Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold416
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1156864
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.33
File 1 of 8
Found at i:131 original size:1 final size:1
Alignment explanation
Indices: 125--208 Score: 87
Period size: 1 Copynumber: 84.0 Consensus size: 1
115 CATCCGGACC
* * * * * * *
125 TTTTTTTTGTTTTTTTTTGTTTTTTGTTTTTTTTGTTTTTTTGTTTTTTTTTTTTGTTTTTTTTG
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* *
190 TTTTCTTTTTGTTTTTTTT
1 TTTTTTTTTTTTTTTTTTT
209 GTGGAGGACG
Statistics
Matches: 65, Mismatches: 18, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
1 65 1.00
ACGTcount: A:0.00, C:0.01, G:0.10, T:0.89
Consensus pattern (1 bp):
T
Found at i:139 original size:9 final size:9
Alignment explanation
Indices: 125--210 Score: 102
Period size: 9 Copynumber: 9.1 Consensus size: 9
115 CATCCGGACC
125 TTTTTTTTG
1 TTTTTTTTG
134 TTTTTTTT-
1 TTTTTTTTG
*
142 TGTTTTTTG
1 TTTTTTTTG
151 TTTTTTTTG
1 TTTTTTTTG
*
160 TTTTTTTGTTTT
1 --TTTTT-TTTG
172 TTTTTTTTG
1 TTTTTTTTG
181 TTTTTTTTG
1 TTTTTTTTG
190 TTTTCTTTTTG
1 -TTT-TTTTTG
201 TTTTTTTTG
1 TTTTTTTTG
210 T
1 T
211 GGAGGACGCT
Statistics
Matches: 67, Mismatches: 4, Indels: 12
0.81 0.05 0.14
Matches are distributed among these distances:
8 7 0.10
9 35 0.52
10 11 0.16
11 11 0.16
12 3 0.04
ACGTcount: A:0.00, C:0.01, G:0.10, T:0.88
Consensus pattern (9 bp):
TTTTTTTTG
Found at i:147 original size:17 final size:16
Alignment explanation
Indices: 125--208 Score: 116
Period size: 17 Copynumber: 5.1 Consensus size: 16
115 CATCCGGACC
125 TTTTTTTTGTTTTTTT
1 TTTTTTTTGTTTTTTT
141 TTGTTTTTTGTTTTTTT
1 TT-TTTTTTGTTTTTTT
158 TGTTTTTTTGTTTTTTT
1 T-TTTTTTTGTTTTTTT
175 TTTTTGTTT-TTTTTGTT
1 TTTTT-TTTGTTTTT-TT
*
192 TTCTTTTTGTTTTTTT
1 TTTTTTTTGTTTTTTT
208 T
1 T
209 GTGGAGGACG
Statistics
Matches: 62, Mismatches: 1, Indels: 10
0.85 0.01 0.14
Matches are distributed among these distances:
16 17 0.27
17 44 0.71
18 1 0.02
ACGTcount: A:0.00, C:0.01, G:0.10, T:0.89
Consensus pattern (16 bp):
TTTTTTTTGTTTTTTT
Found at i:178 original size:30 final size:29
Alignment explanation
Indices: 125--210 Score: 120
Period size: 30 Copynumber: 3.0 Consensus size: 29
115 CATCCGGACC
* *
125 TTTTTT-TTGTTTTTTTTTGTTTTTTGTT
1 TTTTTTGTTTTTTTTTTTTTTTTTTTGTT
153 TTTTTTGTTTTTTTGTTTTTTTTTTTTGTT
1 TTTTTTGTTTTTTT-TTTTTTTTTTTTGTT
* *
183 TTTTTTGTTTTCTTTTTGTTTTTTTTGT
1 TTTTTTGTTTTTTTTTTTTTTTTTTTGT
211 GGAGGACGCT
Statistics
Matches: 52, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
28 6 0.12
29 19 0.37
30 27 0.52
ACGTcount: A:0.00, C:0.01, G:0.10, T:0.88
Consensus pattern (29 bp):
TTTTTTGTTTTTTTTTTTTTTTTTTTGTT
Found at i:14109 original size:52 final size:51
Alignment explanation
Indices: 14031--14179 Score: 217
Period size: 52 Copynumber: 2.9 Consensus size: 51
14021 CGAAATATGA
14031 AAATTTGCCTGCATGTATCGATACATTGAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTG-ATAGTGTATCGATACATCTGGGC
* * *
14083 AAATTTGCCTGCATGTATTGATACATTTTATAATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACA-TTGATAGTGTATCGATACATCTGGGC
* **
14135 AAATTTACCTGCATGTATCGATACAAAGATCAGTGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACATTGAT-AGTGTATCGATACA
14180 ATGTATCGAT
Statistics
Matches: 86, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
51 2 0.02
52 82 0.95
53 2 0.02
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.34
Consensus pattern (51 bp):
AAATTTGCCTGCATGTATCGATACATTGATAGTGTATCGATACATCTGGGC
Found at i:14186 original size:13 final size:13
Alignment explanation
Indices: 14168--14192 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14158 CAAAGATCAG
14168 TGTATCGATACAA
1 TGTATCGATACAA
14181 TGTATCGATACA
1 TGTATCGATACA
14193 TTTAAGTGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:14507 original size:55 final size:52
Alignment explanation
Indices: 14447--14691 Score: 182
Period size: 49 Copynumber: 5.0 Consensus size: 52
14437 CGATATTGGG
*
14447 CTTAAAGATGAGAAAAAGGATG-TCAATGTGCTGATTCAAGGCCAGCTACATTGAA
1 CTTAAAGATG-G-AAAAGG-TGCT-AATATGCTGATTCAAGGCCAGCTACATTGAA
* *
14502 CTTAAAGATGGAAAAGGTGCTAATATGCTGATTCAAGGCCAGCTATATTGGA
1 CTTAAAGATGGAAAAGGTGCTAATATGCTGATTCAAGGCCAGCTACATTGAA
* * * *
14554 C-T-----T---AAAGGTGCCAATGTGCTGATTCAAGGTCAGCTACATTGGA
1 CTTAAAGATGGAAAAGGTGCTAATATGCTGATTCAAGGCCAGCTACATTGAA
* * * * * *
14597 CTTAAATAT-G--AAGGTGCCAATATGCTGATTTAAGGCCAGCGATATTGGA
1 CTTAAAGATGGAAAAGGTGCTAATATGCTGATTCAAGGCCAGCTACATTGAA
* * * *
14646 CTT-AA-A-GG-CAATGTGCCAATATGCTGATTCAAGGCCAGCTATATTG
1 CTTAAAGATGGAAAAGGTGCTAATATGCTGATTCAAGGCCAGCTACATTG
14692 GGCTTAAAAG
Statistics
Matches: 165, Mismatches: 15, Indels: 27
0.80 0.07 0.13
Matches are distributed among these distances:
43 37 0.22
44 1 0.01
46 1 0.01
47 2 0.01
48 36 0.22
49 38 0.23
51 1 0.01
52 31 0.19
53 7 0.04
54 1 0.01
55 10 0.06
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.27
Consensus pattern (52 bp):
CTTAAAGATGGAAAAGGTGCTAATATGCTGATTCAAGGCCAGCTACATTGAA
Found at i:14562 original size:43 final size:43
Alignment explanation
Indices: 14514--14699 Score: 210
Period size: 48 Copynumber: 4.1 Consensus size: 43
14504 TAAAGATGGA
*
14514 AAAGGTGCTAATATGCTGATTCAAGGCCAGCTATATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* * *
14557 AAAGGTGCCAATGTGCTGATTCAAGGTCAGCTACATTGGACTTAAAT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGAC-T---T
* *
14604 ATGAAGGTGCCAATATGCTGATTTAAGGCCAGCGATATTGGACTT
1 A--AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
*
14649 AAAGGCAATGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGGCTT
1 AAA-G----GTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
14697 AAA
1 AAA
14700 AGGAGACGCC
Statistics
Matches: 120, Mismatches: 12, Indels: 17
0.81 0.08 0.11
Matches are distributed among these distances:
43 39 0.32
44 2 0.02
45 2 0.02
47 2 0.02
48 40 0.33
49 35 0.29
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (43 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
Found at i:14645 original size:92 final size:94
Alignment explanation
Indices: 14461--14699 Score: 311
Period size: 92 Copynumber: 2.5 Consensus size: 94
14451 AAGATGAGAA
* * *
14461 AAAGGATGTCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGCTAAT
1 AAAGG-TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGG-AAAGGTGCCAAT
*
14526 ATGCTGATTCAAGGCCAGCTATATTGGACTT
64 ATGCTGATTCAAGGCCAGCGATATTGGACTT
* *
14557 AAAGGTGCCAATGTGCTGATTCAAGGTCAGCTACATTGGACTTAAATAT-G-AAGGTGCCAATAT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAGGTGCCAATAT
*
14620 GCTGATTTAAGGCCAGCGATATTGGACTT
66 GCTGATTCAAGGCCAGCGATATTGGACTT
* * *
14649 AAAGGCAATGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGGCTTAAA
1 AAA-G----GTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAA
14700 AGGAGACGCC
Statistics
Matches: 127, Mismatches: 11, Indels: 9
0.86 0.07 0.06
Matches are distributed among these distances:
92 42 0.33
93 1 0.01
94 1 0.01
95 40 0.31
96 5 0.04
97 38 0.30
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.27
Consensus pattern (94 bp):
AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAGGTGCCAATAT
GCTGATTCAAGGCCAGCGATATTGGACTT
Found at i:14776 original size:28 final size:28
Alignment explanation
Indices: 14707--14817 Score: 109
Period size: 28 Copynumber: 3.9 Consensus size: 28
14697 AAAAGGAGAC
*
14707 GCCACCAACTTGTGTGGGCTTTTGAGAGGTTT
1 GCCACTAACTTGTGT--GCTTTTGA-AGG-TT
14739 G-CA-TCAACTTGTGTGCTTTTGAAGGTT
1 GCCACT-AACTTGTGTGCTTTTGAAGGTT
* * * *
14766 GCTACTGACTTGTGGGCTTTTAAAGGTT
1 GCCACTAACTTGTGTGCTTTTGAAGGTT
*
14794 GCCACTAACCTGTGTGCTTTTGAA
1 GCCACTAACTTGTGTGCTTTTGAA
14818 TTCTGATTCA
Statistics
Matches: 66, Mismatches: 10, Indels: 10
0.77 0.12 0.12
Matches are distributed among these distances:
27 3 0.05
28 42 0.64
29 9 0.14
31 11 0.17
32 1 0.02
ACGTcount: A:0.18, C:0.18, G:0.27, T:0.37
Consensus pattern (28 bp):
GCCACTAACTTGTGTGCTTTTGAAGGTT
Found at i:16489 original size:22 final size:21
Alignment explanation
Indices: 16449--16490 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
16439 ATATCATATG
16449 TAAATATAAATTTTAAAATTA
1 TAAATATAAATTTTAAAATTA
* *
16470 TAAATATTTAATTTTTAAATT
1 TAAATA-TAAATTTTAAAATT
16491 TTTAAAAATC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (21 bp):
TAAATATAAATTTTAAAATTA
Found at i:16662 original size:21 final size:20
Alignment explanation
Indices: 16623--16663 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
16613 TTGAGGGCCA
*
16623 AAAAATTAAAAAATTATTTT
1 AAAAATTAAAAAATAATTTT
*
16643 AAAAATTAAATAAGTAATTTT
1 AAAAATTAAA-AAATAATTTT
16664 TTAAAAAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (20 bp):
AAAAATTAAAAAATAATTTT
Found at i:16678 original size:23 final size:24
Alignment explanation
Indices: 16634--16678 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
16624 AAAATTAAAA
*
16634 AATTATTTTAAAAATTAAATAAGT
1 AATTATTTTAAAAAATAAATAAGT
*
16658 AATT-TTTTAAAAAATATATAA
1 AATTATTTTAAAAAATAAATAA
16679 AAAAATTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 15 0.79
24 4 0.21
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (24 bp):
AATTATTTTAAAAAATAAATAAGT
Found at i:16686 original size:24 final size:23
Alignment explanation
Indices: 16629--16682 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
16619 GCCAAAAAAT
*
16629 TAAAAAATTATTTTAAAAATTAAA
1 TAAAAAATT-TTTTAAAAAATAAA
** *
16653 TAAGTAATTTTTTAAAAAATATA
1 TAAAAAATTTTTTAAAAAATAAA
16676 TAAAAAA
1 TAAAAAA
16683 ATTTATATCA
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
23 17 0.71
24 7 0.29
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (23 bp):
TAAAAAATTTTTTAAAAAATAAA
Found at i:16695 original size:10 final size:10
Alignment explanation
Indices: 16681--16723 Score: 52
Period size: 10 Copynumber: 4.4 Consensus size: 10
16671 ATATATAAAA
*
16681 AAATTTATAT
1 AAATTAATAT
*
16691 CAATTAATAT
1 AAATTAATAT
16701 AAATTAATAT
1 AAATTAATAT
*
16711 ATATTAAT-T
1 AAATTAATAT
16720 AAAT
1 AAAT
16724 ATTAATTTAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
9 4 0.14
10 24 0.86
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (10 bp):
AAATTAATAT
Found at i:16700 original size:24 final size:24
Alignment explanation
Indices: 16673--16721 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
16663 TTTAAAAAAT
*
16673 ATATAAAAAAATTTATATCAATTA
1 ATATAAAAAAATATATATCAATTA
** *
16697 ATATAAATTAATATATATTAATTA
1 ATATAAAAAAATATATATCAATTA
16721 A
1 A
16722 ATATTAATTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (24 bp):
ATATAAAAAAATATATATCAATTA
Found at i:16729 original size:21 final size:22
Alignment explanation
Indices: 16703--16755 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 22
16693 ATTAATATAA
*
16703 ATTAATATATATTA-ATTAAAT
1 ATTAATATATATTATATCAAAT
*
16724 ATTAATTTA-ATTATATCAAAT
1 ATTAATATATATTATATCAAAT
* *
16745 ATAAATCTATA
1 ATTAATATATA
16756 CGTACCAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
