation
Indices: 1438183--1438242 Score: 79
Period size: 29 Copynumber: 2.0 Consensus size: 31
1438173 CATTCATGAA
**
1438183 TTTATATTATCATATAATATTTATTTATTTT
1 TTTATATTATCATATAATATTTAAATATTTT
*
1438214 TTTATATTAT-A-ATTATATTTAAATATTTT
1 TTTATATTATCATATAATATTTAAATATTTT
1438243 ATATTTATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 15 0.58
30 1 0.04
31 10 0.38
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (31 bp):
TTTATATTATCATATAATATTTAAATATTTT
Found at i:1438242 original size:26 final size:25
Alignment explanation
Indices: 1438213--1438281 Score: 68
Period size: 26 Copynumber: 2.6 Consensus size: 25
1438203 TTATTTATTT
1438213 TTTTATA-TTATAATTATATTTAAATA
1 TTTTATATTTAT-ATTA-ATTTAAATA
*
1438239 TTTTATATTTATATTAATTTTAATAA
1 TTTTATATTTATATTAATTTAAAT-A
* *
1438265 ATTAATAATTTATATTA
1 TTTTAT-ATTTATATTA
1438282 TATAAATTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
25 7 0.19
26 16 0.43
27 14 0.38
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (25 bp):
TTTTATATTTATATTAATTTAAATA
Done.