20 4 0.15
21 21 0.81
22 1 0.04
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (22 bp):
ATTAATATATATTATATCAAAT
Found at i:17386 original size:33 final size:32
Alignment explanation
Indices: 17323--17392 Score: 79
Period size: 33 Copynumber: 2.2 Consensus size: 32
17313 AATGAATATG
*
17323 ATAAACAAAATTAAAAAAAAAGAAAGATTTTT
1 ATAAAAAAAATTAAAAAAAAAGAAAGATTTTT
* * *
17355 TTAAAAAAAATTTATAAAAAAAA-TAATATTTTT
1 ATAAAAAAAA-TTA-AAAAAAAAGAAAGATTTTT
17388 ATAAA
1 ATAAA
17393 TGGTAGTACA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
32 8 0.26
33 15 0.48
34 8 0.26
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.31
Consensus pattern (32 bp):
ATAAAAAAAATTAAAAAAAAAGAAAGATTTTT
Found at i:18334 original size:19 final size:18
Alignment explanation
Indices: 18310--18369 Score: 67
Period size: 19 Copynumber: 3.5 Consensus size: 18
18300 ATCCATACAA
18310 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGT-T
18329 TGTATCGATAC--AA---
1 TGTATCGATACATAAGTT
18342 TGTATCGATACATAAGTTT
1 TGTATCGATACATAAG-TT
18361 TGTATCGAT
1 TGTATCGAT
18370 TCAATGTATC
Statistics
Matches: 35, Mismatches: 0, Indels: 12
0.74 0.00 0.26
Matches are distributed among these distances:
13 11 0.31
15 2 0.06
17 2 0.06
19 20 0.57
ACGTcount: A:0.32, C:0.12, G:0.18, T:0.38
Consensus pattern (18 bp):
TGTATCGATACATAAGTT
Found at i:18340 original size:32 final size:32
Alignment explanation
Indices: 18296--18379 Score: 141
Period size: 32 Copynumber: 2.6 Consensus size: 32
18286 TTTCAATGAT
*
18296 TTGTATCCATACAATGTATCGATACATAAGTG
1 TTGTATCGATACAATGTATCGATACATAAGTG
*
18328 TTGTATCGATACAATGTATCGATACATAAGTT
1 TTGTATCGATACAATGTATCGATACATAAGTG
*
18360 TTGTATCGATTCAATGTATC
1 TTGTATCGATACAATGTATC
18380 ACTACAAAGC
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 49 1.00
ACGTcount: A:0.32, C:0.14, G:0.15, T:0.38
Consensus pattern (32 bp):
TTGTATCGATACAATGTATCGATACATAAGTG
Found at i:18347 original size:13 final size:13
Alignment explanation
Indices: 18329--18353 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
18319 ACATAAGTGT
18329 TGTATCGATACAA
1 TGTATCGATACAA
18342 TGTATCGATACA
1 TGTATCGATACA
18354 TAAGTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:18443 original size:13 final size:13
Alignment explanation
Indices: 18425--18449 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
18415 ATTACTCAAA
18425 TGTATCGATACAT
1 TGTATCGATACAT
18438 TGTATCGATACA
1 TGTATCGATACA
18450 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:18500 original size:52 final size:52
Alignment explanation
Indices: 18458--18586 Score: 204
Period size: 52 Copynumber: 2.5 Consensus size: 52
18448 CACTGATCTT
*
18458 TGTATCGATACATGCAGGCAAATTTGTCCAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
* ** * *
18510 TGTATCAATACATATAGGCCAATTTGCCCAGATGTATCGGTACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
18562 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
18587 TAAATATTTC
Statistics
Matches: 67, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
Found at i:22130 original size:20 final size:20
Alignment explanation
Indices: 22105--22156 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 20
22095 ATGGAAAAAT
*
22105 TGTATCGATACATAAGTAAA
1 TGTATCGATACATAACTAAA
* * **
22125 TGTATCAATATATTTCTAAA
1 TGTATCGATACATAACTAAA
22145 TGTATCGATACA
1 TGTATCGATACA
22157 ACTTACTTTG
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.37
Consensus pattern (20 bp):
TGTATCGATACATAACTAAA
Found at i:32495 original size:17 final size:17
Alignment explanation
Indices: 32467--32502 Score: 56
Period size: 16 Copynumber: 2.1 Consensus size: 17
32457 GAAAAAGTTG
32467 AAAAATCAAAAATA-AA
1 AAAAATCAAAAATAGAA
32483 AAAAATCAAAAAATAGAA
1 AAAAATC-AAAAATAGAA
32501 AA
1 AA
32503 GTAAAAACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 7 0.39
17 7 0.39
18 4 0.22
ACGTcount: A:0.81, C:0.06, G:0.03, T:0.11
Consensus pattern (17 bp):
AAAAATCAAAAATAGAA
Found at i:44367 original size:20 final size:20
Alignment explanation
Indices: 44304--44368 Score: 51
Period size: 21 Copynumber: 3.1 Consensus size: 20
44294 TTCTTCTCTC
* *
44304 CTCCTCCTGTCATCCCCCCT
1 CTCCTCCTATCATCCCTCCT
** *
44324 CTCTCTATTATC-TCTCCTGTCT
1 CTC-CTCCTATCATC-CCT-CCT
44346 CTCCTCCTATCATCCCTCCT
1 CTCCTCCTATCATCCCTCCT
44366 CTC
1 CTC
44369 TCTTCTTTCT
Statistics
Matches: 33, Mismatches: 8, Indels: 8
0.67 0.16 0.16
Matches are distributed among these distances:
20 10 0.30
21 16 0.48
22 7 0.21
ACGTcount: A:0.08, C:0.51, G:0.03, T:0.38
Consensus pattern (20 bp):
CTCCTCCTATCATCCCTCCT
Found at i:49800 original size:2 final size:2
Alignment explanation
Indices: 49789--49826 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
49779 TTGTTCCAAT
49789 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
49827 GAAGATAACA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 34 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:50261 original size:26 final size:26
Alignment explanation
Indices: 50229--50278 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
50219 GGAAAGAAAC
*
50229 TTCCAAAATCCAAATGAAAGAACATT
1 TTCCAAAACCCAAATGAAAGAACATT
*
50255 TTCCAAACCCCAAATGAAAGAACA
1 TTCCAAAACCCAAATGAAAGAACA
50279 AAACCCCAGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.50, C:0.24, G:0.08, T:0.18
Consensus pattern (26 bp):
TTCCAAAACCCAAATGAAAGAACATT
Found at i:51541 original size:22 final size:21
Alignment explanation
Indices: 51503--51548 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 21
51493 ATGTGTATAA
*
51503 ATATAAAATATGTATATTAAT
1 ATATAAAATATGTATATAAAT
*
51524 ATATAAATTATTGTATATAAAT
1 ATATAAAATA-TGTATATAAAT
51546 ATA
1 ATA
51549 CGATGTATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 9 0.41
22 13 0.59
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.43
Consensus pattern (21 bp):
ATATAAAATATGTATATAAAT
Found at i:51850 original size:32 final size:33
Alignment explanation
Indices: 51787--51851 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
51777 ATTGAAAAAA
51787 AAAAAAACTAAAAAATTTTTACTTCTCTTTATT
1 AAAAAAACTAAAAAATTTTTACTTCTCTTTATT
* *
51820 AAAATAACTAAAAAATTTTTACTT-TTTTTATT
1 AAAAAAACTAAAAAATTTTTACTTCTCTTTATT
51852 TTCACTTACT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 7 0.23
33 23 0.77
ACGTcount: A:0.45, C:0.09, G:0.00, T:0.46
Consensus pattern (33 bp):
AAAAAAACTAAAAAATTTTTACTTCTCTTTATT
Found at i:55054 original size:30 final size:30
Alignment explanation
Indices: 55020--55080 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
55010 GGATGAAGAA
*
55020 GAATAAATAGAATCCCAAAGAAGTAAACGG
1 GAATAAATAGAATCCCAAAAAAGTAAACGG
*
55050 GAATAAATAGAATCCTAAAAAAGTAAACGG
1 GAATAAATAGAATCCCAAAAAAGTAAACGG
55080 G
1 G
55081 CTAAAGTACC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.54, C:0.11, G:0.20, T:0.15
Consensus pattern (30 bp):
GAATAAATAGAATCCCAAAAAAGTAAACGG
Found at i:56186 original size:20 final size:20
Alignment explanation
Indices: 56141--56193 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
56131 TGAAGTGAAA
*
56141 TGTATCGATACATGGGACAT
1 TGTATCGATACATGAGACAT
*
56161 TATATCGATACATGAAGA-AT
1 TGTATCGATACATG-AGACAT
*
56181 TGTATCAATACAT
1 TGTATCGATACAT
56194 TATGCCCAAC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 26 0.93
21 2 0.07
ACGTcount: A:0.38, C:0.13, G:0.17, T:0.32
Consensus pattern (20 bp):
TGTATCGATACATGAGACAT
Found at i:60131 original size:14 final size:13
Alignment explanation
Indices: 60106--60131 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
60096 AACTATCTAT
60106 TTTTCATCAAAAA
1 TTTTCATCAAAAA
60119 TTTTCATCAAAAA
1 TTTTCATCAAAAA
60132 CAGATATTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.38
Consensus pattern (13 bp):
TTTTCATCAAAAA
Found at i:62535 original size:20 final size:19
Alignment explanation
Indices: 62510--62580 Score: 72
Period size: 20 Copynumber: 3.6 Consensus size: 19
62500 ATCCAGATGC
* *
62510 ATCGATACATTATGACTTGT
1 ATCGATACATGATCA-TTGT
*
62530 ATCGATACATGCTCATTGT
1 ATCGATACATGATCATTGT
*
62549 ATCGATACA-CACTCAATTGT
1 ATCGATACATGA-TC-ATTGT
62569 ATCGATACATGA
1 ATCGATACATGA
62581 AACTGGCAGT
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
19 15 0.36
20 26 0.62
21 1 0.02
ACGTcount: A:0.32, C:0.20, G:0.14, T:0.34
Consensus pattern (19 bp):
ATCGATACATGATCATTGT
Found at i:62550 original size:19 final size:20
Alignment explanation
Indices: 62526--62579 Score: 83
Period size: 19 Copynumber: 2.8 Consensus size: 20
62516 ACATTATGAC
62526 TTGTATCGATACATGCTC-A
1 TTGTATCGATACATGCTCAA
**
62545 TTGTATCGATACACACTCAA
1 TTGTATCGATACATGCTCAA
62565 TTGTATCGATACATG
1 TTGTATCGATACATG
62580 AAACTGGCAG
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 16 0.53
20 14 0.47
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (20 bp):
TTGTATCGATACATGCTCAA
Found at i:62637 original size:20 final size:20
Alignment explanation
Indices: 62608--62660 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
62598 CTAAGCGAAA
* *
62608 TGTATTGATACATG-GGACAG
1 TGTATCGATACATGAAGA-AG
*
62628 TGTATCGATACATGAAGAAT
1 TGTATCGATACATGAAGAAG
62648 TGTATCGATACAT
1 TGTATCGATACAT
62661 TATGCCCAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 27 0.93
21 2 0.07
ACGTcount: A:0.34, C:0.11, G:0.23, T:0.32
Consensus pattern (20 bp):
TGTATCGATACATGAAGAAG
Found at i:66144 original size:24 final size:24
Alignment explanation
Indices: 66112--66158 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
66102 AGTGCAAGCT
66112 AGTGGAAGGGTTTTCATTATACTA
1 AGTGGAAGGGTTTTCATTATACTA
66136 AGTGGAAGGGTTTTCATTATACT
1 AGTGGAAGGGTTTTCATTATACT
66159 GAAGCCAGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.28, C:0.09, G:0.26, T:0.38
Consensus pattern (24 bp):
AGTGGAAGGGTTTTCATTATACTA
Found at i:66948 original size:15 final size:15
Alignment explanation
Indices: 66923--66960 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
66913 GAGGAATATG
66923 AAAAGTTTTATTTCGC
1 AAAA-TTTTATTTCGC
66939 AAAATTTTATTTCGC
1 AAAATTTTATTTCGC
66954 AAAATTT
1 AAAATTT
66961 AAAAAATCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 18 0.82
16 4 0.18
ACGTcount: A:0.37, C:0.11, G:0.08, T:0.45
Consensus pattern (15 bp):
AAAATTTTATTTCGC
Found at i:71343 original size:20 final size:21
Alignment explanation
Indices: 71318--71370 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
71308 GTCGATACAT
*
71318 TGTATCGATACATG-ACCA-AA
1 TGTATCGATACATGCA-AAGAA
*
71338 TGTATCGATACTTGCAAAGAA
1 TGTATCGATACATGCAAAGAA
71359 TGTATCGATACA
1 TGTATCGATACA
71371 GGTGATTGGC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 14 0.50
21 14 0.50
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (21 bp):
TGTATCGATACATGCAAAGAA
Found at i:71436 original size:19 final size:19
Alignment explanation
Indices: 71412--71538 Score: 128
Period size: 19 Copynumber: 7.6 Consensus size: 19
71402 CTTAACTGTT
71412 TGTATCGATACATACAAGA
1 TGTATCGATACATACAAGA
71431 TGTATCG----ATAC-A-A
1 TGTATCGATACATACAAGA
71444 TGTATCGATACATACAAGA
1 TGTATCGATACATACAAGA
71463 TGTATCG----ATAC-A-A
1 TGTATCGATACATACAAGA
71476 TGTATCGATACATACAAGA
1 TGTATCGATACATACAAGA
71495 TGTATCG----ATAC-A-A
1 TGTATCGATACATACAAGA
71508 TGTATCGATACATACAAGA
1 TGTATCGATACATACAAGA
71527 TGTATCGATACA
1 TGTATCGATACA
71539 ATGTATCGAT
Statistics
Matches: 90, Mismatches: 0, Indels: 36
0.71 0.00 0.29
Matches are distributed among these distances:
13 24 0.27
14 3 0.03
15 12 0.13
17 12 0.13
18 3 0.03
19 36 0.40
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (19 bp):
TGTATCGATACATACAAGA
Found at i:71448 original size:13 final size:13
Alignment explanation
Indices: 71430--71551 Score: 82
Period size: 13 Copynumber: 8.0 Consensus size: 13
71420 TACATACAAG
71430 ATGTATCGATACA
1 ATGTATCGATACA
71443 ATGTATCGATACATACAA
1 ATGTATCG----ATAC-A
71461 GATGTATCGATACA
1 -ATGTATCGATACA
71475 ATGTATCGATACATACAA
1 ATGTATCG----ATAC-A
71493 GATGTATCGATACA
1 -ATGTATCGATACA
71507 ATGTATCGATACATACAA
1 ATGTATCG----ATAC-A
71525 GATGTATCGATACA
1 -ATGTATCGATACA
71539 ATGTATCGATACA
1 ATGTATCGATACA
71552 TGACCAAATT
Statistics
Matches: 91, Mismatches: 0, Indels: 36
0.72 0.00 0.28
Matches are distributed among these distances:
13 37 0.41
14 3 0.03
15 12 0.13
17 12 0.13
18 3 0.03
19 24 0.26
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.29
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:71453 original size:32 final size:32
Alignment explanation
Indices: 71412--71569 Score: 282
Period size: 32 Copynumber: 4.9 Consensus size: 32
71402 CTTAACTGTT
71412 TGTATCGATACATACAAGATGTATCGATACAA
1 TGTATCGATACATACAAGATGTATCGATACAA
71444 TGTATCGATACATACAAGATGTATCGATACAA
1 TGTATCGATACATACAAGATGTATCGATACAA
71476 TGTATCGATACATACAAGATGTATCGATACAA
1 TGTATCGATACATACAAGATGTATCGATACAA
71508 TGTATCGATACATACAAGATGTATCGATACAA
1 TGTATCGATACATACAAGATGTATCGATACAA
71540 TGTATCGATACATGACCAA-ATTGTATCGAT
1 TGTATCGATACAT-A-CAAGA-TGTATCGAT
71570 GCATTGGCTT
Statistics
Matches: 123, Mismatches: 0, Indels: 4
0.97 0.00 0.03
Matches are distributed among these distances:
32 109 0.89
33 2 0.02
34 12 0.10
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.29
Consensus pattern (32 bp):
TGTATCGATACATACAAGATGTATCGATACAA
Found at i:80179 original size:13 final size:13
Alignment explanation
Indices: 80161--80185 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80151 ATAATGCACA
80161 GTATCGATACATT
1 GTATCGATACATT
80174 GTATCGATACAT
1 GTATCGATACAT
80186 GACCAAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:80198 original size:20 final size:21
Alignment explanation
Indices: 80173--80225 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
80163 ATCGATACAT
*
80173 TGTATCGATACATG-ACCA-AA
1 TGTATCGATACATGCA-AAGAA
*
80193 TGTATCGATACTTGCAAAGAA
1 TGTATCGATACATGCAAAGAA
80214 TGTATCGATACA
1 TGTATCGATACA
80226 GGTGATTGGC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 14 0.50
21 14 0.50
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (21 bp):
TGTATCGATACATGCAAAGAA
Found at i:83062 original size:147 final size:149
Alignment explanation
Indices: 82897--83188 Score: 399
Period size: 147 Copynumber: 2.0 Consensus size: 149
82887 ATCTTCGACG
* * *
82897 TAAAAGTACTCGATACCCCTAAAGAACTTAAAAAGGATAATAGATGGGATGAACCTATCCTTAAT
1 TAAAAGTACTCGATACCCCTAAAGAACTTAAAAAGGATAATAGATGAGACGAACCTATCCTAAAT
* *
82962 ATCTACCTTCGGCA-AAAAAAGAACCCGATGATAACCTAAGACTCGATTCTAAAAAATTATG-AA
66 ATCTACCTTCGACATAAAAAAGAACCCGATGACAACCTAAGACTCGATTCTAAAAAATTATGAAA
83025 ATGCCCCTAGGGGATGCCT
131 ATGCCCCTAGGGGATGCCT
* * *
83044 TAAAAGTACTTGATACCCCTAAAGGACTTGAAAAGGATAATAGATGAGACGAACCTATCCTAAAT
1 TAAAAGTACTCGATACCCCTAAAGAACTTAAAAAGGATAATAGATGAGACGAACCTATCCTAAAT
* ** * * * * * * *
83109 ATCTACCTTCGATATAAAAGCGGACTCGGTGACAACTTAGGATTCGGTTCTAAAAAATTATGAAA
66 ATCTACCTTCGACATAAAAAAGAACCCGATGACAACCTAAGACTCGATTCTAAAAAATTATGAAA
*
83174 ATGCTCCTAGGGGAT
131 ATGCCCCTAGGGGAT
83189 ATATTCGACG
Statistics
Matches: 124, Mismatches: 19, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
147 71 0.57
148 37 0.30
149 16 0.13
ACGTcount: A:0.39, C:0.19, G:0.18, T:0.24
Consensus pattern (149 bp):
TAAAAGTACTCGATACCCCTAAAGAACTTAAAAAGGATAATAGATGAGACGAACCTATCCTAAAT
ATCTACCTTCGACATAAAAAAGAACCCGATGACAACCTAAGACTCGATTCTAAAAAATTATGAAA
ATGCCCCTAGGGGATGCCT
Found at i:84811 original size:179 final size:182
Alignment explanation
Indices: 84505--84850 Score: 486
Period size: 180 Copynumber: 1.9 Consensus size: 182
84495 CAATCACACT
* *
84505 TTTTTTTAAAAAAATTAATTTTAGAGAAATTGAATTTTTCTAAATTTTTAAATTTAACTACTAAA
1 TTTTTTTAAAAAAATTAATTTTAGAGAAACTGAATTTTTCTAAATTATTAAATTTAACTACTAAA
* * * *
84570 TTTCTAAAATTATGTTTCGTACCTGATGGAAAACCAAGGGATACGAAAGGTGTTAAAAAAATTTC
66 TTTCGAAAATTATGTTTCATACCTGATGAAAAACCAAGGGATACGAAAGGTGTTAAAAAATTTTC
* * * *
84635 ATACCACTACGAAAAACTATAGGGATTTGAAAACATAAATGATCACAAATTC
131 ATACCACTACAAAAAACCATAGGAATATGAAAACATAAATGATCACAAATTC
* *
84687 TTTTTTT-AAAATATTAA-TTTAG-GAAAACTGAATTTTTCTAAATTATTAAATTTAACTTC-AA
1 TTTTTTTAAAAAAATTAATTTTAGAG-AAACTGAATTTTTCTAAATTATTAAATTTAACTACTAA
* * *
84748 ATTTCGAAAATTATGTTTCATGCCTGATGAAAAAAACCAGGGGATATGAAAGGTGTT-AAAAATT
65 ATTTCGAAAATTATGTTTCATACCTGATG--AAAAACCAAGGGATACGAAAGGTGTTAAAAAATT
*
84812 TTCATACCCCTACAAAAAACCATAGGAATATGAAAACAT
128 TTCATACCACTACAAAAAACCATAGGAATATGAAAACAT
84851 GACTCGAGTA
Statistics
Matches: 145, Mismatches: 16, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
179 29 0.20
180 77 0.53
181 32 0.22
182 7 0.05
ACGTcount: A:0.43, C:0.11, G:0.12, T:0.34
Consensus pattern (182 bp):
TTTTTTTAAAAAAATTAATTTTAGAGAAACTGAATTTTTCTAAATTATTAAATTTAACTACTAAA
TTTCGAAAATTATGTTTCATACCTGATGAAAAACCAAGGGATACGAAAGGTGTTAAAAAATTTTC
ATACCACTACAAAAAACCATAGGAATATGAAAACATAAATGATCACAAATTC
Found at i:85752 original size:23 final size:22
Alignment explanation
Indices: 85722--85784 Score: 74
Period size: 23 Copynumber: 2.8 Consensus size: 22
85712 TTGATTGCTA
* *
85722 TTTTGCTGGTGTTTGTTGGTATT
1 TTTTGCTGGT-TTTGTTGGCAGT
85745 TTTTGCTGGTATTTGCTT-GCAGT
1 TTTTGCTGGT-TTTG-TTGGCAGT
85768 TTTTGCTGGTTTTGTTG
1 TTTTGCTGGTTTTGTTG
85785 CCGTTGCTTG
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
21 2 0.06
22 4 0.11
23 27 0.77
24 2 0.06
ACGTcount: A:0.05, C:0.08, G:0.29, T:0.59
Consensus pattern (22 bp):
TTTTGCTGGTTTTGTTGGCAGT
Found at i:85817 original size:33 final size:31
Alignment explanation
Indices: 85780--85849 Score: 79
Period size: 33 Copynumber: 2.1 Consensus size: 31
85770 TTGCTGGTTT
85780 TGTTGC-CGTTGCTTGTGGCTTGTTTGCTTGTGC
1 TGTTGCGCGTTGC-T-T-GCTTGTTTGCTTGTGC
*
85813 TGTTGCTGGCGTTGCTTGCTTGTTTTCTTGTGC
1 TGTTGC--GCGTTGCTTGCTTGTTTGCTTGTGC
85846 TGTT
1 TGTT
85850 TCATTGCTGG
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
33 25 0.76
34 1 0.03
35 1 0.03
36 6 0.18
ACGTcount: A:0.00, C:0.17, G:0.31, T:0.51
Consensus pattern (31 bp):
TGTTGCGCGTTGCTTGCTTGTTTGCTTGTGC
Found at i:85865 original size:33 final size:33
Alignment explanation
Indices: 85797--85873 Score: 84
Period size: 33 Copynumber: 2.3 Consensus size: 33
85787 GTTGCTTGTG
* * *
85797 GCTTGTTTGCTTGTGCTGTTGCTGGCGTTGCTT
1 GCTTGTTTTCTTGTGCTGTTGCTGGCGTGGATT
* *
85830 GCTTGTTTTCTTGTGCTGTTTCATTGC-TGGATT
1 GCTTGTTTTCTTGTGCTGTTGC-TGGCGTGGATT
85863 GCTTGCTTTTC
1 GCTTG-TTTTC
85874 GATGTTGCTA
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
33 29 0.78
34 8 0.22
ACGTcount: A:0.03, C:0.18, G:0.27, T:0.52
Consensus pattern (33 bp):
GCTTGTTTTCTTGTGCTGTTGCTGGCGTGGATT
Found at i:86610 original size:14 final size:14
Alignment explanation
Indices: 86593--86662 Score: 61
Period size: 14 Copynumber: 4.9 Consensus size: 14
86583 TAATGCAGGC
*
86593 AATGCTTGAAATGA
1 AATGCATGAAATGA
86607 AATGCATGAAATGA
1 AATGCATGAAATGA
* * *
86621 ACATTACGTAAAATG-
1 A-A-TGCATGAAATGA
* *
86636 CATGCATGAAATGT
1 AATGCATGAAATGA
86650 AATGCATGAAATG
1 AATGCATGAAATG
86663 CATGAAAATA
Statistics
Matches: 44, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
13 8 0.18
14 27 0.61
15 1 0.02
16 8 0.18
ACGTcount: A:0.44, C:0.10, G:0.20, T:0.26
Consensus pattern (14 bp):
AATGCATGAAATGA
Found at i:86619 original size:23 final size:23
Alignment explanation
Indices: 86571--86619 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
86561 GGCGTGAAAC
* *
86571 ATGCATGAAATGTAATGCAGGCA
1 ATGCATGAAATGAAATGCAGGAA
* *
86594 ATGCTTGAAATGAAATGCATGAA
1 ATGCATGAAATGAAATGCAGGAA
86617 ATG
1 ATG
86620 AACATTACGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.41, C:0.10, G:0.24, T:0.24
Consensus pattern (23 bp):
ATGCATGAAATGAAATGCAGGAA
Found at i:87684 original size:8 final size:8
Alignment explanation
Indices: 87649--87681 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
87639 ATGAAAAAGA
87649 ATTA-TTT
1 ATTATTTT
87656 ATTATTTT
1 ATTATTTT
87664 ATTATTTT
1 ATTATTTT
87672 ATT-TTTT
1 ATTATTTT
87679 ATT
1 ATT
87682 TTTAAAAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
7 11 0.44
8 14 0.56
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
ATTATTTT
Found at i:88563 original size:22 final size:24
Alignment explanation
Indices: 88538--88582 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
88528 TTTTGCTATA
88538 TTTCT-TGTTTTT-TCTATTTTTC
1 TTTCTCTGTTTTTCTCTATTTTTC
*
88560 TTTCTCTTTTTTTCTCTATTTTT
1 TTTCTCTGTTTTTCTCTATTTTT
88583 TTGTTGAGTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 5 0.25
23 6 0.30
24 9 0.45
ACGTcount: A:0.04, C:0.16, G:0.02, T:0.78
Consensus pattern (24 bp):
TTTCTCTGTTTTTCTCTATTTTTC
Found at i:88583 original size:12 final size:11
Alignment explanation
Indices: 88545--88584 Score: 53
Period size: 12 Copynumber: 3.5 Consensus size: 11
88535 ATATTTCTTG
88545 TTTTTTCTATT
1 TTTTTTCTATT
*
88556 TTTCTTTCTCTT
1 TTT-TTTCTATT
88568 TTTTTCTCTATT
1 TTTTT-TCTATT
88580 TTTTT
1 TTTTT
88585 GTTGAGTGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
11 5 0.20
12 20 0.80
ACGTcount: A:0.05, C:0.15, G:0.00, T:0.80
Consensus pattern (11 bp):
TTTTTTCTATT
Found at i:88772 original size:51 final size:52
Alignment explanation
Indices: 88712--88815 Score: 183
Period size: 52 Copynumber: 2.0 Consensus size: 52
88702 TTCCAAACAT
*
88712 TGAATTGCTGCCATGCACCC-ATGCTTTGTCATATTTTGCTTGGAAGTAACC
1 TGAATTGCTGCCATGCACCCAATGCTTTGTCATATTTTGCTTAGAAGTAACC
*
88763 TGAATTGCTGCCATGCGCCCAATGCTTTGTCATATTTTGCTTAGAAGTAACC
1 TGAATTGCTGCCATGCACCCAATGCTTTGTCATATTTTGCTTAGAAGTAACC
88815 T
1 T
88816 ACCTAAAGCC
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
51 19 0.38
52 31 0.62
ACGTcount: A:0.22, C:0.23, G:0.19, T:0.36
Consensus pattern (52 bp):
TGAATTGCTGCCATGCACCCAATGCTTTGTCATATTTTGCTTAGAAGTAACC
Found at i:88827 original size:51 final size:51
Alignment explanation
Indices: 88721--88827 Score: 135
Period size: 52 Copynumber: 2.1 Consensus size: 51
88711 TTGAATTGCT
* * ***
88721 GCCATGCACCCATGCTTTGTCATATTTTGCTTGGAAGTAACCTGAATTGCT
1 GCCATGCACCCATGCTTTGTCATATTTTGCTTAGAAGTAACCTGAACTAAA
* *
88772 GCCATGCGCCCAATGCTTTGTCATATTTTGCTTAGAAGTAACCT-ACCTAAA
1 GCCATGCACCC-ATGCTTTGTCATATTTTGCTTAGAAGTAACCTGAACTAAA
88823 GCCAT
1 GCCAT
88828 CATTTGGCTA
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
51 17 0.35
52 31 0.65
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.33
Consensus pattern (51 bp):
GCCATGCACCCATGCTTTGTCATATTTTGCTTAGAAGTAACCTGAACTAAA
Found at i:89468 original size:153 final size:155
Alignment explanation
Indices: 89124--89690 Score: 585
Period size: 153 Copynumber: 3.5 Consensus size: 155
89114 AGAGAAAGGA
* * * *
89124 AAATTTCAAGAAAAAAATTCAAAATTCATTGAAATGAATGAATTTTTGAAAATTGAATTAATAAG
1 AAATTTCAAG-AAAAAATTCAAAATTTATGGAAAT-AATGAATTTTTGAAAACTGAATTAATATG
* * * *
89189 AAATAAATAATAATATTTTATGAATTTTAAAATTAAAAACCAAGAAAAATTCTTCC-TGAAAAAA
64 AAATAAATAATAATATTTGATGAATTTT---A-T-AAAA-TAAGAAAAA-TC-CCCACGAAAAAA
* * * *
89253 TTTGCGGAGTAGAAAACTCCGTATTTCGAAAAAAAAG
121 TTTAC-GAGAAGAAAACTCTGTATTTCG-GAAAAAAG
* * *
89290 AAATTTCAAGGAAAAATTCAAAATTTATGGAAATAAGTGAATTTTTGAAAACTGAAATAATGTGA
1 AAATTTCAAGAAAAAATTCAAAATTTATGGAAATAA-TGAATTTTTGAAAACTGAATTAATATGA
* * * *
89355 AATAAATAATAATATTTTATGAATTTT-T-TAA-AA-AAAAATCCCCCCGAAGAAATTTACAGAG
65 AATAAATAATAATATTTGATGAATTTTATAAAATAAGAAAAATCCCCACGAAAAAATTTAC-GAG
*
89416 AAGAAAACTCTGTATTTCGGAAGAGAA-
129 AAGAAAACTCTGTATTTCGGAA-AAAAG
*
89443 AAATTTCAAGAAAAAATTCATAATTTATGGAAATAAATGAATTTTTGAAAACTGAATTAATATGA
1 AAATTTCAAGAAAAAATTCAAAATTTATGGAAAT-AATGAATTTTTGAAAACTGAATTAATATGA
**
89508 AATAAATAATAATATTTGATGAATTTTAAAAATAAAAAAATAAGAAAAATCCCCATTAAAAAATT
65 AATAAATAATAATATTTGATGAATTTT----AT---AAAATAAGAAAAATCCCCACGAAAAAATT
*
89573 TACGAGAA-AAAACTCTGCATTTC-GAAAAAATG
123 TACGAGAAGAAAACTCTGTATTTCGGAAAAAA-G
* * *
89605 AGAATTTCAAGGAAAAAAAT-AAAATTTATGAAAATGAATCAATTTTTGAAAACTGAATTAATAT
1 A-AATTTCAA-GAAAAAATTCAAAATTTATGGAAAT-AATGAATTTTTGAAAACTGAATTAATAT
89669 GAAATAAATAATAATATTTGAT
63 GAAATAAATAATAATATTTGAT
89691 TGTCGTAACG
Statistics
Matches: 348, Mismatches: 34, Indels: 41
0.82 0.08 0.10
Matches are distributed among these distances:
153 88 0.25
154 37 0.11
155 5 0.01
156 2 0.01
158 3 0.01
160 4 0.01
161 3 0.01
162 17 0.05
163 77 0.22
164 30 0.09
165 72 0.21
166 10 0.03
ACGTcount: A:0.51, C:0.07, G:0.11, T:0.30
Consensus pattern (155 bp):
AAATTTCAAGAAAAAATTCAAAATTTATGGAAATAATGAATTTTTGAAAACTGAATTAATATGAA
ATAAATAATAATATTTGATGAATTTTATAAAATAAGAAAAATCCCCACGAAAAAATTTACGAGAA
GAAAACTCTGTATTTCGGAAAAAAG
Found at i:89648 original size:18 final size:19
Alignment explanation
Indices: 89627--89662 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
89617 AAAAAAATAA
89627 AATTTATGAAAA-TGAATC
1 AATTTATGAAAACTGAATC
*
89645 AATTTTTGAAAACTGAAT
1 AATTTATGAAAACTGAAT
89663 TAATATGAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.47, C:0.06, G:0.11, T:0.36
Consensus pattern (19 bp):
AATTTATGAAAACTGAATC
Found at i:93935 original size:32 final size:32
Alignment explanation
Indices: 93888--94015 Score: 174
Period size: 32 Copynumber: 4.1 Consensus size: 32
93878 CGATATTGAG
93888 TTTAGA-AAGGTTGCCACCAACTTGTGTGGGC
1 TTTAGAGAAGGTTGCCACCAACTTGTGTGGGC
* *
93919 TTTAGAGAAGATTGCCACTAACTTGTGTGGGC
1 TTTAGAGAAGGTTGCCACCAACTTGTGTGGGC
*
93951 TTTAGAGAAGGTTGCTACCAACTTGTGTGGGC
1 TTTAGAGAAGGTTGCCACCAACTTGTGTGGGC
* **
93983 TTTAGA-AGGGTTGCCACTGAC-T-TGTGGGC
1 TTTAGAGAAGGTTGCCACCAACTTGTGTGGGC
94012 TTTA
1 TTTA
94016 AAAGGATGTC
Statistics
Matches: 87, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
29 11 0.13
30 1 0.01
31 17 0.20
32 58 0.67
ACGTcount: A:0.22, C:0.16, G:0.30, T:0.32
Consensus pattern (32 bp):
TTTAGAGAAGGTTGCCACCAACTTGTGTGGGC
Found at i:94226 original size:170 final size:170
Alignment explanation
Indices: 93978--94325 Score: 436
Period size: 170 Copynumber: 2.1 Consensus size: 170
93968 CCAACTTGTG
* * * *
93978 TGGGCTTT-AGAAGGGTTGCCACTGACTTGTGGGCTTTAAAAGGATGTCACTGATTTGTAGGTTT
1 TGGGCTTTGAGAAGGGTTGCCACTGACTTGTGGACTTTAAAAGGATGCCACTGACTTGTAGGTCT
* * * *
94042 CGAAAGGGTGCCACTAACTTGTGGG-TTTCGAAAGGGTGTCACTGACTTGTGGGCTTCGAA-AGG
66 CAAAAGGGTGCCACTAACTTGTGGGATTT-GAAAGGATGCCACTGACTTATGGGCTTCGAAGA-G
* * ***
94105 GTGCCACTAACTTGTGGGTTTTAAAAGGGTGCCACTGACTTA
129 ATGCCACTAACTTGTGGGCTTTAAAAGGACACCACTGACTTA
* * *
94147 TGGGCTTTGAG-AGAGGTTGCCACTGACTTGTGGACTTTGAAAGGGTGCCACTGACTTGT-GGGC
1 TGGGCTTTGAGAAG-GGTTGCCACTGACTTGTGGACTTTAAAAGGATGCCACTGACTTGTAGGTC
* *
94210 TCTAAAAGGTTGCCACTAACTTGTGGGATTTGAAAGGATGCCACTGACTTATGGGCTTTGAAGAG
65 TC-AAAAGGGTGCCACTAACTTGTGGGATTTGAAAGGATGCCACTGACTTATGGGCTTCGAAGAG
* * *
94275 ATGCCACTAACTTGTGGGCTTTGAAATGACACCACTGACTTG
129 ATGCCACTAACTTGTGGGCTTTAAAAGGACACCACTGACTTA
94317 TGGGCTTTG
1 TGGGCTTTG
94326 TTGAGATGAA
Statistics
Matches: 153, Mismatches: 21, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
169 14 0.09
170 135 0.88
171 4 0.03
ACGTcount: A:0.22, C:0.17, G:0.31, T:0.30
Consensus pattern (170 bp):
TGGGCTTTGAGAAGGGTTGCCACTGACTTGTGGACTTTAAAAGGATGCCACTGACTTGTAGGTCT
CAAAAGGGTGCCACTAACTTGTGGGATTTGAAAGGATGCCACTGACTTATGGGCTTCGAAGAGAT
GCCACTAACTTGTGGGCTTTAAAAGGACACCACTGACTTA
Found at i:94269 original size:28 final size:28
Alignment explanation
Indices: 93976--94325 Score: 366
Period size: 28 Copynumber: 12.4 Consensus size: 28
93966 TACCAACTTG
93976 TGTGGGCTTT-AGAAGGGTTGCCACTGACT
1 TGTGGGCTTTGA-AAGGG-TGCCACTGACT
* * * *
94005 TGTGGGCTTTAAAAGGATGTCACTGATT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
94033 TGTAGG-TTTCGAAAGGGTGCCACTAACT
1 TGTGGGCTTT-GAAAGGGTGCCACTGACT
*
94061 TGTGGG-TTTCGAAAGGGTGTCACTGACT
1 TGTGGGCTTT-GAAAGGGTGCCACTGACT
* *
94089 TGTGGGCTTCGAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
94117 TGTGGGTTTTAAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
94145 TATGGGCTTTGAGAGAGGTTGCCACTGACT
1 TGTGGGCTTTGA-A-AGGGTGCCACTGACT
*
94175 TGTGGACTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * *
94203 TGTGGGCTCTAAAAGGTTGCCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
94231 TGTGGGATTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
94259 TATGGGCTTTG-AAGAGATGCCACTAACT
1 TGTGGGCTTTGAAAG-GGTGCCACTGACT
* ***
94287 TGTGGGCTTTGAAATGACACCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
94315 TGTGGGCTTTG
1 TGTGGGCTTTG
94326 TTGAGATGAA
Statistics
Matches: 270, Mismatches: 44, Indels: 15
0.82 0.13 0.05
Matches are distributed among these distances:
27 6 0.02
28 219 0.81
29 20 0.07
30 25 0.09
ACGTcount: A:0.22, C:0.17, G:0.31, T:0.30
Consensus pattern (28 bp):
TGTGGGCTTTGAAAGGGTGCCACTGACT
Found at i:94321 original size:56 final size:57
Alignment explanation
Indices: 93912--94325 Score: 394
Period size: 56 Copynumber: 7.2 Consensus size: 57
93902 CACCAACTTG
* * * **
93912 TGTGGGCTTT-AGAGAAGATTGCCACTAACTTGTGTGGGCTTTAGAGAAGGTTGCTACCAACTT
1 TGTGGGCTTTGA-AG-AGGTTGCCACTAAC-T-TGTGGGCTTT-GA-AAGGATGCCACTGAC-T
* * * *
93975 GTGTGGGCTTTAGAAG-GGTTGCCACTGACTTGTGGGCTTTAAAAGGATGTCACTGATT
1 -TGTGGGCTTT-GAAGAGGTTGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
94033 TGTAGG-TTTCGAA-AGGGTGCCACTAACTTGTGGG-TTTCGAAAGGGTGTCACTGACT
1 TGTGGGCTTT-GAAGAGGTTGCCACTAACTTGTGGGCTTT-GAAAGGATGCCACTGACT
* * * * *
94089 TGTGGGCTTCGAA-AGGGTGCCACTAACTTGTGGGTTTTAAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAGAGGTTGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
94145 TATGGGCTTTGAGAGAGGTTGCCACTGACTTGTGGACTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGA-AGAGGTTGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * *
94203 TGTGGGCTCT-AAAAGGTTGCCACTAACTTGTGGGATTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAGAGGTTGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * **
94259 TATGGGCTTTGAAGA-GATGCCACTAACTTGTGGGCTTTGAAATGACACCACTGACT
1 TGTGGGCTTTGAAGAGGTTGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
94315 TGTGGGCTTTG
1 TGTGGGCTTTG
94326 TTGAGATGAA
Statistics
Matches: 298, Mismatches: 43, Indels: 26
0.81 0.12 0.07
Matches are distributed among these distances:
55 3 0.01
56 188 0.63
57 15 0.05
58 47 0.16
59 9 0.03
60 1 0.00
61 10 0.03
62 1 0.00
63 11 0.04
64 10 0.03
65 2 0.01
66 1 0.00
ACGTcount: A:0.22, C:0.17, G:0.31, T:0.30
Consensus pattern (57 bp):
TGTGGGCTTTGAAGAGGTTGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
Found at i:107425 original size:57 final size:59
Alignment explanation
Indices: 107323--107437 Score: 189
Period size: 57 Copynumber: 2.0 Consensus size: 59
107313 GATTGGAGTA
* *
107323 TCCCTGATAAATAAAACTTTTGGCATTTTTTATAAAGAAAATTGATATGAATGAGGGCT
1 TCCCTGATAAATAAAACTTTTGACATTTTTTATAAAGAAAATTGATATGAATAAGGGCT
*
107382 TCCC-GATAAATAAAATTTTTGAC-TTTTTTATAAAGAAAATTGATATGAATAAGGGC
1 TCCCTGATAAATAAAACTTTTGACATTTTTTATAAAGAAAATTGATATGAATAAGGGC
107438 GAAAAAAGAT
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
57 32 0.60
58 17 0.32
59 4 0.08
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.36
Consensus pattern (59 bp):
TCCCTGATAAATAAAACTTTTGACATTTTTTATAAAGAAAATTGATATGAATAAGGGCT
Found at i:113823 original size:19 final size:19
Alignment explanation
Indices: 113799--113839 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
113789 CGATATATCC
*
113799 ATTTATTTAATTTATTTGG
1 ATTTATTTAATTTAATTGG
*
113818 ATTTATTTTATTTAATTGG
1 ATTTATTTAATTTAATTGG
113837 ATT
1 ATT
113840 GGGCCAATCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.27, C:0.00, G:0.10, T:0.63
Consensus pattern (19 bp):
ATTTATTTAATTTAATTGG
Found at i:117757 original size:49 final size:49
Alignment explanation
Indices: 117572--117818 Score: 275
Period size: 49 Copynumber: 5.0 Consensus size: 49
117562 TAAAGAAGTT
* *
117572 AAGCCTATAAAGTCAAGTCCAGATTAG-TGGGCA-TCTGTATA-AGGAGGTC
1 AAGCCTATAGAGTCAAGTCCACATTAGCT-GGCACT-TGTATAGA-GAGGTC
* * *
117621 AAGCCTTATAGAGTCAATTCCACATTAGCTGGCACCTGTATAGGGAGGTC
1 AAGCC-TATAGAGTCAAGTCCACATTAGCTGGCACTTGTATAGAGAGGTC
* * * * *
117671 AAGCCTTATAAAATACAAGTCCACATTAGCTGACACTTTTATAGAGAGTTC
1 AAGCC-TATAGAGT-CAAGTCCACATTAGCTGGCACTTGTATAGAGAGGTC
*
117722 AAGCCTATAGAGTCAAGTCCACATTAGCTGGCACTTCTATAGAGAGGTC
1 AAGCCTATAGAGTCAAGTCCACATTAGCTGGCACTTGTATAGAGAGGTC
* * * * *
117771 AAGCCTACAGAGTTAAGTCCATATGAGCTGGCACTTGTATAAAGAGGT
1 AAGCCTATAGAGTCAAGTCCACATTAGCTGGCACTTGTATAGAGAGGT
117819 TGTAGACACC
Statistics
Matches: 169, Mismatches: 24, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
49 80 0.47
50 53 0.31
51 36 0.21
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.26
Consensus pattern (49 bp):
AAGCCTATAGAGTCAAGTCCACATTAGCTGGCACTTGTATAGAGAGGTC
Found at i:118045 original size:20 final size:20
Alignment explanation
Indices: 118017--118091 Score: 96
Period size: 20 Copynumber: 3.8 Consensus size: 20
118007 TTTTACCCAG
118017 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * * *
118037 ATATATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
* *
118057 ATGTATCGATATATTCTTCA
1 ATGTATCGATACATTTTTCA
118077 ATGTATCGATACATT
1 ATGTATCGATACATT
118092 ATGTCTTTTT
Statistics
Matches: 44, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.13, G:0.12, T:0.41
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:118077 original size:40 final size:39
Alignment explanation
Indices: 118017--118094 Score: 120
Period size: 40 Copynumber: 2.0 Consensus size: 39
118007 TTTTACCCAG
*
118017 ATGTATCGATACATTTTTCAATATATCGATACATGTATGA
1 ATGTATCGATACATTCTTCAATATATCGATACAT-TATGA
* *
118057 ATGTATCGATATATTCTTCAATGTATCGATACATTATG
1 ATGTATCGATACATTCTTCAATATATCGATACATTATG
118095 TCTTTTTACC
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
39 4 0.11
40 31 0.89
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.41
Consensus pattern (39 bp):
ATGTATCGATACATTCTTCAATATATCGATACATTATGA
Found at i:118127 original size:16 final size:16
Alignment explanation
Indices: 118108--118138 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
118098 TTTTACCTAG
118108 ATGTATCGATACATCA
1 ATGTATCGATACATCA
118124 ATGTATCGATACATC
1 ATGTATCGATACATC
118139 TAGTTAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.32
Consensus pattern (16 bp):
ATGTATCGATACATCA
Found at i:131233 original size:21 final size:21
Alignment explanation
Indices: 131207--131263 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
131197 AAAAAAATTA
131207 AATGTATCGATACATTTGTAG
1 AATGTATCGATACATTTGTAG
*
131228 AATGTATCGATACATTTGTGG
1 AATGTATCGATACATTTGTAG
131249 AATGTATCGATACAT
1 AATGTATCGATACAT
131264 CCTACAAATG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (21 bp):
AATGTATCGATACATTTGTAG
Found at i:131343 original size:19 final size:19
Alignment explanation
Indices: 131319--131386 Score: 85
Period size: 19 Copynumber: 3.9 Consensus size: 19
131309 AATTCAACAA
131319 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
131338 TTTGTATCGATAC--AA--
1 TTTGTATCGATACATAAGT
131353 --TGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
*
131370 ATTGTATCGATACATAA
1 TTTGTATCGATACATAA
131387 TTAGCTACTG
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 2 0.05
19 28 0.65
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:131358 original size:13 final size:13
Alignment explanation
Indices: 131340--131364 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
131330 ACATAAGTTT
131340 TGTATCGATACAA
1 TGTATCGATACAA
131353 TGTATCGATACA
1 TGTATCGATACA
131365 TAAGTATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:131362 original size:32 final size:32
Alignment explanation
Indices: 131321--131383 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
131311 TTCAACAATT
*
131321 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
131353 TGTATCGATACATAAGTATTGTATCGATACA
1 TGTATCGATACATAAGTATTGTATCGATACA
131384 TAATTAGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCGATACAA
Found at i:131444 original size:13 final size:13
Alignment explanation
Indices: 131426--131451 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
131416 CATTTTTCTG
131426 TGTATCGATACAT
1 TGTATCGATACAT
131439 TGTATCGATACAT
1 TGTATCGATACAT
131452 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:131448 original size:33 final size:33
Alignment explanation
Indices: 131406--131472 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
131396 GCCAAGGAAA
***
131406 TGTATCGATACATTTTTCTGTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
*
131439 TGTATCGATACATGGATCTTTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
131472 T
1 T
131473 TGGAAATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.25, C:0.15, G:0.16, T:0.43
Consensus pattern (33 bp):
TGTATCGATACATGGATCTGTGTATCGATACAT
Found at i:133971 original size:28 final size:27
Alignment explanation
Indices: 133904--133972 Score: 95
Period size: 27 Copynumber: 2.5 Consensus size: 27
133894 CTTCACAATC
*
133904 GGGGATACTCCAACCCCGTTAATCATC
1 GGGGATACTCCAACCCCGTTAATCATA
*
133931 GGGGATACTCCAACCCCGTTATTTC-TAA
1 GGGGATACTCCAACCCCGTTA-ATCAT-A
133959 GGGGATACTCCAAC
1 GGGGATACTCCAAC
133973 TCCGGTTTTA
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
27 22 0.58
28 16 0.42
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.23
Consensus pattern (27 bp):
GGGGATACTCCAACCCCGTTAATCATA
Found at i:134052 original size:52 final size:53
Alignment explanation
Indices: 133959--134128 Score: 181
Period size: 52 Copynumber: 3.3 Consensus size: 53
133949 TTATTTCTAA
* * * * *
133959 GGGGATACTCCAACTCCGGTTTTA--TCGCTAAAACACTAATTTTTCCACAATC
1 GGGGATACTCCAACTCCGATTTTATTTC-CAAAAATACCAATTTTTCCATAATC
* * * *
134011 GGGGATACTCCAA-TCCTGGTTTTATTTTC-AAAATGCCAA-TTTTCCTTTAATC
1 GGGGATACTCCAACTCC-GATTTTATTTCCAAAAATACCAATTTTTCC-ATAATC
134063 GGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTT-CATAATC
1 GGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTTCCATAATC
*
134115 GAGGATACTCCAAC
1 GGGGATACTCCAAC
134129 CTCGTTATTT
Statistics
Matches: 100, Mismatches: 11, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
51 9 0.09
52 72 0.72
53 14 0.14
54 5 0.05
ACGTcount: A:0.29, C:0.24, G:0.13, T:0.34
Consensus pattern (53 bp):
GGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTTCCATAATC
Found at i:134148 original size:28 final size:28
Alignment explanation
Indices: 134112--134188 Score: 95
Period size: 28 Copynumber: 2.8 Consensus size: 28
134102 ATTTTTCATA
* * *
134112 ATCGAGGATACTCCAACCTCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
134140 ATCGGGGATACTCCAACCCCGTTACTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
134168 --CGAGGAGATACTCCAACCCCG
1 ATCG-GG-GATACTCCAACCCCG
134189 GCTTTATTCC
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
26 2 0.05
27 2 0.05
28 40 0.91
ACGTcount: A:0.25, C:0.34, G:0.18, T:0.23
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTACTTC
Found at i:134162 original size:212 final size:212
Alignment explanation
Indices: 133789--134195 Score: 577
Period size: 212 Copynumber: 1.9 Consensus size: 212
133779 TTATCAATTC
* * *
133789 TCCACAATCGAGGATATTCCAACTCCGATTTTATTTTCAAAACACTAATTTTCTATAATTGGGGA
1 TCCACAATCGAGGATACTCCAACTCCGATTTTATTTTCAAAACACCAATTTTCTATAATCGGGGA
* *
133854 TACTCTAACTCCGATTTTATTTCCAAAAAAACACCAATTTCTTCACAATCGGGGATACTCCAACC
66 TACTCCAACTCCGATTTTATTTCC-AAAAAACACCAATTTCTTCACAATCGAGGATACTCCAACC
* * * * *
133919 CCGTTAATCATCGGGGATACTCCAACCCCGTTATTTCTAAGGGGATACTCCAACTCCGGTTTTAT
130 CCGTTAATCATCGGGGATACTCCAACCCCGTTACTTCCAAGGAGATACTCCAACCCCGGCTTTAT
133984 CGCTAAAACACTAATTTT
195 CGCTAAAACACTAATTTT
* * ** *
134002 TCCACAATCGGGGATACTCCAA-TCCTGGTTTTATTTTCAAAATGCCAATTTTCCTTTAATCGGG
1 TCCACAATCGAGGATACTCCAACTCC-GATTTTATTTTCAAAACACCAATTTT-CTATAATCGGG
* *
134066 GATACTCCAACTCCGATTTTATTTCC-AAAAATACCAATTT-TTCATAATCGAGGATACTCCAAC
64 GATACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAAC
* * *
134129 CTCGTTATTTCATCGGGGATACTCCAACCCCGTTACTTCCGAGGAGATACTCCAACCCCGGCTTT
129 CCCGTTA-ATCATCGGGGATACTCCAACCCCGTTACTTCCAAGGAGATACTCCAACCCCGGCTTT
134194 AT
193 AT
134196 TCCCAAAATA
Statistics
Matches: 171, Mismatches: 20, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
211 27 0.16
212 68 0.40
213 42 0.25
214 34 0.20
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.32
Consensus pattern (212 bp):
TCCACAATCGAGGATACTCCAACTCCGATTTTATTTTCAAAACACCAATTTTCTATAATCGGGGA
TACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAACCC
CGTTAATCATCGGGGATACTCCAACCCCGTTACTTCCAAGGAGATACTCCAACCCCGGCTTTATC
GCTAAAACACTAATTTT
Found at i:134254 original size:107 final size:107
Alignment explanation
Indices: 134066--134267 Score: 255
Period size: 107 Copynumber: 1.9 Consensus size: 107
134056 TTTAATCGGG
* * * *
134066 GATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTTCATAATCGAGGATACTCCAACCT
1 GATACTCCAACCCCGACTTTATTTCCAAAAATACCAATTTCTCATAATCGAGGATACTCCAACCC
134131 CGTTATTTCATCGGGGATACTCCAACCCCGTTACTTCCGAGGA
66 CGTTATTTCA-CGGGGATACTCCAACCCCGTTACTTCCGAGGA
* * *** * *
134174 GATACTCCAACCCCGGCTTTA-TTCCCAAAATATTGATTTCTCATAATTGGGGATACTCCAACCC
1 GATACTCCAACCCCGACTTTATTTCCAAAAATACCAATTTCTCATAATCGAGGATACTCCAACCC
*
134238 CGTTATTTTCGA-GGGGATACTCCAATCCCG
66 CGTTA-TTTC-ACGGGGATACTCCAACCCCG
134268 ATTTTTTTTT
Statistics
Matches: 80, Mismatches: 12, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
107 57 0.71
108 22 0.28
109 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.14, T:0.30
Consensus pattern (107 bp):
GATACTCCAACCCCGACTTTATTTCCAAAAATACCAATTTCTCATAATCGAGGATACTCCAACCC
CGTTATTTCACGGGGATACTCCAACCCCGTTACTTCCGAGGA
Found at i:136434 original size:10 final size:10
Alignment explanation
Indices: 136380--136427 Score: 53
Period size: 11 Copynumber: 4.7 Consensus size: 10
136370 GGTCCTTTAC
136380 AAAAAAACAA
1 AAAAAAACAA
136390 AAAAAAAC-A
1 AAAAAAACAA
*
136399 AAAAAACCAA
1 AAAAAAACAA
*
136409 GAAAAAATAGAA
1 -AAAAAA-ACAA
136421 AAAAAAA
1 AAAAAAA
136428 AAGAAAAGGG
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
9 8 0.25
10 10 0.31
11 12 0.38
12 2 0.06
ACGTcount: A:0.85, C:0.08, G:0.04, T:0.02
Consensus pattern (10 bp):
AAAAAAACAA
Found at i:137716 original size:28 final size:29
Alignment explanation
Indices: 137647--138465 Score: 1063
Period size: 29 Copynumber: 28.5 Consensus size: 29
137637 TGTTCATCCC
*
137647 TTTCAAAGCTCACAAGTCAGTGGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* *
137676 TTTCAAAGCCCACGAGTCAGTGGCAC-CC
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
137704 TTTCAAAGCCCACAAGTCAGTGGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* * * *
137733 TTTCAAAGCCCATAAATTAGTGGCACTTT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* *
137762 TTTCAAAGCCCACAAGTTAGTGGCAC-CC
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
*
137790 TTTCAAAGCCCACAAGTCAGTGGCACTCC
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
137819 TTTCACAA-CCCACAAGTCAGTGGCACTCT
1 TTTCA-AAGCCCACAAGTCAGTGGCACTCT
* *
137848 TTTCAAAGCTCACAAATCAGTGGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
137877 TTTCAAAGCCCACAAGTCAGTGGCAC-C-
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* * * *
137904 CTTAAAAGCCCACAAATCTGTGGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
*
137933 TTTCAAAGCCCACAAGTCAGTGGCAC-CC
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* *
137961 TTTCAAAGCCCACAATTCAGTAGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
137990 TTTCAAAGCCCACAAGTCAGTGGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* * * *
138019 TTTCAAAGCCCATAAATCAGTGGCATTTT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* * *
138048 TTTTAAAGCCCACAAGTCAATGGCAC-CC
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
*
138076 TTTCAAAGCACACAAGTCAGTGGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* *
138105 TTTCAAAGCCCACAAGTTAGTGGCA-TCC
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* *
138133 TTTCAAAGCCCACAAGTTAGTGGCA-TCC
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* *
138161 TTTCAAAACCCACAAGTCAGTGGCAC-CC
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
138189 TTTCAAAGCCCACAAGTCAGTGGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* *
138218 TTTCAAAGCCCACAAGTTAGTGGCA-TCC
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* *
138246 TTTCAAAGCCCACAAGTCAGTGGTAC-CC
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
* *
138274 TTTCAAAACCCACAAGTCAGTGGCAC-CC
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
138302 TTTCAAAGCCCACAAGTCAGTGGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
** *
138331 TTTTGAAGCCCACAAGTCAGTGGCAC-CC
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
138359 TTTCAAAGCCCACAAGTCAGTGGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACTCT
**
138388 TTTCAAAGCCCACATGAGTTGGTGGCAACTCT
1 TTTCAAAGCCCACA--AGTCAGTGGC-ACTCT
**
138420 TTTCAAAGCCCACACGAGTTGGTGGCAACTCT
1 TTTCAAAGCCCACA--AGTCAGTGGC-ACTCT
138452 TTTCAAAGCCCACA
1 TTTCAAAGCCCACA
138466 CAAGTTGGTG
Statistics
Matches: 702, Mismatches: 72, Indels: 29
0.87 0.09 0.04
Matches are distributed among these distances:
27 22 0.03
28 286 0.41
29 334 0.48
30 2 0.00
31 8 0.01
32 50 0.07
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.24
Consensus pattern (29 bp):
TTTCAAAGCCCACAAGTCAGTGGCACTCT
Found at i:137732 original size:57 final size:57
Alignment explanation
Indices: 137647--138465 Score: 1099
Period size: 57 Copynumber: 14.2 Consensus size: 57
137637 TGTTCATCCC
* * * *
137647 TTTCAAAGCTCACAAGTCAGTGGCACTCTTTTCAAAGCCCACGAGTCAGTGGCAC-CC
1 TTTCAAAGCCCACAAGTCAGTGGCAC-CCTTTCAAAGCCCACAAGTCAGTGGCACTCT
* * * * *
137704 TTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCATAAATTAGTGGCACTTT
1 TTTCAAAGCCCACAAGTCAGTGGCAC-CCTTTCAAAGCCCACAAGTCAGTGGCACTCT
* *
137762 TTTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCC
1 TTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCT
* * *
137819 TTTCACAA-CCCACAAGTCAGTGGCACTCTTTTCAAAGCTCACAAATCAGTGGCACTCT
1 TTTCA-AAGCCCACAAGTCAGTGGCAC-CCTTTCAAAGCCCACAAGTCAGTGGCACTCT
* * *
137877 TTTCAAAGCCCACAAGTCAGTGGCACCC-TTAAAAGCCCACAAATCTGTGGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCT
* *
137933 TTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAATTCAGTAGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCT
* * * * *
137990 TTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCATAAATCAGTGGCATTTT
1 TTTCAAAGCCCACAAGTCAGTGGCAC-CCTTTCAAAGCCCACAAGTCAGTGGCACTCT
* * *
138048 TTTTAAAGCCCACAAGTCAATGGCACCCTTTCAAAGCACACAAGTCAGTGGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCT
* * * *
138105 TTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTTAGTGGCA-TCC
1 TTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCT
*
138161 TTTCAAAACCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCT
* * * *
138218 TTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGTAC-CC
1 TTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCT
*
138274 TTTCAAAACCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCT
**
138331 TTTTGAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCT
1 TTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCT
** * **
138388 TTTCAAAGCCCACATGAGTTGGTGGCAACTCTTTTCAAAGCCCACACGAGTTGGTGGCAACTCT
1 TTTCAAAGCCCACA--AGTCAGTGGC-AC-CCTTTCAAAGCCCACA--AGTCAGTGGC-ACTCT
138452 TTTCAAAGCCCACA
1 TTTCAAAGCCCACA
138466 CAAGTTGGTG
Statistics
Matches: 674, Mismatches: 73, Indels: 23
0.88 0.09 0.03
Matches are distributed among these distances:
56 155 0.23
57 341 0.51
58 126 0.19
59 8 0.01
60 2 0.00
61 15 0.02
63 8 0.01
64 19 0.03
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.24
Consensus pattern (57 bp):
TTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCT
Found at i:139070 original size:20 final size:20
Alignment explanation
Indices: 139042--139135 Score: 100
Period size: 20 Copynumber: 4.7 Consensus size: 20
139032 TTTTACCCAG
*
139042 ATGTATCGATACATTTTTTA
1 ATGTATCGATACATTTATTA
* * *
139062 ATATATCGATACATGTATGA
1 ATGTATCGATACATTTATTA
* *
139082 ATGTATCGATATATTCT-TCA
1 ATGTATCGATACATT-TATTA
* *
139102 ATGTATCGATACATTGAATA
1 ATGTATCGATACATTTATTA
139122 ATGTATCGATACAT
1 ATGTATCGATACAT
139136 CTAGTTAAAA
Statistics
Matches: 60, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
20 59 0.98
21 1 0.02
ACGTcount: A:0.35, C:0.12, G:0.13, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATTTATTA
Found at i:139109 original size:40 final size:40
Alignment explanation
Indices: 139042--139135 Score: 127
Period size: 40 Copynumber: 2.4 Consensus size: 40
139032 TTTTACCCAG
* * *
139042 ATGTATCGATACATTTTTTAATATATCGATACA-TGTATGA
1 ATGTATCGATACATTCTTCAATATATCGATACATTGAAT-A
* *
139082 ATGTATCGATATATTCTTCAATGTATCGATACATTGAATA
1 ATGTATCGATACATTCTTCAATATATCGATACATTGAATA
139122 ATGTATCGATACAT
1 ATGTATCGATACAT
139136 CTAGTTAAAA
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
40 43 0.91
41 4 0.09
ACGTcount: A:0.35, C:0.12, G:0.13, T:0.40
Consensus pattern (40 bp):
ATGTATCGATACATTCTTCAATATATCGATACATTGAATA
Found at i:145604 original size:43 final size:43
Alignment explanation
Indices: 145543--145728 Score: 194
Period size: 43 Copynumber: 4.1 Consensus size: 43
145533 TAAAGATGGA
145543 AAAGGTGCCAAGT-TGCTGATTCAAGGCCAGCTATATTGGACTT
1 AAAGGTGCCAA-TATGCTGATTCAAGGCCAGCTATATTGGACTT
* * *
145586 AAAGGTGCCAATGTGCTGATTCAAGGTCAGCTACATTGGACTTAAAT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGAC-T---T
* *
145633 ATGAAGGTGCCAATATGCTGATTTAAGGCCAGCGATATTGGACTT
1 A--AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* *
145678 AAAGGCAAGGTGCCAATATGCTGATTCAAGGCTAGCTATATTGGGCTT
1 --A---AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
145726 AAA
1 AAA
145729 AGGAGACGCC
Statistics
Matches: 120, Mismatches: 13, Indels: 20
0.78 0.08 0.13
Matches are distributed among these distances:
42 1 0.01
43 39 0.32
44 1 0.01
45 1 0.01
46 1 0.01
47 3 0.03
48 39 0.32
49 35 0.29
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (43 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
Found at i:145675 original size:92 final size:94
Alignment explanation
Indices: 145489--145728 Score: 290
Period size: 95 Copynumber: 2.5 Consensus size: 94
145479 AAAGCTGAGA
* *
145489 AAAAGGATGTCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGCCAA
1 AAAAGG-TGCCAATGTGCTGATTCAAGG-CAGCTACATTGGACTTAAAGATGG-AAAGGTGCCAA
*
145554 GTTGCTGATTCAAGGCCAGCTATATTGGACTT
63 GTTGCTGATTCAAGGCCAGCGATATTGGACTT
*
145586 -AAAGGTGCCAATGTGCTGATTCAAGGTCAGCTACATTGGACTTAAATAT-G-AAGGTGCCAA-T
1 AAAAGGTGCCAATGTGCTGATTCAAGG-CAGCTACATTGGACTTAAAGATGGAAAGGTGCCAAGT
*
145647 ATGCTGATTTAAGGCCAGCGATATTGGACTT
65 -TGCTGATTCAAGGCCAGCGATATTGGACTT
* * *
145678 AAAGGCAAGGTGCCAATATGCTGATTCAAGGCTAGCTATATTGGGCTTAAA
1 -AA---AAGGTGCCAATGTGCTGATTCAAGGC-AGCTACATTGGACTTAAA
145729 AGGAGACGCC
Statistics
Matches: 127, Mismatches: 9, Indels: 14
0.85 0.06 0.09
Matches are distributed among these distances:
91 1 0.01
92 38 0.30
94 2 0.02
95 40 0.31
96 6 0.05
97 40 0.31
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.27
Consensus pattern (94 bp):
AAAAGGTGCCAATGTGCTGATTCAAGGCAGCTACATTGGACTTAAAGATGGAAAGGTGCCAAGTT
GCTGATTCAAGGCCAGCGATATTGGACTT
Found at i:145831 original size:30 final size:30
Alignment explanation
Indices: 145772--145876 Score: 178
Period size: 30 Copynumber: 3.6 Consensus size: 30
145762 AGGTTTGCAT
* *
145772 CACTGACTTGTGGGCTTTT--AAAGGTTGC
1 CACTAACTTGTGGGCTTTTGAAAAGGGTGC
145800 CACTAACTTGTGGGCTTTTGAAAAGGGTGC
1 CACTAACTTGTGGGCTTTTGAAAAGGGTGC
145830 CACTAACTTGTGGGCTTTTGAAAAGGGTGC
1 CACTAACTTGTGGGCTTTTGAAAAGGGTGC
145860 CACTAACTTGTGGGCTT
1 CACTAACTTGTGGGCTT
145877 AAAAAGAAAA
Statistics
Matches: 73, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
28 18 0.25
30 55 0.75
ACGTcount: A:0.21, C:0.18, G:0.29, T:0.32
Consensus pattern (30 bp):
CACTAACTTGTGGGCTTTTGAAAAGGGTGC
Found at i:145894 original size:34 final size:30
Alignment explanation
Indices: 145797--145991 Score: 124
Period size: 30 Copynumber: 6.2 Consensus size: 30
145787 TTTTAAAGGT
** *
145797 TGCCACTAACTTGTGGGCTTTTGAAAAGGG
1 TGCCACTAACTTGTGGGCTTAAGAAAAGAG
** *
145827 TGCCACTAACTTGTGGGCTTTTGAAAAGGG
1 TGCCACTAACTTGTGGGCTTAAGAAAAGAG
145857 TGCCACTAACTTGTGGGCTTAAAAAGAAAAAGAG
1 TGCCACTAACTTGTGGGCTT---AAG-AAAAGAG
* *
145891 TGCCA-TAGAGTTGTGAGCTTACAAAAGAAAAAGAG
1 TGCCACTA-ACTTGTGGGCTT----AAG-AAAAGAG
** * * **
145926 TGCCACGGAGTTGTGGACTTTGGAAAAGA-
1 TGCCACTAACTTGTGGGCTTAAGAAAAGAG
** **
145955 TGCCACCGACTTGTGGGCTTCGGAAAAGAG
1 TGCCACTAACTTGTGGGCTTAAGAAAAGAG
145985 TGCCACT
1 TGCCACT
145992 GATTTATGGG
Statistics
Matches: 140, Mismatches: 17, Indels: 16
0.81 0.10 0.09
Matches are distributed among these distances:
29 25 0.18
30 62 0.44
31 1 0.01
33 3 0.02
34 21 0.15
35 28 0.20
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.24
Consensus pattern (30 bp):
TGCCACTAACTTGTGGGCTTAAGAAAAGAG
Found at i:145924 original size:35 final size:34
Alignment explanation
Indices: 145850--145940 Score: 112
Period size: 35 Copynumber: 2.6 Consensus size: 34
145840 TGGGCTTTTG
* * *
145850 AAAAGGGTGCCACTA-ACTTGTGGGCTTAAAAAGA
1 AAAAGAGTGCCA-TAGAGTTGTGAGCTTAAAAAGA
145884 AAAAGAGTGCCATAGAGTTGTGAGCTTACAAAAGA
1 AAAAGAGTGCCATAGAGTTGTGAGCTTA-AAAAGA
**
145919 AAAAGAGTGCCACGGAGTTGTG
1 AAAAGAGTGCCATAGAGTTGTG
145941 GACTTTGGAA
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
33 2 0.04
34 22 0.44
35 26 0.52
ACGTcount: A:0.38, C:0.13, G:0.29, T:0.20
Consensus pattern (34 bp):
AAAAGAGTGCCATAGAGTTGTGAGCTTAAAAAGA
Found at i:145968 original size:29 final size:30
Alignment explanation
Indices: 145919--145990 Score: 101
Period size: 29 Copynumber: 2.4 Consensus size: 30
145909 TTACAAAAGA
* * *
145919 AAAAGAGTGCCACGGAGTTGTGGACTTTGG
1 AAAAGAGTGCCACCGACTTGTGGACTTCGG
*
145949 AAAAGA-TGCCACCGACTTGTGGGCTTCGG
1 AAAAGAGTGCCACCGACTTGTGGACTTCGG
145978 AAAAGAGTGCCAC
1 AAAAGAGTGCCAC
145991 TGATTTATGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
29 25 0.68
30 12 0.32
ACGTcount: A:0.29, C:0.19, G:0.32, T:0.19
Consensus pattern (30 bp):
AAAAGAGTGCCACCGACTTGTGGACTTCGG
Found at i:146299 original size:13 final size:13
Alignment explanation
Indices: 146281--146305 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
146271 CATAAAGTGT
146281 TGTATCGATACAA
1 TGTATCGATACAA
146294 TGTATCGATACA
1 TGTATCGATACA
146306 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:146303 original size:33 final size:33
Alignment explanation
Indices: 146261--146327 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
146251 TTCAACGATT
146261 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
*** *
146294 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
146327 T
1 T
146328 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAGTGTTGTATCGATACAA
Found at i:146386 original size:13 final size:13
Alignment explanation
Indices: 146368--146392 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
146358 ATCACTTAAA
146368 TGTATCGATACAT
1 TGTATCGATACAT
146381 TGTATCGATACA
1 TGTATCGATACA
146393 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:146445 original size:52 final size:51
Alignment explanation
Indices: 146381--146529 Score: 244
Period size: 52 Copynumber: 2.9 Consensus size: 51
146371 ATCGATACAT
**
146381 TGTATCGATACACTGATCTTTGTATCGATACATGCAGGCAAATTTGCCCAGA
1 TGTATCGATACACT-ATCAATGTATCGATACATGCAGGCAAATTTGCCCAGA
*
146433 TGTATCGATACACTATAAAATGTATCGATACATGCAGGCAAATTTGCCCAGA
1 TGTATCGATACACTAT-CAATGTATCGATACATGCAGGCAAATTTGCCCAGA
146485 TGTATCGATACACTATTCAATGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACACTA-TCAATGTATCGATACATGCAGGCAAATTT
146530 TCATATTTCG
Statistics
Matches: 91, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
51 2 0.02
52 88 0.97
53 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.30
Consensus pattern (51 bp):
TGTATCGATACACTATCAATGTATCGATACATGCAGGCAAATTTGCCCAGA
Found at i:150157 original size:10 final size:10
Alignment explanation
Indices: 150142--150168 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
150132 TGCTAACTAA
150142 GTTTTTGTTT
1 GTTTTTGTTT
150152 GTTTTTGTTT
1 GTTTTTGTTT
150162 GTTTTTG
1 GTTTTTG
150169 CTTGATACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.00, C:0.00, G:0.22, T:0.78
Consensus pattern (10 bp):
GTTTTTGTTT
Found at i:159868 original size:1 final size:1
Alignment explanation
Indices: 159862--159961 Score: 74
Period size: 1 Copynumber: 100.0 Consensus size: 1
159852 CCTCCAAACC
** ** ** * **
159862 AAAAAAAAAAAAAAAAAAAACGAAAAAATGAAAAACCAAAAAAAAAAAAAAAACAAAAGGAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * *
159927 AAAACAAAAAACAATAAAAAAAACAAACAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
159962 GGGGGTCCGG
Statistics
Matches: 77, Mismatches: 22, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
1 77 1.00
ACGTcount: A:0.86, C:0.08, G:0.04, T:0.02
Consensus pattern (1 bp):
A
Found at i:159895 original size:23 final size:22
Alignment explanation
Indices: 159861--159961 Score: 98
Period size: 24 Copynumber: 4.4 Consensus size: 22
159851 TCCTCCAAAC
159861 CAAAAAAA-AAAAAAAAAAAAA
1 CAAAAAAACAAAAAAAAAAAAA
**
159882 CGAAAAAATGAAAAACCAAAAAAAA
1 C-AAAAAAACAAAAA--AAAAAAAA
*
159907 AAAAAAAACAAAAGGAAAAAAAAA
1 CAAAAAAACAAAA--AAAAAAAAA
159931 C-AAAAAACAATAAAAAAAACAAA
1 CAAAAAAACAA-AAAAAAAA-AAA
159954 CAAAAAAA
1 CAAAAAAA
159962 GGGGGTCCGG
Statistics
Matches: 66, Mismatches: 5, Indels: 15
0.77 0.06 0.17
Matches are distributed among these distances:
21 1 0.02
22 12 0.18
23 18 0.27
24 26 0.39
25 8 0.12
26 1 0.02
ACGTcount: A:0.85, C:0.09, G:0.04, T:0.02
Consensus pattern (22 bp):
CAAAAAAACAAAAAAAAAAAAA
Found at i:159908 original size:33 final size:32
Alignment explanation
Indices: 159862--159961 Score: 107
Period size: 33 Copynumber: 3.1 Consensus size: 32
159852 CCTCCAAACC
*
159862 AAAA-AAAAAAAAAAAAAAAACGAAAA-AATGAA
1 AAAACAAAAAAAAAAAAAAAAC-AAAAGAA-AAA
*
159894 AAACCAAAAAAAAAAAAAAAACAAAAGGAAAAA
1 AAAACAAAAAAAAAAAAAAAACAAAA-GAAAAA
*
159927 AAAACAAAAAACAATAAAAAAAAC-AAACAAAAA
1 AAAACAAAAAA-AA-AAAAAAAACAAAAGAAAAA
159960 AA
1 AA
159962 GGGGGTCCGG
Statistics
Matches: 59, Mismatches: 4, Indels: 9
0.82 0.06 0.12
Matches are distributed among these distances:
32 7 0.12
33 36 0.61
34 7 0.12
35 9 0.15
ACGTcount: A:0.86, C:0.08, G:0.04, T:0.02
Consensus pattern (32 bp):
AAAACAAAAAAAAAAAAAAAACAAAAGAAAAA
Found at i:161465 original size:30 final size:29
Alignment explanation
Indices: 161398--161903 Score: 364
Period size: 30 Copynumber: 17.1 Consensus size: 29
161388 TTCATCACCC
* *
161398 TTCAAAAGTCCACAAGTCAGTGGCATTTT
1 TTCAAAAGCCCACAAGTCAGTGGCATCTT
** *
161427 TTTTAAAGCCCACAAGTCAGTGGCATTTTT
1 TTCAAAAGCCCACAAGTCAGTGGCA-TCTT
* * *
161457 TTCAAAAGCCCACAAGTCCGTGGCAAC-C
1 TTCAAAAGCCCACAAGTCAGTGGCATCTT
* *
161485 TTC-AAAGCCCACAAATCAGTGGCACCCTT
1 TTCAAAAGCCCACAAGTCAGTGGCA-TCTT
** *
161514 TTCCGAAGCCCACAAGTCGGTGGCATCTT
1 TTCAAAAGCCCACAAGTCAGTGGCATCTT
* * * *
161543 TTCCAAAGTCCACAACTCCGTGGCACTCTTT
1 TTCAAAAGCCCACAAGTCAGTGGCA-TC-TT
** * * *
161574 TTCTTTTGTAAGCTCACAACTCTA-TAGCACTCTTT
1 TTC----AAAAGCCCACAAGTC-AGTGGCA-TC-TT
*** * *
161609 TTCTTTTTCAGCCCACAAGTTAGTGGCACCCTT
1 TTC---AAAAGCCCACAAGTCAGTGGCA-TCTT
*
161642 TTCAAAAGCCCACAAGTCAGTGGCATATTT
1 TTCAAAAGCCCACAAGTCAGTGGCAT-CTT
* *
161672 TTCAAAAGCCCACAAGTCAGTGGCAACCT
1 TTCAAAAGCCCACAAGTCAGTGGCATCTT
* *
161701 TT-AAAAGCCCACAAGTCAGTGGCAAC-C
1 TTCAAAAGCCCACAAGTCAGTGGCATCTT
* * *
161728 TTC-AAAGCCCACAAATCGGTGGCACCCTT
1 TTCAAAAGCCCACAAGTCAGTGGCA-TCTT
*
161757 TTCAAAAGCCCACAAGTCAGTGGCATATTT
1 TTCAAAAGCCCACAAGTCAGTGGCAT-CTT
* *
161787 TTCAAAAGCCCACAAGTCAGTGGCAACCT
1 TTCAAAAGCCCACAAGTCAGTGGCATCTT
* *
161816 TT-AAAAGCCCACAAGTCAGTGGCAAC-C
1 TTCAAAAGCCCACAAGTCAGTGGCATCTT
* *
161843 TTC-AAAGCCCACAAATCAGTGGCACCCTT
1 TTCAAAAGCCCACAAGTCAGTGGCA-TCTT
** * *
161872 TTCCGAAGCCCACAAGTCGGTGGCACCTT
1 TTCAAAAGCCCACAAGTCAGTGGCATCTT
161901 TTC
1 TTC
161904 CATCTTTAAG
Statistics
Matches: 393, Mismatches: 62, Indels: 44
0.79 0.12 0.09
Matches are distributed among these distances:
27 62 0.16
28 54 0.14
29 68 0.17
30 155 0.39
31 5 0.01
33 6 0.02
34 19 0.05
35 24 0.06
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.25
Consensus pattern (29 bp):
TTCAAAAGCCCACAAGTCAGTGGCATCTT
Found at i:161506 original size:27 final size:27
Alignment explanation
Indices: 161461--161513 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
161451 ATTTTTTTCA
* *
161461 AAAGCCCACAAGTCCGTGGCAACCTTC
1 AAAGCCCACAAATCAGTGGCAACCTTC
*
161488 AAAGCCCACAAATCAGTGGCACCCTT
1 AAAGCCCACAAATCAGTGGCAACCTT
161514 TTCCGAAGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.32, C:0.36, G:0.17, T:0.15
Consensus pattern (27 bp):
AAAGCCCACAAATCAGTGGCAACCTTC
Found at i:161643 original size:34 final size:36
Alignment explanation
Indices: 161552--161643 Score: 102
Period size: 35 Copynumber: 2.7 Consensus size: 36
161542 TTTCCAAAGT
*
161552 CCACAACTC-CGTGGCACTCTTTTTCTTTTGTAAGC
1 CCACAACTCTAGTGGCACTCTTTTTCTTTTGTAAGC
* * *
161587 TCACAACTCTA-TAGCACTCTTTTTCTTTT-TCAGC
1 CCACAACTCTAGTGGCACTCTTTTTCTTTTGTAAGC
* *
161621 CCACAAGT-TAGTGGCACCCTTTT
1 CCACAACTCTAGTGGCACTCTTTT
161644 CAAAAGCCCA
Statistics
Matches: 47, Mismatches: 8, Indels: 5
0.78 0.13 0.08
Matches are distributed among these distances:
33 2 0.04
34 20 0.43
35 25 0.53
ACGTcount: A:0.20, C:0.30, G:0.12, T:0.38
Consensus pattern (36 bp):
CCACAACTCTAGTGGCACTCTTTTTCTTTTGTAAGC
Found at i:161764 original size:85 final size:87
Alignment explanation
Indices: 161618--161901 Score: 348
Period size: 85 Copynumber: 3.3 Consensus size: 87
161608 TTTCTTTTTC
* * *
161618 AGCCCACAAGTTAGTGGCACCCTTTTCAAAAGCCCACAAGTCAGTGGCATA-TTTTTCAAAAGCC
1 AGCCCACAAGTCAGTGGCAACC-TTTC-AAAGCCCACAAGTCAGTGGCA-ACCTTTTCAAAAGCC
161682 CACAAGTCAGTGGCAACCTTT-AAA
63 CACAAGTCAGTGGCAACCTTTCAAA
* * *
161706 AGCCCACAAGTCAGTGGCAACC-TTCAAAGCCCACAAATCGGTGGCACCCTTTTCAAAAGCCCAC
1 AGCCCACAAGTCAGTGGCAACCTTTCAAAGCCCACAAGTCAGTGGCAACCTTTTCAAAAGCCCAC
**
161770 AAGTCAGTGGCATATTTTTCAAA
66 AAGTCAGTGGCA-ACCTTTCAAA
*
161793 AGCCCACAAGTCAGTGGCAACCTTTAAAAGCCCACAAGTCAGTGGCAACC--TTC-AAAGCCCAC
1 AGCCCACAAGTCAGTGGCAACCTTTCAAAGCCCACAAGTCAGTGGCAACCTTTTCAAAAGCCCAC
* * **
161855 AAATCAGTGGCACCCTTTTCCGA
66 AAGTCAGTGGCAACC-TTTCAAA
*
161878 AGCCCACAAGTCGGTGGC-ACCTTT
1 AGCCCACAAGTCAGTGGCAACCTTT
161902 TCCATCTTTA
Statistics
Matches: 172, Mismatches: 19, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
84 6 0.03
85 88 0.51
86 10 0.06
87 25 0.15
88 43 0.25
ACGTcount: A:0.31, C:0.30, G:0.18, T:0.20
Consensus pattern (87 bp):
AGCCCACAAGTCAGTGGCAACCTTTCAAAGCCCACAAGTCAGTGGCAACCTTTTCAAAAGCCCAC
AAGTCAGTGGCAACCTTTCAAA
Found at i:161820 original size:115 final size:115
Alignment explanation
Indices: 161398--161896 Score: 538
Period size: 115 Copynumber: 4.2 Consensus size: 115
161388 TTCATCACCC
* ** ****
161398 TTCAAAAGTCCACAAGTCAGTGGCATTTTTTTTAAAGCCCACAAGTCAGTGGCATTTTTTTCAAA
1 TTCAAAAGCCCACAAGTCAGTGGCATTTTTTCAAAAGCCCACAAGTCAGTGGCACACCTTT-AAA
*
161463 AGCCCACAAGTCCGTGGCAACCTTCAAAGCCCACAAATCAGTGGCACCCTT
65 AGCCCACAAGTCAGTGGCAACCTTCAAAGCCCACAAATCAGTGGCACCCTT
** * * * * * * *
161514 TTCCGAAGCCCACAAGTCGGTGGCATCTTTTCCAAAGTCCACAACTCCGTGGCACTCTTTTTCTT
1 TTCAAAAGCCCACAAGTCAGTGGCATTTTTTCAAAAGCCCACAAGTCAGTGGCACAC-----C-T
** * * * ** * *
161579 TTGTAAGCTCACAACTCTA-TAGC-ACTCTTTTTCTTTTTCAGCCCACAAGTTAGTGGCACCCTT
60 TTAAAAGCCCACAAGTC-AGTGGCAAC-C---TTC----AAAGCCCACAAATCAGTGGCACCCTT
161642 TTCAAAAGCCCACAAGTCAGTGGCATATTTTTCAAAAGCCCACAAGTCAGTGGCA-ACCTTTAAA
1 TTCAAAAGCCCACAAGTCAGTGGCAT-TTTTTCAAAAGCCCACAAGTCAGTGGCACACCTTTAAA
*
161706 AGCCCACAAGTCAGTGGCAACCTTCAAAGCCCACAAATCGGTGGCACCCTT
65 AGCCCACAAGTCAGTGGCAACCTTCAAAGCCCACAAATCAGTGGCACCCTT
161757 TTCAAAAGCCCACAAGTCAGTGGCATATTTTTCAAAAGCCCACAAGTCAGTGGCA-ACCTTTAAA
1 TTCAAAAGCCCACAAGTCAGTGGCAT-TTTTTCAAAAGCCCACAAGTCAGTGGCACACCTTTAAA
161821 AGCCCACAAGTCAGTGGCAACCTTCAAAGCCCACAAATCAGTGGCACCCTT
65 AGCCCACAAGTCAGTGGCAACCTTCAAAGCCCACAAATCAGTGGCACCCTT
** *
161872 TTCCGAAGCCCACAAGTCGGTGGCA
1 TTCAAAAGCCCACAAGTCAGTGGCA
161897 CCTTTTCCAT
Statistics
Matches: 319, Mismatches: 46, Indels: 37
0.79 0.11 0.09
Matches are distributed among these distances:
115 157 0.49
116 45 0.14
119 3 0.01
120 2 0.01
121 16 0.05
122 21 0.07
123 3 0.01
124 3 0.01
128 46 0.14
129 23 0.07
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (115 bp):
TTCAAAAGCCCACAAGTCAGTGGCATTTTTTCAAAAGCCCACAAGTCAGTGGCACACCTTTAAAA
GCCCACAAGTCAGTGGCAACCTTCAAAGCCCACAAATCAGTGGCACCCTT
Found at i:161968 original size:43 final size:43
Alignment explanation
Indices: 161907--161996 Score: 135
Period size: 43 Copynumber: 2.1 Consensus size: 43
161897 CCTTTTCCAT
* *
161907 CTTTAAGTCCAATGTAGCTGACCTTGAATCAGCACATTGGCAC
1 CTTTAAGTCCAATATAGCTGACCTTGAACCAGCACATTGGCAC
** *
161950 CTTTAAGTCCAATATAGCTGGTCTTGAACCAGCATATTGGCAC
1 CTTTAAGTCCAATATAGCTGACCTTGAACCAGCACATTGGCAC
161993 CTTT
1 CTTT
161997 TCCATCTTTA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (43 bp):
CTTTAAGTCCAATATAGCTGACCTTGAACCAGCACATTGGCAC
Found at i:162079 original size:55 final size:52
Alignment explanation
Indices: 161950--162087 Score: 150
Period size: 52 Copynumber: 2.6 Consensus size: 52
161940 ACATTGGCAC
* * * * *
161950 CTTTAAGTCCAATATAGCTGGTCTTGAACCAGCATATTGGCACCTTTTCCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACACCTTTTCCAG
* *
162002 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAG
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACA-CC-TTTTC-CAG
* * * *
162057 CTTTAAGCCCAATATCGTTGGCCGTGAATCA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCA
162088 ACATATTGGC
Statistics
Matches: 70, Mismatches: 13, Indels: 3
0.81 0.15 0.03
Matches are distributed among these distances:
52 36 0.51
53 2 0.03
54 5 0.07
55 27 0.39
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.34
Consensus pattern (52 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACACCTTTTCCAG
Found at i:162740 original size:9 final size:10
Alignment explanation
Indices: 162715--162760 Score: 85
Period size: 10 Copynumber: 4.7 Consensus size: 10
162705 CTTGATGATA
162715 TTTTGATCAC
1 TTTTGATCAC
162725 TTTTGATCAC
1 TTTTGATCAC
162735 -TTTGATCAC
1 TTTTGATCAC
162744 TTTTGATCAC
1 TTTTGATCAC
162754 TTTTGAT
1 TTTTGAT
162761 GTCCGGGTCA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
9 9 0.26
10 26 0.74
ACGTcount: A:0.20, C:0.17, G:0.11, T:0.52
Consensus pattern (10 bp):
TTTTGATCAC
Found at i:162740 original size:19 final size:19
Alignment explanation
Indices: 162716--162756 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
162706 TTGATGATAT
162716 TTTGATCACTTTTGATCAC
1 TTTGATCACTTTTGATCAC
162735 TTTGATCACTTTTGATCAC
1 TTTGATCACTTTTGATCAC
162754 TTT
1 TTT
162757 TGATGTCCGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.20, C:0.20, G:0.10, T:0.51
Consensus pattern (19 bp):
TTTGATCACTTTTGATCAC
Found at i:165794 original size:30 final size:29
Alignment explanation
Indices: 165716--165812 Score: 128
Period size: 28 Copynumber: 3.4 Consensus size: 29
165706 GTTACGACAA
* *
165716 TGGGC-TTTG-AAGGTTGCCATTGACTTG
1 TGGGCTTTTGAAAAGTTGCCACTGACTTG
*
165743 TGGGCTTTT-AAAGGTTGCCACTGACTTG
1 TGGGCTTTTGAAAAGTTGCCACTGACTTG
165771 TGGGCTTTTGAAAAGTATGCCACTGACTTG
1 TGGGCTTTTGAAAAGT-TGCCACTGACTTG
*
165801 TGGACTTTTGAA
1 TGGGCTTTTGAA
165813 GGGTGATGAA
Statistics
Matches: 63, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
27 5 0.08
28 29 0.46
29 5 0.08
30 24 0.38
ACGTcount: A:0.20, C:0.15, G:0.29, T:0.36
Consensus pattern (29 bp):
TGGGCTTTTGAAAAGTTGCCACTGACTTG
Found at i:167256 original size:1 final size:1
Alignment explanation
Indices: 167250--167361 Score: 107
Period size: 1 Copynumber: 112.0 Consensus size: 1
167240 ATCCGGACCC
* * * * * * * *
167250 TTTTTTTTTTGTTTTTGTTTGTTTTTTTTGTTTGTTTTTTTTTGTTTTTTTTTTGTTTTTTTGTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * * *
167315 TTTTTTTTGTTTTGTTTTTGTTTTTTTTTTGTTTTTTTTGTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
167362 GGAGGACGCC
Statistics
Matches: 85, Mismatches: 26, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 85 1.00
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (1 bp):
T
Found at i:167274 original size:19 final size:19
Alignment explanation
Indices: 167252--167359 Score: 118
Period size: 19 Copynumber: 5.7 Consensus size: 19
167242 CCGGACCCTT
167252 TTTTTTTTGTTTTTGTTTG
1 TTTTTTTTGTTTTTGTTTG
167271 TTTTTTTTGTTTGTT-TTT-
1 TTTTTTTTGTTT-TTGTTTG
*
167289 TTTTGTTTTTTTTTTGTTT-
1 TTTT-TTTTGTTTTTGTTTG
*
167308 TTTTGTTTTTTTTTTGTTTTG
1 TTTT-TTTTGTTTTTG-TTTG
*
167329 TTTTTGTT-TTTTT-TTTG
1 TTTTTTTTGTTTTTGTTTG
167346 TTTTTTTTGTTTTT
1 TTTTTTTTGTTTTT
167360 TTGGAGGACG
Statistics
Matches: 80, Mismatches: 3, Indels: 13
0.83 0.03 0.14
Matches are distributed among these distances:
17 11 0.14
18 11 0.14
19 46 0.57
20 8 0.10
21 4 0.05
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (19 bp):
TTTTTTTTGTTTTTGTTTG
Found at i:167288 original size:33 final size:32
Alignment explanation
Indices: 167250--167359 Score: 150
Period size: 33 Copynumber: 3.3 Consensus size: 32
167240 ATCCGGACCC
167250 TTTTTTTTTTGTTTTTGTTTGTTTTTTTTGTTT
1 TTTTTTTTTTGTTTTTGTTT-TTTTTTTTGTTT
* *
167283 GTTTTTTTTTGTTTTTTTTTTGTTTTTTTGTTTT
1 TTTTTTTTTTGTTTTTGTTTT-TTTTTTTG-TTT
167317 TTTTTTGTTTTGTTTTTG-TTTTTTTTTTGTTT
1 TTTTTT-TTTTGTTTTTGTTTTTTTTTTTGTTT
167349 TTTTTGTTTTT
1 TTTTT-TTTTT
167360 TTGGAGGACG
Statistics
Matches: 69, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
32 13 0.19
33 35 0.51
34 11 0.16
35 10 0.14
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (32 bp):
TTTTTTTTTTGTTTTTGTTTTTTTTTTTGTTT
Found at i:167317 original size:41 final size:43
Alignment explanation
Indices: 167250--167362 Score: 187
Period size: 41 Copynumber: 2.7 Consensus size: 43
167240 ATCCGGACCC
167250 TTTTTTTTTTGTTTTTGTTTGTTTTTTTTGTTTGTTTT-TTTTTG
1 TTTTTTTTTTGTTTTT-TTTG-TTTTTTTGTTTGTTTTGTTTTTG
167294 TTTTTTTTTTG-TTTTTTTGTTTTTTT-TTTGTTTTGTTTTTG
1 TTTTTTTTTTGTTTTTTTTGTTTTTTTGTTTGTTTTGTTTTTG
167335 TTTTTTTTTTGTTTTTTTTGTTTTTTTG
1 TTTTTTTTTTGTTTTTTTTGTTTTTTTG
167363 GAGGACGCCG
Statistics
Matches: 66, Mismatches: 0, Indels: 7
0.90 0.00 0.10
Matches are distributed among these distances:
40 8 0.12
41 24 0.36
42 19 0.29
43 4 0.06
44 11 0.17
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (43 bp):
TTTTTTTTTTGTTTTTTTTGTTTTTTTGTTTGTTTTGTTTTTG
Found at i:182561 original size:52 final size:52
Alignment explanation
Indices: 182483--182611 Score: 204
Period size: 52 Copynumber: 2.5 Consensus size: 52
182473 CGAAATATGA
* *
182483 AAATTTGCCTGCATGTATTGATACATTGAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTGAATAATGTATCGATACATCTGGGC
* ** *
182535 AAATTTGTCTGCATGTATCGATACATTTTATAATGTATCGATACATTTGGGC
1 AAATTTGCCTGCATGTATCGATACATTGAATAATGTATCGATACATCTGGGC
182587 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
182612 AAGATCAGTG
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 70 1.00
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.36
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTGAATAATGTATCGATACATCTGGGC
Found at i:182624 original size:52 final size:51
Alignment explanation
Indices: 182483--182631 Score: 199
Period size: 52 Copynumber: 2.9 Consensus size: 51
182473 CGAAATATGA
*
182483 AAATTTGCCTGCATGTATTGATACATTGAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTG-ATAGTGTATCGATACATCTGGGC
* * * *
182535 AAATTTGTCTGCATGTATCGATACATTTTATAATGTATCGATACATTTGGGC
1 AAATTTGCCTGCATGTATCGATACA-TTGATAGTGTATCGATACATCTGGGC
** *
182587 AAATTTGCCTGCATGTATCGATACAAAGATCAGTGTATCAATACA
1 AAATTTGCCTGCATGTATCGATACATTGAT-AGTGTATCGATACA
182632 ATGTATCGAT
Statistics
Matches: 84, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
51 2 0.02
52 80 0.95
53 2 0.02
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.35
Consensus pattern (51 bp):
AAATTTGCCTGCATGTATCGATACATTGATAGTGTATCGATACATCTGGGC
Found at i:182726 original size:13 final size:13
Alignment explanation
Indices: 182708--182732 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
182698 CAAAAAAATA
182708 TGTATCGATACAT
1 TGTATCGATACAT
182721 TGTATCGATACA
1 TGTATCGATACA
182733 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:182731 original size:33 final size:33
Alignment explanation
Indices: 182686--182752 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
182676 AGTAGCTTGA
*
182686 ATTGTATTGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
182719 ATTGTATCGATACAACACTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
182752 A
1 A
182753 AATCATTGAA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:183731 original size:43 final size:43
Alignment explanation
Indices: 183670--183855 Score: 203
Period size: 48 Copynumber: 4.1 Consensus size: 43
183660 TAAAGATGGA
183670 AAAGGTGCCAAGT-TGCTGATTCAAGGCCAGCTATATTGGACTT
1 AAAGGTGCCAA-TATGCTGATTCAAGGCCAGCTATATTGGACTT
* * *
183713 AAAGGTGCCAATGTGCTGATTCAAGGTCAGCTACATTGGACTTAAAT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGAC-T---T
* *
183760 ATGAAGGTGCCAATATGCTGATTTAAGGCCAGCGATATTGGACTT
1 A--AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
*
183805 AAAGGCAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGGCTT
1 --A---AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
183853 AAA
1 AAA
183856 AGGAGACGCC
Statistics
Matches: 121, Mismatches: 12, Indels: 20
0.79 0.08 0.13
Matches are distributed among these distances:
42 1 0.01
43 39 0.32
44 1 0.01
45 1 0.01
46 1 0.01
47 3 0.02
48 40 0.33
49 35 0.29
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (43 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
Found at i:183744 original size:95 final size:93
Alignment explanation
Indices: 183616--183847 Score: 297
Period size: 95 Copynumber: 2.4 Consensus size: 93
183606 AAAGCTGAGA
*
183616 AAAAGGATGTCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGCCAA
1 AAAAGG-TGCCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGAT-G--AAGGTGCCAA
*
183681 GT-TGCTGATTCAAGGCCAGCTATATTGGACTT
62 -TATGCTGATTCAAGGCCAGCGATATTGGACTT
* * *
183713 -AAAGGTGCCAATGTGCTGATTCAAGGTCAGCTACATTGGACTTAAATATGAAGGTGCCAATATG
1 AAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGAAGGTGCCAATATG
*
183777 CTGATTTAAGGCCAGCGATATTGGACTT
66 CTGATTCAAGGCCAGCGATATTGGACTT
* *
183805 AAAGGCAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTG
1 -AA---AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTG
183848 GGCTTAAAAG
Statistics
Matches: 120, Mismatches: 9, Indels: 12
0.85 0.06 0.09
Matches are distributed among these distances:
91 1 0.01
92 38 0.32
94 2 0.02
95 40 0.33
96 5 0.04
97 34 0.28
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (93 bp):
AAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGAAGGTGCCAATATG
CTGATTCAAGGCCAGCGATATTGGACTT
Found at i:183802 original size:92 final size:95
Alignment explanation
Indices: 183616--183855 Score: 308
Period size: 97 Copynumber: 2.5 Consensus size: 95
183606 AAAGCTGAGA
* *
183616 AAAAGGATGTCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGCCAA
1 AAAAGG-TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGG-AAAGGTGCCAA
*
183681 GTTGCTGATTCAAGGCCAGCTATATTGGACTT
64 GTTGCTGATTCAAGGCCAGCGATATTGGACTT
* *
183713 -AAAGGTGCCAATGTGCTGATTCAAGGTCAGCTACATTGGACTTAAATAT-G-AAGGTGCCAA-T
1 AAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAGGTGCCAAGT
*
183774 ATGCTGATTTAAGGCCAGCGATATTGGACTT
66 -TGCTGATTCAAGGCCAGCGATATTGGACTT
* * *
183805 AAAGGCAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGGCTTAAA
1 -AA---AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAA
183856 AGGAGACGCC
Statistics
Matches: 127, Mismatches: 10, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
91 1 0.01
92 38 0.30
94 2 0.02
95 40 0.31
96 5 0.04
97 41 0.32
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (95 bp):
AAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAGGTGCCAAGT
TGCTGATTCAAGGCCAGCGATATTGGACTT
Found at i:183958 original size:30 final size:30
Alignment explanation
Indices: 183899--184221 Score: 232
Period size: 30 Copynumber: 10.7 Consensus size: 30
183889 AGGTTTGCAT
*
183899 CACTGACTTGTGGGCTTTT--AAAGGTTGC
1 CACTGACTTGTGGGCTTTTGAAAAGGGTGC
*
183927 CACTGACTTGTGGGCTTTTGTAAAGGGTGC
1 CACTGACTTGTGGGCTTTTGAAAAGGGTGC
* *
183957 CACTAACTTGTGGGCCTTTGAAAAGGGTGC
1 CACTGACTTGTGGGCTTTTGAAAAGGGTGC
* ** *
183987 CACTAACTTGTGGGCTTAAAAAGAAAAAGAGTGC
1 CACTGACTTGTGGGCTT---TTG-AAAAGGGTGC
* * ** *
184021 CA-TAGAGTTGTGAGCTTACAAAAGAAAAAGAGTGC
1 CACT-GACTTGTGGGCTT----TTG-AAAAGGGTGC
* * * * *
184056 CACGGAGTTGTGGACTTTGGAAAA-GATGC
1 CACTGACTTGTGGGCTTTTGAAAAGGGTGC
* * **
184085 CACCGATTTGTGGGCTTCGGAAAAGGGTGC
1 CACTGACTTGTGGGCTTTTGAAAAGGGTGC
* *
184115 CACTGATTTGTGGGC-TTTG--AAGGTTGC
1 CACTGACTTGTGGGCTTTTGAAAAGGGTGC
*
184142 CACTGACTTGTGGGCTTTT--AAAGGTTGC
1 CACTGACTTGTGGGCTTTTGAAAAGGGTGC
**
184170 CACTGACTTGTGGGCTTTTGAAAAGTATGC
1 CACTGACTTGTGGGCTTTTGAAAAGGGTGC
* *
184200 CACTAACTTGTGGACTTTTGAA
1 CACTGACTTGTGGGCTTTTGAA
184222 GGGTGATGAA
Statistics
Matches: 248, Mismatches: 33, Indels: 26
0.81 0.11 0.08
Matches are distributed among these distances:
27 21 0.08
28 49 0.20
29 25 0.10
30 100 0.40
31 1 0.00
33 2 0.01
34 21 0.08
35 29 0.12
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (30 bp):
CACTGACTTGTGGGCTTTTGAAAAGGGTGC
Done.